sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-4P-AA8J-01 10 33495214 33495214 C T NRP1 Intron 0.20 TCGA-4P-AA8J-01 10 6257188 6257188 C T PFKFB3 Silent p.F69F 0.15 TCGA-4P-AA8J-01 10 75849918 75849918 A T VCL Silent p.I438I 0.15 TCGA-4P-AA8J-01 10 88260246 88260246 T C WAPAL Missense_Mutation p.I252V 0.11 tolerated_low_confidence(0.77) benign(0) TCGA-4P-AA8J-01 11 1080567 1080567 T C MUC2 Silent p.D403D 0.16 TCGA-4P-AA8J-01 11 126134870 126134871 - A SRPR Frame_Shift_Ins p.M503Ifs*9 0.13 TCGA-4P-AA8J-01 11 14316369 14316369 C G RRAS2 Missense_Mutation p.R79T 0.17 deleterious(0) probably_damaging(0.999) TCGA-4P-AA8J-01 11 21250968 21250968 C T NELL1 Missense_Mutation p.P506L 0.15 tolerated(0.15) possibly_damaging(0.67) TCGA-4P-AA8J-01 11 55322321 55322321 G T OR4C15 Missense_Mutation p.C180F 0.17 deleterious_low_confidence(0.01) benign(0.063) TCGA-4P-AA8J-01 11 65481075 65481077 GGA - KAT5 In_Frame_Del p.E185del 0.20 TCGA-4P-AA8J-01 11 75115170 75115170 G C RPS3 Missense_Mutation p.V169L 0.20 tolerated(0.3) benign(0.005) TCGA-4P-AA8J-01 11 7982292 7982292 G A NLRP10 Silent p.L289L 0.20 TCGA-4P-AA8J-01 11 9608371 9608371 T - WEE1 Frame_Shift_Del p.N585Kfs*53 0.12 TCGA-4P-AA8J-01 12 100613798 100613799 - T ACTR6 Frame_Shift_Ins p.K315* 0.20 TCGA-4P-AA8J-01 12 105583914 105583914 C G APPL2 Missense_Mutation p.E427Q 0.31 tolerated(0.39) benign(0.025) TCGA-4P-AA8J-01 12 113754397 113754397 G A SLC8B1 Silent p.L309L 0.19 TCGA-4P-AA8J-01 12 121790158 121790158 A - ANAPC5 5'UTR 0.27 TCGA-4P-AA8J-01 12 124401152 124401152 G A DNAH10 Missense_Mutation p.R3506Q 0.18 possibly_damaging(0.464) TCGA-4P-AA8J-01 12 132683769 132683769 C T GALNT9 Missense_Mutation p.E117K 0.10 tolerated(0.73) benign(0.023) TCGA-4P-AA8J-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.10 TCGA-4P-AA8J-01 12 21626537 21626537 T A RECQL Silent p.V465V 0.19 TCGA-4P-AA8J-01 12 53609155 53609155 T C RARG Missense_Mutation p.I133V 0.16 tolerated(0.7) benign(0.006) TCGA-4P-AA8J-01 12 57000035 57000035 G A BAZ2A Missense_Mutation p.S754F 0.22 tolerated(0.09) benign(0.001) TCGA-4P-AA8J-01 12 6966024 6966024 C G USP5 Silent p.V246V 0.16 TCGA-4P-AA8J-01 13 22033206 22033206 C T ZDHHC20 Silent p.V35V 0.15 TCGA-4P-AA8J-01 13 42875133 42875133 A G AKAP11 Missense_Mutation p.I751V 0.18 tolerated(1) benign(0.003) TCGA-4P-AA8J-01 14 105612131 105612131 G A JAG2 Silent p.S963S 0.50 TCGA-4P-AA8J-01 14 21215972 21215972 G A EDDM3A Missense_Mutation p.R78H 0.15 tolerated(1) benign(0.002) TCGA-4P-AA8J-01 14 73422295 73422295 A G DCAF4 Missense_Mutation p.N357S 0.32 tolerated(0.81) benign(0.003) TCGA-4P-AA8J-01 15 101024772 101024772 C A CERS3 Missense_Mutation p.K130N 0.21 deleterious(0) possibly_damaging(0.478) TCGA-4P-AA8J-01 15 42564296 42564296 T C TMEM87A Missense_Mutation p.K57R 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-4P-AA8J-01 15 49135689 49135689 T C SHC4 Missense_Mutation p.N467S 0.17 deleterious(0) probably_damaging(0.979) TCGA-4P-AA8J-01 15 56032808 56032808 C A PRTG Missense_Mutation p.V57F 0.09 tolerated(0.06) benign(0.059) TCGA-4P-AA8J-01 15 58919941 58919941 T C ADAM10 Missense_Mutation p.I440V 0.17 deleterious(0.01) probably_damaging(0.951) TCGA-4P-AA8J-01 15 59350639 59350639 C G RNF111 Missense_Mutation p.S419C 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-4P-AA8J-01 15 72320109 72320109 C G MYO9A Missense_Mutation p.E321Q 0.14 deleterious(0.01) benign(0.13) TCGA-4P-AA8J-01 15 81598758 81598758 C G IL16 Intron 0.17 TCGA-4P-AA8J-01 15 89421324 89421324 G A HAPLN3 Silent p.S320S 0.20 TCGA-4P-AA8J-01 15 90320173 90320173 A G MESP2 Silent p.G195G 0.54 TCGA-4P-AA8J-01 15 91517833 91517833 C T PRC1 Silent p.E444E 0.17 TCGA-4P-AA8J-01 16 1129463 1129463 G A SSTR5 Missense_Mutation p.A199T 0.18 tolerated(0.67) probably_damaging(0.999) TCGA-4P-AA8J-01 16 18848708 18848708 T A SMG1 Missense_Mutation p.S2491C 0.13 tolerated(0.14) benign(0.359) TCGA-4P-AA8J-01 16 67316154 67316154 A G PLEKHG4 Silent p.L385L 0.12 TCGA-4P-AA8J-01 16 67778309 67778309 G A RANBP10 Silent p.F150F 0.13 TCGA-4P-AA8J-01 16 79245622 79245622 G C WWOX Missense_Mutation p.E392Q 0.12 tolerated(0.54) benign(0.006) TCGA-4P-AA8J-01 17 21826266 21826266 G C FAM27L RNA 0.18 TCGA-4P-AA8J-01 17 27614359 27614359 T C NUFIP2 Missense_Mutation p.Y218C 0.11 deleterious(0) probably_damaging(0.998) TCGA-4P-AA8J-01 17 33903191 33903191 C A PEX12 Missense_Mutation p.E230D 0.16 tolerated(0.47) benign(0.004) TCGA-4P-AA8J-01 17 37026438 37026438 G A LASP1 5'UTR 0.12 TCGA-4P-AA8J-01 17 39190709 39197253 17:39190709-39197253 - KRTAP1-3 large deletion 0.24 TCGA-4P-AA8J-01 17 41958118 41958118 C T MPP2 Missense_Mutation p.R364H 0.19 deleterious(0) probably_damaging(1) TCGA-4P-AA8J-01 17 4936430 4936430 G C SLC52A1 Nonsense_Mutation p.S390* 0.13 TCGA-4P-AA8J-01 17 74006034 74006034 C G EVPL Missense_Mutation p.K1084N 0.20 deleterious(0) possibly_damaging(0.884) TCGA-4P-AA8J-01 17 74006522 74006522 C A EVPL Nonsense_Mutation p.E922* 0.10 TCGA-4P-AA8J-01 17 7574000 7574000 C A TP53 Nonsense_Mutation p.E343* 0.18 TCGA-4P-AA8J-01 17 7576904 7576904 G A TP53 Silent p.S314S 0.13 TCGA-4P-AA8J-01 18 12691416 12691416 C T CEP76 Missense_Mutation p.R292K 0.16 tolerated(0.29) benign(0.012) TCGA-4P-AA8J-01 18 21054989 21054989 A G RIOK3 Missense_Mutation p.H364R 0.13 tolerated(0.37) benign(0) TCGA-4P-AA8J-01 18 9550142 9550142 T C PPP4R1 Missense_Mutation p.T819A 0.26 tolerated(1) benign(0.04) TCGA-4P-AA8J-01 19 10368995 10368995 G T MRPL4 Missense_Mutation p.K181N 0.17 deleterious(0) probably_damaging(1) TCGA-4P-AA8J-01 19 10368996 10368996 C T MRPL4 Silent p.L182L 0.15 TCGA-4P-AA8J-01 19 12995779 12995779 G T KLF1 Missense_Mutation p.R337S 0.12 deleterious(0) probably_damaging(0.995) TCGA-4P-AA8J-01 19 20116857 20116857 T C ZNF682 Missense_Mutation p.K485R 0.18 deleterious(0.03) benign(0.264) TCGA-4P-AA8J-01 19 23405636 23405636 T A ZNF724P Missense_Mutation p.I471F 0.24 deleterious(0) probably_damaging(0.979) TCGA-4P-AA8J-01 19 38590602 38590602 C T SIPA1L3 Missense_Mutation p.L556F 0.27 deleterious(0) probably_damaging(0.98) TCGA-4P-AA8J-01 19 39734290 39734290 G T IFNL3 Missense_Mutation p.S191R 0.15 tolerated(0.34) benign(0.075) TCGA-4P-AA8J-01 19 40947969 40947969 T A SERTAD3 Missense_Mutation p.R7W 0.14 deleterious(0) probably_damaging(0.981) TCGA-4P-AA8J-01 19 53473609 53473609 T A ZNF702P RNA 0.14 TCGA-4P-AA8J-01 19 54140088 54140088 C G DPRX Missense_Mutation p.A141G 0.12 tolerated(0.42) benign(0.054) TCGA-4P-AA8J-01 19 56549545 56549545 G A NLRP5 Missense_Mutation p.A924T 0.27 tolerated(1) benign(0.012) TCGA-4P-AA8J-01 1 114515930 114515930 A G HIPK1 Silent p.A1143A 0.13 TCGA-4P-AA8J-01 1 11580751 11580751 C T PTCHD2 Silent p.F736F 0.13 TCGA-4P-AA8J-01 1 154557382 154557382 G A ADAR Missense_Mutation p.T1194M 0.18 tolerated(0.1) benign(0.042) TCGA-4P-AA8J-01 1 158549000 158549000 G T OR10X1 Silent p.I230I 0.23 TCGA-4P-AA8J-01 1 160388969 160388969 C A VANGL2 Missense_Mutation p.L124M 0.22 deleterious(0.01) possibly_damaging(0.776) TCGA-4P-AA8J-01 1 160721236 160721236 A C SLAMF7 Missense_Mutation p.N291H 0.11 tolerated(0.18) benign(0.01) TCGA-4P-AA8J-01 1 175086244 175086244 C A TNN Silent p.V763V 0.20 TCGA-4P-AA8J-01 1 175375841 175375841 C G TNR Missense_Mutation p.D4H 0.16 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-4P-AA8J-01 1 185962417 185962417 C T HMCN1 Nonsense_Mutation p.Q1161* 0.15 TCGA-4P-AA8J-01 1 19183871 19183871 G A TAS1R2 Missense_Mutation p.S146F 0.07 deleterious(0.04) benign(0.023) TCGA-4P-AA8J-01 1 228645204 228645204 C G HIST3H2A Missense_Mutation p.Q105H 0.22 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-4P-AA8J-01 1 231403629 231403629 G T GNPAT Missense_Mutation p.G420V 0.11 deleterious(0) probably_damaging(1) TCGA-4P-AA8J-01 1 23381605 23381605 T C KDM1A Silent p.R278R 0.13 TCGA-4P-AA8J-01 1 248402918 248402918 T A OR2M4 Missense_Mutation p.S230T 0.11 deleterious(0.03) benign(0.364) TCGA-4P-AA8J-01 1 25549805 25549805 T C SYF2 Silent p.K228K 0.09 TCGA-4P-AA8J-01 1 28354301 28354301 T A EYA3 Missense_Mutation p.Q166H 0.09 tolerated(0.43) possibly_damaging(0.576) TCGA-4P-AA8J-01 1 86590619 86590619 G A COL24A1 Missense_Mutation p.T467I 0.13 tolerated(0.51) benign(0.004) TCGA-4P-AA8J-01 20 13976286 13976286 C A MACROD2 5'UTR 0.23 TCGA-4P-AA8J-01 20 34097827 34097827 G A CEP250 Missense_Mutation p.D2337N 0.13 benign(0.012) TCGA-4P-AA8J-01 20 35282014 35282014 G A NDRG3 Missense_Mutation p.S346F 0.18 deleterious(0) possibly_damaging(0.867) TCGA-4P-AA8J-01 20 43615932 43615933 - T STK4 Frame_Shift_Ins p.T175Yfs*45 0.16 TCGA-4P-AA8J-01 20 9560902 9560902 C A PAK7 Nonsense_Mutation p.E294* 0.07 TCGA-4P-AA8J-01 21 43169349 43169350 - TAATC RIPK4 Frame_Shift_Ins p.I213Rfs*24 0.09 TCGA-4P-AA8J-01 21 48078668 48078668 G C PRMT2 Missense_Mutation p.M222I 0.14 deleterious(0) possibly_damaging(0.811) TCGA-4P-AA8J-01 22 46238887 46238887 G C ATXN10 Silent p.V418V 0.14 TCGA-4P-AA8J-01 2 142567884 142567884 C G LRP1B Missense_Mutation p.D57H 0.15 probably_damaging(0.961) TCGA-4P-AA8J-01 2 152293497 152293497 A G RIF1 Missense_Mutation p.N451S 0.07 deleterious(0.05) benign(0.174) TCGA-4P-AA8J-01 2 160206325 160206325 G T BAZ2B Missense_Mutation p.P1586H 0.15 probably_damaging(0.971) TCGA-4P-AA8J-01 2 182780744 182780744 C G SSFA2 Missense_Mutation p.Q793E 0.15 deleterious(0.02) benign(0.197) TCGA-4P-AA8J-01 2 197657852 197657852 T C GTF3C3 Missense_Mutation p.K80R 0.12 tolerated_low_confidence(0.59) possibly_damaging(0.783) TCGA-4P-AA8J-01 2 203155110 203155110 C T NOP58 Silent p.G188G 0.12 TCGA-4P-AA8J-01 2 215610519 215610519 T C BARD1 Silent p.S579S 0.11 TCGA-4P-AA8J-01 2 220102604 220102604 T C GLB1L Missense_Mutation p.I473V 0.20 tolerated(0.4) benign(0.003) TCGA-4P-AA8J-01 2 27162927 27162927 C T DPYSL5 Missense_Mutation p.H326Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-4P-AA8J-01 2 27360256 27360256 G A C2orf53 Silent p.P314P 0.21 TCGA-4P-AA8J-01 2 27684212 27684212 C T IFT172 Missense_Mutation p.R789Q 0.17 tolerated(0.63) benign(0.005) TCGA-4P-AA8J-01 2 85788103 85788103 C T GGCX Missense_Mutation p.V17I 0.15 tolerated_low_confidence(0.19) benign(0.007) TCGA-4P-AA8J-01 2 90229073 90229073 G A IGKV1D-42 Missense_Mutation p.M3I 0.18 deleterious(0.02) benign(0.171) TCGA-4P-AA8J-01 3 129195646 129195646 T A IFT122 Splice_Site p.X434_splice 0.16 TCGA-4P-AA8J-01 3 132407666 132407666 C T NPHP3 Missense_Mutation p.A985T 0.14 deleterious(0) probably_damaging(1) TCGA-4P-AA8J-01 3 140401654 140401654 G A TRIM42 Missense_Mutation p.R231H 0.09 tolerated(0.67) benign(0.051) TCGA-4P-AA8J-01 3 152553754 152553754 A G P2RY1 Silent p.V61V 0.16 TCGA-4P-AA8J-01 3 154002694 154002694 A T DHX36 Missense_Mutation p.M705K 0.14 deleterious(0) probably_damaging(0.984) TCGA-4P-AA8J-01 3 164730803 164730803 T A SI Missense_Mutation p.I1343L 0.18 deleterious(0) possibly_damaging(0.547) TCGA-4P-AA8J-01 3 165548079 165548079 G C BCHE Missense_Mutation p.A248G 0.17 deleterious(0.03) probably_damaging(0.916) TCGA-4P-AA8J-01 3 170201117 170201117 G A SLC7A14 Silent p.D367D 0.22 TCGA-4P-AA8J-01 3 35835336 35835336 C A ARPP21 Missense_Mutation p.N776K 0.14 deleterious(0) benign(0.301) TCGA-4P-AA8J-01 3 99514668 99514668 C T COL8A1 Silent p.N641N 0.16 TCGA-4P-AA8J-01 4 114824718 114824718 G A ARSJ Missense_Mutation p.T171M 0.16 deleterious(0) probably_damaging(1) TCGA-4P-AA8J-01 4 159554629 159554629 G C RXFP1 Splice_Site p.X324_splice 0.12 TCGA-4P-AA8J-01 4 176556071 176556071 G C GPM6A Silent p.L274L 0.15 TCGA-4P-AA8J-01 4 187549909 187549910 - A FAT1 Frame_Shift_Ins p.K1445Qfs*7 0.23 TCGA-4P-AA8J-01 4 83858433 83858433 C T LIN54 Silent p.S517S 0.19 TCGA-4P-AA8J-01 5 110409267 110409267 C T TSLP Missense_Mutation p.S92L 0.14 deleterious(0.03) benign(0.016) TCGA-4P-AA8J-01 5 131953847 131953847 G T RAD50 Nonsense_Mutation p.E1084* 0.15 TCGA-4P-AA8J-01 5 140084063 140084063 G C ZMAT2 Missense_Mutation p.Q121H 0.12 deleterious(0) possibly_damaging(0.764) TCGA-4P-AA8J-01 5 140236881 140236881 G A PCDHA10 Silent p.R416R 0.36 TCGA-4P-AA8J-01 5 140261916 140261916 C T PCDHA13 Silent p.L21L 0.19 TCGA-4P-AA8J-01 5 148730897 148730897 T C GRPEL2 3'UTR 0.16 TCGA-4P-AA8J-01 5 161324132 161324132 G A GABRA1 Missense_Mutation p.D359N 0.11 tolerated(0.32) benign(0.381) TCGA-4P-AA8J-01 5 16465736 16465736 G A ZNF622 Silent p.F13F 0.11 TCGA-4P-AA8J-01 5 167622268 167622268 A T TENM2 Missense_Mutation p.K956N 0.12 tolerated(0.38) benign(0.005) TCGA-4P-AA8J-01 5 32395338 32395338 T C ZFR Missense_Mutation p.M636V 0.14 deleterious(0.02) unknown(0) TCGA-4P-AA8J-01 5 6377334 6377334 T C MED10 Missense_Mutation p.I51V 0.12 tolerated(0.27) benign(0.028) TCGA-4P-AA8J-01 5 63803606 63803606 G T RGS7BP Silent p.S78S 0.14 TCGA-4P-AA8J-01 6 134305519 134305519 A T TBPL1 Silent p.I96I 0.22 TCGA-4P-AA8J-01 6 135507017 135507017 G - MYB Intron 0.10 TCGA-4P-AA8J-01 6 144811226 144811226 C T UTRN Missense_Mutation p.S1385L 0.13 tolerated(0.2) benign(0.14) TCGA-4P-AA8J-01 6 160176488 160176488 G A WTAP Missense_Mutation p.E346K 0.13 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-4P-AA8J-01 6 42975003 42975003 G A PPP2R5D Missense_Mutation p.E198K 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-4P-AA8J-01 6 43307320 43307320 G A ZNF318 Silent p.I1472I 0.18 TCGA-4P-AA8J-01 6 51484174 51484174 G A PKHD1 Missense_Mutation p.S3977F 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.77) TCGA-4P-AA8J-01 7 119914579 119914579 G A KCND2 5'UTR 0.23 TCGA-4P-AA8J-01 7 148809257 148809257 C T ZNF425 Missense_Mutation p.M92I 0.12 tolerated(0.07) benign(0) TCGA-4P-AA8J-01 7 48315902 48315902 C G ABCA13 Missense_Mutation p.I2213M 0.17 possibly_damaging(0.453) TCGA-4P-AA8J-01 7 6089554 6089554 T A EIF2AK1 Nonsense_Mutation p.R134* 0.21 TCGA-4P-AA8J-01 8 101270765 101270765 T C RNF19A 3'UTR 0.16 TCGA-4P-AA8J-01 8 121301912 121301912 G T COL14A1 Missense_Mutation p.K1381N 0.10 deleterious(0) possibly_damaging(0.58) TCGA-4P-AA8J-01 8 141461393 141461393 G A TRAPPC9 Missense_Mutation p.S125F 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-4P-AA8J-01 8 143614818 143614818 C T BAI1 Silent p.L1187L 0.09 TCGA-4P-AA8J-01 8 143867012 143867012 C A LY6D Silent p.T48T 0.13 TCGA-4P-AA8J-01 8 145623977 145623977 C G CPSF1 Missense_Mutation p.E564Q 0.15 tolerated(0.27) benign(0.01) TCGA-4P-AA8J-01 8 27917999 27917999 C T NUGGC Silent p.R347R 0.23 TCGA-4P-AA8J-01 8 42044968 42044968 C T PLAT Missense_Mutation p.G163R 0.09 deleterious(0) probably_damaging(0.969) TCGA-4P-AA8J-01 8 77776353 77776353 C G ZFHX4 Nonsense_Mutation p.S3468* 0.12 TCGA-4P-AA8J-01 9 111753007 111753007 T C CTNNAL1 Missense_Mutation p.N213S 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-4P-AA8J-01 9 130241706 130241706 A C LRSAM1 Missense_Mutation p.E275D 0.18 tolerated(0.51) benign(0.002) TCGA-4P-AA8J-01 9 132400134 132400134 G C ASB6 Missense_Mutation p.L401V 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-4P-AA8J-01 9 135554241 135554241 A T GTF3C4 Missense_Mutation p.N412I 0.21 tolerated(0.09) probably_damaging(0.994) TCGA-4P-AA8J-01 9 37740854 37740854 A G FRMPD1 Missense_Mutation p.K777E 0.15 deleterious(0.01) possibly_damaging(0.864) TCGA-4P-AA8J-01 9 40774189 40774189 G T ZNF658 Silent p.L362L 0.16 TCGA-4P-AA8J-01 9 74313061 74313061 G C TMEM2 Missense_Mutation p.S1146C 0.14 tolerated(0.05) possibly_damaging(0.682) TCGA-4P-AA8J-01 9 74489702 74489703 - A ABHD17B Frame_Shift_Ins p.G99Wfs*5 0.20 TCGA-4P-AA8J-01 9 74764432 74764432 C A GDA 5'UTR 0.30 TCGA-4P-AA8J-01 9 86421439 86421439 G C GKAP1 5'UTR 0.11 TCGA-4P-AA8J-01 X 142113849 142113849 T A SPANXN4 Missense_Mutation p.C17S 0.25 tolerated_low_confidence(0.1) benign(0.415) TCGA-4P-AA8J-01 X 155003770 155003770 G A SPRY3 Silent p.L79L 0.24 TCGA-BA-4074-01 10 121336662 121336662 G A TIAL1 Missense_Mutation p.T281M 0.52 tolerated(0.25) possibly_damaging(0.623) TCGA-BA-4074-01 10 134188714 134188714 G A LRRC27 Missense_Mutation p.G521R 0.43 tolerated_low_confidence(0.39) benign(0) TCGA-BA-4074-01 10 32326241 32326241 G C KIF5B Missense_Mutation p.Q218E 0.07 tolerated(1) benign(0) TCGA-BA-4074-01 10 89711893 89711893 C T PTEN Nonsense_Mutation p.Q171* 0.39 TCGA-BA-4074-01 11 1155707 1155707 C T MUC5AC Missense_Mutation p.T132M 0.31 tolerated(0.08) benign(0.157) TCGA-BA-4074-01 11 1215357 1215357 A G MUC5AC RNA 0.23 TCGA-BA-4074-01 11 1220120 1220120 G A MUC5AC RNA 0.33 TCGA-BA-4074-01 11 126162997 126162997 A T TIRAP Silent p.V231V 0.39 TCGA-BA-4074-01 11 31816281 31816281 G A PAX6 Silent p.N207N 0.24 TCGA-BA-4074-01 11 404005 404005 C T PKP3 Missense_Mutation p.P714S 0.25 tolerated(0.83) possibly_damaging(0.492) TCGA-BA-4074-01 11 51515476 51515476 C T OR4C46 Silent p.S65S 0.22 TCGA-BA-4074-01 11 5344959 5344959 A C OR51B2 Missense_Mutation p.I190R 0.34 deleterious(0.02) probably_damaging(0.973) TCGA-BA-4074-01 11 57243919 57243919 C G RTN4RL2 Missense_Mutation p.D266E 0.25 deleterious(0.01) benign(0.204) TCGA-BA-4074-01 11 5969347 5969347 C T OR56A3 Silent p.T257T 0.22 TCGA-BA-4074-01 11 66985219 66985219 C T KDM2A Silent p.P235P 0.11 TCGA-BA-4074-01 11 70028647 70028647 C T ANO1 Silent p.L815L 0.06 TCGA-BA-4074-01 11 72468875 72468875 G A STARD10 Missense_Mutation p.L172F 0.42 tolerated(0.06) benign(0.222) TCGA-BA-4074-01 11 7817968 7817969 - A OR5P2 Frame_Shift_Ins p.C175Lfs*2 0.26 TCGA-BA-4074-01 11 94759470 94759470 T C KDM4E Missense_Mutation p.V250A 0.46 deleterious(0) probably_damaging(0.996) TCGA-BA-4074-01 12 102151077 102151077 A G GNPTAB Missense_Mutation p.M1116T 0.13 tolerated(0.15) possibly_damaging(0.722) TCGA-BA-4074-01 12 102295157 102295157 T C DRAM1 Silent p.S96S 0.22 TCGA-BA-4074-01 12 110968353 110968353 A G RAD9B Silent p.A383A 0.23 TCGA-BA-4074-01 12 132237706 132237706 C T SFSWAP Missense_Mutation p.P374S 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-BA-4074-01 12 301770 301770 G A SLC6A12 Silent p.Y525Y 0.27 TCGA-BA-4074-01 12 49420409 49420409 G A KMT2D Missense_Mutation p.H5114Y 0.28 unknown(0) TCGA-BA-4074-01 12 50037938 50037938 G A PRPF40B Missense_Mutation p.R881Q 0.23 deleterious_low_confidence(0) possibly_damaging(0.785) TCGA-BA-4074-01 12 6500142 6500142 G A LTBR 3'UTR 0.26 TCGA-BA-4074-01 12 6690898 6690898 G A CHD4 Missense_Mutation p.P1533L 0.29 tolerated(0.28) possibly_damaging(0.908) TCGA-BA-4074-01 12 8376719 8376719 G C FAM90A1 Missense_Mutation p.N72K 0.32 tolerated(0.11) benign(0.001) TCGA-BA-4074-01 13 20656229 20656229 A G ZMYM2 Missense_Mutation p.N1176S 0.52 tolerated(0.08) benign(0.002) TCGA-BA-4074-01 13 30801627 30801627 C T KATNAL1 Missense_Mutation p.A357T 0.29 deleterious(0) probably_damaging(1) TCGA-BA-4074-01 13 70535475 70535475 T A KLHL1 Missense_Mutation p.N261I 0.45 deleterious(0.03) benign(0.195) TCGA-BA-4074-01 14 21831284 21831284 G A SUPT16H Nonsense_Mutation p.R474* 0.25 TCGA-BA-4074-01 14 23884668 23884668 G A MYH7 Silent p.S1735S 0.27 TCGA-BA-4074-01 14 53098999 53098999 A C GPR137C Missense_Mutation p.N280T 0.29 deleterious(0) probably_damaging(0.969) TCGA-BA-4074-01 14 68008608 68008608 G A PLEKHH1 Silent p.A8A 0.21 TCGA-BA-4074-01 14 68249583 68249583 G A ZFYVE26 Missense_Mutation p.A1429V 0.26 tolerated(0.11) benign(0.363) TCGA-BA-4074-01 14 73957815 73957815 C T HEATR4 Intron 0.36 TCGA-BA-4074-01 14 74179621 74179621 T C PNMA1 Missense_Mutation p.E241G 0.26 deleterious(0.03) benign(0.248) TCGA-BA-4074-01 14 91338426 91338426 C T RPS6KA5 Missense_Mutation p.V801I 0.29 unknown(0) TCGA-BA-4074-01 15 24922597 24922597 C T NPAP1 Missense_Mutation p.S528F 0.24 tolerated(0.56) benign(0.041) TCGA-BA-4074-01 15 38794593 38794594 - T RASGRP1 Frame_Shift_Ins p.D487Gfs*10 0.43 TCGA-BA-4074-01 16 1812698 1812698 G A MAPK8IP3 Missense_Mutation p.V564I 0.32 tolerated(0.34) benign(0.007) TCGA-BA-4074-01 16 23536527 23536527 G A EARS2 Intron 0.28 TCGA-BA-4074-01 16 24971270 24971270 T G ARHGAP17 Missense_Mutation p.M202L 0.24 tolerated(0.13) benign(0.017) TCGA-BA-4074-01 16 3786099 3786099 G C CREBBP Missense_Mutation p.L1556V 0.32 unknown(0) TCGA-BA-4074-01 16 4747373 4747373 C T ANKS3 Missense_Mutation p.E619K 0.28 deleterious_low_confidence(0) benign(0.254) TCGA-BA-4074-01 16 4833975 4833975 G A SEPT12 Missense_Mutation p.R157W 0.26 deleterious(0) probably_damaging(0.999) TCGA-BA-4074-01 16 67228755 67228755 C T E2F4 Missense_Mutation p.P227L 0.33 tolerated(0.19) benign(0.001) TCGA-BA-4074-01 16 89293174 89293174 C T ZNF778 Missense_Mutation p.L132F 0.28 tolerated(0.12) possibly_damaging(0.852) TCGA-BA-4074-01 17 10356164 10356164 G A MYH4 Missense_Mutation p.A1066V 0.48 deleterious(0.01) benign(0.089) TCGA-BA-4074-01 17 41958711 41958711 G A MPP2 Missense_Mutation p.H274Y 0.65 tolerated(0.1) probably_damaging(0.927) TCGA-BA-4074-01 17 48540530 48540531 - C ACSF2 Frame_Shift_Ins p.K271Qfs*25 0.12 TCGA-BA-4074-01 17 5312067 5312067 G A NUP88 Silent p.I281I 0.55 TCGA-BA-4074-01 17 61903471 61903471 G A FTSJ3 Missense_Mutation p.P82L 0.54 deleterious(0) possibly_damaging(0.884) TCGA-BA-4074-01 17 7139299 7139299 G A PHF23 Missense_Mutation p.S316F 0.60 deleterious(0.03) probably_damaging(0.962) TCGA-BA-4074-01 17 7577507 7577507 T A TP53 Missense_Mutation p.E258D 0.47 deleterious(0) possibly_damaging(0.761) TCGA-BA-4074-01 17 7836476 7836476 C T CNTROB Missense_Mutation p.L27F 0.55 deleterious_low_confidence(0.04) probably_damaging(0.943) TCGA-BA-4074-01 17 81043036 81043036 A G METRNL Silent p.V131V 0.62 TCGA-BA-4074-01 17 9395196 9395196 C T STX8 Missense_Mutation p.R164H 0.47 deleterious(0) benign(0.051) TCGA-BA-4074-01 18 25585828 25585828 C G CDH2 Missense_Mutation p.E278Q 0.29 deleterious(0) probably_damaging(0.989) TCGA-BA-4074-01 18 64239355 64239355 C G CDH19 Missense_Mutation p.K29N 0.32 tolerated(0.11) benign(0.024) TCGA-BA-4074-01 18 70423379 70423379 G T NETO1 Missense_Mutation p.P291H 0.35 deleterious(0) probably_damaging(1) TCGA-BA-4074-01 18 74631933 74631933 C T ZNF236 Missense_Mutation p.A1157V 0.34 tolerated(0.57) benign(0.148) TCGA-BA-4074-01 19 14044707 14044707 C G PODNL1 Missense_Mutation p.D258H 0.14 deleterious(0.04) benign(0.346) TCGA-BA-4074-01 19 22363783 22363783 T C ZNF676 Missense_Mutation p.I246V 0.08 deleterious(0.04) benign(0.265) TCGA-BA-4074-01 19 3600302 3600302 C T TBXA2R Missense_Mutation p.V111I 0.33 tolerated(0.13) benign(0.005) TCGA-BA-4074-01 19 37643034 37643034 G A ZNF585A Silent p.R534R 0.26 TCGA-BA-4074-01 19 41594389 41594389 G A CYP2A13 Missense_Mutation p.G5R 0.25 deleterious(0) unknown(0) TCGA-BA-4074-01 19 47763905 47763905 A T CCDC9 Nonsense_Mutation p.K91* 0.23 TCGA-BA-4074-01 19 50785002 50785002 G A MYH14 Missense_Mutation p.R1481H 0.27 deleterious(0.02) benign(0.003) TCGA-BA-4074-01 19 51768727 51768727 G A SIGLECL1 Missense_Mutation p.G43E 0.35 deleterious(0) possibly_damaging(0.844) TCGA-BA-4074-01 19 53015012 53015012 T G ZNF578 Missense_Mutation p.C460G 0.23 deleterious(0) probably_damaging(0.989) TCGA-BA-4074-01 19 54327177 54327177 G A NLRP12 Silent p.D84D 0.29 TCGA-BA-4074-01 19 55020273 55020273 C A LAIR2 Missense_Mutation p.D131E 0.27 tolerated(0.49) benign(0.021) TCGA-BA-4074-01 19 56104586 56104586 C A FIZ1 Missense_Mutation p.A241S 0.42 tolerated(0.72) unknown(0) TCGA-BA-4074-01 19 56422072 56422072 G A NLRP13 Silent p.H713H 0.24 TCGA-BA-4074-01 19 6187796 6187796 C T ACSBG2 Nonsense_Mutation p.Q623* 0.26 TCGA-BA-4074-01 19 9524051 9524051 T C ZNF266 Missense_Mutation p.E517G 0.28 deleterious(0) possibly_damaging(0.812) TCGA-BA-4074-01 1 109795731 109795731 C T CELSR2 Silent p.H1010H 0.16 TCGA-BA-4074-01 1 118640342 118640342 A T SPAG17 Missense_Mutation p.M321K 0.31 tolerated(0.08) benign(0.302) TCGA-BA-4074-01 1 12423152 12423152 A T VPS13D Missense_Mutation p.I3433F 0.28 benign(0.076) TCGA-BA-4074-01 1 145290477 145290477 C G NOTCH2NL 3'Flank 0.03 TCGA-BA-4074-01 1 147086390 147086390 G A BCL9 Missense_Mutation p.V179M 0.19 deleterious(0) probably_damaging(0.994) TCGA-BA-4074-01 1 150483454 150483454 G A ECM1 Missense_Mutation p.R190Q 0.32 deleterious(0.01) possibly_damaging(0.902) TCGA-BA-4074-01 1 150935566 150935566 A G SETDB1 Missense_Mutation p.I1136M 0.24 deleterious(0) probably_damaging(0.999) TCGA-BA-4074-01 1 151140026 151140026 G A SCNM1 Intron 0.33 TCGA-BA-4074-01 1 155004226 155004226 C T DCST2 Nonsense_Mutation p.W188* 0.26 TCGA-BA-4074-01 1 158549182 158549182 A G OR10X1 Missense_Mutation p.F170L 0.29 tolerated(1) benign(0.014) TCGA-BA-4074-01 1 179815800 179815800 C T TOR1AIP2 Silent p.L273L 0.17 TCGA-BA-4074-01 1 180805685 180805685 A G XPR1 Missense_Mutation p.Y445C 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-BA-4074-01 1 197145781 197145781 G A ZBTB41 Missense_Mutation p.H598Y 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-BA-4074-01 1 218458634 218458634 C T RRP15 5'UTR 0.12 TCGA-BA-4074-01 1 240493929 240493929 G A FMN2 Missense_Mutation p.M1488I 0.21 benign(0.092) TCGA-BA-4074-01 1 243716166 243716166 C A AKT3 Missense_Mutation p.R343M 0.15 deleterious(0) probably_damaging(0.986) TCGA-BA-4074-01 1 43908207 43908207 A T SZT2 Missense_Mutation p.H2633L 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-BA-4074-01 1 51050366 51050367 - T FAF1 Frame_Shift_Ins p.S320Ifs*11 0.24 TCGA-BA-4074-01 1 54370406 54370406 G A DIO1 Silent p.Q135Q 0.32 TCGA-BA-4074-01 1 56990179 56990179 C - PPAP2B Frame_Shift_Del p.S116Rfs*36 0.17 TCGA-BA-4074-01 1 82436053 82436053 C A LPHN2 Missense_Mutation p.A913D 0.20 deleterious(0) benign(0.255) TCGA-BA-4074-01 1 9086388 9086388 G T SLC2A7 Missense_Mutation p.A6E 0.19 tolerated(1) benign(0) TCGA-BA-4074-01 1 94645394 94645394 C G ARHGAP29 Missense_Mutation p.W789C 0.20 tolerated(0.18) benign(0.006) TCGA-BA-4074-01 1 94697030 94697030 C T ARHGAP29 Silent p.K46K 0.35 TCGA-BA-4074-01 20 3171246 3171246 T C DDRGK1 3'UTR 0.35 TCGA-BA-4074-01 20 3526406 3526406 C T ATRN Intron 0.42 TCGA-BA-4074-01 20 62329691 62329691 C G TNFRSF6B Missense_Mutation p.I226M 0.19 tolerated(0.18) benign(0.208) TCGA-BA-4074-01 21 45837865 45837865 C T TRPM2 Missense_Mutation p.H1068Y 0.31 tolerated(0.76) probably_damaging(0.999) TCGA-BA-4074-01 21 47410318 47410318 C T COL6A1 Silent p.D328D 0.26 TCGA-BA-4074-01 22 41736067 41736067 C T ZC3H7B Missense_Mutation p.S355L 0.24 tolerated(0.11) benign(0.176) TCGA-BA-4074-01 2 101627939 101627939 C G TBC1D8 Missense_Mutation p.R949T 0.34 tolerated(0.25) possibly_damaging(0.616) TCGA-BA-4074-01 2 120388230 120388230 C A PCDP1 Silent p.R606R 0.29 TCGA-BA-4074-01 2 141083449 141083449 T A LRP1B Splice_Site p.X4075_splice 0.32 TCGA-BA-4074-01 2 141777529 141777529 C A LRP1B Missense_Mutation p.M644I 0.23 benign(0.072) TCGA-BA-4074-01 2 152235971 152235971 C T TNFAIP6 Missense_Mutation p.S253F 0.27 deleterious(0.04) benign(0.172) TCGA-BA-4074-01 2 182852607 182852607 C G PPP1R1C Silent p.L48L 0.31 TCGA-BA-4074-01 2 203760839 203760839 T A WDR12 Missense_Mutation p.R186S 0.30 deleterious(0) probably_damaging(0.986) TCGA-BA-4074-01 2 215976352 215976352 C T ABCA12 Missense_Mutation p.R44Q 0.24 deleterious(0) benign(0.44) TCGA-BA-4074-01 2 220150640 220150640 C T DNAJB2 3'UTR 0.24 TCGA-BA-4074-01 2 220354645 220354645 C T SPEG Silent p.L2969L 0.24 TCGA-BA-4074-01 2 234669681 234669682 - GGACAGTCAC UGT1A8 Intron 0.19 TCGA-BA-4074-01 2 234749404 234749404 C T HJURP Silent p.R674R 0.30 TCGA-BA-4074-01 2 24905933 24905933 C G NCOA1 Silent p.V156V 0.23 TCGA-BA-4074-01 2 27668659 27668659 T C IFT172 Missense_Mutation p.T1623A 0.29 deleterious(0.03) probably_damaging(0.919) TCGA-BA-4074-01 2 43980883 43980883 C T PLEKHH2 Missense_Mutation p.A1260V 0.39 tolerated(0.08) benign(0.417) TCGA-BA-4074-01 2 61118932 61118932 A T REL Missense_Mutation p.D42V 0.26 deleterious(0) possibly_damaging(0.899) TCGA-BA-4074-01 2 97779626 97779626 C G ANKRD36 Nonsense_Mutation p.Y50* 0.34 TCGA-BA-4074-01 3 122269638 122269638 A C PARP9 Missense_Mutation p.H408Q 0.27 tolerated(0.54) benign(0.001) TCGA-BA-4074-01 3 123695771 123695771 T C ROPN1 Silent p.R58R 0.29 TCGA-BA-4074-01 3 125176125 125176125 C T SNX4 Silent p.E343E 0.27 TCGA-BA-4074-01 3 130289727 130289727 G C COL6A6 Missense_Mutation p.D823H 0.26 tolerated(0.12) possibly_damaging(0.766) TCGA-BA-4074-01 3 149089577 149089577 G A TM4SF1 Missense_Mutation p.S164F 0.33 deleterious(0.01) probably_damaging(1) TCGA-BA-4074-01 3 179291189 179291189 G A ACTL6A Missense_Mutation p.D104N 0.30 tolerated(0.13) benign(0.12) TCGA-BA-4074-01 3 193220338 193220338 G C ATP13A4 Missense_Mutation p.L109V 0.32 tolerated(0.28) benign(0.009) TCGA-BA-4074-01 4 175160279 175160279 G A FBXO8 Missense_Mutation p.A213V 0.17 deleterious(0) probably_damaging(0.997) TCGA-BA-4074-01 4 177067239 177067239 T C WDR17 Silent p.H565H 0.19 TCGA-BA-4074-01 4 2896318 2896318 A C ADD1 Missense_Mutation p.N201H 0.34 deleterious(0) probably_damaging(0.952) TCGA-BA-4074-01 4 73012714 73012714 C A NPFFR2 Missense_Mutation p.P252T 0.25 deleterious(0) probably_damaging(0.989) TCGA-BA-4074-01 4 76924754 76924754 T A CXCL9 Silent p.T125T 0.25 TCGA-BA-4074-01 4 99358174 99358174 A G RAP1GDS1 Missense_Mutation p.I552V 0.39 tolerated(1) benign(0.076) TCGA-BA-4074-01 5 135587503 135587503 C T TRPC7 Nonsense_Mutation p.W471* 0.40 TCGA-BA-4074-01 5 171356 171356 A G PLEKHG4B Missense_Mutation p.M927V 0.71 deleterious(0) possibly_damaging(0.644) TCGA-BA-4074-01 5 171638666 171638666 G A UBTD2 3'UTR 0.44 TCGA-BA-4074-01 5 24498538 24498538 G T CDH10 Missense_Mutation p.T495N 0.10 deleterious(0.04) benign(0.259) TCGA-BA-4074-01 5 24498580 24498580 T A CDH10 Missense_Mutation p.D481V 0.12 deleterious(0) benign(0.406) TCGA-BA-4074-01 5 32058193 32058193 A G PDZD2 Silent p.E728E 0.08 TCGA-BA-4074-01 5 7867445 7867445 A T FASTKD3 Missense_Mutation p.F251Y 0.12 tolerated(0.06) benign(0.339) TCGA-BA-4074-01 6 101037629 101037629 C T ASCC3 Missense_Mutation p.E1811K 0.26 tolerated(0.55) benign(0.027) TCGA-BA-4074-01 6 111913273 111913273 G A TRAF3IP2 Missense_Mutation p.P6L 0.27 deleterious(0) probably_damaging(1) TCGA-BA-4074-01 6 12015862 12015862 A T HIVEP1 Translation_Start_Site p.M1? 0.24 deleterious(0.02) possibly_damaging(0.746) TCGA-BA-4074-01 6 3155096 3155096 G A TUBB2A Silent p.V113V 0.15 TCGA-BA-4074-01 6 33171561 33171562 - T SLC39A7 Frame_Shift_Ins p.M461Ifs*9 0.16 TCGA-BA-4074-01 6 47682289 47682290 - T GPR115 Frame_Shift_Ins p.Y437Lfs*28 0.27 TCGA-BA-4074-01 6 52129395 52129395 G T MCM3 Missense_Mutation p.F851L 0.24 tolerated(0.06) possibly_damaging(0.493) TCGA-BA-4074-01 6 53516534 53516534 G - KLHL31 Frame_Shift_Del p.E590Sfs*29 0.36 TCGA-BA-4074-01 6 69703805 69703805 C A BAI3 Missense_Mutation p.T627K 0.28 deleterious(0) probably_damaging(0.998) TCGA-BA-4074-01 6 87969654 87969654 G C ZNF292 Missense_Mutation p.E2103Q 0.23 deleterious(0.04) benign(0.443) TCGA-BA-4074-01 6 90385185 90385185 G A MDN1 Silent p.L4253L 0.29 TCGA-BA-4074-01 7 39247047 39247047 C A POU6F2 Silent p.G113G 0.27 TCGA-BA-4074-01 7 4900071 4900071 G A PAPOLB Silent p.L456L 0.42 TCGA-BA-4074-01 7 73115164 73115164 T A STX1A Missense_Mutation p.M229L 0.36 tolerated(0.13) benign(0.058) TCGA-BA-4074-01 8 113697694 113697694 C T CSMD3 Missense_Mutation p.R808Q 0.26 tolerated(0.07) benign(0.324) TCGA-BA-4074-01 8 22053789 22053789 C T BMP1 Intron 0.52 TCGA-BA-4074-01 8 68102908 68102908 G A CSPP1 Missense_Mutation p.A1077T 0.31 deleterious(0.03) benign(0.031) TCGA-BA-4074-01 8 73926133 73926133 T G TERF1 Missense_Mutation p.I108S 0.29 deleterious(0) probably_damaging(0.955) TCGA-BA-4074-01 8 77617964 77617964 T C ZFHX4 Silent p.S547S 0.19 TCGA-BA-4074-01 8 8750418 8750418 G A MFHAS1 Missense_Mutation p.P51S 0.33 tolerated_low_confidence(0.14) possibly_damaging(0.641) TCGA-BA-4074-01 8 92972691 92972691 C A RUNX1T1 Missense_Mutation p.A543S 0.24 deleterious(0) possibly_damaging(0.887) TCGA-BA-4074-01 9 107380278 107380278 C A OR13C9 Missense_Mutation p.D70Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-BA-4074-01 9 117848842 117848842 C T TNC Missense_Mutation p.G390R 0.24 deleterious(0) probably_damaging(1) TCGA-BA-4074-01 9 128112629 128112629 C T GAPVD1 Missense_Mutation p.P1146S 0.53 tolerated(0.05) benign(0.192) TCGA-BA-4074-01 9 129458752 129458752 G A LMX1B 3'UTR 0.27 TCGA-BA-4074-01 9 130652958 130652958 C T ST6GALNAC6 Missense_Mutation p.R221Q 0.56 benign(0.004) TCGA-BA-4074-01 9 139339534 139339534 T C SEC16A Silent p.L2299L 0.41 TCGA-BA-4074-01 9 139990685 139990687 ACA TAC MAN1B1 Splice_Site p.X156_splice 0.16 TCGA-BA-4074-01 9 140473185 140473185 G A DPH7 Silent p.T15T 0.78 TCGA-BA-4074-01 9 77397710 77397710 C T TRPM6 Silent p.V993V 0.49 TCGA-BA-4074-01 X 123699280 123699280 G T TENM1 Nonsense_Mutation p.C736* 0.07 TCGA-BA-4074-01 X 34149589 34149589 A C FAM47A Silent p.S269S 0.47 TCGA-BA-4074-01 X 38024064 38024064 T A SRPX Missense_Mutation p.E204V 0.12 deleterious(0) possibly_damaging(0.807) TCGA-BA-4074-01 X 72299343 72299343 C T PABPC1L2A 5'UTR 0.52 TCGA-BA-4075-01 10 127436201 127436201 T G EDRF1 Missense_Mutation p.Y971D 0.36 deleterious(0.01) probably_damaging(1) TCGA-BA-4075-01 10 134942077 134942077 G A GPR123 Missense_Mutation p.E249K 0.62 deleterious(0) probably_damaging(1) TCGA-BA-4075-01 10 135182483 135182483 T C ECHS1 Missense_Mutation p.Y153C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-4075-01 10 56138621 56138621 T C PCDH15 Missense_Mutation p.N80S 0.11 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-BA-4075-01 10 72468481 72468481 C T ADAMTS14 Missense_Mutation p.R273C 0.06 deleterious(0) probably_damaging(0.998) TCGA-BA-4075-01 10 74234940 74234940 C T MICU1 Missense_Mutation p.G284E 0.37 deleterious(0) probably_damaging(0.999) TCGA-BA-4075-01 10 92509030 92509030 G A HTR7 Silent p.I287I 0.07 TCGA-BA-4075-01 10 99186064 99186065 - A PGAM1 5'UTR p.M1? 0.26 TCGA-BA-4075-01 11 116653688 116653688 G A ZNF259 Missense_Mutation p.L347F 0.73 deleterious(0.01) benign(0.044) TCGA-BA-4075-01 11 20419170 20419170 C T PRMT3 Missense_Mutation p.S203L 0.42 benign(0.102) TCGA-BA-4075-01 11 24518746 24518746 A T LUZP2 5'UTR 0.11 TCGA-BA-4075-01 11 47594940 47594940 C - KBTBD4 Frame_Shift_Del p.A383Lfs*17 0.09 TCGA-BA-4075-01 11 47857319 47857319 G A NUP160 Missense_Mutation p.P329S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-BA-4075-01 11 55595192 55595192 C A OR5L2 Silent p.I166I 0.03 TCGA-BA-4075-01 11 61120500 61120500 C T CYB561A3 Missense_Mutation p.A186T 0.24 tolerated(0.07) benign(0.124) TCGA-BA-4075-01 11 62445536 62445536 C T UBXN1 Silent p.R115R 0.03 TCGA-BA-4075-01 11 62520234 62520234 C G ZBTB3 Silent p.L351L 0.03 TCGA-BA-4075-01 11 65271029 65271029 A G MALAT1 RNA 0.20 TCGA-BA-4075-01 11 69462871 69462871 C T CCND1 Silent p.R228R 0.02 TCGA-BA-4075-01 11 7847182 7847182 A T OR5P3 Missense_Mutation p.F113Y 0.05 tolerated(0.06) benign(0.216) TCGA-BA-4075-01 11 92088408 92088408 C A FAT3 Missense_Mutation p.P1044T 0.06 benign(0.005) TCGA-BA-4075-01 12 114358415 114358415 C A RBM19 Splice_Site p.X795_splice 0.05 TCGA-BA-4075-01 12 114404022 114404022 A C RBM19 Missense_Mutation p.L4R 0.05 deleterious(0) probably_damaging(0.999) TCGA-BA-4075-01 12 124297944 124297944 G A DNAH10 Missense_Mutation p.M1008I 0.05 benign(0.001) TCGA-BA-4075-01 12 22063175 22063175 C G ABCC9 Missense_Mutation p.Q412H 0.04 deleterious(0) benign(0.426) TCGA-BA-4075-01 12 32777925 32777925 A G FGD4 Missense_Mutation p.I520V 0.49 deleterious(0.05) benign(0.077) TCGA-BA-4075-01 12 39947881 39947881 C A ABCD2 Nonsense_Mutation p.E686* 0.05 TCGA-BA-4075-01 12 43824171 43824171 C T ADAMTS20 Missense_Mutation p.R1122H 0.11 deleterious(0.04) benign(0.157) TCGA-BA-4075-01 12 49425941 49425941 G A KMT2D Nonsense_Mutation p.Q4183* 0.04 TCGA-BA-4075-01 12 49425942 49425942 C A KMT2D Silent p.G4182G 0.04 TCGA-BA-4075-01 12 51404506 51404506 C T SLC11A2 Silent p.V31V 0.17 TCGA-BA-4075-01 12 56566447 56566447 T C SMARCC2 Silent p.K564K 0.28 TCGA-BA-4075-01 12 69233471 69233471 A G MDM2 Missense_Mutation p.I446V 0.07 deleterious(0) possibly_damaging(0.766) TCGA-BA-4075-01 12 95365236 95365236 G A NDUFA12 Missense_Mutation p.P140S 0.10 deleterious(0.02) possibly_damaging(0.702) TCGA-BA-4075-01 12 95645720 95645720 C T VEZT Missense_Mutation p.S14F 0.08 deleterious(0) probably_damaging(0.988) TCGA-BA-4075-01 13 109817248 109817248 G C MYO16 Splice_Site p.X1700_splice 0.30 TCGA-BA-4075-01 13 114535695 114535695 C T GAS6 Missense_Mutation p.A289T 0.05 tolerated(0.58) probably_damaging(0.976) TCGA-BA-4075-01 13 24470966 24470966 C T C1QTNF9B Missense_Mutation p.D54N 0.03 tolerated(0.1) benign(0.126) TCGA-BA-4075-01 13 28599056 28599056 C T FLT3 Silent p.Q744Q 0.54 TCGA-BA-4075-01 13 28854571 28854571 A C PAN3 Silent p.R738R 0.52 TCGA-BA-4075-01 13 49086282 49086282 C A RCBTB2 Missense_Mutation p.G182V 0.04 deleterious(0) probably_damaging(0.991) TCGA-BA-4075-01 13 73467981 73467981 A T PIBF1 Missense_Mutation p.K461I 0.28 deleterious(0) probably_damaging(0.997) TCGA-BA-4075-01 13 79911341 79911341 C A RBM26 Missense_Mutation p.G850W 0.06 deleterious(0) probably_damaging(1) TCGA-BA-4075-01 13 88327784 88327784 C A SLITRK5 Silent p.I47I 0.43 TCGA-BA-4075-01 13 99042216 99042216 G A FARP1 Silent p.A287A 0.10 TCGA-BA-4075-01 14 105686450 105686450 C T BRF1 Missense_Mutation p.G445S 0.06 deleterious(0.01) possibly_damaging(0.545) TCGA-BA-4075-01 14 24900024 24900024 C T CBLN3 5'Flank 0.35 TCGA-BA-4075-01 14 64066011 64066011 G A WDR89 Missense_Mutation p.S217L 0.16 deleterious(0) possibly_damaging(0.833) TCGA-BA-4075-01 14 70712774 70712774 G C ADAM21P1 RNA 0.27 TCGA-BA-4075-01 14 77703058 77703058 C T TMEM63C Missense_Mutation p.P212S 0.04 tolerated(0.53) benign(0.15) TCGA-BA-4075-01 14 78189539 78189539 G T SNW1 Missense_Mutation p.A372E 0.15 tolerated(0.29) possibly_damaging(0.774) TCGA-BA-4075-01 15 25490683 25490683 C G SNORD115-41 RNA 0.16 TCGA-BA-4075-01 15 27772605 27772605 A G GABRG3 Missense_Mutation p.T298A 0.11 deleterious(0) probably_damaging(0.998) TCGA-BA-4075-01 15 51696666 51696666 C T GLDN Silent p.F457F 0.08 TCGA-BA-4075-01 15 84651068 84651068 G T ADAMTSL3 Silent p.P896P 0.08 TCGA-BA-4075-01 16 21014470 21014470 G A DNAH3 Nonsense_Mutation p.Q2028* 0.24 TCGA-BA-4075-01 16 56718074 56718074 G A MT1X 3'UTR 0.21 TCGA-BA-4075-01 16 71509834 71509834 G A ZNF19 Missense_Mutation p.R206W 0.51 tolerated(0.16) probably_damaging(0.993) TCGA-BA-4075-01 16 84492949 84492949 A G ATP2C2 Missense_Mutation p.I764V 0.35 deleterious(0) probably_damaging(0.998) TCGA-BA-4075-01 17 10233707 10233707 C T MYH13 Missense_Mutation p.R811K 0.09 tolerated(0.07) benign(0.027) TCGA-BA-4075-01 17 15929998 15929998 G A TTC19 Missense_Mutation p.A326T 0.12 deleterious(0.01) probably_damaging(0.971) TCGA-BA-4075-01 17 2234293 2234293 G C TSR1 Missense_Mutation p.T536S 0.10 tolerated(0.06) possibly_damaging(0.759) TCGA-BA-4075-01 17 35913812 35913812 T A SYNRG Silent p.G671G 0.64 TCGA-BA-4075-01 17 38340838 38340838 A G RAPGEFL1 Silent p.L41L 0.17 TCGA-BA-4075-01 17 48823139 48823139 A T LUC7L3 Missense_Mutation p.K251M 0.26 deleterious(0) unknown(0) TCGA-BA-4075-01 17 7577017 7577017 A C TP53 Splice_Site p.X307_splice 0.65 TCGA-BA-4075-01 17 7829006 7829007 - T KCNAB3 Frame_Shift_Ins p.I178Nfs*2 0.16 TCGA-BA-4075-01 17 78338337 78338337 T A RNF213 Missense_Mutation p.V3952D 0.17 possibly_damaging(0.878) TCGA-BA-4075-01 17 78338338 78338338 C T RNF213 Silent p.V3952V 0.16 TCGA-BA-4075-01 17 9739771 9739771 T C GLP2R Missense_Mutation p.Y121H 0.31 deleterious(0) probably_damaging(0.988) TCGA-BA-4075-01 18 14787090 14787090 G A ANKRD30B Nonsense_Mutation p.W575* 0.05 TCGA-BA-4075-01 18 2538891 2538891 T G METTL4 3'UTR 0.20 TCGA-BA-4075-01 18 2747517 2747517 C T SMCHD1 Intron 0.15 TCGA-BA-4075-01 18 31323177 31323177 A G ASXL3 Missense_Mutation p.Q1122R 0.08 probably_damaging(0.993) TCGA-BA-4075-01 18 61305189 61305189 C G SERPINB4 Missense_Mutation p.D313H 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-BA-4075-01 19 21607117 21607117 A T ZNF493 Missense_Mutation p.K552N 0.19 deleterious(0.01) probably_damaging(0.976) TCGA-BA-4075-01 19 41223266 41223267 - T ITPKC Frame_Shift_Ins p.G77Rfs*20 0.10 TCGA-BA-4075-01 19 43237075 43237075 A T PSG3 Silent p.T190T 0.29 TCGA-BA-4075-01 19 46192545 46192545 C G SNRPD2 Intron 0.24 TCGA-BA-4075-01 19 50210775 50210775 C T CPT1C Silent p.R448R 0.06 TCGA-BA-4075-01 19 58420413 58420413 C T ZNF417 Silent p.K411K 0.03 TCGA-BA-4075-01 1 110086823 110086823 G A GPR61 Silent p.E393E 0.30 TCGA-BA-4075-01 1 110888253 110888253 A G RBM15 3'UTR 0.27 TCGA-BA-4075-01 1 111494644 111494644 G T LRIF1 Missense_Mutation p.P288T 0.38 deleterious(0) probably_damaging(0.958) TCGA-BA-4075-01 1 12954691 12954691 G T PRAMEF10 Missense_Mutation p.L198I 0.26 tolerated(1) benign(0.016) TCGA-BA-4075-01 1 150443141 150443141 A G RPRD2 Missense_Mutation p.I573V 0.06 tolerated_low_confidence(1) benign(0) TCGA-BA-4075-01 1 151146931 151146931 C T TMOD4 Silent p.L72L 0.20 TCGA-BA-4075-01 1 154987047 154987047 A G ZBTB7B Intron 0.08 TCGA-BA-4075-01 1 155744843 155744843 C T GON4L Missense_Mutation p.S767N 0.63 tolerated(0.65) benign(0) TCGA-BA-4075-01 1 156594410 156594410 G C HAPLN2 Missense_Mutation p.D192H 0.12 deleterious(0.02) probably_damaging(0.957) TCGA-BA-4075-01 1 167384851 167384851 C T POU2F1 Missense_Mutation p.P702L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-BA-4075-01 1 171303578 171303578 G T FMO4 Nonsense_Mutation p.E286* 0.19 TCGA-BA-4075-01 1 182026716 182026716 G A ZNF648 Nonsense_Mutation p.R144* 0.59 TCGA-BA-4075-01 1 186282062 186282062 T A TPR 3'UTR 0.66 TCGA-BA-4075-01 1 201013550 201013550 G T CACNA1S Missense_Mutation p.P1568H 0.05 deleterious(0) probably_damaging(0.954) TCGA-BA-4075-01 1 201868533 201868533 G A LMOD1 Silent p.P536P 0.07 TCGA-BA-4075-01 1 216850602 216850602 A T ESRRG Silent p.P101P 0.08 TCGA-BA-4075-01 1 22016569 22016569 A G USP48 Silent p.A969A 0.26 TCGA-BA-4075-01 1 242030178 242030178 A C EXO1 Missense_Mutation p.K363T 0.05 tolerated(0.07) benign(0.041) TCGA-BA-4075-01 1 243354341 243354341 C A CEP170 Missense_Mutation p.V363L 0.10 deleterious(0) probably_damaging(0.983) TCGA-BA-4075-01 1 247875881 247875881 C A OR6F1 Missense_Mutation p.M59I 0.06 deleterious(0) benign(0.117) TCGA-BA-4075-01 1 248402903 248402903 G A OR2M4 Missense_Mutation p.V225I 0.08 tolerated(0.11) benign(0.19) TCGA-BA-4075-01 1 31840248 31840248 G A FABP3 Missense_Mutation p.L114F 0.27 deleterious(0) probably_damaging(0.994) TCGA-BA-4075-01 1 39322630 39322630 A C RRAGC Missense_Mutation p.M121R 0.25 tolerated(0.06) benign(0.001) TCGA-BA-4075-01 1 45120269 45120269 G T TMEM53 Missense_Mutation p.L266I 0.12 tolerated(0.15) benign(0.135) TCGA-BA-4075-01 1 45120270 45120270 G T TMEM53 Missense_Mutation p.S265R 0.12 tolerated(0.26) benign(0.024) TCGA-BA-4075-01 1 46073529 46073529 G T NASP Nonsense_Mutation p.E316* 0.07 TCGA-BA-4075-01 1 8616534 8616534 C G RERE Missense_Mutation p.R242T 0.12 probably_damaging(0.994) TCGA-BA-4075-01 1 92177865 92177865 G A TGFBR3 Missense_Mutation p.L701F 0.29 deleterious(0) probably_damaging(1) TCGA-BA-4075-01 1 92177866 92177866 C A TGFBR3 Silent p.L700L 0.29 TCGA-BA-4075-01 20 20013236 20013236 A T NAA20 Silent p.V130V 0.14 TCGA-BA-4075-01 20 3128841 3128841 A C FASTKD5 Silent p.R292R 0.08 TCGA-BA-4075-01 20 35627071 35627071 T C RBL1 3'UTR 0.15 TCGA-BA-4075-01 20 39990016 39990016 C T EMILIN3 Silent p.L731L 0.40 TCGA-BA-4075-01 20 43752312 43752312 A G WFDC12 3'UTR 0.31 TCGA-BA-4075-01 21 31538876 31538876 C T CLDN17 Silent p.G20G 0.29 TCGA-BA-4075-01 21 43529775 43529775 C T UMODL1 Silent p.D541D 0.07 TCGA-BA-4075-01 22 38209492 38209492 C T GCAT Missense_Mutation p.A177V 0.26 deleterious(0.04) possibly_damaging(0.859) TCGA-BA-4075-01 22 39141797 39141797 G - SUN2 Frame_Shift_Del p.Y257Mfs*88 0.29 TCGA-BA-4075-01 22 40660900 40660900 G A TNRC6B Silent p.S222S 0.34 TCGA-BA-4075-01 22 41545804 41545804 A G EP300 Missense_Mutation p.I807V 0.28 unknown(0) TCGA-BA-4075-01 22 45579372 45579372 A - NUP50 Frame_Shift_Del p.Q392Rfs*10 0.24 TCGA-BA-4075-01 2 130792744 130792744 G T FAR2P1 5'Flank 0.10 TCGA-BA-4075-01 2 145157513 145157513 G T ZEB2 Missense_Mutation p.P414H 0.04 tolerated(0.09) benign(0.013) TCGA-BA-4075-01 2 152324992 152324992 A G RIF1 Missense_Mutation p.N2251S 0.22 tolerated(0.17) possibly_damaging(0.499) TCGA-BA-4075-01 2 168100963 168100963 T G XIRP2 Missense_Mutation p.F1021V 0.06 probably_damaging(0.999) TCGA-BA-4075-01 2 168106123 168106123 C A XIRP2 Missense_Mutation p.Q2741K 0.08 possibly_damaging(0.794) TCGA-BA-4075-01 2 176948592 176948592 C T EVX2 5'UTR 0.17 TCGA-BA-4075-01 2 189917666 189917666 G T COL5A2 Missense_Mutation p.Q878K 0.05 unknown(0) TCGA-BA-4075-01 2 228560672 228560672 T C SLC19A3 Missense_Mutation p.I369V 0.05 deleterious(0.05) benign(0.312) TCGA-BA-4075-01 2 233433773 233433773 G A EIF4E2 3'UTR 0.31 TCGA-BA-4075-01 2 25551583 25551583 C T DNMT3A Intron 0.26 TCGA-BA-4075-01 2 42991086 42991086 G A OXER1 Silent p.S78S 0.12 TCGA-BA-4075-01 2 97218002 97218002 C A ARID5A Silent p.V579V 0.21 TCGA-BA-4075-01 3 119458167 119458167 G A MAATS1 Silent p.Q509Q 0.10 TCGA-BA-4075-01 3 120365175 120365175 G A HGD Silent p.T196T 0.61 TCGA-BA-4075-01 3 142275364 142275364 T G ATR Missense_Mutation p.I647L 0.36 tolerated(0.21) benign(0.004) TCGA-BA-4075-01 3 149087698 149087698 T C TM4SF1 Intron 0.15 TCGA-BA-4075-01 3 158991547 158991547 T A IQCJ-SCHIP1 Intron 0.33 TCGA-BA-4075-01 3 158991548 158991548 C A IQCJ-SCHIP1 Intron 0.33 TCGA-BA-4075-01 3 164772993 164772993 C A SI Nonsense_Mutation p.G501* 0.04 TCGA-BA-4075-01 3 164772994 164772994 A T SI Missense_Mutation p.D500E 0.04 deleterious(0.01) possibly_damaging(0.793) TCGA-BA-4075-01 3 187416695 187416695 C T RTP2 Missense_Mutation p.R90H 0.30 deleterious(0) probably_damaging(0.998) TCGA-BA-4075-01 3 194790731 194790731 C A XXYLT1 Missense_Mutation p.A299S 0.07 tolerated(0.58) benign(0.068) TCGA-BA-4075-01 3 33427049 33427049 A G FBXL2 Silent p.T407T 0.05 TCGA-BA-4075-01 3 45500356 45500356 T G LARS2 Missense_Mutation p.I243S 0.36 deleterious(0) probably_damaging(0.962) TCGA-BA-4075-01 3 98251043 98251043 G A GPR15 Missense_Mutation p.G56R 0.07 tolerated(0.11) possibly_damaging(0.611) TCGA-BA-4075-01 4 110890205 110890205 G T EGF Nonsense_Mutation p.E552* 0.06 TCGA-BA-4075-01 4 156751052 156751052 G T ASIC5 Missense_Mutation p.P492T 0.07 tolerated_low_confidence(0.24) benign(0.055) TCGA-BA-4075-01 4 15709251 15709251 C G BST1 Missense_Mutation p.R145G 0.32 tolerated(1) benign(0.036) TCGA-BA-4075-01 4 178911716 178911716 G A LINC01098 3'UTR 0.07 TCGA-BA-4075-01 4 187542087 187542088 - A FAT1 Frame_Shift_Ins p.E1885* 0.15 TCGA-BA-4075-01 4 3769731 3769731 C T ADRA2C 3'UTR 0.25 TCGA-BA-4075-01 4 44631497 44631497 C T YIPF7 Missense_Mutation p.D141N 0.25 deleterious(0.02) probably_damaging(1) TCGA-BA-4075-01 4 54424120 54424120 G A LNX1 Intron 0.29 TCGA-BA-4075-01 4 70360946 70360946 T C UGT2B4 Missense_Mutation p.K212E 0.26 tolerated(0.11) possibly_damaging(0.786) TCGA-BA-4075-01 4 80328069 80328069 G T GK2 Missense_Mutation p.T429N 0.29 deleterious(0) probably_damaging(0.928) TCGA-BA-4075-01 5 132073154 132073154 G C KIF3A 5'UTR 0.24 TCGA-BA-4075-01 5 138356974 138356974 T C SIL1 Missense_Mutation p.N218S 0.36 deleterious(0) probably_damaging(0.999) TCGA-BA-4075-01 5 140250178 140250178 G A PCDHA11 Missense_Mutation p.R497Q 0.11 deleterious_low_confidence(0.03) benign(0.341) TCGA-BA-4075-01 5 141041799 141041799 G A ARAP3 Missense_Mutation p.R942W 0.30 deleterious(0) probably_damaging(1) TCGA-BA-4075-01 5 141358230 141358230 T C RNF14 Silent p.C223C 0.34 TCGA-BA-4075-01 5 1488528 1488528 G A LPCAT1 Silent p.T215T 0.03 TCGA-BA-4075-01 5 42801329 42801329 A T SEPP1 Missense_Mutation p.H213Q 0.04 tolerated(0.23) benign(0) TCGA-BA-4075-01 5 72187641 72187641 A G TNPO1 Missense_Mutation p.Y569C 0.29 deleterious(0.04) possibly_damaging(0.707) TCGA-BA-4075-01 6 10874289 10874289 G A GCM2 Missense_Mutation p.S487F 0.07 deleterious(0.02) benign(0.401) TCGA-BA-4075-01 6 148865297 148865297 C T SASH1 Silent p.S897S 0.03 TCGA-BA-4075-01 6 170105073 170105073 G T C6orf120 3'UTR 0.40 TCGA-BA-4075-01 6 26370583 26370583 G T BTN3A2 Missense_Mutation p.G156V 0.04 tolerated(0.43) probably_damaging(1) TCGA-BA-4075-01 6 31807475 31807475 A G C6orf48 3'UTR 0.12 TCGA-BA-4075-01 7 130295823 130295823 C A COPG2 Silent p.G246G 0.06 TCGA-BA-4075-01 7 130295824 130295824 C A COPG2 Missense_Mutation p.G246V 0.06 deleterious(0) benign(0.189) TCGA-BA-4075-01 7 134889075 134889075 G A WDR91 Missense_Mutation p.A279V 0.07 tolerated(0.48) benign(0.017) TCGA-BA-4075-01 7 142630518 142630518 G T TRPV5 Missense_Mutation p.S13R 0.06 tolerated_low_confidence(0.15) benign(0.078) TCGA-BA-4075-01 7 147259261 147259261 A T CNTNAP2 Missense_Mutation p.K603N 0.13 deleterious(0) possibly_damaging(0.866) TCGA-BA-4075-01 7 150325305 150325305 G T GIMAP6 Silent p.L127L 0.04 TCGA-BA-4075-01 7 27150371 27150371 C A HOXA3 5'UTR 0.07 TCGA-BA-4075-01 7 2956977 2956977 G A CARD11 Missense_Mutation p.R884W 0.13 deleterious(0) possibly_damaging(0.884) TCGA-BA-4075-01 7 30492295 30492295 G A NOD1 Silent p.D246D 0.03 TCGA-BA-4075-01 7 37955852 37955852 C T SFRP4 Silent p.P96P 0.11 TCGA-BA-4075-01 7 40498705 40498705 G T SUGCT Missense_Mutation p.L305F 0.26 deleterious(0.01) possibly_damaging(0.899) TCGA-BA-4075-01 7 44579253 44579253 C A NPC1L1 Missense_Mutation p.G248V 0.03 deleterious(0.02) benign(0.207) TCGA-BA-4075-01 7 47933651 47933651 C A PKD1L1 Missense_Mutation p.Q759H 0.11 deleterious(0) probably_damaging(0.998) TCGA-BA-4075-01 7 55231431 55231431 C A EGFR Missense_Mutation p.P546Q 0.04 tolerated(0.29) probably_damaging(0.96) TCGA-BA-4075-01 7 55238145 55238145 C T EGFR Intron 0.26 TCGA-BA-4075-01 7 7278537 7278537 A G C1GALT1 Missense_Mutation p.Y291C 0.67 deleterious(0) possibly_damaging(0.806) TCGA-BA-4075-01 7 82584021 82584021 G T PCLO Missense_Mutation p.T2083N 0.05 unknown(0) TCGA-BA-4075-01 7 90894572 90894572 A T FZD1 Missense_Mutation p.D126V 0.17 deleterious(0) probably_damaging(0.979) TCGA-BA-4075-01 8 100155309 100155309 G C VPS13B Missense_Mutation p.D587H 0.03 tolerated(0.29) probably_damaging(0.953) TCGA-BA-4075-01 8 18430163 18430163 C T PSD3 Missense_Mutation p.G887R 0.06 deleterious(0.01) probably_damaging(0.917) TCGA-BA-4075-01 8 23191125 23191125 G A LOXL2 Missense_Mutation p.S252L 0.08 tolerated(0.35) benign(0.003) TCGA-BA-4075-01 8 26627907 26627907 C T ADRA1A Missense_Mutation p.R387K 0.05 tolerated_low_confidence(0.66) benign(0.003) TCGA-BA-4075-01 8 30657106 30657106 C A PPP2CB Nonsense_Mutation p.G90* 0.04 TCGA-BA-4075-01 8 61778180 61778180 C T CHD7 Silent p.L2894L 0.19 TCGA-BA-4075-01 8 70585056 70585056 G A SLCO5A1 3'UTR 0.18 TCGA-BA-4075-01 8 77768487 77768487 C T ZFHX4 Silent p.P3110P 0.09 TCGA-BA-4075-01 8 86127184 86127184 T A C8orf59 Missense_Mutation p.K66I 0.23 deleterious(0) probably_damaging(0.918) TCGA-BA-4075-01 9 100433449 100433449 G A NCBP1 Missense_Mutation p.V781M 0.17 deleterious(0.01) probably_damaging(0.915) TCGA-BA-4075-01 9 102606941 102606941 C G NR4A3 Missense_Mutation p.T433S 0.18 tolerated(0.56) benign(0.001) TCGA-BA-4075-01 9 105767514 105767514 G C CYLC2 Missense_Mutation p.D201H 0.11 deleterious(0) unknown(0) TCGA-BA-4075-01 9 107267227 107267227 C A OR13F1 Silent p.I228I 0.47 TCGA-BA-4075-01 9 117187304 117187304 C A DFNB31 Silent p.G389G 0.04 TCGA-BA-4075-01 9 127572376 127572376 C T OLFML2A Silent p.I548I 0.51 TCGA-BA-4075-01 9 136324143 136324143 G A ADAMTS13 Silent p.Q1375Q 0.05 TCGA-BA-4075-01 9 139412299 139412299 C T NOTCH1 Missense_Mutation p.C449Y 0.73 deleterious(0) probably_damaging(1) TCGA-BA-4075-01 9 139563027 139563027 C T EGFL7 Silent p.V33V 0.07 TCGA-BA-4075-01 9 19300201 19300201 A T DENND4C Missense_Mutation p.T395S 0.06 deleterious(0.05) benign(0.168) TCGA-BA-4075-01 9 21971209 21971209 T A CDKN2A Splice_Site p.X51_splice 0.55 TCGA-BA-4075-01 9 2719000 2719000 G A KCNV2 Missense_Mutation p.G421S 0.12 deleterious(0.03) probably_damaging(0.975) TCGA-BA-4075-01 X 125298829 125298829 T A DCAF12L2 Missense_Mutation p.Q360L 0.11 deleterious(0.03) benign(0.342) TCGA-BA-4075-01 X 125298830 125298830 G T DCAF12L2 Missense_Mutation p.Q360K 0.11 tolerated(0.28) benign(0.118) TCGA-BA-4075-01 X 134427679 134427679 C G ZNF75D Missense_Mutation p.E130Q 0.62 tolerated(0.06) benign(0.078) TCGA-BA-4075-01 X 1501501 1501501 A T IL3RA 3'UTR 0.43 TCGA-BA-4075-01 X 19555888 19555888 T G SH3KBP1 Missense_Mutation p.K635Q 0.69 deleterious(0.02) probably_damaging(0.997) TCGA-BA-4075-01 X 54209176 54209176 C G FAM120C Silent p.A152A 0.16 TCGA-BA-4076-01 10 104486494 104486494 G T SFXN2 Missense_Mutation p.R34L 0.36 tolerated(1) benign(0.188) TCGA-BA-4076-01 10 117075091 117075091 G T ATRNL1 Missense_Mutation p.C961F 0.28 deleterious(0.02) probably_damaging(1) TCGA-BA-4076-01 10 119044034 119044034 T C PDZD8 Missense_Mutation p.E737G 0.51 deleterious(0.02) probably_damaging(0.996) TCGA-BA-4076-01 10 134885501 134885501 G T GPR123 Missense_Mutation p.W87L 0.33 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-BA-4076-01 10 18254530 18254530 G T SLC39A12 Missense_Mutation p.C221F 0.50 deleterious(0) probably_damaging(0.996) TCGA-BA-4076-01 10 23482812 23482812 C A PTF1A Missense_Mutation p.P322T 0.33 deleterious_low_confidence(0) unknown(0) TCGA-BA-4076-01 10 24802317 24802317 A T KIAA1217 Nonsense_Mutation p.R711* 0.38 TCGA-BA-4076-01 10 25883321 25883321 C A GPR158 Missense_Mutation p.P665T 0.30 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 10 25883322 25883322 C A GPR158 Missense_Mutation p.P665Q 0.30 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 10 28284017 28284017 C A ARMC4 Nonsense_Mutation p.G19* 0.40 TCGA-BA-4076-01 10 29600132 29600132 A G LYZL1 3'UTR 0.45 TCGA-BA-4076-01 10 43882406 43882406 G A HNRNPF Silent p.F309F 0.44 TCGA-BA-4076-01 10 45941034 45941034 C A ALOX5 Missense_Mutation p.L642I 0.37 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 10 54074250 54074250 C T DKK1 Missense_Mutation p.A19V 0.37 tolerated(0.57) benign(0.002) TCGA-BA-4076-01 10 56106124 56106124 C A PCDH15 Splice_Site p.X198_splice 0.40 TCGA-BA-4076-01 10 59955934 59955934 T C IPMK Missense_Mutation p.D385G 0.41 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 10 72496543 72496543 C A ADAMTS14 Silent p.P534P 0.34 TCGA-BA-4076-01 10 85992071 85992071 A G LRIT1 Missense_Mutation p.V495A 0.32 deleterious(0) possibly_damaging(0.794) TCGA-BA-4076-01 10 85992310 85992310 C A LRIT1 Silent p.L415L 0.34 TCGA-BA-4076-01 10 91174431 91174431 G C IFIT5 5'UTR 0.52 TCGA-BA-4076-01 10 91479299 91479299 A C KIF20B Missense_Mutation p.I520L 0.39 deleterious(0.04) probably_damaging(0.949) TCGA-BA-4076-01 10 97918677 97918677 A T ZNF518A RNA 0.42 TCGA-BA-4076-01 11 107299911 107299911 T A CWF19L2 Missense_Mutation p.R349S 0.67 tolerated(0.12) benign(0.097) TCGA-BA-4076-01 11 110108214 110108214 T A RDX Intron 0.63 TCGA-BA-4076-01 11 129306871 129306871 C T BARX2 Missense_Mutation p.T138I 0.65 deleterious(0) probably_damaging(0.994) TCGA-BA-4076-01 11 130343610 130343610 G T ADAMTS15 Missense_Mutation p.R916L 0.77 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 11 132527042 132527042 T A OPCML Missense_Mutation p.T114S 0.67 deleterious(0) possibly_damaging(0.542) TCGA-BA-4076-01 11 17095985 17095985 C G RPS13 Missense_Mutation p.A151P 0.31 deleterious(0) probably_damaging(0.953) TCGA-BA-4076-01 11 22363186 22363186 C A SLC17A6 Missense_Mutation p.L67M 0.48 tolerated(0.16) benign(0.058) TCGA-BA-4076-01 11 27371676 27371676 C A CCDC34 Intron 0.38 TCGA-BA-4076-01 11 27679873 27679873 T C BDNF Missense_Mutation p.N162S 0.44 tolerated(0.32) benign(0) TCGA-BA-4076-01 11 33358705 33358705 G T HIPK3 Nonsense_Mutation p.E436* 0.45 TCGA-BA-4076-01 11 49974253 49974253 T C OR4C13 Silent p.N93N 0.42 TCGA-BA-4076-01 11 5020434 5020434 G C OR51L1 Silent p.G74G 0.36 TCGA-BA-4076-01 11 5345574 5345574 G A OR51B2 5'UTR 0.36 TCGA-BA-4076-01 11 55110931 55110931 T A OR4A16 Nonsense_Mutation p.C85* 0.38 TCGA-BA-4076-01 11 55135423 55135423 C G OR4A15 Missense_Mutation p.L22V 0.29 deleterious_low_confidence(0.03) benign(0) TCGA-BA-4076-01 11 55587238 55587238 G T OR5D18 Missense_Mutation p.G45W 0.46 deleterious(0) probably_damaging(0.992) TCGA-BA-4076-01 11 55606809 55606809 T A OR5D16 Silent p.S194S 0.36 TCGA-BA-4076-01 11 55703661 55703661 G T OR5I1 Missense_Mutation p.D72E 0.42 deleterious(0) benign(0.159) TCGA-BA-4076-01 11 55761243 55761243 G A OR5F1 Missense_Mutation p.P287S 0.32 deleterious(0) probably_damaging(0.989) TCGA-BA-4076-01 11 55927515 55927515 G C OR8K5 Silent p.S93S 0.44 TCGA-BA-4076-01 11 56230837 56230837 C A OR5M9 Missense_Mutation p.G14V 0.36 deleterious(0) probably_damaging(0.983) TCGA-BA-4076-01 11 56409494 56409494 A T OR5AP2 Missense_Mutation p.L141H 0.30 tolerated(0.19) possibly_damaging(0.832) TCGA-BA-4076-01 11 57118349 57118349 C T P2RX3 Silent p.S273S 0.40 TCGA-BA-4076-01 11 57379319 57379319 G T SERPING1 Nonsense_Mutation p.E387* 0.36 TCGA-BA-4076-01 11 57970930 57970930 A G OR1S2 Missense_Mutation p.S242P 0.31 tolerated(1) probably_damaging(0.966) TCGA-BA-4076-01 11 5799430 5799430 G C OR52N5 Silent p.L145L 0.46 TCGA-BA-4076-01 11 59224737 59224737 T A OR4D6 Missense_Mutation p.F102I 0.43 deleterious(0) probably_damaging(0.996) TCGA-BA-4076-01 11 60906239 60906239 C A VPS37C Silent p.A21A 0.34 TCGA-BA-4076-01 11 62299641 62299641 G C AHNAK Missense_Mutation p.P750A 0.36 probably_damaging(0.925) TCGA-BA-4076-01 11 62398539 62398539 G A GANAB Silent p.S393S 0.43 TCGA-BA-4076-01 11 63967640 63967640 G T STIP1 Splice_Site p.X374_splice 0.43 TCGA-BA-4076-01 11 64794890 64794890 C G SNX15 5'UTR 0.56 TCGA-BA-4076-01 11 65480261 65480261 A G KAT5 Missense_Mutation p.K68R 0.33 tolerated(0.58) benign(0.283) TCGA-BA-4076-01 11 67049153 67049153 G T ADRBK1 Silent p.A260A 0.41 TCGA-BA-4076-01 11 70333070 70333070 C A SHANK2 Nonsense_Mutation p.E1111* 0.06 TCGA-BA-4076-01 11 70333674 70333674 G A SHANK2 Silent p.C909C 0.09 TCGA-BA-4076-01 11 7079072 7079072 G C NLRP14 Missense_Mutation p.R819T 0.30 deleterious(0.01) possibly_damaging(0.881) TCGA-BA-4076-01 11 85309761 85309761 T A DLG2 5'UTR 0.52 TCGA-BA-4076-01 11 86161369 86161369 C A ME3 Missense_Mutation p.V331L 0.62 tolerated(0.07) benign(0.153) TCGA-BA-4076-01 11 89892474 89892474 G T NAALAD2 Nonsense_Mutation p.G320* 0.68 TCGA-BA-4076-01 11 93844770 93844770 C A HEPHL1 Missense_Mutation p.N1092K 0.67 tolerated(0.81) benign(0.001) TCGA-BA-4076-01 12 107713225 107713225 C T BTBD11 Silent p.L170L 0.14 TCGA-BA-4076-01 12 10954553 10954553 A G TAS2R7 Missense_Mutation p.L206P 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-BA-4076-01 12 109872840 109872840 A G MYO1H Splice_Site p.X672_splice 0.36 TCGA-BA-4076-01 12 11174609 11174609 A C TAS2R19 Missense_Mutation p.F188V 0.41 deleterious(0) probably_damaging(0.954) TCGA-BA-4076-01 12 114836427 114836427 G C TBX5 Missense_Mutation p.S154C 0.29 deleterious(0.02) possibly_damaging(0.856) TCGA-BA-4076-01 12 11546131 11546131 G A PRB2 Missense_Mutation p.S294F 0.02 deleterious(0.05) unknown(0) TCGA-BA-4076-01 12 117603318 117603318 T C FBXO21 Missense_Mutation p.Y433C 0.41 deleterious(0) probably_damaging(0.994) TCGA-BA-4076-01 12 133363016 133363016 T C GOLGA3 Missense_Mutation p.Q1011R 0.24 tolerated(0.12) probably_damaging(0.998) TCGA-BA-4076-01 12 20806882 20806882 G C PDE3A Missense_Mutation p.G976A 0.33 deleterious(0) probably_damaging(0.98) TCGA-BA-4076-01 12 24736561 24736561 G C LINC00477 RNA 0.33 TCGA-BA-4076-01 12 27573326 27573326 T C ARNTL2 Intron 0.39 TCGA-BA-4076-01 12 49445506 49445506 A - KMT2D Frame_Shift_Del p.S654Pfs*276 0.32 TCGA-BA-4076-01 12 51753071 51753071 C A GALNT6 Missense_Mutation p.V405L 0.41 deleterious(0) probably_damaging(0.997) TCGA-BA-4076-01 12 55641868 55641868 T A OR6C74 Missense_Mutation p.V266E 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BA-4076-01 12 6976728 6976728 G C TPI1 Missense_Mutation p.A37P 0.29 deleterious_low_confidence(0) benign(0.156) TCGA-BA-4076-01 12 72090220 72090220 A G TMEM19 Silent p.L83L 0.32 TCGA-BA-4076-01 12 72278758 72278758 A G TBC1D15 Missense_Mutation p.K171E 0.34 tolerated(0.19) benign(0.044) TCGA-BA-4076-01 12 7636217 7636217 C G CD163 Missense_Mutation p.W945S 0.46 deleterious(0) probably_damaging(0.995) TCGA-BA-4076-01 12 78400963 78400963 A G NAV3 Missense_Mutation p.K549E 0.41 tolerated(0.29) possibly_damaging(0.763) TCGA-BA-4076-01 12 85255560 85255560 G A SLC6A15 Missense_Mutation p.P682S 0.37 tolerated(0.1) benign(0.001) TCGA-BA-4076-01 12 85450746 85450746 G T LRRIQ1 Missense_Mutation p.M725I 0.39 tolerated(0.91) benign(0) TCGA-BA-4076-01 13 103519118 103519118 G T BIVM-ERCC5 Missense_Mutation p.R1245L 0.42 deleterious(0) probably_damaging(0.969) TCGA-BA-4076-01 13 26793609 26793609 G C RNF6 Missense_Mutation p.L60V 0.45 deleterious(0) probably_damaging(0.994) TCGA-BA-4076-01 13 28011271 28011271 G A MTIF3 Silent p.D200D 0.35 TCGA-BA-4076-01 13 37269514 37269514 C A SERTM1 Missense_Mutation p.S100Y 0.25 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BA-4076-01 13 37619383 37619383 C - SUPT20H Splice_Site p.X98_splice 0.25 TCGA-BA-4076-01 13 47351749 47351749 C A ESD Missense_Mutation p.A204S 0.37 tolerated(0.1) possibly_damaging(0.794) TCGA-BA-4076-01 13 52520593 52520593 G T ATP7B Missense_Mutation p.Q963K 0.37 tolerated(0.8) benign(0.006) TCGA-BA-4076-01 13 70413204 70413204 G T KLHL1 Missense_Mutation p.P440T 0.44 deleterious(0) probably_damaging(0.964) TCGA-BA-4076-01 13 84454928 84454928 C A SLITRK1 Missense_Mutation p.V239L 0.41 tolerated(0.09) possibly_damaging(0.688) TCGA-BA-4076-01 13 97638980 97638980 G C OXGR1 3'UTR 0.44 TCGA-BA-4076-01 14 106829737 106829737 C G IGHV4-34 Missense_Mutation p.E76Q 0.43 tolerated(0.31) benign(0.039) TCGA-BA-4076-01 14 106994058 106994058 G T IGHV3-48 Missense_Mutation p.S36Y 0.30 deleterious_low_confidence(0.02) benign(0.292) TCGA-BA-4076-01 14 20768960 20768960 C A TTC5 Missense_Mutation p.A68S 0.56 tolerated(0.1) possibly_damaging(0.742) TCGA-BA-4076-01 14 21491405 21491405 C T NDRG2 Missense_Mutation p.A24T 0.05 tolerated(0.71) benign(0.002) TCGA-BA-4076-01 14 23886825 23886825 G A MYH7 Silent p.L1414L 0.61 TCGA-BA-4076-01 14 28733824 28733824 A G BNIP3P1 RNA 0.53 TCGA-BA-4076-01 14 38679295 38679295 T A SSTR1 Missense_Mutation p.L234Q 0.33 tolerated(0.19) possibly_damaging(0.825) TCGA-BA-4076-01 14 52781369 52781369 G A PTGER2 Missense_Mutation p.G35R 0.74 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 14 63779732 63779732 C A GPHB5 RNA 0.10 TCGA-BA-4076-01 14 75230942 75230942 G T YLPM1 Silent p.P250P 0.65 TCGA-BA-4076-01 14 75500173 75500173 C G MLH3 Missense_Mutation p.V1222L 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-BA-4076-01 14 88434807 88434807 T C GALC Silent p.A260A 0.43 TCGA-BA-4076-01 14 89041117 89041117 G T ZC3H14 Missense_Mutation p.E314D 0.33 tolerated(0.52) benign(0.065) TCGA-BA-4076-01 14 94394802 94394802 G T FAM181A Silent p.R119R 0.38 TCGA-BA-4076-01 15 22368976 22368976 C T OR4M2 Missense_Mutation p.T134I 0.09 deleterious(0.02) benign(0.075) TCGA-BA-4076-01 15 22382664 22382664 C A OR4N4 Silent p.G64G 0.09 TCGA-BA-4076-01 15 22382712 22382712 G A OR4N4 Silent p.R80R 0.04 TCGA-BA-4076-01 15 22709630 22709630 A G AC116165.1 5'Flank 0.16 TCGA-BA-4076-01 15 24921415 24921415 C T NPAP1 Missense_Mutation p.A134V 0.82 tolerated(0.92) possibly_damaging(0.8) TCGA-BA-4076-01 15 24922323 24922323 C A NPAP1 Missense_Mutation p.L437I 0.84 tolerated(0.15) benign(0.063) TCGA-BA-4076-01 15 28230301 28230301 T A OCA2 Missense_Mutation p.M425L 0.93 tolerated(0.72) benign(0.272) TCGA-BA-4076-01 15 48752447 48752447 G A FBN1 Silent p.P1764P 0.80 TCGA-BA-4076-01 15 49663561 49663561 G T FAM227B Missense_Mutation p.P350T 0.80 tolerated(0.07) possibly_damaging(0.63) TCGA-BA-4076-01 15 50515307 50515307 A G SLC27A2 Missense_Mutation p.N373S 0.42 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 15 54557618 54557618 C A UNC13C Missense_Mutation p.Q1248K 0.45 tolerated_low_confidence(0.06) benign(0.156) TCGA-BA-4076-01 15 58357852 58357852 G T ALDH1A2 5'UTR 0.76 TCGA-BA-4076-01 15 69335139 69335139 G T NOX5 Silent p.S547S 0.84 TCGA-BA-4076-01 15 79749833 79749833 G C KIAA1024 Missense_Mutation p.K448N 0.77 tolerated(0.2) benign(0.011) TCGA-BA-4076-01 15 93015432 93015432 C A C15orf32 Missense_Mutation p.D18E 0.81 tolerated_low_confidence(0.39) possibly_damaging(0.866) TCGA-BA-4076-01 16 1536306 1536306 G T PTX4 Missense_Mutation p.D352E 0.45 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 16 20430642 20430642 G A ACSM5 Missense_Mutation p.D170N 0.41 tolerated(0.05) possibly_damaging(0.533) TCGA-BA-4076-01 16 20787221 20787221 C A ACSM3 Silent p.R94R 0.43 TCGA-BA-4076-01 16 21213115 21213115 C T ZP2 Missense_Mutation p.M472I 0.40 tolerated(0.43) benign(0.026) TCGA-BA-4076-01 16 23847649 23847649 C G PRKCB Missense_Mutation p.S51R 0.33 deleterious(0) probably_damaging(0.978) TCGA-BA-4076-01 16 24980015 24980015 C A ARHGAP17 Missense_Mutation p.K117N 0.44 tolerated(0.07) possibly_damaging(0.665) TCGA-BA-4076-01 16 3778856 3778856 G A CREBBP Silent p.P2064P 0.35 TCGA-BA-4076-01 16 4855258 4855258 C A GLYR1 Silent p.V547V 0.31 TCGA-BA-4076-01 16 53503839 53503839 C G RBL2 Missense_Mutation p.P663A 0.54 deleterious(0.01) possibly_damaging(0.676) TCGA-BA-4076-01 16 69184450 69184450 G T CIRH1A Missense_Mutation p.S250I 0.83 deleterious(0) probably_damaging(0.98) TCGA-BA-4076-01 16 71483245 71483245 T C ZNF23 Missense_Mutation p.E228G 0.08 deleterious(0) probably_damaging(0.955) TCGA-BA-4076-01 16 732421 732421 C T STUB1 Missense_Mutation p.P282S 0.43 tolerated(0.07) probably_damaging(0.911) TCGA-BA-4076-01 16 75269450 75269450 C A BCAR1 Silent p.P495P 0.78 TCGA-BA-4076-01 16 81094970 81094970 C T C16orf46 Silent p.Q328Q 0.36 TCGA-BA-4076-01 17 15134181 15134181 C A PMP22 3'UTR 0.42 TCGA-BA-4076-01 17 16835779 16835779 C T TBC1D27 RNA 0.45 TCGA-BA-4076-01 17 21319071 21319071 G T KCNJ12 Missense_Mutation p.E139D 0.20 deleterious(0) probably_damaging(0.957) TCGA-BA-4076-01 17 2238189 2238189 T A TSR1 Silent p.T186T 0.45 TCGA-BA-4076-01 17 29220783 29220783 T A ATAD5 Missense_Mutation p.C1638S 0.36 tolerated(0.66) benign(0.008) TCGA-BA-4076-01 17 31107692 31107692 C T MYO1D Missense_Mutation p.R69H 0.47 deleterious(0.03) possibly_damaging(0.841) TCGA-BA-4076-01 17 61987064 61987064 C A CSHL1 3'Flank 0.40 TCGA-BA-4076-01 17 7230998 7230998 C T NEURL4 Missense_Mutation p.R163H 0.39 deleterious(0) possibly_damaging(0.765) TCGA-BA-4076-01 17 7578523 7578523 T G TP53 Missense_Mutation p.Q136P 0.38 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 17 7579470 7579471 - G TP53 Frame_Shift_Ins p.V73Rfs*76 0.40 TCGA-BA-4076-01 17 8044494 8044494 T A PER1 Missense_Mutation p.Q1255H 0.40 tolerated_low_confidence(0.07) benign(0.001) TCGA-BA-4076-01 17 8044495 8044495 T A PER1 Missense_Mutation p.Q1255L 0.41 deleterious_low_confidence(0.01) benign(0.023) TCGA-BA-4076-01 17 8732225 8732225 G T PIK3R6 Silent p.L324L 0.37 TCGA-BA-4076-01 18 14852103 14852103 G A ANKRD30B Missense_Mutation p.R1268Q 0.17 tolerated(0.1) benign(0.002) TCGA-BA-4076-01 18 18600198 18600198 C A ROCK1 Missense_Mutation p.Q425H 0.30 tolerated(0.13) benign(0.11) TCGA-BA-4076-01 18 21124402 21124402 C A NPC1 Missense_Mutation p.G679V 0.75 deleterious(0) probably_damaging(0.983) TCGA-BA-4076-01 18 2751280 2751280 T C SMCHD1 Silent p.F1390F 0.05 TCGA-BA-4076-01 18 2946157 2946157 T C LPIN2 Intron 0.05 TCGA-BA-4076-01 18 29847681 29847681 C T GAREM 3'UTR 0.75 TCGA-BA-4076-01 18 31318971 31318971 G A ASXL3 Missense_Mutation p.D535N 0.18 benign(0.111) TCGA-BA-4076-01 18 31326256 31326256 G T ASXL3 Missense_Mutation p.Q2148H 0.65 possibly_damaging(0.786) TCGA-BA-4076-01 18 40850486 40850486 G T SYT4 Silent p.G366G 0.60 TCGA-BA-4076-01 18 40857357 40857357 C G SYT4 5'UTR 0.67 TCGA-BA-4076-01 18 47814012 47814012 T A CXXC1 5'Flank 0.75 TCGA-BA-4076-01 18 6882171 6882171 T G ARHGAP28 Silent p.A283A 0.60 TCGA-BA-4076-01 18 6882172 6882172 G T ARHGAP28 Missense_Mutation p.D284Y 0.61 deleterious(0.03) probably_damaging(0.996) TCGA-BA-4076-01 18 7015791 7015791 T C LAMA1 Missense_Mutation p.H1019R 0.21 deleterious(0.01) possibly_damaging(0.906) TCGA-BA-4076-01 18 9563520 9563520 T A PPP4R1 Silent p.L534L 0.22 TCGA-BA-4076-01 19 15807871 15807871 G A CYP4F12 Silent p.E517E 0.35 TCGA-BA-4076-01 19 22155761 22155761 G T ZNF208 Missense_Mutation p.P692H 0.29 deleterious(0.01) possibly_damaging(0.541) TCGA-BA-4076-01 19 22574982 22574982 C T ZNF98 Missense_Mutation p.C352Y 0.25 deleterious(0.01) probably_damaging(1) TCGA-BA-4076-01 19 22780133 22780133 G A RN7SL860P 5'Flank 0.40 TCGA-BA-4076-01 19 22941189 22941189 G T ZNF99 Missense_Mutation p.P508T 0.43 deleterious(0) possibly_damaging(0.66) TCGA-BA-4076-01 19 23159469 23159469 C A ZNF728 Nonsense_Mutation p.G224* 0.37 TCGA-BA-4076-01 19 30312979 30312979 A G CCNE1 Missense_Mutation p.D261G 0.45 deleterious(0.01) benign(0.344) TCGA-BA-4076-01 19 41812564 41812564 G T HNRNPUL1 3'UTR 0.40 TCGA-BA-4076-01 19 4454069 4454069 C A UBXN6 Missense_Mutation p.K35N 0.79 tolerated(0.17) benign(0.174) TCGA-BA-4076-01 19 45996415 45996415 C A RTN2 Intron 0.37 TCGA-BA-4076-01 19 49526318 49526318 C T CGB Missense_Mutation p.C108Y 0.12 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 19 49536303 49536303 G A CGB2 Missense_Mutation p.C106Y 0.30 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 19 49552062 49552062 A T CGB8 5'UTR 0.46 TCGA-BA-4076-01 19 51381931 51381931 G A KLK2 3'UTR 0.45 TCGA-BA-4076-01 19 51631242 51631242 G T SIGLEC9 Missense_Mutation p.G351V 0.26 tolerated(0.22) benign(0.122) TCGA-BA-4076-01 19 53793781 53793781 C A BIRC8 5'UTR 0.35 TCGA-BA-4076-01 19 53856114 53856114 G T ZNF845 Missense_Mutation p.S729I 0.33 tolerated(0.39) possibly_damaging(0.664) TCGA-BA-4076-01 19 54782747 54782747 C - LILRB2 Frame_Shift_Del p.G292Afs*25 0.45 TCGA-BA-4076-01 19 54822656 54822656 G T LILRA5 Intron 0.34 TCGA-BA-4076-01 19 54868568 54868568 C T LAIR1 Silent p.T141T 0.42 TCGA-BA-4076-01 19 55087544 55087544 T A LILRA2 Missense_Mutation p.L408H 0.41 tolerated(1) benign(0.001) TCGA-BA-4076-01 19 55106644 55106644 C A LILRA1 Silent p.V146V 0.42 TCGA-BA-4076-01 19 55341657 55341657 C A KIR3DL1 Missense_Mutation p.P421H 0.84 tolerated(0.23) probably_damaging(0.914) TCGA-BA-4076-01 19 56300317 56300317 G C NLRP11 Missense_Mutation p.A904G 0.37 deleterious(0.02) possibly_damaging(0.907) TCGA-BA-4076-01 19 56390176 56390176 T A NLRP4 Missense_Mutation p.L905I 0.46 tolerated(0.19) possibly_damaging(0.668) TCGA-BA-4076-01 19 56539074 56539074 C A NLRP5 Missense_Mutation p.A492D 0.44 deleterious(0.01) benign(0.273) TCGA-BA-4076-01 19 57646170 57646170 A T ZIM3 3'UTR 0.31 TCGA-BA-4076-01 19 57647166 57647166 G C ZIM3 Nonsense_Mutation p.S180* 0.57 TCGA-BA-4076-01 19 57723577 57723577 A C ZNF264 Missense_Mutation p.Y371S 0.27 deleterious(0) probably_damaging(0.956) TCGA-BA-4076-01 19 9071035 9071035 T C MUC16 Missense_Mutation p.I5471V 0.87 unknown(0) TCGA-BA-4076-01 1 101197026 101197026 G C VCAM1 Missense_Mutation p.E493Q 0.34 tolerated(0.08) probably_damaging(0.976) TCGA-BA-4076-01 1 103343529 103343529 A C COL11A1 3'UTR 0.43 TCGA-BA-4076-01 1 103431074 103431074 G T COL11A1 Missense_Mutation p.P962H 0.32 unknown(0) TCGA-BA-4076-01 1 110022063 110022063 C A SYPL2 Missense_Mutation p.P238T 0.31 tolerated(0.25) benign(0.005) TCGA-BA-4076-01 1 112028408 112028408 T G ADORA3 Silent p.V309V 0.46 TCGA-BA-4076-01 1 12557603 12557603 G C VPS13D Missense_Mutation p.G4238R 0.34 probably_damaging(0.998) TCGA-BA-4076-01 1 145273312 145273312 G C NOTCH2NL Missense_Mutation p.G56R 0.11 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 1 152538262 152538262 G T LCE3E 3'UTR 0.29 TCGA-BA-4076-01 1 152883976 152883976 C A IVL Missense_Mutation p.P568H 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-BA-4076-01 1 15788127 15788127 G T CELA2A Missense_Mutation p.W67C 0.32 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 1 159557641 159557641 G A APCS 5'UTR 0.48 TCGA-BA-4076-01 1 160249948 160249948 A G PEX19 Missense_Mutation p.I228T 0.40 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 1 165218667 165218667 C T LMX1A Silent p.V158V 0.22 TCGA-BA-4076-01 1 169510646 169510646 G A F5 Nonsense_Mutation p.Q1228* 0.42 TCGA-BA-4076-01 1 169672410 169672410 C G SELL Missense_Mutation p.S326T 0.34 tolerated(0.46) benign(0.013) TCGA-BA-4076-01 1 173579330 173579330 A G ANKRD45 Missense_Mutation p.V252A 0.31 deleterious_low_confidence(0.02) benign(0.054) TCGA-BA-4076-01 1 179533895 179533895 C A NPHS2 Missense_Mutation p.W103L 0.34 tolerated(0.07) probably_damaging(0.987) TCGA-BA-4076-01 1 192321323 192321323 G T RGS21 Nonsense_Mutation p.E79* 0.30 TCGA-BA-4076-01 1 196965026 196965026 G A CFHR5 Missense_Mutation p.V263I 0.42 tolerated(0.97) benign(0.175) TCGA-BA-4076-01 1 207235301 207235301 G T PFKFB2 Missense_Mutation p.W30L 0.35 probably_damaging(0.999) TCGA-BA-4076-01 1 211923159 211923159 T A LPGAT1 3'UTR 0.45 TCGA-BA-4076-01 1 215931940 215931940 G C USH2A Missense_Mutation p.P3796A 0.39 probably_damaging(0.973) TCGA-BA-4076-01 1 216373451 216373451 A G USH2A Missense_Mutation p.F1110S 0.39 possibly_damaging(0.756) TCGA-BA-4076-01 1 22168731 22168731 C A HSPG2 Splice_Site p.X3018_splice 0.34 TCGA-BA-4076-01 1 226127684 226127684 A T LEFTY2 Missense_Mutation p.L90Q 0.34 deleterious(0.01) probably_damaging(0.965) TCGA-BA-4076-01 1 230472906 230472906 G T PGBD5 Missense_Mutation p.F272L 0.40 deleterious(0.03) probably_damaging(0.995) TCGA-BA-4076-01 1 235600733 235600733 G T TBCE Missense_Mutation p.A354S 0.44 tolerated(0.06) benign(0.002) TCGA-BA-4076-01 1 237947941 237947941 G A RYR2 Missense_Mutation p.C4310Y 0.36 benign(0) TCGA-BA-4076-01 1 242451748 242451748 C A PLD5 Missense_Mutation p.M137I 0.36 tolerated(0.26) benign(0.177) TCGA-BA-4076-01 1 247655010 247655010 T C OR2W5 RNA 0.42 TCGA-BA-4076-01 1 248436753 248436753 C T OR2T33 Missense_Mutation p.A122T 0.22 deleterious(0.01) benign(0.04) TCGA-BA-4076-01 1 248436759 248436759 G T OR2T33 Missense_Mutation p.R120S 0.23 deleterious(0) probably_damaging(0.932) TCGA-BA-4076-01 1 248487331 248487331 G T OR2M7 Missense_Mutation p.D180E 0.33 tolerated(1) benign(0.045) TCGA-BA-4076-01 1 248551581 248551581 A T OR2T6 Silent p.T224T 0.54 TCGA-BA-4076-01 1 32672224 32672224 A C IQCC Missense_Mutation p.M181L 0.43 tolerated(0.16) possibly_damaging(0.658) TCGA-BA-4076-01 1 34180272 34180272 G A CSMD2 Silent p.P1067P 0.43 TCGA-BA-4076-01 1 3512006 3512006 A T MEGF6 Missense_Mutation p.V91D 0.33 tolerated(0.05) benign(0.24) TCGA-BA-4076-01 1 43774729 43774729 G C TIE1 Missense_Mutation p.C372S 0.33 deleterious(0) probably_damaging(0.997) TCGA-BA-4076-01 1 45407189 45407189 T G EIF2B3 Missense_Mutation p.K148T 0.41 deleterious(0) benign(0.081) TCGA-BA-4076-01 1 52705124 52705124 G T ZFYVE9 Nonsense_Mutation p.G679* 0.38 TCGA-BA-4076-01 1 57258099 57258099 T C C1orf168 Silent p.K129K 0.39 TCGA-BA-4076-01 1 70505051 70505051 G T LRRC7 Missense_Mutation p.G1144C 0.39 tolerated(0.18) probably_damaging(0.948) TCGA-BA-4076-01 1 74507186 74507186 C A LRRIQ3 Nonsense_Mutation p.E477* 0.39 TCGA-BA-4076-01 1 75078365 75078365 C A C1orf173 Nonsense_Mutation p.G377* 0.33 TCGA-BA-4076-01 1 76211507 76211507 C T ACADM Missense_Mutation p.R210C 0.35 deleterious(0) probably_damaging(0.946) TCGA-BA-4076-01 1 76365379 76365379 G T MSH4 Silent p.T869T 0.46 TCGA-BA-4076-01 1 76877870 76877870 A T ST6GALNAC3 Missense_Mutation p.T131S 0.48 probably_damaging(0.999) TCGA-BA-4076-01 1 97658799 97658799 G A DPYD Silent p.C816C 0.35 TCGA-BA-4076-01 20 19566110 19566110 G - SLC24A3 Frame_Shift_Del p.G179Efs*36 0.15 TCGA-BA-4076-01 20 33867551 33867551 C T EIF6 Splice_Site p.X183_splice 0.39 TCGA-BA-4076-01 20 44441845 44441845 G T UBE2C Intron 0.45 TCGA-BA-4076-01 20 60776139 60776139 C T MTG2 3'UTR 0.43 TCGA-BA-4076-01 20 62493607 62493607 C G ABHD16B Silent p.P238P 0.38 TCGA-BA-4076-01 21 11047562 11047562 A G BAGE2 RNA 0.05 TCGA-BA-4076-01 21 32007617 32007617 G A KRTAP20-2 Missense_Mutation p.R12H 0.40 unknown(0) TCGA-BA-4076-01 21 34011284 34011284 T A SYNJ1 Silent p.P1322P 0.37 TCGA-BA-4076-01 21 46086539 46086539 T C KRTAP12-2 Missense_Mutation p.S89G 0.39 tolerated(0.1) benign(0.418) TCGA-BA-4076-01 21 47548894 47548894 T C COL6A2 Intron 0.33 TCGA-BA-4076-01 21 47821491 47821491 G A PCNT Silent p.Q1606Q 0.35 TCGA-BA-4076-01 21 47910617 47910617 G A DIP2A Missense_Mutation p.E90K 0.40 tolerated(0.12) benign(0.424) TCGA-BA-4076-01 22 19431847 19431847 G C C22orf39 Missense_Mutation p.P124A 0.36 tolerated(0.31) benign(0.167) TCGA-BA-4076-01 22 23165320 23165320 C T IGLV2-8 Silent p.A2A 0.19 TCGA-BA-4076-01 22 26423401 26423401 G C MYO18B Silent p.G2487G 0.36 TCGA-BA-4076-01 22 35804507 35804507 G T MCM5 Missense_Mutation p.A235S 0.45 tolerated(0.8) benign(0.005) TCGA-BA-4076-01 22 37603211 37603211 G A SSTR3 Missense_Mutation p.A211V 0.39 tolerated(0.22) benign(0.047) TCGA-BA-4076-01 22 38119740 38119740 C G TRIOBP Missense_Mutation p.P393A 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-BA-4076-01 22 41347432 41347432 G T RBX1 Silent p.P10P 0.35 TCGA-BA-4076-01 22 41574850 41574850 A C EP300 Missense_Mutation p.N2379H 0.45 possibly_damaging(0.795) TCGA-BA-4076-01 2 114492205 114492205 C A SLC35F5 Missense_Mutation p.G293V 0.54 deleterious(0.01) possibly_damaging(0.735) TCGA-BA-4076-01 2 116510867 116510867 T C DPP10 Silent p.C360C 0.30 TCGA-BA-4076-01 2 11802111 11802111 G A NTSR2 Missense_Mutation p.R294C 0.41 deleterious(0) possibly_damaging(0.816) TCGA-BA-4076-01 2 124783182 124783182 C G CNTNAP5 5'UTR 0.49 TCGA-BA-4076-01 2 125192236 125192236 G T CNTNAP5 Missense_Mutation p.K235N 0.31 tolerated(0.12) benign(0.011) TCGA-BA-4076-01 2 125284872 125284872 C A CNTNAP5 Missense_Mutation p.D495E 0.21 tolerated(0.49) benign(0.068) TCGA-BA-4076-01 2 127950815 127950815 G T CYP27C1 Missense_Mutation p.A286D 0.50 deleterious(0) possibly_damaging(0.805) TCGA-BA-4076-01 2 136564931 136564931 C T LCT Missense_Mutation p.V1314I 0.68 tolerated(0.5) benign(0.002) TCGA-BA-4076-01 2 141777503 141777503 T C LRP1B Missense_Mutation p.D653G 0.74 possibly_damaging(0.822) TCGA-BA-4076-01 2 163133239 163133239 C G IFIH1 Silent p.L754L 0.70 TCGA-BA-4076-01 2 164467857 164467857 C A FIGN Missense_Mutation p.S162I 0.67 tolerated(1) probably_damaging(0.979) TCGA-BA-4076-01 2 165381587 165381587 T C GRB14 Missense_Mutation p.Y202C 0.71 deleterious(0.02) possibly_damaging(0.497) TCGA-BA-4076-01 2 166854615 166854615 C A SCN1A Missense_Mutation p.G1470V 0.77 deleterious(0) probably_damaging(0.995) TCGA-BA-4076-01 2 179454011 179454011 C A TTN Missense_Mutation p.R20814I 0.30 TCGA-BA-4076-01 2 179537203 179537203 C A TTN Nonsense_Mutation p.E11621* 0.23 TCGA-BA-4076-01 2 179553841 179553841 G C TTN Silent p.P10678P 0.55 TCGA-BA-4076-01 2 179583701 179583701 C G TTN Splice_Site p.X8076_splice 0.56 TCGA-BA-4076-01 2 179590292 179590292 G T TTN Missense_Mutation p.A6880D 0.56 TCGA-BA-4076-01 2 179659844 179659844 G T TTN Nonsense_Mutation p.Y350* 0.32 TCGA-BA-4076-01 2 196723252 196723252 A T DNAH7 Silent p.G2671G 0.60 TCGA-BA-4076-01 2 215917308 215917308 G A ABCA12 Missense_Mutation p.A137V 0.72 tolerated(0.28) benign(0.001) TCGA-BA-4076-01 2 228883596 228883596 G - SPHKAP Frame_Shift_Del p.S659Qfs*18 0.42 TCGA-BA-4076-01 2 230652326 230652326 T C TRIP12 Silent p.A1555A 0.73 TCGA-BA-4076-01 2 27169818 27169818 T C DPYSL5 Silent p.A550A 0.24 TCGA-BA-4076-01 2 27169819 27169819 C A DPYSL5 Silent p.R551R 0.25 TCGA-BA-4076-01 2 27715248 27715248 C A FNDC4 3'UTR 0.34 TCGA-BA-4076-01 2 31167748 31167748 C A GALNT14 Missense_Mutation p.R273L 0.40 deleterious(0) possibly_damaging(0.806) TCGA-BA-4076-01 2 61644439 61644439 G C USP34 Intron 0.34 TCGA-BA-4076-01 2 62081004 62081004 G T FAM161A Missense_Mutation p.A58D 0.39 tolerated(0.19) possibly_damaging(0.687) TCGA-BA-4076-01 2 72361927 72361927 T A CYP26B1 Missense_Mutation p.K275M 0.31 tolerated(0.05) probably_damaging(0.933) TCGA-BA-4076-01 2 74753875 74753875 C T AUP1 3'UTR 0.37 TCGA-BA-4076-01 2 74763560 74763560 C A LOXL3 Missense_Mutation p.E317D 0.42 deleterious(0) probably_damaging(0.992) TCGA-BA-4076-01 2 77745800 77745800 A G LRRTM4 Missense_Mutation p.F399L 0.34 tolerated(0.65) benign(0) TCGA-BA-4076-01 2 80530391 80530391 C A LRRTM1 Missense_Mutation p.R185L 0.44 deleterious(0) probably_damaging(0.995) TCGA-BA-4076-01 2 80530685 80530685 C A LRRTM1 Missense_Mutation p.G87V 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-BA-4076-01 2 88082207 88082207 C A RGPD2 Missense_Mutation p.A1446S 0.28 deleterious(0.01) possibly_damaging(0.727) TCGA-BA-4076-01 2 89976446 89976446 A T IGKV2D-30 Missense_Mutation p.E106V 0.39 deleterious(0) probably_damaging(0.928) TCGA-BA-4076-01 2 99410925 99410925 A T KIAA1211L 3'UTR 0.29 TCGA-BA-4076-01 3 100349575 100349576 - TT GPR128 Frame_Shift_Ins p.M86Ifs*45 0.18 TCGA-BA-4076-01 3 100962535 100962535 C A IMPG2 Silent p.V880V 0.59 TCGA-BA-4076-01 3 10428194 10428194 C A ATP2B2 Missense_Mutation p.V304L 0.69 tolerated(0.3) benign(0) TCGA-BA-4076-01 3 108189618 108189618 C T MYH15 Missense_Mutation p.R457K 0.34 tolerated(0.43) possibly_damaging(0.519) TCGA-BA-4076-01 3 108572466 108572466 G - TRAT1 Splice_Site p.X102_splice 0.18 TCGA-BA-4076-01 3 108813861 108813861 C A MORC1 Missense_Mutation p.D160Y 0.21 deleterious(0) probably_damaging(0.994) TCGA-BA-4076-01 3 120489717 120489717 G T GTF2E1 Silent p.V197V 0.25 TCGA-BA-4076-01 3 129130039 129130039 C T EFCAB12 Missense_Mutation p.V333M 0.21 deleterious(0) probably_damaging(0.919) TCGA-BA-4076-01 3 132408077 132408077 C T NPHP3 Nonsense_Mutation p.W908* 0.30 TCGA-BA-4076-01 3 138763109 138763109 C T PRR23C Nonsense_Mutation p.W118* 0.17 TCGA-BA-4076-01 3 148778569 148778569 T G HLTF Missense_Mutation p.K413Q 0.35 deleterious(0.04) benign(0.084) TCGA-BA-4076-01 3 148792018 148792018 C A HLTF Missense_Mutation p.L171F 0.17 deleterious(0) possibly_damaging(0.554) TCGA-BA-4076-01 3 154138918 154138918 T C GPR149 Silent p.P511P 0.32 TCGA-BA-4076-01 3 158983064 158983064 G A IQCJ Missense_Mutation p.G118R 0.58 tolerated_low_confidence(0.4) benign(0.265) TCGA-BA-4076-01 3 164737396 164737396 G T SI Silent p.P1139P 0.51 TCGA-BA-4076-01 3 164739083 164739083 T C SI Missense_Mutation p.Y1063C 0.30 deleterious(0) probably_damaging(0.998) TCGA-BA-4076-01 3 169866864 169866864 C T PHC3 Intron 0.35 TCGA-BA-4076-01 3 170244765 170244765 A T SLC7A14 5'UTR 0.26 TCGA-BA-4076-01 3 179095131 179095131 G A MFN1 Splice_Site p.X409_splice 0.30 TCGA-BA-4076-01 3 184099067 184099067 C G CHRD Missense_Mutation p.C99W 0.31 deleterious(0) probably_damaging(0.978) TCGA-BA-4076-01 3 186299209 186299209 G T DNAJB11 Missense_Mutation p.C169F 0.26 deleterious(0) possibly_damaging(0.565) TCGA-BA-4076-01 3 46062615 46062615 G A XCR1 Silent p.L275L 0.74 TCGA-BA-4076-01 3 49227304 49227304 G T C3orf84 Intron 0.76 TCGA-BA-4076-01 3 69168975 69168975 T C LMOD3 Silent p.A177A 0.64 TCGA-BA-4076-01 3 7494344 7494344 C A GRM7 Missense_Mutation p.Q409K 0.60 deleterious(0.02) probably_damaging(0.987) TCGA-BA-4076-01 3 7494377 7494377 C G GRM7 Missense_Mutation p.H420D 0.59 deleterious(0) probably_damaging(0.996) TCGA-BA-4076-01 3 85851229 85851229 G T CADM2 Missense_Mutation p.V34L 0.85 tolerated(0.37) benign(0.001) TCGA-BA-4076-01 3 93615489 93615489 A T PROS1 Nonsense_Mutation p.L299* 0.25 TCGA-BA-4076-01 3 97467576 97467576 C T EPHA6 3'UTR 0.25 TCGA-BA-4076-01 3 98507004 98507004 C G ST3GAL6 Missense_Mutation p.L186V 0.29 deleterious(0) possibly_damaging(0.609) TCGA-BA-4076-01 4 107845325 107845325 C A DKK2 Missense_Mutation p.C189F 0.40 deleterious(0) probably_damaging(0.986) TCGA-BA-4076-01 4 107845853 107845853 G A DKK2 Silent p.I126I 0.43 TCGA-BA-4076-01 4 110610524 110610524 G C CASP6 Missense_Mutation p.L282V 0.43 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 4 111431455 111431455 G T ENPEP Nonsense_Mutation p.G417* 0.40 TCGA-BA-4076-01 4 114277866 114277866 A T ANK2 Missense_Mutation p.S2698C 0.40 probably_damaging(0.959) TCGA-BA-4076-01 4 120221511 120221511 G C C4orf3 Silent p.L193L 0.54 TCGA-BA-4076-01 4 134076163 134076163 C A PCDH10 Missense_Mutation p.R928S 0.39 tolerated(0.16) probably_damaging(0.994) TCGA-BA-4076-01 4 155241774 155241774 C A DCHS2 Missense_Mutation p.A1138S 0.41 deleterious(0.03) probably_damaging(0.989) TCGA-BA-4076-01 4 164272139 164272139 A G NPY5R Missense_Mutation p.I238M 0.38 tolerated(0.08) possibly_damaging(0.636) TCGA-BA-4076-01 4 172735864 172735864 C G GALNTL6 Missense_Mutation p.Q45E 0.26 tolerated(1) benign(0) TCGA-BA-4076-01 4 173150916 173150916 G T GALNTL6 Splice_Site p.X83_splice 0.47 TCGA-BA-4076-01 4 44688653 44688653 A G GUF1 Silent p.V287V 0.70 TCGA-BA-4076-01 4 57173804 57173804 T A KIAA1211 Missense_Mutation p.L75Q 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-BA-4076-01 4 65175550 65175550 C G TECRL Missense_Mutation p.L217F 0.37 deleterious(0.01) probably_damaging(0.909) TCGA-BA-4076-01 4 69682013 69682013 G T UGT2B10 Missense_Mutation p.L92F 0.40 tolerated(0.68) benign(0.008) TCGA-BA-4076-01 4 70804897 70804897 A G CSN1S1 Missense_Mutation p.M83V 0.41 tolerated(0.58) benign(0) TCGA-BA-4076-01 4 73164099 73164099 C G ADAMTS3 Missense_Mutation p.D829H 0.41 deleterious(0.02) possibly_damaging(0.86) TCGA-BA-4076-01 4 74285323 74285323 G T ALB Missense_Mutation p.K584N 0.33 deleterious(0.04) benign(0.339) TCGA-BA-4076-01 4 74285324 74285324 G T ALB Missense_Mutation p.A585S 0.33 tolerated(0.14) benign(0.109) TCGA-BA-4076-01 4 80246866 80246866 C T NAA11 Missense_Mutation p.V56I 0.32 tolerated(0.1) possibly_damaging(0.533) TCGA-BA-4076-01 4 80898813 80898813 C T ANTXR2 Missense_Mutation p.D464N 0.47 tolerated(0.05) probably_damaging(0.914) TCGA-BA-4076-01 4 90170272 90170272 G T GPRIN3 Missense_Mutation p.S330R 0.34 deleterious(0) probably_damaging(0.999) TCGA-BA-4076-01 5 13735961 13735961 G A DNAH5 Nonsense_Mutation p.Q3846* 0.27 TCGA-BA-4076-01 5 140209242 140209242 G T PCDHA6 Silent p.P522P 0.81 TCGA-BA-4076-01 5 140262387 140262387 C G PCDHA13 Missense_Mutation p.F178L 0.84 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-BA-4076-01 5 140531709 140531709 C A PCDHB6 Missense_Mutation p.T624N 0.80 deleterious(0) probably_damaging(0.994) TCGA-BA-4076-01 5 161524815 161524815 A T GABRG2 Missense_Mutation p.N167Y 0.89 deleterious(0) probably_damaging(0.956) TCGA-BA-4076-01 5 24537586 24537586 C T CDH10 Silent p.E143E 0.43 TCGA-BA-4076-01 5 26885967 26885967 T C CDH9 Silent p.T546T 0.38 TCGA-BA-4076-01 5 39153579 39153579 G C FYB Silent p.P431P 0.39 TCGA-BA-4076-01 5 41048516 41048516 C G MROH2B Missense_Mutation p.G532R 0.42 tolerated(1) benign(0.047) TCGA-BA-4076-01 5 41201815 41201815 G C C6 Missense_Mutation p.Q49E 0.38 tolerated(0.22) benign(0.186) TCGA-BA-4076-01 5 45396681 45396681 G T HCN1 Silent p.V381V 0.40 TCGA-BA-4076-01 5 58147124 58147124 G A RAB3C Silent p.Q210Q 0.80 TCGA-BA-4076-01 6 116381174 116381174 G A FRK Missense_Mutation p.P101S 0.68 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 6 132004203 132004203 G T ENPP3 Missense_Mutation p.A341S 0.67 tolerated(0.09) possibly_damaging(0.789) TCGA-BA-4076-01 6 137015389 137015389 C T MAP3K5 Missense_Mutation p.S381N 0.18 tolerated(0.18) benign(0.032) TCGA-BA-4076-01 6 138550985 138550985 C A KIAA1244 Missense_Mutation p.A139E 0.86 deleterious(0.04) benign(0.307) TCGA-BA-4076-01 6 149997417 149997417 T A LATS1 Silent p.T954T 0.38 TCGA-BA-4076-01 6 152464762 152464762 C T SYNE1 Missense_Mutation p.G8372D 0.37 possibly_damaging(0.792) TCGA-BA-4076-01 6 153043007 153043007 C G MYCT1 Missense_Mutation p.S109R 0.44 tolerated(0.29) possibly_damaging(0.603) TCGA-BA-4076-01 6 165746457 165746457 G A PDE10A 3'UTR 0.37 TCGA-BA-4076-01 6 168464322 168464322 G T FRMD1 Silent p.R255R 0.31 TCGA-BA-4076-01 6 29274690 29274690 C A OR14J1 Missense_Mutation p.T75K 0.78 deleterious(0) probably_damaging(0.999) TCGA-BA-4076-01 6 46191030 46191030 A G RCAN2 Missense_Mutation p.Y194H 0.41 tolerated(0.43) possibly_damaging(0.667) TCGA-BA-4076-01 6 46856179 46856179 G T GPR116 Missense_Mutation p.A74E 0.38 deleterious(0.01) possibly_damaging(0.544) TCGA-BA-4076-01 6 50740375 50740375 T A TFAP2D Missense_Mutation p.F386Y 0.44 deleterious(0) probably_damaging(0.987) TCGA-BA-4076-01 6 51897833 51897833 A G PKHD1 Missense_Mutation p.I1120T 0.40 tolerated(0.18) benign(0.034) TCGA-BA-4076-01 6 51947243 51947243 G A PKHD1 Silent p.P76P 0.40 TCGA-BA-4076-01 6 57017082 57017082 G T ZNF451 Missense_Mutation p.G939V 0.35 deleterious(0) probably_damaging(1) TCGA-BA-4076-01 6 57472415 57472415 A T PRIM2 3'UTR 0.10 TCGA-BA-4076-01 6 66205107 66205107 A T EYS Missense_Mutation p.I66K 0.38 deleterious_low_confidence(0.05) benign(0.024) TCGA-BA-4076-01 6 72113323 72113323 G C MIR30A RNA 0.60 TCGA-BA-4076-01 6 88049995 88049995 G T SMIM8 3'UTR 0.70 TCGA-BA-4076-01 6 97052714 97052714 C G FHL5 Missense_Mutation p.A83G 0.62 deleterious(0.05) probably_damaging(0.969) TCGA-BA-4076-01 7 107669526 107669526 A G LAMB4 Missense_Mutation p.L1703S 0.70 deleterious(0) probably_damaging(0.992) TCGA-BA-4076-01 7 128478683 128478683 G C FLNC Missense_Mutation p.V413L 0.67 tolerated(0.26) benign(0.363) TCGA-BA-4076-01 7 129045020 129045020 A T AHCYL2 Missense_Mutation p.N370Y 0.69 deleterious(0) probably_damaging(0.988) TCGA-BA-4076-01 7 143633045 143633045 G T OR2F2 Silent p.T240T 0.61 TCGA-BA-4076-01 7 146741062 146741062 G A CNTNAP2 Missense_Mutation p.A156T 0.62 tolerated(0.15) benign(0.437) TCGA-BA-4076-01 7 1539130 1539130 C T INTS1 Missense_Mutation p.V275I 0.18 tolerated(0.2) benign(0.001) TCGA-BA-4076-01 7 20198179 20198179 A G MACC1 Missense_Mutation p.L602P 0.90 deleterious(0.01) probably_damaging(0.984) TCGA-BA-4076-01 7 23163426 23163426 C G KLHL7 Missense_Mutation p.Q51E 0.90 tolerated(0.85) benign(0.002) TCGA-BA-4076-01 7 37355565 37355565 C T ELMO1 Splice_Site p.X27_splice 0.87 TCGA-BA-4076-01 7 37960496 37960496 C A EPDR1 5'UTR 0.91 TCGA-BA-4076-01 7 92902042 92902042 A G CCDC132 Silent p.T266T 0.31 TCGA-BA-4076-01 7 94740679 94740679 C A PPP1R9A Missense_Mutation p.L502I 0.33 deleterious(0.01) possibly_damaging(0.625) TCGA-BA-4076-01 7 99171360 99171360 G C ZNF655 3'UTR 0.50 TCGA-BA-4076-01 8 100146859 100146859 G T VPS13B Splice_Site p.X403_splice 0.32 TCGA-BA-4076-01 8 101936241 101936241 C A YWHAZ Missense_Mutation p.S207I 0.44 deleterious_low_confidence(0) benign(0.406) TCGA-BA-4076-01 8 110346585 110346585 G C ENY2 5'UTR 0.37 TCGA-BA-4076-01 8 110468491 110468491 G C PKHD1L1 Missense_Mutation p.G2292A 0.22 deleterious(0) probably_damaging(0.996) TCGA-BA-4076-01 8 110509268 110509268 C A PKHD1L1 Missense_Mutation p.T3483K 0.28 tolerated(1) benign(0.001) TCGA-BA-4076-01 8 128753024 128753024 G T MYC Missense_Mutation p.Q395H 0.23 tolerated(0.87) probably_damaging(0.997) TCGA-BA-4076-01 8 143558514 143558514 G A BAI1 Missense_Mutation p.C366Y 0.29 deleterious(0) possibly_damaging(0.712) TCGA-BA-4076-01 8 2832134 2832134 C T CSMD1 Missense_Mutation p.G2860E 0.22 probably_damaging(0.998) TCGA-BA-4076-01 8 54163409 54163409 C G OPRK1 Silent p.T63T 0.74 TCGA-BA-4076-01 8 75227756 75227756 C G JPH1 Missense_Mutation p.R160P 0.72 deleterious(0) probably_damaging(0.995) TCGA-BA-4076-01 8 77775753 77775753 C G ZFHX4 Missense_Mutation p.P3268R 0.68 probably_damaging(0.997) TCGA-BA-4076-01 9 104319794 104319794 G A RNF20 Silent p.E766E 0.86 TCGA-BA-4076-01 9 108136948 108136948 C G SLC44A1 Missense_Mutation p.L522V 0.42 deleterious(0.01) possibly_damaging(0.823) TCGA-BA-4076-01 9 115983487 115983487 G A FKBP15 Missense_Mutation p.L13F 0.85 deleterious(0.01) possibly_damaging(0.494) TCGA-BA-4076-01 9 125273992 125273992 C A OR1J2 Silent p.L304L 0.80 TCGA-BA-4076-01 9 135464656 135464656 T A BARHL1 Missense_Mutation p.L244Q 0.87 deleterious(0) probably_damaging(0.98) TCGA-BA-4076-01 9 136505046 136505046 C A DBH Missense_Mutation p.P140T 0.75 tolerated(0.36) benign(0.099) TCGA-BA-4076-01 9 139412204 139412204 C A NOTCH1 Missense_Mutation p.G481C 0.79 deleterious(0) probably_damaging(0.977) TCGA-BA-4076-01 9 71395259 71395259 G T FAM122A Missense_Mutation p.R60L 0.87 deleterious(0) probably_damaging(0.962) TCGA-BA-4076-01 X 101970808 101970808 G A GPRASP2 Silent p.Q337Q 0.78 TCGA-BA-4076-01 X 107930715 107930715 C T COL4A5 Missense_Mutation p.T1440I 0.79 possibly_damaging(0.611) TCGA-BA-4076-01 X 12736646 12736646 C T FRMPD4 Missense_Mutation p.P1234L 0.78 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BA-4076-01 X 134856789 134856789 G T CT45A1 Missense_Mutation p.M188I 0.08 tolerated(1) possibly_damaging(0.888) TCGA-BA-4076-01 X 134856819 134856819 T C CT45A1 3'UTR 0.08 TCGA-BA-4076-01 X 135741549 135741549 C A CD40LG Missense_Mutation p.T254K 0.82 deleterious(0) probably_damaging(0.998) TCGA-BA-4076-01 X 140993927 140993927 T A MAGEC1 Missense_Mutation p.L246Q 0.76 tolerated_low_confidence(0.07) unknown(0) TCGA-BA-4076-01 X 146360774 146360774 C A MIR514A1 RNA 0.67 TCGA-BA-4076-01 X 1748783 1748783 G A ASMT Silent p.V171V 0.41 TCGA-BA-4076-01 X 18338540 18338540 C G SCML2 Missense_Mutation p.G133A 0.82 deleterious(0.01) probably_damaging(1) TCGA-BA-4076-01 X 34962248 34962248 C A FAM47B Missense_Mutation p.H434N 0.75 deleterious(0.05) benign(0.29) TCGA-BA-4076-01 X 50121610 50121610 C T DGKK RNA 0.64 TCGA-BA-4076-01 X 50127734 50127734 C G DGKK RNA 0.81 TCGA-BA-4076-01 X 77294477 77294477 G T ATP7A Missense_Mutation p.D1219Y 0.77 deleterious(0) probably_damaging(0.997) TCGA-BA-4077-01 10 105006203 105006203 G A RPEL1 Silent p.Q150Q 0.11 TCGA-BA-4077-01 10 17730107 17730107 C G STAM Missense_Mutation p.L127V 0.04 deleterious(0) probably_damaging(0.977) TCGA-BA-4077-01 10 27700799 27700799 C T PTCHD3 Silent p.V383V 0.14 TCGA-BA-4077-01 10 5227116 5227116 G C AKR1CL1 5'Flank 0.16 TCGA-BA-4077-01 10 5435546 5435546 G C TUBAL3 Missense_Mutation p.F425L 0.11 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BA-4077-01 10 5437411 5437411 G A TUBAL3 Missense_Mutation p.S92L 0.12 deleterious_low_confidence(0.01) benign(0.129) TCGA-BA-4077-01 10 70748834 70748834 G C KIAA1279 Missense_Mutation p.E82D 0.06 tolerated_low_confidence(0.6) benign(0) TCGA-BA-4077-01 10 70775627 70775627 G T KIAA1279 Nonsense_Mutation p.E441* 0.34 TCGA-BA-4077-01 10 75529650 75529650 G T SEC24C Missense_Mutation p.K913N 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-BA-4077-01 10 79753020 79753020 C G POLR3A Missense_Mutation p.D908H 0.08 deleterious(0) probably_damaging(0.998) TCGA-BA-4077-01 10 85982250 85982250 G C LRIT2 Missense_Mutation p.S360W 0.04 deleterious(0.02) probably_damaging(0.911) TCGA-BA-4077-01 10 88260338 88260338 G A WAPAL Missense_Mutation p.S221L 0.10 deleterious_low_confidence(0.02) benign(0.004) TCGA-BA-4077-01 10 92655643 92655643 G C RPP30 Missense_Mutation p.E196Q 0.11 tolerated(0.05) possibly_damaging(0.875) TCGA-BA-4077-01 11 119103214 119103214 C T CBL Silent p.I84I 0.09 TCGA-BA-4077-01 11 120998984 120998984 G A TECTA Silent p.L766L 0.24 TCGA-BA-4077-01 11 19077743 19077743 G T MRGPRX2 Silent p.L69L 0.09 TCGA-BA-4077-01 11 22646150 22646150 G A FANCF 3'UTR 0.23 TCGA-BA-4077-01 11 2434782 2434782 C T TRPM5 Missense_Mutation p.A643T 0.16 tolerated(0.79) benign(0.002) TCGA-BA-4077-01 11 32675537 32675537 T G CCDC73 Missense_Mutation p.Q274P 0.32 deleterious(0) possibly_damaging(0.898) TCGA-BA-4077-01 11 43419614 43419614 G A TTC17 Missense_Mutation p.A337T 0.29 deleterious(0.05) probably_damaging(0.945) TCGA-BA-4077-01 11 4904108 4904108 G A OR51T1 Missense_Mutation p.D354N 0.13 tolerated_low_confidence(0.26) benign(0.004) TCGA-BA-4077-01 11 5020494 5020494 C T OR51L1 Silent p.I94I 0.34 TCGA-BA-4077-01 11 607897 607897 C T PHRF1 Missense_Mutation p.S813L 0.05 tolerated(0.06) benign(0.091) TCGA-BA-4077-01 11 62286923 62286923 G C AHNAK Missense_Mutation p.A4989G 0.05 probably_damaging(0.968) TCGA-BA-4077-01 11 62656097 62656097 C G SLC3A2 Missense_Mutation p.L610V 0.35 tolerated(0.71) benign(0.04) TCGA-BA-4077-01 11 687928 687928 T A DEAF1 Missense_Mutation p.K216M 0.17 deleterious(0.01) probably_damaging(1) TCGA-BA-4077-01 11 70170534 70170534 C T PPFIA1 Silent p.L97L 0.05 TCGA-BA-4077-01 11 72945166 72945166 C - P2RY2 5'UTR 0.25 TCGA-BA-4077-01 11 85979511 85979511 C T EED Nonsense_Mutation p.Q292* 0.49 TCGA-BA-4077-01 11 88300894 88300894 G C GRM5 Missense_Mutation p.L653V 0.56 deleterious(0.04) probably_damaging(0.999) TCGA-BA-4077-01 11 9009738 9009744 TTCGTCT - NRIP3 Frame_Shift_Del p.K87Tfs*11 0.32 TCGA-BA-4077-01 11 9735026 9735026 T C SWAP70 Missense_Mutation p.F85S 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-BA-4077-01 12 102492898 102492898 G A NUP37 Silent p.D145D 0.35 TCGA-BA-4077-01 12 107393468 107393468 C T CRY1 Missense_Mutation p.G333D 0.37 deleterious(0) probably_damaging(0.994) TCGA-BA-4077-01 12 111078307 111078307 G C TCTN1 Silent p.V321V 0.15 TCGA-BA-4077-01 12 111345227 111345227 A G CCDC63 Missense_Mutation p.S547G 0.12 tolerated_low_confidence(0.24) benign(0.009) TCGA-BA-4077-01 12 118582689 118582689 C G PEBP1 3'UTR 0.19 TCGA-BA-4077-01 12 120530923 120530923 C T CCDC64 Silent p.I560I 0.10 TCGA-BA-4077-01 12 12312019 12312019 G C LRP6 Missense_Mutation p.I845M 0.27 deleterious(0) probably_damaging(0.986) TCGA-BA-4077-01 12 123950297 123950297 C G SNRNP35 Silent p.V75V 0.35 TCGA-BA-4077-01 12 126135268 126135268 G C TMEM132B Missense_Mutation p.K556N 0.04 deleterious(0) possibly_damaging(0.705) TCGA-BA-4077-01 12 129566558 129566558 C G TMEM132D Missense_Mutation p.E557Q 0.16 deleterious(0.02) possibly_damaging(0.733) TCGA-BA-4077-01 12 133306305 133306305 C G ANKLE2 Missense_Mutation p.E815Q 0.06 tolerated(0.55) benign(0.122) TCGA-BA-4077-01 12 14649234 14649234 G A ATF7IP Missense_Mutation p.G1117E 0.32 deleterious_low_confidence(0) unknown(0) TCGA-BA-4077-01 12 20806970 20806970 C G PDE3A Missense_Mutation p.I1005M 0.12 deleterious(0) probably_damaging(0.959) TCGA-BA-4077-01 12 351877 351877 G C SLC6A13 Silent p.V127V 0.27 TCGA-BA-4077-01 12 49075374 49075374 C A KANSL2 Silent p.G14G 0.13 TCGA-BA-4077-01 12 49219528 49219528 C T CACNB3 Missense_Mutation p.R240C 0.21 deleterious(0) probably_damaging(0.973) TCGA-BA-4077-01 12 49443980 49443980 G C KMT2D Missense_Mutation p.P1131A 0.41 benign(0.008) TCGA-BA-4077-01 12 51504737 51504739 GAT - TFCP2 In_Frame_Del p.D162_P163delinsA 0.32 TCGA-BA-4077-01 12 53687204 53687204 G C ESPL1 Missense_Mutation p.K2103N 0.16 deleterious(0) probably_damaging(0.993) TCGA-BA-4077-01 12 56620162 56620162 C T NABP2 Missense_Mutation p.S132L 0.16 tolerated(0.16) benign(0.002) TCGA-BA-4077-01 12 56865620 56865620 C T GLS2 Missense_Mutation p.G530E 0.31 deleterious(0) probably_damaging(0.98) TCGA-BA-4077-01 12 57485044 57485044 G C NAB2 Missense_Mutation p.E74Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-BA-4077-01 12 63974572 63974572 G C DPY19L2 Missense_Mutation p.I590M 0.25 deleterious(0) benign(0.314) TCGA-BA-4077-01 12 70004349 70004349 C A LRRC10 Silent p.L90L 0.29 TCGA-BA-4077-01 12 7556331 7556331 G A CD163L1 Missense_Mutation p.A403V 0.38 tolerated(0.6) benign(0.177) TCGA-BA-4077-01 12 8196363 8196363 G A FOXJ2 Missense_Mutation p.D159N 0.07 tolerated(0.1) possibly_damaging(0.579) TCGA-BA-4077-01 12 89745576 89745576 C T DUSP6 Missense_Mutation p.E81K 0.19 tolerated(0.35) benign(0.233) TCGA-BA-4077-01 12 9161668 9161668 C T KLRG1 Missense_Mutation p.S152L 0.42 deleterious(0.04) possibly_damaging(0.747) TCGA-BA-4077-01 13 101756771 101756771 C T NALCN Missense_Mutation p.E922K 0.05 deleterious(0) probably_damaging(0.997) TCGA-BA-4077-01 13 113744331 113744331 C G MCF2L Intron 0.40 TCGA-BA-4077-01 13 32818298 32818298 G C FRY Missense_Mutation p.K2269N 0.16 deleterious(0) probably_damaging(0.955) TCGA-BA-4077-01 13 95248433 95248433 G C TGDS 5'UTR 0.13 TCGA-BA-4077-01 13 96592328 96592328 C G UGGT2 Missense_Mutation p.K565N 0.04 tolerated(0.2) benign(0.403) TCGA-BA-4077-01 14 106573666 106573666 C G IGHV3-11 Silent p.L5L 0.03 TCGA-BA-4077-01 14 20295739 20295739 C T OR4N2 Silent p.L44L 0.30 TCGA-BA-4077-01 14 20444245 20444245 C G OR4K15 Missense_Mutation p.L190V 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-4077-01 14 21963395 21963395 C G TOX4 Missense_Mutation p.S550C 0.26 tolerated(0.13) probably_damaging(0.971) TCGA-BA-4077-01 14 22447272 22447272 G C TRAV8-6 Missense_Mutation p.E85Q 0.24 deleterious(0.04) benign(0.328) TCGA-BA-4077-01 14 22447304 22447304 G C TRAV8-6 Missense_Mutation p.L95F 0.22 deleterious(0) probably_damaging(0.977) TCGA-BA-4077-01 14 55625360 55625360 C G DLGAP5 Missense_Mutation p.E585Q 0.28 tolerated(0.11) benign(0.378) TCGA-BA-4077-01 14 55643828 55643828 T C DLGAP5 Missense_Mutation p.N334S 0.33 tolerated(0.21) benign(0.084) TCGA-BA-4077-01 14 65233386 65233386 G C SPTB Intron 0.15 TCGA-BA-4077-01 14 69256568 69256568 G A ZFP36L1 Silent p.S233S 0.09 TCGA-BA-4077-01 14 69520744 69520744 C T DCAF5 Missense_Mutation p.E887K 0.09 tolerated_low_confidence(0.06) benign(0.012) TCGA-BA-4077-01 14 70235606 70235606 G A SRSF5 Missense_Mutation p.D97N 0.21 tolerated(0.43) benign(0.008) TCGA-BA-4077-01 14 71485846 71485846 C T PCNX Silent p.L1039L 0.13 TCGA-BA-4077-01 14 76090952 76090952 C G FLVCR2 Intron 0.23 TCGA-BA-4077-01 14 81743698 81743698 C T STON2 Missense_Mutation p.E653K 0.11 tolerated(0.18) possibly_damaging(0.804) TCGA-BA-4077-01 14 81743806 81743806 C T STON2 Missense_Mutation p.D617N 0.10 deleterious(0.02) probably_damaging(0.966) TCGA-BA-4077-01 14 81743896 81743896 C T STON2 Missense_Mutation p.D587N 0.08 deleterious(0.05) possibly_damaging(0.894) TCGA-BA-4077-01 14 94103615 94103615 G C UNC79 Missense_Mutation p.D1786H 0.22 deleterious_low_confidence(0.01) benign(0.002) TCGA-BA-4077-01 14 96730571 96730571 G C BDKRB1 Silent p.L184L 0.14 TCGA-BA-4077-01 14 96777489 96777489 C T ATG2B Missense_Mutation p.D1376N 0.09 tolerated(0.13) benign(0.001) TCGA-BA-4077-01 15 100340355 100340355 C G DNM1P46 RNA 0.11 TCGA-BA-4077-01 15 41762577 41762577 G T RTF1 Missense_Mutation p.D338Y 0.10 tolerated(0.06) probably_damaging(0.956) TCGA-BA-4077-01 15 43749026 43749026 C G TP53BP1 Missense_Mutation p.D594H 0.31 deleterious(0.05) benign(0.029) TCGA-BA-4077-01 15 48796097 48796097 C G FBN1 Missense_Mutation p.R667T 0.10 probably_damaging(0.994) TCGA-BA-4077-01 15 49176472 49176472 G T SHC4 Silent p.L271L 0.23 TCGA-BA-4077-01 15 55497679 55497679 A C RAB27A 3'UTR 0.33 TCGA-BA-4077-01 15 63866568 63866568 G T USP3 Missense_Mutation p.K354N 0.06 deleterious(0.04) probably_damaging(0.996) TCGA-BA-4077-01 15 63966767 63966767 T A HERC1 Missense_Mutation p.E2540D 0.31 benign(0.003) TCGA-BA-4077-01 15 65702644 65702644 G C IGDCC4 Missense_Mutation p.F145L 0.11 deleterious(0.03) possibly_damaging(0.823) TCGA-BA-4077-01 15 66791763 66791763 C T RPL4 Silent p.E422E 0.06 TCGA-BA-4077-01 15 73659999 73659999 C T HCN4 Missense_Mutation p.E205K 0.10 deleterious(0.01) unknown(0) TCGA-BA-4077-01 15 73862516 73862516 C T NPTN Silent p.R363R 0.12 TCGA-BA-4077-01 15 75500848 75500848 C A C15orf39 Missense_Mutation p.S820Y 0.12 deleterious(0) probably_damaging(0.959) TCGA-BA-4077-01 15 76584999 76584999 G T ETFA Missense_Mutation p.L77M 0.16 deleterious(0) probably_damaging(0.967) TCGA-BA-4077-01 15 77287904 77287904 G A PSTPIP1 5'UTR 0.11 TCGA-BA-4077-01 15 77906720 77906720 G A LINGO1 Missense_Mutation p.A510V 0.22 tolerated(0.35) benign(0.262) TCGA-BA-4077-01 15 79058055 79058055 C T ADAMTS7 Missense_Mutation p.E1400K 0.08 tolerated(0.18) benign(0.006) TCGA-BA-4077-01 15 93007636 93007636 C G ST8SIA2 3'UTR 0.13 TCGA-BA-4077-01 16 1400230 1400230 G C TSR3 Missense_Mutation p.P178A 0.09 tolerated(0.47) benign(0.014) TCGA-BA-4077-01 16 1608111 1608111 C T IFT140 Missense_Mutation p.E742K 0.06 tolerated(0.8) benign(0.001) TCGA-BA-4077-01 16 1706343 1706343 G A CRAMP1L Missense_Mutation p.E529K 0.33 deleterious_low_confidence(0.05) possibly_damaging(0.477) TCGA-BA-4077-01 16 19543747 19543747 G C CCP110 Missense_Mutation p.E51Q 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-BA-4077-01 16 29884920 29884920 G A SEZ6L2 Silent p.L745L 0.12 TCGA-BA-4077-01 16 30387201 30387201 T C MYLPF Missense_Mutation p.F22L 0.20 deleterious(0.02) benign(0.024) TCGA-BA-4077-01 16 30666893 30666893 T A PRR14 Missense_Mutation p.M462K 0.14 deleterious(0) probably_damaging(0.998) TCGA-BA-4077-01 16 30666894 30666894 G A PRR14 Missense_Mutation p.M462I 0.14 deleterious(0) probably_damaging(0.996) TCGA-BA-4077-01 16 30767526 30767526 C G PHKG2 Missense_Mutation p.L194V 0.29 deleterious(0) probably_damaging(0.998) TCGA-BA-4077-01 16 57060138 57060138 C T NLRC5 Missense_Mutation p.S428F 0.38 deleterious(0) benign(0.101) TCGA-BA-4077-01 16 75563052 75563052 C G CHST5 Missense_Mutation p.D411H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-BA-4077-01 16 75563522 75563522 C G CHST5 Missense_Mutation p.W254S 0.31 tolerated(0.53) benign(0.06) TCGA-BA-4077-01 16 823207 823207 G T MSLNL Silent p.L687L 0.08 TCGA-BA-4077-01 17 2600219 2600219 T A CLUH Missense_Mutation p.K622M 0.40 deleterious(0) probably_damaging(0.971) TCGA-BA-4077-01 17 26688298 26688298 G C TMEM199 3'UTR 0.09 TCGA-BA-4077-01 17 27209040 27209040 C T FLOT2 Missense_Mutation p.E236K 0.23 deleterious(0.05) possibly_damaging(0.493) TCGA-BA-4077-01 17 33348692 33348692 G A RFFL Nonsense_Mutation p.Q97* 0.12 TCGA-BA-4077-01 17 33469078 33469078 G A NLE1 Silent p.L28L 0.21 TCGA-BA-4077-01 17 36486529 36486529 C A GPR179 Missense_Mutation p.A975S 0.34 tolerated(0.18) possibly_damaging(0.521) TCGA-BA-4077-01 17 37880180 37880180 G C ERBB2 Missense_Mutation p.D742H 0.06 deleterious(0) probably_damaging(0.938) TCGA-BA-4077-01 17 3803019 3803019 C T P2RX1 Missense_Mutation p.D262N 0.06 tolerated(0.61) possibly_damaging(0.447) TCGA-BA-4077-01 17 39847033 39847033 G A EIF1 Splice_Site p.X100_splice 0.23 TCGA-BA-4077-01 17 39881154 39881154 C T HAP1 Missense_Mutation p.M553I 0.36 deleterious_low_confidence(0.01) benign(0.043) TCGA-BA-4077-01 17 39881246 39881246 C G HAP1 Missense_Mutation p.E523Q 0.30 deleterious(0.05) possibly_damaging(0.607) TCGA-BA-4077-01 17 4015950 4015950 A C ZZEF1 Missense_Mutation p.V340G 0.32 deleterious(0) probably_damaging(0.937) TCGA-BA-4077-01 17 41622708 41622708 C A ETV4 Nonsense_Mutation p.E30* 0.27 TCGA-BA-4077-01 17 42757999 42757999 C G CCDC43 Missense_Mutation p.E147D 0.14 tolerated(0.2) benign(0.015) TCGA-BA-4077-01 17 4542786 4542786 G A ALOX15 Silent p.V92V 0.17 TCGA-BA-4077-01 17 4862900 4862900 C T SPAG7 Missense_Mutation p.E205K 0.38 deleterious(0.01) possibly_damaging(0.727) TCGA-BA-4077-01 17 4862903 4862903 C T SPAG7 Missense_Mutation p.E204K 0.36 deleterious(0) probably_damaging(0.914) TCGA-BA-4077-01 17 4863614 4863614 C A SPAG7 Splice_Site p.X81_splice 0.36 TCGA-BA-4077-01 17 56493009 56493009 C A RNF43 5'UTR 0.18 TCGA-BA-4077-01 17 59968949 59968949 C T INTS2 Silent p.S608S 0.36 TCGA-BA-4077-01 17 60060429 60060429 G C MED13 Missense_Mutation p.Q979E 0.13 deleterious(0.02) probably_damaging(0.977) TCGA-BA-4077-01 17 60758228 60758228 G A MRC2 Silent p.A847A 0.06 TCGA-BA-4077-01 17 60814396 60814396 G C MARCH10 Missense_Mutation p.S278C 0.20 deleterious(0) probably_damaging(0.976) TCGA-BA-4077-01 17 62223821 62223821 G C TEX2 3'Flank 0.19 TCGA-BA-4077-01 17 65052498 65052498 C G CACNG1 3'UTR 0.22 TCGA-BA-4077-01 17 73658604 73658604 C T RECQL5 Silent p.L242L 0.35 TCGA-BA-4077-01 17 7417029 7417029 C G POLR2A Missense_Mutation p.P1816A 0.34 unknown(0) TCGA-BA-4077-01 17 7812049 7812049 G T CHD3 Missense_Mutation p.D1825Y 0.10 probably_damaging(0.961) TCGA-BA-4077-01 18 12264384 12264384 G T CIDEA Nonsense_Mutation p.E88* 0.34 TCGA-BA-4077-01 18 19996658 19996658 C T CTAGE1 Missense_Mutation p.E373K 0.13 deleterious(0) probably_damaging(0.911) TCGA-BA-4077-01 18 33554876 33554876 G C C18orf21 Missense_Mutation p.E40Q 0.17 tolerated(0.09) benign(0.27) TCGA-BA-4077-01 18 72167178 72167178 C T CNDP2 5'UTR 0.36 TCGA-BA-4077-01 19 10395132 10395132 G T ICAM1 Nonsense_Mutation p.E327* 0.32 TCGA-BA-4077-01 19 11231182 11231182 G A LDLR Missense_Mutation p.M708I 0.15 deleterious(0.02) possibly_damaging(0.457) TCGA-BA-4077-01 19 17330509 17330509 G A USE1 Missense_Mutation p.E223K 0.30 deleterious(0) possibly_damaging(0.897) TCGA-BA-4077-01 19 17476503 17476503 G C PLVAP Silent p.L257L 0.03 TCGA-BA-4077-01 19 19656361 19656361 C A CILP2 Silent p.R1003R 0.49 TCGA-BA-4077-01 19 20308540 20308540 G C ZNF486 Missense_Mutation p.E341Q 0.29 deleterious(0.03) benign(0.26) TCGA-BA-4077-01 19 3148635 3148635 C T GNA15 Silent p.I64I 0.33 TCGA-BA-4077-01 19 33183421 33183421 C G NUDT19 Silent p.L185L 0.38 TCGA-BA-4077-01 19 35941408 35941408 C G FFAR2 Silent p.L264L 0.21 TCGA-BA-4077-01 19 36278704 36278704 C T ARHGAP33 Silent p.L918L 0.26 TCGA-BA-4077-01 19 40357470 40357470 G C FCGBP Silent p.V5281V 0.11 TCGA-BA-4077-01 19 5274263 5274263 G A PTPRS Missense_Mutation p.P62S 0.25 deleterious(0) possibly_damaging(0.789) TCGA-BA-4077-01 19 5274264 5274264 C A PTPRS Missense_Mutation p.K61N 0.24 deleterious(0.01) possibly_damaging(0.51) TCGA-BA-4077-01 19 54080952 54080952 G A ZNF331 Missense_Mutation p.E380K 0.35 tolerated(0.07) probably_damaging(0.994) TCGA-BA-4077-01 19 54758747 54758747 G A LILRB5 Missense_Mutation p.S369L 0.07 deleterious(0.03) possibly_damaging(0.634) TCGA-BA-4077-01 19 55994342 55994342 C A ZNF628 Missense_Mutation p.F594L 0.12 deleterious(0.04) probably_damaging(0.916) TCGA-BA-4077-01 19 57175754 57175754 G A ZNF835 Silent p.I271I 0.50 TCGA-BA-4077-01 19 58101557 58101557 T G ZIK1 Silent p.V126V 0.31 TCGA-BA-4077-01 19 5914740 5914740 C A CAPS Silent p.R84R 0.21 TCGA-BA-4077-01 19 8601428 8601428 C G MYO1F Missense_Mutation p.R618T 0.32 deleterious(0) probably_damaging(0.981) TCGA-BA-4077-01 19 9452241 9452241 T G ZNF559 Intron 0.23 TCGA-BA-4077-01 19 9452472 9452472 A G ZNF559 Silent p.R115R 0.11 TCGA-BA-4077-01 1 109275982 109275991 TTACAGCACT A FNDC7 In_Frame_Del p.N656_T659delinsK 0.29 TCGA-BA-4077-01 1 111989744 111989744 G A WDR77 Nonsense_Mutation p.Q156* 0.20 TCGA-BA-4077-01 1 113212164 113212164 G T CAPZA1 Splice_Site p.X220_splice 0.17 TCGA-BA-4077-01 1 149754421 149754421 G C HIST2H2BF 3'UTR 0.30 TCGA-BA-4077-01 1 149858934 149858934 G A HIST2H2AC 3'UTR 0.06 TCGA-BA-4077-01 1 152278805 152278805 G T FLG Missense_Mutation p.H2853N 0.16 benign(0.099) TCGA-BA-4077-01 1 153984740 153984740 C T NUP210L Missense_Mutation p.R1587K 0.08 tolerated(0.39) benign(0.005) TCGA-BA-4077-01 1 155039242 155039242 C G EFNA4 Silent p.L50L 0.34 TCGA-BA-4077-01 1 155279994 155279994 G A FDPS Missense_Mutation p.E113K 0.11 tolerated(0.57) benign(0.063) TCGA-BA-4077-01 1 16458218 16458218 C T EPHA2 Missense_Mutation p.E825K 0.11 deleterious(0) probably_damaging(0.999) TCGA-BA-4077-01 1 169672451 169672451 C T SELL Silent p.K312K 0.05 TCGA-BA-4077-01 1 17017742 17017742 G A ESPNP RNA 0.17 TCGA-BA-4077-01 1 173552647 173552647 C G SLC9C2 Missense_Mutation p.R213T 0.07 tolerated(0.4) benign(0.038) TCGA-BA-4077-01 1 183511286 183511286 C T SMG7 Silent p.P497P 0.34 TCGA-BA-4077-01 1 202742383 202742383 A - KDM5B Frame_Shift_Del p.C147Afs*45 0.26 TCGA-BA-4077-01 1 22158995 22158995 C T HSPG2 Missense_Mutation p.E3734K 0.13 probably_damaging(0.997) TCGA-BA-4077-01 1 222801826 222801826 G C MIA3 Missense_Mutation p.D422H 0.10 deleterious(0.02) benign(0.236) TCGA-BA-4077-01 1 230338990 230338990 G A GALNT2 Missense_Mutation p.D110N 0.17 deleterious(0) probably_damaging(1) TCGA-BA-4077-01 1 24432564 24432564 C G MYOM3 Missense_Mutation p.E136Q 0.16 tolerated(0.1) benign(0.156) TCGA-BA-4077-01 1 248616845 248616845 G C OR2T2 Silent p.V249V 0.10 TCGA-BA-4077-01 1 26620764 26620764 G A UBXN11 Missense_Mutation p.S164L 0.35 tolerated(0.42) possibly_damaging(0.642) TCGA-BA-4077-01 1 26648788 26648788 C G AIM1L Silent p.V714V 0.07 TCGA-BA-4077-01 1 27106087 27106087 G C ARID1A Missense_Mutation p.D1900H 0.06 benign(0.033) TCGA-BA-4077-01 1 27189782 27189782 A G SFN Missense_Mutation p.K27E 0.33 tolerated_low_confidence(0.14) benign(0.01) TCGA-BA-4077-01 1 27190331 27190331 G T SFN Nonsense_Mutation p.E210* 0.29 TCGA-BA-4077-01 1 32160810 32160810 C A COL16A1 Missense_Mutation p.V320F 0.19 unknown(0) TCGA-BA-4077-01 1 3394440 3394440 C G ARHGEF16 Missense_Mutation p.S492C 0.17 deleterious(0) possibly_damaging(0.827) TCGA-BA-4077-01 1 36384759 36384759 G T AGO1 Missense_Mutation p.R790L 0.31 deleterious(0) probably_damaging(0.999) TCGA-BA-4077-01 1 40422867 40422867 C T MFSD2A Nonsense_Mutation p.Q68* 0.33 TCGA-BA-4077-01 1 43021987 43021987 G T CCDC30 Missense_Mutation p.V196L 0.27 tolerated(0.37) benign(0.21) TCGA-BA-4077-01 1 44820585 44820585 C G ERI3 Silent p.P38P 0.08 TCGA-BA-4077-01 1 45296710 45296710 C T PTCH2 Missense_Mutation p.R208H 0.38 tolerated(0.17) benign(0.003) TCGA-BA-4077-01 1 4772109 4772109 C T AJAP1 Missense_Mutation p.P60L 0.24 tolerated(0.74) benign(0.146) TCGA-BA-4077-01 1 54233687 54233687 C T NDC1 Missense_Mutation p.E661K 0.11 deleterious(0) probably_damaging(0.936) TCGA-BA-4077-01 1 54332512 54332512 T C YIPF1 Silent p.K189K 0.09 TCGA-BA-4077-01 1 60331554 60331554 C T HOOK1 Silent p.I585I 0.37 TCGA-BA-4077-01 1 67889986 67889986 G A SERBP1 Nonsense_Mutation p.Q239* 0.08 TCGA-BA-4077-01 1 892498 892498 G A NOC2L Missense_Mutation p.S112F 0.15 deleterious(0.02) benign(0.02) TCGA-BA-4077-01 1 89448482 89448482 C G RBMXL1 Missense_Mutation p.R343T 0.23 deleterious(0.02) benign(0.272) TCGA-BA-4077-01 20 32026798 32026798 G A SNTA1 Silent p.S115S 0.07 TCGA-BA-4077-01 20 33730263 33730263 C A EDEM2 Nonsense_Mutation p.E93* 0.17 TCGA-BA-4077-01 20 35299789 35299789 C G NDRG3 Silent p.L181L 0.37 TCGA-BA-4077-01 20 37356988 37356988 G A SLC32A1 Silent p.L428L 0.22 TCGA-BA-4077-01 20 37535627 37535627 G T PPP1R16B Missense_Mutation p.Q276H 0.10 tolerated(1) benign(0.008) TCGA-BA-4077-01 20 39742733 39742733 G C TOP1 Missense_Mutation p.E526Q 0.06 deleterious(0.04) probably_damaging(0.99) TCGA-BA-4077-01 20 49510939 49510939 C G ADNP Missense_Mutation p.R104S 0.17 deleterious(0.02) benign(0.203) TCGA-BA-4077-01 20 62648154 62648154 G C PRPF6 Missense_Mutation p.E535Q 0.09 deleterious(0) probably_damaging(0.973) TCGA-BA-4077-01 20 62701226 62701226 C T TCEA2 Intron 0.33 TCGA-BA-4077-01 21 10959802 10959802 T C TPTE Splice_Site p.X58_splice 0.21 TCGA-BA-4077-01 21 11038916 11038916 G A BAGE2 RNA 0.10 TCGA-BA-4077-01 21 39671931 39671931 C T KCNJ15 Silent p.L250L 0.33 TCGA-BA-4077-01 21 39672352 39672352 C A KCNJ15 3'UTR 0.28 TCGA-BA-4077-01 21 39672370 39672370 C G KCNJ15 3'UTR 0.27 TCGA-BA-4077-01 21 47636350 47636350 C T LSS Missense_Mutation p.V246I 0.40 tolerated(0.19) benign(0) TCGA-BA-4077-01 22 24135750 24135750 C A SMARCB1 Missense_Mutation p.H79Q 0.35 tolerated(0.2) benign(0.004) TCGA-BA-4077-01 22 24439409 24439409 T C CABIN1 Missense_Mutation p.I130T 0.27 deleterious(0) probably_damaging(0.997) TCGA-BA-4077-01 22 24580746 24580746 C G SUSD2 Nonsense_Mutation p.S207* 0.16 TCGA-BA-4077-01 22 30689980 30689980 G A TBC1D10A Silent p.F282F 0.12 TCGA-BA-4077-01 22 50656807 50656807 G A TUBGCP6 Missense_Mutation p.S1660F 0.20 deleterious(0) probably_damaging(0.999) TCGA-BA-4077-01 2 11053214 11053214 C T KCNF1 Missense_Mutation p.T221M 0.26 tolerated(0.11) benign(0.052) TCGA-BA-4077-01 2 120369265 120369265 C T PCDP1 Nonsense_Mutation p.Q420* 0.27 TCGA-BA-4077-01 2 139429126 139429126 C T NXPH2 Missense_Mutation p.S54N 0.33 tolerated(1) benign(0) TCGA-BA-4077-01 2 144381721 144381727 CGACAGC - ARHGAP15 Frame_Shift_Del p.D342Sfs*12 0.50 TCGA-BA-4077-01 2 158177719 158177719 A G ERMN 3'UTR 0.46 TCGA-BA-4077-01 2 158971685 158971685 G C UPP2 Missense_Mutation p.E142Q 0.08 tolerated(0.35) benign(0.007) TCGA-BA-4077-01 2 160604337 160604337 C T MARCH7 Missense_Mutation p.S179L 0.46 deleterious(0) benign(0.22) TCGA-BA-4077-01 2 179403524 179403524 G A TTN Missense_Mutation p.S33011F 0.13 TCGA-BA-4077-01 2 198353732 198353732 C - HSPD1 Frame_Shift_Del p.L404* 0.25 TCGA-BA-4077-01 2 211521293 211521293 C A CPS1 Silent p.V1207V 0.64 TCGA-BA-4077-01 2 217279529 217279529 G C SMARCAL1 Missense_Mutation p.Q34H 0.32 deleterious_low_confidence(0.05) possibly_damaging(0.625) TCGA-BA-4077-01 2 219510915 219510915 C T ZNF142 Missense_Mutation p.R477Q 0.16 deleterious(0) benign(0.238) TCGA-BA-4077-01 2 219510998 219510998 C T ZNF142 Silent p.L449L 0.23 TCGA-BA-4077-01 2 234184556 234184556 G A ATG16L1 Intron 0.50 TCGA-BA-4077-01 2 238255176 238255176 C T COL6A3 Silent p.Q2354Q 0.53 TCGA-BA-4077-01 2 240985469 240985469 G C OR6B3 Silent p.T7T 0.61 TCGA-BA-4077-01 2 240985470 240985470 G T OR6B3 Missense_Mutation p.T7N 0.60 deleterious(0) possibly_damaging(0.616) TCGA-BA-4077-01 2 25039552 25039552 G C CENPO Missense_Mutation p.R211T 0.31 deleterious(0) probably_damaging(0.962) TCGA-BA-4077-01 2 26534512 26534512 C T GPR113 Missense_Mutation p.R695Q 0.32 tolerated(1) benign(0.001) TCGA-BA-4077-01 2 26679336 26679336 C G DRC1 Missense_Mutation p.S725C 0.13 deleterious(0.01) possibly_damaging(0.769) TCGA-BA-4077-01 2 27278716 27278716 G A AGBL5 Missense_Mutation p.D359N 0.17 tolerated(0.25) benign(0.101) TCGA-BA-4077-01 2 44174428 44174430 TTA CT LRPPRC Frame_Shift_Del p.L682Qfs*6 0.27 TCGA-BA-4077-01 2 50850564 50850564 G T NRXN1 Missense_Mutation p.S374Y 0.17 tolerated(0.54) probably_damaging(0.925) TCGA-BA-4077-01 2 85598302 85598302 G T ELMOD3 Nonsense_Mutation p.E152* 0.07 TCGA-BA-4077-01 3 107491933 107491933 G C BBX Missense_Mutation p.K455N 0.67 deleterious(0) probably_damaging(0.996) TCGA-BA-4077-01 3 107492069 107492069 G C BBX Missense_Mutation p.E501Q 0.65 deleterious(0.01) benign(0.21) TCGA-BA-4077-01 3 107492081 107492081 G C BBX Missense_Mutation p.D505H 0.64 deleterious(0) benign(0.1) TCGA-BA-4077-01 3 107492134 107492134 G C BBX Missense_Mutation p.L522F 0.54 tolerated(0.13) possibly_damaging(0.83) TCGA-BA-4077-01 3 107492152 107492152 G - BBX Frame_Shift_Del p.V531* 0.41 TCGA-BA-4077-01 3 107492191 107492191 G A BBX Silent p.E541E 0.44 TCGA-BA-4077-01 3 107492201 107492201 G A BBX Missense_Mutation p.D545N 0.39 tolerated(0.09) benign(0.015) TCGA-BA-4077-01 3 112968688 112968688 G T BOC Missense_Mutation p.R13S 0.12 deleterious(0) benign(0.004) TCGA-BA-4077-01 3 113187686 113187686 G C SPICE1 Missense_Mutation p.S271C 0.13 deleterious(0.01) possibly_damaging(0.58) TCGA-BA-4077-01 3 113724682 113724682 G A KIAA1407 Missense_Mutation p.A514V 0.07 tolerated(0.17) benign(0.094) TCGA-BA-4077-01 3 114069347 114069347 G A ZBTB20 Silent p.F526F 0.15 TCGA-BA-4077-01 3 115561400 115561400 C G LSAMP Missense_Mutation p.K225N 0.13 deleterious(0) benign(0.033) TCGA-BA-4077-01 3 121395796 121395796 C G GOLGB1 Missense_Mutation p.D3041H 0.06 probably_damaging(0.97) TCGA-BA-4077-01 3 126184995 126184995 G C ZXDC Intron 0.09 TCGA-BA-4077-01 3 127788551 127788551 G A SEC61A1 3'UTR 0.17 TCGA-BA-4077-01 3 130361868 130361868 G A COL6A6 Splice_Site p.X1743_splice 0.15 TCGA-BA-4077-01 3 13538259 13538259 C T HDAC11 Silent p.I92I 0.04 TCGA-BA-4077-01 3 137484129 137484129 C T SOX14 Missense_Mutation p.S168F 0.41 deleterious(0) benign(0.04) TCGA-BA-4077-01 3 165547864 165547864 G C BCHE Missense_Mutation p.P320A 0.11 deleterious(0) probably_damaging(0.997) TCGA-BA-4077-01 3 171431715 171431715 C G PLD1 Silent p.T293T 0.59 TCGA-BA-4077-01 3 173322762 173322762 G C NLGN1 Missense_Mutation p.R125T 0.05 tolerated(0.65) probably_damaging(0.946) TCGA-BA-4077-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.61 deleterious(0.02) probably_damaging(0.959) TCGA-BA-4077-01 3 195782122 195782122 C G TFRC Silent p.L576L 0.11 TCGA-BA-4077-01 3 197712706 197712706 G C LMLN Missense_Mutation p.D292H 0.09 deleterious(0.01) probably_damaging(0.935) TCGA-BA-4077-01 3 25670595 25670595 G A TOP2B Silent p.F572F 0.46 TCGA-BA-4077-01 3 44844322 44844322 G C KIF15 Missense_Mutation p.R509T 0.15 deleterious(0.01) possibly_damaging(0.85) TCGA-BA-4077-01 3 45077096 45077096 G C CLEC3B Missense_Mutation p.D97H 0.36 deleterious(0.02) benign(0.144) TCGA-BA-4077-01 3 47451515 47451515 G A PTPN23 Missense_Mutation p.E743K 0.56 unknown(0) TCGA-BA-4077-01 3 49040007 49040007 C G P4HTM Missense_Mutation p.I234M 0.50 deleterious(0.01) benign(0.05) TCGA-BA-4077-01 3 57291322 57291322 A G APPL1 Silent p.G432G 0.64 TCGA-BA-4077-01 4 123855341 123855341 G A SPATA5 Missense_Mutation p.D199N 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-BA-4077-01 4 1389354 1389354 G A CRIPAK Missense_Mutation p.R352H 0.44 tolerated(0.1) probably_damaging(0.984) TCGA-BA-4077-01 4 147431156 147431156 G T SLC10A7 Missense_Mutation p.Q77K 0.36 deleterious(0) probably_damaging(0.994) TCGA-BA-4077-01 4 153784795 153784795 C T ARFIP1 Missense_Mutation p.S44L 0.09 deleterious(0.01) possibly_damaging(0.829) TCGA-BA-4077-01 4 155252756 155252756 G C DCHS2 Missense_Mutation p.L782V 0.33 tolerated(0.59) benign(0.01) TCGA-BA-4077-01 4 164271639 164271639 C T NPY5R Nonsense_Mutation p.Q72* 0.20 TCGA-BA-4077-01 4 170321692 170321692 C G NEK1 Missense_Mutation p.E1232Q 0.17 tolerated(0.17) benign(0.168) TCGA-BA-4077-01 4 186545444 186545444 G A SORBS2 Missense_Mutation p.S476F 0.36 deleterious(0) probably_damaging(0.929) TCGA-BA-4077-01 4 3441262 3441262 C T RGS12 Missense_Mutation p.R1399W 0.40 tolerated_low_confidence(0.12) benign(0.109) TCGA-BA-4077-01 4 76886972 76886972 A G SDAD1 Missense_Mutation p.V350A 0.25 deleterious(0.02) benign(0.102) TCGA-BA-4077-01 4 78081937 78081939 GAA - CCNG2 In_Frame_Del p.E115del 0.36 TCGA-BA-4077-01 4 81952485 81952485 G A BMP3 Missense_Mutation p.C16Y 0.33 tolerated(0.12) benign(0.002) TCGA-BA-4077-01 4 87705639 87705639 G A PTPN13 Missense_Mutation p.E2021K 0.10 tolerated(0.42) benign(0.272) TCGA-BA-4077-01 5 112337070 112337070 C G DCP2 Missense_Mutation p.S201C 0.19 tolerated(0.08) probably_damaging(0.987) TCGA-BA-4077-01 5 13864529 13864529 G A DNAH5 Silent p.L1525L 0.06 TCGA-BA-4077-01 5 140230180 140230180 G A PCDHA9 Silent p.L700L 0.06 TCGA-BA-4077-01 5 140502348 140502348 A G PCDHB4 Silent p.L256L 0.26 TCGA-BA-4077-01 5 140868963 140868963 G C PCDHGC5 Silent p.L52L 0.12 TCGA-BA-4077-01 5 140955833 140955833 C G DIAPH1 Missense_Mutation p.E475D 0.20 unknown(0) TCGA-BA-4077-01 5 148406131 148406131 T C SH3TC2 Intron 0.38 TCGA-BA-4077-01 5 176795809 176795809 C T RGS14 Missense_Mutation p.S314F 0.41 tolerated(0.48) probably_damaging(0.983) TCGA-BA-4077-01 5 176899143 176899143 C A DBN1 Missense_Mutation p.E23D 0.14 tolerated_low_confidence(0.61) benign(0) TCGA-BA-4077-01 5 226112 226112 T C SDHA Missense_Mutation p.C191R 0.12 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-BA-4077-01 5 56531816 56531816 G A GPBP1 Silent p.E152E 0.06 TCGA-BA-4077-01 5 57755707 57755707 C T PLK2 Missense_Mutation p.G27E 0.11 tolerated_low_confidence(0.99) benign(0.001) TCGA-BA-4077-01 5 60183269 60183269 C G ERCC8 Missense_Mutation p.E374Q 0.24 tolerated(0.3) benign(0.044) TCGA-BA-4077-01 5 63256428 63256428 G A HTR1A Silent p.S373S 0.35 TCGA-BA-4077-01 5 79616896 79616896 G A SPZ1 Missense_Mutation p.G288S 0.40 tolerated(0.52) benign(0.001) TCGA-BA-4077-01 5 79617264 79617264 C G SPZ1 Missense_Mutation p.F410L 0.23 tolerated(0.33) benign(0.065) TCGA-BA-4077-01 5 80390809 80390809 C G RASGRF2 Missense_Mutation p.Q585E 0.15 deleterious(0) benign(0.196) TCGA-BA-4077-01 6 123022599 123022599 G A PKIB 5'UTR 0.33 TCGA-BA-4077-01 6 128643138 128643138 G C PTPRK Intron 0.14 TCGA-BA-4077-01 6 136888996 136888996 G A MAP3K5 Silent p.F1178F 0.30 TCGA-BA-4077-01 6 160176375 160176375 G A WTAP Missense_Mutation p.G308E 0.28 deleterious_low_confidence(0.02) benign(0.295) TCGA-BA-4077-01 6 160200096 160200096 G A TCP1 Missense_Mutation p.S551F 0.19 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-BA-4077-01 6 161134091 161134091 G A PLG Missense_Mutation p.G161R 0.32 deleterious(0.03) probably_damaging(0.915) TCGA-BA-4077-01 6 161134092 161134092 G A PLG Missense_Mutation p.G161E 0.32 deleterious(0) probably_damaging(0.915) TCGA-BA-4077-01 6 168276155 168276155 C G MLLT4 Nonsense_Mutation p.S240* 0.14 TCGA-BA-4077-01 6 169053734 169053734 G A SMOC2 Missense_Mutation p.E382K 0.24 deleterious(0) probably_damaging(1) TCGA-BA-4077-01 6 27834627 27834627 C T HIST1H1B Silent p.%3D 0.37 TCGA-BA-4077-01 6 31597336 31597336 G A PRRC2A Silent p.L656L 0.37 TCGA-BA-4077-01 6 33165572 33165572 G A RXRB Nonsense_Mutation p.Q263* 0.08 TCGA-BA-4077-01 6 35980010 35980010 C G SLC26A8 Missense_Mutation p.G110R 0.06 deleterious(0) probably_damaging(0.965) TCGA-BA-4077-01 6 39267123 39267123 C G KCNK17 3'UTR 0.14 TCGA-BA-4077-01 6 43543653 43543657 GGCAC - XPO5 5'UTR 0.46 TCGA-BA-4077-01 6 55113511 55113511 G T HCRTR2 Missense_Mutation p.D100Y 0.12 deleterious(0) probably_damaging(1) TCGA-BA-4077-01 6 56458614 56458614 C T DST Silent p.L1568L 0.09 TCGA-BA-4077-01 6 56470575 56470575 C T DST Intron 0.21 TCGA-BA-4077-01 6 74229717 74229717 G A EEF1A1 Silent p.V11V 0.10 TCGA-BA-4077-01 6 89974233 89974233 G C GABRR2 Silent p.L328L 0.18 TCGA-BA-4077-01 7 100678729 100678729 C G MUC17 Silent p.V1344V 0.30 TCGA-BA-4077-01 7 102665558 102665558 C G FBXL13 Missense_Mutation p.E149D 0.14 tolerated(0.54) benign(0.002) TCGA-BA-4077-01 7 104702697 104702697 C T KMT2E Missense_Mutation p.S53L 0.21 deleterious(0.03) benign(0.307) TCGA-BA-4077-01 7 117060270 117060270 C T ASZ1 Silent p.L129L 0.13 TCGA-BA-4077-01 7 117232003 117232003 G A CFTR Silent p.L594L 0.10 TCGA-BA-4077-01 7 129962519 129962519 G A CPA4 3'UTR 0.07 TCGA-BA-4077-01 7 148485666 148485666 G C CUL1 Missense_Mutation p.E499D 0.33 deleterious(0) probably_damaging(0.999) TCGA-BA-4077-01 7 151684344 151684344 G C GALNTL5 Silent p.L212L 0.23 TCGA-BA-4077-01 7 27689115 27689115 C T HIBADH Missense_Mutation p.E77K 0.34 tolerated(0.62) benign(0.011) TCGA-BA-4077-01 7 31378495 31378495 G C NEUROD6 Missense_Mutation p.L130V 0.34 deleterious(0) possibly_damaging(0.874) TCGA-BA-4077-01 7 36429531 36429531 C G ANLN 5'UTR 0.12 TCGA-BA-4077-01 7 44281890 44281890 A G CAMK2B Missense_Mutation p.I249T 0.31 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-BA-4077-01 7 6193669 6193669 G C USP42 Silent p.A828A 0.11 TCGA-BA-4077-01 7 64363754 64363754 G A ZNF273 Missense_Mutation p.R20K 0.36 tolerated_low_confidence(0.84) benign(0.067) TCGA-BA-4077-01 7 64388515 64388515 C T ZNF273 Missense_Mutation p.A270V 0.31 tolerated(0.08) probably_damaging(0.994) TCGA-BA-4077-01 7 77326241 77326241 C T RSBN1L Missense_Mutation p.S152L 0.35 tolerated_low_confidence(0.23) unknown(0) TCGA-BA-4077-01 7 79764544 79764544 T C GNAI1 Missense_Mutation p.L23P 0.41 deleterious(0) probably_damaging(0.97) TCGA-BA-4077-01 7 87214929 87214929 C T ABCB1 Missense_Mutation p.G62E 0.31 deleterious(0) probably_damaging(1) TCGA-BA-4077-01 7 99778218 99778218 G C STAG3 Missense_Mutation p.K13N 0.33 deleterious_low_confidence(0.04) benign(0.009) TCGA-BA-4077-01 8 113697953 113697953 G - CSMD3 Frame_Shift_Del p.L722Cfs*24 0.37 TCGA-BA-4077-01 8 125565089 125565089 C G MTSS1 3'UTR 0.29 TCGA-BA-4077-01 8 12878578 12878578 C T KIAA1456 Silent p.V130V 0.12 TCGA-BA-4077-01 8 144659478 144659478 C T NAPRT1 Missense_Mutation p.D177N 0.76 tolerated(0.11) benign(0.176) TCGA-BA-4077-01 8 17817912 17817912 G C PCM1 Missense_Mutation p.E761Q 0.29 tolerated(0.23) possibly_damaging(0.686) TCGA-BA-4077-01 8 19709251 19709251 C G INTS10 Missense_Mutation p.L690V 0.13 tolerated(0.29) benign(0.159) TCGA-BA-4077-01 8 21900473 21900473 C G FGF17 Missense_Mutation p.L12V 0.38 tolerated(0.14) unknown(0) TCGA-BA-4077-01 8 30209896 30209896 G C TUBBP1 RNA 0.20 TCGA-BA-4077-01 8 35631911 35631911 G T UNC5D Missense_Mutation p.R858I 0.26 deleterious(0) probably_damaging(0.999) TCGA-BA-4077-01 8 68419035 68419035 C T CPA6 Nonsense_Mutation p.W208* 0.41 TCGA-BA-4077-01 8 95507153 95507153 C T KIAA1429 Missense_Mutation p.D1526N 0.08 deleterious(0.03) possibly_damaging(0.566) TCGA-BA-4077-01 9 100862396 100862396 G C TRIM14 Silent p.L118L 0.17 TCGA-BA-4077-01 9 101540657 101540657 T C ANKS6 Missense_Mutation p.Q473R 0.45 tolerated(0.54) benign(0.034) TCGA-BA-4077-01 9 113243615 113243615 C T SVEP1 Missense_Mutation p.D758N 0.12 benign(0.019) TCGA-BA-4077-01 9 114695273 114695273 T A UGCG Missense_Mutation p.V394E 0.26 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-BA-4077-01 9 120476116 120476116 T C TLR4 Silent p.S570S 0.54 TCGA-BA-4077-01 9 124979413 124979413 C G LHX6 Missense_Mutation p.E206Q 0.13 deleterious(0.04) probably_damaging(0.917) TCGA-BA-4077-01 9 125772653 125772653 G C RABGAP1 Missense_Mutation p.K465N 0.19 tolerated(0.49) benign(0.444) TCGA-BA-4077-01 9 129856193 129856193 T A ANGPTL2 Missense_Mutation p.D277V 0.28 deleterious(0) probably_damaging(0.999) TCGA-BA-4077-01 9 130253536 130253536 G C LRSAM1 Missense_Mutation p.E489Q 0.10 deleterious(0) possibly_damaging(0.886) TCGA-BA-4077-01 9 131704017 131704017 C T PHYHD1 Silent p.L293L 0.20 TCGA-BA-4077-01 9 139310638 139310638 C G PMPCA Intron 0.61 TCGA-BA-4077-01 9 35044713 35044713 C T C9orf131 Missense_Mutation p.P696L 0.14 tolerated(0.11) benign(0.104) TCGA-BA-4077-01 9 35720452 35720452 C G TLN1 Missense_Mutation p.E421Q 0.09 deleterious(0) possibly_damaging(0.475) TCGA-BA-4077-01 9 37503070 37503070 G A POLR1E Silent p.L377L 0.16 TCGA-BA-4077-01 9 5029862 5029862 C T JAK2 Silent p.F102F 0.09 TCGA-BA-4077-01 9 79320938 79320939 - CCAT PRUNE2 Frame_Shift_Ins p.E2085Wfs*2 0.23 TCGA-BA-4077-01 9 84606906 84606906 C G SPATA31D1 Silent p.L507L 0.26 TCGA-BA-4077-01 9 91617111 91617111 C T S1PR3 Silent p.L332L 0.07 TCGA-BA-4077-01 X 100615599 100615599 C T BTK Missense_Mutation p.E245K 0.03 tolerated(0.16) benign(0.346) TCGA-BA-4077-01 X 101911992 101911992 C T GPRASP1 Nonsense_Mutation p.Q1051* 0.37 TCGA-BA-4077-01 X 105149322 105149322 C G NRK Silent p.V277V 0.14 TCGA-BA-4077-01 X 108904860 108904860 G T ACSL4 Missense_Mutation p.L574I 0.13 deleterious(0) probably_damaging(0.998) TCGA-BA-4077-01 X 11187736 11187736 C G ARHGAP6 Missense_Mutation p.Q566H 0.11 deleterious(0) probably_damaging(0.978) TCGA-BA-4077-01 X 14038649 14038649 G A GEMIN8 Missense_Mutation p.S7L 0.12 deleterious(0.01) benign(0.223) TCGA-BA-4077-01 X 148072994 148072994 A T AFF2 3'UTR 0.27 TCGA-BA-4077-01 X 153178174 153178174 C T ARHGAP4 Missense_Mutation p.D548N 0.11 tolerated(0.18) benign(0.32) TCGA-BA-4077-01 X 153496185 153496185 G T OPN1MW2 Missense_Mutation p.A305S 0.17 tolerated(0.79) benign(0.312) TCGA-BA-4077-01 X 153689684 153689684 C T PLXNA3 Silent p.I280I 0.14 TCGA-BA-4077-01 X 16142343 16142343 C T GRPR Silent p.L89L 0.07 TCGA-BA-4077-01 X 30269381 30269381 C A MAGEB1 Nonsense_Mutation p.Y257* 0.28 TCGA-BA-4077-01 X 3228112 3228112 C A MXRA5 Missense_Mutation p.C2711F 0.24 deleterious(0) probably_damaging(1) TCGA-BA-4077-01 X 34148687 34148687 G A FAM47A Missense_Mutation p.S570L 0.07 tolerated(0.57) probably_damaging(0.947) TCGA-BA-4077-01 X 38211808 38211808 G C OTC 5'UTR 0.70 TCGA-BA-4077-01 X 46466624 46466624 C A SLC9A7 Silent p.L647L 0.10 TCGA-BA-4077-01 X 48117190 48117190 G T SSX1 Missense_Mutation p.D27Y 0.32 deleterious(0) probably_damaging(0.966) TCGA-BA-4077-01 X 48972603 48972603 C G GPKOW Missense_Mutation p.E330Q 0.08 tolerated(0.25) benign(0.015) TCGA-BA-4077-01 X 50089689 50089689 C T CCNB3 Silent p.I1231I 0.10 TCGA-BA-4077-01 X 50659550 50659550 G T BMP15 Silent p.G374G 0.21 TCGA-BA-4077-01 X 50659551 50659551 A T BMP15 Missense_Mutation p.S375C 0.21 deleterious(0) probably_damaging(0.992) TCGA-BA-4077-01 X 53171977 53171977 G C LINC01155 RNA 0.20 TCGA-BA-4077-01 X 54112314 54112314 C T FAM120C Silent p.Q891Q 0.41 TCGA-BA-4077-01 X 54319739 54319739 C G WNK3 Missense_Mutation p.G572A 0.10 tolerated(0.05) benign(0.02) TCGA-BA-4077-01 X 54476730 54476730 C G FGD1 Missense_Mutation p.E674Q 0.06 tolerated(0.17) benign(0.198) TCGA-BA-4077-01 X 54971904 54971904 C G PFKFB1 Missense_Mutation p.D356H 0.07 probably_damaging(0.985) TCGA-BA-4077-01 X 62974257 62974257 C G ARHGEF9 5'UTR 0.09 TCGA-BA-4077-01 X 69397405 69397405 C T DGAT2L6 5'UTR 0.10 TCGA-BA-4077-01 X 86772826 86772826 G C KLHL4 5'UTR 0.08 TCGA-BA-4078-01 10 101120594 101120594 G C CNNM1 Missense_Mutation p.D574H 0.70 deleterious(0) probably_damaging(0.986) TCGA-BA-4078-01 10 101591439 101591439 G A ABCC2 Silent p.A985A 0.03 TCGA-BA-4078-01 10 1034450 1034450 G T GTPBP4 Missense_Mutation p.V11L 0.78 tolerated(0.08) possibly_damaging(0.701) TCGA-BA-4078-01 10 103558944 103558944 A C MGEA5 Silent p.V488V 0.71 TCGA-BA-4078-01 10 104161253 104161253 C A NFKB2 Silent p.P757P 0.64 TCGA-BA-4078-01 10 108427560 108427560 G T SORCS1 Nonsense_Mutation p.C730* 0.85 TCGA-BA-4078-01 10 114910775 114910775 C T TCF7L2 Silent p.V298V 0.75 TCGA-BA-4078-01 10 117045743 117045743 G T ATRNL1 Nonsense_Mutation p.G751* 0.73 TCGA-BA-4078-01 10 119768413 119768413 C A RAB11FIP2 3'UTR 0.88 TCGA-BA-4078-01 10 128974408 128974408 G T FAM196A Nonsense_Mutation p.Y84* 0.75 TCGA-BA-4078-01 10 135438990 135438990 C T FRG2B Silent p.R150R 0.08 TCGA-BA-4078-01 10 17083215 17083215 A C CUBN Missense_Mutation p.C1278W 0.76 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 10 17142060 17142060 G A CUBN Missense_Mutation p.S570F 0.73 deleterious(0) probably_damaging(0.991) TCGA-BA-4078-01 10 26512888 26512888 C A GAD2 Nonsense_Mutation p.S198* 0.75 TCGA-BA-4078-01 10 27389266 27389266 A T ANKRD26 5'UTR 0.71 TCGA-BA-4078-01 10 43015743 43015743 C A ZNF37BP RNA 0.70 TCGA-BA-4078-01 10 48388397 48388397 G T RBP3 Silent p.P827P 0.58 TCGA-BA-4078-01 10 50121394 50121394 C T LRRC18 Intron 0.67 TCGA-BA-4078-01 10 50532657 50532657 G A C10orf71 Silent p.Q689Q 0.70 TCGA-BA-4078-01 10 52573752 52573752 G T A1CF Nonsense_Mutation p.Y404* 0.75 TCGA-BA-4078-01 10 55600188 55600188 C A PCDH15 Missense_Mutation p.R1292L 0.84 deleterious(0) probably_damaging(0.975) TCGA-BA-4078-01 10 69281617 69281617 C T CTNNA3 Missense_Mutation p.A188T 0.64 tolerated(0.24) possibly_damaging(0.787) TCGA-BA-4078-01 10 8092959 8092959 G T GATA3 5'Flank 0.80 TCGA-BA-4078-01 11 100179246 100179246 A T CNTN5 Intron 0.67 TCGA-BA-4078-01 11 102647451 102647451 G A MMP10 Missense_Mutation p.H227Y 0.74 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 11 102742585 102742585 T A MMP12 RNA 0.94 TCGA-BA-4078-01 11 108213984 108213984 A G ATM Silent p.E2768E 0.74 TCGA-BA-4078-01 11 111896160 111896160 C T DLAT 5'UTR 0.74 TCGA-BA-4078-01 11 114168790 114168790 T A NNMT Missense_Mutation p.L91Q 0.75 tolerated(0.45) possibly_damaging(0.483) TCGA-BA-4078-01 11 117785164 117785164 C T TMPRSS13 Missense_Mutation p.A208T 0.72 tolerated(0.52) benign(0.047) TCGA-BA-4078-01 11 122850115 122850115 C A BSX Missense_Mutation p.G105W 0.70 deleterious(0) probably_damaging(0.982) TCGA-BA-4078-01 11 124294721 124294721 C A OR8B4 Missense_Mutation p.G16V 0.78 deleterious_low_confidence(0) possibly_damaging(0.661) TCGA-BA-4078-01 11 124670355 124670355 C T MSANTD2 5'UTR 1.00 TCGA-BA-4078-01 11 125301365 125301365 G A PKNOX2 3'UTR 0.95 TCGA-BA-4078-01 11 128680979 128680979 A T FLI1 3'UTR 0.85 TCGA-BA-4078-01 11 128709976 128709976 C G KCNJ1 Missense_Mutation p.D74H 0.66 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 11 133802070 133802070 C G IGSF9B Missense_Mutation p.V336L 0.82 tolerated(1) benign(0.102) TCGA-BA-4078-01 11 13716315 13716315 G A FAR1 Translation_Start_Site p.M1? 0.66 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 11 34219030 34219030 C T ABTB2 Silent p.P362P 0.68 TCGA-BA-4078-01 11 40136241 40136241 C A LRRC4C Silent p.V534V 0.79 TCGA-BA-4078-01 11 45970965 45970965 G A PHF21A Silent p.V404V 0.16 TCGA-BA-4078-01 11 47640375 47640375 C A MTCH2 3'UTR 0.18 TCGA-BA-4078-01 11 4790409 4790409 C A OR51F1 Missense_Mutation p.V247L 0.68 tolerated(0.15) benign(0.004) TCGA-BA-4078-01 11 48347133 48347133 G T OR4C3 Missense_Mutation p.C214F 0.30 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 11 49197499 49197499 C A FOLH1 Missense_Mutation p.G311C 0.40 deleterious(0) probably_damaging(0.997) TCGA-BA-4078-01 11 49207359 49207359 C G FOLH1 Missense_Mutation p.D230H 0.32 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 11 55927730 55927730 C T OR8K5 Missense_Mutation p.E22K 0.39 deleterious_low_confidence(0.02) benign(0.079) TCGA-BA-4078-01 11 55944604 55944604 C T OR5J2 Silent p.L171L 0.39 TCGA-BA-4078-01 11 5602862 5602862 C A OR52B6 Silent p.A252A 0.75 TCGA-BA-4078-01 11 56258412 56258412 C A OR5M8 Silent p.T145T 0.33 TCGA-BA-4078-01 11 56344286 56344286 C T OR5M10 Missense_Mutation p.M304I 0.41 tolerated(0.47) benign(0) TCGA-BA-4078-01 11 57156719 57156719 G T PRG2 Missense_Mutation p.Q44K 0.45 tolerated(0.21) benign(0.065) TCGA-BA-4078-01 11 57569636 57569636 C A CTNND1 Missense_Mutation p.A463D 0.34 deleterious(0) possibly_damaging(0.574) TCGA-BA-4078-01 11 59132216 59132216 T C OR5AN1 Silent p.F95F 0.40 TCGA-BA-4078-01 11 59189575 59189575 G T OR5A2 Silent p.P284P 0.43 TCGA-BA-4078-01 11 59189576 59189576 G T OR5A2 Missense_Mutation p.P284H 0.43 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 11 60718768 60718768 G A SLC15A3 Silent p.L86L 0.50 TCGA-BA-4078-01 11 62533149 62533149 G T POLR2G Nonsense_Mutation p.E142* 0.40 TCGA-BA-4078-01 11 64084205 64084205 G A TRMT112 3'UTR 0.62 TCGA-BA-4078-01 11 64668018 64668018 T C ATG2A Missense_Mutation p.Q1471R 0.39 tolerated(0.36) benign(0.002) TCGA-BA-4078-01 11 65546371 65546371 C G AP5B1 Silent p.P531P 0.45 TCGA-BA-4078-01 11 6592373 6592373 G A DNHD1 Missense_Mutation p.G4544D 0.79 probably_damaging(0.998) TCGA-BA-4078-01 11 66103108 66103108 T A RIN1 Missense_Mutation p.Q143L 0.45 deleterious(0.02) benign(0.065) TCGA-BA-4078-01 11 67250562 67250562 G T AIP 5'UTR 0.44 TCGA-BA-4078-01 11 70281737 70281737 G C CTTN Missense_Mutation p.R555S 0.03 deleterious_low_confidence(0) benign(0) TCGA-BA-4078-01 11 70281873 70281873 G T CTTN Intron 0.06 TCGA-BA-4078-01 11 70333064 70333064 C A SHANK2 Missense_Mutation p.V1113L 0.04 tolerated(0.21) benign(0.013) TCGA-BA-4078-01 11 75319187 75319187 G C MAP6 Missense_Mutation p.S362R 0.70 deleterious(0) probably_damaging(0.985) TCGA-BA-4078-01 11 7982797 7982797 T C NLRP10 Missense_Mutation p.Y121C 0.62 deleterious(0.03) benign(0.016) TCGA-BA-4078-01 11 88781022 88781022 G A GRM5 Silent p.L7L 0.57 TCGA-BA-4078-01 11 92714792 92714792 G C MTNR1B Missense_Mutation p.A135P 0.82 deleterious(0) probably_damaging(0.996) TCGA-BA-4078-01 12 100660775 100660775 T C DEPDC4 Missense_Mutation p.N27S 0.44 tolerated(1) benign(0) TCGA-BA-4078-01 12 101295504 101295504 C A ANO4 5'UTR 0.38 TCGA-BA-4078-01 12 101603501 101603501 G A SLC5A8 Silent p.S42S 0.40 TCGA-BA-4078-01 12 104054129 104054129 A T STAB2 Missense_Mutation p.E585D 0.40 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 12 106760311 106760311 A G POLR3B Silent p.K41K 0.50 TCGA-BA-4078-01 12 109522854 109522854 C T USP30 Missense_Mutation p.P422L 0.40 deleterious(0.01) possibly_damaging(0.673) TCGA-BA-4078-01 12 110940123 110940123 G C RAD9B 5'UTR 0.29 TCGA-BA-4078-01 12 124221737 124221737 G T ATP6V0A2 Silent p.V319V 0.42 TCGA-BA-4078-01 12 129559181 129559181 T G TMEM132D Missense_Mutation p.M847L 0.40 tolerated(0.32) benign(0.001) TCGA-BA-4078-01 12 132405981 132405981 G T ULK1 3'UTR 0.38 TCGA-BA-4078-01 12 18644453 18644453 T G PIK3C2G Silent p.P877P 0.41 TCGA-BA-4078-01 12 21965011 21965011 C A ABCC9 Missense_Mutation p.D1395Y 0.34 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 12 22028605 22028605 T C ABCC9 Missense_Mutation p.D692G 0.39 deleterious(0.01) benign(0.06) TCGA-BA-4078-01 12 2929961 2929961 G A ITFG2 Silent p.A206A 0.38 TCGA-BA-4078-01 12 32735204 32735204 A G FGD4 Missense_Mutation p.T135A 0.30 tolerated_low_confidence(0.52) benign(0.001) TCGA-BA-4078-01 12 41422960 41422960 T A CNTN1 Silent p.V973V 0.47 TCGA-BA-4078-01 12 49745133 49745133 G A DNAJC22 Missense_Mutation p.E292K 0.30 deleterious(0.01) possibly_damaging(0.825) TCGA-BA-4078-01 12 51388355 51388355 G C SLC11A2 Missense_Mutation p.S379W 0.37 deleterious(0.01) possibly_damaging(0.848) TCGA-BA-4078-01 12 53012037 53012037 A G KRT73 Missense_Mutation p.L91S 0.41 tolerated(0.08) benign(0.031) TCGA-BA-4078-01 12 54338804 54338804 G A HOXC13 Missense_Mutation p.E253K 0.41 deleterious(0) possibly_damaging(0.452) TCGA-BA-4078-01 12 58197112 58197112 T G AVIL Missense_Mutation p.Q627P 0.39 tolerated(0.2) benign(0.154) TCGA-BA-4078-01 12 63042207 63042207 C A PPM1H 3'UTR 0.37 TCGA-BA-4078-01 12 64790375 64790375 G T RPS11P6 RNA 0.30 TCGA-BA-4078-01 12 6958258 6958258 T C CDCA3 Silent p.Q252Q 0.48 TCGA-BA-4078-01 12 70928431 70928431 C T PTPRB Missense_Mutation p.E2069K 0.49 deleterious(0) probably_damaging(0.914) TCGA-BA-4078-01 12 7294733 7294733 A T CLSTN3 Missense_Mutation p.Q513L 0.28 tolerated(0.14) benign(0.045) TCGA-BA-4078-01 12 76791585 76791585 C A OSBPL8 Missense_Mutation p.W187C 0.40 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 12 8630046 8630046 A T CLEC6A Nonsense_Mutation p.K206* 0.37 TCGA-BA-4078-01 12 9262518 9262518 C T A2M Silent p.V206V 0.40 TCGA-BA-4078-01 12 99548223 99548223 G T ANKS1B Intron 0.49 TCGA-BA-4078-01 13 20039644 20039644 A T TPTE2 Silent p.L191L 0.72 TCGA-BA-4078-01 13 20077407 20077407 T A TPTE2 5'UTR 0.15 TCGA-BA-4078-01 13 25362210 25362211 - A RNF17 Frame_Shift_Ins p.N235Kfs*2 0.54 TCGA-BA-4078-01 13 26129169 26129169 T A ATP8A2 Missense_Mutation p.M409K 0.77 tolerated(0.08) possibly_damaging(0.908) TCGA-BA-4078-01 13 32339279 32339279 T A RXFP2 Missense_Mutation p.L142Q 0.76 deleterious(0) probably_damaging(0.998) TCGA-BA-4078-01 13 39611411 39611411 T A PROSER1 5'UTR 0.76 TCGA-BA-4078-01 13 46357979 46357979 C A SIAH3 Nonsense_Mutation p.E117* 0.71 TCGA-BA-4078-01 13 88329715 88329715 G T SLITRK5 Missense_Mutation p.R691L 0.56 deleterious(0) possibly_damaging(0.677) TCGA-BA-4078-01 14 20403895 20403895 C T OR4K1 Nonsense_Mutation p.Q24* 0.37 TCGA-BA-4078-01 14 20666109 20666109 C A OR11G2 Silent p.S205S 0.76 TCGA-BA-4078-01 14 20846329 20846329 C G TEP1 Missense_Mutation p.V1859L 0.67 tolerated(0.12) benign(0.017) TCGA-BA-4078-01 14 23866242 23866242 C T MYH6 Missense_Mutation p.V700M 0.75 deleterious(0) possibly_damaging(0.87) TCGA-BA-4078-01 14 34247672 34247672 G C NPAS3 Missense_Mutation p.R349S 0.76 deleterious(0.03) possibly_damaging(0.507) TCGA-BA-4078-01 14 35761780 35761780 G T PSMA6 Intron 0.73 TCGA-BA-4078-01 14 50912808 50912808 G A MAP4K5 Silent p.L392L 0.62 TCGA-BA-4078-01 14 65210461 65210461 G T PLEKHG3 3'UTR 0.60 TCGA-BA-4078-01 14 72939588 72939588 G A RGS6 Missense_Mutation p.R182Q 0.69 deleterious(0) benign(0.069) TCGA-BA-4078-01 14 88411945 88411945 C T GALC Nonsense_Mutation p.W541* 0.74 TCGA-BA-4078-01 14 89338730 89338730 C A TTC8 Missense_Mutation p.N427K 0.77 deleterious(0.01) probably_damaging(0.986) TCGA-BA-4078-01 14 92959954 92959954 G A SLC24A4 Missense_Mutation p.M617I 0.93 tolerated(0.08) benign(0.086) TCGA-BA-4078-01 14 95595897 95595897 G A DICER1 Missense_Mutation p.P216S 0.74 deleterious(0.04) benign(0.006) TCGA-BA-4078-01 14 96777573 96777573 T A ATG2B Missense_Mutation p.T1348S 0.77 tolerated(0.43) probably_damaging(0.977) TCGA-BA-4078-01 15 102292722 102292722 C G DNM1P47 RNA 0.23 TCGA-BA-4078-01 15 20496764 20496764 A G CHEK2P2 RNA 0.16 TCGA-BA-4078-01 15 24921370 24921370 C T NPAP1 Missense_Mutation p.P119L 0.42 tolerated(1) benign(0.348) TCGA-BA-4078-01 15 24922340 24922340 T G NPAP1 Silent p.P442P 0.37 TCGA-BA-4078-01 15 25419978 25419978 C A SNORD115-3 5'Flank 0.44 TCGA-BA-4078-01 15 25444432 25444432 G A SNORD115-14 3'Flank 0.27 TCGA-BA-4078-01 15 26026341 26026341 C A ATP10A Missense_Mutation p.W160L 0.48 deleterious(0) possibly_damaging(0.903) TCGA-BA-4078-01 15 43627996 43627996 G A ADAL Missense_Mutation p.D56N 0.45 tolerated(0.21) benign(0.007) TCGA-BA-4078-01 15 45460274 45460274 C G SHF Silent p.V381V 0.30 TCGA-BA-4078-01 15 48428997 48428997 C A SLC24A5 Silent p.A236A 0.44 TCGA-BA-4078-01 15 50336882 50336882 G T ATP8B4 Missense_Mutation p.P70Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 15 50929755 50929755 C A TRPM7 Silent p.L232L 0.50 TCGA-BA-4078-01 15 54307549 54307549 C A UNC13C Missense_Mutation p.Q817K 0.42 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BA-4078-01 15 54307585 54307585 T C UNC13C Silent p.L829L 0.51 TCGA-BA-4078-01 15 62312738 62312738 C A VPS13C Splice_Site p.X209_splice 0.45 TCGA-BA-4078-01 15 65157206 65157206 G C PLEKHO2 Missense_Mutation p.E198Q 0.29 tolerated(0.18) possibly_damaging(0.448) TCGA-BA-4078-01 15 65994823 65994823 T G DENND4A Silent p.A750A 0.50 TCGA-BA-4078-01 15 74865224 74865224 G A ARID3B Missense_Mutation p.D192N 0.31 deleterious(0.02) possibly_damaging(0.864) TCGA-BA-4078-01 15 77907035 77907035 T A LINGO1 Missense_Mutation p.K405M 0.39 tolerated(0.07) benign(0.081) TCGA-BA-4078-01 15 80263104 80263104 A G BCL2A1 Missense_Mutation p.Y120H 0.43 tolerated(0.49) benign(0.005) TCGA-BA-4078-01 15 89388786 89388786 G A ACAN Missense_Mutation p.E368K 0.41 deleterious(0.01) unknown(0) TCGA-BA-4078-01 15 91578573 91578573 A G AC068831.10 RNA 0.17 TCGA-BA-4078-01 16 21817451 21817451 C T RRN3P1 Splice_Site 0.70 TCGA-BA-4078-01 16 26147209 26147209 G T HS3ST4 Silent p.A337A 0.76 TCGA-BA-4078-01 16 50667328 50667328 A G NKD1 Missense_Mutation p.K350R 0.84 deleterious(0.04) possibly_damaging(0.448) TCGA-BA-4078-01 16 50785545 50785545 G - CYLD Frame_Shift_Del p.V180Cfs*23 0.45 TCGA-BA-4078-01 16 55601279 55601279 T C CAPNS2 Missense_Mutation p.M204T 0.74 deleterious(0.02) benign(0.446) TCGA-BA-4078-01 16 67168322 67168322 C T C16orf70 Nonsense_Mutation p.R205* 0.76 TCGA-BA-4078-01 16 67862385 67862385 C T CENPT Silent p.L518L 0.76 TCGA-BA-4078-01 16 68056395 68056395 C A DDX28 Silent p.L237L 0.79 TCGA-BA-4078-01 16 70989378 70989378 C A HYDIN Silent p.L2072L 0.64 TCGA-BA-4078-01 16 74519693 74519693 C T GLG1 Splice_Site p.X524_splice 0.73 TCGA-BA-4078-01 16 984275 984275 C T LMF1 Intron 0.55 TCGA-BA-4078-01 17 10265781 10265781 G T MYH13 Missense_Mutation p.P82T 0.35 deleterious(0) probably_damaging(0.956) TCGA-BA-4078-01 17 10408506 10408506 C A MYH1 Silent p.V803V 0.28 TCGA-BA-4078-01 17 11607761 11607761 T C DNAH9 Splice_Site p.X1797_splice 0.33 TCGA-BA-4078-01 17 17698946 17698946 C - RAI1 Frame_Shift_Del p.P896Hfs*54 0.39 TCGA-BA-4078-01 17 41738516 41738516 G A MEOX1 Silent p.G129G 0.42 TCGA-BA-4078-01 17 42476285 42476285 T A GPATCH8 Nonsense_Mutation p.R1054* 0.45 TCGA-BA-4078-01 17 42744329 42744330 - A C17orf104 Frame_Shift_Ins p.L353Ifs*7 0.32 TCGA-BA-4078-01 17 60755933 60755933 G T MRC2 Silent p.L707L 0.42 TCGA-BA-4078-01 17 61489388 61489388 G A TANC2 Missense_Mutation p.M1191I 0.51 tolerated(0.18) benign(0.017) TCGA-BA-4078-01 17 61893008 61893008 G T DDX42 Missense_Mutation p.R663L 0.32 deleterious(0) probably_damaging(0.997) TCGA-BA-4078-01 17 62291206 62291206 T C TEX2 Silent p.A124A 0.48 TCGA-BA-4078-01 17 63534258 63534258 C T AXIN2 Intron 0.47 TCGA-BA-4078-01 17 67041454 67041454 C G ABCA9 Missense_Mutation p.D110H 0.32 deleterious(0) probably_damaging(0.93) TCGA-BA-4078-01 17 73871028 73871028 C A TRIM47 Nonsense_Mutation p.E485* 0.44 TCGA-BA-4078-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.84 TCGA-BA-4078-01 17 79268767 79268767 G A SLC38A10 5'UTR 0.37 TCGA-BA-4078-01 17 80041269 80041269 G A FASN Missense_Mutation p.H1792Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 17 80159756 80159756 C T CCDC57 Missense_Mutation p.R22K 0.38 tolerated(0.39) benign(0.06) TCGA-BA-4078-01 17 80352369 80352369 G T OGFOD3 Missense_Mutation p.P292T 0.55 tolerated_low_confidence(0.35) possibly_damaging(0.803) TCGA-BA-4078-01 17 8526248 8526248 T C MYH10 Missense_Mutation p.K106R 0.45 probably_damaging(0.994) TCGA-BA-4078-01 17 9683345 9683345 G T DHRS7C Missense_Mutation p.T93N 0.33 tolerated(0.21) possibly_damaging(0.703) TCGA-BA-4078-01 18 12325303 12325303 C T TUBB6 Missense_Mutation p.S172L 0.48 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-BA-4078-01 18 18535194 18535194 G C ROCK1 Missense_Mutation p.H1175Q 0.32 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 18 21901670 21901670 C A OSBPL1A Intron 0.33 TCGA-BA-4078-01 18 2610796 2610796 G A NDC80 Missense_Mutation p.R576Q 0.38 deleterious(0.02) probably_damaging(0.91) TCGA-BA-4078-01 18 32681988 32681988 G C MAPRE2 Missense_Mutation p.D159H 0.44 deleterious(0) probably_damaging(0.998) TCGA-BA-4078-01 18 3447618 3447618 G - TGIF1 5'Flank 0.38 TCGA-BA-4078-01 18 47108775 47108775 C T LIPG Silent p.N360N 0.32 TCGA-BA-4078-01 18 50450086 50450086 T A DCC Missense_Mutation p.L236Q 0.28 tolerated(0.6) benign(0.007) TCGA-BA-4078-01 18 51013172 51013172 G C DCC Missense_Mutation p.V1248L 0.43 tolerated(0.06) possibly_damaging(0.862) TCGA-BA-4078-01 18 59821827 59821827 C - PIGN Frame_Shift_Del p.G167Vfs*33 0.25 TCGA-BA-4078-01 18 63489364 63489364 C A CDH7 Missense_Mutation p.Q225K 0.41 tolerated(0.09) benign(0.101) TCGA-BA-4078-01 18 7016587 7016587 C A LAMA1 Silent p.T964T 0.56 TCGA-BA-4078-01 18 72344239 72344239 G T ZNF407 Missense_Mutation p.V422L 0.43 tolerated(1) benign(0.003) TCGA-BA-4078-01 19 10071086 10071086 C A COL5A3 3'UTR 0.44 TCGA-BA-4078-01 19 10169598 10169598 G A C3P1 RNA 0.50 TCGA-BA-4078-01 19 10794209 10794209 T C ILF3 Silent p.F618F 0.40 TCGA-BA-4078-01 19 11510943 11510943 T C RGL3 Silent p.P505P 0.38 TCGA-BA-4078-01 19 12461204 12461204 G A ZNF442 Missense_Mutation p.H399Y 0.40 deleterious(0) probably_damaging(0.997) TCGA-BA-4078-01 19 15558935 15558935 C A WIZ Missense_Mutation p.D62Y 0.40 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-BA-4078-01 19 16532206 16532206 C A EPS15L1 Missense_Mutation p.G292C 0.47 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 19 17337113 17337113 G C OCEL1 Missense_Mutation p.Q19H 0.16 deleterious_low_confidence(0.05) benign(0.064) TCGA-BA-4078-01 19 17886888 17886888 G T FCHO1 Missense_Mutation p.R367L 0.47 tolerated(0.18) benign(0.074) TCGA-BA-4078-01 19 20002455 20002455 C G ZNF253 Missense_Mutation p.N133K 0.30 deleterious(0.05) probably_damaging(0.986) TCGA-BA-4078-01 19 21607279 21607279 T C ZNF493 Silent p.C606C 0.38 TCGA-BA-4078-01 19 21688524 21688524 A G ZNF429 5'UTR 0.39 TCGA-BA-4078-01 19 22785317 22785317 G T AC011467.1 5'Flank 0.48 TCGA-BA-4078-01 19 32973120 32973120 G T DPY19L3 Missense_Mutation p.V709F 0.41 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 19 33482784 33482784 A T RHPN2 Nonsense_Mutation p.L530* 0.33 TCGA-BA-4078-01 19 33696633 33696633 C T LRP3 Silent p.D319D 0.25 TCGA-BA-4078-01 19 35828817 35828817 C T CD22 Missense_Mutation p.T293M 0.39 tolerated(0.09) benign(0.223) TCGA-BA-4078-01 19 36341873 36341873 G A NPHS1 Silent p.T172T 0.40 TCGA-BA-4078-01 19 3664871 3664871 C T PIP5K1C Silent p.K56K 0.42 TCGA-BA-4078-01 19 36964331 36964331 T C ZNF566 Silent p.V13V 0.39 TCGA-BA-4078-01 19 38934789 38934789 G A RYR1 Missense_Mutation p.G142E 0.27 probably_damaging(0.999) TCGA-BA-4078-01 19 41515933 41515933 A T CYP2B6 Missense_Mutation p.Q286L 0.40 deleterious(0.02) benign(0.033) TCGA-BA-4078-01 19 4200161 4200161 C T ANKRD24 Silent p.D112D 0.14 TCGA-BA-4078-01 19 42352590 42352590 C A DMRTC2 Silent p.P147P 0.19 TCGA-BA-4078-01 19 5134010 5134010 G T KDM4B Missense_Mutation p.A675S 0.40 possibly_damaging(0.84) TCGA-BA-4078-01 19 53013842 53013842 A T ZNF578 Missense_Mutation p.M70L 0.33 tolerated(0.27) benign(0.003) TCGA-BA-4078-01 19 53013843 53013843 T G ZNF578 Missense_Mutation p.M70R 0.33 deleterious(0.02) possibly_damaging(0.563) TCGA-BA-4078-01 19 53384177 53384177 G A ZNF320 Missense_Mutation p.A401V 0.34 tolerated(0.55) benign(0.006) TCGA-BA-4078-01 19 53959133 53959133 A G ZNF761 RNA 0.43 TCGA-BA-4078-01 19 54204540 54204540 G T MIR520B RNA 0.45 TCGA-BA-4078-01 19 54251955 54251955 T A MIR521-1 RNA 0.38 TCGA-BA-4078-01 19 54314439 54314439 G T NLRP12 Silent p.T158T 0.42 TCGA-BA-4078-01 19 54515475 54515475 C A CACNG6 3'UTR 0.38 TCGA-BA-4078-01 19 55494535 55494535 G C NLRP2 Missense_Mutation p.R490P 0.37 deleterious(0.04) possibly_damaging(0.798) TCGA-BA-4078-01 19 55670302 55670302 C T DNAAF3 3'UTR 0.39 TCGA-BA-4078-01 19 56539566 56539566 C A NLRP5 Missense_Mutation p.P656H 0.39 deleterious(0) possibly_damaging(0.868) TCGA-BA-4078-01 19 56895725 56895725 A G ZNF582 Missense_Mutation p.L354P 0.43 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 19 57176253 57176253 C A ZNF835 Missense_Mutation p.G105V 0.40 tolerated(0.43) benign(0.403) TCGA-BA-4078-01 19 5727297 5727297 C A CATSPERD Missense_Mutation p.P49T 0.43 tolerated(0.36) benign(0.009) TCGA-BA-4078-01 19 57910559 57910559 G T ZNF548 Missense_Mutation p.V314F 0.37 deleterious(0.04) probably_damaging(0.952) TCGA-BA-4078-01 19 57988731 57988731 T A ZNF772 5'UTR 0.49 TCGA-BA-4078-01 19 58549383 58549383 G C ZSCAN1 Missense_Mutation p.W60S 0.52 tolerated(0.19) possibly_damaging(0.639) TCGA-BA-4078-01 19 58868799 58868799 C A ZNF497 Missense_Mutation p.G68V 0.28 tolerated(0.31) benign(0.336) TCGA-BA-4078-01 19 6664993 6664993 G A TNFSF14 Missense_Mutation p.R223C 0.42 deleterious(0) possibly_damaging(0.901) TCGA-BA-4078-01 19 9007503 9007503 G T MUC16 Silent p.P13155P 0.31 TCGA-BA-4078-01 19 9026207 9026207 C A MUC16 Missense_Mutation p.S12260I 0.43 possibly_damaging(0.595) TCGA-BA-4078-01 19 9072003 9072003 G T MUC16 Missense_Mutation p.P5148H 0.43 unknown(0) TCGA-BA-4078-01 1 103496734 103496734 T C COL11A1 Missense_Mutation p.S240G 0.34 probably_damaging(0.952) TCGA-BA-4078-01 1 103496752 103496752 C T COL11A1 Missense_Mutation p.D234N 0.33 probably_damaging(0.997) TCGA-BA-4078-01 1 103548502 103548502 G A COL11A1 Silent p.L45L 0.37 TCGA-BA-4078-01 1 110032945 110032945 G A ATXN7L2 Missense_Mutation p.R430H 0.46 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 1 113652911 113652911 G T LRIG2 Missense_Mutation p.A509S 0.36 tolerated(0.08) possibly_damaging(0.816) TCGA-BA-4078-01 1 115231345 115231345 G T AMPD1 Missense_Mutation p.R51S 0.32 deleterious(0) probably_damaging(0.922) TCGA-BA-4078-01 1 12806363 12806363 G A C1orf158 5'UTR 0.80 TCGA-BA-4078-01 1 142803593 142803593 T A RP11-423O2.5 RNA 0.04 TCGA-BA-4078-01 1 152280766 152280766 G T FLG Nonsense_Mutation p.S2199* 0.41 TCGA-BA-4078-01 1 158389859 158389859 G A OR10K2 Silent p.Y266Y 0.87 TCGA-BA-4078-01 1 161018684 161018684 A G ARHGAP30 Silent p.S709S 0.43 TCGA-BA-4078-01 1 167024302 167024302 A T GPA33 Silent p.V246V 0.85 TCGA-BA-4078-01 1 167408592 167408592 G A CD247 Nonsense_Mutation p.Q70* 0.34 TCGA-BA-4078-01 1 169580850 169580850 C G SELP Missense_Mutation p.A343P 0.84 tolerated(0.27) benign(0.017) TCGA-BA-4078-01 1 171070915 171070915 C A FMO3 Intron 0.84 TCGA-BA-4078-01 1 192778183 192778183 C T RGS2 5'UTR 0.76 TCGA-BA-4078-01 1 196285139 196285139 C G KCNT2 Missense_Mutation p.R789T 0.79 deleterious(0.03) benign(0.159) TCGA-BA-4078-01 1 197031010 197031010 C A F13B Missense_Mutation p.A119S 0.71 tolerated(0.76) benign(0.062) TCGA-BA-4078-01 1 207871016 207871016 G C CR1L Missense_Mutation p.R344T 0.82 tolerated(0.4) benign(0.012) TCGA-BA-4078-01 1 214819347 214819347 G A CENPF Missense_Mutation p.R2145H 0.87 benign(0.401) TCGA-BA-4078-01 1 216850746 216850746 G A ESRRG Silent p.S53S 0.80 TCGA-BA-4078-01 1 22304901 22304901 G T CELA3B Missense_Mutation p.R28L 0.64 deleterious(0) possibly_damaging(0.768) TCGA-BA-4078-01 1 22307604 22307604 C A CELA3B Missense_Mutation p.P101T 0.69 tolerated(0.19) benign(0.296) TCGA-BA-4078-01 1 223568029 223568029 C G C1orf65 Silent p.A404A 0.88 TCGA-BA-4078-01 1 226549218 226549218 C T PARP1 Silent p.Q996Q 0.90 TCGA-BA-4078-01 1 230827172 230827172 G A COG2 Silent p.K659K 0.90 TCGA-BA-4078-01 1 23520767 23520767 G A HTR1D 5'UTR 0.74 TCGA-BA-4078-01 1 235345469 235345469 T G ARID4B Missense_Mutation p.K922T 0.85 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BA-4078-01 1 237670115 237670115 G T RYR2 Splice_Site p.X906_splice 0.41 TCGA-BA-4078-01 1 237711878 237711878 T A RYR2 Nonsense_Mutation p.Y1018* 0.76 TCGA-BA-4078-01 1 237711879 237711879 G T RYR2 Missense_Mutation p.G1019C 0.77 probably_damaging(0.997) TCGA-BA-4078-01 1 237778123 237778123 C T RYR2 Missense_Mutation p.P1899S 0.87 probably_damaging(0.997) TCGA-BA-4078-01 1 241761198 241761198 C T OPN3 Silent p.L265L 0.82 TCGA-BA-4078-01 1 248458280 248458280 A T OR2T12 Missense_Mutation p.C201S 0.79 deleterious(0.01) probably_damaging(0.993) TCGA-BA-4078-01 1 248685252 248685252 A T OR2G6 Missense_Mutation p.Y102F 0.88 tolerated(0.49) possibly_damaging(0.452) TCGA-BA-4078-01 1 248737626 248737626 C G OR2T34 Missense_Mutation p.V145L 0.77 tolerated(0.31) benign(0.27) TCGA-BA-4078-01 1 248845040 248845040 T A OR14I1 Missense_Mutation p.E189V 0.81 deleterious(0.03) possibly_damaging(0.555) TCGA-BA-4078-01 1 32833873 32833873 C A BSDC1 Intron 0.50 TCGA-BA-4078-01 1 32833874 32833874 C A BSDC1 Intron 0.50 TCGA-BA-4078-01 1 33237516 33237516 G A KIAA1522 Silent p.L912L 0.42 TCGA-BA-4078-01 1 35578906 35578906 G A ZMYM1 Missense_Mutation p.R492K 0.34 tolerated(0.48) benign(0.145) TCGA-BA-4078-01 1 38039946 38039946 G - GNL2 Frame_Shift_Del p.Q472Sfs*140 0.34 TCGA-BA-4078-01 1 38158353 38158353 G T CDCA8 5'UTR 0.40 TCGA-BA-4078-01 1 43308691 43308691 A G ERMAP Missense_Mutation p.T406A 0.35 tolerated(0.4) benign(0.014) TCGA-BA-4078-01 1 45472642 45472642 T A HECTD3 Silent p.A534A 0.39 TCGA-BA-4078-01 1 47407066 47407066 C A CYP4A11 Missense_Mutation p.D14Y 0.35 tolerated(0.18) benign(0.285) TCGA-BA-4078-01 1 47609432 47609432 A C CYP4A22 Splice_Site p.X212_splice 0.42 TCGA-BA-4078-01 1 50659494 50659494 G A ELAVL4 Missense_Mutation p.G155S 0.42 deleterious(0.02) possibly_damaging(0.741) TCGA-BA-4078-01 1 57425761 57425761 T A C8B Missense_Mutation p.M61L 0.41 tolerated(0.29) benign(0.002) TCGA-BA-4078-01 1 64117492 64117492 A T PGM1 Missense_Mutation p.D496V 0.28 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 1 6635220 6635220 G A TAS1R1 Missense_Mutation p.R343Q 0.10 tolerated(0.7) benign(0.009) TCGA-BA-4078-01 1 67155877 67155877 G T SGIP1 Missense_Mutation p.R483I 0.34 deleterious(0) probably_damaging(0.944) TCGA-BA-4078-01 1 70385459 70385459 C T LRRC7 Intron 0.19 TCGA-BA-4078-01 1 70904905 70904905 A T CTH 3'UTR 0.42 TCGA-BA-4078-01 1 75037355 75037355 C A C1orf173 Missense_Mutation p.G1347C 0.42 deleterious(0.01) possibly_damaging(0.77) TCGA-BA-4078-01 1 82409022 82409022 A G LPHN2 Missense_Mutation p.Y256C 0.40 deleterious(0) probably_damaging(0.993) TCGA-BA-4078-01 1 82445578 82445578 C A LPHN2 Missense_Mutation p.T999K 0.34 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 1 99387542 99387542 A C LPPR5 Missense_Mutation p.C232G 0.45 deleterious(0.04) benign(0.103) TCGA-BA-4078-01 20 16486697 16486697 C A KIF16B Missense_Mutation p.V280L 0.17 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 20 20177362 20177362 G T C20orf26 Missense_Mutation p.R580L 0.39 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 20 21376612 21376612 C T NKX2-4 Silent p.A334A 0.61 TCGA-BA-4078-01 20 21687579 21687579 G T PAX1 Missense_Mutation p.G264C 0.51 deleterious(0) probably_damaging(0.96) TCGA-BA-4078-01 20 23016732 23016732 C A SSTR4 Missense_Mutation p.H204Q 0.25 tolerated(0.09) benign(0.281) TCGA-BA-4078-01 20 23966370 23966370 C T GGTLC1 Silent p.V155V 0.55 TCGA-BA-4078-01 20 25059329 25059329 C T VSX1 Intron 0.62 TCGA-BA-4078-01 20 34092279 34092279 G A CEP250 Missense_Mutation p.D2028N 0.15 benign(0.02) TCGA-BA-4078-01 20 35060934 35060934 G A DLGAP4 Missense_Mutation p.A272T 0.32 tolerated(0.38) benign(0.072) TCGA-BA-4078-01 20 36775222 36775222 C A TGM2 Missense_Mutation p.M252I 0.54 tolerated(0.07) benign(0.128) TCGA-BA-4078-01 20 37395021 37395021 G A ACTR5 Splice_Site p.X478_splice 0.72 TCGA-BA-4078-01 20 61833966 61833966 C A YTHDF1 Silent p.G442G 0.68 TCGA-BA-4078-01 20 870932 870932 G C ANGPT4 Missense_Mutation p.P130R 0.34 deleterious(0) benign(0.223) TCGA-BA-4078-01 21 10973766 10973766 T A TPTE 5'UTR 0.30 TCGA-BA-4078-01 21 11058319 11058319 C T BAGE2 RNA 0.09 TCGA-BA-4078-01 21 14417547 14417547 C G RNU6-614P 5'Flank 0.35 TCGA-BA-4078-01 21 35743238 35743238 G C KCNE2 3'UTR 0.43 TCGA-BA-4078-01 21 46032693 46032693 C T KRTAP10-8 Missense_Mutation p.P226S 0.44 tolerated(1) unknown(0) TCGA-BA-4078-01 22 22681963 22681963 G T IGLV1-50 Missense_Mutation p.G49W 0.88 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-BA-4078-01 22 25627780 25627781 - A CRYBB2 3'UTR 0.58 TCGA-BA-4078-01 22 36537812 36537812 C A APOL3 Silent p.T215T 0.34 TCGA-BA-4078-01 22 36541544 36541544 G A APOL3 Silent p.F109F 0.31 TCGA-BA-4078-01 22 36960346 36960346 C T CACNG2 3'UTR 0.89 TCGA-BA-4078-01 22 37584249 37584249 T C C1QTNF6 Missense_Mutation p.Q2R 0.87 tolerated_low_confidence(0.32) benign(0.001) TCGA-BA-4078-01 2 100625330 100625330 G T AFF3 Missense_Mutation p.Q65K 0.38 deleterious(0.01) probably_damaging(0.986) TCGA-BA-4078-01 2 107042508 107042508 G T RGPD3 Nonsense_Mutation p.S881* 0.18 TCGA-BA-4078-01 2 11802345 11802345 C A NTSR2 Missense_Mutation p.V216L 0.39 tolerated(0.07) benign(0.111) TCGA-BA-4078-01 2 120413946 120413946 A G PCDP1 Missense_Mutation p.K808R 0.37 tolerated(0.17) benign(0.009) TCGA-BA-4078-01 2 131797883 131797883 A T ARHGEF4 Missense_Mutation p.Q325L 0.34 tolerated(0.07) probably_damaging(0.967) TCGA-BA-4078-01 2 135878405 135878405 C T RAB3GAP1 Missense_Mutation p.P222L 0.38 deleterious(0) possibly_damaging(0.517) TCGA-BA-4078-01 2 141460022 141460022 G A LRP1B Missense_Mutation p.P2042S 0.30 possibly_damaging(0.876) TCGA-BA-4078-01 2 145147422 145147422 A G ZEB2 Missense_Mutation p.C1081R 0.40 deleterious(0) possibly_damaging(0.724) TCGA-BA-4078-01 2 149240960 149240960 C G MBD5 Missense_Mutation p.L934V 0.34 tolerated(0.12) unknown(0) TCGA-BA-4078-01 2 162273105 162273105 C G TBR1 Missense_Mutation p.Q62E 0.42 tolerated(1) possibly_damaging(0.585) TCGA-BA-4078-01 2 170062967 170062967 G A LRP2 Silent p.V2421V 0.41 TCGA-BA-4078-01 2 176995440 176995440 C A HOXD8 Missense_Mutation p.P116T 0.44 tolerated(0.38) possibly_damaging(0.908) TCGA-BA-4078-01 2 177016671 177016671 C - HOXD4 Frame_Shift_Del p.P104Rfs*34 0.29 TCGA-BA-4078-01 2 179427269 179427269 G A TTN Missense_Mutation p.P27864S 0.40 TCGA-BA-4078-01 2 179470333 179470333 A G TTN Missense_Mutation p.Y17897H 0.36 TCGA-BA-4078-01 2 179583155 179583155 G T TTN Silent p.T8226T 0.44 TCGA-BA-4078-01 2 187703843 187703844 - C ZSWIM2 Frame_Shift_Ins p.I113Dfs*13 0.34 TCGA-BA-4078-01 2 191064816 191064816 G A C2orf88 Nonsense_Mutation p.W77* 0.37 TCGA-BA-4078-01 2 196659124 196659124 T A DNAH7 Missense_Mutation p.I3552F 0.42 deleterious(0.03) possibly_damaging(0.616) TCGA-BA-4078-01 2 198413136 198413136 G T HSPE1-MOB4 Missense_Mutation p.S180I 0.38 deleterious(0.02) probably_damaging(0.991) TCGA-BA-4078-01 2 212288906 212288906 A G ERBB4 Missense_Mutation p.I947T 0.40 deleterious(0.02) possibly_damaging(0.858) TCGA-BA-4078-01 2 21242655 21242655 G A APOB Missense_Mutation p.A980V 0.48 probably_damaging(0.998) TCGA-BA-4078-01 2 219267845 219267845 G A CTDSP1 Missense_Mutation p.A156T 0.41 deleterious(0) benign(0.406) TCGA-BA-4078-01 2 224765920 224765920 C T WDFY1 Silent p.T155T 0.39 TCGA-BA-4078-01 2 227985813 227985813 G A COL4A4 Missense_Mutation p.P82S 0.45 possibly_damaging(0.618) TCGA-BA-4078-01 2 233198642 233198642 G A DIS3L2 Silent p.S701S 0.36 TCGA-BA-4078-01 2 233394727 233394727 G T CHRND Missense_Mutation p.R233L 0.35 tolerated(0.19) benign(0.112) TCGA-BA-4078-01 2 233839522 233839522 G T NGEF Missense_Mutation p.P27T 0.39 tolerated_low_confidence(0.21) benign(0.007) TCGA-BA-4078-01 2 234904971 234904971 T G TRPM8 Missense_Mutation p.Y981D 0.38 deleterious(0) probably_damaging(0.957) TCGA-BA-4078-01 2 237074503 237074503 C T GBX2 3'UTR 0.57 TCGA-BA-4078-01 2 238275541 238275541 G T COL6A3 Missense_Mutation p.S1763R 0.45 probably_damaging(0.988) TCGA-BA-4078-01 2 238283363 238283363 G C COL6A3 Missense_Mutation p.A1124G 0.39 probably_damaging(0.932) TCGA-BA-4078-01 2 241533429 241533429 G T CAPN10 Missense_Mutation p.W265C 0.42 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 2 43519319 43519319 G A THADA Missense_Mutation p.P1621S 0.43 tolerated(0.06) benign(0.031) TCGA-BA-4078-01 2 56602977 56602977 T A CCDC85A Silent p.A493A 0.47 TCGA-BA-4078-01 2 71189914 71189914 C G ATP6V1B1 Missense_Mutation p.R265G 0.29 deleterious(0) probably_damaging(0.998) TCGA-BA-4078-01 2 71429712 71429712 C A PAIP2B Missense_Mutation p.G3V 0.46 deleterious(0.04) benign(0.058) TCGA-BA-4078-01 2 76975779 76975779 C A LRRTM4 3'UTR 0.46 TCGA-BA-4078-01 2 79348763 79348763 G T REG1A Missense_Mutation p.C47F 0.40 deleterious(0.02) possibly_damaging(0.695) TCGA-BA-4078-01 2 80136777 80136777 G T CTNNA2 Nonsense_Mutation p.E304* 0.37 TCGA-BA-4078-01 2 80530966 80530966 G A LRRTM1 5'UTR 0.49 TCGA-BA-4078-01 2 85829067 85829067 G T TMEM150A Missense_Mutation p.T2N 0.39 deleterious(0.04) probably_damaging(0.997) TCGA-BA-4078-01 2 90122132 90122132 C A IGKV1D-17 Missense_Mutation p.P117H 0.34 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 2 90249164 90249164 A G IGKV1D-43 Silent p.R40R 0.39 TCGA-BA-4078-01 2 96458199 96458199 G T AC008268.2 RNA 0.20 TCGA-BA-4078-01 3 100349615 100349615 G T GPR128 Missense_Mutation p.G99V 0.45 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 3 100373869 100373869 C A GPR128 Missense_Mutation p.P524T 0.42 tolerated(0.11) possibly_damaging(0.624) TCGA-BA-4078-01 3 101477063 101477063 C G CEP97 Missense_Mutation p.P538R 0.19 tolerated(0.08) benign(0.14) TCGA-BA-4078-01 3 108159997 108159997 C T MYH15 Silent p.E942E 0.24 TCGA-BA-4078-01 3 113346698 113346698 G T SIDT1 3'UTR 0.42 TCGA-BA-4078-01 3 130188184 130188184 G T COL6A5 Missense_Mutation p.G2446C 0.18 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 3 138014753 138014753 C A ARMC8 3'UTR 0.18 TCGA-BA-4078-01 3 138091710 138091710 C G MRAS Intron 0.23 TCGA-BA-4078-01 3 1445164 1445164 C G CNTN6 3'UTR 0.60 TCGA-BA-4078-01 3 146309588 146309588 G T PLSCR5 Silent p.I178I 0.69 TCGA-BA-4078-01 3 146323124 146323124 G C PLSCR5 5'UTR 0.33 TCGA-BA-4078-01 3 147128064 147128064 G C ZIC1 Missense_Mutation p.E55D 0.64 tolerated(1) benign(0.002) TCGA-BA-4078-01 3 150400034 150400034 C A FAM194A Missense_Mutation p.V285L 0.42 tolerated(0.52) benign(0.009) TCGA-BA-4078-01 3 154146445 154146445 G T GPR149 Silent p.V320V 0.42 TCGA-BA-4078-01 3 167437849 167437849 C T PDCD10 Splice_Site p.X32_splice 0.22 TCGA-BA-4078-01 3 17056221 17056221 G A PLCL2 Missense_Mutation p.E820K 0.79 deleterious(0) probably_damaging(0.977) TCGA-BA-4078-01 3 179472519 179472519 G T USP13 Splice_Site p.X600_splice 0.23 TCGA-BA-4078-01 3 179519503 179519503 C G PEX5L 3'UTR 0.15 TCGA-BA-4078-01 3 184675175 184675175 G T VPS8 Missense_Mutation p.V1017L 0.13 tolerated(0.73) benign(0) TCGA-BA-4078-01 3 191078925 191078925 C T CCDC50 Missense_Mutation p.R103C 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-BA-4078-01 3 194063363 194063363 G T CPN2 Silent p.P23P 0.72 TCGA-BA-4078-01 3 196098827 196098827 G A UBXN7 Silent p.R185R 0.21 TCGA-BA-4078-01 3 27763724 27763724 G T EOMES Missense_Mutation p.P21Q 0.67 deleterious_low_confidence(0.04) benign(0.068) TCGA-BA-4078-01 3 3886403 3886403 C A LRRN1 Silent p.S26S 0.75 TCGA-BA-4078-01 3 43474181 43474181 G - ANO10 Frame_Shift_Del p.I613Yfs*10 0.43 TCGA-BA-4078-01 3 49161040 49161040 C T LAMB2 Silent p.E1274E 0.74 TCGA-BA-4078-01 3 49755619 49755619 T G AMIGO3 Missense_Mutation p.Q427P 0.73 deleterious(0.05) benign(0.333) TCGA-BA-4078-01 3 50421637 50421637 G A CACNA2D2 Silent p.I214I 0.77 TCGA-BA-4078-01 3 71247394 71247394 C A FOXP1 Missense_Mutation p.G47W 0.67 deleterious_low_confidence(0) probably_damaging(1) TCGA-BA-4078-01 3 73433465 73433465 T C PDZRN3 Missense_Mutation p.D751G 0.69 deleterious(0) probably_damaging(0.971) TCGA-BA-4078-01 3 75679914 75679914 C A MIR1324 RNA 0.12 TCGA-BA-4078-01 3 77666777 77666777 G A ROBO2 Missense_Mutation p.G1152D 0.80 deleterious(0) probably_damaging(0.931) TCGA-BA-4078-01 3 88104575 88104575 C G CGGBP1 3'UTR 0.64 TCGA-BA-4078-01 3 89521722 89521722 G T EPHA3 Silent p.T933T 0.70 TCGA-BA-4078-01 3 93783304 93783304 G T NSUN3 Missense_Mutation p.K12N 0.21 deleterious(0.04) benign(0.013) TCGA-BA-4078-01 3 93783306 93783306 T A NSUN3 Missense_Mutation p.L13H 0.21 tolerated(0.55) benign(0.015) TCGA-BA-4078-01 3 96706794 96706794 C T EPHA6 Silent p.C357C 0.22 TCGA-BA-4078-01 3 99567165 99567165 G A FILIP1L Missense_Mutation p.P1119S 0.22 tolerated(0.27) benign(0.063) TCGA-BA-4078-01 4 123207877 123207877 A G KIAA1109 Missense_Mutation p.I3073M 0.74 benign(0.018) TCGA-BA-4078-01 4 123868598 123868598 C T SPATA5 Missense_Mutation p.H557Y 0.74 deleterious(0.04) possibly_damaging(0.891) TCGA-BA-4078-01 4 155507095 155507095 C A FGA Missense_Mutation p.D496Y 0.73 deleterious(0.01) probably_damaging(0.986) TCGA-BA-4078-01 4 156632328 156632328 G T GUCY1A3 Silent p.G337G 0.70 TCGA-BA-4078-01 4 156752976 156752976 C A ASIC5 Missense_Mutation p.A443S 0.67 tolerated(0.47) benign(0.062) TCGA-BA-4078-01 4 156764923 156764923 G C ASIC5 Missense_Mutation p.I257M 0.68 deleterious(0) probably_damaging(0.977) TCGA-BA-4078-01 4 157684171 157684171 G A PDGFC 3'UTR 0.66 TCGA-BA-4078-01 4 158262467 158262467 C T GRIA2 Silent p.I632I 0.73 TCGA-BA-4078-01 4 159956251 159956251 C G C4orf45 5'UTR 0.79 TCGA-BA-4078-01 4 175896743 175896743 G T ADAM29 Nonsense_Mutation p.E23* 0.74 TCGA-BA-4078-01 4 187630465 187630465 C G FAT1 Missense_Mutation p.A173P 0.79 probably_damaging(1) TCGA-BA-4078-01 4 188924029 188924029 G T ZFP42 Missense_Mutation p.S23I 0.77 tolerated(0.21) benign(0.002) TCGA-BA-4078-01 4 20543121 20543121 G T SLIT2 Missense_Mutation p.W674C 0.82 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 4 20555507 20555507 C T SLIT2 Missense_Mutation p.P881S 0.89 deleterious(0.02) probably_damaging(0.999) TCGA-BA-4078-01 4 46252334 46252334 G A GABRA2 Silent p.V449V 0.76 TCGA-BA-4078-01 4 46930523 46930523 C G GABRA4 Missense_Mutation p.G462R 0.78 tolerated_low_confidence(0.2) possibly_damaging(0.781) TCGA-BA-4078-01 4 55604751 55604751 C A KIT 3'UTR 0.68 TCGA-BA-4078-01 4 69978432 69978432 C A UGT2B7 Missense_Mutation p.A523E 0.65 tolerated(0.19) benign(0.003) TCGA-BA-4078-01 4 70352383 70352383 T A UGT2B4 Missense_Mutation p.D345V 0.70 deleterious(0.02) benign(0.37) TCGA-BA-4078-01 5 11346684 11346684 G T CTNND2 Missense_Mutation p.H476Q 0.30 tolerated(0.14) benign(0.031) TCGA-BA-4078-01 5 129520379 129520379 G T CHSY3 Missense_Mutation p.R515L 0.75 deleterious(0) probably_damaging(0.992) TCGA-BA-4078-01 5 133481891 133481891 G T TCF7 Intron 0.74 TCGA-BA-4078-01 5 13752361 13752361 A G DNAH5 Missense_Mutation p.L3637P 0.31 probably_damaging(0.928) TCGA-BA-4078-01 5 13841950 13841950 C G DNAH5 Missense_Mutation p.V1779L 0.20 benign(0.299) TCGA-BA-4078-01 5 13894843 13894843 C A DNAH5 Nonsense_Mutation p.E783* 0.31 TCGA-BA-4078-01 5 140242307 140242307 G T AC005609.1 3'UTR 0.72 TCGA-BA-4078-01 5 140723683 140723683 C G PCDHGA3 Missense_Mutation p.S28C 0.73 tolerated_low_confidence(0.15) benign(0.07) TCGA-BA-4078-01 5 150924598 150924598 C T FAT2 Silent p.R2030R 0.75 TCGA-BA-4078-01 5 15936859 15936859 A T FBXL7 Missense_Mutation p.K347M 0.66 deleterious(0) possibly_damaging(0.459) TCGA-BA-4078-01 5 159680601 159680601 G A CCNJL Silent p.H364H 0.73 TCGA-BA-4078-01 5 160115002 160115002 G A ATP10B Missense_Mutation p.T27I 0.68 tolerated(0.11) benign(0.002) TCGA-BA-4078-01 5 175956289 175956289 C A RNF44 Missense_Mutation p.K412N 0.70 deleterious(0.01) possibly_damaging(0.696) TCGA-BA-4078-01 5 23526959 23526959 G C PRDM9 Missense_Mutation p.G588R 0.22 tolerated(0.06) probably_damaging(1) TCGA-BA-4078-01 5 24505268 24505268 C A CDH10 Missense_Mutation p.R449L 0.22 deleterious(0) probably_damaging(0.982) TCGA-BA-4078-01 5 2755285 2755285 G C C5orf38 3'UTR 0.37 TCGA-BA-4078-01 5 31983279 31983279 C T PDZD2 Silent p.C165C 0.24 TCGA-BA-4078-01 5 32420208 32420208 G T ZFR Missense_Mutation p.S46R 0.23 deleterious(0) probably_damaging(0.944) TCGA-BA-4078-01 5 33588885 33588885 G T ADAMTS12 Nonsense_Mutation p.S895* 0.27 TCGA-BA-4078-01 5 37064663 37064663 C T NIPBL Missense_Mutation p.T2695M 0.31 deleterious_low_confidence(0.01) benign(0.386) TCGA-BA-4078-01 5 41313615 41313615 C A PLCXD3 3'UTR 0.33 TCGA-BA-4078-01 5 43502545 43502545 C A C5orf34 Missense_Mutation p.V361F 0.26 tolerated(0.51) possibly_damaging(0.871) TCGA-BA-4078-01 5 50128662 50128662 A G PARP8 Missense_Mutation p.S761G 0.79 tolerated(0.36) benign(0) TCGA-BA-4078-01 5 89938711 89938711 G T GPR98 Missense_Mutation p.R802S 0.77 possibly_damaging(0.587) TCGA-BA-4078-01 5 9052125 9052125 C T SEMA5A Nonsense_Mutation p.W902* 0.24 TCGA-BA-4078-01 6 105406115 105406115 G A LIN28B Missense_Mutation p.R51Q 0.39 tolerated(0.05) possibly_damaging(0.7) TCGA-BA-4078-01 6 10899058 10899058 T C SYCP2L Missense_Mutation p.I148T 0.75 deleterious(0) possibly_damaging(0.904) TCGA-BA-4078-01 6 110714170 110714170 C T DDO Silent p.R306R 0.38 TCGA-BA-4078-01 6 112443312 112443312 G A LAMA4 Silent p.S1460S 0.41 TCGA-BA-4078-01 6 119338048 119338048 T C FAM184A Missense_Mutation p.Q465R 0.39 tolerated(1) benign(0.008) TCGA-BA-4078-01 6 128040968 128040968 G T THEMIS Missense_Mutation p.R626S 0.47 tolerated_low_confidence(0.58) benign(0) TCGA-BA-4078-01 6 129775417 129775417 C A LAMA2 Missense_Mutation p.R2231S 0.51 tolerated(0.35) probably_damaging(0.99) TCGA-BA-4078-01 6 130465774 130465774 G T SAMD3 Missense_Mutation p.S485Y 0.38 tolerated(1) benign(0.002) TCGA-BA-4078-01 6 130762115 130762115 G T TMEM200A Missense_Mutation p.G183V 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-BA-4078-01 6 139576740 139576740 C T TXLNB Silent p.A346A 0.43 TCGA-BA-4078-01 6 153043144 153043144 C G MYCT1 Missense_Mutation p.S155C 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-BA-4078-01 6 159052421 159052421 G T TMEM181 Missense_Mutation p.G587V 0.39 deleterious(0) probably_damaging(0.984) TCGA-BA-4078-01 6 161173182 161173182 C A PLG Missense_Mutation p.L721I 0.43 tolerated(0.14) possibly_damaging(0.499) TCGA-BA-4078-01 6 165832247 165832247 C A PDE10A Missense_Mutation p.V292L 0.34 deleterious(0.03) benign(0.162) TCGA-BA-4078-01 6 25420376 25420376 C T LRRC16A Missense_Mutation p.A58V 0.03 tolerated(0.5) benign(0.386) TCGA-BA-4078-01 6 25830801 25830801 C G SLC17A1 5'UTR 0.44 TCGA-BA-4078-01 6 26107832 26107832 C G HIST1H1T Missense_Mutation p.V164L 0.41 tolerated(0.08) benign(0) TCGA-BA-4078-01 6 28876602 28876602 T A TRIM27 Missense_Mutation p.D301V 0.69 tolerated(0.12) benign(0.023) TCGA-BA-4078-01 6 29407961 29407961 C A OR10C1 Missense_Mutation p.P57T 0.70 deleterious(0) probably_damaging(0.997) TCGA-BA-4078-01 6 33283758 33283758 C A ZBTB22 Silent p.L312L 0.33 TCGA-BA-4078-01 6 33657174 33657175 - G ITPR3 Frame_Shift_Ins p.A2287Cfs*26 0.31 TCGA-BA-4078-01 6 38840416 38840416 C T DNAH8 Silent p.C2148C 0.39 TCGA-BA-4078-01 6 39272355 39272355 G C KCNK17 Silent p.L143L 0.35 TCGA-BA-4078-01 6 42637959 42637959 G T UBR2 Silent p.A1337A 0.42 TCGA-BA-4078-01 6 51890864 51890864 C T PKHD1 Nonsense_Mutation p.W1248* 0.43 TCGA-BA-4078-01 6 52762651 52762651 C T GSTA3 Missense_Mutation p.S173N 0.37 tolerated(0.18) benign(0.003) TCGA-BA-4078-01 6 55216213 55216213 T A GFRAL Missense_Mutation p.I178K 0.42 deleterious(0) benign(0.21) TCGA-BA-4078-01 6 55441888 55441888 A C HMGCLL1 Silent p.A62A 0.36 TCGA-BA-4078-01 6 617752 617752 C G EXOC2 Missense_Mutation p.G207A 0.50 tolerated(0.44) probably_damaging(0.981) TCGA-BA-4078-01 6 79679576 79679576 C A PHIP Missense_Mutation p.A1061S 0.33 tolerated(0.11) probably_damaging(0.985) TCGA-BA-4078-01 6 86235871 86235871 C T SNX14 Missense_Mutation p.D694N 0.33 deleterious(0.03) possibly_damaging(0.597) TCGA-BA-4078-01 6 87928449 87928449 G C ZNF292 Missense_Mutation p.V180L 0.43 deleterious(0) benign(0.289) TCGA-BA-4078-01 6 90604608 90604608 C T GJA10 Nonsense_Mutation p.Q141* 0.41 TCGA-BA-4078-01 7 100551579 100551579 T C MUC3A Silent p.I110I 0.31 TCGA-BA-4078-01 7 100677017 100677017 A T MUC17 Missense_Mutation p.T774S 0.42 unknown(0) TCGA-BA-4078-01 7 100685698 100685698 C A MUC17 Silent p.I3667I 0.38 TCGA-BA-4078-01 7 101837129 101837129 A T CUX1 Nonsense_Mutation p.K373* 0.47 TCGA-BA-4078-01 7 103234159 103234159 G T RELN Silent p.T1294T 0.34 TCGA-BA-4078-01 7 106800042 106800042 G C PRKAR2B 3'UTR 0.42 TCGA-BA-4078-01 7 107115363 107115363 T A GPR22 Silent p.T286T 0.50 TCGA-BA-4078-01 7 113519932 113519932 T C PPP1R3A Silent p.S405S 0.48 TCGA-BA-4078-01 7 116164934 116164934 A T CAV1 5'UTR 0.46 TCGA-BA-4078-01 7 120629907 120629907 G A CPED1 Missense_Mutation p.A78T 0.37 tolerated(0.19) benign(0.007) TCGA-BA-4078-01 7 128488080 128488080 A G FLNC Missense_Mutation p.Y1513C 0.48 tolerated(0.08) probably_damaging(0.98) TCGA-BA-4078-01 7 130353673 130353673 C A TSGA13 3'UTR 0.49 TCGA-BA-4078-01 7 131853075 131853075 A T PLXNA4 Missense_Mutation p.L1425Q 0.41 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 7 131913220 131913220 C A PLXNA4 Missense_Mutation p.R538L 0.43 tolerated(0.58) probably_damaging(0.994) TCGA-BA-4078-01 7 134893687 134893687 C T WDR91 Missense_Mutation p.A123T 0.37 tolerated(0.09) benign(0.022) TCGA-BA-4078-01 7 137773407 137773407 A G AKR1D1 Missense_Mutation p.I52V 0.43 tolerated(0.06) benign(0.004) TCGA-BA-4078-01 7 141424933 141424933 C A WEE2 Silent p.I443I 0.41 TCGA-BA-4078-01 7 141803074 141803074 G A MGAM Silent p.T1777T 0.52 TCGA-BA-4078-01 7 141952004 141952004 G T PRSS58 3'UTR 0.37 TCGA-BA-4078-01 7 143633169 143633169 A T OR2F2 Missense_Mutation p.M282L 0.44 deleterious(0.01) benign(0.002) TCGA-BA-4078-01 7 143772005 143772005 G C OR2A25 Missense_Mutation p.E231D 0.38 deleterious(0.03) possibly_damaging(0.528) TCGA-BA-4078-01 7 146829578 146829578 T A CNTNAP2 Missense_Mutation p.M442K 0.41 tolerated(1) benign(0) TCGA-BA-4078-01 7 150837179 150837179 G A AGAP3 Missense_Mutation p.D594N 0.32 deleterious(0.05) probably_damaging(0.991) TCGA-BA-4078-01 7 150878289 150878289 G A ASB10 Missense_Mutation p.L281F 0.39 deleterious(0) probably_damaging(0.971) TCGA-BA-4078-01 7 157985038 157985038 T C PTPRN2 Missense_Mutation p.Q177R 0.43 tolerated(0.48) benign(0.016) TCGA-BA-4078-01 7 21730396 21730396 G T DNAH11 Missense_Mutation p.G1987W 0.40 probably_damaging(0.999) TCGA-BA-4078-01 7 24856232 24856232 G A OSBPL3 Missense_Mutation p.P675L 0.45 deleterious(0.02) benign(0.031) TCGA-BA-4078-01 7 28534558 28534558 G A CREB5 Missense_Mutation p.R37K 0.38 tolerated(1) probably_damaging(0.986) TCGA-BA-4078-01 7 30174858 30174858 G T MTURN Missense_Mutation p.D36Y 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-BA-4078-01 7 44608736 44608736 C A DDX56 Missense_Mutation p.R429L 0.43 deleterious(0) probably_damaging(0.98) TCGA-BA-4078-01 7 53103882 53103882 G T POM121L12 Missense_Mutation p.C173F 0.43 deleterious(0.01) possibly_damaging(0.781) TCGA-BA-4078-01 7 56066840 56066840 C G GBAS 3'UTR 0.48 TCGA-BA-4078-01 7 6441558 6441558 A C RAC1 Missense_Mutation p.K135N 0.49 deleterious(0) probably_damaging(0.972) TCGA-BA-4078-01 7 64439659 64439659 T G ZNF117 Missense_Mutation p.N97T 0.41 tolerated(0.08) possibly_damaging(0.507) TCGA-BA-4078-01 7 6639935 6639935 G T C7orf26 Silent p.L352L 0.32 TCGA-BA-4078-01 7 6639936 6639936 G T C7orf26 Missense_Mutation p.A353S 0.32 deleterious(0.01) possibly_damaging(0.567) TCGA-BA-4078-01 7 6863776 6863776 C A CCZ1B Nonsense_Mutation p.E112* 0.20 TCGA-BA-4078-01 7 71571224 71571224 C T CALN1 Silent p.K100K 0.42 TCGA-BA-4078-01 7 72209696 72209696 T G TYW1B Intron 0.41 TCGA-BA-4078-01 7 73521389 73521389 C T LIMK1 Missense_Mutation p.P311S 0.45 tolerated(0.1) benign(0.007) TCGA-BA-4078-01 7 81693670 81693670 C A CACNA2D1 Missense_Mutation p.W243C 0.34 deleterious(0.03) benign(0.258) TCGA-BA-4078-01 7 87329865 87329865 G A RUNDC3B Missense_Mutation p.A140T 0.34 deleterious(0) probably_damaging(0.991) TCGA-BA-4078-01 7 94879404 94879404 G T PPP1R9A Nonsense_Mutation p.E745* 0.35 TCGA-BA-4078-01 7 94928104 94928104 A T PON1 3'UTR 0.19 TCGA-BA-4078-01 7 95034735 95034735 C T PON2 Silent p.G324G 0.37 TCGA-BA-4078-01 7 97920509 97920509 C T BRI3 Missense_Mutation p.A111V 0.45 deleterious(0.02) probably_damaging(0.992) TCGA-BA-4078-01 8 100866327 100866327 G A VPS13B Silent p.L3595L 0.46 TCGA-BA-4078-01 8 105361622 105361622 C G DCSTAMP Missense_Mutation p.P281R 0.45 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 8 110425733 110425733 C T PKHD1L1 Silent p.S773S 0.64 TCGA-BA-4078-01 8 110474049 110474049 T A PKHD1L1 Missense_Mutation p.I2432K 0.40 deleterious(0.01) benign(0.13) TCGA-BA-4078-01 8 110984922 110984922 G T KCNV1 Missense_Mutation p.Q186K 0.38 tolerated(0.73) benign(0.014) TCGA-BA-4078-01 8 113277643 113277643 T C CSMD3 Missense_Mutation p.R3229G 0.41 deleterious(0.03) benign(0.002) TCGA-BA-4078-01 8 11418850 11418850 A G BLK Missense_Mutation p.I357V 0.49 tolerated(0.1) possibly_damaging(0.818) TCGA-BA-4078-01 8 120602744 120602744 C A ENPP2 Splice_Site p.X455_splice 0.41 TCGA-BA-4078-01 8 121240971 121240971 A T COL14A1 Silent p.P720P 0.39 TCGA-BA-4078-01 8 132971846 132971846 A G EFR3A Missense_Mutation p.H264R 0.35 deleterious(0.02) possibly_damaging(0.618) TCGA-BA-4078-01 8 133036669 133036669 G C OC90 3'UTR 0.42 TCGA-BA-4078-01 8 135612791 135612791 T C ZFAT Missense_Mutation p.H788R 0.38 deleterious(0) probably_damaging(0.985) TCGA-BA-4078-01 8 135817170 135817170 C A MIR30D RNA 0.41 TCGA-BA-4078-01 8 139180143 139180143 G T FAM135B Missense_Mutation p.A418E 0.44 tolerated(0.96) benign(0.009) TCGA-BA-4078-01 8 139638470 139638470 G T COL22A1 Missense_Mutation p.P1227H 0.28 unknown(0) TCGA-BA-4078-01 8 139642958 139642958 G A COL22A1 Missense_Mutation p.P1215S 0.42 unknown(0) TCGA-BA-4078-01 8 144877207 144877207 C A SCRIB Splice_Site p.X1282_splice 0.34 TCGA-BA-4078-01 8 145739431 145739431 G T RECQL4 Missense_Mutation p.R647S 0.44 tolerated(1) benign(0.001) TCGA-BA-4078-01 8 22442530 22442530 G A PDLIM2 Missense_Mutation p.G356S 0.41 deleterious(0.04) possibly_damaging(0.493) TCGA-BA-4078-01 8 26501563 26501563 A T DPYSL2 Missense_Mutation p.N356Y 0.38 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 8 35588529 35588529 G A UNC5D Splice_Site p.X561_splice 0.47 TCGA-BA-4078-01 8 39613295 39613295 G T ADAM2 Missense_Mutation p.D583E 0.39 tolerated(1) benign(0.006) TCGA-BA-4078-01 8 42294989 42294989 C A SLC20A2 Silent p.V347V 0.42 TCGA-BA-4078-01 8 55540694 55540694 G T RP1 Missense_Mutation p.D1418Y 0.35 deleterious(0.02) benign(0.05) TCGA-BA-4078-01 8 75233331 75233340 CCAGTAGCCC TCAG JPH1 Nonsense_Mutation p.Q61_W64delinsH* 0.32 TCGA-BA-4078-01 8 77618582 77618582 C A ZFHX4 Nonsense_Mutation p.C753* 0.50 TCGA-BA-4078-01 8 88363947 88363947 G T CNBD1 Silent p.V359V 0.36 TCGA-BA-4078-01 8 88363948 88363948 G T CNBD1 Missense_Mutation p.G360C 0.40 deleterious(0.01) probably_damaging(0.939) TCGA-BA-4078-01 8 92982970 92982970 C A RUNX1T1 Missense_Mutation p.K496N 0.41 deleterious(0) possibly_damaging(0.889) TCGA-BA-4078-01 9 107521703 107521703 A G NIPSNAP3A 3'UTR 0.33 TCGA-BA-4078-01 9 110086243 110086243 C T RAD23B Missense_Mutation p.S297F 0.41 deleterious(0) probably_damaging(0.968) TCGA-BA-4078-01 9 112898848 112898848 G T PALM2-AKAP2 Missense_Mutation p.A342S 0.45 tolerated(0.37) benign(0.346) TCGA-BA-4078-01 9 117050772 117050772 C A COL27A1 Missense_Mutation p.P1342H 0.38 unknown(0) TCGA-BA-4078-01 9 117793913 117793913 G T TNC Missense_Mutation p.P1947T 0.39 deleterious(0.01) probably_damaging(1) TCGA-BA-4078-01 9 120476539 120476539 C A TLR4 Missense_Mutation p.D711E 0.43 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 9 121930238 121930238 C T BRINP1 Silent p.R470R 0.30 TCGA-BA-4078-01 9 13196141 13196141 C T MPDZ Missense_Mutation p.M545I 0.79 deleterious(0.01) benign(0.135) TCGA-BA-4078-01 9 136380685 136380685 G A TMEM8C Silent p.S148S 0.41 TCGA-BA-4078-01 9 21968233 21968234 CG T CDKN2A 3'UTR 0.43 TCGA-BA-4078-01 9 23692524 23692524 C T ELAVL2 3'UTR 0.73 TCGA-BA-4078-01 9 35717418 35717418 C A TLN1 Missense_Mutation p.S728I 0.73 tolerated(0.11) probably_damaging(0.918) TCGA-BA-4078-01 9 40774556 40774556 T C ZNF658 Missense_Mutation p.E240G 0.46 tolerated(0.13) benign(0.001) TCGA-BA-4078-01 9 43630658 43630658 G A SPATA31A6 Missense_Mutation p.S15L 0.77 tolerated(0.26) benign(0.042) TCGA-BA-4078-01 9 43816732 43816732 C A CNTNAP3B Missense_Mutation p.L280I 0.26 tolerated(0.22) benign(0.166) TCGA-BA-4078-01 9 77257706 77257706 A G RORB Silent p.A204A 0.40 TCGA-BA-4078-01 9 90502556 90502556 A C SPATA31E1 Missense_Mutation p.S1052R 0.34 tolerated(0.11) possibly_damaging(0.55) TCGA-BA-4078-01 9 90503213 90503213 C A SPATA31E1 Missense_Mutation p.P1271T 0.27 tolerated(0.13) benign(0.002) TCGA-BA-4078-01 9 95050422 95050422 G T IARS Missense_Mutation p.H88N 0.47 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 9 95077690 95077690 G C NOL8 Missense_Mutation p.S406C 0.48 tolerated(0.14) possibly_damaging(0.598) TCGA-BA-4078-01 9 97055405 97055405 G T ZNF169 Intron 0.56 TCGA-BA-4078-01 9 99580614 99580614 C G ZNF782 Missense_Mutation p.C564S 0.38 deleterious(0) probably_damaging(0.982) TCGA-BA-4078-01 X 100117442 100117442 A G NOX1 Missense_Mutation p.F204L 0.82 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 X 102003885 102003885 G T BHLHB9 5'UTR 0.87 TCGA-BA-4078-01 X 104478565 104478565 G A IL1RAPL2 Silent p.L140L 0.80 TCGA-BA-4078-01 X 106843936 106843936 G A FRMPD3 Silent p.K922K 0.70 TCGA-BA-4078-01 X 122598930 122598930 A T GRIA3 Missense_Mutation p.Y764F 0.81 tolerated(0.35) probably_damaging(0.985) TCGA-BA-4078-01 X 135439903 135439903 A T GPR112 Missense_Mutation p.Y2323F 0.80 deleterious(0.03) benign(0.062) TCGA-BA-4078-01 X 1407468 1407468 C T CSF2RA Silent p.V92V 0.36 TCGA-BA-4078-01 X 142717687 142717687 A G SLITRK4 Missense_Mutation p.I413T 0.84 deleterious(0) benign(0.261) TCGA-BA-4078-01 X 142717956 142717957 - T SLITRK4 Frame_Shift_Ins p.N323Kfs*49 0.51 TCGA-BA-4078-01 X 144905948 144905948 T A SLITRK2 Missense_Mutation p.Y669N 0.85 tolerated(0.09) probably_damaging(0.973) TCGA-BA-4078-01 X 151514091 151514091 A G GABRA3 Missense_Mutation p.L75P 0.83 deleterious(0) probably_damaging(1) TCGA-BA-4078-01 X 151869846 151869846 C G MAGEA6 Missense_Mutation p.A179G 0.85 deleterious(0.03) benign(0.18) TCGA-BA-4078-01 X 155227375 155227375 G A IL9R 5'UTR 0.26 TCGA-BA-4078-01 X 20195158 20195159 CT - RPS6KA3 Frame_Shift_Del p.L298Ffs*21 0.52 TCGA-BA-4078-01 X 30260672 30260672 C T MAGEB4 Silent p.S140S 0.87 TCGA-BA-4078-01 X 31893375 31893375 C G DMD Missense_Mutation p.W2343S 0.74 benign(0.003) TCGA-BA-4078-01 X 37027498 37027498 G T FAM47C Missense_Mutation p.V339L 0.80 tolerated(0.38) probably_damaging(0.931) TCGA-BA-4078-01 X 38546928 38546928 G A TSPAN7 Intron 0.68 TCGA-BA-4078-01 X 48933527 48933527 C G WDR45 Missense_Mutation p.V173L 0.92 tolerated(0.08) benign(0.009) TCGA-BA-4078-01 X 49597193 49597193 G T PAGE4 Missense_Mutation p.G78C 0.84 deleterious(0) probably_damaging(0.963) TCGA-BA-4078-01 X 54359590 54359590 C A WNK3 Missense_Mutation p.V173F 0.79 deleterious(0) probably_damaging(0.999) TCGA-BA-4078-01 X 6069249 6069249 G T NLGN4X Silent p.R87R 0.82 TCGA-BA-4078-01 X 64959590 64959590 G T MSN Splice_Site p.X524_splice 0.79 TCGA-BA-4078-01 X 65824895 65824895 C T EDA2R Silent p.L87L 0.83 TCGA-BA-4078-01 X 73961161 73961161 A G KIAA2022 Silent p.P1077P 0.74 TCGA-BA-4078-01 X 83371245 83371245 C T RPS6KA6 Missense_Mutation p.D334N 0.94 tolerated(0.29) benign(0.125) TCGA-BA-4078-01 X 83616510 83616510 C G HDX Silent p.V472V 0.79 TCGA-BA-4078-01 X 84634342 84634342 G T POF1B Missense_Mutation p.Q40K 0.88 deleterious_low_confidence(0.02) benign(0.047) TCGA-BA-4078-01 X 85994839 85994839 T A DACH2 Missense_Mutation p.S398R 0.84 tolerated(0.06) benign(0.443) TCGA-BA-4078-01 Y 22930714 22930714 G A RPS4Y2 Silent p.K128K 0.84 TCGA-BA-5149-01 10 101480789 101480789 A G COX15 Missense_Mutation p.F263L 0.17 tolerated(0.74) benign(0.001) TCGA-BA-5149-01 10 117061476 117061476 G A ATRNL1 Missense_Mutation p.R914Q 0.15 tolerated(0.62) probably_damaging(0.968) TCGA-BA-5149-01 10 135083954 135083954 G C ADAM8 Missense_Mutation p.I565M 0.22 tolerated(0.08) benign(0.016) TCGA-BA-5149-01 10 29821795 29821795 G C SVIL Missense_Mutation p.Q501E 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-BA-5149-01 10 83635638 83635638 C A NRG3 Missense_Mutation p.S181Y 0.20 deleterious(0.01) possibly_damaging(0.748) TCGA-BA-5149-01 10 95111312 95111312 A T MYOF Nonsense_Mutation p.L1227* 0.22 TCGA-BA-5149-01 10 95111315 95111315 A T MYOF Missense_Mutation p.F1226Y 0.21 tolerated(0.16) benign(0.008) TCGA-BA-5149-01 11 33565011 33565017 CACCCAG - KIAA1549L Frame_Shift_Del p.T338Lfs*33 0.28 TCGA-BA-5149-01 11 3848803 3848803 A C RHOG Missense_Mutation p.I189S 0.20 tolerated_low_confidence(0.42) benign(0.021) TCGA-BA-5149-01 11 58892771 58892771 C G FAM111B Missense_Mutation p.Q401E 0.28 tolerated(0.09) benign(0.011) TCGA-BA-5149-01 11 61503242 61503242 A T DAGLA Missense_Mutation p.E415V 0.30 deleterious(0) probably_damaging(0.998) TCGA-BA-5149-01 11 64875963 64875963 C T VPS51 Silent p.F340F 0.22 TCGA-BA-5149-01 11 720157 720157 C G EPS8L2 Missense_Mutation p.I87M 0.15 deleterious(0) possibly_damaging(0.886) TCGA-BA-5149-01 11 92531604 92531604 G A FAT3 Missense_Mutation p.A1809T 0.20 probably_damaging(0.985) TCGA-BA-5149-01 11 92531605 92531605 C A FAT3 Missense_Mutation p.A1809D 0.21 probably_damaging(0.995) TCGA-BA-5149-01 12 120111774 120111774 A G PRKAB1 Missense_Mutation p.N110S 0.22 tolerated(0.1) possibly_damaging(0.64) TCGA-BA-5149-01 12 121686456 121686456 C G CAMKK2 Missense_Mutation p.E469Q 0.14 deleterious(0) probably_damaging(0.98) TCGA-BA-5149-01 12 49176910 49176910 G A ADCY6 Missense_Mutation p.T103M 0.21 tolerated(0.11) benign(0.031) TCGA-BA-5149-01 12 49434105 49434105 G C KMT2D Missense_Mutation p.S2483C 0.10 possibly_damaging(0.887) TCGA-BA-5149-01 12 81111152 81111152 G A MYF5 Missense_Mutation p.E104K 0.22 deleterious(0) benign(0.446) TCGA-BA-5149-01 12 81693145 81693145 C A PPFIA2 Nonsense_Mutation p.E887* 0.18 TCGA-BA-5149-01 12 89995159 89995159 T A ATP2B1 Missense_Mutation p.I1038L 0.22 tolerated(1) benign(0.001) TCGA-BA-5149-01 12 9222346 9222346 C T A2M Missense_Mutation p.D1420N 0.21 deleterious(0) possibly_damaging(0.693) TCGA-BA-5149-01 13 29599467 29599467 G T MTUS2 Missense_Mutation p.G221V 0.20 deleterious(0.03) benign(0.017) TCGA-BA-5149-01 13 38320380 38320380 G C TRPC4 Silent p.L197L 0.25 TCGA-BA-5149-01 13 78320898 78320898 C T SLAIN1 Missense_Mutation p.S225F 0.35 deleterious(0) unknown(0) TCGA-BA-5149-01 14 100187605 100187605 G A CYP46A1 Missense_Mutation p.G337D 0.19 deleterious(0) probably_damaging(0.999) TCGA-BA-5149-01 14 106368512 106368512 C T IGHD5-12 Silent p.T6T 0.21 TCGA-BA-5149-01 14 20296147 20296147 T A OR4N2 Missense_Mutation p.D180E 0.37 deleterious(0.01) probably_damaging(1) TCGA-BA-5149-01 14 73566382 73566382 T G RBM25 Missense_Mutation p.I264R 0.12 probably_damaging(0.992) TCGA-BA-5149-01 14 73973233 73973233 G T HEATR4 Missense_Mutation p.Q642K 0.16 deleterious(0.01) benign(0.437) TCGA-BA-5149-01 14 73973234 73973234 A T HEATR4 Nonsense_Mutation p.C641* 0.16 TCGA-BA-5149-01 15 22873316 22873316 G A TUBGCP5 3'UTR 0.18 TCGA-BA-5149-01 15 42113097 42113097 G A MAPKBP1 Missense_Mutation p.R856H 0.19 deleterious(0) probably_damaging(0.991) TCGA-BA-5149-01 15 49882141 49882141 T C FAM227B Missense_Mutation p.I57V 0.17 tolerated(0.09) benign(0.437) TCGA-BA-5149-01 15 65494259 65494259 C G CILP Missense_Mutation p.Q379H 0.20 tolerated(0.1) possibly_damaging(0.562) TCGA-BA-5149-01 16 18852958 18852958 C A SMG1 Missense_Mutation p.D2209Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-BA-5149-01 16 47189439 47189439 A G ITFG1 3'UTR 0.35 TCGA-BA-5149-01 16 4835848 4835848 C G SEPT12 Missense_Mutation p.D112H 0.21 deleterious(0) probably_damaging(0.996) TCGA-BA-5149-01 16 56996954 56996954 G T CETP Missense_Mutation p.A51S 0.15 deleterious(0.03) possibly_damaging(0.485) TCGA-BA-5149-01 16 88598565 88598565 C T ZFPM1 Missense_Mutation p.R290C 0.15 deleterious(0) probably_damaging(0.997) TCGA-BA-5149-01 16 89254553 89254553 C T CDH15 Missense_Mutation p.R280C 0.09 deleterious(0) probably_damaging(0.982) TCGA-BA-5149-01 16 89351208 89351208 G C ANKRD11 Missense_Mutation p.S581C 0.15 probably_damaging(0.971) TCGA-BA-5149-01 17 28645840 28645840 C T TMIGD1 Silent p.K244K 0.20 TCGA-BA-5149-01 17 32483260 32483260 G A ASIC2 Missense_Mutation p.R98W 0.22 deleterious(0) probably_damaging(1) TCGA-BA-5149-01 17 40761276 40761276 G A FAM134C Nonsense_Mutation p.R23* 0.62 TCGA-BA-5149-01 17 62793439 62793439 G A PLEKHM1P RNA 0.24 TCGA-BA-5149-01 17 63156694 63156694 A G RGS9 Missense_Mutation p.D118G 0.16 deleterious(0) possibly_damaging(0.778) TCGA-BA-5149-01 17 9820581 9820581 C G GAS7 Missense_Mutation p.K465N 0.20 tolerated(0.11) benign(0.017) TCGA-BA-5149-01 18 13885247 13885247 A T MC2R Missense_Mutation p.Y91N 0.16 tolerated(0.22) possibly_damaging(0.873) TCGA-BA-5149-01 19 18121139 18121139 G T ARRDC2 Missense_Mutation p.R328S 0.27 tolerated(0.31) benign(0.007) TCGA-BA-5149-01 19 19843805 19843805 G T ZNF14 5'UTR 0.29 TCGA-BA-5149-01 19 34859497 34859497 G T GPI Missense_Mutation p.V137L 0.09 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-BA-5149-01 19 37210997 37210997 C A ZNF567 Silent p.S426S 0.34 TCGA-BA-5149-01 19 45768123 45768123 G A MARK4 Silent p.S149S 0.08 TCGA-BA-5149-01 1 152281203 152281203 G C FLG Missense_Mutation p.D2053E 0.02 benign(0.417) TCGA-BA-5149-01 1 152281224 152281224 G A FLG Silent p.D2046D 0.02 TCGA-BA-5149-01 1 201751710 201751710 A T NAV1 Silent p.G690G 0.48 TCGA-BA-5149-01 1 23520575 23520575 G A HTR1D Silent p.S46S 0.46 TCGA-BA-5149-01 1 32201083 32201083 C T BAI2 Intron 0.23 TCGA-BA-5149-01 1 33295639 33295639 A C S100PBP Missense_Mutation p.H332P 0.18 deleterious(0.03) benign(0.117) TCGA-BA-5149-01 1 68613869 68613869 T G WLS Missense_Mutation p.T360P 0.10 tolerated(0.25) possibly_damaging(0.653) TCGA-BA-5149-01 1 70881666 70881666 C G CTH Missense_Mutation p.P66A 0.13 deleterious(0.03) probably_damaging(0.95) TCGA-BA-5149-01 1 89427140 89427140 G C CCBL2 Missense_Mutation p.P197R 0.16 tolerated(0.12) possibly_damaging(0.908) TCGA-BA-5149-01 20 25656794 25656794 G A ZNF337 Missense_Mutation p.A377V 0.15 tolerated(0.53) possibly_damaging(0.734) TCGA-BA-5149-01 20 32212735 32212735 C T CBFA2T2 Silent p.T295T 0.35 TCGA-BA-5149-01 20 35717398 35717398 T G RBL1 Missense_Mutation p.K95T 0.37 deleterious(0.01) possibly_damaging(0.898) TCGA-BA-5149-01 20 36149709 36149709 C T NNAT 5'UTR 0.30 TCGA-BA-5149-01 20 37144953 37144953 C T RALGAPB Silent p.L331L 0.11 TCGA-BA-5149-01 20 45315819 45315819 T C TP53RK Missense_Mutation p.Y112C 0.18 deleterious(0.03) probably_damaging(0.975) TCGA-BA-5149-01 21 11014973 11014973 T C TPTE RNA 0.20 TCGA-BA-5149-01 21 36206846 36206846 G A RUNX1 Silent p.S222S 0.17 TCGA-BA-5149-01 22 28315203 28315203 G A PITPNB 5'UTR 0.33 TCGA-BA-5149-01 22 40719213 40719213 G A TNRC6B Missense_Mutation p.D1824N 0.30 deleterious(0) unknown(0) TCGA-BA-5149-01 22 41928719 41928719 A - POLR3H Frame_Shift_Del p.F80Sfs*2 0.25 TCGA-BA-5149-01 22 50928293 50928293 G T MIOX 3'UTR 0.24 TCGA-BA-5149-01 2 136499550 136499550 G A UBXN4 Silent p.R17R 0.19 TCGA-BA-5149-01 2 157426617 157426617 G C GPD2 Missense_Mutation p.A499P 0.15 tolerated(0.14) benign(0.058) TCGA-BA-5149-01 2 162849867 162849867 C T DPP4 Missense_Mutation p.A743T 0.20 tolerated(0.36) possibly_damaging(0.495) TCGA-BA-5149-01 2 207170711 207170711 T G ZDBF2 Missense_Mutation p.Y487D 0.05 deleterious(0) possibly_damaging(0.828) TCGA-BA-5149-01 2 21228715 21228715 G T APOB Silent p.I3675I 0.39 TCGA-BA-5149-01 2 220113249 220113250 - CAG STK16 In_Frame_Ins p.A297dup 0.18 TCGA-BA-5149-01 2 238726675 238726675 C G RBM44 Silent p.L372L 0.23 TCGA-BA-5149-01 2 241622255 241622255 C T AQP12B 5'UTR 0.16 TCGA-BA-5149-01 2 33500964 33500964 G C LTBP1 Missense_Mutation p.R989P 0.18 tolerated(0.13) possibly_damaging(0.763) TCGA-BA-5149-01 2 40657152 40657152 A C SLC8A1 Missense_Mutation p.L90R 0.42 deleterious(0) probably_damaging(0.999) TCGA-BA-5149-01 2 90249317 90249317 G A IGKV1D-43 Silent p.T91T 0.10 TCGA-BA-5149-01 3 107941068 107941068 G T IFT57 Silent p.P34P 0.33 TCGA-BA-5149-01 3 119533912 119533912 C T NR1I2 Missense_Mutation p.A333V 0.14 tolerated(0.32) benign(0.322) TCGA-BA-5149-01 3 128060189 128060189 C T EEFSEC Silent p.R300R 0.28 TCGA-BA-5149-01 3 130292957 130292957 C T COL6A6 Silent p.S1045S 0.30 TCGA-BA-5149-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.35 tolerated(0.44) benign(0.085) TCGA-BA-5149-01 3 186257359 186257359 G C CRYGS Missense_Mutation p.Q17E 0.18 deleterious(0.04) possibly_damaging(0.617) TCGA-BA-5149-01 3 26751105 26751105 T C LRRC3B 5'UTR 0.31 TCGA-BA-5149-01 3 27490193 27490193 T A SLC4A7 Nonsense_Mutation p.R71* 0.51 TCGA-BA-5149-01 3 43756504 43756504 G A ABHD5 Missense_Mutation p.D243N 0.23 tolerated(0.42) benign(0.013) TCGA-BA-5149-01 3 44612216 44612216 C G ZKSCAN7 Silent p.L538L 0.22 TCGA-BA-5149-01 3 48507992 48507993 CT - TREX1 Frame_Shift_Del p.L35Gfs*121 0.35 TCGA-BA-5149-01 3 57232884 57232884 G A HESX1 Missense_Mutation p.S85L 0.26 tolerated(0.69) benign(0.001) TCGA-BA-5149-01 3 87322645 87322645 G C POU1F1 Silent p.V48V 0.27 TCGA-BA-5149-01 4 114294489 114294489 A C ANK2 Missense_Mutation p.K3915Q 0.36 benign(0.341) TCGA-BA-5149-01 4 118005580 118005580 C A TRAM1L1 Missense_Mutation p.V324L 0.40 tolerated(0.09) benign(0.001) TCGA-BA-5149-01 4 122738035 122738035 A G EXOSC9 3'UTR 0.17 TCGA-BA-5149-01 4 155156833 155156833 C A DCHS2 Missense_Mutation p.A2536S 0.14 tolerated(0.09) benign(0.307) TCGA-BA-5149-01 4 164393537 164393537 G C TKTL2 Missense_Mutation p.F450L 0.22 tolerated(0.7) probably_damaging(1) TCGA-BA-5149-01 4 39523092 39523092 T C UGDH Missense_Mutation p.Y14C 0.24 deleterious(0) probably_damaging(1) TCGA-BA-5149-01 4 5862807 5862807 C G CRMP1 Missense_Mutation p.D201H 0.29 deleterious(0) probably_damaging(0.999) TCGA-BA-5149-01 4 71275443 71275443 T C PROL1 Missense_Mutation p.I133T 0.21 deleterious_low_confidence(0.02) benign(0.071) TCGA-BA-5149-01 5 101606380 101606380 T A SLCO4C1 Silent p.G250G 0.08 TCGA-BA-5149-01 5 118469800 118469800 G A DMXL1 Silent p.R727R 0.09 TCGA-BA-5149-01 5 120021755 120021755 C A PRR16 Missense_Mutation p.A66D 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BA-5149-01 5 13721351 13721351 G A DNAH5 Missense_Mutation p.R4013C 0.37 possibly_damaging(0.898) TCGA-BA-5149-01 5 150925174 150925174 G T FAT2 Missense_Mutation p.F1838L 0.17 benign(0.4) TCGA-BA-5149-01 5 170222219 170222219 C A GABRP Missense_Mutation p.T83K 0.05 deleterious(0) possibly_damaging(0.575) TCGA-BA-5149-01 5 56170929 56170929 G A MAP3K1 Missense_Mutation p.R586H 0.15 tolerated(0.21) benign(0.244) TCGA-BA-5149-01 6 109484156 109484158 ATC - CEP57L1 In_Frame_Del p.I456del 0.25 TCGA-BA-5149-01 6 111498518 111498518 C T SLC16A10 Missense_Mutation p.R198C 0.25 deleterious(0) probably_damaging(1) TCGA-BA-5149-01 6 170626814 170626814 A G FAM120B Missense_Mutation p.I112M 0.25 deleterious(0) probably_damaging(0.994) TCGA-BA-5149-01 6 24357665 24357665 C T KAAG1 5'UTR 0.19 TCGA-BA-5149-01 6 25726458 25726458 C T HIST1H2AA Missense_Mutation p.G100S 0.36 tolerated_low_confidence(0.08) benign(0.183) TCGA-BA-5149-01 6 28872383 28872383 G A TRIM27 Missense_Mutation p.R336W 0.13 deleterious(0) probably_damaging(0.993) TCGA-BA-5149-01 6 32038061 32038061 C A TNXB Missense_Mutation p.Q1707H 0.29 probably_damaging(0.995) TCGA-BA-5149-01 6 32093996 32093996 T A ATF6B Missense_Mutation p.T126S 0.40 tolerated(0.63) benign(0.005) TCGA-BA-5149-01 6 88138453 88138453 A G C6ORF165 Missense_Mutation p.H357R 0.38 tolerated(0.27) benign(0.348) TCGA-BA-5149-01 7 103252122 103252122 A T RELN Missense_Mutation p.M944K 0.41 tolerated(0.78) benign(0.009) TCGA-BA-5149-01 7 107115239 107115239 G A GPR22 Missense_Mutation p.R245K 0.21 tolerated(0.21) possibly_damaging(0.59) TCGA-BA-5149-01 7 11418786 11418786 A G THSD7A Missense_Mutation p.V1571A 0.13 deleterious(0) benign(0.017) TCGA-BA-5149-01 7 156755792 156755792 G T NOM1 Missense_Mutation p.V612L 0.28 deleterious(0.03) benign(0.134) TCGA-BA-5149-01 7 37989814 37989814 T A EPDR1 Missense_Mutation p.I164N 0.09 deleterious(0) probably_damaging(0.916) TCGA-BA-5149-01 7 44715617 44715617 A - OGDH Frame_Shift_Del p.N359Ifs*26 0.23 TCGA-BA-5149-01 7 45750144 45750144 G T ADCY1 Missense_Mutation p.V984L 0.15 deleterious(0) probably_damaging(0.999) TCGA-BA-5149-01 7 45956911 45956911 T C IGFBP3 Silent p.K183K 0.42 TCGA-BA-5149-01 7 82764455 82764455 T G PCLO Missense_Mutation p.Q804P 0.30 unknown(0) TCGA-BA-5149-01 7 86415678 86415678 C T GRM3 Silent p.T190T 0.21 TCGA-BA-5149-01 8 103840710 103840710 T C AZIN1 3'UTR 0.17 TCGA-BA-5149-01 8 125577991 125577991 C G MTSS1 Missense_Mutation p.D246H 0.51 deleterious(0) probably_damaging(0.995) TCGA-BA-5149-01 8 139144748 139144748 C G FAM135B 3'UTR 0.08 TCGA-BA-5149-01 8 143996592 143996592 C G CYP11B2 Missense_Mutation p.Q155H 0.12 tolerated(0.09) benign(0.16) TCGA-BA-5149-01 8 25166333 25166333 C G DOCK5 Missense_Mutation p.L362V 0.53 deleterious_low_confidence(0.02) benign(0.11) TCGA-BA-5149-01 8 70591756 70591756 C G SLCO5A1 Missense_Mutation p.K627N 0.16 tolerated(0.12) benign(0.243) TCGA-BA-5149-01 8 73480489 73480489 G C KCNB2 Missense_Mutation p.D174H 0.14 deleterious(0.04) benign(0.002) TCGA-BA-5149-01 8 82195651 82195651 A G FABP5 Missense_Mutation p.I44V 0.08 tolerated(0.21) benign(0.005) TCGA-BA-5149-01 9 108483954 108483954 T A TMEM38B Missense_Mutation p.Y136N 0.63 tolerated(0.17) benign(0.013) TCGA-BA-5149-01 9 139411734 139411740 CTCGCAC - NOTCH1 Frame_Shift_Del p.Q513Hfs*116 0.48 TCGA-BA-5149-01 X 123164834 123164834 C T STAG2 Silent p.G49G 0.71 TCGA-BA-5149-01 X 15268558 15268558 C A ASB9 Nonsense_Mutation p.E188* 0.41 TCGA-BA-5149-01 X 153278545 153278545 C T IRAK1 Missense_Mutation p.G627R 0.50 tolerated(0.61) benign(0.003) TCGA-BA-5149-01 X 70149727 70149727 C T SLC7A3 Missense_Mutation p.G41S 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-BA-5149-01 X 70149728 70149728 C A SLC7A3 Silent p.L40L 0.18 TCGA-BA-5151-01 10 12259436 12259436 C T CDC123 Missense_Mutation p.S137F 0.09 deleterious(0) probably_damaging(1) TCGA-BA-5151-01 10 124896943 124896943 G A HMX3 Missense_Mutation p.R257Q 0.15 deleterious(0) probably_damaging(1) TCGA-BA-5151-01 10 15138710 15138710 C T C10orf111 Silent p.K38K 0.12 TCGA-BA-5151-01 10 69948722 69948722 C T MYPN Missense_Mutation p.R922C 0.18 deleterious(0) probably_damaging(0.985) TCGA-BA-5151-01 10 81154151 81154151 G A ZCCHC24 Missense_Mutation p.R165C 0.18 deleterious(0) probably_damaging(0.98) TCGA-BA-5151-01 10 97917661 97917661 G T ZNF518A RNA 0.13 TCGA-BA-5151-01 11 108350193 108350193 G T KDELC2 Silent p.T376T 0.17 TCGA-BA-5151-01 11 31671745 31671745 A G ELP4 Silent p.L373L 0.19 TCGA-BA-5151-01 11 46903411 46903411 G A LRP4 Nonsense_Mutation p.R886* 0.23 TCGA-BA-5151-01 11 7670058 7670058 A T PPFIBP2 Missense_Mutation p.R609W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BA-5151-01 12 123103082 123103082 G A KNTC1 Missense_Mutation p.A2047T 0.25 tolerated(0.13) probably_damaging(0.982) TCGA-BA-5151-01 12 124798975 124798975 C A FAM101A Nonsense_Mutation p.C104* 0.18 TCGA-BA-5151-01 12 57968982 57968982 T C KIF5A Missense_Mutation p.L611P 0.24 tolerated(0.32) possibly_damaging(0.823) TCGA-BA-5151-01 13 49076887 49076887 C T RCBTB2 Missense_Mutation p.A364T 0.17 tolerated(0.24) possibly_damaging(0.864) TCGA-BA-5151-01 13 99554563 99554563 G A DOCK9 Silent p.A453A 0.19 TCGA-BA-5151-01 14 21936559 21936559 G A RAB2B Missense_Mutation p.H107Y 0.16 tolerated(0.58) benign(0.026) TCGA-BA-5151-01 14 31099754 31099754 G A SCFD1 Missense_Mutation p.M68I 0.17 tolerated(0.13) benign(0.023) TCGA-BA-5151-01 14 91142993 91142993 G A TTC7B Silent p.D342D 0.14 TCGA-BA-5151-01 15 102358822 102358822 T C OR4F15 Silent p.L145L 0.14 TCGA-BA-5151-01 15 37109441 37109441 C A CSNK1A1P1 RNA 0.18 TCGA-BA-5151-01 15 38808519 38808519 T C RASGRP1 Missense_Mutation p.Q185R 0.15 deleterious(0.02) possibly_damaging(0.565) TCGA-BA-5151-01 15 62299547 62299547 G A VPS13C Missense_Mutation p.T417I 0.13 tolerated(0.06) possibly_damaging(0.492) TCGA-BA-5151-01 15 66727455 66727455 G T MAP2K1 Missense_Mutation p.K57N 0.14 deleterious(0) probably_damaging(0.994) TCGA-BA-5151-01 15 90213327 90213327 G A PLIN1 Missense_Mutation p.A161V 0.19 tolerated(0.22) benign(0.072) TCGA-BA-5151-01 16 29990752 29990752 T G TAOK2 Missense_Mutation p.V193G 0.12 deleterious(0) probably_damaging(0.99) TCGA-BA-5151-01 16 30510407 30510407 G A ITGAL Silent p.V615V 0.18 TCGA-BA-5151-01 16 48149471 48149471 C T ABCC12 Missense_Mutation p.R615H 0.25 deleterious(0.02) probably_damaging(0.972) TCGA-BA-5151-01 16 67272317 67272317 C T FHOD1 Missense_Mutation p.R136H 0.21 deleterious(0.03) probably_damaging(0.988) TCGA-BA-5151-01 16 67645241 67645242 - G CTCF Frame_Shift_Ins p.A171Gfs*20 0.14 TCGA-BA-5151-01 16 67700071 67700071 G A ENKD1 Silent p.P61P 0.21 TCGA-BA-5151-01 17 37368614 37368614 G A STAC2 Silent p.D389D 0.13 TCGA-BA-5151-01 17 40474419 40474419 T A STAT3 Missense_Mutation p.D661V 0.21 tolerated(0.43) possibly_damaging(0.688) TCGA-BA-5151-01 17 45367599 45367599 G T ITGB3 Missense_Mutation p.D362Y 0.19 deleterious(0) probably_damaging(0.963) TCGA-BA-5151-01 17 48913362 48913362 C G WFIKKN2 Missense_Mutation p.L22V 0.11 tolerated(0.25) benign(0.123) TCGA-BA-5151-01 17 7099547 7099547 G A DLG4 Silent p.F474F 0.05 TCGA-BA-5151-01 17 7578503 7578503 C T TP53 Missense_Mutation p.V143M 0.36 deleterious(0) probably_damaging(1) TCGA-BA-5151-01 17 78899184 78899184 G A RPTOR Silent p.A941A 0.16 TCGA-BA-5151-01 18 9204522 9204522 C G ANKRD12 Missense_Mutation p.S95C 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.784) TCGA-BA-5151-01 19 11132522 11132522 C T SMARCA4 Missense_Mutation p.P913L 0.14 probably_damaging(0.992) TCGA-BA-5151-01 19 36214909 36214909 G T KMT2B Splice_Site p.X1112_splice 0.12 TCGA-BA-5151-01 19 38939326 38939326 G A RYR1 Missense_Mutation p.G332D 0.19 probably_damaging(0.999) TCGA-BA-5151-01 19 52856994 52856994 G C ZNF610 Silent p.L41L 0.18 TCGA-BA-5151-01 19 54327166 54327166 C G NLRP12 Missense_Mutation p.R88T 0.22 deleterious(0) possibly_damaging(0.902) TCGA-BA-5151-01 19 9088876 9088876 G A MUC16 Missense_Mutation p.S980L 0.22 unknown(0) TCGA-BA-5151-01 1 152187690 152187690 T A HRNR Nonsense_Mutation p.R2139* 0.02 TCGA-BA-5151-01 1 152191224 152191224 C T HRNR Missense_Mutation p.G961S 0.20 unknown(0) TCGA-BA-5151-01 1 190423836 190423836 T G BRINP3 Missense_Mutation p.D62A 0.21 deleterious(0.02) benign(0.255) TCGA-BA-5151-01 1 201012531 201012531 G T CACNA1S Silent p.V1642V 0.23 TCGA-BA-5151-01 1 207697329 207697329 G A CR1 Silent p.E287E 0.14 TCGA-BA-5151-01 1 207718782 207718782 G A CR1 Missense_Mutation p.R789H 0.40 tolerated(0.71) benign(0.149) TCGA-BA-5151-01 1 23885954 23885954 G A ID3 5'UTR 0.22 TCGA-BA-5151-01 1 40366778 40366778 C T MYCL Missense_Mutation p.S140N 0.15 tolerated(0.33) benign(0.007) TCGA-BA-5151-01 1 6521694 6521694 G A TNFRSF25 Missense_Mutation p.R361C 0.20 deleterious(0) probably_damaging(1) TCGA-BA-5151-01 1 75172795 75172795 G A CRYZ Nonsense_Mutation p.R242* 0.19 TCGA-BA-5151-01 1 99161197 99161197 A G SNX7 Missense_Mutation p.N255D 0.16 tolerated(0.91) benign(0.001) TCGA-BA-5151-01 20 11903288 11903288 C G BTBD3 Missense_Mutation p.I181M 0.16 tolerated(0.24) benign(0.044) TCGA-BA-5151-01 20 36631033 36631033 C T TTI1 Silent p.L883L 0.19 TCGA-BA-5151-01 20 40743859 40743859 G A PTPRT Missense_Mutation p.R1027C 0.19 deleterious(0) probably_damaging(1) TCGA-BA-5151-01 21 31538657 31538657 G A CLDN17 Silent p.I93I 0.22 TCGA-BA-5151-01 21 45993723 45993723 G A KRTAP10-4 Missense_Mutation p.D30N 0.19 deleterious(0.01) benign(0.13) TCGA-BA-5151-01 2 118854131 118854131 C G INSIG2 5'UTR 0.15 TCGA-BA-5151-01 2 160585576 160585576 C T MARCH7 Nonsense_Mutation p.Q15* 0.32 TCGA-BA-5151-01 2 179979882 179979882 C A SESTD1 Silent p.L583L 0.24 TCGA-BA-5151-01 2 182767033 182767033 A G SSFA2 Missense_Mutation p.D418G 0.14 tolerated(0.41) benign(0) TCGA-BA-5151-01 2 202149676 202149688 ATCCTCTCCCATG CTC CASP8 Frame_Shift_Del p.I373Lfs*20 0.26 TCGA-BA-5151-01 2 210642247 210642247 C T UNC80 Silent p.F188F 0.35 TCGA-BA-5151-01 2 80101317 80101317 C T CTNNA2 Missense_Mutation p.A234V 0.32 tolerated(0.17) possibly_damaging(0.492) TCGA-BA-5151-01 2 80620359 80620359 T C CTNNA2 Silent p.D360D 0.35 TCGA-BA-5151-01 3 119084258 119084258 C T ARHGAP31 Missense_Mutation p.R66W 0.14 deleterious(0) probably_damaging(0.998) TCGA-BA-5151-01 3 126708596 126708596 G A PLXNA1 Nonsense_Mutation p.W387* 0.27 TCGA-BA-5151-01 3 138351800 138351800 C A FAIM Missense_Mutation p.T174N 0.35 deleterious(0.03) possibly_damaging(0.828) TCGA-BA-5151-01 3 142098954 142098954 G A XRN1 Silent p.P895P 0.19 TCGA-BA-5151-01 3 184101432 184101432 T C CHRD Splice_Site p.X480_splice 0.10 TCGA-BA-5151-01 3 194062951 194062951 G C CPN2 Missense_Mutation p.P161A 0.11 deleterious(0.03) possibly_damaging(0.765) TCGA-BA-5151-01 3 6903213 6903213 G A GRM7 Silent p.E46E 0.20 TCGA-BA-5151-01 3 81539534 81539534 T C GBE1 3'UTR 0.16 TCGA-BA-5151-01 4 111430849 111430849 G A ENPEP Silent p.E360E 0.16 TCGA-BA-5151-01 4 68928818 68928818 C A TMPRSS11F Intron 0.21 TCGA-BA-5151-01 5 140741347 140741347 C T PCDHGB2 Missense_Mutation p.R549C 0.16 deleterious(0.01) benign(0.219) TCGA-BA-5151-01 5 156456763 156456763 C T HAVCR1 Missense_Mutation p.S359N 0.19 tolerated(1) benign(0.003) TCGA-BA-5151-01 5 161524781 161524781 C T GABRG2 Silent p.S155S 0.18 TCGA-BA-5151-01 5 172386987 172386987 G C RPL26L1 Missense_Mutation p.E37D 0.16 tolerated(0.18) benign(0.01) TCGA-BA-5151-01 5 175958006 175958006 G C RNF44 Missense_Mutation p.T161S 0.25 tolerated(1) benign(0) TCGA-BA-5151-01 5 180040031 180040032 - G FLT4 Frame_Shift_Ins p.E1138Gfs*76 0.24 TCGA-BA-5151-01 6 106552717 106552717 C T PRDM1 Silent p.L228L 0.17 TCGA-BA-5151-01 6 157528080 157528080 G A ARID1B Silent p.A1935A 0.21 TCGA-BA-5151-01 6 24437400 24437400 C T GPLD1 Missense_Mutation p.R713H 0.16 deleterious(0) probably_damaging(0.999) TCGA-BA-5151-01 6 29455445 29455445 C A MAS1L Missense_Mutation p.A79S 0.27 tolerated(0.36) benign(0.125) TCGA-BA-5151-01 6 35467758 35467758 G A TULP1 Missense_Mutation p.P499S 0.38 tolerated(0.07) benign(0.021) TCGA-BA-5151-01 6 56489977 56489977 G T DST Nonsense_Mutation p.S1066* 0.18 TCGA-BA-5151-01 7 100696279 100696279 G A MUC17 Silent p.T4372T 0.15 TCGA-BA-5151-01 7 107330644 107330644 C T SLC26A4 Missense_Mutation p.R409C 0.23 deleterious(0) probably_damaging(1) TCGA-BA-5151-01 7 127222240 127222240 T C GCC1 Missense_Mutation p.N719S 0.19 deleterious(0) probably_damaging(0.999) TCGA-BA-5151-01 7 143417019 143417019 G A FAM115C Silent p.A289A 0.15 TCGA-BA-5151-01 7 149510810 149510810 C T SSPO RNA 0.23 TCGA-BA-5151-01 7 51203960 51203960 C T COBL Silent p.S284S 0.16 TCGA-BA-5151-01 8 104955091 104955091 C A RIMS2 Missense_Mutation p.H880N 0.15 tolerated_low_confidence(0.32) benign(0.01) TCGA-BA-5151-01 8 110346614 110346614 G A ENY2 5'UTR 0.13 TCGA-BA-5151-01 8 11996046 11996046 G A USP17L2 Missense_Mutation p.P75L 0.04 tolerated(0.22) probably_damaging(0.999) TCGA-BA-5151-01 8 144810795 144810795 G A FAM83H Missense_Mutation p.A279V 0.09 deleterious(0) probably_damaging(1) TCGA-BA-5151-01 8 32620826 32620826 T A NRG1 Intron 0.15 TCGA-BA-5151-01 9 100075586 100075586 G A CCDC180 Missense_Mutation p.A184T 0.11 tolerated(0.09) benign(0.428) TCGA-BA-5151-01 9 100424349 100424349 G A NCBP1 Silent p.L542L 0.11 TCGA-BA-5151-01 9 100849556 100849556 G A TRIM14 3'UTR 0.20 TCGA-BA-5151-01 9 92220945 92220945 A C GADD45G Missense_Mutation p.E144A 0.12 deleterious(0.01) possibly_damaging(0.5) TCGA-BA-5151-01 X 118217058 118217058 T C KIAA1210 Missense_Mutation p.Q1625R 0.34 tolerated(0.07) benign(0.015) TCGA-BA-5151-01 X 142967747 142967747 C G UBE2NL 3'UTR 0.39 TCGA-BA-5152-01 10 103344383 103344383 G T POLL Missense_Mutation p.F289L 0.21 deleterious(0.04) benign(0.086) TCGA-BA-5152-01 10 106152107 106152107 G C CCDC147 Silent p.V494V 0.15 TCGA-BA-5152-01 10 115348712 115348712 C G NRAP 3'UTR 0.19 TCGA-BA-5152-01 10 115804636 115804636 C T ADRB1 Missense_Mutation p.R249C 0.32 deleterious(0) probably_damaging(0.951) TCGA-BA-5152-01 10 118354333 118354333 G C PNLIPRP1 Missense_Mutation p.R141P 0.14 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 10 119044202 119044202 G A PDZD8 Missense_Mutation p.S681L 0.10 deleterious(0) probably_damaging(0.997) TCGA-BA-5152-01 10 123976183 123976183 C G TACC2 Missense_Mutation p.I2462M 0.04 probably_damaging(0.957) TCGA-BA-5152-01 10 129207596 129207596 G A DOCK1 Silent p.V1407V 0.11 TCGA-BA-5152-01 10 131640406 131640406 G A EBF3 Missense_Mutation p.S440L 0.29 deleterious_low_confidence(0.05) benign(0.083) TCGA-BA-5152-01 10 133946815 133946815 G C JAKMIP3 Splice_Site p.X212_splice 0.21 TCGA-BA-5152-01 10 16957877 16957877 G A CUBN Nonsense_Mutation p.Q2385* 0.12 TCGA-BA-5152-01 10 18827162 18827162 C G CACNB2 Missense_Mutation p.H452Q 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-BA-5152-01 10 22208791 22208791 G C DNAJC1 Nonsense_Mutation p.S202* 0.21 TCGA-BA-5152-01 10 25273261 25273261 C G ENKUR 3'UTR 0.29 TCGA-BA-5152-01 10 26286125 26286125 G C MYO3A Missense_Mutation p.R149T 0.24 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 10 30317643 30317643 C G KIAA1462 Missense_Mutation p.Q478H 0.24 tolerated(0.06) benign(0.103) TCGA-BA-5152-01 10 35327992 35327992 C G CUL2 Missense_Mutation p.D264H 0.20 deleterious(0.01) probably_damaging(0.948) TCGA-BA-5152-01 10 43016056 43016056 G A ZNF37BP RNA 0.13 TCGA-BA-5152-01 10 436786 436786 C G DIP2C Missense_Mutation p.Q426H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BA-5152-01 10 5495245 5495245 C T NET1 Silent p.I209I 0.24 TCGA-BA-5152-01 10 55782797 55782797 C G PCDH15 Missense_Mutation p.G794A 0.21 deleterious(0) probably_damaging(0.992) TCGA-BA-5152-01 10 5951160 5951160 C T FBXO18 Missense_Mutation p.P359L 0.22 deleterious(0.01) possibly_damaging(0.786) TCGA-BA-5152-01 10 75335391 75335391 G A USP54 Missense_Mutation p.S9L 0.15 deleterious(0.02) probably_damaging(0.977) TCGA-BA-5152-01 10 76789241 76789241 C T KAT6B Silent p.S1553S 0.13 TCGA-BA-5152-01 10 7769773 7769773 G C ITIH2 Missense_Mutation p.D421H 0.25 deleterious(0.03) possibly_damaging(0.833) TCGA-BA-5152-01 10 98146809 98146809 G C TLL2 Missense_Mutation p.H585D 0.22 deleterious(0.01) benign(0.009) TCGA-BA-5152-01 10 98362077 98362077 C G PIK3AP1 Missense_Mutation p.E774Q 0.41 tolerated(0.15) possibly_damaging(0.859) TCGA-BA-5152-01 10 99655057 99655057 G A CRTAC1 Silent p.I477I 0.33 TCGA-BA-5152-01 11 102195714 102195714 G A BIRC3 Missense_Mutation p.M158I 0.28 deleterious(0.01) benign(0.003) TCGA-BA-5152-01 11 103047052 103047052 G C DYNC2H1 Silent p.L1921L 0.20 TCGA-BA-5152-01 11 104871152 104871152 A T CASP5 Missense_Mutation p.V276E 0.20 deleterious(0) probably_damaging(0.997) TCGA-BA-5152-01 11 107975080 107975080 C G CUL5 Missense_Mutation p.S771C 0.20 deleterious(0.01) benign(0.067) TCGA-BA-5152-01 11 116730297 116730297 G C SIK3 Missense_Mutation p.Q711E 0.09 deleterious_low_confidence(0) benign(0.083) TCGA-BA-5152-01 11 118239345 118239345 G C UBE4A Splice_Site p.X41_splice 0.25 TCGA-BA-5152-01 11 118892481 118892481 G C TRAPPC4 Missense_Mutation p.V156L 0.18 tolerated(0.53) benign(0.009) TCGA-BA-5152-01 11 12263802 12263802 C G MICAL2 Silent p.L793L 0.25 TCGA-BA-5152-01 11 126110786 126110786 C G FAM118B Silent p.L62L 0.22 TCGA-BA-5152-01 11 130275461 130275461 G A ADAMTS8 Missense_Mutation p.P888S 0.12 deleterious(0.01) possibly_damaging(0.728) TCGA-BA-5152-01 11 13427228 13427228 C T BTBD10 Silent p.Q328Q 0.24 TCGA-BA-5152-01 11 14520460 14520460 C G COPB1 Missense_Mutation p.E5D 0.20 tolerated(0.32) benign(0.022) TCGA-BA-5152-01 11 14539457 14539457 G C PSMA1 Nonsense_Mutation p.S46* 0.31 TCGA-BA-5152-01 11 17333590 17333590 G C NUCB2 Missense_Mutation p.D279H 0.07 deleterious(0) probably_damaging(0.936) TCGA-BA-5152-01 11 1774844 1774844 C T CTSD Silent p.P376P 0.17 TCGA-BA-5152-01 11 1857652 1857652 C T SYT8 Intron 0.29 TCGA-BA-5152-01 11 22281213 22281213 C T ANO5 Missense_Mutation p.S519L 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-BA-5152-01 11 22301235 22301235 G T ANO5 Missense_Mutation p.G889V 0.08 tolerated(0.08) benign(0.075) TCGA-BA-5152-01 11 2950434 2950434 G C PHLDA2 Missense_Mutation p.S54C 0.16 tolerated(0.05) probably_damaging(0.983) TCGA-BA-5152-01 11 40137420 40137420 A T LRRC4C Missense_Mutation p.N141K 0.24 deleterious(0.01) benign(0.176) TCGA-BA-5152-01 11 45975109 45975109 G T PHF21A Missense_Mutation p.A354E 0.11 tolerated(0.52) benign(0.004) TCGA-BA-5152-01 11 46897369 46897369 C T LRP4 Missense_Mutation p.D1229N 0.12 deleterious(0) possibly_damaging(0.714) TCGA-BA-5152-01 11 47283391 47283391 G A NR1H3 Intron 0.24 TCGA-BA-5152-01 11 479110 479110 G C PTDSS2 Silent p.V131V 0.20 TCGA-BA-5152-01 11 48168425 48168425 C G PTPRJ Intron 0.26 TCGA-BA-5152-01 11 56409589 56409589 G T OR5AP2 Missense_Mutation p.F109L 0.30 tolerated(0.34) benign(0.126) TCGA-BA-5152-01 11 57235099 57235099 C G RTN4RL2 Missense_Mutation p.L17V 0.23 tolerated(0.1) benign(0.364) TCGA-BA-5152-01 11 59211187 59211187 C T OR5A1 Silent p.C182C 0.22 TCGA-BA-5152-01 11 60156975 60156975 C G MS4A7 Nonsense_Mutation p.S151* 0.18 TCGA-BA-5152-01 11 605232 605232 G A PHRF1 Silent p.L422L 0.24 TCGA-BA-5152-01 11 62286867 62286867 C G AHNAK Missense_Mutation p.E5008Q 0.28 possibly_damaging(0.495) TCGA-BA-5152-01 11 63767135 63767135 C T MACROD1 Silent p.L255L 0.14 TCGA-BA-5152-01 11 63974990 63974990 C G FERMT3 Missense_Mutation p.Q52E 0.14 tolerated(0.74) benign(0) TCGA-BA-5152-01 11 64037600 64037600 G C BAD 3'UTR 0.20 TCGA-BA-5152-01 11 64037697 64037697 G A BAD Missense_Mutation p.S164F 0.21 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-BA-5152-01 11 64054131 64054131 C G GPR137 Silent p.L103L 0.24 TCGA-BA-5152-01 11 64082296 64082296 G A ESRRA Missense_Mutation p.D219N 0.15 deleterious(0.03) benign(0.022) TCGA-BA-5152-01 11 64510267 64510267 G A RASGRP2 Silent p.F24F 0.17 TCGA-BA-5152-01 11 64673226 64673226 G A ATG2A Missense_Mutation p.S1120F 0.08 deleterious(0) benign(0.206) TCGA-BA-5152-01 11 65635368 65635368 G T EFEMP2 Silent p.I378I 0.21 TCGA-BA-5152-01 11 65727397 65727397 G A SART1 5'Flank 0.18 TCGA-BA-5152-01 11 66468420 66468420 G A SPTBN2 Silent p.L1050L 0.28 TCGA-BA-5152-01 11 68707045 68707045 G A IGHMBP2 Missense_Mutation p.R943K 0.20 deleterious(0.04) benign(0.41) TCGA-BA-5152-01 11 72290599 72290599 G T PDE2A Silent p.I745I 0.17 TCGA-BA-5152-01 11 73073674 73073674 G A ARHGEF17 Missense_Mutation p.E1631K 0.33 deleterious(0.04) possibly_damaging(0.64) TCGA-BA-5152-01 11 76891443 76891443 G C MYO7A Missense_Mutation p.E870D 0.29 tolerated(0.35) benign(0.432) TCGA-BA-5152-01 11 82924385 82924385 C T ANKRD42 Intron 0.31 TCGA-BA-5152-01 11 84028307 84028307 C G DLG2 Intron 0.29 TCGA-BA-5152-01 11 9875240 9875240 C G SBF2 Missense_Mutation p.E795Q 0.10 deleterious(0.04) possibly_damaging(0.628) TCGA-BA-5152-01 12 100657384 100657384 C A DEPDC4 Nonsense_Mutation p.E149* 0.34 TCGA-BA-5152-01 12 100657450 100657450 G C DEPDC4 Missense_Mutation p.L127V 0.31 deleterious(0.02) probably_damaging(1) TCGA-BA-5152-01 12 103248921 103248921 G A PAH Silent p.F233F 0.26 TCGA-BA-5152-01 12 105388468 105388468 G C C12orf45 Missense_Mutation p.K184N 0.29 deleterious(0.01) benign(0.432) TCGA-BA-5152-01 12 105446691 105446691 C T ALDH1L2 Missense_Mutation p.E436K 0.30 tolerated(0.95) benign(0) TCGA-BA-5152-01 12 109577263 109577263 C G ACACB Missense_Mutation p.S18C 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-BA-5152-01 12 109629726 109629726 C T ACACB Silent p.C790C 0.07 TCGA-BA-5152-01 12 112123512 112123512 C G BRAP Intron 0.39 TCGA-BA-5152-01 12 112590581 112590581 G A TRAFD1 Missense_Mutation p.E579K 0.16 deleterious(0.04) unknown(0) TCGA-BA-5152-01 12 112699141 112699141 G A HECTD4 Silent p.L801L 0.28 TCGA-BA-5152-01 12 117175661 117175661 C G C12orf49 Missense_Mutation p.K15N 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-BA-5152-01 12 121448689 121448689 G A C12orf43 Nonsense_Mutation p.Q77* 0.35 TCGA-BA-5152-01 12 122962395 122962395 G A ZCCHC8 Silent p.L446L 0.23 TCGA-BA-5152-01 12 122967208 122967208 C G ZCCHC8 Missense_Mutation p.E236Q 0.25 tolerated(0.14) possibly_damaging(0.782) TCGA-BA-5152-01 12 123014683 123014683 G C KNTC1 Missense_Mutation p.E25Q 0.22 deleterious(0) probably_damaging(0.979) TCGA-BA-5152-01 12 123782660 123782660 G A SBNO1 Missense_Mutation p.R1302C 0.31 deleterious(0.03) possibly_damaging(0.692) TCGA-BA-5152-01 12 123810857 123810857 G A SBNO1 Nonsense_Mutation p.Q573* 0.10 TCGA-BA-5152-01 12 12940238 12940238 G A APOLD1 Silent p.E164E 0.29 TCGA-BA-5152-01 12 13243458 13243458 C T GSG1 Missense_Mutation p.E115K 0.28 deleterious(0) probably_damaging(0.967) TCGA-BA-5152-01 12 132611057 132611057 G C RP13-977J11.5 RNA 0.14 TCGA-BA-5152-01 12 21680692 21680692 G C C12orf39 Silent p.R59R 0.29 TCGA-BA-5152-01 12 278251 278251 C T IQSEC3 Missense_Mutation p.S1015L 0.30 tolerated(0.1) possibly_damaging(0.879) TCGA-BA-5152-01 12 30783892 30783892 C G IPO8 Splice_Site p.X1006_splice 0.29 TCGA-BA-5152-01 12 50029224 50029224 G A PRPF40B Missense_Mutation p.D415N 0.22 deleterious(0) probably_damaging(0.998) TCGA-BA-5152-01 12 51685669 51685669 G C BIN2 Missense_Mutation p.I407M 0.24 tolerated_low_confidence(0.05) benign(0.005) TCGA-BA-5152-01 12 52470984 52470984 G C C12orf44 3'UTR 0.09 TCGA-BA-5152-01 12 53045411 53045411 C G KRT2 Missense_Mutation p.Q172H 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-BA-5152-01 12 54069937 54069937 C T ATP5G2 Missense_Mutation p.V14M 0.11 tolerated_low_confidence(0.15) benign(0) TCGA-BA-5152-01 12 54675943 54675943 G A HNRNPA1 Missense_Mutation p.E117K 0.27 tolerated(0.06) possibly_damaging(0.455) TCGA-BA-5152-01 12 56664084 56664084 G C COQ10A Missense_Mutation p.E243Q 0.24 deleterious_low_confidence(0.04) benign(0.222) TCGA-BA-5152-01 12 57924487 57924487 C T DCTN2 Silent p.K402K 0.07 TCGA-BA-5152-01 12 58166506 58166506 G A METTL21B 5'UTR 0.31 TCGA-BA-5152-01 12 6103292 6103292 G A VWF Nonsense_Mutation p.Q2112* 0.20 TCGA-BA-5152-01 12 6103365 6103365 G T VWF Silent p.I2087I 0.24 TCGA-BA-5152-01 12 6457124 6457124 G A SCNN1A Missense_Mutation p.P701L 0.31 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-BA-5152-01 12 64813889 64813889 G A XPOT Missense_Mutation p.E177K 0.32 deleterious(0.04) probably_damaging(0.932) TCGA-BA-5152-01 12 65110508 65110508 C T GNS 3'UTR 0.23 TCGA-BA-5152-01 12 6887472 6887472 G C LAG3 Missense_Mutation p.K498N 0.28 deleterious(0) probably_damaging(0.997) TCGA-BA-5152-01 12 75692498 75692498 C T CAPS2 Missense_Mutation p.G357E 0.20 deleterious(0.01) probably_damaging(0.962) TCGA-BA-5152-01 12 79689973 79689973 G T SYT1 Missense_Mutation p.R200L 0.27 deleterious(0.03) benign(0.361) TCGA-BA-5152-01 12 88547232 88547232 G C TMTC3 Missense_Mutation p.K118N 0.20 tolerated(0.49) benign(0.005) TCGA-BA-5152-01 12 93835769 93835769 C T UBE2N 5'UTR 0.30 TCGA-BA-5152-01 13 100204467 100204467 G A TM9SF2 Missense_Mutation p.E459K 0.14 tolerated(0.68) benign(0.052) TCGA-BA-5152-01 13 100764110 100764110 C G PCCA Missense_Mutation p.L67V 0.27 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 13 20716765 20716765 C G GJA3 Missense_Mutation p.E221D 0.15 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 13 20797248 20797248 C T GJB6 Silent p.Q124Q 0.24 TCGA-BA-5152-01 13 29001376 29001376 C A FLT1 Silent p.L452L 0.20 TCGA-BA-5152-01 13 30804674 30804674 G A KATNAL1 Nonsense_Mutation p.R315* 0.12 TCGA-BA-5152-01 13 38172893 38172893 G A POSTN 5'UTR 0.14 TCGA-BA-5152-01 13 39450265 39450265 G C FREM2 Missense_Mutation p.W2796C 0.16 deleterious(0) probably_damaging(0.998) TCGA-BA-5152-01 13 46629983 46629983 G C CPB2 Missense_Mutation p.S334C 0.21 tolerated(0.17) possibly_damaging(0.876) TCGA-BA-5152-01 13 95858999 95858999 G A ABCC4 Silent p.L316L 0.14 TCGA-BA-5152-01 13 98086811 98086811 C T RAP2A Silent p.I29I 0.16 TCGA-BA-5152-01 14 22192180 22192180 G A TRAV3 Silent p.L15L 0.04 TCGA-BA-5152-01 14 23371581 23371581 G T RBM23 Missense_Mutation p.S314Y 0.30 deleterious(0) possibly_damaging(0.884) TCGA-BA-5152-01 14 23884362 23884362 C A MYH7 Nonsense_Mutation p.E1801* 0.12 TCGA-BA-5152-01 14 24606752 24606752 G C PSME1 Missense_Mutation p.K90N 0.14 tolerated(0.14) possibly_damaging(0.575) TCGA-BA-5152-01 14 24618025 24618025 G C RNF31 Missense_Mutation p.E191Q 0.16 tolerated(0.45) benign(0.179) TCGA-BA-5152-01 14 35593114 35593114 C T KIAA0391 Silent p.I221I 0.33 TCGA-BA-5152-01 14 44974621 44974621 C T FSCB Missense_Mutation p.E524K 0.12 tolerated(0.19) benign(0.107) TCGA-BA-5152-01 14 50044522 50044522 G C RPS29 3'UTR 0.28 TCGA-BA-5152-01 14 57082694 57082694 C A TMEM260 Nonsense_Mutation p.S297* 0.24 TCGA-BA-5152-01 14 57699411 57699411 G C EXOC5 Silent p.L304L 0.05 TCGA-BA-5152-01 14 65259779 65259779 C G SPTB Missense_Mutation p.E868Q 0.30 deleterious(0.01) possibly_damaging(0.788) TCGA-BA-5152-01 14 75415234 75415234 G C PGF Missense_Mutation p.S123C 0.15 tolerated(0.1) benign(0.026) TCGA-BA-5152-01 14 94935785 94935785 C G SERPINA9 Missense_Mutation p.K149N 0.16 tolerated(0.83) benign(0.032) TCGA-BA-5152-01 15 100514576 100514576 C T ADAMTS17 3'UTR 0.13 TCGA-BA-5152-01 15 23811327 23811327 C T MKRN3 Missense_Mutation p.S133L 0.19 tolerated(0.68) benign(0.002) TCGA-BA-5152-01 15 31220836 31220836 G A FAN1 Missense_Mutation p.D857N 0.14 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 15 32393509 32393509 G C CHRNA7 Missense_Mutation p.E96Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-BA-5152-01 15 40257961 40257961 G C EIF2AK4 Missense_Mutation p.E312Q 0.21 deleterious(0.02) possibly_damaging(0.801) TCGA-BA-5152-01 15 42632913 42632913 G A GANC Missense_Mutation p.E705K 0.22 benign(0.035) TCGA-BA-5152-01 15 43620956 43620956 C T LCMT2 Missense_Mutation p.D578N 0.30 tolerated(0.08) benign(0.392) TCGA-BA-5152-01 15 43621022 43621022 C G LCMT2 Missense_Mutation p.E556Q 0.06 tolerated(0.15) probably_damaging(0.992) TCGA-BA-5152-01 15 43653641 43653641 C T ZSCAN29 Missense_Mutation p.G730E 0.19 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 15 45415129 45415129 G A DUOXA1 Silent p.I28I 0.32 TCGA-BA-5152-01 15 45695714 45695714 G C SPATA5L1 Missense_Mutation p.E363Q 0.10 deleterious(0) probably_damaging(0.986) TCGA-BA-5152-01 15 50830917 50830917 G A USP50 Silent p.F264F 0.55 TCGA-BA-5152-01 15 59499805 59499805 G C LDHAL6B Missense_Mutation p.L222F 0.17 tolerated(0.14) benign(0.066) TCGA-BA-5152-01 15 59499959 59499959 G C LDHAL6B Missense_Mutation p.E274Q 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BA-5152-01 15 65412134 65412134 C G PDCD7 Missense_Mutation p.E390Q 0.16 tolerated(0.08) probably_damaging(0.974) TCGA-BA-5152-01 15 66781559 66781559 C G MAP2K1 Missense_Mutation p.P323A 0.23 deleterious(0) probably_damaging(0.996) TCGA-BA-5152-01 15 69733362 69733362 G C KIF23 Missense_Mutation p.E775Q 0.10 tolerated(0.08) possibly_damaging(0.704) TCGA-BA-5152-01 15 72499611 72499611 C T PKM Missense_Mutation p.E282K 0.24 deleterious(0) possibly_damaging(0.561) TCGA-BA-5152-01 15 72608214 72608214 G A CELF6 Missense_Mutation p.A106V 0.32 deleterious(0.02) benign(0.364) TCGA-BA-5152-01 15 72691140 72691140 A G TMEM202 Silent p.P76P 0.32 TCGA-BA-5152-01 15 74477352 74477352 G C STRA6 Missense_Mutation p.L418V 0.21 tolerated(0.27) benign(0.276) TCGA-BA-5152-01 15 75044189 75044189 G C CYP1A2 Missense_Mutation p.E346Q 0.20 deleterious(0.05) possibly_damaging(0.887) TCGA-BA-5152-01 15 75047131 75047131 G C CYP1A2 Splice_Site p.X418_splice 0.14 TCGA-BA-5152-01 15 77907918 77907918 C A LINGO1 Nonsense_Mutation p.E111* 0.38 TCGA-BA-5152-01 15 81171075 81171075 C - KIAA1199 Frame_Shift_Del p.P37Lfs*64 0.11 TCGA-BA-5152-01 15 82575272 82575272 G C FAM154B Missense_Mutation p.E356Q 0.15 tolerated(0.15) benign(0.159) TCGA-BA-5152-01 15 83932315 83932315 G A BNC1 Missense_Mutation p.S563L 0.13 deleterious(0.04) probably_damaging(0.982) TCGA-BA-5152-01 15 89195491 89195491 C T ISG20 Missense_Mutation p.R127C 0.10 tolerated(0.2) benign(0.051) TCGA-BA-5152-01 16 20487070 20487070 G A ACSM2A Missense_Mutation p.R358Q 0.10 deleterious(0.04) benign(0.071) TCGA-BA-5152-01 16 2070649 2070649 C G NPW 3'UTR 0.40 TCGA-BA-5152-01 16 23113736 23113736 C G USP31 Missense_Mutation p.D380H 0.28 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 16 2547031 2547031 C T RP11-20I23.1 Silent p.L294L 0.28 TCGA-BA-5152-01 16 28847937 28847937 G A ATXN2L Intron 0.21 TCGA-BA-5152-01 16 29934634 29934634 G C KCTD13 Silent p.L97L 0.14 TCGA-BA-5152-01 16 30569449 30569449 C G ZNF764 Missense_Mutation p.E19Q 0.46 tolerated(0.59) benign(0.012) TCGA-BA-5152-01 16 30793399 30793399 C A ZNF629 Missense_Mutation p.K750N 0.26 deleterious(0.03) benign(0.201) TCGA-BA-5152-01 16 31049870 31049870 G A STX4 Missense_Mutation p.E202K 0.26 deleterious(0) probably_damaging(0.992) TCGA-BA-5152-01 16 31213912 31213912 C G PYCARD Missense_Mutation p.E34Q 0.38 tolerated(0.07) probably_damaging(0.947) TCGA-BA-5152-01 16 50666202 50666202 G A NKD1 Missense_Mutation p.D236N 0.32 tolerated(0.32) benign(0.234) TCGA-BA-5152-01 16 57761225 57761225 G A CCDC135 Silent p.L700L 0.29 TCGA-BA-5152-01 16 66766169 66766169 G A DYNC1LI2 Intron 0.33 TCGA-BA-5152-01 16 66975679 66975679 G A CES2 Silent p.R419R 0.24 TCGA-BA-5152-01 16 67469873 67469873 C T HSD11B2 Silent p.L164L 0.23 TCGA-BA-5152-01 16 67516684 67516684 C T AGRP Missense_Mutation p.R85H 0.20 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 16 68160439 68160439 C T NFATC3 Missense_Mutation p.H443Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-BA-5152-01 16 706411 706411 C G WDR90 Nonsense_Mutation p.Y692* 0.19 TCGA-BA-5152-01 16 74394602 74394602 G A RP11-252A24.2 RNA 0.09 TCGA-BA-5152-01 16 75203755 75203755 C T ZFP1 Silent p.F249F 0.32 TCGA-BA-5152-01 16 81145966 81145966 G A PKD1L2 RNA 0.33 TCGA-BA-5152-01 16 836894 836894 G A RPUSD1 Silent p.L148L 0.24 TCGA-BA-5152-01 16 84328534 84328534 C G WFDC1 5'UTR 0.25 TCGA-BA-5152-01 16 8891690 8891690 G A PMM2 5'UTR 0.31 TCGA-BA-5152-01 16 88925146 88925146 C A TRAPPC2L Silent p.V51V 0.22 TCGA-BA-5152-01 17 10206785 10206785 C T MYH13 Missense_Mutation p.E1833K 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-BA-5152-01 17 17898417 17898417 C A LRRC48 Silent p.L272L 0.52 TCGA-BA-5152-01 17 21208407 21208407 C T MAP2K3 Silent p.V247V 0.17 TCGA-BA-5152-01 17 28890473 28890473 G A TBC1D29 3'UTR 0.28 TCGA-BA-5152-01 17 29220740 29220740 G A ATAD5 Silent p.K1623K 0.36 TCGA-BA-5152-01 17 30661853 30661853 C G C17orf75 Missense_Mutation p.L225F 0.31 deleterious(0) probably_damaging(0.992) TCGA-BA-5152-01 17 30662447 30662447 C G C17orf75 Missense_Mutation p.E188D 0.15 tolerated(0.07) benign(0.206) TCGA-BA-5152-01 17 33316674 33316674 C T LIG3 Missense_Mutation p.S294L 0.17 deleterious(0.01) possibly_damaging(0.589) TCGA-BA-5152-01 17 37264415 37264415 C T PLXDC1 Missense_Mutation p.G185S 0.33 tolerated(1) benign(0.104) TCGA-BA-5152-01 17 38285648 38285648 G C MSL1 Missense_Mutation p.L118F 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-BA-5152-01 17 41002418 41002418 C T AOC2 3'UTR 0.46 TCGA-BA-5152-01 17 41599574 41599574 C T DHX8 Silent p.L1141L 0.19 TCGA-BA-5152-01 17 43517535 43517535 G A PLEKHM1 Silent p.L965L 0.12 TCGA-BA-5152-01 17 56342211 56342211 C G LPO Silent p.R465R 0.13 TCGA-BA-5152-01 17 56440747 56440747 C T RNF43 Silent p.L157L 0.09 TCGA-BA-5152-01 17 66033573 66033573 G A KPNA2 Missense_Mutation p.D59N 0.46 tolerated(0.05) benign(0.098) TCGA-BA-5152-01 17 67150091 67150091 G A ABCA10 Silent p.F1282F 0.18 TCGA-BA-5152-01 17 71228289 71228289 G A FAM104A Missense_Mutation p.L53F 0.14 tolerated_low_confidence(0.11) benign(0.319) TCGA-BA-5152-01 17 72469964 72469964 C T CD300A Silent p.L110L 0.10 TCGA-BA-5152-01 17 74071153 74071153 C T GALR2 Silent p.F63F 0.13 TCGA-BA-5152-01 17 74071276 74071276 C T GALR2 Silent p.L104L 0.16 TCGA-BA-5152-01 17 74475233 74475233 C T RHBDF2 Silent p.L162L 0.12 TCGA-BA-5152-01 17 75398526 75398526 C T SEPT9 Silent p.I154I 0.41 TCGA-BA-5152-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.38 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 17 78449452 78449452 C G NPTX1 Missense_Mutation p.D171H 0.26 deleterious(0.05) possibly_damaging(0.767) TCGA-BA-5152-01 17 79094803 79094803 C T AATK Missense_Mutation p.R978Q 0.13 tolerated(0.89) benign(0.003) TCGA-BA-5152-01 17 80054216 80054216 C T FASN Missense_Mutation p.D36N 0.12 deleterious(0.02) benign(0.344) TCGA-BA-5152-01 17 80141798 80141798 C T CCDC57 Missense_Mutation p.D355N 0.42 deleterious(0) possibly_damaging(0.836) TCGA-BA-5152-01 17 960284 960284 G C ABR Missense_Mutation p.F480L 0.41 tolerated(0.09) benign(0.073) TCGA-BA-5152-01 18 18566941 18566941 C G ROCK1 Missense_Mutation p.L758F 0.07 deleterious(0.04) benign(0.049) TCGA-BA-5152-01 18 18586476 18586476 G A ROCK1 Missense_Mutation p.S574L 0.28 tolerated(0.47) benign(0.071) TCGA-BA-5152-01 18 22805754 22805754 G A ZNF521 Nonsense_Mutation p.Q710* 0.20 TCGA-BA-5152-01 18 32843968 32843968 C G ZSCAN30 Missense_Mutation p.E117Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-BA-5152-01 18 34408782 34408782 C T TPGS2 5'UTR 0.21 TCGA-BA-5152-01 18 44595607 44595607 C T KATNAL2 Missense_Mutation p.T209I 0.21 deleterious(0) possibly_damaging(0.772) TCGA-BA-5152-01 18 7232012 7232012 C G LRRC30 Missense_Mutation p.F292L 0.31 tolerated(0.15) benign(0.03) TCGA-BA-5152-01 19 10085036 10085036 G T COL5A3 Missense_Mutation p.Q1131K 0.26 possibly_damaging(0.904) TCGA-BA-5152-01 19 10226446 10226446 C G EIF3G Missense_Mutation p.E252Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-BA-5152-01 19 10395703 10395703 C T ICAM1 Silent p.L475L 0.32 TCGA-BA-5152-01 19 10402810 10402810 C T ICAM5 Missense_Mutation p.S258L 0.05 tolerated(0.07) benign(0.011) TCGA-BA-5152-01 19 10450324 10450324 G C ICAM3 5'UTR 0.39 TCGA-BA-5152-01 19 11354276 11354276 C T DOCK6 Silent p.V405V 0.22 TCGA-BA-5152-01 19 12256165 12256165 C T ZNF625 Missense_Mutation p.E356K 0.34 deleterious(0.04) possibly_damaging(0.89) TCGA-BA-5152-01 19 13226280 13226280 C T TRMT1 Missense_Mutation p.E152K 0.21 tolerated(0.22) benign(0.014) TCGA-BA-5152-01 19 1556393 1556393 C G MEX3D Missense_Mutation p.K375N 0.20 tolerated(0.05) possibly_damaging(0.447) TCGA-BA-5152-01 19 1621849 1621849 C T TCF3 Missense_Mutation p.D315N 0.17 deleterious(0.02) possibly_damaging(0.594) TCGA-BA-5152-01 19 1818554 1818554 G A REXO1 Silent p.L981L 0.14 TCGA-BA-5152-01 19 20307969 20307969 G C ZNF486 Missense_Mutation p.Q150H 0.26 tolerated(0.14) benign(0.003) TCGA-BA-5152-01 19 23544945 23544945 G A ZNF91 Missense_Mutation p.S279L 0.12 deleterious(0.03) possibly_damaging(0.637) TCGA-BA-5152-01 19 2717417 2717417 C T DIRAS1 Missense_Mutation p.V130M 0.32 deleterious(0.02) possibly_damaging(0.592) TCGA-BA-5152-01 19 38853162 38853162 C T CATSPERG Silent p.F768F 0.13 TCGA-BA-5152-01 19 40368869 40368869 C T FCGBP Missense_Mutation p.G4160D 0.11 probably_damaging(0.982) TCGA-BA-5152-01 19 40580009 40580009 G C ZNF780A 3'UTR 0.12 TCGA-BA-5152-01 19 4099284 4099284 G C MAP2K2 Missense_Mutation p.I278M 0.19 tolerated(0.31) benign(0.023) TCGA-BA-5152-01 19 422154 422154 C T SHC2 Missense_Mutation p.E538K 0.29 deleterious(0) probably_damaging(0.993) TCGA-BA-5152-01 19 42737444 42737444 G A GSK3A Silent p.I332I 0.33 TCGA-BA-5152-01 19 45593559 45593559 C T GEMIN7 Missense_Mutation p.R63W 0.08 deleterious(0) probably_damaging(0.989) TCGA-BA-5152-01 19 45805791 45805791 C A MARK4 Missense_Mutation p.F694L 0.30 deleterious(0) benign(0.011) TCGA-BA-5152-01 19 47226133 47226133 C T STRN4 Missense_Mutation p.D621N 0.23 tolerated(0.48) benign(0.007) TCGA-BA-5152-01 19 47278850 47278850 C T SLC1A5 Missense_Mutation p.E515K 0.20 deleterious(0.02) benign(0.341) TCGA-BA-5152-01 19 48229328 48229328 C T EHD2 Silent p.I254I 0.46 TCGA-BA-5152-01 19 50721024 50721024 G T MYH14 Silent p.L186L 0.32 TCGA-BA-5152-01 19 50962172 50962172 C G MYBPC2 Intron 0.33 TCGA-BA-5152-01 19 51958028 51958028 G C SIGLEC8 Nonsense_Mutation p.S353* 0.10 TCGA-BA-5152-01 19 52468574 52468574 C G ZNF350 Missense_Mutation p.E378Q 0.21 deleterious(0.03) possibly_damaging(0.548) TCGA-BA-5152-01 19 52497896 52497896 T A ZNF615 Missense_Mutation p.N156Y 0.08 tolerated(1) possibly_damaging(0.667) TCGA-BA-5152-01 19 54225507 54225507 G A MIR520G RNA 0.06 TCGA-BA-5152-01 19 54600369 54600369 C G OSCAR Missense_Mutation p.L55F 0.19 tolerated(0.09) probably_damaging(0.989) TCGA-BA-5152-01 19 54611809 54611809 C G NDUFA3 3'Flank 0.32 TCGA-BA-5152-01 19 55858856 55858856 C G SUV420H2 3'UTR 0.41 TCGA-BA-5152-01 19 56539850 56539850 G A NLRP5 Missense_Mutation p.E751K 0.22 tolerated(0.11) benign(0.232) TCGA-BA-5152-01 19 5664440 5664440 G A SAFB Missense_Mutation p.R775Q 0.10 deleterious(0) unknown(0) TCGA-BA-5152-01 19 57642360 57642360 G A USP29 Missense_Mutation p.E773K 0.41 tolerated(0.32) probably_damaging(0.945) TCGA-BA-5152-01 19 59060728 59060728 C A TRIM28 Missense_Mutation p.P565T 0.21 deleterious(0.04) possibly_damaging(0.72) TCGA-BA-5152-01 19 621366 621366 C A POLRMT Nonsense_Mutation p.E778* 0.27 TCGA-BA-5152-01 19 6380266 6380266 G A GTF2F1 3'UTR 0.12 TCGA-BA-5152-01 19 6471307 6471307 C T DENND1C Missense_Mutation p.R420Q 0.38 deleterious(0.05) benign(0.397) TCGA-BA-5152-01 1 111990152 111990152 G A WDR77 Silent p.V116V 0.19 TCGA-BA-5152-01 1 112303904 112303904 C T DDX20 Missense_Mutation p.S340L 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-BA-5152-01 1 12726206 12726206 C G AADACL4 Missense_Mutation p.F228L 0.36 tolerated(0.95) benign(0.002) TCGA-BA-5152-01 1 1290234 1290234 G C MXRA8 Missense_Mutation p.I259M 0.23 deleterious(0) probably_damaging(0.999) TCGA-BA-5152-01 1 1417591 1417591 C T ATAD3B Silent p.R196R 0.50 TCGA-BA-5152-01 1 148012500 148012500 C G NBPF14 Intron 0.12 TCGA-BA-5152-01 1 149784945 149784945 C T HIST2H3D Missense_Mutation p.E98K 0.19 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BA-5152-01 1 149859072 149859089 AATTACTTGTTCTTGCCA - HIST2H2AB Missense_Mutation 0.12 TCGA-BA-5152-01 1 151317305 151317305 C A RFX5 Silent p.L84L 0.12 TCGA-BA-5152-01 1 152079998 152079998 C T TCHH Missense_Mutation p.G1899R 0.20 benign(0.051) TCGA-BA-5152-01 1 152282518 152282518 G A FLG Missense_Mutation p.S1615F 0.28 possibly_damaging(0.485) TCGA-BA-5152-01 1 152733229 152733229 G C KPRP Missense_Mutation p.D389H 0.33 deleterious_low_confidence(0.01) probably_damaging(0.912) TCGA-BA-5152-01 1 154144523 154144523 C G TPM3 Intron 0.12 TCGA-BA-5152-01 1 154988249 154988249 G C ZBTB7B Missense_Mutation p.E405D 0.16 deleterious(0) probably_damaging(0.943) TCGA-BA-5152-01 1 155026830 155026830 G C ADAM15 Missense_Mutation p.E154Q 0.21 tolerated(0.08) probably_damaging(0.967) TCGA-BA-5152-01 1 155279943 155279943 G A FDPS Missense_Mutation p.E96K 0.22 tolerated(0.08) benign(0.006) TCGA-BA-5152-01 1 155629559 155629559 C T YY1AP1 Silent p.P852P 0.18 TCGA-BA-5152-01 1 16461683 16461683 C G EPHA2 Missense_Mutation p.G477A 0.30 tolerated(0.29) benign(0.012) TCGA-BA-5152-01 1 16464404 16464404 G C EPHA2 Nonsense_Mutation p.S419* 0.17 TCGA-BA-5152-01 1 16475323 16475323 C T EPHA2 Missense_Mutation p.E125K 0.34 deleterious(0) probably_damaging(0.996) TCGA-BA-5152-01 1 165322354 165322354 G A LMX1A Silent p.F74F 0.14 TCGA-BA-5152-01 1 1721851 1721851 C T GNB1 Missense_Mutation p.D228N 0.06 deleterious(0) probably_damaging(0.986) TCGA-BA-5152-01 1 172348233 172348233 C T DNM3 Missense_Mutation p.R657C 0.16 deleterious(0) probably_damaging(0.99) TCGA-BA-5152-01 1 17264170 17264170 G C CROCC Missense_Mutation p.E410Q 0.23 benign(0) TCGA-BA-5152-01 1 175048789 175048789 G C TNN Missense_Mutation p.D244H 0.14 deleterious(0.04) probably_damaging(0.972) TCGA-BA-5152-01 1 179311320 179311320 G C SOAT1 Missense_Mutation p.E284D 0.17 tolerated(0.48) benign(0.026) TCGA-BA-5152-01 1 180080147 180080147 G C CEP350 Missense_Mutation p.E3069Q 0.16 probably_damaging(0.999) TCGA-BA-5152-01 1 18023375 18023375 G A ARHGEF10L Missense_Mutation p.G1114R 0.24 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 1 183543724 183543724 C G NCF2 Missense_Mutation p.K133N 0.26 tolerated(0.05) possibly_damaging(0.496) TCGA-BA-5152-01 1 184787891 184787891 C G FAM129A Missense_Mutation p.E352Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-BA-5152-01 1 19407997 19407997 C G UBR4 Missense_Mutation p.E5027Q 0.32 probably_damaging(0.982) TCGA-BA-5152-01 1 19446699 19446699 G A UBR4 Missense_Mutation p.H3429Y 0.10 possibly_damaging(0.775) TCGA-BA-5152-01 1 196395022 196395022 G C KCNT2 Missense_Mutation p.Q361E 0.34 deleterious(0) probably_damaging(0.966) TCGA-BA-5152-01 1 200801916 200801916 G A CAMSAP2 Silent p.L290L 0.19 TCGA-BA-5152-01 1 209969798 209969798 C G IRF6 Missense_Mutation p.E92Q 0.33 deleterious(0.01) probably_damaging(1) TCGA-BA-5152-01 1 212977943 212977943 T C TATDN3 Missense_Mutation p.V146A 0.12 deleterious(0) probably_damaging(0.952) TCGA-BA-5152-01 1 231489093 231489093 G A SPRTN Missense_Mutation p.E486K 0.10 tolerated_low_confidence(0.54) benign(0.003) TCGA-BA-5152-01 1 232649741 232649741 G A SIPA1L2 Missense_Mutation p.H449Y 0.24 tolerated(0.24) probably_damaging(0.995) TCGA-BA-5152-01 1 243668546 243668546 G C AKT3 3'UTR 0.31 TCGA-BA-5152-01 1 248224207 248224207 C G OR2L3 Missense_Mutation p.T75S 0.15 tolerated(0.07) benign(0.314) TCGA-BA-5152-01 1 248263623 248263623 C T OR2L13 3'UTR 0.15 TCGA-BA-5152-01 1 249211312 249211312 C T PGBD2 Nonsense_Mutation p.Q177* 0.14 TCGA-BA-5152-01 1 27272172 27272172 G A NUDC Silent p.L313L 0.06 TCGA-BA-5152-01 1 27877465 27877465 C T AHDC1 Missense_Mutation p.D388N 0.27 tolerated(0.25) possibly_damaging(0.728) TCGA-BA-5152-01 1 28211959 28211959 C G THEMIS2 Missense_Mutation p.L625V 0.26 tolerated(0.36) benign(0.001) TCGA-BA-5152-01 1 32841914 32841914 C G BSDC1 Missense_Mutation p.E386Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-BA-5152-01 1 33234274 33234274 G A KIAA1522 Missense_Mutation p.E162K 0.17 deleterious(0.04) unknown(0) TCGA-BA-5152-01 1 33234319 33234319 G C KIAA1522 Missense_Mutation p.E177Q 0.14 tolerated(0.06) unknown(0) TCGA-BA-5152-01 1 3427384 3427384 G A MEGF6 Silent p.A399A 0.41 TCGA-BA-5152-01 1 35334493 35334493 G A DLGAP3 Missense_Mutation p.T733M 0.46 deleterious(0.01) probably_damaging(0.942) TCGA-BA-5152-01 1 36024783 36024783 G A NCDN Missense_Mutation p.E37K 0.21 tolerated(0.24) benign(0.022) TCGA-BA-5152-01 1 36506033 36506033 G C AGO3 Missense_Mutation p.R721S 0.27 tolerated(0.14) benign(0.026) TCGA-BA-5152-01 1 39340099 39340099 G A GJA9 3'UTR 0.54 TCGA-BA-5152-01 1 40367209 40367209 G C MYCL Intron 0.22 TCGA-BA-5152-01 1 44435812 44435812 G A DPH2 5'UTR 0.38 TCGA-BA-5152-01 1 45796983 45796983 G C MUTYH Missense_Mutation p.I446M 0.14 deleterious(0) probably_damaging(0.992) TCGA-BA-5152-01 1 47515108 47515108 G C CYP4X1 Missense_Mutation p.L429F 0.27 tolerated(0.27) benign(0.166) TCGA-BA-5152-01 1 67155939 67155939 G A SGIP1 Missense_Mutation p.E504K 0.28 deleterious(0.01) possibly_damaging(0.899) TCGA-BA-5152-01 1 67558949 67558949 G C C1orf141 Silent p.L314L 0.24 TCGA-BA-5152-01 1 70505167 70505167 G C LRRC7 Silent p.V1182V 0.22 TCGA-BA-5152-01 1 78163136 78163136 C T USP33 Missense_Mutation p.E899K 0.23 tolerated(0.08) probably_damaging(0.998) TCGA-BA-5152-01 1 90178699 90178699 G C LRRC8C Missense_Mutation p.K190N 0.16 tolerated(0.32) benign(0.051) TCGA-BA-5152-01 1 94528713 94528713 C T ABCA4 Missense_Mutation p.R572Q 0.27 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 20 1426360 1426360 G A NSFL1C Missense_Mutation p.R303W 0.09 deleterious(0.03) possibly_damaging(0.829) TCGA-BA-5152-01 20 2474452 2474452 C T ZNF343 Silent p.K30K 0.17 TCGA-BA-5152-01 20 2474463 2474463 C G ZNF343 Missense_Mutation p.E27Q 0.17 tolerated(0.14) benign(0.054) TCGA-BA-5152-01 20 31647253 31647253 G A BPIFB3 Silent p.L117L 0.39 TCGA-BA-5152-01 20 3529964 3529964 C G ATRN Nonsense_Mutation p.S364* 0.16 TCGA-BA-5152-01 20 36789876 36789876 C T TGM2 Missense_Mutation p.E46K 0.11 tolerated(0.81) benign(0.002) TCGA-BA-5152-01 20 43251500 43251500 G A ADA Silent p.N250N 0.16 TCGA-BA-5152-01 20 44517447 44517447 C A NEURL2 Missense_Mutation p.D270Y 0.06 deleterious(0) possibly_damaging(0.882) TCGA-BA-5152-01 20 55982766 55982766 C T RBM38 Missense_Mutation p.S195L 0.27 deleterious(0) benign(0.086) TCGA-BA-5152-01 20 61846954 61846954 C G YTHDF1 Splice_Site p.X10_splice 0.39 TCGA-BA-5152-01 20 62038284 62038284 C A KCNQ2 Nonsense_Mutation p.E778* 0.31 TCGA-BA-5152-01 20 62203596 62203596 G C HELZ2 Missense_Mutation p.T48S 0.56 tolerated(0.07) possibly_damaging(0.692) TCGA-BA-5152-01 21 18931416 18931416 G A CXADR Missense_Mutation p.D180N 0.20 tolerated(0.39) benign(0.003) TCGA-BA-5152-01 21 34931614 34931614 G A SON Missense_Mutation p.E2134K 0.07 unknown(0) TCGA-BA-5152-01 21 40714934 40714934 G C HMGN1 3'UTR 0.36 TCGA-BA-5152-01 21 41684117 41684117 C G DSCAM Silent p.T651T 0.20 TCGA-BA-5152-01 22 18769234 18769234 C G GGT3P RNA 0.16 TCGA-BA-5152-01 22 19463117 19463117 G C UFD1L Missense_Mutation p.F4L 0.16 tolerated(0.09) benign(0.325) TCGA-BA-5152-01 22 20079432 20079432 C G DGCR8 Missense_Mutation p.I515M 0.22 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 22 20102116 20102116 G C TRMT2A Missense_Mutation p.S405C 0.18 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 22 26829810 26829810 C G ASPHD2 Missense_Mutation p.H77D 0.22 deleterious_low_confidence(0.02) benign(0.143) TCGA-BA-5152-01 22 30691787 30691787 C T TBC1D10A Missense_Mutation p.E162K 0.16 tolerated(0.05) benign(0.326) TCGA-BA-5152-01 22 38119504 38119504 C T TRIOBP Missense_Mutation p.S314F 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-BA-5152-01 22 38202088 38202088 G A H1F0 Silent p.V179V 0.30 TCGA-BA-5152-01 22 38349119 38349119 C G C22orf23 Missense_Mutation p.G13A 0.20 tolerated(0.11) benign(0.199) TCGA-BA-5152-01 22 38945946 38945946 C G DMC1 Missense_Mutation p.D160H 0.16 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 22 39138314 39138314 G A SUN2 Missense_Mutation p.R375C 0.16 tolerated(0.14) possibly_damaging(0.696) TCGA-BA-5152-01 22 40757105 40757105 G C ADSL Intron 0.20 TCGA-BA-5152-01 22 41613186 41613186 C T L3MBTL2 Missense_Mutation p.P194S 0.30 tolerated(0.19) benign(0.249) TCGA-BA-5152-01 22 41613200 41613200 C T L3MBTL2 Silent p.F198F 0.26 TCGA-BA-5152-01 22 41925317 41925317 C T POLR3H Silent p.L195L 0.19 TCGA-BA-5152-01 2 112989456 112989456 G A ZC3H8 Missense_Mutation p.H268Y 0.18 deleterious(0) possibly_damaging(0.677) TCGA-BA-5152-01 2 113322029 113322029 G C POLR1B Missense_Mutation p.D567H 0.16 tolerated(0.16) benign(0.005) TCGA-BA-5152-01 2 113830306 113830306 G A IL1F10 5'UTR 0.12 TCGA-BA-5152-01 2 12858450 12858450 C G TRIB2 Missense_Mutation p.S6C 0.10 deleterious(0.01) probably_damaging(0.921) TCGA-BA-5152-01 2 143790866 143790866 C G KYNU Silent p.V339V 0.05 TCGA-BA-5152-01 2 170115654 170115654 G T LRP2 Silent p.L798L 0.36 TCGA-BA-5152-01 2 172822934 172822934 G C HAT1 Missense_Mutation p.E206Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-BA-5152-01 2 176948129 176948129 G A EVX2 Missense_Mutation p.R126C 0.32 tolerated(0.15) benign(0.02) TCGA-BA-5152-01 2 178415907 178415907 C G TTC30B Missense_Mutation p.E529Q 0.30 deleterious(0.04) benign(0.136) TCGA-BA-5152-01 2 179428814 179428814 G C TTN Missense_Mutation p.L27349V 0.14 TCGA-BA-5152-01 2 179572396 179572396 G A TTN Missense_Mutation p.S9633L 0.32 TCGA-BA-5152-01 2 179611231 179611231 G A TTN Intron 0.27 TCGA-BA-5152-01 2 202025553 202025553 G A CFLAR Missense_Mutation p.E398K 0.28 tolerated(0.11) probably_damaging(0.967) TCGA-BA-5152-01 2 202625889 202625889 G A ALS2 Silent p.L276L 0.30 TCGA-BA-5152-01 2 21226113 21226113 C T APOB Missense_Mutation p.E4061K 0.26 probably_damaging(0.994) TCGA-BA-5152-01 2 219222441 219222441 C T C2orf62 Silent p.C101C 0.23 TCGA-BA-5152-01 2 220405145 220405145 G C CHPF Missense_Mutation p.L430V 0.51 tolerated(1) benign(0.002) TCGA-BA-5152-01 2 232576621 232576621 G T PTMA Nonsense_Mutation p.E48* 0.40 TCGA-BA-5152-01 2 23980730 23980730 G A ATAD2B Silent p.I1212I 0.23 TCGA-BA-5152-01 2 24255769 24255769 G A C2orf44 Silent p.L622L 0.23 TCGA-BA-5152-01 2 27263361 27263361 G A TMEM214 Missense_Mutation p.C647Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-BA-5152-01 2 29063067 29063067 C T SPDYA Silent p.I194I 0.16 TCGA-BA-5152-01 2 29294902 29294902 C T C2orf71 Silent p.E742E 0.29 TCGA-BA-5152-01 2 31598258 31598258 C T XDH Silent p.E530E 0.24 TCGA-BA-5152-01 2 37319076 37319076 C T GPATCH11 Missense_Mutation p.H112Y 0.19 tolerated(0.07) benign(0.321) TCGA-BA-5152-01 2 39406448 39406448 C T CDKL4 Missense_Mutation p.M269I 0.13 tolerated(0.33) benign(0.219) TCGA-BA-5152-01 2 45169453 45169453 C T SIX3 Silent p.S70S 0.33 TCGA-BA-5152-01 2 46770215 46770215 C T RHOQ Silent p.L10L 0.11 TCGA-BA-5152-01 2 46986870 46986870 G T SOCS5 Missense_Mutation p.G401C 0.24 deleterious(0) probably_damaging(0.977) TCGA-BA-5152-01 2 48063095 48063095 C T FBXO11 Missense_Mutation p.M211I 0.10 tolerated(0.11) benign(0.011) TCGA-BA-5152-01 2 54852072 54852072 G A SPTBN1 Silent p.L438L 0.05 TCGA-BA-5152-01 2 55471167 55471167 C G MTIF2 Missense_Mutation p.E437Q 0.17 deleterious(0.01) possibly_damaging(0.721) TCGA-BA-5152-01 2 55747049 55747049 G A CCDC104 Missense_Mutation p.E38K 0.34 tolerated(0.79) benign(0.232) TCGA-BA-5152-01 2 67630409 67630409 G C ETAA1 Missense_Mutation p.D199H 0.31 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 2 7023543 7023543 C G RSAD2 Missense_Mutation p.Q130E 0.11 tolerated(0.08) benign(0.004) TCGA-BA-5152-01 2 71043679 71043679 C A CLEC4F Missense_Mutation p.L278F 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-BA-5152-01 2 73303223 73303223 C T RAB11FIP5 Silent p.L552L 0.09 TCGA-BA-5152-01 2 73959362 73959362 G C TPRKB Silent p.L64L 0.28 TCGA-BA-5152-01 2 74657432 74657432 C T RTKN Missense_Mutation p.M164I 0.16 deleterious(0.01) benign(0.217) TCGA-BA-5152-01 2 75929407 75929407 C G GCFC2 Missense_Mutation p.E179D 0.25 tolerated(0.55) probably_damaging(0.924) TCGA-BA-5152-01 2 76975904 76975904 C G LRRTM4 Missense_Mutation p.E564Q 0.21 deleterious_low_confidence(0.04) benign(0.032) TCGA-BA-5152-01 2 95815860 95815860 C T ZNF514 Missense_Mutation p.E124K 0.32 deleterious(0.02) benign(0.03) TCGA-BA-5152-01 2 95818421 95818421 G A ZNF514 Missense_Mutation p.S72L 0.27 tolerated(0.2) benign(0.001) TCGA-BA-5152-01 2 9630344 9630344 G A ADAM17 Missense_Mutation p.R813C 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-BA-5152-01 2 97361634 97361634 G C FER1L5 RNA 0.18 TCGA-BA-5152-01 3 10188211 10188211 C T VHL Silent p.L118L 0.28 TCGA-BA-5152-01 3 10392202 10392202 G A ATP2B2 Silent p.G732G 0.25 TCGA-BA-5152-01 3 113955429 113955429 C G ZNF80 Missense_Mutation p.E165Q 0.09 deleterious(0.03) benign(0.04) TCGA-BA-5152-01 3 127390296 127390296 C G PODXL2 Missense_Mutation p.S482C 0.20 deleterious(0) probably_damaging(0.981) TCGA-BA-5152-01 3 12983123 12983123 G C IQSEC1 Nonsense_Mutation p.S103* 0.19 TCGA-BA-5152-01 3 130300643 130300643 G C COL6A6 Silent p.L1262L 0.26 TCGA-BA-5152-01 3 133496034 133496034 G A TF Missense_Mutation p.E672K 0.24 tolerated(0.58) benign(0.099) TCGA-BA-5152-01 3 136664663 136664663 C A NCK1 Missense_Mutation p.F155L 0.10 deleterious(0) possibly_damaging(0.897) TCGA-BA-5152-01 3 143691432 143691432 C G C3orf58 Silent p.L86L 0.10 TCGA-BA-5152-01 3 145828128 145828128 C G PLOD2 Missense_Mutation p.R149T 0.25 tolerated(0.38) benign(0.008) TCGA-BA-5152-01 3 14769987 14769987 G A C3orf20 Missense_Mutation p.E578K 0.19 tolerated(0.13) possibly_damaging(0.713) TCGA-BA-5152-01 3 151155923 151155923 C T IGSF10 Silent p.R2142R 0.29 TCGA-BA-5152-01 3 15512102 15512102 C T COLQ Missense_Mutation p.E220K 0.25 deleterious(0.03) unknown(0) TCGA-BA-5152-01 3 15686312 15686312 C T BTD Silent p.L317L 0.23 TCGA-BA-5152-01 3 173999147 173999147 G A NLGN1 3'UTR 0.29 TCGA-BA-5152-01 3 179481862 179481862 C G USP13 Missense_Mutation p.S722C 0.23 deleterious(0.03) possibly_damaging(0.489) TCGA-BA-5152-01 3 189582183 189582183 G A TP63 Missense_Mutation p.E248K 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-BA-5152-01 3 189586432 189586432 G A TP63 Silent p.R352R 0.21 TCGA-BA-5152-01 3 196674441 196674441 C G PIGZ Missense_Mutation p.E443Q 0.08 tolerated(0.19) possibly_damaging(0.456) TCGA-BA-5152-01 3 197259341 197259341 G A BDH1 Missense_Mutation p.S70L 0.18 tolerated(0.09) benign(0.446) TCGA-BA-5152-01 3 23959350 23959350 G A RPL15 5'UTR 0.24 TCGA-BA-5152-01 3 33155701 33155701 C T CRTAP Silent p.L44L 0.20 TCGA-BA-5152-01 3 35778790 35778790 C A ARPP21 Missense_Mutation p.S493Y 0.32 deleterious(0.05) benign(0.382) TCGA-BA-5152-01 3 38266073 38266073 G A OXSR1 Silent p.L238L 0.06 TCGA-BA-5152-01 3 39226071 39226071 C G XIRP1 Missense_Mutation p.Q1622H 0.24 tolerated(0.08) benign(0.004) TCGA-BA-5152-01 3 44612228 44612228 G C ZKSCAN7 Missense_Mutation p.Q542H 0.28 tolerated(0.06) probably_damaging(0.988) TCGA-BA-5152-01 3 44692482 44692482 G A ZNF35 5'UTR 0.30 TCGA-BA-5152-01 3 4699900 4699900 C G ITPR1 Missense_Mutation p.D348E 0.24 tolerated(0.13) benign(0.09) TCGA-BA-5152-01 3 4725457 4725457 G C ITPR1 Missense_Mutation p.G1143A 0.29 tolerated(0.51) benign(0.001) TCGA-BA-5152-01 3 48581010 48581010 C T PFKFB4 Intron 0.16 TCGA-BA-5152-01 3 48625737 48625737 G A COL7A1 Silent p.F896F 0.30 TCGA-BA-5152-01 3 48626388 48626388 G A COL7A1 Silent p.L785L 0.24 TCGA-BA-5152-01 3 48955605 48955605 C T ARIH2OS 3'UTR 0.11 TCGA-BA-5152-01 3 49692476 49692476 C G BSN Silent p.L1829L 0.06 TCGA-BA-5152-01 3 49935953 49935953 C T MST1R Missense_Mutation p.E573K 0.29 tolerated(0.13) benign(0.032) TCGA-BA-5152-01 3 49936568 49936568 C T MST1R Silent p.V453V 0.31 TCGA-BA-5152-01 3 52559068 52559068 C G NT5DC2 Missense_Mutation p.E420Q 0.18 tolerated(0.09) probably_damaging(1) TCGA-BA-5152-01 3 55717821 55717821 C G ERC2 Splice_Site 0.06 TCGA-BA-5152-01 3 58413745 58413745 G C PDHB 3'UTR 0.36 TCGA-BA-5152-01 3 63973786 63973786 G C ATXN7 Missense_Mutation p.D383H 0.26 deleterious(0) probably_damaging(0.997) TCGA-BA-5152-01 3 70014321 70014321 C T MITF Silent p.S495S 0.22 TCGA-BA-5152-01 3 77666728 77666728 G C ROBO2 Missense_Mutation p.D1136H 0.28 deleterious(0.01) possibly_damaging(0.861) TCGA-BA-5152-01 3 97711819 97711819 G C GABRR3 3'Flank 0.10 TCGA-BA-5152-01 3 98512551 98512551 C G ST3GAL6 Silent p.L314L 0.25 TCGA-BA-5152-01 3 9990498 9990498 G C PRRT3 Nonsense_Mutation p.S372* 0.26 TCGA-BA-5152-01 4 103585971 103585971 C T MANBA Nonsense_Mutation p.W452* 0.25 TCGA-BA-5152-01 4 109780855 109780856 - TGGC COL25A1 Frame_Shift_Ins p.T426Sfs*3 0.15 TCGA-BA-5152-01 4 111470954 111470954 G C ENPEP Missense_Mutation p.E805Q 0.26 tolerated(0.55) benign(0.034) TCGA-BA-5152-01 4 113468485 113468485 C T C4orf21 Missense_Mutation p.E1852K 0.14 tolerated(0.05) benign(0.069) TCGA-BA-5152-01 4 119736304 119736304 G C SEC24D Missense_Mutation p.S227C 0.24 tolerated(0.17) benign(0) TCGA-BA-5152-01 4 123301219 123301219 G A ADAD1 Intron 0.24 TCGA-BA-5152-01 4 126241934 126241934 C A FAT4 Silent p.S1456S 0.21 TCGA-BA-5152-01 4 15937539 15937539 C G FGFBP1 3'UTR 0.22 TCGA-BA-5152-01 4 16590367 16590367 C A LDB2 Missense_Mutation p.R166L 0.27 tolerated(0.11) benign(0.089) TCGA-BA-5152-01 4 20884280 20884280 C G KCNIP4 Missense_Mutation p.M38I 0.27 tolerated(0.19) benign(0.001) TCGA-BA-5152-01 4 2259719 2259719 C G MXD4 Missense_Mutation p.E62Q 0.21 deleterious(0.01) probably_damaging(0.969) TCGA-BA-5152-01 4 41016114 41016114 G A APBB2 Silent p.L107L 0.26 TCGA-BA-5152-01 4 44176989 44176989 G C KCTD8 Missense_Mutation p.Q414E 0.23 tolerated(0.19) possibly_damaging(0.857) TCGA-BA-5152-01 4 54364928 54364928 G C LNX1 Silent p.L286L 0.24 TCGA-BA-5152-01 4 66217204 66217204 C T EPHA5 Missense_Mutation p.R804K 0.21 deleterious(0) probably_damaging(0.931) TCGA-BA-5152-01 4 68514899 68514899 G A UBA6 Missense_Mutation p.L379F 0.19 tolerated(0.25) benign(0.028) TCGA-BA-5152-01 4 69535910 69535910 C T UGT2B15 Missense_Mutation p.E143K 0.26 tolerated(0.22) benign(0.072) TCGA-BA-5152-01 4 69816835 69816835 G A UGT2A3 Missense_Mutation p.S215L 0.25 tolerated(0.39) benign(0.049) TCGA-BA-5152-01 4 71690035 71690035 C G GRSF1 3'UTR 0.27 TCGA-BA-5152-01 4 73149386 73149386 G A ADAMTS3 Nonsense_Mutation p.Q1029* 0.28 TCGA-BA-5152-01 4 74919850 74919850 C T PPBPP2 RNA 0.12 TCGA-BA-5152-01 4 75938051 75938051 C G PARM1 Missense_Mutation p.P154A 0.22 tolerated(0.09) possibly_damaging(0.849) TCGA-BA-5152-01 4 76703974 76703974 C G USO1 Missense_Mutation p.S275C 0.14 deleterious(0) possibly_damaging(0.848) TCGA-BA-5152-01 4 83791497 83791497 G C SEC31A Missense_Mutation p.S288C 0.21 deleterious(0.03) benign(0.013) TCGA-BA-5152-01 5 126154881 126154881 C G LMNB1 Intron 0.29 TCGA-BA-5152-01 5 127654636 127654636 G C FBN2 Missense_Mutation p.P1510R 0.04 deleterious(0.01) probably_damaging(1) TCGA-BA-5152-01 5 128364098 128364098 C T SLC27A6 Silent p.F505F 0.21 TCGA-BA-5152-01 5 136403477 136403477 G A SPOCK1 Silent p.L172L 0.23 TCGA-BA-5152-01 5 136964011 136964011 G A KLHL3 Silent p.D522D 0.13 TCGA-BA-5152-01 5 137028128 137028128 G A KLHL3 Silent p.L124L 0.15 TCGA-BA-5152-01 5 137497522 137497522 C T BRD8 Missense_Mutation p.D738N 0.18 tolerated(0.1) possibly_damaging(0.876) TCGA-BA-5152-01 5 137754821 137754821 G A KDM3B Silent p.L1205L 0.29 TCGA-BA-5152-01 5 140236754 140236754 C G PCDHA10 Missense_Mutation p.S374C 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BA-5152-01 5 140236766 140236766 C T PCDHA10 Missense_Mutation p.S378L 0.19 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-BA-5152-01 5 140764372 140764372 G C PCDHGA7 Missense_Mutation p.D636H 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BA-5152-01 5 140793078 140793078 C G PCDHGA10 Missense_Mutation p.I112M 0.29 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BA-5152-01 5 142283207 142283207 G T ARHGAP26 Nonsense_Mutation p.E269* 0.23 TCGA-BA-5152-01 5 150723127 150723127 G A SLC36A2 Silent p.F96F 0.21 TCGA-BA-5152-01 5 151169928 151169928 C G G3BP1 Nonsense_Mutation p.S47* 0.17 TCGA-BA-5152-01 5 168127613 168127613 C G SLIT3 Silent p.L972L 0.29 TCGA-BA-5152-01 5 176026363 176026363 G C GPRIN1 Nonsense_Mutation p.S158* 0.28 TCGA-BA-5152-01 5 178358745 178358745 C T ZFP2 Missense_Mutation p.S144F 0.24 deleterious(0.04) possibly_damaging(0.87) TCGA-BA-5152-01 5 178359095 178359095 C T ZFP2 Nonsense_Mutation p.Q261* 0.23 TCGA-BA-5152-01 5 32091009 32091009 G C PDZD2 Silent p.L2485L 0.32 TCGA-BA-5152-01 5 36181975 36181975 G C SKP2 Missense_Mutation p.D373H 0.29 deleterious(0.01) possibly_damaging(0.527) TCGA-BA-5152-01 5 37479940 37479940 C T WDR70 Nonsense_Mutation p.Q231* 0.22 TCGA-BA-5152-01 5 41911231 41911231 C G C5orf51 Missense_Mutation p.L146V 0.25 tolerated(1) benign(0.024) TCGA-BA-5152-01 5 43535702 43535702 C T PAIP1 Missense_Mutation p.G338E 0.23 deleterious(0) possibly_damaging(0.718) TCGA-BA-5152-01 5 43616149 43616149 C T NNT Missense_Mutation p.S194F 0.32 deleterious(0) probably_damaging(0.97) TCGA-BA-5152-01 5 50091070 50091070 G C PARP8 Missense_Mutation p.R416T 0.13 tolerated_low_confidence(0.36) benign(0.351) TCGA-BA-5152-01 5 66456300 66456300 C G MAST4 Nonsense_Mutation p.S1222* 0.25 TCGA-BA-5152-01 5 74324700 74324700 C T GCNT4 Missense_Mutation p.R388Q 0.30 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 5 74646146 74646146 G A HMGCR Missense_Mutation p.E243K 0.07 tolerated(0.34) possibly_damaging(0.627) TCGA-BA-5152-01 5 76171314 76171314 G A S100Z Missense_Mutation p.E44K 0.22 tolerated(0.15) benign(0.021) TCGA-BA-5152-01 5 81613993 81613993 C T ATP6AP1L Silent p.I183I 0.19 TCGA-BA-5152-01 5 85578475 85578475 C T NBPF22P RNA 0.25 TCGA-BA-5152-01 5 89705476 89705476 C T CETN3 Translation_Start_Site p.M1? 0.26 deleterious(0.01) benign(0.035) TCGA-BA-5152-01 5 92929548 92929548 G C NR2F1 Nonstop_Mutation p.*424Yext*72 0.08 TCGA-BA-5152-01 6 134212923 134212923 G A TCF21 Missense_Mutation p.G175R 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BA-5152-01 6 139487747 139487747 G A HECA Missense_Mutation p.E200K 0.44 tolerated(0.11) benign(0.4) TCGA-BA-5152-01 6 18225791 18225791 C G DEK 3'UTR 0.36 TCGA-BA-5152-01 6 29910683 29910683 T C HLA-A Missense_Mutation p.W75R 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-BA-5152-01 6 32135415 32135415 G C EGFL8 Missense_Mutation p.E273Q 0.46 deleterious(0) probably_damaging(0.994) TCGA-BA-5152-01 6 32942323 32942323 C T BRD2 Silent p.L38L 0.11 TCGA-BA-5152-01 6 33154361 33154361 C T COL11A2 Intron 0.36 TCGA-BA-5152-01 6 35027938 35027938 G A ANKS1A Missense_Mutation p.E698K 0.21 tolerated(0.33) benign(0.345) TCGA-BA-5152-01 6 350703 350703 G A DUSP22 Intron 0.16 TCGA-BA-5152-01 6 35280429 35280429 G A DEF6 Silent p.L229L 0.09 TCGA-BA-5152-01 6 35888247 35888247 C T SRPK1 Silent p.R24R 0.38 TCGA-BA-5152-01 6 36475338 36475338 C T STK38 Silent p.L237L 0.34 TCGA-BA-5152-01 6 38791364 38791364 G C DNAH8 Silent p.L1032L 0.15 TCGA-BA-5152-01 6 41552527 41552527 G A FOXP4 Missense_Mutation p.M107I 0.33 deleterious(0) probably_damaging(0.943) TCGA-BA-5152-01 6 42227372 42227372 C T TRERF1 Silent p.P658P 0.23 TCGA-BA-5152-01 6 43480834 43480834 G A YIPF3 Silent p.I213I 0.25 TCGA-BA-5152-01 6 46851916 46851916 C G GPR116 Missense_Mutation p.E141Q 0.11 tolerated(0.31) benign(0.14) TCGA-BA-5152-01 6 46977116 46977116 C T GPR110 Silent p.R685R 0.23 TCGA-BA-5152-01 6 46977149 46977149 C T GPR110 Nonsense_Mutation p.W674* 0.18 TCGA-BA-5152-01 6 46977208 46977208 C T GPR110 Missense_Mutation p.G655R 0.16 deleterious(0.05) possibly_damaging(0.489) TCGA-BA-5152-01 6 46977266 46977266 C G GPR110 Missense_Mutation p.L635F 0.16 deleterious(0) probably_damaging(0.991) TCGA-BA-5152-01 6 46977332 46977332 C A GPR110 Missense_Mutation p.Q613H 0.16 tolerated(0.22) benign(0.272) TCGA-BA-5152-01 6 46977338 46977338 C T GPR110 Nonsense_Mutation p.W611* 0.18 TCGA-BA-5152-01 6 46977410 46977410 C A GPR110 Missense_Mutation p.W587C 0.17 tolerated(0.06) benign(0.199) TCGA-BA-5152-01 6 46977535 46977535 C T GPR110 Missense_Mutation p.D546N 0.23 tolerated(0.74) benign(0.003) TCGA-BA-5152-01 6 46977656 46977656 C G GPR110 Silent p.V505V 0.18 TCGA-BA-5152-01 6 46977742 46977742 C T GPR110 Missense_Mutation p.E477K 0.21 tolerated(0.34) benign(0.006) TCGA-BA-5152-01 6 46977935 46977935 G A GPR110 Silent p.S412S 0.17 TCGA-BA-5152-01 6 49698947 49698947 C T CRISP3 Missense_Mutation p.R203K 0.23 tolerated(0.86) benign(0.02) TCGA-BA-5152-01 6 76407199 76407199 G C SENP6 Missense_Mutation p.E752Q 0.29 tolerated(0.91) probably_damaging(0.955) TCGA-BA-5152-01 6 88854999 88854999 C T CNR1 5'UTR 0.18 TCGA-BA-5152-01 7 100350144 100350144 G A ZAN Missense_Mutation p.E806K 0.11 unknown(0) TCGA-BA-5152-01 7 101813790 101813790 C G CUX1 Missense_Mutation p.S274C 0.22 deleterious(0) unknown(0) TCGA-BA-5152-01 7 102100194 102100194 C A ALKBH4 Nonsense_Mutation p.E60* 0.15 TCGA-BA-5152-01 7 102985145 102985145 C G DNAJC2 5'UTR 0.27 TCGA-BA-5152-01 7 105146708 105146708 G A PUS7 Silent p.F137F 0.16 TCGA-BA-5152-01 7 105893498 105893498 C G NAMPT Missense_Mutation p.E444Q 0.16 tolerated(0.4) benign(0.068) TCGA-BA-5152-01 7 114329955 114329955 G A FOXP2 Missense_Mutation p.E733K 0.12 deleterious(0.02) benign(0.007) TCGA-BA-5152-01 7 122261717 122261717 C G CADPS2 Missense_Mutation p.E308Q 0.16 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 7 127975631 127975631 C G RBM28 Missense_Mutation p.Q304H 0.11 tolerated(0.08) benign(0.004) TCGA-BA-5152-01 7 135289087 135289087 G C NUP205 Splice_Site p.X901_splice 0.24 TCGA-BA-5152-01 7 140453110 140453110 G C BRAF Missense_Mutation p.Q609E 0.16 deleterious(0.01) benign(0.146) TCGA-BA-5152-01 7 1479682 1479682 C T MICALL2 Silent p.P615P 0.31 TCGA-BA-5152-01 7 148311131 148311131 C A C7orf33 Intron 0.23 TCGA-BA-5152-01 7 148495716 148495716 G T CUL1 Nonsense_Mutation p.E695* 0.17 TCGA-BA-5152-01 7 148801943 148801943 G A ZNF425 Silent p.R340R 0.18 TCGA-BA-5152-01 7 156437207 156437207 G C RNF32 Missense_Mutation p.K10N 0.08 tolerated(0.05) benign(0.01) TCGA-BA-5152-01 7 21695520 21695520 C T DNAH11 Missense_Mutation p.S1677F 0.11 benign(0.005) TCGA-BA-5152-01 7 38288871 38288871 C G TRGC2 Missense_Mutation p.E102Q 0.16 deleterious(0.03) possibly_damaging(0.702) TCGA-BA-5152-01 7 38288908 38288908 G A TRGC2 Silent p.I89I 0.26 TCGA-BA-5152-01 7 38785177 38785177 C G VPS41 Missense_Mutation p.E655Q 0.22 deleterious(0.01) probably_damaging(0.932) TCGA-BA-5152-01 7 42959326 42959326 C G PSMA2 Intron 0.11 TCGA-BA-5152-01 7 4830913 4830913 T A AP5Z1 Missense_Mutation p.V774E 0.33 deleterious(0) possibly_damaging(0.481) TCGA-BA-5152-01 7 53103800 53103800 C T POM121L12 Missense_Mutation p.R146C 0.31 deleterious(0) benign(0.056) TCGA-BA-5152-01 7 8062158 8062158 C A GLCCI1 Missense_Mutation p.Q219K 0.06 tolerated(1) possibly_damaging(0.879) TCGA-BA-5152-01 7 81334827 81334827 C G HGF Missense_Mutation p.R630P 0.12 deleterious(0.02) probably_damaging(0.988) TCGA-BA-5152-01 7 82583504 82583504 A C PCLO Silent p.G2255G 0.10 TCGA-BA-5152-01 7 87072722 87072722 C T ABCB4 Silent p.Q423Q 0.10 TCGA-BA-5152-01 7 95434085 95434085 A G DYNC1I1 Missense_Mutation p.K15R 0.38 tolerated(0.09) probably_damaging(0.983) TCGA-BA-5152-01 7 99425722 99425722 G A CYP3A43 5'Flank 0.10 TCGA-BA-5152-01 8 100654378 100654378 G A VPS13B Missense_Mutation p.E1879K 0.09 tolerated(0.18) benign(0.011) TCGA-BA-5152-01 8 100844830 100844830 G C VPS13B Missense_Mutation p.Q3213H 0.17 tolerated(0.24) benign(0.216) TCGA-BA-5152-01 8 101936232 101936232 G A YWHAZ Missense_Mutation p.S210L 0.21 deleterious_low_confidence(0.04) benign(0.105) TCGA-BA-5152-01 8 102701558 102701558 C T NCALD Silent p.P187P 0.15 TCGA-BA-5152-01 8 10583925 10583925 C G SOX7 Missense_Mutation p.E216Q 0.33 tolerated(0.4) benign(0.076) TCGA-BA-5152-01 8 121180418 121180418 G - COL14A1 Frame_Shift_Del p.R123Kfs*25 0.28 TCGA-BA-5152-01 8 121823639 121823639 C T SNTB1 Missense_Mutation p.D149N 0.19 deleterious(0) probably_damaging(0.998) TCGA-BA-5152-01 8 124140671 124140671 C A TBC1D31 Missense_Mutation p.Q679K 0.35 tolerated(1) benign(0) TCGA-BA-5152-01 8 124664436 124664436 G A KLHL38 Missense_Mutation p.S244F 0.19 deleterious(0) benign(0.289) TCGA-BA-5152-01 8 125072457 125072457 G C FER1L6 Missense_Mutation p.E971Q 0.27 tolerated(0.1) benign(0.147) TCGA-BA-5152-01 8 133740154 133740154 G A TMEM71 Missense_Mutation p.S170F 0.10 tolerated(0.26) benign(0.066) TCGA-BA-5152-01 8 143993975 143993975 C G CYP11B2 Missense_Mutation p.E457Q 0.18 tolerated(0.08) possibly_damaging(0.458) TCGA-BA-5152-01 8 144732148 144732148 G A ZNF623 Missense_Mutation p.D36N 0.37 tolerated(0.18) benign(0.038) TCGA-BA-5152-01 8 144941431 144941431 G A EPPK1 Silent p.L1997L 0.24 TCGA-BA-5152-01 8 146157135 146157135 C T ZNF16 Silent p.E346E 0.16 TCGA-BA-5152-01 8 19297418 19297418 C T CSGALNACT1 Silent p.G292G 0.32 TCGA-BA-5152-01 8 25708194 25708194 G C EBF2 Missense_Mutation p.Q538E 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.68) TCGA-BA-5152-01 8 2823375 2823375 C A CSMD1 Missense_Mutation p.V3068F 0.60 benign(0.003) TCGA-BA-5152-01 8 41906674 41906674 G C KAT6A 5'UTR 0.40 TCGA-BA-5152-01 8 48719860 48719860 C G PRKDC Missense_Mutation p.E3194D 0.26 benign(0.072) TCGA-BA-5152-01 8 48777319 48777319 G T PRKDC Nonsense_Mutation p.S1789* 0.17 TCGA-BA-5152-01 8 48883280 48883280 G A MCM4 Missense_Mutation p.M548I 0.24 deleterious(0.03) benign(0.007) TCGA-BA-5152-01 8 52284541 52284541 G A PXDNL Nonsense_Mutation p.Q1265* 0.16 TCGA-BA-5152-01 8 67504755 67504755 C T MYBL1 Missense_Mutation p.D263N 0.06 deleterious(0.04) probably_damaging(0.981) TCGA-BA-5152-01 8 68150972 68150972 C T ARFGEF1 Missense_Mutation p.E1046K 0.24 deleterious(0) probably_damaging(0.983) TCGA-BA-5152-01 8 68165736 68165736 G A ARFGEF1 Missense_Mutation p.S883L 0.09 deleterious(0.03) benign(0.169) TCGA-BA-5152-01 8 73942628 73942628 G A TERF1 Silent p.L315L 0.16 TCGA-BA-5152-01 8 74859029 74859029 C T TCEB1 Missense_Mutation p.E59K 0.26 tolerated(0.09) benign(0.108) TCGA-BA-5152-01 8 75227373 75227373 C T JPH1 Missense_Mutation p.D288N 0.29 deleterious(0) probably_damaging(0.981) TCGA-BA-5152-01 8 77617904 77617904 G A ZFHX4 Silent p.A527A 0.19 TCGA-BA-5152-01 8 80976724 80976724 C G TPD52 Missense_Mutation p.E82Q 0.28 deleterious(0.02) possibly_damaging(0.461) TCGA-BA-5152-01 8 94746326 94746326 G A RBM12B Silent p.F771F 0.23 TCGA-BA-5152-01 8 95690463 95690463 C T ESRP1 Missense_Mutation p.P562S 0.22 tolerated(0.13) benign(0.011) TCGA-BA-5152-01 8 99215352 99215352 G C NIPAL2 Missense_Mutation p.I288M 0.35 deleterious(0.05) possibly_damaging(0.571) TCGA-BA-5152-01 9 101304180 101304180 G A GABBR2 Missense_Mutation p.T202M 0.17 tolerated(0.14) probably_damaging(0.99) TCGA-BA-5152-01 9 101608279 101608279 G C GALNT12 Missense_Mutation p.Q493H 0.21 tolerated(0.71) benign(0.006) TCGA-BA-5152-01 9 101763192 101763192 G C COL15A1 Missense_Mutation p.G342R 0.25 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-BA-5152-01 9 107298345 107298345 G A OR13C3 Silent p.F250F 0.31 TCGA-BA-5152-01 9 107456838 107456838 C G OR13D1 Missense_Mutation p.L46V 0.28 deleterious(0) possibly_damaging(0.799) TCGA-BA-5152-01 9 112899402 112899402 C G PALM2-AKAP2 Silent p.L526L 0.32 TCGA-BA-5152-01 9 114875121 114875121 G C SUSD1 Nonsense_Mutation p.S305* 0.31 TCGA-BA-5152-01 9 115952852 115952852 C T FKBP15 Missense_Mutation p.D358N 0.45 deleterious(0.05) probably_damaging(0.999) TCGA-BA-5152-01 9 117848518 117848518 C T TNC Missense_Mutation p.D498N 0.23 deleterious(0.01) benign(0.131) TCGA-BA-5152-01 9 123924347 123924347 G C CNTRL Missense_Mutation p.E1741Q 0.22 possibly_damaging(0.806) TCGA-BA-5152-01 9 124794104 124794104 C T TTLL11 Silent p.L287L 0.23 TCGA-BA-5152-01 9 127990317 127990317 G A RABEPK Missense_Mutation p.D219N 0.33 deleterious(0.03) benign(0.35) TCGA-BA-5152-01 9 130263396 130263396 G C LRSAM1 Missense_Mutation p.E674Q 0.25 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 9 131671590 131671590 C T LRRC8A Missense_Mutation p.T716M 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-BA-5152-01 9 135975666 135975666 G C RALGDS Nonsense_Mutation p.S853* 0.23 TCGA-BA-5152-01 9 138391608 138391608 C G C9orf116 Silent p.V30V 0.12 TCGA-BA-5152-01 9 138825105 138825105 G A UBAC1 3'UTR 0.36 TCGA-BA-5152-01 9 138825154 138825154 G A UBAC1 3'UTR 0.24 TCGA-BA-5152-01 9 139840549 139840549 G A C8G Missense_Mutation p.R120Q 0.36 tolerated(0.13) benign(0.405) TCGA-BA-5152-01 9 21968242 21968242 C T CDKN2A Splice_Site 0.50 TCGA-BA-5152-01 9 34290296 34290296 G A KIF24 Silent p.L335L 0.53 TCGA-BA-5152-01 9 4605410 4605410 C T SPATA6L Silent p.K284K 0.19 TCGA-BA-5152-01 9 86518637 86518637 G C KIF27 Missense_Mutation p.Q266E 0.27 deleterious(0) probably_damaging(0.96) TCGA-BA-5152-01 9 87482318 87482318 C T NTRK2 Silent p.I535I 0.25 TCGA-BA-5152-01 9 95077643 95077643 C T NOL8 Missense_Mutation p.D422N 0.19 tolerated(0.5) benign(0.002) TCGA-BA-5152-01 9 95077919 95077919 C T NOL8 Missense_Mutation p.E330K 0.35 deleterious(0.03) possibly_damaging(0.71) TCGA-BA-5152-01 9 95610741 95610741 C T ZNF484 Missense_Mutation p.D112N 0.26 tolerated(0.56) benign(0.004) TCGA-BA-5152-01 X 107400125 107400125 G C COL4A6 3'UTR 0.63 TCGA-BA-5152-01 X 117530989 117530989 G C WDR44 Missense_Mutation p.L370F 0.43 deleterious(0) probably_damaging(1) TCGA-BA-5152-01 X 13726856 13726856 G C RAB9A 5'UTR 0.48 TCGA-BA-5152-01 X 153608306 153608306 G C EMD Missense_Mutation p.L64F 0.41 tolerated(0.41) benign(0.012) TCGA-BA-5152-01 X 1546743 1546743 C T ASMTL Missense_Mutation p.E261K 0.09 tolerated(0.81) benign(0.003) TCGA-BA-5152-01 X 18646649 18646649 G A CDKL5 Silent p.G885G 0.49 TCGA-BA-5152-01 X 19764535 19764535 C T SH3KBP1 Missense_Mutation p.D63N 0.50 tolerated(0.15) benign(0.008) TCGA-BA-5152-01 X 48783269 48783269 C G OTUD5 Missense_Mutation p.E378Q 0.16 deleterious(0.01) probably_damaging(0.927) TCGA-BA-5152-01 X 50094305 50094305 G A CCNB3 Silent p.L1342L 0.60 TCGA-BA-5152-01 X 68058466 68058466 G A EFNB1 Silent p.L45L 0.57 TCGA-BA-5152-01 X 69424864 69424864 C G DGAT2L6 Missense_Mutation p.H308D 0.49 deleterious(0) probably_damaging(0.927) TCGA-BA-5152-01 X 69425016 69425016 C T DGAT2L6 3'UTR 0.47 TCGA-BA-5152-01 X 92927287 92927287 G C NAP1L3 Missense_Mutation p.F339L 0.32 tolerated(0.28) possibly_damaging(0.787) TCGA-BA-5152-01 X 9679750 9679750 C T TBL1X Silent p.F513F 0.43 TCGA-BA-5152-01 Y 4967676 4967676 C T PCDH11Y Missense_Mutation p.S686F 0.43 deleterious(0) probably_damaging(0.952) TCGA-BA-5153-01 11 113283362 113283362 G A DRD2 Missense_Mutation p.R352W 0.55 tolerated(0.07) possibly_damaging(0.892) TCGA-BA-5153-01 11 120732824 120732824 C T GRIK4 Missense_Mutation p.P301S 0.38 tolerated(0.38) benign(0.166) TCGA-BA-5153-01 11 132527003 132527003 G A OPCML Missense_Mutation p.R127W 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-BA-5153-01 11 60696185 60696185 T A TMEM132A Missense_Mutation p.Y207N 0.41 deleterious(0) benign(0.125) TCGA-BA-5153-01 11 7618879 7618879 A G PPFIBP2 Missense_Mutation p.N154S 0.42 deleterious(0.02) benign(0.009) TCGA-BA-5153-01 12 53039156 53039156 C A KRT2 Missense_Mutation p.G523C 0.37 deleterious(0.04) unknown(0) TCGA-BA-5153-01 12 96379739 96379739 G A HAL Missense_Mutation p.H385Y 0.46 deleterious(0.03) probably_damaging(0.972) TCGA-BA-5153-01 13 46357874 46357874 C T SIAH3 Missense_Mutation p.A152T 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-BA-5153-01 14 64493344 64493344 C T SYNE2 Silent p.I2100I 0.62 TCGA-BA-5153-01 16 23713534 23713534 C T ERN2 Missense_Mutation p.G429E 0.36 tolerated(1) benign(0.009) TCGA-BA-5153-01 16 50820854 50820854 A T CYLD Nonsense_Mutation p.K680* 0.55 TCGA-BA-5153-01 16 68729271 68729271 G A CDH3 Missense_Mutation p.G706S 0.67 deleterious(0.01) probably_damaging(0.974) TCGA-BA-5153-01 17 4840867 4840867 C T SLC25A11 3'UTR 0.31 TCGA-BA-5153-01 17 7533791 7533791 G A SHBG Missense_Mutation p.A57T 0.34 tolerated(0.83) benign(0.005) TCGA-BA-5153-01 17 79954516 79954516 G C ASPSCR1 Missense_Mutation p.V243L 0.32 tolerated(0.06) unknown(0) TCGA-BA-5153-01 18 13645458 13645458 C G LDLRAD4 Silent p.T241T 0.42 TCGA-BA-5153-01 18 44036604 44036604 G T RNF165 3'UTR 0.20 TCGA-BA-5153-01 18 44036605 44036605 G T RNF165 3'UTR 0.21 TCGA-BA-5153-01 18 74091731 74091731 C T ZNF516 Missense_Mutation p.R780H 0.31 deleterious(0) probably_damaging(0.998) TCGA-BA-5153-01 19 21719158 21719158 G A ZNF429 Silent p.R101R 0.12 TCGA-BA-5153-01 19 3148739 3148739 G A GNA15 Missense_Mutation p.R99Q 0.90 tolerated(0.35) benign(0.003) TCGA-BA-5153-01 19 6477435 6477435 A G DENND1C Missense_Mutation p.F134S 0.48 deleterious(0.03) benign(0.001) TCGA-BA-5153-01 1 10494743 10494743 G A APITD1 Missense_Mutation p.A69T 0.04 deleterious(0) probably_damaging(0.987) TCGA-BA-5153-01 1 169391468 169391468 A T CCDC181 Missense_Mutation p.D67E 0.34 tolerated(1) benign(0.02) TCGA-BA-5153-01 1 178491563 178491563 T A TEX35 Silent p.T230T 0.42 TCGA-BA-5153-01 1 21220080 21220080 G C EIF4G3 Missense_Mutation p.P678R 0.36 deleterious(0.01) possibly_damaging(0.512) TCGA-BA-5153-01 1 228295431 228295431 G T MRPL55 Missense_Mutation p.L92M 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-BA-5153-01 1 42046335 42046335 G A HIVEP3 Silent p.P1378P 0.43 TCGA-BA-5153-01 22 36685234 36685234 A G MYH9 Missense_Mutation p.L1485P 0.33 probably_damaging(0.998) TCGA-BA-5153-01 22 41863565 41863565 G A PHF5A Missense_Mutation p.R44C 0.43 deleterious(0.04) probably_damaging(0.925) TCGA-BA-5153-01 2 179568957 179568957 A G TTN Missense_Mutation p.I10047T 0.33 TCGA-BA-5153-01 2 74883774 74883774 G A SEMA4F Missense_Mutation p.A87T 0.34 deleterious(0) probably_damaging(0.913) TCGA-BA-5153-01 2 85836569 85836569 T A C2orf68 Missense_Mutation p.I123F 0.36 deleterious(0.01) probably_damaging(0.971) TCGA-BA-5153-01 2 89513047 89513047 T C IGKV1-27 Missense_Mutation p.Y71C 0.24 deleterious(0.01) benign(0.141) TCGA-BA-5153-01 3 123385193 123385193 G A MYLK Missense_Mutation p.A1235V 0.20 tolerated(0.17) benign(0.394) TCGA-BA-5153-01 3 160150245 160150245 G A SMC4 Missense_Mutation p.D1158N 0.08 deleterious(0) possibly_damaging(0.71) TCGA-BA-5153-01 3 195452996 195452997 AG - MUC20 Frame_Shift_Del p.E509Sfs*17 0.11 TCGA-BA-5153-01 4 48529997 48529997 C T FRYL Silent p.K2377K 0.03 TCGA-BA-5153-01 4 9251540 9251540 C T USP17L18 Silent p.G395G 0.12 TCGA-BA-5153-01 5 140480302 140480302 G A PCDHB3 Silent p.G23G 0.26 TCGA-BA-5153-01 5 149357868 149357868 C T SLC26A2 Missense_Mutation p.A218V 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-BA-5153-01 6 146747715 146747715 C T GRM1 Intron 0.15 TCGA-BA-5153-01 6 29012436 29012436 T C OR2W1 Missense_Mutation p.I173V 0.37 tolerated(0.14) benign(0.003) TCGA-BA-5153-01 6 39159524 39159524 G T KCNK5 Missense_Mutation p.N214K 0.34 deleterious(0.02) benign(0.062) TCGA-BA-5153-01 7 150934838 150934838 C T CHPF2 Missense_Mutation p.R464C 0.31 deleterious(0) probably_damaging(0.973) TCGA-BA-5153-01 8 120428777 120428778 AG - NOV Frame_Shift_Del p.S3Cfs*87 0.35 TCGA-BA-5153-01 8 12285220 12285220 C T FAM86B2 Missense_Mutation p.V280M 0.15 deleterious(0.04) benign(0.057) TCGA-BA-5153-01 8 131130883 131130883 T G ASAP1 Missense_Mutation p.D549A 0.51 deleterious(0.01) possibly_damaging(0.492) TCGA-BA-5153-01 8 55534066 55534066 C T RP1 Silent p.F180F 0.38 TCGA-BA-5153-01 8 66691967 66691967 G A PDE7A Missense_Mutation p.R91C 0.04 deleterious(0) possibly_damaging(0.667) TCGA-BA-5153-01 9 36110017 36110017 G A RECK Missense_Mutation p.C610Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-BA-5555-01 10 50374825 50374825 G A C10orf128 Intron 0.46 TCGA-BA-5555-01 10 58120976 58120976 C T ZWINT Missense_Mutation p.A8T 0.52 tolerated(0.41) unknown(0) TCGA-BA-5555-01 10 97583051 97583051 C A ENTPD1 Missense_Mutation p.S37Y 0.45 tolerated(1) possibly_damaging(0.476) TCGA-BA-5555-01 11 130058529 130058529 C T ST14 Silent p.L116L 0.48 TCGA-BA-5555-01 11 134153634 134153634 G C GLB1L3 Missense_Mutation p.W177C 0.43 deleterious(0) probably_damaging(0.999) TCGA-BA-5555-01 11 17434265 17434265 T A ABCC8 Missense_Mutation p.Q835L 0.29 deleterious(0) possibly_damaging(0.7) TCGA-BA-5555-01 11 40137138 40137138 C A LRRC4C Missense_Mutation p.R235S 0.16 tolerated(0.1) benign(0.02) TCGA-BA-5555-01 11 48346805 48346805 A G OR4C3 Missense_Mutation p.K105E 0.12 deleterious(0) possibly_damaging(0.661) TCGA-BA-5555-01 11 55563331 55563331 G T OR5D14 Missense_Mutation p.M100I 0.29 tolerated(1) benign(0.002) TCGA-BA-5555-01 11 59603312 59603312 C G GIF Missense_Mutation p.E348Q 0.26 tolerated(0.38) benign(0.01) TCGA-BA-5555-01 11 6048184 6048184 G T OR56A1 Missense_Mutation p.H251N 0.47 deleterious(0) possibly_damaging(0.671) TCGA-BA-5555-01 11 61067590 61067590 G T DDB1 3'UTR 0.34 TCGA-BA-5555-01 11 62294809 62294809 T C AHNAK Silent p.V2360V 0.25 TCGA-BA-5555-01 11 71293807 71293827 GAGCCACAGCCCCCACTGCCG - KRTAP5-11 In_Frame_Del p.S21_G27del 0.32 TCGA-BA-5555-01 11 87908418 87908418 G A RAB38 Silent p.D45D 0.50 TCGA-BA-5555-01 12 100502306 100502319 GGAGATAAATTTTT - UHRF1BP1L Frame_Shift_Del p.K18* 0.37 TCGA-BA-5555-01 12 107126787 107126787 C G RFX4 Silent p.A528A 0.36 TCGA-BA-5555-01 12 121878774 121878774 C T KDM2B Missense_Mutation p.R1152Q 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-BA-5555-01 12 130851726 130851726 T G PIWIL1 Missense_Mutation p.F748L 0.18 tolerated(0.06) probably_damaging(0.946) TCGA-BA-5555-01 12 14924039 14924039 T C HIST4H4 5'UTR 0.20 TCGA-BA-5555-01 12 21791345 21791345 T C LDHB Missense_Mutation p.M219V 0.32 tolerated(0.27) benign(0.009) TCGA-BA-5555-01 12 22637814 22637814 T A C2CD5 Missense_Mutation p.E456V 0.47 tolerated(0.06) benign(0.007) TCGA-BA-5555-01 12 47472679 47472679 C G AMIGO2 Missense_Mutation p.G36A 0.30 tolerated(0.13) benign(0.009) TCGA-BA-5555-01 12 71158499 71158499 T G PTPRR Silent p.G139G 0.38 TCGA-BA-5555-01 12 81472119 81472119 G T ACSS3 Nonsense_Mutation p.E74* 0.16 TCGA-BA-5555-01 12 9162052 9162052 C A KLRG1 Nonsense_Mutation p.C163* 0.29 TCGA-BA-5555-01 12 95660258 95660258 T A VEZT Nonsense_Mutation p.L187* 0.38 TCGA-BA-5555-01 13 67799767 67799767 C A PCDH9 Missense_Mutation p.A936S 0.44 deleterious(0) probably_damaging(1) TCGA-BA-5555-01 13 86369608 86369608 G A SLITRK6 Missense_Mutation p.H346Y 0.43 deleterious(0) benign(0.017) TCGA-BA-5555-01 14 106780575 106780575 G A IGHV4-28 Nonsense_Mutation p.Q97* 0.29 TCGA-BA-5555-01 14 20248817 20248817 G C OR4M1 Missense_Mutation p.M112I 0.20 tolerated(0.95) benign(0.009) TCGA-BA-5555-01 14 20849089 20849089 C T TEP1 Splice_Site p.X1588_splice 0.24 TCGA-BA-5555-01 14 93277936 93277936 G A GOLGA5 Missense_Mutation p.R386H 0.25 tolerated(0.22) benign(0.04) TCGA-BA-5555-01 15 33936553 33936553 C A RYR3 Missense_Mutation p.R1200S 0.58 probably_damaging(1) TCGA-BA-5555-01 15 35086967 35086967 C A ACTC1 Missense_Mutation p.G15C 0.50 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BA-5555-01 15 41795316 41795316 G A ITPKA Silent p.L446L 0.50 TCGA-BA-5555-01 15 42566686 42566686 G A GANC Missense_Mutation p.A3T 0.17 benign(0.002) TCGA-BA-5555-01 15 42749328 42749328 C A ZNF106 Missense_Mutation p.G26W 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-BA-5555-01 15 72023481 72023481 C A THSD4 Missense_Mutation p.P519T 0.15 deleterious(0) probably_damaging(0.995) TCGA-BA-5555-01 15 86260576 86260576 G A AKAP13 Missense_Mutation p.D1935N 0.38 deleterious(0) probably_damaging(0.991) TCGA-BA-5555-01 16 21995735 21995735 C A PDZD9 Silent p.V156V 0.32 TCGA-BA-5555-01 16 22130326 22130326 C A VWA3A Missense_Mutation p.A365E 0.24 tolerated(1) benign(0.006) TCGA-BA-5555-01 16 3340026 3340026 G A ZNF263 Missense_Mutation p.R507Q 0.26 tolerated(0.17) probably_damaging(0.994) TCGA-BA-5555-01 16 66426206 66426206 C A CDH5 Missense_Mutation p.F379L 0.36 tolerated(0.25) probably_damaging(0.941) TCGA-BA-5555-01 16 70852359 70852359 C T HYDIN Silent p.A4848A 0.38 TCGA-BA-5555-01 17 3526640 3526640 C A SHPK Missense_Mutation p.V214L 0.64 tolerated(1) benign(0.004) TCGA-BA-5555-01 17 58040557 58040557 G A RNFT1 Missense_Mutation p.P49S 0.55 tolerated(0.39) benign(0.004) TCGA-BA-5555-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.56 deleterious(0) probably_damaging(0.996) TCGA-BA-5555-01 18 13069788 13069788 A T CEP192 Nonsense_Mutation p.K1703* 0.26 TCGA-BA-5555-01 18 48604809 48604809 C T SMAD4 Missense_Mutation p.P544L 0.04 deleterious(0.01) benign(0.042) TCGA-BA-5555-01 18 61654402 61654402 C T SERPINB8 Missense_Mutation p.R339W 0.29 tolerated(0.18) probably_damaging(0.954) TCGA-BA-5555-01 18 63511092 63511092 A T CDH7 Missense_Mutation p.E342D 0.31 tolerated(0.06) probably_damaging(0.973) TCGA-BA-5555-01 18 63529970 63529970 C T CDH7 Missense_Mutation p.P561S 0.25 tolerated(0.05) probably_damaging(0.994) TCGA-BA-5555-01 18 6999495 6999495 G A LAMA1 Missense_Mutation p.R1538W 0.20 deleterious(0.02) possibly_damaging(0.901) TCGA-BA-5555-01 18 74154265 74154265 G A ZNF516 Missense_Mutation p.P249L 0.31 deleterious(0) probably_damaging(0.962) TCGA-BA-5555-01 18 76754386 76754386 G A SALL3 Missense_Mutation p.D799N 0.22 tolerated(0.13) probably_damaging(0.95) TCGA-BA-5555-01 19 10394262 10394262 T A ICAM1 Missense_Mutation p.L146H 0.13 deleterious(0) probably_damaging(1) TCGA-BA-5555-01 19 17283733 17283733 G A MYO9B Missense_Mutation p.A701T 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-BA-5555-01 19 18958606 18958606 A G UPF1 Missense_Mutation p.K142R 0.15 tolerated(0.1) benign(0.338) TCGA-BA-5555-01 19 39281521 39281521 C T LGALS7B Silent p.D96D 0.26 TCGA-BA-5555-01 19 40327295 40327295 C A FBL Silent p.V232V 0.34 TCGA-BA-5555-01 19 50826517 50826517 G A KCNC3 Missense_Mutation p.R565W 0.68 deleterious(0) benign(0.127) TCGA-BA-5555-01 19 58005043 58005043 G A ZNF419 Missense_Mutation p.C374Y 0.38 deleterious(0) probably_damaging(1) TCGA-BA-5555-01 19 9014654 9014654 C T MUC16 Missense_Mutation p.R12774H 0.15 benign(0.233) TCGA-BA-5555-01 1 100964649 100964649 C T CDC14A Missense_Mutation p.P529L 0.39 tolerated_low_confidence(0.09) benign(0.343) TCGA-BA-5555-01 1 104161600 104161600 G T AMY2A Missense_Mutation p.S128I 0.10 deleterious(0.01) possibly_damaging(0.848) TCGA-BA-5555-01 1 112999521 112999521 A T CTTNBP2NL Missense_Mutation p.Q469H 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-BA-5555-01 1 116280898 116280898 C G CASQ2 Missense_Mutation p.R160P 0.34 deleterious(0.05) probably_damaging(0.978) TCGA-BA-5555-01 1 116280899 116280899 G A CASQ2 Missense_Mutation p.R160C 0.34 deleterious(0.01) probably_damaging(0.98) TCGA-BA-5555-01 1 145293541 145293541 C G NBPF10 Missense_Mutation p.Q46E 0.03 benign(0.232) TCGA-BA-5555-01 1 148251730 148251730 C T NBPF20 3'UTR 0.34 TCGA-BA-5555-01 1 155747430 155747430 G A GON4L Nonsense_Mutation p.Q692* 0.37 TCGA-BA-5555-01 1 158449897 158449897 C A OR10R2 Missense_Mutation p.T77K 0.35 deleterious(0) possibly_damaging(0.493) TCGA-BA-5555-01 1 158576337 158576337 G C OR10Z1 Missense_Mutation p.V37L 0.28 tolerated(1) benign(0.004) TCGA-BA-5555-01 1 161681106 161681106 G A FCRLA Missense_Mutation p.R137Q 0.33 tolerated(0.28) benign(0.272) TCGA-BA-5555-01 1 176668369 176668369 G T PAPPA2 Silent p.P960P 0.25 TCGA-BA-5555-01 1 177249786 177249786 C G BRINP2 Missense_Mutation p.R492G 0.41 deleterious(0) probably_damaging(0.995) TCGA-BA-5555-01 1 19670883 19670884 - A CAPZB Frame_Shift_Ins p.G234Wfs*14 0.27 TCGA-BA-5555-01 1 196928027 196928027 A G CFHR2 Silent p.S210S 0.35 TCGA-BA-5555-01 1 227921284 227921284 G A JMJD4 Missense_Mutation p.A264V 0.11 tolerated(0.5) benign(0.045) TCGA-BA-5555-01 1 231349664 231349664 G A TRIM67 Missense_Mutation p.A743T 0.43 deleterious(0.03) probably_damaging(0.984) TCGA-BA-5555-01 1 23420866 23420866 T C LUZP1 5'UTR 0.14 TCGA-BA-5555-01 1 23520748 23520748 A G HTR1D 5'UTR 0.40 TCGA-BA-5555-01 1 248570029 248570029 A G OR2T1 Missense_Mutation p.Y245C 0.48 deleterious(0) benign(0.443) TCGA-BA-5555-01 1 33820075 33820075 C T PHC2 Silent p.Q494Q 0.39 TCGA-BA-5555-01 1 53925281 53925281 C A DMRTB1 Missense_Mutation p.A52E 0.33 deleterious(0.04) probably_damaging(0.941) TCGA-BA-5555-01 1 85135504 85135504 T C SSX2IP Missense_Mutation p.I96V 0.38 tolerated(0.72) benign(0.007) TCGA-BA-5555-01 1 87188228 87188228 G A SH3GLB1 Missense_Mutation p.A117T 0.14 tolerated(0.75) possibly_damaging(0.611) TCGA-BA-5555-01 20 39706251 39706251 G A TOP1 Silent p.K103K 0.53 TCGA-BA-5555-01 20 42683010 42683010 G T TOX2 Missense_Mutation p.K241N 0.10 deleterious(0) probably_damaging(0.993) TCGA-BA-5555-01 20 43933064 43933064 C T MATN4 Silent p.R149R 0.33 TCGA-BA-5555-01 20 44045291 44045291 T A PIGT Missense_Mutation p.S108T 0.16 deleterious(0.03) benign(0.01) TCGA-BA-5555-01 20 47991215 47991215 G A KCNB1 Silent p.R294R 0.10 TCGA-BA-5555-01 21 15753858 15753858 G A HSPA13 Missense_Mutation p.A11V 0.07 tolerated(0.22) probably_damaging(0.994) TCGA-BA-5555-01 21 30521536 30521536 C T MAP3K7CL Missense_Mutation p.P133S 0.58 tolerated(0.07) benign(0.301) TCGA-BA-5555-01 22 18222188 18222189 - T BID Frame_Shift_Ins p.M143Nfs*4 0.25 TCGA-BA-5555-01 22 18369952 18369952 G A MICAL3 Missense_Mutation p.T684I 0.29 benign(0.211) TCGA-BA-5555-01 22 33253268 33253268 G C TIMP3 Silent p.V79V 0.31 TCGA-BA-5555-01 22 43575707 43575707 T C TTLL12 Missense_Mutation p.K253R 0.27 tolerated(0.39) benign(0.002) TCGA-BA-5555-01 22 50591608 50591608 G A MOV10L1 Silent p.L1009L 0.26 TCGA-BA-5555-01 22 50721196 50721196 G C PLXNB2 Missense_Mutation p.F977L 0.14 deleterious(0) probably_damaging(0.998) TCGA-BA-5555-01 2 101089969 101089969 A T NMS Missense_Mutation p.S51C 0.25 deleterious(0.05) benign(0.253) TCGA-BA-5555-01 2 102452401 102452401 T G MAP4K4 Missense_Mutation p.I245S 0.22 deleterious_low_confidence(0) unknown(0) TCGA-BA-5555-01 2 108863794 108863794 T C SULT1C3 Silent p.D48D 0.10 TCGA-BA-5555-01 2 112638249 112638249 C T ANAPC1 Missense_Mutation p.D52N 0.15 tolerated(0.13) probably_damaging(0.998) TCGA-BA-5555-01 2 114501302 114501302 C A SLC35F5 Missense_Mutation p.D184Y 0.24 deleterious(0) possibly_damaging(0.823) TCGA-BA-5555-01 2 120718402 120718402 G T PTPN4 Missense_Mutation p.S718I 0.29 deleterious(0) benign(0.238) TCGA-BA-5555-01 2 132020968 132020968 A G POTEE Missense_Mutation p.E647G 0.31 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-BA-5555-01 2 153591558 153591558 A T ARL6IP6 Missense_Mutation p.S169C 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-BA-5555-01 2 179432093 179432093 C T TTN Missense_Mutation p.A26256T 0.02 TCGA-BA-5555-01 2 198351644 198351644 T C HSPD1 3'UTR 0.31 TCGA-BA-5555-01 2 210654312 210654312 G T UNC80 Missense_Mutation p.D261Y 0.19 possibly_damaging(0.808) TCGA-BA-5555-01 2 32891707 32891707 T A TTC27 Missense_Mutation p.L271M 0.36 tolerated(0.09) possibly_damaging(0.893) TCGA-BA-5555-01 2 46603862 46603862 C A EPAS1 Missense_Mutation p.P407T 0.29 deleterious(0) possibly_damaging(0.659) TCGA-BA-5555-01 2 55252252 55252252 T C RTN4 Missense_Mutation p.I995V 0.28 tolerated(0.96) benign(0.002) TCGA-BA-5555-01 2 90139517 90139517 C A IGKV1D-16 Silent p.T96T 0.22 TCGA-BA-5555-01 3 184069802 184069802 T G CLCN2 Missense_Mutation p.K805T 0.76 deleterious(0.01) probably_damaging(0.984) TCGA-BA-5555-01 3 195780420 195780420 G T TFRC Missense_Mutation p.L637M 0.56 deleterious(0) probably_damaging(1) TCGA-BA-5555-01 3 71247445 71247445 C A FOXP1 Missense_Mutation p.G30C 0.37 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-BA-5555-01 4 10023070 10023070 G A SLC2A9 5'UTR 0.42 TCGA-BA-5555-01 4 111474548 111474548 A G ENPEP Missense_Mutation p.N860S 0.48 tolerated(0.08) benign(0.344) TCGA-BA-5555-01 4 159782919 159782919 G A FNIP2 Missense_Mutation p.A486T 0.49 deleterious(0) probably_damaging(0.994) TCGA-BA-5555-01 4 177113893 177113893 G A SPATA4 Silent p.N191N 0.46 TCGA-BA-5555-01 4 22749649 22749649 T A GBA3 Silent p.S339S 0.48 TCGA-BA-5555-01 4 72429555 72429555 A G SLC4A4 Intron 0.38 TCGA-BA-5555-01 5 127646995 127646995 C G FBN2 Missense_Mutation p.E1691Q 0.43 deleterious(0.04) possibly_damaging(0.889) TCGA-BA-5555-01 5 137346746 137346746 T A FAM13B Missense_Mutation p.N214I 0.53 tolerated(0.21) possibly_damaging(0.739) TCGA-BA-5555-01 5 176637762 176637762 C T NSD1 Nonsense_Mutation p.R788* 0.45 TCGA-BA-5555-01 5 23527862 23527862 G T PRDM9 Missense_Mutation p.V889F 0.13 deleterious(0.02) possibly_damaging(0.693) TCGA-BA-5555-01 5 40981608 40981608 C T C7 Missense_Mutation p.A822V 0.38 tolerated(0.86) benign(0.002) TCGA-BA-5555-01 5 423993 423993 G A AHRR Silent p.Q207Q 0.48 TCGA-BA-5555-01 5 45262156 45262156 G T HCN1 Nonsense_Mutation p.S847* 0.20 TCGA-BA-5555-01 5 5182363 5182363 C G ADAMTS16 Missense_Mutation p.S236R 0.36 tolerated(0.57) benign(0.002) TCGA-BA-5555-01 5 71494697 71494697 G A MAP1B Missense_Mutation p.D1839N 0.47 possibly_damaging(0.844) TCGA-BA-5555-01 6 100390920 100390920 C A MCHR2 Silent p.L164L 0.40 TCGA-BA-5555-01 6 122720877 122720877 T G HSF2 5'UTR 0.33 TCGA-BA-5555-01 6 28269689 28269689 G C PGBD1 Missense_Mutation p.L686F 0.21 deleterious(0.04) probably_damaging(0.974) TCGA-BA-5555-01 6 32168683 32168683 C T NOTCH4 Missense_Mutation p.A1414T 0.45 deleterious(0) possibly_damaging(0.805) TCGA-BA-5555-01 6 32188357 32188357 G A NOTCH4 Silent p.N328N 0.22 TCGA-BA-5555-01 6 32713831 32713831 C T HLA-DQA2 Missense_Mutation p.P199S 0.20 deleterious(0.02) possibly_damaging(0.471) TCGA-BA-5555-01 6 34827076 34827076 C T UHRF1BP1 Silent p.S981S 0.44 TCGA-BA-5555-01 6 38754589 38754589 T C DNAH8 Missense_Mutation p.L598P 0.43 possibly_damaging(0.905) TCGA-BA-5555-01 6 47649207 47649207 A C GPR111 Missense_Mutation p.K304N 0.23 tolerated(0.07) benign(0.015) TCGA-BA-5555-01 6 50016327 50016327 T C DEFB112 Missense_Mutation p.E13G 0.48 deleterious(0.01) unknown(0) TCGA-BA-5555-01 6 57012576 57012576 G T ZNF451 Nonsense_Mutation p.E565* 0.27 TCGA-BA-5555-01 7 130038842 130038842 T A CEP41 Nonsense_Mutation p.K338* 0.37 TCGA-BA-5555-01 7 134215455 134215455 A C AKR1B10 Missense_Mutation p.I43L 0.17 tolerated(0.1) benign(0.02) TCGA-BA-5555-01 7 142099626 142099626 C G TRBV7-8 Missense_Mutation p.G59A 0.31 tolerated(0.32) benign(0.248) TCGA-BA-5555-01 7 142571344 142571344 C A TRPV6 Missense_Mutation p.V549L 0.31 deleterious(0.04) probably_damaging(0.982) TCGA-BA-5555-01 7 150269705 150269705 G T GIMAP4 Missense_Mutation p.G183C 0.12 deleterious(0.04) probably_damaging(0.972) TCGA-BA-5555-01 7 32338306 32338306 G T PDE1C Nonsense_Mutation p.C14* 0.28 TCGA-BA-5555-01 7 4002400 4002400 G A SDK1 Missense_Mutation p.R449H 0.39 tolerated(0.22) benign(0.005) TCGA-BA-5555-01 7 82580369 82580369 C G PCLO Missense_Mutation p.D3179H 0.17 unknown(0) TCGA-BA-5555-01 7 91729178 91729178 G C AKAP9 Missense_Mutation p.D3631H 0.13 probably_damaging(1) TCGA-BA-5555-01 7 94879416 94879416 G T PPP1R9A Nonsense_Mutation p.E749* 0.31 TCGA-BA-5555-01 8 100829989 100829989 G T VPS13B Silent p.V2798V 0.57 TCGA-BA-5555-01 8 125076699 125076699 C T FER1L6 Missense_Mutation p.P1147L 0.41 tolerated(0.13) benign(0.001) TCGA-BA-5555-01 8 131249206 131249206 A T ASAP1 Missense_Mutation p.V74E 0.31 deleterious(0) benign(0.059) TCGA-BA-5555-01 8 133141386 133141386 C T KCNQ3 3'UTR 0.77 TCGA-BA-5555-01 8 134042084 134042084 G T TG Missense_Mutation p.G2352V 0.39 deleterious(0) probably_damaging(1) TCGA-BA-5555-01 8 72229916 72229916 A G EYA1 Missense_Mutation p.W143R 0.30 deleterious(0.02) probably_damaging(0.986) TCGA-BA-5555-01 8 73480044 73480044 G T KCNB2 Silent p.V25V 0.33 TCGA-BA-5555-01 9 115216373 115216373 A G HSDL2 Missense_Mutation p.I316V 0.33 tolerated(0.62) benign(0.002) TCGA-BA-5555-01 9 131743547 131743547 A G NUP188 Missense_Mutation p.Y465C 0.24 deleterious(0) probably_damaging(0.996) TCGA-BA-5555-01 9 136220849 136220849 C A SURF1 Intron 0.30 TCGA-BA-5555-01 9 27950604 27950604 C G LINGO2 Missense_Mutation p.M22I 0.07 tolerated(0.42) benign(0.002) TCGA-BA-5555-01 9 35449831 35449831 G T ATP8B5P RNA 0.60 TCGA-BA-5555-01 9 37015148 37015148 A G PAX5 Missense_Mutation p.S86P 0.42 deleterious(0.02) probably_damaging(0.99) TCGA-BA-5555-01 X 11204464 11204464 C A ARHGAP6 Missense_Mutation p.A389S 0.62 tolerated(0.32) benign(0.01) TCGA-BA-5555-01 X 29972680 29972680 G T IL1RAPL1 Missense_Mutation p.D415Y 0.63 deleterious(0) probably_damaging(0.939) TCGA-BA-5555-01 X 36007603 36007603 G T CXorf22 Missense_Mutation p.G961C 0.56 deleterious(0.01) possibly_damaging(0.794) TCGA-BA-5556-01 10 37430782 37430782 C A ANKRD30A Missense_Mutation p.S263R 0.11 tolerated(0.49) benign(0) TCGA-BA-5556-01 10 8100579 8100579 A G GATA3 Missense_Mutation p.K185E 0.10 deleterious(0.05) possibly_damaging(0.734) TCGA-BA-5556-01 10 95720038 95720038 G A PIPSL RNA 0.14 TCGA-BA-5556-01 10 99196219 99196219 C T EXOSC1 Missense_Mutation p.E191K 0.09 tolerated(0.07) benign(0.006) TCGA-BA-5556-01 11 100179177 100179177 C G CNTN5 Missense_Mutation p.L903V 0.13 tolerated(0.31) benign(0.015) TCGA-BA-5556-01 11 1087951 1087951 C T MUC2 Silent p.F1142F 0.14 TCGA-BA-5556-01 11 122849989 122849989 G A BSX Missense_Mutation p.L147F 0.27 deleterious(0.04) probably_damaging(1) TCGA-BA-5556-01 11 123813728 123813728 C A OR6T1 Missense_Mutation p.G273V 0.24 tolerated(0.83) benign(0.007) TCGA-BA-5556-01 11 128842324 128842324 T A ARHGAP32 Intron 0.08 TCGA-BA-5556-01 11 128842325 128842325 C A ARHGAP32 Intron 0.08 TCGA-BA-5556-01 11 22249037 22249037 G T ANO5 Nonsense_Mutation p.E185* 0.09 TCGA-BA-5556-01 11 35463155 35463155 G A PAMR1 Missense_Mutation p.R320C 0.22 tolerated(0.16) possibly_damaging(0.562) TCGA-BA-5556-01 11 3845337 3845337 C T PGAP2 Silent p.L191L 0.13 TCGA-BA-5556-01 11 47330541 47330541 A G MADD Silent p.K1293K 0.17 TCGA-BA-5556-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.17 deleterious(0) probably_damaging(0.992) TCGA-BA-5556-01 11 55904306 55904306 C A OR8J3 Missense_Mutation p.V297L 0.11 deleterious(0) benign(0.128) TCGA-BA-5556-01 11 57947391 57947391 C T OR9Q1 Missense_Mutation p.R159W 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-BA-5556-01 11 57982965 57982965 C T OR1S1 Missense_Mutation p.A250V 0.18 deleterious(0.03) benign(0.17) TCGA-BA-5556-01 11 64397889 64397889 C T NRXN2 Missense_Mutation p.E1248K 0.12 deleterious(0) probably_damaging(0.975) TCGA-BA-5556-01 11 64536792 64536792 G A SF1 Nonsense_Mutation p.Q353* 0.04 TCGA-BA-5556-01 11 76171120 76171120 T C C11orf30 Missense_Mutation p.Y188H 0.13 tolerated(0.17) benign(0.403) TCGA-BA-5556-01 12 121431330 121431330 C T HNF1A Silent p.T178T 0.13 TCGA-BA-5556-01 12 121461833 121461833 T C OASL Missense_Mutation p.Y336C 0.05 deleterious(0.04) probably_damaging(0.99) TCGA-BA-5556-01 12 15262344 15262344 G A RERG Silent p.N100N 0.17 TCGA-BA-5556-01 12 46316327 46316327 T C SCAF11 Silent p.K1388K 0.16 TCGA-BA-5556-01 12 4721794 4721794 A T DYRK4 Missense_Mutation p.R411W 0.14 deleterious(0) possibly_damaging(0.741) TCGA-BA-5556-01 12 51080428 51080428 A T DIP2B Missense_Mutation p.H505L 0.16 tolerated(0.93) benign(0.003) TCGA-BA-5556-01 12 78452823 78452823 G A NAV3 Missense_Mutation p.R855Q 0.18 tolerated(0.07) probably_damaging(0.981) TCGA-BA-5556-01 13 103710731 103710731 C T SLC10A2 Missense_Mutation p.V127I 0.14 tolerated(1) benign(0.007) TCGA-BA-5556-01 13 24460635 24460635 C T MIPEP Missense_Mutation p.G67E 0.18 tolerated(0.09) benign(0.259) TCGA-BA-5556-01 13 25276139 25276139 T C ATP12A Missense_Mutation p.S656P 0.16 deleterious(0) probably_damaging(0.999) TCGA-BA-5556-01 13 32841345 32841345 C T FRY Missense_Mutation p.S2662L 0.16 deleterious(0.02) benign(0.382) TCGA-BA-5556-01 13 47260079 47260079 G C LRCH1 Missense_Mutation p.C242S 0.12 deleterious(0) probably_damaging(0.999) TCGA-BA-5556-01 13 52313218 52313218 A T WDFY2 Missense_Mutation p.Q211L 0.17 deleterious(0.05) benign(0.055) TCGA-BA-5556-01 13 77625189 77625190 - A MYCBP2 Frame_Shift_Ins p.D4584* 0.12 TCGA-BA-5556-01 13 88329623 88329623 G A SLITRK5 Silent p.S660S 0.13 TCGA-BA-5556-01 13 94482798 94482798 G T GPC6 Missense_Mutation p.K237N 0.12 deleterious(0.03) benign(0.098) TCGA-BA-5556-01 14 106478129 106478129 G A IGHV4-4 Missense_Mutation p.A110V 0.05 deleterious_low_confidence(0) benign(0.308) TCGA-BA-5556-01 14 23355326 23355326 A G REM2 Missense_Mutation p.K205E 0.15 deleterious(0.01) benign(0.434) TCGA-BA-5556-01 14 23444270 23444270 C T AJUBA Missense_Mutation p.R428Q 0.04 deleterious(0) possibly_damaging(0.857) TCGA-BA-5556-01 14 23450566 23450567 - C AJUBA Frame_Shift_Ins p.I304Dfs*2 0.18 TCGA-BA-5556-01 14 39650863 39650863 G T PNN Silent p.V650V 0.04 TCGA-BA-5556-01 14 50863888 50863888 A T CDKL1 5'Flank 0.10 TCGA-BA-5556-01 14 68191267 68191267 C T RDH12 Missense_Mutation p.T49M 0.20 deleterious(0) probably_damaging(1) TCGA-BA-5556-01 14 76642983 76642983 T G GPATCH2L Silent p.T334T 0.15 TCGA-BA-5556-01 14 94711996 94711996 C T PPP4R4 Nonsense_Mutation p.Q473* 0.14 TCGA-BA-5556-01 15 24923846 24923846 T C NPAP1 Silent p.G944G 0.17 TCGA-BA-5556-01 15 31229329 31229329 A G FAN1 Missense_Mutation p.E975G 0.09 deleterious(0) probably_damaging(1) TCGA-BA-5556-01 15 34040349 34040349 C G RYR3 Missense_Mutation p.S2675C 0.14 probably_damaging(0.997) TCGA-BA-5556-01 15 41870164 41870164 A T TYRO3 Missense_Mutation p.N788I 0.08 tolerated(0.15) benign(0.002) TCGA-BA-5556-01 15 43701208 43701209 - G TP53BP1 Frame_Shift_Ins p.C1830Lfs*9 0.10 TCGA-BA-5556-01 15 51806663 51806663 C G DMXL2 Missense_Mutation p.E874Q 0.13 tolerated(0.38) benign(0.239) TCGA-BA-5556-01 15 90328694 90328694 G A ANPEP Silent p.F930F 0.06 TCGA-BA-5556-01 16 3140386 3140386 G A ZSCAN10 Missense_Mutation p.A295V 0.05 deleterious(0.01) benign(0.269) TCGA-BA-5556-01 16 77229463 77229463 G C MON1B Missense_Mutation p.E443Q 0.14 deleterious(0.04) benign(0.128) TCGA-BA-5556-01 16 84050761 84050761 C T SLC38A8 Missense_Mutation p.V313M 0.16 tolerated(0.05) probably_damaging(0.934) TCGA-BA-5556-01 16 90133294 90133294 C T PRDM7 Missense_Mutation p.R109K 0.13 tolerated(0.07) benign(0.157) TCGA-BA-5556-01 17 169309 169309 G A RPH3AL Missense_Mutation p.R85W 0.10 deleterious(0) possibly_damaging(0.846) TCGA-BA-5556-01 17 17788024 17788024 T A TOM1L2 Missense_Mutation p.E142V 0.10 deleterious(0) probably_damaging(0.943) TCGA-BA-5556-01 17 27893561 27893561 C G ABHD15 Missense_Mutation p.G142R 0.09 tolerated(0.11) benign(0.152) TCGA-BA-5556-01 17 38421105 38421105 C T WIPF2 Missense_Mutation p.A226V 0.11 deleterious(0.03) possibly_damaging(0.549) TCGA-BA-5556-01 17 44109631 44109631 G A KANSL1 Nonsense_Mutation p.Q958* 0.13 TCGA-BA-5556-01 17 54230890 54230890 G A ANKFN1 Missense_Mutation p.R7K 0.08 tolerated_low_confidence(0.66) benign(0) TCGA-BA-5556-01 17 57181722 57181722 T C TRIM37 Missense_Mutation p.M19V 0.14 deleterious(0.01) possibly_damaging(0.898) TCGA-BA-5556-01 17 60050211 60050211 G A MED13 Missense_Mutation p.L1282F 0.19 deleterious(0) probably_damaging(0.999) TCGA-BA-5556-01 17 60678092 60678092 A G TLK2 Missense_Mutation p.E544G 0.16 deleterious(0) probably_damaging(0.996) TCGA-BA-5556-01 17 67197795 67197795 C T ABCA10 Missense_Mutation p.G341R 0.07 tolerated(1) benign(0) TCGA-BA-5556-01 17 72480312 72480312 T A CD300A 3'UTR 0.10 TCGA-BA-5556-01 17 80006664 80006664 G A RFNG Missense_Mutation p.L312F 0.07 tolerated(0.13) probably_damaging(0.934) TCGA-BA-5556-01 19 12734621 12734621 C G ZNF791 Missense_Mutation p.F37L 0.13 tolerated(0.26) benign(0.007) TCGA-BA-5556-01 19 17038893 17038893 T C CPAMD8 Missense_Mutation p.Y1146C 0.04 deleterious(0.01) probably_damaging(0.951) TCGA-BA-5556-01 19 22155688 22155688 A T ZNF208 Silent p.T716T 0.09 TCGA-BA-5556-01 19 35231761 35231761 A G ZNF181 Missense_Mutation p.I159V 0.18 tolerated(0.18) benign(0.002) TCGA-BA-5556-01 19 40928872 40928872 G C SERTAD1 Silent p.L194L 0.17 TCGA-BA-5556-01 19 45561107 45561107 G A CLASRP Silent p.A188A 0.11 TCGA-BA-5556-01 19 46032622 46032622 G A OPA3 Silent p.L79L 0.12 TCGA-BA-5556-01 19 47865870 47865870 G A DHX34 Missense_Mutation p.A505T 0.15 tolerated(0.16) probably_damaging(0.94) TCGA-BA-5556-01 19 7806140 7806140 G A CD209 3'UTR 0.26 TCGA-BA-5556-01 1 100736125 100736125 C T RTCA Silent p.L114L 0.13 TCGA-BA-5556-01 1 109342874 109342874 A G STXBP3 Silent p.E494E 0.12 TCGA-BA-5556-01 1 150240393 150240393 T C APH1A Missense_Mutation p.Q83R 0.14 deleterious(0.01) probably_damaging(0.966) TCGA-BA-5556-01 1 215972260 215972260 T A USH2A Missense_Mutation p.N3316I 0.21 benign(0) TCGA-BA-5556-01 1 216390860 216390860 G A USH2A Missense_Mutation p.A1009V 0.15 benign(0.314) TCGA-BA-5556-01 1 220826574 220826574 G C MARK1 Missense_Mutation p.R623P 0.13 deleterious(0.02) probably_damaging(0.988) TCGA-BA-5556-01 1 230845931 230845931 C T AGT Silent p.P222P 0.05 TCGA-BA-5556-01 1 240656540 240656540 C T GREM2 Missense_Mutation p.R79Q 0.14 tolerated(0.11) benign(0.389) TCGA-BA-5556-01 1 24202069 24202069 G C CNR2 Silent p.S13S 0.11 TCGA-BA-5556-01 1 247978538 247978538 G A OR14A16 Missense_Mutation p.S165F 0.19 deleterious(0.02) possibly_damaging(0.889) TCGA-BA-5556-01 1 36755247 36755247 G T THRAP3 Nonsense_Mutation p.E543* 0.10 TCGA-BA-5556-01 1 53543413 53543413 C T PODN Silent p.R313R 0.16 TCGA-BA-5556-01 20 35684633 35684633 T A RBL1 Missense_Mutation p.I427F 0.19 deleterious(0.03) probably_damaging(0.978) TCGA-BA-5556-01 20 44676687 44676687 C T SLC12A5 Missense_Mutation p.R682C 0.10 deleterious(0) probably_damaging(0.977) TCGA-BA-5556-01 20 45131097 45131097 T A ZNF334 Missense_Mutation p.E294V 0.17 tolerated(0.09) possibly_damaging(0.773) TCGA-BA-5556-01 21 10934054 10934054 T A TPTE Missense_Mutation p.N308I 0.04 deleterious(0) probably_damaging(0.999) TCGA-BA-5556-01 21 15399782 15399782 G A AP001347.6 RNA 0.19 TCGA-BA-5556-01 21 27269978 27269978 C T APP Silent p.G657G 0.11 TCGA-BA-5556-01 21 30959875 30959875 G T GRIK1 Missense_Mutation p.T535N 0.06 tolerated(0.28) benign(0.054) TCGA-BA-5556-01 21 38610786 38610786 T C DSCR3 Missense_Mutation p.Y109C 0.04 deleterious(0) probably_damaging(1) TCGA-BA-5556-01 21 41032541 41032541 C A B3GALT5 Missense_Mutation p.L19I 0.12 tolerated(0.09) benign(0.051) TCGA-BA-5556-01 21 48022218 48022218 G C S100B Missense_Mutation p.I37M 0.13 tolerated(0.31) possibly_damaging(0.655) TCGA-BA-5556-01 22 39918604 39918604 C A ATF4 Silent p.P351P 0.11 TCGA-BA-5556-01 22 41257198 41257198 C T DNAJB7 Silent p.E267E 0.15 TCGA-BA-5556-01 22 43032788 43032788 C T CYB5R3 Missense_Mutation p.R62H 0.22 deleterious(0.02) benign(0.004) TCGA-BA-5556-01 2 132240222 132240222 C T TUBA3D Missense_Mutation p.A385V 0.15 tolerated_low_confidence(0.1) possibly_damaging(0.527) TCGA-BA-5556-01 2 141027862 141027862 T C LRP1B Missense_Mutation p.Y4399C 0.08 possibly_damaging(0.759) TCGA-BA-5556-01 2 141571360 141571360 T A LRP1B Missense_Mutation p.Y1742F 0.11 benign(0.153) TCGA-BA-5556-01 2 187364950 187364950 C G ZC3H15 Missense_Mutation p.D73E 0.10 tolerated(0.49) benign(0.008) TCGA-BA-5556-01 2 202149860 202149860 C G CASP8 Nonsense_Mutation p.S434* 0.18 TCGA-BA-5556-01 2 220037648 220037648 C A CNPPD1 Missense_Mutation p.C298F 0.11 tolerated_low_confidence(0.37) benign(0.002) TCGA-BA-5556-01 2 27890212 27890212 A G SLC4A1AP Missense_Mutation p.I367V 0.17 deleterious(0.04) benign(0.082) TCGA-BA-5556-01 2 40656013 40656013 C T SLC8A1 Missense_Mutation p.D470N 0.10 deleterious(0) benign(0.054) TCGA-BA-5556-01 3 108269963 108269963 C G KIAA1524 3'UTR 0.17 TCGA-BA-5556-01 3 139236456 139236456 G T RBP1 3'UTR 0.11 TCGA-BA-5556-01 3 142388320 142388320 C T PLS1 Silent p.R53R 0.12 TCGA-BA-5556-01 3 147114229 147114229 T G ZIC4 Missense_Mutation p.Q83P 0.18 tolerated_low_confidence(0.23) possibly_damaging(0.888) TCGA-BA-5556-01 3 151045645 151045645 A G P2RY13 3'UTR 0.20 TCGA-BA-5556-01 3 157160520 157160520 C T PTX3 Missense_Mutation p.H300Y 0.09 tolerated(0.1) possibly_damaging(0.85) TCGA-BA-5556-01 3 164908254 164908254 T C SLITRK3 Missense_Mutation p.N122S 0.16 tolerated(0.11) benign(0.002) TCGA-BA-5556-01 3 37555268 37555268 C T ITGA9 Silent p.F304F 0.15 TCGA-BA-5556-01 3 50095359 50095359 G A RBM6 Missense_Mutation p.R631K 0.12 tolerated(0.18) benign(0.021) TCGA-BA-5556-01 3 56681252 56681252 C A FAM208A Splice_Site p.X505_splice 0.16 TCGA-BA-5556-01 4 103225561 103225561 G A SLC39A8 Silent p.I251I 0.10 TCGA-BA-5556-01 4 57267496 57267496 C T PPAT Missense_Mutation p.D296N 0.07 tolerated(0.09) benign(0.001) TCGA-BA-5556-01 4 69184292 69184292 T C YTHDC1 Missense_Mutation p.N590S 0.09 tolerated(0.11) benign(0.068) TCGA-BA-5556-01 4 79285132 79285132 C T FRAS1 Silent p.L882L 0.11 TCGA-BA-5556-01 4 89192268 89192268 C T PPM1K Intron 0.06 TCGA-BA-5556-01 4 89591032 89591032 G A HERC3 Missense_Mutation p.C552Y 0.14 deleterious(0.03) possibly_damaging(0.656) TCGA-BA-5556-01 5 102487035 102487035 A T PPIP5K2 Nonsense_Mutation p.K329* 0.20 TCGA-BA-5556-01 5 133295208 133295208 T C C5orf15 Missense_Mutation p.I215V 0.13 tolerated(1) benign(0.013) TCGA-BA-5556-01 5 140073602 140073602 G A HARS2 Missense_Mutation p.G89E 0.19 deleterious(0) probably_damaging(0.998) TCGA-BA-5556-01 5 140536984 140536984 C A PCDHB17 Missense_Mutation p.H470N 0.12 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-BA-5556-01 5 140615679 140615679 C A PCDHB18 RNA 0.10 TCGA-BA-5556-01 5 140798230 140798230 C A PCDHGB7 Missense_Mutation p.D268E 0.15 deleterious(0) probably_damaging(1) TCGA-BA-5556-01 5 161128920 161128920 C A GABRA6 3'UTR 0.31 TCGA-BA-5556-01 5 41018010 41018010 G A MROH2B Silent p.T942T 0.33 TCGA-BA-5556-01 6 160106063 160106063 C T SOD2 Missense_Mutation p.E116K 0.13 tolerated(0.19) benign(0.004) TCGA-BA-5556-01 6 49667570 49667570 C G CRISP2 Missense_Mutation p.R73T 0.13 tolerated(0.06) benign(0.031) TCGA-BA-5556-01 7 100683048 100683048 C A MUC17 Missense_Mutation p.T2784N 0.02 unknown(0) TCGA-BA-5556-01 7 100686329 100686329 A G MUC17 Missense_Mutation p.T3878A 0.17 benign(0.001) TCGA-BA-5556-01 7 100843751 100843751 A T MOGAT3 Missense_Mutation p.L52H 0.20 tolerated(0.06) probably_damaging(0.992) TCGA-BA-5556-01 7 110762919 110762919 C A LRRN3 Silent p.R31R 0.12 TCGA-BA-5556-01 7 129297354 129297354 G T NRF1 Missense_Mutation p.D55Y 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-BA-5556-01 7 154379865 154379865 G T DPP6 Intron 0.26 TCGA-BA-5556-01 7 2409152 2409152 G T EIF3B Silent p.V483V 0.12 TCGA-BA-5556-01 7 2409153 2409153 C T EIF3B Missense_Mutation p.P484S 0.12 tolerated(0.1) possibly_damaging(0.634) TCGA-BA-5556-01 7 83606507 83606507 G A SEMA3A Missense_Mutation p.T553I 0.13 tolerated(0.07) probably_damaging(0.998) TCGA-BA-5556-01 8 100523369 100523369 A T VPS13B Missense_Mutation p.H1446L 0.18 deleterious(0) possibly_damaging(0.888) TCGA-BA-5556-01 8 104432504 104432504 A G DCAF13 Missense_Mutation p.Y180C 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-BA-5556-01 8 133851650 133851650 A T PHF20L1 Missense_Mutation p.K737I 0.05 deleterious(0) possibly_damaging(0.482) TCGA-BA-5556-01 8 139601676 139601676 G A COL22A1 Silent p.P1567P 0.10 TCGA-BA-5556-01 8 53055550 53055550 G A ST18 Missense_Mutation p.A703V 0.11 tolerated(1) benign(0.012) TCGA-BA-5556-01 8 54730074 54730074 A G ATP6V1H Missense_Mutation p.V108A 0.20 tolerated(0.13) probably_damaging(0.942) TCGA-BA-5556-01 8 85774590 85774590 G A RALYL Missense_Mutation p.R171H 0.16 tolerated(0.08) benign(0.414) TCGA-BA-5556-01 8 86158008 86158008 C G CA13 5'UTR 0.05 TCGA-BA-5556-01 8 87470164 87470165 - A WWP1 Frame_Shift_Ins p.M804Nfs*5 0.18 TCGA-BA-5556-01 9 130446647 130446647 G A STXBP1 Missense_Mutation p.G568D 0.21 deleterious(0) possibly_damaging(0.743) TCGA-BA-5556-01 9 132854651 132854651 G A GPR107 Missense_Mutation p.R285Q 0.27 tolerated(0.34) possibly_damaging(0.72) TCGA-BA-5556-01 9 140059797 140059797 C T GRIN1 Intron 0.22 TCGA-BA-5556-01 9 140087090 140087090 G A TPRN Silent p.S593S 0.05 TCGA-BA-5556-01 9 14801743 14801743 A G FREM1 Missense_Mutation p.F1201L 0.08 tolerated(0.32) benign(0.001) TCGA-BA-5556-01 9 34255735 34255735 C T KIF24 Silent p.A1290A 0.11 TCGA-BA-5556-01 9 95993222 95993222 C T WNK2 Missense_Mutation p.R303W 0.23 unknown(0) TCGA-BA-5556-01 X 101909693 101909693 G T GPRASP1 Missense_Mutation p.R284S 0.07 tolerated(0.15) benign(0.071) TCGA-BA-5556-01 X 102755663 102755663 C A RAB40A Missense_Mutation p.D8Y 0.11 deleterious(0.04) benign(0.179) TCGA-BA-5556-01 X 117582909 117582909 G A WDR44 Missense_Mutation p.A901T 0.15 tolerated(0.1) benign(0.017) TCGA-BA-5556-01 X 119059129 119059129 A C NKAP 3'UTR 0.12 TCGA-BA-5556-01 X 120008795 120008795 G A CT47B1 Missense_Mutation p.P244S 0.14 tolerated(0.15) unknown(0) TCGA-BA-5556-01 X 12701661 12701661 C A FRMPD4 Silent p.V176V 0.13 TCGA-BA-5556-01 X 146312342 146312342 G T MIR506 RNA 0.14 TCGA-BA-5556-01 X 152159412 152159412 G T PNMA5 Missense_Mutation p.S244Y 0.13 deleterious(0.05) possibly_damaging(0.614) TCGA-BA-5556-01 X 152226640 152226640 C T PNMA3 Missense_Mutation p.R410C 0.10 deleterious(0.01) benign(0.13) TCGA-BA-5556-01 X 18972501 18972501 G T PHKA2 Missense_Mutation p.S36R 0.16 deleterious(0) benign(0.213) TCGA-BA-5556-01 X 20211697 20211697 T A RPS6KA3 Missense_Mutation p.E167D 0.07 deleterious(0) probably_damaging(0.998) TCGA-BA-5556-01 X 31526345 31526345 T A DMD Intron 0.10 TCGA-BA-5556-01 X 48826129 48826129 C T KCND1 Missense_Mutation p.A184T 0.26 tolerated(0.45) benign(0.007) TCGA-BA-5556-01 X 69626750 69626750 C T KIF4A Missense_Mutation p.P1027L 0.13 tolerated(0.12) benign(0.027) TCGA-BA-5556-01 X 70349995 70349995 T C MED12 Silent p.Y1326Y 0.11 TCGA-BA-5556-01 X 76814235 76814235 C T ATRX Missense_Mutation p.A2137T 0.15 possibly_damaging(0.459) TCGA-BA-5556-01 X 76939409 76939409 C T ATRX Missense_Mutation p.E447K 0.13 benign(0.242) TCGA-BA-5556-01 X 77224509 77224509 G A PGAM4 Silent p.N209N 0.04 TCGA-BA-5557-01 10 76789551 76789551 G C KAT6B Missense_Mutation p.D1657H 0.04 probably_damaging(0.999) TCGA-BA-5557-01 11 123481027 123481027 C A GRAMD1B Silent p.R491R 0.05 TCGA-BA-5557-01 11 133791120 133791120 C T IGSF9B Missense_Mutation p.V834M 0.07 deleterious(0) possibly_damaging(0.454) TCGA-BA-5557-01 11 45671747 45671747 G A CHST1 Missense_Mutation p.R243C 0.05 deleterious(0) probably_damaging(1) TCGA-BA-5557-01 11 5080386 5080386 C T OR52E2 Missense_Mutation p.V158I 0.16 tolerated(0.39) benign(0.062) TCGA-BA-5557-01 11 55904529 55904529 A T OR8J3 Silent p.V222V 0.05 TCGA-BA-5557-01 11 66278499 66278499 G A BBS1 Silent p.S21S 0.08 TCGA-BA-5557-01 12 122211410 122211410 C G TMEM120B Missense_Mutation p.L255V 0.21 deleterious(0.01) probably_damaging(0.941) TCGA-BA-5557-01 12 123482002 123482002 C T PITPNM2 Missense_Mutation p.D448N 0.12 deleterious(0) probably_damaging(0.995) TCGA-BA-5557-01 12 4920108 4920108 T C KCNA6 Silent p.L301L 0.27 TCGA-BA-5557-01 12 9318713 9318713 C A PZP Silent p.G731G 0.11 TCGA-BA-5557-01 12 988824 988824 C G WNK1 Missense_Mutation p.S820C 0.10 deleterious(0.04) probably_damaging(0.96) TCGA-BA-5557-01 16 48211016 48211016 G A ABCC11 Silent p.V1119V 0.08 TCGA-BA-5557-01 17 1960080 1960080 C G HIC1 Missense_Mutation p.I51M 0.14 deleterious(0) possibly_damaging(0.767) TCGA-BA-5557-01 17 5012303 5012303 C T ZNF232 Silent p.E181E 0.07 TCGA-BA-5557-01 17 56429504 56429504 G A SUPT4H1 5'UTR 0.09 TCGA-BA-5557-01 17 65548417 65548417 A G PITPNC1 Missense_Mutation p.Y81C 0.11 deleterious(0) probably_damaging(1) TCGA-BA-5557-01 17 7578247 7578247 A T TP53 Nonsense_Mutation p.L201* 0.17 TCGA-BA-5557-01 19 39805434 39805434 C T LRFN1 Silent p.A181A 0.19 TCGA-BA-5557-01 19 39913429 39913429 G A PLEKHG2 Missense_Mutation p.E579K 0.06 tolerated_low_confidence(0.07) benign(0.011) TCGA-BA-5557-01 19 49261276 49261276 G A FGF21 Silent p.P143P 0.18 TCGA-BA-5557-01 19 54779802 54779802 C T LILRB2 Intron 0.08 TCGA-BA-5557-01 19 55670503 55670503 G A DNAAF3 Missense_Mutation p.S585L 0.14 tolerated_low_confidence(0.15) benign(0.003) TCGA-BA-5557-01 19 56369450 56369450 G A NLRP4 Missense_Mutation p.D231N 0.07 deleterious(0) probably_damaging(0.999) TCGA-BA-5557-01 1 15361331 15361331 C T KAZN Missense_Mutation p.R169C 0.09 deleterious(0) possibly_damaging(0.853) TCGA-BA-5557-01 1 154221860 154221862 CCT - UBAP2L In_Frame_Del p.S389del 0.11 TCGA-BA-5557-01 1 218609454 218609454 G A TGFB2 Silent p.R327R 0.08 TCGA-BA-5557-01 1 22186712 22186712 C T HSPG2 Missense_Mutation p.V1658M 0.12 benign(0.384) TCGA-BA-5557-01 1 248436658 248436658 G A OR2T33 Silent p.D153D 0.06 TCGA-BA-5557-01 1 91182792 91182792 G A BARHL2 5'UTR 0.16 TCGA-BA-5557-01 20 10626068 10626068 G A JAG1 Silent p.R683R 0.16 TCGA-BA-5557-01 20 34519268 34519268 G C PHF20 Missense_Mutation p.Q734H 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-BA-5557-01 20 34519277 34519277 G A PHF20 Silent p.K737K 0.07 TCGA-BA-5557-01 21 19666941 19666941 G A TMPRSS15 Missense_Mutation p.R764W 0.06 tolerated(0.18) benign(0.001) TCGA-BA-5557-01 22 21989343 21989343 G A CCDC116 Missense_Mutation p.D331N 0.18 tolerated(0.48) benign(0.274) TCGA-BA-5557-01 22 41257532 41257532 C T DNAJB7 Missense_Mutation p.G156E 0.07 tolerated(0.06) benign(0.009) TCGA-BA-5557-01 22 50720062 50720062 G A PLXNB2 Missense_Mutation p.P1152L 0.08 deleterious(0) probably_damaging(0.976) TCGA-BA-5557-01 2 179659934 179659934 A G TTN Silent p.S320S 0.13 TCGA-BA-5557-01 2 232081457 232081457 C T ARMC9 Missense_Mutation p.P152L 0.06 deleterious(0) probably_damaging(1) TCGA-BA-5557-01 3 108688549 108688549 C G MORC1 Missense_Mutation p.Q857H 0.04 tolerated(0.09) benign(0.003) TCGA-BA-5557-01 3 121363742 121363742 C G HCLS1 Missense_Mutation p.E108Q 0.12 tolerated(0.18) possibly_damaging(0.728) TCGA-BA-5557-01 3 145788905 145788905 C T PLOD2 Missense_Mutation p.R682H 0.16 deleterious(0) possibly_damaging(0.781) TCGA-BA-5557-01 4 72425867 72425867 C A SLC4A4 Missense_Mutation p.L999I 0.20 deleterious(0) probably_damaging(0.999) TCGA-BA-5557-01 5 140595010 140595010 G A PCDHB13 Missense_Mutation p.V439M 0.14 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-BA-5557-01 5 167182030 167182030 G A TENM2 Intron 0.06 TCGA-BA-5557-01 5 175392028 175392028 G A THOC3 Silent p.V185V 0.04 TCGA-BA-5557-01 5 96222495 96222495 T A ERAP2 Splice_Site p.X283_splice 0.14 TCGA-BA-5557-01 7 102040012 102040012 G A PRKRIP1 Missense_Mutation p.G75S 0.14 tolerated(0.07) possibly_damaging(0.817) TCGA-BA-5557-01 7 4899722 4899722 C G PAPOLB Missense_Mutation p.E573Q 0.08 tolerated(0.18) possibly_damaging(0.675) TCGA-BA-5557-01 8 42147786 42147786 C G IKBKB Missense_Mutation p.R105G 0.22 deleterious(0) probably_damaging(1) TCGA-BA-5557-01 9 21971110 21971110 T C CDKN2A Missense_Mutation p.H83R 0.34 deleterious(0) probably_damaging(0.996) TCGA-BA-5557-01 X 102004645 102004645 C A BHLHB9 Missense_Mutation p.A241E 0.09 tolerated(0.41) benign(0.081) TCGA-BA-5557-01 X 10201608 10201608 C A CLCN4 Missense_Mutation p.S756Y 0.06 deleterious(0) possibly_damaging(0.896) TCGA-BA-5557-01 X 118797579 118797579 C T SEPT6 Silent p.G69G 0.20 TCGA-BA-5557-01 X 154467052 154467052 G C VBP1 Splice_Site p.X175_splice 0.05 TCGA-BA-5557-01 X 53570870 53570870 C T HUWE1 Missense_Mutation p.E3771K 0.15 unknown(0) TCGA-BA-5557-01 X 54335724 54335724 C T WNK3 Missense_Mutation p.M245I 0.09 deleterious(0) probably_damaging(0.997) TCGA-BA-5557-01 X 65411985 65411985 A C HEPH Silent p.A413A 0.19 TCGA-BA-5558-01 10 103344392 103344392 G A POLL Silent p.L286L 0.28 TCGA-BA-5558-01 10 103344516 103344516 G C POLL Nonsense_Mutation p.S245* 0.26 TCGA-BA-5558-01 10 115884886 115884886 G A C10orf118 3'UTR 0.19 TCGA-BA-5558-01 10 124803982 124803982 G C ACADSB Missense_Mutation p.R294T 0.21 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 10 127414362 127414362 C T EDRF1 Silent p.F249F 0.19 TCGA-BA-5558-01 10 12866500 12866500 C T CAMK1D Silent p.H290H 0.13 TCGA-BA-5558-01 10 50902489 50902489 G T C10orf53 Intron 0.19 TCGA-BA-5558-01 10 62670718 62670718 C T RHOBTB1 Missense_Mutation p.E75K 0.18 tolerated(0.13) probably_damaging(0.998) TCGA-BA-5558-01 10 70520875 70520875 G C CCAR1 Missense_Mutation p.E678Q 0.23 tolerated(0.11) probably_damaging(0.932) TCGA-BA-5558-01 10 79742408 79742408 C T POLR3A Intron 0.26 TCGA-BA-5558-01 10 98311125 98311125 C G TM9SF3 Missense_Mutation p.G279A 0.17 deleterious(0) probably_damaging(0.966) TCGA-BA-5558-01 11 111385713 111385713 G C C11orf88 Silent p.R68R 0.18 TCGA-BA-5558-01 11 1266832 1266832 G A MUC5B Missense_Mutation p.V2908I 0.18 unknown(0) TCGA-BA-5558-01 11 24518785 24518785 G A LUZP2 5'UTR 0.17 TCGA-BA-5558-01 11 28104463 28104463 G C KIF18A Missense_Mutation p.T401S 0.24 tolerated(0.76) benign(0.002) TCGA-BA-5558-01 11 497968 497968 C G RNH1 Intron 0.22 TCGA-BA-5558-01 11 5068023 5068023 G C OR52J3 Missense_Mutation p.D90H 0.14 tolerated(0.22) benign(0.019) TCGA-BA-5558-01 11 57004030 57004030 G A APLNR Missense_Mutation p.T150M 0.11 tolerated(0.08) possibly_damaging(0.82) TCGA-BA-5558-01 11 61039224 61039224 G C VWCE Missense_Mutation p.L570V 0.11 tolerated(0.31) benign(0.279) TCGA-BA-5558-01 11 63283757 63283757 G A LGALS12 Silent p.A302A 0.26 TCGA-BA-5558-01 11 64519416 64519416 T A PYGM Missense_Mutation p.H583L 0.17 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 11 65684765 65684765 G T C11orf68 3'UTR 0.41 TCGA-BA-5558-01 11 93148192 93148192 G A CCDC67 Missense_Mutation p.R517K 0.43 tolerated(0.83) benign(0.046) TCGA-BA-5558-01 12 102046500 102046500 G C MYBPC1 Missense_Mutation p.G499A 0.21 tolerated(0.33) benign(0.308) TCGA-BA-5558-01 12 104064480 104064480 G C STAB2 Missense_Mutation p.D756H 0.28 deleterious(0) probably_damaging(0.915) TCGA-BA-5558-01 12 106633144 106633144 C T CKAP4 Silent p.L489L 0.26 TCGA-BA-5558-01 12 132195869 132195869 G A SFSWAP Missense_Mutation p.R32Q 0.16 tolerated_low_confidence(0.08) probably_damaging(0.988) TCGA-BA-5558-01 12 333247 333247 G A SLC6A13 Missense_Mutation p.H408Y 0.29 deleterious(0.05) benign(0.154) TCGA-BA-5558-01 12 49434325 49434325 G A KMT2D Nonsense_Mutation p.R2410* 0.16 TCGA-BA-5558-01 12 53680494 53680494 C T ESPL1 Missense_Mutation p.S1325F 0.24 deleterious(0.02) benign(0.308) TCGA-BA-5558-01 12 57872434 57872434 C G ARHGAP9 Missense_Mutation p.R141S 0.19 deleterious(0.01) benign(0.135) TCGA-BA-5558-01 12 62261196 62261196 C G FAM19A2 Missense_Mutation p.R4T 0.17 deleterious_low_confidence(0) benign(0.115) TCGA-BA-5558-01 12 6691446 6691446 C T CHD4 Missense_Mutation p.A1458T 0.24 deleterious(0.02) probably_damaging(0.945) TCGA-BA-5558-01 12 69250400 69250400 C T CPM Silent p.Q383Q 0.20 TCGA-BA-5558-01 12 7045557 7045557 C T ATN1 Missense_Mutation p.S376L 0.25 possibly_damaging(0.762) TCGA-BA-5558-01 12 96691104 96691104 C G CDK17 Missense_Mutation p.D273H 0.12 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 13 30096553 30096553 C G SLC7A1 Missense_Mutation p.A364P 0.16 deleterious(0) probably_damaging(0.988) TCGA-BA-5558-01 13 67800883 67800883 C A PCDH9 Missense_Mutation p.D564Y 0.17 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 13 79933752 79933752 G A RBM26 Missense_Mutation p.S496F 0.26 deleterious(0) possibly_damaging(0.822) TCGA-BA-5558-01 13 95233394 95233394 G C TGDS Missense_Mutation p.S169C 0.16 deleterious(0) probably_damaging(0.99) TCGA-BA-5558-01 14 105850745 105850745 C G PACS2 Missense_Mutation p.F612L 0.24 tolerated(0.99) benign(0.016) TCGA-BA-5558-01 14 106967190 106967190 G A IGHV1-46 Silent p.I70I 0.20 TCGA-BA-5558-01 14 22521054 22521054 G A TRAV21 Silent p.Q25Q 0.17 TCGA-BA-5558-01 14 23745733 23745733 C T HOMEZ Missense_Mutation p.R235K 0.25 tolerated(0.52) benign(0.004) TCGA-BA-5558-01 14 23816792 23816792 G A SLC22A17 Missense_Mutation p.R365W 0.26 deleterious(0) probably_damaging(0.998) TCGA-BA-5558-01 14 64682812 64682812 T A SYNE2 Intron 0.20 TCGA-BA-5558-01 14 95670229 95670229 G A CLMN Missense_Mutation p.S486F 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.736) TCGA-BA-5558-01 14 95906119 95906119 C A SYNE3 Missense_Mutation p.R692S 0.23 deleterious(0.03) benign(0.279) TCGA-BA-5558-01 15 65357567 65357567 C T RASL12 Missense_Mutation p.D50N 0.29 deleterious(0.01) probably_damaging(1) TCGA-BA-5558-01 15 79382902 79382902 C G RASGRF1 5'UTR 0.35 TCGA-BA-5558-01 15 83495204 83495204 G A WHAMM Missense_Mutation p.E501K 0.21 tolerated(0.29) benign(0.011) TCGA-BA-5558-01 15 85341666 85341666 C G ZNF592 Silent p.L899L 0.31 TCGA-BA-5558-01 15 87097594 87097594 T C AGBL1 Silent p.T894T 0.36 TCGA-BA-5558-01 16 19063127 19063127 C G TMC7 Missense_Mutation p.I620M 0.18 tolerated(0.06) benign(0.364) TCGA-BA-5558-01 16 30456439 30456439 C T SEPHS2 Missense_Mutation p.E204K 0.25 benign(0.093) TCGA-BA-5558-01 16 30456870 30456870 C T SEPHS2 Nonsense_Mutation p.Sec60* 0.45 TCGA-BA-5558-01 16 30976423 30976423 G A SETD1A Missense_Mutation p.E454K 0.20 benign(0.005) TCGA-BA-5558-01 16 4863755 4863755 C T GLYR1 Missense_Mutation p.V368I 0.17 tolerated(0.91) benign(0.018) TCGA-BA-5558-01 16 53730193 53730193 G A RPGRIP1L Missense_Mutation p.R34W 0.22 deleterious(0.05) benign(0.004) TCGA-BA-5558-01 16 58031982 58031982 G - ZNF319 Frame_Shift_Del p.P63Hfs*96 0.38 TCGA-BA-5558-01 16 58608533 58608533 G C CNOT1 Silent p.A653A 0.22 TCGA-BA-5558-01 16 70513582 70513582 G A FUK Silent p.%3D 0.22 TCGA-BA-5558-01 16 711778 711778 C T WDR90 Silent p.I1285I 0.24 TCGA-BA-5558-01 16 716485 716485 C T WDR90 Silent p.L1591L 0.24 TCGA-BA-5558-01 17 11738200 11738200 C G DNAH9 Silent p.L3164L 0.11 TCGA-BA-5558-01 17 21477512 21477512 C T AC138710.1 5'Flank 0.29 TCGA-BA-5558-01 17 28512309 28512309 G A NSRP1 Missense_Mutation p.D432N 0.23 deleterious(0.04) benign(0.02) TCGA-BA-5558-01 17 43221074 43221074 C T ACBD4 3'UTR 0.30 TCGA-BA-5558-01 17 45422422 45422422 G A EFCAB13 Missense_Mutation p.D159N 0.22 tolerated(0.21) benign(0.01) TCGA-BA-5558-01 17 53040725 53040725 C G COX11 Missense_Mutation p.G197A 0.21 deleterious(0) probably_damaging(0.999) TCGA-BA-5558-01 17 60342553 60342553 G A TBC1D3P2 3'Flank 0.13 TCGA-BA-5558-01 17 68171901 68171901 G A KCNJ2 Missense_Mutation p.E241K 0.27 deleterious(0) possibly_damaging(0.895) TCGA-BA-5558-01 17 7386198 7386198 T A SLC35G6 Missense_Mutation p.Y299N 0.24 tolerated(0.12) benign(0.009) TCGA-BA-5558-01 17 74085376 74085376 C T EXOC7 Silent p.E360E 0.29 TCGA-BA-5558-01 17 7464260 7464260 C T TNFSF12-TNFSF13 3'UTR 0.25 TCGA-BA-5558-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.26 deleterious(0) probably_damaging(0.997) TCGA-BA-5558-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.25 tolerated(0.11) benign(0.308) TCGA-BA-5558-01 17 78681774 78681774 A G RPTOR Missense_Mutation p.N161S 0.27 deleterious(0) possibly_damaging(0.514) TCGA-BA-5558-01 17 7983140 7983140 C T ALOX12B Missense_Mutation p.D292N 0.25 tolerated(0.08) benign(0.421) TCGA-BA-5558-01 17 7983186 7983186 C G ALOX12B Silent p.L276L 0.14 TCGA-BA-5558-01 17 79890946 79890946 G T PYCR1 3'UTR 0.40 TCGA-BA-5558-01 18 29867529 29867529 C A GAREM Missense_Mutation p.R344L 0.33 deleterious(0) probably_damaging(0.993) TCGA-BA-5558-01 18 30092779 30092779 C T WBP11P1 RNA 0.32 TCGA-BA-5558-01 18 47563335 47563335 C T MYO5B Missense_Mutation p.E114K 0.28 tolerated(0.23) benign(0.347) TCGA-BA-5558-01 19 11545748 11545748 C T CCDC151 Silent p.R30R 0.20 TCGA-BA-5558-01 19 45561076 45561076 C T CLASRP Missense_Mutation p.A178V 0.17 tolerated(0.8) benign(0.012) TCGA-BA-5558-01 19 47935484 47935484 C T SLC8A2 Missense_Mutation p.V777I 0.13 tolerated(0.49) benign(0.405) TCGA-BA-5558-01 19 48801464 48801464 G T CCDC114 Silent p.L421L 0.15 TCGA-BA-5558-01 19 52216936 52216936 C T HAS1 Missense_Mutation p.R494Q 0.56 tolerated(0.08) possibly_damaging(0.769) TCGA-BA-5558-01 19 52709301 52709301 C T PPP2R1A Silent p.Y85Y 0.17 TCGA-BA-5558-01 19 53578367 53578367 G C ZNF160 Missense_Mutation p.Q29E 0.33 deleterious(0) possibly_damaging(0.523) TCGA-BA-5558-01 19 55401040 55401040 G A FCAR Silent p.T225T 0.19 TCGA-BA-5558-01 19 55824413 55824413 G A TMEM150B Silent p.L172L 0.24 TCGA-BA-5558-01 19 57646830 57646830 G C ZIM3 Nonsense_Mutation p.S292* 0.38 TCGA-BA-5558-01 19 57966870 57966870 C T VN1R1 Missense_Mutation p.D329N 0.23 tolerated(0.09) possibly_damaging(0.759) TCGA-BA-5558-01 19 618526 618526 G T POLRMT Missense_Mutation p.D1128E 0.26 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 19 6501305 6501305 G C TUBB4A Missense_Mutation p.F90L 0.15 deleterious_low_confidence(0.01) benign(0.166) TCGA-BA-5558-01 19 9056712 9056712 G A MUC16 Missense_Mutation p.S10245F 0.28 benign(0.293) TCGA-BA-5558-01 1 12979810 12979810 C T PRAMEF7 Silent p.F334F 0.15 TCGA-BA-5558-01 1 148008610 148008610 G C NBPF14 Missense_Mutation p.Q666E 0.17 tolerated(0.44) probably_damaging(0.952) TCGA-BA-5558-01 1 149905309 149905309 G A MTMR11 Silent p.L325L 0.22 TCGA-BA-5558-01 1 150808789 150808789 C T ARNT Missense_Mutation p.E223K 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-5558-01 1 151732598 151732598 C A MRPL9 Missense_Mutation p.K244N 0.26 deleterious(0.03) benign(0.412) TCGA-BA-5558-01 1 154309988 154309988 C A ATP8B2 Silent p.L367L 0.22 TCGA-BA-5558-01 1 154926182 154926182 C T PBXIP1 Missense_Mutation p.D6N 0.31 tolerated(0.09) probably_damaging(0.995) TCGA-BA-5558-01 1 16046258 16046258 C T PLEKHM2 Silent p.Y165Y 0.12 TCGA-BA-5558-01 1 19487411 19487411 C T UBR4 Silent p.Q1802Q 0.28 TCGA-BA-5558-01 1 215848871 215848872 AG - USH2A Frame_Shift_Del p.Y4128Hfs*24 0.24 TCGA-BA-5558-01 1 216369938 216369938 G A USH2A Missense_Mutation p.S1403F 0.23 probably_damaging(0.93) TCGA-BA-5558-01 1 233807328 233807328 G C KCNK1 3'UTR 0.22 TCGA-BA-5558-01 1 241798757 241798757 G A CHML Silent p.Y104Y 0.25 TCGA-BA-5558-01 1 248059077 248059077 C T OR2W3 Silent p.L63L 0.15 TCGA-BA-5558-01 1 3342265 3342265 G A PRDM16 Silent p.Q1020Q 0.18 TCGA-BA-5558-01 1 52280475 52280475 G C NRD1 Missense_Mutation p.L552V 0.17 tolerated(0.1) benign(0.381) TCGA-BA-5558-01 1 57254662 57254662 G A C1orf168 Silent p.P301P 0.20 TCGA-BA-5558-01 1 68659750 68659750 G A WLS Silent p.D87D 0.18 TCGA-BA-5558-01 20 1629897 1629897 G A SIRPG Silent p.I77I 0.23 TCGA-BA-5558-01 20 34806864 34806864 G A EPB41L1 Missense_Mutation p.E779K 0.21 tolerated(0.37) benign(0.428) TCGA-BA-5558-01 20 40979290 40979290 G A PTPRT Nonsense_Mutation p.Q615* 0.17 TCGA-BA-5558-01 20 42355425 42355425 C A GTSF1L 5'UTR 0.32 TCGA-BA-5558-01 20 42825685 42825685 C T OSER1 3'UTR 0.19 TCGA-BA-5558-01 20 42825779 42825779 C T OSER1 Silent p.V264V 0.16 TCGA-BA-5558-01 20 47734390 47734390 G A STAU1 Missense_Mutation p.S478L 0.21 tolerated(0.38) benign(0.001) TCGA-BA-5558-01 21 10863030 10863030 A G IGHV1OR21-1 Missense_Mutation p.D109G 0.10 deleterious(0) probably_damaging(0.999) TCGA-BA-5558-01 21 32007779 32007779 G A KRTAP20-2 Silent p.%3D 0.30 TCGA-BA-5558-01 22 21115663 21115663 G A PI4KA Missense_Mutation p.S907L 0.31 tolerated(0.05) benign(0.014) TCGA-BA-5558-01 2 18745214 18745214 C T NT5C1B Missense_Mutation p.E561K 0.25 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 2 192288708 192288708 C G MYO1B 3'UTR 0.20 TCGA-BA-5558-01 2 198498526 198498526 C G RFTN2 Missense_Mutation p.E212Q 0.30 tolerated(0.11) possibly_damaging(0.826) TCGA-BA-5558-01 2 242312558 242312558 G A FARP2 Silent p.Q12Q 0.32 TCGA-BA-5558-01 2 27560494 27560494 T G GTF3C2 Intron 0.23 TCGA-BA-5558-01 2 31621533 31621533 G A XDH Silent p.C113C 0.24 TCGA-BA-5558-01 2 32641134 32641153 AGTGGAGCCTCCCAAAAAGG - BIRC6 Frame_Shift_Del p.V926Gfs*3 0.19 TCGA-BA-5558-01 2 33813507 33813507 A G FAM98A Silent p.G139G 0.18 TCGA-BA-5558-01 2 61447483 61447483 C T USP34 Missense_Mutation p.R2670Q 0.21 tolerated(0.35) benign(0.103) TCGA-BA-5558-01 2 75921517 75921517 C T GCFC2 Silent p.L290L 0.22 TCGA-BA-5558-01 3 100463729 100463729 G A TFG Silent p.P258P 0.16 TCGA-BA-5558-01 3 119236073 119236073 G A TIMMDC1 Silent p.L206L 0.17 TCGA-BA-5558-01 3 119248743 119248743 C T CD80 Missense_Mutation p.A248T 0.16 tolerated(0.6) benign(0.201) TCGA-BA-5558-01 3 128755858 128755858 G A EFCC1 Silent p.L496L 0.23 TCGA-BA-5558-01 3 134086483 134086483 G A AMOTL2 Silent p.A299A 0.23 TCGA-BA-5558-01 3 141497261 141497261 C T GRK7 Silent p.C45C 0.24 TCGA-BA-5558-01 3 152880843 152880843 G C RAP2B Missense_Mutation p.E121Q 0.36 tolerated(0.06) benign(0.446) TCGA-BA-5558-01 3 170184960 170184960 C G SLC7A14 Missense_Mutation p.Q733H 0.18 deleterious(0.01) possibly_damaging(0.459) TCGA-BA-5558-01 3 184043113 184043113 G A EIF4G1 Silent p.T978T 0.16 TCGA-BA-5558-01 4 100808471 100808471 C T LAMTOR3 Missense_Mutation p.G29R 0.16 deleterious(0) probably_damaging(0.998) TCGA-BA-5558-01 4 108552816 108552816 C G PAPSS1 Missense_Mutation p.K569N 0.20 tolerated(0.2) possibly_damaging(0.46) TCGA-BA-5558-01 4 110612108 110612108 G A CASP6 Nonsense_Mutation p.Q181* 0.20 TCGA-BA-5558-01 4 155256201 155256201 C T DCHS2 Silent p.L345L 0.22 TCGA-BA-5558-01 4 186185722 186185722 C T SNX25 Missense_Mutation p.L124F 0.31 tolerated(0.07) benign(0.013) TCGA-BA-5558-01 4 189064989 189064989 T C TRIML1 Intron 0.25 TCGA-BA-5558-01 4 1976646 1976646 C A WHSC1 Missense_Mutation p.S1143R 0.33 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 4 26719590 26719590 G A TBC1D19 Silent p.L330L 0.25 TCGA-BA-5558-01 4 3444828 3444828 G A HGFAC Missense_Mutation p.R117H 0.14 deleterious(0.02) benign(0.212) TCGA-BA-5558-01 4 72204876 72204876 C G SLC4A4 Intron 0.28 TCGA-BA-5558-01 4 73990774 73990774 A G ANKRD17 Silent p.G1116G 0.25 TCGA-BA-5558-01 5 115783452 115783452 G A SEMA6A Silent p.L650L 0.13 TCGA-BA-5558-01 5 128862009 128862009 G A ADAMTS19 Missense_Mutation p.E310K 0.22 tolerated(0.17) benign(0.071) TCGA-BA-5558-01 5 132400683 132400683 C G HSPA4 Missense_Mutation p.S40C 0.17 deleterious(0.02) probably_damaging(0.971) TCGA-BA-5558-01 5 140165886 140165886 C A PCDHA1 Missense_Mutation p.S4Y 0.18 tolerated_low_confidence(0.14) benign(0.183) TCGA-BA-5558-01 5 145379752 145379752 C T SH3RF2 Silent p.I170I 0.20 TCGA-BA-5558-01 5 161524718 161524718 C T GABRG2 Silent p.V134V 0.18 TCGA-BA-5558-01 5 23526395 23526395 C G PRDM9 Missense_Mutation p.Q400E 0.14 deleterious(0.04) benign(0.134) TCGA-BA-5558-01 5 33649669 33649669 G A ADAMTS12 Missense_Mutation p.R442C 0.06 deleterious(0) probably_damaging(0.998) TCGA-BA-5558-01 5 36985741 36985741 A G NIPBL Missense_Mutation p.N820S 0.04 tolerated_low_confidence(1) benign(0) TCGA-BA-5558-01 5 39392478 39392478 C T DAB2 Missense_Mutation p.E107K 0.14 deleterious(0) possibly_damaging(0.817) TCGA-BA-5558-01 5 58285677 58285677 C T PDE4D Missense_Mutation p.D453N 0.18 deleterious_low_confidence(0.03) benign(0.063) TCGA-BA-5558-01 5 60241016 60241016 C T NDUFAF2 5'UTR 0.31 TCGA-BA-5558-01 5 88018491 88018491 C T MEF2C Missense_Mutation p.R461K 0.20 deleterious(0.03) probably_damaging(0.992) TCGA-BA-5558-01 6 138576900 138576900 G A KIAA1244 Missense_Mutation p.M366I 0.36 deleterious(0.03) possibly_damaging(0.867) TCGA-BA-5558-01 6 167754382 167754382 C T TTLL2 Missense_Mutation p.R332C 0.24 deleterious(0.03) benign(0.111) TCGA-BA-5558-01 6 22297280 22297280 C T PRL 5'UTR 0.22 TCGA-BA-5558-01 6 27114238 27114238 C T HIST1H2BK Missense_Mutation p.E114K 0.17 tolerated_low_confidence(0.07) benign(0.029) TCGA-BA-5558-01 6 2948610 2948610 G A SERPINB6 Silent p.A351A 0.18 TCGA-BA-5558-01 6 29591083 29591083 G A GABBR1 Missense_Mutation p.S321L 0.20 deleterious(0) benign(0.254) TCGA-BA-5558-01 6 41738550 41738550 C T FRS3 Missense_Mutation p.R429H 0.07 tolerated(0.18) benign(0.001) TCGA-BA-5558-01 6 47649665 47649665 C G GPR111 Missense_Mutation p.S457C 0.23 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 6 56482963 56482963 C T DST Intron 0.28 TCGA-BA-5558-01 6 85469990 85469990 C G TBX18 Silent p.V194V 0.14 TCGA-BA-5558-01 7 117828389 117828389 C T NAA38 Nonsense_Mutation p.R44* 0.23 TCGA-BA-5558-01 7 134216705 134216705 G C AKR1B10 Missense_Mutation p.E94Q 0.21 tolerated(1) benign(0.003) TCGA-BA-5558-01 7 141765212 141765212 G C MGAM Missense_Mutation p.G1521A 0.24 deleterious(0.04) possibly_damaging(0.827) TCGA-BA-5558-01 7 150028028 150028028 G A ZBED6CL Missense_Mutation p.E179K 0.11 tolerated(0.39) benign(0.006) TCGA-BA-5558-01 7 154679393 154679393 G A DPP6 Silent p.A751A 0.22 TCGA-BA-5558-01 7 24727123 24727123 G A MPP6 Missense_Mutation p.D505N 0.20 deleterious(0) probably_damaging(1) TCGA-BA-5558-01 7 26251377 26251377 G C CBX3 Splice_Site p.X142_splice 0.24 TCGA-BA-5558-01 7 37955829 37955829 G T SFRP4 Missense_Mutation p.A104E 0.27 deleterious(0) probably_damaging(0.999) TCGA-BA-5558-01 7 4169596 4169596 G A SDK1 Silent p.G1332G 0.24 TCGA-BA-5558-01 7 45753466 45753466 G T ADCY1 Missense_Mutation p.G1078W 0.21 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-BA-5558-01 7 550596 550596 G T PDGFA Silent p.V101V 0.07 TCGA-BA-5558-01 7 64649513 64649513 C T INTS4L1 Intron 0.26 TCGA-BA-5558-01 8 105367308 105367308 C T DCSTAMP Silent p.S411S 0.13 TCGA-BA-5558-01 8 113599423 113599423 G A CSMD3 Silent p.L1253L 0.12 TCGA-BA-5558-01 8 122641162 122641162 C T HAS2 Missense_Mutation p.R140K 0.16 tolerated(0.8) benign(0.017) TCGA-BA-5558-01 8 124975615 124975615 C T FER1L6 Silent p.V58V 0.46 TCGA-BA-5558-01 8 145533469 145533469 G A HSF1 Silent p.L125L 0.12 TCGA-BA-5558-01 9 121930223 121930223 G A BRINP1 Silent p.I475I 0.22 TCGA-BA-5558-01 9 124072998 124072998 C T GSN Missense_Mutation p.P181S 0.19 deleterious(0.04) benign(0.004) TCGA-BA-5558-01 9 127265612 127265612 G T NR5A1 Silent p.S21S 0.16 TCGA-BA-5558-01 9 127684082 127684082 C T GOLGA1 Missense_Mutation p.M217I 0.20 tolerated(0.18) benign(0.002) TCGA-BA-5558-01 9 131745261 131745261 G C NUP188 Missense_Mutation p.D584H 0.21 deleterious(0) probably_damaging(0.999) TCGA-BA-5558-01 9 17791298 17791298 A T SH3GL2 Missense_Mutation p.I232F 0.20 deleterious(0.01) possibly_damaging(0.53) TCGA-BA-5558-01 9 21441194 21441194 G C IFNA1 3'UTR 0.38 TCGA-BA-5558-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.45 TCGA-BA-5558-01 9 27286284 27286284 G C EQTN Missense_Mutation p.I186M 0.24 deleterious(0) probably_damaging(0.961) TCGA-BA-5558-01 9 33676496 33676496 C A PTENP1 RNA 0.22 TCGA-BA-5558-01 X 100511136 100511136 C G DRP2 Missense_Mutation p.S759C 0.32 tolerated(0.4) probably_damaging(0.947) TCGA-BA-5558-01 X 69647160 69647160 C G GDPD2 Intron 0.28 TCGA-BA-5558-01 X 69649354 69649354 C T GDPD2 Silent p.F316F 0.43 TCGA-BA-5559-01 10 107012588 107012588 C A SORCS3 Missense_Mutation p.T1054N 0.29 deleterious(0) probably_damaging(0.98) TCGA-BA-5559-01 10 18270411 18270411 G C SLC39A12 Missense_Mutation p.E365D 0.23 deleterious(0) possibly_damaging(0.786) TCGA-BA-5559-01 10 70405419 70405419 C G TET1 Missense_Mutation p.S978C 0.19 tolerated(0.13) benign(0.015) TCGA-BA-5559-01 10 95790919 95790919 C G PLCE1 Nonsense_Mutation p.S39* 0.14 TCGA-BA-5559-01 11 118925377 118925377 G A HYOU1 Silent p.I169I 0.24 TCGA-BA-5559-01 11 1275954 1275954 G A MUC5B Missense_Mutation p.G5170S 0.24 unknown(0) TCGA-BA-5559-01 11 131781289 131781289 G T NTM 5'Flank 0.44 TCGA-BA-5559-01 11 18955550 18955550 G T MRGPRX1 Missense_Mutation p.S261Y 0.24 deleterious(0) possibly_damaging(0.464) TCGA-BA-5559-01 11 3061081 3061081 G A CARS Missense_Mutation p.T179M 0.09 deleterious(0) probably_damaging(1) TCGA-BA-5559-01 11 35454125 35454125 A G PAMR1 Missense_Mutation p.F665L 0.26 tolerated(0.74) probably_damaging(0.995) TCGA-BA-5559-01 11 46911062 46911062 G T LRP4 Missense_Mutation p.N705K 0.05 deleterious(0.03) benign(0.097) TCGA-BA-5559-01 11 4843392 4843392 C A OR51F2 Silent p.I259I 0.21 TCGA-BA-5559-01 11 55065040 55065040 T A TRIM51HP RNA 0.42 TCGA-BA-5559-01 11 65638052 65638052 A T EFEMP2 Missense_Mutation p.C149S 0.33 deleterious(0.01) probably_damaging(1) TCGA-BA-5559-01 12 10233841 10233841 G A CLEC1A Missense_Mutation p.A129V 0.05 deleterious(0.01) benign(0.028) TCGA-BA-5559-01 12 109182226 109182226 C A SSH1 Missense_Mutation p.K896N 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.701) TCGA-BA-5559-01 12 11421068 11421068 G A PRB3 Nonsense_Mutation p.R39* 0.10 TCGA-BA-5559-01 12 130927171 130927171 G A RIMBP2 Silent p.P225P 0.42 TCGA-BA-5559-01 12 6729533 6729533 C T LPAR5 Silent p.P294P 0.36 TCGA-BA-5559-01 12 68619560 68619560 T G IL26 5'UTR 0.12 TCGA-BA-5559-01 12 97331091 97331091 C T NEDD1 Missense_Mutation p.A353V 0.47 tolerated(0.11) benign(0.004) TCGA-BA-5559-01 13 51957877 51957877 G A INTS6 Missense_Mutation p.P299S 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-BA-5559-01 13 52548430 52548430 A G ATP7B Missense_Mutation p.V309A 0.16 tolerated(0.54) benign(0.002) TCGA-BA-5559-01 14 20711912 20711912 G A OR11H4 Missense_Mutation p.R321H 0.32 tolerated(0.14) benign(0.001) TCGA-BA-5559-01 14 67864498 67864498 G A PLEK2 Nonsense_Mutation p.Q30* 0.26 TCGA-BA-5559-01 15 77407481 77407481 C G PEAK1 Missense_Mutation p.E1420Q 0.04 tolerated(0.19) benign(0.134) TCGA-BA-5559-01 15 99762036 99762036 C T TTC23 Missense_Mutation p.V72I 0.22 tolerated(0.16) benign(0.027) TCGA-BA-5559-01 16 20565101 20565101 A C ACSM2B Silent p.A246A 0.19 TCGA-BA-5559-01 16 23541092 23541092 G A EARS2 Silent p.Y398Y 0.12 TCGA-BA-5559-01 16 50811826 50811826 C A CYLD Nonsense_Mutation p.S371* 0.05 TCGA-BA-5559-01 16 57689388 57689388 G A GPR56 Silent p.G282G 0.15 TCGA-BA-5559-01 16 65032522 65032522 G T CDH11 Missense_Mutation p.P156T 0.08 deleterious(0.02) benign(0.423) TCGA-BA-5559-01 17 39593678 39593678 C T KRT38 Missense_Mutation p.G453R 0.39 tolerated_low_confidence(0.05) unknown(0) TCGA-BA-5559-01 17 59876570 59876570 T C BRIP1 Missense_Mutation p.T411A 0.21 deleterious(0.01) possibly_damaging(0.885) TCGA-BA-5559-01 17 8812440 8812440 G A PIK3R5 Missense_Mutation p.P52L 0.09 deleterious(0) probably_damaging(0.917) TCGA-BA-5559-01 18 13885277 13885277 T A MC2R Missense_Mutation p.N81Y 0.72 deleterious(0) probably_damaging(0.961) TCGA-BA-5559-01 18 43204734 43204734 G A SLC14A2 Silent p.P35P 0.35 TCGA-BA-5559-01 18 61602476 61602476 A T SERPINB10 Nonstop_Mutation p.*398Yext*19 0.16 TCGA-BA-5559-01 18 7080343 7080343 G A LAMA1 Missense_Mutation p.R59W 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-BA-5559-01 18 72343784 72343784 G A ZNF407 Missense_Mutation p.R270H 0.05 deleterious(0) probably_damaging(0.999) TCGA-BA-5559-01 19 22156525 22156525 G A ZNF208 Silent p.S437S 0.07 TCGA-BA-5559-01 19 40971542 40971542 G A BLVRB Silent p.T18T 0.25 TCGA-BA-5559-01 19 43969794 43969794 C T LYPD3 5'UTR 0.30 TCGA-BA-5559-01 19 52857030 52857030 G A ZNF610 Missense_Mutation p.M53I 0.10 deleterious(0.02) benign(0.426) TCGA-BA-5559-01 19 57132929 57132929 C T ZNF71 Missense_Mutation p.R92W 0.05 deleterious(0.01) benign(0.001) TCGA-BA-5559-01 19 57175917 57175917 G A ZNF835 Missense_Mutation p.T217M 0.26 deleterious(0) probably_damaging(0.997) TCGA-BA-5559-01 1 110051444 110051444 C T AMIGO1 Missense_Mutation p.V31M 0.26 tolerated(0.26) benign(0.003) TCGA-BA-5559-01 1 156950259 156950259 G A ARHGEF11 Silent p.A81A 0.28 TCGA-BA-5559-01 1 160104995 160104995 C T ATP1A2 Silent p.L675L 0.34 TCGA-BA-5559-01 1 201046135 201046135 G C CACNA1S Silent p.L580L 0.10 TCGA-BA-5559-01 1 203150383 203150383 G A CHI3L1 Silent p.Y206Y 0.29 TCGA-BA-5559-01 1 240656560 240656560 C G GREM2 Missense_Mutation p.W72C 0.25 deleterious(0) probably_damaging(1) TCGA-BA-5559-01 1 240966240 240966240 G A RGS7 Silent p.S441S 0.09 TCGA-BA-5559-01 1 26190341 26190341 C T PAQR7 5'UTR 0.22 TCGA-BA-5559-01 1 43825460 43825460 G C CDC20 Missense_Mutation p.R132P 0.38 tolerated(0.2) benign(0.346) TCGA-BA-5559-01 1 43881682 43881682 G A SZT2 Missense_Mutation p.V228I 0.23 tolerated(0.57) benign(0.257) TCGA-BA-5559-01 1 44044587 44044587 G A PTPRF Silent p.V225V 0.07 TCGA-BA-5559-01 1 99771805 99771805 G A LPPR4 Missense_Mutation p.G511R 0.04 tolerated(0.13) benign(0.087) TCGA-BA-5559-01 20 33033193 33033193 A G ITCH Missense_Mutation p.Y397C 0.38 deleterious(0) possibly_damaging(0.664) TCGA-BA-5559-01 20 39831282 39831285 GTTT - ZHX3 Frame_Shift_Del p.K758Wfs*9 0.26 TCGA-BA-5559-01 21 47545457 47545457 C A COL6A2 Missense_Mutation p.T632K 0.06 tolerated(0.06) possibly_damaging(0.791) TCGA-BA-5559-01 22 37524391 37524391 C A IL2RB Missense_Mutation p.W467C 0.09 tolerated(0.19) benign(0.052) TCGA-BA-5559-01 22 41553402 41553402 G A EP300 Missense_Mutation p.C1164Y 0.61 probably_damaging(1) TCGA-BA-5559-01 2 136499490 136499490 G A UBXN4 5'UTR 0.22 TCGA-BA-5559-01 2 141806556 141806556 A G LRP1B Silent p.D596D 0.23 TCGA-BA-5559-01 2 149226535 149226535 A G MBD5 Silent p.P341P 0.18 TCGA-BA-5559-01 2 161029176 161029176 A G ITGB6 Silent p.H275H 0.04 TCGA-BA-5559-01 2 238269816 238269816 C A COL6A3 Missense_Mutation p.G2053V 0.05 probably_damaging(0.979) TCGA-BA-5559-01 2 38972238 38972238 C A SRSF7 3'UTR 0.37 TCGA-BA-5559-01 3 126070938 126070938 G C KLF15 Silent p.S276S 0.17 TCGA-BA-5559-01 3 132186135 132186135 G T DNAJC13 Missense_Mutation p.R729M 0.07 deleterious(0) possibly_damaging(0.642) TCGA-BA-5559-01 3 180688116 180688116 G A FXR1 Missense_Mutation p.D525N 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BA-5559-01 4 26491091 26491091 A G CCKAR Missense_Mutation p.V43A 0.10 tolerated(0.11) benign(0.43) TCGA-BA-5559-01 4 4281210 4281210 G C LYAR Missense_Mutation p.D131E 0.38 tolerated(0.92) benign(0.001) TCGA-BA-5559-01 5 115177494 115177494 C G ATG12 5'UTR 0.25 TCGA-BA-5559-01 5 140960400 140960400 G C DIAPH1 Silent p.V245V 0.06 TCGA-BA-5559-01 5 141336689 141336689 G A PCDH12 Missense_Mutation p.A243V 0.20 tolerated(1) benign(0) TCGA-BA-5559-01 5 159476610 159476610 G A TTC1 Missense_Mutation p.D211N 0.08 deleterious(0) probably_damaging(0.998) TCGA-BA-5559-01 5 160042962 160042962 C T ATP10B Missense_Mutation p.E846K 0.25 tolerated(0.38) possibly_damaging(0.779) TCGA-BA-5559-01 5 175717758 175717759 CT - SIMC1 Intron 0.11 TCGA-BA-5559-01 5 50091099 50091099 C T PARP8 Missense_Mutation p.H426Y 0.12 tolerated_low_confidence(0.2) benign(0.05) TCGA-BA-5559-01 5 74091962 74091962 C T FAM169A Missense_Mutation p.E385K 0.06 tolerated(0.1) possibly_damaging(0.849) TCGA-BA-5559-01 6 152451872 152451872 G A SYNE1 Silent p.V8712V 0.18 TCGA-BA-5559-01 6 152728244 152728244 C G SYNE1 Missense_Mutation p.E2210Q 0.06 benign(0.267) TCGA-BA-5559-01 6 43400422 43400422 G A ABCC10 Missense_Mutation p.R235H 0.14 tolerated(0.06) probably_damaging(0.912) TCGA-BA-5559-01 6 73023290 73023290 G A RIMS1 Missense_Mutation p.A1349T 0.22 deleterious(0) probably_damaging(0.996) TCGA-BA-5559-01 7 117007450 117007450 C A ASZ1 Missense_Mutation p.D411Y 0.09 deleterious(0) probably_damaging(0.928) TCGA-BA-5559-01 8 12040220 12040220 G A FAM86B1 3'UTR 0.16 TCGA-BA-5559-01 8 131127917 131127917 C T ASAP1 Missense_Mutation p.R710Q 0.07 tolerated(0.41) probably_damaging(0.968) TCGA-BA-5559-01 9 123007320 123007320 C A MIR147A RNA 0.11 TCGA-BA-5559-01 9 125486377 125486377 C A OR1L4 Missense_Mutation p.L37I 0.05 deleterious(0.03) benign(0.021) TCGA-BA-5559-01 9 32635464 32635464 C T TAF1L Silent p.A38A 0.04 TCGA-BA-5559-01 9 90343233 90343233 C T CTSL Silent p.F106F 0.11 TCGA-BA-5559-01 X 130678201 130678201 G A OR13H1 Missense_Mutation p.D52N 0.25 deleterious(0.04) possibly_damaging(0.566) TCGA-BA-5559-01 X 155232635 155232635 C A IL9R Nonsense_Mutation p.C31* 0.27 TCGA-BA-6868-01 10 115312861 115312861 C G HABP2 5'UTR 0.45 TCGA-BA-6868-01 10 52390636 52390636 C G RP11-50E11.3 RNA 0.23 TCGA-BA-6868-01 10 55568819 55568819 C G PCDH15 Missense_Mutation p.R598T 0.31 deleterious_low_confidence(0) unknown(0) TCGA-BA-6868-01 10 74885078 74885078 T A NUDT13 Intron 0.26 TCGA-BA-6868-01 10 75187819 75187819 C A MSS51 Intron 0.29 TCGA-BA-6868-01 10 98714920 98714920 G C LCOR Missense_Mutation p.Q181H 0.41 tolerated(0.59) benign(0.004) TCGA-BA-6868-01 11 117387378 117387378 G A DSCAML1 Silent p.I589I 0.23 TCGA-BA-6868-01 11 121000847 121000847 T G TECTA Silent p.S956S 0.31 TCGA-BA-6868-01 11 18369136 18369136 G T GTF2H1 Missense_Mutation p.G280V 0.30 deleterious(0) possibly_damaging(0.776) TCGA-BA-6868-01 11 46900527 46900527 G C LRP4 Missense_Mutation p.P1023A 0.47 deleterious(0.04) benign(0.283) TCGA-BA-6868-01 11 4945555 4945555 A C OR51G1 Silent p.L5L 0.69 TCGA-BA-6868-01 11 55681486 55681486 A T OR5W2 Missense_Mutation p.D191E 0.13 deleterious(0.02) possibly_damaging(0.517) TCGA-BA-6868-01 11 57310543 57310543 A T SMTNL1 Missense_Mutation p.E161V 0.17 deleterious(0) benign(0.307) TCGA-BA-6868-01 11 63594564 63594564 T G C11orf84 Missense_Mutation p.S367A 0.19 deleterious_low_confidence(0.01) benign(0.164) TCGA-BA-6868-01 11 6453230 6453230 G C HPX Missense_Mutation p.L285V 0.67 tolerated(0.1) possibly_damaging(0.7) TCGA-BA-6868-01 11 65425831 65425831 G A RELA Silent p.V268V 0.36 TCGA-BA-6868-01 11 65792826 65792826 G T CATSPER1 Missense_Mutation p.A342D 0.41 tolerated(0.37) benign(0.15) TCGA-BA-6868-01 11 70333469 70333469 A C SHANK2 Missense_Mutation p.F978V 0.06 tolerated(0.4) benign(0.055) TCGA-BA-6868-01 11 72415374 72415374 G C ARAP1 Missense_Mutation p.F605L 0.17 deleterious(0.05) probably_damaging(0.983) TCGA-BA-6868-01 11 76507546 76507546 G A TSKU Missense_Mutation p.E296K 0.18 tolerated(0.86) possibly_damaging(0.45) TCGA-BA-6868-01 11 82878338 82878338 A G PCF11 Silent p.E663E 0.24 TCGA-BA-6868-01 11 93472441 93472441 G C TAF1D Missense_Mutation p.D10E 0.17 deleterious(0.03) benign(0.291) TCGA-BA-6868-01 11 99715973 99715973 G C CNTN5 Missense_Mutation p.E186Q 0.09 deleterious(0.02) possibly_damaging(0.505) TCGA-BA-6868-01 12 105556620 105556620 A G KIAA1033 Missense_Mutation p.M1052V 0.20 deleterious(0.03) possibly_damaging(0.672) TCGA-BA-6868-01 12 111886081 111886081 T C SH2B3 Missense_Mutation p.I568T 0.35 deleterious(0) benign(0.432) TCGA-BA-6868-01 12 118650751 118650751 G A TAOK3 Nonsense_Mutation p.Q263* 0.58 TCGA-BA-6868-01 12 124821412 124821412 G C NCOR2 Missense_Mutation p.P2001R 0.53 possibly_damaging(0.773) TCGA-BA-6868-01 12 23716248 23716248 C G SOX5 Missense_Mutation p.D478H 0.44 tolerated(0.33) probably_damaging(0.994) TCGA-BA-6868-01 12 44537363 44537363 A G TMEM117 Missense_Mutation p.N149S 0.35 deleterious(0.04) probably_damaging(0.971) TCGA-BA-6868-01 12 69986801 69986801 G C CCT2 Missense_Mutation p.E266Q 0.29 tolerated(0.13) benign(0.128) TCGA-BA-6868-01 12 72667201 72667201 C A TRHDE Missense_Mutation p.Q215K 0.45 deleterious(0) benign(0.029) TCGA-BA-6868-01 12 85266514 85266514 G A SLC6A15 Missense_Mutation p.P390L 0.07 deleterious(0.02) probably_damaging(1) TCGA-BA-6868-01 13 39621219 39621219 G A NHLRC3 Missense_Mutation p.D241N 0.68 tolerated(0.17) benign(0.011) TCGA-BA-6868-01 13 41657072 41657072 A T WBP4 3'UTR 0.70 TCGA-BA-6868-01 13 42293870 42293870 C T VWA8 Silent p.P991P 0.64 TCGA-BA-6868-01 14 105415528 105415528 T C AHNAK2 Missense_Mutation p.K2087R 0.38 probably_damaging(0.981) TCGA-BA-6868-01 14 106494249 106494249 G T IGHV2-5 Missense_Mutation p.S81R 0.32 deleterious(0.01) possibly_damaging(0.763) TCGA-BA-6868-01 14 23547373 23547373 T C ACIN1 Missense_Mutation p.I762V 0.39 benign(0.002) TCGA-BA-6868-01 14 26949229 26949229 C A NOVA1 Missense_Mutation p.S134I 0.35 tolerated(0.1) unknown(0) TCGA-BA-6868-01 14 47311091 47311091 G T MDGA2 3'UTR 0.27 TCGA-BA-6868-01 14 64494410 64494410 C T SYNE2 Nonsense_Mutation p.Q2205* 0.41 TCGA-BA-6868-01 14 79117553 79117553 C G NRXN3 5'UTR 0.38 TCGA-BA-6868-01 14 90651079 90651079 G A KCNK13 Missense_Mutation p.R320Q 0.33 tolerated(0.49) benign(0.002) TCGA-BA-6868-01 15 31294736 31294736 T C TRPM1 Silent p.R1406R 0.50 TCGA-BA-6868-01 15 65347288 65347288 G T RASL12 Missense_Mutation p.S250R 0.52 deleterious(0) probably_damaging(0.983) TCGA-BA-6868-01 15 74919886 74919888 GAG - CLK3 In_Frame_Del p.E456del 0.57 TCGA-BA-6868-01 15 78390796 78390796 C T SH2D7 Missense_Mutation p.P168L 0.36 tolerated(0.12) benign(0.001) TCGA-BA-6868-01 15 89173493 89173493 G T AEN Nonsense_Mutation p.G316* 0.47 TCGA-BA-6868-01 16 19871853 19871853 G A GPRC5B Missense_Mutation p.P394L 0.37 deleterious(0) benign(0.408) TCGA-BA-6868-01 16 24800634 24800634 A T TNRC6A Missense_Mutation p.N224I 0.42 deleterious(0) benign(0.092) TCGA-BA-6868-01 16 29906732 29906732 C T SEZ6L2 Missense_Mutation p.G234D 0.39 tolerated(0.23) benign(0.139) TCGA-BA-6868-01 16 29979372 29979372 A T TMEM219 Missense_Mutation p.I128F 0.39 deleterious(0) possibly_damaging(0.561) TCGA-BA-6868-01 16 4165167 4165167 G A ADCY9 Missense_Mutation p.P93S 0.21 deleterious(0) possibly_damaging(0.899) TCGA-BA-6868-01 16 4308235 4308235 C T TFAP4 Missense_Mutation p.E280K 0.38 deleterious(0) unknown(0) TCGA-BA-6868-01 16 48138167 48138167 T G ABCC12 Missense_Mutation p.N929T 0.04 tolerated(0.42) benign(0.038) TCGA-BA-6868-01 16 72143370 72143370 C T DHX38 Silent p.P1146P 0.24 TCGA-BA-6868-01 16 74455117 74455117 G A CLEC18B Silent p.L18L 0.20 TCGA-BA-6868-01 16 88780121 88780121 G A CTU2 Missense_Mutation p.E314K 0.29 deleterious(0) probably_damaging(0.996) TCGA-BA-6868-01 17 26696658 26696658 C G VTN Missense_Mutation p.E133D 0.43 tolerated(0.45) benign(0.004) TCGA-BA-6868-01 17 26962035 26962035 G T KIAA0100 Missense_Mutation p.A857D 0.44 tolerated(0.35) benign(0.021) TCGA-BA-6868-01 17 27400997 27400997 T C TIAF1 Missense_Mutation p.N74S 0.25 tolerated_low_confidence(0.25) possibly_damaging(0.486) TCGA-BA-6868-01 17 33348470 33348470 G T RFFL Missense_Mutation p.P171T 0.41 tolerated(0.58) benign(0.066) TCGA-BA-6868-01 17 43226879 43226879 G C HEXIM1 Missense_Mutation p.E108Q 0.50 tolerated_low_confidence(0.25) benign(0.043) TCGA-BA-6868-01 17 58678140 58678140 G T PPM1D Missense_Mutation p.G122V 0.16 tolerated(0.12) possibly_damaging(0.661) TCGA-BA-6868-01 17 65905793 65905793 G A BPTF Missense_Mutation p.D970N 0.22 benign(0.133) TCGA-BA-6868-01 17 7578268 7578268 A G TP53 Missense_Mutation p.L194P 0.68 deleterious(0) probably_damaging(1) TCGA-BA-6868-01 17 80156247 80156247 T C CCDC57 Silent p.K153K 0.08 TCGA-BA-6868-01 18 34298136 34298136 G C FHOD3 Missense_Mutation p.E784Q 0.14 deleterious(0.03) benign(0.136) TCGA-BA-6868-01 18 39629561 39629561 C G PIK3C3 Missense_Mutation p.T752R 0.64 tolerated(0.08) possibly_damaging(0.852) TCGA-BA-6868-01 19 10434234 10434234 G A RAVER1 Silent p.C272C 0.18 TCGA-BA-6868-01 19 17948809 17948809 C G JAK3 Missense_Mutation p.D545H 0.41 deleterious(0) probably_damaging(0.941) TCGA-BA-6868-01 19 22942464 22942464 G C ZNF99 Missense_Mutation p.Q83E 0.45 tolerated(0.25) benign(0.121) TCGA-BA-6868-01 19 23544197 23544197 T C ZNF91 Silent p.R528R 0.31 TCGA-BA-6868-01 19 23544264 23544264 G T ZNF91 Missense_Mutation p.T506N 0.21 tolerated(0.29) probably_damaging(0.963) TCGA-BA-6868-01 19 23544273 23544273 G A ZNF91 Missense_Mutation p.S503L 0.26 deleterious(0.02) possibly_damaging(0.776) TCGA-BA-6868-01 19 40195162 40195162 G C LGALS14 5'UTR 0.11 TCGA-BA-6868-01 19 41630665 41630665 C T CYP2F1 Missense_Mutation p.R336W 0.59 deleterious(0.02) benign(0.109) TCGA-BA-6868-01 19 44516570 44516570 G A ZNF230 3'UTR 0.18 TCGA-BA-6868-01 19 49216571 49216571 C G MAMSTR Missense_Mutation p.D401H 0.42 deleterious(0) unknown(0) TCGA-BA-6868-01 19 5867283 5867283 A G FUT5 Missense_Mutation p.S152P 0.18 tolerated(0.16) benign(0.006) TCGA-BA-6868-01 19 58988810 58988810 G C ZNF446 Silent p.L75L 0.36 TCGA-BA-6868-01 1 103474059 103474059 G T COL11A1 Nonsense_Mutation p.S548* 0.28 TCGA-BA-6868-01 1 10364177 10364177 C T KIF1B Intron 0.44 TCGA-BA-6868-01 1 116927412 116927412 A G ATP1A1 Missense_Mutation p.H44R 0.35 deleterious(0) probably_damaging(0.997) TCGA-BA-6868-01 1 14108768 14108768 C T PRDM2 Missense_Mutation p.S1493L 0.25 unknown(0) TCGA-BA-6868-01 1 170508524 170508524 C A GORAB Missense_Mutation p.P104T 0.26 tolerated(0.31) benign(0.076) TCGA-BA-6868-01 1 180959168 180959168 G C STX6 Silent p.L147L 0.42 TCGA-BA-6868-01 1 205306715 205306715 G A KLHDC8A Nonsense_Mutation p.Q289* 0.47 TCGA-BA-6868-01 1 225142660 225142660 G C DNAH14 Splice_Site p.X26_splice 0.30 TCGA-BA-6868-01 1 229440922 229440922 A G SPHAR Missense_Mutation p.Y14C 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-BA-6868-01 1 236647552 236647552 A T EDARADD 3'Flank 0.42 TCGA-BA-6868-01 1 247769130 247769130 C G OR2G3 Silent p.T81T 0.38 TCGA-BA-6868-01 1 248684984 248684984 C G OR2G6 Missense_Mutation p.L13V 0.36 tolerated(0.17) benign(0.002) TCGA-BA-6868-01 1 249107242 249107242 G A SH3BP5L Silent p.I219I 0.39 TCGA-BA-6868-01 1 35452758 35452759 - A ZMYM6 Frame_Shift_Ins p.A1309Cfs*37 0.27 TCGA-BA-6868-01 1 63027299 63027299 T C DOCK7 Missense_Mutation p.I730V 0.37 tolerated(1) benign(0.001) TCGA-BA-6868-01 1 68962729 68962729 C G DEPDC1 5'UTR 0.45 TCGA-BA-6868-01 1 71530741 71530741 T C ZRANB2 3'UTR 0.30 TCGA-BA-6868-01 20 32879320 32879320 C T AHCY Missense_Mutation p.E155K 0.25 deleterious_low_confidence(0.02) probably_damaging(0.951) TCGA-BA-6868-01 20 3782640 3782640 C G CDC25B Missense_Mutation p.P331A 0.20 tolerated(0.11) probably_damaging(1) TCGA-BA-6868-01 20 44571864 44571864 A G PCIF1 Missense_Mutation p.M268V 0.15 deleterious(0.01) benign(0.374) TCGA-BA-6868-01 20 9496163 9496180 CTGAAAAAGATATATTTG - LAMP5 In_Frame_Del p.P43_V49delinsL 0.30 TCGA-BA-6868-01 21 10933918 10933918 C A TPTE Nonsense_Mutation p.E321* 0.14 TCGA-BA-6868-01 21 47817314 47817314 G A PCNT Missense_Mutation p.R1451H 0.57 benign(0.05) TCGA-BA-6868-01 22 18979561 18979561 G C DGCR5 RNA 0.14 TCGA-BA-6868-01 22 22843615 22843615 G T ZNF280B Missense_Mutation p.H37N 0.31 deleterious(0.04) benign(0.077) TCGA-BA-6868-01 22 24224830 24224830 C T SLC2A11 Silent p.D297D 0.20 TCGA-BA-6868-01 22 26159338 26159338 C T MYO18B Silent p.V60V 0.48 TCGA-BA-6868-01 22 26423316 26423316 G C MYO18B Missense_Mutation p.G2459A 0.39 tolerated(0.51) benign(0.234) TCGA-BA-6868-01 22 50926457 50926457 G A MIOX Missense_Mutation p.R107Q 0.23 deleterious(0) probably_damaging(1) TCGA-BA-6868-01 2 100017676 100017676 C T REV1 3'UTR 0.31 TCGA-BA-6868-01 2 105696507 105696507 A T MRPS9 Missense_Mutation p.Y159F 0.40 tolerated(0.15) probably_damaging(0.999) TCGA-BA-6868-01 2 141122323 141122323 G - LRP1B Frame_Shift_Del p.L3680Ffs*76 0.24 TCGA-BA-6868-01 2 141128783 141128783 T A LRP1B Missense_Mutation p.N3614Y 0.42 possibly_damaging(0.904) TCGA-BA-6868-01 2 160053172 160053172 G T TANC1 Silent p.R1011R 0.33 TCGA-BA-6868-01 2 160139519 160139519 G C WDSUB1 Missense_Mutation p.S21C 0.47 deleterious(0) probably_damaging(1) TCGA-BA-6868-01 2 170129520 170129520 T C LRP2 Missense_Mutation p.H678R 0.35 probably_damaging(0.999) TCGA-BA-6868-01 2 170428349 170428349 G C FASTKD1 Nonsense_Mutation p.S64* 0.40 TCGA-BA-6868-01 2 171573982 171573982 C T SP5 3'UTR 0.33 TCGA-BA-6868-01 2 227924929 227924929 G T COL4A4 Missense_Mutation p.A696D 0.28 probably_damaging(0.975) TCGA-BA-6868-01 2 228886630 228886630 G A SPHKAP Missense_Mutation p.P165L 0.36 tolerated(0.09) benign(0.094) TCGA-BA-6868-01 2 233075076 233075076 G T DIS3L2 Missense_Mutation p.D389Y 0.17 deleterious(0) probably_damaging(1) TCGA-BA-6868-01 2 32927945 32927945 A G TTC27 Silent p.K397K 0.33 TCGA-BA-6868-01 2 37455847 37455847 T C CEBPZ Silent p.K163K 0.41 TCGA-BA-6868-01 2 44079515 44079515 T C ABCG8 Missense_Mutation p.L195P 0.43 deleterious(0) probably_damaging(1) TCGA-BA-6868-01 2 98165918 98165918 C G ANKRD36B RNA 0.09 TCGA-BA-6868-01 3 121202255 121202255 T A POLQ Missense_Mutation p.E1983V 0.48 deleterious(0.01) probably_damaging(0.913) TCGA-BA-6868-01 3 130452572 130452572 G A PIK3R4 Missense_Mutation p.H424Y 0.49 tolerated(0.32) benign(0.017) TCGA-BA-6868-01 3 135863925 135863925 G C PPP2R3A Missense_Mutation p.E1124Q 0.06 deleterious(0) probably_damaging(0.986) TCGA-BA-6868-01 3 142048418 142048418 T C XRN1 Missense_Mutation p.H1420R 0.47 tolerated_low_confidence(0.24) benign(0.001) TCGA-BA-6868-01 3 49064207 49064207 C T IMPDH2 Silent p.L244L 0.74 TCGA-BA-6868-01 3 97202882 97202882 A T EPHA6 Missense_Mutation p.I727F 0.50 deleterious(0) probably_damaging(0.998) TCGA-BA-6868-01 3 9798304 9798304 G A OGG1 Silent p.L299L 0.78 TCGA-BA-6868-01 4 110624509 110624509 T A CASP6 Intron 0.26 TCGA-BA-6868-01 4 140811147 140811147 G A MAML3 Silent p.L481L 0.34 TCGA-BA-6868-01 4 143094803 143094803 T G INPP4B Missense_Mutation p.L447F 0.31 deleterious(0) probably_damaging(1) TCGA-BA-6868-01 4 153247297 153247297 G A FBXW7 Missense_Mutation p.A502V 0.44 tolerated(0.11) probably_damaging(0.987) TCGA-BA-6868-01 4 184931650 184931650 G T STOX2 Missense_Mutation p.E553D 0.52 tolerated_low_confidence(0.45) benign(0.004) TCGA-BA-6868-01 4 187004613 187004613 C T TLR3 Silent p.I591I 0.39 TCGA-BA-6868-01 4 187006008 187006008 C G TLR3 Missense_Mutation p.S899C 0.49 deleterious(0.02) benign(0.062) TCGA-BA-6868-01 4 188924382 188924382 C G ZFP42 Missense_Mutation p.L141V 0.37 tolerated(0.3) benign(0.214) TCGA-BA-6868-01 4 52943055 52943055 G T SPATA18 Missense_Mutation p.R290L 0.36 deleterious(0.05) benign(0.044) TCGA-BA-6868-01 4 81123531 81123531 C T PRDM8 Silent p.I305I 0.44 TCGA-BA-6868-01 4 81188009 81188009 T C FGF5 Missense_Mutation p.F11L 0.42 tolerated_low_confidence(0.43) unknown(0) TCGA-BA-6868-01 4 83350560 83350560 A G HNRNPDL Missense_Mutation p.I95T 0.29 deleterious_low_confidence(0) benign(0.152) TCGA-BA-6868-01 4 87809368 87809368 G C C4orf36 Missense_Mutation p.I42M 0.47 deleterious(0.05) benign(0.041) TCGA-BA-6868-01 5 140574507 140574507 C T PCDHB10 Silent p.S794S 0.32 TCGA-BA-6868-01 5 140580775 140580775 A C PCDHB11 Silent p.T476T 0.16 TCGA-BA-6868-01 5 140719966 140719966 C A PCDHGA2 Silent p.A476A 0.22 TCGA-BA-6868-01 5 141059694 141059694 G A ARAP3 Silent p.L120L 0.72 TCGA-BA-6868-01 5 33984637 33984637 C G SLC45A2 Missense_Mutation p.D18H 0.21 deleterious(0.01) benign(0.289) TCGA-BA-6868-01 5 74865317 74865317 G T POLK Silent p.L136L 0.58 TCGA-BA-6868-01 5 79033128 79033128 C G CMYA5 Missense_Mutation p.T2847R 0.64 benign(0.26) TCGA-BA-6868-01 5 837492 837492 T C ZDHHC11 Silent p.K296K 0.03 TCGA-BA-6868-01 5 98129212 98129212 C G RGMB Missense_Mutation p.Q398E 0.45 tolerated(0.05) benign(0.062) TCGA-BA-6868-01 6 116953560 116953560 G A RSPH4A Missense_Mutation p.E703K 0.33 tolerated_low_confidence(0.19) unknown(0) TCGA-BA-6868-01 6 136597187 136597187 T C BCLAF1 Silent p.K492K 0.13 TCGA-BA-6868-01 6 151162005 151162006 GT - PLEKHG1 Frame_Shift_Del p.C1378Sfs*16 0.12 TCGA-BA-6868-01 6 157522507 157522507 C T ARID1B Silent p.T1593T 0.25 TCGA-BA-6868-01 6 26091716 26091716 A G HFE Missense_Mutation p.H172R 0.27 tolerated(0.19) probably_damaging(0.914) TCGA-BA-6868-01 6 33264552 33264552 A C RGL2 Missense_Mutation p.V81G 0.38 tolerated(0.17) benign(0.001) TCGA-BA-6868-01 6 42179587 42179587 C G MRPS10 Missense_Mutation p.K85N 0.24 deleterious(0.03) probably_damaging(0.948) TCGA-BA-6868-01 6 46658086 46658086 A G TDRD6 Missense_Mutation p.K741E 0.45 tolerated(0.38) benign(0.266) TCGA-BA-6868-01 6 50791426 50791426 C A TFAP2B Missense_Mutation p.P130T 0.54 tolerated(0.27) benign(0.057) TCGA-BA-6868-01 6 76388679 76388679 T G SENP6 Intron 0.33 TCGA-BA-6868-01 6 90409446 90409446 T A MDN1 Missense_Mutation p.R2957S 0.44 benign(0.118) TCGA-BA-6868-01 7 100348484 100348484 G A ZAN Missense_Mutation p.V496I 0.17 possibly_damaging(0.596) TCGA-BA-6868-01 7 141955074 141955074 C A PRSS58 Silent p.L79L 0.69 TCGA-BA-6868-01 7 143556192 143556192 C T FAM115A Missense_Mutation p.E744K 0.26 tolerated(0.07) possibly_damaging(0.888) TCGA-BA-6868-01 7 151921619 151921619 C A KMT2C Missense_Mutation p.G1020V 0.47 probably_damaging(1) TCGA-BA-6868-01 7 40027286 40027286 C T CDK13 Missense_Mutation p.R434C 0.43 deleterious(0) unknown(0) TCGA-BA-6868-01 7 72667567 72667567 C T GTF2IRD2P1 RNA 0.29 TCGA-BA-6868-01 8 110416786 110416786 C G PKHD1L1 Nonsense_Mutation p.Y459* 0.37 TCGA-BA-6868-01 8 120596204 120596204 G A ENPP2 Nonsense_Mutation p.Q537* 0.25 TCGA-BA-6868-01 8 139160898 139160898 C G FAM135B Missense_Mutation p.E1105Q 0.14 tolerated(0.58) benign(0.067) TCGA-BA-6868-01 8 144658617 144658617 C T NAPRT1 Missense_Mutation p.R336Q 0.29 tolerated(0.4) benign(0.199) TCGA-BA-6868-01 8 145698668 145698668 G T KIFC2 Silent p.P784P 0.29 TCGA-BA-6868-01 8 48697813 48697813 G A PRKDC Silent p.L3655L 0.26 TCGA-BA-6868-01 8 73480238 73480238 A G KCNB2 Missense_Mutation p.D90G 0.27 deleterious(0) probably_damaging(1) TCGA-BA-6868-01 8 75233253 75233253 G C JPH1 Missense_Mutation p.F90L 0.16 tolerated(0.11) benign(0.11) TCGA-BA-6868-01 8 77764911 77764911 T C ZFHX4 Silent p.F1918F 0.21 TCGA-BA-6868-01 8 87414410 87414410 A G WWP1 Silent p.A234A 0.38 TCGA-BA-6868-01 8 92983007 92983007 C T RUNX1T1 Missense_Mutation p.R484Q 0.47 tolerated(0.51) benign(0.372) TCGA-BA-6868-01 9 126414381 126414381 C G DENND1A Missense_Mutation p.V177L 0.25 deleterious(0) probably_damaging(0.996) TCGA-BA-6868-01 9 135546192 135546192 G A GTF3C4 Silent p.P69P 0.50 TCGA-BA-6868-01 9 139412684 139412684 C T NOTCH1 Missense_Mutation p.C387Y 0.90 deleterious(0) probably_damaging(0.999) TCGA-BA-6868-01 9 140446808 140446808 T G MRPL41 Missense_Mutation p.F92C 0.33 deleterious(0) probably_damaging(1) TCGA-BA-6868-01 9 37740798 37740798 C A FRMPD1 Missense_Mutation p.P758Q 0.09 deleterious(0.03) possibly_damaging(0.868) TCGA-BA-6868-01 9 5774097 5774097 G A KIAA1432 Missense_Mutation p.E1375K 0.50 tolerated(0.09) possibly_damaging(0.87) TCGA-BA-6868-01 9 97369187 97369187 C T FBP1 Silent p.K205K 0.73 TCGA-BA-6868-01 X 107977584 107977584 G A IRS4 Missense_Mutation p.T664M 0.73 deleterious_low_confidence(0) unknown(0) TCGA-BA-6868-01 X 12701691 12701691 C T FRMPD4 Silent p.I186I 0.68 TCGA-BA-6868-01 X 19022962 19022962 C A GPR64 Missense_Mutation p.M625I 0.72 tolerated(0.14) benign(0.005) TCGA-BA-6868-01 X 3241328 3241328 C T MXRA5 Missense_Mutation p.E800K 0.67 tolerated(0.44) benign(0.388) TCGA-BA-6868-01 X 75003223 75003223 A G MAGEE2 3'UTR 0.60 TCGA-BA-6868-01 X 78216656 78216656 C T P2RY10 Silent p.I213I 0.75 TCGA-BA-6869-01 10 102256959 102256959 C A SEC31B Missense_Mutation p.G690V 0.25 deleterious(0) probably_damaging(0.988) TCGA-BA-6869-01 10 105218107 105218107 G A CALHM1 Silent p.P134P 0.36 TCGA-BA-6869-01 10 115350515 115350515 A G NRAP Missense_Mutation p.F1593S 0.28 tolerated(0.25) benign(0.053) TCGA-BA-6869-01 10 117061411 117061411 G T ATRNL1 Silent p.L892L 0.24 TCGA-BA-6869-01 10 118386463 118386463 T A PNLIPRP2 Missense_Mutation p.I140N 0.42 deleterious(0) probably_damaging(0.993) TCGA-BA-6869-01 10 124036332 124036332 C A BTBD16 Silent p.V15V 0.17 TCGA-BA-6869-01 10 124399936 124399936 G C DMBT1 Silent p.T2312T 0.31 TCGA-BA-6869-01 10 126370314 126370314 C A FAM53B Silent p.L256L 0.26 TCGA-BA-6869-01 10 129901711 129901711 T C MKI67 Missense_Mutation p.E2798G 0.30 deleterious(0.04) possibly_damaging(0.465) TCGA-BA-6869-01 10 13378324 13378324 G A SEPHS1 Silent p.L108L 0.12 TCGA-BA-6869-01 10 135086312 135086312 T A ADAM8 Missense_Mutation p.H232L 0.36 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 10 16562732 16562732 G A C1QL3 Silent p.N111N 0.11 TCGA-BA-6869-01 10 16870935 16870935 C G CUBN Missense_Mutation p.A3545P 0.58 tolerated(0.21) possibly_damaging(0.808) TCGA-BA-6869-01 10 16916401 16916401 C A CUBN Missense_Mutation p.V3070F 0.14 deleterious(0.01) benign(0.002) TCGA-BA-6869-01 10 24880577 24880577 C A ARHGAP21 Missense_Mutation p.E1346D 0.17 tolerated(0.66) benign(0.212) TCGA-BA-6869-01 10 25885717 25885717 G A GPR158 Missense_Mutation p.R715Q 0.57 deleterious(0) probably_damaging(0.981) TCGA-BA-6869-01 10 43608405 43608405 T A RET Missense_Mutation p.C585S 0.29 deleterious(0) probably_damaging(0.985) TCGA-BA-6869-01 10 50255035 50255035 A C VSTM4 Missense_Mutation p.V277G 0.30 tolerated(0.23) benign(0.004) TCGA-BA-6869-01 10 52103623 52103623 G A SGMS1 Silent p.H84H 0.27 TCGA-BA-6869-01 10 61828625 61828625 C T ANK3 Missense_Mutation p.G4005D 0.30 probably_damaging(0.998) TCGA-BA-6869-01 10 68687991 68687991 C G LRRTM3 Nonsense_Mutation p.Y439* 0.23 TCGA-BA-6869-01 10 75434427 75434427 G T AGAP5 Missense_Mutation p.A664D 0.47 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 10 87487768 87487768 C A GRID1 Missense_Mutation p.Q459H 0.41 tolerated(0.18) probably_damaging(0.942) TCGA-BA-6869-01 10 91177811 91177811 G A IFIT5 Silent p.L285L 0.49 TCGA-BA-6869-01 10 95995801 95995801 G T PLCE1 Nonsense_Mutation p.E782* 0.47 TCGA-BA-6869-01 10 96796938 96796938 T G CYP2C8 Missense_Mutation p.K474Q 0.36 deleterious(0.04) benign(0.001) TCGA-BA-6869-01 10 98770785 98770785 G C SLIT1 Silent p.V1102V 0.25 TCGA-BA-6869-01 11 102649421 102649421 G A MMP10 Missense_Mutation p.P186S 0.35 deleterious(0) probably_damaging(0.996) TCGA-BA-6869-01 11 104912149 104912149 G C CARD16 Missense_Mutation p.T191S 0.37 deleterious_low_confidence(0) benign(0.292) TCGA-BA-6869-01 11 1078313 1078313 C A MUC2 Missense_Mutation p.N200K 0.28 benign(0.209) TCGA-BA-6869-01 11 113295162 113295162 T A DRD2 Missense_Mutation p.Y71F 0.30 deleterious(0) probably_damaging(0.966) TCGA-BA-6869-01 11 117153235 117153235 G A RNF214 Missense_Mutation p.V610M 0.42 tolerated(0.14) benign(0.002) TCGA-BA-6869-01 11 117253621 117253621 G C CEP164 Missense_Mutation p.V563L 0.46 tolerated(0.21) benign(0.02) TCGA-BA-6869-01 11 121475024 121475024 G A SORL1 Missense_Mutation p.A1548T 0.34 tolerated(0.27) benign(0.099) TCGA-BA-6869-01 11 123886995 123886995 G T OR10G4 Missense_Mutation p.Q238H 0.28 deleterious(0) benign(0.35) TCGA-BA-6869-01 11 124189698 124189698 G T OR8D2 Nonsense_Mutation p.Y132* 0.25 TCGA-BA-6869-01 11 126110725 126110725 A C FAM118B Missense_Mutation p.E42A 0.30 deleterious(0) possibly_damaging(0.546) TCGA-BA-6869-01 11 128709440 128709440 T A KCNJ1 Silent p.V252V 0.29 TCGA-BA-6869-01 11 132307171 132307171 G C OPCML Missense_Mutation p.S203R 0.38 tolerated(0.16) possibly_damaging(0.852) TCGA-BA-6869-01 11 13743308 13743308 G T FAR1 Missense_Mutation p.A387S 0.38 tolerated(0.39) benign(0.009) TCGA-BA-6869-01 11 15197552 15197552 G C INSC Missense_Mutation p.V155L 0.44 tolerated(0.15) benign(0.011) TCGA-BA-6869-01 11 15260566 15260566 C A INSC Missense_Mutation p.L494M 0.36 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 11 16834669 16834669 C A PLEKHA7 Silent p.L666L 0.28 TCGA-BA-6869-01 11 18010157 18010157 C G SERGEF Silent p.L277L 0.37 TCGA-BA-6869-01 11 18472631 18472631 G T LDHC Missense_Mutation p.S319I 0.34 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 11 22271793 22271793 G A ANO5 Missense_Mutation p.G297R 0.38 deleterious(0) probably_damaging(0.986) TCGA-BA-6869-01 11 45924289 45924289 G A MAPK8IP1 Missense_Mutation p.R324Q 0.41 tolerated(0.08) benign(0.159) TCGA-BA-6869-01 11 4608485 4608485 T C OR52I2 Missense_Mutation p.M148T 0.18 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 11 4621844 4621844 C G TRIM68 Missense_Mutation p.V374L 0.39 tolerated(0.25) possibly_damaging(0.714) TCGA-BA-6869-01 11 48239279 48239279 A T OR4B1 Silent p.P306P 0.27 TCGA-BA-6869-01 11 5275578 5275578 C T HBG2 Missense_Mutation p.A87T 0.11 tolerated(0.07) possibly_damaging(0.843) TCGA-BA-6869-01 11 5373081 5373081 C G OR51B6 Missense_Mutation p.A115G 0.17 deleterious(0) possibly_damaging(0.611) TCGA-BA-6869-01 11 55761731 55761731 G A OR5F1 Missense_Mutation p.A124V 0.15 tolerated(1) benign(0) TCGA-BA-6869-01 11 56143839 56143839 C T OR8U1 Missense_Mutation p.A247V 0.31 tolerated(0.44) benign(0.167) TCGA-BA-6869-01 11 56237369 56237369 C A OR5M3 Missense_Mutation p.G202V 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-BA-6869-01 11 56258161 56258161 G T OR5M8 Missense_Mutation p.S229Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-BA-6869-01 11 56431878 56431878 C A OR5AR1 Silent p.S239S 0.20 TCGA-BA-6869-01 11 57886521 57886521 A G OR9I1 Silent p.Y132Y 0.24 TCGA-BA-6869-01 11 60073587 60073587 G T MS4A4A Missense_Mutation p.M187I 0.29 tolerated(0.76) benign(0.023) TCGA-BA-6869-01 11 608731 608731 G T PHRF1 Missense_Mutation p.R1091L 0.38 deleterious(0.03) possibly_damaging(0.858) TCGA-BA-6869-01 11 6588904 6588904 C T DNHD1 Silent p.A4055A 0.28 TCGA-BA-6869-01 11 6589744 6589744 C G DNHD1 Missense_Mutation p.T4200S 0.32 benign(0.438) TCGA-BA-6869-01 11 6816345 6816345 T C OR6A2 Missense_Mutation p.T199A 0.27 tolerated(0.3) benign(0.002) TCGA-BA-6869-01 11 71507140 71507140 C A FAM86C1 Missense_Mutation p.S113R 0.28 deleterious(0.01) possibly_damaging(0.881) TCGA-BA-6869-01 11 7507016 7507016 C A OLFML1 5'UTR 0.30 TCGA-BA-6869-01 11 76940195 76940195 C A GDPD4 Missense_Mutation p.W491L 0.27 deleterious(0) possibly_damaging(0.881) TCGA-BA-6869-01 11 77910599 77910599 G T USP35 Intron 0.35 TCGA-BA-6869-01 11 86662821 86662821 G A FZD4 Missense_Mutation p.T326I 0.36 deleterious(0) probably_damaging(0.99) TCGA-BA-6869-01 11 88258477 88258477 C A GRM5 Missense_Mutation p.S909I 0.26 deleterious_low_confidence(0.01) benign(0.002) TCGA-BA-6869-01 11 92087428 92087428 C T FAT3 Missense_Mutation p.S717L 0.25 probably_damaging(0.998) TCGA-BA-6869-01 11 92564960 92564960 T A FAT3 Silent p.S3218S 0.48 TCGA-BA-6869-01 11 99715885 99715885 C A CNTN5 Silent p.T156T 0.31 TCGA-BA-6869-01 11 99941252 99941252 C G CNTN5 Missense_Mutation p.T420R 0.34 tolerated(0.08) probably_damaging(0.96) TCGA-BA-6869-01 11 99944884 99944884 C A CNTN5 Missense_Mutation p.P480T 0.24 deleterious(0) possibly_damaging(0.573) TCGA-BA-6869-01 12 100492321 100492321 T C UHRF1BP1L Splice_Site p.X113_splice 0.41 TCGA-BA-6869-01 12 104187036 104187036 C T NT5DC3 Missense_Mutation p.G309R 0.27 deleterious(0) probably_damaging(0.996) TCGA-BA-6869-01 12 105321903 105321903 T G SLC41A2 Missense_Mutation p.I135L 0.31 tolerated(1) benign(0) TCGA-BA-6869-01 12 106461453 106461453 G T NUAK1 Silent p.S371S 0.31 TCGA-BA-6869-01 12 108603974 108603974 G C WSCD2 Missense_Mutation p.E192Q 0.23 tolerated(0.3) benign(0.105) TCGA-BA-6869-01 12 10959383 10959383 C - TAS2R8 Frame_Shift_Del p.G66Afs*3 0.25 TCGA-BA-6869-01 12 112673511 112673511 G A HECTD4 Missense_Mutation p.P1695L 0.33 benign(0.306) TCGA-BA-6869-01 12 112684766 112684766 G C HECTD4 Silent p.V1338V 0.48 TCGA-BA-6869-01 12 113543582 113543582 G A RASAL1 Silent p.F590F 0.34 TCGA-BA-6869-01 12 113645397 113645397 C T IQCD Missense_Mutation p.G192D 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-BA-6869-01 12 119563220 119563220 C A SRRM4 Missense_Mutation p.R184S 0.40 deleterious_low_confidence(0) unknown(0) TCGA-BA-6869-01 12 120947835 120947835 G C COQ5 Silent p.V222V 0.26 TCGA-BA-6869-01 12 14766128 14766128 G A GUCY2C Missense_Mutation p.R1049W 0.32 deleterious(0) possibly_damaging(0.88) TCGA-BA-6869-01 12 14993877 14993877 G T ART4 Missense_Mutation p.H119N 0.33 deleterious(0) probably_damaging(0.994) TCGA-BA-6869-01 12 15654948 15654948 C G PTPRO Silent p.P352P 0.24 TCGA-BA-6869-01 12 20876190 20876190 T G SLCO1C1 Splice_Site p.X396_splice 0.30 TCGA-BA-6869-01 12 21629893 21629893 T C RECQL Missense_Mutation p.I301V 0.28 tolerated(0.51) benign(0.004) TCGA-BA-6869-01 12 24736660 24736660 G T LINC00477 RNA 0.27 TCGA-BA-6869-01 12 27844781 27844781 G C PPFIBP1 Missense_Mutation p.G935R 0.32 tolerated(0.13) probably_damaging(0.999) TCGA-BA-6869-01 12 32975546 32975547 CA - PKP2 Frame_Shift_Del p.C609Hfs*4 0.26 TCGA-BA-6869-01 12 39720119 39720119 T C KIF21A Silent p.V1116V 0.22 TCGA-BA-6869-01 12 40707845 40707845 G C LRRK2 Silent p.S1536S 0.24 TCGA-BA-6869-01 12 45173741 45173741 G A NELL2 Missense_Mutation p.H184Y 0.27 tolerated(0.17) possibly_damaging(0.545) TCGA-BA-6869-01 12 52881480 52881480 G T KRT6A 3'UTR 0.19 TCGA-BA-6869-01 12 56641850 56641850 G A ANKRD52 Silent p.L645L 0.35 TCGA-BA-6869-01 12 65130829 65130829 T C GNS Silent p.P351P 0.23 TCGA-BA-6869-01 12 6943184 6943184 G T LEPREL2 Nonsense_Mutation p.E476* 0.33 TCGA-BA-6869-01 12 7640427 7640427 T G CD163 Silent p.V559V 0.36 TCGA-BA-6869-01 12 79611283 79611283 C A SYT1 Intron 0.24 TCGA-BA-6869-01 12 81112842 81112842 G T MYF5 3'UTR 0.21 TCGA-BA-6869-01 12 81768458 81768458 A T PPFIA2 Silent p.P407P 0.38 TCGA-BA-6869-01 12 9751243 9751243 G T KLRB1 Missense_Mutation p.P89Q 0.31 deleterious(0) probably_damaging(0.916) TCGA-BA-6869-01 12 977384 977384 A G WNK1 Intron 0.39 TCGA-BA-6869-01 13 109318423 109318423 C A MYO16 Missense_Mutation p.A51E 0.46 deleterious(0.01) benign(0.172) TCGA-BA-6869-01 13 19751082 19751082 G T TUBA3C Nonsense_Mutation p.C347* 0.42 TCGA-BA-6869-01 13 32907114 32907114 G T BRCA2 Missense_Mutation p.G500V 0.42 deleterious(0) probably_damaging(0.943) TCGA-BA-6869-01 13 39343823 39343823 G T FREM2 Missense_Mutation p.R1840L 0.48 deleterious(0.01) benign(0.087) TCGA-BA-6869-01 13 39425200 39425200 G C FREM2 Missense_Mutation p.G2233R 0.39 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 13 60590252 60590252 C T DIAPH3 Silent p.G218G 0.29 TCGA-BA-6869-01 14 100172989 100172989 T A CYP46A1 Nonsense_Mutation p.L150* 0.33 TCGA-BA-6869-01 14 101453434 101453434 G C SNORD114-26 RNA 0.22 TCGA-BA-6869-01 14 105213312 105213312 C T ADSSL1 Missense_Mutation p.S492L 0.19 deleterious(0.02) benign(0.352) TCGA-BA-6869-01 14 105411241 105411241 A C AHNAK2 Missense_Mutation p.L3516R 0.28 possibly_damaging(0.883) TCGA-BA-6869-01 14 106208281 106208281 A G IGHG1 Missense_Mutation p.S207P 0.24 deleterious(0.04) benign(0.213) TCGA-BA-6869-01 14 106208282 106208282 G A IGHG1 Silent p.V206V 0.24 TCGA-BA-6869-01 14 106552434 106552434 C G IGHV3-9 Missense_Mutation p.G69R 0.30 tolerated_low_confidence(0.36) benign(0.003) TCGA-BA-6869-01 14 106780517 106780517 G T IGHV4-28 Missense_Mutation p.A116E 0.29 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-BA-6869-01 14 107083543 107083543 C T IGHV4-59 Missense_Mutation p.V21M 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.655) TCGA-BA-6869-01 14 20019955 20019955 G A POTEM Missense_Mutation p.S89F 0.10 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-BA-6869-01 14 22251695 22251695 A T TRAV7 Silent p.S104S 0.31 TCGA-BA-6869-01 14 22315349 22315349 C A TRAV8-2 Missense_Mutation p.T96K 0.39 tolerated(0.73) benign(0.003) TCGA-BA-6869-01 14 22671053 22671053 A T TRAV26-2 Missense_Mutation p.N40Y 0.28 deleterious(0) probably_damaging(0.982) TCGA-BA-6869-01 14 29236541 29236541 G T FOXG1 Missense_Mutation p.S19I 0.29 deleterious_low_confidence(0) unknown(0) TCGA-BA-6869-01 14 30194823 30194823 G A PRKD1 Missense_Mutation p.P108S 0.27 tolerated(0.39) benign(0.014) TCGA-BA-6869-01 14 38724494 38724494 G A CLEC14A Missense_Mutation p.P245L 0.28 deleterious(0.03) probably_damaging(0.909) TCGA-BA-6869-01 14 65208417 65208417 G C PLEKHG3 Missense_Mutation p.E672Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 14 68274302 68274302 C A ZFYVE26 Silent p.G233G 0.31 TCGA-BA-6869-01 14 92266697 92266697 G A TC2N Silent p.N163N 0.26 TCGA-BA-6869-01 14 93693456 93693456 C T UBR7 3'UTR 0.31 TCGA-BA-6869-01 15 20170203 20170203 C A IGHV1OR15-9 Silent p.L23L 0.31 TCGA-BA-6869-01 15 22369024 22369024 G T OR4M2 Missense_Mutation p.R150M 0.14 tolerated(0.18) benign(0) TCGA-BA-6869-01 15 22382715 22382715 G A OR4N4 Missense_Mutation p.M81I 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-BA-6869-01 15 22383416 22383416 G T OR4N4 Missense_Mutation p.R315I 0.34 deleterious_low_confidence(0.02) benign(0.308) TCGA-BA-6869-01 15 23890799 23890799 G T MAGEL2 Silent p.P94P 0.27 TCGA-BA-6869-01 15 25432739 25432739 G T SNORD115-10 RNA 0.32 TCGA-BA-6869-01 15 25463849 25463849 C A SNORD115-27 5'Flank 0.31 TCGA-BA-6869-01 15 27160007 27160007 C G GABRA5 Missense_Mutation p.H185Q 0.46 tolerated(0.1) probably_damaging(0.935) TCGA-BA-6869-01 15 34640812 34640812 A T NUTM1 Missense_Mutation p.Y220F 0.50 tolerated(0.52) possibly_damaging(0.651) TCGA-BA-6869-01 15 43821049 43821049 T A MAP1A Missense_Mutation p.S2460T 0.58 benign(0.006) TCGA-BA-6869-01 15 52532055 52532055 C A MYO5C Missense_Mutation p.V860L 0.36 tolerated(0.31) benign(0.003) TCGA-BA-6869-01 15 66007893 66007893 T A DENND4A Missense_Mutation p.I626F 0.25 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 15 67757467 67757467 G T IQCH Silent p.V836V 0.35 TCGA-BA-6869-01 15 74178505 74178505 T A TBC1D21 Silent p.A222A 0.29 TCGA-BA-6869-01 15 74335587 74335587 G A PML Intron 0.19 TCGA-BA-6869-01 15 78474423 78474423 T C ACSBG1 Missense_Mutation p.E320G 0.37 deleterious(0.01) benign(0.069) TCGA-BA-6869-01 15 81517813 81517813 C T IL16 Missense_Mutation p.L25F 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-BA-6869-01 15 81625263 81625263 G T TMC3 Missense_Mutation p.R934S 0.22 tolerated_low_confidence(0.06) benign(0.039) TCGA-BA-6869-01 15 84657464 84657464 G T ADAMTSL3 Silent p.G1246G 0.17 TCGA-BA-6869-01 15 85326315 85326315 A C ZNF592 Missense_Mutation p.T137P 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-BA-6869-01 15 86790944 86790944 G C AGBL1 Missense_Mutation p.S144T 0.50 tolerated(0.62) benign(0.012) TCGA-BA-6869-01 15 90227164 90227164 T C PEX11A Missense_Mutation p.N63S 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-BA-6869-01 15 96875646 96875646 G C NR2F2 Missense_Mutation p.K104N 0.24 deleterious(0) probably_damaging(0.992) TCGA-BA-6869-01 16 28493805 28493805 T A CLN3 Missense_Mutation p.Q300L 0.34 deleterious(0) benign(0.082) TCGA-BA-6869-01 16 30456594 30456594 C A SEPHS2 Missense_Mutation p.R152L 0.33 probably_damaging(0.958) TCGA-BA-6869-01 16 31160510 31160510 G T PRSS36 Missense_Mutation p.N52K 0.29 deleterious(0.01) benign(0.169) TCGA-BA-6869-01 16 32893875 32893875 C A RP11-989E6.3 5'Flank 0.19 TCGA-BA-6869-01 16 47345160 47345160 G A ITFG1 Missense_Mutation p.T354I 0.38 tolerated(0.05) benign(0.005) TCGA-BA-6869-01 16 57931410 57931410 T A CNGB1 Missense_Mutation p.N1045Y 0.30 deleterious(0) probably_damaging(0.993) TCGA-BA-6869-01 16 61935119 61935119 G T CDH8 Missense_Mutation p.P171T 0.34 tolerated(0.05) benign(0.17) TCGA-BA-6869-01 16 64984725 64984725 G A CDH11 Silent p.A613A 0.33 TCGA-BA-6869-01 16 65022110 65022110 C A CDH11 Nonsense_Mutation p.E317* 0.40 TCGA-BA-6869-01 16 67916846 67916846 C A EDC4 Intron 0.39 TCGA-BA-6869-01 16 67981323 67981323 C T SLC12A4 Nonsense_Mutation p.W663* 0.31 TCGA-BA-6869-01 16 69727108 69727108 C G NFAT5 Missense_Mutation p.S1127C 0.22 possibly_damaging(0.56) TCGA-BA-6869-01 16 72821667 72821667 T A ZFHX3 Missense_Mutation p.H3503L 0.30 unknown(0) TCGA-BA-6869-01 16 8736032 8736032 A G METTL22 Missense_Mutation p.Y292C 0.19 deleterious(0.01) possibly_damaging(0.619) TCGA-BA-6869-01 16 89351869 89351869 C A ANKRD11 Missense_Mutation p.V361L 0.33 possibly_damaging(0.785) TCGA-BA-6869-01 17 10101583 10101583 C A GAS7 Missense_Mutation p.G42V 0.35 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 17 11757566 11757566 C A DNAH9 Missense_Mutation p.P3252T 0.25 possibly_damaging(0.457) TCGA-BA-6869-01 17 1576801 1576801 C A PRPF8 Missense_Mutation p.Q1169H 0.33 deleterious(0.02) benign(0.104) TCGA-BA-6869-01 17 16285753 16285753 G A UBB Missense_Mutation p.V178M 0.30 deleterious(0.02) probably_damaging(0.931) TCGA-BA-6869-01 17 16342902 16342902 A G TRPV2 3'Flank 0.28 TCGA-BA-6869-01 17 18638707 18638707 C A TRIM16L Silent p.I327I 0.20 TCGA-BA-6869-01 17 3195410 3195410 A G OR3A1 Missense_Mutation p.F156S 0.31 deleterious(0.03) possibly_damaging(0.772) TCGA-BA-6869-01 17 32483062 32483062 G T ASIC2 Missense_Mutation p.L164M 0.25 tolerated(0.1) possibly_damaging(0.491) TCGA-BA-6869-01 17 33497240 33497241 - C UNC45B Frame_Shift_Ins p.A554Cfs*7 0.22 TCGA-BA-6869-01 17 34074283 34074283 G A GAS2L2 Silent p.H279H 0.35 TCGA-BA-6869-01 17 35818669 35818669 G T TADA2A Missense_Mutation p.K216N 0.25 tolerated(0.1) benign(0.115) TCGA-BA-6869-01 17 38079494 38079494 G A ORMDL3 Missense_Mutation p.T66M 0.24 tolerated(0.24) benign(0.067) TCGA-BA-6869-01 17 40362219 40362219 C A STAT5B Missense_Mutation p.G626C 0.35 deleterious(0) probably_damaging(0.996) TCGA-BA-6869-01 17 40822701 40822701 A T PLEKHH3 Missense_Mutation p.L482M 0.49 tolerated(0.15) unknown(0) TCGA-BA-6869-01 17 41477216 41477216 A T ARL4D Missense_Mutation p.Y39F 0.33 deleterious(0.01) possibly_damaging(0.893) TCGA-BA-6869-01 17 42475961 42475961 C A GPATCH8 Nonsense_Mutation p.E1162* 0.28 TCGA-BA-6869-01 17 42852065 42852065 G T ADAM11 Splice_Site p.X390_splice 0.18 TCGA-BA-6869-01 17 44068882 44068882 G C MAPT Missense_Mutation p.Q479H 0.28 tolerated(0.06) possibly_damaging(0.498) TCGA-BA-6869-01 17 44248218 44248218 C A KANSL1 Intron 0.13 TCGA-BA-6869-01 17 56247544 56247544 C T OR4D2 Silent p.N176N 0.32 TCGA-BA-6869-01 17 59489603 59489603 C T C17orf82 Silent p.P89P 0.50 TCGA-BA-6869-01 17 61909358 61909358 A G PSMC5 3'UTR 0.32 TCGA-BA-6869-01 17 61972895 61972895 A T CSH1 Missense_Mutation p.S132T 0.31 tolerated(0.12) possibly_damaging(0.506) TCGA-BA-6869-01 17 67039583 67039583 G C ABCA9 Intron 0.37 TCGA-BA-6869-01 17 67136824 67136824 G T ABCA6 Missense_Mutation p.S7R 0.32 tolerated(0.05) probably_damaging(0.92) TCGA-BA-6869-01 17 6913397 6913397 T C AC027763.2 Intron 0.28 TCGA-BA-6869-01 17 72588218 72588218 A T C17orf77 Silent p.T11T 0.34 TCGA-BA-6869-01 17 7317751 7317751 A T NLGN2 Silent p.S199S 0.28 TCGA-BA-6869-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.23 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 17 7578463 7578463 C G TP53 Missense_Mutation p.R156P 0.27 tolerated(0.22) probably_damaging(0.994) TCGA-BA-6869-01 17 7734089 7734089 G T DNAH2 Missense_Mutation p.W4053C 0.27 probably_damaging(0.997) TCGA-BA-6869-01 17 78326902 78326902 G A RNF213 Intron 0.32 TCGA-BA-6869-01 17 8219105 8219105 C A ARHGEF15 Missense_Mutation p.S485Y 0.46 deleterious(0) possibly_damaging(0.853) TCGA-BA-6869-01 17 8707437 8707437 T C PIK3R6 Missense_Mutation p.Q676R 0.36 tolerated(0.41) benign(0.011) TCGA-BA-6869-01 18 31224903 31224903 C T ASXL3 Silent p.N61N 0.25 TCGA-BA-6869-01 18 3879384 3879384 C G DLGAP1 Missense_Mutation p.D229H 0.44 deleterious(0.05) probably_damaging(0.924) TCGA-BA-6869-01 18 3879506 3879506 C G DLGAP1 Missense_Mutation p.R188P 0.17 deleterious(0.01) benign(0.214) TCGA-BA-6869-01 18 42532199 42532199 A G SETBP1 Missense_Mutation p.Q965R 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-BA-6869-01 18 43316445 43316445 T C SLC14A1 Silent p.N221N 0.24 TCGA-BA-6869-01 18 47806252 47806252 C T MBD1 Splice_Site p.X37_splice 0.23 TCGA-BA-6869-01 18 48331580 48331580 C T MRO Missense_Mutation p.G139S 0.52 tolerated(0.28) benign(0.02) TCGA-BA-6869-01 18 50450211 50450211 G A DCC Missense_Mutation p.E278K 0.45 tolerated(0.42) benign(0.003) TCGA-BA-6869-01 18 64239255 64239255 T C CDH19 Missense_Mutation p.I63V 0.30 tolerated(1) benign(0.01) TCGA-BA-6869-01 18 72247448 72247448 C G CNDP1 Missense_Mutation p.P417R 0.24 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 18 77170505 77170505 C T NFATC1 Missense_Mutation p.P64L 0.47 deleterious(0) possibly_damaging(0.893) TCGA-BA-6869-01 19 10893766 10893766 C T DNM2 Silent p.G273G 0.25 TCGA-BA-6869-01 19 12542408 12542408 C G ZNF443 Missense_Mutation p.G193A 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-BA-6869-01 19 13869957 13869957 G T CCDC130 Silent p.R148R 0.27 TCGA-BA-6869-01 19 14104570 14104570 G A RFX1 Missense_Mutation p.P29L 0.30 tolerated_low_confidence(0.3) unknown(0) TCGA-BA-6869-01 19 1466497 1466497 C T APC2 Missense_Mutation p.S1066L 0.33 benign(0.016) TCGA-BA-6869-01 19 17887482 17887482 C G FCHO1 Missense_Mutation p.P416A 0.23 tolerated(0.14) benign(0.439) TCGA-BA-6869-01 19 20229413 20229413 C A ZNF90 Missense_Mutation p.F350L 0.36 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 19 21205625 21205625 A T ZNF430 Nonsense_Mutation p.K12* 0.29 TCGA-BA-6869-01 19 22154585 22154585 G T ZNF208 Missense_Mutation p.P1084H 0.29 deleterious(0) possibly_damaging(0.541) TCGA-BA-6869-01 19 22363718 22363718 G A ZNF676 Silent p.T267T 0.27 TCGA-BA-6869-01 19 35617862 35617862 G A LGI4 Nonsense_Mutation p.Q230* 0.23 TCGA-BA-6869-01 19 37488355 37488355 G T ZNF568 Nonsense_Mutation p.E524* 0.28 TCGA-BA-6869-01 19 38948913 38948913 T A RYR1 Missense_Mutation p.D716E 0.23 probably_damaging(1) TCGA-BA-6869-01 19 40317964 40317964 C A DYRK1B Silent p.G352G 0.38 TCGA-BA-6869-01 19 41809959 41809959 A T HNRNPUL1 Missense_Mutation p.R685S 0.40 deleterious(0.03) unknown(0) TCGA-BA-6869-01 19 45731307 45731307 G A EXOC3L2 Missense_Mutation p.A73V 0.23 deleterious(0) probably_damaging(0.95) TCGA-BA-6869-01 19 47422368 47422368 G T ARHGAP35 Nonsense_Mutation p.E146* 0.36 TCGA-BA-6869-01 19 49902726 49902726 C G CCDC155 Missense_Mutation p.Q254E 0.39 deleterious(0) possibly_damaging(0.826) TCGA-BA-6869-01 19 51532508 51532508 C A KLK12 Intron 0.28 TCGA-BA-6869-01 19 52222623 52222623 C A HAS1 Missense_Mutation p.A180S 0.27 tolerated(0.73) benign(0.004) TCGA-BA-6869-01 19 52272136 52272136 G C FPR2 Silent p.T75T 0.23 TCGA-BA-6869-01 19 53625859 53625859 C A ZNF415 5'UTR 0.34 TCGA-BA-6869-01 19 53793937 53793937 G A BIRC8 5'UTR 0.33 TCGA-BA-6869-01 19 55365471 55365471 C A KIR3DL2 Missense_Mutation p.P209T 0.36 deleterious(0) benign(0.218) TCGA-BA-6869-01 19 55707974 55707974 G A PTPRH Missense_Mutation p.R725W 0.39 benign(0.008) TCGA-BA-6869-01 19 55817783 55817783 G A BRSK1 Missense_Mutation p.G685D 0.22 tolerated(0.29) benign(0.076) TCGA-BA-6869-01 19 58453833 58453833 G T ZNF256 Missense_Mutation p.Q115K 0.28 tolerated(0.06) possibly_damaging(0.49) TCGA-BA-6869-01 19 58469922 58469922 C - C19orf18 3'UTR 0.26 TCGA-BA-6869-01 19 58983146 58983146 G C ZNF324 Missense_Mutation p.Q429H 0.29 tolerated(0.06) benign(0.056) TCGA-BA-6869-01 19 852883 852883 G A ELANE Silent p.A25A 0.52 TCGA-BA-6869-01 19 9070007 9070007 C G MUC16 Missense_Mutation p.E5813D 0.20 unknown(0) TCGA-BA-6869-01 19 9075389 9075389 G A MUC16 Silent p.D4019D 0.32 TCGA-BA-6869-01 1 107691139 107691139 A G NTNG1 5'UTR 0.29 TCGA-BA-6869-01 1 110129355 110129355 G A GNAI3 Missense_Mutation p.R242Q 0.38 deleterious(0) probably_damaging(0.996) TCGA-BA-6869-01 1 11094882 11094882 T C MASP2 Intron 0.41 TCGA-BA-6869-01 1 11596423 11596423 C T PTCHD2 Missense_Mutation p.R1287W 0.10 deleterious(0) probably_damaging(0.971) TCGA-BA-6869-01 1 119474346 119474346 A T TBX15 5'UTR 0.35 TCGA-BA-6869-01 1 119575893 119575893 C A WARS2 Missense_Mutation p.D242Y 0.34 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 1 11982754 11982754 A C KIAA2013 Missense_Mutation p.L609R 0.34 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 1 12854287 12854287 G A PRAMEF1 Missense_Mutation p.V171I 0.21 tolerated(0.19) probably_damaging(0.913) TCGA-BA-6869-01 1 12939515 12939515 G T PRAMEF4 Nonsense_Mutation p.C429* 0.36 TCGA-BA-6869-01 1 1430870 1430870 G A ATAD3B Silent p.T540T 0.59 TCGA-BA-6869-01 1 151611499 151611499 G T SNX27 Silent p.S149S 0.32 TCGA-BA-6869-01 1 151774763 151774763 G A LINGO4 Missense_Mutation p.R140C 0.32 deleterious(0) possibly_damaging(0.871) TCGA-BA-6869-01 1 152284331 152284331 C G FLG Missense_Mutation p.E1011Q 0.34 benign(0.235) TCGA-BA-6869-01 1 15392336 15392336 G C KAZN Intron 0.22 TCGA-BA-6869-01 1 158369186 158369186 A T OR10T2 Missense_Mutation p.L24H 0.26 tolerated(0.59) possibly_damaging(0.905) TCGA-BA-6869-01 1 159898079 159898079 G A IGSF9 Silent p.F1033F 0.42 TCGA-BA-6869-01 1 161599754 161599754 G C FCGR3B Missense_Mutation p.L81V 0.24 deleterious(0) probably_damaging(0.98) TCGA-BA-6869-01 1 16378026 16378026 G T CLCNKB Missense_Mutation p.M427I 0.30 tolerated(0.17) possibly_damaging(0.58) TCGA-BA-6869-01 1 1670363 1670363 C T SLC35E2 Missense_Mutation p.M152I 0.22 tolerated(0.05) possibly_damaging(0.585) TCGA-BA-6869-01 1 170633413 170633413 C A PRRX1 Silent p.R18R 0.43 TCGA-BA-6869-01 1 175092651 175092651 T A TNN Silent p.A922A 0.26 TCGA-BA-6869-01 1 176526361 176526361 C A PAPPA2 Missense_Mutation p.N301K 0.22 deleterious(0.01) possibly_damaging(0.744) TCGA-BA-6869-01 1 197008432 197008432 T A F13B 3'UTR 0.29 TCGA-BA-6869-01 1 197030098 197030098 C A F13B Missense_Mutation p.A187S 0.25 tolerated(0.18) benign(0.159) TCGA-BA-6869-01 1 197115517 197115517 C A ASPM Missense_Mutation p.E17D 0.29 tolerated(0.1) benign(0.05) TCGA-BA-6869-01 1 198687375 198687375 A G PTPRC Missense_Mutation p.K535E 0.34 tolerated(0.66) benign(0.003) TCGA-BA-6869-01 1 200954076 200954076 G C KIF21B Silent p.P1238P 0.19 TCGA-BA-6869-01 1 206224591 206224591 G C AVPR1B Missense_Mutation p.G51R 0.28 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 1 207072725 207072725 C A IL24 Nonsense_Mutation p.C36* 0.35 TCGA-BA-6869-01 1 207649656 207649656 G A CR2 Missense_Mutation p.G932R 0.24 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 1 215901506 215901506 C G USH2A Missense_Mutation p.A3978P 0.38 possibly_damaging(0.558) TCGA-BA-6869-01 1 216019335 216019335 A T USH2A Silent p.L2962L 0.31 TCGA-BA-6869-01 1 240255689 240255689 C T FMN2 Missense_Mutation p.R94C 0.32 unknown(0) TCGA-BA-6869-01 1 240601394 240601394 A T FMN2 Missense_Mutation p.K1648N 0.32 possibly_damaging(0.898) TCGA-BA-6869-01 1 243289810 243289810 T C CEP170 Missense_Mutation p.I1566V 0.33 tolerated_low_confidence(0.07) benign(0.292) TCGA-BA-6869-01 1 248004808 248004808 G T OR11L1 Missense_Mutation p.R131S 0.28 deleterious(0.02) benign(0.041) TCGA-BA-6869-01 1 248005080 248005080 A G OR11L1 Missense_Mutation p.I40T 0.31 tolerated(0.97) benign(0) TCGA-BA-6869-01 1 248308495 248308495 G C OR2M5 Missense_Mutation p.G16R 0.28 deleterious(0) probably_damaging(0.984) TCGA-BA-6869-01 1 248551324 248551324 C A OR2T6 Silent p.R139R 0.24 TCGA-BA-6869-01 1 248790416 248790416 G C OR2T11 Nonsense_Mutation p.S5* 0.30 TCGA-BA-6869-01 1 248813780 248813780 T A OR2T27 Missense_Mutation p.M136L 0.27 deleterious(0.02) benign(0.016) TCGA-BA-6869-01 1 26510929 26510929 C T CNKSR1 Silent p.P346P 0.39 TCGA-BA-6869-01 1 31187158 31187158 G A MATN1 Silent p.A459A 0.22 TCGA-BA-6869-01 1 32267266 32267266 T C SPOCD1 Missense_Mutation p.Y475C 0.26 deleterious(0) probably_damaging(0.982) TCGA-BA-6869-01 1 43772569 43772569 G C TIE1 Missense_Mutation p.Q181H 0.27 tolerated(0.32) benign(0.176) TCGA-BA-6869-01 1 52826198 52826198 G A CC2D1B Silent p.H167H 0.31 TCGA-BA-6869-01 1 70300502 70300502 G T LRRC7 Missense_Mutation p.Q142H 0.30 tolerated(0.13) probably_damaging(0.992) TCGA-BA-6869-01 1 75097586 75097586 C A C1orf173 Missense_Mutation p.R210S 0.43 deleterious(0.05) benign(0.267) TCGA-BA-6869-01 1 7723703 7723703 C A CAMTA1 Missense_Mutation p.L366I 0.36 deleterious_low_confidence(0.04) probably_damaging(0.99) TCGA-BA-6869-01 1 78332059 78332059 A T FAM73A Nonsense_Mutation p.K516* 0.29 TCGA-BA-6869-01 1 82416749 82416749 A G LPHN2 Missense_Mutation p.K514E 0.30 tolerated(0.27) benign(0.341) TCGA-BA-6869-01 1 86961284 86961284 G A CLCA1 Missense_Mutation p.G680E 0.34 tolerated(0.23) probably_damaging(0.972) TCGA-BA-6869-01 1 93167773 93167773 C A EVI5 Splice_Site p.X233_splice 0.40 TCGA-BA-6869-01 20 14306690 14306693 TAGA GAGAT FLRT3 Frame_Shift_Ins p.L487Hfs*5 0.21 TCGA-BA-6869-01 20 30610545 30610545 G T CCM2L Missense_Mutation p.R339L 0.23 deleterious(0) probably_damaging(0.985) TCGA-BA-6869-01 20 31877739 31877739 G T BPIFB1 Silent p.S102S 0.25 TCGA-BA-6869-01 20 36952317 36952317 C T BPI Missense_Mutation p.P272S 0.33 deleterious(0.02) possibly_damaging(0.497) TCGA-BA-6869-01 20 3735131 3735131 C G C20orf27 Missense_Mutation p.E138Q 0.31 deleterious(0) probably_damaging(0.994) TCGA-BA-6869-01 20 37378668 37378668 C T ACTR5 Missense_Mutation p.P131S 0.30 deleterious(0) probably_damaging(0.94) TCGA-BA-6869-01 20 57769304 57769304 G T ZNF831 Missense_Mutation p.R1077L 0.21 tolerated(0.34) benign(0.038) TCGA-BA-6869-01 20 60581806 60581806 T C TAF4 Silent p.L661L 0.35 TCGA-BA-6869-01 20 62597874 62597874 G A ZNF512B Silent p.V218V 0.28 TCGA-BA-6869-01 20 7864155 7864155 C A HAO1 3'UTR 0.38 TCGA-BA-6869-01 20 9561116 9561116 G T PAK7 Silent p.A222A 0.31 TCGA-BA-6869-01 21 11039216 11039216 G T BAGE2 RNA 0.08 TCGA-BA-6869-01 21 31971084 31971084 C G KRTAP6-2 Missense_Mutation p.C37S 0.29 unknown(0) TCGA-BA-6869-01 21 34018775 34018775 C A SYNJ1 Missense_Mutation p.G1098C 0.38 tolerated(0.19) benign(0.011) TCGA-BA-6869-01 21 36042977 36042977 G C CLIC6 Silent p.A430A 0.56 TCGA-BA-6869-01 21 41505903 41505903 T A DSCAM Missense_Mutation p.Q1147L 0.32 tolerated(0.12) benign(0.193) TCGA-BA-6869-01 21 47704494 47704494 C G MCM3AP Missense_Mutation p.R236T 0.24 tolerated(0.45) possibly_damaging(0.691) TCGA-BA-6869-01 21 47704507 47704507 C G MCM3AP Missense_Mutation p.E232Q 0.25 tolerated(0.27) probably_damaging(0.995) TCGA-BA-6869-01 21 47821563 47821563 G - PCNT Frame_Shift_Del p.G1631Afs*11 0.31 TCGA-BA-6869-01 21 48019265 48019265 G T S100B 3'UTR 0.22 TCGA-BA-6869-01 22 16449523 16449523 G - OR11H1 Frame_Shift_Del p.K95Rfs*36 0.12 TCGA-BA-6869-01 22 18111438 18111438 G T ATP6V1E1 5'UTR 0.34 TCGA-BA-6869-01 22 22843555 22843555 C G ZNF280B Missense_Mutation p.V57L 0.33 deleterious(0.01) possibly_damaging(0.61) TCGA-BA-6869-01 22 23465617 23465617 G A GNAZ Silent p.%3D 0.50 TCGA-BA-6869-01 22 24584279 24584279 C A SUSD2 Missense_Mutation p.R810S 0.26 deleterious(0) benign(0.067) TCGA-BA-6869-01 22 24622662 24622662 C G GGT5 Silent p.T325T 0.25 TCGA-BA-6869-01 22 26995525 26995525 G T CRYBB1 Missense_Mutation p.R230S 0.31 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 22 29835041 29835041 G A RFPL1 Silent p.K87K 0.29 TCGA-BA-6869-01 22 31059931 31059931 G C DUSP18 Silent p.L20L 0.27 TCGA-BA-6869-01 22 31060022 31060022 G A DUSP18 5'UTR 0.32 TCGA-BA-6869-01 22 38471178 38471178 G A PICK1 3'UTR 0.29 TCGA-BA-6869-01 22 46722418 46722418 C T GTSE1 Missense_Mutation p.P531S 0.38 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 2 102788275 102788275 T A IL1R1 Missense_Mutation p.L246M 0.22 tolerated(0.3) probably_damaging(0.998) TCGA-BA-6869-01 2 108626897 108626897 T A SLC5A7 Silent p.S441S 0.23 TCGA-BA-6869-01 2 10923308 10923308 G A ATP6V1C2 Silent p.V401V 0.30 TCGA-BA-6869-01 2 138320906 138320906 C A THSD7B Missense_Mutation p.T1088K 0.33 deleterious(0) unknown(0) TCGA-BA-6869-01 2 141092122 141092122 C A LRP1B Missense_Mutation p.M4041I 0.30 benign(0.072) TCGA-BA-6869-01 2 141108566 141108566 T A LRP1B Missense_Mutation p.I3898F 0.26 benign(0.227) TCGA-BA-6869-01 2 141208166 141208166 C G LRP1B Missense_Mutation p.G3343A 0.22 probably_damaging(0.939) TCGA-BA-6869-01 2 1457542 1457542 C A TPO Missense_Mutation p.Q187K 0.32 tolerated(0.09) possibly_damaging(0.685) TCGA-BA-6869-01 2 152563504 152563504 T C NEB Missense_Mutation p.Y348C 0.31 probably_damaging(0.917) TCGA-BA-6869-01 2 164467533 164467533 G T FIGN Missense_Mutation p.P270Q 0.34 tolerated(0.08) probably_damaging(0.965) TCGA-BA-6869-01 2 166152308 166152308 A C SCN2A 5'UTR 0.21 TCGA-BA-6869-01 2 166850763 166850763 A G SCN1A Missense_Mutation p.V1582A 0.27 tolerated(0.67) benign(0.31) TCGA-BA-6869-01 2 167056252 167056252 G T SCN9A Missense_Mutation p.L1622M 0.34 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 2 167056253 167056253 C G SCN9A Silent p.T1621T 0.33 TCGA-BA-6869-01 2 168099600 168099600 G T XIRP2 Missense_Mutation p.W566C 0.32 probably_damaging(1) TCGA-BA-6869-01 2 1684055 1684055 C G PXDN Missense_Mutation p.G214R 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-BA-6869-01 2 178301756 178301756 G T AGPS Missense_Mutation p.R204L 0.30 deleterious(0) probably_damaging(0.985) TCGA-BA-6869-01 2 179481873 179481873 C A TTN Missense_Mutation p.G15950V 0.27 TCGA-BA-6869-01 2 179577472 179577472 T A TTN Missense_Mutation p.S9094C 0.25 TCGA-BA-6869-01 2 179659227 179659227 C T TTN Missense_Mutation p.V433I 0.18 TCGA-BA-6869-01 2 179718165 179718165 C T CCDC141 Intron 0.30 TCGA-BA-6869-01 2 180835757 180835757 C G CWC22 Missense_Mutation p.R284T 0.41 tolerated(0.15) benign(0.055) TCGA-BA-6869-01 2 180851515 180851515 C G CWC22 Missense_Mutation p.R38P 0.47 deleterious(0.03) benign(0.011) TCGA-BA-6869-01 2 196581405 196581405 G A SLC39A10 Missense_Mutation p.E581K 0.37 deleterious(0.02) probably_damaging(0.934) TCGA-BA-6869-01 2 196659141 196659141 C T DNAH7 Missense_Mutation p.G3546D 0.29 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 2 196659142 196659142 C A DNAH7 Missense_Mutation p.G3546C 0.29 deleterious(0.01) probably_damaging(1) TCGA-BA-6869-01 2 196674504 196674504 A C DNAH7 Missense_Mutation p.C3285G 0.38 deleterious(0) benign(0.065) TCGA-BA-6869-01 2 197092955 197092955 C A HECW2 Missense_Mutation p.R1263I 0.41 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 2 202900651 202900651 G A FZD7 Silent p.A427A 0.05 TCGA-BA-6869-01 2 208632914 208632914 C A FZD5 Missense_Mutation p.A184S 0.54 tolerated(0.84) benign(0.003) TCGA-BA-6869-01 2 21231404 21231404 T A APOB Missense_Mutation p.N2779I 0.38 probably_damaging(0.997) TCGA-BA-6869-01 2 225371641 225371641 C G CUL3 Missense_Mutation p.L321F 0.43 deleterious(0) probably_damaging(0.941) TCGA-BA-6869-01 2 228563910 228563910 A T SLC19A3 Missense_Mutation p.V174D 0.23 deleterious(0) probably_damaging(0.936) TCGA-BA-6869-01 2 228890142 228890142 C T SPHKAP Missense_Mutation p.G137R 0.24 deleterious(0) possibly_damaging(0.889) TCGA-BA-6869-01 2 229890250 229890250 T A PID1 3'UTR 0.21 TCGA-BA-6869-01 2 230652349 230652349 G A TRIP12 Nonsense_Mutation p.Q1548* 0.29 TCGA-BA-6869-01 2 238277511 238277511 G T COL6A3 Missense_Mutation p.A1532E 0.42 probably_damaging(1) TCGA-BA-6869-01 2 242741244 242741244 C T GAL3ST2 Silent p.F56F 0.34 TCGA-BA-6869-01 2 31598392 31598392 C A XDH Missense_Mutation p.V486L 0.41 deleterious(0) benign(0.142) TCGA-BA-6869-01 2 39971589 39971589 T C THUMPD2 Missense_Mutation p.I370V 0.37 tolerated(1) benign(0.005) TCGA-BA-6869-01 2 48848069 48848069 A G STON1-GTF2A1L Missense_Mutation p.Q738R 0.40 tolerated(0.3) benign(0.363) TCGA-BA-6869-01 2 51254950 51254950 G A NRXN1 Silent p.F154F 0.19 TCGA-BA-6869-01 2 68521024 68521024 C A CNRIP1 Silent p.L155L 0.37 TCGA-BA-6869-01 2 71839829 71839829 G T DYSF Missense_Mutation p.R1427L 0.30 deleterious(0) probably_damaging(0.934) TCGA-BA-6869-01 2 79254295 79254295 C A REG3G Missense_Mutation p.Q111K 0.33 tolerated(0.75) benign(0.006) TCGA-BA-6869-01 2 79365157 79365157 G T REG1P RNA 0.27 TCGA-BA-6869-01 2 80529964 80529964 C T LRRTM1 Silent p.S327S 0.27 TCGA-BA-6869-01 2 88405918 88405918 G C SMYD1 Silent p.R352R 0.34 TCGA-BA-6869-01 2 90078030 90078030 G A IGKV3D-20 Missense_Mutation p.V23M 0.63 deleterious(0.02) benign(0.399) TCGA-BA-6869-01 2 90153779 90153779 T A IGKV3D-15 Missense_Mutation p.L12Q 0.38 deleterious(0) probably_damaging(0.974) TCGA-BA-6869-01 2 90229092 90229092 C A IGKV1D-42 Missense_Mutation p.L10M 0.60 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 2 98999860 98999860 C T CNGA3 Silent p.P135P 0.16 TCGA-BA-6869-01 2 99439551 99439551 G T KIAA1211L Silent p.P395P 0.42 TCGA-BA-6869-01 3 109047837 109047837 T A DPPA4 Nonsense_Mutation p.K260* 0.55 TCGA-BA-6869-01 3 112005720 112005720 C A SLC9C1 5'UTR 0.67 TCGA-BA-6869-01 3 122662294 122662294 G T SEMA5B Silent p.I193I 0.35 TCGA-BA-6869-01 3 125032301 125032301 C T ZNF148 Missense_Mutation p.E62K 0.65 tolerated(0.06) possibly_damaging(0.733) TCGA-BA-6869-01 3 129249874 129249874 G C RHO Missense_Mutation p.A173P 0.29 deleterious(0.03) benign(0.219) TCGA-BA-6869-01 3 130293227 130293227 G A COL6A6 Silent p.V1135V 0.62 TCGA-BA-6869-01 3 133657272 133657272 C - SLCO2A1 Splice_Site p.X564_splice 0.47 TCGA-BA-6869-01 3 140167468 140167468 A T CLSTN2 Missense_Mutation p.T299S 0.21 deleterious(0) benign(0.01) TCGA-BA-6869-01 3 154802866 154802866 C G MME Nonsense_Mutation p.S60* 0.79 TCGA-BA-6869-01 3 157146169 157146169 G T VEPH1 Missense_Mutation p.P213Q 0.77 deleterious(0.04) possibly_damaging(0.655) TCGA-BA-6869-01 3 164724621 164724621 C A SI Missense_Mutation p.Q1463H 0.71 tolerated(0.1) probably_damaging(0.989) TCGA-BA-6869-01 3 164785240 164785240 G C SI Missense_Mutation p.Q175E 0.14 tolerated(1) benign(0.017) TCGA-BA-6869-01 3 164907946 164907946 T A SLITRK3 Missense_Mutation p.M225L 0.41 deleterious(0.01) probably_damaging(0.974) TCGA-BA-6869-01 3 167068208 167068208 C A ZBBX Missense_Mutation p.Q176H 0.18 deleterious(0) probably_damaging(0.991) TCGA-BA-6869-01 3 168834254 168834254 T C MECOM Missense_Mutation p.Y346C 0.14 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 3 17052928 17052928 G C PLCL2 Missense_Mutation p.C571S 0.46 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 3 170843830 170843830 C A TNIK Silent p.V628V 0.19 TCGA-BA-6869-01 3 180372672 180372672 C - CCDC39 Frame_Shift_Del p.E270Kfs*22 0.52 TCGA-BA-6869-01 3 184429677 184429677 C A MAGEF1 5'UTR 0.73 TCGA-BA-6869-01 3 185161246 185161246 C T MAP3K13 Nonsense_Mutation p.Q225* 0.68 TCGA-BA-6869-01 3 42445602 42445602 T C LYZL4 Missense_Mutation p.N103D 0.59 tolerated(0.36) benign(0.01) TCGA-BA-6869-01 3 42906247 42906247 C G ACKR2 Missense_Mutation p.L85V 0.50 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 3 44449031 44449031 G C TCAIM Missense_Mutation p.V450L 0.39 deleterious(0.02) benign(0.153) TCGA-BA-6869-01 3 44636619 44636619 C T ZNF660 Missense_Mutation p.R312W 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-BA-6869-01 3 44945437 44945437 G A TGM4 Missense_Mutation p.G345S 0.42 deleterious(0.02) possibly_damaging(0.901) TCGA-BA-6869-01 3 49149744 49149744 C A USP19 Missense_Mutation p.R911L 0.40 deleterious(0) probably_damaging(0.979) TCGA-BA-6869-01 3 75471976 75471976 T G FAM86DP RNA 0.60 TCGA-BA-6869-01 3 77651571 77651571 G - ROBO2 Frame_Shift_Del p.S1038Tfs*9 0.49 TCGA-BA-6869-01 4 10444812 10444812 G A ZNF518B Silent p.D1047D 0.27 TCGA-BA-6869-01 4 109674060 109674060 A T ETNPPL Missense_Mutation p.S203R 0.27 tolerated(0.38) benign(0.002) TCGA-BA-6869-01 4 111452358 111452358 A G ENPEP Missense_Mutation p.T578A 0.40 tolerated(0.12) benign(0.103) TCGA-BA-6869-01 4 114214656 114214656 C A ANK2 Missense_Mutation p.L813M 0.37 probably_damaging(0.999) TCGA-BA-6869-01 4 129770159 129770159 C T JADE1 Silent p.L107L 0.29 TCGA-BA-6869-01 4 138452706 138452706 A T PCDH18 Missense_Mutation p.N179K 0.30 deleterious(0) probably_damaging(0.955) TCGA-BA-6869-01 4 142053645 142053645 G T RNF150 Silent p.T106T 0.42 TCGA-BA-6869-01 4 156629432 156629432 A C GUCY1A3 Missense_Mutation p.Q121P 0.32 tolerated(0.37) benign(0.167) TCGA-BA-6869-01 4 164247365 164247365 C G NPY1R Missense_Mutation p.K114N 0.28 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 4 165962140 165962140 C A TRIM60 Missense_Mutation p.P306T 0.32 tolerated(0.06) possibly_damaging(0.841) TCGA-BA-6869-01 4 169305796 169305796 G T DDX60L Silent p.S1361S 0.29 TCGA-BA-6869-01 4 169630280 169630280 C A PALLD Missense_Mutation p.Q535K 0.33 deleterious(0.04) benign(0.083) TCGA-BA-6869-01 4 21305453 21305453 C A KCNIP4 Intron 0.16 TCGA-BA-6869-01 4 21305454 21305454 C G KCNIP4 Intron 0.16 TCGA-BA-6869-01 4 3494900 3494900 A T DOK7 Missense_Mutation p.Q396L 0.38 deleterious(0.02) probably_damaging(0.989) TCGA-BA-6869-01 4 3516631 3516631 T A LRPAP1 Nonsense_Mutation p.K287* 0.32 TCGA-BA-6869-01 4 36075423 36075423 G C ARAP2 Missense_Mutation p.P1544R 0.34 deleterious(0.03) benign(0.003) TCGA-BA-6869-01 4 41749478 41749478 G C PHOX2B Missense_Mutation p.T106S 0.26 deleterious(0.04) probably_damaging(0.994) TCGA-BA-6869-01 4 46042982 46042982 G A GABRG1 3'UTR 0.16 TCGA-BA-6869-01 4 55156559 55156559 C A PDGFRA Missense_Mutation p.A987E 0.26 tolerated(0.61) benign(0.046) TCGA-BA-6869-01 4 55592133 55592133 A T KIT Missense_Mutation p.N486I 0.31 deleterious(0.03) possibly_damaging(0.847) TCGA-BA-6869-01 4 55987310 55987310 C T KDR Missense_Mutation p.D39N 0.19 tolerated(0.19) benign(0.003) TCGA-BA-6869-01 4 57190344 57190344 A G KIAA1211 Silent p.P1151P 0.30 TCGA-BA-6869-01 4 65180375 65180375 G A TECRL Missense_Mutation p.P181L 0.30 tolerated(0.23) benign(0.038) TCGA-BA-6869-01 4 67142589 67142589 C G MIR1269A RNA 0.36 TCGA-BA-6869-01 4 68919654 68919654 A G TMPRSS11F Silent p.D430D 0.33 TCGA-BA-6869-01 4 69693223 69693223 A G UGT2B10 Missense_Mutation p.T422A 0.36 tolerated(0.78) benign(0.002) TCGA-BA-6869-01 4 69978304 69978304 C A UGT2B7 Silent p.A480A 0.30 TCGA-BA-6869-01 4 72622457 72622457 C A GC Missense_Mutation p.D355Y 0.18 deleterious(0.01) possibly_damaging(0.695) TCGA-BA-6869-01 4 72629169 72629169 G C GC Silent p.V238V 0.27 TCGA-BA-6869-01 5 126154638 126154638 C G LMNB1 Missense_Mutation p.Q322E 0.63 deleterious(0.01) benign(0.071) TCGA-BA-6869-01 5 127595187 127595187 C A FBN2 Missense_Mutation p.G2900V 0.57 deleterious(0.04) benign(0.013) TCGA-BA-6869-01 5 127702106 127702106 A T FBN2 Missense_Mutation p.C756S 0.54 deleterious(0) possibly_damaging(0.881) TCGA-BA-6869-01 5 135379745 135379745 A G TGFBI Splice_Site p.X78_splice 0.64 TCGA-BA-6869-01 5 135692763 135692763 G A TRPC7 Missense_Mutation p.R105W 0.63 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 5 140188125 140188125 C T PCDHA4 Silent p.N451N 0.71 TCGA-BA-6869-01 5 140209711 140209711 T A PCDHA6 Missense_Mutation p.S679T 0.58 deleterious_low_confidence(0.02) benign(0.187) TCGA-BA-6869-01 5 140223346 140223346 T C PCDHA8 Intron 0.53 TCGA-BA-6869-01 5 140236619 140236619 T C PCDHA10 Missense_Mutation p.M329T 0.45 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-BA-6869-01 5 140237225 140237225 A T PCDHA10 Missense_Mutation p.Q531L 0.61 deleterious_low_confidence(0) benign(0.14) TCGA-BA-6869-01 5 140256339 140256339 C A PCDHA12 Silent p.R428R 0.61 TCGA-BA-6869-01 5 140480891 140480891 C - PCDHB3 Frame_Shift_Del p.P221Lfs*8 0.45 TCGA-BA-6869-01 5 140554035 140554035 C T PCDHB7 Missense_Mutation p.A540V 0.57 deleterious_low_confidence(0.03) possibly_damaging(0.492) TCGA-BA-6869-01 5 140762824 140762824 G T PCDHGA7 Missense_Mutation p.D120Y 0.61 deleterious_low_confidence(0) benign(0.243) TCGA-BA-6869-01 5 146017900 146017900 C G PPP2R2B Missense_Mutation p.C238S 0.67 deleterious(0.02) possibly_damaging(0.879) TCGA-BA-6869-01 5 176637520 176637520 C G NSD1 Nonsense_Mutation p.S707* 0.63 TCGA-BA-6869-01 5 33535075 33535075 C A ADAMTS12 Missense_Mutation p.G1490V 0.42 deleterious(0) probably_damaging(0.997) TCGA-BA-6869-01 5 3599662 3599662 G C IRX1 Missense_Mutation p.Q200H 0.38 deleterious(0.01) possibly_damaging(0.801) TCGA-BA-6869-01 5 3599663 3599663 G T IRX1 Nonsense_Mutation p.E201* 0.37 TCGA-BA-6869-01 5 37727134 37727134 C T WDR70 Missense_Mutation p.P622S 0.43 deleterious(0) probably_damaging(0.973) TCGA-BA-6869-01 5 39306836 39306836 G C C9 Silent p.T433T 0.29 TCGA-BA-6869-01 5 40843302 40843302 G C CARD6 Missense_Mutation p.S111T 0.36 tolerated(0.15) benign(0.218) TCGA-BA-6869-01 5 41160245 41160245 G T C6 Silent p.S561S 0.35 TCGA-BA-6869-01 5 43298817 43298817 T C HMGCS1 Missense_Mutation p.Y84C 0.37 tolerated(0.17) probably_damaging(0.98) TCGA-BA-6869-01 5 45262356 45262356 G C HCN1 Silent p.T780T 0.26 TCGA-BA-6869-01 5 45396681 45396681 G T HCN1 Silent p.V381V 0.20 TCGA-BA-6869-01 5 5319261 5319261 G C ADAMTS16 3'UTR 0.34 TCGA-BA-6869-01 5 54442506 54442509 GCTT - CDC20B Frame_Shift_Del p.E101Vfs*6 0.27 TCGA-BA-6869-01 5 70798483 70798483 A G BDP1 Silent p.V702V 0.60 TCGA-BA-6869-01 5 71492996 71492996 C A MAP1B Missense_Mutation p.L1272M 0.68 probably_damaging(0.953) TCGA-BA-6869-01 5 74069717 74069717 G C NSA2 Missense_Mutation p.V183L 0.62 deleterious(0.02) benign(0.005) TCGA-BA-6869-01 5 88119602 88119602 C A MEF2C Missense_Mutation p.G2W 0.48 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 5 88119603 88119603 C A MEF2C Translation_Start_Site p.M1? 0.48 deleterious(0) possibly_damaging(0.899) TCGA-BA-6869-01 5 89986666 89986666 G A GPR98 Silent p.K2253K 0.59 TCGA-BA-6869-01 5 9154600 9154600 C A SEMA5A Missense_Mutation p.S494I 0.48 tolerated(0.12) benign(0.007) TCGA-BA-6869-01 5 93076445 93076445 C T POU5F2 Silent p.R275R 0.27 TCGA-BA-6869-01 6 106547326 106547326 A T PRDM1 Missense_Mutation p.K188M 0.45 deleterious(0) probably_damaging(0.992) TCGA-BA-6869-01 6 117127963 117127963 C A GPRC6A Missense_Mutation p.S302I 0.52 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 6 132043384 132043384 C A ENPP3 Missense_Mutation p.P529T 0.54 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 6 132859539 132859539 C T TAAR9 Silent p.A37A 0.65 TCGA-BA-6869-01 6 13977639 13977639 G A RNF182 Missense_Mutation p.G97R 0.39 tolerated(0.5) benign(0.043) TCGA-BA-6869-01 6 146755793 146755793 C T GRM1 Missense_Mutation p.S1149L 0.10 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-BA-6869-01 6 148867161 148867161 G T SASH1 Missense_Mutation p.C1120F 0.66 deleterious(0.02) probably_damaging(0.997) TCGA-BA-6869-01 6 150005102 150005102 G A LATS1 Missense_Mutation p.P375S 0.58 tolerated_low_confidence(0.14) probably_damaging(0.948) TCGA-BA-6869-01 6 152605236 152605236 C G SYNE1 Silent p.L6028L 0.59 TCGA-BA-6869-01 6 152631122 152631122 G A SYNE1 Missense_Mutation p.P5684S 0.63 probably_damaging(0.974) TCGA-BA-6869-01 6 153077303 153077303 C A VIP Missense_Mutation p.R124S 0.62 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 6 155776979 155776979 C A NOX3 5'UTR 0.55 TCGA-BA-6869-01 6 160668217 160668217 T G SLC22A2 Missense_Mutation p.Q319P 0.65 deleterious(0.03) possibly_damaging(0.864) TCGA-BA-6869-01 6 167587435 167587435 G T TCP10L2 Silent p.A113A 0.19 TCGA-BA-6869-01 6 24473885 24473885 T A GPLD1 Missense_Mutation p.H151L 0.60 deleterious(0.01) possibly_damaging(0.762) TCGA-BA-6869-01 6 25830751 25830751 C T SLC17A1 Splice_Site p.X12_splice 0.47 TCGA-BA-6869-01 6 26197203 26197203 C A HIST1H3D Silent p.A92A 0.23 TCGA-BA-6869-01 6 26393416 26393416 G A BTN2A2 3'UTR 0.26 TCGA-BA-6869-01 6 26431630 26431630 C A BTN2A3P RNA 0.47 TCGA-BA-6869-01 6 27368084 27368084 G C ZNF391 5'UTR 0.47 TCGA-BA-6869-01 6 27799111 27799111 G T HIST1H4K Missense_Mutation p.N65K 0.14 deleterious(0) benign(0.345) TCGA-BA-6869-01 6 27835170 27835170 C T HIST1H1B Silent p.L46L 0.22 TCGA-BA-6869-01 6 29394860 29394860 C A OR11A1 Missense_Mutation p.G187C 0.58 deleterious(0) possibly_damaging(0.781) TCGA-BA-6869-01 6 31846788 31846788 G T SLC44A4 5'Flank 0.67 TCGA-BA-6869-01 6 38905924 38905924 C A DNAH8 Missense_Mutation p.T3696K 0.67 possibly_damaging(0.856) TCGA-BA-6869-01 6 39864638 39864638 A T DAAM2 Missense_Mutation p.M798L 0.69 tolerated(1) benign(0.001) TCGA-BA-6869-01 6 43170895 43170895 A G CUL9 Missense_Mutation p.N1268D 0.45 deleterious(0) benign(0.217) TCGA-BA-6869-01 6 55443753 55443753 G T HMGCLL1 Missense_Mutation p.P34H 0.62 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-BA-6869-01 6 69666697 69666697 C A BAI3 Nonsense_Mutation p.C507* 0.56 TCGA-BA-6869-01 6 85446515 85446515 G T TBX18 Missense_Mutation p.P571H 0.68 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-BA-6869-01 6 97246760 97246760 A G GPR63 Missense_Mutation p.I283T 0.68 tolerated(0.07) benign(0.284) TCGA-BA-6869-01 7 105111200 105111200 C A PUS7 Nonsense_Mutation p.E445* 0.38 TCGA-BA-6869-01 7 117267811 117267811 G T CFTR Missense_Mutation p.S1235I 0.19 deleterious(0.05) benign(0.017) TCGA-BA-6869-01 7 117432538 117432538 G T CTTNBP2 Silent p.R238R 0.23 TCGA-BA-6869-01 7 119915355 119915355 G T KCND2 Missense_Mutation p.E223D 0.42 tolerated(0.35) benign(0.049) TCGA-BA-6869-01 7 126173021 126173021 G T GRM8 Silent p.A805A 0.42 TCGA-BA-6869-01 7 127670623 127670624 - G LRRC4 Frame_Shift_Ins p.L24Pfs*31 0.27 TCGA-BA-6869-01 7 133502223 133502223 A G EXOC4 Missense_Mutation p.T554A 0.41 tolerated(1) benign(0) TCGA-BA-6869-01 7 140301270 140301270 A C DENND2A Missense_Mutation p.S310A 0.29 tolerated(0.07) benign(0.08) TCGA-BA-6869-01 7 141727480 141727480 C T MGAM Missense_Mutation p.T389I 0.30 deleterious(0) possibly_damaging(0.735) TCGA-BA-6869-01 7 142001214 142001214 G C TRBV2 Missense_Mutation p.K69N 0.29 TCGA-BA-6869-01 7 142723861 142723861 A T OR9A2 Missense_Mutation p.V120E 0.32 deleterious(0.01) probably_damaging(0.912) TCGA-BA-6869-01 7 143141256 143141256 C A TAS2R60 Silent p.P237P 0.34 TCGA-BA-6869-01 7 146741075 146741075 G C CNTNAP2 Missense_Mutation p.R160P 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 7 14722240 14722240 G T DGKB Missense_Mutation p.H325N 0.30 tolerated(0.1) benign(0.119) TCGA-BA-6869-01 7 150644574 150644574 G A KCNH2 Silent p.F998F 0.29 TCGA-BA-6869-01 7 154684051 154684051 C G DPP6 Missense_Mutation p.P820R 0.36 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 7 155255140 155255140 G T EN2 Nonsense_Mutation p.E254* 0.22 TCGA-BA-6869-01 7 158718989 158718989 A T WDR60 Missense_Mutation p.E790V 0.33 deleterious(0) possibly_damaging(0.788) TCGA-BA-6869-01 7 18067285 18067285 A T PRPS1L1 Missense_Mutation p.C41S 0.32 tolerated(1) benign(0) TCGA-BA-6869-01 7 1937853 1937853 C T MAD1L1 Missense_Mutation p.D661N 0.31 deleterious(0) probably_damaging(0.998) TCGA-BA-6869-01 7 30706845 30706845 T C CRHR2 Missense_Mutation p.K132R 0.21 tolerated(0.27) possibly_damaging(0.46) TCGA-BA-6869-01 7 31683113 31683113 C T CCDC129 Missense_Mutation p.T736I 0.33 tolerated(1) benign(0.007) TCGA-BA-6869-01 7 32209472 32209472 C A PDE1C Missense_Mutation p.R78L 0.35 tolerated(0.17) probably_damaging(0.987) TCGA-BA-6869-01 7 34889223 34889223 G A NPSR1 Intron 0.32 TCGA-BA-6869-01 7 35129971 35129971 T C DPY19L2P1 RNA 0.29 TCGA-BA-6869-01 7 37903952 37903952 G A NME8 Missense_Mutation p.E153K 0.34 tolerated(0.47) benign(0.14) TCGA-BA-6869-01 7 45697343 45697343 C A ADCY1 Missense_Mutation p.T389N 0.23 deleterious(0) benign(0.326) TCGA-BA-6869-01 7 47333420 47333420 T C TNS3 Missense_Mutation p.D1228G 0.36 deleterious(0) probably_damaging(0.997) TCGA-BA-6869-01 7 47408232 47408232 C T TNS3 Missense_Mutation p.G671R 0.35 tolerated(0.43) benign(0.028) TCGA-BA-6869-01 7 47894539 47894539 C G PKD1L1 Missense_Mutation p.Q1600H 0.33 tolerated(0.15) benign(0.13) TCGA-BA-6869-01 7 48285513 48285513 C A ABCA13 Silent p.V515V 0.27 TCGA-BA-6869-01 7 48318403 48318403 A T ABCA13 Missense_Mutation p.T2538S 0.28 benign(0.05) TCGA-BA-6869-01 7 50129302 50129302 C G ZPBP Missense_Mutation p.G44A 0.43 tolerated(0.05) benign(0.012) TCGA-BA-6869-01 7 72657254 72657254 A T GTF2IRD2P1 RNA 0.36 TCGA-BA-6869-01 7 74113421 74113421 C G GTF2I Missense_Mutation p.C123W 0.21 deleterious(0) probably_damaging(0.933) TCGA-BA-6869-01 7 74146978 74146978 G T GTF2I Nonsense_Mutation p.E427* 0.28 TCGA-BA-6869-01 7 77569410 77569410 G A PHTF2 Missense_Mutation p.G477S 0.25 tolerated(0.09) probably_damaging(0.953) TCGA-BA-6869-01 7 82538271 82538271 C A PCLO Missense_Mutation p.L4453F 0.26 unknown(0) TCGA-BA-6869-01 7 90419960 90419960 C T CDK14 Silent p.I161I 0.31 TCGA-BA-6869-01 7 94183816 94183816 A G CASD1 Missense_Mutation p.R686G 0.29 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 7 94539367 94539367 G T PPP1R9A 5'UTR 0.23 TCGA-BA-6869-01 7 94740690 94740690 G T PPP1R9A Silent p.V505V 0.33 TCGA-BA-6869-01 8 100523713 100523713 A T VPS13B Missense_Mutation p.T1561S 0.34 tolerated(0.31) possibly_damaging(0.522) TCGA-BA-6869-01 8 104898351 104898351 C T RIMS2 Silent p.R508R 0.35 TCGA-BA-6869-01 8 104922385 104922385 G C RIMS2 Missense_Mutation p.D550H 0.25 deleterious_low_confidence(0) benign(0.393) TCGA-BA-6869-01 8 10583781 10583781 C A SOX7 Missense_Mutation p.V264L 0.40 tolerated(0.28) benign(0.348) TCGA-BA-6869-01 8 113267587 113267587 G T CSMD3 Nonsense_Mutation p.S3311* 0.35 TCGA-BA-6869-01 8 113668416 113668416 G T CSMD3 Missense_Mutation p.R991S 0.26 deleterious(0.05) probably_damaging(1) TCGA-BA-6869-01 8 117954796 117954796 G A AARD Splice_Site p.X109_splice 0.33 TCGA-BA-6869-01 8 124978246 124978246 G A FER1L6 Splice_Site p.X66_splice 0.21 TCGA-BA-6869-01 8 12957730 12957730 C T DLC1 Missense_Mutation p.E706K 0.39 tolerated(0.13) benign(0.184) TCGA-BA-6869-01 8 133175730 133175730 A T KCNQ3 Missense_Mutation p.L416Q 0.31 tolerated(0.28) benign(0.017) TCGA-BA-6869-01 8 139263091 139263091 A G FAM135B Silent p.L179L 0.38 TCGA-BA-6869-01 8 139833498 139833498 C A COL22A1 Missense_Mutation p.V376F 0.31 unknown(0) TCGA-BA-6869-01 8 19681415 19681415 T - INTS10 Frame_Shift_Del p.S233Afs*9 0.32 TCGA-BA-6869-01 8 2820892 2820894 CGG - CSMD1 In_Frame_Del p.P3102del 0.18 TCGA-BA-6869-01 8 2820916 2820916 G T CSMD1 Silent p.A3094A 0.34 TCGA-BA-6869-01 8 30210561 30210562 - A TUBBP1 RNA 0.25 TCGA-BA-6869-01 8 35406851 35406851 G C UNC5D Missense_Mutation p.A49P 0.23 tolerated(0.38) benign(0.05) TCGA-BA-6869-01 8 36776389 36776389 G A KCNU1 Missense_Mutation p.R857Q 0.17 tolerated(0.14) benign(0.011) TCGA-BA-6869-01 8 38095108 38095108 C G DDHD2 Missense_Mutation p.S155C 0.30 deleterious(0.01) possibly_damaging(0.806) TCGA-BA-6869-01 8 52287228 52287228 A G PXDNL Silent p.P1207P 0.23 TCGA-BA-6869-01 8 52732859 52732859 C T PCMTD1 3'UTR 0.44 TCGA-BA-6869-01 8 55533949 55533950 - G RP1 Frame_Shift_Ins p.V142Gfs*87 0.33 TCGA-BA-6869-01 8 72182001 72182001 C A EYA1 Missense_Mutation p.G342W 0.26 deleterious(0.02) possibly_damaging(0.77) TCGA-BA-6869-01 8 72229917 72229917 C G EYA1 Missense_Mutation p.L142F 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-BA-6869-01 8 72756070 72756070 C T MSC Missense_Mutation p.R115H 0.25 deleterious(0) probably_damaging(0.996) TCGA-BA-6869-01 8 72951141 72951141 T A TRPA1 Missense_Mutation p.I752F 0.32 tolerated(0.44) possibly_damaging(0.548) TCGA-BA-6869-01 8 7717939 7717939 G T SPAG11A Intron 0.20 TCGA-BA-6869-01 8 80976829 80976829 C A TPD52 Splice_Site p.X47_splice 0.33 TCGA-BA-6869-01 8 87111182 87111182 C A ATP6V0D2 5'UTR 0.25 TCGA-BA-6869-01 9 101778282 101778282 G T COL15A1 Missense_Mutation p.A510S 0.30 tolerated_low_confidence(0.37) benign(0.001) TCGA-BA-6869-01 9 103204596 103204596 C A MSANTD3 Missense_Mutation p.P126T 0.30 tolerated(0.4) probably_damaging(0.937) TCGA-BA-6869-01 9 109691071 109691071 A G ZNF462 Silent p.E1626E 0.26 TCGA-BA-6869-01 9 112898559 112898559 T G PALM2-AKAP2 Silent p.P245P 0.28 TCGA-BA-6869-01 9 112899252 112899252 G T PALM2-AKAP2 Silent p.P476P 0.29 TCGA-BA-6869-01 9 119202971 119202971 C A ASTN2 Silent p.L1182L 0.27 TCGA-BA-6869-01 9 120470943 120470943 C T TLR4 Silent p.L66L 0.28 TCGA-BA-6869-01 9 125424532 125424532 G T OR1L1 Missense_Mutation p.D180Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-BA-6869-01 9 131222821 131222821 C - ODF2 Intron 0.23 TCGA-BA-6869-01 9 18474230 18474230 C A ADAMTSL1 5'UTR 0.49 TCGA-BA-6869-01 9 34613727 34613727 T A DCTN3 3'UTR 0.14 TCGA-BA-6869-01 9 35107838 35107838 C T FAM214B Missense_Mutation p.C145Y 0.35 tolerated_low_confidence(0.14) benign(0) TCGA-BA-6869-01 9 35556330 35556330 G A RUSC2 Silent p.L956L 0.36 TCGA-BA-6869-01 9 43625328 43625328 C A SPATA31A6 Missense_Mutation p.R1120M 0.30 tolerated(0.07) benign(0.028) TCGA-BA-6869-01 9 43626575 43626575 G T SPATA31A6 Silent p.P704P 0.26 TCGA-BA-6869-01 9 90502039 90502039 C T SPATA31E1 Silent p.A879A 0.39 TCGA-BA-6869-01 9 99694506 99694506 G A NUTM2G Silent p.G173G 0.17 TCGA-BA-6869-01 X 102332651 102332651 A T NXF3 Missense_Mutation p.L492H 0.63 deleterious(0) probably_damaging(1) TCGA-BA-6869-01 X 104464879 104464879 G A TEX13A Missense_Mutation p.T68I 0.59 deleterious(0.02) benign(0.044) TCGA-BA-6869-01 X 129184758 129184758 G T BCORL1 Missense_Mutation p.S1562I 0.59 probably_damaging(0.998) TCGA-BA-6869-01 X 134856764 134856764 A T CT45A1 Missense_Mutation p.H180L 0.04 tolerated(0.13) benign(0.003) TCGA-BA-6869-01 X 136112905 136112905 C T GPR101 Missense_Mutation p.S310N 0.59 tolerated_low_confidence(0.21) benign(0.005) TCGA-BA-6869-01 X 138644286 138644286 C A F9 3'UTR 0.54 TCGA-BA-6869-01 X 140993368 140993368 G T MAGEC1 Missense_Mutation p.G60W 0.57 tolerated_low_confidence(0.09) probably_damaging(0.965) TCGA-BA-6869-01 X 14627215 14627215 G C GLRA2 Missense_Mutation p.W273S 0.63 deleterious(0) probably_damaging(0.983) TCGA-BA-6869-01 X 153689091 153689091 G A PLXNA3 Missense_Mutation p.E190K 0.60 tolerated(0.29) possibly_damaging(0.543) TCGA-BA-6869-01 X 17165607 17165607 C T REPS2 3'UTR 0.64 TCGA-BA-6869-01 X 17739579 17739579 G T NHS Nonsense_Mutation p.E291* 0.68 TCGA-BA-6869-01 X 32459328 32459328 C G DMD Missense_Mutation p.G1297A 0.60 benign(0) TCGA-BA-6869-01 X 34962223 34962223 G T FAM47B Silent p.P425P 0.76 TCGA-BA-6869-01 X 50163498 50163498 G T DGKK RNA 0.65 TCGA-BA-6869-01 X 54957428 54957428 G T TRO Missense_Mutation p.G1424V 0.45 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-BA-6869-01 X 63410293 63410293 C A AMER1 Missense_Mutation p.W958C 0.73 tolerated(0.06) benign(0.038) TCGA-BA-6869-01 X 73041720 73041720 G A XIST RNA 0.65 TCGA-BA-6869-01 X 73962264 73962265 - A KIAA2022 Frame_Shift_Ins p.K710* 0.41 TCGA-BA-6869-01 X 79932626 79932626 T A BRWD3 Missense_Mutation p.T1631S 0.55 tolerated_low_confidence(0.45) benign(0.039) TCGA-BA-6869-01 X 90690743 90690743 G T PABPC5 Missense_Mutation p.R56L 0.62 deleterious(0) benign(0.284) TCGA-BA-6869-01 X 91132611 91132611 G C PCDH11X Missense_Mutation p.D458H 0.65 deleterious(0) probably_damaging(1) TCGA-BA-6870-01 10 1779424 1779424 C T ADARB2 5'UTR 0.20 TCGA-BA-6870-01 11 102585393 102585393 G A MMP8 Missense_Mutation p.P362S 0.05 deleterious(0.01) probably_damaging(1) TCGA-BA-6870-01 11 55703033 55703033 T C OR5I1 Missense_Mutation p.I282V 0.29 tolerated(1) benign(0.13) TCGA-BA-6870-01 11 60264874 60264874 C A MS4A12 Missense_Mutation p.P28H 0.23 tolerated(0.11) benign(0.186) TCGA-BA-6870-01 11 6048343 6048344 - A OR56A1 Frame_Shift_Ins p.N198* 0.11 TCGA-BA-6870-01 11 66617874 66617874 G A PC Silent p.Y845Y 0.09 TCGA-BA-6870-01 12 130847537 130847537 G A PIWIL1 Silent p.A681A 0.28 TCGA-BA-6870-01 12 3935380 3935380 G A PARP11 Silent p.L96L 0.13 TCGA-BA-6870-01 12 41966610 41966610 G A PDZRN4 Missense_Mutation p.E677K 0.15 deleterious(0) probably_damaging(0.993) TCGA-BA-6870-01 12 49434544 49434544 G A KMT2D Nonsense_Mutation p.Q2337* 0.30 TCGA-BA-6870-01 12 52914155 52914155 C A KRT5 5'UTR 0.36 TCGA-BA-6870-01 12 54936370 54936370 G A NCKAP1L Silent p.E1095E 0.11 TCGA-BA-6870-01 12 59266402 59266402 T G LRIG3 Missense_Mutation p.L1104F 0.13 tolerated_low_confidence(0.52) benign(0.002) TCGA-BA-6870-01 12 64041067 64041067 C T DPY19L2 Missense_Mutation p.V223I 0.11 tolerated(0.19) benign(0.441) TCGA-BA-6870-01 12 7864205 7864205 G T DPPA3 Silent p.G13G 0.06 TCGA-BA-6870-01 13 27255411 27255411 C T WASF3 Missense_Mutation p.P313S 0.24 tolerated(0.76) benign(0.001) TCGA-BA-6870-01 13 32936727 32936727 A T BRCA2 Nonsense_Mutation p.R2625* 0.26 TCGA-BA-6870-01 14 65239589 65239589 G A SPTB Silent p.I1754I 0.35 TCGA-BA-6870-01 14 74766262 74766262 G C ABCD4 Missense_Mutation p.L92V 0.22 tolerated(0.4) benign(0.021) TCGA-BA-6870-01 14 79181301 79181301 G C NRXN3 Missense_Mutation p.K248N 0.21 tolerated(0.1) probably_damaging(0.984) TCGA-BA-6870-01 15 41797201 41797201 C T LTK Missense_Mutation p.G663R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-BA-6870-01 15 72023537 72023537 G A THSD4 Silent p.V537V 0.15 TCGA-BA-6870-01 15 72023538 72023538 C T THSD4 Missense_Mutation p.P538S 0.17 tolerated(0.08) benign(0.007) TCGA-BA-6870-01 15 72511446 72511446 G T PKM 5'UTR 0.18 TCGA-BA-6870-01 16 20998737 20998737 C T DNAH3 Missense_Mutation p.E2306K 0.14 deleterious(0) probably_damaging(1) TCGA-BA-6870-01 16 23570829 23570829 C T UBFD1 Silent p.L132L 0.16 TCGA-BA-6870-01 16 27483198 27483198 T C GTF3C1 Missense_Mutation p.K1466R 0.22 tolerated(0.32) benign(0.024) TCGA-BA-6870-01 16 49670697 49670697 G T ZNF423 Missense_Mutation p.T789N 0.11 deleterious(0.01) benign(0.405) TCGA-BA-6870-01 16 72110554 72110554 C T HPR Silent p.I207I 0.11 TCGA-BA-6870-01 17 10584496 10584496 C T SCO1 Silent p.R282R 0.37 TCGA-BA-6870-01 17 12016562 12016575 CCAATATTCTTCTG - MAP2K4 Frame_Shift_Del p.S233* 0.22 TCGA-BA-6870-01 17 7577556 7577556 C T TP53 Missense_Mutation p.C242Y 0.35 deleterious(0) probably_damaging(1) TCGA-BA-6870-01 19 12126445 12126446 - A ZNF433 Frame_Shift_Ins p.E413* 0.21 TCGA-BA-6870-01 19 2041985 2041985 C G MKNK2 Missense_Mutation p.E267Q 0.25 tolerated(0.18) probably_damaging(0.933) TCGA-BA-6870-01 19 2987759 2987759 G A TLE6 Missense_Mutation p.G199E 0.08 tolerated(0.28) probably_damaging(0.999) TCGA-BA-6870-01 19 34263477 34263477 G A CHST8 Missense_Mutation p.E262K 0.07 deleterious(0) probably_damaging(0.999) TCGA-BA-6870-01 19 4418037 4418037 A G CHAF1A Silent p.K327K 0.07 TCGA-BA-6870-01 19 48989041 48989041 C A LMTK3 Missense_Mutation p.V1487L 0.29 unknown(0) TCGA-BA-6870-01 19 54170012 54170012 T A MIR512-1 RNA 0.38 TCGA-BA-6870-01 1 116280931 116280931 A C CASQ2 Missense_Mutation p.I149S 0.27 deleterious(0) probably_damaging(0.943) TCGA-BA-6870-01 1 120502074 120502074 T - NOTCH2 Frame_Shift_Del p.H656Lfs*46 0.15 TCGA-BA-6870-01 1 151259824 151259824 C T ZNF687 Missense_Mutation p.P353S 0.29 tolerated(1) benign(0.002) TCGA-BA-6870-01 1 155034393 155034393 A G ADAM15 Missense_Mutation p.D789G 0.08 tolerated(0.16) benign(0.032) TCGA-BA-6870-01 1 156618415 156618415 G A BCAN Silent p.A275A 0.15 TCGA-BA-6870-01 1 196658702 196658702 C T CFH Missense_Mutation p.H373Y 0.07 tolerated(0.47) benign(0.002) TCGA-BA-6870-01 1 229773396 229773396 C A URB2 Silent p.L1012L 0.33 TCGA-BA-6870-01 1 247695697 247695697 C G OR2C3 Silent p.S39S 0.17 TCGA-BA-6870-01 1 35453123 35453123 A C ZMYM6 Missense_Mutation p.I1187S 0.15 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BA-6870-01 1 40703347 40703347 A G RLF Silent p.K991K 0.23 TCGA-BA-6870-01 1 43305715 43305715 A T ERMAP Missense_Mutation p.S217C 0.26 tolerated(0.12) benign(0.371) TCGA-BA-6870-01 1 47609524 47609535 CTACAGCCTGAC - CYP4A22 In_Frame_Del p.Y243_T246del 0.08 TCGA-BA-6870-01 1 70758091 70758091 T G ANKRD13C Missense_Mutation p.I399L 0.22 tolerated(0.59) benign(0.001) TCGA-BA-6870-01 20 10653370 10653370 C G JAG1 Silent p.L122L 0.21 TCGA-BA-6870-01 20 21314185 21314185 G A XRN2 Missense_Mutation p.D288N 0.11 tolerated(0.16) benign(0.049) TCGA-BA-6870-01 20 21314186 21314186 A T XRN2 Missense_Mutation p.D288V 0.11 deleterious(0.02) possibly_damaging(0.564) TCGA-BA-6870-01 20 31587923 31587923 C G SUN5 Missense_Mutation p.Q99H 0.13 tolerated(0.22) benign(0.01) TCGA-BA-6870-01 20 41101056 41101056 G A PTPRT Nonsense_Mutation p.Q434* 0.44 TCGA-BA-6870-01 20 62871243 62871243 G T MYT1 Missense_Mutation p.R1075L 0.23 probably_damaging(0.998) TCGA-BA-6870-01 21 37623566 37623566 G A DOPEY2 Missense_Mutation p.R1702H 0.15 tolerated(0.12) benign(0.008) TCGA-BA-6870-01 21 44153465 44153465 G A PDE9A Splice_Site p.X166_splice 0.26 TCGA-BA-6870-01 2 107002803 107002803 G T PLGLA RNA 0.13 TCGA-BA-6870-01 2 112732906 112732906 T C MERTK Missense_Mutation p.I334T 0.25 tolerated(0.72) benign(0.01) TCGA-BA-6870-01 2 128390861 128390861 C A MYO7B Missense_Mutation p.Q1786K 0.11 tolerated(0.29) benign(0.122) TCGA-BA-6870-01 2 141457953 141457953 T C LRP1B Missense_Mutation p.K2222R 0.20 benign(0.292) TCGA-BA-6870-01 2 26415267 26415267 T C HADHA Missense_Mutation p.I638V 0.23 tolerated(1) benign(0.004) TCGA-BA-6870-01 2 55573405 55573405 C T CCDC88A Missense_Mutation p.R316Q 0.23 deleterious(0) probably_damaging(0.991) TCGA-BA-6870-01 2 71575966 71575966 C T ZNF638 5'UTR 0.10 TCGA-BA-6870-01 3 136665013 136665013 C T NCK1 Missense_Mutation p.S272L 0.14 tolerated(0.14) benign(0.434) TCGA-BA-6870-01 3 95374105 95374105 G A MTHFD2P1 RNA 0.26 TCGA-BA-6870-01 4 115997541 115997541 C T NDST4 Missense_Mutation p.E218K 0.22 tolerated(0.12) benign(0.038) TCGA-BA-6870-01 4 141591978 141591978 T C TBC1D9 Missense_Mutation p.R388G 0.28 deleterious(0) probably_damaging(0.989) TCGA-BA-6870-01 4 184596347 184596347 G A TRAPPC11 Missense_Mutation p.A231T 0.10 deleterious(0.01) possibly_damaging(0.483) TCGA-BA-6870-01 4 20706289 20706289 A G PACRGL Missense_Mutation p.Y20C 0.22 tolerated_low_confidence(0.39) benign(0.001) TCGA-BA-6870-01 5 133477960 133477961 - GG TCF7 Frame_Shift_Ins p.K242Gfs*12 0.10 TCGA-BA-6870-01 5 140202875 140202875 T C PCDHA5 Silent p.S505S 0.22 TCGA-BA-6870-01 5 140588971 140588971 C A PCDHB12 Silent p.I164I 0.14 TCGA-BA-6870-01 5 140755399 140755399 G A PCDHGA6 Silent p.E583E 0.27 TCGA-BA-6870-01 5 169506012 169506012 G A DOCK2 Silent p.P1676P 0.10 TCGA-BA-6870-01 5 26915954 26915954 T C CDH9 Missense_Mutation p.I103V 0.38 deleterious(0.01) probably_damaging(0.931) TCGA-BA-6870-01 5 31302316 31302316 G C CDH6 Missense_Mutation p.E304Q 0.09 tolerated(0.2) benign(0.297) TCGA-BA-6870-01 5 42718796 42718796 A G GHR Missense_Mutation p.E396G 0.18 deleterious(0.02) possibly_damaging(0.845) TCGA-BA-6870-01 5 54662572 54662572 A G SKIV2L2 Missense_Mutation p.N560S 0.33 deleterious(0) possibly_damaging(0.725) TCGA-BA-6870-01 5 7859654 7859654 T C FASTKD3 Splice_Site p.X629_splice 0.25 TCGA-BA-6870-01 5 79032587 79032587 C G CMYA5 Missense_Mutation p.P2667A 0.16 benign(0.001) TCGA-BA-6870-01 6 131926435 131926435 T C MED23 Missense_Mutation p.I520V 0.17 tolerated(0.17) benign(0.001) TCGA-BA-6870-01 6 31605291 31605291 A G PRRC2A Silent p.E2134E 0.21 TCGA-BA-6870-01 6 31610753 31610754 - A BAG6 Frame_Shift_Ins p.M602Ifs*3 0.36 TCGA-BA-6870-01 6 41166046 41166046 C A TREML2 Missense_Mutation p.R59S 0.23 deleterious(0) probably_damaging(0.966) TCGA-BA-6870-01 6 72003291 72003291 A G OGFRL1 Missense_Mutation p.N126S 0.17 deleterious(0.02) possibly_damaging(0.902) TCGA-BA-6870-01 6 74229664 74229664 T C EEF1A1 Missense_Mutation p.Y29C 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BA-6870-01 7 100198322 100198322 A G FBXO24 Missense_Mutation p.M553V 0.05 tolerated_low_confidence(0.38) benign(0) TCGA-BA-6870-01 7 100276221 100276224 GAAG - GNB2 Frame_Shift_Del p.K301Afs*14 0.27 TCGA-BA-6870-01 7 117450836 117450836 C T CTTNBP2 Missense_Mutation p.E133K 0.12 deleterious(0.03) probably_damaging(1) TCGA-BA-6870-01 7 134221441 134221441 C A AKR1B10 Missense_Mutation p.L157I 0.19 tolerated(1) benign(0.21) TCGA-BA-6870-01 7 146829576 146829576 G T CNTNAP2 Missense_Mutation p.K441N 0.30 tolerated(0.1) benign(0.411) TCGA-BA-6870-01 7 154738224 154738225 - T PAXIP1 Frame_Shift_Ins p.I1044Nfs*21 0.21 TCGA-BA-6870-01 7 66453484 66453484 T C SBDS Silent p.V209V 0.20 TCGA-BA-6870-01 7 94037520 94037520 G T COL1A2 Missense_Mutation p.R222I 0.07 unknown(0) TCGA-BA-6870-01 8 109462150 109462150 A G EMC2 Missense_Mutation p.K47E 0.13 deleterious(0) possibly_damaging(0.703) TCGA-BA-6870-01 8 121468867 121468867 C T MTBP Missense_Mutation p.S235L 0.08 tolerated(0.73) benign(0.008) TCGA-BA-6870-01 8 82355503 82355503 G A PMP2 3'UTR 0.21 TCGA-BA-6870-01 9 1057243 1057243 T C DMRT2 Silent p.P552P 0.26 TCGA-BA-6870-01 9 125618124 125618124 C T RC3H2 Missense_Mutation p.E830K 0.12 tolerated(0.43) benign(0.428) TCGA-BA-6870-01 9 135276927 135276927 T C TTF1 Missense_Mutation p.M428V 0.47 tolerated(0.32) benign(0) TCGA-BA-6870-01 X 104728331 104728331 C A IL1RAPL2 Missense_Mutation p.P242T 0.17 tolerated(0.41) benign(0.439) TCGA-BA-6870-01 X 104728332 104728332 C A IL1RAPL2 Missense_Mutation p.P242Q 0.17 tolerated(0.31) possibly_damaging(0.842) TCGA-BA-6870-01 X 120182678 120182678 C A GLUD2 Silent p.I380I 0.22 TCGA-BA-6870-01 X 123200245 123200245 C A STAG2 Missense_Mutation p.L742I 0.11 deleterious(0.01) benign(0.413) TCGA-BA-6870-01 X 138820082 138820084 CTT - ATP11C In_Frame_Del p.R1096del 0.10 TCGA-BA-6870-01 X 151092124 151092124 G A MAGEA4 5'UTR 0.29 TCGA-BA-6870-01 X 153223611 153223611 A T HCFC1 Silent p.P631P 0.21 TCGA-BA-6870-01 X 54496604 54496604 C A FGD1 Missense_Mutation p.A316S 0.32 tolerated(0.36) benign(0.003) TCGA-BA-6870-01 X 96213115 96213115 G T DIAPH2 Nonsense_Mutation p.E635* 0.14 TCGA-BA-6871-01 10 102822342 102822342 C G KAZALD1 5'UTR 0.36 TCGA-BA-6871-01 10 112266854 112266854 G - DUSP5 Frame_Shift_Del p.E231Kfs*16 0.48 TCGA-BA-6871-01 10 114044408 114044408 C T TECTB Silent p.H64H 0.65 TCGA-BA-6871-01 10 11994141 11994141 C A UPF2 Missense_Mutation p.K986N 0.51 tolerated(0.07) benign(0.396) TCGA-BA-6871-01 10 11994167 11994167 C T UPF2 Missense_Mutation p.D978N 0.53 deleterious(0) probably_damaging(0.995) TCGA-BA-6871-01 10 124742535 124742535 G A PSTK Missense_Mutation p.R168Q 0.46 deleterious(0) probably_damaging(0.962) TCGA-BA-6871-01 10 125426287 125426287 G A GPR26 Missense_Mutation p.D122N 0.30 tolerated(0.17) possibly_damaging(0.493) TCGA-BA-6871-01 10 17113568 17113568 G A CUBN Missense_Mutation p.R828C 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-BA-6871-01 10 33619748 33619748 G A NRP1 Missense_Mutation p.H46Y 0.45 tolerated(0.12) benign(0.003) TCGA-BA-6871-01 10 37451602 37451602 C G ANKRD30A Missense_Mutation p.F586L 0.42 tolerated(1) possibly_damaging(0.483) TCGA-BA-6871-01 10 60559980 60559980 A G BICC1 Missense_Mutation p.I584M 0.68 tolerated(0.24) benign(0.008) TCGA-BA-6871-01 10 98469731 98469731 C T PIK3AP1 Missense_Mutation p.R8K 0.19 tolerated(0.58) benign(0.018) TCGA-BA-6871-01 11 103908425 103908425 G A DDI1 Missense_Mutation p.G292E 0.37 deleterious(0) probably_damaging(1) TCGA-BA-6871-01 11 111571713 111571713 A G SIK2 Silent p.E194E 0.22 TCGA-BA-6871-01 11 118260439 118260439 G A UBE4A Splice_Site p.X870_splice 0.22 TCGA-BA-6871-01 11 118468432 118468432 G A ARCN1 Missense_Mutation p.G418S 0.15 tolerated(0.14) possibly_damaging(0.806) TCGA-BA-6871-01 11 122724650 122724650 G T CRTAM Splice_Site p.X116_splice 0.22 TCGA-BA-6871-01 11 134095034 134095034 C T VPS26B Silent p.F6F 0.40 TCGA-BA-6871-01 11 47444246 47444246 G C PSMC3 Missense_Mutation p.Q255E 0.20 tolerated(0.41) probably_damaging(0.928) TCGA-BA-6871-01 11 55905136 55905136 C T OR8J3 Missense_Mutation p.C20Y 0.27 tolerated(0.06) benign(0.009) TCGA-BA-6871-01 11 55927085 55927085 C A OR8K5 Missense_Mutation p.A237S 0.27 deleterious_low_confidence(0.01) benign(0.303) TCGA-BA-6871-01 11 56230773 56230773 G A OR5M9 Silent p.I35I 0.36 TCGA-BA-6871-01 11 66359037 66359037 C G CCDC87 Missense_Mutation p.D484H 0.25 deleterious(0.05) benign(0.011) TCGA-BA-6871-01 11 68201226 68201226 G A LRP5 Missense_Mutation p.R1307Q 0.48 tolerated(0.29) benign(0.108) TCGA-BA-6871-01 12 1250924 1250924 G T ERC1 Nonsense_Mutation p.E570* 0.05 TCGA-BA-6871-01 12 130921646 130921646 G C RIMBP2 Nonsense_Mutation p.S599* 0.19 TCGA-BA-6871-01 12 31253973 31253973 C T DDX11 Missense_Mutation p.P654L 0.17 deleterious(0) probably_damaging(1) TCGA-BA-6871-01 12 49441813 49441813 C T KMT2D Missense_Mutation p.E1391K 0.37 probably_damaging(0.998) TCGA-BA-6871-01 12 56743976 56743976 T A STAT2 Splice_Site p.X372_splice 0.25 TCGA-BA-6871-01 12 6639016 6639016 G C NCAPD2 Missense_Mutation p.M1243I 0.82 tolerated(0.09) benign(0.046) TCGA-BA-6871-01 12 80660353 80660353 G A OTOGL Missense_Mutation p.E774K 0.21 tolerated(0.52) benign(0.228) TCGA-BA-6871-01 13 35685031 35685031 G C NBEA Missense_Mutation p.V640L 0.30 deleterious(0) probably_damaging(0.92) TCGA-BA-6871-01 13 88330088 88330088 G A SLITRK5 Silent p.L815L 0.38 TCGA-BA-6871-01 13 98668033 98668033 G A IPO5 Missense_Mutation p.E849K 0.28 deleterious(0) probably_damaging(0.999) TCGA-BA-6871-01 14 22989438 22989438 G T TRAJ23 Nonsense_Mutation p.E16* 0.30 TCGA-BA-6871-01 14 23866199 23866199 C T MYH6 Missense_Mutation p.R714H 0.07 deleterious(0) possibly_damaging(0.846) TCGA-BA-6871-01 14 50092739 50092739 G A DNAAF2 Silent p.L679L 0.25 TCGA-BA-6871-01 14 63860550 63860550 G C PPP2R5E Silent p.L279L 0.31 TCGA-BA-6871-01 14 91948149 91948149 G A SMEK1 Missense_Mutation p.A229V 0.35 deleterious(0.03) benign(0.034) TCGA-BA-6871-01 15 25966813 25966813 C G ATP10A Missense_Mutation p.D452H 0.19 deleterious(0.04) benign(0.414) TCGA-BA-6871-01 15 28358347 28358347 A G HERC2 Missense_Mutation p.I4701T 0.19 benign(0.278) TCGA-BA-6871-01 15 57815716 57815716 G A CGNL1 Silent p.Q915Q 0.67 TCGA-BA-6871-01 16 10274118 10274118 G C GRIN2A Missense_Mutation p.L51V 0.15 tolerated(0.44) benign(0.001) TCGA-BA-6871-01 16 25268325 25268325 C G ZKSCAN2 Missense_Mutation p.E42Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-6871-01 16 57149418 57149418 C T CPNE2 Silent p.L131L 0.22 TCGA-BA-6871-01 16 57153158 57153158 G A CPNE2 Missense_Mutation p.D187N 0.24 tolerated(0.09) possibly_damaging(0.46) TCGA-BA-6871-01 17 16527489 16527489 C G ZNF624 Missense_Mutation p.L237F 0.23 tolerated(0.08) benign(0.002) TCGA-BA-6871-01 17 3181289 3181289 A C OR3A2 Missense_Mutation p.F314C 0.15 deleterious(0.02) benign(0.005) TCGA-BA-6871-01 17 5085147 5085147 C G ZNF594 Missense_Mutation p.R802T 0.26 deleterious_low_confidence(0) benign(0.227) TCGA-BA-6871-01 17 78858859 78858859 G C RPTOR Missense_Mutation p.E632Q 0.21 deleterious(0.03) possibly_damaging(0.894) TCGA-BA-6871-01 18 3456272 3456272 G C TGIF1 Intron 0.19 TCGA-BA-6871-01 18 42530340 42530340 G A SETBP1 Silent p.Q345Q 0.28 TCGA-BA-6871-01 19 10107155 10107155 A T COL5A3 Missense_Mutation p.V459D 0.25 unknown(0) TCGA-BA-6871-01 19 17942159 17942159 G T JAK3 Silent p.A952A 0.19 TCGA-BA-6871-01 19 18377335 18377335 G C KIAA1683 Missense_Mutation p.L339V 0.18 tolerated(0.52) benign(0.344) TCGA-BA-6871-01 19 37733511 37733511 A G ZNF383 Missense_Mutation p.S125G 0.35 tolerated(0.82) benign(0) TCGA-BA-6871-01 19 39860463 39860463 G A SAMD4B Missense_Mutation p.S122N 0.25 deleterious(0) possibly_damaging(0.809) TCGA-BA-6871-01 19 48800482 48800482 G A CCDC114 Silent p.F588F 0.42 TCGA-BA-6871-01 19 51273921 51273921 G A GPR32 Missense_Mutation p.D22N 0.42 tolerated(0.38) benign(0.008) TCGA-BA-6871-01 19 6743214 6743214 G C TRIP10 Missense_Mutation p.E119Q 0.33 deleterious(0.03) probably_damaging(0.956) TCGA-BA-6871-01 1 111957388 111957388 T C OVGP1 Missense_Mutation p.R579G 0.36 tolerated_low_confidence(0.32) benign(0.003) TCGA-BA-6871-01 1 113269325 113269325 C T FAM19A3 3'UTR 0.23 TCGA-BA-6871-01 1 119474283 119474283 G A TBX15 Silent p.F20F 0.38 TCGA-BA-6871-01 1 120927184 120927184 G C FCGR1B Missense_Mutation p.Q266E 0.28 tolerated_low_confidence(0.42) benign(0.018) TCGA-BA-6871-01 1 154987574 154987574 A C ZBTB7B Silent p.L180L 0.64 TCGA-BA-6871-01 1 169923234 169923234 C T KIFAP3 Missense_Mutation p.E731K 0.18 deleterious(0.01) benign(0.021) TCGA-BA-6871-01 1 173873022 173873022 A G SERPINC1 3'UTR 0.11 TCGA-BA-6871-01 1 200843070 200843070 C G GPR25 Missense_Mutation p.A302G 0.09 deleterious(0) probably_damaging(0.967) TCGA-BA-6871-01 1 215824103 215824103 C T USH2A Nonsense_Mutation p.W4725* 0.19 TCGA-BA-6871-01 1 215940058 215940058 G A USH2A Missense_Mutation p.P3671L 0.87 benign(0.234) TCGA-BA-6871-01 1 26161428 26161428 T C AUNIP 3'UTR 0.39 TCGA-BA-6871-01 1 26658052 26658052 G A AIM1L Silent p.G540G 0.36 TCGA-BA-6871-01 1 28864461 28864461 C A RCC1 Missense_Mutation p.S434Y 0.20 tolerated(0.06) benign(0.285) TCGA-BA-6871-01 1 29609426 29609426 C G PTPRU Missense_Mutation p.L703V 0.18 tolerated(0.29) probably_damaging(0.997) TCGA-BA-6871-01 1 34666533 34666533 C T C1orf94 Silent p.A390A 0.30 TCGA-BA-6871-01 1 38357097 38357097 T A INPP5B Missense_Mutation p.N188Y 0.34 deleterious(0.03) possibly_damaging(0.667) TCGA-BA-6871-01 1 38463526 38463526 C G FHL3 Missense_Mutation p.G173A 0.20 deleterious(0.01) probably_damaging(1) TCGA-BA-6871-01 1 55224719 55224719 C T PARS2 Missense_Mutation p.R39H 0.17 tolerated(0.07) benign(0.04) TCGA-BA-6871-01 1 67154866 67154866 G C SGIP1 Missense_Mutation p.V451L 0.33 tolerated(0.36) benign(0.003) TCGA-BA-6871-01 20 3311319 3311319 G T C20orf194 Missense_Mutation p.S358R 0.26 tolerated(0.13) benign(0.023) TCGA-BA-6871-01 20 44236737 44236737 G A WFDC9 3'UTR 0.27 TCGA-BA-6871-01 22 22892735 22892735 C G PRAME Silent p.L122L 0.16 TCGA-BA-6871-01 2 128394476 128394476 C A MYO7B Nonsense_Mutation p.C2079* 0.07 TCGA-BA-6871-01 2 138414381 138414381 C G THSD7B Missense_Mutation p.T1377R 0.14 tolerated(0.06) unknown(0) TCGA-BA-6871-01 2 141032089 141032089 G A LRP1B Missense_Mutation p.T4349M 0.33 possibly_damaging(0.791) TCGA-BA-6871-01 2 141116452 141116452 G A LRP1B Missense_Mutation p.S3732L 0.42 benign(0.003) TCGA-BA-6871-01 2 1460007 1460007 G C TPO Missense_Mutation p.D258H 0.18 deleterious(0) probably_damaging(0.988) TCGA-BA-6871-01 2 187712479 187712479 G A ZSWIM2 Missense_Mutation p.P70L 0.41 tolerated(1) benign(0.001) TCGA-BA-6871-01 2 208478045 208478045 T G METTL21A Missense_Mutation p.N128H 0.43 tolerated(0.07) probably_damaging(0.976) TCGA-BA-6871-01 2 226447438 226447438 C T NYAP2 Silent p.T435T 0.43 TCGA-BA-6871-01 2 233272041 233272041 A G ALPPL2 Missense_Mutation p.Q77R 0.33 deleterious(0.01) probably_damaging(0.917) TCGA-BA-6871-01 2 233410382 233410382 C G CHRNG Missense_Mutation p.P504A 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-6871-01 2 234202923 234202923 C T ATG16L1 Missense_Mutation p.A584V 0.33 deleterious(0.01) benign(0.169) TCGA-BA-6871-01 2 234591112 234591112 C G UGT1A7 Missense_Mutation p.L177V 0.36 deleterious(0.03) benign(0.34) TCGA-BA-6871-01 2 27677472 27677472 C T IFT172 Missense_Mutation p.E1143K 0.23 deleterious(0.01) benign(0.146) TCGA-BA-6871-01 2 3502653 3502653 A T ADI1 3'UTR 0.59 TCGA-BA-6871-01 2 73716878 73716878 G C ALMS1 Missense_Mutation p.D2597H 0.22 probably_damaging(0.999) TCGA-BA-6871-01 2 80085146 80085146 G A CTNNA2 Silent p.T102T 0.24 TCGA-BA-6871-01 2 86716520 86716520 C G KDM3A Silent p.V1131V 0.29 TCGA-BA-6871-01 3 121646672 121646672 G C SLC15A2 Missense_Mutation p.E398Q 0.26 tolerated(1) benign(0.04) TCGA-BA-6871-01 3 154022638 154022638 C A DHX36 Missense_Mutation p.L364F 0.11 deleterious(0) probably_damaging(0.998) TCGA-BA-6871-01 3 159997002 159997002 C G IFT80 Silent p.V605V 0.10 TCGA-BA-6871-01 3 160141353 160141353 C G SMC4 Missense_Mutation p.N720K 0.12 deleterious(0) benign(0.317) TCGA-BA-6871-01 3 164733816 164733817 - T SI Frame_Shift_Ins p.I1271Nfs*3 0.31 TCGA-BA-6871-01 3 164905937 164905937 G T SLITRK3 Silent p.P894P 0.42 TCGA-BA-6871-01 3 179052100 179052100 C G ZNF639 Missense_Mutation p.L450V 0.16 tolerated(0.14) probably_damaging(0.967) TCGA-BA-6871-01 3 183493712 183493712 C G YEATS2 Missense_Mutation p.S793C 0.11 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-BA-6871-01 3 184102418 184102418 G T CHRD Missense_Mutation p.D512Y 0.19 deleterious(0) probably_damaging(0.984) TCGA-BA-6871-01 3 196530019 196530019 G C PAK2 Silent p.L140L 0.11 TCGA-BA-6871-01 3 51317591 51317591 T C DOCK3 Missense_Mutation p.F960L 0.36 deleterious(0.02) benign(0.002) TCGA-BA-6871-01 3 57658127 57658127 T C DENND6A Silent p.E92E 0.74 TCGA-BA-6871-01 3 77600053 77600053 C G ROBO2 Missense_Mutation p.Q398E 0.31 tolerated(0.07) benign(0.149) TCGA-BA-6871-01 4 107156504 107156504 G T TBCK Missense_Mutation p.N457K 0.25 tolerated(0.42) benign(0.007) TCGA-BA-6871-01 4 114275313 114275313 C A ANK2 Missense_Mutation p.P1847T 0.23 possibly_damaging(0.783) TCGA-BA-6871-01 4 123270379 123270379 C T KIAA1109 Silent p.I4449I 0.25 TCGA-BA-6871-01 4 187535482 187535482 G A FAT1 Missense_Mutation p.T3031I 0.25 benign(0.021) TCGA-BA-6871-01 4 55594190 55594190 G C KIT Missense_Mutation p.L631F 0.07 tolerated(0.59) benign(0.083) TCGA-BA-6871-01 4 68385088 68385088 G A CENPC Missense_Mutation p.S155F 0.21 deleterious(0) probably_damaging(0.979) TCGA-BA-6871-01 4 81122461 81122461 A C PRDM8 Silent p.A79A 0.31 TCGA-BA-6871-01 4 81123227 81123227 G A PRDM8 Missense_Mutation p.G204D 0.31 tolerated_low_confidence(0.1) probably_damaging(0.959) TCGA-BA-6871-01 4 89744151 89744151 G C FAM13A Intron 0.24 TCGA-BA-6871-01 5 112238181 112238181 C T REEP5 Missense_Mutation p.D83N 0.23 deleterious(0) probably_damaging(1) TCGA-BA-6871-01 5 1253933 1253933 C A TERT Silent p.L1103L 0.09 TCGA-BA-6871-01 5 127595471 127595471 C T FBN2 Missense_Mutation p.M2805I 0.52 tolerated(0.12) benign(0.009) TCGA-BA-6871-01 5 143586683 143586683 C G KCTD16 Missense_Mutation p.H136D 0.40 deleterious(0.03) benign(0.052) TCGA-BA-6871-01 5 157166327 157166327 A T THG1L Splice_Site p.X246_splice 0.38 TCGA-BA-6871-01 5 22078866 22078866 G A CDH12 5'UTR 0.13 TCGA-BA-6871-01 5 32789781 32789781 C A AC026703.1 Missense_Mutation p.P92T 0.30 possibly_damaging(0.803) TCGA-BA-6871-01 6 102503442 102503442 C A GRIK2 Missense_Mutation p.A850D 0.17 deleterious(0.02) possibly_damaging(0.824) TCGA-BA-6871-01 6 126210254 126210258 GAGAA - NCOA7 Frame_Shift_Del p.E352Vfs*25 0.39 TCGA-BA-6871-01 6 139495643 139495643 C T HECA Silent p.T478T 0.08 TCGA-BA-6871-01 6 30166498 30166498 C G TRIM26 Missense_Mutation p.R128P 0.42 tolerated(0.18) possibly_damaging(0.829) TCGA-BA-6871-01 6 32135152 32135152 C T EGFL8 Silent p.R209R 0.11 TCGA-BA-6871-01 6 34949518 34949518 G C ANKS1A Missense_Mutation p.E163Q 0.33 tolerated(0.16) benign(0.223) TCGA-BA-6871-01 6 38120124 38120124 G C ZFAND3 Missense_Mutation p.V215L 0.52 tolerated(0.13) possibly_damaging(0.493) TCGA-BA-6871-01 6 42985674 42985674 A C KLHDC3 Missense_Mutation p.I139L 0.25 tolerated(0.46) benign(0.001) TCGA-BA-6871-01 6 52847396 52847396 G A GSTA4 Silent p.I174I 0.34 TCGA-BA-6871-01 6 97063544 97063544 A G FHL5 Missense_Mutation p.N251D 0.20 tolerated(0.17) possibly_damaging(0.601) TCGA-BA-6871-01 7 110763135 110763135 A T LRRN3 Missense_Mutation p.N103Y 0.12 deleterious(0) probably_damaging(0.969) TCGA-BA-6871-01 7 141797392 141797392 G C MGAM Splice_Site p.X1669_splice 0.32 TCGA-BA-6871-01 7 2987368 2987368 C T CARD11 Missense_Mutation p.A21T 0.22 deleterious(0.03) benign(0.285) TCGA-BA-6871-01 7 29923502 29923502 C T WIPF3 Missense_Mutation p.P131L 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-BA-6871-01 7 44610375 44610375 C T DDX56 Missense_Mutation p.R331Q 0.28 tolerated(0.15) benign(0.001) TCGA-BA-6871-01 7 47924243 47924243 T C PKD1L1 Missense_Mutation p.Y1073C 0.23 deleterious(0) probably_damaging(0.99) TCGA-BA-6871-01 7 50358680 50358680 A G IKZF1 Missense_Mutation p.D8G 0.24 tolerated(0.23) possibly_damaging(0.615) TCGA-BA-6871-01 7 50450284 50450284 G A IKZF1 Silent p.Q156Q 0.19 TCGA-BA-6871-01 7 6043690 6043690 C G PMS2 Splice_Site p.X55_splice 0.29 TCGA-BA-6871-01 7 6731676 6731676 A T ZNF12 Nonsense_Mutation p.C299* 0.56 TCGA-BA-6871-01 7 72413639 72413639 C T POM121 Missense_Mutation p.S771L 0.15 tolerated(0.21) benign(0.422) TCGA-BA-6871-01 7 75168691 75168691 G A HIP1 Missense_Mutation p.R1005W 0.22 deleterious(0) probably_damaging(1) TCGA-BA-6871-01 7 82585126 82585126 C G PCLO Missense_Mutation p.E1715Q 0.28 unknown(0) TCGA-BA-6871-01 7 87908865 87908865 A T STEAP4 Missense_Mutation p.S410T 0.40 tolerated(0.05) benign(0.005) TCGA-BA-6871-01 7 912967 912967 G A SUN1 Silent p.%3D 0.17 TCGA-BA-6871-01 7 91695764 91695764 T C AKAP9 Silent p.H2078H 0.21 TCGA-BA-6871-01 8 10583218 10583218 G A SOX7 3'UTR 0.23 TCGA-BA-6871-01 8 114110999 114110999 C A CSMD3 Missense_Mutation p.E301D 0.06 tolerated(0.2) benign(0.02) TCGA-BA-6871-01 8 133048660 133048660 C A OC90 Intron 0.13 TCGA-BA-6871-01 8 133153390 133153390 C A KCNQ3 Missense_Mutation p.W484L 0.29 tolerated(0.6) possibly_damaging(0.907) TCGA-BA-6871-01 9 104375732 104375732 C A GRIN3A Missense_Mutation p.G898W 0.73 deleterious(0) probably_damaging(0.999) TCGA-BA-6871-01 9 104432608 104432608 C T GRIN3A Missense_Mutation p.E696K 0.28 deleterious(0) probably_damaging(0.999) TCGA-BA-6871-01 9 132375462 132375462 G A C9orf50 Missense_Mutation p.S371L 0.22 deleterious(0.01) possibly_damaging(0.649) TCGA-BA-6871-01 9 137715309 137715309 C A COL5A1 Silent p.G1564G 0.34 TCGA-BA-6871-01 9 138531020 138531020 C G GLT6D1 Missense_Mutation p.R5T 0.29 deleterious(0.01) possibly_damaging(0.908) TCGA-BA-6871-01 9 15472711 15472711 C G PSIP1 Missense_Mutation p.R299T 0.41 tolerated(0.25) probably_damaging(0.977) TCGA-BA-6871-01 9 8525016 8525016 C G PTPRD Missense_Mutation p.Q196H 0.26 deleterious(0.03) benign(0.271) TCGA-BA-6871-01 9 95062242 95062242 G A NOL8 Missense_Mutation p.R1078C 0.35 tolerated(0.12) benign(0.066) TCGA-BA-6871-01 X 23700512 23700512 G A PRDX4 Splice_Site p.X200_splice 0.37 TCGA-BA-6871-01 X 38145068 38145068 C G RPGR Missense_Mutation p.E1062Q 0.56 unknown(0) TCGA-BA-6871-01 X 47306830 47306831 CA - ZNF41 Frame_Shift_Del p.*780R 0.50 TCGA-BA-6871-01 X 53631658 53631658 G A HUWE1 Silent p.G878G 0.32 TCGA-BA-6872-01 10 108437080 108437080 C T SORCS1 Missense_Mutation p.R608Q 0.30 deleterious(0) probably_damaging(0.935) TCGA-BA-6872-01 10 127414390 127414390 C G EDRF1 Missense_Mutation p.P259A 0.07 tolerated(0.13) benign(0.009) TCGA-BA-6872-01 10 127503624 127503624 C G UROS Missense_Mutation p.E75Q 0.09 tolerated(0.11) benign(0.009) TCGA-BA-6872-01 10 51821270 51821270 C T RP11-324H6.5 RNA 0.21 TCGA-BA-6872-01 10 55955582 55955594 TTTTCATCCAGTA - PCDH15 Frame_Shift_Del p.I385Tfs*32 0.24 TCGA-BA-6872-01 10 6470234 6470234 T C PRKCQ Missense_Mutation p.M686V 0.56 tolerated(0.14) benign(0.153) TCGA-BA-6872-01 10 73892814 73892814 C G ASCC1 Splice_Site p.X319_splice 0.10 TCGA-BA-6872-01 10 79616567 79616567 G T DLG5 Missense_Mutation p.L153M 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BA-6872-01 10 82330001 82330001 C T SH2D4B Silent p.Y92Y 0.28 TCGA-BA-6872-01 10 93741428 93741428 C T BTAF1 Missense_Mutation p.S595L 0.15 tolerated(0.14) benign(0.093) TCGA-BA-6872-01 10 95452474 95452474 C G FRA10AC1 Missense_Mutation p.K103N 0.15 deleterious(0) probably_damaging(0.992) TCGA-BA-6872-01 10 98078208 98078208 C A DNTT Silent p.L101L 0.32 TCGA-BA-6872-01 11 105924371 105924371 C T KBTBD3 Missense_Mutation p.G349S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-BA-6872-01 11 108811196 108811196 C T DDX10 3'UTR 0.27 TCGA-BA-6872-01 11 121174255 121174255 C G SC5D Silent p.V57V 0.26 TCGA-BA-6872-01 11 124757312 124757312 G A ROBO4 Missense_Mutation p.L714F 0.25 deleterious(0.04) probably_damaging(0.948) TCGA-BA-6872-01 11 1272931 1272931 A G MUC5B Missense_Mutation p.T4941A 0.24 unknown(0) TCGA-BA-6872-01 11 13736146 13736146 A G FAR1 Missense_Mutation p.Y349C 0.23 tolerated(0.11) benign(0.438) TCGA-BA-6872-01 11 16816213 16816213 G C PLEKHA7 Nonsense_Mutation p.S856* 0.11 TCGA-BA-6872-01 11 5536217 5536217 A G UBQLNL 3'UTR 0.21 TCGA-BA-6872-01 11 59376155 59376155 C G OSBP Missense_Mutation p.Q208H 0.10 tolerated(0.57) benign(0.01) TCGA-BA-6872-01 11 61080987 61080987 C T DDB1 Missense_Mutation p.D685N 0.12 tolerated(0.1) benign(0.022) TCGA-BA-6872-01 11 65793160 65793160 G A CATSPER1 Missense_Mutation p.H231Y 0.64 deleterious(0.05) benign(0.035) TCGA-BA-6872-01 11 71821481 71821481 G A LRTOMT 3'UTR 0.77 TCGA-BA-6872-01 11 71821488 71821488 G C LRTOMT 3'UTR 0.78 TCGA-BA-6872-01 11 92577879 92577879 C T FAT3 Silent p.N3782N 0.44 TCGA-BA-6872-01 11 94349700 94349700 T C PIWIL4 Missense_Mutation p.V662A 0.25 deleterious(0) benign(0.158) TCGA-BA-6872-01 12 103695998 103695998 G T C12orf42 Missense_Mutation p.S324Y 0.28 deleterious(0) probably_damaging(0.957) TCGA-BA-6872-01 12 105591721 105591721 G C APPL2 Missense_Mutation p.L298V 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-BA-6872-01 12 108145684 108145684 C T PRDM4 Missense_Mutation p.E212K 0.08 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-BA-6872-01 12 108985942 108985942 G A TMEM119 Missense_Mutation p.T73I 0.20 tolerated(0.2) benign(0.001) TCGA-BA-6872-01 12 110834183 110834183 T C ANAPC7 Missense_Mutation p.Y93C 0.39 deleterious(0) benign(0.298) TCGA-BA-6872-01 12 110929916 110929916 G A VPS29 Missense_Mutation p.P152L 0.14 deleterious(0.02) possibly_damaging(0.459) TCGA-BA-6872-01 12 117909103 117909103 C T KSR2 Missense_Mutation p.A869T 0.34 deleterious(0.05) possibly_damaging(0.461) TCGA-BA-6872-01 12 121442193 121442193 C T C12orf43 Silent p.E184E 0.21 TCGA-BA-6872-01 12 125397265 125397265 T C UBC Silent p.G351G 0.15 TCGA-BA-6872-01 12 130856284 130856284 G A PIWIL1 3'UTR 0.56 TCGA-BA-6872-01 12 43822440 43822440 G T ADAMTS20 Missense_Mutation p.P1218T 0.25 tolerated(0.12) possibly_damaging(0.477) TCGA-BA-6872-01 12 53708119 53708119 G A AAAS Missense_Mutation p.L218F 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-BA-6872-01 12 73012775 73012775 T C TRHDE Missense_Mutation p.L764P 0.16 deleterious(0) benign(0.005) TCGA-BA-6872-01 12 73015465 73015465 G T TRHDE Missense_Mutation p.G825V 0.18 deleterious(0) probably_damaging(0.999) TCGA-BA-6872-01 13 108518304 108518304 G A FAM155A Missense_Mutation p.P214L 0.13 deleterious(0.02) benign(0.123) TCGA-BA-6872-01 13 24164313 24164313 G C TNFRSF19 5'UTR 0.10 TCGA-BA-6872-01 14 101442811 101442811 T C RP11-909M7.3 Intron 0.11 TCGA-BA-6872-01 14 106110094 106110094 A T IGHG2 Missense_Mutation p.F175Y 0.27 tolerated(0.56) benign(0.003) TCGA-BA-6872-01 14 63747788 63747788 G A RHOJ Missense_Mutation p.E113K 0.26 tolerated(0.13) probably_damaging(0.922) TCGA-BA-6872-01 14 63747813 63747813 A G RHOJ Missense_Mutation p.D121G 0.29 deleterious(0.03) benign(0.001) TCGA-BA-6872-01 14 64532170 64532170 A G SYNE2 Missense_Mutation p.I3411M 0.51 benign(0.003) TCGA-BA-6872-01 15 41029852 41029852 C T RMDN3 Missense_Mutation p.E400K 0.06 deleterious(0.02) benign(0.098) TCGA-BA-6872-01 15 43815715 43815716 - A MAP1A Frame_Shift_Ins p.H684Tfs*29 0.20 TCGA-BA-6872-01 15 44671915 44671915 C G CASC4 Missense_Mutation p.S277C 0.48 deleterious(0.03) possibly_damaging(0.823) TCGA-BA-6872-01 15 45884445 45884445 G C BLOC1S6 Missense_Mutation p.Q65H 0.21 deleterious(0.03) probably_damaging(0.938) TCGA-BA-6872-01 15 54305645 54305645 G A UNC13C Missense_Mutation p.R182Q 0.35 deleterious_low_confidence(0) benign(0.44) TCGA-BA-6872-01 15 62165518 62165518 C G VPS13C Missense_Mutation p.R3502T 0.22 deleterious(0.01) benign(0.309) TCGA-BA-6872-01 15 65968902 65968902 T C DENND4A Missense_Mutation p.D1416G 0.16 tolerated(0.37) benign(0.011) TCGA-BA-6872-01 15 81614833 81614833 G A STARD5 Silent p.D66D 0.20 TCGA-BA-6872-01 15 90934061 90934061 G AT IQGAP1 Frame_Shift_Ins p.N38* 0.23 TCGA-BA-6872-01 16 20442541 20442541 G A ACSM5 Splice_Site p.X403_splice 0.18 TCGA-BA-6872-01 16 23641719 23641719 C T PALB2 Missense_Mutation p.D586N 0.24 tolerated(0.22) benign(0.103) TCGA-BA-6872-01 16 3533528 3533528 G C NAA60 Missense_Mutation p.R168P 0.06 tolerated(0.19) benign(0.004) TCGA-BA-6872-01 16 49764716 49764716 G C ZNF423 Missense_Mutation p.D81E 0.04 tolerated(0.64) benign(0.019) TCGA-BA-6872-01 16 57416991 57416991 G A CX3CL1 3'UTR 0.21 TCGA-BA-6872-01 16 57697542 57697542 C T GPR56 3'UTR 0.24 TCGA-BA-6872-01 16 70211272 70211272 G A CLEC18C Silent p.A115A 0.11 TCGA-BA-6872-01 16 81957192 81957192 G - PLCG2 Frame_Shift_Del p.G805Afs*31 0.30 TCGA-BA-6872-01 17 10302117 10302117 C T MYH8 Missense_Mutation p.E1317K 0.11 deleterious(0.03) probably_damaging(0.933) TCGA-BA-6872-01 17 10584338 10584338 G C SCO1 3'UTR 0.07 TCGA-BA-6872-01 17 10608466 10608466 A G ADPRM Missense_Mutation p.I75V 0.17 tolerated(0.21) benign(0.019) TCGA-BA-6872-01 17 16612243 16612243 T C CCDC144A Missense_Mutation p.L291S 0.38 tolerated(0.26) benign(0.054) TCGA-BA-6872-01 17 27017211 27017211 A G SUPT6H Missense_Mutation p.M1152V 0.31 tolerated(0.09) benign(0.04) TCGA-BA-6872-01 17 35564685 35564685 T C ACACA Missense_Mutation p.Y1246C 0.19 tolerated(0.16) probably_damaging(0.936) TCGA-BA-6872-01 17 38906826 38906826 C G KRT25 Missense_Mutation p.L327F 0.07 deleterious(0) probably_damaging(1) TCGA-BA-6872-01 17 39912040 39912040 C T JUP Missense_Mutation p.G732S 0.18 tolerated_low_confidence(0.36) benign(0.041) TCGA-BA-6872-01 17 41244991 41244991 C T BRCA1 Missense_Mutation p.D853N 0.27 deleterious(0) probably_damaging(0.999) TCGA-BA-6872-01 17 43226740 43226743 GGAG - HEXIM1 Frame_Shift_Del p.E62Gfs*23 0.21 TCGA-BA-6872-01 17 4836583 4836583 G C GP1BA Missense_Mutation p.E228D 0.63 tolerated(0.25) benign(0.092) TCGA-BA-6872-01 17 48821155 48821155 T C LUC7L3 Missense_Mutation p.L172P 0.17 deleterious(0.03) unknown(0) TCGA-BA-6872-01 17 62579622 62579622 G C SMURF2 Missense_Mutation p.L176V 0.04 tolerated(1) benign(0.007) TCGA-BA-6872-01 17 6900305 6900305 G A ALOX12 Nonsense_Mutation p.W99* 0.62 TCGA-BA-6872-01 17 6913191 6913191 C T AC027763.2 Silent p.G7G 0.23 TCGA-BA-6872-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.58 tolerated(0.11) benign(0.308) TCGA-BA-6872-01 18 33935606 33935606 C T FHOD3 Silent p.A90A 0.58 TCGA-BA-6872-01 18 45371798 45371798 A G SMAD2 Missense_Mutation p.V398A 0.52 deleterious(0) probably_damaging(0.99) TCGA-BA-6872-01 18 71959201 71959201 C A CYB5A 5'UTR 0.22 TCGA-BA-6872-01 19 14736338 14736338 G A EMR3 Missense_Mutation p.S629F 0.16 deleterious(0.03) benign(0.164) TCGA-BA-6872-01 19 2121203 2121203 G A AP3D1 Silent p.I403I 0.20 TCGA-BA-6872-01 19 21720747 21720747 C A ZNF429 Missense_Mutation p.T631N 0.11 tolerated(1) benign(0.002) TCGA-BA-6872-01 19 21720754 21720754 T C ZNF429 Silent p.S633S 0.11 TCGA-BA-6872-01 19 2210666 2210666 A T DOT1L Missense_Mutation p.K388M 0.13 deleterious(0) probably_damaging(0.997) TCGA-BA-6872-01 19 2717766 2717766 G A DIRAS1 Silent p.F13F 0.24 TCGA-BA-6872-01 19 33464412 33464412 G A C19orf40 Missense_Mutation p.E63K 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-BA-6872-01 19 36051332 36051332 G A ATP4A Silent p.P240P 0.14 TCGA-BA-6872-01 19 50412137 50412137 C T NUP62 Missense_Mutation p.V310M 0.15 tolerated(0.2) benign(0.017) TCGA-BA-6872-01 19 53384531 53384539 GCGAAGGTC - ZNF320 In_Frame_Del p.K280_A283delinsN 0.19 TCGA-BA-6872-01 19 53472529 53472529 G A ZNF702P RNA 0.29 TCGA-BA-6872-01 19 53652011 53652011 T C ZNF347 Missense_Mutation p.E66G 0.18 tolerated(0.21) benign(0) TCGA-BA-6872-01 19 54234334 54234334 A G MIR518A1 RNA 0.19 TCGA-BA-6872-01 19 54677830 54677830 G T MBOAT7 Missense_Mutation p.L443M 0.19 tolerated(0.08) benign(0.284) TCGA-BA-6872-01 19 57327434 57327434 A C PEG3 Missense_Mutation p.S792R 0.45 tolerated(0.13) probably_damaging(0.943) TCGA-BA-6872-01 19 59028615 59028615 C T ZBTB45 Silent p.P142P 0.17 TCGA-BA-6872-01 1 147597192 147597192 C T NBPF24 Missense_Mutation p.E90K 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-BA-6872-01 1 151955630 151955630 C G S100A10 3'UTR 0.05 TCGA-BA-6872-01 1 152957935 152957935 G A SPRR1A Missense_Mutation p.V77I 0.31 tolerated(0.18) probably_damaging(0.935) TCGA-BA-6872-01 1 158224916 158224916 C G CD1A Missense_Mutation p.S34C 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-BA-6872-01 1 158735835 158735835 A C OR6N1 Missense_Mutation p.L213R 0.06 deleterious(0.01) probably_damaging(0.968) TCGA-BA-6872-01 1 160165806 160165806 G A CASQ1 Silent p.E257E 0.13 TCGA-BA-6872-01 1 163122400 163122400 C G RGS5 Missense_Mutation p.K108N 0.18 deleterious(0.02) benign(0.124) TCGA-BA-6872-01 1 168260618 168260618 T C TBX19 Missense_Mutation p.F142L 0.16 deleterious(0) probably_damaging(1) TCGA-BA-6872-01 1 17029267 17029278 GTGGTCCCACAG - ESPNP RNA 0.09 TCGA-BA-6872-01 1 205272810 205272810 T A NUAK2 Missense_Mutation p.E552V 0.13 deleterious(0) probably_damaging(0.999) TCGA-BA-6872-01 1 205272811 205272811 C T NUAK2 Missense_Mutation p.E552K 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-BA-6872-01 1 214170581 214170581 G A PROX1 Missense_Mutation p.E235K 0.17 deleterious(0.01) possibly_damaging(0.87) TCGA-BA-6872-01 1 226074610 226074610 G A LEFTY1 Silent p.F306F 0.14 TCGA-BA-6872-01 1 47398701 47398701 G A CYP4A11 Missense_Mutation p.S414F 0.19 deleterious(0.02) benign(0.111) TCGA-BA-6872-01 1 47611855 47611855 G C CYP4A22 Intron 0.14 TCGA-BA-6872-01 1 65300341 65300341 C T JAK1 Splice_Site p.X1124_splice 0.23 TCGA-BA-6872-01 1 66064395 66064395 G A LEPR Missense_Mutation p.G301E 0.25 tolerated(0.1) possibly_damaging(0.677) TCGA-BA-6872-01 1 67793933 67793933 A C IL12RB2 Missense_Mutation p.Y177S 0.44 tolerated(0.27) benign(0.015) TCGA-BA-6872-01 1 76272747 76272747 A G MSH4 Missense_Mutation p.E170G 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-6872-01 1 82415915 82415915 T G LPHN2 Missense_Mutation p.F414C 0.24 tolerated(0.17) benign(0.001) TCGA-BA-6872-01 1 82416120 82416120 A T LPHN2 Silent p.T482T 0.24 TCGA-BA-6872-01 20 36992694 36992694 G T LBP Missense_Mutation p.A240S 0.11 tolerated(0.41) benign(0.02) TCGA-BA-6872-01 20 48263615 48263615 T C B4GALT5 Missense_Mutation p.D84G 0.22 deleterious(0.04) benign(0.434) TCGA-BA-6872-01 20 62626765 62626765 G T PRPF6 Missense_Mutation p.G234V 0.18 tolerated(0.54) benign(0.015) TCGA-BA-6872-01 20 9561038 9561038 C G PAK7 Missense_Mutation p.E248D 0.09 tolerated_low_confidence(0.22) benign(0.159) TCGA-BA-6872-01 21 11038861 11038861 G T BAGE2 RNA 0.10 TCGA-BA-6872-01 21 37445191 37445191 C T CBR1 3'UTR 0.37 TCGA-BA-6872-01 21 43413679 43413679 G A ZBTB21 Missense_Mutation p.P176S 0.23 tolerated(0.1) benign(0.037) TCGA-BA-6872-01 21 46047691 46047691 C G KRTAP10-9 Silent p.V201V 0.20 TCGA-BA-6872-01 21 47783764 47783764 G C PCNT Missense_Mutation p.E842Q 0.06 possibly_damaging(0.727) TCGA-BA-6872-01 22 16449792 16449792 T C OR11H1 Missense_Mutation p.T5A 0.19 tolerated_low_confidence(0.52) benign(0.002) TCGA-BA-6872-01 22 18301236 18301236 C T MICAL3 Silent p.E1397E 0.17 TCGA-BA-6872-01 22 24463127 24463127 C T CABIN1 Silent p.L743L 0.15 TCGA-BA-6872-01 22 26886165 26886168 GTAA - SRRD Splice_Site p.X255_splice 0.24 TCGA-BA-6872-01 22 26928676 26928676 C T TPST2 Silent p.L359L 0.13 TCGA-BA-6872-01 22 45745620 45745620 T A SMC1B Missense_Mutation p.N1162Y 0.40 deleterious(0) probably_damaging(1) TCGA-BA-6872-01 2 114714934 114714934 C A ACTR3 Intron 0.14 TCGA-BA-6872-01 2 136614422 136614422 G T MCM6 Missense_Mutation p.A501E 0.34 deleterious(0) probably_damaging(1) TCGA-BA-6872-01 2 149501231 149501231 T G EPC2 Missense_Mutation p.D118E 0.38 deleterious(0) probably_damaging(0.999) TCGA-BA-6872-01 2 149868127 149868127 G A KIF5C Silent p.T937T 0.29 TCGA-BA-6872-01 2 166848067 166848067 G A SCN1A Silent p.I1906I 0.08 TCGA-BA-6872-01 2 168101809 168101809 G T XIRP2 Nonsense_Mutation p.E1303* 0.20 TCGA-BA-6872-01 2 170065990 170065990 G A LRP2 Missense_Mutation p.R2148W 0.14 probably_damaging(0.976) TCGA-BA-6872-01 2 175292478 175292479 TG - SCRN3 Frame_Shift_Del p.L377Rfs*18 0.09 TCGA-BA-6872-01 2 179213991 179213991 C T OSBPL6 Missense_Mutation p.S368F 0.06 deleterious(0) possibly_damaging(0.851) TCGA-BA-6872-01 2 179403855 179403855 C T TTN Missense_Mutation p.R32936H 0.12 TCGA-BA-6872-01 2 179544334 179544334 G A TTN Missense_Mutation p.P11219L 0.22 TCGA-BA-6872-01 2 183850902 183850902 T C NCKAP1 Missense_Mutation p.H340R 0.32 tolerated(0.15) benign(0.205) TCGA-BA-6872-01 2 212488717 212488717 C A ERBB4 Missense_Mutation p.R711L 0.06 deleterious(0) benign(0.414) TCGA-BA-6872-01 2 215854110 215854110 G T ABCA12 Missense_Mutation p.L1258I 0.11 deleterious(0.01) probably_damaging(0.955) TCGA-BA-6872-01 2 230693917 230693917 C T TRIP12 Missense_Mutation p.S433N 0.16 tolerated(0.32) benign(0.028) TCGA-BA-6872-01 2 24194165 24194165 G C UBXN2A Missense_Mutation p.D21H 0.07 deleterious(0.01) possibly_damaging(0.595) TCGA-BA-6872-01 2 28626989 28626989 A G FOSL2 Missense_Mutation p.M40V 0.24 deleterious(0.02) possibly_damaging(0.637) TCGA-BA-6872-01 2 44531220 44531220 T C SLC3A1 Intron 0.12 TCGA-BA-6872-01 2 51149017 51149017 A G NRXN1 Silent p.G307G 0.26 TCGA-BA-6872-01 2 55252582 55252582 A C RTN4 Missense_Mutation p.L885V 0.66 deleterious(0.04) benign(0.013) TCGA-BA-6872-01 3 101520115 101520115 G A NXPE3 Missense_Mutation p.D44N 0.14 tolerated(0.37) possibly_damaging(0.691) TCGA-BA-6872-01 3 109049325 109049325 C T DPPA4 Intron 0.15 TCGA-BA-6872-01 3 141161426 141161426 A G ZBTB38 Missense_Mutation p.T66A 0.16 tolerated(0.26) benign(0.017) TCGA-BA-6872-01 3 36873988 36873988 G C TRANK1 Silent p.L2318L 0.08 TCGA-BA-6872-01 3 42680530 42680530 G A NKTR Missense_Mutation p.E1112K 0.18 deleterious_low_confidence(0.04) benign(0.332) TCGA-BA-6872-01 3 57542704 57542704 G A PDE12 Missense_Mutation p.E200K 0.28 deleterious(0.01) benign(0.122) TCGA-BA-6872-01 4 106604428 106604428 G - INTS12 Frame_Shift_Del p.S284Cfs*3 0.16 TCGA-BA-6872-01 4 15589466 15589468 GAA - CC2D2A In_Frame_Del p.E1367del 0.20 TCGA-BA-6872-01 4 186380147 186380147 G C CCDC110 Missense_Mutation p.L532V 0.28 deleterious(0.01) possibly_damaging(0.831) TCGA-BA-6872-01 4 47548971 47548971 C G ATP10D Intron 0.17 TCGA-BA-6872-01 4 72635073 72635073 G A GC Silent p.L54L 0.09 TCGA-BA-6872-01 4 74274375 74274375 C T ALB Missense_Mutation p.A112V 0.18 deleterious(0.03) possibly_damaging(0.514) TCGA-BA-6872-01 4 76928608 76928608 T C CXCL9 5'UTR 0.45 TCGA-BA-6872-01 4 77231134 77231134 C A FAM47E-STBD1 Missense_Mutation p.A353E 0.17 tolerated(0.32) benign(0.007) TCGA-BA-6872-01 4 89627912 89627912 C A HERC3 Missense_Mutation p.T985K 0.20 deleterious(0) probably_damaging(0.999) TCGA-BA-6872-01 5 115782551 115782551 G T SEMA6A Missense_Mutation p.Q951K 0.20 tolerated(0.26) benign(0.04) TCGA-BA-6872-01 5 121188162 121188162 G C FTMT Missense_Mutation p.K168N 0.15 deleterious(0) possibly_damaging(0.617) TCGA-BA-6872-01 5 132440096 132440096 G T HSPA4 Missense_Mutation p.D831Y 0.17 deleterious(0.02) possibly_damaging(0.526) TCGA-BA-6872-01 5 13901525 13901525 C T DNAH5 Missense_Mutation p.A630T 0.18 possibly_damaging(0.787) TCGA-BA-6872-01 5 140012362 140012362 A T CD14 Missense_Mutation p.F69L 0.09 tolerated(0.09) benign(0.006) TCGA-BA-6872-01 5 141363007 141363007 G T RNF14 Missense_Mutation p.D376Y 0.12 deleterious(0) benign(0.004) TCGA-BA-6872-01 5 149215963 149215963 G A PPARGC1B Missense_Mutation p.G649R 0.17 tolerated(0.2) benign(0.01) TCGA-BA-6872-01 5 159821116 159821116 T C C5orf54 Missense_Mutation p.Y461C 0.12 deleterious(0) probably_damaging(0.998) TCGA-BA-6872-01 5 162866483 162866483 C T CCNG1 Missense_Mutation p.S74F 0.50 tolerated(0.06) benign(0.285) TCGA-BA-6872-01 5 169535531 169535531 T A FOXI1 Silent p.S351S 0.13 TCGA-BA-6872-01 5 180030128 180030128 C G FLT4 3'UTR 0.17 TCGA-BA-6872-01 6 146351225 146351225 A T GRM1 Missense_Mutation p.D191V 0.43 deleterious(0) probably_damaging(0.989) TCGA-BA-6872-01 6 151054974 151054974 A C PLEKHG1 Missense_Mutation p.K53Q 0.23 deleterious(0) possibly_damaging(0.548) TCGA-BA-6872-01 6 151766876 151766876 C A RMND1 Missense_Mutation p.R24I 0.29 deleterious_low_confidence(0.01) benign(0.284) TCGA-BA-6872-01 6 27775687 27775687 T G HIST1H2BL 5'UTR 0.24 TCGA-BA-6872-01 6 30122152 30122152 C T TRIM10 Missense_Mutation p.R347H 0.23 deleterious(0) probably_damaging(0.91) TCGA-BA-6872-01 6 36823524 36823524 C G PPIL1 3'UTR 0.20 TCGA-BA-6872-01 6 56417926 56417926 C A DST Missense_Mutation p.V2599L 0.30 benign(0.026) TCGA-BA-6872-01 6 57472427 57472427 G T PRIM2 3'UTR 0.09 TCGA-BA-6872-01 6 85472390 85472390 C G TBX18 Silent p.A123A 0.16 TCGA-BA-6872-01 6 90097057 90097057 A T RRAGD Missense_Mutation p.I134N 0.12 deleterious(0.01) possibly_damaging(0.761) TCGA-BA-6872-01 7 121738533 121738533 G A AASS Silent p.F542F 0.19 TCGA-BA-6872-01 7 143020479 143020479 G C CLCN1 Missense_Mutation p.E258D 0.19 deleterious(0.03) benign(0.346) TCGA-BA-6872-01 7 2290629 2290629 C T NUDT1 Missense_Mutation p.T178M 0.11 tolerated(0.08) benign(0.294) TCGA-BA-6872-01 7 40535977 40535977 G A SUGCT Missense_Mutation p.E368K 0.12 deleterious(0.02) possibly_damaging(0.457) TCGA-BA-6872-01 7 55218998 55218998 G A EGFR Missense_Mutation p.D191N 0.08 tolerated(0.61) benign(0.003) TCGA-BA-6872-01 7 87908676 87908676 T A STEAP4 3'UTR 0.22 TCGA-BA-6872-01 8 113256689 113256689 C T CSMD3 Missense_Mutation p.G3446S 0.18 deleterious(0) probably_damaging(0.96) TCGA-BA-6872-01 8 113317029 113317029 A G CSMD3 Silent p.Y2729Y 0.15 TCGA-BA-6872-01 8 125463385 125463385 G A TRMT12 Missense_Mutation p.E73K 0.14 tolerated(0.33) benign(0.104) TCGA-BA-6872-01 8 16963031 16963031 A G MICU3 Missense_Mutation p.T399A 0.17 deleterious(0) benign(0.298) TCGA-BA-6872-01 8 23702493 23702493 G - STC1 Frame_Shift_Del p.R179Efs*4 0.35 TCGA-BA-6872-01 8 39613286 39613286 C G ADAM2 Missense_Mutation p.K586N 0.72 tolerated(0.26) benign(0.012) TCGA-BA-6872-01 8 43147924 43147924 G T POTEA Intron 0.28 TCGA-BA-6872-01 8 77763747 77763747 G C ZFHX4 Silent p.T1530T 0.08 TCGA-BA-6872-01 8 89128802 89128802 T G MMP16 Missense_Mutation p.K339N 0.42 tolerated(0.36) probably_damaging(0.945) TCGA-BA-6872-01 9 21970971 21970971 G T CDKN2A Nonsense_Mutation p.Y129* 0.62 TCGA-BA-6872-01 X 151818953 151818953 C T GABRQ Nonsense_Mutation p.Q271* 0.75 TCGA-BA-6872-01 X 17047658 17047658 A G REPS2 Missense_Mutation p.E228G 0.04 deleterious(0.02) possibly_damaging(0.755) TCGA-BA-6872-01 X 18646534 18646534 C T CDKL5 Missense_Mutation p.S847L 0.40 deleterious_low_confidence(0) benign(0.007) TCGA-BA-6872-01 X 229479 229479 C T GTPBP6 Silent p.T61T 0.17 TCGA-BA-6872-01 X 91133128 91133128 C A PCDH11X Nonsense_Mutation p.S630* 0.58 TCGA-BA-6873-01 10 106907398 106907398 C T SORCS3 Silent p.D442D 0.24 TCGA-BA-6873-01 10 118896029 118896029 C T VAX1 Missense_Mutation p.R128H 0.30 deleterious(0.01) unknown(0) TCGA-BA-6873-01 10 70525798 70525798 G C CCAR1 Missense_Mutation p.D754H 0.26 deleterious(0) probably_damaging(0.99) TCGA-BA-6873-01 10 96336456 96336456 G A HELLS Missense_Mutation p.R309H 0.11 deleterious(0) probably_damaging(0.987) TCGA-BA-6873-01 11 43284502 43284502 C T HNRNPKP3 RNA 0.48 TCGA-BA-6873-01 11 67044804 67044804 T - ADRBK1 Frame_Shift_Del p.S60Pfs*14 0.27 TCGA-BA-6873-01 12 111895024 111895024 A G ATXN2 Silent p.P1170P 0.07 TCGA-BA-6873-01 12 121465598 121465598 C T OASL Missense_Mutation p.R227K 0.40 tolerated(0.51) benign(0.02) TCGA-BA-6873-01 12 50475373 50475373 G A ASIC1 Missense_Mutation p.A556T 0.10 tolerated(0.88) benign(0.006) TCGA-BA-6873-01 12 6935885 6935885 C T GPR162 Missense_Mutation p.S428F 0.38 deleterious(0.02) probably_damaging(0.962) TCGA-BA-6873-01 12 70049468 70049468 C G BEST3 Missense_Mutation p.R409T 0.38 tolerated(0.76) benign(0.004) TCGA-BA-6873-01 13 95112446 95112446 T C DCT Missense_Mutation p.T360A 0.25 tolerated(0.7) benign(0.052) TCGA-BA-6873-01 14 103357700 103357700 C T TRAF3 Silent p.S255S 0.16 TCGA-BA-6873-01 14 34269100 34269100 C T NPAS3 Silent p.D529D 0.38 TCGA-BA-6873-01 14 73721248 73721248 C T PAPLN Missense_Mutation p.R417W 0.22 deleterious(0) probably_damaging(0.996) TCGA-BA-6873-01 15 78211241 78211241 T A RP11-114H24.7 Intron 0.29 TCGA-BA-6873-01 16 67974104 67974112 GCCCACGCC - LCAT In_Frame_Del p.G340_G342del 0.30 TCGA-BA-6873-01 16 69727514 69727515 CT - NFAT5 Frame_Shift_Del p.P1264Ifs*26 0.26 TCGA-BA-6873-01 17 16631037 16631038 AG - CCDC144A Frame_Shift_Del p.E697Afs*13 0.10 TCGA-BA-6873-01 17 3324174 3324174 G A OR3A3 Missense_Mutation p.A105T 0.40 deleterious(0.02) benign(0.397) TCGA-BA-6873-01 17 3851149 3851149 C T ATP2A3 Missense_Mutation p.G211S 0.15 deleterious(0.03) probably_damaging(1) TCGA-BA-6873-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.32 deleterious(0) probably_damaging(1) TCGA-BA-6873-01 17 7578384 7578401 GCAGCGCTCATGGTGGGG - TP53 In_Frame_Del p.P177_C182del 0.12 TCGA-BA-6873-01 18 7926657 7926657 G A PTPRM Silent p.V213V 0.08 TCGA-BA-6873-01 19 13941278 13941278 C T ZSWIM4 Missense_Mutation p.A795V 0.44 tolerated(0.05) unknown(0) TCGA-BA-6873-01 19 32844652 32844652 G A ZNF507 Missense_Mutation p.V306I 0.11 tolerated(0.21) possibly_damaging(0.796) TCGA-BA-6873-01 19 41920002 41920002 G A BCKDHA Missense_Mutation p.V142M 0.16 deleterious(0.05) benign(0.317) TCGA-BA-6873-01 19 42754040 42754040 G A ERF Silent p.Y104Y 0.17 TCGA-BA-6873-01 19 55489152 55489152 G A NLRP2 Missense_Mutation p.V120M 0.34 tolerated(0.18) benign(0.124) TCGA-BA-6873-01 19 9643595 9643595 T A ZNF426 Missense_Mutation p.Q84L 0.17 deleterious(0.03) possibly_damaging(0.722) TCGA-BA-6873-01 1 109824422 109824422 C T PSRC1 Missense_Mutation p.R113Q 0.36 deleterious(0) probably_damaging(1) TCGA-BA-6873-01 1 156845368 156845368 T C NTRK1 Silent p.L471L 0.16 TCGA-BA-6873-01 1 16462185 16462185 G A EPHA2 Nonsense_Mutation p.R465* 0.53 TCGA-BA-6873-01 1 222696022 222696022 C T HHIPL2 Missense_Mutation p.R699K 0.28 tolerated_low_confidence(0.31) benign(0.006) TCGA-BA-6873-01 1 222721186 222721186 G A HHIPL2 Silent p.F67F 0.36 TCGA-BA-6873-01 1 248402849 248402849 C T OR2M4 Silent p.L207L 0.12 TCGA-BA-6873-01 1 39879889 39879889 G A KIAA0754 Missense_Mutation p.V1182M 0.13 unknown(0) TCGA-BA-6873-01 1 44069439 44069439 G A PTPRF Silent p.K872K 0.17 TCGA-BA-6873-01 1 47691450 47691450 G A TAL1 Silent p.V37V 0.29 TCGA-BA-6873-01 1 67105475 67105475 G A SGIP1 Missense_Mutation p.A63T 0.19 deleterious(0.02) probably_damaging(0.98) TCGA-BA-6873-01 1 7902814 7902814 G C PER3 Nonstop_Mutation p.*1202Sext*21 0.23 TCGA-BA-6873-01 20 1161909 1161909 C T TMEM74B Silent p.P118P 0.17 TCGA-BA-6873-01 20 48524766 48524766 C A SPATA2 Missense_Mutation p.A88S 0.32 deleterious(0) probably_damaging(0.999) TCGA-BA-6873-01 21 34922496 34922496 C G SON Missense_Mutation p.P320R 0.11 possibly_damaging(0.804) TCGA-BA-6873-01 22 31979944 31979944 C G SFI1 Silent p.A444A 0.34 TCGA-BA-6873-01 22 38038771 38038771 G A SH3BP1 Intron 0.19 TCGA-BA-6873-01 22 40669448 40669448 C T TNRC6B Silent p.D995D 0.42 TCGA-BA-6873-01 22 50615649 50615649 G A PANX2 Missense_Mutation p.E170K 0.25 tolerated(0.17) possibly_damaging(0.883) TCGA-BA-6873-01 2 121981961 121981961 C T TFCP2L1 Missense_Mutation p.E466K 0.35 tolerated(0.07) benign(0.025) TCGA-BA-6873-01 2 132905790 132905790 C G ANKRD30BL 3'UTR 0.16 TCGA-BA-6873-01 2 175301127 175301127 G A GPR155 Missense_Mutation p.S777F 0.33 tolerated(0.57) possibly_damaging(0.515) TCGA-BA-6873-01 2 176958165 176958165 G T HOXD13 Missense_Mutation p.V183L 0.18 tolerated(0.69) benign(0.016) TCGA-BA-6873-01 2 202131411 202131411 C T CASP8 Nonsense_Mutation p.R127* 0.24 TCGA-BA-6873-01 2 202494012 202494012 A G TMEM237 Silent p.Y270Y 0.12 TCGA-BA-6873-01 2 209108281 209108281 C T IDH1 Missense_Mutation p.E190K 0.39 tolerated_low_confidence(0.46) benign(0.001) TCGA-BA-6873-01 2 54120868 54120868 T C PSME4 Silent p.S1327S 0.21 TCGA-BA-6873-01 3 108288376 108288376 G T KIAA1524 Missense_Mutation p.P325T 0.20 tolerated(0.33) benign(0.002) TCGA-BA-6873-01 3 122418604 122418604 C AT PARP14 Frame_Shift_Ins p.N401Kfs*4 0.23 TCGA-BA-6873-01 3 145912935 145912935 C T PLSCR4 Missense_Mutation p.M307I 0.11 deleterious(0.02) benign(0.113) TCGA-BA-6873-01 3 151082800 151082800 T C MED12L Silent p.Y962Y 0.21 TCGA-BA-6873-01 3 37095356 37095356 G C LRRFIP2 Missense_Mutation p.L718V 0.31 deleterious(0.02) possibly_damaging(0.667) TCGA-BA-6873-01 4 111441470 111441470 C T ENPEP Missense_Mutation p.R559C 0.53 deleterious(0) probably_damaging(0.998) TCGA-BA-6873-01 5 1253818 1253818 C T TERT 3'UTR 0.09 TCGA-BA-6873-01 5 154394891 154394891 C T KIF4B Missense_Mutation p.A491V 0.12 tolerated(0.36) benign(0.001) TCGA-BA-6873-01 5 178369801 178369801 C A ZNF454 Silent p.V3V 0.09 TCGA-BA-6873-01 5 180335650 180335650 C A BTNL8 Missense_Mutation p.F38L 0.35 deleterious(0) benign(0.19) TCGA-BA-6873-01 5 54603304 54603304 G A DHX29 Missense_Mutation p.A33V 0.21 tolerated_low_confidence(0.15) benign(0) TCGA-BA-6873-01 5 637680 637680 C G CEP72 Nonsense_Mutation p.S318* 0.12 TCGA-BA-6873-01 6 132938773 132938773 T G TAAR2 Missense_Mutation p.Y191S 0.09 deleterious(0) probably_damaging(1) TCGA-BA-6873-01 6 7230732 7230732 G A RREB1 Silent p.A800A 0.16 TCGA-BA-6873-01 7 34192937 34192937 C T BMPER 3'UTR 0.26 TCGA-BA-6873-01 7 48314202 48314202 C T ABCA13 Missense_Mutation p.H1647Y 0.30 benign(0.001) TCGA-BA-6873-01 7 70885987 70885987 G T WBSCR17 Missense_Mutation p.Q286H 0.21 tolerated(0.08) possibly_damaging(0.694) TCGA-BA-6873-01 7 82785646 82785646 C T PCLO Missense_Mutation p.R104H 0.16 unknown(0) TCGA-BA-6873-01 8 113241072 113241072 G T CSMD3 Missense_Mutation p.T3626K 0.19 deleterious(0) possibly_damaging(0.765) TCGA-BA-6873-01 8 3565950 3565950 T C CSMD1 Missense_Mutation p.H332R 0.34 benign(0.096) TCGA-BA-6873-01 8 63973923 63973923 G A TTPA Missense_Mutation p.P242L 0.09 deleterious(0) probably_damaging(1) TCGA-BA-6873-01 9 107332319 107332319 C A OR13C8 Missense_Mutation p.L291I 0.22 deleterious(0.01) benign(0.037) TCGA-BA-6873-01 9 139412704 139412704 G - NOTCH1 Frame_Shift_Del p.C381Vfs*250 0.31 TCGA-BA-6873-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.74 TCGA-BA-6873-01 X 12736856 12736856 T G FRMPD4 Missense_Mutation p.F1304C 0.53 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-BA-6873-01 X 49089767 49089767 G A CACNA1F Missense_Mutation p.S2L 0.63 deleterious_low_confidence(0) benign(0.236) TCGA-BA-7269-01 10 105218230 105218230 G A CALHM1 Silent p.P93P 0.36 TCGA-BA-7269-01 10 135053283 135053283 C G VENTX Nonsense_Mutation p.Y115* 0.44 TCGA-BA-7269-01 10 93038049 93038049 T G PCGF5 Nonsense_Mutation p.Y249* 0.13 TCGA-BA-7269-01 10 94294475 94294475 T C IDE Silent p.G117G 0.43 TCGA-BA-7269-01 11 62296954 62296954 C A AHNAK Missense_Mutation p.E1645D 0.24 benign(0.017) TCGA-BA-7269-01 11 63488185 63488185 C A RTN3 Missense_Mutation p.D737E 0.41 deleterious(0) probably_damaging(0.999) TCGA-BA-7269-01 12 62715344 62715344 A G USP15 Missense_Mutation p.N192S 0.30 tolerated(1) benign(0.001) TCGA-BA-7269-01 12 7065324 7065324 C T PTPN6 Silent p.I288I 0.29 TCGA-BA-7269-01 12 77439832 77439832 G T E2F7 Missense_Mutation p.P272H 0.24 deleterious(0.02) possibly_damaging(0.868) TCGA-BA-7269-01 13 23942586 23942586 G C SACS Silent p.L100L 0.25 TCGA-BA-7269-01 13 70549922 70549922 G A KLHL1 Silent p.T170T 0.09 TCGA-BA-7269-01 14 32560503 32560516 AGAGAAGTTCAGGC - ARHGAP5 Frame_Shift_Del p.R210Ifs*5 0.15 TCGA-BA-7269-01 14 38724915 38724915 G A CLEC14A Silent p.L105L 0.27 TCGA-BA-7269-01 14 86088851 86088851 T C FLRT2 Silent p.S331S 0.14 TCGA-BA-7269-01 15 43821107 43821107 G A MAP1A Missense_Mutation p.R2479Q 0.33 possibly_damaging(0.834) TCGA-BA-7269-01 15 77474216 77474216 T C PEAK1 Missense_Mutation p.K18R 0.33 deleterious(0) probably_damaging(0.998) TCGA-BA-7269-01 16 28975123 28975123 G T NFATC2IP Missense_Mutation p.G400V 0.23 deleterious(0) probably_damaging(0.998) TCGA-BA-7269-01 16 4774826 4774826 C T ANKS3 Silent p.P166P 0.26 TCGA-BA-7269-01 16 4793097 4793097 A C C16orf71 Missense_Mutation p.E279D 0.33 deleterious(0.02) benign(0.094) TCGA-BA-7269-01 16 64984856 64984856 G A CDH11 Silent p.L570L 0.31 TCGA-BA-7269-01 16 67761784 67761784 C T RANBP10 Missense_Mutation p.R497Q 0.28 tolerated(0.27) benign(0.003) TCGA-BA-7269-01 16 74372351 74372351 C G RP11-252A24.2 RNA 0.18 TCGA-BA-7269-01 17 17697704 17697704 G T RAI1 Missense_Mutation p.C481F 0.23 deleterious(0) probably_damaging(0.973) TCGA-BA-7269-01 17 38450241 38450241 A G CDC6 Silent p.K292K 0.23 TCGA-BA-7269-01 17 7578180 7578181 - T TP53 Frame_Shift_Ins p.E224* 0.19 TCGA-BA-7269-01 18 65180850 65180850 G T DSEL Silent p.S342S 0.19 TCGA-BA-7269-01 19 10597411 10597411 T C KEAP1 Missense_Mutation p.T598A 0.53 tolerated(0.28) benign(0.065) TCGA-BA-7269-01 19 12575387 12575387 C A ZNF709 Missense_Mutation p.C450F 0.23 deleterious(0) probably_damaging(0.999) TCGA-BA-7269-01 19 35175566 35175566 A G ZNF302 Silent p.K208K 0.46 TCGA-BA-7269-01 19 41749592 41749592 G A AXL Missense_Mutation p.R506H 0.35 deleterious(0.02) probably_damaging(0.97) TCGA-BA-7269-01 19 44516645 44516646 - AG ZNF230 3'UTR 0.15 TCGA-BA-7269-01 19 47941206 47941206 G A SLC8A2 Missense_Mutation p.A637V 0.20 tolerated(0.37) benign(0.11) TCGA-BA-7269-01 19 50463939 50463939 G A SIGLEC11 Silent p.G110G 0.09 TCGA-BA-7269-01 19 54206072 54206072 G C MIR518B RNA 0.18 TCGA-BA-7269-01 19 54611775 54611775 G A NDUFA3 3'Flank 0.14 TCGA-BA-7269-01 19 55823324 55823324 G A BRSK1 Missense_Mutation p.R742Q 0.22 deleterious_low_confidence(0.03) benign(0.267) TCGA-BA-7269-01 1 102271700 102271700 C A OLFM3 Missense_Mutation p.V211F 0.25 deleterious(0.01) benign(0.42) TCGA-BA-7269-01 1 151316211 151316211 G T RFX5 Missense_Mutation p.L235I 0.23 tolerated(0.39) possibly_damaging(0.748) TCGA-BA-7269-01 1 154303375 154303378 ACTT - ATP8B2 Frame_Shift_Del p.Y93Sfs*9 0.18 TCGA-BA-7269-01 1 157811469 157811469 A G CD5L Missense_Mutation p.I8T 0.16 tolerated(0.1) benign(0.022) TCGA-BA-7269-01 1 176738821 176738821 G T PAPPA2 Missense_Mutation p.D1468Y 0.13 deleterious(0) possibly_damaging(0.881) TCGA-BA-7269-01 1 197072273 197072273 C A ASPM Silent p.V2036V 0.47 TCGA-BA-7269-01 1 203682333 203682333 G C ATP2B4 Missense_Mutation p.R751P 0.18 deleterious(0.01) probably_damaging(1) TCGA-BA-7269-01 1 204587686 204587686 C T LRRN2 Missense_Mutation p.E479K 0.16 deleterious(0) probably_damaging(0.996) TCGA-BA-7269-01 1 213436154 213436154 C T RPS6KC1 Nonsense_Mutation p.Q1029* 0.17 TCGA-BA-7269-01 1 235952058 235952058 G T LYST Missense_Mutation p.S1544Y 0.23 deleterious(0.05) possibly_damaging(0.602) TCGA-BA-7269-01 1 248344299 248344299 A G OR2M2 Missense_Mutation p.K338E 0.16 tolerated_low_confidence(0.05) unknown(0) TCGA-BA-7269-01 1 2939160 2939160 G A ACTRT2 Missense_Mutation p.G304S 0.30 deleterious(0.01) probably_damaging(1) TCGA-BA-7269-01 1 32566231 32566231 G T TMEM39B Intron 0.67 TCGA-BA-7269-01 1 40034520 40034520 T A PABPC4 Missense_Mutation p.K277I 0.29 deleterious(0) probably_damaging(1) TCGA-BA-7269-01 1 47834266 47834266 A G CMPK1 Missense_Mutation p.I99M 0.25 deleterious(0) probably_damaging(0.95) TCGA-BA-7269-01 1 54562121 54562121 C T TCEANC2 Missense_Mutation p.T201M 0.12 tolerated(0.11) possibly_damaging(0.475) TCGA-BA-7269-01 1 7798137 7798137 G A CAMTA1 Silent p.K1259K 0.18 TCGA-BA-7269-01 1 7798138 7798138 C T CAMTA1 Silent p.L1260L 0.18 TCGA-BA-7269-01 1 78430374 78430374 C T FUBP1 Missense_Mutation p.R265Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-BA-7269-01 20 21312236 21312236 A G XRN2 Missense_Mutation p.E205G 0.30 deleterious(0) probably_damaging(0.999) TCGA-BA-7269-01 20 4880210 4880210 A G SLC23A2 Missense_Mutation p.F158S 0.28 deleterious(0) benign(0.398) TCGA-BA-7269-01 21 26978860 26978860 G C MRPL39 Missense_Mutation p.R61G 0.18 deleterious(0) probably_damaging(1) TCGA-BA-7269-01 21 27394285 27394285 C T APP Missense_Mutation p.E246K 0.20 tolerated(0.48) unknown(0) TCGA-BA-7269-01 22 29879403 29879403 C T NEFH Missense_Mutation p.T308I 0.17 deleterious(0.02) unknown(0) TCGA-BA-7269-01 22 37603361 37603361 C T SSTR3 Missense_Mutation p.R161H 0.47 deleterious(0) probably_damaging(0.977) TCGA-BA-7269-01 22 39387518 39387518 A G APOBEC3B Missense_Mutation p.H302R 0.06 tolerated(0.24) possibly_damaging(0.895) TCGA-BA-7269-01 2 131976382 131976382 G A POTEE Missense_Mutation p.R136H 0.26 tolerated_low_confidence(0.15) possibly_damaging(0.522) TCGA-BA-7269-01 2 143712382 143712382 C G KYNU Missense_Mutation p.A126G 0.09 deleterious(0.02) probably_damaging(0.986) TCGA-BA-7269-01 2 178096545 178096545 G C NFE2L2 Missense_Mutation p.D262E 0.19 deleterious(0.05) benign(0.005) TCGA-BA-7269-01 2 179471858 179471858 A G TTN Missense_Mutation p.I17824T 0.16 TCGA-BA-7269-01 2 219510940 219510940 T A ZNF142 Nonsense_Mutation p.K469* 0.43 TCGA-BA-7269-01 2 232653363 232653363 C A COPS7B Missense_Mutation p.T28N 0.41 deleterious(0.02) benign(0.328) TCGA-BA-7269-01 2 30863047 30863047 G C LCLAT1 Missense_Mutation p.E269D 0.45 deleterious(0) probably_damaging(0.999) TCGA-BA-7269-01 2 97427416 97427416 G A CNNM4 Missense_Mutation p.R227H 0.05 tolerated(0.11) possibly_damaging(0.849) TCGA-BA-7269-01 2 98852910 98852910 C T VWA3B Missense_Mutation p.T829M 0.32 deleterious(0.05) benign(0.107) TCGA-BA-7269-01 2 99160454 99160454 C T INPP4A Silent p.D311D 0.38 TCGA-BA-7269-01 3 10122836 10122836 A G FANCD2 Missense_Mutation p.Q1010R 0.28 tolerated(0.19) benign(0.012) TCGA-BA-7269-01 3 124906105 124906105 G A SLC12A8 Silent p.I122I 0.15 TCGA-BA-7269-01 3 12858258 12858258 C G CAND2 Missense_Mutation p.D609E 0.13 tolerated(1) benign(0.002) TCGA-BA-7269-01 3 171394572 171394572 G A PLD1 Missense_Mutation p.S683F 0.09 deleterious(0.05) probably_damaging(0.947) TCGA-BA-7269-01 3 27477926 27477926 C A SLC4A7 Missense_Mutation p.G172V 0.24 deleterious(0) probably_damaging(1) TCGA-BA-7269-01 3 47162207 47162207 C G SETD2 Missense_Mutation p.D1307H 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BA-7269-01 4 107016738 107016738 T G TBCK Silent p.A824A 0.20 TCGA-BA-7269-01 4 154525199 154525199 G A KIAA0922 Missense_Mutation p.S1012N 0.16 tolerated(0.65) benign(0.012) TCGA-BA-7269-01 4 172735665 172735665 G T GALNTL6 5'UTR 0.41 TCGA-BA-7269-01 4 187628726 187628732 CAGTTTT - FAT1 Frame_Shift_Del p.K751Sfs*14 0.74 TCGA-BA-7269-01 4 70360857 70360857 A G UGT2B4 Splice_Site p.X241_splice 0.31 TCGA-BA-7269-01 4 88904092 88904092 A - SPP1 3'UTR 0.38 TCGA-BA-7269-01 5 140256690 140256690 C G PCDHA12 Missense_Mutation p.L545V 0.30 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-BA-7269-01 5 140788292 140788292 A C PCDHGB6 Missense_Mutation p.N175H 0.56 deleterious(0.01) possibly_damaging(0.646) TCGA-BA-7269-01 5 156590665 156590665 G A FAM71B Missense_Mutation p.A204V 0.25 tolerated(0.23) benign(0.004) TCGA-BA-7269-01 5 156590666 156590666 C A FAM71B Missense_Mutation p.A204S 0.26 tolerated(0.6) benign(0.002) TCGA-BA-7269-01 5 94820469 94820469 C G TTC37 Missense_Mutation p.D1338H 0.41 tolerated(0.07) benign(0.221) TCGA-BA-7269-01 6 100898154 100898154 C T SIM1 Missense_Mutation p.G113S 0.23 deleterious(0) probably_damaging(1) TCGA-BA-7269-01 6 150174158 150174158 T C LRP11 Missense_Mutation p.D251G 0.07 deleterious(0.01) benign(0.26) TCGA-BA-7269-01 6 28540656 28540656 C A SCAND3 Nonsense_Mutation p.E1004* 0.35 TCGA-BA-7269-01 6 29692932 29692932 G C HLA-F Missense_Mutation p.Q245H 0.23 deleterious_low_confidence(0.02) probably_damaging(0.929) TCGA-BA-7269-01 6 31827476 31827476 C T NEU1 3'UTR 0.21 TCGA-BA-7269-01 6 32906490 32906490 G A HLA-DMB Missense_Mutation p.P103L 0.23 tolerated(0.19) benign(0.44) TCGA-BA-7269-01 6 38690577 38690577 C T DNAH8 5'Flank 0.21 TCGA-BA-7269-01 6 4135788 4135788 T C ECI2 Missense_Mutation p.M3V 0.24 tolerated_low_confidence(0.42) benign(0) TCGA-BA-7269-01 6 42934376 42934376 C T PEX6 Missense_Mutation p.E661K 0.19 tolerated(0.19) benign(0.04) TCGA-BA-7269-01 6 52268767 52268767 C A PAQR8 Silent p.I252I 0.25 TCGA-BA-7269-01 6 52993147 52993147 G A GCM1 Missense_Mutation p.L390F 0.04 tolerated(0.08) possibly_damaging(0.881) TCGA-BA-7269-01 6 99374830 99374830 G C FBXL4 Missense_Mutation p.T12S 0.16 tolerated_low_confidence(1) benign(0.004) TCGA-BA-7269-01 7 100198322 100198322 A G FBXO24 Missense_Mutation p.M553V 0.06 tolerated_low_confidence(0.38) benign(0) TCGA-BA-7269-01 7 65224177 65224177 T C SNORA22 3'Flank 0.33 TCGA-BA-7269-01 7 87910314 87910314 C T STEAP4 Silent p.G355G 0.34 TCGA-BA-7269-01 7 98608797 98608797 C A TRRAP Silent p.T3673T 0.22 TCGA-BA-7269-01 8 3432474 3432474 G A CSMD1 Missense_Mutation p.P446L 0.33 possibly_damaging(0.491) TCGA-BA-7269-01 8 97156765 97156765 G A GDF6 3'UTR 0.21 TCGA-BA-7269-01 9 21974678 21974678 T C CDKN2A Missense_Mutation p.Q50R 0.55 deleterious(0) probably_damaging(1) TCGA-BA-7269-01 9 79117750 79117750 C T GCNT1 Silent p.C151C 0.38 TCGA-BA-7269-01 9 95064013 95064013 C G NOL8 Missense_Mutation p.E999Q 0.31 tolerated(0.06) benign(0.178) TCGA-BA-7269-01 X 100078983 100078983 G A CSTF2 Missense_Mutation p.E185K 0.32 tolerated(0.08) probably_damaging(0.995) TCGA-BA-7269-01 X 125685719 125685719 G A DCAF12L1 Silent p.A291A 0.31 TCGA-BA-7269-01 X 152113985 152113985 C T ZNF185 Silent p.V493V 0.67 TCGA-BA-7269-01 X 31854842 31854842 G T DMD Missense_Mutation p.P2398Q 0.57 benign(0.03) TCGA-BA-A4IF-01 10 102672827 102672827 C T FAM178A 5'UTR 0.28 TCGA-BA-A4IF-01 10 108412274 108412274 C T SORCS1 Missense_Mutation p.V781I 0.22 deleterious(0.03) benign(0.422) TCGA-BA-A4IF-01 10 45430235 45430235 G A TMEM72 Missense_Mutation p.G161S 0.23 tolerated(0.82) probably_damaging(0.918) TCGA-BA-A4IF-01 10 45602470 45602470 C T RSU1P2 RNA 0.12 TCGA-BA-A4IF-01 10 47087372 47087372 G C NPY4R Missense_Mutation p.D197H 0.09 tolerated(0.11) possibly_damaging(0.6) TCGA-BA-A4IF-01 10 49393657 49393657 T A FRMPD2 Silent p.I766I 0.25 TCGA-BA-A4IF-01 10 70045128 70045128 T A PBLD Missense_Mutation p.H244L 0.20 tolerated(0.1) benign(0) TCGA-BA-A4IF-01 10 92675321 92675321 C T ANKRD1 Silent p.A276A 0.11 TCGA-BA-A4IF-01 10 98762697 98762697 G A SLIT1 Silent p.N1306N 0.22 TCGA-BA-A4IF-01 11 44957116 44957116 G A TP53I11 Silent p.F144F 0.09 TCGA-BA-A4IF-01 11 4936206 4936206 C T OR51G2 Missense_Mutation p.V230M 0.20 deleterious(0) probably_damaging(1) TCGA-BA-A4IF-01 12 121670836 121670837 - T P2RX4 Frame_Shift_Ins p.M377Ifs*13 0.28 TCGA-BA-A4IF-01 12 12274116 12274116 T C LRP6 Missense_Mutation p.S1596G 0.08 deleterious(0.02) probably_damaging(0.968) TCGA-BA-A4IF-01 12 13764681 13764681 G T GRIN2B Missense_Mutation p.N586K 0.24 deleterious(0) possibly_damaging(0.824) TCGA-BA-A4IF-01 12 58139630 58139630 C T TSPAN31 Missense_Mutation p.L56F 0.13 deleterious(0) probably_damaging(1) TCGA-BA-A4IF-01 13 29600974 29600974 G T MTUS2 Missense_Mutation p.L723F 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A4IF-01 13 45911439 45911439 C G TPT1 3'UTR 0.20 TCGA-BA-A4IF-01 13 51950210 51950210 C A INTS6 Missense_Mutation p.R568L 0.28 tolerated(0.66) benign(0.007) TCGA-BA-A4IF-01 14 100387174 100387174 A T EML1 Silent p.T642T 0.14 TCGA-BA-A4IF-01 14 102805159 102805159 G C ZNF839 Missense_Mutation p.E556Q 0.24 deleterious(0.02) probably_damaging(0.963) TCGA-BA-A4IF-01 14 79746660 79746660 G T NRXN3 Intron 0.24 TCGA-BA-A4IF-01 15 102516483 102516483 A T WASH3P 3'Flank 0.10 TCGA-BA-A4IF-01 15 80253470 80253470 G A BCL2A1 Missense_Mutation p.T156I 0.32 tolerated(0.11) benign(0.006) TCGA-BA-A4IF-01 16 1129719 1129719 G A SSTR5 Missense_Mutation p.G284D 0.28 deleterious(0.04) probably_damaging(0.963) TCGA-BA-A4IF-01 16 30593997 30593997 T A ZNF785 Missense_Mutation p.R368W 0.27 deleterious(0.01) possibly_damaging(0.869) TCGA-BA-A4IF-01 16 46952615 46952615 C A GPT2 Missense_Mutation p.S328Y 0.20 tolerated(0.13) benign(0.149) TCGA-BA-A4IF-01 16 69385576 69385576 T A TMED6 Silent p.L27L 0.24 TCGA-BA-A4IF-01 16 75563775 75563775 C T CHST5 Missense_Mutation p.V170I 0.21 tolerated(0.27) benign(0.228) TCGA-BA-A4IF-01 16 81733384 81733384 G C CMIP Missense_Mutation p.R578T 0.18 deleterious(0.04) possibly_damaging(0.906) TCGA-BA-A4IF-01 16 84513448 84513448 G C TLDC1 3'UTR 0.38 TCGA-BA-A4IF-01 16 85121917 85121917 A G KIAA0513 Missense_Mutation p.M408V 0.18 deleterious(0.05) benign(0.15) TCGA-BA-A4IF-01 17 10404587 10404587 G A MYH1 Missense_Mutation p.A1193V 0.14 tolerated(0.12) benign(0.027) TCGA-BA-A4IF-01 17 18160272 18160272 C A FLII Missense_Mutation p.R42L 0.25 deleterious(0.01) benign(0.166) TCGA-BA-A4IF-01 17 47788765 47788765 G A FAM117A Missense_Mutation p.P405L 0.23 deleterious(0) benign(0.245) TCGA-BA-A4IF-01 17 5085765 5085765 T C ZNF594 Missense_Mutation p.Y596C 0.09 deleterious(0) possibly_damaging(0.87) TCGA-BA-A4IF-01 17 61345182 61345190 ACGAATGCC - TANC2 In_Frame_Del p.M297_R299del 0.22 TCGA-BA-A4IF-01 17 7578530 7578530 A C TP53 Missense_Mutation p.F134V 0.51 deleterious(0) probably_damaging(1) TCGA-BA-A4IF-01 19 10224527 10224527 C T P2RY11 Silent p.L80L 0.17 TCGA-BA-A4IF-01 19 11833927 11833927 C T ZNF823 Missense_Mutation p.R141H 0.13 tolerated(0.08) benign(0.15) TCGA-BA-A4IF-01 19 15271428 15271428 C T NOTCH3 3'UTR 0.26 TCGA-BA-A4IF-01 19 46117912 46117912 C T EML2 Silent p.R749R 0.16 TCGA-BA-A4IF-01 19 54385908 54385908 G T PRKCG Missense_Mutation p.D54Y 0.22 deleterious(0) probably_damaging(0.972) TCGA-BA-A4IF-01 19 57743153 57743153 C A AURKC Silent p.A34A 0.07 TCGA-BA-A4IF-01 19 58153055 58153055 G A ZNF211 Missense_Mutation p.E466K 0.13 deleterious(0.04) benign(0.206) TCGA-BA-A4IF-01 19 9046079 9046079 G T MUC16 Missense_Mutation p.S11851Y 0.44 benign(0.016) TCGA-BA-A4IF-01 19 9059461 9059461 T C MUC16 Missense_Mutation p.S9329G 0.35 unknown(0) TCGA-BA-A4IF-01 19 9059462 9059462 A T MUC16 Silent p.S9328S 0.35 TCGA-BA-A4IF-01 1 119575875 119575875 C A WARS2 Missense_Mutation p.V248L 0.26 tolerated(0.62) benign(0.216) TCGA-BA-A4IF-01 1 12321202 12321202 C G VPS13D Missense_Mutation p.I470M 0.15 benign(0.05) TCGA-BA-A4IF-01 1 144828796 144828796 T G NBPF9 3'UTR 0.05 TCGA-BA-A4IF-01 1 16890496 16890496 G C NBPF1 Missense_Mutation p.T1121S 0.05 tolerated_low_confidence(0.47) benign(0.01) TCGA-BA-A4IF-01 1 228612821 228612821 T A HIST3H3 Missense_Mutation p.Q69L 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BA-A4IF-01 1 248039556 248039556 G T TRIM58 Missense_Mutation p.R409L 0.29 tolerated(0.06) possibly_damaging(0.644) TCGA-BA-A4IF-01 1 25883713 25883713 C A LDLRAP1 Missense_Mutation p.N138K 0.26 deleterious(0) benign(0.043) TCGA-BA-A4IF-01 1 85116066 85116066 C A SSX2IP Missense_Mutation p.R550L 0.17 tolerated(0.79) benign(0.002) TCGA-BA-A4IF-01 1 95709957 95709957 G A RWDD3 Silent p.E92E 0.24 TCGA-BA-A4IF-01 20 50090571 50090571 C G NFATC2 Missense_Mutation p.E552Q 0.21 tolerated(1) benign(0.352) TCGA-BA-A4IF-01 20 54961341 54961341 C A AURKA Missense_Mutation p.K97N 0.09 tolerated(0.22) benign(0.003) TCGA-BA-A4IF-01 21 28210183 28210183 A G ADAMTS1 Silent p.G873G 0.12 TCGA-BA-A4IF-01 21 31802793 31802793 G A KRTAP13-4 Missense_Mutation p.R67H 0.15 tolerated(0.37) benign(0.036) TCGA-BA-A4IF-01 22 20819166 20819166 C A KLHL22 Missense_Mutation p.R364L 0.24 tolerated(0.05) possibly_damaging(0.625) TCGA-BA-A4IF-01 22 42393114 42393114 T C SEPT3 3'UTR 0.36 TCGA-BA-A4IF-01 22 50684138 50684138 C G HDAC10 Missense_Mutation p.R651T 0.09 deleterious(0) possibly_damaging(0.821) TCGA-BA-A4IF-01 2 105883845 105883845 T A TGFBRAP1 Missense_Mutation p.T860S 0.18 deleterious_low_confidence(0) benign(0.029) TCGA-BA-A4IF-01 2 108608643 108608643 C T SLC5A7 Missense_Mutation p.A87V 0.19 deleterious(0) possibly_damaging(0.838) TCGA-BA-A4IF-01 2 120847933 120847933 A C EPB41L5 Missense_Mutation p.Q295P 0.06 deleterious(0) probably_damaging(0.998) TCGA-BA-A4IF-01 2 157186571 157186571 C T NR4A2 Missense_Mutation p.S43N 0.37 tolerated(0.15) benign(0.034) TCGA-BA-A4IF-01 2 197297889 197297889 C A HECW2 Missense_Mutation p.D87Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-BA-A4IF-01 2 204032068 204032068 C T NBEAL1 Silent p.L1965L 0.43 TCGA-BA-A4IF-01 2 226273793 226273793 G A NYAP2 Missense_Mutation p.R66Q 0.37 deleterious(0.02) benign(0.002) TCGA-BA-A4IF-01 2 51255135 51255135 A T NRXN1 Missense_Mutation p.F93I 0.12 deleterious(0.02) possibly_damaging(0.486) TCGA-BA-A4IF-01 3 100963310 100963310 T C IMPG2 Missense_Mutation p.E622G 0.08 deleterious(0) benign(0.007) TCGA-BA-A4IF-01 3 132378464 132378464 C T ACAD11 Silent p.L44L 0.15 TCGA-BA-A4IF-01 3 154802023 154802023 C T MME Nonsense_Mutation p.R23* 0.09 TCGA-BA-A4IF-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.53 deleterious(0.02) probably_damaging(0.959) TCGA-BA-A4IF-01 3 37365649 37365649 A G GOLGA4 Missense_Mutation p.I780V 0.16 benign(0.019) TCGA-BA-A4IF-01 3 49137075 49137075 G C QARS Missense_Mutation p.S465C 0.10 deleterious(0.01) probably_damaging(1) TCGA-BA-A4IF-01 4 184241063 184241063 G C CLDN22 Missense_Mutation p.D103E 0.18 tolerated(0.68) benign(0.326) TCGA-BA-A4IF-01 4 187628173 187628173 G A FAT1 Nonsense_Mutation p.R937* 0.38 TCGA-BA-A4IF-01 4 1985046 1985046 C T NELFA Silent p.%3D 0.08 TCGA-BA-A4IF-01 4 6863455 6863455 G C KIAA0232 Missense_Mutation p.C449S 0.32 tolerated(0.14) benign(0.015) TCGA-BA-A4IF-01 4 83279847 83279847 C G HNRNPD Missense_Mutation p.E196Q 0.37 deleterious(0) probably_damaging(0.93) TCGA-BA-A4IF-01 5 140558302 140558302 C G PCDHB8 Silent p.V229V 0.22 TCGA-BA-A4IF-01 5 140564100 140564100 G A PCDHB16 Missense_Mutation p.A656T 0.49 deleterious_low_confidence(0.01) benign(0.008) TCGA-BA-A4IF-01 5 150901065 150901065 G A FAT2 Nonsense_Mutation p.Q3697* 0.54 TCGA-BA-A4IF-01 5 176687017 176687017 C T NSD1 Missense_Mutation p.P1665L 0.48 deleterious(0) probably_damaging(1) TCGA-BA-A4IF-01 5 180627055 180627055 C T TRIM7 Silent p.K215K 0.46 TCGA-BA-A4IF-01 5 40832564 40832564 T A RPL37 3'UTR 0.07 TCGA-BA-A4IF-01 5 53751746 53751746 G T HSPB3 Missense_Mutation p.V43L 0.09 tolerated(0.33) benign(0.001) TCGA-BA-A4IF-01 5 71491772 71491772 G A MAP1B Missense_Mutation p.E864K 0.50 benign(0.41) TCGA-BA-A4IF-01 6 111329306 111329307 AG - RPF2 Frame_Shift_Del p.E154Rfs*3 0.11 TCGA-BA-A4IF-01 6 30866962 30866962 G A DDR1 Silent p.P883P 0.18 TCGA-BA-A4IF-01 6 52138596 52138596 G C MCM3 Nonsense_Mutation p.S543* 0.25 TCGA-BA-A4IF-01 6 56501368 56501368 G A DST Missense_Mutation p.T479I 0.26 benign(0.003) TCGA-BA-A4IF-01 6 6174921 6174921 G - F13A1 Frame_Shift_Del p.R547Vfs*30 0.21 TCGA-BA-A4IF-01 6 74190513 74190513 G A MTO1 Silent p.E415E 0.30 TCGA-BA-A4IF-01 6 78172432 78172432 C T HTR1B Missense_Mutation p.R230H 0.18 deleterious(0) possibly_damaging(0.818) TCGA-BA-A4IF-01 6 83905854 83905854 G C RWDD2A Missense_Mutation p.E248Q 0.14 tolerated(0.78) benign(0.057) TCGA-BA-A4IF-01 7 102246402 102246402 C T RASA4 Missense_Mutation p.D111N 0.09 tolerated(0.09) probably_damaging(0.991) TCGA-BA-A4IF-01 7 147183111 147183111 C G CNTNAP2 Nonsense_Mutation p.Y585* 0.09 TCGA-BA-A4IF-01 7 150817147 150817147 G A AGAP3 Missense_Mutation p.R348Q 0.21 deleterious(0.02) benign(0.038) TCGA-BA-A4IF-01 7 151868382 151868382 T C KMT2C Silent p.E3140E 0.18 TCGA-BA-A4IF-01 7 38424508 38424508 C T AMPH Missense_Mutation p.G667R 0.18 deleterious(0) probably_damaging(1) TCGA-BA-A4IF-01 7 4828533 4828533 C - AP5Z1 Frame_Shift_Del p.Q554Rfs*14 0.21 TCGA-BA-A4IF-01 7 56156657 56156657 C T PHKG1 5'UTR 0.12 TCGA-BA-A4IF-01 7 91652205 91652205 G C AKAP9 Missense_Mutation p.E1344Q 0.35 possibly_damaging(0.58) TCGA-BA-A4IF-01 8 143396416 143396416 C T TSNARE1 Missense_Mutation p.R341Q 0.04 tolerated(0.14) benign(0.037) TCGA-BA-A4IF-01 8 19363248 19363248 G A CSGALNACT1 Missense_Mutation p.A33V 0.30 tolerated(0.17) benign(0.354) TCGA-BA-A4IF-01 8 70744247 70744247 G A SLCO5A1 Missense_Mutation p.P221L 0.37 deleterious(0.01) benign(0.196) TCGA-BA-A4IF-01 8 72756257 72756257 C T MSC Missense_Mutation p.D53N 0.20 tolerated_low_confidence(0.19) benign(0.341) TCGA-BA-A4IF-01 8 89053648 89053648 A G MMP16 3'UTR 0.15 TCGA-BA-A4IF-01 9 114411821 114411821 A T DNAJC25 Missense_Mutation p.K193M 0.18 tolerated(0.07) possibly_damaging(0.861) TCGA-BA-A4IF-01 9 119204767 119204767 G A ASTN2 Missense_Mutation p.T1137M 0.13 deleterious(0.03) unknown(0) TCGA-BA-A4IF-01 9 125330260 125330260 C A OR1L8 Missense_Mutation p.R166L 0.22 tolerated(0.08) benign(0.015) TCGA-BA-A4IF-01 9 125618102 125618102 G A RC3H2 Missense_Mutation p.S837F 0.28 deleterious(0) probably_damaging(0.974) TCGA-BA-A4IF-01 9 125618118 125618118 G A RC3H2 Missense_Mutation p.H832Y 0.27 tolerated(1) possibly_damaging(0.838) TCGA-BA-A4IF-01 9 139393350 139393350 C G NOTCH1 Splice_Site p.X2060_splice 0.22 TCGA-BA-A4IF-01 9 21971096 21971096 C A CDKN2A Nonsense_Mutation p.E88* 0.44 TCGA-BA-A4IF-01 9 38396287 38396287 A G ALDH1B1 Missense_Mutation p.Q181R 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-BA-A4IG-01 10 102295856 102295856 G C HIF1AN Missense_Mutation p.Q47H 0.42 tolerated(0.54) benign(0) TCGA-BA-A4IG-01 10 16873292 16873292 G A CUBN Missense_Mutation p.S3496F 0.23 deleterious(0.01) probably_damaging(0.936) TCGA-BA-A4IG-01 10 26463414 26463414 G A MYO3A Silent p.K1407K 0.25 TCGA-BA-A4IG-01 10 55590919 55590919 G A PCDH15 Intron 0.08 TCGA-BA-A4IG-01 11 123847864 123847864 G A OR10S1 Missense_Mutation p.R179C 0.33 deleterious(0.05) benign(0.015) TCGA-BA-A4IG-01 11 26681950 26681950 C T ANO3 Missense_Mutation p.R969W 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BA-A4IG-01 11 31454000 31454000 T A IMMP1L 3'UTR 0.22 TCGA-BA-A4IG-01 11 57583934 57583934 C G CTNND1 3'UTR 0.18 TCGA-BA-A4IG-01 11 69462759 69462759 C G CCND1 Intron 0.14 TCGA-BA-A4IG-01 11 71946742 71946742 G A INPPL1 Missense_Mutation p.E895K 0.35 deleterious(0.01) benign(0.184) TCGA-BA-A4IG-01 12 10223734 10223734 A G CLEC1A 3'UTR 0.36 TCGA-BA-A4IG-01 12 102559554 102559554 T C PARPBP Silent p.Y238Y 0.06 TCGA-BA-A4IG-01 12 102591258 102591258 A C PARPBP 3'Flank 0.23 TCGA-BA-A4IG-01 12 112673334 112673334 G A HECTD4 Missense_Mutation p.A1754V 0.26 possibly_damaging(0.84) TCGA-BA-A4IG-01 12 133327346 133327346 C T ANKLE2 Missense_Mutation p.E244K 0.26 deleterious(0.03) probably_damaging(0.987) TCGA-BA-A4IG-01 12 133327347 133327347 T A ANKLE2 Missense_Mutation p.R243S 0.26 deleterious(0) probably_damaging(0.982) TCGA-BA-A4IG-01 12 29514592 29514592 C T ERGIC2 Silent p.Q120Q 0.27 TCGA-BA-A4IG-01 12 46245425 46245425 C A ARID2 Silent p.T1173T 0.07 TCGA-BA-A4IG-01 12 8077033 8077033 C G SLC2A3 Silent p.T347T 0.16 TCGA-BA-A4IG-01 12 96107023 96107023 C T NTN4 Missense_Mutation p.D320N 0.15 tolerated(0.92) benign(0.116) TCGA-BA-A4IG-01 13 114150217 114150217 A G TMCO3 Silent p.E107E 0.45 TCGA-BA-A4IG-01 13 53624952 53624952 T C OLFM4 3'UTR 0.30 TCGA-BA-A4IG-01 13 95092186 95092186 T C DCT Missense_Mutation p.H542R 0.29 tolerated(0.6) benign(0.001) TCGA-BA-A4IG-01 14 20249099 20249099 C A OR4M1 Silent p.I206I 0.06 TCGA-BA-A4IG-01 14 32560921 32560921 T - ARHGAP5 Frame_Shift_Del p.L350Cfs*4 0.23 TCGA-BA-A4IG-01 14 71205062 71205062 C G MAP3K9 Missense_Mutation p.E582Q 0.17 tolerated(0.11) possibly_damaging(0.781) TCGA-BA-A4IG-01 14 94708174 94708174 A T PPP4R4 Missense_Mutation p.K342N 0.21 deleterious(0.03) possibly_damaging(0.809) TCGA-BA-A4IG-01 15 101464756 101464756 G A LRRK1 5'UTR 0.41 TCGA-BA-A4IG-01 15 41804923 41804923 G C LTK Missense_Mutation p.P114R 0.23 tolerated_low_confidence(0.06) probably_damaging(0.944) TCGA-BA-A4IG-01 15 83735759 83735759 G A BTBD1 Nonsense_Mutation p.Q49* 0.17 TCGA-BA-A4IG-01 15 85399943 85399943 G A ALPK3 Silent p.Q860Q 0.10 TCGA-BA-A4IG-01 16 1838664 1838664 C A NUBP2 Silent p.L255L 0.21 TCGA-BA-A4IG-01 16 23646717 23646717 C T PALB2 Missense_Mutation p.E384K 0.12 tolerated(0.12) benign(0.209) TCGA-BA-A4IG-01 16 2808538 2808538 G C SRRM2 Missense_Mutation p.D195H 0.08 unknown(0) TCGA-BA-A4IG-01 16 31477197 31477197 G T ARMC5 Missense_Mutation p.V631F 0.13 deleterious(0) probably_damaging(0.999) TCGA-BA-A4IG-01 16 48256716 48256716 T C ABCC11 Silent p.E190E 0.26 TCGA-BA-A4IG-01 16 68156551 68156551 G T NFATC3 Silent p.L255L 0.07 TCGA-BA-A4IG-01 16 70806122 70806122 C G VAC14 Intron 0.36 TCGA-BA-A4IG-01 16 72130043 72130043 T A DHX38 5'UTR 0.16 TCGA-BA-A4IG-01 16 74447558 74447558 G C CLEC18B Nonsense_Mutation p.S158* 0.12 TCGA-BA-A4IG-01 16 75263550 75263550 G T BCAR1 Silent p.R870R 0.25 TCGA-BA-A4IG-01 16 85721167 85721167 G C GINS2 Missense_Mutation p.P35R 0.11 deleterious(0) probably_damaging(0.999) TCGA-BA-A4IG-01 17 45924952 45924952 G C SP6 Missense_Mutation p.R282G 0.17 deleterious(0) probably_damaging(0.998) TCGA-BA-A4IG-01 17 61910996 61910996 A G SMARCD2 Missense_Mutation p.F423S 0.17 deleterious(0.04) probably_damaging(0.986) TCGA-BA-A4IG-01 17 7330242 7330242 G A C17orf74 Nonsense_Mutation p.W311* 0.16 TCGA-BA-A4IG-01 17 76133869 76133869 C T TMC8 Silent p.F441F 0.13 TCGA-BA-A4IG-01 17 78293223 78293223 A T RNF213 Intron 0.12 TCGA-BA-A4IG-01 17 8383508 8383508 G T MYH10 Silent p.V1839V 0.16 TCGA-BA-A4IG-01 17 8633486 8633486 C G CCDC42 Missense_Mutation p.E305Q 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-BA-A4IG-01 18 55361887 55361887 A G ATP8B1 Missense_Mutation p.I319T 0.23 deleterious(0) possibly_damaging(0.882) TCGA-BA-A4IG-01 18 56246469 56246469 C G ALPK2 Missense_Mutation p.E513D 0.05 tolerated(0.06) possibly_damaging(0.678) TCGA-BA-A4IG-01 18 67406319 67406319 G T DOK6 Nonsense_Mutation p.E240* 0.30 TCGA-BA-A4IG-01 18 9550380 9550380 G C PPP4R1 Missense_Mutation p.L770V 0.08 deleterious(0.04) benign(0.347) TCGA-BA-A4IG-01 19 12384064 12384064 G C ZNF44 Missense_Mutation p.P384A 0.21 deleterious(0) probably_damaging(0.994) TCGA-BA-A4IG-01 19 15728889 15728889 G A AD000091.2 5'Flank 0.27 TCGA-BA-A4IG-01 19 19338281 19338281 C T NCAN Missense_Mutation p.P618S 0.07 tolerated(0.24) benign(0.003) TCGA-BA-A4IG-01 19 19675809 19675809 C T PBX4 Silent p.T286T 0.08 TCGA-BA-A4IG-01 19 2216347 2216347 C T DOT1L Missense_Mutation p.P664L 0.24 tolerated_low_confidence(0.05) probably_damaging(0.996) TCGA-BA-A4IG-01 19 44778518 44778518 T C ZNF233 Missense_Mutation p.C569R 0.06 deleterious(0) probably_damaging(0.991) TCGA-BA-A4IG-01 19 47588319 47588319 G A ZC3H4 Silent p.D367D 0.04 TCGA-BA-A4IG-01 19 4817854 4817854 G C TICAM1 Missense_Mutation p.P179R 0.13 deleterious(0) probably_damaging(0.974) TCGA-BA-A4IG-01 19 49225236 49225236 G A RASIP1 Missense_Mutation p.T856I 0.28 tolerated(0.07) possibly_damaging(0.857) TCGA-BA-A4IG-01 19 49994515 49994515 G C RPL13A Intron 0.20 TCGA-BA-A4IG-01 19 53270816 53270816 T A ZNF600 Nonsense_Mutation p.K65* 0.31 TCGA-BA-A4IG-01 19 55301560 55301560 C A CTB-61M7.1 RNA 0.12 TCGA-BA-A4IG-01 19 58198984 58198984 T A ZNF551 Nonsense_Mutation p.Y447* 0.27 TCGA-BA-A4IG-01 19 7550722 7550722 A C PEX11G Splice_Site p.X83_splice 0.06 TCGA-BA-A4IG-01 19 7585034 7585034 G C ZNF358 Missense_Mutation p.Q302H 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-BA-A4IG-01 19 8922717 8922717 T A ZNF558 Missense_Mutation p.K150I 0.30 deleterious(0) benign(0.073) TCGA-BA-A4IG-01 1 111772372 111772372 T C CHI3L2 Intron 0.19 TCGA-BA-A4IG-01 1 11254561 11254561 T A ANGPTL7 Missense_Mutation p.V239D 0.07 tolerated(0.27) benign(0.112) TCGA-BA-A4IG-01 1 152277984 152277984 G A FLG Silent p.H3126H 0.22 TCGA-BA-A4IG-01 1 156564800 156564800 C G GPATCH4 3'Flank 0.27 TCGA-BA-A4IG-01 1 156756871 156756871 A G PRCC Missense_Mutation p.S330G 0.13 tolerated(0.11) possibly_damaging(0.704) TCGA-BA-A4IG-01 1 18149579 18149579 C T ACTL8 Nonsense_Mutation p.Q26* 0.26 TCGA-BA-A4IG-01 1 197073087 197073087 C G ASPM Missense_Mutation p.R1765T 0.22 deleterious(0.02) probably_damaging(0.978) TCGA-BA-A4IG-01 1 205760580 205760580 G T SLC41A1 3'UTR 0.17 TCGA-BA-A4IG-01 1 213068751 213068751 A C FLVCR1 3'UTR 0.44 TCGA-BA-A4IG-01 1 228558406 228558406 C - OBSCN Frame_Shift_Del p.F7689Sfs*20 0.11 TCGA-BA-A4IG-01 1 241798371 241798381 AAATCAATATT - CHML Frame_Shift_Del p.N230Gfs*13 0.36 TCGA-BA-A4IG-01 1 35936496 35936496 C A KIAA0319L Missense_Mutation p.G361W 0.09 deleterious(0.02) possibly_damaging(0.886) TCGA-BA-A4IG-01 1 36282503 36282503 C T AGO4 Nonsense_Mutation p.Q14* 0.11 TCGA-BA-A4IG-01 1 36926340 36926340 T C MRPS15 Missense_Mutation p.K113R 0.30 tolerated(0.16) benign(0.015) TCGA-BA-A4IG-01 1 45407265 45407265 C T EIF2B3 Missense_Mutation p.A123T 0.12 tolerated(0.47) benign(0.005) TCGA-BA-A4IG-01 1 65304245 65304245 T G JAK1 Missense_Mutation p.E957A 0.24 deleterious(0) probably_damaging(1) TCGA-BA-A4IG-01 1 71477748 71477748 A C PTGER3 Intron 0.19 TCGA-BA-A4IG-01 1 82433849 82433849 A C LPHN2 Missense_Mutation p.N813T 0.35 deleterious(0) probably_damaging(0.998) TCGA-BA-A4IG-01 1 89607325 89607325 C T GBP7 Missense_Mutation p.E458K 0.14 tolerated(0.08) benign(0.185) TCGA-BA-A4IG-01 20 33872144 33872144 C G EIF6 Intron 0.16 TCGA-BA-A4IG-01 20 42088499 42088499 A T SRSF6 Missense_Mutation p.E115D 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-BA-A4IG-01 20 43379120 43379120 G C KCNK15 Missense_Mutation p.E212Q 0.13 tolerated(0.33) possibly_damaging(0.803) TCGA-BA-A4IG-01 20 43386398 43386398 C G RIMS4 Missense_Mutation p.G123R 0.06 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-BA-A4IG-01 20 44581078 44581078 C T ZNF335 Missense_Mutation p.G966E 0.23 tolerated(0.27) benign(0.005) TCGA-BA-A4IG-01 20 45130958 45130958 G C ZNF334 Missense_Mutation p.F340L 0.06 tolerated(0.33) possibly_damaging(0.898) TCGA-BA-A4IG-01 20 8639305 8639305 A C PLCB1 Missense_Mutation p.Q272H 0.30 tolerated(0.07) benign(0.126) TCGA-BA-A4IG-01 21 27269970 27269970 T C APP Missense_Mutation p.N660S 0.25 tolerated(0.45) benign(0.074) TCGA-BA-A4IG-01 22 19363199 19363199 G A HIRA Missense_Mutation p.P577L 0.11 deleterious(0.01) benign(0.125) TCGA-BA-A4IG-01 22 39427873 39427873 A G APOBEC3D Missense_Mutation p.T313A 0.17 tolerated(0.53) benign(0.109) TCGA-BA-A4IG-01 2 109382596 109382596 A G RANBP2 Silent p.E1867E 0.29 TCGA-BA-A4IG-01 2 129026418 129026418 C T HS6ST1 Missense_Mutation p.R185Q 0.21 deleterious(0) probably_damaging(0.928) TCGA-BA-A4IG-01 2 149806902 149806902 C A KIF5C Silent p.T298T 0.14 TCGA-BA-A4IG-01 2 15496481 15496481 G A NBAS Missense_Mutation p.R1293C 0.27 tolerated(0.09) benign(0.129) TCGA-BA-A4IG-01 2 165796058 165796058 C G SLC38A11 Missense_Mutation p.E91Q 0.09 tolerated(0.18) benign(0.015) TCGA-BA-A4IG-01 2 178082558 178082558 G A HNRNPA3 Missense_Mutation p.G316R 0.21 deleterious(0.05) unknown(0) TCGA-BA-A4IG-01 2 179413855 179413855 G A TTN Missense_Mutation p.T30833I 0.26 TCGA-BA-A4IG-01 2 179593405 179593405 C A TTN Silent p.V6416V 0.36 TCGA-BA-A4IG-01 2 240985103 240985103 C T OR6B3 Silent p.P129P 0.43 TCGA-BA-A4IG-01 2 29940550 29940550 C G ALK Missense_Mutation p.L227F 0.10 deleterious_low_confidence(0.04) benign(0.001) TCGA-BA-A4IG-01 2 61181120 61181120 T - PUS10 Frame_Shift_Del p.I380Lfs*21 0.16 TCGA-BA-A4IG-01 2 74454961 74454961 G A SLC4A5 Silent p.G964G 0.17 TCGA-BA-A4IG-01 2 75720529 75720529 G A EVA1A Missense_Mutation p.R98W 0.29 deleterious(0.01) probably_damaging(1) TCGA-BA-A4IG-01 2 80530545 80530545 G C LRRTM1 Missense_Mutation p.R134G 0.08 tolerated(0.4) probably_damaging(0.995) TCGA-BA-A4IG-01 2 89197097 89197097 G A IGKV5-2 Missense_Mutation p.D48N 0.28 tolerated(0.31) benign(0.36) TCGA-BA-A4IG-01 3 11340154 11340167 TAATAGGCAAGAAA - ATG7 Splice_Site 0.17 TCGA-BA-A4IG-01 3 113723568 113723568 C T KIAA1407 Missense_Mutation p.E632K 0.15 tolerated(0.22) benign(0.017) TCGA-BA-A4IG-01 3 119153706 119153706 G C TMEM39A Missense_Mutation p.P379R 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A4IG-01 3 122420291 122420291 G A PARP14 Missense_Mutation p.E964K 0.20 deleterious(0) benign(0.012) TCGA-BA-A4IG-01 3 132249931 132249931 A - DNAJC13 Frame_Shift_Del p.Y2206Tfs*27 0.09 TCGA-BA-A4IG-01 3 154802000 154802000 C T MME Missense_Mutation p.T15I 0.05 tolerated(0.1) benign(0.003) TCGA-BA-A4IG-01 3 15492835 15492835 C G COLQ 3'UTR 0.14 TCGA-BA-A4IG-01 3 157841746 157841746 G T RSRC1 Missense_Mutation p.V96F 0.11 deleterious_low_confidence(0.04) unknown(0) TCGA-BA-A4IG-01 3 160156358 160156358 G A TRIM59 Missense_Mutation p.T205M 0.46 deleterious(0.02) possibly_damaging(0.485) TCGA-BA-A4IG-01 3 169940505 169940505 C T PRKCI Silent p.G16G 0.23 TCGA-BA-A4IG-01 3 180337659 180337659 G C CCDC39 Missense_Mutation p.Q700E 0.22 tolerated(0.13) benign(0.098) TCGA-BA-A4IG-01 3 182665102 182665102 T G DCUN1D1 Silent p.I208I 0.09 TCGA-BA-A4IG-01 3 184033361 184033361 C G EIF4G1 5'UTR 0.29 TCGA-BA-A4IG-01 3 189611999 189611999 T G TP63 Missense_Mutation p.L584R 0.11 deleterious(0) probably_damaging(0.999) TCGA-BA-A4IG-01 3 52022615 52022615 G A ACY1 Missense_Mutation p.D333N 0.12 tolerated(0.15) benign(0.008) TCGA-BA-A4IG-01 3 52263740 52263740 G A TLR9 Silent p.S134S 0.16 TCGA-BA-A4IG-01 3 52469793 52469793 G T SEMA3G Nonsense_Mutation p.Y725* 0.25 TCGA-BA-A4IG-01 3 55108364 55108364 A G CACNA2D3 3'UTR 0.15 TCGA-BA-A4IG-01 3 56766330 56766330 G A ARHGEF3 Silent p.D420D 0.22 TCGA-BA-A4IG-01 4 3031042 3031042 A T GRK4 Missense_Mutation p.K392I 0.28 deleterious(0) probably_damaging(0.941) TCGA-BA-A4IG-01 4 69096989 69096989 G A TMPRSS11B Silent p.G206G 0.13 TCGA-BA-A4IG-01 5 123983485 123983485 C A ZNF608 Silent p.L864L 0.14 TCGA-BA-A4IG-01 5 131554331 131554331 G T P4HA2 5'UTR 0.16 TCGA-BA-A4IG-01 5 132096852 132096852 C G SEPT8 Missense_Mutation p.E356D 0.11 deleterious(0.03) probably_damaging(0.992) TCGA-BA-A4IG-01 5 34033477 34033477 G A C1QTNF3 Nonsense_Mutation p.R168* 0.23 TCGA-BA-A4IG-01 5 37363995 37363995 C T NUP155 Silent p.E129E 0.43 TCGA-BA-A4IG-01 5 65350591 65350591 A T ERBB2IP Missense_Mutation p.I1149F 0.17 deleterious(0.04) benign(0.077) TCGA-BA-A4IG-01 6 133014383 133014383 G T VNN1 Silent p.T202T 0.06 TCGA-BA-A4IG-01 6 158957802 158957802 C G TMEM181 Silent p.L108L 0.19 TCGA-BA-A4IG-01 6 18122653 18122653 C T NHLRC1 Missense_Mutation p.R62H 0.15 tolerated(0.12) probably_damaging(0.973) TCGA-BA-A4IG-01 6 24848286 24848286 C T FAM65B Silent p.P348P 0.11 TCGA-BA-A4IG-01 6 31907070 31907070 A G CFB Missense_Mutation p.I245V 0.12 tolerated(0.27) benign(0.088) TCGA-BA-A4IG-01 6 41130791 41130791 G C TREM2 Silent p.L10L 0.22 TCGA-BA-A4IG-01 6 44413455 44413455 A T CDC5L Missense_Mutation p.I719F 0.20 deleterious(0) possibly_damaging(0.467) TCGA-BA-A4IG-01 6 70082307 70082307 T A BAI3 Missense_Mutation p.S1417T 0.23 tolerated(0.5) probably_damaging(0.952) TCGA-BA-A4IG-01 7 140110835 140110835 G A RAB19 Intron 0.18 TCGA-BA-A4IG-01 7 14647094 14647094 C A DGKB Missense_Mutation p.Q467H 0.17 deleterious(0) probably_damaging(0.999) TCGA-BA-A4IG-01 7 50514663 50514663 T C FIGNL1 Missense_Mutation p.N108S 0.37 tolerated(0.19) benign(0.014) TCGA-BA-A4IG-01 7 56130845 56130845 A G CCT6A 3'UTR 0.24 TCGA-BA-A4IG-01 7 5922148 5922148 A T OCM Missense_Mutation p.K29I 0.25 deleterious(0.03) possibly_damaging(0.609) TCGA-BA-A4IG-01 7 63720710 63720710 A G ZNF679 Missense_Mutation p.N51D 0.22 deleterious(0) probably_damaging(0.996) TCGA-BA-A4IG-01 7 77221564 77221564 A C PTPN12 Missense_Mutation p.K161N 0.30 tolerated(0.1) benign(0.017) TCGA-BA-A4IG-01 8 100779109 100779109 C T VPS13B Silent p.I2411I 0.08 TCGA-BA-A4IG-01 8 124346146 124346146 C T ATAD2 Silent p.P1150P 0.39 TCGA-BA-A4IG-01 8 22863632 22863632 C T RHOBTB2 Silent p.V174V 0.09 TCGA-BA-A4IG-01 8 43173690 43173690 G C POTEA RNA 0.51 TCGA-BA-A4IG-01 8 56708566 56708566 G C TGS1 Missense_Mutation p.R466P 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A4IG-01 8 66619352 66619352 G C MTFR1 Missense_Mutation p.D209H 0.16 deleterious(0) probably_damaging(0.982) TCGA-BA-A4IG-01 8 67012281 67012281 A G DNAJC5B 3'UTR 0.26 TCGA-BA-A4IG-01 8 72975102 72975102 C A TRPA1 Missense_Mutation p.V247L 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-BA-A4IG-01 8 87641148 87641148 T C CNGB3 Silent p.L493L 0.06 TCGA-BA-A4IG-01 8 92083370 92083370 A T OTUD6B Missense_Mutation p.K59N 0.17 deleterious(0.03) possibly_damaging(0.864) TCGA-BA-A4IG-01 9 114500747 114500747 T A C9orf84 Silent p.I346I 0.24 TCGA-BA-A4IG-01 9 134526228 134526228 G A RAPGEF1 Missense_Mutation p.S58F 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-BA-A4IG-01 9 136227943 136227943 C G SURF2 Silent p.G233G 0.06 TCGA-BA-A4IG-01 9 33943557 33943560 AACC - UBAP2 Frame_Shift_Del p.G525Qfs*7 0.17 TCGA-BA-A4IG-01 9 35555103 35555103 G C RUSC2 Missense_Mutation p.Q687H 0.26 deleterious(0.01) benign(0.03) TCGA-BA-A4IG-01 9 5769097 5769097 G A KIAA1432 Missense_Mutation p.E1089K 0.09 tolerated(0.05) benign(0.064) TCGA-BA-A4IG-01 9 95027389 95027389 T G IARS Missense_Mutation p.I508L 0.21 deleterious(0.01) possibly_damaging(0.788) TCGA-BA-A4IG-01 X 117538393 117538393 G C WDR44 Missense_Mutation p.S456T 0.28 tolerated(0.1) benign(0.119) TCGA-BA-A4IG-01 X 134156510 134156510 G A FAM127C 5'UTR 0.27 TCGA-BA-A4IG-01 X 75395436 75395436 A G PBDC1 Silent p.E95E 0.43 TCGA-BA-A4IG-01 Y 21761644 21761644 A T RP11-576C2.1 3'Flank 0.55 TCGA-BA-A4IH-01 10 104164758 104164758 T A PSD Missense_Mutation p.S818C 0.36 deleterious(0) probably_damaging(0.961) TCGA-BA-A4IH-01 11 117780594 117780594 C T TMPRSS13 Missense_Mutation p.G346S 0.08 tolerated(0.1) benign(0.052) TCGA-BA-A4IH-01 11 134253908 134253908 G A B3GAT1 Missense_Mutation p.P96L 0.65 tolerated(0.65) probably_damaging(0.962) TCGA-BA-A4IH-01 11 55541549 55541549 C A OR5D13 Missense_Mutation p.S212R 0.36 deleterious(0) probably_damaging(0.965) TCGA-BA-A4IH-01 11 55658999 55658999 G T TRIM51 Missense_Mutation p.G417V 0.43 tolerated(0.08) possibly_damaging(0.772) TCGA-BA-A4IH-01 11 55904442 55904442 G T OR8J3 Missense_Mutation p.F251L 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-BA-A4IH-01 12 123435004 123435004 A T ABCB9 Missense_Mutation p.I237N 0.71 deleterious(0) possibly_damaging(0.739) TCGA-BA-A4IH-01 12 13102633 13102633 G A GPRC5D Missense_Mutation p.P229L 0.28 tolerated(0.1) possibly_damaging(0.544) TCGA-BA-A4IH-01 12 14766109 14766109 T A GUCY2C Missense_Mutation p.K1055I 0.06 deleterious_low_confidence(0.04) benign(0.258) TCGA-BA-A4IH-01 12 5155093 5155093 G A KCNA5 Missense_Mutation p.V594M 0.57 tolerated_low_confidence(0.15) probably_damaging(0.998) TCGA-BA-A4IH-01 12 64195968 64195968 T C TMEM5 Missense_Mutation p.Y176H 0.13 tolerated(0.12) benign(0.012) TCGA-BA-A4IH-01 12 91502249 91502249 G A LUM Missense_Mutation p.R170W 0.48 deleterious(0.03) benign(0.105) TCGA-BA-A4IH-01 14 23524310 23524310 G A CDH24 Missense_Mutation p.L152F 0.61 deleterious(0.01) possibly_damaging(0.762) TCGA-BA-A4IH-01 14 94008911 94008911 G A UNC79 Missense_Mutation p.D365N 0.62 deleterious(0.02) probably_damaging(0.998) TCGA-BA-A4IH-01 15 101598236 101598236 G T LRRK1 Silent p.P1523P 0.35 TCGA-BA-A4IH-01 15 40330522 40330522 C A SRP14 Silent p.L57L 0.38 TCGA-BA-A4IH-01 17 31082577 31082577 G C MYO1D Missense_Mutation p.T467S 0.47 deleterious(0.05) possibly_damaging(0.665) TCGA-BA-A4IH-01 19 14000402 14000402 G A C19orf57 Missense_Mutation p.P423S 0.23 tolerated(0.47) benign(0) TCGA-BA-A4IH-01 19 15230293 15230293 T C ILVBL Missense_Mutation p.K284E 0.14 tolerated(0.14) benign(0.148) TCGA-BA-A4IH-01 19 16528778 16528785 TCCGAAGG - EPS15L1 Frame_Shift_Del p.P361Efs*24 0.82 TCGA-BA-A4IH-01 19 17651299 17651299 C T FAM129C Missense_Mutation p.L391F 0.86 tolerated(0.38) probably_damaging(0.999) TCGA-BA-A4IH-01 19 23406747 23406747 C T ZNF724P Silent p.L100L 0.60 TCGA-BA-A4IH-01 19 57642321 57642321 G T USP29 Missense_Mutation p.A760S 0.35 tolerated(0.1) benign(0.331) TCGA-BA-A4IH-01 1 169578760 169578760 G C SELP Missense_Mutation p.P439A 0.10 tolerated(0.18) possibly_damaging(0.493) TCGA-BA-A4IH-01 1 202092407 202092407 C T GPR37L1 Silent p.L106L 0.47 TCGA-BA-A4IH-01 1 22141024 22141024 C T LDLRAD2 Silent p.P73P 0.42 TCGA-BA-A4IH-01 1 248366772 248366772 C A OR2M3 Missense_Mutation p.L135I 0.40 deleterious(0.03) possibly_damaging(0.687) TCGA-BA-A4IH-01 1 33272139 33272139 C T YARS Missense_Mutation p.V152M 0.24 deleterious(0) probably_damaging(0.999) TCGA-BA-A4IH-01 1 35453087 35453087 C T ZMYM6 Missense_Mutation p.S1199N 0.43 tolerated_low_confidence(1) benign(0) TCGA-BA-A4IH-01 20 17475195 17475195 C T BFSP1 Missense_Mutation p.G508S 0.06 tolerated(0.67) benign(0.011) TCGA-BA-A4IH-01 22 36702000 36702000 A T MYH9 Missense_Mutation p.V712E 0.36 probably_damaging(0.953) TCGA-BA-A4IH-01 22 46733801 46733801 C T TRMU Nonsense_Mutation p.Q70* 0.15 TCGA-BA-A4IH-01 2 109357023 109357023 A T RANBP2 Silent p.G287G 0.41 TCGA-BA-A4IH-01 2 209353868 209353868 C A PTH2R Missense_Mutation p.S403Y 0.50 deleterious(0) probably_damaging(1) TCGA-BA-A4IH-01 2 21236404 21236404 C T APOB Missense_Mutation p.D1282N 0.39 probably_damaging(0.996) TCGA-BA-A4IH-01 2 29274988 29274988 T G FAM179A 3'UTR 0.46 TCGA-BA-A4IH-01 2 69736466 69736466 T C AAK1 Missense_Mutation p.I635V 0.46 tolerated(0.1) possibly_damaging(0.722) TCGA-BA-A4IH-01 3 123694238 123694238 G A ROPN1 Silent p.S128S 0.21 TCGA-BA-A4IH-01 3 48677542 48677542 G A CELSR3 Missense_Mutation p.P3159L 0.49 tolerated_low_confidence(0.17) benign(0.018) TCGA-BA-A4IH-01 3 49569031 49569031 C G DAG1 Missense_Mutation p.P363A 0.27 tolerated(0.12) possibly_damaging(0.648) TCGA-BA-A4IH-01 4 119947910 119947910 C T SYNPO2 Missense_Mutation p.T129I 0.35 tolerated(0.07) benign(0.113) TCGA-BA-A4IH-01 4 134071181 134071181 C A PCDH10 5'UTR 0.41 TCGA-BA-A4IH-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.48 deleterious(0.01) possibly_damaging(0.594) TCGA-BA-A4IH-01 4 54967865 54967865 C T GSX2 Missense_Mutation p.R231W 0.34 deleterious(0) probably_damaging(0.998) TCGA-BA-A4IH-01 4 85729569 85729569 G A WDFY3 Missense_Mutation p.R783C 0.35 deleterious(0.01) benign(0.003) TCGA-BA-A4IH-01 5 140553474 140553474 C T PCDHB7 Missense_Mutation p.T353I 0.32 tolerated_low_confidence(0.21) benign(0.007) TCGA-BA-A4IH-01 5 140732056 140732056 T A PCDHGB1 Silent p.T743T 0.16 TCGA-BA-A4IH-01 5 98192068 98192068 G A CHD1 3'UTR 0.38 TCGA-BA-A4IH-01 6 119345176 119345176 T C FAM184A Missense_Mutation p.D321G 0.39 deleterious(0.04) benign(0.018) TCGA-BA-A4IH-01 6 127898604 127898604 C G C6orf58 Missense_Mutation p.L92V 0.44 tolerated(0.08) probably_damaging(0.989) TCGA-BA-A4IH-01 6 36766264 36766264 C A CPNE5 Missense_Mutation p.V99F 0.26 deleterious(0) probably_damaging(0.95) TCGA-BA-A4IH-01 6 36979565 36979565 C G FGD2 Missense_Mutation p.I154M 0.33 deleterious(0) probably_damaging(0.997) TCGA-BA-A4IH-01 7 99022765 99022765 G A ATP5J2-PTCD1 Missense_Mutation p.R513W 0.09 deleterious(0) probably_damaging(0.999) TCGA-BA-A4IH-01 7 99277587 99277587 C T CYP3A5 5'UTR 0.10 TCGA-BA-A4IH-01 8 21843168 21843168 G T XPO7 Nonsense_Mutation p.E515* 0.42 TCGA-BA-A4IH-01 9 106888954 106888954 G T SMC2 Missense_Mutation p.E828D 0.47 deleterious(0.03) benign(0.076) TCGA-BA-A4IH-01 9 108397458 108397458 G A FKTN Silent p.T433T 0.48 TCGA-BA-A4IH-01 9 35057080 35057080 G A VCP 3'UTR 0.06 TCGA-BA-A4II-01 10 33468838 33468838 C G NRP1 3'UTR 0.21 TCGA-BA-A4II-01 10 61592365 61592365 T C CCDC6 Missense_Mutation p.Q167R 0.12 deleterious(0) probably_damaging(0.995) TCGA-BA-A4II-01 11 109294474 109294474 G T C11orf87 Missense_Mutation p.G39C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-BA-A4II-01 11 55927156 55927156 A T OR8K5 Missense_Mutation p.I213K 0.11 deleterious_low_confidence(0.01) benign(0.231) TCGA-BA-A4II-01 11 58723306 58723306 C T GLYATL1 Nonsense_Mutation p.R270* 0.07 TCGA-BA-A4II-01 11 62300566 62300566 T C AHNAK Silent p.V441V 0.12 TCGA-BA-A4II-01 11 64418041 64418041 G C NRXN2 Silent p.V996V 0.06 TCGA-BA-A4II-01 11 74546712 74546712 C A RNF169 Nonsense_Mutation p.S355* 0.07 TCGA-BA-A4II-01 11 75902893 75902893 C T WNT11 Missense_Mutation p.R202H 0.07 tolerated(0.14) possibly_damaging(0.516) TCGA-BA-A4II-01 12 129558470 129558470 C T TMEM132D Missense_Mutation p.D1084N 0.14 tolerated(0.06) benign(0.025) TCGA-BA-A4II-01 12 130185156 130185156 G A TMEM132D Missense_Mutation p.A56V 0.16 deleterious(0) possibly_damaging(0.527) TCGA-BA-A4II-01 12 41966828 41966828 G T PDZRN4 Silent p.P749P 0.13 TCGA-BA-A4II-01 12 52881537 52881537 G A KRT6A Silent p.T554T 0.12 TCGA-BA-A4II-01 12 70946775 70946775 C T PTPRB Silent p.Q1723Q 0.16 TCGA-BA-A4II-01 13 100637931 100637931 G C ZIC2 Missense_Mutation p.V532L 0.16 deleterious_low_confidence(0) unknown(0) TCGA-BA-A4II-01 13 21370992 21370992 C T XPO4 Missense_Mutation p.E843K 0.27 tolerated(0.49) benign(0.244) TCGA-BA-A4II-01 13 25670474 25670474 G A PABPC3 Silent p.L46L 0.12 TCGA-BA-A4II-01 14 106110438 106110438 G A IGHG2 Missense_Mutation p.R100C 0.23 tolerated(0.14) benign(0.011) TCGA-BA-A4II-01 14 21162089 21162089 G A ANG Silent p.A122A 0.22 TCGA-BA-A4II-01 14 92471331 92471331 T A TRIP11 Missense_Mutation p.T997S 0.04 tolerated(0.07) benign(0.094) TCGA-BA-A4II-01 15 25959070 25959070 C T ATP10A Missense_Mutation p.D699N 0.23 deleterious(0) probably_damaging(0.987) TCGA-BA-A4II-01 15 45401151 45401151 C A DUOX2 Splice_Site p.X412_splice 0.18 TCGA-BA-A4II-01 16 1811306 1811306 G A MAPK8IP3 Silent p.S512S 0.17 TCGA-BA-A4II-01 16 29706251 29706251 G A QPRT Missense_Mutation p.A94T 0.10 tolerated(0.12) possibly_damaging(0.788) TCGA-BA-A4II-01 16 30793014 30793014 G A ZNF629 3'UTR 0.10 TCGA-BA-A4II-01 16 48232154 48232154 C A ABCC11 Missense_Mutation p.L705F 0.14 deleterious(0.05) benign(0.417) TCGA-BA-A4II-01 16 53279747 53279747 C G CHD9 Missense_Mutation p.P1147A 0.23 probably_damaging(0.999) TCGA-BA-A4II-01 16 84208329 84208329 G C DNAAF1 Splice_Site p.X566_splice 0.09 TCGA-BA-A4II-01 16 849043 849046 TCTT - GNG13 Frame_Shift_Del p.K11Rfs*24 0.18 TCGA-BA-A4II-01 17 56385249 56385249 G C BZRAP1 Silent p.P1595P 0.19 TCGA-BA-A4II-01 17 62781406 62781406 G A hsa-mir-6080 5'Flank 0.12 TCGA-BA-A4II-01 17 7577111 7577111 G T TP53 Missense_Mutation p.A276D 0.31 deleterious(0) probably_damaging(0.992) TCGA-BA-A4II-01 18 5394709 5394709 C A EPB41L3 Missense_Mutation p.E1079D 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-BA-A4II-01 18 673029 673029 C G TYMS 3'UTR 0.13 TCGA-BA-A4II-01 19 10793234 10793234 C G ILF3 Missense_Mutation p.P468A 0.07 deleterious(0.05) possibly_damaging(0.481) TCGA-BA-A4II-01 19 1399013 1399013 G A GAMT Missense_Mutation p.R158C 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-BA-A4II-01 19 19218754 19218754 G A SLC25A42 Silent p.L183L 0.18 TCGA-BA-A4II-01 19 19414163 19414163 G A SUGP1 Nonsense_Mutation p.Q253* 0.17 TCGA-BA-A4II-01 19 21991630 21991630 A T ZNF43 Nonsense_Mutation p.C403* 0.11 TCGA-BA-A4II-01 19 35422786 35422786 G C ZNF30 Missense_Mutation p.E17Q 0.24 tolerated(0.33) benign(0.005) TCGA-BA-A4II-01 19 36216487 36216487 A T KMT2B Missense_Mutation p.K1250N 0.16 possibly_damaging(0.61) TCGA-BA-A4II-01 19 37642616 37642616 C T ZNF585A Missense_Mutation p.D674N 0.14 tolerated(0.22) benign(0.014) TCGA-BA-A4II-01 19 3977871 3977871 G A EEF2 Silent p.Y671Y 0.14 TCGA-BA-A4II-01 19 46021057 46021057 C T VASP Missense_Mutation p.R48C 0.10 deleterious(0.01) unknown(0) TCGA-BA-A4II-01 19 46281006 46281006 G A DMPK Silent p.F277F 0.16 TCGA-BA-A4II-01 19 46891878 46891878 G T PPP5C Missense_Mutation p.L415F 0.13 deleterious(0.03) probably_damaging(0.952) TCGA-BA-A4II-01 19 50099945 50099945 G A PRR12 Missense_Mutation p.A785T 0.15 possibly_damaging(0.682) TCGA-BA-A4II-01 19 53994161 53994161 T A ZNF813 Missense_Mutation p.N225K 0.11 deleterious(0.05) benign(0.133) TCGA-BA-A4II-01 19 54678110 54678111 - A MBOAT7 Frame_Shift_Ins p.M349Ifs*60 0.09 TCGA-BA-A4II-01 19 58213858 58213858 T A ZNF154 Missense_Mutation p.R153S 0.20 tolerated(0.07) benign(0.082) TCGA-BA-A4II-01 19 758045 758045 C T MISP Missense_Mutation p.R367W 0.12 deleterious(0) probably_damaging(0.994) TCGA-BA-A4II-01 1 149877520 149877520 C T SV2A Missense_Mutation p.A653T 0.18 tolerated(0.43) possibly_damaging(0.788) TCGA-BA-A4II-01 1 155233126 155233126 C A CLK2 Missense_Mutation p.E460D 0.06 deleterious(0.03) benign(0.15) TCGA-BA-A4II-01 1 168074041 168074041 G T GPR161 Silent p.L36L 0.21 TCGA-BA-A4II-01 1 175372559 175372559 G A TNR Silent p.S231S 0.12 TCGA-BA-A4II-01 1 179783344 179783344 C T FAM163A 3'UTR 0.08 TCGA-BA-A4II-01 1 190250835 190250835 T A BRINP3 Missense_Mutation p.R94S 0.21 deleterious(0.01) possibly_damaging(0.863) TCGA-BA-A4II-01 1 196250051 196250051 G T KCNT2 Missense_Mutation p.S950Y 0.11 deleterious(0) possibly_damaging(0.898) TCGA-BA-A4II-01 1 197552285 197552285 C - DENND1B Frame_Shift_Del p.K382Nfs*11 0.19 TCGA-BA-A4II-01 1 204228778 204228778 G A PLEKHA6 Silent p.A205A 0.12 TCGA-BA-A4II-01 1 234743476 234743476 T C IRF2BP2 Missense_Mutation p.M391V 0.10 tolerated(0.27) benign(0) TCGA-BA-A4II-01 1 237713905 237713905 A G RYR2 Missense_Mutation p.K1043R 0.23 benign(0.317) TCGA-BA-A4II-01 1 241798408 241798408 G A CHML Nonsense_Mutation p.Q221* 0.20 TCGA-BA-A4II-01 1 247587832 247587832 G C NLRP3 Missense_Mutation p.D363H 0.16 deleterious(0.04) benign(0.03) TCGA-BA-A4II-01 1 35320635 35320635 G C SMIM12 3'UTR 0.14 TCGA-BA-A4II-01 1 75038309 75038309 C A C1orf173 Missense_Mutation p.V1029L 0.14 tolerated(0.15) benign(0.085) TCGA-BA-A4II-01 1 99762293 99762293 G T LPPR4 Splice_Site p.X137_splice 0.07 TCGA-BA-A4II-01 20 3211669 3211669 T C SLC4A11 Missense_Mutation p.I403V 0.11 tolerated(0.15) benign(0.041) TCGA-BA-A4II-01 20 32379114 32379114 G A ZNF341 Missense_Mutation p.E779K 0.15 tolerated_low_confidence(0.1) benign(0.009) TCGA-BA-A4II-01 20 62121936 62121936 C T EEF1A2 Missense_Mutation p.G309S 0.11 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BA-A4II-01 21 34110651 34110651 A T PAXBP1 Intron 0.15 TCGA-BA-A4II-01 22 22843036 22843036 G C ZNF280B Missense_Mutation p.Q230E 0.30 deleterious(0.05) benign(0.028) TCGA-BA-A4II-01 22 29130641 29130641 G T CHEK2 Silent p.G23G 0.29 TCGA-BA-A4II-01 2 135763005 135763005 C T MAP3K19 Missense_Mutation p.G79S 0.14 deleterious(0.01) benign(0.382) TCGA-BA-A4II-01 2 136743008 136743008 G A DARS Nonsense_Mutation p.Q11* 0.11 TCGA-BA-A4II-01 2 138169279 138169279 A G THSD7B Silent p.G932G 0.13 TCGA-BA-A4II-01 2 206480461 206480461 G T PARD3B Missense_Mutation p.R1119L 0.13 deleterious(0) benign(0.256) TCGA-BA-A4II-01 2 211019032 211019032 T A KANSL1L Missense_Mutation p.H92L 0.08 tolerated(0.4) benign(0.023) TCGA-BA-A4II-01 2 232262479 232262479 G A B3GNT7 Missense_Mutation p.A17T 0.15 tolerated(0.33) benign(0.146) TCGA-BA-A4II-01 2 8822561 8822561 A G ID2 Missense_Mutation p.H89R 0.08 tolerated(0.33) benign(0.057) TCGA-BA-A4II-01 2 95774025 95774025 C T MRPS5 Missense_Mutation p.E178K 0.18 tolerated(0.19) benign(0.354) TCGA-BA-A4II-01 2 98851130 98851130 G T VWA3B Silent p.L776L 0.14 TCGA-BA-A4II-01 3 121396297 121396297 C T GOLGB1 Silent p.R2958R 0.16 TCGA-BA-A4II-01 3 122944059 122944059 A C SEC22A Missense_Mutation p.Q152H 0.11 tolerated(0.55) benign(0.005) TCGA-BA-A4II-01 3 128532230 128532230 C A RAB7A Silent p.R197R 0.13 TCGA-BA-A4II-01 3 170858223 170858223 G A TNIK Missense_Mutation p.R433W 0.06 deleterious(0) unknown(0) TCGA-BA-A4II-01 3 2944593 2944593 A G CNTN4 Missense_Mutation p.I371V 0.34 tolerated(0.07) possibly_damaging(0.82) TCGA-BA-A4II-01 3 48625824 48625824 C T COL7A1 Silent p.P867P 0.18 TCGA-BA-A4II-01 3 51101894 51101894 C T DOCK3 Missense_Mutation p.L111F 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-BA-A4II-01 3 53133435 53133435 A G RFT1 Silent p.C390C 0.13 TCGA-BA-A4II-01 4 48578177 48578177 C G FRYL Missense_Mutation p.W864S 0.16 deleterious(0) probably_damaging(0.999) TCGA-BA-A4II-01 4 5170100 5170100 G A STK32B Silent p.E61E 0.15 TCGA-BA-A4II-01 4 57676282 57676282 C T SPINK2 3'UTR 0.36 TCGA-BA-A4II-01 4 6082016 6082016 C T JAKMIP1 Silent p.A375A 0.12 TCGA-BA-A4II-01 5 107216852 107216852 C A FBXL17 Missense_Mutation p.M617I 0.12 tolerated(0.46) benign(0.004) TCGA-BA-A4II-01 5 140590357 140590357 C T PCDHB12 Silent p.T626T 0.12 TCGA-BA-A4II-01 5 140720964 140720964 T C PCDHGA2 Splice_Site p.X808_splice 0.08 TCGA-BA-A4II-01 5 140745430 140745430 C T PCDHGA5 Silent p.T511T 0.10 TCGA-BA-A4II-01 5 150723748 150723748 G A SLC36A2 Missense_Mutation p.A82V 0.18 deleterious(0) probably_damaging(0.982) TCGA-BA-A4II-01 5 24535227 24535227 G C CDH10 Missense_Mutation p.P270A 0.09 tolerated(0.15) benign(0.017) TCGA-BA-A4II-01 5 3599913 3599913 T A IRX1 Missense_Mutation p.L284Q 0.18 tolerated(0.09) possibly_damaging(0.795) TCGA-BA-A4II-01 5 41176735 41176735 A T C6 Missense_Mutation p.V337D 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-BA-A4II-01 5 45462012 45462012 T G HCN1 Missense_Mutation p.Q316P 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-BA-A4II-01 5 76708950 76708950 T A PDE8B Missense_Mutation p.L576Q 0.08 deleterious(0) probably_damaging(0.975) TCGA-BA-A4II-01 5 89815001 89815001 C A LYSMD3 Missense_Mutation p.V186L 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-BA-A4II-01 6 123542661 123542661 G T TRDN Missense_Mutation p.T674N 0.17 deleterious_low_confidence(0) benign(0.374) TCGA-BA-A4II-01 6 132059223 132059223 A T ENPP3 Missense_Mutation p.R740S 0.18 deleterious(0.05) possibly_damaging(0.904) TCGA-BA-A4II-01 6 168226593 168226593 T C MLLT4 5'Flank 0.09 TCGA-BA-A4II-01 6 25600788 25600788 G C LRRC16A Silent p.R1122R 0.16 TCGA-BA-A4II-01 6 26452430 26452430 A G BTN3A3 Missense_Mutation p.K516E 0.12 tolerated(0.88) benign(0.014) TCGA-BA-A4II-01 6 33173308 33173308 G C HSD17B8 Missense_Mutation p.V158L 0.07 deleterious(0.01) benign(0.289) TCGA-BA-A4II-01 6 42630014 42630014 A G UBR2 Missense_Mutation p.R1179G 0.26 tolerated(0.07) benign(0.027) TCGA-BA-A4II-01 6 43323121 43323121 G A ZNF318 Missense_Mutation p.R651C 0.11 possibly_damaging(0.835) TCGA-BA-A4II-01 6 43323141 43323141 T C ZNF318 Missense_Mutation p.H644R 0.13 benign(0) TCGA-BA-A4II-01 6 47200709 47200709 C G TNFRSF21 Missense_Mutation p.R587P 0.30 deleterious(0) probably_damaging(0.995) TCGA-BA-A4II-01 6 47762987 47762987 C T OPN5 Silent p.H148H 0.15 TCGA-BA-A4II-01 6 53747727 53747727 T C LRRC1 Silent p.L133L 0.28 TCGA-BA-A4II-01 6 7862723 7862723 G T BMP6 Missense_Mutation p.S399I 0.09 tolerated(0.38) possibly_damaging(0.475) TCGA-BA-A4II-01 7 133986850 133986850 G C SLC35B4 Missense_Mutation p.F119L 0.19 tolerated(0.49) benign(0) TCGA-BA-A4II-01 8 105441917 105441917 T C DPYS Missense_Mutation p.Y269C 0.15 deleterious(0) probably_damaging(0.993) TCGA-BA-A4II-01 8 21973240 21973240 G A HR Silent p.A1181A 0.28 TCGA-BA-A4II-01 8 37687410 37687410 G C GPR124 Missense_Mutation p.R199P 0.21 deleterious(0.04) possibly_damaging(0.448) TCGA-BA-A4II-01 8 37696570 37696570 G A GPR124 Missense_Mutation p.A786T 0.22 tolerated(1) benign(0.007) TCGA-BA-A4II-01 8 72967823 72967823 G T TRPA1 Silent p.I459I 0.19 TCGA-BA-A4II-01 8 8869081 8869081 T A ERI1 Missense_Mutation p.L106Q 0.18 deleterious(0) probably_damaging(1) TCGA-BA-A4II-01 9 139089573 139089573 C T LHX3 Silent p.A269A 0.19 TCGA-BA-A4II-01 9 35546716 35546716 A G RUSC2 Silent p.L66L 0.16 TCGA-BA-A4II-01 9 84564739 84564739 A C RP11-383M4.6 Intron 0.35 TCGA-BA-A4II-01 9 91616168 91616168 T C S1PR3 Missense_Mutation p.L18P 0.07 deleterious(0) possibly_damaging(0.794) TCGA-BA-A4II-01 X 123517884 123517884 T C TENM1 Silent p.T2299T 0.35 TCGA-BA-A4II-01 X 40541116 40541116 G A MED14 Silent p.T815T 0.22 TCGA-BA-A4II-01 X 63488489 63488489 G T MTMR8 Missense_Mutation p.D681E 0.15 tolerated_low_confidence(0.81) benign(0.003) TCGA-BA-A4II-01 X 70511784 70511787 TTCA - NONO Frame_Shift_Del p.H106Rfs*15 0.31 TCGA-BA-A6D8-01 10 103530240 103530240 G A FGF8 Missense_Mutation p.T194M 0.14 deleterious(0.01) possibly_damaging(0.871) TCGA-BA-A6D8-01 10 124390760 124390760 C A DMBT1 Missense_Mutation p.N1974K 0.38 deleterious(0) probably_damaging(0.981) TCGA-BA-A6D8-01 10 5566961 5566961 C T CALML3 5'UTR 0.50 TCGA-BA-A6D8-01 10 5808504 5808504 C G GDI2 Missense_Mutation p.E363D 0.42 deleterious(0.04) benign(0.006) TCGA-BA-A6D8-01 10 60549041 60549041 T A BICC1 Missense_Mutation p.L207Q 0.54 deleterious(0) benign(0.345) TCGA-BA-A6D8-01 10 7608335 7608335 C T ITIH5 Missense_Mutation p.A729T 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-BA-A6D8-01 11 101353835 101353835 A G TRPC6 Missense_Mutation p.I452T 0.35 tolerated(0.1) probably_damaging(0.989) TCGA-BA-A6D8-01 11 101815012 101815012 C T KIAA1377 Nonsense_Mutation p.R89* 0.47 TCGA-BA-A6D8-01 11 108350156 108350156 C T KDELC2 Missense_Mutation p.D389N 0.30 tolerated(0.28) benign(0.08) TCGA-BA-A6D8-01 11 114401459 114401459 G A NXPE1 5'UTR 0.29 TCGA-BA-A6D8-01 11 118277667 118277667 C G ATP5L Missense_Mutation p.S23W 0.44 deleterious(0.01) probably_damaging(0.957) TCGA-BA-A6D8-01 11 12316275 12316275 C T MICALCL Missense_Mutation p.P433S 0.47 tolerated(0.16) benign(0.04) TCGA-BA-A6D8-01 11 24750790 24750790 A C LUZP2 Silent p.T46T 0.23 TCGA-BA-A6D8-01 11 59271482 59271482 T C OR4D11 Missense_Mutation p.I145T 0.37 deleterious(0.05) benign(0.042) TCGA-BA-A6D8-01 11 85346835 85346835 T A TMEM126B Intron 0.25 TCGA-BA-A6D8-01 11 8942974 8942974 C G C11orf16 Silent p.L431L 0.43 TCGA-BA-A6D8-01 12 101477583 101477583 G A ANO4 Missense_Mutation p.G473E 0.46 tolerated(0.06) probably_damaging(1) TCGA-BA-A6D8-01 12 102053472 102053472 G A MYBPC1 Missense_Mutation p.R572Q 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-BA-A6D8-01 12 30783830 30783830 G T IPO8 Silent p.S1026S 0.37 TCGA-BA-A6D8-01 12 39047819 39047819 C T CPNE8 Missense_Mutation p.M520I 0.06 tolerated(0.22) probably_damaging(0.958) TCGA-BA-A6D8-01 12 45429828 45429828 C A DBX2 Missense_Mutation p.R158L 0.25 tolerated(0.13) benign(0.026) TCGA-BA-A6D8-01 12 50045040 50045040 G A FMNL3 Missense_Mutation p.R570W 0.35 deleterious(0) probably_damaging(0.997) TCGA-BA-A6D8-01 12 56079042 56079042 C T ITGA7 Missense_Mutation p.E1076K 0.15 tolerated(0.16) benign(0.019) TCGA-BA-A6D8-01 12 57553653 57553653 A G LRP1 Missense_Mutation p.N615S 0.34 probably_damaging(0.946) TCGA-BA-A6D8-01 12 67691443 67691443 G A CAND1 Missense_Mutation p.G250S 0.40 deleterious(0.02) possibly_damaging(0.87) TCGA-BA-A6D8-01 13 101833498 101833498 A C NALCN Intron 0.53 TCGA-BA-A6D8-01 13 33679799 33679799 T A STARD13 Silent p.A1091A 0.65 TCGA-BA-A6D8-01 14 35592829 35592829 A G KIAA0391 Silent p.K126K 0.51 TCGA-BA-A6D8-01 14 63851189 63851189 T C PPP2R5E Missense_Mutation p.Y392C 0.43 deleterious(0) probably_damaging(0.997) TCGA-BA-A6D8-01 14 77297647 77297647 G A C14orf166B Missense_Mutation p.E107K 0.40 tolerated(0.34) benign(0.04) TCGA-BA-A6D8-01 14 92189429 92189429 A T CATSPERB Missense_Mutation p.S91R 0.13 tolerated(0.06) probably_damaging(0.996) TCGA-BA-A6D8-01 15 22706090 22706090 C A AC116165.1 5'Flank 0.23 TCGA-BA-A6D8-01 15 69329471 69329471 T C NOX5 Missense_Mutation p.F431S 0.70 tolerated(0.09) benign(0.019) TCGA-BA-A6D8-01 16 169169 169169 G A NPRL3 Nonsense_Mutation p.R92* 0.40 TCGA-BA-A6D8-01 16 18827673 18827673 T C SMG1 Missense_Mutation p.H3418R 0.52 deleterious(0) probably_damaging(0.977) TCGA-BA-A6D8-01 16 20386258 20386258 C T PDILT Silent p.E189E 0.09 TCGA-BA-A6D8-01 16 23702254 23702254 C T ERN2 Silent p.T941T 0.27 TCGA-BA-A6D8-01 16 30492809 30492809 C G ITGAL Nonsense_Mutation p.S209* 0.27 TCGA-BA-A6D8-01 16 32077658 32077658 G A IGHV3OR16-9 Silent p.T91T 0.19 TCGA-BA-A6D8-01 16 3843540 3843541 - T CREBBP Frame_Shift_Ins p.Q355Tfs*12 0.31 TCGA-BA-A6D8-01 16 51175040 51175040 C T SALL1 Missense_Mutation p.V365I 0.26 tolerated(0.47) benign(0.018) TCGA-BA-A6D8-01 16 72170468 72170468 C T PMFBP1 Missense_Mutation p.R361Q 0.23 tolerated(0.22) benign(0.062) TCGA-BA-A6D8-01 17 18022345 18022345 C T MYO15A Silent p.R77R 0.57 TCGA-BA-A6D8-01 17 29622180 29622180 G T OMG Missense_Mutation p.F390L 0.14 tolerated(0.07) probably_damaging(0.931) TCGA-BA-A6D8-01 17 36499189 36499189 G T GPR179 Missense_Mutation p.L162M 0.27 tolerated(0.08) probably_damaging(0.964) TCGA-BA-A6D8-01 17 5322813 5322813 G A NUP88 Missense_Mutation p.P53L 0.50 tolerated_low_confidence(0.36) benign(0.006) TCGA-BA-A6D8-01 17 53797988 53797988 G A TMEM100 3'UTR 0.63 TCGA-BA-A6D8-01 17 5392615 5392616 - A MIS12 Frame_Shift_Ins p.I147Nfs*14 0.22 TCGA-BA-A6D8-01 17 56833335 56833335 G C PPM1E 5'UTR 0.38 TCGA-BA-A6D8-01 17 7573926 7573926 C T TP53 Splice_Site p.X367_splice 0.46 TCGA-BA-A6D8-01 17 7579312 7579312 C G TP53 Silent p.T125T 0.40 TCGA-BA-A6D8-01 19 10200662 10200662 G T C19orf66 Missense_Mutation p.R108L 0.38 tolerated(0.07) benign(0.278) TCGA-BA-A6D8-01 19 19655470 19655470 C T CILP2 Missense_Mutation p.R706W 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6D8-01 19 3005477 3005477 C A TLE2 Silent p.L618L 0.27 TCGA-BA-A6D8-01 19 31025786 31025786 G A ZNF536 Missense_Mutation p.V735I 0.31 tolerated(0.34) benign(0.005) TCGA-BA-A6D8-01 19 33617574 33617574 C T GPATCH1 Silent p.S900S 0.23 TCGA-BA-A6D8-01 19 38990452 38990452 G A RYR1 Missense_Mutation p.R2402Q 0.40 benign(0.031) TCGA-BA-A6D8-01 19 39071027 39071027 C T RYR1 Silent p.G4843G 0.39 TCGA-BA-A6D8-01 19 41173407 41173407 C T NUMBL Missense_Mutation p.G599D 0.20 tolerated_low_confidence(0.06) probably_damaging(0.992) TCGA-BA-A6D8-01 19 4491567 4491567 C T HDGFRP2 Missense_Mutation p.S165L 0.36 deleterious(0.02) benign(0.143) TCGA-BA-A6D8-01 19 50322477 50322477 G A MED25 Missense_Mutation p.A77T 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-BA-A6D8-01 19 53014034 53014034 G C ZNF578 Missense_Mutation p.E134Q 0.30 tolerated(0.12) benign(0.002) TCGA-BA-A6D8-01 19 58438683 58438683 C T ZNF418 Missense_Mutation p.G289E 0.29 tolerated(0.25) probably_damaging(0.999) TCGA-BA-A6D8-01 1 12888484 12888484 G C PRAMEF11 Missense_Mutation p.L14V 0.32 tolerated(0.13) benign(0.013) TCGA-BA-A6D8-01 1 153615848 153615848 A G CHTOP Intron 0.41 TCGA-BA-A6D8-01 1 159505300 159505300 C A OR10J5 Missense_Mutation p.L166F 0.14 deleterious(0.01) probably_damaging(0.97) TCGA-BA-A6D8-01 1 160461016 160461016 G A SLAMF6 Missense_Mutation p.S182F 0.16 tolerated(0.1) probably_damaging(0.933) TCGA-BA-A6D8-01 1 215955496 215955496 C A USH2A Missense_Mutation p.R3543L 0.24 benign(0.031) TCGA-BA-A6D8-01 1 216420274 216420274 A G USH2A Missense_Mutation p.V821A 0.26 possibly_damaging(0.648) TCGA-BA-A6D8-01 1 22447766 22447767 - TC WNT4 Frame_Shift_Ins p.S176Efs*12 0.13 TCGA-BA-A6D8-01 1 229771720 229771720 C T URB2 Missense_Mutation p.R454C 0.31 tolerated(0.33) benign(0.118) TCGA-BA-A6D8-01 1 46877317 46877317 G T FAAH Missense_Mutation p.E450D 0.12 tolerated(0.33) benign(0.039) TCGA-BA-A6D8-01 1 68513009 68513009 A G DIRAS3 5'UTR 0.31 TCGA-BA-A6D8-01 1 78180383 78180383 T C USP33 Missense_Mutation p.I742V 0.08 tolerated(0.47) benign(0.004) TCGA-BA-A6D8-01 1 7995095 7995095 C T TNFRSF9 Silent p.P174P 0.12 TCGA-BA-A6D8-01 20 30408135 30408135 G A MYLK2 Missense_Mutation p.A87T 0.42 deleterious_low_confidence(0.05) possibly_damaging(0.558) TCGA-BA-A6D8-01 20 31021616 31021616 A - ASXL1 Frame_Shift_Del p.K539Sfs*164 0.26 TCGA-BA-A6D8-01 20 33315172 33315172 T A NCOA6 Silent p.P2013P 0.27 TCGA-BA-A6D8-01 20 3584812 3584812 A G ATRN Missense_Mutation p.K1235R 0.42 tolerated(0.59) benign(0.034) TCGA-BA-A6D8-01 20 36639950 36639950 C A TTI1 Missense_Mutation p.V757F 0.38 tolerated(0.12) benign(0.029) TCGA-BA-A6D8-01 20 43703874 43703874 G A STK4 3'UTR 0.36 TCGA-BA-A6D8-01 20 43703875 43703875 G T STK4 3'UTR 0.36 TCGA-BA-A6D8-01 20 52644945 52644945 C G BCAS1 Missense_Mutation p.V237L 0.29 deleterious(0.04) benign(0.439) TCGA-BA-A6D8-01 21 33651317 33651317 G T MIS18A Silent p.G3G 0.54 TCGA-BA-A6D8-01 2 125671862 125671862 C G CNTNAP5 Missense_Mutation p.I1306M 0.42 deleterious(0.05) benign(0.285) TCGA-BA-A6D8-01 2 160303315 160303315 C G BAZ2B Missense_Mutation p.R225T 0.11 benign(0.227) TCGA-BA-A6D8-01 2 164467569 164467569 A G FIGN Missense_Mutation p.V258A 0.31 tolerated(0.27) possibly_damaging(0.539) TCGA-BA-A6D8-01 2 179587962 179587962 G T TTN Missense_Mutation p.P7258T 0.34 TCGA-BA-A6D8-01 2 179590629 179590629 T C TTN Missense_Mutation p.Y6807C 0.40 TCGA-BA-A6D8-01 2 179615135 179615135 A G TTN Intron 0.38 TCGA-BA-A6D8-01 2 196825057 196825057 A G DNAH7 Silent p.L940L 0.34 TCGA-BA-A6D8-01 2 29296729 29296729 C A C2orf71 Missense_Mutation p.E133D 0.41 tolerated(0.25) benign(0.05) TCGA-BA-A6D8-01 2 44028815 44028815 A G DYNC2LI1 Missense_Mutation p.I257V 0.17 tolerated(0.42) benign(0.02) TCGA-BA-A6D8-01 2 72968448 72968448 T C EXOC6B Silent p.E88E 0.42 TCGA-BA-A6D8-01 2 87243489 87243489 C T PLGLB1 Missense_Mutation p.M76I 0.30 tolerated(0.16) possibly_damaging(0.507) TCGA-BA-A6D8-01 2 88427562 88427562 G A FABP1 5'UTR 0.31 TCGA-BA-A6D8-01 3 11643423 11643423 G T VGLL4 Silent p.T52T 0.14 TCGA-BA-A6D8-01 3 119133958 119133958 G C ARHGAP31 Missense_Mutation p.G1061A 0.46 tolerated_low_confidence(0.27) benign(0.001) TCGA-BA-A6D8-01 3 148614363 148614363 T A CPA3 Missense_Mutation p.F375I 0.26 deleterious(0) probably_damaging(1) TCGA-BA-A6D8-01 3 189582020 189582020 G A TP63 Splice_Site p.X194_splice 0.53 TCGA-BA-A6D8-01 3 195395471 195395471 T A SDHAP2 RNA 0.15 TCGA-BA-A6D8-01 3 49394763 49394763 A T GPX1 3'UTR 0.63 TCGA-BA-A6D8-01 3 9412933 9412933 G T THUMPD3 Nonsense_Mutation p.E174* 0.44 TCGA-BA-A6D8-01 3 98512578 98512578 C A ST3GAL6 Missense_Mutation p.N323K 0.42 tolerated(0.88) benign(0.006) TCGA-BA-A6D8-01 4 123150333 123150333 C T KIAA1109 Missense_Mutation p.R994C 0.51 possibly_damaging(0.891) TCGA-BA-A6D8-01 4 16258063 16258063 G A TAPT1-AS1 RNA 0.21 TCGA-BA-A6D8-01 4 16258116 16258116 G A TAPT1-AS1 RNA 0.23 TCGA-BA-A6D8-01 4 16258140 16258140 A C TAPT1-AS1 RNA 0.35 TCGA-BA-A6D8-01 4 16258143 16258143 T G TAPT1-AS1 RNA 0.35 TCGA-BA-A6D8-01 4 46042916 46042916 T A GABRG1 3'UTR 0.62 TCGA-BA-A6D8-01 4 48381711 48381711 C G SLAIN2 Missense_Mutation p.N236K 0.41 deleterious(0.03) benign(0.229) TCGA-BA-A6D8-01 4 76879032 76879032 G A SDAD1 Nonsense_Mutation p.Q516* 0.23 TCGA-BA-A6D8-01 5 156390253 156390253 G C TIMD4 5'UTR 0.64 TCGA-BA-A6D8-01 5 175110135 175110135 G C HRH2 5'UTR 0.41 TCGA-BA-A6D8-01 5 179564678 179564678 C T RASGEF1C Missense_Mutation p.R71H 0.43 deleterious(0.02) probably_damaging(0.944) TCGA-BA-A6D8-01 5 32093099 32093099 C T PDZD2 Missense_Mutation p.T2605I 0.25 deleterious(0.02) possibly_damaging(0.575) TCGA-BA-A6D8-01 5 87502911 87502911 A - TMEM161B Frame_Shift_Del p.F178Sfs*9 0.65 TCGA-BA-A6D8-01 5 88018473 88018473 C G MEF2C Missense_Mutation p.R467T 0.53 tolerated(0.34) possibly_damaging(0.772) TCGA-BA-A6D8-01 6 134312379 134312379 G C SLC2A12 Missense_Mutation p.Q590E 0.36 tolerated(0.43) benign(0.154) TCGA-BA-A6D8-01 6 151857535 151857535 G A CCDC170 Missense_Mutation p.S47N 0.21 deleterious(0) probably_damaging(0.979) TCGA-BA-A6D8-01 6 152783817 152783817 T A SYNE1 Intron 0.47 TCGA-BA-A6D8-01 6 31323359 31323360 - T HLA-B Frame_Shift_Ins p.T211Dfs*10 0.24 TCGA-BA-A6D8-01 6 51913367 51913367 G A PKHD1 Missense_Mutation p.T777M 0.29 deleterious(0.02) benign(0.189) TCGA-BA-A6D8-01 6 6347394 6347394 A G SNAPC5P1 RNA 0.38 TCGA-BA-A6D8-01 6 70866118 70866118 C T COL19A1 Missense_Mutation p.R727W 0.24 deleterious(0.01) probably_damaging(0.96) TCGA-BA-A6D8-01 6 73023285 73023285 T A RIMS1 Missense_Mutation p.V1347D 0.31 deleterious(0) possibly_damaging(0.824) TCGA-BA-A6D8-01 7 100370987 100370987 G A ZAN Silent p.P1835P 0.25 TCGA-BA-A6D8-01 7 131012647 131012647 G A MKLN1 5'UTR 0.40 TCGA-BA-A6D8-01 7 140125940 140125940 G T RAB19 Missense_Mutation p.C215F 0.29 deleterious(0) probably_damaging(0.999) TCGA-BA-A6D8-01 7 147914379 147914379 G C CNTNAP2 Splice_Site p.X1004_splice 0.40 TCGA-BA-A6D8-01 7 150094135 150094135 C G ZNF775 Missense_Mutation p.A189G 0.21 tolerated(0.06) benign(0.359) TCGA-BA-A6D8-01 7 154738073 154738073 A G PAXIP1 Splice_Site p.X1065_splice 0.34 TCGA-BA-A6D8-01 7 75931976 75931985 GAGCCCAGCG - HSPB1 5'UTR 0.10 TCGA-BA-A6D8-01 7 75959452 75959452 G T YWHAG Silent p.V62V 0.16 TCGA-BA-A6D8-01 7 81388012 81388012 G T HGF Missense_Mutation p.N121K 0.43 tolerated(1) benign(0.186) TCGA-BA-A6D8-01 7 8178675 8178675 C T ICA1 Missense_Mutation p.E320K 0.18 tolerated(0.44) benign(0.063) TCGA-BA-A6D8-01 8 126059561 126059561 G A KIAA0196 Nonsense_Mutation p.Q798* 0.16 TCGA-BA-A6D8-01 8 145742569 145742569 T A RECQL4 Silent p.P73P 0.40 TCGA-BA-A6D8-01 8 62212768 62212768 G A CLVS1 Missense_Mutation p.G128R 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-BA-A6D8-01 8 87076416 87076416 G A PSKH2 Silent p.S210S 0.34 TCGA-BA-A6D8-01 8 92999149 92999149 C T RUNX1T1 Missense_Mutation p.R359K 0.07 deleterious(0.01) possibly_damaging(0.9) TCGA-BA-A6D8-01 9 130427537 130427537 A T STXBP1 Missense_Mutation p.D197V 0.31 deleterious(0.04) possibly_damaging(0.449) TCGA-BA-A6D8-01 9 137650128 137650128 G T COL5A1 Nonsense_Mutation p.E641* 0.63 TCGA-BA-A6D8-01 9 139417630 139417630 G T NOTCH1 Nonsense_Mutation p.C138* 0.82 TCGA-BA-A6D8-01 9 33280911 33280911 A G CHMP5 3'UTR 0.55 TCGA-BA-A6D8-01 9 34485161 34485161 G A DNAI1 Missense_Mutation p.V35M 0.40 tolerated(0.27) benign(0.018) TCGA-BA-A6D8-01 9 73230854 73230854 C A TRPM3 Missense_Mutation p.K820N 0.74 tolerated(0.08) probably_damaging(0.917) TCGA-BA-A6D8-01 9 77280437 77280437 G C RORB Missense_Mutation p.R309P 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-BA-A6D8-01 X 122747346 122747346 G C THOC2 Missense_Mutation p.D1527E 0.88 tolerated_low_confidence(0.72) benign(0) TCGA-BA-A6D8-01 X 123480505 123480505 G A SH2D1A Missense_Mutation p.A5T 0.72 tolerated(0.37) benign(0) TCGA-BA-A6D8-01 X 140994009 140994009 C T MAGEC1 Silent p.S273S 0.66 TCGA-BA-A6D8-01 X 152710807 152710807 C T TREX2 Missense_Mutation p.A28T 0.78 tolerated(1) benign(0.038) TCGA-BA-A6D8-01 X 153595857 153595857 G A FLNA Missense_Mutation p.T259I 0.73 deleterious(0) possibly_damaging(0.86) TCGA-BA-A6D8-01 X 26157865 26157865 G T MAGEB18 Nonsense_Mutation p.E255* 0.62 TCGA-BA-A6DA-01 10 102286236 102286236 A C NDUFB8 Missense_Mutation p.C130G 0.27 tolerated(0.21) possibly_damaging(0.868) TCGA-BA-A6DA-01 10 102743435 102743435 C T SEMA4G Silent p.C693C 0.26 TCGA-BA-A6DA-01 10 103588855 103588855 C A KCNIP2 Missense_Mutation p.V124F 0.16 tolerated(0.1) benign(0.101) TCGA-BA-A6DA-01 10 105361946 105361946 C T SH3PXD2A Missense_Mutation p.R982Q 0.17 tolerated(0.1) probably_damaging(0.997) TCGA-BA-A6DA-01 10 108521362 108521362 G T SORCS1 Missense_Mutation p.P315T 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-BA-A6DA-01 10 11060021 11060021 C A CELF2 5'UTR 0.17 TCGA-BA-A6DA-01 10 112724338 112724338 G T SHOC2 Silent p.R74R 0.18 TCGA-BA-A6DA-01 10 115662245 115662245 G - NHLRC2 Frame_Shift_Del p.G463Vfs*6 0.23 TCGA-BA-A6DA-01 10 115985873 115985873 G C TDRD1 Missense_Mutation p.A1025P 0.15 deleterious(0) probably_damaging(0.991) TCGA-BA-A6DA-01 10 119043865 119043865 G T PDZD8 Missense_Mutation p.F793L 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-BA-A6DA-01 10 124708225 124708225 C A C10orf88 Missense_Mutation p.M196I 0.26 deleterious(0.04) benign(0.173) TCGA-BA-A6DA-01 10 129347804 129347805 - T NPS Frame_Shift_Ins p.W22Lfs*9 0.14 TCGA-BA-A6DA-01 10 132965059 132965059 C A TCERG1L Splice_Site p.X315_splice 0.26 TCGA-BA-A6DA-01 10 133976814 133976814 G C JAKMIP3 Missense_Mutation p.K772N 0.25 deleterious(0.02) benign(0.062) TCGA-BA-A6DA-01 10 135038256 135038256 G T KNDC1 Missense_Mutation p.Q1704H 0.31 deleterious(0) benign(0.358) TCGA-BA-A6DA-01 10 135094821 135094821 A G TUBGCP2 Silent p.Y871Y 0.13 TCGA-BA-A6DA-01 10 15256456 15256456 C G FAM171A1 Silent p.L377L 0.34 TCGA-BA-A6DA-01 10 15617509 15617509 T C ITGA8 Silent p.P819P 0.21 TCGA-BA-A6DA-01 10 15885231 15885231 G T FAM188A Missense_Mutation p.S72Y 0.07 tolerated(1) possibly_damaging(0.83) TCGA-BA-A6DA-01 10 17142004 17142004 C A CUBN Nonsense_Mutation p.E589* 0.24 TCGA-BA-A6DA-01 10 21784749 21784749 C A CASC10 Missense_Mutation p.R64L 0.32 tolerated_low_confidence(0.21) benign(0.014) TCGA-BA-A6DA-01 10 22680657 22680657 G A SPAG6 Splice_Site p.X336_splice 0.14 TCGA-BA-A6DA-01 10 25701183 25701183 G A GPR158 Silent p.R372R 0.16 TCGA-BA-A6DA-01 10 32780866 32780866 G T CCDC7 Missense_Mutation p.M271I 0.10 tolerated(0.29) benign(0.005) TCGA-BA-A6DA-01 10 375537 375537 A T DIP2C Missense_Mutation p.Y1197N 0.20 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 10 49812876 49812876 G C ARHGAP22 5'UTR 0.21 TCGA-BA-A6DA-01 10 52389345 52389345 C A RP11-50E11.3 RNA 0.25 TCGA-BA-A6DA-01 10 52603857 52603857 C A A1CF Missense_Mutation p.G50V 0.18 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 10 5765644 5765644 C A FAM208B Missense_Mutation p.Q51K 0.22 tolerated(1) benign(0.079) TCGA-BA-A6DA-01 10 61832871 61832871 C A ANK3 Nonsense_Mutation p.E2590* 0.17 TCGA-BA-A6DA-01 10 70181996 70181996 G A DNA2 Missense_Mutation p.L981F 0.33 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DA-01 10 72462206 72462206 G T ADAMTS14 Missense_Mutation p.G221W 0.08 deleterious(0.01) possibly_damaging(0.8) TCGA-BA-A6DA-01 10 72492069 72492069 G A ADAMTS14 Missense_Mutation p.D391N 0.31 deleterious(0) probably_damaging(0.967) TCGA-BA-A6DA-01 10 83635400 83635400 C A NRG3 Missense_Mutation p.L102I 0.23 tolerated(0.1) probably_damaging(0.986) TCGA-BA-A6DA-01 10 87407242 87407242 C T GRID1 Intron 0.34 TCGA-BA-A6DA-01 10 88446937 88446937 G C LDB3 Silent p.A267A 0.20 TCGA-BA-A6DA-01 10 89312134 89312134 T A MINPP1 Missense_Mutation p.Y455N 0.23 deleterious(0) probably_damaging(0.996) TCGA-BA-A6DA-01 10 92508721 92508721 G C HTR7 Missense_Mutation p.D390E 0.22 tolerated(0.14) probably_damaging(0.999) TCGA-BA-A6DA-01 10 93221022 93221022 A T HECTD2 Missense_Mutation p.E140V 0.20 tolerated(0.12) benign(0.091) TCGA-BA-A6DA-01 10 96612543 96612543 C T CYP2C19 Silent p.L449L 0.22 TCGA-BA-A6DA-01 10 96702109 96702109 C A CYP2C9 Intron 0.22 TCGA-BA-A6DA-01 10 98165008 98165008 C A TLL2 Missense_Mutation p.W416C 0.18 deleterious(0.01) benign(0.199) TCGA-BA-A6DA-01 10 98170212 98170212 C T TLL2 Silent p.Q356Q 0.16 TCGA-BA-A6DA-01 11 101785950 101785950 G C KIAA1377 5'UTR 0.24 TCGA-BA-A6DA-01 11 10820763 10820763 T C EIF4G2 Missense_Mutation p.K845E 0.30 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 11 122848490 122848490 C T BSX Missense_Mutation p.R190H 0.26 tolerated(0.14) benign(0) TCGA-BA-A6DA-01 11 123847811 123847811 G T OR10S1 Silent p.P196P 0.28 TCGA-BA-A6DA-01 11 133789689 133789689 C T IGSF9B Missense_Mutation p.G1311R 0.20 deleterious_low_confidence(0.05) benign(0.083) TCGA-BA-A6DA-01 11 13733495 13733495 A T FAR1 Silent p.R263R 0.21 TCGA-BA-A6DA-01 11 15096346 15096346 T C CALCB Missense_Mutation p.F28L 0.25 tolerated(0.4) benign(0.023) TCGA-BA-A6DA-01 11 16077304 16077304 T C SOX6 Silent p.Q415Q 0.21 TCGA-BA-A6DA-01 11 18103051 18103051 C G SAAL1 Splice_Site p.X414_splice 0.24 TCGA-BA-A6DA-01 11 1959666 1959666 A G TNNT3 Splice_Site p.X241_splice 0.23 TCGA-BA-A6DA-01 11 20070386 20070386 G T NAV2 Missense_Mutation p.D1362Y 0.24 deleterious(0) possibly_damaging(0.649) TCGA-BA-A6DA-01 11 20180737 20180737 C A DBX1 Missense_Mutation p.A157S 0.15 tolerated(0.13) possibly_damaging(0.688) TCGA-BA-A6DA-01 11 20180738 20180738 T G DBX1 Silent p.P156P 0.14 TCGA-BA-A6DA-01 11 2432736 2432738 GAA - TRPM5 In_Frame_Del p.F876del 0.30 TCGA-BA-A6DA-01 11 46726653 46726653 G T ZNF408 Missense_Mutation p.C468F 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-BA-A6DA-01 11 47283484 47283484 G A NR1H3 Silent p.E301E 0.21 TCGA-BA-A6DA-01 11 4842795 4842795 G C OR51F2 Silent p.L60L 0.28 TCGA-BA-A6DA-01 11 5372757 5372757 C T OR51B6 Missense_Mutation p.A7V 0.27 tolerated(0.1) benign(0.003) TCGA-BA-A6DA-01 11 55036774 55036774 G T TRIM48 Missense_Mutation p.G212V 0.16 tolerated(0.42) benign(0.226) TCGA-BA-A6DA-01 11 55036775 55036775 G T TRIM48 Silent p.G212G 0.16 TCGA-BA-A6DA-01 11 55541504 55541504 C A OR5D13 Missense_Mutation p.S197R 0.21 deleterious(0.01) benign(0.213) TCGA-BA-A6DA-01 11 55944181 55944181 G T OR5J2 Missense_Mutation p.V30L 0.23 tolerated(1) benign(0.002) TCGA-BA-A6DA-01 11 56143391 56143391 G T OR8U1 Missense_Mutation p.A98S 0.27 deleterious(0.01) possibly_damaging(0.682) TCGA-BA-A6DA-01 11 56230731 56230731 G A OR5M9 Silent p.I49I 0.25 TCGA-BA-A6DA-01 11 56257933 56257933 G C OR5M8 Nonsense_Mutation p.S305* 0.22 TCGA-BA-A6DA-01 11 56409533 56409533 C G OR5AP2 Missense_Mutation p.R128P 0.21 deleterious(0) probably_damaging(0.979) TCGA-BA-A6DA-01 11 56467883 56467883 C A OR9G1 Missense_Mutation p.T7K 0.10 deleterious(0.04) possibly_damaging(0.707) TCGA-BA-A6DA-01 11 57886290 57886290 G T OR9I1 Silent p.A209A 0.24 TCGA-BA-A6DA-01 11 57947814 57947814 C A OR9Q1 Missense_Mutation p.L300M 0.20 tolerated(0.1) benign(0.04) TCGA-BA-A6DA-01 11 58034996 58034996 T A OR10W1 Missense_Mutation p.D112V 0.29 deleterious(0) probably_damaging(0.965) TCGA-BA-A6DA-01 11 58956686 58956686 G T DTX4 Missense_Mutation p.R350M 0.10 deleterious(0.01) probably_damaging(0.928) TCGA-BA-A6DA-01 11 60183199 60183199 C G MS4A14 Missense_Mutation p.P286R 0.19 deleterious(0.04) probably_damaging(0.926) TCGA-BA-A6DA-01 11 6190924 6190924 C A OR52B2 Missense_Mutation p.L211F 0.23 deleterious(0.05) benign(0.023) TCGA-BA-A6DA-01 11 64368360 64368360 C A SLC22A12 Silent p.P516P 0.19 TCGA-BA-A6DA-01 11 6519792 6519792 C A DNHD1 Missense_Mutation p.P116H 0.20 probably_damaging(0.998) TCGA-BA-A6DA-01 11 6643193 6643193 G A DCHS1 Silent p.P3238P 0.17 TCGA-BA-A6DA-01 11 66631301 66631301 T C PC Missense_Mutation p.T438A 0.20 tolerated(0.75) benign(0.004) TCGA-BA-A6DA-01 11 68341629 68341629 A G PPP6R3 Missense_Mutation p.N466D 0.11 deleterious(0) benign(0.253) TCGA-BA-A6DA-01 11 73620528 73620528 G A PAAF1 Missense_Mutation p.G206E 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-BA-A6DA-01 11 7981599 7981599 G T NLRP10 Silent p.I520I 0.24 TCGA-BA-A6DA-01 11 94113297 94113297 C A GPR83 3'UTR 0.21 TCGA-BA-A6DA-01 12 101012318 101012318 A G GAS2L3 Missense_Mutation p.I201V 0.11 tolerated(0.48) benign(0.005) TCGA-BA-A6DA-01 12 101017443 101017443 C T GAS2L3 Missense_Mutation p.T287I 0.16 deleterious(0) probably_damaging(0.991) TCGA-BA-A6DA-01 12 111744752 111744752 G T CUX2 Missense_Mutation p.G296C 0.20 tolerated(0.07) probably_damaging(0.976) TCGA-BA-A6DA-01 12 111744815 111744815 G A CUX2 Missense_Mutation p.V317M 0.22 deleterious(0.02) benign(0.02) TCGA-BA-A6DA-01 12 124293437 124293437 C T DNAH10 Silent p.P909P 0.24 TCGA-BA-A6DA-01 12 129566531 129566531 G - TMEM132D Frame_Shift_Del p.R566Afs*15 0.19 TCGA-BA-A6DA-01 12 129694087 129694087 G C TMEM132D Missense_Mutation p.S474W 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 12 131359090 131359090 G A RAN Splice_Site p.X83_splice 0.27 TCGA-BA-A6DA-01 12 132611249 132611249 G C RP13-977J11.5 RNA 0.26 TCGA-BA-A6DA-01 12 14796620 14796620 G T GUCY2C Silent p.S606S 0.14 TCGA-BA-A6DA-01 12 21467549 21467549 C G SLCO1A2 Missense_Mutation p.G90A 0.11 tolerated(0.87) benign(0.252) TCGA-BA-A6DA-01 12 22061099 22061099 G T ABCC9 Missense_Mutation p.A456E 0.13 deleterious(0) probably_damaging(0.949) TCGA-BA-A6DA-01 12 22063220 22063220 C G ABCC9 Missense_Mutation p.R397S 0.22 deleterious(0) possibly_damaging(0.784) TCGA-BA-A6DA-01 12 22068766 22068766 G T ABCC9 Missense_Mutation p.P218T 0.29 deleterious(0.04) probably_damaging(0.948) TCGA-BA-A6DA-01 12 22440119 22440119 G T ST8SIA1 Missense_Mutation p.F115L 0.19 tolerated(1) benign(0.002) TCGA-BA-A6DA-01 12 27235198 27235198 T A C12orf71 Missense_Mutation p.Q73H 0.15 tolerated(0.08) possibly_damaging(0.568) TCGA-BA-A6DA-01 12 29509320 29509320 C A ERGIC2 Silent p.V189V 0.18 TCGA-BA-A6DA-01 12 29670487 29670487 T A TMTC1 Missense_Mutation p.H681L 0.16 deleterious(0.03) benign(0.027) TCGA-BA-A6DA-01 12 30802157 30802157 C A IPO8 Nonsense_Mutation p.G728* 0.25 TCGA-BA-A6DA-01 12 30827001 30827001 T - IPO8 Frame_Shift_Del p.S278Afs*17 0.20 TCGA-BA-A6DA-01 12 40631906 40631906 G T LRRK2 Splice_Site p.X191_splice 0.11 TCGA-BA-A6DA-01 12 41967120 41967120 G C PDZRN4 Missense_Mutation p.A847P 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-BA-A6DA-01 12 4479658 4479658 G T FGF23 Missense_Mutation p.P203T 0.37 deleterious(0.04) possibly_damaging(0.541) TCGA-BA-A6DA-01 12 4488609 4488609 G C FGF23 Missense_Mutation p.A47G 0.10 tolerated(0.23) benign(0.043) TCGA-BA-A6DA-01 12 46244778 46244778 C T ARID2 Nonsense_Mutation p.Q958* 0.19 TCGA-BA-A6DA-01 12 5021088 5021088 G C KCNA1 Missense_Mutation p.V182L 0.24 tolerated(0.09) probably_damaging(0.953) TCGA-BA-A6DA-01 12 52685169 52685169 G A KRT81 Silent p.I27I 0.31 TCGA-BA-A6DA-01 12 52825337 52825337 A G KRT75 Missense_Mutation p.V287A 0.22 deleterious(0.02) benign(0.038) TCGA-BA-A6DA-01 12 52938504 52938504 C T KRT71 Missense_Mutation p.G462S 0.22 tolerated(0.28) benign(0.002) TCGA-BA-A6DA-01 12 54902239 54902239 C T NCKAP1L Missense_Mutation p.L144F 0.24 deleterious(0.03) benign(0.429) TCGA-BA-A6DA-01 12 56031284 56031284 C A OR10P1 Silent p.A203A 0.20 TCGA-BA-A6DA-01 12 57323207 57323207 G T SDR9C7 Silent p.R231R 0.26 TCGA-BA-A6DA-01 12 64784226 64784226 G T C12orf56 Silent p.I40I 0.13 TCGA-BA-A6DA-01 12 6787360 6787360 T G ZNF384 Missense_Mutation p.M207L 0.15 tolerated(1) benign(0.003) TCGA-BA-A6DA-01 12 70004253 70004253 G T LRRC10 Missense_Mutation p.N122K 0.22 tolerated(0.36) benign(0.032) TCGA-BA-A6DA-01 12 70065252 70065252 A C BEST3 Silent p.A352A 0.26 TCGA-BA-A6DA-01 12 70149189 70149189 A G RAB3IP Missense_Mutation p.M17V 0.13 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-BA-A6DA-01 12 70150373 70150373 G T RAB3IP Missense_Mutation p.S163I 0.19 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 12 72372829 72372829 C T TPH2 Silent p.Y301Y 0.22 TCGA-BA-A6DA-01 12 78444905 78444905 A G NAV3 Missense_Mutation p.R832G 0.26 deleterious(0.01) possibly_damaging(0.679) TCGA-BA-A6DA-01 12 81545826 81545826 A G ACSS3 Missense_Mutation p.Y350C 0.16 deleterious(0) probably_damaging(0.981) TCGA-BA-A6DA-01 12 81839411 81839411 G A PPFIA2 Missense_Mutation p.S165L 0.22 deleterious(0) benign(0.085) TCGA-BA-A6DA-01 12 8608728 8608728 T A CLEC6A Silent p.P7P 0.12 TCGA-BA-A6DA-01 12 88478512 88478512 T C CEP290 Missense_Mutation p.I1519V 0.12 benign(0.069) TCGA-BA-A6DA-01 12 94618070 94618070 C A PLXNC1 Missense_Mutation p.T590N 0.17 tolerated(0.24) benign(0.265) TCGA-BA-A6DA-01 12 94761893 94761893 C G CCDC41 Missense_Mutation p.R378P 0.25 deleterious(0) probably_damaging(0.909) TCGA-BA-A6DA-01 13 102029073 102029073 C G NALCN Missense_Mutation p.V208L 0.30 deleterious(0) probably_damaging(0.98) TCGA-BA-A6DA-01 13 102250524 102250524 G A ITGBL1 Missense_Mutation p.G297E 0.12 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 13 103527879 103527879 A T ERCC5 Missense_Mutation p.T1063S 0.29 tolerated(0.67) benign(0.003) TCGA-BA-A6DA-01 13 31711637 31711637 C A HSPH1 Missense_Mutation p.V799F 0.29 deleterious(0) benign(0.304) TCGA-BA-A6DA-01 13 38211053 38211053 G T TRPC4 Missense_Mutation p.T979N 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.649) TCGA-BA-A6DA-01 13 41885710 41885710 C T NAA16 Missense_Mutation p.R16C 0.33 deleterious(0.04) benign(0.008) TCGA-BA-A6DA-01 13 43918804 43918804 C A ENOX1 Missense_Mutation p.Q302H 0.29 tolerated(0.54) benign(0.001) TCGA-BA-A6DA-01 13 49924927 49924927 C A CAB39L Nonsense_Mutation p.E173* 0.35 TCGA-BA-A6DA-01 13 53420407 53420407 G A PCDH8 Missense_Mutation p.A722V 0.27 tolerated(0.64) benign(0.05) TCGA-BA-A6DA-01 14 105419118 105419118 C A AHNAK2 Silent p.L890L 0.42 TCGA-BA-A6DA-01 14 106109690 106109690 C T IGHG2 Silent p.L277L 0.10 TCGA-BA-A6DA-01 14 106453073 106453073 C A IGHV1-2 Missense_Mutation p.A12S 0.40 tolerated(0.25) benign(0.17) TCGA-BA-A6DA-01 14 106805385 106805385 G T IGHV4-31 Missense_Mutation p.Q60K 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.711) TCGA-BA-A6DA-01 14 107078386 107078386 T C IGHV1-58 Missense_Mutation p.Y113C 0.46 probably_damaging(0.999) TCGA-BA-A6DA-01 14 107114180 107114180 C A IGHV3-64 Silent p.L6L 0.19 TCGA-BA-A6DA-01 14 19553629 19553629 G T POTEG Missense_Mutation p.W71C 0.16 tolerated_low_confidence(1) benign(0) TCGA-BA-A6DA-01 14 20296315 20296315 C A OR4N2 Silent p.A236A 0.23 TCGA-BA-A6DA-01 14 20389118 20389118 T A OR4K5 Missense_Mutation p.M118K 0.15 deleterious(0) benign(0.234) TCGA-BA-A6DA-01 14 20482659 20482659 C T OR4K14 Missense_Mutation p.G232S 0.41 tolerated(0.52) benign(0.005) TCGA-BA-A6DA-01 14 20502751 20502751 T C OR4K13 Missense_Mutation p.H56R 0.17 deleterious(0.02) benign(0.003) TCGA-BA-A6DA-01 14 20528935 20528935 C T OR4L1 Silent p.I244I 0.15 TCGA-BA-A6DA-01 14 21463373 21463373 C T METTL17 Missense_Mutation p.A309V 0.17 deleterious(0.05) probably_damaging(1) TCGA-BA-A6DA-01 14 21873986 21873986 T C CHD8 Missense_Mutation p.N982S 0.45 deleterious(0) probably_damaging(0.992) TCGA-BA-A6DA-01 14 23311709 23311709 G T MMP14 Silent p.L157L 0.11 TCGA-BA-A6DA-01 14 24044921 24044921 C T JPH4 Missense_Mutation p.R375H 0.30 deleterious(0.01) possibly_damaging(0.801) TCGA-BA-A6DA-01 14 24729847 24729847 C - TGM1 Frame_Shift_Del p.G189Afs*17 0.13 TCGA-BA-A6DA-01 14 30105519 30105519 G T PRKD1 Missense_Mutation p.H389Q 0.16 tolerated(0.61) benign(0) TCGA-BA-A6DA-01 14 38724166 38724166 C A CLEC14A Silent p.T354T 0.18 TCGA-BA-A6DA-01 14 42355882 42355882 G A LRFN5 Silent p.Q18Q 0.17 TCGA-BA-A6DA-01 14 50159966 50159966 C G KLHDC1 Silent p.A18A 0.15 TCGA-BA-A6DA-01 14 53347986 53347986 A G FERMT2 Missense_Mutation p.L243P 0.15 tolerated(0.05) probably_damaging(0.925) TCGA-BA-A6DA-01 14 54417051 54417051 C A BMP4 Missense_Mutation p.R309L 0.21 deleterious(0) probably_damaging(0.95) TCGA-BA-A6DA-01 14 58471391 58471391 T C C14orf37 3'UTR 0.43 TCGA-BA-A6DA-01 14 60212950 60212950 G T RTN1 Missense_Mutation p.S164Y 0.40 deleterious(0) possibly_damaging(0.87) TCGA-BA-A6DA-01 14 67647535 67647535 A T GPHN Missense_Mutation p.S731C 0.51 deleterious(0) probably_damaging(0.995) TCGA-BA-A6DA-01 14 67812559 67812559 C G ATP6V1D Missense_Mutation p.G128R 0.10 deleterious(0) probably_damaging(0.986) TCGA-BA-A6DA-01 14 73159872 73159872 A T DPF3 Silent p.A218A 0.43 TCGA-BA-A6DA-01 14 75375585 75375585 C A RPS6KL1 Missense_Mutation p.G471W 0.30 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 14 80158584 80158584 G A NRXN3 Intron 0.54 TCGA-BA-A6DA-01 14 81422014 81422015 - C TSHR 5'UTR 0.26 TCGA-BA-A6DA-01 14 81646661 81646661 T A GTF2A1 Missense_Mutation p.K346I 0.14 deleterious(0) probably_damaging(0.995) TCGA-BA-A6DA-01 14 92413642 92413642 T G FBLN5 5'UTR 0.55 TCGA-BA-A6DA-01 14 94071303 94071303 G T UNC79 Intron 0.17 TCGA-BA-A6DA-01 14 96784149 96784149 G T ATG2B Missense_Mutation p.P975T 0.43 deleterious(0) probably_damaging(0.939) TCGA-BA-A6DA-01 15 22382703 22382703 G T OR4N4 Silent p.V77V 0.14 TCGA-BA-A6DA-01 15 23108851 23108851 C A RP11-566K19.6 RNA 0.19 TCGA-BA-A6DA-01 15 23299992 23299992 A G HERC2P2 RNA 0.19 TCGA-BA-A6DA-01 15 23811081 23811081 C A MKRN3 Missense_Mutation p.A51E 0.24 tolerated(1) benign(0.002) TCGA-BA-A6DA-01 15 23811368 23811368 G T MKRN3 Missense_Mutation p.A147S 0.18 tolerated(0.23) benign(0.014) TCGA-BA-A6DA-01 15 24921354 24921354 G C NPAP1 Missense_Mutation p.V114L 0.19 deleterious(0.03) benign(0.394) TCGA-BA-A6DA-01 15 24923625 24923625 G T NPAP1 Missense_Mutation p.V871F 0.22 tolerated(0.06) possibly_damaging(0.449) TCGA-BA-A6DA-01 15 25326268 25326268 C A SNORD116-12 3'Flank 0.36 TCGA-BA-A6DA-01 15 25474171 25474171 G C SNORD115-32 RNA 0.20 TCGA-BA-A6DA-01 15 25475852 25475852 C G SNORD115-33 5'Flank 0.26 TCGA-BA-A6DA-01 15 26825522 26825522 G A GABRB3 Missense_Mutation p.P209L 0.27 deleterious(0) probably_damaging(0.982) TCGA-BA-A6DA-01 15 29346507 29346507 G A APBA2 Silent p.E140E 0.20 TCGA-BA-A6DA-01 15 34640379 34640379 G A NUTM1 Missense_Mutation p.G76R 0.23 deleterious(0.02) benign(0.182) TCGA-BA-A6DA-01 15 35086990 35086990 G T ACTC1 Missense_Mutation p.T7N 0.19 tolerated_low_confidence(0.29) benign(0.002) TCGA-BA-A6DA-01 15 40710403 40710403 G T IVD Missense_Mutation p.G408W 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 15 42042113 42042113 A C MGA Missense_Mutation p.K2103T 0.23 tolerated_low_confidence(0.17) benign(0.044) TCGA-BA-A6DA-01 15 42169093 42169093 C A SPTBN5 Silent p.R1255R 0.17 TCGA-BA-A6DA-01 15 43252873 43252873 T G UBR1 Missense_Mutation p.N1576T 0.26 tolerated(0.39) benign(0.021) TCGA-BA-A6DA-01 15 50596258 50596258 C T GABPB1 Missense_Mutation p.G61S 0.26 deleterious(0.01) benign(0.406) TCGA-BA-A6DA-01 15 51975582 51975582 G T SCG3 Silent p.L116L 0.24 TCGA-BA-A6DA-01 15 53081360 53081360 A G ONECUT1 Missense_Mutation p.M241T 0.25 tolerated(0.13) possibly_damaging(0.468) TCGA-BA-A6DA-01 15 53997322 53997322 G C WDR72 Missense_Mutation p.T404S 0.28 tolerated(0.82) benign(0.006) TCGA-BA-A6DA-01 15 56152955 56152955 C G NEDD4 Missense_Mutation p.E579D 0.10 tolerated(0.61) benign(0.005) TCGA-BA-A6DA-01 15 62167138 62167138 C T VPS13C Missense_Mutation p.G3451S 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 15 63076078 63076078 G T TLN2 Nonsense_Mutation p.E1909* 0.21 TCGA-BA-A6DA-01 15 65621219 65621219 C A IGDCC3 3'UTR 0.23 TCGA-BA-A6DA-01 15 71124778 71124778 C A LARP6 Silent p.P363P 0.20 TCGA-BA-A6DA-01 15 73580727 73580727 G C NEO1 Missense_Mutation p.D1162H 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 15 78305432 78305432 C A TBC1D2B Missense_Mutation p.R668L 0.25 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 15 78454573 78454573 C T IDH3A Intron 0.20 TCGA-BA-A6DA-01 15 81625254 81625254 G C TMC3 Missense_Mutation p.P937A 0.23 tolerated_low_confidence(0.5) benign(0.008) TCGA-BA-A6DA-01 15 86940702 86940702 T C AGBL1 Missense_Mutation p.V781A 0.17 tolerated(0.16) benign(0.081) TCGA-BA-A6DA-01 16 10788335 10788335 C G TEKT5 Missense_Mutation p.Q132H 0.24 deleterious(0.02) benign(0.246) TCGA-BA-A6DA-01 16 20331707 20331707 C T GP2 Silent p.L248L 0.34 TCGA-BA-A6DA-01 16 20636822 20636822 C T ACSM1 Missense_Mutation p.V484I 0.23 deleterious(0.04) possibly_damaging(0.465) TCGA-BA-A6DA-01 16 20996903 20996903 C A DNAH3 Silent p.V2387V 0.21 TCGA-BA-A6DA-01 16 21190859 21190859 G C TMEM159 Missense_Mutation p.E156D 0.18 tolerated_low_confidence(0.39) benign(0.001) TCGA-BA-A6DA-01 16 28502858 28502858 G T CLN3 Silent p.R24R 0.16 TCGA-BA-A6DA-01 16 30990627 30990627 G T SETD1A Nonsense_Mutation p.E1174* 0.22 TCGA-BA-A6DA-01 16 30991330 30991330 C T SETD1A Missense_Mutation p.P1408L 0.50 unknown(0) TCGA-BA-A6DA-01 16 3140535 3140535 C A ZSCAN10 Silent p.P245P 0.21 TCGA-BA-A6DA-01 16 32077425 32077425 C A IGHV3OR16-9 Missense_Mutation p.P14T 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-BA-A6DA-01 16 48172225 48172225 C A ABCC12 Missense_Mutation p.R298L 0.38 deleterious(0) probably_damaging(0.995) TCGA-BA-A6DA-01 16 48201063 48201063 C - ABCC11 3'UTR 0.14 TCGA-BA-A6DA-01 16 48595715 48595715 C G N4BP1 Missense_Mutation p.R280T 0.19 deleterious(0) possibly_damaging(0.786) TCGA-BA-A6DA-01 16 4910698 4910698 G C UBN1 Missense_Mutation p.K235N 0.20 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 16 50746062 50746062 A T NOD2 Missense_Mutation p.Y747F 0.42 deleterious(0.05) possibly_damaging(0.873) TCGA-BA-A6DA-01 16 51175728 51175728 G T SALL1 Missense_Mutation p.S135R 0.44 tolerated(0.25) benign(0.228) TCGA-BA-A6DA-01 16 54967799 54967799 G T IRX5 3'UTR 0.20 TCGA-BA-A6DA-01 16 56660853 56660853 G T MT1E Silent p.G52G 0.18 TCGA-BA-A6DA-01 16 66977827 66977827 G T CES2 Missense_Mutation p.G591C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 16 67685183 67685183 G T RLTPR Nonsense_Mutation p.E760* 0.25 TCGA-BA-A6DA-01 16 69959308 69959308 G T WWP2 Intron 0.15 TCGA-BA-A6DA-01 16 70721966 70721966 G C VAC14 Silent p.S738S 0.16 TCGA-BA-A6DA-01 16 70894073 70894073 G T HYDIN Nonsense_Mutation p.Y4009* 0.27 TCGA-BA-A6DA-01 16 708987 708987 G T WDR90 Missense_Mutation p.W996L 0.21 deleterious(0.03) probably_damaging(0.995) TCGA-BA-A6DA-01 16 74678452 74678452 C A RFWD3 Missense_Mutation p.R325L 0.19 tolerated(0.06) possibly_damaging(0.889) TCGA-BA-A6DA-01 16 75203914 75203914 A G ZFP1 Silent p.A302A 0.11 TCGA-BA-A6DA-01 16 75665647 75665647 T A KARS Missense_Mutation p.Y369F 0.22 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 16 77356295 77356296 - T ADAMTS18 Frame_Shift_Ins p.V701Sfs*13 0.14 TCGA-BA-A6DA-01 16 83982952 83982952 G T OSGIN1 5'UTR 0.33 TCGA-BA-A6DA-01 16 85691140 85691140 G C GSE1 Missense_Mutation p.E524Q 0.33 tolerated(0.11) possibly_damaging(0.562) TCGA-BA-A6DA-01 16 89347383 89347383 C A ANKRD11 Missense_Mutation p.G1856V 0.20 probably_damaging(0.995) TCGA-BA-A6DA-01 16 89347570 89347570 C A ANKRD11 Missense_Mutation p.D1794Y 0.24 probably_damaging(1) TCGA-BA-A6DA-01 17 10395709 10395709 G T MYH1 3'UTR 0.25 TCGA-BA-A6DA-01 17 10424617 10424617 T C MYH2 Missense_Mutation p.K1936E 0.28 deleterious_low_confidence(0.02) benign(0.03) TCGA-BA-A6DA-01 17 10426819 10426819 C T MYH2 Silent p.E1822E 0.23 TCGA-BA-A6DA-01 17 19316364 19316364 G T RNF112 Missense_Mutation p.R165S 0.16 tolerated(0.14) probably_damaging(0.912) TCGA-BA-A6DA-01 17 25752524 25752524 C G TBC1D3P5 RNA 0.12 TCGA-BA-A6DA-01 17 26943725 26943725 T C KIAA0100 Missense_Mutation p.H2023R 0.24 tolerated(0.45) benign(0.05) TCGA-BA-A6DA-01 17 3119621 3119621 C T OR1A1 Missense_Mutation p.A236V 0.25 deleterious(0.03) benign(0.309) TCGA-BA-A6DA-01 17 35985972 35985972 C A DDX52 Missense_Mutation p.D369Y 0.23 deleterious(0.01) probably_damaging(0.947) TCGA-BA-A6DA-01 17 36358907 36358907 C G RP11-1407O15.2 Missense_Mutation p.D262H 0.09 TCGA-BA-A6DA-01 17 39388967 39388967 C A KRTAP9-3 Missense_Mutation p.Q72K 0.23 tolerated(0.16) unknown(0) TCGA-BA-A6DA-01 17 39635232 39635232 G T KRT35 Missense_Mutation p.R243S 0.24 deleterious(0.03) probably_damaging(0.916) TCGA-BA-A6DA-01 17 40042498 40042498 G A ACLY Silent p.L647L 0.25 TCGA-BA-A6DA-01 17 40315277 40315277 C T KCNH4 Silent p.L851L 0.31 TCGA-BA-A6DA-01 17 43483119 43483119 C A ARHGAP27 5'UTR 0.29 TCGA-BA-A6DA-01 17 45914284 45914284 C A LRRC46 Missense_Mutation p.A255E 0.20 tolerated(1) benign(0.001) TCGA-BA-A6DA-01 17 46148710 46148710 C T CBX1 3'UTR 0.21 TCGA-BA-A6DA-01 17 46700292 46700292 C T HOXB9 Silent p.K241K 0.19 TCGA-BA-A6DA-01 17 56270806 56270806 C A EPX Missense_Mutation p.A82D 0.24 tolerated(0.66) benign(0.424) TCGA-BA-A6DA-01 17 56356775 56356775 C A MPO Silent p.T187T 0.26 TCGA-BA-A6DA-01 17 56598262 56598262 C T SEPT4 Intron 0.23 TCGA-BA-A6DA-01 17 56651595 56651595 T C TEX14 Silent p.Q1158Q 0.20 TCGA-BA-A6DA-01 17 57158574 57158574 C G TRIM37 Missense_Mutation p.G126R 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-BA-A6DA-01 17 57292352 57292352 G T SMG8 Missense_Mutation p.V989L 0.19 tolerated_low_confidence(0.25) benign(0.009) TCGA-BA-A6DA-01 17 61600718 61600718 C A KCNH6 5'Flank 0.23 TCGA-BA-A6DA-01 17 61830158 61830158 C A CCDC47 Nonsense_Mutation p.E346* 0.26 TCGA-BA-A6DA-01 17 61830159 61830159 C A CCDC47 Missense_Mutation p.E345D 0.26 tolerated(0.1) benign(0.038) TCGA-BA-A6DA-01 17 64785040 64785040 G A PRKCA Silent p.R599R 0.17 TCGA-BA-A6DA-01 17 68171335 68171335 G T KCNJ2 Missense_Mutation p.G52V 0.15 deleterious(0) probably_damaging(0.993) TCGA-BA-A6DA-01 17 6978672 6978672 C G CLEC10A Intron 0.21 TCGA-BA-A6DA-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.47 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 17 7942415 7942415 G - ALOX15B 5'UTR 0.15 TCGA-BA-A6DA-01 17 79428113 79428113 C A RP11-1055B8.7 Missense_Mutation p.H2142N 0.32 probably_damaging(0.991) TCGA-BA-A6DA-01 17 9674818 9674818 G T DHRS7C Missense_Mutation p.P309Q 0.17 tolerated(0.14) benign(0.174) TCGA-BA-A6DA-01 18 10471535 10471535 T G APCDD1 Missense_Mutation p.V84G 0.26 deleterious(0) probably_damaging(0.983) TCGA-BA-A6DA-01 18 14542630 14542630 T C POTEC Silent p.Q172Q 0.26 TCGA-BA-A6DA-01 18 21489242 21489242 A C LAMA3 Silent p.R2381R 0.24 TCGA-BA-A6DA-01 18 23612435 23612435 C T SS18 Silent p.Q386Q 0.22 TCGA-BA-A6DA-01 18 29890206 29890206 C A GAREM Missense_Mutation p.A115S 0.25 tolerated(0.15) benign(0.241) TCGA-BA-A6DA-01 18 31325740 31325740 T C ASXL3 Silent p.S1976S 0.21 TCGA-BA-A6DA-01 18 320024 320024 A T COLEC12 3'UTR 0.20 TCGA-BA-A6DA-01 18 32886941 32886941 G C ZNF271 RNA 0.33 TCGA-BA-A6DA-01 18 56825879 56825879 G C SEC11C Missense_Mutation p.V181L 0.13 tolerated(0.66) benign(0.001) TCGA-BA-A6DA-01 18 64239253 64239253 G T CDH19 Silent p.I63I 0.17 TCGA-BA-A6DA-01 18 65180507 65180507 C T DSEL Missense_Mutation p.D457N 0.22 deleterious(0.05) possibly_damaging(0.69) TCGA-BA-A6DA-01 18 66542022 66542022 G T CCDC102B Missense_Mutation p.E351D 0.23 deleterious(0.02) possibly_damaging(0.886) TCGA-BA-A6DA-01 18 7231139 7231139 G A LRRC30 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.914) TCGA-BA-A6DA-01 18 9549283 9549283 C A PPP4R1 Missense_Mutation p.M867I 0.22 deleterious(0) benign(0.094) TCGA-BA-A6DA-01 19 10394801 10394801 C T ICAM1 Missense_Mutation p.P244S 0.10 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 19 10403431 10403431 C T ICAM5 Nonsense_Mutation p.Q369* 0.08 TCGA-BA-A6DA-01 19 11796295 11796295 A T ZNF833P RNA 0.23 TCGA-BA-A6DA-01 19 12221239 12221239 C A ZNF788 Silent p.A61A 0.24 TCGA-BA-A6DA-01 19 15132649 15132649 C T CCDC105 Missense_Mutation p.A390V 0.23 deleterious(0) benign(0.215) TCGA-BA-A6DA-01 19 16860285 16860285 C T NWD1 Missense_Mutation p.L278F 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-BA-A6DA-01 19 17766766 17766766 G - UNC13A Frame_Shift_Del p.K404Sfs*100 0.23 TCGA-BA-A6DA-01 19 18391494 18391494 C A JUND Missense_Mutation p.E267D 0.44 deleterious(0.02) probably_damaging(0.942) TCGA-BA-A6DA-01 19 19257421 19257421 T C MEF2B Missense_Mutation p.T238A 0.29 tolerated(1) benign(0) TCGA-BA-A6DA-01 19 19681102 19681102 G A PBX4 Missense_Mutation p.R150C 0.25 deleterious(0.05) possibly_damaging(0.849) TCGA-BA-A6DA-01 19 21720496 21720496 C G ZNF429 Missense_Mutation p.N547K 0.29 tolerated(0.45) benign(0.019) TCGA-BA-A6DA-01 19 21720669 21720669 C T ZNF429 Missense_Mutation p.S605F 0.16 tolerated(0.36) benign(0.01) TCGA-BA-A6DA-01 19 22156106 22156106 A C ZNF208 Missense_Mutation p.V577G 0.17 tolerated(1) benign(0) TCGA-BA-A6DA-01 19 22951156 22951156 C A ZNF99 Silent p.G59G 0.30 TCGA-BA-A6DA-01 19 24010579 24010579 G C RPSAP58 Missense_Mutation p.D206H 0.18 deleterious(0) probably_damaging(0.933) TCGA-BA-A6DA-01 19 29698651 29698651 C A UQCRFS1 Missense_Mutation p.W210L 0.23 deleterious(0) probably_damaging(0.993) TCGA-BA-A6DA-01 19 30935177 30935177 C T ZNF536 Silent p.A236A 0.41 TCGA-BA-A6DA-01 19 30935392 30935392 C A ZNF536 Missense_Mutation p.A308E 0.29 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 19 3557192 3557192 C A MFSD12 Silent p.G70G 0.30 TCGA-BA-A6DA-01 19 35804288 35804288 A G MAG Silent p.K604K 0.29 TCGA-BA-A6DA-01 19 36019126 36019126 A T SBSN Missense_Mutation p.S20T 0.20 deleterious(0) benign(0.001) TCGA-BA-A6DA-01 19 36361823 36361823 G A APLP1 Missense_Mutation p.R106H 0.16 tolerated(0.08) probably_damaging(0.997) TCGA-BA-A6DA-01 19 36398448 36398448 C A TYROBP Silent p.L43L 0.21 TCGA-BA-A6DA-01 19 36884837 36884837 T C ZFP82 Silent p.E135E 0.22 TCGA-BA-A6DA-01 19 37619640 37619640 G T ZNF420 Nonsense_Mutation p.G583* 0.21 TCGA-BA-A6DA-01 19 37646793 37646793 C A CTC-454I21.3 Missense_Mutation p.G77V 0.30 tolerated(0.17) possibly_damaging(0.714) TCGA-BA-A6DA-01 19 38713074 38713074 G A DPF1 Missense_Mutation p.P101L 0.26 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 19 40098061 40098061 A G LGALS13 3'UTR 0.27 TCGA-BA-A6DA-01 19 41594863 41594863 C T CYP2A13 Silent p.T70T 0.27 TCGA-BA-A6DA-01 19 4168375 4168375 C T CREB3L3 Missense_Mutation p.R248C 0.24 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 19 42492683 42492683 T G ATP1A3 Missense_Mutation p.K26T 0.26 tolerated(0.07) probably_damaging(0.968) TCGA-BA-A6DA-01 19 43093794 43093794 T C CEACAM8 Missense_Mutation p.N173S 0.22 tolerated(0.22) benign(0.09) TCGA-BA-A6DA-01 19 4548115 4548115 C T SEMA6B Missense_Mutation p.G509S 0.30 tolerated(0.83) benign(0.003) TCGA-BA-A6DA-01 19 46289271 46289271 T A DMWD Missense_Mutation p.S495C 0.32 deleterious(0) possibly_damaging(0.869) TCGA-BA-A6DA-01 19 46299114 46299114 T C RSPH6A 3'UTR 0.27 TCGA-BA-A6DA-01 19 47597769 47597769 C G ZC3H4 Missense_Mutation p.K86N 0.26 probably_damaging(0.983) TCGA-BA-A6DA-01 19 48946544 48946544 C T GRIN2D Silent p.L1121L 0.18 TCGA-BA-A6DA-01 19 49813424 49813424 C A SLC6A16 Splice_Site p.X192_splice 0.33 TCGA-BA-A6DA-01 19 51379788 51379788 G A KLK2 Silent p.R89R 0.23 TCGA-BA-A6DA-01 19 51770669 51770669 G A SIGLECL1 Silent p.A151A 0.25 TCGA-BA-A6DA-01 19 52216930 52216930 A G HAS1 Missense_Mutation p.L496P 0.33 deleterious(0.01) possibly_damaging(0.862) TCGA-BA-A6DA-01 19 52955026 52955026 T G ZNF578 5'Flank 0.31 TCGA-BA-A6DA-01 19 53086179 53086179 G T ZNF701 Missense_Mutation p.K355N 0.19 deleterious(0.02) possibly_damaging(0.466) TCGA-BA-A6DA-01 19 53086180 53086180 G T ZNF701 Missense_Mutation p.A356S 0.18 deleterious(0.04) benign(0.173) TCGA-BA-A6DA-01 19 53311383 53311383 G C ZNF28 Missense_Mutation p.L7V 0.21 tolerated(0.5) probably_damaging(0.978) TCGA-BA-A6DA-01 19 53770743 53770743 C A VN1R4 Missense_Mutation p.C59F 0.25 tolerated(0.13) benign(0.017) TCGA-BA-A6DA-01 19 53793392 53793392 T C BIRC8 Missense_Mutation p.N79S 0.23 tolerated(0.08) benign(0.126) TCGA-BA-A6DA-01 19 53856450 53856450 G A ZNF845 Missense_Mutation p.R841H 0.16 tolerated(0.06) benign(0.339) TCGA-BA-A6DA-01 19 53945972 53945972 G C TPM3P9 RNA 0.42 TCGA-BA-A6DA-01 19 54445349 54445349 C G CACNG7 Nonsense_Mutation p.Y210* 0.21 TCGA-BA-A6DA-01 19 54611361 54611361 G C TFPT Missense_Mutation p.A205G 0.17 tolerated(0.41) benign(0.002) TCGA-BA-A6DA-01 19 54799987 54799987 C A LILRA3 3'UTR 0.32 TCGA-BA-A6DA-01 19 54968077 54968077 C T LENG8 Missense_Mutation p.P570S 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-BA-A6DA-01 19 55019138 55019138 C - LAIR2 Frame_Shift_Del p.P35Qfs*4 0.20 TCGA-BA-A6DA-01 19 55221608 55221608 A T AC098784.2 3'Flank 0.09 TCGA-BA-A6DA-01 19 55501470 55501470 T C NLRP2 Missense_Mutation p.V816A 0.26 deleterious(0) possibly_damaging(0.534) TCGA-BA-A6DA-01 19 55751267 55751267 T A PPP6R1 Missense_Mutation p.E497V 0.20 deleterious(0) possibly_damaging(0.491) TCGA-BA-A6DA-01 19 56307532 56307532 G A NLRP11 Silent p.T752T 0.26 TCGA-BA-A6DA-01 19 56466062 56466062 G C NLRP8 Missense_Mutation p.G213A 0.20 deleterious(0.01) probably_damaging(0.961) TCGA-BA-A6DA-01 19 56701171 56701171 G A ZSCAN5B 3'UTR 0.27 TCGA-BA-A6DA-01 19 56935052 56935052 A G ZNF583 Missense_Mutation p.H342R 0.18 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 19 56953128 56953128 C A ZNF667 Missense_Mutation p.K412N 0.17 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DA-01 19 57132710 57132710 G T ZNF71 Missense_Mutation p.G19W 0.27 tolerated(0.19) benign(0.001) TCGA-BA-A6DA-01 19 57641807 57641807 T A USP29 Missense_Mutation p.S588R 0.18 tolerated(0.28) possibly_damaging(0.601) TCGA-BA-A6DA-01 19 58806088 58806088 G A ZNF8 Missense_Mutation p.R305H 0.14 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 19 6710813 6710813 C A C3 Missense_Mutation p.R508L 0.27 deleterious(0) probably_damaging(0.974) TCGA-BA-A6DA-01 1 103363709 103363709 G C COL11A1 Missense_Mutation p.A1425G 0.33 unknown(0) TCGA-BA-A6DA-01 1 104112830 104112830 G A AMY2B Intron 0.13 TCGA-BA-A6DA-01 1 110754352 110754352 T A KCNC4 Missense_Mutation p.D77E 0.22 deleterious(0.01) benign(0.037) TCGA-BA-A6DA-01 1 11106734 11106734 C A MASP2 Silent p.T97T 0.19 TCGA-BA-A6DA-01 1 111969254 111969254 T C OVGP1 Missense_Mutation p.H22R 0.20 deleterious(0.01) possibly_damaging(0.588) TCGA-BA-A6DA-01 1 113010142 113010142 T G WNT2B 5'UTR 0.35 TCGA-BA-A6DA-01 1 11333601 11333601 C G UBIAD1 Missense_Mutation p.Q5E 0.23 tolerated_low_confidence(0.43) benign(0.006) TCGA-BA-A6DA-01 1 115222277 115222277 G A AMPD1 Missense_Mutation p.H307Y 0.23 tolerated(0.18) probably_damaging(0.999) TCGA-BA-A6DA-01 1 115231344 115231344 C A AMPD1 Missense_Mutation p.R51L 0.19 deleterious(0) benign(0.087) TCGA-BA-A6DA-01 1 115268984 115268984 T C CSDE1 Silent p.K542K 0.29 TCGA-BA-A6DA-01 1 118558728 118558728 C A SPAG17 Missense_Mutation p.V1383L 0.32 tolerated(0.22) benign(0.106) TCGA-BA-A6DA-01 1 118635845 118635845 C A SPAG17 Missense_Mutation p.M369I 0.33 deleterious(0.02) benign(0.008) TCGA-BA-A6DA-01 1 120437783 120437783 G T ADAM30 Missense_Mutation p.P393T 0.24 deleterious(0.02) probably_damaging(0.967) TCGA-BA-A6DA-01 1 142713236 142713236 C A RP11-417J8.6 RNA 0.26 TCGA-BA-A6DA-01 1 144952015 144952015 G T PDE4DIP Intron 0.05 TCGA-BA-A6DA-01 1 149906880 149906880 T G MTMR11 Missense_Mutation p.Q156P 0.19 deleterious(0.01) possibly_damaging(0.791) TCGA-BA-A6DA-01 1 150316708 150316708 C T PRPF3 Silent p.H499H 0.13 TCGA-BA-A6DA-01 1 150318543 150318543 G T PRPF3 Missense_Mutation p.A564S 0.19 deleterious(0.03) probably_damaging(0.951) TCGA-BA-A6DA-01 1 155106045 155106045 G A EFNA1 Splice_Site p.X152_splice 0.19 TCGA-BA-A6DA-01 1 156518165 156518165 G C IQGAP3 Missense_Mutation p.S703C 0.21 deleterious(0.05) benign(0.289) TCGA-BA-A6DA-01 1 157805734 157805734 G T CD5L Silent p.V89V 0.18 TCGA-BA-A6DA-01 1 158225991 158225992 AC - CD1A Frame_Shift_Del p.H176Qfs*5 0.19 TCGA-BA-A6DA-01 1 158262662 158262662 G - CD1C Frame_Shift_Del 0.16 TCGA-BA-A6DA-01 1 158435519 158435519 T C OR10K1 Silent p.H56H 0.23 TCGA-BA-A6DA-01 1 159163221 159163221 C G CADM3 Missense_Mutation p.Q165E 0.15 tolerated(1) benign(0.01) TCGA-BA-A6DA-01 1 159175965 159175965 C T DARC Silent p.L248L 0.10 TCGA-BA-A6DA-01 1 159410329 159410329 C T OR10J1 Missense_Mutation p.H261Y 0.19 deleterious(0.03) probably_damaging(1) TCGA-BA-A6DA-01 1 159683289 159683289 G T CRP 3'UTR 0.23 TCGA-BA-A6DA-01 1 160385889 160385889 G - VANGL2 Frame_Shift_Del p.G38Afs*7 0.25 TCGA-BA-A6DA-01 1 161487946 161487946 C T FCGR2A 3'UTR 0.23 TCGA-BA-A6DA-01 1 161953526 161953526 C T OLFML2B Missense_Mutation p.R731H 0.23 deleterious(0.02) probably_damaging(1) TCGA-BA-A6DA-01 1 16351351 16351351 C T CLCNKA Missense_Mutation p.S108L 0.27 deleterious(0.01) benign(0.34) TCGA-BA-A6DA-01 1 169562916 169562916 C A SELP Silent p.A778A 0.17 TCGA-BA-A6DA-01 1 169578749 169578749 G A SELP Silent p.V442V 0.21 TCGA-BA-A6DA-01 1 169993613 169993613 T A KIFAP3 Missense_Mutation p.L322F 0.29 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 1 170967591 170967591 T A MROH9 Intron 0.40 TCGA-BA-A6DA-01 1 170967592 170967592 G T MROH9 Intron 0.40 TCGA-BA-A6DA-01 1 171765941 171765941 C T METTL13 3'UTR 0.17 TCGA-BA-A6DA-01 1 173628228 173628228 A T ANKRD45 Splice_Site p.X110_splice 0.21 TCGA-BA-A6DA-01 1 175048551 175048551 C A TNN Silent p.P164P 0.35 TCGA-BA-A6DA-01 1 176661388 176661388 T C PAPPA2 Missense_Mutation p.I853T 0.22 tolerated(0.52) benign(0.004) TCGA-BA-A6DA-01 1 176668723 176668723 C A PAPPA2 Missense_Mutation p.D1078E 0.21 deleterious(0) possibly_damaging(0.697) TCGA-BA-A6DA-01 1 178427428 178427428 C - RASAL2 Frame_Shift_Del p.P1001Hfs*19 0.17 TCGA-BA-A6DA-01 1 180756961 180756961 A T XPR1 Missense_Mutation p.E65V 0.28 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DA-01 1 190250738 190250738 G A BRINP3 Missense_Mutation p.L127F 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A6DA-01 1 19181196 19181196 G A TAS1R2 Silent p.R256R 0.29 TCGA-BA-A6DA-01 1 196648875 196648875 G T CFH Missense_Mutation p.D248Y 0.20 deleterious(0.04) probably_damaging(0.959) TCGA-BA-A6DA-01 1 196658548 196658548 A T CFH Splice_Site p.X322_splice 0.18 TCGA-BA-A6DA-01 1 197390578 197390578 C A CRB1 Silent p.G540G 0.15 TCGA-BA-A6DA-01 1 198725078 198725078 C A PTPRC Missense_Mutation p.P1230H 0.38 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 1 200143148 200143148 C T NR5A2 Missense_Mutation p.A479V 0.25 tolerated(0.08) benign(0.021) TCGA-BA-A6DA-01 1 20027338 20027338 C A TMCO4 Silent p.A435A 0.18 TCGA-BA-A6DA-01 1 202127307 202127308 AG T PTPN7 Frame_Shift_Del p.L187Ifs*21 0.11 TCGA-BA-A6DA-01 1 207013254 207013254 C T IL19 Silent p.F128F 0.22 TCGA-BA-A6DA-01 1 207286367 207286367 G T C4BPA 5'UTR 0.18 TCGA-BA-A6DA-01 1 207653332 207653332 C T CR2 Missense_Mutation p.A1041V 0.10 tolerated(0.23) benign(0.044) TCGA-BA-A6DA-01 1 21137234 21137234 C T EIF4G3 Missense_Mutation p.A1531T 0.23 deleterious(0) probably_damaging(0.911) TCGA-BA-A6DA-01 1 213414047 213414047 G T RPS6KC1 Missense_Mutation p.G410C 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 1 220345348 220345348 C A RAB3GAP2 Missense_Mutation p.W820C 0.28 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 1 22182345 22182345 G A HSPG2 Missense_Mutation p.P1879L 0.26 benign(0.158) TCGA-BA-A6DA-01 1 22925396 22925396 G T EPHA8 Missense_Mutation p.M748I 0.14 deleterious(0) possibly_damaging(0.779) TCGA-BA-A6DA-01 1 233511632 233511632 G T MLK4 Intron 0.21 TCGA-BA-A6DA-01 1 233511633 233511633 G T MLK4 Intron 0.21 TCGA-BA-A6DA-01 1 23519781 23519781 A T HTR1D Missense_Mutation p.I311N 0.22 deleterious(0) probably_damaging(0.912) TCGA-BA-A6DA-01 1 237540622 237540622 G A RYR2 Splice_Site p.X155_splice 0.16 TCGA-BA-A6DA-01 1 237870370 237870370 C G RYR2 Silent p.V3234V 0.20 TCGA-BA-A6DA-01 1 240656401 240656401 G T GREM2 Silent p.P125P 0.27 TCGA-BA-A6DA-01 1 241767853 241767853 C A OPN3 Silent p.V134V 0.18 TCGA-BA-A6DA-01 1 244574618 244574618 C A ADSS Missense_Mutation p.R430L 0.24 tolerated(0.14) possibly_damaging(0.591) TCGA-BA-A6DA-01 1 247040480 247040480 G T AHCTF1 Missense_Mutation p.P938T 0.21 tolerated(0.06) possibly_damaging(0.749) TCGA-BA-A6DA-01 1 247608040 247608040 G T NLRP3 Silent p.L976L 0.31 TCGA-BA-A6DA-01 1 247608042 247608042 G T NLRP3 Missense_Mutation p.G977V 0.31 tolerated(0.15) possibly_damaging(0.846) TCGA-BA-A6DA-01 1 247902152 247902152 C A OR14K1 Missense_Mutation p.S79Y 0.23 tolerated(0.08) benign(0.138) TCGA-BA-A6DA-01 1 248020654 248020654 T A TRIM58 Missense_Mutation p.C36S 0.17 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 1 248112881 248112881 G T OR2L8 Missense_Mutation p.S241I 0.28 deleterious(0) probably_damaging(0.983) TCGA-BA-A6DA-01 1 248263219 248263219 C A OR2L13 Missense_Mutation p.P181Q 0.17 deleterious(0) probably_damaging(0.991) TCGA-BA-A6DA-01 1 248436631 248436631 C A OR2T33 Silent p.L162L 0.10 TCGA-BA-A6DA-01 1 248436994 248436994 G A OR2T33 Silent p.S41S 0.20 TCGA-BA-A6DA-01 1 248512317 248512317 G T OR14C36 Missense_Mutation p.V81F 0.23 tolerated(0.08) benign(0.062) TCGA-BA-A6DA-01 1 248525185 248525185 G T OR2T4 Missense_Mutation p.M101I 0.14 tolerated(0.23) benign(0.045) TCGA-BA-A6DA-01 1 27661903 27661903 C T TMEM222 Silent p.F191F 0.15 TCGA-BA-A6DA-01 1 27686011 27686011 C A MAP3K6 Silent p.G774G 0.18 TCGA-BA-A6DA-01 1 28817491 28817491 A G PHACTR4 Silent p.E625E 0.27 TCGA-BA-A6DA-01 1 29519875 29519875 A G MECR 3'Flank 0.25 TCGA-BA-A6DA-01 1 29587162 29587162 T C PTPRU Silent p.A297A 0.31 TCGA-BA-A6DA-01 1 31811836 31811836 C T ZCCHC17 Silent p.S86S 0.19 TCGA-BA-A6DA-01 1 34076814 34076814 G A CSMD2 Missense_Mutation p.P2017L 0.18 tolerated(0.06) benign(0.05) TCGA-BA-A6DA-01 1 35334214 35334214 G T DLGAP3 Missense_Mutation p.P826H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 1 38161590 38161590 G T CDCA8 Nonsense_Mutation p.G78* 0.14 TCGA-BA-A6DA-01 1 41471751 41471751 G C CTPS1 Silent p.T427T 0.22 TCGA-BA-A6DA-01 1 44128596 44128596 G T KDM4A Missense_Mutation p.R154I 0.19 deleterious(0.04) benign(0.007) TCGA-BA-A6DA-01 1 46977890 46977890 G C DMBX1 Silent p.P286P 0.25 TCGA-BA-A6DA-01 1 47399865 47399865 A G CYP4A11 Silent p.D357D 0.18 TCGA-BA-A6DA-01 1 47685465 47685465 G T TAL1 Missense_Mutation p.P308H 0.22 tolerated(0.3) possibly_damaging(0.615) TCGA-BA-A6DA-01 1 52344242 52344242 T G NRD1 Missense_Mutation p.K16Q 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-BA-A6DA-01 1 57158157 57158157 G T PRKAA2 Missense_Mutation p.A153S 0.15 deleterious(0) possibly_damaging(0.774) TCGA-BA-A6DA-01 1 70504192 70504192 T A LRRC7 Silent p.A857A 0.25 TCGA-BA-A6DA-01 1 71418708 71418708 C A PTGER3 Missense_Mutation p.R380M 0.34 tolerated(0.07) benign(0.001) TCGA-BA-A6DA-01 1 71437416 71437416 T A PTGER3 Intron 0.27 TCGA-BA-A6DA-01 1 71542499 71542499 C T ZRANB2 Missense_Mutation p.A94T 0.16 tolerated(0.18) benign(0.345) TCGA-BA-A6DA-01 1 75038606 75038606 C A C1orf173 Nonsense_Mutation p.E930* 0.21 TCGA-BA-A6DA-01 1 76253192 76253192 A G RABGGTB Missense_Mutation p.Q5R 0.28 tolerated(0.57) benign(0) TCGA-BA-A6DA-01 1 7797432 7797432 C T CAMTA1 Missense_Mutation p.R1154W 0.21 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 1 78414934 78414934 T C FUBP1 Missense_Mutation p.Y611C 0.33 deleterious(0) unknown(0) TCGA-BA-A6DA-01 1 84946695 84946695 G A RPF1 Silent p.K95K 0.27 TCGA-BA-A6DA-01 1 86340371 86340371 A T COL24A1 Silent p.T1033T 0.37 TCGA-BA-A6DA-01 1 94458777 94458777 C A ABCA4 3'UTR 0.19 TCGA-BA-A6DA-01 20 16030573 16030573 T G MACROD2 3'UTR 0.13 TCGA-BA-A6DA-01 20 21687041 21687041 C A PAX1 Intron 0.18 TCGA-BA-A6DA-01 20 26084222 26084222 G T NCOR1P1 RNA 0.10 TCGA-BA-A6DA-01 20 3306916 3306916 C A C20orf194 Missense_Mutation p.Q372H 0.18 tolerated(0.06) probably_damaging(0.957) TCGA-BA-A6DA-01 20 40713419 40713419 G A PTPRT Missense_Mutation p.P1347S 0.09 deleterious(0) benign(0.341) TCGA-BA-A6DA-01 20 42635323 42635323 C T TOX2 Missense_Mutation p.P101L 0.30 tolerated(0.42) probably_damaging(0.997) TCGA-BA-A6DA-01 20 45021779 45021779 G A ELMO2 Missense_Mutation p.R66C 0.07 deleterious(0) probably_damaging(0.985) TCGA-BA-A6DA-01 20 46313262 46313262 G C SULF2 Silent p.P267P 0.24 TCGA-BA-A6DA-01 20 57766541 57766541 C A ZNF831 Missense_Mutation p.P156H 0.26 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 20 57766702 57766702 G A ZNF831 Missense_Mutation p.G210R 0.29 deleterious(0) probably_damaging(0.983) TCGA-BA-A6DA-01 20 57766807 57766807 C - ZNF831 Frame_Shift_Del p.L246Ffs*16 0.26 TCGA-BA-A6DA-01 20 57769579 57769579 A G ZNF831 Missense_Mutation p.S1169G 0.24 tolerated(1) benign(0) TCGA-BA-A6DA-01 20 57876487 57876488 - G EDN3 Frame_Shift_Ins p.D27Gfs*17 0.14 TCGA-BA-A6DA-01 20 62331728 62331728 G A ARFRP1 3'UTR 0.12 TCGA-BA-A6DA-01 20 896737 896737 C A ANGPT4 Missense_Mutation p.G41C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 21 31744289 31744289 G T KRTAP13-2 Nonsense_Mutation p.Y81* 0.30 TCGA-BA-A6DA-01 21 31797870 31797870 C A KRTAP13-3 Missense_Mutation p.G121C 0.32 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DA-01 21 37609640 37609640 G T DOPEY2 Silent p.R901R 0.11 TCGA-BA-A6DA-01 21 38081518 38081518 G A SIM2 Missense_Mutation p.V76I 0.22 tolerated(0.24) benign(0.001) TCGA-BA-A6DA-01 21 41559089 41559089 T A DSCAM Silent p.T916T 0.13 TCGA-BA-A6DA-01 22 17308430 17308430 A T HSFY1P1 RNA 0.18 TCGA-BA-A6DA-01 22 18022521 18022521 C A CECR2 Missense_Mutation p.P876T 0.31 deleterious(0.03) possibly_damaging(0.897) TCGA-BA-A6DA-01 22 23264942 23264942 A T IGLC7 Nonsense_Mutation p.K60* 0.19 TCGA-BA-A6DA-01 22 23404068 23404068 C A RTDR1 Missense_Mutation p.V237F 0.20 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 22 24943883 24943883 T C GUCD1 Missense_Mutation p.K96R 0.28 tolerated(0.57) benign(0.001) TCGA-BA-A6DA-01 22 26423551 26423551 T A MYO18B Silent p.G2537G 0.19 TCGA-BA-A6DA-01 22 29885768 29885768 G A NEFH Silent p.K713K 0.20 TCGA-BA-A6DA-01 22 31737633 31737633 C T PATZ1 Intron 0.24 TCGA-BA-A6DA-01 22 32352730 32352730 C T YWHAH Missense_Mutation p.T231I 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BA-A6DA-01 22 35947937 35947937 G T RASD2 Missense_Mutation p.R220L 0.26 tolerated(0.16) benign(0.079) TCGA-BA-A6DA-01 22 41565564 41565564 G T EP300 Missense_Mutation p.R1410S 0.27 probably_damaging(0.999) TCGA-BA-A6DA-01 22 42608932 42608932 G C TCF20 Missense_Mutation p.Q794E 0.22 probably_damaging(0.983) TCGA-BA-A6DA-01 22 42781104 42781104 T C NFAM1 3'UTR 0.20 TCGA-BA-A6DA-01 22 43035992 43035992 C G ATP5L2 Missense_Mutation p.G97R 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-BA-A6DA-01 22 45813702 45813702 G T RIBC2 Missense_Mutation p.Q139H 0.20 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 22 50750771 50750771 C A DENND6B Splice_Site p.X545_splice 0.25 TCGA-BA-A6DA-01 2 100623460 100623460 C A AFF3 Missense_Mutation p.R194S 0.22 deleterious(0.01) possibly_damaging(0.857) TCGA-BA-A6DA-01 2 101012074 101012074 C G CHST10 Missense_Mutation p.A144P 0.19 tolerated(0.17) benign(0.279) TCGA-BA-A6DA-01 2 105473259 105473259 C A POU3F3 Missense_Mutation p.P431T 0.29 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 2 108869876 108869876 C T SULT1C3 Missense_Mutation p.S126F 0.29 deleterious(0.02) possibly_damaging(0.754) TCGA-BA-A6DA-01 2 116599822 116599822 G C DPP10 Missense_Mutation p.K768N 0.14 tolerated(0.38) benign(0.034) TCGA-BA-A6DA-01 2 120204415 120204415 G C SCTR Missense_Mutation p.H354D 0.15 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 2 120204416 120204416 G T SCTR Silent p.I353I 0.16 TCGA-BA-A6DA-01 2 135848650 135848650 A G RAB3GAP1 Missense_Mutation p.Y78C 0.16 tolerated(0.06) benign(0.438) TCGA-BA-A6DA-01 2 140995762 140995762 C A LRP1B Nonsense_Mutation p.G4507* 0.28 TCGA-BA-A6DA-01 2 152728961 152728961 C A CACNB4 Missense_Mutation p.G190W 0.20 deleterious(0.01) possibly_damaging(0.867) TCGA-BA-A6DA-01 2 155711349 155711349 C A KCNJ3 Missense_Mutation p.Q344K 0.31 tolerated(0.25) probably_damaging(0.995) TCGA-BA-A6DA-01 2 158443803 158443803 G A ACVR1C Missense_Mutation p.P67L 0.26 tolerated(0.18) possibly_damaging(0.864) TCGA-BA-A6DA-01 2 163236421 163236421 C G KCNH7 Missense_Mutation p.D1025H 0.23 deleterious(0.03) possibly_damaging(0.791) TCGA-BA-A6DA-01 2 175246483 175246483 C A CIR1 Missense_Mutation p.V64L 0.22 tolerated(0.06) unknown(0) TCGA-BA-A6DA-01 2 177034365 177034365 A T HOXD3 Missense_Mutation p.N175Y 0.26 deleterious(0) benign(0.061) TCGA-BA-A6DA-01 2 178285020 178285020 G T AGPS Missense_Mutation p.G95V 0.24 deleterious(0) probably_damaging(0.996) TCGA-BA-A6DA-01 2 179431010 179431010 T C TTN Missense_Mutation p.K26617E 0.24 TCGA-BA-A6DA-01 2 179436938 179436938 C T TTN Missense_Mutation p.E24641K 0.24 TCGA-BA-A6DA-01 2 179442524 179442524 T A TTN Missense_Mutation p.I22877L 0.23 TCGA-BA-A6DA-01 2 179442852 179442852 G C TTN Missense_Mutation p.P22797R 0.15 TCGA-BA-A6DA-01 2 179504494 179504494 G T TTN Missense_Mutation p.P13603H 0.19 TCGA-BA-A6DA-01 2 179592942 179592942 A T TTN Missense_Mutation p.S6537T 0.16 TCGA-BA-A6DA-01 2 179615215 179615215 G A TTN Intron 0.27 TCGA-BA-A6DA-01 2 179615721 179615721 G C TTN Intron 0.25 TCGA-BA-A6DA-01 2 179622620 179622620 T A TTN Missense_Mutation p.T3443S 0.17 TCGA-BA-A6DA-01 2 179632518 179632518 C A TTN Missense_Mutation p.V3147F 0.17 TCGA-BA-A6DA-01 2 179655564 179655564 C T TTN Silent p.Q557Q 0.14 TCGA-BA-A6DA-01 2 179733867 179733867 G - CCDC141 Frame_Shift_Del p.Q791Sfs*21 0.15 TCGA-BA-A6DA-01 2 180008416 180008416 A T SESTD1 Nonsense_Mutation p.L251* 0.19 TCGA-BA-A6DA-01 2 190554269 190554269 A G ANKAR Silent p.T206T 0.17 TCGA-BA-A6DA-01 2 192250719 192250719 A G MYO1B Missense_Mutation p.H488R 0.21 deleterious(0.04) possibly_damaging(0.811) TCGA-BA-A6DA-01 2 196737029 196737029 G C DNAH7 Nonsense_Mutation p.S2193* 0.21 TCGA-BA-A6DA-01 2 198571976 198571976 A T MARS2 3'UTR 0.18 TCGA-BA-A6DA-01 2 204305156 204305156 G T RAPH1 Silent p.P919P 0.26 TCGA-BA-A6DA-01 2 209307155 209307155 G A PTH2R Missense_Mutation p.A160T 0.09 tolerated(0.65) benign(0.159) TCGA-BA-A6DA-01 2 209358198 209358198 C A PTH2R Missense_Mutation p.H489Q 0.30 deleterious(0) possibly_damaging(0.494) TCGA-BA-A6DA-01 2 21233537 21233537 G T APOB Missense_Mutation p.S2068Y 0.23 benign(0.084) TCGA-BA-A6DA-01 2 216269248 216269248 G C FN1 Silent p.P1039P 0.30 TCGA-BA-A6DA-01 2 219892418 219892418 G A CCDC108 Missense_Mutation p.P722L 0.21 tolerated(1) benign(0.06) TCGA-BA-A6DA-01 2 228881280 228881280 C G SPHKAP Missense_Mutation p.Q1430H 0.27 tolerated(0.45) benign(0.071) TCGA-BA-A6DA-01 2 228881665 228881665 G T SPHKAP Missense_Mutation p.T1302N 0.24 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 2 238642432 238642432 A G LRRFIP1 Intron 0.18 TCGA-BA-A6DA-01 2 241810830 241810830 T A AGXT Missense_Mutation p.L163Q 0.25 deleterious(0.05) benign(0.427) TCGA-BA-A6DA-01 2 242814994 242814994 C A CXXC11 Silent p.V429V 0.19 TCGA-BA-A6DA-01 2 24484450 24484450 A T ITSN2 Silent p.S839S 0.22 TCGA-BA-A6DA-01 2 264914 264914 G C ACP1 5'UTR 0.33 TCGA-BA-A6DA-01 2 27360866 27360866 G C C2orf53 Missense_Mutation p.S111C 0.33 deleterious(0) possibly_damaging(0.799) TCGA-BA-A6DA-01 2 27800270 27800270 G A C2orf16 Missense_Mutation p.M277I 0.16 tolerated(0.38) benign(0.095) TCGA-BA-A6DA-01 2 32474837 32474837 C A NLRC4 Missense_Mutation p.G699V 0.25 deleterious(0) possibly_damaging(0.878) TCGA-BA-A6DA-01 2 32832521 32832521 G T BIRC6 Splice_Site p.X4691_splice 0.14 TCGA-BA-A6DA-01 2 44586752 44586752 C A PREPL Missense_Mutation p.D35Y 0.19 deleterious_low_confidence(0.04) benign(0.044) TCGA-BA-A6DA-01 2 46574115 46574115 C T EPAS1 Missense_Mutation p.P44S 0.21 deleterious(0.01) possibly_damaging(0.725) TCGA-BA-A6DA-01 2 49190545 49190545 G C FSHR Missense_Mutation p.T472R 0.20 deleterious(0) probably_damaging(0.917) TCGA-BA-A6DA-01 2 61411929 61411929 C A AHSA2 Silent p.T23T 0.19 TCGA-BA-A6DA-01 2 61577807 61577807 T C USP34 Missense_Mutation p.I425V 0.13 tolerated(0.85) possibly_damaging(0.558) TCGA-BA-A6DA-01 2 71185208 71185208 C A ATP6V1B1 Silent p.T69T 0.16 TCGA-BA-A6DA-01 2 71801373 71801373 C G DYSF Missense_Mutation p.L1092V 0.21 tolerated(0.06) possibly_damaging(0.55) TCGA-BA-A6DA-01 2 73716882 73716882 G T ALMS1 Missense_Mutation p.R2598I 0.24 benign(0.002) TCGA-BA-A6DA-01 2 73717083 73717083 A T ALMS1 Missense_Mutation p.K2665I 0.20 probably_damaging(0.918) TCGA-BA-A6DA-01 2 74649491 74649491 C G WDR54 Missense_Mutation p.L71V 0.23 tolerated(0.09) benign(0.059) TCGA-BA-A6DA-01 2 74686659 74686659 A G WBP1 Intron 0.21 TCGA-BA-A6DA-01 2 79365096 79365096 G T REG1P RNA 0.35 TCGA-BA-A6DA-01 2 84652636 84652636 C A SUCLG1 Missense_Mutation p.G306V 0.22 deleterious(0) probably_damaging(0.95) TCGA-BA-A6DA-01 2 88327946 88327946 T C KRCC1 Missense_Mutation p.Y46C 0.35 deleterious(0) probably_damaging(0.955) TCGA-BA-A6DA-01 2 88828736 88828736 G T TEX37 Missense_Mutation p.R96M 0.14 tolerated_low_confidence(0.18) benign(0) TCGA-BA-A6DA-01 2 89185615 89185615 C A IGKV4-1 Missense_Mutation p.S103R 0.23 tolerated(0.7) possibly_damaging(0.705) TCGA-BA-A6DA-01 2 98986450 98986450 C A CNGA3 Silent p.I4I 0.24 TCGA-BA-A6DA-01 3 100949889 100949889 G A IMPG2 Missense_Mutation p.L1112F 0.24 tolerated(1) benign(0.008) TCGA-BA-A6DA-01 3 101383838 101383838 C - ZBTB11 Frame_Shift_Del p.A533Pfs*14 0.11 TCGA-BA-A6DA-01 3 107491516 107491516 G T BBX Missense_Mutation p.K316N 0.21 tolerated(0.39) benign(0.014) TCGA-BA-A6DA-01 3 109023458 109023458 G C DPPA2 Missense_Mutation p.R240G 0.23 deleterious(0.01) benign(0.031) TCGA-BA-A6DA-01 3 109050771 109050771 G T DPPA4 Silent p.R96R 0.21 TCGA-BA-A6DA-01 3 112357536 112357536 C A CCDC80 Missense_Mutation p.R406M 0.24 deleterious(0.02) possibly_damaging(0.73) TCGA-BA-A6DA-01 3 118865682 118865682 A T C3orf30 Nonsense_Mutation p.K216* 0.22 TCGA-BA-A6DA-01 3 120941922 120941922 G T STXBP5L Missense_Mutation p.M343I 0.23 tolerated(0.15) possibly_damaging(0.507) TCGA-BA-A6DA-01 3 121340390 121340390 C - FBXO40 Frame_Shift_Del p.H39Tfs*22 0.15 TCGA-BA-A6DA-01 3 122145935 122145935 C T KPNA1 Missense_Mutation p.G505E 0.15 tolerated(0.11) possibly_damaging(0.875) TCGA-BA-A6DA-01 3 124181457 124181457 A T KALRN Missense_Mutation p.Q1334H 0.10 tolerated(0.07) benign(0.101) TCGA-BA-A6DA-01 3 126751560 126751560 A G PLXNA1 Missense_Mutation p.I1826V 0.15 deleterious(0.01) benign(0.022) TCGA-BA-A6DA-01 3 12966186 12966186 G A IQSEC1 Missense_Mutation p.P556L 0.24 deleterious(0) probably_damaging(0.968) TCGA-BA-A6DA-01 3 129824423 129824423 C G FAM86HP RNA 0.35 TCGA-BA-A6DA-01 3 133109139 133109139 G A TMEM108 Silent p.V522V 0.03 TCGA-BA-A6DA-01 3 133368380 133368380 C T TOPBP1 Missense_Mutation p.E451K 0.33 tolerated(0.11) benign(0.11) TCGA-BA-A6DA-01 3 140406653 140406653 A G TRIM42 Missense_Mutation p.R377G 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BA-A6DA-01 3 140682132 140682132 T C SLC25A36 Intron 0.19 TCGA-BA-A6DA-01 3 142142437 142142437 T A XRN1 Missense_Mutation p.R225S 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 3 148459682 148459682 C A AGTR1 Missense_Mutation p.T287N 0.06 tolerated(0.06) probably_damaging(1) TCGA-BA-A6DA-01 3 148714191 148714191 C A GYG1 Silent p.V82V 0.22 TCGA-BA-A6DA-01 3 151046592 151046593 - T P2RY13 Frame_Shift_Ins p.N84Kfs*20 0.32 TCGA-BA-A6DA-01 3 151165357 151165357 C A IGSF10 Missense_Mutation p.E804D 0.17 deleterious(0.03) possibly_damaging(0.849) TCGA-BA-A6DA-01 3 154055683 154055683 C T GPR149 Silent p.G667G 0.40 TCGA-BA-A6DA-01 3 155198905 155198905 C - PLCH1 Frame_Shift_Del p.G1645Vfs*47 0.17 TCGA-BA-A6DA-01 3 155208590 155208590 C G PLCH1 Missense_Mutation p.R780P 0.37 deleterious(0) probably_damaging(0.994) TCGA-BA-A6DA-01 3 169814956 169814956 T C PHC3 3'UTR 0.18 TCGA-BA-A6DA-01 3 170856013 170856013 C G TNIK Missense_Mutation p.M525I 0.11 tolerated(0.44) benign(0.004) TCGA-BA-A6DA-01 3 179605464 179605464 C A PEX5L Missense_Mutation p.A103S 0.35 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-BA-A6DA-01 3 183885461 183885461 G T DVL3 Missense_Mutation p.R431L 0.11 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 3 184100487 184100487 C A CHRD Missense_Mutation p.L303I 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-BA-A6DA-01 3 186274336 186274336 C A TBCCD1 Missense_Mutation p.D241Y 0.24 deleterious(0.01) benign(0.013) TCGA-BA-A6DA-01 3 33194832 33194832 A C SUSD5 Missense_Mutation p.M431R 0.30 deleterious(0.03) benign(0.082) TCGA-BA-A6DA-01 3 38350472 38350472 G A SLC22A14 Missense_Mutation p.R268Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DA-01 3 38793729 38793729 G C SCN10A Missense_Mutation p.P579R 0.13 deleterious(0.04) possibly_damaging(0.526) TCGA-BA-A6DA-01 3 39543585 39543585 G A MOBP Missense_Mutation p.G9S 0.26 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BA-A6DA-01 3 47476525 47476525 T A SCAP Missense_Mutation p.Q75H 0.36 tolerated(0.64) benign(0) TCGA-BA-A6DA-01 3 50404858 50404858 G A CACNA2D2 Missense_Mutation p.H797Y 0.28 tolerated(0.12) benign(0.251) TCGA-BA-A6DA-01 3 97251359 97251359 C G EPHA6 Missense_Mutation p.I786M 0.24 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DA-01 4 104640371 104640371 G C TACR3 Silent p.G154G 0.33 TCGA-BA-A6DA-01 4 108954331 108954331 G A HADH Splice_Site p.X254_splice 0.18 TCGA-BA-A6DA-01 4 114120235 114120235 G T ANK2 Missense_Mutation p.K118N 0.26 benign(0.23) TCGA-BA-A6DA-01 4 118005504 118005504 C A TRAM1L1 Missense_Mutation p.G349V 0.15 deleterious(0.02) unknown(0) TCGA-BA-A6DA-01 4 120987824 120987824 C A MAD2L1 Missense_Mutation p.E22D 0.27 tolerated(0.07) benign(0.079) TCGA-BA-A6DA-01 4 121958603 121958603 C T NDNF Missense_Mutation p.E175K 0.25 deleterious(0.02) benign(0.446) TCGA-BA-A6DA-01 4 122075751 122075751 G C TNIP3 Missense_Mutation p.N226K 0.14 tolerated(0.08) benign(0.402) TCGA-BA-A6DA-01 4 123663245 123663245 G T BBS12 Silent p.V66V 0.21 TCGA-BA-A6DA-01 4 126241236 126241236 G T FAT4 Missense_Mutation p.A1224S 0.31 benign(0.021) TCGA-BA-A6DA-01 4 126372739 126372739 C T FAT4 Missense_Mutation p.P3523L 0.23 benign(0.314) TCGA-BA-A6DA-01 4 128949870 128949870 A T C4orf29 Nonsense_Mutation p.K314* 0.22 TCGA-BA-A6DA-01 4 13338422 13338422 C A HSP90AB2P RNA 0.31 TCGA-BA-A6DA-01 4 143081512 143081512 C T INPP4B Nonsense_Mutation p.W521* 0.17 TCGA-BA-A6DA-01 4 145580839 145580839 G T HHIP Missense_Mutation p.R227L 0.16 deleterious(0) possibly_damaging(0.711) TCGA-BA-A6DA-01 4 145581005 145581005 T A HHIP Intron 0.27 TCGA-BA-A6DA-01 4 156297059 156297059 G T MAP9 5'UTR 0.19 TCGA-BA-A6DA-01 4 166385593 166385593 G T CPE Missense_Mutation p.G120V 0.14 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 4 166981314 166981314 G T TLL1 Nonsense_Mutation p.E661* 0.24 TCGA-BA-A6DA-01 4 177056261 177056261 A T WDR17 Silent p.G391G 0.18 TCGA-BA-A6DA-01 4 177094477 177094477 A T WDR17 Missense_Mutation p.S1141C 0.48 deleterious(0.01) possibly_damaging(0.779) TCGA-BA-A6DA-01 4 178897046 178897046 G C LINC01098 Missense_Mutation p.Q83H 0.24 deleterious_low_confidence(0) benign(0.398) TCGA-BA-A6DA-01 4 185329416 185329416 T A IRF2 Missense_Mutation p.E142V 0.19 deleterious(0.03) possibly_damaging(0.522) TCGA-BA-A6DA-01 4 26417154 26417155 - G RBPJ Frame_Shift_Ins p.E85Gfs*10 0.17 TCGA-BA-A6DA-01 4 3768876 3768876 C T ADRA2C Silent p.V181V 0.23 TCGA-BA-A6DA-01 4 3952919 3952919 G A FAM86EP Intron 0.16 TCGA-BA-A6DA-01 4 4269542 4269542 C A LYAR 3'UTR 0.38 TCGA-BA-A6DA-01 4 43022374 43022374 G T GRXCR1 Missense_Mutation p.A211S 0.29 deleterious(0.04) benign(0.114) TCGA-BA-A6DA-01 4 4322518 4322518 G C ZBTB49 Missense_Mutation p.E591D 0.31 tolerated(0.39) benign(0.001) TCGA-BA-A6DA-01 4 44638069 44638069 G T YIPF7 Silent p.S74S 0.14 TCGA-BA-A6DA-01 4 46388145 46388145 T C GABRA2 Missense_Mutation p.I45V 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A6DA-01 4 57883369 57883369 G C POLR2B Missense_Mutation p.V706L 0.23 deleterious(0) possibly_damaging(0.512) TCGA-BA-A6DA-01 4 66509102 66509102 C T EPHA5 Nonsense_Mutation p.W75* 0.11 TCGA-BA-A6DA-01 4 6711357 6711357 C A MRFAP1L1 5'UTR 0.20 TCGA-BA-A6DA-01 4 70355209 70355209 G T UGT2B4 Nonsense_Mutation p.S317* 0.17 TCGA-BA-A6DA-01 4 70898910 70898910 T C HTN3 Silent p.Y43Y 0.32 TCGA-BA-A6DA-01 4 72363367 72363367 G T SLC4A4 Missense_Mutation p.M708I 0.20 tolerated(0.32) benign(0.036) TCGA-BA-A6DA-01 4 73164122 73164122 G T ADAMTS3 Missense_Mutation p.T821K 0.13 deleterious(0) benign(0.351) TCGA-BA-A6DA-01 4 83347216 83347216 T C HNRNPDL Missense_Mutation p.Y420C 0.16 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-BA-A6DA-01 4 94031951 94031951 T C GRID2 Silent p.D194D 0.17 TCGA-BA-A6DA-01 4 946235 946235 G C TMEM175 Silent p.V153V 0.14 TCGA-BA-A6DA-01 5 112178924 112178924 G T APC Nonsense_Mutation p.G2545* 0.23 TCGA-BA-A6DA-01 5 113798753 113798753 G T KCNN2 Missense_Mutation p.D337Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-BA-A6DA-01 5 121187881 121187881 G T FTMT Missense_Mutation p.D75Y 0.20 deleterious(0.02) benign(0.111) TCGA-BA-A6DA-01 5 122930768 122930768 G A CSNK1G3 Silent p.Q374Q 0.19 TCGA-BA-A6DA-01 5 1253803 1253803 G T TERT 3'UTR 0.44 TCGA-BA-A6DA-01 5 132535254 132535254 C T FSTL4 Missense_Mutation p.V688I 0.35 tolerated(0.46) benign(0.02) TCGA-BA-A6DA-01 5 13752341 13752341 C A DNAH5 Nonsense_Mutation p.G3644* 0.12 TCGA-BA-A6DA-01 5 13794111 13794111 C T DNAH5 Silent p.A2648A 0.19 TCGA-BA-A6DA-01 5 138657702 138657702 A T MATR3 Missense_Mutation p.K573I 0.28 deleterious(0) probably_damaging(0.991) TCGA-BA-A6DA-01 5 139741732 139741732 C G SLC4A9 Missense_Mutation p.S255C 0.21 deleterious(0.01) possibly_damaging(0.778) TCGA-BA-A6DA-01 5 140347537 140347537 C A PCDHAC2 Missense_Mutation p.P396T 0.18 tolerated(0.25) benign(0.01) TCGA-BA-A6DA-01 5 140432032 140432032 G T PCDHB1 Missense_Mutation p.G326V 0.17 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 5 140481135 140481135 T A PCDHB3 Missense_Mutation p.M301K 0.10 deleterious_low_confidence(0) benign(0.063) TCGA-BA-A6DA-01 5 140503477 140503477 G T PCDHB4 Missense_Mutation p.D633Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.845) TCGA-BA-A6DA-01 5 140503803 140503803 C T PCDHB4 Silent p.T741T 0.28 TCGA-BA-A6DA-01 5 140572311 140572311 G T PCDHB10 Missense_Mutation p.R62S 0.23 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-BA-A6DA-01 5 140579947 140579947 G C PCDHB11 Silent p.L200L 0.12 TCGA-BA-A6DA-01 5 140595647 140595647 C T PCDHB13 Missense_Mutation p.P651L 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.519) TCGA-BA-A6DA-01 5 140615873 140615873 G T PCDHB18 RNA 0.17 TCGA-BA-A6DA-01 5 140751387 140751387 G T PCDHGB3 Missense_Mutation p.A476S 0.24 deleterious(0.01) probably_damaging(1) TCGA-BA-A6DA-01 5 140768979 140768979 G A PCDHGB4 Missense_Mutation p.G510R 0.12 deleterious(0) probably_damaging(0.99) TCGA-BA-A6DA-01 5 140802640 140802640 G C PCDHGA11 Missense_Mutation p.G616R 0.29 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-BA-A6DA-01 5 145883507 145883507 G C TCERG1 Missense_Mutation p.E890Q 0.32 deleterious(0) unknown(0) TCGA-BA-A6DA-01 5 146017861 146017861 C A PPP2R2B Missense_Mutation p.R251L 0.10 deleterious(0) possibly_damaging(0.636) TCGA-BA-A6DA-01 5 14758587 14758587 A T ANKH Splice_Site p.X144_splice 0.06 TCGA-BA-A6DA-01 5 153085450 153085450 G T GRIA1 Missense_Mutation p.G559V 0.18 deleterious(0) probably_damaging(0.972) TCGA-BA-A6DA-01 5 153855371 153855371 G T HAND1 Missense_Mutation p.Q215K 0.11 deleterious(0) possibly_damaging(0.474) TCGA-BA-A6DA-01 5 154179521 154179521 G T LARP1 Silent p.L468L 0.11 TCGA-BA-A6DA-01 5 160044982 160044982 T G ATP10B Splice_Site p.X806_splice 0.11 TCGA-BA-A6DA-01 5 160721245 160721245 G C GABRB2 Missense_Mutation p.A461G 0.11 tolerated(0.32) benign(0.009) TCGA-BA-A6DA-01 5 161117215 161117215 G T GABRA6 Missense_Mutation p.V228F 0.13 deleterious(0) possibly_damaging(0.878) TCGA-BA-A6DA-01 5 167882461 167882461 G T WWC1 Missense_Mutation p.R920L 0.26 deleterious(0) probably_damaging(0.955) TCGA-BA-A6DA-01 5 170222388 170222388 C A GABRP Silent p.L139L 0.17 TCGA-BA-A6DA-01 5 176022692 176022692 T C CDHR2 3'UTR 0.16 TCGA-BA-A6DA-01 5 178391743 178391743 G T ZNF454 Missense_Mutation p.R113I 0.24 tolerated(0.24) benign(0.259) TCGA-BA-A6DA-01 5 21755700 21755700 C T CDH12 Missense_Mutation p.A629T 0.13 deleterious(0.02) benign(0.013) TCGA-BA-A6DA-01 5 32789405 32789405 G T NPR3 3'UTR 0.11 TCGA-BA-A6DA-01 5 33576271 33576271 T A ADAMTS12 Missense_Mutation p.E1287V 0.18 tolerated(0.07) benign(0.107) TCGA-BA-A6DA-01 5 33577057 33577057 G T ADAMTS12 Missense_Mutation p.P1025H 0.35 deleterious(0.01) possibly_damaging(0.503) TCGA-BA-A6DA-01 5 33881451 33881451 C A ADAMTS12 Nonsense_Mutation p.E88* 0.38 TCGA-BA-A6DA-01 5 35037089 35037089 T C AGXT2 Silent p.E148E 0.16 TCGA-BA-A6DA-01 5 35876532 35876532 G A IL7R Missense_Mutation p.G442R 0.12 tolerated(0.63) benign(0.02) TCGA-BA-A6DA-01 5 37834853 37834853 T A GDNF Missense_Mutation p.T33S 0.40 tolerated(0.93) benign(0.059) TCGA-BA-A6DA-01 5 40909683 40909683 C T C7 5'UTR 0.20 TCGA-BA-A6DA-01 5 41018519 41018519 C A MROH2B Missense_Mutation p.W896L 0.12 deleterious(0) possibly_damaging(0.577) TCGA-BA-A6DA-01 5 41313828 41313828 C G PLCXD3 Missense_Mutation p.G286A 0.14 deleterious(0.01) probably_damaging(0.976) TCGA-BA-A6DA-01 5 41382320 41382320 C T PLCXD3 Silent p.V140V 0.34 TCGA-BA-A6DA-01 5 42719312 42719312 C A GHR Missense_Mutation p.T568N 0.29 tolerated(0.09) probably_damaging(1) TCGA-BA-A6DA-01 5 45695847 45695847 G C HCN1 Missense_Mutation p.Q117E 0.27 tolerated(0.2) possibly_damaging(0.848) TCGA-BA-A6DA-01 5 52344594 52344594 G A ITGA2 Silent p.K208K 0.07 TCGA-BA-A6DA-01 5 53751987 53751987 G T HSPB3 Missense_Mutation p.G123V 0.19 deleterious(0) possibly_damaging(0.639) TCGA-BA-A6DA-01 5 63256868 63256868 G C HTR1A Missense_Mutation p.R227G 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-BA-A6DA-01 5 63871635 63871635 C A RGS7BP Silent p.R123R 0.24 TCGA-BA-A6DA-01 5 68709914 68709914 G T RAD17 Missense_Mutation p.G614V 0.27 deleterious(0.01) benign(0.181) TCGA-BA-A6DA-01 5 76703236 76703236 C A PDE8B Missense_Mutation p.S440Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DA-01 5 78322355 78322355 C A DMGDH Silent p.L694L 0.26 TCGA-BA-A6DA-01 5 78426858 78426858 C A BHMT Silent p.A380A 0.20 TCGA-BA-A6DA-01 5 79029056 79029056 A G CMYA5 Missense_Mutation p.R1490G 0.15 benign(0.099) TCGA-BA-A6DA-01 5 82648965 82648965 A C XRCC4 Silent p.L305L 0.14 TCGA-BA-A6DA-01 5 82948337 82948337 C A HAPLN1 Missense_Mutation p.R136I 0.12 deleterious(0) benign(0.019) TCGA-BA-A6DA-01 5 88057117 88057117 C A MEF2C Missense_Mutation p.C96F 0.18 deleterious(0) unknown(0) TCGA-BA-A6DA-01 5 89989858 89989858 G A GPR98 Missense_Mutation p.V2429I 0.29 benign(0.417) TCGA-BA-A6DA-01 5 96228050 96228050 G A ERAP2 Missense_Mutation p.G340S 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 5 98129142 98129142 G C RGMB Silent p.L374L 0.32 TCGA-BA-A6DA-01 6 101075745 101075745 G C ASCC3 Missense_Mutation p.D1498E 0.24 deleterious(0) probably_damaging(0.923) TCGA-BA-A6DA-01 6 108492688 108492688 G T NR2E1 Missense_Mutation p.V18L 0.19 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 6 109321818 109321818 T A SESN1 Missense_Mutation p.H202L 0.29 tolerated(0.65) benign(0.158) TCGA-BA-A6DA-01 6 114264637 114264637 T A HDAC2 Missense_Mutation p.E419V 0.19 tolerated(0.17) possibly_damaging(0.772) TCGA-BA-A6DA-01 6 118845052 118845052 G A CEP85L Missense_Mutation p.S354L 0.16 tolerated(0.06) benign(0.013) TCGA-BA-A6DA-01 6 126080456 126080456 C T HEY2 Silent p.A174A 0.23 TCGA-BA-A6DA-01 6 130762867 130762867 G T TMEM200A Nonsense_Mutation p.E434* 0.19 TCGA-BA-A6DA-01 6 132860136 132860136 C G TAAR9 Missense_Mutation p.S236R 0.26 tolerated(0.18) benign(0.232) TCGA-BA-A6DA-01 6 132910545 132910545 C A TAAR5 Missense_Mutation p.R94L 0.30 deleterious(0.02) benign(0.042) TCGA-BA-A6DA-01 6 138584503 138584503 C G KIAA1244 Nonsense_Mutation p.S628* 0.26 TCGA-BA-A6DA-01 6 145093085 145093085 C A UTRN Silent p.T2846T 0.17 TCGA-BA-A6DA-01 6 151089835 151089835 C - PLEKHG1 Frame_Shift_Del p.L159Ffs*29 0.10 TCGA-BA-A6DA-01 6 152639309 152639309 C A SYNE1 Silent p.L5493L 0.26 TCGA-BA-A6DA-01 6 152768656 152768656 C A SYNE1 Missense_Mutation p.K1202N 0.29 benign(0.028) TCGA-BA-A6DA-01 6 152823790 152823790 C A SYNE1 Missense_Mutation p.S289I 0.17 benign(0.005) TCGA-BA-A6DA-01 6 155774613 155774613 C T NOX3 Missense_Mutation p.G89R 0.22 tolerated(0.95) probably_damaging(0.987) TCGA-BA-A6DA-01 6 159187881 159187885 CAAGC AGA EZR 3'UTR 0.08 TCGA-BA-A6DA-01 6 160174647 160174647 G C WTAP Splice_Site p.X203_splice 0.23 TCGA-BA-A6DA-01 6 168226472 168226472 G T MLLT4 5'Flank 0.20 TCGA-BA-A6DA-01 6 170162575 170162575 G A ERMARD Missense_Mutation p.R303K 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-BA-A6DA-01 6 18264160 18264160 T A DEK Missense_Mutation p.E20V 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.527) TCGA-BA-A6DA-01 6 26056503 26056503 T C HIST1H1C Missense_Mutation p.K52E 0.28 deleterious(0.04) probably_damaging(0.909) TCGA-BA-A6DA-01 6 27420077 27420077 T G ZNF184 Missense_Mutation p.N421H 0.32 deleterious(0.03) probably_damaging(0.941) TCGA-BA-A6DA-01 6 27925229 27925229 C A OR2B6 Missense_Mutation p.L71I 0.19 tolerated(0.07) benign(0.126) TCGA-BA-A6DA-01 6 29323353 29323353 C T OR5V1 Missense_Mutation p.G207D 0.24 tolerated(0.48) probably_damaging(0.995) TCGA-BA-A6DA-01 6 29395018 29395018 G A OR11A1 Missense_Mutation p.P134L 0.23 tolerated(0.09) benign(0.015) TCGA-BA-A6DA-01 6 29407903 29407903 C G OR10C1 Silent p.T37T 0.18 TCGA-BA-A6DA-01 6 29408263 29408263 C - OR10C1 Frame_Shift_Del p.H158Tfs*87 0.16 TCGA-BA-A6DA-01 6 31497642 31497642 T C MCCD1 Missense_Mutation p.L97P 0.39 deleterious(0) probably_damaging(0.984) TCGA-BA-A6DA-01 6 31630102 31630102 C T GPANK1 Missense_Mutation p.E338K 0.21 deleterious(0.02) benign(0.005) TCGA-BA-A6DA-01 6 32029422 32029422 C A TNXB Missense_Mutation p.G2415V 0.19 probably_damaging(0.998) TCGA-BA-A6DA-01 6 33281481 33281481 G A TAPBP Silent p.L66L 0.28 TCGA-BA-A6DA-01 6 33374378 33374378 G T KIFC1 Missense_Mutation p.V613L 0.18 deleterious(0.01) benign(0.396) TCGA-BA-A6DA-01 6 348268 348268 C G DUSP22 Silent p.V143V 0.10 TCGA-BA-A6DA-01 6 35210479 35210479 G T SCUBE3 Missense_Mutation p.A539S 0.25 tolerated(0.22) benign(0.024) TCGA-BA-A6DA-01 6 35837403 35837403 C G SRPK1 Missense_Mutation p.D423H 0.26 deleterious(0.03) benign(0.002) TCGA-BA-A6DA-01 6 38881726 38881726 G A DNAH8 Missense_Mutation p.E3104K 0.20 benign(0.002) TCGA-BA-A6DA-01 6 39841077 39841077 A C DAAM2 Missense_Mutation p.T370P 0.29 deleterious(0) probably_damaging(0.986) TCGA-BA-A6DA-01 6 41001649 41001649 A C UNC5CL Missense_Mutation p.D219E 0.25 tolerated(0.1) possibly_damaging(0.765) TCGA-BA-A6DA-01 6 41162343 41162343 G T TREML2 Missense_Mutation p.P202H 0.28 deleterious(0.05) possibly_damaging(0.906) TCGA-BA-A6DA-01 6 41162351 41162351 G T TREML2 Missense_Mutation p.S199R 0.24 tolerated(0.32) benign(0.002) TCGA-BA-A6DA-01 6 5004205 5004205 G A RPP40 Missense_Mutation p.P11L 0.28 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 6 51890828 51890828 C G PKHD1 Silent p.A1260A 0.17 TCGA-BA-A6DA-01 6 70048838 70048838 G C BAI3 Silent p.T1073T 0.25 TCGA-BA-A6DA-01 6 71571434 71571434 G T B3GAT2 Silent p.R302R 0.19 TCGA-BA-A6DA-01 6 76551080 76551080 A T MYO6 Silent p.S267S 0.12 TCGA-BA-A6DA-01 6 76657113 76657113 G T IMPG1 Missense_Mutation p.H654Q 0.30 tolerated(0.34) benign(0.021) TCGA-BA-A6DA-01 6 87797907 87797907 G A CGA Silent p.Y4Y 0.20 TCGA-BA-A6DA-01 6 87964977 87964978 TG - ZNF292 Frame_Shift_Del p.L546Vfs*2 0.11 TCGA-BA-A6DA-01 6 91226340 91226340 C G MAP3K7 Silent p.L567L 0.26 TCGA-BA-A6DA-01 6 96034606 96034606 A G MANEA Silent p.P97P 0.15 TCGA-BA-A6DA-01 7 100276124 100276124 A T GNB2 Missense_Mutation p.N268I 0.25 deleterious(0.01) possibly_damaging(0.583) TCGA-BA-A6DA-01 7 100372947 100372947 C A ZAN Intron 0.16 TCGA-BA-A6DA-01 7 100552726 100552726 C A MUC3A Missense_Mutation p.R493S 0.16 tolerated(0.73) benign(0.023) TCGA-BA-A6DA-01 7 103008201 103008201 T A PSMC2 Missense_Mutation p.S363R 0.22 deleterious(0.04) benign(0.33) TCGA-BA-A6DA-01 7 106508992 106508992 G T PIK3CG Missense_Mutation p.C329F 0.20 tolerated(0.86) benign(0.003) TCGA-BA-A6DA-01 7 107688452 107688452 G T LAMB4 Missense_Mutation p.H1409Q 0.26 tolerated(0.33) benign(0.001) TCGA-BA-A6DA-01 7 11068350 11068350 G T PHF14 Missense_Mutation p.V454F 0.31 deleterious(0) probably_damaging(0.952) TCGA-BA-A6DA-01 7 121942248 121942248 T G FEZF1 Silent p.R411R 0.23 TCGA-BA-A6DA-01 7 121944099 121944099 C G FEZF1 Silent p.L131L 0.27 TCGA-BA-A6DA-01 7 126173228 126173228 G T GRM8 Silent p.A736A 0.23 TCGA-BA-A6DA-01 7 127013508 127013508 C T ZNF800 Missense_Mutation p.A628T 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-BA-A6DA-01 7 131853236 131853236 C A PLXNA4 Silent p.T1371T 0.26 TCGA-BA-A6DA-01 7 137271855 137271855 G T DGKI Silent p.L471L 0.17 TCGA-BA-A6DA-01 7 138764702 138764702 T G ZC3HAV1 Silent p.R329R 0.24 TCGA-BA-A6DA-01 7 142111430 142111430 T A TRBV5-7 Silent p.L102L 0.17 TCGA-BA-A6DA-01 7 1478575 1478575 C T MICALL2 Missense_Mutation p.V675I 0.27 tolerated(0.15) benign(0.107) TCGA-BA-A6DA-01 7 149576766 149576766 A T ATP6V0E2 Nonstop_Mutation p.*214Cext*52 0.25 TCGA-BA-A6DA-01 7 150164341 150164341 C T GIMAP8 Silent p.L185L 0.18 TCGA-BA-A6DA-01 7 1526596 1526596 C G INTS1 Missense_Mutation p.E930Q 0.18 deleterious(0.04) benign(0.262) TCGA-BA-A6DA-01 7 15425169 15425169 G T AGMO Missense_Mutation p.P326T 0.31 deleterious(0.02) benign(0.017) TCGA-BA-A6DA-01 7 154863245 154863245 G T HTR5A Silent p.P212P 0.17 TCGA-BA-A6DA-01 7 155503974 155503974 G A RBM33 Silent p.Q342Q 0.28 TCGA-BA-A6DA-01 7 156762411 156762411 G T NOM1 3'UTR 0.27 TCGA-BA-A6DA-01 7 19184456 19184456 C T FERD3L 3'UTR 0.22 TCGA-BA-A6DA-01 7 21631181 21631181 C A DNAH11 Missense_Mutation p.H885N 0.17 probably_damaging(0.913) TCGA-BA-A6DA-01 7 2581387 2581387 G A BRAT1 Missense_Mutation p.R367C 0.33 tolerated(0.07) benign(0.007) TCGA-BA-A6DA-01 7 27149906 27149906 C A HOXA3 Silent p.A118A 0.23 TCGA-BA-A6DA-01 7 28031598 28031598 T A JAZF1 Missense_Mutation p.T40S 0.17 tolerated(0.76) benign(0.007) TCGA-BA-A6DA-01 7 31123813 31123813 A T ADCYAP1R1 Missense_Mutation p.H129L 0.16 tolerated(0.64) possibly_damaging(0.456) TCGA-BA-A6DA-01 7 31126602 31126602 A G ADCYAP1R1 Missense_Mutation p.Y290C 0.24 tolerated(0.09) possibly_damaging(0.89) TCGA-BA-A6DA-01 7 31736683 31736683 C A PPP1R17 Missense_Mutation p.P114T 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BA-A6DA-01 7 33044860 33044860 T C FKBP9 Missense_Mutation p.I537T 0.13 tolerated(0.33) benign(0.309) TCGA-BA-A6DA-01 7 36438973 36438973 G T ANLN Missense_Mutation p.R153L 0.26 deleterious(0) probably_damaging(0.991) TCGA-BA-A6DA-01 7 36458900 36458900 A T ANLN Missense_Mutation p.S561C 0.28 deleterious(0) probably_damaging(0.992) TCGA-BA-A6DA-01 7 36917673 36917673 G T ELMO1 Nonsense_Mutation p.Y588* 0.20 TCGA-BA-A6DA-01 7 37172764 37172764 C T ELMO1 Missense_Mutation p.A388T 0.12 deleterious(0) probably_damaging(0.917) TCGA-BA-A6DA-01 7 37903065 37903065 G T NME8 Splice_Site p.X152_splice 0.24 TCGA-BA-A6DA-01 7 48141467 48141467 G T UPP1 Missense_Mutation p.R70M 0.28 tolerated(0.16) benign(0.057) TCGA-BA-A6DA-01 7 49842323 49842323 G T VWC2 Missense_Mutation p.R238M 0.28 deleterious(0.01) possibly_damaging(0.771) TCGA-BA-A6DA-01 7 57188112 57188112 G T ZNF479 Missense_Mutation p.S337Y 0.21 tolerated(0.15) benign(0.247) TCGA-BA-A6DA-01 7 66479503 66479503 G - TYW1 Frame_Shift_Del p.V176Yfs*32 0.23 TCGA-BA-A6DA-01 7 6731953 6731953 T A ZNF12 Missense_Mutation p.Y207F 0.21 tolerated(0.11) benign(0.011) TCGA-BA-A6DA-01 7 77885797 77885797 G T MAGI2 Missense_Mutation p.L504M 0.21 tolerated(0.27) probably_damaging(1) TCGA-BA-A6DA-01 7 82474617 82474617 T A PCLO Silent p.S4672S 0.14 TCGA-BA-A6DA-01 7 82579063 82579063 G - PCLO Frame_Shift_Del p.P3614Lfs*23 0.16 TCGA-BA-A6DA-01 7 92735238 92735238 C A SAMD9 Missense_Mutation p.G58V 0.21 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DA-01 7 94540305 94540305 G T PPP1R9A Missense_Mutation p.G294C 0.15 deleterious(0.02) possibly_damaging(0.547) TCGA-BA-A6DA-01 7 94540364 94540364 C A PPP1R9A Silent p.P313P 0.17 TCGA-BA-A6DA-01 7 96651661 96651661 C G DLX5 Missense_Mutation p.E126Q 0.27 deleterious(0.04) benign(0.015) TCGA-BA-A6DA-01 7 99699482 99699482 C G MCM7 5'UTR 0.27 TCGA-BA-A6DA-01 8 104948796 104948796 G T RIMS2 Missense_Mutation p.R798I 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BA-A6DA-01 8 113237019 113237019 G A CSMD3 Missense_Mutation p.T3702M 0.31 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DA-01 8 113569164 113569164 A G CSMD3 Silent p.C1354C 0.30 TCGA-BA-A6DA-01 8 113812446 113812446 C A CSMD3 Silent p.L639L 0.33 TCGA-BA-A6DA-01 8 113966957 113966957 A T CSMD3 Missense_Mutation p.F459Y 0.09 deleterious(0.02) probably_damaging(0.943) TCGA-BA-A6DA-01 8 117859706 117859706 G A RAD21 3'UTR 0.24 TCGA-BA-A6DA-01 8 125332407 125332407 C G TMEM65 Missense_Mutation p.A181P 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-BA-A6DA-01 8 133909916 133909916 C G TG Silent p.R1008R 0.15 TCGA-BA-A6DA-01 8 134146974 134146974 G C TG Missense_Mutation p.G2748A 0.16 tolerated(0.38) benign(0.004) TCGA-BA-A6DA-01 8 135622730 135622730 G A ZFAT Missense_Mutation p.A206V 0.13 deleterious(0.04) possibly_damaging(0.734) TCGA-BA-A6DA-01 8 135649725 135649725 C T ZFAT Missense_Mutation p.G143S 0.22 deleterious(0.02) benign(0.141) TCGA-BA-A6DA-01 8 139620205 139620205 C T COL22A1 Missense_Mutation p.G1336R 0.08 unknown(0) TCGA-BA-A6DA-01 8 144733583 144733583 C A ZNF623 Missense_Mutation p.S514Y 0.28 deleterious_low_confidence(0.03) benign(0.094) TCGA-BA-A6DA-01 8 144733584 144733584 C T ZNF623 Silent p.S514S 0.29 TCGA-BA-A6DA-01 8 145620155 145620155 C T CPSF1 Missense_Mutation p.G1119D 0.16 tolerated(0.07) possibly_damaging(0.737) TCGA-BA-A6DA-01 8 145639732 145639732 C A SLC39A4 Missense_Mutation p.G355W 0.24 deleterious(0.04) possibly_damaging(0.773) TCGA-BA-A6DA-01 8 2054184 2054184 G T MYOM2 Missense_Mutation p.D963Y 0.27 deleterious(0.02) probably_damaging(0.968) TCGA-BA-A6DA-01 8 23049474 23049474 C T TNFRSF10A Nonsense_Mutation p.W380* 0.38 TCGA-BA-A6DA-01 8 41525935 41525935 C T ANK1 Silent p.Q1789Q 0.44 TCGA-BA-A6DA-01 8 55049212 55049212 A T MRPL15 Missense_Mutation p.N84Y 0.37 tolerated(0.41) benign(0.196) TCGA-BA-A6DA-01 8 61748739 61748739 G C CHD7 Missense_Mutation p.D1296H 0.39 probably_damaging(0.998) TCGA-BA-A6DA-01 8 67546742 67546742 G A VCPIP1 Silent p.H1221H 0.36 TCGA-BA-A6DA-01 8 71593478 71593478 G T XKR9 Missense_Mutation p.W62L 0.12 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 8 71593479 71593479 G T XKR9 Missense_Mutation p.W62C 0.13 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 8 72971646 72971646 T C TRPA1 Silent p.L324L 0.44 TCGA-BA-A6DA-01 8 75737392 75737392 C G PI15 Intron 0.46 TCGA-BA-A6DA-01 9 104375799 104375799 A T GRIN3A Silent p.I875I 0.17 TCGA-BA-A6DA-01 9 107267257 107267257 T C OR13F1 Silent p.F238F 0.07 TCGA-BA-A6DA-01 9 112963681 112963681 C G C9orf152 Silent p.L89L 0.41 TCGA-BA-A6DA-01 9 117092820 117092820 C G ORM2 Missense_Mutation p.T74R 0.47 tolerated(0.21) probably_damaging(0.984) TCGA-BA-A6DA-01 9 122075500 122075500 C A BRINP1 Missense_Mutation p.R45M 0.57 deleterious(0) probably_damaging(0.961) TCGA-BA-A6DA-01 9 122075564 122075564 G T BRINP1 Missense_Mutation p.H24N 0.45 tolerated_low_confidence(0.31) benign(0.006) TCGA-BA-A6DA-01 9 123210239 123210239 G A CDK5RAP2 Nonsense_Mutation p.Q987* 0.49 TCGA-BA-A6DA-01 9 123367689 123367689 C G MEGF9 Missense_Mutation p.G530R 0.05 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 9 12694237 12694237 C A TYRP1 Missense_Mutation p.H81N 0.40 deleterious(0.01) possibly_damaging(0.501) TCGA-BA-A6DA-01 9 129377708 129377708 C T LMX1B Silent p.P62P 0.58 TCGA-BA-A6DA-01 9 130478298 130478298 T G PTRH1 5'UTR 0.13 TCGA-BA-A6DA-01 9 139396299 139396299 G A NOTCH1 Missense_Mutation p.H1847Y 0.12 deleterious(0) possibly_damaging(0.501) TCGA-BA-A6DA-01 9 140130486 140130486 T A SLC34A3 Missense_Mutation p.L473Q 0.61 deleterious(0) probably_damaging(0.992) TCGA-BA-A6DA-01 9 21971063 21971063 G - CDKN2A Frame_Shift_Del p.R99Gfs*47 0.37 TCGA-BA-A6DA-01 9 71114261 71114261 A T PGM5 Missense_Mutation p.H533L 0.36 tolerated(0.67) benign(0.005) TCGA-BA-A6DA-01 9 71395143 71395143 G C FAM122A Silent p.A21A 0.41 TCGA-BA-A6DA-01 9 77377561 77377561 G T TRPM6 Silent p.G1342G 0.45 TCGA-BA-A6DA-01 9 78794514 78794514 C T PCSK5 Missense_Mutation p.P635S 0.14 tolerated(0.13) benign(0.191) TCGA-BA-A6DA-01 9 78973610 78973610 C G PCSK5 Silent p.P1785P 0.10 TCGA-BA-A6DA-01 9 79323319 79323319 C - PRUNE2 Frame_Shift_Del p.E1291Kfs*54 0.35 TCGA-BA-A6DA-01 X 109441841 109441841 G A AMMECR1 Silent p.T303T 0.42 TCGA-BA-A6DA-01 X 110653581 110653581 T C DCX Missense_Mutation p.R97G 0.27 deleterious(0.01) benign(0.224) TCGA-BA-A6DA-01 X 110653583 110653583 G A DCX Missense_Mutation p.S96F 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.454) TCGA-BA-A6DA-01 X 117900505 117900505 A G IL13RA1 Missense_Mutation p.K281E 0.26 tolerated(0.23) benign(0.094) TCGA-BA-A6DA-01 X 118124510 118124510 G T LONRF3 Missense_Mutation p.A468S 0.29 tolerated(1) benign(0.045) TCGA-BA-A6DA-01 X 118219356 118219356 G C KIAA1210 Missense_Mutation p.P1613R 0.35 deleterious(0.01) possibly_damaging(0.857) TCGA-BA-A6DA-01 X 119077278 119077278 C A NKAP Silent p.S97S 0.28 TCGA-BA-A6DA-01 X 119504590 119504590 T C ATP1B4 Missense_Mutation p.F117L 0.31 tolerated(1) benign(0.147) TCGA-BA-A6DA-01 X 120181994 120181994 C A GLUD2 Nonsense_Mutation p.Y152* 0.27 TCGA-BA-A6DA-01 X 123554210 123554210 C A TENM1 Missense_Mutation p.G1645W 0.19 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 X 123839067 123839067 C A TENM1 Missense_Mutation p.A271S 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.497) TCGA-BA-A6DA-01 X 123839068 123839068 A G TENM1 Silent p.S270S 0.33 TCGA-BA-A6DA-01 X 124097570 124097570 A T TENM1 Silent p.P11P 0.28 TCGA-BA-A6DA-01 X 131208307 131208307 G A MST4 3'UTR 0.26 TCGA-BA-A6DA-01 X 135764128 135764128 C A ARHGEF6 Splice_Site p.X494_splice 0.36 TCGA-BA-A6DA-01 X 138880488 138880488 T C ATP11C Silent p.E270E 0.29 TCGA-BA-A6DA-01 X 141291252 141291252 G T MAGEC2 Nonsense_Mutation p.Y174* 0.21 TCGA-BA-A6DA-01 X 142717002 142717002 A C SLITRK4 Missense_Mutation p.F641L 0.21 tolerated(0.59) probably_damaging(0.952) TCGA-BA-A6DA-01 X 142717055 142717055 T A SLITRK4 Missense_Mutation p.I624F 0.21 deleterious(0) benign(0.422) TCGA-BA-A6DA-01 X 142718335 142718335 C A SLITRK4 Missense_Mutation p.G197V 0.25 deleterious(0) probably_damaging(1) TCGA-BA-A6DA-01 X 142803930 142803930 G A SPANXN2 5'UTR 0.27 TCGA-BA-A6DA-01 X 142967296 142967296 G T UBE2NL Missense_Mutation p.A32S 0.23 tolerated(0.18) benign(0.061) TCGA-BA-A6DA-01 X 144337333 144337333 G T SPANXN1 Nonstop_Mutation p.*73Lext*? 0.13 TCGA-BA-A6DA-01 X 144904343 144904343 G C SLITRK2 Missense_Mutation p.E134Q 0.34 tolerated(0.05) possibly_damaging(0.512) TCGA-BA-A6DA-01 X 146340297 146340297 C A MIR509-2 RNA 0.32 TCGA-BA-A6DA-01 X 148044366 148044366 G T AFF2 Missense_Mutation p.G938C 0.27 tolerated(0.06) possibly_damaging(0.628) TCGA-BA-A6DA-01 X 148048358 148048358 C G AFF2 Missense_Mutation p.I984M 0.18 tolerated(0.22) possibly_damaging(0.476) TCGA-BA-A6DA-01 X 150348694 150348694 C A GPR50 Silent p.T213T 0.20 TCGA-BA-A6DA-01 X 150349070 150349070 C A GPR50 Missense_Mutation p.R339S 0.27 deleterious(0) possibly_damaging(0.785) TCGA-BA-A6DA-01 X 151821293 151821293 G T GABRQ Missense_Mutation p.R483L 0.18 tolerated(0.69) benign(0.012) TCGA-BA-A6DA-01 X 151997742 151997742 G C CETN2 Missense_Mutation p.T81R 0.24 tolerated(0.06) benign(0.035) TCGA-BA-A6DA-01 X 152036165 152036165 G A NSDHL Missense_Mutation p.G246E 0.17 deleterious(0) probably_damaging(0.952) TCGA-BA-A6DA-01 X 152088889 152088889 G A ZNF185 Missense_Mutation p.G183D 0.21 deleterious(0) benign(0.06) TCGA-BA-A6DA-01 X 153134345 153134345 C A L1CAM Missense_Mutation p.A444S 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-BA-A6DA-01 X 153588586 153588586 G C FLNA Missense_Mutation p.L1193V 0.28 deleterious(0.04) probably_damaging(0.993) TCGA-BA-A6DA-01 X 153594929 153594929 C A FLNA Splice_Site p.X355_splice 0.15 TCGA-BA-A6DA-01 X 153741192 153741192 C A FAM3A Missense_Mutation p.G28C 0.20 deleterious(0.01) possibly_damaging(0.902) TCGA-BA-A6DA-01 X 153762678 153762678 G A G6PD Silent p.F203F 0.16 TCGA-BA-A6DA-01 X 154493699 154493699 G C RAB39B 5'UTR 0.24 TCGA-BA-A6DA-01 X 155004339 155004339 T A SPRY3 Missense_Mutation p.V269E 0.23 deleterious(0) possibly_damaging(0.696) TCGA-BA-A6DA-01 X 15603612 15603612 C T ACE2 Missense_Mutation p.A296T 0.27 tolerated(0.36) benign(0.016) TCGA-BA-A6DA-01 X 18622162 18622162 G T CDKL5 Missense_Mutation p.G373V 0.32 tolerated_low_confidence(0.19) benign(0.021) TCGA-BA-A6DA-01 X 19702001 19702001 C A SH3KBP1 Missense_Mutation p.K222N 0.28 tolerated(0.06) benign(0.034) TCGA-BA-A6DA-01 X 27998581 27998581 C T DCAF8L1 Missense_Mutation p.E291K 0.33 tolerated(1) benign(0) TCGA-BA-A6DA-01 X 30269432 30269432 G A MAGEB1 Silent p.P274P 0.30 TCGA-BA-A6DA-01 X 47272914 47272914 G T ZNF157 Missense_Mutation p.R481L 0.39 tolerated(0.38) benign(0.023) TCGA-BA-A6DA-01 X 50350537 50350537 G T SHROOM4 Missense_Mutation p.P1202Q 0.27 deleterious(0.01) benign(0.039) TCGA-BA-A6DA-01 X 54814944 54814944 A T ITIH6 Missense_Mutation p.V252E 0.20 deleterious(0) probably_damaging(0.94) TCGA-BA-A6DA-01 X 63488477 63488477 C G MTMR8 Missense_Mutation p.L685F 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-BA-A6DA-01 X 65474968 65474968 A G HEPH Silent p.A939A 0.35 TCGA-BA-A6DA-01 X 69670069 69670069 G A DLG3 Missense_Mutation p.D252N 0.22 tolerated(0.06) probably_damaging(0.986) TCGA-BA-A6DA-01 X 70147853 70147853 G A SLC7A3 Missense_Mutation p.P280S 0.22 deleterious(0) possibly_damaging(0.901) TCGA-BA-A6DA-01 X 83128482 83128482 G T CYLC1 Missense_Mutation p.D256Y 0.26 deleterious(0.02) probably_damaging(0.934) TCGA-BA-A6DA-01 X 9001122 9001122 G T FAM9B Intron 0.29 TCGA-BA-A6DA-01 X 91090605 91090605 G T PCDH11X Missense_Mutation p.M34I 0.31 tolerated(0.29) benign(0.324) TCGA-BA-A6DA-01 X 99917255 99917255 C T SRPX2 Silent p.S82S 0.25 TCGA-BA-A6DB-01 11 57296146 57296146 G A TIMM10 3'UTR 0.09 TCGA-BA-A6DB-01 11 82536060 82536060 C T PRCP Missense_Mutation p.R481H 0.11 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DB-01 13 29608227 29608227 C A MTUS2 Missense_Mutation p.T814K 0.09 deleterious(0.01) benign(0.372) TCGA-BA-A6DB-01 15 50875314 50875314 T C TRPM7 Missense_Mutation p.E1510G 0.06 tolerated_low_confidence(0.08) benign(0.01) TCGA-BA-A6DB-01 15 79755514 79755514 C T KIAA1024 Missense_Mutation p.L802F 0.05 deleterious(0.01) probably_damaging(0.958) TCGA-BA-A6DB-01 15 85400343 85400343 G C ALPK3 Missense_Mutation p.G994R 0.10 deleterious_low_confidence(0.02) benign(0.086) TCGA-BA-A6DB-01 16 27518206 27518206 C T GTF3C1 Missense_Mutation p.R505Q 0.10 tolerated(0.63) benign(0.001) TCGA-BA-A6DB-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.17 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DB-01 18 2921574 2921574 G A LPIN2 Missense_Mutation p.P800L 0.09 deleterious(0) probably_damaging(0.959) TCGA-BA-A6DB-01 19 37854409 37854409 A T HKR1 Missense_Mutation p.H571L 0.18 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DB-01 1 160466091 160466091 C G SLAMF6 Missense_Mutation p.E48Q 0.05 deleterious(0.04) benign(0.236) TCGA-BA-A6DB-01 1 17548859 17548859 G A PADI1 Missense_Mutation p.R56H 0.04 tolerated(0.1) possibly_damaging(0.474) TCGA-BA-A6DB-01 1 247464555 247464555 C A ZNF496 Nonsense_Mutation p.E344* 0.04 TCGA-BA-A6DB-01 1 40758218 40758218 A G ZMPSTE24 Silent p.L435L 0.11 TCGA-BA-A6DB-01 1 63069735 63069735 C T ANGPTL3 Missense_Mutation p.H343Y 0.04 tolerated(0.6) benign(0.02) TCGA-BA-A6DB-01 20 62196246 62196246 G A HELZ2 Missense_Mutation p.P1310L 0.09 tolerated(0.3) benign(0) TCGA-BA-A6DB-01 22 45133065 45133065 C T PRR5 Missense_Mutation p.R392W 0.07 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-BA-A6DB-01 2 198949735 198949735 G A PLCL1 Silent p.P498P 0.07 TCGA-BA-A6DB-01 3 183210454 183210454 G A KLHL6 Silent p.T464T 0.10 TCGA-BA-A6DB-01 5 118728831 118728831 C T TNFAIP8 Nonsense_Mutation p.Q118* 0.22 TCGA-BA-A6DB-01 6 112671339 112671339 C T RFPL4B Silent p.S143S 0.08 TCGA-BA-A6DB-01 7 82784965 82784965 G C PCLO Missense_Mutation p.P331R 0.09 unknown(0) TCGA-BA-A6DB-01 8 73480479 73480479 C A KCNB2 Silent p.T170T 0.09 TCGA-BA-A6DB-01 X 49454129 49454129 C T PAGE1 Missense_Mutation p.D104N 0.08 tolerated(0.28) possibly_damaging(0.822) TCGA-BA-A6DD-01 10 129877893 129877893 A C PTPRE Silent p.G654G 0.10 TCGA-BA-A6DD-01 11 118881943 118881943 A G CCDC84 Missense_Mutation p.I155V 0.12 deleterious(0) probably_damaging(0.995) TCGA-BA-A6DD-01 12 109998858 109998858 G A MMAB Missense_Mutation p.R191W 0.14 deleterious(0.01) probably_damaging(1) TCGA-BA-A6DD-01 12 122677440 122677440 A T LRRC43 Missense_Mutation p.E413V 0.15 tolerated(0.05) benign(0.001) TCGA-BA-A6DD-01 12 95604446 95604446 C A FGD6 Missense_Mutation p.S205I 0.07 deleterious_low_confidence(0.03) benign(0.08) TCGA-BA-A6DD-01 14 20389008 20389008 G T OR4K5 Missense_Mutation p.M81I 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-BA-A6DD-01 14 67745984 67745984 C G MPP5 Missense_Mutation p.R33G 0.06 deleterious(0) possibly_damaging(0.796) TCGA-BA-A6DD-01 14 96706870 96706870 G A BDKRB2 Missense_Mutation p.V69M 0.13 tolerated(0.11) benign(0.049) TCGA-BA-A6DD-01 15 57913834 57913834 A T MYZAP Missense_Mutation p.K116M 0.10 tolerated(0.14) possibly_damaging(0.804) TCGA-BA-A6DD-01 15 72142383 72142383 G C MYO9A Missense_Mutation p.T2236S 0.06 deleterious(0.04) possibly_damaging(0.695) TCGA-BA-A6DD-01 15 74474544 74474544 A T STRA6 Missense_Mutation p.V532D 0.10 tolerated(0.13) possibly_damaging(0.789) TCGA-BA-A6DD-01 16 10032120 10032120 C T GRIN2A Missense_Mutation p.E235K 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-BA-A6DD-01 16 27777718 27777718 C T KIAA0556 Missense_Mutation p.R1300C 0.11 tolerated(0.18) benign(0.008) TCGA-BA-A6DD-01 16 28596281 28596281 C T CCDC101 Silent p.T41T 0.10 TCGA-BA-A6DD-01 16 58071493 58071493 G C MMP15 Missense_Mutation p.V94L 0.08 deleterious(0.01) possibly_damaging(0.766) TCGA-BA-A6DD-01 17 16336965 16336965 C T TRPV2 Silent p.T689T 0.25 TCGA-BA-A6DD-01 17 5347733 5347733 C G DHX33 Missense_Mutation p.G639A 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-BA-A6DD-01 17 73484066 73484066 C T KIAA0195 Missense_Mutation p.L155F 0.08 tolerated(0.1) possibly_damaging(0.883) TCGA-BA-A6DD-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.33 tolerated(0.13) possibly_damaging(0.631) TCGA-BA-A6DD-01 17 79985312 79985312 G A LRRC45 Silent p.K275K 0.11 TCGA-BA-A6DD-01 17 80040889 80040889 C T FASN Missense_Mutation p.A1890T 0.07 tolerated(1) benign(0.001) TCGA-BA-A6DD-01 19 23329013 23329013 T A ZNF730 Silent p.I389I 0.20 TCGA-BA-A6DD-01 19 2422072 2422072 C T TMPRSS9 Missense_Mutation p.T758M 0.11 deleterious(0.04) benign(0.032) TCGA-BA-A6DD-01 19 9091432 9091432 G T MUC16 Missense_Mutation p.S128Y 0.09 unknown(0) TCGA-BA-A6DD-01 1 10435384 10435384 G T KIF1B Missense_Mutation p.M1741I 0.08 tolerated(0.21) benign(0.068) TCGA-BA-A6DD-01 1 158389942 158389942 A G OR10K2 Missense_Mutation p.S239P 0.06 deleterious(0) probably_damaging(1) TCGA-BA-A6DD-01 1 181701953 181701953 C T CACNA1E Missense_Mutation p.R911W 0.09 deleterious(0) possibly_damaging(0.689) TCGA-BA-A6DD-01 1 196659265 196659265 C G CFH Missense_Mutation p.S411C 0.09 deleterious(0) possibly_damaging(0.799) TCGA-BA-A6DD-01 1 26887589 26887589 G T RPS6KA1 Silent p.R474R 0.07 TCGA-BA-A6DD-01 1 50574828 50574828 G A ELAVL4 Intron 0.08 TCGA-BA-A6DD-01 1 85506782 85506782 G A MCOLN3 Silent p.L103L 0.05 TCGA-BA-A6DD-01 20 46252789 46252789 A T NCOA3 Missense_Mutation p.K73M 0.12 deleterious(0) probably_damaging(0.99) TCGA-BA-A6DD-01 21 32617877 32617877 G A TIAM1 Missense_Mutation p.A504V 0.13 deleterious(0) benign(0.438) TCGA-BA-A6DD-01 21 40558868 40558868 T C BRWD1 3'UTR 0.19 TCGA-BA-A6DD-01 2 163360993 163360993 A G KCNH7 Missense_Mutation p.V363A 0.11 tolerated(0.09) benign(0.443) TCGA-BA-A6DD-01 2 190044274 190044274 C T COL5A2 Silent p.G19G 0.15 TCGA-BA-A6DD-01 2 192250758 192250758 A G MYO1B Missense_Mutation p.N501S 0.08 tolerated(0.59) benign(0.062) TCGA-BA-A6DD-01 2 202337801 202337801 T A STRADB Splice_Site p.X105_splice 0.11 TCGA-BA-A6DD-01 2 215617235 215617235 C A BARD1 Missense_Mutation p.S538I 0.09 deleterious(0.04) benign(0.014) TCGA-BA-A6DD-01 2 233409224 233409224 C T CHRNG Missense_Mutation p.R395C 0.10 deleterious(0.04) benign(0.066) TCGA-BA-A6DD-01 2 85553654 85553654 T C TGOLN2 Missense_Mutation p.I401V 0.15 tolerated(0.09) benign(0.274) TCGA-BA-A6DD-01 2 96953193 96953193 C T SNRNP200 Silent p.L1156L 0.10 TCGA-BA-A6DD-01 2 99944026 99944026 A T TXNDC9 Missense_Mutation p.C94S 0.10 deleterious(0) probably_damaging(0.925) TCGA-BA-A6DD-01 3 123451756 123451756 G T MYLK Silent p.T501T 0.26 TCGA-BA-A6DD-01 3 141535597 141535597 C T GRK7 Missense_Mutation p.T456M 0.08 deleterious(0.02) possibly_damaging(0.628) TCGA-BA-A6DD-01 3 9695337 9695337 G T MTMR14 Silent p.L64L 0.22 TCGA-BA-A6DD-01 4 113436581 113436581 T C NEUROG2 Silent p.L17L 0.24 TCGA-BA-A6DD-01 4 129043120 129043120 A C LARP1B Missense_Mutation p.N434T 0.13 deleterious(0) benign(0.071) TCGA-BA-A6DD-01 4 165878636 165878636 A G FAM218A Silent p.S154S 0.17 TCGA-BA-A6DD-01 4 44638032 44638032 C T YIPF7 Missense_Mutation p.A87T 0.16 tolerated(1) benign(0) TCGA-BA-A6DD-01 4 6878388 6878388 A T KIAA0232 Missense_Mutation p.E1304D 0.10 tolerated_low_confidence(0.13) benign(0.011) TCGA-BA-A6DD-01 5 140731367 140731367 C T PCDHGB1 Missense_Mutation p.R514C 0.10 deleterious(0.04) probably_damaging(0.996) TCGA-BA-A6DD-01 5 140871023 140871023 C T PCDHGC5 Missense_Mutation p.P739L 0.08 tolerated(0.23) benign(0) TCGA-BA-A6DD-01 5 145252448 145252448 G A GRXCR2 Silent p.S28S 0.07 TCGA-BA-A6DD-01 5 80640726 80640726 A T ACOT12 Missense_Mutation p.I303N 0.09 deleterious(0) possibly_damaging(0.836) TCGA-BA-A6DD-01 6 25983471 25983471 C T TRIM38 Silent p.Y318Y 0.13 TCGA-BA-A6DD-01 6 36870018 36870018 A T C6orf89 Missense_Mutation p.I78F 0.10 deleterious(0) possibly_damaging(0.844) TCGA-BA-A6DD-01 6 64394926 64394926 A G PHF3 Missense_Mutation p.I435V 0.10 tolerated_low_confidence(0.26) benign(0.004) TCGA-BA-A6DD-01 7 26404670 26404670 A G SNX10 Silent p.Q72Q 0.05 TCGA-BA-A6DD-01 7 38402656 38402656 G T TRGV2 Missense_Mutation p.L55I 0.14 tolerated(0.06) possibly_damaging(0.524) TCGA-BA-A6DD-01 7 65426002 65426002 C G GUSB Missense_Mutation p.R613T 0.12 deleterious(0) probably_damaging(1) TCGA-BA-A6DD-01 7 90895444 90895444 T G FZD1 Missense_Mutation p.S417A 0.11 deleterious(0.04) possibly_damaging(0.456) TCGA-BA-A6DD-01 8 38006158 38006158 C T STAR Splice_Site p.X60_splice 0.14 TCGA-BA-A6DD-01 9 114520394 114520394 C A C9orf84 Missense_Mutation p.E162D 0.23 tolerated(0.07) possibly_damaging(0.616) TCGA-BA-A6DD-01 9 123914807 123914807 A G CNTRL Silent p.K1336K 0.07 TCGA-BA-A6DD-01 9 133755972 133755972 G T ABL1 Missense_Mutation p.R552S 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-BA-A6DD-01 9 19102605 19102605 C A HAUS6 Missense_Mutation p.W15C 0.12 deleterious(0) probably_damaging(1) TCGA-BA-A6DD-01 9 21968242 21968242 C T CDKN2A Splice_Site 0.16 TCGA-BA-A6DD-01 9 36058859 36058859 T G RECK Missense_Mutation p.H65Q 0.13 deleterious_low_confidence(0.01) benign(0.014) TCGA-BA-A6DD-01 9 71098912 71098912 C T PGM5 Missense_Mutation p.T476M 0.09 deleterious(0.03) benign(0.018) TCGA-BA-A6DD-01 9 99157147 99157147 G A ZNF367 Missense_Mutation p.R217C 0.30 deleterious(0) probably_damaging(0.965) TCGA-BA-A6DD-01 X 135741436 135741436 A C CD40LG Missense_Mutation p.K216N 0.15 tolerated(0.16) benign(0.018) TCGA-BA-A6DE-01 10 127698083 127698110 TGCATCTTGGGGGGCTGTACATTTATTT - FANK1 3'UTR 0.36 TCGA-BA-A6DE-01 10 15106498 15106498 A T OLAH Silent p.V186V 0.30 TCGA-BA-A6DE-01 10 31809603 31809603 C T ZEB1 Missense_Mutation p.S448L 0.06 tolerated(0.7) benign(0.071) TCGA-BA-A6DE-01 10 70441247 70441247 T C TET1 Splice_Site p.X1638_splice 0.50 TCGA-BA-A6DE-01 10 91492823 91492823 C T KIF20B Intron 0.56 TCGA-BA-A6DE-01 11 113860193 113860193 G A HTR3A Missense_Mutation p.G420E 0.20 tolerated(0.52) benign(0.012) TCGA-BA-A6DE-01 11 119020694 119020694 G C ABCG4 Missense_Mutation p.E7Q 0.31 deleterious_low_confidence(0.02) benign(0.287) TCGA-BA-A6DE-01 11 1215817 1215817 C T MUC5AC RNA 0.23 TCGA-BA-A6DE-01 11 122817446 122817446 C T C11orf63 Silent p.G625G 0.25 TCGA-BA-A6DE-01 11 13513987 13513987 C G PTH Missense_Mutation p.D105H 0.27 deleterious(0.04) probably_damaging(0.977) TCGA-BA-A6DE-01 11 32635093 32635093 G A CCDC73 Missense_Mutation p.S924L 0.31 tolerated(0.09) benign(0.059) TCGA-BA-A6DE-01 11 3380776 3380776 G C ZNF195 Missense_Mutation p.H488D 0.34 deleterious(0) possibly_damaging(0.869) TCGA-BA-A6DE-01 11 40137054 40137054 A G LRRC4C Silent p.F263F 0.27 TCGA-BA-A6DE-01 11 4112585 4112585 C T STIM1 Nonsense_Mutation p.Q539* 0.29 TCGA-BA-A6DE-01 11 45992797 45992797 G T PHF21A Missense_Mutation p.A161D 0.09 deleterious(0) probably_damaging(0.917) TCGA-BA-A6DE-01 11 58978243 58978243 C T MPEG1 Missense_Mutation p.G699D 0.04 tolerated(0.61) benign(0.003) TCGA-BA-A6DE-01 11 597398 597398 C T PHRF1 Missense_Mutation p.A241V 0.11 tolerated(0.39) benign(0.038) TCGA-BA-A6DE-01 11 62296399 62296399 A C AHNAK Missense_Mutation p.D1830E 0.10 possibly_damaging(0.621) TCGA-BA-A6DE-01 11 62297385 62297385 G T AHNAK Missense_Mutation p.H1502N 0.28 benign(0.431) TCGA-BA-A6DE-01 11 62931543 62931543 C T SLC22A25 Missense_Mutation p.G466E 0.11 deleterious(0.02) benign(0.038) TCGA-BA-A6DE-01 11 65360906 65360906 C G KCNK7 Intron 0.40 TCGA-BA-A6DE-01 11 74914426 74914426 C T SLCO2B1 Missense_Mutation p.R635C 0.30 deleterious(0) possibly_damaging(0.79) TCGA-BA-A6DE-01 11 82921384 82921384 C T ANKRD42 Missense_Mutation p.R97W 0.29 deleterious(0) probably_damaging(0.915) TCGA-BA-A6DE-01 12 105150837 105150837 C T CHST11 Silent p.N105N 0.33 TCGA-BA-A6DE-01 12 124496861 124496861 A G ZNF664 Missense_Mutation p.K57R 0.41 deleterious(0.03) possibly_damaging(0.751) TCGA-BA-A6DE-01 12 132633409 132633409 G T NOC4L Missense_Mutation p.M290I 0.24 deleterious(0.01) benign(0.024) TCGA-BA-A6DE-01 12 69135728 69135728 A G NUP107 Missense_Mutation p.M880V 0.45 tolerated(0.88) benign(0.003) TCGA-BA-A6DE-01 12 88379766 88379766 C T C12orf50 Silent p.A329A 0.36 TCGA-BA-A6DE-01 13 25285738 25285738 C A ATP12A 3'UTR 0.47 TCGA-BA-A6DE-01 13 50586468 50586468 T C TRIM13 Missense_Mutation p.I134T 0.66 deleterious(0) benign(0.354) TCGA-BA-A6DE-01 13 70514279 70514279 G T KLHL1 Missense_Mutation p.H303N 0.62 tolerated(1) benign(0.001) TCGA-BA-A6DE-01 14 105174823 105174823 G C INF2 Missense_Mutation p.E596Q 0.26 tolerated(0.07) unknown(0) TCGA-BA-A6DE-01 14 20784496 20784496 G A CCNB1IP1 Missense_Mutation p.R63C 0.28 tolerated(0.07) benign(0.134) TCGA-BA-A6DE-01 14 52534597 52534597 G A NID2 Silent p.R171R 0.28 TCGA-BA-A6DE-01 14 58820424 58820427 AGAC - ARID4A Frame_Shift_Del p.D569Wfs*5 0.30 TCGA-BA-A6DE-01 14 59113333 59113333 G T DACT1 Silent p.A664A 0.40 TCGA-BA-A6DE-01 14 74439610 74439610 C T ENTPD5 Missense_Mutation p.R335Q 0.33 tolerated(0.05) probably_damaging(0.992) TCGA-BA-A6DE-01 14 95921873 95921873 C A SYNE3 Silent p.L326L 0.32 TCGA-BA-A6DE-01 15 52676506 52676506 G A MYO5A Missense_Mutation p.P589L 0.57 tolerated(0.23) benign(0.006) TCGA-BA-A6DE-01 15 83805347 83805347 C A TM6SF1 Missense_Mutation p.P346T 0.25 deleterious(0.02) probably_damaging(0.92) TCGA-BA-A6DE-01 16 2141816 2141816 G A PKD1 Missense_Mutation p.R3835C 0.16 possibly_damaging(0.849) TCGA-BA-A6DE-01 16 21812153 21812153 G T RRN3P1 RNA 0.45 TCGA-BA-A6DE-01 16 28500627 28500627 G A CLN3 Missense_Mutation p.S69L 0.32 tolerated(0.35) benign(0.311) TCGA-BA-A6DE-01 16 3187169 3187169 G C ZNF213 Intron 0.42 TCGA-BA-A6DE-01 16 50642227 50642227 G T NKD1 Missense_Mutation p.R72I 0.30 deleterious(0.01) benign(0.199) TCGA-BA-A6DE-01 16 68405206 68405206 G A SMPD3 Silent p.G293G 0.45 TCGA-BA-A6DE-01 16 68679292 68679292 C T CDH3 Missense_Mutation p.P4S 0.43 tolerated_low_confidence(0.25) unknown(0) TCGA-BA-A6DE-01 16 70507028 70507028 G C FUK Missense_Mutation p.E517Q 0.33 tolerated(0.35) benign(0.079) TCGA-BA-A6DE-01 16 81232629 81232629 A C PKD1L2 Missense_Mutation p.L394R 0.28 deleterious(0) probably_damaging(1) TCGA-BA-A6DE-01 17 18069767 18069767 C T MYO15A Missense_Mutation p.R3294W 0.40 unknown(0) TCGA-BA-A6DE-01 17 47284065 47284065 G T GNGT2 3'UTR 0.32 TCGA-BA-A6DE-01 17 59668091 59668091 C T NACA2 Missense_Mutation p.G151R 0.31 tolerated(0.06) benign(0.011) TCGA-BA-A6DE-01 17 62796837 62796837 C T PLEKHM1P RNA 0.23 TCGA-BA-A6DE-01 17 62796874 62796874 G A PLEKHM1P RNA 0.40 TCGA-BA-A6DE-01 17 7578413 7578413 C T TP53 Missense_Mutation p.V173M 0.56 deleterious(0.02) probably_damaging(1) TCGA-BA-A6DE-01 18 44555357 44555357 G A TCEB3C Missense_Mutation p.S286F 0.03 deleterious(0) benign(0.128) TCGA-BA-A6DE-01 18 47428976 47428976 C A MYO5B Missense_Mutation p.K933N 0.44 deleterious(0) benign(0.211) TCGA-BA-A6DE-01 18 66678188 66678188 A T CCDC102B Missense_Mutation p.Q427H 0.38 deleterious(0) probably_damaging(0.971) TCGA-BA-A6DE-01 19 10202739 10202756 TCCCTAGAGCCCCACGTG - C19orf66 Splice_Site p.X215_splice 0.20 TCGA-BA-A6DE-01 19 10225429 10225429 A G PPAN-P2RY11 3'Flank 0.10 TCGA-BA-A6DE-01 19 12090108 12090108 G A ZNF763 3'UTR 0.25 TCGA-BA-A6DE-01 19 12297828 12297828 G A ZNF136 Missense_Mutation p.R212Q 0.34 tolerated(0.82) benign(0.121) TCGA-BA-A6DE-01 19 32844500 32844500 A G ZNF507 Missense_Mutation p.Y255C 0.26 deleterious(0) probably_damaging(0.984) TCGA-BA-A6DE-01 19 39589756 39589756 G A PAPL Missense_Mutation p.G160D 0.28 tolerated(0.08) possibly_damaging(0.651) TCGA-BA-A6DE-01 19 44223568 44223568 G A IRGC Silent p.A286A 0.33 TCGA-BA-A6DE-01 19 58083364 58083364 T C ZNF416 3'UTR 0.34 TCGA-BA-A6DE-01 1 158323796 158323796 C T CD1E Silent p.L6L 0.37 TCGA-BA-A6DE-01 1 169702093 169702093 C T SELE Silent p.T28T 0.29 TCGA-BA-A6DE-01 1 173616137 173616137 T C ANKRD45 Missense_Mutation p.H115R 0.32 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DE-01 1 176738779 176738779 G T PAPPA2 Missense_Mutation p.D1454Y 0.30 deleterious(0) possibly_damaging(0.907) TCGA-BA-A6DE-01 1 179886985 179886985 G A TOR1AIP1 Missense_Mutation p.D455N 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A6DE-01 1 203014590 203014591 - A PPFIA4 Frame_Shift_Ins p.T255Nfs*4 0.26 TCGA-BA-A6DE-01 1 205633661 205633661 G A SLC45A3 Silent p.L42L 0.28 TCGA-BA-A6DE-01 1 21268820 21268820 T A EIF4G3 Missense_Mutation p.E226V 0.54 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BA-A6DE-01 1 215345397 215345397 T C KCNK2 Missense_Mutation p.F232L 0.36 tolerated(0.51) possibly_damaging(0.907) TCGA-BA-A6DE-01 1 228400227 228400227 C T OBSCN Missense_Mutation p.T248M 0.29 probably_damaging(0.993) TCGA-BA-A6DE-01 1 228461719 228461719 G C OBSCN Missense_Mutation p.E2171Q 0.25 benign(0.176) TCGA-BA-A6DE-01 1 32841954 32841954 C T BSDC1 Silent p.E372E 0.23 TCGA-BA-A6DE-01 1 52211292 52211292 G C OSBPL9 Missense_Mutation p.E158Q 0.22 tolerated(0.08) benign(0.158) TCGA-BA-A6DE-01 1 57480679 57480679 C T DAB1 Missense_Mutation p.E441K 0.29 tolerated(0.53) possibly_damaging(0.557) TCGA-BA-A6DE-01 1 8384648 8384648 C A SLC45A1 Missense_Mutation p.L87M 0.14 deleterious(0.01) probably_damaging(1) TCGA-BA-A6DE-01 1 97770841 97770841 T C DPYD Missense_Mutation p.K758R 0.57 tolerated(0.22) benign(0.006) TCGA-BA-A6DE-01 20 16717971 16717971 A G SNRPB2 Silent p.K101K 0.21 TCGA-BA-A6DE-01 20 44405772 44405772 C G WFDC3 Missense_Mutation p.Q145H 0.07 tolerated(0.07) probably_damaging(0.961) TCGA-BA-A6DE-01 20 44751298 44751298 C G CD40 Missense_Mutation p.I102M 0.30 deleterious(0.03) benign(0.178) TCGA-BA-A6DE-01 20 60775784 60775784 G A MTG2 Missense_Mutation p.G291D 0.39 deleterious(0) probably_damaging(1) TCGA-BA-A6DE-01 20 62173919 62173919 C A SRMS Missense_Mutation p.D221Y 0.37 deleterious(0) probably_damaging(0.994) TCGA-BA-A6DE-01 2 112863615 112863615 C G TMEM87B Missense_Mutation p.S496C 0.35 deleterious(0.03) benign(0.013) TCGA-BA-A6DE-01 2 113590982 113590982 C G IL1B Silent p.L90L 0.26 TCGA-BA-A6DE-01 2 121732644 121732644 G T GLI2 Missense_Mutation p.D443Y 0.24 deleterious(0) probably_damaging(0.928) TCGA-BA-A6DE-01 2 135744717 135744717 C A MAP3K19 Silent p.P575P 0.36 TCGA-BA-A6DE-01 2 187370222 187370222 T A ZC3H15 Silent p.S254S 0.40 TCGA-BA-A6DE-01 2 241569681 241569681 C T GPR35 Silent p.I135I 0.54 TCGA-BA-A6DE-01 2 25038363 25038363 C G CENPO Intron 0.29 TCGA-BA-A6DE-01 2 26667762 26667762 C T DRC1 Nonsense_Mutation p.Q448* 0.27 TCGA-BA-A6DE-01 2 30457289 30457289 G C LBH Silent p.S15S 0.09 TCGA-BA-A6DE-01 2 33783279 33783279 C G RASGRP3 Missense_Mutation p.D527E 0.53 deleterious(0.05) probably_damaging(0.996) TCGA-BA-A6DE-01 2 49191037 49191037 C A FSHR Missense_Mutation p.R308M 0.25 tolerated(0.15) benign(0.038) TCGA-BA-A6DE-01 2 53897731 53897731 G T ASB3 Missense_Mutation p.P524Q 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DE-01 2 53956626 53956626 C T ASB3 Missense_Mutation p.G181E 0.22 tolerated(0.05) benign(0.436) TCGA-BA-A6DE-01 2 73717189 73717189 A G ALMS1 Silent p.Q2700Q 0.29 TCGA-BA-A6DE-01 2 97025968 97025968 T C NCAPH Missense_Mutation p.V482A 0.25 tolerated(1) benign(0.013) TCGA-BA-A6DE-01 3 121491509 121491509 C T IQCB1 Missense_Mutation p.E488K 0.31 deleterious(0.04) probably_damaging(0.91) TCGA-BA-A6DE-01 3 122003178 122003178 A G CASR Missense_Mutation p.K803E 0.35 deleterious(0.01) probably_damaging(0.951) TCGA-BA-A6DE-01 3 135741933 135741933 C G PPP2R3A Intron 0.34 TCGA-BA-A6DE-01 3 151161641 151161641 G T IGSF10 Missense_Mutation p.S1698R 0.25 deleterious(0.02) possibly_damaging(0.598) TCGA-BA-A6DE-01 3 186459915 186459915 C T KNG1 Missense_Mutation p.S577L 0.64 tolerated(0.29) benign(0) TCGA-BA-A6DE-01 3 47484397 47484397 G T SCAP Silent p.I29I 0.39 TCGA-BA-A6DE-01 4 1164230 1164230 G T SPON2 Silent p.V257V 0.23 TCGA-BA-A6DE-01 4 146435666 146435666 G A SMAD1 5'UTR 0.50 TCGA-BA-A6DE-01 4 177105895 177105895 G T SPATA4 3'UTR 0.21 TCGA-BA-A6DE-01 4 70160521 70160521 A G UGT2B28 Silent p.R528R 0.30 TCGA-BA-A6DE-01 4 79793771 79793771 C T BMP2K Missense_Mutation p.P538S 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-BA-A6DE-01 5 13883010 13883010 C T DNAH5 Intron 0.30 TCGA-BA-A6DE-01 5 145442148 145442148 C T SH3RF2 Nonsense_Mutation p.R692* 0.40 TCGA-BA-A6DE-01 5 151179907 151179907 A G G3BP1 Missense_Mutation p.S362G 0.50 tolerated(0.16) benign(0.025) TCGA-BA-A6DE-01 5 151208547 151208547 C T GLRA1 Missense_Mutation p.V332I 0.45 deleterious(0.01) probably_damaging(0.92) TCGA-BA-A6DE-01 5 176678812 176678812 G T NSD1 Nonsense_Mutation p.E1575* 0.48 TCGA-BA-A6DE-01 5 34937698 34937698 G A DNAJC21 Missense_Mutation p.E236K 0.30 deleterious(0.04) benign(0.064) TCGA-BA-A6DE-01 5 5469087 5469087 C G KIAA0947 Missense_Mutation p.L2070V 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BA-A6DE-01 5 89814775 89814775 G T LYSMD3 Nonsense_Mutation p.S261* 0.42 TCGA-BA-A6DE-01 6 119297190 119297190 G C FAM184A Silent p.L825L 0.33 TCGA-BA-A6DE-01 6 146480578 146480578 T C GRM1 Silent p.A265A 0.35 TCGA-BA-A6DE-01 6 25849663 25849663 C G SLC17A3 Missense_Mutation p.R434T 0.26 tolerated(0.18) benign(0.055) TCGA-BA-A6DE-01 6 2836370 2836370 G C SERPINB1 Missense_Mutation p.T180R 0.23 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DE-01 6 36359653 36359653 T - PXT1 Splice_Site p.X101_splice 0.25 TCGA-BA-A6DE-01 6 39877612 39877612 C T MOCS1 Missense_Mutation p.A357T 0.10 tolerated(0.13) possibly_damaging(0.543) TCGA-BA-A6DE-01 6 43113017 43113017 G A PTK7 Silent p.V837V 0.33 TCGA-BA-A6DE-01 6 44900479 44900479 C T SUPT3H Missense_Mutation p.E286K 0.33 tolerated(0.13) benign(0.042) TCGA-BA-A6DE-01 6 52052595 52052595 G T IL17A Missense_Mutation p.W74C 0.29 deleterious(0) probably_damaging(1) TCGA-BA-A6DE-01 6 56458967 56458967 G C DST Missense_Mutation p.Q1451E 0.30 benign(0.275) TCGA-BA-A6DE-01 6 82910367 82910367 T C IBTK Missense_Mutation p.Y950C 0.23 tolerated(0.18) benign(0.001) TCGA-BA-A6DE-01 6 87968972 87968972 A G ZNF292 Silent p.K1875K 0.39 TCGA-BA-A6DE-01 6 96984253 96984253 G A UFL1 Silent p.Q263Q 0.29 TCGA-BA-A6DE-01 7 100678983 100678983 C G MUC17 Missense_Mutation p.T1429S 0.07 unknown(0) TCGA-BA-A6DE-01 7 100686989 100686989 C A MUC17 Missense_Mutation p.P4098T 0.10 unknown(0) TCGA-BA-A6DE-01 7 105182869 105182869 A T RINT1 Silent p.S96S 0.51 TCGA-BA-A6DE-01 7 107207564 107207564 G T DUS4L Missense_Mutation p.D17Y 0.55 deleterious(0.01) possibly_damaging(0.547) TCGA-BA-A6DE-01 7 150746204 150746204 G A ASIC3 Missense_Mutation p.E78K 0.45 deleterious(0.02) possibly_damaging(0.755) TCGA-BA-A6DE-01 7 45697483 45697483 G A ADCY1 Missense_Mutation p.G436R 0.46 deleterious(0) probably_damaging(0.981) TCGA-BA-A6DE-01 7 6621830 6621830 G T ZDHHC4 Silent p.L106L 0.22 TCGA-BA-A6DE-01 7 73960126 73960126 C T GTF2IRD1 Silent p.F605F 0.42 TCGA-BA-A6DE-01 8 139609183 139609183 G A COL22A1 Missense_Mutation p.R1466W 0.24 unknown(0) TCGA-BA-A6DE-01 8 139845379 139845379 C A COL22A1 Missense_Mutation p.D250Y 0.26 unknown(0) TCGA-BA-A6DE-01 8 144996018 144996018 C T PLEC Silent p.R2794R 0.06 TCGA-BA-A6DE-01 8 18393217 18393217 G T PSD3 3'UTR 0.41 TCGA-BA-A6DE-01 8 24775399 24775399 A G NEFM Silent p.K677K 0.45 TCGA-BA-A6DE-01 8 39613376 39613376 T G ADAM2 Missense_Mutation p.Q556H 0.19 tolerated(0.62) benign(0.001) TCGA-BA-A6DE-01 8 62430206 62430206 G A ASPH Silent p.I669I 0.24 TCGA-BA-A6DE-01 8 74922285 74922285 C A LY96 Silent p.T84T 0.28 TCGA-BA-A6DE-01 8 95201502 95201503 AT - CDH17 Frame_Shift_Del p.Y21Wfs*7 0.39 TCGA-BA-A6DE-01 9 103054880 103054880 G A INVS Missense_Mutation p.D781N 0.38 deleterious_low_confidence(0.03) benign(0.005) TCGA-BA-A6DE-01 9 136320459 136320459 G A ADAMTS13 Missense_Mutation p.G1101E 0.28 deleterious(0.02) possibly_damaging(0.864) TCGA-BA-A6DE-01 9 139395110 139395114 GCATC - NOTCH1 Frame_Shift_Del p.D1942Rfs*51 0.59 TCGA-BA-A6DE-01 9 35906559 35906559 A C HRCT1 Missense_Mutation p.H92P 0.39 tolerated_low_confidence(0.3) unknown(0) TCGA-BA-A6DE-01 X 101139765 101139765 T A ZMAT1 Missense_Mutation p.N212Y 0.15 tolerated(0.25) benign(0.08) TCGA-BA-A6DE-01 X 105855263 105855263 G C CXorf57 5'UTR 0.08 TCGA-BA-A6DE-01 X 140984944 140984944 T G MAGEC3 Missense_Mutation p.L467R 0.26 deleterious(0) probably_damaging(0.993) TCGA-BA-A6DE-01 X 153688920 153688920 G A PLXNA3 Missense_Mutation p.E133K 0.56 tolerated(0.07) probably_damaging(0.994) TCGA-BA-A6DE-01 X 44922770 44922770 A - KDM6A Frame_Shift_Del p.Q544Rfs*4 0.37 TCGA-BA-A6DF-01 10 101961881 101961881 C A CHUK Missense_Mutation p.W511C 0.18 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DF-01 10 124045696 124045696 G C BTBD16 Missense_Mutation p.K106N 0.22 tolerated(0.11) possibly_damaging(0.539) TCGA-BA-A6DF-01 10 16794653 16794653 C A RSU1 Splice_Site p.X162_splice 0.08 TCGA-BA-A6DF-01 10 46998915 46998915 C A GPRIN2 Missense_Mutation p.A12E 0.07 tolerated_low_confidence(0.34) benign(0.006) TCGA-BA-A6DF-01 11 120099625 120099625 C T OAF Missense_Mutation p.A199V 0.08 tolerated(0.41) benign(0.002) TCGA-BA-A6DF-01 11 122954517 122954517 G C CLMP Missense_Mutation p.L143V 0.32 deleterious(0.04) benign(0.336) TCGA-BA-A6DF-01 11 17741781 17741781 G A MYOD1 Missense_Mutation p.R151H 0.28 deleterious(0) probably_damaging(0.967) TCGA-BA-A6DF-01 11 40136451 40136451 C G LRRC4C Silent p.P464P 0.18 TCGA-BA-A6DF-01 11 4566590 4566590 T A OR52M1 Missense_Mutation p.L57Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DF-01 11 55607047 55607047 A G OR5D16 Missense_Mutation p.K274E 0.16 deleterious(0.02) possibly_damaging(0.651) TCGA-BA-A6DF-01 11 59609961 59609961 G A GIF Missense_Mutation p.R156C 0.17 tolerated(0.13) probably_damaging(0.935) TCGA-BA-A6DF-01 11 61596042 61596042 C T FADS2 Silent p.I60I 0.22 TCGA-BA-A6DF-01 11 62292516 62292516 C T AHNAK Missense_Mutation p.V3125M 0.17 possibly_damaging(0.9) TCGA-BA-A6DF-01 11 6524004 6524004 T C DNHD1 Silent p.V256V 0.09 TCGA-BA-A6DF-01 11 73429683 73429683 C T RAB6A Intron 0.15 TCGA-BA-A6DF-01 11 75133614 75133614 C T KLHL35 3'UTR 0.16 TCGA-BA-A6DF-01 11 76912672 76912672 C T MYO7A Missense_Mutation p.R1678W 0.15 deleterious(0.02) possibly_damaging(0.502) TCGA-BA-A6DF-01 11 89903252 89903252 G A NAALAD2 Missense_Mutation p.R453K 0.05 deleterious(0.04) probably_damaging(0.995) TCGA-BA-A6DF-01 11 9068965 9068965 C A SCUBE2 Missense_Mutation p.R647I 0.12 tolerated(0.09) benign(0.25) TCGA-BA-A6DF-01 12 109617881 109617881 G A ACACB Missense_Mutation p.A603T 0.16 tolerated(0.05) possibly_damaging(0.647) TCGA-BA-A6DF-01 12 121570733 121570733 G C P2RX7 5'UTR 0.17 TCGA-BA-A6DF-01 12 12974938 12974938 A G DDX47 Missense_Mutation p.K161R 0.20 deleterious(0.02) benign(0.079) TCGA-BA-A6DF-01 12 12977529 12977529 T C DDX47 Missense_Mutation p.L318P 0.21 deleterious(0) possibly_damaging(0.905) TCGA-BA-A6DF-01 12 130883573 130883573 C T RIMBP2 3'UTR 0.14 TCGA-BA-A6DF-01 12 133373153 133373153 G A GOLGA3 Missense_Mutation p.A691V 0.11 tolerated(0.1) benign(0.291) TCGA-BA-A6DF-01 12 48060842 48060842 G A RPAP3 Silent p.I611I 0.09 TCGA-BA-A6DF-01 12 49434415 49434415 G A KMT2D Nonsense_Mutation p.Q2380* 0.18 TCGA-BA-A6DF-01 12 69042539 69042539 G A RAP1B Missense_Mutation p.G12E 0.19 deleterious(0) probably_damaging(1) TCGA-BA-A6DF-01 12 9229471 9229471 C T A2M Missense_Mutation p.G1138E 0.21 tolerated(0.28) benign(0.049) TCGA-BA-A6DF-01 12 99166895 99166895 G T ANKS1B Silent p.L1143L 0.21 TCGA-BA-A6DF-01 13 33760209 33760216 TGTTTCCG - STARD13 Intron 0.25 TCGA-BA-A6DF-01 13 52646189 52646189 A C NEK5 Missense_Mutation p.N605K 0.19 deleterious(0) probably_damaging(0.962) TCGA-BA-A6DF-01 13 67802391 67802391 C T PCDH9 Missense_Mutation p.S61N 0.05 tolerated(0.5) benign(0.013) TCGA-BA-A6DF-01 14 23894526 23894526 G A MYH7 Silent p.L796L 0.14 TCGA-BA-A6DF-01 14 92480763 92480763 C T TRIP11 Missense_Mutation p.D328N 0.19 deleterious(0.02) possibly_damaging(0.798) TCGA-BA-A6DF-01 14 93730165 93730165 T A BTBD7 Missense_Mutation p.H446L 0.16 tolerated(0.23) possibly_damaging(0.777) TCGA-BA-A6DF-01 14 95669476 95669476 G T CLMN Missense_Mutation p.A737D 0.21 deleterious(0) possibly_damaging(0.743) TCGA-BA-A6DF-01 15 44856771 44856771 G T SPG11 Silent p.S2375S 0.14 TCGA-BA-A6DF-01 15 45402885 45402885 C A DUOX2 Silent p.L302L 0.17 TCGA-BA-A6DF-01 15 58254352 58254354 TTG - ALDH1A2 In_Frame_Del p.N369del 0.14 TCGA-BA-A6DF-01 15 72432617 72432617 T - SENP8 3'UTR 0.15 TCGA-BA-A6DF-01 15 89400811 89400811 A G ACAN Silent p.T1665T 0.15 TCGA-BA-A6DF-01 16 19033066 19033066 G A TMC7 Silent p.T192T 0.14 TCGA-BA-A6DF-01 16 2159044 2159044 C T PKD1 Missense_Mutation p.A2042T 0.12 probably_damaging(0.999) TCGA-BA-A6DF-01 16 4016809 4016809 C T ADCY9 Missense_Mutation p.G1010E 0.17 deleterious(0) probably_damaging(0.92) TCGA-BA-A6DF-01 16 67663416 67663438 AAGAAGATTCCTCTGACAGTGGT - CTCF Splice_Site p.X607_splice 0.15 TCGA-BA-A6DF-01 17 29645635 29645637 TGT - EVI2A In_Frame_Del p.N155del 0.16 TCGA-BA-A6DF-01 17 40042444 40042444 C T ACLY Missense_Mutation p.G665S 0.18 deleterious(0) probably_damaging(1) TCGA-BA-A6DF-01 17 42290280 42290280 A G UBTF Silent p.N189N 0.20 TCGA-BA-A6DF-01 17 62493003 62493003 C T POLG2 Silent p.G28G 0.19 TCGA-BA-A6DF-01 17 7399626 7399626 C T POLR2A Silent p.R108R 0.15 TCGA-BA-A6DF-01 17 74076046 74076046 C G ZACN Silent p.L115L 0.20 TCGA-BA-A6DF-01 17 77044177 77044177 G A C1QTNF1 3'UTR 0.23 TCGA-BA-A6DF-01 17 8051406 8051406 C A PER1 Silent p.L381L 0.20 TCGA-BA-A6DF-01 17 80680699 80680699 G A FN3KRP Silent p.E135E 0.16 TCGA-BA-A6DF-01 17 80680718 80680718 C T FN3KRP Missense_Mutation p.R142W 0.19 deleterious(0) possibly_damaging(0.773) TCGA-BA-A6DF-01 17 80685036 80685036 C A FN3KRP Missense_Mutation p.L307M 0.12 deleterious(0) probably_damaging(0.977) TCGA-BA-A6DF-01 18 12825830 12825845 TAGATGTACTGTATAA - PTPN2 Frame_Shift_Del p.T155Nfs*2 0.10 TCGA-BA-A6DF-01 18 19780729 19780729 G A GATA6 Silent p.P577P 0.06 TCGA-BA-A6DF-01 18 51818389 51818389 G A POLI Missense_Mutation p.R462H 0.12 tolerated(0.34) benign(0.001) TCGA-BA-A6DF-01 18 59972701 59972701 G C KIAA1468 Missense_Mutation p.L1195F 0.16 tolerated(0.09) benign(0.429) TCGA-BA-A6DF-01 19 11526654 11526654 G A RGL3 Missense_Mutation p.A199V 0.21 tolerated(0.1) benign(0.029) TCGA-BA-A6DF-01 19 1255048 1255048 G A MIDN Missense_Mutation p.G282R 0.18 deleterious(0) probably_damaging(0.953) TCGA-BA-A6DF-01 19 14263627 14263627 C T LPHN1 Missense_Mutation p.R1136Q 0.15 deleterious(0.02) probably_damaging(1) TCGA-BA-A6DF-01 19 15512056 15512056 C A AKAP8L Missense_Mutation p.A241S 0.14 tolerated(0.81) benign(0.07) TCGA-BA-A6DF-01 19 22846645 22846646 - A ZNF492 Frame_Shift_Ins p.N61Kfs*12 0.38 TCGA-BA-A6DF-01 19 33113417 33113417 C T ANKRD27 Missense_Mutation p.V580I 0.20 tolerated(1) benign(0) TCGA-BA-A6DF-01 19 36211899 36211899 C - KMT2B Frame_Shift_Del p.K553Nfs*52 0.22 TCGA-BA-A6DF-01 19 39025965 39025965 G C RYR1 Missense_Mutation p.D3817H 0.05 benign(0.343) TCGA-BA-A6DF-01 19 42880569 42880569 G T MEGF8 Missense_Mutation p.R2660L 0.12 deleterious(0.01) benign(0.424) TCGA-BA-A6DF-01 19 4294804 4294804 G A TMIGD2 Missense_Mutation p.T139I 0.12 tolerated(0.22) benign(0.011) TCGA-BA-A6DF-01 19 43528980 43528980 C T PSG11 Missense_Mutation p.R98Q 0.21 deleterious(0.03) probably_damaging(1) TCGA-BA-A6DF-01 19 54385779 54385779 T A PRKCG Missense_Mutation p.S11T 0.19 tolerated_low_confidence(0.28) benign(0.003) TCGA-BA-A6DF-01 19 58982600 58982600 C A ZNF324 Silent p.G247G 0.27 TCGA-BA-A6DF-01 19 8045975 8045975 T G ELAVL1 Missense_Mutation p.T90P 0.17 deleterious(0.01) benign(0.023) TCGA-BA-A6DF-01 19 9070969 9070969 T C MUC16 Missense_Mutation p.S5493G 0.13 unknown(0) TCGA-BA-A6DF-01 1 116941554 116941554 C T ATP1A1 Missense_Mutation p.R766C 0.05 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DF-01 1 151021108 151021110 GCC - C1orf56 In_Frame_Del p.C262_P263delinsS 0.43 TCGA-BA-A6DF-01 1 152276245 152276245 C T FLG Missense_Mutation p.R3706H 0.29 unknown(0) TCGA-BA-A6DF-01 1 152284654 152284654 C G FLG Missense_Mutation p.R903T 0.32 possibly_damaging(0.573) TCGA-BA-A6DF-01 1 152284667 152284667 C G FLG Missense_Mutation p.E899Q 0.31 benign(0.168) TCGA-BA-A6DF-01 1 155920659 155920659 G A ARHGEF2 Silent p.P888P 0.46 TCGA-BA-A6DF-01 1 169200024 169200024 C T NME7 Missense_Mutation p.V308I 0.39 tolerated(1) benign(0.014) TCGA-BA-A6DF-01 1 179055002 179055002 C A TOR3A Missense_Mutation p.H205N 0.45 deleterious(0.02) possibly_damaging(0.582) TCGA-BA-A6DF-01 1 237729889 237729889 C T RYR2 Silent p.S1079S 0.35 TCGA-BA-A6DF-01 1 237893651 237893651 T A RYR2 Missense_Mutation p.L3644I 0.32 possibly_damaging(0.74) TCGA-BA-A6DF-01 1 245530218 245530218 G A KIF26B Missense_Mutation p.R183H 0.12 tolerated(0.1) unknown(0) TCGA-BA-A6DF-01 1 43772858 43772858 C A TIE1 Missense_Mutation p.P229Q 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A6DF-01 1 54426145 54426145 C T LRRC42 Missense_Mutation p.S241L 0.45 deleterious(0) probably_damaging(1) TCGA-BA-A6DF-01 1 77752659 77752659 G A AK5 Missense_Mutation p.E32K 0.14 deleterious(0.01) possibly_damaging(0.627) TCGA-BA-A6DF-01 20 55929772 55929772 T C RAE1 Missense_Mutation p.I32T 0.16 tolerated(0.06) possibly_damaging(0.56) TCGA-BA-A6DF-01 20 9402028 9402028 C G PLCB4 Missense_Mutation p.R735G 0.05 deleterious(0) probably_damaging(1) TCGA-BA-A6DF-01 21 38862527 38862527 G T DYRK1A Nonsense_Mutation p.E239* 0.15 TCGA-BA-A6DF-01 22 39627811 39627811 G A PDGFB Missense_Mutation p.P91L 0.26 tolerated(0.12) probably_damaging(1) TCGA-BA-A6DF-01 22 42390637 42390637 G A SEPT3 Silent p.Q310Q 0.18 TCGA-BA-A6DF-01 22 46658193 46658193 C T PKDREJ Missense_Mutation p.D343N 0.22 tolerated(0.27) benign(0.014) TCGA-BA-A6DF-01 22 51154094 51154094 C T SHANK3 Intron 0.15 TCGA-BA-A6DF-01 2 179604390 179604390 C G TTN Missense_Mutation p.V4524L 0.05 TCGA-BA-A6DF-01 2 190636519 190636519 G A ORMDL1 Missense_Mutation p.R146W 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-BA-A6DF-01 2 219674325 219674325 C T CYP27A1 Missense_Mutation p.P94L 0.36 deleterious(0.02) possibly_damaging(0.873) TCGA-BA-A6DF-01 2 219735804 219735804 C T WNT6 Missense_Mutation p.R46W 0.27 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DF-01 2 25472552 25472552 G A DNMT3A Intron 0.05 TCGA-BA-A6DF-01 2 30976005 30976005 G T CAPN13 Missense_Mutation p.P334Q 0.03 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DF-01 2 71191572 71191573 - C ATP6V1B1 Frame_Shift_Ins p.I386Hfs*56 0.29 TCGA-BA-A6DF-01 2 71788949 71788949 C T DYSF Missense_Mutation p.R762C 0.09 deleterious(0) probably_damaging(0.989) TCGA-BA-A6DF-01 2 75196670 75196670 C T POLE4 3'UTR 0.48 TCGA-BA-A6DF-01 3 119426376 119426376 G T MAATS1 Missense_Mutation p.E109D 0.10 tolerated(0.14) benign(0.02) TCGA-BA-A6DF-01 3 121411412 121411412 G A GOLGB1 Nonsense_Mutation p.Q2267* 0.12 TCGA-BA-A6DF-01 3 128200786 128200786 G A GATA2 Missense_Mutation p.S340L 0.11 deleterious(0.04) possibly_damaging(0.885) TCGA-BA-A6DF-01 3 12977263 12977263 C T IQSEC1 Missense_Mutation p.R432Q 0.19 tolerated_low_confidence(0.15) possibly_damaging(0.653) TCGA-BA-A6DF-01 3 130284217 130284217 C A COL6A6 Missense_Mutation p.N347K 0.13 tolerated(0.07) probably_damaging(1) TCGA-BA-A6DF-01 3 131283145 131283145 A G CPNE4 Missense_Mutation p.S326P 0.19 deleterious(0) probably_damaging(0.996) TCGA-BA-A6DF-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.16 tolerated(0.36) benign(0.4) TCGA-BA-A6DF-01 3 186257301 186257301 C T CRYGS Missense_Mutation p.R36H 0.16 deleterious(0.04) benign(0.157) TCGA-BA-A6DF-01 3 47468956 47468956 C A SCAP Missense_Mutation p.Q204H 0.25 tolerated(0.2) benign(0.008) TCGA-BA-A6DF-01 3 49698235 49698235 G A BSN Missense_Mutation p.R2986H 0.31 unknown(0) TCGA-BA-A6DF-01 3 51679077 51679077 C T RAD54L2 Nonsense_Mutation p.R830* 0.14 TCGA-BA-A6DF-01 3 58494664 58494664 C T ACOX2 Missense_Mutation p.E647K 0.14 deleterious(0.01) possibly_damaging(0.804) TCGA-BA-A6DF-01 4 106157590 106157590 C T TET2 Nonsense_Mutation p.Q831* 0.15 TCGA-BA-A6DF-01 4 114680478 114680478 C T CAMK2D Missense_Mutation p.R53K 0.18 deleterious_low_confidence(0.04) benign(0.005) TCGA-BA-A6DF-01 4 141264724 141264724 T C RP11-425I13.3 Intron 0.20 TCGA-BA-A6DF-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.16 deleterious(0) probably_damaging(1) TCGA-BA-A6DF-01 4 164061530 164061530 G A NAF1 Silent p.F241F 0.06 TCGA-BA-A6DF-01 4 174213302 174213302 G A GALNT7 Missense_Mutation p.V211I 0.17 tolerated(0.06) benign(0.333) TCGA-BA-A6DF-01 4 177146431 177146431 C T ASB5 Silent p.L86L 0.17 TCGA-BA-A6DF-01 4 1957799 1957799 T G WHSC1 Missense_Mutation p.F922C 0.15 deleterious(0) probably_damaging(1) TCGA-BA-A6DF-01 4 1991455 1991455 C G NELFA Missense_Mutation p.R186P 0.19 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DF-01 4 55598102 55598102 G A KIT Missense_Mutation p.E767K 0.19 deleterious(0.01) possibly_damaging(0.586) TCGA-BA-A6DF-01 4 57840083 57840085 TCT - NOA1 In_Frame_Del p.E416del 0.21 TCGA-BA-A6DF-01 5 112769745 112769745 G A TSSK1B Silent p.D264D 0.20 TCGA-BA-A6DF-01 5 122718571 122718571 C T CEP120 Missense_Mutation p.V625I 0.22 tolerated(0.2) benign(0.001) TCGA-BA-A6DF-01 5 129520147 129520147 G A CHSY3 Missense_Mutation p.E438K 0.07 tolerated(0.24) benign(0.081) TCGA-BA-A6DF-01 5 137501542 137501542 T C BRD8 Missense_Mutation p.D418G 0.16 deleterious(0.01) benign(0.205) TCGA-BA-A6DF-01 5 137766020 137766020 G A KDM3B Missense_Mutation p.R1659H 0.17 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DF-01 5 140235928 140235928 G A PCDHA10 Missense_Mutation p.V99M 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.498) TCGA-BA-A6DF-01 5 140480924 140480924 C A PCDHB3 Missense_Mutation p.Q231K 0.06 tolerated_low_confidence(0.57) benign(0) TCGA-BA-A6DF-01 5 140745676 140745676 G A PCDHGA5 Silent p.A593A 0.18 TCGA-BA-A6DF-01 5 149576667 149576667 G T SLC6A7 Missense_Mutation p.A138S 0.11 tolerated(0.22) probably_damaging(0.994) TCGA-BA-A6DF-01 5 156593128 156593128 T C FAM71B Missense_Mutation p.M18V 0.22 tolerated(0.83) benign(0.013) TCGA-BA-A6DF-01 5 177035995 177035995 C T B4GALT7 Missense_Mutation p.R270C 0.18 deleterious(0) probably_damaging(0.991) TCGA-BA-A6DF-01 5 52856467 52856467 T A NDUFS4 5'UTR 0.25 TCGA-BA-A6DF-01 5 89757342 89757342 T - MBLAC2 Frame_Shift_Del p.Q161Rfs*36 0.18 TCGA-BA-A6DF-01 5 96460172 96460172 G A LIX1 Nonsense_Mutation p.Q82* 0.19 TCGA-BA-A6DF-01 6 110301323 110301323 C G GPR6 Missense_Mutation p.I336M 0.18 tolerated(0.34) probably_damaging(0.964) TCGA-BA-A6DF-01 6 26445952 26445952 A T BTN3A3 Missense_Mutation p.I152F 0.14 deleterious(0) possibly_damaging(0.512) TCGA-BA-A6DF-01 6 38893984 38893984 C T DNAH8 Nonsense_Mutation p.Q3489* 0.07 TCGA-BA-A6DF-01 6 42935145 42935145 G A PEX6 Silent p.G615G 0.21 TCGA-BA-A6DF-01 6 97575321 97575321 G C KLHL32 Missense_Mutation p.V466L 0.17 tolerated(0.1) benign(0.332) TCGA-BA-A6DF-01 7 100452263 100452263 G T SLC12A9 Missense_Mutation p.G68V 0.18 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DF-01 7 29915498 29915498 C T WIPF3 Missense_Mutation p.A48V 0.22 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DF-01 7 82586121 82586121 G T PCLO Missense_Mutation p.T1383N 0.15 unknown(0) TCGA-BA-A6DF-01 7 86415740 86415740 C T GRM3 Missense_Mutation p.T211I 0.18 deleterious(0) probably_damaging(1) TCGA-BA-A6DF-01 7 8791053 8791053 C A NXPH1 Nonsense_Mutation p.S157* 0.29 TCGA-BA-A6DF-01 7 97821149 97821149 G A LMTK2 Missense_Mutation p.E458K 0.19 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DF-01 7 97873901 97873901 G A TECPR1 Silent p.S171S 0.18 TCGA-BA-A6DF-01 7 99773975 99773975 C T GPC2 Silent p.R60R 0.24 TCGA-BA-A6DF-01 8 100133446 100133446 C T VPS13B Nonsense_Mutation p.Q327* 0.11 TCGA-BA-A6DF-01 8 103664140 103664140 G A KLF10 Silent p.S140S 0.34 TCGA-BA-A6DF-01 8 139626142 139626142 G T COL22A1 Missense_Mutation p.P1316T 0.10 unknown(0) TCGA-BA-A6DF-01 8 141572716 141572716 C T AGO2 Silent p.T118T 0.17 TCGA-BA-A6DF-01 8 144899920 144899920 C A PUF60 Missense_Mutation p.V284L 0.11 deleterious(0.03) possibly_damaging(0.509) TCGA-BA-A6DF-01 8 145059674 145059674 C T PARP10 Silent p.L193L 0.15 TCGA-BA-A6DF-01 8 75157339 75157339 C A JPH1 Nonsense_Mutation p.E444* 0.17 TCGA-BA-A6DF-01 8 86126124 86126124 C G E2F5 3'UTR 0.14 TCGA-BA-A6DF-01 8 88885685 88885685 C T DCAF4L2 Missense_Mutation p.R172H 0.11 tolerated(0.15) benign(0.004) TCGA-BA-A6DF-01 9 107591253 107591253 T C ABCA1 Missense_Mutation p.I687V 0.33 tolerated(0.12) possibly_damaging(0.699) TCGA-BA-A6DF-01 9 111962564 111962564 G A EPB41L4B Missense_Mutation p.P666L 0.10 tolerated(0.06) benign(0.004) TCGA-BA-A6DF-01 9 124526081 124526081 C T DAB2IP Silent p.A433A 0.33 TCGA-BA-A6DF-01 9 128201270 128201270 G A MAPKAP1 Nonsense_Mutation p.R489* 0.14 TCGA-BA-A6DF-01 9 139412697 139412697 C A NOTCH1 Nonsense_Mutation p.E383* 0.36 TCGA-BA-A6DF-01 9 139904002 139904002 G A ABCA2 Missense_Mutation p.T2242I 0.45 deleterious(0) possibly_damaging(0.848) TCGA-BA-A6DF-01 9 34381510 34381510 C A C9orf24 Intron 0.16 TCGA-BA-A6DF-01 9 71628437 71628437 C T PRKACG Missense_Mutation p.R191H 0.07 tolerated(0.16) benign(0.346) TCGA-BA-A6DF-01 9 88622379 88622379 A C NAA35 Missense_Mutation p.K408T 0.05 deleterious(0.02) benign(0.23) TCGA-BA-A6DF-01 X 105152868 105152868 C A NRK Missense_Mutation p.A413E 0.14 tolerated(0.07) benign(0.043) TCGA-BA-A6DF-01 X 107403883 107403883 T G COL4A6 Silent p.G1446G 0.19 TCGA-BA-A6DF-01 X 111078162 111078162 T C TRPC5 Missense_Mutation p.Y628C 0.03 deleterious(0) probably_damaging(0.995) TCGA-BA-A6DF-01 X 119738074 119738074 C - MCTS1 5'Flank 0.18 TCGA-BA-A6DF-01 X 122799667 122799667 A T THOC2 Silent p.A404A 0.17 TCGA-BA-A6DF-01 X 134481370 134481370 G C ZNF449 Missense_Mutation p.Q109H 0.13 deleterious(0) possibly_damaging(0.77) TCGA-BA-A6DF-01 X 15262664 15262664 G A ASB9 Silent p.L283L 0.04 TCGA-BA-A6DF-01 X 153696270 153696270 C T PLXNA3 Missense_Mutation p.A1249V 0.10 deleterious(0.04) probably_damaging(0.996) TCGA-BA-A6DF-01 X 1584228 1584228 G T P2RY8 3'UTR 0.31 TCGA-BA-A6DF-01 X 19008879 19008879 G A GPR64 3'UTR 0.27 TCGA-BA-A6DF-01 X 22266102 22266102 G A PHEX 3'UTR 0.20 TCGA-BA-A6DF-01 X 23898999 23898999 T - APOO Frame_Shift_Del p.K27Rfs*9 0.20 TCGA-BA-A6DF-01 X 30254196 30254196 A C MAGEB3 Missense_Mutation p.K52T 0.12 tolerated(0.2) benign(0.017) TCGA-BA-A6DF-01 X 31676189 31676189 G A DMD Missense_Mutation p.R2649W 0.16 possibly_damaging(0.835) TCGA-BA-A6DF-01 X 48846087 48846087 G C GRIPAP1 Missense_Mutation p.A269G 0.17 possibly_damaging(0.547) TCGA-BA-A6DF-01 X 50053263 50053263 G A CCNB3 Silent p.E698E 0.19 TCGA-BA-A6DF-01 X 57935934 57935934 G A ZXDA Silent p.C307C 0.14 TCGA-BA-A6DF-01 X 63569920 63569920 C A MTMR8 Missense_Mutation p.V167F 0.15 tolerated(0.07) possibly_damaging(0.824) TCGA-BA-A6DF-01 X 68060232 68060232 C T EFNB1 Missense_Mutation p.T259M 0.12 deleterious(0.01) possibly_damaging(0.475) TCGA-BA-A6DF-01 X 68381791 68381791 C T PJA1 Missense_Mutation p.A431T 0.23 tolerated(0.3) benign(0.006) TCGA-BA-A6DF-01 X 7889801 7889801 C A PNPLA4 Nonsense_Mutation p.E122* 0.22 TCGA-BA-A6DG-01 10 16979755 16979755 C A CUBN Missense_Mutation p.R1921L 0.08 tolerated(0.09) possibly_damaging(0.807) TCGA-BA-A6DG-01 10 28378644 28378644 T C MPP7 Missense_Mutation p.Y360C 0.09 deleterious(0) possibly_damaging(0.906) TCGA-BA-A6DG-01 10 47086822 47086822 A G NPY4R Silent p.K13K 0.04 TCGA-BA-A6DG-01 10 5784212 5784212 A G FAM208B Missense_Mutation p.N827S 0.06 deleterious(0) probably_damaging(0.995) TCGA-BA-A6DG-01 12 63543951 63543951 G A AVPR1A Silent p.G222G 0.08 TCGA-BA-A6DG-01 14 80328223 80328223 C T NRXN3 Silent p.N1034N 0.15 TCGA-BA-A6DG-01 15 49926891 49926891 G T DTWD1 Missense_Mutation p.L189F 0.12 tolerated(0.71) benign(0.006) TCGA-BA-A6DG-01 17 40557364 40557364 G A PTRF Silent p.L172L 0.10 TCGA-BA-A6DG-01 17 7577100 7577100 T C TP53 Missense_Mutation p.R280G 0.13 deleterious(0) probably_damaging(0.947) TCGA-BA-A6DG-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.08 TCGA-BA-A6DG-01 19 46417876 46417876 G A NANOS2 Missense_Mutation p.R26W 0.13 deleterious(0.02) benign(0.005) TCGA-BA-A6DG-01 1 104120352 104120352 A C AMY2B Missense_Mutation p.N411H 0.06 tolerated(0.14) benign(0.015) TCGA-BA-A6DG-01 1 211486428 211486428 C T RCOR3 Intron 0.12 TCGA-BA-A6DG-01 1 22204945 22204945 G A HSPG2 Silent p.G866G 0.13 TCGA-BA-A6DG-01 1 22412991 22412991 G T CDC42 Missense_Mutation p.V80F 0.17 deleterious(0.05) possibly_damaging(0.546) TCGA-BA-A6DG-01 1 55589149 55589149 G A USP24 Missense_Mutation p.T1416M 0.17 deleterious(0.01) possibly_damaging(0.847) TCGA-BA-A6DG-01 1 63836691 63836691 C A ALG6 Missense_Mutation p.L15I 0.06 tolerated(0.39) benign(0.101) TCGA-BA-A6DG-01 2 133402927 133402927 C T GPR39 Silent p.H370H 0.12 TCGA-BA-A6DG-01 2 48897097 48897097 C T STON1-GTF2A1L Silent p.D1109D 0.09 TCGA-BA-A6DG-01 2 61415540 61415540 A G USP34 Silent p.D3446D 0.11 TCGA-BA-A6DG-01 2 99198224 99198224 C A INPP4A Intron 0.20 TCGA-BA-A6DG-01 3 130405201 130405201 G C PIK3R4 Missense_Mutation p.S1110C 0.07 deleterious(0) possibly_damaging(0.779) TCGA-BA-A6DG-01 3 133472485 133472485 A C TF Missense_Mutation p.D88A 0.06 deleterious(0.03) benign(0.175) TCGA-BA-A6DG-01 3 42594851 42594851 G A SEC22C Silent p.H267H 0.06 TCGA-BA-A6DG-01 3 9775848 9775848 G A BRPF1 Silent p.K8K 0.05 TCGA-BA-A6DG-01 4 139135747 139135747 G C SLC7A11 Missense_Mutation p.N261K 0.07 tolerated(0.1) probably_damaging(1) TCGA-BA-A6DG-01 4 47853953 47853953 G A NFXL1 Nonsense_Mutation p.Q810* 0.06 TCGA-BA-A6DG-01 4 8098826 8098826 C T ABLIM2 Missense_Mutation p.R113Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DG-01 5 13914004 13914004 A G DNAH5 Missense_Mutation p.F462L 0.21 benign(0.418) TCGA-BA-A6DG-01 5 140712689 140712689 A C PCDHGA1 Intron 0.10 TCGA-BA-A6DG-01 5 82815556 82815556 C A VCAN Silent p.V477V 0.04 TCGA-BA-A6DG-01 6 3224943 3224943 G A TUBB2B 3'UTR 0.18 TCGA-BA-A6DG-01 7 126173527 126173527 A T GRM8 Missense_Mutation p.F637I 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A6DG-01 9 125274024 125274024 A G OR1J2 3'Flank 0.14 TCGA-BA-A6DG-01 9 125281470 125281470 C T OR1J4 Silent p.L17L 0.08 TCGA-BA-A6DG-01 9 140442090 140442090 C T PNPLA7 Missense_Mutation p.A18T 0.08 tolerated_low_confidence(0.77) benign(0.001) TCGA-BA-A6DG-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.21 TCGA-BA-A6DG-01 9 37486094 37486094 C T POLR1E Missense_Mutation p.P17L 0.20 deleterious(0.02) possibly_damaging(0.48) TCGA-BA-A6DI-01 10 124345706 124345706 G T DMBT1 Silent p.V530V 0.12 TCGA-BA-A6DI-01 10 124358528 124358528 C A DMBT1 Missense_Mutation p.H1065Q 0.13 tolerated(0.35) unknown(0) TCGA-BA-A6DI-01 10 17126399 17126399 C A CUBN Missense_Mutation p.L724F 0.25 tolerated(0.23) possibly_damaging(0.904) TCGA-BA-A6DI-01 10 45652280 45652280 C G RP11-445N18.7 RNA 0.21 TCGA-BA-A6DI-01 10 73453969 73453969 G T CDH23 Missense_Mutation p.A340S 0.23 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DI-01 10 88930360 88930360 T C FAM35A Silent p.L587L 0.24 TCGA-BA-A6DI-01 11 118765167 118765167 C T CXCR5 Missense_Mutation p.T305I 0.10 tolerated(0.24) benign(0.026) TCGA-BA-A6DI-01 11 124440375 124440375 C T OR8A1 Silent p.Y137Y 0.12 TCGA-BA-A6DI-01 11 124857643 124857643 G T CCDC15 Missense_Mutation p.Q507H 0.17 tolerated(0.06) benign(0.062) TCGA-BA-A6DI-01 11 13391307 13391307 G A ARNTL Silent p.K271K 0.05 TCGA-BA-A6DI-01 11 13733566 13733566 C T FAR1 Missense_Mutation p.A287V 0.06 tolerated(0.18) benign(0.053) TCGA-BA-A6DI-01 11 20119158 20119158 A T NAV2 Silent p.L2075L 0.18 TCGA-BA-A6DI-01 11 31454100 31454100 C A IMMP1L Missense_Mutation p.D150Y 0.13 deleterious(0) benign(0.305) TCGA-BA-A6DI-01 11 55433356 55433356 C A OR4C6 Nonsense_Mutation p.C238* 0.13 TCGA-BA-A6DI-01 11 55606535 55606535 T G OR5D16 Missense_Mutation p.F103C 0.17 deleterious(0) probably_damaging(0.91) TCGA-BA-A6DI-01 11 55606580 55606580 C T OR5D16 Missense_Mutation p.A118V 0.18 tolerated(0.06) benign(0.086) TCGA-BA-A6DI-01 11 5664829 5664829 G A TRIM34 Missense_Mutation p.G453S 0.13 deleterious(0.01) probably_damaging(1) TCGA-BA-A6DI-01 11 5701447 5701447 G A TRIM5 5'UTR 0.23 TCGA-BA-A6DI-01 11 92531811 92531811 G C FAT3 Missense_Mutation p.D1878H 0.08 probably_damaging(1) TCGA-BA-A6DI-01 12 101584334 101584334 C G SLC5A8 Missense_Mutation p.G249R 0.06 deleterious(0) probably_damaging(1) TCGA-BA-A6DI-01 12 11461265 11461265 C T PRB4 Missense_Mutation p.A218T 0.21 deleterious_low_confidence(0.04) unknown(0) TCGA-BA-A6DI-01 12 124856695 124856695 C T NCOR2 Missense_Mutation p.E894K 0.22 probably_damaging(0.996) TCGA-BA-A6DI-01 12 21727085 21727085 A C GYS2 Missense_Mutation p.L224R 0.30 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DI-01 12 49440158 49440158 C A KMT2D Nonsense_Mutation p.E1490* 0.17 TCGA-BA-A6DI-01 12 54448820 54448820 T A HOXC4 Missense_Mutation p.M209K 0.12 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DI-01 12 54686719 54686719 G A NFE2 Silent p.N187N 0.15 TCGA-BA-A6DI-01 12 66703543 66703543 C T HELB Nonsense_Mutation p.Q279* 0.19 TCGA-BA-A6DI-01 12 7086862 7086863 - G LPCAT3 Frame_Shift_Ins p.Q363Sfs*87 0.10 TCGA-BA-A6DI-01 12 72335422 72335422 G T TPH2 Missense_Mutation p.R55L 0.13 tolerated(0.22) benign(0) TCGA-BA-A6DI-01 12 85517969 85517969 G A LRRIQ1 Missense_Mutation p.E1227K 0.20 tolerated(0.23) possibly_damaging(0.73) TCGA-BA-A6DI-01 14 101449296 101449296 C T SNORD114-22 RNA 0.27 TCGA-BA-A6DI-01 14 42357125 42357125 C A LRFN5 Missense_Mutation p.L433I 0.32 tolerated(1) benign(0.001) TCGA-BA-A6DI-01 14 59112831 59112831 C A DACT1 Missense_Mutation p.P497Q 0.23 tolerated(0.3) benign(0.427) TCGA-BA-A6DI-01 14 70238211 70238211 T A SRSF5 3'UTR 0.18 TCGA-BA-A6DI-01 14 75567806 75567806 C T NEK9 Missense_Mutation p.V631I 0.27 tolerated(0.06) benign(0.297) TCGA-BA-A6DI-01 15 72668115 72668115 G A HEXA Missense_Mutation p.R67C 0.15 deleterious(0) probably_damaging(1) TCGA-BA-A6DI-01 15 78471001 78471001 G A ACSBG1 Missense_Mutation p.R553C 0.28 tolerated(0.09) probably_damaging(0.946) TCGA-BA-A6DI-01 16 31098884 31098884 G A RP11-196G11.1 Silent p.V147V 0.19 TCGA-BA-A6DI-01 16 32077655 32077655 C A IGHV3OR16-9 Missense_Mutation p.D90E 0.06 deleterious_low_confidence(0.02) benign(0.433) TCGA-BA-A6DI-01 16 58031223 58031223 C T ZNF319 Missense_Mutation p.R316H 0.13 tolerated(0.05) benign(0.016) TCGA-BA-A6DI-01 16 8736373 8736373 G T METTL22 Missense_Mutation p.A321S 0.14 tolerated(0.56) benign(0.019) TCGA-BA-A6DI-01 17 48918253 48918253 G A WFIKKN2 Missense_Mutation p.G535D 0.25 tolerated(1) benign(0.002) TCGA-BA-A6DI-01 17 71427676 71427676 C T SDK2 Missense_Mutation p.G482E 0.11 deleterious(0) probably_damaging(0.968) TCGA-BA-A6DI-01 17 73720804 73720804 C G ITGB4 Missense_Mutation p.S7R 0.16 tolerated_low_confidence(0.11) benign(0.003) TCGA-BA-A6DI-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.16 deleterious(0) probably_damaging(0.995) TCGA-BA-A6DI-01 17 7579546 7579547 - G TP53 Frame_Shift_Ins p.D48Gfs*4 0.15 TCGA-BA-A6DI-01 17 76803592 76803592 C A USP36 Missense_Mutation p.G512W 0.14 deleterious(0.03) benign(0.315) TCGA-BA-A6DI-01 18 21364064 21364064 G C LAMA3 Missense_Mutation p.E516Q 0.15 benign(0.128) TCGA-BA-A6DI-01 18 72229309 72229309 A G CNDP1 Missense_Mutation p.D165G 0.14 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DI-01 19 19153677 19153677 G A ARMC6 Missense_Mutation p.E63K 0.08 deleterious(0.01) benign(0.285) TCGA-BA-A6DI-01 19 20044958 20044958 A T ZNF93 Missense_Mutation p.K398N 0.13 deleterious(0.02) possibly_damaging(0.758) TCGA-BA-A6DI-01 19 37903577 37903577 G A ZNF569 Silent p.P661P 0.06 TCGA-BA-A6DI-01 19 40398375 40398375 G A FCGBP Missense_Mutation p.R2198C 0.04 possibly_damaging(0.898) TCGA-BA-A6DI-01 19 54783717 54783717 C T LILRB2 Missense_Mutation p.R95Q 0.08 tolerated(0.3) benign(0.031) TCGA-BA-A6DI-01 19 5749195 5749195 G A CATSPERD Splice_Site p.X329_splice 0.11 TCGA-BA-A6DI-01 19 58571424 58571424 G A ZNF135 Intron 0.15 TCGA-BA-A6DI-01 1 111661446 111661446 G A DRAM2 Missense_Mutation p.T225I 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DI-01 1 154320941 154320941 C T ATP8B2 Missense_Mutation p.T1107I 0.19 tolerated(0.13) possibly_damaging(0.647) TCGA-BA-A6DI-01 1 155912004 155912004 G A RXFP4 Silent p.A168A 0.16 TCGA-BA-A6DI-01 1 158747425 158747425 T G OR6N2 Translation_Start_Site p.M1? 0.19 deleterious(0.03) probably_damaging(0.989) TCGA-BA-A6DI-01 1 161087821 161087821 G C PFDN2 5'UTR 0.17 TCGA-BA-A6DI-01 1 183529314 183529314 A G NCF2 Missense_Mutation p.V462A 0.17 deleterious(0) possibly_damaging(0.876) TCGA-BA-A6DI-01 1 196309639 196309639 C A KCNT2 Missense_Mutation p.G539C 0.19 deleterious(0) probably_damaging(1) TCGA-BA-A6DI-01 1 2125497 2125497 C A C1orf86 Silent p.T46T 0.12 TCGA-BA-A6DI-01 1 229462821 229462821 T C CCSAP Intron 0.20 TCGA-BA-A6DI-01 1 26688211 26688211 C - ZNF683 Frame_Shift_Del p.A484Qfs*4 0.29 TCGA-BA-A6DI-01 1 27706347 27706347 C T CD164L2 3'UTR 0.31 TCGA-BA-A6DI-01 1 60103901 60103901 T A FGGY Missense_Mutation p.C359S 0.28 tolerated(0.91) benign(0.004) TCGA-BA-A6DI-01 20 29965130 29965130 C T DEFB118 3'Flank 0.16 TCGA-BA-A6DI-01 20 49209009 49209009 G T FAM65C Missense_Mutation p.Q813K 0.21 tolerated(0.14) benign(0.021) TCGA-BA-A6DI-01 20 62369957 62369957 G A LIME1 Missense_Mutation p.V198I 0.15 tolerated(1) benign(0.005) TCGA-BA-A6DI-01 21 44324335 44324335 G T NDUFV3 Nonsense_Mutation p.E405* 0.23 TCGA-BA-A6DI-01 22 23438130 23438130 G T GNAZ Missense_Mutation p.R83L 0.16 deleterious(0.03) benign(0.147) TCGA-BA-A6DI-01 22 24616059 24616059 C A GGT5 Missense_Mutation p.R548L 0.08 tolerated(1) benign(0.398) TCGA-BA-A6DI-01 22 29138288 29138288 C T HSCB Missense_Mutation p.P69S 0.12 tolerated(0.19) benign(0.002) TCGA-BA-A6DI-01 2 135744393 135744393 C T MAP3K19 Silent p.T683T 0.10 TCGA-BA-A6DI-01 2 168108369 168108369 A T XIRP2 Missense_Mutation p.R3489S 0.09 benign(0.094) TCGA-BA-A6DI-01 2 21225795 21225795 G A APOB Missense_Mutation p.L4167F 0.08 benign(0.002) TCGA-BA-A6DI-01 2 219500994 219500994 A G PLCD4 Silent p.L687L 0.16 TCGA-BA-A6DI-01 2 220045437 220045437 G T FAM134A Nonsense_Mutation p.G201* 0.12 TCGA-BA-A6DI-01 2 39237832 39237832 T C SOS1 Silent p.P801P 0.08 TCGA-BA-A6DI-01 2 49381411 49381411 A T FSHR Missense_Mutation p.I49N 0.16 tolerated(0.47) benign(0.002) TCGA-BA-A6DI-01 2 60679703 60679703 A C BCL11A 3'Flank 0.09 TCGA-BA-A6DI-01 2 61441266 61441266 G C USP34 Missense_Mutation p.Q2871E 0.21 deleterious(0) possibly_damaging(0.759) TCGA-BA-A6DI-01 2 99169316 99169316 G A INPP4A Missense_Mutation p.A416T 0.13 tolerated(0.14) possibly_damaging(0.701) TCGA-BA-A6DI-01 3 113955277 113955277 C A ZNF80 Missense_Mutation p.K215N 0.09 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DI-01 3 120998674 120998674 G A STXBP5L Missense_Mutation p.G661R 0.25 deleterious(0) probably_damaging(0.95) TCGA-BA-A6DI-01 3 134265027 134265027 C T CEP63 Missense_Mutation p.L276F 0.28 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DI-01 3 147114093 147114093 G T ZIC4 Missense_Mutation p.F128L 0.10 tolerated(0.08) benign(0.006) TCGA-BA-A6DI-01 3 158983040 158983040 A T IQCJ Missense_Mutation p.I110F 0.12 tolerated_low_confidence(0.22) benign(0.005) TCGA-BA-A6DI-01 3 196842858 196842858 G C DLG1 Missense_Mutation p.I494M 0.10 deleterious(0) probably_damaging(0.991) TCGA-BA-A6DI-01 3 39226144 39226144 C A XIRP1 Missense_Mutation p.G1598V 0.17 tolerated(0.44) benign(0.08) TCGA-BA-A6DI-01 3 87302902 87302902 C T CHMP2B Missense_Mutation p.A191V 0.15 tolerated(0.16) benign(0.057) TCGA-BA-A6DI-01 4 187542357 187542357 G A FAT1 Nonsense_Mutation p.R1795* 0.21 TCGA-BA-A6DI-01 4 2831401 2831401 G A SH3BP2 Silent p.R313R 0.18 TCGA-BA-A6DI-01 4 3182292 3182292 A G HTT Missense_Mutation p.T1555A 0.17 benign(0.001) TCGA-BA-A6DI-01 4 57796372 57796372 C T REST Nonsense_Mutation p.Q450* 0.28 TCGA-BA-A6DI-01 4 77700111 77700111 C A SHROOM3 Missense_Mutation p.F1924L 0.31 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DI-01 5 156390192 156390192 G A TIMD4 Silent p.L6L 0.14 TCGA-BA-A6DI-01 5 23522481 23522481 G T PRDM9 Nonsense_Mutation p.E193* 0.17 TCGA-BA-A6DI-01 5 41038885 41038885 G C MROH2B Missense_Mutation p.Q723E 0.20 tolerated(0.59) benign(0.005) TCGA-BA-A6DI-01 5 491977 491977 C T SLC9A3 Missense_Mutation p.G141R 0.11 deleterious(0) probably_damaging(1) TCGA-BA-A6DI-01 5 54662563 54662563 A G SKIV2L2 Missense_Mutation p.D557G 0.17 deleterious(0) probably_damaging(0.996) TCGA-BA-A6DI-01 5 78294107 78294107 G A DMGDH Missense_Mutation p.T800M 0.20 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DI-01 6 121427176 121427176 G T TBC1D32 Missense_Mutation p.P1153Q 0.09 deleterious(0) probably_damaging(0.972) TCGA-BA-A6DI-01 6 158923680 158923680 G A TULP4 Silent p.T995T 0.08 TCGA-BA-A6DI-01 6 32798443 32798443 T C TAP2 Silent p.Q471Q 0.13 TCGA-BA-A6DI-01 6 44271136 44271136 G A AARS2 Missense_Mutation p.R678W 0.06 deleterious(0) possibly_damaging(0.513) TCGA-BA-A6DI-01 6 80910677 80910677 A G BCKDHB Missense_Mutation p.N257D 0.11 tolerated(0.27) benign(0.004) TCGA-BA-A6DI-01 7 103417017 103417017 C T RELN Silent p.L177L 0.10 TCGA-BA-A6DI-01 7 20706380 20706380 A T ABCB5 Intron 0.14 TCGA-BA-A6DI-01 7 56127965 56127965 G A CCT6A Missense_Mutation p.E357K 0.11 deleterious(0.03) possibly_damaging(0.508) TCGA-BA-A6DI-01 8 103338797 103338797 G A UBR5 Missense_Mutation p.P526S 0.10 tolerated(0.61) probably_damaging(0.953) TCGA-BA-A6DI-01 8 140743397 140743397 G T TRAPPC9 Silent p.I1216I 0.16 TCGA-BA-A6DI-01 8 141874446 141874446 C T PTK2 Missense_Mutation p.E139K 0.32 tolerated(0.46) benign(0.048) TCGA-BA-A6DI-01 8 26366088 26366088 C T PNMA2 Missense_Mutation p.A62T 0.21 tolerated(0.2) benign(0.001) TCGA-BA-A6DI-01 8 35648138 35648138 G T UNC5D 3'UTR 0.39 TCGA-BA-A6DI-01 8 42179463 42179463 G T IKBKB Missense_Mutation p.D580Y 0.19 deleterious(0.01) probably_damaging(0.959) TCGA-BA-A6DI-01 8 55539400 55539400 A G RP1 Silent p.L986L 0.25 TCGA-BA-A6DI-01 9 117848674 117848674 G A TNC Missense_Mutation p.R446W 0.06 deleterious(0) probably_damaging(0.993) TCGA-BA-A6DI-01 9 15447132 15447132 G T SNAPC3 Missense_Mutation p.G208C 0.06 deleterious(0) probably_damaging(1) TCGA-BA-A6DI-01 9 17579253 17579253 G A SH3GL2 Missense_Mutation p.G5S 0.20 deleterious(0.01) benign(0.059) TCGA-BA-A6DI-01 9 71503990 71503990 A G PIP5K1B Missense_Mutation p.K138E 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-BA-A6DI-01 9 84199098 84199098 A G TLE1 3'UTR 0.30 TCGA-BA-A6DI-01 X 24091373 24091373 C T EIF2S3 Missense_Mutation p.H450Y 0.31 deleterious(0) benign(0.066) TCGA-BA-A6DI-01 X 53114820 53114820 A T TSPYL2 Missense_Mutation p.R416W 0.30 deleterious(0.01) possibly_damaging(0.844) TCGA-BA-A6DI-01 X 53246350 53246350 C G KDM5C Missense_Mutation p.R211P 0.50 deleterious(0.01) probably_damaging(0.993) TCGA-BA-A6DJ-01 10 101829594 101829594 C T CPN1 Silent p.R151R 0.27 TCGA-BA-A6DJ-01 10 117704258 117704258 C T ATRNL1 Missense_Mutation p.H1370Y 0.23 tolerated(0.08) benign(0.062) TCGA-BA-A6DJ-01 10 1779362 1779362 G A ADARB2 5'UTR 0.28 TCGA-BA-A6DJ-01 10 34671826 34671826 G A PARD3 Silent p.A347A 0.24 TCGA-BA-A6DJ-01 10 408579 408579 G T DIP2C Missense_Mutation p.A882E 0.19 tolerated(0.09) benign(0.274) TCGA-BA-A6DJ-01 10 5790579 5790579 C T FAM208B Missense_Mutation p.T1732M 0.31 tolerated(0.53) benign(0.004) TCGA-BA-A6DJ-01 10 69991147 69991147 C T ATOH7 Silent p.L96L 0.14 TCGA-BA-A6DJ-01 10 73039771 73039771 C T UNC5B Silent p.H91H 0.24 TCGA-BA-A6DJ-01 10 74620268 74620268 T C MCU Missense_Mutation p.V160A 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-BA-A6DJ-01 10 74831832 74831832 C A P4HA1 Nonsense_Mutation p.E94* 0.20 TCGA-BA-A6DJ-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.31 TCGA-BA-A6DJ-01 10 98923207 98923207 G T ARHGAP19-SLIT1 Nonsense_Mutation p.C516* 0.27 TCGA-BA-A6DJ-01 11 102564693 102564693 G A MMP27 Silent p.A379A 0.30 TCGA-BA-A6DJ-01 11 113851964 113851964 T G HTR3A Missense_Mutation p.F108V 0.27 deleterious(0) possibly_damaging(0.905) TCGA-BA-A6DJ-01 11 118235857 118235857 C G UBE4A Missense_Mutation p.S21C 0.23 tolerated(0.11) probably_damaging(0.983) TCGA-BA-A6DJ-01 11 118770865 118770865 G A BCL9L Missense_Mutation p.P1056L 0.21 probably_damaging(0.998) TCGA-BA-A6DJ-01 11 120300418 120300418 C T ARHGEF12 Intron 0.27 TCGA-BA-A6DJ-01 11 20648345 20648345 G A SLC6A5 Nonsense_Mutation p.W451* 0.22 TCGA-BA-A6DJ-01 11 33076194 33076194 C T TCP11L1 Silent p.V73V 0.26 TCGA-BA-A6DJ-01 11 33373367 33373367 C T HIPK3 Silent p.A1007A 0.18 TCGA-BA-A6DJ-01 11 46567252 46567252 G C AMBRA1 Silent p.L151L 0.21 TCGA-BA-A6DJ-01 11 533874 533874 T A HRAS Missense_Mutation p.Q61L 0.27 deleterious(0) possibly_damaging(0.476) TCGA-BA-A6DJ-01 11 5373015 5373015 G C OR51B6 Missense_Mutation p.G93A 0.34 tolerated(0.26) benign(0.003) TCGA-BA-A6DJ-01 11 55563543 55563543 C G OR5D14 Missense_Mutation p.S171C 0.04 tolerated(1) benign(0.001) TCGA-BA-A6DJ-01 11 60695323 60695323 C G TMEM132A Missense_Mutation p.R176G 0.29 deleterious(0) possibly_damaging(0.905) TCGA-BA-A6DJ-01 11 62398117 62398117 G C GANAB Missense_Mutation p.Q470E 0.14 deleterious(0.03) benign(0.001) TCGA-BA-A6DJ-01 11 66102902 66102902 C G RIN1 Missense_Mutation p.E175Q 0.21 deleterious(0) possibly_damaging(0.669) TCGA-BA-A6DJ-01 11 66325221 66325221 G A CTD-3074O7.2 3'Flank 0.21 TCGA-BA-A6DJ-01 11 69466022 69466022 C T CCND1 Missense_Mutation p.P287L 0.25 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 11 72005141 72005141 G C CLPB Silent p.L600L 0.21 TCGA-BA-A6DJ-01 11 77091019 77091019 C G PAK1 Missense_Mutation p.E71Q 0.06 deleterious(0.04) possibly_damaging(0.457) TCGA-BA-A6DJ-01 12 102158732 102158732 G A GNPTAB Missense_Mutation p.P655S 0.26 tolerated(0.43) benign(0.005) TCGA-BA-A6DJ-01 12 1023689 1023689 G C RAD52 Missense_Mutation p.P292R 0.26 tolerated(0.13) benign(0.024) TCGA-BA-A6DJ-01 12 120654629 120654629 G A PXN Intron 0.32 TCGA-BA-A6DJ-01 12 121098056 121098056 G A CABP1 Missense_Mutation p.R248Q 0.22 deleterious(0.05) probably_damaging(0.922) TCGA-BA-A6DJ-01 12 121666390 121666390 C G P2RX4 Missense_Mutation p.I209M 0.13 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 12 130897293 130897293 C T RIMBP2 Missense_Mutation p.E898K 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BA-A6DJ-01 12 132529947 132529947 C T EP400 Silent p.L2290L 0.31 TCGA-BA-A6DJ-01 12 3103948 3103948 G A TEAD4 Missense_Mutation p.G6S 0.25 deleterious_low_confidence(0.04) benign(0.016) TCGA-BA-A6DJ-01 12 52713011 52713011 C T KRT83 Silent p.V174V 0.24 TCGA-BA-A6DJ-01 12 53227877 53227877 G C KRT79 Silent p.G56G 0.22 TCGA-BA-A6DJ-01 12 56651665 56651665 C G ANKRD52 Missense_Mutation p.D20H 0.08 tolerated(0.13) possibly_damaging(0.694) TCGA-BA-A6DJ-01 12 6219670 6219670 A G VWF Silent p.Y134Y 0.21 TCGA-BA-A6DJ-01 12 6753358 6753358 C T ACRBP Missense_Mutation p.E297K 0.36 tolerated(0.21) benign(0.285) TCGA-BA-A6DJ-01 12 67706499 67706499 G A CAND1 Silent p.L1194L 0.24 TCGA-BA-A6DJ-01 12 72029315 72029315 C T ZFC3H1 Missense_Mutation p.D716N 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-BA-A6DJ-01 12 7244099 7244099 G A C1R Silent p.F59F 0.39 TCGA-BA-A6DJ-01 12 76453586 76453586 C A NAP1L1 Nonsense_Mutation p.E141* 0.27 TCGA-BA-A6DJ-01 12 78513418 78513418 G T NAV3 Missense_Mutation p.G1148C 0.24 deleterious(0) probably_damaging(0.976) TCGA-BA-A6DJ-01 13 20220907 20220907 A G MPHOSPH8 Missense_Mutation p.K232E 0.29 deleterious_low_confidence(0.01) benign(0.345) TCGA-BA-A6DJ-01 13 36700207 36700207 C T DCLK1 Missense_Mutation p.R23Q 0.34 tolerated(0.05) unknown(0) TCGA-BA-A6DJ-01 13 60498986 60498986 T C DIAPH3 Missense_Mutation p.D698G 0.22 tolerated(0.3) benign(0.002) TCGA-BA-A6DJ-01 13 78171683 78171683 A G SCEL Silent p.E252E 0.31 TCGA-BA-A6DJ-01 13 92380902 92380902 G A GPC5 Silent p.T379T 0.27 TCGA-BA-A6DJ-01 14 102028295 102028295 C T DIO3 Silent p.Y154Y 0.25 TCGA-BA-A6DJ-01 14 106321164 106321164 C T IGHM Silent p.E275E 0.33 TCGA-BA-A6DJ-01 14 21624144 21624144 C G OR5AU1 Missense_Mutation p.R14T 0.23 deleterious_low_confidence(0) benign(0) TCGA-BA-A6DJ-01 14 24036583 24036583 C T AP1G2 5'UTR 0.25 TCGA-BA-A6DJ-01 14 33293223 33293223 G A AKAP6 Silent p.S2068S 0.32 TCGA-BA-A6DJ-01 14 51230664 51230664 C G NIN Missense_Mutation p.D552H 0.27 deleterious(0) probably_damaging(0.934) TCGA-BA-A6DJ-01 14 66975165 66975165 C T GPHN 5'UTR 0.06 TCGA-BA-A6DJ-01 14 70418920 70418920 C A SMOC1 Silent p.I55I 0.30 TCGA-BA-A6DJ-01 14 75264827 75264827 C G YLPM1 Missense_Mutation p.Q943E 0.36 benign(0.424) TCGA-BA-A6DJ-01 14 79434581 79434581 C G NRXN3 Missense_Mutation p.R639G 0.32 deleterious(0) possibly_damaging(0.855) TCGA-BA-A6DJ-01 14 92572896 92572896 T C ATXN3 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.924) TCGA-BA-A6DJ-01 14 96730784 96730784 C T BDKRB1 Silent p.L255L 0.32 TCGA-BA-A6DJ-01 15 100537776 100537776 C A ADAMTS17 Missense_Mutation p.W870C 0.35 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DJ-01 15 25463797 25463797 G C SNORD115-27 5'Flank 0.24 TCGA-BA-A6DJ-01 15 45003737 45003737 G A B2M 5'UTR 0.19 TCGA-BA-A6DJ-01 15 45668818 45668818 G A GATM Missense_Mutation p.P90L 0.26 deleterious(0.02) benign(0.347) TCGA-BA-A6DJ-01 15 63922762 63922762 C T HERC1 Missense_Mutation p.G4290E 0.27 probably_damaging(1) TCGA-BA-A6DJ-01 15 65680850 65680850 C G IGDCC4 Missense_Mutation p.E928Q 0.28 tolerated(0.18) probably_damaging(0.925) TCGA-BA-A6DJ-01 15 69733177 69733177 G A KIF23 Missense_Mutation p.R713H 0.37 deleterious(0.01) benign(0.011) TCGA-BA-A6DJ-01 15 75015200 75015200 G C CYP1A1 Missense_Mutation p.S80C 0.23 tolerated(0.21) benign(0.008) TCGA-BA-A6DJ-01 15 80191317 80191317 G C ST20 Missense_Mutation p.L66V 0.22 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-BA-A6DJ-01 15 90378779 90378779 T G C15orf38-AP3S2 Missense_Mutation p.I385L 0.29 tolerated_low_confidence(0.09) possibly_damaging(0.456) TCGA-BA-A6DJ-01 16 12145726 12145726 G C SNX29 Silent p.R257R 0.26 TCGA-BA-A6DJ-01 16 1837974 1837974 G A NUBP2 Silent p.L174L 0.21 TCGA-BA-A6DJ-01 16 30615770 30615770 G A ZNF689 Nonsense_Mutation p.Q440* 0.23 TCGA-BA-A6DJ-01 16 31501731 31501731 G T SLC5A2 Nonsense_Mutation p.E632* 0.37 TCGA-BA-A6DJ-01 16 3168975 3168975 G A ZNF205 Missense_Mutation p.R185Q 0.25 tolerated(0.39) benign(0.005) TCGA-BA-A6DJ-01 16 56904069 56904069 C T SLC12A3 Silent p.L221L 0.25 TCGA-BA-A6DJ-01 16 58589720 58589720 G A CNOT1 Missense_Mutation p.H858Y 0.24 deleterious(0.01) benign(0.232) TCGA-BA-A6DJ-01 16 74972117 74972117 G A WDR59 Silent p.I194I 0.18 TCGA-BA-A6DJ-01 16 78062034 78062034 A G CLEC3A Missense_Mutation p.E58G 0.31 tolerated(0.06) possibly_damaging(0.487) TCGA-BA-A6DJ-01 16 81740626 81740626 G A CMIP Silent p.K735K 0.15 TCGA-BA-A6DJ-01 16 82033179 82033179 C T SDR42E1 Missense_Mutation p.R240K 0.04 tolerated(0.52) benign(0.002) TCGA-BA-A6DJ-01 16 823222 823222 C A MSLNL Silent p.L682L 0.04 TCGA-BA-A6DJ-01 16 84030833 84030833 G T NECAB2 Missense_Mutation p.D270Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DJ-01 17 19283202 19283202 A G MAPK7 Missense_Mutation p.I114V 0.28 tolerated(0.32) benign(0.085) TCGA-BA-A6DJ-01 17 20921341 20921341 C A USP22 Missense_Mutation p.D202Y 0.26 deleterious(0) probably_damaging(0.992) TCGA-BA-A6DJ-01 17 2275527 2275527 G A SGSM2 Missense_Mutation p.V541M 0.25 deleterious(0.02) benign(0.084) TCGA-BA-A6DJ-01 17 27010070 27010070 G C SUPT6H Missense_Mutation p.R613T 0.31 deleterious(0) possibly_damaging(0.477) TCGA-BA-A6DJ-01 17 3181557 3181559 TGA - OR3A2 In_Frame_Del p.I224del 0.27 TCGA-BA-A6DJ-01 17 33932734 33932734 C G AP2B1 Missense_Mutation p.P52A 0.17 deleterious(0.03) benign(0.165) TCGA-BA-A6DJ-01 17 3489147 3489147 C T SHPK Missense_Mutation p.R433H 0.20 tolerated(0.58) benign(0.075) TCGA-BA-A6DJ-01 17 37235397 37235397 C T PLXDC1 Missense_Mutation p.R337H 0.18 deleterious(0) probably_damaging(0.985) TCGA-BA-A6DJ-01 17 40693145 40693146 CA - NAGLU Frame_Shift_Del p.F314Lfs*2 0.28 TCGA-BA-A6DJ-01 17 42266425 42266425 C G TMUB2 Missense_Mutation p.S24C 0.35 tolerated(0.15) benign(0.008) TCGA-BA-A6DJ-01 17 42266824 42266824 C T TMUB2 Missense_Mutation p.A157V 0.22 tolerated(0.46) benign(0.002) TCGA-BA-A6DJ-01 17 42266848 42266848 C T TMUB2 Missense_Mutation p.T165I 0.22 tolerated(0.12) benign(0.003) TCGA-BA-A6DJ-01 17 42268014 42268014 C T TMUB2 Missense_Mutation p.P250S 0.26 tolerated(0.32) benign(0.004) TCGA-BA-A6DJ-01 17 42268085 42268085 C T TMUB2 Silent p.L273L 0.24 TCGA-BA-A6DJ-01 17 5238511 5238511 C T RABEP1 Missense_Mutation p.L134F 0.24 tolerated(0.72) benign(0.255) TCGA-BA-A6DJ-01 17 57955640 57955640 G C TUBD1 Nonsense_Mutation p.S198* 0.22 TCGA-BA-A6DJ-01 17 57958381 57958382 - A TUBD1 Frame_Shift_Ins p.I138Hfs*42 0.19 TCGA-BA-A6DJ-01 17 57958466 57958466 G A TUBD1 Missense_Mutation p.S109F 0.25 tolerated(0.32) benign(0.098) TCGA-BA-A6DJ-01 17 58013586 58013586 G C RPS6KB1 Missense_Mutation p.R330T 0.23 deleterious(0) probably_damaging(0.976) TCGA-BA-A6DJ-01 17 58740643 58740643 A - PPM1D Frame_Shift_Del p.T517Lfs*5 0.20 TCGA-BA-A6DJ-01 17 7017565 7017565 G A ASGR2 5'UTR 0.36 TCGA-BA-A6DJ-01 17 7216583 7216583 G C GPS2 Missense_Mutation p.S251C 0.26 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-BA-A6DJ-01 17 7216782 7216782 G A GPS2 Missense_Mutation p.S214L 0.23 deleterious(0) possibly_damaging(0.776) TCGA-BA-A6DJ-01 17 7218340 7218340 G C GPS2 Missense_Mutation p.S11C 0.27 deleterious(0) possibly_damaging(0.843) TCGA-BA-A6DJ-01 17 77758764 77758764 G A CBX2 Missense_Mutation p.V508I 0.30 deleterious(0) probably_damaging(0.996) TCGA-BA-A6DJ-01 17 78184371 78184371 C T SGSH Missense_Mutation p.M463I 0.20 tolerated(0.17) benign(0.001) TCGA-BA-A6DJ-01 17 8020224 8020224 G A ALOXE3 Silent p.Y206Y 0.36 TCGA-BA-A6DJ-01 18 19762952 19762952 C G GATA6 Nonsense_Mutation p.S523* 0.21 TCGA-BA-A6DJ-01 18 46385781 46385781 G A CTIF Missense_Mutation p.A552T 0.28 tolerated(0.08) benign(0.366) TCGA-BA-A6DJ-01 18 67860551 67860551 C T RTTN Missense_Mutation p.G327D 0.24 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 18 76754481 76754481 G A SALL3 Silent p.P830P 0.26 TCGA-BA-A6DJ-01 18 77895275 77895275 C T ADNP2 Missense_Mutation p.P660L 0.33 deleterious(0) possibly_damaging(0.733) TCGA-BA-A6DJ-01 18 8088840 8088840 C A PTPRM Missense_Mutation p.A616E 0.27 deleterious(0) probably_damaging(0.996) TCGA-BA-A6DJ-01 18 9211769 9211769 G A ANKRD12 Silent p.V213V 0.24 TCGA-BA-A6DJ-01 19 10663612 10663612 G A ATG4D Missense_Mutation p.E432K 0.04 tolerated(0.13) probably_damaging(0.997) TCGA-BA-A6DJ-01 19 1235876 1235876 C T C19orf26 Silent p.V49V 0.20 TCGA-BA-A6DJ-01 19 1585084 1585084 G A MBD3 Silent p.R80R 0.17 TCGA-BA-A6DJ-01 19 18976359 18976379 CTGTCTTTCAGGGCGAGGCAC - UPF1 Splice_Site p.X1007_splice 0.29 TCGA-BA-A6DJ-01 19 2112870 2112870 C T AP3D1 Missense_Mutation p.D926N 0.19 tolerated_low_confidence(0.39) possibly_damaging(0.908) TCGA-BA-A6DJ-01 19 22155264 22155264 C T ZNF208 Missense_Mutation p.E858K 0.04 tolerated(0.06) unknown(0) TCGA-BA-A6DJ-01 19 36216480 36216480 G A KMT2B Missense_Mutation p.R1248H 0.27 probably_damaging(0.964) TCGA-BA-A6DJ-01 19 36430454 36430454 G A LRFN3 Missense_Mutation p.V43M 0.25 tolerated(0.16) benign(0.266) TCGA-BA-A6DJ-01 19 39090609 39090609 G A MAP4K1 Missense_Mutation p.T542I 0.22 deleterious(0) probably_damaging(0.914) TCGA-BA-A6DJ-01 19 39517588 39517588 G A FBXO27 Silent p.D210D 0.31 TCGA-BA-A6DJ-01 19 42911576 42911576 C T LIPE Silent p.R629R 0.24 TCGA-BA-A6DJ-01 19 46330777 46330777 C T SYMPK Silent p.E724E 0.21 TCGA-BA-A6DJ-01 19 47656163 47656163 G C SAE1 Silent p.L131L 0.04 TCGA-BA-A6DJ-01 19 52772874 52772874 A C ZNF766 Missense_Mutation p.Q3P 0.22 tolerated_low_confidence(0.16) unknown(0) TCGA-BA-A6DJ-01 19 53352349 53352349 C T ZNF468 Missense_Mutation p.V45I 0.14 tolerated(0.07) possibly_damaging(0.751) TCGA-BA-A6DJ-01 19 53643891 53643891 G A ZNF347 Silent p.I731I 0.24 TCGA-BA-A6DJ-01 19 55752345 55752345 C T PPP6R1 Missense_Mutation p.E422K 0.16 tolerated(0.05) benign(0.328) TCGA-BA-A6DJ-01 19 56206609 56206609 C G EPN1 Missense_Mutation p.P626A 0.24 deleterious(0.02) benign(0.061) TCGA-BA-A6DJ-01 19 5622611 5622611 C T SAFB2 Missense_Mutation p.R39Q 0.12 deleterious(0) probably_damaging(0.989) TCGA-BA-A6DJ-01 19 5664425 5664425 C G SAFB Nonsense_Mutation p.S770* 0.27 TCGA-BA-A6DJ-01 19 5776180 5776180 G A CATSPERD Silent p.V650V 0.33 TCGA-BA-A6DJ-01 19 58489953 58489953 G A ZNF606 Missense_Mutation p.R699W 0.21 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DJ-01 19 58601584 58601584 C T ZSCAN18 Silent p.P73P 0.29 TCGA-BA-A6DJ-01 19 8841624 8841624 C T OR2Z1 Silent p.I78I 0.24 TCGA-BA-A6DJ-01 1 101194799 101194799 G A VCAM1 Silent p.L355L 0.20 TCGA-BA-A6DJ-01 1 101467118 101467118 G A DPH5 Missense_Mutation p.S132F 0.22 deleterious(0) benign(0.229) TCGA-BA-A6DJ-01 1 103544224 103544224 C T COL11A1 Missense_Mutation p.A160T 0.22 probably_damaging(0.997) TCGA-BA-A6DJ-01 1 1146804 1146804 C G TNFRSF4 3'UTR 0.44 TCGA-BA-A6DJ-01 1 115110828 115110828 G A BCAS2 Nonsense_Mutation p.Q201* 0.26 TCGA-BA-A6DJ-01 1 116519207 116519207 G C SLC22A15 5'UTR 0.26 TCGA-BA-A6DJ-01 1 11807587 11807587 C T AGTRAP Silent p.I51I 0.28 TCGA-BA-A6DJ-01 1 12017008 12017008 G A PLOD1 Silent p.V226V 0.31 TCGA-BA-A6DJ-01 1 144952169 144952169 C A PDE4DIP Intron 0.10 TCGA-BA-A6DJ-01 1 152287145 152287145 C G FLG Missense_Mutation p.E73Q 0.23 benign(0.441) TCGA-BA-A6DJ-01 1 154574693 154574693 C T ADAR Missense_Mutation p.R142K 0.26 tolerated(0.11) benign(0.02) TCGA-BA-A6DJ-01 1 155167839 155167839 G T THBS3 Silent p.L749L 0.28 TCGA-BA-A6DJ-01 1 155227141 155227141 G A SCAMP3 Silent p.F238F 0.22 TCGA-BA-A6DJ-01 1 156520136 156520136 C T IQGAP3 Missense_Mutation p.G581E 0.31 tolerated(1) benign(0.021) TCGA-BA-A6DJ-01 1 156693183 156693183 G C ISG20L2 Silent p.V340V 0.25 TCGA-BA-A6DJ-01 1 158613167 158613167 C T SPTA1 Missense_Mutation p.D1463N 0.26 tolerated(0.54) benign(0.032) TCGA-BA-A6DJ-01 1 158747097 158747097 G A OR6N2 Missense_Mutation p.S110F 0.20 deleterious(0) possibly_damaging(0.845) TCGA-BA-A6DJ-01 1 160134055 160134055 C T ATP1A4 Silent p.I296I 0.05 TCGA-BA-A6DJ-01 1 16719858 16719858 C T SZRD1 Silent p.S79S 0.30 TCGA-BA-A6DJ-01 1 181759648 181759651 ATGG - CACNA1E Frame_Shift_Del p.M1952Tfs*21 0.21 TCGA-BA-A6DJ-01 1 193029009 193029009 G C UCHL5 5'Flank 0.42 TCGA-BA-A6DJ-01 1 213405586 213405586 C A RPS6KC1 Missense_Mutation p.Q405K 0.19 deleterious(0) possibly_damaging(0.571) TCGA-BA-A6DJ-01 1 221053273 221053273 C T HLX Missense_Mutation p.A25V 0.28 deleterious_low_confidence(0) benign(0.054) TCGA-BA-A6DJ-01 1 223987650 223987650 C T TP53BP2 Missense_Mutation p.G479D 0.15 deleterious(0.01) probably_damaging(1) TCGA-BA-A6DJ-01 1 224492497 224492497 C G NVL Missense_Mutation p.E256Q 0.05 deleterious(0.05) benign(0.08) TCGA-BA-A6DJ-01 1 226032238 226032238 C G EPHX1 Silent p.L360L 0.04 TCGA-BA-A6DJ-01 1 229738001 229738001 C G TAF5L Missense_Mutation p.E305Q 0.26 tolerated(0.57) benign(0.009) TCGA-BA-A6DJ-01 1 22973835 22973835 C A C1QC Silent p.P99P 0.23 TCGA-BA-A6DJ-01 1 235335980 235335980 G A ARID4B Missense_Mutation p.A1255V 0.16 deleterious(0) probably_damaging(0.993) TCGA-BA-A6DJ-01 1 237777403 237777403 C T RYR2 Missense_Mutation p.R1659W 0.24 probably_damaging(0.919) TCGA-BA-A6DJ-01 1 247014083 247014083 C G AHCTF1 Missense_Mutation p.R1751T 0.22 tolerated(0.11) benign(0.161) TCGA-BA-A6DJ-01 1 26387823 26387823 C T TRIM63 Missense_Mutation p.R112Q 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-BA-A6DJ-01 1 26688651 26688651 C T ZNF683 Intron 0.17 TCGA-BA-A6DJ-01 1 32843848 32843848 G A BSDC1 Missense_Mutation p.R206W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DJ-01 1 34663145 34663145 G A C1orf94 Missense_Mutation p.A214T 0.21 tolerated(0.09) benign(0.036) TCGA-BA-A6DJ-01 1 40434075 40434075 C T MFSD2A Silent p.I439I 0.28 TCGA-BA-A6DJ-01 1 52927235 52927235 C G ZCCHC11 Missense_Mutation p.E1061Q 0.43 tolerated(0.28) probably_damaging(0.999) TCGA-BA-A6DJ-01 1 53287268 53287268 C T ZYG11B Silent p.P734P 0.24 TCGA-BA-A6DJ-01 1 55509581 55509582 AG - PCSK9 Frame_Shift_Del p.E92Afs*78 0.20 TCGA-BA-A6DJ-01 1 72241958 72241958 G C NEGR1 Missense_Mutation p.I144M 0.07 deleterious(0) probably_damaging(0.952) TCGA-BA-A6DJ-01 1 86896618 86896618 C G CLCA2 Missense_Mutation p.F183L 0.30 deleterious(0.03) benign(0.094) TCGA-BA-A6DJ-01 1 93648935 93648935 C T CCDC18 Missense_Mutation p.S60L 0.25 tolerated_low_confidence(0.14) benign(0.005) TCGA-BA-A6DJ-01 1 94027950 94027950 C G BCAR3 Missense_Mutation p.E776Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DJ-01 20 10625900 10625900 G A JAG1 Silent p.D706D 0.20 TCGA-BA-A6DJ-01 20 19955493 19955493 T C RIN2 Missense_Mutation p.L324P 0.27 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 20 2776783 2776783 C T CPXM1 Missense_Mutation p.E423K 0.05 tolerated(0.14) benign(0.34) TCGA-BA-A6DJ-01 20 33330812 33330812 T A NCOA6 Missense_Mutation p.Q1083L 0.30 possibly_damaging(0.694) TCGA-BA-A6DJ-01 20 35443662 35443662 G A SOGA1 Missense_Mutation p.T728M 0.25 tolerated(0.52) benign(0.016) TCGA-BA-A6DJ-01 20 54824313 54824313 C T MC3R Silent p.I138I 0.32 TCGA-BA-A6DJ-01 21 11015016 11015016 G A TPTE RNA 0.24 TCGA-BA-A6DJ-01 21 47648623 47648623 G C LSS Intron 0.31 TCGA-BA-A6DJ-01 21 47660785 47660785 T A MCM3AP Missense_Mutation p.E1858V 0.04 tolerated(0.16) benign(0.064) TCGA-BA-A6DJ-01 21 47660786 47660786 C T MCM3AP Missense_Mutation p.E1858K 0.04 tolerated(0.46) benign(0.016) TCGA-BA-A6DJ-01 22 20132802 20132802 C T ZDHHC8 Intron 0.20 TCGA-BA-A6DJ-01 22 21385560 21385560 G C SLC7A4 Missense_Mutation p.S181C 0.35 deleterious(0.01) probably_damaging(0.948) TCGA-BA-A6DJ-01 22 21989155 21989155 G A CCDC116 Missense_Mutation p.R268H 0.20 deleterious(0.04) benign(0) TCGA-BA-A6DJ-01 22 26423371 26423371 G A MYO18B Silent p.T2477T 0.28 TCGA-BA-A6DJ-01 22 29449620 29449620 G A ZNRF3 3'UTR 0.22 TCGA-BA-A6DJ-01 22 29611568 29611568 G A EMID1 Missense_Mutation p.A90T 0.24 tolerated(0.23) benign(0.007) TCGA-BA-A6DJ-01 22 36708234 36708234 C T MYH9 Missense_Mutation p.E530K 0.28 probably_damaging(0.976) TCGA-BA-A6DJ-01 22 36710351 36710351 C G MYH9 Missense_Mutation p.E465Q 0.04 benign(0.149) TCGA-BA-A6DJ-01 22 38012933 38012933 C G GGA1 Missense_Mutation p.P45A 0.26 tolerated(0.22) possibly_damaging(0.794) TCGA-BA-A6DJ-01 22 38201541 38201541 G C H1F0 5'UTR 0.06 TCGA-BA-A6DJ-01 22 39917485 39917485 T C ATF4 Missense_Mutation p.L12S 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.548) TCGA-BA-A6DJ-01 22 46654578 46654578 G C PKDREJ Missense_Mutation p.Q1548E 0.24 tolerated(1) benign(0.001) TCGA-BA-A6DJ-01 22 50722091 50722091 C G PLXNB2 Missense_Mutation p.R837T 0.28 tolerated(0.43) benign(0.004) TCGA-BA-A6DJ-01 2 11752727 11752727 C T GREB1 Missense_Mutation p.S1038F 0.22 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DJ-01 2 120194618 120194618 G A TMEM37 Missense_Mutation p.G59R 0.22 tolerated(0.11) probably_damaging(1) TCGA-BA-A6DJ-01 2 133403270 133403270 C T LYPD1 3'UTR 0.27 TCGA-BA-A6DJ-01 2 133403916 133403916 C T GPR39 3'UTR 0.20 TCGA-BA-A6DJ-01 2 160983072 160983072 G A ITGB6 Silent p.S567S 0.26 TCGA-BA-A6DJ-01 2 170371456 170371456 G A KLHL41 Missense_Mutation p.G454E 0.18 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 2 179575889 179575889 G C TTN Silent p.L9358L 0.03 TCGA-BA-A6DJ-01 2 179732807 179732807 G T CCDC141 Silent p.L840L 0.20 TCGA-BA-A6DJ-01 2 197878343 197878343 G T HNRNPA3P15 5'Flank 0.03 TCGA-BA-A6DJ-01 2 219346853 219346853 G A USP37 Missense_Mutation p.S592F 0.39 deleterious(0) possibly_damaging(0.475) TCGA-BA-A6DJ-01 2 230632274 230632274 G T TRIP12 Missense_Mutation p.S1992Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DJ-01 2 231948470 231948470 G A PSMD1 Missense_Mutation p.R572H 0.63 tolerated(0.12) benign(0.01) TCGA-BA-A6DJ-01 2 233273429 233273429 G C ALPPL2 Missense_Mutation p.G291A 0.15 tolerated(0.51) benign(0.02) TCGA-BA-A6DJ-01 2 233651923 233651923 C G GIGYF2 Nonsense_Mutation p.S221* 0.40 TCGA-BA-A6DJ-01 2 49195904 49195904 C T FSHR Missense_Mutation p.A263T 0.23 tolerated(0.24) benign(0.003) TCGA-BA-A6DJ-01 2 61118956 61118956 T C REL Missense_Mutation p.I50T 0.27 deleterious(0) probably_damaging(0.935) TCGA-BA-A6DJ-01 2 89185579 89185579 C T IGKV4-1 Silent p.S91S 0.30 TCGA-BA-A6DJ-01 3 111603716 111603716 G T PHLDB2 Missense_Mutation p.E264D 0.18 tolerated(0.58) benign(0.001) TCGA-BA-A6DJ-01 3 113330987 113330987 C G SIDT1 Missense_Mutation p.L638V 0.23 tolerated(0.26) benign(0.06) TCGA-BA-A6DJ-01 3 123018978 123018978 G A ADCY5 Silent p.T963T 0.22 TCGA-BA-A6DJ-01 3 130159096 130159096 C A COL6A5 Silent p.R1972R 0.23 TCGA-BA-A6DJ-01 3 133524729 133524729 G A SRPRB Missense_Mutation p.G13S 0.29 tolerated_low_confidence(0.3) benign(0.003) TCGA-BA-A6DJ-01 3 14187459 14187459 G A XPC Silent p.F935F 0.24 TCGA-BA-A6DJ-01 3 170625446 170625446 C A EIF5A2 Missense_Mutation p.K50N 0.29 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DJ-01 3 170723257 170723257 C G SLC2A2 Missense_Mutation p.L260F 0.41 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DJ-01 3 186839066 186839066 G C RPL39L Missense_Mutation p.T8S 0.32 deleterious(0.05) benign(0.006) TCGA-BA-A6DJ-01 3 190106101 190106101 G A CLDN16 Missense_Mutation p.D65N 0.27 tolerated_low_confidence(0.24) benign(0.003) TCGA-BA-A6DJ-01 3 39230543 39230543 C T XIRP1 Missense_Mutation p.E132K 0.04 deleterious(0.04) probably_damaging(0.913) TCGA-BA-A6DJ-01 3 46063050 46063050 C T XCR1 Silent p.S130S 0.22 TCGA-BA-A6DJ-01 3 48611304 48611304 C T COL7A1 Missense_Mutation p.G2174D 0.11 probably_damaging(0.982) TCGA-BA-A6DJ-01 3 49462196 49462196 C T NICN1 3'UTR 0.40 TCGA-BA-A6DJ-01 3 49755598 49755598 G A AMIGO3 Missense_Mutation p.S434L 0.03 deleterious(0) probably_damaging(0.986) TCGA-BA-A6DJ-01 3 50339650 50339650 G T HYAL1 Silent p.I246I 0.23 TCGA-BA-A6DJ-01 3 50339662 50339662 G A HYAL1 Silent p.L242L 0.23 TCGA-BA-A6DJ-01 3 89499368 89499368 C T EPHA3 Silent p.P846P 0.24 TCGA-BA-A6DJ-01 3 97852281 97852281 C T OR5H1 Missense_Mutation p.S247F 0.28 deleterious(0) benign(0.337) TCGA-BA-A6DJ-01 4 126373545 126373545 C T FAT4 Missense_Mutation p.R3792W 0.26 probably_damaging(0.996) TCGA-BA-A6DJ-01 4 128886243 128886243 C T MFSD8 Missense_Mutation p.D16N 0.24 tolerated(0.4) benign(0.005) TCGA-BA-A6DJ-01 4 155254404 155254404 T G DCHS2 Missense_Mutation p.I487L 0.21 deleterious(0.03) benign(0.097) TCGA-BA-A6DJ-01 4 162306791 162306791 T A FSTL5 3'UTR 0.37 TCGA-BA-A6DJ-01 4 187521139 187521140 - TACT FAT1 Frame_Shift_Ins p.P4007Ifs*45 0.35 TCGA-BA-A6DJ-01 4 187538959 187538960 - A FAT1 Frame_Shift_Ins p.S2928Efs*2 0.25 TCGA-BA-A6DJ-01 4 55958791 55958791 G A KDR Missense_Mutation p.S1021L 0.21 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 4 68698966 68698966 C G TMPRSS11D Silent p.L216L 0.26 TCGA-BA-A6DJ-01 4 72363371 72363371 C G SLC4A4 Missense_Mutation p.L710V 0.22 deleterious(0) probably_damaging(0.96) TCGA-BA-A6DJ-01 5 118969673 118969673 G A FAM170A Missense_Mutation p.R77Q 0.26 tolerated(1) benign(0.003) TCGA-BA-A6DJ-01 5 128983509 128983509 G T ADAMTS19 Missense_Mutation p.A636S 0.23 tolerated(0.15) benign(0.007) TCGA-BA-A6DJ-01 5 140517496 140517496 G C PCDHB5 3'UTR 0.36 TCGA-BA-A6DJ-01 5 140563747 140563747 C T PCDHB16 Missense_Mutation p.S538F 0.51 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-BA-A6DJ-01 5 147499606 147499606 A C SPINK5 Missense_Mutation p.N783T 0.22 deleterious(0.05) probably_damaging(0.991) TCGA-BA-A6DJ-01 5 149206434 149206434 G C PPARGC1B Missense_Mutation p.D151H 0.22 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 5 15936965 15936965 C T FBXL7 Silent p.N382N 0.17 TCGA-BA-A6DJ-01 5 171481612 171481612 C T STK10 Silent p.A871A 0.33 TCGA-BA-A6DJ-01 5 180335696 180335696 C T BTNL8 Missense_Mutation p.R54W 0.23 deleterious(0) benign(0.364) TCGA-BA-A6DJ-01 5 32052762 32052762 C G PDZD2 Missense_Mutation p.Q571E 0.05 deleterious(0) benign(0.254) TCGA-BA-A6DJ-01 5 34945895 34945895 A T DNAJC21 Missense_Mutation p.Q391L 0.18 tolerated(0.05) benign(0.149) TCGA-BA-A6DJ-01 5 37605166 37605166 G T WDR70 Silent p.A306A 0.30 TCGA-BA-A6DJ-01 5 64769418 64769418 G A ADAMTS6 Missense_Mutation p.S28L 0.22 tolerated(0.07) benign(0.001) TCGA-BA-A6DJ-01 5 7773108 7773108 G A ADCY2 Missense_Mutation p.E760K 0.26 deleterious(0.01) possibly_damaging(0.623) TCGA-BA-A6DJ-01 5 82969304 82969304 G A HAPLN1 Silent p.C13C 0.35 TCGA-BA-A6DJ-01 5 87516424 87516424 C G TMEM161B Missense_Mutation p.M134I 0.27 tolerated(0.51) benign(0.136) TCGA-BA-A6DJ-01 5 89769875 89769875 C T MBLAC2 Missense_Mutation p.A79T 0.35 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 5 96518836 96518836 C G RIOK2 Missense_Mutation p.L20F 0.21 deleterious(0) probably_damaging(0.997) TCGA-BA-A6DJ-01 6 100838258 100838258 A T SIM1 Silent p.V760V 0.19 TCGA-BA-A6DJ-01 6 100838266 100838266 T G SIM1 Missense_Mutation p.T758P 0.20 deleterious_low_confidence(0.04) benign(0.006) TCGA-BA-A6DJ-01 6 111628751 111628751 G A REV3L Missense_Mutation p.S3022L 0.30 tolerated(0.09) benign(0.002) TCGA-BA-A6DJ-01 6 117240317 117240317 G A RFX6 Missense_Mutation p.R347K 0.23 tolerated(0.07) possibly_damaging(0.464) TCGA-BA-A6DJ-01 6 126080335 126080335 C T HEY2 Missense_Mutation p.A134V 0.21 tolerated(0.28) possibly_damaging(0.464) TCGA-BA-A6DJ-01 6 146720619 146720619 C T GRM1 Missense_Mutation p.T815I 0.30 deleterious(0.04) possibly_damaging(0.542) TCGA-BA-A6DJ-01 6 153043059 153043059 C T MYCT1 Missense_Mutation p.R127C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DJ-01 6 31323268 31323268 A C HLA-B Missense_Mutation p.W241G 0.23 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BA-A6DJ-01 6 31737492 31737492 G T VWA7 Missense_Mutation p.T426N 0.05 tolerated(0.32) possibly_damaging(0.557) TCGA-BA-A6DJ-01 6 31934589 31934589 G A SKIV2L Missense_Mutation p.S769N 0.25 deleterious(0) probably_damaging(1) TCGA-BA-A6DJ-01 6 32364031 32364031 T G BTNL2 Missense_Mutation p.Y288S 0.35 tolerated(1) possibly_damaging(0.544) TCGA-BA-A6DJ-01 6 36492197 36492197 A C STK38 Missense_Mutation p.F76C 0.28 deleterious(0) probably_damaging(0.986) TCGA-BA-A6DJ-01 6 36867326 36867326 G A C6orf89 Missense_Mutation p.E43K 0.23 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DJ-01 6 562846 562846 C T EXOC2 Splice_Site p.X597_splice 0.25 TCGA-BA-A6DJ-01 7 100421281 100421281 C T EPHB4 Silent p.E132E 0.37 TCGA-BA-A6DJ-01 7 100675301 100675301 G A MUC17 Missense_Mutation p.E202K 0.03 benign(0.004) TCGA-BA-A6DJ-01 7 100678400 100678400 G C MUC17 Missense_Mutation p.E1235Q 0.28 unknown(0) TCGA-BA-A6DJ-01 7 100684915 100684915 C T MUC17 Silent p.V3406V 0.04 TCGA-BA-A6DJ-01 7 100684956 100684956 C G MUC17 Nonsense_Mutation p.S3420* 0.03 TCGA-BA-A6DJ-01 7 100685698 100685698 C T MUC17 Silent p.I3667I 0.03 TCGA-BA-A6DJ-01 7 133002035 133002035 C T EXOC4 Intron 0.29 TCGA-BA-A6DJ-01 7 134223689 134223689 C G AKR1B10 Silent p.V276V 0.06 TCGA-BA-A6DJ-01 7 135272633 135272633 C T NUP205 Missense_Mutation p.H456Y 0.18 tolerated(0.08) benign(0.183) TCGA-BA-A6DJ-01 7 135272678 135272678 C T NUP205 Nonsense_Mutation p.Q471* 0.17 TCGA-BA-A6DJ-01 7 142571366 142571366 G A TRPV6 Silent p.I541I 0.50 TCGA-BA-A6DJ-01 7 143421718 143421718 C G FAM115C Missense_Mutation p.I811M 0.20 deleterious(0.01) probably_damaging(0.934) TCGA-BA-A6DJ-01 7 143421834 143421834 C G FAM115C 3'UTR 0.11 TCGA-BA-A6DJ-01 7 143955990 143955990 G A OR2A7 Silent p.L244L 0.08 TCGA-BA-A6DJ-01 7 148525892 148525892 C T EZH2 Missense_Mutation p.D189N 0.08 tolerated(0.48) benign(0.004) TCGA-BA-A6DJ-01 7 152012225 152012228 TCTC - KMT2C Frame_Shift_Del p.R196Kfs*9 0.63 TCGA-BA-A6DJ-01 7 30702317 30702317 G A CRHR2 Silent p.I257I 0.26 TCGA-BA-A6DJ-01 7 44280308 44280308 G A CAMK2B Missense_Mutation p.S315L 0.16 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-BA-A6DJ-01 7 47454793 47454793 A T TNS3 Missense_Mutation p.F162Y 0.21 tolerated(0.92) possibly_damaging(0.474) TCGA-BA-A6DJ-01 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.16 deleterious(0) possibly_damaging(0.869) TCGA-BA-A6DJ-01 7 65154392 65154392 C T INTS4L2 RNA 0.23 TCGA-BA-A6DJ-01 7 79840284 79840284 G C GNAI1 Splice_Site p.X197_splice 0.26 TCGA-BA-A6DJ-01 7 86415715 86415715 G A GRM3 Missense_Mutation p.E203K 0.32 deleterious(0) probably_damaging(0.984) TCGA-BA-A6DJ-01 8 110519954 110519954 G C PKHD1L1 Missense_Mutation p.R3686T 0.24 tolerated(0.16) benign(0.103) TCGA-BA-A6DJ-01 8 121220601 121220601 G A COL14A1 Splice_Site p.X441_splice 0.38 TCGA-BA-A6DJ-01 8 132052561 132052561 G A ADCY8 Missense_Mutation p.R7C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-BA-A6DJ-01 8 23190959 23190959 G A LOXL2 Silent p.F307F 0.23 TCGA-BA-A6DJ-01 8 30669897 30669898 - C PPP2CB Frame_Shift_Ins p.V14Gfs*8 0.29 TCGA-BA-A6DJ-01 8 72184108 72184108 G T EYA1 Nonsense_Mutation p.S284* 0.03 TCGA-BA-A6DJ-01 8 77617325 77617325 C G ZFHX4 Missense_Mutation p.S334R 0.20 possibly_damaging(0.504) TCGA-BA-A6DJ-01 9 107379601 107379601 G A OR13C9 Silent p.I295I 0.20 TCGA-BA-A6DJ-01 9 110091856 110091856 G C RAD23B Silent p.V383V 0.38 TCGA-BA-A6DJ-01 9 110091971 110091971 G A RAD23B 3'UTR 0.47 TCGA-BA-A6DJ-01 9 127549502 127549502 G A OLFML2A Silent p.A113A 0.28 TCGA-BA-A6DJ-01 9 129376761 129376761 G C LMX1B Missense_Mutation p.E11D 0.37 tolerated_low_confidence(0.14) benign(0.003) TCGA-BA-A6DJ-01 9 130863668 130863668 C G SLC25A25 Missense_Mutation p.L157V 0.07 tolerated(0.11) benign(0.121) TCGA-BA-A6DJ-01 9 131256853 131256853 C T ODF2 Missense_Mutation p.T606M 0.31 deleterious(0.02) possibly_damaging(0.5) TCGA-BA-A6DJ-01 9 134151451 134151451 G A FAM78A Missense_Mutation p.T39M 0.42 tolerated(0.13) benign(0.006) TCGA-BA-A6DJ-01 9 139402468 139402468 G T NOTCH1 Nonsense_Mutation p.S1150* 0.52 TCGA-BA-A6DJ-01 9 139747978 139747978 G C MAMDC4 Intron 0.21 TCGA-BA-A6DJ-01 9 139748249 139748249 G C MAMDC4 Missense_Mutation p.E159Q 0.27 tolerated(0.09) benign(0.233) TCGA-BA-A6DJ-01 9 139837261 139837261 C T FBXW5 Silent p.P162P 0.05 TCGA-BA-A6DJ-01 9 15047915 15047915 G A RP11-54D18.3 RNA 0.24 TCGA-BA-A6DJ-01 9 27949845 27949845 C G LINGO2 Silent p.L275L 0.13 TCGA-BA-A6DJ-01 9 34691101 34691101 G C CCL19 Silent p.L12L 0.50 TCGA-BA-A6DJ-01 9 39133006 39133006 G A CNTNAP3 Missense_Mutation p.S668F 0.33 deleterious(0) benign(0.162) TCGA-BA-A6DJ-01 9 88842265 88842265 G C C9orf153 Missense_Mutation p.P97A 0.40 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-BA-A6DJ-01 9 97084489 97084489 G A NUTM2F Missense_Mutation p.A279V 0.18 deleterious(0.02) probably_damaging(0.941) TCGA-BA-A6DJ-01 X 100871295 100871295 G C ARMCX6 Missense_Mutation p.P106A 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-BA-A6DJ-01 X 101908720 101908720 C G GPRASP1 5'UTR 0.65 TCGA-BA-A6DJ-01 X 109694273 109694273 T C RGAG1 Missense_Mutation p.M143T 0.59 deleterious(0.01) possibly_damaging(0.888) TCGA-BA-A6DJ-01 X 120182405 120182405 C T GLUD2 Silent p.Y289Y 0.60 TCGA-BA-A6DJ-01 X 134994509 134994509 G C SAGE1 Missense_Mutation p.E851Q 0.56 deleterious(0.05) probably_damaging(0.994) TCGA-BA-A6DJ-01 X 16887263 16887263 G C RBBP7 Missense_Mutation p.L77V 0.61 tolerated(0.13) probably_damaging(0.971) TCGA-BA-A6DJ-01 X 47307709 47307709 C G ZNF41 Missense_Mutation p.R487T 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A6DJ-01 X 62570369 62570369 G C SPIN4 Missense_Mutation p.I110M 0.07 deleterious(0) possibly_damaging(0.789) TCGA-BA-A6DJ-01 X 79975057 79975057 C G BRWD3 Missense_Mutation p.D659H 0.60 deleterious(0) probably_damaging(0.99) TCGA-BA-A6DL-01 10 118434597 118434597 C G HSPA12A Missense_Mutation p.D575H 0.29 deleterious(0.01) probably_damaging(0.916) TCGA-BA-A6DL-01 10 46250521 46250521 G A FAM21C Missense_Mutation p.D460N 0.22 tolerated(0.97) benign(0.244) TCGA-BA-A6DL-01 10 75542252 75542252 A T CHCHD1 Intron 0.23 TCGA-BA-A6DL-01 10 96798665 96798665 G T CYP2C8 Missense_Mutation p.P427H 0.14 deleterious(0) probably_damaging(0.993) TCGA-BA-A6DL-01 11 124413211 124413211 G A OR8B12 Silent p.L114L 0.27 TCGA-BA-A6DL-01 11 125453573 125453573 C T EI24 Missense_Mutation p.H339Y 0.17 deleterious_low_confidence(0.01) benign(0.352) TCGA-BA-A6DL-01 11 250804 250804 C G PSMD13 Missense_Mutation p.P261R 0.26 deleterious(0.02) possibly_damaging(0.783) TCGA-BA-A6DL-01 11 61605285 61605285 C T FADS2 Silent p.F81F 0.24 TCGA-BA-A6DL-01 11 63057996 63057996 G T SLC22A10 Missense_Mutation p.W120L 0.24 deleterious(0) probably_damaging(1) TCGA-BA-A6DL-01 11 64854194 64854194 C T ZFPL1 Silent p.I137I 0.11 TCGA-BA-A6DL-01 11 94801081 94801081 G T SRSF8 Missense_Mutation p.D231Y 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-BA-A6DL-01 12 107141334 107141334 G A RFX4 Missense_Mutation p.V594I 0.28 tolerated_low_confidence(0.42) benign(0.079) TCGA-BA-A6DL-01 12 117175616 117175616 G A C12orf49 Silent p.F30F 0.43 TCGA-BA-A6DL-01 12 131476897 131476897 G A GPR133 Missense_Mutation p.S309N 0.36 tolerated(1) benign(0) TCGA-BA-A6DL-01 12 43748066 43748066 G A ADAMTS20 Silent p.Y1893Y 0.33 TCGA-BA-A6DL-01 12 52574294 52574294 C T KRT80 Intron 0.24 TCGA-BA-A6DL-01 12 53776193 53776193 C T SP1 Silent p.N154N 0.35 TCGA-BA-A6DL-01 12 63541224 63541224 T A AVPR1A Missense_Mutation p.N391I 0.38 tolerated(0.11) benign(0.126) TCGA-BA-A6DL-01 12 98848918 98848918 G T SLC9A7P1 RNA 0.22 TCGA-BA-A6DL-01 14 24546877 24546877 G A CPNE6 Missense_Mutation p.G538S 0.18 deleterious(0.05) benign(0.441) TCGA-BA-A6DL-01 14 35761690 35761690 G A PSMA6 Missense_Mutation p.R3H 0.22 deleterious(0.03) benign(0.094) TCGA-BA-A6DL-01 14 74425079 74425081 TAG - ENTPD5 3'Flank 0.43 TCGA-BA-A6DL-01 14 77873857 77873857 C T NOXRED1 Missense_Mutation p.E161K 0.17 tolerated(0.87) benign(0.006) TCGA-BA-A6DL-01 14 92136294 92136294 G T CATSPERB Missense_Mutation p.S384Y 0.14 deleterious(0.02) probably_damaging(0.98) TCGA-BA-A6DL-01 15 102261498 102261498 C T TARSL2 Missense_Mutation p.E133K 0.28 tolerated(0.14) benign(0.022) TCGA-BA-A6DL-01 15 24923162 24923162 C A NPAP1 Silent p.V716V 0.15 TCGA-BA-A6DL-01 15 40857019 40857020 - A C15orf57 5'UTR 0.12 TCGA-BA-A6DL-01 15 74327691 74327691 A T PML Intron 0.34 TCGA-BA-A6DL-01 16 61760936 61760936 T A CDH8 Intron 0.28 TCGA-BA-A6DL-01 16 81973600 81973600 A T PLCG2 Missense_Mutation p.E1139D 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BA-A6DL-01 17 16455357 16455357 C G ZNF287 Missense_Mutation p.G700A 0.12 deleterious(0) probably_damaging(0.996) TCGA-BA-A6DL-01 17 37947745 37947745 T G IKZF3 Missense_Mutation p.K172N 0.27 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DL-01 17 56281612 56281612 C A EPX Missense_Mutation p.T659N 0.23 deleterious(0) probably_damaging(0.938) TCGA-BA-A6DL-01 17 7005470 7005470 G C ASGR2 Missense_Mutation p.L237V 0.16 deleterious(0) possibly_damaging(0.842) TCGA-BA-A6DL-01 17 7163061 7163061 G A ELP5 3'UTR 0.10 TCGA-BA-A6DL-01 17 74010655 74010655 T C EVPL Missense_Mutation p.E742G 0.18 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DL-01 17 7577550 7577550 C A TP53 Missense_Mutation p.G244V 0.10 deleterious(0) probably_damaging(1) TCGA-BA-A6DL-01 17 7579373 7579373 C A TP53 Missense_Mutation p.G105V 0.28 deleterious(0) probably_damaging(1) TCGA-BA-A6DL-01 18 321680 321680 C T COLEC12 Missense_Mutation p.E731K 0.12 deleterious(0) probably_damaging(0.96) TCGA-BA-A6DL-01 19 10742824 10742824 T A SLC44A2 Missense_Mutation p.L272Q 0.28 deleterious(0.02) possibly_damaging(0.589) TCGA-BA-A6DL-01 19 2180755 2180755 G A DOT1L Missense_Mutation p.R42Q 0.20 deleterious(0) probably_damaging(0.937) TCGA-BA-A6DL-01 19 48244517 48244517 G T EHD2 Missense_Mutation p.G487V 0.40 deleterious(0.01) probably_damaging(0.975) TCGA-BA-A6DL-01 19 5744474 5744474 T C CATSPERD Missense_Mutation p.F204L 0.15 tolerated(0.32) benign(0.034) TCGA-BA-A6DL-01 19 58083969 58083969 C T ZNF416 Missense_Mutation p.A435T 0.09 tolerated(0.07) benign(0.006) TCGA-BA-A6DL-01 19 58549368 58549368 C T ZSCAN1 Missense_Mutation p.A55V 0.09 deleterious(0) probably_damaging(0.998) TCGA-BA-A6DL-01 19 7687231 7687231 C T XAB2 Missense_Mutation p.E535K 0.16 deleterious(0) possibly_damaging(0.904) TCGA-BA-A6DL-01 1 14075943 14075943 A G PRDM2 Missense_Mutation p.S158G 0.13 benign(0.123) TCGA-BA-A6DL-01 1 19596945 19596946 - TGG AKR7L In_Frame_Ins p.T56dup 0.19 TCGA-BA-A6DL-01 1 198492565 198492565 C T ATP6V1G3 Missense_Mutation p.D105N 0.16 tolerated(0.09) benign(0.038) TCGA-BA-A6DL-01 1 200882790 200882790 T C C1orf106 3'UTR 0.12 TCGA-BA-A6DL-01 1 200943897 200943897 C T KIF21B Missense_Mutation p.D1587N 0.28 tolerated(0.06) probably_damaging(0.977) TCGA-BA-A6DL-01 1 204086308 204086308 A T SOX13 Missense_Mutation p.Q217L 0.31 deleterious(0.03) benign(0.019) TCGA-BA-A6DL-01 1 228582787 228582787 G A TRIM11 Silent p.H342H 0.38 TCGA-BA-A6DL-01 1 236389816 236389816 C G ERO1LB Splice_Site p.X269_splice 0.14 TCGA-BA-A6DL-01 1 76355039 76355039 G A MSH4 Missense_Mutation p.M737I 0.14 deleterious(0.05) benign(0.374) TCGA-BA-A6DL-01 20 37580850 37580850 C G FAM83D Missense_Mutation p.S512C 0.09 tolerated(0.07) probably_damaging(1) TCGA-BA-A6DL-01 20 57429103 57429103 G T GNAS Silent p.S261S 0.11 TCGA-BA-A6DL-01 20 8737794 8737794 C T PLCB1 Silent p.P875P 0.29 TCGA-BA-A6DL-01 21 47532717 47532717 G T COL6A2 Splice_Site p.X239_splice 0.11 TCGA-BA-A6DL-01 22 26388443 26388443 G T MYO18B Missense_Mutation p.D2091Y 0.23 deleterious(0) probably_damaging(0.978) TCGA-BA-A6DL-01 22 30489931 30489931 A G HORMAD2 5'UTR 0.11 TCGA-BA-A6DL-01 22 38329111 38329111 A G MICALL1 Missense_Mutation p.N767S 0.31 deleterious(0) possibly_damaging(0.734) TCGA-BA-A6DL-01 2 121981866 121981866 C T TFCP2L1 3'UTR 0.40 TCGA-BA-A6DL-01 2 125547535 125547535 A T CNTNAP5 Missense_Mutation p.N936Y 0.05 deleterious(0) probably_damaging(0.995) TCGA-BA-A6DL-01 2 170099557 170099557 G C LRP2 Missense_Mutation p.F1192L 0.08 possibly_damaging(0.841) TCGA-BA-A6DL-01 2 29245049 29245049 G A FAM179A Silent p.T462T 0.37 TCGA-BA-A6DL-01 2 96688757 96688757 C A GPAT2 Nonsense_Mutation p.E722* 0.15 TCGA-BA-A6DL-01 3 134880877 134880877 C T EPHB1 Silent p.N480N 0.24 TCGA-BA-A6DL-01 3 148916152 148916152 A C CP Splice_Site p.X571_splice 0.10 TCGA-BA-A6DL-01 3 160395525 160395525 C G ARL14 Missense_Mutation p.L131V 0.18 tolerated(0.06) possibly_damaging(0.574) TCGA-BA-A6DL-01 3 169664511 169664511 T C RP11-379K17.4 RNA 0.38 TCGA-BA-A6DL-01 3 184079216 184079216 C T CLCN2 Missense_Mutation p.E18K 0.11 tolerated(0.12) benign(0.033) TCGA-BA-A6DL-01 3 407773 407773 G C CHL1 Missense_Mutation p.E576Q 0.12 tolerated(0.48) benign(0.008) TCGA-BA-A6DL-01 3 46399758 46399758 C T CCR2 Missense_Mutation p.T247I 0.31 tolerated(0.29) benign(0.017) TCGA-BA-A6DL-01 3 47041666 47041666 C A NBEAL2 Silent p.G1359G 0.34 TCGA-BA-A6DL-01 3 51929136 51929136 T C IQCF1 Missense_Mutation p.T130A 0.40 deleterious(0.01) benign(0.241) TCGA-BA-A6DL-01 3 78795900 78795900 C T ROBO1 Missense_Mutation p.R217K 0.07 deleterious(0) probably_damaging(0.987) TCGA-BA-A6DL-01 4 106157821 106157821 G T TET2 Missense_Mutation p.G908C 0.45 deleterious(0.02) benign(0.01) TCGA-BA-A6DL-01 4 13606484 13606484 T C BOD1L1 Silent p.V680V 0.26 TCGA-BA-A6DL-01 4 177084311 177084311 A G WDR17 Missense_Mutation p.M977V 0.40 tolerated(0.29) benign(0.01) TCGA-BA-A6DL-01 4 57182643 57182643 G A KIAA1211 Missense_Mutation p.R992Q 0.13 deleterious(0.04) benign(0.417) TCGA-BA-A6DL-01 4 84370110 84370110 C A HELQ Missense_Mutation p.W339C 0.32 deleterious(0) probably_damaging(0.992) TCGA-BA-A6DL-01 4 84370111 84370111 C T HELQ Nonsense_Mutation p.W339* 0.29 TCGA-BA-A6DL-01 5 149433887 149433887 G A CSF1R Missense_Mutation p.R921W 0.14 deleterious(0) possibly_damaging(0.513) TCGA-BA-A6DL-01 5 168179996 168179996 G - SLIT3 Frame_Shift_Del p.P646Lfs*13 0.26 TCGA-BA-A6DL-01 5 176638614 176638614 C T NSD1 Nonsense_Mutation p.R1072* 0.16 TCGA-BA-A6DL-01 5 176638999 176639006 GGGATGAG - NSD1 Frame_Shift_Del p.R1200Lfs*5 0.24 TCGA-BA-A6DL-01 6 100057104 100057104 G A PRDM13 Silent p.E106E 0.27 TCGA-BA-A6DL-01 6 130762378 130762378 G C TMEM200A Missense_Mutation p.G271R 0.22 tolerated(0.58) benign(0.12) TCGA-BA-A6DL-01 6 150464598 150464598 G A PPP1R14C Nonsense_Mutation p.W90* 0.12 TCGA-BA-A6DL-01 6 150569991 150569991 G A PPP1R14C 3'UTR 0.22 TCGA-BA-A6DL-01 6 154439939 154439939 A G OPRM1 3'Flank 0.11 TCGA-BA-A6DL-01 6 158923368 158923368 C T TULP4 Silent p.F891F 0.13 TCGA-BA-A6DL-01 6 30122024 30122024 G A TRIM10 Missense_Mutation p.R390W 0.16 deleterious(0) probably_damaging(1) TCGA-BA-A6DL-01 6 38838177 38838177 G T DNAH8 Missense_Mutation p.V2060F 0.07 probably_damaging(0.91) TCGA-BA-A6DL-01 6 42986849 42986849 C T KLHDC3 Silent p.L317L 0.40 TCGA-BA-A6DL-01 6 43011260 43011260 C T CUL7 Missense_Mutation p.R1178H 0.07 deleterious(0) probably_damaging(1) TCGA-BA-A6DL-01 7 127670544 127670544 G C LRRC4 Missense_Mutation p.C50W 0.12 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DL-01 7 127670778 127670778 G C LRRC4 5'UTR 0.11 TCGA-BA-A6DL-01 7 42005626 42005626 G A GLI3 Silent p.G1015G 0.24 TCGA-BA-A6DL-01 7 42005627 42005627 C A GLI3 Missense_Mutation p.G1015V 0.23 tolerated(0.09) benign(0.007) TCGA-BA-A6DL-01 7 92764237 92764237 T A SAMD9L Missense_Mutation p.R350W 0.35 deleterious(0) probably_damaging(0.942) TCGA-BA-A6DL-01 8 103666087 103666087 G C KLF10 Intron 0.23 TCGA-BA-A6DL-01 8 110520343 110520343 A G PKHD1L1 Missense_Mutation p.T3749A 0.30 tolerated(0.12) benign(0.002) TCGA-BA-A6DL-01 8 1497631 1497631 C G DLGAP2 Missense_Mutation p.L258V 0.26 tolerated(0.1) benign(0.407) TCGA-BA-A6DL-01 8 17206461 17206461 C T MTMR7 Splice_Site p.X199_splice 0.21 TCGA-BA-A6DL-01 8 21882696 21882696 G A NPM2 5'UTR 0.41 TCGA-BA-A6DL-01 8 3081280 3081280 C T CSMD1 Silent p.P1485P 0.15 TCGA-BA-A6DL-01 9 123632816 123632816 G T PHF19 Missense_Mutation p.A90D 0.15 deleterious(0) probably_damaging(0.999) TCGA-BA-A6DL-01 9 136268926 136268926 G C C9orf96 Missense_Mutation p.G526A 0.25 tolerated(1) benign(0.001) TCGA-BA-A6DL-01 9 32542374 32542374 C T TOPORS Missense_Mutation p.E717K 0.07 deleterious_low_confidence(0) unknown(0) TCGA-BA-A6DL-01 9 79465540 79465540 T C PRUNE2 Missense_Mutation p.I61M 0.13 deleterious(0) possibly_damaging(0.892) TCGA-BA-A6DL-01 9 90313650 90313650 G T DAPK1 Silent p.P897P 0.07 TCGA-BA-A6DL-01 X 150348704 150348704 G A GPR50 Missense_Mutation p.A217T 0.37 tolerated(0.11) benign(0.076) TCGA-BA-A6DL-01 X 77131009 77131009 C T MAGT1 Missense_Mutation p.R95H 0.29 tolerated(0.39) possibly_damaging(0.888) TCGA-BA-A8YP-01 10 119307725 119307725 C T EMX2 Silent p.D247D 0.63 TCGA-BA-A8YP-01 10 122349000 122349000 G A PPAPDC1A Missense_Mutation p.E268K 0.26 deleterious_low_confidence(0.04) benign(0.288) TCGA-BA-A8YP-01 10 56138547 56138547 T C PCDH15 Missense_Mutation p.R105G 0.18 deleterious(0) probably_damaging(0.999) TCGA-BA-A8YP-01 10 5782304 5782304 C T FAM208B Missense_Mutation p.S724F 0.36 deleterious(0.02) probably_damaging(0.95) TCGA-BA-A8YP-01 10 74813153 74813153 T C P4HA1 Missense_Mutation p.D220G 0.17 deleterious(0.01) benign(0.184) TCGA-BA-A8YP-01 10 99968590 99968590 G A R3HCC1L Missense_Mutation p.S240N 0.26 tolerated(0.48) benign(0.009) TCGA-BA-A8YP-01 11 102220775 102220775 G A BIRC2 Missense_Mutation p.E64K 0.34 deleterious(0.04) probably_damaging(0.992) TCGA-BA-A8YP-01 11 103074410 103074410 A G DYNC2H1 Missense_Mutation p.Y2739C 0.29 probably_damaging(0.993) TCGA-BA-A8YP-01 11 121008505 121008505 G A TECTA Missense_Mutation p.G1106D 0.47 deleterious(0.04) probably_damaging(0.941) TCGA-BA-A8YP-01 11 128839544 128839544 T C ARHGAP32 Missense_Mutation p.H1841R 0.58 deleterious_low_confidence(0.02) benign(0.081) TCGA-BA-A8YP-01 11 14913743 14913743 C A CYP2R1 Missense_Mutation p.K3N 0.25 tolerated_low_confidence(0.38) unknown(0) TCGA-BA-A8YP-01 11 45970983 45970983 C T PHF21A Silent p.P398P 0.16 TCGA-BA-A8YP-01 11 5537243 5537243 T G UBQLNL Missense_Mutation p.Q143H 0.31 tolerated(0.74) benign(0.001) TCGA-BA-A8YP-01 11 58034866 58034866 G A OR10W1 Silent p.F155F 0.22 TCGA-BA-A8YP-01 11 62294723 62294723 G A AHNAK Missense_Mutation p.P2389L 0.47 possibly_damaging(0.851) TCGA-BA-A8YP-01 11 64031183 64031183 C T PLCB3 Missense_Mutation p.R826W 0.14 deleterious(0) probably_damaging(0.999) TCGA-BA-A8YP-01 11 64496373 64496373 G A RASGRP2 Missense_Mutation p.S578F 0.11 deleterious(0.02) possibly_damaging(0.687) TCGA-BA-A8YP-01 11 64572247 64572247 C T MEN1 Silent p.A469A 0.19 TCGA-BA-A8YP-01 11 64855502 64855502 G T ZFPL1 Missense_Mutation p.M283I 0.22 deleterious(0.04) benign(0.147) TCGA-BA-A8YP-01 11 71724848 71724849 - CCT NUMA1 In_Frame_Ins p.E1233dup 0.16 TCGA-BA-A8YP-01 11 89431583 89431583 T C FOLH1B RNA 0.55 TCGA-BA-A8YP-01 11 96124135 96124137 TTC - JRKL In_Frame_Del p.F110del 0.55 TCGA-BA-A8YP-01 12 104121051 104121061 TTCGTGAAAGA - STAB2 Frame_Shift_Del p.F1620Sfs*18 0.19 TCGA-BA-A8YP-01 12 11420832 11420832 C A PRB3 Silent p.P117P 0.29 TCGA-BA-A8YP-01 12 123679044 123679044 G C MPHOSPH9 Missense_Mutation p.I558M 0.69 deleterious(0.02) probably_damaging(0.999) TCGA-BA-A8YP-01 12 40758785 40758785 T A LRRK2 Silent p.T2441T 0.19 TCGA-BA-A8YP-01 12 70004425 70004425 T C LRRC10 Missense_Mutation p.N65S 0.17 tolerated(1) benign(0.001) TCGA-BA-A8YP-01 12 96389516 96389516 C A HAL Missense_Mutation p.C58F 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.492) TCGA-BA-A8YP-01 13 100153989 100153989 C A TM9SF2 Silent p.P43P 0.26 TCGA-BA-A8YP-01 13 108955645 108955645 A T TNFSF13B Missense_Mutation p.S176C 0.47 deleterious(0.01) possibly_damaging(0.516) TCGA-BA-A8YP-01 13 20279929 20279929 G A PSPC1 Missense_Mutation p.P420L 0.07 tolerated(0.11) possibly_damaging(0.559) TCGA-BA-A8YP-01 13 78472336 78472336 C G EDNRB Nonstop_Mutation p.*533Sext*18 0.44 TCGA-BA-A8YP-01 14 106209287 106209287 C T IGHG1 Nonsense_Mutation p.W41* 0.73 TCGA-BA-A8YP-01 14 20296121 20296121 A C OR4N2 Missense_Mutation p.N172H 0.16 deleterious(0.01) probably_damaging(0.954) TCGA-BA-A8YP-01 14 21862286 21862286 T C CHD8 Missense_Mutation p.I1890V 0.79 tolerated(0.17) benign(0.004) TCGA-BA-A8YP-01 14 22521230 22521230 C G TRAV21 Missense_Mutation p.S84W 0.48 tolerated(0.05) benign(0.02) TCGA-BA-A8YP-01 14 24683227 24683227 A C MDP1 3'UTR 0.78 TCGA-BA-A8YP-01 14 74876487 74876487 C G SYNDIG1L 5'UTR 0.45 TCGA-BA-A8YP-01 15 22709657 22709657 C A AC116165.1 5'Flank 0.17 TCGA-BA-A8YP-01 15 25463917 25463917 C A SNORD115-28 5'Flank 0.57 TCGA-BA-A8YP-01 15 44890538 44890538 T G SPG11 Missense_Mutation p.K1309T 0.22 deleterious(0.02) possibly_damaging(0.482) TCGA-BA-A8YP-01 15 49716477 49716477 C A FGF7 5'UTR 0.10 TCGA-BA-A8YP-01 15 56923975 56923975 T C ZNF280D Silent p.A887A 0.58 TCGA-BA-A8YP-01 15 63632966 63632966 G A CA12 Missense_Mutation p.P181L 0.07 deleterious(0) probably_damaging(0.998) TCGA-BA-A8YP-01 15 72189919 72189919 G A MYO9A Missense_Mutation p.S1642L 0.25 deleterious_low_confidence(0.04) benign(0.011) TCGA-BA-A8YP-01 16 11981428 11981428 A C GSPT1 Missense_Mutation p.L319R 0.12 deleterious(0) probably_damaging(1) TCGA-BA-A8YP-01 16 16284174 16284174 G T ABCC6 Silent p.I494I 0.54 TCGA-BA-A8YP-01 16 29825093 29825093 C T PRRT2 Nonsense_Mutation p.R240* 0.16 TCGA-BA-A8YP-01 16 30081416 30081416 C T ALDOA Intron 0.21 TCGA-BA-A8YP-01 16 4833737 4833737 C T SEPT12 Silent p.Q181Q 0.65 TCGA-BA-A8YP-01 16 5057406 5057406 G A SEC14L5 Silent p.E497E 0.55 TCGA-BA-A8YP-01 16 75664388 75664388 C T KARS Missense_Mutation p.E481K 0.26 deleterious(0) probably_damaging(0.984) TCGA-BA-A8YP-01 17 2595378 2595378 C T CLUH Missense_Mutation p.A1153T 0.26 tolerated(0.06) probably_damaging(0.954) TCGA-BA-A8YP-01 17 34431941 34431941 G A CCL4 Missense_Mutation p.A33T 0.76 tolerated(0.08) benign(0.144) TCGA-BA-A8YP-01 17 36993426 36993426 C T C17orf98 Missense_Mutation p.R92K 0.67 tolerated(0.46) benign(0.059) TCGA-BA-A8YP-01 17 73495357 73495363 ACCAGAA - KIAA0195 Frame_Shift_Del p.Y1338Cfs*13 0.74 TCGA-BA-A8YP-01 17 7578431 7578431 G A TP53 Nonsense_Mutation p.Q167* 0.58 TCGA-BA-A8YP-01 18 21043044 21043044 G A RIOK3 Splice_Site p.X60_splice 0.15 TCGA-BA-A8YP-01 18 30349804 30349804 C A KLHL14 Nonsense_Mutation p.E251* 0.12 TCGA-BA-A8YP-01 19 10116617 10116617 C T COL5A3 Missense_Mutation p.G98R 0.39 unknown(0) TCGA-BA-A8YP-01 19 10224864 10224864 T C PPAN-P2RY11 Missense_Mutation p.L612P 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-BA-A8YP-01 19 11470612 11470612 G A DKFZP761J1410 Missense_Mutation p.R99Q 0.26 deleterious(0) probably_damaging(1) TCGA-BA-A8YP-01 19 12384756 12384756 C T ZNF44 Missense_Mutation p.S153N 0.21 tolerated(0.25) probably_damaging(0.985) TCGA-BA-A8YP-01 19 17337103 17337103 C G OCEL1 Missense_Mutation p.S16W 0.50 deleterious_low_confidence(0) possibly_damaging(0.55) TCGA-BA-A8YP-01 19 22271571 22271571 G C ZNF257 Missense_Mutation p.G340A 0.18 deleterious(0.04) possibly_damaging(0.7) TCGA-BA-A8YP-01 19 23328771 23328771 G C ZNF730 Missense_Mutation p.E309Q 0.38 deleterious(0.01) probably_damaging(0.967) TCGA-BA-A8YP-01 19 35251299 35251299 C A ZNF599 Missense_Mutation p.R136M 0.17 deleterious(0) possibly_damaging(0.781) TCGA-BA-A8YP-01 19 36498048 36498048 C G SYNE4 Missense_Mutation p.Q134H 0.23 tolerated(0.25) possibly_damaging(0.781) TCGA-BA-A8YP-01 19 47197242 47197242 G C PRKD2 Missense_Mutation p.P489R 0.14 tolerated(0.12) benign(0.027) TCGA-BA-A8YP-01 19 48945146 48945146 C T GRIN2D Silent p.I791I 0.12 TCGA-BA-A8YP-01 19 51503709 51503709 C T KLK8 Nonsense_Mutation p.W112* 0.14 TCGA-BA-A8YP-01 19 52394714 52394714 C T ZNF649 Silent p.E225E 0.13 TCGA-BA-A8YP-01 19 54407937 54407937 G A PRKCG Missense_Mutation p.E569K 0.23 deleterious(0.03) probably_damaging(0.959) TCGA-BA-A8YP-01 19 54746124 54746124 C T LILRA6 Missense_Mutation p.V45M 0.24 tolerated(0.15) probably_damaging(0.975) TCGA-BA-A8YP-01 19 55174358 55174358 T C LILRB4 5'UTR 0.75 TCGA-BA-A8YP-01 19 56329372 56329372 G T NLRP11 Missense_Mutation p.P57T 0.15 tolerated(1) benign(0.002) TCGA-BA-A8YP-01 19 571487 571487 G A BSG 5'Flank 0.21 TCGA-BA-A8YP-01 19 5719905 5719905 G A LONP1 Missense_Mutation p.S80L 0.21 tolerated(0.16) benign(0.01) TCGA-BA-A8YP-01 19 57327859 57327859 T C PEG3 Missense_Mutation p.R651G 0.54 deleterious(0.03) benign(0.016) TCGA-BA-A8YP-01 19 5754141 5754141 A G CATSPERD Splice_Site p.X389_splice 0.19 TCGA-BA-A8YP-01 19 57883219 57883219 C G ZNF547 Missense_Mutation p.Q32E 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-BA-A8YP-01 1 114443146 114443146 G A AP4B1 Intron 0.50 TCGA-BA-A8YP-01 1 144930693 144930693 C T PDE4DIP Intron 0.38 TCGA-BA-A8YP-01 1 144930711 144930711 C G PDE4DIP Intron 0.32 TCGA-BA-A8YP-01 1 144931010 144931010 C A PDE4DIP Intron 0.32 TCGA-BA-A8YP-01 1 150830859 150830859 C T ARNT Missense_Mutation p.A35T 0.15 tolerated(0.27) benign(0.002) TCGA-BA-A8YP-01 1 157485420 157485420 T G FCRL5 3'UTR 0.40 TCGA-BA-A8YP-01 1 157805671 157805671 T G CD5L Missense_Mutation p.E110D 0.18 tolerated(1) benign(0.001) TCGA-BA-A8YP-01 1 15909714 15909714 G A AGMAT Missense_Mutation p.A150V 0.31 deleterious(0.03) possibly_damaging(0.474) TCGA-BA-A8YP-01 1 160261152 160261152 G C COPA Silent p.L1140L 0.31 TCGA-BA-A8YP-01 1 171302029 171302029 G A FMO4 Missense_Mutation p.G270E 0.41 deleterious(0) probably_damaging(1) TCGA-BA-A8YP-01 1 204956668 204956668 T C NFASC Missense_Mutation p.F865L 0.28 tolerated(0.65) benign(0.439) TCGA-BA-A8YP-01 1 219384841 219384841 A C LYPLAL1 Missense_Mutation p.Q162P 0.11 deleterious(0.01) benign(0.285) TCGA-BA-A8YP-01 1 219384842 219384842 G A LYPLAL1 Silent p.Q162Q 0.11 TCGA-BA-A8YP-01 1 220179656 220179656 C G EPRS Splice_Site p.X581_splice 0.33 TCGA-BA-A8YP-01 1 226036232 226036232 T C TMEM63A Silent p.K737K 0.45 TCGA-BA-A8YP-01 1 228463619 228463619 G A OBSCN Missense_Mutation p.E2413K 0.31 probably_damaging(0.928) TCGA-BA-A8YP-01 1 246027161 246027161 G T SMYD3 Missense_Mutation p.Q281K 0.13 tolerated(0.76) benign(0) TCGA-BA-A8YP-01 1 248437022 248437022 A G OR2T33 Missense_Mutation p.I32T 0.32 tolerated(0.07) benign(0.002) TCGA-BA-A8YP-01 1 29064167 29064167 C A YTHDF2 Intron 0.33 TCGA-BA-A8YP-01 1 32828198 32828198 A C TSSK3 5'UTR 0.36 TCGA-BA-A8YP-01 1 35847020 35847020 C A ZMYM4 Missense_Mutation p.Q448K 0.32 tolerated(0.6) benign(0.297) TCGA-BA-A8YP-01 1 36359740 36359740 C T AGO1 Missense_Mutation p.S251F 0.25 deleterious(0) possibly_damaging(0.891) TCGA-BA-A8YP-01 1 36385120 36385120 C T AGO1 Missense_Mutation p.S829L 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-BA-A8YP-01 1 70225980 70225980 C T LRRC7 Silent p.H31H 0.18 TCGA-BA-A8YP-01 1 7724457 7724457 T C CAMTA1 Missense_Mutation p.F617S 0.21 tolerated_low_confidence(0.05) probably_damaging(0.993) TCGA-BA-A8YP-01 1 87599295 87599295 A G RP5-1052I5.2 Splice_Site p.X256_splice 0.21 TCGA-BA-A8YP-01 20 3557521 3557521 T C ATRN Missense_Mutation p.Y744H 0.32 tolerated(0.1) benign(0.125) TCGA-BA-A8YP-01 20 45358032 45358032 G C SLC2A10 Silent p.L484L 0.30 TCGA-BA-A8YP-01 20 61910339 61910339 C T ARFGAP1 Silent p.L207L 0.22 TCGA-BA-A8YP-01 20 62631033 62631033 C T PRPF6 Missense_Mutation p.S315L 0.22 deleterious(0) benign(0.217) TCGA-BA-A8YP-01 21 27097592 27097592 G C ATP5J Silent p.L86L 0.24 TCGA-BA-A8YP-01 21 27097603 27097603 G C ATP5J Missense_Mutation p.L83V 0.27 tolerated(0.13) benign(0.269) TCGA-BA-A8YP-01 21 36081793 36081793 C T CLIC6 Missense_Mutation p.T619M 0.27 deleterious(0) probably_damaging(0.999) TCGA-BA-A8YP-01 21 39672327 39672327 C T KCNJ15 3'UTR 0.57 TCGA-BA-A8YP-01 22 21349209 21349209 C A LZTR1 Silent p.I612I 0.12 TCGA-BA-A8YP-01 22 25152630 25152630 C T PIWIL3 Missense_Mutation p.R133Q 0.17 tolerated(0.09) benign(0.024) TCGA-BA-A8YP-01 22 26902830 26902830 C T TFIP11 Missense_Mutation p.E92K 0.63 tolerated(0.33) benign(0.044) TCGA-BA-A8YP-01 2 11376025 11376025 C T ROCK2 Missense_Mutation p.D176N 0.30 deleterious(0) probably_damaging(1) TCGA-BA-A8YP-01 2 118583876 118583876 G C DDX18 Missense_Mutation p.R518T 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-BA-A8YP-01 2 119915201 119915201 G A C1QL2 Silent p.D215D 0.32 TCGA-BA-A8YP-01 2 141110618 141110618 C G LRP1B Missense_Mutation p.G3852R 0.31 probably_damaging(0.988) TCGA-BA-A8YP-01 2 180634263 180634263 C A ZNF385B Missense_Mutation p.A74S 0.20 tolerated(0.46) benign(0.004) TCGA-BA-A8YP-01 2 191524148 191524148 C T NAB1 Silent p.F82F 0.54 TCGA-BA-A8YP-01 2 202153425 202153425 C A ALS2CR12 Missense_Mutation p.D431Y 0.24 tolerated_low_confidence(0.52) benign(0.006) TCGA-BA-A8YP-01 2 207176200 207176200 G T ZDBF2 Missense_Mutation p.Q2316H 0.40 deleterious(0.03) benign(0) TCGA-BA-A8YP-01 2 219689278 219689278 G A PRKAG3 Missense_Mutation p.S397F 0.67 deleterious(0) probably_damaging(0.999) TCGA-BA-A8YP-01 2 233246071 233246071 G A ALPP Missense_Mutation p.E435K 0.17 tolerated(0.17) benign(0.009) TCGA-BA-A8YP-01 2 43922358 43922358 T C PLEKHH2 Missense_Mutation p.L166P 0.92 deleterious(0) probably_damaging(0.982) TCGA-BA-A8YP-01 2 64863635 64863635 G A SERTAD2 Missense_Mutation p.T124M 0.16 tolerated(0.07) possibly_damaging(0.65) TCGA-BA-A8YP-01 2 74656049 74656049 A C RTKN Missense_Mutation p.L259W 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-BA-A8YP-01 3 108366924 108366924 G A DZIP3 Missense_Mutation p.E643K 0.25 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-BA-A8YP-01 3 113775439 113775439 C G KIAA1407 5'UTR 0.40 TCGA-BA-A8YP-01 3 128628911 128628911 C T ACAD9 Silent p.L537L 0.32 TCGA-BA-A8YP-01 3 130380668 130380668 T A COL6A6 Silent p.T2006T 0.16 TCGA-BA-A8YP-01 3 137907347 137907347 A G ARMC8 5'UTR 0.27 TCGA-BA-A8YP-01 3 140401898 140401898 C A TRIM42 Missense_Mutation p.F312L 0.10 tolerated(0.27) benign(0.023) TCGA-BA-A8YP-01 3 140409995 140409995 C T TRIM42 Silent p.I682I 0.18 TCGA-BA-A8YP-01 3 150908513 150908513 A G MED12L Missense_Mutation p.N588S 0.46 tolerated(0.67) possibly_damaging(0.815) TCGA-BA-A8YP-01 3 178927974 178927974 G A PIK3CA Missense_Mutation p.E418K 0.14 tolerated(0.06) possibly_damaging(0.886) TCGA-BA-A8YP-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.26 tolerated(0.21) possibly_damaging(0.893) TCGA-BA-A8YP-01 3 183474315 183474315 G T YEATS2 Splice_Site p.X464_splice 0.08 TCGA-BA-A8YP-01 3 192053223 192053223 C T FGF12 Missense_Mutation p.R114H 0.32 deleterious(0.01) possibly_damaging(0.682) TCGA-BA-A8YP-01 3 47918946 47918946 C T MAP4 Silent p.P689P 0.54 TCGA-BA-A8YP-01 3 58179051 58179051 G C DNASE1L3 Intron 0.33 TCGA-BA-A8YP-01 3 9476521 9476521 G A SETD5 Missense_Mutation p.G115R 0.12 tolerated(0.32) possibly_damaging(0.504) TCGA-BA-A8YP-01 3 97516953 97516953 A G ARL6 3'UTR 0.19 TCGA-BA-A8YP-01 4 183960166 183960166 C T FAM92A1P2 RNA 0.13 TCGA-BA-A8YP-01 4 187159417 187159417 T C KLKB1 Missense_Mutation p.C166R 0.13 deleterious(0) probably_damaging(1) TCGA-BA-A8YP-01 4 44652088 44652088 A C YIPF7 Missense_Mutation p.D34E 0.80 deleterious(0.05) benign(0.179) TCGA-BA-A8YP-01 4 71510131 71510131 C T ENAM Silent p.N996N 0.21 TCGA-BA-A8YP-01 4 71588235 71588235 T G RUFY3 5'UTR 0.21 TCGA-BA-A8YP-01 4 74702999 74702999 G A CXCL6 Missense_Mutation p.D108N 0.26 tolerated(0.52) benign(0.046) TCGA-BA-A8YP-01 4 85722859 85722859 G A WDFY3 Silent p.P922P 0.23 TCGA-BA-A8YP-01 5 114513415 114513415 C T TRIM36 Intron 0.23 TCGA-BA-A8YP-01 5 134782660 134782660 C G C5orf20 Missense_Mutation p.E47Q 0.44 tolerated_low_confidence(0.52) benign(0.035) TCGA-BA-A8YP-01 5 140256763 140256763 C T PCDHA12 Missense_Mutation p.P569L 0.61 tolerated_low_confidence(0.84) benign(0.005) TCGA-BA-A8YP-01 5 145239439 145239439 C T GRXCR2 Missense_Mutation p.G202R 0.22 deleterious(0) probably_damaging(1) TCGA-BA-A8YP-01 5 148619446 148619446 G A ABLIM3 Missense_Mutation p.R400H 0.27 tolerated(0.06) benign(0.378) TCGA-BA-A8YP-01 5 167858265 167858265 G A WWC1 Missense_Mutation p.R699H 0.25 deleterious(0) probably_damaging(0.999) TCGA-BA-A8YP-01 5 61659554 61659554 C A KIF2A Nonsense_Mutation p.S432* 0.52 TCGA-BA-A8YP-01 5 72151642 72151642 A C TNPO1 Missense_Mutation p.N83H 0.32 tolerated(0.09) probably_damaging(0.987) TCGA-BA-A8YP-01 6 109814728 109814728 C T AK9 Silent p.K1860K 0.31 TCGA-BA-A8YP-01 6 119252823 119252823 C G MCM9 Missense_Mutation p.K22N 0.26 deleterious(0.01) possibly_damaging(0.808) TCGA-BA-A8YP-01 6 159655440 159655440 G A FNDC1 Missense_Mutation p.R1299H 0.24 deleterious_low_confidence(0) unknown(0) TCGA-BA-A8YP-01 6 30547717 30547717 G A ABCF1 Missense_Mutation p.E167K 0.26 tolerated_low_confidence(0.24) benign(0.029) TCGA-BA-A8YP-01 6 31762605 31762605 C T VARS Intron 0.19 TCGA-BA-A8YP-01 6 32825906 32825906 G T PSMB9 Missense_Mutation p.G129C 0.19 deleterious(0) probably_damaging(1) TCGA-BA-A8YP-01 6 56425108 56425108 C T DST Silent p.Q2185Q 0.21 TCGA-BA-A8YP-01 6 56484340 56484340 C G DST Intron 0.18 TCGA-BA-A8YP-01 6 90437619 90437619 T A MDN1 Missense_Mutation p.E1802V 0.46 benign(0.292) TCGA-BA-A8YP-01 6 94129050 94129050 G C EPHA7 Missense_Mutation p.Q4E 0.16 tolerated_low_confidence(0.22) benign(0.001) TCGA-BA-A8YP-01 6 96971131 96971131 A G UFL1 Missense_Mutation p.S63G 0.23 tolerated(0.24) benign(0.043) TCGA-BA-A8YP-01 7 100478967 100478967 C T SRRT Missense_Mutation p.R62W 0.28 deleterious(0.03) unknown(0) TCGA-BA-A8YP-01 7 103230261 103230261 A G RELN Silent p.C1309C 0.79 TCGA-BA-A8YP-01 7 113558642 113558642 A C PPP1R3A Missense_Mutation p.L137R 0.09 deleterious(0) benign(0.004) TCGA-BA-A8YP-01 7 120767204 120767204 G C CPED1 Missense_Mutation p.E399Q 0.30 deleterious(0.01) possibly_damaging(0.476) TCGA-BA-A8YP-01 7 128478368 128478368 G A FLNC Silent p.E365E 0.27 TCGA-BA-A8YP-01 7 137294342 137294342 G A DGKI Missense_Mutation p.A336V 0.15 tolerated(0.21) benign(0.079) TCGA-BA-A8YP-01 7 137294343 137294343 C A DGKI Missense_Mutation p.A336S 0.15 tolerated(1) benign(0.079) TCGA-BA-A8YP-01 7 140218404 140218404 C T DENND2A 3'UTR 0.72 TCGA-BA-A8YP-01 7 154863348 154863348 G T HTR5A Nonsense_Mutation p.E247* 0.52 TCGA-BA-A8YP-01 7 29035451 29035451 C G CPVL Silent p.L456L 0.25 TCGA-BA-A8YP-01 7 89790374 89790374 A G STEAP1 Missense_Mutation p.I114V 0.11 tolerated(1) benign(0.015) TCGA-BA-A8YP-01 8 104240299 104240299 G A BAALC Missense_Mutation p.R137Q 0.12 tolerated(0.32) benign(0.003) TCGA-BA-A8YP-01 8 113871474 113871474 A C CSMD3 Missense_Mutation p.L552R 0.15 deleterious(0) possibly_damaging(0.908) TCGA-BA-A8YP-01 8 139165072 139165072 G A FAM135B Missense_Mutation p.P549L 0.33 tolerated(0.08) benign(0.004) TCGA-BA-A8YP-01 8 16021623 16021623 C T MSR1 Silent p.L256L 0.17 TCGA-BA-A8YP-01 8 69027997 69027997 T C PREX2 Silent p.S1052S 0.25 TCGA-BA-A8YP-01 9 120476158 120476158 T G TLR4 Silent p.T584T 0.30 TCGA-BA-A8YP-01 9 131122696 131122696 G A SLC27A4 Missense_Mutation p.A620T 0.29 tolerated(0.67) benign(0.001) TCGA-BA-A8YP-01 9 135042129 135042129 C A NTNG2 5'UTR 0.78 TCGA-BA-A8YP-01 9 6015065 6015065 G C RANBP6 Missense_Mutation p.I181M 0.30 deleterious(0) possibly_damaging(0.521) TCGA-BA-A8YP-01 9 98775374 98775374 G A ERCC6L2 Silent p.R486R 0.30 TCGA-BA-A8YP-01 X 101805040 101805040 G A NXF4 RNA 0.43 TCGA-BA-A8YP-01 X 120009357 120009357 C T CT47B1 Silent p.G56G 0.29 TCGA-BA-A8YP-01 X 14882892 14882892 G A FANCB Silent p.I247I 0.50 TCGA-BA-A8YP-01 X 47058202 47058202 A T UBA1 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.813) TCGA-BA-A8YP-01 X 47058499 47058499 G A UBA1 Missense_Mutation p.R57Q 0.37 deleterious(0) probably_damaging(1) TCGA-BA-A8YP-01 X 68060417 68060417 A T EFNB1 Missense_Mutation p.S321C 0.26 deleterious(0) probably_damaging(0.999) TCGA-BA-A8YP-01 X 77528208 77528208 T G CYSLTR1 3'UTR 0.31 TCGA-BB-4217-01 10 5827219 5827219 C T GDI2 Missense_Mutation p.C202Y 0.06 deleterious(0.02) possibly_damaging(0.862) TCGA-BB-4217-01 10 93185163 93185163 G T HECTD2 Missense_Mutation p.K88N 0.19 deleterious_low_confidence(0.01) benign(0.004) TCGA-BB-4217-01 11 107207333 107207333 C A CWF19L2 Missense_Mutation p.C770F 0.15 deleterious(0) probably_damaging(1) TCGA-BB-4217-01 12 86373569 86373569 A G MGAT4C Missense_Mutation p.M312T 0.11 deleterious(0) possibly_damaging(0.857) TCGA-BB-4217-01 13 26788214 26788214 C A RNF6 Missense_Mutation p.R602L 0.07 tolerated(0.09) benign(0.009) TCGA-BB-4217-01 13 43500540 43500540 G T EPSTI1 Missense_Mutation p.L197M 0.05 tolerated(0.07) possibly_damaging(0.793) TCGA-BB-4217-01 14 30100144 30100144 G A PRKD1 Silent p.F492F 0.16 TCGA-BB-4217-01 16 56716445 56716445 G T MT1X 5'UTR 0.05 TCGA-BB-4217-01 16 72159281 72159281 T G PMFBP1 Silent p.T759T 0.06 TCGA-BB-4217-01 16 76556036 76556036 G A CNTNAP4 Silent p.V806V 0.09 TCGA-BB-4217-01 19 15587145 15587145 C T PGLYRP2 Silent p.L112L 0.11 TCGA-BB-4217-01 1 157804318 157804318 T G CD5L Missense_Mutation p.K199N 0.11 deleterious(0.04) benign(0.002) TCGA-BB-4217-01 1 47283811 47283812 CT - CYP4B1 Frame_Shift_Del p.L429Afs*5 0.09 TCGA-BB-4217-01 22 42525788 42525788 G A CYP2D6 Missense_Mutation p.P102S 0.09 deleterious(0.02) probably_damaging(0.991) TCGA-BB-4217-01 2 159170404 159170404 T C CCDC148 Missense_Mutation p.N256S 0.07 tolerated(0.17) possibly_damaging(0.801) TCGA-BB-4217-01 2 220078333 220078333 T C ABCB6 Missense_Mutation p.N545S 0.05 deleterious(0.02) possibly_damaging(0.723) TCGA-BB-4217-01 2 33567941 33567941 G A LTBP1 Missense_Mutation p.S1256N 0.12 tolerated(0.21) benign(0.027) TCGA-BB-4217-01 2 67626364 67626364 C G ETAA1 Missense_Mutation p.P96R 0.10 deleterious(0.03) possibly_damaging(0.876) TCGA-BB-4217-01 2 97514153 97514153 C T ANKRD39 Missense_Mutation p.C146Y 0.13 deleterious(0) probably_damaging(1) TCGA-BB-4217-01 3 150264674 150264674 C A SERP1 5'UTR 0.09 TCGA-BB-4217-01 3 160227623 160227623 T A KPNA4 Missense_Mutation p.I392L 0.17 deleterious(0.01) possibly_damaging(0.497) TCGA-BB-4217-01 3 160232877 160232877 T C KPNA4 Intron 0.12 TCGA-BB-4217-01 3 186760908 186760908 C T ST6GAL1 Silent p.A139A 0.12 TCGA-BB-4217-01 3 3139681 3139681 G A IL5RA Silent p.I194I 0.06 TCGA-BB-4217-01 3 52304734 52304734 T C WDR82 Missense_Mutation p.I85V 0.10 tolerated(1) benign(0.001) TCGA-BB-4217-01 3 52643860 52643860 C T PBRM1 Missense_Mutation p.R679H 0.12 tolerated(0.06) possibly_damaging(0.647) TCGA-BB-4217-01 4 141591969 141591969 G C TBC1D9 Missense_Mutation p.L391V 0.05 tolerated(0.07) probably_damaging(0.99) TCGA-BB-4217-01 4 156135481 156135481 G T NPY2R Missense_Mutation p.Q130H 0.12 deleterious(0) probably_damaging(0.992) TCGA-BB-4217-01 4 46307679 46307679 A G GABRA2 Silent p.S203S 0.07 TCGA-BB-4217-01 5 1272370 1272370 G A TERT Missense_Mutation p.P771L 0.20 deleterious(0) probably_damaging(0.999) TCGA-BB-4217-01 5 13814775 13814775 A C DNAH5 Missense_Mutation p.V2390G 0.09 possibly_damaging(0.637) TCGA-BB-4217-01 5 140182956 140182956 C A PCDHA3 Missense_Mutation p.A725E 0.06 deleterious_low_confidence(0.02) benign(0.173) TCGA-BB-4217-01 5 36985988 36985988 A G NIPBL Silent p.K902K 0.09 TCGA-BB-4217-01 5 71739939 71739939 C T ZNF366 Missense_Mutation p.E627K 0.05 deleterious_low_confidence(0.02) benign(0.266) TCGA-BB-4217-01 6 112390582 112390582 C A WISP3 Missense_Mutation p.S293Y 0.06 deleterious(0.02) benign(0.332) TCGA-BB-4217-01 6 71009773 71009773 T C COL9A1 Missense_Mutation p.N91S 0.13 unknown(0) TCGA-BB-4217-01 7 2984095 2984095 C T CARD11 Silent p.K145K 0.08 TCGA-BB-4217-01 7 99662274 99662274 A C ZSCAN21 3'UTR 0.07 TCGA-BB-4217-01 9 108484899 108484900 - A TMEM38B Frame_Shift_Ins p.Y181Ifs*27 0.09 TCGA-BB-4217-01 9 129642399 129642399 A C ZBTB34 Missense_Mutation p.K237Q 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-BB-4217-01 9 135277018 135277018 G A TTF1 Silent p.V397V 0.08 TCGA-BB-4223-01 10 118306823 118306823 G A PNLIP Missense_Mutation p.E22K 0.04 tolerated(0.37) benign(0.002) TCGA-BB-4223-01 10 124001494 124001494 G C TACC2 Missense_Mutation p.E2790D 0.04 probably_damaging(0.999) TCGA-BB-4223-01 10 135096618 135096618 G A TUBGCP2 Silent p.L779L 0.05 TCGA-BB-4223-01 10 30749691 30749691 C G MAP3K8 Missense_Mutation p.L444V 0.04 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BB-4223-01 10 33200866 33200866 G A ITGB1 Silent p.F552F 0.05 TCGA-BB-4223-01 10 79737257 79737257 G C POLR3A Missense_Mutation p.F1384L 0.05 tolerated(0.28) benign(0.006) TCGA-BB-4223-01 10 79737319 79737319 G A POLR3A Missense_Mutation p.H1364Y 0.05 tolerated(0.44) benign(0.001) TCGA-BB-4223-01 10 99375935 99375935 C G MORN4 3'UTR 0.42 TCGA-BB-4223-01 11 1017138 1017138 G A MUC6 Missense_Mutation p.S1888F 0.11 probably_damaging(0.974) TCGA-BB-4223-01 11 112050030 112050030 C G BCO2 Missense_Mutation p.Q40E 0.55 tolerated(0.18) benign(0.002) TCGA-BB-4223-01 11 1271273 1271273 C T MUC5B Missense_Mutation p.T4388M 0.04 benign(0.227) TCGA-BB-4223-01 11 14541701 14541701 C T PSMA1 Intron 0.05 TCGA-BB-4223-01 11 18158733 18158733 G C MRGPRX3 5'UTR 0.36 TCGA-BB-4223-01 11 27384412 27384412 C T CCDC34 Silent p.L110L 0.04 TCGA-BB-4223-01 11 3784171 3784171 G C NUP98 Silent p.L349L 0.03 TCGA-BB-4223-01 11 45927331 45927331 T G MAPK8IP1 3'UTR 0.05 TCGA-BB-4223-01 11 46321584 46321584 G C CREB3L1 Missense_Mutation p.K67N 0.28 deleterious(0.01) possibly_damaging(0.894) TCGA-BB-4223-01 11 47810131 47810131 C T NUP160 Missense_Mutation p.D1182N 0.04 deleterious(0.02) benign(0.38) TCGA-BB-4223-01 11 50003785 50003785 G A OR4C12 Nonsense_Mutation p.Q85* 0.37 TCGA-BB-4223-01 11 5510656 5510656 T C OR52D1 Silent p.A240A 0.03 TCGA-BB-4223-01 11 621851 621851 G A CDHR5 Silent p.P122P 0.07 TCGA-BB-4223-01 11 6291978 6291978 C T CCKBR Silent p.D252D 0.43 TCGA-BB-4223-01 11 65338884 65338884 C G SSSCA1 Silent p.L93L 0.06 TCGA-BB-4223-01 11 65638808 65638808 C A EFEMP2 Nonsense_Mutation p.E63* 0.05 TCGA-BB-4223-01 11 6621416 6621416 G C RRP8 Nonsense_Mutation p.S444* 0.04 TCGA-BB-4223-01 11 66811231 66811231 C T SYT12 Silent p.N248N 0.05 TCGA-BB-4223-01 11 67120197 67120197 C T POLD4 Silent p.L88L 0.09 TCGA-BB-4223-01 11 74914390 74914390 G T SLCO2B1 Missense_Mutation p.D623Y 0.38 deleterious(0) probably_damaging(1) TCGA-BB-4223-01 12 108082473 108082473 C T PWP1 Silent p.R71R 0.29 TCGA-BB-4223-01 12 108939002 108939002 G C SART3 Silent p.L214L 0.54 TCGA-BB-4223-01 12 109647006 109647006 C T ACACB Missense_Mutation p.R1033W 0.25 deleterious(0) probably_damaging(0.953) TCGA-BB-4223-01 12 120652792 120652792 C T PXN Missense_Mutation p.A386T 0.61 deleterious(0) possibly_damaging(0.719) TCGA-BB-4223-01 12 122677376 122677376 G A LRRC43 Missense_Mutation p.E392K 0.03 tolerated(0.41) benign(0.055) TCGA-BB-4223-01 12 1943732 1943732 G A LRTM2 Missense_Mutation p.V320I 0.10 tolerated(1) benign(0) TCGA-BB-4223-01 12 4705861 4705861 C T DYRK4 Missense_Mutation p.R176C 0.25 deleterious(0) probably_damaging(1) TCGA-BB-4223-01 12 53702757 53702757 G A AAAS Missense_Mutation p.S328L 0.03 tolerated(0.11) benign(0.008) TCGA-BB-4223-01 12 53702953 53702953 G A AAAS Missense_Mutation p.S308L 0.04 deleterious(0.01) benign(0.213) TCGA-BB-4223-01 12 56812008 56812008 C G TIMELESS Missense_Mutation p.D1122H 0.03 tolerated_low_confidence(0.11) benign(0.007) TCGA-BB-4223-01 12 63225906 63225906 C T PPM1H Silent p.L133L 0.45 TCGA-BB-4223-01 12 70824287 70824287 C T KCNMB4 Missense_Mutation p.R163C 0.04 deleterious(0) probably_damaging(0.994) TCGA-BB-4223-01 12 8375318 8375318 G A FAM90A1 Silent p.L165L 0.04 TCGA-BB-4223-01 12 91347227 91347227 T - CCER1 3'UTR 0.24 TCGA-BB-4223-01 13 108518355 108518355 C T FAM155A Missense_Mutation p.R197Q 0.11 tolerated(0.13) benign(0.031) TCGA-BB-4223-01 13 21429888 21429888 G A XPO4 Missense_Mutation p.R112W 0.04 deleterious(0) probably_damaging(0.999) TCGA-BB-4223-01 13 23906424 23906424 G C SACS Missense_Mutation p.S3864C 0.05 probably_damaging(0.995) TCGA-BB-4223-01 13 43930093 43930093 G A ENOX1 Missense_Mutation p.S262L 0.06 deleterious(0) probably_damaging(0.994) TCGA-BB-4223-01 14 102452268 102452268 G A DYNC1H1 Missense_Mutation p.R569Q 0.58 probably_damaging(0.972) TCGA-BB-4223-01 14 38295499 38295499 C G TTC6 Missense_Mutation p.L1692V 0.04 deleterious(0) probably_damaging(0.999) TCGA-BB-4223-01 14 62547795 62547795 G A SYT16 Missense_Mutation p.V413I 0.42 tolerated(0.35) benign(0.013) TCGA-BB-4223-01 14 90870274 90870274 G A CALM1 Missense_Mutation p.E83K 0.59 deleterious_low_confidence(0.03) benign(0.055) TCGA-BB-4223-01 15 31218129 31218129 C T FAN1 Silent p.S825S 0.07 TCGA-BB-4223-01 15 41864735 41864735 C T TYRO3 Silent p.L616L 0.04 TCGA-BB-4223-01 15 42457948 42457948 C G VPS39 Missense_Mutation p.E583Q 0.05 tolerated(0.3) benign(0.015) TCGA-BB-4223-01 15 45898619 45898619 G C BLOC1S6 Missense_Mutation p.K142N 0.04 tolerated(0.1) possibly_damaging(0.747) TCGA-BB-4223-01 15 56387891 56387891 G A RFX7 Nonsense_Mutation p.Q679* 0.05 TCGA-BB-4223-01 15 63972741 63972741 C T HERC1 Missense_Mutation p.G2154R 0.05 probably_damaging(0.986) TCGA-BB-4223-01 15 72668353 72668353 G A HEXA 5'UTR 0.06 TCGA-BB-4223-01 15 74425126 74425126 T G ISLR2 Missense_Mutation p.W11G 0.39 tolerated(0.08) possibly_damaging(0.901) TCGA-BB-4223-01 15 90210857 90210857 C T PLIN1 Silent p.E313E 0.09 TCGA-BB-4223-01 16 29853148 29853148 G A MVP Missense_Mutation p.E475K 0.05 tolerated(0.32) benign(0.025) TCGA-BB-4223-01 16 30727497 30727497 C G SRCAP Silent p.L868L 0.06 TCGA-BB-4223-01 16 69184786 69184786 C T CIRH1A Silent p.L327L 0.05 TCGA-BB-4223-01 16 75203689 75203689 C T ZFP1 Silent p.L227L 0.31 TCGA-BB-4223-01 16 75579249 75579249 C T TMEM231 Splice_Site p.X223_splice 0.32 TCGA-BB-4223-01 16 81045655 81045655 G A CENPN Silent p.Q37Q 0.37 TCGA-BB-4223-01 16 84211375 84211375 C G DNAAF1 Silent p.V702V 0.41 TCGA-BB-4223-01 17 29226242 29226242 G A TEFM Missense_Mutation p.S343L 0.03 deleterious(0.01) probably_damaging(0.998) TCGA-BB-4223-01 17 38855880 38855880 C T KRT24 Missense_Mutation p.E393K 0.05 deleterious(0.05) probably_damaging(1) TCGA-BB-4223-01 17 46152376 46152376 C G CBX1 Silent p.L135L 0.04 TCGA-BB-4223-01 17 56573327 56573327 C T MTMR4 Missense_Mutation p.E726K 0.05 tolerated_low_confidence(0.33) benign(0.027) TCGA-BB-4223-01 17 57270903 57270903 G A PRR11 Missense_Mutation p.M151I 0.05 tolerated(0.29) benign(0.004) TCGA-BB-4223-01 17 686565 686566 - G RNMTL1 Frame_Shift_Ins 0.22 TCGA-BB-4223-01 17 74287166 74287166 C T QRICH2 Missense_Mutation p.M1048I 0.04 tolerated(0.39) benign(0.018) TCGA-BB-4223-01 17 74721741 74721741 G A JMJD6 Missense_Mutation p.S109L 0.04 deleterious(0) possibly_damaging(0.58) TCGA-BB-4223-01 17 7557557 7557557 C G ATP1B2 Silent p.V178V 0.35 TCGA-BB-4223-01 17 76459075 76459075 C G DNAH17 Missense_Mutation p.E2995Q 0.08 possibly_damaging(0.607) TCGA-BB-4223-01 17 78092121 78092121 G C GAA Missense_Mutation p.G871R 0.04 tolerated(0.08) benign(0.153) TCGA-BB-4223-01 17 8077810 8077810 C A TMEM107 Intron 0.06 TCGA-BB-4223-01 18 3879505 3879505 G A DLGAP1 Silent p.R188R 0.22 TCGA-BB-4223-01 18 580886 580886 G T CETN1 Nonsense_Mutation p.E160* 0.18 TCGA-BB-4223-01 18 72180810 72180810 G A CNDP2 Silent p.K253K 0.18 TCGA-BB-4223-01 19 10227615 10227615 C T EIF3G Silent p.Q152Q 0.03 TCGA-BB-4223-01 19 13941729 13941729 C G ZSWIM4 Missense_Mutation p.F945L 0.03 deleterious(0) unknown(0) TCGA-BB-4223-01 19 14675667 14675667 C T TECR Missense_Mutation p.P187S 0.04 deleterious(0.01) possibly_damaging(0.861) TCGA-BB-4223-01 19 15233935 15233935 G C ILVBL Missense_Mutation p.L153V 0.04 tolerated(0.07) possibly_damaging(0.629) TCGA-BB-4223-01 19 15375245 15375245 G C BRD4 Missense_Mutation p.I394M 0.04 possibly_damaging(0.639) TCGA-BB-4223-01 19 19656685 19656685 C T CILP2 Nonsense_Mutation p.R1111* 0.20 TCGA-BB-4223-01 19 2255319 2255319 G C JSRP1 5'UTR 0.04 TCGA-BB-4223-01 19 23544861 23544861 G A ZNF91 Missense_Mutation p.S307L 0.03 deleterious(0.01) benign(0.307) TCGA-BB-4223-01 19 39914871 39914871 C T PLEKHG2 Missense_Mutation p.S1033L 0.03 tolerated_low_confidence(0.63) benign(0.001) TCGA-BB-4223-01 19 46627533 46627533 C T IGFL3 Missense_Mutation p.G24E 0.06 tolerated(0.79) benign(0.402) TCGA-BB-4223-01 19 47951487 47951487 C G SLC8A2 Missense_Mutation p.E448Q 0.04 deleterious(0.02) possibly_damaging(0.838) TCGA-BB-4223-01 19 48342644 48342644 C G CRX Missense_Mutation p.P107R 0.04 deleterious(0.02) benign(0.269) TCGA-BB-4223-01 19 49636556 49636556 G C PPFIA3 Missense_Mutation p.Q363H 0.04 deleterious(0) possibly_damaging(0.471) TCGA-BB-4223-01 19 51506440 51506440 C T KLK9 Missense_Mutation p.R227K 0.30 tolerated(1) benign(0.003) TCGA-BB-4223-01 19 51955701 51955701 G A SIGLEC8 Nonsense_Mutation p.R478* 0.22 TCGA-BB-4223-01 19 52033951 52033951 G C SIGLEC6 Missense_Mutation p.I230M 0.03 deleterious(0) possibly_damaging(0.824) TCGA-BB-4223-01 19 52825764 52825764 C G ZNF480 Missense_Mutation p.H421D 0.04 deleterious(0) possibly_damaging(0.86) TCGA-BB-4223-01 19 5711832 5711832 C G LONP1 Missense_Mutation p.E274Q 0.03 tolerated(0.09) benign(0.3) TCGA-BB-4223-01 19 58427868 58427868 C G ZNF417 5'UTR 0.08 TCGA-BB-4223-01 19 6743836 6743836 C T TRIP10 Nonsense_Mutation p.Q211* 0.04 TCGA-BB-4223-01 19 8138080 8138080 C G FBN3 Missense_Mutation p.D2602H 0.27 deleterious(0) probably_damaging(0.961) TCGA-BB-4223-01 1 10715871 10715871 C T CASZ1 Splice_Site p.X501_splice 0.04 TCGA-BB-4223-01 1 149859462 149859462 G A HIST2H2AB Missense_Mutation p.S2L 0.04 deleterious_low_confidence(0.04) benign(0.184) TCGA-BB-4223-01 1 151204833 151204833 G A PIP5K1A Missense_Mutation p.D160N 0.03 deleterious(0) benign(0.285) TCGA-BB-4223-01 1 152083217 152083217 C G TCHH Missense_Mutation p.E826Q 0.03 unknown(0) TCGA-BB-4223-01 1 155327111 155327111 C T ASH1L Missense_Mutation p.E2351K 0.03 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BB-4223-01 1 155448995 155448995 C G ASH1L Missense_Mutation p.K1222N 0.28 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-BB-4223-01 1 155449016 155449016 C G ASH1L Missense_Mutation p.E1215D 0.25 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-BB-4223-01 1 155449680 155449680 C G ASH1L Missense_Mutation p.R994T 0.25 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BB-4223-01 1 155449745 155449745 C G ASH1L Missense_Mutation p.K972N 0.32 tolerated_low_confidence(0.15) possibly_damaging(0.888) TCGA-BB-4223-01 1 155449774 155449774 C G ASH1L Missense_Mutation p.E963Q 0.33 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-BB-4223-01 1 156142792 156142792 G A SEMA4A Missense_Mutation p.G437E 0.08 deleterious(0) probably_damaging(0.992) TCGA-BB-4223-01 1 159002440 159002440 C G IFI16 Missense_Mutation p.Q430E 0.05 tolerated(0.25) benign(0.34) TCGA-BB-4223-01 1 160128899 160128899 C G ATP1A4 Silent p.L211L 0.03 TCGA-BB-4223-01 1 160147443 160147443 G A ATP1A4 Missense_Mutation p.G909R 0.29 deleterious(0.03) probably_damaging(1) TCGA-BB-4223-01 1 161487962 161487962 C T FCGR2A 3'UTR 0.07 TCGA-BB-4223-01 1 1756910 1756910 C T GNB1 5'UTR 0.06 TCGA-BB-4223-01 1 176993782 176993782 G C ASTN1 Missense_Mutation p.H403D 0.06 tolerated(0.08) benign(0.086) TCGA-BB-4223-01 1 197072981 197072981 T A ASPM Missense_Mutation p.Q1800H 0.39 tolerated(0.06) benign(0.072) TCGA-BB-4223-01 1 206856279 206856279 C G MAPKAPK2 5'Flank 0.04 TCGA-BB-4223-01 1 2080336 2080336 G T PRKCZ Missense_Mutation p.K220N 0.34 tolerated(0.4) benign(0.004) TCGA-BB-4223-01 1 211842543 211842543 G A NEK2 Silent p.S299S 0.04 TCGA-BB-4223-01 1 229462743 229462743 C A CCSAP Silent p.V126V 0.30 TCGA-BB-4223-01 1 235972988 235972988 C G LYST Missense_Mutation p.R377T 0.04 tolerated(0.08) probably_damaging(0.985) TCGA-BB-4223-01 1 248525533 248525533 G A OR2T4 Silent p.L217L 0.04 TCGA-BB-4223-01 1 29029013 29029013 C G GMEB1 Nonsense_Mutation p.S231* 0.05 TCGA-BB-4223-01 1 36226454 36226454 C T CLSPN Missense_Mutation p.M356I 0.04 tolerated(0.23) benign(0.001) TCGA-BB-4223-01 1 36226773 36226773 C G CLSPN Missense_Mutation p.E310Q 0.04 deleterious(0.02) possibly_damaging(0.587) TCGA-BB-4223-01 1 45250344 45250344 C T BEST4 Missense_Mutation p.E369K 0.08 deleterious(0.05) benign(0.154) TCGA-BB-4223-01 1 62908868 62908868 G A USP1 Silent p.L145L 0.04 TCGA-BB-4223-01 1 67635171 67635171 G C IL23R Missense_Mutation p.E73Q 0.04 tolerated(0.15) possibly_damaging(0.859) TCGA-BB-4223-01 1 70518708 70518708 G C LRRC7 Splice_Site p.X1333_splice 0.04 TCGA-BB-4223-01 1 76215195 76215195 G A ACADM Missense_Mutation p.G271E 0.07 deleterious(0) probably_damaging(0.99) TCGA-BB-4223-01 1 84670214 84670214 G A PRKACB Intron 0.05 TCGA-BB-4223-01 1 90178478 90178478 G C LRRC8C Missense_Mutation p.E117Q 0.03 tolerated(0.09) probably_damaging(0.998) TCGA-BB-4223-01 1 91841220 91841220 C G HFM1 Missense_Mutation p.R487T 0.03 deleterious(0) probably_damaging(1) TCGA-BB-4223-01 20 2820550 2820550 G A PCED1A Silent p.F3F 0.33 TCGA-BB-4223-01 20 3102039 3102039 A G UBOX5 Missense_Mutation p.C416R 0.38 deleterious(0.03) possibly_damaging(0.616) TCGA-BB-4223-01 20 45905248 45905248 C T ZMYND8 Silent p.L430L 0.06 TCGA-BB-4223-01 20 56099082 56099082 G A CTCFL Silent p.V60V 0.32 TCGA-BB-4223-01 21 34635244 34635244 G T IFNAR2 Silent p.A329A 0.03 TCGA-BB-4223-01 21 43557743 43557743 G A UMODL1 3'UTR 0.10 TCGA-BB-4223-01 21 45550671 45550671 G A PWP2 3'UTR 0.29 TCGA-BB-4223-01 22 26890329 26890329 G C SRRD 3'UTR 0.05 TCGA-BB-4223-01 22 26894918 26894918 G A TFIP11 Silent p.I451I 0.06 TCGA-BB-4223-01 22 32828417 32828417 G C BPIFC Missense_Mutation p.I364M 0.03 tolerated(0.35) benign(0.238) TCGA-BB-4223-01 22 38073070 38073070 G C LGALS1 Missense_Mutation p.K29N 0.07 deleterious(0) possibly_damaging(0.649) TCGA-BB-4223-01 22 39814772 39814772 G C TAB1 Missense_Mutation p.D196H 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BB-4223-01 22 42538536 42538536 T C NDUFA6-AS1 3'Flank 0.25 TCGA-BB-4223-01 22 45959062 45959062 G C FBLN1 Intron 0.07 TCGA-BB-4223-01 22 50695547 50695547 G C MAPK12 Missense_Mutation p.I130M 0.07 tolerated(0.09) possibly_damaging(0.793) TCGA-BB-4223-01 22 51237545 51237545 C T RPL23AP82 RNA 0.33 TCGA-BB-4223-01 2 105665724 105665724 G A MRPS9 Silent p.Q77Q 0.06 TCGA-BB-4223-01 2 10582007 10582007 C T ODC1 Missense_Mutation p.G321D 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-BB-4223-01 2 128186312 128186312 G A PROC Silent p.G392G 0.04 TCGA-BB-4223-01 2 130832366 130832366 G A POTEF Silent p.L893L 0.08 TCGA-BB-4223-01 2 136537915 136537915 G A UBXN4 Missense_Mutation p.E450K 0.05 tolerated(0.2) benign(0.094) TCGA-BB-4223-01 2 1497617 1497617 G A TPO Silent p.E604E 0.43 TCGA-BB-4223-01 2 161052754 161052754 G A ITGB6 Nonsense_Mutation p.Q107* 0.05 TCGA-BB-4223-01 2 176983913 176983913 G C HOXD10 Missense_Mutation p.R326P 0.04 deleterious(0) probably_damaging(0.992) TCGA-BB-4223-01 2 179569097 179569097 C G TTN Silent p.L10000L 0.04 TCGA-BB-4223-01 2 201437872 201437872 G C SGOL2 Missense_Mutation p.E935Q 0.04 tolerated(0.1) benign(0.379) TCGA-BB-4223-01 2 20240727 20240727 G A LAPTM4A Missense_Mutation p.H53Y 0.05 tolerated(0.23) benign(0.065) TCGA-BB-4223-01 2 207026644 207026644 G C EEF1B2 Intron 0.04 TCGA-BB-4223-01 2 219496958 219496958 G C PLCD4 Missense_Mutation p.E458Q 0.19 tolerated(0.17) benign(0.005) TCGA-BB-4223-01 2 220413818 220413818 C G TMEM198 Intron 0.04 TCGA-BB-4223-01 2 232393432 232393432 G A NMUR1 Silent p.F100F 0.06 TCGA-BB-4223-01 2 24033258 24033258 G C ATAD2B Missense_Mutation p.F794L 0.04 tolerated(0.21) benign(0.012) TCGA-BB-4223-01 2 28789673 28789673 G A PLB1 Missense_Mutation p.D431N 0.08 tolerated(0.37) benign(0.38) TCGA-BB-4223-01 2 37520348 37520348 C T PRKD3 Missense_Mutation p.E119K 0.42 tolerated(0.55) benign(0.066) TCGA-BB-4223-01 2 47378441 47378441 C G C2orf61 Missense_Mutation p.D119H 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-BB-4223-01 2 56599513 56599513 A G CCDC85A Missense_Mutation p.N451S 0.41 tolerated_low_confidence(0.34) benign(0.001) TCGA-BB-4223-01 2 70504580 70504580 G C PCYOX1 3'UTR 0.05 TCGA-BB-4223-01 2 73868552 73868552 G A NAT8 Silent p.I68I 0.04 TCGA-BB-4223-01 3 120408649 120408649 C G RABL3 3'UTR 0.06 TCGA-BB-4223-01 3 12660106 12660106 G C RAF1 Missense_Mutation p.Q39E 0.06 tolerated_low_confidence(0.09) benign(0.003) TCGA-BB-4223-01 3 133347312 133347312 C G TOPBP1 Missense_Mutation p.E900Q 0.09 tolerated(0.19) benign(0.077) TCGA-BB-4223-01 3 145803008 145803008 C T PLOD2 Missense_Mutation p.D394N 0.23 tolerated(0.08) possibly_damaging(0.657) TCGA-BB-4223-01 3 148583121 148583121 G C CPA3 Missense_Mutation p.L9F 0.04 tolerated(0.09) benign(0.093) TCGA-BB-4223-01 3 151475454 151475454 G C AADACL2 3'UTR 0.04 TCGA-BB-4223-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.28 deleterious(0.04) probably_damaging(0.96) TCGA-BB-4223-01 3 178984446 178984446 C T KCNMB3 Missense_Mutation p.R18H 0.17 tolerated(0.15) benign(0.056) TCGA-BB-4223-01 3 180651167 180651167 G C FXR1 Missense_Mutation p.E33Q 0.26 deleterious(0) probably_damaging(0.994) TCGA-BB-4223-01 3 184294725 184294725 G A EPHB3 Missense_Mutation p.D370N 0.06 deleterious(0) probably_damaging(0.994) TCGA-BB-4223-01 3 184801032 184801032 C G C3orf70 Missense_Mutation p.E172D 0.09 tolerated_low_confidence(0.32) benign(0.058) TCGA-BB-4223-01 3 184971683 184971683 G C EHHADH Intron 0.32 TCGA-BB-4223-01 3 186274220 186274220 C G TBCCD1 Missense_Mutation p.K279N 0.08 deleterious(0.01) benign(0.365) TCGA-BB-4223-01 3 37033799 37033799 G A EPM2AIP1 Missense_Mutation p.S257L 0.04 deleterious(0.02) probably_damaging(0.961) TCGA-BB-4223-01 3 38101288 38101288 G A DLEC1 Silent p.L206L 0.04 TCGA-BB-4223-01 3 47894525 47894525 G C MAP4 Missense_Mutation p.I1152M 0.04 deleterious(0) possibly_damaging(0.759) TCGA-BB-4223-01 3 48626388 48626388 G A COL7A1 Silent p.L785L 0.04 TCGA-BB-4223-01 3 49155175 49155175 G C USP19 Silent p.V129V 0.05 TCGA-BB-4223-01 3 50336717 50336717 C T NAT6 5'UTR 0.08 TCGA-BB-4223-01 3 50403439 50403439 C T CACNA2D2 Intron 0.38 TCGA-BB-4223-01 3 51993286 51993286 G C PCBP4 Nonsense_Mutation p.S220* 0.31 TCGA-BB-4223-01 3 5243458 5243458 C T EDEM1 Missense_Mutation p.S236F 0.38 deleterious(0) probably_damaging(0.999) TCGA-BB-4223-01 3 52446916 52446916 G C PHF7 Missense_Mutation p.K7N 0.08 deleterious_low_confidence(0) benign(0.017) TCGA-BB-4223-01 3 56667379 56667379 G C FAM208A Missense_Mutation p.S1147C 0.06 tolerated(0.06) benign(0.047) TCGA-BB-4223-01 3 64526833 64526833 G A ADAMTS9 Missense_Mutation p.T1820M 0.35 tolerated(0.16) probably_damaging(0.973) TCGA-BB-4223-01 3 97983460 97983460 C G OR5H6 Missense_Mutation p.S111C 0.28 tolerated(0.16) possibly_damaging(0.827) TCGA-BB-4223-01 4 158073943 158073943 G T GLRB Silent p.V326V 0.04 TCGA-BB-4223-01 4 17805694 17805694 T C DCAF16 Missense_Mutation p.Y24C 0.07 tolerated_low_confidence(0.08) possibly_damaging(0.878) TCGA-BB-4223-01 4 184633829 184633829 G A TRAPPC11 3'UTR 0.05 TCGA-BB-4223-01 4 186272652 186272652 G C SNX25 Missense_Mutation p.L621F 0.06 deleterious(0) probably_damaging(1) TCGA-BB-4223-01 4 514999 514999 G A PIGG Silent p.L423L 0.07 TCGA-BB-4223-01 4 5564539 5564539 C G EVC2 3'UTR 0.06 TCGA-BB-4223-01 4 73951068 73951068 C T ANKRD17 Missense_Mutation p.G2353R 0.06 benign(0.004) TCGA-BB-4223-01 4 7780519 7780519 G A AFAP1 Missense_Mutation p.P623S 0.09 tolerated(0.31) benign(0.001) TCGA-BB-4223-01 5 135391456 135391456 C A TGFBI Missense_Mutation p.P500T 0.36 tolerated(0.07) probably_damaging(1) TCGA-BB-4223-01 5 138118956 138118956 G A CTNNA1 Missense_Mutation p.E66K 0.03 deleterious(0.02) benign(0.222) TCGA-BB-4223-01 5 140563086 140563086 C T PCDHB16 Missense_Mutation p.R318C 0.06 deleterious_low_confidence(0.01) benign(0.044) TCGA-BB-4223-01 5 141059994 141059994 C G ARAP3 Missense_Mutation p.Q20H 0.04 deleterious(0) possibly_damaging(0.905) TCGA-BB-4223-01 5 167622191 167622191 C G TENM2 Missense_Mutation p.L931V 0.06 tolerated(1) benign(0.021) TCGA-BB-4223-01 5 26890572 26890572 G A CDH9 Missense_Mutation p.P452L 0.05 tolerated(0.15) probably_damaging(0.999) TCGA-BB-4223-01 5 34814701 34814701 C T RAI14 Missense_Mutation p.S292F 0.03 deleterious(0) probably_damaging(1) TCGA-BB-4223-01 5 71494638 71494638 C T MAP1B Missense_Mutation p.S1819F 0.04 possibly_damaging(0.529) TCGA-BB-4223-01 6 100901696 100901696 G C SIM1 Nonsense_Mutation p.S67* 0.32 TCGA-BB-4223-01 6 10695300 10695300 G C PAK1IP1 Missense_Mutation p.E28Q 0.29 tolerated(0.29) benign(0.025) TCGA-BB-4223-01 6 107956425 107956425 G A SOBP Missense_Mutation p.E793K 0.04 deleterious(0.01) possibly_damaging(0.748) TCGA-BB-4223-01 6 10911091 10911091 G A SYCP2L Missense_Mutation p.D303N 0.36 deleterious(0.01) possibly_damaging(0.888) TCGA-BB-4223-01 6 128291404 128291404 C T PTPRK Missense_Mutation p.D1437N 0.04 deleterious(0) probably_damaging(0.991) TCGA-BB-4223-01 6 154831248 154831248 T GG CNKSR3 Frame_Shift_Ins p.M1? 0.19 TCGA-BB-4223-01 6 155450635 155450635 C T TIAM2 Missense_Mutation p.T93M 0.06 deleterious_low_confidence(0.02) benign(0.298) TCGA-BB-4223-01 6 160222178 160222178 G C PNLDC1 Missense_Mutation p.K45N 0.04 deleterious(0) probably_damaging(0.999) TCGA-BB-4223-01 6 26158465 26158465 A T HIST1H2BD Missense_Mutation p.Q23L 0.03 deleterious_low_confidence(0.02) benign(0.252) TCGA-BB-4223-01 6 26251947 26251947 G C HIST1H2BH Missense_Mutation p.Q23H 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-BB-4223-01 6 30121707 30121707 G A TRIM10 3'UTR 0.08 TCGA-BB-4223-01 6 3154016 3154016 G A TUBB2A 3'UTR 0.31 TCGA-BB-4223-01 6 38950169 38950169 C T DNAH8 Silent p.F4077F 0.04 TCGA-BB-4223-01 6 42978724 42978724 G A PPP2R5D Missense_Mutation p.E554K 0.04 tolerated(0.05) benign(0.009) TCGA-BB-4223-01 6 43222389 43222389 C T TTBK1 Silent p.P192P 0.05 TCGA-BB-4223-01 6 44254175 44254175 C G TCTE1 Silent p.L124L 0.03 TCGA-BB-4223-01 6 44371637 44371637 A T CDC5L Missense_Mutation p.N211Y 0.49 deleterious(0) probably_damaging(0.984) TCGA-BB-4223-01 6 46673033 46673033 G A PLA2G7 Missense_Mutation p.S349L 0.05 deleterious(0.02) benign(0.3) TCGA-BB-4223-01 6 56357812 56357812 G A DST Nonsense_Mutation p.Q4201* 0.11 TCGA-BB-4223-01 6 56513371 56513371 C G DST Silent p.L306L 0.13 TCGA-BB-4223-01 6 73952217 73952217 G A KHDC1 Silent p.L81L 0.05 TCGA-BB-4223-01 6 7569567 7569567 C G DSP Missense_Mutation p.S523C 0.03 possibly_damaging(0.651) TCGA-BB-4223-01 6 7572178 7572178 G A DSP Silent p.L669L 0.05 TCGA-BB-4223-01 6 79787178 79787178 G A PHIP Missense_Mutation p.T59I 0.04 deleterious(0.01) benign(0.004) TCGA-BB-4223-01 7 100365621 100365621 C G ZAN Silent p.L1676L 0.11 TCGA-BB-4223-01 7 100732101 100732101 G C TRIM56 Missense_Mutation p.G503A 0.28 deleterious(0.05) probably_damaging(0.983) TCGA-BB-4223-01 7 104746007 104746007 C G KMT2E Missense_Mutation p.S773C 0.03 deleterious(0.01) possibly_damaging(0.7) TCGA-BB-4223-01 7 107866759 107866759 G T NRCAM Missense_Mutation p.S205Y 0.03 deleterious(0) probably_damaging(0.998) TCGA-BB-4223-01 7 111368537 111368537 C G DOCK4 Missense_Mutation p.K1898N 0.04 deleterious_low_confidence(0.04) possibly_damaging(0.878) TCGA-BB-4223-01 7 116164951 116164951 G C CAV1 5'UTR 0.34 TCGA-BB-4223-01 7 129122805 129122805 G C STRIP2 Missense_Mutation p.W724C 0.06 deleterious(0) probably_damaging(0.98) TCGA-BB-4223-01 7 137363312 137363312 G C DGKI Silent p.V199V 0.05 TCGA-BB-4223-01 7 139827294 139827294 G A KDM7A Missense_Mutation p.P217S 0.05 tolerated(0.13) benign(0.283) TCGA-BB-4223-01 7 140434447 140434447 G C BRAF Missense_Mutation p.P751A 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-BB-4223-01 7 142568658 142568658 G C EPHB6 3'UTR 0.39 TCGA-BB-4223-01 7 148702240 148702240 G A PDIA4 Silent p.F505F 0.03 TCGA-BB-4223-01 7 19765224 19765224 G T TMEM196 Silent p.L124L 0.05 TCGA-BB-4223-01 7 27169017 27169017 G C HOXA4 Missense_Mutation p.Q264E 0.04 deleterious(0) probably_damaging(0.996) TCGA-BB-4223-01 7 38424296 38424296 C T AMPH 3'UTR 0.31 TCGA-BB-4223-01 7 86825871 86825871 C T TMEM243 3'UTR 0.05 TCGA-BB-4223-01 7 91630469 91630469 A G AKAP9 Missense_Mutation p.Q413R 0.27 benign(0.009) TCGA-BB-4223-01 8 19316071 19316071 G A CSGALNACT1 Silent p.L239L 0.04 TCGA-BB-4223-01 8 24298594 24298594 C T ADAM7 5'UTR 0.22 TCGA-BB-4223-01 8 38677342 38677342 G A TACC1 Missense_Mutation p.E194K 0.03 tolerated(0.97) benign(0.001) TCGA-BB-4223-01 8 42823326 42823326 C T HOOK3 Missense_Mutation p.A364V 0.05 tolerated(0.58) benign(0.211) TCGA-BB-4223-01 8 53079543 53079543 G A ST18 Missense_Mutation p.S358L 0.47 tolerated(0.09) benign(0.033) TCGA-BB-4223-01 8 81733769 81733769 G C ZNF704 Missense_Mutation p.Q21E 0.03 tolerated_low_confidence(0.05) benign(0.053) TCGA-BB-4223-01 8 94934633 94934633 C T PDP1 Nonsense_Mutation p.Q141* 0.03 TCGA-BB-4223-01 9 113275356 113275356 C T SVEP1 Missense_Mutation p.E385K 0.18 probably_damaging(0.95) TCGA-BB-4223-01 9 127639247 127639247 G C ARPC5L 3'UTR 0.09 TCGA-BB-4223-01 9 130687445 130687445 G A PIP5KL1 Silent p.F286F 0.05 TCGA-BB-4223-01 9 135357756 135357756 G A C9orf171 Silent p.Q85Q 0.05 TCGA-BB-4223-01 9 21481364 21481364 G A IFNE Silent p.L110L 0.04 TCGA-BB-4223-01 9 35751361 35751361 G C RGP1 Missense_Mutation p.E196Q 0.03 tolerated(0.09) possibly_damaging(0.817) TCGA-BB-4223-01 9 35807370 35807370 T C NPR2 Missense_Mutation p.I896T 0.11 deleterious(0) probably_damaging(0.913) TCGA-BB-4223-01 9 5920395 5920395 G A KIAA2026 Silent p.F1867F 0.03 TCGA-BB-4223-01 9 90500184 90500184 C T SPATA31E1 Missense_Mutation p.S261F 0.06 deleterious(0) benign(0.291) TCGA-BB-4223-01 X 138698572 138698572 G A MCF2 Nonsense_Mutation p.Q414* 0.05 TCGA-BB-4223-01 X 16669151 16669151 G A S100G Missense_Mutation p.E8K 0.04 deleterious(0.03) benign(0.011) TCGA-BB-4223-01 X 2947379 2947379 C G ARSH Missense_Mutation p.L431V 0.08 deleterious(0.03) benign(0.405) TCGA-BB-4223-01 X 88008677 88008677 G C CPXCR1 Missense_Mutation p.E88Q 0.75 tolerated(0.13) possibly_damaging(0.859) TCGA-BB-4224-01 10 294288 294288 G A ZMYND11 Missense_Mutation p.E414K 0.28 tolerated(0.14) probably_damaging(0.993) TCGA-BB-4224-01 10 68280411 68280411 C T CTNNA3 Missense_Mutation p.D499N 0.23 tolerated(0.14) possibly_damaging(0.543) TCGA-BB-4224-01 10 7239538 7239538 G A SFMBT2 Missense_Mutation p.P557L 0.20 deleterious(0) probably_damaging(1) TCGA-BB-4224-01 10 75279642 75279642 C T USP54 Missense_Mutation p.R864H 0.07 deleterious(0.05) possibly_damaging(0.863) TCGA-BB-4224-01 10 81056131 81056131 G A ZMIZ1 Intron 0.24 TCGA-BB-4224-01 11 114314649 114314649 C T REXO2 Silent p.H101H 0.31 TCGA-BB-4224-01 11 294141 294141 C T ATHL1 Silent p.L585L 0.26 TCGA-BB-4224-01 11 46419246 46419246 C A AMBRA1 Missense_Mutation p.E1127D 0.08 tolerated_low_confidence(0.09) benign(0.2) TCGA-BB-4224-01 11 46898081 46898081 G A LRP4 Missense_Mutation p.R1158W 0.17 deleterious(0) probably_damaging(0.957) TCGA-BB-4224-01 11 62457910 62457910 G A BSCL2 Silent p.L440L 0.20 TCGA-BB-4224-01 11 64074712 64074712 G A ESRRA Missense_Mutation p.D21N 0.25 tolerated(0.15) benign(0.148) TCGA-BB-4224-01 11 68696768 68696768 G T IGHMBP2 Missense_Mutation p.R393I 0.19 tolerated(0.06) possibly_damaging(0.701) TCGA-BB-4224-01 11 77394814 77394814 T - RSF1 Frame_Shift_Del p.K1002Nfs*18 0.22 TCGA-BB-4224-01 11 988626 988626 A T AP2A2 Silent p.P402P 0.28 TCGA-BB-4224-01 12 105150982 105150982 G A CHST11 Missense_Mutation p.E154K 0.22 deleterious(0.04) possibly_damaging(0.487) TCGA-BB-4224-01 12 108634275 108634275 C T WSCD2 Silent p.Y433Y 0.20 TCGA-BB-4224-01 12 11138842 11138842 G C TAS2R50 Silent p.L206L 0.14 TCGA-BB-4224-01 12 111744814 111744814 C T CUX2 Silent p.D316D 0.28 TCGA-BB-4224-01 12 14976229 14976229 G A C12orf60 Silent p.T120T 0.12 TCGA-BB-4224-01 12 44177513 44177513 G T IRAK4 Nonsense_Mutation p.E392* 0.36 TCGA-BB-4224-01 12 57389924 57389924 C G GPR182 Missense_Mutation p.L311V 0.02 tolerated(0.09) probably_damaging(0.919) TCGA-BB-4224-01 12 67663486 67663486 G T CAND1 5'UTR 0.14 TCGA-BB-4224-01 13 58208360 58208360 C T PCDH17 Silent p.P560P 0.32 TCGA-BB-4224-01 14 102478730 102478730 G A DYNC1H1 Missense_Mutation p.E2313K 0.37 probably_damaging(1) TCGA-BB-4224-01 14 102504839 102504839 C T DYNC1H1 Missense_Mutation p.R3651C 0.26 probably_damaging(0.953) TCGA-BB-4224-01 15 45981253 45981253 C G SQRDL Nonsense_Mutation p.S378* 0.18 TCGA-BB-4224-01 15 50223420 50223420 C T ATP8B4 Missense_Mutation p.R513Q 0.29 deleterious(0.01) possibly_damaging(0.908) TCGA-BB-4224-01 15 86283474 86283474 C T AKAP13 Missense_Mutation p.H2531Y 0.25 tolerated(0.1) benign(0.17) TCGA-BB-4224-01 16 15103580 15103580 C G PDXDC1 Missense_Mutation p.R231G 0.19 tolerated(0.14) benign(0.115) TCGA-BB-4224-01 16 24988544 24988544 T G ARHGAP17 Silent p.R64R 0.47 TCGA-BB-4224-01 16 30736322 30736322 C T SRCAP Silent p.S1859S 0.47 TCGA-BB-4224-01 16 77465453 77465453 G A ADAMTS18 Silent p.H78H 0.18 TCGA-BB-4224-01 16 81142864 81142864 T C RNU6-1191P 5'Flank 0.17 TCGA-BB-4224-01 17 29161578 29161578 G A ATAD5 Missense_Mutation p.R160H 0.25 tolerated(0.49) benign(0.001) TCGA-BB-4224-01 17 33963460 33963460 G A AP2B1 Missense_Mutation p.R419H 0.22 deleterious(0.01) possibly_damaging(0.78) TCGA-BB-4224-01 17 36002269 36002269 C G DDX52 Missense_Mutation p.K52N 0.26 tolerated(0.11) benign(0.15) TCGA-BB-4224-01 17 7256193 7256193 G A KCTD11 5'UTR 0.53 TCGA-BB-4224-01 17 7346226 7346226 C T FGF11 Intron 0.09 TCGA-BB-4224-01 17 73809222 73809222 G A UNK Missense_Mutation p.R229H 0.43 deleterious(0) probably_damaging(0.996) TCGA-BB-4224-01 17 7578192 7578193 GG - TP53 Frame_Shift_Del p.P219Lfs*2 0.37 TCGA-BB-4224-01 17 7578500 7578500 G A TP53 Nonsense_Mutation p.Q144* 0.23 TCGA-BB-4224-01 18 48190823 48190823 G C MAPK4 Missense_Mutation p.K165N 0.68 deleterious(0) probably_damaging(1) TCGA-BB-4224-01 18 64239504 64239504 A G CDH19 5'UTR 0.70 TCGA-BB-4224-01 19 14001123 14001123 C T C19orf57 Silent p.A182A 0.32 TCGA-BB-4224-01 19 41930616 41930616 C G BCKDHA 3'UTR 0.55 TCGA-BB-4224-01 19 49469837 49469837 C G FTL Intron 0.12 TCGA-BB-4224-01 19 9085379 9085379 G T MUC16 Missense_Mutation p.L2146I 0.23 unknown(0) TCGA-BB-4224-01 1 150390094 150390094 T A RPRD2 Missense_Mutation p.N76K 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BB-4224-01 1 150390095 150390095 C G RPRD2 Missense_Mutation p.L77V 0.28 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-BB-4224-01 1 152659656 152659656 G A LCE2B 3'UTR 0.26 TCGA-BB-4224-01 1 180471245 180471245 G T ACBD6 Missense_Mutation p.L53M 0.76 tolerated(0.11) possibly_damaging(0.84) TCGA-BB-4224-01 1 233275516 233275516 C G PCNXL2 Missense_Mutation p.L1201F 0.22 deleterious(0) probably_damaging(0.986) TCGA-BB-4224-01 1 27226589 27226589 C G GPATCH3 Missense_Mutation p.Q115H 0.32 tolerated(0.13) benign(0.428) TCGA-BB-4224-01 1 54275387 54275387 T C NDC1 Missense_Mutation p.M246V 0.52 deleterious(0.01) benign(0.217) TCGA-BB-4224-01 1 55078320 55078320 G T FAM151A Missense_Mutation p.F213L 0.18 tolerated(1) benign(0) TCGA-BB-4224-01 20 1638344 1638344 G A SIRPG Missense_Mutation p.S6F 0.18 deleterious(0) benign(0.03) TCGA-BB-4224-01 20 20349259 20349259 C G INSM1 Missense_Mutation p.F116L 0.39 tolerated(0.69) benign(0.153) TCGA-BB-4224-01 20 4781696 4781696 C T RASSF2 5'UTR 0.17 TCGA-BB-4224-01 22 39996588 39996588 G T CACNA1I Missense_Mutation p.G138W 0.47 deleterious(0) probably_damaging(1) TCGA-BB-4224-01 2 113675313 113675313 G C IL37 Missense_Mutation p.D123H 0.24 deleterious(0.01) probably_damaging(0.926) TCGA-BB-4224-01 2 170063539 170063539 C T LRP2 Missense_Mutation p.E2231K 0.26 possibly_damaging(0.672) TCGA-BB-4224-01 2 50464073 50464073 G C NRXN1 Missense_Mutation p.Q1174E 0.27 deleterious(0.01) benign(0.379) TCGA-BB-4224-01 3 130300633 130300633 A G COL6A6 Missense_Mutation p.E1259G 0.21 deleterious(0) possibly_damaging(0.735) TCGA-BB-4224-01 3 183911530 183911530 C T ABCF3 3'UTR 0.21 TCGA-BB-4224-01 3 195711590 195711590 G C SDHAP1 RNA 0.13 TCGA-BB-4224-01 3 41275254 41275254 C T CTNNB1 Nonsense_Mutation p.R474* 0.40 TCGA-BB-4224-01 4 121958285 121958285 A C NDNF Missense_Mutation p.Y281D 0.18 tolerated(0.21) benign(0.013) TCGA-BB-4224-01 4 156825277 156825277 T C TDO2 Splice_Site p.X47_splice 0.40 TCGA-BB-4224-01 4 56830566 56830566 C G CEP135 Missense_Mutation p.Q276E 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-BB-4224-01 4 6711285 6711285 G A MRFAP1L1 Silent p.F24F 0.36 TCGA-BB-4224-01 4 69195943 69195944 AC - YTHDC1 Frame_Shift_Del p.V403Qfs*34 0.18 TCGA-BB-4224-01 5 13817674 13817674 G T DNAH5 Missense_Mutation p.T2324K 0.13 possibly_damaging(0.728) TCGA-BB-4224-01 5 16694532 16694532 C T MYO10 Missense_Mutation p.E1250K 0.22 tolerated(0.11) probably_damaging(0.995) TCGA-BB-4224-01 5 38949505 38949505 G A RICTOR Intron 0.20 TCGA-BB-4224-01 6 151671735 151671735 C A AKAP12 Missense_Mutation p.P737T 0.27 deleterious(0.04) benign(0.013) TCGA-BB-4224-01 6 27114408 27114408 G C HIST1H2BK Missense_Mutation p.S57C 0.14 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-BB-4224-01 6 29323454 29323454 C A OR5V1 Missense_Mutation p.Q173H 0.20 tolerated(0.16) benign(0.025) TCGA-BB-4224-01 6 47254185 47254185 G T TNFRSF21 Silent p.T81T 0.24 TCGA-BB-4224-01 6 7229363 7229363 G A RREB1 Missense_Mutation p.G344D 0.35 tolerated(0.14) benign(0.127) TCGA-BB-4224-01 7 107224424 107224424 C T BCAP29 Silent p.L64L 0.26 TCGA-BB-4224-01 7 137686374 137686374 G C CREB3L2 Missense_Mutation p.D26E 0.25 tolerated(1) benign(0) TCGA-BB-4224-01 7 139060879 139060879 C T C7orf55-LUC7L2 Missense_Mutation p.P45S 0.25 deleterious(0) probably_damaging(0.992) TCGA-BB-4224-01 7 142499026 142499026 C T TRBC2 Silent p.Y101Y 0.17 TCGA-BB-4224-01 7 151254156 151254156 C T PRKAG2 3'UTR 0.32 TCGA-BB-4224-01 7 22534408 22534408 C A STEAP1B Nonsense_Mutation p.E23* 0.11 TCGA-BB-4224-01 7 48411940 48411940 C G ABCA13 Nonsense_Mutation p.S3660* 0.10 TCGA-BB-4224-01 7 5413746 5413746 C T TNRC18 Missense_Mutation p.E1057K 0.07 probably_damaging(0.994) TCGA-BB-4224-01 7 83643635 83643635 C T SEMA3A Missense_Mutation p.E234K 0.28 deleterious(0) probably_damaging(0.965) TCGA-BB-4224-01 7 88965298 88965298 C T ZNF804B Missense_Mutation p.T1001M 0.34 tolerated(0.12) benign(0.245) TCGA-BB-4224-01 8 100133755 100133755 C T VPS13B Intron 0.17 TCGA-BB-4224-01 8 110457059 110457059 G A PKHD1L1 Missense_Mutation p.R1654Q 0.26 deleterious(0.03) benign(0.079) TCGA-BB-4224-01 8 131862050 131862050 C T ADCY8 Splice_Site p.X737_splice 0.06 TCGA-BB-4224-01 8 141557665 141557665 C G AGO2 Missense_Mutation p.K550N 0.26 deleterious(0) possibly_damaging(0.689) TCGA-BB-4224-01 8 144659233 144659233 G A NAPRT1 Missense_Mutation p.P228L 0.08 tolerated(0.27) benign(0.005) TCGA-BB-4224-01 8 87460450 87460450 T A WWP1 Missense_Mutation p.L691H 0.13 deleterious(0.02) benign(0.38) TCGA-BB-4224-01 8 98900210 98900210 C T MATN2 5'UTR 0.24 TCGA-BB-4224-01 9 100845233 100845233 G A NANS Missense_Mutation p.D326N 0.15 tolerated(0.55) benign(0.005) TCGA-BB-4224-01 9 107288872 107288872 G T OR13C4 Missense_Mutation p.L207I 0.32 deleterious(0.05) probably_damaging(0.999) TCGA-BB-4224-01 9 140332687 140332687 C T ENTPD8 Silent p.S17S 0.18 TCGA-BB-4224-01 9 34371689 34371689 C T KIAA1161 Missense_Mutation p.R384Q 0.18 tolerated(0.4) benign(0.073) TCGA-BB-4224-01 9 77377269 77377269 G A TRPM6 Missense_Mutation p.L1440F 0.17 tolerated_low_confidence(0.65) benign(0.104) TCGA-BB-4224-01 9 97062822 97062822 C T ZNF169 Missense_Mutation p.R328C 0.14 deleterious(0.04) benign(0.018) TCGA-BB-4224-01 9 99521950 99521950 T A ZNF510 Missense_Mutation p.T388S 0.15 tolerated(0.43) benign(0) TCGA-BB-4224-01 X 55117016 55117016 G A PAGE2 Missense_Mutation p.E56K 0.45 tolerated(0.5) benign(0.011) TCGA-BB-4225-01 10 116057015 116057015 G A AFAP1L2 Silent p.T757T 0.22 TCGA-BB-4225-01 10 49812909 49812909 C T ARHGAP22 5'UTR 0.46 TCGA-BB-4225-01 10 74673159 74673159 G A OIT3 Missense_Mutation p.R295Q 0.28 tolerated(0.35) benign(0.023) TCGA-BB-4225-01 11 111916646 111916646 C T DLAT Silent p.I450I 0.14 TCGA-BB-4225-01 11 17426127 17426127 G A ABCC8 Silent p.F1163F 0.15 TCGA-BB-4225-01 11 62159699 62159699 C T ASRGL1 Silent p.D290D 0.48 TCGA-BB-4225-01 11 64033385 64033385 G A PLCB3 Silent p.T1021T 0.40 TCGA-BB-4225-01 11 70260656 70260656 C T CTTN Silent p.V100V 0.16 TCGA-BB-4225-01 12 104719127 104719127 G A TXNRD1 Missense_Mutation p.E410K 0.17 tolerated(0.08) benign(0.045) TCGA-BB-4225-01 12 12315147 12315147 G A LRP6 Silent p.L753L 0.06 TCGA-BB-4225-01 12 6665033 6665033 C T IFFO1 Missense_Mutation p.G55R 0.06 tolerated(0.11) probably_damaging(0.977) TCGA-BB-4225-01 12 85266897 85266897 C T SLC6A15 Missense_Mutation p.A360T 0.16 deleterious(0) probably_damaging(0.978) TCGA-BB-4225-01 15 31234209 31234209 C T MTMR10 Missense_Mutation p.E600K 0.03 tolerated(0.13) benign(0.287) TCGA-BB-4225-01 15 89450552 89450552 G A MFGE8 Silent p.A87A 0.35 TCGA-BB-4225-01 16 20430796 20430796 C T ACSM5 Intron 0.13 TCGA-BB-4225-01 16 31122691 31122691 G A BCKDK Missense_Mutation p.D306N 0.20 tolerated(0.08) benign(0.432) TCGA-BB-4225-01 16 86585794 86585794 G A MTHFSD Intron 0.59 TCGA-BB-4225-01 17 10558189 10558189 C T MYH3 Missense_Mutation p.E65K 0.22 tolerated(0.39) benign(0.176) TCGA-BB-4225-01 17 19835244 19835244 C T AKAP10 Silent p.L505L 0.12 TCGA-BB-4225-01 17 2604101 2604101 G A CLUH Silent p.F310F 0.25 TCGA-BB-4225-01 17 26851658 26851658 C T FOXN1 Silent p.G87G 0.16 TCGA-BB-4225-01 17 36491542 36491542 G A GPR179 Silent p.I446I 0.19 TCGA-BB-4225-01 17 38133088 38133088 A G GSDMA Missense_Mutation p.Q372R 0.13 tolerated(0.2) benign(0.159) TCGA-BB-4225-01 17 39122694 39122694 G A KRT39 Silent p.L139L 0.23 TCGA-BB-4225-01 17 45473259 45473259 G A EFCAB13 Missense_Mutation p.D621N 0.19 tolerated(0.4) benign(0.009) TCGA-BB-4225-01 17 67186544 67186544 C A ABCA10 Nonsense_Mutation p.E696* 0.15 TCGA-BB-4225-01 17 68129405 68129405 G A KCNJ16 Missense_Mutation p.A393T 0.16 tolerated(0.42) benign(0.001) TCGA-BB-4225-01 17 72862630 72862630 C T FDXR Missense_Mutation p.V154M 0.29 deleterious(0) probably_damaging(0.991) TCGA-BB-4225-01 17 76388715 76388715 C T PGS1 Missense_Mutation p.S101F 0.16 tolerated(0.37) benign(0.373) TCGA-BB-4225-01 18 48190638 48190638 G A MAPK4 Missense_Mutation p.V104I 0.21 tolerated(0.13) benign(0.004) TCGA-BB-4225-01 18 76753935 76753935 G A SALL3 Silent p.P648P 0.15 TCGA-BB-4225-01 19 10202783 10202783 G A C19orf66 Silent p.K227K 0.17 TCGA-BB-4225-01 19 1058700 1058700 C T ABCA7 Missense_Mutation p.L1745F 0.14 tolerated(1) benign(0.094) TCGA-BB-4225-01 19 19654523 19654523 G A CILP2 Missense_Mutation p.R390Q 0.20 tolerated(0.36) benign(0.001) TCGA-BB-4225-01 19 47856613 47856613 C T DHX34 Missense_Mutation p.S109F 0.15 deleterious(0.03) probably_damaging(0.954) TCGA-BB-4225-01 19 58350409 58350409 G A ZNF587B Missense_Mutation p.D19N 0.27 deleterious(0) probably_damaging(1) TCGA-BB-4225-01 19 58489538 58489538 A G ZNF606 3'UTR 0.22 TCGA-BB-4225-01 19 9065980 9065980 T C MUC16 Missense_Mutation p.S7156G 0.18 unknown(0) TCGA-BB-4225-01 1 110882129 110882129 C T RBM15 Silent p.L34L 0.27 TCGA-BB-4225-01 1 145473666 145473666 C G ANKRD34A Missense_Mutation p.S113W 0.24 deleterious(0) probably_damaging(0.999) TCGA-BB-4225-01 1 152382225 152382225 C T CRNN Missense_Mutation p.D445N 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-BB-4225-01 1 158226066 158226066 C T CD1A Missense_Mutation p.R200W 0.06 deleterious(0) probably_damaging(0.977) TCGA-BB-4225-01 1 161692465 161692465 G A FCRLB Translation_Start_Site p.M1? 0.25 deleterious(0.03) benign(0.004) TCGA-BB-4225-01 1 200950187 200950187 G A KIF21B Missense_Mutation p.R1294W 0.44 deleterious(0) probably_damaging(0.995) TCGA-BB-4225-01 1 217665079 217665079 C T GPATCH2 Missense_Mutation p.R407K 0.16 tolerated(0.3) possibly_damaging(0.654) TCGA-BB-4225-01 1 233270852 233270852 C T PCNXL2 Silent p.L1248L 0.21 TCGA-BB-4225-01 1 23759729 23759729 C T ASAP3 Missense_Mutation p.A722T 0.20 tolerated(0.16) benign(0.003) TCGA-BB-4225-01 1 23763755 23763755 C T ASAP3 Missense_Mutation p.E404K 0.25 tolerated(0.05) benign(0.14) TCGA-BB-4225-01 1 237895442 237895442 G A RYR2 Missense_Mutation p.E3678K 0.12 benign(0.284) TCGA-BB-4225-01 1 45475780 45475780 T C HECTD3 Missense_Mutation p.T213A 0.20 tolerated(0.17) benign(0.114) TCGA-BB-4225-01 1 46087966 46087966 C T CCDC17 Missense_Mutation p.R305H 0.24 deleterious(0.03) benign(0.134) TCGA-BB-4225-01 20 2443804 2443804 C A SNRPB Missense_Mutation p.A164S 0.28 tolerated(0.06) possibly_damaging(0.739) TCGA-BB-4225-01 20 35827572 35827572 C T RPN2 Silent p.S141S 0.04 TCGA-BB-4225-01 20 57428501 57428501 G A GNAS Missense_Mutation p.V61I 0.20 tolerated_low_confidence(1) unknown(0) TCGA-BB-4225-01 21 44841623 44841623 G T SIK1 Missense_Mutation p.Q132K 0.27 deleterious(0) probably_damaging(0.984) TCGA-BB-4225-01 22 51183225 51183225 G A ACR Missense_Mutation p.A286T 0.43 tolerated(0.08) possibly_damaging(0.656) TCGA-BB-4225-01 2 111666365 111666365 G A ACOXL Splice_Site p.X263_splice 0.21 TCGA-BB-4225-01 2 112621447 112621447 G T ANAPC1 Missense_Mutation p.S286Y 0.07 tolerated(0.06) benign(0.051) TCGA-BB-4225-01 2 167162315 167162315 C T SCN9A Missense_Mutation p.V195I 0.22 tolerated(0.09) probably_damaging(1) TCGA-BB-4225-01 2 179582457 179582457 G A TTN Missense_Mutation p.R8382C 0.11 TCGA-BB-4225-01 2 234171780 234171780 G A ATG16L1 Missense_Mutation p.G72R 0.17 tolerated(0.06) benign(0.349) TCGA-BB-4225-01 3 172165615 172165615 C T GHSR Missense_Mutation p.E197K 0.19 deleterious(0) possibly_damaging(0.903) TCGA-BB-4225-01 3 196288329 196288329 C T WDR53 Silent p.T6T 0.14 TCGA-BB-4225-01 4 79792071 79792071 C T BMP2K Missense_Mutation p.R456C 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-BB-4225-01 4 79833311 79833311 G A BMP2K 3'UTR 0.15 TCGA-BB-4225-01 5 120021719 120021719 C T PRR16 Missense_Mutation p.T54M 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BB-4225-01 5 140248820 140248820 C T PCDHA11 Silent p.F44F 0.24 TCGA-BB-4225-01 5 140595079 140595079 G A PCDHB13 Missense_Mutation p.E462K 0.12 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-BB-4225-01 5 140731948 140731948 C T PCDHGB1 Silent p.I707I 0.22 TCGA-BB-4225-01 5 41008798 41008798 G A MROH2B Missense_Mutation p.T1173I 0.30 deleterious(0) possibly_damaging(0.642) TCGA-BB-4225-01 6 143825112 143825112 G A FUCA2 Silent p.D230D 0.27 TCGA-BB-4225-01 6 169648954 169648954 C T THBS2 Missense_Mutation p.R56H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BB-4225-01 6 32372831 32372831 C G BTNL2 Missense_Mutation p.K104N 0.37 deleterious(0.02) benign(0.232) TCGA-BB-4225-01 6 74171847 74171871 CCCGCCTCCCCCGGTCTGAAGCGGG - MTO1 Intron 0.42 TCGA-BB-4225-01 7 127231136 127231136 C T ARF5 Silent p.S150S 0.06 TCGA-BB-4225-01 7 5521496 5521496 G A FBXL18 Silent p.D689D 0.29 TCGA-BB-4225-01 7 87027901 87027901 C T CROT Nonsense_Mutation p.Q622* 0.22 TCGA-BB-4225-01 8 101153320 101153320 G A FBXO43 Missense_Mutation p.R388W 0.18 deleterious(0) probably_damaging(0.949) TCGA-BB-4225-01 8 143961145 143961145 C T CYP11B1 Missense_Mutation p.A29T 0.16 tolerated(0.16) benign(0.008) TCGA-BB-4225-01 8 145946981 145946981 T G ZNF251 3'UTR 0.23 TCGA-BB-4225-01 8 25159858 25159858 C T DOCK5 Silent p.D288D 0.47 TCGA-BB-4225-01 8 27398085 27398085 A G EPHX2 Missense_Mutation p.N431D 0.32 deleterious(0.04) benign(0) TCGA-BB-4225-01 8 81897445 81897445 C T PAG1 Missense_Mutation p.A148T 0.09 tolerated(0.8) benign(0.002) TCGA-BB-4225-01 9 113168736 113168736 G A SVEP1 Silent p.A3048A 0.60 TCGA-BB-4225-01 9 138516492 138516492 C T GLT6D1 Silent p.P94P 0.21 TCGA-BB-4225-01 9 139412263 139412263 C T NOTCH1 Missense_Mutation p.C461Y 0.67 deleterious(0) probably_damaging(1) TCGA-BB-4225-01 X 106796098 106796098 C T FRMPD3 Missense_Mutation p.A228V 0.08 tolerated(0.26) benign(0.007) TCGA-BB-4225-01 X 27840150 27840150 G A MAGEB10 Missense_Mutation p.E243K 0.09 deleterious(0) probably_damaging(0.939) TCGA-BB-4225-01 Y 16952550 16952550 C T NLGN4Y Missense_Mutation p.S620L 0.40 tolerated(0.79) benign(0.037) TCGA-BB-4227-01 10 106019428 106019428 G A GSTO1 Missense_Mutation p.G80S 0.40 deleterious(0.03) possibly_damaging(0.644) TCGA-BB-4227-01 10 12070767 12070767 G C UPF2 Silent p.L374L 0.47 TCGA-BB-4227-01 10 17737124 17737124 C T STAM Silent p.L204L 0.37 TCGA-BB-4227-01 10 27793286 27793286 G A RAB18 5'UTR 0.46 TCGA-BB-4227-01 10 28151401 28151401 G A ARMC4 Missense_Mutation p.H921Y 0.35 deleterious(0.03) benign(0.142) TCGA-BB-4227-01 10 28151529 28151529 G T ARMC4 Missense_Mutation p.S878Y 0.44 deleterious(0) probably_damaging(0.98) TCGA-BB-4227-01 10 61822996 61822996 C T ANK3 Silent p.S4156S 0.46 TCGA-BB-4227-01 10 69881286 69881286 G T MYPN Nonsense_Mutation p.E31* 0.14 TCGA-BB-4227-01 10 70992626 70992626 C G HKDC1 Missense_Mutation p.F111L 0.40 tolerated(0.08) benign(0.014) TCGA-BB-4227-01 10 76928341 76928341 A G SAMD8 Silent p.V239V 0.37 TCGA-BB-4227-01 11 102233700 102233700 G C BIRC2 Missense_Mutation p.E357Q 0.04 deleterious(0.04) benign(0.052) TCGA-BB-4227-01 11 102391374 102391374 C G MMP7 3'UTR 0.12 TCGA-BB-4227-01 11 102562560 102562560 C G MMP27 Missense_Mutation p.K493N 0.05 deleterious_low_confidence(0.04) benign(0.007) TCGA-BB-4227-01 11 102592421 102592421 C G MMP8 Missense_Mutation p.W140C 0.06 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 11 102666324 102666324 G A MMP1 Missense_Mutation p.R214C 0.08 deleterious(0.02) possibly_damaging(0.458) TCGA-BB-4227-01 11 12248645 12248645 C G MICAL2 Silent p.L654L 0.69 TCGA-BB-4227-01 11 128844701 128844701 C T ARHGAP32 Silent p.L783L 0.69 TCGA-BB-4227-01 11 33182907 33182907 G C CSTF3 5'UTR 0.54 TCGA-BB-4227-01 11 46341831 46341831 C G CREB3L1 Silent p.L425L 0.28 TCGA-BB-4227-01 11 47587500 47587500 G C PTPMT1 Missense_Mutation p.E73Q 0.19 deleterious(0) probably_damaging(0.989) TCGA-BB-4227-01 11 5529368 5529368 G T UBQLN3 Missense_Mutation p.P474H 0.59 tolerated(0.55) benign(0.004) TCGA-BB-4227-01 11 56058397 56058397 T G OR8H1 Missense_Mutation p.I48L 0.27 tolerated(1) benign(0.007) TCGA-BB-4227-01 11 6191434 6191434 G A OR52B2 Silent p.V41V 0.63 TCGA-BB-4227-01 11 62445293 62445293 C T UBXN1 Missense_Mutation p.R165K 0.33 tolerated(0.92) benign(0.063) TCGA-BB-4227-01 11 6422239 6422239 A G APBB1 Missense_Mutation p.V549A 0.04 tolerated(0.17) benign(0.103) TCGA-BB-4227-01 11 64507521 64507521 G T RASGRP2 Silent p.L162L 0.11 TCGA-BB-4227-01 11 64534668 64534668 T C SF1 Silent p.G591G 0.39 TCGA-BB-4227-01 11 66026021 66026021 C T KLC2 5'UTR 0.49 TCGA-BB-4227-01 11 68777373 68777373 C G MRGPRF 5'UTR 0.04 TCGA-BB-4227-01 11 68777382 68777382 C T MRGPRF 5'UTR 0.04 TCGA-BB-4227-01 11 70332212 70332212 G T SHANK2 Missense_Mutation p.L1397M 0.07 deleterious(0.01) possibly_damaging(0.665) TCGA-BB-4227-01 11 84245714 84245714 C G DLG2 Missense_Mutation p.E140Q 0.35 tolerated_low_confidence(0.21) benign(0.422) TCGA-BB-4227-01 11 87847020 87847020 G A RAB38 3'UTR 0.61 TCGA-BB-4227-01 12 105151594 105151594 G A CHST11 3'UTR 0.35 TCGA-BB-4227-01 12 105151600 105151600 G A CHST11 3'UTR 0.39 TCGA-BB-4227-01 12 110968467 110968467 G T RAD9B Intron 0.34 TCGA-BB-4227-01 12 117217096 117217096 C T RNFT2 Silent p.I275I 0.40 TCGA-BB-4227-01 12 121756175 121756175 C T ANAPC5 Missense_Mutation p.A600T 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-BB-4227-01 12 12302048 12302048 G T LRP6 Missense_Mutation p.L1012M 0.39 tolerated(0.2) benign(0.011) TCGA-BB-4227-01 12 13221564 13221564 C T KIAA1467 Silent p.S429S 0.36 TCGA-BB-4227-01 12 132627321 132627321 C G DDX51 Missense_Mutation p.D208H 0.35 tolerated(0.12) benign(0.065) TCGA-BB-4227-01 12 133350895 133350895 C T GOLGA3 Silent p.P1385P 0.37 TCGA-BB-4227-01 12 20782961 20782980 ACTGCCAAACAAAGCCTAGG GA PDE3A In_Frame_Del p.T554_G560delinsD 0.20 TCGA-BB-4227-01 12 66603284 66603284 C T IRAK3 Missense_Mutation p.P122L 0.26 tolerated(0.05) benign(0.03) TCGA-BB-4227-01 12 75601539 75601539 G A KCNC2 Silent p.G75G 0.78 TCGA-BB-4227-01 12 97102560 97102560 C A C12orf55 Missense_Mutation p.P2235T 0.31 tolerated(0.43) benign(0.005) TCGA-BB-4227-01 14 105609974 105609974 G C JAG2 Missense_Mutation p.S1029C 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-BB-4227-01 14 24617533 24617533 G T RNF31 Nonsense_Mutation p.E136* 0.25 TCGA-BB-4227-01 14 47426688 47426688 G A MDGA2 Nonsense_Mutation p.Q660* 0.37 TCGA-BB-4227-01 14 64476717 64476717 A T SYNE2 Missense_Mutation p.L1537F 0.34 probably_damaging(0.999) TCGA-BB-4227-01 14 65008483 65008483 G C HSPA2 Missense_Mutation p.E306Q 0.33 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-BB-4227-01 14 81610641 81610641 C T TSHR Silent p.L747L 0.38 TCGA-BB-4227-01 14 89131807 89131807 C T EML5 Missense_Mutation p.D1051N 0.36 deleterious(0.02) probably_damaging(1) TCGA-BB-4227-01 14 99876510 99876510 C G SETD3 Intron 0.42 TCGA-BB-4227-01 15 22997806 22997806 G C CYFIP1 Missense_Mutation p.E1018Q 0.35 deleterious(0) possibly_damaging(0.745) TCGA-BB-4227-01 15 28211914 28211914 G A OCA2 Missense_Mutation p.L520F 0.32 tolerated(0.1) benign(0.182) TCGA-BB-4227-01 15 40268942 40268942 G A EIF2AK4 Missense_Mutation p.E716K 0.36 deleterious(0) benign(0.275) TCGA-BB-4227-01 15 42743329 42743329 G A ZNF106 Silent p.L358L 0.44 TCGA-BB-4227-01 15 42743338 42743338 G C ZNF106 Missense_Mutation p.Q355E 0.44 tolerated(0.05) probably_damaging(0.977) TCGA-BB-4227-01 15 42743875 42743875 G C ZNF106 Missense_Mutation p.H176D 0.30 deleterious(0.05) probably_damaging(0.958) TCGA-BB-4227-01 15 44856881 44856881 C T SPG11 Missense_Mutation p.E2339K 0.41 deleterious(0) possibly_damaging(0.801) TCGA-BB-4227-01 15 51233943 51233943 G C AP4E1 Missense_Mutation p.D383H 0.27 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 15 99192779 99192779 G C IGF1R 5'UTR 0.50 TCGA-BB-4227-01 16 1388988 1388988 G C BAIAP3 Missense_Mutation p.E108Q 0.36 deleterious(0.04) probably_damaging(0.997) TCGA-BB-4227-01 16 1961639 1961639 G A HS3ST6 Silent p.F296F 0.60 TCGA-BB-4227-01 16 202962 202962 C T HBZ Silent p.I18I 0.29 TCGA-BB-4227-01 16 20696551 20696551 C G ACSM1 Missense_Mutation p.E123Q 0.21 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 16 3071626 3071626 C T TNFRSF12A Silent p.F90F 0.39 TCGA-BB-4227-01 16 31153248 31153248 C G PRSS36 Missense_Mutation p.E519Q 0.33 tolerated(0.28) benign(0.1) TCGA-BB-4227-01 16 312520 312520 C G ITFG3 Silent p.L313L 0.40 TCGA-BB-4227-01 16 53260306 53260306 G C CHD9 Missense_Mutation p.R642T 0.40 probably_damaging(0.999) TCGA-BB-4227-01 16 53844097 53844097 C G FTO Missense_Mutation p.L31V 0.30 deleterious(0.05) benign(0.055) TCGA-BB-4227-01 16 57238450 57238450 G C RSPRY1 5'UTR 0.23 TCGA-BB-4227-01 16 67405001 67405001 G A LRRC36 Silent p.L450L 0.38 TCGA-BB-4227-01 16 67709325 67709325 C G GFOD2 Missense_Mutation p.Q297H 0.06 tolerated(0.11) benign(0.212) TCGA-BB-4227-01 16 67920047 67920047 C G NRN1L Missense_Mutation p.S128C 0.17 deleterious(0.04) probably_damaging(0.936) TCGA-BB-4227-01 16 68025794 68025794 G C DPEP2 Missense_Mutation p.F203L 0.32 tolerated(0.31) benign(0.4) TCGA-BB-4227-01 16 68109341 68109341 C T DUS2 Missense_Mutation p.S339L 0.40 tolerated(0.28) benign(0.003) TCGA-BB-4227-01 16 68293433 68293433 G T PLA2G15 Missense_Mutation p.C371F 0.34 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 16 72993190 72993190 G C ZFHX3 Missense_Mutation p.F285L 0.29 possibly_damaging(0.827) TCGA-BB-4227-01 16 84209596 84209596 G A DNAAF1 Missense_Mutation p.E586K 0.37 deleterious(0.01) possibly_damaging(0.559) TCGA-BB-4227-01 16 89349254 89349254 C G ANKRD11 Missense_Mutation p.K1232N 0.48 probably_damaging(0.996) TCGA-BB-4227-01 16 89349405 89349405 C T ANKRD11 Missense_Mutation p.R1182K 0.42 benign(0.001) TCGA-BB-4227-01 16 9857426 9857426 G A GRIN2A Silent p.Y1325Y 0.39 TCGA-BB-4227-01 17 1636020 1636020 G A WDR81 Missense_Mutation p.D1462N 0.36 tolerated(0.05) benign(0.16) TCGA-BB-4227-01 17 1636853 1636853 G C WDR81 Missense_Mutation p.E1508Q 0.36 tolerated(0.13) possibly_damaging(0.733) TCGA-BB-4227-01 17 26666552 26666552 C T TNFAIP1 Missense_Mutation p.S2L 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BB-4227-01 17 26897883 26897883 C T PIGS Silent p.E91E 0.03 TCGA-BB-4227-01 17 26941897 26941897 G A KIAA0100 3'UTR 0.35 TCGA-BB-4227-01 17 26965349 26965349 G A KIAA0100 Missense_Mutation p.S478F 0.38 deleterious(0) probably_damaging(0.996) TCGA-BB-4227-01 17 27613310 27613310 C G NUFIP2 Missense_Mutation p.E568Q 0.12 tolerated(0.05) benign(0.366) TCGA-BB-4227-01 17 29632227 29632227 G C EVI2B Missense_Mutation p.S134C 0.37 deleterious(0.03) benign(0.176) TCGA-BB-4227-01 17 3030534 3030534 G T OR1G1 Missense_Mutation p.F104L 0.10 tolerated(0.11) probably_damaging(0.931) TCGA-BB-4227-01 17 3101343 3101343 C T OR1A2 Silent p.F177F 0.39 TCGA-BB-4227-01 17 33679324 33679324 G C SLFN11 3'UTR 0.36 TCGA-BB-4227-01 17 3495380 3495380 C G SHPK Missense_Mutation p.D89H 0.21 tolerated(0.09) benign(0.438) TCGA-BB-4227-01 17 3495440 3495440 C G SHPK Missense_Mutation p.E69Q 0.34 tolerated(0.67) benign(0.004) TCGA-BB-4227-01 17 37199482 37199482 G C LRRC37A11P RNA 0.24 TCGA-BB-4227-01 17 37564043 37564043 C T MED1 Silent p.Q1477Q 0.21 TCGA-BB-4227-01 17 38935781 38935781 C T KRT27 Silent p.E315E 0.09 TCGA-BB-4227-01 17 39118663 39118663 G C KRT39 Missense_Mutation p.F287L 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-BB-4227-01 17 57679960 57679960 C T DHX40 Silent p.F628F 0.06 TCGA-BB-4227-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.83 TCGA-BB-4227-01 17 7623114 7623114 G A DNAH2 Nonsense_Mutation p.W21* 0.47 TCGA-BB-4227-01 17 7999833 7999833 G C ALOXE3 3'UTR 0.21 TCGA-BB-4227-01 18 20562197 20562197 C G RBBP8 Missense_Mutation p.Q149E 0.42 tolerated(0.2) benign(0.009) TCGA-BB-4227-01 18 7231387 7231387 G A LRRC30 Missense_Mutation p.R84Q 0.32 tolerated(0.69) benign(0.187) TCGA-BB-4227-01 18 77960666 77960666 G A PARD6G Silent p.I74I 0.05 TCGA-BB-4227-01 19 10469922 10469922 C G TYK2 Missense_Mutation p.E702Q 0.08 tolerated(0.36) benign(0.159) TCGA-BB-4227-01 19 1055346 1055346 C T ABCA7 Nonsense_Mutation p.Q1401* 0.19 TCGA-BB-4227-01 19 10574474 10574474 C A PDE4A Silent p.L583L 0.34 TCGA-BB-4227-01 19 16589906 16589906 G C CALR3 3'UTR 0.34 TCGA-BB-4227-01 19 17487789 17487789 C G PLVAP Silent p.L103L 0.13 TCGA-BB-4227-01 19 19356217 19356217 C T NCAN Silent p.N1196N 0.28 TCGA-BB-4227-01 19 19822035 19822035 G C ZNF14 3'UTR 0.31 TCGA-BB-4227-01 19 3542796 3542796 C G MFSD12 Missense_Mutation p.D534H 0.37 unknown(0) TCGA-BB-4227-01 19 35646421 35646421 C A FXYD5 5'UTR 0.18 TCGA-BB-4227-01 19 35758774 35758774 C G LSR 3'UTR 0.41 TCGA-BB-4227-01 19 39234625 39234625 C T CAPN12 Missense_Mutation p.D61N 0.35 tolerated(0.28) benign(0.181) TCGA-BB-4227-01 19 39898586 39898586 C T ZFP36 Silent p.F82F 0.39 TCGA-BB-4227-01 19 40902497 40902497 G C PRX Missense_Mutation p.P588A 0.30 tolerated(0.15) possibly_damaging(0.728) TCGA-BB-4227-01 19 41447266 41447266 C G AC092071.1 5'Flank 0.10 TCGA-BB-4227-01 19 44591044 44591044 G C ZNF284 Missense_Mutation p.L471F 0.47 tolerated(0.28) probably_damaging(0.985) TCGA-BB-4227-01 19 45783693 45783693 G A MARK4 Silent p.K356K 0.36 TCGA-BB-4227-01 19 47884111 47884111 C G DHX34 Silent p.V1007V 0.40 TCGA-BB-4227-01 19 49106753 49106753 C T FAM83E Missense_Mutation p.E392K 0.30 tolerated(0.06) benign(0.018) TCGA-BB-4227-01 19 50247585 50247585 C G TSKS Missense_Mutation p.E422Q 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-BB-4227-01 19 51379884 51379884 C G KLK2 Silent p.L121L 0.35 TCGA-BB-4227-01 19 52659059 52659059 G C ZNF836 Nonsense_Mutation p.S626* 0.34 TCGA-BB-4227-01 19 53643671 53643671 T C ZNF347 Missense_Mutation p.S805G 0.39 tolerated(0.34) benign(0.005) TCGA-BB-4227-01 19 53793687 53793687 C G BIRC8 5'UTR 0.13 TCGA-BB-4227-01 19 58724593 58724593 G C ZNF274 3'UTR 0.40 TCGA-BB-4227-01 19 59080894 59080894 C G MZF1 Missense_Mutation p.E214Q 0.41 tolerated(0.18) benign(0.025) TCGA-BB-4227-01 19 9453221 9453221 C G ZNF559 Missense_Mutation p.S365C 0.33 deleterious(0.01) benign(0.031) TCGA-BB-4227-01 1 100613702 100613702 G T TRMT13 Missense_Mutation p.G357V 0.33 deleterious(0) possibly_damaging(0.906) TCGA-BB-4227-01 1 110998955 110998955 G C PROK1 Missense_Mutation p.L100F 0.08 tolerated(1) benign(0.015) TCGA-BB-4227-01 1 113265703 113265703 G A FAM19A3 Missense_Mutation p.E61K 0.41 deleterious(0.01) possibly_damaging(0.836) TCGA-BB-4227-01 1 115275262 115275262 G C CSDE1 Nonsense_Mutation p.S384* 0.10 TCGA-BB-4227-01 1 117554213 117554213 C G CD101 Missense_Mutation p.L156V 0.34 deleterious(0) probably_damaging(0.91) TCGA-BB-4227-01 1 118165574 118165574 C A FAM46C Silent p.V28V 0.17 TCGA-BB-4227-01 1 120165544 120165544 G A ZNF697 Silent p.F474F 0.54 TCGA-BB-4227-01 1 145581457 145581457 G T PIAS3 Silent p.L346L 0.55 TCGA-BB-4227-01 1 145581458 145581458 C T PIAS3 Nonsense_Mutation p.Q347* 0.55 TCGA-BB-4227-01 1 150972984 150972984 G C FAM63A Silent p.V276V 0.28 TCGA-BB-4227-01 1 153516241 153516241 C G S100A4 Missense_Mutation p.K100N 0.23 deleterious(0) possibly_damaging(0.863) TCGA-BB-4227-01 1 153665640 153665640 C G NPR1 Missense_Mutation p.F1030L 0.27 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 1 155002952 155002952 C G DCST2 Silent p.L325L 0.06 TCGA-BB-4227-01 1 155295093 155295093 C G RUSC1 Intron 0.38 TCGA-BB-4227-01 1 156626846 156626846 C G BCAN Missense_Mutation p.L723V 0.25 deleterious(0) probably_damaging(0.997) TCGA-BB-4227-01 1 156713643 156713649 CTGCCTC AA HDGF Frame_Shift_Del p.E187Lfs*4 0.46 TCGA-BB-4227-01 1 158735618 158735618 G A OR6N1 Silent p.L285L 0.27 TCGA-BB-4227-01 1 161128319 161128319 G C UFC1 3'UTR 0.30 TCGA-BB-4227-01 1 16757777 16757777 C G SPATA21 Intron 0.40 TCGA-BB-4227-01 1 168281973 168281973 C T TBX19 Silent p.S360S 0.31 TCGA-BB-4227-01 1 171227160 171227160 G C FMO1 5'UTR 0.24 TCGA-BB-4227-01 1 179095631 179095631 G A ABL2 Silent p.L190L 0.26 TCGA-BB-4227-01 1 200818403 200818403 G C CAMSAP2 Missense_Mutation p.D836H 0.24 tolerated(0.11) benign(0.413) TCGA-BB-4227-01 1 202864773 202864773 C T KLHL12 Missense_Mutation p.D338N 0.28 tolerated(0.19) probably_damaging(0.923) TCGA-BB-4227-01 1 203144777 203144777 G C MYBPH Nonsense_Mutation p.S36* 0.29 TCGA-BB-4227-01 1 213032530 213032530 C G FLVCR1 Missense_Mutation p.Q246E 0.26 deleterious(0.01) possibly_damaging(0.903) TCGA-BB-4227-01 1 2160775 2160775 C T SKI Silent p.L190L 0.27 TCGA-BB-4227-01 1 222721362 222721362 G C HHIPL2 Missense_Mutation p.L9V 0.33 tolerated_low_confidence(0.55) benign(0) TCGA-BB-4227-01 1 226567800 226567800 C G PARP1 Missense_Mutation p.E456Q 0.26 deleterious(0.02) probably_damaging(0.984) TCGA-BB-4227-01 1 228113207 228113207 C T WNT9A Missense_Mutation p.E37K 0.35 tolerated(0.08) probably_damaging(0.98) TCGA-BB-4227-01 1 229478177 229478177 C T CCSAP Missense_Mutation p.M12I 0.24 deleterious(0) unknown(0) TCGA-BB-4227-01 1 235964315 235964327 TTCCCCTTGAGTG - LYST Frame_Shift_Del p.T1262* 0.17 TCGA-BB-4227-01 1 23759683 23759683 G A ASAP3 Missense_Mutation p.A737V 0.45 tolerated(0.34) benign(0.004) TCGA-BB-4227-01 1 247978846 247978846 C T OR14A16 Silent p.K62K 0.25 TCGA-BB-4227-01 1 32682865 32682865 C G TMEM234 Missense_Mutation p.G108A 0.39 deleterious(0.01) possibly_damaging(0.804) TCGA-BB-4227-01 1 33236757 33236757 C G KIAA1522 Silent p.V659V 0.44 TCGA-BB-4227-01 1 34258100 34258100 C G CSMD2 Missense_Mutation p.D452H 0.30 deleterious(0.02) probably_damaging(0.972) TCGA-BB-4227-01 1 38339682 38339682 C T INPP5B Missense_Mutation p.R645K 0.50 tolerated(1) benign(0.005) TCGA-BB-4227-01 1 40627251 40627251 G A RLF Silent p.L60L 0.44 TCGA-BB-4227-01 1 40775622 40775622 C G COL9A2 Missense_Mutation p.E278D 0.37 tolerated(0.39) benign(0.217) TCGA-BB-4227-01 1 44401322 44401322 G C ARTN 5'UTR 0.44 TCGA-BB-4227-01 1 45808853 45808853 C T TOE1 Missense_Mutation p.R338W 0.38 deleterious(0.03) benign(0.149) TCGA-BB-4227-01 1 52498359 52498359 C T KTI12 3'UTR 0.44 TCGA-BB-4227-01 1 55224213 55224213 C G PARS2 Missense_Mutation p.D208H 0.47 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 1 67109271 67109271 G A SGIP1 Missense_Mutation p.E110K 0.34 deleterious(0) probably_damaging(0.952) TCGA-BB-4227-01 1 86818601 86818601 C G ODF2L Missense_Mutation p.E612Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-BB-4227-01 20 33001680 33001680 C T ITCH Missense_Mutation p.S157L 0.43 tolerated(0.31) benign(0.003) TCGA-BB-4227-01 20 34090860 34090860 C G CEP250 Missense_Mutation p.L1555V 0.25 possibly_damaging(0.72) TCGA-BB-4227-01 20 34091370 34091370 G C CEP250 Missense_Mutation p.E1725Q 0.38 probably_damaging(0.999) TCGA-BB-4227-01 20 35155318 35155330 GAGGCCCGCAAGA - DLGAP4 Frame_Shift_Del p.E952Dfs*78 0.49 TCGA-BB-4227-01 20 35173441 35173441 G T MYL9 Nonsense_Mutation p.E52* 0.16 TCGA-BB-4227-01 20 35444081 35444081 C T SOGA1 Silent p.K588K 0.33 TCGA-BB-4227-01 20 39831571 39831571 C G ZHX3 Missense_Mutation p.E662D 0.35 deleterious(0.04) probably_damaging(0.968) TCGA-BB-4227-01 20 42086714 42086714 G C SRSF6 Missense_Mutation p.R14P 0.39 deleterious(0) probably_damaging(0.995) TCGA-BB-4227-01 20 51871400 51871400 G C TSHZ2 Missense_Mutation p.R468T 0.37 tolerated(0.27) benign(0.025) TCGA-BB-4227-01 21 33371383 33371383 G C HUNK Missense_Mutation p.Q677H 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BB-4227-01 21 35467896 35467896 C G SLC5A3 Silent p.L133L 0.35 TCGA-BB-4227-01 21 43531075 43531075 C T UMODL1 Silent p.L581L 0.31 TCGA-BB-4227-01 21 44324239 44324239 G C NDUFV3 Missense_Mutation p.D373H 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-BB-4227-01 22 18979430 18979430 G C DGCR5 RNA 0.40 TCGA-BB-4227-01 22 19119070 19119070 T G TSSK2 Missense_Mutation p.V53G 0.44 deleterious(0) benign(0.027) TCGA-BB-4227-01 22 22317203 22317203 C G TOP3B Missense_Mutation p.D423H 0.37 deleterious(0) probably_damaging(0.995) TCGA-BB-4227-01 22 24483645 24483645 G A CABIN1 Silent p.L1168L 0.45 TCGA-BB-4227-01 22 32590359 32590359 C G RFPL2 Missense_Mutation p.E80Q 0.40 tolerated_low_confidence(0.12) benign(0.18) TCGA-BB-4227-01 22 37637674 37637674 G A RAC2 Silent p.L20L 0.41 TCGA-BB-4227-01 22 41832490 41832490 C G TOB2 Missense_Mutation p.G287A 0.52 tolerated(0.49) benign(0.005) TCGA-BB-4227-01 22 50854547 50854547 G A PPP6R2 Silent p.Q193Q 0.10 TCGA-BB-4227-01 2 105912815 105912815 G A TGFBRAP1 Nonsense_Mutation p.Q346* 0.36 TCGA-BB-4227-01 2 109103017 109103017 G A GCC2 Silent p.L1281L 0.39 TCGA-BB-4227-01 2 112526865 112526865 C T ANAPC1 3'UTR 0.41 TCGA-BB-4227-01 2 113780314 113780314 G C IL36B Silent p.L144L 0.43 TCGA-BB-4227-01 2 11955216 11955216 A G LPIN1 Missense_Mutation p.N800S 0.31 deleterious(0) probably_damaging(0.986) TCGA-BB-4227-01 2 120128369 120128369 G A DBI Missense_Mutation p.E122K 0.35 tolerated(0.61) benign(0.055) TCGA-BB-4227-01 2 128038127 128038127 C G ERCC3 Missense_Mutation p.D475H 0.26 deleterious(0.01) probably_damaging(0.926) TCGA-BB-4227-01 2 133402856 133402856 T G GPR39 Missense_Mutation p.S347A 0.25 deleterious(0.02) probably_damaging(0.978) TCGA-BB-4227-01 2 135744048 135744048 C G MAP3K19 Missense_Mutation p.Q798H 0.23 deleterious(0.02) benign(0.086) TCGA-BB-4227-01 2 143797996 143797996 G A KYNU Splice_Site p.X348_splice 0.31 TCGA-BB-4227-01 2 169788945 169788945 A G ABCB11 Missense_Mutation p.F1052S 0.42 deleterious(0) probably_damaging(0.99) TCGA-BB-4227-01 2 169792772 169792772 G C ABCB11 Missense_Mutation p.R928G 0.36 deleterious(0) benign(0.175) TCGA-BB-4227-01 2 173429336 173429336 C G PDK1 Silent p.V172V 0.31 TCGA-BB-4227-01 2 178482268 178482268 C G TTC30A Missense_Mutation p.E388Q 0.44 deleterious(0.03) possibly_damaging(0.821) TCGA-BB-4227-01 2 179392320 179392320 C T TTN Missense_Mutation p.E35845K 0.50 TCGA-BB-4227-01 2 179458787 179458787 C G TTN Missense_Mutation p.E19445Q 0.34 TCGA-BB-4227-01 2 182400374 182400374 G C ITGA4 3'UTR 0.52 TCGA-BB-4227-01 2 191362379 191362379 C G MFSD6 Silent p.L702L 0.56 TCGA-BB-4227-01 2 197791418 197791418 G C PGAP1 5'UTR 0.65 TCGA-BB-4227-01 2 20113939 20113939 G A WDR35 Missense_Mutation p.S1085L 0.35 deleterious(0) probably_damaging(0.989) TCGA-BB-4227-01 2 21232316 21232316 G T APOB Missense_Mutation p.A2475D 0.20 benign(0.002) TCGA-BB-4227-01 2 32476577 32476577 G A NLRC4 Missense_Mutation p.P119L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-BB-4227-01 2 32476659 32476659 G C NLRC4 Missense_Mutation p.Q92E 0.34 deleterious(0.05) benign(0.374) TCGA-BB-4227-01 2 32983539 32983539 G C TTC27 Missense_Mutation p.E545Q 0.35 tolerated(0.47) benign(0.011) TCGA-BB-4227-01 2 38893363 38893363 G A GALM Silent p.E20E 0.26 TCGA-BB-4227-01 2 62067353 62067353 G A FAM161A Silent p.I262I 0.35 TCGA-BB-4227-01 2 87085532 87085533 - T CD8B Frame_Shift_Ins p.H17Qfs*28 0.27 TCGA-BB-4227-01 2 96260159 96260159 G C TRIM43 Missense_Mutation p.E130Q 0.40 deleterious(0.01) probably_damaging(0.965) TCGA-BB-4227-01 2 97749505 97749505 T C FAHD2B Missense_Mutation p.N311S 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-BB-4227-01 3 122474119 122474119 C G HSPBAP1 Silent p.L243L 0.24 TCGA-BB-4227-01 3 126219702 126219702 G A UROC1 Silent p.H387H 0.38 TCGA-BB-4227-01 3 126260987 126260987 A T CHST13 Missense_Mutation p.R198W 0.42 deleterious(0) possibly_damaging(0.905) TCGA-BB-4227-01 3 12777058 12777058 C A TMEM40 Silent p.L226L 0.10 TCGA-BB-4227-01 3 132345633 132345633 C G ACAD11 Missense_Mutation p.D367H 0.27 tolerated(0.14) benign(0.027) TCGA-BB-4227-01 3 13670672 13670672 G T FBLN2 Nonsense_Mutation p.E908* 0.60 TCGA-BB-4227-01 3 137960622 137960622 C T ARMC8 Intron 0.24 TCGA-BB-4227-01 3 141161524 141161524 C G ZBTB38 Silent p.V98V 0.11 TCGA-BB-4227-01 3 151072985 151072985 C G MED12L Silent p.L790L 0.32 TCGA-BB-4227-01 3 151078367 151078367 C T MED12L Silent p.L942L 0.28 TCGA-BB-4227-01 3 151155107 151155107 C G IGSF10 Missense_Mutation p.R2414S 0.31 deleterious(0) probably_damaging(0.938) TCGA-BB-4227-01 3 151155347 151155347 C G IGSF10 Silent p.L2334L 0.26 TCGA-BB-4227-01 3 159995223 159995223 G C IFT80 Missense_Mutation p.S657C 0.27 tolerated(0.08) benign(0.04) TCGA-BB-4227-01 3 165548470 165548470 C T BCHE Missense_Mutation p.E118K 0.26 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 3 172070742 172070742 G A FNDC3B Silent p.L888L 0.26 TCGA-BB-4227-01 3 183493896 183493896 C T YEATS2 Silent p.L854L 0.28 TCGA-BB-4227-01 3 184074967 184074967 C T CLCN2 Intron 0.29 TCGA-BB-4227-01 3 184298534 184298534 C T EPHB3 Silent p.I802I 0.16 TCGA-BB-4227-01 3 184298946 184298946 C T EPHB3 Nonsense_Mutation p.Q909* 0.28 TCGA-BB-4227-01 3 185209541 185209541 C G TMEM41A Missense_Mutation p.L193F 0.28 deleterious(0.01) probably_damaging(1) TCGA-BB-4227-01 3 195243706 195243706 T A PPP1R2 Missense_Mutation p.L202F 0.53 tolerated_low_confidence(0.29) benign(0) TCGA-BB-4227-01 3 196554193 196554193 G C PAK2 Missense_Mutation p.E493Q 0.33 tolerated(0.18) benign(0.156) TCGA-BB-4227-01 3 197349060 197349060 C T AC024560.3 Intron 0.43 TCGA-BB-4227-01 3 46759219 46759219 C G PRSS50 Silent p.L32L 0.75 TCGA-BB-4227-01 3 52273062 52273062 C T TWF2 5'UTR 0.75 TCGA-BB-4227-01 3 57743444 57743444 C T SLMAP Silent p.V22V 0.71 TCGA-BB-4227-01 3 66432706 66432706 C G LRIG1 Missense_Mutation p.E870Q 0.61 tolerated(0.07) benign(0.04) TCGA-BB-4227-01 3 88040493 88040493 G C HTR1F Missense_Mutation p.L198F 0.76 deleterious(0.01) probably_damaging(1) TCGA-BB-4227-01 3 98518387 98518387 G A DCBLD2 Silent p.L719L 0.21 TCGA-BB-4227-01 4 158254442 158254442 G C GRIA2 Missense_Mutation p.Q364H 0.57 tolerated(0.22) possibly_damaging(0.484) TCGA-BB-4227-01 4 25671434 25671434 C T SLC34A2 Silent p.I267I 0.65 TCGA-BB-4227-01 4 36130348 36130348 G C ARAP2 Missense_Mutation p.I1149M 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-BB-4227-01 4 39929692 39929692 G A PDS5A Silent p.F77F 0.50 TCGA-BB-4227-01 4 40356015 40356015 G C CHRNA9 Silent p.T306T 0.21 TCGA-BB-4227-01 4 71835700 71835700 C T MOB1B Silent p.F83F 0.08 TCGA-BB-4227-01 5 123974878 123974878 G C ZNF608 Missense_Mutation p.Q1494E 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-BB-4227-01 5 134060674 134060674 G A SEC24A Missense_Mutation p.E1058K 0.32 deleterious(0.01) benign(0.009) TCGA-BB-4227-01 5 140736827 140736827 C T PCDHGA4 Missense_Mutation p.S687L 0.41 deleterious_low_confidence(0.01) benign(0.117) TCGA-BB-4227-01 5 153433244 153433244 G C MFAP3 Missense_Mutation p.D354H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-BB-4227-01 5 160049574 160049574 C G ATP10B Missense_Mutation p.D547H 0.40 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 5 160071214 160071214 C T ATP10B Missense_Mutation p.E267K 0.30 deleterious(0.02) probably_damaging(0.986) TCGA-BB-4227-01 5 41904484 41904484 C G C5orf51 Silent p.V5V 0.36 TCGA-BB-4227-01 5 41934106 41934106 C G FBXO4 Missense_Mutation p.I235M 0.18 deleterious(0.01) possibly_damaging(0.569) TCGA-BB-4227-01 6 105281023 105281023 C T HACE1 Missense_Mutation p.R143Q 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-BB-4227-01 6 10556812 10556812 C T GCNT2 Intron 0.61 TCGA-BB-4227-01 6 108616315 108616315 T C LACE1 Missense_Mutation p.L11P 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.577) TCGA-BB-4227-01 6 137540429 137540429 C G IFNGR1 Missense_Mutation p.Q12H 0.39 deleterious(0.04) probably_damaging(0.921) TCGA-BB-4227-01 6 142689043 142689043 C G GPR126 Missense_Mutation p.I147M 0.31 tolerated(0.1) possibly_damaging(0.622) TCGA-BB-4227-01 6 149983190 149983190 G C LATS1 Missense_Mutation p.S1023C 0.11 deleterious(0.05) benign(0.001) TCGA-BB-4227-01 6 150001095 150001095 C G LATS1 Missense_Mutation p.D837H 0.36 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 6 153311053 153311053 C G MTRF1L Missense_Mutation p.E374Q 0.33 deleterious(0.03) possibly_damaging(0.501) TCGA-BB-4227-01 6 25862469 25862469 G A SLC17A3 Missense_Mutation p.P99S 0.56 tolerated(0.43) benign(0.001) TCGA-BB-4227-01 6 26104510 26104511 - AGC HIST1H4C 3'UTR 0.56 TCGA-BB-4227-01 6 27925541 27925541 G A OR2B6 Missense_Mutation p.D175N 0.56 tolerated(0.14) benign(0.168) TCGA-BB-4227-01 6 30624384 30624384 G C DHX16 Silent p.L767L 0.41 TCGA-BB-4227-01 6 31915793 31915793 T A CFB Missense_Mutation p.S780T 0.41 deleterious(0) probably_damaging(0.915) TCGA-BB-4227-01 6 33272808 33272808 G A TAPBP Missense_Mutation p.P276S 0.42 deleterious(0.04) benign(0.445) TCGA-BB-4227-01 6 34835329 34835329 G A UHRF1BP1 Silent p.E1218E 0.31 TCGA-BB-4227-01 6 35773513 35773513 G A LHFPL5 Silent p.S22S 0.19 TCGA-BB-4227-01 6 43307216 43307216 G C ZNF318 Nonsense_Mutation p.S1507* 0.31 TCGA-BB-4227-01 6 54792428 54792428 C A FAM83B Nonsense_Mutation p.Y244* 0.34 TCGA-BB-4227-01 6 73951446 73951446 C G KHDC1 Missense_Mutation p.E174Q 0.45 tolerated(0.12) possibly_damaging(0.475) TCGA-BB-4227-01 6 83921771 83921771 G A ME1 Missense_Mutation p.P531S 0.36 deleterious(0) probably_damaging(0.956) TCGA-BB-4227-01 6 91228236 91228236 C G MAP3K7 Missense_Mutation p.E524Q 0.26 tolerated(0.2) benign(0.071) TCGA-BB-4227-01 7 100087172 100087172 G A NYAP1 Missense_Mutation p.A610T 0.26 tolerated(0.25) benign(0.003) TCGA-BB-4227-01 7 100486349 100486349 C T UFSP1 3'UTR 0.17 TCGA-BB-4227-01 7 100679095 100679095 G C MUC17 Silent p.P1466P 0.28 TCGA-BB-4227-01 7 107601753 107601753 C T LAMB1 Silent p.P669P 0.13 TCGA-BB-4227-01 7 123109372 123109372 T - IQUB Frame_Shift_Del p.I493Sfs*15 0.19 TCGA-BB-4227-01 7 134576340 134576340 C G CALD1 Intron 0.50 TCGA-BB-4227-01 7 142120047 142120047 G C TRBV7-7 Silent p.L40L 0.34 TCGA-BB-4227-01 7 143826410 143826410 G A OR2A14 Missense_Mutation p.D69N 0.35 deleterious(0.01) possibly_damaging(0.588) TCGA-BB-4227-01 7 150648119 150648119 G A KCNH2 Missense_Mutation p.R679W 0.44 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 7 151711769 151711769 C G GALNTL5 Missense_Mutation p.S356C 0.37 deleterious(0) probably_damaging(0.982) TCGA-BB-4227-01 7 158823439 158823439 C G VIPR2 Silent p.P395P 0.33 TCGA-BB-4227-01 7 30492447 30492447 C T NOD1 Missense_Mutation p.E196K 0.75 deleterious(0) probably_damaging(0.996) TCGA-BB-4227-01 7 5112576 5112576 G C RBAK-RBAKDN 3'UTR 0.24 TCGA-BB-4227-01 7 552064 552064 C G PDGFA Silent p.L63L 0.26 TCGA-BB-4227-01 7 6029573 6029573 G C PMS2 Missense_Mutation p.I334M 0.51 deleterious(0) possibly_damaging(0.852) TCGA-BB-4227-01 7 70227855 70227855 G T AUTS2 Splice_Site p.X248_splice 0.16 TCGA-BB-4227-01 7 98988657 98988657 G A ARPC1B Silent p.G214G 0.25 TCGA-BB-4227-01 7 99097680 99097680 C T ZNF394 Missense_Mutation p.D13N 0.53 tolerated_low_confidence(0.2) benign(0) TCGA-BB-4227-01 8 107782023 107782023 C T ABRA Silent p.E132E 0.29 TCGA-BB-4227-01 8 110980590 110980590 G A KCNV1 Silent p.F410F 0.24 TCGA-BB-4227-01 8 126445719 126445719 G A TRIB1 Missense_Mutation p.R174Q 0.32 tolerated(0.33) benign(0.108) TCGA-BB-4227-01 8 144902849 144902849 G C PUF60 Nonsense_Mutation p.S112* 0.25 TCGA-BB-4227-01 8 144990596 144990596 C G PLEC Missense_Mutation p.E4602Q 0.26 probably_damaging(0.997) TCGA-BB-4227-01 8 145052088 145052088 G C PARP10 Missense_Mutation p.F906L 0.14 deleterious(0) possibly_damaging(0.864) TCGA-BB-4227-01 8 145748100 145748100 T C LRRC24 Missense_Mutation p.K434R 0.14 tolerated(0.1) probably_damaging(0.998) TCGA-BB-4227-01 8 145831062 145831062 C G ARHGAP39 5'UTR 0.18 TCGA-BB-4227-01 8 17228648 17228648 G C MTMR7 Missense_Mutation p.L70V 0.06 deleterious(0.01) benign(0.028) TCGA-BB-4227-01 8 17613105 17613105 G A MTUS1 Missense_Mutation p.S71F 0.07 tolerated(0.06) benign(0.056) TCGA-BB-4227-01 8 41545690 41545690 G C ANK1 Silent p.L1455L 0.62 TCGA-BB-4227-01 8 59522253 59522253 T C NSMAF Silent p.K230K 0.64 TCGA-BB-4227-01 8 68208741 68208741 G A ARFGEF1 Silent p.L188L 0.30 TCGA-BB-4227-01 8 70539481 70539481 G C SULF1 Missense_Mutation p.E629D 0.10 tolerated(1) benign(0.006) TCGA-BB-4227-01 8 95653588 95653588 C T ESRP1 Silent p.I14I 0.10 TCGA-BB-4227-01 9 124530800 124530800 C G DAB2IP Missense_Mutation p.S568C 0.04 deleterious(0) probably_damaging(1) TCGA-BB-4227-01 9 125391590 125391590 T G OR1B1 Silent p.L75L 0.83 TCGA-BB-4227-01 9 135266215 135266215 C G TTF1 Missense_Mutation p.R664T 0.81 tolerated(0.4) benign(0.18) TCGA-BB-4227-01 9 140114909 140114909 C T RNF208 Silent p.R252R 0.63 TCGA-BB-4227-01 9 140249213 140249213 T C EXD3 Missense_Mutation p.N257S 0.87 deleterious(0.01) benign(0.188) TCGA-BB-4227-01 9 87636301 87636301 C G NTRK2 Silent p.L822L 0.84 TCGA-BB-4227-01 X 128692624 128692624 G C OCRL Missense_Mutation p.E152Q 0.05 deleterious(0.03) possibly_damaging(0.884) TCGA-BB-4227-01 X 13337468 13337469 - T ATXN3L Frame_Shift_Ins p.L196Ifs*8 0.69 TCGA-BB-4227-01 X 221851 221851 C T GTPBP6 Missense_Mutation p.E252K 0.76 deleterious(0.02) possibly_damaging(0.742) TCGA-BB-4227-01 X 299609 299609 C G PPP2R3B Silent p.L458L 0.18 TCGA-BB-4227-01 X 47098752 47098752 G C USP11 Missense_Mutation p.E140Q 0.77 tolerated(0.63) benign(0.006) TCGA-BB-4227-01 X 62917013 62917013 G C ARHGEF9 Missense_Mutation p.L185V 0.89 deleterious(0.04) possibly_damaging(0.827) TCGA-BB-4227-01 X 70524109 70524109 C T ITGB1BP2 Missense_Mutation p.P238S 0.78 tolerated(1) benign(0.207) TCGA-BB-4227-01 X 70814205 70814205 G C ACRC Missense_Mutation p.R55S 0.80 benign(0.168) TCGA-BB-4228-01 10 23270411 23270411 C G ARMC3 Missense_Mutation p.F353L 0.47 tolerated(0.12) benign(0.268) TCGA-BB-4228-01 10 51748333 51748333 C T AGAP6 5'Flank 0.32 TCGA-BB-4228-01 11 104776204 104776204 G A RP11-693N9.2 RNA 0.84 TCGA-BB-4228-01 11 125301145 125301145 G A PKNOX2 Missense_Mutation p.D426N 0.36 deleterious_low_confidence(0.01) benign(0.118) TCGA-BB-4228-01 11 18723189 18723189 G T TMEM86A Missense_Mutation p.R119L 0.45 tolerated(0.72) possibly_damaging(0.487) TCGA-BB-4228-01 11 61488167 61488167 G A DAGLA Missense_Mutation p.V38M 0.44 deleterious(0.05) probably_damaging(0.996) TCGA-BB-4228-01 11 65793355 65793355 C T CATSPER1 Missense_Mutation p.V166M 0.48 tolerated(0.24) benign(0.003) TCGA-BB-4228-01 11 994108 994108 C T AP2A2 Missense_Mutation p.R607W 0.38 deleterious(0.02) benign(0.042) TCGA-BB-4228-01 12 125432580 125432580 C T DHX37 Intron 0.05 TCGA-BB-4228-01 12 30906727 30906727 C T CAPRIN2 5'UTR 0.03 TCGA-BB-4228-01 12 53877172 53877172 T C MAP3K12 Missense_Mutation p.K525R 0.44 tolerated(0.4) benign(0.209) TCGA-BB-4228-01 14 103363706 103363706 C T TRAF3 Nonsense_Mutation p.R310* 0.78 TCGA-BB-4228-01 15 41102895 41102895 C T ZFYVE19 Silent p.L256L 0.18 TCGA-BB-4228-01 15 43641114 43641114 C T ADAL Nonsense_Mutation p.Q188* 0.37 TCGA-BB-4228-01 16 30522385 30522385 C G ITGAL Nonsense_Mutation p.S905* 0.42 TCGA-BB-4228-01 16 30525152 30525152 C T ITGAL Silent p.V949V 0.42 TCGA-BB-4228-01 17 2227681 2227681 C T SRR 3'UTR 0.40 TCGA-BB-4228-01 17 2232472 2232472 C G TSR1 Intron 0.46 TCGA-BB-4228-01 17 28417554 28417554 G A EFCAB5 Missense_Mutation p.D1267N 0.45 deleterious(0) probably_damaging(1) TCGA-BB-4228-01 17 67144957 67144957 G C ABCA10 3'UTR 0.53 TCGA-BB-4228-01 17 78013852 78013852 C T CCDC40 Missense_Mutation p.T112M 0.43 tolerated(0.07) benign(0) TCGA-BB-4228-01 17 79966949 79966949 G T ASPSCR1 Missense_Mutation p.V324L 0.58 tolerated(0.11) unknown(0) TCGA-BB-4228-01 19 20235931 20235931 C T CTC-260E6.2 RNA 0.48 TCGA-BB-4228-01 19 3054133 3054133 C T AES Silent p.L186L 0.43 TCGA-BB-4228-01 19 43257465 43257465 C A PSG8 3'Flank 0.16 TCGA-BB-4228-01 19 46289911 46289911 C T DMWD Silent p.A281A 0.42 TCGA-BB-4228-01 19 57286109 57286109 G T ZIM2 Missense_Mutation p.Q511K 0.50 tolerated(0.11) benign(0.056) TCGA-BB-4228-01 19 6309770 6309770 G A ACER1 Silent p.N142N 0.42 TCGA-BB-4228-01 1 152487926 152487926 C T CRCT1 Missense_Mutation p.P23S 0.58 unknown(0) TCGA-BB-4228-01 1 152732518 152732520 AAC - KPRP In_Frame_Del p.N152del 0.40 TCGA-BB-4228-01 1 155630937 155630937 G A YY1AP1 Intron 0.50 TCGA-BB-4228-01 1 196227545 196227545 C T KCNT2 Missense_Mutation p.R997H 0.42 deleterious(0.01) possibly_damaging(0.906) TCGA-BB-4228-01 1 234743346 234743348 TTG - IRF2BP2 In_Frame_Del p.N434del 0.46 TCGA-BB-4228-01 20 2097996 2097996 G A STK35 Missense_Mutation p.R526K 0.87 tolerated(0.05) benign(0.401) TCGA-BB-4228-01 21 43161351 43161351 A G RIPK4 Missense_Mutation p.S668P 0.51 tolerated(0.28) benign(0.104) TCGA-BB-4228-01 21 43704767 43704767 G A ABCG1 Missense_Mutation p.A278T 0.03 deleterious(0.02) benign(0.327) TCGA-BB-4228-01 21 46021042 46021042 C A KRTAP10-7 Missense_Mutation p.S174Y 0.26 deleterious(0.01) unknown(0) TCGA-BB-4228-01 2 189854843 189854843 C T COL3A1 Nonsense_Mutation p.R238* 0.32 TCGA-BB-4228-01 3 125695695 125695695 C T ROPN1B Intron 0.47 TCGA-BB-4228-01 3 131190031 131190031 C A MRPL3 Missense_Mutation p.G241V 0.05 deleterious(0) probably_damaging(1) TCGA-BB-4228-01 3 50326114 50326114 C T IFRD2 Missense_Mutation p.R415H 0.90 deleterious(0.02) benign(0.104) TCGA-BB-4228-01 4 126372965 126372965 A G FAT4 Silent p.G3598G 0.45 TCGA-BB-4228-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.45 deleterious(0) probably_damaging(1) TCGA-BB-4228-01 5 140181621 140181621 C G PCDHA3 Missense_Mutation p.S280C 0.47 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BB-4228-01 5 140515010 140515010 C T PCDHB5 5'UTR 0.47 TCGA-BB-4228-01 5 74651207 74651207 C A HMGCR Missense_Mutation p.S580R 0.36 tolerated(0.56) benign(0.003) TCGA-BB-4228-01 6 127796906 127796906 G A SOGA3 Silent p.S755S 0.48 TCGA-BB-4228-01 6 159653589 159653589 G A FNDC1 Missense_Mutation p.R682H 0.47 tolerated_low_confidence(0.11) unknown(0) TCGA-BB-4228-01 6 161155067 161155067 G A PLG Missense_Mutation p.C543Y 0.48 deleterious(0) probably_damaging(1) TCGA-BB-4228-01 6 37140830 37140830 G A PIM1 Silent p.S222S 0.40 TCGA-BB-4228-01 6 86324547 86324547 T A SYNCRIP Missense_Mutation p.H600L 0.45 tolerated_low_confidence(0.3) unknown(0) TCGA-BB-4228-01 7 100275401 100275401 G A GNB2 Missense_Mutation p.D153N 0.54 tolerated(1) benign(0.008) TCGA-BB-4228-01 8 101206583 101206583 C T SPAG1 Intron 0.20 TCGA-BB-4228-01 8 28384970 28384970 C A FZD3 Missense_Mutation p.F231L 0.23 deleterious(0) probably_damaging(0.994) TCGA-BB-4228-01 8 3245095 3245095 C T CSMD1 Silent p.P901P 0.41 TCGA-BB-4228-01 8 39624556 39624556 A T ADAM2 Missense_Mutation p.S440T 0.74 tolerated(0.31) benign(0.038) TCGA-BB-4228-01 8 77896111 77896111 G T PEX2 Missense_Mutation p.Q102K 0.66 tolerated(0.1) probably_damaging(0.992) TCGA-BB-7870-01 10 105172881 105172881 C T PDCD11 Silent p.A329A 0.39 TCGA-BB-7870-01 10 1405856 1405856 C A ADARB2 Silent p.T148T 0.44 TCGA-BB-7870-01 10 25464376 25464376 C T GPR158 Silent p.L9L 0.27 TCGA-BB-7870-01 10 44880407 44880407 A G CXCL12 Missense_Mutation p.L16P 0.33 deleterious(0.03) probably_damaging(0.935) TCGA-BB-7870-01 10 50669597 50669597 C T ERCC6 Missense_Mutation p.V1262M 0.25 deleterious(0.03) probably_damaging(0.975) TCGA-BB-7870-01 10 51582808 51582808 G T NCOA4 Missense_Mutation p.G211C 0.45 deleterious(0.03) benign(0.007) TCGA-BB-7870-01 10 55591201 55591201 G T PCDH15 Missense_Mutation p.A1359E 0.31 tolerated(0.13) possibly_damaging(0.806) TCGA-BB-7870-01 10 56424033 56424033 A G PCDH15 5'UTR 0.21 TCGA-BB-7870-01 10 61831145 61831145 C T ANK3 Missense_Mutation p.S3165N 0.46 probably_damaging(0.932) TCGA-BB-7870-01 10 69957119 69957119 C A MYPN Silent p.R1057R 0.50 TCGA-BB-7870-01 10 71174866 71174866 G A TACR2 Missense_Mutation p.P141L 0.41 deleterious(0.01) benign(0.438) TCGA-BB-7870-01 10 71392835 71392835 G C C10orf35 3'UTR 0.23 TCGA-BB-7870-01 10 7759724 7759724 A T ITIH2 Missense_Mutation p.Q201H 0.54 deleterious(0.03) benign(0.019) TCGA-BB-7870-01 10 86001139 86001139 G T LRIT1 Silent p.A19A 0.28 TCGA-BB-7870-01 10 89503171 89503171 G A PAPSS2 Missense_Mutation p.G422S 0.10 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 10 93245017 93245017 A G HECTD2 Missense_Mutation p.M351V 0.25 deleterious(0.01) benign(0.017) TCGA-BB-7870-01 10 94700544 94700544 A G EXOC6 Missense_Mutation p.N425D 0.12 deleterious(0.04) benign(0.019) TCGA-BB-7870-01 11 110501372 110501372 A G ARHGAP20 Missense_Mutation p.L111P 0.10 deleterious(0) probably_damaging(0.979) TCGA-BB-7870-01 11 119212270 119212270 A C MFRP Missense_Mutation p.C576W 0.18 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 11 120776131 120776131 G - GRIK4 Frame_Shift_Del p.D470Mfs*20 0.40 TCGA-BB-7870-01 11 123886778 123886778 C G OR10G4 Missense_Mutation p.P166R 0.38 deleterious(0.01) probably_damaging(0.931) TCGA-BB-7870-01 11 123894151 123894151 C T OR10G9 Silent p.A144A 0.18 TCGA-BB-7870-01 11 124189760 124189760 C A OR8D2 Missense_Mutation p.G112C 0.28 tolerated(1) probably_damaging(1) TCGA-BB-7870-01 11 1606258 1606258 G T KRTAP5-1 Silent p.G74G 0.22 TCGA-BB-7870-01 11 16838753 16838753 G A PLEKHA7 Missense_Mutation p.P487L 0.48 deleterious(0) possibly_damaging(0.613) TCGA-BB-7870-01 11 17793670 17793670 C T KCNC1 Silent p.N343N 0.23 TCGA-BB-7870-01 11 22296134 22296134 C A ANO5 Missense_Mutation p.T752K 0.47 deleterious(0) probably_damaging(0.996) TCGA-BB-7870-01 11 40136523 40136523 G T LRRC4C Silent p.T440T 0.47 TCGA-BB-7870-01 11 5221368 5221368 C G OR51V1 Missense_Mutation p.C188S 0.26 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 11 5221625 5221625 G C OR51V1 Missense_Mutation p.S102R 0.51 deleterious(0.04) benign(0.049) TCGA-BB-7870-01 11 5264414 5264414 C A HBG1 3'Flank 0.31 TCGA-BB-7870-01 11 55587463 55587463 G A OR5D18 Missense_Mutation p.A120T 0.24 deleterious(0) probably_damaging(0.957) TCGA-BB-7870-01 11 55606973 55606973 C T OR5D16 Missense_Mutation p.A249V 0.21 deleterious(0.03) benign(0.107) TCGA-BB-7870-01 11 56344372 56344372 C A OR5M10 Missense_Mutation p.V276F 0.21 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 11 57958040 57958040 T A OR9Q2 Silent p.P26P 0.22 TCGA-BB-7870-01 11 58190401 58190401 A C OR5B2 Missense_Mutation p.L112V 0.25 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-BB-7870-01 11 60739236 60739236 C T CD6 5'UTR 0.28 TCGA-BB-7870-01 11 67075021 67075021 G T SSH3 Missense_Mutation p.A202S 0.28 tolerated(1) benign(0.014) TCGA-BB-7870-01 11 69488085 69488085 G A ORAOV1 Missense_Mutation p.H19Y 0.03 tolerated(0.07) benign(0.239) TCGA-BB-7870-01 11 84028057 84028057 G C DLG2 Intron 0.18 TCGA-BB-7870-01 11 89407259 89407259 G A FOLH1B RNA 0.14 TCGA-BB-7870-01 11 92531954 92531954 C A FAT3 Silent p.G1925G 0.08 TCGA-BB-7870-01 12 100431378 100431378 C A UHRF1BP1L 3'UTR 0.35 TCGA-BB-7870-01 12 107372502 107372502 C G MTERFD3 5'UTR 0.38 TCGA-BB-7870-01 12 108685603 108685603 G C CMKLR1 3'UTR 0.17 TCGA-BB-7870-01 12 113357191 113357191 C G OAS1 Intron 0.41 TCGA-BB-7870-01 12 114386746 114386746 C A RBM19 Missense_Mutation p.G390W 0.35 tolerated(0.05) possibly_damaging(0.712) TCGA-BB-7870-01 12 130184675 130184675 C T TMEM132D Silent p.V216V 0.22 TCGA-BB-7870-01 12 132529259 132529259 C T EP400 Missense_Mutation p.P2210L 0.36 unknown(0) TCGA-BB-7870-01 12 14766103 14766103 G T GUCY2C Missense_Mutation p.T1057N 0.39 tolerated_low_confidence(0.19) benign(0.13) TCGA-BB-7870-01 12 21446919 21446919 A G SLCO1A2 Missense_Mutation p.L466P 0.42 deleterious(0) probably_damaging(0.994) TCGA-BB-7870-01 12 2797877 2797877 A G CACNA1C Missense_Mutation p.M2065V 0.36 tolerated_low_confidence(0.17) benign(0.005) TCGA-BB-7870-01 12 31815160 31815160 T C METTL20 Silent p.P91P 0.16 TCGA-BB-7870-01 12 40692983 40692983 C T LRRK2 Silent p.H1140H 0.18 TCGA-BB-7870-01 12 43944800 43944800 C A ADAMTS20 Missense_Mutation p.G122V 0.37 tolerated(0.55) benign(0.007) TCGA-BB-7870-01 12 49422696 49422696 G A KMT2D Missense_Mutation p.P4766L 0.36 unknown(0) TCGA-BB-7870-01 12 52864970 52864970 G C KRT6C Nonsense_Mutation p.Y341* 0.40 TCGA-BB-7870-01 12 53187953 53187953 C T KRT3 Missense_Mutation p.G270R 0.19 tolerated(0.1) probably_damaging(0.922) TCGA-BB-7870-01 12 55420705 55420705 G A NEUROD4 Missense_Mutation p.G161E 0.39 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 12 57175987 57175987 T C HSD17B6 Silent p.Y181Y 0.38 TCGA-BB-7870-01 12 57866398 57866398 G T ARHGAP9 Silent p.R700R 0.42 TCGA-BB-7870-01 12 66638788 66638788 C A IRAK3 Missense_Mutation p.L383M 0.35 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 12 70934711 70934711 C A PTPRB Missense_Mutation p.V1841L 0.35 tolerated(0.31) benign(0.036) TCGA-BB-7870-01 12 71016374 71016374 G C PTPRB Silent p.P168P 0.33 TCGA-BB-7870-01 12 71158516 71158516 G C PTPRR Missense_Mutation p.R134G 0.36 deleterious_low_confidence(0) benign(0.273) TCGA-BB-7870-01 12 76424417 76424417 G T PHLDA1 Missense_Mutation p.H369N 0.38 tolerated_low_confidence(0.47) unknown(0) TCGA-BB-7870-01 12 79611319 79611319 A G SYT1 Missense_Mutation p.H7R 0.39 tolerated_low_confidence(1) benign(0) TCGA-BB-7870-01 12 98927584 98927584 G T TMPO Missense_Mutation p.A517S 0.46 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-BB-7870-01 13 108955624 108955624 C T TNFSF13B Missense_Mutation p.L169F 0.29 deleterious(0.02) possibly_damaging(0.846) TCGA-BB-7870-01 13 53603068 53603068 G T OLFM4 Missense_Mutation p.G33C 0.43 tolerated_low_confidence(0.07) unknown(0) TCGA-BB-7870-01 13 58206752 58206752 C G PCDH17 Silent p.S24S 0.42 TCGA-BB-7870-01 13 58208455 58208455 C A PCDH17 Missense_Mutation p.T592N 0.49 deleterious(0) possibly_damaging(0.721) TCGA-BB-7870-01 13 58208456 58208456 C G PCDH17 Silent p.T592T 0.49 TCGA-BB-7870-01 13 95364236 95364236 C A SOX21 Missense_Mutation p.R23L 0.25 deleterious(0) probably_damaging(0.999) TCGA-BB-7870-01 13 97485339 97485339 C A HS6ST3 Silent p.R435R 0.44 TCGA-BB-7870-01 14 101200827 101200827 C T DLK1 Missense_Mutation p.A249V 0.28 tolerated(0.28) benign(0) TCGA-BB-7870-01 14 105070800 105070800 G A TMEM179 Silent p.L93L 0.23 TCGA-BB-7870-01 14 105181075 105181075 C A INF2 Silent p.S1192S 0.37 TCGA-BB-7870-01 14 106208539 106208539 G T IGHG1 Missense_Mutation p.P121T 0.40 deleterious(0.01) probably_damaging(0.945) TCGA-BB-7870-01 14 106791010 106791010 C T IGHV3-30 Missense_Mutation p.A116T 0.06 tolerated_low_confidence(0.14) benign(0.168) TCGA-BB-7870-01 14 107211183 107211183 A G IGHV3-73 Missense_Mutation p.S36P 0.30 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-BB-7870-01 14 20389301 20389301 G T OR4K5 Missense_Mutation p.C179F 0.18 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 14 21511429 21511429 G A RNASE7 Missense_Mutation p.G93D 0.36 deleterious(0.04) benign(0.126) TCGA-BB-7870-01 14 23518342 23518342 C T CDH24 Silent p.Q618Q 0.42 TCGA-BB-7870-01 14 23530761 23530761 C T ACIN1 Missense_Mutation p.R1115Q 0.21 possibly_damaging(0.723) TCGA-BB-7870-01 14 31112596 31112596 T - SCFD1 Frame_Shift_Del p.F201Lfs*9 0.31 TCGA-BB-7870-01 14 65511078 65511078 G A FNTB Missense_Mutation p.R291H 0.08 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 14 91942249 91942249 T C SMEK1 Missense_Mutation p.Y391C 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-BB-7870-01 15 23889926 23889926 A G MAGEL2 Silent p.S385S 0.17 TCGA-BB-7870-01 15 24922855 24922855 C A NPAP1 Missense_Mutation p.P614Q 0.19 deleterious(0.01) possibly_damaging(0.561) TCGA-BB-7870-01 15 25924782 25924782 G T ATP10A Silent p.V1402V 0.24 TCGA-BB-7870-01 15 25953178 25953178 G A ATP10A Silent p.S840S 0.21 TCGA-BB-7870-01 15 25958826 25958826 G A ATP10A Missense_Mutation p.S780F 0.47 deleterious(0.04) benign(0.068) TCGA-BB-7870-01 15 25961899 25961899 G T ATP10A Missense_Mutation p.S585Y 0.17 deleterious(0.01) possibly_damaging(0.863) TCGA-BB-7870-01 15 26792997 26792997 C A GABRB3 Silent p.V455V 0.40 TCGA-BB-7870-01 15 29092288 29092288 G C GOLGA6L7P RNA 0.54 TCGA-BB-7870-01 15 44097469 44097469 C A MFAP1 Missense_Mutation p.K381N 0.24 deleterious(0) probably_damaging(0.996) TCGA-BB-7870-01 15 50788043 50788043 A T USP8 Splice_Site p.X887_splice 0.47 TCGA-BB-7870-01 15 55724725 55724725 C G DYX1C1 Missense_Mutation p.A375P 0.25 deleterious(0) probably_damaging(0.988) TCGA-BB-7870-01 15 69347743 69347743 T A NOX5 Missense_Mutation p.L690Q 0.54 deleterious(0) probably_damaging(0.982) TCGA-BB-7870-01 15 72227722 72227722 T C MYO9A Missense_Mutation p.T828A 0.29 tolerated(0.76) benign(0.001) TCGA-BB-7870-01 15 74325808 74325808 G A PML Intron 0.59 TCGA-BB-7870-01 16 21995692 21995692 C A PDZD9 Nonsense_Mutation p.E171* 0.26 TCGA-BB-7870-01 16 30093844 30093844 G C PPP4C Missense_Mutation p.E64Q 0.46 deleterious(0.02) possibly_damaging(0.473) TCGA-BB-7870-01 16 3119453 3119453 C - IL32 3'UTR 0.14 TCGA-BB-7870-01 16 49671630 49671630 G C ZNF423 Missense_Mutation p.S478C 0.21 deleterious(0.05) possibly_damaging(0.469) TCGA-BB-7870-01 16 55730200 55730200 G A SLC6A2 Nonsense_Mutation p.W404* 0.17 TCGA-BB-7870-01 16 68597604 68597604 C A ZFP90 Missense_Mutation p.T305N 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-BB-7870-01 16 70841641 70841641 G T HYDIN Silent p.R5070R 0.21 TCGA-BB-7870-01 16 72992274 72992274 C A ZFHX3 Missense_Mutation p.A591S 0.41 benign(0.155) TCGA-BB-7870-01 17 12656076 12656076 G T MYOCD Missense_Mutation p.V491L 0.74 tolerated(1) benign(0.015) TCGA-BB-7870-01 17 21215473 21215473 G C MAP2K3 Missense_Mutation p.R265P 0.10 deleterious(0.01) possibly_damaging(0.665) TCGA-BB-7870-01 17 26091081 26091081 G T NOS2 Missense_Mutation p.Q840K 0.37 tolerated(0.15) possibly_damaging(0.626) TCGA-BB-7870-01 17 30376361 30376362 - T LRRC37B Frame_Shift_Ins p.I876Yfs*2 0.20 TCGA-BB-7870-01 17 32965040 32965040 C T TMEM132E Missense_Mutation p.S915L 0.57 deleterious(0) probably_damaging(0.998) TCGA-BB-7870-01 17 66880537 66880537 G A ABCA8 Missense_Mutation p.L1144F 0.82 tolerated(0.31) benign(0.009) TCGA-BB-7870-01 17 75478454 75478454 G A SEPT9 Intron 0.07 TCGA-BB-7870-01 17 7578255 7578255 T - TP53 Frame_Shift_Del p.G199Efs*48 0.45 TCGA-BB-7870-01 17 80790186 80790186 A G ZNF750 Missense_Mutation p.C49R 0.38 deleterious(0) probably_damaging(0.999) TCGA-BB-7870-01 18 12421573 12421573 G A SLMO1 Missense_Mutation p.R79Q 0.18 tolerated(0.84) benign(0.004) TCGA-BB-7870-01 18 14752569 14752569 G C ANKRD30B Missense_Mutation p.A76P 0.12 tolerated(0.1) possibly_damaging(0.822) TCGA-BB-7870-01 18 14763758 14763758 G T ANKRD30B Missense_Mutation p.L298F 0.72 deleterious(0.02) probably_damaging(0.989) TCGA-BB-7870-01 18 50451655 50451655 G C DCC Silent p.V300V 0.47 TCGA-BB-7870-01 18 5394711 5394711 C A EPB41L3 Nonsense_Mutation p.E1079* 0.44 TCGA-BB-7870-01 18 60563123 60563123 A T PHLPP1 Missense_Mutation p.I775F 0.33 deleterious(0.03) benign(0.022) TCGA-BB-7870-01 18 66344122 66344122 C A TMX3 3'UTR 0.12 TCGA-BB-7870-01 18 7016508 7016508 G C LAMA1 Missense_Mutation p.Q991E 0.23 tolerated(0.12) benign(0.022) TCGA-BB-7870-01 19 10610642 10610642 C T KEAP1 Missense_Mutation p.C23Y 0.41 tolerated_low_confidence(0.17) benign(0.003) TCGA-BB-7870-01 19 13064981 13064981 G A GADD45GIP1 3'UTR 0.20 TCGA-BB-7870-01 19 13411423 13411423 C T CACNA1A Silent p.Q740Q 0.38 TCGA-BB-7870-01 19 15580643 15580643 C T PGLYRP2 Missense_Mutation p.A481T 0.56 deleterious(0) probably_damaging(0.968) TCGA-BB-7870-01 19 17448916 17448916 C G GTPBP3 Missense_Mutation p.I51M 0.18 deleterious(0) probably_damaging(0.99) TCGA-BB-7870-01 19 23836878 23836878 C T ZNF675 Missense_Mutation p.C286Y 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-BB-7870-01 19 2717735 2717735 C T DIRAS1 Missense_Mutation p.V24M 0.19 tolerated(0.07) probably_damaging(0.995) TCGA-BB-7870-01 19 30097182 30097182 C T POP4 5'UTR 0.13 TCGA-BB-7870-01 19 37904957 37904957 G A ZNF569 Silent p.L201L 0.48 TCGA-BB-7870-01 19 38023283 38023283 T C ZNF793 Missense_Mutation p.V14A 0.48 tolerated(1) possibly_damaging(0.813) TCGA-BB-7870-01 19 38102620 38102620 A - ZNF540 Frame_Shift_Del p.M149Cfs*12 0.18 TCGA-BB-7870-01 19 43268170 43268170 G T PSG8 Missense_Mutation p.Q110K 0.34 deleterious(0.02) benign(0.105) TCGA-BB-7870-01 19 43268171 43268171 G T PSG8 Silent p.I109I 0.34 TCGA-BB-7870-01 19 48608658 48608658 C T PLA2G4C Missense_Mutation p.A28T 0.39 tolerated(0.4) benign(0.211) TCGA-BB-7870-01 19 50216783 50216783 A T CPT1C Missense_Mutation p.E778V 0.57 deleterious_low_confidence(0.01) benign(0.046) TCGA-BB-7870-01 19 50921181 50921181 C - POLD1 Frame_Shift_Del p.P1102Lfs*22 0.12 TCGA-BB-7870-01 19 53058525 53058525 A G ZNF808 Missense_Mutation p.T786A 0.59 deleterious(0) benign(0.165) TCGA-BB-7870-01 19 55112428 55112428 G T LILRA1 3'UTR 0.24 TCGA-BB-7870-01 19 55317416 55317416 G T KIR2DL4 Missense_Mutation p.E124D 0.10 tolerated(0.06) benign(0.008) TCGA-BB-7870-01 19 55401297 55401298 AG - FCAR 3'UTR 0.10 TCGA-BB-7870-01 19 57326605 57326605 C A PEG3 Missense_Mutation p.D1069Y 0.11 deleterious(0.04) benign(0) TCGA-BB-7870-01 19 57640564 57640564 C A USP29 Nonsense_Mutation p.S174* 0.10 TCGA-BB-7870-01 19 57744012 57744012 G T AURKC Missense_Mutation p.Q133H 0.57 deleterious(0.01) probably_damaging(0.964) TCGA-BB-7870-01 19 7671400 7671400 G C CAMSAP3 Silent p.A188A 0.40 TCGA-BB-7870-01 19 900092 900097 CGCAGA - R3HDM4 In_Frame_Del p.L176_R177del 0.16 TCGA-BB-7870-01 19 9068558 9068558 A T MUC16 Missense_Mutation p.H6296Q 0.34 unknown(0) TCGA-BB-7870-01 1 103444452 103444452 T A COL11A1 Missense_Mutation p.R891S 0.36 unknown(0) TCGA-BB-7870-01 1 111853034 111853034 T A CHIA 5'UTR 0.41 TCGA-BB-7870-01 1 118583438 118583438 T A SPAG17 Silent p.I1027I 0.35 TCGA-BB-7870-01 1 152883950 152883950 G T IVL Silent p.L559L 0.38 TCGA-BB-7870-01 1 153973462 153973462 G A NUP210L Silent p.Y1752Y 0.36 TCGA-BB-7870-01 1 155023225 155023225 G A DCST1 Missense_Mutation p.V668M 0.06 tolerated(0.05) benign(0.097) TCGA-BB-7870-01 1 155695220 155695220 A G DAP3 Silent p.L106L 0.43 TCGA-BB-7870-01 1 155899517 155899517 G T KIAA0907 Missense_Mutation p.Q124K 0.32 tolerated(0.36) possibly_damaging(0.848) TCGA-BB-7870-01 1 158390470 158390470 G A OR10K2 Missense_Mutation p.L63F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-BB-7870-01 1 161480736 161480736 G A FCGR2A Silent p.K244K 0.11 TCGA-BB-7870-01 1 161495520 161495520 G T HSPA6 Missense_Mutation p.G358C 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BB-7870-01 1 166890013 166890013 G A ILDR2 Silent p.Y605Y 0.57 TCGA-BB-7870-01 1 16892175 16892175 A T NBPF1 Missense_Mutation p.F1006Y 0.02 tolerated(0.12) benign(0.332) TCGA-BB-7870-01 1 169446778 169446778 T C SLC19A2 Missense_Mutation p.Y141C 0.37 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 1 171956858 171956858 G A DNM3 Missense_Mutation p.E100K 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-BB-7870-01 1 173478767 173478767 T C SLC9C2 Missense_Mutation p.I993M 0.31 tolerated(0.26) benign(0.156) TCGA-BB-7870-01 1 192544928 192544928 C A RGS1 Silent p.R2R 0.47 TCGA-BB-7870-01 1 196227430 196227430 T A KCNT2 Missense_Mutation p.K1035N 0.41 tolerated(0.51) benign(0.087) TCGA-BB-7870-01 1 196879515 196879515 T G CFHR4 Missense_Mutation p.Y301D 0.20 tolerated(0.22) possibly_damaging(0.525) TCGA-BB-7870-01 1 197297664 197297664 T C CRB1 Silent p.N61N 0.39 TCGA-BB-7870-01 1 201687752 201687752 G A NAV1 Silent p.K365K 0.40 TCGA-BB-7870-01 1 206610339 206610339 G T SRGAP2 Missense_Mutation p.R441L 0.36 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 1 210761381 210761381 G A HHAT Missense_Mutation p.G396R 0.11 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 1 212151805 212151805 T C INTS7 Missense_Mutation p.S427G 0.42 tolerated(0.61) benign(0.001) TCGA-BB-7870-01 1 216371758 216371758 G T USH2A Missense_Mutation p.T1327N 0.36 benign(0.213) TCGA-BB-7870-01 1 216420335 216420335 C T USH2A Missense_Mutation p.G801R 0.35 probably_damaging(1) TCGA-BB-7870-01 1 228871725 228871725 T A RHOU Missense_Mutation p.I79N 0.31 deleterious(0.03) possibly_damaging(0.717) TCGA-BB-7870-01 1 22965856 22965856 G T C1QA Missense_Mutation p.A232S 0.32 tolerated(0.09) benign(0.189) TCGA-BB-7870-01 1 237711838 237711838 A T RYR2 Missense_Mutation p.N1005I 0.18 probably_damaging(0.939) TCGA-BB-7870-01 1 243456392 243456392 G A SDCCAG8 Splice_Site p.X183_splice 0.37 TCGA-BB-7870-01 1 247751829 247751829 C A OR2G2 Silent p.P56P 0.40 TCGA-BB-7870-01 1 27106583 27106583 C T ARID1A Missense_Mutation p.A2065V 0.36 possibly_damaging(0.863) TCGA-BB-7870-01 1 27878425 27878425 C - AHDC1 Frame_Shift_Del p.D68Tfs*49 0.21 TCGA-BB-7870-01 1 39889837 39889837 G T MACF1 Missense_Mutation p.W3367C 0.35 probably_damaging(1) TCGA-BB-7870-01 1 47606535 47606535 C G CYP4A22 Silent p.G93G 0.33 TCGA-BB-7870-01 1 55223963 55223963 T C PARS2 Missense_Mutation p.N291S 0.19 tolerated(1) benign(0.001) TCGA-BB-7870-01 1 92459709 92459709 G A BRDT Missense_Mutation p.V729I 0.40 tolerated(0.44) benign(0.048) TCGA-BB-7870-01 1 92789439 92789439 G A RPAP2 Missense_Mutation p.R321K 0.17 tolerated(0.93) benign(0.013) TCGA-BB-7870-01 20 23065301 23065301 G A CD93 Missense_Mutation p.P510L 0.23 tolerated(0.33) benign(0.021) TCGA-BB-7870-01 20 23965811 23965811 T G GGTLC1 3'UTR 0.51 TCGA-BB-7870-01 20 29993974 29993974 G T DEFB121 5'UTR 0.32 TCGA-BB-7870-01 20 31374396 31374396 A G DNMT3B Missense_Mutation p.H132R 0.29 tolerated_low_confidence(0.34) benign(0.114) TCGA-BB-7870-01 20 35526865 35526865 G T SAMHD1 Missense_Mutation p.A529E 0.39 deleterious(0) benign(0.142) TCGA-BB-7870-01 20 35526866 35526866 C T SAMHD1 Missense_Mutation p.A529T 0.38 tolerated(0.07) benign(0.05) TCGA-BB-7870-01 20 3673573 3673573 G C SIGLEC1 Missense_Mutation p.F1238L 0.27 tolerated(1) benign(0.002) TCGA-BB-7870-01 20 43251533 43251533 G A ADA Silent p.G239G 0.31 TCGA-BB-7870-01 20 43379255 43379255 G T KCNK15 Missense_Mutation p.A257S 0.33 tolerated(0.5) benign(0.047) TCGA-BB-7870-01 20 48127716 48127716 C T PTGIS Missense_Mutation p.V403I 0.36 tolerated(0.18) benign(0.003) TCGA-BB-7870-01 20 62598358 62598358 C A ZNF512B Splice_Site p.X89_splice 0.42 TCGA-BB-7870-01 21 10933853 10933853 T A TPTE Silent p.T342T 0.18 TCGA-BB-7870-01 21 11039008 11039008 A G BAGE2 RNA 0.06 TCGA-BB-7870-01 21 17197371 17197371 G T USP25 Missense_Mutation p.R432M 0.11 deleterious(0) possibly_damaging(0.803) TCGA-BB-7870-01 21 43221560 43221560 G A PRDM15 Missense_Mutation p.T1455M 0.18 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-BB-7870-01 22 28196205 28196205 C A MN1 Missense_Mutation p.Q109H 0.09 probably_damaging(0.986) TCGA-BB-7870-01 22 32506304 32506304 C A SLC5A1 3'UTR 0.44 TCGA-BB-7870-01 22 40075138 40075138 C T CACNA1I Silent p.D1694D 0.10 TCGA-BB-7870-01 22 41566476 41566478 TCC - EP300 In_Frame_Del p.P1453del 0.52 TCGA-BB-7870-01 2 100203726 100203726 G A AFF3 Silent p.D852D 0.46 TCGA-BB-7870-01 2 100217970 100217970 C T AFF3 Missense_Mutation p.G458E 0.33 tolerated(1) benign(0.057) TCGA-BB-7870-01 2 11737977 11737977 G T GREB1 Silent p.V675V 0.38 TCGA-BB-7870-01 2 125555770 125555770 T A CNTNAP5 Silent p.I1029I 0.39 TCGA-BB-7870-01 2 135893466 135893466 G A RAB3GAP1 Silent p.L629L 0.37 TCGA-BB-7870-01 2 139308504 139308504 G A SPOPL Missense_Mutation p.D78N 0.20 deleterious(0) possibly_damaging(0.497) TCGA-BB-7870-01 2 141457818 141457818 C A LRP1B Splice_Site p.X2267_splice 0.40 TCGA-BB-7870-01 2 141473634 141473634 A T LRP1B Silent p.I1977I 0.23 TCGA-BB-7870-01 2 162894822 162894822 C A DPP4 Missense_Mutation p.W201C 0.15 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 2 162894823 162894823 C A DPP4 Missense_Mutation p.W201L 0.15 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 2 166744890 166744890 C G TTC21B Missense_Mutation p.V1120L 0.45 tolerated(0.85) benign(0.006) TCGA-BB-7870-01 2 176812271 176812271 C A KIAA1715 Missense_Mutation p.A215S 0.39 tolerated(0.4) benign(0.01) TCGA-BB-7870-01 2 179566302 179566302 G T TTN Missense_Mutation p.S10184Y 0.29 TCGA-BB-7870-01 2 185803442 185803462 GCTGCAGCTGCTGCAGCTGCA - ZNF804A In_Frame_Del p.A1113_A1119del 0.09 TCGA-BB-7870-01 2 207631494 207631494 G T FASTKD2 Missense_Mutation p.W26L 0.37 deleterious(0.03) possibly_damaging(0.907) TCGA-BB-7870-01 2 21231538 21231538 A G APOB Silent p.P2734P 0.03 TCGA-BB-7870-01 2 220290457 220290457 G A DES Missense_Mutation p.R454Q 0.41 deleterious(0.04) benign(0.14) TCGA-BB-7870-01 2 228786234 228786234 C A DAW1 Silent p.I390I 0.33 TCGA-BB-7870-01 2 237489140 237489140 C A ACKR3 Missense_Mutation p.P11Q 0.29 tolerated(0.55) benign(0.002) TCGA-BB-7870-01 2 71886125 71886125 C T DYSF Nonsense_Mutation p.R1625* 0.36 TCGA-BB-7870-01 2 86258532 86258532 C G POLR1A Missense_Mutation p.R1500P 0.13 tolerated(0.21) possibly_damaging(0.463) TCGA-BB-7870-01 3 100352189 100352189 T C GPR128 Missense_Mutation p.C139R 0.06 deleterious(0.01) probably_damaging(0.913) TCGA-BB-7870-01 3 101571589 101571589 G T NFKBIZ Missense_Mutation p.G146V 0.23 deleterious_low_confidence(0.02) benign(0.342) TCGA-BB-7870-01 3 108394684 108394685 TG - DZIP3 Frame_Shift_Del p.V916Gfs*4 0.19 TCGA-BB-7870-01 3 109046786 109046786 C G DPPA4 3'UTR 0.23 TCGA-BB-7870-01 3 113320475 113320475 C A SIDT1 Missense_Mutation p.S362R 0.47 tolerated(0.08) benign(0.281) TCGA-BB-7870-01 3 122645426 122645426 G T SEMA5B Missense_Mutation p.R371S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BB-7870-01 3 133672526 133672526 G T SLCO2A1 Missense_Mutation p.D235E 0.20 deleterious(0) probably_damaging(0.996) TCGA-BB-7870-01 3 148459143 148459143 C A AGTR1 Missense_Mutation p.S107R 0.49 tolerated(0.07) benign(0.28) TCGA-BB-7870-01 3 16306468 16306468 C A DPH3 5'UTR 0.35 TCGA-BB-7870-01 3 169664252 169664252 C A RP11-379K17.4 RNA 0.48 TCGA-BB-7870-01 3 175293828 175293828 G C NAALADL2 Splice_Site p.X552_splice 0.27 TCGA-BB-7870-01 3 184024591 184024591 C T PSMD2 Missense_Mutation p.A668V 0.45 tolerated(0.06) benign(0.007) TCGA-BB-7870-01 3 185167779 185167779 A T MAP3K13 Missense_Mutation p.N368Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-BB-7870-01 3 193160195 193160195 A T ATP13A4 Missense_Mutation p.M768K 0.28 tolerated(0.71) benign(0) TCGA-BB-7870-01 3 195398141 195398141 G - SDHAP2 RNA 0.18 TCGA-BB-7870-01 3 49011181 49011181 C T ARIH2 Missense_Mutation p.R274W 0.26 deleterious(0) possibly_damaging(0.828) TCGA-BB-7870-01 3 49061807 49061807 G A IMPDH2 3'UTR 0.10 TCGA-BB-7870-01 3 51669721 51669721 G - RAD54L2 Frame_Shift_Del p.G419Vfs*17 0.33 TCGA-BB-7870-01 3 51864842 51864842 C A IQCF3 3'UTR 0.33 TCGA-BB-7870-01 3 52847341 52847341 C T ITIH4 3'UTR 0.25 TCGA-BB-7870-01 3 65376898 65376898 C G MAGI1 Missense_Mutation p.D779H 0.29 deleterious(0.01) probably_damaging(0.978) TCGA-BB-7870-01 3 6903434 6903434 T A GRM7 Missense_Mutation p.L120H 0.23 deleterious(0) probably_damaging(0.979) TCGA-BB-7870-01 3 9982635 9982635 G A CRELD1 Missense_Mutation p.G188R 0.49 tolerated(0.32) benign(0.06) TCGA-BB-7870-01 4 10447135 10447135 T C ZNF518B Missense_Mutation p.H273R 0.39 tolerated(0.81) benign(0.026) TCGA-BB-7870-01 4 106552391 106552391 G A ARHGEF38 Intron 0.70 TCGA-BB-7870-01 4 126337709 126337709 G T FAT4 Missense_Mutation p.G2317V 0.67 benign(0.102) TCGA-BB-7870-01 4 142150788 142150788 G T ZNF330 Missense_Mutation p.A119S 0.66 tolerated(0.05) benign(0.158) TCGA-BB-7870-01 4 153247366 153247366 C A FBXW7 Missense_Mutation p.R479L 0.62 deleterious(0.02) probably_damaging(1) TCGA-BB-7870-01 4 20620619 20620619 G T SLIT2 Missense_Mutation p.R1526M 0.18 tolerated(0.05) benign(0.237) TCGA-BB-7870-01 4 23816147 23816147 C A PPARGC1A Missense_Mutation p.C320F 0.38 tolerated(0.15) benign(0.128) TCGA-BB-7870-01 4 23891570 23891570 T A PPARGC1A Missense_Mutation p.D4V 0.34 deleterious_low_confidence(0) benign(0.307) TCGA-BB-7870-01 4 37848718 37848718 G A PGM2 Missense_Mutation p.G392S 0.37 deleterious(0.02) probably_damaging(0.99) TCGA-BB-7870-01 4 39921964 39921964 T C PDS5A Missense_Mutation p.Q237R 0.16 tolerated(0.11) possibly_damaging(0.617) TCGA-BB-7870-01 4 42448632 42448632 C - ATP8A1 Frame_Shift_Del p.D976Ifs*14 0.27 TCGA-BB-7870-01 4 47538808 47538808 A G ATP10D Missense_Mutation p.I417V 0.34 tolerated(0.31) benign(0.001) TCGA-BB-7870-01 4 52943089 52943089 C A SPATA18 Silent p.A301A 0.12 TCGA-BB-7870-01 4 52943090 52943090 C T SPATA18 Missense_Mutation p.L302F 0.11 deleterious(0) benign(0.327) TCGA-BB-7870-01 4 54231626 54231626 G T SCFD2 Silent p.A161A 0.14 TCGA-BB-7870-01 4 55599309 55599309 G T KIT Missense_Mutation p.G812V 0.39 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 4 59391 59391 C A ZNF595 Silent p.A24A 0.05 TCGA-BB-7870-01 4 5960986 5960986 C G C4orf50 3'UTR 0.15 TCGA-BB-7870-01 4 6698621 6698621 G A S100P Missense_Mutation p.S47N 0.04 tolerated(0.23) benign(0.026) TCGA-BB-7870-01 4 69535643 69535643 T A UGT2B15 Nonsense_Mutation p.K232* 0.15 TCGA-BB-7870-01 4 72363397 72363397 T C SLC4A4 Silent p.Y718Y 0.51 TCGA-BB-7870-01 4 72631146 72631146 C T GC Intron 0.38 TCGA-BB-7870-01 4 73957509 73957509 C T ANKRD17 Missense_Mutation p.V1946M 0.12 benign(0.001) TCGA-BB-7870-01 5 11199589 11199589 G C CTNND2 Missense_Mutation p.T649S 0.30 tolerated(0.55) benign(0.019) TCGA-BB-7870-01 5 126753372 126753372 G C MEGF10 Missense_Mutation p.W391C 0.29 deleterious(0) possibly_damaging(0.89) TCGA-BB-7870-01 5 138160345 138160345 G T CTNNA1 Missense_Mutation p.A239S 0.40 tolerated(0.36) benign(0.131) TCGA-BB-7870-01 5 140216085 140216085 C AA PCDHA7 Frame_Shift_Ins p.A706Efs*24 0.19 TCGA-BB-7870-01 5 140476551 140476551 G A PCDHB2 Missense_Mutation p.R726H 0.22 tolerated_low_confidence(0.12) benign(0.411) TCGA-BB-7870-01 5 140559006 140559006 A C PCDHB8 Missense_Mutation p.N464T 0.12 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-BB-7870-01 5 140762628 140762628 G T PCDHGA7 Silent p.L54L 0.51 TCGA-BB-7870-01 5 140768675 140768675 A G PCDHGB4 Silent p.L408L 0.45 TCGA-BB-7870-01 5 154179188 154179188 A G LARP1 Missense_Mutation p.E395G 0.26 tolerated(0.17) benign(0.006) TCGA-BB-7870-01 5 154193517 154193517 G T LARP1 Missense_Mutation p.R974M 0.42 deleterious(0) probably_damaging(0.999) TCGA-BB-7870-01 5 176638368 176638368 G T NSD1 Nonsense_Mutation p.E990* 0.79 TCGA-BB-7870-01 5 19571723 19571723 C T CDH18 Silent p.L406L 0.31 TCGA-BB-7870-01 5 24511546 24511546 T C CDH10 Missense_Mutation p.T298A 0.08 tolerated(0.09) benign(0.024) TCGA-BB-7870-01 5 31323308 31323308 G T CDH6 Missense_Mutation p.V756L 0.35 tolerated(1) benign(0.019) TCGA-BB-7870-01 5 31983413 31983413 C T PDZD2 Missense_Mutation p.A210V 0.39 tolerated(0.45) benign(0.004) TCGA-BB-7870-01 5 34936260 34936260 G C DNAJC21 Silent p.T109T 0.37 TCGA-BB-7870-01 5 3599660 3599660 C A IRX1 Missense_Mutation p.Q200K 0.39 deleterious(0.02) benign(0.258) TCGA-BB-7870-01 5 38451493 38451493 G C EGFLAM Missense_Mutation p.D882H 0.20 deleterious(0.04) probably_damaging(0.983) TCGA-BB-7870-01 5 41058254 41058254 G A MROH2B Missense_Mutation p.R223W 0.20 tolerated(0.05) benign(0.031) TCGA-BB-7870-01 5 67589623 67589634 ATATGATAGATT - PIK3R1 In_Frame_Del p.D464_Y467del 0.42 TCGA-BB-7870-01 5 71756185 71756185 A T ZNF366 Missense_Mutation p.L380Q 0.28 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 5 7690829 7690829 C G ADCY2 Missense_Mutation p.P249R 0.30 deleterious(0) probably_damaging(0.994) TCGA-BB-7870-01 5 77521428 77521428 C G AP3B1 Missense_Mutation p.D181H 0.09 deleterious(0) possibly_damaging(0.876) TCGA-BB-7870-01 6 105606552 105606552 C T POPDC3 Silent p.Q223Q 0.41 TCGA-BB-7870-01 6 110778023 110778023 T C SLC22A16 Missense_Mutation p.D84G 0.22 tolerated(0.2) benign(0.012) TCGA-BB-7870-01 6 129513841 129513841 G T LAMA2 Missense_Mutation p.G542V 0.37 deleterious(0) probably_damaging(0.952) TCGA-BB-7870-01 6 142764693 142764693 A T GPR126 3'UTR 0.49 TCGA-BB-7870-01 6 152655151 152655151 G T SYNE1 Missense_Mutation p.N4262K 0.35 benign(0.004) TCGA-BB-7870-01 6 153347667 153347667 C T RGS17 Missense_Mutation p.R44K 0.34 tolerated(0.09) benign(0.11) TCGA-BB-7870-01 6 165715262 165715262 C A C6orf118 Missense_Mutation p.K183N 0.37 deleterious(0) probably_damaging(0.957) TCGA-BB-7870-01 6 165827151 165827151 G T PDE10A Nonsense_Mutation p.Y372* 0.36 TCGA-BB-7870-01 6 22570200 22570200 G T HDGFL1 Silent p.P132P 0.40 TCGA-BB-7870-01 6 25779568 25779568 G T SLC17A4 3'UTR 0.43 TCGA-BB-7870-01 6 27115050 27115050 C T HIST1H2AH Missense_Mutation p.A48V 0.47 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-BB-7870-01 6 29323420 29323420 G A OR5V1 Silent p.L185L 0.38 TCGA-BB-7870-01 6 348835 348835 A G DUSP22 Missense_Mutation p.I168V 0.15 deleterious(0.02) benign(0.097) TCGA-BB-7870-01 6 38800181 38800181 C A DNAH8 Missense_Mutation p.D1207E 0.30 benign(0.143) TCGA-BB-7870-01 6 39846300 39846300 C T DAAM2 Missense_Mutation p.S494F 0.38 deleterious(0.01) probably_damaging(0.931) TCGA-BB-7870-01 6 42978983 42978983 C T PPP2R5D Missense_Mutation p.R590W 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BB-7870-01 6 44250254 44250254 G A TCTE1 Missense_Mutation p.R297C 0.37 tolerated(0.06) benign(0.411) TCGA-BB-7870-01 6 62757889 62757889 A T KHDRBS2 Missense_Mutation p.V77E 0.30 deleterious(0) probably_damaging(0.959) TCGA-BB-7870-01 6 7584607 7584607 A G DSP Missense_Mutation p.Q2371R 0.42 probably_damaging(1) TCGA-BB-7870-01 6 90448144 90448144 C T MDN1 Missense_Mutation p.E1542K 0.04 probably_damaging(1) TCGA-BB-7870-01 7 117876980 117876980 C A ANKRD7 Missense_Mutation p.H238N 0.32 tolerated(0.37) benign(0) TCGA-BB-7870-01 7 128490528 128490528 G T FLNC Nonsense_Mutation p.E1797* 0.39 TCGA-BB-7870-01 7 135106967 135106967 G T CNOT4 Missense_Mutation p.R104S 0.34 deleterious(0) probably_damaging(0.999) TCGA-BB-7870-01 7 142032037 142032037 C - TRBV7-1 5'UTR 0.29 TCGA-BB-7870-01 7 142378982 142378982 A T MTRNR2L6 3'Flank 0.39 TCGA-BB-7870-01 7 149515820 149515820 C A SSPO RNA 0.22 TCGA-BB-7870-01 7 150934743 150934743 G T CHPF2 Missense_Mutation p.G432V 0.45 deleterious(0) probably_damaging(0.996) TCGA-BB-7870-01 7 20682807 20682807 G A ABCB5 Silent p.L105L 0.38 TCGA-BB-7870-01 7 21631019 21631019 C A DNAH11 Missense_Mutation p.Q831K 0.35 benign(0.003) TCGA-BB-7870-01 7 38402500 38402500 C A TRGV2 Missense_Mutation p.D107Y 0.33 deleterious(0) probably_damaging(1) TCGA-BB-7870-01 7 38466556 38466556 G T AMPH Missense_Mutation p.Q405K 0.46 tolerated(0.25) benign(0.311) TCGA-BB-7870-01 7 47698880 47698880 A G C7orf65 3'UTR 0.21 TCGA-BB-7870-01 7 48682991 48682991 T G ABCA13 Splice_Site p.X4981_splice 0.36 TCGA-BB-7870-01 7 57188501 57188501 A G ZNF479 Silent p.H207H 0.23 TCGA-BB-7870-01 7 62752569 62752569 C A ZNF733P RNA 0.21 TCGA-BB-7870-01 7 73791082 73791082 G C CLIP2 Missense_Mutation p.R784P 0.19 deleterious(0.01) benign(0.33) TCGA-BB-7870-01 7 84669998 84669998 G T SEMA3D Missense_Mutation p.T346N 0.33 tolerated(0.17) probably_damaging(0.988) TCGA-BB-7870-01 7 88964895 88964895 A G ZNF804B Missense_Mutation p.K867E 0.12 tolerated(0.06) benign(0.055) TCGA-BB-7870-01 7 94897988 94897988 C G PPP1R9A Missense_Mutation p.S931C 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BB-7870-01 7 94897989 94897989 C A PPP1R9A Silent p.S931S 0.16 TCGA-BB-7870-01 7 94953716 94953716 G T PON1 Nonsense_Mutation p.Y24* 0.33 TCGA-BB-7870-01 8 100568693 100568693 A C VPS13B Missense_Mutation p.L1612F 0.09 deleterious(0.03) probably_damaging(0.969) TCGA-BB-7870-01 8 110980643 110980643 C A KCNV1 Missense_Mutation p.V393L 0.37 deleterious(0) probably_damaging(0.992) TCGA-BB-7870-01 8 113966914 113966914 G T CSMD3 Silent p.I473I 0.41 TCGA-BB-7870-01 8 125989245 125989245 A G ZNF572 Silent p.E245E 0.47 TCGA-BB-7870-01 8 13947988 13947988 A T SGCZ Silent p.T301T 0.28 TCGA-BB-7870-01 8 143993294 143993294 G A CYP11B2 3'UTR 0.31 TCGA-BB-7870-01 8 144892747 144892747 G A SCRIB Missense_Mutation p.P478S 0.34 probably_damaging(0.943) TCGA-BB-7870-01 8 32621347 32621347 G A NRG1 Silent p.S455S 0.12 TCGA-BB-7870-01 8 36693861 36693861 A G KCNU1 Missense_Mutation p.Q448R 0.46 deleterious(0.02) possibly_damaging(0.825) TCGA-BB-7870-01 8 72948639 72948639 C A TRPA1 Silent p.T813T 0.29 TCGA-BB-7870-01 8 80577149 80577149 C A STMN2 3'UTR 0.51 TCGA-BB-7870-01 8 8234718 8234718 G T SGK223 Missense_Mutation p.P401T 0.53 benign(0.039) TCGA-BB-7870-01 8 88886288 88886288 C G DCAF4L2 5'UTR 0.30 TCGA-BB-7870-01 9 101777723 101777723 A G COL15A1 Missense_Mutation p.T460A 0.27 tolerated_low_confidence(0.1) benign(0.004) TCGA-BB-7870-01 9 109691728 109691728 A T ZNF462 Silent p.P1845P 0.49 TCGA-BB-7870-01 9 116122898 116122898 C A BSPRY Silent p.R138R 0.08 TCGA-BB-7870-01 9 128434625 128434625 C A MAPKAP1 Missense_Mutation p.D77Y 0.46 deleterious(0) probably_damaging(0.996) TCGA-BB-7870-01 9 131073208 131073208 C A TRUB2 Missense_Mutation p.G210C 0.08 deleterious(0) probably_damaging(0.972) TCGA-BB-7870-01 9 13188969 13188969 A C MPDZ Silent p.T726T 0.39 TCGA-BB-7870-01 9 133573566 133573566 G A EXOSC2 Nonsense_Mutation p.W96* 0.29 TCGA-BB-7870-01 9 97087646 97087646 C A NUTM2F Missense_Mutation p.R196L 0.48 tolerated(0.21) benign(0) TCGA-BB-7870-01 X 105011716 105011716 A G IL1RAPL2 3'UTR 0.69 TCGA-BB-7870-01 X 119672603 119672603 G T CUL4B Missense_Mutation p.F606L 0.75 deleterious(0.01) possibly_damaging(0.523) TCGA-BB-7870-01 X 123518698 123518698 A T TENM1 Missense_Mutation p.L2028H 0.75 deleterious(0) probably_damaging(0.984) TCGA-BB-7870-01 X 133674401 133674401 G T MIR450A1 RNA 0.30 TCGA-BB-7870-01 X 140985531 140985531 C A MAGEC3 Silent p.A615A 0.79 TCGA-BB-7870-01 X 25028384 25028384 C G ARX Missense_Mutation p.R371P 0.77 deleterious(0) possibly_damaging(0.879) TCGA-BB-7870-01 X 37027442 37027442 C T FAM47C Missense_Mutation p.P320L 0.77 tolerated(0.11) possibly_damaging(0.474) TCGA-BB-7870-01 X 37265460 37265460 A C PRRG1 Splice_Site 0.77 TCGA-BB-7870-01 X 57618966 57618966 C T ZXDB Missense_Mutation p.A162V 0.68 deleterious(0.04) benign(0.073) TCGA-BB-7870-01 X 73962996 73962996 C A KIAA2022 Missense_Mutation p.D466Y 0.79 deleterious(0.01) possibly_damaging(0.9) TCGA-BB-7870-01 X 78616959 78616959 A C ITM2A Silent p.P190P 0.38 TCGA-BB-8596-01 10 121541144 121541144 C G INPP5F Intron 0.10 TCGA-BB-8596-01 10 134230574 134230574 G A PWWP2B 3'UTR 0.16 TCGA-BB-8596-01 10 71903626 71903626 G T TYSND1 Silent p.I423I 0.16 TCGA-BB-8596-01 11 110102759 110102759 C T RDX Splice_Site p.X530_splice 0.15 TCGA-BB-8596-01 11 113650687 113650687 G A CLDN25 Missense_Mutation p.R57Q 0.08 tolerated(1) benign(0.003) TCGA-BB-8596-01 11 56237425 56237425 G A OR5M3 Silent p.I183I 0.05 TCGA-BB-8596-01 11 58294906 58294906 G C LPXN 3'UTR 0.24 TCGA-BB-8596-01 11 67800624 67800624 C G NDUFS8 Missense_Mutation p.I82M 0.10 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-BB-8596-01 11 71725814 71725814 G C NUMA1 Missense_Mutation p.T912S 0.51 probably_damaging(0.998) TCGA-BB-8596-01 11 86666010 86666010 C T FZD4 Missense_Mutation p.E40K 0.09 tolerated(0.45) benign(0.029) TCGA-BB-8596-01 11 94554915 94554915 A G AMOTL1 Missense_Mutation p.I447M 0.09 tolerated(0.74) benign(0.062) TCGA-BB-8596-01 12 123481122 123481122 G A PITPNM2 Silent p.V555V 0.07 TCGA-BB-8596-01 12 28702043 28702043 C G CCDC91 Missense_Mutation p.F421L 0.10 tolerated(0.13) probably_damaging(0.991) TCGA-BB-8596-01 12 52760958 52760958 G A KRT85 Missense_Mutation p.R78C 0.08 tolerated(0.12) probably_damaging(0.993) TCGA-BB-8596-01 12 54403466 54403466 C T HOXC8 Missense_Mutation p.S133L 0.06 tolerated(0.1) benign(0.047) TCGA-BB-8596-01 12 7014828 7014828 G C LRRC23 Missense_Mutation p.E11Q 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-BB-8596-01 14 105174314 105174314 G A INF2 Silent p.Q570Q 0.15 TCGA-BB-8596-01 14 20389482 20389482 G T OR4K5 Silent p.T239T 0.14 TCGA-BB-8596-01 14 50846900 50846900 C T CDKL1 Intron 0.21 TCGA-BB-8596-01 14 77944952 77944952 G A ISM2 Silent p.T360T 0.19 TCGA-BB-8596-01 15 42041118 42041118 G A MGA Silent p.R1832R 0.13 TCGA-BB-8596-01 15 42041778 42041778 G A MGA Silent p.K1991K 0.11 TCGA-BB-8596-01 15 50330967 50330967 G T ATP8B4 Missense_Mutation p.S120R 0.15 tolerated(0.05) possibly_damaging(0.529) TCGA-BB-8596-01 15 88472443 88472443 G C NTRK3 Silent p.V704V 0.18 TCGA-BB-8596-01 16 23200873 23200873 G C SCNN1G Missense_Mutation p.E167Q 0.09 tolerated(0.24) benign(0.043) TCGA-BB-8596-01 16 57992361 57992361 C G CNGB1 Missense_Mutation p.E264Q 0.15 deleterious_low_confidence(0.05) probably_damaging(0.986) TCGA-BB-8596-01 16 69400744 69400744 G C TERF2 Missense_Mutation p.L394V 0.08 tolerated(0.61) benign(0.237) TCGA-BB-8596-01 16 71674711 71674711 G C MARVELD3 Missense_Mutation p.E338D 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-BB-8596-01 17 36064972 36064972 G C HNF1B Missense_Mutation p.Q431E 0.15 deleterious(0.01) possibly_damaging(0.481) TCGA-BB-8596-01 17 39616419 39616419 G C KRT32 Silent p.V430V 0.24 TCGA-BB-8596-01 17 57643053 57643053 C G DHX40 Silent p.V7V 0.13 TCGA-BB-8596-01 17 62226200 62226200 G C TEX2 3'UTR 0.15 TCGA-BB-8596-01 17 62796685 62796685 G A PLEKHM1P RNA 0.27 TCGA-BB-8596-01 17 74063379 74063379 C T SRP68 Missense_Mutation p.R95Q 0.11 deleterious(0.01) possibly_damaging(0.894) TCGA-BB-8596-01 17 79287357 79287357 G A TMEM105 3'UTR 0.22 TCGA-BB-8596-01 18 72173115 72173119 CTATT - CNDP2 Frame_Shift_Del p.I80Afs*51 0.15 TCGA-BB-8596-01 19 1556649 1556649 C T MEX3D Missense_Mutation p.G290E 0.23 deleterious(0) probably_damaging(0.999) TCGA-BB-8596-01 19 17327091 17327091 G A USE1 Silent p.A115A 0.27 TCGA-BB-8596-01 19 44118558 44118558 T C ZNF428 5'UTR 0.35 TCGA-BB-8596-01 19 50781460 50781460 G C MYH14 Missense_Mutation p.E1316Q 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-BB-8596-01 19 54755938 54755938 G A LILRB5 Silent p.D536D 0.29 TCGA-BB-8596-01 1 100741195 100741195 G A RTCA Missense_Mutation p.R232K 0.37 tolerated(0.44) benign(0.016) TCGA-BB-8596-01 1 150807017 150807017 A T ARNT Missense_Mutation p.M267K 0.06 deleterious(0) probably_damaging(0.999) TCGA-BB-8596-01 1 16352699 16352699 C G CLCNKA Missense_Mutation p.S152C 0.05 deleterious(0.03) benign(0.009) TCGA-BB-8596-01 1 165638641 165638641 T C ALDH9A1 Missense_Mutation p.D326G 0.09 tolerated(0.06) benign(0.007) TCGA-BB-8596-01 1 175355319 175355319 G A TNR Silent p.G542G 0.36 TCGA-BB-8596-01 1 19404540 19404540 T C UBR4 Missense_Mutation p.K5085R 0.28 benign(0.004) TCGA-BB-8596-01 1 206652357 206652357 A G IKBKE Missense_Mutation p.E355G 0.29 deleterious(0) possibly_damaging(0.899) TCGA-BB-8596-01 1 207222776 207222776 C T YOD1 Nonsense_Mutation p.W212* 0.05 TCGA-BB-8596-01 1 241797064 241797064 G A CHML 3'UTR 0.06 TCGA-BB-8596-01 1 248402920 248402920 T C OR2M4 Silent p.S230S 0.19 TCGA-BB-8596-01 1 35836031 35836031 G T ZMYM4 Missense_Mutation p.M328I 0.08 tolerated(0.49) benign(0.004) TCGA-BB-8596-01 1 36315806 36315806 A G AGO4 Missense_Mutation p.I742V 0.09 tolerated(0.26) benign(0.314) TCGA-BB-8596-01 1 57394958 57394958 A G C8B 3'UTR 0.24 TCGA-BB-8596-01 1 74715151 74715151 A C FPGT-TNNI3K Missense_Mutation p.E167A 0.24 deleterious_low_confidence(0.03) benign(0.23) TCGA-BB-8596-01 1 92447253 92447253 C G BRDT Nonsense_Mutation p.S648* 0.33 TCGA-BB-8596-01 20 31022345 31022345 C T ASXL1 Silent p.G610G 0.08 TCGA-BB-8596-01 20 57767475 57767475 G A ZNF831 Silent p.P467P 0.07 TCGA-BB-8596-01 20 62321751 62321751 G C RTEL1 Missense_Mutation p.K814N 0.11 tolerated(0.12) possibly_damaging(0.667) TCGA-BB-8596-01 22 32002333 32002333 A G SFI1 Missense_Mutation p.K692E 0.05 deleterious(0.02) benign(0.005) TCGA-BB-8596-01 22 33673130 33673130 C G LARGE Silent p.V663V 0.22 TCGA-BB-8596-01 22 36122515 36122515 C T APOL5 Missense_Mutation p.L134F 0.06 tolerated(0.71) benign(0.008) TCGA-BB-8596-01 22 36556749 36556749 G A APOL3 Missense_Mutation p.S64F 0.07 deleterious_low_confidence(0) benign(0.127) TCGA-BB-8596-01 22 41318410 41318410 C T XPNPEP3 Missense_Mutation p.P377S 0.11 tolerated(0.13) benign(0.024) TCGA-BB-8596-01 2 111419371 111419371 C G BUB1 Silent p.L335L 0.10 TCGA-BB-8596-01 2 178097110 178097110 T C NFE2L2 Intron 0.35 TCGA-BB-8596-01 2 179455600 179455600 A G TTN Silent p.T20284T 0.16 TCGA-BB-8596-01 2 179482515 179482515 C T TTN Missense_Mutation p.D15855N 0.21 TCGA-BB-8596-01 2 179483378 179483378 C G TTN Silent p.G15633G 0.09 TCGA-BB-8596-01 2 179546391 179546391 T C TTN Missense_Mutation p.K11057E 0.10 TCGA-BB-8596-01 2 201507423 201507423 T C AOX1 Missense_Mutation p.S916P 0.13 deleterious(0) benign(0.247) TCGA-BB-8596-01 2 204039938 204039938 C T NBEAL1 Missense_Mutation p.S2102F 0.12 deleterious(0) possibly_damaging(0.857) TCGA-BB-8596-01 2 210962878 210962878 G A KANSL1L Silent p.S494S 0.17 TCGA-BB-8596-01 2 242163542 242163542 C T ANO7 Missense_Mutation p.P926S 0.12 deleterious_low_confidence(0) benign(0.039) TCGA-BB-8596-01 2 39025462 39025462 C T DHX57 Silent p.V1380V 0.08 TCGA-BB-8596-01 2 58362327 58362327 C T VRK2 Silent p.S283S 0.14 TCGA-BB-8596-01 3 108355486 108355486 G C DZIP3 Missense_Mutation p.L314F 0.14 tolerated(0.29) probably_damaging(0.999) TCGA-BB-8596-01 3 190362143 190362143 C G IL1RAP Silent p.V386V 0.08 TCGA-BB-8596-01 3 194171001 194171001 T G ATP13A3 Silent p.I281I 0.14 TCGA-BB-8596-01 3 49292911 49292911 G A CCDC36 Silent p.K207K 0.18 TCGA-BB-8596-01 3 49293706 49293706 G A CCDC36 Missense_Mutation p.R259K 0.12 tolerated(0.77) benign(0.023) TCGA-BB-8596-01 3 49405953 49405953 C T RHOA Missense_Mutation p.G62E 0.17 deleterious(0) probably_damaging(0.952) TCGA-BB-8596-01 3 49716303 49716303 A T APEH Missense_Mutation p.Y360F 0.17 tolerated(0.07) benign(0.071) TCGA-BB-8596-01 4 119161817 119161817 G A NDST3 Missense_Mutation p.E753K 0.10 deleterious(0.02) possibly_damaging(0.618) TCGA-BB-8596-01 5 138661938 138661938 C A MATR3 Missense_Mutation p.H820N 0.13 deleterious(0) possibly_damaging(0.885) TCGA-BB-8596-01 5 156590665 156590665 G T FAM71B Missense_Mutation p.A204E 0.13 tolerated(0.1) benign(0.013) TCGA-BB-8596-01 5 41159288 41159288 C A C6 Silent p.S584S 0.34 TCGA-BB-8596-01 5 442703 442703 G C C5orf55 Missense_Mutation p.R79G 0.24 tolerated_low_confidence(0.42) benign(0.433) TCGA-BB-8596-01 6 127767648 127767648 C G KIAA0408 Missense_Mutation p.E606Q 0.15 deleterious(0.03) benign(0.341) TCGA-BB-8596-01 6 128563725 128563725 G C PTPRK Nonsense_Mutation p.S173* 0.19 TCGA-BB-8596-01 6 129691085 129691085 G C LAMA2 Missense_Mutation p.E1637Q 0.12 tolerated(0.27) benign(0.05) TCGA-BB-8596-01 6 170105832 170105832 G C C6orf120 3'UTR 0.13 TCGA-BB-8596-01 6 2833940 2833940 G A SERPINB1 Missense_Mutation p.P348S 0.15 tolerated(0.48) benign(0.038) TCGA-BB-8596-01 6 29054606 29054606 G A OR2B3 Silent p.F140F 0.22 TCGA-BB-8596-01 6 36168560 36168560 A G BRPF3 Missense_Mutation p.Y154C 0.18 deleterious(0) probably_damaging(1) TCGA-BB-8596-01 6 38905899 38905899 G A DNAH8 Missense_Mutation p.G3688R 0.15 probably_damaging(1) TCGA-BB-8596-01 6 45480097 45480097 G A RUNX2 Missense_Mutation p.R325Q 0.17 deleterious(0.05) probably_damaging(0.99) TCGA-BB-8596-01 6 76022592 76022592 A C FILIP1 Missense_Mutation p.F986V 0.20 tolerated(0.17) benign(0.004) TCGA-BB-8596-01 6 89888658 89888658 A G GABRR1 Missense_Mutation p.M424T 0.13 tolerated(0.49) benign(0.008) TCGA-BB-8596-01 7 100676068 100676068 G C MUC17 Missense_Mutation p.M457I 0.18 possibly_damaging(0.48) TCGA-BB-8596-01 7 158695177 158695177 A G WDR60 Missense_Mutation p.I416M 0.23 deleterious(0) possibly_damaging(0.703) TCGA-BB-8596-01 7 5023354 5023354 A G RBAK-RBAKDN 5'UTR 0.26 TCGA-BB-8596-01 7 55229200 55229200 G A EGFR Missense_Mutation p.G503S 0.15 deleterious(0.03) benign(0.061) TCGA-BB-8596-01 7 76871152 76871152 C G CCDC146 Silent p.L128L 0.27 TCGA-BB-8596-01 7 99689087 99689087 C G COPS6 Missense_Mutation p.L263V 0.19 deleterious(0.04) probably_damaging(0.994) TCGA-BB-8596-01 8 120650707 120650707 G C ENPP2 Missense_Mutation p.R32G 0.14 deleterious(0.04) possibly_damaging(0.884) TCGA-BB-8596-01 8 126087290 126087290 C T KIAA0196 Missense_Mutation p.A310T 0.07 deleterious(0) probably_damaging(1) TCGA-BB-8596-01 8 141685543 141685543 T A PTK2 Missense_Mutation p.N873I 0.14 deleterious(0.04) possibly_damaging(0.844) TCGA-BB-8596-01 8 22213004 22213004 C G PIWIL2 Missense_Mutation p.L970V 0.20 deleterious(0) probably_damaging(0.999) TCGA-BB-8596-01 8 30472202 30472202 G A GTF2E2 Silent p.L97L 0.16 TCGA-BB-8596-01 8 86360302 86360302 G T CA3 Nonsense_Mutation p.E235* 0.13 TCGA-BB-8596-01 9 107298658 107298658 C T OR13C3 Missense_Mutation p.G146D 0.13 deleterious(0) possibly_damaging(0.902) TCGA-BB-8596-01 9 139404312 139404312 C A NOTCH1 Nonsense_Mutation p.E948* 0.30 TCGA-BB-8596-01 9 95599380 95599380 C A ANKRD19P RNA 0.14 TCGA-BB-8596-01 X 129147516 129147516 G A BCORL1 Silent p.P256P 0.09 TCGA-BB-8596-01 X 153178906 153178906 C T ARHGAP4 Missense_Mutation p.R468Q 0.06 deleterious(0) possibly_damaging(0.722) TCGA-BB-8596-01 X 1584402 1584402 G A P2RY8 Silent p.P350P 0.15 TCGA-BB-8596-01 X 22117215 22117215 G A PHEX Missense_Mutation p.R342H 0.06 tolerated(0.06) probably_damaging(0.999) TCGA-BB-8596-01 X 75003750 75003750 G T MAGEE2 Silent p.L379L 0.19 TCGA-BB-8601-01 10 133761152 133761152 G A PPP2R2D Silent p.S282S 0.72 TCGA-BB-8601-01 10 24813481 24813481 C T KIAA1217 Missense_Mutation p.P896S 0.69 tolerated(0.23) possibly_damaging(0.492) TCGA-BB-8601-01 10 72489877 72489877 G A ADAMTS14 Missense_Mutation p.R325H 0.65 tolerated(0.22) benign(0.047) TCGA-BB-8601-01 11 102272718 102272718 G A TMEM123 Missense_Mutation p.S126F 0.28 deleterious(0.02) possibly_damaging(0.683) TCGA-BB-8601-01 11 118373938 118373938 A G KMT2A Missense_Mutation p.H2444R 0.33 benign(0.004) TCGA-BB-8601-01 11 134151992 134151992 A G GLB1L3 Missense_Mutation p.M169V 0.67 tolerated(0.29) benign(0.002) TCGA-BB-8601-01 11 31541612 31541612 T A ELP4 Nonsense_Mutation p.L78* 0.26 TCGA-BB-8601-01 11 46897149 46897149 G A LRP4 Silent p.L1261L 0.31 TCGA-BB-8601-01 11 9455160 9455160 C T IPO7 Missense_Mutation p.T642I 0.65 tolerated(0.4) benign(0.003) TCGA-BB-8601-01 12 10774533 10774533 G C STYK1 Missense_Mutation p.L336V 0.32 deleterious(0) probably_damaging(0.999) TCGA-BB-8601-01 12 109876392 109876392 A G MYO1H Missense_Mutation p.Q738R 0.26 tolerated(0.43) benign(0) TCGA-BB-8601-01 12 113559376 113559376 C A RASAL1 Silent p.L122L 0.52 TCGA-BB-8601-01 12 21531377 21531377 A G IAPP 3'UTR 0.22 TCGA-BB-8601-01 12 49942697 49942697 C T KCNH3 Silent p.A403A 0.16 TCGA-BB-8601-01 12 56975859 56975860 - A RBMS2 Nonsense_Mutation p.Y266* 0.21 TCGA-BB-8601-01 13 92797181 92797181 T C GPC5 Silent p.D500D 0.78 TCGA-BB-8601-01 14 105478059 105478059 G C CDCA4 Missense_Mutation p.Q70E 0.47 deleterious(0) probably_damaging(0.922) TCGA-BB-8601-01 14 22133973 22133973 G A OR4E2 Missense_Mutation p.R226Q 0.47 deleterious(0.04) benign(0.202) TCGA-BB-8601-01 14 77872436 77872436 T C NOXRED1 Missense_Mutation p.Y242C 0.30 deleterious(0) probably_damaging(0.982) TCGA-BB-8601-01 14 95923521 95923521 G T SYNE3 Missense_Mutation p.T261K 0.35 tolerated(0.17) benign(0.009) TCGA-BB-8601-01 15 100801716 100801716 C A ADAMTS17 Silent p.P333P 0.17 TCGA-BB-8601-01 15 56748690 56748690 G T MNS1 Silent p.L85L 0.22 TCGA-BB-8601-01 15 69347794 69347794 C T NOX5 Missense_Mutation p.T707M 0.51 deleterious(0.01) probably_damaging(0.992) TCGA-BB-8601-01 16 1718076 1718076 C A CRAMP1L Silent p.V1072V 0.16 TCGA-BB-8601-01 16 2347470 2347470 T C ABCA3 Missense_Mutation p.Q708R 0.67 deleterious(0.02) benign(0.179) TCGA-BB-8601-01 16 90001717 90001717 G A TUBB3 Silent p.V286V 0.06 TCGA-BB-8601-01 17 3182212 3182212 G A OR3A2 Silent p.L6L 0.43 TCGA-BB-8601-01 17 42745255 42745255 G A C17orf104 Missense_Mutation p.R659H 0.45 tolerated(0.55) benign(0.009) TCGA-BB-8601-01 17 49237412 49237412 A G NME1 Silent p.K91K 0.40 TCGA-BB-8601-01 17 58512697 58512697 G A C17orf64 3'Flank 0.49 TCGA-BB-8601-01 17 71165779 71165779 C - SSTR2 Frame_Shift_Del p.W108Gfs*12 0.31 TCGA-BB-8601-01 17 74097810 74097810 G T EXOC7 Silent p.V87V 0.39 TCGA-BB-8601-01 17 7576862 7576863 - A TP53 Frame_Shift_Ins p.T329Hfs*8 0.42 TCGA-BB-8601-01 18 43262351 43262351 A T SLC14A2 Missense_Mutation p.N877I 0.70 deleterious(0.04) probably_damaging(0.987) TCGA-BB-8601-01 19 17951143 17951143 A T JAK3 Missense_Mutation p.F384I 0.38 deleterious(0) probably_damaging(0.965) TCGA-BB-8601-01 19 19049612 19049612 C T HOMER3 Silent p.K32K 0.42 TCGA-BB-8601-01 19 6897559 6897559 G T EMR1 Splice_Site p.X172_splice 0.50 TCGA-BB-8601-01 1 152187504 152187504 G A HRNR Missense_Mutation p.H2201Y 0.06 unknown(0) TCGA-BB-8601-01 1 155449890 155449890 G C ASH1L Missense_Mutation p.S924C 0.48 deleterious_low_confidence(0.05) benign(0.015) TCGA-BB-8601-01 1 201972573 201972573 A T RNPEP Missense_Mutation p.K545N 0.36 tolerated(0.16) benign(0.158) TCGA-BB-8601-01 1 236228283 236228283 C A NID1 Nonsense_Mutation p.E33* 0.44 TCGA-BB-8601-01 1 45242249 45242249 A G RPS8 Intron 0.84 TCGA-BB-8601-01 1 79387450 79387450 G A ELTD1 Silent p.L369L 0.78 TCGA-BB-8601-01 22 31663761 31663761 G - LIMK2 Splice_Site p.X356_splice 0.29 TCGA-BB-8601-01 2 114482997 114482997 T C SLC35F5 Missense_Mutation p.N403S 0.54 deleterious(0) probably_damaging(0.933) TCGA-BB-8601-01 2 198368085 198368085 T C HSPE1 3'UTR 0.09 TCGA-BB-8601-01 2 225342966 225342966 C T CUL3 Missense_Mutation p.R709Q 0.85 deleterious(0) probably_damaging(1) TCGA-BB-8601-01 2 33590472 33590472 G A LTBP1 Missense_Mutation p.R1538Q 0.58 tolerated(0.43) benign(0.106) TCGA-BB-8601-01 2 97526300 97526300 G C SEMA4C 3'UTR 0.24 TCGA-BB-8601-01 3 121206858 121206858 T A POLQ Silent p.P1640P 0.19 TCGA-BB-8601-01 3 1269522 1269522 A T CNTN6 Missense_Mutation p.D68V 0.77 tolerated(0.2) benign(0.272) TCGA-BB-8601-01 3 129115896 129115896 T C EFCAB12 3'Flank 0.39 TCGA-BB-8601-01 3 160942823 160942823 C T NMD3 Silent p.V50V 0.31 TCGA-BB-8601-01 3 169831259 169831259 G C PHC3 Missense_Mutation p.L748V 0.38 tolerated(0.07) benign(0.005) TCGA-BB-8601-01 3 184049828 184049828 G T EIF4G1 Silent p.A1531A 0.22 TCGA-BB-8601-01 3 32995557 32995557 T C CCR4 Silent p.L215L 0.80 TCGA-BB-8601-01 3 48698278 48698281 CTGT - CELSR3 Frame_Shift_Del p.D596Afs*94 0.73 TCGA-BB-8601-01 3 93733420 93733420 G A STX19 Missense_Mutation p.L232F 0.34 deleterious(0.01) benign(0.29) TCGA-BB-8601-01 4 119951816 119951816 C A SYNPO2 Missense_Mutation p.P629H 0.70 deleterious(0) probably_damaging(0.987) TCGA-BB-8601-01 4 145640051 145640051 G A HHIP Missense_Mutation p.S568N 0.73 tolerated(0.08) benign(0.002) TCGA-BB-8601-01 4 153253749 153253750 - T FBXW7 Frame_Shift_Ins p.I330Dfs*2 0.38 TCGA-BB-8601-01 5 156753240 156753240 A T CYFIP2 Nonsense_Mutation p.K656* 0.72 TCGA-BB-8601-01 5 45353231 45353231 G A HCN1 Missense_Mutation p.L450F 0.35 deleterious(0.02) probably_damaging(0.975) TCGA-BB-8601-01 5 86676366 86676366 C T RASA1 Nonsense_Mutation p.Q882* 0.73 TCGA-BB-8601-01 6 111214719 111214719 T C AMD1 Missense_Mutation p.I302T 0.50 tolerated(0.18) benign(0.128) TCGA-BB-8601-01 6 130415450 130415450 C T L3MBTL3 Silent p.C558C 0.44 TCGA-BB-8601-01 6 32063534 32063534 C A TNXB Missense_Mutation p.R699L 0.62 benign(0.106) TCGA-BB-8601-01 6 42608004 42608004 C T UBR2 Missense_Mutation p.P639L 0.37 tolerated(0.06) benign(0.05) TCGA-BB-8601-01 6 5613479 5613479 C G FARS2 Missense_Mutation p.F381L 0.25 deleterious(0.04) probably_damaging(0.977) TCGA-BB-8601-01 7 103155716 103155716 C G RELN Missense_Mutation p.V2679L 0.42 tolerated(1) benign(0.001) TCGA-BB-8601-01 7 133602448 133602448 A G EXOC4 Missense_Mutation p.K662E 0.37 tolerated(0.11) benign(0.058) TCGA-BB-8601-01 7 142378659 142378659 T G MTRNR2L6 3'Flank 0.36 TCGA-BB-8601-01 7 148978841 148978841 C A ZNF783 Missense_Mutation p.P350T 0.50 tolerated(0.74) benign(0.042) TCGA-BB-8601-01 7 155100085 155100085 G A INSIG1 3'UTR 0.28 TCGA-BB-8601-01 7 57193797 57193797 A G ZNF479 Silent p.L64L 0.26 TCGA-BB-8601-01 7 959664 959664 C T ADAP1 Missense_Mutation p.R110Q 0.37 deleterious(0) probably_damaging(0.95) TCGA-BB-8601-01 8 141461118 141461118 C T TRAPPC9 Missense_Mutation p.G217R 0.42 deleterious(0) probably_damaging(0.999) TCGA-BB-8601-01 8 30703211 30703211 C A TEX15 Missense_Mutation p.S1108I 0.39 tolerated(0.32) benign(0.032) TCGA-BB-8601-01 8 59409583 59409583 G A CYP7A1 Missense_Mutation p.T163I 0.42 tolerated(0.17) benign(0.015) TCGA-BB-8601-01 8 62212794 62212794 C T CLVS1 Silent p.Y136Y 0.45 TCGA-BB-8601-01 8 73850051 73850051 G A KCNB2 Missense_Mutation p.A821T 0.37 tolerated_low_confidence(0.59) benign(0) TCGA-BB-8601-01 8 8748872 8748872 G A MFHAS1 Missense_Mutation p.A566V 0.32 tolerated(0.59) benign(0.006) TCGA-BB-8601-01 9 113704016 113704016 T C LPAR1 Missense_Mutation p.S160G 0.47 deleterious(0.01) probably_damaging(0.992) TCGA-BB-8601-01 X 1506193 1506193 T A SLC25A6 Missense_Mutation p.M240L 0.59 deleterious(0.04) benign(0.34) TCGA-BB-A5HU-01 10 105218537 105218537 C G CALHM1 5'UTR 0.16 TCGA-BB-A5HU-01 10 105781404 105781404 G A SLK Silent p.E1158E 0.07 TCGA-BB-A5HU-01 10 116919891 116919891 C T ATRNL1 Missense_Mutation p.S307L 0.10 tolerated(0.13) probably_damaging(0.996) TCGA-BB-A5HU-01 10 123970124 123970124 C T TACC2 Nonsense_Mutation p.Q2062* 0.26 TCGA-BB-A5HU-01 10 15689001 15689001 C T ITGA8 Missense_Mutation p.E351K 0.39 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 10 45941106 45941106 G C ALOX5 Missense_Mutation p.D666H 0.10 tolerated(0.12) benign(0.374) TCGA-BB-A5HU-01 10 5948426 5948426 C G FBXO18 Nonsense_Mutation p.S246* 0.27 TCGA-BB-A5HU-01 10 76739009 76739009 G A KAT6B Missense_Mutation p.D715N 0.08 benign(0.005) TCGA-BB-A5HU-01 10 81072505 81072505 G A ZMIZ1 Silent p.%3D 0.30 TCGA-BB-A5HU-01 10 88414348 88414348 G A OPN4 5'UTR 0.25 TCGA-BB-A5HU-01 11 1857283 1857283 G A SYT8 Intron 0.14 TCGA-BB-A5HU-01 11 40137376 40137376 C T LRRC4C Missense_Mutation p.R156Q 0.10 deleterious(0.04) probably_damaging(0.98) TCGA-BB-A5HU-01 11 47311465 47311465 G A MADD Missense_Mutation p.G955D 0.16 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 11 57982336 57982336 C G OR1S1 Silent p.L40L 0.28 TCGA-BB-A5HU-01 11 60197085 60197085 G C MS4A5 5'UTR 0.12 TCGA-BB-A5HU-01 11 65417892 65417892 C G SIPA1 Nonsense_Mutation p.S975* 0.09 TCGA-BB-A5HU-01 11 70331681 70331681 C T SHANK2 Missense_Mutation p.D1574N 0.11 tolerated(0.08) possibly_damaging(0.539) TCGA-BB-A5HU-01 11 70331687 70331687 C T SHANK2 Missense_Mutation p.D1572N 0.11 tolerated(0.39) benign(0) TCGA-BB-A5HU-01 11 70331690 70331690 C T SHANK2 Missense_Mutation p.E1571K 0.11 deleterious(0.01) benign(0.292) TCGA-BB-A5HU-01 12 107075893 107075893 A G RFX4 Intron 0.16 TCGA-BB-A5HU-01 12 109677702 109677702 A T ACACB Missense_Mutation p.E1577V 0.16 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 12 11506284 11506284 A C PRB1 Silent p.P118P 0.10 TCGA-BB-A5HU-01 12 118520021 118520021 G A VSIG10 Missense_Mutation p.S192L 0.14 deleterious(0.02) benign(0.418) TCGA-BB-A5HU-01 12 12334167 12334167 G A LRP6 Nonsense_Mutation p.Q395* 0.11 TCGA-BB-A5HU-01 12 125432580 125432580 C T DHX37 Intron 0.36 TCGA-BB-A5HU-01 12 130912804 130912804 C T RIMBP2 Missense_Mutation p.E761K 0.29 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HU-01 12 18658283 18658283 G C PIK3C2G Missense_Mutation p.G1030R 0.19 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 12 50037079 50037079 C T PRPF40B Missense_Mutation p.S760L 0.17 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-BB-A5HU-01 12 52711548 52711548 C T KRT83 Missense_Mutation p.A223T 0.21 deleterious(0.02) benign(0.178) TCGA-BB-A5HU-01 12 53911088 53911088 G A ATF7 Nonsense_Mutation p.Q429* 0.20 TCGA-BB-A5HU-01 12 6952678 6952678 C G GNB3 Missense_Mutation p.S140C 0.18 deleterious(0.01) benign(0.012) TCGA-BB-A5HU-01 12 76740853 76740853 C T BBS10 Silent p.Q304Q 0.19 TCGA-BB-A5HU-01 12 78531100 78531100 C G NAV3 Missense_Mutation p.R1529G 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-BB-A5HU-01 12 78593297 78593297 C G NAV3 Missense_Mutation p.S2212C 0.12 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HU-01 12 81613830 81613830 C T ACSS3 Missense_Mutation p.R497W 0.11 deleterious(0) probably_damaging(0.932) TCGA-BB-A5HU-01 13 32841311 32841311 G A FRY Missense_Mutation p.G2651R 0.11 tolerated(0.21) benign(0.025) TCGA-BB-A5HU-01 13 36229032 36229032 C T NBEA Silent p.L2671L 0.19 TCGA-BB-A5HU-01 13 67801135 67801135 C T PCDH9 Missense_Mutation p.E480K 0.15 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 13 77460092 77460092 G A KCTD12 Silent p.F64F 0.29 TCGA-BB-A5HU-01 14 100801248 100801248 G C WARS Missense_Mutation p.F460L 0.22 deleterious(0) probably_damaging(0.949) TCGA-BB-A5HU-01 14 101004846 101004846 C G BEGAIN Missense_Mutation p.M414I 0.10 tolerated(0.21) benign(0.001) TCGA-BB-A5HU-01 14 102489170 102489170 G C DYNC1H1 Missense_Mutation p.E2864Q 0.20 benign(0.006) TCGA-BB-A5HU-01 14 105410637 105410637 G C AHNAK2 Silent p.L3717L 0.35 TCGA-BB-A5HU-01 14 21024726 21024726 C A RNASE9 Missense_Mutation p.C173F 0.10 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 14 23314558 23314558 T A MMP14 Missense_Mutation p.F467Y 0.31 deleterious(0.04) probably_damaging(0.926) TCGA-BB-A5HU-01 14 24878576 24878576 C T NYNRIN Nonsense_Mutation p.Q526* 0.10 TCGA-BB-A5HU-01 14 24974771 24974771 C T CMA1 Missense_Mutation p.R232Q 0.14 tolerated(0.05) probably_damaging(0.975) TCGA-BB-A5HU-01 14 45686255 45686255 G A MIS18BP1 Silent p.F990F 0.12 TCGA-BB-A5HU-01 14 59757989 59757989 G A DAAM1 Missense_Mutation p.E80K 0.37 deleterious(0) unknown(0) TCGA-BB-A5HU-01 14 64596788 64596788 G A SYNE2 Missense_Mutation p.G4721E 0.30 probably_damaging(0.964) TCGA-BB-A5HU-01 14 68151846 68151846 C G RDH11 Missense_Mutation p.R247T 0.10 tolerated(0.6) benign(0.002) TCGA-BB-A5HU-01 14 94750267 94750267 C G SERPINA10 3'UTR 0.32 TCGA-BB-A5HU-01 14 94756848 94756848 G C SERPINA10 Missense_Mutation p.S28W 0.41 deleterious(0.01) possibly_damaging(0.825) TCGA-BB-A5HU-01 15 34356456 34356456 G A CHRM5 Missense_Mutation p.R513Q 0.15 tolerated(1) benign(0.001) TCGA-BB-A5HU-01 15 40588791 40588791 C T PLCB2 Missense_Mutation p.E511K 0.13 tolerated(0.7) benign(0.097) TCGA-BB-A5HU-01 15 41193186 41193186 G A VPS18 Missense_Mutation p.E724K 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-BB-A5HU-01 15 41601907 41601907 G C OIP5 3'UTR 0.22 TCGA-BB-A5HU-01 15 42116199 42116199 G A MAPKBP1 Missense_Mutation p.E1391K 0.04 tolerated(0.36) probably_damaging(0.913) TCGA-BB-A5HU-01 15 79291097 79291097 C G RASGRF1 Missense_Mutation p.L955F 0.13 deleterious(0.01) possibly_damaging(0.886) TCGA-BB-A5HU-01 15 90172250 90172250 C G KIF7 Silent p.L1207L 0.14 TCGA-BB-A5HU-01 15 93588297 93588297 C T RGMA Silent p.L436L 0.23 TCGA-BB-A5HU-01 16 10575769 10575769 G A ATF7IP2 Missense_Mutation p.R571Q 0.09 tolerated(0.14) possibly_damaging(0.571) TCGA-BB-A5HU-01 16 15692843 15692843 C T KIAA0430 Missense_Mutation p.D1618N 0.23 tolerated(1) benign(0.001) TCGA-BB-A5HU-01 16 30369853 30369853 C T TBC1D10B Silent p.E613E 0.18 TCGA-BB-A5HU-01 16 30748954 30748954 A C SRCAP Silent p.P2531P 0.09 TCGA-BB-A5HU-01 16 312193 312193 G C ITFG3 Missense_Mutation p.R270S 0.25 tolerated(0.15) benign(0.109) TCGA-BB-A5HU-01 16 3188497 3188497 G A ZNF213 Missense_Mutation p.A160T 0.12 tolerated(0.32) benign(0.007) TCGA-BB-A5HU-01 16 3580624 3580624 G C CLUAP1 Missense_Mutation p.E329Q 0.31 tolerated(0.09) benign(0.066) TCGA-BB-A5HU-01 16 57760012 57760012 G A CCDC135 Silent p.A597A 0.23 TCGA-BB-A5HU-01 16 67400972 67400972 G A LRRC36 Missense_Mutation p.M269I 0.14 deleterious(0.01) benign(0.373) TCGA-BB-A5HU-01 16 74729454 74729454 C A MLKL Missense_Mutation p.A68S 0.12 deleterious(0.01) benign(0.206) TCGA-BB-A5HU-01 16 89764256 89764256 G A SPATA2L Missense_Mutation p.P254L 0.21 tolerated(0.15) benign(0.177) TCGA-BB-A5HU-01 16 9858337 9858337 G A GRIN2A Missense_Mutation p.R1022C 0.31 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BB-A5HU-01 17 26962072 26962072 G A KIAA0100 Nonsense_Mutation p.Q845* 0.18 TCGA-BB-A5HU-01 17 33339032 33339032 G C RFFL Missense_Mutation p.I349M 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-BB-A5HU-01 17 36895318 36895318 C T PCGF2 Intron 0.17 TCGA-BB-A5HU-01 17 37868215 37868215 C G ERBB2 Silent p.T312T 0.13 TCGA-BB-A5HU-01 17 39021192 39021192 G A KRT12 Missense_Mutation p.R225C 0.18 tolerated(0.08) benign(0.061) TCGA-BB-A5HU-01 17 46030325 46030325 G C PRR15L Silent p.L92L 0.09 TCGA-BB-A5HU-01 17 4636506 4636506 G A MED11 3'UTR 0.48 TCGA-BB-A5HU-01 17 4849164 4849164 G A PFN1 3'UTR 0.41 TCGA-BB-A5HU-01 17 62022765 62022765 G C SCN4A Silent p.V1225V 0.39 TCGA-BB-A5HU-01 17 65103405 65103405 G T HELZ Missense_Mutation p.H1707Q 0.14 tolerated_low_confidence(0.19) unknown(0) TCGA-BB-A5HU-01 17 73729698 73729698 G A ITGB4 Missense_Mutation p.E528K 0.22 tolerated(0.13) benign(0.426) TCGA-BB-A5HU-01 17 7578402 7578402 G A TP53 Silent p.C176C 0.47 TCGA-BB-A5HU-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.45 deleterious(0) probably_damaging(0.995) TCGA-BB-A5HU-01 18 12277158 12277158 G A CIDEA Silent p.V183V 0.21 TCGA-BB-A5HU-01 18 6239864 6239864 G C L3MBTL4 Missense_Mutation p.P187R 0.20 tolerated(0.07) benign(0.246) TCGA-BB-A5HU-01 18 7012122 7012122 G A LAMA1 Missense_Mutation p.P1127S 0.49 tolerated(0.51) benign(0.012) TCGA-BB-A5HU-01 19 10439531 10439531 C T RAVER1 Missense_Mutation p.M198I 0.15 deleterious(0) probably_damaging(0.984) TCGA-BB-A5HU-01 19 11474442 11474442 C G DKFZP761J1410 Silent p.L273L 0.12 TCGA-BB-A5HU-01 19 12155088 12155088 G A ZNF878 Silent p.F376F 0.16 TCGA-BB-A5HU-01 19 12978692 12978692 C T MAST1 Missense_Mutation p.P823S 0.22 tolerated_low_confidence(0.14) benign(0.015) TCGA-BB-A5HU-01 19 19165128 19165128 C T ARMC6 Nonsense_Mutation p.Q341* 0.15 TCGA-BB-A5HU-01 19 22235293 22235293 C T ZNF257 5'UTR 0.18 TCGA-BB-A5HU-01 19 35616130 35616130 G C LGI4 Missense_Mutation p.I527M 0.14 deleterious(0) possibly_damaging(0.792) TCGA-BB-A5HU-01 19 37405914 37405914 C G ZNF829 Missense_Mutation p.E98Q 0.07 tolerated(0.34) benign(0.018) TCGA-BB-A5HU-01 19 42791373 42791373 G C CIC Missense_Mutation p.E145Q 0.16 probably_damaging(0.972) TCGA-BB-A5HU-01 19 49232825 49232825 G A RASIP1 Missense_Mutation p.T401M 0.15 tolerated(0.07) benign(0.101) TCGA-BB-A5HU-01 19 50482215 50482215 C T VRK3 Intron 0.50 TCGA-BB-A5HU-01 19 52448568 52448568 C G ZNF613 Missense_Mutation p.H478D 0.31 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HU-01 19 58102679 58102679 C G ZIK1 3'UTR 0.16 TCGA-BB-A5HU-01 1 144952059 144952059 G A PDE4DIP Intron 0.08 TCGA-BB-A5HU-01 1 153955865 153955874 GGCCATGTTG - RAB13 Intron 0.11 TCGA-BB-A5HU-01 1 15541866 15541866 G T TMEM51 Nonsense_Mutation p.E95* 0.29 TCGA-BB-A5HU-01 1 155829386 155829386 G C SYT11 5'UTR 0.28 TCGA-BB-A5HU-01 1 155837784 155837784 C T SYT11 Silent p.I21I 0.12 TCGA-BB-A5HU-01 1 159019275 159019275 G A IFI16 Intron 0.06 TCGA-BB-A5HU-01 1 160000201 160000201 C T PIGM 3'UTR 0.29 TCGA-BB-A5HU-01 1 163044203 163044203 C G RGS4 Missense_Mutation p.F254L 0.12 deleterious(0.02) possibly_damaging(0.814) TCGA-BB-A5HU-01 1 16456780 16456780 G A EPHA2 Silent p.I870I 0.14 TCGA-BB-A5HU-01 1 16456789 16456789 G A EPHA2 Silent p.I867I 0.18 TCGA-BB-A5HU-01 1 173839393 173839393 G T ZBTB37 Missense_Mutation p.E10D 0.13 tolerated(1) benign(0.004) TCGA-BB-A5HU-01 1 180031466 180031466 C A CEP350 Missense_Mutation p.Q1792K 0.14 benign(0.21) TCGA-BB-A5HU-01 1 183091075 183091075 G C LAMC1 Missense_Mutation p.E736D 0.33 tolerated(0.49) benign(0.06) TCGA-BB-A5HU-01 1 186315292 186315292 C T TPR Missense_Mutation p.R1024K 0.22 benign(0) TCGA-BB-A5HU-01 1 19525298 19525298 G C UBR4 Nonsense_Mutation p.S168* 0.27 TCGA-BB-A5HU-01 1 19705096 19705096 C T CAPZB Silent p.P89P 0.16 TCGA-BB-A5HU-01 1 200867570 200867570 C T C1orf106 Silent p.I14I 0.25 TCGA-BB-A5HU-01 1 2160602 2160602 G T SKI Missense_Mutation p.D133Y 0.15 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 1 223943283 223943283 C G CAPN2 Missense_Mutation p.Q413E 0.34 deleterious(0.01) probably_damaging(0.963) TCGA-BB-A5HU-01 1 228003458 228003458 C T PRSS38 Missense_Mutation p.S14F 0.26 tolerated_low_confidence(0.38) unknown(0) TCGA-BB-A5HU-01 1 237841360 237841360 G A RYR2 Missense_Mutation p.R2948K 0.20 benign(0.059) TCGA-BB-A5HU-01 1 245850699 245850699 G A KIF26B Missense_Mutation p.A1472T 0.25 tolerated(0.66) unknown(0) TCGA-BB-A5HU-01 1 247582139 247582139 G C NLRP3 Missense_Mutation p.E15Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HU-01 1 248367272 248367272 C G OR2M3 Missense_Mutation p.F301L 0.29 tolerated(1) benign(0.002) TCGA-BB-A5HU-01 1 26510920 26510920 G A CNKSR1 Silent p.L343L 0.22 TCGA-BB-A5HU-01 1 33237407 33237407 C T KIAA1522 Missense_Mutation p.A876V 0.10 tolerated(0.66) benign(0.271) TCGA-BB-A5HU-01 1 43770753 43770753 C G TIE1 Missense_Mutation p.S97W 0.41 deleterious(0.03) possibly_damaging(0.88) TCGA-BB-A5HU-01 1 47607908 47607908 G T CYP4A22 Splice_Site p.X170_splice 0.10 TCGA-BB-A5HU-01 1 68512251 68512251 C T DIRAS3 3'UTR 0.32 TCGA-BB-A5HU-01 1 86591642 86591642 C G COL24A1 Missense_Mutation p.R126T 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-BB-A5HU-01 1 93602595 93602595 G C MTF2 3'UTR 0.29 TCGA-BB-A5HU-01 20 34242341 34242341 C G RBM12 Missense_Mutation p.D302H 0.32 deleterious(0) probably_damaging(0.998) TCGA-BB-A5HU-01 20 43378877 43378877 C T KCNK15 Missense_Mutation p.R131W 0.32 deleterious(0.01) benign(0.337) TCGA-BB-A5HU-01 20 43933166 43933166 C G MATN4 Silent p.L115L 0.30 TCGA-BB-A5HU-01 22 22868977 22868977 C T ZNF280A Silent p.R326R 0.32 TCGA-BB-A5HU-01 22 26995607 26995607 G A CRYBB1 Silent p.R202R 0.25 TCGA-BB-A5HU-01 22 37882050 37882050 C T MFNG Missense_Mutation p.V56I 0.24 tolerated(0.75) benign(0.075) TCGA-BB-A5HU-01 22 39917519 39917519 G C ATF4 Silent p.S23S 0.11 TCGA-BB-A5HU-01 22 50955877 50955877 G A NCAPH2 Missense_Mutation p.V78I 0.15 deleterious(0.04) probably_damaging(0.909) TCGA-BB-A5HU-01 2 109489982 109489982 C T CCDC138 Missense_Mutation p.P590L 0.14 deleterious(0) possibly_damaging(0.851) TCGA-BB-A5HU-01 2 128351213 128351213 C T MYO7B Silent p.F746F 0.13 TCGA-BB-A5HU-01 2 136579750 136579750 C G LCT Intron 0.16 TCGA-BB-A5HU-01 2 168099105 168099105 C G XIRP2 Missense_Mutation p.F401L 0.12 benign(0) TCGA-BB-A5HU-01 2 170938300 170938300 C G UBR3 Missense_Mutation p.H1872D 0.11 deleterious(0) probably_damaging(0.985) TCGA-BB-A5HU-01 2 179433158 179433158 C T TTN Missense_Mutation p.D25901N 0.20 TCGA-BB-A5HU-01 2 179477226 179477226 C G TTN Missense_Mutation p.E16676Q 0.18 TCGA-BB-A5HU-01 2 1855422 1855422 G C MYT1L Missense_Mutation p.S920C 0.10 deleterious(0) probably_damaging(0.967) TCGA-BB-A5HU-01 2 207173957 207173957 G C ZDBF2 Missense_Mutation p.D1569H 0.26 tolerated(0.07) possibly_damaging(0.861) TCGA-BB-A5HU-01 2 21232630 21232630 C T APOB Silent p.L2370L 0.19 TCGA-BB-A5HU-01 2 220102441 220102441 C T GLB1L Silent p.L494L 0.30 TCGA-BB-A5HU-01 2 238672203 238672203 G A LRRFIP1 Missense_Mutation p.R616K 0.18 tolerated(1) benign(0) TCGA-BB-A5HU-01 2 241494435 241494435 C T ANKMY1 5'UTR 0.27 TCGA-BB-A5HU-01 2 24480820 24480820 C T ITSN2 Missense_Mutation p.G942E 0.11 tolerated(0.86) unknown(0) TCGA-BB-A5HU-01 2 24927966 24927966 G A NCOA1 Missense_Mutation p.G321S 0.25 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 2 29072992 29072992 G A TRMT61B 3'UTR 0.24 TCGA-BB-A5HU-01 2 95515045 95515045 T C RNU6-1320P 5'Flank 0.12 TCGA-BB-A5HU-01 3 100295884 100295884 T C TMEM45A 3'UTR 0.27 TCGA-BB-A5HU-01 3 108278852 108278852 C T KIAA1524 Silent p.V617V 0.12 TCGA-BB-A5HU-01 3 124746348 124746348 G A HEG1 Missense_Mutation p.S205L 0.29 tolerated_low_confidence(1) benign(0) TCGA-BB-A5HU-01 3 128852992 128852992 C A ISY1 Silent p.R218R 0.28 TCGA-BB-A5HU-01 3 156009685 156009685 C T KCNAB1 Intron 0.27 TCGA-BB-A5HU-01 3 169513978 169513978 G C LRRC34 Intron 0.33 TCGA-BB-A5HU-01 3 170216564 170216564 G C SLC7A14 Silent p.L217L 0.22 TCGA-BB-A5HU-01 3 184033212 184033212 A G EIF4G1 5'UTR 0.23 TCGA-BB-A5HU-01 3 186256703 186256703 G C CRYGS Missense_Mutation p.Q107E 0.17 tolerated(0.05) benign(0.185) TCGA-BB-A5HU-01 3 189688630 189688630 G A LEPREL1 Missense_Mutation p.T623I 0.23 deleterious(0) probably_damaging(0.926) TCGA-BB-A5HU-01 3 33661222 33661222 G A CLASP2 Missense_Mutation p.S398L 0.23 deleterious(0) benign(0.326) TCGA-BB-A5HU-01 3 39374086 39374086 C T CCR8 Silent p.F88F 0.16 TCGA-BB-A5HU-01 3 42799702 42799702 C T CCDC13 Missense_Mutation p.D46N 0.28 tolerated(0.43) benign(0.024) TCGA-BB-A5HU-01 3 44938204 44938204 G C TGM4 Missense_Mutation p.E185Q 0.29 deleterious(0.03) possibly_damaging(0.788) TCGA-BB-A5HU-01 3 45127156 45127156 G C CDCP1 Missense_Mutation p.Q829E 0.20 tolerated(0.07) benign(0.117) TCGA-BB-A5HU-01 3 85851334 85851334 G C CADM2 Missense_Mutation p.D69H 0.15 deleterious(0.04) benign(0.003) TCGA-BB-A5HU-01 3 97983171 97983171 G A OR5H6 Missense_Mutation p.E15K 0.18 tolerated_low_confidence(0.87) benign(0.005) TCGA-BB-A5HU-01 4 10099491 10099491 A C WDR1 Missense_Mutation p.D134E 0.15 tolerated(0.33) benign(0.173) TCGA-BB-A5HU-01 4 125590426 125590426 G C ANKRD50 Missense_Mutation p.Q1336E 0.11 tolerated_low_confidence(0.74) benign(0.011) TCGA-BB-A5HU-01 4 126411726 126411726 C T FAT4 Silent p.I4583I 0.15 TCGA-BB-A5HU-01 4 128865003 128865003 C T MFSD8 Missense_Mutation p.V115M 0.16 deleterious(0) probably_damaging(0.986) TCGA-BB-A5HU-01 4 140270652 140270652 C T NAA15 Missense_Mutation p.A243V 0.18 deleterious(0) possibly_damaging(0.794) TCGA-BB-A5HU-01 4 1719932 1719932 G A TMEM129 Silent p.L209L 0.20 TCGA-BB-A5HU-01 4 185550591 185550591 C T CASP3 Silent p.L223L 0.31 TCGA-BB-A5HU-01 4 20535220 20535220 G A SLIT2 Missense_Mutation p.D572N 0.08 tolerated(0.16) probably_damaging(0.998) TCGA-BB-A5HU-01 4 4322525 4322525 G C ZBTB49 Missense_Mutation p.D594H 0.13 tolerated(0.14) benign(0.268) TCGA-BB-A5HU-01 4 44626764 44626764 C T YIPF7 Missense_Mutation p.M178I 0.19 tolerated(1) benign(0.002) TCGA-BB-A5HU-01 4 48546828 48546828 C A FRYL Silent p.V1791V 0.24 TCGA-BB-A5HU-01 4 62453119 62453119 G A LPHN3 Missense_Mutation p.R77Q 0.21 tolerated(0.98) probably_damaging(0.997) TCGA-BB-A5HU-01 4 73161471 73161471 T C ADAMTS3 Missense_Mutation p.K875E 0.13 deleterious(0.01) possibly_damaging(0.714) TCGA-BB-A5HU-01 5 140263604 140263604 C T PCDHA13 Missense_Mutation p.S584L 0.13 deleterious_low_confidence(0.04) benign(0.077) TCGA-BB-A5HU-01 5 140532031 140532031 A G PCDHB6 Silent p.P731P 0.08 TCGA-BB-A5HU-01 5 140720688 140720688 G A PCDHGA2 Missense_Mutation p.R717Q 0.23 tolerated_low_confidence(0.08) benign(0.124) TCGA-BB-A5HU-01 5 140740503 140740503 C T PCDHGB2 Silent p.T267T 0.27 TCGA-BB-A5HU-01 5 140797757 140797757 G A PCDHGB7 Missense_Mutation p.E111K 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-BB-A5HU-01 5 141244793 141244793 C T PCDH1 Missense_Mutation p.S368N 0.27 tolerated(0.05) possibly_damaging(0.713) TCGA-BB-A5HU-01 5 16465250 16465250 C T ZNF622 Silent p.E175E 0.27 TCGA-BB-A5HU-01 5 168119691 168119691 C G SLIT3 Missense_Mutation p.E1033Q 0.20 tolerated(0.25) possibly_damaging(0.814) TCGA-BB-A5HU-01 5 169805555 169805555 C G KCNMB1 3'UTR 0.35 TCGA-BB-A5HU-01 5 178369801 178369801 C G ZNF454 Silent p.V3V 0.17 TCGA-BB-A5HU-01 5 180665325 180665325 C G GNB2L1 Intron 0.13 TCGA-BB-A5HU-01 5 32789918 32789918 C T NPR3 3'UTR 0.21 TCGA-BB-A5HU-01 5 37815895 37815895 C G GDNF Missense_Mutation p.R182T 0.16 tolerated(0.11) benign(0.181) TCGA-BB-A5HU-01 5 80809449 80809449 G A SSBP2 Nonsense_Mutation p.Q124* 0.12 TCGA-BB-A5HU-01 5 82837879 82837879 C T VCAN Silent p.I3019I 0.34 TCGA-BB-A5HU-01 5 88047711 88047711 A T MEF2C Silent p.P202P 0.16 TCGA-BB-A5HU-01 6 100911253 100911253 G A SIM1 Missense_Mutation p.S31L 0.16 deleterious(0.01) benign(0.216) TCGA-BB-A5HU-01 6 117890829 117890829 C T GOPC Missense_Mutation p.G328E 0.14 tolerated(0.11) possibly_damaging(0.612) TCGA-BB-A5HU-01 6 169623544 169623544 C G THBS2 Missense_Mutation p.D934H 0.22 deleterious(0.02) probably_damaging(0.974) TCGA-BB-A5HU-01 6 27424635 27424635 C G ZNF184 Missense_Mutation p.E90Q 0.29 tolerated(0.19) benign(0.057) TCGA-BB-A5HU-01 6 28212905 28212905 G C ZKSCAN4 Missense_Mutation p.L543V 0.25 tolerated(0.13) benign(0.021) TCGA-BB-A5HU-01 6 31779372 31779372 C G HSPA1L Missense_Mutation p.L126F 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BB-A5HU-01 6 36270066 36270066 C T PNPLA1 Nonsense_Mutation p.Q402* 0.16 TCGA-BB-A5HU-01 6 41160555 41160555 C T TREML2 Silent p.K290K 0.19 TCGA-BB-A5HU-01 6 79650558 79650558 C T PHIP Missense_Mutation p.R1773Q 0.12 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-BB-A5HU-01 6 79656513 79656513 G C PHIP Missense_Mutation p.L1429V 0.11 tolerated(0.76) possibly_damaging(0.696) TCGA-BB-A5HU-01 7 107875086 107875086 A G NRCAM Silent p.I57I 0.12 TCGA-BB-A5HU-01 7 122342732 122342732 G A RNF148 Silent p.L25L 0.19 TCGA-BB-A5HU-01 7 122757637 122757637 A T SLC13A1 Missense_Mutation p.L513H 0.08 deleterious(0) probably_damaging(1) TCGA-BB-A5HU-01 7 128503037 128503037 G A ATP6V1F Missense_Mutation p.E27K 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-BB-A5HU-01 7 140255433 140255433 C T DENND2A Intron 0.26 TCGA-BB-A5HU-01 7 143807504 143807504 C T OR2A2 Missense_Mutation p.H277Y 0.09 tolerated(1) benign(0.011) TCGA-BB-A5HU-01 7 150817139 150817139 C T AGAP3 Silent p.I345I 0.17 TCGA-BB-A5HU-01 7 151716859 151716859 G T GALNTL5 Missense_Mutation p.E435D 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-BB-A5HU-01 7 33407426 33407426 C T BBS9 Missense_Mutation p.H581Y 0.07 deleterious(0.01) benign(0.003) TCGA-BB-A5HU-01 7 48311578 48311578 C G ABCA13 Missense_Mutation p.S772C 0.10 benign(0.232) TCGA-BB-A5HU-01 7 5800679 5800679 C T RNF216 Missense_Mutation p.E8K 0.13 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-BB-A5HU-01 7 81978949 81978949 C G CACNA2D1 Missense_Mutation p.D38H 0.14 tolerated(0.07) probably_damaging(0.922) TCGA-BB-A5HU-01 7 82595703 82595703 G T PCLO Missense_Mutation p.A1134E 0.14 unknown(0) TCGA-BB-A5HU-01 8 101051168 101051168 C A RGS22 Missense_Mutation p.K719N 0.07 tolerated(0.09) probably_damaging(0.998) TCGA-BB-A5HU-01 8 113694784 113694784 G T CSMD3 Nonsense_Mutation p.S855* 0.13 TCGA-BB-A5HU-01 8 116631647 116631647 T G TRPS1 Silent p.A226A 0.10 TCGA-BB-A5HU-01 8 121530188 121530188 G C MTBP Missense_Mutation p.E782Q 0.06 tolerated(0.26) benign(0.001) TCGA-BB-A5HU-01 8 131922087 131922087 C G ADCY8 Missense_Mutation p.D503H 0.15 deleterious(0) probably_damaging(0.998) TCGA-BB-A5HU-01 8 139207509 139207509 C T FAM135B Missense_Mutation p.E289K 0.09 deleterious(0.01) benign(0.257) TCGA-BB-A5HU-01 8 145027955 145027955 G C PLEC 5'Flank 0.10 TCGA-BB-A5HU-01 8 145268107 145268107 C G MROH1 Intron 0.12 TCGA-BB-A5HU-01 8 27291621 27291621 C T PTK2B Missense_Mutation p.R373W 0.13 deleterious(0) probably_damaging(0.987) TCGA-BB-A5HU-01 8 48855894 48855894 G C PRKDC Missense_Mutation p.Q281E 0.10 probably_damaging(0.958) TCGA-BB-A5HU-01 8 72129059 72129059 G C EYA1 Missense_Mutation p.P410A 0.04 tolerated(0.14) benign(0.147) TCGA-BB-A5HU-01 8 77764690 77764690 G C ZFHX4 Missense_Mutation p.D1845H 0.56 probably_damaging(0.934) TCGA-BB-A5HU-01 8 77764944 77764944 G A ZFHX4 Silent p.Q1929Q 0.42 TCGA-BB-A5HU-01 8 87520869 87520869 G A RMDN1 5'UTR 0.16 TCGA-BB-A5HU-01 8 89339455 89339455 G C MMP16 5'UTR 0.39 TCGA-BB-A5HU-01 9 131469624 131469624 G C PKN3 Missense_Mutation p.A259P 0.36 tolerated(0.24) benign(0.037) TCGA-BB-A5HU-01 9 140201526 140201526 C A EXD3 Missense_Mutation p.G836V 0.42 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HU-01 9 94794750 94794750 G C SPTLC1 Silent p.L473L 0.13 TCGA-BB-A5HU-01 X 129200685 129200685 G C ELF4 3'UTR 0.18 TCGA-BB-A5HU-01 X 134292163 134292163 T C CT55 Silent p.A166A 0.32 TCGA-BB-A5HU-01 X 149014140 149014140 C A MAGEA8 3'UTR 0.56 TCGA-BB-A5HY-01 10 108521404 108521404 C T SORCS1 Missense_Mutation p.E301K 0.36 deleterious(0) possibly_damaging(0.693) TCGA-BB-A5HY-01 10 118897609 118897609 A G VAX1 5'Flank 0.60 TCGA-BB-A5HY-01 10 119036786 119036786 C T SLC18A2 3'UTR 0.15 TCGA-BB-A5HY-01 10 126631453 126631453 G T ZRANB1 Missense_Mutation p.A131S 0.30 tolerated(0.98) benign(0.001) TCGA-BB-A5HY-01 10 129907334 129907334 C T MKI67 Missense_Mutation p.E924K 0.22 deleterious(0.02) possibly_damaging(0.76) TCGA-BB-A5HY-01 10 37430711 37430711 G A ANKRD30A Missense_Mutation p.E240K 0.38 tolerated(0.17) benign(0.022) TCGA-BB-A5HY-01 10 38121537 38121537 C G ZNF248 Missense_Mutation p.R249T 0.23 tolerated(0.17) probably_damaging(0.994) TCGA-BB-A5HY-01 10 43600624 43600624 G C RET Missense_Mutation p.E284Q 0.27 tolerated(0.07) benign(0.074) TCGA-BB-A5HY-01 10 55719586 55719586 C G PCDH15 Missense_Mutation p.D1010H 0.25 deleterious(0) probably_damaging(1) TCGA-BB-A5HY-01 10 61834668 61834668 C G ANK3 Missense_Mutation p.E1991Q 0.19 probably_damaging(0.968) TCGA-BB-A5HY-01 10 86018531 86018531 G T RGR 3'UTR 0.33 TCGA-BB-A5HY-01 10 95089563 95089563 G C MYOF Missense_Mutation p.Q1614E 0.45 deleterious(0.02) probably_damaging(0.916) TCGA-BB-A5HY-01 10 97916275 97916275 G A ZNF518A RNA 0.23 TCGA-BB-A5HY-01 10 99196175 99196175 C A EXOSC1 3'UTR 0.20 TCGA-BB-A5HY-01 11 104896940 104896940 C T CASP1 3'UTR 0.24 TCGA-BB-A5HY-01 11 106558174 106558174 C T GUCY1A2 3'UTR 0.26 TCGA-BB-A5HY-01 11 118415635 118415635 C G IFT46 Missense_Mutation p.S355T 0.21 tolerated_low_confidence(0.14) benign(0.068) TCGA-BB-A5HY-01 11 126110935 126110935 C G FAM118B Missense_Mutation p.S112C 0.22 deleterious(0) possibly_damaging(0.779) TCGA-BB-A5HY-01 11 407459 407459 G T SIGIRR Silent p.L197L 0.36 TCGA-BB-A5HY-01 11 5664969 5664969 T C TRIM34 3'UTR 0.23 TCGA-BB-A5HY-01 11 58480315 58480315 G C GLYAT Missense_Mutation p.I78M 0.25 deleterious(0) probably_damaging(0.964) TCGA-BB-A5HY-01 11 5878738 5878738 C A OR52E8 Missense_Mutation p.M65I 0.63 deleterious(0.01) benign(0.052) TCGA-BB-A5HY-01 11 63326054 63326054 G A HRASLS2 Missense_Mutation p.S66F 0.49 tolerated(0.7) benign(0.081) TCGA-BB-A5HY-01 11 64533080 64533080 G A SF1 Intron 0.47 TCGA-BB-A5HY-01 11 66006744 66006744 G A PACS1 Missense_Mutation p.V809M 0.35 tolerated(0.27) benign(0.044) TCGA-BB-A5HY-01 11 66359859 66359863 GGATA - CCDC87 Frame_Shift_Del p.I209Lfs*14 0.20 TCGA-BB-A5HY-01 11 67263728 67263728 C T PITPNM1 Silent p.P746P 0.28 TCGA-BB-A5HY-01 11 67352222 67352222 C G GSTP1 Missense_Mutation p.R71G 0.15 deleterious(0.03) probably_damaging(0.949) TCGA-BB-A5HY-01 11 68822238 68822238 G A TPCN2 Missense_Mutation p.R75Q 0.26 tolerated(0.06) probably_damaging(0.984) TCGA-BB-A5HY-01 12 100491278 100491278 C G UHRF1BP1L Missense_Mutation p.L178F 0.43 deleterious(0) probably_damaging(1) TCGA-BB-A5HY-01 12 110350876 110350877 - G TCHP Frame_Shift_Ins 0.43 TCGA-BB-A5HY-01 12 113328749 113328749 A T RPH3A Silent p.I572I 0.08 TCGA-BB-A5HY-01 12 113737638 113737638 A C SLC8B1 Missense_Mutation p.F567V 0.65 deleterious(0) probably_damaging(0.995) TCGA-BB-A5HY-01 12 122618456 122618456 A C MLXIP Missense_Mutation p.K552Q 0.67 tolerated(0.05) possibly_damaging(0.493) TCGA-BB-A5HY-01 12 129558346 129558346 G T TMEM132D 3'UTR 0.77 TCGA-BB-A5HY-01 12 132624979 132624979 C T DDX51 Silent p.G554G 0.61 TCGA-BB-A5HY-01 12 48526676 48526676 G - PFKM Frame_Shift_Del p.C160Afs*18 0.13 TCGA-BB-A5HY-01 12 50385913 50385913 C T RACGAP1 Missense_Mutation p.V528I 0.40 tolerated(0.28) benign(0.002) TCGA-BB-A5HY-01 12 52695650 52695650 C G KRT86 5'UTR 0.15 TCGA-BB-A5HY-01 12 53421933 53421933 G C EIF4B Missense_Mutation p.D314H 0.21 deleterious(0.01) possibly_damaging(0.861) TCGA-BB-A5HY-01 12 57539234 57539234 G A LRP1 Missense_Mutation p.V268M 0.25 possibly_damaging(0.563) TCGA-BB-A5HY-01 12 57943981 57943981 G A KIF5A 5'UTR 0.20 TCGA-BB-A5HY-01 12 58121794 58121794 G A AGAP2 Missense_Mutation p.R898W 0.55 deleterious(0.01) possibly_damaging(0.707) TCGA-BB-A5HY-01 12 66620516 66620516 A T IRAK3 Missense_Mutation p.N223Y 0.62 deleterious(0) probably_damaging(0.945) TCGA-BB-A5HY-01 12 73050773 73050773 A T TRHDE Missense_Mutation p.E972D 0.72 deleterious(0.05) probably_damaging(0.984) TCGA-BB-A5HY-01 12 77240409 77240409 T A ZDHHC17 Missense_Mutation p.L486Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-BB-A5HY-01 12 80014868 80014868 G C PAWR Silent p.S212S 0.29 TCGA-BB-A5HY-01 13 114549558 114549558 G A GAS6 Silent p.C95C 0.69 TCGA-BB-A5HY-01 13 24890210 24890210 C T C1QTNF9 Silent p.C23C 0.41 TCGA-BB-A5HY-01 13 26789049 26789049 G C RNF6 Missense_Mutation p.H324D 0.24 tolerated(0.23) benign(0.261) TCGA-BB-A5HY-01 13 26967560 26967560 C A CDK8 Missense_Mutation p.H235N 0.54 deleterious(0.02) benign(0.166) TCGA-BB-A5HY-01 13 96684209 96684209 C T UGGT2 Missense_Mutation p.E59K 0.52 deleterious(0) possibly_damaging(0.772) TCGA-BB-A5HY-01 14 21796588 21796588 G C RPGRIP1 Missense_Mutation p.Q967H 0.44 tolerated(0.14) benign(0.035) TCGA-BB-A5HY-01 14 35487966 35487966 A C SRP54 Missense_Mutation p.I348L 0.11 tolerated(0.35) benign(0.016) TCGA-BB-A5HY-01 14 88477146 88477146 T A GPR65 5'UTR 0.64 TCGA-BB-A5HY-01 14 88967212 88967212 T G PTPN21 Missense_Mutation p.S227R 0.15 deleterious(0.02) probably_damaging(0.932) TCGA-BB-A5HY-01 15 24922513 24922513 C G NPAP1 Missense_Mutation p.P500R 0.27 deleterious(0.01) possibly_damaging(0.907) TCGA-BB-A5HY-01 15 42840658 42840658 C T LRRC57 5'UTR 0.16 TCGA-BB-A5HY-01 15 43705329 43705329 C T TP53BP1 Missense_Mutation p.E1765K 0.15 deleterious(0) probably_damaging(0.966) TCGA-BB-A5HY-01 15 52849391 52849391 T A ARPP19 Missense_Mutation p.E25V 0.16 deleterious(0.03) possibly_damaging(0.654) TCGA-BB-A5HY-01 15 68479984 68479984 T G PIAS1 Missense_Mutation p.F589L 0.58 tolerated_low_confidence(0.09) benign(0.001) TCGA-BB-A5HY-01 15 69682093 69682093 C T PAQR5 Silent p.L162L 0.22 TCGA-BB-A5HY-01 15 80872870 80872870 C G ARNT2 Missense_Mutation p.R578G 0.25 deleterious(0.02) possibly_damaging(0.726) TCGA-BB-A5HY-01 15 90039687 90039687 A G RHCG Missense_Mutation p.V30A 0.22 deleterious(0.02) possibly_damaging(0.868) TCGA-BB-A5HY-01 15 90176070 90176070 T A KIF7 Missense_Mutation p.K959M 0.26 deleterious(0) possibly_damaging(0.839) TCGA-BB-A5HY-01 15 93173554 93173554 C A FAM174B Missense_Mutation p.K122N 0.52 deleterious(0) probably_damaging(0.998) TCGA-BB-A5HY-01 16 24358114 24358114 C G CACNG3 Missense_Mutation p.Q91E 0.15 tolerated(0.38) possibly_damaging(0.566) TCGA-BB-A5HY-01 16 30974808 30974808 A G SETD1A Missense_Mutation p.Q191R 0.62 probably_damaging(0.943) TCGA-BB-A5HY-01 16 4777097 4777097 G A ANKS3 Silent p.I84I 0.33 TCGA-BB-A5HY-01 16 58587688 58587688 C G CNOT1 Missense_Mutation p.E990Q 0.19 tolerated(0.11) probably_damaging(0.942) TCGA-BB-A5HY-01 16 68857424 68857424 G C CDH1 Missense_Mutation p.D687H 0.14 deleterious(0.05) possibly_damaging(0.726) TCGA-BB-A5HY-01 17 10297619 10297619 C T MYH8 Missense_Mutation p.A1705T 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-BB-A5HY-01 17 18088053 18088053 G A ALKBH5 Missense_Mutation p.E166K 0.24 tolerated(0.66) benign(0.029) TCGA-BB-A5HY-01 17 18156627 18156627 T C FLII Missense_Mutation p.E334G 0.25 deleterious(0) probably_damaging(0.979) TCGA-BB-A5HY-01 17 27003266 27003266 G C SUPT6H Missense_Mutation p.E239Q 0.20 tolerated(0.11) benign(0.059) TCGA-BB-A5HY-01 17 29111242 29111242 G A CRLF3 Missense_Mutation p.S431L 0.38 deleterious(0.04) possibly_damaging(0.492) TCGA-BB-A5HY-01 17 29192759 29192760 - CAAC ATAD5 Frame_Shift_Ins p.Q1061Tfs*6 0.33 TCGA-BB-A5HY-01 17 35299544 35299544 G A LHX1 Silent p.L241L 0.41 TCGA-BB-A5HY-01 17 38078733 38078733 C A ORMDL3 3'UTR 0.25 TCGA-BB-A5HY-01 17 38078734 38078734 A G ORMDL3 3'UTR 0.26 TCGA-BB-A5HY-01 17 3850779 3850779 C T ATP2A3 Missense_Mutation p.R334Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-BB-A5HY-01 17 46137112 46137112 A T NFE2L1 3'UTR 0.27 TCGA-BB-A5HY-01 17 4892181 4892181 C T INCA1 Missense_Mutation p.E152K 0.48 tolerated(0.14) benign(0.007) TCGA-BB-A5HY-01 17 61972625 61972625 G C CSH1 Intron 0.29 TCGA-BB-A5HY-01 17 62499306 62499306 T C DDX5 Silent p.R270R 0.51 TCGA-BB-A5HY-01 17 64881325 64881325 G A CACNG5 Missense_Mutation p.D266N 0.24 deleterious_low_confidence(0) benign(0.073) TCGA-BB-A5HY-01 17 68171263 68171263 A G KCNJ2 Missense_Mutation p.N28S 0.23 tolerated(0.13) benign(0.216) TCGA-BB-A5HY-01 17 7578376 7578379 CTAT - TP53 Frame_Shift_Del p.D184Afs*62 0.68 TCGA-BB-A5HY-01 18 21438783 21438783 G A LAMA3 Missense_Mutation p.R1471Q 0.58 benign(0.024) TCGA-BB-A5HY-01 18 65180985 65180985 G A DSEL Silent p.V297V 0.35 TCGA-BB-A5HY-01 19 11323910 11323910 C T DOCK6 Missense_Mutation p.R1478H 0.28 deleterious(0) possibly_damaging(0.881) TCGA-BB-A5HY-01 19 11942632 11942633 TA - ZNF440 Frame_Shift_Del p.Y215Sfs*4 0.36 TCGA-BB-A5HY-01 19 12186814 12186814 C T ZNF844 Silent p.F293F 0.35 TCGA-BB-A5HY-01 19 12981863 12981863 T A MAST1 Missense_Mutation p.V1047E 0.28 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HY-01 19 14705352 14705352 C A CLEC17A Missense_Mutation p.P101T 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-BB-A5HY-01 19 1496452 1496452 G C REEP6 Missense_Mutation p.V173L 0.39 tolerated(0.07) benign(0.049) TCGA-BB-A5HY-01 19 15350601 15350601 T C BRD4 Missense_Mutation p.Q1105R 0.28 benign(0.069) TCGA-BB-A5HY-01 19 1556195 1556195 G A MEX3D Silent p.A441A 0.27 TCGA-BB-A5HY-01 19 17838760 17838760 C G MAP1S Missense_Mutation p.T856R 0.25 tolerated(0.52) benign(0.003) TCGA-BB-A5HY-01 19 18648530 18648530 G C FKBP8 Missense_Mutation p.L276V 0.36 deleterious(0.04) benign(0.133) TCGA-BB-A5HY-01 19 18731421 18731421 G - TMEM59L 3'UTR 0.27 TCGA-BB-A5HY-01 19 2117225 2117225 C T AP3D1 Missense_Mutation p.E619K 0.25 deleterious(0.01) possibly_damaging(0.476) TCGA-BB-A5HY-01 19 30164743 30164743 G A PLEKHF1 5'UTR 0.31 TCGA-BB-A5HY-01 19 45571317 45571317 G A CLASRP Intron 0.62 TCGA-BB-A5HY-01 19 46332459 46332459 C T SYMPK Missense_Mutation p.R585H 0.07 deleterious(0) possibly_damaging(0.73) TCGA-BB-A5HY-01 19 53669336 53669336 T C ZNF665 Missense_Mutation p.H136R 0.64 tolerated(0.3) benign(0) TCGA-BB-A5HY-01 19 55556334 55556334 G A RDH13 3'UTR 0.50 TCGA-BB-A5HY-01 19 56320181 56320181 G C NLRP11 Missense_Mutation p.Q599E 0.29 tolerated(0.21) benign(0.002) TCGA-BB-A5HY-01 19 57705295 57705295 G A ZNF264 Missense_Mutation p.G29E 0.31 tolerated(0.07) benign(0.248) TCGA-BB-A5HY-01 19 57905567 57905567 G A ZNF548 Silent p.A9A 0.29 TCGA-BB-A5HY-01 19 58762729 58762729 C T ZNF544 Intron 0.21 TCGA-BB-A5HY-01 1 109472665 109472665 T C GPSM2 3'UTR 0.64 TCGA-BB-A5HY-01 1 12918969 12918969 C G PRAMEF2 Silent p.L35L 0.59 TCGA-BB-A5HY-01 1 16256092 16256092 A T SPEN Missense_Mutation p.L1119F 0.41 benign(0.355) TCGA-BB-A5HY-01 1 171083484 171083484 G A FMO3 Missense_Mutation p.A389T 0.16 deleterious(0.05) benign(0.262) TCGA-BB-A5HY-01 1 176526263 176526263 C T PAPPA2 Missense_Mutation p.R269W 0.47 deleterious(0.02) probably_damaging(0.967) TCGA-BB-A5HY-01 1 181021581 181021581 G C MR1 Missense_Mutation p.S272T 0.17 tolerated(0.11) benign(0.107) TCGA-BB-A5HY-01 1 197111671 197111671 C G ASPM Missense_Mutation p.V571L 0.44 tolerated(0.49) benign(0.004) TCGA-BB-A5HY-01 1 200613413 200613413 C A DDX59 Missense_Mutation p.R610I 0.24 deleterious_low_confidence(0) benign(0.439) TCGA-BB-A5HY-01 1 222717278 222717278 C A HHIPL2 Missense_Mutation p.R192L 0.22 tolerated(0.28) benign(0.394) TCGA-BB-A5HY-01 1 223567417 223567417 C T C1orf65 Silent p.F200F 0.46 TCGA-BB-A5HY-01 1 237837428 237837428 G C RYR2 Missense_Mutation p.D2875H 0.18 probably_damaging(1) TCGA-BB-A5HY-01 1 247875250 247875250 G T OR6F1 Missense_Mutation p.L270M 0.41 tolerated(0.27) possibly_damaging(0.629) TCGA-BB-A5HY-01 1 26528988 26528989 CT - CATSPER4 Frame_Shift_Del p.S459* 0.24 TCGA-BB-A5HY-01 1 27878171 27878171 C T AHDC1 Silent p.L152L 0.29 TCGA-BB-A5HY-01 1 33282911 33282911 C T YARS 5'UTR 0.17 TCGA-BB-A5HY-01 1 52897049 52897049 A C ZCCHC11 Silent p.S1449S 0.52 TCGA-BB-A5HY-01 1 69561 69561 G A OR4F5 Silent p.V157V 0.76 TCGA-BB-A5HY-01 20 14306375 14306375 G C FLRT3 Missense_Mutation p.S593C 0.12 tolerated(0.07) possibly_damaging(0.894) TCGA-BB-A5HY-01 20 20341133 20341133 C G C20orf26 3'UTR 0.34 TCGA-BB-A5HY-01 20 21324757 21324757 C A XRN2 Missense_Mutation p.F480L 0.40 tolerated(0.44) benign(0) TCGA-BB-A5HY-01 20 23966576 23966576 T C GGTLC1 Missense_Mutation p.M114V 0.13 tolerated(1) benign(0.001) TCGA-BB-A5HY-01 20 31375191 31375191 G T DNMT3B Missense_Mutation p.Q196H 0.43 tolerated(0.13) benign(0.002) TCGA-BB-A5HY-01 20 34292657 34292657 A G RBM39 Silent p.Y475Y 0.12 TCGA-BB-A5HY-01 20 46252677 46252677 C T NCOA3 Missense_Mutation p.R36W 0.26 tolerated(0.19) benign(0.001) TCGA-BB-A5HY-01 20 50133394 50133394 G A NFATC2 Missense_Mutation p.R421W 0.06 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HY-01 20 60989012 60989012 G C RBBP8NL Silent p.L465L 0.38 TCGA-BB-A5HY-01 20 62203587 62203587 G C HELZ2 Missense_Mutation p.S51C 0.16 deleterious(0) probably_damaging(0.959) TCGA-BB-A5HY-01 20 742281 742281 T C SLC52A3 Intron 0.19 TCGA-BB-A5HY-01 21 10998327 10998327 G C TPTE RNA 0.33 TCGA-BB-A5HY-01 21 18971140 18971140 T A BTG3 Missense_Mutation p.Y149F 0.28 deleterious(0.05) probably_damaging(0.98) TCGA-BB-A5HY-01 21 22656566 22656566 A T NCAM2 Silent p.I61I 0.22 TCGA-BB-A5HY-01 21 31743919 31743919 G T KRTAP13-2 3'UTR 0.35 TCGA-BB-A5HY-01 21 32253521 32253521 G C KRTAP11-1 Missense_Mutation p.S108C 0.30 deleterious(0) probably_damaging(0.961) TCGA-BB-A5HY-01 22 43026970 43026970 C T CYB5R3 Missense_Mutation p.R117Q 0.16 tolerated(0.12) benign(0.015) TCGA-BB-A5HY-01 2 105472255 105472255 A C POU3F3 Missense_Mutation p.Q96P 0.36 deleterious_low_confidence(0) benign(0) TCGA-BB-A5HY-01 2 1241661 1241661 T A SNTG2 Missense_Mutation p.W241R 0.36 tolerated(0.95) benign(0) TCGA-BB-A5HY-01 2 141625742 141625742 G A LRP1B Silent p.D1420D 0.35 TCGA-BB-A5HY-01 2 168103464 168103464 G A XIRP2 Silent p.Q1854Q 0.69 TCGA-BB-A5HY-01 2 179395596 179395596 G A TTN Missense_Mutation p.S35249F 0.81 TCGA-BB-A5HY-01 2 179417911 179417911 C A TTN Missense_Mutation p.D29906Y 0.20 TCGA-BB-A5HY-01 2 179529425 179529425 G A TTN Missense_Mutation p.T12053M 0.84 TCGA-BB-A5HY-01 2 182374418 182374418 A G ITGA4 Missense_Mutation p.I577V 0.17 tolerated(0.47) benign(0.01) TCGA-BB-A5HY-01 2 189876410 189876410 G A COL3A1 Silent p.V1437V 0.54 TCGA-BB-A5HY-01 2 20494150 20494150 G C PUM2 Missense_Mutation p.P380R 0.22 tolerated_low_confidence(0.39) benign(0.06) TCGA-BB-A5HY-01 2 212248564 212248564 T C ERBB4 Missense_Mutation p.K1235E 0.58 tolerated(0.84) benign(0.09) TCGA-BB-A5HY-01 2 217001937 217001937 C T XRCC5 Missense_Mutation p.H414Y 0.14 deleterious(0.01) benign(0.005) TCGA-BB-A5HY-01 2 225670843 225670843 C A DOCK10 Missense_Mutation p.A1272S 0.33 tolerated(0.32) benign(0.317) TCGA-BB-A5HY-01 2 228124545 228124545 G A COL4A3 Missense_Mutation p.E356K 0.28 benign(0.349) TCGA-BB-A5HY-01 2 231380302 231380302 G A SP100 Intron 0.58 TCGA-BB-A5HY-01 2 238275630 238275630 C G COL6A3 Missense_Mutation p.E1734Q 0.41 possibly_damaging(0.804) TCGA-BB-A5HY-01 2 242035360 242035360 G A MTERFD2 3'UTR 0.57 TCGA-BB-A5HY-01 2 242758105 242758105 C G NEU4 Missense_Mutation p.L409V 0.47 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HY-01 2 70188880 70188880 G A ASPRV1 5'UTR 0.15 TCGA-BB-A5HY-01 3 113146035 113146035 T G WDR52 Silent p.T84T 0.18 TCGA-BB-A5HY-01 3 113677458 113677458 C A ZDHHC23 Intron 0.19 TCGA-BB-A5HY-01 3 113955233 113955233 T G ZNF80 Missense_Mutation p.Y230S 0.14 tolerated(1) benign(0.003) TCGA-BB-A5HY-01 3 121414722 121414724 GAA - GOLGB1 In_Frame_Del p.L1549del 0.20 TCGA-BB-A5HY-01 3 130463461 130463461 C T PIK3R4 Missense_Mutation p.R201H 0.23 deleterious(0) probably_damaging(0.974) TCGA-BB-A5HY-01 3 132435637 132435637 T C NPHP3 Missense_Mutation p.I263V 0.39 tolerated(0.13) benign(0.001) TCGA-BB-A5HY-01 3 138739168 138739168 T C PRR23B Silent p.S112S 0.11 TCGA-BB-A5HY-01 3 154878231 154878231 C G MME Missense_Mutation p.Q552E 0.18 tolerated(0.09) benign(0.267) TCGA-BB-A5HY-01 3 157815867 157815867 G A SHOX2 Silent p.I339I 0.26 TCGA-BB-A5HY-01 3 157841762 157841762 C G RSRC1 Nonsense_Mutation p.S101* 0.29 TCGA-BB-A5HY-01 3 167747016 167747016 T C GOLIM4 Missense_Mutation p.E503G 0.08 tolerated(0.07) benign(0.046) TCGA-BB-A5HY-01 3 170201150 170201150 C T SLC7A14 Silent p.P356P 0.05 TCGA-BB-A5HY-01 3 195955139 195955139 C T SLC51A Silent p.L172L 0.11 TCGA-BB-A5HY-01 3 197707201 197707201 G T LMLN Missense_Mutation p.C185F 0.19 deleterious(0) possibly_damaging(0.844) TCGA-BB-A5HY-01 3 32933123 32933123 T C TRIM71 Silent p.I809I 0.63 TCGA-BB-A5HY-01 3 49723767 49723767 G C MST1 Missense_Mutation p.T332R 0.23 tolerated(0.35) benign(0.007) TCGA-BB-A5HY-01 3 49842758 49842758 G A UBA7 Silent p.L1008L 0.44 TCGA-BB-A5HY-01 3 53899156 53899156 G A IL17RB Missense_Mutation p.V444M 0.59 tolerated(1) benign(0.023) TCGA-BB-A5HY-01 3 62459953 62459953 T C CADPS Silent p.R1124R 0.06 TCGA-BB-A5HY-01 3 73437118 73437118 C A PDZRN3 Splice_Site p.X506_splice 0.54 TCGA-BB-A5HY-01 3 78763559 78763559 G - ROBO1 Frame_Shift_Del p.L345* 0.38 TCGA-BB-A5HY-01 4 110610529 110610529 G C CASP6 Nonsense_Mutation p.S280* 0.25 TCGA-BB-A5HY-01 4 126336557 126336557 A G FAT4 Missense_Mutation p.I2147V 0.60 benign(0.006) TCGA-BB-A5HY-01 4 128861105 128861105 C A MFSD8 Missense_Mutation p.D201Y 0.70 deleterious(0.05) benign(0.119) TCGA-BB-A5HY-01 4 130032955 130032955 G A C4orf33 3'UTR 0.53 TCGA-BB-A5HY-01 4 20597338 20597338 G T SLIT2 Silent p.G1067G 0.58 TCGA-BB-A5HY-01 4 57861015 57861015 A G POLR2B Missense_Mutation p.I187V 0.60 tolerated(0.19) probably_damaging(0.998) TCGA-BB-A5HY-01 4 69962717 69962717 T A UGT2B7 Missense_Mutation p.L160Q 0.21 deleterious(0) probably_damaging(0.972) TCGA-BB-A5HY-01 4 75938035 75938035 C T PARM1 Silent p.L148L 0.31 TCGA-BB-A5HY-01 4 85758209 85758209 G T WDFY3 Missense_Mutation p.P150H 0.42 deleterious(0) probably_damaging(0.997) TCGA-BB-A5HY-01 5 140515316 140515316 A G PCDHB5 Silent p.E100E 0.25 TCGA-BB-A5HY-01 5 14420038 14420038 C G TRIO Missense_Mutation p.S1704C 0.56 benign(0.235) TCGA-BB-A5HY-01 5 150056388 150056388 G A MYOZ3 Missense_Mutation p.R236K 0.17 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HY-01 5 150925037 150925037 G T FAT2 Missense_Mutation p.P1884H 0.31 benign(0.327) TCGA-BB-A5HY-01 5 153432536 153432536 G T MFAP3 Missense_Mutation p.D118Y 0.13 deleterious(0) probably_damaging(1) TCGA-BB-A5HY-01 5 154395793 154395793 C G KIF4B Missense_Mutation p.P792A 0.14 tolerated(0.23) benign(0.134) TCGA-BB-A5HY-01 5 156456717 156456717 T G HAVCR1 3'UTR 0.26 TCGA-BB-A5HY-01 5 156590594 156590594 A T FAM71B Missense_Mutation p.S228T 0.31 deleterious(0.01) probably_damaging(0.931) TCGA-BB-A5HY-01 5 37180155 37180155 C G C5orf42 Missense_Mutation p.E1901Q 0.23 tolerated(1) benign(0.001) TCGA-BB-A5HY-01 5 43040044 43040044 C A ANXA2R Silent p.P35P 0.47 TCGA-BB-A5HY-01 5 60063693 60063693 C T ELOVL7 Missense_Mutation p.R98Q 0.56 tolerated(0.06) benign(0.008) TCGA-BB-A5HY-01 5 7698431 7698431 C G ADCY2 Silent p.L351L 0.55 TCGA-BB-A5HY-01 5 94956164 94956164 C T GPR150 Missense_Mutation p.T62I 0.74 tolerated(0.53) benign(0.446) TCGA-BB-A5HY-01 6 10818168 10818168 A G MAK Silent p.L65L 0.47 TCGA-BB-A5HY-01 6 117647402 117647402 T G ROS1 Missense_Mutation p.I1848L 0.80 deleterious(0.02) benign(0.062) TCGA-BB-A5HY-01 6 119509707 119509707 C T MAN1A1 Missense_Mutation p.G528S 0.67 tolerated(0.64) possibly_damaging(0.805) TCGA-BB-A5HY-01 6 132791109 132791109 G C STX7 Missense_Mutation p.S173C 0.08 tolerated(0.08) probably_damaging(0.974) TCGA-BB-A5HY-01 6 133045827 133045827 A T VNN3 3'UTR 0.79 TCGA-BB-A5HY-01 6 136599800 136599800 G T BCLAF1 Nonsense_Mutation p.Y73* 0.12 TCGA-BB-A5HY-01 6 151785665 151785665 C G C6orf211 Missense_Mutation p.A157G 0.25 deleterious(0.04) benign(0.41) TCGA-BB-A5HY-01 6 151785676 151785676 C T C6orf211 Missense_Mutation p.H161Y 0.23 tolerated(1) benign(0.001) TCGA-BB-A5HY-01 6 152332804 152332804 G T ESR1 Missense_Mutation p.L370F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BB-A5HY-01 6 158450035 158450035 T G SYNJ2 Silent p.S154S 0.20 TCGA-BB-A5HY-01 6 30166570 30166570 C T TRIM26 Missense_Mutation p.R104Q 0.11 tolerated(0.19) benign(0.362) TCGA-BB-A5HY-01 6 30550868 30550868 C T ABCF1 Missense_Mutation p.S273L 0.34 tolerated(0.1) benign(0.017) TCGA-BB-A5HY-01 6 31692648 31692648 T G C6orf25 Intron 0.20 TCGA-BB-A5HY-01 6 3290057 3290058 - A SLC22A23 Frame_Shift_Ins p.V419Rfs*50 0.44 TCGA-BB-A5HY-01 6 33135307 33135307 C A COL11A2 Missense_Mutation p.D1254Y 0.32 unknown(0) TCGA-BB-A5HY-01 6 33247107 33247107 C T WDR46 Silent p.A593A 0.42 TCGA-BB-A5HY-01 6 34392616 34392616 G A RPS10 Missense_Mutation p.S51F 0.46 deleterious(0.02) benign(0.213) TCGA-BB-A5HY-01 6 36269754 36269754 C G PNPLA1 Missense_Mutation p.R298G 0.24 deleterious(0.02) benign(0.033) TCGA-BB-A5HY-01 6 37247260 37247260 C T TBC1D22B Silent p.A98A 0.33 TCGA-BB-A5HY-01 6 46293251 46293251 A T RCAN2 Intron 0.36 TCGA-BB-A5HY-01 6 49754424 49754424 G T PGK2 Missense_Mutation p.D159E 0.35 tolerated(0.07) probably_damaging(0.918) TCGA-BB-A5HY-01 6 54254795 54254795 C G TINAG 3'UTR 0.19 TCGA-BB-A5HY-01 6 56494070 56494070 C T DST Missense_Mutation p.V948I 0.18 benign(0.009) TCGA-BB-A5HY-01 7 100421372 100421372 C A EPHB4 Missense_Mutation p.R102L 0.41 tolerated(0.13) benign(0.216) TCGA-BB-A5HY-01 7 102968144 102968144 A G DNAJC2 Missense_Mutation p.I130T 0.42 tolerated(0.07) benign(0.266) TCGA-BB-A5HY-01 7 107823215 107823215 C T NRCAM Silent p.L818L 0.38 TCGA-BB-A5HY-01 7 142564266 142564266 T C EPHB6 Missense_Mutation p.V497A 0.26 tolerated(0.73) probably_damaging(0.959) TCGA-BB-A5HY-01 7 151254224 151254224 G T PRKAG2 3'UTR 0.44 TCGA-BB-A5HY-01 7 151835944 151835944 C T KMT2C Silent p.V4860V 0.24 TCGA-BB-A5HY-01 7 154863002 154863002 C T HTR5A-AS1 Silent p.T4T 0.06 TCGA-BB-A5HY-01 7 158726893 158726893 A G WDR60 Missense_Mutation p.N874D 0.23 tolerated(0.05) benign(0.007) TCGA-BB-A5HY-01 7 42004440 42004440 C T GLI3 Missense_Mutation p.D1411N 0.23 tolerated_low_confidence(0.11) benign(0.309) TCGA-BB-A5HY-01 7 45614712 45614712 G A ADCY1 Silent p.V190V 0.74 TCGA-BB-A5HY-01 7 55225403 55225403 G C EGFR Missense_Mutation p.A419P 0.04 tolerated(0.18) possibly_damaging(0.864) TCGA-BB-A5HY-01 7 590064 590064 T C PRKAR1B 3'UTR 0.31 TCGA-BB-A5HY-01 7 66460457 66460457 C G SBDS 5'UTR 0.11 TCGA-BB-A5HY-01 7 70853310 70853310 C T WBSCR17 Missense_Mutation p.S171F 0.21 deleterious(0) probably_damaging(0.996) TCGA-BB-A5HY-01 7 73119286 73119286 C T STX1A Intron 0.54 TCGA-BB-A5HY-01 7 76058916 76058916 C T ZP3 Missense_Mutation p.R133C 0.14 deleterious(0.04) possibly_damaging(0.885) TCGA-BB-A5HY-01 7 77708282 77708282 C T MAGI2 Missense_Mutation p.G1230R 0.13 deleterious(0) probably_damaging(1) TCGA-BB-A5HY-01 7 91735020 91735020 C T AKAP9 Nonsense_Mutation p.R3787* 0.40 TCGA-BB-A5HY-01 7 94539776 94539776 G C PPP1R9A Missense_Mutation p.E117D 0.15 tolerated(0.16) probably_damaging(0.999) TCGA-BB-A5HY-01 7 98591296 98591296 T C TRRAP Missense_Mutation p.L3314P 0.14 probably_damaging(0.947) TCGA-BB-A5HY-01 7 99811753 99811753 T A STAG3 3'UTR 0.33 TCGA-BB-A5HY-01 8 104927760 104927760 G T RIMS2 Missense_Mutation p.C617F 0.27 tolerated_low_confidence(0.08) probably_damaging(1) TCGA-BB-A5HY-01 8 110466951 110466951 G C PKHD1L1 Splice_Site p.X2249_splice 0.43 TCGA-BB-A5HY-01 8 113484819 113484819 C G CSMD3 Splice_Site p.X1799_splice 0.07 TCGA-BB-A5HY-01 8 133925509 133925509 C T TG Silent p.C1459C 0.85 TCGA-BB-A5HY-01 8 25174611 25174611 G T DOCK5 Silent p.T469T 0.54 TCGA-BB-A5HY-01 8 28747393 28747393 G A INTS9 Silent p.L3L 0.57 TCGA-BB-A5HY-01 8 35541103 35541103 A G UNC5D Silent p.E203E 0.04 TCGA-BB-A5HY-01 8 94798550 94798550 G A TMEM67 Missense_Mutation p.R463Q 0.56 deleterious(0.01) probably_damaging(0.958) TCGA-BB-A5HY-01 9 103055252 103055252 A T INVS Nonsense_Mutation p.R905* 0.22 TCGA-BB-A5HY-01 9 131486279 131486279 C G ZDHHC12 Missense_Mutation p.D32H 0.35 deleterious(0.01) benign(0.443) TCGA-BB-A5HY-01 9 135927456 135927456 A G GTF3C5 Missense_Mutation p.I260V 0.48 tolerated(0.3) benign(0.002) TCGA-BB-A5HY-01 9 139848183 139848183 C G LCN12 Missense_Mutation p.L95V 0.14 deleterious(0) probably_damaging(0.971) TCGA-BB-A5HY-01 9 140140219 140140219 A G FAM166A Missense_Mutation p.V48A 0.08 deleterious(0) probably_damaging(0.999) TCGA-BB-A5HY-01 9 14863832 14863832 C G FREM1 Missense_Mutation p.D102H 0.33 deleterious(0) probably_damaging(1) TCGA-BB-A5HY-01 9 15486044 15486044 A G PSIP1 Missense_Mutation p.I139T 0.67 tolerated(0.7) benign(0.01) TCGA-BB-A5HY-01 9 19335103 19335103 G A DENND4C Silent p.K863K 0.36 TCGA-BB-A5HY-01 9 21854752 21854752 G A MTAP Silent p.A191A 0.62 TCGA-BB-A5HY-01 9 21974695 21974696 - TAAC CDKN2A Nonsense_Mutation p.Y44* 0.63 TCGA-BB-A5HY-01 9 91653097 91653097 C G SHC3 Missense_Mutation p.K489N 0.29 tolerated(0.08) benign(0.071) TCGA-BB-A5HY-01 X 102005359 102005359 G T BHLHB9 Missense_Mutation p.R479I 0.48 deleterious(0.04) probably_damaging(0.973) TCGA-BB-A5HY-01 X 148693015 148693015 C G TMEM185A Missense_Mutation p.G57A 0.50 deleterious(0) probably_damaging(0.994) TCGA-BB-A5HY-01 X 32305785 32305785 G T DMD Silent p.R2051R 0.32 TCGA-BB-A5HY-01 X 41007694 41007694 G A USP9X Missense_Mutation p.D498N 0.43 deleterious(0.02) probably_damaging(0.98) TCGA-BB-A5HY-01 X 41205842 41205842 C T DDX3X Missense_Mutation p.R528C 0.67 deleterious(0.02) probably_damaging(0.992) TCGA-BB-A5HY-01 X 47774931 47774931 C T ZNF81 Missense_Mutation p.H296Y 0.38 tolerated(0.19) benign(0.404) TCGA-BB-A5HY-01 X 53114239 53114239 G A TSPYL2 Nonsense_Mutation p.W367* 0.19 TCGA-BB-A5HY-01 X 65413405 65413405 C T HEPH Nonsense_Mutation p.R486* 0.16 TCGA-BB-A5HY-01 X 67430102 67430102 G A OPHN1 Missense_Mutation p.T242I 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-BB-A5HZ-01 10 106139933 106139933 G A CCDC147 Silent p.K440K 0.21 TCGA-BB-A5HZ-01 10 72509715 72509715 C G ADAMTS14 Missense_Mutation p.P804A 0.07 deleterious(0.02) probably_damaging(1) TCGA-BB-A5HZ-01 10 90122434 90122436 GAG - RNLS In_Frame_Del p.S192del 0.21 TCGA-BB-A5HZ-01 10 97916587 97916587 C T ZNF518A RNA 0.09 TCGA-BB-A5HZ-01 11 1075751 1075751 C T MUC2 Silent p.C59C 0.19 TCGA-BB-A5HZ-01 11 118780754 118780754 C G BCL9L 5'UTR 0.10 TCGA-BB-A5HZ-01 11 125616580 125616580 G T PATE1 Missense_Mutation p.R26I 0.06 tolerated(0.25) benign(0.053) TCGA-BB-A5HZ-01 11 19076976 19076976 G A MRGPRX2 Missense_Mutation p.S325L 0.23 deleterious(0.02) benign(0.189) TCGA-BB-A5HZ-01 11 36514153 36514153 C A TRAF6 Missense_Mutation p.C235F 0.19 deleterious(0) benign(0.424) TCGA-BB-A5HZ-01 11 3838716 3838716 T A PGAP2 Missense_Mutation p.I100N 0.30 deleterious(0.01) possibly_damaging(0.601) TCGA-BB-A5HZ-01 11 5602505 5602505 C A OR52B6 Silent p.V133V 0.23 TCGA-BB-A5HZ-01 11 64111483 64111483 G C CCDC88B Missense_Mutation p.E490D 0.19 tolerated(0.05) benign(0.037) TCGA-BB-A5HZ-01 11 66190203 66190203 C T NPAS4 Silent p.G163G 0.22 TCGA-BB-A5HZ-01 12 115118704 115118706 TGT - TBX3 In_Frame_Del p.N212del 0.25 TCGA-BB-A5HZ-01 12 132490668 132490668 T C EP400 Missense_Mutation p.C983R 0.27 unknown(0) TCGA-BB-A5HZ-01 12 15811037 15811037 G A EPS8 Silent p.H359H 0.21 TCGA-BB-A5HZ-01 12 26275624 26275624 G - BHLHE41 Frame_Shift_Del p.P275Rfs*6 0.25 TCGA-BB-A5HZ-01 12 32134611 32134611 C T KIAA1551 Missense_Mutation p.S241L 0.12 tolerated(0.99) benign(0.11) TCGA-BB-A5HZ-01 12 44782239 44782239 C A TMEM117 Missense_Mutation p.S443R 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-BB-A5HZ-01 12 51173961 51173961 G C ATF1 Missense_Mutation p.E11D 0.19 tolerated_low_confidence(0.11) benign(0.049) TCGA-BB-A5HZ-01 12 63544076 63544076 G T AVPR1A Missense_Mutation p.L181M 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-BB-A5HZ-01 14 31142517 31142517 A T SCFD1 Silent p.A350A 0.10 TCGA-BB-A5HZ-01 14 33292449 33292449 G T AKAP6 Missense_Mutation p.L1810F 0.26 tolerated(1) benign(0.005) TCGA-BB-A5HZ-01 14 75231000 75231000 A - YLPM1 Frame_Shift_Del p.N271Tfs*18 0.33 TCGA-BB-A5HZ-01 14 95572071 95572071 G A DICER1 Missense_Mutation p.P1013S 0.09 deleterious(0) probably_damaging(1) TCGA-BB-A5HZ-01 15 25417786 25417786 C A SNORD115-2 RNA 0.21 TCGA-BB-A5HZ-01 15 44890920 44890920 C A SPG11 Missense_Mutation p.K1267N 0.09 deleterious(0.03) benign(0.052) TCGA-BB-A5HZ-01 16 31088477 31088477 C T ZNF646 Missense_Mutation p.L278F 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BB-A5HZ-01 16 728110 728110 G A RHBDL1 3'UTR 0.15 TCGA-BB-A5HZ-01 17 40947945 40947945 G C WNK4 Missense_Mutation p.V1109L 0.26 tolerated(0.26) probably_damaging(0.99) TCGA-BB-A5HZ-01 17 4863359 4863359 C G SPAG7 Missense_Mutation p.E125D 0.05 tolerated(0.17) probably_damaging(0.931) TCGA-BB-A5HZ-01 17 59668555 59668555 C T NACA2 5'UTR 0.23 TCGA-BB-A5HZ-01 17 60045413 60045413 G A MED13 Missense_Mutation p.L1392F 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-BB-A5HZ-01 17 74005785 74005785 C T EVPL Silent p.A1167A 0.11 TCGA-BB-A5HZ-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.17 deleterious(0) probably_damaging(1) TCGA-BB-A5HZ-01 17 7578392 7578392 C T TP53 Missense_Mutation p.E180K 0.26 deleterious(0) probably_damaging(1) TCGA-BB-A5HZ-01 17 78328186 78328186 G A RNF213 Intron 0.17 TCGA-BB-A5HZ-01 18 18624129 18624135 GTTATCA - ROCK1 Frame_Shift_Del p.D202Cfs*9 0.23 TCGA-BB-A5HZ-01 18 6890051 6890051 C T ARHGAP28 Silent p.R408R 0.29 TCGA-BB-A5HZ-01 18 9360008 9360008 C G TWSG1 Silent p.S54S 0.55 TCGA-BB-A5HZ-01 19 11917304 11917304 G T ZNF491 Missense_Mutation p.R179I 0.22 tolerated(0.1) possibly_damaging(0.708) TCGA-BB-A5HZ-01 19 31769409 31769409 G A TSHZ3 Silent p.V430V 0.23 TCGA-BB-A5HZ-01 19 38976680 38976680 G A RYR1 Silent p.P1795P 0.25 TCGA-BB-A5HZ-01 19 40432973 40432973 G A FCGBP Silent p.C432C 0.29 TCGA-BB-A5HZ-01 19 42599578 42599578 C T POU2F2 Missense_Mutation p.A331T 0.31 deleterious(0) probably_damaging(0.998) TCGA-BB-A5HZ-01 19 43236961 43236961 A T PSG3 Missense_Mutation p.S228R 0.23 deleterious(0) probably_damaging(0.995) TCGA-BB-A5HZ-01 19 4512223 4512223 G T PLIN4 Silent p.V569V 0.36 TCGA-BB-A5HZ-01 19 48260396 48260396 G A GLTSCR2 3'Flank 0.10 TCGA-BB-A5HZ-01 19 51825371 51825371 T - IGLON5 Frame_Shift_Del p.C45Vfs*16 0.21 TCGA-BB-A5HZ-01 19 55294964 55294964 G T KIR2DL1 Missense_Mutation p.A282S 0.19 tolerated(0.54) benign(0.214) TCGA-BB-A5HZ-01 19 8808664 8808664 G A ACTL9 Missense_Mutation p.R130C 0.07 deleterious(0.04) benign(0.024) TCGA-BB-A5HZ-01 1 169267911 169267911 T C NME7 Silent p.G177G 0.29 TCGA-BB-A5HZ-01 1 19585249 19585249 C G MRTO4 Missense_Mutation p.F215L 0.11 deleterious(0.04) benign(0.037) TCGA-BB-A5HZ-01 1 201286835 201286835 C T PKP1 Nonsense_Mutation p.Q328* 0.33 TCGA-BB-A5HZ-01 1 27190210 27190210 C T SFN Silent p.R169R 0.31 TCGA-BB-A5HZ-01 1 57756745 57756745 G A DAB1 5'UTR 0.11 TCGA-BB-A5HZ-01 1 62740535 62740535 G A KANK4 Missense_Mutation p.R81C 0.51 tolerated(0.05) probably_damaging(0.991) TCGA-BB-A5HZ-01 1 93545065 93545065 G A MTF2 5'UTR 0.14 TCGA-BB-A5HZ-01 20 44518946 44518946 C A NEURL2 Missense_Mutation p.V229L 0.18 deleterious(0) possibly_damaging(0.849) TCGA-BB-A5HZ-01 20 47604842 47604842 C A ARFGEF2 Missense_Mutation p.Q760K 0.25 tolerated(0.24) benign(0.018) TCGA-BB-A5HZ-01 21 32639224 32639224 C T TIAM1 Missense_Mutation p.G22E 0.34 deleterious_low_confidence(0.02) benign(0.424) TCGA-BB-A5HZ-01 22 22869062 22869062 A C ZNF280A Missense_Mutation p.F298C 0.32 deleterious(0) probably_damaging(0.998) TCGA-BB-A5HZ-01 22 22937477 22937477 G A IGLV3-32 Missense_Mutation p.D99N 0.26 deleterious(0.01) probably_damaging(0.946) TCGA-BB-A5HZ-01 2 1241752 1241752 C T SNTG2 Missense_Mutation p.A271V 0.19 tolerated(0.13) benign(0.133) TCGA-BB-A5HZ-01 2 125521587 125521587 A T CNTNAP5 Missense_Mutation p.E798V 0.25 deleterious(0.02) benign(0.03) TCGA-BB-A5HZ-01 2 174828561 174828561 T C SP3 Missense_Mutation p.I69M 0.26 deleterious(0) possibly_damaging(0.703) TCGA-BB-A5HZ-01 2 192543841 192543841 C T NABP1 Missense_Mutation p.R73W 0.19 deleterious(0) possibly_damaging(0.536) TCGA-BB-A5HZ-01 2 220334054 220334054 A T SPEG Missense_Mutation p.H1223L 0.13 probably_damaging(1) TCGA-BB-A5HZ-01 2 43927382 43927382 C T PLEKHH2 Nonsense_Mutation p.Q429* 0.26 TCGA-BB-A5HZ-01 2 65571949 65571949 G A SPRED2 Silent p.G36G 0.15 TCGA-BB-A5HZ-01 2 75347713 75347713 T G TACR1 Missense_Mutation p.I191L 0.45 tolerated(0.3) benign(0) TCGA-BB-A5HZ-01 3 150377894 150377894 C T FAM194A Missense_Mutation p.D593N 0.28 deleterious(0) probably_damaging(0.998) TCGA-BB-A5HZ-01 3 168833867 168833867 C T MECOM Missense_Mutation p.G475D 0.17 deleterious(0) probably_damaging(1) TCGA-BB-A5HZ-01 3 49405978 49405978 C A RHOA Nonsense_Mutation p.E54* 0.09 TCGA-BB-A5HZ-01 3 8809325 8809325 G A OXTR Silent p.G183G 0.15 TCGA-BB-A5HZ-01 4 100542372 100542372 G A MTTP Missense_Mutation p.D833N 0.32 tolerated(0.41) benign(0.03) TCGA-BB-A5HZ-01 4 146576594 146576594 C T MMAA 3'UTR 0.34 TCGA-BB-A5HZ-01 4 52946083 52946083 C T SPATA18 Silent p.C451C 0.20 TCGA-BB-A5HZ-01 5 139876313 139876313 A G ANKHD1 Silent p.E818E 0.33 TCGA-BB-A5HZ-01 5 140774660 140774660 C T PCDHGA8 Silent p.T760T 0.26 TCGA-BB-A5HZ-01 5 140865760 140865760 G T PCDHGC4 Silent p.L340L 0.34 TCGA-BB-A5HZ-01 5 148747932 148747932 G A PCYOX1L Silent p.K400K 0.14 TCGA-BB-A5HZ-01 5 176638683 176638693 GGCCACTTAAC - NSD1 Frame_Shift_Del p.G1095Kfs*2 0.26 TCGA-BB-A5HZ-01 5 176662896 176662897 - T NSD1 Frame_Shift_Ins p.F1292Ifs*4 0.17 TCGA-BB-A5HZ-01 5 54429249 54429249 T A CDC20B Missense_Mutation p.N230Y 0.25 deleterious(0) possibly_damaging(0.713) TCGA-BB-A5HZ-01 6 146350618 146350618 C T GRM1 5'UTR 0.19 TCGA-BB-A5HZ-01 6 26021038 26021038 C T HIST1H3A Silent p.D107D 0.27 TCGA-BB-A5HZ-01 6 27806004 27806004 G A HIST1H2AK Silent p.G38G 0.25 TCGA-BB-A5HZ-01 6 83748144 83748144 C G UBE3D Missense_Mutation p.V220L 0.24 deleterious(0.04) benign(0.023) TCGA-BB-A5HZ-01 7 143748390 143748403 GTGCCCTGAAAAGA - OR2A5 Frame_Shift_Del p.A300Vfs*18 0.19 TCGA-BB-A5HZ-01 7 45688354 45688354 A T ADCY1 Missense_Mutation p.H369L 0.24 deleterious(0.01) possibly_damaging(0.848) TCGA-BB-A5HZ-01 7 65751528 65751528 G A TPST1 Silent p.K292K 0.32 TCGA-BB-A5HZ-01 8 139149396 139149396 G A FAM135B Missense_Mutation p.H1337Y 0.12 deleterious(0.03) benign(0.009) TCGA-BB-A5HZ-01 8 89130998 89130998 A G MMP16 Missense_Mutation p.Y268H 0.35 deleterious(0) probably_damaging(1) TCGA-BB-A5HZ-01 9 120475765 120475765 C T TLR4 Silent p.D453D 0.18 TCGA-BB-A5HZ-01 9 139912063 139912063 C T ABCA2 Missense_Mutation p.V765M 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-BB-A5HZ-01 X 142716900 142716900 G T SLITRK4 Silent p.T675T 0.48 TCGA-BB-A5HZ-01 X 1501378 1501378 T C IL3RA 3'UTR 0.24 TCGA-BB-A5HZ-01 X 48566037 48566037 C T SUV39H1 3'UTR 0.19 TCGA-BB-A6UM-01 10 112745399 112745399 C T SHOC2 Silent p.N239N 0.33 TCGA-BB-A6UM-01 10 1405960 1405960 G T ADARB2 Missense_Mutation p.Q114K 0.32 tolerated(0.33) benign(0.12) TCGA-BB-A6UM-01 10 18905212 18905212 T A NSUN6 Nonsense_Mutation p.K108* 0.45 TCGA-BB-A6UM-01 10 46968669 46968669 C T SYT15 Silent p.V89V 0.18 TCGA-BB-A6UM-01 10 73472485 73472485 T C C10orf105 3'UTR 0.42 TCGA-BB-A6UM-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.86 deleterious(0.02) probably_damaging(0.989) TCGA-BB-A6UM-01 11 123886380 123886380 C T OR10G4 Silent p.Y33Y 0.72 TCGA-BB-A6UM-01 11 20907004 20907004 T C NELL1 Missense_Mutation p.V174A 0.10 deleterious(0) possibly_damaging(0.5) TCGA-BB-A6UM-01 11 2929473 2929473 G A SLC22A18 Missense_Mutation p.R52Q 0.48 deleterious(0.03) benign(0.313) TCGA-BB-A6UM-01 11 70336291 70336291 A G SHANK2 Intron 0.38 TCGA-BB-A6UM-01 11 94759083 94759083 G A KDM4E Missense_Mutation p.R121Q 0.73 tolerated(0.06) benign(0) TCGA-BB-A6UM-01 12 10194094 10194094 A G CLEC9A 5'UTR 0.30 TCGA-BB-A6UM-01 12 12870950 12870950 G A CDKN1B Silent p.K59K 0.42 TCGA-BB-A6UM-01 12 6624076 6624076 T C NCAPD2 Missense_Mutation p.L326P 0.35 deleterious(0.02) possibly_damaging(0.606) TCGA-BB-A6UM-01 13 25743839 25743839 G A AMER2 Missense_Mutation p.P640L 0.36 deleterious(0) probably_damaging(0.999) TCGA-BB-A6UM-01 14 74665639 74665639 C T LIN52 Missense_Mutation p.R104W 0.65 deleterious(0) benign(0.298) TCGA-BB-A6UM-01 15 68582393 68582393 G A FEM1B Missense_Mutation p.D233N 0.33 tolerated(0.08) possibly_damaging(0.657) TCGA-BB-A6UM-01 15 71953002 71953002 G A THSD4 Missense_Mutation p.R429H 0.44 deleterious(0) possibly_damaging(0.86) TCGA-BB-A6UM-01 15 89383306 89383306 G A ACAN Missense_Mutation p.R173Q 0.33 tolerated(0.96) unknown(0) TCGA-BB-A6UM-01 15 90171708 90171708 C T KIF7 Missense_Mutation p.R1325Q 0.41 deleterious(0.01) possibly_damaging(0.804) TCGA-BB-A6UM-01 16 27789277 27789277 C T KIAA0556 Silent p.S1596S 0.40 TCGA-BB-A6UM-01 17 1479909 1479909 G A SLC43A2 Silent p.L510L 0.40 TCGA-BB-A6UM-01 17 18881637 18881637 T G FAM83G Missense_Mutation p.K448Q 0.45 deleterious(0.03) benign(0.124) TCGA-BB-A6UM-01 17 26874807 26874807 G C UNC119 Nonsense_Mutation p.Y166* 0.35 TCGA-BB-A6UM-01 17 26964012 26964012 T A KIAA0100 Missense_Mutation p.T650S 0.42 tolerated(0.27) benign(0.178) TCGA-BB-A6UM-01 17 32906251 32906251 C T C17orf102 Missense_Mutation p.G17R 0.40 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BB-A6UM-01 17 39578364 39578364 G A KRT37 Missense_Mutation p.T326M 0.43 deleterious(0.04) benign(0.179) TCGA-BB-A6UM-01 17 40706443 40706443 G A HSD17B1 Missense_Mutation p.G187D 0.53 deleterious(0) probably_damaging(0.999) TCGA-BB-A6UM-01 17 4883249 4883249 G A CAMTA2 Silent p.H479H 0.45 TCGA-BB-A6UM-01 18 29340271 29340271 A G SLC25A52 Silent p.F128F 0.38 TCGA-BB-A6UM-01 19 12969377 12969377 G A MAST1 Missense_Mutation p.R397Q 0.39 deleterious(0) benign(0.167) TCGA-BB-A6UM-01 19 16686787 16686787 G A MED26 3'UTR 0.40 TCGA-BB-A6UM-01 19 18649033 18649033 G A FKBP8 Silent p.S255S 0.40 TCGA-BB-A6UM-01 19 31025808 31025808 G A ZNF536 Missense_Mutation p.R742H 0.43 deleterious(0) probably_damaging(0.996) TCGA-BB-A6UM-01 19 42260735 42260735 C T CEACAM6 Nonsense_Mutation p.R98* 0.03 TCGA-BB-A6UM-01 19 44097143 44097143 C T IRGQ Missense_Mutation p.V303I 0.29 tolerated(0.49) probably_damaging(0.996) TCGA-BB-A6UM-01 19 55107774 55107774 C T LILRA1 Missense_Mutation p.A360V 0.31 deleterious(0.01) possibly_damaging(0.534) TCGA-BB-A6UM-01 1 109810668 109810668 G A CELSR2 Missense_Mutation p.V2102M 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-BB-A6UM-01 1 118527386 118527386 G A SPAG17 Nonsense_Mutation p.Q1897* 0.35 TCGA-BB-A6UM-01 1 142713494 142713494 G T RP11-417J8.6 RNA 0.11 TCGA-BB-A6UM-01 1 177247850 177247850 G A BRINP2 Silent p.R388R 0.39 TCGA-BB-A6UM-01 1 228362572 228362572 C T IBA57 Missense_Mutation p.S174L 0.67 tolerated(0.27) benign(0.004) TCGA-BB-A6UM-01 1 28293495 28293495 C T XKR8 Silent p.C324C 0.38 TCGA-BB-A6UM-01 1 46079780 46079780 A C NASP Missense_Mutation p.N507H 0.42 deleterious(0) possibly_damaging(0.738) TCGA-BB-A6UM-01 1 48694724 48694724 G C SLC5A9 Intron 0.33 TCGA-BB-A6UM-01 1 55074905 55074905 C T FAM151A 3'UTR 0.40 TCGA-BB-A6UM-01 1 70758195 70758195 A G ANKRD13C Missense_Mutation p.V364A 0.28 tolerated(0.25) probably_damaging(0.947) TCGA-BB-A6UM-01 1 94140190 94140190 G A BCAR3 Silent p.H99H 0.27 TCGA-BB-A6UM-01 21 45999780 45999780 G A KRTAP10-5 Missense_Mutation p.R226C 0.43 deleterious(0.03) possibly_damaging(0.558) TCGA-BB-A6UM-01 22 22890432 22890432 A G PRAME 3'UTR 0.43 TCGA-BB-A6UM-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.88 probably_damaging(1) TCGA-BB-A6UM-01 22 50512704 50512704 C A MLC1 Missense_Mutation p.V219L 0.80 tolerated_low_confidence(0.58) benign(0.041) TCGA-BB-A6UM-01 2 122176222 122176222 G A CLASP1 Missense_Mutation p.P766S 0.31 tolerated(0.06) probably_damaging(0.998) TCGA-BB-A6UM-01 2 141115623 141115623 A G LRP1B Missense_Mutation p.C3774R 0.41 possibly_damaging(0.712) TCGA-BB-A6UM-01 2 152319494 152319494 G A RIF1 Missense_Mutation p.E1154K 0.40 tolerated(0.13) benign(0.009) TCGA-BB-A6UM-01 2 177135048 177135048 G A MTX2 Intron 0.41 TCGA-BB-A6UM-01 2 186672341 186672341 A G FSIP2 Missense_Mutation p.Q6192R 0.44 benign(0.014) TCGA-BB-A6UM-01 2 238267677 238267677 C T COL6A3 Splice_Site p.X2136_splice 0.35 TCGA-BB-A6UM-01 2 26204037 26204037 G A KIF3C Silent p.S250S 0.26 TCGA-BB-A6UM-01 2 32289009 32289009 G C SPAST Missense_Mutation p.G37R 0.56 tolerated_low_confidence(0.57) unknown(0) TCGA-BB-A6UM-01 2 48914812 48914812 A G LHCGR 3'UTR 0.52 TCGA-BB-A6UM-01 2 85571180 85571180 G A RETSAT Missense_Mutation p.S492F 0.28 deleterious(0.01) benign(0.243) TCGA-BB-A6UM-01 2 90260152 90260152 T C IGKV1D-8 Silent p.S85S 0.31 TCGA-BB-A6UM-01 2 97474459 97474459 G A CNNM4 Missense_Mutation p.V704M 0.32 deleterious(0.04) benign(0.004) TCGA-BB-A6UM-01 3 195398109 195398109 G T SDHAP2 RNA 0.12 TCGA-BB-A6UM-01 3 67568714 67568714 C T SUCLG2 Missense_Mutation p.R206Q 0.56 tolerated(0.28) benign(0.007) TCGA-BB-A6UM-01 3 69242854 69242854 G A FRMD4B Silent p.N553N 0.39 TCGA-BB-A6UM-01 3 98506994 98506994 G A ST3GAL6 Silent p.T182T 0.23 TCGA-BB-A6UM-01 5 140516218 140516218 C G PCDHB5 Missense_Mutation p.T401S 0.49 deleterious_low_confidence(0.02) benign(0.078) TCGA-BB-A6UM-01 5 140811289 140811289 A G PCDHGA12 Silent p.A321A 0.37 TCGA-BB-A6UM-01 5 154311746 154311746 G A GEMIN5 Nonsense_Mutation p.R192* 0.45 TCGA-BB-A6UM-01 5 78671754 78671754 C T HOMER1 3'UTR 0.38 TCGA-BB-A6UM-01 5 9044681 9044681 T C SEMA5A Missense_Mutation p.H970R 0.39 deleterious(0.02) benign(0.316) TCGA-BB-A6UM-01 6 108985068 108985068 G A FOXO3 Silent p.S344S 0.32 TCGA-BB-A6UM-01 6 160494482 160494482 C T IGF2R Missense_Mutation p.P1643L 0.55 deleterious(0.01) probably_damaging(0.927) TCGA-BB-A6UM-01 6 28543105 28543105 A G SCAND3 Silent p.I459I 0.38 TCGA-BB-A6UM-01 6 88138483 88138483 A G C6ORF165 Missense_Mutation p.Q367R 0.45 tolerated(0.51) benign(0.008) TCGA-BB-A6UM-01 7 11415434 11415434 T A THSD7A Missense_Mutation p.D1654V 0.46 deleterious(0) probably_damaging(0.999) TCGA-BB-A6UM-01 7 142609710 142609710 C T TRPV5 Missense_Mutation p.A576T 0.63 deleterious(0) probably_damaging(1) TCGA-BB-A6UM-01 7 5569271 5569271 G A ACTB Silent p.A6A 0.35 TCGA-BB-A6UM-01 8 120606013 120606013 C T ENPP2 Missense_Mutation p.V406I 0.07 tolerated(1) benign(0.048) TCGA-BB-A6UM-01 8 124664536 124664536 G A KLHL38 Missense_Mutation p.R211W 0.37 deleterious(0) probably_damaging(1) TCGA-BB-A6UM-01 8 94747263 94747263 C T RBM12B Missense_Mutation p.R459H 0.37 tolerated(0.06) probably_damaging(0.917) TCGA-BB-A6UM-01 8 94828673 94828673 T C TMEM67 Missense_Mutation p.L994S 0.33 deleterious(0) probably_damaging(0.999) TCGA-BB-A6UM-01 9 111631431 111631431 G A IKBKAP Silent p.N1321N 0.47 TCGA-BB-A6UM-01 9 18826302 18826302 A G ADAMTSL1 Missense_Mutation p.T1319A 0.44 deleterious(0.03) benign(0.101) TCGA-BB-A6UM-01 9 33385283 33385283 C T AQP7 Missense_Mutation p.G250E 0.06 deleterious(0.02) possibly_damaging(0.457) TCGA-BB-A6UM-01 9 96051728 96051728 C T WNK2 Silent p.H1601H 0.41 TCGA-BB-A6UM-01 X 18189127 18189127 G A BEND2 Missense_Mutation p.L727F 0.78 deleterious(0) probably_damaging(0.997) TCGA-BB-A6UO-01 10 111643888 111643888 C T XPNPEP1 Missense_Mutation p.G256E 0.34 deleterious(0) probably_damaging(1) TCGA-BB-A6UO-01 10 113921438 113921438 T C GPAM Missense_Mutation p.Y494C 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-BB-A6UO-01 10 30915144 30915144 G A LYZL2 Missense_Mutation p.T109M 0.27 deleterious(0.04) benign(0.018) TCGA-BB-A6UO-01 10 51580580 51580580 A G NCOA4 Missense_Mutation p.I72V 0.33 tolerated(0.07) possibly_damaging(0.812) TCGA-BB-A6UO-01 11 1031902 1031902 G C MUC6 Silent p.G89G 0.07 TCGA-BB-A6UO-01 11 122830103 122830103 G A C11orf63 Missense_Mutation p.E763K 0.07 deleterious(0) probably_damaging(0.996) TCGA-BB-A6UO-01 11 125237806 125237806 C A PKNOX2 Missense_Mutation p.A51D 0.46 tolerated(0.29) benign(0.005) TCGA-BB-A6UO-01 11 1271400 1271400 G A MUC5B Silent p.T4430T 0.44 TCGA-BB-A6UO-01 11 13466583 13466583 T C BTBD10 Missense_Mutation p.Y30C 0.42 tolerated_low_confidence(0.21) benign(0) TCGA-BB-A6UO-01 11 281034 281034 G A NLRP6 Missense_Mutation p.D434N 0.10 tolerated(0.52) benign(0.002) TCGA-BB-A6UO-01 11 4944789 4944789 A G OR51G1 Missense_Mutation p.S261P 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-BB-A6UO-01 11 58602255 58602255 C T GLYATL2 Missense_Mutation p.E178K 0.50 tolerated(0.61) probably_damaging(0.91) TCGA-BB-A6UO-01 11 6261423 6261423 C T CNGA4 Silent p.G133G 0.32 TCGA-BB-A6UO-01 11 65315555 65315555 G T LTBP3 Intron 0.10 TCGA-BB-A6UO-01 12 13529204 13529204 C T C12orf36 Missense_Mutation p.D46N 0.34 possibly_damaging(0.728) TCGA-BB-A6UO-01 12 56222200 56222201 - G DNAJC14 Frame_Shift_Ins p.G82Rfs*4 0.23 TCGA-BB-A6UO-01 12 66742795 66742795 G A GRIP1 3'UTR 0.29 TCGA-BB-A6UO-01 12 72312230 72312230 G T TBC1D15 Splice_Site p.X518_splice 0.25 TCGA-BB-A6UO-01 12 76442089 76442089 C A NAP1L1 3'UTR 0.17 TCGA-BB-A6UO-01 13 24233325 24233325 G C TNFRSF19 Missense_Mutation p.K194N 0.33 deleterious(0) probably_damaging(0.992) TCGA-BB-A6UO-01 13 25881995 25881995 A C NUPL1 Silent p.P53P 0.22 TCGA-BB-A6UO-01 13 78492249 78492249 C A EDNRB Missense_Mutation p.D244Y 0.31 deleterious(0.04) possibly_damaging(0.906) TCGA-BB-A6UO-01 14 23450686 23450687 - AG AJUBA Frame_Shift_Ins p.V264Lfs*2 0.58 TCGA-BB-A6UO-01 14 31355514 31355514 T C COCH Silent p.D491D 0.41 TCGA-BB-A6UO-01 14 54944719 54944719 G A GMFB 3'UTR 0.56 TCGA-BB-A6UO-01 14 75283661 75283661 A G YLPM1 Missense_Mutation p.M1905V 0.20 possibly_damaging(0.64) TCGA-BB-A6UO-01 15 40231714 40231714 G T EIF2AK4 Missense_Mutation p.E51D 0.29 deleterious(0.01) benign(0.001) TCGA-BB-A6UO-01 15 56140620 56140620 T G NEDD4 Silent p.R845R 0.07 TCGA-BB-A6UO-01 15 59359272 59359272 A G RNF111 Missense_Mutation p.Y559C 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BB-A6UO-01 15 70959587 70959587 G A UACA Nonsense_Mutation p.Q1146* 0.04 TCGA-BB-A6UO-01 16 20497947 20497947 G A ACSM2A Missense_Mutation p.A561T 0.14 tolerated(0.45) benign(0.001) TCGA-BB-A6UO-01 16 20497952 20497952 G A ACSM2A Silent p.K562K 0.15 TCGA-BB-A6UO-01 16 20548509 20548509 T G ACSM2B 3'UTR 0.06 TCGA-BB-A6UO-01 16 23364163 23364163 T C SCNN1B Missense_Mutation p.L118P 0.30 tolerated(0.14) probably_damaging(0.999) TCGA-BB-A6UO-01 16 31091550 31091550 G C ZNF646 Missense_Mutation p.G1302A 0.39 tolerated(0.13) probably_damaging(0.996) TCGA-BB-A6UO-01 16 538871 538871 C A RAB11FIP3 Missense_Mutation p.S379Y 0.18 deleterious(0) probably_damaging(0.91) TCGA-BB-A6UO-01 16 55903523 55903523 G A CES5A Missense_Mutation p.T213I 0.26 deleterious(0) possibly_damaging(0.772) TCGA-BB-A6UO-01 16 67237408 67237408 T C ELMO3 Silent p.Y677Y 0.27 TCGA-BB-A6UO-01 16 70998662 70998662 C T HYDIN Silent p.A1919A 0.20 TCGA-BB-A6UO-01 16 721203 721203 T C RHOT2 Missense_Mutation p.L290P 0.10 tolerated(0.89) benign(0) TCGA-BB-A6UO-01 16 721204 721204 G A RHOT2 Splice_Site p.X290_splice 0.10 TCGA-BB-A6UO-01 16 72984482 72984482 G A ZFHX3 Silent p.I1034I 0.28 TCGA-BB-A6UO-01 16 85839295 85839295 T C COX4I1 Intron 0.38 TCGA-BB-A6UO-01 17 2318556 2318556 T A AC006435.1 Missense_Mutation p.L32F 0.63 unknown(0) TCGA-BB-A6UO-01 17 25748794 25748794 C T TBC1D3P5 RNA 0.23 TCGA-BB-A6UO-01 17 30814693 30814693 G A CDK5R1 Missense_Mutation p.D19N 0.24 tolerated(0.18) benign(0.018) TCGA-BB-A6UO-01 17 36864101 36864101 C T MLLT6 Silent p.Y110Y 0.24 TCGA-BB-A6UO-01 17 53042103 53042104 - TG COX11 Frame_Shift_Ins p.A160Mfs*37 0.18 TCGA-BB-A6UO-01 17 7577017 7577017 A C TP53 Splice_Site p.X307_splice 0.59 TCGA-BB-A6UO-01 17 76808947 76808947 C T USP36 Missense_Mutation p.G468R 0.33 tolerated(0.08) possibly_damaging(0.813) TCGA-BB-A6UO-01 18 48584569 48584569 C T SMAD4 Nonsense_Mutation p.Q248* 0.40 TCGA-BB-A6UO-01 19 13470441 13470441 C G CACNA1A Silent p.G319G 0.30 TCGA-BB-A6UO-01 19 15220102 15220102 C T SYDE1 Silent p.G108G 0.52 TCGA-BB-A6UO-01 19 1912891 1912891 G A ADAT3 Missense_Mutation p.R282H 0.40 tolerated(0.13) benign(0.035) TCGA-BB-A6UO-01 19 39421748 39421748 G A MRPS12 5'UTR 0.28 TCGA-BB-A6UO-01 19 4101229 4101229 C T MAP2K2 Missense_Mutation p.R193Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-BB-A6UO-01 19 44097187 44097187 G A IRGQ Missense_Mutation p.A288V 0.28 tolerated(0.41) benign(0.027) TCGA-BB-A6UO-01 19 49575540 49575540 C T KCNA7 Silent p.A101A 0.67 TCGA-BB-A6UO-01 19 50157646 50157646 G A SCAF1 Silent p.A1119A 0.22 TCGA-BB-A6UO-01 19 57176557 57176557 G T ZNF835 Missense_Mutation p.L4I 0.27 tolerated(0.18) possibly_damaging(0.794) TCGA-BB-A6UO-01 19 8203164 8203164 G A FBN3 Silent p.P354P 0.40 TCGA-BB-A6UO-01 1 10132224 10132224 C G UBE4B Missense_Mutation p.L55V 0.13 deleterious(0.01) benign(0.364) TCGA-BB-A6UO-01 1 1271635 1271635 C T DVL1 Missense_Mutation p.G634R 0.40 deleterious(0) unknown(0) TCGA-BB-A6UO-01 1 150128298 150128298 G C PLEKHO1 Silent p.L72L 0.27 TCGA-BB-A6UO-01 1 155152405 155152405 C A TRIM46 Missense_Mutation p.A528E 0.26 deleterious(0) probably_damaging(0.999) TCGA-BB-A6UO-01 1 156255506 156255506 G T TMEM79 Silent p.R163R 0.21 TCGA-BB-A6UO-01 1 19451155 19451155 A G UBR4 Silent p.Y3156Y 0.22 TCGA-BB-A6UO-01 1 212965297 212965297 C T TATDN3 Missense_Mutation p.H12Y 0.15 deleterious(0) probably_damaging(1) TCGA-BB-A6UO-01 1 22191370 22191370 C T HSPG2 Missense_Mutation p.R1531H 0.25 possibly_damaging(0.782) TCGA-BB-A6UO-01 1 234601437 234601437 T A TARBP1 Missense_Mutation p.L422F 0.16 tolerated(0.26) probably_damaging(0.999) TCGA-BB-A6UO-01 1 38027685 38027685 G A DNALI1 Missense_Mutation p.A216T 0.27 tolerated(0.51) benign(0.04) TCGA-BB-A6UO-01 1 40539591 40539591 T C PPT1 3'UTR 0.28 TCGA-BB-A6UO-01 1 67724869 67724869 C T IL23R 3'UTR 0.18 TCGA-BB-A6UO-01 1 74507187 74507187 T C LRRIQ3 Silent p.K476K 0.20 TCGA-BB-A6UO-01 1 93301939 93301939 A G RPL5 Missense_Mutation p.I173V 0.33 tolerated(0.29) benign(0) TCGA-BB-A6UO-01 1 9790619 9790619 T A CLSTN1 Missense_Mutation p.N965Y 0.21 deleterious(0.02) benign(0.092) TCGA-BB-A6UO-01 20 35128025 35128025 C T DLGAP4 Intron 0.33 TCGA-BB-A6UO-01 20 47841505 47841505 A G DDX27 Missense_Mutation p.K195E 0.36 tolerated(0.17) benign(0.002) TCGA-BB-A6UO-01 20 60794928 60794928 C A HRH3 Missense_Mutation p.W33C 0.54 tolerated(0.11) possibly_damaging(0.759) TCGA-BB-A6UO-01 22 30038273 30038299 AGGTAGGCTCAAAGAAGAAAAATGTAT - NF2 Splice_Site p.X149_splice 0.19 TCGA-BB-A6UO-01 22 38696830 38696830 T C CSNK1E Missense_Mutation p.K155R 0.31 deleterious_low_confidence(0.05) benign(0.031) TCGA-BB-A6UO-01 22 41553243 41553243 A G EP300 Missense_Mutation p.Y1111C 0.25 probably_damaging(1) TCGA-BB-A6UO-01 2 164467739 164467739 C G FIGN Missense_Mutation p.Q201H 0.31 deleterious(0) possibly_damaging(0.781) TCGA-BB-A6UO-01 2 172569318 172569319 - C DYNC1I2 Frame_Shift_Ins p.S127Lfs*11 0.21 TCGA-BB-A6UO-01 2 178095969 178095969 G A NFE2L2 Silent p.L454L 0.28 TCGA-BB-A6UO-01 2 219925177 219925177 G T IHH Silent p.R5R 0.56 TCGA-BB-A6UO-01 2 224831757 224831757 A G MRPL44 3'UTR 0.27 TCGA-BB-A6UO-01 2 24305861 24305861 A T TP53I3 Silent p.T100T 0.23 TCGA-BB-A6UO-01 2 24533505 24533505 T C ITSN2 Missense_Mutation p.I137V 0.27 tolerated(0.57) benign(0.043) TCGA-BB-A6UO-01 2 26204611 26204611 G A KIF3C Missense_Mutation p.T59I 0.28 probably_damaging(0.999) TCGA-BB-A6UO-01 2 43452464 43452465 - G ZFP36L2 Frame_Shift_Ins p.R160Pfs*314 0.28 TCGA-BB-A6UO-01 2 45807151 45807151 G A SRBD1 Missense_Mutation p.S312F 0.30 tolerated(0.43) benign(0.3) TCGA-BB-A6UO-01 2 60688508 60688508 G A BCL11A Silent p.Y513Y 0.21 TCGA-BB-A6UO-01 3 108819312 108819312 C T MORC1 Missense_Mutation p.R89Q 0.31 deleterious(0.05) benign(0.408) TCGA-BB-A6UO-01 3 131415428 131415428 G A CPNE4 Silent p.D155D 0.25 TCGA-BB-A6UO-01 3 13544481 13544481 G A HDAC11 Splice_Site p.X217_splice 0.46 TCGA-BB-A6UO-01 3 167813030 167813030 T C GOLIM4 Missense_Mutation p.Q15R 0.08 deleterious(0) probably_damaging(0.998) TCGA-BB-A6UO-01 3 184296225 184296225 C T EPHB3 Missense_Mutation p.S591L 0.30 tolerated(0.19) benign(0.002) TCGA-BB-A6UO-01 3 190338140 190338140 C G IL1RAP Nonsense_Mutation p.S205* 0.36 TCGA-BB-A6UO-01 3 196730732 196730732 G A MFI2 Intron 0.30 TCGA-BB-A6UO-01 3 64133296 64133296 T C PRICKLE2 Silent p.K290K 0.36 TCGA-BB-A6UO-01 4 153332540 153332558 TGTGTATGTTCATCTTCTC - FBXW7 Frame_Shift_Del p.R133Ifs*30 0.29 TCGA-BB-A6UO-01 4 72399991 72399991 C A SLC4A4 Missense_Mutation p.N776K 0.33 deleterious(0.01) probably_damaging(1) TCGA-BB-A6UO-01 4 75971539 75971539 C T PARM1 3'UTR 0.62 TCGA-BB-A6UO-01 4 77977406 77977406 T C CCNI Missense_Mutation p.D105G 0.23 deleterious(0) benign(0.026) TCGA-BB-A6UO-01 4 877870 877870 C T GAK Missense_Mutation p.A404T 0.16 tolerated(0.32) benign(0.156) TCGA-BB-A6UO-01 5 132440088 132440088 C T HSPA4 Missense_Mutation p.S828L 0.29 tolerated(0.1) benign(0.023) TCGA-BB-A6UO-01 5 140720363 140720363 C A PCDHGA2 Missense_Mutation p.L609I 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.764) TCGA-BB-A6UO-01 5 140855787 140855787 A T PCDHGC3 Missense_Mutation p.Y35F 0.31 deleterious(0) probably_damaging(0.999) TCGA-BB-A6UO-01 5 145664246 145664246 A T RBM27 Missense_Mutation p.K1017M 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-BB-A6UO-01 5 160047449 160047449 G T ATP10B Missense_Mutation p.S774Y 0.21 deleterious(0) probably_damaging(1) TCGA-BB-A6UO-01 5 179046282 179046286 CTTTC - HNRNPH1 Frame_Shift_Del p.E174Nfs*7 0.23 TCGA-BB-A6UO-01 5 33576265 33576265 T A ADAMTS12 Missense_Mutation p.D1289V 0.30 tolerated(0.18) benign(0.03) TCGA-BB-A6UO-01 5 36976406 36976406 A G NIPBL Missense_Mutation p.Y466C 0.30 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-BB-A6UO-01 5 37329378 37329378 T C NUP155 Missense_Mutation p.Y576C 0.29 deleterious(0) probably_damaging(0.976) TCGA-BB-A6UO-01 5 76264840 76264840 G A CRHBP 3'UTR 0.30 TCGA-BB-A6UO-01 6 132030611 132030611 C T CTAGE9 Missense_Mutation p.R516K 0.27 deleterious(0.02) benign(0.233) TCGA-BB-A6UO-01 6 146678785 146678785 G A GRM1 Silent p.V519V 0.27 TCGA-BB-A6UO-01 6 149925823 149925824 TA - KATNA1 Frame_Shift_Del p.I199Nfs*11 0.21 TCGA-BB-A6UO-01 6 31238165 31238165 C A HLA-C Silent p.L239L 0.28 TCGA-BB-A6UO-01 7 138603675 138603675 G A KIAA1549 Missense_Mutation p.R233W 0.22 deleterious(0.03) benign(0.001) TCGA-BB-A6UO-01 7 138943235 138943235 A G UBN2 Missense_Mutation p.Y222C 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-BB-A6UO-01 7 31378057 31378057 C A NEUROD6 Nonsense_Mutation p.E276* 0.25 TCGA-BB-A6UO-01 7 39500156 39500156 G A POU6F2 Silent p.T471T 0.19 TCGA-BB-A6UO-01 7 66660159 66660159 C T TYW1 Silent p.G604G 0.23 TCGA-BB-A6UO-01 7 95457426 95457426 T C DYNC1I1 Silent p.L141L 0.31 TCGA-BB-A6UO-01 8 100443876 100443876 A T VPS13B Missense_Mutation p.K1065M 0.18 deleterious(0) possibly_damaging(0.484) TCGA-BB-A6UO-01 8 105521276 105521276 G C LRP12 Missense_Mutation p.R55G 0.21 tolerated(0.06) benign(0.179) TCGA-BB-A6UO-01 8 113246683 113246683 G A CSMD3 Missense_Mutation p.R3551C 0.45 deleterious(0) possibly_damaging(0.856) TCGA-BB-A6UO-01 8 113418852 113418852 A T CSMD3 Missense_Mutation p.C1904S 0.49 deleterious(0.01) possibly_damaging(0.705) TCGA-BB-A6UO-01 8 124138344 124138344 A G TBC1D31 Missense_Mutation p.N540S 0.28 tolerated(0.06) benign(0.113) TCGA-BB-A6UO-01 8 144944616 144944616 G A EPPK1 Missense_Mutation p.R936W 0.09 possibly_damaging(0.75) TCGA-BB-A6UO-01 8 54142384 54142384 C T OPRK1 Missense_Mutation p.D206N 0.16 tolerated(0.64) benign(0.221) TCGA-BB-A6UO-01 8 55533698 55533698 C T RP1 Missense_Mutation p.R58C 0.19 deleterious(0) probably_damaging(1) TCGA-BB-A6UO-01 8 72234072 72234072 A C EYA1 Silent p.T105T 0.26 TCGA-BB-A6UO-01 9 125642364 125642364 A G RC3H2 Missense_Mutation p.L334S 0.40 deleterious(0) probably_damaging(0.916) TCGA-BB-A6UO-01 9 139649881 139649881 C T LCN8 Missense_Mutation p.R105H 0.32 tolerated(1) benign(0) TCGA-BB-A6UO-01 9 21217217 21217217 G A IFNA16 Missense_Mutation p.H30Y 0.51 tolerated(0.08) benign(0.141) TCGA-BB-A6UO-01 9 32784684 32784684 C T TMEM215 Missense_Mutation p.S168L 0.46 tolerated(0.15) probably_damaging(0.99) TCGA-BB-A6UO-01 9 34371652 34371652 G A KIAA1161 Silent p.G396G 0.59 TCGA-BB-A6UO-01 9 86506407 86506407 T C KIF27 Missense_Mutation p.I538V 0.38 tolerated(0.11) benign(0.025) TCGA-BB-A6UO-01 X 119760995 119760995 C T C1GALT1C1 Silent p.L9L 0.22 TCGA-BB-A6UO-01 X 123019596 123019596 T C XIAP Silent p.N28N 0.24 TCGA-BB-A6UO-01 X 133620520 133620520 A G HPRT1 Missense_Mutation p.K115R 0.26 tolerated(0.13) benign(0.072) TCGA-BB-A6UO-01 X 53560975 53560975 G A HUWE1 Missense_Mutation p.H4339Y 0.38 unknown(0) TCGA-BB-A6UO-01 X 63557245 63557245 A T MTMR8 Nonsense_Mutation p.L335* 0.19 TCGA-BB-A6UO-01 X 69519024 69519024 T - KIF4A Frame_Shift_Del p.I163Nfs*9 0.18 TCGA-BB-A6UO-01 X 70753100 70753100 C T OGT 5'UTR 0.42 TCGA-C9-A47Z-01 10 121658137 121658137 C G SEC23IP Missense_Mutation p.P121R 0.22 deleterious(0.01) possibly_damaging(0.474) TCGA-C9-A47Z-01 10 74714497 74714497 G A PLA2G12B 5'UTR 0.24 TCGA-C9-A47Z-01 10 99192246 99192246 G C PGAM1 Missense_Mutation p.E244Q 0.25 tolerated(0.17) possibly_damaging(0.591) TCGA-C9-A47Z-01 11 134134901 134134908 GTTGAGTG - ACAD8 3'UTR 0.47 TCGA-C9-A47Z-01 11 16812675 16812675 C T PLEKHA7 Silent p.P939P 0.45 TCGA-C9-A47Z-01 11 17793947 17793947 G A KCNC1 Missense_Mutation p.V436M 0.30 deleterious(0) probably_damaging(1) TCGA-C9-A47Z-01 11 48238492 48238492 T A OR4B1 Missense_Mutation p.V44D 0.14 deleterious(0) possibly_damaging(0.905) TCGA-C9-A47Z-01 11 55606644 55606644 C G OR5D16 Silent p.S139S 0.41 TCGA-C9-A47Z-01 11 58318551 58318551 G A LPXN Missense_Mutation p.P163L 0.32 deleterious(0.02) benign(0.301) TCGA-C9-A47Z-01 11 63273846 63273846 A C LGALS12 5'UTR 0.36 TCGA-C9-A47Z-01 11 64597180 64597180 C T CDC42BPG Missense_Mutation p.G1244S 0.31 tolerated(1) probably_damaging(1) TCGA-C9-A47Z-01 11 65660427 65660427 C G FOSL1 Missense_Mutation p.R249P 0.60 deleterious(0) probably_damaging(0.989) TCGA-C9-A47Z-01 11 66358941 66358941 C T CCDC87 Missense_Mutation p.E516K 0.21 deleterious(0) probably_damaging(0.994) TCGA-C9-A47Z-01 11 70282397 70282397 C T CTTN Silent p.I596I 0.07 TCGA-C9-A47Z-01 11 70332420 70332420 G A SHANK2 Silent p.N1327N 0.06 TCGA-C9-A47Z-01 11 70333577 70333577 C T SHANK2 Missense_Mutation p.V942M 0.20 tolerated(0.19) benign(0.339) TCGA-C9-A47Z-01 11 7324329 7324329 G A SYT9 Missense_Mutation p.V69M 0.17 deleterious(0) probably_damaging(0.999) TCGA-C9-A47Z-01 11 77377983 77377983 G C RSF1 Silent p.V1435V 0.20 TCGA-C9-A47Z-01 11 8752423 8752423 C T ST5 Silent p.T138T 0.10 TCGA-C9-A47Z-01 11 88338041 88338041 G A GRM5 Silent p.N413N 0.27 TCGA-C9-A47Z-01 12 109673453 109673453 G C ACACB Splice_Site p.X1482_splice 0.20 TCGA-C9-A47Z-01 12 118456874 118456874 C T RFC5 Intron 0.27 TCGA-C9-A47Z-01 12 2719737 2719737 C T CACNA1C Missense_Mutation p.R1217W 0.20 deleterious(0) probably_damaging(0.971) TCGA-C9-A47Z-01 12 46230632 46230632 G T ARID2 Missense_Mutation p.R294I 0.35 deleterious(0) probably_damaging(0.996) TCGA-C9-A47Z-01 12 58021632 58021632 C T B4GALNT1 Missense_Mutation p.A385T 0.38 deleterious(0.01) possibly_damaging(0.837) TCGA-C9-A47Z-01 13 77661767 77661767 G A MYCBP2 Missense_Mutation p.A3538V 0.19 probably_damaging(0.98) TCGA-C9-A47Z-01 14 20612591 20612591 A T OR4N5 Nonsense_Mutation p.K233* 0.36 TCGA-C9-A47Z-01 14 21944822 21944822 C T TOX4 5'Flank 0.19 TCGA-C9-A47Z-01 14 74824664 74824664 C T VRTN Missense_Mutation p.A393V 0.10 tolerated(0.33) benign(0.162) TCGA-C9-A47Z-01 14 95034592 95034592 C T SERPINA4 Silent p.G350G 0.20 TCGA-C9-A47Z-01 15 21071431 21071431 C A POTEB2 Missense_Mutation p.K60N 0.17 tolerated_low_confidence(0.1) possibly_damaging(0.842) TCGA-C9-A47Z-01 15 63948379 63948379 T C HERC1 Missense_Mutation p.I3260V 0.31 probably_damaging(0.946) TCGA-C9-A47Z-01 15 67768123 67768123 C A IQCH Silent p.I922I 0.17 TCGA-C9-A47Z-01 15 79760681 79760681 C T KIAA1024 Silent p.T902T 0.41 TCGA-C9-A47Z-01 16 16205396 16205396 G A ABCC1 Silent p.T1012T 0.38 TCGA-C9-A47Z-01 16 28909674 28909674 C T ATP2A1 Missense_Mutation p.R556W 0.19 deleterious(0) possibly_damaging(0.802) TCGA-C9-A47Z-01 16 56623531 56623531 C T MT3 Missense_Mutation p.S10F 0.23 deleterious(0) unknown(0) TCGA-C9-A47Z-01 16 67683844 67683844 G A RLTPR Silent p.P685P 0.20 TCGA-C9-A47Z-01 16 81927367 81927367 G A PLCG2 Missense_Mutation p.R347H 0.12 deleterious(0) possibly_damaging(0.825) TCGA-C9-A47Z-01 16 90162475 90162475 G A TUBB8P7 RNA 0.32 TCGA-C9-A47Z-01 17 10541586 10541586 C T MYH3 Missense_Mutation p.R1168Q 0.33 tolerated(0.15) probably_damaging(0.988) TCGA-C9-A47Z-01 17 19289768 19289768 C G MFAP4 Missense_Mutation p.R56T 0.57 deleterious(0.02) benign(0) TCGA-C9-A47Z-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.38 deleterious(0) probably_damaging(1) TCGA-C9-A47Z-01 17 7579379 7579380 - A TP53 Frame_Shift_Ins p.Y103Lfs*46 0.30 TCGA-C9-A47Z-01 18 30092789 30092789 C T WBP11P1 RNA 0.16 TCGA-C9-A47Z-01 18 67673621 67673621 T C RTTN Missense_Mutation p.Q2174R 0.25 deleterious(0.01) benign(0.154) TCGA-C9-A47Z-01 19 31770591 31770591 C T TSHZ3 Silent p.T36T 0.55 TCGA-C9-A47Z-01 19 35741544 35741544 A T LSR Missense_Mutation p.R194W 0.12 deleterious(0) probably_damaging(0.994) TCGA-C9-A47Z-01 19 39233740 39233742 CTC - CAPN12 In_Frame_Del p.E80del 0.26 TCGA-C9-A47Z-01 19 4102431 4102431 C A MAP2K2 Missense_Mutation p.Q157H 0.33 tolerated(0.57) benign(0.14) TCGA-C9-A47Z-01 19 49526334 49526334 C T CGB Missense_Mutation p.A103T 0.36 deleterious(0) benign(0.442) TCGA-C9-A47Z-01 19 49631231 49631231 C T PPFIA3 Missense_Mutation p.T34M 0.39 deleterious(0) possibly_damaging(0.724) TCGA-C9-A47Z-01 19 50168132 50168132 G A IRF3 Intron 0.48 TCGA-C9-A47Z-01 19 50208484 50208484 G A CPT1C Missense_Mutation p.G298E 0.26 deleterious(0.02) benign(0.086) TCGA-C9-A47Z-01 19 56552435 56552435 C A NLRP5 Silent p.P978P 0.19 TCGA-C9-A47Z-01 1 109338894 109338894 G A STXBP3 Silent p.V383V 0.27 TCGA-C9-A47Z-01 1 11199700 11199700 C T MTOR Missense_Mutation p.V1630I 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-C9-A47Z-01 1 114438918 114438918 C A AP4B1 Missense_Mutation p.C491F 0.31 deleterious(0) probably_damaging(0.985) TCGA-C9-A47Z-01 1 12030858 12030858 C T PLOD1 Silent p.P629P 0.47 TCGA-C9-A47Z-01 1 150667254 150667254 T A GOLPH3L Missense_Mutation p.M21L 0.61 tolerated(0.34) benign(0) TCGA-C9-A47Z-01 1 158224994 158224994 A G CD1A Missense_Mutation p.N60S 0.17 tolerated(0.46) benign(0.002) TCGA-C9-A47Z-01 1 158669950 158669950 G T OR6K2 Missense_Mutation p.L165M 0.38 tolerated(0.13) probably_damaging(0.957) TCGA-C9-A47Z-01 1 161928383 161928383 C G ATF6 Missense_Mutation p.S651C 0.22 deleterious(0.01) possibly_damaging(0.717) TCGA-C9-A47Z-01 1 185277930 185277930 A G IVNS1ABP Splice_Site p.X119_splice 0.24 TCGA-C9-A47Z-01 1 197390396 197390396 T A CRB1 Missense_Mutation p.C480S 0.26 deleterious(0) probably_damaging(0.999) TCGA-C9-A47Z-01 1 248308511 248308511 G C OR2M5 Missense_Mutation p.S21T 0.46 tolerated(0.61) benign(0.023) TCGA-C9-A47Z-01 1 36211157 36211157 G A CLSPN Missense_Mutation p.S954F 0.38 deleterious(0) probably_damaging(0.964) TCGA-C9-A47Z-01 1 75009657 75009657 C G TNNI3K Missense_Mutation p.D934E 0.14 deleterious_low_confidence(0) benign(0.005) TCGA-C9-A47Z-01 1 91405593 91405593 G A ZNF644 Missense_Mutation p.R440C 0.15 deleterious(0) probably_damaging(0.999) TCGA-C9-A47Z-01 20 23731298 23731298 C T CST1 Missense_Mutation p.R69Q 0.41 tolerated(0.54) benign(0.013) TCGA-C9-A47Z-01 20 56078540 56078540 C A CTCFL Missense_Mutation p.G598C 0.08 deleterious(0.03) possibly_damaging(0.513) TCGA-C9-A47Z-01 20 8769136 8769136 A T PLCB1 Missense_Mutation p.N1051I 0.31 deleterious(0.05) benign(0.431) TCGA-C9-A47Z-01 22 19349267 19349267 C A HIRA Missense_Mutation p.V655L 0.35 tolerated(0.5) benign(0.001) TCGA-C9-A47Z-01 22 32481007 32481007 C T SLC5A1 Missense_Mutation p.R336C 0.16 deleterious(0) probably_damaging(1) TCGA-C9-A47Z-01 22 37891791 37891791 C A CARD10 Missense_Mutation p.R760L 0.39 tolerated(0.09) benign(0.414) TCGA-C9-A47Z-01 2 10560021 10560021 C T HPCAL1 Silent p.D46D 0.43 TCGA-C9-A47Z-01 2 112922739 112922739 C A FBLN7 Missense_Mutation p.H133N 0.57 tolerated(0.31) benign(0.063) TCGA-C9-A47Z-01 2 215880300 215880300 G A ABCA12 Silent p.L624L 0.23 TCGA-C9-A47Z-01 2 217142549 217142549 C A MARCH4 Missense_Mutation p.Q237H 0.41 tolerated(0.1) probably_damaging(0.969) TCGA-C9-A47Z-01 2 228884074 228884074 G T SPHKAP Missense_Mutation p.A499E 0.21 deleterious(0) probably_damaging(0.985) TCGA-C9-A47Z-01 2 56602951 56602951 G T CCDC85A Missense_Mutation p.G485C 0.71 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-C9-A47Z-01 2 70904981 70904981 G T ADD2 Missense_Mutation p.S471Y 0.25 tolerated(0.08) possibly_damaging(0.526) TCGA-C9-A47Z-01 2 74777456 74777456 G A LOXL3 Silent p.N111N 0.26 TCGA-C9-A47Z-01 3 129233302 129233302 G C IFT122 Missense_Mutation p.D1071H 0.17 deleterious(0) possibly_damaging(0.824) TCGA-C9-A47Z-01 3 183474440 183474440 G A YEATS2 Silent p.Q505Q 0.46 TCGA-C9-A47Z-01 3 3887354 3887354 G T LRRN1 Missense_Mutation p.M343I 0.23 deleterious(0.01) possibly_damaging(0.492) TCGA-C9-A47Z-01 3 46009275 46009275 G A FYCO1 Silent p.F517F 0.24 TCGA-C9-A47Z-01 3 53125985 53125985 C T RFT1 Silent p.E520E 0.12 TCGA-C9-A47Z-01 4 118005434 118005434 C A TRAM1L1 3'UTR 0.79 TCGA-C9-A47Z-01 4 175898692 175898693 - A ADAM29 Frame_Shift_Ins p.K675Efs*25 0.49 TCGA-C9-A47Z-01 4 72338772 72338772 G T SLC4A4 Intron 0.60 TCGA-C9-A47Z-01 4 85525494 85525494 C A CDS1 Silent p.L72L 0.19 TCGA-C9-A47Z-01 5 13862786 13862786 T C DNAH5 Missense_Mutation p.D1556G 0.15 benign(0.008) TCGA-C9-A47Z-01 5 140242764 140242764 G A AC005609.1 Missense_Mutation p.T71M 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-C9-A47Z-01 5 147863825 147863825 C G HTR4 Missense_Mutation p.L398F 0.21 tolerated_low_confidence(0.19) benign(0) TCGA-C9-A47Z-01 5 26885932 26885932 C T CDH9 Missense_Mutation p.R558H 0.16 deleterious(0.04) probably_damaging(0.93) TCGA-C9-A47Z-01 5 79372723 79372723 C T THBS4 Silent p.V646V 0.31 TCGA-C9-A47Z-01 6 160225638 160225638 G A PNLDC1 Missense_Mutation p.D133N 0.11 tolerated(0.72) benign(0.002) TCGA-C9-A47Z-01 6 165715502 165715502 C T C6orf118 Silent p.A103A 0.41 TCGA-C9-A47Z-01 6 167708120 167708120 A G UNC93A Missense_Mutation p.K68R 0.34 deleterious(0) probably_damaging(0.999) TCGA-C9-A47Z-01 6 27791925 27791925 G A HIST1H4J Missense_Mutation p.G8E 0.29 deleterious_low_confidence(0) unknown(0) TCGA-C9-A47Z-01 6 30550906 30550906 G A ABCF1 Missense_Mutation p.V286M 0.40 tolerated(0.06) possibly_damaging(0.727) TCGA-C9-A47Z-01 6 35773625 35773625 G A LHFPL5 Missense_Mutation p.G60S 0.32 deleterious(0) probably_damaging(1) TCGA-C9-A47Z-01 6 42932843 42932843 T C PEX6 Missense_Mutation p.Q879R 0.37 tolerated(0.14) possibly_damaging(0.596) TCGA-C9-A47Z-01 6 50810826 50810826 G A TFAP2B Silent p.T368T 0.43 TCGA-C9-A47Z-01 6 55638975 55638975 A C BMP5 Missense_Mutation p.F300C 0.46 deleterious(0) probably_damaging(0.999) TCGA-C9-A47Z-01 6 83848195 83848195 T G DOPEY1 Missense_Mutation p.D1478E 0.28 tolerated(0.05) possibly_damaging(0.764) TCGA-C9-A47Z-01 6 88140792 88140792 C T C6ORF165 Missense_Mutation p.L401F 0.12 tolerated(0.06) benign(0.25) TCGA-C9-A47Z-01 6 94120078 94120078 C T EPHA7 Intron 0.50 TCGA-C9-A47Z-01 7 117232264 117232264 A T CFTR Missense_Mutation p.E681D 0.54 tolerated(0.17) benign(0.007) TCGA-C9-A47Z-01 7 18684301 18684301 T A HDAC9 Missense_Mutation p.V307D 0.62 tolerated(0.14) probably_damaging(0.947) TCGA-C9-A47Z-01 7 2558231 2558235 AGGTA - LFNG 5'Flank 0.28 TCGA-C9-A47Z-01 7 79082343 79082343 G A MAGI2 Silent p.V98V 0.26 TCGA-C9-A47Z-01 7 82584358 82584358 C T PCLO Missense_Mutation p.G1971S 0.23 unknown(0) TCGA-C9-A47Z-01 8 126448672 126448672 G A TRIB1 Missense_Mutation p.E360K 0.07 deleterious(0.02) benign(0.035) TCGA-C9-A47Z-01 8 139164619 139164619 G A FAM135B Missense_Mutation p.A700V 0.52 tolerated(0.11) benign(0.059) TCGA-C9-A47Z-01 8 144874944 144874944 C T SCRIB Missense_Mutation p.E1371K 0.35 possibly_damaging(0.493) TCGA-C9-A47Z-01 9 115456514 115456514 C T INIP Splice_Site p.X9_splice 0.47 TCGA-C9-A47Z-01 9 117266866 117266866 G A DFNB31 Silent p.F72F 0.67 TCGA-C9-A47Z-01 9 121976078 121976078 G T BRINP1 Intron 0.14 TCGA-C9-A47Z-01 9 2086964 2086964 C A SMARCA2 Missense_Mutation p.L888I 0.74 benign(0.011) TCGA-C9-A47Z-01 X 100183483 100183483 C A XKRX 5'UTR 0.24 TCGA-C9-A47Z-01 X 101908796 101908796 G T GPRASP1 5'UTR 0.17 TCGA-C9-A47Z-01 X 103216808 103216808 G T TMSB15B 5'Flank 0.23 TCGA-C9-A47Z-01 X 103216895 103216895 T A TMSB15B 5'Flank 0.18 TCGA-C9-A47Z-01 X 123519782 123519782 G A TENM1 Missense_Mutation p.R1941W 0.24 deleterious(0) probably_damaging(0.982) TCGA-C9-A47Z-01 X 147582653 147582653 G C AFF2 Missense_Mutation p.L12F 0.12 deleterious(0.04) benign(0.133) TCGA-C9-A47Z-01 X 151393236 151393236 G T GABRA3 Missense_Mutation p.S211R 0.11 deleterious(0) probably_damaging(0.93) TCGA-C9-A47Z-01 X 154255150 154255150 G A FUNDC2 5'UTR 0.33 TCGA-C9-A47Z-01 X 30739058 30739058 G T GK Nonsense_Mutation p.E477* 0.17 TCGA-C9-A47Z-01 X 48683003 48683003 A T HDAC6 Missense_Mutation p.D1210V 0.23 deleterious(0) benign(0.125) TCGA-C9-A47Z-01 X 51150073 51150073 G A CXorf67 Missense_Mutation p.A69T 0.67 tolerated(0.27) probably_damaging(0.953) TCGA-C9-A47Z-01 X 51150457 51150457 C A CXorf67 Missense_Mutation p.Q197K 0.30 tolerated(0.77) benign(0.01) TCGA-C9-A47Z-01 X 51150458 51150458 A G CXorf67 Missense_Mutation p.Q197R 0.25 tolerated(1) benign(0.001) TCGA-C9-A47Z-01 X 79279642 79279642 C T TBX22 Missense_Mutation p.P146L 0.14 deleterious(0) probably_damaging(0.997) TCGA-C9-A47Z-01 X 96139780 96139780 T A RPA4 Missense_Mutation p.H157Q 0.18 deleterious(0) probably_damaging(0.992) TCGA-C9-A47Z-01 X 96139795 96139795 C A RPA4 Silent p.V162V 0.18 TCGA-C9-A47Z-01 X 99942202 99942202 C A SYTL4 Missense_Mutation p.G349V 0.14 deleterious(0) probably_damaging(1) TCGA-C9-A480-01 10 123892231 123892231 C T TACC2 Missense_Mutation p.T1894M 0.20 possibly_damaging(0.794) TCGA-C9-A480-01 10 135352412 135352412 A G CYP2E1 Missense_Mutation p.I476V 0.24 tolerated(0.25) benign(0.002) TCGA-C9-A480-01 11 118104191 118104191 C T MPZL3 Missense_Mutation p.R222H 0.08 tolerated(0.36) benign(0.005) TCGA-C9-A480-01 11 128680494 128680494 C T FLI1 Missense_Mutation p.R324W 0.36 deleterious(0) probably_damaging(1) TCGA-C9-A480-01 11 3988831 3988831 C G STIM1 Silent p.L63L 0.23 TCGA-C9-A480-01 11 55761533 55761533 G A OR5F1 Missense_Mutation p.S190F 0.18 deleterious(0.02) benign(0.25) TCGA-C9-A480-01 11 59271436 59271436 C G OR4D11 Missense_Mutation p.L130V 0.18 deleterious(0) probably_damaging(0.998) TCGA-C9-A480-01 12 10149469 10149469 C T CLEC1B Silent p.L138L 0.16 TCGA-C9-A480-01 12 116409989 116409989 G A MED13L Silent p.L1928L 0.39 TCGA-C9-A480-01 12 120572126 120572126 G A GCN1L1 Missense_Mutation p.S2429L 0.25 benign(0) TCGA-C9-A480-01 13 38154807 38154807 C G POSTN Missense_Mutation p.E474Q 0.19 deleterious(0.04) benign(0.116) TCGA-C9-A480-01 14 102508997 102508997 G T DYNC1H1 Missense_Mutation p.G4142V 0.15 possibly_damaging(0.876) TCGA-C9-A480-01 15 33905502 33905502 C T RYR3 Silent p.P761P 0.17 TCGA-C9-A480-01 15 75197010 75197010 C T FAM219B Missense_Mutation p.A142T 0.17 deleterious(0) possibly_damaging(0.801) TCGA-C9-A480-01 16 48396084 48396084 C T SIAH1 Missense_Mutation p.A117T 0.15 deleterious(0.02) possibly_damaging(0.477) TCGA-C9-A480-01 16 86612494 86612494 C T FOXL1 Silent p.I55I 0.25 TCGA-C9-A480-01 17 29111110 29111110 G A CRLF3 3'UTR 0.17 TCGA-C9-A480-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.29 deleterious(0) probably_damaging(1) TCGA-C9-A480-01 19 42839480 42839480 C T MEGF8 Silent p.L257L 0.12 TCGA-C9-A480-01 19 53960318 53960318 G A ZNF761 RNA 0.22 TCGA-C9-A480-01 19 55378031 55378031 G A KIR3DL2 Missense_Mutation p.V405I 0.23 tolerated(0.56) benign(0.252) TCGA-C9-A480-01 19 8615225 8615225 G A MYO1F Missense_Mutation p.A307V 0.25 deleterious(0) probably_damaging(0.969) TCGA-C9-A480-01 19 8976759 8976759 C A MUC16 Nonsense_Mutation p.E14103* 0.39 TCGA-C9-A480-01 1 115398176 115398176 G A SYCP1 Missense_Mutation p.D31N 0.24 tolerated(0.14) probably_damaging(0.941) TCGA-C9-A480-01 1 156622478 156622478 G A BCAN Missense_Mutation p.R579Q 0.19 tolerated(0.43) benign(0.007) TCGA-C9-A480-01 1 197390857 197390857 G T CRB1 Missense_Mutation p.M633I 0.15 tolerated(1) benign(0.002) TCGA-C9-A480-01 1 247712493 247712493 G T GCSAML 5'UTR 0.16 TCGA-C9-A480-01 1 24927452 24927452 C - NCMAP Frame_Shift_Del p.V36Lfs*13 0.14 TCGA-C9-A480-01 20 4771164 4771164 G A RASSF2 Missense_Mutation p.T157M 0.12 tolerated(0.08) possibly_damaging(0.488) TCGA-C9-A480-01 20 61512619 61512619 C T DIDO1 Silent p.A1563A 0.13 TCGA-C9-A480-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.57 deleterious(0) probably_damaging(0.999) TCGA-C9-A480-01 22 39883837 39883837 G T MGAT3 Missense_Mutation p.R162L 0.30 tolerated_low_confidence(0.17) benign(0.004) TCGA-C9-A480-01 2 197183646 197183646 C T HECW2 Silent p.V656V 0.12 TCGA-C9-A480-01 2 226447504 226447504 C T NYAP2 Silent p.Y457Y 0.21 TCGA-C9-A480-01 2 38298060 38298060 C A CYP1B1 Missense_Mutation p.Q479H 0.10 tolerated(0.1) benign(0.247) TCGA-C9-A480-01 2 55900087 55900087 G C PNPT1 Silent p.T269T 0.19 TCGA-C9-A480-01 2 80085218 80085218 G A CTNNA2 Silent p.A126A 0.22 TCGA-C9-A480-01 2 99182508 99182508 C T INPP4A Missense_Mutation p.R771W 0.20 deleterious(0) probably_damaging(0.961) TCGA-C9-A480-01 3 122545849 122545849 C T DIRC2 Missense_Mutation p.L214F 0.22 tolerated(0.65) benign(0.048) TCGA-C9-A480-01 3 126710286 126710286 A G PLXNA1 Silent p.T418T 0.11 TCGA-C9-A480-01 3 126915914 126915914 C A C3orf56 Missense_Mutation p.P129H 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-C9-A480-01 3 170588003 170588003 T A RPL22L1 5'UTR 0.14 TCGA-C9-A480-01 3 183774688 183774688 G A HTR3C Missense_Mutation p.G139S 0.17 tolerated(0.2) benign(0.192) TCGA-C9-A480-01 3 9976012 9976012 C T CRELD1 Intron 0.17 TCGA-C9-A480-01 4 76898824 76898824 C T SDAD1 Missense_Mutation p.R127H 0.18 deleterious(0) benign(0.093) TCGA-C9-A480-01 5 140209500 140209500 G A PCDHA6 Silent p.S608S 0.15 TCGA-C9-A480-01 5 140250305 140250305 G A PCDHA11 Silent p.A539A 0.14 TCGA-C9-A480-01 5 149360594 149360594 A C SLC26A2 Missense_Mutation p.K480Q 0.23 tolerated(0.34) probably_damaging(0.995) TCGA-C9-A480-01 5 161580183 161580183 G A GABRG2 Missense_Mutation p.G453S 0.19 tolerated(0.71) possibly_damaging(0.815) TCGA-C9-A480-01 5 172195950 172195950 G T DUSP1 Missense_Mutation p.Q307K 0.25 deleterious(0.03) benign(0.351) TCGA-C9-A480-01 5 179036470 179036470 G A RUFY1 Missense_Mutation p.D693N 0.20 tolerated(0.28) probably_damaging(0.997) TCGA-C9-A480-01 5 89689831 89689831 G T CETN3 3'UTR 0.19 TCGA-C9-A480-01 6 108068062 108068062 C T SCML4 Silent p.A106A 0.13 TCGA-C9-A480-01 6 144508360 144508361 GC - STX11 Frame_Shift_Del p.R201Gfs*153 0.18 TCGA-C9-A480-01 6 53385631 53385631 C T GCLC Missense_Mutation p.A131T 0.17 deleterious(0.04) possibly_damaging(0.579) TCGA-C9-A480-01 6 76751728 76751728 G A IMPG1 Silent p.F61F 0.21 TCGA-C9-A480-01 7 44152173 44152173 G A AEBP1 Missense_Mutation p.R745Q 0.22 deleterious(0.01) possibly_damaging(0.906) TCGA-C9-A480-01 7 50467748 50467748 G A IKZF1 Missense_Mutation p.R286H 0.29 tolerated(0.12) possibly_damaging(0.647) TCGA-C9-A480-01 7 95125141 95125141 C T ASB4 Missense_Mutation p.H87Y 0.17 tolerated(0.22) benign(0.015) TCGA-C9-A480-01 8 133141389 133141389 C T KCNQ3 3'UTR 0.15 TCGA-C9-A480-01 8 19683950 19683950 G T INTS10 Silent p.P340P 0.37 TCGA-C9-A480-01 8 57025928 57025928 G A MOS Missense_Mutation p.A205V 0.35 deleterious(0) probably_damaging(1) TCGA-C9-A480-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.30 TCGA-C9-A480-01 9 6620306 6620306 G A GLDC Silent p.I116I 0.24 TCGA-C9-A480-01 9 94809508 94809508 G A SPTLC1 Missense_Mutation p.P343S 0.10 deleterious(0.04) probably_damaging(1) TCGA-C9-A480-01 X 34150165 34150165 T G FAM47A Missense_Mutation p.L77F 0.23 tolerated(1) probably_damaging(0.975) TCGA-C9-A480-01 X 36162986 36162986 C T CHDC2 3'UTR 0.30 TCGA-CN-4723-01 10 105209672 105209672 G A CALHM2 Silent p.F9F 0.45 TCGA-CN-4723-01 10 118386480 118386480 G C PNLIPRP2 Missense_Mutation p.E146Q 0.47 tolerated(0.33) benign(0.235) TCGA-CN-4723-01 10 121436717 121436717 C T BAG3 Nonsense_Mutation p.Q551* 0.35 TCGA-CN-4723-01 10 12162209 12162209 G A DHTKD1 Silent p.Q867Q 0.40 TCGA-CN-4723-01 10 124800176 124800176 C G ACADSB Silent p.L166L 0.53 TCGA-CN-4723-01 10 126311954 126311954 C T FAM53B Missense_Mutation p.E376K 0.14 deleterious(0.02) possibly_damaging(0.475) TCGA-CN-4723-01 10 126681775 126681775 G A CTBP2 Silent p.I885I 0.40 TCGA-CN-4723-01 10 127806646 127806646 C G ADAM12 Missense_Mutation p.K191N 0.09 tolerated(0.37) benign(0) TCGA-CN-4723-01 10 131762066 131762066 G C EBF3 5'UTR 0.41 TCGA-CN-4723-01 10 133930805 133930805 C G JAKMIP3 Silent p.L120L 0.50 TCGA-CN-4723-01 10 135106655 135106655 C T TUBGCP2 Silent p.L332L 0.52 TCGA-CN-4723-01 10 135212703 135212703 G C MTG1 Silent p.G131G 0.51 TCGA-CN-4723-01 10 135345198 135345198 G C CYP2E1 Missense_Mutation p.R149S 0.44 deleterious(0) benign(0.025) TCGA-CN-4723-01 10 15115168 15115168 G A OLAH Silent p.E299E 0.35 TCGA-CN-4723-01 10 17747604 17747604 C G STAM Nonsense_Mutation p.S358* 0.04 TCGA-CN-4723-01 10 23326482 23326482 G C ARMC3 3'UTR 0.31 TCGA-CN-4723-01 10 24835129 24835129 C T KIAA1217 Missense_Mutation p.S1903F 0.37 deleterious(0) possibly_damaging(0.596) TCGA-CN-4723-01 10 34649066 34649066 G C PARD3 Nonsense_Mutation p.S610* 0.25 TCGA-CN-4723-01 10 43650991 43650991 G C CSGALNACT2 Missense_Mutation p.E132Q 0.41 deleterious(0) probably_damaging(0.968) TCGA-CN-4723-01 10 45498928 45498928 C T ZNF22 Nonsense_Mutation p.R38* 0.45 TCGA-CN-4723-01 10 64968002 64968002 G C JMJD1C Missense_Mutation p.L1143V 0.02 deleterious(0) probably_damaging(0.997) TCGA-CN-4723-01 10 70646010 70646010 G A STOX1 Missense_Mutation p.E820K 0.47 tolerated(0.06) possibly_damaging(0.451) TCGA-CN-4723-01 10 7262467 7262467 C T SFMBT2 Missense_Mutation p.M412I 0.35 deleterious(0) probably_damaging(0.995) TCGA-CN-4723-01 10 83635424 83635424 C A NRG3 Missense_Mutation p.Q110K 0.37 deleterious(0) probably_damaging(0.954) TCGA-CN-4723-01 10 89624268 89624268 G T PTEN Missense_Mutation p.R14S 0.51 deleterious(0.02) benign(0.066) TCGA-CN-4723-01 10 95372755 95372755 C G PDE6C Silent p.L91L 0.42 TCGA-CN-4723-01 10 97759891 97759891 C T CC2D2B 5'UTR 0.46 TCGA-CN-4723-01 11 103908514 103908514 G A DDI1 Missense_Mutation p.E322K 0.22 deleterious(0.05) benign(0.204) TCGA-CN-4723-01 11 110007313 110007313 C G ZC3H12C Intron 0.26 TCGA-CN-4723-01 11 113563881 113563881 C G TMPRSS5 Missense_Mutation p.E292D 0.40 deleterious(0.04) benign(0.049) TCGA-CN-4723-01 11 113816676 113816676 C T HTR3B Silent p.V381V 0.28 TCGA-CN-4723-01 11 116730264 116730264 G A SIK3 Nonsense_Mutation p.Q722* 0.22 TCGA-CN-4723-01 11 117098989 117098989 C T PCSK7 Silent p.T182T 0.36 TCGA-CN-4723-01 11 118210614 118210614 C G CD3D Missense_Mutation p.Q94H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 11 118499169 118499169 C T PHLDB1 Silent p.L544L 0.31 TCGA-CN-4723-01 11 118971068 118971069 - A DPAGT1 Frame_Shift_Ins p.A183Cfs*9 0.23 TCGA-CN-4723-01 11 119185721 119185721 G A MCAM Silent p.F74F 0.26 TCGA-CN-4723-01 11 119290099 119290099 C T THY1 3'UTR 0.20 TCGA-CN-4723-01 11 121403170 121403170 C T SORL1 Intron 0.22 TCGA-CN-4723-01 11 12183923 12183923 C T MICAL2 Missense_Mutation p.S74F 0.16 deleterious(0) possibly_damaging(0.574) TCGA-CN-4723-01 11 123886582 123886582 T A OR10G4 Missense_Mutation p.Y101N 0.22 deleterious(0) probably_damaging(0.966) TCGA-CN-4723-01 11 124621364 124621364 C G VSIG2 Missense_Mutation p.E58D 0.23 tolerated(0.11) benign(0.441) TCGA-CN-4723-01 11 125830980 125830980 C A CDON Nonsense_Mutation p.E1241* 0.26 TCGA-CN-4723-01 11 134182365 134182365 C T GLB1L3 Silent p.H470H 0.23 TCGA-CN-4723-01 11 1774754 1774754 G A CTSD Silent p.F406F 0.23 TCGA-CN-4723-01 11 18318449 18318449 G C HPS5 Missense_Mutation p.S469C 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-4723-01 11 18655767 18655767 C G SPTY2D1 Missense_Mutation p.G13A 0.20 tolerated(0.24) benign(0) TCGA-CN-4723-01 11 18955404 18955404 C G MRGPRX1 Missense_Mutation p.E310Q 0.32 tolerated(1) benign(0.001) TCGA-CN-4723-01 11 18956074 18956074 G T MRGPRX1 Missense_Mutation p.S86R 0.25 tolerated(0.66) benign(0.008) TCGA-CN-4723-01 11 20658825 20658825 C G SLC6A5 Missense_Mutation p.I615M 0.27 deleterious(0.01) possibly_damaging(0.675) TCGA-CN-4723-01 11 26700349 26700349 C T SLC5A12 Missense_Mutation p.D497N 0.24 deleterious(0.02) possibly_damaging(0.697) TCGA-CN-4723-01 11 28045380 28045380 G A KIF18A Missense_Mutation p.S841L 0.23 tolerated(0.27) benign(0.002) TCGA-CN-4723-01 11 30033388 30033388 C T KCNA4 Missense_Mutation p.E280K 0.24 tolerated(0.05) benign(0.217) TCGA-CN-4723-01 11 31312293 31312293 C T DCDC1 Silent p.K287K 0.29 TCGA-CN-4723-01 11 32676499 32676499 G C CCDC73 Nonsense_Mutation p.S222* 0.25 TCGA-CN-4723-01 11 3380304 3380304 G A ZNF195 3'UTR 0.26 TCGA-CN-4723-01 11 407115 407115 G A SIGIRR Silent p.I225I 0.26 TCGA-CN-4723-01 11 4132854 4132854 G T RRM1 Missense_Mutation p.L157F 0.27 deleterious_low_confidence(0.04) benign(0.342) TCGA-CN-4723-01 11 45241142 45241142 G C PRDM11 Missense_Mutation p.E192D 0.28 tolerated(0.43) benign(0.012) TCGA-CN-4723-01 11 46801864 46801864 C G CKAP5 Silent p.V771V 0.20 TCGA-CN-4723-01 11 47176813 47176813 G A C11orf49 Splice_Site p.X151_splice 0.23 TCGA-CN-4723-01 11 47684621 47684621 G A AGBL2 Missense_Mutation p.S831L 0.25 deleterious_low_confidence(0.02) benign(0.118) TCGA-CN-4723-01 11 47819408 47819408 C G NUP160 Missense_Mutation p.R1071T 0.20 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 11 500607 500607 G C RNH1 Missense_Mutation p.S50C 0.24 deleterious(0) possibly_damaging(0.869) TCGA-CN-4723-01 11 5142422 5142422 C T OR52A4 RNA 0.33 TCGA-CN-4723-01 11 55135371 55135371 G A OR4A15 Silent p.L4L 0.24 TCGA-CN-4723-01 11 55579557 55579557 G A OR5L1 Silent p.L205L 0.23 TCGA-CN-4723-01 11 55659078 55659078 C T TRIM51 Silent p.L443L 0.16 TCGA-CN-4723-01 11 558713 558713 C T C11orf35 Missense_Mutation p.R71Q 0.56 deleterious(0.03) probably_damaging(0.994) TCGA-CN-4723-01 11 55872928 55872928 C T OR8H2 Missense_Mutation p.S137F 0.29 deleterious(0) possibly_damaging(0.528) TCGA-CN-4723-01 11 57080763 57080763 C G TNKS1BP1 Missense_Mutation p.E467Q 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-CN-4723-01 11 57982933 57982933 G A OR1S1 Silent p.L239L 0.34 TCGA-CN-4723-01 11 62364201 62364201 C A MTA2 Nonsense_Mutation p.E264* 0.33 TCGA-CN-4723-01 11 62444320 62444320 G C UBXN1 Nonsense_Mutation p.S270* 0.24 TCGA-CN-4723-01 11 63072312 63072312 G C SLC22A10 Missense_Mutation p.E517Q 0.20 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 11 64323848 64323848 C G SLC22A11 Missense_Mutation p.S126C 0.29 deleterious(0) probably_damaging(0.988) TCGA-CN-4723-01 11 64853913 64853913 G A ZFPL1 Missense_Mutation p.E81K 0.27 tolerated(0.33) benign(0.009) TCGA-CN-4723-01 11 6587845 6587845 G C DNHD1 Silent p.L3745L 0.25 TCGA-CN-4723-01 11 66985207 66985207 C T KDM2A Silent p.F231F 0.19 TCGA-CN-4723-01 11 68575046 68575046 C G CPT1A Silent p.L114L 0.17 TCGA-CN-4723-01 11 6867662 6867662 C G OR10A5 Missense_Mutation p.S250C 0.24 deleterious(0.02) benign(0.169) TCGA-CN-4723-01 11 691546 691546 G A DEAF1 Silent p.F114F 0.27 TCGA-CN-4723-01 11 70130127 70130128 - A PPFIA1 Intron 0.27 TCGA-CN-4723-01 11 70253636 70253636 G A CTTN Missense_Mutation p.E34K 0.20 tolerated(0.06) probably_damaging(0.991) TCGA-CN-4723-01 11 7111102 7111102 G A RBMXL2 Missense_Mutation p.D251N 0.24 deleterious(0.01) benign(0.008) TCGA-CN-4723-01 11 72712082 72712082 C G FCHSD2 Missense_Mutation p.E114Q 0.21 tolerated(0.06) possibly_damaging(0.731) TCGA-CN-4723-01 11 74873772 74873772 G A SLCO2B1 Missense_Mutation p.G30E 0.31 tolerated(0.22) benign(0.015) TCGA-CN-4723-01 11 76062412 76062412 G A PRKRIR Silent p.F594F 0.27 TCGA-CN-4723-01 11 77378293 77378293 G C RSF1 Nonsense_Mutation p.S1332* 0.29 TCGA-CN-4723-01 11 77884871 77884871 G A KCTD21 Missense_Mutation p.H244Y 0.21 deleterious(0.01) benign(0.018) TCGA-CN-4723-01 11 85436774 85436774 C T SYTL2 Silent p.L242L 0.23 TCGA-CN-4723-01 11 86160950 86160950 G C ME3 Missense_Mutation p.S371C 0.31 deleterious(0.01) possibly_damaging(0.762) TCGA-CN-4723-01 11 93127665 93127665 C G CCDC67 Missense_Mutation p.S361C 0.42 deleterious(0.01) benign(0.105) TCGA-CN-4723-01 11 93523943 93523943 G A MED17 Silent p.L207L 0.18 TCGA-CN-4723-01 11 99786823 99786823 C T CNTN5 Silent p.V205V 0.28 TCGA-CN-4723-01 12 101767494 101767494 G C UTP20 Missense_Mutation p.E2360D 0.33 tolerated(0.36) benign(0.008) TCGA-CN-4723-01 12 102036216 102036216 G A MYBPC1 Missense_Mutation p.E204K 0.23 tolerated(0.41) benign(0.081) TCGA-CN-4723-01 12 102439861 102439861 C G CCDC53 Missense_Mutation p.E63Q 0.19 deleterious(0) probably_damaging(0.967) TCGA-CN-4723-01 12 10251525 10251525 G C CLEC1A 5'UTR 0.50 TCGA-CN-4723-01 12 102572517 102572517 C T PARPBP Missense_Mutation p.H385Y 0.26 tolerated(1) benign(0.004) TCGA-CN-4723-01 12 10783759 10783759 T C STYK1 Silent p.Q112Q 0.22 TCGA-CN-4723-01 12 10959018 10959018 G T TAS2R8 Missense_Mutation p.L188M 0.19 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 12 10959027 10959027 G C TAS2R8 Missense_Mutation p.L185V 0.18 tolerated(0.14) benign(0.223) TCGA-CN-4723-01 12 10959148 10959148 G C TAS2R8 Silent p.V144V 0.18 TCGA-CN-4723-01 12 111082789 111082789 C T TCTN1 Missense_Mutation p.P450L 0.23 tolerated(0.12) benign(0.056) TCGA-CN-4723-01 12 111099112 111099112 C T HVCN1 Missense_Mutation p.E55K 0.26 tolerated(0.14) benign(0.146) TCGA-CN-4723-01 12 111885521 111885521 C T SH2B3 Missense_Mutation p.S433L 0.28 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 12 112140045 112140045 G A ACAD10 Missense_Mutation p.M89I 0.30 tolerated(0.15) benign(0.061) TCGA-CN-4723-01 12 112711540 112711540 G A HECTD4 Nonsense_Mutation p.Q477* 0.28 TCGA-CN-4723-01 12 114837439 114837439 T G TBX5 Splice_Site p.X81_splice 0.24 TCGA-CN-4723-01 12 118473077 118473077 G T WSB2 Missense_Mutation p.L296M 0.29 tolerated(0.16) possibly_damaging(0.798) TCGA-CN-4723-01 12 119631770 119631770 G A HSPB8 3'UTR 0.23 TCGA-CN-4723-01 12 120111803 120111803 G C PRKAB1 Missense_Mutation p.E120Q 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-CN-4723-01 12 121469368 121469368 G C OASL Missense_Mutation p.I178M 0.34 deleterious(0) probably_damaging(0.988) TCGA-CN-4723-01 12 12291889 12291889 G C LRP6 Intron 0.38 TCGA-CN-4723-01 12 124421547 124421547 G C CCDC92 3'UTR 0.32 TCGA-CN-4723-01 12 125449160 125449160 G A DHX37 Missense_Mutation p.P609S 0.24 tolerated(0.05) probably_damaging(0.954) TCGA-CN-4723-01 12 126136994 126136994 C T TMEM132B Missense_Mutation p.S636L 0.32 deleterious(0.04) possibly_damaging(0.614) TCGA-CN-4723-01 12 14769618 14769618 C G GUCY2C Missense_Mutation p.K973N 0.25 deleterious(0.02) benign(0.411) TCGA-CN-4723-01 12 1943843 1943843 G T LRTM2 Nonsense_Mutation p.E357* 0.29 TCGA-CN-4723-01 12 1993931 1993931 C T CACNA2D4 Intron 0.32 TCGA-CN-4723-01 12 21054307 21054307 T G SLCO1B3 Missense_Mutation p.F591V 0.29 deleterious(0.03) possibly_damaging(0.718) TCGA-CN-4723-01 12 25267694 25267694 G C CASC1 Missense_Mutation p.H503D 0.26 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 12 2774834 2774834 G C CACNA1C Missense_Mutation p.E1544Q 0.33 deleterious(0.03) probably_damaging(0.988) TCGA-CN-4723-01 12 2907035 2907035 G C FKBP4 Missense_Mutation p.E131Q 0.24 tolerated(0.07) benign(0.378) TCGA-CN-4723-01 12 2997289 2997289 C G RHNO1 Silent p.P127P 0.21 TCGA-CN-4723-01 12 31237969 31237969 G A DDX11 Missense_Mutation p.E183K 0.28 tolerated(0.81) benign(0.038) TCGA-CN-4723-01 12 33592455 33592455 C T SYT10 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-CN-4723-01 12 39713804 39713804 G C KIF21A Nonsense_Mutation p.S1228* 0.17 TCGA-CN-4723-01 12 41966788 41966788 C T PDZRN4 Missense_Mutation p.S736F 0.23 deleterious(0) probably_damaging(0.998) TCGA-CN-4723-01 12 4705759 4705759 C A DYRK4 Missense_Mutation p.H142N 0.33 deleterious(0) probably_damaging(0.977) TCGA-CN-4723-01 12 4737844 4737844 C G AKAP3 Missense_Mutation p.G75A 0.32 tolerated(0.12) benign(0.063) TCGA-CN-4723-01 12 49391866 49391866 C T DDN Missense_Mutation p.D265N 0.24 deleterious_low_confidence(0) benign(0.031) TCGA-CN-4723-01 12 49942877 49942877 C T KCNH3 Silent p.L463L 0.31 TCGA-CN-4723-01 12 50570635 50570635 G C LIMA1 3'UTR 0.25 TCGA-CN-4723-01 12 51116990 51116990 G C DIP2B Missense_Mutation p.E1058Q 0.22 deleterious(0) possibly_damaging(0.465) TCGA-CN-4723-01 12 51890879 51890879 G A SLC4A8 Missense_Mutation p.D1018N 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-CN-4723-01 12 54448756 54448756 G A HOXC4 Missense_Mutation p.E188K 0.31 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 12 55524495 55524495 C G OR9K2 Missense_Mutation p.L315V 0.28 deleterious(0.01) benign(0.242) TCGA-CN-4723-01 12 55726127 55726127 T C OR6C3 Missense_Mutation p.Y215H 0.28 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CN-4723-01 12 56495415 56495415 G A ERBB3 Missense_Mutation p.R1202Q 0.29 tolerated(0.11) benign(0.001) TCGA-CN-4723-01 12 56495416 56495416 G C ERBB3 Silent p.R1202R 0.28 TCGA-CN-4723-01 12 56708549 56708549 C G CNPY2 Intron 0.32 TCGA-CN-4723-01 12 57601825 57601825 C T LRP1 Missense_Mutation p.S3955L 0.31 benign(0.159) TCGA-CN-4723-01 12 64818849 64818849 G T XPOT Nonsense_Mutation p.E447* 0.29 TCGA-CN-4723-01 12 6730415 6730415 C T LPAR5 5'UTR 0.28 TCGA-CN-4723-01 12 6952355 6952355 C A GNB3 Nonsense_Mutation p.S74* 0.23 TCGA-CN-4723-01 12 77216299 77216299 G A ZDHHC17 Silent p.L295L 0.25 TCGA-CN-4723-01 12 80239130 80239130 C G PPP1R12A Missense_Mutation p.E147Q 0.27 deleterious(0.05) probably_damaging(0.974) TCGA-CN-4723-01 12 80717543 80717543 G C OTOGL Missense_Mutation p.W1365C 0.23 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 12 85450043 85450043 G C LRRIQ1 Missense_Mutation p.R491P 0.20 deleterious(0) benign(0.061) TCGA-CN-4723-01 12 8906664 8906664 G C RIMKLB Silent p.G224G 0.25 TCGA-CN-4723-01 12 9227270 9227270 G C A2M Silent p.L1214L 0.24 TCGA-CN-4723-01 12 9251338 9251338 G C A2M Missense_Mutation p.F572L 0.16 deleterious(0) probably_damaging(0.978) TCGA-CN-4723-01 12 95927813 95927813 C T USP44 Missense_Mutation p.E74K 0.28 deleterious(0.01) possibly_damaging(0.9) TCGA-CN-4723-01 12 96348697 96348697 G A AMDHD1 Missense_Mutation p.D85N 0.25 deleterious(0.02) possibly_damaging(0.738) TCGA-CN-4723-01 12 9751250 9751250 C G KLRB1 Splice_Site p.X87_splice 0.30 TCGA-CN-4723-01 12 9847572 9847572 G C CLEC2D 3'UTR 0.44 TCGA-CN-4723-01 12 99077046 99077046 C A APAF1 Missense_Mutation p.F724L 0.25 tolerated(0.62) benign(0.004) TCGA-CN-4723-01 13 109438029 109438029 T C MYO16 Missense_Mutation p.L163S 0.11 deleterious(0.03) probably_damaging(0.978) TCGA-CN-4723-01 13 109496836 109496836 G A MYO16 Missense_Mutation p.E393K 0.22 deleterious(0.02) possibly_damaging(0.901) TCGA-CN-4723-01 13 21565498 21565498 C T LATS2 Missense_Mutation p.E130K 0.18 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-CN-4723-01 13 21729931 21729931 G C SKA3 Nonsense_Mutation p.S380* 0.18 TCGA-CN-4723-01 13 25374667 25374667 A C RNF17 Missense_Mutation p.N585H 0.04 deleterious(0.04) benign(0.205) TCGA-CN-4723-01 13 25448363 25448363 C A RNF17 Nonsense_Mutation p.S1520* 0.16 TCGA-CN-4723-01 13 29286950 29286950 C G SLC46A3 Missense_Mutation p.L309F 0.26 tolerated(0.13) benign(0.007) TCGA-CN-4723-01 13 29287679 29287679 C G SLC46A3 Missense_Mutation p.Q66H 0.27 deleterious(0) probably_damaging(0.998) TCGA-CN-4723-01 13 30854258 30854258 G C KATNAL1 Missense_Mutation p.Q89E 0.26 tolerated(0.77) benign(0.013) TCGA-CN-4723-01 13 32776558 32776558 C G FRY Silent p.L1304L 0.08 TCGA-CN-4723-01 13 34392272 34392272 C G RFC3 5'UTR 0.41 TCGA-CN-4723-01 13 38153456 38153456 C T POSTN Silent p.L567L 0.06 TCGA-CN-4723-01 13 42393495 42393495 G A VWA8 Silent p.F576F 0.24 TCGA-CN-4723-01 13 42872840 42872840 G A AKAP11 Missense_Mutation p.D175N 0.25 deleterious(0.02) probably_damaging(1) TCGA-CN-4723-01 13 45008721 45008721 C G TSC22D1 3'UTR 0.24 TCGA-CN-4723-01 13 45008797 45008797 G T TSC22D1 Missense_Mutation p.Q1063K 0.15 deleterious_low_confidence(0.04) unknown(0) TCGA-CN-4723-01 13 45008999 45008999 C T TSC22D1 Silent p.L995L 0.23 TCGA-CN-4723-01 13 45149590 45149590 C G TSC22D1 Missense_Mutation p.Q207H 0.21 tolerated(0.07) probably_damaging(0.993) TCGA-CN-4723-01 13 47409577 47409577 C G HTR2A Missense_Mutation p.D271H 0.28 tolerated(0.09) possibly_damaging(0.55) TCGA-CN-4723-01 13 49884943 49884943 G C CAB39L 3'UTR 0.10 TCGA-CN-4723-01 13 50489231 50489231 C G SPRYD7 Missense_Mutation p.E187Q 0.15 tolerated(0.09) benign(0.024) TCGA-CN-4723-01 13 52348132 52348132 C T DHRS12 Silent p.L183L 0.24 TCGA-CN-4723-01 13 79190259 79190259 G A RNF219 Missense_Mutation p.S546L 0.19 deleterious(0) probably_damaging(0.996) TCGA-CN-4723-01 13 88329668 88329668 C G SLITRK5 Missense_Mutation p.I675M 0.16 deleterious(0) probably_damaging(0.984) TCGA-CN-4723-01 13 96485261 96485261 C G UGGT2 Missense_Mutation p.R1483T 0.21 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 13 96743704 96743704 C G HS6ST3 Silent p.L196L 0.20 TCGA-CN-4723-01 13 99549807 99549807 G C DOCK9 Missense_Mutation p.I548M 0.17 deleterious(0.01) benign(0.065) TCGA-CN-4723-01 14 101004323 101004323 C T BEGAIN Missense_Mutation p.G589R 0.37 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 14 106173649 106173649 C T IGHA1 Silent p.K306K 0.37 TCGA-CN-4723-01 14 106829777 106829777 C G IGHV4-34 Missense_Mutation p.W62C 0.55 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 14 20711066 20711066 C T OR11H4 Missense_Mutation p.S39L 0.14 tolerated(0.87) benign(0.008) TCGA-CN-4723-01 14 20781915 20781915 C G CCNB1IP1 Missense_Mutation p.E115Q 0.59 tolerated(0.3) benign(0.037) TCGA-CN-4723-01 14 23882971 23882971 C G MYH7 Silent p.T1929T 0.58 TCGA-CN-4723-01 14 24614473 24614473 C G PSME2 Missense_Mutation p.D81H 0.04 deleterious(0.02) possibly_damaging(0.834) TCGA-CN-4723-01 14 31917330 31917330 C T DTD2 3'UTR 0.53 TCGA-CN-4723-01 14 33290655 33290655 G A AKAP6 Missense_Mutation p.M1212I 0.54 tolerated(0.71) benign(0.05) TCGA-CN-4723-01 14 33291388 33291388 G A AKAP6 Missense_Mutation p.E1457K 0.56 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-CN-4723-01 14 35181967 35181967 G A CFL2 3'UTR 0.56 TCGA-CN-4723-01 14 38678632 38678632 C G SSTR1 Missense_Mutation p.S13C 0.67 deleterious_low_confidence(0.02) unknown(0) TCGA-CN-4723-01 14 45605218 45605218 C T FANCM 5'UTR 0.51 TCGA-CN-4723-01 14 47120418 47120418 C T RPL10L Silent p.T174T 0.56 TCGA-CN-4723-01 14 50584987 50584987 T C SOS2 3'UTR 0.64 TCGA-CN-4723-01 14 52182162 52182162 C G FRMD6 Silent p.L323L 0.61 TCGA-CN-4723-01 14 57052606 57052606 C G TMEM260 Nonsense_Mutation p.S107* 0.51 TCGA-CN-4723-01 14 60619717 60619717 G A DHRS7 Silent p.I191I 0.53 TCGA-CN-4723-01 14 64669652 64669652 G C SYNE2 Missense_Mutation p.E6058Q 0.52 probably_damaging(0.999) TCGA-CN-4723-01 14 67784156 67784156 G C MPP5 Missense_Mutation p.K443N 0.55 tolerated(0.06) possibly_damaging(0.698) TCGA-CN-4723-01 14 68043190 68043190 G T PLEKHH1 Nonsense_Mutation p.G811* 0.54 TCGA-CN-4723-01 14 73137905 73137905 G A DPF3 Missense_Mutation p.S338F 0.60 tolerated_low_confidence(0.08) unknown(0) TCGA-CN-4723-01 14 74125577 74125577 G T DNAL1 Nonsense_Mutation p.E24* 0.61 TCGA-CN-4723-01 14 77269772 77269772 G A ANGEL1 Silent p.I520I 0.58 TCGA-CN-4723-01 14 78374175 78374175 G A ADCK1 Silent p.T257T 0.52 TCGA-CN-4723-01 14 91123528 91123528 G A TTC7B Missense_Mutation p.S444F 0.59 tolerated(0.17) benign(0.004) TCGA-CN-4723-01 14 94084637 94084637 G A UNC79 Missense_Mutation p.A1265T 0.61 tolerated(0.09) probably_damaging(0.998) TCGA-CN-4723-01 14 94526564 94526564 G A DDX24 Missense_Mutation p.S598F 0.61 deleterious(0) possibly_damaging(0.723) TCGA-CN-4723-01 14 95235376 95235376 G A GSC Silent p.L178L 0.47 TCGA-CN-4723-01 14 96000110 96000110 C G GLRX5 5'Flank 0.55 TCGA-CN-4723-01 14 96848583 96848583 G A GSKIP Splice_Site 0.52 TCGA-CN-4723-01 15 102264441 102264441 G C TARSL2 Silent p.L50L 0.38 TCGA-CN-4723-01 15 22993080 22993080 G A CYFIP1 Silent p.L989L 0.29 TCGA-CN-4723-01 15 24924415 24924415 A G NPAP1 Missense_Mutation p.Y1134C 0.24 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-CN-4723-01 15 25223557 25223557 C T SNRPN Missense_Mutation p.P230L 0.22 deleterious_low_confidence(0) unknown(0) TCGA-CN-4723-01 15 25304817 25304817 G A SNORD116-3 3'Flank 0.17 TCGA-CN-4723-01 15 25474009 25474009 G - SNORD115-33 5'Flank 0.24 TCGA-CN-4723-01 15 41107840 41107840 G C PPP1R14D 3'UTR 0.17 TCGA-CN-4723-01 15 43699588 43699588 G A TP53BP1 Missense_Mutation p.S1976F 0.27 deleterious(0) probably_damaging(0.926) TCGA-CN-4723-01 15 43815427 43815427 G A MAP1A Missense_Mutation p.E586K 0.32 possibly_damaging(0.447) TCGA-CN-4723-01 15 43932522 43932522 C T CATSPER2 Silent p.L187L 0.17 TCGA-CN-4723-01 15 44058971 44058971 C G PDIA3 Silent p.L297L 0.27 TCGA-CN-4723-01 15 44097192 44097192 C G MFAP1 3'UTR 0.26 TCGA-CN-4723-01 15 44878014 44878014 C G SPG11 Missense_Mutation p.Q1647H 0.19 tolerated(0.07) benign(0.134) TCGA-CN-4723-01 15 45426095 45426095 G A DUOX1 Missense_Mutation p.R31Q 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-CN-4723-01 15 53081966 53081966 G C ONECUT1 Missense_Mutation p.A39G 0.40 tolerated(0.3) benign(0.002) TCGA-CN-4723-01 15 55653003 55653003 G A CCPG1 Missense_Mutation p.S323L 0.21 tolerated(0.48) benign(0.018) TCGA-CN-4723-01 15 58465363 58465363 G C AQP9 Missense_Mutation p.G112A 0.21 tolerated(0.07) probably_damaging(1) TCGA-CN-4723-01 15 65489713 65489713 G A CILP Missense_Mutation p.R971C 0.19 deleterious(0) probably_damaging(0.997) TCGA-CN-4723-01 15 65499133 65499133 G A CILP Silent p.F137F 0.29 TCGA-CN-4723-01 15 71535271 71535271 G C THSD4 Missense_Mutation p.D250H 0.17 tolerated(0.16) possibly_damaging(0.525) TCGA-CN-4723-01 15 72170385 72170385 G A MYO9A Missense_Mutation p.T1976I 0.27 tolerated(0.12) benign(0.004) TCGA-CN-4723-01 15 72582346 72582346 C T CELF6 Silent p.V179V 0.23 TCGA-CN-4723-01 15 72642812 72642812 C G HEXA Intron 0.21 TCGA-CN-4723-01 15 75189514 75189514 C G MPI Nonsense_Mutation p.S336* 0.35 TCGA-CN-4723-01 15 75668138 75668138 C T SIN3A Silent p.K1153K 0.22 TCGA-CN-4723-01 15 81295691 81295691 C G MESDC1 Missense_Mutation p.S360C 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CN-4723-01 15 85360149 85360149 G T ALPK3 Silent p.R24R 0.14 TCGA-CN-4723-01 15 91488219 91488219 C T UNC45A Silent p.L375L 0.25 TCGA-CN-4723-01 16 1261954 1261954 G C CACNA1H Missense_Mutation p.Q1525H 0.25 tolerated(0.11) probably_damaging(0.917) TCGA-CN-4723-01 16 14755859 14755859 C T BFAR Silent p.F298F 0.27 TCGA-CN-4723-01 16 15100328 15100328 C T PDXDC1 Missense_Mutation p.S156F 0.14 deleterious(0.01) possibly_damaging(0.797) TCGA-CN-4723-01 16 19087180 19087180 C T COQ7 Nonsense_Mutation p.Q169* 0.24 TCGA-CN-4723-01 16 20570614 20570614 C G ACSM2B Silent p.V111V 0.27 TCGA-CN-4723-01 16 20944735 20944735 G A DNAH3 Missense_Mutation p.T4031M 0.28 tolerated(0.11) benign(0.034) TCGA-CN-4723-01 16 20975168 20975168 G C DNAH3 Missense_Mutation p.I3346M 0.23 tolerated(0.06) possibly_damaging(0.542) TCGA-CN-4723-01 16 2222339 2222339 G A TRAF7 Missense_Mutation p.R208Q 0.19 tolerated(0.6) benign(0.001) TCGA-CN-4723-01 16 2239055 2239055 G T CASKIN1 Missense_Mutation p.A197D 0.17 probably_damaging(1) TCGA-CN-4723-01 16 2339481 2339481 C A ABCA3 Missense_Mutation p.G885V 0.22 deleterious(0.03) benign(0.017) TCGA-CN-4723-01 16 23706664 23706664 C G ERN2 Missense_Mutation p.E601Q 0.29 deleterious(0.01) possibly_damaging(0.746) TCGA-CN-4723-01 16 24958901 24958901 G T ARHGAP17 Missense_Mutation p.F381L 0.17 deleterious(0) probably_damaging(0.986) TCGA-CN-4723-01 16 25251184 25251184 C T ZKSCAN2 Missense_Mutation p.E953K 0.23 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-CN-4723-01 16 26147555 26147555 G C HS3ST4 Missense_Mutation p.E453Q 0.23 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-CN-4723-01 16 2814163 2814163 G C SRRM2 Missense_Mutation p.E1212Q 0.31 unknown(0) TCGA-CN-4723-01 16 28943860 28943860 C A CD19 Missense_Mutation p.F94L 0.14 deleterious(0) benign(0.012) TCGA-CN-4723-01 16 30081609 30081609 C T ALDOA 3'UTR 0.27 TCGA-CN-4723-01 16 30123849 30123849 G C GDPD3 Missense_Mutation p.S120C 0.25 tolerated(0.18) probably_damaging(0.99) TCGA-CN-4723-01 16 30712176 30712176 C T SRCAP Nonsense_Mutation p.Q11* 0.20 TCGA-CN-4723-01 16 31332559 31332559 C T ITGAM Intron 0.25 TCGA-CN-4723-01 16 31342510 31342510 G T ITGAM Nonsense_Mutation p.E1102* 0.27 TCGA-CN-4723-01 16 3451983 3451983 G C ZNF174 5'UTR 0.24 TCGA-CN-4723-01 16 4310485 4310485 C T TFAP4 Missense_Mutation p.E213K 0.30 tolerated(0.12) unknown(0) TCGA-CN-4723-01 16 46763019 46763019 G A MYLK3 Silent p.I563I 0.26 TCGA-CN-4723-01 16 47488014 47488014 G A ITFG1 Nonsense_Mutation p.Q113* 0.19 TCGA-CN-4723-01 16 4797506 4797506 C G C16orf71 Silent p.L481L 0.36 TCGA-CN-4723-01 16 48596001 48596001 C G N4BP1 Missense_Mutation p.E185Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 16 48596101 48596101 C T N4BP1 Silent p.Q151Q 0.20 TCGA-CN-4723-01 16 4940880 4940880 C T PPL Missense_Mutation p.E671K 0.40 tolerated(0.25) benign(0.26) TCGA-CN-4723-01 16 4944472 4944472 C G PPL Missense_Mutation p.D464H 0.31 deleterious(0.04) benign(0.076) TCGA-CN-4723-01 16 50783939 50783939 C A CYLD Missense_Mutation p.F110L 0.26 tolerated(1) benign(0) TCGA-CN-4723-01 16 55899899 55899899 C T CES5A Silent p.A256A 0.21 TCGA-CN-4723-01 16 56996944 56996944 G C CETP Silent p.V47V 0.18 TCGA-CN-4723-01 16 67261034 67261034 G C TMEM208 5'UTR 0.29 TCGA-CN-4723-01 16 67760383 67760383 C T RANBP10 Missense_Mutation p.R604Q 0.12 tolerated(0.28) probably_damaging(0.978) TCGA-CN-4723-01 16 682690 682690 G A WFIKKN1 Missense_Mutation p.E94K 0.20 tolerated(0.07) benign(0.008) TCGA-CN-4723-01 16 70211291 70211291 G C CLEC18C Missense_Mutation p.E122Q 0.19 tolerated(0.31) benign(0.015) TCGA-CN-4723-01 16 71054110 71054110 C T HYDIN Silent p.E1099E 0.24 TCGA-CN-4723-01 16 71054112 71054112 C T HYDIN Missense_Mutation p.E1099K 0.27 benign(0.058) TCGA-CN-4723-01 16 71418697 71418697 G A CALB2 Silent p.L195L 0.27 TCGA-CN-4723-01 16 74516954 74516954 A G GLG1 Missense_Mutation p.L547S 0.27 deleterious(0.02) possibly_damaging(0.891) TCGA-CN-4723-01 16 74657730 74657730 G C RFWD3 3'UTR 0.33 TCGA-CN-4723-01 16 77859251 77859251 G A VAT1L Missense_Mutation p.A158T 0.21 deleterious(0) possibly_damaging(0.838) TCGA-CN-4723-01 16 84125404 84125404 T C MBTPS1 Missense_Mutation p.K299R 0.15 tolerated(0.47) benign(0.267) TCGA-CN-4723-01 17 10209920 10209920 C G MYH13 Missense_Mutation p.K1774N 0.30 deleterious(0) probably_damaging(0.997) TCGA-CN-4723-01 17 10415430 10415430 G A MYH1 Silent p.V409V 0.30 TCGA-CN-4723-01 17 10428570 10428570 C G MYH2 Missense_Mutation p.E1545Q 0.18 deleterious(0.02) possibly_damaging(0.878) TCGA-CN-4723-01 17 10441071 10441071 C G MYH2 Missense_Mutation p.E500Q 0.28 deleterious(0.02) possibly_damaging(0.737) TCGA-CN-4723-01 17 10632345 10632345 C T TMEM220 Intron 0.23 TCGA-CN-4723-01 17 11631206 11631206 C T DNAH9 Silent p.I1927I 0.23 TCGA-CN-4723-01 17 11835355 11835355 G T DNAH9 Nonsense_Mutation p.E4044* 0.24 TCGA-CN-4723-01 17 12666707 12666707 G A MYOCD Missense_Mutation p.E903K 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-CN-4723-01 17 1586884 1586884 C T PRPF8 Missense_Mutation p.R71Q 0.28 deleterious(0.02) benign(0.386) TCGA-CN-4723-01 17 1635682 1635682 C T WDR81 Silent p.L1407L 0.30 TCGA-CN-4723-01 17 16722380 16722380 G A AC022596.6 RNA 0.16 TCGA-CN-4723-01 17 17062051 17062051 A T MPRIP Missense_Mutation p.K594M 0.29 deleterious(0.05) possibly_damaging(0.877) TCGA-CN-4723-01 17 18077224 18077224 C A MYO15A Missense_Mutation p.Q3494K 0.34 unknown(0) TCGA-CN-4723-01 17 18967239 18967239 C G SNORD3B-2 RNA 0.45 TCGA-CN-4723-01 17 19470501 19470501 C T SLC47A1 Silent p.I423I 0.31 TCGA-CN-4723-01 17 20354855 20354855 C A LGALS9B Missense_Mutation p.W287L 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-CN-4723-01 17 21319636 21319636 G C KCNJ12 Missense_Mutation p.E328Q 0.10 tolerated(0.07) benign(0.314) TCGA-CN-4723-01 17 26114705 26114705 C G NOS2 Missense_Mutation p.E156Q 0.28 deleterious(0.03) possibly_damaging(0.633) TCGA-CN-4723-01 17 27001330 27001330 G T SUPT6H Missense_Mutation p.D47Y 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-CN-4723-01 17 27809270 27809270 G C TAOK1 Missense_Mutation p.D207H 0.03 deleterious(0.01) probably_damaging(1) TCGA-CN-4723-01 17 32962027 32962027 G - TMEM132E Frame_Shift_Del p.V544Wfs*31 0.27 TCGA-CN-4723-01 17 33951593 33951593 C T AP2B1 Missense_Mutation p.R235W 0.23 deleterious(0) probably_damaging(0.925) TCGA-CN-4723-01 17 34499237 34499237 G A TBC1D3B Silent p.F158F 0.07 TCGA-CN-4723-01 17 34942500 34942500 C T GGNBP2 Missense_Mutation p.H505Y 0.03 deleterious_low_confidence(0.02) benign(0.032) TCGA-CN-4723-01 17 3494413 3494413 G C TRPV1 Intron 0.28 TCGA-CN-4723-01 17 35600327 35600327 C T ACACA Missense_Mutation p.S964N 0.32 deleterious(0.04) probably_damaging(0.981) TCGA-CN-4723-01 17 36104543 36104543 G A HNF1B Silent p.D111D 0.25 TCGA-CN-4723-01 17 38975820 38975820 C T KRT10 Missense_Mutation p.R441Q 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-CN-4723-01 17 39406593 39406593 G C KRTAP9-4 3'UTR 0.33 TCGA-CN-4723-01 17 39503388 39503388 C G KRT33A Silent p.L225L 0.29 TCGA-CN-4723-01 17 39881320 39881320 C T HAP1 Missense_Mutation p.R498Q 0.26 deleterious_low_confidence(0.03) benign(0.009) TCGA-CN-4723-01 17 40040448 40040448 C G ACLY Missense_Mutation p.E718Q 0.29 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 17 40947774 40947774 G A WNK4 Missense_Mutation p.E1052K 0.32 tolerated(0.1) possibly_damaging(0.84) TCGA-CN-4723-01 17 40948596 40948596 G A WNK4 Missense_Mutation p.M1243I 0.20 tolerated(0.08) possibly_damaging(0.647) TCGA-CN-4723-01 17 4463834 4463834 C T GGT6 5'UTR 0.21 TCGA-CN-4723-01 17 4498466 4498466 C T SMTNL2 Missense_Mutation p.S278L 0.24 deleterious(0.02) possibly_damaging(0.836) TCGA-CN-4723-01 17 45216151 45216151 G A CDC27 Missense_Mutation p.S559L 0.19 deleterious(0) probably_damaging(0.998) TCGA-CN-4723-01 17 45757436 45757436 G C KPNB1 Missense_Mutation p.D802H 0.27 tolerated(0.2) benign(0.001) TCGA-CN-4723-01 17 45787869 45787869 G C TBKBP1 Silent p.L575L 0.21 TCGA-CN-4723-01 17 48050615 48050615 C T DLX4 Silent p.L154L 0.35 TCGA-CN-4723-01 17 48267430 48267430 C T COL1A1 Missense_Mutation p.D831N 0.24 unknown(0) TCGA-CN-4723-01 17 4850169 4850169 C G PFN1 Intron 0.29 TCGA-CN-4723-01 17 48551078 48551082 AAGGA - ACSF2 Frame_Shift_Del p.K510Yfs*7 0.27 TCGA-CN-4723-01 17 48649387 48649387 G A CACNA1G Silent p.E245E 0.23 TCGA-CN-4723-01 17 5012997 5012997 C G ZNF232 Missense_Mutation p.E64Q 0.24 tolerated(0.07) possibly_damaging(0.607) TCGA-CN-4723-01 17 5086386 5086386 G C ZNF594 Nonsense_Mutation p.S389* 0.28 TCGA-CN-4723-01 17 5087056 5087056 G C ZNF594 Missense_Mutation p.Q166E 0.17 tolerated(0.21) probably_damaging(0.939) TCGA-CN-4723-01 17 51901140 51901140 C T KIF2B Missense_Mutation p.S249F 0.33 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 17 56540556 56540556 G A HSF5 Nonsense_Mutation p.Q377* 0.26 TCGA-CN-4723-01 17 56572322 56572322 C G MTMR4 Missense_Mutation p.E1061Q 0.19 tolerated(0.13) probably_damaging(0.98) TCGA-CN-4723-01 17 57058095 57058095 C G PPM1E Missense_Mutation p.F657L 0.23 tolerated_low_confidence(0.25) benign(0.013) TCGA-CN-4723-01 17 60088194 60088194 G A MED13 Nonsense_Mutation p.Q562* 0.28 TCGA-CN-4723-01 17 61987021 61987021 C G CSHL1 3'Flank 0.24 TCGA-CN-4723-01 17 61994806 61994806 C T GH1 Missense_Mutation p.D173N 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-CN-4723-01 17 62788529 62788529 C T PLEKHM1P RNA 0.35 TCGA-CN-4723-01 17 65156472 65156472 G A HELZ Silent p.L694L 0.25 TCGA-CN-4723-01 17 6547770 6547770 C T MED31 3'UTR 0.28 TCGA-CN-4723-01 17 7127637 7127637 C T ACADVL Intron 0.40 TCGA-CN-4723-01 17 7128359 7128359 C T ACADVL Silent p.I660I 0.22 TCGA-CN-4723-01 17 72522048 72522048 C G CD300LB Missense_Mutation p.G107A 0.25 deleterious(0.02) benign(0.026) TCGA-CN-4723-01 17 72858968 72858968 G C FDXR Missense_Mutation p.Q526E 0.27 tolerated(0.65) benign(0.001) TCGA-CN-4723-01 17 7330205 7330205 C A C17orf74 Missense_Mutation p.P299T 0.18 tolerated(0.09) probably_damaging(0.958) TCGA-CN-4723-01 17 73498777 73498777 C T CASKIN2 Missense_Mutation p.R793Q 0.19 tolerated(0.19) possibly_damaging(0.836) TCGA-CN-4723-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.43 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 17 76121048 76121048 C T TMC6 Silent p.P185P 0.44 TCGA-CN-4723-01 17 78345702 78345702 G A RNF213 Missense_Mutation p.E4152K 0.22 benign(0.002) TCGA-CN-4723-01 17 80442792 80442792 G C NARF Missense_Mutation p.E313Q 0.07 tolerated(0.64) benign(0.426) TCGA-CN-4723-01 17 80885853 80885853 C G TBCD Missense_Mutation p.I894M 0.27 deleterious(0.03) possibly_damaging(0.634) TCGA-CN-4723-01 17 8413181 8413181 C G MYH10 Missense_Mutation p.K1013N 0.23 probably_damaging(0.998) TCGA-CN-4723-01 17 8449949 8449949 C T MYH10 Missense_Mutation p.M397I 0.28 benign(0.028) TCGA-CN-4723-01 17 8457276 8457276 T C MYH10 Missense_Mutation p.T273A 0.51 probably_damaging(0.994) TCGA-CN-4723-01 17 8700928 8700928 C T MFSD6L Missense_Mutation p.C504Y 0.32 deleterious(0.02) benign(0.063) TCGA-CN-4723-01 18 14542978 14542978 C T POTEC Missense_Mutation p.M56I 0.08 deleterious_low_confidence(0.01) benign(0) TCGA-CN-4723-01 18 18629114 18629114 G A ROCK1 Missense_Mutation p.S118F 0.13 deleterious(0) probably_damaging(0.991) TCGA-CN-4723-01 18 19153502 19153502 G C ESCO1 Missense_Mutation p.Q435E 0.20 tolerated(0.2) benign(0.029) TCGA-CN-4723-01 18 20596847 20596847 G C RBBP8 Missense_Mutation p.R805T 0.16 deleterious(0) probably_damaging(0.932) TCGA-CN-4723-01 18 22048902 22048902 C T HRH4 Missense_Mutation p.S115L 0.15 deleterious(0.03) benign(0.168) TCGA-CN-4723-01 18 29211016 29211016 C T B4GALT6 Missense_Mutation p.D228N 0.33 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 18 43534974 43534974 C T EPG5 Missense_Mutation p.V132I 0.33 tolerated_low_confidence(0.25) benign(0.001) TCGA-CN-4723-01 18 43664124 43664124 G C ATP5A1 3'UTR 0.70 TCGA-CN-4723-01 18 44660911 44660911 C T HDHD2 Missense_Mutation p.R89K 0.37 tolerated(0.16) benign(0.096) TCGA-CN-4723-01 18 46905007 46905007 G A DYM Silent p.F117F 0.35 TCGA-CN-4723-01 18 47810269 47810269 C T CXXC1 Missense_Mutation p.E474K 0.36 deleterious(0.02) probably_damaging(0.981) TCGA-CN-4723-01 18 48575103 48575103 G C SMAD4 Missense_Mutation p.W99C 0.39 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 18 5410589 5410589 G A EPB41L3 Silent p.A699A 0.36 TCGA-CN-4723-01 18 56964048 56964048 G C CPLX4 Missense_Mutation p.S122C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 18 72343890 72343890 A G ZNF407 Silent p.P305P 0.41 TCGA-CN-4723-01 18 909481 909481 G C ADCYAP1 Missense_Mutation p.E126Q 0.27 deleterious(0.04) benign(0.288) TCGA-CN-4723-01 18 9570206 9570206 C A PPP4R1 Nonsense_Mutation p.E508* 0.23 TCGA-CN-4723-01 19 10221527 10221527 G A PPAN Missense_Mutation p.E396K 0.21 tolerated(0.07) benign(0.222) TCGA-CN-4723-01 19 10610625 10610625 C G KEAP1 Missense_Mutation p.D29H 0.22 deleterious(0.03) benign(0.009) TCGA-CN-4723-01 19 10675660 10675660 C T KRI1 Silent p.L79L 0.26 TCGA-CN-4723-01 19 10689577 10689577 G A AP1M2 Silent p.I293I 0.26 TCGA-CN-4723-01 19 1080711 1080711 C A HMHA1 Missense_Mutation p.S664Y 0.21 deleterious(0) probably_damaging(0.986) TCGA-CN-4723-01 19 11515837 11515837 C G RGL3 Missense_Mutation p.E391Q 0.03 deleterious(0) probably_damaging(0.931) TCGA-CN-4723-01 19 12721450 12721450 G C ZNF490 Silent p.L15L 0.28 TCGA-CN-4723-01 19 1272552 1272552 C T CIRBP 3'UTR 0.31 TCGA-CN-4723-01 19 12949367 12949367 C T MAST1 5'UTR 0.20 TCGA-CN-4723-01 19 13060211 13060211 C G RAD23A Missense_Mutation p.Q268E 0.20 tolerated(0.39) benign(0.018) TCGA-CN-4723-01 19 15547894 15547894 G A WIZ Silent p.F84F 0.20 TCGA-CN-4723-01 19 18679247 18679247 G A KXD1 Missense_Mutation p.E113K 0.20 tolerated(0.16) benign(0.01) TCGA-CN-4723-01 19 22018944 22018944 G T ZNF43 5'UTR 0.27 TCGA-CN-4723-01 19 22157155 22157155 T C ZNF208 Silent p.K227K 0.27 TCGA-CN-4723-01 19 2275792 2275792 C G C19orf35 Missense_Mutation p.E437Q 0.30 deleterious(0.03) benign(0.255) TCGA-CN-4723-01 19 2438470 2438470 G A LMNB2 Missense_Mutation p.S154F 0.31 deleterious(0) possibly_damaging(0.73) TCGA-CN-4723-01 19 30193787 30193787 C G C19orf12 Missense_Mutation p.Q97H 0.04 deleterious(0) probably_damaging(0.952) TCGA-CN-4723-01 19 30936498 30936498 G A ZNF536 Missense_Mutation p.D677N 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-CN-4723-01 19 33467558 33467558 G T C19orf40 Missense_Mutation p.Q206H 0.24 tolerated(0.3) benign(0.006) TCGA-CN-4723-01 19 33696521 33696521 G A LRP3 Missense_Mutation p.C282Y 0.22 deleterious(0) probably_damaging(0.972) TCGA-CN-4723-01 19 3435121 3435121 G C NFIC Missense_Mutation p.D292H 0.50 deleterious(0) probably_damaging(0.909) TCGA-CN-4723-01 19 36940594 36940594 C G ZNF566 Missense_Mutation p.R182T 0.26 tolerated(0.41) benign(0.164) TCGA-CN-4723-01 19 3734394 3734394 C T TJP3 Missense_Mutation p.A325V 0.19 tolerated(0.16) benign(0.004) TCGA-CN-4723-01 19 37383092 37383092 G A ZNF829 Nonsense_Mutation p.R282* 0.17 TCGA-CN-4723-01 19 37643675 37643675 G T ZNF585A Missense_Mutation p.H321N 0.32 deleterious(0) probably_damaging(0.998) TCGA-CN-4723-01 19 38189234 38189234 G T ZNF607 Missense_Mutation p.H600N 0.22 tolerated(0.38) benign(0.026) TCGA-CN-4723-01 19 3982347 3982347 C T EEF2 Missense_Mutation p.E230K 0.28 tolerated(1) probably_damaging(0.979) TCGA-CN-4723-01 19 39897486 39897486 C T ZFP36 5'UTR 0.28 TCGA-CN-4723-01 19 40023100 40023100 C G EID2B Missense_Mutation p.E115Q 0.37 deleterious(0.03) probably_damaging(0.962) TCGA-CN-4723-01 19 40430302 40430302 A G FCGBP Silent p.V547V 0.24 TCGA-CN-4723-01 19 40698342 40698342 C T MAP3K10 Missense_Mutation p.P135L 0.13 tolerated(0.17) benign(0.285) TCGA-CN-4723-01 19 41074133 41074133 G C SPTBN4 Missense_Mutation p.E2301Q 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-CN-4723-01 19 41825513 41825513 C G CCDC97 Missense_Mutation p.F179L 0.18 tolerated(0.52) benign(0.015) TCGA-CN-4723-01 19 42600360 42600360 G C POU2F2 Silent p.L179L 0.17 TCGA-CN-4723-01 19 43268174 43268174 C T PSG8 Silent p.L108L 0.27 TCGA-CN-4723-01 19 43689186 43689186 G C PSG5 Missense_Mutation p.Q60E 0.22 tolerated(0.37) benign(0.31) TCGA-CN-4723-01 19 45262812 45262813 - G BCL3 Frame_Shift_Ins p.V437Gfs*30 0.26 TCGA-CN-4723-01 19 45579002 45579002 G C ZNF296 Silent p.L139L 0.25 TCGA-CN-4723-01 19 47151760 47151760 G C DACT3 Silent p.L623L 0.22 TCGA-CN-4723-01 19 47912796 47912796 C A MEIS3 Missense_Mutation p.M202I 0.26 tolerated(0.49) benign(0) TCGA-CN-4723-01 19 48982533 48982533 C T CYTH2 3'UTR 0.17 TCGA-CN-4723-01 19 49611111 49611111 G A SNRNP70 Missense_Mutation p.R242K 0.29 tolerated(0.18) unknown(0) TCGA-CN-4723-01 19 50364730 50364730 G A PNKP Missense_Mutation p.S475L 0.23 deleterious(0.01) benign(0.438) TCGA-CN-4723-01 19 50549104 50549104 C T ZNF473 Silent p.F468F 0.22 TCGA-CN-4723-01 19 51022334 51022334 G A LRRC4B Silent p.L212L 0.35 TCGA-CN-4723-01 19 51742996 51742996 C T CD33 3'UTR 0.24 TCGA-CN-4723-01 19 52149128 52149129 - G SIGLEC14 Frame_Shift_Ins p.R203Qfs*75 0.20 TCGA-CN-4723-01 19 52659726 52659726 G A ZNF836 Missense_Mutation p.H404Y 0.04 deleterious(0) probably_damaging(0.982) TCGA-CN-4723-01 19 52724383 52724383 C A PPP2R1A Silent p.I505I 0.22 TCGA-CN-4723-01 19 52941053 52941053 C T ZNF534 Nonsense_Mutation p.Q127* 0.29 TCGA-CN-4723-01 19 53117232 53117232 G A ZNF83 Nonsense_Mutation p.Q196* 0.22 TCGA-CN-4723-01 19 53612605 53612605 C T ZNF415 Missense_Mutation p.M231I 0.29 deleterious(0) benign(0.001) TCGA-CN-4723-01 19 53762839 53762839 C A VN1R2 3'UTR 0.25 TCGA-CN-4723-01 19 54080889 54080889 G C ZNF331 Missense_Mutation p.E359Q 0.26 tolerated(0.13) probably_damaging(0.993) TCGA-CN-4723-01 19 54255684 54255684 C G MIR519A1 RNA 0.26 TCGA-CN-4723-01 19 54297174 54297174 G C NLRP12 3'UTR 0.27 TCGA-CN-4723-01 19 54327468 54327468 G C NLRP12 5'UTR 0.35 TCGA-CN-4723-01 19 5456015 5456015 G A ZNRF4 Silent p.K171K 0.26 TCGA-CN-4723-01 19 55340901 55340901 C G KIR3DL1 Silent p.L362L 0.37 TCGA-CN-4723-01 19 55450851 55450851 G A NLRP7 Missense_Mutation p.R446C 0.22 tolerated(0.22) benign(0.029) TCGA-CN-4723-01 19 55756738 55756738 G A PPP6R1 Silent p.F149F 0.35 TCGA-CN-4723-01 19 55853367 55853367 C T SUV420H2 Silent p.L21L 0.29 TCGA-CN-4723-01 19 56162717 56162717 G A CCDC106 Missense_Mutation p.E128K 0.38 tolerated(0.13) possibly_damaging(0.481) TCGA-CN-4723-01 19 56303801 56303801 G C NLRP11 Missense_Mutation p.S793R 0.25 tolerated(0.35) possibly_damaging(0.839) TCGA-CN-4723-01 19 56423803 56423803 G A NLRP13 Silent p.F460F 0.28 TCGA-CN-4723-01 19 56515156 56515156 C T NLRP5 Missense_Mutation p.S46F 0.26 tolerated(0.22) benign(0.004) TCGA-CN-4723-01 19 57027752 57027752 C G ZNF471 Missense_Mutation p.Q48E 0.21 deleterious(0.02) benign(0.042) TCGA-CN-4723-01 19 57037129 57037129 C T ZNF471 Missense_Mutation p.H565Y 0.26 deleterious(0) probably_damaging(0.99) TCGA-CN-4723-01 19 58132674 58132674 G A ZNF134 Missense_Mutation p.G396E 0.22 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 19 58199369 58199369 C G ZNF551 Missense_Mutation p.Q576E 0.26 tolerated(0.74) benign(0.079) TCGA-CN-4723-01 19 58370226 58370226 G C CTD-2583A14.10 Missense_Mutation p.R149T 0.14 tolerated(0.07) probably_damaging(0.954) TCGA-CN-4723-01 19 58639517 58639517 C T ZNF329 Missense_Mutation p.E452K 0.27 deleterious(0) possibly_damaging(0.878) TCGA-CN-4723-01 19 6427441 6427441 G A SLC25A41 Silent p.I232I 0.29 TCGA-CN-4723-01 19 7585641 7585641 G A ZNF358 Missense_Mutation p.D505N 0.25 tolerated_low_confidence(0.08) probably_damaging(0.99) TCGA-CN-4723-01 19 900136 900136 G C R3HDM4 Silent p.A162A 0.34 TCGA-CN-4723-01 19 9062946 9062946 G C MUC16 Nonsense_Mutation p.S8167* 0.29 TCGA-CN-4723-01 19 9065271 9065271 G A MUC16 Missense_Mutation p.P7392L 0.33 unknown(0) TCGA-CN-4723-01 19 9068706 9068706 G C MUC16 Missense_Mutation p.S6247C 0.28 unknown(0) TCGA-CN-4723-01 19 9578057 9578057 C T ZNF560 Silent p.G522G 0.22 TCGA-CN-4723-01 1 100203724 100203724 C G FRRS1 Missense_Mutation p.R226T 0.08 tolerated(0.48) benign(0.053) TCGA-CN-4723-01 1 109806290 109806290 C G CELSR2 Missense_Mutation p.S1631W 0.31 deleterious(0.01) possibly_damaging(0.712) TCGA-CN-4723-01 1 113000008 113000008 G C CTTNBP2NL Missense_Mutation p.E632Q 0.42 deleterious(0.02) possibly_damaging(0.512) TCGA-CN-4723-01 1 114483834 114483834 G C HIPK1 Missense_Mutation p.D277H 0.35 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 1 119619152 119619152 C G WARS2 Missense_Mutation p.E57Q 0.30 tolerated(0.65) possibly_damaging(0.591) TCGA-CN-4723-01 1 12726745 12726745 G A AADACL4 Silent p.%3D 0.23 TCGA-CN-4723-01 1 12835020 12835020 C T PRAMEF12 Nonsense_Mutation p.Q4* 0.25 TCGA-CN-4723-01 1 12855732 12855732 G A PRAMEF1 Missense_Mutation p.E338K 0.23 tolerated(0.13) benign(0.154) TCGA-CN-4723-01 1 12884942 12884942 C G PRAMEF11 Missense_Mutation p.R390T 0.25 deleterious(0.02) probably_damaging(0.987) TCGA-CN-4723-01 1 12908067 12908067 G C HNRNPCL1 Missense_Mutation p.L26V 0.09 tolerated(0.09) benign(0.043) TCGA-CN-4723-01 1 144882644 144882644 C G PDE4DIP Silent p.L1125L 0.07 TCGA-CN-4723-01 1 145580472 145580472 G C PIAS3 Intron 0.15 TCGA-CN-4723-01 1 146763163 146763163 G C CHD1L Splice_Site p.X774_splice 0.13 TCGA-CN-4723-01 1 149857978 149857978 G C HIST2H2BE Missense_Mutation p.F71L 0.33 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-CN-4723-01 1 149859411 149859411 G T HIST2H2AB Nonsense_Mutation p.S19* 0.32 TCGA-CN-4723-01 1 150259239 150259239 C T C1orf51 Missense_Mutation p.S344L 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.656) TCGA-CN-4723-01 1 151377233 151377233 C G POGZ 3'UTR 0.31 TCGA-CN-4723-01 1 151377284 151377284 C G POGZ Missense_Mutation p.E1409D 0.37 tolerated_low_confidence(0.13) benign(0.022) TCGA-CN-4723-01 1 151491282 151491282 C G CGN Nonsense_Mutation p.S96* 0.33 TCGA-CN-4723-01 1 152281432 152281432 G C FLG Nonsense_Mutation p.S1977* 0.35 TCGA-CN-4723-01 1 152281579 152281579 G A FLG Missense_Mutation p.S1928L 0.35 benign(0.307) TCGA-CN-4723-01 1 152286936 152286936 C G FLG Missense_Mutation p.K142N 0.28 possibly_damaging(0.637) TCGA-CN-4723-01 1 152286973 152286973 C G FLG Missense_Mutation p.R130T 0.29 benign(0.039) TCGA-CN-4723-01 1 154197669 154197669 C T UBAP2L Nonsense_Mutation p.Q24* 0.10 TCGA-CN-4723-01 1 154223669 154223669 C T UBAP2L Silent p.L456L 0.38 TCGA-CN-4723-01 1 154427027 154427027 G C IL6R Missense_Mutation p.G377A 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-CN-4723-01 1 155034448 155034448 G A ADAM15 Silent p.P807P 0.39 TCGA-CN-4723-01 1 155717759 155717759 C - GON4L 3'Flank 0.12 TCGA-CN-4723-01 1 158262651 158262651 C T CD1C Silent p.I292I 0.21 TCGA-CN-4723-01 1 158621223 158621223 G C SPTA1 Missense_Mutation p.I1137M 0.34 tolerated(0.44) probably_damaging(0.978) TCGA-CN-4723-01 1 158812162 158812162 A G MNDA Silent p.P73P 0.31 TCGA-CN-4723-01 1 160106385 160106385 C G ATP1A2 Missense_Mutation p.F863L 0.18 deleterious(0.03) possibly_damaging(0.739) TCGA-CN-4723-01 1 160313059 160313059 G T COPA 5'Flank 0.16 TCGA-CN-4723-01 1 160313069 160313069 G A NCSTN 5'UTR 0.12 TCGA-CN-4723-01 1 161512965 161512965 G A FCGR3A Missense_Mutation p.S237L 0.36 tolerated(0.35) benign(0.01) TCGA-CN-4723-01 1 16344280 16344280 G A HSPB7 Missense_Mutation p.S60L 0.35 tolerated(0.17) benign(0.028) TCGA-CN-4723-01 1 168014243 168014243 C G DCAF6 Missense_Mutation p.S679C 0.12 tolerated_low_confidence(0.24) benign(0.062) TCGA-CN-4723-01 1 168065809 168065809 G A GPR161 Missense_Mutation p.R366W 0.39 deleterious(0) probably_damaging(0.992) TCGA-CN-4723-01 1 168160697 168160697 G A TIPRL Missense_Mutation p.E159K 0.12 deleterious(0) probably_damaging(0.992) TCGA-CN-4723-01 1 172539802 172539802 G C SUCO Splice_Site p.X328_splice 0.28 TCGA-CN-4723-01 1 172558197 172558197 G C SUCO Missense_Mutation p.L652F 0.38 tolerated(0.05) benign(0.025) TCGA-CN-4723-01 1 173795878 173795878 C T DARS2 Missense_Mutation p.H61Y 0.11 deleterious(0) possibly_damaging(0.845) TCGA-CN-4723-01 1 176564298 176564298 C T PAPPA2 Missense_Mutation p.R520W 0.37 deleterious(0.02) probably_damaging(0.912) TCGA-CN-4723-01 1 17961342 17961342 G C ARHGEF10L Missense_Mutation p.E586D 0.30 tolerated(0.67) benign(0.006) TCGA-CN-4723-01 1 180243597 180243597 G C LHX4 Silent p.L352L 0.13 TCGA-CN-4723-01 1 182869253 182869253 G C SHCBP1L Silent p.L609L 0.12 TCGA-CN-4723-01 1 185143909 185143909 A G SWT1 Silent p.Q210Q 0.17 TCGA-CN-4723-01 1 200534687 200534687 C G KIF14 Missense_Mutation p.D1258H 0.05 deleterious(0.01) benign(0.091) TCGA-CN-4723-01 1 200960823 200960823 G A KIF21B Missense_Mutation p.R806W 0.38 deleterious(0) probably_damaging(0.993) TCGA-CN-4723-01 1 202861736 202861736 G A KLHL12 Silent p.I544I 0.10 TCGA-CN-4723-01 1 205210816 205210816 C T TMCC2 Missense_Mutation p.R131C 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.858) TCGA-CN-4723-01 1 206810293 206810293 G C DYRK3 Intron 0.22 TCGA-CN-4723-01 1 207087216 207087216 G C FAIM3 Missense_Mutation p.F87L 0.03 deleterious(0) probably_damaging(0.966) TCGA-CN-4723-01 1 208218433 208218433 G A PLXNA2 Silent p.L1206L 0.04 TCGA-CN-4723-01 1 21031010 21031010 G A KIF17 Silent p.R351R 0.17 TCGA-CN-4723-01 1 216498758 216498758 A - USH2A Frame_Shift_Del p.F344Lfs*26 0.26 TCGA-CN-4723-01 1 217783737 217783737 G A GPATCH2 Nonsense_Mutation p.Q342* 0.13 TCGA-CN-4723-01 1 22329569 22329569 C T CELA3A Silent p.S39S 0.14 TCGA-CN-4723-01 1 227171832 227171832 G C ADCK3 Missense_Mutation p.E432Q 0.09 tolerated(0.18) benign(0.068) TCGA-CN-4723-01 1 231830436 231830436 G T DISC1 Missense_Mutation p.G311V 0.13 tolerated(0.07) probably_damaging(0.96) TCGA-CN-4723-01 1 232601014 232601014 G T SIPA1L2 Silent p.R798R 0.14 TCGA-CN-4723-01 1 23637048 23637048 G C HNRNPR Missense_Mutation p.Q604E 0.21 deleterious_low_confidence(0) unknown(0) TCGA-CN-4723-01 1 236416724 236416724 C G ERO1LB Missense_Mutation p.E102Q 0.39 tolerated(0.08) benign(0.11) TCGA-CN-4723-01 1 236719107 236719107 C T HEATR1 Missense_Mutation p.E1883K 0.05 deleterious(0.02) benign(0.158) TCGA-CN-4723-01 1 243319598 243319598 G C CEP170 Missense_Mutation p.S1279C 0.11 deleterious(0.02) possibly_damaging(0.873) TCGA-CN-4723-01 1 243362377 243362377 C T CEP170 Missense_Mutation p.E206K 0.12 deleterious(0.01) benign(0.003) TCGA-CN-4723-01 1 243504340 243504340 G A SDCCAG8 Splice_Site p.X408_splice 0.08 TCGA-CN-4723-01 1 24447838 24447838 G A IL22RA1 Silent p.A394A 0.31 TCGA-CN-4723-01 1 247694800 247694800 C T OR2C3 3'UTR 0.18 TCGA-CN-4723-01 1 248637600 248637600 G C OR2T3 Missense_Mutation p.E317Q 0.22 tolerated(1) benign(0.027) TCGA-CN-4723-01 1 24995948 24995948 C G SRRM1 Missense_Mutation p.Q692E 0.22 unknown(0) TCGA-CN-4723-01 1 26688267 26688267 C G ZNF683 Missense_Mutation p.E464Q 0.22 deleterious(0.02) probably_damaging(0.977) TCGA-CN-4723-01 1 27101465 27101465 C T ARID1A Missense_Mutation p.P1583S 0.35 unknown(0) TCGA-CN-4723-01 1 28806962 28806962 G A PHACTR4 Splice_Site p.X546_splice 0.18 TCGA-CN-4723-01 1 28807096 28807096 G C PHACTR4 Missense_Mutation p.Q590H 0.18 deleterious(0.01) probably_damaging(0.947) TCGA-CN-4723-01 1 34667794 34667794 C G C1orf94 Silent p.L460L 0.23 TCGA-CN-4723-01 1 36230196 36230196 C T CLSPN Missense_Mutation p.E85K 0.12 tolerated(0.17) possibly_damaging(0.715) TCGA-CN-4723-01 1 36521242 36521242 G A AGO3 Missense_Mutation p.E827K 0.04 tolerated(0.1) possibly_damaging(0.881) TCGA-CN-4723-01 1 38449853 38449853 C T SF3A3 Silent p.L152L 0.17 TCGA-CN-4723-01 1 39305115 39305115 G T RRAGC 3'UTR 0.18 TCGA-CN-4723-01 1 39792905 39792905 G A MACF1 Silent p.E1503E 0.14 TCGA-CN-4723-01 1 39806314 39806314 G C MACF1 Intron 0.19 TCGA-CN-4723-01 1 39833972 39833972 G C MACF1 Missense_Mutation p.K2246N 0.21 benign(0.011) TCGA-CN-4723-01 1 40313713 40313713 C T TRIT1 Missense_Mutation p.E254K 0.19 tolerated(0.28) benign(0.038) TCGA-CN-4723-01 1 40703619 40703619 C G RLF Nonsense_Mutation p.S1082* 0.20 TCGA-CN-4723-01 1 41012566 41012566 G A ZNF684 Missense_Mutation p.D191N 0.12 deleterious(0.04) benign(0.012) TCGA-CN-4723-01 1 41946860 41946860 C G EDN2 Missense_Mutation p.E117Q 0.27 tolerated(0.47) benign(0.035) TCGA-CN-4723-01 1 43636430 43636430 C T EBNA1BP2 Silent p.Q203Q 0.19 TCGA-CN-4723-01 1 43907221 43907221 C T SZT2 Missense_Mutation p.P2463S 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-CN-4723-01 1 43908875 43908875 G A SZT2 Missense_Mutation p.M2755I 0.22 tolerated(0.12) benign(0.041) TCGA-CN-4723-01 1 44456112 44456112 C T B4GALT2 Missense_Mutation p.R400W 0.04 deleterious_low_confidence(0) benign(0.003) TCGA-CN-4723-01 1 45241553 45241553 C T RPS8 Intron 0.33 TCGA-CN-4723-01 1 46654356 46654356 C T POMGNT1 3'UTR 0.20 TCGA-CN-4723-01 1 48697260 48697260 G A SLC5A9 Silent p.V243V 0.14 TCGA-CN-4723-01 1 52821958 52821958 G C CC2D1B Missense_Mutation p.Q658E 0.17 tolerated(1) benign(0.011) TCGA-CN-4723-01 1 52981631 52981631 C G ZCCHC11 Missense_Mutation p.E272Q 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-CN-4723-01 1 53373583 53373583 C G ECHDC2 Silent p.V107V 0.11 TCGA-CN-4723-01 1 54269611 54269611 G C NDC1 Silent p.L352L 0.18 TCGA-CN-4723-01 1 55089033 55089033 G C FAM151A Silent p.V12V 0.19 TCGA-CN-4723-01 1 55130890 55130890 G C MROH7 Missense_Mutation p.E428Q 0.10 deleterious_low_confidence(0.03) benign(0.299) TCGA-CN-4723-01 1 57257831 57257831 G C C1orf168 Missense_Mutation p.Q219E 0.15 deleterious(0.04) benign(0.108) TCGA-CN-4723-01 1 62455875 62455875 G C INADL Missense_Mutation p.E1236Q 0.16 tolerated(0.07) possibly_damaging(0.872) TCGA-CN-4723-01 1 6648384 6648384 C T ZBTB48 Silent p.F521F 0.32 TCGA-CN-4723-01 1 66838008 66838008 G A PDE4B Missense_Mutation p.D620N 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 1 67340502 67340502 G A WDR78 Silent p.V254V 0.25 TCGA-CN-4723-01 1 68897200 68897200 C T RPE65 Silent p.E399E 0.36 TCGA-CN-4723-01 1 90401042 90401042 G A LRRC8D Silent p.L805L 0.37 TCGA-CN-4723-01 1 909868 909868 C T PLEKHN1 Silent p.L583L 0.16 TCGA-CN-4723-01 1 92181790 92181790 C T TGFBR3 Intron 0.24 TCGA-CN-4723-01 1 94697168 94697168 C G ARHGAP29 5'UTR 0.44 TCGA-CN-4723-01 20 10653358 10653358 G A JAG1 Silent p.F126F 0.30 TCGA-CN-4723-01 20 18162426 18162426 G C CSRP2BP Missense_Mutation p.D582H 0.31 deleterious(0.01) benign(0.149) TCGA-CN-4723-01 20 2464518 2464518 G A ZNF343 Silent p.S363S 0.18 TCGA-CN-4723-01 20 2640908 2640908 C T IDH3B Splice_Site p.X256_splice 0.22 TCGA-CN-4723-01 20 29632621 29632621 C G FRG1B Missense_Mutation p.Q146E 0.07 deleterious(0) possibly_damaging(0.871) TCGA-CN-4723-01 20 307658 307658 G C SOX12 3'UTR 0.25 TCGA-CN-4723-01 20 3128246 3128246 C T FASTKD5 Missense_Mutation p.D491N 0.33 tolerated(0.31) benign(0.023) TCGA-CN-4723-01 20 3581669 3581669 C G ATRN Nonsense_Mutation p.S1214* 0.06 TCGA-CN-4723-01 20 39832032 39832032 G C ZHX3 Missense_Mutation p.L509V 0.19 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 20 43850534 43850534 G C SEMG2 Missense_Mutation p.L87F 0.27 tolerated(0.14) probably_damaging(0.995) TCGA-CN-4723-01 20 47990509 47990509 C T KCNB1 Missense_Mutation p.E530K 0.24 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-CN-4723-01 20 48330154 48330154 G A B4GALT5 Missense_Mutation p.S25L 0.38 tolerated(0.14) benign(0.194) TCGA-CN-4723-01 20 49552791 49552791 C T DPM1 Missense_Mutation p.R191Q 0.28 deleterious(0.01) benign(0.4) TCGA-CN-4723-01 20 6021786 6021786 G A LRRN4 Missense_Mutation p.S702F 0.31 deleterious(0.03) benign(0.034) TCGA-CN-4723-01 20 61594629 61594629 C T SLC17A9 Silent p.L211L 0.13 TCGA-CN-4723-01 20 62234366 62234366 G T GMEB2 Silent p.L103L 0.03 TCGA-CN-4723-01 20 62587639 62587639 C G UCKL1 Missense_Mutation p.E29D 0.18 tolerated_low_confidence(0.59) benign(0) TCGA-CN-4723-01 21 27284272 27284272 C T APP Missense_Mutation p.E564K 0.23 deleterious(0.01) benign(0.149) TCGA-CN-4723-01 21 28338537 28338537 G A ADAMTS5 Silent p.P58P 0.12 TCGA-CN-4723-01 21 32503217 32503217 C G TIAM1 Missense_Mutation p.K1311N 0.20 deleterious(0) possibly_damaging(0.567) TCGA-CN-4723-01 21 33671366 33671366 G A MRAP Silent p.E28E 0.37 TCGA-CN-4723-01 21 36079593 36079593 G C CLIC6 Missense_Mutation p.E464Q 0.19 deleterious(0.02) benign(0.119) TCGA-CN-4723-01 21 38884327 38884327 G C DYRK1A Missense_Mutation p.Q595H 0.27 tolerated_low_confidence(0.1) benign(0.002) TCGA-CN-4723-01 21 39672179 39672179 G C KCNJ15 Missense_Mutation p.Q332H 0.22 deleterious(0) possibly_damaging(0.482) TCGA-CN-4723-01 21 40191474 40191474 G A ETS2 Missense_Mutation p.E287K 0.22 tolerated(0.1) possibly_damaging(0.616) TCGA-CN-4723-01 21 40574319 40574319 G C BRWD1 Nonsense_Mutation p.S1506* 0.28 TCGA-CN-4723-01 21 41165472 41165472 C G IGSF5 Missense_Mutation p.L354V 0.22 tolerated(0.06) benign(0.007) TCGA-CN-4723-01 21 44841567 44841567 G C SIK1 Silent p.L150L 0.19 TCGA-CN-4723-01 21 45107740 45107740 G A RRP1B Silent p.E495E 0.17 TCGA-CN-4723-01 21 45554008 45554008 G A C21orf33 Missense_Mutation p.D56N 0.17 deleterious(0) probably_damaging(0.938) TCGA-CN-4723-01 21 45826645 45826645 G T TRPM2 Missense_Mutation p.D987Y 0.30 deleterious(0) probably_damaging(0.983) TCGA-CN-4723-01 21 45838391 45838391 C T TRPM2 Silent p.F1138F 0.20 TCGA-CN-4723-01 22 17583169 17583169 G C IL17RA Missense_Mutation p.E247Q 0.27 tolerated(0.53) benign(0.005) TCGA-CN-4723-01 22 17601079 17601079 G A CECR6 Silent p.F313F 0.27 TCGA-CN-4723-01 22 20394559 20394559 C G PI4KAP1 RNA 0.17 TCGA-CN-4723-01 22 24179222 24179222 G A DERL3 Intron 0.27 TCGA-CN-4723-01 22 29141879 29141879 G A HSCB Missense_Mutation p.E151K 0.24 deleterious(0.04) benign(0.092) TCGA-CN-4723-01 22 31059444 31059444 G A DUSP18 Missense_Mutation p.R183C 0.16 tolerated(0.06) benign(0.001) TCGA-CN-4723-01 22 31091253 31091253 C T OSBP2 Silent p.F119F 0.27 TCGA-CN-4723-01 22 32014301 32014301 T A SFI1 Missense_Mutation p.V1209E 0.28 deleterious(0) probably_damaging(0.982) TCGA-CN-4723-01 22 32804159 32804159 C G RTCB Intron 0.19 TCGA-CN-4723-01 22 35817335 35817335 C T MCM5 Silent p.I619I 0.27 TCGA-CN-4723-01 22 36708220 36708220 G A MYH9 Silent p.F534F 0.23 TCGA-CN-4723-01 22 37603432 37603432 C G SSTR3 Missense_Mutation p.M137I 0.26 deleterious(0.02) possibly_damaging(0.823) TCGA-CN-4723-01 22 37888526 37888526 G A CARD10 Silent p.S889S 0.28 TCGA-CN-4723-01 22 38696025 38696025 A T CSNK1E Missense_Mutation p.M204K 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CN-4723-01 22 38696026 38696026 T G CSNK1E Missense_Mutation p.M204L 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.815) TCGA-CN-4723-01 22 40060842 40060842 C G CACNA1I Missense_Mutation p.I1255M 0.13 deleterious(0) possibly_damaging(0.767) TCGA-CN-4723-01 22 41226906 41226906 C T ST13 Missense_Mutation p.E246K 0.20 tolerated(0.15) possibly_damaging(0.777) TCGA-CN-4723-01 22 43287098 43287098 G T PACSIN2 Nonsense_Mutation p.S103* 0.18 TCGA-CN-4723-01 22 46760610 46760610 G A CELSR1 Missense_Mutation p.P2860S 0.24 tolerated(0.74) benign(0.005) TCGA-CN-4723-01 2 10098934 10098934 C T GRHL1 Missense_Mutation p.S76L 0.24 tolerated(0.86) benign(0.002) TCGA-CN-4723-01 2 103068542 103068542 C T IL18RAP Silent p.F567F 0.13 TCGA-CN-4723-01 2 119699837 119699837 C G MARCO 5'UTR 0.23 TCGA-CN-4723-01 2 128366312 128366312 G A MYO7B Silent p.Q891Q 0.14 TCGA-CN-4723-01 2 128610608 128610608 C G POLR2D Missense_Mutation p.E49Q 0.20 tolerated(0.21) benign(0.128) TCGA-CN-4723-01 2 133541612 133541612 C T NCKAP5 Silent p.V924V 0.33 TCGA-CN-4723-01 2 133542513 133542513 C G NCKAP5 Missense_Mutation p.G624A 0.19 tolerated(0.28) benign(0.204) TCGA-CN-4723-01 2 135745719 135745719 G C MAP3K19 Silent p.L241L 0.16 TCGA-CN-4723-01 2 136620310 136620310 C T MCM6 Missense_Mutation p.E363K 0.34 tolerated(0.45) possibly_damaging(0.483) TCGA-CN-4723-01 2 152548584 152548584 G C NEB Missense_Mutation p.Q699E 0.21 benign(0.01) TCGA-CN-4723-01 2 153415272 153415272 G C FMNL2 Silent p.L126L 0.22 TCGA-CN-4723-01 2 157425415 157425415 C G GPD2 Missense_Mutation p.S415C 0.20 deleterious(0) probably_damaging(0.995) TCGA-CN-4723-01 2 15768620 15768620 G T DDX1 Missense_Mutation p.D580Y 0.22 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 2 158399269 158399269 G C ACVR1C Nonsense_Mutation p.S350* 0.33 TCGA-CN-4723-01 2 160295624 160295624 C G BAZ2B Missense_Mutation p.D266H 0.27 possibly_damaging(0.861) TCGA-CN-4723-01 2 160295712 160295712 C G BAZ2B Missense_Mutation p.K236N 0.31 benign(0.403) TCGA-CN-4723-01 2 163393474 163393474 C G KCNH7 Missense_Mutation p.E142Q 0.25 tolerated(0.33) benign(0.067) TCGA-CN-4723-01 2 164466133 164466133 G A FIGN Nonsense_Mutation p.Q737* 0.18 TCGA-CN-4723-01 2 1647338 1647338 C G PXDN Missense_Mutation p.E1252Q 0.27 deleterious(0) probably_damaging(0.955) TCGA-CN-4723-01 2 166848631 166848631 G C SCN1A Missense_Mutation p.F1718L 0.16 deleterious(0.01) probably_damaging(1) TCGA-CN-4723-01 2 170139405 170139405 C G LRP2 Missense_Mutation p.Q383H 0.20 benign(0.004) TCGA-CN-4723-01 2 175006586 175006586 C G OLA1 Silent p.V172V 0.17 TCGA-CN-4723-01 2 178098944 178098944 C G NFE2L2 Missense_Mutation p.R34P 0.32 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 2 178482760 178482760 C G TTC30A Missense_Mutation p.E224Q 0.29 tolerated(0.07) possibly_damaging(0.882) TCGA-CN-4723-01 2 178977396 178977396 G C RBM45 Silent p.L41L 0.18 TCGA-CN-4723-01 2 179201157 179201157 G A OSBPL6 Missense_Mutation p.E263K 0.30 tolerated(1) probably_damaging(0.953) TCGA-CN-4723-01 2 179463706 179463706 C T TTN Missense_Mutation p.D18911N 0.27 TCGA-CN-4723-01 2 17947933 17947933 C T GEN1 Missense_Mutation p.L205F 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 2 179487426 179487426 C T TTN Missense_Mutation p.E14962K 0.48 TCGA-CN-4723-01 2 179616570 179616570 T C TTN Intron 0.21 TCGA-CN-4723-01 2 179639765 179639765 C G TTN Missense_Mutation p.D2225H 0.21 TCGA-CN-4723-01 2 179650577 179650577 G A TTN Nonsense_Mutation p.Q790* 0.32 TCGA-CN-4723-01 2 189864098 189864098 G A COL3A1 Missense_Mutation p.E704K 0.22 unknown(0) TCGA-CN-4723-01 2 190927053 190927053 C G MSTN Silent p.L90L 0.08 TCGA-CN-4723-01 2 191929550 191929550 G A STAT4 Silent p.L255L 0.21 TCGA-CN-4723-01 2 196661353 196661353 G A DNAH7 Nonsense_Mutation p.Q3488* 0.20 TCGA-CN-4723-01 2 202025277 202025277 G A CFLAR Missense_Mutation p.D306N 0.22 deleterious(0.01) probably_damaging(1) TCGA-CN-4723-01 2 204143351 204143351 G T CYP20A1 Missense_Mutation p.R245S 0.12 tolerated(0.25) benign(0.008) TCGA-CN-4723-01 2 204143376 204143376 G C CYP20A1 Missense_Mutation p.D254H 0.12 deleterious(0) probably_damaging(0.997) TCGA-CN-4723-01 2 207413038 207413038 C T ADAM23 Missense_Mutation p.S276F 0.26 tolerated(0.11) benign(0.319) TCGA-CN-4723-01 2 20818831 20818831 C T HS1BP3 Silent p.Q365Q 0.21 TCGA-CN-4723-01 2 208477997 208477997 C T METTL21A Missense_Mutation p.D144N 0.31 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 2 211518779 211518779 G C CPS1 Missense_Mutation p.E1177Q 0.17 tolerated(0.34) benign(0.026) TCGA-CN-4723-01 2 212530143 212530143 T C ERBB4 Silent p.K592K 0.25 TCGA-CN-4723-01 2 219127711 219127711 C G GPBAR1 Silent p.V88V 0.22 TCGA-CN-4723-01 2 219529908 219529908 C G RNF25 Silent p.L212L 0.30 TCGA-CN-4723-01 2 219538430 219538430 G A STK36 Missense_Mutation p.R56Q 0.17 deleterious(0.04) benign(0.055) TCGA-CN-4723-01 2 220309772 220309772 G C SPEG Missense_Mutation p.R235P 0.31 benign(0.162) TCGA-CN-4723-01 2 223489148 223489148 G A FARSB Missense_Mutation p.S338L 0.18 deleterious(0.01) probably_damaging(0.928) TCGA-CN-4723-01 2 225449761 225449761 C T CUL3 5'UTR 0.33 TCGA-CN-4723-01 2 228128542 228128542 G C COL4A3 Silent p.L399L 0.16 TCGA-CN-4723-01 2 233635840 233635840 A G KCNJ13 Missense_Mutation p.L78P 0.20 deleterious(0) probably_damaging(0.949) TCGA-CN-4723-01 2 234094512 234094512 G C INPP5D Missense_Mutation p.E755Q 0.26 deleterious(0.01) possibly_damaging(0.839) TCGA-CN-4723-01 2 234591192 234591192 C T UGT1A7 Silent p.F203F 0.29 TCGA-CN-4723-01 2 234669410 234669410 C T UGT1A8 Intron 0.31 TCGA-CN-4723-01 2 236949416 236949416 G A AGAP1 Missense_Mutation p.E608K 0.20 deleterious(0.02) benign(0.364) TCGA-CN-4723-01 2 239307566 239307566 C G TRAF3IP1 3'UTR 0.28 TCGA-CN-4723-01 2 239342304 239342304 C T ASB1 Silent p.L53L 0.28 TCGA-CN-4723-01 2 241534074 241534074 C G CAPN10 Silent p.L315L 0.14 TCGA-CN-4723-01 2 24440837 24440837 C G ITSN2 Missense_Mutation p.E1249Q 0.30 deleterious(0) unknown(0) TCGA-CN-4723-01 2 24985573 24985573 G A NCOA1 Silent p.L1361L 0.05 TCGA-CN-4723-01 2 25472531 25472531 C T DNMT3A Intron 0.24 TCGA-CN-4723-01 2 27305913 27305913 C G EMILIN1 Missense_Mutation p.Q492E 0.22 benign(0.002) TCGA-CN-4723-01 2 27481696 27481696 C G SLC30A3 Missense_Mutation p.E68Q 0.26 tolerated(0.09) benign(0.118) TCGA-CN-4723-01 2 27665754 27665754 C T KRTCAP3 Missense_Mutation p.L87F 0.41 tolerated(0.17) benign(0.013) TCGA-CN-4723-01 2 28741373 28741373 T C PLB1 Missense_Mutation p.L53S 0.32 tolerated(0.11) benign(0.007) TCGA-CN-4723-01 2 33752314 33752314 G A RASGRP3 Silent p.L306L 0.14 TCGA-CN-4723-01 2 38179071 38179071 G A RMDN2 Missense_Mutation p.R238K 0.18 tolerated_low_confidence(0.07) benign(0.086) TCGA-CN-4723-01 2 39053158 39053158 C G DHX57 Missense_Mutation p.E949Q 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-CN-4723-01 2 43452225 43452225 C G ZFP36L2 Missense_Mutation p.D240H 0.25 deleterious(0.04) possibly_damaging(0.586) TCGA-CN-4723-01 2 44079754 44079754 C A ABCG8 Missense_Mutation p.D237E 0.31 deleterious(0) probably_damaging(0.997) TCGA-CN-4723-01 2 44161341 44161341 C T LRPPRC Silent p.K908K 0.15 TCGA-CN-4723-01 2 44549940 44549940 C G PREPL Silent p.L650L 0.29 TCGA-CN-4723-01 2 48698496 48698496 C T PPP1R21 Nonsense_Mutation p.Q360* 0.22 TCGA-CN-4723-01 2 48809196 48809196 C G STON1-GTF2A1L Nonsense_Mutation p.S475* 0.22 TCGA-CN-4723-01 2 51254859 51254859 G C NRXN1 Missense_Mutation p.R185G 0.23 tolerated(0.12) benign(0.068) TCGA-CN-4723-01 2 63349039 63349039 C T WDPCP 3'UTR 0.41 TCGA-CN-4723-01 2 73470151 73470151 C G CCT7 Nonsense_Mutation p.S96* 0.24 TCGA-CN-4723-01 2 73651682 73651682 C T ALMS1 Nonsense_Mutation p.Q297* 0.27 TCGA-CN-4723-01 2 96690536 96690536 G T GPAT2 Silent p.L471L 0.24 TCGA-CN-4723-01 2 96690561 96690561 G T GPAT2 Missense_Mutation p.T463K 0.22 deleterious(0.01) possibly_damaging(0.742) TCGA-CN-4723-01 3 100976587 100976587 G T IMPG2 Missense_Mutation p.F313L 0.12 tolerated(0.06) benign(0.186) TCGA-CN-4723-01 3 10291085 10291085 G A TATDN2 Silent p.R67R 0.44 TCGA-CN-4723-01 3 107520004 107520004 G C BBX Missense_Mutation p.D872H 0.41 deleterious(0.01) possibly_damaging(0.841) TCGA-CN-4723-01 3 107520042 107520042 G C BBX Silent p.R884R 0.46 TCGA-CN-4723-01 3 108326985 108326985 G C DZIP3 Missense_Mutation p.E28Q 0.20 deleterious_low_confidence(0.01) benign(0.022) TCGA-CN-4723-01 3 108393015 108393015 C G DZIP3 Missense_Mutation p.H894D 0.18 tolerated(0.18) benign(0.008) TCGA-CN-4723-01 3 108746617 108746617 A T MORC1 Missense_Mutation p.L562Q 0.03 deleterious(0) possibly_damaging(0.449) TCGA-CN-4723-01 3 108812388 108812388 C T MORC1 Missense_Mutation p.G195D 0.45 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 3 113172409 113172409 G C SPICE1 Missense_Mutation p.I682M 0.42 tolerated(0.05) benign(0.223) TCGA-CN-4723-01 3 113286437 113286437 C T SIDT1 Missense_Mutation p.S132L 0.44 tolerated(0.72) benign(0.019) TCGA-CN-4723-01 3 119236098 119236098 G C TIMMDC1 Missense_Mutation p.E215Q 0.03 deleterious(0) possibly_damaging(0.844) TCGA-CN-4723-01 3 119325723 119325723 C T PLA1A Missense_Mutation p.S59L 0.16 tolerated(0.29) benign(0.021) TCGA-CN-4723-01 3 119624670 119624670 C T GSK3B Missense_Mutation p.E249K 0.41 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 3 120118774 120118774 C T FSTL1 Missense_Mutation p.E280K 0.36 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CN-4723-01 3 122447299 122447299 C T PARP14 Missense_Mutation p.S1754L 0.20 tolerated(0.07) possibly_damaging(0.713) TCGA-CN-4723-01 3 122631079 122631079 C G SEMA5B Missense_Mutation p.E1000Q 0.53 tolerated(0.21) benign(0.36) TCGA-CN-4723-01 3 124732246 124732246 G C HEG1 Missense_Mutation p.S726C 0.19 deleterious(0) probably_damaging(0.95) TCGA-CN-4723-01 3 124951513 124951513 G C ZNF148 Nonsense_Mutation p.S686* 0.20 TCGA-CN-4723-01 3 126736358 126736358 C - PLXNA1 Frame_Shift_Del p.P1123Rfs*41 0.31 TCGA-CN-4723-01 3 130686024 130686024 G C ATP2C1 Silent p.V420V 0.17 TCGA-CN-4723-01 3 131404721 131404721 C T CPNE4 Missense_Mutation p.E197K 0.15 deleterious(0) benign(0.253) TCGA-CN-4723-01 3 138178802 138178802 C T ESYT3 Missense_Mutation p.R222W 0.26 deleterious(0) possibly_damaging(0.863) TCGA-CN-4723-01 3 142151555 142151555 C G XRN1 Missense_Mutation p.D86H 0.35 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 3 142681653 142681653 G C PAQR9 Missense_Mutation p.L176V 0.08 tolerated(0.18) probably_damaging(0.987) TCGA-CN-4723-01 3 145804659 145804659 C T PLOD2 Missense_Mutation p.D348N 0.30 tolerated(0.19) benign(0.01) TCGA-CN-4723-01 3 146173093 146173093 C T PLSCR2 Missense_Mutation p.R158Q 0.16 tolerated(0.5) benign(0.064) TCGA-CN-4723-01 3 151155740 151155740 C T IGSF10 Silent p.V2203V 0.37 TCGA-CN-4723-01 3 157820574 157820574 C T SHOX2 Missense_Mutation p.E174K 0.14 deleterious(0) probably_damaging(0.958) TCGA-CN-4723-01 3 160000298 160000298 C G IFT80 Missense_Mutation p.R495P 0.08 tolerated(0.29) benign(0.002) TCGA-CN-4723-01 3 17056235 17056235 C T PLCL2 Silent p.L824L 0.43 TCGA-CN-4723-01 3 173998755 173998755 T C NLGN1 Missense_Mutation p.C712R 0.53 tolerated(0.65) probably_damaging(0.992) TCGA-CN-4723-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.15 deleterious(0.02) probably_damaging(0.959) TCGA-CN-4723-01 3 179118966 179118966 G C GNB4 3'UTR 0.29 TCGA-CN-4723-01 3 179123134 179123134 C G GNB4 Missense_Mutation p.D254H 0.30 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 3 179533749 179533749 C G PEX5L Missense_Mutation p.G328A 0.10 deleterious(0.04) benign(0.049) TCGA-CN-4723-01 3 179597738 179597738 C G PEX5L Missense_Mutation p.E162Q 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.645) TCGA-CN-4723-01 3 183756393 183756393 C T HTR3D Silent p.L372L 0.06 TCGA-CN-4723-01 3 183777329 183777329 G A HTR3C Missense_Mutation p.E276K 0.15 tolerated(0.42) benign(0.021) TCGA-CN-4723-01 3 183777427 183777427 C T HTR3C Silent p.I308I 0.11 TCGA-CN-4723-01 3 183896864 183896864 G C AP2M1 Missense_Mutation p.E98D 0.12 tolerated(0.09) benign(0.025) TCGA-CN-4723-01 3 184026289 184026289 G A PSMD2 Silent p.Q826Q 0.35 TCGA-CN-4723-01 3 184033995 184033995 C T EIF4G1 Nonsense_Mutation p.Q46* 0.10 TCGA-CN-4723-01 3 185198141 185198141 G A MAP3K13 Missense_Mutation p.D875N 0.28 tolerated_low_confidence(0.36) benign(0) TCGA-CN-4723-01 3 186038305 186038305 G T DGKG 5'UTR 0.16 TCGA-CN-4723-01 3 193220359 193220359 C T ATP13A4 Missense_Mutation p.G102S 0.61 tolerated(0.68) benign(0.055) TCGA-CN-4723-01 3 194140610 194140610 G A ATP13A3 Nonsense_Mutation p.Q1134* 0.20 TCGA-CN-4723-01 3 196656542 196656542 C G SENP5 Silent p.V715V 0.27 TCGA-CN-4723-01 3 197420604 197420604 C T KIAA0226 Missense_Mutation p.D590N 0.18 deleterious(0.02) benign(0.026) TCGA-CN-4723-01 3 39184825 39184825 G C CSRNP1 Silent p.L497L 0.44 TCGA-CN-4723-01 3 47045664 47045664 C T NBEAL2 Silent p.I1993I 0.53 TCGA-CN-4723-01 3 49149116 49149116 G T USP19 Missense_Mutation p.Q1010K 0.53 tolerated(0.91) benign(0.027) TCGA-CN-4723-01 3 49466543 49466543 C T NICN1 Missense_Mutation p.E44K 0.42 tolerated(0.22) benign(0.072) TCGA-CN-4723-01 3 50145726 50145726 C G RBM5 Nonsense_Mutation p.S394* 0.41 TCGA-CN-4723-01 3 52240616 52240616 C T ALAS1 Silent p.N338N 0.43 TCGA-CN-4723-01 3 53757550 53757550 C G CACNA1D Missense_Mutation p.L606V 0.04 deleterious(0.02) probably_damaging(0.995) TCGA-CN-4723-01 3 63982084 63982084 G A ATXN7 Silent p.V862V 0.31 TCGA-CN-4723-01 3 86116000 86116000 C T CADM2 3'Flank 0.35 TCGA-CN-4723-01 3 9074387 9074387 G A SRGAP3 Missense_Mutation p.L496F 0.53 tolerated(0.7) benign(0.085) TCGA-CN-4723-01 3 9783766 9783766 C T BRPF1 Missense_Mutation p.R638C 0.43 deleterious(0) probably_damaging(0.998) TCGA-CN-4723-01 4 100006310 100006310 C T ADH5 Missense_Mutation p.E24K 0.61 deleterious(0.02) benign(0.032) TCGA-CN-4723-01 4 1018938 1018938 G T FGFRL1 Missense_Mutation p.A440S 0.11 tolerated(1) benign(0.002) TCGA-CN-4723-01 4 104054926 104054926 G A CENPE Nonsense_Mutation p.Q2216* 0.26 TCGA-CN-4723-01 4 114280341 114280341 G C ANK2 Missense_Mutation p.E3523Q 0.27 possibly_damaging(0.625) TCGA-CN-4723-01 4 115578003 115578003 C G UGT8 Intron 0.36 TCGA-CN-4723-01 4 119256647 119256647 G C PRSS12 Silent p.V267V 0.18 TCGA-CN-4723-01 4 120419875 120419875 C G PDE5A Missense_Mutation p.E837Q 0.27 tolerated(0.15) benign(0.016) TCGA-CN-4723-01 4 123167863 123167863 C T KIAA1109 Missense_Mutation p.S1737L 0.19 probably_damaging(0.996) TCGA-CN-4723-01 4 123245661 123245661 G A KIAA1109 Missense_Mutation p.R3625K 0.17 possibly_damaging(0.759) TCGA-CN-4723-01 4 126329825 126329825 C T FAT4 Silent p.F1932F 0.24 TCGA-CN-4723-01 4 126411784 126411784 G C FAT4 Missense_Mutation p.E4603Q 0.22 probably_damaging(0.99) TCGA-CN-4723-01 4 128626859 128626859 C G INTU Missense_Mutation p.I560M 0.08 deleterious(0) benign(0.131) TCGA-CN-4723-01 4 128863250 128863250 G C MFSD8 Missense_Mutation p.S168C 0.16 deleterious(0) possibly_damaging(0.726) TCGA-CN-4723-01 4 134111385 134111385 C G PCDH10 3'UTR 0.21 TCGA-CN-4723-01 4 142949879 142949879 G A INPP4B 3'UTR 0.27 TCGA-CN-4723-01 4 147741384 147741384 C G TTC29 Missense_Mutation p.E332Q 0.11 deleterious(0) probably_damaging(0.962) TCGA-CN-4723-01 4 151186875 151186875 C A LRBA Nonstop_Mutation p.*2864Lext*2 0.32 TCGA-CN-4723-01 4 155155862 155155862 G - DCHS2 Frame_Shift_Del p.Y2860Tfs*10 0.20 TCGA-CN-4723-01 4 159568311 159568311 G A RXFP1 Missense_Mutation p.E572K 0.24 deleterious(0.03) benign(0.142) TCGA-CN-4723-01 4 169013718 169013718 G C ANXA10 5'UTR 0.28 TCGA-CN-4723-01 4 174449901 174449901 C T HAND2 Silent p.K180K 0.18 TCGA-CN-4723-01 4 174449906 174449906 C A HAND2 Nonsense_Mutation p.E179* 0.18 TCGA-CN-4723-01 4 186556511 186556511 C T SORBS2 Intron 0.25 TCGA-CN-4723-01 4 39184062 39184062 C G WDR19 5'UTR 0.36 TCGA-CN-4723-01 4 39233560 39233560 C T WDR19 Missense_Mutation p.S709F 0.27 deleterious(0) possibly_damaging(0.559) TCGA-CN-4723-01 4 52860790 52860790 C T LRRC66 Missense_Mutation p.E800K 0.27 deleterious(0.04) probably_damaging(0.957) TCGA-CN-4723-01 4 53731941 53731941 C A RASL11B Missense_Mutation p.S239Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 4 55136804 55136804 C T PDGFRA Nonsense_Mutation p.R376* 0.21 TCGA-CN-4723-01 4 56225583 56225583 C T SRD5A3 Silent p.L98L 0.26 TCGA-CN-4723-01 4 56847543 56847543 G C CEP135 Missense_Mutation p.E593Q 0.24 tolerated(0.05) benign(0.047) TCGA-CN-4723-01 4 6114560 6114560 C G JAKMIP1 Silent p.R6R 0.35 TCGA-CN-4723-01 4 651154 651154 C T PDE6B Silent p.F424F 0.35 TCGA-CN-4723-01 4 70361538 70361538 C T UGT2B4 Silent p.L14L 0.27 TCGA-CN-4723-01 4 70512724 70512724 G C UGT2A1 Missense_Mutation p.F213L 0.22 tolerated(0.24) benign(0.009) TCGA-CN-4723-01 4 72634073 72634073 G C GC Missense_Mutation p.S88C 0.26 deleterious(0) possibly_damaging(0.874) TCGA-CN-4723-01 4 79321968 79321968 C T FRAS1 Silent p.I1352I 0.25 TCGA-CN-4723-01 4 81188026 81188026 C T FGF5 Silent p.L16L 0.21 TCGA-CN-4723-01 4 84234362 84234362 C G HPSE Missense_Mutation p.R193T 0.36 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 4 85617224 85617224 G C WDFY3 Missense_Mutation p.L2934V 0.25 deleterious(0) probably_damaging(0.997) TCGA-CN-4723-01 4 85617288 85617288 G C WDFY3 Missense_Mutation p.D2912E 0.23 deleterious(0) probably_damaging(0.992) TCGA-CN-4723-01 4 86916572 86916572 G A ARHGAP24 Missense_Mutation p.E589K 0.28 deleterious(0.02) possibly_damaging(0.87) TCGA-CN-4723-01 4 89421102 89421102 G C HERC5 Missense_Mutation p.E824Q 0.21 deleterious(0.01) probably_damaging(0.95) TCGA-CN-4723-01 4 89618627 89618627 C G NAP1L5 Missense_Mutation p.K93N 0.33 tolerated(0.07) benign(0.285) TCGA-CN-4723-01 4 955487 955487 G C DGKQ Missense_Mutation p.I817M 0.31 deleterious(0.01) probably_damaging(0.97) TCGA-CN-4723-01 4 955492 955492 A G DGKQ Missense_Mutation p.F816L 0.31 tolerated(0.12) possibly_damaging(0.46) TCGA-CN-4723-01 4 9784235 9784235 A G DRD5 Silent p.P194P 0.42 TCGA-CN-4723-01 5 109181672 109181672 C G MAN2A1 Missense_Mutation p.S936C 0.03 deleterious(0) probably_damaging(0.963) TCGA-CN-4723-01 5 110836745 110836745 C G STARD4 Missense_Mutation p.D118H 0.19 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 5 111754764 111754764 G C EPB41L4A 5'UTR 0.26 TCGA-CN-4723-01 5 112177508 112177508 G A APC Missense_Mutation p.G2073S 0.30 benign(0) TCGA-CN-4723-01 5 112179224 112179224 T C APC Missense_Mutation p.Y2645H 0.37 possibly_damaging(0.904) TCGA-CN-4723-01 5 114961327 114961327 G C TMED7-TICAM2 Missense_Mutation p.Q55E 0.26 tolerated_low_confidence(0.26) benign(0.209) TCGA-CN-4723-01 5 115361749 115361749 G A AQPEP Silent p.K969K 0.04 TCGA-CN-4723-01 5 118176651 118176651 G C DTWD2 Silent p.L286L 0.12 TCGA-CN-4723-01 5 120021840 120021840 G A PRR16 Silent p.L94L 0.33 TCGA-CN-4723-01 5 123983566 123983566 C A ZNF608 Silent p.G837G 0.25 TCGA-CN-4723-01 5 125928409 125928409 C G ALDH7A1 Missense_Mutation p.D87H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4723-01 5 125939416 125939416 G C PHAX Missense_Mutation p.R84P 0.13 deleterious(0) probably_damaging(0.974) TCGA-CN-4723-01 5 134344589 134344589 G T CATSPER3 Missense_Mutation p.R245L 0.26 deleterious(0) probably_damaging(0.995) TCGA-CN-4723-01 5 134678905 134678905 G A C5orf66 Missense_Mutation p.E63K 0.22 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-CN-4723-01 5 137275949 137275949 G C FAM13B Missense_Mutation p.L905V 0.28 deleterious(0) probably_damaging(0.997) TCGA-CN-4723-01 5 140026901 140026901 C T NDUFA2 Missense_Mutation p.D50N 0.07 tolerated(0.41) benign(0.005) TCGA-CN-4723-01 5 140348753 140348753 C G PCDHAC2 Nonsense_Mutation p.S801* 0.13 TCGA-CN-4723-01 5 140389209 140389209 C G PCDHAC1 Intron 0.16 TCGA-CN-4723-01 5 140474836 140474836 C G PCDHB2 Missense_Mutation p.F154L 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.521) TCGA-CN-4723-01 5 140481673 140481673 A G PCDHB3 Silent p.S480S 0.25 TCGA-CN-4723-01 5 140604130 140604130 G A PCDHB14 Silent p.S351S 0.31 TCGA-CN-4723-01 5 140720878 140720878 C T PCDHGA2 Silent p.I780I 0.26 TCGA-CN-4723-01 5 140732048 140732048 G A PCDHGB1 Missense_Mutation p.E741K 0.17 tolerated(0.06) possibly_damaging(0.572) TCGA-CN-4723-01 5 140755614 140755614 C T PCDHGA6 Missense_Mutation p.S655F 0.12 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-CN-4723-01 5 140768392 140768392 C A PCDHGB4 Missense_Mutation p.S314Y 0.53 deleterious(0.02) probably_damaging(0.942) TCGA-CN-4723-01 5 141059109 141059109 C T ARAP3 Intron 0.39 TCGA-CN-4723-01 5 143544999 143544999 C T YIPF5 Missense_Mutation p.E94K 0.14 deleterious(0) probably_damaging(0.947) TCGA-CN-4723-01 5 150664219 150664219 C T SLC36A3 Silent p.L295L 0.21 TCGA-CN-4723-01 5 153755896 153755896 C T GALNT10 Nonsense_Mutation p.R210* 0.24 TCGA-CN-4723-01 5 153835558 153835558 G C SAP30L Missense_Mutation p.Q174H 0.18 tolerated(0.35) benign(0.001) TCGA-CN-4723-01 5 156381666 156381666 A T TIMD4 Missense_Mutation p.W54R 0.30 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 5 157078561 157078561 C G SOX30 Missense_Mutation p.G176R 0.31 deleterious_low_confidence(0.03) benign(0.062) TCGA-CN-4723-01 5 167627019 167627019 G T TENM2 Missense_Mutation p.V1105F 0.20 deleterious(0) possibly_damaging(0.898) TCGA-CN-4723-01 5 167812224 167812224 C G WWC1 Missense_Mutation p.Q80E 0.30 deleterious(0) possibly_damaging(0.511) TCGA-CN-4723-01 5 169020507 169020507 G C SPDL1 Missense_Mutation p.E162D 0.18 deleterious(0) benign(0.171) TCGA-CN-4723-01 5 169810677 169810677 C A KCNMB1 Intron 0.30 TCGA-CN-4723-01 5 178771042 178771042 C T ADAMTS2 Missense_Mutation p.R87H 0.31 tolerated(0.08) probably_damaging(0.995) TCGA-CN-4723-01 5 179696288 179696288 G A MAPK9 Missense_Mutation p.H82Y 0.04 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 5 180338384 180338384 G C BTNL8 Missense_Mutation p.R148T 0.25 deleterious(0.01) benign(0.019) TCGA-CN-4723-01 5 180377003 180377003 C G BTNL8 Missense_Mutation p.S321C 0.24 tolerated(0.1) probably_damaging(0.921) TCGA-CN-4723-01 5 2755246 2755246 C T C5orf38 3'UTR 0.18 TCGA-CN-4723-01 5 32037440 32037440 G A PDZD2 Missense_Mutation p.R504H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 5 32789775 32789775 C T AC026703.1 Missense_Mutation p.L90F 0.20 possibly_damaging(0.765) TCGA-CN-4723-01 5 35010167 35010167 C A AGXT2 Nonsense_Mutation p.E426* 0.19 TCGA-CN-4723-01 5 35910094 35910094 G A CAPSL Silent p.I133I 0.22 TCGA-CN-4723-01 5 37180116 37180116 G C C5orf42 Intron 0.16 TCGA-CN-4723-01 5 37302930 37302930 G C NUP155 Nonsense_Mutation p.S1133* 0.20 TCGA-CN-4723-01 5 39364534 39364534 G C C9 Missense_Mutation p.I11M 0.18 deleterious(0.01) possibly_damaging(0.622) TCGA-CN-4723-01 5 40681095 40681095 C A PTGER4 5'UTR 0.24 TCGA-CN-4723-01 5 43659377 43659377 C T NNT Silent p.L853L 0.23 TCGA-CN-4723-01 5 45262789 45262789 A T HCN1 Missense_Mutation p.I636N 0.24 deleterious(0.02) benign(0.027) TCGA-CN-4723-01 5 45396681 45396681 G C HCN1 Silent p.V381V 0.28 TCGA-CN-4723-01 5 50073932 50073932 T G PARP8 Missense_Mutation p.I183S 0.26 deleterious(0) benign(0.418) TCGA-CN-4723-01 5 52367846 52367846 G A ITGA2 Missense_Mutation p.E772K 0.25 deleterious(0) possibly_damaging(0.493) TCGA-CN-4723-01 5 54569133 54569133 T A DHX29 Silent p.P921P 0.27 TCGA-CN-4723-01 5 5461061 5461061 G A KIAA0947 Silent p.R538R 0.21 TCGA-CN-4723-01 5 61779927 61779927 C G IPO11 Missense_Mutation p.S411C 0.04 deleterious(0.02) possibly_damaging(0.698) TCGA-CN-4723-01 5 64910040 64910040 G C TRIM23 Nonsense_Mutation p.S84* 0.32 TCGA-CN-4723-01 5 6632078 6632078 C G NSUN2 Missense_Mutation p.E89D 0.18 tolerated(0.19) benign(0.117) TCGA-CN-4723-01 5 66479408 66479408 C G CD180 Missense_Mutation p.Q421H 0.25 tolerated(0.24) benign(0) TCGA-CN-4723-01 5 73205267 73205267 G C ARHGEF28 Missense_Mutation p.E1398Q 0.18 deleterious(0.03) benign(0.244) TCGA-CN-4723-01 5 74892778 74892778 G A POLK Missense_Mutation p.E754K 0.06 tolerated(0.24) benign(0.043) TCGA-CN-4723-01 5 76700610 76700610 C T PDE8B Nonsense_Mutation p.R426* 0.18 TCGA-CN-4723-01 5 79034791 79034791 C T CMYA5 Silent p.I3401I 0.23 TCGA-CN-4723-01 5 79366996 79366996 T A THBS4 Missense_Mutation p.D571E 0.21 deleterious(0.01) benign(0.387) TCGA-CN-4723-01 5 81601072 81601072 G C ATP6AP1L 5'UTR 0.26 TCGA-CN-4723-01 5 86564372 86564372 G T RASA1 Missense_Mutation p.R35L 0.36 deleterious_low_confidence(0) benign(0.25) TCGA-CN-4723-01 5 86708623 86708623 G A CCNH 5'UTR 0.24 TCGA-CN-4723-01 5 89705509 89705509 G A CETN3 5'UTR 0.23 TCGA-CN-4723-01 5 89981767 89981767 G C GPR98 Missense_Mutation p.D2149H 0.17 probably_damaging(0.998) TCGA-CN-4723-01 5 9044561 9044561 G T SEMA5A Nonsense_Mutation p.S1010* 0.22 TCGA-CN-4723-01 5 94784011 94784011 G C FAM81B Missense_Mutation p.Q356H 0.13 tolerated(0.54) benign(0.036) TCGA-CN-4723-01 5 96219594 96219594 G A ERAP2 Missense_Mutation p.R225Q 0.18 tolerated(0.08) probably_damaging(0.957) TCGA-CN-4723-01 6 11201164 11201164 C G NEDD9 Intron 0.43 TCGA-CN-4723-01 6 112508744 112508744 C T LAMA4 Missense_Mutation p.E292K 0.32 tolerated(0.08) benign(0.228) TCGA-CN-4723-01 6 116442593 116442593 C G COL10A1 Missense_Mutation p.G229A 0.17 deleterious(0) unknown(0) TCGA-CN-4723-01 6 117232167 117232167 C T RFX6 Nonsense_Mutation p.Q248* 0.19 TCGA-CN-4723-01 6 119345573 119345573 C G FAM184A Missense_Mutation p.D189H 0.19 deleterious(0) possibly_damaging(0.569) TCGA-CN-4723-01 6 123126144 123126144 G C SMPDL3A Missense_Mutation p.D277H 0.03 deleterious(0.03) possibly_damaging(0.653) TCGA-CN-4723-01 6 129959708 129959708 C G ARHGAP18 Missense_Mutation p.G128A 0.32 tolerated(0.46) benign(0.008) TCGA-CN-4723-01 6 130425591 130425591 C G L3MBTL3 Nonsense_Mutation p.S586* 0.32 TCGA-CN-4723-01 6 131931197 131931197 G A MED23 Missense_Mutation p.L356F 0.27 deleterious(0) probably_damaging(0.998) TCGA-CN-4723-01 6 136960771 136960771 G C MAP3K5 Missense_Mutation p.S615C 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-CN-4723-01 6 137525504 137525504 C T IFNGR1 Missense_Mutation p.V171M 0.21 tolerated(0.25) benign(0.097) TCGA-CN-4723-01 6 142409829 142409829 C T NMBR 5'UTR 0.20 TCGA-CN-4723-01 6 144262488 144262488 C G PLAGL1 3'UTR 0.21 TCGA-CN-4723-01 6 144808819 144808819 G C UTRN Missense_Mutation p.D1320H 0.27 deleterious(0.04) benign(0.299) TCGA-CN-4723-01 6 146673564 146673564 C T GRM1 Silent p.I455I 0.19 TCGA-CN-4723-01 6 151757574 151757574 G C RMND1 Intron 0.27 TCGA-CN-4723-01 6 152686067 152686067 C G SYNE1 Missense_Mutation p.E3354Q 0.22 possibly_damaging(0.492) TCGA-CN-4723-01 6 152686096 152686096 C G SYNE1 Missense_Mutation p.G3344A 0.23 possibly_damaging(0.628) TCGA-CN-4723-01 6 15496939 15496939 G C JARID2 Missense_Mutation p.E495Q 0.51 tolerated_low_confidence(0.18) possibly_damaging(0.764) TCGA-CN-4723-01 6 15663097 15663097 G T DTNBP1 Missense_Mutation p.L2M 0.51 deleterious(0) probably_damaging(0.997) TCGA-CN-4723-01 6 159654085 159654085 C T FNDC1 Silent p.S847S 0.29 TCGA-CN-4723-01 6 161157959 161157959 G A PLG Silent p.P574P 0.31 TCGA-CN-4723-01 6 161470020 161470020 C G MAP3K4 Nonsense_Mutation p.S239* 0.22 TCGA-CN-4723-01 6 163986921 163986921 A G QKI Intron 0.26 TCGA-CN-4723-01 6 165693562 165693562 C G C6orf118 Missense_Mutation p.R465T 0.30 tolerated_low_confidence(0.16) possibly_damaging(0.765) TCGA-CN-4723-01 6 166918077 166918077 G A RPS6KA2 Silent p.V169V 0.29 TCGA-CN-4723-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.27 TCGA-CN-4723-01 6 26124521 26124521 C T HIST1H2AC Missense_Mutation p.R21C 0.60 deleterious_low_confidence(0) unknown(0) TCGA-CN-4723-01 6 26385375 26385375 C T BTN2A2 Missense_Mutation p.S76F 0.44 deleterious(0.04) benign(0.248) TCGA-CN-4723-01 6 28097416 28097416 C T ZSCAN16 Silent p.F245F 0.44 TCGA-CN-4723-01 6 28297298 28297298 C T ZSCAN31 Missense_Mutation p.E55K 0.38 deleterious(0) probably_damaging(0.989) TCGA-CN-4723-01 6 28541483 28541483 C G SCAND3 Missense_Mutation p.R728T 0.48 deleterious_low_confidence(0) benign(0.096) TCGA-CN-4723-01 6 29080281 29080281 C G OR2J3 Missense_Mutation p.T205R 0.61 tolerated(0.09) benign(0.008) TCGA-CN-4723-01 6 31324214 31324214 G C HLA-B Missense_Mutation p.H117D 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CN-4723-01 6 31797593 31797593 C T HSPA1B Silent p.F622F 0.50 TCGA-CN-4723-01 6 31933627 31933627 C G SKIV2L Missense_Mutation p.S680C 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-CN-4723-01 6 32975985 32975985 C G HLA-DOA Missense_Mutation p.G46R 0.57 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 6 33135224 33135224 C G COL11A2 Silent p.L1281L 0.48 TCGA-CN-4723-01 6 33245746 33245746 G C B3GALT4 Missense_Mutation p.E184Q 0.53 tolerated(0.38) possibly_damaging(0.903) TCGA-CN-4723-01 6 33662853 33662853 C G ITPR3 Silent p.L2646L 0.38 TCGA-CN-4723-01 6 33995958 33995958 C T GRM4 Silent p.K876K 0.51 TCGA-CN-4723-01 6 42626426 42626426 G C UBR2 Missense_Mutation p.E1036Q 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-CN-4723-01 6 42626464 42626464 G C UBR2 Missense_Mutation p.Q1048H 0.38 deleterious(0) probably_damaging(0.996) TCGA-CN-4723-01 6 43015985 43015985 C T CUL7 Silent p.L774L 0.19 TCGA-CN-4723-01 6 43266316 43266316 G T SLC22A7 Missense_Mutation p.D74Y 0.36 deleterious(0) possibly_damaging(0.841) TCGA-CN-4723-01 6 44329585 44329585 G A SPATS1 Missense_Mutation p.E144K 0.21 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 6 46657053 46657053 G A TDRD6 Silent p.L396L 0.38 TCGA-CN-4723-01 6 50807940 50807940 G C TFAP2B Missense_Mutation p.E338Q 0.35 deleterious(0) possibly_damaging(0.574) TCGA-CN-4723-01 6 51938280 51938280 C T PKHD1 Missense_Mutation p.D170N 0.36 tolerated(0.56) benign(0.015) TCGA-CN-4723-01 6 52101728 52101728 C G IL17F 3'UTR 0.27 TCGA-CN-4723-01 6 52133882 52133882 A G MCM3 Splice_Site p.X701_splice 0.31 TCGA-CN-4723-01 6 55638959 55638959 G C BMP5 Missense_Mutation p.F305L 0.36 deleterious(0.01) possibly_damaging(0.728) TCGA-CN-4723-01 6 79944064 79944064 G C HMGN3 Intron 0.45 TCGA-CN-4723-01 6 80196747 80196747 C T LCA5 Missense_Mutation p.E690K 0.47 deleterious(0.01) possibly_damaging(0.864) TCGA-CN-4723-01 6 94129089 94129089 C T EPHA7 5'UTR 0.38 TCGA-CN-4723-01 6 97246864 97246864 G C GPR63 Silent p.L248L 0.47 TCGA-CN-4723-01 6 99282855 99282855 G T POU3F2 Nonsense_Mutation p.E36* 0.32 TCGA-CN-4723-01 7 100279772 100279772 C T GIGYF1 Missense_Mutation p.E950K 0.24 deleterious(0) probably_damaging(0.991) TCGA-CN-4723-01 7 100552961 100552961 C T MUC3A Nonsense_Mutation p.Q536* 0.07 TCGA-CN-4723-01 7 100677779 100677779 G A MUC17 Missense_Mutation p.E1028K 0.26 benign(0) TCGA-CN-4723-01 7 100683350 100683350 G A MUC17 Missense_Mutation p.E2885K 0.25 possibly_damaging(0.767) TCGA-CN-4723-01 7 100683466 100683466 T C MUC17 Silent p.P2923P 0.30 TCGA-CN-4723-01 7 100684033 100684033 C G MUC17 Silent p.V3112V 0.28 TCGA-CN-4723-01 7 100815677 100815677 C G NAT16 Missense_Mutation p.E265Q 0.20 tolerated(0.16) possibly_damaging(0.716) TCGA-CN-4723-01 7 102047920 102047920 G A PRKRIP1 Missense_Mutation p.M144I 0.34 tolerated(0.4) benign(0.072) TCGA-CN-4723-01 7 103014907 103014907 G A SLC26A5 Missense_Mutation p.S725L 0.27 tolerated(0.23) benign(0) TCGA-CN-4723-01 7 105624678 105624678 C T CDHR3 Silent p.F152F 0.15 TCGA-CN-4723-01 7 108204874 108204874 C G THAP5 Missense_Mutation p.V317L 0.21 deleterious(0.03) benign(0.236) TCGA-CN-4723-01 7 115580995 115580995 C G TFEC Intron 0.05 TCGA-CN-4723-01 7 117243763 117243763 G A CFTR Silent p.S945S 0.29 TCGA-CN-4723-01 7 119915729 119915729 G T KCND2 Missense_Mutation p.G348V 0.20 tolerated(0.05) probably_damaging(0.944) TCGA-CN-4723-01 7 137028320 137028320 G C PTN 5'UTR 0.24 TCGA-CN-4723-01 7 138235861 138235861 G A TRIM24 Silent p.V399V 0.21 TCGA-CN-4723-01 7 139572057 139572057 G C TBXAS1 Missense_Mutation p.R39T 0.28 tolerated(0.84) benign(0.006) TCGA-CN-4723-01 7 142143878 142143878 G C TRBV6-7 Missense_Mutation p.L40V 0.26 tolerated(0.06) benign(0.246) TCGA-CN-4723-01 7 143573509 143573509 C T FAM115A Missense_Mutation p.E65K 0.21 deleterious(0.02) probably_damaging(0.991) TCGA-CN-4723-01 7 144288620 144288620 C T TPK1 Missense_Mutation p.D133N 0.23 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 7 1486399 1486399 C G MICALL2 Silent p.L197L 0.09 TCGA-CN-4723-01 7 148895519 148895519 G A ZNF282 Missense_Mutation p.R87Q 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-CN-4723-01 7 149152780 149152780 C G ZNF777 Missense_Mutation p.E112Q 0.03 tolerated_low_confidence(0.13) benign(0.175) TCGA-CN-4723-01 7 149171704 149171704 G A ZNF746 Missense_Mutation p.T570I 0.19 deleterious(0.04) probably_damaging(0.986) TCGA-CN-4723-01 7 150845891 150845891 G C GBX1 Missense_Mutation p.Q293E 0.30 deleterious(0) benign(0.444) TCGA-CN-4723-01 7 150916225 150916225 C T ABCF2 Silent p.V314V 0.26 TCGA-CN-4723-01 7 156746954 156746954 C T NOM1 Missense_Mutation p.L424F 0.19 tolerated(0.05) benign(0.203) TCGA-CN-4723-01 7 156802973 156802973 C G MNX1 Missense_Mutation p.Q24H 0.19 deleterious(0.01) unknown(0) TCGA-CN-4723-01 7 156931979 156931979 G A UBE3C Missense_Mutation p.E5K 0.16 deleterious(0.01) possibly_damaging(0.77) TCGA-CN-4723-01 7 18624936 18624936 G T HDAC9 Nonsense_Mutation p.E19* 0.28 TCGA-CN-4723-01 7 21947813 21947813 C T CDCA7L Missense_Mutation p.E206K 0.32 tolerated(0.24) benign(0.007) TCGA-CN-4723-01 7 24703280 24703280 G A MPP6 Silent p.L241L 0.27 TCGA-CN-4723-01 7 31692488 31692488 G C CCDC129 Intron 0.42 TCGA-CN-4723-01 7 35242187 35242187 G T TBX20 Nonsense_Mutation p.S400* 0.24 TCGA-CN-4723-01 7 38785180 38785180 C G VPS41 Missense_Mutation p.E654Q 0.26 deleterious(0.05) benign(0.291) TCGA-CN-4723-01 7 40134276 40134276 C T CDK13 Silent p.L1412L 0.26 TCGA-CN-4723-01 7 45662289 45662289 G C ADCY1 Missense_Mutation p.E323Q 0.12 deleterious(0) probably_damaging(0.963) TCGA-CN-4723-01 7 48314889 48314889 G C ABCA13 Missense_Mutation p.E1876Q 0.25 possibly_damaging(0.642) TCGA-CN-4723-01 7 48315502 48315502 C G ABCA13 Missense_Mutation p.S2080C 0.22 probably_damaging(0.959) TCGA-CN-4723-01 7 51095705 51095705 G C COBL Missense_Mutation p.Q1030E 0.28 tolerated(0.43) benign(0.006) TCGA-CN-4723-01 7 53103598 53103598 C G POM121L12 Missense_Mutation p.I78M 0.17 deleterious(0.03) benign(0.001) TCGA-CN-4723-01 7 5340094 5340094 G C SLC29A4 Silent p.L417L 0.28 TCGA-CN-4723-01 7 5662575 5662575 G A RNF216 Silent p.V896V 0.27 TCGA-CN-4723-01 7 5662592 5662592 G C RNF216 Missense_Mutation p.L891V 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-CN-4723-01 7 66248715 66248715 G A KCTD7 Missense_Mutation p.E134K 0.31 deleterious(0.03) benign(0.078) TCGA-CN-4723-01 7 73523309 73523309 C G LIMK1 Silent p.L409L 0.38 TCGA-CN-4723-01 7 794332 794332 G A HEATR2 Silent p.V377V 0.28 TCGA-CN-4723-01 7 81603800 81603800 A C CACNA2D1 Missense_Mutation p.I675S 0.07 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 7 82474791 82474791 C T PCLO Silent p.A4614A 0.26 TCGA-CN-4723-01 7 82545543 82545543 G A PCLO Missense_Mutation p.S3920L 0.20 unknown(0) TCGA-CN-4723-01 7 86468181 86468181 G C GRM3 Missense_Mutation p.D451H 0.15 tolerated(0.06) benign(0.007) TCGA-CN-4723-01 7 86468291 86468291 A T GRM3 Silent p.A487A 0.29 TCGA-CN-4723-01 7 87195516 87195516 C G ABCB1 Missense_Mutation p.G191A 0.03 tolerated(0.87) benign(0.12) TCGA-CN-4723-01 7 87564431 87564431 C T ADAM22 Missense_Mutation p.S59L 0.22 tolerated(0.34) benign(0.001) TCGA-CN-4723-01 7 89749178 89749178 C T RP5-1121E10.2 Intron 0.31 TCGA-CN-4723-01 7 89906554 89906554 G C C7orf63 Missense_Mutation p.G354A 0.11 tolerated(0.14) benign(0.346) TCGA-CN-4723-01 7 912962 912962 C G SUN1 Silent p.V784V 0.23 TCGA-CN-4723-01 7 94049587 94049587 C T COL1A2 Missense_Mutation p.R708W 0.26 unknown(0) TCGA-CN-4723-01 7 94293385 94293385 C T PEG10 Missense_Mutation p.R173C 0.21 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 7 94881322 94881322 C G PPP1R9A Missense_Mutation p.Q849E 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-CN-4723-01 8 100654191 100654191 G T VPS13B Missense_Mutation p.Q1816H 0.15 tolerated(0.44) probably_damaging(0.948) TCGA-CN-4723-01 8 103289202 103289202 G A UBR5 Silent p.F2169F 0.21 TCGA-CN-4723-01 8 103323529 103323529 C G UBR5 Missense_Mutation p.E872Q 0.20 tolerated(0.05) probably_damaging(0.968) TCGA-CN-4723-01 8 10468185 10468185 G C RP1L1 Missense_Mutation p.F1141L 0.18 possibly_damaging(0.636) TCGA-CN-4723-01 8 110397821 110397821 T A PKHD1L1 Silent p.I177I 0.13 TCGA-CN-4723-01 8 110476619 110476619 G C PKHD1L1 Missense_Mutation p.D2520H 0.28 deleterious(0) possibly_damaging(0.78) TCGA-CN-4723-01 8 113301749 113301749 G A CSMD3 Missense_Mutation p.P2998L 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-CN-4723-01 8 113421233 113421233 C T CSMD3 Silent p.Q1808Q 0.27 TCGA-CN-4723-01 8 114290824 114290824 C T CSMD3 Missense_Mutation p.E171K 0.18 tolerated(0.38) benign(0.03) TCGA-CN-4723-01 8 118184876 118184876 G C SLC30A8 Missense_Mutation p.D356H 0.13 deleterious(0) probably_damaging(0.963) TCGA-CN-4723-01 8 124449572 124449572 G C WDYHV1 Missense_Mutation p.G169A 0.13 tolerated(1) benign(0.002) TCGA-CN-4723-01 8 125103812 125103812 G A FER1L6 Missense_Mutation p.E1514K 0.17 tolerated(0.08) benign(0.005) TCGA-CN-4723-01 8 125131944 125131944 C G FER1L6 Missense_Mutation p.F1829L 0.18 tolerated(1) benign(0.005) TCGA-CN-4723-01 8 13356866 13356866 C T DLC1 Missense_Mutation p.D239N 0.25 deleterious_low_confidence(0) benign(0.059) TCGA-CN-4723-01 8 139190891 139190891 C G FAM135B Missense_Mutation p.D306H 0.21 deleterious(0) probably_damaging(0.99) TCGA-CN-4723-01 8 141828403 141828403 G C PTK2 Missense_Mutation p.I280M 0.25 deleterious(0) probably_damaging(0.921) TCGA-CN-4723-01 8 143695306 143695306 G C ARC Silent p.V109V 0.14 TCGA-CN-4723-01 8 144899226 144899226 G C PUF60 Missense_Mutation p.L412V 0.15 tolerated(0.26) benign(0.008) TCGA-CN-4723-01 8 144940991 144940991 C T EPPK1 Missense_Mutation p.R2144K 0.16 benign(0.002) TCGA-CN-4723-01 8 144942429 144942435 GGAAGAG - EPPK1 Frame_Shift_Del p.L1663Rfs*50 0.14 TCGA-CN-4723-01 8 146107829 146107829 C G ZNF250 Missense_Mutation p.E252Q 0.14 deleterious(0) probably_damaging(0.963) TCGA-CN-4723-01 8 16850803 16850803 G T FGF20 Silent p.I138I 0.16 TCGA-CN-4723-01 8 21891774 21891774 G A NPM2 Silent p.A173A 0.07 TCGA-CN-4723-01 8 26238784 26238784 C G BNIP3L 5'Flank 0.32 TCGA-CN-4723-01 8 28321304 28321304 C G FBXO16 Missense_Mutation p.R56T 0.22 tolerated(0.06) benign(0.041) TCGA-CN-4723-01 8 30915892 30915892 C G WRN 5'UTR 0.33 TCGA-CN-4723-01 8 3226815 3226815 G C CSMD1 Missense_Mutation p.L954V 0.12 probably_damaging(0.971) TCGA-CN-4723-01 8 38005783 38005783 C T STAR Missense_Mutation p.E81K 0.38 tolerated(0.06) benign(0.131) TCGA-CN-4723-01 8 42611623 42611623 G A CHRNA6 Missense_Mutation p.P240L 0.33 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 8 43173738 43173738 C T POTEA RNA 0.18 TCGA-CN-4723-01 8 48776002 48776002 G A PRKDC Missense_Mutation p.S1902L 0.20 benign(0.076) TCGA-CN-4723-01 8 55538105 55538105 C G RP1 Missense_Mutation p.Q555E 0.15 tolerated(0.06) probably_damaging(0.967) TCGA-CN-4723-01 8 56015534 56015534 C T XKR4 Silent p.F162F 0.28 TCGA-CN-4723-01 8 63973741 63973741 C G TTPA 3'UTR 0.19 TCGA-CN-4723-01 8 67547415 67547415 G C VCPIP1 Nonsense_Mutation p.S997* 0.21 TCGA-CN-4723-01 8 70550802 70550802 G A SULF1 Missense_Mutation p.E784K 0.19 deleterious(0.02) benign(0.007) TCGA-CN-4723-01 8 71646743 71646743 C G XKR9 3'UTR 0.16 TCGA-CN-4723-01 8 72942205 72942205 C G TRPA1 Splice_Site p.X957_splice 0.22 TCGA-CN-4723-01 8 72981315 72981315 G A TRPA1 Silent p.F129F 0.11 TCGA-CN-4723-01 8 8560295 8560295 C A CLDN23 Silent p.L129L 0.38 TCGA-CN-4723-01 8 87151798 87151798 G C ATP6V0D2 Missense_Mutation p.E139Q 0.15 deleterious(0.03) possibly_damaging(0.821) TCGA-CN-4723-01 8 87242048 87242048 C G SLC7A13 Silent p.V153V 0.20 TCGA-CN-4723-01 8 87616352 87616352 G C CNGB3 Missense_Mutation p.L584V 0.20 deleterious(0) probably_damaging(0.991) TCGA-CN-4723-01 8 89053674 89053674 A C MMP16 3'UTR 0.20 TCGA-CN-4723-01 8 90926409 90926409 G C OSGIN2 Missense_Mutation p.E102Q 0.19 tolerated(0.51) benign(0.008) TCGA-CN-4723-01 8 90965508 90965508 G A NBN Silent p.F603F 0.20 TCGA-CN-4723-01 8 92032432 92032432 G A TMEM55A Silent p.L105L 0.16 TCGA-CN-4723-01 8 94767324 94767324 C G TMEM67 Missense_Mutation p.S61W 0.19 deleterious(0.04) possibly_damaging(0.648) TCGA-CN-4723-01 8 95683700 95683700 C T ESRP1 Missense_Mutation p.S418L 0.28 deleterious(0.01) possibly_damaging(0.756) TCGA-CN-4723-01 9 104192167 104192167 G A ALDOB Missense_Mutation p.S65F 0.26 deleterious(0) possibly_damaging(0.535) TCGA-CN-4723-01 9 107578492 107578492 C T ABCA1 Missense_Mutation p.E1224K 0.27 deleterious(0.03) benign(0.359) TCGA-CN-4723-01 9 109691062 109691062 G A ZNF462 Missense_Mutation p.M1623I 0.23 benign(0.001) TCGA-CN-4723-01 9 113168843 113168843 C G SVEP1 Missense_Mutation p.E3013Q 0.22 benign(0.001) TCGA-CN-4723-01 9 114304423 114304423 C G ZNF483 Nonsense_Mutation p.S403* 0.31 TCGA-CN-4723-01 9 114886646 114886646 G A SUSD1 Silent p.G259G 0.25 TCGA-CN-4723-01 9 123173693 123173693 G C CDK5RAP2 Missense_Mutation p.H1453D 0.03 deleterious(0.02) benign(0.007) TCGA-CN-4723-01 9 125642045 125642045 C G RC3H2 Missense_Mutation p.E401Q 0.23 tolerated(0.08) benign(0.043) TCGA-CN-4723-01 9 127998762 127998762 C T HSPA5 3'UTR 0.38 TCGA-CN-4723-01 9 128268677 128268677 C T MAPKAP1 Silent p.E326E 0.24 TCGA-CN-4723-01 9 131231605 131231605 G A ODF2 Missense_Mutation p.M131I 0.19 tolerated(0.05) benign(0.062) TCGA-CN-4723-01 9 134952852 134952852 G C MED27 Missense_Mutation p.Q109E 0.03 tolerated(0.25) benign(0.027) TCGA-CN-4723-01 9 135975860 135975860 C T RALGDS Intron 0.25 TCGA-CN-4723-01 9 136324093 136324093 C G ADAMTS13 Intron 0.21 TCGA-CN-4723-01 9 138719360 138719360 G A CAMSAP1 Silent p.F372F 0.22 TCGA-CN-4723-01 9 139417620 139417620 C G NOTCH1 Missense_Mutation p.D142H 0.32 deleterious(0.01) probably_damaging(0.966) TCGA-CN-4723-01 9 139909403 139909403 C T ABCA2 Missense_Mutation p.E1282K 0.32 tolerated(0.15) possibly_damaging(0.558) TCGA-CN-4723-01 9 140510009 140510009 C T C9orf37 3'UTR 0.33 TCGA-CN-4723-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.39 TCGA-CN-4723-01 9 32500912 32500912 C A DDX58 Missense_Mutation p.E44D 0.07 deleterious(0.03) possibly_damaging(0.579) TCGA-CN-4723-01 9 33366762 33366762 A T NFX1 Missense_Mutation p.T1059S 0.41 deleterious(0.03) possibly_damaging(0.512) TCGA-CN-4723-01 9 376246 376246 G A DOCK8 Missense_Mutation p.E716K 0.04 deleterious(0) probably_damaging(0.998) TCGA-CN-4723-01 9 37974647 37974647 C G SHB Missense_Mutation p.W342C 0.33 deleterious(0) probably_damaging(0.999) TCGA-CN-4723-01 9 69423576 69423576 G C ANKRD20A4 Silent p.V624V 0.22 TCGA-CN-4723-01 9 71094415 71094415 T C PGM5 Missense_Mutation p.V414A 0.27 deleterious(0.03) probably_damaging(0.99) TCGA-CN-4723-01 9 71509489 71509489 G A PIP5K1B Missense_Mutation p.E236K 0.25 tolerated(0.08) benign(0.041) TCGA-CN-4723-01 9 71628520 71628520 G A PRKACG Silent p.L163L 0.25 TCGA-CN-4723-01 9 72132030 72132030 C T APBA1 Missense_Mutation p.E33K 0.64 deleterious_low_confidence(0.01) benign(0.078) TCGA-CN-4723-01 9 74365160 74365160 G A TMEM2 Nonsense_Mutation p.Q44* 0.21 TCGA-CN-4723-01 9 75435903 75435903 C T TMC1 Silent p.L637L 0.29 TCGA-CN-4723-01 9 79834959 79834959 G C VPS13A Missense_Mutation p.E282Q 0.30 tolerated(0.16) benign(0.424) TCGA-CN-4723-01 9 82323642 82323642 C G TLE4 Missense_Mutation p.Q402E 0.30 deleterious(0.03) benign(0.008) TCGA-CN-4723-01 9 84205745 84205745 C G TLE1 Missense_Mutation p.D602H 0.25 deleterious(0.01) probably_damaging(1) TCGA-CN-4723-01 9 84605884 84605884 G C SPATA31D1 Missense_Mutation p.E167Q 0.25 deleterious(0.01) possibly_damaging(0.809) TCGA-CN-4723-01 9 90321338 90321338 G A DAPK1 Missense_Mutation p.D1118N 0.24 tolerated(0.23) benign(0.094) TCGA-CN-4723-01 9 91606129 91606129 G A C9orf47 Silent p.P73P 0.47 TCGA-CN-4723-01 9 95482755 95482755 C T BICD2 Missense_Mutation p.E297K 0.32 tolerated(0.77) possibly_damaging(0.73) TCGA-CN-4723-01 9 96055302 96055302 C T WNK2 Missense_Mutation p.S1889L 0.34 benign(0.194) TCGA-CN-4723-01 X 101139594 101139594 C G ZMAT1 Missense_Mutation p.E269Q 0.58 deleterious(0.01) possibly_damaging(0.642) TCGA-CN-4723-01 X 101382452 101382452 C T TCEAL2 Missense_Mutation p.P217L 0.40 deleterious(0.02) possibly_damaging(0.713) TCGA-CN-4723-01 X 102528931 102528931 C G TCEAL5 Silent p.V187V 0.44 TCGA-CN-4723-01 X 103041593 103041593 C G PLP1 Missense_Mutation p.Q131E 0.50 tolerated_low_confidence(1) benign(0.004) TCGA-CN-4723-01 X 103267305 103267305 G A H2BFWT Silent p.A169A 0.21 TCGA-CN-4723-01 X 103499187 103499187 C G ESX1 Missense_Mutation p.E52Q 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.727) TCGA-CN-4723-01 X 118220824 118220824 C T KIAA1210 Missense_Mutation p.D1457N 0.48 deleterious(0.02) possibly_damaging(0.556) TCGA-CN-4723-01 X 148586602 148586602 G A IDS Silent p.V22V 0.40 TCGA-CN-4723-01 X 148798247 148798247 G C MAGEA11 Missense_Mutation p.K367N 0.52 tolerated(0.63) benign(0.02) TCGA-CN-4723-01 X 1508132 1508132 A G SLC25A6 Splice_Site p.X200_splice 0.07 TCGA-CN-4723-01 X 153693806 153693806 G A PLXNA3 Missense_Mutation p.D762N 0.58 tolerated(0.22) possibly_damaging(0.529) TCGA-CN-4723-01 X 19380883 19380883 G T MAP3K15 Missense_Mutation p.H1218N 0.05 tolerated(0.53) benign(0.045) TCGA-CN-4723-01 X 27999220 27999220 C G DCAF8L1 Missense_Mutation p.D78H 0.42 tolerated_low_confidence(0.06) possibly_damaging(0.603) TCGA-CN-4723-01 X 30578276 30578276 G C CXorf21 Missense_Mutation p.S66C 0.52 tolerated(0.06) possibly_damaging(0.878) TCGA-CN-4723-01 X 35974208 35974208 C G CXorf22 Missense_Mutation p.I435M 0.53 tolerated(0.1) benign(0.149) TCGA-CN-4723-01 X 41196718 41196719 - G DDX3X Frame_Shift_Ins 0.36 TCGA-CN-4723-01 X 47917775 47917775 G C ZNF630 3'UTR 0.50 TCGA-CN-4723-01 X 50167295 50167295 C G DGKK RNA 0.31 TCGA-CN-4723-01 X 54324818 54324818 G C WNK3 Missense_Mutation p.I396M 0.63 deleterious(0) probably_damaging(0.996) TCGA-CN-4723-01 X 55039985 55039985 C G ALAS2 Missense_Mutation p.G512R 0.29 deleterious(0) probably_damaging(1) TCGA-CN-4723-01 X 6069472 6069472 C T NLGN4X Silent p.L12L 0.42 TCGA-CN-4723-01 X 65242121 65242121 C - VSIG4 Frame_Shift_Del p.G395Afs*17 0.46 TCGA-CN-4723-01 X 65479995 65479995 G - HEPH Frame_Shift_Del p.V1085Lfs*13 0.34 TCGA-CN-4723-01 X 69420191 69420191 C A DGAT2L6 Silent p.I118I 0.47 TCGA-CN-4723-01 X 70776821 70776821 G A OGT Missense_Mutation p.D396N 0.61 deleterious(0) possibly_damaging(0.681) TCGA-CN-4723-01 X 73961334 73961334 C T KIAA2022 Missense_Mutation p.D1020N 0.46 deleterious(0) benign(0.436) TCGA-CN-4723-01 X 74288934 74288934 C T ABCB7 Missense_Mutation p.E524K 0.53 deleterious(0) possibly_damaging(0.885) TCGA-CN-4723-01 X 76891448 76891448 G C ATRX Missense_Mutation p.H1553D 0.66 possibly_damaging(0.458) TCGA-CN-4723-01 X 77913599 77913599 C T ZCCHC5 Missense_Mutation p.E107K 0.39 tolerated(0.24) benign(0.012) TCGA-CN-4723-01 X 79999617 79999617 C T BRWD3 Missense_Mutation p.D243N 0.55 deleterious(0) probably_damaging(0.987) TCGA-CN-4723-01 X 9900879 9900879 C G SHROOM2 Missense_Mutation p.P1186A 0.51 deleterious(0.01) probably_damaging(0.986) TCGA-CN-4723-01 Y 15028313 15028313 C A DDX3Y Missense_Mutation p.Q484K 0.08 tolerated(0.29) benign(0.034) TCGA-CN-4725-01 10 125426383 125426383 G A GPR26 Missense_Mutation p.A154T 0.36 deleterious(0.01) probably_damaging(0.951) TCGA-CN-4725-01 11 102987416 102987416 C T DYNC2H1 Nonsense_Mutation p.R247* 0.10 TCGA-CN-4725-01 11 58384695 58384695 G T ZFP91 Missense_Mutation p.R410L 0.30 deleterious(0) probably_damaging(0.999) TCGA-CN-4725-01 11 65298219 65298219 C T SCYL1 Silent p.F323F 0.15 TCGA-CN-4725-01 12 11420570 11420570 C A PRB3 Intron 0.16 TCGA-CN-4725-01 12 11545859 11545859 C T PRB2 Missense_Mutation p.G385R 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CN-4725-01 12 52913871 52913872 - C KRT5 Frame_Shift_Ins p.S71Lfs*9 0.54 TCGA-CN-4725-01 14 58605804 58605804 C T C14orf37 Silent p.S91S 0.36 TCGA-CN-4725-01 14 74968148 74968148 G A LTBP2 Silent p.C1772C 0.37 TCGA-CN-4725-01 15 22369030 22369030 G C OR4M2 Missense_Mutation p.G152A 0.15 deleterious(0.03) probably_damaging(1) TCGA-CN-4725-01 15 41769670 41769670 G A RTF1 Missense_Mutation p.R566Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-CN-4725-01 15 43891508 43891508 A T CKMT1B 3'UTR 0.26 TCGA-CN-4725-01 15 44085984 44085984 G A SERF2 Silent p.S109S 0.24 TCGA-CN-4725-01 15 71175199 71175199 G C THAP10 Missense_Mutation p.P160A 0.19 tolerated(0.39) benign(0.002) TCGA-CN-4725-01 15 85447466 85447466 C T SLC28A1 Silent p.C200C 0.58 TCGA-CN-4725-01 15 86311486 86311486 G A KLHL25 Missense_Mutation p.T519M 0.24 tolerated(0.46) probably_damaging(0.999) TCGA-CN-4725-01 16 11114077 11114077 G A CLEC16A Missense_Mutation p.S444N 0.29 tolerated(0.48) benign(0.001) TCGA-CN-4725-01 16 15870006 15870006 C T MYH11 Missense_Mutation p.R280H 0.33 benign(0.006) TCGA-CN-4725-01 16 23646536 23646536 T C PALB2 Missense_Mutation p.N444S 0.35 tolerated(0.82) benign(0.004) TCGA-CN-4725-01 16 24834933 24834933 T A TNRC6A Missense_Mutation p.N1898K 0.33 tolerated(0.07) benign(0.146) TCGA-CN-4725-01 16 2880459 2880459 C T ZG16B Missense_Mutation p.T42M 0.45 deleterious(0) probably_damaging(0.997) TCGA-CN-4725-01 16 4432462 4432462 C T VASN Silent p.N528N 0.47 TCGA-CN-4725-01 17 27017143 27017143 A C SUPT6H Missense_Mutation p.E1129A 0.47 deleterious(0) probably_damaging(0.996) TCGA-CN-4725-01 17 47700125 47700126 - CCAC SPOP Frame_Shift_Ins p.P17Wfs*5 0.13 TCGA-CN-4725-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.38 deleterious(0.01) probably_damaging(0.914) TCGA-CN-4725-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.25 deleterious(0) probably_damaging(0.983) TCGA-CN-4725-01 18 12325401 12325401 G A TUBB6 Missense_Mutation p.E205K 0.15 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-CN-4725-01 19 12740051 12740051 C - ZNF791 Frame_Shift_Del p.H570Ifs*2 0.20 TCGA-CN-4725-01 19 18968194 18968194 C T UPF1 Silent p.A678A 0.25 TCGA-CN-4725-01 1 162824983 162824983 C A C1orf110 Missense_Mutation p.D161Y 0.20 tolerated(0.12) possibly_damaging(0.601) TCGA-CN-4725-01 1 169529961 169529961 G A F5 Silent p.D139D 0.35 TCGA-CN-4725-01 1 175086194 175086194 G A TNN Missense_Mutation p.D747N 0.36 tolerated(0.06) possibly_damaging(0.9) TCGA-CN-4725-01 1 19992531 19992531 G A HTR6 Silent p.A95A 0.05 TCGA-CN-4725-01 1 202092540 202092540 C T GPR37L1 Missense_Mutation p.S150L 0.43 deleterious(0) possibly_damaging(0.487) TCGA-CN-4725-01 1 33235953 33235953 C T KIAA1522 Silent p.R391R 0.31 TCGA-CN-4725-01 1 6880243 6880243 C T CAMTA1 Silent p.S16S 0.06 TCGA-CN-4725-01 1 76260255 76260255 A G RABGGTB Missense_Mutation p.I306V 0.34 tolerated(0.16) benign(0.002) TCGA-CN-4725-01 20 44641091 44641091 G A MMP9 Silent p.A400A 0.49 TCGA-CN-4725-01 20 60900576 60900576 G T LAMA5 Silent p.R1775R 0.50 TCGA-CN-4725-01 20 62421367 62421367 G A ZBTB46 Silent p.D248D 0.35 TCGA-CN-4725-01 21 44837482 44837482 G A SIK1 Silent p.G639G 0.31 TCGA-CN-4725-01 22 30688463 30688478 GGGGGCTGAGTCCTTC - TBC1D10A Frame_Shift_Del p.K479Rfs*22 0.24 TCGA-CN-4725-01 2 119739968 119739968 G T MARCO Nonsense_Mutation p.G349* 0.33 TCGA-CN-4725-01 2 1652573 1652573 G A PXDN Silent p.R993R 0.39 TCGA-CN-4725-01 2 176947052 176947052 C T EVX2 Missense_Mutation p.A185T 0.44 tolerated(0.09) benign(0.012) TCGA-CN-4725-01 2 220412557 220412557 C T TMEM198 Missense_Mutation p.R166C 0.46 tolerated(0.06) possibly_damaging(0.898) TCGA-CN-4725-01 2 73718322 73718322 T - ALMS1 Frame_Shift_Del p.M3078Rfs*24 0.28 TCGA-CN-4725-01 2 74782758 74782758 G T DOK1 Missense_Mutation p.E139D 0.34 deleterious(0.01) benign(0.03) TCGA-CN-4725-01 2 96944428 96944428 G A SNRNP200 Missense_Mutation p.S1782L 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-4725-01 3 39136321 39136321 G A WDR48 3'UTR 0.25 TCGA-CN-4725-01 3 64606848 64606848 C T ADAMTS9 Missense_Mutation p.D919N 0.26 tolerated(0.18) benign(0.017) TCGA-CN-4725-01 4 47939397 47939397 C T CNGA1 Missense_Mutation p.D441N 0.42 tolerated(0.23) benign(0.399) TCGA-CN-4725-01 4 5170125 5170125 C T STK32B Missense_Mutation p.R70W 0.30 deleterious(0) probably_damaging(1) TCGA-CN-4725-01 5 24537764 24537764 T C CDH10 Missense_Mutation p.K84R 0.06 tolerated(0.46) probably_damaging(0.973) TCGA-CN-4725-01 5 82816466 82816466 G A VCAN Missense_Mutation p.E781K 0.34 tolerated(0.53) benign(0.015) TCGA-CN-4725-01 6 131917292 131917292 C T MED23 Silent p.E930E 0.16 TCGA-CN-4725-01 6 26157170 26157170 G T HIST1H1E Silent p.A184A 0.17 TCGA-CN-4725-01 6 29141855 29141855 C A OR2J2 Missense_Mutation p.A148D 0.44 deleterious(0.01) possibly_damaging(0.73) TCGA-CN-4725-01 6 33177826 33177826 T G RING1 Missense_Mutation p.L125R 0.16 deleterious(0) possibly_damaging(0.679) TCGA-CN-4725-01 7 38389008 38389008 C T TRGV5 Missense_Mutation p.R101Q 0.37 tolerated(0.48) benign(0.005) TCGA-CN-4725-01 7 75633097 75633097 G A STYXL1 Missense_Mutation p.R226C 0.22 deleterious(0.02) possibly_damaging(0.901) TCGA-CN-4725-01 7 82785121 82785121 G A PCLO Missense_Mutation p.S279F 0.43 unknown(0) TCGA-CN-4725-01 7 99128811 99128811 T G ZKSCAN5 Missense_Mutation p.S487A 0.33 tolerated(0.57) benign(0.123) TCGA-CN-4725-01 8 134474117 134474117 C A ST3GAL1 Splice_Site p.X283_splice 0.37 TCGA-CN-4725-01 9 131346592 131346592 G A SPTAN1 Missense_Mutation p.R742H 0.04 tolerated(0.12) possibly_damaging(0.615) TCGA-CN-4725-01 9 135273709 135273709 G A TTF1 Silent p.V532V 0.50 TCGA-CN-4725-01 9 139369094 139369094 C T SEC16A Missense_Mutation p.G992R 0.35 deleterious(0) probably_damaging(1) TCGA-CN-4725-01 9 139995566 139995566 C G MAN1B1 Silent p.A342A 0.33 TCGA-CN-4725-01 9 72055946 72055946 C G APBA1 Missense_Mutation p.R756P 0.12 deleterious(0) probably_damaging(0.937) TCGA-CN-4725-01 X 114357668 114357668 C T LRCH2 Missense_Mutation p.R646Q 0.48 tolerated(0.33) possibly_damaging(0.845) TCGA-CN-4725-01 X 70356303 70356303 G A MED12 Missense_Mutation p.R1733Q 0.67 benign(0.062) TCGA-CN-4726-01 11 56380883 56380883 A C OR5M1 Silent p.L32L 0.11 TCGA-CN-4726-01 11 56380889 56380889 T C OR5M1 Silent p.V30V 0.12 TCGA-CN-4726-01 11 62557444 62557444 G A TMEM179B Silent p.R195R 0.24 TCGA-CN-4726-01 11 703061 703061 G A TMEM80 Missense_Mutation p.A140T 0.34 tolerated(0.08) possibly_damaging(0.747) TCGA-CN-4726-01 11 71714512 71714512 G A NUMA1 3'UTR 0.13 TCGA-CN-4726-01 12 13717097 13717097 G A GRIN2B Silent p.I1025I 0.24 TCGA-CN-4726-01 12 30863009 30863009 A C CAPRIN2 Missense_Mutation p.L1021V 0.21 deleterious(0) probably_damaging(0.946) TCGA-CN-4726-01 12 53715239 53715239 A C AAAS Missense_Mutation p.L4R 0.29 deleterious(0) probably_damaging(0.916) TCGA-CN-4726-01 12 539877 539877 G C CCDC77 Missense_Mutation p.Q186H 0.20 tolerated(0.07) benign(0.391) TCGA-CN-4726-01 12 57398238 57398238 G A ZBTB39 Missense_Mutation p.P155L 0.34 tolerated(0.05) benign(0.02) TCGA-CN-4726-01 12 80749653 80749653 C A OTOGL Missense_Mutation p.P1902T 0.27 tolerated(0.06) possibly_damaging(0.861) TCGA-CN-4726-01 13 19997299 19997299 C A TPTE2 Missense_Mutation p.C491F 0.10 tolerated(0.13) benign(0) TCGA-CN-4726-01 13 21219018 21219018 G A IFT88 Missense_Mutation p.E633K 0.17 tolerated(0.05) benign(0.298) TCGA-CN-4726-01 14 100188342 100188342 G A CYP46A1 Missense_Mutation p.R372H 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-4726-01 14 105061290 105061290 C T TMEM179 3'UTR 0.31 TCGA-CN-4726-01 14 23459034 23459034 A G C14orf93 Missense_Mutation p.I334T 0.28 tolerated_low_confidence(0.1) benign(0.064) TCGA-CN-4726-01 14 36783737 36783737 A G MBIP Silent p.N184N 0.20 TCGA-CN-4726-01 14 65262141 65262141 G A SPTB Missense_Mutation p.R520W 0.28 deleterious(0.01) probably_damaging(1) TCGA-CN-4726-01 15 85384098 85384098 C A ALPK3 Silent p.R732R 0.34 TCGA-CN-4726-01 16 30537133 30537133 G A ZNF768 Nonsense_Mutation p.Q110* 0.26 TCGA-CN-4726-01 16 3554771 3554771 A G CLUAP1 Missense_Mutation p.E25G 0.18 tolerated(0.07) probably_damaging(0.992) TCGA-CN-4726-01 16 77387771 77387771 C A ADAMTS18 Silent p.A491A 0.20 TCGA-CN-4726-01 16 79633679 79633679 G A MAF Missense_Mutation p.R41C 0.26 deleterious(0) unknown(0) TCGA-CN-4726-01 16 80646547 80646548 GA T CDYL2 Frame_Shift_Del p.F398Yfs*59 0.18 TCGA-CN-4726-01 16 86613419 86613419 C T FOXL1 3'UTR 0.30 TCGA-CN-4726-01 17 33772744 33772744 G C SLFN13 Intron 0.25 TCGA-CN-4726-01 17 36485440 36485440 G A GPR179 Nonsense_Mutation p.Q1338* 0.22 TCGA-CN-4726-01 17 64881045 64881045 G A CACNG5 Intron 0.24 TCGA-CN-4726-01 17 7579310 7579310 A T TP53 Splice_Site p.X125_splice 0.39 TCGA-CN-4726-01 18 20833900 20833900 C T CABLES1 Silent p.D587D 0.23 TCGA-CN-4726-01 18 21098936 21098936 C T C18orf8 Silent p.L246L 0.21 TCGA-CN-4726-01 19 14029735 14029735 A - CC2D1A Frame_Shift_Del p.P345Rfs*89 0.30 TCGA-CN-4726-01 19 36211899 36211899 C - KMT2B Frame_Shift_Del p.K553Nfs*52 0.20 TCGA-CN-4726-01 19 44536829 44536829 C G ZNF222 Silent p.V374V 0.20 TCGA-CN-4726-01 19 9763609 9763609 C G ZNF562 3'UTR 0.21 TCGA-CN-4726-01 1 104112944 104112944 C T AMY2B Intron 0.23 TCGA-CN-4726-01 1 111495337 111495337 G C LRIF1 Missense_Mutation p.P57A 0.18 deleterious(0.01) possibly_damaging(0.908) TCGA-CN-4726-01 1 120510064 120510064 C G NOTCH2 Missense_Mutation p.C482S 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-4726-01 1 151260750 151260750 G A ZNF687 Silent p.P661P 0.25 TCGA-CN-4726-01 1 16461022 16461023 - A EPHA2 Frame_Shift_Ins p.A542Gfs*54 0.24 TCGA-CN-4726-01 1 173934116 173934116 G T RC3H1 Missense_Mutation p.L493M 0.29 deleterious(0.04) probably_damaging(0.927) TCGA-CN-4726-01 1 182827949 182827949 G A DHX9 Missense_Mutation p.G328S 0.27 tolerated(0.3) possibly_damaging(0.46) TCGA-CN-4726-01 1 237167512 237167512 G A MT1HL1 Missense_Mutation p.S54L 0.22 tolerated(0.17) unknown(0) TCGA-CN-4726-01 1 243419393 243419393 C T SDCCAG8 5'UTR 0.20 TCGA-CN-4726-01 1 40668129 40668129 G A RLF Missense_Mutation p.R218Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-4726-01 1 76378560 76378560 G T MSH4 Missense_Mutation p.K933N 0.20 tolerated_low_confidence(0.54) benign(0.001) TCGA-CN-4726-01 20 419364 419364 T A TBC1D20 Missense_Mutation p.T360S 0.28 tolerated(0.6) benign(0.008) TCGA-CN-4726-01 22 19318837 19318837 G A HIRA 3'UTR 0.28 TCGA-CN-4726-01 22 38212212 38212212 G A GCAT Missense_Mutation p.R357H 0.30 deleterious(0.03) possibly_damaging(0.751) TCGA-CN-4726-01 2 105858867 105858867 G T GPR45 Silent p.L184L 0.20 TCGA-CN-4726-01 2 27278581 27278581 C A AGBL5 Missense_Mutation p.Q314K 0.15 tolerated(0.29) possibly_damaging(0.781) TCGA-CN-4726-01 2 27278587 27278587 C T AGBL5 Silent p.L316L 0.15 TCGA-CN-4726-01 2 3391502 3391502 C T TRAPPC12 Silent p.I36I 0.23 TCGA-CN-4726-01 2 49190547 49190547 G T FSHR Silent p.I471I 0.25 TCGA-CN-4726-01 2 68740274 68740274 A G APLF Missense_Mutation p.N135S 0.30 tolerated(0.11) benign(0.063) TCGA-CN-4726-01 2 80620389 80620389 T C CTNNA2 Silent p.T370T 0.25 TCGA-CN-4726-01 3 134885846 134885846 G T EPHB1 Missense_Mutation p.R586L 0.17 tolerated(0.33) benign(0.115) TCGA-CN-4726-01 3 139279785 139279785 A G NMNAT3 3'UTR 0.18 TCGA-CN-4726-01 3 160025482 160025482 C A IFT80 Missense_Mutation p.V349F 0.30 deleterious(0) probably_damaging(0.913) TCGA-CN-4726-01 4 149357399 149357399 C A NR3C2 Missense_Mutation p.C205F 0.23 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-CN-4726-01 4 94138038 94138038 G T GRID2 Missense_Mutation p.K313N 0.22 tolerated(0.16) possibly_damaging(0.867) TCGA-CN-4726-01 5 138714989 138714989 G A SLC23A1 Missense_Mutation p.A331V 0.29 deleterious(0) benign(0.111) TCGA-CN-4726-01 5 140176610 140176610 G T PCDHA2 Silent p.A687A 0.20 TCGA-CN-4726-01 5 140261993 140261993 G A PCDHA13 Missense_Mutation p.R47H 0.26 deleterious_low_confidence(0.03) benign(0.369) TCGA-CN-4726-01 5 156536028 156536028 T C HAVCR2 5'UTR 0.27 TCGA-CN-4726-01 5 159831502 159831502 C T SLU7 Missense_Mutation p.R509Q 0.13 tolerated(0.4) benign(0.015) TCGA-CN-4726-01 5 79032114 79032114 A T CMYA5 Missense_Mutation p.K2509I 0.21 probably_damaging(0.987) TCGA-CN-4726-01 5 89943453 89943453 C T GPR98 Missense_Mutation p.P1054L 0.23 benign(0.033) TCGA-CN-4726-01 5 90106533 90106533 T C GPR98 Silent p.P5152P 0.27 TCGA-CN-4726-01 6 26251971 26251971 A G HIST1H2BH Silent p.K31K 0.22 TCGA-CN-4726-01 6 30309645 30309645 C T TRIM39 Missense_Mutation p.T389I 0.20 tolerated(0.56) benign(0.013) TCGA-CN-4726-01 6 3113635 3113635 G A RIPK1 3'UTR 0.19 TCGA-CN-4726-01 6 42185571 42185571 G A MRPS10 Missense_Mutation p.A6V 0.16 tolerated_low_confidence(0.34) benign(0.003) TCGA-CN-4726-01 6 44117677 44117677 G T TMEM63B Missense_Mutation p.A499S 0.31 tolerated(0.12) possibly_damaging(0.676) TCGA-CN-4726-01 6 73900382 73900382 C A KCNQ5 Missense_Mutation p.A574D 0.26 deleterious(0) probably_damaging(0.999) TCGA-CN-4726-01 7 11415326 11415326 T A THSD7A 3'UTR 0.25 TCGA-CN-4726-01 7 132192727 132192727 G T PLXNA4 Silent p.I242I 0.18 TCGA-CN-4726-01 7 139636105 139636105 A T TBXAS1 Missense_Mutation p.E151V 0.24 deleterious(0) possibly_damaging(0.882) TCGA-CN-4726-01 7 143088775 143088775 G T EPHA1 Nonsense_Mutation p.Y930* 0.24 TCGA-CN-4726-01 7 36552720 36552720 G C AOAH 3'UTR 0.32 TCGA-CN-4726-01 8 107782432 107782432 C T ABRA 5'UTR 0.15 TCGA-CN-4726-01 8 124156985 124156985 G A TBC1D31 Missense_Mutation p.R955H 0.19 tolerated(1) benign(0) TCGA-CN-4726-01 8 131949376 131949376 C T ADCY8 Missense_Mutation p.R475H 0.16 deleterious(0) probably_damaging(0.968) TCGA-CN-4726-01 8 141678371 141678371 C T PTK2 Silent p.V967V 0.20 TCGA-CN-4726-01 8 141856357 141856357 A G PTK2 Splice_Site p.X198_splice 0.17 TCGA-CN-4726-01 9 127734036 127734036 C T SCAI Missense_Mutation p.R519H 0.25 tolerated(0.09) benign(0.135) TCGA-CN-4726-01 9 86482718 86482718 G A KIF27 Missense_Mutation p.R939C 0.11 deleterious(0) probably_damaging(0.931) TCGA-CN-4726-01 X 109764228 109764228 C T TDGF1P3 RNA 0.42 TCGA-CN-4726-01 X 123040864 123040864 C T XIAP Missense_Mutation p.R443C 0.52 deleterious(0.04) possibly_damaging(0.656) TCGA-CN-4726-01 X 125685920 125685920 C T DCAF12L1 Silent p.P224P 0.50 TCGA-CN-4726-01 X 130215772 130215772 C G ARHGAP36 Missense_Mutation p.R45G 0.34 tolerated_low_confidence(0.37) benign(0.002) TCGA-CN-4727-01 10 100219421 100219421 A T HPSE2 Silent p.L563L 0.25 TCGA-CN-4727-01 10 101658519 101658519 T C DNMBP Splice_Site p.X901_splice 0.25 TCGA-CN-4727-01 10 106675638 106675638 G A SORCS3 Missense_Mutation p.G248D 0.24 deleterious(0) probably_damaging(0.949) TCGA-CN-4727-01 10 108389039 108389039 G T SORCS1 Missense_Mutation p.N861K 0.47 tolerated(0.39) benign(0.07) TCGA-CN-4727-01 10 117486770 117486770 G T ATRNL1 Nonsense_Mutation p.E1270* 0.36 TCGA-CN-4727-01 10 129901414 129901414 T A MKI67 Missense_Mutation p.D2897V 0.20 tolerated(0.13) possibly_damaging(0.483) TCGA-CN-4727-01 10 16526679 16526679 C A PTER Missense_Mutation p.T99K 0.13 deleterious(0) probably_damaging(0.997) TCGA-CN-4727-01 10 16955852 16955852 C A CUBN Silent p.L2497L 0.14 TCGA-CN-4727-01 10 17032445 17032445 G T CUBN Missense_Mutation p.P1413Q 0.14 tolerated(0.23) benign(0.155) TCGA-CN-4727-01 10 17275622 17275622 G C VIM Missense_Mutation p.E221Q 0.43 deleterious(0.03) possibly_damaging(0.867) TCGA-CN-4727-01 10 18250541 18250541 C A SLC39A12 Missense_Mutation p.A98D 0.50 deleterious(0.01) probably_damaging(0.979) TCGA-CN-4727-01 10 28030397 28030397 C T MKX Silent p.R75R 0.05 TCGA-CN-4727-01 10 29762806 29762806 C G SVIL Silent p.A1830A 0.21 TCGA-CN-4727-01 10 3190187 3190187 T A PITRM1 Silent p.I688I 0.47 TCGA-CN-4727-01 10 394634 394634 G A DIP2C Missense_Mutation p.P1060S 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4727-01 10 5693182 5693182 T G ASB13 Missense_Mutation p.M126L 0.13 tolerated(0.32) benign(0.018) TCGA-CN-4727-01 10 63964747 63964747 T C RTKN2 Missense_Mutation p.K352R 0.28 tolerated(0.19) benign(0.12) TCGA-CN-4727-01 10 64967944 64967944 T A JMJD1C Missense_Mutation p.K1162M 0.36 deleterious(0) probably_damaging(0.999) TCGA-CN-4727-01 10 70987072 70987072 C T HKDC1 Missense_Mutation p.T58M 0.28 deleterious(0.02) probably_damaging(0.913) TCGA-CN-4727-01 10 7773950 7773950 G A ITIH2 Silent p.T546T 0.13 TCGA-CN-4727-01 10 85984691 85984691 C G LRIT2 Missense_Mutation p.G97A 0.25 tolerated(0.07) possibly_damaging(0.731) TCGA-CN-4727-01 10 86014184 86014184 G T RGR Missense_Mutation p.K209N 0.18 deleterious(0) possibly_damaging(0.836) TCGA-CN-4727-01 10 96495160 96495160 C A CYP2C18 Missense_Mutation p.R478S 0.20 tolerated(1) benign(0.005) TCGA-CN-4727-01 10 99215802 99215802 G C ZDHHC16 Splice_Site p.X340_splice 0.19 TCGA-CN-4727-01 11 110449997 110449997 C G ARHGAP20 3'UTR 0.56 TCGA-CN-4727-01 11 124135167 124135167 A C OR8G5 Missense_Mutation p.M149L 0.46 tolerated(0.06) benign(0.008) TCGA-CN-4727-01 11 1268117 1268117 C T MUC5B Missense_Mutation p.T3336I 0.25 unknown(0) TCGA-CN-4727-01 11 1270765 1270765 C A MUC5B Missense_Mutation p.R4219S 0.12 probably_damaging(0.999) TCGA-CN-4727-01 11 1271606 1271606 C A MUC5B Missense_Mutation p.S4499Y 0.40 benign(0) TCGA-CN-4727-01 11 133790286 133790286 G A IGSF9B Missense_Mutation p.P1112S 0.07 deleterious_low_confidence(0.03) benign(0.079) TCGA-CN-4727-01 11 13513984 13513984 C T PTH Missense_Mutation p.V106M 0.15 tolerated(0.22) probably_damaging(0.97) TCGA-CN-4727-01 11 16071443 16071443 G C SOX6 Silent p.P431P 0.34 TCGA-CN-4727-01 11 19735192 19735192 C A NAV2 5'UTR 0.26 TCGA-CN-4727-01 11 20673942 20673942 C T SLC6A5 Silent p.V726V 0.15 TCGA-CN-4727-01 11 22387106 22387106 G T SLC17A6 Missense_Mutation p.M254I 0.23 tolerated(1) benign(0.001) TCGA-CN-4727-01 11 22397537 22397537 T G SLC17A6 Missense_Mutation p.M395R 0.36 deleterious(0) possibly_damaging(0.722) TCGA-CN-4727-01 11 31327905 31327905 C A DCDC1 Missense_Mutation p.Q155H 0.22 tolerated(0.4) benign(0.006) TCGA-CN-4727-01 11 3681086 3681086 G A ART1 Missense_Mutation p.E113K 0.24 deleterious(0.03) benign(0.168) TCGA-CN-4727-01 11 404053 404053 G A PKP3 Missense_Mutation p.V730M 0.21 tolerated(0.06) possibly_damaging(0.867) TCGA-CN-4727-01 11 5291131 5291131 C A HBE1 5'UTR 0.24 TCGA-CN-4727-01 11 55703542 55703542 G T OR5I1 Missense_Mutation p.T112K 0.57 deleterious(0) probably_damaging(0.994) TCGA-CN-4727-01 11 55944458 55944458 G T OR5J2 Missense_Mutation p.R122L 0.50 deleterious(0) possibly_damaging(0.908) TCGA-CN-4727-01 11 56043301 56043301 G T OR5T1 Missense_Mutation p.G63W 0.23 tolerated(0.19) possibly_damaging(0.682) TCGA-CN-4727-01 11 56237387 56237387 G A OR5M3 Missense_Mutation p.T196I 0.52 tolerated(0.37) benign(0.038) TCGA-CN-4727-01 11 57995542 57995542 G T OR10Q1 Missense_Mutation p.S269Y 0.43 deleterious(0) probably_damaging(0.997) TCGA-CN-4727-01 11 6220867 6220867 T A OR52W1 Silent p.P138P 0.14 TCGA-CN-4727-01 11 62437249 62437249 C G C11orf48 Silent p.P59P 0.19 TCGA-CN-4727-01 11 62751493 62751493 G A SLC22A6 Silent p.A132A 0.49 TCGA-CN-4727-01 11 65487904 65487905 - A RNASEH2C Intron 0.41 TCGA-CN-4727-01 11 6661920 6661920 C G DCHS1 Missense_Mutation p.A309P 0.33 tolerated(0.37) benign(0.002) TCGA-CN-4727-01 11 6789752 6789752 G T OR2AG2 Missense_Mutation p.A146D 0.41 deleterious(0) possibly_damaging(0.865) TCGA-CN-4727-01 11 70505947 70505947 C A SHANK2 Missense_Mutation p.D684Y 0.18 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 11 71942179 71942179 G A INPPL1 Nonsense_Mutation p.W481* 0.37 TCGA-CN-4727-01 11 84996411 84996411 T A DLG2 Splice_Site p.X14_splice 0.23 TCGA-CN-4727-01 11 85436114 85436114 G T SYTL2 Missense_Mutation p.D462E 0.45 tolerated(0.2) benign(0.023) TCGA-CN-4727-01 11 92498219 92498219 C A FAT3 Missense_Mutation p.Q1387K 0.19 benign(0.358) TCGA-CN-4727-01 12 105260337 105260337 G T SLC41A2 Missense_Mutation p.P350T 0.36 deleterious(0.05) benign(0.055) TCGA-CN-4727-01 12 108051315 108051315 T A BTBD11 Nonsense_Mutation p.Y1045* 0.31 TCGA-CN-4727-01 12 110221305 110221305 T A TRPV4 3'UTR 0.46 TCGA-CN-4727-01 12 112451177 112451177 C A ERP29 5'UTR 0.35 TCGA-CN-4727-01 12 11545740 11545740 C T PRB2 3'UTR 0.07 TCGA-CN-4727-01 12 118198938 118198938 C T KSR2 Silent p.P288P 0.14 TCGA-CN-4727-01 12 121175737 121175737 G C ACADS Missense_Mutation p.W190C 0.24 tolerated(0.16) benign(0.029) TCGA-CN-4727-01 12 123494588 123494588 T A PITPNM2 Missense_Mutation p.N151I 0.31 deleterious(0.02) possibly_damaging(0.46) TCGA-CN-4727-01 12 126138491 126138491 G A TMEM132B Silent p.Q824Q 0.22 TCGA-CN-4727-01 12 1995443 1995443 G T CACNA2D4 Silent p.T313T 0.12 TCGA-CN-4727-01 12 20769239 20769239 G T PDE3A Missense_Mutation p.G449C 0.41 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 12 21375295 21375295 C T SLCO1B1 Silent p.L582L 0.24 TCGA-CN-4727-01 12 49952509 49952509 C T MCRS1 Missense_Mutation p.A449T 0.32 deleterious(0.02) benign(0.373) TCGA-CN-4727-01 12 53045402 53045402 C T KRT2 Silent p.K175K 0.28 TCGA-CN-4727-01 12 56547618 56547618 C A MYL6B Intron 0.26 TCGA-CN-4727-01 12 57974825 57974825 G A KIF5A Silent p.L875L 0.29 TCGA-CN-4727-01 12 63544528 63544528 C G AVPR1A Missense_Mutation p.R30P 0.19 tolerated(0.32) benign(0.001) TCGA-CN-4727-01 12 66152423 66152423 C T RPSAP52 RNA 0.37 TCGA-CN-4727-01 12 6690915 6690915 G C CHD4 Missense_Mutation p.N1527K 0.21 tolerated(0.67) possibly_damaging(0.727) TCGA-CN-4727-01 12 7016479 7016479 G A LRRC23 Missense_Mutation p.G164E 0.38 tolerated(0.13) benign(0.068) TCGA-CN-4727-01 12 77216208 77216208 C A ZDHHC17 Missense_Mutation p.A265E 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-CN-4727-01 12 78444924 78444924 G C NAV3 Missense_Mutation p.S838T 0.32 tolerated(0.09) possibly_damaging(0.888) TCGA-CN-4727-01 12 80632731 80632731 G C OTOGL Silent p.P297P 0.27 TCGA-CN-4727-01 12 80735783 80735783 T A OTOGL Silent p.I1693I 0.15 TCGA-CN-4727-01 12 80747126 80747126 A G OTOGL Missense_Mutation p.K1801R 0.44 tolerated(0.12) possibly_damaging(0.539) TCGA-CN-4727-01 12 81610681 81610681 G T ACSS3 Missense_Mutation p.E452D 0.18 deleterious(0) probably_damaging(0.982) TCGA-CN-4727-01 12 81839439 81839439 C - PPFIA2 Frame_Shift_Del p.V156Wfs*2 0.31 TCGA-CN-4727-01 12 93873224 93873224 G C MRPL42 Silent p.V65V 0.33 TCGA-CN-4727-01 12 95228715 95228715 C A MIR492 3'Flank 0.13 TCGA-CN-4727-01 13 101844272 101844272 G T NALCN Missense_Mutation p.T587N 0.54 deleterious(0.04) possibly_damaging(0.737) TCGA-CN-4727-01 13 107862932 107862932 C T FAM155A Missense_Mutation p.G363R 0.34 deleterious(0) possibly_damaging(0.811) TCGA-CN-4727-01 13 24233278 24233278 G A TNFRSF19 Missense_Mutation p.A179T 0.38 deleterious(0.05) possibly_damaging(0.861) TCGA-CN-4727-01 13 25262596 25262596 C T ATP12A Missense_Mutation p.A123V 0.36 tolerated(0.06) benign(0.029) TCGA-CN-4727-01 13 25901160 25901160 A G NUPL1 Missense_Mutation p.I380V 0.21 tolerated(0.17) benign(0.02) TCGA-CN-4727-01 13 26413696 26413696 C T ATP8A2 Missense_Mutation p.H964Y 0.12 tolerated(0.07) possibly_damaging(0.609) TCGA-CN-4727-01 13 30784522 30784522 T A KATNAL1 Missense_Mutation p.D402V 0.16 deleterious(0) possibly_damaging(0.526) TCGA-CN-4727-01 13 31233367 31233367 A G USPL1 Silent p.L1051L 0.19 TCGA-CN-4727-01 13 33344509 33344509 G T PDS5B Missense_Mutation p.R1292L 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CN-4727-01 13 34392293 34392293 G A RFC3 5'UTR 0.09 TCGA-CN-4727-01 13 35733576 35733576 G C NBEA Missense_Mutation p.V1090L 0.19 tolerated_low_confidence(0.15) benign(0.118) TCGA-CN-4727-01 13 36049804 36049804 C T MAB21L1 Missense_Mutation p.V158M 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-CN-4727-01 13 36700076 36700076 G T DCLK1 Silent p.R67R 0.19 TCGA-CN-4727-01 13 52650229 52650229 A T NEK5 Missense_Mutation p.S566R 0.35 tolerated(0.56) benign(0.006) TCGA-CN-4727-01 13 58208417 58208417 C T PCDH17 Silent p.N579N 0.14 TCGA-CN-4727-01 13 67799496 67799496 T G PCDH9 Intron 0.20 TCGA-CN-4727-01 13 78474768 78474768 C T EDNRB Missense_Mutation p.V415I 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-CN-4727-01 14 102453804 102453804 G T DYNC1H1 Silent p.L851L 0.24 TCGA-CN-4727-01 14 104474748 104474748 A C TDRD9 Splice_Site p.X685_splice 0.34 TCGA-CN-4727-01 14 105408280 105408280 T C AHNAK2 Missense_Mutation p.Q4503R 0.16 possibly_damaging(0.775) TCGA-CN-4727-01 14 106209175 106209175 G T IGHG1 Silent p.T78T 0.38 TCGA-CN-4727-01 14 106610441 106610441 C T IGHV3-15 Missense_Mutation p.G77R 0.12 tolerated_low_confidence(0.07) benign(0.119) TCGA-CN-4727-01 14 20248711 20248711 C A OR4M1 Missense_Mutation p.T77K 0.26 deleterious(0) possibly_damaging(0.811) TCGA-CN-4727-01 14 20344521 20344521 C T OR4K2 Missense_Mutation p.S32L 0.26 tolerated(0.13) benign(0.049) TCGA-CN-4727-01 14 20928404 20928404 A T TMEM55B Nonsense_Mutation p.C136* 0.10 TCGA-CN-4727-01 14 21360347 21360347 C G RNASE3 3'UTR 0.13 TCGA-CN-4727-01 14 21831310 21831310 T G SUPT16H Splice_Site p.X466_splice 0.20 TCGA-CN-4727-01 14 22362781 22362781 C T TRAV8-4 Missense_Mutation p.T14I 0.21 tolerated(0.58) benign(0.005) TCGA-CN-4727-01 14 23567116 23567116 T C C14orf119 Silent p.S83S 0.18 TCGA-CN-4727-01 14 30066838 30066838 C T PRKD1 Missense_Mutation p.D765N 0.18 deleterious(0) probably_damaging(0.998) TCGA-CN-4727-01 14 34269338 34269338 G T NPAS3 Missense_Mutation p.G609C 0.21 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CN-4727-01 14 47120954 47120954 G C RPL10L 5'UTR 0.36 TCGA-CN-4727-01 14 58917324 58917324 G A KIAA0586 Missense_Mutation p.S383N 0.34 tolerated(0.3) benign(0.005) TCGA-CN-4727-01 14 69529205 69529205 C G DCAF5 Missense_Mutation p.G324R 0.11 deleterious(0.01) possibly_damaging(0.715) TCGA-CN-4727-01 14 74371737 74371737 G A ZNF410 Silent p.K305K 0.18 TCGA-CN-4727-01 14 81259118 81259118 C T CEP128 Missense_Mutation p.G516S 0.15 deleterious(0.02) benign(0.03) TCGA-CN-4727-01 14 89041109 89041109 G T ZC3H14 Nonsense_Mutation p.G312* 0.15 TCGA-CN-4727-01 14 91763774 91763774 C T CCDC88C Missense_Mutation p.E1281K 0.45 deleterious(0.02) probably_damaging(0.983) TCGA-CN-4727-01 14 92958015 92958015 G T SLC24A4 Missense_Mutation p.G515V 0.28 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 14 92958081 92958081 C A SLC24A4 Missense_Mutation p.P537Q 0.26 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 14 95080961 95080961 C A SERPINA3 Nonsense_Mutation p.Y61* 0.38 TCGA-CN-4727-01 15 20496746 20496746 T G CHEK2P2 RNA 0.13 TCGA-CN-4727-01 15 20657758 20657758 C A HERC2P3 RNA 0.31 TCGA-CN-4727-01 15 24921726 24921726 G C NPAP1 Missense_Mutation p.A238P 0.36 tolerated(0.13) probably_damaging(0.952) TCGA-CN-4727-01 15 25959218 25959218 G A ATP10A Silent p.G649G 0.34 TCGA-CN-4727-01 15 33261044 33261044 G T FMN1 Missense_Mutation p.P730H 0.30 deleterious_low_confidence(0) unknown(0) TCGA-CN-4727-01 15 35085611 35085611 G C ACTC1 Missense_Mutation p.R97G 0.38 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CN-4727-01 15 37388489 37388489 C A MEIS2 Splice_Site p.X129_splice 0.11 TCGA-CN-4727-01 15 49869035 49869035 C A FAM227B Missense_Mutation p.S150I 0.38 tolerated(0.08) benign(0.067) TCGA-CN-4727-01 15 54307972 54307972 C T UNC13C Nonsense_Mutation p.Q958* 0.15 TCGA-CN-4727-01 15 76588079 76588079 C A ETFA Splice_Site p.X14_splice 0.24 TCGA-CN-4727-01 15 79056076 79056076 G T ADAMTS7 Missense_Mutation p.P1569T 0.06 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 15 79292140 79292140 G - RASGRF1 Frame_Shift_Del p.N914Tfs*15 0.18 TCGA-CN-4727-01 15 80450432 80450432 G A FAH Missense_Mutation p.D38N 0.17 tolerated(0.1) benign(0.007) TCGA-CN-4727-01 15 81650821 81650821 A T TMC3 Missense_Mutation p.F174L 0.22 deleterious(0) possibly_damaging(0.564) TCGA-CN-4727-01 15 83333627 83333627 G T AP3B2 Missense_Mutation p.D680E 0.12 tolerated(0.36) benign(0.054) TCGA-CN-4727-01 15 83335614 83335614 C A AP3B2 Silent p.A579A 0.23 TCGA-CN-4727-01 15 97327404 97327404 A G SPATA8 Silent p.S37S 0.31 TCGA-CN-4727-01 16 17202577 17202577 A G XYLT1 Missense_Mutation p.V952A 0.14 tolerated(0.07) benign(0.338) TCGA-CN-4727-01 16 24801674 24801674 G A TNRC6A Missense_Mutation p.G571S 0.21 deleterious(0.04) possibly_damaging(0.637) TCGA-CN-4727-01 16 2580803 2580803 C T CEMP1 Missense_Mutation p.C91Y 0.38 tolerated_low_confidence(1) benign(0) TCGA-CN-4727-01 16 31733987 31733987 G T ZNF720 Missense_Mutation p.R15L 0.22 tolerated(1) benign(0) TCGA-CN-4727-01 16 3459002 3459002 G A ZNF174 3'UTR 0.52 TCGA-CN-4727-01 16 4731766 4731766 G T MGRN1 Missense_Mutation p.K449N 0.17 deleterious(0.01) possibly_damaging(0.839) TCGA-CN-4727-01 16 48232119 48232119 C T ABCC11 Missense_Mutation p.S717N 0.16 tolerated(0.36) benign(0.005) TCGA-CN-4727-01 16 48278415 48278415 T A LONP2 Missense_Mutation p.L39Q 0.50 deleterious(0) possibly_damaging(0.46) TCGA-CN-4727-01 16 49669635 49669635 T A ZNF423 Missense_Mutation p.H1143L 0.16 deleterious_low_confidence(0.01) benign(0.05) TCGA-CN-4727-01 16 632905 632905 G T PIGQ Silent p.P518P 0.40 TCGA-CN-4727-01 16 72094424 72094424 C A HP Silent p.R286R 0.51 TCGA-CN-4727-01 16 88876010 88876010 C T APRT 3'UTR 0.13 TCGA-CN-4727-01 17 10267796 10267796 G A MYH13 Missense_Mutation p.R18W 0.47 deleterious(0) probably_damaging(0.997) TCGA-CN-4727-01 17 10545739 10545739 G A MYH3 Missense_Mutation p.A628V 0.13 tolerated(0.07) benign(0) TCGA-CN-4727-01 17 10584277 10584277 C A SCO1 3'UTR 0.45 TCGA-CN-4727-01 17 11543689 11543689 G C DNAH9 Missense_Mutation p.R630P 0.17 possibly_damaging(0.463) TCGA-CN-4727-01 17 11895761 11895761 C T ZNF18 Nonsense_Mutation p.W129* 0.35 TCGA-CN-4727-01 17 18862478 18862478 G T SLC5A10 Missense_Mutation p.G72C 0.20 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 17 25935022 25935022 C A KSR1 Missense_Mutation p.Q578K 0.45 deleterious(0.01) possibly_damaging(0.697) TCGA-CN-4727-01 17 41959835 41959836 GC - MPP2 Frame_Shift_Del p.R166Hfs*17 0.44 TCGA-CN-4727-01 17 4442815 4442815 C G MYBBP1A Silent p.A1294A 0.19 TCGA-CN-4727-01 17 45419337 45419337 C T EFCAB13 Missense_Mutation p.S81L 0.27 tolerated(0.07) benign(0.016) TCGA-CN-4727-01 17 4646665 4646665 G C ZMYND15 Missense_Mutation p.W404C 0.34 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 17 47589374 47589374 G A NGFR Silent p.L314L 0.46 TCGA-CN-4727-01 17 49713340 49713340 A G CA10 Missense_Mutation p.I222T 0.23 tolerated(0.08) benign(0.084) TCGA-CN-4727-01 17 61905529 61905529 G T PSMC5 Missense_Mutation p.G19V 0.30 deleterious(0.01) benign(0.367) TCGA-CN-4727-01 17 62049720 62049720 G A SCN4A Silent p.L128L 0.17 TCGA-CN-4727-01 17 62049989 62049989 G T SCN4A Silent p.P71P 0.15 TCGA-CN-4727-01 17 62855907 62855907 C A LRRC37A3 Missense_Mutation p.D1453Y 0.17 deleterious(0) probably_damaging(0.99) TCGA-CN-4727-01 17 65147297 65147297 C T HELZ Missense_Mutation p.V741M 0.17 deleterious(0) probably_damaging(0.996) TCGA-CN-4727-01 17 70120399 70120399 C A SOX9 Silent p.T467T 0.17 TCGA-CN-4727-01 17 73997456 73997456 G C CDK3 5'UTR 0.29 TCGA-CN-4727-01 17 74388027 74388027 C G UBE2O Missense_Mutation p.K1038N 0.24 deleterious(0) possibly_damaging(0.635) TCGA-CN-4727-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.60 TCGA-CN-4727-01 17 77914883 77914883 G A TBC1D16 Silent p.F693F 0.14 TCGA-CN-4727-01 17 79287662 79287662 G A TMEM105 Missense_Mutation p.P60L 0.17 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-CN-4727-01 18 59221456 59221456 A C CDH20 Missense_Mutation p.H645P 0.48 deleterious(0.01) possibly_damaging(0.729) TCGA-CN-4727-01 18 61569789 61569789 C A SERPINB2 Missense_Mutation p.T277N 0.47 tolerated(0.08) probably_damaging(0.993) TCGA-CN-4727-01 18 64197182 64197182 G C CDH19 Missense_Mutation p.S453W 0.56 deleterious(0.03) possibly_damaging(0.772) TCGA-CN-4727-01 18 65181244 65181244 C G DSEL Missense_Mutation p.W211S 0.52 tolerated(0.4) benign(0.012) TCGA-CN-4727-01 18 6956666 6956666 C A LAMA1 Missense_Mutation p.S2688I 0.11 tolerated(0.25) benign(0.004) TCGA-CN-4727-01 18 7038870 7038870 G C LAMA1 Missense_Mutation p.S501C 0.23 deleterious(0.03) possibly_damaging(0.682) TCGA-CN-4727-01 19 10610576 10610576 G T KEAP1 Missense_Mutation p.S45Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-CN-4727-01 19 11144002 11144002 C A SMARCA4 Missense_Mutation p.Q1195K 0.19 benign(0.24) TCGA-CN-4727-01 19 14268735 14268735 G A LPHN1 Missense_Mutation p.H837Y 0.28 deleterious(0.01) probably_damaging(1) TCGA-CN-4727-01 19 1455209 1455209 C G APC2 Missense_Mutation p.L159V 0.36 benign(0.122) TCGA-CN-4727-01 19 14938984 14938984 G T OR7A5 Missense_Mutation p.Q24K 0.37 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-CN-4727-01 19 15299972 15299972 G A NOTCH3 Silent p.C402C 0.21 TCGA-CN-4727-01 19 15918353 15918353 G A OR10H1 Silent p.H165H 0.40 TCGA-CN-4727-01 19 16001226 16001226 C T CYP4F2 Silent p.L181L 0.47 TCGA-CN-4727-01 19 17040011 17040011 T C CPAMD8 Missense_Mutation p.Q1009R 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-CN-4727-01 19 18368706 18368706 G A KIAA1683 Missense_Mutation p.R1130C 0.42 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 19 22940817 22940817 G A ZNF99 Nonsense_Mutation p.Q632* 0.35 TCGA-CN-4727-01 19 33117730 33117730 T G ANKRD27 Missense_Mutation p.Q475P 0.36 deleterious(0) benign(0.418) TCGA-CN-4727-01 19 36321757 36321757 C T NPHS1 Missense_Mutation p.E1195K 0.20 tolerated(0.16) benign(0.004) TCGA-CN-4727-01 19 39915308 39915308 C T PLEKHG2 Missense_Mutation p.P1179S 0.15 tolerated_low_confidence(0.09) benign(0.015) TCGA-CN-4727-01 19 40362807 40362807 G T FCGBP Missense_Mutation p.A5088D 0.40 possibly_damaging(0.9) TCGA-CN-4727-01 19 40771175 40771175 G T AKT2 5'UTR 0.28 TCGA-CN-4727-01 19 41009736 41009736 G T SPTBN4 Splice_Site p.X455_splice 0.31 TCGA-CN-4727-01 19 43268276 43268276 G T PSG8 Missense_Mutation p.D74E 0.24 deleterious(0.01) benign(0.365) TCGA-CN-4727-01 19 43372988 43372988 T C PSG1 Missense_Mutation p.N303S 0.15 tolerated(0.05) benign(0.267) TCGA-CN-4727-01 19 44610618 44610618 A - ZNF224 Frame_Shift_Del p.I103Sfs*9 0.31 TCGA-CN-4727-01 19 45873820 45873820 C A ERCC2 5'UTR 0.24 TCGA-CN-4727-01 19 46268861 46268861 C A SIX5 Silent p.L706L 0.38 TCGA-CN-4727-01 19 48176835 48176835 G A GLTSCR1 Missense_Mutation p.D2N 0.19 unknown(0) TCGA-CN-4727-01 19 4818041 4818041 C T TICAM1 Missense_Mutation p.A117T 0.16 deleterious(0) probably_damaging(0.999) TCGA-CN-4727-01 19 48949240 48949240 G T GRWD1 5'UTR 0.45 TCGA-CN-4727-01 19 52272482 52272482 C A FPR2 Missense_Mutation p.L191M 0.12 tolerated(0.37) benign(0.063) TCGA-CN-4727-01 19 55221424 55221424 T A AC098784.2 3'Flank 0.15 TCGA-CN-4727-01 19 56466176 56466176 C T NLRP8 Missense_Mutation p.T251M 0.19 tolerated(0.11) benign(0.025) TCGA-CN-4727-01 19 57176029 57176029 A T ZNF835 Missense_Mutation p.Y180N 0.53 tolerated(0.64) possibly_damaging(0.831) TCGA-CN-4727-01 19 57327145 57327145 G T PEG3 Missense_Mutation p.R889S 0.16 tolerated(0.7) benign(0.003) TCGA-CN-4727-01 19 57642105 57642105 C A USP29 Missense_Mutation p.H688N 0.19 tolerated(1) benign(0.002) TCGA-CN-4727-01 19 5768221 5768221 C G CATSPERD Silent p.T534T 0.11 TCGA-CN-4727-01 19 57803285 57803285 G T ZNF460 Missense_Mutation p.R459L 0.17 tolerated(0.4) benign(0.294) TCGA-CN-4727-01 19 6389458 6389458 C A GTF2F1 Missense_Mutation p.R108M 0.41 deleterious(0) benign(0.402) TCGA-CN-4727-01 19 6430127 6430127 G C SLC25A41 Missense_Mutation p.Q137E 0.48 tolerated(0.16) benign(0.05) TCGA-CN-4727-01 19 6686812 6686812 G A C3 Silent p.A1197A 0.40 TCGA-CN-4727-01 19 6707204 6707204 G C C3 Missense_Mutation p.R710G 0.18 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 1 100672035 100672035 G - DBT Frame_Shift_Del p.T392Kfs*21 0.17 TCGA-CN-4727-01 1 102312602 102312602 C G OLFM3 Intron 0.22 TCGA-CN-4727-01 1 103381240 103381240 C A COL11A1 Missense_Mutation p.G1255C 0.38 unknown(0) TCGA-CN-4727-01 1 103480115 103480115 G - COL11A1 Frame_Shift_Del p.I509Sfs*19 0.29 TCGA-CN-4727-01 1 103488414 103488414 C A COL11A1 Missense_Mutation p.D377Y 0.16 possibly_damaging(0.772) TCGA-CN-4727-01 1 120462937 120462937 G C NOTCH2 Missense_Mutation p.D1798E 0.35 deleterious(0) probably_damaging(0.996) TCGA-CN-4727-01 1 1267466 1267466 C A TAS1R3 Silent p.R185R 0.33 TCGA-CN-4727-01 1 150129588 150129588 G C PLEKHO1 Missense_Mutation p.E145Q 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-CN-4727-01 1 155236610 155236610 T A CLK2 Missense_Mutation p.T249S 0.34 deleterious(0) possibly_damaging(0.762) TCGA-CN-4727-01 1 155851056 155851056 G A SYT11 Silent p.K351K 0.13 TCGA-CN-4727-01 1 158582745 158582745 G T SPTA1 Silent p.G2332G 0.30 TCGA-CN-4727-01 1 158735613 158735613 G T OR6N1 Missense_Mutation p.P287H 0.16 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 1 16255029 16255029 G A SPEN Missense_Mutation p.S765N 0.14 probably_damaging(0.985) TCGA-CN-4727-01 1 166974632 166974632 A T MAEL Silent p.T281T 0.34 TCGA-CN-4727-01 1 166987197 166987197 G T MAEL Splice_Site p.X347_splice 0.30 TCGA-CN-4727-01 1 169394069 169394069 T - CCDC181 Frame_Shift_Del p.S33Vfs*5 0.25 TCGA-CN-4727-01 1 172357712 172357712 G T DNM3 Splice_Site p.X762_splice 0.28 TCGA-CN-4727-01 1 176525640 176525640 C G PAPPA2 Missense_Mutation p.A61G 0.31 deleterious_low_confidence(0.01) benign(0.204) TCGA-CN-4727-01 1 181727125 181727125 C T CACNA1E Missense_Mutation p.R1458C 0.18 deleterious(0.03) possibly_damaging(0.689) TCGA-CN-4727-01 1 183177137 183177137 G A LAMC2 Silent p.K67K 0.36 TCGA-CN-4727-01 1 192547358 192547358 A - RGS1 Frame_Shift_Del p.N97Mfs*7 0.29 TCGA-CN-4727-01 1 201061195 201061195 G A CACNA1S Missense_Mutation p.T149I 0.37 tolerated_low_confidence(0.06) benign(0.07) TCGA-CN-4727-01 1 203018892 203018892 C A PPFIA4 5'Flank 0.38 TCGA-CN-4727-01 1 204923419 204923419 G T NFASC Missense_Mutation p.G107W 0.23 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 1 214170736 214170736 C T PROX1 Silent p.A286A 0.28 TCGA-CN-4727-01 1 214171345 214171345 G A PROX1 Missense_Mutation p.M489I 0.27 deleterious(0.03) possibly_damaging(0.874) TCGA-CN-4727-01 1 214551325 214551325 T A PTPN14 Missense_Mutation p.T889S 0.33 tolerated(0.68) benign(0.002) TCGA-CN-4727-01 1 222700357 222700357 C A HHIPL2 Missense_Mutation p.A587S 0.34 deleterious(0.04) benign(0.26) TCGA-CN-4727-01 1 228879196 228879196 G T RHOU Missense_Mutation p.Q162H 0.34 deleterious(0) probably_damaging(0.999) TCGA-CN-4727-01 1 236154329 236154329 G T NID1 Missense_Mutation p.Q929K 0.42 tolerated(0.29) benign(0.017) TCGA-CN-4727-01 1 236647634 236647634 T A EDARADD 3'Flank 0.36 TCGA-CN-4727-01 1 240070839 240070839 C - CHRM3 Frame_Shift_Del p.P31Rfs*44 0.36 TCGA-CN-4727-01 1 240964755 240964755 C G RGS7 Silent p.V471V 0.07 TCGA-CN-4727-01 1 246805333 246805333 G A CNST Missense_Mutation p.E311K 0.20 tolerated(0.62) benign(0.02) TCGA-CN-4727-01 1 247875543 247875543 C A OR6F1 Missense_Mutation p.R172L 0.25 deleterious(0.01) benign(0.112) TCGA-CN-4727-01 1 247875544 247875544 G C OR6F1 Missense_Mutation p.R172G 0.25 tolerated(0.05) benign(0.112) TCGA-CN-4727-01 1 248525300 248525300 G T OR2T4 Missense_Mutation p.A140S 0.16 tolerated(0.32) benign(0.097) TCGA-CN-4727-01 1 248636987 248636987 G T OR2T3 Silent p.L112L 0.35 TCGA-CN-4727-01 1 248737450 248737450 G T OR2T34 Silent p.L203L 0.18 TCGA-CN-4727-01 1 248844884 248844884 G A OR14I1 Missense_Mutation p.P241L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4727-01 1 25254161 25254161 C A RUNX3 Nonsense_Mutation p.E129* 0.27 TCGA-CN-4727-01 1 29095450 29095450 G A YTHDF2 Missense_Mutation p.G576S 0.11 tolerated_low_confidence(0.41) benign(0.017) TCGA-CN-4727-01 1 33832992 33832992 G A PHC2 Missense_Mutation p.A234V 0.32 deleterious(0.03) benign(0.212) TCGA-CN-4727-01 1 35350638 35350638 G C DLGAP3 Silent p.T647T 0.32 TCGA-CN-4727-01 1 36933736 36933736 C G CSF3R Missense_Mutation p.G555R 0.35 tolerated(0.31) benign(0.111) TCGA-CN-4727-01 1 43637850 43637850 C A EBNA1BP2 Intron 0.33 TCGA-CN-4727-01 1 44685699 44685699 G A DMAP1 Silent p.P354P 0.15 TCGA-CN-4727-01 1 51768088 51768088 C A TTC39A Missense_Mutation p.G282C 0.12 deleterious(0) probably_damaging(0.99) TCGA-CN-4727-01 1 53972261 53972261 G T GLIS1 3'UTR 0.11 TCGA-CN-4727-01 1 57528566 57528566 T A DAB1 Missense_Mutation p.Q238H 0.21 tolerated(0.66) benign(0.003) TCGA-CN-4727-01 1 60463339 60463339 C G C1orf87 Missense_Mutation p.W474C 0.28 deleterious(0) probably_damaging(0.999) TCGA-CN-4727-01 1 67861485 67861485 A G IL12RB2 Missense_Mutation p.K768E 0.24 deleterious(0) possibly_damaging(0.792) TCGA-CN-4727-01 1 67891881 67891881 C A SERBP1 Missense_Mutation p.R134L 0.29 deleterious(0.02) possibly_damaging(0.866) TCGA-CN-4727-01 1 74833001 74833001 T C FPGT-TNNI3K Silent p.C527C 0.30 TCGA-CN-4727-01 1 79093997 79093997 G T IFI44L Missense_Mutation p.D133Y 0.26 tolerated(0.07) benign(0.005) TCGA-CN-4727-01 1 979269 979269 G T AGRN Missense_Mutation p.R622L 0.09 tolerated(0.07) possibly_damaging(0.871) TCGA-CN-4727-01 20 1552462 1552462 C T SIRPB1 Missense_Mutation p.G219R 0.31 tolerated(0.15) benign(0.03) TCGA-CN-4727-01 20 1961152 1961152 G A PDYN Silent p.D194D 0.36 TCGA-CN-4727-01 20 24646171 24646171 G T SYNDIG1 3'UTR 0.14 TCGA-CN-4727-01 20 330327 330327 G T NRSN2 Missense_Mutation p.G14C 0.36 deleterious(0.01) probably_damaging(0.964) TCGA-CN-4727-01 20 39317053 39317053 C A MAFB Silent p.P146P 0.47 TCGA-CN-4727-01 20 57767409 57767409 C A ZNF831 Silent p.P445P 0.17 TCGA-CN-4727-01 20 9561465 9561465 G A PAK7 Missense_Mutation p.P106L 0.40 deleterious(0.01) benign(0.004) TCGA-CN-4727-01 21 10910304 10910304 C A TPTE Intron 0.13 TCGA-CN-4727-01 21 10944708 10944708 A G TPTE Missense_Mutation p.Y176H 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-CN-4727-01 21 15748099 15748099 C A HSPA13 Missense_Mutation p.A208S 0.35 deleterious(0.03) possibly_damaging(0.685) TCGA-CN-4727-01 21 15870888 15870888 T C SAMSN1 Missense_Mutation p.N333S 0.25 deleterious(0) probably_damaging(0.993) TCGA-CN-4727-01 21 28338240 28338240 C A ADAMTS5 Silent p.A157A 0.15 TCGA-CN-4727-01 21 30391545 30391545 C T RWDD2B Silent p.G18G 0.35 TCGA-CN-4727-01 21 32127484 32127484 G T KRTAP21-1 Nonsense_Mutation p.C71* 0.15 TCGA-CN-4727-01 21 41516604 41516604 G - DSCAM Frame_Shift_Del p.R1025Efs*30 0.24 TCGA-CN-4727-01 22 17451084 17451084 C G GAB4 Splice_Site p.X229_splice 0.22 TCGA-CN-4727-01 22 19127505 19127505 G A DGCR14 Silent p.L145L 0.37 TCGA-CN-4727-01 22 20796299 20796299 C T KLHL22 3'UTR 0.45 TCGA-CN-4727-01 22 29664199 29664199 C - EWSR1 5'Flank 0.17 TCGA-CN-4727-01 22 32889195 32889195 G C FBXO7 Silent p.A357A 0.32 TCGA-CN-4727-01 22 37266473 37266473 C G NCF4 Missense_Mutation p.P120R 0.22 deleterious(0) probably_damaging(0.996) TCGA-CN-4727-01 22 45779421 45779421 T C SMC1B Missense_Mutation p.K662E 0.38 deleterious(0.03) probably_damaging(0.962) TCGA-CN-4727-01 22 50552123 50552123 T G MOV10L1 Missense_Mutation p.L264V 0.29 deleterious(0.02) possibly_damaging(0.53) TCGA-CN-4727-01 2 100625372 100625372 C T AFF3 Missense_Mutation p.A51T 0.18 deleterious(0.05) benign(0.002) TCGA-CN-4727-01 2 115200370 115200370 C A DPP10 Silent p.A5A 0.24 TCGA-CN-4727-01 2 11741112 11741112 C T GREB1 Silent p.S840S 0.21 TCGA-CN-4727-01 2 11758774 11758774 T C GREB1 Missense_Mutation p.I1258T 0.38 tolerated(0.67) benign(0.004) TCGA-CN-4727-01 2 128414981 128414981 T G LIMS2 Missense_Mutation p.Y80S 0.34 deleterious(0) probably_damaging(0.998) TCGA-CN-4727-01 2 12880596 12880596 C T TRIB2 Silent p.D236D 0.14 TCGA-CN-4727-01 2 130832896 130832896 A G POTEF Missense_Mutation p.C717R 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CN-4727-01 2 136872794 136872794 C G CXCR4 Missense_Mutation p.R239P 0.35 deleterious(0) probably_damaging(0.999) TCGA-CN-4727-01 2 138376011 138376011 C T THSD7B Silent p.V1208V 0.12 TCGA-CN-4727-01 2 157182511 157182511 C A NR4A2 Missense_Mutation p.E514D 0.12 tolerated(0.89) benign(0.047) TCGA-CN-4727-01 2 1677464 1677464 G A PXDN Silent p.A323A 0.18 TCGA-CN-4727-01 2 168115442 168115442 G T XIRP2 3'UTR 0.26 TCGA-CN-4727-01 2 170063612 170063612 C A LRP2 Missense_Mutation p.W2206C 0.31 probably_damaging(1) TCGA-CN-4727-01 2 171702239 171702240 - G GAD1 Frame_Shift_Ins p.A299Gfs*8 0.32 TCGA-CN-4727-01 2 179529453 179529453 G T TTN Missense_Mutation p.L12044I 0.60 TCGA-CN-4727-01 2 179593122 179593122 G T TTN Missense_Mutation p.Q6477K 0.46 TCGA-CN-4727-01 2 185803442 185803442 G T ZNF804A Missense_Mutation p.A1107S 0.42 deleterious(0) probably_damaging(0.982) TCGA-CN-4727-01 2 185803545 185803545 C A ZNF804A Missense_Mutation p.T1141N 0.50 deleterious(0) probably_damaging(0.981) TCGA-CN-4727-01 2 1906998 1906998 G C MYT1L Missense_Mutation p.T627R 0.26 deleterious(0) probably_damaging(0.989) TCGA-CN-4727-01 2 212488770 212488770 C A ERBB4 Splice_Site p.X694_splice 0.55 TCGA-CN-4727-01 2 220083227 220083227 C A ABCB6 Missense_Mutation p.A57S 0.42 tolerated(0.84) benign(0.008) TCGA-CN-4727-01 2 24255744 24255744 T C C2orf44 Missense_Mutation p.T631A 0.18 tolerated(0.47) benign(0.027) TCGA-CN-4727-01 2 25383938 25383938 C T POMC 3'UTR 0.19 TCGA-CN-4727-01 2 33411996 33411996 C A LTBP1 Missense_Mutation p.F425L 0.36 deleterious(0.02) benign(0.41) TCGA-CN-4727-01 2 33525538 33525538 G T LTBP1 Missense_Mutation p.G1086W 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4727-01 2 58276056 58276056 A T VRK2 Silent p.V30V 0.19 TCGA-CN-4727-01 2 61275876 61275876 G - PEX13 Frame_Shift_Del p.D397Mfs*32 0.17 TCGA-CN-4727-01 2 71742778 71742778 G A DYSF Missense_Mutation p.R262H 0.25 deleterious(0) benign(0.3) TCGA-CN-4727-01 2 74789507 74789507 G C M1AP Missense_Mutation p.P373R 0.26 tolerated(0.6) benign(0.002) TCGA-CN-4727-01 2 76975838 76975838 C G LRRTM4 Missense_Mutation p.E586Q 0.25 deleterious_low_confidence(0) benign(0.263) TCGA-CN-4727-01 2 79349177 79349177 T A REG1A Missense_Mutation p.F83I 0.20 deleterious(0) possibly_damaging(0.867) TCGA-CN-4727-01 2 79363286 79363286 G T REG1P RNA 0.31 TCGA-CN-4727-01 3 101572505 101572505 A T NFKBIZ Missense_Mutation p.S379C 0.31 deleterious_low_confidence(0.02) benign(0.199) TCGA-CN-4727-01 3 105377725 105377725 C A CBLB 3'UTR 0.34 TCGA-CN-4727-01 3 109049335 109049335 C A DPPA4 Intron 0.29 TCGA-CN-4727-01 3 113323815 113323815 T A SIDT1 Missense_Mutation p.Y466N 0.25 deleterious(0) possibly_damaging(0.893) TCGA-CN-4727-01 3 113858352 113858352 G T DRD3 Missense_Mutation p.Q240K 0.26 tolerated(0.83) benign(0.087) TCGA-CN-4727-01 3 120121736 120121736 C T FSTL1 Missense_Mutation p.D242N 0.28 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 3 121195496 121195496 C A POLQ Missense_Mutation p.C2099F 0.28 tolerated(0.07) possibly_damaging(0.646) TCGA-CN-4727-01 3 127783719 127783719 G A SEC61A1 Splice_Site p.X206_splice 0.34 TCGA-CN-4727-01 3 130285860 130285860 C A COL6A6 Silent p.R533R 0.25 TCGA-CN-4727-01 3 1337387 1337387 T A CNTN6 Missense_Mutation p.V186E 0.22 deleterious(0) possibly_damaging(0.746) TCGA-CN-4727-01 3 141464220 141464220 C T RNF7 3'UTR 0.50 TCGA-CN-4727-01 3 150911327 150911327 G T MED12L Missense_Mutation p.L673F 0.49 tolerated(0.72) benign(0.121) TCGA-CN-4727-01 3 164741477 164741477 C T SI Missense_Mutation p.G994S 0.24 deleterious(0.03) possibly_damaging(0.626) TCGA-CN-4727-01 3 169546666 169546666 G T LRRIQ4 Silent p.G380G 0.17 TCGA-CN-4727-01 3 170912383 170912383 C G TNIK Silent p.L116L 0.47 TCGA-CN-4727-01 3 186512478 186512478 C - RFC4 Frame_Shift_Del p.A127Lfs*3 0.08 TCGA-CN-4727-01 3 32933213 32933213 G A TRIM71 Silent p.G839G 0.17 TCGA-CN-4727-01 3 45800531 45800531 G T SLC6A20 Missense_Mutation p.A573E 0.50 deleterious(0.04) benign(0.306) TCGA-CN-4727-01 3 46944837 46944837 C A PTH1R Missense_Mutation p.S491R 0.48 deleterious(0) probably_damaging(0.999) TCGA-CN-4727-01 3 48696506 48696506 G T CELSR3 Missense_Mutation p.P1188T 0.53 deleterious(0) probably_damaging(0.999) TCGA-CN-4727-01 3 49050668 49050668 C G WDR6 Missense_Mutation p.H597Q 0.07 deleterious(0) possibly_damaging(0.623) TCGA-CN-4727-01 3 52526337 52526337 G A NISCH Missense_Mutation p.G1452R 0.50 deleterious(0) probably_damaging(0.996) TCGA-CN-4727-01 3 74334568 74334568 G C CNTN3 Silent p.A864A 0.21 TCGA-CN-4727-01 3 77629206 77629206 G A ROBO2 Missense_Mutation p.E829K 0.45 deleterious(0.01) possibly_damaging(0.621) TCGA-CN-4727-01 3 86114784 86114784 C G CADM2 Missense_Mutation p.P367A 0.51 tolerated(0.25) benign(0.041) TCGA-CN-4727-01 3 93615516 93615516 G A PROS1 Missense_Mutation p.P290L 0.25 deleterious(0) benign(0.374) TCGA-CN-4727-01 3 99514875 99514875 C A COL8A1 Silent p.P710P 0.25 TCGA-CN-4727-01 4 10444677 10444677 C A ZNF518B 3'UTR 0.42 TCGA-CN-4727-01 4 113540786 113540786 C A C4orf21 Missense_Mutation p.A138S 0.25 tolerated(0.2) benign(0.018) TCGA-CN-4727-01 4 114238951 114238951 A G ANK2 Missense_Mutation p.I928V 0.34 benign(0.017) TCGA-CN-4727-01 4 145039886 145039886 G T GYPA Silent p.A84A 0.25 TCGA-CN-4727-01 4 146071686 146071687 CG A OTUD4 Frame_Shift_Del p.R348* 0.08 TCGA-CN-4727-01 4 155256095 155256095 T A DCHS2 Nonsense_Mutation p.K381* 0.33 TCGA-CN-4727-01 4 169201720 169201720 C A DDX60 Missense_Mutation p.A582S 0.26 tolerated(0.11) benign(0.018) TCGA-CN-4727-01 4 169348297 169348297 A G DDX60L Silent p.N618N 0.35 TCGA-CN-4727-01 4 175896751 175896751 C T ADAM29 Silent p.P25P 0.30 TCGA-CN-4727-01 4 177142615 177142615 T C ASB5 Missense_Mutation p.E174G 0.16 deleterious(0) probably_damaging(0.951) TCGA-CN-4727-01 4 178283595 178283595 G T NEIL3 Silent p.G596G 0.29 TCGA-CN-4727-01 4 2306406 2306406 G T ZFYVE28 Missense_Mutation p.T554N 0.13 tolerated_low_confidence(0.5) benign(0.104) TCGA-CN-4727-01 4 25256888 25256888 G A PI4K2B Splice_Site p.X208_splice 0.21 TCGA-CN-4727-01 4 25780751 25780751 G A SEL1L3 Silent p.Y844Y 0.17 TCGA-CN-4727-01 4 46060593 46060593 G - GABRG1 Frame_Shift_Del p.V225* 0.24 TCGA-CN-4727-01 4 56283323 56283323 G C TMEM165 Missense_Mutation p.R173T 0.17 deleterious(0) possibly_damaging(0.76) TCGA-CN-4727-01 4 56283406 56283406 G C TMEM165 Missense_Mutation p.D201H 0.18 deleterious(0) probably_damaging(0.94) TCGA-CN-4727-01 4 66189751 66189751 C G EPHA5 3'UTR 0.26 TCGA-CN-4727-01 4 71020042 71020042 A G C4orf40 5'UTR 0.29 TCGA-CN-4727-01 4 72897871 72897871 G A NPFFR2 Missense_Mutation p.A85T 0.34 deleterious_low_confidence(0.01) benign(0.001) TCGA-CN-4727-01 4 73012843 73012843 A G NPFFR2 Missense_Mutation p.R295G 0.29 tolerated(0.35) possibly_damaging(0.568) TCGA-CN-4727-01 4 737282 737282 G C PCGF3 Missense_Mutation p.E95Q 0.17 tolerated(0.12) benign(0.018) TCGA-CN-4727-01 4 786337 786337 C A CPLX1 Missense_Mutation p.A31S 0.20 tolerated(0.3) benign(0.277) TCGA-CN-4727-01 4 82380494 82380494 A T RASGEF1B Missense_Mutation p.Y57N 0.34 deleterious(0.03) possibly_damaging(0.71) TCGA-CN-4727-01 4 88036203 88036203 G A AFF1 Missense_Mutation p.D740N 0.29 tolerated(0.16) unknown(0) TCGA-CN-4727-01 5 101597728 101597728 G T SLCO4C1 Silent p.V303V 0.19 TCGA-CN-4727-01 5 102491630 102491630 G A PPIP5K2 Missense_Mutation p.G474E 0.34 deleterious(0) probably_damaging(0.976) TCGA-CN-4727-01 5 10262656 10262656 G A CCT5 Missense_Mutation p.D415N 0.18 tolerated(0.12) possibly_damaging(0.524) TCGA-CN-4727-01 5 110835766 110835766 C T STARD4 Missense_Mutation p.V146I 0.24 deleterious(0.05) benign(0.024) TCGA-CN-4727-01 5 115298688 115298688 T C AQPEP Missense_Mutation p.L125S 0.24 tolerated(0.11) benign(0.243) TCGA-CN-4727-01 5 131630517 131630517 C A SLC22A4 Silent p.R70R 0.18 TCGA-CN-4727-01 5 137206561 137206561 A T MYOT Missense_Mutation p.K74M 0.29 tolerated(0.17) benign(0.006) TCGA-CN-4727-01 5 13721328 13721328 C A DNAH5 Missense_Mutation p.M4020I 0.47 benign(0.072) TCGA-CN-4727-01 5 13792157 13792157 A G DNAH5 Silent p.S2798S 0.13 TCGA-CN-4727-01 5 140175845 140175845 G A PCDHA2 Silent p.S432S 0.25 TCGA-CN-4727-01 5 140203530 140203530 G T PCDHA5 Missense_Mutation p.A724S 0.32 deleterious_low_confidence(0.05) benign(0.101) TCGA-CN-4727-01 5 140215375 140215375 G T PCDHA7 Silent p.P469P 0.27 TCGA-CN-4727-01 5 140389511 140389511 A T PCDHAC1 Missense_Mutation p.S961C 0.27 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CN-4727-01 5 140531310 140531310 C A PCDHB6 Missense_Mutation p.P491H 0.12 deleterious(0) benign(0.344) TCGA-CN-4727-01 5 140589727 140589727 G A PCDHB12 Silent p.E416E 0.22 TCGA-CN-4727-01 5 140711622 140711622 C A PCDHGA1 Nonsense_Mutation p.Y457* 0.25 TCGA-CN-4727-01 5 140723908 140723908 T A PCDHGA3 Missense_Mutation p.L103Q 0.28 tolerated_low_confidence(0.11) possibly_damaging(0.45) TCGA-CN-4727-01 5 140768224 140768224 G T PCDHGB4 Missense_Mutation p.G258V 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-4727-01 5 1474683 1474683 C A LPCAT1 Silent p.R339R 0.48 TCGA-CN-4727-01 5 148427468 148427468 C G SH3TC2 Missense_Mutation p.W79S 0.22 tolerated(0.11) probably_damaging(0.986) TCGA-CN-4727-01 5 158750296 158750296 C A IL12B Nonsense_Mutation p.E44* 0.25 TCGA-CN-4727-01 5 176638275 176638275 G T NSD1 Nonsense_Mutation p.G959* 0.24 TCGA-CN-4727-01 5 176707725 176707725 G T NSD1 Nonsense_Mutation p.G1928* 0.20 TCGA-CN-4727-01 5 179743383 179743384 - T GFPT2 Frame_Shift_Ins p.P411Tfs*6 0.16 TCGA-CN-4727-01 5 21755861 21755861 C G CDH12 Missense_Mutation p.S575T 0.18 deleterious(0.01) possibly_damaging(0.516) TCGA-CN-4727-01 5 23522816 23522816 C G PRDM9 Missense_Mutation p.P235R 0.34 deleterious(0) possibly_damaging(0.679) TCGA-CN-4727-01 5 23527713 23527713 G A PRDM9 Missense_Mutation p.R839Q 0.27 tolerated(0.28) probably_damaging(0.994) TCGA-CN-4727-01 5 35065550 35065550 C A PRLR Missense_Mutation p.A504S 0.30 tolerated(0.29) benign(0.131) TCGA-CN-4727-01 5 38486048 38486048 G A LIFR Silent p.D790D 0.15 TCGA-CN-4727-01 5 39135036 39135036 C T FYB Silent p.K542K 0.42 TCGA-CN-4727-01 5 40931225 40931225 G A C7 Missense_Mutation p.G41D 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-CN-4727-01 5 5463278 5463278 C A KIAA0947 Nonsense_Mutation p.C1277* 0.12 TCGA-CN-4727-01 5 7727344 7727344 T A ADCY2 Missense_Mutation p.I614N 0.45 tolerated(0.19) benign(0.168) TCGA-CN-4727-01 5 80168934 80168934 G T MSH3 Splice_Site p.X1044_splice 0.23 TCGA-CN-4727-01 5 88027668 88027668 C T MEF2C Missense_Mutation p.G248S 0.23 deleterious(0) probably_damaging(0.986) TCGA-CN-4727-01 5 90073745 90073745 T C GPR98 Missense_Mutation p.L4184S 0.25 benign(0.009) TCGA-CN-4727-01 5 94619883 94619883 C A MCTP1 Missense_Mutation p.V133L 0.22 tolerated_low_confidence(0.61) benign(0) TCGA-CN-4727-01 6 106987308 106987308 G A AIM1 Silent p.Q1175Q 0.17 TCGA-CN-4727-01 6 109965891 109965891 C T AK9 Missense_Mutation p.E254K 0.18 tolerated(0.06) benign(0.013) TCGA-CN-4727-01 6 112469437 112469437 G T LAMA4 Missense_Mutation p.L759I 0.20 tolerated(0.07) benign(0.042) TCGA-CN-4727-01 6 127797032 127797032 G T SOGA3 Missense_Mutation p.N713K 0.18 tolerated(0.07) probably_damaging(0.931) TCGA-CN-4727-01 6 133769305 133769305 T A EYA4 Missense_Mutation p.S89T 0.28 tolerated_low_confidence(0.33) benign(0.215) TCGA-CN-4727-01 6 134305618 134305618 G A TBPL1 Splice_Site p.X129_splice 0.24 TCGA-CN-4727-01 6 135788738 135788738 T C AHI1 Missense_Mutation p.K57R 0.22 tolerated(0.17) benign(0.005) TCGA-CN-4727-01 6 136596736 136596736 G T BCLAF1 Missense_Mutation p.Q596K 0.06 tolerated(0.06) benign(0.092) TCGA-CN-4727-01 6 146244822 146244822 T A SHPRH Missense_Mutation p.S1168C 0.35 tolerated(0.22) benign(0.003) TCGA-CN-4727-01 6 146865142 146865142 C G RAB32 Nonsense_Mutation p.Y45* 0.17 TCGA-CN-4727-01 6 152640010 152640010 T A SYNE1 Missense_Mutation p.K5459N 0.16 benign(0.305) TCGA-CN-4727-01 6 152702445 152702445 G C SYNE1 Missense_Mutation p.S2902W 0.17 possibly_damaging(0.624) TCGA-CN-4727-01 6 155578189 155578189 C G TIAM2 Silent p.V1680V 0.16 TCGA-CN-4727-01 6 155743931 155743931 C T NOX3 Missense_Mutation p.C402Y 0.14 deleterious(0) benign(0.001) TCGA-CN-4727-01 6 160511018 160511018 A G IGF2R Missense_Mutation p.I2180V 0.40 tolerated(0.24) benign(0.222) TCGA-CN-4727-01 6 162683695 162683695 C - PARK2 Frame_Shift_Del p.A92Rfs*11 0.22 TCGA-CN-4727-01 6 165749685 165749685 C G PDE10A Missense_Mutation p.A732P 0.11 deleterious(0.01) possibly_damaging(0.552) TCGA-CN-4727-01 6 167585706 167585706 G T TCP10L2 Missense_Mutation p.G25V 0.37 deleterious_low_confidence(0.01) benign(0.241) TCGA-CN-4727-01 6 170102735 170102735 C A C6orf120 Missense_Mutation p.N60K 0.36 deleterious(0.02) benign(0.439) TCGA-CN-4727-01 6 26032089 26032089 G C HIST1H3B Missense_Mutation p.P67R 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-4727-01 6 26451920 26451920 C A BTN3A3 Missense_Mutation p.P346T 0.34 deleterious(0) probably_damaging(0.998) TCGA-CN-4727-01 6 28120855 28120855 A G ZKSCAN8 Missense_Mutation p.N266S 0.13 tolerated(0.41) benign(0.171) TCGA-CN-4727-01 6 28547174 28547174 T G SCAND3 Missense_Mutation p.Q148P 0.12 tolerated_low_confidence(0.24) benign(0.002) TCGA-CN-4727-01 6 29231808 29231808 C A XXbac-BPG308J9.3 RNA 0.44 TCGA-CN-4727-01 6 29275361 29275361 C A OR14J1 Missense_Mutation p.L299M 0.46 tolerated(0.06) possibly_damaging(0.714) TCGA-CN-4727-01 6 29408401 29408401 C A OR10C1 Silent p.A203A 0.34 TCGA-CN-4727-01 6 32805816 32805816 C G TAP2 Silent p.L65L 0.20 TCGA-CN-4727-01 6 46518071 46518071 A C CYP39A1 3'UTR 0.18 TCGA-CN-4727-01 6 46800982 46800982 G A MEP1A Missense_Mutation p.R439Q 0.23 tolerated(0.16) benign(0.411) TCGA-CN-4727-01 6 51732776 51732776 G C PKHD1 Missense_Mutation p.L2540V 0.13 tolerated(0.07) benign(0.157) TCGA-CN-4727-01 6 56496758 56496758 G A DST Missense_Mutation p.R759W 0.24 possibly_damaging(0.742) TCGA-CN-4727-01 6 69646437 69646437 C T BAI3 Nonsense_Mutation p.Q299* 0.43 TCGA-CN-4727-01 6 69646438 69646438 A C BAI3 Missense_Mutation p.Q299P 0.41 tolerated(1) probably_damaging(0.995) TCGA-CN-4727-01 6 74073333 74073333 G A KHDC3L Missense_Mutation p.R135Q 0.20 tolerated(0.66) benign(0.004) TCGA-CN-4727-01 6 80201313 80201313 G A LCA5 Missense_Mutation p.L364F 0.17 tolerated(0.1) benign(0.053) TCGA-CN-4727-01 6 90472244 90472244 T G MDN1 Missense_Mutation p.K717T 0.20 probably_damaging(1) TCGA-CN-4727-01 6 97051592 97051592 C A FHL5 Missense_Mutation p.R35S 0.32 tolerated(1) benign(0.004) TCGA-CN-4727-01 6 97053872 97053872 C A FHL5 Silent p.I143I 0.32 TCGA-CN-4727-01 6 97562024 97562024 C A KLHL32 Silent p.P331P 0.20 TCGA-CN-4727-01 7 113519481 113519481 C T PPP1R3A Missense_Mutation p.G556R 0.30 tolerated(0.09) benign(0.312) TCGA-CN-4727-01 7 120764512 120764512 C A CPED1 Missense_Mutation p.P349Q 0.24 tolerated(0.09) benign(0.43) TCGA-CN-4727-01 7 137206698 137206698 G C DGKI Missense_Mutation p.P721R 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-CN-4727-01 7 142028185 142028185 T C TRBV6-1 Missense_Mutation p.I3T 0.31 tolerated(0.43) benign(0.001) TCGA-CN-4727-01 7 142028219 142028219 G A TRBV6-1 Silent p.L14L 0.14 TCGA-CN-4727-01 7 142494075 142494075 C A TRBJ2-1 Missense_Mutation p.P10Q 0.31 unknown(0) TCGA-CN-4727-01 7 142605970 142605970 C T TRPV5 Missense_Mutation p.E634K 0.29 tolerated(0.17) benign(0.081) TCGA-CN-4727-01 7 147844745 147844745 G C CNTNAP2 Missense_Mutation p.R906P 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-CN-4727-01 7 150500795 150500795 T A TMEM176A Missense_Mutation p.Y144N 0.32 tolerated(0.13) benign(0.002) TCGA-CN-4727-01 7 154519576 154519576 C T DPP6 Missense_Mutation p.L288F 0.30 deleterious(0) probably_damaging(0.992) TCGA-CN-4727-01 7 154684473 154684473 A G DPP6 3'UTR 0.38 TCGA-CN-4727-01 7 158445168 158445168 C T NCAPG2 Silent p.K917K 0.25 TCGA-CN-4727-01 7 18975437 18975437 G T HDAC9 Missense_Mutation p.G937C 0.35 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 7 20198323 20198323 C A MACC1 Missense_Mutation p.G554V 0.13 deleterious(0) probably_damaging(0.965) TCGA-CN-4727-01 7 38293005 38293005 T A TRGJ2 Missense_Mutation p.S10C 0.11 unknown(0) TCGA-CN-4727-01 7 38431464 38431464 T A AMPH Missense_Mutation p.Q588L 0.47 tolerated(0.08) benign(0.06) TCGA-CN-4727-01 7 38530704 38530704 C G AMPH Silent p.V114V 0.40 TCGA-CN-4727-01 7 44184836 44184836 T A GCK Missense_Mutation p.S434C 0.37 tolerated(0.08) benign(0.001) TCGA-CN-4727-01 7 44259804 44259804 T A CAMK2B Missense_Mutation p.I620F 0.16 deleterious_low_confidence(0) benign(0.378) TCGA-CN-4727-01 7 44880522 44880522 C A H2AFV Silent p.A57A 0.15 TCGA-CN-4727-01 7 44924479 44924479 A T PURB Missense_Mutation p.F157I 0.30 tolerated(1) possibly_damaging(0.542) TCGA-CN-4727-01 7 47870817 47870817 G C PKD1L1 Nonsense_Mutation p.Y2157* 0.41 TCGA-CN-4727-01 7 48356867 48356867 C T ABCA13 Missense_Mutation p.P3325S 0.11 benign(0.125) TCGA-CN-4727-01 7 6066485 6066485 C A EIF2AK1 Silent p.P546P 0.35 TCGA-CN-4727-01 7 7400084 7400084 T G COL28A1 Missense_Mutation p.T1048P 0.37 tolerated(0.5) benign(0.001) TCGA-CN-4727-01 7 75174442 75174442 C T HIP1 Nonsense_Mutation p.W868* 0.24 TCGA-CN-4727-01 7 77256227 77256227 A C PTPN12 Missense_Mutation p.K411Q 0.14 tolerated(0.1) probably_damaging(0.916) TCGA-CN-4727-01 7 81620521 81620521 A T CACNA2D1 Silent p.P592P 0.13 TCGA-CN-4727-01 7 93106955 93106955 A G CALCR Silent p.D95D 0.29 TCGA-CN-4727-01 7 93628607 93628607 C A BET1 Splice_Site p.X7_splice 0.33 TCGA-CN-4727-01 8 10465328 10465328 C T RP1L1 Missense_Mutation p.A2094T 0.48 unknown(0) TCGA-CN-4727-01 8 110448575 110448575 C G PKHD1L1 Missense_Mutation p.L1172V 0.09 tolerated(0.35) benign(0.036) TCGA-CN-4727-01 8 110535590 110535590 C T PKHD1L1 Silent p.Y4153Y 0.45 TCGA-CN-4727-01 8 113599296 113599296 T A CSMD3 Missense_Mutation p.K1295M 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-CN-4727-01 8 117658759 117658759 G C EIF3H Silent p.L304L 0.13 TCGA-CN-4727-01 8 134031938 134031938 G A TG Missense_Mutation p.V2292M 0.12 tolerated(0.27) benign(0.063) TCGA-CN-4727-01 8 139158221 139158221 A G FAM135B Missense_Mutation p.L1174P 0.24 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 8 139833581 139833581 C A COL22A1 Missense_Mutation p.R348M 0.15 unknown(0) TCGA-CN-4727-01 8 144682010 144682010 A T TIGD5 3'UTR 0.51 TCGA-CN-4727-01 8 144810245 144810245 C T FAM83H Silent p.P462P 0.10 TCGA-CN-4727-01 8 144900183 144900183 T G PUF60 Silent p.A222A 0.08 TCGA-CN-4727-01 8 144994359 144994359 C G PLEC Silent p.L3347L 0.08 TCGA-CN-4727-01 8 145058522 145058522 C A PARP10 Silent p.V512V 0.24 TCGA-CN-4727-01 8 145738813 145738813 C A RECQL4 Missense_Mutation p.R751L 0.35 tolerated(0.09) benign(0.017) TCGA-CN-4727-01 8 30958449 30958449 C - WRN Frame_Shift_Del p.L690* 0.39 TCGA-CN-4727-01 8 48805818 48805818 T A PRKDC Missense_Mutation p.Y1243F 0.46 benign(0.007) TCGA-CN-4727-01 8 52733170 52733170 G C PCMTD1 Missense_Mutation p.A272G 0.10 tolerated(0.47) benign(0.001) TCGA-CN-4727-01 8 54669197 54669197 C A ATP6V1H Nonsense_Mutation p.E399* 0.14 TCGA-CN-4727-01 8 56015496 56015496 T C XKR4 Missense_Mutation p.F150L 0.18 tolerated(0.5) probably_damaging(0.982) TCGA-CN-4727-01 8 62212769 62212769 G C CLVS1 Missense_Mutation p.G128A 0.36 deleterious(0.03) probably_damaging(0.967) TCGA-CN-4727-01 8 69129909 69129909 C - PREX2 Frame_Shift_Del p.P1555Hfs*11 0.19 TCGA-CN-4727-01 8 93029586 93029586 T A RUNX1T1 Missense_Mutation p.T43S 0.12 tolerated_low_confidence(0.65) benign(0.014) TCGA-CN-4727-01 9 101608273 101608273 G A GALNT12 Silent p.T491T 0.23 TCGA-CN-4727-01 9 119158896 119158896 G A PAPPA 3'UTR 0.13 TCGA-CN-4727-01 9 122004402 122004402 C T BRINP1 Missense_Mutation p.A168T 0.13 tolerated(0.05) probably_damaging(0.989) TCGA-CN-4727-01 9 128070234 128070234 T A GAPVD1 Intron 0.50 TCGA-CN-4727-01 9 135947074 135947074 G T CEL Missense_Mutation p.G732C 0.14 deleterious_low_confidence(0.01) benign(0.192) TCGA-CN-4727-01 9 15695323 15695323 C A CCDC171 Missense_Mutation p.Q436K 0.55 deleterious(0.01) possibly_damaging(0.523) TCGA-CN-4727-01 9 74332976 74332976 C A TMEM2 Missense_Mutation p.A763S 0.52 tolerated(0.15) benign(0.003) TCGA-CN-4727-01 9 79325172 79325172 G T PRUNE2 Missense_Mutation p.S673Y 0.55 deleterious(0) probably_damaging(0.959) TCGA-CN-4727-01 9 84532842 84532842 C A SPATA31D5P RNA 0.54 TCGA-CN-4727-01 9 84564234 84564234 C A RP11-383M4.6 Intron 0.44 TCGA-CN-4727-01 9 84607717 84607717 G T SPATA31D1 Nonsense_Mutation p.E778* 0.15 TCGA-CN-4727-01 9 90317991 90317991 G T DAPK1 Silent p.L973L 0.19 TCGA-CN-4727-01 9 90535265 90535265 G A SPATA31C1 RNA 0.55 TCGA-CN-4727-01 9 91656972 91656972 C A SHC3 Missense_Mutation p.E443D 0.17 tolerated(0.18) benign(0.003) TCGA-CN-4727-01 9 95609023 95609023 A T ZNF484 Missense_Mutation p.H684Q 0.61 deleterious(0) probably_damaging(0.998) TCGA-CN-4727-01 X 105011320 105011320 G T IL1RAPL2 Missense_Mutation p.G576V 0.43 deleterious(0) possibly_damaging(0.852) TCGA-CN-4727-01 X 105855463 105855463 G A CXorf57 Silent p.E51E 0.53 TCGA-CN-4727-01 X 106844468 106844468 C T FRMPD3 Nonsense_Mutation p.R1100* 0.46 TCGA-CN-4727-01 X 118979179 118979180 - T UPF3B Frame_Shift_Ins p.V151Sfs*6 0.31 TCGA-CN-4727-01 X 123217393 123217393 G A STAG2 Missense_Mutation p.R1016K 0.43 tolerated(1) benign(0.004) TCGA-CN-4727-01 X 142717166 142717166 G T SLITRK4 Missense_Mutation p.P587T 0.43 tolerated(0.36) possibly_damaging(0.617) TCGA-CN-4727-01 X 144905021 144905021 C G SLITRK2 Missense_Mutation p.Q360E 0.56 deleterious(0.01) probably_damaging(0.995) TCGA-CN-4727-01 X 151092128 151092128 A G MAGEA4 5'UTR 0.52 TCGA-CN-4727-01 X 152225666 152225666 A G PNMA3 Missense_Mutation p.K85R 0.36 tolerated(0.39) benign(0.03) TCGA-CN-4727-01 X 155004162 155004162 C T SPRY3 Missense_Mutation p.P210L 0.30 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 X 155233355 155233355 G A IL9R Missense_Mutation p.G90S 0.27 tolerated(0.12) benign(0.259) TCGA-CN-4727-01 X 23019337 23019337 C T DDX53 Missense_Mutation p.P388L 0.46 deleterious(0) probably_damaging(0.983) TCGA-CN-4727-01 X 26157130 26157130 C A MAGEB18 Missense_Mutation p.R10S 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4727-01 X 29938141 29938141 G T IL1RAPL1 Missense_Mutation p.L329F 0.55 deleterious(0.01) probably_damaging(0.998) TCGA-CN-4727-01 X 30326412 30326412 G T NR0B1 Missense_Mutation p.Q357K 0.45 tolerated(0.09) benign(0.071) TCGA-CN-4727-01 X 51239212 51239212 G T NUDT11 Missense_Mutation p.R29S 0.62 tolerated(1) benign(0.003) TCGA-CN-4727-01 X 51488354 51488354 C A GSPT2 Missense_Mutation p.H544Q 0.50 deleterious(0) probably_damaging(1) TCGA-CN-4727-01 X 56296753 56296753 A T KLF8 Silent p.T299T 0.56 TCGA-CN-4727-01 X 83128538 83128538 G A CYLC1 Silent p.K274K 0.23 TCGA-CN-4727-01 X 83351277 83351277 C T RPS6KA6 Silent p.E632E 0.50 TCGA-CN-4728-01 10 124266371 124266371 G A HTRA1 Missense_Mutation p.M314I 0.18 tolerated(0.06) benign(0.209) TCGA-CN-4728-01 10 91476203 91476203 G C KIF20B Missense_Mutation p.W317C 0.10 deleterious(0) probably_damaging(0.998) TCGA-CN-4728-01 11 118921809 118921809 C T HYOU1 Missense_Mutation p.E535K 0.07 deleterious(0) probably_damaging(0.993) TCGA-CN-4728-01 11 124120818 124120818 C A OR8G1 Nonsense_Mutation p.Y132* 0.08 TCGA-CN-4728-01 11 14282159 14282159 A T RP11-21L19.1 3'Flank 0.10 TCGA-CN-4728-01 11 18159837 18159837 G T MRGPRX3 3'UTR 0.07 TCGA-CN-4728-01 11 43413095 43413096 - A TTC17 Frame_Shift_Ins p.Y168Ifs*2 0.18 TCGA-CN-4728-01 11 56185534 56185534 T A OR5R1 Missense_Mutation p.M59L 0.13 deleterious(0.02) benign(0.001) TCGA-CN-4728-01 11 57094220 57094220 G A SSRP1 Missense_Mutation p.S672F 0.04 deleterious(0) benign(0.184) TCGA-CN-4728-01 11 62416747 62416747 G C INTS5 Missense_Mutation p.Q269E 0.05 tolerated(0.11) benign(0.092) TCGA-CN-4728-01 11 65266792 65266792 C A MALAT1 RNA 0.25 TCGA-CN-4728-01 12 15776179 15776179 G T EPS8 Missense_Mutation p.F756L 0.12 deleterious(0) probably_damaging(0.986) TCGA-CN-4728-01 12 55863666 55863666 C T OR6C70 Missense_Mutation p.R86K 0.11 tolerated_low_confidence(0.35) benign(0.002) TCGA-CN-4728-01 12 56221277 56221277 C T DNAJC14 Missense_Mutation p.R389Q 0.03 tolerated(1) benign(0) TCGA-CN-4728-01 12 56814387 56814387 C T TIMELESS Missense_Mutation p.R1065H 0.06 tolerated(0.13) benign(0.052) TCGA-CN-4728-01 12 56814831 56814831 C T TIMELESS Missense_Mutation p.E986K 0.05 tolerated(0.52) benign(0.024) TCGA-CN-4728-01 12 56815188 56815188 C A TIMELESS Nonsense_Mutation p.E939* 0.05 TCGA-CN-4728-01 12 57992919 57992919 C T PIP4K2C Silent p.N195N 0.09 TCGA-CN-4728-01 12 7637727 7637727 G C CD163 Missense_Mutation p.A915G 0.07 deleterious(0.03) benign(0.068) TCGA-CN-4728-01 12 83251023 83251023 C A TMTC2 Silent p.S106S 0.10 TCGA-CN-4728-01 13 114307336 114307336 T C ATP4B Missense_Mutation p.Y136C 0.05 deleterious(0) probably_damaging(0.977) TCGA-CN-4728-01 13 50054403 50054403 C T SETDB2 Silent p.S318S 0.08 TCGA-CN-4728-01 13 95364121 95364135 GGCCTCGTCGATGAA - SOX21 In_Frame_Del p.F57_A61del 0.34 TCGA-CN-4728-01 14 50053085 50053085 G C RPS29 5'UTR 0.12 TCGA-CN-4728-01 14 77269772 77269772 G A ANGEL1 Silent p.I520I 0.05 TCGA-CN-4728-01 15 34163164 34163164 C T AVEN Missense_Mutation p.R195Q 0.09 deleterious(0) probably_damaging(1) TCGA-CN-4728-01 15 74427051 74427051 C T ISLR2 Silent p.L652L 0.07 TCGA-CN-4728-01 15 75815511 75815511 G C PTPN9 Missense_Mutation p.H125D 0.07 deleterious(0.02) benign(0.257) TCGA-CN-4728-01 15 86122930 86122930 A T AKAP13 Missense_Mutation p.D544V 0.11 tolerated_low_confidence(0.1) benign(0.107) TCGA-CN-4728-01 15 89836226 89836226 C G FANCI Missense_Mutation p.I741M 0.09 deleterious(0.01) possibly_damaging(0.799) TCGA-CN-4728-01 16 1478469 1478469 G A C16orf91 Missense_Mutation p.A61V 0.11 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-CN-4728-01 16 20352551 20352551 G A UMOD Missense_Mutation p.S480F 0.10 deleterious(0) probably_damaging(0.963) TCGA-CN-4728-01 16 30419501 30419501 A G ZNF771 Missense_Mutation p.M43V 0.10 tolerated(1) benign(0) TCGA-CN-4728-01 16 67234439 67234439 C T ELMO3 Missense_Mutation p.P220S 0.11 tolerated(0.94) benign(0.013) TCGA-CN-4728-01 16 67854801 67854801 G C TSNAXIP1 Missense_Mutation p.Q15H 0.08 deleterious(0) probably_damaging(0.957) TCGA-CN-4728-01 17 12812249 12812249 G C ARHGAP44 Silent p.L78L 0.06 TCGA-CN-4728-01 17 30321584 30321584 A G SUZ12 Missense_Mutation p.Y480C 0.08 tolerated(0.13) possibly_damaging(0.72) TCGA-CN-4728-01 17 57775074 57775074 G A PTRH2 Missense_Mutation p.A89V 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-4728-01 17 61511870 61511870 A - CYB561 Frame_Shift_Del p.Y217Tfs*3 0.14 TCGA-CN-4728-01 17 7150389 7150389 G C CTDNEP1 Missense_Mutation p.I94M 0.20 tolerated(0.3) possibly_damaging(0.781) TCGA-CN-4728-01 17 7579514 7579514 G - TP53 Frame_Shift_Del p.P58Qfs*65 0.27 TCGA-CN-4728-01 19 1043251 1043251 G A ABCA7 Splice_Site p.X264_splice 0.09 TCGA-CN-4728-01 19 14079491 14079491 G T RFX1 Missense_Mutation p.L540I 0.10 tolerated(0.13) benign(0.074) TCGA-CN-4728-01 19 16687957 16687957 C T MED26 Silent p.P228P 0.06 TCGA-CN-4728-01 19 39964120 39964120 G C SUPT5H Missense_Mutation p.Q817H 0.10 tolerated(0.72) benign(0.017) TCGA-CN-4728-01 19 42373230 42373230 G A RPS19 Missense_Mutation p.R101H 0.13 tolerated(0.07) benign(0.098) TCGA-CN-4728-01 19 42583864 42583864 G T ZNF574 Missense_Mutation p.C369F 0.07 deleterious(0) probably_damaging(0.951) TCGA-CN-4728-01 19 4345805 4345805 A T MPND Missense_Mutation p.T120S 0.09 deleterious(0) benign(0.041) TCGA-CN-4728-01 19 4357346 4357346 G A MPND Missense_Mutation p.A365T 0.15 tolerated(0.3) benign(0.053) TCGA-CN-4728-01 19 43699348 43699348 C T PSG4 Missense_Mutation p.E263K 0.08 tolerated(0.29) possibly_damaging(0.621) TCGA-CN-4728-01 19 45860923 45860923 T C ERCC2 Silent p.R424R 0.10 TCGA-CN-4728-01 19 47588318 47588318 T C ZC3H4 Missense_Mutation p.M368V 0.15 unknown(0) TCGA-CN-4728-01 19 49224087 49224087 G A RASIP1 Missense_Mutation p.R954C 0.05 deleterious(0) probably_damaging(0.99) TCGA-CN-4728-01 19 50549541 50549541 C G ZNF473 Missense_Mutation p.S614C 0.08 deleterious(0.01) benign(0.069) TCGA-CN-4728-01 19 52724304 52724305 - T PPP2R1A Frame_Shift_Ins p.A480Cfs*31 0.15 TCGA-CN-4728-01 19 58489924 58489924 G A ZNF606 Silent p.Y708Y 0.13 TCGA-CN-4728-01 19 58639690 58639690 G A ZNF329 Missense_Mutation p.S394F 0.10 deleterious(0) benign(0.084) TCGA-CN-4728-01 19 58849700 58849700 G C ZSCAN22 Missense_Mutation p.E162Q 0.08 tolerated(0.28) benign(0.268) TCGA-CN-4728-01 1 103355090 103355090 C G COL11A1 Missense_Mutation p.G1462A 0.08 unknown(0) TCGA-CN-4728-01 1 111216803 111216803 G A KCNA3 Missense_Mutation p.P210L 0.10 tolerated(0.09) benign(0.074) TCGA-CN-4728-01 1 151512818 151512818 G A TUFT1 5'UTR 0.19 TCGA-CN-4728-01 1 156640663 156640663 C A NES Missense_Mutation p.G1106V 0.15 tolerated(0.91) benign(0.003) TCGA-CN-4728-01 1 159176142 159176142 G A DARC Missense_Mutation p.A307T 0.15 deleterious(0.01) benign(0.351) TCGA-CN-4728-01 1 179064256 179064256 T C TOR3A Missense_Mutation p.I366T 0.08 deleterious(0) benign(0.269) TCGA-CN-4728-01 1 179310294 179310295 - T SOAT1 Frame_Shift_Ins p.S211* 0.08 TCGA-CN-4728-01 1 200529861 200529861 C A KIF14 Missense_Mutation p.A1407S 0.11 tolerated(0.31) benign(0.004) TCGA-CN-4728-01 1 228288853 228288854 - T C1orf35 Frame_Shift_Ins p.H257Qfs*2 0.09 TCGA-CN-4728-01 1 228487214 228487214 A C OBSCN Missense_Mutation p.T4489P 0.06 possibly_damaging(0.907) TCGA-CN-4728-01 1 247059207 247059207 T C AHCTF1 Missense_Mutation p.I557M 0.08 deleterious(0.04) possibly_damaging(0.452) TCGA-CN-4728-01 1 247655359 247655359 G T OR2W5 RNA 0.04 TCGA-CN-4728-01 1 248436962 248436962 C T OR2T33 Missense_Mutation p.R52Q 0.14 tolerated(0.39) benign(0.003) TCGA-CN-4728-01 1 248486986 248486986 C A OR2M7 Missense_Mutation p.K295N 0.10 tolerated(0.06) benign(0.077) TCGA-CN-4728-01 1 37949128 37949128 G C ZC3H12A Silent p.V572V 0.15 TCGA-CN-4728-01 1 45960699 45960699 C T CCDC163P 3'Flank 0.09 TCGA-CN-4728-01 1 47016763 47016763 C G KNCN Missense_Mutation p.G42A 0.07 deleterious_low_confidence(0.02) probably_damaging(0.959) TCGA-CN-4728-01 1 47351188 47351188 G T CYP4Z2P RNA 0.05 TCGA-CN-4728-01 1 47610609 47610609 G A CYP4A22 Missense_Mutation p.V397I 0.12 tolerated(1) benign(0.012) TCGA-CN-4728-01 1 65099811 65099811 G A CACHD1 Missense_Mutation p.E241K 0.09 deleterious(0.01) possibly_damaging(0.808) TCGA-CN-4728-01 1 66833700 66833700 T C PDE4B Silent p.V538V 0.13 TCGA-CN-4728-01 1 9129568 9129568 C - SLC2A5 Frame_Shift_Del p.E10Kfs*4 0.11 TCGA-CN-4728-01 20 10393770 10393770 G C MKKS Silent p.L131L 0.05 TCGA-CN-4728-01 20 10393844 10393844 G C MKKS Missense_Mutation p.Q107E 0.10 tolerated(0.1) benign(0.008) TCGA-CN-4728-01 20 10393971 10393971 G C MKKS Silent p.L64L 0.08 TCGA-CN-4728-01 20 42144745 42144745 G C L3MBTL1 Missense_Mutation p.E242Q 0.06 deleterious(0.05) possibly_damaging(0.462) TCGA-CN-4728-01 20 43030122 43030122 G A HNF4A Missense_Mutation p.G37D 0.09 tolerated(0.08) possibly_damaging(0.548) TCGA-CN-4728-01 20 43882277 43882277 C T SLPI Silent p.K61K 0.06 TCGA-CN-4728-01 20 55208539 55208540 - T TFAP2C Frame_Shift_Ins p.Y240Lfs*7 0.15 TCGA-CN-4728-01 22 30985250 30985250 C T PES1 Missense_Mutation p.R11Q 0.07 tolerated(0.12) probably_damaging(0.968) TCGA-CN-4728-01 2 100623856 100623856 C G AFF3 Missense_Mutation p.D106H 0.16 deleterious(0) probably_damaging(0.985) TCGA-CN-4728-01 2 167055509 167055509 G C SCN9A Missense_Mutation p.I1869M 0.14 deleterious(0) probably_damaging(0.988) TCGA-CN-4728-01 2 170042510 170042510 G T LRP2 Missense_Mutation p.D3116E 0.18 benign(0.031) TCGA-CN-4728-01 2 170403114 170403114 T A FASTKD1 Missense_Mutation p.I439F 0.10 deleterious(0) possibly_damaging(0.777) TCGA-CN-4728-01 2 190608094 190608094 C G ANKAR Missense_Mutation p.Q1302E 0.13 deleterious(0.02) possibly_damaging(0.625) TCGA-CN-4728-01 2 209138378 209138378 G T PIKFYVE Silent p.S81S 0.07 TCGA-CN-4728-01 2 219314035 219314035 C G VIL1 Silent p.L820L 0.12 TCGA-CN-4728-01 2 224809872 224809872 C T WDFY1 Missense_Mutation p.E44K 0.18 deleterious(0.01) benign(0.311) TCGA-CN-4728-01 2 25062774 25062774 T A ADCY3 Silent p.V441V 0.14 TCGA-CN-4728-01 2 27306220 27306220 G A EMILIN1 Missense_Mutation p.R594H 0.16 possibly_damaging(0.814) TCGA-CN-4728-01 2 98851190 98851190 C T VWA3B Silent p.L796L 0.08 TCGA-CN-4728-01 2 99012566 99012566 C T CNGA3 Silent p.L311L 0.08 TCGA-CN-4728-01 3 108147437 108147437 G A MYH15 Silent p.L1222L 0.07 TCGA-CN-4728-01 3 111981806 111981806 C T SLC9C1 Missense_Mutation p.D388N 0.09 tolerated(0.24) benign(0.2) TCGA-CN-4728-01 3 124114033 124114033 G T KALRN Missense_Mutation p.A670S 0.07 tolerated(0.24) unknown(0) TCGA-CN-4728-01 3 129251462 129251462 C G RHO Missense_Mutation p.F261L 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-CN-4728-01 3 14562009 14562009 C T GRIP2 RNA 0.09 TCGA-CN-4728-01 3 151164902 151164902 G T IGSF10 Missense_Mutation p.T956K 0.30 tolerated(0.1) benign(0.167) TCGA-CN-4728-01 3 151164903 151164903 T C IGSF10 Missense_Mutation p.T956A 0.30 tolerated(0.22) benign(0.086) TCGA-CN-4728-01 3 160099510 160099510 G A IFT80 Nonsense_Mutation p.Q14* 0.09 TCGA-CN-4728-01 3 167437947 167437947 C G PDCD10 5'UTR 0.08 TCGA-CN-4728-01 3 167742808 167742808 G A GOLIM4 Nonsense_Mutation p.Q567* 0.10 TCGA-CN-4728-01 3 184023708 184023708 C G PSMD2 Silent p.L564L 0.04 TCGA-CN-4728-01 3 186006525 186006525 G A DGKG Missense_Mutation p.T173M 0.07 tolerated(0.11) benign(0.026) TCGA-CN-4728-01 3 196281368 196281368 T C WDR53 Missense_Mutation p.K264R 0.08 tolerated(0.21) benign(0.094) TCGA-CN-4728-01 3 24174936 24174936 T G THRB Missense_Mutation p.Q252H 0.06 deleterious(0.04) benign(0.003) TCGA-CN-4728-01 3 44437946 44437946 C T TCAIM Silent p.S250S 0.06 TCGA-CN-4728-01 3 44635868 44635868 G A ZNF660 Silent p.Q61Q 0.08 TCGA-CN-4728-01 3 48336722 48336722 C T NME6 Silent p.G87G 0.07 TCGA-CN-4728-01 3 52537039 52537039 G T STAB1 Missense_Mutation p.R203L 0.14 tolerated(0.29) benign(0.032) TCGA-CN-4728-01 3 52643617 52643617 C T PBRM1 Missense_Mutation p.R760H 0.13 deleterious(0) benign(0.391) TCGA-CN-4728-01 4 100003182 100003182 T C ADH5 Missense_Mutation p.H67R 0.15 deleterious(0) possibly_damaging(0.87) TCGA-CN-4728-01 4 148539207 148539207 G A TMEM184C Missense_Mutation p.V34M 0.05 deleterious(0) benign(0.394) TCGA-CN-4728-01 4 170628124 170628124 G T CLCN3 Missense_Mutation p.W619L 0.05 deleterious(0) probably_damaging(0.986) TCGA-CN-4728-01 4 177249416 177249416 G T SPCS3 Missense_Mutation p.V160L 0.12 tolerated(0.09) benign(0.033) TCGA-CN-4728-01 4 1816137 1816137 C A LETM1 3'UTR 0.17 TCGA-CN-4728-01 4 78783997 78783997 C G MRPL1 5'UTR 0.09 TCGA-CN-4728-01 4 85538789 85538789 C T CDS1 Silent p.L139L 0.06 TCGA-CN-4728-01 4 87735733 87735733 A T PTPN13 3'UTR 0.28 TCGA-CN-4728-01 5 158223429 158223429 G A EBF1 Missense_Mutation p.A278V 0.08 deleterious(0) possibly_damaging(0.669) TCGA-CN-4728-01 5 180048861 180048861 C A FLT4 Missense_Mutation p.E567D 0.10 tolerated(0.22) benign(0.019) TCGA-CN-4728-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.10 tolerated(0.25) benign(0.064) TCGA-CN-4728-01 5 63257049 63257049 G A HTR1A Silent p.L166L 0.07 TCGA-CN-4728-01 6 116949382 116949382 G C RSPH4A Missense_Mutation p.Q504H 0.08 tolerated(0.1) benign(0.186) TCGA-CN-4728-01 6 148865488 148865488 A G SASH1 Missense_Mutation p.H961R 0.05 tolerated_low_confidence(0.31) benign(0.021) TCGA-CN-4728-01 6 152469388 152469388 A G SYNE1 Silent p.N8256N 0.07 TCGA-CN-4728-01 6 165715310 165715310 G A C6orf118 Silent p.G167G 0.05 TCGA-CN-4728-01 6 49753563 49753563 A C PGK2 3'UTR 0.16 TCGA-CN-4728-01 6 56504792 56504792 G T DST Missense_Mutation p.H315N 0.05 probably_damaging(0.999) TCGA-CN-4728-01 6 56505116 56505116 G C DST Nonsense_Mutation p.S235* 0.06 TCGA-CN-4728-01 6 56505121 56505121 G T DST Missense_Mutation p.F233L 0.08 benign(0.135) TCGA-CN-4728-01 6 56505218 56505218 G A DST Missense_Mutation p.T201I 0.07 possibly_damaging(0.848) TCGA-CN-4728-01 7 138602370 138602370 C T KIAA1549 Missense_Mutation p.E668K 0.11 tolerated(0.14) benign(0.293) TCGA-CN-4728-01 7 157160131 157160131 C T DNAJB6 Silent p.F100F 0.07 TCGA-CN-4728-01 7 34097738 34097738 G A BMPER Missense_Mutation p.R332H 0.08 tolerated(0.55) benign(0.004) TCGA-CN-4728-01 7 64453119 64453119 C A ERV3-1 Missense_Mutation p.V96F 0.09 tolerated(0.52) benign(0.006) TCGA-CN-4728-01 7 6449640 6449640 T C DAGLB Missense_Mutation p.Y616C 0.06 deleterious(0) probably_damaging(0.999) TCGA-CN-4728-01 7 883166 883166 C G SUN1 Intron 0.07 TCGA-CN-4728-01 8 125076788 125076788 G T FER1L6 Nonsense_Mutation p.E1177* 0.06 TCGA-CN-4728-01 8 125498931 125498931 G A RNF139 Silent p.E347E 0.12 TCGA-CN-4728-01 8 131880122 131880122 G A ADCY8 Missense_Mutation p.T727M 0.13 tolerated(1) benign(0.163) TCGA-CN-4728-01 8 139380208 139380208 T G FAM135B Missense_Mutation p.T7P 0.08 deleterious(0) probably_damaging(0.999) TCGA-CN-4728-01 8 38006273 38006273 C A STAR Splice_Site p.X22_splice 0.05 TCGA-CN-4728-01 8 48748940 48748950 GCCCTTATCTG CCCCTTCTCCC PRKDC Missense_Mutation p.QIRA2633GRRG 0.11 TCGA-CN-4728-01 8 59409510 59409510 G A CYP7A1 Silent p.I187I 0.11 TCGA-CN-4728-01 8 69021852 69021852 T G PREX2 Missense_Mutation p.I1047R 0.26 deleterious(0) probably_damaging(0.957) TCGA-CN-4728-01 9 138714638 138714638 G A CAMSAP1 Silent p.I623I 0.07 TCGA-CN-4728-01 9 33675711 33675711 C G PTENP1 RNA 0.23 TCGA-CN-4728-01 9 91605992 91605992 C G C9orf47 Missense_Mutation p.R28G 0.12 deleterious_low_confidence(0) benign(0.433) TCGA-CN-4728-01 9 98209663 98209663 G A PTCH1 Missense_Mutation p.S1292F 0.07 tolerated_low_confidence(0.67) benign(0.087) TCGA-CN-4728-01 X 102348012 102348012 T G NXF3 5'UTR 0.20 TCGA-CN-4728-01 X 106171760 106171760 G C CLDN2 Missense_Mutation p.G101A 0.13 deleterious(0) probably_damaging(1) TCGA-CN-4728-01 X 118604391 118604391 G A SLC25A5 Silent p.Q218Q 0.17 TCGA-CN-4728-01 X 147743550 147743550 C A AFF2 Missense_Mutation p.S101Y 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-CN-4728-01 X 78217001 78217001 C T P2RY10 Silent p.L328L 0.13 TCGA-CN-4729-01 10 114190463 114190463 C A ZDHHC6 3'UTR 0.27 TCGA-CN-4729-01 10 27324102 27324102 C T ANKRD26 Missense_Mutation p.G1093S 0.07 tolerated(0.16) benign(0.034) TCGA-CN-4729-01 10 29776096 29776096 G A SVIL Missense_Mutation p.A1494V 0.17 deleterious(0) probably_damaging(0.967) TCGA-CN-4729-01 10 45498699 45498699 C G ZNF22 Intron 0.12 TCGA-CN-4729-01 10 61413786 61413788 CTT - SLC16A9 In_Frame_Del p.R332del 0.12 TCGA-CN-4729-01 10 88696664 88696664 G A MMRN2 Missense_Mutation p.P896S 0.10 tolerated(0.41) benign(0.158) TCGA-CN-4729-01 10 95326706 95326706 C A FFAR4 Missense_Mutation p.L77M 0.07 deleterious(0) probably_damaging(0.992) TCGA-CN-4729-01 10 96087851 96087851 G A PLCE1 3'UTR 0.33 TCGA-CN-4729-01 11 113194069 113194069 G A TTC12 Missense_Mutation p.E40K 0.12 tolerated(0.29) benign(0.011) TCGA-CN-4729-01 11 114392969 114392969 G A NXPE1 Silent p.I313I 0.10 TCGA-CN-4729-01 11 125301235 125301235 C T PKNOX2 Nonsense_Mutation p.Q456* 0.09 TCGA-CN-4729-01 11 126137475 126137475 C G SRPR Missense_Mutation p.D112H 0.08 tolerated(0.07) possibly_damaging(0.794) TCGA-CN-4729-01 11 126284021 126284021 G A ST3GAL4 3'UTR 0.53 TCGA-CN-4729-01 11 14990471 14990471 G A CALCA Silent p.F100F 0.16 TCGA-CN-4729-01 11 33079527 33079527 G - TCP11L1 Frame_Shift_Del p.D161Ifs*4 0.16 TCGA-CN-4729-01 11 4409647 4409647 C T TRIM21 Silent p.E206E 0.30 TCGA-CN-4729-01 11 57261527 57261527 G A SLC43A1 Silent p.D270D 0.09 TCGA-CN-4729-01 11 58379154 58379154 A T ZFP91 Missense_Mutation p.E267V 0.12 tolerated(0.23) benign(0.343) TCGA-CN-4729-01 11 64893285 64893285 C A MRPL49 Silent p.R148R 0.20 TCGA-CN-4729-01 11 78443447 78443447 G A TENM4 Missense_Mutation p.R1018C 0.29 deleterious(0) probably_damaging(0.988) TCGA-CN-4729-01 11 85468777 85468777 G A SYTL2 5'UTR 0.12 TCGA-CN-4729-01 11 92523277 92523277 G C FAT3 Missense_Mutation p.D1502H 0.11 probably_damaging(0.996) TCGA-CN-4729-01 11 92534060 92534060 C T FAT3 Silent p.P2627P 0.29 TCGA-CN-4729-01 11 99690441 99690441 G A CNTN5 Silent p.Q74Q 0.09 TCGA-CN-4729-01 12 247993 247993 C T IQSEC3 Silent p.V488V 0.19 TCGA-CN-4729-01 12 2659197 2659197 G T CACNA1C Silent p.L493L 0.48 TCGA-CN-4729-01 12 32729207 32729207 A G FGD4 5'UTR 0.17 TCGA-CN-4729-01 12 48457609 48457609 T A SENP1 Missense_Mutation p.I431L 0.29 deleterious(0) probably_damaging(0.995) TCGA-CN-4729-01 12 57640593 57640593 C G STAC3 Missense_Mutation p.K199N 0.06 tolerated(0.26) probably_damaging(0.942) TCGA-CN-4729-01 12 66696407 66696407 G T HELB Silent p.L8L 0.16 TCGA-CN-4729-01 12 66696408 66696408 C T HELB Missense_Mutation p.R9C 0.17 deleterious_low_confidence(0) unknown(0) TCGA-CN-4729-01 12 977906 977906 C G WNK1 Intron 0.05 TCGA-CN-4729-01 13 36129126 36129126 G A NBEA Missense_Mutation p.R2270K 0.12 tolerated(0.2) benign(0.406) TCGA-CN-4729-01 13 52439668 52439668 C T CCDC70 Missense_Mutation p.R52C 0.12 deleterious(0) probably_damaging(0.958) TCGA-CN-4729-01 13 52660423 52660423 C G NEK5 Missense_Mutation p.R490T 0.07 tolerated(0.57) benign(0.055) TCGA-CN-4729-01 13 58207106 58207106 G A PCDH17 Silent p.S142S 0.50 TCGA-CN-4729-01 14 23826643 23826643 C T EFS Missense_Mutation p.R493Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-CN-4729-01 14 33147632 33147632 A T AKAP6 Missense_Mutation p.D949V 0.25 deleterious(0.02) possibly_damaging(0.83) TCGA-CN-4729-01 14 52194513 52194513 C T FRMD6 Silent p.L545L 0.06 TCGA-CN-4729-01 14 67826442 67826442 C T ATP6V1D 5'UTR 0.18 TCGA-CN-4729-01 15 20663101 20663101 G A HERC2P3 RNA 0.21 TCGA-CN-4729-01 15 65114583 65114583 C T PIF1 Silent p.G233G 0.34 TCGA-CN-4729-01 15 70960340 70960340 G C UACA Missense_Mutation p.Q895E 0.25 tolerated(0.42) benign(0.06) TCGA-CN-4729-01 15 79231500 79231500 G A CTSH Silent p.F35F 0.12 TCGA-CN-4729-01 15 81224351 81224351 G A KIAA1199 Missense_Mutation p.V922M 0.19 deleterious(0.02) benign(0.298) TCGA-CN-4729-01 15 90229778 90229778 C G PEX11A Splice_Site p.X19_splice 0.08 TCGA-CN-4729-01 16 28856350 28856350 G A TUFM Silent p.L147L 0.17 TCGA-CN-4729-01 16 57088721 57088721 C T NLRC5 Silent p.L1189L 0.25 TCGA-CN-4729-01 16 58030907 58030907 G A ZNF319 Silent p.P421P 0.10 TCGA-CN-4729-01 16 71710374 71710374 G A PHLPP2 Missense_Mutation p.R483W 0.12 deleterious(0) probably_damaging(0.975) TCGA-CN-4729-01 17 12655943 12655943 C G MYOCD Missense_Mutation p.F446L 0.08 tolerated(0.16) benign(0.019) TCGA-CN-4729-01 17 16347302 16347302 G T FAM211A Missense_Mutation p.T212K 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-CN-4729-01 17 2203496 2203496 C T SMG6 Missense_Mutation p.G184E 0.18 tolerated_low_confidence(0.14) benign(0.001) TCGA-CN-4729-01 17 3030782 3030782 C T OR1G1 Missense_Mutation p.E22K 0.09 tolerated(0.06) benign(0.055) TCGA-CN-4729-01 17 39305733 39305733 C A KRTAP4-5 Missense_Mutation p.C96F 0.27 unknown(0) TCGA-CN-4729-01 17 42335957 42335957 C G SLC4A1 Missense_Mutation p.R304P 0.16 deleterious(0.01) benign(0.064) TCGA-CN-4729-01 17 48166566 48166566 G A ITGA3 Silent p.G1046G 0.20 TCGA-CN-4729-01 17 7559331 7559331 C G ATP1B2 3'UTR 0.30 TCGA-CN-4729-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.28 deleterious(0) probably_damaging(1) TCGA-CN-4729-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.24 deleterious(0) probably_damaging(0.997) TCGA-CN-4729-01 17 7604804 7604804 G T WRAP53 Silent p.P253P 0.24 TCGA-CN-4729-01 17 78321813 78321813 C T RNF213 Silent p.C3226C 0.13 TCGA-CN-4729-01 17 8049769 8049769 G A PER1 Silent p.S653S 0.24 TCGA-CN-4729-01 18 18534783 18534783 G T ROCK1 Missense_Mutation p.H1272N 0.06 deleterious(0) probably_damaging(0.992) TCGA-CN-4729-01 18 66541993 66541993 G A CCDC102B Missense_Mutation p.D342N 0.10 tolerated(0.19) benign(0.377) TCGA-CN-4729-01 18 66564499 66564499 G T CCDC102B Missense_Mutation p.R366M 0.18 deleterious(0) probably_damaging(0.992) TCGA-CN-4729-01 19 18546863 18546863 G T ISYNA1 Missense_Mutation p.F318L 0.24 deleterious(0) probably_damaging(0.992) TCGA-CN-4729-01 19 21476477 21476477 T C ZNF708 Missense_Mutation p.I431V 0.21 tolerated(0.54) benign(0.002) TCGA-CN-4729-01 19 36207617 36207617 C T ZBTB32 Missense_Mutation p.S476L 0.11 deleterious_low_confidence(0) unknown(0) TCGA-CN-4729-01 19 36883703 36883703 C T ZFP82 Silent p.K513K 0.19 TCGA-CN-4729-01 19 37853704 37853704 G A HKR1 Missense_Mutation p.R336Q 0.10 tolerated(0.14) benign(0.272) TCGA-CN-4729-01 19 40357679 40357679 C G FCGBP Missense_Mutation p.G5212R 0.20 probably_damaging(0.985) TCGA-CN-4729-01 19 46185005 46185005 C G GIPR Missense_Mutation p.R405G 0.39 deleterious(0.01) benign(0.341) TCGA-CN-4729-01 19 57724189 57724189 C A ZNF264 Missense_Mutation p.P575H 0.19 deleterious(0) possibly_damaging(0.873) TCGA-CN-4729-01 19 57889289 57889289 G C ZNF547 Missense_Mutation p.Q315H 0.10 deleterious(0.04) probably_damaging(0.965) TCGA-CN-4729-01 19 58772562 58772562 A G ZNF544 Missense_Mutation p.N197S 0.15 tolerated(0.12) benign(0.209) TCGA-CN-4729-01 1 12835290 12835290 C T PRAMEF12 Missense_Mutation p.R94C 0.27 tolerated(0.09) possibly_damaging(0.453) TCGA-CN-4729-01 1 145581474 145581474 C G PIAS3 Missense_Mutation p.A352G 0.13 deleterious(0) possibly_damaging(0.829) TCGA-CN-4729-01 1 150784502 150784502 C T ARNT Missense_Mutation p.E789K 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CN-4729-01 1 160394043 160394043 A T VANGL2 Missense_Mutation p.E425D 0.28 deleterious(0.03) benign(0.138) TCGA-CN-4729-01 1 17603133 17603133 G T PADI3 Missense_Mutation p.S476I 0.08 deleterious(0) possibly_damaging(0.698) TCGA-CN-4729-01 1 190068182 190068182 T A BRINP3 Missense_Mutation p.T423S 0.21 tolerated(1) benign(0.038) TCGA-CN-4729-01 1 197074167 197074167 C T ASPM Missense_Mutation p.R1405H 0.17 deleterious(0.01) possibly_damaging(0.737) TCGA-CN-4729-01 1 208084367 208084367 A G CD34 Missense_Mutation p.L20P 0.27 deleterious(0) probably_damaging(0.993) TCGA-CN-4729-01 1 212560368 212560368 G A TMEM206 Missense_Mutation p.L131F 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-4729-01 1 21928278 21928278 C T RAP1GAP Silent p.P581P 0.38 TCGA-CN-4729-01 1 247608112 247608112 G C NLRP3 Silent p.L1000L 0.13 TCGA-CN-4729-01 1 247836069 247836069 G C OR13G1 Missense_Mutation p.A92G 0.09 tolerated(1) benign(0) TCGA-CN-4729-01 1 249142664 249142664 C T ZNF672 Silent p.C397C 0.16 TCGA-CN-4729-01 1 29475408 29475408 C T SRSF4 Silent p.R333R 0.06 TCGA-CN-4729-01 1 40944980 40944980 G C ZFP69 5'UTR 0.35 TCGA-CN-4729-01 1 4832510 4832510 C T AJAP1 Missense_Mutation p.A363V 0.10 deleterious(0.01) benign(0.193) TCGA-CN-4729-01 1 51822456 51822456 C G EPS15 Missense_Mutation p.Q869H 0.26 deleterious(0) possibly_damaging(0.785) TCGA-CN-4729-01 1 53222179 53222179 C T ZYG11B Missense_Mutation p.T27I 0.10 tolerated(0.88) benign(0.024) TCGA-CN-4729-01 1 86852648 86852648 T C ODF2L Missense_Mutation p.I21M 0.13 tolerated(0.13) benign(0.21) TCGA-CN-4729-01 20 29956428 29956428 C T DEFB118 5'UTR 0.09 TCGA-CN-4729-01 20 398254 398254 C G RBCK1 Silent p.L84L 0.05 TCGA-CN-4729-01 21 30339459 30339459 G T LTN1 Missense_Mutation p.Q498K 0.19 tolerated(0.12) benign(0.41) TCGA-CN-4729-01 21 34123488 34123488 C A PAXBP1 Missense_Mutation p.D517Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-CN-4729-01 21 43221744 43221745 - A PRDM15 Frame_Shift_Ins p.T1394Yfs*4 0.30 TCGA-CN-4729-01 22 20127356 20127356 C T ZDHHC8 Silent p.F166F 0.11 TCGA-CN-4729-01 22 24135759 24135759 G T SMARCB1 Silent p.T82T 0.22 TCGA-CN-4729-01 22 27024279 27024279 T A CRYBA4 Missense_Mutation p.F110I 0.04 deleterious(0) benign(0.394) TCGA-CN-4729-01 22 37770534 37770534 C T ELFN2 Silent p.T347T 0.26 TCGA-CN-4729-01 22 41623203 41623203 C T L3MBTL2 Silent p.L566L 0.10 TCGA-CN-4729-01 2 106497993 106497993 G A NCK2 Missense_Mutation p.D146N 0.29 deleterious(0) probably_damaging(0.999) TCGA-CN-4729-01 2 109085540 109085540 G C GCC2 Missense_Mutation p.E107D 0.16 deleterious(0.01) benign(0.069) TCGA-CN-4729-01 2 113737637 113737637 G C IL36G Missense_Mutation p.R71T 0.11 deleterious(0) possibly_damaging(0.614) TCGA-CN-4729-01 2 125284919 125284921 GCT - CNTNAP5 In_Frame_Del p.C512del 0.09 TCGA-CN-4729-01 2 127821184 127821184 G A BIN1 Missense_Mutation p.A246V 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-CN-4729-01 2 128631411 128631411 T C AMMECR1L Missense_Mutation p.N133S 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-CN-4729-01 2 141533692 141533692 T C LRP1B Silent p.K1825K 0.28 TCGA-CN-4729-01 2 171573747 171573747 C T SP5 Nonsense_Mutation p.Q344* 0.21 TCGA-CN-4729-01 2 179411014 179411014 C G TTN Missense_Mutation p.D31682H 0.21 TCGA-CN-4729-01 2 179442069 179442069 G A TTN Missense_Mutation p.S22998L 0.06 TCGA-CN-4729-01 2 179600777 179600778 GA - TTN Frame_Shift_Del p.S4799Qfs*3 0.20 TCGA-CN-4729-01 2 200213543 200213544 - T SATB2 Frame_Shift_Ins p.E352Rfs*20 0.24 TCGA-CN-4729-01 2 212589879 212589879 G A ERBB4 Silent p.C221C 0.21 TCGA-CN-4729-01 2 225266461 225266461 C T FAM124B Missense_Mutation p.A9T 0.22 tolerated(0.26) possibly_damaging(0.901) TCGA-CN-4729-01 2 228153932 228153932 T A COL4A3 Missense_Mutation p.L983H 0.07 unknown(0) TCGA-CN-4729-01 2 228153933 228153933 C G COL4A3 Silent p.L983L 0.07 TCGA-CN-4729-01 2 242277151 242277151 C T SEPT2 Silent p.V180V 0.16 TCGA-CN-4729-01 2 25468890 25468890 C G DNMT3A Missense_Mutation p.E491D 0.11 deleterious(0.01) benign(0.004) TCGA-CN-4729-01 2 29249763 29249763 C G FAM179A Nonsense_Mutation p.S633* 0.33 TCGA-CN-4729-01 2 72361996 72361996 C T CYP26B1 Missense_Mutation p.R252Q 0.21 tolerated(0.45) benign(0.009) TCGA-CN-4729-01 2 96690176 96690176 G A GPAT2 Silent p.G556G 0.12 TCGA-CN-4729-01 2 99900715 99900715 C T LYG1 3'Flank 0.26 TCGA-CN-4729-01 3 124515329 124515329 G A ITGB5 Silent p.C533C 0.21 TCGA-CN-4729-01 3 127788625 127788625 C G SEC61A1 3'UTR 0.22 TCGA-CN-4729-01 3 129020915 129020915 C G HMCES Missense_Mutation p.S253C 0.06 deleterious(0) probably_damaging(0.999) TCGA-CN-4729-01 3 140406816 140406816 A T TRIM42 Missense_Mutation p.K431M 0.08 deleterious(0) probably_damaging(0.99) TCGA-CN-4729-01 3 141012126 141012126 C T ACPL2 3'UTR 0.25 TCGA-CN-4729-01 3 147108849 147108849 C T ZIC4 Silent p.S341S 0.19 TCGA-CN-4729-01 3 151105633 151105633 G A MED12L Silent p.P1673P 0.11 TCGA-CN-4729-01 3 169663737 169663737 C A RP11-379K17.4 RNA 0.21 TCGA-CN-4729-01 3 176743208 176743208 T C TBL1XR1 3'UTR 0.32 TCGA-CN-4729-01 3 184018206 184018206 G C PSMD2 Missense_Mutation p.E111Q 0.09 deleterious(0.01) benign(0.014) TCGA-CN-4729-01 3 190362143 190362143 C T IL1RAP Silent p.V386V 0.17 TCGA-CN-4729-01 3 196198801 196198801 C T RNF168 Silent p.K535K 0.02 TCGA-CN-4729-01 3 39227663 39227663 C A XIRP1 Missense_Mutation p.G1092C 0.13 tolerated(0.1) probably_damaging(0.925) TCGA-CN-4729-01 3 97806283 97806283 C T OR5AC2 Silent p.D89D 0.14 TCGA-CN-4729-01 4 103949913 103949913 G A SLC9B2 Silent p.A461A 0.12 TCGA-CN-4729-01 4 103949935 103949935 G C SLC9B2 Missense_Mutation p.S454C 0.10 tolerated(0.11) benign(0.25) TCGA-CN-4729-01 4 126336921 126336921 T C FAT4 Missense_Mutation p.V2268A 0.12 benign(0.211) TCGA-CN-4729-01 4 158284089 158284089 G T GRIA2 Missense_Mutation p.A849S 0.18 tolerated(1) benign(0.005) TCGA-CN-4729-01 4 26422343 26422343 T C RBPJ Silent p.A177A 0.58 TCGA-CN-4729-01 4 40123657 40123657 T C N4BP2 Missense_Mutation p.L1309P 0.08 tolerated(0.2) possibly_damaging(0.577) TCGA-CN-4729-01 4 57182127 57182127 C T KIAA1211 Missense_Mutation p.S820L 0.15 tolerated(1) possibly_damaging(0.519) TCGA-CN-4729-01 4 73963824 73963824 C G ANKRD17 Missense_Mutation p.E1663Q 0.08 benign(0.004) TCGA-CN-4729-01 5 10414543 10414543 A T MARCH6 Splice_Site p.X633_splice 0.36 TCGA-CN-4729-01 5 140308890 140308890 C A PCDHAC1 Missense_Mutation p.H805N 0.13 tolerated(0.24) benign(0.005) TCGA-CN-4729-01 5 140731666 140731666 C A PCDHGB1 Missense_Mutation p.F613L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4729-01 5 160973412 160973412 C A GABRB2 Missense_Mutation p.D29Y 0.22 deleterious(0.01) benign(0.062) TCGA-CN-4729-01 5 169031117 169031117 C G SPDL1 Nonsense_Mutation p.S575* 0.27 TCGA-CN-4729-01 5 52347333 52347333 G A ITGA2 Silent p.Q241Q 0.34 TCGA-CN-4729-01 5 67591278 67591278 G C PIK3R1 Missense_Mutation p.K592N 0.08 tolerated(0.1) benign(0.433) TCGA-CN-4729-01 5 67591279 67591279 A T PIK3R1 Nonsense_Mutation p.K593* 0.08 TCGA-CN-4729-01 5 9108255 9108255 A G SEMA5A Silent p.N690N 0.19 TCGA-CN-4729-01 6 165693469 165693469 T G C6orf118 3'UTR 0.17 TCGA-CN-4729-01 6 18207751 18207751 C T KDM1B Silent p.L362L 0.28 TCGA-CN-4729-01 6 31931233 31931233 C T SKIV2L Missense_Mutation p.R483C 0.18 deleterious(0) possibly_damaging(0.906) TCGA-CN-4729-01 6 33245570 33245570 G T B3GALT4 Missense_Mutation p.G125V 0.17 tolerated(0.28) benign(0.198) TCGA-CN-4729-01 6 43155036 43155036 C T CUL9 Silent p.Y480Y 0.15 TCGA-CN-4729-01 6 43155037 43155037 C T CUL9 Missense_Mutation p.L481F 0.16 deleterious(0) probably_damaging(0.996) TCGA-CN-4729-01 6 76412714 76412714 C - SENP6 Frame_Shift_Del p.Q882Rfs*18 0.16 TCGA-CN-4729-01 6 90572083 90572083 G A CASP8AP2 RNA 0.12 TCGA-CN-4729-01 6 90605064 90605064 C G GJA10 Missense_Mutation p.R293G 0.12 tolerated(0.37) benign(0.004) TCGA-CN-4729-01 7 143956646 143956646 G A OR2A7 Missense_Mutation p.L26F 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-CN-4729-01 7 150553769 150553780 CTCATCGAGATG - AOC1 In_Frame_Del p.I72_L75del 0.12 TCGA-CN-4729-01 7 2415133 2415133 G A EIF3B Missense_Mutation p.V667I 0.22 tolerated(0.12) benign(0.032) TCGA-CN-4729-01 7 31008504 31008504 A G GHRHR Missense_Mutation p.E38G 0.16 deleterious(0) probably_damaging(0.928) TCGA-CN-4729-01 7 5963507 5963507 A T CCZ1 Missense_Mutation p.D436V 0.16 deleterious(0) probably_damaging(0.999) TCGA-CN-4729-01 7 78130931 78130931 T A MAGI2 Missense_Mutation p.M310L 0.11 deleterious(0) probably_damaging(0.974) TCGA-CN-4729-01 7 92733477 92733477 T A SAMD9 Missense_Mutation p.E645V 0.10 tolerated(0.08) benign(0.345) TCGA-CN-4729-01 7 98248963 98248963 C G NPTX2 Silent p.L145L 0.29 TCGA-CN-4729-01 8 130789715 130789715 C T GSDMC Missense_Mutation p.R40Q 0.15 tolerated(0.71) benign(0.266) TCGA-CN-4729-01 8 139180196 139180196 G T FAM135B Silent p.G400G 0.28 TCGA-CN-4729-01 8 16956031 16956031 C T MICU3 Missense_Mutation p.T318I 0.27 tolerated(0.09) possibly_damaging(0.476) TCGA-CN-4729-01 8 22172591 22172591 C - PIWIL2 Frame_Shift_Del p.Q715Rfs*22 0.23 TCGA-CN-4729-01 8 35608198 35608198 C A UNC5D Silent p.L678L 0.13 TCGA-CN-4729-01 8 48309175 48309175 G C SPIDR Missense_Mutation p.K255N 0.33 deleterious(0) possibly_damaging(0.906) TCGA-CN-4729-01 8 56015448 56015448 G A XKR4 Missense_Mutation p.V134M 0.05 deleterious(0.01) probably_damaging(0.934) TCGA-CN-4729-01 8 56015674 56015674 C A XKR4 Missense_Mutation p.P209H 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-CN-4729-01 9 111745497 111745497 C T CTNNAL1 Silent p.V276V 0.10 TCGA-CN-4729-01 9 139402755 139402755 C T NOTCH1 Missense_Mutation p.C1085Y 0.34 deleterious(0.01) benign(0.33) TCGA-CN-4729-01 9 87339210 87339210 C G NTRK2 Missense_Mutation p.I264M 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-CN-4729-01 X 155231079 155231080 - T IL9R Intron 0.28 TCGA-CN-4729-01 X 18234753 18234753 T A BEND2 Silent p.I42I 0.45 TCGA-CN-4729-01 X 32482777 32482777 C T DMD Missense_Mutation p.D1068N 0.13 probably_damaging(0.968) TCGA-CN-4729-01 X 48888088 48888088 G A TFE3 Missense_Mutation p.H437Y 0.24 deleterious(0) benign(0.415) TCGA-CN-4729-01 X 55479471 55479471 G A MAGEH1 3'UTR 0.30 TCGA-CN-4729-01 X 63405905 63405905 G C AMER1 3'UTR 0.14 TCGA-CN-4729-01 X 83723928 83723928 A G HDX Missense_Mutation p.L268S 0.41 deleterious(0) probably_damaging(0.999) TCGA-CN-4730-01 10 105974155 105974155 T G WDR96 Missense_Mutation p.K149T 0.44 deleterious(0.04) benign(0.139) TCGA-CN-4730-01 10 107022174 107022174 G A SORCS3 Missense_Mutation p.A1177T 0.44 tolerated(1) benign(0.013) TCGA-CN-4730-01 10 131640456 131640456 C T EBF3 Silent p.T423T 0.36 TCGA-CN-4730-01 10 134004265 134004265 G A DPYSL4 Silent p.L18L 0.16 TCGA-CN-4730-01 10 15559213 15559213 G A ITGA8 Nonsense_Mutation p.Q1046* 0.14 TCGA-CN-4730-01 10 29762869 29762869 C G SVIL Missense_Mutation p.E1809D 0.22 deleterious(0) possibly_damaging(0.598) TCGA-CN-4730-01 10 30749693 30749693 C T MAP3K8 Silent p.L444L 0.39 TCGA-CN-4730-01 11 118949887 118949887 G A VPS11 Missense_Mutation p.R771K 0.20 tolerated(1) benign(0.001) TCGA-CN-4730-01 11 47593175 47593175 G C PTPMT1 Missense_Mutation p.K200N 0.14 tolerated_low_confidence(0.09) benign(0.004) TCGA-CN-4730-01 11 48510955 48510955 C A OR4A47 Missense_Mutation p.A204D 0.46 deleterious_low_confidence(0) benign(0.158) TCGA-CN-4730-01 11 55861087 55861087 T C OR8I2 Missense_Mutation p.Y102H 0.45 tolerated(0.07) possibly_damaging(0.824) TCGA-CN-4730-01 11 5905675 5905675 C G OR52E4 Missense_Mutation p.I51M 0.21 deleterious(0) probably_damaging(0.999) TCGA-CN-4730-01 11 62361854 62361854 G C MTA2 Missense_Mutation p.S573C 0.20 tolerated_low_confidence(0.11) possibly_damaging(0.62) TCGA-CN-4730-01 11 62362037 62362037 G A MTA2 Missense_Mutation p.S548F 0.18 deleterious_low_confidence(0.03) benign(0.121) TCGA-CN-4730-01 11 6414465 6414465 C G SMPD1 Missense_Mutation p.L371V 0.14 tolerated(1) benign(0.076) TCGA-CN-4730-01 11 64519902 64519902 G A PYGM Silent p.F531F 0.13 TCGA-CN-4730-01 11 67257514 67257514 G C AIP Missense_Mutation p.E158D 0.67 tolerated(0.17) benign(0.2) TCGA-CN-4730-01 11 94038883 94038883 C T FOLR4 Silent p.C27C 0.48 TCGA-CN-4730-01 12 116420250 116420250 C T MED13L Missense_Mutation p.R1705H 0.39 deleterious(0) probably_damaging(0.998) TCGA-CN-4730-01 12 12251950 12251950 C G BCL2L14 3'UTR 0.24 TCGA-CN-4730-01 12 125621304 125621304 G A AACS Missense_Mutation p.G592E 0.46 deleterious(0.01) benign(0.078) TCGA-CN-4730-01 12 21668756 21668756 G A GOLT1B 3'UTR 0.15 TCGA-CN-4730-01 12 27148270 27148270 T C TM7SF3 Missense_Mutation p.Y197C 0.44 deleterious(0) possibly_damaging(0.907) TCGA-CN-4730-01 12 5021957 5021957 C G KCNA1 Silent p.V471V 0.15 TCGA-CN-4730-01 12 50500210 50500210 G C GPD1 Splice_Site p.X167_splice 0.23 TCGA-CN-4730-01 12 52864386 52864386 C G KRT6C Missense_Mutation p.R369T 0.18 deleterious(0) probably_damaging(0.963) TCGA-CN-4730-01 12 53240016 53240016 C T KRT78 Missense_Mutation p.E241K 0.22 tolerated(0.2) benign(0.124) TCGA-CN-4730-01 12 63541363 63541363 G T AVPR1A Missense_Mutation p.P345T 0.39 deleterious(0) probably_damaging(1) TCGA-CN-4730-01 12 6787551 6787551 G A ZNF384 Missense_Mutation p.S143L 0.06 tolerated(0.07) possibly_damaging(0.562) TCGA-CN-4730-01 12 75444702 75444702 G T KCNC2 Silent p.L361L 0.07 TCGA-CN-4730-01 12 81471976 81471976 C T ACSS3 Missense_Mutation p.P26L 0.44 tolerated_low_confidence(0.06) benign(0.001) TCGA-CN-4730-01 13 70413285 70413285 C T KLHL1 Missense_Mutation p.D413N 0.47 deleterious(0.01) benign(0.147) TCGA-CN-4730-01 14 106110177 106110177 G C IGHG2 Missense_Mutation p.H147Q 0.29 tolerated(1) benign(0) TCGA-CN-4730-01 14 20692282 20692282 T A OR11H6 Nonsense_Mutation p.Y138* 0.42 TCGA-CN-4730-01 14 23424391 23424391 G C HAUS4 Intron 0.47 TCGA-CN-4730-01 14 23524350 23524350 G C CDH24 Missense_Mutation p.I138M 0.17 deleterious(0) probably_damaging(1) TCGA-CN-4730-01 14 23528253 23528253 G A ACIN1 3'UTR 0.12 TCGA-CN-4730-01 14 23528257 23528257 G A ACIN1 3'UTR 0.14 TCGA-CN-4730-01 15 55652461 55652461 C A CCPG1 Missense_Mutation p.V504L 0.47 deleterious(0) probably_damaging(0.999) TCGA-CN-4730-01 15 90176982 90176982 G A KIF7 Missense_Mutation p.R843C 0.19 tolerated(0.09) probably_damaging(0.998) TCGA-CN-4730-01 16 240001 240001 G A LUC7L Missense_Mutation p.R314C 0.18 deleterious_low_confidence(0) unknown(0) TCGA-CN-4730-01 16 27772758 27772758 C G KIAA0556 Missense_Mutation p.S1219C 0.15 deleterious(0) probably_damaging(0.993) TCGA-CN-4730-01 16 30122798 30122798 C T GDPD3 Nonsense_Mutation p.W206* 0.31 TCGA-CN-4730-01 16 4164183 4164183 C T ADCY9 Missense_Mutation p.D421N 0.17 tolerated(0.09) probably_damaging(1) TCGA-CN-4730-01 16 4519402 4519402 C T NMRAL1 Silent p.V35V 0.31 TCGA-CN-4730-01 16 49430524 49430524 G T C16orf78 Missense_Mutation p.E195D 0.40 tolerated(0.12) benign(0.019) TCGA-CN-4730-01 16 55846957 55846957 T A CES1 Splice_Site p.X316_splice 0.40 TCGA-CN-4730-01 16 56977167 56977167 C G HERPUD1 Missense_Mutation p.L381V 0.17 deleterious(0) probably_damaging(0.999) TCGA-CN-4730-01 16 89348470 89348470 G A ANKRD11 Missense_Mutation p.R1494W 0.23 possibly_damaging(0.898) TCGA-CN-4730-01 17 27837971 27837971 G A TAOK1 Silent p.Q555Q 0.07 TCGA-CN-4730-01 17 37882022 37882022 G A ERBB2 Missense_Mutation p.E930K 0.05 deleterious(0.02) possibly_damaging(0.53) TCGA-CN-4730-01 17 38142913 38142913 A G PSMD3 Missense_Mutation p.Y166C 0.38 deleterious(0) probably_damaging(0.998) TCGA-CN-4730-01 17 38487504 38487504 G T RARA Missense_Mutation p.G12W 0.15 deleterious_low_confidence(0) benign(0.368) TCGA-CN-4730-01 17 39871892 39871892 C A GAST Silent p.L68L 0.22 TCGA-CN-4730-01 17 53345376 53345376 G A HLF Missense_Mutation p.S127N 0.19 tolerated(0.12) benign(0.037) TCGA-CN-4730-01 17 61901558 61901558 G C FTSJ3 Nonsense_Mutation p.S347* 0.04 TCGA-CN-4730-01 17 61902698 61902698 G A FTSJ3 Silent p.L167L 0.06 TCGA-CN-4730-01 18 5478351 5478351 T A EPB41L3 Missense_Mutation p.K90N 0.32 deleterious(0) benign(0.309) TCGA-CN-4730-01 18 64178822 64178822 G C CDH19 Missense_Mutation p.T520R 0.48 deleterious(0) possibly_damaging(0.588) TCGA-CN-4730-01 18 7231916 7231916 C T LRRC30 Silent p.I260I 0.44 TCGA-CN-4730-01 19 22363091 22363091 A G ZNF676 Silent p.P476P 0.22 TCGA-CN-4730-01 19 22363101 22363101 G C ZNF676 Missense_Mutation p.A473G 0.16 tolerated(1) benign(0) TCGA-CN-4730-01 19 37974837 37974837 G C ZNF570 Missense_Mutation p.E105Q 0.19 deleterious(0.02) benign(0.03) TCGA-CN-4730-01 19 42759169 42759169 G T AC006486.9 5'UTR 0.26 TCGA-CN-4730-01 19 4932906 4932906 G A MIR4747 3'Flank 0.25 TCGA-CN-4730-01 19 4932907 4932907 G C MIR4747 3'Flank 0.25 TCGA-CN-4730-01 19 54621975 54621975 T C PRPF31 Missense_Mutation p.I67T 0.15 deleterious(0) possibly_damaging(0.855) TCGA-CN-4730-01 19 56241286 56241286 T G NLRP9 Missense_Mutation p.L635F 0.37 tolerated(0.07) benign(0.093) TCGA-CN-4730-01 19 58050307 58050307 A T ZNF549 3'UTR 0.14 TCGA-CN-4730-01 19 7584188 7584188 A T ZNF358 Missense_Mutation p.E20D 0.44 tolerated_low_confidence(0.09) benign(0.034) TCGA-CN-4730-01 19 9271903 9271903 A T ZNF317 Nonsense_Mutation p.K528* 0.19 TCGA-CN-4730-01 1 111891150 111891150 C A PIFO Missense_Mutation p.H91N 0.21 tolerated(0.32) benign(0.003) TCGA-CN-4730-01 1 147094302 147094302 C T BCL9 Missense_Mutation p.P1045S 0.41 tolerated(0.15) probably_damaging(0.979) TCGA-CN-4730-01 1 153788833 153788833 G T GATAD2B Missense_Mutation p.H378N 0.14 tolerated(1) benign(0.006) TCGA-CN-4730-01 1 158724637 158724637 C A OR6K6 Missense_Mutation p.S11Y 0.24 deleterious_low_confidence(0) benign(0.041) TCGA-CN-4730-01 1 160134194 160134194 G T ATP1A4 Missense_Mutation p.G343W 0.20 deleterious(0) probably_damaging(1) TCGA-CN-4730-01 1 171492442 171492442 G A PRRC2C Missense_Mutation p.E304K 0.45 unknown(0) TCGA-CN-4730-01 1 174977745 174977745 G A CACYBP Missense_Mutation p.V145I 0.20 tolerated(0.62) benign(0.005) TCGA-CN-4730-01 1 201824934 201824934 C G IPO9 Missense_Mutation p.L332V 0.25 tolerated(0.06) benign(0.408) TCGA-CN-4730-01 1 203276399 203276399 G A BTG2 Missense_Mutation p.V104M 0.40 deleterious(0) probably_damaging(0.997) TCGA-CN-4730-01 1 207252372 207252372 G A PFKFB2 3'Flank 0.17 TCGA-CN-4730-01 1 226127192 226127192 C T LEFTY2 Silent p.S202S 0.24 TCGA-CN-4730-01 1 237829847 237829847 G T RYR2 Silent p.R2824R 0.32 TCGA-CN-4730-01 1 25549911 25549911 C T SYF2 Missense_Mutation p.R193Q 0.26 deleterious(0) probably_damaging(0.969) TCGA-CN-4730-01 1 26349620 26349620 C T EXTL1 Silent p.V161V 0.30 TCGA-CN-4730-01 1 27662079 27662079 G A TMEM222 3'UTR 0.33 TCGA-CN-4730-01 1 28536520 28536520 T A DNAJC8 Missense_Mutation p.D121V 0.18 deleterious(0.01) benign(0.122) TCGA-CN-4730-01 1 40007445 40007447 ATA - PPIEL RNA 0.57 TCGA-CN-4730-01 1 41107474 41107474 C T RIMS3 Missense_Mutation p.A42T 0.18 tolerated_low_confidence(1) benign(0.012) TCGA-CN-4730-01 1 75037806 75037806 C T C1orf173 Silent p.L1196L 0.39 TCGA-CN-4730-01 1 86499564 86499564 C A COL24A1 Missense_Mutation p.D665Y 0.20 deleterious(0) probably_damaging(1) TCGA-CN-4730-01 1 93649684 93649684 A C CCDC18 Missense_Mutation p.Q149P 0.17 tolerated(0.07) benign(0.027) TCGA-CN-4730-01 20 30363779 30363779 C G TPX2 Missense_Mutation p.L240V 0.09 deleterious(0.01) possibly_damaging(0.614) TCGA-CN-4730-01 20 35443638 35443638 C T SOGA1 Missense_Mutation p.G736E 0.36 tolerated(0.13) benign(0.119) TCGA-CN-4730-01 21 30315991 30315991 G C LTN1 Nonsense_Mutation p.Y1452* 0.43 TCGA-CN-4730-01 21 42821216 42821216 G A MX1 Missense_Mutation p.V476M 0.47 deleterious(0) probably_damaging(0.966) TCGA-CN-4730-01 22 44392241 44392241 G A SAMM50 Missense_Mutation p.G463E 0.23 deleterious(0) probably_damaging(0.999) TCGA-CN-4730-01 2 103061677 103061677 A G IL18RAP Missense_Mutation p.I317V 0.43 tolerated(0.13) benign(0.1) TCGA-CN-4730-01 2 106498068 106498068 G A NCK2 Missense_Mutation p.E171K 0.23 tolerated(0.84) benign(0.015) TCGA-CN-4730-01 2 113785523 113785523 C T IL36B Intron 0.14 TCGA-CN-4730-01 2 128253582 128253582 C T IWS1 Missense_Mutation p.A570T 0.40 deleterious(0) probably_damaging(0.978) TCGA-CN-4730-01 2 162820676 162820676 C T SLC4A10 Missense_Mutation p.P965L 0.24 deleterious(0) probably_damaging(1) TCGA-CN-4730-01 2 169993958 169993958 C G LRP2 Missense_Mutation p.E4522Q 0.25 probably_damaging(0.999) TCGA-CN-4730-01 2 170103911 170103911 G T LRP2 Nonsense_Mutation p.S962* 0.28 TCGA-CN-4730-01 2 175742727 175742727 T A CHN1 Silent p.A130A 0.11 TCGA-CN-4730-01 2 202050586 202050586 C G CASP10 Nonsense_Mutation p.S29* 0.19 TCGA-CN-4730-01 2 204594487 204594487 A T CD28 Missense_Mutation p.I176F 0.41 tolerated(0.7) benign(0.005) TCGA-CN-4730-01 2 21231200 21231200 C A APOB Missense_Mutation p.G2847V 0.18 benign(0.053) TCGA-CN-4730-01 2 232573282 232573282 G T PTMA 5'UTR 0.44 TCGA-CN-4730-01 2 31483527 31483527 G C EHD3 Silent p.L218L 0.23 TCGA-CN-4730-01 2 32698197 32698198 - T BIRC6 Frame_Shift_Ins p.N2205* 0.12 TCGA-CN-4730-01 2 32701366 32701366 A G BIRC6 Missense_Mutation p.Y2269C 0.33 probably_damaging(0.996) TCGA-CN-4730-01 2 39517434 39517434 T A MAP4K3 Missense_Mutation p.K438M 0.15 deleterious(0.05) probably_damaging(0.979) TCGA-CN-4730-01 2 45789838 45789838 A T SRBD1 Missense_Mutation p.S455T 0.18 deleterious(0.02) benign(0.062) TCGA-CN-4730-01 2 46770165 46770165 C A RHOQ 5'UTR 0.29 TCGA-CN-4730-01 2 97498369 97498369 C - CNNM3 3'UTR 0.24 TCGA-CN-4730-01 3 111688638 111688638 A G PHLDB2 Silent p.V1139V 0.30 TCGA-CN-4730-01 3 119396195 119396195 A T COX17 5'UTR 0.35 TCGA-CN-4730-01 3 154018467 154018467 T C DHX36 Silent p.V459V 0.30 TCGA-CN-4730-01 3 170002329 170002329 A T PRKCI Missense_Mutation p.N383I 0.25 deleterious(0) probably_damaging(0.923) TCGA-CN-4730-01 3 183368215 183368215 G A KLHL24 Missense_Mutation p.R24Q 0.31 tolerated_low_confidence(0.1) benign(0.005) TCGA-CN-4730-01 3 189349235 189349235 A G TP63 5'UTR 0.16 TCGA-CN-4730-01 3 194790315 194790315 C G XXYLT1 3'UTR 0.13 TCGA-CN-4730-01 3 38833599 38833599 A G SCN10A Missense_Mutation p.W111R 0.54 deleterious(0.02) possibly_damaging(0.498) TCGA-CN-4730-01 3 46026413 46026413 C G FYCO1 5'UTR 0.50 TCGA-CN-4730-01 3 47037919 47037919 C T NBEAL2 Silent p.S770S 0.35 TCGA-CN-4730-01 3 52269100 52269100 G C TWF2 Missense_Mutation p.F16L 0.29 tolerated(0.23) probably_damaging(0.997) TCGA-CN-4730-01 3 67054415 67054415 G C KBTBD8 Missense_Mutation p.G342R 0.50 deleterious(0) probably_damaging(0.999) TCGA-CN-4730-01 4 113352225 113352225 G C ALPK1 Missense_Mutation p.E508Q 0.29 tolerated(0.06) benign(0.439) TCGA-CN-4730-01 4 119059225 119059225 C T NDST3 Missense_Mutation p.T414M 0.04 deleterious(0.02) probably_damaging(0.984) TCGA-CN-4730-01 4 152203446 152203446 C T PRSS48 Missense_Mutation p.S121F 0.17 tolerated(0.74) benign(0.022) TCGA-CN-4730-01 4 153250883 153250883 G A FBXW7 Nonsense_Mutation p.R393* 0.65 TCGA-CN-4730-01 4 26422170 26422170 C G RBPJ Intron 0.33 TCGA-CN-4730-01 4 37633100 37633100 C T RELL1 Silent p.R242R 0.42 TCGA-CN-4730-01 4 57843128 57843128 C G NOA1 Silent p.A208A 0.33 TCGA-CN-4730-01 4 70361310 70361310 G C UGT2B4 Missense_Mutation p.I90M 0.21 tolerated(0.2) benign(0.063) TCGA-CN-4730-01 4 71201658 71201658 G C CABS1 Missense_Mutation p.R301T 0.19 tolerated(0.05) benign(0.018) TCGA-CN-4730-01 4 76927418 76927418 A G CXCL9 Missense_Mutation p.V25A 0.40 tolerated(0.11) benign(0.134) TCGA-CN-4730-01 4 83375957 83375957 G C ENOPH1 Missense_Mutation p.E158Q 0.22 deleterious(0.05) benign(0.268) TCGA-CN-4730-01 4 96091409 96091409 G A UNC5C Silent p.F842F 0.20 TCGA-CN-4730-01 5 13841896 13841896 G C DNAH5 Missense_Mutation p.Q1797E 0.17 benign(0.001) TCGA-CN-4730-01 5 140517292 140517292 G T PCDHB5 Missense_Mutation p.G759V 0.04 deleterious_low_confidence(0.01) benign(0.043) TCGA-CN-4730-01 5 141019628 141019628 G C RELL2 Silent p.G215G 0.28 TCGA-CN-4730-01 5 150696298 150696298 T C SLC36A2 3'UTR 0.52 TCGA-CN-4730-01 5 176637167 176637168 TT - NSD1 Frame_Shift_Del p.L590Ifs*5 0.37 TCGA-CN-4730-01 5 37291952 37291952 T G NUP155 3'UTR 0.06 TCGA-CN-4730-01 5 76359116 76359116 A C AGGF1 3'UTR 0.42 TCGA-CN-4730-01 5 95103849 95103849 G A RHOBTB3 Missense_Mutation p.D421N 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-CN-4730-01 6 112671535 112671536 - T RFPL4B Frame_Shift_Ins p.L211Pfs*4 0.23 TCGA-CN-4730-01 6 127648182 127648182 C T ECHDC1 Missense_Mutation p.D116N 0.14 deleterious(0.02) possibly_damaging(0.887) TCGA-CN-4730-01 6 150342164 150342164 C G RAET1L Missense_Mutation p.E170Q 0.23 deleterious(0.04) benign(0.413) TCGA-CN-4730-01 6 15523422 15523422 C G DTNBP1 Missense_Mutation p.E280D 0.24 tolerated(0.08) benign(0.015) TCGA-CN-4730-01 6 170060767 170060767 T C WDR27 Missense_Mutation p.Y374C 0.24 tolerated(0.23) benign(0.005) TCGA-CN-4730-01 6 26225622 26225622 G C HIST1H3E Missense_Mutation p.K80N 0.26 deleterious_low_confidence(0.04) benign(0.188) TCGA-CN-4730-01 6 41766378 41766378 G C USP49 3'UTR 0.40 TCGA-CN-4730-01 6 41773477 41773477 G C USP49 Silent p.L415L 0.20 TCGA-CN-4730-01 6 43152613 43152613 A G CUL9 Missense_Mutation p.M189V 0.35 deleterious(0) benign(0.399) TCGA-CN-4730-01 7 106877029 106877029 C G COG5 Missense_Mutation p.E684Q 0.24 tolerated(0.49) benign(0.008) TCGA-CN-4730-01 7 107408040 107408040 C T SLC26A3 Missense_Mutation p.R752H 0.37 deleterious_low_confidence(0.01) benign(0.04) TCGA-CN-4730-01 7 120655860 120655860 G C CPED1 Missense_Mutation p.E131Q 0.32 tolerated(0.26) benign(0.083) TCGA-CN-4730-01 7 12271661 12271661 G T TMEM106B 3'UTR 0.21 TCGA-CN-4730-01 7 142832288 142832288 C T PIP Missense_Mutation p.R33W 0.23 tolerated(0.1) possibly_damaging(0.842) TCGA-CN-4730-01 7 150767612 150767612 G T SLC4A2 Silent p.L506L 0.36 TCGA-CN-4730-01 7 150767613 150767613 C T SLC4A2 Silent p.L507L 0.38 TCGA-CN-4730-01 7 158529772 158529772 G C ESYT2 Nonsense_Mutation p.S816* 0.19 TCGA-CN-4730-01 7 27140524 27140524 C T HOXA2 Missense_Mutation p.E318K 0.38 deleterious(0) benign(0.031) TCGA-CN-4730-01 7 37947149 37947149 G A SFRP4 Missense_Mutation p.P325S 0.38 tolerated_low_confidence(0.64) benign(0) TCGA-CN-4730-01 7 53104019 53104019 C T POM121L12 Missense_Mutation p.P219S 0.06 deleterious(0.01) probably_damaging(0.932) TCGA-CN-4730-01 7 88962919 88962919 C T ZNF804B Missense_Mutation p.S208L 0.24 tolerated(0.07) benign(0.03) TCGA-CN-4730-01 8 100115242 100115242 C G VPS13B Silent p.L158L 0.18 TCGA-CN-4730-01 8 101020653 101020653 G A RGS22 Missense_Mutation p.L771F 0.17 tolerated(0.07) probably_damaging(1) TCGA-CN-4730-01 8 144990620 144990620 C T PLEC Missense_Mutation p.E4594K 0.20 possibly_damaging(0.9) TCGA-CN-4730-01 8 144993305 144993305 C T PLEC Missense_Mutation p.E3699K 0.17 possibly_damaging(0.837) TCGA-CN-4730-01 8 144993498 144993498 C T PLEC Silent p.E3634E 0.21 TCGA-CN-4730-01 8 144993503 144993503 C T PLEC Missense_Mutation p.E3633K 0.18 benign(0.103) TCGA-CN-4730-01 8 144993992 144993992 C T PLEC Missense_Mutation p.D3470N 0.23 benign(0.074) TCGA-CN-4730-01 8 144994286 144994286 C G PLEC Missense_Mutation p.E3372Q 0.18 benign(0.05) TCGA-CN-4730-01 8 144994712 144994712 C T PLEC Missense_Mutation p.E3230K 0.21 probably_damaging(0.999) TCGA-CN-4730-01 8 144995096 144995096 C T PLEC Missense_Mutation p.E3102K 0.26 probably_damaging(0.952) TCGA-CN-4730-01 8 144995838 144995838 C T PLEC Silent p.Q2854Q 0.29 TCGA-CN-4730-01 8 144996074 144996074 C TT PLEC Frame_Shift_Ins p.E2776Kfs*70 0.48 TCGA-CN-4730-01 8 144997355 144997355 C T PLEC Missense_Mutation p.E2385K 0.16 probably_damaging(0.993) TCGA-CN-4730-01 8 144997461 144997461 C T PLEC Silent p.L2349L 0.28 TCGA-CN-4730-01 8 144997511 144997511 C T PLEC Missense_Mutation p.E2333K 0.21 probably_damaging(0.952) TCGA-CN-4730-01 8 144997545 144997545 C T PLEC Silent p.V2321V 0.14 TCGA-CN-4730-01 8 144997569 144997569 C T PLEC Silent p.Q2313Q 0.11 TCGA-CN-4730-01 8 144997754 144997754 C T PLEC Missense_Mutation p.E2252K 0.23 unknown(0) TCGA-CN-4730-01 8 144998138 144998138 C T PLEC Missense_Mutation p.E2124K 0.21 unknown(0) TCGA-CN-4730-01 8 144998210 144998210 C G PLEC Missense_Mutation p.E2100Q 0.19 unknown(0) TCGA-CN-4730-01 8 144998264 144998264 C G PLEC Missense_Mutation p.E2082Q 0.12 unknown(0) TCGA-CN-4730-01 8 144998319 144998319 C G PLEC Missense_Mutation p.E2063D 0.10 unknown(0) TCGA-CN-4730-01 8 144998346 144998346 C G PLEC Silent p.L2054L 0.17 TCGA-CN-4730-01 8 144998529 144998529 G A PLEC Silent p.L1993L 0.36 TCGA-CN-4730-01 8 144999083 144999083 C T PLEC Missense_Mutation p.E1809K 0.42 unknown(0) TCGA-CN-4730-01 8 144999089 144999089 C G PLEC Missense_Mutation p.E1807Q 0.38 unknown(0) TCGA-CN-4730-01 8 18393239 18393239 G A PSD3 3'UTR 0.46 TCGA-CN-4730-01 8 41519012 41519012 C T ANK1 Intron 0.12 TCGA-CN-4730-01 8 56015393 56015393 C T XKR4 Silent p.I115I 0.46 TCGA-CN-4730-01 8 57354258 57354258 G T PENK Missense_Mutation p.A126D 0.21 tolerated(0.64) benign(0.002) TCGA-CN-4730-01 8 65494156 65494156 C T BHLHE22 Missense_Mutation p.P270L 0.28 deleterious(0) probably_damaging(1) TCGA-CN-4730-01 8 66989019 66989019 A C DNAJC5B Missense_Mutation p.K82Q 0.40 tolerated(0.56) benign(0.021) TCGA-CN-4730-01 8 67796029 67796029 C T MCMDC2 Silent p.L291L 0.48 TCGA-CN-4730-01 8 88885612 88885612 C T DCAF4L2 Silent p.A196A 0.23 TCGA-CN-4730-01 8 95547138 95547138 G A KIAA1429 Missense_Mutation p.S138F 0.23 deleterious(0) probably_damaging(0.997) TCGA-CN-4730-01 8 99114901 99114901 T C HRSP12 3'UTR 0.31 TCGA-CN-4730-01 9 131260723 131260723 G C ODF2 Missense_Mutation p.E682Q 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-CN-4730-01 9 131260797 131260797 G A ODF2 Silent p.R706R 0.18 TCGA-CN-4730-01 9 131261346 131261346 G C ODF2 Missense_Mutation p.E748Q 0.22 deleterious(0) probably_damaging(0.966) TCGA-CN-4730-01 9 17409412 17409412 C A CNTLN Missense_Mutation p.Q913K 0.20 tolerated(0.25) benign(0.006) TCGA-CN-4730-01 9 20986380 20986380 G A FOCAD Missense_Mutation p.V1608M 0.47 tolerated(0.13) benign(0.029) TCGA-CN-4730-01 9 4663379 4663379 G A PPAPDC2 3'UTR 0.59 TCGA-CN-4730-01 9 73150819 73150819 G C TRPM3 3'UTR 0.18 TCGA-CN-4730-01 9 96860086 96860086 G A PTPDC1 Missense_Mutation p.R411Q 0.16 tolerated(1) benign(0.001) TCGA-CN-4731-01 10 100143511 100143511 A C PYROXD2 3'UTR 0.33 TCGA-CN-4731-01 10 100182223 100182223 C T HPS1 Missense_Mutation p.R549H 0.27 deleterious(0) probably_damaging(0.979) TCGA-CN-4731-01 10 105148016 105148016 T G TAF5 3'UTR 0.29 TCGA-CN-4731-01 10 53459124 53459124 G A CSTF2T Silent p.C62C 0.33 TCGA-CN-4731-01 10 70531028 70531028 A G CCAR1 Silent p.K788K 0.30 TCGA-CN-4731-01 10 95995857 95995857 G A PLCE1 Silent p.L800L 0.12 TCGA-CN-4731-01 11 122680675 122680675 A G UBASH3B 3'UTR 0.17 TCGA-CN-4731-01 11 17427072 17427072 C A ABCC8 Missense_Mutation p.R1123I 0.31 deleterious(0) possibly_damaging(0.859) TCGA-CN-4731-01 11 43345053 43345053 C A API5 Missense_Mutation p.T206K 0.34 deleterious(0) probably_damaging(0.97) TCGA-CN-4731-01 11 56043909 56043909 G C OR5T1 Silent p.G265G 0.46 TCGA-CN-4731-01 11 61042028 61042028 G C VWCE Nonsense_Mutation p.Y508* 0.17 TCGA-CN-4731-01 11 67377002 67377002 C T NDUFV1 Missense_Mutation p.H136Y 0.26 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-CN-4731-01 11 69062839 69062839 C A MYEOV Nonsense_Mutation p.C6* 0.29 TCGA-CN-4731-01 11 84028144 84028144 G A DLG2 Intron 0.20 TCGA-CN-4731-01 12 121701709 121701709 G A CAMKK2 Missense_Mutation p.P220L 0.62 tolerated(0.22) benign(0.013) TCGA-CN-4731-01 12 21693415 21693415 G A GYS2 Missense_Mutation p.R580C 0.30 deleterious(0) probably_damaging(1) TCGA-CN-4731-01 12 49435775 49435775 T C KMT2D Splice_Site p.X2037_splice 0.88 TCGA-CN-4731-01 12 52201177 52201177 C T SCN8A Silent p.A1969A 0.41 TCGA-CN-4731-01 12 52378996 52378996 C T ACVR1B Nonsense_Mutation p.R375* 0.59 TCGA-CN-4731-01 12 52910945 52910945 C G KRT5 Missense_Mutation p.E388D 0.64 deleterious(0.03) possibly_damaging(0.534) TCGA-CN-4731-01 12 57571369 57571369 C T LRP1 Silent p.D1452D 0.16 TCGA-CN-4731-01 12 6632162 6632162 C G NCAPD2 Missense_Mutation p.S708C 0.28 deleterious(0) benign(0.044) TCGA-CN-4731-01 12 70824419 70824419 C T KCNMB4 Missense_Mutation p.R207C 0.74 deleterious(0.01) possibly_damaging(0.649) TCGA-CN-4731-01 13 25374506 25374506 T C RNF17 Missense_Mutation p.V531A 0.25 tolerated(0.33) benign(0.16) TCGA-CN-4731-01 13 39264672 39264672 G T FREM2 Missense_Mutation p.S1064I 0.35 deleterious(0) benign(0.212) TCGA-CN-4731-01 14 50736050 50736050 T G L2HGDH Splice_Site p.X247_splice 0.68 TCGA-CN-4731-01 14 62207599 62207599 C G HIF1A Missense_Mutation p.Q620E 0.33 tolerated(0.79) benign(0.005) TCGA-CN-4731-01 14 70515625 70515625 C G SLC8A3 Missense_Mutation p.A756P 0.23 deleterious(0) benign(0.289) TCGA-CN-4731-01 14 95033334 95033334 C G SERPINA4 Nonsense_Mutation p.S226* 0.28 TCGA-CN-4731-01 15 25488772 25488772 G A SNORD115-40 RNA 0.30 TCGA-CN-4731-01 15 33260945 33260945 T C FMN1 Missense_Mutation p.Y763C 0.34 deleterious(0) probably_damaging(0.998) TCGA-CN-4731-01 15 35530016 35530016 G A ANP32AP1 RNA 0.23 TCGA-CN-4731-01 16 20565181 20565181 A G ACSM2B Missense_Mutation p.F220L 0.33 deleterious(0.01) probably_damaging(1) TCGA-CN-4731-01 16 2264251 2264251 G C PGP Missense_Mutation p.F176L 0.19 tolerated(0.15) probably_damaging(0.993) TCGA-CN-4731-01 16 2881955 2881955 G A ZG16B Missense_Mutation p.R141H 0.31 deleterious(0) possibly_damaging(0.876) TCGA-CN-4731-01 16 29676288 29676288 C T SPN 3'UTR 0.25 TCGA-CN-4731-01 16 29923281 29923281 C T KCTD13 Silent p.K168K 0.35 TCGA-CN-4731-01 16 31332573 31332573 C A ITGAM Silent p.G574G 0.29 TCGA-CN-4731-01 16 3613683 3613683 C G NLRC3 Missense_Mutation p.D466H 0.31 deleterious(0) probably_damaging(0.967) TCGA-CN-4731-01 16 53639439 53639439 G A RPGRIP1L Silent p.A1263A 0.26 TCGA-CN-4731-01 16 78133748 78133748 A T WWOX Nonsense_Mutation p.R25* 0.38 TCGA-CN-4731-01 16 81077308 81077308 C T ATMIN Missense_Mutation p.T402M 0.35 tolerated(0.14) benign(0.007) TCGA-CN-4731-01 16 89257810 89257810 C T CDH15 Silent p.H435H 0.41 TCGA-CN-4731-01 17 10295236 10295236 G A MYH8 Missense_Mutation p.A1876V 0.29 tolerated(0.13) benign(0.001) TCGA-CN-4731-01 17 17079760 17079760 A G MPRIP Silent p.E910E 0.28 TCGA-CN-4731-01 17 20109083 20109083 C T SPECC1 Missense_Mutation p.T574M 0.32 tolerated(0.15) benign(0.012) TCGA-CN-4731-01 17 27075534 27075534 C T TRAF4 Silent p.H210H 0.25 TCGA-CN-4731-01 17 48263803 48263803 C T COL1A1 Missense_Mutation p.E1294K 0.35 unknown(0) TCGA-CN-4731-01 17 48823124 48823124 G A LUC7L3 Missense_Mutation p.R246H 0.37 deleterious(0.02) unknown(0) TCGA-CN-4731-01 17 59115302 59115302 C A BCAS3 Silent p.G620G 0.69 TCGA-CN-4731-01 17 61897782 61897782 C T FTSJ3 Missense_Mutation p.D697N 0.27 deleterious(0.04) benign(0.019) TCGA-CN-4731-01 17 62891068 62891068 C T LRRC37A3 Missense_Mutation p.E770K 0.26 tolerated(0.1) benign(0.147) TCGA-CN-4731-01 17 7415500 7415500 C T POLR2A Silent p.A1443A 0.34 TCGA-CN-4731-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.59 TCGA-CN-4731-01 17 7734485 7734485 C T DNAH2 Silent p.G4104G 0.28 TCGA-CN-4731-01 18 21053506 21053506 T A RIOK3 Missense_Mutation p.F310Y 0.29 tolerated(1) benign(0.002) TCGA-CN-4731-01 18 5397351 5397351 C G EPB41L3 Missense_Mutation p.E849D 0.38 tolerated_low_confidence(0.2) benign(0.003) TCGA-CN-4731-01 18 55024676 55024676 G A ST8SIA3 Missense_Mutation p.G279R 0.28 probably_damaging(1) TCGA-CN-4731-01 18 55336432 55336432 T C ATP8B1 Intron 0.25 TCGA-CN-4731-01 19 11363491 11363491 G A DOCK6 Silent p.C92C 0.06 TCGA-CN-4731-01 19 13323202 13323202 G C CACNA1A Missense_Mutation p.S2062C 0.15 benign(0.001) TCGA-CN-4731-01 19 17412027 17412027 G A ABHD8 Silent p.P133P 0.46 TCGA-CN-4731-01 19 37038095 37038095 A G ZNF529 Silent p.C455C 0.23 TCGA-CN-4731-01 19 40520097 40520097 G A ZNF546 Missense_Mutation p.G307E 0.30 deleterious(0.02) probably_damaging(0.972) TCGA-CN-4731-01 19 55087422 55087422 G T LILRA2 Silent p.L367L 0.40 TCGA-CN-4731-01 19 55417683 55417683 G A NCR1 Missense_Mutation p.A21T 0.36 tolerated(1) benign(0.002) TCGA-CN-4731-01 19 58048899 58048900 CT - ZNF549 Frame_Shift_Del p.L177Vfs*11 0.26 TCGA-CN-4731-01 19 9965427 9965427 G A OLFM2 Missense_Mutation p.A267V 0.10 deleterious(0.02) probably_damaging(0.982) TCGA-CN-4731-01 1 145535006 145535006 G C ITGA10 Missense_Mutation p.A637P 0.24 deleterious(0) probably_damaging(0.928) TCGA-CN-4731-01 1 155240700 155240700 C T CLK2 Silent p.R23R 0.29 TCGA-CN-4731-01 1 204587388 204587388 C A LRRN2 Missense_Mutation p.G578V 0.20 deleterious(0.01) probably_damaging(1) TCGA-CN-4731-01 1 21896804 21896804 C G ALPL Missense_Mutation p.H267D 0.69 deleterious(0.01) benign(0.219) TCGA-CN-4731-01 1 248059227 248059227 G T OR2W3 Silent p.L113L 0.34 TCGA-CN-4731-01 1 40542559 40542559 T A PPT1 Missense_Mutation p.Q251H 0.08 deleterious(0) probably_damaging(0.99) TCGA-CN-4731-01 1 43783610 43783610 G A TIE1 Missense_Mutation p.R930Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-CN-4731-01 1 70614215 70614215 T - LRRC40 Frame_Shift_Del p.D553Afs*13 0.26 TCGA-CN-4731-01 1 891548 891548 T A NOC2L Silent p.R178R 0.67 TCGA-CN-4731-01 20 13251361 13251361 G C ISM1 Missense_Mutation p.D117H 0.13 deleterious(0) probably_damaging(0.969) TCGA-CN-4731-01 20 25262777 25262777 C A PYGB Silent p.I504I 0.11 TCGA-CN-4731-01 20 30497542 30497542 G T TTLL9 Silent p.L107L 0.23 TCGA-CN-4731-01 20 35422752 35422752 G A SOGA1 Missense_Mutation p.P1245S 0.32 deleterious(0.02) probably_damaging(1) TCGA-CN-4731-01 20 43726837 43726837 C T KCNS1 Silent p.A192A 0.22 TCGA-CN-4731-01 20 62126260 62126265 TTCCTT G EEF1A2 Frame_Shift_Del p.K172Rfs*26 0.17 TCGA-CN-4731-01 21 30445933 30445933 T A CCT8 5'UTR 0.34 TCGA-CN-4731-01 21 31654321 31654321 A C KRTAP24-1 3'UTR 0.22 TCGA-CN-4731-01 22 29654896 29654896 G A EMID1 Missense_Mutation p.R432Q 0.31 tolerated(0.2) benign(0.01) TCGA-CN-4731-01 22 34046371 34046371 C A LARGE Silent p.P130P 0.24 TCGA-CN-4731-01 22 37325494 37325494 T A CSF2RB Missense_Mutation p.F148I 0.34 deleterious(0.01) benign(0.399) TCGA-CN-4731-01 2 120128364 120128364 G A DBI Nonsense_Mutation p.W120* 0.24 TCGA-CN-4731-01 2 136418927 136418927 C T R3HDM1 Silent p.L671L 0.32 TCGA-CN-4731-01 2 160843742 160843742 C A PLA2R1 Missense_Mutation p.E654D 0.33 tolerated(0.13) benign(0.397) TCGA-CN-4731-01 2 165378524 165378524 G C GRB14 Missense_Mutation p.S261C 0.27 deleterious(0) probably_damaging(0.999) TCGA-CN-4731-01 2 168067394 168067394 T A XIRP2 Missense_Mutation p.F238I 0.26 probably_damaging(0.913) TCGA-CN-4731-01 2 215645700 215645700 G T BARD1 Missense_Mutation p.P300T 0.23 tolerated(0.05) benign(0.081) TCGA-CN-4731-01 2 223158523 223158523 C G PAX3 Intron 0.15 TCGA-CN-4731-01 2 26717900 26717900 C T OTOF Silent p.L269L 0.30 TCGA-CN-4731-01 2 43452301 43452302 - T ZFP36L2 Frame_Shift_Ins p.F214Lfs*260 0.34 TCGA-CN-4731-01 2 50463980 50463980 A T NRXN1 Missense_Mutation p.L1205M 0.29 tolerated(0.05) probably_damaging(0.998) TCGA-CN-4731-01 2 85769770 85769770 G A MAT2A Missense_Mutation p.G284E 0.34 deleterious(0) probably_damaging(1) TCGA-CN-4731-01 2 95539278 95539278 T A TEKT4 Missense_Mutation p.I171N 0.33 deleterious(0) possibly_damaging(0.9) TCGA-CN-4731-01 3 111812254 111812260 AAGATGC - C3orf52 Frame_Shift_Del p.R63Nfs*4 0.29 TCGA-CN-4731-01 3 122287599 122287599 T A DTX3L Silent p.S221S 0.34 TCGA-CN-4731-01 3 135797293 135797293 C A PPP2R3A Missense_Mutation p.Q877K 0.21 deleterious(0.01) benign(0.132) TCGA-CN-4731-01 3 160395542 160395542 C T ARL14 Silent p.I136I 0.25 TCGA-CN-4731-01 3 171406608 171406608 T C PLD1 Missense_Mutation p.K466R 0.18 deleterious(0) probably_damaging(0.999) TCGA-CN-4731-01 3 173993199 173993199 C T NLGN1 Silent p.F247F 0.20 TCGA-CN-4731-01 3 190930421 190930421 G C OSTN Missense_Mutation p.E34Q 0.27 tolerated(0.38) benign(0.145) TCGA-CN-4731-01 3 30691918 30691920 TGA - TGFBR2 In_Frame_Del p.D166del 0.45 TCGA-CN-4731-01 3 32750219 32750219 T A CNOT10 Missense_Mutation p.Y173N 0.51 tolerated(0.14) possibly_damaging(0.861) TCGA-CN-4731-01 3 45636953 45636953 A G LIMD1 Silent p.P194P 0.47 TCGA-CN-4731-01 4 114264272 114264272 G T ANK2 Nonsense_Mutation p.E1408* 0.30 TCGA-CN-4731-01 4 123305081 123305081 A G ADAD1 Silent p.L163L 0.24 TCGA-CN-4731-01 4 187549454 187549454 G - FAT1 Frame_Shift_Del p.T1555Rfs*30 0.33 TCGA-CN-4731-01 4 187557332 187557333 - A FAT1 Frame_Shift_Ins p.E1344* 0.34 TCGA-CN-4731-01 4 2273119 2273119 G T ZFYVE28 Missense_Mutation p.D817E 0.30 deleterious(0) probably_damaging(1) TCGA-CN-4731-01 4 41749528 41749528 G A PHOX2B Silent p.H89H 0.26 TCGA-CN-4731-01 4 48096216 48096216 G T TXK Missense_Mutation p.T196K 0.24 tolerated(1) benign(0.138) TCGA-CN-4731-01 4 7056307 7056307 C G TADA2B Nonsense_Mutation p.Y263* 0.23 TCGA-CN-4731-01 5 130840396 130840396 C T RAPGEF6 Missense_Mutation p.E393K 0.28 tolerated(0.08) benign(0.02) TCGA-CN-4731-01 5 145252398 145252398 G A GRXCR2 Missense_Mutation p.P45L 0.41 deleterious(0) probably_damaging(0.944) TCGA-CN-4731-01 5 150924382 150924382 A - FAT2 Frame_Shift_Del p.N2102Kfs*35 0.39 TCGA-CN-4731-01 5 16616784 16616784 G A FAM134B Silent p.F99F 0.19 TCGA-CN-4731-01 5 2749083 2749083 C T IRX2 Missense_Mutation p.D247N 0.16 tolerated(0.23) benign(0.322) TCGA-CN-4731-01 5 33576201 33576201 G A ADAMTS12 Silent p.N1310N 0.16 TCGA-CN-4731-01 5 801279 801279 C T ZDHHC11 Silent p.G394G 0.15 TCGA-CN-4731-01 6 129674411 129674411 C T LAMA2 Silent p.V1542V 0.45 TCGA-CN-4731-01 6 26056369 26056369 C G HIST1H1C Silent p.T96T 0.17 TCGA-CN-4731-01 6 28269361 28269361 A T PGBD1 Missense_Mutation p.Q577L 0.38 tolerated(0.27) possibly_damaging(0.516) TCGA-CN-4731-01 6 35466208 35466208 C T TULP1 Missense_Mutation p.V509M 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-4731-01 6 44275034 44275034 A T AARS2 Missense_Mutation p.L331H 0.31 deleterious(0) probably_damaging(0.997) TCGA-CN-4731-01 6 56394429 56394429 C T DST Silent p.E3181E 0.26 TCGA-CN-4731-01 6 74116174 74116174 C T DDX43 Missense_Mutation p.P299S 0.27 deleterious(0) probably_damaging(0.999) TCGA-CN-4731-01 6 84669633 84669633 A C CYB5R4 3'UTR 0.41 TCGA-CN-4731-01 7 142836666 142836666 T G PIP Silent p.P124P 0.40 TCGA-CN-4731-01 7 80091853 80091853 C A GNAT3 Missense_Mutation p.A229S 0.07 tolerated(0.24) probably_damaging(1) TCGA-CN-4731-01 8 100533240 100533240 T A VPS13B Splice_Site p.X1607_splice 0.40 TCGA-CN-4731-01 8 105235966 105235966 C T RIMS2 Intron 0.12 TCGA-CN-4731-01 8 118552148 118552148 G A MED30 Silent p.L156L 0.30 TCGA-CN-4731-01 8 43046738 43046738 C A HGSNAT Missense_Mutation p.T417N 0.18 tolerated(0.09) benign(0.134) TCGA-CN-4731-01 8 48874211 48874211 T C MCM4 Missense_Mutation p.F69S 0.09 tolerated(0.44) benign(0.008) TCGA-CN-4731-01 8 55539813 55539813 C A RP1 Nonsense_Mutation p.S1124* 0.29 TCGA-CN-4731-01 9 130475482 130475482 T - C9orf117 Frame_Shift_Del p.E497Rfs*8 0.29 TCGA-CN-4731-01 9 135153533 135153533 C G SETX Missense_Mutation p.V2256L 0.18 deleterious(0.02) benign(0.257) TCGA-CN-4731-01 9 140510521 140510521 A G C9orf37 Missense_Mutation p.I44T 0.28 deleterious_low_confidence(0.01) benign(0.291) TCGA-CN-4731-01 9 21968242 21968242 C T CDKN2A Splice_Site 0.47 TCGA-CN-4731-01 9 35555657 35555657 G A RUSC2 Missense_Mutation p.R872Q 0.36 tolerated(0.17) probably_damaging(0.99) TCGA-CN-4731-01 9 35689892 35689892 C T TPM2 5'UTR 0.77 TCGA-CN-4731-01 9 74863197 74863197 G A GDA Missense_Mutation p.R435Q 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-CN-4731-01 X 54209173 54209190 CAGCGCTGACAAGTAGCC - FAM120C In_Frame_Del p.G148_L153del 0.28 TCGA-CN-4731-01 X 69507978 69507978 A C PDZD11 Missense_Mutation p.F73V 0.42 deleterious(0) possibly_damaging(0.9) TCGA-CN-4731-01 X 80377098 80377098 G A HMGN5 5'UTR 0.59 TCGA-CN-4733-01 12 100784777 100784777 A G SLC17A8 Splice_Site p.X119_splice 0.08 TCGA-CN-4733-01 12 1221439 1221439 A T ERC1 Missense_Mutation p.K459M 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-CN-4733-01 12 8672931 8672931 G A CLEC4D Missense_Mutation p.R165H 0.06 tolerated(1) benign(0.004) TCGA-CN-4733-01 12 98941400 98941400 C T TMPO Missense_Mutation p.L268F 0.09 tolerated(0.72) benign(0.028) TCGA-CN-4733-01 13 21729856 21729856 C G SKA3 Missense_Mutation p.R405P 0.06 tolerated(0.21) benign(0.018) TCGA-CN-4733-01 14 24788554 24788554 G A ADCY4 Missense_Mutation p.S941F 0.10 deleterious(0.01) possibly_damaging(0.797) TCGA-CN-4733-01 14 64656947 64656947 C T SYNE2 Silent p.I6010I 0.08 TCGA-CN-4733-01 15 91433125 91433125 C T FES Nonsense_Mutation p.Q328* 0.04 TCGA-CN-4733-01 16 15718917 15718917 C T KIAA0430 Silent p.P689P 0.09 TCGA-CN-4733-01 16 58319891 58319892 GT - PRSS54 Frame_Shift_Del p.P158Tfs*35 0.08 TCGA-CN-4733-01 16 71898871 71898871 T A ZNF821 Nonsense_Mutation p.K83* 0.08 TCGA-CN-4733-01 17 40716511 40716511 C G COASY Silent p.L350L 0.05 TCGA-CN-4733-01 17 46847448 46847448 G A TTLL6 Silent p.S684S 0.08 TCGA-CN-4733-01 17 63554319 63554319 C T AXIN2 Silent p.E140E 0.03 TCGA-CN-4733-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.21 tolerated(0.13) possibly_damaging(0.631) TCGA-CN-4733-01 19 38704349 38704349 G A DPF1 Missense_Mutation p.R343W 0.06 deleterious(0) probably_damaging(0.963) TCGA-CN-4733-01 19 8808007 8808007 C T ACTL9 Missense_Mutation p.G349S 0.09 deleterious(0) probably_damaging(1) TCGA-CN-4733-01 1 10363666 10363666 C T KIF1B Intron 0.06 TCGA-CN-4733-01 1 12819314 12819314 C T C1orf158 Silent p.D99D 0.05 TCGA-CN-4733-01 1 156237465 156237465 C T SMG5 Missense_Mutation p.V305M 0.21 tolerated(0.11) benign(0.004) TCGA-CN-4733-01 1 27089711 27089711 C T ARID1A Silent p.G889G 0.09 TCGA-CN-4733-01 1 29475489 29475489 C G SRSF4 Missense_Mutation p.E306D 0.04 tolerated_low_confidence(0.11) unknown(0) TCGA-CN-4733-01 1 47717292 47717292 C A STIL Missense_Mutation p.G1128V 0.04 deleterious(0) probably_damaging(1) TCGA-CN-4733-01 20 18123449 18123449 G A CSRP2BP Missense_Mutation p.D49N 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CN-4733-01 22 19028791 19028791 G A DGCR2 Silent p.L392L 0.09 TCGA-CN-4733-01 22 36916654 36916654 G A EIF3D Missense_Mutation p.R183C 0.06 deleterious(0.01) possibly_damaging(0.892) TCGA-CN-4733-01 22 37891803 37891803 C T CARD10 Missense_Mutation p.R756Q 0.13 tolerated(0.15) benign(0.155) TCGA-CN-4733-01 2 168100193 168100193 A G XIRP2 Missense_Mutation p.K764R 0.05 benign(0.205) TCGA-CN-4733-01 4 114290865 114290865 G A ANK2 Silent p.E3838E 0.13 TCGA-CN-4733-01 4 6083476 6083476 G A JAKMIP1 Missense_Mutation p.R321C 0.08 deleterious(0) probably_damaging(0.949) TCGA-CN-4733-01 5 13692178 13692178 T C DNAH5 Missense_Mutation p.Y4597C 0.05 probably_damaging(0.926) TCGA-CN-4733-01 6 46661019 46661019 G A TDRD6 Silent p.Q1718Q 0.04 TCGA-CN-4733-01 X 47045133 47045133 C T RBM10 Missense_Mutation p.R792W 0.20 deleterious(0) possibly_damaging(0.874) TCGA-CN-4734-01 10 128974488 128974488 C A FAM196A Nonsense_Mutation p.E58* 0.23 TCGA-CN-4734-01 10 135126169 135126169 C T ZNF511 Intron 0.33 TCGA-CN-4734-01 10 21435284 21435284 G A C10orf113 Missense_Mutation p.P52S 0.22 tolerated_low_confidence(0.59) probably_damaging(0.932) TCGA-CN-4734-01 10 75562342 75562342 G C NDST2 Intron 0.25 TCGA-CN-4734-01 10 75562403 75562403 G C NDST2 Intron 0.17 TCGA-CN-4734-01 10 7848971 7848971 G A ATP5C1 Intron 0.26 TCGA-CN-4734-01 10 98312702 98312702 C T TM9SF3 Missense_Mutation p.E259K 0.27 tolerated(0.07) benign(0.099) TCGA-CN-4734-01 11 102988581 102988581 C T DYNC2H1 Missense_Mutation p.R330C 0.19 probably_damaging(0.998) TCGA-CN-4734-01 11 10821202 10821202 T C EIF4G2 Missense_Mutation p.I741V 0.25 deleterious(0.02) probably_damaging(0.942) TCGA-CN-4734-01 11 118506147 118506147 G C PHLDB1 Missense_Mutation p.E806Q 0.23 deleterious(0) possibly_damaging(0.501) TCGA-CN-4734-01 11 14902248 14902248 C G CYP2R1 Missense_Mutation p.R145P 0.17 deleterious(0) possibly_damaging(0.747) TCGA-CN-4734-01 11 5602923 5602923 C A OR52B6 Missense_Mutation p.P273T 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-4734-01 11 57155245 57155245 C T PRG2 Missense_Mutation p.V198M 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-CN-4734-01 11 57382082 57382082 G A SERPING1 3'UTR 0.31 TCGA-CN-4734-01 11 58034971 58034971 C T OR10W1 Silent p.P120P 0.17 TCGA-CN-4734-01 11 62201218 62201218 C T AHNAK 3'UTR 0.20 TCGA-CN-4734-01 11 68772961 68772961 C T MRGPRF Missense_Mutation p.E273K 0.38 tolerated(0.52) probably_damaging(0.989) TCGA-CN-4734-01 11 71712615 71712615 G C IL18BP Intron 0.17 TCGA-CN-4734-01 11 9430055 9430055 G C IPO7 Missense_Mutation p.M63I 0.24 deleterious(0.01) benign(0.276) TCGA-CN-4734-01 12 101477507 101477507 A G ANO4 Missense_Mutation p.N448D 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4734-01 12 102127427 102127427 G C SYCP3 Missense_Mutation p.Q127E 0.41 deleterious(0.04) benign(0.443) TCGA-CN-4734-01 12 116457051 116457051 G A MED13L Silent p.T329T 0.14 TCGA-CN-4734-01 12 12284775 12284775 G A LRP6 Missense_Mutation p.S1317L 0.20 tolerated(0.05) probably_damaging(0.997) TCGA-CN-4734-01 12 18473914 18473914 C G PIK3C2G Missense_Mutation p.Q386E 0.15 tolerated(0.43) benign(0.003) TCGA-CN-4734-01 12 21626554 21626554 G C RECQL Missense_Mutation p.Q460E 0.23 tolerated(1) benign(0) TCGA-CN-4734-01 12 29628067 29628067 C A OVCH1 Silent p.T509T 0.55 TCGA-CN-4734-01 12 53457707 53457707 C A TENC1 3'UTR 0.26 TCGA-CN-4734-01 12 5941701 5941701 C T ANO2 Silent p.S230S 0.14 TCGA-CN-4734-01 12 6659915 6659915 C T IFFO1 Silent p.L292L 0.36 TCGA-CN-4734-01 12 69042539 69042539 G A RAP1B Missense_Mutation p.G12E 0.37 deleterious(0) probably_damaging(1) TCGA-CN-4734-01 12 69250409 69250409 C G CPM Missense_Mutation p.E380D 0.23 tolerated(0.56) benign(0) TCGA-CN-4734-01 12 81101864 81101864 C T MYF6 Silent p.A122A 0.14 TCGA-CN-4734-01 12 8374610 8374610 G A FAM90A1 Silent p.N401N 0.27 TCGA-CN-4734-01 12 88589182 88589182 C G TMTC3 Nonsense_Mutation p.S834* 0.44 TCGA-CN-4734-01 12 95927270 95927270 G A USP44 Nonsense_Mutation p.Q255* 0.13 TCGA-CN-4734-01 13 19751261 19751261 C T TUBA3C Missense_Mutation p.V288M 0.24 deleterious_low_confidence(0) benign(0.118) TCGA-CN-4734-01 13 43180976 43180976 G A TNFSF11 Silent p.E292E 0.22 TCGA-CN-4734-01 14 100119154 100119154 C T HHIPL1 Silent p.S283S 0.24 TCGA-CN-4734-01 14 102509076 102509076 G A DYNC1H1 Silent p.R4168R 0.51 TCGA-CN-4734-01 14 23898464 23898464 C T MYH7 Missense_Mutation p.V411I 0.62 deleterious(0.05) probably_damaging(0.939) TCGA-CN-4734-01 14 45432126 45432126 G A FAM179B Missense_Mutation p.E168K 0.59 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-CN-4734-01 14 64153029 64153029 C G SGPP1 Missense_Mutation p.V374L 0.30 tolerated(0.38) benign(0.001) TCGA-CN-4734-01 14 90770702 90770702 G A NRDE2 Silent p.C194C 0.15 TCGA-CN-4734-01 15 30018667 30018667 A G TJP1 Silent p.N776N 0.25 TCGA-CN-4734-01 15 45564978 45564978 C G SLC28A2 Missense_Mutation p.Q619E 0.30 tolerated(0.17) benign(0.118) TCGA-CN-4734-01 15 54305667 54305667 G C UNC13C Missense_Mutation p.K189N 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CN-4734-01 15 78454629 78454629 G A IDH3A Silent p.K177K 0.21 TCGA-CN-4734-01 16 29811084 29811084 G A KIF22 Missense_Mutation p.E376K 0.27 tolerated(0.08) benign(0.038) TCGA-CN-4734-01 16 31404708 31404708 G A ITGAD Silent p.L9L 0.28 TCGA-CN-4734-01 16 47694703 47694703 C G PHKB Silent p.P723P 0.16 TCGA-CN-4734-01 16 56878443 56878443 C G NUP93 Silent p.T794T 0.41 TCGA-CN-4734-01 16 69681025 69681025 C T NFAT5 Silent p.T116T 0.24 TCGA-CN-4734-01 16 81295760 81295760 C G BCMO1 Missense_Mutation p.H115D 0.27 tolerated(0.08) probably_damaging(0.968) TCGA-CN-4734-01 16 83983085 83983085 C T OSGIN1 5'UTR 0.33 TCGA-CN-4734-01 16 87367628 87367628 C T FBXO31 Missense_Mutation p.G421S 0.19 deleterious(0.03) benign(0.013) TCGA-CN-4734-01 17 10219279 10219279 C T MYH13 Missense_Mutation p.E1268K 0.24 deleterious(0) benign(0.027) TCGA-CN-4734-01 17 10231210 10231210 C G MYH13 Missense_Mutation p.K888N 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-CN-4734-01 17 10231229 10231229 A T MYH13 Missense_Mutation p.V882D 0.19 deleterious(0.01) possibly_damaging(0.518) TCGA-CN-4734-01 17 1747221 1747221 G A RPA1 Missense_Mutation p.R31H 0.18 deleterious(0) probably_damaging(0.987) TCGA-CN-4734-01 17 18022599 18022599 G A MYO15A Missense_Mutation p.R162H 0.15 probably_damaging(0.989) TCGA-CN-4734-01 17 26101285 26101285 G T NOS2 Missense_Mutation p.Q492K 0.27 deleterious(0) probably_damaging(1) TCGA-CN-4734-01 17 27889909 27889909 G A ABHD15 Silent p.D359D 0.11 TCGA-CN-4734-01 17 27959836 27959836 C G SSH2 Missense_Mutation p.Q765H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-CN-4734-01 17 39019389 39019389 G A KRT12 Silent p.D434D 0.22 TCGA-CN-4734-01 17 46654222 46654222 G C HOXB4 Missense_Mutation p.I206M 0.22 deleterious(0) probably_damaging(0.994) TCGA-CN-4734-01 17 61988361 61988361 C G CSHL1 Intron 0.25 TCGA-CN-4734-01 17 7329025 7329025 G A C17orf74 Nonsense_Mutation p.W6* 0.27 TCGA-CN-4734-01 18 22805215 22805215 G A ZNF521 Silent p.D889D 0.28 TCGA-CN-4734-01 18 31319619 31319619 G C ASXL3 Missense_Mutation p.E751Q 0.26 possibly_damaging(0.838) TCGA-CN-4734-01 18 59888730 59888730 G A KIAA1468 Silent p.Q286Q 0.21 TCGA-CN-4734-01 18 76754267 76754267 G A SALL3 Missense_Mutation p.R759H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-4734-01 19 13910721 13910721 G A ZSWIM4 Missense_Mutation p.R114H 0.10 deleterious(0.05) possibly_damaging(0.603) TCGA-CN-4734-01 19 15918182 15918182 G A OR10H1 Silent p.I222I 0.15 TCGA-CN-4734-01 19 18254654 18254654 G A MAST3 Silent p.L778L 0.27 TCGA-CN-4734-01 19 19230817 19230817 G A TMEM161A Silent p.L454L 0.33 TCGA-CN-4734-01 19 35773435 35773435 G C HAMP 5'UTR 0.26 TCGA-CN-4734-01 19 40392591 40392591 C T FCGBP Missense_Mutation p.G2638E 0.20 benign(0.007) TCGA-CN-4734-01 19 43530465 43530465 G C PSG11 Silent p.L20L 0.18 TCGA-CN-4734-01 19 44341279 44341279 G A ZNF283 Silent p.R95R 0.30 TCGA-CN-4734-01 19 46891915 46891915 G A PPP5C Missense_Mutation p.E428K 0.22 deleterious(0) probably_damaging(1) TCGA-CN-4734-01 19 49368815 49368815 G A PLEKHA4 Missense_Mutation p.A46V 0.20 deleterious(0) probably_damaging(0.997) TCGA-CN-4734-01 19 53059250 53059250 C G ZNF808 3'UTR 0.19 TCGA-CN-4734-01 19 54849916 54849916 C T LILRA4 Missense_Mutation p.G36S 0.28 tolerated(0.1) benign(0.44) TCGA-CN-4734-01 19 6466612 6466612 G A CRB3 Missense_Mutation p.E98K 0.20 deleterious(0) possibly_damaging(0.81) TCGA-CN-4734-01 19 9226035 9226035 G A OR7G1 Silent p.L135L 0.23 TCGA-CN-4734-01 1 12251958 12251958 G A TNFRSF1B Silent p.P145P 0.62 TCGA-CN-4734-01 1 154574600 154574600 T C ADAR Missense_Mutation p.N173S 0.22 deleterious(0) probably_damaging(1) TCGA-CN-4734-01 1 155057801 155057801 G A EFNA3 Silent p.K121K 0.19 TCGA-CN-4734-01 1 158650472 158650472 G A SPTA1 Silent p.T193T 0.21 TCGA-CN-4734-01 1 161693366 161693366 C T FCRLB Missense_Mutation p.R88W 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-CN-4734-01 1 16464404 16464404 G C EPHA2 Nonsense_Mutation p.S419* 0.51 TCGA-CN-4734-01 1 172348185 172348185 G C DNM3 Missense_Mutation p.E641Q 0.25 tolerated(0.22) benign(0.017) TCGA-CN-4734-01 1 173842693 173842693 C A ZBTB37 Missense_Mutation p.P338T 0.17 tolerated(0.21) benign(0.001) TCGA-CN-4734-01 1 179012883 179012883 C T FAM20B 5'UTR 0.20 TCGA-CN-4734-01 1 200014674 200014674 G A NR5A2 Missense_Mutation p.R142H 0.23 deleterious(0) probably_damaging(1) TCGA-CN-4734-01 1 201079386 201079386 G A CACNA1S Missense_Mutation p.T55M 0.32 deleterious(0.03) benign(0.018) TCGA-CN-4734-01 1 203821361 203821361 G A ZC3H11A Missense_Mutation p.R756Q 0.28 tolerated(0.22) benign(0.217) TCGA-CN-4734-01 1 36228069 36228069 G A CLSPN Missense_Mutation p.S253F 0.49 tolerated(0.31) benign(0.046) TCGA-CN-4734-01 1 3703592 3703592 C G LRRC47 Missense_Mutation p.D300H 0.53 deleterious(0.01) benign(0.332) TCGA-CN-4734-01 1 55089015 55089015 G T FAM151A Silent p.G18G 0.54 TCGA-CN-4734-01 20 44515723 44515723 C T SPATA25 Silent p.V39V 0.26 TCGA-CN-4734-01 20 4850573 4850573 G T SLC23A2 Missense_Mutation p.P410H 0.29 deleterious(0) probably_damaging(1) TCGA-CN-4734-01 21 10951321 10951321 G A TPTE Silent p.L131L 0.23 TCGA-CN-4734-01 21 37507579 37507579 C T CBR3 Missense_Mutation p.S30F 0.18 deleterious(0.01) benign(0.191) TCGA-CN-4734-01 21 47350746 47350746 G C PCBP3 Missense_Mutation p.M281I 0.32 tolerated(0.24) benign(0) TCGA-CN-4734-01 21 47969758 47969758 C T DIP2A Missense_Mutation p.S866L 0.23 deleterious(0) benign(0.277) TCGA-CN-4734-01 22 30812008 30812008 C T SEC14L2 Silent p.S281S 0.21 TCGA-CN-4734-01 22 36960638 36960638 C A CACNG2 Silent p.T244T 0.23 TCGA-CN-4734-01 2 14774194 14774194 G A FAM84A Missense_Mutation p.V31I 0.05 tolerated(1) probably_damaging(0.935) TCGA-CN-4734-01 2 152107860 152107860 C T RBM43 Missense_Mutation p.E212K 0.27 tolerated(0.1) benign(0.199) TCGA-CN-4734-01 2 160994250 160994292 CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA - ITGB6 Frame_Shift_Del p.V438Afs*11 0.38 TCGA-CN-4734-01 2 179427722 179427722 C T TTN Missense_Mutation p.E27713K 0.18 TCGA-CN-4734-01 2 183129053 183129053 C G PDE1A Missense_Mutation p.E64Q 0.19 deleterious(0) probably_damaging(0.962) TCGA-CN-4734-01 2 202151270 202151270 C T CASP8 Nonsense_Mutation p.Q524* 0.47 TCGA-CN-4734-01 2 212488710 212488710 C G ERBB4 Missense_Mutation p.L713F 0.25 deleterious(0.05) probably_damaging(0.99) TCGA-CN-4734-01 2 220081144 220081144 C T ABCB6 Nonsense_Mutation p.W304* 0.16 TCGA-CN-4734-01 2 242577093 242577093 G A ATG4B 5'UTR 0.51 TCGA-CN-4734-01 2 24521584 24521584 C A ITSN2 Missense_Mutation p.V482F 0.21 deleterious(0.01) unknown(0) TCGA-CN-4734-01 2 25467435 25467435 G A DNMT3A Silent p.L547L 0.24 TCGA-CN-4734-01 2 27665758 27665758 G T KRTCAP3 Missense_Mutation p.R88L 0.29 tolerated(0.34) benign(0.003) TCGA-CN-4734-01 2 42909708 42909708 C A MTA3 Missense_Mutation p.F290L 0.20 deleterious(0.02) benign(0.159) TCGA-CN-4734-01 2 74688809 74688809 C T MOGS Missense_Mutation p.D703N 0.28 tolerated(0.25) benign(0.062) TCGA-CN-4734-01 2 90139282 90139282 C T IGKV1D-16 Intron 0.19 TCGA-CN-4734-01 2 97526459 97526459 G A SEMA4C Silent p.L802L 0.26 TCGA-CN-4734-01 3 111688638 111688638 A G PHLDB2 Silent p.V1139V 0.23 TCGA-CN-4734-01 3 127298632 127298632 G A TPRA1 Missense_Mutation p.A70V 0.22 tolerated(0.32) possibly_damaging(0.754) TCGA-CN-4734-01 3 18393545 18393545 G A SATB1 Missense_Mutation p.A573V 0.25 deleterious_low_confidence(0.01) benign(0.361) TCGA-CN-4734-01 3 186507747 186507750 ATAT - RFC4 3'UTR 0.51 TCGA-CN-4734-01 3 186965084 186965084 C A MASP1 Intron 0.25 TCGA-CN-4734-01 3 36780207 36780207 C T DCLK3 5'UTR 0.26 TCGA-CN-4734-01 3 48575989 48575993 TGAAG - PFKFB4 Frame_Shift_Del p.F191Efs*4 0.36 TCGA-CN-4734-01 3 53844075 53844075 G A CACNA1D Nonsense_Mutation p.W2001* 0.23 TCGA-CN-4734-01 3 73433477 73433477 G A PDZRN3 Missense_Mutation p.P747L 0.19 tolerated(0.13) possibly_damaging(0.624) TCGA-CN-4734-01 3 9828794 9828794 C T TADA3 Splice_Site p.X236_splice 0.23 TCGA-CN-4734-01 4 119059259 119059259 G T NDST3 Silent p.S425S 0.21 TCGA-CN-4734-01 4 124323279 124323279 A G SPRY1 Missense_Mutation p.K178R 0.28 tolerated(0.53) benign(0.002) TCGA-CN-4734-01 4 169341482 169341482 G A DDX60L Missense_Mutation p.T815M 0.13 tolerated(0.08) benign(0.041) TCGA-CN-4734-01 4 174449870 174449870 G A HAND2 Intron 0.12 TCGA-CN-4734-01 4 185311904 185311904 C G IRF2 Splice_Site p.X232_splice 0.27 TCGA-CN-4734-01 4 2948177 2948177 C G NOP14 Missense_Mutation p.E533Q 0.27 tolerated(0.06) probably_damaging(0.982) TCGA-CN-4734-01 4 36148978 36148979 - T ARAP2 Frame_Shift_Ins p.I1068Nfs*41 0.25 TCGA-CN-4734-01 4 66230776 66230776 T G EPHA5 Missense_Mutation p.D732A 0.21 deleterious(0) benign(0.286) TCGA-CN-4734-01 4 89583679 89583679 C G HERC3 Nonsense_Mutation p.S415* 0.28 TCGA-CN-4734-01 5 134303856 134303856 C T PCBD2 3'UTR 0.22 TCGA-CN-4734-01 5 135290656 135290656 G A LECT2 5'UTR 0.27 TCGA-CN-4734-01 5 137486496 137486496 C G BRD8 Missense_Mutation p.E1020Q 0.24 tolerated_low_confidence(0.16) benign(0) TCGA-CN-4734-01 5 137802445 137802445 G C EGR1 Splice_Site p.X103_splice 0.22 TCGA-CN-4734-01 5 138773229 138773229 C T DNAJC18 Missense_Mutation p.R20K 0.20 tolerated(0.67) benign(0.237) TCGA-CN-4734-01 5 139422206 139422206 C A NRG2 Missense_Mutation p.R150L 0.13 deleterious(0.01) possibly_damaging(0.81) TCGA-CN-4734-01 5 140590604 140590604 G A PCDHB12 Missense_Mutation p.V709M 0.19 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-CN-4734-01 5 147796565 147796565 T G FBXO38 Silent p.A472A 0.27 TCGA-CN-4734-01 5 156895764 156895764 C T NIPAL4 Silent p.Y185Y 0.27 TCGA-CN-4734-01 5 179228838 179228838 C G MGAT4B Missense_Mutation p.E92Q 0.22 deleterious(0.03) benign(0.374) TCGA-CN-4734-01 5 34830955 34830955 C G RAI14 3'Flank 0.18 TCGA-CN-4734-01 5 36986387 36986387 A G NIPBL Silent p.P1035P 0.26 TCGA-CN-4734-01 5 39382739 39382739 C G DAB2 Missense_Mutation p.R441T 0.22 deleterious(0) probably_damaging(0.987) TCGA-CN-4734-01 5 76128686 76128686 T C F2RL1 Missense_Mutation p.V85A 0.24 deleterious(0) probably_damaging(0.961) TCGA-CN-4734-01 5 79743947 79743947 C G ZFYVE16 Missense_Mutation p.Q943E 0.22 tolerated(1) benign(0.003) TCGA-CN-4734-01 5 80422959 80422959 C A RASGRF2 Missense_Mutation p.A888E 0.18 deleterious(0.02) possibly_damaging(0.786) TCGA-CN-4734-01 5 96136692 96136692 G A ERAP1 Missense_Mutation p.S179L 0.19 tolerated(0.08) possibly_damaging(0.598) TCGA-CN-4734-01 6 128150927 128150927 G T THEMIS Missense_Mutation p.Q135K 0.26 tolerated(0.96) benign(0.002) TCGA-CN-4734-01 6 159421027 159421027 A C RSPH3 5'UTR 0.20 TCGA-CN-4734-01 6 22294711 22294711 C T PRL Missense_Mutation p.R44Q 0.27 tolerated(0.63) benign(0.038) TCGA-CN-4734-01 6 26156774 26156774 G A HIST1H1E Silent p.K52K 0.11 TCGA-CN-4734-01 6 56443679 56443679 C T DST Silent p.T1697T 0.23 TCGA-CN-4734-01 6 70098604 70098604 G A BAI3 Missense_Mutation p.A1464T 0.23 tolerated(1) benign(0) TCGA-CN-4734-01 6 74228304 74228304 C G EEF1A1 Missense_Mutation p.E268Q 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CN-4734-01 6 87964636 87964636 G A ZNF292 Missense_Mutation p.C430Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-4734-01 7 107752256 107752256 C A LAMB4 Missense_Mutation p.G110C 0.31 deleterious(0) probably_damaging(0.999) TCGA-CN-4734-01 7 122033249 122033249 C T CADPS2 Splice_Site p.X1003_splice 0.23 TCGA-CN-4734-01 7 21469033 21469033 C T SP4 Nonsense_Mutation p.Q84* 0.30 TCGA-CN-4734-01 7 2265120 2265120 C T MAD1L1 Missense_Mutation p.M72I 0.29 tolerated(0.21) benign(0.013) TCGA-CN-4734-01 7 23825188 23825188 G A STK31 Missense_Mutation p.R747H 0.24 deleterious(0) benign(0.381) TCGA-CN-4734-01 7 44185251 44185251 G A GCK Silent p.I367I 0.21 TCGA-CN-4734-01 7 44924866 44924866 C A PURB Nonsense_Mutation p.E28* 0.22 TCGA-CN-4734-01 7 48148044 48148044 C G UPP1 3'UTR 0.29 TCGA-CN-4734-01 7 7283416 7283416 C T C1GALT1 3'UTR 0.28 TCGA-CN-4734-01 7 87459257 87459257 G C RUNDC3B Missense_Mutation p.S445T 0.26 deleterious(0) probably_damaging(0.925) TCGA-CN-4734-01 7 99917323 99917323 G A SPDYE3 Silent p.P494P 0.23 TCGA-CN-4734-01 8 10480315 10480315 C T RP1L1 Missense_Mutation p.E133K 0.39 benign(0.391) TCGA-CN-4734-01 8 108913336 108913336 G T RSPO2 Missense_Mutation p.S233R 0.12 tolerated(0.06) probably_damaging(0.995) TCGA-CN-4734-01 8 12957760 12957760 C T DLC1 Missense_Mutation p.G696R 0.44 deleterious(0.04) possibly_damaging(0.751) TCGA-CN-4734-01 8 133144493 133144493 G C KCNQ3 Silent p.A606A 0.43 TCGA-CN-4734-01 8 133978843 133978843 C A TG Missense_Mutation p.Q1863K 0.19 tolerated(0.12) benign(0.004) TCGA-CN-4734-01 8 143956467 143956467 C T CYP11B1 Missense_Mutation p.G435D 0.35 tolerated(0.6) benign(0.355) TCGA-CN-4734-01 8 144991583 144991583 C T PLEC Missense_Mutation p.V4273M 0.19 probably_damaging(0.999) TCGA-CN-4734-01 8 27145246 27145246 C T TRIM35 Missense_Mutation p.E435K 0.31 deleterious(0.02) possibly_damaging(0.612) TCGA-CN-4734-01 9 124906446 124906446 C T NDUFA8 3'UTR 0.18 TCGA-CN-4734-01 9 126143700 126143700 C A DENND1A 3'UTR 0.21 TCGA-CN-4734-01 9 137591821 137591821 T C COL5A1 Missense_Mutation p.F115S 0.24 probably_damaging(0.999) TCGA-CN-4734-01 9 139701274 139701274 C T CCDC183 Silent p.L448L 0.15 TCGA-CN-4734-01 9 21216761 21216761 G T IFNA16 Missense_Mutation p.Q182K 0.30 tolerated(0.06) benign(0.006) TCGA-CN-4734-01 9 22451198 22451198 C G DMRTA1 Nonsense_Mutation p.S268* 0.36 TCGA-CN-4734-01 9 22451226 22451226 C G DMRTA1 Missense_Mutation p.I277M 0.36 tolerated(0.08) benign(0.186) TCGA-CN-4734-01 9 35825248 35825248 C T FAM221B Missense_Mutation p.A241T 0.41 tolerated(0.15) benign(0.247) TCGA-CN-4734-01 9 39118179 39118179 G C CNTNAP3 Missense_Mutation p.Q720E 0.11 deleterious(0.02) benign(0.146) TCGA-CN-4734-01 9 5763752 5763752 G A KIAA1432 Missense_Mutation p.E909K 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-4734-01 X 117033238 117033238 C A KLHL13 Missense_Mutation p.G537V 0.48 deleterious(0.03) probably_damaging(0.931) TCGA-CN-4734-01 X 39930340 39930340 C T BCOR Missense_Mutation p.E1042K 0.55 tolerated(0.09) probably_damaging(0.993) TCGA-CN-4735-01 10 102114253 102114253 C A SCD Missense_Mutation p.H171N 0.30 deleterious(0) probably_damaging(1) TCGA-CN-4735-01 10 103432746 103432746 G A FBXW4 Missense_Mutation p.H201Y 0.36 deleterious(0) probably_damaging(0.958) TCGA-CN-4735-01 10 117704253 117704253 G T ATRNL1 Missense_Mutation p.R1368L 0.32 tolerated(0.18) probably_damaging(0.997) TCGA-CN-4735-01 10 46322371 46322371 G A AGAP4 Silent p.A328A 0.26 TCGA-CN-4735-01 10 72324152 72324152 G A PALD1 Silent p.R765R 0.18 TCGA-CN-4735-01 10 91203593 91203605 TCCACAAAAAAAA - SLC16A12 Frame_Shift_Del p.I71Sfs*20 0.28 TCGA-CN-4735-01 11 124789685 124789685 T A HEPN1 Missense_Mutation p.D13E 0.51 tolerated_low_confidence(0.13) benign(0.008) TCGA-CN-4735-01 11 1858221 1858221 G A SYT8 Silent p.Q289Q 0.08 TCGA-CN-4735-01 11 2335794 2335794 C T TSPAN32 Missense_Mutation p.A179V 0.56 deleterious(0.04) possibly_damaging(0.73) TCGA-CN-4735-01 11 30032952 30032952 T A KCNA4 Missense_Mutation p.Q425L 0.57 deleterious(0.01) possibly_damaging(0.908) TCGA-CN-4735-01 11 55340373 55340373 C A OR4C16 Missense_Mutation p.T257K 0.32 deleterious(0) probably_damaging(1) TCGA-CN-4735-01 11 56344940 56344940 G A OR5M10 Silent p.L86L 0.33 TCGA-CN-4735-01 11 65383829 65383829 C T PCNXL3 Missense_Mutation p.S16L 0.43 deleterious(0) possibly_damaging(0.602) TCGA-CN-4735-01 11 67395614 67395614 G T NUDT8 Missense_Mutation p.L172M 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-CN-4735-01 11 67395615 67395615 G A NUDT8 Silent p.F171F 0.18 TCGA-CN-4735-01 11 71906662 71906662 C T FOLR1 Nonsense_Mutation p.Q122* 0.12 TCGA-CN-4735-01 11 73021005 73021005 G A ARHGEF17 Missense_Mutation p.G441D 0.55 deleterious_low_confidence(0.05) benign(0.005) TCGA-CN-4735-01 11 88911535 88911535 C T TYR Silent p.L138L 0.08 TCGA-CN-4735-01 12 130184678 130184678 G A TMEM132D Silent p.S215S 0.34 TCGA-CN-4735-01 12 133732286 133732286 T G ZNF10 Missense_Mutation p.F152V 0.40 tolerated(0.17) benign(0.027) TCGA-CN-4735-01 12 14577111 14577111 T C ATF7IP Missense_Mutation p.W88R 0.32 tolerated_low_confidence(0.19) probably_damaging(0.983) TCGA-CN-4735-01 12 2595407 2595407 T C CACNA1C Missense_Mutation p.Y299H 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-CN-4735-01 12 49445126 49445126 G T KMT2D Nonsense_Mutation p.C780* 0.43 TCGA-CN-4735-01 12 54396297 54396297 G A HOXC9 Missense_Mutation p.E208K 0.33 deleterious(0) probably_damaging(0.989) TCGA-CN-4735-01 12 57648863 57648863 G A R3HDM2 Missense_Mutation p.P875L 0.35 deleterious(0) possibly_damaging(0.776) TCGA-CN-4735-01 12 58018675 58018675 C A SLC26A10 Silent p.I418I 0.32 TCGA-CN-4735-01 12 8689784 8689784 G A CLEC4E Missense_Mutation p.S100F 0.38 deleterious(0) possibly_damaging(0.748) TCGA-CN-4735-01 14 100743982 100743982 G T YY1 3'UTR 0.82 TCGA-CN-4735-01 14 19553843 19553843 C T POTEG Missense_Mutation p.L143F 0.10 deleterious(0.02) probably_damaging(0.919) TCGA-CN-4735-01 14 24808260 24808260 C T RIPK3 Silent p.K144K 0.46 TCGA-CN-4735-01 14 39716525 39716525 C T MIA2 Silent p.S249S 0.65 TCGA-CN-4735-01 14 52781581 52781581 G A PTGER2 Silent p.E105E 0.29 TCGA-CN-4735-01 14 73959252 73959252 C T HEATR4 Intron 0.72 TCGA-CN-4735-01 14 92357640 92357640 C T FBLN5 Missense_Mutation p.A182T 0.73 deleterious(0.01) possibly_damaging(0.837) TCGA-CN-4735-01 14 94744992 94744992 G C PPP4R4 3'UTR 0.28 TCGA-CN-4735-01 15 33359987 33359987 G A FMN1 Silent p.F33F 0.37 TCGA-CN-4735-01 15 39876366 39876366 T C THBS1 Missense_Mutation p.L294P 0.35 deleterious(0) probably_damaging(0.971) TCGA-CN-4735-01 15 52339091 52339091 C G MAPK6 Missense_Mutation p.S145C 0.42 deleterious(0) probably_damaging(0.998) TCGA-CN-4735-01 16 14334419 14334419 G A MKL2 Intron 0.26 TCGA-CN-4735-01 16 2376444 2376444 C T ABCA3 Silent p.A8A 0.28 TCGA-CN-4735-01 16 27802654 27802654 G A GSG1L 3'UTR 0.39 TCGA-CN-4735-01 16 30545603 30545603 G C AC002310.13 Missense_Mutation p.I75M 0.36 deleterious(0) probably_damaging(0.998) TCGA-CN-4735-01 16 34712201 34712201 G A RP11-80F22.9 RNA 0.35 TCGA-CN-4735-01 16 52497888 52497888 G A TOX3 Silent p.L122L 0.33 TCGA-CN-4735-01 16 56693151 56693151 G A MT1F 3'UTR 0.47 TCGA-CN-4735-01 16 70913521 70913521 C G HYDIN Missense_Mutation p.D3452H 0.16 probably_damaging(0.979) TCGA-CN-4735-01 16 780407 780407 C T NARFL 3'UTR 0.34 TCGA-CN-4735-01 16 88968004 88968004 G A CBFA2T3 Missense_Mutation p.T71M 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.87) TCGA-CN-4735-01 16 90162030 90162030 G A TUBB8P7 RNA 0.41 TCGA-CN-4735-01 17 27493807 27493807 G A MYO18A Missense_Mutation p.S51F 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.519) TCGA-CN-4735-01 17 36064935 36064935 G C HNF1B Missense_Mutation p.A443G 0.28 deleterious(0) probably_damaging(0.999) TCGA-CN-4735-01 17 39522833 39522833 G A KRT33B Silent p.I159I 0.33 TCGA-CN-4735-01 17 42018893 42018893 C T PPY Missense_Mutation p.E44K 0.29 deleterious(0) probably_damaging(0.972) TCGA-CN-4735-01 17 43592113 43592113 C T LRRC37A4P RNA 0.07 TCGA-CN-4735-01 17 5462648 5462648 G A NLRP1 Silent p.I456I 0.25 TCGA-CN-4735-01 17 62034533 62034533 C T SCN4A Missense_Mutation p.G789S 0.29 deleterious(0) probably_damaging(1) TCGA-CN-4735-01 17 73915956 73915956 C T FBF1 Splice_Site p.X629_splice 0.38 TCGA-CN-4735-01 17 74465350 74465350 G A AANAT Missense_Mutation p.E132K 0.33 tolerated(0.07) probably_damaging(0.967) TCGA-CN-4735-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.43 deleterious(0) probably_damaging(0.997) TCGA-CN-4735-01 17 76167595 76167595 C T SYNGR2 Silent p.L114L 0.33 TCGA-CN-4735-01 18 12453101 12453101 A G SPIRE1 Missense_Mutation p.F605L 0.04 deleterious(0.02) probably_damaging(0.992) TCGA-CN-4735-01 18 70461640 70461640 C G NETO1 Splice_Site p.X157_splice 0.56 TCGA-CN-4735-01 18 71797839 71797839 C T FBXO15 Nonsense_Mutation p.W129* 0.09 TCGA-CN-4735-01 19 11283762 11283762 G A KANK2 Silent p.Y710Y 0.42 TCGA-CN-4735-01 19 12976159 12976159 C T MAST1 Silent p.P556P 0.46 TCGA-CN-4735-01 19 20003119 20003119 C T ZNF253 Missense_Mutation p.L355F 0.46 deleterious(0.03) probably_damaging(0.985) TCGA-CN-4735-01 19 21300358 21300358 C T ZNF714 Silent p.F296F 0.15 TCGA-CN-4735-01 19 22170088 22170088 C T ZNF208 Silent p.L52L 0.27 TCGA-CN-4735-01 19 45528913 45528913 C T RELB Silent p.I268I 0.40 TCGA-CN-4735-01 19 4817884 4817884 G T TICAM1 Nonsense_Mutation p.S169* 0.04 TCGA-CN-4735-01 19 49398650 49398650 C T TULP2 Missense_Mutation p.G108S 0.38 tolerated(0.11) benign(0.022) TCGA-CN-4735-01 19 51742808 51742808 T A CD33 Silent p.T320T 0.36 TCGA-CN-4735-01 19 52856995 52856995 G C ZNF610 Missense_Mutation p.D42H 0.37 deleterious(0) benign(0.042) TCGA-CN-4735-01 19 52887510 52887510 A T ZNF880 Missense_Mutation p.N226I 0.23 tolerated(0.24) benign(0.437) TCGA-CN-4735-01 19 54692109 54692109 G C MBOAT7 Silent p.T56T 0.39 TCGA-CN-4735-01 19 55021844 55021844 G A LAIR2 3'UTR 0.16 TCGA-CN-4735-01 19 55805389 55805389 A G BRSK1 Missense_Mutation p.R155G 0.32 deleterious(0.03) possibly_damaging(0.468) TCGA-CN-4735-01 1 109778722 109778722 G T SARS Missense_Mutation p.V365F 0.42 deleterious(0) probably_damaging(0.999) TCGA-CN-4735-01 1 112031598 112031598 G A ADORA3 Missense_Mutation p.T169M 0.28 deleterious_low_confidence(0.02) benign(0.088) TCGA-CN-4735-01 1 115489931 115489931 G A SYCP1 Missense_Mutation p.R771K 0.27 tolerated(0.93) benign(0.023) TCGA-CN-4735-01 1 118567969 118567969 C A SPAG17 Missense_Mutation p.K1267N 0.31 tolerated(0.13) possibly_damaging(0.511) TCGA-CN-4735-01 1 149879361 149879361 T C SV2A Silent p.S523S 0.20 TCGA-CN-4735-01 1 150484939 150484939 C T ECM1 Missense_Mutation p.R426W 0.25 deleterious(0.02) benign(0.139) TCGA-CN-4735-01 1 150940906 150940906 G A CERS2 Missense_Mutation p.H86Y 0.31 deleterious(0.02) benign(0.049) TCGA-CN-4735-01 1 158436255 158436255 C G OR10K1 Missense_Mutation p.R302G 0.25 deleterious(0.04) benign(0.079) TCGA-CN-4735-01 1 196712640 196712640 G A CFH Missense_Mutation p.M1064I 0.26 tolerated(0.35) benign(0.024) TCGA-CN-4735-01 1 198721488 198721488 G A PTPRC Silent p.L1106L 0.12 TCGA-CN-4735-01 1 21808093 21808093 C A NBPF3 Silent p.L479L 0.28 TCGA-CN-4735-01 1 22313044 22313044 C T CELA3B Silent p.L221L 0.07 TCGA-CN-4735-01 1 23688794 23688794 G A ZNF436 Missense_Mutation p.P361S 0.39 deleterious(0.03) possibly_damaging(0.787) TCGA-CN-4735-01 1 23688795 23688795 C A ZNF436 Missense_Mutation p.K360N 0.39 deleterious(0.04) possibly_damaging(0.758) TCGA-CN-4735-01 1 24766687 24766687 C T NIPAL3 Missense_Mutation p.A40V 0.28 deleterious(0) probably_damaging(0.993) TCGA-CN-4735-01 1 40214724 40214724 G A PPIE Missense_Mutation p.D220N 0.35 tolerated(0.12) probably_damaging(0.998) TCGA-CN-4735-01 1 44069435 44069435 G A PTPRF Missense_Mutation p.G871D 0.29 tolerated(0.59) benign(0.41) TCGA-CN-4735-01 1 46500768 46500768 G T MAST2 Missense_Mutation p.R1476L 0.34 deleterious_low_confidence(0) benign(0.296) TCGA-CN-4735-01 1 59042274 59042274 C A TACSTD2 Silent p.R185R 0.08 TCGA-CN-4735-01 1 59147716 59147716 C T MYSM1 Missense_Mutation p.D334N 0.32 tolerated(0.27) benign(0.001) TCGA-CN-4735-01 1 65117854 65117854 G A CACHD1 Missense_Mutation p.M416I 0.29 tolerated(0.25) benign(0.103) TCGA-CN-4735-01 1 70385325 70385325 A G LRRC7 Intron 0.58 TCGA-CN-4735-01 1 79356726 79356726 T C ELTD1 3'UTR 0.35 TCGA-CN-4735-01 1 8421855 8421855 C T RERE Missense_Mutation p.D662N 0.30 probably_damaging(0.911) TCGA-CN-4735-01 1 9101976 9101976 G C SLC2A5 Missense_Mutation p.P147A 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-CN-4735-01 20 2443871 2443871 C T SNRPB Silent p.V141V 0.10 TCGA-CN-4735-01 20 30436092 30436092 T A FOXS1 5'Flank 0.24 TCGA-CN-4735-01 20 3297377 3297377 G A C20orf194 Missense_Mutation p.S511F 0.34 deleterious(0) benign(0.104) TCGA-CN-4735-01 20 37400305 37400305 A T ACTR5 Missense_Mutation p.Y557F 0.40 deleterious(0) probably_damaging(0.999) TCGA-CN-4735-01 20 377164 377164 C A TRIB3 Silent p.R303R 0.35 TCGA-CN-4735-01 20 44581344 44581344 C T ZNF335 Missense_Mutation p.E903K 0.31 deleterious(0.01) possibly_damaging(0.647) TCGA-CN-4735-01 20 44756820 44756820 C G CD40 Missense_Mutation p.I201M 0.31 tolerated(0.07) benign(0.005) TCGA-CN-4735-01 20 61143686 61143686 C T C20orf166 5'Flank 0.31 TCGA-CN-4735-01 21 19651350 19651350 C T TMPRSS15 Missense_Mutation p.E899K 0.33 deleterious(0.03) benign(0.37) TCGA-CN-4735-01 21 30248703 30248704 - A N6AMT1 3'UTR 0.24 TCGA-CN-4735-01 21 35166729 35166729 C G ITSN1 Missense_Mutation p.R637G 0.35 deleterious(0.03) possibly_damaging(0.719) TCGA-CN-4735-01 21 40778524 40778524 C T LCA5L Missense_Mutation p.E433K 0.31 tolerated(0.49) benign(0.035) TCGA-CN-4735-01 21 47851584 47851584 G T PCNT Nonsense_Mutation p.E2736* 0.26 TCGA-CN-4735-01 21 47852115 47852115 G C PCNT Missense_Mutation p.D2913H 0.46 probably_damaging(0.953) TCGA-CN-4735-01 22 18364059 18364059 T C MICAL3 Intron 0.37 TCGA-CN-4735-01 22 19121694 19121694 A G DGCR14 3'UTR 0.27 TCGA-CN-4735-01 22 22786533 22786533 C T IGLV1-36 Missense_Mutation p.S28L 0.33 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-CN-4735-01 22 40697290 40697290 G A TNRC6B Missense_Mutation p.G1358E 0.42 deleterious(0) probably_damaging(0.99) TCGA-CN-4735-01 22 42610152 42610152 G A TCF20 Missense_Mutation p.S387F 0.31 probably_damaging(0.998) TCGA-CN-4735-01 2 135745305 135745305 G A MAP3K19 Silent p.N379N 0.36 TCGA-CN-4735-01 2 141072662 141072662 G T LRP1B Nonsense_Mutation p.S4216* 0.28 TCGA-CN-4735-01 2 182468677 182468677 A T CERKL Missense_Mutation p.F123Y 0.15 tolerated(0.2) probably_damaging(0.999) TCGA-CN-4735-01 2 187626381 187626381 C T FAM171B Nonsense_Mutation p.Q438* 0.30 TCGA-CN-4735-01 2 198570720 198570720 C G MARS2 Silent p.L197L 0.33 TCGA-CN-4735-01 2 220404983 220404983 G A CHPF Nonsense_Mutation p.R484* 0.27 TCGA-CN-4735-01 2 25186283 25186283 G T DNAJC27 Missense_Mutation p.F77L 0.30 tolerated(0.68) benign(0.001) TCGA-CN-4735-01 2 27887203 27887203 C G SLC4A1AP Missense_Mutation p.S195C 0.38 deleterious(0) possibly_damaging(0.563) TCGA-CN-4735-01 2 54080671 54080671 C T GPR75 Missense_Mutation p.R408Q 0.33 tolerated(0.13) benign(0.147) TCGA-CN-4735-01 2 56419779 56419779 G A CCDC85A Silent p.L148L 0.42 TCGA-CN-4735-01 2 65473816 65473816 A T ACTR2 Missense_Mutation p.K111N 0.31 tolerated(0.07) possibly_damaging(0.875) TCGA-CN-4735-01 2 68765290 68765290 C T APLF Missense_Mutation p.S364L 0.40 tolerated(0.07) benign(0.02) TCGA-CN-4735-01 2 72945308 72945308 G A EXOC6B Missense_Mutation p.S198F 0.35 deleterious(0) possibly_damaging(0.794) TCGA-CN-4735-01 3 121100262 121100262 A G STXBP5L Missense_Mutation p.T848A 0.30 tolerated(0.67) benign(0.005) TCGA-CN-4735-01 3 130732845 130732845 G T ASTE1 3'UTR 0.21 TCGA-CN-4735-01 3 151148153 151148153 C G MED12L Missense_Mutation p.Q2124E 0.25 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-CN-4735-01 3 152554038 152554038 C T P2RY1 Missense_Mutation p.P156L 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-CN-4735-01 3 152554042 152554042 C T P2RY1 Silent p.L157L 0.18 TCGA-CN-4735-01 3 183225976 183225976 G A KLHL6 Silent p.N260N 0.29 TCGA-CN-4735-01 3 197751526 197751526 C T LMLN Intron 0.26 TCGA-CN-4735-01 3 20025262 20025262 G A RAB5A Missense_Mutation p.V199I 0.32 tolerated(0.23) benign(0.033) TCGA-CN-4735-01 3 33481236 33481236 G A UBP1 Silent p.Y35Y 0.53 TCGA-CN-4735-01 3 57543358 57543358 C G PDE12 Missense_Mutation p.L418V 0.55 tolerated(0.64) benign(0.011) TCGA-CN-4735-01 3 7188164 7188164 C T GRM7 Missense_Mutation p.T182M 0.53 deleterious(0) probably_damaging(0.999) TCGA-CN-4735-01 4 104068527 104068527 C T CENPE Missense_Mutation p.E1374K 0.06 benign(0.004) TCGA-CN-4735-01 4 13602595 13602595 C G BOD1L1 Missense_Mutation p.G1977R 0.47 benign(0.048) TCGA-CN-4735-01 4 57785989 57785989 C G REST Nonsense_Mutation p.S312* 0.45 TCGA-CN-4735-01 5 131630361 131630361 C G SLC22A4 Missense_Mutation p.Q18E 0.28 deleterious(0.01) probably_damaging(0.936) TCGA-CN-4735-01 5 131630460 131630460 C G SLC22A4 Missense_Mutation p.R51G 0.35 tolerated(0.32) benign(0.217) TCGA-CN-4735-01 5 140481978 140481978 C T PCDHB3 Missense_Mutation p.P582L 0.34 deleterious_low_confidence(0) benign(0.223) TCGA-CN-4735-01 5 15928296 15928296 G A FBXL7 Missense_Mutation p.R142H 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-CN-4735-01 5 1879734 1879734 G T IRX4 Missense_Mutation p.T207K 0.32 deleterious(0) probably_damaging(0.999) TCGA-CN-4735-01 5 24509693 24509693 G C CDH10 Missense_Mutation p.S413C 0.38 deleterious(0.02) possibly_damaging(0.557) TCGA-CN-4735-01 5 44813211 44813211 C T MRPS30 Missense_Mutation p.S286L 0.13 deleterious(0.05) possibly_damaging(0.828) TCGA-CN-4735-01 5 59284492 59284492 C T PDE4D Missense_Mutation p.G32E 0.30 deleterious_low_confidence(0.02) benign(0.001) TCGA-CN-4735-01 5 75621244 75621244 A C SV2C Missense_Mutation p.N686H 0.36 deleterious(0.03) probably_damaging(1) TCGA-CN-4735-01 5 7802384 7802384 G A ADCY2 Silent p.P894P 0.38 TCGA-CN-4735-01 6 125404058 125404058 G A RNF217 3'UTR 0.35 TCGA-CN-4735-01 6 165693394 165693394 G A C6orf118 3'UTR 0.31 TCGA-CN-4735-01 6 4069240 4069240 G C FAM217A Missense_Mutation p.S406C 0.59 deleterious(0.03) benign(0.033) TCGA-CN-4735-01 7 102743965 102743965 G C NAPEPLD Missense_Mutation p.L365V 0.20 tolerated(0.14) benign(0.067) TCGA-CN-4735-01 7 102953456 102953456 A G DNAJC2 Missense_Mutation p.W577R 0.18 deleterious(0) probably_damaging(1) TCGA-CN-4735-01 7 102988177 102988177 G T PSMC2 Missense_Mutation p.A7S 0.11 tolerated_low_confidence(0.76) benign(0) TCGA-CN-4735-01 7 102988178 102988178 C T PSMC2 Missense_Mutation p.A7V 0.11 tolerated_low_confidence(0.29) benign(0.013) TCGA-CN-4735-01 7 62752699 62752699 G T ZNF733P RNA 0.18 TCGA-CN-4735-01 7 82582957 82582957 G A PCLO Missense_Mutation p.L2438F 0.54 unknown(0) TCGA-CN-4735-01 7 99757768 99757768 T C GAL3ST4 Missense_Mutation p.D415G 0.17 deleterious(0.01) probably_damaging(0.953) TCGA-CN-4735-01 8 113267588 113267588 A G CSMD3 Missense_Mutation p.S3311P 0.35 deleterious(0.01) probably_damaging(0.917) TCGA-CN-4735-01 8 144812752 144812752 T C FAM83H Translation_Start_Site p.M1? 0.32 deleterious(0) probably_damaging(0.977) TCGA-CN-4735-01 8 27737157 27737157 C T SCARA5 Missense_Mutation p.G427E 0.33 deleterious(0) probably_damaging(0.995) TCGA-CN-4735-01 8 77765509 77765509 G A ZFHX4 Missense_Mutation p.G2118R 0.35 probably_damaging(0.998) TCGA-CN-4735-01 8 8748457 8748457 G A MFHAS1 Silent p.L704L 0.37 TCGA-CN-4735-01 8 8748738 8748738 G C MFHAS1 Missense_Mutation p.Q611E 0.34 deleterious(0.01) benign(0.341) TCGA-CN-4735-01 9 134350562 134350562 G A PRRC2B Missense_Mutation p.E1016K 0.62 tolerated(0.29) benign(0.426) TCGA-CN-4735-01 9 138825301 138825301 G A UBAC1 Missense_Mutation p.T388M 0.58 deleterious(0) probably_damaging(0.96) TCGA-CN-4735-01 9 140708936 140708936 C T EHMT1 Silent p.L1078L 0.57 TCGA-CN-4735-01 9 2097460 2097460 C A SMARCA2 Missense_Mutation p.Q1023K 0.57 benign(0) TCGA-CN-4735-01 9 74300073 74300073 C T TMEM2 3'UTR 0.11 TCGA-CN-4735-01 X 101972406 101972406 T G GPRASP2 3'UTR 0.75 TCGA-CN-4735-01 X 37028587 37028587 C T FAM47C Missense_Mutation p.L702F 0.63 deleterious(0.03) probably_damaging(0.983) TCGA-CN-4735-01 X 44703874 44703874 G T DUSP21 Missense_Mutation p.V166L 0.66 tolerated(0.08) benign(0.213) TCGA-CN-4735-01 X 5821254 5821254 G T NLGN4X Missense_Mutation p.H489N 0.78 deleterious(0.03) probably_damaging(0.993) TCGA-CN-4735-01 X 79281105 79281105 C T TBX22 Silent p.Y154Y 0.51 TCGA-CN-4735-01 X 90690655 90690655 C A PABPC5 Missense_Mutation p.P27T 0.74 tolerated(0.05) benign(0.056) TCGA-CN-4735-01 X 90690656 90690656 C A PABPC5 Missense_Mutation p.P27Q 0.74 tolerated(0.07) possibly_damaging(0.657) TCGA-CN-4736-01 10 21959517 21959517 G C MLLT10 Missense_Mutation p.G312A 0.12 tolerated(0.79) benign(0.004) TCGA-CN-4736-01 11 114569215 114569215 T A NXPE2 Missense_Mutation p.I194N 0.10 deleterious(0) probably_damaging(0.961) TCGA-CN-4736-01 11 19252273 19252273 G A E2F8 Missense_Mutation p.T392I 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-CN-4736-01 11 5142407 5142407 C A OR52A4 RNA 0.17 TCGA-CN-4736-01 11 56380079 56380079 G A OR5M1 Silent p.A300A 0.16 TCGA-CN-4736-01 11 58189994 58189994 G T OR5B2 Silent p.S247S 0.16 TCGA-CN-4736-01 12 125270878 125270878 G A SCARB1 Intron 0.16 TCGA-CN-4736-01 12 14659876 14659876 G A PLBD1 Nonsense_Mutation p.R455* 0.17 TCGA-CN-4736-01 12 1889793 1889793 C T ADIPOR2 Missense_Mutation p.L214F 0.17 tolerated(0.11) benign(0.101) TCGA-CN-4736-01 12 3788183 3788183 T A EFCAB4B Missense_Mutation p.Y141F 0.12 tolerated(0.18) probably_damaging(0.979) TCGA-CN-4736-01 12 54891638 54891638 G T NCKAP1L Missense_Mutation p.G22V 0.08 deleterious(0) probably_damaging(0.993) TCGA-CN-4736-01 12 62954394 62954394 C A MON2 Missense_Mutation p.P1178H 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-CN-4736-01 12 71531971 71531971 C A TSPAN8 Missense_Mutation p.A101S 0.16 tolerated(0.07) possibly_damaging(0.606) TCGA-CN-4736-01 12 971429 971429 C T WNK1 Missense_Mutation p.S711L 0.23 deleterious(0.01) unknown(0) TCGA-CN-4736-01 13 109777522 109777522 G A MYO16 Missense_Mutation p.V1178M 0.40 deleterious(0.02) possibly_damaging(0.635) TCGA-CN-4736-01 13 20000607 20000607 A G TPTE2 Silent p.G451G 0.22 TCGA-CN-4736-01 13 46725072 46725072 T C LCP1 Missense_Mutation p.K294R 0.35 tolerated(0.07) benign(0.149) TCGA-CN-4736-01 14 101349254 101349254 T A RTL1 Missense_Mutation p.Q624H 0.17 deleterious(0.02) possibly_damaging(0.87) TCGA-CN-4736-01 14 74512762 74512762 G T CCDC176 Splice_Site p.X193_splice 0.18 TCGA-CN-4736-01 14 77492316 77492316 G A IRF2BPL Missense_Mutation p.S607F 0.19 deleterious(0) unknown(0) TCGA-CN-4736-01 14 94413768 94413768 C T ASB2 Missense_Mutation p.G327S 0.20 tolerated(0.1) probably_damaging(0.946) TCGA-CN-4736-01 15 25981206 25981206 C T ATP10A Missense_Mutation p.C246Y 0.14 tolerated(1) benign(0.002) TCGA-CN-4736-01 15 35274909 35274909 C T ZNF770 Missense_Mutation p.A243T 0.29 tolerated(1) benign(0.001) TCGA-CN-4736-01 15 74005353 74005353 A T CD276 3'UTR 0.16 TCGA-CN-4736-01 16 20432686 20432686 C A ACSM5 Missense_Mutation p.Q244K 0.16 deleterious(0.02) benign(0.091) TCGA-CN-4736-01 16 24921693 24921693 G A SLC5A11 Missense_Mutation p.A573T 0.16 tolerated(0.69) benign(0.001) TCGA-CN-4736-01 16 3817904 3817904 C T CREBBP Missense_Mutation p.E1023K 0.14 unknown(0) TCGA-CN-4736-01 16 68289188 68289188 C T PLA2G15 Missense_Mutation p.S136F 0.20 tolerated(0.12) possibly_damaging(0.776) TCGA-CN-4736-01 16 72057436 72057436 G A DHODH Missense_Mutation p.R346Q 0.19 tolerated(0.1) benign(0.042) TCGA-CN-4736-01 16 84328674 84328674 A T WFDC1 Missense_Mutation p.N33Y 0.17 deleterious(0.01) possibly_damaging(0.656) TCGA-CN-4736-01 17 10351237 10351237 C T MYH4 Silent p.K1621K 0.03 TCGA-CN-4736-01 17 12639605 12639605 C T MYOCD Silent p.D181D 0.15 TCGA-CN-4736-01 17 43923368 43923368 C T SPPL2C Missense_Mutation p.R366C 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-CN-4736-01 17 48699100 48699100 A T CACNA1G Missense_Mutation p.D2002V 0.07 deleterious(0) probably_damaging(0.986) TCGA-CN-4736-01 17 56166691 56166691 G T DYNLL2 3'UTR 0.10 TCGA-CN-4736-01 17 62533733 62533733 G T CEP95 Missense_Mutation p.V768L 0.14 tolerated(0.17) benign(0.119) TCGA-CN-4736-01 17 62750129 62750129 G C hsa-mir-6080 RNA 0.17 TCGA-CN-4736-01 17 7578271 7578271 T G TP53 Missense_Mutation p.H193P 0.13 deleterious(0) probably_damaging(1) TCGA-CN-4736-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.20 deleterious(0) probably_damaging(1) TCGA-CN-4736-01 17 8638565 8638565 C T CCDC42 Missense_Mutation p.R241H 0.08 tolerated(0.44) probably_damaging(0.994) TCGA-CN-4736-01 18 24496367 24496367 C G CHST9 Missense_Mutation p.K396N 0.22 deleterious(0) probably_damaging(1) TCGA-CN-4736-01 18 3880018 3880018 G A DLGAP1 Silent p.D17D 0.33 TCGA-CN-4736-01 18 56963955 56963955 G A CPLX4 Missense_Mutation p.A153V 0.19 tolerated(0.05) probably_damaging(0.994) TCGA-CN-4736-01 19 16038133 16038133 C A CYP4F11 Silent p.L138L 0.17 TCGA-CN-4736-01 19 31768676 31768676 G A TSHZ3 Missense_Mutation p.R675W 0.20 deleterious(0.01) benign(0.386) TCGA-CN-4736-01 19 54613495 54613495 G A TFPT Missense_Mutation p.R98W 0.24 deleterious(0.01) possibly_damaging(0.781) TCGA-CN-4736-01 19 9056421 9056421 G A MUC16 Missense_Mutation p.S10342F 0.29 benign(0.293) TCGA-CN-4736-01 1 149902780 149902780 C T MTMR11 Silent p.E456E 0.04 TCGA-CN-4736-01 1 152081483 152081495 GCTCCTGGCAGCG - TCHH Frame_Shift_Del p.R1400Afs*20 0.21 TCGA-CN-4736-01 1 158670019 158670019 G T OR6K2 Missense_Mutation p.Q142K 0.12 tolerated(0.54) benign(0.12) TCGA-CN-4736-01 1 161011574 161011574 C T USF1 Silent p.E113E 0.17 TCGA-CN-4736-01 1 204085665 204085665 T C SOX13 Missense_Mutation p.L150P 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-CN-4736-01 1 215802185 215802185 C T USH2A Missense_Mutation p.E5164K 0.08 benign(0.128) TCGA-CN-4736-01 1 38184465 38184465 C T EPHA10 Missense_Mutation p.R927H 0.23 tolerated(0.12) probably_damaging(0.961) TCGA-CN-4736-01 1 39905138 39905138 C T MACF1 Missense_Mutation p.P4079L 0.12 probably_damaging(1) TCGA-CN-4736-01 1 50659453 50659453 C T ELAVL4 Missense_Mutation p.P141L 0.14 deleterious(0) probably_damaging(0.979) TCGA-CN-4736-01 1 60309254 60309254 C T HOOK1 Nonsense_Mutation p.Q258* 0.08 TCGA-CN-4736-01 20 18794840 18794840 G A SCP2D1 Silent p.K127K 0.23 TCGA-CN-4736-01 22 22842040 22842040 A T ZNF280B 3'UTR 0.24 TCGA-CN-4736-01 22 26168444 26168444 G T MYO18B Missense_Mutation p.Q612H 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-CN-4736-01 22 30976074 30976074 C T PES1 Missense_Mutation p.D379N 0.19 deleterious(0) probably_damaging(0.993) TCGA-CN-4736-01 2 1263157 1263157 T G SNTG2 Missense_Mutation p.W341G 0.11 deleterious(0) probably_damaging(0.972) TCGA-CN-4736-01 2 163374452 163374452 G A KCNH7 Missense_Mutation p.P227L 0.07 deleterious(0.04) benign(0.295) TCGA-CN-4736-01 2 164467456 164467456 G A FIGN Nonsense_Mutation p.Q296* 0.09 TCGA-CN-4736-01 2 167055551 167055551 C A SCN9A Missense_Mutation p.R1855S 0.10 deleterious(0) probably_damaging(1) TCGA-CN-4736-01 2 179435645 179435645 C G TTN Missense_Mutation p.V25072L 0.18 TCGA-CN-4736-01 2 186670435 186670435 A G FSIP2 Missense_Mutation p.T5557A 0.09 benign(0.002) TCGA-CN-4736-01 2 206628571 206628571 A G NRP2 Missense_Mutation p.S740G 0.12 tolerated(0.16) benign(0.186) TCGA-CN-4736-01 2 220162103 220162103 C T PTPRN Missense_Mutation p.G647D 0.14 tolerated(0.05) possibly_damaging(0.557) TCGA-CN-4736-01 2 222429107 222429107 T G EPHA4 Missense_Mutation p.E56A 0.19 tolerated(0.23) probably_damaging(0.973) TCGA-CN-4736-01 3 137964179 137964179 G A ARMC8 Intron 0.37 TCGA-CN-4736-01 3 170198588 170198588 G T SLC7A14 Missense_Mutation p.L495I 0.12 tolerated(0.1) benign(0.389) TCGA-CN-4736-01 3 36899181 36899181 G A TRANK1 Nonsense_Mutation p.Q634* 0.18 TCGA-CN-4736-01 3 37818922 37818922 C T ITGA9 Missense_Mutation p.P861S 0.13 tolerated(0.24) benign(0.189) TCGA-CN-4736-01 3 38793780 38793780 G T SCN10A Missense_Mutation p.S562Y 0.25 tolerated(0.06) benign(0.248) TCGA-CN-4736-01 3 52472142 52472142 G A SEMA3G Missense_Mutation p.A528V 0.14 deleterious(0.04) possibly_damaging(0.597) TCGA-CN-4736-01 3 52661286 52661286 T C PBRM1 Intron 0.20 TCGA-CN-4736-01 3 97662106 97662106 A G CRYBG3 Missense_Mutation p.N1006S 0.28 deleterious(0.03) probably_damaging(0.959) TCGA-CN-4736-01 4 107156504 107156504 G T TBCK Missense_Mutation p.N457K 0.10 tolerated(0.42) benign(0.007) TCGA-CN-4736-01 4 25783863 25783863 C T SEL1L3 Splice_Site p.X819_splice 0.17 TCGA-CN-4736-01 5 115298653 115298653 G A AQPEP Silent p.P113P 0.06 TCGA-CN-4736-01 5 1294259 1294259 G A TERT Missense_Mutation p.R248W 0.23 deleterious(0.01) benign(0.424) TCGA-CN-4736-01 5 13807734 13807734 T A DNAH5 Missense_Mutation p.N2618I 0.22 possibly_damaging(0.904) TCGA-CN-4736-01 5 140208639 140208639 C T PCDHA6 Silent p.D321D 0.10 TCGA-CN-4736-01 5 14716935 14716935 C T ANKH Missense_Mutation p.V341M 0.15 tolerated(0.16) benign(0.04) TCGA-CN-4736-01 5 149265901 149265901 C T PDE6A Missense_Mutation p.A589T 0.18 tolerated(0.09) benign(0.393) TCGA-CN-4736-01 5 150930202 150930202 C T FAT2 Silent p.V1509V 0.17 TCGA-CN-4736-01 5 176910984 176910984 C A PDLIM7 Splice_Site p.X391_splice 0.10 TCGA-CN-4736-01 5 178580593 178580593 C T ADAMTS2 Missense_Mutation p.A472T 0.17 tolerated(0.13) benign(0.002) TCGA-CN-4736-01 5 24511576 24511576 T A CDH10 Missense_Mutation p.I288F 0.35 deleterious(0) benign(0.135) TCGA-CN-4736-01 5 5461594 5461594 A T KIAA0947 Missense_Mutation p.N716I 0.38 deleterious(0.02) possibly_damaging(0.822) TCGA-CN-4736-01 6 26545528 26545528 C T HMGN4 Missense_Mutation p.P32S 0.22 deleterious(0.03) benign(0.015) TCGA-CN-4736-01 7 129679338 129679338 C T ZC3HC1 Silent p.E153E 0.07 TCGA-CN-4736-01 7 154672633 154672633 G A DPP6 Missense_Mutation p.R705H 0.11 deleterious(0) probably_damaging(1) TCGA-CN-4736-01 7 44560609 44560609 T C NPC1L1 Missense_Mutation p.N1021S 0.16 deleterious(0.04) benign(0.298) TCGA-CN-4736-01 7 76984548 76984548 C A GSAP Silent p.A440A 0.13 TCGA-CN-4736-01 7 8110681 8110681 G T GLCCI1 Missense_Mutation p.C366F 0.29 tolerated(0.09) possibly_damaging(0.808) TCGA-CN-4736-01 7 91756928 91756928 C T CYP51A1 Silent p.K162K 0.07 TCGA-CN-4736-01 8 105161040 105161040 C T RIMS2 Intron 0.17 TCGA-CN-4736-01 8 12594431 12594431 T A LONRF1 Missense_Mutation p.R444S 0.22 tolerated(0.66) benign(0.026) TCGA-CN-4736-01 8 56864535 56864538 TCTG - LYN Frame_Shift_Del p.V169Efs*38 0.11 TCGA-CN-4736-01 8 68151121 68151121 C T ARFGEF1 Missense_Mutation p.R996K 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-CN-4736-01 8 89180109 89180109 T A MMP16 Silent p.T166T 0.10 TCGA-CN-4736-01 9 139412213 139412213 A T NOTCH1 Missense_Mutation p.C478S 0.12 deleterious(0) probably_damaging(1) TCGA-CN-4736-01 9 15465561 15465561 C G PSIP1 Missense_Mutation p.R517T 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.879) TCGA-CN-4736-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.39 TCGA-CN-4736-01 9 40773300 40773300 C T ZNF658 Missense_Mutation p.E659K 0.20 tolerated(0.33) possibly_damaging(0.722) TCGA-CN-4736-01 X 100333892 100333892 C A TMEM35 5'UTR 0.26 TCGA-CN-4736-01 X 100911937 100911937 G A ARMCX2 Missense_Mutation p.S213L 0.11 deleterious_low_confidence(0.03) benign(0) TCGA-CN-4736-01 X 118221283 118221283 G T KIAA1210 Missense_Mutation p.P1304T 0.15 tolerated(0.07) benign(0.11) TCGA-CN-4736-01 X 128895151 128895151 G A XPNPEP2 Missense_Mutation p.R501Q 0.11 tolerated(0.3) possibly_damaging(0.686) TCGA-CN-4736-01 X 138864754 138864754 T A ATP11C Missense_Mutation p.D638V 0.15 tolerated(0.51) benign(0.007) TCGA-CN-4736-01 X 149639239 149639239 G T MAMLD1 Missense_Mutation p.S440I 0.09 deleterious(0) probably_damaging(0.999) TCGA-CN-4736-01 X 153924265 153924265 C A GAB3 Missense_Mutation p.R486I 0.15 deleterious(0.01) probably_damaging(0.924) TCGA-CN-4736-01 X 155227436 155227436 C A IL9R Silent p.G4G 0.10 TCGA-CN-4737-01 10 100219207 100219207 G A HPSE2 3'UTR 0.22 TCGA-CN-4737-01 10 100219221 100219221 G A HPSE2 3'UTR 0.19 TCGA-CN-4737-01 10 100219325 100219325 G A HPSE2 3'UTR 0.13 TCGA-CN-4737-01 11 18159065 18159065 T C MRGPRX3 Missense_Mutation p.Y106H 0.16 deleterious(0.01) possibly_damaging(0.823) TCGA-CN-4737-01 11 46637146 46637146 C A HARBI1 Silent p.A214A 0.14 TCGA-CN-4737-01 12 109610133 109610133 G A ACACB Silent p.L363L 0.29 TCGA-CN-4737-01 12 23689485 23689485 C A SOX5 Missense_Mutation p.K630N 0.19 deleterious(0) probably_damaging(0.996) TCGA-CN-4737-01 12 49425421 49425421 C T KMT2D Missense_Mutation p.G4356E 0.10 unknown(0) TCGA-CN-4737-01 12 6666429 6666429 T A NOP2 Silent p.T756T 0.12 TCGA-CN-4737-01 12 70956847 70956847 G A PTPRB Silent p.S1315S 0.08 TCGA-CN-4737-01 12 80752037 80752037 C G OTOGL Missense_Mutation p.S2001C 0.21 deleterious(0.01) possibly_damaging(0.761) TCGA-CN-4737-01 13 27845073 27845073 A G RASL11A 5'UTR 0.44 TCGA-CN-4737-01 13 31205139 31205139 C T USPL1 Silent p.D132D 0.32 TCGA-CN-4737-01 13 46701815 46701815 C G LCP1 Missense_Mutation p.A599P 0.03 deleterious(0) probably_damaging(0.998) TCGA-CN-4737-01 14 20854732 20854732 C T TEP1 Missense_Mutation p.G912E 0.23 deleterious(0) probably_damaging(0.999) TCGA-CN-4737-01 14 99641386 99641386 C T BCL11B Missense_Mutation p.G596D 0.11 tolerated(0.74) benign(0.082) TCGA-CN-4737-01 15 101120660 101120660 C A LINS Missense_Mutation p.D130Y 0.13 deleterious(0) probably_damaging(0.99) TCGA-CN-4737-01 16 31477726 31477726 G A ARMC5 Missense_Mutation p.R775Q 0.21 deleterious(0.04) benign(0.024) TCGA-CN-4737-01 17 40117329 40117329 C T CNP 5'Flank 0.18 TCGA-CN-4737-01 17 43012716 43012719 TGCC - KIF18B Frame_Shift_Del p.G127Sfs*4 0.14 TCGA-CN-4737-01 17 7578427 7578427 T A TP53 Missense_Mutation p.H168L 0.16 deleterious(0) benign(0.266) TCGA-CN-4737-01 17 8701070 8701070 C T MFSD6L Missense_Mutation p.V457I 0.20 tolerated(0.07) benign(0.221) TCGA-CN-4737-01 18 3215034 3215034 C T MYOM1 Missense_Mutation p.R63Q 0.25 tolerated_low_confidence(1) benign(0.031) TCGA-CN-4737-01 19 22362786 22362786 T A ZNF676 Missense_Mutation p.Y578F 0.13 deleterious(0.03) benign(0.063) TCGA-CN-4737-01 19 2434446 2434446 C T LMNB2 Missense_Mutation p.R350Q 0.07 deleterious(0.03) possibly_damaging(0.899) TCGA-CN-4737-01 19 53208627 53208638 TATGAATTCTAG - ZNF611 In_Frame_Del p.T557_H560del 0.15 TCGA-CN-4737-01 1 10394634 10394634 C T KIF1B Missense_Mutation p.A948V 0.28 deleterious(0.03) probably_damaging(0.937) TCGA-CN-4737-01 1 160062156 160062156 C T IGSF8 Missense_Mutation p.A548T 0.15 deleterious(0.01) possibly_damaging(0.518) TCGA-CN-4737-01 1 23191380 23191380 C T EPHB2 Silent p.S326S 0.12 TCGA-CN-4737-01 1 2938804 2938804 C T ACTRT2 Missense_Mutation p.A185V 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-CN-4737-01 1 36563712 36563712 G A COL8A2 Missense_Mutation p.P524S 0.64 deleterious(0.03) unknown(0) TCGA-CN-4737-01 1 43900933 43900933 T - SZT2 Frame_Shift_Del p.S1932Rfs*57 0.10 TCGA-CN-4737-01 1 44290524 44290524 G A ST3GAL3 Missense_Mutation p.E126K 0.20 tolerated(0.38) benign(0) TCGA-CN-4737-01 1 44451059 44451059 G T B4GALT2 Missense_Mutation p.D313Y 0.19 deleterious(0) probably_damaging(0.981) TCGA-CN-4737-01 1 47685565 47685565 C T TAL1 Missense_Mutation p.A275T 0.50 tolerated(0.29) benign(0.001) TCGA-CN-4737-01 1 60139745 60139745 C A FGGY Silent p.S508S 0.23 TCGA-CN-4737-01 20 23350773 23350773 G A GZF1 Missense_Mutation p.D611N 0.33 deleterious(0) possibly_damaging(0.786) TCGA-CN-4737-01 2 122485367 122485367 T A NIFK Missense_Mutation p.E272V 0.17 deleterious(0.02) benign(0.271) TCGA-CN-4737-01 2 179399515 179399515 C A TTN Nonsense_Mutation p.E33943* 0.43 TCGA-CN-4737-01 2 234652585 234652585 C T UGT1A10 Intron 0.22 TCGA-CN-4737-01 2 69556851 69556851 C T GFPT1 Missense_Mutation p.R521H 0.21 deleterious(0.03) probably_damaging(0.92) TCGA-CN-4737-01 2 99949494 99949494 C T TXNDC9 Silent p.Q60Q 0.22 TCGA-CN-4737-01 3 73432375 73432375 A C PDZRN3 3'UTR 0.16 TCGA-CN-4737-01 4 159091598 159091598 G A FAM198B Intron 0.27 TCGA-CN-4737-01 4 187518256 187518256 G A FAT1 Silent p.H4146H 0.15 TCGA-CN-4737-01 4 2641515 2641515 C T FAM193A Silent p.H73H 0.17 TCGA-CN-4737-01 4 72618359 72618359 T C GC Missense_Mutation p.E443G 0.10 deleterious(0.03) benign(0.059) TCGA-CN-4737-01 4 77675899 77675899 G A SHROOM3 Silent p.S1421S 0.17 TCGA-CN-4737-01 5 154394335 154394335 C G KIF4B Missense_Mutation p.H306D 0.23 deleterious(0.01) possibly_damaging(0.474) TCGA-CN-4737-01 6 152660381 152660381 G T SYNE1 Missense_Mutation p.Q4116K 0.31 possibly_damaging(0.889) TCGA-CN-4737-01 6 30640690 30640690 C T DHX16 5'UTR 0.42 TCGA-CN-4737-01 6 51927390 51927390 C T PKHD1 Missense_Mutation p.G349R 0.17 deleterious(0) probably_damaging(1) TCGA-CN-4737-01 6 564672 564672 C T EXOC2 Missense_Mutation p.V514M 0.13 deleterious(0.02) benign(0.248) TCGA-CN-4737-01 7 5104738 5104738 T C RBAK Silent p.L551L 0.12 TCGA-CN-4737-01 7 5662726 5662726 G A RNF216 Missense_Mutation p.P846L 0.14 deleterious(0) possibly_damaging(0.529) TCGA-CN-4737-01 8 61765872 61765872 C T CHD7 Silent p.T2196T 0.12 TCGA-CN-4737-01 8 88885104 88885104 C T DCAF4L2 Missense_Mutation p.V366M 0.09 deleterious(0) probably_damaging(0.985) TCGA-CN-4737-01 9 140161436 140161436 C T NELFB Missense_Mutation p.S379F 0.15 deleterious(0) possibly_damaging(0.682) TCGA-CN-4737-01 9 35107972 35107972 C T FAM214B Silent p.G100G 0.08 TCGA-CN-4738-01 10 103345697 103345697 T C POLL Missense_Mutation p.K111R 0.19 tolerated(0.15) benign(0.242) TCGA-CN-4738-01 10 104176509 104176509 G A PSD Missense_Mutation p.A96V 0.06 deleterious_low_confidence(0.02) benign(0.015) TCGA-CN-4738-01 10 106153149 106153149 A G CCDC147 Silent p.K530K 0.07 TCGA-CN-4738-01 10 25887454 25887454 C A GPR158 Missense_Mutation p.P967T 0.04 tolerated(0.74) benign(0.002) TCGA-CN-4738-01 10 71060577 71060577 G A HK1 Intron 0.07 TCGA-CN-4738-01 11 102272786 102272786 G C TMEM123 Silent p.V103V 0.09 TCGA-CN-4738-01 11 12229646 12229646 C T MICAL2 Silent p.F183F 0.11 TCGA-CN-4738-01 11 132290129 132290129 C G OPCML Missense_Mutation p.W332C 0.06 tolerated(0.13) benign(0.002) TCGA-CN-4738-01 11 46397933 46397933 G A DGKZ Nonsense_Mutation p.W904* 0.16 TCGA-CN-4738-01 11 5153039 5153039 G A OR52A5 Silent p.L278L 0.17 TCGA-CN-4738-01 11 56128372 56128372 C A OR8J1 Missense_Mutation p.S217Y 0.11 deleterious(0) probably_damaging(0.958) TCGA-CN-4738-01 11 61067685 61067685 C A DDB1 Missense_Mutation p.D1116Y 0.21 tolerated(0.06) benign(0.035) TCGA-CN-4738-01 11 64129153 64129153 C A RPS6KA4 Missense_Mutation p.L231M 0.05 tolerated(0.27) probably_damaging(0.917) TCGA-CN-4738-01 11 66473195 66473195 G A SPTBN2 Silent p.A589A 0.14 TCGA-CN-4738-01 11 6913385 6913385 G A OR2D2 Missense_Mutation p.A116V 0.13 tolerated(0.12) benign(0.126) TCGA-CN-4738-01 11 74329716 74329716 G A POLD3 Missense_Mutation p.G176D 0.11 deleterious(0.04) probably_damaging(1) TCGA-CN-4738-01 11 8752204 8752204 C T ST5 Silent p.P211P 0.12 TCGA-CN-4738-01 12 111311766 111311766 G A CCDC63 Splice_Site p.X163_splice 0.17 TCGA-CN-4738-01 12 112318261 112318261 C T MAPKAPK5 Missense_Mutation p.A197V 0.06 deleterious(0) probably_damaging(0.954) TCGA-CN-4738-01 12 126128668 126128668 A G TMEM132B Missense_Mutation p.K490R 0.10 tolerated(0.29) benign(0.052) TCGA-CN-4738-01 12 40441956 40441956 T C SLC2A13 Missense_Mutation p.R205G 0.10 deleterious(0.02) probably_damaging(1) TCGA-CN-4738-01 12 40645303 40645303 T G LRRK2 Missense_Mutation p.Y380D 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-CN-4738-01 12 57577638 57577638 G T LRP1 Missense_Mutation p.V1959L 0.17 benign(0.256) TCGA-CN-4738-01 12 6472662 6472662 G A SCNN1A Missense_Mutation p.R270W 0.12 deleterious(0.02) benign(0.019) TCGA-CN-4738-01 12 7640635 7640635 C A CD163 Missense_Mutation p.R490L 0.10 deleterious(0.01) possibly_damaging(0.761) TCGA-CN-4738-01 13 107147297 107147297 C T EFNB2 Missense_Mutation p.R182H 0.04 tolerated(0.55) benign(0.002) TCGA-CN-4738-01 13 113824825 113824825 G T PROZ Missense_Mutation p.R246S 0.10 tolerated(0.95) benign(0.008) TCGA-CN-4738-01 14 21992498 21992498 G T SALL2 Missense_Mutation p.S455Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-CN-4738-01 14 23447610 23447611 - ATTG AJUBA Frame_Shift_Ins p.A351Qfs*39 0.29 TCGA-CN-4738-01 14 31642844 31642844 G A HECTD1 Missense_Mutation p.R258C 0.07 deleterious(0.04) possibly_damaging(0.854) TCGA-CN-4738-01 14 70527612 70527612 C T SLC8A3 Missense_Mutation p.R610K 0.20 tolerated(1) benign(0.001) TCGA-CN-4738-01 15 25315595 25315595 C T SNORD116-8 RNA 0.04 TCGA-CN-4738-01 15 25490631 25490631 G C SNORD115-41 RNA 0.07 TCGA-CN-4738-01 15 29561302 29561302 C A NDNL2 Missense_Mutation p.R203L 0.15 deleterious(0.05) possibly_damaging(0.559) TCGA-CN-4738-01 15 51041830 51041830 T A SPPL2A Intron 0.10 TCGA-CN-4738-01 15 51757808 51757808 G A DMXL2 Missense_Mutation p.H2521Y 0.11 tolerated(0.29) benign(0.024) TCGA-CN-4738-01 15 88483890 88483890 G T NTRK3 Silent p.L560L 0.24 TCGA-CN-4738-01 16 15812199 15812199 G T MYH11 Missense_Mutation p.S1763R 0.15 possibly_damaging(0.458) TCGA-CN-4738-01 16 21693074 21693074 G T OTOA Silent p.T65T 0.15 TCGA-CN-4738-01 17 27209178 27209178 G A FLOT2 Silent p.F219F 0.11 TCGA-CN-4738-01 17 37933964 37933964 G A IKZF3 Silent p.L256L 0.12 TCGA-CN-4738-01 17 74538650 74538650 G A PRCD Silent p.L53L 0.12 TCGA-CN-4738-01 17 74538689 74538689 G C PRCD 3'UTR 0.18 TCGA-CN-4738-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.05 TCGA-CN-4738-01 18 20555121 20555121 G C RBBP8 Missense_Mutation p.E123Q 0.05 deleterious(0) probably_damaging(0.962) TCGA-CN-4738-01 18 3135616 3135616 C A MYOM1 Missense_Mutation p.R713L 0.15 tolerated(0.06) probably_damaging(0.982) TCGA-CN-4738-01 19 22940600 22940600 G C ZNF99 Missense_Mutation p.P704R 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-CN-4738-01 19 38103919 38103919 A G ZNF540 Missense_Mutation p.K580E 0.06 tolerated(1) benign(0) TCGA-CN-4738-01 19 4428796 4428796 G A CHAF1A Missense_Mutation p.E505K 0.12 tolerated(0.34) benign(0.087) TCGA-CN-4738-01 19 53762257 53762257 G A VN1R2 Missense_Mutation p.G210D 0.10 tolerated(0.06) possibly_damaging(0.463) TCGA-CN-4738-01 1 10207077 10207077 G A UBE4B Silent p.L840L 0.13 TCGA-CN-4738-01 1 151774631 151774631 T A LINGO4 Missense_Mutation p.T184S 0.15 tolerated(0.5) benign(0.001) TCGA-CN-4738-01 1 152326395 152326395 T C FLG2 Silent p.S1289S 0.14 TCGA-CN-4738-01 1 157789843 157789843 G A FCRL1 5'UTR 0.14 TCGA-CN-4738-01 1 201044689 201044689 C T CACNA1S Missense_Mutation p.G628S 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-CN-4738-01 1 217793361 217793361 C T GPATCH2 Silent p.R179R 0.12 TCGA-CN-4738-01 1 227069674 227069674 G A PSEN2 Silent p.S22S 0.14 TCGA-CN-4738-01 1 23688996 23688996 G A ZNF436 Silent p.L293L 0.09 TCGA-CN-4738-01 1 236902717 236902717 A G ACTN2 Missense_Mutation p.K331R 0.12 deleterious(0.02) probably_damaging(0.981) TCGA-CN-4738-01 1 29644357 29644357 C T PTPRU Missense_Mutation p.P1214L 0.14 deleterious(0) probably_damaging(0.939) TCGA-CN-4738-01 1 29644358 29644358 G C PTPRU Silent p.P1214P 0.16 TCGA-CN-4738-01 1 44461305 44461305 C T CCDC24 Silent p.C195C 0.10 TCGA-CN-4738-01 1 91781517 91781517 T A HFM1 Missense_Mutation p.S999C 0.17 deleterious(0.04) benign(0.049) TCGA-CN-4738-01 1 92713516 92713516 C T GLMN Missense_Mutation p.E502K 0.06 tolerated(0.34) benign(0.038) TCGA-CN-4738-01 1 99764696 99764696 A G LPPR4 Missense_Mutation p.Y215C 0.08 deleterious(0) probably_damaging(0.995) TCGA-CN-4738-01 20 23731351 23731351 G A CST1 Silent p.A51A 0.18 TCGA-CN-4738-01 20 31887714 31887714 C A BPIFB1 Missense_Mutation p.S224Y 0.15 deleterious(0.03) benign(0.219) TCGA-CN-4738-01 20 33128406 33128406 T C DYNLRB1 Missense_Mutation p.V90A 0.12 deleterious(0.01) benign(0.167) TCGA-CN-4738-01 20 333907 333907 C T NRSN2 Silent p.T81T 0.14 TCGA-CN-4738-01 20 57268962 57268962 C A NPEPL1 Missense_Mutation p.A107E 0.24 tolerated(0.78) benign(0.002) TCGA-CN-4738-01 20 60906173 60906173 G A LAMA5 Silent p.L1189L 0.16 TCGA-CN-4738-01 21 35468451 35468451 G A SLC5A3 Missense_Mutation p.M318I 0.06 deleterious(0) probably_damaging(0.991) TCGA-CN-4738-01 22 19340889 19340889 G A HIRA Silent p.L946L 0.22 TCGA-CN-4738-01 22 36054943 36054943 C T APOL6 Missense_Mutation p.T111I 0.08 deleterious(0.02) benign(0.071) TCGA-CN-4738-01 2 112638323 112638323 T C ANAPC1 Missense_Mutation p.H27R 0.13 tolerated(0.32) possibly_damaging(0.844) TCGA-CN-4738-01 2 120712819 120712819 C G PTPN4 Missense_Mutation p.Q634E 0.10 tolerated(1) benign(0.002) TCGA-CN-4738-01 2 131976431 131976431 C - POTEE Frame_Shift_Del p.R154Efs*13 0.10 TCGA-CN-4738-01 2 141027890 141027890 T A LRP1B Missense_Mutation p.S4390C 0.06 possibly_damaging(0.7) TCGA-CN-4738-01 2 169780102 169780102 G T ABCB11 3'UTR 0.09 TCGA-CN-4738-01 2 179596836 179596836 A C TTN Missense_Mutation p.N5620K 0.08 TCGA-CN-4738-01 2 196825341 196825341 C T DNAH7 Missense_Mutation p.C845Y 0.10 deleterious(0) possibly_damaging(0.781) TCGA-CN-4738-01 2 25038610 25038610 G A CENPO Silent p.Q193Q 0.16 TCGA-CN-4738-01 2 27322714 27322714 C G CGREF1 3'Flank 0.25 TCGA-CN-4738-01 2 73676156 73676156 T A ALMS1 Silent p.A833A 0.16 TCGA-CN-4738-01 2 85598671 85598671 A G ELMOD3 Missense_Mutation p.D198G 0.12 deleterious(0.03) probably_damaging(0.972) TCGA-CN-4738-01 2 89082281 89082281 T C ANKRD36BP2 Splice_Site 0.05 TCGA-CN-4738-01 3 118866242 118866242 C T C3orf30 Silent p.L402L 0.17 TCGA-CN-4738-01 3 164906642 164906642 G T SLITRK3 Missense_Mutation p.S659R 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-CN-4738-01 3 47453167 47453167 G C PTPN23 Missense_Mutation p.E1293D 0.11 probably_damaging(0.99) TCGA-CN-4738-01 3 49724469 49724469 G A MST1 Silent p.Y213Y 0.07 TCGA-CN-4738-01 4 104062022 104062022 G C CENPE Silent p.L1901L 0.05 TCGA-CN-4738-01 4 113540216 113540216 C A C4orf21 Missense_Mutation p.A328S 0.17 tolerated(0.33) benign(0.032) TCGA-CN-4738-01 4 1941600 1941600 G T WHSC1 Intron 0.21 TCGA-CN-4738-01 4 39217727 39217727 C G WDR19 Missense_Mutation p.I382M 0.15 tolerated(0.2) benign(0.009) TCGA-CN-4738-01 5 140176991 140176991 C G PCDHA2 Intron 0.19 TCGA-CN-4738-01 5 160721372 160721372 C G GABRB2 Missense_Mutation p.E419Q 0.07 tolerated(0.09) benign(0.209) TCGA-CN-4738-01 5 60199489 60199489 G A ERCC8 Missense_Mutation p.S179F 0.07 deleterious(0.04) benign(0.308) TCGA-CN-4738-01 6 102074478 102074478 G A GRIK2 Nonsense_Mutation p.W169* 0.05 TCGA-CN-4738-01 6 123377032 123377032 C T CLVS2 Silent p.L253L 0.07 TCGA-CN-4738-01 6 152477074 152477074 A C SYNE1 Missense_Mutation p.I7983M 0.09 probably_damaging(0.983) TCGA-CN-4738-01 6 33419553 33419553 C T SYNGAP1 Missense_Mutation p.P1301L 0.17 deleterious(0) benign(0.096) TCGA-CN-4738-01 6 42235962 42235962 G T TRERF1 Missense_Mutation p.P456H 0.18 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-CN-4738-01 6 93967234 93967234 T A EPHA7 Silent p.P706P 0.06 TCGA-CN-4738-01 6 99283871 99283871 C G POU3F2 Silent p.L374L 0.06 TCGA-CN-4738-01 7 102614110 102614110 A T FBXL13 Intron 0.16 TCGA-CN-4738-01 7 11441597 11441597 T A THSD7A Splice_Site p.X1413_splice 0.17 TCGA-CN-4738-01 7 146471413 146471413 A T CNTNAP2 Missense_Mutation p.S50C 0.11 deleterious(0.02) probably_damaging(0.98) TCGA-CN-4738-01 7 19765251 19765251 G A TMEM196 Silent p.I115I 0.11 TCGA-CN-4738-01 7 77531083 77531083 T C PHTF2 Silent p.S63S 0.22 TCGA-CN-4738-01 7 8258017 8258017 T C ICA1 Missense_Mutation p.Y166C 0.17 deleterious(0) probably_damaging(1) TCGA-CN-4738-01 7 90338806 90338806 A G CDK14 5'UTR 0.05 TCGA-CN-4738-01 7 99129118 99129118 G A ZKSCAN5 Missense_Mutation p.R589H 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-CN-4738-01 8 104898224 104898224 T C RIMS2 Missense_Mutation p.V466A 0.18 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-CN-4738-01 8 124253497 124253497 G C C8orf76 Silent p.S30S 0.13 TCGA-CN-4738-01 8 21986582 21986582 A C HR Missense_Mutation p.D34E 0.14 tolerated_low_confidence(0.14) benign(0.024) TCGA-CN-4738-01 8 6378700 6378700 G T ANGPT2 Missense_Mutation p.N266K 0.16 tolerated(0.9) benign(0.001) TCGA-CN-4738-01 8 69633633 69633633 G T C8orf34 Missense_Mutation p.E455D 0.08 tolerated(0.42) benign(0.013) TCGA-CN-4738-01 9 100412850 100412850 C T NCBP1 Silent p.I321I 0.15 TCGA-CN-4738-01 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.16 deleterious(0) probably_damaging(1) TCGA-CN-4738-01 9 27950348 27950348 G A LINGO2 Missense_Mutation p.R108C 0.14 deleterious(0) probably_damaging(0.957) TCGA-CN-4738-01 9 71951158 71951158 A T FAM189A2 5'UTR 0.13 TCGA-CN-4738-01 X 101139287 101139287 G A ZMAT1 Missense_Mutation p.S371L 0.21 tolerated(0.09) benign(0.038) TCGA-CN-4738-01 X 125686312 125686312 G T DCAF12L1 Missense_Mutation p.L94M 0.26 deleterious(0) probably_damaging(0.999) TCGA-CN-4738-01 X 12905767 12905767 G A TLR7 Missense_Mutation p.V714I 0.14 tolerated(0.1) possibly_damaging(0.517) TCGA-CN-4738-01 X 144909491 144909491 C A TMEM257 Missense_Mutation p.A99D 0.32 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-CN-4738-01 X 15792452 15792452 A T CA5B Nonsense_Mutation p.R163* 0.11 TCGA-CN-4738-01 X 29972705 29972705 C G IL1RAPL1 Missense_Mutation p.T423S 0.18 tolerated(0.26) benign(0.004) TCGA-CN-4738-01 X 54951479 54951479 G A TRO Missense_Mutation p.R488Q 0.13 tolerated(0.13) unknown(0) TCGA-CN-4738-01 X 82763302 82763302 C T POU3F4 5'UTR 0.12 TCGA-CN-4738-01 X 91133549 91133549 G T PCDH11X Silent p.L770L 0.11 TCGA-CN-4739-01 10 104860861 104860861 T C NT5C2 Splice_Site p.X161_splice 0.21 TCGA-CN-4739-01 10 115895718 115895718 T A C10orf118 Nonsense_Mutation p.K482* 0.31 TCGA-CN-4739-01 10 117226686 117226686 G T ATRNL1 Silent p.S1140S 0.15 TCGA-CN-4739-01 10 118355756 118355756 C T PNLIPRP1 Missense_Mutation p.H166Y 0.23 deleterious(0.01) probably_damaging(0.978) TCGA-CN-4739-01 10 126715459 126715459 G T CTBP2 Silent p.L290L 0.19 TCGA-CN-4739-01 10 18689889 18689889 C A CACNB2 Intron 0.42 TCGA-CN-4739-01 10 29822126 29822126 C A SVIL Missense_Mutation p.E390D 0.26 tolerated_low_confidence(0.39) benign(0.25) TCGA-CN-4739-01 10 69695987 69695987 T A HERC4 Silent p.T867T 0.22 TCGA-CN-4739-01 10 72285834 72285834 T A PALD1 Missense_Mutation p.L43M 0.21 deleterious(0.01) possibly_damaging(0.45) TCGA-CN-4739-01 10 87482888 87482888 A G GRID1 Silent p.S623S 0.20 TCGA-CN-4739-01 10 90122454 90122454 C T RNLS Silent p.L185L 0.29 TCGA-CN-4739-01 10 99343356 99343356 G C ANKRD2 Silent p.L319L 0.35 TCGA-CN-4739-01 11 108160406 108160406 T C ATM Silent p.I1438I 0.08 TCGA-CN-4739-01 11 119003216 119003216 C G HINFP Missense_Mutation p.F229L 0.32 tolerated(0.17) benign(0.075) TCGA-CN-4739-01 11 119243870 119243870 G T USP2 Silent p.L107L 0.12 TCGA-CN-4739-01 11 121016545 121016545 C A TECTA Silent p.T1275T 0.23 TCGA-CN-4739-01 11 13410220 13410220 T C BTBD10 3'UTR 0.24 TCGA-CN-4739-01 11 17547981 17547981 C A USH1C Missense_Mutation p.R196L 0.08 tolerated(0.07) benign(0.001) TCGA-CN-4739-01 11 43513568 43513568 A T TTC17 Splice_Site p.X1051_splice 0.29 TCGA-CN-4739-01 11 55065041 55065041 A - TRIM51HP RNA 0.26 TCGA-CN-4739-01 11 55541467 55541467 T C OR5D13 Missense_Mutation p.V185A 0.13 tolerated(1) benign(0.005) TCGA-CN-4739-01 11 55541468 55541468 A T OR5D13 Silent p.V185V 0.13 TCGA-CN-4739-01 11 56128342 56128342 T C OR8J1 Missense_Mutation p.V207A 0.23 deleterious(0.01) benign(0.155) TCGA-CN-4739-01 11 67047163 67047163 C A ADRBK1 Missense_Mutation p.L145I 0.20 tolerated(0.11) benign(0.261) TCGA-CN-4739-01 12 101576647 101576647 C A SLC5A8 Missense_Mutation p.D367Y 0.15 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 12 113515368 113515368 C T DTX1 Silent p.Y133Y 0.06 TCGA-CN-4739-01 12 2705075 2705075 C T CACNA1C Missense_Mutation p.T900M 0.22 tolerated(0.07) benign(0.173) TCGA-CN-4739-01 12 29786262 29786262 T C TMTC1 Missense_Mutation p.T316A 0.06 deleterious(0) probably_damaging(0.986) TCGA-CN-4739-01 12 32903773 32903773 T A YARS2 Missense_Mutation p.E328V 0.20 deleterious(0.01) benign(0.316) TCGA-CN-4739-01 12 41961614 41961614 G A PDZRN4 Silent p.R499R 0.20 TCGA-CN-4739-01 12 4479556 4479557 - A FGF23 Frame_Shift_Ins p.G237Wfs*25 0.19 TCGA-CN-4739-01 12 4479673 4479673 G A FGF23 Missense_Mutation p.R198W 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-4739-01 12 56648493 56648493 C A ANKRD52 Missense_Mutation p.V188F 0.16 deleterious(0) probably_damaging(0.995) TCGA-CN-4739-01 12 57112034 57112034 G A NACA Intron 0.24 TCGA-CN-4739-01 12 72425551 72425551 A G TPH2 3'UTR 0.17 TCGA-CN-4739-01 12 78511822 78511822 G A NAV3 Missense_Mutation p.E929K 0.17 deleterious(0) possibly_damaging(0.669) TCGA-CN-4739-01 12 80658860 80658860 C G OTOGL Nonsense_Mutation p.Y689* 0.27 TCGA-CN-4739-01 12 81768486 81768486 T A PPFIA2 Missense_Mutation p.Q398L 0.28 deleterious(0) probably_damaging(0.956) TCGA-CN-4739-01 12 89918285 89918285 C T GALNT4 Silent p.L14L 0.05 TCGA-CN-4739-01 12 99056498 99056498 A G APAF1 Missense_Mutation p.K290R 0.18 deleterious(0.01) possibly_damaging(0.806) TCGA-CN-4739-01 13 33334734 33334734 G C PDS5B Missense_Mutation p.G1132R 0.23 deleterious(0.03) probably_damaging(1) TCGA-CN-4739-01 13 51826206 51826206 G A FAM124A Missense_Mutation p.D271N 0.34 deleterious(0) probably_damaging(0.988) TCGA-CN-4739-01 13 96242634 96242634 C T DZIP1 Missense_Mutation p.R581K 0.33 deleterious(0.03) possibly_damaging(0.622) TCGA-CN-4739-01 14 104561928 104561928 G A ASPG Missense_Mutation p.A122T 0.36 tolerated(1) probably_damaging(0.957) TCGA-CN-4739-01 14 105932764 105932764 G A MTA1 Silent p.E542E 0.46 TCGA-CN-4739-01 14 106208278 106208278 T A IGHG1 Missense_Mutation p.N208Y 0.11 deleterious(0) probably_damaging(0.99) TCGA-CN-4739-01 14 38724597 38724597 C T CLEC14A Missense_Mutation p.E211K 0.29 tolerated(0.96) benign(0.002) TCGA-CN-4739-01 14 45431656 45431656 T A FAM179B Missense_Mutation p.L11Q 0.10 tolerated_low_confidence(0.12) unknown(0) TCGA-CN-4739-01 14 45711704 45711704 G C MIS18BP1 Missense_Mutation p.Q226E 0.26 tolerated(0.19) benign(0.021) TCGA-CN-4739-01 14 51101836 51101836 T A SAV1 3'UTR 0.31 TCGA-CN-4739-01 14 55836310 55836310 G C ATG14 3'UTR 0.06 TCGA-CN-4739-01 14 67940192 67940192 G T TMEM229B Missense_Mutation p.P150H 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.527) TCGA-CN-4739-01 14 75551183 75551183 A T NEK9 3'UTR 0.28 TCGA-CN-4739-01 15 20643936 20643936 G A HERC2P3 RNA 0.13 TCGA-CN-4739-01 15 24922320 24922320 C A NPAP1 Missense_Mutation p.P436T 0.25 tolerated(0.25) benign(0.1) TCGA-CN-4739-01 15 75557691 75557691 C T GOLGA6C Missense_Mutation p.R229W 0.15 deleterious(0) benign(0.308) TCGA-CN-4739-01 15 79089014 79089014 G T ADAMTS7 Missense_Mutation p.T246N 0.05 deleterious(0) probably_damaging(0.996) TCGA-CN-4739-01 15 99467897 99467897 C T IGF1R Silent p.F922F 0.17 TCGA-CN-4739-01 16 19612993 19612993 C G C16orf62 Silent p.L333L 0.17 TCGA-CN-4739-01 16 2164578 2164578 C A PKD1 Missense_Mutation p.D816Y 0.38 benign(0.092) TCGA-CN-4739-01 16 24268046 24268046 C A CACNG3 5'UTR 0.28 TCGA-CN-4739-01 16 24580864 24580864 A T RBBP6 Silent p.P951P 0.20 TCGA-CN-4739-01 16 28840776 28840776 G T ATXN2L Missense_Mutation p.V266L 0.21 deleterious(0.04) probably_damaging(0.986) TCGA-CN-4739-01 16 50763774 50763774 G T NOD2 Silent p.L1004L 0.17 TCGA-CN-4739-01 16 53671604 53671604 C T RPGRIP1L Intron 0.24 TCGA-CN-4739-01 16 53686756 53686756 T A RPGRIP1L Missense_Mutation p.T615S 0.08 tolerated(0.7) benign(0.002) TCGA-CN-4739-01 16 53708989 53708989 C T RPGRIP1L Silent p.Q274Q 0.06 TCGA-CN-4739-01 16 55362806 55362806 C T IRX6 Missense_Mutation p.R306C 0.06 deleterious(0.01) possibly_damaging(0.487) TCGA-CN-4739-01 16 56481815 56481815 C G NUDT21 Missense_Mutation p.R68T 0.05 deleterious(0) possibly_damaging(0.568) TCGA-CN-4739-01 16 72188154 72188154 C A PMFBP1 Missense_Mutation p.D124Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-CN-4739-01 16 739435 739435 C A WDR24 Missense_Mutation p.R69L 0.31 deleterious(0) probably_damaging(0.95) TCGA-CN-4739-01 16 84188370 84188370 A T DNAAF1 Missense_Mutation p.S181C 0.25 deleterious(0.02) possibly_damaging(0.703) TCGA-CN-4739-01 16 85822627 85822627 G A EMC8 Silent p.Y87Y 0.08 TCGA-CN-4739-01 16 89251724 89251724 G C CDH15 Missense_Mutation p.V216L 0.35 deleterious(0.04) possibly_damaging(0.859) TCGA-CN-4739-01 17 25748074 25748074 C G TBC1D3P5 RNA 0.30 TCGA-CN-4739-01 17 27185506 27185506 T C ERAL1 Splice_Site p.X237_splice 0.28 TCGA-CN-4739-01 17 32647835 32647835 G - CCL8 Frame_Shift_Del p.G71Afs*17 0.08 TCGA-CN-4739-01 17 33586236 33586236 T G SLFN5 Missense_Mutation p.F176C 0.27 deleterious(0) probably_damaging(0.997) TCGA-CN-4739-01 17 37673803 37673803 T C CDK12 Missense_Mutation p.F986S 0.12 probably_damaging(0.998) TCGA-CN-4739-01 17 40342689 40342689 G A GHDC Missense_Mutation p.A414V 0.06 deleterious(0.01) benign(0.19) TCGA-CN-4739-01 17 42254108 42254109 GC - ASB16 Frame_Shift_Del p.A192Qfs*67 0.23 TCGA-CN-4739-01 17 48777946 48777946 A G ANKRD40 Missense_Mutation p.I89T 0.26 deleterious(0) possibly_damaging(0.888) TCGA-CN-4739-01 17 60759630 60759630 G T MRC2 Missense_Mutation p.L946F 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4739-01 17 67218723 67218723 A G ABCA10 Silent p.F50F 0.46 TCGA-CN-4739-01 17 71282368 71282368 G A CDC42EP4 Missense_Mutation p.S91L 0.27 deleterious(0.03) benign(0.017) TCGA-CN-4739-01 17 74569350 74569350 C T ST6GALNAC2 Missense_Mutation p.V153M 0.16 probably_damaging(0.998) TCGA-CN-4739-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.59 tolerated(0.09) benign(0.344) TCGA-CN-4739-01 17 78313928 78313928 C A RNF213 Silent p.R1921R 0.44 TCGA-CN-4739-01 17 8638909 8638909 C A CCDC42 Silent p.V171V 0.08 TCGA-CN-4739-01 18 12325643 12325643 C A TUBB6 Silent p.T285T 0.29 TCGA-CN-4739-01 18 32345948 32345948 C T DTNA Nonsense_Mutation p.R31* 0.09 TCGA-CN-4739-01 19 1042123 1042123 G T ABCA7 Silent p.T121T 0.22 TCGA-CN-4739-01 19 11762502 11762502 G C ZNF833P RNA 0.16 TCGA-CN-4739-01 19 11943025 11943025 G A ZNF440 Missense_Mutation p.C345Y 0.18 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 19 21587932 21587932 G A ZNF493 Missense_Mutation p.G11E 0.24 tolerated(0.21) probably_damaging(0.999) TCGA-CN-4739-01 19 2717400 2717400 C G DIRAS1 Silent p.A135A 0.22 TCGA-CN-4739-01 19 29698442 29698442 G C UQCRFS1 3'UTR 0.16 TCGA-CN-4739-01 19 3009612 3009612 C A TLE2 Silent p.V367V 0.11 TCGA-CN-4739-01 19 30935280 30935280 G C ZNF536 Missense_Mutation p.A271P 0.22 tolerated(0.11) possibly_damaging(0.765) TCGA-CN-4739-01 19 35434153 35434153 G C ZNF30 Missense_Mutation p.G96R 0.23 tolerated(0.31) benign(0.19) TCGA-CN-4739-01 19 3589862 3589862 G T GIPC3 Missense_Mutation p.V247F 0.16 deleterious(0.02) benign(0.018) TCGA-CN-4739-01 19 38159927 38159927 C T ZNF781 3'UTR 0.10 TCGA-CN-4739-01 19 38976768 38976768 C T RYR1 Missense_Mutation p.H1825Y 0.27 possibly_damaging(0.51) TCGA-CN-4739-01 19 39215092 39215092 C T ACTN4 Missense_Mutation p.R633W 0.17 deleterious(0) probably_damaging(0.999) TCGA-CN-4739-01 19 4292863 4292863 G A TMIGD2 Silent p.N194N 0.17 TCGA-CN-4739-01 19 4537868 4537868 C A LRG1 3'UTR 0.25 TCGA-CN-4739-01 19 48908443 48908443 A C GRIN2D Silent p.A306A 0.16 TCGA-CN-4739-01 19 49340739 49340739 T G PLEKHA4 Missense_Mutation p.Q716P 0.25 tolerated_low_confidence(0.07) benign(0.002) TCGA-CN-4739-01 19 51021898 51021898 G T LRRC4B Missense_Mutation p.H358N 0.23 tolerated(0.34) benign(0.009) TCGA-CN-4739-01 19 51226671 51226671 G - CLEC11A 5'UTR 0.27 TCGA-CN-4739-01 19 52249531 52249531 G - FPR1 Frame_Shift_Del p.L240Yfs*24 0.26 TCGA-CN-4739-01 19 55606107 55606107 G A PPP1R12C Missense_Mutation p.P505L 0.40 tolerated(0.16) benign(0.002) TCGA-CN-4739-01 19 56466303 56466303 T A NLRP8 Silent p.S293S 0.18 TCGA-CN-4739-01 19 56552287 56552287 G T NLRP5 Splice_Site p.X929_splice 0.21 TCGA-CN-4739-01 19 58579484 58579484 C A ZNF135 Missense_Mutation p.H568Q 0.21 deleterious(0) possibly_damaging(0.732) TCGA-CN-4739-01 19 58867501 58867501 C T ZNF497 3'UTR 0.16 TCGA-CN-4739-01 19 9062982 9062982 C A MUC16 Missense_Mutation p.R8155M 0.18 unknown(0) TCGA-CN-4739-01 1 102270397 102270397 C A OLFM3 Silent p.G258G 0.19 TCGA-CN-4739-01 1 102270399 102270399 C A OLFM3 Missense_Mutation p.G258W 0.19 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 1 109811810 109811810 A G CELSR2 Missense_Mutation p.H2237R 0.21 tolerated(0.14) probably_damaging(0.968) TCGA-CN-4739-01 1 112298449 112298449 T A DDX20 5'UTR 0.50 TCGA-CN-4739-01 1 115110627 115110627 T C BCAS2 3'UTR 0.50 TCGA-CN-4739-01 1 115272925 115272925 G T CSDE1 Missense_Mutation p.T483N 0.07 tolerated(0.48) benign(0.062) TCGA-CN-4739-01 1 149858193 149858193 T C HIST2H2BE 5'UTR 0.28 TCGA-CN-4739-01 1 149915890 149915890 T A OTUD7B Missense_Mutation p.T800S 0.25 tolerated_low_confidence(0.51) benign(0.084) TCGA-CN-4739-01 1 152282662 152282662 C A FLG Missense_Mutation p.R1567L 0.21 possibly_damaging(0.569) TCGA-CN-4739-01 1 154459001 154459001 A T SHE Splice_Site p.X394_splice 0.19 TCGA-CN-4739-01 1 156565514 156565514 G C GPATCH4 Missense_Mutation p.P207A 0.16 tolerated(0.14) benign(0.437) TCGA-CN-4739-01 1 158906896 158906896 A G PYHIN1 Missense_Mutation p.I66V 0.25 deleterious(0.01) possibly_damaging(0.863) TCGA-CN-4739-01 1 159850410 159850410 T C CCDC19 Silent p.K326K 0.23 TCGA-CN-4739-01 1 169582194 169582194 A T SELP Missense_Mutation p.W250R 0.23 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 1 180780558 180780558 A T XPR1 Missense_Mutation p.T233S 0.27 deleterious(0.03) possibly_damaging(0.885) TCGA-CN-4739-01 1 196971751 196971751 T A CFHR5 Silent p.I429I 0.30 TCGA-CN-4739-01 1 196973835 196973835 G C CFHR5 Missense_Mutation p.D459H 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-CN-4739-01 1 197396747 197396747 T A CRB1 Silent p.R764R 0.27 TCGA-CN-4739-01 1 201758873 201758873 G A NAV1 Missense_Mutation p.G1058S 0.08 deleterious(0) probably_damaging(0.997) TCGA-CN-4739-01 1 203696724 203696724 C T ATP2B4 Intron 0.21 TCGA-CN-4739-01 1 237993869 237993869 G A RYR2 Missense_Mutation p.D4899N 0.21 possibly_damaging(0.821) TCGA-CN-4739-01 1 242277263 242277263 T A PLD5 Silent p.I333I 0.28 TCGA-CN-4739-01 1 246704441 246704441 T C TFB2M Silent p.K361K 0.07 TCGA-CN-4739-01 1 246823595 246823595 G T CNST Missense_Mutation p.R644L 0.27 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 1 247163376 247163376 C T ZNF695 Missense_Mutation p.G2R 0.31 deleterious(0.03) possibly_damaging(0.887) TCGA-CN-4739-01 1 32671827 32671827 G A IQCC Missense_Mutation p.E119K 0.27 deleterious(0) probably_damaging(0.986) TCGA-CN-4739-01 1 40229411 40229411 G T BMP8B Nonsense_Mutation p.Y307* 0.62 TCGA-CN-4739-01 1 44201936 44201936 G T ST3GAL3 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CN-4739-01 1 44201937 44201937 G T ST3GAL3 Nonsense_Mutation p.G2* 0.21 TCGA-CN-4739-01 1 46976315 46976315 G A DMBX1 Missense_Mutation p.A108T 0.45 deleterious(0) probably_damaging(0.99) TCGA-CN-4739-01 1 52499375 52499375 T C KTI12 Missense_Mutation p.E20G 0.21 tolerated(0.06) benign(0.099) TCGA-CN-4739-01 1 65335021 65335021 T A JAK1 Missense_Mutation p.Q207L 0.28 deleterious(0.04) benign(0.035) TCGA-CN-4739-01 1 71437317 71437317 C A PTGER3 Intron 0.15 TCGA-CN-4739-01 1 82436043 82436043 G A LPHN2 Missense_Mutation p.A910T 0.22 deleterious(0) possibly_damaging(0.598) TCGA-CN-4739-01 20 30584546 30584546 G T XKR7 Missense_Mutation p.W342C 0.09 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 20 30784233 30784233 G A PLAGL2 3'UTR 0.24 TCGA-CN-4739-01 20 3209785 3209785 G A SLC4A11 Silent p.I701I 0.13 TCGA-CN-4739-01 20 34257408 34257408 T C NFS1 3'UTR 0.12 TCGA-CN-4739-01 20 485836 485836 G A CSNK2A1 Nonsense_Mutation p.R47* 0.20 TCGA-CN-4739-01 20 54824142 54824142 G A MC3R Silent p.A81A 0.06 TCGA-CN-4739-01 20 62197377 62197377 C T HELZ2 Missense_Mutation p.R933H 0.25 tolerated(0.06) benign(0.037) TCGA-CN-4739-01 20 9417742 9417742 T A PLCB4 Missense_Mutation p.S891T 0.09 tolerated(0.43) benign(0.006) TCGA-CN-4739-01 21 11098727 11098727 C A BAGE2 RNA 0.21 TCGA-CN-4739-01 21 39755448 39755448 G A ERG Silent p.P446P 0.31 TCGA-CN-4739-01 22 17619593 17619593 G A CECR5 Missense_Mutation p.T261I 0.26 deleterious(0.01) benign(0.359) TCGA-CN-4739-01 22 21989393 21989393 G A CCDC116 Silent p.P347P 0.21 TCGA-CN-4739-01 22 23237592 23237592 G T IGLL5 Silent p.P121P 0.15 TCGA-CN-4739-01 22 37769205 37769205 G A ELFN2 Silent p.H790H 0.07 TCGA-CN-4739-01 2 109527277 109527277 C T EDAR Missense_Mutation p.V229M 0.08 deleterious(0.04) benign(0.003) TCGA-CN-4739-01 2 11052775 11052775 C T KCNF1 Missense_Mutation p.R75C 0.17 deleterious(0.01) possibly_damaging(0.908) TCGA-CN-4739-01 2 138169326 138169326 G A THSD7B Missense_Mutation p.R948Q 0.04 tolerated(0.49) benign(0.417) TCGA-CN-4739-01 2 141116461 141116461 C G LRP1B Missense_Mutation p.C3729S 0.27 benign(0.152) TCGA-CN-4739-01 2 141299474 141299474 A T LRP1B Missense_Mutation p.S2421T 0.27 benign(0.153) TCGA-CN-4739-01 2 141643801 141643801 T A LRP1B Silent p.T1290T 0.27 TCGA-CN-4739-01 2 158283872 158283872 C T CYTIP Silent p.Q179Q 0.25 TCGA-CN-4739-01 2 168103683 168103683 G T XIRP2 Missense_Mutation p.R1927S 0.28 possibly_damaging(0.869) TCGA-CN-4739-01 2 208576752 208576752 G T CCNYL1 Silent p.A44A 0.40 TCGA-CN-4739-01 2 220369977 220369977 G A GMPPA Silent p.G216G 0.10 TCGA-CN-4739-01 2 223158889 223158889 G T PAX3 Silent p.R195R 0.10 TCGA-CN-4739-01 2 233320906 233320906 A G ALPI 5'UTR 0.35 TCGA-CN-4739-01 2 242576355 242576355 C A THAP4 Splice_Site p.X26_splice 0.33 TCGA-CN-4739-01 2 40366736 40366736 A G SLC8A1 Missense_Mutation p.F784L 0.25 deleterious(0.03) probably_damaging(0.965) TCGA-CN-4739-01 2 85581597 85581597 G A RETSAT Silent p.L12L 0.34 TCGA-CN-4739-01 3 108725922 108725922 A G MORC1 Missense_Mutation p.V574A 0.17 tolerated(0.53) benign(0.001) TCGA-CN-4739-01 3 109028054 109028054 T C DPPA2 Missense_Mutation p.D102G 0.03 tolerated(0.08) benign(0.007) TCGA-CN-4739-01 3 119135065 119135065 G A ARHGAP31 Missense_Mutation p.R1430Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-CN-4739-01 3 122437687 122437688 - A PARP14 Frame_Shift_Ins p.T1566Nfs*3 0.14 TCGA-CN-4739-01 3 127337882 127337882 G A MCM2 Missense_Mutation p.A676T 0.29 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 3 130095187 130095187 A T COL6A5 Missense_Mutation p.S59C 0.34 deleterious(0) probably_damaging(0.91) TCGA-CN-4739-01 3 160095273 160095273 G A IFT80 Silent p.H105H 0.32 TCGA-CN-4739-01 3 164700056 164700056 G A SI Missense_Mutation p.P1797L 0.27 tolerated(0.32) benign(0.001) TCGA-CN-4739-01 3 178922319 178922319 G C PIK3CA Missense_Mutation p.G363A 0.21 deleterious(0.01) probably_damaging(1) TCGA-CN-4739-01 3 186038379 186038379 A T DGKG 5'UTR 0.29 TCGA-CN-4739-01 3 41439704 41439704 T C ULK4 Missense_Mutation p.I1182V 0.20 deleterious(0.03) benign(0.002) TCGA-CN-4739-01 3 44442041 44442041 C T TCAIM Silent p.H360H 0.20 TCGA-CN-4739-01 3 64582637 64582637 G A ADAMTS9 Missense_Mutation p.R1350W 0.25 deleterious(0) probably_damaging(0.997) TCGA-CN-4739-01 3 65350391 65350391 G A MAGI1 Silent p.T1100T 0.22 TCGA-CN-4739-01 3 72495696 72495696 C A RYBP Nonsense_Mutation p.E126* 0.14 TCGA-CN-4739-01 3 73433986 73433986 G T PDZRN3 Missense_Mutation p.S577R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-4739-01 3 89521735 89521735 A G EPHA3 Missense_Mutation p.S938G 0.18 tolerated(0.11) probably_damaging(0.991) TCGA-CN-4739-01 3 98520447 98520447 C G DCBLD2 Missense_Mutation p.A573P 0.33 tolerated(0.22) benign(0.061) TCGA-CN-4739-01 4 109681435 109681435 C T ETNPPL Silent p.S28S 0.30 TCGA-CN-4739-01 4 118974943 118974943 A G NDST3 5'UTR 0.19 TCGA-CN-4739-01 4 119176903 119176903 A G NDST3 3'UTR 0.12 TCGA-CN-4739-01 4 151504465 151504465 C A MAB21L2 Missense_Mutation p.P95H 0.10 tolerated(0.07) probably_damaging(0.972) TCGA-CN-4739-01 4 169157507 169157507 G C DDX60 Missense_Mutation p.Q1477E 0.11 tolerated(0.81) benign(0.003) TCGA-CN-4739-01 4 184633772 184633772 A G TRAPPC11 Missense_Mutation p.D1126G 0.09 tolerated(0.47) benign(0.004) TCGA-CN-4739-01 4 20618727 20618727 C A SLIT2 Missense_Mutation p.P1348T 0.21 deleterious(0.02) benign(0.031) TCGA-CN-4739-01 4 41983735 41983735 C T DCAF4L1 5'UTR 0.17 TCGA-CN-4739-01 4 90857472 90857472 A T MMRN1 Nonsense_Mutation p.K881* 0.11 TCGA-CN-4739-01 4 95197554 95197554 G C SMARCAD1 Missense_Mutation p.A625P 0.20 deleterious(0) possibly_damaging(0.905) TCGA-CN-4739-01 5 101795457 101795457 T C SLCO6A1 Silent p.P308P 0.31 TCGA-CN-4739-01 5 129072905 129072905 G C ADAMTS19 Missense_Mutation p.K1206N 0.39 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-CN-4739-01 5 1330403 1330403 C T CLPTM1L Missense_Mutation p.A358T 0.33 tolerated(0.18) benign(0.067) TCGA-CN-4739-01 5 140515572 140515572 G A PCDHB5 Missense_Mutation p.G186R 0.26 tolerated_low_confidence(0.16) benign(0.003) TCGA-CN-4739-01 5 145979965 145979965 C A PPP2R2B Silent p.S286S 0.39 TCGA-CN-4739-01 5 176687152 176687152 G C NSD1 Missense_Mutation p.C1710S 0.31 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 5 24488015 24488015 C A CDH10 Silent p.T708T 0.20 TCGA-CN-4739-01 5 31983676 31983676 G A PDZD2 Missense_Mutation p.D298N 0.17 tolerated(0.07) possibly_damaging(0.776) TCGA-CN-4739-01 5 31983677 31983677 A C PDZD2 Missense_Mutation p.D298A 0.17 tolerated(0.1) benign(0.156) TCGA-CN-4739-01 5 3600720 3600721 - AG IRX1 Intron p.D440Efs*14 0.15 TCGA-CN-4739-01 5 38484967 38484967 A T LIFR Missense_Mutation p.V834E 0.56 tolerated(0.06) benign(0.02) TCGA-CN-4739-01 5 39341764 39341764 A G C9 Silent p.N74N 0.34 TCGA-CN-4739-01 6 105243517 105243517 T C HACE1 Missense_Mutation p.Q287R 0.17 tolerated(0.4) benign(0.001) TCGA-CN-4739-01 6 112671777 112671777 G A RFPL4B 3'UTR 0.24 TCGA-CN-4739-01 6 133014422 133014422 A T VNN1 Missense_Mutation p.N189K 0.18 deleterious(0) possibly_damaging(0.745) TCGA-CN-4739-01 6 24596542 24596542 C G KIAA0319 Missense_Mutation p.M120I 0.48 tolerated(0.36) benign(0.007) TCGA-CN-4739-01 6 26056327 26056327 C A HIST1H1C Missense_Mutation p.K110N 0.04 deleterious(0.01) possibly_damaging(0.459) TCGA-CN-4739-01 6 27806588 27806588 A G HIST1H2BN Missense_Mutation p.H50R 0.23 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-CN-4739-01 6 27834588 27834588 G A HIST1H1B 3'UTR 0.25 TCGA-CN-4739-01 6 39602685 39602685 T C KIF6 Missense_Mutation p.N150S 0.25 deleterious(0) probably_damaging(0.997) TCGA-CN-4739-01 6 46806851 46806851 T C MEP1A Missense_Mutation p.L740P 0.27 deleterious(0.05) possibly_damaging(0.52) TCGA-CN-4739-01 6 74191953 74191953 G T MTO1 Missense_Mutation p.R524L 0.21 deleterious(0) probably_damaging(0.951) TCGA-CN-4739-01 7 108205353 108205353 C T THAP5 Missense_Mutation p.G157E 0.21 tolerated(1) benign(0.001) TCGA-CN-4739-01 7 126173263 126173263 A T GRM8 Missense_Mutation p.Y725N 0.32 deleterious(0) probably_damaging(0.977) TCGA-CN-4739-01 7 140380909 140380909 G C ADCK2 Missense_Mutation p.R426P 0.26 deleterious(0.02) benign(0.259) TCGA-CN-4739-01 7 149431145 149431145 C A KRBA1 3'UTR 0.14 TCGA-CN-4739-01 7 2559807 2559807 C T LFNG Silent p.R104R 0.44 TCGA-CN-4739-01 7 34724268 34724268 C T NPSR1 Silent p.T84T 0.23 TCGA-CN-4739-01 7 37298793 37298793 C A ELMO1 Missense_Mutation p.G136C 0.23 deleterious(0) probably_damaging(0.993) TCGA-CN-4739-01 7 37780085 37780085 C T GPR141 Silent p.G30G 0.25 TCGA-CN-4739-01 7 38313237 38313237 C A TRGJP Missense_Mutation p.L4F 0.21 unknown(0) TCGA-CN-4739-01 7 48390265 48390265 C A ABCA13 Missense_Mutation p.N3410K 0.17 possibly_damaging(0.88) TCGA-CN-4739-01 7 72722501 72722501 G C NSUN5 Missense_Mutation p.A48G 0.21 tolerated(0.09) benign(0.211) TCGA-CN-4739-01 7 90419941 90419941 G T CDK14 Missense_Mutation p.G155V 0.19 deleterious(0) probably_damaging(1) TCGA-CN-4739-01 7 91709455 91709455 G C AKAP9 Missense_Mutation p.E2670Q 0.19 benign(0.148) TCGA-CN-4739-01 7 95222138 95222138 G A PDK4 Missense_Mutation p.L155F 0.22 deleterious(0) probably_damaging(0.953) TCGA-CN-4739-01 7 99764268 99764268 G A GAL3ST4 Missense_Mutation p.R96C 0.12 deleterious(0.02) possibly_damaging(0.66) TCGA-CN-4739-01 8 10468035 10468035 C G RP1L1 Missense_Mutation p.E1191D 0.38 possibly_damaging(0.739) TCGA-CN-4739-01 8 10584020 10584020 C - SOX7 Frame_Shift_Del p.G184Afs*4 0.16 TCGA-CN-4739-01 8 110412536 110412536 C A PKHD1L1 Missense_Mutation p.A415D 0.06 tolerated(0.5) benign(0.381) TCGA-CN-4739-01 8 113395804 113395804 C A CSMD3 Missense_Mutation p.S2008I 0.12 deleterious(0) possibly_damaging(0.886) TCGA-CN-4739-01 8 118185000 118185000 T C SLC30A8 3'UTR 0.24 TCGA-CN-4739-01 8 133141445 133141445 T A KCNQ3 3'UTR 0.11 TCGA-CN-4739-01 8 3059159 3059159 G A CSMD1 Silent p.L1691L 0.13 TCGA-CN-4739-01 8 30949360 30949360 C T WRN Missense_Mutation p.P615L 0.12 deleterious(0) possibly_damaging(0.904) TCGA-CN-4739-01 8 37914778 37914778 G T EIF4EBP1 Missense_Mutation p.G109C 0.19 deleterious(0) probably_damaging(0.946) TCGA-CN-4739-01 8 41530294 41530294 G A ANK1 Silent p.D1599D 0.10 TCGA-CN-4739-01 8 52321119 52321119 A C PXDNL Missense_Mutation p.L1022R 0.22 deleterious(0) probably_damaging(0.997) TCGA-CN-4739-01 8 53085133 53085133 C A ST18 Missense_Mutation p.M96I 0.30 tolerated(0.43) benign(0) TCGA-CN-4739-01 8 55540810 55540810 A G RP1 Silent p.T1456T 0.23 TCGA-CN-4739-01 8 57890701 57890701 T G IMPAD1 Missense_Mutation p.D185A 0.03 deleterious(0.02) benign(0.314) TCGA-CN-4739-01 8 63492237 63492237 T C NKAIN3 Splice_Site p.X64_splice 0.28 TCGA-CN-4739-01 8 75756223 75756223 A G PI15 Missense_Mutation p.D94G 0.21 deleterious(0.01) benign(0.064) TCGA-CN-4739-01 8 97797214 97797214 A T CPQ Missense_Mutation p.K30M 0.29 tolerated(0.14) benign(0.012) TCGA-CN-4739-01 9 114090596 114090596 A T OR2K2 Missense_Mutation p.L40M 0.32 deleterious(0.02) possibly_damaging(0.893) TCGA-CN-4739-01 9 125391138 125391138 C A OR1B1 Missense_Mutation p.R226L 0.21 tolerated(0.36) possibly_damaging(0.573) TCGA-CN-4739-01 9 125797359 125797359 G T GPR21 Nonsense_Mutation p.G172* 0.15 TCGA-CN-4739-01 9 127089616 127089616 G A NEK6 Splice_Site p.X206_splice 0.30 TCGA-CN-4739-01 9 134404388 134404388 C G UCK1 Missense_Mutation p.Q187H 0.36 tolerated(0.08) benign(0.056) TCGA-CN-4739-01 9 138377302 138377302 G T PPP1R26 Nonsense_Mutation p.E316* 0.14 TCGA-CN-4739-01 9 21216750 21216750 T A IFNA16 Missense_Mutation p.L185F 0.28 tolerated(0.06) benign(0.23) TCGA-CN-4739-01 9 2718222 2718222 C G KCNV2 Silent p.V161V 0.16 TCGA-CN-4739-01 9 78749092 78749092 G A PCSK5 Missense_Mutation p.A426T 0.04 deleterious(0) possibly_damaging(0.821) TCGA-CN-4739-01 X 130416470 130416470 C T IGSF1 Nonsense_Mutation p.W398* 0.52 TCGA-CN-4739-01 X 134421766 134421766 T A ZNF75D Missense_Mutation p.K279I 0.49 deleterious(0) benign(0.096) TCGA-CN-4739-01 X 139866496 139866496 G A CDR1 Silent p.D12D 0.53 TCGA-CN-4739-01 X 19725001 19725001 C G SH3KBP1 Missense_Mutation p.E130Q 0.42 deleterious(0) probably_damaging(0.994) TCGA-CN-4739-01 X 34962575 34962575 C A FAM47B Missense_Mutation p.R543S 0.45 tolerated(0.3) benign(0.066) TCGA-CN-4739-01 X 37285132 37285132 G A PRRG1 Missense_Mutation p.R17H 0.07 deleterious(0) possibly_damaging(0.874) TCGA-CN-4739-01 X 49107877 49107877 A C FOXP3 Missense_Mutation p.V405G 0.11 deleterious(0) possibly_damaging(0.794) TCGA-CN-4739-01 X 50144082 50144082 C T DGKK RNA 0.10 TCGA-CN-4739-01 X 69563610 69563610 G T KIF4A Missense_Mutation p.A442S 0.41 tolerated(0.08) possibly_damaging(0.873) TCGA-CN-4739-01 X 70618460 70618460 A G TAF1 Missense_Mutation p.E1240G 0.12 deleterious(0) probably_damaging(0.987) TCGA-CN-4739-01 X 78616844 78616844 G T ITM2A Missense_Mutation p.R229S 0.43 deleterious(0.01) benign(0.1) TCGA-CN-4739-01 X 86068180 86068180 G T DACH2 Missense_Mutation p.Q479H 0.45 deleterious(0.05) probably_damaging(0.999) TCGA-CN-4739-01 X 88009098 88009098 G T CPXCR1 Missense_Mutation p.R228I 0.48 deleterious(0.05) possibly_damaging(0.883) TCGA-CN-4739-01 X 91134064 91134064 C A PCDH11X Missense_Mutation p.A942D 0.44 deleterious(0.04) probably_damaging(0.97) TCGA-CN-4740-01 10 101914691 101914691 C T ERLIN1 Missense_Mutation p.A251T 0.10 tolerated(0.43) benign(0.009) TCGA-CN-4740-01 10 121658241 121658241 C G SEC23IP Missense_Mutation p.L156V 0.09 tolerated(0.29) benign(0.187) TCGA-CN-4740-01 10 133753685 133753685 C G PPP2R2D Missense_Mutation p.L86V 0.13 deleterious(0.01) possibly_damaging(0.792) TCGA-CN-4740-01 10 27323939 27323939 C T ANKRD26 Missense_Mutation p.R1147Q 0.09 tolerated(0.11) benign(0.148) TCGA-CN-4740-01 10 60558291 60558291 C T BICC1 Missense_Mutation p.P500L 0.07 tolerated(0.41) benign(0.024) TCGA-CN-4740-01 10 6139143 6139143 C T RBM17 Nonsense_Mutation p.Q39* 0.09 TCGA-CN-4740-01 10 71142518 71142518 C T HK1 Missense_Mutation p.S518F 0.09 deleterious(0) probably_damaging(0.95) TCGA-CN-4740-01 10 88988216 88988216 C T NUTM2A Silent p.C193C 0.08 TCGA-CN-4740-01 10 95134522 95134525 CTTC TTTTT MYOF Frame_Shift_Ins p.E766Kfs*9 0.13 TCGA-CN-4740-01 10 97366293 97366293 C T ALDH18A1 3'UTR 0.36 TCGA-CN-4740-01 10 97366358 97366358 C T ALDH18A1 3'UTR 0.11 TCGA-CN-4740-01 11 129758675 129758675 C A NFRKB Missense_Mutation p.D64Y 0.06 deleterious(0) unknown(0) TCGA-CN-4740-01 11 2434717 2434717 G A TRPM5 Silent p.L664L 0.20 TCGA-CN-4740-01 11 55944190 55944190 G A OR5J2 Missense_Mutation p.V33M 0.18 tolerated(0.18) benign(0.064) TCGA-CN-4740-01 11 59603454 59603454 G T GIF Missense_Mutation p.S300R 0.09 tolerated(0.52) benign(0.006) TCGA-CN-4740-01 11 62358968 62358968 C T TUT1 Missense_Mutation p.R35K 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-CN-4740-01 11 65273274 65273274 C G MALAT1 RNA 0.29 TCGA-CN-4740-01 11 73689376 73689376 C A UCP2 Missense_Mutation p.K16N 0.22 tolerated(0.05) benign(0.366) TCGA-CN-4740-01 11 9750966 9750966 C T SWAP70 Missense_Mutation p.S289L 0.08 deleterious(0) probably_damaging(0.981) TCGA-CN-4740-01 12 102572458 102572458 C G PARPBP Missense_Mutation p.A365G 0.12 tolerated(0.11) probably_damaging(1) TCGA-CN-4740-01 12 13906692 13906692 A G GRIN2B Missense_Mutation p.I190T 0.24 tolerated(0.9) probably_damaging(0.914) TCGA-CN-4740-01 12 53776257 53776258 AT - SP1 Frame_Shift_Del p.I176Pfs*7 0.10 TCGA-CN-4740-01 12 56975652 56975652 T C RBMS2 Silent p.A256A 0.17 TCGA-CN-4740-01 12 57626045 57626045 C G SHMT2 Missense_Mutation p.I188M 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-CN-4740-01 12 57858619 57858619 C T GLI1 Silent p.G119G 0.15 TCGA-CN-4740-01 12 83359345 83359345 A G TMTC2 Missense_Mutation p.Y564C 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-CN-4740-01 12 86198832 86198832 T G RASSF9 Missense_Mutation p.K319T 0.10 deleterious(0.02) benign(0.169) TCGA-CN-4740-01 13 21742409 21742409 C T SKA3 Missense_Mutation p.R154H 0.12 deleterious(0.04) benign(0.378) TCGA-CN-4740-01 13 36900685 36900686 - A SPG20 Intron 0.15 TCGA-CN-4740-01 13 49833572 49833572 C A CDADC1 Missense_Mutation p.L115I 0.30 tolerated(0.52) benign(0.078) TCGA-CN-4740-01 14 25043576 25043576 C T CTSG Missense_Mutation p.D157N 0.13 tolerated(0.56) benign(0.053) TCGA-CN-4740-01 14 34145431 34145431 C G NPAS3 Silent p.G191G 0.18 TCGA-CN-4740-01 14 58831004 58831004 G C ARID4A Missense_Mutation p.D733H 0.09 tolerated_low_confidence(0.09) possibly_damaging(0.627) TCGA-CN-4740-01 14 86089701 86089701 G A FLRT2 Missense_Mutation p.D615N 0.22 tolerated(0.3) possibly_damaging(0.484) TCGA-CN-4740-01 15 22332774 22332774 C A RP11-69H14.6 Intron 0.10 TCGA-CN-4740-01 15 25514837 25514837 C T SNORD115-48 5'Flank 0.27 TCGA-CN-4740-01 15 33936544 33936544 C G RYR3 Missense_Mutation p.Q1197E 0.20 probably_damaging(0.996) TCGA-CN-4740-01 15 42116702 42116702 C T MAPKBP1 Nonsense_Mutation p.Q1418* 0.17 TCGA-CN-4740-01 15 42457994 42457994 C T VPS39 Silent p.P567P 0.09 TCGA-CN-4740-01 15 71124347 71124347 C T LARP6 3'UTR 0.21 TCGA-CN-4740-01 15 85384080 85384080 G T ALPK3 Missense_Mutation p.V726L 0.22 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-CN-4740-01 15 91347415 91347415 G C BLM Missense_Mutation p.E1193Q 0.07 deleterious(0) probably_damaging(0.969) TCGA-CN-4740-01 15 99500474 99500474 G A IGF1R Missense_Mutation p.V1303I 0.18 tolerated(1) benign(0.002) TCGA-CN-4740-01 16 23428348 23428348 C G COG7 Missense_Mutation p.R411T 0.06 tolerated(0.19) benign(0.003) TCGA-CN-4740-01 16 3820844 3820844 G C CREBBP Silent p.L869L 0.14 TCGA-CN-4740-01 16 426741 426741 C A TMEM8A Missense_Mutation p.G236V 0.30 deleterious(0.04) benign(0.066) TCGA-CN-4740-01 16 57829031 57829031 G C KIFC3 Silent p.V65V 0.09 TCGA-CN-4740-01 16 70841774 70841774 C T HYDIN Silent p.K5025K 0.05 TCGA-CN-4740-01 16 84093017 84093017 C T MBTPS1 Silent p.R907R 0.07 TCGA-CN-4740-01 17 15611559 15611559 C T ZNF286A Missense_Mutation p.S111L 0.16 tolerated(0.26) benign(0.133) TCGA-CN-4740-01 17 2237843 2237843 T C TSR1 Missense_Mutation p.I302V 0.22 tolerated(0.25) benign(0.074) TCGA-CN-4740-01 17 27896346 27896346 G A TP53I13 Missense_Mutation p.R51K 0.09 tolerated_low_confidence(0.12) benign(0.034) TCGA-CN-4740-01 17 27958830 27958830 C G SSH2 Missense_Mutation p.E1101Q 0.09 tolerated_low_confidence(0.18) benign(0.014) TCGA-CN-4740-01 17 33770858 33770858 G A SLFN13 Missense_Mutation p.S383F 0.09 deleterious(0.03) benign(0.08) TCGA-CN-4740-01 17 37563769 37563769 C T MED1 Missense_Mutation p.E1569K 0.22 deleterious_low_confidence(0) unknown(0) TCGA-CN-4740-01 17 57289009 57289009 C G SMG8 Missense_Mutation p.R533G 0.08 deleterious(0.04) possibly_damaging(0.9) TCGA-CN-4740-01 17 57290700 57290700 G A SMG8 Missense_Mutation p.R839Q 0.11 deleterious(0.04) probably_damaging(0.92) TCGA-CN-4740-01 17 67149444 67149444 A T ABCA10 Splice_Site p.X1379_splice 0.08 TCGA-CN-4740-01 17 71166496 71166496 C A SSTR2 Missense_Mutation p.D346E 0.26 tolerated(0.7) benign(0.002) TCGA-CN-4740-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.20 TCGA-CN-4740-01 17 7579591 7579591 C T TP53 Splice_Site p.X33_splice 0.08 TCGA-CN-4740-01 17 76570998 76570998 C T DNAH17 Missense_Mutation p.D48N 0.16 benign(0.018) TCGA-CN-4740-01 17 79058642 79058642 C T BAIAP2 Silent p.L76L 0.10 TCGA-CN-4740-01 18 2732357 2732357 A T SMCHD1 Missense_Mutation p.K1048M 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-CN-4740-01 18 55218580 55218580 A G FECH Silent p.A374A 0.07 TCGA-CN-4740-01 18 56203584 56203584 G A ALPK2 Silent p.L1279L 0.11 TCGA-CN-4740-01 18 56203904 56203904 G A ALPK2 Missense_Mutation p.T1172M 0.13 tolerated(0.14) benign(0.001) TCGA-CN-4740-01 19 10664771 10664771 C T KRI1 Silent p.R662R 0.08 TCGA-CN-4740-01 19 10665764 10665764 C G KRI1 Missense_Mutation p.E600Q 0.08 tolerated(0.08) benign(0.197) TCGA-CN-4740-01 19 12817445 12817445 T A TNPO2 Missense_Mutation p.M479L 0.19 tolerated(0.27) benign(0.006) TCGA-CN-4740-01 19 36562559 36562559 C T WDR62 Silent p.L328L 0.09 TCGA-CN-4740-01 19 42471887 42471887 C T ATP1A3 Missense_Mutation p.E963K 0.12 tolerated(0.24) probably_damaging(0.998) TCGA-CN-4740-01 19 58899511 58899511 G C RPS5 Missense_Mutation p.E3Q 0.12 deleterious(0.02) benign(0.015) TCGA-CN-4740-01 19 59028386 59028386 C T ZBTB45 Missense_Mutation p.D219N 0.10 tolerated(0.5) benign(0.173) TCGA-CN-4740-01 19 59067372 59067372 C A UBE2M 3'UTR 0.36 TCGA-CN-4740-01 19 7809920 7809920 G A CD209 Silent p.F269F 0.13 TCGA-CN-4740-01 19 8376298 8376298 G A NDUFA7 3'UTR 0.14 TCGA-CN-4740-01 1 101339860 101339860 C A EXTL2 Missense_Mutation p.V211L 0.10 deleterious(0.01) benign(0.11) TCGA-CN-4740-01 1 111738609 111738609 G A DENND2D Nonsense_Mutation p.R192* 0.08 TCGA-CN-4740-01 1 1277124 1277124 G A DVL1 Silent p.D176D 0.16 TCGA-CN-4740-01 1 154227358 154227358 C T UBAP2L Missense_Mutation p.S634F 0.10 deleterious(0.01) unknown(0) TCGA-CN-4740-01 1 154310237 154310237 G A ATP8B2 Intron 0.12 TCGA-CN-4740-01 1 16074093 16074093 C T TMEM82 Missense_Mutation p.S333L 0.08 deleterious(0.05) unknown(0) TCGA-CN-4740-01 1 180064865 180064865 C G CEP350 Missense_Mutation p.Q2907E 0.08 benign(0.003) TCGA-CN-4740-01 1 180885439 180885439 C A KIAA1614 Missense_Mutation p.P67H 0.10 deleterious(0) possibly_damaging(0.874) TCGA-CN-4740-01 1 183532571 183532571 C T NCF2 Silent p.L392L 0.06 TCGA-CN-4740-01 1 203134708 203134708 G T ADORA1 Missense_Mutation p.D221Y 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-CN-4740-01 1 203311480 203311480 G A FMOD Silent p.I374I 0.12 TCGA-CN-4740-01 1 21560052 21560052 G A ECE1 Nonsense_Mutation p.Q557* 0.15 TCGA-CN-4740-01 1 222717278 222717278 C T HHIPL2 Missense_Mutation p.R192H 0.08 tolerated(0.19) benign(0.018) TCGA-CN-4740-01 1 235324586 235324586 A G RBM34 5'UTR 0.10 TCGA-CN-4740-01 1 248845518 248845518 G T OR14I1 Missense_Mutation p.L30M 0.06 deleterious(0) probably_damaging(0.966) TCGA-CN-4740-01 1 33292423 33292423 C A S100PBP Silent p.I241I 0.17 TCGA-CN-4740-01 1 39945527 39945527 C G MACF1 Missense_Mutation p.S5251C 0.04 probably_damaging(0.967) TCGA-CN-4740-01 1 46736347 46736347 C G RAD54L Missense_Mutation p.F353L 0.06 deleterious(0) probably_damaging(0.986) TCGA-CN-4740-01 1 63063358 63063358 G A ANGPTL3 Missense_Mutation p.D41N 0.15 deleterious(0.03) benign(0.32) TCGA-CN-4740-01 1 70504158 70504158 C T LRRC7 Missense_Mutation p.T846I 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CN-4740-01 1 985677 985677 G C AGRN Silent p.L1648L 0.11 TCGA-CN-4740-01 20 10625009 10625009 G A JAG1 Missense_Mutation p.P790S 0.09 deleterious(0) probably_damaging(0.984) TCGA-CN-4740-01 20 18794470 18794470 G C SCP2D1 Missense_Mutation p.R4T 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-CN-4740-01 20 31572920 31572920 C T SUN5 Silent p.Q323Q 0.09 TCGA-CN-4740-01 20 35696492 35696492 C T RBL1 Missense_Mutation p.E130K 0.10 tolerated(0.19) probably_damaging(1) TCGA-CN-4740-01 20 3673302 3673302 C T SIGLEC1 Missense_Mutation p.R1299H 0.18 tolerated(0.23) benign(0.179) TCGA-CN-4740-01 20 41408885 41408885 C T PTPRT Missense_Mutation p.E181K 0.08 deleterious(0) possibly_damaging(0.542) TCGA-CN-4740-01 21 15537706 15537706 G C LIPI Missense_Mutation p.Q268E 0.08 tolerated(0.75) benign(0) TCGA-CN-4740-01 22 18020172 18020172 G C CECR2 Missense_Mutation p.D502H 0.33 deleterious(0) probably_damaging(1) TCGA-CN-4740-01 22 20049075 20049075 G A TANGO2 Silent p.A158A 0.14 TCGA-CN-4740-01 22 21347982 21347982 A T LZTR1 Missense_Mutation p.E431V 0.22 deleterious(0.01) benign(0.236) TCGA-CN-4740-01 22 30953272 30953272 C T GAL3ST1 Silent p.P36P 0.07 TCGA-CN-4740-01 22 42456988 42456988 C T NAGA Missense_Mutation p.M347I 0.11 tolerated(0.34) benign(0.002) TCGA-CN-4740-01 22 46787152 46787152 C A CELSR1 Missense_Mutation p.A2061S 0.10 tolerated(0.24) possibly_damaging(0.732) TCGA-CN-4740-01 22 50898432 50898432 G C SBF1 Missense_Mutation p.S1147C 0.12 deleterious(0.01) possibly_damaging(0.678) TCGA-CN-4740-01 2 103353179 103353179 C G MFSD9 Missense_Mutation p.E31Q 0.09 tolerated_low_confidence(0.5) benign(0.002) TCGA-CN-4740-01 2 128865573 128865573 C G UGGT1 Silent p.L113L 0.12 TCGA-CN-4740-01 2 166868758 166868758 G A SCN1A Missense_Mutation p.T1247M 0.22 deleterious(0.01) possibly_damaging(0.856) TCGA-CN-4740-01 2 179497064 179497064 C T TTN Silent p.E14519E 0.16 TCGA-CN-4740-01 2 179500746 179500746 G A TTN Missense_Mutation p.T13851I 0.09 TCGA-CN-4740-01 2 182543116 182543116 G A NEUROD1 Missense_Mutation p.R158C 0.05 deleterious(0) probably_damaging(0.917) TCGA-CN-4740-01 2 219736445 219736445 C T WNT6 Silent p.D180D 0.09 TCGA-CN-4740-01 2 220161532 220161532 C T PTPRN Missense_Mutation p.R750H 0.06 deleterious(0) probably_damaging(1) TCGA-CN-4740-01 2 27279594 27279594 G C AGBL5 Missense_Mutation p.R490T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4740-01 2 44457495 44457495 A G PPM1B Intron 0.25 TCGA-CN-4740-01 2 55589533 55589533 C G CCDC88A Missense_Mutation p.D180H 0.08 deleterious(0) benign(0.402) TCGA-CN-4740-01 2 56144916 56144916 C T EFEMP1 Missense_Mutation p.R134Q 0.13 tolerated(0.49) benign(0.049) TCGA-CN-4740-01 3 138178826 138178826 G A ESYT3 Missense_Mutation p.V230M 0.17 deleterious(0.03) benign(0.352) TCGA-CN-4740-01 3 157004456 157004456 T A VEPH1 Missense_Mutation p.D673V 0.07 deleterious(0) possibly_damaging(0.821) TCGA-CN-4740-01 3 182925545 182925545 C T MCF2L2 Missense_Mutation p.D855N 0.19 tolerated(0.06) benign(0.044) TCGA-CN-4740-01 3 47619197 47619197 C T CSPG5 Missense_Mutation p.G107S 0.11 tolerated_low_confidence(0.12) benign(0.212) TCGA-CN-4740-01 3 97596124 97596124 C T CRYBG3 Missense_Mutation p.T81M 0.11 tolerated_low_confidence(0.15) benign(0.003) TCGA-CN-4740-01 3 99515023 99515023 G A COL8A1 3'UTR 0.10 TCGA-CN-4740-01 4 129864201 129864201 C G SCLT1 Missense_Mutation p.E528Q 0.05 deleterious(0.01) possibly_damaging(0.897) TCGA-CN-4740-01 4 138452188 138452188 G C PCDH18 Missense_Mutation p.P352R 0.17 deleterious(0) probably_damaging(1) TCGA-CN-4740-01 4 166254491 166254491 G T MSMO1 Splice_Site 0.05 TCGA-CN-4740-01 4 186544853 186544853 G C SORBS2 Missense_Mutation p.S673C 0.14 deleterious(0.02) possibly_damaging(0.849) TCGA-CN-4740-01 4 186545169 186545169 C T SORBS2 Missense_Mutation p.E568K 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-CN-4740-01 4 41748274 41748274 G A PHOX2B Silent p.A165A 0.16 TCGA-CN-4740-01 4 57190422 57190422 G A KIAA1211 Silent p.T1177T 0.27 TCGA-CN-4740-01 4 68725342 68725342 G A TMPRSS11D Silent p.F21F 0.05 TCGA-CN-4740-01 4 71507743 71507743 T C ENAM Silent p.F200F 0.18 TCGA-CN-4740-01 5 139422017 139422017 G A NRG2 Missense_Mutation p.P213L 0.27 deleterious(0.01) probably_damaging(0.983) TCGA-CN-4740-01 5 140530097 140530097 G T PCDHB6 Nonsense_Mutation p.E87* 0.11 TCGA-CN-4740-01 5 140530481 140530481 G C PCDHB6 Missense_Mutation p.D215H 0.06 deleterious(0) probably_damaging(1) TCGA-CN-4740-01 5 140810927 140810927 G A PCDHGA12 Missense_Mutation p.D201N 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-4740-01 5 140812206 140812206 G A PCDHGA12 Missense_Mutation p.R627H 0.08 deleterious_low_confidence(0.01) benign(0.262) TCGA-CN-4740-01 5 160097667 160097667 G T ATP10B Missense_Mutation p.Q160K 0.13 tolerated(1) benign(0.002) TCGA-CN-4740-01 5 167674088 167674088 C T TENM2 Silent p.V2048V 0.10 TCGA-CN-4740-01 5 177697340 177697340 G A COL23A1 Missense_Mutation p.P156S 0.15 deleterious(0) unknown(0) TCGA-CN-4740-01 5 40972634 40972634 T G C7 Missense_Mutation p.F671C 0.09 deleterious(0.01) benign(0.076) TCGA-CN-4740-01 5 5200364 5200364 A G ADAMTS16 Missense_Mutation p.Y478C 0.09 deleterious(0) probably_damaging(0.997) TCGA-CN-4740-01 6 160329056 160329056 G A MAS1 3'UTR 0.17 TCGA-CN-4740-01 6 167427050 167427050 G A FGFR1OP Missense_Mutation p.D192N 0.06 tolerated(0.41) benign(0.001) TCGA-CN-4740-01 6 26045748 26045748 A T HIST1H3C Missense_Mutation p.K37M 0.16 deleterious_low_confidence(0.01) benign(0.164) TCGA-CN-4740-01 6 26124629 26124629 G C HIST1H2AC Missense_Mutation p.E57Q 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CN-4740-01 6 28333970 28333970 C T ZKSCAN3 Nonsense_Mutation p.Q509* 0.08 TCGA-CN-4740-01 6 88127960 88127960 C T C6ORF165 Silent p.T222T 0.10 TCGA-CN-4740-01 6 90387317 90387317 C T MDN1 Missense_Mutation p.V4171I 0.14 benign(0.091) TCGA-CN-4740-01 7 103191542 103191542 C T RELN Missense_Mutation p.V2092M 0.12 deleterious(0) benign(0.439) TCGA-CN-4740-01 7 104782508 104782509 - A SRPK2 Frame_Shift_Ins p.S497Ffs*3 0.21 TCGA-CN-4740-01 7 107710183 107710183 T A LAMB4 Missense_Mutation p.M758L 0.20 tolerated(0.35) benign(0.002) TCGA-CN-4740-01 7 149981865 149981865 C T ACTR3C Missense_Mutation p.D181N 0.11 deleterious(0) probably_damaging(0.996) TCGA-CN-4740-01 7 150325563 150325563 C A GIMAP6 Silent p.L41L 0.08 TCGA-CN-4740-01 7 15427042 15427042 C T AGMO Missense_Mutation p.E316K 0.06 tolerated(0.05) benign(0.037) TCGA-CN-4740-01 7 37916515 37916515 G C NME8 Missense_Mutation p.M300I 0.09 tolerated(0.84) benign(0) TCGA-CN-4740-01 7 92838082 92838082 G T HEPACAM2 Missense_Mutation p.H275N 0.04 tolerated(1) benign(0) TCGA-CN-4740-01 7 98608706 98608706 G A TRRAP Missense_Mutation p.S3643N 0.31 benign(0.016) TCGA-CN-4740-01 7 99707583 99707583 C T TAF6 Silent p.Q461Q 0.10 TCGA-CN-4740-01 7 99711299 99711299 C T TAF6 Missense_Mutation p.D150N 0.11 deleterious(0.04) benign(0.016) TCGA-CN-4740-01 7 99711329 99711329 C T TAF6 Missense_Mutation p.E140K 0.14 deleterious(0.04) probably_damaging(0.985) TCGA-CN-4740-01 7 99711569 99711569 C T TAF6 Silent p.L92L 0.13 TCGA-CN-4740-01 7 99711749 99711749 G A TAF6 Silent p.I65I 0.15 TCGA-CN-4740-01 7 99711776 99711776 C T TAF6 Missense_Mutation p.M56I 0.13 tolerated(1) benign(0.032) TCGA-CN-4740-01 7 99711834 99711834 C T TAF6 Missense_Mutation p.R37K 0.10 tolerated_low_confidence(0.38) benign(0.001) TCGA-CN-4740-01 8 121228727 121228727 G A COL14A1 Missense_Mutation p.E579K 0.03 tolerated(0.07) probably_damaging(0.998) TCGA-CN-4740-01 8 121243789 121243789 G A COL14A1 Missense_Mutation p.D761N 0.07 tolerated(0.59) benign(0.001) TCGA-CN-4740-01 8 144332641 144332641 G A ZFP41 3'UTR 0.20 TCGA-CN-4740-01 8 144803252 144803252 G C MAPK15 Missense_Mutation p.E334Q 0.10 tolerated(0.2) benign(0.327) TCGA-CN-4740-01 9 14824903 14824903 C T FREM1 Missense_Mutation p.E657K 0.13 deleterious(0.03) benign(0.178) TCGA-CN-4740-01 9 74365204 74365204 G A TMEM2 Missense_Mutation p.P29L 0.14 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CN-4740-01 9 74828816 74828816 C T GDA Missense_Mutation p.R163W 0.19 deleterious(0) probably_damaging(1) TCGA-CN-4740-01 X 104464803 104464803 C A TEX13A Silent p.L93L 0.18 TCGA-CN-4740-01 X 138880468 138880468 T C ATP11C Missense_Mutation p.Y277C 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-CN-4740-01 X 20190890 20190890 C T RPS6KA3 Missense_Mutation p.A443T 0.23 tolerated(0.32) benign(0.003) TCGA-CN-4740-01 X 30578442 30578442 C G CXorf21 Missense_Mutation p.E11Q 0.13 tolerated(0.16) benign(0) TCGA-CN-4740-01 X 38156556 38156556 G T RPGR Silent p.L465L 0.07 TCGA-CN-4741-01 10 103343136 103343136 T C POLL Intron 0.53 TCGA-CN-4741-01 10 105330708 105330708 C T NEURL1 Silent p.S55S 0.37 TCGA-CN-4741-01 10 121586186 121586186 C G INPP5F Missense_Mutation p.Q765E 0.06 tolerated(0.18) benign(0.094) TCGA-CN-4741-01 10 133948575 133948575 C T JAKMIP3 Missense_Mutation p.R294C 0.37 deleterious(0) probably_damaging(1) TCGA-CN-4741-01 10 33552574 33552574 C T NRP1 Missense_Mutation p.V220I 0.17 deleterious(0.02) benign(0.209) TCGA-CN-4741-01 10 74645514 74645514 C T MCU Silent p.D330D 0.19 TCGA-CN-4741-01 11 118376025 118376025 C G KMT2A Missense_Mutation p.P3140A 0.04 benign(0.036) TCGA-CN-4741-01 11 34470887 34470887 G C CAT Missense_Mutation p.R72T 0.08 deleterious(0) probably_damaging(1) TCGA-CN-4741-01 11 36596040 36596040 C T RAG1 Missense_Mutation p.R396C 0.29 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CN-4741-01 11 70007338 70007338 G T ANO1 Missense_Mutation p.M550I 0.31 tolerated(0.19) benign(0.026) TCGA-CN-4741-01 11 85977185 85977185 T C EED Missense_Mutation p.W263R 0.07 deleterious(0) probably_damaging(1) TCGA-CN-4741-01 12 13224219 13224219 C T KIAA1467 Silent p.Y471Y 0.04 TCGA-CN-4741-01 12 34179707 34179707 C G ALG10 Missense_Mutation p.L427V 0.35 tolerated(0.13) possibly_damaging(0.649) TCGA-CN-4741-01 12 49443899 49443899 C A KMT2D Nonsense_Mutation p.E1158* 0.35 TCGA-CN-4741-01 12 64818958 64818958 G T XPOT Missense_Mutation p.R483L 0.03 tolerated(0.15) benign(0.016) TCGA-CN-4741-01 12 66742828 66742828 C T GRIP1 Missense_Mutation p.E1068K 0.08 deleterious_low_confidence(0.02) benign(0.108) TCGA-CN-4741-01 12 6833912 6833912 C T COPS7A Silent p.L30L 0.05 TCGA-CN-4741-01 12 81532986 81532986 C A ACSS3 Missense_Mutation p.A241E 0.41 deleterious(0) probably_damaging(0.999) TCGA-CN-4741-01 12 85255331 85255331 G C SLC6A15 3'UTR 0.07 TCGA-CN-4741-01 12 86199550 86199550 T C RASSF9 Missense_Mutation p.I80V 0.43 tolerated(1) benign(0.001) TCGA-CN-4741-01 13 36241642 36241642 C T NBEA Nonsense_Mutation p.R2845* 0.14 TCGA-CN-4741-01 13 41533074 41533074 G C ELF1 Missense_Mutation p.L51V 0.36 deleterious(0) probably_damaging(0.999) TCGA-CN-4741-01 14 70989722 70989722 G A ADAM20 Missense_Mutation p.H635Y 0.04 tolerated(0.14) benign(0.021) TCGA-CN-4741-01 14 80130147 80130147 C A NRXN3 Missense_Mutation p.F784L 0.42 deleterious(0.02) benign(0.001) TCGA-CN-4741-01 15 25616832 25616832 G T UBE3A Missense_Mutation p.S166R 0.39 deleterious(0) probably_damaging(0.985) TCGA-CN-4741-01 15 30918955 30918956 AT - ARHGAP11B 5'UTR 0.31 TCGA-CN-4741-01 15 40241351 40241351 C G EIF2AK4 Nonsense_Mutation p.S132* 0.06 TCGA-CN-4741-01 15 66190400 66190400 C T MEGF11 Missense_Mutation p.G1003S 0.39 tolerated(0.12) benign(0.001) TCGA-CN-4741-01 15 73622066 73622066 C T HCN4 Missense_Mutation p.G480S 0.42 deleterious(0.01) unknown(0) TCGA-CN-4741-01 15 75655014 75655014 C T MAN2C1 Missense_Mutation p.R289Q 0.19 tolerated(0.48) benign(0.002) TCGA-CN-4741-01 15 76254257 76254257 T A NRG4 Missense_Mutation p.I55F 0.42 deleterious(0.02) possibly_damaging(0.754) TCGA-CN-4741-01 15 91454654 91454654 C T MAN2A2 Silent p.F661F 0.27 TCGA-CN-4741-01 16 1826278 1826278 G A EME2 3'UTR 0.09 TCGA-CN-4741-01 16 20489931 20489931 G A ACSM2A Missense_Mutation p.G405S 0.26 deleterious(0) possibly_damaging(0.87) TCGA-CN-4741-01 16 22344979 22344979 C T POLR3E Silent p.S695S 0.36 TCGA-CN-4741-01 16 28498849 28498849 C T CLN3 Missense_Mutation p.V130I 0.37 tolerated(0.83) benign(0.013) TCGA-CN-4741-01 16 55803969 55803969 G A CES1P1 RNA 0.14 TCGA-CN-4741-01 16 66430060 66430060 C T CDH5 Missense_Mutation p.P439L 0.32 deleterious(0.01) benign(0.41) TCGA-CN-4741-01 16 68224779 68224779 C T NFATC3 Missense_Mutation p.S736L 0.06 tolerated(0.22) benign(0.001) TCGA-CN-4741-01 16 69745185 69745186 - T NQO1 Splice_Site p.X174_splice 0.41 TCGA-CN-4741-01 16 70284893 70284893 C T EXOSC6 3'UTR 0.13 TCGA-CN-4741-01 16 75512968 75512968 G A CHST6 Silent p.A253A 0.38 TCGA-CN-4741-01 16 78064472 78064472 G T CLEC3A Nonsense_Mutation p.E119* 0.34 TCGA-CN-4741-01 17 30668260 30668260 C T C17orf75 Missense_Mutation p.G62S 0.03 tolerated(0.42) benign(0.005) TCGA-CN-4741-01 17 34068186 34068186 C T RASL10B Silent p.C158C 0.32 TCGA-CN-4741-01 17 4389636 4389636 C T SPNS3 Intron 0.35 TCGA-CN-4741-01 17 5418344 5418344 C A NLRP1 Missense_Mutation p.Q1384H 0.33 deleterious(0.02) probably_damaging(0.949) TCGA-CN-4741-01 17 57165711 57165711 T C TRIM37 Silent p.Q74Q 0.42 TCGA-CN-4741-01 17 76487582 76487582 G A DNAH17 Silent p.D2190D 0.33 TCGA-CN-4741-01 18 47799971 47799971 G A MBD1 Missense_Mutation p.P470L 0.47 deleterious(0) probably_damaging(0.994) TCGA-CN-4741-01 18 47812188 47812188 C T CXXC1 Missense_Mutation p.M190I 0.38 deleterious(0) probably_damaging(0.922) TCGA-CN-4741-01 18 77806103 77806103 G A RBFA Missense_Mutation p.R327K 0.05 tolerated(1) benign(0.001) TCGA-CN-4741-01 18 77806105 77806105 G A RBFA Missense_Mutation p.G328R 0.05 tolerated(0.14) benign(0.04) TCGA-CN-4741-01 19 13080366 13080366 G C DAND5 5'UTR 0.07 TCGA-CN-4741-01 19 17001171 17001171 C A F2RL3 Missense_Mutation p.S299R 0.44 deleterious(0) probably_damaging(0.999) TCGA-CN-4741-01 19 17845129 17845129 C T MAP1S Silent p.Y1024Y 0.27 TCGA-CN-4741-01 19 2213555 2213555 C T DOT1L Silent p.L525L 0.52 TCGA-CN-4741-01 19 22363197 22363197 C T ZNF676 Missense_Mutation p.R441K 0.34 tolerated(0.67) benign(0) TCGA-CN-4741-01 19 36853022 36853022 A T ZFP14 Missense_Mutation p.I43N 0.39 deleterious(0) benign(0.283) TCGA-CN-4741-01 19 37903739 37903739 T C ZNF569 Silent p.E607E 0.35 TCGA-CN-4741-01 19 39297125 39297125 G A LGALS4 Silent p.I150I 0.05 TCGA-CN-4741-01 19 46206184 46206184 C T QPCTL Silent p.I342I 0.12 TCGA-CN-4741-01 19 51462323 51462323 C A KLK6 3'UTR 0.28 TCGA-CN-4741-01 19 54803659 54803659 C T LILRA3 Silent p.T55T 0.11 TCGA-CN-4741-01 19 55048157 55048157 C A KIR3DX1 Missense_Mutation p.L242I 0.34 deleterious(0) possibly_damaging(0.626) TCGA-CN-4741-01 19 55494891 55494891 C T NLRP2 Silent p.L609L 0.08 TCGA-CN-4741-01 19 57037187 57037187 C T ZNF471 Missense_Mutation p.S584L 0.12 deleterious(0) probably_damaging(0.977) TCGA-CN-4741-01 19 58189827 58189827 G T ZSCAN4 Missense_Mutation p.A286S 0.04 tolerated(0.14) benign(0.395) TCGA-CN-4741-01 19 58772699 58772699 G A ZNF544 Missense_Mutation p.E243K 0.04 tolerated(0.59) benign(0.337) TCGA-CN-4741-01 1 102312598 102312598 G A OLFM3 Intron 0.29 TCGA-CN-4741-01 1 108679227 108679227 G A SLC25A24 3'UTR 0.32 TCGA-CN-4741-01 1 109794495 109794495 G C CELSR2 Silent p.V598V 0.05 TCGA-CN-4741-01 1 112020686 112020686 G A C1orf162 Missense_Mutation p.E137K 0.04 tolerated(0.76) probably_damaging(0.981) TCGA-CN-4741-01 1 115604779 115604779 C T TSPAN2 Missense_Mutation p.E83K 0.26 deleterious(0.01) possibly_damaging(0.897) TCGA-CN-4741-01 1 16096922 16096922 A G FBLIM1 Missense_Mutation p.H187R 0.39 tolerated(0.07) probably_damaging(0.923) TCGA-CN-4741-01 1 16097009 16097009 G A FBLIM1 Missense_Mutation p.R216H 0.31 tolerated(0.22) benign(0.001) TCGA-CN-4741-01 1 1635057 1635057 C T CDK11A Missense_Mutation p.G640R 0.30 deleterious(0) unknown(0) TCGA-CN-4741-01 1 19436918 19436918 G T UBR4 Missense_Mutation p.S3978Y 0.33 probably_damaging(0.962) TCGA-CN-4741-01 1 198701643 198701643 C T PTPRC Silent p.N700N 0.36 TCGA-CN-4741-01 1 21924900 21924900 G C RAP1GAP Missense_Mutation p.S688R 0.04 deleterious(0.02) possibly_damaging(0.774) TCGA-CN-4741-01 1 231064751 231064751 G A TTC13 Silent p.H463H 0.40 TCGA-CN-4741-01 1 32682796 32682796 G A TMEM234 Intron 0.42 TCGA-CN-4741-01 1 45271192 45271192 C A PLK3 Missense_Mutation p.L595I 0.45 tolerated(0.24) benign(0.41) TCGA-CN-4741-01 1 45481099 45481099 A G UROD Missense_Mutation p.M345V 0.45 tolerated(1) possibly_damaging(0.483) TCGA-CN-4741-01 1 62954604 62954604 C A DOCK7 Splice_Site p.X1800_splice 0.21 TCGA-CN-4741-01 1 74492542 74492542 C T LRRIQ3 Silent p.V610V 0.38 TCGA-CN-4741-01 20 62839236 62839236 C T MYT1 Silent p.T229T 0.12 TCGA-CN-4741-01 21 34116017 34116017 C T PAXBP1 Missense_Mutation p.D747N 0.28 deleterious(0) probably_damaging(0.999) TCGA-CN-4741-01 21 46702265 46702265 G A POFUT2 Missense_Mutation p.R213W 0.43 deleterious(0) benign(0.004) TCGA-CN-4741-01 22 17688100 17688100 G A CECR1 Missense_Mutation p.H135Y 0.34 tolerated(1) benign(0.001) TCGA-CN-4741-01 22 21138321 21138321 G A SERPIND1 Silent p.E317E 0.08 TCGA-CN-4741-01 22 21386127 21386127 G T SLC7A4 5'UTR 0.35 TCGA-CN-4741-01 22 25158476 25158476 G A PIWIL3 5'UTR 0.08 TCGA-CN-4741-01 22 32007798 32007798 G A SFI1 Missense_Mutation p.R821Q 0.44 tolerated(0.25) benign(0.01) TCGA-CN-4741-01 22 38508144 38508144 G A PLA2G6 3'UTR 0.56 TCGA-CN-4741-01 22 43275154 43275154 G A PACSIN2 Nonsense_Mutation p.R310* 0.04 TCGA-CN-4741-01 2 132235898 132235898 G C TUBA3D Missense_Mutation p.E55D 0.20 deleterious_low_confidence(0.04) benign(0.007) TCGA-CN-4741-01 2 220116386 220116386 G A TUBA4A Silent p.L92L 0.14 TCGA-CN-4741-01 2 220338272 220338272 C T SPEG Silent p.I1398I 0.09 TCGA-CN-4741-01 2 223499180 223499180 G A FARSB Missense_Mutation p.S179L 0.04 tolerated(0.06) benign(0.013) TCGA-CN-4741-01 2 46583923 46583923 C T EPAS1 Missense_Mutation p.R144C 0.42 deleterious(0) probably_damaging(0.992) TCGA-CN-4741-01 2 74129548 74129548 G T ACTG2 Missense_Mutation p.R63L 0.37 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-CN-4741-01 3 111769615 111769615 T C TMPRSS7 Silent p.C270C 0.16 TCGA-CN-4741-01 3 134644682 134644682 C A EPHB1 Missense_Mutation p.A28D 0.06 deleterious(0.02) possibly_damaging(0.833) TCGA-CN-4741-01 3 140178491 140178491 G T CLSTN2 Missense_Mutation p.D368Y 0.15 deleterious(0.01) possibly_damaging(0.593) TCGA-CN-4741-01 3 157921018 157921018 C T RSRC1 Missense_Mutation p.H160Y 0.76 tolerated_low_confidence(0.57) benign(0.12) TCGA-CN-4741-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.11 deleterious(0.02) probably_damaging(0.959) TCGA-CN-4741-01 3 184008348 184008348 G A ECE2 Nonsense_Mutation p.W671* 0.03 TCGA-CN-4741-01 3 187447102 187447102 G A BCL6 Missense_Mutation p.A364V 0.02 tolerated(0.19) benign(0.055) TCGA-CN-4741-01 3 197585712 197585712 C T LRCH3 Missense_Mutation p.S551L 0.17 deleterious(0.01) benign(0.197) TCGA-CN-4741-01 3 46399948 46399948 G A CCR2 Silent p.E310E 0.10 TCGA-CN-4741-01 3 52404531 52404531 C T DNAH1 Silent p.I2099I 0.29 TCGA-CN-4741-01 3 52867433 52867433 C T TMEM110-MUSTN1 Silent p.S342S 0.45 TCGA-CN-4741-01 4 109684128 109684128 C T ETNPPL 5'UTR 0.33 TCGA-CN-4741-01 4 126371107 126371107 A T FAT4 Missense_Mutation p.N2979I 0.35 probably_damaging(0.961) TCGA-CN-4741-01 4 156274418 156274418 C G MAP9 Missense_Mutation p.K485N 0.07 deleterious(0) probably_damaging(0.978) TCGA-CN-4741-01 4 156289952 156289952 C A MAP9 Missense_Mutation p.S165I 0.38 deleterious(0.05) benign(0.206) TCGA-CN-4741-01 4 157771474 157771474 C G PDGFC Silent p.T71T 0.37 TCGA-CN-4741-01 4 2826465 2826465 G T SH3BP2 Intron 0.37 TCGA-CN-4741-01 4 40936491 40936491 G A APBB2 Silent p.N412N 0.16 TCGA-CN-4741-01 4 48096216 48096216 G A TXK Missense_Mutation p.T196M 0.12 tolerated(0.12) benign(0.013) TCGA-CN-4741-01 4 96762282 96762282 C T PDHA2 Silent p.L327L 0.44 TCGA-CN-4741-01 5 113699624 113699624 C T KCNN2 Silent p.L170L 0.34 TCGA-CN-4741-01 5 11732259 11732259 C A CTNND2 Missense_Mutation p.V55F 0.38 deleterious(0.04) benign(0.275) TCGA-CN-4741-01 5 140711638 140711638 G A PCDHGA1 Missense_Mutation p.E463K 0.35 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CN-4741-01 5 141324708 141324708 C T PCDH12 3'UTR 0.60 TCGA-CN-4741-01 5 178987158 178987158 T C RUFY1 Missense_Mutation p.F148S 0.35 deleterious(0) probably_damaging(1) TCGA-CN-4741-01 5 179201801 179201801 C T MAML1 Silent p.L992L 0.05 TCGA-CN-4741-01 5 233625 233625 G A SDHA Missense_Mutation p.G310E 0.37 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CN-4741-01 5 24511507 24511507 C A CDH10 Missense_Mutation p.G311C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CN-4741-01 5 26881576 26881576 G T CDH9 Missense_Mutation p.P680Q 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4741-01 6 110530349 110530349 G T CDC40 Missense_Mutation p.D185Y 0.08 deleterious(0) probably_damaging(0.928) TCGA-CN-4741-01 6 138428497 138428497 C T PERP 5'UTR 0.38 TCGA-CN-4741-01 6 170151655 170151655 G T TCTE3 5'UTR 0.30 TCGA-CN-4741-01 6 31605326 31605326 G A PRRC2A Missense_Mutation p.R2146Q 0.06 unknown(0) TCGA-CN-4741-01 6 4032653 4032653 A G PRPF4B Missense_Mutation p.K301R 0.81 tolerated_low_confidence(0.69) probably_damaging(0.98) TCGA-CN-4741-01 6 4044117 4044117 C T PRPF4B Missense_Mutation p.T574M 0.74 deleterious(0.01) unknown(0) TCGA-CN-4741-01 6 41162432 41162432 G C TREML2 Silent p.L172L 0.14 TCGA-CN-4741-01 6 49928019 49928019 C G DEFB114 Missense_Mutation p.D66H 0.29 deleterious_low_confidence(0.03) benign(0.238) TCGA-CN-4741-01 6 76376512 76376512 G C SENP6 Missense_Mutation p.C360S 0.18 tolerated(0.28) benign(0.37) TCGA-CN-4741-01 6 82923970 82923970 T C IBTK Silent p.K726K 0.37 TCGA-CN-4741-01 7 100859263 100859263 G A PLOD3 Missense_Mutation p.R181C 0.34 deleterious(0.03) benign(0.39) TCGA-CN-4741-01 7 11468681 11468681 G A THSD7A Missense_Mutation p.R1046C 0.39 tolerated(0.08) probably_damaging(0.964) TCGA-CN-4741-01 7 11676072 11676072 G A THSD7A Missense_Mutation p.T236M 0.10 deleterious(0.01) possibly_damaging(0.701) TCGA-CN-4741-01 7 121653325 121653325 G T PTPRZ1 Missense_Mutation p.D1409Y 0.43 tolerated_low_confidence(0.13) benign(0.219) TCGA-CN-4741-01 7 129929571 129929571 G C CPA2 Missense_Mutation p.R415P 0.29 tolerated(0.07) probably_damaging(0.977) TCGA-CN-4741-01 7 138210029 138210029 A G TRIM24 Missense_Mutation p.I270V 0.27 deleterious(0.01) benign(0.417) TCGA-CN-4741-01 7 2303947 2303947 G T SNX8 Missense_Mutation p.F256L 0.06 tolerated(0.23) possibly_damaging(0.593) TCGA-CN-4741-01 7 92764127 92764127 C A SAMD9L Missense_Mutation p.M386I 0.09 tolerated(0.23) benign(0.001) TCGA-CN-4741-01 7 92764780 92764780 C G SAMD9L Missense_Mutation p.D169H 0.07 deleterious(0) probably_damaging(0.979) TCGA-CN-4741-01 8 101065137 101065137 G A RGS22 Missense_Mutation p.H528Y 0.38 deleterious(0.02) benign(0.025) TCGA-CN-4741-01 8 104898340 104898340 G A RIMS2 Missense_Mutation p.G505S 0.41 tolerated_low_confidence(0.05) probably_damaging(0.956) TCGA-CN-4741-01 8 128428272 128428272 G A POU5F1B Missense_Mutation p.G54D 0.53 deleterious(0.04) possibly_damaging(0.786) TCGA-CN-4741-01 8 146157609 146157609 C G ZNF16 Missense_Mutation p.Q188H 0.09 tolerated(0.06) benign(0.002) TCGA-CN-4741-01 8 163690 163690 T A RPL23AP53 RNA 0.28 TCGA-CN-4741-01 8 37729045 37729045 T A RAB11FIP1 Missense_Mutation p.D1092V 0.39 deleterious_low_confidence(0) benign(0.284) TCGA-CN-4741-01 8 37730417 37730417 C T RAB11FIP1 Missense_Mutation p.E635K 0.09 tolerated(0.25) benign(0.187) TCGA-CN-4741-01 8 42587115 42587115 T C CHRNB3 Missense_Mutation p.F222S 0.50 tolerated(0.26) possibly_damaging(0.827) TCGA-CN-4741-01 9 115760138 115760138 G A ZNF883 RNA 0.05 TCGA-CN-4741-01 9 118949729 118949729 C G PAPPA Missense_Mutation p.L238V 0.11 deleterious(0) probably_damaging(0.92) TCGA-CN-4741-01 9 125315718 125315718 C T OR1N2 Silent p.F90F 0.03 TCGA-CN-4741-01 9 131370227 131370227 G A SPTAN1 Missense_Mutation p.E1415K 0.04 deleterious(0.02) benign(0.191) TCGA-CN-4741-01 9 131503106 131503106 C T ZER1 Missense_Mutation p.E600K 0.05 deleterious(0) probably_damaging(0.996) TCGA-CN-4741-01 9 88162058 88162058 G A AGTPBP1 Missense_Mutation p.S1176F 0.05 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-CN-4741-01 X 107978638 107978638 C T IRS4 Missense_Mutation p.D313N 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4741-01 X 135581841 135581841 G C HTATSF1 Missense_Mutation p.D91H 0.07 deleterious(0.01) possibly_damaging(0.497) TCGA-CN-4741-01 X 140335600 140335600 C G SPANXC 3'UTR 0.65 TCGA-CN-4741-01 X 1409269 1409269 C T CSF2RA Silent p.D171D 0.58 TCGA-CN-4741-01 X 21875244 21875244 G A YY2 Silent p.L214L 0.04 TCGA-CN-4741-01 X 84502625 84502625 G T ZNF711 Missense_Mutation p.R16I 0.16 tolerated_low_confidence(0.07) benign(0.413) TCGA-CN-4742-01 10 105677412 105677412 C T OBFC1 Intron 0.14 TCGA-CN-4742-01 10 16794619 16794619 G T RSU1 Missense_Mutation p.P173T 0.11 deleterious(0) probably_damaging(1) TCGA-CN-4742-01 10 17168789 17168789 G C CUBN Missense_Mutation p.L120V 0.24 tolerated(0.05) benign(0.334) TCGA-CN-4742-01 10 61028362 61028362 C A FAM13C Missense_Mutation p.R298L 0.10 deleterious(0) probably_damaging(0.999) TCGA-CN-4742-01 10 81113604 81113604 G T PPIF 3'UTR 0.06 TCGA-CN-4742-01 11 111731328 111731328 C T ALG9 5'UTR 0.23 TCGA-CN-4742-01 11 114121202 114121202 G A ZBTB16 Missense_Mutation p.M649I 0.08 tolerated(0.23) benign(0.008) TCGA-CN-4742-01 11 40137212 40137212 C A LRRC4C Nonsense_Mutation p.E211* 0.24 TCGA-CN-4742-01 12 130184666 130184666 C T TMEM132D Silent p.P219P 0.11 TCGA-CN-4742-01 12 56380870 56380870 A G RAB5B Silent p.K42K 0.42 TCGA-CN-4742-01 12 7586143 7586143 C T CD163L1 Missense_Mutation p.C91Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-CN-4742-01 12 78598823 78598823 C T NAV3 Nonsense_Mutation p.R2293* 0.23 TCGA-CN-4742-01 12 96288830 96288830 C A CCDC38 Missense_Mutation p.A237S 0.08 tolerated(0.27) benign(0.26) TCGA-CN-4742-01 13 39266304 39266304 G C FREM2 Missense_Mutation p.G1608A 0.10 deleterious(0) possibly_damaging(0.782) TCGA-CN-4742-01 13 52684698 52684698 C A NEK5 Missense_Mutation p.V110L 0.12 deleterious(0) possibly_damaging(0.901) TCGA-CN-4742-01 14 21961325 21961325 A C TOX4 Missense_Mutation p.E517A 0.12 tolerated(0.39) possibly_damaging(0.899) TCGA-CN-4742-01 14 75376459 75376459 C T RPS6KL1 Missense_Mutation p.G353S 0.19 tolerated(0.37) benign(0.017) TCGA-CN-4742-01 15 43658711 43658712 - T ZSCAN29 Frame_Shift_Ins p.H273Qfs*2 0.14 TCGA-CN-4742-01 16 15122790 15122790 G A PDXDC1 Silent p.R420R 0.06 TCGA-CN-4742-01 16 17353318 17353318 C G XYLT1 Missense_Mutation p.R147P 0.15 tolerated_low_confidence(0.05) benign(0.117) TCGA-CN-4742-01 16 47117173 47117173 G A NETO2 Nonsense_Mutation p.R513* 0.10 TCGA-CN-4742-01 16 58577499 58577499 T C CNOT1 Intron 0.20 TCGA-CN-4742-01 17 30815310 30815310 C T CDK5R1 Silent p.A224A 0.15 TCGA-CN-4742-01 17 45777021 45777021 C T TBKBP1 Missense_Mutation p.S277L 0.09 deleterious(0.02) possibly_damaging(0.875) TCGA-CN-4742-01 17 59946709 59946709 G A INTS2 Silent p.V1029V 0.25 TCGA-CN-4742-01 17 63554134 63554134 C T AXIN2 Missense_Mutation p.S202N 0.42 deleterious(0) benign(0.255) TCGA-CN-4742-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.27 TCGA-CN-4742-01 18 6973160 6973160 G T LAMA1 Missense_Mutation p.Q2224K 0.36 tolerated(0.92) benign(0.144) TCGA-CN-4742-01 19 10602732 10602732 C T KEAP1 Silent p.Q282Q 0.15 TCGA-CN-4742-01 19 37880352 37880352 A G ZNF527 Silent p.E467E 0.07 TCGA-CN-4742-01 19 54209562 54209562 C T MIR526A1 RNA 0.15 TCGA-CN-4742-01 19 57869274 57869274 G T ZNF304 3'UTR 0.10 TCGA-CN-4742-01 19 9064691 9064691 T A MUC16 Silent p.T7585T 0.15 TCGA-CN-4742-01 1 102290781 102290781 G A OLFM3 Silent p.D131D 0.12 TCGA-CN-4742-01 1 111434046 111434046 T A CD53 Missense_Mutation p.L6M 0.04 deleterious(0.03) probably_damaging(0.94) TCGA-CN-4742-01 1 152192431 152192431 A G HRNR Silent p.Y558Y 0.14 TCGA-CN-4742-01 1 158815770 158815770 T G MNDA Missense_Mutation p.Y322D 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CN-4742-01 1 205306589 205306589 C T KLHDC8A Missense_Mutation p.V331M 0.14 deleterious(0) possibly_damaging(0.657) TCGA-CN-4742-01 1 2103541 2103541 G A PRKCZ Missense_Mutation p.R370K 0.09 tolerated(0.48) benign(0.014) TCGA-CN-4742-01 1 27690423 27690423 G A MAP3K6 Silent p.S283S 0.11 TCGA-CN-4742-01 1 31754270 31754270 T A SNRNP40 Missense_Mutation p.N202I 0.24 deleterious(0) probably_damaging(0.988) TCGA-CN-4742-01 1 92546009 92546009 C T BTBD8 5'UTR 0.41 TCGA-CN-4742-01 20 20177407 20177407 C T C20orf26 Missense_Mutation p.S595F 0.09 tolerated(0.53) benign(0.006) TCGA-CN-4742-01 20 3052920 3052920 C T OXT Silent p.S106S 0.10 TCGA-CN-4742-01 20 36322514 36322514 G A CTNNBL1 5'UTR 0.17 TCGA-CN-4742-01 20 9495473 9495473 G T LAMP5 5'UTR 0.32 TCGA-CN-4742-01 22 22869403 22869403 C G ZNF280A Missense_Mutation p.R184S 0.11 tolerated(1) benign(0.012) TCGA-CN-4742-01 2 100022563 100022563 G A REV1 Missense_Mutation p.R874W 0.13 deleterious(0.05) benign(0.276) TCGA-CN-4742-01 2 132288220 132288220 G A CCDC74A Missense_Mutation p.G122R 0.08 tolerated(0.54) benign(0.33) TCGA-CN-4742-01 2 149243425 149243425 A C MBD5 Missense_Mutation p.Q987P 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-CN-4742-01 2 160050872 160050872 A T TANC1 Missense_Mutation p.E949D 0.25 tolerated(0.36) probably_damaging(0.999) TCGA-CN-4742-01 2 168115300 168115300 A T XIRP2 3'UTR 0.11 TCGA-CN-4742-01 2 175450331 175450331 C A WIPF1 5'UTR 0.10 TCGA-CN-4742-01 2 179497431 179497431 C A TTN Missense_Mutation p.E14434D 0.12 TCGA-CN-4742-01 2 234078797 234078797 A G INPP5D Missense_Mutation p.D581G 0.18 deleterious(0) possibly_damaging(0.518) TCGA-CN-4742-01 2 238253407 238253407 G A COL6A3 Silent p.F2418F 0.11 TCGA-CN-4742-01 2 61719223 61719223 C T XPO1 Missense_Mutation p.D612N 0.14 tolerated(0.21) possibly_damaging(0.724) TCGA-CN-4742-01 2 70890768 70890768 G A ADD2 Missense_Mutation p.T657M 0.09 tolerated(0.08) benign(0.425) TCGA-CN-4742-01 2 90139449 90139449 T C IGKV1D-16 Missense_Mutation p.S74P 0.09 deleterious(0.03) benign(0.045) TCGA-CN-4742-01 3 141164513 141164514 CA - ZBTB38 Frame_Shift_Del p.H1095Lfs*26 0.19 TCGA-CN-4742-01 3 147108803 147108803 C T ZIC4 Missense_Mutation p.V357M 0.14 deleterious(0.01) benign(0.165) TCGA-CN-4742-01 4 123664753 123664753 T A BBS12 Missense_Mutation p.L569Q 0.07 deleterious(0.03) probably_damaging(0.923) TCGA-CN-4742-01 4 178272610 178272610 A T NEIL3 Nonsense_Mutation p.K316* 0.10 TCGA-CN-4742-01 5 133502896 133502896 G A SKP1 Missense_Mutation p.P46S 0.25 deleterious(0) probably_damaging(0.976) TCGA-CN-4742-01 5 135288629 135288629 C T LECT2 Missense_Mutation p.C25Y 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-CN-4742-01 5 145641354 145641354 C T RBM27 Silent p.H725H 0.27 TCGA-CN-4742-01 5 160763740 160763740 C T GABRB2 Missense_Mutation p.R193H 0.16 tolerated(0.06) benign(0.318) TCGA-CN-4742-01 5 41381991 41381991 G T PLCXD3 Missense_Mutation p.T250N 0.11 deleterious(0) probably_damaging(0.992) TCGA-CN-4742-01 6 117130586 117130586 T G GPRC6A Missense_Mutation p.K130T 0.17 deleterious(0.04) benign(0.045) TCGA-CN-4742-01 6 138200423 138200423 A G TNFAIP3 Missense_Mutation p.Y614C 0.14 deleterious(0) probably_damaging(0.975) TCGA-CN-4742-01 6 27419915 27419915 T C ZNF184 Missense_Mutation p.K475E 0.07 tolerated(0.5) probably_damaging(0.909) TCGA-CN-4742-01 6 29342553 29342553 T G OR12D3 Missense_Mutation p.K171T 0.16 tolerated(0.3) benign(0.063) TCGA-CN-4742-01 6 86328627 86328627 C T SYNCRIP Missense_Mutation p.E397K 0.07 tolerated(0.07) probably_damaging(0.973) TCGA-CN-4742-01 7 113520174 113520174 G T PPP1R3A Missense_Mutation p.Q325K 0.10 deleterious(0) possibly_damaging(0.715) TCGA-CN-4742-01 7 11630169 11630169 C T THSD7A Silent p.G457G 0.16 TCGA-CN-4742-01 7 126882877 126882877 C A GRM8 Missense_Mutation p.A128S 0.10 tolerated(0.74) benign(0.003) TCGA-CN-4742-01 7 136848907 136848907 C T hsa-mir-490 Intron 0.11 TCGA-CN-4742-01 7 4856927 4856927 C T RADIL Silent p.A557A 0.27 TCGA-CN-4742-01 7 55227956 55227956 A G EGFR Missense_Mutation p.I475V 0.30 tolerated(1) benign(0.014) TCGA-CN-4742-01 7 86826067 86826067 C T TMEM243 Nonsense_Mutation p.W81* 0.21 TCGA-CN-4742-01 9 139412381 139412381 G A NOTCH1 Missense_Mutation p.P422S 0.33 deleterious(0) probably_damaging(1) TCGA-CN-4742-01 X 112058641 112058641 C T AMOT Missense_Mutation p.R446Q 0.19 unknown(0) TCGA-CN-4742-01 X 132159533 132159533 C A USP26 Missense_Mutation p.V906L 0.15 tolerated(0.25) benign(0.019) TCGA-CN-4742-01 X 134305097 134305097 G A CT55 5'UTR 0.12 TCGA-CN-4742-01 X 135098865 135098865 T A SLC9A6 Missense_Mutation p.L433Q 0.07 deleterious(0) probably_damaging(1) TCGA-CN-4742-01 X 140995932 140995932 G C MAGEC1 Missense_Mutation p.E914D 0.08 tolerated(0.09) unknown(0) TCGA-CN-4742-01 X 150906936 150906936 G A CNGA2 5'UTR 0.31 TCGA-CN-4742-01 X 153698457 153698457 C T PLXNA3 Missense_Mutation p.R1645C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-4742-01 X 40465023 40465023 G A ATP6AP2 3'UTR 0.13 TCGA-CN-4742-01 X 41007737 41007737 G T USP9X Missense_Mutation p.W512L 0.12 deleterious(0) probably_damaging(0.953) TCGA-CN-4742-01 X 591553 591553 G C SHOX 5'UTR 0.11 TCGA-CN-4742-01 X 76872192 76872192 C G ATRX Missense_Mutation p.D1819H 0.19 probably_damaging(1) TCGA-CN-4742-01 X 85119736 85119736 A T CHM Missense_Mutation p.L621I 0.21 tolerated(0.33) benign(0.014) TCGA-CN-4742-01 X 91132915 91132915 G C PCDH11X Missense_Mutation p.S559T 0.16 tolerated(1) benign(0.001) TCGA-CN-4742-01 X 99917202 99917202 C T SRPX2 Nonsense_Mutation p.Q65* 0.20 TCGA-CN-5355-01 10 45480280 45480280 G A RASSF4 Silent p.E131E 0.11 TCGA-CN-5355-01 10 46121636 46121636 C T ZFAND4 Silent p.E545E 0.21 TCGA-CN-5355-01 10 60546842 60546842 G C BICC1 Splice_Site p.X182_splice 0.06 TCGA-CN-5355-01 10 93748998 93748998 C A BTAF1 Missense_Mutation p.Q839K 0.11 tolerated(0.3) benign(0.106) TCGA-CN-5355-01 11 10536422 10536422 A G RNF141 3'UTR 0.20 TCGA-CN-5355-01 11 118779003 118779003 G A BCL9L Missense_Mutation p.P130S 0.17 possibly_damaging(0.857) TCGA-CN-5355-01 11 133815961 133815961 T A IGSF9B Missense_Mutation p.Y86F 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-CN-5355-01 11 14989331 14989331 G T CALCA 3'Flank 0.24 TCGA-CN-5355-01 11 33054967 33054967 A T DEPDC7 Missense_Mutation p.H501L 0.24 deleterious(0) possibly_damaging(0.852) TCGA-CN-5355-01 11 40135934 40135934 C G LRRC4C Missense_Mutation p.E637Q 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-5355-01 11 57176684 57176684 G A SLC43A3 Silent p.T445T 0.21 TCGA-CN-5355-01 11 5905705 5905705 G T OR52E4 Missense_Mutation p.M61I 0.22 deleterious(0.02) benign(0.175) TCGA-CN-5355-01 11 71185480 71185480 G T NADSYN1 Missense_Mutation p.D236Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-CN-5355-01 11 77921387 77921388 - C USP35 Frame_Shift_Ins p.L831Pfs*16 0.12 TCGA-CN-5355-01 11 92715080 92715080 C T MTNR1B Missense_Mutation p.R231C 0.14 deleterious(0.04) benign(0.4) TCGA-CN-5355-01 12 106717343 106717343 A G TCP11L2 Missense_Mutation p.M231V 0.15 tolerated(0.17) benign(0) TCGA-CN-5355-01 12 112617111 112617111 G A HECTD4 Missense_Mutation p.A3547V 0.19 benign(0.003) TCGA-CN-5355-01 12 306025 306025 A C SLC6A12 Missense_Mutation p.F367V 0.15 deleterious(0) possibly_damaging(0.699) TCGA-CN-5355-01 12 46244170 46244170 C T ARID2 Missense_Mutation p.T755I 0.19 deleterious_low_confidence(0.02) benign(0.167) TCGA-CN-5355-01 12 59274631 59274631 T C LRIG3 Missense_Mutation p.I511M 0.25 deleterious(0.04) possibly_damaging(0.601) TCGA-CN-5355-01 12 73014920 73014920 T C TRHDE Silent p.Y789Y 0.24 TCGA-CN-5355-01 12 9256907 9256907 G A A2M Silent p.T398T 0.20 TCGA-CN-5355-01 13 101763549 101763549 C T NALCN Missense_Mutation p.G741R 0.25 tolerated(0.12) benign(0.259) TCGA-CN-5355-01 13 38266248 38266248 C G TRPC4 Missense_Mutation p.L374F 0.23 tolerated(0.16) probably_damaging(0.995) TCGA-CN-5355-01 14 45403630 45403630 C A KLHL28 Missense_Mutation p.R344L 0.42 tolerated(0.51) possibly_damaging(0.622) TCGA-CN-5355-01 14 47426789 47426789 A C MDGA2 Missense_Mutation p.V626G 0.19 deleterious(0.02) benign(0.006) TCGA-CN-5355-01 15 23890513 23890513 T A MAGEL2 Missense_Mutation p.T190S 0.18 tolerated(0.06) probably_damaging(0.991) TCGA-CN-5355-01 15 25296663 25296663 A G SNORD116-1 RNA 0.20 TCGA-CN-5355-01 15 52672048 52672048 G A MYO5A Silent p.I690I 0.19 TCGA-CN-5355-01 15 54919300 54919300 G T UNC13C Nonsense_Mutation p.E2212* 0.30 TCGA-CN-5355-01 15 59225794 59225794 C T SLTM 5'UTR 0.19 TCGA-CN-5355-01 15 91557072 91557072 G A VPS33B Nonsense_Mutation p.R107* 0.21 TCGA-CN-5355-01 16 20554262 20554262 T G ACSM2B Missense_Mutation p.S495R 0.15 deleterious(0) probably_damaging(0.945) TCGA-CN-5355-01 16 49671562 49671562 C T ZNF423 Missense_Mutation p.V501I 0.07 tolerated(0.5) benign(0.003) TCGA-CN-5355-01 16 55583314 55583314 A G LPCAT2 Missense_Mutation p.K354R 0.20 tolerated(0.08) benign(0.155) TCGA-CN-5355-01 16 602492 602492 A T CAPN15 Missense_Mutation p.H900L 0.23 deleterious(0) probably_damaging(0.998) TCGA-CN-5355-01 16 67911296 67911296 A T EDC4 Missense_Mutation p.N210Y 0.26 deleterious(0.01) benign(0.133) TCGA-CN-5355-01 16 86601397 86601397 C A FOXC2 Silent p.S152S 0.21 TCGA-CN-5355-01 17 32688914 32688914 C T CCL1 Missense_Mutation p.M26I 0.24 tolerated(0.13) benign(0.194) TCGA-CN-5355-01 17 39767694 39767694 C A KRT16 Missense_Mutation p.R225L 0.20 deleterious(0) probably_damaging(0.969) TCGA-CN-5355-01 17 40948502 40948502 T A WNK4 Missense_Mutation p.I1212N 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-CN-5355-01 17 7576853 7576853 C T TP53 Silent p.Q331Q 0.41 TCGA-CN-5355-01 17 7755572 7755572 G A KDM6B Silent p.V1462V 0.24 TCGA-CN-5355-01 17 7801355 7801355 G T CHD3 Silent p.T721T 0.15 TCGA-CN-5355-01 17 8792082 8792082 G A PIK3R5 Missense_Mutation p.A341V 0.07 tolerated(0.17) benign(0.021) TCGA-CN-5355-01 18 51800403 51800403 G T POLI Missense_Mutation p.V117L 0.30 deleterious(0.04) benign(0.107) TCGA-CN-5355-01 18 74671751 74671751 C G ZNF236 Missense_Mutation p.R1739G 0.17 deleterious(0.01) benign(0.131) TCGA-CN-5355-01 19 30936347 30936347 G A ZNF536 Missense_Mutation p.M626I 0.20 tolerated(0.12) benign(0) TCGA-CN-5355-01 19 40354053 40354053 C A FCGBP 3'UTR 0.26 TCGA-CN-5355-01 19 53116711 53116711 A G ZNF83 Silent p.G369G 0.21 TCGA-CN-5355-01 19 54780728 54780728 C G LILRB2 Silent p.L472L 0.22 TCGA-CN-5355-01 19 58102416 58102416 G A ZIK1 Missense_Mutation p.G413R 0.16 deleterious(0.03) probably_damaging(1) TCGA-CN-5355-01 19 58438767 58438767 C A ZNF418 Missense_Mutation p.G261V 0.06 tolerated(0.07) probably_damaging(0.988) TCGA-CN-5355-01 1 109295688 109295688 A T STXBP3 Missense_Mutation p.M35L 0.23 tolerated(1) benign(0.003) TCGA-CN-5355-01 1 16475542 16475542 A C EPHA2 Missense_Mutation p.W52G 0.15 deleterious(0) probably_damaging(1) TCGA-CN-5355-01 1 169200035 169200035 G C NME7 Missense_Mutation p.S304C 0.36 deleterious(0) possibly_damaging(0.576) TCGA-CN-5355-01 1 16957420 16957420 G C CROCCP2 RNA 0.29 TCGA-CN-5355-01 1 196205130 196205130 C T KCNT2 Silent p.E1094E 0.22 TCGA-CN-5355-01 1 201489431 201489431 C A RPS10P7 RNA 0.26 TCGA-CN-5355-01 1 220825399 220825399 G T MARK1 Missense_Mutation p.R548L 0.15 deleterious(0.01) benign(0.245) TCGA-CN-5355-01 1 231488769 231488769 T C SPRTN Missense_Mutation p.S378P 0.23 tolerated(0.58) benign(0.002) TCGA-CN-5355-01 1 237870464 237870464 A T RYR2 Missense_Mutation p.T3266S 0.15 benign(0.038) TCGA-CN-5355-01 1 6038470 6038470 C T NPHP4 Missense_Mutation p.V47M 0.16 tolerated(0.06) benign(0.048) TCGA-CN-5355-01 1 79383352 79383352 C A ELTD1 Missense_Mutation p.W572C 0.17 deleterious(0) probably_damaging(1) TCGA-CN-5355-01 20 1532406 1532406 C T SIRPD Missense_Mutation p.V118M 0.18 deleterious(0.01) possibly_damaging(0.826) TCGA-CN-5355-01 21 31798152 31798152 C A KRTAP13-3 Missense_Mutation p.G27C 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5355-01 21 43413874 43413875 - C ZBTB21 Frame_Shift_Ins p.I111Dfs*6 0.28 TCGA-CN-5355-01 22 17072997 17072997 G A CCT8L2 Silent p.P148P 0.13 TCGA-CN-5355-01 22 29454807 29454807 A C C22orf31 Missense_Mutation p.F266V 0.10 tolerated_low_confidence(0.15) benign(0.001) TCGA-CN-5355-01 22 39385564 39385564 C A APOBEC3B Missense_Mutation p.D224E 0.20 tolerated(0.66) possibly_damaging(0.658) TCGA-CN-5355-01 22 43617226 43617226 G C SCUBE1 Missense_Mutation p.P501R 0.23 tolerated(0.17) benign(0.016) TCGA-CN-5355-01 22 50167870 50167870 C T BRD1 3'UTR 0.19 TCGA-CN-5355-01 2 101087010 101087010 A G NMS Silent p.L20L 0.18 TCGA-CN-5355-01 2 111907687 111907687 G T BCL2L11 Missense_Mutation p.R154L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CN-5355-01 2 120003448 120003448 C T STEAP3 Missense_Mutation p.R136C 0.05 tolerated(0.07) benign(0.006) TCGA-CN-5355-01 2 141283518 141283518 T A LRP1B Missense_Mutation p.T2641S 0.25 possibly_damaging(0.621) TCGA-CN-5355-01 2 157182714 157182715 - A NR4A2 Frame_Shift_Ins p.M496Ifs*94 0.24 TCGA-CN-5355-01 2 160604745 160604745 A T MARCH7 Missense_Mutation p.Y315F 0.22 tolerated(0.68) benign(0.008) TCGA-CN-5355-01 2 164467772 164467772 G A FIGN Silent p.N190N 0.11 TCGA-CN-5355-01 2 228173694 228173694 A T COL4A3 Silent p.A1514A 0.25 TCGA-CN-5355-01 2 42557100 42557100 C G EML4 Missense_Mutation p.P900R 0.20 deleterious_low_confidence(0.03) benign(0.279) TCGA-CN-5355-01 3 141923415 141923415 G T GK5 Intron 0.12 TCGA-CN-5355-01 3 146171942 146171942 G A PLSCR2 Silent p.I183I 0.19 TCGA-CN-5355-01 3 159710911 159710911 A T IL12A Missense_Mutation p.K126M 0.21 tolerated(0.13) benign(0.041) TCGA-CN-5355-01 3 167525118 167525118 C A SERPINI1 Missense_Mutation p.T323K 0.16 deleterious(0) possibly_damaging(0.45) TCGA-CN-5355-01 3 172835423 172835423 G C SPATA16 Silent p.T33T 0.33 TCGA-CN-5355-01 3 194062541 194062541 G A CPN2 Silent p.T297T 0.31 TCGA-CN-5355-01 3 384665 384665 A T CHL1 Splice_Site p.X227_splice 0.18 TCGA-CN-5355-01 3 53156407 53156407 T C RFT1 Missense_Mutation p.M147V 0.32 deleterious(0.04) benign(0.314) TCGA-CN-5355-01 3 53699745 53699745 C A CACNA1D Silent p.A275A 0.20 TCGA-CN-5355-01 4 109588457 109588457 T G OSTC 3'UTR 0.19 TCGA-CN-5355-01 4 113359713 113359713 G C ALPK1 Missense_Mutation p.A1088P 0.20 deleterious(0) probably_damaging(1) TCGA-CN-5355-01 4 134071805 134071805 C T PCDH10 Silent p.D170D 0.16 TCGA-CN-5355-01 4 177241184 177241184 C G SPCS3 5'UTR 0.22 TCGA-CN-5355-01 4 1957915 1957915 G T WHSC1 Missense_Mutation p.A961S 0.09 deleterious(0) probably_damaging(0.999) TCGA-CN-5355-01 4 44626759 44626759 G T YIPF7 Missense_Mutation p.A180D 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-CN-5355-01 4 48091743 48091743 C T TXK Intron 0.24 TCGA-CN-5355-01 4 76943875 76943875 C G CXCL10 Missense_Mutation p.A53P 0.14 tolerated(0.54) benign(0.006) TCGA-CN-5355-01 4 83770026 83770026 C A SEC31A Missense_Mutation p.K811N 0.20 tolerated(0.15) possibly_damaging(0.493) TCGA-CN-5355-01 5 140604627 140604627 G C PCDHB14 Missense_Mutation p.R517T 0.12 tolerated_low_confidence(0.06) benign(0.015) TCGA-CN-5355-01 5 159821393 159821393 C A C5orf54 Nonsense_Mutation p.E369* 0.19 TCGA-CN-5355-01 5 159992486 159992486 G T ATP10B Silent p.R1454R 0.26 TCGA-CN-5355-01 5 178413301 178413301 C T GRM6 Missense_Mutation p.A652T 0.16 tolerated(0.06) benign(0.363) TCGA-CN-5355-01 5 26988326 26988326 C G CDH9 Missense_Mutation p.G39R 0.29 tolerated(0.08) benign(0.001) TCGA-CN-5355-01 5 50687247 50687247 A T ISL1 Missense_Mutation p.D302V 0.25 deleterious(0) possibly_damaging(0.616) TCGA-CN-5355-01 5 54275232 54275232 A G ESM1 Silent p.I161I 0.12 TCGA-CN-5355-01 6 109773738 109773738 C T MICAL1 Missense_Mutation p.A218T 0.28 tolerated(0.1) possibly_damaging(0.545) TCGA-CN-5355-01 6 146755141 146755141 C A GRM1 Missense_Mutation p.P932T 0.19 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-CN-5355-01 6 30530287 30530288 - T PRR3 3'UTR 0.16 TCGA-CN-5355-01 6 30680344 30680344 C T MDC1 Missense_Mutation p.E459K 0.21 tolerated(0.08) probably_damaging(0.971) TCGA-CN-5355-01 6 38256211 38256211 C A BTBD9 Missense_Mutation p.A431S 0.18 tolerated(0.6) possibly_damaging(0.804) TCGA-CN-5355-01 6 41565600 41565600 C A FOXP4 Missense_Mutation p.L603I 0.15 tolerated(0.31) benign(0.008) TCGA-CN-5355-01 6 80720550 80720550 A G TTK Silent p.K163K 0.28 TCGA-CN-5355-01 7 100414856 100414856 C T EPHB4 Missense_Mutation p.G516R 0.17 deleterious(0) probably_damaging(0.998) TCGA-CN-5355-01 7 110303688 110303688 C A IMMP2L Missense_Mutation p.E166D 0.22 tolerated(0.53) benign(0.001) TCGA-CN-5355-01 7 129053482 129053482 A G AHCYL2 Missense_Mutation p.S472G 0.18 tolerated(1) benign(0.001) TCGA-CN-5355-01 7 142960570 142960570 G C GSTK1 5'UTR 0.40 TCGA-CN-5355-01 7 48413965 48413965 T G ABCA13 Missense_Mutation p.F3719V 0.21 probably_damaging(1) TCGA-CN-5355-01 7 6731084 6731084 C A ZNF12 Nonsense_Mutation p.E497* 0.20 TCGA-CN-5355-01 8 114111056 114111056 T C CSMD3 Missense_Mutation p.I282M 0.17 deleterious(0.04) possibly_damaging(0.866) TCGA-CN-5355-01 8 131793033 131793033 C T ADCY8 Missense_Mutation p.R1120Q 0.17 deleterious(0) benign(0.041) TCGA-CN-5355-01 8 133764056 133764056 C A TMEM71 Missense_Mutation p.V97F 0.18 deleterious(0) probably_damaging(1) TCGA-CN-5355-01 8 139164635 139164635 C A FAM135B Missense_Mutation p.V695F 0.23 tolerated(0.13) benign(0.106) TCGA-CN-5355-01 8 69028102 69028102 T C PREX2 Silent p.F1087F 0.16 TCGA-CN-5355-01 8 93017415 93017415 G - RUNX1T1 Frame_Shift_Del p.T235Pfs*13 0.16 TCGA-CN-5355-01 8 97614673 97614673 C T SDC2 Missense_Mutation p.P75S 0.19 tolerated(0.06) benign(0.353) TCGA-CN-5355-01 9 111617803 111617803 G A ACTL7B Silent p.T136T 0.34 TCGA-CN-5355-01 9 127765428 127765428 T A SCAI Missense_Mutation p.S367C 0.36 deleterious(0) probably_damaging(0.929) TCGA-CN-5355-01 9 139401756 139401756 C T NOTCH1 Splice_Site p.X1215_splice 0.32 TCGA-CN-5355-01 9 17236462 17236462 A T CNTLN Missense_Mutation p.N242I 0.17 deleterious(0) possibly_damaging(0.452) TCGA-CN-5355-01 9 6330998 6330998 G A TPD52L3 3'Flank 0.16 TCGA-CN-5355-01 9 72472845 72472845 C T C9orf135 Missense_Mutation p.T134I 0.36 tolerated(0.06) benign(0.004) TCGA-CN-5355-01 9 94871055 94871055 T A SPTLC1 Missense_Mutation p.D76V 0.21 deleterious(0.01) benign(0.398) TCGA-CN-5355-01 X 142718167 142718167 A TG SLITRK4 Frame_Shift_Ins p.L253Sfs*17 0.31 TCGA-CN-5355-01 X 40982866 40982866 C A USP9X 5'UTR 0.46 TCGA-CN-5355-01 X 44929602 44929602 G T KDM6A Missense_Mutation p.R901M 0.43 deleterious(0) probably_damaging(0.995) TCGA-CN-5356-01 10 107022247 107022247 T C SORCS3 Missense_Mutation p.I1201T 0.27 tolerated(0.14) benign(0.027) TCGA-CN-5356-01 10 117884808 117884808 C G GFRA1 Missense_Mutation p.V232L 0.29 tolerated(0.36) benign(0.001) TCGA-CN-5356-01 10 11805415 11805415 G A ECHDC3 Missense_Mutation p.D262N 0.33 tolerated(0.14) benign(0.057) TCGA-CN-5356-01 10 16873368 16873368 C T CUBN Missense_Mutation p.G3471R 0.18 deleterious(0) probably_damaging(0.997) TCGA-CN-5356-01 10 21139422 21139422 T C NEBL Missense_Mutation p.K340E 0.24 deleterious(0) possibly_damaging(0.73) TCGA-CN-5356-01 10 31810534 31810534 G C ZEB1 Missense_Mutation p.Q758H 0.38 tolerated(0.48) benign(0.008) TCGA-CN-5356-01 10 32128565 32128565 T C ARHGAP12 Silent p.T457T 0.30 TCGA-CN-5356-01 10 33468991 33468991 T C NRP1 3'UTR 0.22 TCGA-CN-5356-01 10 37505229 37505229 G A ANKRD30A Missense_Mutation p.C941Y 0.20 tolerated(0.06) possibly_damaging(0.831) TCGA-CN-5356-01 10 51464766 51464766 G A AGAP7 Silent p.L564L 0.19 TCGA-CN-5356-01 10 52570857 52570857 C G A1CF Missense_Mutation p.R476T 0.20 tolerated(0.09) probably_damaging(0.999) TCGA-CN-5356-01 10 56106239 56106239 A T PCDH15 Silent p.T160T 0.15 TCGA-CN-5356-01 10 56138617 56138617 C A PCDH15 Silent p.V81V 0.26 TCGA-CN-5356-01 10 61011174 61011174 C G FAM13C Intron 0.10 TCGA-CN-5356-01 10 75138725 75138725 T A ANXA7 Nonsense_Mutation p.K430* 0.10 TCGA-CN-5356-01 10 7708782 7708782 C - ITIH5 Frame_Shift_Del p.G25Afs*21 0.33 TCGA-CN-5356-01 10 82187166 82187166 C T FAM213A Nonsense_Mutation p.R164* 0.12 TCGA-CN-5356-01 10 92617175 92617175 C - HTR7 Frame_Shift_Del p.G85Afs*4 0.39 TCGA-CN-5356-01 11 100211321 100211321 T C CNTN5 Missense_Mutation p.Y953H 0.23 deleterious(0.02) probably_damaging(0.939) TCGA-CN-5356-01 11 101863550 101863550 A G KIAA1377 Missense_Mutation p.T1096A 0.16 tolerated(0.19) benign(0.02) TCGA-CN-5356-01 11 102663349 102663349 G A MMP1 Silent p.V340V 0.15 TCGA-CN-5356-01 11 115047259 115047259 T C CADM1 Missense_Mutation p.T422A 0.30 deleterious(0) probably_damaging(0.953) TCGA-CN-5356-01 11 119983034 119983034 C A TRIM29 3'UTR 0.25 TCGA-CN-5356-01 11 120350888 120350888 G A ARHGEF12 Missense_Mutation p.R1329Q 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.842) TCGA-CN-5356-01 11 124761403 124761403 A G ROBO4 Silent p.T580T 0.26 TCGA-CN-5356-01 11 125885306 125885306 C G CDON Missense_Mutation p.C343S 0.11 tolerated(0.18) benign(0.14) TCGA-CN-5356-01 11 130060396 130060396 T A ST14 Missense_Mutation p.F228I 0.12 tolerated(0.3) benign(0.038) TCGA-CN-5356-01 11 20939793 20939793 A G NELL1 Silent p.L223L 0.40 TCGA-CN-5356-01 11 21581766 21581766 C T NELL1 Silent p.T606T 0.33 TCGA-CN-5356-01 11 2189385 2189385 G T TH Nonsense_Mutation p.S202* 0.30 TCGA-CN-5356-01 11 22360160 22360160 C G SLC17A6 Missense_Mutation p.I27M 0.31 deleterious(0.04) benign(0.004) TCGA-CN-5356-01 11 33375104 33375104 C A HIPK3 Missense_Mutation p.P1213Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-CN-5356-01 11 44297071 44297071 A G ALX4 Silent p.L202L 0.34 TCGA-CN-5356-01 11 4608360 4608360 G C OR52I2 Silent p.S106S 0.25 TCGA-CN-5356-01 11 46896618 46896618 G A LRP4 Missense_Mutation p.S1321F 0.31 deleterious(0) possibly_damaging(0.553) TCGA-CN-5356-01 11 5510546 5510546 A G OR52D1 Missense_Mutation p.T204A 0.34 tolerated(0.57) probably_damaging(0.998) TCGA-CN-5356-01 11 55339627 55339627 T C OR4C16 Silent p.T8T 0.05 TCGA-CN-5356-01 11 55339628 55339628 G T OR4C16 Nonsense_Mutation p.E9* 0.06 TCGA-CN-5356-01 11 55433099 55433100 - A OR4C6 Frame_Shift_Ins p.H153Qfs*18 0.15 TCGA-CN-5356-01 11 56237559 56237559 A G OR5M3 Missense_Mutation p.C139R 0.34 deleterious(0) probably_damaging(0.998) TCGA-CN-5356-01 11 59190426 59190426 T C OR5A2 Translation_Start_Site p.M1? 0.29 deleterious(0.01) benign(0.015) TCGA-CN-5356-01 11 65310657 65310657 C A LTBP3 Missense_Mutation p.G839C 0.12 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 11 67261436 67261436 G A PITPNM1 Missense_Mutation p.R989C 0.26 deleterious(0) possibly_damaging(0.453) TCGA-CN-5356-01 11 6867339 6867339 G T OR10A5 Silent p.R142R 0.07 TCGA-CN-5356-01 11 74873807 74873807 C - SLCO2B1 Frame_Shift_Del p.P42Qfs*23 0.26 TCGA-CN-5356-01 11 78279726 78279726 C A NARS2 Silent p.V108V 0.31 TCGA-CN-5356-01 11 82693134 82693134 C G RAB30 3'UTR 0.15 TCGA-CN-5356-01 11 83673957 83673957 C A DLG2 Missense_Mutation p.K437N 0.27 tolerated(0.36) probably_damaging(0.995) TCGA-CN-5356-01 11 88386571 88386571 A T GRM5 Missense_Mutation p.S304R 0.45 deleterious(0.01) probably_damaging(0.976) TCGA-CN-5356-01 11 92085313 92085313 G T FAT3 Missense_Mutation p.R12L 0.11 benign(0) TCGA-CN-5356-01 11 92086560 92086560 C A FAT3 Missense_Mutation p.L428M 0.33 possibly_damaging(0.899) TCGA-CN-5356-01 11 95564303 95564303 G A CEP57 Silent p.K462K 0.13 TCGA-CN-5356-01 12 102043145 102043145 C A MYBPC1 Missense_Mutation p.A410D 0.13 tolerated(0.3) benign(0.063) TCGA-CN-5356-01 12 111747976 111747976 C A CUX2 Missense_Mutation p.L464M 0.25 tolerated(0.21) benign(0.03) TCGA-CN-5356-01 12 113730845 113730845 G T TPCN1 Silent p.L812L 0.22 TCGA-CN-5356-01 12 120876216 120876216 G T AL021546.6 Silent p.A23A 0.27 TCGA-CN-5356-01 12 130184858 130184858 G T TMEM132D Missense_Mutation p.D155E 0.33 deleterious(0.01) possibly_damaging(0.894) TCGA-CN-5356-01 12 133266848 133266848 G A PXMP2 Splice_Site p.X41_splice 0.24 TCGA-CN-5356-01 12 32793519 32793519 A G FGD4 3'UTR 0.23 TCGA-CN-5356-01 12 48141546 48141546 G T RAPGEF3 Silent p.A474A 0.15 TCGA-CN-5356-01 12 48866821 48866821 T A ANP32D Missense_Mutation p.V125E 0.15 deleterious(0.02) possibly_damaging(0.535) TCGA-CN-5356-01 12 49444267 49444268 - G KMT2D Frame_Shift_Ins p.Q1035Pfs*33 0.32 TCGA-CN-5356-01 12 51834519 51834519 C T SLC4A8 Nonsense_Mutation p.Q26* 0.21 TCGA-CN-5356-01 12 52779387 52779387 G A KRT84 5'UTR 0.29 TCGA-CN-5356-01 12 62892803 62892803 G T MON2 Missense_Mutation p.M180I 0.24 tolerated(0.06) benign(0.001) TCGA-CN-5356-01 12 64588097 64588097 G A C12orf66 Missense_Mutation p.T288M 0.23 deleterious(0.01) benign(0.118) TCGA-CN-5356-01 12 66788009 66788009 G C GRIP1 Missense_Mutation p.T651S 0.25 tolerated(0.06) benign(0.139) TCGA-CN-5356-01 12 73056937 73056937 G T TRHDE Nonsense_Mutation p.E1013* 0.26 TCGA-CN-5356-01 12 73056946 73056946 C A TRHDE Missense_Mutation p.Q1016K 0.24 tolerated(0.34) benign(0.033) TCGA-CN-5356-01 12 78593221 78593221 G T NAV3 Missense_Mutation p.D2187Y 0.24 deleterious(0) probably_damaging(0.947) TCGA-CN-5356-01 12 8325217 8325217 G T ZNF705A 5'UTR 0.39 TCGA-CN-5356-01 12 88589095 88589095 A G TMTC3 Missense_Mutation p.E805G 0.30 deleterious(0.01) possibly_damaging(0.713) TCGA-CN-5356-01 12 99194841 99194841 G T ANKS1B Silent p.T1043T 0.32 TCGA-CN-5356-01 12 99194842 99194842 G T ANKS1B Missense_Mutation p.T1043N 0.33 deleterious(0.04) possibly_damaging(0.861) TCGA-CN-5356-01 13 100637292 100637292 G A ZIC2 Missense_Mutation p.D390N 0.51 deleterious(0) probably_damaging(0.949) TCGA-CN-5356-01 13 107822700 107822700 T C FAM155A 3'UTR 0.56 TCGA-CN-5356-01 13 23909292 23909292 T A SACS Missense_Mutation p.D2908V 0.31 probably_damaging(0.998) TCGA-CN-5356-01 13 25265203 25265203 G T ATP12A Nonsense_Mutation p.E301* 0.32 TCGA-CN-5356-01 13 37015288 37015288 C G CCNA1 Missense_Mutation p.P378A 0.37 deleterious(0.02) probably_damaging(1) TCGA-CN-5356-01 14 106208061 106208061 G - IGHG1 Frame_Shift_Del p.L248* 0.32 TCGA-CN-5356-01 14 107078600 107078600 T A IGHV1-58 Nonsense_Mutation p.K42* 0.28 TCGA-CN-5356-01 14 19377681 19377681 C A OR11H12 Missense_Mutation p.Q30K 0.27 deleterious(0) benign(0.001) TCGA-CN-5356-01 14 19553607 19553607 G T POTEG Missense_Mutation p.W64L 0.05 deleterious_low_confidence(0) benign(0.146) TCGA-CN-5356-01 14 19553736 19553736 C A POTEG Missense_Mutation p.P107H 0.04 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-CN-5356-01 14 20528872 20528872 C A OR4L1 Silent p.V223V 0.24 TCGA-CN-5356-01 14 21863125 21863125 C A CHD8 Missense_Mutation p.R1779L 0.35 tolerated(0.15) probably_damaging(0.987) TCGA-CN-5356-01 14 22748992 22748992 C A TRAV38-2DV8 5'UTR 0.26 TCGA-CN-5356-01 14 37777652 37777652 G A MIPOL1 Silent p.K252K 0.25 TCGA-CN-5356-01 14 52472080 52472080 A G NID2 3'UTR 0.22 TCGA-CN-5356-01 14 56114744 56114744 A C KTN1 Missense_Mutation p.I737L 0.13 tolerated(0.36) benign(0.017) TCGA-CN-5356-01 14 64630120 64630120 G C SYNE2 Missense_Mutation p.E5434Q 0.23 probably_damaging(0.963) TCGA-CN-5356-01 14 77327047 77327047 G T C14orf166B Silent p.V372V 0.18 TCGA-CN-5356-01 14 94187810 94187810 C T PRIMA1 Missense_Mutation p.V148M 0.20 tolerated(0.06) probably_damaging(0.961) TCGA-CN-5356-01 14 95033433 95033433 G A SERPINA4 Missense_Mutation p.R259K 0.27 tolerated(0.35) benign(0.064) TCGA-CN-5356-01 15 20495401 20495401 G A CHEK2P2 RNA 0.05 TCGA-CN-5356-01 15 23811560 23811560 C A MKRN3 Missense_Mutation p.P211T 0.19 deleterious(0) probably_damaging(0.928) TCGA-CN-5356-01 15 23811561 23811561 C A MKRN3 Missense_Mutation p.P211H 0.19 deleterious(0.02) benign(0.145) TCGA-CN-5356-01 15 25415951 25415951 C A SNORD115-1 RNA 0.24 TCGA-CN-5356-01 15 25472151 25472151 A G SNORD115-33 5'Flank 0.24 TCGA-CN-5356-01 15 26806266 26806266 G T GABRB3 Missense_Mutation p.P298H 0.21 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 15 39909940 39909940 T C FSIP1 Missense_Mutation p.I565M 0.32 tolerated(0.09) benign(0.115) TCGA-CN-5356-01 15 43927951 43927951 G A CATSPER2 Silent p.D365D 0.31 TCGA-CN-5356-01 15 44941067 44941067 T A SPG11 Silent p.L533L 0.30 TCGA-CN-5356-01 15 45557355 45557355 T A SLC28A2 Missense_Mutation p.F257L 0.03 tolerated(0.05) probably_damaging(0.997) TCGA-CN-5356-01 15 58302916 58302916 C T ALDH1A2 Missense_Mutation p.G142S 0.28 tolerated(0.41) probably_damaging(0.92) TCGA-CN-5356-01 15 63449708 63449708 T A RPS27L 5'UTR 0.41 TCGA-CN-5356-01 15 64367584 64367584 C G FAM96A Intron 0.38 TCGA-CN-5356-01 15 85197483 85197483 A T WDR73 Missense_Mutation p.L8Q 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-CN-5356-01 15 88472661 88472661 G A NTRK3 Missense_Mutation p.H632Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-CN-5356-01 15 93043765 93043765 G A C15orf32 3'UTR 0.42 TCGA-CN-5356-01 16 1374785 1374785 G T UBE2I Silent p.A156A 0.22 TCGA-CN-5356-01 16 20682863 20682863 A G ACSM1 Missense_Mutation p.F248L 0.32 tolerated(1) benign(0.01) TCGA-CN-5356-01 16 22271842 22271842 A T EEF2K Missense_Mutation p.N431Y 0.21 tolerated(0.08) possibly_damaging(0.8) TCGA-CN-5356-01 16 223546 223546 C A HBA2 Missense_Mutation p.L126M 0.36 tolerated(0.21) benign(0.084) TCGA-CN-5356-01 16 31373420 31373420 G A ITGAX Missense_Mutation p.G371R 0.24 deleterious(0.01) probably_damaging(1) TCGA-CN-5356-01 16 3487033 3487033 G A ZNF597 Silent p.R222R 0.29 TCGA-CN-5356-01 16 4310219 4310219 G A TFAP4 Missense_Mutation p.H232Y 0.41 tolerated(0.1) unknown(0) TCGA-CN-5356-01 16 9892263 9892263 C G GRIN2A Missense_Mutation p.E743Q 0.21 deleterious(0) possibly_damaging(0.527) TCGA-CN-5356-01 17 10429179 10429179 T A MYH2 Missense_Mutation p.Q1401L 0.16 tolerated(0.26) possibly_damaging(0.548) TCGA-CN-5356-01 17 11515024 11515024 G T DNAH9 Missense_Mutation p.M277I 0.57 benign(0.006) TCGA-CN-5356-01 17 21207776 21207776 C T MAP2K3 Missense_Mutation p.H203Y 0.11 tolerated(0.07) possibly_damaging(0.522) TCGA-CN-5356-01 17 27085474 27085474 G T FAM222B Silent p.G501G 0.32 TCGA-CN-5356-01 17 2995854 2995854 G A OR1D2 Missense_Mutation p.S146F 0.43 tolerated(0.14) benign(0.014) TCGA-CN-5356-01 17 36483635 36483635 T A GPR179 Silent p.T1939T 0.22 TCGA-CN-5356-01 17 37879629 37879629 G T ERBB2 Silent p.G668G 0.24 TCGA-CN-5356-01 17 3844430 3844430 C T ATP2A3 Silent p.T645T 0.15 TCGA-CN-5356-01 17 39502482 39502482 G A KRT33A Silent p.P368P 0.08 TCGA-CN-5356-01 17 41141370 41141370 G C RUNDC1 Missense_Mutation p.E224Q 0.26 tolerated(0.23) probably_damaging(0.999) TCGA-CN-5356-01 17 41141510 41141510 G C RUNDC1 Silent p.L270L 0.29 TCGA-CN-5356-01 17 45481247 45481247 T A EFCAB13 Nonsense_Mutation p.L674* 0.23 TCGA-CN-5356-01 17 48601147 48601147 T A MYCBPAP Splice_Site p.X588_splice 0.22 TCGA-CN-5356-01 17 53471830 53471830 G A MMD Silent p.F194F 0.22 TCGA-CN-5356-01 17 61972821 61972821 C A CSH1 Intron 0.27 TCGA-CN-5356-01 17 75488797 75488797 G C SEPT9 Missense_Mutation p.R492P 0.26 deleterious(0) probably_damaging(0.992) TCGA-CN-5356-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.48 tolerated(0.13) possibly_damaging(0.631) TCGA-CN-5356-01 18 21136302 21136302 G A NPC1 Missense_Mutation p.R411W 0.16 deleterious(0.02) possibly_damaging(0.453) TCGA-CN-5356-01 18 22806498 22806498 C T ZNF521 Missense_Mutation p.A462T 0.29 tolerated(0.64) benign(0.01) TCGA-CN-5356-01 18 25585919 25585919 C T CDH2 Silent p.V247V 0.32 TCGA-CN-5356-01 18 30093472 30093472 A G WBP11P1 RNA 0.15 TCGA-CN-5356-01 18 50278744 50278744 G T DCC Nonsense_Mutation p.G138* 0.30 TCGA-CN-5356-01 18 59170350 59170350 C G CDH20 Missense_Mutation p.Q276E 0.13 tolerated(0.05) probably_damaging(0.936) TCGA-CN-5356-01 18 6980533 6980533 T A LAMA1 Missense_Mutation p.R1998S 0.28 tolerated(0.71) benign(0.009) TCGA-CN-5356-01 18 72247436 72247436 T C CNDP1 Missense_Mutation p.L413P 0.35 tolerated(0.2) possibly_damaging(0.753) TCGA-CN-5356-01 18 8069752 8069752 G C PTPRM Missense_Mutation p.E401Q 0.28 deleterious(0.01) benign(0.091) TCGA-CN-5356-01 19 11144078 11144078 A G SMARCA4 Missense_Mutation p.Y1220C 0.14 probably_damaging(0.989) TCGA-CN-5356-01 19 11591486 11591486 G T ELAVL3 5'UTR 0.14 TCGA-CN-5356-01 19 11979453 11979454 - T ZNF439 3'UTR 0.22 TCGA-CN-5356-01 19 1438392 1438392 G C RPS15 5'UTR 0.28 TCGA-CN-5356-01 19 2109208 2109208 T C AP3D1 Splice_Site p.X1117_splice 0.29 TCGA-CN-5356-01 19 21131809 21131809 A T ZNF85 Missense_Mutation p.R163S 0.08 tolerated(0.07) possibly_damaging(0.457) TCGA-CN-5356-01 19 21720875 21720875 G T ZNF429 Missense_Mutation p.G674C 0.14 deleterious_low_confidence(0) benign(0.354) TCGA-CN-5356-01 19 21992324 21992324 T G ZNF43 Missense_Mutation p.K172T 0.06 deleterious(0.02) probably_damaging(0.981) TCGA-CN-5356-01 19 2226522 2226522 T C DOT1L Silent p.G1334G 0.10 TCGA-CN-5356-01 19 22363959 22363959 T C ZNF676 Missense_Mutation p.Y187C 0.14 deleterious(0) possibly_damaging(0.65) TCGA-CN-5356-01 19 22939865 22939865 T C ZNF99 3'Flank 0.15 TCGA-CN-5356-01 19 31039729 31039729 T C ZNF536 Missense_Mutation p.M1068T 0.18 tolerated_low_confidence(0.61) benign(0) TCGA-CN-5356-01 19 34887334 34887334 A T GPI Missense_Mutation p.Q408H 0.28 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-CN-5356-01 19 35842987 35842987 C G FFAR1 Missense_Mutation p.S178C 0.11 tolerated(0.12) possibly_damaging(0.667) TCGA-CN-5356-01 19 38572979 38572979 G T SIPA1L3 Missense_Mutation p.K258N 0.32 tolerated(0.09) benign(0.04) TCGA-CN-5356-01 19 42730364 42730364 A G ZNF526 Silent p.L603L 0.18 TCGA-CN-5356-01 19 4504669 4504669 C T PLIN4 Silent p.R1292R 0.27 TCGA-CN-5356-01 19 53473690 53473690 A G ZNF702P RNA 0.12 TCGA-CN-5356-01 19 54257280 54257280 T C MIR527 RNA 0.28 TCGA-CN-5356-01 19 54723084 54723084 C G LILRB3 Missense_Mutation p.G447A 0.37 tolerated(0.06) possibly_damaging(0.904) TCGA-CN-5356-01 19 54849458 54849458 G C LILRA4 Nonsense_Mutation p.S135* 0.10 TCGA-CN-5356-01 19 55224719 55224719 T C LILRP2 RNA 0.45 TCGA-CN-5356-01 19 58565248 58565248 C A ZSCAN1 Silent p.P352P 0.12 TCGA-CN-5356-01 19 58864486 58864486 G A A1BG Nonsense_Mutation p.Q50* 0.49 TCGA-CN-5356-01 19 6913820 6913820 G T EMR1 Missense_Mutation p.A427S 0.24 tolerated(0.12) benign(0.003) TCGA-CN-5356-01 19 7676418 7676418 C T CAMSAP3 Missense_Mutation p.S407F 0.09 deleterious(0.02) probably_damaging(0.968) TCGA-CN-5356-01 19 8138159 8138159 C A FBN3 Silent p.S2575S 0.08 TCGA-CN-5356-01 19 8587614 8587614 G A MYO1F Missense_Mutation p.P985L 0.19 tolerated(0.06) benign(0.001) TCGA-CN-5356-01 19 9324750 9324750 C A OR7D4 Missense_Mutation p.G255V 0.18 tolerated(0.06) benign(0.12) TCGA-CN-5356-01 1 101004651 101004651 C A GPR88 Silent p.I43I 0.12 TCGA-CN-5356-01 1 104114736 104114736 C G AMY2B Missense_Mutation p.S58C 0.15 deleterious(0.01) probably_damaging(1) TCGA-CN-5356-01 1 104115822 104115822 T C AMY2B Silent p.F151F 0.08 TCGA-CN-5356-01 1 107600360 107600360 C G PRMT6 Missense_Mutation p.I341M 0.16 deleterious(0.01) possibly_damaging(0.887) TCGA-CN-5356-01 1 148932792 148932792 G T RP11-14N7.2 RNA 0.04 TCGA-CN-5356-01 1 156641773 156641773 A G NES Missense_Mutation p.L736P 0.24 tolerated(0.09) possibly_damaging(0.542) TCGA-CN-5356-01 1 1572346 1572346 C T CDK11B Silent p.A574A 0.41 TCGA-CN-5356-01 1 158389862 158389862 G C OR10K2 Missense_Mutation p.N265K 0.29 tolerated(0.78) benign(0.201) TCGA-CN-5356-01 1 158585170 158585170 C T SPTA1 Silent p.A2208A 0.32 TCGA-CN-5356-01 1 158669837 158669837 G C OR6K2 Silent p.V202V 0.21 TCGA-CN-5356-01 1 1586916 1586916 C A CDK11B Missense_Mutation p.R45L 0.39 probably_damaging(0.941) TCGA-CN-5356-01 1 159897613 159897613 G A IGSF9 Silent p.L1099L 0.23 TCGA-CN-5356-01 1 165380003 165380003 C A RXRG Missense_Mutation p.W283C 0.12 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 1 165380004 165380004 C T RXRG Nonsense_Mutation p.W283* 0.12 TCGA-CN-5356-01 1 169698381 169698381 G - SELE Frame_Shift_Del p.Q346Rfs*33 0.17 TCGA-CN-5356-01 1 173579278 173579278 G A ANKRD45 3'UTR 0.16 TCGA-CN-5356-01 1 180165686 180165686 G T QSOX1 Missense_Mutation p.M586I 0.25 tolerated(0.2) benign(0.002) TCGA-CN-5356-01 1 183105651 183105651 T G LAMC1 Silent p.A1415A 0.07 TCGA-CN-5356-01 1 197128771 197128771 C T ZBTB41 Silent p.Q816Q 0.29 TCGA-CN-5356-01 1 197390919 197390919 C T CRB1 Missense_Mutation p.T654I 0.23 tolerated(0.3) benign(0.049) TCGA-CN-5356-01 1 197404293 197404293 A G CRB1 Missense_Mutation p.I1100M 0.28 deleterious(0.01) probably_damaging(0.978) TCGA-CN-5356-01 1 201839980 201839980 C T IPO9 Silent p.V801V 0.15 TCGA-CN-5356-01 1 206648211 206648211 G A IKBKE Missense_Mutation p.G78R 0.11 deleterious(0.05) possibly_damaging(0.595) TCGA-CN-5356-01 1 212118271 212118271 A G INTS7 Missense_Mutation p.I819T 0.24 deleterious(0) possibly_damaging(0.471) TCGA-CN-5356-01 1 216074210 216074210 G A USH2A Silent p.A2446A 0.20 TCGA-CN-5356-01 1 232941433 232941433 G C MAP10 Missense_Mutation p.A222P 0.19 tolerated(1) benign(0) TCGA-CN-5356-01 1 237666648 237666648 A G RYR2 Missense_Mutation p.Y819C 0.19 possibly_damaging(0.884) TCGA-CN-5356-01 1 237935319 237935319 G A RYR2 Silent p.Q3855Q 0.36 TCGA-CN-5356-01 1 247978121 247978121 C - OR14A16 Frame_Shift_Del p.G304Efs*? 0.23 TCGA-CN-5356-01 1 32221927 32221927 G T BAI2 Missense_Mutation p.R171S 0.10 tolerated(0.7) benign(0.343) TCGA-CN-5356-01 1 36552864 36552864 G T TEKT2 Silent p.L269L 0.19 TCGA-CN-5356-01 1 43296085 43296085 G T ERMAP Intron 0.14 TCGA-CN-5356-01 1 44467985 44467985 C T SLC6A9 Missense_Mutation p.R394Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-5356-01 1 57537304 57537304 A G DAB1 Missense_Mutation p.V150A 0.30 deleterious(0.01) probably_damaging(0.949) TCGA-CN-5356-01 1 70555441 70555441 T C LRRC7 Missense_Mutation p.L1457P 0.17 deleterious(0) probably_damaging(0.984) TCGA-CN-5356-01 1 70611531 70611531 T A LRRC40 Missense_Mutation p.K587N 0.09 deleterious(0) probably_damaging(0.95) TCGA-CN-5356-01 1 71542527 71542527 C A ZRANB2 Missense_Mutation p.E84D 0.08 tolerated(0.09) benign(0.039) TCGA-CN-5356-01 1 75055489 75055489 C A C1orf173 Missense_Mutation p.V668F 0.12 tolerated(0.07) probably_damaging(0.933) TCGA-CN-5356-01 1 77094330 77094330 T C ST6GALNAC3 Missense_Mutation p.Y253H 0.19 probably_damaging(1) TCGA-CN-5356-01 1 85020670 85020670 G C CTBS 3'UTR 0.33 TCGA-CN-5356-01 1 86426969 86426969 A G COL24A1 Missense_Mutation p.V842A 0.24 tolerated(0.73) benign(0.338) TCGA-CN-5356-01 1 91182748 91182748 G T BARHL2 Missense_Mutation p.T2K 0.11 tolerated_low_confidence(0.11) benign(0.092) TCGA-CN-5356-01 1 91781966 91781966 A T HFM1 Missense_Mutation p.D960E 0.28 deleterious(0.04) benign(0.222) TCGA-CN-5356-01 1 95322999 95322999 T A SLC44A3 Missense_Mutation p.I394N 0.29 deleterious(0) probably_damaging(0.972) TCGA-CN-5356-01 1 95332973 95332973 G C SLC44A3 Missense_Mutation p.Q494H 0.12 deleterious(0.04) benign(0.208) TCGA-CN-5356-01 20 36954720 36954720 C A BPI Silent p.T353T 0.36 TCGA-CN-5356-01 20 44163052 44163052 C G WFDC6 3'UTR 0.39 TCGA-CN-5356-01 20 45131697 45131697 T C ZNF334 Missense_Mutation p.D94G 0.55 tolerated(0.24) benign(0.002) TCGA-CN-5356-01 20 61943100 61943100 C A COL20A1 Missense_Mutation p.P555T 0.36 tolerated(0.52) benign(0.01) TCGA-CN-5356-01 21 10934071 10934071 G C TPTE Missense_Mutation p.I302M 0.12 tolerated(0.07) possibly_damaging(0.643) TCGA-CN-5356-01 21 43766469 43766469 A T TFF2 3'UTR 0.29 TCGA-CN-5356-01 22 26422890 26422890 C A MYO18B Missense_Mutation p.A2317D 0.26 tolerated(0.32) benign(0.109) TCGA-CN-5356-01 22 29446545 29446546 - G ZNRF3 Frame_Shift_Ins p.S795Qfs*6 0.19 TCGA-CN-5356-01 22 32625260 32625260 C T SLC5A4 Missense_Mutation p.A401T 0.28 deleterious(0.01) possibly_damaging(0.869) TCGA-CN-5356-01 22 37708147 37708147 C A CYTH4 Silent p.G348G 0.15 TCGA-CN-5356-01 22 39421332 39421332 T C APOBEC3D Silent p.R156R 0.44 TCGA-CN-5356-01 22 39883967 39883967 G A MGAT3 Silent p.P205P 0.26 TCGA-CN-5356-01 22 50656953 50656953 C T TUBGCP6 Missense_Mutation p.A1640T 0.15 tolerated(1) benign(0.005) TCGA-CN-5356-01 2 103335339 103335339 C T MFSD9 Missense_Mutation p.G322D 0.15 deleterious(0) probably_damaging(0.996) TCGA-CN-5356-01 2 127957114 127957114 G A CYP27C1 Silent p.S130S 0.39 TCGA-CN-5356-01 2 136374308 136374308 A C R3HDM1 Missense_Mutation p.E95A 0.28 deleterious(0.02) possibly_damaging(0.524) TCGA-CN-5356-01 2 141032117 141032117 C T LRP1B Missense_Mutation p.D4340N 0.45 possibly_damaging(0.539) TCGA-CN-5356-01 2 141108504 141108504 T A LRP1B Missense_Mutation p.E3918D 0.48 benign(0.217) TCGA-CN-5356-01 2 15567910 15567910 C A NBAS Missense_Mutation p.G783V 0.18 tolerated(0.08) benign(0.122) TCGA-CN-5356-01 2 160084427 160084427 T A TANC1 Nonsense_Mutation p.L1334* 0.52 TCGA-CN-5356-01 2 170598005 170598005 G A KLHL23 Missense_Mutation p.D442N 0.09 tolerated(0.26) possibly_damaging(0.821) TCGA-CN-5356-01 2 179582426 179582426 G T TTN Missense_Mutation p.S8392Y 0.41 TCGA-CN-5356-01 2 180846600 180846600 C A CWC22 Missense_Mutation p.D111Y 0.16 deleterious(0) possibly_damaging(0.75) TCGA-CN-5356-01 2 189927938 189927938 T A COL5A2 Missense_Mutation p.Q610L 0.12 possibly_damaging(0.66) TCGA-CN-5356-01 2 196759837 196759837 A G DNAH7 Missense_Mutation p.F1587L 0.41 tolerated(0.19) benign(0.036) TCGA-CN-5356-01 2 210558740 210558740 G C MAP2 Missense_Mutation p.G616R 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.772) TCGA-CN-5356-01 2 210640627 210640627 G A UNC80 Silent p.V52V 0.46 TCGA-CN-5356-01 2 215891574 215891574 C T ABCA12 Missense_Mutation p.V384M 0.32 tolerated(0.09) benign(0.018) TCGA-CN-5356-01 2 222307601 222307602 - A EPHA4 Frame_Shift_Ins p.M674Ifs*5 0.11 TCGA-CN-5356-01 2 224462778 224462778 C G SCG2 Missense_Mutation p.R408T 0.48 tolerated(0.09) benign(0) TCGA-CN-5356-01 2 225651808 225651808 T C DOCK10 Silent p.K1862K 0.50 TCGA-CN-5356-01 2 228337216 228337216 C G AGFG1 Missense_Mutation p.R27G 0.46 deleterious(0) probably_damaging(0.968) TCGA-CN-5356-01 2 27281352 27281352 C T AGBL5 Missense_Mutation p.L586F 0.29 deleterious(0.01) possibly_damaging(0.665) TCGA-CN-5356-01 2 32770763 32770763 G T BIRC6 Missense_Mutation p.V4216F 0.24 probably_damaging(0.999) TCGA-CN-5356-01 2 5832931 5832931 C T SOX11 Silent p.F26F 0.19 TCGA-CN-5356-01 2 73747023 73747023 A G ALMS1 Missense_Mutation p.N3220D 0.13 probably_damaging(0.94) TCGA-CN-5356-01 2 87016514 87016514 C T CD8A Nonsense_Mutation p.W186* 0.21 TCGA-CN-5356-01 2 88482287 88482287 T A THNSL2 Missense_Mutation p.I291N 0.24 deleterious(0) possibly_damaging(0.863) TCGA-CN-5356-01 2 99909015 99909015 G T LYG1 Missense_Mutation p.H44Q 0.17 tolerated(0.3) benign(0.008) TCGA-CN-5356-01 3 119133831 119133831 C T ARHGAP31 Missense_Mutation p.P1019S 0.17 tolerated_low_confidence(0.44) benign(0.008) TCGA-CN-5356-01 3 124438313 124438313 C T RP11-71H17.7 5'Flank 0.40 TCGA-CN-5356-01 3 128711936 128711937 - G KIAA1257 Frame_Shift_Ins p.H71Pfs*28 0.29 TCGA-CN-5356-01 3 131404769 131404769 T A CPNE4 Missense_Mutation p.I181F 0.21 tolerated(1) benign(0.003) TCGA-CN-5356-01 3 134851723 134851723 G C EPHB1 Missense_Mutation p.V377L 0.10 tolerated(0.17) benign(0.311) TCGA-CN-5356-01 3 13916474 13916474 G A WNT7A Missense_Mutation p.R90C 0.29 deleterious(0.01) possibly_damaging(0.849) TCGA-CN-5356-01 3 140123507 140123507 T C CLSTN2 Missense_Mutation p.L179P 0.22 deleterious(0) probably_damaging(0.997) TCGA-CN-5356-01 3 142141448 142141448 C T XRN1 Missense_Mutation p.V315I 0.37 tolerated(1) benign(0) TCGA-CN-5356-01 3 142217599 142217599 A T ATR Missense_Mutation p.W1800R 0.35 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 3 145828169 145828169 T G PLOD2 Missense_Mutation p.K135N 0.24 tolerated(0.16) possibly_damaging(0.908) TCGA-CN-5356-01 3 148558763 148558763 G T CPB1 Splice_Site p.X158_splice 0.16 TCGA-CN-5356-01 3 154013097 154013097 C T DHX36 Silent p.L527L 0.26 TCGA-CN-5356-01 3 154055728 154055728 T A GPR149 Silent p.L652L 0.24 TCGA-CN-5356-01 3 154859798 154859798 T G MME Missense_Mutation p.F326V 0.29 deleterious(0) possibly_damaging(0.73) TCGA-CN-5356-01 3 158072664 158072664 A C RSRC1 Missense_Mutation p.K184Q 0.18 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CN-5356-01 3 179322426 179322426 T C MRPL47 5'UTR 0.16 TCGA-CN-5356-01 3 179501966 179501966 G A USP13 3'UTR 0.27 TCGA-CN-5356-01 3 179593166 179593166 C G PEX5L Missense_Mutation p.R202T 0.17 deleterious_low_confidence(0.01) benign(0.277) TCGA-CN-5356-01 3 186257301 186257301 C T CRYGS Missense_Mutation p.R36H 0.21 deleterious(0.04) benign(0.157) TCGA-CN-5356-01 3 193007781 193007782 - G ATP13A5 Frame_Shift_Ins p.L973Ffs*31 0.15 TCGA-CN-5356-01 3 2778011 2778011 A T CNTN4 Silent p.P56P 0.23 TCGA-CN-5356-01 3 40275391 40275391 C A MYRIP Silent p.V649V 0.23 TCGA-CN-5356-01 3 52558127 52558127 T C STAB1 Silent p.D2518D 0.13 TCGA-CN-5356-01 3 68055801 68055801 T C FAM19A1 Missense_Mutation p.L11P 0.12 tolerated_low_confidence(0.08) probably_damaging(0.979) TCGA-CN-5356-01 3 73433788 73433788 G A PDZRN3 Silent p.C643C 0.24 TCGA-CN-5356-01 3 77089996 77089996 T A ROBO2 Intron 0.12 TCGA-CN-5356-01 3 98217106 98217106 C T OR5K2 Silent p.I194I 0.36 TCGA-CN-5356-01 4 107844944 107844944 A G DKK2 3'UTR 0.43 TCGA-CN-5356-01 4 110445990 110445990 G A SEC24B Missense_Mutation p.G842D 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5356-01 4 114278087 114278087 C T ANK2 Silent p.I2771I 0.18 TCGA-CN-5356-01 4 123113395 123113395 G C KIAA1109 Missense_Mutation p.E305Q 0.20 benign(0.25) TCGA-CN-5356-01 4 123542011 123542011 A G IL21 Silent p.Y52Y 0.25 TCGA-CN-5356-01 4 123748456 123748456 A T FGF2 Missense_Mutation p.I176F 0.26 deleterious(0) probably_damaging(0.999) TCGA-CN-5356-01 4 126238150 126238150 G T FAT4 Missense_Mutation p.G195V 0.20 probably_damaging(0.998) TCGA-CN-5356-01 4 138452014 138452014 G A PCDH18 Missense_Mutation p.T410I 0.16 deleterious(0.01) possibly_damaging(0.781) TCGA-CN-5356-01 4 139981705 139981705 A G ELF2 Silent p.D298D 0.18 TCGA-CN-5356-01 4 142155086 142155086 G T ZNF330 Missense_Mutation p.L302F 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.5) TCGA-CN-5356-01 4 149357710 149357710 T C NR3C2 Silent p.V101V 0.20 TCGA-CN-5356-01 4 154649396 154649396 T C RNF175 Missense_Mutation p.R122G 0.30 deleterious(0.03) benign(0.099) TCGA-CN-5356-01 4 155156538 155156538 G C DCHS2 Nonsense_Mutation p.S2634* 0.33 TCGA-CN-5356-01 4 155156946 155156946 G A DCHS2 Missense_Mutation p.T2498I 0.21 tolerated(0.25) benign(0.004) TCGA-CN-5356-01 4 155665617 155665617 C G LRAT Missense_Mutation p.R47G 0.13 deleterious(0) probably_damaging(0.991) TCGA-CN-5356-01 4 158065104 158065104 G T GLRB Silent p.V299V 0.11 TCGA-CN-5356-01 4 158242729 158242729 G T GRIA2 Missense_Mutation p.G287V 0.09 deleterious(0.03) possibly_damaging(0.866) TCGA-CN-5356-01 4 158284070 158284070 G T GRIA2 Missense_Mutation p.E842D 0.35 tolerated(0.1) probably_damaging(0.999) TCGA-CN-5356-01 4 159076818 159076818 G A FAM198B Missense_Mutation p.T365I 0.12 deleterious(0.05) possibly_damaging(0.702) TCGA-CN-5356-01 4 159076833 159076833 G C FAM198B Missense_Mutation p.P360R 0.12 deleterious(0) possibly_damaging(0.904) TCGA-CN-5356-01 4 159136355 159136355 A G TMEM144 Missense_Mutation p.Q41R 0.12 deleterious(0) probably_damaging(0.997) TCGA-CN-5356-01 4 173852403 173852403 G T GALNTL6 Missense_Mutation p.G378V 0.30 deleterious(0) probably_damaging(0.993) TCGA-CN-5356-01 4 177052768 177052768 C T WDR17 Missense_Mutation p.P350L 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-5356-01 4 177098636 177098636 C A WDR17 Missense_Mutation p.S1227Y 0.16 deleterious(0.02) benign(0.197) TCGA-CN-5356-01 4 186294193 186294193 A G LRP2BP Missense_Mutation p.L207P 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-5356-01 4 187558038 187558039 - G FAT1 Frame_Shift_Ins p.K1225Qfs*13 0.21 TCGA-CN-5356-01 4 189068081 189068081 C A TRIML1 Missense_Mutation p.P321Q 0.30 tolerated(0.53) probably_damaging(1) TCGA-CN-5356-01 4 20550181 20550181 T A SLIT2 Missense_Mutation p.L806I 0.28 deleterious(0) probably_damaging(0.997) TCGA-CN-5356-01 4 22694648 22694648 C A GBA3 Missense_Mutation p.P4T 0.25 deleterious(0) unknown(0) TCGA-CN-5356-01 4 31144302 31144302 G T PCDH7 Missense_Mutation p.R1200L 0.11 deleterious(0.04) benign(0.008) TCGA-CN-5356-01 4 42403085 42403085 C G SHISA3 Missense_Mutation p.L112V 0.25 tolerated(1) benign(0.01) TCGA-CN-5356-01 4 42964954 42964954 A T GRXCR1 Missense_Mutation p.T144S 0.19 deleterious(0.05) probably_damaging(0.997) TCGA-CN-5356-01 4 54326987 54326987 A C LNX1 3'UTR 0.31 TCGA-CN-5356-01 4 62897294 62897294 T C LPHN3 Missense_Mutation p.F1118S 0.17 deleterious(0) probably_damaging(0.998) TCGA-CN-5356-01 4 90034966 90034966 A C TIGD2 Missense_Mutation p.K281Q 0.18 tolerated(0.28) benign(0.077) TCGA-CN-5356-01 4 90170592 90170592 G T GPRIN3 Missense_Mutation p.Q224K 0.33 deleterious(0.05) possibly_damaging(0.543) TCGA-CN-5356-01 4 954932 954932 G - DGKQ Frame_Shift_Del p.R878Efs*24 0.20 TCGA-CN-5356-01 5 101794169 101794169 G A SLCO6A1 Missense_Mutation p.R350C 0.14 tolerated(0.06) benign(0.064) TCGA-CN-5356-01 5 130815438 130815438 C A RAPGEF6 Nonsense_Mutation p.E617* 0.15 TCGA-CN-5356-01 5 132069961 132069961 T A KIF3A Missense_Mutation p.K72N 0.34 tolerated(0.09) benign(0.014) TCGA-CN-5356-01 5 137496708 137496708 G A BRD8 Nonsense_Mutation p.R767* 0.12 TCGA-CN-5356-01 5 140182431 140182431 C T PCDHA3 Missense_Mutation p.T550M 0.19 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-CN-5356-01 5 140250500 140250500 G T PCDHA11 Silent p.A604A 0.17 TCGA-CN-5356-01 5 140516465 140516465 C T PCDHB5 Silent p.A483A 0.29 TCGA-CN-5356-01 5 140718644 140718644 C T PCDHGA2 Missense_Mutation p.R36W 0.10 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-CN-5356-01 5 140811076 140811076 C A PCDHGA12 Missense_Mutation p.S250R 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.767) TCGA-CN-5356-01 5 141974899 141974899 G A FGF1 Nonsense_Mutation p.Q142* 0.12 TCGA-CN-5356-01 5 14678802 14678802 G T FAM105B Missense_Mutation p.S81I 0.19 deleterious(0) possibly_damaging(0.891) TCGA-CN-5356-01 5 150925209 150925209 C A FAT2 Nonsense_Mutation p.E1827* 0.36 TCGA-CN-5356-01 5 150934053 150934053 T C FAT2 Missense_Mutation p.D1272G 0.18 probably_damaging(0.954) TCGA-CN-5356-01 5 153372421 153372421 C A FAM114A2 3'UTR 0.42 TCGA-CN-5356-01 5 176666861 176666861 A T NSD1 Nonsense_Mutation p.K1433* 0.44 TCGA-CN-5356-01 5 177473958 177473958 A G FAM153C Intron 0.27 TCGA-CN-5356-01 5 178410115 178410115 G A GRM6 Silent p.C744C 0.09 TCGA-CN-5356-01 5 180048550 180048550 G A FLT4 Missense_Mutation p.S671L 0.14 tolerated(0.06) possibly_damaging(0.804) TCGA-CN-5356-01 5 180432345 180432345 C A BTNL3 Missense_Mutation p.L292M 0.10 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 5 23527819 23527819 C T PRDM9 Silent p.S874S 0.21 TCGA-CN-5356-01 5 26890582 26890582 C A CDH9 Nonsense_Mutation p.E449* 0.26 TCGA-CN-5356-01 5 34823760 34823760 C A RAI14 Missense_Mutation p.Q608K 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-CN-5356-01 5 43040127 43040127 A T ANXA2R Missense_Mutation p.C8S 0.21 tolerated(0.71) benign(0.01) TCGA-CN-5356-01 5 68473452 68473452 G A CCNB1 Silent p.K432K 0.13 TCGA-CN-5356-01 5 76607880 76607880 T A PDE8B Splice_Site p.X133_splice 0.13 TCGA-CN-5356-01 5 79029872 79029872 A T CMYA5 Nonsense_Mutation p.K1762* 0.13 TCGA-CN-5356-01 5 80363998 80363998 G A RASGRF2 Silent p.E181E 0.09 TCGA-CN-5356-01 5 884145 884145 C T BRD9 Missense_Mutation p.D292N 0.23 tolerated(0.11) possibly_damaging(0.904) TCGA-CN-5356-01 5 95764933 95764933 A G PCSK1 Missense_Mutation p.L90S 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-5356-01 6 106969128 106969128 C G AIM1 Missense_Mutation p.L941V 0.42 tolerated(0.15) benign(0.024) TCGA-CN-5356-01 6 111588223 111588223 C G KIAA1919 Nonsense_Mutation p.Y486* 0.25 TCGA-CN-5356-01 6 12125336 12125336 G A HIVEP1 Missense_Mutation p.G1770R 0.49 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 6 152702405 152702405 C G SYNE1 Silent p.G2915G 0.42 TCGA-CN-5356-01 6 154727662 154727662 G C CNKSR3 Missense_Mutation p.D498E 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-5356-01 6 167590618 167590618 C T TCP10L2 Missense_Mutation p.P165L 0.28 tolerated(0.19) possibly_damaging(0.73) TCGA-CN-5356-01 6 167791447 167791447 G A TCP10 Missense_Mutation p.P138L 0.15 tolerated(0.16) possibly_damaging(0.73) TCGA-CN-5356-01 6 22287700 22287700 C A PRL Missense_Mutation p.R205S 0.52 deleterious(0) possibly_damaging(0.877) TCGA-CN-5356-01 6 24876029 24876029 G T FAM65B 5'UTR 0.51 TCGA-CN-5356-01 6 26027337 26027337 G A HIST1H4B Silent p.S48S 0.16 TCGA-CN-5356-01 6 26087595 26087595 T C HFE 5'UTR 0.10 TCGA-CN-5356-01 6 26240930 26240930 C T HIST1H4F Missense_Mutation p.R93C 0.05 deleterious(0.04) possibly_damaging(0.823) TCGA-CN-5356-01 6 26545397 26545397 C A HMGN4 5'UTR 0.15 TCGA-CN-5356-01 6 29012622 29012622 C G OR2W1 Missense_Mutation p.E111Q 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5356-01 6 29141990 29141990 C A OR2J2 Missense_Mutation p.T193N 0.11 deleterious(0) probably_damaging(0.96) TCGA-CN-5356-01 6 29638476 29638476 A G MOG Splice_Site p.X237_splice 0.44 TCGA-CN-5356-01 6 30166209 30166209 C T TRIM26 Silent p.A177A 0.07 TCGA-CN-5356-01 6 31668718 31668718 C A ABHD16A Splice_Site p.X115_splice 0.12 TCGA-CN-5356-01 6 32180994 32180994 G A NOTCH4 Missense_Mutation p.P786S 0.46 tolerated(0.12) possibly_damaging(0.542) TCGA-CN-5356-01 6 35438521 35438521 A G RPL10A Silent p.L216L 0.48 TCGA-CN-5356-01 6 39838206 39838206 G T DAAM2 Missense_Mutation p.A322S 0.37 tolerated(0.5) probably_damaging(0.996) TCGA-CN-5356-01 6 39847198 39847198 G T DAAM2 Missense_Mutation p.R597L 0.47 deleterious(0.03) benign(0.055) TCGA-CN-5356-01 6 39855276 39855276 C T DAAM2 Silent p.S656S 0.16 TCGA-CN-5356-01 6 44922282 44922282 C T SUPT3H Missense_Mutation p.V226I 0.08 tolerated(0.15) benign(0.005) TCGA-CN-5356-01 6 46761196 46761196 G T MEP1A Missense_Mutation p.A21S 0.26 tolerated(0.3) benign(0.035) TCGA-CN-5356-01 6 47650333 47650333 A T GPR111 Missense_Mutation p.I680F 0.38 deleterious(0) probably_damaging(0.932) TCGA-CN-5356-01 6 66204988 66204988 C T EYS Missense_Mutation p.V106I 0.20 tolerated_low_confidence(0.09) possibly_damaging(0.893) TCGA-CN-5356-01 6 7569464 7569464 G T DSP Nonsense_Mutation p.E489* 0.48 TCGA-CN-5356-01 7 100806374 100806374 C G VGF Missense_Mutation p.R584P 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-CN-5356-01 7 102553619 102553619 G A FBXL13 Missense_Mutation p.R308W 0.15 deleterious(0) possibly_damaging(0.846) TCGA-CN-5356-01 7 103126772 103126772 G T RELN Silent p.T3285T 0.23 TCGA-CN-5356-01 7 103180756 103180756 C T RELN Missense_Mutation p.G2273D 0.24 tolerated(0.13) probably_damaging(1) TCGA-CN-5356-01 7 126698186 126698186 G A GRM8 Intron 0.20 TCGA-CN-5356-01 7 133749194 133749194 C A EXOC4 Missense_Mutation p.N946K 0.20 tolerated(0.07) benign(0.022) TCGA-CN-5356-01 7 139030441 139030441 G A C7orf55 Nonsense_Mutation p.W111* 0.10 TCGA-CN-5356-01 7 141754696 141754696 C A MGAM Missense_Mutation p.T1101K 0.24 deleterious(0) possibly_damaging(0.469) TCGA-CN-5356-01 7 142013211 142013211 A G TRBV4-1 Silent p.E22E 0.08 TCGA-CN-5356-01 7 142510365 142510365 G C TRBV30 Missense_Mutation p.L81V 0.12 deleterious(0.05) benign(0.192) TCGA-CN-5356-01 7 142880918 142880918 T A TAS2R39 Missense_Mutation p.F136Y 0.24 tolerated(0.33) probably_damaging(0.979) TCGA-CN-5356-01 7 143573297 143573297 T C FAM115A Silent p.T135T 0.32 TCGA-CN-5356-01 7 144096938 144096938 G T NOBOX Silent p.R356R 0.30 TCGA-CN-5356-01 7 154681008 154681008 C T DPP6 Silent p.S777S 0.31 TCGA-CN-5356-01 7 20793095 20793095 A G ABCB5 Missense_Mutation p.E1181G 0.18 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 7 27872583 27872583 T C JAZF1 Missense_Mutation p.I190V 0.36 deleterious(0.02) benign(0.026) TCGA-CN-5356-01 7 31378427 31378427 G A NEUROD6 Silent p.I152I 0.23 TCGA-CN-5356-01 7 33388738 33388738 C G BBS9 Missense_Mutation p.P463R 0.14 tolerated(0.29) benign(0.014) TCGA-CN-5356-01 7 42187878 42187878 C T GLI3 Missense_Mutation p.R105H 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CN-5356-01 7 82538228 82538228 C A PCLO Missense_Mutation p.V4468F 0.21 unknown(0) TCGA-CN-5356-01 7 83610727 83610727 C G SEMA3A Missense_Mutation p.G521A 0.34 deleterious(0) benign(0.048) TCGA-CN-5356-01 7 86394654 86394654 G A GRM3 Missense_Mutation p.G65R 0.21 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 7 86817562 86817562 C T DMTF1 Silent p.A452A 0.22 TCGA-CN-5356-01 7 893209 893209 G T SUN1 Missense_Mutation p.G406V 0.24 tolerated(0.27) benign(0.108) TCGA-CN-5356-01 7 91631698 91631698 G A AKAP9 Missense_Mutation p.E823K 0.24 benign(0.02) TCGA-CN-5356-01 8 101586020 101586020 C T SNX31 3'UTR 0.25 TCGA-CN-5356-01 8 113395840 113395840 T C CSMD3 Missense_Mutation p.Y1996C 0.29 deleterious(0) probably_damaging(0.957) TCGA-CN-5356-01 8 11666366 11666366 G A FDFT1 Missense_Mutation p.A55T 0.41 deleterious(0.02) benign(0.217) TCGA-CN-5356-01 8 122626624 122626624 C T HAS2 Missense_Mutation p.G462R 0.32 deleterious(0) probably_damaging(0.993) TCGA-CN-5356-01 8 125052147 125052147 C T FER1L6 Missense_Mutation p.A830V 0.39 tolerated(0.05) possibly_damaging(0.768) TCGA-CN-5356-01 8 133622460 133622460 A G LRRC6 Silent p.S364S 0.19 TCGA-CN-5356-01 8 144378710 144378710 G A ZNF696 Missense_Mutation p.G289R 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-CN-5356-01 8 145008864 145008864 A T PLEC Missense_Mutation p.M464K 0.32 unknown(0) TCGA-CN-5356-01 8 24193130 24193130 C A ADAM28 Missense_Mutation p.Q515K 0.20 deleterious(0) probably_damaging(0.994) TCGA-CN-5356-01 8 24771549 24771549 G T NEFM Silent p.S81S 0.28 TCGA-CN-5356-01 8 30889548 30889548 G A PURG Nonsense_Mutation p.R251* 0.28 TCGA-CN-5356-01 8 52336292 52336292 C G PXDNL Splice_Site p.X547_splice 0.15 TCGA-CN-5356-01 8 64098988 64098988 G A YTHDF3 Missense_Mutation p.G139E 0.23 deleterious(0.04) probably_damaging(0.986) TCGA-CN-5356-01 8 68123821 68123821 A G ARFGEF1 Silent p.I1572I 0.36 TCGA-CN-5356-01 8 8175731 8175732 - C SGK223 Frame_Shift_Ins p.A1385Gfs*59 0.40 TCGA-CN-5356-01 8 8235565 8235565 G C SGK223 Silent p.G118G 0.21 TCGA-CN-5356-01 8 8998511 8998511 A T PPP1R3B Missense_Mutation p.N217K 0.26 tolerated(0.65) benign(0.061) TCGA-CN-5356-01 8 91937823 91937823 C T NECAB1 Silent p.R185R 0.32 TCGA-CN-5356-01 8 93023240 93023240 G A RUNX1T1 Missense_Mutation p.P194L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CN-5356-01 9 107332082 107332082 T G OR13C8 Missense_Mutation p.L212V 0.27 deleterious(0.04) possibly_damaging(0.658) TCGA-CN-5356-01 9 112898525 112898525 T C PALM2-AKAP2 Missense_Mutation p.I234T 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-CN-5356-01 9 113168483 113168483 C - SVEP1 Frame_Shift_Del p.A3133Qfs*12 0.35 TCGA-CN-5356-01 9 117848972 117848972 G T TNC Nonsense_Mutation p.C346* 0.16 TCGA-CN-5356-01 9 125551651 125551651 C T OR5C1 Missense_Mutation p.A147V 0.35 tolerated(0.54) benign(0.011) TCGA-CN-5356-01 9 125659806 125659806 C T RC3H2 5'UTR 0.18 TCGA-CN-5356-01 9 126776323 126776323 G T LHX2 Silent p.A68A 0.16 TCGA-CN-5356-01 9 133542106 133542106 C A PRDM12 Missense_Mutation p.T112N 0.23 deleterious(0) probably_damaging(0.997) TCGA-CN-5356-01 9 139748462 139748462 C T MAMDC4 Nonsense_Mutation p.R202* 0.16 TCGA-CN-5356-01 9 18889684 18889684 C G ADAMTSL1 Missense_Mutation p.C1527W 0.41 deleterious(0) probably_damaging(0.999) TCGA-CN-5356-01 9 21141013 21141013 C G IFNW1 Missense_Mutation p.R186T 0.14 deleterious(0.03) benign(0.377) TCGA-CN-5356-01 9 21186936 21186936 G C IFNA4 3'UTR 0.34 TCGA-CN-5356-01 9 23762230 23762230 C A ELAVL2 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0.01) benign(0.444) TCGA-CN-5356-01 9 27949987 27949987 T A LINGO2 Missense_Mutation p.K228I 0.18 deleterious(0.01) possibly_damaging(0.484) TCGA-CN-5356-01 9 5054676 5054676 G A JAK2 Missense_Mutation p.C243Y 0.30 deleterious(0) possibly_damaging(0.746) TCGA-CN-5356-01 9 5763586 5763586 A G KIAA1432 Silent p.T853T 0.20 TCGA-CN-5356-01 9 6805761 6805761 G A KDM4C Missense_Mutation p.A103T 0.32 deleterious(0.05) possibly_damaging(0.832) TCGA-CN-5356-01 9 84564610 84564610 G - RP11-383M4.6 Intron 0.35 TCGA-CN-5356-01 9 94487036 94487036 G T ROR2 Missense_Mutation p.D580E 0.10 tolerated(0.11) benign(0.11) TCGA-CN-5356-01 X 101818928 101818928 G A NXF4 RNA 0.59 TCGA-CN-5356-01 X 102332615 102332615 C T NXF3 Missense_Mutation p.S504N 0.64 tolerated(0.34) benign(0.034) TCGA-CN-5356-01 X 110385414 110385414 G C PAK3 Missense_Mutation p.G89A 0.49 deleterious(0) probably_damaging(0.926) TCGA-CN-5356-01 X 129171509 129171509 G A BCORL1 Splice_Site p.X1491_splice 0.52 TCGA-CN-5356-01 X 140994507 140994507 C T MAGEC1 Silent p.P439P 0.49 TCGA-CN-5356-01 X 142717807 142717807 A G SLITRK4 Missense_Mutation p.I373T 0.56 tolerated(0.7) benign(0.01) TCGA-CN-5356-01 X 148037158 148037158 G A AFF2 Nonsense_Mutation p.W528* 0.52 TCGA-CN-5356-01 X 151900745 151900745 T C MAGEA12 Missense_Mutation p.Q19R 0.26 tolerated(0.16) benign(0.007) TCGA-CN-5356-01 X 18602398 18602398 T G CDKL5 Missense_Mutation p.L160R 0.20 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-CN-5356-01 X 27998655 27998655 C T DCAF8L1 Missense_Mutation p.R266Q 0.38 deleterious(0.02) possibly_damaging(0.613) TCGA-CN-5356-01 X 30260456 30260456 C G MAGEB4 Silent p.T68T 0.55 TCGA-CN-5356-01 X 30268767 30268767 C A MAGEB1 Missense_Mutation p.P53T 0.56 deleterious(0.03) benign(0.068) TCGA-CN-5356-01 X 49075889 49075889 G T CACNA1F Missense_Mutation p.T866N 0.46 tolerated(0.21) benign(0.01) TCGA-CN-5356-01 X 51488052 51488052 A C GSPT2 Missense_Mutation p.T444P 0.53 deleterious(0) probably_damaging(0.961) TCGA-CN-5356-01 X 70321491 70321491 G C FOXO4 Missense_Mutation p.D471H 0.52 deleterious(0) probably_damaging(1) TCGA-CN-5356-01 X 79282239 79282239 G T TBX22 Missense_Mutation p.V224L 0.45 deleterious(0.03) possibly_damaging(0.516) TCGA-CN-5356-01 Y 16953106 16953106 A T NLGN4Y Silent p.T805T 0.56 TCGA-CN-5358-01 10 105176373 105176373 C T PDCD11 Silent p.F548F 0.07 TCGA-CN-5358-01 10 133769208 133769208 A G PPP2R2D Missense_Mutation p.Y337C 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-CN-5358-01 10 93602119 93602119 G A TNKS2 Missense_Mutation p.G677D 0.04 deleterious(0) probably_damaging(1) TCGA-CN-5358-01 11 118390377 118390377 G T KMT2A Missense_Mutation p.V3731L 0.09 probably_damaging(0.996) TCGA-CN-5358-01 11 123777472 123777472 T A OR8D4 Missense_Mutation p.C112S 0.06 tolerated(0.09) possibly_damaging(0.611) TCGA-CN-5358-01 12 56527377 56527377 C T ESYT1 Silent p.F433F 0.07 TCGA-CN-5358-01 14 21052160 21052160 G T RNASE11 Nonsense_Mutation p.C158* 0.09 TCGA-CN-5358-01 15 40591135 40591135 C T PLCB2 Silent p.K238K 0.05 TCGA-CN-5358-01 15 45008522 45008522 C T B2M Intron 0.06 TCGA-CN-5358-01 16 21136514 21136514 G A DNAH3 Silent p.S462S 0.07 TCGA-CN-5358-01 16 71319121 71319121 C A CMTR2 Missense_Mutation p.D235Y 0.20 deleterious(0) probably_damaging(1) TCGA-CN-5358-01 17 56247483 56247483 C A OR4D2 Missense_Mutation p.S156Y 0.09 deleterious(0) probably_damaging(0.991) TCGA-CN-5358-01 17 7578222 7578223 TC - TP53 Frame_Shift_Del p.R209Kfs*6 0.21 TCGA-CN-5358-01 17 79478103 79478103 G T ACTG1 Silent p.T278T 0.06 TCGA-CN-5358-01 19 22363822 22363822 C T ZNF676 Missense_Mutation p.A233T 0.06 tolerated(0.09) benign(0.038) TCGA-CN-5358-01 19 32923652 32923652 G C DPY19L3 Missense_Mutation p.E90Q 0.06 deleterious(0.03) probably_damaging(0.989) TCGA-CN-5358-01 19 54466602 54466602 G A CACNG8 Missense_Mutation p.G69E 0.13 tolerated_low_confidence(0.29) probably_damaging(0.969) TCGA-CN-5358-01 1 161697058 161697058 C G FCRLB Missense_Mutation p.S296C 0.05 deleterious(0.02) possibly_damaging(0.617) TCGA-CN-5358-01 1 182355001 182355001 C T GLUL Missense_Mutation p.G166E 0.07 deleterious(0) probably_damaging(1) TCGA-CN-5358-01 1 23520602 23520602 G C HTR1D Silent p.L37L 0.06 TCGA-CN-5358-01 1 65307005 65307005 C G JAK1 Missense_Mutation p.E858Q 0.10 tolerated(0.52) benign(0.052) TCGA-CN-5358-01 1 89597765 89597765 G A GBP7 3'UTR 0.08 TCGA-CN-5358-01 20 44519216 44519216 G C NEURL2 Missense_Mutation p.P139A 0.10 tolerated(0.54) benign(0.001) TCGA-CN-5358-01 2 170097425 170097425 G A LRP2 Intron 0.04 TCGA-CN-5358-01 2 179436108 179436108 G C TTN Silent p.V24917V 0.04 TCGA-CN-5358-01 2 225338834 225338834 C G CUL3 3'UTR 0.10 TCGA-CN-5358-01 2 234527158 234527158 A G UGT1A8 Missense_Mutation p.M269V 0.07 tolerated(0.1) benign(0.03) TCGA-CN-5358-01 3 47882464 47882464 G A DHX30 Missense_Mutation p.R155H 0.13 tolerated_low_confidence(0.06) benign(0.075) TCGA-CN-5358-01 3 52505975 52505975 T G NISCH Missense_Mutation p.C185W 0.07 deleterious(0) probably_damaging(0.971) TCGA-CN-5358-01 4 110834553 110834553 C T EGF Missense_Mutation p.S21L 0.05 tolerated(0.09) benign(0.019) TCGA-CN-5358-01 4 114279449 114279449 C T ANK2 Silent p.L3225L 0.08 TCGA-CN-5358-01 4 25678471 25678471 G A SLC34A2 3'UTR 0.35 TCGA-CN-5358-01 4 38138875 38138875 G A TBC1D1 Silent p.T1142T 0.10 TCGA-CN-5358-01 4 77692006 77692006 G C SHROOM3 Missense_Mutation p.E1859D 0.03 deleterious(0) probably_damaging(0.986) TCGA-CN-5358-01 4 786392 786392 G A CPLX1 Silent p.A12A 0.10 TCGA-CN-5358-01 5 140604785 140604801 GCGCCCTGCACCGAGCT CCGCCCCGCACCCAGCC PCDHB14 Missense_Mutation p.APCTEL570PPRTQP 0.14 TCGA-CN-5358-01 5 140740003 140740003 C G PCDHGB2 Missense_Mutation p.L101V 0.06 tolerated(0.3) benign(0.006) TCGA-CN-5358-01 5 140784546 140784546 G A PCDHGA9 Missense_Mutation p.G676D 0.07 tolerated_low_confidence(0.12) benign(0.026) TCGA-CN-5358-01 5 38944564 38944564 C A RICTOR Nonsense_Mutation p.E1633* 0.04 TCGA-CN-5358-01 6 150240360 150240360 G C RAET1G Silent p.L150L 0.09 TCGA-CN-5358-01 6 152163869 152163869 A G ESR1 Missense_Mutation p.Y197C 0.07 deleterious(0) probably_damaging(1) TCGA-CN-5358-01 6 64421505 64421505 C G PHF3 Missense_Mutation p.L1341V 0.06 deleterious(0) probably_damaging(0.998) TCGA-CN-5358-01 7 72040531 72040531 G T TYW1B Missense_Mutation p.D279E 0.04 tolerated(0.33) benign(0.13) TCGA-CN-5358-01 7 77885568 77885568 C A MAGI2 Missense_Mutation p.G580V 0.06 deleterious(0.01) possibly_damaging(0.448) TCGA-CN-5358-01 7 82785433 82785433 G T PCLO Missense_Mutation p.P175H 0.06 unknown(0) TCGA-CN-5358-01 7 88964688 88964688 A T ZNF804B Nonsense_Mutation p.K798* 0.11 TCGA-CN-5358-01 7 92761232 92761232 G T SAMD9L Nonsense_Mutation p.Y1351* 0.15 TCGA-CN-5358-01 9 36227321 36227321 T C GNE Missense_Mutation p.H433R 0.06 deleterious(0.01) probably_damaging(0.933) TCGA-CN-5358-01 9 87285586 87285586 A C NTRK2 5'UTR 0.07 TCGA-CN-5358-01 X 41000632 41000632 A G USP9X Missense_Mutation p.H370R 0.17 deleterious(0.01) possibly_damaging(0.696) TCGA-CN-5359-01 10 118100359 118100359 C A CCDC172 Silent p.T93T 0.08 TCGA-CN-5359-01 10 1405308 1405308 G A ADARB2 Missense_Mutation p.A331V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-CN-5359-01 10 38344239 38344239 A T ZNF33A Missense_Mutation p.H396L 0.07 tolerated(0.43) possibly_damaging(0.693) TCGA-CN-5359-01 10 44053142 44053142 G A ZNF239 Missense_Mutation p.S129L 0.04 tolerated(0.4) benign(0.004) TCGA-CN-5359-01 10 86012692 86012692 C A RGR Silent p.P150P 0.08 TCGA-CN-5359-01 10 87614257 87614257 C T GRID1 Missense_Mutation p.R410H 0.12 deleterious(0.01) possibly_damaging(0.568) TCGA-CN-5359-01 10 99416633 99416633 G A PI4K2A Missense_Mutation p.R245Q 0.18 deleterious(0.02) probably_damaging(0.973) TCGA-CN-5359-01 11 120352147 120352147 C T ARHGEF12 Silent p.P1472P 0.06 TCGA-CN-5359-01 11 124524555 124524555 G C SIAE Silent p.T180T 0.08 TCGA-CN-5359-01 11 134131756 134131756 A T ACAD8 Missense_Mutation p.K355M 0.07 deleterious(0) probably_damaging(1) TCGA-CN-5359-01 11 17981067 17981067 G A SERGEF Missense_Mutation p.P321S 0.12 tolerated(0.29) benign(0.038) TCGA-CN-5359-01 11 22296150 22296150 C A ANO5 Silent p.P757P 0.06 TCGA-CN-5359-01 11 48181492 48181492 A T PTPRJ Missense_Mutation p.E1150V 0.09 deleterious(0) probably_damaging(0.986) TCGA-CN-5359-01 11 5142432 5142432 C T OR52A4 RNA 0.09 TCGA-CN-5359-01 11 57003872 57003872 C G APLNR Missense_Mutation p.V203L 0.10 tolerated(1) benign(0.003) TCGA-CN-5359-01 11 58384739 58384739 G A ZFP91 Missense_Mutation p.D425N 0.07 deleterious(0) probably_damaging(0.982) TCGA-CN-5359-01 11 59943062 59943062 C T MS4A6A Missense_Mutation p.S149N 0.29 tolerated(0.9) benign(0.048) TCGA-CN-5359-01 11 6191298 6191298 A C OR52B2 Missense_Mutation p.F87V 0.09 deleterious(0) probably_damaging(0.997) TCGA-CN-5359-01 11 62415548 62415548 G A INTS5 Silent p.A668A 0.05 TCGA-CN-5359-01 11 73074856 73074856 G A ARHGEF17 Missense_Mutation p.A1771T 0.16 tolerated(0.16) benign(0.004) TCGA-CN-5359-01 11 92085715 92085715 T C FAT3 Missense_Mutation p.I146T 0.09 possibly_damaging(0.616) TCGA-CN-5359-01 12 105568055 105568055 C T APPL2 3'UTR 0.18 TCGA-CN-5359-01 12 120527826 120527826 A - CCDC64 Frame_Shift_Del p.D504Vfs*7 0.26 TCGA-CN-5359-01 12 43944862 43944862 G A ADAMTS20 Silent p.A101A 0.22 TCGA-CN-5359-01 12 6457162 6457162 T C SCNN1A Silent p.P688P 0.22 TCGA-CN-5359-01 12 6972476 6972481 GCCTTG - USP5 In_Frame_Del p.L631_G632del 0.19 TCGA-CN-5359-01 12 8926168 8926168 T C RIMKLB Missense_Mutation p.S317P 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.772) TCGA-CN-5359-01 13 38237583 38237583 C A TRPC4 Missense_Mutation p.R553I 0.14 tolerated(0.06) probably_damaging(0.964) TCGA-CN-5359-01 13 43918857 43918857 C T ENOX1 Missense_Mutation p.V285M 0.08 deleterious(0.04) possibly_damaging(0.564) TCGA-CN-5359-01 13 70456501 70456501 T A KLHL1 Missense_Mutation p.M381L 0.19 tolerated(0.39) benign(0.002) TCGA-CN-5359-01 13 72204713 72204713 T A DACH1 Missense_Mutation p.E369D 0.09 benign(0.036) TCGA-CN-5359-01 14 20404174 20404174 G T OR4K1 Missense_Mutation p.A117S 0.09 tolerated(0.55) benign(0.014) TCGA-CN-5359-01 14 50312960 50312960 C T NEMF Silent p.R85R 0.04 TCGA-CN-5359-01 14 57676773 57676773 T G EXOC5 Missense_Mutation p.L540F 0.15 deleterious(0.01) possibly_damaging(0.853) TCGA-CN-5359-01 14 69256577 69256577 A T ZFP36L1 Silent p.P230P 0.09 TCGA-CN-5359-01 14 78063666 78063666 C A SPTLC2 Nonsense_Mutation p.E64* 0.05 TCGA-CN-5359-01 15 23811027 23811027 C T MKRN3 Missense_Mutation p.P33L 0.09 deleterious(0.05) benign(0.003) TCGA-CN-5359-01 15 34355730 34355730 G T CHRM5 Missense_Mutation p.W271L 0.07 tolerated(0.12) probably_damaging(1) TCGA-CN-5359-01 15 40866110 40866110 C A RPUSD2 Missense_Mutation p.L430I 0.12 tolerated(0.51) benign(0.011) TCGA-CN-5359-01 15 62254687 62254701 ATACAAATCCAAATT - VPS13C In_Frame_Del p.N1158_Y1162del 0.14 TCGA-CN-5359-01 15 79254558 79254558 G T RASGRF1 Missense_Mutation p.D1250E 0.21 tolerated(0.05) benign(0.188) TCGA-CN-5359-01 15 80181668 80181668 G A ST20-MTHFS Missense_Mutation p.S25F 0.04 deleterious(0) probably_damaging(1) TCGA-CN-5359-01 15 91769847 91769847 C A SV2B Silent p.A118A 0.09 TCGA-CN-5359-01 16 110495 110495 C T RHBDF1 Missense_Mutation p.A534T 0.09 tolerated(0.55) benign(0.004) TCGA-CN-5359-01 16 16101762 16101762 C T ABCC1 Silent p.L46L 0.08 TCGA-CN-5359-01 16 24192240 24192240 C A PRKCB Silent p.I508I 0.10 TCGA-CN-5359-01 16 48399363 48399363 G A SIAH1 Missense_Mutation p.S9F 0.25 tolerated_low_confidence(0.18) unknown(0) TCGA-CN-5359-01 16 66837006 66837006 T C NAE1 Missense_Mutation p.E504G 0.10 deleterious(0) probably_damaging(0.99) TCGA-CN-5359-01 16 8866736 8866736 G A ABAT Missense_Mutation p.D306N 0.08 tolerated(0.11) benign(0.032) TCGA-CN-5359-01 17 26691847 26691847 C T VTN 3'Flank 0.06 TCGA-CN-5359-01 17 26862068 26862068 G T FOXN1 Silent p.L493L 0.26 TCGA-CN-5359-01 17 33767957 33767957 G T SLFN13 Missense_Mutation p.T784N 0.24 tolerated(1) benign(0.006) TCGA-CN-5359-01 17 34171147 34171147 G T TAF15 Missense_Mutation p.W358L 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-5359-01 17 38922712 38922712 C A KRT26 3'UTR 0.29 TCGA-CN-5359-01 17 42428419 42428419 C T GRN Silent p.S241S 0.05 TCGA-CN-5359-01 17 46607812 46607812 A C HOXB1 Missense_Mutation p.F152C 0.09 tolerated(0.11) possibly_damaging(0.855) TCGA-CN-5359-01 17 61987866 61987866 A C CSHL1 Missense_Mutation p.S74A 0.06 tolerated(0.17) possibly_damaging(0.815) TCGA-CN-5359-01 17 62144284 62144284 G C ERN1 Missense_Mutation p.H197D 0.07 deleterious(0) probably_damaging(0.996) TCGA-CN-5359-01 17 66303616 66303616 G A ARSG 5'UTR 0.05 TCGA-CN-5359-01 17 6690807 6690807 A G FBXO39 3'UTR 0.15 TCGA-CN-5359-01 17 7578247 7578247 A T TP53 Nonsense_Mutation p.L201* 0.22 TCGA-CN-5359-01 17 8170877 8170877 C T PFAS Silent p.D1092D 0.10 TCGA-CN-5359-01 18 29110982 29110982 C T DSG2 Silent p.D349D 0.26 TCGA-CN-5359-01 18 56278955 56278957 CTC TT ALPK2 Frame_Shift_Del p.E25Kfs*10 0.08 TCGA-CN-5359-01 18 64172035 64172035 G T CDH19 3'UTR 0.04 TCGA-CN-5359-01 18 64172036 64172036 A T CDH19 3'UTR 0.04 TCGA-CN-5359-01 19 10602764 10602764 G A KEAP1 Missense_Mutation p.R272C 0.12 deleterious(0) probably_damaging(0.916) TCGA-CN-5359-01 19 10822906 10822906 T G QTRT1 Missense_Mutation p.F239C 0.08 deleterious(0) probably_damaging(1) TCGA-CN-5359-01 19 11240185 11240185 A T LDLR Intron 0.12 TCGA-CN-5359-01 19 14627517 14627517 T C DNAJB1 Missense_Mutation p.I185V 0.08 deleterious(0.03) possibly_damaging(0.537) TCGA-CN-5359-01 19 19040165 19040165 C T HOMER3 3'UTR 0.10 TCGA-CN-5359-01 19 20728598 20728598 C G ZNF737 Missense_Mutation p.L137F 0.13 tolerated(0.12) probably_damaging(0.974) TCGA-CN-5359-01 19 3055690 3055690 G C AES Missense_Mutation p.A157G 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.609) TCGA-CN-5359-01 19 33370188 33370188 G A CEP89 Silent p.G744G 0.07 TCGA-CN-5359-01 19 41712380 41712380 C G CYP2S1 Missense_Mutation p.T501R 0.07 tolerated_low_confidence(0.35) benign(0.064) TCGA-CN-5359-01 19 4292705 4292705 C A TMIGD2 Missense_Mutation p.C247F 0.07 tolerated(0.08) possibly_damaging(0.831) TCGA-CN-5359-01 19 44933099 44933099 C A ZNF229 Missense_Mutation p.Q619H 0.06 deleterious(0) probably_damaging(0.985) TCGA-CN-5359-01 19 54946764 54946764 G A TTYH1 Missense_Mutation p.E390K 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-CN-5359-01 19 55105660 55105660 A T LILRA1 Splice_Site 0.10 TCGA-CN-5359-01 19 55815119 55815119 G A BRSK1 Missense_Mutation p.S404N 0.06 deleterious(0.03) benign(0.213) TCGA-CN-5359-01 19 57641043 57641043 C A USP29 Missense_Mutation p.Q334K 0.09 deleterious(0.02) benign(0.251) TCGA-CN-5359-01 19 57985605 57985605 C T ZNF772 Silent p.Q169Q 0.07 TCGA-CN-5359-01 19 58101682 58101682 G A ZIK1 Missense_Mutation p.R168H 0.06 tolerated(0.13) benign(0.057) TCGA-CN-5359-01 19 58132866 58132866 G A ZNF134 3'UTR 0.05 TCGA-CN-5359-01 19 7964965 7964965 C T LRRC8E Nonsense_Mutation p.Q520* 0.13 TCGA-CN-5359-01 19 8321168 8321168 C A CERS4 Missense_Mutation p.Q173K 0.12 deleterious(0) probably_damaging(0.994) TCGA-CN-5359-01 19 8436298 8436298 C A ANGPTL4 Missense_Mutation p.Q311K 0.09 tolerated(0.61) benign(0.002) TCGA-CN-5359-01 1 154199771 154199771 A C UBAP2L Missense_Mutation p.Q35P 0.08 deleterious(0) unknown(0) TCGA-CN-5359-01 1 159283758 159283758 G A OR10J3 Missense_Mutation p.S231L 0.22 deleterious(0.01) possibly_damaging(0.521) TCGA-CN-5359-01 1 159802746 159802746 T A SLAMF8 Missense_Mutation p.L150M 0.09 deleterious(0) probably_damaging(0.999) TCGA-CN-5359-01 1 169349768 169349768 A T BLZF1 Missense_Mutation p.N240Y 0.06 tolerated(1) benign(0.002) TCGA-CN-5359-01 1 211654485 211654485 G A RD3 Silent p.S91S 0.28 TCGA-CN-5359-01 1 216348688 216348688 A T USH2A Silent p.A1511A 0.07 TCGA-CN-5359-01 1 228465484 228465484 G C OBSCN Missense_Mutation p.V2691L 0.09 probably_damaging(0.997) TCGA-CN-5359-01 1 230898463 230898463 G A CAPN9 Missense_Mutation p.R156H 0.24 deleterious(0.03) probably_damaging(0.98) TCGA-CN-5359-01 1 24669215 24669215 G A GRHL3 Missense_Mutation p.R413Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-CN-5359-01 1 28862414 28862414 G A RCC1 Silent p.L262L 0.09 TCGA-CN-5359-01 1 44084958 44084958 G T PTPRF Splice_Site p.X1549_splice 0.11 TCGA-CN-5359-01 1 52289446 52289446 G A NRD1 Missense_Mutation p.T418M 0.06 deleterious(0) probably_damaging(0.985) TCGA-CN-5359-01 1 54417937 54417937 C T LRRC42 Missense_Mutation p.L89F 0.07 deleterious(0) probably_damaging(0.999) TCGA-CN-5359-01 1 7805922 7805922 C G CAMTA1 Missense_Mutation p.P1463R 0.13 deleterious(0.02) possibly_damaging(0.878) TCGA-CN-5359-01 1 85733597 85733597 C T BCL10 Missense_Mutation p.D139N 0.13 tolerated(0.46) benign(0.001) TCGA-CN-5359-01 20 11903518 11903518 C A BTBD3 Missense_Mutation p.S258Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-CN-5359-01 20 16359952 16359952 C T KIF16B Missense_Mutation p.E899K 0.06 deleterious_low_confidence(0.02) benign(0.068) TCGA-CN-5359-01 20 18038229 18038229 C T OVOL2 Missense_Mutation p.R17H 0.14 deleterious(0) probably_damaging(0.988) TCGA-CN-5359-01 20 25205950 25205950 G T ENTPD6 Silent p.L451L 0.20 TCGA-CN-5359-01 20 25666234 25666234 T - ZNF337 Frame_Shift_Del p.E74Rfs*64 0.19 TCGA-CN-5359-01 20 40739003 40739003 G A PTPRT Missense_Mutation p.P1075L 0.24 deleterious(0.01) possibly_damaging(0.864) TCGA-CN-5359-01 20 45725801 45725801 C T EYA2 Silent p.Y294Y 0.09 TCGA-CN-5359-01 21 28296445 28296445 C T ADAMTS5 Missense_Mutation p.R907Q 0.11 deleterious(0.03) possibly_damaging(0.453) TCGA-CN-5359-01 21 28296446 28296446 G T ADAMTS5 Silent p.R907R 0.11 TCGA-CN-5359-01 21 30380094 30380094 T A RWDD2B Missense_Mutation p.E238V 0.27 deleterious(0) probably_damaging(0.987) TCGA-CN-5359-01 22 30858091 30858091 G C SEC14L3 Missense_Mutation p.N251K 0.16 deleterious(0) benign(0.015) TCGA-CN-5359-01 22 41924695 41924695 C G ACO2 3'UTR 0.23 TCGA-CN-5359-01 2 141081587 141081587 C T LRP1B Missense_Mutation p.G4130E 0.05 probably_damaging(0.931) TCGA-CN-5359-01 2 152324520 152324520 C T RIF1 Missense_Mutation p.R2203C 0.12 deleterious(0) probably_damaging(0.983) TCGA-CN-5359-01 2 175450327 175450327 C G WIPF1 5'UTR 0.13 TCGA-CN-5359-01 2 175450340 175450340 C T WIPF1 Splice_Site 0.11 TCGA-CN-5359-01 2 179638332 179638332 T G TTN Missense_Mutation p.Q2484P 0.07 TCGA-CN-5359-01 2 179650801 179650801 C G TTN Missense_Mutation p.R715T 0.08 TCGA-CN-5359-01 2 185803488 185803488 T A ZNF804A Missense_Mutation p.F1122Y 0.09 deleterious(0) possibly_damaging(0.899) TCGA-CN-5359-01 2 24432687 24432687 C T ITSN2 Silent p.T1491T 0.04 TCGA-CN-5359-01 2 33784037 33784037 C T RASGRP3 Silent p.D668D 0.19 TCGA-CN-5359-01 2 46803235 46803235 G A RHOQ Missense_Mutation p.D71N 0.08 tolerated(0.07) benign(0.028) TCGA-CN-5359-01 2 47602414 47602414 C A EPCAM Missense_Mutation p.P156H 0.23 tolerated(0.17) benign(0.142) TCGA-CN-5359-01 2 74129609 74129609 G A ACTG2 Missense_Mutation p.M83I 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.717) TCGA-CN-5359-01 2 74699801 74699801 C A MRPL53 5'UTR 0.18 TCGA-CN-5359-01 2 99279521 99279521 G T MGAT4A Silent p.V175V 0.09 TCGA-CN-5359-01 3 138724783 138724783 C T PRR23A Missense_Mutation p.E110K 0.12 tolerated(0.06) possibly_damaging(0.904) TCGA-CN-5359-01 3 148880620 148880620 G C HPS3 Missense_Mutation p.K812N 0.12 tolerated(0.28) probably_damaging(0.978) TCGA-CN-5359-01 3 158787122 158787122 T C IQCJ 5'UTR 0.20 TCGA-CN-5359-01 3 184071144 184071144 C T CLCN2 Missense_Mutation p.S641N 0.16 tolerated(0.08) possibly_damaging(0.703) TCGA-CN-5359-01 3 194182898 194182898 T C ATP13A3 Missense_Mutation p.T8A 0.07 tolerated(0.07) benign(0.027) TCGA-CN-5359-01 3 49758486 49758487 - A RNF123 Nonsense_Mutation p.Y1258* 0.21 TCGA-CN-5359-01 3 97806357 97806357 G T OR5AC2 Missense_Mutation p.C114F 0.06 deleterious(0) possibly_damaging(0.835) TCGA-CN-5359-01 4 100232742 100232742 C T ADH1B Silent p.Q300Q 0.07 TCGA-CN-5359-01 4 100242501 100242501 T A ADH1B 5'UTR 0.20 TCGA-CN-5359-01 4 107016640 107016640 T A TBCK Missense_Mutation p.E857V 0.16 tolerated(0.26) benign(0.027) TCGA-CN-5359-01 4 110972591 110972591 C A ELOVL6 Missense_Mutation p.W234L 0.07 tolerated(0.24) benign(0.036) TCGA-CN-5359-01 4 114209630 114209630 C T ANK2 Silent p.N755N 0.17 TCGA-CN-5359-01 4 120190943 120190943 A G USP53 Silent p.Q462Q 0.05 TCGA-CN-5359-01 4 123147888 123147888 G C KIAA1109 Missense_Mutation p.Q940H 0.06 benign(0.176) TCGA-CN-5359-01 4 15716972 15716972 A G BST1 Missense_Mutation p.Y200C 0.14 deleterious(0) probably_damaging(1) TCGA-CN-5359-01 4 162307204 162307204 A G FSTL5 Missense_Mutation p.S747P 0.10 deleterious(0) probably_damaging(0.958) TCGA-CN-5359-01 4 187541443 187541443 G A FAT1 Silent p.V2099V 0.10 TCGA-CN-5359-01 4 39450327 39450327 G T KLB 3'UTR 0.10 TCGA-CN-5359-01 4 70713474 70713474 C G SULT1E1 Missense_Mutation p.W178S 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-CN-5359-01 4 94006200 94006200 C T GRID2 Missense_Mutation p.T100M 0.05 tolerated(0.23) benign(0.013) TCGA-CN-5359-01 5 102363940 102363940 G C PAM Missense_Mutation p.R915T 0.14 deleterious(0) probably_damaging(0.974) TCGA-CN-5359-01 5 109153015 109153015 C T MAN2A1 Missense_Mutation p.S662L 0.07 deleterious(0.01) possibly_damaging(0.836) TCGA-CN-5359-01 5 11364871 11364871 G T CTNND2 Missense_Mutation p.L437I 0.08 tolerated(0.32) benign(0.101) TCGA-CN-5359-01 5 132158993 132158993 G A SHROOM1 Silent p.R725R 0.07 TCGA-CN-5359-01 5 158710239 158710239 C T UBLCP1 Missense_Mutation p.A274V 0.11 deleterious(0) benign(0.313) TCGA-CN-5359-01 5 161116008 161116008 G A GABRA6 Silent p.K93K 0.07 TCGA-CN-5359-01 5 178310010 178310010 C T ZNF354B Missense_Mutation p.S186L 0.10 tolerated(0.59) benign(0.001) TCGA-CN-5359-01 5 33576465 33576465 G T ADAMTS12 Silent p.P1222P 0.23 TCGA-CN-5359-01 5 38510706 38510706 T C LIFR Missense_Mutation p.H284R 0.05 tolerated(0.68) benign(0) TCGA-CN-5359-01 5 50679347 50679347 C A ISL1 5'UTR 0.25 TCGA-CN-5359-01 5 71756160 71756160 C T ZNF366 Silent p.R388R 0.12 TCGA-CN-5359-01 6 112375526 112375526 T C WISP3 Missense_Mutation p.L7P 0.07 tolerated_low_confidence(0.07) probably_damaging(0.955) TCGA-CN-5359-01 6 132649650 132649650 G A MOXD1 Silent p.S249S 0.09 TCGA-CN-5359-01 6 139134477 139134477 G T ECT2L Missense_Mutation p.Q22H 0.08 deleterious(0.03) possibly_damaging(0.815) TCGA-CN-5359-01 6 151089868 151089868 T G PLEKHG1 Missense_Mutation p.F169C 0.13 deleterious(0) probably_damaging(0.991) TCGA-CN-5359-01 6 161139390 161139390 C T PLG Silent p.R284R 0.09 TCGA-CN-5359-01 6 26199981 26199983 CTT - HIST1H2BF In_Frame_Del p.F66del 0.10 TCGA-CN-5359-01 6 26271590 26271590 G A HIST1H3G Missense_Mutation p.A8V 0.07 deleterious_low_confidence(0.01) benign(0) TCGA-CN-5359-01 6 33371721 33371721 C T KIFC1 Missense_Mutation p.H191Y 0.20 deleterious(0.04) benign(0.102) TCGA-CN-5359-01 6 46644143 46644143 G A SLC25A27 Nonsense_Mutation p.W308* 0.12 TCGA-CN-5359-01 6 56480608 56480608 T C DST Intron 0.15 TCGA-CN-5359-01 6 57048922 57048922 A G BAG2 Silent p.L190L 0.16 TCGA-CN-5359-01 7 115624314 115624314 A G TFEC Splice_Site p.X60_splice 0.07 TCGA-CN-5359-01 7 128655071 128655071 C A TNPO3 Missense_Mutation p.D172Y 0.09 deleterious(0) benign(0.091) TCGA-CN-5359-01 7 131189049 131189049 G C PODXL 3'UTR 0.16 TCGA-CN-5359-01 7 142423604 142423604 G A TRBV27 Missense_Mutation p.R87Q 0.10 TCGA-CN-5359-01 7 50468217 50468217 C T IKZF1 Silent p.H442H 0.19 TCGA-CN-5359-01 7 50514478 50514478 G C FIGNL1 Missense_Mutation p.R170G 0.12 tolerated(0.38) benign(0.016) TCGA-CN-5359-01 7 89903401 89903401 C A C7orf63 Missense_Mutation p.Q321K 0.09 tolerated(0.11) benign(0.441) TCGA-CN-5359-01 7 91730273 91730273 A C AKAP9 Missense_Mutation p.K3667T 0.16 probably_damaging(0.999) TCGA-CN-5359-01 7 94038715 94038715 G A COL1A2 Missense_Mutation p.G292S 0.08 unknown(0) TCGA-CN-5359-01 7 98655145 98655145 A C SMURF1 Missense_Mutation p.I78S 0.12 deleterious(0) probably_damaging(0.972) TCGA-CN-5359-01 8 110445377 110445377 G T PKHD1L1 Missense_Mutation p.G1091V 0.06 deleterious(0) probably_damaging(0.971) TCGA-CN-5359-01 8 144944117 144944117 C A EPPK1 Missense_Mutation p.C1102F 0.34 probably_damaging(0.972) TCGA-CN-5359-01 8 51449368 51449368 G T SNTG1 Missense_Mutation p.R227L 0.13 deleterious(0) probably_damaging(0.998) TCGA-CN-5359-01 8 72184055 72184055 T G EYA1 Missense_Mutation p.K302Q 0.07 deleterious(0.03) probably_damaging(0.962) TCGA-CN-5359-01 8 97251890 97251890 C G MTERFD1 Missense_Mutation p.K361N 0.13 deleterious(0) possibly_damaging(0.814) TCGA-CN-5359-01 9 119976896 119976896 G T ASTN2 Silent p.I252I 0.40 TCGA-CN-5359-01 9 125377720 125377720 G T OR1Q1 Missense_Mutation p.W235L 0.21 tolerated(0.08) benign(0.423) TCGA-CN-5359-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.45 TCGA-CN-5359-01 9 26913936 26913936 C A PLAA Missense_Mutation p.R499L 0.08 deleterious(0.04) benign(0.108) TCGA-CN-5359-01 9 98238315 98238315 C A PTCH1 Splice_Site p.X576_splice 0.36 TCGA-CN-5359-01 X 153716765 153716765 G A SLC10A3 Missense_Mutation p.P172L 0.43 tolerated(0.11) possibly_damaging(0.662) TCGA-CN-5359-01 X 77224298 77224298 G A PGAM4 3'UTR 0.17 TCGA-CN-5359-01 X 78216634 78216634 G T P2RY10 Missense_Mutation p.G206V 0.15 deleterious(0) probably_damaging(0.982) TCGA-CN-5360-01 10 118383495 118383495 A T PNLIPRP2 Missense_Mutation p.D30V 0.37 deleterious(0.01) possibly_damaging(0.847) TCGA-CN-5360-01 10 128974171 128974171 G C FAM196A Silent p.G163G 0.29 TCGA-CN-5360-01 10 135438781 135438781 T C FRG2B Missense_Mutation p.Q220R 0.28 tolerated(0.24) benign(0.056) TCGA-CN-5360-01 10 15649735 15649735 G T ITGA8 Missense_Mutation p.P569T 0.32 tolerated(0.98) benign(0.102) TCGA-CN-5360-01 10 18242223 18242223 G T SLC39A12 Missense_Mutation p.K6N 0.24 tolerated_low_confidence(0.09) benign(0.027) TCGA-CN-5360-01 10 32141445 32141445 C A ARHGAP12 Missense_Mutation p.K390N 0.35 deleterious(0.02) possibly_damaging(0.821) TCGA-CN-5360-01 10 35299114 35299114 A T CUL2 3'Flank 0.29 TCGA-CN-5360-01 10 38406775 38406775 A G ZNF37A Silent p.P232P 0.18 TCGA-CN-5360-01 10 44873324 44873324 C A CXCL12 Missense_Mutation p.R99M 0.62 tolerated_low_confidence(0.17) benign(0.08) TCGA-CN-5360-01 10 45499500 45499500 C - ZNF22 3'UTR 0.32 TCGA-CN-5360-01 10 50954889 50954889 A C OGDHL Missense_Mutation p.F401L 0.21 deleterious(0.02) possibly_damaging(0.903) TCGA-CN-5360-01 10 61011119 61011119 A T FAM13C Intron 0.38 TCGA-CN-5360-01 10 95360467 95360467 C A RBP4 Missense_Mutation p.G69C 0.44 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 11 102646043 102646043 C T MMP10 Nonsense_Mutation p.W314* 0.06 TCGA-CN-5360-01 11 104869720 104869720 C T CASP5 Missense_Mutation p.A343T 0.33 tolerated(0.07) benign(0.141) TCGA-CN-5360-01 11 105967590 105967590 T C AASDHPPT Missense_Mutation p.C296R 0.17 tolerated(0.42) benign(0.004) TCGA-CN-5360-01 11 123847735 123847735 C T OR10S1 Missense_Mutation p.A222T 0.18 tolerated(0.3) benign(0.06) TCGA-CN-5360-01 11 123900787 123900787 T A OR10G8 Missense_Mutation p.L153Q 0.30 deleterious(0) probably_damaging(0.972) TCGA-CN-5360-01 11 124120564 124120564 C A OR8G1 Missense_Mutation p.L48M 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-5360-01 11 124617497 124617497 G A VSIG2 Silent p.F306F 0.08 TCGA-CN-5360-01 11 124761626 124761626 G C ROBO4 Missense_Mutation p.S540R 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-CN-5360-01 11 1255445 1255445 C A MUC5B Silent p.A796A 0.30 TCGA-CN-5360-01 11 1269681 1269681 A C MUC5B Silent p.P3857P 0.23 TCGA-CN-5360-01 11 22294481 22294481 A T ANO5 Silent p.I727I 0.22 TCGA-CN-5360-01 11 30033431 30033431 G T KCNA4 Silent p.A265A 0.26 TCGA-CN-5360-01 11 3381036 3381036 T C ZNF195 Missense_Mutation p.Q401R 0.25 tolerated(0.1) possibly_damaging(0.751) TCGA-CN-5360-01 11 40136727 40136727 C A LRRC4C Missense_Mutation p.E372D 0.29 tolerated(0.09) benign(0.018) TCGA-CN-5360-01 11 408879 408879 C T SIGIRR Missense_Mutation p.A8T 0.21 tolerated(0.18) benign(0.013) TCGA-CN-5360-01 11 44296974 44296974 T A ALX4 Missense_Mutation p.Q234L 0.28 deleterious(0) probably_damaging(0.973) TCGA-CN-5360-01 11 51411677 51411677 C A OR4A5 Missense_Mutation p.G240V 0.07 deleterious_low_confidence(0) benign(0.019) TCGA-CN-5360-01 11 5290723 5290723 C A HBE1 Silent p.L92L 0.18 TCGA-CN-5360-01 11 5291176 5291176 G T HBE1 5'UTR 0.12 TCGA-CN-5360-01 11 5411012 5411012 C T OR51M1 Silent p.L128L 0.21 TCGA-CN-5360-01 11 55579236 55579236 G T OR5L1 Missense_Mutation p.M98I 0.11 tolerated(0.53) benign(0.002) TCGA-CN-5360-01 11 55579237 55579237 G T OR5L1 Missense_Mutation p.V99L 0.11 tolerated(0.3) benign(0.011) TCGA-CN-5360-01 11 55587970 55587970 C A OR5D18 Missense_Mutation p.L289M 0.09 deleterious(0) possibly_damaging(0.559) TCGA-CN-5360-01 11 55594988 55594988 G T OR5L2 Missense_Mutation p.M98I 0.14 tolerated(0.6) benign(0.049) TCGA-CN-5360-01 11 55594989 55594989 G T OR5L2 Missense_Mutation p.V99L 0.14 tolerated(0.38) benign(0.008) TCGA-CN-5360-01 11 55735898 55735898 G A OR10AG1 Silent p.L14L 0.05 TCGA-CN-5360-01 11 56085893 56085893 C A OR8K3 Silent p.I37I 0.35 TCGA-CN-5360-01 11 56237592 56237592 G T OR5M3 Missense_Mutation p.L128M 0.24 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 11 56258070 56258070 G A OR5M8 Silent p.L259L 0.37 TCGA-CN-5360-01 11 56431893 56431893 C A OR5AR1 Missense_Mutation p.H244Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 11 56510975 56510975 T C OR9G4 Missense_Mutation p.K105E 0.04 deleterious(0) benign(0.033) TCGA-CN-5360-01 11 59245402 59245402 C A OR4D10 Missense_Mutation p.P167H 0.04 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 11 59622211 59622211 T C TCN1 Silent p.T345T 0.06 TCGA-CN-5360-01 11 6024019 6024019 G A OR56A4 Silent p.L120L 0.21 TCGA-CN-5360-01 11 6292776 6292776 A G CCKBR 3'UTR 0.12 TCGA-CN-5360-01 11 6789565 6789565 C A OR2AG2 Missense_Mutation p.L208F 0.23 deleterious(0.03) benign(0.031) TCGA-CN-5360-01 11 68830381 68830381 C A TPCN2 Silent p.P192P 0.25 TCGA-CN-5360-01 11 71950813 71950813 G T PHOX2A Missense_Mutation p.L279M 0.44 deleterious_low_confidence(0.02) unknown(0) TCGA-CN-5360-01 11 73753213 73753213 T A C2CD3 Missense_Mutation p.N1849I 0.41 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 11 8008811 8008811 T C EIF3F 5'UTR 0.24 TCGA-CN-5360-01 11 87013387 87013387 G A TMEM135 Missense_Mutation p.A201T 0.29 tolerated(0.5) benign(0.003) TCGA-CN-5360-01 11 99827584 99827584 G T CNTN5 Silent p.A240A 0.24 TCGA-CN-5360-01 12 100043179 100043179 C A FAM71C 3'UTR 0.22 TCGA-CN-5360-01 12 101012273 101012273 G C GAS2L3 Missense_Mutation p.E186Q 0.25 deleterious(0.01) benign(0.403) TCGA-CN-5360-01 12 104044339 104044339 G T STAB2 Nonsense_Mutation p.G414* 0.20 TCGA-CN-5360-01 12 104106206 104106206 G - STAB2 Frame_Shift_Del p.T1467Pfs*94 0.27 TCGA-CN-5360-01 12 106786921 106786921 C T POLR3B Missense_Mutation p.T279I 0.27 deleterious(0.01) possibly_damaging(0.497) TCGA-CN-5360-01 12 11139067 11139067 C T TAS2R50 Silent p.V131V 0.23 TCGA-CN-5360-01 12 112491432 112491432 A G NAA25 Missense_Mutation p.L553P 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-CN-5360-01 12 114793739 114793739 G T TBX5 Silent p.P385P 0.09 TCGA-CN-5360-01 12 125470763 125470763 G A DHX37 Missense_Mutation p.P52L 0.28 deleterious(0.01) benign(0) TCGA-CN-5360-01 12 131620641 131620641 G A GPR133 Missense_Mutation p.G776D 0.16 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 12 131621519 131621519 G T GPR133 Missense_Mutation p.G799V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5360-01 12 133198650 133198650 T C P2RX2 3'Flank 0.14 TCGA-CN-5360-01 12 133241050 133241050 T A POLE Splice_Site p.X823_splice 0.28 TCGA-CN-5360-01 12 13717318 13717318 G T GRIN2B Missense_Mutation p.P952T 0.29 tolerated(0.06) possibly_damaging(0.492) TCGA-CN-5360-01 12 15475702 15475702 C A PTPRO Silent p.L14L 0.31 TCGA-CN-5360-01 12 21721901 21721901 G C GYS2 Missense_Mutation p.R241G 0.17 deleterious(0.02) possibly_damaging(0.737) TCGA-CN-5360-01 12 22013989 22013989 C T ABCC9 Silent p.R780R 0.18 TCGA-CN-5360-01 12 22676469 22676469 C A C2CD5 Nonsense_Mutation p.E231* 0.24 TCGA-CN-5360-01 12 32480467 32480467 G T BICD1 Missense_Mutation p.A360S 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-CN-5360-01 12 4479648 4479648 C A FGF23 Missense_Mutation p.C206F 0.29 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-CN-5360-01 12 53647566 53647566 C T MFSD5 Missense_Mutation p.S423F 0.27 tolerated(0.73) benign(0.054) TCGA-CN-5360-01 12 55523823 55523823 C A OR9K2 Missense_Mutation p.L91I 0.20 deleterious(0) probably_damaging(0.986) TCGA-CN-5360-01 12 55820376 55820376 C T OR6C76 Silent p.A113A 0.24 TCGA-CN-5360-01 12 57572180 57572180 G A LRP1 Missense_Mutation p.G1467D 0.21 possibly_damaging(0.521) TCGA-CN-5360-01 12 58125675 58125675 G T AGAP2 Silent p.R624R 0.21 TCGA-CN-5360-01 12 58125676 58125676 G T AGAP2 Silent p.L623L 0.21 TCGA-CN-5360-01 12 70049538 70049538 C A BEST3 Missense_Mutation p.G386C 0.23 deleterious(0.04) possibly_damaging(0.592) TCGA-CN-5360-01 12 70932086 70932086 G C PTPRB Intron 0.42 TCGA-CN-5360-01 12 70953046 70953046 G T PTPRB Intron 0.21 TCGA-CN-5360-01 12 72866900 72866900 A T TRHDE Missense_Mutation p.E463D 0.22 deleterious(0) possibly_damaging(0.739) TCGA-CN-5360-01 12 72956721 72956721 T C TRHDE Missense_Mutation p.L603S 0.27 tolerated(0.98) benign(0.001) TCGA-CN-5360-01 12 78444555 78444555 C A NAV3 Missense_Mutation p.T715K 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 12 78444857 78444857 G C NAV3 Missense_Mutation p.D816H 0.17 deleterious(0.02) benign(0.224) TCGA-CN-5360-01 12 78511909 78511909 G T NAV3 Missense_Mutation p.G958C 0.20 deleterious(0) possibly_damaging(0.713) TCGA-CN-5360-01 12 78562633 78562633 C A NAV3 Missense_Mutation p.D1656E 0.19 tolerated(0.92) benign(0.008) TCGA-CN-5360-01 12 99020188 99020188 T C IKBIP Silent p.R218R 0.29 TCGA-CN-5360-01 13 109472729 109472729 C A MYO16 Missense_Mutation p.H282Q 0.17 tolerated(0.06) benign(0.044) TCGA-CN-5360-01 13 28866687 28866687 G T PAN3 3'Flank 0.29 TCGA-CN-5360-01 13 49033970 49033970 G T RB1 Splice_Site p.X702_splice 0.25 TCGA-CN-5360-01 13 77633756 77633756 G C MYCBP2 Missense_Mutation p.P4310A 0.29 probably_damaging(0.986) TCGA-CN-5360-01 13 92345593 92345593 G A GPC5 Missense_Mutation p.E160K 0.30 deleterious(0.01) possibly_damaging(0.898) TCGA-CN-5360-01 14 103188649 103188649 G A RCOR1 Missense_Mutation p.E439K 0.24 deleterious(0.05) probably_damaging(0.971) TCGA-CN-5360-01 14 103418843 103418843 G C CDC42BPB Missense_Mutation p.A1055G 0.09 deleterious(0) probably_damaging(0.983) TCGA-CN-5360-01 14 106054572 106054572 G T IGHA2 Missense_Mutation p.P54Q 0.18 deleterious(0) benign(0.171) TCGA-CN-5360-01 14 106092194 106092194 G C IGHG4 Silent p.T70T 0.17 TCGA-CN-5360-01 14 106236309 106236309 C A IGHG3 Nonsense_Mutation p.G166* 0.37 TCGA-CN-5360-01 14 106641586 106641586 T A IGHV1-18 Missense_Mutation p.T110S 0.22 tolerated(0.36) benign(0.321) TCGA-CN-5360-01 14 106641587 106641587 G T IGHV1-18 Missense_Mutation p.D109E 0.22 deleterious(0.02) possibly_damaging(0.731) TCGA-CN-5360-01 14 106780703 106780703 C G IGHV4-28 Missense_Mutation p.W54S 0.29 deleterious(0) probably_damaging(0.989) TCGA-CN-5360-01 14 107048842 107048842 G T IGHV3-53 Missense_Mutation p.P60T 0.10 deleterious_low_confidence(0) benign(0.316) TCGA-CN-5360-01 14 107131203 107131203 G T IGHV3-66 Missense_Mutation p.P60T 0.15 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-CN-5360-01 14 19378336 19378336 G A OR11H12 Missense_Mutation p.G248E 0.45 deleterious(0) probably_damaging(0.982) TCGA-CN-5360-01 14 20482615 20482616 - A OR4K14 Frame_Shift_Ins p.M246Ifs*20 0.23 TCGA-CN-5360-01 14 20818708 20818708 C A PARP2 Missense_Mutation p.N129K 0.16 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 14 21623117 21623117 C A OR5AU1 Missense_Mutation p.W356C 0.14 deleterious(0.02) benign(0.319) TCGA-CN-5360-01 14 21859702 21859702 C T CHD8 Missense_Mutation p.E2329K 0.24 deleterious(0) benign(0) TCGA-CN-5360-01 14 22356461 22356461 C - TRAV12-2 Frame_Shift_Del p.S41Lfs*27 0.29 TCGA-CN-5360-01 14 22466318 22466318 T A TRAV17 Missense_Mutation p.V83D 0.25 deleterious(0) possibly_damaging(0.587) TCGA-CN-5360-01 14 38061917 38061917 C G FOXA1 Splice_Site p.X25_splice 0.16 TCGA-CN-5360-01 14 38281594 38281594 G A TTC6 Missense_Mutation p.G1549R 0.19 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 14 39644596 39644596 G T PNN Missense_Mutation p.R38M 0.24 deleterious(0) probably_damaging(0.997) TCGA-CN-5360-01 14 42356187 42356187 G A LRFN5 Missense_Mutation p.S120N 0.20 deleterious(0.04) benign(0.173) TCGA-CN-5360-01 14 52433376 52433376 G T GNG2 Nonsense_Mutation p.E63* 0.24 TCGA-CN-5360-01 14 52520339 52520339 A G NID2 Missense_Mutation p.Y463H 0.24 tolerated(0.76) benign(0.002) TCGA-CN-5360-01 14 53518577 53518577 T C DDHD1 Missense_Mutation p.K836E 0.11 tolerated(0.27) benign(0.021) TCGA-CN-5360-01 14 58927843 58927843 G T KIAA0586 Missense_Mutation p.R728I 0.22 deleterious(0.01) benign(0.33) TCGA-CN-5360-01 14 59112685 59112685 G C DACT1 Missense_Mutation p.Q448H 0.27 tolerated(0.25) possibly_damaging(0.694) TCGA-CN-5360-01 14 70512658 70512658 T A SLC8A3 3'UTR 0.35 TCGA-CN-5360-01 14 72961932 72961932 G T RGS6 Missense_Mutation p.W309C 0.29 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 14 79175791 79175791 C A NRXN3 Missense_Mutation p.L112I 0.30 tolerated(0.1) probably_damaging(0.978) TCGA-CN-5360-01 15 100269708 100269708 T A LYSMD4 Nonsense_Mutation p.K172* 0.27 TCGA-CN-5360-01 15 20170184 20170184 C A IGHV1OR15-9 Missense_Mutation p.V30L 0.24 tolerated(0.76) benign(0.076) TCGA-CN-5360-01 15 20170185 20170185 C T IGHV1OR15-9 Silent p.E29E 0.24 TCGA-CN-5360-01 15 24921750 24921750 G C NPAP1 Missense_Mutation p.A246P 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5360-01 15 24922585 24922585 C G NPAP1 Missense_Mutation p.P524R 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-CN-5360-01 15 25324118 25324118 G T SNORD116-12 3'Flank 0.13 TCGA-CN-5360-01 15 26793136 26793136 C A GABRB3 Missense_Mutation p.R409L 0.26 deleterious(0.04) benign(0.392) TCGA-CN-5360-01 15 28388011 28388011 T A HERC2 Missense_Mutation p.R3836W 0.15 probably_damaging(0.972) TCGA-CN-5360-01 15 40580885 40580885 C A PLCB2 3'UTR 0.19 TCGA-CN-5360-01 15 43487069 43487069 C T CCNDBP1 3'UTR 0.24 TCGA-CN-5360-01 15 48714173 48714173 T A FBN1 Missense_Mutation p.T2516S 0.22 benign(0.21) TCGA-CN-5360-01 15 51221213 51221213 G T AP4E1 Missense_Mutation p.V184L 0.22 deleterious(0.01) benign(0.064) TCGA-CN-5360-01 15 55669217 55669217 T C CCPG1 Silent p.A128A 0.28 TCGA-CN-5360-01 15 58287338 58287338 C A ALDH1A2 Splice_Site p.X165_splice 0.25 TCGA-CN-5360-01 15 59182658 59182658 C T SLTM Missense_Mutation p.R634Q 0.20 deleterious(0.03) unknown(0) TCGA-CN-5360-01 15 64967929 64967929 C T ZNF609 Missense_Mutation p.S959L 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-CN-5360-01 15 67873100 67873100 C T MAP2K5 Silent p.S87S 0.22 TCGA-CN-5360-01 15 73659940 73659940 G A HCN4 Silent p.P224P 0.22 TCGA-CN-5360-01 15 78780136 78780136 G T IREB2 Missense_Mutation p.A591S 0.17 tolerated(0.73) benign(0.027) TCGA-CN-5360-01 15 87089303 87089303 C G AGBL1 Missense_Mutation p.T873S 0.19 tolerated(0.13) probably_damaging(0.958) TCGA-CN-5360-01 15 99456390 99456390 T A IGF1R Missense_Mutation p.H569Q 0.31 tolerated(0.47) benign(0) TCGA-CN-5360-01 15 99456391 99456391 G T IGF1R Missense_Mutation p.G570W 0.30 tolerated(0.12) possibly_damaging(0.657) TCGA-CN-5360-01 16 11650502 11650502 C A LITAF Missense_Mutation p.V29F 0.31 tolerated(0.12) benign(0.004) TCGA-CN-5360-01 16 17202526 17202526 C T XYLT1 3'UTR 0.26 TCGA-CN-5360-01 16 19557743 19557743 A C CCP110 Missense_Mutation p.E929D 0.29 deleterious(0.05) probably_damaging(0.971) TCGA-CN-5360-01 16 20410587 20410587 G T PDILT Silent p.A12A 0.13 TCGA-CN-5360-01 16 20570737 20570737 C A ACSM2B Missense_Mutation p.W70C 0.20 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 16 20824541 20824541 T C AC004381.6 Silent p.T56T 0.28 TCGA-CN-5360-01 16 21038393 21038393 G A DNAH3 Silent p.F1832F 0.20 TCGA-CN-5360-01 16 21117970 21117970 C T DNAH3 Missense_Mutation p.A709T 0.19 tolerated(0.1) benign(0.07) TCGA-CN-5360-01 16 24581745 24581745 A C RBBP6 Missense_Mutation p.E1245A 0.24 deleterious_low_confidence(0) unknown(0) TCGA-CN-5360-01 16 27556684 27556684 T C GTF3C1 Missense_Mutation p.R128G 0.28 deleterious(0) possibly_damaging(0.662) TCGA-CN-5360-01 16 3065333 3065333 C A CLDN6 3'UTR 0.26 TCGA-CN-5360-01 16 31072937 31072937 C A ZNF668 Missense_Mutation p.V461L 0.21 tolerated_low_confidence(0.35) benign(0.006) TCGA-CN-5360-01 16 3614575 3614575 G T NLRC3 Silent p.T168T 0.28 TCGA-CN-5360-01 16 54965210 54965210 G A IRX5 Missense_Mutation p.D34N 0.32 deleterious(0) possibly_damaging(0.815) TCGA-CN-5360-01 16 69726060 69726060 A G NFAT5 Missense_Mutation p.N778D 0.06 benign(0.118) TCGA-CN-5360-01 16 720765 720765 G C RHOT2 Missense_Mutation p.A211P 0.32 tolerated(0.2) possibly_damaging(0.452) TCGA-CN-5360-01 16 82131825 82131825 G A HSD17B2 Silent p.K316K 0.33 TCGA-CN-5360-01 17 10402013 10402013 C T MYH1 Missense_Mutation p.E1371K 0.32 deleterious(0) benign(0.047) TCGA-CN-5360-01 17 10427956 10427956 G A MYH2 Missense_Mutation p.R1668W 0.29 deleterious(0) probably_damaging(0.98) TCGA-CN-5360-01 17 10429159 10429159 C T MYH2 Missense_Mutation p.E1408K 0.31 deleterious(0.01) probably_damaging(0.967) TCGA-CN-5360-01 17 11833273 11833273 A T DNAH9 Missense_Mutation p.M3990L 0.31 benign(0.001) TCGA-CN-5360-01 17 11837194 11837194 C T DNAH9 Intron 0.31 TCGA-CN-5360-01 17 12649298 12649298 C T MYOCD Missense_Mutation p.P345L 0.33 deleterious(0.02) benign(0.263) TCGA-CN-5360-01 17 18566461 18566461 T A ZNF286B Missense_Mutation p.S120C 0.38 tolerated(0.06) possibly_damaging(0.711) TCGA-CN-5360-01 17 27041920 27041920 T A RAB34 Splice_Site p.X259_splice 0.19 TCGA-CN-5360-01 17 36871978 36871979 - G MLLT6 Frame_Shift_Ins p.K313Efs*42 0.30 TCGA-CN-5360-01 17 39022952 39022952 T A KRT12 Missense_Mutation p.T163S 0.20 deleterious(0.01) benign(0.114) TCGA-CN-5360-01 17 39881020 39881020 T C HAP1 Missense_Mutation p.K598R 0.23 deleterious(0) possibly_damaging(0.486) TCGA-CN-5360-01 17 41836134 41836134 C T SOST 5'UTR 0.25 TCGA-CN-5360-01 17 56344747 56344747 G A LPO Silent p.Q577Q 0.20 TCGA-CN-5360-01 17 56386506 56386506 C T BZRAP1 Missense_Mutation p.R1376K 0.28 tolerated(0.76) benign(0.051) TCGA-CN-5360-01 17 57270975 57270975 C A PRR11 Silent p.P175P 0.35 TCGA-CN-5360-01 17 60130054 60130054 C T MED13 Missense_Mutation p.G105E 0.19 deleterious(0) possibly_damaging(0.801) TCGA-CN-5360-01 17 61623183 61623183 C A KCNH6 Missense_Mutation p.H969N 0.22 tolerated_low_confidence(0.33) benign(0.001) TCGA-CN-5360-01 17 64225441 64225441 T A APOH Silent p.A19A 0.30 TCGA-CN-5360-01 17 6718618 6718618 G T TEKT1 Missense_Mutation p.R165S 0.31 deleterious(0) probably_damaging(0.993) TCGA-CN-5360-01 17 67516411 67516411 G T MAP2K6 Missense_Mutation p.G123C 0.33 deleterious(0) possibly_damaging(0.824) TCGA-CN-5360-01 17 7188426 7188426 C A SLC2A4 Missense_Mutation p.A347E 0.59 deleterious(0) probably_damaging(0.964) TCGA-CN-5360-01 17 74473293 74473293 G A RHBDF2 Missense_Mutation p.P326S 0.35 tolerated(0.32) benign(0.035) TCGA-CN-5360-01 17 7578474 7578475 CG A TP53 Frame_Shift_Del p.P152Lfs*18 0.19 TCGA-CN-5360-01 17 77709217 77709217 C A ENPP7 Missense_Mutation p.L259M 0.15 tolerated(0.11) probably_damaging(0.986) TCGA-CN-5360-01 17 80972342 80972342 C A B3GNTL1 Missense_Mutation p.Q132H 0.13 tolerated(0.08) benign(0.033) TCGA-CN-5360-01 17 8702310 8702310 C A MFSD6L Missense_Mutation p.L43F 0.30 deleterious(0) probably_damaging(0.996) TCGA-CN-5360-01 17 9792733 9792733 G T GLP2R Missense_Mutation p.R458L 0.29 tolerated(0.49) benign(0.004) TCGA-CN-5360-01 18 11888679 11888679 C T MPPE1 Nonsense_Mutation p.W186* 0.21 TCGA-CN-5360-01 18 29848468 29848468 G A GAREM Missense_Mutation p.P666L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 18 40857290 40857290 C A SYT4 5'UTR 0.18 TCGA-CN-5360-01 18 43329784 43329784 G A SLC14A1 Silent p.T402T 0.26 TCGA-CN-5360-01 18 54293689 54293689 C A TXNL1 Splice_Site p.X33_splice 0.25 TCGA-CN-5360-01 18 56985537 56985537 A G CPLX4 Missense_Mutation p.I53T 0.26 tolerated(0.07) benign(0.433) TCGA-CN-5360-01 18 5891898 5891898 G A TMEM200C Silent p.I55I 0.27 TCGA-CN-5360-01 18 61066522 61066522 C T VPS4B Silent p.L275L 0.29 TCGA-CN-5360-01 18 67860629 67860629 G A RTTN Missense_Mutation p.S301F 0.22 deleterious(0) probably_damaging(0.988) TCGA-CN-5360-01 18 7079977 7079977 T A LAMA1 Missense_Mutation p.R114S 0.21 deleterious(0.03) possibly_damaging(0.752) TCGA-CN-5360-01 18 73130849 73130849 C T SMIM21 Missense_Mutation p.R51H 0.26 tolerated_low_confidence(0.77) benign(0) TCGA-CN-5360-01 18 74962794 74962794 C A GALR1 Missense_Mutation p.A97E 0.17 deleterious(0) possibly_damaging(0.72) TCGA-CN-5360-01 19 10129427 10129427 C A RDH8 Missense_Mutation p.L115M 0.16 tolerated(0.15) benign(0.275) TCGA-CN-5360-01 19 10464800 10464800 C A TYK2 Silent p.S942S 0.20 TCGA-CN-5360-01 19 11942379 11942379 G T ZNF440 Nonsense_Mutation p.G130* 0.19 TCGA-CN-5360-01 19 11942380 11942380 G C ZNF440 Missense_Mutation p.G130A 0.20 tolerated(0.13) probably_damaging(0.999) TCGA-CN-5360-01 19 12542085 12542085 T A ZNF443 Nonsense_Mutation p.R301* 0.23 TCGA-CN-5360-01 19 15739139 15739139 G T CYP4F8 RNA 0.21 TCGA-CN-5360-01 19 17001363 17001363 C G F2RL3 Silent p.T363T 0.36 TCGA-CN-5360-01 19 17015051 17015051 G T CPAMD8 Silent p.G1459G 0.25 TCGA-CN-5360-01 19 17039836 17039836 G A CPAMD8 Silent p.P1067P 0.26 TCGA-CN-5360-01 19 17394535 17394535 G A ANKLE1 Nonsense_Mutation p.W321* 0.20 TCGA-CN-5360-01 19 17756536 17756536 G A UNC13A Missense_Mutation p.T768M 0.10 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 19 17949121 17949121 T A JAK3 Missense_Mutation p.Q507L 0.31 tolerated(0.08) benign(0.033) TCGA-CN-5360-01 19 18182953 18182953 C A IL12RB1 Missense_Mutation p.Q330H 0.15 deleterious(0.02) benign(0.223) TCGA-CN-5360-01 19 22155424 22155424 G T ZNF208 Silent p.P804P 0.24 TCGA-CN-5360-01 19 22363057 22363057 T C ZNF676 Missense_Mutation p.T488A 0.23 tolerated(0.45) benign(0.039) TCGA-CN-5360-01 19 22363257 22363257 T G ZNF676 Missense_Mutation p.Y421S 0.21 deleterious(0) probably_damaging(0.998) TCGA-CN-5360-01 19 3207205 3207205 G A NCLN Silent p.E503E 0.24 TCGA-CN-5360-01 19 32899172 32899172 C T DPY19L3 Missense_Mutation p.R5W 0.20 deleterious(0) probably_damaging(0.998) TCGA-CN-5360-01 19 35800774 35800774 C A MAG Intron 0.22 TCGA-CN-5360-01 19 36217232 36217232 G T KMT2B Missense_Mutation p.R1327S 0.21 benign(0.021) TCGA-CN-5360-01 19 37118348 37118348 G T ZNF382 Nonsense_Mutation p.E517* 0.27 TCGA-CN-5360-01 19 39798856 39798856 C A LRFN1 Missense_Mutation p.R578L 0.19 tolerated(0.07) benign(0.269) TCGA-CN-5360-01 19 39972552 39972552 T C TIMM50 Silent p.T149T 0.18 TCGA-CN-5360-01 19 40395857 40395857 C G FCGBP Missense_Mutation p.V2514L 0.18 benign(0.012) TCGA-CN-5360-01 19 42213713 42213713 A T CEA Missense_Mutation p.Q60L 0.26 tolerated(0.06) benign(0.36) TCGA-CN-5360-01 19 48543892 48543892 T C CABP5 Missense_Mutation p.I70V 0.17 tolerated(0.06) benign(0) TCGA-CN-5360-01 19 50063282 50063282 C A NOSIP Missense_Mutation p.G29W 0.25 deleterious(0.03) probably_damaging(0.97) TCGA-CN-5360-01 19 50666294 50666295 GC - IZUMO2 Frame_Shift_Del p.A53Rfs*46 0.32 TCGA-CN-5360-01 19 51919978 51919978 A G SIGLEC10 Silent p.H216H 0.23 TCGA-CN-5360-01 19 51986470 51986470 G A CEACAM18 Missense_Mutation p.M352I 0.26 tolerated(0.12) benign(0.192) TCGA-CN-5360-01 19 52869373 52869373 G T ZNF610 Missense_Mutation p.V248L 0.29 tolerated(0.28) benign(0.008) TCGA-CN-5360-01 19 53740380 53740380 G A ZNF677 Nonsense_Mutation p.Q534* 0.20 TCGA-CN-5360-01 19 54403966 54403966 G T PRKCG Missense_Mutation p.R513L 0.16 tolerated(0.07) benign(0.071) TCGA-CN-5360-01 19 54502939 54502939 C T CACNG6 Missense_Mutation p.A153V 0.26 tolerated(1) benign(0.023) TCGA-CN-5360-01 19 55677772 55677772 G T DNAAF3 Missense_Mutation p.P51T 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-5360-01 19 56042591 56042591 A G SBK2 Silent p.I125I 0.22 TCGA-CN-5360-01 19 57325540 57325540 C G PEG3 Missense_Mutation p.G1424R 0.25 tolerated(0.07) probably_damaging(0.984) TCGA-CN-5360-01 19 57641829 57641829 G T USP29 Nonsense_Mutation p.E596* 0.26 TCGA-CN-5360-01 19 57666725 57666725 G T DUXA Silent p.R152R 0.28 TCGA-CN-5360-01 19 57802666 57802666 G A ZNF460 Missense_Mutation p.V253M 0.26 deleterious(0.02) benign(0.145) TCGA-CN-5360-01 19 58862906 58862906 C T A1BG Missense_Mutation p.R254K 0.18 tolerated(1) benign(0.038) TCGA-CN-5360-01 19 6734313 6734313 T C GPR108 Missense_Mutation p.Q127R 0.24 tolerated(0.55) benign(0.002) TCGA-CN-5360-01 19 7120658 7120658 C A INSR Missense_Mutation p.G1211V 0.21 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 19 7529551 7529551 G A ARHGEF18 Missense_Mutation p.G772E 0.31 tolerated(0.13) benign(0.008) TCGA-CN-5360-01 19 8387676 8387676 C T RPS28 3'UTR 0.12 TCGA-CN-5360-01 19 9085606 9085606 G A MUC16 Missense_Mutation p.S2070F 0.29 unknown(0) TCGA-CN-5360-01 19 9088915 9088915 C T MUC16 Nonsense_Mutation p.W967* 0.20 TCGA-CN-5360-01 1 111435056 111435056 G T CD53 Silent p.T51T 0.26 TCGA-CN-5360-01 1 11918861 11918861 C A NPPB Silent p.A10A 0.38 TCGA-CN-5360-01 1 1263084 1263084 C A GLTPD1 Missense_Mutation p.R196S 0.23 tolerated(0.15) benign(0.009) TCGA-CN-5360-01 1 145115999 145115999 C T SEC22B RNA 0.07 TCGA-CN-5360-01 1 145296541 145296541 G C NBPF10 Missense_Mutation p.A155P 0.10 probably_damaging(0.972) TCGA-CN-5360-01 1 149783631 149783631 T A HIST2H2BF Missense_Mutation p.H83L 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.896) TCGA-CN-5360-01 1 150131289 150131289 C A PLEKHO1 Silent p.G267G 0.28 TCGA-CN-5360-01 1 150689696 150689696 C A HORMAD1 Missense_Mutation p.R32S 0.23 deleterious(0) probably_damaging(0.954) TCGA-CN-5360-01 1 150724474 150724474 C A CTSS Missense_Mutation p.G137V 0.24 deleterious(0) probably_damaging(0.993) TCGA-CN-5360-01 1 157557067 157557067 C A FCRL4 Missense_Mutation p.Q282H 0.23 tolerated(0.13) benign(0.049) TCGA-CN-5360-01 1 157739772 157739772 G A FCRL2 Missense_Mutation p.P160L 0.23 deleterious(0) probably_damaging(0.952) TCGA-CN-5360-01 1 157773822 157773822 C A FCRL1 Missense_Mutation p.Q44H 0.20 deleterious(0.02) benign(0.106) TCGA-CN-5360-01 1 158636152 158636152 C A SPTA1 Missense_Mutation p.R725L 0.19 tolerated(1) benign(0.003) TCGA-CN-5360-01 1 158815619 158815619 C A MNDA Nonsense_Mutation p.Y271* 0.17 TCGA-CN-5360-01 1 167096649 167096649 A G DUSP27 Missense_Mutation p.S761G 0.23 tolerated(0.5) benign(0.003) TCGA-CN-5360-01 1 169526028 169526028 G A F5 Missense_Mutation p.H270Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 1 170927641 170927641 C A MROH9 Missense_Mutation p.L38M 0.16 tolerated(0.08) possibly_damaging(0.662) TCGA-CN-5360-01 1 175348704 175348704 G A TNR Silent p.T649T 0.23 TCGA-CN-5360-01 1 176526124 176526124 G T PAPPA2 Missense_Mutation p.W222C 0.23 tolerated(0.1) possibly_damaging(0.533) TCGA-CN-5360-01 1 176927497 176927497 C T ASTN1 Missense_Mutation p.D574N 0.22 deleterious(0) probably_damaging(0.92) TCGA-CN-5360-01 1 179587802 179587802 A G TDRD5 Silent p.K300K 0.24 TCGA-CN-5360-01 1 181690998 181690998 C A CACNA1E Silent p.T687T 0.23 TCGA-CN-5360-01 1 181731752 181731752 G A CACNA1E Missense_Mutation p.V1550M 0.25 deleterious(0) possibly_damaging(0.867) TCGA-CN-5360-01 1 18692115 18692115 C G IGSF21 Missense_Mutation p.I313M 0.28 deleterious(0.04) possibly_damaging(0.694) TCGA-CN-5360-01 1 196871597 196871597 T C CFHR4 Silent p.Y35Y 0.29 TCGA-CN-5360-01 1 197101412 197101412 T G ASPM Intron 0.23 TCGA-CN-5360-01 1 197876404 197876404 C G C1orf53 3'UTR 0.35 TCGA-CN-5360-01 1 198701448 198701448 G T PTPRC Missense_Mutation p.S665I 0.20 deleterious(0) probably_damaging(0.973) TCGA-CN-5360-01 1 200017865 200017865 G T NR5A2 Silent p.G343G 0.24 TCGA-CN-5360-01 1 203054660 203054660 G C MYOG Missense_Mutation p.R144G 0.25 deleterious(0.02) probably_damaging(0.931) TCGA-CN-5360-01 1 208390886 208390886 C T PLXNA2 Missense_Mutation p.A128T 0.21 deleterious(0.04) probably_damaging(0.992) TCGA-CN-5360-01 1 216373030 216373030 C T USH2A Silent p.K1250K 0.19 TCGA-CN-5360-01 1 233802661 233802661 A G KCNK1 Missense_Mutation p.I226V 0.23 tolerated(0.05) possibly_damaging(0.605) TCGA-CN-5360-01 1 241094032 241094032 C A RGS7 Nonsense_Mutation p.E124* 0.24 TCGA-CN-5360-01 1 242159636 242159636 G A MAP1LC3C Silent p.N91N 0.23 TCGA-CN-5360-01 1 242511469 242511469 C A PLD5 Missense_Mutation p.V89L 0.21 tolerated(0.06) possibly_damaging(0.883) TCGA-CN-5360-01 1 243349671 243349671 T A CEP170 Missense_Mutation p.R388W 0.24 deleterious(0) probably_damaging(0.965) TCGA-CN-5360-01 1 245850938 245850938 C G KIF26B Missense_Mutation p.D1551E 0.30 tolerated(0.21) unknown(0) TCGA-CN-5360-01 1 247695329 247695329 G T OR2C3 Missense_Mutation p.T162K 0.13 deleterious(0.01) probably_damaging(0.979) TCGA-CN-5360-01 1 248308673 248308673 G T OR2M5 Missense_Mutation p.C75F 0.37 tolerated(0.07) benign(0.078) TCGA-CN-5360-01 1 28285042 28285042 G T SMPDL3B Missense_Mutation p.R354L 0.38 tolerated(0.31) benign(0.004) TCGA-CN-5360-01 1 36807298 36807298 C T STK40 3'UTR 0.24 TCGA-CN-5360-01 1 38397463 38397463 T G INPP5B Intron 0.44 TCGA-CN-5360-01 1 77333290 77333290 T C ST6GALNAC5 5'UTR 0.26 TCGA-CN-5360-01 1 9416393 9416393 G T SPSB1 Missense_Mutation p.R148L 0.35 tolerated(0.06) benign(0.001) TCGA-CN-5360-01 20 1286353 1286353 C A SNPH Silent p.T380T 0.19 TCGA-CN-5360-01 20 13868594 13868594 C A SEL1L2 Missense_Mutation p.M219I 0.12 deleterious(0) probably_damaging(0.989) TCGA-CN-5360-01 20 18377178 18377178 T A DZANK1 Missense_Mutation p.T517S 0.39 deleterious(0.02) possibly_damaging(0.883) TCGA-CN-5360-01 20 2097588 2097588 G T STK35 Missense_Mutation p.G390V 0.14 deleterious(0) benign(0.344) TCGA-CN-5360-01 20 23346248 23346248 G - GZF1 Frame_Shift_Del p.G410Afs*7 0.34 TCGA-CN-5360-01 20 25060074 25060074 G A VSX1 Silent p.H167H 0.29 TCGA-CN-5360-01 20 35154397 35154397 C A DLGAP4 Silent p.P913P 0.23 TCGA-CN-5360-01 20 43942234 43942234 C A RBPJL Missense_Mutation p.T249K 0.37 deleterious(0.03) probably_damaging(0.997) TCGA-CN-5360-01 21 10998291 10998291 C A TPTE RNA 0.11 TCGA-CN-5360-01 21 47549387 47549387 C A COL6A2 Intron 0.25 TCGA-CN-5360-01 22 16287591 16287591 C G POTEH Missense_Mutation p.G99R 0.16 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-CN-5360-01 22 16287846 16287846 C T POTEH Missense_Mutation p.V14M 0.30 tolerated_low_confidence(0.08) benign(0.353) TCGA-CN-5360-01 22 19839663 19839663 G A C22orf29 Missense_Mutation p.P41L 0.26 tolerated(0.1) benign(0.031) TCGA-CN-5360-01 22 26159210 26159210 G A MYO18B Missense_Mutation p.D18N 0.20 tolerated(0.06) benign(0.244) TCGA-CN-5360-01 22 30700639 30700639 G C TBC1D10A Missense_Mutation p.P71A 0.24 tolerated(0.54) benign(0) TCGA-CN-5360-01 22 37273817 37273817 G C NCF4 3'UTR 0.29 TCGA-CN-5360-01 22 39428457 39428457 T C APOBEC3D 3'UTR 0.24 TCGA-CN-5360-01 22 40283742 40283742 C T ENTHD1 Missense_Mutation p.R4K 0.25 tolerated(0.1) benign(0.02) TCGA-CN-5360-01 22 46656831 46656831 G T PKDREJ Missense_Mutation p.R797S 0.22 tolerated(0.77) benign(0.002) TCGA-CN-5360-01 22 50962505 50962505 C G SCO2 Silent p.R112R 0.19 TCGA-CN-5360-01 22 51009711 51009711 T G CPT1B Missense_Mutation p.K584T 0.19 deleterious(0.04) benign(0.091) TCGA-CN-5360-01 2 101098739 101098739 C A NMS Missense_Mutation p.P139T 0.13 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 2 102955393 102955393 C G IL1RL1 Missense_Mutation p.T53R 0.19 deleterious(0) probably_damaging(0.978) TCGA-CN-5360-01 2 105859167 105859167 C T GPR45 Silent p.S284S 0.24 TCGA-CN-5360-01 2 108476275 108476275 C A RGPD4 Missense_Mutation p.H578N 0.13 deleterious(0) benign(0.403) TCGA-CN-5360-01 2 113788710 113788710 A G IL36B Silent p.Y12Y 0.24 TCGA-CN-5360-01 2 11718542 11718542 G T GREB1 Nonsense_Mutation p.G253* 0.26 TCGA-CN-5360-01 2 125285021 125285021 G A CNTNAP5 Missense_Mutation p.S545N 0.23 tolerated(0.16) benign(0.271) TCGA-CN-5360-01 2 128408390 128408390 G A GPR17 Silent p.T55T 0.26 TCGA-CN-5360-01 2 135711427 135711427 G - CCNT2 Frame_Shift_Del p.Q469Sfs*16 0.12 TCGA-CN-5360-01 2 136499519 136499519 C G UBXN4 Missense_Mutation p.A7G 0.25 tolerated(0.08) benign(0) TCGA-CN-5360-01 2 141130602 141130602 C A LRP1B Silent p.G3581G 0.19 TCGA-CN-5360-01 2 141460116 141460116 C A LRP1B Missense_Mutation p.L2010F 0.20 benign(0) TCGA-CN-5360-01 2 1459848 1459848 G T TPO Missense_Mutation p.V205F 0.18 deleterious(0) probably_damaging(0.997) TCGA-CN-5360-01 2 149226486 149226486 G T MBD5 Missense_Mutation p.R325L 0.27 deleterious(0.03) benign(0.433) TCGA-CN-5360-01 2 155102362 155102362 G T GALNT13 Missense_Mutation p.D242Y 0.23 deleterious(0) possibly_damaging(0.725) TCGA-CN-5360-01 2 155158090 155158090 A T GALNT13 Missense_Mutation p.I382F 0.22 tolerated(0.22) benign(0.006) TCGA-CN-5360-01 2 161223858 161223858 G A RBMS1 Silent p.S40S 0.29 TCGA-CN-5360-01 2 166019249 166019249 C T SCN3A Missense_Mutation p.A262T 0.24 deleterious(0) probably_damaging(0.987) TCGA-CN-5360-01 2 166187857 166187857 C G SCN2A Missense_Mutation p.Q723E 0.20 deleterious(0.02) benign(0.024) TCGA-CN-5360-01 2 166606398 166606398 C T GALNT3 Missense_Mutation p.E545K 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5360-01 2 170136935 170136935 A G LRP2 Silent p.N422N 0.19 TCGA-CN-5360-01 2 175326175 175326175 G A GPR155 Silent p.H505H 0.24 TCGA-CN-5360-01 2 179437412 179437412 G T TTN Missense_Mutation p.L24483M 0.29 TCGA-CN-5360-01 2 179476296 179476296 T A TTN Missense_Mutation p.Y16887F 0.23 TCGA-CN-5360-01 2 179537416 179537416 G T TTN Missense_Mutation p.P11601T 0.19 TCGA-CN-5360-01 2 179588378 179588378 G T TTN Missense_Mutation p.P7150Q 0.28 TCGA-CN-5360-01 2 179603084 179603084 G A TTN Missense_Mutation p.A4699V 0.19 TCGA-CN-5360-01 2 179605479 179605479 A T TTN Missense_Mutation p.F4161I 0.24 TCGA-CN-5360-01 2 179611115 179611115 G T TTN Intron 0.18 TCGA-CN-5360-01 2 179611834 179611834 G T TTN Intron 0.21 TCGA-CN-5360-01 2 179635394 179635394 T C TTN Missense_Mutation p.I2709V 0.27 TCGA-CN-5360-01 2 180014079 180014079 C G SESTD1 Missense_Mutation p.E176Q 0.27 tolerated(0.12) possibly_damaging(0.637) TCGA-CN-5360-01 2 180634252 180634252 G C ZNF385B Missense_Mutation p.S77R 0.12 tolerated(0.21) benign(0.043) TCGA-CN-5360-01 2 182543323 182543323 T G NEUROD1 Missense_Mutation p.K89Q 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-CN-5360-01 2 183594599 183594599 A C DNAJC10 Silent p.R220R 0.21 TCGA-CN-5360-01 2 183594600 183594600 G T DNAJC10 Missense_Mutation p.R220I 0.21 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 2 189870076 189870076 G T COL3A1 Missense_Mutation p.G978C 0.17 probably_damaging(1) TCGA-CN-5360-01 2 190430079 190430079 C A SLC40A1 Splice_Site p.X254_splice 0.30 TCGA-CN-5360-01 2 197943433 197943433 C A ANKRD44 Silent p.L523L 0.33 TCGA-CN-5360-01 2 207989096 207989096 C G KLF7 Silent p.T45T 0.26 TCGA-CN-5360-01 2 210658494 210658494 G T UNC80 Missense_Mutation p.K283N 0.34 benign(0.035) TCGA-CN-5360-01 2 216251534 216251534 A C FN1 Missense_Mutation p.V1497G 0.22 deleterious(0) probably_damaging(0.954) TCGA-CN-5360-01 2 219127783 219127783 G T GPBAR1 Missense_Mutation p.M112I 0.32 tolerated(0.71) benign(0.002) TCGA-CN-5360-01 2 225400280 225400280 C T CUL3 Missense_Mutation p.A115T 0.25 deleterious(0.05) possibly_damaging(0.515) TCGA-CN-5360-01 2 228846371 228846371 C T SPHKAP 3'UTR 0.39 TCGA-CN-5360-01 2 228882377 228882377 G T SPHKAP Missense_Mutation p.P1065T 0.33 tolerated(0.12) benign(0.019) TCGA-CN-5360-01 2 238296331 238296331 G T COL6A3 Silent p.V402V 0.17 TCGA-CN-5360-01 2 27438549 27438549 A G ATRAID Missense_Mutation p.T194A 0.28 tolerated(0.22) benign(0.228) TCGA-CN-5360-01 2 27480193 27480193 C G SLC30A3 Silent p.G202G 0.33 TCGA-CN-5360-01 2 44079562 44079562 C T ABCG8 Missense_Mutation p.R211W 0.28 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 2 54753686 54753686 G T SPTBN1 Missense_Mutation p.R44L 0.25 deleterious(0) probably_damaging(0.998) TCGA-CN-5360-01 2 79971585 79971585 G T CTNNA2 Missense_Mutation p.V59L 0.24 deleterious(0.01) benign(0.182) TCGA-CN-5360-01 2 80831210 80831210 C A CTNNA2 Missense_Mutation p.P734Q 0.23 deleterious(0) probably_damaging(0.92) TCGA-CN-5360-01 2 89309748 89309748 G T IGKV1-9 Missense_Mutation p.Q28K 0.32 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-CN-5360-01 2 90154106 90154106 A C IGKV3D-15 Silent p.R65R 0.25 TCGA-CN-5360-01 2 90249396 90249396 C T IGKV1D-43 3'Flank 0.07 TCGA-CN-5360-01 2 95514982 95514982 T A RNU6-1320P 5'Flank 0.27 TCGA-CN-5360-01 2 98340653 98340653 C T ZAP70 Missense_Mutation p.H52Y 0.47 tolerated(0.79) benign(0.005) TCGA-CN-5360-01 2 98851213 98851213 C G VWA3B Missense_Mutation p.T804S 0.35 tolerated(0.49) benign(0.005) TCGA-CN-5360-01 3 108557809 108557809 C A TRAT1 Missense_Mutation p.H49Q 0.13 tolerated(0.19) benign(0.108) TCGA-CN-5360-01 3 10861414 10861414 C G SLC6A11 Missense_Mutation p.Q137E 0.29 tolerated(0.22) probably_damaging(0.991) TCGA-CN-5360-01 3 108822766 108822766 T A MORC1 Splice_Site p.X52_splice 0.25 TCGA-CN-5360-01 3 109050622 109050622 C T DPPA4 Missense_Mutation p.A117T 0.15 tolerated(0.36) benign(0.052) TCGA-CN-5360-01 3 111870716 111870716 A T SLC9C1 Missense_Mutation p.L1171Q 0.31 deleterious_low_confidence(0.01) benign(0.047) TCGA-CN-5360-01 3 112299779 112299779 A G SLC35A5 Missense_Mutation p.Y272C 0.20 deleterious(0.01) probably_damaging(1) TCGA-CN-5360-01 3 113375785 113375785 G A KIAA2018 Missense_Mutation p.P1582S 0.36 benign(0.043) TCGA-CN-5360-01 3 113955434 113955434 C A ZNF80 Missense_Mutation p.C163F 0.15 deleterious(0) probably_damaging(0.983) TCGA-CN-5360-01 3 119305452 119305452 G T ADPRH Missense_Mutation p.V207F 0.23 deleterious(0.01) benign(0.244) TCGA-CN-5360-01 3 120352006 120352006 G C HGD Silent p.A392A 0.19 TCGA-CN-5360-01 3 121413755 121413755 T G GOLGB1 Missense_Mutation p.E1872A 0.20 benign(0.055) TCGA-CN-5360-01 3 122247277 122247277 T C PARP9 Silent p.S833S 0.20 TCGA-CN-5360-01 3 124802771 124802771 G T SLC12A8 Missense_Mutation p.S703Y 0.08 deleterious(0) probably_damaging(0.91) TCGA-CN-5360-01 3 126255138 126255138 C A CHST13 Missense_Mutation p.S41Y 0.15 deleterious(0) possibly_damaging(0.618) TCGA-CN-5360-01 3 134825427 134825427 C A EPHB1 Missense_Mutation p.P315T 0.23 deleterious(0.02) benign(0.097) TCGA-CN-5360-01 3 138289944 138289944 C - CEP70 Frame_Shift_Del p.L72Ffs*12 0.11 TCGA-CN-5360-01 3 140281733 140281733 C A CLSTN2 Silent p.R765R 0.12 TCGA-CN-5360-01 3 142522827 142522827 G T TRPC1 Missense_Mutation p.G589V 0.17 tolerated(0.08) possibly_damaging(0.486) TCGA-CN-5360-01 3 145799596 145799596 C A PLOD2 Missense_Mutation p.W429C 0.12 deleterious(0) probably_damaging(0.994) TCGA-CN-5360-01 3 146307593 146307593 G - PLSCR5 Frame_Shift_Del p.I209Lfs*18 0.13 TCGA-CN-5360-01 3 147114163 147114163 G T ZIC4 Missense_Mutation p.P105H 0.18 tolerated(0.13) benign(0.002) TCGA-CN-5360-01 3 147130344 147130344 G C ZIC1 Missense_Mutation p.R341P 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 3 147131168 147131168 C T ZIC1 Nonsense_Mutation p.Q392* 0.12 TCGA-CN-5360-01 3 147131266 147131266 C A ZIC1 Silent p.P424P 0.13 TCGA-CN-5360-01 3 14755664 14755664 C A C3orf20 Silent p.T437T 0.31 TCGA-CN-5360-01 3 150128674 150128674 G T TSC22D2 Missense_Mutation p.V513L 0.12 deleterious(0.03) benign(0.003) TCGA-CN-5360-01 3 151067863 151067863 A T MED12L Missense_Mutation p.H721L 0.14 deleterious(0) probably_damaging(0.992) TCGA-CN-5360-01 3 15300345 15300345 G A SH3BP5 Silent p.A294A 0.32 TCGA-CN-5360-01 3 154861232 154861232 G T MME Missense_Mutation p.A397S 0.11 deleterious(0.02) probably_damaging(0.939) TCGA-CN-5360-01 3 159711264 159711264 G A IL12A Silent p.E135E 0.09 TCGA-CN-5360-01 3 160037641 160037641 A G IFT80 Silent p.C288C 0.24 TCGA-CN-5360-01 3 164786974 164786974 C A SI Missense_Mutation p.A89S 0.15 tolerated(0.44) benign(0.004) TCGA-CN-5360-01 3 164906635 164906635 C A SLITRK3 Missense_Mutation p.V662F 0.22 deleterious(0) possibly_damaging(0.64) TCGA-CN-5360-01 3 167272580 167272580 C T WDR49 Missense_Mutation p.D220N 0.19 deleterious(0) benign(0.348) TCGA-CN-5360-01 3 167322199 167322199 C A WDR49 5'UTR 0.13 TCGA-CN-5360-01 3 169639112 169639112 G A SAMD7 Missense_Mutation p.S66N 0.15 tolerated(1) benign(0) TCGA-CN-5360-01 3 169664002 169664002 C T RP11-379K17.4 RNA 0.19 TCGA-CN-5360-01 3 172046816 172046816 G T FNDC3B Silent p.P443P 0.15 TCGA-CN-5360-01 3 178948139 178948139 T C PIK3CA Missense_Mutation p.C971R 0.15 tolerated(0.18) benign(0.167) TCGA-CN-5360-01 3 180319919 180319919 G A TTC14 5'UTR 0.29 TCGA-CN-5360-01 3 180321002 180321002 G T TTC14 Missense_Mutation p.G126V 0.15 deleterious(0) probably_damaging(0.996) TCGA-CN-5360-01 3 182987805 182987805 C T B3GNT5 Silent p.Y73Y 0.19 TCGA-CN-5360-01 3 183824076 183824076 C A HTR3E Silent p.P388P 0.16 TCGA-CN-5360-01 3 186272075 186272075 C A TBCCD1 Missense_Mutation p.W504C 0.15 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 3 194149640 194149640 T G ATP13A3 Missense_Mutation p.S961R 0.19 tolerated(0.08) benign(0.077) TCGA-CN-5360-01 3 194336360 194336360 T A TMEM44 Nonsense_Mutation p.R331* 0.21 TCGA-CN-5360-01 3 196129879 196129879 C T UBXN7 Missense_Mutation p.R78H 0.13 deleterious(0) possibly_damaging(0.873) TCGA-CN-5360-01 3 197665493 197665493 C T IQCG Silent p.Q147Q 0.15 TCGA-CN-5360-01 3 21478684 21478684 C A ZNF385D Missense_Mutation p.G151W 0.39 deleterious(0.01) benign(0.282) TCGA-CN-5360-01 3 27216146 27216146 T C NEK10 Missense_Mutation p.E895G 0.28 deleterious(0.05) benign(0.35) TCGA-CN-5360-01 3 27233635 27233635 G C NEK10 Missense_Mutation p.S797C 0.29 deleterious(0.05) benign(0.07) TCGA-CN-5360-01 3 38921582 38921582 G T SCN11A Silent p.P1084P 0.27 TCGA-CN-5360-01 3 42132991 42132991 C G TRAK1 Silent p.P10P 0.16 TCGA-CN-5360-01 3 51263131 51263131 G T DOCK3 Missense_Mutation p.R435I 0.37 deleterious(0) probably_damaging(0.993) TCGA-CN-5360-01 3 52734476 52734476 T A GLT8D1 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-CN-5360-01 3 52977588 52977588 C A SFMBT1 Nonsense_Mutation p.G49* 0.27 TCGA-CN-5360-01 3 57496556 57496556 C T DNAH12 Missense_Mutation p.V144M 0.23 deleterious(0) probably_damaging(0.997) TCGA-CN-5360-01 3 75679932 75679932 G A MIR1324 RNA 0.06 TCGA-CN-5360-01 3 8809254 8809254 G A OXTR Missense_Mutation p.A207V 0.38 tolerated(0.16) benign(0.039) TCGA-CN-5360-01 3 97868307 97868307 C A OR5H14 Silent p.P26P 0.39 TCGA-CN-5360-01 3 97887742 97887742 G C OR5H15 Missense_Mutation p.A67P 0.18 deleterious(0) probably_damaging(0.912) TCGA-CN-5360-01 3 99509677 99509677 T C COL8A1 Missense_Mutation p.Y51H 0.19 tolerated_low_confidence(0.24) unknown(0) TCGA-CN-5360-01 4 104062227 104062227 A G CENPE Missense_Mutation p.I1833T 0.19 benign(0.017) TCGA-CN-5360-01 4 111397696 111397696 G A ENPEP Silent p.S42S 0.05 TCGA-CN-5360-01 4 121828688 121828688 C A PRDM5 Nonsense_Mutation p.G40* 0.27 TCGA-CN-5360-01 4 122854037 122854037 G T TRPC3 Missense_Mutation p.P126T 0.09 deleterious(0) probably_damaging(0.996) TCGA-CN-5360-01 4 155226280 155226280 G T DCHS2 Missense_Mutation p.D1333E 0.15 deleterious(0) probably_damaging(0.99) TCGA-CN-5360-01 4 166910618 166910618 C A TLL1 Silent p.P85P 0.26 TCGA-CN-5360-01 4 173269706 173269706 C A GALNTL6 Missense_Mutation p.P140Q 0.27 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 4 177604937 177604937 T C VEGFC 3'UTR 0.14 TCGA-CN-5360-01 4 186295607 186295607 C T LRP2BP Silent p.G113G 0.28 TCGA-CN-5360-01 4 2306180 2306180 G T ZFYVE28 Silent p.P629P 0.33 TCGA-CN-5360-01 4 44626780 44626780 C G YIPF7 Missense_Mutation p.G173A 0.50 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 4 47877297 47877297 C T NFXL1 Missense_Mutation p.C698Y 0.13 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 4 52917908 52917908 C G SPATA18 Missense_Mutation p.T13S 0.14 tolerated(1) benign(0.001) TCGA-CN-5360-01 4 55968085 55968085 C T KDR Missense_Mutation p.E749K 0.49 tolerated(0.17) possibly_damaging(0.507) TCGA-CN-5360-01 4 59410 59410 G T ZNF595 Missense_Mutation p.D31Y 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-5360-01 4 71275727 71275727 C T PROL1 Nonsense_Mutation p.Q228* 0.25 TCGA-CN-5360-01 4 73968234 73968234 C T ANKRD17 Missense_Mutation p.A1478T 0.21 benign(0.064) TCGA-CN-5360-01 4 77053715 77053715 G T NUP54 Missense_Mutation p.P290T 0.04 tolerated(0.05) benign(0.416) TCGA-CN-5360-01 4 78087166 78087166 A T CCNG2 3'UTR 0.26 TCGA-CN-5360-01 4 79500196 79500196 T C ANXA3 Missense_Mutation p.M40T 0.35 tolerated(0.31) benign(0) TCGA-CN-5360-01 4 85600085 85600085 G A WDFY3 Silent p.S3378S 0.31 TCGA-CN-5360-01 4 88583240 88583240 G A DMP1 Missense_Mutation p.D104N 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5360-01 4 91701637 91701637 G C CCSER1 Intron 0.33 TCGA-CN-5360-01 4 96761292 96761292 C A PDHA2 5'UTR 0.32 TCGA-CN-5360-01 5 102286460 102286460 G T PAM Missense_Mutation p.G281C 0.33 deleterious(0.01) benign(0.032) TCGA-CN-5360-01 5 102474116 102474116 G A PPIP5K2 Missense_Mutation p.E144K 0.24 deleterious(0.02) benign(0.292) TCGA-CN-5360-01 5 112384928 112384928 C A MCC Missense_Mutation p.K839N 0.33 deleterious(0.02) possibly_damaging(0.544) TCGA-CN-5360-01 5 127510346 127510348 ATT - SLC12A2 In_Frame_Del p.I973del 0.30 TCGA-CN-5360-01 5 13692194 13692194 G T DNAH5 Silent p.R4592R 0.14 TCGA-CN-5360-01 5 13876810 13876810 T A DNAH5 Missense_Mutation p.I1127F 0.17 benign(0.227) TCGA-CN-5360-01 5 140176058 140176058 G T PCDHA2 Silent p.A503A 0.35 TCGA-CN-5360-01 5 140181115 140181115 C A PCDHA3 Missense_Mutation p.D111E 0.31 tolerated_low_confidence(0.26) benign(0.034) TCGA-CN-5360-01 5 140215406 140215406 G T PCDHA7 Missense_Mutation p.G480W 0.38 tolerated_low_confidence(0.14) benign(0.001) TCGA-CN-5360-01 5 140229949 140229949 C T PCDHA9 Silent p.R623R 0.26 TCGA-CN-5360-01 5 140236300 140236300 G T PCDHA10 Nonsense_Mutation p.G223* 0.35 TCGA-CN-5360-01 5 140250827 140250827 G T PCDHA11 Silent p.T713T 0.28 TCGA-CN-5360-01 5 140553967 140553967 G T PCDHB7 Missense_Mutation p.R517S 0.32 deleterious_low_confidence(0.01) benign(0.366) TCGA-CN-5360-01 5 140573129 140573129 T A PCDHB10 Missense_Mutation p.V335E 0.33 deleterious_low_confidence(0) possibly_damaging(0.712) TCGA-CN-5360-01 5 150712872 150712872 G A SLC36A2 Silent p.D252D 0.31 TCGA-CN-5360-01 5 169535593 169535593 C A FOXI1 Missense_Mutation p.P372H 0.23 tolerated(0.1) possibly_damaging(0.73) TCGA-CN-5360-01 5 170720913 170720913 T A RANBP17 Silent p.I990I 0.31 TCGA-CN-5360-01 5 176309035 176309035 C T HK3 Missense_Mutation p.G716D 0.28 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 5 176637631 176637631 C G NSD1 Nonsense_Mutation p.S744* 0.30 TCGA-CN-5360-01 5 23524604 23524604 G T PRDM9 Missense_Mutation p.S371I 0.22 deleterious(0.01) benign(0.164) TCGA-CN-5360-01 5 32090710 32090710 G A PDZD2 Missense_Mutation p.G2386S 0.21 tolerated(1) benign(0.038) TCGA-CN-5360-01 5 33534996 33534996 G C ADAMTS12 Missense_Mutation p.H1516Q 0.24 deleterious(0.01) benign(0.245) TCGA-CN-5360-01 5 33577237 33577237 C G ADAMTS12 Missense_Mutation p.R965P 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-CN-5360-01 5 33936786 33936786 G T RXFP3 5'UTR 0.36 TCGA-CN-5360-01 5 35876247 35876247 C T IL7R Missense_Mutation p.P347S 0.24 tolerated(0.22) benign(0.039) TCGA-CN-5360-01 5 35988630 35988630 C A UGT3A1 Missense_Mutation p.D40Y 0.17 deleterious(0) benign(0.398) TCGA-CN-5360-01 5 3600253 3600253 C T IRX1 Silent p.P397P 0.20 TCGA-CN-5360-01 5 39308356 39308356 C T C9 Missense_Mutation p.V406I 0.21 tolerated(0.2) benign(0.004) TCGA-CN-5360-01 5 40979897 40979897 C T C7 Missense_Mutation p.H746Y 0.21 tolerated(0.24) benign(0.04) TCGA-CN-5360-01 5 41000408 41000408 G A MROH2B Nonsense_Mutation p.Q1466* 0.19 TCGA-CN-5360-01 5 74017519 74017519 A G GFM2 Silent p.D767D 0.26 TCGA-CN-5360-01 5 75906917 75906917 T C IQGAP2 Missense_Mutation p.L477P 0.32 tolerated(0.09) benign(0.309) TCGA-CN-5360-01 5 7709444 7709444 G T ADCY2 Missense_Mutation p.A508S 0.16 tolerated(0.05) possibly_damaging(0.734) TCGA-CN-5360-01 5 7826861 7826861 G T ADCY2 Missense_Mutation p.Q1051H 0.17 deleterious(0.02) benign(0.149) TCGA-CN-5360-01 5 89933675 89933675 T C GPR98 Missense_Mutation p.L717S 0.35 possibly_damaging(0.86) TCGA-CN-5360-01 6 108985860 108985860 C T FOXO3 Silent p.P608P 0.16 TCGA-CN-5360-01 6 117215197 117215197 A T RFX6 Missense_Mutation p.H205L 0.21 deleterious(0.01) benign(0.236) TCGA-CN-5360-01 6 127471641 127471641 A G RSPO3 Silent p.L120L 0.13 TCGA-CN-5360-01 6 127796902 127796902 C T SOGA3 Missense_Mutation p.A757T 0.22 tolerated(0.14) benign(0.126) TCGA-CN-5360-01 6 128134032 128134032 G A THEMIS Missense_Mutation p.P585L 0.23 deleterious(0.02) benign(0.062) TCGA-CN-5360-01 6 129371138 129371138 C A LAMA2 Missense_Mutation p.P63H 0.25 deleterious(0) probably_damaging(0.964) TCGA-CN-5360-01 6 130381238 130381238 G T L3MBTL3 Missense_Mutation p.V273L 0.23 tolerated(0.59) benign(0.426) TCGA-CN-5360-01 6 130392248 130392248 A G L3MBTL3 Missense_Mutation p.N407S 0.22 deleterious(0.04) probably_damaging(0.986) TCGA-CN-5360-01 6 130535556 130535556 C G SAMD3 Missense_Mutation p.Q65H 0.24 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-CN-5360-01 6 132030623 132030623 G T CTAGE9 Missense_Mutation p.T512K 0.23 tolerated(0.26) possibly_damaging(0.543) TCGA-CN-5360-01 6 132271472 132271472 G A CTGF Silent p.D167D 0.23 TCGA-CN-5360-01 6 132966320 132966320 G T TAAR1 Missense_Mutation p.P275T 0.19 deleterious(0) probably_damaging(0.994) TCGA-CN-5360-01 6 147655334 147655334 G A STXBP5 Missense_Mutation p.D708N 0.25 deleterious(0.04) benign(0.322) TCGA-CN-5360-01 6 150343328 150343328 C T RAET1L Missense_Mutation p.G46E 0.29 tolerated(0.1) possibly_damaging(0.872) TCGA-CN-5360-01 6 152708424 152708424 T A SYNE1 Missense_Mutation p.E2757V 0.22 benign(0.371) TCGA-CN-5360-01 6 155450864 155450864 G T TIAM2 Silent p.L169L 0.21 TCGA-CN-5360-01 6 158914657 158914658 CT - TULP4 Frame_Shift_Del p.S563Pfs*25 0.30 TCGA-CN-5360-01 6 159660563 159660563 C A FNDC1 Missense_Mutation p.P1399T 0.20 deleterious(0) unknown(0) TCGA-CN-5360-01 6 169064781 169064781 C T SMOC2 Missense_Mutation p.S449F 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.694) TCGA-CN-5360-01 6 17539517 17539517 A G CAP2 Silent p.T218T 0.23 TCGA-CN-5360-01 6 21596066 21596066 T G SOX4 Missense_Mutation p.F434C 0.28 deleterious(0) unknown(0) TCGA-CN-5360-01 6 24873954 24873954 C A FAM65B Missense_Mutation p.G59C 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-CN-5360-01 6 25665232 25665232 C A SCGN Missense_Mutation p.P103Q 0.20 tolerated(0.06) benign(0.244) TCGA-CN-5360-01 6 27115070 27115070 G A HIST1H2AH Missense_Mutation p.V55M 0.30 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-CN-5360-01 6 28539885 28539886 - A SCAND3 Frame_Shift_Ins p.A1261Cfs*2 0.16 TCGA-CN-5360-01 6 29012793 29012793 G T OR2W1 Missense_Mutation p.Q54K 0.24 tolerated(0.64) benign(0) TCGA-CN-5360-01 6 29943054 29943054 C T HCG9 RNA 0.25 TCGA-CN-5360-01 6 30035206 30035206 G A PPP1R11 Missense_Mutation p.G7R 0.20 tolerated(0.22) benign(0.347) TCGA-CN-5360-01 6 30309588 30309588 C T TRIM39 Missense_Mutation p.P370L 0.25 tolerated(0.61) probably_damaging(0.999) TCGA-CN-5360-01 6 31911569 31911569 G T CFB Missense_Mutation p.K419N 0.23 tolerated(0.15) benign(0.151) TCGA-CN-5360-01 6 38754683 38754683 G A DNAH8 Silent p.L629L 0.19 TCGA-CN-5360-01 6 39353414 39353414 T C KIF6 Missense_Mutation p.I615M 0.17 tolerated(0.55) benign(0.002) TCGA-CN-5360-01 6 40359670 40359670 G T LRFN2 3'UTR 0.17 TCGA-CN-5360-01 6 42613293 42613293 G A UBR2 Missense_Mutation p.A792T 0.26 deleterious(0) possibly_damaging(0.596) TCGA-CN-5360-01 6 47846286 47846286 G T PTCHD4 Missense_Mutation p.S765Y 0.22 deleterious(0) possibly_damaging(0.483) TCGA-CN-5360-01 6 49754394 49754394 T C PGK2 Silent p.A169A 0.26 TCGA-CN-5360-01 6 51483867 51483867 C A PKHD1 3'UTR 0.23 TCGA-CN-5360-01 6 51927386 51927386 T A PKHD1 Missense_Mutation p.Y350F 0.29 deleterious(0) probably_damaging(0.998) TCGA-CN-5360-01 6 56471280 56471280 C A DST Intron 0.16 TCGA-CN-5360-01 6 57012801 57012801 C T ZNF451 Missense_Mutation p.H640Y 0.25 deleterious(0.04) possibly_damaging(0.514) TCGA-CN-5360-01 6 57512786 57512786 G T PRIM2 3'UTR 0.17 TCGA-CN-5360-01 6 69653751 69653751 T C BAI3 Missense_Mutation p.W354R 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-CN-5360-01 6 69703837 69703837 G T BAI3 Missense_Mutation p.A638S 0.25 tolerated(1) benign(0.032) TCGA-CN-5360-01 6 76624544 76624544 G T MYO6 Nonsense_Mutation p.E1225* 0.15 TCGA-CN-5360-01 6 76715168 76715168 G T IMPG1 Missense_Mutation p.S324Y 0.19 deleterious(0) probably_damaging(0.983) TCGA-CN-5360-01 6 87725859 87725859 C A HTR1E Missense_Mutation p.D269E 0.23 tolerated(1) benign(0.002) TCGA-CN-5360-01 6 89888653 89888653 G T GABRR1 Missense_Mutation p.Q426K 0.16 tolerated(0.81) benign(0.411) TCGA-CN-5360-01 6 90331591 90331591 C T ANKRD6 Intron 0.19 TCGA-CN-5360-01 6 90383950 90383950 G A MDN1 Missense_Mutation p.R4374W 0.22 probably_damaging(0.99) TCGA-CN-5360-01 6 90402372 90402372 C A MDN1 Missense_Mutation p.L3459F 0.20 probably_damaging(0.993) TCGA-CN-5360-01 6 90402456 90402456 C T MDN1 Silent p.R3431R 0.25 TCGA-CN-5360-01 7 100675651 100675651 G T MUC17 Silent p.T318T 0.17 TCGA-CN-5360-01 7 101892287 101892287 G A CUX1 Missense_Mutation p.A1506T 0.30 deleterious(0) probably_damaging(0.949) TCGA-CN-5360-01 7 105190713 105190713 A G RINT1 Silent p.E371E 0.46 TCGA-CN-5360-01 7 105909600 105909600 C A NAMPT Missense_Mutation p.E202D 0.44 deleterious(0) possibly_damaging(0.785) TCGA-CN-5360-01 7 106822945 106822945 A G HBP1 Silent p.P99P 0.41 TCGA-CN-5360-01 7 11416278 11416278 C G THSD7A Missense_Mutation p.R1603T 0.33 deleterious(0.03) benign(0.075) TCGA-CN-5360-01 7 116955239 116955239 A T WNT2 Missense_Mutation p.S158R 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-CN-5360-01 7 123104887 123104887 C A IQUB Missense_Mutation p.K586N 0.17 deleterious(0) probably_damaging(0.992) TCGA-CN-5360-01 7 123152340 123152340 C A IQUB Nonsense_Mutation p.E19* 0.14 TCGA-CN-5360-01 7 123296010 123296010 C T LMOD2 5'UTR 0.31 TCGA-CN-5360-01 7 123296011 123296011 A C LMOD2 5'UTR 0.31 TCGA-CN-5360-01 7 124499083 124499083 G A POT1 Silent p.I210I 0.50 TCGA-CN-5360-01 7 130418350 130418350 G C KLF14 Missense_Mutation p.L171V 0.29 tolerated(1) benign(0.034) TCGA-CN-5360-01 7 132193309 132193309 G T PLXNA4 Silent p.A48A 0.16 TCGA-CN-5360-01 7 138261116 138261116 A T TRIM24 Splice_Site p.X672_splice 0.16 TCGA-CN-5360-01 7 138603874 138603874 C A KIAA1549 Missense_Mutation p.W166C 0.47 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 7 141754672 141754672 G T MGAM Missense_Mutation p.G1093V 0.39 deleterious(0) possibly_damaging(0.757) TCGA-CN-5360-01 7 141796147 141796147 G A MGAM Missense_Mutation p.V1646M 0.51 tolerated(0.09) benign(0.078) TCGA-CN-5360-01 7 142636723 142636723 C T C7orf34 Missense_Mutation p.P27L 0.20 deleterious_low_confidence(0.04) benign(0.016) TCGA-CN-5360-01 7 149420905 149420905 A T KRBA1 Missense_Mutation p.R285W 0.13 deleterious(0) probably_damaging(0.974) TCGA-CN-5360-01 7 149462101 149462101 C T ZNF467 Missense_Mutation p.S497N 0.28 tolerated(0.21) possibly_damaging(0.907) TCGA-CN-5360-01 7 150696317 150696317 C A NOS3 Silent p.A332A 0.52 TCGA-CN-5360-01 7 151879345 151879345 C G KMT2C Missense_Mutation p.S1867T 0.12 benign(0.004) TCGA-CN-5360-01 7 15430298 15430298 G C AGMO Missense_Mutation p.Q274E 0.17 deleterious(0.04) possibly_damaging(0.589) TCGA-CN-5360-01 7 15430330 15430330 T C AGMO Missense_Mutation p.H263R 0.18 deleterious(0.01) possibly_damaging(0.905) TCGA-CN-5360-01 7 154681206 154681206 A G DPP6 Missense_Mutation p.Q806R 0.35 tolerated(0.62) possibly_damaging(0.554) TCGA-CN-5360-01 7 20762764 20762764 C T ABCB5 Silent p.A849A 0.26 TCGA-CN-5360-01 7 29539573 29539573 G T CHN2 Missense_Mutation p.C277F 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-CN-5360-01 7 31378419 31378419 C T NEUROD6 Missense_Mutation p.R155K 0.18 tolerated(0.11) possibly_damaging(0.694) TCGA-CN-5360-01 7 42966149 42966149 C A PSMA2 Missense_Mutation p.M79I 0.27 tolerated(0.14) possibly_damaging(0.824) TCGA-CN-5360-01 7 44736099 44736100 AC - OGDH Frame_Shift_Del p.I617Rfs*5 0.31 TCGA-CN-5360-01 7 45004594 45004594 G A MYO1G Missense_Mutation p.R826C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 7 48141563 48141563 C T UPP1 Missense_Mutation p.P102L 0.30 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 7 6838029 6838029 A G RSPH10B2 Missense_Mutation p.K823R 0.12 tolerated(0.16) benign(0.023) TCGA-CN-5360-01 7 70881051 70881051 T C WBSCR17 Splice_Site p.X255_splice 0.09 TCGA-CN-5360-01 7 82579581 82579581 C A PCLO Silent p.V3441V 0.43 TCGA-CN-5360-01 7 88963725 88963725 C A ZNF804B Missense_Mutation p.P477T 0.55 deleterious(0) probably_damaging(1) TCGA-CN-5360-01 7 91730192 91730192 G C AKAP9 Missense_Mutation p.G3640A 0.46 benign(0.031) TCGA-CN-5360-01 7 94049949 94049949 G T COL1A2 Missense_Mutation p.A762S 0.33 unknown(0) TCGA-CN-5360-01 7 94931576 94931576 A T PON1 Missense_Mutation p.C284S 0.50 deleterious(0.01) possibly_damaging(0.521) TCGA-CN-5360-01 7 96650323 96650323 C A DLX5 Missense_Mutation p.G199W 0.15 deleterious(0) probably_damaging(0.998) TCGA-CN-5360-01 7 96650324 96650324 G A DLX5 Silent p.N198N 0.15 TCGA-CN-5360-01 7 97822447 97822447 T C LMTK2 Silent p.S890S 0.50 TCGA-CN-5360-01 8 104897854 104897854 C T RIMS2 Missense_Mutation p.P343S 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-5360-01 8 105360964 105360964 G A DCSTAMP Missense_Mutation p.A62T 0.37 tolerated(0.57) benign(0.001) TCGA-CN-5360-01 8 113293570 113293570 C A CSMD3 Missense_Mutation p.C3114F 0.29 deleterious(0) probably_damaging(0.979) TCGA-CN-5360-01 8 143623649 143623649 A T BAI1 Missense_Mutation p.T1352S 0.45 tolerated(0.33) benign(0.292) TCGA-CN-5360-01 8 143993368 143993368 G T CYP11B2 3'UTR 0.41 TCGA-CN-5360-01 8 144681057 144681057 G T TIGD5 Silent p.L328L 0.33 TCGA-CN-5360-01 8 145049407 145049407 C T PARP10 3'Flank 0.34 TCGA-CN-5360-01 8 1513941 1513941 C T DLGAP2 Silent p.A361A 0.15 TCGA-CN-5360-01 8 29025078 29025078 T A KIF13B Missense_Mutation p.T324S 0.40 deleterious(0) probably_damaging(0.997) TCGA-CN-5360-01 8 53451006 53451006 G C FAM150A Silent p.T129T 0.38 TCGA-CN-5360-01 8 54142037 54142037 G T OPRK1 Silent p.T321T 0.47 TCGA-CN-5360-01 8 55542575 55542575 G T RP1 Missense_Mutation p.G2045C 0.33 tolerated(0.05) possibly_damaging(0.888) TCGA-CN-5360-01 8 57079634 57079634 C G PLAG1 Missense_Mutation p.R224P 0.44 deleterious(0) probably_damaging(0.992) TCGA-CN-5360-01 8 67039550 67039550 C G TRIM55 Missense_Mutation p.T16S 0.34 tolerated(0.31) possibly_damaging(0.867) TCGA-CN-5360-01 8 77619832 77619832 G A ZFHX4 Missense_Mutation p.G881D 0.35 probably_damaging(0.969) TCGA-CN-5360-01 8 77765086 77765086 G C ZFHX4 Missense_Mutation p.A1977P 0.36 possibly_damaging(0.82) TCGA-CN-5360-01 8 86114380 86114380 A T E2F5 Splice_Site p.X79_splice 0.19 TCGA-CN-5360-01 8 95183180 95183180 A C CDH17 Missense_Mutation p.L273V 0.26 deleterious(0.03) probably_damaging(0.951) TCGA-CN-5360-01 9 107360955 107360955 A C OR13C5 Missense_Mutation p.V247G 0.21 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 9 113261433 113261433 C T SVEP1 Silent p.T523T 0.30 TCGA-CN-5360-01 9 118950444 118950444 C G PAPPA Missense_Mutation p.P476R 0.22 deleterious(0) probably_damaging(0.954) TCGA-CN-5360-01 9 123776180 123776180 G C C5 Missense_Mutation p.S743C 0.24 deleterious(0.03) benign(0.353) TCGA-CN-5360-01 9 125084837 125084837 G A MRRF Missense_Mutation p.D244N 0.16 tolerated(0.32) benign(0.026) TCGA-CN-5360-01 9 127670691 127670691 T C GOLGA1 Missense_Mutation p.S344G 0.20 tolerated(0.23) benign(0.005) TCGA-CN-5360-01 9 130210254 130210255 TC - RPL12 Frame_Shift_Del p.E131Dfs*11 0.15 TCGA-CN-5360-01 9 135602855 135602855 T A AK8 Silent p.P396P 0.23 TCGA-CN-5360-01 9 136597649 136597649 C T SARDH Missense_Mutation p.E136K 0.17 tolerated(0.26) benign(0.102) TCGA-CN-5360-01 9 136599210 136599210 G C SARDH Missense_Mutation p.S29C 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.572) TCGA-CN-5360-01 9 137653806 137653806 G C COL5A1 Silent p.P657P 0.20 TCGA-CN-5360-01 9 138662904 138662904 G T KCNT1 Silent p.P657P 0.16 TCGA-CN-5360-01 9 139889998 139889998 G A CLIC3 Silent p.D55D 0.15 TCGA-CN-5360-01 9 14812864 14812864 C G FREM1 Missense_Mutation p.D947H 0.32 deleterious(0.04) benign(0.012) TCGA-CN-5360-01 9 21974693 21974693 C - CDKN2A Frame_Shift_Del p.G45Vfs*8 0.53 TCGA-CN-5360-01 9 65506460 65506460 G A SPATA31A7 Missense_Mutation p.A367V 0.26 tolerated(0.28) benign(0) TCGA-CN-5360-01 9 72459432 72459432 G T C9orf135 Splice_Site p.X51_splice 0.22 TCGA-CN-5360-01 9 74360468 74360468 T C TMEM2 Missense_Mutation p.D167G 0.20 deleterious(0.01) benign(0.142) TCGA-CN-5360-01 9 77599914 77599914 T A C9orf41 Missense_Mutation p.Y346F 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-CN-5360-01 9 79118629 79118629 G A GCNT1 3'UTR 0.26 TCGA-CN-5360-01 9 84608996 84608996 T C SPATA31D1 Missense_Mutation p.M1204T 0.21 deleterious(0) possibly_damaging(0.514) TCGA-CN-5360-01 9 84610013 84610013 C G SPATA31D1 Missense_Mutation p.P1543R 0.16 deleterious(0.04) possibly_damaging(0.563) TCGA-CN-5360-01 X 107037685 107037685 T C NCBP2L Missense_Mutation p.C79R 0.57 deleterious(0) probably_damaging(0.999) TCGA-CN-5360-01 X 132162179 132162179 C G USP26 Missense_Mutation p.E24Q 0.49 deleterious(0.01) probably_damaging(0.983) TCGA-CN-5360-01 X 134680705 134680705 G T DDX26B Missense_Mutation p.A170S 0.46 tolerated(0.63) benign(0.429) TCGA-CN-5360-01 X 139866414 139866414 G T CDR1 Missense_Mutation p.L40M 0.49 tolerated(0.19) possibly_damaging(0.82) TCGA-CN-5360-01 X 140994309 140994309 C A MAGEC1 Silent p.L373L 0.44 TCGA-CN-5360-01 X 140995492 140995492 G C MAGEC1 Missense_Mutation p.E768Q 0.44 deleterious_low_confidence(0) benign(0.403) TCGA-CN-5360-01 X 140995643 140995643 C A MAGEC1 Missense_Mutation p.P818H 0.46 tolerated_low_confidence(0.06) unknown(0) TCGA-CN-5360-01 X 142716466 142716466 C A SLITRK4 Missense_Mutation p.S820I 0.52 tolerated(0.61) benign(0.036) TCGA-CN-5360-01 X 142717845 142717845 G T SLITRK4 Missense_Mutation p.N360K 0.52 deleterious(0) benign(0.084) TCGA-CN-5360-01 X 144337280 144337280 C A SPANXN1 Nonsense_Mutation p.C55* 0.54 TCGA-CN-5360-01 X 153034499 153034499 G - PLXNB3 Frame_Shift_Del p.G478Afs*7 0.59 TCGA-CN-5360-01 X 153134316 153134316 C A L1CAM Silent p.A453A 0.48 TCGA-CN-5360-01 X 15349561 15349561 C G PIGA Silent p.S164S 0.48 TCGA-CN-5360-01 X 29414435 29414435 A T IL1RAPL1 Silent p.G141G 0.57 TCGA-CN-5360-01 X 30254123 30254123 G T MAGEB3 Missense_Mutation p.A28S 0.39 deleterious(0.02) possibly_damaging(0.734) TCGA-CN-5360-01 X 30254946 30254946 C G MAGEB3 Missense_Mutation p.A302G 0.55 deleterious(0) possibly_damaging(0.805) TCGA-CN-5360-01 X 30269234 30269234 C A MAGEB1 Silent p.I208I 0.30 TCGA-CN-5360-01 X 35989850 35989850 G T CXorf22 Missense_Mutation p.R706S 0.31 tolerated(0.08) benign(0.023) TCGA-CN-5360-01 X 47919477 47919477 G C ZNF630 Missense_Mutation p.I118M 0.50 tolerated(0.05) benign(0.157) TCGA-CN-5360-01 X 68382107 68382107 T A PJA1 Missense_Mutation p.K325N 0.47 deleterious(0.04) benign(0.142) TCGA-CN-5360-01 X 70340889 70340889 G T MED12 Missense_Mutation p.G208W 0.54 possibly_damaging(0.571) TCGA-CN-5360-01 X 73963450 73963450 A G KIAA2022 Silent p.Y314Y 0.47 TCGA-CN-5360-01 X 75004401 75004401 G T MAGEE2 Missense_Mutation p.F162L 0.44 tolerated(0.68) benign(0) TCGA-CN-5360-01 X 79281194 79281194 G T TBX22 Missense_Mutation p.C184F 0.39 tolerated(0.1) probably_damaging(0.997) TCGA-CN-5360-01 X 84258908 84258908 G T APOOL 5'UTR 0.39 TCGA-CN-5360-01 X 86069720 86069720 A - DACH2 Frame_Shift_Del p.T525Pfs*33 0.37 TCGA-CN-5360-01 X 90691137 90691137 G T PABPC5 Silent p.A187A 0.62 TCGA-CN-5360-01 X 90691163 90691163 C A PABPC5 Missense_Mutation p.A196E 0.47 tolerated(0.75) benign(0.009) TCGA-CN-5360-01 X 91132319 91132319 C A PCDH11X Silent p.I360I 0.29 TCGA-CN-5360-01 X 91134249 91134249 C T PCDH11X Missense_Mutation p.P1004S 0.36 deleterious(0.05) benign(0.284) TCGA-CN-5360-01 X 99890221 99890221 A - TSPAN6 Frame_Shift_Del p.L102Wfs*9 0.62 TCGA-CN-5361-01 10 121436874 121436874 A C BAG3 3'UTR 0.14 TCGA-CN-5361-01 10 24831690 24831691 - T KIAA1217 Frame_Shift_Ins p.Q1203Pfs*11 0.29 TCGA-CN-5361-01 10 27459203 27459208 GGGAAA - MASTL In_Frame_Del p.G439_K440del 0.13 TCGA-CN-5361-01 10 34671476 34671476 A C PARD3 Missense_Mutation p.L464R 0.24 deleterious(0) probably_damaging(0.929) TCGA-CN-5361-01 10 69908207 69908207 G T MYPN Missense_Mutation p.V410L 0.24 tolerated(0.52) benign(0.002) TCGA-CN-5361-01 10 73553321 73553321 C A CDH23 5'Flank 0.27 TCGA-CN-5361-01 10 93390209 93390209 G A PPP1R3C Silent p.T143T 0.27 TCGA-CN-5361-01 11 105880075 105880075 T C MSANTD4 3'UTR 0.40 TCGA-CN-5361-01 11 128709328 128709328 C T KCNJ1 Missense_Mutation p.D290N 0.34 tolerated(0.05) possibly_damaging(0.474) TCGA-CN-5361-01 11 134131693 134131693 G A ACAD8 Missense_Mutation p.R334H 0.08 tolerated(0.11) probably_damaging(1) TCGA-CN-5361-01 11 47256422 47256422 C T DDB2 Missense_Mutation p.R273C 0.27 deleterious(0) probably_damaging(0.998) TCGA-CN-5361-01 11 55587681 55587681 T A OR5D18 Missense_Mutation p.D192E 0.20 deleterious(0) benign(0.253) TCGA-CN-5361-01 11 66463950 66463950 C G SPTBN2 Missense_Mutation p.R1359T 0.24 tolerated(0.38) benign(0) TCGA-CN-5361-01 11 66620711 66620711 G T PC Silent p.L504L 0.26 TCGA-CN-5361-01 11 67261028 67261028 G A PITPNM1 Silent p.V1065V 0.63 TCGA-CN-5361-01 11 68696781 68696781 G A IGHMBP2 Silent p.L397L 0.29 TCGA-CN-5361-01 11 68748063 68748063 G C MRGPRD Missense_Mutation p.I131M 0.10 tolerated(0.07) possibly_damaging(0.742) TCGA-CN-5361-01 11 77727556 77727557 - A KCTD14 3'UTR 0.33 TCGA-CN-5361-01 11 85627150 85627150 T - CCDC83 Frame_Shift_Del p.S351Vfs*12 0.28 TCGA-CN-5361-01 12 117155564 117155564 G A C12orf49 3'UTR 0.62 TCGA-CN-5361-01 12 121678561 121678561 G A CAMKK2 Missense_Mutation p.P570S 0.18 tolerated_low_confidence(0.11) benign(0.034) TCGA-CN-5361-01 12 122359424 122359424 G C WDR66 Missense_Mutation p.K71N 0.38 tolerated_low_confidence(0.46) benign(0.023) TCGA-CN-5361-01 12 20833104 20833104 C T PDE3A Nonsense_Mutation p.Q1109* 0.24 TCGA-CN-5361-01 12 52056740 52056740 G A SCN8A Missense_Mutation p.D47N 0.28 tolerated(0.27) benign(0.141) TCGA-CN-5361-01 12 56638175 56638175 C T ANKRD52 Missense_Mutation p.E923K 0.26 tolerated(0.94) benign(0.008) TCGA-CN-5361-01 12 66221845 66221845 G T HMGA2 Missense_Mutation p.S59I 0.17 deleterious(0.05) benign(0.403) TCGA-CN-5361-01 12 663005 663005 G A B4GALNT3 Missense_Mutation p.S639N 0.05 deleterious(0.04) benign(0.056) TCGA-CN-5361-01 12 69080780 69080780 G A NUP107 5'UTR 0.22 TCGA-CN-5361-01 12 97158907 97158907 G C C12orf55 Missense_Mutation p.R2731T 0.24 tolerated(0.21) benign(0) TCGA-CN-5361-01 13 101759854 101759854 G A NALCN Nonsense_Mutation p.R855* 0.46 TCGA-CN-5361-01 14 22948534 22948534 G A TRAJ56 Silent p.L9L 0.19 TCGA-CN-5361-01 14 24607452 24607452 C G PSME1 Silent p.G169G 0.25 TCGA-CN-5361-01 14 35252322 35252322 T C BAZ1A Intron 0.25 TCGA-CN-5361-01 14 54418769 54418769 C T BMP4 Missense_Mutation p.E58K 0.26 deleterious(0) probably_damaging(0.954) TCGA-CN-5361-01 14 61857999 61857999 C T PRKCH Silent p.F140F 0.23 TCGA-CN-5361-01 15 101588744 101588744 A T LRRK1 Missense_Mutation p.T1061S 0.24 tolerated(0.53) benign(0.066) TCGA-CN-5361-01 15 40659622 40659622 C A DISP2 Missense_Mutation p.L437M 0.20 tolerated(0.61) probably_damaging(0.987) TCGA-CN-5361-01 15 41145416 41145416 C A SPINT1 Silent p.R190R 0.25 TCGA-CN-5361-01 15 69011053 69011053 C T CORO2B Silent p.H328H 0.13 TCGA-CN-5361-01 15 78393518 78393518 C T SH2D7 Missense_Mutation p.P308L 0.22 tolerated(0.07) benign(0.007) TCGA-CN-5361-01 15 90176168 90176168 C T KIF7 Silent p.R926R 0.40 TCGA-CN-5361-01 15 90611606 90611606 G A ZNF710 Missense_Mutation p.G413S 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-CN-5361-01 16 22144336 22144336 C T VWA3A Missense_Mutation p.A663V 0.08 deleterious(0.04) probably_damaging(0.984) TCGA-CN-5361-01 16 23700659 23700659 C T PLK1 Silent p.D457D 0.34 TCGA-CN-5361-01 16 2762696 2762696 G A PRSS27 Silent p.T266T 0.38 TCGA-CN-5361-01 16 83065808 83065808 C G CDH13 Missense_Mutation p.I164M 0.26 tolerated(0.12) benign(0.358) TCGA-CN-5361-01 16 88691022 88691022 G A ZC3H18 Silent p.V637V 0.26 TCGA-CN-5361-01 17 10543464 10543464 G A MYH3 Missense_Mutation p.A844V 0.35 tolerated(0.11) benign(0.001) TCGA-CN-5361-01 17 33331461 33331462 - GC LIG3 Frame_Shift_Ins p.Q990Rfs*18 0.14 TCGA-CN-5361-01 17 44626048 44626048 G C LRRC37A2 Missense_Mutation p.E1181D 0.17 tolerated(0.13) probably_damaging(0.931) TCGA-CN-5361-01 17 57775075 57775076 - A PTRH2 Frame_Shift_Ins p.A89Cfs*15 0.24 TCGA-CN-5361-01 17 79095073 79095073 G A AATK Missense_Mutation p.P888L 0.11 tolerated(0.06) benign(0.02) TCGA-CN-5361-01 19 15350543 15350543 G A BRD4 Silent p.P1124P 0.52 TCGA-CN-5361-01 19 19431858 19431858 G A MAU2 Missense_Mutation p.E64K 0.24 tolerated(0.08) possibly_damaging(0.742) TCGA-CN-5361-01 19 40367904 40367904 G T FCGBP Nonsense_Mutation p.C4352* 0.21 TCGA-CN-5361-01 19 42128134 42128134 G A CEACAM4 Silent p.N144N 0.32 TCGA-CN-5361-01 19 47424000 47424000 G A ARHGAP35 Missense_Mutation p.D690N 0.25 deleterious(0.01) benign(0.205) TCGA-CN-5361-01 19 51227677 51227677 G C CLEC11A Silent p.L115L 0.29 TCGA-CN-5361-01 19 54664094 54664094 G C TMC4 Silent p.V696V 0.18 TCGA-CN-5361-01 19 55686277 55686277 T C SYT5 Missense_Mutation p.K267E 0.38 deleterious(0) probably_damaging(0.984) TCGA-CN-5361-01 19 55686278 55686278 C T SYT5 Silent p.L266L 0.37 TCGA-CN-5361-01 1 113189888 113189888 A C CAPZA1 Silent p.V32V 0.39 TCGA-CN-5361-01 1 148932860 148932860 G C RP11-14N7.2 RNA 0.06 TCGA-CN-5361-01 1 155025140 155025140 C G ADAM15 Intron 0.35 TCGA-CN-5361-01 1 155294510 155294514 CTCCT - RUSC1 Intron 0.45 TCGA-CN-5361-01 1 196967390 196967390 C G CFHR5 Nonsense_Mutation p.S368* 0.20 TCGA-CN-5361-01 1 201778369 201778369 C T NAV1 Missense_Mutation p.P1429S 0.05 tolerated(0.4) possibly_damaging(0.501) TCGA-CN-5361-01 1 204966390 204966390 A G NFASC Missense_Mutation p.T959A 0.21 tolerated(0.62) unknown(0) TCGA-CN-5361-01 1 230846411 230846411 G C AGT Silent p.P62P 0.08 TCGA-CN-5361-01 1 247654496 247654496 C A OR2W5 RNA 0.21 TCGA-CN-5361-01 1 57349161 57349161 C T C8A Missense_Mutation p.A221V 0.10 deleterious(0.01) possibly_damaging(0.75) TCGA-CN-5361-01 1 64515514 64515514 C T ROR1 Silent p.L105L 0.22 TCGA-CN-5361-01 1 75198855 75198855 T G CRYZ 5'UTR 0.25 TCGA-CN-5361-01 1 75229825 75229825 A G TYW3 3'UTR 0.22 TCGA-CN-5361-01 1 78591604 78591604 G A GIPC2 Missense_Mutation p.D252N 0.21 tolerated(0.09) benign(0.012) TCGA-CN-5361-01 1 91403466 91403473 TTTTTCTT - ZNF644 Frame_Shift_Del p.E1086Vfs*2 0.26 TCGA-CN-5361-01 1 93602313 93602313 C A MTF2 Missense_Mutation p.P504Q 0.26 tolerated(0.08) benign(0.254) TCGA-CN-5361-01 1 9787005 9787005 G A PIK3CD Silent p.L1012L 0.27 TCGA-CN-5361-01 20 36850904 36850904 G T KIAA1755 Silent p.T788T 0.28 TCGA-CN-5361-01 20 45867756 45867756 G A ZMYND8 Missense_Mutation p.T804M 0.27 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-CN-5361-01 20 47752436 47752436 G C STAU1 Silent p.L181L 0.18 TCGA-CN-5361-01 20 48568682 48568682 G C RNF114 3'UTR 0.19 TCGA-CN-5361-01 20 52779266 52779266 G T CYP24A1 Missense_Mutation p.A327E 0.29 deleterious(0) probably_damaging(0.961) TCGA-CN-5361-01 20 62372799 62372801 CTT - SLC2A4RG In_Frame_Del p.L121del 0.16 TCGA-CN-5361-01 21 18937987 18937987 A G CXADR Missense_Mutation p.S359G 0.28 deleterious(0) benign(0.118) TCGA-CN-5361-01 22 19050747 19050747 G A DGCR2 Missense_Mutation p.S198F 0.19 deleterious(0) probably_damaging(0.99) TCGA-CN-5361-01 22 23055518 23055518 G T IGLV3-21 Missense_Mutation p.A61S 0.24 tolerated(0.18) benign(0.088) TCGA-CN-5361-01 22 44234792 44234792 G A SULT4A1 Nonsense_Mutation p.R155* 0.23 TCGA-CN-5361-01 22 50962708 50962708 C T SCO2 Missense_Mutation p.E45K 0.32 tolerated(0.38) benign(0.002) TCGA-CN-5361-01 22 50962761 50962761 C T SCO2 Missense_Mutation p.G27E 0.19 tolerated(0.11) benign(0.008) TCGA-CN-5361-01 22 50962769 50962769 C T SCO2 Silent p.G24G 0.17 TCGA-CN-5361-01 2 133540069 133540069 T C NCKAP5 Missense_Mutation p.T1439A 0.28 tolerated(0.63) benign(0.081) TCGA-CN-5361-01 2 149270604 149270604 A G MBD5 3'UTR 0.27 TCGA-CN-5361-01 2 160087530 160087530 A T TANC1 3'UTR 0.19 TCGA-CN-5361-01 2 160239306 160239306 T A BAZ2B Missense_Mutation p.I1257F 0.26 benign(0.402) TCGA-CN-5361-01 2 161030575 161030575 G A ITGB6 Silent p.F223F 0.24 TCGA-CN-5361-01 2 179214036 179214036 C T OSBPL6 Missense_Mutation p.P383L 0.22 deleterious(0.02) benign(0.187) TCGA-CN-5361-01 2 179476145 179476145 G A TTN Silent p.S16937S 0.21 TCGA-CN-5361-01 2 238253355 238253355 C G COL6A3 Missense_Mutation p.E2436Q 0.20 unknown(0) TCGA-CN-5361-01 2 238253401 238253401 C G COL6A3 Silent p.R2420R 0.24 TCGA-CN-5361-01 2 26203523 26203523 G T KIF3C Missense_Mutation p.P422T 0.24 benign(0.001) TCGA-CN-5361-01 2 37215951 37215951 G A HEATR5B Missense_Mutation p.R1917C 0.29 tolerated(0.06) possibly_damaging(0.663) TCGA-CN-5361-01 2 61597672 61597672 A G USP34 Silent p.N373N 0.26 TCGA-CN-5361-01 2 69601183 69601183 T G GFPT1 Missense_Mutation p.I24L 0.24 tolerated(0.97) benign(0.006) TCGA-CN-5361-01 2 80530937 80530937 A G LRRTM1 Missense_Mutation p.F3S 0.22 deleterious(0) probably_damaging(0.979) TCGA-CN-5361-01 3 148889972 148889972 A G HPS3 Missense_Mutation p.Y993C 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-CN-5361-01 3 184039213 184039213 G T EIF4G1 Missense_Mutation p.A288S 0.16 tolerated(0.46) benign(0.06) TCGA-CN-5361-01 3 184039214 184039214 C T EIF4G1 Missense_Mutation p.A288V 0.17 tolerated(0.15) benign(0.033) TCGA-CN-5361-01 3 189526081 189526081 G T TP63 Silent p.G115G 0.49 TCGA-CN-5361-01 3 196434583 196434583 T A CEP19 Nonsense_Mutation p.K115* 0.16 TCGA-CN-5361-01 3 39186502 39186502 T A CSRNP1 Missense_Mutation p.M151L 0.39 tolerated(0.1) benign(0.001) TCGA-CN-5361-01 3 4699938 4699938 G A ITPR1 Missense_Mutation p.R361H 0.30 tolerated(0.06) possibly_damaging(0.877) TCGA-CN-5361-01 3 48626135 48626135 G A COL7A1 Nonsense_Mutation p.R843* 0.36 TCGA-CN-5361-01 4 103578879 103578879 T C MANBA Missense_Mutation p.Y555C 0.24 deleterious(0) probably_damaging(1) TCGA-CN-5361-01 4 104511031 104511031 G A TACR3 Silent p.T402T 0.24 TCGA-CN-5361-01 4 120528105 120528105 G T PDE5A Missense_Mutation p.A167D 0.30 deleterious(0.03) possibly_damaging(0.699) TCGA-CN-5361-01 4 159560442 159560442 C G RXFP1 Missense_Mutation p.I358M 0.16 deleterious(0.02) possibly_damaging(0.77) TCGA-CN-5361-01 4 160252611 160252611 A G RAPGEF2 Missense_Mutation p.N338S 0.25 deleterious(0) probably_damaging(1) TCGA-CN-5361-01 4 85731060 85731060 T A WDFY3 Silent p.V775V 0.26 TCGA-CN-5361-01 5 11384811 11384811 G C CTNND2 Silent p.A381A 0.23 TCGA-CN-5361-01 5 176396609 176396609 G T UIMC1 Silent p.L152L 0.50 TCGA-CN-5361-01 5 180582306 180582306 G T OR2V2 Missense_Mutation p.D122Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-CN-5361-01 5 45396672 45396672 G C HCN1 Silent p.T384T 0.24 TCGA-CN-5361-01 5 94849321 94849321 T A TTC37 Missense_Mutation p.Y911F 0.32 deleterious(0.04) probably_damaging(0.947) TCGA-CN-5361-01 5 94849322 94849322 A T TTC37 Missense_Mutation p.Y911N 0.32 deleterious(0.03) probably_damaging(0.935) TCGA-CN-5361-01 6 100368869 100368869 C A MCHR2 Missense_Mutation p.A324S 0.19 tolerated(0.24) benign(0.001) TCGA-CN-5361-01 6 118228939 118228939 C A SLC35F1 Missense_Mutation p.A17D 0.20 tolerated_low_confidence(0.51) unknown(0) TCGA-CN-5361-01 6 134308158 134308158 A G TBPL1 Missense_Mutation p.S181G 0.21 deleterious(0.03) benign(0.266) TCGA-CN-5361-01 6 152129446 152129446 G A ESR1 Silent p.E133E 0.42 TCGA-CN-5361-01 6 27925495 27925495 G A OR2B6 Silent p.L159L 0.30 TCGA-CN-5361-01 6 51947979 51947979 C T PKHD1 Missense_Mutation p.D43N 0.10 tolerated(0.12) benign(0.127) TCGA-CN-5361-01 6 56999545 56999545 C T ZNF451 Silent p.F193F 0.25 TCGA-CN-5361-01 6 63990490 63990490 A G LGSN Silent p.D322D 0.28 TCGA-CN-5361-01 6 74516767 74516767 C G CD109 Missense_Mutation p.T1054S 0.24 tolerated(0.24) benign(0.098) TCGA-CN-5361-01 6 76527375 76527375 A G MYO6 Silent p.K37K 0.19 TCGA-CN-5361-01 6 87969024 87969024 C T ZNF292 Nonsense_Mutation p.Q1893* 0.26 TCGA-CN-5361-01 7 108112931 108112935 CTTGA - PNPLA8 Frame_Shift_Del p.S753Rfs*9 0.14 TCGA-CN-5361-01 7 128097493 128097493 C G HILPDA Missense_Mutation p.D57E 0.21 tolerated_low_confidence(0.32) benign(0.043) TCGA-CN-5361-01 7 128852282 128852282 C T SMO Missense_Mutation p.S785L 0.21 deleterious_low_confidence(0.04) benign(0.011) TCGA-CN-5361-01 7 142460802 142460802 G A PRSS1 Silent p.K225K 0.04 TCGA-CN-5361-01 7 158454900 158454900 G A NCAPG2 Silent p.L659L 0.26 TCGA-CN-5361-01 7 44715628 44715628 C A OGDH Silent p.T362T 0.55 TCGA-CN-5361-01 7 47385791 47385791 G C TNS3 Silent p.V815V 0.20 TCGA-CN-5361-01 8 101153460 101153460 A T FBXO43 Nonsense_Mutation p.L341* 0.22 TCGA-CN-5361-01 8 144358773 144358773 C T GLI4 Silent p.L310L 0.39 TCGA-CN-5361-01 8 77619978 77619978 C A ZFHX4 Missense_Mutation p.L930I 0.18 possibly_damaging(0.567) TCGA-CN-5361-01 8 79598823 79598823 C T ZC2HC1A Missense_Mutation p.P111L 0.20 deleterious(0) probably_damaging(1) TCGA-CN-5361-01 9 113013678 113013678 G A TXN Missense_Mutation p.T30M 0.26 tolerated(0.08) benign(0.421) TCGA-CN-5361-01 9 140128317 140128317 C A SLC34A3 Silent p.T283T 0.24 TCGA-CN-5361-01 X 103080242 103080242 T C RAB9B Missense_Mutation p.D158G 0.57 tolerated(0.51) benign(0.204) TCGA-CN-5361-01 X 30254048 30254048 C T MAGEB3 Missense_Mutation p.R3W 0.52 deleterious(0.03) possibly_damaging(0.643) TCGA-CN-5361-01 X 40571488 40571488 G T MED14 Missense_Mutation p.S280Y 0.54 deleterious(0) possibly_damaging(0.653) TCGA-CN-5363-01 10 106924096 106924096 G A SORCS3 Missense_Mutation p.G590S 0.43 tolerated(0.76) benign(0.002) TCGA-CN-5363-01 10 116602933 116602933 C T FAM160B1 Missense_Mutation p.P255L 0.36 tolerated(0.08) benign(0.005) TCGA-CN-5363-01 10 118351941 118351941 C T PNLIPRP1 Missense_Mutation p.S73F 0.41 deleterious(0.01) benign(0.349) TCGA-CN-5363-01 10 124339305 124339305 C A DMBT1 Silent p.V297V 0.44 TCGA-CN-5363-01 10 26310631 26310631 C G MYO3A Intron 0.34 TCGA-CN-5363-01 10 26310633 26310633 A T MYO3A Intron 0.34 TCGA-CN-5363-01 10 95791310 95791310 G A PLCE1 Silent p.Q169Q 0.44 TCGA-CN-5363-01 11 1217261 1217261 C T MUC5AC RNA 0.30 TCGA-CN-5363-01 11 18723384 18723386 TCT - TMEM86A In_Frame_Del p.F186del 0.40 TCGA-CN-5363-01 11 19077130 19077130 C T MRGPRX2 Missense_Mutation p.A274T 0.30 deleterious(0.03) possibly_damaging(0.764) TCGA-CN-5363-01 11 32781750 32781750 T A CCDC73 Missense_Mutation p.T14S 0.30 tolerated(0.18) unknown(0) TCGA-CN-5363-01 11 4471232 4471232 C G OR52K2 Missense_Mutation p.I221M 0.37 tolerated(0.09) possibly_damaging(0.467) TCGA-CN-5363-01 11 50003946 50003946 A C OR4C12 Missense_Mutation p.V31G 0.31 deleterious_low_confidence(0) benign(0.075) TCGA-CN-5363-01 11 55595068 55595068 C T OR5L2 Missense_Mutation p.A125V 0.25 deleterious(0) probably_damaging(0.998) TCGA-CN-5363-01 11 55944902 55944902 A C OR5J2 Missense_Mutation p.Q270P 0.16 deleterious(0.02) possibly_damaging(0.811) TCGA-CN-5363-01 11 5730848 5730848 C T TRIM22 Silent p.V489V 0.28 TCGA-CN-5363-01 11 59634013 59634013 G A TCN1 5'UTR 0.13 TCGA-CN-5363-01 11 65271837 65271840 TGTT - MALAT1 RNA 0.15 TCGA-CN-5363-01 11 66460712 66460712 G A SPTBN2 Missense_Mutation p.A1600V 0.21 tolerated(0.25) probably_damaging(0.998) TCGA-CN-5363-01 11 8435138 8435138 C A STK33 Missense_Mutation p.K416N 0.31 tolerated(0.15) possibly_damaging(0.478) TCGA-CN-5363-01 11 86802426 86802426 A T TMEM135 Missense_Mutation p.M129L 0.38 tolerated(0.2) benign(0.001) TCGA-CN-5363-01 12 113444353 113444353 G T OAS2 Missense_Mutation p.R535L 0.32 deleterious(0.04) possibly_damaging(0.492) TCGA-CN-5363-01 12 117465849 117465849 C T FBXW8 Missense_Mutation p.R557C 0.05 tolerated(0.2) benign(0.004) TCGA-CN-5363-01 12 120195319 120195319 G C CIT Silent p.L854L 0.16 TCGA-CN-5363-01 12 129694087 129694087 G T TMEM132D Nonsense_Mutation p.S474* 0.10 TCGA-CN-5363-01 12 133331554 133331554 C G ANKLE2 Missense_Mutation p.R116T 0.33 tolerated(0.7) benign(0.001) TCGA-CN-5363-01 12 14959602 14959602 C A SMCO3 Missense_Mutation p.D5Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-CN-5363-01 12 40258621 40258621 C G SLC2A13 Missense_Mutation p.R421P 0.16 tolerated(1) benign(0.002) TCGA-CN-5363-01 12 49883256 49883256 G C SPATS2 Silent p.A38A 0.30 TCGA-CN-5363-01 12 57409476 57409476 G T TAC3 Missense_Mutation p.R36S 0.10 tolerated(0.08) benign(0.031) TCGA-CN-5363-01 12 9310409 9310409 G T PZP Missense_Mutation p.S1108Y 0.21 deleterious(0) probably_damaging(0.977) TCGA-CN-5363-01 13 49281382 49281382 C T CYSLTR2 Silent p.P143P 0.27 TCGA-CN-5363-01 13 52971420 52971420 C T THSD1 Missense_Mutation p.S323N 0.38 tolerated(0.94) benign(0.003) TCGA-CN-5363-01 13 58208417 58208417 C T PCDH17 Silent p.N579N 0.21 TCGA-CN-5363-01 14 20020135 20020135 C T POTEM Missense_Mutation p.R29H 0.12 tolerated_low_confidence(0.22) benign(0.01) TCGA-CN-5363-01 14 21957451 21957451 C G TOX4 Missense_Mutation p.F233L 0.07 deleterious(0) benign(0.057) TCGA-CN-5363-01 14 23020971 23020971 A T AE000662.92 5'Flank 0.19 TCGA-CN-5363-01 14 24794669 24794670 AG - ADCY4 Frame_Shift_Del p.S579Cfs*9 0.22 TCGA-CN-5363-01 14 29237742 29237742 C T FOXG1 Silent p.P419P 0.31 TCGA-CN-5363-01 14 38678698 38678698 C A SSTR1 Missense_Mutation p.A35E 0.26 tolerated(0.86) unknown(0) TCGA-CN-5363-01 14 39517935 39517935 T A SEC23A Splice_Site p.X554_splice 0.13 TCGA-CN-5363-01 14 42356462 42356462 C A LRFN5 Missense_Mutation p.P212T 0.23 deleterious(0) probably_damaging(0.999) TCGA-CN-5363-01 14 50736024 50736024 C G L2HGDH Missense_Mutation p.V255L 0.19 tolerated(0.27) benign(0.107) TCGA-CN-5363-01 14 73985749 73985749 A T HEATR4 Missense_Mutation p.S396R 0.25 deleterious(0) benign(0.398) TCGA-CN-5363-01 14 76249857 76249857 C T TTLL5 Silent p.P990P 0.20 TCGA-CN-5363-01 14 80328091 80328091 C T NRXN3 Silent p.V990V 0.29 TCGA-CN-5363-01 15 25453289 25453289 C G SNORD115-21 RNA 0.29 TCGA-CN-5363-01 15 25494401 25494401 T A SNORD115-43 RNA 0.26 TCGA-CN-5363-01 15 29386517 29386517 G T APBA2 Splice_Site p.X417_splice 0.27 TCGA-CN-5363-01 15 45848262 45848262 A G RP11-96O20.2 5'Flank 0.42 TCGA-CN-5363-01 15 58471405 58471405 G C AQP9 Missense_Mutation p.E192Q 0.16 tolerated(0.12) benign(0.186) TCGA-CN-5363-01 15 64041644 64041644 C A HERC1 Missense_Mutation p.G714V 0.34 probably_damaging(0.99) TCGA-CN-5363-01 16 32890973 32890973 G T SLC6A10P RNA 0.39 TCGA-CN-5363-01 16 50332901 50332901 G C ADCY7 Silent p.R345R 0.18 TCGA-CN-5363-01 16 57597828 57597828 C T GPR114 Silent p.C122C 0.29 TCGA-CN-5363-01 16 65026867 65026867 C A CDH11 Silent p.V198V 0.17 TCGA-CN-5363-01 16 69155027 69155027 C A CHTF8 Missense_Mutation p.G24W 0.12 deleterious(0) probably_damaging(1) TCGA-CN-5363-01 16 70863519 70863519 A T HYDIN Splice_Site p.X4704_splice 0.18 TCGA-CN-5363-01 16 815291 815291 G A MSLN Missense_Mutation p.G231E 0.46 tolerated(0.67) benign(0.063) TCGA-CN-5363-01 16 88552448 88552448 G A ZFPM1 Missense_Mutation p.A48T 0.17 tolerated(0.62) benign(0.004) TCGA-CN-5363-01 17 18046140 18046140 C G MYO15A Missense_Mutation p.R1966G 0.09 unknown(0) TCGA-CN-5363-01 17 19315865 19315865 G T RNF112 Silent p.A50A 0.19 TCGA-CN-5363-01 17 28601109 28601109 A T BLMH Nonsense_Mutation p.L251* 0.23 TCGA-CN-5363-01 17 34308415 34308415 G A CCL16 Silent p.I14I 0.20 TCGA-CN-5363-01 17 41246660 41246660 T C BRCA1 Silent p.R296R 0.26 TCGA-CN-5363-01 17 48278851 48278851 C A COL1A1 Silent p.R8R 0.12 TCGA-CN-5363-01 17 54969014 54969014 G A TRIM25 3'UTR 0.21 TCGA-CN-5363-01 17 55195783 55195783 G T AKAP1 Nonsense_Mutation p.E848* 0.04 TCGA-CN-5363-01 17 56348209 56348209 G C MPO Missense_Mutation p.N682K 0.06 tolerated(0.35) benign(0.19) TCGA-CN-5363-01 17 650277 650282 GGAGCA T GEMIN4 Frame_Shift_Del p.V334Efs*43 0.13 TCGA-CN-5363-01 17 65174991 65174991 C A HELZ Missense_Mutation p.R405L 0.10 deleterious(0.04) probably_damaging(0.965) TCGA-CN-5363-01 17 7577092 7577092 C - TP53 Frame_Shift_Del p.R283Afs*62 0.34 TCGA-CN-5363-01 17 8111074 8111074 A G AURKB Missense_Mutation p.S45P 0.24 deleterious(0.05) benign(0.001) TCGA-CN-5363-01 18 13760088 13760088 G A RNMT 3'UTR 0.20 TCGA-CN-5363-01 18 30254696 30254696 C T KLHL14 Missense_Mutation p.G604E 0.29 tolerated(0.14) probably_damaging(0.994) TCGA-CN-5363-01 18 74154630 74154630 C A ZNF516 Silent p.L127L 0.54 TCGA-CN-5363-01 19 19822314 19822314 A T ZNF14 Nonsense_Mutation p.C592* 0.40 TCGA-CN-5363-01 19 50412642 50412642 C T NUP62 Silent p.V141V 0.08 TCGA-CN-5363-01 19 51020919 51020919 C A LRRC4B Missense_Mutation p.G684V 0.34 tolerated_low_confidence(0.46) benign(0.058) TCGA-CN-5363-01 19 51961699 51961699 C G SIGLEC8 5'UTR 0.13 TCGA-CN-5363-01 19 52954882 52954882 T G ZNF578 5'Flank 0.21 TCGA-CN-5363-01 19 56733088 56733088 G A ZSCAN5A Silent p.F449F 0.25 TCGA-CN-5363-01 1 117208931 117208931 C G IGSF3 Silent p.P6P 0.14 TCGA-CN-5363-01 1 147380566 147380566 G A GJA8 Missense_Mutation p.E162K 0.22 deleterious(0) probably_damaging(1) TCGA-CN-5363-01 1 152800041 152800041 A C LCE1A Silent p.P31P 0.24 TCGA-CN-5363-01 1 155340386 155340386 C A ASH1L Missense_Mutation p.D2199Y 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-5363-01 1 17263291 17263291 G A CROCC Silent p.R372R 0.17 TCGA-CN-5363-01 1 176668318 176668318 G A PAPPA2 Silent p.T943T 0.24 TCGA-CN-5363-01 1 197128473 197128473 G A ZBTB41 3'UTR 0.26 TCGA-CN-5363-01 1 207071111 207071111 C G IL24 5'UTR 0.13 TCGA-CN-5363-01 1 214178607 214178607 G A PROX1 Missense_Mutation p.D609N 0.18 deleterious(0) probably_damaging(0.984) TCGA-CN-5363-01 1 214557343 214557343 G C PTPN14 Missense_Mutation p.Q619E 0.28 tolerated(0.26) probably_damaging(0.977) TCGA-CN-5363-01 1 222803588 222803588 A G MIA3 Missense_Mutation p.N1009S 0.19 tolerated(1) benign(0.006) TCGA-CN-5363-01 1 228596365 228596365 T C TRIM17 Missense_Mutation p.E324G 0.23 deleterious(0.01) benign(0.003) TCGA-CN-5363-01 1 237604656 237604656 G C RYR2 Missense_Mutation p.G348A 0.20 probably_damaging(0.985) TCGA-CN-5363-01 1 237758918 237758918 A T RYR2 Silent p.T1519T 0.16 TCGA-CN-5363-01 1 247615247 247615247 G T OR2B11 Missense_Mutation p.P13H 0.22 deleterious(0.01) possibly_damaging(0.635) TCGA-CN-5363-01 1 248224038 248224038 C A OR2L3 Missense_Mutation p.P19T 0.18 tolerated(0.34) benign(0.183) TCGA-CN-5363-01 1 2938694 2938694 C T ACTRT2 Silent p.A148A 0.18 TCGA-CN-5363-01 1 38227191 38227191 C T EPHA10 Missense_Mutation p.G246R 0.45 tolerated(0.13) probably_damaging(0.998) TCGA-CN-5363-01 1 40702667 40702667 A G RLF Missense_Mutation p.K765E 0.20 tolerated(0.76) benign(0.085) TCGA-CN-5363-01 1 4715487 4715487 T C AJAP1 Translation_Start_Site p.M1? 0.21 deleterious(0) benign(0.092) TCGA-CN-5363-01 1 53683848 53683848 T A C1orf123 Missense_Mutation p.Y86F 0.15 tolerated(0.16) probably_damaging(1) TCGA-CN-5363-01 1 55144987 55144987 G T MROH7 Missense_Mutation p.A701S 0.16 deleterious(0.01) possibly_damaging(0.685) TCGA-CN-5363-01 1 70555457 70555457 T C LRRC7 Silent p.S1462S 0.16 TCGA-CN-5363-01 1 75172657 75172657 T A CRYZ Missense_Mutation p.I252F 0.18 deleterious(0) benign(0.224) TCGA-CN-5363-01 1 92327166 92327166 T C TGFBR3 5'UTR 0.17 TCGA-CN-5363-01 1 93651989 93651989 G A CCDC18 Missense_Mutation p.V185I 0.27 tolerated(0.23) benign(0.03) TCGA-CN-5363-01 20 24937978 24937978 A G CST7 Missense_Mutation p.I42M 0.24 tolerated(0.2) possibly_damaging(0.676) TCGA-CN-5363-01 20 61572952 61572952 T A GID8 Missense_Mutation p.I33N 0.25 deleterious(0) probably_damaging(0.994) TCGA-CN-5363-01 22 23656152 23656152 C T BCR Intron 0.25 TCGA-CN-5363-01 22 26164925 26164925 A G MYO18B Missense_Mutation p.T348A 0.28 tolerated_low_confidence(0.41) benign(0.009) TCGA-CN-5363-01 2 101014428 101014428 G C CHST10 Missense_Mutation p.F123L 0.21 deleterious(0.01) possibly_damaging(0.753) TCGA-CN-5363-01 2 128180744 128180744 C G PROC Missense_Mutation p.R133G 0.24 tolerated(0.21) benign(0.021) TCGA-CN-5363-01 2 128331588 128331589 GC - MYO7B Frame_Shift_Del p.R231Hfs*34 0.12 TCGA-CN-5363-01 2 133542068 133542068 C - NCKAP5 Frame_Shift_Del p.K772Nfs*29 0.24 TCGA-CN-5363-01 2 16082171 16082171 G A MYCN 5'UTR 0.29 TCGA-CN-5363-01 2 166848385 166848385 C T SCN1A Silent p.L1800L 0.16 TCGA-CN-5363-01 2 169699618 169699618 C T NOSTRIN Silent p.N207N 0.18 TCGA-CN-5363-01 2 175666459 175666459 C G CHN1 Missense_Mutation p.R395P 0.22 deleterious(0.01) benign(0.434) TCGA-CN-5363-01 2 179447313 179447313 G C TTN Missense_Mutation p.P21957R 0.11 TCGA-CN-5363-01 2 179590124 179590124 C G TTN Missense_Mutation p.R6936T 0.37 TCGA-CN-5363-01 2 207953303 207953303 C T KLF7 Missense_Mutation p.E246K 0.19 deleterious(0) probably_damaging(0.973) TCGA-CN-5363-01 2 209169573 209169573 C G PIKFYVE Missense_Mutation p.S491C 0.09 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-CN-5363-01 2 21245717 21245717 C A APOB Missense_Mutation p.K934N 0.24 probably_damaging(0.998) TCGA-CN-5363-01 2 220312735 220312735 C T SPEG Silent p.D285D 0.24 TCGA-CN-5363-01 2 228476044 228476044 C A C2orf83 3'UTR 0.29 TCGA-CN-5363-01 2 234465564 234465564 C A USP40 Silent p.L173L 0.24 TCGA-CN-5363-01 2 242435076 242435076 T C STK25 3'UTR 0.30 TCGA-CN-5363-01 2 43776495 43776495 C A THADA Missense_Mutation p.R987L 0.20 tolerated(0.09) probably_damaging(0.963) TCGA-CN-5363-01 2 50847323 50847323 T A NRXN1 Splice_Site p.X427_splice 0.07 TCGA-CN-5363-01 2 64780055 64780055 G T AFTPH Missense_Mutation p.D483Y 0.16 deleterious(0) probably_damaging(0.967) TCGA-CN-5363-01 2 74089382 74089382 G A STAMBP Missense_Mutation p.R424Q 0.15 deleterious(0) probably_damaging(0.99) TCGA-CN-5363-01 2 79254986 79254986 T C REG3G Silent p.N129N 0.16 TCGA-CN-5363-01 2 98828426 98828426 A T VWA3B Nonsense_Mutation p.K591* 0.23 TCGA-CN-5363-01 3 108403092 108403092 G C DZIP3 Silent p.V971V 0.22 TCGA-CN-5363-01 3 121340297 121340297 C A FBXO40 Silent p.S7S 0.13 TCGA-CN-5363-01 3 123634533 123634533 G A CCDC14 Missense_Mutation p.S611F 0.27 deleterious(0) benign(0.227) TCGA-CN-5363-01 3 126272239 126272239 A T C3orf22 5'UTR 0.22 TCGA-CN-5363-01 3 151094808 151094808 C G MED12L Missense_Mutation p.N1351K 0.22 tolerated(0.05) benign(0.014) TCGA-CN-5363-01 3 156411959 156411959 A T TIPARP Silent p.G356G 0.24 TCGA-CN-5363-01 3 156710895 156710895 C T RP11-6F2.3 5'Flank 0.19 TCGA-CN-5363-01 3 164905718 164905718 G A SLITRK3 Silent p.L967L 0.23 TCGA-CN-5363-01 3 164906404 164906404 C T SLITRK3 Missense_Mutation p.V739M 0.28 deleterious(0) probably_damaging(0.956) TCGA-CN-5363-01 3 179095193 179095193 C T MFN1 Missense_Mutation p.S429L 0.20 tolerated(0.7) benign(0.094) TCGA-CN-5363-01 3 182602582 182602582 G C ATP11B Missense_Mutation p.D851H 0.23 deleterious(0) probably_damaging(1) TCGA-CN-5363-01 3 186358267 186358267 C T FETUB Silent p.P6P 0.14 TCGA-CN-5363-01 3 196664128 196664128 T A NCBP2 Intron 0.35 TCGA-CN-5363-01 3 35748546 35748546 A T ARPP21 Missense_Mutation p.N256I 0.33 deleterious(0) possibly_damaging(0.833) TCGA-CN-5363-01 3 38035866 38035866 C A VILL Missense_Mutation p.Q84K 0.35 deleterious(0.04) benign(0.005) TCGA-CN-5363-01 3 404935 404935 G C CHL1 Missense_Mutation p.R485T 0.23 tolerated(0.4) benign(0.039) TCGA-CN-5363-01 3 8944189 8944189 C A RAD18 Missense_Mutation p.S348I 0.27 deleterious(0.01) benign(0.444) TCGA-CN-5363-01 3 93781974 93781974 C T NSUN3 Silent p.L2L 0.22 TCGA-CN-5363-01 3 93782067 93782067 T G DHFRL1 5'UTR 0.25 TCGA-CN-5363-01 4 103988651 103988651 C A SLC9B2 Missense_Mutation p.M19I 0.26 tolerated(0.49) benign(0.001) TCGA-CN-5363-01 4 106604207 106604207 C T INTS12 Missense_Mutation p.V358I 0.24 tolerated_low_confidence(0.17) benign(0.002) TCGA-CN-5363-01 4 110667391 110667391 C G CFI Missense_Mutation p.W472C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CN-5363-01 4 115858571 115858571 C A NDST4 Missense_Mutation p.W437L 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-CN-5363-01 4 123336765 123336765 C A ADAD1 Missense_Mutation p.T494N 0.20 deleterious(0) possibly_damaging(0.868) TCGA-CN-5363-01 4 143350367 143350367 A G INPP4B Missense_Mutation p.I32T 0.30 deleterious(0.03) benign(0.004) TCGA-CN-5363-01 4 147561057 147561057 C A POU4F2 Silent p.A109A 0.20 TCGA-CN-5363-01 4 147741347 147741347 G A TTC29 Missense_Mutation p.A344V 0.07 deleterious(0.01) possibly_damaging(0.521) TCGA-CN-5363-01 4 155670238 155670238 A G LRAT Missense_Mutation p.T215A 0.19 tolerated(0.06) benign(0.005) TCGA-CN-5363-01 4 186544587 186544587 G T SORBS2 Missense_Mutation p.P762T 0.33 deleterious(0) probably_damaging(0.999) TCGA-CN-5363-01 4 55976627 55976627 G - KDR Frame_Shift_Del p.T401Pfs*28 0.20 TCGA-CN-5363-01 4 57182340 57182340 G A KIAA1211 Missense_Mutation p.G891E 0.17 deleterious(0.05) probably_damaging(0.969) TCGA-CN-5363-01 4 59413 59413 G T ZNF595 Missense_Mutation p.V32L 0.07 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-CN-5363-01 4 71232413 71232413 C A SMR3A Missense_Mutation p.A36D 0.22 tolerated_low_confidence(0.06) unknown(0) TCGA-CN-5363-01 4 81187969 81187969 G T FGF5 5'UTR 0.25 TCGA-CN-5363-01 4 95200121 95200121 A - SMARCAD1 Frame_Shift_Del p.M783Wfs*25 0.11 TCGA-CN-5363-01 5 1089145 1089145 C T SLC12A7 Silent p.V147V 0.22 TCGA-CN-5363-01 5 112917312 112917312 G T YTHDC2 Nonsense_Mutation p.E1185* 0.29 TCGA-CN-5363-01 5 113829151 113829151 T - KCNN2 Frame_Shift_Del p.L479Wfs*14 0.25 TCGA-CN-5363-01 5 125971893 125971893 G A C5orf48 Missense_Mutation p.S122N 0.14 deleterious(0.01) probably_damaging(0.982) TCGA-CN-5363-01 5 13716599 13716599 G T DNAH5 Silent p.I4302I 0.30 TCGA-CN-5363-01 5 13841180 13841180 A G DNAH5 Silent p.N1848N 0.19 TCGA-CN-5363-01 5 140214169 140214169 G T PCDHA7 Silent p.V67V 0.15 TCGA-CN-5363-01 5 140256976 140256976 C T PCDHA12 Missense_Mutation p.A640V 0.26 tolerated_low_confidence(0.08) benign(0.068) TCGA-CN-5363-01 5 140307075 140307075 C A PCDHAC1 Missense_Mutation p.L200M 0.21 deleterious(0.01) benign(0.052) TCGA-CN-5363-01 5 140720647 140720647 C T PCDHGA2 Silent p.V703V 0.25 TCGA-CN-5363-01 5 141233630 141233630 C T PCDH1 Missense_Mutation p.A1231T 0.09 tolerated_low_confidence(0.67) benign(0.075) TCGA-CN-5363-01 5 45353210 45353210 G C HCN1 Missense_Mutation p.L457V 0.23 deleterious(0) possibly_damaging(0.894) TCGA-CN-5363-01 5 52942221 52942221 G A NDUFS4 Missense_Mutation p.M112I 0.10 tolerated(0.09) benign(0.393) TCGA-CN-5363-01 5 55250717 55250717 C A IL6ST Missense_Mutation p.W457C 0.12 deleterious(0) probably_damaging(1) TCGA-CN-5363-01 5 65370963 65370963 C G ERBB2IP Missense_Mutation p.L1297V 0.24 tolerated(0.05) probably_damaging(0.997) TCGA-CN-5363-01 5 70308192 70308192 G C NAIP Missense_Mutation p.A184G 0.22 deleterious(0) probably_damaging(0.932) TCGA-CN-5363-01 5 73931933 73931933 C A ENC1 Missense_Mutation p.M126I 0.15 deleterious(0.03) benign(0.362) TCGA-CN-5363-01 5 77521392 77521392 C T AP3B1 Missense_Mutation p.E193K 0.22 deleterious(0.02) possibly_damaging(0.559) TCGA-CN-5363-01 5 94852062 94852062 T C TTC37 Missense_Mutation p.I877V 0.14 tolerated(0.25) benign(0.26) TCGA-CN-5363-01 6 131247798 131247798 G C EPB41L2 Missense_Mutation p.L253V 0.36 deleterious(0) probably_damaging(0.988) TCGA-CN-5363-01 6 155728305 155728305 G T NOX3 Missense_Mutation p.N513K 0.15 tolerated(0.28) possibly_damaging(0.825) TCGA-CN-5363-01 6 161519401 161519401 A T MAP3K4 Missense_Mutation p.S1206C 0.13 tolerated(0.07) benign(0.396) TCGA-CN-5363-01 6 27424701 27424701 C T ZNF184 Splice_Site p.X68_splice 0.31 TCGA-CN-5363-01 6 28473519 28473519 C A GPX6 Silent p.V140V 0.12 TCGA-CN-5363-01 6 31110480 31110480 G A CCHCR1 Silent p.V835V 0.27 TCGA-CN-5363-01 6 32797314 32797314 C G TAP2 Splice_Site p.X599_splice 0.16 TCGA-CN-5363-01 6 42231259 42231259 C A TRERF1 Silent p.P561P 0.27 TCGA-CN-5363-01 6 43306786 43306786 C A ZNF318 Silent p.L1650L 0.27 TCGA-CN-5363-01 6 44413419 44413419 G T CDC5L Missense_Mutation p.A707S 0.10 deleterious(0.01) benign(0.279) TCGA-CN-5363-01 6 46190997 46190997 T A RCAN2 Missense_Mutation p.S205C 0.15 deleterious(0) probably_damaging(0.998) TCGA-CN-5363-01 6 52101647 52101647 G T IL17F 3'UTR 0.27 TCGA-CN-5363-01 6 57015556 57015556 G T ZNF451 Missense_Mutation p.R883L 0.24 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-CN-5363-01 6 78172872 78172872 C A HTR1B Silent p.P83P 0.19 TCGA-CN-5363-01 6 88140765 88140765 G A C6ORF165 Missense_Mutation p.V392M 0.24 tolerated(0.14) possibly_damaging(0.526) TCGA-CN-5363-01 6 90052081 90052081 C G UBE2J1 Missense_Mutation p.E67Q 0.16 tolerated(0.05) probably_damaging(0.934) TCGA-CN-5363-01 7 100084710 100084710 G A NYAP1 Missense_Mutation p.R112Q 0.34 deleterious(0) probably_damaging(0.996) TCGA-CN-5363-01 7 100839228 100839228 T A MOGAT3 Nonstop_Mutation p.*342Lext*15 0.17 TCGA-CN-5363-01 7 101839913 101839913 G A CUX1 Splice_Site p.X419_splice 0.20 TCGA-CN-5363-01 7 117407111 117407111 A C CTTNBP2 Splice_Site p.X966_splice 0.21 TCGA-CN-5363-01 7 121699858 121699858 C T PTPRZ1 Silent p.H2241H 0.26 TCGA-CN-5363-01 7 134635184 134635184 A G CALD1 Silent p.K618K 0.33 TCGA-CN-5363-01 7 143882619 143882619 T A CTAGE4 Missense_Mutation p.L675I 0.20 tolerated(0.16) possibly_damaging(0.686) TCGA-CN-5363-01 7 146471453 146471453 C A CNTNAP2 Missense_Mutation p.A63D 0.33 deleterious(0) probably_damaging(0.996) TCGA-CN-5363-01 7 151880230 151880230 T A KMT2C Missense_Mutation p.R1698S 0.30 probably_damaging(0.998) TCGA-CN-5363-01 7 35129944 35129944 A T DPY19L2P1 RNA 0.17 TCGA-CN-5363-01 7 38398150 38398150 T A TRGV3 Missense_Mutation p.N106I 0.20 deleterious(0) possibly_damaging(0.689) TCGA-CN-5363-01 7 48046766 48046766 G T SUN3 Missense_Mutation p.T163K 0.26 tolerated(0.52) benign(0.002) TCGA-CN-5363-01 7 55874869 55874869 G A SEPT14 Silent p.T300T 0.25 TCGA-CN-5363-01 7 71177039 71177039 C A WBSCR17 Missense_Mutation p.L569M 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-CN-5363-01 7 82579984 82579984 A G PCLO Missense_Mutation p.L3307P 0.20 unknown(0) TCGA-CN-5363-01 8 113237020 113237020 T C CSMD3 Missense_Mutation p.T3702A 0.33 deleterious(0) probably_damaging(0.986) TCGA-CN-5363-01 8 113256623 113256623 C T CSMD3 Missense_Mutation p.A3468T 0.14 deleterious(0.03) benign(0.009) TCGA-CN-5363-01 8 113395847 113395847 C A CSMD3 Missense_Mutation p.D1994Y 0.28 deleterious(0) possibly_damaging(0.771) TCGA-CN-5363-01 8 12955928 12955930 AGA - DLC1 In_Frame_Del p.S1049del 0.28 TCGA-CN-5363-01 8 133723206 133723206 A G TMEM71 3'UTR 0.24 TCGA-CN-5363-01 8 139144990 139144990 G A FAM135B Missense_Mutation p.A1356V 0.15 deleterious(0.01) probably_damaging(0.946) TCGA-CN-5363-01 8 139153488 139153488 C G FAM135B Missense_Mutation p.G1248A 0.15 deleterious(0) probably_damaging(0.988) TCGA-CN-5363-01 8 139165358 139165358 A T FAM135B Missense_Mutation p.L454I 0.19 tolerated(0.24) benign(0.002) TCGA-CN-5363-01 8 19701638 19701638 G C INTS10 Missense_Mutation p.V591L 0.28 deleterious(0.03) benign(0.15) TCGA-CN-5363-01 8 66582207 66582207 G T MTFR1 Missense_Mutation p.R7L 0.10 deleterious(0.04) benign(0.246) TCGA-CN-5363-01 8 69434119 69434119 T - C8orf34 Frame_Shift_Del p.L284Qfs*31 0.17 TCGA-CN-5363-01 8 75233218 75233220 GTG TT JPH1 Nonsense_Mutation p.C101* 0.36 TCGA-CN-5363-01 9 100116995 100116995 G C CCDC180 Missense_Mutation p.Q1093H 0.43 deleterious(0) benign(0.387) TCGA-CN-5363-01 9 110250031 110250031 G A KLF4 Missense_Mutation p.P215L 0.62 tolerated(0.11) probably_damaging(0.992) TCGA-CN-5363-01 9 114289921 114289921 A G ZNF483 Silent p.R82R 0.45 TCGA-CN-5363-01 9 131140339 131140339 C T URM1 Silent p.D20D 0.10 TCGA-CN-5363-01 9 139395007 139395008 - A NOTCH1 Frame_Shift_Ins p.Q1978Pfs*17 0.44 TCGA-CN-5363-01 9 18777172 18777172 C T ADAMTSL1 Missense_Mutation p.A982V 0.05 tolerated(0.27) benign(0.001) TCGA-CN-5363-01 9 35100719 35100719 C G STOML2 Missense_Mutation p.G270A 0.06 tolerated(0.15) probably_damaging(0.999) TCGA-CN-5363-01 9 35717216 35717216 A T TLN1 Silent p.A795A 0.34 TCGA-CN-5363-01 9 71002394 71002394 C A PGM5 Missense_Mutation p.P196Q 0.34 deleterious(0.02) benign(0.078) TCGA-CN-5363-01 9 79959184 79959184 G T VPS13A Missense_Mutation p.R2381L 0.43 tolerated(0.29) benign(0.255) TCGA-CN-5363-01 X 134428026 134428026 G T ZNF75D Missense_Mutation p.P14H 0.44 deleterious(0) benign(0.018) TCGA-CN-5363-01 X 79698219 79698219 G C FAM46D Missense_Mutation p.A61P 0.53 deleterious(0) benign(0.356) TCGA-CN-5363-01 X 9728793 9728793 C T GPR143 Silent p.T108T 0.56 TCGA-CN-5364-01 10 105791933 105791933 G T COL17A1 3'UTR 0.16 TCGA-CN-5364-01 10 15175327 15175327 C G NMT2 Missense_Mutation p.D143H 0.18 deleterious(0.01) probably_damaging(0.957) TCGA-CN-5364-01 10 55591229 55591229 G A PCDH15 Missense_Mutation p.R1350C 0.19 deleterious(0) probably_damaging(1) TCGA-CN-5364-01 10 93586790 93586790 A G TNKS2 Missense_Mutation p.N271S 0.15 deleterious(0.03) probably_damaging(0.918) TCGA-CN-5364-01 11 108224518 108224518 C G ATM Missense_Mutation p.I2899M 0.42 deleterious(0) probably_damaging(0.99) TCGA-CN-5364-01 11 30032400 30032400 G A KCNA4 Missense_Mutation p.S609L 0.18 deleterious(0.03) benign(0.185) TCGA-CN-5364-01 11 47594881 47594881 C T KBTBD4 Silent p.E402E 0.23 TCGA-CN-5364-01 11 494726 494726 C G RNH1 Missense_Mutation p.E451Q 0.14 deleterious(0.02) possibly_damaging(0.561) TCGA-CN-5364-01 11 55579185 55579185 G T OR5L1 Missense_Mutation p.M81I 0.20 deleterious(0.02) benign(0.033) TCGA-CN-5364-01 11 56127847 56127847 A T OR8J1 Missense_Mutation p.N42I 0.20 deleterious(0) probably_damaging(1) TCGA-CN-5364-01 11 57003333 57003333 G A APLNR 3'UTR 0.21 TCGA-CN-5364-01 11 63312266 63312266 G A RARRES3 Missense_Mutation p.E98K 0.26 tolerated(0.1) benign(0.012) TCGA-CN-5364-01 11 63990913 63990913 G A FERMT3 Silent p.E651E 0.30 TCGA-CN-5364-01 11 64366325 64366325 C T SLC22A12 Missense_Mutation p.P334S 0.05 tolerated(0.79) benign(0.057) TCGA-CN-5364-01 11 64813578 64813578 C A NAALADL1 Missense_Mutation p.V622L 0.21 tolerated(0.65) benign(0.026) TCGA-CN-5364-01 11 65631171 65631171 G C MUS81 Missense_Mutation p.E314Q 0.08 deleterious(0.03) possibly_damaging(0.481) TCGA-CN-5364-01 11 66192180 66192180 G T NPAS4 Nonsense_Mutation p.E607* 0.05 TCGA-CN-5364-01 11 8413811 8413811 T G STK33 3'UTR 0.25 TCGA-CN-5364-01 12 102091698 102091698 C T CHPT1 Missense_Mutation p.P20L 0.33 tolerated(0.59) possibly_damaging(0.506) TCGA-CN-5364-01 12 102158435 102158435 T C GNPTAB Missense_Mutation p.I754V 0.22 tolerated_low_confidence(0.81) benign(0.001) TCGA-CN-5364-01 12 122966496 122966496 T C ZCCHC8 Missense_Mutation p.I291V 0.22 tolerated(0.07) possibly_damaging(0.615) TCGA-CN-5364-01 12 39223185 39223185 T A CPNE8 Missense_Mutation p.I135L 0.18 tolerated(1) benign(0.001) TCGA-CN-5364-01 12 64818445 64818445 C G XPOT Missense_Mutation p.Q417E 0.13 tolerated(0.28) benign(0.428) TCGA-CN-5364-01 12 71148454 71148454 C A PTPRR Intron 0.18 TCGA-CN-5364-01 13 25458151 25458151 A C CENPJ Missense_Mutation p.D1258E 0.23 deleterious(0) probably_damaging(0.965) TCGA-CN-5364-01 13 61034585 61034585 T G TDRD3 Silent p.S88S 0.11 TCGA-CN-5364-01 13 73366606 73366606 C G PIBF1 Missense_Mutation p.L92V 0.11 deleterious(0.04) probably_damaging(0.993) TCGA-CN-5364-01 13 99476724 99476724 G C DOCK9 Silent p.V1686V 0.18 TCGA-CN-5364-01 14 100615443 100615443 G A DEGS2 Silent p.F229F 0.07 TCGA-CN-5364-01 14 106091432 106091432 C G IGHG4 Missense_Mutation p.Q154H 0.14 deleterious(0.05) benign(0.013) TCGA-CN-5364-01 14 106204053 106204053 G C IGHG1 3'UTR 0.18 TCGA-CN-5364-01 14 47504386 47504386 C A MDGA2 Silent p.A549A 0.19 TCGA-CN-5364-01 14 75367830 75367830 G A DLST Missense_Mutation p.G374E 0.18 deleterious(0) probably_damaging(1) TCGA-CN-5364-01 15 25287155 25287155 G A SNORD109A RNA 0.16 TCGA-CN-5364-01 15 25430645 25430645 G A SNORD115-10 5'Flank 0.20 TCGA-CN-5364-01 15 65555578 65555578 C T PARP16 Nonsense_Mutation p.W200* 0.19 TCGA-CN-5364-01 15 75189376 75189376 C T MPI Missense_Mutation p.S290L 0.25 deleterious(0) probably_damaging(1) TCGA-CN-5364-01 16 3440148 3440148 G T ZSCAN32 5'UTR 0.24 TCGA-CN-5364-01 16 53358697 53358697 C T CHD9 Missense_Mutation p.P2846S 0.24 unknown(0) TCGA-CN-5364-01 16 67271255 67271256 - GGAGTCC FHOD1 Frame_Shift_Ins p.F294Gfs*29 0.07 TCGA-CN-5364-01 16 67709084 67709084 C G GFOD2 Missense_Mutation p.E378Q 0.15 tolerated(0.22) benign(0.235) TCGA-CN-5364-01 16 68344358 68344358 G T SLC7A6OS Missense_Mutation p.S117R 0.28 tolerated(0.37) benign(0.007) TCGA-CN-5364-01 16 772479 772479 C T FAM173A Silent p.S210S 0.30 TCGA-CN-5364-01 16 88601319 88601319 A T ZFPM1 Missense_Mutation p.S985C 0.25 deleterious(0) possibly_damaging(0.902) TCGA-CN-5364-01 17 1939319 1939319 G T DPH1 Missense_Mutation p.V117L 0.28 deleterious(0) probably_damaging(0.982) TCGA-CN-5364-01 17 42828155 42828155 C G DBF4B Missense_Mutation p.A461G 0.21 deleterious_low_confidence(0.01) benign(0) TCGA-CN-5364-01 17 66391318 66391318 C T ARSG Missense_Mutation p.S399L 0.06 tolerated(0.21) benign(0.03) TCGA-CN-5364-01 17 72764743 72764743 G A SLC9A3R1 Missense_Mutation p.R342Q 0.26 deleterious(0.03) benign(0.173) TCGA-CN-5364-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.24 TCGA-CN-5364-01 18 21745031 21745031 C T OSBPL1A Silent p.T916T 0.21 TCGA-CN-5364-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.20 deleterious(0.03) probably_damaging(1) TCGA-CN-5364-01 19 10221394 10221394 G A PPAN Missense_Mutation p.M351I 0.20 tolerated(0.5) benign(0.122) TCGA-CN-5364-01 19 10335464 10335464 T A S1PR2 Missense_Mutation p.I40F 0.15 tolerated(1) benign(0.004) TCGA-CN-5364-01 19 14569141 14569141 A T PKN1 Missense_Mutation p.H464L 0.11 deleterious(0) probably_damaging(0.99) TCGA-CN-5364-01 19 20003522 20003522 T C ZNF253 Missense_Mutation p.L489S 0.20 deleterious(0.01) possibly_damaging(0.784) TCGA-CN-5364-01 19 30934639 30934639 A G ZNF536 Missense_Mutation p.E57G 0.18 deleterious_low_confidence(0) benign(0.309) TCGA-CN-5364-01 19 4311994 4311994 G T FSD1 Missense_Mutation p.D216Y 0.14 deleterious(0.01) possibly_damaging(0.908) TCGA-CN-5364-01 19 51165265 51165265 C T SHANK1 Missense_Mutation p.R2148H 0.13 unknown(0) TCGA-CN-5364-01 19 56952944 56952944 C T ZNF667 Missense_Mutation p.E474K 0.16 tolerated(0.55) probably_damaging(0.996) TCGA-CN-5364-01 19 57325748 57325748 A T PEG3 Missense_Mutation p.H1354Q 0.25 deleterious(0.03) probably_damaging(0.993) TCGA-CN-5364-01 19 57723539 57723539 C T ZNF264 Silent p.L358L 0.16 TCGA-CN-5364-01 19 58212920 58212920 G A ZNF154 3'UTR 0.12 TCGA-CN-5364-01 19 6185605 6185605 C T ACSBG2 Missense_Mutation p.S494F 0.06 deleterious(0) probably_damaging(0.975) TCGA-CN-5364-01 19 7535174 7535176 TCT - ARHGEF18 In_Frame_Del p.F1173del 0.34 TCGA-CN-5364-01 1 102270141 102270141 G A OLFM3 Nonsense_Mutation p.Q344* 0.13 TCGA-CN-5364-01 1 109554265 109554265 T C WDR47 Missense_Mutation p.S142G 0.19 deleterious(0.04) benign(0.019) TCGA-CN-5364-01 1 151734860 151734860 C A MRPL9 Nonsense_Mutation p.E143* 0.20 TCGA-CN-5364-01 1 158368589 158368589 A G OR10T2 Missense_Mutation p.V223A 0.14 deleterious(0.01) benign(0.357) TCGA-CN-5364-01 1 16203019 16203019 C A SPEN Silent p.R243R 0.32 TCGA-CN-5364-01 1 165173278 165173278 C T LMX1A Splice_Site p.X330_splice 0.17 TCGA-CN-5364-01 1 171506560 171506560 G C PRRC2C Missense_Mutation p.E816Q 0.18 unknown(0) TCGA-CN-5364-01 1 176564125 176564125 C T PAPPA2 Missense_Mutation p.P462L 0.17 tolerated(0.33) benign(0.006) TCGA-CN-5364-01 1 186039757 186039757 C T HMCN1 Silent p.I2669I 0.18 TCGA-CN-5364-01 1 202724420 202724420 T A KDM5B Missense_Mutation p.Y506F 0.26 deleterious(0.01) probably_damaging(0.965) TCGA-CN-5364-01 1 223284063 223284063 C T TLR5 Missense_Mutation p.A771T 0.20 deleterious(0) probably_damaging(0.971) TCGA-CN-5364-01 1 226047034 226047035 - A TMEM63A Frame_Shift_Ins p.Q414Pfs*37 0.11 TCGA-CN-5364-01 1 231472440 231472440 C T EXOC8 Missense_Mutation p.R351K 0.17 deleterious(0) probably_damaging(0.973) TCGA-CN-5364-01 1 240493979 240493979 A T FMN2 Missense_Mutation p.N1505I 0.24 probably_damaging(0.998) TCGA-CN-5364-01 1 27427043 27427043 C A SLC9A1 Nonsense_Mutation p.E735* 0.25 TCGA-CN-5364-01 1 32739961 32739961 G A LCK Missense_Mutation p.D11N 0.12 deleterious_low_confidence(0.01) benign(0.033) TCGA-CN-5364-01 1 32740021 32740021 G T LCK Missense_Mutation p.D31Y 0.10 tolerated(0.27) benign(0.26) TCGA-CN-5364-01 1 32745441 32745441 G A LCK Splice_Site p.X348_splice 0.12 TCGA-CN-5364-01 1 42925463 42925463 T - PPCS Frame_Shift_Del p.F268Lfs*3 0.09 TCGA-CN-5364-01 1 44058140 44058140 T C PTPRF Missense_Mutation p.F561L 0.22 tolerated(0.16) benign(0.019) TCGA-CN-5364-01 1 77510090 77510090 A G ST6GALNAC5 Missense_Mutation p.N155D 0.18 benign(0.009) TCGA-CN-5364-01 1 94037258 94037258 G C BCAR3 Nonsense_Mutation p.S648* 0.16 TCGA-CN-5364-01 20 1514908 1514908 T C SIRPD 3'UTR 0.32 TCGA-CN-5364-01 20 3321254 3321254 T C C20orf194 Missense_Mutation p.N293S 0.16 tolerated(0.88) benign(0.023) TCGA-CN-5364-01 20 33876620 33876620 T C FAM83C Missense_Mutation p.M219V 0.11 tolerated(0.08) possibly_damaging(0.519) TCGA-CN-5364-01 20 34054812 34054812 G A CEP250 Missense_Mutation p.G172R 0.19 probably_damaging(1) TCGA-CN-5364-01 20 37078059 37078059 A G SNORA60 RNA 0.22 TCGA-CN-5364-01 21 37783871 37783871 A T CHAF1B Missense_Mutation p.I344L 0.22 deleterious(0.03) benign(0.21) TCGA-CN-5364-01 2 116599815 116599815 C A DPP10 Missense_Mutation p.S766Y 0.16 deleterious(0) probably_damaging(0.96) TCGA-CN-5364-01 2 128244226 128244226 C T IWS1 Missense_Mutation p.G744E 0.09 deleterious(0) probably_damaging(0.957) TCGA-CN-5364-01 2 128263073 128263073 C G IWS1 Missense_Mutation p.E136Q 0.11 tolerated_low_confidence(0.05) possibly_damaging(0.744) TCGA-CN-5364-01 2 149247786 149247786 C T MBD5 Nonsense_Mutation p.R1296* 0.12 TCGA-CN-5364-01 2 167141152 167141152 C T SCN9A Silent p.Q595Q 0.18 TCGA-CN-5364-01 2 177036256 177036256 G A HOXD3 Missense_Mutation p.E185K 0.15 tolerated(0.81) benign(0.011) TCGA-CN-5364-01 2 182765561 182765561 A G SSFA2 Missense_Mutation p.I214M 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-5364-01 2 187455218 187455218 C T ITGAV Silent p.F51F 0.22 TCGA-CN-5364-01 2 201726073 201726073 T A CLK1 Missense_Mutation p.H135L 0.23 tolerated(0.3) benign(0.001) TCGA-CN-5364-01 2 202093823 202093823 C T CASP10 3'UTR 0.23 TCGA-CN-5364-01 2 219602407 219602407 C T TTLL4 Missense_Mutation p.S3L 0.09 deleterious(0) probably_damaging(0.93) TCGA-CN-5364-01 2 228881860 228881860 G A SPHKAP Missense_Mutation p.S1237L 0.18 deleterious(0) possibly_damaging(0.907) TCGA-CN-5364-01 2 24009039 24009039 A T ATAD2B Nonsense_Mutation p.L944* 0.43 TCGA-CN-5364-01 2 48035326 48035327 - GG FBXO11 Frame_Shift_Ins p.T906Lfs*15 0.22 TCGA-CN-5364-01 2 54482044 54482044 C T TSPYL6 3'UTR 0.30 TCGA-CN-5364-01 2 80530848 80530848 G C LRRTM1 Missense_Mutation p.P33A 0.19 tolerated(0.16) benign(0.22) TCGA-CN-5364-01 3 115529219 115529219 G A LSAMP Missense_Mutation p.A321V 0.35 tolerated(0.61) unknown(0) TCGA-CN-5364-01 3 130718428 130718428 A C ATP2C1 Missense_Mutation p.I886L 0.14 tolerated(1) benign(0.014) TCGA-CN-5364-01 3 151451836 151451836 G A AADACL2 Missense_Mutation p.A5T 0.08 tolerated(1) unknown(0) TCGA-CN-5364-01 3 170198764 170198764 T C SLC7A14 Missense_Mutation p.D436G 0.14 tolerated(0.08) possibly_damaging(0.602) TCGA-CN-5364-01 3 170802049 170802049 C A TNIK Missense_Mutation p.V1022L 0.06 deleterious(0.01) probably_damaging(0.959) TCGA-CN-5364-01 3 185191117 185191117 C T MAP3K13 Silent p.C666C 0.41 TCGA-CN-5364-01 3 188590462 188590462 G T LPP Nonsense_Mutation p.E541* 0.06 TCGA-CN-5364-01 3 189526287 189526287 C T TP63 Missense_Mutation p.S184L 0.14 deleterious(0) probably_damaging(0.997) TCGA-CN-5364-01 3 50645094 50645094 G A CISH Silent p.L258L 0.37 TCGA-CN-5364-01 3 52437288 52437288 T G BAP1 Missense_Mutation p.I586L 0.30 tolerated(0.34) benign(0) TCGA-CN-5364-01 3 93714788 93714788 G A ARL13B Missense_Mutation p.E44K 0.33 deleterious(0) benign(0.108) TCGA-CN-5364-01 3 93733390 93733390 C T STX19 Missense_Mutation p.E242K 0.10 deleterious(0.03) probably_damaging(0.979) TCGA-CN-5364-01 4 105412204 105412204 G C CXXC4 Missense_Mutation p.I252M 0.19 tolerated(0.07) probably_damaging(0.974) TCGA-CN-5364-01 4 115767138 115767138 G A NDST4 Silent p.F652F 0.18 TCGA-CN-5364-01 4 122800867 122800867 C A TRPC3 3'UTR 0.05 TCGA-CN-5364-01 4 126402801 126402801 G T FAT4 Missense_Mutation p.G4242C 0.16 possibly_damaging(0.613) TCGA-CN-5364-01 4 170042098 170042098 T C SH3RF1 Silent p.E463E 0.25 TCGA-CN-5364-01 4 175710093 175710093 A G GLRA3 Silent p.L25L 0.16 TCGA-CN-5364-01 5 112173950 112173950 A T APC Missense_Mutation p.I887F 0.26 possibly_damaging(0.866) TCGA-CN-5364-01 5 112458453 112458453 G A MCC Nonsense_Mutation p.R319* 0.09 TCGA-CN-5364-01 5 127420048 127420048 A T SLC12A2 Missense_Mutation p.E134D 0.23 tolerated(0.12) benign(0.059) TCGA-CN-5364-01 5 134870804 134870804 C T NEUROG1 Missense_Mutation p.A193T 0.29 tolerated(0.57) benign(0.003) TCGA-CN-5364-01 5 140167198 140167198 G T PCDHA1 Silent p.V441V 0.06 TCGA-CN-5364-01 5 156522408 156522434 AGAGTCCCGTAAGTCATTGGCCAATCT - HAVCR2 In_Frame_Del p.R187_S195del 0.12 TCGA-CN-5364-01 5 176733257 176733258 - G MXD3 3'Flank 0.26 TCGA-CN-5364-01 5 70930987 70930987 G A MCCC2 Missense_Mutation p.E305K 0.09 tolerated_low_confidence(0.58) benign(0.021) TCGA-CN-5364-01 5 79738953 79738953 G A ZFYVE16 Missense_Mutation p.E811K 0.16 deleterious(0) probably_damaging(0.998) TCGA-CN-5364-01 6 10404781 10404781 C T TFAP2A Missense_Mutation p.E242K 0.35 deleterious(0.01) benign(0.196) TCGA-CN-5364-01 6 111214840 111214840 A C AMD1 3'UTR 0.19 TCGA-CN-5364-01 6 117630083 117630083 C A ROS1 Missense_Mutation p.G2148V 0.19 deleterious(0) probably_damaging(1) TCGA-CN-5364-01 6 134323170 134323170 G T SLC2A12 Nonsense_Mutation p.C555* 0.19 TCGA-CN-5364-01 6 143081528 143081528 G T HIVEP2 Missense_Mutation p.S1966Y 0.23 deleterious(0) possibly_damaging(0.855) TCGA-CN-5364-01 6 31778584 31778584 T C HSPA1L Missense_Mutation p.K389R 0.21 tolerated_low_confidence(0.08) benign(0.297) TCGA-CN-5364-01 6 94120846 94120846 G A EPHA7 Nonsense_Mutation p.R69* 0.24 TCGA-CN-5364-01 7 128033022 128033022 G T IMPDH1 3'UTR 0.12 TCGA-CN-5364-01 7 143658074 143658074 G A OR2F1 3'UTR 0.25 TCGA-CN-5364-01 7 2296595 2296595 C G SNX8 Missense_Mutation p.E400Q 0.11 deleterious(0) probably_damaging(0.927) TCGA-CN-5364-01 7 26779555 26779555 T C SKAP2 Silent p.Q112Q 0.17 TCGA-CN-5364-01 7 45148633 45148634 - A TBRG4 Frame_Shift_Ins p.E69Rfs*45 0.21 TCGA-CN-5364-01 7 50513222 50513222 G A FIGNL1 Silent p.L588L 0.11 TCGA-CN-5364-01 7 72420460 72420461 - C POM121 3'UTR 0.30 TCGA-CN-5364-01 7 80439970 80439970 G A SEMA3C Silent p.R165R 0.14 TCGA-CN-5364-01 7 82583457 82583457 G T PCLO Missense_Mutation p.S2271Y 0.22 unknown(0) TCGA-CN-5364-01 7 97482673 97482673 C T ASNS Missense_Mutation p.D422N 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-CN-5364-01 8 10467546 10467546 C T RP1L1 Silent p.A1354A 0.26 TCGA-CN-5364-01 8 121210093 121210093 G C COL14A1 Missense_Mutation p.L212F 0.12 deleterious(0) probably_damaging(1) TCGA-CN-5364-01 8 139696679 139696679 G T COL22A1 Missense_Mutation p.L1001I 0.16 unknown(0) TCGA-CN-5364-01 8 15998497 15998497 C A MSR1 Intron 0.17 TCGA-CN-5364-01 9 115760233 115760233 C A ZNF883 RNA 0.15 TCGA-CN-5364-01 9 125486771 125486771 C G OR1L4 Missense_Mutation p.S168C 0.06 deleterious(0) probably_damaging(0.918) TCGA-CN-5364-01 9 134010311 134010311 A G NUP214 Missense_Mutation p.I286M 0.15 unknown(0) TCGA-CN-5364-01 9 135140296 135140296 T C SETX Missense_Mutation p.Y2455C 0.33 deleterious(0) probably_damaging(1) TCGA-CN-5364-01 9 2086844 2086844 A T SMARCA2 Missense_Mutation p.M848L 0.20 benign(0.002) TCGA-CN-5364-01 9 3293119 3293119 C T RFX3 Missense_Mutation p.R230K 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-CN-5364-01 9 35403770 35403770 G A UNC13B Missense_Mutation p.E1506K 0.24 deleterious(0.01) benign(0.362) TCGA-CN-5364-01 9 5713936 5713936 G C KIAA1432 Missense_Mutation p.E125Q 0.17 tolerated(0.06) benign(0.147) TCGA-CN-5364-01 9 71396094 71396094 A G FAM122A 3'UTR 0.24 TCGA-CN-5364-01 9 86153021 86153021 C A FRMD3 Silent p.S42S 0.16 TCGA-CN-5364-01 9 8633337 8633337 G T PTPRD Missense_Mutation p.T111N 0.24 deleterious(0) probably_damaging(0.995) TCGA-CN-5364-01 X 103498950 103498950 C T ESX1 Missense_Mutation p.E131K 0.17 tolerated(0.34) possibly_damaging(0.636) TCGA-CN-5364-01 X 128881676 128881676 A G XPNPEP2 Missense_Mutation p.E195G 0.34 deleterious(0) benign(0.001) TCGA-CN-5364-01 X 63411781 63411781 T C AMER1 Silent p.E462E 0.39 TCGA-CN-5364-01 X 83599378 83599378 G C HDX Missense_Mutation p.Q514E 0.47 tolerated(0.16) probably_damaging(0.952) TCGA-CN-5364-01 X 88008565 88008565 C A CPXCR1 Missense_Mutation p.N50K 0.43 tolerated(0.1) possibly_damaging(0.859) TCGA-CN-5365-01 10 120809363 120809363 G A EIF3A Missense_Mutation p.R870W 0.27 deleterious(0) unknown(0) TCGA-CN-5365-01 10 120820798 120820798 C A EIF3A Missense_Mutation p.D389Y 0.16 deleterious(0) unknown(0) TCGA-CN-5365-01 10 124800144 124800144 G T ACADSB Nonsense_Mutation p.E156* 0.09 TCGA-CN-5365-01 10 97919954 97919954 A T ZNF518A RNA 0.20 TCGA-CN-5365-01 10 99344396 99344396 G A PI4K2A 5'UTR 0.08 TCGA-CN-5365-01 11 55594746 55594746 T C OR5L2 Missense_Mutation p.S18P 0.04 deleterious(0.05) possibly_damaging(0.878) TCGA-CN-5365-01 11 55595025 55595025 G A OR5L2 Missense_Mutation p.E111K 0.19 deleterious(0) probably_damaging(0.997) TCGA-CN-5365-01 11 56020106 56020106 T C OR5T3 Missense_Mutation p.L144P 0.32 deleterious(0) probably_damaging(0.986) TCGA-CN-5365-01 12 109698310 109698323 TGGAGCCTACATCG - ACACB Frame_Shift_Del p.A2176Rfs*3 0.25 TCGA-CN-5365-01 12 120651735 120651735 T C PXN Silent p.A487A 0.20 TCGA-CN-5365-01 12 9021749 9021749 G C A2ML1 Missense_Mutation p.V1391L 0.05 deleterious(0.01) probably_damaging(0.919) TCGA-CN-5365-01 13 108922758 108922758 G T TNFSF13B Missense_Mutation p.G137V 0.21 tolerated(0.18) benign(0.17) TCGA-CN-5365-01 13 27333678 27333678 C T GPR12 Missense_Mutation p.G96E 0.36 deleterious(0) probably_damaging(0.998) TCGA-CN-5365-01 13 67802500 67802500 C A PCDH9 Nonsense_Mutation p.E25* 0.34 TCGA-CN-5365-01 14 24884881 24884881 G A NYNRIN Missense_Mutation p.C1309Y 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CN-5365-01 14 42357171 42357171 A C LRFN5 Missense_Mutation p.Q448P 0.44 deleterious(0) probably_damaging(0.979) TCGA-CN-5365-01 14 60976178 60976178 T C SIX6 Missense_Mutation p.L21P 0.08 deleterious(0) probably_damaging(0.996) TCGA-CN-5365-01 14 64935861 64935861 T A AKAP5 Missense_Mutation p.L250H 0.58 tolerated(0.15) possibly_damaging(0.707) TCGA-CN-5365-01 15 25339217 25339217 G C SNORD116-24 RNA 0.05 TCGA-CN-5365-01 15 38786881 38786881 C - RASGRP1 Frame_Shift_Del p.G654Efs*11 0.56 TCGA-CN-5365-01 15 45047248 45047248 A G TRIM69 Missense_Mutation p.M53V 0.10 tolerated(0.13) possibly_damaging(0.579) TCGA-CN-5365-01 16 22361124 22361124 T A CDR2 Missense_Mutation p.H80L 0.30 deleterious(0) probably_damaging(0.933) TCGA-CN-5365-01 16 46717472 46717472 T C VPS35 Missense_Mutation p.D17G 0.18 tolerated(0.06) benign(0.071) TCGA-CN-5365-01 16 53515593 53515593 C T RBL2 Missense_Mutation p.P1032L 0.10 tolerated(0.14) benign(0.188) TCGA-CN-5365-01 17 1340132 1340132 C T CRK Missense_Mutation p.V187I 0.16 tolerated(0.09) possibly_damaging(0.842) TCGA-CN-5365-01 17 31324858 31324858 G A SPACA3 3'UTR 0.22 TCGA-CN-5365-01 17 33592377 33592377 G T SLFN5 Missense_Mutation p.G716C 0.26 deleterious(0) benign(0.009) TCGA-CN-5365-01 17 33679727 33679727 A G SLFN11 Missense_Mutation p.V785A 0.19 tolerated(0.07) benign(0.05) TCGA-CN-5365-01 17 37922445 37922445 G A IKZF3 Silent p.G376G 0.07 TCGA-CN-5365-01 17 56429452 56429452 G A SUPT4H1 Silent p.A15A 0.16 TCGA-CN-5365-01 17 60657496 60657496 T C TLK2 Silent p.N437N 0.21 TCGA-CN-5365-01 17 72741163 72741163 T C RAB37 Missense_Mutation p.F174S 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5365-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.57 deleterious(0) probably_damaging(1) TCGA-CN-5365-01 19 46283763 46283763 C A DMPK 5'UTR 0.35 TCGA-CN-5365-01 19 53854664 53854664 G A ZNF845 Missense_Mutation p.D246N 0.10 tolerated(0.55) benign(0.256) TCGA-CN-5365-01 19 54667422 54667422 T C TMC4 Intron 0.05 TCGA-CN-5365-01 19 56466469 56466469 C A NLRP8 Missense_Mutation p.P349T 0.07 tolerated(0.11) possibly_damaging(0.873) TCGA-CN-5365-01 19 9060492 9060492 G A MUC16 Missense_Mutation p.A8985V 0.14 unknown(0) TCGA-CN-5365-01 1 110211613 110211613 T A GSTM2 Splice_Site p.X59_splice 0.15 TCGA-CN-5365-01 1 152279679 152279679 C A FLG Missense_Mutation p.R2561S 0.28 possibly_damaging(0.69) TCGA-CN-5365-01 1 176838011 176838011 T G ASTN1 Missense_Mutation p.T1206P 0.05 deleterious(0.02) probably_damaging(0.995) TCGA-CN-5365-01 1 197070075 197070075 A C ASPM Missense_Mutation p.I2769S 0.03 tolerated(0.16) benign(0.002) TCGA-CN-5365-01 1 233388475 233388475 T G PCNXL2 Missense_Mutation p.S632R 0.04 tolerated(0.51) benign(0.001) TCGA-CN-5365-01 1 34117999 34117999 G A CSMD2 Missense_Mutation p.P1464S 0.23 deleterious(0.02) possibly_damaging(0.897) TCGA-CN-5365-01 1 66379018 66379018 G T PDE4B Silent p.V7V 0.28 TCGA-CN-5365-01 1 79385868 79385868 C G ELTD1 Missense_Mutation p.K487N 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-CN-5365-01 20 40743873 40743873 G T PTPRT Missense_Mutation p.A1022E 0.18 deleterious(0) probably_damaging(0.999) TCGA-CN-5365-01 20 62608688 62608706 AGTGGCAGGGGATGCTCTC - SAMD10 Frame_Shift_Del p.E49Cfs*57 0.37 TCGA-CN-5365-01 22 30057317 30057318 - GT NF2 Frame_Shift_Ins p.D268Vfs*29 0.44 TCGA-CN-5365-01 22 31531537 31531537 G A PLA2G3 3'UTR 0.40 TCGA-CN-5365-01 2 150426656 150426656 A T MMADHC Silent p.T241T 0.17 TCGA-CN-5365-01 2 152580789 152580789 G C NEB Silent p.T199T 0.17 TCGA-CN-5365-01 2 172309702 172309702 G T DCAF17 Silent p.G202G 0.05 TCGA-CN-5365-01 2 179974441 179974441 G A SESTD1 3'UTR 0.26 TCGA-CN-5365-01 2 201881853 201881853 C G FAM126B Missense_Mutation p.R65P 0.09 deleterious(0) probably_damaging(1) TCGA-CN-5365-01 2 232263354 232263354 C T B3GNT7 Silent p.S308S 0.45 TCGA-CN-5365-01 3 123633809 123633809 C T CCDC14 Silent p.V852V 0.18 TCGA-CN-5365-01 3 155301387 155301387 C T PLCH1 Silent p.E203E 0.38 TCGA-CN-5365-01 3 167000124 167000124 T C ZBBX Missense_Mutation p.D719G 0.10 deleterious(0.02) probably_damaging(0.965) TCGA-CN-5365-01 3 169514642 169514643 AG - LRRC34 Frame_Shift_Del p.H266Qfs*9 0.09 TCGA-CN-5365-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.13 deleterious(0.02) probably_damaging(0.959) TCGA-CN-5365-01 3 47164649 47164649 G A SETD2 Missense_Mutation p.R493W 0.06 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CN-5365-01 3 52651513 52651513 T A PBRM1 Missense_Mutation p.N528I 0.39 tolerated(0.3) probably_damaging(0.993) TCGA-CN-5365-01 3 62388773 62388773 G T CADPS Missense_Mutation p.L1289I 0.28 tolerated(0.11) benign(0.364) TCGA-CN-5365-01 4 126369690 126369690 G T FAT4 Missense_Mutation p.G2507C 0.06 probably_damaging(1) TCGA-CN-5365-01 4 164272513 164272513 C A NPY5R Missense_Mutation p.S363Y 0.12 tolerated(0.06) probably_damaging(0.997) TCGA-CN-5365-01 4 42145872 42145872 G A BEND4 Silent p.N209N 0.21 TCGA-CN-5365-01 4 69433815 69433815 C T UGT2B17 Missense_Mutation p.D130N 0.24 tolerated(0.23) benign(0.251) TCGA-CN-5365-01 5 133326807 133326807 G C VDAC1 Silent p.T52T 0.15 TCGA-CN-5365-01 5 140746136 140746136 C T PCDHGA5 Missense_Mutation p.R747W 0.27 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-CN-5365-01 5 23510109 23510109 G T PRDM9 Missense_Mutation p.D92Y 0.11 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-CN-5365-01 5 39110492 39110492 C G FYB Splice_Site p.X811_splice 0.08 TCGA-CN-5365-01 5 40854367 40854367 A T CARD6 Missense_Mutation p.Q978L 0.02 deleterious(0) benign(0.177) TCGA-CN-5365-01 5 96503521 96503521 C G RIOK2 Silent p.G349G 0.16 TCGA-CN-5365-01 6 110763885 110763885 A C SLC22A16 Missense_Mutation p.F249V 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-CN-5365-01 6 124979372 124979372 G A NKAIN2 Missense_Mutation p.R105Q 0.20 tolerated(0.12) possibly_damaging(0.832) TCGA-CN-5365-01 6 125369384 125369384 C A RNF217 Intron 0.25 TCGA-CN-5365-01 6 150210664 150210664 G T RAET1E Missense_Mutation p.L148I 0.04 deleterious(0.01) probably_damaging(0.98) TCGA-CN-5365-01 6 153316432 153316432 G A MTRF1L Missense_Mutation p.S121L 0.10 deleterious(0.04) possibly_damaging(0.574) TCGA-CN-5365-01 6 26217186 26217186 G C HIST1H2AE 5'UTR 0.14 TCGA-CN-5365-01 6 29141542 29141542 C G OR2J2 Missense_Mutation p.L44V 0.15 tolerated(0.28) benign(0.02) TCGA-CN-5365-01 6 2953378 2953378 A C SERPINB6 Missense_Mutation p.L158W 0.07 tolerated(0.16) benign(0.053) TCGA-CN-5365-01 6 30140255 30140255 C G TRIM15 3'UTR 0.11 TCGA-CN-5365-01 6 30954441 30954441 C T MUC21 Silent p.S163S 0.19 TCGA-CN-5365-01 6 30954455 30954455 C G MUC21 Missense_Mutation p.S168C 0.17 deleterious(0.01) unknown(0) TCGA-CN-5365-01 6 31731931 31731931 G A SAPCD1 Missense_Mutation p.E116K 0.11 tolerated(0.55) benign(0.007) TCGA-CN-5365-01 6 46787263 46787263 A C MEP1A Intron 0.30 TCGA-CN-5365-01 6 46802421 46802421 C G MEP1A Silent p.S572S 0.03 TCGA-CN-5365-01 6 93955046 93955046 G T EPHA7 Missense_Mutation p.S951Y 0.06 tolerated(0.17) benign(0.003) TCGA-CN-5365-01 7 11464388 11464388 G A THSD7A Silent p.I1106I 0.13 TCGA-CN-5365-01 7 155093339 155093339 G C INSIG1 Missense_Mutation p.R159T 0.28 deleterious(0.02) probably_damaging(0.946) TCGA-CN-5365-01 7 35144316 35144316 C T DPY19L2P1 RNA 0.12 TCGA-CN-5365-01 7 83590840 83590840 G A SEMA3A Silent p.F721F 0.08 TCGA-CN-5365-01 7 86394556 86394556 A G GRM3 Missense_Mutation p.E32G 0.03 tolerated(0.13) possibly_damaging(0.787) TCGA-CN-5365-01 8 37823588 37823588 C A ADRB3 Missense_Mutation p.D134Y 0.42 deleterious(0) probably_damaging(1) TCGA-CN-5365-01 8 99468078 99468078 T G STK3 Missense_Mutation p.N518H 0.10 deleterious_low_confidence(0.03) benign(0.349) TCGA-CN-5365-01 9 139413947 139413947 G A NOTCH1 Silent p.A271A 0.24 TCGA-CN-5365-01 9 140361788 140361788 C T PNPLA7 Missense_Mutation p.R1007Q 0.31 deleterious(0.01) benign(0.366) TCGA-CN-5365-01 X 123587207 123587207 A G TENM1 Missense_Mutation p.S1362P 0.04 tolerated(0.07) benign(0.323) TCGA-CN-5365-01 X 37029320 37029320 A T FAM47C Missense_Mutation p.K946M 0.48 deleterious(0.04) benign(0.39) TCGA-CN-5365-01 X 49049871 49049871 G A SYP Missense_Mutation p.S158L 0.48 deleterious(0.03) possibly_damaging(0.716) TCGA-CN-5366-01 10 100202886 100202886 C T HPS1 Missense_Mutation p.E38K 0.21 tolerated(0.19) possibly_damaging(0.702) TCGA-CN-5366-01 10 127412503 127412503 C T EDRF1 Nonsense_Mutation p.Q170* 0.14 TCGA-CN-5366-01 10 61840373 61840373 C G ANK3 Missense_Mutation p.E1452Q 0.18 possibly_damaging(0.787) TCGA-CN-5366-01 10 68688015 68688015 G C LRRTM3 Silent p.A447A 0.13 TCGA-CN-5366-01 10 72298066 72298066 C T PALD1 Missense_Mutation p.R452C 0.08 deleterious(0.01) possibly_damaging(0.761) TCGA-CN-5366-01 11 27148982 27148982 G T BBOX1 Missense_Mutation p.R382S 0.04 tolerated(0.93) benign(0) TCGA-CN-5366-01 11 33772131 33772131 G C FBXO3 Missense_Mutation p.L296V 0.07 tolerated(0.07) possibly_damaging(0.833) TCGA-CN-5366-01 11 4790981 4790981 C G OR51F1 Missense_Mutation p.S56T 0.14 tolerated(0.07) benign(0.053) TCGA-CN-5366-01 11 5776889 5776889 A T OR52N4 Missense_Mutation p.I307L 0.28 tolerated(1) benign(0.001) TCGA-CN-5366-01 11 65792843 65792843 G A CATSPER1 Silent p.H336H 0.13 TCGA-CN-5366-01 11 71185569 71185569 C T NADSYN1 Silent p.D265D 0.06 TCGA-CN-5366-01 11 73717337 73717337 C G UCP3 Missense_Mutation p.E72Q 0.23 deleterious(0.02) possibly_damaging(0.89) TCGA-CN-5366-01 12 104067694 104067694 G A STAB2 Missense_Mutation p.C794Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-CN-5366-01 12 25308247 25308247 G A CASC1 Nonsense_Mutation p.Q100* 0.17 TCGA-CN-5366-01 12 52994829 52994829 G A KRT72 Silent p.F136F 0.19 TCGA-CN-5366-01 12 54795429 54795429 T A ITGA5 Missense_Mutation p.Q776L 0.23 tolerated(0.32) benign(0.338) TCGA-CN-5366-01 12 57106906 57106906 G C NACA Silent p.V860V 0.13 TCGA-CN-5366-01 12 62996648 62996648 G A C12orf61 3'UTR 0.08 TCGA-CN-5366-01 12 7527092 7527092 C T CD163L1 Missense_Mutation p.G1119S 0.15 deleterious(0.04) probably_damaging(0.98) TCGA-CN-5366-01 12 85680722 85680722 A C ALX1 Missense_Mutation p.D208A 0.27 deleterious(0.01) benign(0.171) TCGA-CN-5366-01 13 114285981 114285981 T C TFDP1 Missense_Mutation p.V77A 0.22 deleterious(0.04) benign(0.097) TCGA-CN-5366-01 13 32950826 32950826 T A BRCA2 Nonsense_Mutation p.Y2884* 0.20 TCGA-CN-5366-01 14 106110876 106110876 G A IGHG2 Silent p.N84N 0.29 TCGA-CN-5366-01 14 106877875 106877875 G T IGHV4-39 Missense_Mutation p.P40H 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-CN-5366-01 14 107283035 107283035 T G IGHV7-81 Silent p.S36S 0.27 TCGA-CN-5366-01 14 51228570 51228570 C G NIN Missense_Mutation p.E612Q 0.14 deleterious(0) possibly_damaging(0.731) TCGA-CN-5366-01 14 81670382 81670382 G C GTF2A1 Missense_Mutation p.L67V 0.26 tolerated(0.06) benign(0.031) TCGA-CN-5366-01 14 99879261 99879261 A C SETD3 Intron 0.30 TCGA-CN-5366-01 15 22383148 22383148 C T OR4N4 Missense_Mutation p.R226C 0.07 deleterious(0.02) benign(0.005) TCGA-CN-5366-01 15 25223367 25223367 G C SNRPN Missense_Mutation p.R196T 0.08 deleterious(0.04) unknown(0) TCGA-CN-5366-01 15 75645964 75645964 C T NEIL1 Intron 0.12 TCGA-CN-5366-01 15 75704051 75704051 G T SIN3A Missense_Mutation p.Q264K 0.22 tolerated(0.31) benign(0.297) TCGA-CN-5366-01 16 30977267 30977267 C T SETD1A Missense_Mutation p.R689W 0.22 benign(0.428) TCGA-CN-5366-01 16 68021883 68021883 G A DPEP2 Nonsense_Mutation p.Q360* 0.20 TCGA-CN-5366-01 16 71710362 71710363 - A PHLPP2 Frame_Shift_Ins p.A487Cfs*33 0.17 TCGA-CN-5366-01 16 90015872 90015872 G A DEF8 5'UTR 0.19 TCGA-CN-5366-01 17 10206726 10206726 C A MYH13 Missense_Mutation p.K1852N 0.11 deleterious(0) probably_damaging(0.997) TCGA-CN-5366-01 17 26885585 26885585 C A PIGS Silent p.G281G 0.28 TCGA-CN-5366-01 17 27414043 27414043 G A MYO18A Missense_Mutation p.R1875W 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-CN-5366-01 17 30380377 30380377 A T LRRC37B 3'UTR 0.23 TCGA-CN-5366-01 17 32964713 32964713 G A TMEM132E Missense_Mutation p.G806D 0.13 deleterious(0) probably_damaging(1) TCGA-CN-5366-01 17 43516996 43516996 G C PLEKHM1 Missense_Mutation p.A969G 0.26 deleterious(0.01) possibly_damaging(0.625) TCGA-CN-5366-01 17 45695767 45695768 - TTG NPEPPS In_Frame_Ins p.L783_G784insV 0.12 TCGA-CN-5366-01 17 7324583 7324583 G A SPEM1 Missense_Mutation p.E197K 0.05 tolerated(0.09) benign(0.001) TCGA-CN-5366-01 17 7578413 7578413 C T TP53 Missense_Mutation p.V173M 0.36 deleterious(0.02) probably_damaging(1) TCGA-CN-5366-01 17 7591902 7591902 C T WRAP53 5'UTR 0.11 TCGA-CN-5366-01 18 42533185 42533185 G C SETBP1 Missense_Mutation p.D1294H 0.14 deleterious(0) possibly_damaging(0.855) TCGA-CN-5366-01 19 17305984 17305984 C T MYO9B Missense_Mutation p.R1250W 0.28 deleterious(0) probably_damaging(1) TCGA-CN-5366-01 19 21606315 21606315 T G ZNF493 Missense_Mutation p.L285R 0.20 tolerated(1) benign(0.006) TCGA-CN-5366-01 19 21606339 21606339 A G ZNF493 Missense_Mutation p.Y293C 0.17 deleterious(0.03) probably_damaging(1) TCGA-CN-5366-01 19 21719595 21719595 A G ZNF429 Missense_Mutation p.H247R 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-CN-5366-01 19 21910043 21910043 G A ZNF100 Silent p.S357S 0.09 TCGA-CN-5366-01 19 2834412 2834412 A T ZNF554 Silent p.S393S 0.17 TCGA-CN-5366-01 19 43708353 43708353 C T PSG4 Missense_Mutation p.E39K 0.10 deleterious(0) probably_damaging(0.998) TCGA-CN-5366-01 19 44471151 44471151 C A ZNF221 Silent p.L499L 0.20 TCGA-CN-5366-01 19 52272532 52272532 C TT FPR2 Frame_Shift_Ins p.I208Yfs*4 0.22 TCGA-CN-5366-01 19 54664984 54664984 G A TMC4 Missense_Mutation p.S573F 0.17 tolerated(0.69) benign(0.023) TCGA-CN-5366-01 19 54803127 54803127 C T LILRA3 Missense_Mutation p.V184M 0.49 tolerated(0.07) possibly_damaging(0.782) TCGA-CN-5366-01 19 8387792 8387792 A T KANK3 Silent p.P799P 0.05 TCGA-CN-5366-01 1 110709633 110709633 G A SLC6A17 Missense_Mutation p.E28K 0.28 tolerated(0.15) possibly_damaging(0.797) TCGA-CN-5366-01 1 114680442 114680442 C T SYT6 Missense_Mutation p.R164H 0.11 deleterious(0.03) possibly_damaging(0.791) TCGA-CN-5366-01 1 11985515 11985515 G A KIAA2013 Silent p.H260H 0.18 TCGA-CN-5366-01 1 147096054 147096054 T C BCL9 Missense_Mutation p.L1192P 0.07 deleterious(0) probably_damaging(0.994) TCGA-CN-5366-01 1 154303598 154303598 T A ATP8B2 Silent p.A126A 0.26 TCGA-CN-5366-01 1 171956930 171956930 G T DNM3 Missense_Mutation p.V124F 0.07 deleterious(0) probably_damaging(0.99) TCGA-CN-5366-01 1 216496972 216496972 G A USH2A Missense_Mutation p.P465L 0.08 probably_damaging(0.998) TCGA-CN-5366-01 1 22141157 22141157 G A LDLRAD2 Missense_Mutation p.G118S 0.17 deleterious(0) probably_damaging(0.999) TCGA-CN-5366-01 1 248028043 248028043 G C TRIM58 Missense_Mutation p.E185Q 0.16 deleterious(0) possibly_damaging(0.829) TCGA-CN-5366-01 1 29475301 29475301 C T SRSF4 Missense_Mutation p.R369H 0.09 tolerated_low_confidence(0.16) unknown(0) TCGA-CN-5366-01 1 40434298 40434298 G A MFSD2A Silent p.L483L 0.22 TCGA-CN-5366-01 1 77588033 77588033 T C PIGK Missense_Mutation p.D333G 0.21 tolerated(0.24) benign(0.001) TCGA-CN-5366-01 1 89325684 89325684 T C GTF2B Missense_Mutation p.N139S 0.12 tolerated(0.1) benign(0.096) TCGA-CN-5366-01 1 94033309 94033310 - CA BCAR3 Frame_Shift_Ins p.H692Cfs*20 0.29 TCGA-CN-5366-01 20 23667796 23667796 G A CST4 Missense_Mutation p.R91C 0.10 deleterious(0) probably_damaging(1) TCGA-CN-5366-01 21 44513089 44513089 T C U2AF1 3'UTR 0.17 TCGA-CN-5366-01 22 24982183 24982183 G A FAM211B Silent p.L207L 0.22 TCGA-CN-5366-01 22 39411612 39411612 G A APOBEC3C Silent p.K10K 0.10 TCGA-CN-5366-01 2 11780421 11780421 G A GREB1 Silent p.A1897A 0.26 TCGA-CN-5366-01 2 165551002 165551002 T A COBLL1 Missense_Mutation p.N1005I 0.12 deleterious(0) probably_damaging(0.966) TCGA-CN-5366-01 2 172952988 172952988 T - DLX1 3'UTR 0.09 TCGA-CN-5366-01 2 173686633 173686633 A G RAPGEF4 Intron 0.20 TCGA-CN-5366-01 2 20141576 20141576 T C WDR35 Missense_Mutation p.I635V 0.16 deleterious(0.04) probably_damaging(0.926) TCGA-CN-5366-01 2 42671599 42671599 G C KCNG3 Missense_Mutation p.I262M 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-5366-01 2 74730020 74730020 G T LBX2 5'UTR 0.06 TCGA-CN-5366-01 2 89156981 89156981 T C IGKC Missense_Mutation p.T73A 0.13 deleterious(0.03) benign(0.218) TCGA-CN-5366-01 3 126255198 126255198 T C CHST13 Splice_Site p.X60_splice 0.21 TCGA-CN-5366-01 3 164059179 164059179 G C MIR720 RNA 0.31 TCGA-CN-5366-01 3 164907436 164907436 G A SLITRK3 Nonsense_Mutation p.R395* 0.19 TCGA-CN-5366-01 3 183855951 183855951 C T EIF2B5 Intron 0.14 TCGA-CN-5366-01 3 47286984 47287007 ACTTCCTGTTCCTGTTGGCTTGGG - KIF9 Splice_Site p.X430_splice 0.23 TCGA-CN-5366-01 3 73440206 73440206 G A PDZRN3 Missense_Mutation p.T439M 0.09 deleterious(0.04) possibly_damaging(0.656) TCGA-CN-5366-01 4 106156862 106156862 C A TET2 Nonsense_Mutation p.S588* 0.27 TCGA-CN-5366-01 4 115997944 115997944 G A NDST4 Silent p.F83F 0.11 TCGA-CN-5366-01 4 119035975 119035975 G A NDST3 Missense_Mutation p.D362N 0.13 tolerated(0.24) probably_damaging(0.929) TCGA-CN-5366-01 4 153247175 153247175 T C FBXW7 Missense_Mutation p.R543G 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-CN-5366-01 4 187541516 187541516 T - FAT1 Frame_Shift_Del p.N2075Mfs*32 0.31 TCGA-CN-5366-01 4 57269492 57269492 G A PPAT Missense_Mutation p.P160S 0.20 tolerated(0.14) possibly_damaging(0.541) TCGA-CN-5366-01 5 121187858 121187858 G A FTMT Missense_Mutation p.R67Q 0.15 tolerated(1) benign(0) TCGA-CN-5366-01 5 13883148 13883148 G A DNAH5 Silent p.S1013S 0.35 TCGA-CN-5366-01 5 140723931 140723931 G A PCDHGA3 Missense_Mutation p.E111K 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.868) TCGA-CN-5366-01 5 150946563 150946563 C T FAT2 Missense_Mutation p.D644N 0.22 probably_damaging(1) TCGA-CN-5366-01 5 179688706 179688706 T A MAPK9 Missense_Mutation p.H143L 0.23 deleterious(0) probably_damaging(0.998) TCGA-CN-5366-01 5 39202059 39202059 C A FYB Missense_Mutation p.G345V 0.07 deleterious(0.02) possibly_damaging(0.448) TCGA-CN-5366-01 5 39202060 39202060 C G FYB Missense_Mutation p.G345R 0.08 tolerated(0.11) possibly_damaging(0.448) TCGA-CN-5366-01 5 40958326 40958326 G A C7 Silent p.A484A 0.11 TCGA-CN-5366-01 5 86674262 86674264 GGA - RASA1 In_Frame_Del p.E799del 0.28 TCGA-CN-5366-01 6 139563752 139563752 G A TXLNB Nonsense_Mutation p.R656* 0.31 TCGA-CN-5366-01 6 169632834 169632834 G A THBS2 Silent p.C619C 0.22 TCGA-CN-5366-01 6 75829169 75829169 G A COL12A1 Silent p.S2369S 0.22 TCGA-CN-5366-01 7 107399644 107399644 G A CBLL1 3'UTR 0.20 TCGA-CN-5366-01 7 113558424 113558424 G A PPP1R3A Missense_Mutation p.R210C 0.16 deleterious(0) probably_damaging(0.984) TCGA-CN-5366-01 7 121676716 121676716 A G PTPRZ1 Missense_Mutation p.I1783V 0.27 deleterious(0.01) possibly_damaging(0.492) TCGA-CN-5366-01 7 126410117 126410117 G A GRM8 Silent p.L387L 0.34 TCGA-CN-5366-01 7 158560437 158560437 T C ESYT2 Missense_Mutation p.I326V 0.12 tolerated(0.11) benign(0.011) TCGA-CN-5366-01 7 18767227 18767227 C T HDAC9 Missense_Mutation p.R586C 0.33 deleterious(0.01) benign(0.002) TCGA-CN-5366-01 7 5105050 5105050 G A RBAK Missense_Mutation p.E655K 0.18 deleterious(0) possibly_damaging(0.641) TCGA-CN-5366-01 7 76019258 76019258 C T SRCRB4D 3'UTR 0.13 TCGA-CN-5366-01 7 94052391 94052391 C T COL1A2 Silent p.F842F 0.15 TCGA-CN-5366-01 8 144130635 144130635 G A C8orf31 Missense_Mutation p.R122Q 0.13 deleterious_low_confidence(0) benign(0.417) TCGA-CN-5366-01 8 144940258 144940258 G A EPPK1 Silent p.D2388D 0.04 TCGA-CN-5366-01 8 69621297 69621297 A T C8orf34 Missense_Mutation p.K437I 0.31 tolerated(0.25) benign(0.001) TCGA-CN-5366-01 8 77616422 77616422 G C ZFHX4 Missense_Mutation p.E33D 0.17 benign(0.388) TCGA-CN-5366-01 9 120466838 120466838 G A TLR4 Missense_Mutation p.V30M 0.34 deleterious(0.03) benign(0.055) TCGA-CN-5366-01 9 19058811 19058811 G T HAUS6 Missense_Mutation p.H652N 0.30 tolerated(0.32) benign(0.06) TCGA-CN-5366-01 X 105153047 105153047 C T NRK Missense_Mutation p.R473W 0.28 tolerated_low_confidence(0.06) benign(0.003) TCGA-CN-5366-01 X 21609140 21609140 G T CNKSR2 Missense_Mutation p.G553V 0.34 deleterious(0) benign(0.041) TCGA-CN-5366-01 X 29417342 29417342 G T IL1RAPL1 Missense_Mutation p.R207I 0.39 tolerated(0.06) benign(0.361) TCGA-CN-5366-01 X 73962241 73962241 G C KIAA2022 Silent p.L717L 0.04 TCGA-CN-5366-01 Y 15025642 15025642 G A DDX3Y Missense_Mutation p.D184N 0.17 tolerated(0.16) benign(0.001) TCGA-CN-5367-01 10 17061945 17061945 C T CUBN Missense_Mutation p.G1352E 0.17 deleterious(0) probably_damaging(1) TCGA-CN-5367-01 10 88227232 88227232 T C WAPAL Missense_Mutation p.Y725C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-5367-01 10 95287808 95287808 T C CEP55 Silent p.A431A 0.26 TCGA-CN-5367-01 11 105782630 105782630 A G GRIA4 Intron 0.05 TCGA-CN-5367-01 11 106681089 106681089 G C GUCY1A2 Nonsense_Mutation p.S441* 0.11 TCGA-CN-5367-01 11 106681158 106681158 G T GUCY1A2 Missense_Mutation p.S418Y 0.09 deleterious(0) possibly_damaging(0.873) TCGA-CN-5367-01 11 117695379 117695379 C T FXYD2 Silent p.S5S 0.31 TCGA-CN-5367-01 11 1274140 1274140 C G MUC5B Missense_Mutation p.C5049W 0.15 unknown(0) TCGA-CN-5367-01 11 14853185 14853185 G C PDE3B Splice_Site p.X653_splice 0.34 TCGA-CN-5367-01 11 28119518 28119518 T A KIF18A 5'UTR 0.06 TCGA-CN-5367-01 11 49597984 49597984 C G RP11-707M1.1 RNA 0.26 TCGA-CN-5367-01 11 61097015 61097015 G T DDB1 Silent p.I123I 0.39 TCGA-CN-5367-01 11 65303563 65303563 C T SCYL1 Missense_Mutation p.P509L 0.34 deleterious(0) probably_damaging(1) TCGA-CN-5367-01 11 67811734 67811734 C T TCIRG1 Missense_Mutation p.H315Y 0.11 deleterious(0.01) benign(0.008) TCGA-CN-5367-01 11 7960501 7960501 A G OR10A3 Silent p.C189C 0.05 TCGA-CN-5367-01 12 15668508 15668508 G A PTPRO Missense_Mutation p.G514D 0.22 deleterious(0.01) probably_damaging(0.946) TCGA-CN-5367-01 12 54576179 54576179 G A SMUG1 Missense_Mutation p.P172S 0.05 tolerated(0.45) benign(0.153) TCGA-CN-5367-01 12 6094236 6094236 G C VWF Missense_Mutation p.D2317E 0.20 tolerated(0.33) benign(0.036) TCGA-CN-5367-01 12 89984614 89984614 A T ATP2B1 3'UTR 0.27 TCGA-CN-5367-01 12 91449227 91449227 G T KERA Missense_Mutation p.P278T 0.24 deleterious(0) probably_damaging(0.998) TCGA-CN-5367-01 12 91558464 91558464 G - DCN Frame_Shift_Del p.P81Lfs*6 0.14 TCGA-CN-5367-01 13 113460594 113460594 C T ATP11A Missense_Mutation p.T107M 0.18 deleterious(0) probably_damaging(1) TCGA-CN-5367-01 13 20641120 20641120 C G ZMYM2 Missense_Mutation p.L1088V 0.06 tolerated(0.28) benign(0.113) TCGA-CN-5367-01 13 67800747 67800747 A G PCDH9 Missense_Mutation p.L609P 0.08 deleterious(0) probably_damaging(1) TCGA-CN-5367-01 14 102548742 102548742 T C HSP90AA1 Missense_Mutation p.I721V 0.14 tolerated_low_confidence(0.11) unknown(0) TCGA-CN-5367-01 14 39871062 39871078 AATTCTATAAGGAAAAC - FBXO33 Splice_Site p.X237_splice 0.34 TCGA-CN-5367-01 14 67671509 67671509 G A FAM71D Silent p.V205V 0.20 TCGA-CN-5367-01 14 95670064 95670064 T A CLMN Missense_Mutation p.K541M 0.07 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-CN-5367-01 14 99871539 99871539 T C SETD3 Intron 0.39 TCGA-CN-5367-01 15 65864618 65864618 G A PTPLAD1 Missense_Mutation p.R309Q 0.08 tolerated(0.09) possibly_damaging(0.605) TCGA-CN-5367-01 16 65016076 65016076 A G CDH11 Silent p.D376D 0.08 TCGA-CN-5367-01 16 67265094 67265094 G A FHOD1 Silent p.A888A 0.13 TCGA-CN-5367-01 16 71319616 71319616 G C CMTR2 Missense_Mutation p.L70V 0.18 deleterious(0) possibly_damaging(0.899) TCGA-CN-5367-01 16 7568364 7568364 C T RBFOX1 Silent p.S101S 0.21 TCGA-CN-5367-01 16 80583408 80583408 A G DYNLRB2 Missense_Mutation p.N36S 0.21 tolerated(0.11) benign(0.146) TCGA-CN-5367-01 17 34893088 34893088 G A PIGW Silent p.L46L 0.03 TCGA-CN-5367-01 17 38350155 38350155 C T RAPGEFL1 3'UTR 0.42 TCGA-CN-5367-01 17 40706634 40706634 G C HSD17B1 Intron 0.20 TCGA-CN-5367-01 17 74563605 74563605 T C ST6GALNAC2 Missense_Mutation p.H296R 0.19 benign(0) TCGA-CN-5367-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.19 deleterious(0) probably_damaging(0.998) TCGA-CN-5367-01 17 7578449 7578449 C T TP53 Missense_Mutation p.A161T 0.20 deleterious(0) probably_damaging(1) TCGA-CN-5367-01 17 8808132 8808132 T C PIK3R5 Missense_Mutation p.E125G 0.32 tolerated(0.08) benign(0.049) TCGA-CN-5367-01 18 12493083 12493083 G A SPIRE1 Missense_Mutation p.R393C 0.34 deleterious(0.01) possibly_damaging(0.84) TCGA-CN-5367-01 18 3067467 3067467 G C MYOM1 Missense_Mutation p.D1617E 0.96 tolerated(0.66) benign(0.004) TCGA-CN-5367-01 18 76754699 76754699 A G SALL3 Missense_Mutation p.Q903R 0.33 tolerated(0.17) benign(0.013) TCGA-CN-5367-01 19 18322001 18322001 G A PDE4C Missense_Mutation p.T626M 0.06 deleterious(0.02) probably_damaging(1) TCGA-CN-5367-01 19 31040060 31040060 C T ZNF536 Silent p.N1178N 0.25 TCGA-CN-5367-01 19 38882740 38882740 C A SPRED3 Missense_Mutation p.A111D 0.28 tolerated(0.15) possibly_damaging(0.763) TCGA-CN-5367-01 19 54242645 54242645 G A MIR518A2 RNA 0.09 TCGA-CN-5367-01 19 57027646 57027646 C G ZNF471 Missense_Mutation p.D12E 0.24 tolerated(0.67) possibly_damaging(0.739) TCGA-CN-5367-01 1 11766452 11766452 G A DRAXIN Missense_Mutation p.G46D 0.23 tolerated(0.13) benign(0.015) TCGA-CN-5367-01 1 145535818 145535818 G A ITGA10 Missense_Mutation p.R669Q 0.14 tolerated(0.09) benign(0.041) TCGA-CN-5367-01 1 152193084 152193084 C G HRNR Missense_Mutation p.G341R 0.08 unknown(0) TCGA-CN-5367-01 1 156876577 156876577 T A PEAR1 Nonsense_Mutation p.Y183* 0.09 TCGA-CN-5367-01 1 15752368 15752368 T G EFHD2 Missense_Mutation p.Y104D 0.09 deleterious(0) probably_damaging(0.977) TCGA-CN-5367-01 1 245250645 245250645 G C EFCAB2 Missense_Mutation p.V158L 0.10 tolerated(0.35) benign(0.012) TCGA-CN-5367-01 1 36316594 36316594 A G AGO4 Missense_Mutation p.Y806C 0.10 deleterious(0) probably_damaging(0.999) TCGA-CN-5367-01 1 36564363 36564363 G A COL8A2 Missense_Mutation p.P307S 0.44 deleterious(0.04) unknown(0) TCGA-CN-5367-01 1 61921053 61921053 A G NFIA 3'UTR 0.09 TCGA-CN-5367-01 1 92752126 92752126 G T GLMN Missense_Mutation p.P219H 0.04 deleterious(0) probably_damaging(1) TCGA-CN-5367-01 20 14306474 14306474 G A FLRT3 Missense_Mutation p.S560L 0.33 deleterious(0.01) possibly_damaging(0.492) TCGA-CN-5367-01 20 21143678 21143678 C A RP4-777D9.2 Intron 0.32 TCGA-CN-5367-01 20 25276260 25276260 A G PYGB Missense_Mutation p.Y778C 0.20 deleterious(0) probably_damaging(0.998) TCGA-CN-5367-01 20 50140011 50140011 C T NFATC2 Missense_Mutation p.A257T 0.19 tolerated(0.42) benign(0.053) TCGA-CN-5367-01 20 61510637 61510637 G C DIDO1 Missense_Mutation p.P2224R 0.18 benign(0) TCGA-CN-5367-01 20 61834905 61834905 G C YTHDF1 Missense_Mutation p.F129L 0.28 deleterious(0) probably_damaging(0.998) TCGA-CN-5367-01 20 9388620 9388620 T C PLCB4 Silent p.G556G 0.26 TCGA-CN-5367-01 21 46011993 46011993 A C KRTAP10-6 Missense_Mutation p.C125G 0.09 deleterious(0) unknown(0) TCGA-CN-5367-01 2 128046972 128046972 T C ERCC3 Missense_Mutation p.M255V 0.22 tolerated(0.72) benign(0.039) TCGA-CN-5367-01 2 133538710 133538710 A G NCKAP5 Missense_Mutation p.L1655P 0.15 deleterious(0.04) possibly_damaging(0.862) TCGA-CN-5367-01 2 161052924 161052924 G A ITGB6 Missense_Mutation p.T50I 0.29 tolerated(0.09) probably_damaging(0.998) TCGA-CN-5367-01 2 173352098 173352098 G A ITGA6 Missense_Mutation p.D693N 0.30 deleterious(0.05) possibly_damaging(0.46) TCGA-CN-5367-01 2 179582331 179582331 G T TTN Missense_Mutation p.Q8424K 0.25 TCGA-CN-5367-01 2 223161786 223161786 C T PAX3 Missense_Mutation p.V78M 0.07 deleterious(0) probably_damaging(1) TCGA-CN-5367-01 2 27600905 27600907 TGC GG ZNF513 Frame_Shift_Del p.H378Pfs*2 0.13 TCGA-CN-5367-01 2 38178430 38178430 T C RMDN2 Silent p.S24S 0.07 TCGA-CN-5367-01 2 73678468 73678468 A - ALMS1 Frame_Shift_Del p.K1606Rfs*9 0.08 TCGA-CN-5367-01 2 90154202 90154202 A T IGKV3D-15 Missense_Mutation p.S97C 0.20 deleterious(0.01) benign(0.076) TCGA-CN-5367-01 3 121200622 121200622 G A POLQ Missense_Mutation p.P2003L 0.12 tolerated(0.11) possibly_damaging(0.866) TCGA-CN-5367-01 3 133486976 133486976 A G TF Silent p.K530K 0.14 TCGA-CN-5367-01 3 182759449 182759449 A C MCCC1 Silent p.P391P 0.05 TCGA-CN-5367-01 3 183773130 183773130 C G HTR3C Missense_Mutation p.L89V 0.16 deleterious(0.02) benign(0.268) TCGA-CN-5367-01 3 51746779 51746779 C T GRM2 Silent p.R247R 0.07 TCGA-CN-5367-01 3 67546294 67546294 G T SUCLG2 Missense_Mutation p.F330L 0.34 deleterious(0) probably_damaging(1) TCGA-CN-5367-01 3 77695249 77695249 G A ROBO2 3'UTR 0.40 TCGA-CN-5367-01 3 88189025 88189025 G C ZNF654 Missense_Mutation p.D189H 0.32 deleterious(0.01) possibly_damaging(0.633) TCGA-CN-5367-01 3 97888223 97888223 A T OR5H15 Missense_Mutation p.E227V 0.05 deleterious(0) benign(0.04) TCGA-CN-5367-01 4 139964425 139964425 G A CCRN4L Missense_Mutation p.V130M 0.20 deleterious(0.03) benign(0.062) TCGA-CN-5367-01 4 142147942 142147942 A C ZNF330 Missense_Mutation p.K78T 0.14 deleterious(0) probably_damaging(0.968) TCGA-CN-5367-01 4 17583958 17583958 A G LAP3 Silent p.G107G 0.10 TCGA-CN-5367-01 4 66197778 66197778 A T EPHA5 Missense_Mutation p.L974Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-CN-5367-01 4 6925212 6925212 C T TBC1D14 Silent p.H32H 0.07 TCGA-CN-5367-01 5 134724631 134724631 G A H2AFY Silent p.A51A 0.19 TCGA-CN-5367-01 5 140573845 140573845 G T PCDHB10 Nonsense_Mutation p.E574* 0.14 TCGA-CN-5367-01 5 140755360 140755360 C T PCDHGA6 Silent p.D570D 0.22 TCGA-CN-5367-01 5 154179561 154179561 G T LARP1 Nonsense_Mutation p.E482* 0.26 TCGA-CN-5367-01 6 110037703 110037703 A G FIG4 Missense_Mutation p.N74S 0.20 deleterious(0.01) possibly_damaging(0.574) TCGA-CN-5367-01 6 111689218 111689218 G A REV3L Missense_Mutation p.R1925W 0.20 deleterious(0) probably_damaging(0.912) TCGA-CN-5367-01 6 142525136 142525136 A G VTA1 Missense_Mutation p.T238A 0.14 tolerated(0.68) benign(0.003) TCGA-CN-5367-01 6 27101004 27101004 C T HIST1H2AG Silent p.L52L 0.20 TCGA-CN-5367-01 6 27792103 27792103 C T HIST1H4J Silent p.I67I 0.13 TCGA-CN-5367-01 6 28227211 28227211 G A NKAPL Missense_Mutation p.R21H 0.06 tolerated(0.14) unknown(0) TCGA-CN-5367-01 6 28294189 28294189 G A ZSCAN31 Silent p.C325C 0.06 TCGA-CN-5367-01 6 47471022 47471022 A G CD2AP Missense_Mutation p.Y4C 0.23 deleterious(0.03) possibly_damaging(0.75) TCGA-CN-5367-01 6 72011631 72011631 C T OGFRL1 Missense_Mutation p.T412I 0.34 tolerated_low_confidence(0.2) benign(0.017) TCGA-CN-5367-01 6 93982120 93982120 C A EPHA7 Missense_Mutation p.V449L 0.05 tolerated(0.22) benign(0.005) TCGA-CN-5367-01 7 100876196 100876196 C A CLDN15 Splice_Site p.X128_splice 0.11 TCGA-CN-5367-01 7 101256788 101256788 G C MYL10 Missense_Mutation p.C216W 0.04 deleterious(0) probably_damaging(0.99) TCGA-CN-5367-01 7 121942225 121942225 A G FEZF1 Silent p.H418H 0.07 TCGA-CN-5367-01 7 133682355 133682355 C T EXOC4 Missense_Mutation p.R773C 0.22 deleterious(0.05) benign(0.109) TCGA-CN-5367-01 7 138827003 138827003 T C TTC26 Silent p.A117A 0.27 TCGA-CN-5367-01 7 141708357 141708357 C G MGAM Missense_Mutation p.P60R 0.26 tolerated(0.2) benign(0.007) TCGA-CN-5367-01 7 21747448 21747448 T C DNAH11 Silent p.D2233D 0.34 TCGA-CN-5367-01 7 4839000 4839000 G A RADIL 3'UTR 0.21 TCGA-CN-5367-01 7 82582565 82582565 A C PCLO Silent p.S2568S 0.28 TCGA-CN-5367-01 8 145095694 145095694 C A SPATC1 Missense_Mutation p.T331K 0.29 tolerated(0.1) benign(0.355) TCGA-CN-5367-01 8 48868498 48868498 G A PRKDC Missense_Mutation p.T112I 0.11 benign(0.008) TCGA-CN-5367-01 8 70667779 70667779 T C SLCO5A1 Missense_Mutation p.K380E 0.07 tolerated(0.3) benign(0.043) TCGA-CN-5367-01 9 109688535 109688535 A G ZNF462 Missense_Mutation p.Y781C 0.06 probably_damaging(0.942) TCGA-CN-5367-01 9 113703901 113703901 A G LPAR1 Missense_Mutation p.M198T 0.56 deleterious(0) probably_damaging(0.985) TCGA-CN-5367-01 9 86587824 86587824 G C HNRNPK Missense_Mutation p.L194V 0.07 tolerated(0.15) possibly_damaging(0.659) TCGA-CN-5367-01 X 134715606 134715606 G A DDX26B 3'UTR 0.13 TCGA-CN-5367-01 X 140786553 140786553 G T SPANXD Missense_Mutation p.Q4K 0.17 tolerated_low_confidence(0.29) benign(0.01) TCGA-CN-5367-01 X 147026445 147026445 C T FMR1 Missense_Mutation p.L510F 0.04 deleterious(0) probably_damaging(0.989) TCGA-CN-5367-01 X 18924612 18924612 C T PHKA2 Splice_Site p.X936_splice 0.30 TCGA-CN-5367-01 X 23398142 23398142 G T PTCHD1 Missense_Mutation p.Q262H 0.17 tolerated(0.55) benign(0.016) TCGA-CN-5367-01 X 54334451 54334451 A G WNK3 Silent p.V331V 0.08 TCGA-CN-5367-01 X 64138901 64138901 A G ZC4H2 Intron 0.06 TCGA-CN-5367-01 X 73740906 73740906 G A SLC16A2 Missense_Mutation p.R171Q 0.07 tolerated(0.08) probably_damaging(0.998) TCGA-CN-5367-01 X 83128622 83128622 C G CYLC1 Missense_Mutation p.D302E 0.17 deleterious(0.02) unknown(0) TCGA-CN-5369-01 10 101715777 101715777 G C DNMBP Nonsense_Mutation p.S485* 0.05 TCGA-CN-5369-01 10 105172995 105172995 G A PDCD11 Silent p.V367V 0.12 TCGA-CN-5369-01 10 11504430 11504430 A G USP6NL 3'UTR 0.09 TCGA-CN-5369-01 10 126683151 126683151 C T CTBP2 Missense_Mutation p.V763M 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-CN-5369-01 10 133950586 133950586 G A JAKMIP3 Missense_Mutation p.E394K 0.08 deleterious(0) benign(0.109) TCGA-CN-5369-01 10 16957109 16957109 T C CUBN Missense_Mutation p.T2425A 0.09 tolerated(0.28) benign(0) TCGA-CN-5369-01 10 31137576 31137576 C A ZNF438 Silent p.L586L 0.11 TCGA-CN-5369-01 10 31816027 31816027 A G ZEB1 Silent p.E1071E 0.13 TCGA-CN-5369-01 10 55566511 55566511 G A PCDH15 Missense_Mutation p.A1625V 0.06 tolerated_low_confidence(0.2) benign(0.041) TCGA-CN-5369-01 10 7765488 7765488 C T ITIH2 Silent p.V314V 0.07 TCGA-CN-5369-01 10 81051988 81051988 C T ZMIZ1 Nonsense_Mutation p.Q278* 0.09 TCGA-CN-5369-01 10 99215505 99215507 AAG - ZDHHC16 In_Frame_Del p.K306del 0.11 TCGA-CN-5369-01 11 103814225 103814225 T A PDGFD Missense_Mutation p.T243S 0.12 tolerated(0.19) benign(0.014) TCGA-CN-5369-01 11 103814353 103814353 A G PDGFD Missense_Mutation p.V200A 0.19 tolerated(0.05) benign(0.196) TCGA-CN-5369-01 11 105962080 105962080 G A AASDHPPT Missense_Mutation p.G190E 0.10 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 11 108384641 108384641 T A EXPH5 Missense_Mutation p.E531D 0.10 tolerated(0.24) benign(0.212) TCGA-CN-5369-01 11 113111552 113111552 G A NCAM1 Intron 0.06 TCGA-CN-5369-01 11 116730111 116730111 G A SIK3 Missense_Mutation p.R773C 0.11 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-CN-5369-01 11 118352585 118352585 C T KMT2A Nonsense_Mutation p.R1264* 0.07 TCGA-CN-5369-01 11 118398294 118398294 G A TTC36 Missense_Mutation p.G29R 0.06 tolerated(0.15) benign(0.166) TCGA-CN-5369-01 11 123601661 123601661 C T ZNF202 5'UTR 0.08 TCGA-CN-5369-01 11 124947343 124947343 C T SLC37A2 Intron 0.12 TCGA-CN-5369-01 11 17408585 17408585 C T KCNJ11 Missense_Mutation p.D352N 0.08 tolerated(0.52) benign(0.002) TCGA-CN-5369-01 11 4112527 4112527 C T STIM1 Silent p.S519S 0.05 TCGA-CN-5369-01 11 44286446 44286446 C T ALX4 Missense_Mutation p.M398I 0.09 deleterious(0) probably_damaging(0.932) TCGA-CN-5369-01 11 46717606 46717606 C T ARHGAP1 Missense_Mutation p.E18K 0.21 tolerated(0.74) benign(0.008) TCGA-CN-5369-01 11 5142588 5142588 T C OR52A4 RNA 0.10 TCGA-CN-5369-01 11 5373628 5373628 T C OR51B6 Silent p.I297I 0.09 TCGA-CN-5369-01 11 5530434 5530434 G C UBQLN3 Missense_Mutation p.Q119E 0.08 tolerated(0.25) benign(0.021) TCGA-CN-5369-01 11 58480325 58480325 G A GLYAT Missense_Mutation p.T75I 0.05 deleterious(0.02) possibly_damaging(0.903) TCGA-CN-5369-01 11 59271520 59271520 G A OR4D11 Missense_Mutation p.V158M 0.09 deleterious(0.02) possibly_damaging(0.527) TCGA-CN-5369-01 11 61539102 61539102 C T MYRF Nonsense_Mutation p.R291* 0.07 TCGA-CN-5369-01 11 62291421 62291421 C T AHNAK Missense_Mutation p.E3490K 0.05 probably_damaging(0.997) TCGA-CN-5369-01 11 62301181 62301181 G C AHNAK Silent p.L236L 0.06 TCGA-CN-5369-01 11 6262839 6262839 C T CNGA4 Missense_Mutation p.P366S 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-CN-5369-01 11 66411036 66411036 G A RBM14-RBM4 Silent p.P151P 0.07 TCGA-CN-5369-01 11 66638348 66638348 A G PC Missense_Mutation p.Y217H 0.07 deleterious(0) possibly_damaging(0.793) TCGA-CN-5369-01 11 66838947 66838947 C T RHOD Silent p.L169L 0.14 TCGA-CN-5369-01 11 6704001 6704001 G A MRPL17 Missense_Mutation p.R74C 0.10 deleterious(0) probably_damaging(0.986) TCGA-CN-5369-01 11 67262398 67262398 C T PITPNM1 Silent p.A887A 0.17 TCGA-CN-5369-01 11 67269818 67269818 C - PITPNM1 Frame_Shift_Del p.Q121Sfs*8 0.11 TCGA-CN-5369-01 11 68549278 68549278 C T CPT1A Missense_Mutation p.S438N 0.04 tolerated(0.42) benign(0.01) TCGA-CN-5369-01 11 68704242 68704242 A G IGHMBP2 Missense_Mutation p.H765R 0.08 tolerated(0.14) benign(0.356) TCGA-CN-5369-01 11 68846367 68846367 A G TPCN2 Missense_Mutation p.N473S 0.06 deleterious(0.02) benign(0.192) TCGA-CN-5369-01 11 7021140 7021140 C G ZNF214 Missense_Mutation p.D592H 0.12 deleterious(0.02) possibly_damaging(0.771) TCGA-CN-5369-01 11 7064475 7064475 C T NLRP14 Silent p.S406S 0.08 TCGA-CN-5369-01 11 71249137 71249137 C T KRTAP5-8 Silent p.S12S 0.10 TCGA-CN-5369-01 11 71259681 71259681 T G KRTAP5-9 5'UTR 0.09 TCGA-CN-5369-01 11 75282867 75282867 G A SERPINH1 Silent p.K332K 0.11 TCGA-CN-5369-01 11 89431786 89431786 C G FOLH1B RNA 0.14 TCGA-CN-5369-01 11 92086794 92086794 T C FAT3 Missense_Mutation p.Y506H 0.06 probably_damaging(0.997) TCGA-CN-5369-01 11 92715107 92715107 C T MTNR1B Silent p.L240L 0.12 TCGA-CN-5369-01 11 94113678 94113678 G C GPR83 Silent p.L303L 0.08 TCGA-CN-5369-01 12 100042354 100042354 A - FAM71C Frame_Shift_Del p.K136Nfs*5 0.14 TCGA-CN-5369-01 12 106464625 106464625 G A NUAK1 Silent p.F253F 0.12 TCGA-CN-5369-01 12 11083308 11083308 C A PRH2 Missense_Mutation p.P50T 0.06 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-CN-5369-01 12 11214111 11214111 G A TAS2R46 Silent p.F261F 0.06 TCGA-CN-5369-01 12 11214216 11214216 T G TAS2R46 Missense_Mutation p.K226N 0.10 deleterious(0) benign(0.333) TCGA-CN-5369-01 12 113704019 113704019 C T TPCN1 Missense_Mutation p.P163L 0.10 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 12 113714796 113714796 C T TPCN1 Nonsense_Mutation p.R411* 0.06 TCGA-CN-5369-01 12 117962654 117962654 G A KSR2 Intron 0.14 TCGA-CN-5369-01 12 18435201 18435202 - T PIK3C2G Frame_Shift_Ins p.V65Cfs*16 0.13 TCGA-CN-5369-01 12 25368473 25368473 T C KRAS Missense_Mutation p.T158A 0.06 tolerated(0.32) benign(0.025) TCGA-CN-5369-01 12 27181336 27181337 CA - MED21 Frame_Shift_Del p.Q127Vfs*11 0.08 TCGA-CN-5369-01 12 39735313 39735313 C G KIF21A Missense_Mutation p.E639Q 0.15 deleterious(0.03) possibly_damaging(0.744) TCGA-CN-5369-01 12 46322292 46322292 C G SCAF11 Missense_Mutation p.E398Q 0.07 deleterious(0) benign(0.393) TCGA-CN-5369-01 12 49169205 49169205 C T ADCY6 Missense_Mutation p.E621K 0.11 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 12 49312494 49312494 G C CCDC65 Missense_Mutation p.K278N 0.06 deleterious(0) probably_damaging(0.937) TCGA-CN-5369-01 12 49312668 49312668 G C CCDC65 Silent p.L336L 0.14 TCGA-CN-5369-01 12 50536932 50536932 C T CERS5 Missense_Mutation p.R120Q 0.06 deleterious(0.04) possibly_damaging(0.832) TCGA-CN-5369-01 12 51634709 51634709 G A DAZAP2 Missense_Mutation p.A63T 0.05 tolerated_low_confidence(0.08) probably_damaging(0.957) TCGA-CN-5369-01 12 52824378 52824378 C T KRT75 Missense_Mutation p.E328K 0.04 deleterious(0) probably_damaging(0.955) TCGA-CN-5369-01 12 53421849 53421849 C T EIF4B Missense_Mutation p.R286C 0.09 deleterious(0) possibly_damaging(0.689) TCGA-CN-5369-01 12 53680438 53680438 G A ESPL1 Silent p.E1306E 0.10 TCGA-CN-5369-01 12 54338828 54338828 C T HOXC13 Missense_Mutation p.R261C 0.09 deleterious(0) probably_damaging(0.998) TCGA-CN-5369-01 12 54686499 54686499 C T NFE2 Missense_Mutation p.E261K 0.07 deleterious(0.01) benign(0.171) TCGA-CN-5369-01 12 54894338 54894338 C T NCKAP1L Missense_Mutation p.R79C 0.05 deleterious(0.02) possibly_damaging(0.892) TCGA-CN-5369-01 12 56355458 56355470 GTTCCAGGCTTTG - PMEL Frame_Shift_Del p.K42Gfs*32 0.10 TCGA-CN-5369-01 12 57348692 57348692 G A RDH16 Silent p.L190L 0.10 TCGA-CN-5369-01 12 6886563 6886563 G A LAG3 Nonsense_Mutation p.W397* 0.10 TCGA-CN-5369-01 12 8374654 8374654 C A FAM90A1 Missense_Mutation p.D387Y 0.09 tolerated(0.55) benign(0.004) TCGA-CN-5369-01 12 86373610 86373610 C G MGAT4C Missense_Mutation p.Q298H 0.10 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 12 89917031 89917031 A - GALNT4 Frame_Shift_Del p.P433Lfs*26 0.08 TCGA-CN-5369-01 12 91348417 91348417 A G CCER1 Missense_Mutation p.W35R 0.16 deleterious(0.04) probably_damaging(0.934) TCGA-CN-5369-01 12 98926626 98926626 G A TMPO Silent p.V197V 0.06 TCGA-CN-5369-01 13 108518310 108518310 G T FAM155A Missense_Mutation p.P212H 0.05 deleterious(0.01) benign(0.366) TCGA-CN-5369-01 13 108861664 108861664 G A LIG4 Silent p.N651N 0.13 TCGA-CN-5369-01 13 111563113 111563113 T C ANKRD10 Missense_Mutation p.E72G 0.08 deleterious(0) possibly_damaging(0.811) TCGA-CN-5369-01 13 115089332 115089332 G A CHAMP1 Silent p.Q5Q 0.10 TCGA-CN-5369-01 13 25072325 25072325 G A PARP4 Nonsense_Mutation p.Q174* 0.12 TCGA-CN-5369-01 13 30104749 30104749 C T SLC7A1 Silent p.V210V 0.11 TCGA-CN-5369-01 13 31822041 31822041 G A B3GALTL Missense_Mutation p.E133K 0.08 deleterious(0) probably_damaging(0.997) TCGA-CN-5369-01 13 33017343 33017343 A G N4BP2L2 Missense_Mutation p.I444T 0.16 deleterious(0) possibly_damaging(0.577) TCGA-CN-5369-01 13 41341161 41341161 T - MRPS31 Frame_Shift_Del p.N54Ifs*12 0.09 TCGA-CN-5369-01 13 47316017 47316017 C T LRCH1 3'UTR 0.10 TCGA-CN-5369-01 13 48985612 48985612 G C LPAR6 Missense_Mutation p.F316L 0.14 tolerated(0.65) benign(0.003) TCGA-CN-5369-01 13 52518381 52518381 A G ATP7B Missense_Mutation p.V1036A 0.12 tolerated(0.19) probably_damaging(0.945) TCGA-CN-5369-01 13 58299367 58299367 G C PCDH17 Missense_Mutation p.R1140T 0.05 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-CN-5369-01 13 60686226 60686226 G A DIAPH3 Missense_Mutation p.S103L 0.08 tolerated(0.13) possibly_damaging(0.493) TCGA-CN-5369-01 13 73636025 73636025 G C KLF5 Silent p.L96L 0.08 TCGA-CN-5369-01 14 103805991 103805991 A - EIF5 Frame_Shift_Del p.A310Pfs*13 0.10 TCGA-CN-5369-01 14 105931110 105931110 G A MTA1 Missense_Mutation p.A482T 0.14 deleterious(0) probably_damaging(0.998) TCGA-CN-5369-01 14 106090882 106090882 G A IGHG4 Silent p.C305C 0.06 TCGA-CN-5369-01 14 23945268 23945268 G A NGDN Missense_Mutation p.A151T 0.15 tolerated(0.39) benign(0.004) TCGA-CN-5369-01 14 32562761 32562761 A C ARHGAP5 Missense_Mutation p.E962D 0.08 tolerated(0.17) possibly_damaging(0.562) TCGA-CN-5369-01 14 33292499 33292499 G A AKAP6 Missense_Mutation p.G1827D 0.06 tolerated(0.09) benign(0.101) TCGA-CN-5369-01 14 36140678 36140678 A - RALGAPA1 Frame_Shift_Del p.S1201Hfs*16 0.13 TCGA-CN-5369-01 14 39734617 39734617 G A CTAGE5 5'Flank 0.08 TCGA-CN-5369-01 14 39782616 39782616 C A CTAGE5 Missense_Mutation p.S427R 0.09 deleterious(0.01) possibly_damaging(0.481) TCGA-CN-5369-01 14 47120636 47120636 T C RPL10L Missense_Mutation p.M102V 0.07 deleterious(0.02) benign(0.037) TCGA-CN-5369-01 14 50360887 50360887 C G ARF6 Missense_Mutation p.R145G 0.15 tolerated_low_confidence(0.07) benign(0.025) TCGA-CN-5369-01 14 57092099 57092099 G C TMEM260 Splice_Site p.X467_splice 0.06 TCGA-CN-5369-01 14 63174448 63174448 G A KCNH5 Silent p.H915H 0.08 TCGA-CN-5369-01 14 63174587 63174587 G T KCNH5 Missense_Mutation p.T869K 0.06 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CN-5369-01 14 68274151 68274151 T C ZFYVE26 Missense_Mutation p.T284A 0.13 tolerated(0.25) benign(0) TCGA-CN-5369-01 14 69813867 69813867 G A GALNT16 Missense_Mutation p.R461K 0.08 tolerated(0.61) benign(0.007) TCGA-CN-5369-01 14 74411111 74411111 C G FAM161B Missense_Mutation p.K347N 0.05 tolerated(0.08) benign(0.099) TCGA-CN-5369-01 14 74411195 74411195 C T FAM161B Silent p.L319L 0.06 TCGA-CN-5369-01 14 80677621 80677621 C G DIO2 Missense_Mutation p.K65N 0.09 tolerated(0.78) benign(0.004) TCGA-CN-5369-01 14 81610460 81610460 G A TSHR Silent p.Q686Q 0.11 TCGA-CN-5369-01 14 94187823 94187823 G A PRIMA1 Silent p.N143N 0.08 TCGA-CN-5369-01 14 95670573 95670573 C T CLMN Silent p.A371A 0.10 TCGA-CN-5369-01 15 25925395 25925395 T A ATP10A Missense_Mutation p.I1247F 0.09 deleterious(0.03) benign(0.002) TCGA-CN-5369-01 15 34648388 34648388 C G NUTM1 Missense_Mutation p.Q699E 0.11 deleterious(0.01) benign(0.278) TCGA-CN-5369-01 15 40754430 40754430 T C BAHD1 Silent p.R584R 0.14 TCGA-CN-5369-01 15 42104154 42104154 G A MAPKBP1 Splice_Site p.X110_splice 0.10 TCGA-CN-5369-01 15 43720272 43720272 C T TP53BP1 Missense_Mutation p.R1257H 0.08 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 15 43940128 43940128 G A CATSPER2 Silent p.I44I 0.05 TCGA-CN-5369-01 15 45981265 45981265 T C SQRDL Missense_Mutation p.V382A 0.11 deleterious(0) possibly_damaging(0.763) TCGA-CN-5369-01 15 50925140 50925140 T - TRPM7 Frame_Shift_Del p.T353Hfs*16 0.12 TCGA-CN-5369-01 15 51221216 51221216 C T AP4E1 Nonsense_Mutation p.R185* 0.13 TCGA-CN-5369-01 15 64017534 64017534 C T HERC1 Silent p.T1175T 0.08 TCGA-CN-5369-01 15 65370407 65370407 C T KBTBD13 Silent p.G418G 0.24 TCGA-CN-5369-01 15 68118400 68118400 C T SKOR1 Silent p.G264G 0.11 TCGA-CN-5369-01 15 75702243 75702243 C T SIN3A Silent p.P417P 0.10 TCGA-CN-5369-01 15 79606297 79606297 G C TMED3 Missense_Mutation p.E123Q 0.05 tolerated(0.06) benign(0.439) TCGA-CN-5369-01 15 82575356 82575356 G T FAM154B Missense_Mutation p.G384C 0.06 deleterious(0) probably_damaging(0.998) TCGA-CN-5369-01 15 83456014 83456014 C A FSD2 Missense_Mutation p.M43I 0.09 tolerated(0.23) benign(0.001) TCGA-CN-5369-01 15 83679041 83679041 G A C15orf40 Silent p.C62C 0.10 TCGA-CN-5369-01 15 83698895 83698895 G A BTBD1 Nonsense_Mutation p.R350* 0.10 TCGA-CN-5369-01 15 89743918 89743918 A G ABHD2 3'UTR 0.19 TCGA-CN-5369-01 15 90784558 90784558 C A GDPGP1 Silent p.R140R 0.11 TCGA-CN-5369-01 16 16103674 16103674 C G ABCC1 Silent p.L89L 0.12 TCGA-CN-5369-01 16 1652541 1652541 G A IFT140 Silent p.L67L 0.08 TCGA-CN-5369-01 16 2283182 2283182 G T E4F1 Nonsense_Mutation p.E352* 0.10 TCGA-CN-5369-01 16 23625399 23625399 C A PALB2 Missense_Mutation p.G1043C 0.09 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 16 27539953 27539953 G A GTF3C1 Silent p.I313I 0.11 TCGA-CN-5369-01 16 2880712 2880712 G T ZG16B Nonsense_Mutation p.G60* 0.07 TCGA-CN-5369-01 16 46712964 46712964 C T VPS35 Missense_Mutation p.R204Q 0.10 deleterious(0.02) possibly_damaging(0.894) TCGA-CN-5369-01 16 46781826 46781826 G T MYLK3 Missense_Mutation p.L94M 0.08 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 16 50261849 50261849 C G PAPD5 Missense_Mutation p.Q619E 0.09 tolerated_low_confidence(0.11) benign(0.3) TCGA-CN-5369-01 16 54966679 54966680 AG - IRX5 Frame_Shift_Del p.N175* 0.08 TCGA-CN-5369-01 16 57597804 57597804 C A GPR114 Silent p.P114P 0.14 TCGA-CN-5369-01 16 62055216 62055216 G T CDH8 Missense_Mutation p.P31Q 0.07 tolerated(0.38) probably_damaging(0.993) TCGA-CN-5369-01 16 66613547 66613547 C T CMTM2 Missense_Mutation p.P13S 0.08 deleterious_low_confidence(0.05) unknown(0) TCGA-CN-5369-01 16 67272176 67272176 G A FHOD1 Missense_Mutation p.S159L 0.12 tolerated(0.36) probably_damaging(0.994) TCGA-CN-5369-01 16 69874159 69874159 G A WWP2 Silent p.L157L 0.10 TCGA-CN-5369-01 16 70367483 70367483 T G DDX19B Nonstop_Mutation p.*480Gext*36 0.07 TCGA-CN-5369-01 16 74951881 74951881 C T WDR59 Silent p.T304T 0.08 TCGA-CN-5369-01 16 75268875 75268875 G - BCAR1 Frame_Shift_Del p.P687Lfs*61 0.12 TCGA-CN-5369-01 16 75513534 75513534 C G CHST6 Missense_Mutation p.D65H 0.08 deleterious(0) probably_damaging(0.966) TCGA-CN-5369-01 16 75563209 75563209 C T CHST5 Silent p.A358A 0.11 TCGA-CN-5369-01 16 774185 774185 G A CCDC78 Missense_Mutation p.A325V 0.08 deleterious(0.04) probably_damaging(0.91) TCGA-CN-5369-01 16 83999318 83999318 C T OSGIN1 Silent p.L380L 0.07 TCGA-CN-5369-01 16 85689374 85689374 C T GSE1 Silent p.F280F 0.10 TCGA-CN-5369-01 16 88778042 88778042 G T CTU2 Splice_Site p.X95_splice 0.07 TCGA-CN-5369-01 16 89254679 89254679 C T CDH15 Silent p.L322L 0.10 TCGA-CN-5369-01 17 10430045 10430045 T C MYH2 Missense_Mutation p.Y1353C 0.11 deleterious(0.02) probably_damaging(0.943) TCGA-CN-5369-01 17 10541713 10541713 C T MYH3 Missense_Mutation p.E1126K 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-CN-5369-01 17 11872838 11872838 G C DNAH9 Missense_Mutation p.Q4485H 0.24 probably_damaging(0.976) TCGA-CN-5369-01 17 12847469 12847469 G A ARHGAP44 Missense_Mutation p.E273K 0.15 deleterious(0) probably_damaging(0.997) TCGA-CN-5369-01 17 1326781 1326781 C G CRK 3'UTR 0.13 TCGA-CN-5369-01 17 18198093 18198093 C G TOP3A Missense_Mutation p.E333Q 0.10 deleterious(0) probably_damaging(0.98) TCGA-CN-5369-01 17 26820669 26820669 G T SLC13A2 Missense_Mutation p.R369M 0.11 deleterious(0) possibly_damaging(0.863) TCGA-CN-5369-01 17 27963208 27963208 A - SSH2 Frame_Shift_Del p.F653Lfs*4 0.10 TCGA-CN-5369-01 17 2867170 2867170 G A RAP1GAP2 Silent p.P100P 0.18 TCGA-CN-5369-01 17 29206468 29206468 G A ATAD5 Missense_Mutation p.G1347D 0.11 deleterious(0) possibly_damaging(0.887) TCGA-CN-5369-01 17 34964340 34964340 G A MRM1 Missense_Mutation p.E259K 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5369-01 17 37922297 37922297 C T IKZF3 Missense_Mutation p.E426K 0.08 deleterious(0.01) benign(0.212) TCGA-CN-5369-01 17 38711666 38711666 G A CCR7 Silent p.Y155Y 0.13 TCGA-CN-5369-01 17 3961447 3961447 G A ZZEF1 Missense_Mutation p.S1669F 0.08 deleterious(0.01) possibly_damaging(0.836) TCGA-CN-5369-01 17 4088250 4088250 G A ANKFY1 Missense_Mutation p.T563M 0.09 deleterious(0) probably_damaging(0.998) TCGA-CN-5369-01 17 45056080 45056080 C G RPRML Missense_Mutation p.M98I 0.20 deleterious(0) probably_damaging(0.986) TCGA-CN-5369-01 17 47797166 47797166 C G FAM117A Missense_Mutation p.E222Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 17 58303585 58303585 T C USP32 Missense_Mutation p.N416S 0.11 tolerated(0.64) benign(0.003) TCGA-CN-5369-01 17 6589436 6589436 T C SLC13A5 3'UTR 0.08 TCGA-CN-5369-01 17 7127027 7127027 C T ACADVL Missense_Mutation p.A439V 0.09 deleterious(0) possibly_damaging(0.899) TCGA-CN-5369-01 17 7155818 7155818 G T ELP5 5'UTR 0.12 TCGA-CN-5369-01 17 7227188 7227188 C T NEURL4 Missense_Mutation p.A736T 0.06 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 17 7240019 7240019 C G ACAP1 5'UTR 0.09 TCGA-CN-5369-01 17 73625900 73625900 G C RECQL5 Missense_Mutation p.S612C 0.08 deleterious(0) possibly_damaging(0.88) TCGA-CN-5369-01 17 73738804 73738804 G A ITGB4 Missense_Mutation p.G975D 0.07 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 17 7701100 7701100 C G DNAH2 Missense_Mutation p.S2728C 0.09 possibly_damaging(0.676) TCGA-CN-5369-01 17 80763847 80763847 C T TBCD Silent p.D349D 0.08 TCGA-CN-5369-01 18 13095576 13095576 C T CEP192 Missense_Mutation p.S2110F 0.09 tolerated(0.1) probably_damaging(0.971) TCGA-CN-5369-01 18 31538274 31538274 C T NOL4 Missense_Mutation p.E389K 0.07 deleterious(0.01) benign(0.072) TCGA-CN-5369-01 18 33269223 33269223 G A GALNT1 Nonsense_Mutation p.W316* 0.08 TCGA-CN-5369-01 18 48465980 48465980 T C ME2 Silent p.I486I 0.05 TCGA-CN-5369-01 18 54448880 54448880 C A WDR7 Silent p.V1061V 0.07 TCGA-CN-5369-01 18 67993105 67993105 G A SOCS6 Missense_Mutation p.V401M 0.10 tolerated(0.22) benign(0.03) TCGA-CN-5369-01 18 6983142 6983142 C A LAMA1 Nonsense_Mutation p.E1918* 0.11 TCGA-CN-5369-01 18 77170881 77170881 G A NFATC1 Silent p.T189T 0.09 TCGA-CN-5369-01 18 77624217 77624217 G A KCNG2 Missense_Mutation p.V184M 0.14 deleterious(0.02) benign(0.135) TCGA-CN-5369-01 19 10893656 10893656 C T DNM2 Missense_Mutation p.R237C 0.14 deleterious(0) probably_damaging(0.993) TCGA-CN-5369-01 19 11030598 11030598 C T CARM1 Silent p.V384V 0.08 TCGA-CN-5369-01 19 11978597 11978597 G C ZNF439 Missense_Mutation p.G238A 0.11 deleterious(0.01) probably_damaging(0.939) TCGA-CN-5369-01 19 12826503 12826503 C T TNPO2 Missense_Mutation p.E126K 0.12 deleterious(0.01) benign(0.192) TCGA-CN-5369-01 19 12978714 12978714 C T MAST1 Missense_Mutation p.A830V 0.21 tolerated_low_confidence(0.43) benign(0) TCGA-CN-5369-01 19 15374334 15374334 C T BRD4 Missense_Mutation p.R413H 0.09 possibly_damaging(0.812) TCGA-CN-5369-01 19 18242831 18242831 C T MAST3 Silent p.I486I 0.10 TCGA-CN-5369-01 19 308884 308886 GTA - MIER2 In_Frame_Del p.Y342del 0.13 TCGA-CN-5369-01 19 34912527 34912527 C T PDCD2L Nonsense_Mutation p.Q301* 0.10 TCGA-CN-5369-01 19 35449519 35449519 T C ZNF792 Missense_Mutation p.R414G 0.11 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 19 36037660 36037660 G C TMEM147 Missense_Mutation p.K98N 0.06 deleterious(0) probably_damaging(0.993) TCGA-CN-5369-01 19 36237739 36237739 C T PSENEN Silent p.G99G 0.18 TCGA-CN-5369-01 19 3747953 3747953 G A TJP3 Silent p.G837G 0.13 TCGA-CN-5369-01 19 38861539 38861539 G A CATSPERG 3'UTR 0.13 TCGA-CN-5369-01 19 39125797 39125797 G T EIF3K Intron 0.07 TCGA-CN-5369-01 19 39911453 39911453 C G PLEKHG2 Missense_Mutation p.R454G 0.12 deleterious_low_confidence(0.01) benign(0.422) TCGA-CN-5369-01 19 40316612 40316612 G - DYRK1B Frame_Shift_Del p.Q545Sfs*19 0.13 TCGA-CN-5369-01 19 40901949 40901949 C A PRX Missense_Mutation p.K770N 0.21 deleterious(0.01) possibly_damaging(0.607) TCGA-CN-5369-01 19 43025447 43025447 C G CEACAM1 Missense_Mutation p.R310S 0.05 tolerated(0.16) benign(0.238) TCGA-CN-5369-01 19 44099016 44099016 C T IRGQ Missense_Mutation p.E159K 0.35 tolerated_low_confidence(0.07) benign(0.041) TCGA-CN-5369-01 19 45153219 45153219 C T PVR Missense_Mutation p.T189M 0.17 tolerated(0.08) benign(0.085) TCGA-CN-5369-01 19 45593422 45593422 G A GEMIN7 Missense_Mutation p.G17D 0.05 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 19 47231911 47231911 G A STRN4 Missense_Mutation p.R335W 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-CN-5369-01 19 47424760 47424760 A - ARHGAP35 Frame_Shift_Del p.K945Rfs*3 0.11 TCGA-CN-5369-01 19 48244287 48244287 G - EHD2 Frame_Shift_Del p.G412Afs*35 0.13 TCGA-CN-5369-01 19 49994485 49994485 C T RPL13A Intron 0.15 TCGA-CN-5369-01 19 50017242 50017242 G C FCGRT Silent p.L59L 0.11 TCGA-CN-5369-01 19 50462016 50462016 G A SIGLEC11 Missense_Mutation p.S416L 0.13 tolerated(0.09) possibly_damaging(0.78) TCGA-CN-5369-01 19 51917032 51917032 C T SIGLEC10 Silent p.R585R 0.06 TCGA-CN-5369-01 19 52887776 52887776 C T ZNF880 Nonsense_Mutation p.Q315* 0.16 TCGA-CN-5369-01 19 53270399 53270399 A G ZNF600 Missense_Mutation p.Y204H 0.06 tolerated(0.54) possibly_damaging(0.725) TCGA-CN-5369-01 19 53344521 53344521 C A ZNF468 Silent p.L342L 0.06 TCGA-CN-5369-01 19 55086049 55086049 G T LILRA2 Nonsense_Mutation p.G118* 0.09 TCGA-CN-5369-01 19 56569758 56569758 C G NLRP5 Missense_Mutation p.S1151C 0.12 tolerated(0.32) benign(0.061) TCGA-CN-5369-01 19 57839434 57839434 G A ZNF543 Missense_Mutation p.E202K 0.06 tolerated(1) benign(0.005) TCGA-CN-5369-01 19 58572993 58572993 G A ZNF135 Missense_Mutation p.E39K 0.05 deleterious(0) probably_damaging(0.987) TCGA-CN-5369-01 19 58601680 58601680 A T ZSCAN18 Silent p.P41P 0.29 TCGA-CN-5369-01 19 59028991 59028991 C T ZBTB45 Missense_Mutation p.R17H 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-CN-5369-01 19 6664868 6664868 C G TNFSF14 3'UTR 0.06 TCGA-CN-5369-01 19 8181655 8181655 G A FBN3 Silent p.R1205R 0.06 TCGA-CN-5369-01 19 8974003 8974003 T C MUC16 Missense_Mutation p.Y14223C 0.22 probably_damaging(0.997) TCGA-CN-5369-01 19 9524481 9524481 G C ZNF266 Missense_Mutation p.H374D 0.09 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 1 10659377 10659377 A C PEX14 Silent p.T84T 0.11 TCGA-CN-5369-01 1 110030321 110030321 G A ATXN7L2 Missense_Mutation p.E199K 0.06 tolerated(0.71) benign(0.004) TCGA-CN-5369-01 1 110301152 110301152 C T EPS8L3 Missense_Mutation p.E200K 0.08 deleterious(0.03) benign(0.297) TCGA-CN-5369-01 1 111146896 111146896 A G KCNA2 Missense_Mutation p.V170A 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-CN-5369-01 1 111216030 111216030 C T KCNA3 Missense_Mutation p.G468S 0.13 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 1 118530499 118530499 G A SPAG17 Missense_Mutation p.T1876I 0.10 tolerated(0.12) benign(0.01) TCGA-CN-5369-01 1 12785336 12785336 C A AADACL3 Silent p.A142A 0.08 TCGA-CN-5369-01 1 146658581 146658581 C T FMO5 Missense_Mutation p.M500I 0.09 deleterious(0) benign(0.063) TCGA-CN-5369-01 1 152552311 152552311 G T LCE3D Silent p.S34S 0.08 TCGA-CN-5369-01 1 154179862 154179862 G A C1orf43 3'UTR 0.06 TCGA-CN-5369-01 1 155735586 155735586 G A GON4L Silent p.H1226H 0.05 TCGA-CN-5369-01 1 155744857 155744857 C A GON4L Silent p.L762L 0.07 TCGA-CN-5369-01 1 156617318 156617318 G A BCAN Missense_Mutation p.R162Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-CN-5369-01 1 156617836 156617836 C T BCAN Missense_Mutation p.R235W 0.07 deleterious(0) probably_damaging(0.998) TCGA-CN-5369-01 1 156914199 156914199 C T ARHGEF11 Missense_Mutation p.M1006I 0.07 deleterious(0) possibly_damaging(0.884) TCGA-CN-5369-01 1 160012273 160012273 C T KCNJ10 Missense_Mutation p.S17N 0.09 tolerated(0.44) benign(0.273) TCGA-CN-5369-01 1 161993108 161993108 G A OLFML2B Missense_Mutation p.A38V 0.11 tolerated(0.07) benign(0.006) TCGA-CN-5369-01 1 169096464 169096464 G A ATP1B1 Missense_Mutation p.V129M 0.08 tolerated(0.15) benign(0.002) TCGA-CN-5369-01 1 178414790 178414790 C T RASAL2 Silent p.D540D 0.06 TCGA-CN-5369-01 1 180775644 180775644 G C XPR1 Missense_Mutation p.R211T 0.06 deleterious(0) probably_damaging(0.992) TCGA-CN-5369-01 1 180885980 180885980 C T KIAA1614 Silent p.G247G 0.08 TCGA-CN-5369-01 1 181689432 181689432 C G CACNA1E Missense_Mutation p.I614M 0.12 deleterious(0.02) possibly_damaging(0.767) TCGA-CN-5369-01 1 182873548 182873548 C G SHCBP1L Missense_Mutation p.E452Q 0.08 deleterious(0.01) probably_damaging(0.947) TCGA-CN-5369-01 1 183543721 183543723 CTT - NCF2 In_Frame_Del p.K134del 0.08 TCGA-CN-5369-01 1 201333480 201333480 G T TNNT2 Silent p.A135A 0.11 TCGA-CN-5369-01 1 203025986 203025986 G A PPFIA4 Missense_Mutation p.R266H 0.16 deleterious(0) possibly_damaging(0.557) TCGA-CN-5369-01 1 206858718 206858718 C G MAPKAPK2 Silent p.V48V 0.12 TCGA-CN-5369-01 1 208200421 208200421 C T PLXNA2 3'UTR 0.20 TCGA-CN-5369-01 1 215960129 215960129 T C USH2A Missense_Mutation p.I3424V 0.09 benign(0.003) TCGA-CN-5369-01 1 226829801 226829801 T C ITPKB Missense_Mutation p.K758E 0.06 deleterious(0) benign(0.337) TCGA-CN-5369-01 1 226924442 226924442 G A ITPKB Missense_Mutation p.R240W 0.06 tolerated_low_confidence(0.07) benign(0.153) TCGA-CN-5369-01 1 228462329 228462329 G A OBSCN Missense_Mutation p.G2289S 0.18 benign(0.037) TCGA-CN-5369-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.13 TCGA-CN-5369-01 1 26520297 26520297 C T CATSPER4 Missense_Mutation p.S126F 0.10 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 1 27874901 27874901 G A AHDC1 Silent p.F1242F 0.07 TCGA-CN-5369-01 1 32085276 32085276 G A HCRTR1 Missense_Mutation p.G115S 0.11 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 1 32163681 32163681 G T COL16A1 Silent p.P161P 0.12 TCGA-CN-5369-01 1 36520550 36520550 A G AGO3 Missense_Mutation p.T760A 0.10 deleterious(0) probably_damaging(0.997) TCGA-CN-5369-01 1 39876557 39876557 A G KIAA0754 Missense_Mutation p.Q71R 0.09 benign(0.145) TCGA-CN-5369-01 1 45341334 45341334 C G EIF2B3 Missense_Mutation p.E337Q 0.08 tolerated(0.22) possibly_damaging(0.573) TCGA-CN-5369-01 1 46655573 46655573 G A POMGNT1 Nonsense_Mutation p.R580* 0.11 TCGA-CN-5369-01 1 48703350 48703350 G A SLC5A9 Splice_Site p.X456_splice 0.08 TCGA-CN-5369-01 1 54681872 54681872 G A MRPL37 Missense_Mutation p.R350H 0.11 tolerated(0.08) possibly_damaging(0.679) TCGA-CN-5369-01 1 55561055 55561055 C T USP24 Missense_Mutation p.D2026N 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-CN-5369-01 1 66827446 66827446 C G PDE4B Silent p.V330V 0.09 TCGA-CN-5369-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.13 TCGA-CN-5369-01 1 8421258 8421258 G A RERE Missense_Mutation p.A770V 0.18 possibly_damaging(0.787) TCGA-CN-5369-01 20 3214613 3214613 C T SLC4A11 Missense_Mutation p.A230T 0.12 tolerated(0.06) possibly_damaging(0.903) TCGA-CN-5369-01 20 34809829 34809829 T A EPB41L1 Missense_Mutation p.I828N 0.09 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 20 37634810 37634810 G A DHX35 Missense_Mutation p.A345T 0.06 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 20 43804666 43804666 C T PI3 Missense_Mutation p.R82W 0.11 deleterious(0.01) possibly_damaging(0.88) TCGA-CN-5369-01 20 43851591 43851591 G C SEMG2 Missense_Mutation p.E440Q 0.09 tolerated(0.38) possibly_damaging(0.728) TCGA-CN-5369-01 20 44236721 44236721 G A WFDC9 3'UTR 0.08 TCGA-CN-5369-01 20 44404233 44404233 C T WFDC3 Missense_Mutation p.G168S 0.07 deleterious(0.01) probably_damaging(1) TCGA-CN-5369-01 20 47324916 47324916 G A PREX1 Missense_Mutation p.A222V 0.08 tolerated(0.12) possibly_damaging(0.85) TCGA-CN-5369-01 20 4843461 4843461 C T SLC23A2 Silent p.P483P 0.14 TCGA-CN-5369-01 20 48744600 48744600 G C TMEM189-UBE2V1 Silent p.L201L 0.11 TCGA-CN-5369-01 20 52188284 52188284 C G ZNF217 Nonstop_Mutation p.*1049Sext*4 0.10 TCGA-CN-5369-01 20 58587630 58587630 C T CDH26 Missense_Mutation p.H782Y 0.07 tolerated(0.45) possibly_damaging(0.648) TCGA-CN-5369-01 20 61511065 61511065 C G DIDO1 Missense_Mutation p.Q2081H 0.09 possibly_damaging(0.72) TCGA-CN-5369-01 21 32639270 32639270 G C TIAM1 Missense_Mutation p.Q7E 0.13 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-CN-5369-01 21 46011396 46011396 C A KRTAP10-6 Missense_Mutation p.G324C 0.13 tolerated(1) benign(0.291) TCGA-CN-5369-01 21 47666772 47666772 G A MCM3AP Missense_Mutation p.A1440V 0.09 tolerated(0.21) benign(0.012) TCGA-CN-5369-01 22 19495334 19495336 CTC - CDC45 In_Frame_Del p.S367del 0.11 TCGA-CN-5369-01 22 20761221 20761221 G A ZNF74 Missense_Mutation p.G633D 0.17 tolerated_low_confidence(0.05) benign(0.186) TCGA-CN-5369-01 22 21174109 21174109 A G PI4KA Silent p.S203S 0.04 TCGA-CN-5369-01 22 24431958 24431958 C T CABIN1 5'UTR 0.08 TCGA-CN-5369-01 22 31033023 31033023 A G SLC35E4 Missense_Mutation p.T196A 0.13 deleterious(0) benign(0.343) TCGA-CN-5369-01 22 31644624 31644624 A G LIMK2 5'UTR 0.06 TCGA-CN-5369-01 22 38155562 38155562 G - TRIOBP Intron 0.13 TCGA-CN-5369-01 22 41924069 41924069 G T POLR3H 3'UTR 0.08 TCGA-CN-5369-01 22 43985982 43985982 C T EFCAB6 Missense_Mutation p.E1002K 0.08 deleterious(0.02) possibly_damaging(0.711) TCGA-CN-5369-01 22 50647025 50647025 C T SELO Silent p.S273S 0.09 TCGA-CN-5369-01 2 109111839 109111839 G C GCC2 Missense_Mutation p.E1514Q 0.08 deleterious(0.01) possibly_damaging(0.638) TCGA-CN-5369-01 2 109383191 109383191 G A RANBP2 Missense_Mutation p.E2066K 0.08 tolerated(0.89) probably_damaging(0.952) TCGA-CN-5369-01 2 128935448 128935448 G C UGGT1 Missense_Mutation p.D1223H 0.06 deleterious(0) probably_damaging(0.996) TCGA-CN-5369-01 2 131803638 131803638 G A ARHGEF4 Missense_Mutation p.R650H 0.10 tolerated(0.7) benign(0.06) TCGA-CN-5369-01 2 135745629 135745629 C T MAP3K19 Silent p.S271S 0.18 TCGA-CN-5369-01 2 141625775 141625775 C T LRP1B Missense_Mutation p.M1409I 0.06 benign(0.072) TCGA-CN-5369-01 2 143676239 143676239 C A KYNU Silent p.G77G 0.08 TCGA-CN-5369-01 2 165947702 165947702 G A SCN3A Missense_Mutation p.A1654V 0.04 deleterious(0) possibly_damaging(0.743) TCGA-CN-5369-01 2 168100981 168100981 G A XIRP2 Missense_Mutation p.D1027N 0.07 probably_damaging(1) TCGA-CN-5369-01 2 169757994 169757994 G C G6PC2 Missense_Mutation p.Q51H 0.11 tolerated(0.13) benign(0.013) TCGA-CN-5369-01 2 170428478 170428478 A C FASTKD1 Missense_Mutation p.I21S 0.12 deleterious(0.04) benign(0.081) TCGA-CN-5369-01 2 170558169 170558169 G C PHOSPHO2 Missense_Mutation p.D230H 0.13 deleterious(0) possibly_damaging(0.639) TCGA-CN-5369-01 2 175742857 175742857 C T CHN1 Splice_Site p.X87_splice 0.09 TCGA-CN-5369-01 2 179449452 179449452 C A TTN Missense_Mutation p.R21639L 0.04 TCGA-CN-5369-01 2 182350666 182350666 G A ITGA4 Missense_Mutation p.R367K 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-CN-5369-01 2 183943655 183943655 T C DUSP19 5'UTR 0.15 TCGA-CN-5369-01 2 20138032 20138032 C T WDR35 Missense_Mutation p.R697Q 0.09 deleterious(0) benign(0.177) TCGA-CN-5369-01 2 202141631 202141631 C T CASP8 Missense_Mutation p.R307W 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-CN-5369-01 2 202342454 202342454 G C STRADB Missense_Mutation p.D221H 0.13 deleterious(0) possibly_damaging(0.852) TCGA-CN-5369-01 2 210574652 210574652 C T MAP2 Missense_Mutation p.R1583C 0.16 deleterious(0) probably_damaging(0.993) TCGA-CN-5369-01 2 225365164 225365164 G A CUL3 Missense_Mutation p.T509M 0.07 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 2 228881385 228881385 G A SPHKAP Silent p.N1395N 0.16 TCGA-CN-5369-01 2 228883163 228883163 C A SPHKAP Missense_Mutation p.G803C 0.12 deleterious(0.02) benign(0.159) TCGA-CN-5369-01 2 237074823 237074823 C G GBX2 Missense_Mutation p.E261Q 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-CN-5369-01 2 240981426 240981426 G C PRR21 Missense_Mutation p.S325C 0.14 tolerated_low_confidence(0.14) unknown(0) TCGA-CN-5369-01 2 24443816 24443816 C T ITSN2 Missense_Mutation p.E1233K 0.06 deleterious(0.02) unknown(0) TCGA-CN-5369-01 2 24952396 24952396 G C NCOA1 Missense_Mutation p.E971D 0.10 tolerated(0.46) benign(0.013) TCGA-CN-5369-01 2 27684340 27684340 C T IFT172 Nonsense_Mutation p.W746* 0.07 TCGA-CN-5369-01 2 3504681 3504681 C T ADI1 Silent p.R108R 0.09 TCGA-CN-5369-01 2 38202364 38202364 G A RMDN2 Missense_Mutation p.E391K 0.10 tolerated(0.11) benign(0.046) TCGA-CN-5369-01 2 39934249 39934249 G A TMEM178A Missense_Mutation p.C192Y 0.10 tolerated(0.32) benign(0.162) TCGA-CN-5369-01 2 47639588 47639588 A - MSH2 Frame_Shift_Del p.A230Lfs*16 0.08 TCGA-CN-5369-01 2 48718299 48718299 C T PPP1R21 Missense_Mutation p.S530F 0.08 deleterious(0.02) benign(0.367) TCGA-CN-5369-01 2 53995077 53995077 G C CHAC2 Missense_Mutation p.Q18H 0.12 deleterious(0.04) benign(0.022) TCGA-CN-5369-01 2 54856884 54856884 G A SPTBN1 Nonsense_Mutation p.W871* 0.16 TCGA-CN-5369-01 2 70890424 70890424 C G ADD2 3'UTR 0.11 TCGA-CN-5369-01 2 74653396 74653396 G A RTKN Missense_Mutation p.R556C 0.06 deleterious_low_confidence(0) benign(0.28) TCGA-CN-5369-01 2 74725408 74725408 G A LBX2 Silent p.F77F 0.10 TCGA-CN-5369-01 2 74756406 74756406 G A AUP1 Silent p.F64F 0.14 TCGA-CN-5369-01 2 74758074 74758074 G A HTRA2 Missense_Mutation p.D250N 0.06 tolerated(0.08) possibly_damaging(0.715) TCGA-CN-5369-01 2 80136879 80136879 G A CTNNA2 Missense_Mutation p.V338M 0.09 deleterious(0) possibly_damaging(0.906) TCGA-CN-5369-01 2 98409014 98409014 C T TMEM131 Missense_Mutation p.A1327T 0.17 tolerated_low_confidence(0.44) benign(0.001) TCGA-CN-5369-01 3 10146171 10146171 G A FANCD2OS Silent p.L96L 0.06 TCGA-CN-5369-01 3 112080468 112080468 A - CD200 3'UTR 0.09 TCGA-CN-5369-01 3 11302128 11302128 C T HRH1 Missense_Mutation p.P469S 0.10 deleterious(0) probably_damaging(0.993) TCGA-CN-5369-01 3 120977960 120977960 G C STXBP5L Missense_Mutation p.D635H 0.06 tolerated(0.06) probably_damaging(0.999) TCGA-CN-5369-01 3 124397074 124397074 C T KALRN Missense_Mutation p.R714W 0.16 deleterious(0) probably_damaging(0.947) TCGA-CN-5369-01 3 124839464 124839464 G A SLC12A8 Missense_Mutation p.S268F 0.10 deleterious(0) probably_damaging(0.932) TCGA-CN-5369-01 3 128060436 128060436 G T EEFSEC Missense_Mutation p.D383Y 0.07 deleterious(0.01) possibly_damaging(0.594) TCGA-CN-5369-01 3 172642075 172642075 C G SPATA16 Missense_Mutation p.D421H 0.05 deleterious(0) probably_damaging(0.934) TCGA-CN-5369-01 3 179096140 179096140 G A MFN1 Silent p.K447K 0.09 TCGA-CN-5369-01 3 31665334 31665334 G A STT3B Missense_Mutation p.A570T 0.08 tolerated(0.13) probably_damaging(0.938) TCGA-CN-5369-01 3 32030595 32030595 G C ZNF860 Missense_Mutation p.Q8H 0.05 deleterious(0.02) benign(0.216) TCGA-CN-5369-01 3 37059048 37059048 C T MLH1 Missense_Mutation p.A281V 0.07 tolerated(0.09) benign(0.248) TCGA-CN-5369-01 3 38010893 38010893 C A CTDSPL Intron 0.21 TCGA-CN-5369-01 3 44409183 44409183 A G TCAIM Silent p.R185R 0.13 TCGA-CN-5369-01 3 46400039 46400039 G C CCR2 Intron 0.11 TCGA-CN-5369-01 3 46400105 46400105 G C CCR2 Intron 0.14 TCGA-CN-5369-01 3 46542332 46542332 C G RTP3 Missense_Mutation p.F214L 0.08 tolerated(1) benign(0.035) TCGA-CN-5369-01 3 47462227 47462227 G T SCAP Silent p.A460A 0.10 TCGA-CN-5369-01 3 49455119 49455119 G A AMT Silent p.L356L 0.11 TCGA-CN-5369-01 3 49695281 49695282 - C BSN Frame_Shift_Ins p.L2766Pfs*50 0.12 TCGA-CN-5369-01 3 49698774 49698774 A G BSN Missense_Mutation p.S3166G 0.09 unknown(0) TCGA-CN-5369-01 3 50683648 50683648 G A MAPKAPK3 Missense_Mutation p.G261D 0.06 deleterious(0) probably_damaging(0.991) TCGA-CN-5369-01 3 54958711 54958711 T C LRTM1 Missense_Mutation p.N180S 0.06 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 3 57613942 57613942 C G DENND6A Nonstop_Mutation p.*609Sext*38 0.09 TCGA-CN-5369-01 3 72799729 72799729 G A SHQ1 Silent p.L480L 0.06 TCGA-CN-5369-01 3 73004381 73004381 G C GXYLT2 Missense_Mutation p.E245Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 3 75471362 75471362 G A FAM86DP RNA 0.18 TCGA-CN-5369-01 3 9862377 9862377 C - TTLL3 Frame_Shift_Del p.E371Rfs*44 0.12 TCGA-CN-5369-01 4 100869668 100869668 T C H2AFZ Missense_Mutation p.H113R 0.09 deleterious(0.01) possibly_damaging(0.497) TCGA-CN-5369-01 4 104057410 104057410 C T CENPE Missense_Mutation p.R2137K 0.08 benign(0.004) TCGA-CN-5369-01 4 11401039 11401039 G A HS3ST1 Silent p.H197H 0.10 TCGA-CN-5369-01 4 120442176 120442176 G A PDE5A Missense_Mutation p.R607W 0.07 deleterious(0) probably_damaging(0.997) TCGA-CN-5369-01 4 126336687 126336687 G A FAT4 Missense_Mutation p.R2190H 0.09 benign(0.262) TCGA-CN-5369-01 4 129043274 129043274 T C LARP1B Silent p.N485N 0.12 TCGA-CN-5369-01 4 129121769 129121769 T - LARP1B Frame_Shift_Del p.M753Sfs*21 0.08 TCGA-CN-5369-01 4 140641384 140641384 C G MAML3 Missense_Mutation p.G837A 0.06 benign(0.011) TCGA-CN-5369-01 4 154517420 154517420 C T KIAA0922 Missense_Mutation p.S669F 0.06 deleterious(0.02) possibly_damaging(0.583) TCGA-CN-5369-01 4 164394865 164394865 G A TKTL2 Missense_Mutation p.P8S 0.09 deleterious(0) possibly_damaging(0.808) TCGA-CN-5369-01 4 1729444 1729444 C T TACC3 Silent p.L105L 0.08 TCGA-CN-5369-01 4 177650751 177650751 G C VEGFC Silent p.L99L 0.08 TCGA-CN-5369-01 4 184930441 184930441 C G STOX2 Silent p.L150L 0.14 TCGA-CN-5369-01 4 186425655 186425655 G A PDLIM3 Silent p.L293L 0.12 TCGA-CN-5369-01 4 187530965 187530965 G A FAT1 Missense_Mutation p.S3353F 0.19 possibly_damaging(0.853) TCGA-CN-5369-01 4 38016216 38016216 G A TBC1D1 Silent p.T168T 0.08 TCGA-CN-5369-01 4 38776845 38776845 C T TLR10 Missense_Mutation p.D123N 0.06 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 4 419693 419693 G C ABCA11P RNA 0.12 TCGA-CN-5369-01 4 436405 436406 CT - ZNF721 Frame_Shift_Del p.E617Vfs*27 0.10 TCGA-CN-5369-01 4 437477 437477 G A ZNF721 Missense_Mutation p.S260L 0.06 tolerated(0.57) benign(0.017) TCGA-CN-5369-01 4 48887407 48887407 C G OCIAD2 3'UTR 0.08 TCGA-CN-5369-01 4 57843646 57843646 A G NOA1 Missense_Mutation p.C36R 0.09 tolerated_low_confidence(0.14) benign(0.001) TCGA-CN-5369-01 4 70592759 70592759 C A SULT1B1 3'UTR 0.10 TCGA-CN-5369-01 4 77817771 77817771 C A SOWAHB Missense_Mutation p.G411V 0.11 deleterious(0) probably_damaging(0.953) TCGA-CN-5369-01 4 8021986 8021986 C G ABLIM2 Missense_Mutation p.D438H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5369-01 4 83350506 83350506 G - HNRNPDL Frame_Shift_Del p.P113Lfs*11 0.11 TCGA-CN-5369-01 5 127670419 127670419 C T FBN2 Missense_Mutation p.G1364E 0.10 deleterious(0) probably_damaging(0.948) TCGA-CN-5369-01 5 130782325 130782325 C T RAPGEF6 Missense_Mutation p.R1099H 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5369-01 5 138614653 138614653 C G SNORA74A RNA 0.09 TCGA-CN-5369-01 5 139193008 139193008 C T PSD2 Silent p.D162D 0.07 TCGA-CN-5369-01 5 140230192 140230192 C T PCDHA9 Silent p.I704I 0.08 TCGA-CN-5369-01 5 140236323 140236323 G C PCDHA10 Silent p.L230L 0.05 TCGA-CN-5369-01 5 140256838 140256838 T C PCDHA12 Missense_Mutation p.V594A 0.09 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-CN-5369-01 5 140604569 140604569 C A PCDHB14 Missense_Mutation p.L498M 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.812) TCGA-CN-5369-01 5 140731194 140731194 A G PCDHGB1 Missense_Mutation p.H456R 0.07 deleterious(0.01) benign(0.33) TCGA-CN-5369-01 5 140744135 140744135 C T PCDHGA5 Nonsense_Mutation p.R80* 0.08 TCGA-CN-5369-01 5 140751359 140751359 G A PCDHGB3 Silent p.P466P 0.11 TCGA-CN-5369-01 5 140962827 140962827 G A DIAPH1 Missense_Mutation p.A189V 0.04 unknown(0) TCGA-CN-5369-01 5 141233932 141233932 G C PCDH1 Missense_Mutation p.S1130C 0.10 deleterious(0) probably_damaging(0.995) TCGA-CN-5369-01 5 156565718 156565718 A - MED7 3'UTR 0.11 TCGA-CN-5369-01 5 16694554 16694554 G A MYO10 Silent p.R1242R 0.08 TCGA-CN-5369-01 5 173380196 173380196 C T CPEB4 Missense_Mutation p.A628V 0.06 deleterious(0.04) possibly_damaging(0.588) TCGA-CN-5369-01 5 175782579 175782579 C T KIAA1191 Missense_Mutation p.A68T 0.05 tolerated(0.09) benign(0.118) TCGA-CN-5369-01 5 177022452 177022452 G - TMED9 3'UTR 0.15 TCGA-CN-5369-01 5 180666085 180666085 G A GNB2L1 Silent p.L206L 0.04 TCGA-CN-5369-01 5 26906877 26906877 G C CDH9 Silent p.V198V 0.07 TCGA-CN-5369-01 5 37016183 37016183 G C NIPBL Missense_Mutation p.E1563Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-CN-5369-01 5 38427202 38427202 C T EGFLAM Silent p.F634F 0.11 TCGA-CN-5369-01 5 41019061 41019061 C T MROH2B Missense_Mutation p.R834Q 0.12 tolerated(0.2) benign(0.167) TCGA-CN-5369-01 5 45262736 45262736 T C HCN1 Missense_Mutation p.T654A 0.18 tolerated(0.54) benign(0) TCGA-CN-5369-01 5 52211386 52211386 T A ITGA1 Missense_Mutation p.D650E 0.07 deleterious(0.01) possibly_damaging(0.786) TCGA-CN-5369-01 5 82843897 82843897 G A VCAN Missense_Mutation p.E3163K 0.22 deleterious(0) probably_damaging(0.995) TCGA-CN-5369-01 5 9629207 9629207 T G TAS2R1 3'UTR 0.07 TCGA-CN-5369-01 6 108246120 108246120 C T SEC63 Missense_Mutation p.A81T 0.12 tolerated(0.42) benign(0.071) TCGA-CN-5369-01 6 108492787 108492787 G T NR2E1 Missense_Mutation p.V51F 0.09 deleterious(0.02) possibly_damaging(0.701) TCGA-CN-5369-01 6 109765452 109765452 C T MICAL1 Missense_Mutation p.R1049H 0.08 tolerated(0.27) benign(0.127) TCGA-CN-5369-01 6 130374062 130374062 A G L3MBTL3 Missense_Mutation p.S170G 0.19 tolerated(0.4) benign(0.05) TCGA-CN-5369-01 6 135363201 135363201 T C HBS1L Missense_Mutation p.Y58C 0.13 tolerated(0.18) benign(0.02) TCGA-CN-5369-01 6 136913701 136913701 C G MAP3K5 Missense_Mutation p.S977T 0.06 tolerated(0.19) probably_damaging(0.987) TCGA-CN-5369-01 6 138615205 138615205 G A KIAA1244 Silent p.S1148S 0.09 TCGA-CN-5369-01 6 148855055 148855055 G A SASH1 Missense_Mutation p.R628Q 0.08 deleterious(0.04) benign(0.11) TCGA-CN-5369-01 6 152765550 152765550 T C SYNE1 Missense_Mutation p.H1278R 0.07 possibly_damaging(0.809) TCGA-CN-5369-01 6 152776698 152776698 T C SYNE1 Missense_Mutation p.K919E 0.07 benign(0.196) TCGA-CN-5369-01 6 152826378 152826378 C T SYNE1 Missense_Mutation p.A246T 0.18 possibly_damaging(0.898) TCGA-CN-5369-01 6 159462434 159462434 C T TAGAP Silent p.A143A 0.13 TCGA-CN-5369-01 6 160494801 160494801 G A IGF2R Missense_Mutation p.V1654M 0.12 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 6 20490697 20490697 T - E2F3 3'UTR 0.09 TCGA-CN-5369-01 6 25762243 25762243 G A SLC17A4 Missense_Mutation p.G18D 0.09 tolerated(0.69) benign(0.007) TCGA-CN-5369-01 6 28962832 28962832 G A ZNF311 Silent p.L649L 0.08 TCGA-CN-5369-01 6 29141556 29141556 C G OR2J2 Missense_Mutation p.I48M 0.05 deleterious(0.02) benign(0.094) TCGA-CN-5369-01 6 30122127 30122127 C A TRIM10 Silent p.L355L 0.12 TCGA-CN-5369-01 6 30653805 30653805 G A PPP1R18 5'UTR 0.09 TCGA-CN-5369-01 6 31238116 31238116 C A HLA-C Nonsense_Mutation p.E256* 0.07 TCGA-CN-5369-01 6 32138947 32138947 C A AGPAT1 Intron 0.10 TCGA-CN-5369-01 6 33283004 33283005 CA - ZBTB22 Nonsense_Mutation p.C563* 0.09 TCGA-CN-5369-01 6 38919111 38919111 G A DNAH8 Missense_Mutation p.R3872H 0.10 possibly_damaging(0.67) TCGA-CN-5369-01 6 44414468 44414468 C G CDC5L 3'UTR 0.09 TCGA-CN-5369-01 6 52318995 52318995 C T EFHC1 Nonsense_Mutation p.R276* 0.11 TCGA-CN-5369-01 6 52998973 52998973 G T GCM1 Silent p.S75S 0.07 TCGA-CN-5369-01 6 74520797 74520797 C T CD109 Missense_Mutation p.T1210M 0.09 tolerated(0.3) benign(0.014) TCGA-CN-5369-01 6 78173080 78173080 G A HTR1B Missense_Mutation p.A14V 0.13 tolerated_low_confidence(0.68) benign(0) TCGA-CN-5369-01 6 87993980 87993980 T - GJB7 Frame_Shift_Del p.K217Nfs*34 0.11 TCGA-CN-5369-01 6 99894228 99894228 T C USP45 Missense_Mutation p.S474G 0.14 tolerated(0.15) benign(0.01) TCGA-CN-5369-01 7 101063333 101063333 C T COL26A1 Silent p.R78R 0.16 TCGA-CN-5369-01 7 102996176 102996176 G C PSMC2 Missense_Mutation p.A76P 0.10 tolerated(0.11) possibly_damaging(0.779) TCGA-CN-5369-01 7 103138545 103138545 T A RELN Missense_Mutation p.D2941V 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5369-01 7 103835694 103835694 T C ORC5 Silent p.R150R 0.08 TCGA-CN-5369-01 7 117351448 117351448 A - CTTNBP2 3'UTR 0.35 TCGA-CN-5369-01 7 117375351 117375351 G A CTTNBP2 Silent p.S1220S 0.06 TCGA-CN-5369-01 7 124386639 124386639 C T GPR37 Silent p.S594S 0.11 TCGA-CN-5369-01 7 129910535 129910535 C G CPA2 Silent p.V97V 0.11 TCGA-CN-5369-01 7 135258404 135258404 A - NUP205 Frame_Shift_Del p.N60Mfs*70 0.09 TCGA-CN-5369-01 7 137092654 137092654 T C DGKI Missense_Mutation p.N971D 0.05 tolerated(0.23) possibly_damaging(0.497) TCGA-CN-5369-01 7 138394405 138394405 C T ATP6V0A4 Missense_Mutation p.G798D 0.05 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 7 138874171 138874171 C A TTC26 Missense_Mutation p.S553Y 0.09 deleterious(0.02) benign(0.059) TCGA-CN-5369-01 7 138958066 138958066 A - UBN2 Frame_Shift_Del p.N582Mfs*16 0.11 TCGA-CN-5369-01 7 140301642 140301642 A G DENND2A Missense_Mutation p.Y186H 0.14 deleterious(0) probably_damaging(0.987) TCGA-CN-5369-01 7 142124196 142124196 G A TRBV6-8 Silent p.L94L 0.05 TCGA-CN-5369-01 7 143701563 143701563 G A OR6B1 Silent p.A158A 0.10 TCGA-CN-5369-01 7 148463737 148463737 G A CUL1 Missense_Mutation p.E292K 0.19 deleterious(0.01) possibly_damaging(0.512) TCGA-CN-5369-01 7 148767536 148767536 C G ZNF786 Missense_Mutation p.M776I 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-CN-5369-01 7 150945607 150945607 C T SMARCD3 Silent p.T14T 0.05 TCGA-CN-5369-01 7 158557391 158557391 G C ESYT2 Missense_Mutation p.P408A 0.09 deleterious(0.01) probably_damaging(1) TCGA-CN-5369-01 7 21946011 21946011 G A CDCA7L Missense_Mutation p.R273W 0.07 deleterious(0) probably_damaging(0.992) TCGA-CN-5369-01 7 24324938 24324938 G A NPY Missense_Mutation p.E27K 0.08 deleterious(0.01) benign(0.063) TCGA-CN-5369-01 7 24789321 24789321 G C DFNA5 Missense_Mutation p.L25V 0.12 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 7 25176366 25176366 C T C7orf31 Missense_Mutation p.G333E 0.06 deleterious(0) probably_damaging(1) TCGA-CN-5369-01 7 26412250 26412250 G A SNX10 3'UTR 0.08 TCGA-CN-5369-01 7 30094365 30094365 G A PLEKHA8 Silent p.L279L 0.16 TCGA-CN-5369-01 7 30485798 30485798 G A NOD1 Silent p.L804L 0.06 TCGA-CN-5369-01 7 34724286 34724286 G A NPSR1 Silent p.L90L 0.08 TCGA-CN-5369-01 7 35280555 35280555 T C TBX20 Missense_Mutation p.E250G 0.10 tolerated(0.49) possibly_damaging(0.9) TCGA-CN-5369-01 7 38725147 38725147 C T FAM183B 3'UTR 0.07 TCGA-CN-5369-01 7 42017296 42017296 G C GLI3 Missense_Mutation p.S558W 0.08 deleterious(0) probably_damaging(0.995) TCGA-CN-5369-01 7 43906549 43906549 G A MRPS24 Nonsense_Mutation p.R85* 0.11 TCGA-CN-5369-01 7 44152667 44152667 G C AEBP1 Missense_Mutation p.E883Q 0.04 tolerated(0.09) benign(0.431) TCGA-CN-5369-01 7 45956231 45956231 A T IGFBP3 Missense_Mutation p.N228K 0.09 tolerated(0.2) possibly_damaging(0.688) TCGA-CN-5369-01 7 47906074 47906074 C G PKD1L1 Missense_Mutation p.W1345C 0.08 deleterious(0) probably_damaging(0.975) TCGA-CN-5369-01 7 48428758 48428758 C G ABCA13 Missense_Mutation p.F3865L 0.13 probably_damaging(0.998) TCGA-CN-5369-01 7 6441974 6441974 C T RAC1 Missense_Mutation p.A178V 0.15 deleterious(0) probably_damaging(0.986) TCGA-CN-5369-01 7 72470019 72470019 C T STAG3L3 RNA 0.05 TCGA-CN-5369-01 7 73455550 73455550 C T ELN Silent p.P67P 0.09 TCGA-CN-5369-01 7 88962840 88962840 C T ZNF804B Missense_Mutation p.R182W 0.07 tolerated(0.06) benign(0.04) TCGA-CN-5369-01 7 90338823 90338823 A G CDK14 5'UTR 0.09 TCGA-CN-5369-01 7 92027054 92027054 A G ANKIB1 Missense_Mutation p.S805G 0.11 tolerated_low_confidence(0.52) benign(0.006) TCGA-CN-5369-01 7 94996775 94996775 C T PON3 Silent p.V131V 0.05 TCGA-CN-5369-01 7 99758482 99758482 G A GAL3ST4 Missense_Mutation p.S177L 0.06 tolerated(0.14) benign(0.046) TCGA-CN-5369-01 8 113318368 113318368 C A CSMD3 Missense_Mutation p.D2647Y 0.06 deleterious(0) probably_damaging(0.992) TCGA-CN-5369-01 8 11994694 11994694 G C USP17L2 Missense_Mutation p.L526V 0.09 tolerated(0.42) benign(0.034) TCGA-CN-5369-01 8 120569896 120569896 G C ENPP2 Silent p.L871L 0.09 TCGA-CN-5369-01 8 120772953 120772953 G A TAF2 Nonsense_Mutation p.Q862* 0.08 TCGA-CN-5369-01 8 121379412 121379412 C G COL14A1 Missense_Mutation p.L1694V 0.11 tolerated(0.26) probably_damaging(0.997) TCGA-CN-5369-01 8 124266008 124266008 G C ZHX1 Missense_Mutation p.Q727E 0.10 deleterious(0) probably_damaging(0.991) TCGA-CN-5369-01 8 124267621 124267621 T C ZHX1 Missense_Mutation p.N189S 0.09 tolerated(1) benign(0.001) TCGA-CN-5369-01 8 131792719 131792719 A G ADCY8 Missense_Mutation p.Y1225H 0.08 deleterious_low_confidence(0) benign(0.004) TCGA-CN-5369-01 8 142229061 142229061 C A SLC45A4 Missense_Mutation p.W175C 0.08 tolerated(0.18) possibly_damaging(0.517) TCGA-CN-5369-01 8 144398271 144398271 G C TOP1MT Missense_Mutation p.I452M 0.07 tolerated(0.1) benign(0.159) TCGA-CN-5369-01 8 15480730 15480730 C T TUSC3 Nonsense_Mutation p.Q94* 0.05 TCGA-CN-5369-01 8 18729698 18729698 G A PSD3 Nonsense_Mutation p.Q226* 0.04 TCGA-CN-5369-01 8 48706964 48706964 T A PRKDC Missense_Mutation p.E3518D 0.09 possibly_damaging(0.521) TCGA-CN-5369-01 8 56435944 56435944 G A XKR4 Missense_Mutation p.A371T 0.06 deleterious(0) probably_damaging(0.996) TCGA-CN-5369-01 8 56922761 56922761 C T LYN 3'UTR 0.15 TCGA-CN-5369-01 8 59059120 59059120 G A FAM110B Missense_Mutation p.V111M 0.10 tolerated(0.05) benign(0.303) TCGA-CN-5369-01 8 69103989 69103989 C G PREX2 Missense_Mutation p.P1460R 0.11 tolerated(0.15) benign(0.109) TCGA-CN-5369-01 8 75227552 75227552 G T JPH1 Missense_Mutation p.S228Y 0.10 deleterious(0) probably_damaging(0.993) TCGA-CN-5369-01 8 87498871 87498871 C T RMDN1 Missense_Mutation p.E113K 0.11 tolerated(0.16) benign(0.005) TCGA-CN-5369-01 8 92083441 92083441 C T OTUD6B Missense_Mutation p.A83V 0.15 deleterious(0.02) possibly_damaging(0.897) TCGA-CN-5369-01 9 101552604 101552604 G A ANKS6 Missense_Mutation p.A215V 0.10 tolerated(0.07) probably_damaging(0.929) TCGA-CN-5369-01 9 113275247 113275247 A G SVEP1 Missense_Mutation p.L421P 0.14 possibly_damaging(0.868) TCGA-CN-5369-01 9 114676954 114676954 G A UGCG Silent p.L56L 0.05 TCGA-CN-5369-01 9 116811382 116811382 G C ZNF618 Missense_Mutation p.Q507H 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5369-01 9 123234044 123234044 C T CDK5RAP2 Missense_Mutation p.E614K 0.14 tolerated(0.07) possibly_damaging(0.905) TCGA-CN-5369-01 9 130474913 130474913 G A C9orf117 Intron 0.18 TCGA-CN-5369-01 9 13121863 13121863 C G MPDZ Missense_Mutation p.Q1702H 0.09 deleterious(0.03) benign(0.035) TCGA-CN-5369-01 9 133376466 133376466 C T ASS1 3'UTR 0.11 TCGA-CN-5369-01 9 134401348 134401348 T C UCK1 Missense_Mutation p.D212G 0.06 deleterious(0) probably_damaging(0.984) TCGA-CN-5369-01 9 139396305 139396305 G A NOTCH1 Nonsense_Mutation p.Q1845* 0.08 TCGA-CN-5369-01 9 139571495 139571495 C T AGPAT2 Missense_Mutation p.G137D 0.09 deleterious(0) possibly_damaging(0.838) TCGA-CN-5369-01 9 140138197 140138197 C G FAM166A Silent p.R303R 0.05 TCGA-CN-5369-01 9 21333198 21333198 G A KLHL9 Missense_Mutation p.S554F 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-CN-5369-01 9 35062342 35062342 C G VCP Missense_Mutation p.E273Q 0.07 deleterious(0.01) probably_damaging(1) TCGA-CN-5369-01 9 35546558 35546558 G A RUSC2 Missense_Mutation p.V14I 0.07 deleterious(0) probably_damaging(0.987) TCGA-CN-5369-01 9 35716472 35716472 T C TLN1 Missense_Mutation p.E847G 0.04 deleterious(0.04) probably_damaging(0.977) TCGA-CN-5369-01 9 36087862 36087862 C G RECK Missense_Mutation p.S270C 0.12 deleterious(0.05) benign(0.408) TCGA-CN-5369-01 9 70871839 70871839 G A CBWD3 Missense_Mutation p.A145T 0.05 tolerated(0.1) probably_damaging(0.992) TCGA-CN-5369-01 9 97084496 97084496 C T NUTM2F Missense_Mutation p.E277K 0.08 deleterious(0.05) possibly_damaging(0.766) TCGA-CN-5369-01 X 102979153 102979153 G T GLRA4 Missense_Mutation p.S116Y 0.06 deleterious(0.04) probably_damaging(1) TCGA-CN-5369-01 X 106845298 106845298 C G FRMPD3 Silent p.L1376L 0.11 TCGA-CN-5369-01 X 106885676 106885676 G T PRPS1 Missense_Mutation p.W162C 0.08 deleterious(0.05) possibly_damaging(0.831) TCGA-CN-5369-01 X 107084402 107084402 G A MID2 Silent p.T169T 0.11 TCGA-CN-5369-01 X 110924449 110924449 G T ALG13 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-CN-5369-01 X 117758580 117758580 C G DOCK11 Missense_Mutation p.R1184G 0.09 tolerated(0.06) benign(0.129) TCGA-CN-5369-01 X 120009419 120009419 C T CT47B1 Missense_Mutation p.G36S 0.10 tolerated(0.53) probably_damaging(0.915) TCGA-CN-5369-01 X 124029940 124029941 - T TENM1 Frame_Shift_Ins p.M123Nfs*11 0.14 TCGA-CN-5369-01 X 12734553 12734553 G A FRMPD4 Missense_Mutation p.A659T 0.10 tolerated_low_confidence(0.18) benign(0.017) TCGA-CN-5369-01 X 129483264 129483264 C A SLC25A14 Silent p.T119T 0.10 TCGA-CN-5369-01 X 130409661 130409661 C T IGSF1 Missense_Mutation p.R997Q 0.09 tolerated(1) benign(0.001) TCGA-CN-5369-01 X 135741392 135741392 G C CD40LG Missense_Mutation p.E202Q 0.09 deleterious(0.04) possibly_damaging(0.605) TCGA-CN-5369-01 X 141291342 141291342 C A MAGEC2 Missense_Mutation p.K144N 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-CN-5369-01 X 149013598 149013598 C T MAGEA8 Silent p.C184C 0.07 TCGA-CN-5369-01 X 151284016 151284016 G A RP11-1007I13.4 RNA 0.06 TCGA-CN-5369-01 X 153049647 153049647 G - SRPK3 Frame_Shift_Del p.G377Afs*16 0.12 TCGA-CN-5369-01 X 153577807 153577807 A G FLNA Missense_Mutation p.V2560A 0.06 deleterious(0) probably_damaging(0.972) TCGA-CN-5369-01 X 21875588 21875588 G A YY2 Missense_Mutation p.R329H 0.10 deleterious(0.03) probably_damaging(1) TCGA-CN-5369-01 X 2793882 2793882 C T GYG2 Missense_Mutation p.A388V 0.14 tolerated(0.25) benign(0.212) TCGA-CN-5369-01 X 31164450 31164450 T C DMD Missense_Mutation p.M3627V 0.08 benign(0.043) TCGA-CN-5369-01 X 32663245 32663245 A G DMD Missense_Mutation p.S329P 0.05 benign(0.007) TCGA-CN-5369-01 X 34149420 34149420 G A FAM47A Missense_Mutation p.R326C 0.11 tolerated(0.31) benign(0.339) TCGA-CN-5369-01 X 37028001 37028001 C T FAM47C Silent p.R506R 0.08 TCGA-CN-5369-01 X 37655262 37655262 T C CYBB Missense_Mutation p.V181A 0.07 tolerated(0.09) benign(0.007) TCGA-CN-5369-01 X 41075704 41075704 G C USP9X Missense_Mutation p.D1962H 0.09 tolerated(0.05) benign(0.186) TCGA-CN-5369-01 X 48319088 48319088 G A SLC38A5 Missense_Mutation p.R339C 0.13 deleterious(0) probably_damaging(0.997) TCGA-CN-5369-01 X 54574764 54574764 C T GNL3L Missense_Mutation p.R245C 0.15 deleterious(0.04) benign(0.011) TCGA-CN-5369-01 X 65413477 65413477 C A HEPH Missense_Mutation p.L510M 0.19 tolerated(0.05) possibly_damaging(0.513) TCGA-CN-5369-01 X 69255292 69255292 G A EDA Missense_Mutation p.E337K 0.09 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-CN-5369-01 X 70472945 70472945 G A ZMYM3 Missense_Mutation p.S54L 0.14 deleterious_low_confidence(0.04) benign(0.012) TCGA-CN-5369-01 X 73960813 73960813 C G KIAA2022 Missense_Mutation p.Q1193H 0.09 deleterious(0.01) probably_damaging(0.946) TCGA-CN-5369-01 X 76937131 76937131 G C ATRX Missense_Mutation p.S1206C 0.04 possibly_damaging(0.847) TCGA-CN-5369-01 X 77395061 77395061 G T TAF9B Silent p.A16A 0.06 TCGA-CN-5369-01 X 79999689 79999689 G A BRWD3 Missense_Mutation p.R219C 0.06 deleterious(0) probably_damaging(0.999) TCGA-CN-5369-01 X 80049247 80049247 G C BRWD3 Missense_Mutation p.P69A 0.09 tolerated(0.28) benign(0.015) TCGA-CN-5369-01 X 91134260 91134261 AC - PCDH11X Frame_Shift_Del p.T1009Qfs*33 0.11 TCGA-CN-5370-01 10 103921945 103921945 G A NOLC1 Silent p.E673E 0.16 TCGA-CN-5370-01 10 15628625 15628625 A G ITGA8 Missense_Mutation p.L777P 0.20 tolerated(0.11) probably_damaging(0.992) TCGA-CN-5370-01 10 27537737 27537741 TGCTT - RP11-85G18.6 Intron 0.12 TCGA-CN-5370-01 10 6066285 6066285 G C IL2RA Missense_Mutation p.Q97E 0.11 tolerated(0.31) benign(0.059) TCGA-CN-5370-01 10 88452313 88452313 C T LDB3 Missense_Mutation p.A362V 0.14 tolerated(0.18) probably_damaging(0.954) TCGA-CN-5370-01 11 1271810 1271810 C A MUC5B Missense_Mutation p.A4567D 0.25 unknown(0) TCGA-CN-5370-01 11 46917452 46917452 T A LRP4 Missense_Mutation p.D389V 0.23 deleterious(0) probably_damaging(0.998) TCGA-CN-5370-01 11 7059962 7059962 G A NLRP14 Missense_Mutation p.E49K 0.10 deleterious(0.04) possibly_damaging(0.504) TCGA-CN-5370-01 11 74880401 74880401 T G SLCO2B1 Missense_Mutation p.I211S 0.08 deleterious(0) probably_damaging(0.999) TCGA-CN-5370-01 12 109201543 109201543 G A SSH1 Silent p.P199P 0.26 TCGA-CN-5370-01 12 13717534 13717534 G A GRIN2B Missense_Mutation p.R880C 0.15 deleterious(0) possibly_damaging(0.867) TCGA-CN-5370-01 12 15722430 15722430 G C PTPRO Missense_Mutation p.E943Q 0.07 tolerated(0.29) benign(0.024) TCGA-CN-5370-01 12 49420564 49420564 C A KMT2D Missense_Mutation p.C5062F 0.17 unknown(0) TCGA-CN-5370-01 12 72425343 72425343 C T TPH2 Silent p.F447F 0.12 TCGA-CN-5370-01 13 101289875 101289875 G A TMTC4 Missense_Mutation p.R306C 0.07 deleterious(0) probably_damaging(0.998) TCGA-CN-5370-01 13 20041462 20041462 A G TPTE2 Silent p.L139L 0.22 TCGA-CN-5370-01 13 37269176 37269176 G C SERTM1 5'UTR 0.23 TCGA-CN-5370-01 13 37269601 37269601 G A SERTM1 3'UTR 0.26 TCGA-CN-5370-01 13 42404684 42404684 C T VWA8 Missense_Mutation p.D561N 0.26 deleterious(0) probably_damaging(0.978) TCGA-CN-5370-01 13 96237020 96237020 C T DZIP1 Missense_Mutation p.A832T 0.29 tolerated(0.32) benign(0.012) TCGA-CN-5370-01 14 102516786 102516786 C G DYNC1H1 Silent p.V4609V 0.11 TCGA-CN-5370-01 14 20781879 20781879 G A CCNB1IP1 Nonsense_Mutation p.Q127* 0.11 TCGA-CN-5370-01 14 21109439 21109439 T C OR6S1 Missense_Mutation p.M138V 0.20 deleterious(0) probably_damaging(0.942) TCGA-CN-5370-01 14 69257036 69257036 G A ZFP36L1 Silent p.P77P 0.18 TCGA-CN-5370-01 14 69701563 69701563 C T EXD2 Silent p.V288V 0.19 TCGA-CN-5370-01 14 77941934 77941934 G A ISM2 3'UTR 0.21 TCGA-CN-5370-01 15 101775715 101775715 G C CHSY1 Missense_Mutation p.P130A 0.19 tolerated(0.11) benign(0.034) TCGA-CN-5370-01 15 25448404 25448404 G A SNORD115-18 RNA 0.05 TCGA-CN-5370-01 15 31294456 31294456 T C TRPM1 Missense_Mutation p.I1500V 0.23 tolerated_low_confidence(0.32) benign(0) TCGA-CN-5370-01 15 50212513 50212513 G A ATP8B4 Missense_Mutation p.A618V 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-CN-5370-01 15 70960742 70960742 T C UACA Missense_Mutation p.I761V 0.23 tolerated(1) benign(0.001) TCGA-CN-5370-01 15 72698993 72698993 C T TMEM202 Missense_Mutation p.L130F 0.14 tolerated(0.11) probably_damaging(0.981) TCGA-CN-5370-01 15 81173350 81173350 C A KIAA1199 Missense_Mutation p.L164M 0.16 deleterious(0) probably_damaging(1) TCGA-CN-5370-01 16 4164320 4164320 A T ADCY9 Missense_Mutation p.I375N 0.22 deleterious(0) possibly_damaging(0.897) TCGA-CN-5370-01 16 68156924 68156924 C G NFATC3 Missense_Mutation p.Q380E 0.14 tolerated(0.18) benign(0.132) TCGA-CN-5370-01 16 87960541 87960541 G C CA5A Silent p.L51L 0.22 TCGA-CN-5370-01 17 11556233 11556233 C G DNAH9 Missense_Mutation p.L837V 0.25 possibly_damaging(0.706) TCGA-CN-5370-01 17 20109115 20109115 A - SPECC1 Frame_Shift_Del p.V586* 0.18 TCGA-CN-5370-01 17 27286791 27286791 C G SEZ6 Missense_Mutation p.E566Q 0.09 deleterious(0) probably_damaging(0.982) TCGA-CN-5370-01 17 36492869 36492869 G A GPR179 Missense_Mutation p.R407W 0.12 tolerated(0.2) benign(0.052) TCGA-CN-5370-01 17 48243421 48243421 G A SGCA Nonsense_Mutation p.W7* 0.05 TCGA-CN-5370-01 17 48695588 48695588 G A CACNA1G Missense_Mutation p.D1771N 0.23 tolerated(0.86) benign(0.264) TCGA-CN-5370-01 17 56676800 56676800 T C TEX14 Missense_Mutation p.I642V 0.18 tolerated(0.41) benign(0.005) TCGA-CN-5370-01 17 67094139 67094139 C T ABCA6 Silent p.P1014P 0.19 TCGA-CN-5370-01 17 73568022 73568022 C A LLGL2 Silent p.I779I 0.17 TCGA-CN-5370-01 17 74639688 74639688 C G ST6GALNAC1 Silent p.L11L 0.15 TCGA-CN-5370-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.28 tolerated(0.11) benign(0.308) TCGA-CN-5370-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.31 TCGA-CN-5370-01 17 76354904 76354904 C T SOCS3 Silent p.K91K 0.14 TCGA-CN-5370-01 19 14938846 14938846 C A OR7A5 Missense_Mutation p.D70Y 0.27 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CN-5370-01 19 15374344 15374344 G A BRD4 Missense_Mutation p.R410C 0.31 possibly_damaging(0.898) TCGA-CN-5370-01 19 43349212 43349212 C T PSG10P RNA 0.25 TCGA-CN-5370-01 19 5210481 5210481 C T PTPRS Missense_Mutation p.R1829Q 0.22 deleterious(0.02) benign(0.012) TCGA-CN-5370-01 19 55107880 55107880 C G LILRA1 Nonsense_Mutation p.Y395* 0.04 TCGA-CN-5370-01 19 58003591 58003591 G A ZNF419 Intron 0.22 TCGA-CN-5370-01 19 8563261 8563261 T C PRAM1 Missense_Mutation p.I477M 0.50 deleterious(0) benign(0.382) TCGA-CN-5370-01 1 109446790 109446790 C G GPSM2 Nonsense_Mutation p.S369* 0.15 TCGA-CN-5370-01 1 1325617 1325617 G A CCNL2 Silent p.P333P 0.14 TCGA-CN-5370-01 1 144882464 144882464 G A PDE4DIP Silent p.F1185F 0.06 TCGA-CN-5370-01 1 153790617 153790618 - A GATAD2B Frame_Shift_Ins p.V210Cfs*15 0.12 TCGA-CN-5370-01 1 160109515 160109515 C T ATP1A2 Missense_Mutation p.R976C 0.26 deleterious(0) probably_damaging(0.946) TCGA-CN-5370-01 1 185274695 185274696 - CT IVNS1ABP Frame_Shift_Ins p.S246Rfs*23 0.13 TCGA-CN-5370-01 1 204082212 204082212 G A SOX13 Missense_Mutation p.D57N 0.21 tolerated(0.55) benign(0.001) TCGA-CN-5370-01 1 22048140 22048140 T C USP48 Intron 0.16 TCGA-CN-5370-01 1 235324324 235324324 C T RBM34 Missense_Mutation p.V38I 0.06 deleterious(0.01) probably_damaging(0.974) TCGA-CN-5370-01 1 243362360 243362360 A G CEP170 Splice_Site p.X211_splice 0.12 TCGA-CN-5370-01 1 248458187 248458187 G A OR2T12 Missense_Mutation p.R232C 0.21 tolerated(0.05) benign(0.075) TCGA-CN-5370-01 1 909316 909316 G T PLEKHN1 Missense_Mutation p.G513V 0.17 deleterious(0.04) probably_damaging(0.978) TCGA-CN-5370-01 20 29992772 29992772 C T DEFB121 Missense_Mutation p.V59I 0.27 tolerated(0.45) benign(0.417) TCGA-CN-5370-01 20 33369945 33369945 C T NCOA6 Missense_Mutation p.V72M 0.21 probably_damaging(0.991) TCGA-CN-5370-01 20 33587469 33587469 G A MYH7B Missense_Mutation p.E1588K 0.17 possibly_damaging(0.574) TCGA-CN-5370-01 20 43836893 43836893 G A SEMG1 Missense_Mutation p.E319K 0.18 tolerated(0.19) possibly_damaging(0.738) TCGA-CN-5370-01 21 38467718 38467718 C G TTC3 Missense_Mutation p.I252M 0.07 tolerated(0.37) benign(0.403) TCGA-CN-5370-01 21 45859043 45859043 G T TRPM2 Missense_Mutation p.G1421C 0.18 deleterious(0) probably_damaging(1) TCGA-CN-5370-01 21 45859044 45859044 G T TRPM2 Missense_Mutation p.G1421V 0.18 deleterious(0) probably_damaging(1) TCGA-CN-5370-01 22 21988525 21988525 G T CCDC116 Missense_Mutation p.R96L 0.28 tolerated(0.09) benign(0.133) TCGA-CN-5370-01 22 29737728 29737728 G A AP1B1 Missense_Mutation p.R520W 0.35 deleterious(0) probably_damaging(1) TCGA-CN-5370-01 22 36723509 36723510 - A MYH9 Frame_Shift_Ins p.C172Lfs*4 0.10 TCGA-CN-5370-01 22 36894235 36894235 G A FOXRED2 Intron 0.11 TCGA-CN-5370-01 2 15417095 15417095 C T NBAS Missense_Mutation p.E1757K 0.22 tolerated(0.35) benign(0.079) TCGA-CN-5370-01 2 179474486 179474486 C T TTN Missense_Mutation p.V17222M 0.03 TCGA-CN-5370-01 2 29462560 29462560 C T ALK Missense_Mutation p.D781N 0.20 tolerated(0.06) probably_damaging(0.977) TCGA-CN-5370-01 2 32477515 32477515 G A NLRC4 Missense_Mutation p.P79S 0.13 tolerated(0.41) benign(0.023) TCGA-CN-5370-01 2 55895069 55895069 T G PNPT1 Missense_Mutation p.Y334S 0.25 tolerated(0.42) benign(0.002) TCGA-CN-5370-01 2 89292132 89292132 C A IGKV1-8 Missense_Mutation p.Q47H 0.17 deleterious(0.02) benign(0.233) TCGA-CN-5370-01 2 98914471 98914471 G A VWA3B Missense_Mutation p.A1087T 0.18 deleterious(0.03) possibly_damaging(0.84) TCGA-CN-5370-01 3 112538730 112538730 G A CD200R1L Missense_Mutation p.S231L 0.11 tolerated(0.41) benign(0.007) TCGA-CN-5370-01 3 11300945 11300945 G A HRH1 Silent p.L74L 0.12 TCGA-CN-5370-01 3 122254893 122254893 C G PARP9 Intron 0.12 TCGA-CN-5370-01 3 126180734 126180734 G A ZXDC Silent p.L591L 0.19 TCGA-CN-5370-01 3 16216900 16216900 T C GALNT15 Missense_Mutation p.L81P 0.07 deleterious(0) probably_damaging(0.937) TCGA-CN-5370-01 3 194126832 194126832 C T ATP13A3 Missense_Mutation p.R1166Q 0.10 tolerated(0.47) benign(0.006) TCGA-CN-5370-01 4 108935703 108935703 G A HADH Silent p.V126V 0.17 TCGA-CN-5370-01 4 128841681 128841681 T C MFSD8 3'UTR 0.30 TCGA-CN-5370-01 4 153897721 153897721 G A FHDC1 Missense_Mutation p.R1093Q 0.14 deleterious(0) probably_damaging(0.925) TCGA-CN-5370-01 4 187539889 187539889 T - FAT1 Frame_Shift_Del p.V2618Ffs*25 0.10 TCGA-CN-5370-01 4 187629576 187629580 TTGTA - FAT1 Frame_Shift_Del p.Y468Sfs*4 0.21 TCGA-CN-5370-01 4 80328273 80328273 A G GK2 Missense_Mutation p.V361A 0.15 deleterious(0) probably_damaging(0.972) TCGA-CN-5370-01 5 140573979 140573979 G A PCDHB10 Nonsense_Mutation p.W618* 0.25 TCGA-CN-5370-01 5 140866446 140866446 G A PCDHGC4 Missense_Mutation p.R569Q 0.22 tolerated(0.2) benign(0.002) TCGA-CN-5370-01 5 149516594 149516594 G A PDGFRB Missense_Mutation p.A6V 0.19 tolerated_low_confidence(0.91) benign(0) TCGA-CN-5370-01 5 68616363 68616363 C T CCDC125 Missense_Mutation p.S2N 0.17 tolerated_low_confidence(0.06) benign(0.001) TCGA-CN-5370-01 6 152832220 152832220 T A SYNE1 Missense_Mutation p.N110Y 0.22 probably_damaging(0.999) TCGA-CN-5370-01 6 34614452 34614452 A C C6orf106 Missense_Mutation p.M146R 0.07 deleterious(0.04) benign(0.275) TCGA-CN-5370-01 6 36989314 36989314 C T FGD2 Silent p.I420I 0.19 TCGA-CN-5370-01 6 40360623 40360623 C T LRFN2 Missense_Mutation p.V477M 0.08 deleterious(0.02) benign(0.322) TCGA-CN-5370-01 6 83832654 83832656 TTA - DOPEY1 In_Frame_Del p.Y433del 0.32 TCGA-CN-5370-01 7 21609805 21609806 - A DNAH11 Frame_Shift_Ins p.L441Ifs*25 0.14 TCGA-CN-5370-01 7 22190076 22190076 G C RAPGEF5 Silent p.L458L 0.07 TCGA-CN-5370-01 7 44684960 44684960 G C OGDH Missense_Mutation p.G86A 0.11 tolerated(0.09) probably_damaging(0.998) TCGA-CN-5370-01 7 45010561 45010561 G A MYO1G Missense_Mutation p.T315M 0.19 tolerated(0.05) probably_damaging(1) TCGA-CN-5370-01 7 73474233 73474250 GGCGTGGCTCCTGGAGTT - ELN In_Frame_Del p.V491_G496del 0.19 TCGA-CN-5370-01 7 92146635 92146635 G C PEX1 Missense_Mutation p.I398M 0.15 tolerated(0.27) benign(0.007) TCGA-CN-5370-01 8 144661945 144661945 G A EEF1D 3'UTR 0.29 TCGA-CN-5370-01 9 104130542 104130542 G A BAAT Missense_Mutation p.R177W 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5370-01 9 107591238 107591238 G T ABCA1 Missense_Mutation p.P692T 0.19 tolerated(0.08) possibly_damaging(0.475) TCGA-CN-5370-01 9 125391138 125391138 C G OR1B1 Missense_Mutation p.R226P 0.06 tolerated(0.08) probably_damaging(0.93) TCGA-CN-5370-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.65 TCGA-CN-5370-01 9 33276501 33276501 C G CHMP5 Missense_Mutation p.I145M 0.12 deleterious(0) benign(0.171) TCGA-CN-5370-01 9 35389842 35389842 G C UNC13B Splice_Site p.X950_splice 0.08 TCGA-CN-5370-01 9 35724572 35724572 C G TLN1 Missense_Mutation p.E170Q 0.58 deleterious(0.01) benign(0.287) TCGA-CN-5370-01 9 35738809 35738809 A T GBA2 Nonsense_Mutation p.Y629* 0.07 TCGA-CN-5370-01 9 75775272 75775272 G T ANXA1 Nonsense_Mutation p.E122* 0.11 TCGA-CN-5370-01 X 102979135 102979135 G T GLRA4 Missense_Mutation p.S122Y 0.48 deleterious(0) probably_damaging(1) TCGA-CN-5370-01 X 130409171 130409171 G C IGSF1 Missense_Mutation p.P1097A 0.05 tolerated(0.21) benign(0.031) TCGA-CN-5370-01 X 133303463 133303463 T A MIR363 RNA 0.41 TCGA-CN-5370-01 X 153284101 153284101 C A IRAK1 Silent p.V226V 0.41 TCGA-CN-5370-01 X 153608360 153608360 T A EMD Silent p.A82A 0.45 TCGA-CN-5370-01 X 34961479 34961479 C T FAM47B Silent p.T177T 0.31 TCGA-CN-5370-01 X 43601196 43601196 G C MAOA Splice_Site p.X389_splice 0.23 TCGA-CN-5370-01 X 48931479 48931479 G A PRAF2 Silent p.L56L 0.42 TCGA-CN-5373-01 11 108143452 108143452 G A ATM Missense_Mutation p.D1053N 0.22 deleterious(0) probably_damaging(0.987) TCGA-CN-5373-01 11 117302401 117302401 C T DSCAML1 Silent p.R1801R 0.27 TCGA-CN-5373-01 11 35513609 35513609 G A PAMR1 Silent p.Y121Y 0.24 TCGA-CN-5373-01 11 59189802 59189802 T C OR5A2 Missense_Mutation p.I209V 0.16 tolerated(0.97) benign(0.002) TCGA-CN-5373-01 11 63403702 63403702 G A ATL3 Missense_Mutation p.R319W 0.19 deleterious(0) probably_damaging(0.997) TCGA-CN-5373-01 11 64825682 64825682 C T NAALADL1 Missense_Mutation p.D76N 0.24 tolerated(0.27) possibly_damaging(0.593) TCGA-CN-5373-01 11 65269788 65269788 A G MALAT1 RNA 0.45 TCGA-CN-5373-01 11 66190251 66190251 A T NPAS4 Silent p.G179G 0.19 TCGA-CN-5373-01 11 7110534 7110534 C T RBMXL2 Silent p.D61D 0.12 TCGA-CN-5373-01 11 84245683 84245683 G A DLG2 Missense_Mutation p.S150L 0.15 deleterious(0.03) probably_damaging(0.962) TCGA-CN-5373-01 11 92534195 92534195 A G FAT3 Silent p.T2672T 0.12 TCGA-CN-5373-01 11 94731017 94731017 C T KDM4D Nonsense_Mutation p.Q161* 0.25 TCGA-CN-5373-01 12 12940702 12940702 G A APOLD1 3'UTR 0.16 TCGA-CN-5373-01 12 132546772 132546772 C T EP400 Nonsense_Mutation p.R2668* 0.21 TCGA-CN-5373-01 12 32446959 32446959 G A BICD1 Missense_Mutation p.R153Q 0.06 tolerated(0.28) probably_damaging(0.975) TCGA-CN-5373-01 12 5021875 5021875 G A KCNA1 Missense_Mutation p.R444H 0.19 tolerated_low_confidence(0.08) benign(0.009) TCGA-CN-5373-01 12 52913851 52913852 - ATCAA KRT5 Frame_Shift_Ins p.S77Ifs*76 0.34 TCGA-CN-5373-01 12 52913991 52913992 - GT KRT5 Frame_Shift_Ins p.S31Pfs*121 0.34 TCGA-CN-5373-01 12 6173440 6173440 G A VWF Silent p.G468G 0.18 TCGA-CN-5373-01 12 6554350 6554350 G A CD27 Missense_Mutation p.R30K 0.23 tolerated(1) benign(0.01) TCGA-CN-5373-01 12 6939120 6939120 G A GPR162 3'Flank 0.21 TCGA-CN-5373-01 12 6952179 6952179 C T GNB3 Missense_Mutation p.R48W 0.06 deleterious(0) probably_damaging(1) TCGA-CN-5373-01 12 70149312 70149312 C T RAB3IP Missense_Mutation p.R58W 0.24 deleterious_low_confidence(0) benign(0.009) TCGA-CN-5373-01 12 79611355 79611355 C T SYT1 Missense_Mutation p.A19V 0.24 tolerated(0.23) possibly_damaging(0.499) TCGA-CN-5373-01 12 81657105 81657105 T C PPFIA2 Missense_Mutation p.H1207R 0.38 tolerated_low_confidence(1) benign(0.012) TCGA-CN-5373-01 13 27216530 27216530 G A WASF3 Silent p.L41L 0.03 TCGA-CN-5373-01 13 42876708 42876708 A G AKAP11 Missense_Mutation p.K1276E 0.21 tolerated(0.05) benign(0.106) TCGA-CN-5373-01 13 42876731 42876731 C T AKAP11 Silent p.F1283F 0.20 TCGA-CN-5373-01 14 106962995 106962995 C T IGHV1-45 Missense_Mutation p.S96N 0.25 tolerated(0.34) benign(0.071) TCGA-CN-5373-01 14 20612693 20612693 G T OR4N5 Missense_Mutation p.A267S 0.21 tolerated(0.27) possibly_damaging(0.794) TCGA-CN-5373-01 14 61746909 61746909 G A TMEM30B Silent p.I319I 0.18 TCGA-CN-5373-01 14 64464044 64464044 A G SYNE2 Missense_Mutation p.R1060G 0.16 benign(0) TCGA-CN-5373-01 14 75538105 75538105 A - ZC2HC1C Frame_Shift_Del p.S278Afs*55 0.22 TCGA-CN-5373-01 15 25222159 25222159 G - SNRPN Frame_Shift_Del p.G136Dfs*6 0.23 TCGA-CN-5373-01 15 27193231 27193231 G A GABRA5 Missense_Mutation p.E414K 0.23 tolerated(0.17) possibly_damaging(0.543) TCGA-CN-5373-01 15 43568582 43568582 A G TGM7 3'UTR 0.29 TCGA-CN-5373-01 15 45658345 45658345 T C GATM Missense_Mutation p.I293V 0.27 tolerated(1) benign(0) TCGA-CN-5373-01 15 65442961 65442961 T C CLPX 3'UTR 0.47 TCGA-CN-5373-01 15 65472462 65472462 G A CLPX Missense_Mutation p.L54F 0.16 tolerated_low_confidence(0.39) benign(0) TCGA-CN-5373-01 15 85201301 85201301 C T NMB Missense_Mutation p.S28N 0.35 tolerated(0.13) benign(0.014) TCGA-CN-5373-01 16 1756596 1756596 G A MAPK8IP3 Missense_Mutation p.D86N 0.19 deleterious(0) probably_damaging(1) TCGA-CN-5373-01 16 4731639 4731639 C T MGRN1 Missense_Mutation p.S407L 0.04 deleterious(0.01) possibly_damaging(0.49) TCGA-CN-5373-01 16 4787863 4787863 C A C16orf71 Missense_Mutation p.D64E 0.23 deleterious(0) probably_damaging(0.978) TCGA-CN-5373-01 16 58031444 58031444 C T ZNF319 Silent p.S242S 0.21 TCGA-CN-5373-01 16 9210684 9210684 A G C16orf72 Missense_Mutation p.N248S 0.22 tolerated(1) benign(0.003) TCGA-CN-5373-01 17 10222179 10222179 C T MYH13 Silent p.E1222E 0.14 TCGA-CN-5373-01 17 10304723 10304723 C A MYH8 Missense_Mutation p.A993S 0.21 tolerated(0.35) benign(0.014) TCGA-CN-5373-01 17 18110247 18110247 C T ALKBH5 Missense_Mutation p.R324W 0.19 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CN-5373-01 17 31415907 31415907 T C ASIC2 Missense_Mutation p.T321A 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CN-5373-01 17 39643670 39643670 G A KRT36 Missense_Mutation p.T307M 0.06 deleterious(0.03) possibly_damaging(0.515) TCGA-CN-5373-01 17 40765019 40765019 G A TUBG1 Missense_Mutation p.M178I 0.27 tolerated(0.29) benign(0.001) TCGA-CN-5373-01 17 40996984 40996984 C T AOC2 Missense_Mutation p.P114L 0.27 deleterious(0.01) benign(0.204) TCGA-CN-5373-01 17 44949908 44949908 C G WNT9B Missense_Mutation p.P35A 0.20 tolerated(0.55) benign(0.005) TCGA-CN-5373-01 17 54872507 54872507 C T C17orf67 Missense_Mutation p.R64H 0.22 deleterious_low_confidence(0.03) benign(0.117) TCGA-CN-5373-01 17 56274611 56274611 C T EPX Silent p.F371F 0.26 TCGA-CN-5373-01 17 61957832 61957832 G A GH2 Silent p.V252V 0.22 TCGA-CN-5373-01 17 62018859 62018859 C T SCN4A Missense_Mutation p.A1595T 0.22 deleterious(0.02) probably_damaging(1) TCGA-CN-5373-01 17 66426234 66426234 G T WIPI1 Missense_Mutation p.L290I 0.22 deleterious(0) possibly_damaging(0.905) TCGA-CN-5373-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.40 deleterious(0) probably_damaging(1) TCGA-CN-5373-01 17 7810280 7810280 T C CHD3 Missense_Mutation p.S1592P 0.18 benign(0.307) TCGA-CN-5373-01 18 39584503 39584503 G A PIK3C3 Missense_Mutation p.E390K 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-CN-5373-01 18 54291640 54291640 C T TXNL1 Missense_Mutation p.R83Q 0.26 tolerated(0.12) benign(0.274) TCGA-CN-5373-01 19 22939037 22939037 A T ZNF99 3'Flank 0.28 TCGA-CN-5373-01 19 40319149 40319149 C A DYRK1B Missense_Mutation p.D199Y 0.35 deleterious(0) probably_damaging(1) TCGA-CN-5373-01 19 47856739 47856739 G A DHX34 Missense_Mutation p.R151H 0.33 deleterious(0) probably_damaging(0.915) TCGA-CN-5373-01 19 49238477 49238477 C T RASIP1 Silent p.L385L 0.21 TCGA-CN-5373-01 19 51525668 51525668 A T KLK11 3'UTR 0.08 TCGA-CN-5373-01 19 53057763 53057763 C G ZNF808 Missense_Mutation p.L532V 0.19 tolerated(0.18) benign(0.027) TCGA-CN-5373-01 19 55752732 55752732 T C PPP6R1 Missense_Mutation p.M346V 0.25 tolerated(1) benign(0) TCGA-CN-5373-01 19 58132398 58132398 T A ZNF134 Missense_Mutation p.V304D 0.21 deleterious(0) possibly_damaging(0.813) TCGA-CN-5373-01 19 58472909 58472909 G A C19orf18 Nonsense_Mutation p.Q128* 0.24 TCGA-CN-5373-01 1 119456776 119456776 G C TBX15 Missense_Mutation p.N190K 0.13 deleterious(0.01) benign(0.369) TCGA-CN-5373-01 1 152278060 152278060 G C FLG Nonsense_Mutation p.S3101* 0.18 TCGA-CN-5373-01 1 156713167 156713167 C T HDGF 3'UTR 0.24 TCGA-CN-5373-01 1 176525520 176525520 C T PAPPA2 Missense_Mutation p.S21F 0.21 deleterious_low_confidence(0.01) benign(0.034) TCGA-CN-5373-01 1 176915237 176915237 G A ASTN1 Missense_Mutation p.L692F 0.05 deleterious(0) possibly_damaging(0.792) TCGA-CN-5373-01 1 184688698 184688698 T C EDEM3 Missense_Mutation p.Y319C 0.19 deleterious(0) probably_damaging(1) TCGA-CN-5373-01 1 198703458 198703458 T C PTPRC Silent p.G727G 0.02 TCGA-CN-5373-01 1 205904837 205904837 G A SLC26A9 Missense_Mutation p.R38C 0.24 tolerated(0.05) benign(0.021) TCGA-CN-5373-01 1 207857235 207857235 C T CR1L Silent p.S132S 0.13 TCGA-CN-5373-01 1 235915445 235915445 A G LYST Missense_Mutation p.L2496P 0.25 deleterious(0) probably_damaging(0.991) TCGA-CN-5373-01 1 26644515 26644515 C T CD52 Missense_Mutation p.R3C 0.27 tolerated_low_confidence(0.06) possibly_damaging(0.835) TCGA-CN-5373-01 1 26888041 26888041 C T RPS6KA1 Missense_Mutation p.R502W 0.04 deleterious(0) possibly_damaging(0.803) TCGA-CN-5373-01 1 32694413 32694413 A G EIF3I Missense_Mutation p.D242G 0.23 deleterious(0.01) possibly_damaging(0.791) TCGA-CN-5373-01 1 33480136 33480136 G C AK2 Missense_Mutation p.P162R 0.15 tolerated(0.05) benign(0.376) TCGA-CN-5373-01 1 33625294 33625294 G A TRIM62 Silent p.S252S 0.29 TCGA-CN-5373-01 1 44422613 44422613 G A IPO13 Nonsense_Mutation p.W412* 0.27 TCGA-CN-5373-01 1 55277720 55277720 G A C1orf177 Missense_Mutation p.G207E 0.25 deleterious(0) probably_damaging(1) TCGA-CN-5373-01 20 25239913 25239913 C T PYGB Missense_Mutation p.T95M 0.23 tolerated(0.14) benign(0.316) TCGA-CN-5373-01 20 39792085 39792085 G T PLCG1 Missense_Mutation p.R286L 0.19 deleterious(0) benign(0.329) TCGA-CN-5373-01 20 43133498 43133498 G A SERINC3 Missense_Mutation p.S273F 0.18 deleterious(0.01) possibly_damaging(0.78) TCGA-CN-5373-01 20 43530177 43530177 G A YWHAB Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0.02) benign(0) TCGA-CN-5373-01 20 50139752 50139752 C T NFATC2 Missense_Mutation p.R343H 0.03 tolerated(0.14) possibly_damaging(0.715) TCGA-CN-5373-01 21 10934945 10934945 T A TPTE Missense_Mutation p.N283I 0.06 deleterious(0.01) probably_damaging(0.96) TCGA-CN-5373-01 21 44323643 44323643 C T NDUFV3 Missense_Mutation p.T174I 0.27 tolerated(0.18) benign(0.037) TCGA-CN-5373-01 22 21133858 21133858 C T SERPIND1 Silent p.F86F 0.28 TCGA-CN-5373-01 2 103324903 103324903 G A SLC9A2 Silent p.S798S 0.28 TCGA-CN-5373-01 2 142238095 142238095 C T LRP1B Silent p.E71E 0.21 TCGA-CN-5373-01 2 179594257 179594257 T A TTN Missense_Mutation p.E6209V 0.22 TCGA-CN-5373-01 2 179606186 179606186 A T TTN Missense_Mutation p.V3925E 0.26 TCGA-CN-5373-01 2 179612040 179612040 G - TTN Intron 0.25 TCGA-CN-5373-01 2 207611051 207611051 C T MDH1B Missense_Mutation p.S439N 0.29 tolerated(0.37) benign(0.008) TCGA-CN-5373-01 2 210595149 210595149 A C MAP2 3'UTR 0.36 TCGA-CN-5373-01 2 223163270 223163270 C A PAX3 Missense_Mutation p.R22L 0.22 deleterious_low_confidence(0.01) benign(0.271) TCGA-CN-5373-01 2 225670158 225670158 C T DOCK10 Silent p.E1301E 0.17 TCGA-CN-5373-01 2 42557335 42557335 G A EML4 Silent p.S978S 0.28 TCGA-CN-5373-01 2 42936268 42936268 G A MTA3 3'UTR 0.42 TCGA-CN-5373-01 2 53927532 53927532 C G ASB3 Missense_Mutation p.G407R 0.15 tolerated(0.21) benign(0.027) TCGA-CN-5373-01 2 74688258 74688258 G A MOGS 3'UTR 0.31 TCGA-CN-5373-01 2 74777400 74777400 C T LOXL3 Missense_Mutation p.G130E 0.05 deleterious(0.03) probably_damaging(1) TCGA-CN-5373-01 2 95940258 95940258 G C PROM2 5'UTR 0.30 TCGA-CN-5373-01 3 132407968 132407968 G A NPHP3 Missense_Mutation p.L945F 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-CN-5373-01 3 1427421 1427421 T C CNTN6 Missense_Mutation p.Y882H 0.24 deleterious(0.02) benign(0.259) TCGA-CN-5373-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.33 tolerated(0.11) possibly_damaging(0.529) TCGA-CN-5373-01 3 183873499 183873499 G A DVL3 Missense_Mutation p.E26K 0.23 deleterious(0.02) benign(0.062) TCGA-CN-5373-01 3 185431231 185431231 G C C3orf65 Missense_Mutation p.D6H 0.06 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-CN-5373-01 3 195712521 195712521 T C SDHAP1 RNA 0.19 TCGA-CN-5373-01 3 38357068 38357068 C G SLC22A14 Silent p.L466L 0.06 TCGA-CN-5373-01 3 62355740 62355740 A T FEZF2 3'UTR 0.29 TCGA-CN-5373-01 3 88039929 88039929 C G HTR1F Missense_Mutation p.N10K 0.30 tolerated(0.26) benign(0.012) TCGA-CN-5373-01 4 100334163 100334163 C T ADH7 3'Flank 0.15 TCGA-CN-5373-01 4 109667991 109667991 T A ETNPPL Missense_Mutation p.I367F 0.25 deleterious(0.02) possibly_damaging(0.846) TCGA-CN-5373-01 4 110433145 110433145 G A SEC24B Silent p.V603V 0.27 TCGA-CN-5373-01 4 110667591 110667591 G A CFI Missense_Mutation p.R406C 0.23 deleterious(0.03) benign(0.213) TCGA-CN-5373-01 4 140810670 140810670 T C MAML3 Silent p.Q640Q 0.19 TCGA-CN-5373-01 4 140810676 140810676 C T MAML3 Silent p.Q638Q 0.26 TCGA-CN-5373-01 4 144141677 144141677 A T USP38 3'UTR 0.13 TCGA-CN-5373-01 4 20619158 20619158 T A SLIT2 Missense_Mutation p.D1411E 0.21 tolerated(0.98) benign(0) TCGA-CN-5373-01 4 38691484 38691484 C T KLF3 Nonsense_Mutation p.Q227* 0.23 TCGA-CN-5373-01 4 53333 53333 G A ZNF595 5'UTR 0.05 TCGA-CN-5373-01 4 73990709 73990709 T A ANKRD17 Missense_Mutation p.N1138I 0.29 benign(0.332) TCGA-CN-5373-01 4 88312201 88312201 G A HSD17B11 Missense_Mutation p.L8F 0.24 tolerated(0.29) benign(0.001) TCGA-CN-5373-01 4 99339876 99339876 G T RAP1GDS1 Missense_Mutation p.V371L 0.04 tolerated(0.05) benign(0.242) TCGA-CN-5373-01 4 996877 996877 G T IDUA Nonsense_Mutation p.E486* 0.25 TCGA-CN-5373-01 5 1052334 1052334 G A SLC12A7 3'UTR 0.29 TCGA-CN-5373-01 5 122135441 122135441 C T SNX2 Missense_Mutation p.S94L 0.21 tolerated(0.12) benign(0.075) TCGA-CN-5373-01 5 140222262 140222262 T C PCDHA8 Silent p.A452A 0.25 TCGA-CN-5373-01 5 140229433 140229433 C T PCDHA9 Silent p.N451N 0.04 TCGA-CN-5373-01 5 140475977 140475977 G A PCDHB2 Missense_Mutation p.A535T 0.13 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CN-5373-01 5 140536980 140536980 C T PCDHB17 Silent p.A468A 0.19 TCGA-CN-5373-01 5 140579470 140579470 C T PCDHB11 Silent p.S41S 0.22 TCGA-CN-5373-01 5 140682600 140682610 GGGATTGCTCG - SLC25A2 Frame_Shift_Del p.R275Cfs*70 0.42 TCGA-CN-5373-01 5 140711947 140711947 G A PCDHGA1 Missense_Mutation p.A566T 0.28 tolerated_low_confidence(0.68) benign(0.014) TCGA-CN-5373-01 5 140743969 140743969 C A PCDHGA5 Nonsense_Mutation p.C24* 0.22 TCGA-CN-5373-01 5 140794626 140794626 C T PCDHGA10 Silent p.G628G 0.20 TCGA-CN-5373-01 5 141336333 141336333 G A PCDH12 Silent p.L362L 0.21 TCGA-CN-5373-01 5 154305443 154305443 G T GEMIN5 Silent p.G424G 0.19 TCGA-CN-5373-01 5 21760760 21760760 C T CDH12 Missense_Mutation p.D514N 0.25 deleterious(0) probably_damaging(1) TCGA-CN-5373-01 5 31515178 31515178 C T DROSHA Missense_Mutation p.E403K 0.16 tolerated(0.08) benign(0.169) TCGA-CN-5373-01 5 36037913 36037913 G T UGT3A2 Silent p.I427I 0.20 TCGA-CN-5373-01 5 36986340 36986340 A G NIPBL Missense_Mutation p.R1020G 0.25 tolerated_low_confidence(0.09) benign(0.001) TCGA-CN-5373-01 5 79031362 79031362 C T CMYA5 Silent p.D2258D 0.18 TCGA-CN-5373-01 5 89947506 89947507 - A GPR98 Frame_Shift_Ins p.I1126Nfs*11 0.21 TCGA-CN-5373-01 5 94204039 94204039 A G MCTP1 Missense_Mutation p.V812A 0.19 tolerated(0.14) benign(0.407) TCGA-CN-5373-01 5 94764361 94764361 G A FAM81B Silent p.E237E 0.03 TCGA-CN-5373-01 6 117127943 117127943 T C GPRC6A Missense_Mutation p.T309A 0.21 tolerated(0.27) benign(0.008) TCGA-CN-5373-01 6 132270566 132270567 - T CTGF Frame_Shift_Ins p.H296Qfs*14 0.36 TCGA-CN-5373-01 6 166831722 166831722 G A RPS6KA2 Silent p.D651D 0.21 TCGA-CN-5373-01 6 29454873 29454873 C T MAS1L Silent p.S269S 0.24 TCGA-CN-5373-01 6 30865889 30865889 C T DDR1 Silent p.S758S 0.11 TCGA-CN-5373-01 6 31922355 31922355 C T NELFE Missense_Mutation p.R240Q 0.28 tolerated(0.07) unknown(0) TCGA-CN-5373-01 6 32134330 32134330 T C EGFL8 Missense_Mutation p.Y53H 0.19 tolerated(0.4) probably_damaging(0.999) TCGA-CN-5373-01 6 33288742 33288742 G A DAXX Silent p.R270R 0.31 TCGA-CN-5373-01 7 102097843 102097843 A T ALKBH4 Nonstop_Mutation p.*303Rext*36 0.17 TCGA-CN-5373-01 7 11630143 11630143 C T THSD7A Missense_Mutation p.C466Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-5373-01 7 143175526 143175526 C A TAS2R41 Silent p.V187V 0.16 TCGA-CN-5373-01 7 150647097 150647097 C T KCNH2 Intron 0.36 TCGA-CN-5373-01 7 31617732 31617732 T C CCDC129 Missense_Mutation p.V311A 0.33 tolerated(0.37) benign(0.012) TCGA-CN-5373-01 7 57528992 57528992 C G ZNF716 Silent p.G275G 0.24 TCGA-CN-5373-01 7 93113265 93113265 G A CALCR Intron 0.25 TCGA-CN-5373-01 8 105160892 105160892 A - RIMS2 Intron 0.19 TCGA-CN-5373-01 8 109001434 109001434 A G RSPO2 Missense_Mutation p.S45P 0.17 tolerated(0.08) possibly_damaging(0.809) TCGA-CN-5373-01 8 110439257 110439257 G A PKHD1L1 Missense_Mutation p.D958N 0.15 deleterious(0.02) benign(0.138) TCGA-CN-5373-01 8 134042151 134042151 C T TG Silent p.G2374G 0.20 TCGA-CN-5373-01 8 134144071 134144071 G A TG Silent p.A2626A 0.22 TCGA-CN-5373-01 8 64122303 64122303 A T YTHDF3 3'UTR 0.19 TCGA-CN-5373-01 8 88886033 88886033 C A DCAF4L2 Missense_Mutation p.R56M 0.42 deleterious(0) probably_damaging(0.968) TCGA-CN-5373-01 9 115598545 115598545 G T SNX30 Nonsense_Mutation p.E224* 0.22 TCGA-CN-5373-01 9 116116596 116116596 C A BSPRY Missense_Mutation p.P93Q 0.19 tolerated(0.17) benign(0.018) TCGA-CN-5373-01 9 139090820 139090820 G A LHX3 Silent p.P185P 0.24 TCGA-CN-5373-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.44 TCGA-CN-5373-01 9 95765216 95765216 C G FGD3 Missense_Mutation p.P155A 0.13 tolerated(0.15) benign(0.342) TCGA-CN-5373-01 X 118587008 118587008 C T SLC25A43 Missense_Mutation p.P336S 0.24 tolerated_low_confidence(0.88) benign(0) TCGA-CN-5373-01 X 123480565 123480565 C A SH2D1A Missense_Mutation p.L25M 0.16 tolerated(0.13) benign(0.025) TCGA-CN-5373-01 X 134305035 134305035 G A CT55 Nonsense_Mutation p.R21* 0.29 TCGA-CN-5373-01 X 135757211 135757211 C T ARHGEF6 Missense_Mutation p.E664K 0.17 deleterious(0) possibly_damaging(0.577) TCGA-CN-5373-01 X 148685619 148685619 A G TMEM185A Intron 0.35 TCGA-CN-5373-01 X 149639448 149639448 G A MAMLD1 Missense_Mutation p.E510K 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-CN-5373-01 X 150844493 150844493 G T PASD1 Nonsense_Mutation p.E734* 0.17 TCGA-CN-5373-01 X 154194878 154194878 T C F8 Missense_Mutation p.Y365C 0.19 deleterious(0.02) possibly_damaging(0.765) TCGA-CN-5373-01 X 35821252 35821252 G C MAGEB16 Silent p.L313L 0.20 TCGA-CN-5373-01 X 41334188 41334188 T A NYX 3'UTR 0.21 TCGA-CN-5373-01 X 47308010 47308010 C G ZNF41 Missense_Mutation p.E387Q 0.18 tolerated(0.09) benign(0.31) TCGA-CN-5373-01 X 54492271 54492271 C T FGD1 Missense_Mutation p.R452H 0.17 deleterious(0) probably_damaging(0.997) TCGA-CN-5373-01 X 63413169 63413169 T A AMER1 5'UTR 0.23 TCGA-CN-5373-01 X 70830641 70830641 G A ACRC Silent p.Q574Q 0.21 TCGA-CN-5373-01 X 73963606 73963606 C G KIAA2022 Missense_Mutation p.E262D 0.03 deleterious(0) probably_damaging(0.998) TCGA-CN-5373-01 X 73963607 73963607 T G KIAA2022 Missense_Mutation p.E262A 0.03 deleterious(0) probably_damaging(0.999) TCGA-CN-5373-01 X 77254135 77254135 C T ATP7A Silent p.C499C 0.22 TCGA-CN-5373-01 X 77395146 77395146 A T TAF9B 5'UTR 0.31 TCGA-CN-5373-01 X 9673050 9673050 G A TBL1X Missense_Mutation p.D378N 0.24 deleterious(0) probably_damaging(0.982) TCGA-CN-5374-01 10 100167372 100167372 C T PYROXD2 Silent p.L94L 0.11 TCGA-CN-5374-01 10 116889158 116889158 A G ATRNL1 Silent p.Q230Q 0.05 TCGA-CN-5374-01 10 118425270 118425270 G T C10orf82 Silent p.T41T 0.10 TCGA-CN-5374-01 10 124753991 124753991 G A IKZF5 Silent p.L189L 0.13 TCGA-CN-5374-01 10 24884722 24884722 T C ARHGAP21 Silent p.K1212K 0.19 TCGA-CN-5374-01 10 50819671 50819671 C T SLC18A3 Silent p.A295A 0.14 TCGA-CN-5374-01 10 52071137 52071137 C T SGMS1 Missense_Mutation p.M260I 0.11 tolerated(0.06) benign(0.016) TCGA-CN-5374-01 10 68857604 68857604 G A LRRTM3 3'UTR 0.16 TCGA-CN-5374-01 10 75874638 75874638 G C VCL Missense_Mutation p.S1080T 0.22 tolerated(0.06) possibly_damaging(0.846) TCGA-CN-5374-01 10 81317181 81317181 G C SFTPA2 Missense_Mutation p.F177L 0.11 tolerated(0.19) benign(0.002) TCGA-CN-5374-01 10 81373490 81373490 C T SFTPA1 Intron 0.12 TCGA-CN-5374-01 10 94376578 94376578 G A KIF11 Missense_Mutation p.A373T 0.15 tolerated(0.3) possibly_damaging(0.463) TCGA-CN-5374-01 11 114027138 114027138 C T ZBTB16 Missense_Mutation p.H450Y 0.14 deleterious(0) possibly_damaging(0.852) TCGA-CN-5374-01 11 120996298 120996298 G C TECTA Missense_Mutation p.W497C 0.22 tolerated(0.15) possibly_damaging(0.571) TCGA-CN-5374-01 11 18127633 18127633 G C SAAL1 5'UTR 0.20 TCGA-CN-5374-01 11 20067214 20067214 C A NAV2 Silent p.R1323R 0.30 TCGA-CN-5374-01 11 57080450 57080450 G A TNKS1BP1 Missense_Mutation p.P571L 0.20 deleterious(0.01) benign(0.217) TCGA-CN-5374-01 11 66358149 66358149 C G CCDC87 Missense_Mutation p.E780Q 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-CN-5374-01 11 66358638 66358638 C T CCDC87 Missense_Mutation p.E617K 0.23 tolerated(0.06) benign(0.115) TCGA-CN-5374-01 11 6643167 6643167 G A DCHS1 Missense_Mutation p.S3247L 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5374-01 11 66619400 66619400 C T PC Missense_Mutation p.A615T 0.13 deleterious(0.02) possibly_damaging(0.681) TCGA-CN-5374-01 11 67925115 67925115 C G SUV420H1 3'UTR 0.22 TCGA-CN-5374-01 11 67925239 67925239 C G SUV420H1 Missense_Mutation p.L858F 0.18 deleterious(0) probably_damaging(0.999) TCGA-CN-5374-01 11 94278550 94278550 G A FUT4 Silent p.Q417Q 0.07 TCGA-CN-5374-01 12 101493406 101493406 C A ANO4 Missense_Mutation p.P651H 0.35 tolerated(0.11) benign(0.003) TCGA-CN-5374-01 12 10772540 10772540 G A STYK1 3'UTR 0.38 TCGA-CN-5374-01 12 112492280 112492280 G A NAA25 Nonsense_Mutation p.R514* 0.19 TCGA-CN-5374-01 12 120884532 120884532 G A GATC Missense_Mutation p.E52K 0.28 deleterious(0.04) possibly_damaging(0.825) TCGA-CN-5374-01 12 2939891 2939891 G A NRIP2 Missense_Mutation p.L160F 0.34 deleterious(0) probably_damaging(0.999) TCGA-CN-5374-01 12 48359698 48359698 C T TMEM106C Missense_Mutation p.S110L 0.35 deleterious(0) probably_damaging(0.953) TCGA-CN-5374-01 12 48388219 48388219 C T COL2A1 Silent p.P268P 0.22 TCGA-CN-5374-01 12 49110484 49110484 G A CCNT1 5'UTR 0.15 TCGA-CN-5374-01 12 7883477 7883477 G T CLEC4C Missense_Mutation p.S138Y 0.33 tolerated(0.28) benign(0.316) TCGA-CN-5374-01 13 111340150 111340150 C T CARS2 Silent p.L163L 0.19 TCGA-CN-5374-01 14 22133750 22133750 G A OR4E2 Missense_Mutation p.G152S 0.13 tolerated(0.07) probably_damaging(0.936) TCGA-CN-5374-01 14 23395383 23395383 G A PRMT5 Missense_Mutation p.L246F 0.27 deleterious(0) probably_damaging(1) TCGA-CN-5374-01 14 23858700 23858700 C T MYH6 Missense_Mutation p.E1294K 0.05 deleterious(0.02) benign(0.032) TCGA-CN-5374-01 14 24976609 24976609 G C CMA1 Missense_Mutation p.F54L 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CN-5374-01 14 36988617 36988617 G A NKX2-1 Intron 0.28 TCGA-CN-5374-01 15 25477466 25477466 G A SNORD115-33 3'Flank 0.13 TCGA-CN-5374-01 15 35086908 35086908 C A ACTC1 Silent p.P34P 0.19 TCGA-CN-5374-01 15 54306794 54306794 C T UNC13C Missense_Mutation p.S565L 0.11 deleterious_low_confidence(0) benign(0.309) TCGA-CN-5374-01 15 67528335 67528335 C T AAGAB Missense_Mutation p.E145K 0.14 deleterious(0.01) possibly_damaging(0.891) TCGA-CN-5374-01 15 82336383 82336383 G A MEX3B Silent p.P276P 0.20 TCGA-CN-5374-01 15 85400161 85400161 G A ALPK3 Missense_Mutation p.S933N 0.14 tolerated_low_confidence(0.12) benign(0.006) TCGA-CN-5374-01 16 3024073 3024073 G T PKMYT1 Missense_Mutation p.P413Q 0.14 deleterious(0.02) probably_damaging(1) TCGA-CN-5374-01 16 3293683 3293683 G T MEFV Missense_Mutation p.L602M 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5374-01 16 50788321 50788321 A G CYLD Missense_Mutation p.N300S 0.13 tolerated(0.79) benign(0.037) TCGA-CN-5374-01 16 53243560 53243560 G A CHD9 Missense_Mutation p.R540H 0.24 probably_damaging(0.999) TCGA-CN-5374-01 16 67325248 67325248 G A KCTD19 Silent p.I843I 0.14 TCGA-CN-5374-01 16 70902676 70902676 G A HYDIN Missense_Mutation p.P3703S 0.27 probably_damaging(0.932) TCGA-CN-5374-01 16 75512869 75512869 C T CHST6 Silent p.A286A 0.11 TCGA-CN-5374-01 16 84214952 84214952 C T TAF1C Silent p.V408V 0.37 TCGA-CN-5374-01 17 15217494 15217494 G A TEKT3 Missense_Mutation p.T263M 0.15 tolerated(0.19) benign(0.041) TCGA-CN-5374-01 17 17701461 17701461 G A RAI1 Silent p.S1733S 0.16 TCGA-CN-5374-01 17 5364405 5364405 C A DHX33 Missense_Mutation p.D235Y 0.16 deleterious(0) probably_damaging(0.954) TCGA-CN-5374-01 17 57775025 57775025 G C PTRH2 Silent p.L105L 0.04 TCGA-CN-5374-01 17 71193179 71193179 G A COG1 Missense_Mutation p.R234K 0.11 deleterious(0) possibly_damaging(0.872) TCGA-CN-5374-01 17 7256895 7256895 G C KCTD11 Missense_Mutation p.D212H 0.05 deleterious(0) probably_damaging(0.998) TCGA-CN-5374-01 17 7462300 7462300 G A TNFSF13 5'UTR 0.08 TCGA-CN-5374-01 17 7753387 7753387 C T KDM6B Intron 0.13 TCGA-CN-5374-01 17 79428095 79428095 G A RP11-1055B8.7 Missense_Mutation p.E2136K 0.18 possibly_damaging(0.563) TCGA-CN-5374-01 18 13885287 13885287 C T MC2R Silent p.K77K 0.05 TCGA-CN-5374-01 18 64239324 64239324 T A CDH19 Nonsense_Mutation p.R40* 0.15 TCGA-CN-5374-01 19 15547866 15547866 C T WIZ Missense_Mutation p.G94S 0.19 deleterious(0) probably_damaging(1) TCGA-CN-5374-01 19 17173586 17173586 G A HAUS8 Missense_Mutation p.P51S 0.13 tolerated(0.4) benign(0.046) TCGA-CN-5374-01 19 19465201 19465201 C T MAU2 Missense_Mutation p.A529V 0.11 deleterious(0) probably_damaging(0.99) TCGA-CN-5374-01 19 21240159 21240159 G A ZNF430 Missense_Mutation p.E349K 0.36 deleterious(0.03) possibly_damaging(0.707) TCGA-CN-5374-01 19 22817248 22817248 C T ZNF492 5'UTR 0.17 TCGA-CN-5374-01 19 23405217 23405217 T C ZNF724P Silent p.K610K 0.16 TCGA-CN-5374-01 19 34912449 34912449 T A PDCD2L Missense_Mutation p.F275I 0.04 deleterious(0) possibly_damaging(0.904) TCGA-CN-5374-01 19 40580486 40580486 A G ZNF780A Silent p.V622V 0.18 TCGA-CN-5374-01 19 419053 419053 G A SHC2 Missense_Mutation p.R542W 0.36 deleterious(0) probably_damaging(1) TCGA-CN-5374-01 19 43406507 43406507 G C PSG6 3'Flank 0.14 TCGA-CN-5374-01 19 44500287 44500287 G A ZNF155 Missense_Mutation p.G104E 0.15 tolerated(0.46) benign(0.329) TCGA-CN-5374-01 19 49693515 49693515 C G TRPM4 Missense_Mutation p.I690M 0.13 deleterious(0) probably_damaging(0.91) TCGA-CN-5374-01 19 50666297 50666297 C T IZUMO2 Missense_Mutation p.R52H 0.08 deleterious(0.03) possibly_damaging(0.715) TCGA-CN-5374-01 19 53958797 53958797 C T ZNF761 RNA 0.20 TCGA-CN-5374-01 19 54189764 54189764 C G MIR519C RNA 0.12 TCGA-CN-5374-01 19 54445546 54445546 G A CACNG7 Silent p.%3D 0.18 TCGA-CN-5374-01 19 57889733 57889733 A G ZNF547 3'UTR 0.29 TCGA-CN-5374-01 19 58059066 58059066 G T ZNF550 Silent p.L141L 0.04 TCGA-CN-5374-01 19 8156457 8156457 C G FBN3 Missense_Mutation p.E1975Q 0.14 tolerated(0.1) benign(0.396) TCGA-CN-5374-01 19 9067136 9067136 C T MUC16 Silent p.Q6770Q 0.39 TCGA-CN-5374-01 19 9076191 9076191 G A MUC16 Missense_Mutation p.S3752L 0.34 unknown(0) TCGA-CN-5374-01 1 100357191 100357191 C T AGL Silent p.F993F 0.13 TCGA-CN-5374-01 1 108735216 108735216 A G SLC25A24 Intron 0.57 TCGA-CN-5374-01 1 11718444 11718444 C T FBXO44 Missense_Mutation p.S129L 0.10 deleterious(0.01) probably_damaging(0.916) TCGA-CN-5374-01 1 12887625 12887625 C T PRAMEF11 Missense_Mutation p.E78K 0.04 deleterious(0.02) possibly_damaging(0.648) TCGA-CN-5374-01 1 149859051 149859051 G A HIST2H2AB 3'UTR 0.05 TCGA-CN-5374-01 1 155174872 155174872 C T THBS3 Silent p.Q174Q 0.31 TCGA-CN-5374-01 1 183546795 183546795 C G NCF2 Missense_Mutation p.R102P 0.12 deleterious(0) possibly_damaging(0.893) TCGA-CN-5374-01 1 201016272 201016272 G A CACNA1S Missense_Mutation p.R1547W 0.30 deleterious(0) probably_damaging(0.993) TCGA-CN-5374-01 1 211192356 211192356 G A KCNH1 Silent p.L267L 0.11 TCGA-CN-5374-01 1 21585219 21585219 G C ECE1 Silent p.A243A 0.06 TCGA-CN-5374-01 1 237868594 237868594 A G RYR2 Silent p.K3177K 0.48 TCGA-CN-5374-01 1 29447769 29447769 G C TMEM200B Missense_Mutation p.P191R 0.45 tolerated(0.3) benign(0.001) TCGA-CN-5374-01 1 48918776 48918776 C G SPATA6 Missense_Mutation p.D27H 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-CN-5374-01 1 6418992 6418992 C T ACOT7 Intron 0.36 TCGA-CN-5374-01 1 78428560 78428560 C G FUBP1 Missense_Mutation p.Q413H 0.11 deleterious(0.01) probably_damaging(0.95) TCGA-CN-5374-01 20 17716467 17716467 C T BANF2 3'UTR 0.12 TCGA-CN-5374-01 20 39744053 39744053 G T TOP1 Nonsense_Mutation p.E561* 0.14 TCGA-CN-5374-01 20 42163513 42163513 G A L3MBTL1 Missense_Mutation p.A564T 0.10 tolerated(0.19) benign(0.207) TCGA-CN-5374-01 20 43379005 43379005 C T KCNK15 Silent p.L173L 0.18 TCGA-CN-5374-01 20 47309258 47309258 G A PREX1 Nonsense_Mutation p.R330* 0.10 TCGA-CN-5374-01 20 47639640 47639640 G T ARFGEF2 Missense_Mutation p.L1559F 0.04 deleterious(0) possibly_damaging(0.692) TCGA-CN-5374-01 20 51873085 51873085 G C TSHZ2 Missense_Mutation p.D1030H 0.03 deleterious(0) probably_damaging(0.933) TCGA-CN-5374-01 20 57769147 57769147 G A ZNF831 Missense_Mutation p.D1025N 0.07 deleterious(0.01) benign(0.17) TCGA-CN-5374-01 20 62616302 62616302 G A PRPF6 Missense_Mutation p.E95K 0.17 deleterious(0) benign(0.36) TCGA-CN-5374-01 22 24718349 24718349 C T SPECC1L Silent p.R467R 0.16 TCGA-CN-5374-01 22 25155901 25155901 G A PIWIL3 Missense_Mutation p.P53L 0.15 tolerated(0.41) benign(0.122) TCGA-CN-5374-01 22 26286822 26286822 C T MYO18B Missense_Mutation p.R1472W 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-5374-01 22 37892475 37892475 G A CARD10 Silent p.P680P 0.18 TCGA-CN-5374-01 22 39811028 39811028 G T TAB1 Missense_Mutation p.W17C 0.24 deleterious(0) probably_damaging(0.995) TCGA-CN-5374-01 22 44360402 44360402 G C SAMM50 Missense_Mutation p.G68A 0.12 tolerated(0.85) benign(0) TCGA-CN-5374-01 2 101188229 101188229 G A PDCL3 Silent p.L182L 0.05 TCGA-CN-5374-01 2 105708870 105708870 C T MRPS9 Silent p.F221F 0.17 TCGA-CN-5374-01 2 128477169 128477169 C T WDR33 Missense_Mutation p.M810I 0.11 tolerated_low_confidence(0.36) benign(0.006) TCGA-CN-5374-01 2 142888281 142888281 G C LRP1B Silent p.L6L 0.24 TCGA-CN-5374-01 2 18765901 18765901 C T NT5C1B Missense_Mutation p.R261H 0.12 tolerated_low_confidence(0.42) benign(0.002) TCGA-CN-5374-01 2 197656160 197656160 G A GTF3C3 Missense_Mutation p.P146S 0.06 deleterious(0) possibly_damaging(0.904) TCGA-CN-5374-01 2 204732606 204732606 C T CTLA4 5'UTR 0.20 TCGA-CN-5374-01 2 216292957 216292957 C T FN1 Missense_Mutation p.G264S 0.31 deleterious(0.01) probably_damaging(1) TCGA-CN-5374-01 2 218954013 218954013 C G RUFY4 Missense_Mutation p.S534C 0.10 deleterious(0) probably_damaging(0.963) TCGA-CN-5374-01 2 242196114 242196114 G A HDLBP Silent p.I186I 0.04 TCGA-CN-5374-01 2 25042974 25042974 C T ADCY3 Missense_Mutation p.E1088K 0.09 deleterious(0.01) possibly_damaging(0.754) TCGA-CN-5374-01 2 33487804 33487804 G C LTBP1 Missense_Mutation p.D812H 0.09 deleterious(0.01) benign(0.146) TCGA-CN-5374-01 2 33809952 33809952 C T FAM98A Missense_Mutation p.R483K 0.13 deleterious_low_confidence(0.03) unknown(0) TCGA-CN-5374-01 2 80530589 80530589 G A LRRTM1 Missense_Mutation p.T119M 0.24 deleterious(0.02) possibly_damaging(0.636) TCGA-CN-5374-01 2 9770603 9770603 G T YWHAQ 5'UTR 0.21 TCGA-CN-5374-01 3 119367500 119367500 C T POPDC2 Missense_Mutation p.E206K 0.10 deleterious(0) probably_damaging(0.997) TCGA-CN-5374-01 3 119434506 119434506 G A MAATS1 Missense_Mutation p.V200I 0.11 tolerated(0.07) benign(0.008) TCGA-CN-5374-01 3 133476692 133476692 C G TF Missense_Mutation p.S317C 0.10 deleterious(0) probably_damaging(0.974) TCGA-CN-5374-01 3 146171886 146171886 A G PLSCR2 Missense_Mutation p.L202P 0.07 deleterious(0.01) probably_damaging(0.967) TCGA-CN-5374-01 3 15084311 15084311 C G NR2C2 Intron 0.26 TCGA-CN-5374-01 3 154886339 154886339 T G MME Missense_Mutation p.S613R 0.23 tolerated(0.36) benign(0) TCGA-CN-5374-01 3 155203166 155203166 C T PLCH1 Missense_Mutation p.E993K 0.06 tolerated_low_confidence(1) benign(0.001) TCGA-CN-5374-01 3 19961420 19961420 G A EFHB Missense_Mutation p.P301S 0.16 deleterious(0.05) benign(0.022) TCGA-CN-5374-01 3 28520338 28520338 A G ZCWPW2 Missense_Mutation p.K176E 0.11 tolerated(0.25) benign(0.003) TCGA-CN-5374-01 3 38105339 38105339 G T DLEC1 Missense_Mutation p.D368Y 0.11 deleterious(0.03) possibly_damaging(0.476) TCGA-CN-5374-01 3 52850976 52850976 C G ITIH4 Missense_Mutation p.E799Q 0.14 deleterious(0.03) possibly_damaging(0.864) TCGA-CN-5374-01 3 86996000 86996000 C T VGLL3 3'UTR 0.27 TCGA-CN-5374-01 3 9711137 9711137 C A MTMR14 Missense_Mutation p.A172E 0.13 tolerated(0.17) benign(0.212) TCGA-CN-5374-01 3 9798572 9798572 G A OGG1 Intron 0.21 TCGA-CN-5374-01 4 156638419 156638419 G C GUCY1A3 Missense_Mutation p.D561H 0.20 deleterious(0.03) benign(0.008) TCGA-CN-5374-01 4 164272702 164272702 G T NPY5R Missense_Mutation p.G426V 0.15 deleterious(0) probably_damaging(1) TCGA-CN-5374-01 4 1730363 1730363 G A TACC3 Missense_Mutation p.D412N 0.19 deleterious(0.04) possibly_damaging(0.545) TCGA-CN-5374-01 4 189026443 189026443 C T TRIML2 5'UTR 0.32 TCGA-CN-5374-01 4 6064157 6064157 C T JAKMIP1 Missense_Mutation p.R481Q 0.21 deleterious(0.02) possibly_damaging(0.546) TCGA-CN-5374-01 5 109152986 109152986 C G MAN2A1 Silent p.V652V 0.12 TCGA-CN-5374-01 5 141336463 141336463 G A PCDH12 Silent p.Y318Y 0.15 TCGA-CN-5374-01 5 167645855 167645855 C G TENM2 Missense_Mutation p.D1653E 0.10 tolerated(0.22) benign(0.029) TCGA-CN-5374-01 5 176524631 176524631 C T FGFR4 Missense_Mutation p.P788L 0.13 deleterious(0.01) unknown(0) TCGA-CN-5374-01 5 32783030 32783030 G A NPR3 Missense_Mutation p.R441H 0.25 tolerated(0.12) benign(0) TCGA-CN-5374-01 5 3599879 3599879 G A IRX1 Missense_Mutation p.D273N 0.38 tolerated(0.08) benign(0.1) TCGA-CN-5374-01 5 54275189 54275189 C T ESM1 Missense_Mutation p.V176I 0.15 tolerated(0.43) benign(0.021) TCGA-CN-5374-01 6 10621646 10621646 G A GCNT2 Missense_Mutation p.D330N 0.11 tolerated(0.22) possibly_damaging(0.855) TCGA-CN-5374-01 6 106973015 106973015 G C AIM1 Missense_Mutation p.R1010T 0.04 tolerated(0.09) possibly_damaging(0.748) TCGA-CN-5374-01 6 107955074 107955074 C T SOBP Silent p.V342V 0.15 TCGA-CN-5374-01 6 125231447 125231447 G C RP11-510H23.1 RNA 0.10 TCGA-CN-5374-01 6 145118996 145118996 A C UTRN Missense_Mutation p.I3039L 0.13 tolerated(0.82) benign(0.192) TCGA-CN-5374-01 6 151766520 151766520 G A RMND1 Nonsense_Mutation p.Q143* 0.32 TCGA-CN-5374-01 6 155131214 155131214 C G SCAF8 Nonsense_Mutation p.S431* 0.14 TCGA-CN-5374-01 6 165746557 165746557 G A PDE10A Missense_Mutation p.S776L 0.14 deleterious_low_confidence(0.05) benign(0.006) TCGA-CN-5374-01 6 166796324 166796324 C T MPC1 Missense_Mutation p.R14Q 0.10 tolerated(0.09) benign(0.028) TCGA-CN-5374-01 6 17764821 17764821 C T KIF13A Silent p.P1646P 0.11 TCGA-CN-5374-01 6 17797042 17797042 C A KIF13A Missense_Mutation p.V934L 0.14 deleterious(0.03) probably_damaging(0.992) TCGA-CN-5374-01 6 27839826 27839826 C A HIST1H3I Missense_Mutation p.V90L 0.04 tolerated_low_confidence(0.12) benign(0.022) TCGA-CN-5374-01 6 28056699 28056699 G C ZNF165 Missense_Mutation p.W303C 0.31 tolerated(0.09) probably_damaging(0.98) TCGA-CN-5374-01 6 43006428 43006428 C T CUL7 Silent p.A1565A 0.10 TCGA-CN-5374-01 6 43590532 43590532 G A GTPBP2 Silent p.C435C 0.06 TCGA-CN-5374-01 6 46657374 46657374 G A TDRD6 Nonsense_Mutation p.W503* 0.11 TCGA-CN-5374-01 6 56473649 56473649 G C DST Intron 0.12 TCGA-CN-5374-01 6 91257806 91257806 C T MAP3K7 Missense_Mutation p.R347H 0.05 tolerated(0.21) possibly_damaging(0.861) TCGA-CN-5374-01 6 96054094 96054094 C G MANEA Missense_Mutation p.S401C 0.09 deleterious(0) probably_damaging(0.999) TCGA-CN-5374-01 7 107236385 107236385 C G BCAP29 Missense_Mutation p.Q140E 0.12 tolerated(0.08) possibly_damaging(0.47) TCGA-CN-5374-01 7 112724579 112724579 A G GPR85 Silent p.D66D 0.11 TCGA-CN-5374-01 7 117067495 117067495 C T ASZ1 Missense_Mutation p.R7Q 0.19 tolerated(0.34) benign(0.189) TCGA-CN-5374-01 7 127222112 127222112 G A GCC1 Nonsense_Mutation p.R762* 0.19 TCGA-CN-5374-01 7 143020477 143020477 G C CLCN1 Missense_Mutation p.E258Q 0.05 tolerated(0.12) possibly_damaging(0.629) TCGA-CN-5374-01 7 150439815 150439815 G C GIMAP5 Missense_Mutation p.Q196H 0.26 deleterious(0) probably_damaging(1) TCGA-CN-5374-01 7 20198241 20198241 G A MACC1 Silent p.L581L 0.04 TCGA-CN-5374-01 7 21550789 21550789 G A SP4 Missense_Mutation p.E753K 0.19 tolerated(0.31) benign(0.073) TCGA-CN-5374-01 7 32957058 32957058 C G RP9P RNA 0.19 TCGA-CN-5374-01 7 6732045 6732045 G C ZNF12 Silent p.L176L 0.11 TCGA-CN-5374-01 7 94881081 94881081 G C PPP1R9A Missense_Mutation p.D802H 0.11 deleterious(0.01) probably_damaging(0.952) TCGA-CN-5374-01 8 10465038 10465038 C T RP1L1 Silent p.Q2190Q 0.05 TCGA-CN-5374-01 8 113323263 113323263 C A CSMD3 Missense_Mutation p.C2610F 0.11 deleterious(0) probably_damaging(0.992) TCGA-CN-5374-01 8 139163666 139163666 C G FAM135B Missense_Mutation p.E1018Q 0.36 deleterious(0) benign(0.313) TCGA-CN-5374-01 8 140631107 140631107 G A KCNK9 Silent p.I173I 0.14 TCGA-CN-5374-01 8 146277843 146277843 T C C8orf33 5'UTR 0.24 TCGA-CN-5374-01 8 1497551 1497551 C T DLGAP2 Missense_Mutation p.T231M 0.15 tolerated(0.11) possibly_damaging(0.677) TCGA-CN-5374-01 8 55541429 55541429 G A RP1 Missense_Mutation p.E1663K 0.24 tolerated(0.09) possibly_damaging(0.451) TCGA-CN-5374-01 8 62588526 62588526 C T ASPH Intron 0.19 TCGA-CN-5374-01 8 86037161 86037161 A C LRRCC1 Missense_Mutation p.D420A 0.29 deleterious(0.03) benign(0.103) TCGA-CN-5374-01 9 100971416 100971416 C T TBC1D2 Missense_Mutation p.E562K 0.15 tolerated(0.1) possibly_damaging(0.46) TCGA-CN-5374-01 9 113220760 113220760 G A SVEP1 Silent p.I1189I 0.11 TCGA-CN-5374-01 9 114304895 114304895 C T ZNF483 Silent p.F560F 0.10 TCGA-CN-5374-01 9 114304990 114304990 C T ZNF483 Missense_Mutation p.S592L 0.11 deleterious(0) benign(0.307) TCGA-CN-5374-01 9 115626607 115626607 G A SNX30 Silent p.Q394Q 0.18 TCGA-CN-5374-01 9 12704633 12704633 G T TYRP1 Missense_Mutation p.D397Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-CN-5374-01 9 129975312 129975312 G A RALGPS1 Silent p.L512L 0.30 TCGA-CN-5374-01 9 136578232 136578232 C G SARDH Missense_Mutation p.D389H 0.23 deleterious(0) probably_damaging(1) TCGA-CN-5374-01 9 136906945 136906945 C T BRD3 Silent p.S448S 0.20 TCGA-CN-5374-01 9 139273401 139273401 C T SNAPC4 Missense_Mutation p.A960T 0.25 tolerated(0.22) benign(0.016) TCGA-CN-5374-01 9 95050073 95050073 C T IARS Silent p.K132K 0.15 TCGA-CN-5374-01 9 95405069 95405069 C T IPPK Silent p.Q176Q 0.10 TCGA-CN-5374-01 X 106882553 106882553 G C PRPS1 Missense_Mutation p.E51Q 0.16 tolerated(0.09) benign(0.428) TCGA-CN-5374-01 X 111698890 111698890 G C ZCCHC16 3'UTR 0.18 TCGA-CN-5374-01 X 118284511 118284511 G A KIAA1210 Missense_Mutation p.S11F 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.557) TCGA-CN-5374-01 X 123517613 123517613 C T TENM1 Missense_Mutation p.G2390S 0.31 deleterious(0.03) probably_damaging(0.994) TCGA-CN-5374-01 X 14883405 14883405 G C FANCB Missense_Mutation p.I76M 0.05 tolerated(0.19) possibly_damaging(0.861) TCGA-CN-5374-01 X 46951163 46951163 G C RGN Missense_Mutation p.A217P 0.04 deleterious(0.04) probably_damaging(0.91) TCGA-CN-5374-01 X 77359790 77359790 C G PGK1 5'UTR 0.24 TCGA-CN-5374-01 X 78010407 78010407 C G LPAR4 Nonsense_Mutation p.S14* 0.18 TCGA-CN-5374-01 X 86068141 86068141 G A DACH2 Silent p.L466L 0.15 TCGA-CN-6010-01 10 108469071 108469071 C A SORCS1 Missense_Mutation p.Q351H 0.22 tolerated(0.32) benign(0.333) TCGA-CN-6010-01 10 108469072 108469072 T G SORCS1 Missense_Mutation p.Q351P 0.21 tolerated(0.09) probably_damaging(0.983) TCGA-CN-6010-01 10 12001252 12001253 - T UPF2 Frame_Shift_Ins p.T763Nfs*23 0.17 TCGA-CN-6010-01 10 16870832 16870832 G A CUBN Missense_Mutation p.S3579F 0.13 tolerated(0.13) benign(0.111) TCGA-CN-6010-01 10 49409355 49409355 T A FRMPD2 Missense_Mutation p.S624C 0.10 tolerated(1) benign(0.001) TCGA-CN-6010-01 11 107682478 107682478 T A SLC35F2 Missense_Mutation p.K110M 0.21 deleterious(0) possibly_damaging(0.908) TCGA-CN-6010-01 11 22279232 22279232 G A ANO5 Missense_Mutation p.E447K 0.37 deleterious(0) possibly_damaging(0.547) TCGA-CN-6010-01 11 3726504 3726504 G A NUP98 Missense_Mutation p.A1003V 0.29 tolerated(0.31) benign(0.108) TCGA-CN-6010-01 11 58206944 58206944 G C OR5B12 Silent p.R227R 0.06 TCGA-CN-6010-01 11 59271552 59271552 C A OR4D11 Missense_Mutation p.F168L 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-6010-01 11 62287710 62287710 C T AHNAK Missense_Mutation p.D4727N 0.09 probably_damaging(0.999) TCGA-CN-6010-01 11 62297926 62297926 G T AHNAK Silent p.P1321P 0.29 TCGA-CN-6010-01 11 65810581 65810581 C T GAL3ST3 Silent p.V231V 0.17 TCGA-CN-6010-01 11 71146483 71146483 C T DHCR7 Missense_Mutation p.G456S 0.22 deleterious(0) possibly_damaging(0.893) TCGA-CN-6010-01 12 11035684 11035684 C A PRH1 Nonsense_Mutation p.E26* 0.22 TCGA-CN-6010-01 12 11420146 11420146 G C PRB3 Missense_Mutation p.Q304E 0.29 deleterious_low_confidence(0) unknown(0) TCGA-CN-6010-01 12 2787036 2787036 G T CACNA1C Intron 0.34 TCGA-CN-6010-01 12 32135423 32135423 A T KIAA1551 Nonsense_Mutation p.K512* 0.15 TCGA-CN-6010-01 12 34175620 34175620 G T ALG10 Missense_Mutation p.R29L 0.08 deleterious(0.02) possibly_damaging(0.831) TCGA-CN-6010-01 12 4835909 4835909 G C GALNT8 Missense_Mutation p.Q141H 0.16 tolerated(0.06) possibly_damaging(0.789) TCGA-CN-6010-01 12 54744287 54744287 A G COPZ1 Missense_Mutation p.K172E 0.07 tolerated(0.05) benign(0.049) TCGA-CN-6010-01 12 62938684 62938684 C T MON2 Nonsense_Mutation p.Q825* 0.22 TCGA-CN-6010-01 12 6495602 6495602 A G LTBR Missense_Mutation p.E220G 0.43 deleterious(0) possibly_damaging(0.451) TCGA-CN-6010-01 12 66770984 66770984 G A GRIP1 Silent p.C849C 0.17 TCGA-CN-6010-01 12 82870447 82870447 T A METTL25 Missense_Mutation p.Y533N 0.15 deleterious(0) probably_damaging(0.999) TCGA-CN-6010-01 13 38138655 38138655 C T POSTN Splice_Site p.X825_splice 0.22 TCGA-CN-6010-01 14 101421764 101421764 C T SNORD114-5 RNA 0.23 TCGA-CN-6010-01 14 105930441 105930441 G T MTA1 Silent p.P383P 0.28 TCGA-CN-6010-01 14 21874023 21874023 C A CHD8 Nonsense_Mutation p.E970* 0.35 TCGA-CN-6010-01 14 24798654 24798654 A - ADCY4 Frame_Shift_Del p.Y435Tfs*5 0.13 TCGA-CN-6010-01 14 53527915 53527915 T C DDHD1 Missense_Mutation p.K591E 0.16 deleterious(0.03) benign(0.017) TCGA-CN-6010-01 14 58060704 58060704 C A SLC35F4 Missense_Mutation p.G117V 0.16 deleterious(0.01) benign(0.151) TCGA-CN-6010-01 14 64443439 64443439 A T SYNE2 Missense_Mutation p.L429F 0.09 possibly_damaging(0.754) TCGA-CN-6010-01 14 70989276 70989276 T C ADAM20 3'UTR 0.30 TCGA-CN-6010-01 14 95234883 95234883 G A GSC Missense_Mutation p.A240V 0.10 tolerated_low_confidence(0.36) benign(0.002) TCGA-CN-6010-01 14 96864496 96864496 C A AK7 Missense_Mutation p.L64M 0.16 tolerated(0.25) benign(0.129) TCGA-CN-6010-01 15 43585695 43585695 G T TGM7 Silent p.R49R 0.33 TCGA-CN-6010-01 15 45406945 45406945 C T DUOXA2 Missense_Mutation p.H48Y 0.09 deleterious(0.04) possibly_damaging(0.808) TCGA-CN-6010-01 15 86253831 86253831 G T AKAP13 Missense_Mutation p.A1856S 0.10 tolerated(0.09) possibly_damaging(0.601) TCGA-CN-6010-01 15 90347556 90347556 G A ANPEP Silent p.F369F 0.20 TCGA-CN-6010-01 16 15157137 15157137 T G RRN3 Silent p.S570S 0.16 TCGA-CN-6010-01 16 15835439 15835439 C T MYH11 Missense_Mutation p.A921T 0.19 benign(0.11) TCGA-CN-6010-01 16 22360714 22360714 C T CDR2 Missense_Mutation p.S131N 0.30 tolerated(0.49) benign(0.005) TCGA-CN-6010-01 16 51173271 51173271 G A SALL1 Silent p.S954S 0.37 TCGA-CN-6010-01 16 65005485 65005485 G A CDH11 Nonsense_Mutation p.R547* 0.15 TCGA-CN-6010-01 16 76501310 76501310 T A CNTNAP4 Nonsense_Mutation p.C442* 0.28 TCGA-CN-6010-01 17 30621436 30621436 C A RHBDL3 Missense_Mutation p.L215M 0.19 tolerated(0.06) possibly_damaging(0.882) TCGA-CN-6010-01 17 34072760 34072760 G A GAS2L2 Missense_Mutation p.R586W 0.14 tolerated(0.13) possibly_damaging(0.507) TCGA-CN-6010-01 17 34185928 34185928 C T C17orf66 Silent p.Q301Q 0.13 TCGA-CN-6010-01 17 40275302 40275302 C T HSPB9 Missense_Mutation p.P145L 0.21 tolerated(0.27) benign(0.002) TCGA-CN-6010-01 17 40766632 40766632 G A TUBG1 Missense_Mutation p.R372Q 0.24 tolerated(0.05) benign(0.262) TCGA-CN-6010-01 17 7017444 7017444 A G ASGR2 Missense_Mutation p.F39S 0.17 tolerated(0.14) benign(0.009) TCGA-CN-6010-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.38 TCGA-CN-6010-01 17 78319551 78319551 C T RNF213 Silent p.F2472F 0.19 TCGA-CN-6010-01 18 47421488 47421488 G C MYO5B Silent p.T956T 0.07 TCGA-CN-6010-01 18 8143677 8143677 G A PTPRM Missense_Mutation p.E734K 0.16 tolerated(0.1) benign(0.362) TCGA-CN-6010-01 19 10610177 10610177 T A KEAP1 Missense_Mutation p.Q178L 0.35 deleterious(0) possibly_damaging(0.872) TCGA-CN-6010-01 19 16977273 16977273 C - SIN3B Frame_Shift_Del p.D605Tfs*5 0.32 TCGA-CN-6010-01 19 17476149 17476149 G T PLVAP Silent p.L375L 0.27 TCGA-CN-6010-01 19 19416690 19416690 T C SUGP1 Missense_Mutation p.E169G 0.16 deleterious(0) possibly_damaging(0.873) TCGA-CN-6010-01 19 23543928 23543928 C G ZNF91 Missense_Mutation p.R618T 0.08 tolerated(1) benign(0.005) TCGA-CN-6010-01 19 43262160 43262160 G A PSG8 Missense_Mutation p.L235F 0.17 deleterious(0.01) benign(0.14) TCGA-CN-6010-01 19 436383 436383 T C SHC2 Missense_Mutation p.R275G 0.36 deleterious(0) probably_damaging(0.975) TCGA-CN-6010-01 19 52383578 52383578 C G ZNF577 Missense_Mutation p.E20Q 0.17 tolerated(1) benign(0.046) TCGA-CN-6010-01 19 52394790 52394790 T C ZNF649 Missense_Mutation p.H200R 0.20 deleterious(0) benign(0.079) TCGA-CN-6010-01 19 54183211 54183211 C A MIR519E RNA 0.16 TCGA-CN-6010-01 19 54746049 54746049 C A LILRA6 Missense_Mutation p.D70Y 0.11 tolerated(0.14) benign(0.273) TCGA-CN-6010-01 19 55718094 55718094 T A PTPRH Silent p.G105G 0.15 TCGA-CN-6010-01 19 57328305 57328305 C T PEG3 Missense_Mutation p.G502E 0.16 deleterious(0.01) possibly_damaging(0.829) TCGA-CN-6010-01 1 104163218 104163218 G T AMY2A Missense_Mutation p.G264C 0.20 deleterious(0.01) possibly_damaging(0.864) TCGA-CN-6010-01 1 114454676 114454676 A G DCLRE1B Missense_Mutation p.K488E 0.24 tolerated_low_confidence(0.11) benign(0.002) TCGA-CN-6010-01 1 12920063 12920063 A G PRAMEF2 Missense_Mutation p.H268R 0.16 deleterious(0.04) probably_damaging(0.922) TCGA-CN-6010-01 1 152277266 152277266 G C FLG Missense_Mutation p.Q3366E 0.11 unknown(0) TCGA-CN-6010-01 1 152777761 152777761 C A LCE1C Missense_Mutation p.G65V 0.14 tolerated_low_confidence(0.24) unknown(0) TCGA-CN-6010-01 1 161123772 161123772 T C UFC1 5'UTR 0.41 TCGA-CN-6010-01 1 177250578 177250578 G T BRINP2 Missense_Mutation p.V756L 0.10 deleterious(0.01) benign(0.137) TCGA-CN-6010-01 1 183895366 183895366 G A RGL1 Silent p.T784T 0.43 TCGA-CN-6010-01 1 186839595 186839595 C T PLA2G4A Missense_Mutation p.T21M 0.24 tolerated(0.08) benign(0.354) TCGA-CN-6010-01 1 21564651 21564651 G A ECE1 Silent p.T455T 0.28 TCGA-CN-6010-01 1 224607315 224607315 T C WDR26 Missense_Mutation p.Y256C 0.51 tolerated(0.07) benign(0.064) TCGA-CN-6010-01 1 235346105 235346105 G A ARID4B Missense_Mutation p.S710F 0.19 deleterious(0) probably_damaging(0.996) TCGA-CN-6010-01 1 244574694 244574694 G T ADSS Missense_Mutation p.L405I 0.13 deleterious(0.02) possibly_damaging(0.59) TCGA-CN-6010-01 1 248004731 248004731 G A OR11L1 Silent p.G156G 0.19 TCGA-CN-6010-01 1 248525876 248525876 G C OR2T4 Missense_Mutation p.A332P 0.20 deleterious(0) probably_damaging(0.939) TCGA-CN-6010-01 1 32165642 32165642 C T COL16A1 Missense_Mutation p.G50S 0.33 unknown(0) TCGA-CN-6010-01 1 32264059 32264059 C T SPOCD1 Missense_Mutation p.R671Q 0.32 deleterious(0.02) possibly_damaging(0.903) TCGA-CN-6010-01 1 47564902 47564902 A G CYP4Z1 Missense_Mutation p.Q338R 0.08 tolerated(0.05) possibly_damaging(0.728) TCGA-CN-6010-01 1 53569073 53569073 C G SLC1A7 Silent p.P214P 0.33 TCGA-CN-6010-01 1 85395292 85395292 T A MCOLN2 Missense_Mutation p.E538V 0.20 tolerated(0.09) benign(0.01) TCGA-CN-6010-01 1 89426943 89426943 T C CCBL2 Missense_Mutation p.I232V 0.15 tolerated(0.3) benign(0.277) TCGA-CN-6010-01 20 21336733 21336733 T C XRN2 Missense_Mutation p.L679P 0.11 tolerated(0.19) possibly_damaging(0.837) TCGA-CN-6010-01 20 44003805 44003805 C T TP53TG5 Silent p.L214L 0.27 TCGA-CN-6010-01 21 38516833 38516833 A C TTC3 Missense_Mutation p.E594A 0.23 deleterious(0.05) possibly_damaging(0.845) TCGA-CN-6010-01 21 46702266 46702267 - GCACTCACCGT POFUT2 Nonsense_Mutation p.S214* 0.15 TCGA-CN-6010-01 22 29195954 29195960 TCCGAGT - XBP1 Intron 0.20 TCGA-CN-6010-01 22 29885318 29885318 G T NEFH Missense_Mutation p.E563D 0.13 deleterious(0.01) unknown(0) TCGA-CN-6010-01 2 116510785 116510785 A T DPP10 Missense_Mutation p.N333I 0.20 deleterious(0.01) possibly_damaging(0.705) TCGA-CN-6010-01 2 1251206 1251231 CACTCCTCCGGTAAGGATGCTTTTGA - SNTG2 Splice_Site p.X334_splice 0.08 TCGA-CN-6010-01 2 168107879 168107879 T A XIRP2 Missense_Mutation p.V3326E 0.08 benign(0.299) TCGA-CN-6010-01 2 189916144 189916144 C A COL5A2 Missense_Mutation p.G945W 0.11 unknown(0) TCGA-CN-6010-01 2 207651558 207651558 A T FASTKD2 Missense_Mutation p.Y510F 0.31 deleterious(0.01) possibly_damaging(0.816) TCGA-CN-6010-01 2 209200049 209200049 C T PIKFYVE Missense_Mutation p.L1388F 0.34 deleterious(0.05) possibly_damaging(0.749) TCGA-CN-6010-01 2 211539654 211539654 T A CPS1 Missense_Mutation p.V1383E 0.13 tolerated(0.08) benign(0.006) TCGA-CN-6010-01 2 216199650 216199650 A G ATIC Missense_Mutation p.R311G 0.16 deleterious(0.02) possibly_damaging(0.621) TCGA-CN-6010-01 2 227920692 227920692 A G COL4A4 Silent p.D895D 0.20 TCGA-CN-6010-01 2 228173948 228173948 G A COL4A3 Missense_Mutation p.A1557T 0.20 unknown(0) TCGA-CN-6010-01 2 234296984 234296984 C T DGKD Nonsense_Mutation p.R80* 0.30 TCGA-CN-6010-01 2 240061464 240061464 G A HDAC4 Silent p.S298S 0.37 TCGA-CN-6010-01 2 3405563 3405563 G C TRAPPC12 Missense_Mutation p.D355H 0.11 deleterious(0) possibly_damaging(0.558) TCGA-CN-6010-01 2 73826530 73826530 A G ALMS1 Silent p.V3849V 0.16 TCGA-CN-6010-01 3 123665745 123665745 T A CCDC14 Missense_Mutation p.D376V 0.15 deleterious(0.04) probably_damaging(0.972) TCGA-CN-6010-01 3 12977740 12977740 G A IQSEC1 Missense_Mutation p.A273V 0.24 tolerated(0.53) benign(0.001) TCGA-CN-6010-01 3 140251222 140251222 C A CLSTN2 Silent p.T467T 0.11 TCGA-CN-6010-01 3 170858204 170858204 C A TNIK Missense_Mutation p.R439L 0.21 tolerated(0.09) unknown(0) TCGA-CN-6010-01 3 180321093 180321093 A T TTC14 Silent p.I156I 0.09 TCGA-CN-6010-01 3 193166098 193166098 C G ATP13A4 Silent p.L683L 0.25 TCGA-CN-6010-01 3 19498349 19498349 C A KCNH8 Missense_Mutation p.L639I 0.28 deleterious(0) probably_damaging(0.995) TCGA-CN-6010-01 3 39227609 39227609 C A XIRP1 Missense_Mutation p.D1110Y 0.30 deleterious(0) probably_damaging(0.937) TCGA-CN-6010-01 3 42632367 42632367 C G SS18L2 5'UTR 0.26 TCGA-CN-6010-01 3 44636533 44636533 T A ZNF660 Missense_Mutation p.F283Y 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-CN-6010-01 3 62153671 62153671 C T PTPRG Silent p.T289T 0.12 TCGA-CN-6010-01 4 134072296 134072296 G T PCDH10 Missense_Mutation p.G334V 0.20 deleterious(0) probably_damaging(1) TCGA-CN-6010-01 4 16760797 16760797 A G LDB2 Silent p.D73D 0.16 TCGA-CN-6010-01 4 187455231 187455231 T A MTNR1A Missense_Mutation p.K222I 0.15 deleterious(0) benign(0.405) TCGA-CN-6010-01 4 95506073 95506073 T C PDLIM5 Intron 0.11 TCGA-CN-6010-01 5 131714117 131714117 C T SLC22A5 Silent p.S147S 0.14 TCGA-CN-6010-01 5 139060331 139060331 C T CXXC5 Missense_Mutation p.R75C 0.23 deleterious(0) possibly_damaging(0.543) TCGA-CN-6010-01 5 140202711 140202711 G A PCDHA5 Missense_Mutation p.A451T 0.32 deleterious_low_confidence(0.02) benign(0.334) TCGA-CN-6010-01 5 140216085 140216085 C T PCDHA7 Missense_Mutation p.A706V 0.28 deleterious_low_confidence(0.02) benign(0.038) TCGA-CN-6010-01 5 140216146 140216146 G A PCDHA7 Silent p.P726P 0.39 TCGA-CN-6010-01 5 140579439 140579439 G A PCDHB11 Nonsense_Mutation p.W31* 0.20 TCGA-CN-6010-01 5 140735676 140735676 A T PCDHGA4 Silent p.I303I 0.21 TCGA-CN-6010-01 5 140788007 140788007 G C PCDHGB6 Missense_Mutation p.E80Q 0.33 tolerated(0.06) benign(0.12) TCGA-CN-6010-01 5 154179306 154179306 C T LARP1 Silent p.Y434Y 0.39 TCGA-CN-6010-01 5 154394225 154394225 G A KIF4B Missense_Mutation p.C269Y 0.21 deleterious(0) probably_damaging(0.974) TCGA-CN-6010-01 5 156469687 156469687 T C HAVCR1 Missense_Mutation p.N263S 0.17 tolerated(0.12) benign(0.02) TCGA-CN-6010-01 5 171639129 171639129 T C UBTD2 Missense_Mutation p.E137G 0.54 deleterious(0.01) benign(0.045) TCGA-CN-6010-01 5 35641632 35641632 A C SPEF2 Silent p.T87T 0.10 TCGA-CN-6010-01 5 36141228 36141228 T C LMBRD2 Missense_Mutation p.T117A 0.22 deleterious(0) possibly_damaging(0.73) TCGA-CN-6010-01 5 63509383 63509383 A T RNF180 Splice_Site p.X78_splice 0.21 TCGA-CN-6010-01 5 90004696 90004696 G T GPR98 Missense_Mutation p.A2932S 0.37 probably_damaging(0.935) TCGA-CN-6010-01 6 10529734 10529734 T C GCNT2 Missense_Mutation p.L197P 0.17 deleterious(0) probably_damaging(0.998) TCGA-CN-6010-01 6 118790380 118790380 T C CEP85L Silent p.K706K 0.22 TCGA-CN-6010-01 6 155632378 155632378 C A TFB1M Missense_Mutation p.D77Y 0.26 deleterious(0.01) possibly_damaging(0.637) TCGA-CN-6010-01 6 28227756 28227756 G C NKAPL Missense_Mutation p.D203H 0.28 tolerated(0.07) unknown(0) TCGA-CN-6010-01 6 39282957 39282957 G A KCNK16 Silent p.L304L 0.17 TCGA-CN-6010-01 7 100681270 100681270 T C MUC17 Silent p.P2191P 0.10 TCGA-CN-6010-01 7 102574878 102574878 C T LRRC17 Missense_Mutation p.T173M 0.10 deleterious(0.01) possibly_damaging(0.614) TCGA-CN-6010-01 7 103207105 103207105 G C RELN Missense_Mutation p.L1564V 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-CN-6010-01 7 120629688 120629688 C G CPED1 Missense_Mutation p.P5A 0.13 tolerated(0.99) unknown(0) TCGA-CN-6010-01 7 121701229 121701229 A C PTPRZ1 Silent p.A2301A 0.38 TCGA-CN-6010-01 7 123097503 123097503 G A IQUB Missense_Mutation p.P709S 0.16 deleterious(0) probably_damaging(1) TCGA-CN-6010-01 7 128492757 128492757 G A FLNC Silent p.S1985S 0.21 TCGA-CN-6010-01 7 147183067 147183067 C G CNTNAP2 Missense_Mutation p.Q571E 0.17 deleterious(0) probably_damaging(0.979) TCGA-CN-6010-01 7 18687544 18687544 C T HDAC9 Missense_Mutation p.P391L 0.31 tolerated(0.13) benign(0.138) TCGA-CN-6010-01 7 29983623 29983623 C G SCRN1 Missense_Mutation p.G192R 0.13 deleterious(0) probably_damaging(1) TCGA-CN-6010-01 7 5103754 5103754 C G RBAK Missense_Mutation p.H223D 0.19 deleterious(0.02) benign(0.354) TCGA-CN-6010-01 7 75958917 75958917 C T YWHAG Missense_Mutation p.D241N 0.50 tolerated_low_confidence(0.12) benign(0.237) TCGA-CN-6010-01 7 83035320 83035320 G C SEMA3E Missense_Mutation p.A290G 0.04 deleterious(0) possibly_damaging(0.674) TCGA-CN-6010-01 7 87069700 87069700 C A ABCB4 Missense_Mutation p.D459Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-CN-6010-01 8 28906499 28906499 A T HMBOX1 Silent p.I353I 0.09 TCGA-CN-6010-01 8 77896369 77896369 T A PEX2 Nonsense_Mutation p.R16* 0.12 TCGA-CN-6010-01 9 123911032 123911032 G A CNTRL Missense_Mutation p.R1181H 0.16 benign(0) TCGA-CN-6010-01 9 131909695 131909696 - AAGTTCCCTGTGATCCAGCACTTC PPP2R4 In_Frame_Ins p.H308_F309insKFPVIQHF 0.15 TCGA-CN-6010-01 9 23704954 23704954 C G ELAVL2 Missense_Mutation p.R150P 0.07 deleterious(0.02) benign(0.061) TCGA-CN-6010-01 9 26905576 26905576 T A PLAA Missense_Mutation p.K774M 0.19 deleterious(0) probably_damaging(0.979) TCGA-CN-6010-01 9 4618025 4618025 G T SPATA6L Missense_Mutation p.S240Y 0.18 tolerated(0.18) benign(0.261) TCGA-CN-6010-01 9 91963071 91963071 C T SECISBP2 Silent p.D560D 0.19 TCGA-CN-6010-01 X 101969805 101969805 G C GPRASP2 Missense_Mutation p.G3A 0.07 deleterious(0.01) possibly_damaging(0.647) TCGA-CN-6010-01 X 109919483 109919483 C A CHRDL1 Missense_Mutation p.E451D 0.38 tolerated(0.41) benign(0.005) TCGA-CN-6010-01 X 134994090 134994090 A G SAGE1 Silent p.K833K 0.17 TCGA-CN-6010-01 X 91132758 91132758 C A PCDH11X Missense_Mutation p.P507T 0.50 tolerated(0.18) benign(0.005) TCGA-CN-6011-01 10 102743390 102743390 G C SEMA4G Silent p.V678V 0.22 TCGA-CN-6011-01 10 103827631 103827631 C A HPS6 3'UTR 0.30 TCGA-CN-6011-01 10 105174042 105174042 T C PDCD11 Silent p.A442A 0.33 TCGA-CN-6011-01 10 118202613 118202613 G T PNLIPRP3 Missense_Mutation p.G84V 0.22 tolerated(0.08) benign(0.017) TCGA-CN-6011-01 10 126172787 126172787 C T LHPP Nonsense_Mutation p.Q69* 0.21 TCGA-CN-6011-01 10 35896723 35896723 C G GJD4 Silent p.V94V 0.53 TCGA-CN-6011-01 10 38666925 38666925 G A HSD17B7P2 RNA 0.16 TCGA-CN-6011-01 10 5254582 5254582 G C AKR1C4 Missense_Mutation p.E192Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-CN-6011-01 10 55912906 55912906 C A PCDH15 Missense_Mutation p.A580S 0.27 tolerated(0.56) probably_damaging(0.93) TCGA-CN-6011-01 10 60272997 60272997 G A BICC1 Missense_Mutation p.E32K 0.42 deleterious_low_confidence(0.04) benign(0.041) TCGA-CN-6011-01 10 75056791 75056791 G C TTC18 Intron 0.19 TCGA-CN-6011-01 10 75672797 75672797 G A PLAU Silent p.T103T 0.17 TCGA-CN-6011-01 11 100933223 100933223 C T PGR Missense_Mutation p.E723K 0.31 deleterious(0) probably_damaging(0.995) TCGA-CN-6011-01 11 117110556 117110556 C T RNF214 Nonsense_Mutation p.Q220* 0.24 TCGA-CN-6011-01 11 20649523 20649523 C G SLC6A5 Intron 0.32 TCGA-CN-6011-01 11 30034073 30034073 G C KCNA4 Silent p.V51V 0.55 TCGA-CN-6011-01 11 43411297 43411297 C G TTC17 Missense_Mutation p.I115M 0.16 deleterious(0.01) probably_damaging(0.923) TCGA-CN-6011-01 11 4510323 4510323 C G OR52K1 Missense_Mutation p.L65V 0.61 deleterious(0) probably_damaging(0.998) TCGA-CN-6011-01 11 4929349 4929349 C A OR51A7 Missense_Mutation p.F250L 0.39 deleterious(0.03) probably_damaging(0.997) TCGA-CN-6011-01 11 55038411 55038411 G A TRIM48 3'UTR 0.29 TCGA-CN-6011-01 11 55111514 55111514 T A OR4A16 Missense_Mutation p.L280M 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.762) TCGA-CN-6011-01 11 55658863 55658863 G C TRIM51 Missense_Mutation p.D372H 0.20 tolerated(0.54) benign(0.049) TCGA-CN-6011-01 11 55890553 55890553 G C OR8H3 Missense_Mutation p.Q235H 0.14 tolerated(0.32) benign(0.008) TCGA-CN-6011-01 11 57097867 57097867 C T SSRP1 Missense_Mutation p.D445N 0.11 deleterious(0.03) possibly_damaging(0.566) TCGA-CN-6011-01 11 57466638 57466638 C T ZDHHC5 Missense_Mutation p.S577L 0.18 tolerated(0.06) probably_damaging(0.968) TCGA-CN-6011-01 11 58170596 58170596 G C OR5B3 Missense_Mutation p.A96G 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.881) TCGA-CN-6011-01 11 59190242 59190242 A G OR5A2 Missense_Mutation p.F62S 0.36 deleterious(0) possibly_damaging(0.691) TCGA-CN-6011-01 11 59283060 59283060 G C OR4D9 Silent p.L225L 0.16 TCGA-CN-6011-01 11 59829989 59829989 C T MS4A3 Silent p.L69L 0.20 TCGA-CN-6011-01 11 60183118 60183118 G C MS4A14 Missense_Mutation p.R259T 0.20 tolerated(0.76) benign(0) TCGA-CN-6011-01 11 60183186 60183186 G A MS4A14 Missense_Mutation p.E282K 0.10 tolerated(1) benign(0.113) TCGA-CN-6011-01 11 62287084 62287084 C T AHNAK Silent p.P4935P 0.17 TCGA-CN-6011-01 11 63743743 63743743 C T COX8A Missense_Mutation p.P54L 0.44 deleterious(0.04) probably_damaging(0.975) TCGA-CN-6011-01 11 65293810 65293810 C T SCYL1 Silent p.V197V 0.13 TCGA-CN-6011-01 11 66328070 66328070 C G CTSF 3'Flank 0.34 TCGA-CN-6011-01 11 68179074 68179074 C T LRP5 Missense_Mutation p.S830L 0.08 deleterious(0) probably_damaging(0.964) TCGA-CN-6011-01 11 70028776 70028776 G A ANO1 Missense_Mutation p.E858K 0.04 tolerated(0.29) benign(0.032) TCGA-CN-6011-01 11 71146300 71146300 C G DHCR7 3'UTR 0.05 TCGA-CN-6011-01 11 83984284 83984284 A C DLG2 Intron 0.62 TCGA-CN-6011-01 12 110466311 110466311 C T ANKRD13A Intron 0.24 TCGA-CN-6011-01 12 113333579 113333579 C A RPH3A Intron 0.16 TCGA-CN-6011-01 12 113599751 113599751 C G DDX54 Missense_Mutation p.K749N 0.27 tolerated(0.1) possibly_damaging(0.747) TCGA-CN-6011-01 12 120995255 120995255 G C RNF10 Missense_Mutation p.K272N 0.29 tolerated(0.07) possibly_damaging(0.786) TCGA-CN-6011-01 12 120995384 120995384 G A RNF10 Missense_Mutation p.G289D 0.21 deleterious(0) probably_damaging(0.95) TCGA-CN-6011-01 12 124957522 124957522 C T NCOR2 Silent p.Q189Q 0.29 TCGA-CN-6011-01 12 129293444 129293444 G C SLC15A4 Missense_Mutation p.L383V 0.21 tolerated(0.27) benign(0.047) TCGA-CN-6011-01 12 130926553 130926553 G A RIMBP2 Silent p.I431I 0.18 TCGA-CN-6011-01 12 25274696 25274696 C T CASC1 Missense_Mutation p.M410I 0.30 tolerated(0.46) benign(0.012) TCGA-CN-6011-01 12 2693722 2693722 G A CACNA1C Missense_Mutation p.E760K 0.19 deleterious(0) probably_damaging(0.987) TCGA-CN-6011-01 12 31555438 31555438 G T DENND5B Silent p.T981T 0.46 TCGA-CN-6011-01 12 40689444 40689444 G A LRRK2 Missense_Mutation p.E1032K 0.14 tolerated(0.13) possibly_damaging(0.7) TCGA-CN-6011-01 12 41967475 41967475 G A PDZRN4 Missense_Mutation p.R965Q 0.27 tolerated(1) probably_damaging(0.996) TCGA-CN-6011-01 12 49436548 49436559 GCGTACGGCTGC ACGTA KMT2D Frame_Shift_Del p.G1916Vfs*129 0.22 TCGA-CN-6011-01 12 49436573 49436573 G T KMT2D Silent p.T1911T 0.29 TCGA-CN-6011-01 12 55641287 55641287 A - OR6C74 Frame_Shift_Del p.T73Lfs*62 0.22 TCGA-CN-6011-01 12 57113755 57113755 C A NACA Missense_Mutation p.S520I 0.49 tolerated_low_confidence(0.21) benign(0.007) TCGA-CN-6011-01 12 58163602 58163602 G A METTL1 Missense_Mutation p.R138C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CN-6011-01 12 64383777 64383777 G C SRGAP1 Missense_Mutation p.L117F 0.31 deleterious(0) possibly_damaging(0.778) TCGA-CN-6011-01 13 109540724 109540724 G C MYO16 Missense_Mutation p.E498Q 0.67 deleterious(0) probably_damaging(0.993) TCGA-CN-6011-01 13 21417053 21417053 C G XPO4 Missense_Mutation p.W236C 0.26 deleterious(0) possibly_damaging(0.783) TCGA-CN-6011-01 13 29599371 29599371 G C MTUS2 Missense_Mutation p.R189T 0.34 deleterious(0.02) benign(0.018) TCGA-CN-6011-01 13 33627907 33627907 C T KL Missense_Mutation p.H275Y 0.27 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 13 33638296 33638296 G A KL Silent p.S1004S 0.36 TCGA-CN-6011-01 13 79911235 79911235 A G RBM26 Splice_Site p.X884_splice 0.75 TCGA-CN-6011-01 14 103807372 103807372 G C EIF5 Missense_Mutation p.D427H 0.13 deleterious(0) probably_damaging(0.995) TCGA-CN-6011-01 14 105225821 105225821 G A SIVA1 Silent p.%3D 0.14 TCGA-CN-6011-01 14 105241317 105241317 G A AKT1 Silent p.T197T 0.19 TCGA-CN-6011-01 14 106733388 106733388 G A IGHV1-24 Missense_Mutation p.S36L 0.22 deleterious(0.03) benign(0.397) TCGA-CN-6011-01 14 20388770 20388770 A G OR4K5 Missense_Mutation p.D2G 0.17 tolerated(0.11) benign(0.002) TCGA-CN-6011-01 14 21796580 21796580 C T RPGRIP1 Intron 0.36 TCGA-CN-6011-01 14 31081542 31081542 C G G2E3 Missense_Mutation p.L544V 0.32 tolerated(0.36) probably_damaging(0.999) TCGA-CN-6011-01 14 31405711 31405711 T C STRN3 Missense_Mutation p.N279S 0.37 tolerated(0.7) benign(0.152) TCGA-CN-6011-01 14 45673305 45673305 C T MIS18BP1 3'UTR 0.42 TCGA-CN-6011-01 14 51561183 51561183 G A TRIM9 Nonsense_Mutation p.Q159* 0.25 TCGA-CN-6011-01 14 61190346 61190346 C T SIX4 Silent p.L149L 0.20 TCGA-CN-6011-01 14 63749901 63749901 C T RHOJ Silent p.L155L 0.32 TCGA-CN-6011-01 14 64564771 64564771 G C SYNE2 Missense_Mutation p.L4071F 0.08 benign(0.191) TCGA-CN-6011-01 14 68086772 68086772 G A ARG2 Silent p.V26V 0.33 TCGA-CN-6011-01 14 75181623 75181623 C G FCF1 Silent p.P40P 0.36 TCGA-CN-6011-01 14 75359641 75359641 C T DLST Nonsense_Mutation p.Q183* 0.48 TCGA-CN-6011-01 14 75361017 75361017 G C DLST Missense_Mutation p.E225D 0.35 deleterious(0) benign(0.426) TCGA-CN-6011-01 14 76621245 76621245 C G GPATCH2L Nonsense_Mutation p.S180* 0.24 TCGA-CN-6011-01 14 81209426 81209426 C T CEP128 Silent p.E933E 0.18 TCGA-CN-6011-01 14 81952776 81952776 C T SEL1L Missense_Mutation p.R552Q 0.25 tolerated(0.06) probably_damaging(1) TCGA-CN-6011-01 14 99932040 99932040 T A SETD3 Nonsense_Mutation p.K35* 0.24 TCGA-CN-6011-01 15 25453133 25453133 T A SNORD115-22 5'Flank 0.08 TCGA-CN-6011-01 15 31339443 31339443 C T TRPM1 Silent p.P562P 0.18 TCGA-CN-6011-01 15 34382601 34382601 G C EMC7 Missense_Mutation p.L138V 0.21 deleterious(0) probably_damaging(0.964) TCGA-CN-6011-01 15 40914964 40914964 G A CASC5 Silent p.Q860Q 0.42 TCGA-CN-6011-01 15 41148218 41148218 G A SPINT1 Missense_Mutation p.E432K 0.27 deleterious(0.03) possibly_damaging(0.457) TCGA-CN-6011-01 15 42742338 42742338 G A ZNF106 Missense_Mutation p.S688F 0.24 tolerated(0.74) benign(0.219) TCGA-CN-6011-01 15 44087395 44087395 G T SERINC4 Missense_Mutation p.L454M 0.26 deleterious(0.03) possibly_damaging(0.901) TCGA-CN-6011-01 15 45778943 45778943 C G SLC30A4 Missense_Mutation p.G334A 0.19 deleterious(0.03) probably_damaging(1) TCGA-CN-6011-01 15 48720540 48720540 C T FBN1 Intron 0.18 TCGA-CN-6011-01 15 50866605 50866605 C G TRPM7 Missense_Mutation p.G1725A 0.11 deleterious(0) probably_damaging(0.999) TCGA-CN-6011-01 15 51778300 51778300 G C DMXL2 Missense_Mutation p.Q1818E 0.52 deleterious(0.02) possibly_damaging(0.458) TCGA-CN-6011-01 15 54305292 54305292 G T UNC13C Missense_Mutation p.K64N 0.14 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-CN-6011-01 15 54586136 54586136 G A UNC13C Missense_Mutation p.D1288N 0.51 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CN-6011-01 15 65489097 65489097 C T CILP Missense_Mutation p.R1176K 0.29 tolerated_low_confidence(0.62) benign(0.005) TCGA-CN-6011-01 15 69739225 69739225 G A KIF23 Missense_Mutation p.E938K 0.16 deleterious(0.01) benign(0.014) TCGA-CN-6011-01 15 75982533 75982533 G A CSPG4 Silent p.I291I 0.25 TCGA-CN-6011-01 15 76634064 76634064 C A ISL2 Missense_Mutation p.S323Y 0.16 deleterious(0.04) possibly_damaging(0.886) TCGA-CN-6011-01 15 79294085 79294085 G A RASGRF1 Nonsense_Mutation p.Q848* 0.45 TCGA-CN-6011-01 15 93007381 93007381 G C ST8SIA2 Missense_Mutation p.L298F 0.18 possibly_damaging(0.886) TCGA-CN-6011-01 16 12145835 12145835 G A SNX29 Missense_Mutation p.D294N 0.21 deleterious_low_confidence(0.01) benign(0.077) TCGA-CN-6011-01 16 15224549 15224549 C T RP11-1186N24.5 RNA 0.19 TCGA-CN-6011-01 16 15833949 15833949 C T MYH11 Missense_Mutation p.E993K 0.26 benign(0.011) TCGA-CN-6011-01 16 15841954 15841954 G C MYH11 Missense_Mutation p.I717M 0.18 probably_damaging(0.99) TCGA-CN-6011-01 16 17221547 17221547 G A XYLT1 Silent p.D733D 0.54 TCGA-CN-6011-01 16 61935158 61935158 G A CDH8 Nonsense_Mutation p.Q158* 0.23 TCGA-CN-6011-01 16 71212846 71212846 C T HYDIN Silent p.L122L 0.24 TCGA-CN-6011-01 16 71609874 71609874 C G TAT Missense_Mutation p.M97I 0.19 tolerated(0.34) benign(0.001) TCGA-CN-6011-01 16 74527006 74527006 C G GLG1 Silent p.L361L 0.26 TCGA-CN-6011-01 16 84089658 84089658 C T MBTPS1 Missense_Mutation p.V972M 0.57 tolerated_low_confidence(0.06) benign(0.31) TCGA-CN-6011-01 17 16830195 16830195 G A TBC1D27 RNA 0.18 TCGA-CN-6011-01 17 39538614 39538614 G A KRT34 Missense_Mutation p.A4V 0.52 tolerated_low_confidence(0.22) benign(0) TCGA-CN-6011-01 17 4455427 4455427 G A MYBBP1A Missense_Mutation p.P300S 0.05 deleterious(0.02) possibly_damaging(0.652) TCGA-CN-6011-01 17 44851102 44851102 C T WNT3 Missense_Mutation p.R85Q 0.65 deleterious(0.03) possibly_damaging(0.611) TCGA-CN-6011-01 17 56770070 56770070 G A RAD51C Silent p.A22A 0.68 TCGA-CN-6011-01 17 59761063 59761063 G A BRIP1 Missense_Mutation p.S1115F 0.71 deleterious_low_confidence(0.01) possibly_damaging(0.865) TCGA-CN-6011-01 17 6606428 6606428 G A SLC13A5 Silent p.L193L 0.25 TCGA-CN-6011-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.21 deleterious(0.03) probably_damaging(1) TCGA-CN-6011-01 17 7578234 7578235 - T TP53 Nonsense_Mutation p.Y205* 0.29 TCGA-CN-6011-01 17 7907263 7907263 C T GUCY2D Missense_Mutation p.S272F 0.23 deleterious(0.03) probably_damaging(0.938) TCGA-CN-6011-01 18 14513720 14513720 C T POTEC Missense_Mutation p.E492K 0.08 tolerated(0.32) probably_damaging(0.931) TCGA-CN-6011-01 18 14851748 14851748 G C ANKRD30B Missense_Mutation p.V1150L 0.46 deleterious(0.03) possibly_damaging(0.484) TCGA-CN-6011-01 18 25568547 25568547 C T CDH2 Missense_Mutation p.R561Q 0.38 deleterious(0) possibly_damaging(0.867) TCGA-CN-6011-01 18 31324115 31324115 G C ASXL3 Missense_Mutation p.E1435Q 0.17 probably_damaging(0.962) TCGA-CN-6011-01 18 74729142 74729142 C G MBP Missense_Mutation p.K74N 0.62 deleterious_low_confidence(0.03) benign(0.009) TCGA-CN-6011-01 18 9708423 9708423 C G RAB31 Silent p.L7L 0.21 TCGA-CN-6011-01 19 1085820 1085820 G A HMHA1 Missense_Mutation p.E1092K 0.40 deleterious_low_confidence(0.05) benign(0.392) TCGA-CN-6011-01 19 12126809 12126809 G C ZNF433 Missense_Mutation p.F291L 0.25 tolerated(0.06) possibly_damaging(0.474) TCGA-CN-6011-01 19 14952228 14952228 C G OR7A10 Silent p.L154L 0.06 TCGA-CN-6011-01 19 15291928 15291928 G T NOTCH3 Missense_Mutation p.F946L 0.21 deleterious(0) possibly_damaging(0.758) TCGA-CN-6011-01 19 1556757 1556757 C T MEX3D Missense_Mutation p.R254H 0.29 deleterious(0) possibly_damaging(0.744) TCGA-CN-6011-01 19 17111256 17111256 C G CPAMD8 Missense_Mutation p.E326Q 0.22 tolerated(0.09) probably_damaging(0.964) TCGA-CN-6011-01 19 18507145 18507145 C A LRRC25 Missense_Mutation p.G210V 0.07 tolerated(0.15) benign(0.022) TCGA-CN-6011-01 19 21948580 21948580 C T ZNF100 Silent p.P4P 0.28 TCGA-CN-6011-01 19 22156005 22156005 A T ZNF208 Missense_Mutation p.C611S 0.55 deleterious(0) probably_damaging(0.982) TCGA-CN-6011-01 19 2427036 2427036 G C TIMM13 Missense_Mutation p.I66M 0.36 deleterious(0) possibly_damaging(0.753) TCGA-CN-6011-01 19 2853240 2853240 G C ZNF555 Missense_Mutation p.E393Q 0.30 deleterious(0.01) benign(0.011) TCGA-CN-6011-01 19 3192541 3192541 C T NCLN Silent p.L86L 0.22 TCGA-CN-6011-01 19 33200187 33200187 G A NUDT19 Missense_Mutation p.A271T 0.22 tolerated(0.34) benign(0.05) TCGA-CN-6011-01 19 33493179 33493179 G C RHPN2 Missense_Mutation p.T360S 0.35 tolerated(0.11) benign(0.014) TCGA-CN-6011-01 19 41066348 41066348 G A SPTBN4 Intron 0.11 TCGA-CN-6011-01 19 43433864 43433864 G T PSG7 Missense_Mutation p.P147T 0.82 tolerated(0.08) probably_damaging(0.976) TCGA-CN-6011-01 19 44223308 44223308 G A IRGC Missense_Mutation p.E200K 0.22 tolerated(0.5) benign(0.321) TCGA-CN-6011-01 19 44831903 44831903 G A ZNF112 Nonsense_Mutation p.Q809* 0.26 TCGA-CN-6011-01 19 45818846 45818846 C A CKM Missense_Mutation p.D120Y 0.28 deleterious(0.01) possibly_damaging(0.875) TCGA-CN-6011-01 19 47151925 47151925 G A DACT3 Silent p.D568D 0.32 TCGA-CN-6011-01 19 49140149 49140149 G A DBP Silent p.L35L 0.23 TCGA-CN-6011-01 19 49484831 49484831 G T GYS1 Missense_Mutation p.F375L 0.12 tolerated(0.17) probably_damaging(0.987) TCGA-CN-6011-01 19 49935905 49935905 C T SLC17A7 Missense_Mutation p.G341S 0.57 deleterious(0) probably_damaging(0.981) TCGA-CN-6011-01 19 50243129 50243129 G A TSKS Silent p.L561L 0.28 TCGA-CN-6011-01 19 52034048 52034048 G A SIGLEC6 Missense_Mutation p.S198L 0.23 tolerated(0.07) possibly_damaging(0.882) TCGA-CN-6011-01 19 52217097 52217097 G A HAS1 Silent p.G440G 0.33 TCGA-CN-6011-01 19 53950463 53950463 G C ZNF761 RNA 0.24 TCGA-CN-6011-01 19 54409999 54409999 G A PRKCG Silent p.T648T 0.26 TCGA-CN-6011-01 19 54606193 54606193 G A NDUFA3 Missense_Mutation p.A3T 0.42 tolerated(0.31) probably_damaging(0.996) TCGA-CN-6011-01 19 57035959 57035959 G A ZNF471 Missense_Mutation p.E175K 0.09 tolerated(0.11) benign(0.034) TCGA-CN-6011-01 19 57088415 57088415 G C ZNF470 Missense_Mutation p.K206N 0.55 tolerated(0.21) benign(0) TCGA-CN-6011-01 19 571571 571571 C T BSG 5'Flank 0.24 TCGA-CN-6011-01 19 57175000 57175000 G T ZNF835 Missense_Mutation p.Q523K 0.21 tolerated_low_confidence(0.21) benign(0) TCGA-CN-6011-01 19 58320268 58320268 C A ZNF552 Nonsense_Mutation p.E122* 0.22 TCGA-CN-6011-01 19 9084208 9084208 A G MUC16 Missense_Mutation p.I2536T 0.31 unknown(0) TCGA-CN-6011-01 19 9578107 9578107 G C ZNF560 Missense_Mutation p.H506D 0.11 deleterious(0) possibly_damaging(0.837) TCGA-CN-6011-01 1 116666715 116666715 C A MAB21L3 Missense_Mutation p.T73K 0.27 deleterious(0.02) probably_damaging(0.948) TCGA-CN-6011-01 1 119927521 119927521 C T HAO2 Nonsense_Mutation p.Q136* 0.27 TCGA-CN-6011-01 1 150054908 150054908 G A VPS45 Missense_Mutation p.E349K 0.34 deleterious(0) possibly_damaging(0.752) TCGA-CN-6011-01 1 150915471 150915471 C G SETDB1 Missense_Mutation p.Q273E 0.23 tolerated(0.49) benign(0.395) TCGA-CN-6011-01 1 151505015 151505015 G C CGN Missense_Mutation p.K903N 0.16 deleterious(0) probably_damaging(0.994) TCGA-CN-6011-01 1 152329438 152329438 C T FLG2 Missense_Mutation p.R275K 0.75 unknown(0) TCGA-CN-6011-01 1 152382205 152382205 C G CRNN Silent p.V451V 0.21 TCGA-CN-6011-01 1 153391671 153391671 G C S100A7A Missense_Mutation p.K64N 0.26 deleterious(0.03) benign(0.354) TCGA-CN-6011-01 1 154841649 154841649 T C KCNN3 Silent p.Q264Q 0.77 TCGA-CN-6011-01 1 156006663 156006663 G A UBQLN4 3'UTR 0.34 TCGA-CN-6011-01 1 157103857 157103857 C G ETV3 Intron 0.28 TCGA-CN-6011-01 1 159275900 159275900 C T FCER1A Missense_Mutation p.L152F 0.31 tolerated(0.41) benign(0.333) TCGA-CN-6011-01 1 16893778 16893778 G A NBPF1 Missense_Mutation p.S912L 0.02 tolerated(1) benign(0.135) TCGA-CN-6011-01 1 174979295 174979305 TATATAAATTT - CACYBP 3'UTR 0.42 TCGA-CN-6011-01 1 178885531 178885531 T C RALGPS2 3'UTR 0.78 TCGA-CN-6011-01 1 179603612 179603612 G T TDRD5 Nonsense_Mutation p.E383* 0.24 TCGA-CN-6011-01 1 180166338 180166338 G A QSOX1 3'UTR 0.46 TCGA-CN-6011-01 1 19473443 19473443 C T UBR4 Missense_Mutation p.E2561K 0.24 benign(0.304) TCGA-CN-6011-01 1 202702867 202702867 G A KDM5B Nonsense_Mutation p.Q1191* 0.29 TCGA-CN-6011-01 1 202731854 202731854 C G KDM5B Missense_Mutation p.K297N 0.17 tolerated(0.11) benign(0.357) TCGA-CN-6011-01 1 206225115 206225115 G C AVPR1B Missense_Mutation p.E225D 0.21 tolerated(0.06) possibly_damaging(0.827) TCGA-CN-6011-01 1 210857055 210857055 C G KCNH1 Missense_Mutation p.K846N 0.21 deleterious_low_confidence(0.02) benign(0.065) TCGA-CN-6011-01 1 213009314 213009314 C G C1orf227 Missense_Mutation p.D60H 0.26 tolerated(0.9) benign(0) TCGA-CN-6011-01 1 214816003 214816003 C T CENPF Missense_Mutation p.S1441L 0.24 benign(0.007) TCGA-CN-6011-01 1 216040365 216040365 C G USH2A Silent p.V2943V 0.26 TCGA-CN-6011-01 1 228509435 228509435 G A OBSCN Missense_Mutation p.D5922N 0.22 probably_damaging(0.999) TCGA-CN-6011-01 1 237947379 237947379 G A RYR2 Missense_Mutation p.E4123K 0.43 possibly_damaging(0.589) TCGA-CN-6011-01 1 243354558 243354558 C G CEP170 Silent p.G290G 0.20 TCGA-CN-6011-01 1 248652103 248652103 C T OR2T5 Missense_Mutation p.L72F 0.18 tolerated(0.24) benign(0.049) TCGA-CN-6011-01 1 249211397 249211397 C T PGBD2 Missense_Mutation p.P205L 0.21 deleterious(0.01) possibly_damaging(0.834) TCGA-CN-6011-01 1 26898704 26898704 G A RPS6KA1 Missense_Mutation p.E632K 0.15 tolerated(0.19) benign(0.036) TCGA-CN-6011-01 1 27220788 27220788 C T GPATCH3 Silent p.E330E 0.29 TCGA-CN-6011-01 1 27223839 27223839 C G GPATCH3 Missense_Mutation p.E277Q 0.28 tolerated(0.45) benign(0.015) TCGA-CN-6011-01 1 28374933 28374933 T C EYA3 Missense_Mutation p.K13R 0.26 deleterious(0.01) possibly_damaging(0.893) TCGA-CN-6011-01 1 35579545 35579545 G C ZMYM1 Missense_Mutation p.G705A 0.15 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 1 35579633 35579633 G C ZMYM1 Missense_Mutation p.K734N 0.20 deleterious(0) possibly_damaging(0.838) TCGA-CN-6011-01 1 40434278 40434278 G A MFSD2A Missense_Mutation p.E477K 0.33 tolerated(0.31) benign(0.008) TCGA-CN-6011-01 1 41976647 41976647 C G HIVEP3 Silent p.L2232L 0.38 TCGA-CN-6011-01 1 45809091 45809091 G T TOE1 Missense_Mutation p.R417I 0.53 tolerated(0.19) benign(0.004) TCGA-CN-6011-01 1 4715467 4715467 C G AJAP1 5'UTR 0.15 TCGA-CN-6011-01 1 47401219 47401219 T G CYP4A11 Missense_Mutation p.H204P 0.21 tolerated(0.08) possibly_damaging(0.637) TCGA-CN-6011-01 1 47904276 47904276 A G FOXD2 Missense_Mutation p.I157V 0.30 deleterious(0) probably_damaging(0.996) TCGA-CN-6011-01 1 52810452 52810452 G A ZFYVE9 Missense_Mutation p.E1318K 0.31 tolerated(0.43) benign(0.403) TCGA-CN-6011-01 1 53262010 53262010 G C ZYG11B Missense_Mutation p.D461H 0.23 deleterious(0.01) benign(0.206) TCGA-CN-6011-01 1 60381745 60381746 - A CYP2J2 Frame_Shift_Ins p.S80* 0.30 TCGA-CN-6011-01 1 71478156 71478156 C G PTGER3 Missense_Mutation p.L303F 0.30 deleterious(0.04) probably_damaging(0.978) TCGA-CN-6011-01 1 75188946 75188946 G A CRYZ Silent p.I40I 0.29 TCGA-CN-6011-01 1 76255213 76255213 C G RABGGTB Intron 0.18 TCGA-CN-6011-01 1 85403762 85403762 G C MCOLN2 Missense_Mutation p.L372V 0.48 tolerated(0.09) possibly_damaging(0.513) TCGA-CN-6011-01 1 91813030 91813030 A G HFM1 Missense_Mutation p.F737S 0.17 deleterious(0) probably_damaging(0.942) TCGA-CN-6011-01 1 92495681 92495681 C T EPHX4 Silent p.L15L 0.24 TCGA-CN-6011-01 1 94643210 94643210 G A ARHGAP29 Missense_Mutation p.R955C 0.25 tolerated(0.11) benign(0.003) TCGA-CN-6011-01 1 981868 981868 C T AGRN Silent p.P1001P 0.13 TCGA-CN-6011-01 20 14306766 14306766 C G FLRT3 Missense_Mutation p.E463Q 0.31 tolerated(0.32) benign(0.209) TCGA-CN-6011-01 20 30584930 30584930 G A XKR7 Silent p.T470T 0.35 TCGA-CN-6011-01 20 31413815 31413815 C G MAPRE1 Missense_Mutation p.L28V 0.37 deleterious(0.05) possibly_damaging(0.841) TCGA-CN-6011-01 20 31607532 31607532 C T BPIFB2 Silent p.F352F 0.18 TCGA-CN-6011-01 20 3782998 3782998 G A CDC25B Missense_Mutation p.R390Q 0.34 deleterious(0.04) possibly_damaging(0.733) TCGA-CN-6011-01 20 40980903 40980903 G A PTPRT Missense_Mutation p.S528L 0.16 deleterious(0) possibly_damaging(0.471) TCGA-CN-6011-01 20 40980908 40980908 G T PTPRT Silent p.V526V 0.16 TCGA-CN-6011-01 20 48522108 48522108 G A SPATA2 3'UTR 0.18 TCGA-CN-6011-01 20 57428999 57428999 G C GNAS Missense_Mutation p.E227Q 0.15 tolerated_low_confidence(0.15) unknown(0) TCGA-CN-6011-01 20 58441392 58441392 C G SYCP2 Missense_Mutation p.E1426Q 0.20 deleterious(0) probably_damaging(0.955) TCGA-CN-6011-01 20 58547156 58547156 G T CDH26 Missense_Mutation p.R124L 0.24 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 20 61511034 61511034 C G DIDO1 Missense_Mutation p.D2092H 0.13 benign(0.438) TCGA-CN-6011-01 20 62338354 62338354 C G ARFRP1 Missense_Mutation p.K30N 0.24 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 20 62421736 62421736 G C ZBTB46 Missense_Mutation p.I125M 0.23 deleterious(0) probably_damaging(0.998) TCGA-CN-6011-01 21 10951399 10951399 C T TPTE Missense_Mutation p.D105N 0.14 deleterious(0.02) benign(0.263) TCGA-CN-6011-01 21 10951400 10951400 C T TPTE Silent p.L104L 0.14 TCGA-CN-6011-01 21 31973557 31973557 G A KRTAP22-1 Missense_Mutation p.E40K 0.19 unknown(0) TCGA-CN-6011-01 21 38072060 38072060 C G SIM2 Missense_Mutation p.S5C 0.16 deleterious(0.03) possibly_damaging(0.867) TCGA-CN-6011-01 21 38604767 38604767 G A DSCR3 Intron 0.07 TCGA-CN-6011-01 21 45387862 45387862 G A AGPAT3 Missense_Mutation p.E72K 0.34 tolerated(0.11) benign(0.01) TCGA-CN-6011-01 22 20724457 20724457 G A USP41 Missense_Mutation p.L145F 0.19 tolerated(0.09) benign(0.386) TCGA-CN-6011-01 22 24563212 24563212 G A CABIN1 Silent p.Q1871Q 0.06 TCGA-CN-6011-01 22 32100665 32100665 T C PRR14L Missense_Mutation p.Y1935C 0.18 tolerated(0.17) benign(0.024) TCGA-CN-6011-01 22 32831730 32831730 G A BPIFC Silent p.F295F 0.44 TCGA-CN-6011-01 22 38084953 38084953 A G NOL12 Missense_Mutation p.D112G 0.22 deleterious(0.01) probably_damaging(0.948) TCGA-CN-6011-01 22 40816946 40816946 G T MKL1 Silent p.I262I 0.67 TCGA-CN-6011-01 22 40816975 40816975 G A MKL1 Missense_Mutation p.P253S 0.56 deleterious(0) probably_damaging(0.986) TCGA-CN-6011-01 22 50904631 50904631 G A SBF1 Missense_Mutation p.T282M 0.31 deleterious(0) probably_damaging(0.999) TCGA-CN-6011-01 2 10136059 10136059 C T GRHL1 Missense_Mutation p.P518S 0.31 tolerated(0.22) benign(0.005) TCGA-CN-6011-01 2 106498397 106498397 C T NCK2 Silent p.F280F 0.19 TCGA-CN-6011-01 2 128354096 128354096 C T MYO7B Silent p.L768L 0.19 TCGA-CN-6011-01 2 135738606 135738606 G T MAP3K19 Silent p.A1235A 0.25 TCGA-CN-6011-01 2 141771238 141771238 T C LRP1B Missense_Mutation p.Y756C 0.45 possibly_damaging(0.759) TCGA-CN-6011-01 2 162865118 162865118 G C DPP4 Missense_Mutation p.F647L 0.26 deleterious(0.02) probably_damaging(0.984) TCGA-CN-6011-01 2 163128753 163128753 C G IFIH1 Missense_Mutation p.E867Q 0.23 tolerated(0.11) benign(0.126) TCGA-CN-6011-01 2 163144671 163144671 C T IFIH1 Missense_Mutation p.G357R 0.20 deleterious(0.04) probably_damaging(0.925) TCGA-CN-6011-01 2 163144765 163144765 G A IFIH1 Silent p.I325I 0.30 TCGA-CN-6011-01 2 165984368 165984368 C G SCN3A Missense_Mutation p.E1056Q 0.21 tolerated(0.16) possibly_damaging(0.659) TCGA-CN-6011-01 2 166901607 166901607 G A SCN1A Silent p.F536F 0.11 TCGA-CN-6011-01 2 168107923 168107923 G C XIRP2 Missense_Mutation p.E3341Q 0.22 possibly_damaging(0.527) TCGA-CN-6011-01 2 171854298 171854298 T C TLK1 Missense_Mutation p.E647G 0.50 tolerated(0.12) possibly_damaging(0.843) TCGA-CN-6011-01 2 173916620 173916620 G A RAPGEF4 3'UTR 0.30 TCGA-CN-6011-01 2 175264800 175264800 G A SCRN3 Missense_Mutation p.E104K 0.23 tolerated(0.5) benign(0.048) TCGA-CN-6011-01 2 175666502 175666502 C T CHN1 Missense_Mutation p.E381K 0.21 tolerated(0.19) benign(0.02) TCGA-CN-6011-01 2 179599449 179599449 C T TTN Missense_Mutation p.E5068K 0.19 TCGA-CN-6011-01 2 179640236 179640236 C T TTN Missense_Mutation p.E2119K 0.25 TCGA-CN-6011-01 2 182468711 182468711 G T CERKL Missense_Mutation p.Q112K 0.61 tolerated(0.24) benign(0.009) TCGA-CN-6011-01 2 182767020 182767020 G C SSFA2 Missense_Mutation p.E414Q 0.22 tolerated(0.32) benign(0.014) TCGA-CN-6011-01 2 196673414 196673414 C T DNAH7 Missense_Mutation p.D3359N 0.17 deleterious(0.04) probably_damaging(0.914) TCGA-CN-6011-01 2 196729233 196729233 C G DNAH7 Silent p.V2382V 0.18 TCGA-CN-6011-01 2 198265441 198265441 C T SF3B1 Missense_Mutation p.E906K 0.16 deleterious(0.02) benign(0.086) TCGA-CN-6011-01 2 204732684 204732684 C T CTLA4 Nonsense_Mutation p.Q7* 0.41 TCGA-CN-6011-01 2 228159768 228159768 G A COL4A3 Silent p.K1169K 0.68 TCGA-CN-6011-01 2 230725127 230725127 A T TRIP12 Intron 0.62 TCGA-CN-6011-01 2 231368918 231368918 G C SP100 Missense_Mutation p.D595H 0.28 deleterious(0) probably_damaging(0.979) TCGA-CN-6011-01 2 232143099 232143099 G A ARMC9 Silent p.K493K 0.26 TCGA-CN-6011-01 2 239990186 239990186 T C HDAC4 Silent p.R951R 0.15 TCGA-CN-6011-01 2 24247130 24247130 G T MFSD2B Silent p.L493L 0.78 TCGA-CN-6011-01 2 32445600 32445600 C G SLC30A6 Missense_Mutation p.L442V 0.78 tolerated_low_confidence(0.48) benign(0.209) TCGA-CN-6011-01 2 32688441 32688441 C T BIRC6 Nonsense_Mutation p.Q1645* 0.19 TCGA-CN-6011-01 2 3599789 3599789 C T RNASEH1 Missense_Mutation p.M118I 0.27 tolerated(0.32) benign(0.004) TCGA-CN-6011-01 2 44565513 44565513 C T PREPL Missense_Mutation p.D378N 0.67 tolerated(0.46) benign(0.115) TCGA-CN-6011-01 2 45616412 45616412 G C SRBD1 3'UTR 0.33 TCGA-CN-6011-01 2 75115157 75115157 G C HK2 Missense_Mutation p.E783Q 0.22 tolerated(0.28) possibly_damaging(0.829) TCGA-CN-6011-01 2 89103861 89103861 C T ANKRD36BP2 RNA 0.55 TCGA-CN-6011-01 2 89327186 89327186 C T IGKV3-11 5'UTR 0.24 TCGA-CN-6011-01 2 95940262 95940262 G C PROM2 5'UTR 0.14 TCGA-CN-6011-01 3 115560764 115560764 C T LSAMP Missense_Mutation p.E283K 0.23 tolerated(0.56) probably_damaging(0.963) TCGA-CN-6011-01 3 119198980 119198980 G T POGLUT1 Missense_Mutation p.G180V 0.67 deleterious(0) probably_damaging(0.998) TCGA-CN-6011-01 3 127774526 127774526 T A SEC61A1 Missense_Mutation p.F51Y 0.21 tolerated(1) benign(0.038) TCGA-CN-6011-01 3 139093334 139093334 C T COPB2 Missense_Mutation p.D250N 0.29 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 3 145918834 145918834 C G PLSCR4 Missense_Mutation p.E129Q 0.15 deleterious(0.02) benign(0.33) TCGA-CN-6011-01 3 154834751 154834751 G A MME Silent p.K210K 0.19 TCGA-CN-6011-01 3 15677117 15677117 C T BTD Silent p.I77I 0.36 TCGA-CN-6011-01 3 156978935 156978935 G C VEPH1 Silent p.T830T 0.16 TCGA-CN-6011-01 3 171323140 171323140 G C PLD1 Missense_Mutation p.F983L 0.26 deleterious(0.01) possibly_damaging(0.854) TCGA-CN-6011-01 3 182923663 182923663 C T MCF2L2 Splice_Site p.X962_splice 0.12 TCGA-CN-6011-01 3 185183579 185183579 G A MAP3K13 Missense_Mutation p.R478Q 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-CN-6011-01 3 189612142 189612142 G A TP63 Missense_Mutation p.E632K 0.09 tolerated(0.08) probably_damaging(0.98) TCGA-CN-6011-01 3 195015475 195015475 C A ACAP2 Missense_Mutation p.V580L 0.13 tolerated(0.56) benign(0.001) TCGA-CN-6011-01 3 197346747 197346747 C T AC024560.3 RNA 0.19 TCGA-CN-6011-01 3 197553768 197553768 G C LRCH3 Missense_Mutation p.L220F 0.17 deleterious(0) probably_damaging(0.979) TCGA-CN-6011-01 3 25666199 25666199 C T TOP2B Missense_Mutation p.E769K 0.19 deleterious(0) probably_damaging(0.988) TCGA-CN-6011-01 3 47030591 47030591 G C NBEAL2 Missense_Mutation p.E96Q 0.30 tolerated(0.13) benign(0.014) TCGA-CN-6011-01 3 55984542 55984542 G A ERC2 Nonsense_Mutation p.Q772* 0.33 TCGA-CN-6011-01 3 74535745 74535745 C T CNTN3 Missense_Mutation p.E74K 0.33 deleterious(0.02) benign(0.051) TCGA-CN-6011-01 3 77526562 77526562 C T ROBO2 Intron 0.28 TCGA-CN-6011-01 3 9979744 9979744 C T CRELD1 Silent p.S138S 0.81 TCGA-CN-6011-01 4 100062796 100062796 A G ADH4 Missense_Mutation p.V53A 0.33 tolerated(0.45) benign(0.009) TCGA-CN-6011-01 4 103534639 103534639 G A NFKB1 Missense_Mutation p.E884K 0.26 tolerated(0.14) possibly_damaging(0.758) TCGA-CN-6011-01 4 123249442 123249442 G A KIAA1109 Missense_Mutation p.E3727K 0.35 probably_damaging(0.991) TCGA-CN-6011-01 4 123977581 123977581 A G SPATA5 Missense_Mutation p.R707G 0.43 deleterious(0) probably_damaging(0.962) TCGA-CN-6011-01 4 126238739 126238739 C G FAT4 Missense_Mutation p.N391K 0.21 probably_damaging(1) TCGA-CN-6011-01 4 129043203 129043203 C T LARP1B Missense_Mutation p.P462S 0.51 deleterious(0.04) benign(0.244) TCGA-CN-6011-01 4 147561835 147561835 C T POU4F2 Missense_Mutation p.R369W 0.26 deleterious(0) probably_damaging(0.925) TCGA-CN-6011-01 4 151504859 151504859 G C MAB21L2 Missense_Mutation p.E226D 0.22 tolerated(0.22) benign(0.074) TCGA-CN-6011-01 4 164069513 164069513 G C NAF1 Nonsense_Mutation p.S205* 0.08 TCGA-CN-6011-01 4 164393894 164393894 T A TKTL2 Missense_Mutation p.K331N 0.26 deleterious(0.02) probably_damaging(0.987) TCGA-CN-6011-01 4 169317111 169317111 G C DDX60L Nonsense_Mutation p.S1219* 0.14 TCGA-CN-6011-01 4 169393962 169393962 T C DDX60L Splice_Site 0.71 TCGA-CN-6011-01 4 170989840 170989840 T G AADAT Splice_Site p.X268_splice 0.10 TCGA-CN-6011-01 4 54967925 54967925 C G GSX2 Missense_Mutation p.Q251E 0.06 deleterious(0) probably_damaging(0.981) TCGA-CN-6011-01 4 62897307 62897307 C T LPHN3 Silent p.F1122F 0.67 TCGA-CN-6011-01 4 68687883 68687883 G C TMPRSS11D 3'UTR 0.33 TCGA-CN-6011-01 4 69327605 69327605 C T TMPRSS11E Silent p.F26F 0.13 TCGA-CN-6011-01 4 71701944 71701944 C A GRSF1 Missense_Mutation p.V149F 0.06 deleterious(0) possibly_damaging(0.874) TCGA-CN-6011-01 4 76551024 76551024 C T CDKL2 Missense_Mutation p.R50Q 0.27 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 4 83719652 83719652 G C SCD5 Missense_Mutation p.F13L 0.50 tolerated(0.73) benign(0.006) TCGA-CN-6011-01 4 90857798 90857798 G A MMRN1 Silent p.S989S 0.69 TCGA-CN-6011-01 4 96046186 96046186 G C BMPR1B Missense_Mutation p.E197Q 0.29 tolerated(0.16) benign(0.064) TCGA-CN-6011-01 5 120022237 120022237 C A PRR16 Missense_Mutation p.P227T 0.53 tolerated_low_confidence(1) benign(0.009) TCGA-CN-6011-01 5 127645021 127645021 C G FBN2 Silent p.V1757V 0.07 TCGA-CN-6011-01 5 130762891 130762891 G A CTC-432M15.3 3'UTR 0.21 TCGA-CN-6011-01 5 137735696 137735696 G A KDM3B Missense_Mutation p.R1065H 0.06 deleterious(0.04) benign(0.413) TCGA-CN-6011-01 5 13923469 13923469 C T DNAH5 Missense_Mutation p.D120N 0.07 possibly_damaging(0.555) TCGA-CN-6011-01 5 140554059 140554059 G A PCDHB7 Missense_Mutation p.R548H 0.60 deleterious_low_confidence(0.04) benign(0.414) TCGA-CN-6011-01 5 140737171 140737171 G C PCDHGA4 Missense_Mutation p.G802R 0.30 tolerated_low_confidence(0.22) benign(0.019) TCGA-CN-6011-01 5 156751060 156751060 C T CYFIP2 Silent p.F575F 0.73 TCGA-CN-6011-01 5 159992488 159992488 C T ATP10B Missense_Mutation p.R1453H 0.29 deleterious_low_confidence(0.02) benign(0.072) TCGA-CN-6011-01 5 161569304 161569304 C A GABRG2 Missense_Mutation p.P342T 0.75 deleterious(0) probably_damaging(0.999) TCGA-CN-6011-01 5 16676206 16676206 G A MYO10 Nonsense_Mutation p.R1534* 0.11 TCGA-CN-6011-01 5 167957016 167957016 C T FBLL1 Silent p.I169I 0.89 TCGA-CN-6011-01 5 169454870 169454870 G C DOCK2 Missense_Mutation p.E1129Q 0.25 deleterious(0) possibly_damaging(0.801) TCGA-CN-6011-01 5 19473263 19473263 C T CDH18 3'UTR 0.12 TCGA-CN-6011-01 5 24593609 24593609 C T CDH10 5'UTR 0.12 TCGA-CN-6011-01 5 32230321 32230321 C G MTMR12 Missense_Mutation p.D603H 0.14 deleterious(0) probably_damaging(0.952) TCGA-CN-6011-01 5 34863022 34863022 G T TTC23L Missense_Mutation p.K133N 0.15 deleterious(0.03) possibly_damaging(0.848) TCGA-CN-6011-01 5 37725096 37725096 A G WDR70 Missense_Mutation p.K553R 0.54 tolerated(0.07) possibly_damaging(0.635) TCGA-CN-6011-01 5 38451422 38451422 C G EGFLAM Nonsense_Mutation p.S858* 0.11 TCGA-CN-6011-01 5 38991111 38991111 C G RICTOR Missense_Mutation p.D175H 0.04 deleterious(0) probably_damaging(0.994) TCGA-CN-6011-01 5 43527498 43527498 C G PAIP1 Missense_Mutation p.E474Q 0.08 deleterious(0) probably_damaging(0.983) TCGA-CN-6011-01 5 43527528 43527528 C G PAIP1 Missense_Mutation p.E464Q 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-CN-6011-01 5 9154808 9154808 C G SEMA5A Splice_Site p.X425_splice 0.18 TCGA-CN-6011-01 5 93859663 93859663 C G KIAA0825 Missense_Mutation p.G91A 0.30 tolerated(0.1) possibly_damaging(0.873) TCGA-CN-6011-01 5 99921889 99921889 G C FAM174A 3'UTR 0.18 TCGA-CN-6011-01 6 109771220 109771220 C T MICAL1 Silent p.V420V 0.09 TCGA-CN-6011-01 6 112443245 112443245 C G LAMA4 Missense_Mutation p.E1483Q 0.22 tolerated(0.28) benign(0.022) TCGA-CN-6011-01 6 116938128 116938128 G C RSPH4A Silent p.T114T 0.24 TCGA-CN-6011-01 6 119345734 119345734 C G FAM184A Missense_Mutation p.R135T 0.36 deleterious(0) possibly_damaging(0.839) TCGA-CN-6011-01 6 12120396 12120396 C G HIVEP1 Nonsense_Mutation p.S123* 0.31 TCGA-CN-6011-01 6 132785161 132785161 G A STX7 Nonsense_Mutation p.Q222* 0.24 TCGA-CN-6011-01 6 132892295 132892295 T C TAAR6 Silent p.L279L 0.26 TCGA-CN-6011-01 6 139106386 139106386 G A CCDC28A Silent p.Q205Q 0.52 TCGA-CN-6011-01 6 139363855 139363855 G C ABRACL Splice_Site p.X21_splice 0.23 TCGA-CN-6011-01 6 142718791 142718791 A G GPR126 Missense_Mutation p.N489S 0.56 tolerated(0.15) benign(0.169) TCGA-CN-6011-01 6 143094723 143094723 G C HIVEP2 Missense_Mutation p.L385V 0.29 deleterious(0.02) probably_damaging(0.955) TCGA-CN-6011-01 6 152720763 152720763 T A SYNE1 Nonsense_Mutation p.K2409* 0.50 TCGA-CN-6011-01 6 152763259 152763259 G T SYNE1 Missense_Mutation p.T1320K 0.24 benign(0.15) TCGA-CN-6011-01 6 152841605 152841605 C T SYNE1 Missense_Mutation p.E100K 0.22 probably_damaging(0.995) TCGA-CN-6011-01 6 159653679 159653679 C T FNDC1 Missense_Mutation p.A712V 0.42 tolerated_low_confidence(0.14) unknown(0) TCGA-CN-6011-01 6 160210523 160210523 G A TCP1 5'UTR 0.18 TCGA-CN-6011-01 6 160857877 160857877 G C SLC22A3 Missense_Mutation p.M347I 0.33 tolerated(0.57) probably_damaging(0.996) TCGA-CN-6011-01 6 160864770 160864770 C T SLC22A3 Silent p.I502I 0.60 TCGA-CN-6011-01 6 169640633 169640633 T G THBS2 Missense_Mutation p.N316H 0.54 tolerated_low_confidence(0.27) possibly_damaging(0.823) TCGA-CN-6011-01 6 24698242 24698242 T C ACOT13 Silent p.A71A 0.26 TCGA-CN-6011-01 6 26156595 26156595 C G HIST1H1E 5'UTR 0.25 TCGA-CN-6011-01 6 26225674 26225674 G A HIST1H3E Missense_Mutation p.E98K 0.29 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-CN-6011-01 6 27776351 27776351 G C HIST1H2AI Missense_Mutation p.E122Q 0.56 tolerated_low_confidence(0.07) benign(0.136) TCGA-CN-6011-01 6 29588923 29588923 C G GABBR1 Missense_Mutation p.E426D 0.25 tolerated(0.15) probably_damaging(0.935) TCGA-CN-6011-01 6 31750118 31750118 G C VARS Silent p.L698L 0.29 TCGA-CN-6011-01 6 31759748 31759748 T G VARS Missense_Mutation p.D291A 0.33 deleterious(0.01) probably_damaging(0.96) TCGA-CN-6011-01 6 32087660 32087660 C T ATF6B Missense_Mutation p.E303K 0.27 tolerated(0.14) probably_damaging(0.995) TCGA-CN-6011-01 6 38830055 38830055 G A DNAH8 Splice_Site p.X1827_splice 0.31 TCGA-CN-6011-01 6 39688494 39688494 C T KIF6 Missense_Mutation p.E54K 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-CN-6011-01 6 43144380 43144380 C T SRF Silent p.L379L 0.17 TCGA-CN-6011-01 6 90353653 90353653 A T MDN1 3'UTR 0.43 TCGA-CN-6011-01 7 103006550 103006550 G C PSMC2 Missense_Mutation p.E262Q 0.45 tolerated(0.63) probably_damaging(0.938) TCGA-CN-6011-01 7 103155675 103155675 G A RELN Silent p.V2692V 0.13 TCGA-CN-6011-01 7 133059592 133059592 G A EXOC4 Missense_Mutation p.E340K 0.29 deleterious(0.01) benign(0.333) TCGA-CN-6011-01 7 138764323 138764323 C G ZC3HAV1 Missense_Mutation p.R455T 0.36 tolerated(0.05) possibly_damaging(0.879) TCGA-CN-6011-01 7 13946217 13946217 G C ETV1 Missense_Mutation p.I316M 0.21 tolerated(0.1) possibly_damaging(0.892) TCGA-CN-6011-01 7 142180656 142180656 G A TRBV6-5 Missense_Mutation p.S68L 0.20 deleterious(0.01) possibly_damaging(0.558) TCGA-CN-6011-01 7 148947893 148947893 C G ZNF212 Missense_Mutation p.S179C 0.28 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 7 150554438 150554438 C A AOC1 Missense_Mutation p.P294T 0.56 tolerated(0.06) benign(0.02) TCGA-CN-6011-01 7 16902261 16902261 G A AGR3 Missense_Mutation p.H67Y 0.15 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 7 20762686 20762686 G T ABCB5 Missense_Mutation p.M823I 0.30 tolerated(0.5) benign(0.121) TCGA-CN-6011-01 7 21599363 21599363 G C DNAH11 Missense_Mutation p.D279H 0.44 benign(0.028) TCGA-CN-6011-01 7 33388766 33388766 C T BBS9 Silent p.F472F 0.15 TCGA-CN-6011-01 7 34118611 34118611 C G BMPER Missense_Mutation p.N407K 0.35 deleterious(0) probably_damaging(0.999) TCGA-CN-6011-01 7 38812139 38812139 C G VPS41 Missense_Mutation p.E371Q 0.18 tolerated(0.3) benign(0.007) TCGA-CN-6011-01 7 4308174 4308174 C T SDK1 3'UTR 0.29 TCGA-CN-6011-01 7 47319949 47319949 G C TNS3 Silent p.L1367L 0.20 TCGA-CN-6011-01 7 50450284 50450284 G A IKZF1 Silent p.Q156Q 0.16 TCGA-CN-6011-01 7 51261114 51261114 C T COBL Missense_Mutation p.E140K 0.16 deleterious(0) probably_damaging(0.999) TCGA-CN-6011-01 7 70252204 70252204 C G AUTS2 Nonsense_Mutation p.S773* 0.25 TCGA-CN-6011-01 7 83610791 83610791 G T SEMA3A Missense_Mutation p.Q500K 0.31 deleterious(0.02) benign(0.041) TCGA-CN-6011-01 7 91503289 91503289 C G MTERF Silent p.L273L 0.18 TCGA-CN-6011-01 7 93098029 93098029 G A CALCR Silent p.F191F 0.15 TCGA-CN-6011-01 7 94052411 94052411 C T COL1A2 Missense_Mutation p.S849F 0.14 unknown(0) TCGA-CN-6011-01 7 99753354 99753354 C T C7orf43 Silent p.R445R 0.19 TCGA-CN-6011-01 8 10683716 10683716 C T SOX7 Missense_Mutation p.E114K 0.60 deleterious(0.01) probably_damaging(0.977) TCGA-CN-6011-01 8 110655123 110655123 A G SYBU Silent p.S21S 0.32 TCGA-CN-6011-01 8 119945204 119945204 C T TNFRSF11B Silent p.R122R 0.27 TCGA-CN-6011-01 8 133041345 133041345 C A OC90 Silent p.V371V 0.57 TCGA-CN-6011-01 8 14022158 14022158 C T SGCZ Missense_Mutation p.D160N 0.30 tolerated(0.3) benign(0.045) TCGA-CN-6011-01 8 142432312 142432312 C T PTP4A3 5'UTR 0.23 TCGA-CN-6011-01 8 144413487 144413487 C T TOP1MT Missense_Mutation p.D49N 0.67 tolerated(0.11) benign(0.009) TCGA-CN-6011-01 8 145948062 145948062 C T ZNF251 Missense_Mutation p.R328K 0.59 tolerated(1) benign(0.129) TCGA-CN-6011-01 8 145948232 145948232 C T ZNF251 Silent p.G271G 0.56 TCGA-CN-6011-01 8 32505429 32505429 G A NRG1 Intron 0.32 TCGA-CN-6011-01 8 55537868 55537868 C G RP1 Missense_Mutation p.Q476E 0.29 tolerated(0.08) benign(0.012) TCGA-CN-6011-01 8 56985678 56985678 C T RPS20 Missense_Mutation p.E111K 0.35 tolerated(0.11) benign(0.219) TCGA-CN-6011-01 8 67341837 67341837 G A RRS1 Silent p.L157L 0.39 TCGA-CN-6011-01 8 86360296 86360296 G A CA3 Missense_Mutation p.E233K 0.45 deleterious(0.02) probably_damaging(0.989) TCGA-CN-6011-01 8 97620608 97620608 G C SDC2 Missense_Mutation p.E118Q 0.18 tolerated(0.38) benign(0.405) TCGA-CN-6011-01 9 103340680 103340680 C T MURC Silent p.I85I 0.27 TCGA-CN-6011-01 9 111617356 111617356 G A ACTL7B Silent p.D285D 0.71 TCGA-CN-6011-01 9 114090514 114090514 G C OR2K2 Missense_Mutation p.S67C 0.36 deleterious(0) probably_damaging(0.954) TCGA-CN-6011-01 9 116152945 116152945 C T ALAD Missense_Mutation p.E137K 0.33 tolerated(0.26) benign(0.001) TCGA-CN-6011-01 9 116794974 116794974 T G ZNF618 Missense_Mutation p.F285L 0.35 tolerated_low_confidence(0.87) benign(0.006) TCGA-CN-6011-01 9 128678148 128678148 G A PBX3 Missense_Mutation p.R153K 0.23 tolerated(0.08) benign(0.247) TCGA-CN-6011-01 9 130119513 130119513 G C GARNL3 Missense_Mutation p.D651H 0.48 deleterious(0) probably_damaging(1) TCGA-CN-6011-01 9 130119609 130119609 G C GARNL3 Missense_Mutation p.E683Q 0.44 tolerated(0.07) probably_damaging(1) TCGA-CN-6011-01 9 130494180 130494180 C G TOR2A 3'UTR 0.25 TCGA-CN-6011-01 9 130912695 130912695 C T LCN2 Intron 0.13 TCGA-CN-6011-01 9 134073419 134073419 C T NUP214 Missense_Mutation p.S1513L 0.12 benign(0.002) TCGA-CN-6011-01 9 139401080 139401080 C T NOTCH1 Missense_Mutation p.E1305K 0.45 deleterious(0.03) benign(0.283) TCGA-CN-6011-01 9 16436013 16436013 C G BNC2 Missense_Mutation p.E727Q 0.77 tolerated(0.2) benign(0.255) TCGA-CN-6011-01 9 19058235 19058235 G C HAUS6 Missense_Mutation p.L844V 0.07 tolerated(0.22) benign(0.023) TCGA-CN-6011-01 9 33675981 33675981 C G PTENP1 RNA 0.18 TCGA-CN-6011-01 9 35092757 35092757 C T PIGO Missense_Mutation p.R376Q 0.60 tolerated(0.07) probably_damaging(0.999) TCGA-CN-6011-01 9 43627116 43627116 G A SPATA31A6 Missense_Mutation p.S524L 0.16 tolerated(0.13) benign(0.006) TCGA-CN-6011-01 9 6007497 6007497 G A KIAA2026 Silent p.L97L 0.15 TCGA-CN-6011-01 9 74347373 74347373 C G TMEM2 Missense_Mutation p.G486A 0.29 tolerated(0.1) possibly_damaging(0.467) TCGA-CN-6011-01 9 91963111 91963111 G A SECISBP2 Missense_Mutation p.E574K 0.22 tolerated(0.7) benign(0.002) TCGA-CN-6011-01 9 92003801 92003801 G A SEMA4D Silent p.L312L 0.22 TCGA-CN-6011-01 9 92017921 92017921 C T SEMA4D Silent p.L39L 0.19 TCGA-CN-6011-01 9 95062221 95062221 C G NOL8 Missense_Mutation p.E1085Q 0.23 deleterious(0) possibly_damaging(0.821) TCGA-CN-6011-01 X 100496666 100496666 C T DRP2 Missense_Mutation p.P190L 0.21 deleterious(0) possibly_damaging(0.559) TCGA-CN-6011-01 X 105179293 105179293 G T NRK Nonsense_Mutation p.E1212* 0.65 TCGA-CN-6011-01 X 114540829 114540829 G A LUZP4 Silent p.G134G 0.43 TCGA-CN-6011-01 X 120183061 120183061 C G GLUD2 Missense_Mutation p.S508C 0.58 deleterious(0.01) probably_damaging(0.991) TCGA-CN-6011-01 X 135427079 135427079 C G GPR112 Nonsense_Mutation p.S405* 0.35 TCGA-CN-6011-01 X 148628500 148628500 G C CXorf40A Missense_Mutation p.E157Q 0.31 deleterious(0.01) benign(0.295) TCGA-CN-6011-01 X 149100746 149100746 C T CXorf40B 3'UTR 0.12 TCGA-CN-6011-01 X 149100770 149100770 C G CXorf40B Missense_Mutation p.E157Q 0.13 deleterious_low_confidence(0.01) benign(0.11) TCGA-CN-6011-01 X 153035337 153035337 C G PLXNB3 Missense_Mutation p.H547Q 0.42 tolerated(1) benign(0.004) TCGA-CN-6011-01 X 1546872 1546872 C G ASMTL Missense_Mutation p.E218Q 0.29 tolerated(0.28) benign(0.011) TCGA-CN-6011-01 X 17745088 17745088 G C NHS Missense_Mutation p.L933F 0.82 deleterious(0.05) probably_damaging(0.996) TCGA-CN-6011-01 X 17762333 17762333 C G SCML1 Missense_Mutation p.I9M 0.38 tolerated(0.1) possibly_damaging(0.831) TCGA-CN-6011-01 X 17768106 17768106 C G SCML1 Silent p.S132S 0.34 TCGA-CN-6011-01 X 2406643 2406643 C A ZBED1 3'UTR 0.75 TCGA-CN-6011-01 X 35820840 35820840 C G MAGEB16 Missense_Mutation p.T176S 0.35 tolerated(0.28) benign(0.11) TCGA-CN-6011-01 X 35820841 35820841 C A MAGEB16 Silent p.T176T 0.37 TCGA-CN-6011-01 X 49768117 49768117 C G CLCN5 Intron 0.91 TCGA-CN-6011-01 X 76776376 76776376 G A ATRX Missense_Mutation p.L2364F 0.68 probably_damaging(0.979) TCGA-CN-6011-01 X 78010388 78010388 G A LPAR4 Missense_Mutation p.D8N 0.39 tolerated_low_confidence(0.31) benign(0) TCGA-CN-6012-01 10 103900410 103900410 C T PPRC1 Silent p.S715S 0.13 TCGA-CN-6012-01 10 108923927 108923927 G A SORCS1 Missense_Mutation p.R120W 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-CN-6012-01 10 15649678 15649678 G A ITGA8 Nonsense_Mutation p.R588* 0.09 TCGA-CN-6012-01 10 16882891 16882891 G A CUBN Silent p.I3273I 0.18 TCGA-CN-6012-01 10 17905662 17905662 C T MRC1L1 Missense_Mutation p.R585W 0.36 possibly_damaging(0.466) TCGA-CN-6012-01 10 445090 445090 C T DIP2C Missense_Mutation p.E407K 0.13 tolerated(0.24) probably_damaging(0.915) TCGA-CN-6012-01 10 44876302 44876302 A G CXCL12 Missense_Mutation p.C30R 0.11 deleterious(0) probably_damaging(0.999) TCGA-CN-6012-01 10 50732560 50732560 C A ERCC6-PGBD3 Missense_Mutation p.A306S 0.36 tolerated_low_confidence(1) benign(0.018) TCGA-CN-6012-01 11 26529794 26529794 G C ANO3 Missense_Mutation p.L192F 0.47 deleterious(0) probably_damaging(0.999) TCGA-CN-6012-01 11 48346829 48346829 G A OR4C3 Missense_Mutation p.E113K 0.10 tolerated(0.09) benign(0.011) TCGA-CN-6012-01 11 55944828 55944828 G T OR5J2 Silent p.L245L 0.11 TCGA-CN-6012-01 11 56000661 56000661 T C OR5T2 Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0) benign(0.019) TCGA-CN-6012-01 11 612611 612611 C T IRF7 3'UTR 0.10 TCGA-CN-6012-01 11 70172809 70172809 G C PPFIA1 Missense_Mutation p.R272P 0.07 deleterious(0) probably_damaging(0.913) TCGA-CN-6012-01 12 104337038 104337038 G T HSP90B1 Missense_Mutation p.V611F 0.31 tolerated(0.06) benign(0.116) TCGA-CN-6012-01 12 11091182 11091182 G C TAS2R14 Missense_Mutation p.R209G 0.15 deleterious(0.01) benign(0.029) TCGA-CN-6012-01 12 14976222 14976222 C T C12orf60 Missense_Mutation p.A118V 0.04 tolerated(0.86) benign(0.005) TCGA-CN-6012-01 12 333173 333173 C G SLC6A13 Silent p.L432L 0.06 TCGA-CN-6012-01 12 53086338 53086338 C G KRT77 Missense_Mutation p.E432Q 0.18 tolerated(0.07) possibly_damaging(0.74) TCGA-CN-6012-01 12 60169150 60169150 C G SLC16A7 Silent p.L358L 0.12 TCGA-CN-6012-01 12 70206629 70206629 A C RAB3IP Missense_Mutation p.Y417S 0.28 deleterious(0) probably_damaging(0.954) TCGA-CN-6012-01 13 113481200 113481200 G A ATP11A Missense_Mutation p.G406R 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-6012-01 13 49076892 49076892 G A RCBTB2 Missense_Mutation p.T362M 0.08 deleterious(0.02) probably_damaging(0.912) TCGA-CN-6012-01 13 99047720 99047720 G A FARP1 Silent p.Q468Q 0.44 TCGA-CN-6012-01 14 100376629 100376629 T G EML1 Silent p.G449G 0.13 TCGA-CN-6012-01 14 102964599 102964599 G T TECPR2 3'UTR 0.24 TCGA-CN-6012-01 14 106091091 106091091 C T IGHG4 Missense_Mutation p.E236K 0.09 deleterious(0.01) benign(0.312) TCGA-CN-6012-01 14 20665703 20665703 C A OR11G2 Missense_Mutation p.T70N 0.54 tolerated(0.12) benign(0.09) TCGA-CN-6012-01 14 64491050 64491050 C T SYNE2 Silent p.L1905L 0.42 TCGA-CN-6012-01 14 71543136 71543136 G T PCNX Missense_Mutation p.K1779N 0.25 deleterious(0.01) probably_damaging(0.95) TCGA-CN-6012-01 14 76905925 76905925 G A ESRRB Missense_Mutation p.E77K 0.11 deleterious(0.01) benign(0.006) TCGA-CN-6012-01 14 77715746 77715746 C G TMEM63C Missense_Mutation p.I661M 0.15 tolerated(0.2) benign(0.038) TCGA-CN-6012-01 15 40313219 40313219 C T EIF2AK4 Silent p.D1431D 0.12 TCGA-CN-6012-01 15 42703502 42703502 G C CAPN3 Missense_Mutation p.D800H 0.21 deleterious(0) probably_damaging(0.994) TCGA-CN-6012-01 15 76452436 76452436 T C C15orf27 Missense_Mutation p.F128S 0.18 deleterious(0.02) probably_damaging(0.981) TCGA-CN-6012-01 16 55601269 55601269 G C CAPNS2 Missense_Mutation p.D201H 0.06 tolerated(0.37) benign(0.008) TCGA-CN-6012-01 16 57954416 57954416 G T CNGB1 Missense_Mutation p.T559K 0.08 deleterious(0.03) benign(0.065) TCGA-CN-6012-01 16 71779057 71779057 G A AP1G1 Silent p.I666I 0.06 TCGA-CN-6012-01 17 1183425 1183425 T C TUSC5 Missense_Mutation p.S44P 0.29 deleterious(0.03) benign(0.025) TCGA-CN-6012-01 17 27417044 27417044 C G MYO18A Missense_Mutation p.E1821Q 0.12 deleterious(0.02) possibly_damaging(0.681) TCGA-CN-6012-01 17 36483564 36483564 G A GPR179 Missense_Mutation p.T1963I 0.32 tolerated(0.39) benign(0.002) TCGA-CN-6012-01 17 40839831 40839831 C T CNTNAP1 Missense_Mutation p.R380C 0.06 deleterious(0.02) probably_damaging(0.927) TCGA-CN-6012-01 17 47656507 47656507 G T NXPH3 Missense_Mutation p.D202Y 0.20 deleterious(0) probably_damaging(0.942) TCGA-CN-6012-01 17 56349077 56349077 C T MPO Missense_Mutation p.V657M 0.32 deleterious(0) probably_damaging(0.992) TCGA-CN-6012-01 17 7403976 7403976 C A POLR2A Missense_Mutation p.L564M 0.21 probably_damaging(0.998) TCGA-CN-6012-01 17 7578553 7578553 T G TP53 Missense_Mutation p.Y126S 0.42 deleterious(0) probably_damaging(1) TCGA-CN-6012-01 17 80320301 80320302 - G TEX19 Frame_Shift_Ins p.S95Lfs*2 0.15 TCGA-CN-6012-01 17 8249207 8249207 C A ODF4 3'UTR 0.21 TCGA-CN-6012-01 18 12310986 12310986 G A TUBB6 Missense_Mutation p.G71S 0.08 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-CN-6012-01 18 34853090 34853090 C A CELF4 Missense_Mutation p.A280S 0.60 tolerated(0.44) possibly_damaging(0.564) TCGA-CN-6012-01 18 9559423 9559424 - T PPP4R1 Frame_Shift_Ins p.D674Efs*35 0.34 TCGA-CN-6012-01 19 10610402 10610402 G T KEAP1 Missense_Mutation p.S103Y 0.30 deleterious(0) probably_damaging(0.981) TCGA-CN-6012-01 19 11568882 11568882 C T ELAVL3 Missense_Mutation p.R236H 0.27 deleterious(0.01) probably_damaging(0.97) TCGA-CN-6012-01 19 12061085 12061085 G T ZNF700 3'UTR 0.12 TCGA-CN-6012-01 19 12126212 12126212 G T ZNF433 Silent p.P490P 0.16 TCGA-CN-6012-01 19 14153306 14153306 G C IL27RA Missense_Mutation p.E192D 0.23 deleterious(0.02) benign(0.263) TCGA-CN-6012-01 19 18685943 18685945 AAG - UBA52 In_Frame_Del p.K126del 0.19 TCGA-CN-6012-01 19 22156075 22156075 G T ZNF208 Silent p.G587G 0.06 TCGA-CN-6012-01 19 36727853 36727922 CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT - ZNF146 Frame_Shift_Del p.I172Sfs*9 0.28 TCGA-CN-6012-01 19 36831737 36831737 G A ZFP14 Nonsense_Mutation p.Q331* 0.15 TCGA-CN-6012-01 19 37311007 37311007 G A ZNF790 Missense_Mutation p.S80L 0.14 tolerated(0.06) benign(0.026) TCGA-CN-6012-01 19 37976077 37976077 G A ZNF570 Missense_Mutation p.R518K 0.11 tolerated(0.32) benign(0.001) TCGA-CN-6012-01 19 40364231 40364231 C A FCGBP Missense_Mutation p.G4804V 0.20 probably_damaging(0.995) TCGA-CN-6012-01 19 4366921 4366921 A G SH3GL1 Splice_Site p.X38_splice 0.12 TCGA-CN-6012-01 19 47423337 47423337 G T ARHGAP35 Nonsense_Mutation p.E469* 0.67 TCGA-CN-6012-01 19 58238851 58238851 G A ZNF671 Missense_Mutation p.R16W 0.32 deleterious_low_confidence(0.02) benign(0) TCGA-CN-6012-01 1 109167328 109167328 A G FAM102B Missense_Mutation p.R172G 0.39 tolerated(0.24) benign(0.156) TCGA-CN-6012-01 1 156046882 156046882 G A MEX3A Missense_Mutation p.S349F 0.07 deleterious(0) benign(0.302) TCGA-CN-6012-01 1 159888847 159888847 C T TAGLN2 Intron 0.29 TCGA-CN-6012-01 1 161642856 161642856 C G FCGR2B Silent p.V161V 0.19 TCGA-CN-6012-01 1 197091047 197091047 G A ASPM Nonsense_Mutation p.Q1290* 0.06 TCGA-CN-6012-01 1 240256692 240256692 C T FMN2 Missense_Mutation p.S428L 0.08 unknown(0) TCGA-CN-6012-01 1 242016725 242016725 G C EXO1 Missense_Mutation p.R116P 0.12 deleterious(0) probably_damaging(0.993) TCGA-CN-6012-01 1 2985742 2985742 C G PRDM16 5'Flank 0.21 TCGA-CN-6012-01 1 41481649 41481649 T C SLFNL1 3'UTR 0.46 TCGA-CN-6012-01 1 91727880 91727880 C T HFM1 Missense_Mutation p.E1386K 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-CN-6012-01 1 91728133 91728133 C G HFM1 Missense_Mutation p.E1331Q 0.12 tolerated_low_confidence(0.17) benign(0.007) TCGA-CN-6012-01 1 9784117 9784117 C T PIK3CD Silent p.H895H 0.49 TCGA-CN-6012-01 20 18794599 18794599 T A SCP2D1 Missense_Mutation p.V47E 0.34 deleterious(0) possibly_damaging(0.883) TCGA-CN-6012-01 20 34285652 34285652 T C NFS1 Missense_Mutation p.H93R 0.17 deleterious(0) probably_damaging(1) TCGA-CN-6012-01 20 45353864 45353864 G T SLC2A10 Silent p.L63L 0.25 TCGA-CN-6012-01 21 28302210 28302210 C G ADAMTS5 Missense_Mutation p.K740N 0.07 deleterious(0.05) possibly_damaging(0.685) TCGA-CN-6012-01 21 37741775 37741775 A - MORC3 Frame_Shift_Del p.L704Sfs*29 0.30 TCGA-CN-6012-01 22 29707103 29707103 C A GAS2L1 3'UTR 0.27 TCGA-CN-6012-01 22 37271924 37271924 A C NCF4 Missense_Mutation p.K286T 0.05 deleterious_low_confidence(0) benign(0.403) TCGA-CN-6012-01 22 38075659 38075659 G T LGALS1 Missense_Mutation p.G104V 0.16 deleterious(0) probably_damaging(0.97) TCGA-CN-6012-01 22 46088932 46088932 G A ATXN10 Missense_Mutation p.R122Q 0.13 tolerated(0.95) benign(0.005) TCGA-CN-6012-01 22 46653801 46653801 G A PKDREJ Silent p.L1807L 0.10 TCGA-CN-6012-01 22 46760506 46760506 G A CELSR1 Silent p.R2894R 0.19 TCGA-CN-6012-01 22 50216800 50216800 G A BRD1 Missense_Mutation p.T389M 0.10 deleterious(0.03) benign(0.221) TCGA-CN-6012-01 2 149850992 149850992 A G KIF5C Missense_Mutation p.R655G 0.20 deleterious(0) probably_damaging(1) TCGA-CN-6012-01 2 152289598 152289598 A G RIF1 Silent p.L311L 0.18 TCGA-CN-6012-01 2 152363454 152363454 C T NEB Missense_Mutation p.R7842H 0.30 probably_damaging(0.989) TCGA-CN-6012-01 2 178481329 178481329 G A TTC30A 3'UTR 0.23 TCGA-CN-6012-01 2 233274348 233274348 C T ALPPL2 Silent p.D455D 0.28 TCGA-CN-6012-01 2 24413501 24413501 G A FAM228A 3'UTR 0.21 TCGA-CN-6012-01 2 26455030 26455030 T C HADHA Missense_Mutation p.M191V 0.27 deleterious(0.01) benign(0.217) TCGA-CN-6012-01 2 32445857 32445857 G C SLC30A6 3'UTR 0.13 TCGA-CN-6012-01 3 108344785 108344785 G T DZIP3 Nonsense_Mutation p.G184* 0.14 TCGA-CN-6012-01 3 113672564 113672564 C A ZDHHC23 Missense_Mutation p.S60Y 0.18 deleterious(0.03) probably_damaging(0.91) TCGA-CN-6012-01 3 121186390 121186390 G A POLQ Nonsense_Mutation p.R2315* 0.29 TCGA-CN-6012-01 3 127395182 127395182 C T ABTB1 Missense_Mutation p.R130C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CN-6012-01 3 130380658 130380658 C T COL6A6 Missense_Mutation p.T2003I 0.18 tolerated(0.34) probably_damaging(0.941) TCGA-CN-6012-01 3 148880100 148880100 G C HPS3 Missense_Mutation p.E758Q 0.07 tolerated(0.11) probably_damaging(0.969) TCGA-CN-6012-01 3 157820503 157820503 C T SHOX2 Silent p.L197L 0.05 TCGA-CN-6012-01 3 184429482 184429482 G A MAGEF1 Missense_Mutation p.A43V 0.12 tolerated(0.08) probably_damaging(0.935) TCGA-CN-6012-01 3 196089387 196089387 C T UBXN7 Missense_Mutation p.D336N 0.11 deleterious(0.03) benign(0.146) TCGA-CN-6012-01 4 187539227 187539227 G T FAT1 Nonsense_Mutation p.S2838* 0.45 TCGA-CN-6012-01 4 24529592 24529592 G A DHX15 Silent p.D781D 0.39 TCGA-CN-6012-01 4 73156643 73156643 G T ADAMTS3 Missense_Mutation p.R954S 0.45 deleterious(0) possibly_damaging(0.522) TCGA-CN-6012-01 5 120021745 120021745 G T PRR16 Missense_Mutation p.G63C 0.12 deleterious_low_confidence(0.02) probably_damaging(0.957) TCGA-CN-6012-01 5 140307589 140307589 C G PCDHAC1 Missense_Mutation p.S371C 0.39 deleterious(0.02) possibly_damaging(0.864) TCGA-CN-6012-01 5 153026599 153026599 C T GRIA1 Missense_Mutation p.P121L 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-CN-6012-01 5 19483429 19483429 G A CDH18 Silent p.L621L 0.31 TCGA-CN-6012-01 5 23510095 23510095 A G PRDM9 Missense_Mutation p.D87G 0.18 deleterious_low_confidence(0) benign(0.053) TCGA-CN-6012-01 5 24537631 24537631 G A CDH10 Silent p.R128R 0.32 TCGA-CN-6012-01 5 3599777 3599777 G T IRX1 Missense_Mutation p.D239Y 0.33 deleterious(0) benign(0.308) TCGA-CN-6012-01 5 37371102 37371102 G A NUP155 5'UTR 0.09 TCGA-CN-6012-01 5 44811123 44811123 C T MRPS30 Missense_Mutation p.P205L 0.08 tolerated(0.09) benign(0.023) TCGA-CN-6012-01 5 484690 484690 T C SLC9A3 Missense_Mutation p.I293V 0.13 tolerated(0.1) benign(0.026) TCGA-CN-6012-01 5 89695349 89695349 C A CETN3 Nonsense_Mutation p.E96* 0.26 TCGA-CN-6012-01 6 151859254 151859254 C G CCDC170 Nonsense_Mutation p.Y87* 0.13 TCGA-CN-6012-01 6 151936746 151936746 G T CCDC170 Nonsense_Mutation p.E627* 0.31 TCGA-CN-6012-01 6 26056533 26056533 C G HIST1H1C Missense_Mutation p.E42Q 0.10 tolerated(0.15) possibly_damaging(0.688) TCGA-CN-6012-01 6 27834613 27834613 C G HIST1H1B 3'UTR 0.11 TCGA-CN-6012-01 6 29323824 29323824 A G OR5V1 Missense_Mutation p.V50A 0.14 tolerated(0.52) benign(0.002) TCGA-CN-6012-01 6 32171962 32171962 G T NOTCH4 Missense_Mutation p.H1024N 0.10 tolerated(0.22) benign(0.405) TCGA-CN-6012-01 6 42231078 42231078 C A TRERF1 Missense_Mutation p.D622Y 0.08 deleterious(0) possibly_damaging(0.861) TCGA-CN-6012-01 6 7370283 7370283 G A CAGE1 Missense_Mutation p.H588Y 0.16 tolerated(0.08) benign(0.027) TCGA-CN-6012-01 6 88854382 88854382 C T CNR1 Silent p.V204V 0.09 TCGA-CN-6012-01 7 100473251 100473274 GACAAGTTCAGAAGAGAGCGCAGC - SRRT In_Frame_Del p.K15_D22del 0.40 TCGA-CN-6012-01 7 122341901 122341901 T C RNF148 Missense_Mutation p.I302V 0.06 tolerated(0.07) benign(0.005) TCGA-CN-6012-01 7 23286502 23286502 G A GPNMB Missense_Mutation p.G9E 0.36 deleterious(0) probably_damaging(0.999) TCGA-CN-6012-01 7 27194647 27194647 C T HOXA7 Missense_Mutation p.E192K 0.08 tolerated(0.37) unknown(0) TCGA-CN-6012-01 8 104394752 104394752 C G CTHRC1 Nonsense_Mutation p.S219* 0.07 TCGA-CN-6012-01 8 126114571 126114571 A C NSMCE2 5'UTR 0.04 TCGA-CN-6012-01 8 145740836 145740836 C T RECQL4 Missense_Mutation p.E422K 0.07 tolerated(0.19) benign(0.015) TCGA-CN-6012-01 8 67958147 67958147 C G COPS5 Missense_Mutation p.E274Q 0.06 tolerated(0.29) benign(0.133) TCGA-CN-6012-01 8 70744677 70744677 G C SLCO5A1 Missense_Mutation p.P78A 0.47 tolerated_low_confidence(0.23) benign(0.005) TCGA-CN-6012-01 9 21971096 21971096 C A CDKN2A Nonsense_Mutation p.E88* 0.32 TCGA-CN-6012-01 9 79324742 79324742 C T PRUNE2 Nonsense_Mutation p.W816* 0.21 TCGA-CN-6012-01 9 90502130 90502130 A G SPATA31E1 Missense_Mutation p.S910G 0.07 tolerated(0.09) benign(0.039) TCGA-CN-6012-01 9 98239831 98239831 G C PTCH1 Missense_Mutation p.Q501E 0.12 deleterious(0) possibly_damaging(0.85) TCGA-CN-6012-01 X 104993010 104993010 T C IL1RAPL2 Missense_Mutation p.V369A 0.12 tolerated(0.12) benign(0.005) TCGA-CN-6012-01 X 136113430 136113430 T C GPR101 Missense_Mutation p.H135R 0.33 deleterious(0) probably_damaging(0.996) TCGA-CN-6012-01 X 144906200 144906200 G C SLITRK2 Missense_Mutation p.E753Q 0.11 tolerated(0.21) benign(0.119) TCGA-CN-6012-01 X 16142365 16142365 G A GRPR Missense_Mutation p.D97N 0.57 deleterious(0.01) probably_damaging(1) TCGA-CN-6012-01 X 6069195 6069195 G T NLGN4X Missense_Mutation p.Q105K 0.25 tolerated(0.44) benign(0.055) TCGA-CN-6012-01 X 6451723 6451723 G A VCX3A 3'UTR 0.18 TCGA-CN-6013-01 10 104172143 104172143 G A PSD Silent p.G581G 0.08 TCGA-CN-6013-01 10 104184420 104184420 G A CUEDC2 Silent p.F68F 0.14 TCGA-CN-6013-01 10 105819448 105819448 T - COL17A1 Frame_Shift_Del p.E391Kfs*12 0.31 TCGA-CN-6013-01 10 121685713 121685713 G A SEC23IP Missense_Mutation p.E763K 0.17 tolerated(0.18) benign(0.066) TCGA-CN-6013-01 10 121689932 121689932 G C SEC23IP Missense_Mutation p.R854T 0.17 deleterious(0) probably_damaging(0.992) TCGA-CN-6013-01 10 124608956 124608956 C G CUZD1 Splice_Site 0.16 TCGA-CN-6013-01 10 38407109 38407109 C T ZNF37A Nonsense_Mutation p.Q344* 0.12 TCGA-CN-6013-01 10 48388281 48388281 G A RBP3 Missense_Mutation p.T866M 0.15 deleterious(0.01) probably_damaging(0.938) TCGA-CN-6013-01 10 6257227 6257227 C T PFKFB3 Silent p.Y82Y 0.25 TCGA-CN-6013-01 10 74628472 74628472 C T MCU Missense_Mutation p.H170Y 0.15 tolerated(0.52) benign(0.006) TCGA-CN-6013-01 10 78846273 78846273 G A KCNMA1 Silent p.L471L 0.17 TCGA-CN-6013-01 11 10794110 10794110 C T CTR9 Missense_Mutation p.R830W 0.26 deleterious(0) probably_damaging(0.985) TCGA-CN-6013-01 11 118362545 118362545 C T KMT2A Nonsense_Mutation p.R1636* 0.30 TCGA-CN-6013-01 11 15222370 15222370 G A INSC Missense_Mutation p.E279K 0.11 deleterious(0.03) possibly_damaging(0.892) TCGA-CN-6013-01 11 46393102 46393102 C T DGKZ Silent p.H424H 0.24 TCGA-CN-6013-01 11 55406208 55406208 C T OR4P4 Silent p.C125C 0.17 TCGA-CN-6013-01 11 606519 606519 C G PHRF1 Missense_Mutation p.S510W 0.17 deleterious(0) probably_damaging(0.998) TCGA-CN-6013-01 11 613228 613228 G A IRF7 Silent p.F418F 0.25 TCGA-CN-6013-01 11 62037635 62037635 G C SCGB2A2 5'UTR 0.05 TCGA-CN-6013-01 11 64029989 64029989 G A PLCB3 Missense_Mutation p.E717K 0.30 deleterious(0.05) possibly_damaging(0.814) TCGA-CN-6013-01 12 113544929 113544929 G A RASAL1 Missense_Mutation p.R545W 0.30 deleterious(0) possibly_damaging(0.761) TCGA-CN-6013-01 12 131475580 131475580 C T GPR133 Missense_Mutation p.S256L 0.24 deleterious(0.01) benign(0.394) TCGA-CN-6013-01 12 132404541 132404541 G A ULK1 Missense_Mutation p.E941K 0.19 deleterious(0.01) benign(0.243) TCGA-CN-6013-01 12 18719918 18719918 C T PIK3C2G Missense_Mutation p.S1272L 0.12 tolerated(0.98) benign(0.06) TCGA-CN-6013-01 12 21422497 21422497 C T SLCO1A2 Silent p.L666L 0.16 TCGA-CN-6013-01 12 22680820 22680820 C T C2CD5 Missense_Mutation p.D62N 0.11 deleterious(0) probably_damaging(0.948) TCGA-CN-6013-01 12 23818434 23818434 G T SOX5 Missense_Mutation p.A292E 0.38 deleterious(0) possibly_damaging(0.894) TCGA-CN-6013-01 12 26592150 26592150 C T ITPR2 Missense_Mutation p.E2185K 0.13 deleterious(0) possibly_damaging(0.754) TCGA-CN-6013-01 12 32369208 32369208 C T BICD1 Missense_Mutation p.R81W 0.29 deleterious(0) probably_damaging(1) TCGA-CN-6013-01 12 33535294 33535294 C T SYT10 Missense_Mutation p.D454N 0.11 deleterious(0) probably_damaging(0.998) TCGA-CN-6013-01 12 41352971 41352971 G A CNTN1 Missense_Mutation p.R580K 0.19 tolerated(0.79) probably_damaging(0.93) TCGA-CN-6013-01 12 51108292 51108292 C G DIP2B Missense_Mutation p.L922V 0.18 deleterious(0.04) benign(0.217) TCGA-CN-6013-01 12 53201525 53201525 G A KRT4 Nonsense_Mutation p.R417* 0.23 TCGA-CN-6013-01 12 6980481 6980481 C T SPSB2 Missense_Mutation p.E223K 0.12 tolerated(0.06) possibly_damaging(0.719) TCGA-CN-6013-01 12 72094799 72094799 G A TMEM19 3'UTR 0.15 TCGA-CN-6013-01 12 96728558 96728558 A G CDK17 Silent p.D19D 0.19 TCGA-CN-6013-01 13 103514661 103514661 C T BIVM-ERCC5 Missense_Mutation p.L814F 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CN-6013-01 13 39618234 39618234 G A NHLRC3 Missense_Mutation p.M198I 0.18 tolerated(0.1) benign(0.034) TCGA-CN-6013-01 13 70456505 70456505 C A KLHL1 Missense_Mutation p.L379F 0.31 deleterious(0.03) possibly_damaging(0.873) TCGA-CN-6013-01 13 79894788 79894788 C T RBM26 Missense_Mutation p.E971K 0.12 deleterious(0) unknown(0) TCGA-CN-6013-01 13 86368921 86368921 T C SLITRK6 Missense_Mutation p.M575V 0.19 tolerated(0.67) benign(0) TCGA-CN-6013-01 14 101492432 101492432 C T MIR758 RNA 0.26 TCGA-CN-6013-01 14 23940186 23940186 G A NGDN Silent p.K48K 0.22 TCGA-CN-6013-01 14 30095738 30095738 A T PRKD1 Missense_Mutation p.F584I 0.09 deleterious(0) probably_damaging(0.98) TCGA-CN-6013-01 14 36780830 36780830 C A MBIP Missense_Mutation p.A247S 0.29 deleterious(0.01) possibly_damaging(0.894) TCGA-CN-6013-01 14 52496406 52496406 C G NID2 Missense_Mutation p.D754H 0.16 deleterious(0.01) possibly_damaging(0.821) TCGA-CN-6013-01 14 65262207 65262207 G A SPTB Missense_Mutation p.R498C 0.23 deleterious(0.01) probably_damaging(1) TCGA-CN-6013-01 14 71540300 71540300 G A PCNX Missense_Mutation p.E1631K 0.25 deleterious(0) probably_damaging(0.993) TCGA-CN-6013-01 14 92403316 92403316 C T FBLN5 Silent p.Q118Q 0.23 TCGA-CN-6013-01 14 92436014 92436014 C T TRIP11 3'UTR 0.07 TCGA-CN-6013-01 15 42584947 42584947 C G GANC Missense_Mutation p.S115C 0.19 benign(0.005) TCGA-CN-6013-01 15 43766895 43766895 G A TP53BP1 Missense_Mutation p.P386S 0.31 deleterious(0) probably_damaging(1) TCGA-CN-6013-01 15 67482855 67482855 G A SMAD3 Missense_Mutation p.R420H 0.22 tolerated(0.07) benign(0) TCGA-CN-6013-01 15 67664726 67664726 C T IQCH Missense_Mutation p.S344L 0.29 deleterious(0.02) benign(0.039) TCGA-CN-6013-01 15 77473608 77473608 C T PEAK1 Missense_Mutation p.E221K 0.18 deleterious(0) probably_damaging(0.989) TCGA-CN-6013-01 15 91527353 91527353 C T PRC1 Missense_Mutation p.M54I 0.15 deleterious(0.05) possibly_damaging(0.896) TCGA-CN-6013-01 16 14041533 14041533 G C ERCC4 Missense_Mutation p.E694Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-CN-6013-01 16 21069481 21069481 G C DNAH3 Missense_Mutation p.Q1284E 0.14 deleterious(0) probably_damaging(0.986) TCGA-CN-6013-01 16 30594258 30594258 C T ZNF785 Missense_Mutation p.E281K 0.09 tolerated(0.24) benign(0.001) TCGA-CN-6013-01 16 31045559 31045559 C T STX4 Missense_Mutation p.R49W 0.16 deleterious(0) probably_damaging(0.965) TCGA-CN-6013-01 16 3304662 3304662 C T MEFV Missense_Mutation p.G136R 0.14 deleterious(0.01) possibly_damaging(0.907) TCGA-CN-6013-01 16 55801402 55801402 C T CES1P1 RNA 0.16 TCGA-CN-6013-01 16 57994394 57994394 G A CNGB1 Missense_Mutation p.S192L 0.12 tolerated_low_confidence(1) benign(0) TCGA-CN-6013-01 16 72821592 72821592 G A ZFHX3 Missense_Mutation p.S3528L 0.26 unknown(0) TCGA-CN-6013-01 16 72992974 72992974 G A ZFHX3 Silent p.L357L 0.23 TCGA-CN-6013-01 16 89619531 89619531 G A SPG7 Missense_Mutation p.E642K 0.23 tolerated(1) benign(0) TCGA-CN-6013-01 17 10408181 10408181 T G MYH1 Missense_Mutation p.E879D 0.19 deleterious(0.02) benign(0.366) TCGA-CN-6013-01 17 16456726 16456726 C A ZNF287 Missense_Mutation p.A244S 0.25 tolerated(0.6) benign(0.107) TCGA-CN-6013-01 17 16701605 16701605 C T CCDC144A 3'UTR 0.06 TCGA-CN-6013-01 17 18155348 18155348 C A FLII Missense_Mutation p.G404V 0.18 deleterious(0) possibly_damaging(0.806) TCGA-CN-6013-01 17 28548952 28548952 G C SLC6A4 Missense_Mutation p.Q9E 0.26 tolerated_low_confidence(0.67) benign(0) TCGA-CN-6013-01 17 35614787 35614787 C T ACACA Missense_Mutation p.G555D 0.22 deleterious(0) possibly_damaging(0.742) TCGA-CN-6013-01 17 56382487 56382487 C T BZRAP1 Missense_Mutation p.E1827K 0.15 deleterious(0) probably_damaging(0.999) TCGA-CN-6013-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.25 deleterious(0) probably_damaging(0.997) TCGA-CN-6013-01 17 77758352 77758352 C T CBX2 Silent p.L370L 0.12 TCGA-CN-6013-01 17 8285520 8285520 C G RPL26 Missense_Mutation p.E37Q 0.16 deleterious(0.01) possibly_damaging(0.902) TCGA-CN-6013-01 17 8387530 8387530 C T MYH10 Missense_Mutation p.E1701K 0.13 benign(0.342) TCGA-CN-6013-01 17 8792140 8792140 C T PIK3R5 Missense_Mutation p.E322K 0.10 tolerated(0.11) benign(0.272) TCGA-CN-6013-01 18 214778 214778 C A THOC1 Missense_Mutation p.D608Y 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-CN-6013-01 18 2931287 2931287 C T LPIN2 Missense_Mutation p.G475R 0.22 deleterious(0) probably_damaging(1) TCGA-CN-6013-01 18 47810778 47810778 G A CXXC1 Missense_Mutation p.S396L 0.17 deleterious(0) probably_damaging(0.978) TCGA-CN-6013-01 18 54547249 54547249 A G WDR7 Missense_Mutation p.I1127V 0.23 tolerated(0.58) probably_damaging(0.926) TCGA-CN-6013-01 19 14288437 14288437 C T LPHN1 Missense_Mutation p.G64R 0.22 deleterious(0) probably_damaging(0.992) TCGA-CN-6013-01 19 14829870 14829870 C T ZNF333 Silent p.L577L 0.18 TCGA-CN-6013-01 19 23545292 23545292 G A ZNF91 Silent p.F163F 0.27 TCGA-CN-6013-01 19 35249844 35249844 T C ZNF599 3'UTR 0.30 TCGA-CN-6013-01 19 37879380 37879380 G A ZNF527 Silent p.A143A 0.29 TCGA-CN-6013-01 19 39898933 39898933 C G ZFP36 Missense_Mutation p.S198C 0.24 deleterious(0.01) probably_damaging(0.957) TCGA-CN-6013-01 19 41209472 41209472 A C ADCK4 Missense_Mutation p.L258R 0.31 deleterious(0) probably_damaging(1) TCGA-CN-6013-01 19 56436023 56436023 C T NLRP13 Silent p.G130G 0.17 TCGA-CN-6013-01 19 58046527 58046527 G A ZNF549 Missense_Mutation p.E30K 0.16 deleterious(0.03) benign(0.326) TCGA-CN-6013-01 19 5866613 5866613 C T FUT5 Silent p.%3D 0.16 TCGA-CN-6013-01 19 7076392 7076392 G A ZNF557 Missense_Mutation p.G41S 0.16 tolerated(0.09) probably_damaging(0.97) TCGA-CN-6013-01 19 7808012 7808012 G C CD209 Missense_Mutation p.I376M 0.12 deleterious(0) probably_damaging(0.997) TCGA-CN-6013-01 1 117661121 117661121 C G TRIM45 Missense_Mutation p.E253Q 0.16 tolerated(0.14) benign(0.033) TCGA-CN-6013-01 1 145301725 145301725 G A NBPF10 Missense_Mutation p.E332K 0.07 possibly_damaging(0.76) TCGA-CN-6013-01 1 156128225 156128225 C T SEMA4A Missense_Mutation p.T137I 0.19 deleterious(0) probably_damaging(0.976) TCGA-CN-6013-01 1 158390345 158390345 G A OR10K2 Silent p.F104F 0.10 TCGA-CN-6013-01 1 169484729 169484729 C T F5 Missense_Mutation p.G2161R 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CN-6013-01 1 178834726 178834726 C T ANGPTL1 Silent p.G62G 0.06 TCGA-CN-6013-01 1 185953402 185953402 C T HMCN1 Silent p.N964N 0.14 TCGA-CN-6013-01 1 193029108 193029108 C T UCHL5 5'Flank 0.16 TCGA-CN-6013-01 1 197060123 197060123 G C ASPM Missense_Mutation p.H3165D 0.13 tolerated(0.19) benign(0.002) TCGA-CN-6013-01 1 201789046 201789046 C T NAV1 Nonsense_Mutation p.Q1874* 0.09 TCGA-CN-6013-01 1 216373392 216373392 C T USH2A Missense_Mutation p.V1130M 0.20 benign(0.137) TCGA-CN-6013-01 1 248487682 248487682 G A OR2M7 Silent p.L63L 0.15 TCGA-CN-6013-01 1 32696783 32696783 G A EIF3I Missense_Mutation p.E322K 0.18 tolerated(0.78) benign(0.164) TCGA-CN-6013-01 1 46476424 46476424 G A MAST2 Missense_Mutation p.R334Q 0.16 deleterious_low_confidence(0.02) benign(0.093) TCGA-CN-6013-01 1 53370495 53370495 C T ECHDC2 Silent p.Q175Q 0.24 TCGA-CN-6013-01 1 64095639 64095639 A T PGM1 Nonsense_Mutation p.K164* 0.22 TCGA-CN-6013-01 1 75078403 75078403 G A C1orf173 Missense_Mutation p.S364F 0.19 deleterious(0) probably_damaging(0.998) TCGA-CN-6013-01 1 77759639 77759639 G A AK5 Missense_Mutation p.V137I 0.10 tolerated(0.23) benign(0.381) TCGA-CN-6013-01 1 84768891 84768891 G C SAMD13 Missense_Mutation p.E6Q 0.27 deleterious_low_confidence(0.02) benign(0.068) TCGA-CN-6013-01 1 87538634 87538634 C T HS2ST1 Missense_Mutation p.H48Y 0.31 tolerated(1) possibly_damaging(0.474) TCGA-CN-6013-01 20 10620404 10620404 C T JAG1 Silent p.T1133T 0.36 TCGA-CN-6013-01 20 17462559 17462559 G A PCSK2 Nonsense_Mutation p.W587* 0.11 TCGA-CN-6013-01 20 18448227 18448227 C G POLR3F Intron 0.18 TCGA-CN-6013-01 20 2293573 2293573 C T TGM3 Silent p.L190L 0.05 TCGA-CN-6013-01 20 42199697 42199697 C A SGK2 Nonsense_Mutation p.C229* 0.16 TCGA-CN-6013-01 20 43995543 43995543 C T SYS1 Nonsense_Mutation p.R87* 0.41 TCGA-CN-6013-01 20 44663637 44663637 G A SLC12A5 Missense_Mutation p.E58K 0.14 tolerated(0.07) benign(0.341) TCGA-CN-6013-01 20 62562255 62562255 C T DNAJC5 Silent p.L125L 0.07 TCGA-CN-6013-01 21 22881273 22881273 C T NCAM2 Missense_Mutation p.R727W 0.24 deleterious(0) probably_damaging(0.983) TCGA-CN-6013-01 21 41414523 41414523 C T DSCAM Missense_Mutation p.A1821T 0.19 deleterious(0) probably_damaging(1) TCGA-CN-6013-01 21 42817972 42817972 G C MX1 Missense_Mutation p.E393Q 0.19 deleterious(0.04) possibly_damaging(0.513) TCGA-CN-6013-01 21 47404200 47404200 G A COL6A1 Missense_Mutation p.R82Q 0.50 tolerated(0.05) unknown(0) TCGA-CN-6013-01 22 25627807 25627807 G A CRYBB2 3'UTR 0.19 TCGA-CN-6013-01 22 31266528 31266528 C T OSBP2 Silent p.L322L 0.21 TCGA-CN-6013-01 22 36702049 36702049 C T MYH9 Missense_Mutation p.G696S 0.24 probably_damaging(1) TCGA-CN-6013-01 22 37539602 37539602 C T IL2RB Silent p.L54L 0.26 TCGA-CN-6013-01 22 37539642 37539642 C G IL2RB Missense_Mutation p.R41T 0.20 deleterious(0) probably_damaging(0.913) TCGA-CN-6013-01 22 39138356 39138356 C A SUN2 Nonsense_Mutation p.E361* 0.14 TCGA-CN-6013-01 22 49103655 49103655 C T FAM19A5 Missense_Mutation p.T130M 0.43 deleterious(0.04) probably_damaging(1) TCGA-CN-6013-01 22 51160628 51160628 C G SHANK3 Missense_Mutation p.S1472C 0.15 possibly_damaging(0.592) TCGA-CN-6013-01 2 135738407 135738407 G A MAP3K19 Missense_Mutation p.R1302C 0.34 deleterious(0.02) probably_damaging(0.93) TCGA-CN-6013-01 2 138738917 138738917 G T HNMT Intron 0.15 TCGA-CN-6013-01 2 163133418 163133418 C A IFIH1 Nonsense_Mutation p.E695* 0.25 TCGA-CN-6013-01 2 179444106 179444106 C T TTN Missense_Mutation p.D22551N 0.12 TCGA-CN-6013-01 2 179501496 179501496 T G TTN Missense_Mutation p.E13653A 0.30 TCGA-CN-6013-01 2 179516230 179516230 T G TTN Missense_Mutation p.K13166T 0.21 TCGA-CN-6013-01 2 186670078 186670078 G A FSIP2 Missense_Mutation p.D5438N 0.15 benign(0.1) TCGA-CN-6013-01 2 186670088 186670088 C T FSIP2 Missense_Mutation p.S5441F 0.20 probably_damaging(0.999) TCGA-CN-6013-01 2 20145565 20145565 G A WDR35 Silent p.F620F 0.22 TCGA-CN-6013-01 2 20192895 20192895 C G MATN3 Missense_Mutation p.E480Q 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.829) TCGA-CN-6013-01 2 215645669 215645669 G C BARD1 Missense_Mutation p.S310C 0.41 deleterious(0.01) possibly_damaging(0.524) TCGA-CN-6013-01 2 220046144 220046144 G A FAM134A Missense_Mutation p.E280K 0.34 tolerated(0.08) benign(0.266) TCGA-CN-6013-01 2 220149601 220149601 C T DNAJB2 Silent p.A289A 0.29 TCGA-CN-6013-01 2 223423616 223423616 G C SGPP2 Nonstop_Mutation p.*400Sext*12 0.18 TCGA-CN-6013-01 2 238285728 238285728 C T COL6A3 Silent p.A919A 0.24 TCGA-CN-6013-01 2 242135211 242135211 G A ANO7 Missense_Mutation p.R141Q 0.24 deleterious(0.02) possibly_damaging(0.823) TCGA-CN-6013-01 2 54856219 54856219 G C SPTBN1 Missense_Mutation p.E650Q 0.15 tolerated(0.31) probably_damaging(0.974) TCGA-CN-6013-01 2 72945272 72945272 C T EXOC6B Missense_Mutation p.R210H 0.05 deleterious(0.04) probably_damaging(0.996) TCGA-CN-6013-01 3 105269028 105269028 G A ALCAM Missense_Mutation p.E478K 0.03 tolerated(0.39) benign(0.173) TCGA-CN-6013-01 3 108308177 108308177 G C KIAA1524 Missense_Mutation p.Q16E 0.05 deleterious(0.04) benign(0.128) TCGA-CN-6013-01 3 119367224 119367224 G C POPDC2 Missense_Mutation p.Q298E 0.10 tolerated(0.71) benign(0.001) TCGA-CN-6013-01 3 129290406 129290406 G A PLXND1 Silent p.F1094F 0.17 TCGA-CN-6013-01 3 129389276 129389276 G A TMCC1 Missense_Mutation p.R470W 0.17 deleterious(0.02) probably_damaging(0.939) TCGA-CN-6013-01 3 131300471 131300471 C T CPNE4 Silent p.K273K 0.11 TCGA-CN-6013-01 3 140284985 140284985 G A CLSTN2 Missense_Mutation p.D920N 0.59 tolerated(0.09) benign(0.098) TCGA-CN-6013-01 3 145917778 145917778 G A PLSCR4 Missense_Mutation p.S149L 0.17 tolerated(1) benign(0.002) TCGA-CN-6013-01 3 151167020 151167020 G C IGSF10 Missense_Mutation p.S250C 0.12 deleterious(0) probably_damaging(0.973) TCGA-CN-6013-01 3 167742328 167742328 C T GOLIM4 Missense_Mutation p.E616K 0.04 deleterious(0) probably_damaging(0.999) TCGA-CN-6013-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.09 deleterious(0.04) probably_damaging(0.96) TCGA-CN-6013-01 3 184104641 184104641 G A CHRD Silent p.T735T 0.17 TCGA-CN-6013-01 3 197659136 197659136 C G IQCG Missense_Mutation p.E185Q 0.12 deleterious(0.01) probably_damaging(0.939) TCGA-CN-6013-01 3 20017653 20017653 G A RAB5A Missense_Mutation p.D144N 0.17 tolerated(0.16) benign(0.006) TCGA-CN-6013-01 3 47385244 47385244 G A KLHL18 Missense_Mutation p.R513H 0.08 deleterious(0.01) probably_damaging(0.966) TCGA-CN-6013-01 4 123252691 123252691 G C KIAA1109 Missense_Mutation p.L3820F 0.12 benign(0.273) TCGA-CN-6013-01 4 170400665 170400665 C G NEK1 Missense_Mutation p.K676N 0.15 deleterious(0) probably_damaging(0.945) TCGA-CN-6013-01 4 170628303 170628303 G A CLCN3 Missense_Mutation p.D679N 0.21 deleterious(0.02) benign(0.278) TCGA-CN-6013-01 4 5500850 5500850 C T STK32B 3'UTR 0.27 TCGA-CN-6013-01 5 102612274 102612274 C T C5orf30 3'UTR 0.14 TCGA-CN-6013-01 5 137906699 137906699 G A HSPA9 Silent p.T120T 0.26 TCGA-CN-6013-01 5 140788504 140788504 C T PCDHGB6 Silent p.D245D 0.18 TCGA-CN-6013-01 5 150277669 150277669 A G ZNF300 Missense_Mutation p.S90P 0.25 tolerated(0.59) benign(0.001) TCGA-CN-6013-01 5 169812329 169812329 G A KCNMB1 Silent p.L41L 0.27 TCGA-CN-6013-01 5 178557035 178557035 G A ADAMTS2 Silent p.S785S 0.26 TCGA-CN-6013-01 5 24487972 24487972 G T CDH10 Missense_Mutation p.L723I 0.15 tolerated(0.21) benign(0) TCGA-CN-6013-01 5 40834692 40834692 G T RPL37 Nonsense_Mutation p.S7* 0.42 TCGA-CN-6013-01 5 40834693 40834693 A T RPL37 Missense_Mutation p.S7T 0.41 deleterious(0.01) benign(0.394) TCGA-CN-6013-01 5 64064453 64064453 G A SREK1IP1 5'UTR 0.42 TCGA-CN-6013-01 5 64483990 64483990 T C ADAMTS6 Silent p.T921T 0.24 TCGA-CN-6013-01 5 82833070 82833070 C T VCAN Silent p.L1416L 0.36 TCGA-CN-6013-01 6 106973169 106973169 C T AIM1 Silent p.V1032V 0.17 TCGA-CN-6013-01 6 116937941 116937941 G A RSPH4A Missense_Mutation p.G52E 0.12 tolerated_low_confidence(0.38) benign(0.016) TCGA-CN-6013-01 6 136582168 136582168 A T BCLAF1 3'UTR 0.18 TCGA-CN-6013-01 6 152510447 152510447 G A SYNE1 Silent p.I7747I 0.15 TCGA-CN-6013-01 6 152776622 152776622 C T SYNE1 Missense_Mutation p.R944Q 0.05 benign(0.001) TCGA-CN-6013-01 6 166944772 166944772 G A RPS6KA2 Silent p.S90S 0.26 TCGA-CN-6013-01 6 27805967 27805967 A T HIST1H2AK Missense_Mutation p.Y51N 0.11 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CN-6013-01 6 27860925 27860925 C T HIST1H2AM Translation_Start_Site p.M1? 0.51 deleterious_low_confidence(0.01) unknown(0) TCGA-CN-6013-01 6 39513400 39513400 C T KIF6 Missense_Mutation p.A416T 0.37 tolerated(0.18) benign(0.013) TCGA-CN-6013-01 6 66204797 66204797 C T EYS Silent p.V169V 0.28 TCGA-CN-6013-01 6 83818774 83818774 G A DOPEY1 Missense_Mutation p.E156K 0.22 deleterious(0) possibly_damaging(0.728) TCGA-CN-6013-01 6 83847361 83847361 C T DOPEY1 Silent p.S1200S 0.24 TCGA-CN-6013-01 6 88173822 88173822 C G C6ORF165 Missense_Mutation p.P575A 0.23 tolerated(0.23) benign(0.019) TCGA-CN-6013-01 6 93979222 93979222 C T EPHA7 Missense_Mutation p.E536K 0.18 tolerated(0.7) benign(0.158) TCGA-CN-6013-01 7 100463640 100463640 C T SLC12A9 Nonsense_Mutation p.Q720* 0.09 TCGA-CN-6013-01 7 111400292 111400292 G A DOCK4 Silent p.I1360I 0.10 TCGA-CN-6013-01 7 120629789 120629789 G C CPED1 Silent p.S38S 0.15 TCGA-CN-6013-01 7 142651327 142651327 C T KEL Missense_Mutation p.E290K 0.10 tolerated(0.12) benign(0.271) TCGA-CN-6013-01 7 151900145 151900145 C T KMT2C Nonsense_Mutation p.W1322* 0.23 TCGA-CN-6013-01 7 48068550 48068550 G C SUN3 5'UTR 0.15 TCGA-CN-6013-01 7 6731675 6731675 T A ZNF12 Missense_Mutation p.N300Y 0.15 tolerated(0.08) possibly_damaging(0.797) TCGA-CN-6013-01 7 6731957 6731957 G C ZNF12 Missense_Mutation p.L206V 0.18 tolerated(0.21) benign(0) TCGA-CN-6013-01 7 6776924 6776924 G A PMS2CL RNA 0.32 TCGA-CN-6013-01 7 73663387 73663387 G A RFC2 Missense_Mutation p.P96L 0.19 deleterious(0.05) benign(0.034) TCGA-CN-6013-01 7 83029401 83029401 C A SEMA3E Missense_Mutation p.A437S 0.17 deleterious(0) possibly_damaging(0.882) TCGA-CN-6013-01 7 90896207 90896207 G A FZD1 3'UTR 0.12 TCGA-CN-6013-01 7 98601841 98601841 G A TRRAP Missense_Mutation p.M3432I 0.14 benign(0.082) TCGA-CN-6013-01 7 99219092 99219092 G A ZSCAN25 Missense_Mutation p.E162K 0.13 tolerated(0.17) probably_damaging(0.98) TCGA-CN-6013-01 7 99305456 99305456 G A CYP3A7 Silent p.F465F 0.11 TCGA-CN-6013-01 8 113326672 113326672 A C CSMD3 Missense_Mutation p.L2512R 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-CN-6013-01 8 117868438 117868438 C T RAD21 Missense_Mutation p.E302K 0.10 tolerated(0.11) probably_damaging(0.94) TCGA-CN-6013-01 8 141900645 141900645 G C PTK2 Silent p.V64V 0.14 TCGA-CN-6013-01 8 55537230 55537230 T A RP1 Missense_Mutation p.I263K 0.27 deleterious(0) benign(0.044) TCGA-CN-6013-01 8 68992764 68992764 C T PREX2 Nonsense_Mutation p.R577* 0.05 TCGA-CN-6013-01 8 73849010 73849010 G A KCNB2 Missense_Mutation p.E474K 0.14 tolerated(0.14) benign(0.297) TCGA-CN-6013-01 9 100459507 100459507 G A XPA Missense_Mutation p.S23L 0.15 tolerated(0.06) benign(0.32) TCGA-CN-6013-01 9 104170889 104170889 G A ZNF189 Missense_Mutation p.R280K 0.10 tolerated(0.36) possibly_damaging(0.623) TCGA-CN-6013-01 9 116260302 116260302 C A RGS3 Intron 0.41 TCGA-CN-6013-01 9 131019928 131019928 C T GOLGA2 Silent p.E863E 0.20 TCGA-CN-6013-01 9 135163631 135163631 C T SETX Missense_Mutation p.E2106K 0.30 tolerated(0.3) possibly_damaging(0.524) TCGA-CN-6013-01 9 19435048 19435048 C T ACER2 Missense_Mutation p.P157S 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6013-01 9 21971096 21971096 C A CDKN2A Nonsense_Mutation p.E88* 0.59 TCGA-CN-6013-01 9 35558285 35558285 G A RUSC2 Missense_Mutation p.G1051E 0.12 deleterious(0.01) probably_damaging(1) TCGA-CN-6013-01 9 37512661 37512661 G C FBXO10 Silent p.L918L 0.24 TCGA-CN-6013-01 9 38016078 38016078 G C SHB Silent p.L256L 0.06 TCGA-CN-6013-01 9 74481894 74481894 G A ABHD17B Missense_Mutation p.P226S 0.18 deleterious(0) probably_damaging(0.988) TCGA-CN-6013-01 9 91150602 91150602 G A NXNL2 Missense_Mutation p.E85K 0.07 tolerated(0.06) benign(0.116) TCGA-CN-6013-01 X 107834353 107834353 G A COL4A5 Missense_Mutation p.E411K 0.32 unknown(0) TCGA-CN-6013-01 X 123775674 123775674 C T TENM1 Missense_Mutation p.D682N 0.22 tolerated(0.07) benign(0.04) TCGA-CN-6013-01 X 123775763 123775763 C A TENM1 Missense_Mutation p.G652V 0.23 deleterious(0) probably_damaging(0.993) TCGA-CN-6013-01 X 136652134 136652134 A C ZIC3 Missense_Mutation p.N437H 0.22 tolerated(0.08) benign(0.28) TCGA-CN-6013-01 X 153944337 153944337 G T GAB3 Missense_Mutation p.Q114K 0.67 deleterious(0.01) benign(0.349) TCGA-CN-6013-01 X 23412249 23412249 G A PTCHD1 Missense_Mutation p.E872K 0.57 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-CN-6013-01 X 51239203 51239203 C T NUDT11 Missense_Mutation p.E32K 0.38 deleterious(0.04) benign(0.121) TCGA-CN-6013-01 X 91873419 91873419 C T PCDH11X Missense_Mutation p.P1175L 0.27 tolerated_low_confidence(0.14) benign(0.31) TCGA-CN-6016-01 10 119049706 119049706 C T PDZD8 Missense_Mutation p.A418T 0.20 tolerated(0.1) probably_damaging(1) TCGA-CN-6016-01 10 121156241 121156241 G A GRK5 Missense_Mutation p.G99E 0.14 tolerated(0.59) benign(0.446) TCGA-CN-6016-01 10 55700733 55700733 G C PCDH15 Missense_Mutation p.P1042R 0.19 tolerated(0.3) possibly_damaging(0.851) TCGA-CN-6016-01 10 5804550 5804550 T C FAM208B Silent p.D2410D 0.11 TCGA-CN-6016-01 10 71166838 71166838 A G TACR2 Splice_Site p.X313_splice 0.13 TCGA-CN-6016-01 10 86014100 86014100 C G RGR Silent p.L181L 0.09 TCGA-CN-6016-01 11 113639609 113639609 C T ZW10 Silent p.Q62Q 0.10 TCGA-CN-6016-01 11 117109781 117109781 A T RNF214 Missense_Mutation p.D191V 0.14 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-CN-6016-01 11 1268491 1268491 C A MUC5B Missense_Mutation p.P3461T 0.05 unknown(0) TCGA-CN-6016-01 11 209868 209868 G A RIC8A Silent p.L198L 0.20 TCGA-CN-6016-01 11 33620472 33620472 G C KIAA1549L Missense_Mutation p.E1323Q 0.18 deleterious(0.04) possibly_damaging(0.903) TCGA-CN-6016-01 11 46702656 46702656 G T ARHGAP1 Missense_Mutation p.F180L 0.09 tolerated(0.65) benign(0.003) TCGA-CN-6016-01 11 46771969 46771969 T C CKAP5 Silent p.L1853L 0.23 TCGA-CN-6016-01 11 47305742 47305742 A G MADD Missense_Mutation p.M626V 0.13 tolerated(0.41) benign(0) TCGA-CN-6016-01 11 63681511 63681511 C T RCOR2 Missense_Mutation p.G269D 0.13 tolerated(1) benign(0.002) TCGA-CN-6016-01 11 75826972 75826972 G A UVRAG Missense_Mutation p.R437K 0.16 deleterious(0.03) possibly_damaging(0.458) TCGA-CN-6016-01 11 773582 773582 T C PDDC1 Missense_Mutation p.T99A 0.12 tolerated(0.53) benign(0.001) TCGA-CN-6016-01 11 89223667 89223667 T C NOX4 Missense_Mutation p.N38D 0.18 tolerated(0.17) benign(0.028) TCGA-CN-6016-01 11 93212375 93212375 G C SMCO4 5'UTR 0.07 TCGA-CN-6016-01 12 109536279 109536279 G C UNG Missense_Mutation p.G59R 0.16 tolerated(0.14) benign(0.002) TCGA-CN-6016-01 12 112610649 112610649 C T HECTD4 Missense_Mutation p.V3725I 0.10 benign(0.012) TCGA-CN-6016-01 12 112666473 112666473 C T HECTD4 Missense_Mutation p.R2075K 0.09 possibly_damaging(0.647) TCGA-CN-6016-01 12 27950650 27950650 C T KLHL42 Missense_Mutation p.R357W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-6016-01 12 53516967 53516967 C T SOAT2 Missense_Mutation p.P447S 0.18 deleterious(0) probably_damaging(1) TCGA-CN-6016-01 12 57920022 57920022 C - MBD6 Frame_Shift_Del p.H425Tfs*62 0.12 TCGA-CN-6016-01 12 6078430 6078430 G A VWF Missense_Mutation p.S2559L 0.07 tolerated(1) benign(0.001) TCGA-CN-6016-01 12 62785134 62785134 G C USP15 Missense_Mutation p.G720R 0.12 deleterious(0) possibly_damaging(0.893) TCGA-CN-6016-01 12 8687355 8687355 G A CLEC4E Missense_Mutation p.A180V 0.23 tolerated(1) benign(0.039) TCGA-CN-6016-01 13 113773175 113773175 G A F7 Silent p.L418L 0.31 TCGA-CN-6016-01 13 36700050 36700050 G A DCLK1 Silent p.A75A 0.17 TCGA-CN-6016-01 14 102452228 102452228 A T DYNC1H1 Missense_Mutation p.R556W 0.24 probably_damaging(0.999) TCGA-CN-6016-01 14 23397351 23397351 C T PRMT5 Missense_Mutation p.R100H 0.10 deleterious(0) probably_damaging(0.982) TCGA-CN-6016-01 14 51192739 51192739 C T NIN Missense_Mutation p.E2042K 0.14 deleterious(0) probably_damaging(0.996) TCGA-CN-6016-01 14 52520909 52520909 A G NID2 Missense_Mutation p.F300L 0.25 tolerated(0.62) benign(0.001) TCGA-CN-6016-01 15 101821964 101821964 C T SNRPA1 Missense_Mutation p.E245K 0.23 tolerated(0.27) benign(0.156) TCGA-CN-6016-01 15 69238891 69238891 T C SPESP1 Missense_Mutation p.S340P 0.20 tolerated(0.07) possibly_damaging(0.696) TCGA-CN-6016-01 15 81046631 81046631 G A ABHD17C Missense_Mutation p.G304R 0.07 deleterious(0) possibly_damaging(0.707) TCGA-CN-6016-01 16 17221565 17221565 G A XYLT1 Silent p.I727I 0.16 TCGA-CN-6016-01 16 18840717 18840717 G C SMG1 Missense_Mutation p.S3165C 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-CN-6016-01 16 2052728 2052728 G A ZNF598 Silent p.F157F 0.23 TCGA-CN-6016-01 16 28549476 28549476 C T NUPR1 Missense_Mutation p.G56E 0.14 tolerated(0.17) benign(0.026) TCGA-CN-6016-01 16 51175973 51175973 C T SALL1 Missense_Mutation p.E54K 0.13 tolerated(1) benign(0.261) TCGA-CN-6016-01 16 52473112 52473112 G A TOX3 3'UTR 0.11 TCGA-CN-6016-01 16 67241497 67241497 C T LRRC29 Intron 0.19 TCGA-CN-6016-01 16 69148735 69148735 C G HAS3 Missense_Mutation p.L410V 0.05 tolerated(0.27) benign(0.077) TCGA-CN-6016-01 16 71674673 71674673 C T MARVELD3 Silent p.L326L 0.07 TCGA-CN-6016-01 16 75513583 75513583 C T CHST6 Silent p.S48S 0.12 TCGA-CN-6016-01 17 27042864 27042864 C A RAB34 Nonsense_Mutation p.E147* 0.22 TCGA-CN-6016-01 17 3195220 3195220 G C OR3A1 Missense_Mutation p.I219M 0.30 deleterious(0) benign(0.039) TCGA-CN-6016-01 17 3417907 3417907 G A TRPV3 Missense_Mutation p.P753L 0.22 deleterious(0) probably_damaging(1) TCGA-CN-6016-01 17 36483161 36483161 G A GPR179 Silent p.S2097S 0.13 TCGA-CN-6016-01 17 59469549 59469549 G A BCAS3 3'UTR 0.16 TCGA-CN-6016-01 17 61621726 61621726 C T KCNH6 Silent p.L820L 0.34 TCGA-CN-6016-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.11 deleterious(0) probably_damaging(1) TCGA-CN-6016-01 18 65179743 65179743 T C DSEL Silent p.G711G 0.19 TCGA-CN-6016-01 19 10396010 10396010 G A ICAM1 3'UTR 0.24 TCGA-CN-6016-01 19 11917375 11917375 C G ZNF491 Missense_Mutation p.R203G 0.52 deleterious(0.02) benign(0.128) TCGA-CN-6016-01 19 33587186 33587186 C T GPATCH1 Missense_Mutation p.P229L 0.13 tolerated(0.06) benign(0.062) TCGA-CN-6016-01 19 40420125 40420125 C G FCGBP Missense_Mutation p.D957H 0.14 probably_damaging(0.997) TCGA-CN-6016-01 19 44001219 44001219 G C PHLDB3 Intron 0.14 TCGA-CN-6016-01 19 46319207 46319207 C T SYMPK Missense_Mutation p.E1197K 0.14 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-CN-6016-01 19 46509871 46509871 C T CCDC61 Missense_Mutation p.R96W 0.23 deleterious(0) probably_damaging(0.998) TCGA-CN-6016-01 19 52785416 52785416 A T ZNF766 Missense_Mutation p.K24I 0.17 deleterious(0) probably_damaging(0.969) TCGA-CN-6016-01 19 54653382 54653382 G C CNOT3 Silent p.V498V 0.17 TCGA-CN-6016-01 19 58146066 58146066 C G ZNF211 Missense_Mutation p.Q67E 0.12 deleterious(0) probably_damaging(0.979) TCGA-CN-6016-01 1 110199342 110199342 C T GSTM4 Silent p.H15H 0.14 TCGA-CN-6016-01 1 11980319 11980319 C G KIAA2013 3'UTR 0.17 TCGA-CN-6016-01 1 144814864 144814864 G A NBPF9 Missense_Mutation p.A167T 0.12 deleterious(0.04) benign(0.005) TCGA-CN-6016-01 1 145704173 145704173 C T CD160 Missense_Mutation p.D82N 0.14 tolerated(0.16) benign(0.023) TCGA-CN-6016-01 1 145704204 145704204 C G CD160 Missense_Mutation p.E71D 0.11 tolerated(0.07) benign(0.188) TCGA-CN-6016-01 1 151732587 151732587 T C MRPL9 Missense_Mutation p.Y248C 0.11 deleterious(0.01) probably_damaging(0.96) TCGA-CN-6016-01 1 154492809 154492809 C T TDRD10 Silent p.F57F 0.08 TCGA-CN-6016-01 1 156941486 156941486 C G ARHGEF11 Intron 0.13 TCGA-CN-6016-01 1 161167904 161167904 A G ADAMTS4 Missense_Mutation p.S172P 0.12 tolerated(0.17) possibly_damaging(0.856) TCGA-CN-6016-01 1 176738784 176738784 G C PAPPA2 Missense_Mutation p.Q1455H 0.19 deleterious(0.01) benign(0.117) TCGA-CN-6016-01 1 200635068 200635068 G A DDX59 Silent p.F267F 0.11 TCGA-CN-6016-01 1 206243180 206243180 C T C1orf186 Missense_Mutation p.A28T 0.18 tolerated(0.12) benign(0.071) TCGA-CN-6016-01 1 208205080 208205080 C T PLXNA2 Missense_Mutation p.D1694N 0.18 deleterious(0.01) benign(0.058) TCGA-CN-6016-01 1 215901489 215901489 C T USH2A Silent p.L3983L 0.13 TCGA-CN-6016-01 1 235345577 235345577 C G ARID4B Missense_Mutation p.R886T 0.18 tolerated_low_confidence(0.29) probably_damaging(0.989) TCGA-CN-6016-01 1 236722359 236722359 C T HEATR1 Missense_Mutation p.R1616H 0.19 deleterious(0) probably_damaging(0.995) TCGA-CN-6016-01 1 26527434 26527434 G A CATSPER4 Silent p.S367S 0.11 TCGA-CN-6016-01 1 68947189 68947189 C T DEPDC1 Missense_Mutation p.M623I 0.10 deleterious(0) probably_damaging(0.995) TCGA-CN-6016-01 1 78099026 78099026 C T ZZZ3 Missense_Mutation p.R5Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-CN-6016-01 1 93621908 93621908 C A TMED5 Missense_Mutation p.K140N 0.13 tolerated(0.18) possibly_damaging(0.532) TCGA-CN-6016-01 20 20036660 20036660 A G CRNKL1 5'UTR 0.15 TCGA-CN-6016-01 20 21335499 21335499 C T XRN2 Missense_Mutation p.T670I 0.11 deleterious(0) probably_damaging(0.994) TCGA-CN-6016-01 20 7866452 7866452 G A HAO1 Silent p.D291D 0.11 TCGA-CN-6016-01 21 45746680 45746680 G A PFKL Missense_Mutation p.A760T 0.25 tolerated(0.63) benign(0.003) TCGA-CN-6016-01 22 17072823 17072823 G A CCT8L2 Silent p.C206C 0.04 TCGA-CN-6016-01 22 22385794 22385794 C T IGLV4-69 Missense_Mutation p.R95C 0.13 tolerated(0.18) benign(0.075) TCGA-CN-6016-01 22 38465066 38465066 G A PICK1 Missense_Mutation p.V126M 0.32 deleterious(0) probably_damaging(0.979) TCGA-CN-6016-01 22 42422963 42422963 A T WBP2NL Silent p.L236L 0.22 TCGA-CN-6016-01 22 42422973 42422973 G A WBP2NL Missense_Mutation p.A240T 0.14 tolerated(0.49) possibly_damaging(0.787) TCGA-CN-6016-01 2 120833323 120833323 C G EPB41L5 Missense_Mutation p.L167V 0.16 deleterious(0.02) benign(0.248) TCGA-CN-6016-01 2 130832564 130832564 G A POTEF Silent p.F827F 0.21 TCGA-CN-6016-01 2 152483523 152483523 A G NEB Missense_Mutation p.M3447T 0.19 possibly_damaging(0.872) TCGA-CN-6016-01 2 178080540 178080540 T C HNRNPA3 Silent p.V86V 0.14 TCGA-CN-6016-01 2 179251794 179251794 G A OSBPL6 Missense_Mutation p.R720K 0.14 tolerated(0.18) possibly_damaging(0.907) TCGA-CN-6016-01 2 179641976 179641976 G A TTN Nonsense_Mutation p.R1572* 0.21 TCGA-CN-6016-01 2 201791527 201791527 G T ORC2 Silent p.V338V 0.10 TCGA-CN-6016-01 2 233684583 233684583 G A GIGYF2 Missense_Mutation p.R827Q 0.19 unknown(0) TCGA-CN-6016-01 2 29375604 29375604 A G CLIP4 Missense_Mutation p.I359V 0.08 tolerated(0.93) benign(0) TCGA-CN-6016-01 2 71828648 71828648 C T DYSF Missense_Mutation p.P1306L 0.14 deleterious(0.02) benign(0.054) TCGA-CN-6016-01 2 97007517 97007517 G A NCAPH Missense_Mutation p.E53K 0.16 tolerated(0.4) benign(0.024) TCGA-CN-6016-01 3 10157479 10157479 A G BRK1 Missense_Mutation p.I32V 0.18 tolerated(0.11) benign(0.019) TCGA-CN-6016-01 3 124810400 124810400 C A SLC12A8 Missense_Mutation p.A602S 0.27 deleterious(0.03) possibly_damaging(0.881) TCGA-CN-6016-01 3 150690536 150690536 G C CLRN1 5'Flank 0.17 TCGA-CN-6016-01 3 157031448 157031448 C G VEPH1 Missense_Mutation p.E658Q 0.20 tolerated(0.24) possibly_damaging(0.797) TCGA-CN-6016-01 3 164764678 164764678 T A SI Missense_Mutation p.E613V 0.23 deleterious(0.04) benign(0.178) TCGA-CN-6016-01 3 183368442 183368442 A G KLHL24 Missense_Mutation p.R100G 0.30 deleterious(0.01) benign(0.324) TCGA-CN-6016-01 3 186917476 186917476 C T RTP1 Missense_Mutation p.T137M 0.16 tolerated(0.09) benign(0.104) TCGA-CN-6016-01 3 25611301 25611301 C T RARB Silent p.C167C 0.11 TCGA-CN-6016-01 3 42242386 42242386 A G TRAK1 Missense_Mutation p.M423V 0.16 deleterious(0.02) benign(0.42) TCGA-CN-6016-01 3 44852484 44852484 G A KIF15 Silent p.E706E 0.14 TCGA-CN-6016-01 4 121732584 121732584 T C PRDM5 Missense_Mutation p.I296V 0.12 tolerated(0.51) benign(0.002) TCGA-CN-6016-01 4 138450946 138450946 T C PCDH18 Missense_Mutation p.N766S 0.17 tolerated(0.1) possibly_damaging(0.474) TCGA-CN-6016-01 4 187557335 187557336 - A FAT1 Frame_Shift_Ins p.I1343Yfs*2 0.09 TCGA-CN-6016-01 4 39449964 39449964 C G KLB Missense_Mutation p.F931L 0.14 deleterious(0.01) probably_damaging(0.91) TCGA-CN-6016-01 4 72316995 72316995 T C SLC4A4 Silent p.C433C 0.18 TCGA-CN-6016-01 4 89660214 89660214 C G FAM13A Missense_Mutation p.Q843H 0.19 deleterious(0) probably_damaging(0.998) TCGA-CN-6016-01 4 96256763 96256763 T C UNC5C Silent p.E48E 0.17 TCGA-CN-6016-01 5 115141044 115141044 C G CDO1 3'UTR 0.14 TCGA-CN-6016-01 5 140431659 140431659 C T PCDHB1 Nonsense_Mutation p.R202* 0.12 TCGA-CN-6016-01 5 170738466 170738466 G A TLX3 Missense_Mutation p.A247T 0.25 deleterious(0.01) benign(0.161) TCGA-CN-6016-01 5 32712139 32712139 A G NPR3 Missense_Mutation p.N86S 0.08 tolerated(0.16) benign(0.038) TCGA-CN-6016-01 5 54329703 54329703 G C GZMK Missense_Mutation p.K248N 0.09 tolerated(0.15) benign(0.287) TCGA-CN-6016-01 6 119295660 119295660 T C FAM184A Missense_Mutation p.I950V 0.24 tolerated(0.76) benign(0.001) TCGA-CN-6016-01 6 154831199 154831199 C G CNKSR3 Missense_Mutation p.R17T 0.14 tolerated(0.07) benign(0.03) TCGA-CN-6016-01 6 166944753 166944753 C T RPS6KA2 Missense_Mutation p.A97T 0.17 deleterious(0) probably_damaging(0.959) TCGA-CN-6016-01 6 24658077 24658077 G A TDP2 Silent p.Y160Y 0.16 TCGA-CN-6016-01 6 30624814 30624814 T A DHX16 Missense_Mutation p.Y688F 0.16 tolerated(0.15) unknown(0) TCGA-CN-6016-01 6 32974494 32974494 G T HLA-DOA 3'UTR 0.15 TCGA-CN-6016-01 6 33261350 33261350 G A RGL2 Intron 0.12 TCGA-CN-6016-01 6 33636358 33636358 C G ITPR3 Silent p.L651L 0.24 TCGA-CN-6016-01 6 42222641 42222641 C T TRERF1 Silent p.L868L 0.27 TCGA-CN-6016-01 6 42986153 42986153 C T KLHDC3 Missense_Mutation p.R198C 0.37 deleterious(0) probably_damaging(1) TCGA-CN-6016-01 6 52141938 52141938 T A MCM3 Silent p.R409R 0.17 TCGA-CN-6016-01 6 70639472 70639472 C T COL19A1 Silent p.V182V 0.13 TCGA-CN-6016-01 7 107696162 107696162 C A LAMB4 Missense_Mutation p.V1224L 0.21 tolerated(1) benign(0) TCGA-CN-6016-01 7 107696408 107696408 G A LAMB4 Missense_Mutation p.P1142S 0.17 tolerated(0.06) benign(0.257) TCGA-CN-6016-01 7 97498327 97498327 G C ASNS Missense_Mutation p.H48D 0.21 deleterious(0.01) probably_damaging(1) TCGA-CN-6016-01 8 144802878 144802878 G A MAPK15 Missense_Mutation p.R262Q 0.09 tolerated(0.26) benign(0.131) TCGA-CN-6016-01 8 145135305 145135305 C T EXOSC4 Missense_Mutation p.A180V 0.09 tolerated(0.07) benign(0.045) TCGA-CN-6016-01 8 59059573 59059573 G T FAM110B Missense_Mutation p.D262Y 0.12 deleterious(0) probably_damaging(1) TCGA-CN-6016-01 9 104071519 104071519 A T LPPR1 Missense_Mutation p.T138S 0.12 tolerated(0.1) benign(0.191) TCGA-CN-6016-01 9 125289435 125289435 G A OR1N1 Silent p.A46A 0.12 TCGA-CN-6016-01 9 136226921 136226921 C T SURF2 Missense_Mutation p.R145C 0.20 benign(0.018) TCGA-CN-6016-01 9 139401405 139401405 C T NOTCH1 Missense_Mutation p.V1222M 0.22 tolerated(0.14) benign(0.054) TCGA-CN-6016-01 9 2086833 2086833 G A SMARCA2 Missense_Mutation p.R844Q 0.21 benign(0.001) TCGA-CN-6016-01 9 88925620 88925620 C T ZCCHC6 Splice_Site p.X1126_splice 0.16 TCGA-CN-6016-01 9 97080990 97080990 A T NUTM2F Silent p.L676L 0.25 TCGA-CN-6016-01 X 119760090 119760090 G A C1GALT1C1 Missense_Mutation p.P311L 0.32 deleterious(0) probably_damaging(0.993) TCGA-CN-6016-01 X 32613911 32613911 C G DMD Missense_Mutation p.G522A 0.18 probably_damaging(0.978) TCGA-CN-6016-01 X 73066414 73066414 G C XIST RNA 0.12 TCGA-CN-6017-01 2 183888621 183888621 T C NCKAP1 Silent p.K50K 0.05 TCGA-CN-6017-01 5 169122871 169122871 G A DOCK2 Missense_Mutation p.G303D 0.06 deleterious(0) probably_damaging(0.978) TCGA-CN-6017-01 6 29365004 29365004 C G OR12D2 Silent p.L176L 0.04 TCGA-CN-6017-01 7 82580167 82580167 C T PCLO Missense_Mutation p.R3246Q 0.07 unknown(0) TCGA-CN-6018-01 10 79555860 79555860 C T DLG5 Missense_Mutation p.D1799N 0.26 deleterious(0) probably_damaging(0.999) TCGA-CN-6018-01 10 95191243 95191243 C A MYOF Missense_Mutation p.K89N 0.28 deleterious(0.01) possibly_damaging(0.677) TCGA-CN-6018-01 11 108172372 108172372 C T ATM Intron 0.18 TCGA-CN-6018-01 11 108385200 108385200 G A EXPH5 Missense_Mutation p.P345L 0.04 tolerated(0.08) benign(0.121) TCGA-CN-6018-01 11 117335712 117335712 G A DSCAML1 Missense_Mutation p.R1131W 0.22 deleterious(0) probably_damaging(0.991) TCGA-CN-6018-01 11 119029006 119029006 C G ABCG4 Silent p.L377L 0.11 TCGA-CN-6018-01 11 122850040 122850040 C T BSX Missense_Mutation p.E130K 0.09 tolerated(0.09) possibly_damaging(0.59) TCGA-CN-6018-01 11 126126666 126126666 A G FAM118B Missense_Mutation p.I301V 0.24 tolerated(1) possibly_damaging(0.615) TCGA-CN-6018-01 11 3380843 3380843 G T ZNF195 Silent p.P465P 0.24 TCGA-CN-6018-01 11 62556844 62556844 G A TMEM179B Missense_Mutation p.R122Q 0.14 tolerated(0.1) benign(0.242) TCGA-CN-6018-01 11 65315474 65315474 C T LTBP3 Missense_Mutation p.G588E 0.19 deleterious(0) probably_damaging(1) TCGA-CN-6018-01 11 76969569 76969569 G A GDPD4 Silent p.F242F 0.22 TCGA-CN-6018-01 11 83770508 83770508 G A DLG2 Missense_Mutation p.R257W 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CN-6018-01 12 108634156 108634156 C T WSCD2 Missense_Mutation p.R394W 0.08 deleterious(0) benign(0.04) TCGA-CN-6018-01 12 109972413 109972413 G T UBE3B Silent p.L1011L 0.21 TCGA-CN-6018-01 12 109972414 109972414 G T UBE3B Missense_Mutation p.G1012C 0.21 deleterious(0) probably_damaging(0.998) TCGA-CN-6018-01 12 133202825 133202825 C T POLE Missense_Mutation p.E2137K 0.14 deleterious(0.01) probably_damaging(0.941) TCGA-CN-6018-01 12 56718209 56718209 G A PAN2 Silent p.D599D 0.09 TCGA-CN-6018-01 12 83359465 83359465 C G TMTC2 Missense_Mutation p.S604C 0.05 deleterious(0) probably_damaging(0.984) TCGA-CN-6018-01 12 970337 970337 A G WNK1 Silent p.V593V 0.22 TCGA-CN-6018-01 13 23906534 23906534 C T SACS Silent p.K3827K 0.20 TCGA-CN-6018-01 13 33703846 33703846 A T STARD13 Missense_Mutation p.L323H 0.10 tolerated(0.54) possibly_damaging(0.614) TCGA-CN-6018-01 13 92345977 92345977 C A GPC5 Missense_Mutation p.L288I 0.10 tolerated(1) benign(0.1) TCGA-CN-6018-01 14 107013048 107013048 C T IGHV3-49 Missense_Mutation p.A83T 0.20 tolerated_low_confidence(0.06) benign(0.024) TCGA-CN-6018-01 14 24608079 24608079 C T PSME1 3'UTR 0.18 TCGA-CN-6018-01 14 42356945 42356945 C T LRFN5 Missense_Mutation p.H373Y 0.15 tolerated(1) benign(0.002) TCGA-CN-6018-01 14 51132173 51132173 T - SAV1 Frame_Shift_Del p.R87Efs*17 0.28 TCGA-CN-6018-01 14 79933658 79933658 C T NRXN3 Silent p.A746A 0.21 TCGA-CN-6018-01 15 38805096 38805096 C T RASGRP1 Missense_Mutation p.R246Q 0.14 deleterious(0) probably_damaging(0.99) TCGA-CN-6018-01 15 43552685 43552685 G A TGM5 Missense_Mutation p.R35W 0.11 deleterious(0) probably_damaging(1) TCGA-CN-6018-01 15 43910064 43910064 G A STRC Silent p.G185G 0.10 TCGA-CN-6018-01 15 79749234 79749234 G T KIAA1024 Missense_Mutation p.V249L 0.07 tolerated(0.72) benign(0.002) TCGA-CN-6018-01 15 80845025 80845025 G A ARNT2 Silent p.V333V 0.09 TCGA-CN-6018-01 15 81181835 81181835 G A KIAA1199 Missense_Mutation p.D330N 0.08 tolerated(0.28) benign(0.008) TCGA-CN-6018-01 16 56875619 56875619 C A NUP93 Silent p.I741I 0.12 TCGA-CN-6018-01 16 57509069 57509069 C T DOK4 Missense_Mutation p.D118N 0.18 tolerated(0.08) benign(0.038) TCGA-CN-6018-01 17 11895781 11895781 G T ZNF18 Missense_Mutation p.D122E 0.10 tolerated(0.63) benign(0.143) TCGA-CN-6018-01 17 20799105 20799105 G A CCDC144NL Missense_Mutation p.R77C 0.16 tolerated_low_confidence(0.2) benign(0.006) TCGA-CN-6018-01 17 21319815 21319815 C T KCNJ12 Silent p.D387D 0.06 TCGA-CN-6018-01 17 36091644 36091644 C T HNF1B Silent p.L329L 0.16 TCGA-CN-6018-01 17 47284018 47284018 C T GNGT2 3'UTR 0.37 TCGA-CN-6018-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.24 deleterious(0) probably_damaging(1) TCGA-CN-6018-01 17 79226463 79226463 C T SLC38A10 Missense_Mutation p.E493K 0.25 deleterious(0) possibly_damaging(0.777) TCGA-CN-6018-01 19 10571734 10571734 G A PDE4A Missense_Mutation p.D474N 0.21 deleterious(0) probably_damaging(0.999) TCGA-CN-6018-01 19 22939423 22939423 G T ZNF99 3'Flank 0.18 TCGA-CN-6018-01 19 39329085 39329086 - A HNRNPL Frame_Shift_Ins p.H504Afs*16 0.20 TCGA-CN-6018-01 19 44223209 44223209 C T IRGC Missense_Mutation p.R167C 0.08 deleterious(0) benign(0.293) TCGA-CN-6018-01 19 45719439 45719439 G A EXOC3L2 Missense_Mutation p.S278L 0.12 tolerated(0.06) benign(0.016) TCGA-CN-6018-01 19 49143424 49143424 C G CA11 Silent p.L133L 0.24 TCGA-CN-6018-01 19 52536875 52536875 C T ZNF432 3'UTR 0.13 TCGA-CN-6018-01 19 53669070 53669070 G A ZNF665 Nonsense_Mutation p.Q225* 0.09 TCGA-CN-6018-01 19 57286846 57286846 A C ZIM2 Missense_Mutation p.L265R 0.23 tolerated(0.21) possibly_damaging(0.643) TCGA-CN-6018-01 19 58213789 58213789 G C ZNF154 Silent p.L176L 0.15 TCGA-CN-6018-01 19 58850557 58850557 G C ZSCAN22 Missense_Mutation p.Q447H 0.11 tolerated(0.08) benign(0.028) TCGA-CN-6018-01 1 10477152 10477152 C G PGD Nonsense_Mutation p.S318* 0.17 TCGA-CN-6018-01 1 120466368 120466368 T - NOTCH2 Frame_Shift_Del p.Q1584Rfs*17 0.18 TCGA-CN-6018-01 1 151735515 151735515 C T MRPL9 Silent p.K87K 0.40 TCGA-CN-6018-01 1 160061631 160061631 C A IGSF8 Missense_Mutation p.K608N 0.05 tolerated(0.1) possibly_damaging(0.522) TCGA-CN-6018-01 1 161179925 161179925 G C NDUFS2 Missense_Mutation p.D243H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CN-6018-01 1 247201259 247201259 C G ZNF670 Missense_Mutation p.G221A 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-CN-6018-01 1 39340697 39340697 A C GJA9 Missense_Mutation p.F358L 0.15 tolerated(0.45) benign(0.093) TCGA-CN-6018-01 1 40034595 40034595 T C PABPC4 Missense_Mutation p.N252S 0.17 deleterious(0.01) possibly_damaging(0.902) TCGA-CN-6018-01 1 92495738 92495738 C T EPHX4 Silent p.I34I 0.50 TCGA-CN-6018-01 20 17417394 17417394 G A PCSK2 Missense_Mutation p.E251K 0.10 deleterious(0) probably_damaging(1) TCGA-CN-6018-01 20 43932984 43932984 G A MATN4 Missense_Mutation p.A176V 0.16 possibly_damaging(0.881) TCGA-CN-6018-01 20 56087700 56087700 T C CTCFL Missense_Mutation p.H480R 0.13 deleterious(0) probably_damaging(1) TCGA-CN-6018-01 20 57766526 57766526 G A ZNF831 Missense_Mutation p.R151H 0.21 deleterious(0) probably_damaging(0.998) TCGA-CN-6018-01 20 9561425 9561425 G A PAK7 Silent p.H119H 0.12 TCGA-CN-6018-01 21 37652617 37652617 G A DOPEY2 Missense_Mutation p.E2002K 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6018-01 21 44474014 44474014 G A CBS Silent p.A544A 0.13 TCGA-CN-6018-01 22 23465286 23465286 G A GNAZ Missense_Mutation p.E246K 0.23 deleterious(0) possibly_damaging(0.646) TCGA-CN-6018-01 22 37770765 37770765 G A ELFN2 Silent p.D270D 0.16 TCGA-CN-6018-01 22 42999092 42999092 G A POLDIP3 Missense_Mutation p.T45I 0.06 tolerated(0.07) benign(0.005) TCGA-CN-6018-01 22 50181097 50181097 C T BRD1 Missense_Mutation p.R802Q 0.17 tolerated(0.11) possibly_damaging(0.744) TCGA-CN-6018-01 22 50967607 50967607 G A TYMP Silent p.V125V 0.08 TCGA-CN-6018-01 2 100919411 100919411 C T LONRF2 Missense_Mutation p.C298Y 0.28 tolerated(1) benign(0.438) TCGA-CN-6018-01 2 116485494 116485494 G C DPP10 Missense_Mutation p.A231P 0.10 tolerated(0.16) benign(0.003) TCGA-CN-6018-01 2 186672082 186672082 A T FSIP2 Missense_Mutation p.I6106F 0.13 probably_damaging(0.972) TCGA-CN-6018-01 2 232323778 232323778 T C NCL Missense_Mutation p.T367A 0.40 benign(0.039) TCGA-CN-6018-01 2 238671551 238671551 G A LRRFIP1 Missense_Mutation p.D399N 0.09 tolerated(0.19) benign(0.009) TCGA-CN-6018-01 2 239141090 239141090 C T AC016757.3 5'Flank 0.33 TCGA-CN-6018-01 2 47250544 47250544 C A TTC7A Intron 0.11 TCGA-CN-6018-01 2 60688817 60688817 G A BCL11A Silent p.C410C 0.16 TCGA-CN-6018-01 2 95846873 95846873 C T ZNF2 Silent p.H100H 0.16 TCGA-CN-6018-01 2 97543720 97543720 C A FAM178B Missense_Mutation p.E638D 0.11 deleterious(0) probably_damaging(0.999) TCGA-CN-6018-01 3 164767620 164767620 C T SI Missense_Mutation p.G519E 0.14 tolerated(0.05) benign(0.061) TCGA-CN-6018-01 3 169557902 169557902 C G LRRC31 Silent p.V509V 0.12 TCGA-CN-6018-01 3 172607247 172607247 C G SPATA16 3'UTR 0.05 TCGA-CN-6018-01 3 184074822 184074822 C T CLCN2 Silent p.V348V 0.18 TCGA-CN-6018-01 3 196735818 196735818 T C MFI2 Missense_Mutation p.N515S 0.39 tolerated(1) benign(0.006) TCGA-CN-6018-01 3 45052755 45052755 A T EXOSC7 Missense_Mutation p.H267L 0.21 deleterious(0) benign(0.02) TCGA-CN-6018-01 3 49215451 49215451 C T C3orf84 Missense_Mutation p.R78Q 0.19 tolerated(0.11) benign(0.04) TCGA-CN-6018-01 3 6903381 6903381 C T GRM7 Silent p.G102G 0.21 TCGA-CN-6018-01 4 100237412 100237413 CT - ADH1B Frame_Shift_Del p.R102Sfs*3 0.13 TCGA-CN-6018-01 4 126239489 126239489 G A FAT4 Silent p.L641L 0.21 TCGA-CN-6018-01 4 187630504 187630504 C A FAT1 Nonsense_Mutation p.E160* 0.14 TCGA-CN-6018-01 4 4301683 4301683 T C ZBTB49 Missense_Mutation p.V4A 0.13 tolerated(0.17) benign(0.027) TCGA-CN-6018-01 4 69795796 69795796 G T UGT2A3 Missense_Mutation p.A440D 0.14 deleterious(0) probably_damaging(0.934) TCGA-CN-6018-01 4 77818042 77818042 C T SOWAHB Missense_Mutation p.D321N 0.23 tolerated(0.44) possibly_damaging(0.539) TCGA-CN-6018-01 4 80328687 80328687 A G GK2 Missense_Mutation p.F223S 0.19 deleterious(0) probably_damaging(0.997) TCGA-CN-6018-01 4 90170269 90170270 - CTG GPRIN3 In_Frame_Ins p.S330dup 0.15 TCGA-CN-6018-01 4 96762253 96762253 C G PDHA2 Missense_Mutation p.L318V 0.19 deleterious(0.01) benign(0.25) TCGA-CN-6018-01 4 99982433 99982433 G C METAP1 Missense_Mutation p.D376H 0.10 deleterious(0.03) benign(0.291) TCGA-CN-6018-01 5 149512334 149512334 G A PDGFRB Missense_Mutation p.T369M 0.16 tolerated(0.23) benign(0.066) TCGA-CN-6018-01 5 159992867 159992867 G C ATP10B Missense_Mutation p.L1327V 0.12 tolerated(0.28) benign(0.342) TCGA-CN-6018-01 5 170336684 170336684 C T RANBP17 Missense_Mutation p.S170L 0.10 tolerated(1) benign(0.229) TCGA-CN-6018-01 5 31553033 31553033 G T C5orf22 3'UTR 0.36 TCGA-CN-6018-01 5 74801835 74801835 G A COL4A3BP Missense_Mutation p.S196F 0.08 deleterious(0) possibly_damaging(0.894) TCGA-CN-6018-01 5 82834287 82834287 C T VCAN Missense_Mutation p.T1822I 0.38 deleterious(0) benign(0.221) TCGA-CN-6018-01 6 110501792 110501793 TC - CDC40 Frame_Shift_Del p.L50Sfs*13 0.19 TCGA-CN-6018-01 6 135769486 135769486 C G AHI1 Missense_Mutation p.R523T 0.17 deleterious(0) possibly_damaging(0.889) TCGA-CN-6018-01 6 27835120 27835130 GCCAAAGAAAG - HIST1H1B Frame_Shift_Del p.L60Sfs*3 0.09 TCGA-CN-6018-01 6 29080240 29080240 G A OR2J3 Silent p.S191S 0.28 TCGA-CN-6018-01 6 37140900 37140900 G A PIM1 Missense_Mutation p.E246K 0.15 tolerated(0.06) benign(0.118) TCGA-CN-6018-01 6 39158899 39158899 C T KCNK5 Missense_Mutation p.V423M 0.42 tolerated_low_confidence(0.07) benign(0.054) TCGA-CN-6018-01 6 90368044 90368044 C G MDN1 Missense_Mutation p.E5023Q 0.22 unknown(0) TCGA-CN-6018-01 7 100345764 100345764 C T ZAN Missense_Mutation p.A343V 0.12 benign(0.137) TCGA-CN-6018-01 7 129663445 129663445 C T ZC3HC1 Missense_Mutation p.R380Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-CN-6018-01 7 139661761 139661761 C T TBXAS1 Missense_Mutation p.S335F 0.24 deleterious(0) possibly_damaging(0.786) TCGA-CN-6018-01 7 2317747 2317747 C T SNX8 Silent p.E96E 0.05 TCGA-CN-6018-01 7 2687663 2687663 C T TTYH3 Missense_Mutation p.R233C 0.13 deleterious(0) probably_damaging(1) TCGA-CN-6018-01 8 143999037 143999037 C G CYP11B2 Missense_Mutation p.E74Q 0.17 tolerated(0.08) probably_damaging(1) TCGA-CN-6018-01 8 145235410 145235410 C T MROH1 Silent p.R182R 0.21 TCGA-CN-6018-01 8 35579850 35579850 G A UNC5D Missense_Mutation p.V414I 0.15 tolerated(0.77) possibly_damaging(0.467) TCGA-CN-6018-01 8 66631467 66631467 C T PDE7A 3'UTR 0.26 TCGA-CN-6018-01 8 85799988 85799988 G A RALYL Missense_Mutation p.D292N 0.14 tolerated(0.27) possibly_damaging(0.749) TCGA-CN-6018-01 9 107558478 107558478 C G ABCA1 Silent p.G1746G 0.48 TCGA-CN-6018-01 X 100538563 100538563 G A TAF7L Missense_Mutation p.R138C 0.36 deleterious(0.04) possibly_damaging(0.515) TCGA-CN-6018-01 X 117699986 117699986 C T DOCK11 Missense_Mutation p.H238Y 0.09 tolerated(0.54) benign(0.002) TCGA-CN-6018-01 X 122561966 122561966 C T GRIA3 Silent p.S684S 0.06 TCGA-CN-6018-01 X 124097537 124097537 A T TENM1 Silent p.A22A 0.11 TCGA-CN-6018-01 X 132091167 132091167 G A HS6ST2 Missense_Mutation p.P206S 0.25 tolerated_low_confidence(0.13) possibly_damaging(0.642) TCGA-CN-6018-01 X 151303808 151303808 C T MAGEA10 Silent p.S95S 0.05 TCGA-CN-6018-01 X 153207481 153207481 C T RENBP Missense_Mutation p.D231N 0.06 tolerated(0.29) benign(0.005) TCGA-CN-6018-01 X 153670046 153670046 G A GDI1 Missense_Mutation p.R299H 0.07 deleterious(0) probably_damaging(0.988) TCGA-CN-6018-01 X 24229594 24229594 T C ZFX 3'UTR 0.25 TCGA-CN-6018-01 X 47442865 47442865 G A TIMP1 Silent p.L17L 0.08 TCGA-CN-6018-01 X 64722774 64722774 G A ZC3H12B Silent p.P732P 0.33 TCGA-CN-6018-01 X 69510292 69510292 G A KIF4A 5'UTR 0.12 TCGA-CN-6018-01 X 77529009 77529009 G A CYSLTR1 Missense_Mutation p.R79C 0.11 deleterious(0) probably_damaging(1) TCGA-CN-6018-01 X 79698631 79698631 C A FAM46D Missense_Mutation p.S198Y 0.05 tolerated(0.1) benign(0.033) TCGA-CN-6019-01 10 101731794 101731794 C T DNMBP Missense_Mutation p.E30K 0.24 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 10 50724315 50724315 G A ERCC6-PGBD3 Silent p.C750C 0.19 TCGA-CN-6019-01 11 111156591 111156591 G A C11orf53 Missense_Mutation p.G175R 0.18 tolerated(0.18) probably_damaging(0.984) TCGA-CN-6019-01 11 114393075 114393075 G C NXPE1 Missense_Mutation p.P278R 0.20 deleterious(0) probably_damaging(0.936) TCGA-CN-6019-01 11 1263968 1263968 C T MUC5B Missense_Mutation p.A1953V 0.20 unknown(0) TCGA-CN-6019-01 11 56309937 56309937 G T OR5M11 Missense_Mutation p.T266N 0.11 deleterious(0.01) benign(0.021) TCGA-CN-6019-01 12 105434423 105434423 C - ALDH1L2 Frame_Shift_Del p.G638Afs*16 0.09 TCGA-CN-6019-01 12 116445306 116445306 A G MED13L Silent p.Y716Y 0.15 TCGA-CN-6019-01 12 120634606 120634606 G A RPLP0 Silent p.D308D 0.14 TCGA-CN-6019-01 12 124341683 124341683 G T DNAH10 Missense_Mutation p.L2055F 0.10 probably_damaging(1) TCGA-CN-6019-01 12 50386143 50386143 T G RACGAP1 Missense_Mutation p.H488P 0.14 tolerated(0.1) benign(0.031) TCGA-CN-6019-01 12 5908715 5908715 C T ANO2 Missense_Mutation p.R334H 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-CN-6019-01 12 7527960 7527960 T A CD163L1 Missense_Mutation p.E973V 0.18 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 12 99065373 99065373 C T APAF1 Nonsense_Mutation p.R557* 0.08 TCGA-CN-6019-01 13 21562740 21562740 G A LATS2 Silent p.H393H 0.38 TCGA-CN-6019-01 13 52682493 52682493 G T NEK5 Missense_Mutation p.S172Y 0.30 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 14 21561411 21561411 C A ZNF219 Silent p.P15P 0.27 TCGA-CN-6019-01 14 29237527 29237527 A C FOXG1 Missense_Mutation p.N348H 0.13 deleterious(0.04) possibly_damaging(0.511) TCGA-CN-6019-01 14 32586346 32586346 C T ARHGAP5 Nonsense_Mutation p.Q1240* 0.19 TCGA-CN-6019-01 14 53345312 53345312 A G FERMT2 Silent p.F317F 0.24 TCGA-CN-6019-01 15 41819777 41819777 C T RPAP1 Nonsense_Mutation p.W485* 0.14 TCGA-CN-6019-01 15 44900683 44900683 T C SPG11 Missense_Mutation p.S1138G 0.17 tolerated(1) possibly_damaging(0.682) TCGA-CN-6019-01 15 51696913 51696913 T C GLDN Missense_Mutation p.Y540H 0.15 deleterious(0.05) possibly_damaging(0.838) TCGA-CN-6019-01 15 53889325 53889325 C - WDR72 Frame_Shift_Del p.W1033* 0.12 TCGA-CN-6019-01 15 79350798 79350798 C T RASGRF1 Missense_Mutation p.E137K 0.11 deleterious(0) probably_damaging(0.976) TCGA-CN-6019-01 16 10788235 10788235 T C TEKT5 Missense_Mutation p.N166D 0.16 deleterious(0.01) benign(0.027) TCGA-CN-6019-01 16 30036886 30036886 C A FAM57B Intron 0.17 TCGA-CN-6019-01 16 3065430 3065430 G A CLDN6 Missense_Mutation p.A198V 0.17 tolerated(0.45) probably_damaging(0.996) TCGA-CN-6019-01 16 31087784 31087784 C G ZNF646 Missense_Mutation p.P47A 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-CN-6019-01 16 31087829 31087829 A G ZNF646 Missense_Mutation p.S62G 0.17 deleterious(0) probably_damaging(0.98) TCGA-CN-6019-01 16 68112759 68112759 G A DUS2 Missense_Mutation p.R451Q 0.18 deleterious(0.02) possibly_damaging(0.899) TCGA-CN-6019-01 17 10432731 10432731 T A MYH2 Missense_Mutation p.E1062V 0.11 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 17 18708941 18708941 C T TVP23B 3'UTR 0.15 TCGA-CN-6019-01 17 29548868 29548868 G T NF1 Missense_Mutation p.A548S 0.08 deleterious(0) probably_damaging(0.97) TCGA-CN-6019-01 17 33288546 33288546 C T CCT6B 5'Flank 0.09 TCGA-CN-6019-01 17 40940808 40940808 C A WNK4 Missense_Mutation p.A717D 0.17 tolerated(0.16) unknown(0) TCGA-CN-6019-01 17 48602250 48602250 G T MYCBPAP Missense_Mutation p.A593S 0.17 tolerated(0.12) benign(0.058) TCGA-CN-6019-01 17 5009060 5009060 A G ZNF232 3'UTR 0.11 TCGA-CN-6019-01 17 5290432 5290432 T C NUP88 Splice_Site p.X639_splice 0.25 TCGA-CN-6019-01 17 67094145 67094145 C T ABCA6 Silent p.G1012G 0.17 TCGA-CN-6019-01 17 67111520 67111520 C A ABCA6 Nonsense_Mutation p.E535* 0.15 TCGA-CN-6019-01 17 7350422 7350422 C T CHRNB1 Silent p.S138S 0.18 TCGA-CN-6019-01 17 73956445 73956445 C T ACOX1 Missense_Mutation p.R94Q 0.19 tolerated(0.62) benign(0.009) TCGA-CN-6019-01 17 7574034 7574034 C A TP53 Splice_Site p.X332_splice 0.24 TCGA-CN-6019-01 17 76540009 76540009 C A DNAH17 Missense_Mutation p.R821I 0.14 benign(0.194) TCGA-CN-6019-01 17 78318661 78318661 C A RNF213 Missense_Mutation p.Q2176K 0.24 benign(0.342) TCGA-CN-6019-01 18 5419778 5419778 C T EPB41L3 Missense_Mutation p.E480K 0.16 deleterious(0.03) benign(0.206) TCGA-CN-6019-01 18 76873335 76873335 A G ATP9B Missense_Mutation p.Y180C 0.14 deleterious(0.05) probably_damaging(0.94) TCGA-CN-6019-01 19 11456289 11456289 C T TMEM205 Missense_Mutation p.E3K 0.08 tolerated(0.4) benign(0.007) TCGA-CN-6019-01 19 12297983 12297983 C T ZNF136 Silent p.L264L 0.32 TCGA-CN-6019-01 19 18966828 18966828 A G UPF1 Missense_Mutation p.K547E 0.19 deleterious(0) benign(0.221) TCGA-CN-6019-01 19 19338426 19338426 C T NCAN Missense_Mutation p.T666M 0.16 deleterious(0.05) benign(0.379) TCGA-CN-6019-01 19 23544891 23544891 T A ZNF91 Missense_Mutation p.E297V 0.16 tolerated(0.06) possibly_damaging(0.728) TCGA-CN-6019-01 19 24309534 24309534 C A ZNF254 Missense_Mutation p.N244K 0.15 deleterious(0) benign(0.005) TCGA-CN-6019-01 19 36051747 36051747 C T ATP4A Missense_Mutation p.A170T 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CN-6019-01 19 44222644 44222644 G A IRGC Splice_Site 0.24 TCGA-CN-6019-01 19 45262845 45262845 C A BCL3 Silent p.P446P 0.23 TCGA-CN-6019-01 19 51870353 51870353 C A CLDND2 3'UTR 0.14 TCGA-CN-6019-01 19 53611805 53611805 C A ZNF415 Missense_Mutation p.C498F 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-CN-6019-01 19 55106221 55106221 G A LILRA1 Silent p.E54E 0.14 TCGA-CN-6019-01 19 5691434 5691434 C A RPL36 Missense_Mutation p.D66E 0.14 deleterious(0.03) benign(0.211) TCGA-CN-6019-01 19 58945525 58945526 - T ZNF132 Frame_Shift_Ins p.R429Kfs*4 0.10 TCGA-CN-6019-01 1 102270200 102270200 A G OLFM3 Missense_Mutation p.F324S 0.25 tolerated(0.25) benign(0.258) TCGA-CN-6019-01 1 109812137 109812137 G T CELSR2 Missense_Mutation p.V2302F 0.19 deleterious(0.02) possibly_damaging(0.683) TCGA-CN-6019-01 1 160769743 160769743 A T LY9 Missense_Mutation p.I109F 0.22 tolerated(0.23) possibly_damaging(0.677) TCGA-CN-6019-01 1 175046803 175046803 C T TNN Silent p.N83N 0.24 TCGA-CN-6019-01 1 179076780 179076780 A G ABL2 3'UTR 0.15 TCGA-CN-6019-01 1 215940123 215940123 C G USH2A Missense_Mutation p.Q3649H 0.19 benign(0.078) TCGA-CN-6019-01 1 216373318 216373318 T A USH2A Missense_Mutation p.L1154F 0.14 probably_damaging(0.987) TCGA-CN-6019-01 1 243419395 243419395 G C SDCCAG8 5'UTR 0.38 TCGA-CN-6019-01 1 78099026 78099026 C T ZZZ3 Missense_Mutation p.R5Q 0.11 deleterious(0) probably_damaging(0.997) TCGA-CN-6019-01 1 97272478 97272478 C T PTBP2 Silent p.L379L 0.08 TCGA-CN-6019-01 20 15210612 15210612 G T MACROD2 Missense_Mutation p.A149S 0.15 tolerated(0.13) possibly_damaging(0.662) TCGA-CN-6019-01 20 20150070 20150070 G A C20orf26 Missense_Mutation p.D451N 0.16 deleterious(0) possibly_damaging(0.765) TCGA-CN-6019-01 20 35060815 35060815 G A DLGAP4 Missense_Mutation p.R232H 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-CN-6019-01 20 46254145 46254145 G A NCOA3 Missense_Mutation p.D93N 0.30 deleterious(0.04) probably_damaging(0.995) TCGA-CN-6019-01 20 58330263 58330263 G A PHACTR3 Missense_Mutation p.D129N 0.23 tolerated(0.23) benign(0.002) TCGA-CN-6019-01 21 10920139 10920139 C T TPTE Missense_Mutation p.R372K 0.11 deleterious(0.01) possibly_damaging(0.897) TCGA-CN-6019-01 21 10944746 10944746 G T TPTE Missense_Mutation p.T163N 0.05 deleterious(0.01) possibly_damaging(0.449) TCGA-CN-6019-01 21 22906914 22906914 C A NCAM2 Missense_Mutation p.T780N 0.19 deleterious(0.02) benign(0.235) TCGA-CN-6019-01 21 31768401 31768401 C T KRTAP13-1 5'UTR 0.21 TCGA-CN-6019-01 21 43332500 43332500 C A C2CD2 Missense_Mutation p.R298S 0.14 tolerated(0.14) benign(0.001) TCGA-CN-6019-01 22 35689036 35689037 TG - HMGXB4 Frame_Shift_Del p.A565Pfs*13 0.13 TCGA-CN-6019-01 2 105716239 105716239 G A MRPS9 3'UTR 0.33 TCGA-CN-6019-01 2 139316621 139316621 A C SPOPL Silent p.I170I 0.15 TCGA-CN-6019-01 2 139316682 139316682 G T SPOPL Missense_Mutation p.G191C 0.21 deleterious(0) probably_damaging(0.992) TCGA-CN-6019-01 2 139316683 139316683 G T SPOPL Missense_Mutation p.G191V 0.20 deleterious(0) probably_damaging(0.962) TCGA-CN-6019-01 2 160031502 160031502 C G TANC1 Nonsense_Mutation p.Y514* 0.13 TCGA-CN-6019-01 2 178098950 178098950 A C NFE2L2 Missense_Mutation p.V32G 0.15 deleterious(0.01) benign(0.066) TCGA-CN-6019-01 2 178936794 178936794 C T PDE11A Missense_Mutation p.S124N 0.23 tolerated(0.52) possibly_damaging(0.483) TCGA-CN-6019-01 2 179598558 179598558 G T TTN Silent p.T5186T 0.17 TCGA-CN-6019-01 2 179640610 179640610 G A TTN Missense_Mutation p.S1994L 0.14 TCGA-CN-6019-01 2 211532931 211532931 A T CPS1 Missense_Mutation p.I1348F 0.20 tolerated(0.33) possibly_damaging(0.742) TCGA-CN-6019-01 2 21255246 21255246 C T APOB Silent p.A444A 0.06 TCGA-CN-6019-01 2 219609873 219609873 A G TTLL4 Missense_Mutation p.E568G 0.23 deleterious(0.02) benign(0.175) TCGA-CN-6019-01 2 225365129 225365129 T A CUL3 Nonsense_Mutation p.K521* 0.15 TCGA-CN-6019-01 2 25463264 25463264 G A DNMT3A Silent p.P743P 0.21 TCGA-CN-6019-01 2 54753530 54753530 T C SPTBN1 5'UTR 0.24 TCGA-CN-6019-01 2 55808822 55808822 T A SMEK2 Missense_Mutation p.I416F 0.19 deleterious(0) benign(0.015) TCGA-CN-6019-01 3 130283942 130283942 G T COL6A6 Missense_Mutation p.V256L 0.14 tolerated(0.11) benign(0.036) TCGA-CN-6019-01 3 130287412 130287412 G C COL6A6 Missense_Mutation p.D789H 0.08 deleterious(0.02) probably_damaging(0.968) TCGA-CN-6019-01 3 133372361 133372361 C T TOPBP1 Silent p.K250K 0.20 TCGA-CN-6019-01 3 1363354 1363355 - GA CNTN6 Frame_Shift_Ins p.R263Efs*91 0.13 TCGA-CN-6019-01 3 147109007 147109007 C T ZIC4 Missense_Mutation p.E289K 0.13 deleterious(0.03) benign(0.219) TCGA-CN-6019-01 3 147113980 147113980 A T ZIC4 Missense_Mutation p.F166Y 0.10 deleterious(0.01) possibly_damaging(0.878) TCGA-CN-6019-01 3 154138953 154138953 T C GPR149 Missense_Mutation p.I500V 0.16 tolerated(0.68) benign(0.002) TCGA-CN-6019-01 3 16475413 16475413 C T RFTN1 Missense_Mutation p.E93K 0.21 tolerated(0.08) benign(0.187) TCGA-CN-6019-01 3 35730853 35730853 T A ARPP21 Missense_Mutation p.I154N 0.18 deleterious(0) possibly_damaging(0.551) TCGA-CN-6019-01 3 46786154 46786154 G T PRSS45 Missense_Mutation p.T31N 0.12 deleterious(0) possibly_damaging(0.904) TCGA-CN-6019-01 3 47277951 47277951 G A KIF9 Missense_Mutation p.R695C 0.28 deleterious(0) probably_damaging(0.998) TCGA-CN-6019-01 3 96533606 96533606 G T EPHA6 Missense_Mutation p.G47W 0.16 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CN-6019-01 4 113468532 113468532 T G C4orf21 Missense_Mutation p.D1836A 0.13 deleterious(0) probably_damaging(0.999) TCGA-CN-6019-01 4 121742406 121742406 T A PRDM5 Missense_Mutation p.E132V 0.23 deleterious(0) possibly_damaging(0.701) TCGA-CN-6019-01 4 155505421 155505421 C G FGA Missense_Mutation p.G819A 0.22 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 4 162697070 162697070 G T FSTL5 Missense_Mutation p.A189E 0.16 tolerated(0.27) benign(0.004) TCGA-CN-6019-01 4 184938290 184938290 C T STOX2 Silent p.N878N 0.21 TCGA-CN-6019-01 4 20852192 20852192 G A KCNIP4 Nonsense_Mutation p.Q88* 0.17 TCGA-CN-6019-01 4 46043265 46043265 G T GABRG1 Missense_Mutation p.P380T 0.19 tolerated(0.28) benign(0.001) TCGA-CN-6019-01 4 54915177 54915177 C A CHIC2 Missense_Mutation p.C92F 0.31 tolerated(0.14) probably_damaging(1) TCGA-CN-6019-01 5 118810155 118810155 G A HSD17B4 Missense_Mutation p.D119N 0.13 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 5 156349204 156349204 C A TIMD4 Missense_Mutation p.M306I 0.14 tolerated(0.25) benign(0.001) TCGA-CN-6019-01 5 15928334 15928334 A T FBXL7 Missense_Mutation p.R155W 0.33 deleterious(0.01) possibly_damaging(0.729) TCGA-CN-6019-01 5 171517330 171517330 G A STK10 Missense_Mutation p.R531C 0.03 deleterious(0) probably_damaging(0.997) TCGA-CN-6019-01 5 33576173 33576173 C T ADAMTS12 Missense_Mutation p.G1320R 0.21 deleterious(0) probably_damaging(0.957) TCGA-CN-6019-01 6 111409193 111409193 T C SLC16A10 Missense_Mutation p.C80R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-6019-01 6 123101594 123101594 G T FABP7 Missense_Mutation p.D78Y 0.09 deleterious(0) probably_damaging(0.994) TCGA-CN-6019-01 6 131191188 131191188 C T EPB41L2 Missense_Mutation p.E708K 0.08 tolerated(0.05) probably_damaging(0.952) TCGA-CN-6019-01 6 133783834 133783834 G T EYA4 Missense_Mutation p.C219F 0.22 tolerated(1) possibly_damaging(0.493) TCGA-CN-6019-01 6 151152187 151152187 G C PLEKHG1 Missense_Mutation p.G647A 0.17 tolerated(0.14) probably_damaging(0.999) TCGA-CN-6019-01 6 152501328 152501328 G T SYNE1 Missense_Mutation p.S7801R 0.19 probably_damaging(0.997) TCGA-CN-6019-01 6 152529258 152529258 A T SYNE1 Missense_Mutation p.I7558N 0.08 probably_damaging(0.994) TCGA-CN-6019-01 6 27834730 27834730 G T HIST1H1B Missense_Mutation p.P193H 0.19 deleterious(0) unknown(0) TCGA-CN-6019-01 6 30574254 30574254 G A PPP1R10 Missense_Mutation p.R209C 0.12 deleterious(0) possibly_damaging(0.893) TCGA-CN-6019-01 6 33236966 33236966 G A VPS52 Nonsense_Mutation p.R125* 0.06 TCGA-CN-6019-01 6 51923195 51923195 G T PKHD1 Missense_Mutation p.P480T 0.22 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 6 64416739 64416739 A G PHF3 Silent p.V1228V 0.23 TCGA-CN-6019-01 6 66094289 66094289 C A EYS Missense_Mutation p.G430V 0.10 deleterious(0) probably_damaging(0.988) TCGA-CN-6019-01 6 66094290 66094290 C A EYS Nonsense_Mutation p.G430* 0.09 TCGA-CN-6019-01 7 103207056 103207056 G C RELN Missense_Mutation p.P1580R 0.23 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 7 127251714 127251714 A G PAX4 Missense_Mutation p.V255A 0.16 tolerated(0.13) benign(0.02) TCGA-CN-6019-01 7 137567275 137567275 G A CREB3L2 Missense_Mutation p.S457F 0.12 deleterious(0.01) benign(0.241) TCGA-CN-6019-01 7 138604033 138604033 C T KIAA1549 Silent p.P113P 0.10 TCGA-CN-6019-01 7 148288032 148288032 T G C7orf33 Silent p.V5V 0.20 TCGA-CN-6019-01 7 26225151 26225151 T C NFE2L3 Silent p.C611C 0.13 TCGA-CN-6019-01 7 73008629 73008629 G A MLXIPL Silent p.Y805Y 0.19 TCGA-CN-6019-01 7 73151996 73151996 T A ABHD11 Missense_Mutation p.S120C 0.11 deleterious(0.02) benign(0.304) TCGA-CN-6019-01 7 90895658 90895658 G T FZD1 Missense_Mutation p.R488L 0.15 deleterious(0.04) possibly_damaging(0.451) TCGA-CN-6019-01 7 92905556 92905556 A T CCDC132 Missense_Mutation p.E294V 0.24 tolerated(0.08) possibly_damaging(0.56) TCGA-CN-6019-01 7 94058730 94058730 A G COL1A2 Silent p.V1314V 0.09 TCGA-CN-6019-01 8 114449052 114449052 G C CSMD3 Missense_Mutation p.A11G 0.20 tolerated_low_confidence(0.25) benign(0) TCGA-CN-6019-01 8 120595959 120595959 C G ENPP2 Missense_Mutation p.C566S 0.13 deleterious(0) probably_damaging(0.991) TCGA-CN-6019-01 8 139649017 139649017 C T COL22A1 Missense_Mutation p.A1175T 0.16 unknown(0) TCGA-CN-6019-01 8 145095233 145095233 A T SPATC1 Missense_Mutation p.N212I 0.08 deleterious(0) possibly_damaging(0.885) TCGA-CN-6019-01 8 146054833 146054834 - TCC ZNF7 Intron 0.20 TCGA-CN-6019-01 8 62212794 62212794 C A CLVS1 Nonsense_Mutation p.Y136* 0.20 TCGA-CN-6019-01 8 71036232 71036232 T A NCOA2 Missense_Mutation p.M1394L 0.16 tolerated(0.09) benign(0.001) TCGA-CN-6019-01 8 96259940 96259940 G A C8orf37 Missense_Mutation p.R177W 0.13 deleterious(0) probably_damaging(1) TCGA-CN-6019-01 9 100862405 100862405 G A TRIM14 Silent p.F115F 0.15 TCGA-CN-6019-01 9 103046750 103046750 C T INVS Missense_Mutation p.P645S 0.17 tolerated(0.86) benign(0.004) TCGA-CN-6019-01 9 113637698 113637698 G A LPAR1 3'UTR 0.15 TCGA-CN-6019-01 9 139345823 139345823 G C SEC16A Missense_Mutation p.P2066R 0.11 tolerated(0.16) probably_damaging(0.918) TCGA-CN-6019-01 9 35707795 35707795 T A TLN1 Missense_Mutation p.K1522M 0.35 deleterious(0) probably_damaging(0.973) TCGA-CN-6019-01 X 104463623 104463623 G C TEX13A 3'UTR 0.38 TCGA-CN-6019-01 X 118221839 118221839 C A KIAA1210 Silent p.L1118L 0.07 TCGA-CN-6019-01 X 125685199 125685199 C T DCAF12L1 3'UTR 0.27 TCGA-CN-6019-01 X 73064328 73064328 T C XIST RNA 0.26 TCGA-CN-6020-01 10 106160509 106160509 G C CCDC147 Missense_Mutation p.E629D 0.14 deleterious(0.01) probably_damaging(0.919) TCGA-CN-6020-01 10 129904685 129904685 C G MKI67 Missense_Mutation p.D1807H 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-CN-6020-01 10 129905202 129905202 C G MKI67 Missense_Mutation p.K1634N 0.04 deleterious(0.01) possibly_damaging(0.861) TCGA-CN-6020-01 10 131640443 131640443 C T EBF3 Missense_Mutation p.V428I 0.12 tolerated_low_confidence(0.34) benign(0.279) TCGA-CN-6020-01 10 135233650 135233650 C T MTG1 Missense_Mutation p.P329L 0.20 tolerated_low_confidence(0.22) benign(0.002) TCGA-CN-6020-01 10 22022748 22022748 C T MLLT10 Missense_Mutation p.P850S 0.24 tolerated(0.26) probably_damaging(0.998) TCGA-CN-6020-01 10 43678751 43678751 C T CSGALNACT2 Nonsense_Mutation p.R464* 0.04 TCGA-CN-6020-01 10 54053631 54053631 G C PRKG1 Missense_Mutation p.D678H 0.11 deleterious(0) probably_damaging(0.985) TCGA-CN-6020-01 10 85984686 85984686 G T LRIT2 Missense_Mutation p.L99M 0.06 deleterious(0) probably_damaging(1) TCGA-CN-6020-01 10 96827015 96827015 C T CYP2C8 Missense_Mutation p.R144H 0.28 deleterious(0.01) possibly_damaging(0.832) TCGA-CN-6020-01 11 1103265 1103265 C T MUC2 Missense_Mutation p.S2672L 0.05 unknown(0) TCGA-CN-6020-01 11 18318517 18318517 G C HPS5 Missense_Mutation p.I446M 0.12 deleterious(0.01) probably_damaging(0.921) TCGA-CN-6020-01 11 27362288 27362288 G A CCDC34 Missense_Mutation p.R288C 0.06 tolerated(0.08) possibly_damaging(0.63) TCGA-CN-6020-01 11 47823375 47823375 C A NUP160 Missense_Mutation p.Q961H 0.13 tolerated(0.07) probably_damaging(0.96) TCGA-CN-6020-01 11 5153873 5153873 G T OR52A5 5'Flank 0.17 TCGA-CN-6020-01 11 55418983 55419001 GGTACCATTGCTCTGGGGA - OR4S2 Frame_Shift_Del p.G202Vfs*6 0.20 TCGA-CN-6020-01 11 58919457 58919457 A T FAM111A Missense_Mutation p.M106L 0.13 tolerated(0.28) benign(0.013) TCGA-CN-6020-01 11 62458142 62458142 C T BSCL2 Silent p.E392E 0.04 TCGA-CN-6020-01 11 6632981 6632981 T C TAF10 Missense_Mutation p.S101G 0.17 tolerated(0.26) benign(0.002) TCGA-CN-6020-01 11 67262617 67262617 G A PITPNM1 Silent p.V854V 0.08 TCGA-CN-6020-01 11 72292985 72292985 G A PDE2A Silent p.L620L 0.08 TCGA-CN-6020-01 11 7960482 7960482 C G OR10A3 Missense_Mutation p.E196Q 0.10 deleterious(0.04) probably_damaging(1) TCGA-CN-6020-01 11 83585526 83585526 G A DLG2 Missense_Mutation p.S501F 0.21 deleterious(0.04) possibly_damaging(0.904) TCGA-CN-6020-01 11 92577460 92577460 G A FAT3 Missense_Mutation p.E3643K 0.08 benign(0.119) TCGA-CN-6020-01 12 126128737 126128737 G A TMEM132B Nonsense_Mutation p.W513* 0.10 TCGA-CN-6020-01 12 13716470 13716470 C A GRIN2B Silent p.S1234S 0.08 TCGA-CN-6020-01 12 15035947 15035947 G A MGP Silent p.F68F 0.10 TCGA-CN-6020-01 12 27117728 27117728 A G FGFR1OP2 3'UTR 0.25 TCGA-CN-6020-01 12 40643742 40643742 T A LRRK2 Missense_Mutation p.L318H 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-CN-6020-01 12 41967396 41967396 C T PDZRN4 Missense_Mutation p.R939C 0.21 deleterious(0) probably_damaging(0.998) TCGA-CN-6020-01 12 49221458 49221458 C T CACNB3 Missense_Mutation p.R411C 0.15 deleterious_low_confidence(0) benign(0.394) TCGA-CN-6020-01 12 49721061 49721061 G A TROAP Missense_Mutation p.G280D 0.16 deleterious(0) probably_damaging(0.978) TCGA-CN-6020-01 12 53012018 53012018 C T KRT73 Silent p.S97S 0.09 TCGA-CN-6020-01 12 69080714 69080714 C A NUP107 5'UTR 0.12 TCGA-CN-6020-01 12 70929923 70929923 C A PTPRB Missense_Mutation p.R1988I 0.11 deleterious(0) probably_damaging(0.913) TCGA-CN-6020-01 12 7653982 7653982 C T CD163 Silent p.E70E 0.14 TCGA-CN-6020-01 12 9001323 9001323 G A A2ML1 Missense_Mutation p.G614E 0.14 tolerated(0.15) benign(0.017) TCGA-CN-6020-01 12 988982 988982 C T WNK1 Silent p.L873L 0.20 TCGA-CN-6020-01 13 42295521 42295521 T A VWA8 Silent p.I983I 0.06 TCGA-CN-6020-01 13 61985826 61985826 G A PCDH20 Silent p.G802G 0.19 TCGA-CN-6020-01 14 20692714 20692714 A T OR11H6 Silent p.S282S 0.06 TCGA-CN-6020-01 15 25331679 25331679 G A SNORD116-19 RNA 0.10 TCGA-CN-6020-01 15 28386662 28386662 A C HERC2 Silent p.T3977T 0.06 TCGA-CN-6020-01 15 31323321 31323321 C T TRPM1 Missense_Mutation p.V1015M 0.17 deleterious(0) probably_damaging(1) TCGA-CN-6020-01 15 39874946 39874946 A G THBS1 Missense_Mutation p.N207S 0.09 tolerated(0.13) benign(0.005) TCGA-CN-6020-01 15 44092849 44092849 A T HYPK Missense_Mutation p.E18V 0.36 deleterious(0) possibly_damaging(0.839) TCGA-CN-6020-01 15 57734631 57734631 G C CGNL1 Missense_Mutation p.Q586H 0.19 deleterious(0) probably_damaging(0.989) TCGA-CN-6020-01 15 72668095 72668095 G A HEXA Silent p.F73F 0.13 TCGA-CN-6020-01 15 74919948 74919948 C A CLK3 Missense_Mutation p.D475E 0.23 tolerated(0.12) possibly_damaging(0.823) TCGA-CN-6020-01 15 83718833 83718833 A T BTBD1 Missense_Mutation p.I219N 0.11 deleterious(0) probably_damaging(0.983) TCGA-CN-6020-01 15 90127621 90127621 G T TICRR Missense_Mutation p.A347S 0.21 tolerated(0.23) benign(0.013) TCGA-CN-6020-01 16 10576122 10576122 G A ATF7IP2 3'UTR 0.32 TCGA-CN-6020-01 16 18840818 18840819 TT - SMG1 Frame_Shift_Del p.K3131Sfs*4 0.16 TCGA-CN-6020-01 16 20322503 20322503 G A GP2 3'UTR 0.22 TCGA-CN-6020-01 16 55530841 55530841 C T MMP2 Silent p.F492F 0.08 TCGA-CN-6020-01 16 66432402 66432402 G A CDH5 Missense_Mutation p.R510Q 0.06 tolerated(0.83) benign(0.001) TCGA-CN-6020-01 16 74537551 74537551 G A GLG1 Nonsense_Mutation p.Q218* 0.16 TCGA-CN-6020-01 17 28964242 28964242 G A LRRC37BP1 RNA 0.07 TCGA-CN-6020-01 17 29062050 29062050 G T CTD-2349P21.5 3'Flank 0.27 TCGA-CN-6020-01 17 34073141 34073141 G A GAS2L2 Missense_Mutation p.P459S 0.17 deleterious(0.04) benign(0.189) TCGA-CN-6020-01 17 56233093 56233093 C T OR4D1 Silent p.S193S 0.42 TCGA-CN-6020-01 17 73264171 73264171 A T MIF4GD Missense_Mutation p.I103N 0.12 deleterious(0) probably_damaging(0.994) TCGA-CN-6020-01 17 7578177 7578177 C A TP53 Missense_Mutation p.E224D 0.54 tolerated(0.06) benign(0.085) TCGA-CN-6020-01 17 76420210 76420210 C G DNAH17 Missense_Mutation p.G4412A 0.17 benign(0.328) TCGA-CN-6020-01 18 10672764 10672764 C T PIEZO2 Silent p.P2643P 0.11 TCGA-CN-6020-01 18 20837210 20837210 G A CABLES1 Missense_Mutation p.R594Q 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-CN-6020-01 18 74680345 74680345 G C ZNF236 3'UTR 0.15 TCGA-CN-6020-01 18 76873289 76873289 A T ATP9B Missense_Mutation p.I165L 0.14 tolerated(0.14) benign(0.006) TCGA-CN-6020-01 19 10225067 10225067 T A PPAN-P2RY11 Missense_Mutation p.S680T 0.11 deleterious_low_confidence(0.04) probably_damaging(0.981) TCGA-CN-6020-01 19 12014459 12014459 G A ZNF69 Silent p.Q31Q 0.11 TCGA-CN-6020-01 19 14938087 14938087 C T OR7A5 3'Flank 0.15 TCGA-CN-6020-01 19 17038880 17038880 G A CPAMD8 Silent p.F1150F 0.10 TCGA-CN-6020-01 19 19371769 19371769 G A HAPLN4 Missense_Mutation p.R113C 0.05 deleterious(0) probably_damaging(0.98) TCGA-CN-6020-01 19 35435405 35435405 A T ZNF30 Missense_Mutation p.Y513F 0.12 tolerated(0.12) possibly_damaging(0.894) TCGA-CN-6020-01 19 36003956 36003956 G A DMKN Missense_Mutation p.A141V 0.16 deleterious(0) possibly_damaging(0.627) TCGA-CN-6020-01 19 36215887 36215887 C T KMT2B Intron 0.28 TCGA-CN-6020-01 19 37879433 37879433 G C ZNF527 Missense_Mutation p.R161T 0.04 tolerated(0.37) benign(0.034) TCGA-CN-6020-01 19 38849158 38849158 T C CATSPERG Missense_Mutation p.Y485H 0.15 deleterious(0) possibly_damaging(0.607) TCGA-CN-6020-01 19 44832196 44832196 T G ZNF112 Missense_Mutation p.H711P 0.07 deleterious(0) probably_damaging(0.999) TCGA-CN-6020-01 19 46998632 46998632 C T PNMAL2 Missense_Mutation p.E31K 0.30 deleterious(0.03) benign(0.235) TCGA-CN-6020-01 19 57327205 57327205 T G PEG3 Missense_Mutation p.N869H 0.10 tolerated(0.77) benign(0.005) TCGA-CN-6020-01 19 57955191 57955191 G A ZNF749 Silent p.E225E 0.19 TCGA-CN-6020-01 19 9272163 9272163 G C ZNF317 3'UTR 0.21 TCGA-CN-6020-01 1 100620742 100620742 G A LRRC39 Missense_Mutation p.T226M 0.19 deleterious(0) probably_damaging(0.998) TCGA-CN-6020-01 1 111216896 111216896 A T KCNA3 Missense_Mutation p.I179N 0.18 deleterious(0) probably_damaging(0.984) TCGA-CN-6020-01 1 118166445 118166445 G T FAM46C Missense_Mutation p.V319L 0.21 deleterious(0.01) benign(0.148) TCGA-CN-6020-01 1 155640205 155640205 T C YY1AP1 Missense_Mutation p.S350G 0.34 tolerated(0.05) benign(0.281) TCGA-CN-6020-01 1 200550376 200550376 T C KIF14 Silent p.E1096E 0.18 TCGA-CN-6020-01 1 220321019 220321019 G T IARS2 3'UTR 0.29 TCGA-CN-6020-01 1 230839947 230839947 C G AGT Missense_Mutation p.V421L 0.25 tolerated(0.12) benign(0.106) TCGA-CN-6020-01 1 237777871 237777871 G A RYR2 Missense_Mutation p.E1815K 0.11 benign(0.288) TCGA-CN-6020-01 1 237947096 237947096 G A RYR2 Silent p.S4028S 0.17 TCGA-CN-6020-01 1 240072485 240072485 G A CHRM3 Silent p.S578S 0.14 TCGA-CN-6020-01 1 247463804 247463804 G A ZNF496 3'UTR 0.21 TCGA-CN-6020-01 1 247978352 247978352 G A OR14A16 Missense_Mutation p.P227L 0.13 deleterious(0) possibly_damaging(0.582) TCGA-CN-6020-01 1 26888033 26888033 A T RPS6KA1 Missense_Mutation p.E499V 0.10 deleterious(0) possibly_damaging(0.869) TCGA-CN-6020-01 1 46496833 46496833 C T MAST2 Nonsense_Mutation p.Q955* 0.09 TCGA-CN-6020-01 1 55266812 55266812 C T TTC22 Missense_Mutation p.D9N 0.09 deleterious(0.02) unknown(0) TCGA-CN-6020-01 1 6529217 6529217 C T PLEKHG5 Missense_Mutation p.E791K 0.16 tolerated(0.21) benign(0.031) TCGA-CN-6020-01 1 70716156 70716156 A G SRSF11 Silent p.E409E 0.07 TCGA-CN-6020-01 1 75683637 75683637 G T SLC44A5 Missense_Mutation p.T513K 0.08 deleterious(0) probably_damaging(0.994) TCGA-CN-6020-01 1 85331150 85331150 G A LPAR3 Silent p.N218N 0.12 TCGA-CN-6020-01 1 89476691 89476693 CTT - GBP3 In_Frame_Del p.E419del 0.13 TCGA-CN-6020-01 1 89657032 89657032 G A GBP4 Silent p.F276F 0.09 TCGA-CN-6020-01 20 47888006 47888006 G A ZNFX1 Missense_Mutation p.R115C 0.07 tolerated_low_confidence(0.12) benign(0.006) TCGA-CN-6020-01 20 4855261 4855261 T A SLC23A2 Silent p.G302G 0.05 TCGA-CN-6020-01 20 50407919 50407919 G A SALL4 Missense_Mutation p.A368V 0.12 tolerated(0.96) benign(0.079) TCGA-CN-6020-01 21 11049619 11049619 T A BAGE2 Intron 0.03 TCGA-CN-6020-01 22 19808242 19808242 G A GNB1L Nonsense_Mutation p.Q45* 0.10 TCGA-CN-6020-01 22 32756539 32756539 G A RFPL3 Missense_Mutation p.R225H 0.16 tolerated(0.53) benign(0.002) TCGA-CN-6020-01 22 38823566 38823566 G A KCNJ4 Missense_Mutation p.A191V 0.11 deleterious(0) probably_damaging(0.998) TCGA-CN-6020-01 2 109116150 109116150 A G GCC2 Missense_Mutation p.I1642V 0.06 tolerated(0.07) benign(0.005) TCGA-CN-6020-01 2 130911487 130911487 T A SMPD4 Missense_Mutation p.I600F 0.08 deleterious(0.03) probably_damaging(0.923) TCGA-CN-6020-01 2 152385794 152385794 G C NEB Missense_Mutation p.S7222C 0.10 probably_damaging(0.993) TCGA-CN-6020-01 2 158272595 158272595 C T CYTIP Missense_Mutation p.G225E 0.20 tolerated(0.21) benign(0.079) TCGA-CN-6020-01 2 170492733 170492733 G T PPIG Silent p.G383G 0.14 TCGA-CN-6020-01 2 179434069 179434069 C G TTN Missense_Mutation p.R25597T 0.07 TCGA-CN-6020-01 2 179664379 179664379 G A TTN Missense_Mutation p.P250L 0.29 TCGA-CN-6020-01 2 197105285 197105285 A G HECW2 Silent p.L1218L 0.15 TCGA-CN-6020-01 2 203621983 203621983 G A FAM117B Silent p.Q384Q 0.07 TCGA-CN-6020-01 2 220416430 220416430 G A OBSL1 Missense_Mutation p.S1835L 0.14 tolerated(0.07) benign(0.021) TCGA-CN-6020-01 2 234627538 234627538 C G UGT1A4 Silent p.P24P 0.13 TCGA-CN-6020-01 2 241463753 241463753 T C ANKMY1 Missense_Mutation p.M372V 0.18 tolerated(0.62) benign(0.001) TCGA-CN-6020-01 2 55462059 55462059 G A RPS27A Silent p.K94K 0.41 TCGA-CN-6020-01 2 61570972 61570972 A G USP34 Silent p.I826I 0.15 TCGA-CN-6020-01 2 76975806 76975806 G T LRRTM4 3'UTR 0.10 TCGA-CN-6020-01 3 113377897 113377897 C T KIAA2018 Missense_Mutation p.E878K 0.28 benign(0.021) TCGA-CN-6020-01 3 149089484 149089484 G A TM4SF1 Missense_Mutation p.S195F 0.18 deleterious(0.04) possibly_damaging(0.748) TCGA-CN-6020-01 3 160232973 160232973 T A KPNA4 Intron 0.08 TCGA-CN-6020-01 3 170928972 170928972 C G TNIK Missense_Mutation p.R80P 0.15 deleterious(0.01) unknown(0) TCGA-CN-6020-01 3 183381346 183381346 G C KLHL24 Missense_Mutation p.E341Q 0.04 tolerated(0.69) benign(0.012) TCGA-CN-6020-01 3 193166066 193166066 C T ATP13A4 Missense_Mutation p.R694Q 0.10 tolerated(0.14) benign(0.058) TCGA-CN-6020-01 3 49690316 49690316 G A BSN Silent p.L1109L 0.12 TCGA-CN-6020-01 3 9426231 9426231 A G THUMPD3 Silent p.V461V 0.24 TCGA-CN-6020-01 3 96706382 96706382 A G EPHA6 Missense_Mutation p.N220S 0.06 deleterious(0) probably_damaging(0.997) TCGA-CN-6020-01 4 1017629 1017629 C T FGFRL1 Missense_Mutation p.S153F 0.33 deleterious(0.02) possibly_damaging(0.811) TCGA-CN-6020-01 4 167658711 167658711 T A SPOCK3 Missense_Mutation p.T350S 0.22 tolerated(0.27) benign(0.023) TCGA-CN-6020-01 4 176573064 176573064 C G GPM6A Missense_Mutation p.M154I 0.06 tolerated(0.8) benign(0.011) TCGA-CN-6020-01 4 177190237 177190237 C T ASB5 Missense_Mutation p.R8Q 0.13 tolerated_low_confidence(0.27) benign(0.295) TCGA-CN-6020-01 4 3201579 3201579 C T HTT Missense_Mutation p.P1830L 0.11 possibly_damaging(0.656) TCGA-CN-6020-01 4 69513072 69513072 C A UGT2B15 Missense_Mutation p.R448I 0.05 deleterious(0.02) benign(0.008) TCGA-CN-6020-01 4 70080064 70080064 A T UGT2B11 Missense_Mutation p.F126Y 0.13 deleterious(0.02) benign(0.005) TCGA-CN-6020-01 4 77276585 77276585 C A CCDC158 Missense_Mutation p.M726I 0.21 deleterious(0.02) benign(0.009) TCGA-CN-6020-01 4 87691069 87691069 G C PTPN13 Missense_Mutation p.G1551A 0.06 deleterious(0) possibly_damaging(0.681) TCGA-CN-6020-01 5 1057669 1057669 C A SLC12A7 Missense_Mutation p.W981C 0.05 deleterious(0.01) probably_damaging(0.986) TCGA-CN-6020-01 5 112174376 112174376 C A APC Missense_Mutation p.L1029I 0.07 probably_damaging(0.999) TCGA-CN-6020-01 5 131993989 131993989 G T IL13 Silent p.V37V 0.26 TCGA-CN-6020-01 5 13891111 13891111 A T DNAH5 Missense_Mutation p.C851S 0.07 benign(0.152) TCGA-CN-6020-01 5 140207691 140207691 G A PCDHA6 Silent p.P5P 0.14 TCGA-CN-6020-01 5 154179273 154179273 C T LARP1 Silent p.L423L 0.09 TCGA-CN-6020-01 5 24492957 24492957 G C CDH10 Silent p.V531V 0.03 TCGA-CN-6020-01 5 37331895 37331895 C G NUP155 Silent p.G507G 0.08 TCGA-CN-6020-01 5 80667569 80667569 C A ACOT12 Missense_Mutation p.E86D 0.27 deleterious(0) probably_damaging(0.997) TCGA-CN-6020-01 6 117896462 117896462 T C GOPC Silent p.E176E 0.15 TCGA-CN-6020-01 6 123124975 123124975 G C SMPDL3A Missense_Mutation p.E245D 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-CN-6020-01 6 28121884 28121884 A G ZKSCAN8 3'UTR 0.27 TCGA-CN-6020-01 6 30231252 30231252 C A HCG17 Intron 0.11 TCGA-CN-6020-01 6 42689520 42689520 G A PRPH2 Silent p.L185L 0.13 TCGA-CN-6020-01 6 44279951 44279951 C T AARS2 Missense_Mutation p.G98D 0.18 deleterious(0.02) possibly_damaging(0.762) TCGA-CN-6020-01 6 74104706 74104706 G T DDX43 Silent p.A26A 0.15 TCGA-CN-6020-01 6 74104707 74104707 C A DDX43 Missense_Mutation p.P27T 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.655) TCGA-CN-6020-01 7 100684155 100684155 G A MUC17 Missense_Mutation p.S3153N 0.33 probably_damaging(0.914) TCGA-CN-6020-01 7 120385968 120385968 C G KCND2 Missense_Mutation p.H534Q 0.11 tolerated_low_confidence(0.65) benign(0.158) TCGA-CN-6020-01 7 130370074 130370074 C A TSGA13 5'UTR 0.06 TCGA-CN-6020-01 7 14378214 14378214 C T DGKB Missense_Mutation p.R684Q 0.04 tolerated(0.36) benign(0.092) TCGA-CN-6020-01 7 154379648 154379648 A G DPP6 Intron 0.13 TCGA-CN-6020-01 7 157178364 157178364 A G DNAJB6 Intron 0.08 TCGA-CN-6020-01 7 22202079 22202079 G T RAPGEF5 Missense_Mutation p.S302Y 0.06 tolerated(1) probably_damaging(0.999) TCGA-CN-6020-01 7 2740214 2740214 C A AMZ1 Missense_Mutation p.F43L 0.08 tolerated(0.54) probably_damaging(0.985) TCGA-CN-6020-01 7 72159743 72159743 G A MIR4650-2 5'Flank 0.10 TCGA-CN-6020-01 7 883114 883115 CG T SUN1 Frame_Shift_Del p.V208Cfs*66 0.17 TCGA-CN-6020-01 7 92138667 92138667 G A PEX1 Missense_Mutation p.P549L 0.16 tolerated(0.08) possibly_damaging(0.533) TCGA-CN-6020-01 8 10469745 10469745 C T RP1L1 Silent p.S621S 0.07 TCGA-CN-6020-01 8 121216036 121216036 G A COL14A1 Silent p.L322L 0.08 TCGA-CN-6020-01 8 144732947 144732947 A T ZNF623 Missense_Mutation p.H302L 0.21 tolerated(0.26) possibly_damaging(0.84) TCGA-CN-6020-01 8 145621932 145621932 C A CPSF1 Nonsense_Mutation p.E903* 0.26 TCGA-CN-6020-01 8 24324479 24324479 C G ADAM7 Missense_Mutation p.S186C 0.12 tolerated(0.18) benign(0.023) TCGA-CN-6020-01 8 38003513 38003513 G A STAR Silent p.F206F 0.04 TCGA-CN-6020-01 8 39626980 39626980 G C ADAM2 Missense_Mutation p.F381L 0.05 deleterious(0.04) benign(0) TCGA-CN-6020-01 8 42821703 42821703 G C HOOK3 Silent p.L289L 0.04 TCGA-CN-6020-01 8 48801649 48801649 C A PRKDC Silent p.L1401L 0.09 TCGA-CN-6020-01 8 48882491 48882491 A C MCM4 Silent p.A436A 0.19 TCGA-CN-6020-01 8 55541982 55541982 T C RP1 Missense_Mutation p.I1847T 0.27 tolerated(0.17) benign(0.018) TCGA-CN-6020-01 8 99006720 99006720 G T MATN2 Missense_Mutation p.C365F 0.23 deleterious(0) probably_damaging(1) TCGA-CN-6020-01 9 116823281 116823281 G A AMBP Silent p.Y317Y 0.05 TCGA-CN-6020-01 9 23731115 23731115 A T ELAVL2 Missense_Mutation p.L80M 0.32 deleterious(0) probably_damaging(0.912) TCGA-CN-6020-01 9 37735705 37735705 G A FRMPD1 Missense_Mutation p.V459I 0.19 deleterious(0.04) possibly_damaging(0.84) TCGA-CN-6020-01 X 105011054 105011054 C T IL1RAPL2 Silent p.F487F 0.19 TCGA-CN-6020-01 X 105450642 105450642 G A MUM1L1 Nonsense_Mutation p.W406* 0.50 TCGA-CN-6020-01 X 117775257 117775257 C T DOCK11 Nonsense_Mutation p.Q1417* 0.14 TCGA-CN-6020-01 X 134421749 134421749 C T ZNF75D Missense_Mutation p.D285N 0.10 tolerated(0.12) benign(0.059) TCGA-CN-6020-01 X 29417365 29417365 A G IL1RAPL1 Missense_Mutation p.T215A 0.20 deleterious(0) probably_damaging(0.992) TCGA-CN-6020-01 X 34148157 34148157 C A FAM47A Missense_Mutation p.G747C 0.15 deleterious(0) probably_damaging(0.998) TCGA-CN-6021-01 10 100481543 100481543 C - HPSE2 Frame_Shift_Del p.G276Afs*11 0.35 TCGA-CN-6021-01 10 112724466 112724466 C G SHOC2 Nonsense_Mutation p.S117* 0.36 TCGA-CN-6021-01 10 124336232 124336232 T A DMBT1 Missense_Mutation p.C201S 0.42 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 10 131565234 131565234 G A MGMT Silent p.S230S 0.49 TCGA-CN-6021-01 10 17891588 17891588 G T MRC1L1 Missense_Mutation p.D357Y 0.23 benign(0.275) TCGA-CN-6021-01 10 32197132 32197132 C A ARHGAP12 Nonsense_Mutation p.E218* 0.19 TCGA-CN-6021-01 10 38345088 38345088 G A ZNF33A Missense_Mutation p.G679E 0.17 tolerated(1) benign(0.041) TCGA-CN-6021-01 10 48387902 48387902 G T RBP3 Silent p.L992L 0.25 TCGA-CN-6021-01 10 50820091 50820091 G A SLC18A3 Silent p.G435G 0.38 TCGA-CN-6021-01 10 50828553 50828553 T G CHAT Missense_Mutation p.W198G 0.32 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 10 6104181 6104181 C - IL2RA 5'UTR 0.27 TCGA-CN-6021-01 10 74813238 74813238 T A P4HA1 Missense_Mutation p.R192W 0.29 deleterious(0) benign(0.287) TCGA-CN-6021-01 10 8006137 8006137 C T TAF3 Nonsense_Mutation p.Q222* 0.36 TCGA-CN-6021-01 10 95791541 95791541 T C PLCE1 Silent p.N246N 0.46 TCGA-CN-6021-01 10 96702062 96702062 G A CYP2C9 Missense_Mutation p.A149T 0.43 tolerated(0.08) possibly_damaging(0.825) TCGA-CN-6021-01 11 105924356 105924356 A T KBTBD3 Missense_Mutation p.C354S 0.32 tolerated(0.13) probably_damaging(0.987) TCGA-CN-6021-01 11 109294845 109294845 T G C11orf87 Missense_Mutation p.C162W 0.12 tolerated_low_confidence(0.07) benign(0.437) TCGA-CN-6021-01 11 118343463 118343463 G A KMT2A Missense_Mutation p.R530K 0.13 possibly_damaging(0.867) TCGA-CN-6021-01 11 123625128 123625128 G A OR6X1 Silent p.Y33Y 0.11 TCGA-CN-6021-01 11 1271213 1271213 C T MUC5B Missense_Mutation p.T4368M 0.10 benign(0.227) TCGA-CN-6021-01 11 134177072 134177072 G A GLB1L3 Missense_Mutation p.G311R 0.46 deleterious(0) probably_damaging(0.998) TCGA-CN-6021-01 11 18112026 18112026 T A SAAL1 Missense_Mutation p.H143L 0.14 tolerated(0.68) benign(0.001) TCGA-CN-6021-01 11 30034289 30034289 C T KCNA4 5'UTR 0.13 TCGA-CN-6021-01 11 43941467 43941467 G A ALKBH3 Splice_Site p.X257_splice 0.13 TCGA-CN-6021-01 11 46701258 46701258 G A ARHGAP1 Missense_Mutation p.R323W 0.15 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 11 47712048 47712048 T A AGBL2 Missense_Mutation p.Q404L 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-CN-6021-01 11 49598445 49598445 C G RP11-707M1.1 RNA 0.43 TCGA-CN-6021-01 11 55587247 55587247 G T OR5D18 Missense_Mutation p.V48L 0.22 tolerated(0.44) benign(0.003) TCGA-CN-6021-01 11 56143856 56143856 G - OR8U1 Frame_Shift_Del p.T254Pfs*27 0.28 TCGA-CN-6021-01 11 57971606 57971606 T G OR1S2 Missense_Mutation p.Q16H 0.14 tolerated(0.13) possibly_damaging(0.625) TCGA-CN-6021-01 11 5906037 5906037 G T OR52E4 Missense_Mutation p.G172V 0.37 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 11 64329824 64329824 C T SLC22A11 Silent p.G246G 0.14 TCGA-CN-6021-01 11 71821488 71821488 G A LRTOMT 3'UTR 0.41 TCGA-CN-6021-01 11 82561547 82561547 C T PRCP Missense_Mutation p.D159N 0.28 tolerated(0.13) benign(0.158) TCGA-CN-6021-01 11 9009771 9009771 C A NRIP3 Missense_Mutation p.S78I 0.43 tolerated(0.21) benign(0.019) TCGA-CN-6021-01 11 9598747 9598747 G T WEE1 Missense_Mutation p.V360F 0.35 deleterious(0) probably_damaging(0.994) TCGA-CN-6021-01 12 100797842 100797842 C A SLC17A8 Missense_Mutation p.H360Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-CN-6021-01 12 112374541 112374541 G A TMEM116 Silent p.I181I 0.25 TCGA-CN-6021-01 12 114260958 114260958 G A RBM19 Intron 0.33 TCGA-CN-6021-01 12 123489976 123489976 G C PITPNM2 Missense_Mutation p.R255G 0.24 deleterious(0.04) probably_damaging(0.994) TCGA-CN-6021-01 12 18234236 18234236 G A RERGL Silent p.I169I 0.25 TCGA-CN-6021-01 12 21350088 21350088 C A SLCO1B1 Silent p.T312T 0.29 TCGA-CN-6021-01 12 32458869 32458869 C T BICD1 Missense_Mutation p.A273V 0.09 tolerated(0.21) benign(0.143) TCGA-CN-6021-01 12 40223995 40223995 C - SLC2A13 Frame_Shift_Del p.G452Vfs*6 0.16 TCGA-CN-6021-01 12 4554546 4554546 C A FGF6 Missense_Mutation p.G64V 0.22 tolerated(0.33) possibly_damaging(0.688) TCGA-CN-6021-01 12 5154798 5154798 C T KCNA5 Silent p.I495I 0.22 TCGA-CN-6021-01 12 53072487 53072487 C T KRT1 Silent p.L215L 0.34 TCGA-CN-6021-01 12 53343350 53343350 G A KRT18 Silent p.K131K 0.26 TCGA-CN-6021-01 12 54385611 54385611 C G RP11-834C11.12 Intron 0.25 TCGA-CN-6021-01 12 55726162 55726162 G T OR6C3 Silent p.P226P 0.38 TCGA-CN-6021-01 12 71314162 71314162 T A PTPRR Missense_Mutation p.R3S 0.19 tolerated_low_confidence(0.39) benign(0.014) TCGA-CN-6021-01 12 71523125 71523125 G T TSPAN8 Missense_Mutation p.L216M 0.12 tolerated(0.05) possibly_damaging(0.706) TCGA-CN-6021-01 12 78444759 78444759 C T NAV3 Missense_Mutation p.T783M 0.27 tolerated(0.43) possibly_damaging(0.882) TCGA-CN-6021-01 12 83290168 83290168 C G TMTC2 Missense_Mutation p.T409R 0.07 deleterious(0) possibly_damaging(0.809) TCGA-CN-6021-01 12 92538007 92538007 C A BTG1 Missense_Mutation p.C122F 0.25 deleterious(0) probably_damaging(0.994) TCGA-CN-6021-01 12 99640640 99640640 C T ANKS1B Missense_Mutation p.D587N 0.26 tolerated(0.29) benign(0.002) TCGA-CN-6021-01 13 113086835 113086835 G A SPACA7 Missense_Mutation p.G175R 0.39 deleterious(0.05) probably_damaging(0.991) TCGA-CN-6021-01 13 113086837 113086837 T A SPACA7 Splice_Site p.X175_splice 0.39 TCGA-CN-6021-01 13 25451323 25451323 T C RNF17 Missense_Mutation p.M1591T 0.47 tolerated(0.17) benign(0.017) TCGA-CN-6021-01 13 27333487 27333487 T A GPR12 Missense_Mutation p.M160L 0.45 tolerated(0.47) benign(0.147) TCGA-CN-6021-01 13 52549007 52549007 C T ATP7B Missense_Mutation p.G117R 0.39 tolerated(0.33) benign(0.142) TCGA-CN-6021-01 13 99449735 99449735 A G DOCK9 Silent p.A1989A 0.43 TCGA-CN-6021-01 14 106757939 106757939 A - IGHV2-26 Frame_Shift_Del p.L23* 0.22 TCGA-CN-6021-01 14 23855572 23855572 C T MYH6 Missense_Mutation p.M1637I 0.10 tolerated(0.1) benign(0.001) TCGA-CN-6021-01 14 24884560 24884560 C G NYNRIN Missense_Mutation p.P1202R 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6021-01 14 38061468 38061468 G A FOXA1 Missense_Mutation p.S174L 0.14 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 14 39597527 39597527 G A GEMIN2 Missense_Mutation p.G203E 0.16 tolerated(1) benign(0.002) TCGA-CN-6021-01 14 44975557 44975557 T A FSCB Missense_Mutation p.N212Y 0.25 tolerated(0.09) possibly_damaging(0.655) TCGA-CN-6021-01 14 53112872 53112872 C G ERO1L Missense_Mutation p.R449T 0.28 deleterious(0) probably_damaging(0.999) TCGA-CN-6021-01 14 64630217 64630217 T A SYNE2 Missense_Mutation p.M5466K 0.22 benign(0.048) TCGA-CN-6021-01 14 66208932 66208932 A C FUT8 Missense_Mutation p.Y511S 0.33 tolerated(0.1) possibly_damaging(0.532) TCGA-CN-6021-01 14 89061001 89061001 T C ZC3H14 Intron 0.27 TCGA-CN-6021-01 14 95030105 95030105 C A SERPINA4 Missense_Mutation p.H96N 0.31 tolerated(0.52) benign(0.028) TCGA-CN-6021-01 15 20588619 20588619 C T HERC2P3 RNA 0.21 TCGA-CN-6021-01 15 28769089 28769089 C T GOLGA8G Missense_Mutation p.M469I 0.11 tolerated(0.1) benign(0.025) TCGA-CN-6021-01 15 35224630 35224630 C T AQR Silent p.L263L 0.37 TCGA-CN-6021-01 15 38643248 38643248 C T SPRED1 Nonsense_Mutation p.Q240* 0.12 TCGA-CN-6021-01 15 43552359 43552359 C G TGM5 Silent p.T109T 0.09 TCGA-CN-6021-01 15 48807700 48807700 T A FBN1 Missense_Mutation p.D451V 0.10 possibly_damaging(0.823) TCGA-CN-6021-01 15 75931846 75931846 G A IMP3 3'UTR 0.25 TCGA-CN-6021-01 15 91835755 91835755 A G SV2B Silent p.P675P 0.11 TCGA-CN-6021-01 16 12798612 12798612 C T CPPED1 Missense_Mutation p.R195Q 0.37 tolerated(0.83) benign(0.006) TCGA-CN-6021-01 16 3293434 3293434 C A MEFV Nonsense_Mutation p.E685* 0.31 TCGA-CN-6021-01 16 58608535 58608535 C A CNOT1 Missense_Mutation p.A653S 0.27 tolerated(0.76) benign(0.014) TCGA-CN-6021-01 16 89251624 89251624 C A CDH15 Silent p.P182P 0.25 TCGA-CN-6021-01 17 12618891 12618891 G A MYOCD Silent p.K59K 0.19 TCGA-CN-6021-01 17 25932786 25932786 G T KSR1 Silent p.V532V 0.29 TCGA-CN-6021-01 17 35297814 35297814 G C LHX1 Splice_Site p.X133_splice 0.21 TCGA-CN-6021-01 17 37564503 37564503 G T MED1 Missense_Mutation p.P1324Q 0.29 tolerated_low_confidence(0.05) unknown(0) TCGA-CN-6021-01 17 38856487 38856487 C G KRT24 Missense_Mutation p.R335P 0.29 deleterious(0.02) possibly_damaging(0.736) TCGA-CN-6021-01 17 40330942 40330942 A G KCNH4 Missense_Mutation p.V60A 0.31 deleterious(0) probably_damaging(0.997) TCGA-CN-6021-01 17 41003593 41003593 G A AOC3 Missense_Mutation p.R78Q 0.14 tolerated(1) benign(0) TCGA-CN-6021-01 17 7579494 7579495 - G TP53 Frame_Shift_Ins p.R65Qfs*84 0.42 TCGA-CN-6021-01 17 78363670 78363670 C G RNF213 Missense_Mutation p.Q5080E 0.35 possibly_damaging(0.524) TCGA-CN-6021-01 18 30554564 30554564 C A CCDC178 Missense_Mutation p.A824S 0.25 tolerated(0.16) probably_damaging(0.986) TCGA-CN-6021-01 18 55274528 55274528 C T NARS Missense_Mutation p.G280D 0.32 deleterious(0) probably_damaging(0.988) TCGA-CN-6021-01 18 56651435 56651435 C G ZNF532 Missense_Mutation p.H1215D 0.10 tolerated(0.13) possibly_damaging(0.552) TCGA-CN-6021-01 18 63511088 63511088 T C CDH7 Missense_Mutation p.I341T 0.31 deleterious(0.01) probably_damaging(0.928) TCGA-CN-6021-01 18 64235938 64235938 C G CDH19 Missense_Mutation p.D69H 0.22 deleterious(0) probably_damaging(0.981) TCGA-CN-6021-01 18 67531612 67531612 T A CD226 Missense_Mutation p.T317S 0.35 tolerated(0.09) benign(0.036) TCGA-CN-6021-01 18 70209049 70209049 T A CBLN2 Missense_Mutation p.Y116F 0.50 deleterious(0.04) benign(0.306) TCGA-CN-6021-01 18 8380391 8380391 C T PTPRM Missense_Mutation p.S1295F 0.27 deleterious(0) probably_damaging(0.994) TCGA-CN-6021-01 19 13221060 13221060 C A TRMT1 Missense_Mutation p.V311L 0.51 tolerated(0.12) benign(0.128) TCGA-CN-6021-01 19 17986870 17986870 A T SLC5A5 Missense_Mutation p.Q218L 0.19 tolerated(0.26) benign(0.063) TCGA-CN-6021-01 19 1953888 1953888 G A CSNK1G2 Intron 0.22 TCGA-CN-6021-01 19 20808036 20808036 A T ZNF626 Missense_Mutation p.L216H 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-CN-6021-01 19 22785426 22785426 C A AC011467.1 5'Flank 0.22 TCGA-CN-6021-01 19 23159353 23159353 G T ZNF728 Silent p.G262G 0.12 TCGA-CN-6021-01 19 30934689 30934689 G T ZNF536 Missense_Mutation p.G74C 0.41 tolerated_low_confidence(0.15) possibly_damaging(0.703) TCGA-CN-6021-01 19 33110271 33110271 G A ANKRD27 Silent p.S634S 0.26 TCGA-CN-6021-01 19 36278998 36278998 G T ARHGAP33 Missense_Mutation p.R1016S 0.47 deleterious_low_confidence(0.04) possibly_damaging(0.854) TCGA-CN-6021-01 19 371226 371226 G C THEG Missense_Mutation p.F244L 0.21 deleterious(0.04) benign(0.001) TCGA-CN-6021-01 19 37733492 37733492 A T ZNF383 Silent p.G118G 0.41 TCGA-CN-6021-01 19 44791701 44791701 A G ZNF235 Silent p.C629C 0.48 TCGA-CN-6021-01 19 53056767 53056767 C - ZNF808 Frame_Shift_Del p.Q201Kfs*13 0.31 TCGA-CN-6021-01 19 54257292 54257292 G - MIR527 RNA 0.21 TCGA-CN-6021-01 19 54327405 54327405 G A NLRP12 Silent p.D8D 0.19 TCGA-CN-6021-01 19 54515283 54515283 C A CACNG6 Missense_Mutation p.P208H 0.45 deleterious(0.02) probably_damaging(0.933) TCGA-CN-6021-01 19 55220579 55220579 G T AC098784.2 3'Flank 0.54 TCGA-CN-6021-01 19 55526217 55526217 C T GP6 Missense_Mutation p.V366M 0.32 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-CN-6021-01 19 56953604 56953604 G A ZNF667 Nonsense_Mutation p.Q254* 0.17 TCGA-CN-6021-01 19 57641701 57641701 G T USP29 Missense_Mutation p.S553I 0.18 tolerated(0.07) possibly_damaging(0.796) TCGA-CN-6021-01 19 5778610 5778610 G T CATSPERD Missense_Mutation p.A774S 0.56 tolerated_low_confidence(0.18) benign(0.023) TCGA-CN-6021-01 19 58187448 58187448 C G ZSCAN4 5'UTR 0.45 TCGA-CN-6021-01 19 6306747 6306747 C T ACER1 Missense_Mutation p.R258Q 0.17 tolerated(0.61) benign(0.001) TCGA-CN-6021-01 19 6693060 6693060 C G C3 Missense_Mutation p.A1089P 0.13 deleterious(0) probably_damaging(0.997) TCGA-CN-6021-01 19 8122770 8122770 G C CCL25 Missense_Mutation p.K137N 0.43 tolerated(0.1) benign(0.001) TCGA-CN-6021-01 19 8551028 8551029 - G HNRNPM Frame_Shift_Ins p.A573Gfs*33 0.15 TCGA-CN-6021-01 1 101705535 101705535 C A S1PR1 Missense_Mutation p.P332Q 0.43 tolerated(0.33) benign(0.063) TCGA-CN-6021-01 1 116939217 116939217 C A ATP1A1 Intron 0.40 TCGA-CN-6021-01 1 12939818 12939818 C T PRAMEF4 Silent p.L328L 0.40 TCGA-CN-6021-01 1 151298771 151298771 T A PI4KB 5'UTR 0.25 TCGA-CN-6021-01 1 152800095 152800095 A G LCE1A Silent p.G49G 0.32 TCGA-CN-6021-01 1 154192959 154192959 G T C1orf43 5'UTR 0.38 TCGA-CN-6021-01 1 154318808 154318808 G C ATP8B2 Missense_Mutation p.Q993H 0.31 tolerated(1) probably_damaging(0.996) TCGA-CN-6021-01 1 158624459 158624459 G T SPTA1 Missense_Mutation p.P993H 0.32 deleterious(0.01) benign(0.038) TCGA-CN-6021-01 1 158687951 158687951 C G OR6K3 5'Flank 0.33 TCGA-CN-6021-01 1 168054704 168054704 G A GPR161 3'UTR 0.50 TCGA-CN-6021-01 1 169572441 169572441 A G SELP Missense_Mutation p.C510R 0.22 deleterious(0) probably_damaging(0.972) TCGA-CN-6021-01 1 169586578 169586578 G C SELP Missense_Mutation p.R57G 0.30 deleterious(0) probably_damaging(0.985) TCGA-CN-6021-01 1 171756906 171756906 G T METTL13 Missense_Mutation p.G382V 0.30 deleterious(0) probably_damaging(0.998) TCGA-CN-6021-01 1 173907909 173907909 C A RC3H1 Missense_Mutation p.D1118Y 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.534) TCGA-CN-6021-01 1 196303004 196303004 G C KCNT2 Missense_Mutation p.P657R 0.17 tolerated(0.07) possibly_damaging(0.863) TCGA-CN-6021-01 1 196882035 196882035 C T CFHR4 Missense_Mutation p.A387V 0.26 tolerated(0.33) benign(0.008) TCGA-CN-6021-01 1 197390936 197390936 T A CRB1 Missense_Mutation p.S660T 0.33 tolerated(0.08) benign(0.437) TCGA-CN-6021-01 1 20992741 20992741 G A KIF17 Silent p.S959S 0.42 TCGA-CN-6021-01 1 216595688 216595688 A G USH2A 5'UTR 0.14 TCGA-CN-6021-01 1 240979618 240979618 T A RGS7 Missense_Mutation p.Q261L 0.26 deleterious(0.05) benign(0.092) TCGA-CN-6021-01 1 241099909 241099909 G T RGS7 Nonsense_Mutation p.Y108* 0.20 TCGA-CN-6021-01 1 248343753 248343753 G - OR2M2 Frame_Shift_Del p.G156Efs*6 0.22 TCGA-CN-6021-01 1 248569749 248569749 T C OR2T1 Missense_Mutation p.F152L 0.29 deleterious(0.05) probably_damaging(0.998) TCGA-CN-6021-01 1 248814127 248814127 T C OR2T27 Missense_Mutation p.N20S 0.12 tolerated(0.18) benign(0.001) TCGA-CN-6021-01 1 37948750 37948750 G A ZC3H12A Silent p.Q446Q 0.06 TCGA-CN-6021-01 1 57170082 57170082 G C PRKAA2 Missense_Mutation p.Q409H 0.55 deleterious(0.02) probably_damaging(0.998) TCGA-CN-6021-01 1 57399015 57399015 G A C8B Silent p.V515V 0.35 TCGA-CN-6021-01 1 71318439 71318439 G T PTGER3 3'UTR 0.29 TCGA-CN-6021-01 1 75622595 75622595 T C LHX8 Silent p.C276C 0.49 TCGA-CN-6021-01 1 75716976 75716976 G A SLC44A5 Silent p.N88N 0.35 TCGA-CN-6021-01 20 33874604 33874604 C T FAM83C Missense_Mutation p.A660T 0.24 tolerated_low_confidence(0.06) benign(0.007) TCGA-CN-6021-01 20 40068726 40068726 G A CHD6 Silent p.C1307C 0.31 TCGA-CN-6021-01 20 42195737 42195737 G A SGK2 Silent p.L82L 0.32 TCGA-CN-6021-01 20 45633631 45633631 A T EYA2 Missense_Mutation p.Y69F 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-CN-6021-01 20 61594048 61594048 C T SLC17A9 Silent p.S190S 0.35 TCGA-CN-6021-01 20 62737249 62737249 G A NPBWR2 Silent p.N312N 0.33 TCGA-CN-6021-01 21 10906807 10906807 A G TPTE 3'UTR 0.16 TCGA-CN-6021-01 21 37785298 37785298 G T CHAF1B Missense_Mutation p.R393I 0.31 tolerated(0.19) benign(0.004) TCGA-CN-6021-01 21 47985689 47985689 C T DIP2A Missense_Mutation p.H1410Y 0.15 tolerated(0.43) probably_damaging(0.932) TCGA-CN-6021-01 22 17119557 17119557 G T TPTEP1 RNA 0.28 TCGA-CN-6021-01 22 17280839 17280839 G A XKR3 Silent p.S137S 0.24 TCGA-CN-6021-01 2 103335456 103335457 - A MFSD9 Frame_Shift_Ins p.S283Ffs*23 0.19 TCGA-CN-6021-01 2 121728127 121728127 A G GLI2 Missense_Mutation p.N335S 0.20 tolerated(0.65) benign(0.002) TCGA-CN-6021-01 2 137852677 137852677 G A THSD7B Silent p.L395L 0.62 TCGA-CN-6021-01 2 1440052 1440052 C A TPO Silent p.I126I 0.32 TCGA-CN-6021-01 2 152321320 152321320 A G RIF1 Silent p.T1762T 0.24 TCGA-CN-6021-01 2 15758345 15758345 G A DDX1 Missense_Mutation p.R386K 0.24 tolerated(0.58) benign(0.026) TCGA-CN-6021-01 2 167322306 167322306 G C SCN7A Missense_Mutation p.P286A 0.64 tolerated(0.62) benign(0.345) TCGA-CN-6021-01 2 179478783 179478783 C T TTN Silent p.Q16447Q 0.73 TCGA-CN-6021-01 2 179482708 179482708 G T TTN Silent p.I15790I 0.25 TCGA-CN-6021-01 2 179483562 179483562 G T TTN Missense_Mutation p.T15572K 0.69 TCGA-CN-6021-01 2 179494132 179494132 T A TTN Missense_Mutation p.T14774S 0.63 TCGA-CN-6021-01 2 179641786 179641786 G T TTN Intron 0.63 TCGA-CN-6021-01 2 182784173 182784173 G T SSFA2 Missense_Mutation p.M1048I 0.33 tolerated(0.32) benign(0.016) TCGA-CN-6021-01 2 189864214 189864214 G T COL3A1 Missense_Mutation p.G714W 0.66 unknown(0) TCGA-CN-6021-01 2 210574637 210574637 G T MAP2 Splice_Site p.X1578_splice 0.38 TCGA-CN-6021-01 2 212522687 212522687 C A ERBB4 Intron 0.57 TCGA-CN-6021-01 2 216235068 216235068 C T FN1 Missense_Mutation p.D2268N 0.14 tolerated(0.31) benign(0.009) TCGA-CN-6021-01 2 29255814 29255814 A G FAM179A Missense_Mutation p.K676R 0.22 deleterious(0.05) benign(0.232) TCGA-CN-6021-01 2 32613839 32613839 C T BIRC6 Missense_Mutation p.L223F 0.24 benign(0.328) TCGA-CN-6021-01 2 32726872 32726872 A G BIRC6 Missense_Mutation p.T3042A 0.28 benign(0.28) TCGA-CN-6021-01 2 48600434 48600434 C A FOXN2 Missense_Mutation p.S236Y 0.32 deleterious(0.04) possibly_damaging(0.723) TCGA-CN-6021-01 2 55894127 55894127 T A PNPT1 Missense_Mutation p.Q392L 0.31 deleterious(0) possibly_damaging(0.67) TCGA-CN-6021-01 2 75107439 75107439 G T HK2 Missense_Mutation p.C438F 0.24 deleterious(0.01) probably_damaging(0.965) TCGA-CN-6021-01 2 89161063 89161063 C T IGKJ2 Missense_Mutation p.G5D 0.27 unknown(0) TCGA-CN-6021-01 2 89197014 89197014 C A IGKV5-2 Missense_Mutation p.A20E 0.46 deleterious(0.01) benign(0.213) TCGA-CN-6021-01 2 89246836 89246836 G T IGKV1-5 Missense_Mutation p.Q112K 0.22 deleterious(0.03) benign(0.109) TCGA-CN-6021-01 2 89384800 89384800 G T IGKV3-15 Missense_Mutation p.T73N 0.33 tolerated(1) benign(0.001) TCGA-CN-6021-01 3 10083359 10083359 T A FANCD2 Missense_Mutation p.S250T 0.46 tolerated(0.14) benign(0.401) TCGA-CN-6021-01 3 109050598 109050598 C A DPPA4 Missense_Mutation p.A125S 0.10 deleterious(0.03) probably_damaging(0.983) TCGA-CN-6021-01 3 122646688 122646688 C T SEMA5B Missense_Mutation p.G321S 0.52 deleterious(0.05) probably_damaging(1) TCGA-CN-6021-01 3 123451900 123451900 G T MYLK Silent p.P453P 0.47 TCGA-CN-6021-01 3 124538590 124538590 T C ITGB5 Missense_Mutation p.Y345C 0.19 deleterious(0) probably_damaging(0.997) TCGA-CN-6021-01 3 128849001 128849001 T C ISY1 Missense_Mutation p.M283V 0.19 tolerated(0.1) benign(0.281) TCGA-CN-6021-01 3 130189796 130189796 C A COL6A5 Missense_Mutation p.T2520K 0.15 tolerated(0.23) benign(0.017) TCGA-CN-6021-01 3 130327809 130327809 G T COL6A6 Splice_Site p.X1584_splice 0.13 TCGA-CN-6021-01 3 132378568 132378568 C A ACAD11 Missense_Mutation p.D10Y 0.10 deleterious(0) possibly_damaging(0.854) TCGA-CN-6021-01 3 138739052 138739052 T A PRR23B Missense_Mutation p.Q151L 0.15 deleterious(0.04) possibly_damaging(0.721) TCGA-CN-6021-01 3 1414594 1414594 A G CNTN6 Missense_Mutation p.T581A 0.39 deleterious(0) possibly_damaging(0.812) TCGA-CN-6021-01 3 14154580 14154580 G A CHCHD4 Missense_Mutation p.T92M 0.54 deleterious(0.02) probably_damaging(0.911) TCGA-CN-6021-01 3 142742816 142742816 G A U2SURP Splice_Site p.X411_splice 0.09 TCGA-CN-6021-01 3 142840860 142840860 G A CHST2 Missense_Mutation p.S401N 0.14 tolerated(0.09) possibly_damaging(0.584) TCGA-CN-6021-01 3 151082978 151082978 C T MED12L Missense_Mutation p.H1022Y 0.39 tolerated(0.1) possibly_damaging(0.78) TCGA-CN-6021-01 3 154055485 154055485 C A GPR149 3'UTR 0.51 TCGA-CN-6021-01 3 167742786 167742786 G - GOLIM4 Frame_Shift_Del p.P574Qfs*24 0.34 TCGA-CN-6021-01 3 169099256 169099256 C A MECOM Missense_Mutation p.A56S 0.07 tolerated(0.78) benign(0.281) TCGA-CN-6021-01 3 169639092 169639092 T C SAMD7 Silent p.N59N 0.19 TCGA-CN-6021-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.50 deleterious(0.04) probably_damaging(0.96) TCGA-CN-6021-01 3 178984452 178984452 C A KCNMB3 Missense_Mutation p.R16L 0.39 deleterious(0.01) possibly_damaging(0.77) TCGA-CN-6021-01 3 195597149 195597149 C A TNK2 Intron 0.67 TCGA-CN-6021-01 3 196673981 196673981 G A PIGZ 3'UTR 0.06 TCGA-CN-6021-01 3 3080618 3080618 C - CNTN4 Frame_Shift_Del p.E700Kfs*19 0.22 TCGA-CN-6021-01 3 40299739 40299739 T C MYRIP 3'UTR 0.32 TCGA-CN-6021-01 3 49755899 49755899 C T AMIGO3 Missense_Mutation p.D334N 0.19 tolerated(1) benign(0.004) TCGA-CN-6021-01 3 98073045 98073045 G T OR5K4 Silent p.A116A 0.55 TCGA-CN-6021-01 4 104060953 104060953 A T CENPE Missense_Mutation p.I2066K 0.47 benign(0.008) TCGA-CN-6021-01 4 104079563 104079563 T A CENPE Missense_Mutation p.H976L 0.73 benign(0.393) TCGA-CN-6021-01 4 104579544 104579544 C T TACR3 Missense_Mutation p.D189N 0.22 deleterious(0.03) possibly_damaging(0.61) TCGA-CN-6021-01 4 109681049 109681049 G T ETNPPL Missense_Mutation p.P64Q 0.39 deleterious(0.01) probably_damaging(0.926) TCGA-CN-6021-01 4 114278600 114278601 - A ANK2 Frame_Shift_Ins p.T2944Nfs*15 0.31 TCGA-CN-6021-01 4 121631548 121631548 T A PRDM5 Silent p.S548S 0.27 TCGA-CN-6021-01 4 123107289 123107289 G T KIAA1109 Missense_Mutation p.G153C 0.40 probably_damaging(1) TCGA-CN-6021-01 4 167656083 167656083 C T SPOCK3 Missense_Mutation p.V434I 0.45 tolerated_low_confidence(1) unknown(0) TCGA-CN-6021-01 4 170017675 170017675 T C SH3RF1 Missense_Mutation p.I888V 0.40 deleterious(0.02) benign(0.005) TCGA-CN-6021-01 4 248278 248278 A T ZNF876P RNA 0.40 TCGA-CN-6021-01 4 66230769 66230769 A G EPHA5 Silent p.P734P 0.44 TCGA-CN-6021-01 4 80247043 80247043 G T NAA11 5'UTR 0.60 TCGA-CN-6021-01 4 81124485 81124485 G A PRDM8 Silent p.A623A 0.17 TCGA-CN-6021-01 4 96761669 96761669 A G PDHA2 Missense_Mutation p.Y123C 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-CN-6021-01 5 11346593 11346593 G A CTNND2 Nonsense_Mutation p.Q507* 0.22 TCGA-CN-6021-01 5 118500343 118500343 C T DMXL1 Missense_Mutation p.T1615I 0.39 tolerated(1) benign(0.011) TCGA-CN-6021-01 5 13721172 13721172 A T DNAH5 Nonsense_Mutation p.Y4072* 0.28 TCGA-CN-6021-01 5 13845071 13845071 G T DNAH5 Silent p.R1716R 0.26 TCGA-CN-6021-01 5 140554405 140554405 G T PCDHB7 Silent p.V663V 0.23 TCGA-CN-6021-01 5 140627574 140627574 T A PCDHB15 3'UTR 0.39 TCGA-CN-6021-01 5 140719024 140719024 A T PCDHGA2 Silent p.V162V 0.48 TCGA-CN-6021-01 5 145850238 145850238 C T TCERG1 Missense_Mutation p.P480L 0.34 tolerated(0.11) unknown(0) TCGA-CN-6021-01 5 149497184 149497184 G T PDGFRB Missense_Mutation p.A1045D 0.53 tolerated(0.09) probably_damaging(0.951) TCGA-CN-6021-01 5 149677228 149677228 C T ARSI Missense_Mutation p.R420H 0.25 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 5 23510090 23510090 G T PRDM9 Silent p.V85V 0.27 TCGA-CN-6021-01 5 40853726 40853726 G A CARD6 Silent p.K764K 0.32 TCGA-CN-6021-01 5 466943 466943 G A EXOC3 Missense_Mutation p.S723N 0.18 tolerated(0.53) benign(0.002) TCGA-CN-6021-01 5 60067895 60067895 G A ELOVL7 Silent p.L30L 0.19 TCGA-CN-6021-01 5 9154604 9154604 G A SEMA5A Missense_Mutation p.R493C 0.32 deleterious(0) possibly_damaging(0.893) TCGA-CN-6021-01 5 98193970 98193970 T A CHD1 Missense_Mutation p.K1567N 0.43 tolerated(0.11) benign(0.015) TCGA-CN-6021-01 6 109802666 109802666 C G ZBTB24 Silent p.V188V 0.25 TCGA-CN-6021-01 6 112397183 112397183 C G TUBE1 Missense_Mutation p.A257P 0.40 tolerated(0.18) benign(0.118) TCGA-CN-6021-01 6 117248568 117248568 C T RFX6 Missense_Mutation p.S755F 0.27 deleterious_low_confidence(0.02) probably_damaging(0.943) TCGA-CN-6021-01 6 123102351 123102351 C A FABP7 Intron 0.32 TCGA-CN-6021-01 6 133015242 133015242 C - VNN1 Frame_Shift_Del p.D141Tfs*57 0.24 TCGA-CN-6021-01 6 133846378 133846378 C A EYA4 Missense_Mutation p.Q609K 0.33 tolerated(0.29) benign(0.002) TCGA-CN-6021-01 6 148869664 148869664 C T SASH1 Silent p.F1238F 0.24 TCGA-CN-6021-01 6 152658020 152658020 C T SYNE1 Missense_Mutation p.E4162K 0.17 probably_damaging(0.997) TCGA-CN-6021-01 6 160543205 160543205 G T SLC22A1 Missense_Mutation p.A80S 0.22 tolerated(0.99) benign(0.008) TCGA-CN-6021-01 6 162683677 162683677 C A PARK2 Nonsense_Mutation p.E98* 0.26 TCGA-CN-6021-01 6 162683729 162683729 C A PARK2 Missense_Mutation p.M80I 0.23 tolerated(0.21) benign(0.021) TCGA-CN-6021-01 6 168347424 168347424 G C MLLT4 Missense_Mutation p.K1125N 0.31 deleterious(0) possibly_damaging(0.71) TCGA-CN-6021-01 6 30879639 30879639 G C GTF2H4 Intron 0.33 TCGA-CN-6021-01 6 31730752 31730752 G A MSH5 3'Flank 0.40 TCGA-CN-6021-01 6 52101905 52101905 C A IL17F Missense_Mutation p.G106C 0.29 deleterious(0) probably_damaging(0.997) TCGA-CN-6021-01 6 69685160 69685160 T A BAI3 Missense_Mutation p.H554Q 0.21 tolerated(0.36) benign(0.008) TCGA-CN-6021-01 6 70042897 70042897 C - BAI3 Frame_Shift_Del p.G1063Vfs*3 0.31 TCGA-CN-6021-01 6 76660760 76660760 G A IMPG1 Missense_Mutation p.P448L 0.23 tolerated(1) benign(0.002) TCGA-CN-6021-01 6 88125575 88125575 C G C6ORF165 Missense_Mutation p.T152S 0.11 tolerated(0.31) benign(0.007) TCGA-CN-6021-01 6 90340371 90340371 G T ANKRD6 Missense_Mutation p.G611V 0.31 tolerated(0.1) benign(0.19) TCGA-CN-6021-01 6 97246721 97246721 A T GPR63 Missense_Mutation p.L296Q 0.22 deleterious(0.02) probably_damaging(0.988) TCGA-CN-6021-01 7 100345803 100345803 T A ZAN Missense_Mutation p.V356E 0.27 probably_damaging(0.997) TCGA-CN-6021-01 7 107638890 107638890 C T LAMB1 Silent p.E87E 0.30 TCGA-CN-6021-01 7 11676343 11676343 A T THSD7A Missense_Mutation p.C146S 0.25 deleterious(0) possibly_damaging(0.893) TCGA-CN-6021-01 7 117024803 117024803 C A ASZ1 Missense_Mutation p.A222S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6021-01 7 138946205 138946205 C T UBN2 Silent p.D371D 0.28 TCGA-CN-6021-01 7 138946371 138946371 G C UBN2 Missense_Mutation p.E427Q 0.15 tolerated(0.05) probably_damaging(0.968) TCGA-CN-6021-01 7 143417115 143417115 C T FAM115C Silent p.C321C 0.18 TCGA-CN-6021-01 7 149426299 149426299 G A KRBA1 Missense_Mutation p.E550K 0.13 deleterious(0.01) benign(0.062) TCGA-CN-6021-01 7 155596377 155596377 C T SHH Silent p.S202S 0.20 TCGA-CN-6021-01 7 18687533 18687533 G C HDAC9 Missense_Mutation p.E387D 0.36 tolerated(0.31) benign(0.268) TCGA-CN-6021-01 7 33217197 33217197 G T BBS9 Missense_Mutation p.V146L 0.34 deleterious(0.01) benign(0.108) TCGA-CN-6021-01 7 36934481 36934481 C T ELMO1 Missense_Mutation p.D527N 0.23 tolerated(0.08) probably_damaging(0.997) TCGA-CN-6021-01 7 44119312 44119312 G A POLM Missense_Mutation p.A167V 0.30 tolerated(0.2) probably_damaging(0.999) TCGA-CN-6021-01 7 44733439 44733439 G T OGDH Missense_Mutation p.D451Y 0.35 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 7 48314857 48314857 C G ABCA13 Missense_Mutation p.S1865C 0.54 possibly_damaging(0.784) TCGA-CN-6021-01 7 75167467 75167467 C A HIP1 3'UTR 0.26 TCGA-CN-6021-01 7 79082487 79082487 G T MAGI2 Silent p.G50G 0.29 TCGA-CN-6021-01 7 81693654 81693654 C A CACNA2D1 Missense_Mutation p.A249S 0.21 tolerated(1) possibly_damaging(0.621) TCGA-CN-6021-01 7 82585441 82585441 G A PCLO Nonsense_Mutation p.R1610* 0.13 TCGA-CN-6021-01 7 92147348 92147348 T C PEX1 Missense_Mutation p.I161V 0.29 tolerated(0.36) benign(0.002) TCGA-CN-6021-01 7 94293079 94293079 C G PEG10 Missense_Mutation p.P71A 0.33 tolerated_low_confidence(0.96) benign(0) TCGA-CN-6021-01 7 96303092 96303092 T A SHFM1 Missense_Mutation p.S84C 0.27 deleterious_low_confidence(0) unknown(0) TCGA-CN-6021-01 8 110980809 110980809 C A KCNV1 Missense_Mutation p.M337I 0.30 deleterious(0.04) benign(0.014) TCGA-CN-6021-01 8 113318352 113318352 G T CSMD3 Missense_Mutation p.T2652K 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-CN-6021-01 8 17159737 17159737 A T MTMR7 Missense_Mutation p.S516T 0.31 tolerated(0.17) probably_damaging(0.952) TCGA-CN-6021-01 8 21973246 21973246 C T HR Silent p.K1179K 0.17 TCGA-CN-6021-01 8 24168892 24168892 G T ADAM28 Nonsense_Mutation p.G109* 0.22 TCGA-CN-6021-01 8 26365761 26365761 T G PNMA2 Missense_Mutation p.S171R 0.17 tolerated(0.18) benign(0.444) TCGA-CN-6021-01 8 26721956 26721956 C T ADRA1A Silent p.Q177Q 0.21 TCGA-CN-6021-01 8 35579781 35579781 G T UNC5D Missense_Mutation p.V391L 0.27 tolerated(0.21) benign(0.004) TCGA-CN-6021-01 8 51571220 51571220 C A SNTG1 Silent p.L345L 0.14 TCGA-CN-6021-01 8 73848928 73848928 C T KCNB2 Silent p.N446N 0.31 TCGA-CN-6021-01 8 88886082 88886082 C A DCAF4L2 Missense_Mutation p.A40S 0.40 tolerated(0.59) benign(0.002) TCGA-CN-6021-01 8 92406489 92406489 T C SLC26A7 Missense_Mutation p.M660T 0.35 benign(0.092) TCGA-CN-6021-01 8 99961349 99961349 G T OSR2 Missense_Mutation p.G57W 0.24 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-CN-6021-01 9 120470933 120470933 C T TLR4 Silent p.S62S 0.11 TCGA-CN-6021-01 9 120474751 120474751 G T TLR4 Missense_Mutation p.Q115H 0.54 deleterious(0.03) benign(0.063) TCGA-CN-6021-01 9 122004443 122004443 G T BRINP1 Nonsense_Mutation p.S154* 0.66 TCGA-CN-6021-01 9 132658199 132658199 C T FNBP1 Nonsense_Mutation p.W588* 0.44 TCGA-CN-6021-01 9 139413070 139413072 AGA - NOTCH1 In_Frame_Del p.F357del 0.53 TCGA-CN-6021-01 9 33385406 33385406 C - AQP7 Intron 0.18 TCGA-CN-6021-01 9 35794092 35794092 G T NPR2 Missense_Mutation p.A289S 0.50 deleterious(0) possibly_damaging(0.718) TCGA-CN-6021-01 9 77411725 77411725 G A TRPM6 Nonsense_Mutation p.Q775* 0.16 TCGA-CN-6021-01 9 79324138 79324139 - TGACTGTTGCAG PRUNE2 In_Frame_Ins p.Q1017_S1018insLQQS 0.13 TCGA-CN-6021-01 9 96209968 96209968 G A FAM120AOS Silent p.S232S 0.12 TCGA-CN-6021-01 X 100486665 100486665 C T DRP2 Missense_Mutation p.P10L 0.27 tolerated_low_confidence(0.15) benign(0.001) TCGA-CN-6021-01 X 100911056 100911056 C G ARMCX2 Missense_Mutation p.V507L 0.07 deleterious(0.04) probably_damaging(0.965) TCGA-CN-6021-01 X 102632365 102632365 T A NGFRAP1 Intron 0.33 TCGA-CN-6021-01 X 107169922 107169922 C A MID2 Nonsense_Mutation p.Y609* 0.23 TCGA-CN-6021-01 X 107802347 107802347 A C COL4A5 Silent p.P65P 0.18 TCGA-CN-6021-01 X 11139818 11139818 G T HCCS Missense_Mutation p.G232V 0.25 deleterious(0) probably_damaging(0.997) TCGA-CN-6021-01 X 117079426 117079426 T C KLHL13 Missense_Mutation p.S74G 0.28 tolerated(0.12) benign(0.054) TCGA-CN-6021-01 X 117788710 117788710 C G DOCK11 Missense_Mutation p.T1614S 0.29 deleterious(0) benign(0.163) TCGA-CN-6021-01 X 118221772 118221772 G T KIAA1210 Silent p.R1141R 0.19 TCGA-CN-6021-01 X 119077487 119077487 G T NKAP Missense_Mutation p.P28T 0.34 deleterious(0.03) probably_damaging(0.996) TCGA-CN-6021-01 X 122866840 122866840 C A THOC2 Missense_Mutation p.E11D 0.23 tolerated(0.54) benign(0.01) TCGA-CN-6021-01 X 128896688 128896688 A T XPNPEP2 Missense_Mutation p.D561V 0.31 deleterious(0) possibly_damaging(0.742) TCGA-CN-6021-01 X 129053151 129053151 G T UTP14A Missense_Mutation p.A180S 0.27 deleterious(0.01) possibly_damaging(0.582) TCGA-CN-6021-01 X 129518602 129518602 G C GPR119 Missense_Mutation p.L274V 0.32 tolerated(0.13) benign(0.256) TCGA-CN-6021-01 X 131207017 131207017 G C MST4 Missense_Mutation p.R374S 0.38 tolerated_low_confidence(0.41) benign(0.034) TCGA-CN-6021-01 X 131208307 131208307 G C MST4 3'UTR 0.26 TCGA-CN-6021-01 X 132351548 132351548 A T TFDP3 Missense_Mutation p.L247Q 0.22 tolerated(0.11) benign(0) TCGA-CN-6021-01 X 135291444 135291444 C A FHL1 Missense_Mutation p.A244D 0.17 tolerated(0.38) benign(0.269) TCGA-CN-6021-01 X 135453552 135453552 G C GPR112 Missense_Mutation p.E2488Q 0.27 deleterious(0) possibly_damaging(0.737) TCGA-CN-6021-01 X 150789407 150789407 G C PASD1 Missense_Mutation p.E71D 0.24 tolerated(0.53) benign(0.028) TCGA-CN-6021-01 X 151560705 151560705 C A GABRA3 Intron 0.23 TCGA-CN-6021-01 X 152814263 152814263 C A ATP2B3 Missense_Mutation p.P430Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-CN-6021-01 X 153994589 153994589 G T DKC1 Missense_Mutation p.S121I 0.28 deleterious(0) probably_damaging(0.997) TCGA-CN-6021-01 X 154493700 154493700 C T RAB39B 5'UTR 0.44 TCGA-CN-6021-01 X 15497928 15497928 G T PIR Missense_Mutation p.P38Q 0.20 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 X 18220019 18220019 C T BEND2 Missense_Mutation p.E317K 0.26 tolerated(0.1) benign(0.094) TCGA-CN-6021-01 X 18911701 18911701 C A PHKA2 Missense_Mutation p.A1204S 0.28 deleterious(0) benign(0.087) TCGA-CN-6021-01 X 21674708 21674708 G T KLHL34 Missense_Mutation p.P400Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-CN-6021-01 X 21675186 21675186 C A KLHL34 Missense_Mutation p.G241C 0.28 deleterious(0.01) probably_damaging(0.912) TCGA-CN-6021-01 X 21995233 21995233 C A SMS Missense_Mutation p.D128E 0.29 deleterious(0) probably_damaging(0.946) TCGA-CN-6021-01 X 30254265 30254265 T C MAGEB3 Missense_Mutation p.V75A 0.36 tolerated(1) benign(0.01) TCGA-CN-6021-01 X 31165577 31165577 G T DMD Missense_Mutation p.P3538T 0.26 possibly_damaging(0.803) TCGA-CN-6021-01 X 3235195 3235195 G T MXRA5 Missense_Mutation p.P2176Q 0.46 deleterious(0) probably_damaging(0.997) TCGA-CN-6021-01 X 37587755 37587755 G - XK 3'UTR 0.21 TCGA-CN-6021-01 X 43817843 43817843 C T NDP Missense_Mutation p.V17M 0.41 tolerated_low_confidence(0.1) benign(0.068) TCGA-CN-6021-01 X 53114157 53114157 C - TSPYL2 Frame_Shift_Del p.P341Qfs*56 0.31 TCGA-CN-6021-01 X 63412151 63412151 C A AMER1 Missense_Mutation p.S339I 0.41 deleterious(0) probably_damaging(0.998) TCGA-CN-6021-01 X 69699025 69699025 A T DLG3 Silent p.I477I 0.25 TCGA-CN-6021-01 X 75648802 75648802 C T MAGEE1 Missense_Mutation p.P160L 0.21 tolerated_low_confidence(0.59) benign(0.028) TCGA-CN-6021-01 X 79286015 79286015 C T TBX22 Missense_Mutation p.S323F 0.35 tolerated(0.08) benign(0.086) TCGA-CN-6021-01 X 79698469 79698469 G T FAM46D Missense_Mutation p.W144L 0.32 deleterious(0) probably_damaging(0.99) TCGA-CN-6021-01 X 79947378 79947378 G A BRWD3 Missense_Mutation p.S1142F 0.31 deleterious(0) possibly_damaging(0.851) TCGA-CN-6021-01 X 80532534 80532534 G T SH3BGRL Nonsense_Mutation p.G33* 0.22 TCGA-CN-6021-01 X 85404039 85404039 C G DACH2 Missense_Mutation p.P139A 0.21 deleterious(0) possibly_damaging(0.563) TCGA-CN-6021-01 X 85994870 85994870 C A DACH2 Missense_Mutation p.H409N 0.28 tolerated(0.36) benign(0.017) TCGA-CN-6021-01 X 86067962 86067962 T G DACH2 Missense_Mutation p.F448L 0.36 tolerated(0.14) benign(0.012) TCGA-CN-6021-01 X 92928013 92928013 C T NAP1L3 Silent p.V97V 0.33 TCGA-CN-6021-01 X 96220178 96220178 G T DIAPH2 Missense_Mutation p.L674F 0.24 deleterious(0) probably_damaging(1) TCGA-CN-6021-01 X 9707605 9707605 G T GPR143 Missense_Mutation p.P347H 0.36 deleterious_low_confidence(0.04) probably_damaging(0.93) TCGA-CN-6022-01 10 101474430 101474430 G C COX15 Missense_Mutation p.L383V 0.12 deleterious(0.04) possibly_damaging(0.665) TCGA-CN-6022-01 10 102247522 102247522 C T SEC31B Missense_Mutation p.E1131K 0.11 deleterious(0.03) benign(0.049) TCGA-CN-6022-01 10 126716163 126716163 G T CTBP2 Silent p.R56R 0.10 TCGA-CN-6022-01 10 22690177 22690177 C G SPAG6 Missense_Mutation p.L429V 0.22 deleterious(0.03) benign(0.213) TCGA-CN-6022-01 10 88425489 88425489 G T OPN4 Missense_Mutation p.S484I 0.29 tolerated_low_confidence(0.09) benign(0.1) TCGA-CN-6022-01 11 56057964 56057964 T C OR8H1 Missense_Mutation p.Y192C 0.16 deleterious(0.02) possibly_damaging(0.762) TCGA-CN-6022-01 12 111758444 111758444 G A CUX2 Silent p.K877K 0.21 TCGA-CN-6022-01 12 112578685 112578685 C G TRAFD1 Silent p.L100L 0.22 TCGA-CN-6022-01 12 121605311 121605311 G A P2RX7 Silent p.E255E 0.16 TCGA-CN-6022-01 12 124268604 124268604 C T DNAH10 Silent p.I309I 0.39 TCGA-CN-6022-01 12 124285882 124285882 G A DNAH10 Silent p.T721T 0.30 TCGA-CN-6022-01 12 130827639 130827639 G A PIWIL1 Silent p.K61K 0.38 TCGA-CN-6022-01 12 49438545 49438545 C A KMT2D Nonsense_Mutation p.E1649* 0.26 TCGA-CN-6022-01 12 72666978 72666978 C T TRHDE Silent p.R140R 0.22 TCGA-CN-6022-01 13 108861732 108861732 T A LIG4 Nonsense_Mutation p.K629* 0.29 TCGA-CN-6022-01 13 110829000 110829000 C G COL4A1 Missense_Mutation p.G981R 0.24 benign(0.271) TCGA-CN-6022-01 13 50204602 50204602 A G ARL11 Missense_Mutation p.R7G 0.11 deleterious(0) benign(0.039) TCGA-CN-6022-01 14 105457937 105457937 G A C14orf79 Missense_Mutation p.G227R 0.35 deleterious(0) probably_damaging(0.997) TCGA-CN-6022-01 14 70175519 70175519 G C KIAA0247 Missense_Mutation p.R195T 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-CN-6022-01 15 29390768 29390768 G T APBA2 Missense_Mutation p.A443S 0.10 deleterious(0.02) possibly_damaging(0.525) TCGA-CN-6022-01 15 32921801 32921801 C T ARHGAP11A Silent p.L315L 0.09 TCGA-CN-6022-01 15 74738533 74738533 G A UBL7 Silent p.D347D 0.16 TCGA-CN-6022-01 15 85164982 85164982 T C ZSCAN2 Missense_Mutation p.V519A 0.16 tolerated(0.69) benign(0.01) TCGA-CN-6022-01 15 86312285 86312285 C T KLHL25 Missense_Mutation p.E253K 0.22 tolerated(0.11) benign(0.137) TCGA-CN-6022-01 16 426289 426289 C T TMEM8A Silent p.T357T 0.29 TCGA-CN-6022-01 16 57994804 57994804 C T CNGB1 Silent p.L158L 0.13 TCGA-CN-6022-01 16 68011733 68011733 C G DPEP3 Splice_Site p.X278_splice 0.11 TCGA-CN-6022-01 16 70926425 70926425 C A HYDIN Missense_Mutation p.V3086L 0.13 possibly_damaging(0.753) TCGA-CN-6022-01 16 9857175 9857175 G A GRIN2A Missense_Mutation p.A1409V 0.30 tolerated(0.11) benign(0.018) TCGA-CN-6022-01 17 3661071 3661071 C G ITGAE Missense_Mutation p.E317Q 0.12 tolerated(0.59) benign(0.02) TCGA-CN-6022-01 17 56166759 56166759 T C DYNLL2 3'UTR 0.33 TCGA-CN-6022-01 17 67092867 67092867 C T ABCA6 Missense_Mutation p.V1066I 0.22 tolerated(1) benign(0.015) TCGA-CN-6022-01 17 72927021 72927021 G T OTOP2 Missense_Mutation p.G431W 0.06 deleterious(0.02) possibly_damaging(0.729) TCGA-CN-6022-01 17 74287585 74287585 G A QRICH2 Nonsense_Mutation p.Q909* 0.10 TCGA-CN-6022-01 17 7577498 7577498 C T TP53 Splice_Site p.X261_splice 0.23 TCGA-CN-6022-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.30 deleterious(0) probably_damaging(1) TCGA-CN-6022-01 18 12697408 12697408 C T CEP76 Splice_Site p.X174_splice 0.25 TCGA-CN-6022-01 18 18625307 18625307 G T ROCK1 Missense_Mutation p.T179N 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-CN-6022-01 19 14211687 14211687 C T PRKACA Missense_Mutation p.V124M 0.16 deleterious(0) probably_damaging(0.958) TCGA-CN-6022-01 19 39010003 39010003 G T RYR1 Missense_Mutation p.G3390C 0.20 benign(0.326) TCGA-CN-6022-01 19 41782195 41782195 G A HNRNPUL1 Missense_Mutation p.E260K 0.12 deleterious(0) unknown(0) TCGA-CN-6022-01 19 49631304 49631304 G A PPFIA3 Silent p.L58L 0.42 TCGA-CN-6022-01 1 161681071 161681071 G C FCRLA Missense_Mutation p.W125C 0.11 deleterious(0) probably_damaging(0.998) TCGA-CN-6022-01 1 198713307 198713307 C T PTPRC Missense_Mutation p.P941L 0.14 deleterious(0.02) benign(0.439) TCGA-CN-6022-01 1 240601464 240601464 T A FMN2 Missense_Mutation p.F1672I 0.12 probably_damaging(0.987) TCGA-CN-6022-01 1 248129300 248129300 C G OR2AK2 Missense_Mutation p.L223V 0.33 tolerated(0.16) possibly_damaging(0.841) TCGA-CN-6022-01 1 36926866 36926866 T C MRPS15 Missense_Mutation p.K100R 0.33 tolerated(0.22) benign(0.004) TCGA-CN-6022-01 1 38187398 38187398 C T EPHA10 Missense_Mutation p.E694K 0.16 deleterious(0.02) probably_damaging(0.978) TCGA-CN-6022-01 1 39317431 39317431 T C RRAGC Splice_Site p.X253_splice 0.17 TCGA-CN-6022-01 1 54269617 54269617 G C NDC1 Missense_Mutation p.F350L 0.16 deleterious(0) probably_damaging(0.991) TCGA-CN-6022-01 1 59247690 59247690 C G JUN 3'UTR 0.38 TCGA-CN-6022-01 1 77510198 77510198 C T ST6GALNAC5 Missense_Mutation p.L191F 0.13 probably_damaging(0.996) TCGA-CN-6022-01 1 93691976 93691976 T G CCDC18 Missense_Mutation p.F807L 0.09 deleterious(0) possibly_damaging(0.779) TCGA-CN-6022-01 20 18022341 18022341 C A OVOL2 Silent p.S116S 0.26 TCGA-CN-6022-01 21 47635094 47635094 C T LSS Silent p.P337P 0.10 TCGA-CN-6022-01 21 47863774 47863774 C G PCNT Missense_Mutation p.P3251R 0.33 probably_damaging(0.937) TCGA-CN-6022-01 22 32756682 32756682 G A RFPL3 Missense_Mutation p.V273I 0.24 tolerated(1) benign(0.2) TCGA-CN-6022-01 2 109383270 109383270 C T RANBP2 Missense_Mutation p.T2092M 0.15 deleterious(0.01) probably_damaging(1) TCGA-CN-6022-01 2 159517716 159517716 C T PKP4 Intron 0.30 TCGA-CN-6022-01 2 24929930 24929930 C A NCOA1 Silent p.R531R 0.15 TCGA-CN-6022-01 2 54849492 54849492 C T SPTBN1 Missense_Mutation p.A311V 0.09 deleterious(0) probably_damaging(0.934) TCGA-CN-6022-01 3 113955725 113955725 C T ZNF80 Missense_Mutation p.R66Q 0.12 tolerated(0.52) benign(0.014) TCGA-CN-6022-01 3 129278515 129278515 C T PLXND1 Missense_Mutation p.E1749K 0.23 deleterious(0.04) probably_damaging(0.981) TCGA-CN-6022-01 3 182841888 182841888 G C LAMP3 Missense_Mutation p.S411C 0.34 tolerated(0.06) benign(0.078) TCGA-CN-6022-01 3 194063384 194063384 G A CPN2 Silent p.A16A 0.08 TCGA-CN-6022-01 4 103527776 103527776 G A NFKB1 Missense_Mutation p.E626K 0.13 tolerated(0.44) benign(0.197) TCGA-CN-6022-01 4 187088346 187088346 G T FAM149A Silent p.T435T 0.16 TCGA-CN-6022-01 4 3432594 3432594 G A RGS12 Silent p.L1342L 0.11 TCGA-CN-6022-01 4 83891502 83891502 G A LIN54 Missense_Mutation p.S310L 0.14 deleterious(0.03) benign(0.115) TCGA-CN-6022-01 4 982693 982693 G A SLC26A1 Silent p.L678L 0.21 TCGA-CN-6022-01 5 138145779 138145780 - GTG CTNNA1 In_Frame_Ins p.V119dup 0.15 TCGA-CN-6022-01 5 56212663 56212663 T G SETD9 Silent p.L278L 0.33 TCGA-CN-6022-01 5 59982801 59982801 C G DEPDC1B Missense_Mutation p.R101P 0.10 deleterious(0.02) benign(0.302) TCGA-CN-6022-01 5 68680680 68680680 C T RAD17 Silent p.L200L 0.18 TCGA-CN-6022-01 5 96237207 96237207 C T ERAP2 Intron 0.16 TCGA-CN-6022-01 6 139101113 139101113 C A CCDC28A Missense_Mutation p.Q195K 0.14 tolerated(0.08) possibly_damaging(0.815) TCGA-CN-6022-01 6 149919454 149919454 A C KATNA1 Missense_Mutation p.I307M 0.26 tolerated(0.05) probably_damaging(1) TCGA-CN-6022-01 6 158483059 158483059 G A SYNJ2 Silent p.T330T 0.12 TCGA-CN-6022-01 6 161160163 161160163 G A PLG Silent p.P647P 0.29 TCGA-CN-6022-01 6 32154198 32154198 C T PBX2 Silent p.T418T 0.08 TCGA-CN-6022-01 6 32363864 32363864 C G BTNL2 Missense_Mutation p.E344Q 0.10 tolerated(0.19) probably_damaging(0.968) TCGA-CN-6022-01 6 33283477 33283477 G A ZBTB22 Missense_Mutation p.S406F 0.13 tolerated(0.06) possibly_damaging(0.854) TCGA-CN-6022-01 6 35213722 35213722 A G SCUBE3 Silent p.S867S 0.29 TCGA-CN-6022-01 6 39387750 39387750 C G KIF6 Missense_Mutation p.S595T 0.10 tolerated(0.25) benign(0.007) TCGA-CN-6022-01 6 52303383 52303383 C T EFHC1 Silent p.F189F 0.09 TCGA-CN-6022-01 6 87968682 87968682 G T ZNF292 Missense_Mutation p.G1779C 0.19 deleterious_low_confidence(0.05) benign(0.008) TCGA-CN-6022-01 7 102098318 102098318 C G ALKBH4 Silent p.G144G 0.13 TCGA-CN-6022-01 7 148483659 148483659 G A CUL1 Missense_Mutation p.E439K 0.33 deleterious(0) probably_damaging(0.946) TCGA-CN-6022-01 8 142441135 142441135 C T PTP4A3 Silent p.C171C 0.15 TCGA-CN-6022-01 8 77616610 77616610 T G ZFHX4 Missense_Mutation p.M96R 0.34 benign(0.092) TCGA-CN-6022-01 9 113148250 113148250 G A SVEP1 Silent p.L3389L 0.07 TCGA-CN-6022-01 9 34514718 34514718 C A DNAI1 Missense_Mutation p.A600E 0.21 deleterious(0) probably_damaging(0.918) TCGA-CN-6022-01 X 21875473 21875473 G C YY2 Missense_Mutation p.A291P 0.39 deleterious(0) probably_damaging(0.97) TCGA-CN-6022-01 X 7868777 7868777 C T PNPLA4 Missense_Mutation p.G238S 0.33 deleterious(0) probably_damaging(1) TCGA-CN-6023-01 10 106027062 106027062 G A GSTO1 Missense_Mutation p.D209N 0.30 deleterious(0.02) benign(0.367) TCGA-CN-6023-01 10 112724421 112724421 C G SHOC2 Nonsense_Mutation p.S102* 0.19 TCGA-CN-6023-01 10 22618334 22618334 C A COMMD3-BMI1 Missense_Mutation p.P425T 0.24 deleterious_low_confidence(0.02) benign(0.122) TCGA-CN-6023-01 10 27326225 27326225 T A ANKRD26 Missense_Mutation p.R863W 0.26 deleterious(0.03) benign(0.15) TCGA-CN-6023-01 10 43312844 43312846 AAG - BMS1 In_Frame_Del p.K829del 0.10 TCGA-CN-6023-01 10 95069804 95069804 G A MYOF Silent p.F2040F 0.14 TCGA-CN-6023-01 11 4626315 4626315 C G TRIM68 Missense_Mutation p.E140D 0.15 tolerated(0.29) benign(0.002) TCGA-CN-6023-01 11 60970995 60970995 C T PGA3 5'UTR 0.16 TCGA-CN-6023-01 12 10560266 10560266 T C KLRC4 Missense_Mutation p.I155V 0.34 tolerated(0.29) benign(0) TCGA-CN-6023-01 12 49428364 49428364 C T KMT2D Splice_Site p.X3480_splice 0.31 TCGA-CN-6023-01 12 49934900 49934900 C T KCNH3 Silent p.L99L 0.10 TCGA-CN-6023-01 12 50036290 50036290 C T FMNL3 3'UTR 0.38 TCGA-CN-6023-01 12 56504208 56504208 G A PA2G4 Missense_Mutation p.E219K 0.11 deleterious(0.01) probably_damaging(0.93) TCGA-CN-6023-01 12 72056924 72056924 C A ZFC3H1 Missense_Mutation p.R156L 0.10 tolerated(0.18) benign(0.25) TCGA-CN-6023-01 12 80623099 80623099 C G OTOGL Missense_Mutation p.F175L 0.10 deleterious(0.02) probably_damaging(0.96) TCGA-CN-6023-01 13 33017607 33017607 T A N4BP2L2 Missense_Mutation p.Y356F 0.25 tolerated(0.6) benign(0.187) TCGA-CN-6023-01 13 77751900 77751900 C T MYCBP2 Missense_Mutation p.E1737K 0.58 probably_damaging(0.996) TCGA-CN-6023-01 14 105946043 105946043 G C CRIP2 3'Flank 0.33 TCGA-CN-6023-01 14 21543067 21543067 G T ARHGEF40 Missense_Mutation p.R393L 0.30 tolerated_low_confidence(0.16) benign(0.065) TCGA-CN-6023-01 14 42356226 42356226 A G LRFN5 Missense_Mutation p.N133S 0.25 deleterious(0.03) probably_damaging(1) TCGA-CN-6023-01 14 59798071 59798071 C G DAAM1 Missense_Mutation p.L569V 0.30 tolerated(0.52) unknown(0) TCGA-CN-6023-01 14 65242099 65242099 C A SPTB Missense_Mutation p.G1529V 0.55 tolerated(0.12) probably_damaging(0.999) TCGA-CN-6023-01 14 65544653 65544653 C G MAX Missense_Mutation p.Q91H 0.36 deleterious(0.01) benign(0.321) TCGA-CN-6023-01 14 93650676 93650676 G T MOAP1 5'UTR 0.54 TCGA-CN-6023-01 15 25332820 25332820 G T SNORD116-20 RNA 0.15 TCGA-CN-6023-01 15 34628812 34628812 C G SLC12A6 Missense_Mutation p.D24H 0.39 deleterious_low_confidence(0) possibly_damaging(0.769) TCGA-CN-6023-01 15 42003533 42003533 C G MGA Missense_Mutation p.L1024V 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-CN-6023-01 16 20362149 20362149 G A UMOD Intron 0.40 TCGA-CN-6023-01 16 23444886 23444886 G C COG7 Missense_Mutation p.Q264E 0.07 tolerated(0.25) benign(0.008) TCGA-CN-6023-01 16 27472703 27472703 C T GTF3C1 Missense_Mutation p.E2100K 0.19 deleterious(0.04) benign(0.01) TCGA-CN-6023-01 16 2905798 2905798 C T PRSS22 Silent p.G112G 0.17 TCGA-CN-6023-01 16 30537124 30537124 C T ZNF768 Missense_Mutation p.E113K 0.17 deleterious_low_confidence(0.01) benign(0.033) TCGA-CN-6023-01 16 30537662 30537662 C G ZNF768 Missense_Mutation p.E25Q 0.15 tolerated_low_confidence(0.09) benign(0.003) TCGA-CN-6023-01 16 30537672 30537672 C T ZNF768 Missense_Mutation p.M21I 0.14 tolerated_low_confidence(0.13) benign(0) TCGA-CN-6023-01 16 3406752 3406752 G A OR2C1 Missense_Mutation p.G271D 0.18 deleterious(0.03) benign(0.043) TCGA-CN-6023-01 16 55523685 55523685 A G MMP2 Missense_Mutation p.T377A 0.13 deleterious(0.01) benign(0.05) TCGA-CN-6023-01 16 71894083 71894088 CATTTT - ZNF821 In_Frame_Del p.K358_M359del 0.23 TCGA-CN-6023-01 16 80583380 80583380 G C DYNLRB2 Splice_Site p.X27_splice 0.16 TCGA-CN-6023-01 17 2604528 2604528 C T CLUH Missense_Mutation p.A273T 0.22 tolerated(0.06) benign(0.063) TCGA-CN-6023-01 17 27248731 27248731 C A PHF12 Missense_Mutation p.V271F 0.29 deleterious(0) possibly_damaging(0.732) TCGA-CN-6023-01 17 31094761 31094761 T C MYO1D Missense_Mutation p.N242D 0.38 tolerated(0.48) benign(0.012) TCGA-CN-6023-01 17 33353416 33353416 G C RFFL Missense_Mutation p.H53D 0.16 tolerated(0.15) possibly_damaging(0.772) TCGA-CN-6023-01 17 34340266 34340266 C T CCL23 Missense_Mutation p.D129N 0.14 tolerated(0.88) benign(0.019) TCGA-CN-6023-01 17 4455195 4455195 C T MYBBP1A Missense_Mutation p.E335K 0.07 deleterious(0.01) possibly_damaging(0.571) TCGA-CN-6023-01 17 4789867 4789867 C T MINK1 Missense_Mutation p.R299C 0.30 deleterious(0) possibly_damaging(0.736) TCGA-CN-6023-01 17 62248511 62248511 C G TEX2 Missense_Mutation p.V881L 0.12 tolerated(0.35) benign(0.006) TCGA-CN-6023-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.41 deleterious(0) probably_damaging(1) TCGA-CN-6023-01 17 80007651 80007651 C T RFNG Missense_Mutation p.V244M 0.30 deleterious(0) probably_damaging(0.918) TCGA-CN-6023-01 17 80129690 80129690 T C CCDC57 Missense_Mutation p.K590R 0.21 deleterious(0) probably_damaging(1) TCGA-CN-6023-01 18 12817283 12817283 G A PTPN2 Missense_Mutation p.L193F 0.22 deleterious(0.02) benign(0.423) TCGA-CN-6023-01 18 19154819 19154819 T A ESCO1 5'UTR 0.21 TCGA-CN-6023-01 18 24497019 24497019 C A CHST9 Missense_Mutation p.R179M 0.16 deleterious(0) probably_damaging(0.956) TCGA-CN-6023-01 19 39329127 39329127 C T HNRNPL Silent p.E489E 0.18 TCGA-CN-6023-01 19 39399378 39399380 ACG - NFKBIB In_Frame_Del p.D328del 0.33 TCGA-CN-6023-01 19 40579942 40579942 G C ZNF780A 3'UTR 0.27 TCGA-CN-6023-01 19 41807560 41807560 C T HNRNPUL1 Silent p.T546T 0.13 TCGA-CN-6023-01 1 10042404 10042404 C T NMNAT1 Missense_Mutation p.S162F 0.22 deleterious(0) probably_damaging(1) TCGA-CN-6023-01 1 119683078 119683078 T C WARS2 Intron 0.17 TCGA-CN-6023-01 1 202915728 202915728 C T ADIPOR1 Missense_Mutation p.G90E 0.16 tolerated(0.09) benign(0.008) TCGA-CN-6023-01 1 228557643 228557643 C G OBSCN Missense_Mutation p.S7613R 0.55 probably_damaging(0.988) TCGA-CN-6023-01 1 228557645 228557645 T G OBSCN Missense_Mutation p.L7614R 0.54 probably_damaging(0.996) TCGA-CN-6023-01 1 35476586 35476586 G A ZMYM6 Nonsense_Mutation p.Q372* 0.23 TCGA-CN-6023-01 1 59147830 59147830 G A MYSM1 Silent p.L296L 0.10 TCGA-CN-6023-01 1 982024 982024 G A AGRN Silent p.V1053V 0.52 TCGA-CN-6023-01 20 18511339 18511339 G T SEC23B Missense_Mutation p.M375I 0.08 deleterious(0.02) benign(0.012) TCGA-CN-6023-01 20 35293461 35293461 T G NDRG3 Silent p.A266A 0.36 TCGA-CN-6023-01 20 35757571 35757571 C G MROH8 Splice_Site p.X577_splice 0.42 TCGA-CN-6023-01 20 40040857 40040857 G C CHD6 Missense_Mutation p.P2393R 0.13 deleterious(0) probably_damaging(0.951) TCGA-CN-6023-01 20 61869950 61869950 C G BIRC7 Silent p.A187A 0.04 TCGA-CN-6023-01 20 62187012 62187012 G A C20orf195 5'UTR 0.19 TCGA-CN-6023-01 21 39580540 39580540 T G DSCR10 RNA 0.15 TCGA-CN-6023-01 2 103321047 103321047 G C SLC9A2 Missense_Mutation p.E630D 0.13 tolerated(0.06) probably_damaging(0.99) TCGA-CN-6023-01 2 109088215 109088215 G C GCC2 Missense_Mutation p.E810D 0.25 tolerated(0.07) benign(0.079) TCGA-CN-6023-01 2 160803296 160803296 T C PLA2R1 Intron 0.31 TCGA-CN-6023-01 2 179459274 179459275 - T TTN Frame_Shift_Ins p.I19316Nfs*3 0.30 TCGA-CN-6023-01 2 18767631 18767631 C T NT5C1B Silent p.K109K 0.11 TCGA-CN-6023-01 2 26438045 26438045 C T HADHA Splice_Site p.X226_splice 0.17 TCGA-CN-6023-01 2 29456500 29456500 A T ALK Silent p.R806R 0.27 TCGA-CN-6023-01 2 73717132 73717132 A G ALMS1 Silent p.E2681E 0.14 TCGA-CN-6023-01 2 99726007 99726007 T C TSGA10 Intron 0.32 TCGA-CN-6023-01 3 112709801 112709801 A G GTPBP8 5'UTR 0.20 TCGA-CN-6023-01 3 137843343 137843343 G T A4GNT Silent p.P262P 0.13 TCGA-CN-6023-01 3 139067116 139067116 G A MRPS22 Missense_Mutation p.E152K 0.34 deleterious(0) probably_damaging(0.967) TCGA-CN-6023-01 3 142168296 142168296 T C ATR Missense_Mutation p.Y2637C 0.14 deleterious(0) probably_damaging(1) TCGA-CN-6023-01 3 164786949 164786949 G A SI Missense_Mutation p.P97L 0.10 deleterious(0.01) possibly_damaging(0.796) TCGA-CN-6023-01 3 178984547 178984547 C T KCNMB3 5'UTR 0.11 TCGA-CN-6023-01 3 187003846 187003846 T A MASP1 Splice_Site p.X2_splice 0.25 TCGA-CN-6023-01 3 193175175 193175175 G C ATP13A4 Missense_Mutation p.A585G 0.07 tolerated(0.08) benign(0.328) TCGA-CN-6023-01 3 197348634 197348634 G A AC024560.3 RNA 0.32 TCGA-CN-6023-01 3 197585726 197585726 G C LRCH3 Missense_Mutation p.V556L 0.23 tolerated(0.35) benign(0.059) TCGA-CN-6023-01 3 44488834 44488834 G C ZNF445 Missense_Mutation p.L777V 0.51 deleterious(0) unknown(0) TCGA-CN-6023-01 3 49293597 49293597 A G CCDC36 Missense_Mutation p.N223D 0.38 tolerated(0.37) benign(0.004) TCGA-CN-6023-01 3 8579047 8579047 A G LMCD1 Missense_Mutation p.N103S 0.06 deleterious(0.04) probably_damaging(0.993) TCGA-CN-6023-01 4 110384711 110384711 C T SEC24B Missense_Mutation p.S263L 0.33 deleterious_low_confidence(0.03) benign(0.118) TCGA-CN-6023-01 4 73930982 73930982 C A COX18 Missense_Mutation p.A195S 0.35 tolerated(0.25) benign(0.02) TCGA-CN-6023-01 4 83821880 83821880 C G THAP9 5'Flank 0.36 TCGA-CN-6023-01 5 131915747 131915747 G T RAD50 Missense_Mutation p.D249Y 0.15 deleterious(0.01) possibly_damaging(0.696) TCGA-CN-6023-01 5 138362615 138362615 G C SIL1 Missense_Mutation p.L174V 0.17 deleterious(0) possibly_damaging(0.899) TCGA-CN-6023-01 5 34823598 34823598 G C RAI14 Missense_Mutation p.E554Q 0.06 tolerated(0.41) benign(0.111) TCGA-CN-6023-01 5 86670020 86670020 T A RASA1 Missense_Mutation p.L606H 0.39 deleterious(0) probably_damaging(0.997) TCGA-CN-6023-01 6 12125603 12125603 G A HIVEP1 Missense_Mutation p.E1859K 0.46 tolerated(0.13) benign(0.125) TCGA-CN-6023-01 6 139223693 139223693 G A ECT2L Missense_Mutation p.E882K 0.25 deleterious(0) probably_damaging(0.987) TCGA-CN-6023-01 6 153347672 153347672 A T RGS17 Silent p.T42T 0.30 TCGA-CN-6023-01 6 30547713 30547713 A G ABCF1 Silent p.V165V 0.44 TCGA-CN-6023-01 6 55922598 55922598 C G COL21A1 Missense_Mutation p.D911H 0.40 tolerated(0.1) unknown(0) TCGA-CN-6023-01 7 122338545 122338545 A C RNF133 Missense_Mutation p.F143C 0.35 deleterious(0.02) possibly_damaging(0.579) TCGA-CN-6023-01 7 129761910 129761910 A G KLHDC10 Missense_Mutation p.N216S 0.17 tolerated(0.13) benign(0.026) TCGA-CN-6023-01 7 134135632 134135632 T C AKR1B1 Missense_Mutation p.K86R 0.16 tolerated(0.41) benign(0.385) TCGA-CN-6023-01 7 151874913 151874913 G A KMT2C Missense_Mutation p.S2542L 0.36 benign(0.002) TCGA-CN-6023-01 7 154863070 154863070 G A HTR5A Missense_Mutation p.R154H 0.25 deleterious(0.02) probably_damaging(0.982) TCGA-CN-6023-01 7 20441678 20441678 G T ITGB8 Missense_Mutation p.G539V 0.22 deleterious(0) probably_damaging(1) TCGA-CN-6023-01 7 23191773 23191773 G A KLHL7 Missense_Mutation p.R294H 0.14 tolerated(0.55) benign(0.124) TCGA-CN-6023-01 7 44924293 44924293 G A PURB Missense_Mutation p.L219F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6023-01 7 44924294 44924294 C A PURB Missense_Mutation p.E218D 0.20 tolerated(0.15) probably_damaging(0.997) TCGA-CN-6023-01 7 90895177 90895177 G C FZD1 Missense_Mutation p.V328L 0.13 tolerated(0.07) benign(0.088) TCGA-CN-6023-01 7 97816267 97816267 G A LMTK2 Missense_Mutation p.D319N 0.10 tolerated(0.13) possibly_damaging(0.861) TCGA-CN-6023-01 7 98535316 98535316 A T TRRAP Missense_Mutation p.H1426L 0.13 benign(0.002) TCGA-CN-6023-01 8 106814630 106814630 C T ZFPM2 Nonsense_Mutation p.Q774* 0.12 TCGA-CN-6023-01 8 144239772 144239772 C G LY6H Missense_Mutation p.E127D 0.09 tolerated(0.56) benign(0.013) TCGA-CN-6023-01 8 3087643 3087643 G A CSMD1 Nonsense_Mutation p.Q1422* 0.43 TCGA-CN-6023-01 9 131088088 131088088 C G COQ4 Silent p.L110L 0.27 TCGA-CN-6023-01 9 132641720 132641720 C T USP20 Intron 0.17 TCGA-CN-6023-01 9 35059698 35059698 C T VCP Missense_Mutation p.R599Q 0.17 deleterious(0.02) probably_damaging(1) TCGA-CN-6023-01 9 35061650 35061650 T A VCP Missense_Mutation p.D373V 0.05 deleterious(0) probably_damaging(1) TCGA-CN-6023-01 9 37948721 37948721 G A SHB Silent p.D419D 0.06 TCGA-CN-6023-01 9 5773076 5773076 G C KIAA1432 Missense_Mutation p.D1327H 0.19 deleterious(0) benign(0.243) TCGA-CN-6023-01 9 99150720 99150720 C T ZNF367 Silent p.Q284Q 0.36 TCGA-CN-6023-01 X 100169656 100169656 C A XKRX Missense_Mutation p.D341Y 0.47 deleterious(0) possibly_damaging(0.775) TCGA-CN-6023-01 X 107037501 107037501 C T NCBP2L Silent p.S17S 0.52 TCGA-CN-6023-01 X 129147536 129147536 C T BCORL1 Missense_Mutation p.P263L 0.25 unknown(0) TCGA-CN-6023-01 X 142718314 142718314 C T SLITRK4 Missense_Mutation p.R204H 0.33 tolerated(0.11) probably_damaging(0.998) TCGA-CN-6023-01 X 153649016 153649016 G A TAZ Missense_Mutation p.G240E 0.45 deleterious(0) probably_damaging(0.988) TCGA-CN-6023-01 X 26212225 26212225 G T MAGEB6 Missense_Mutation p.G88C 0.34 tolerated(0.11) probably_damaging(0.971) TCGA-CN-6023-01 X 30268842 30268842 G T MAGEB1 Nonsense_Mutation p.E78* 0.38 TCGA-CN-6023-01 X 31497125 31497125 T C DMD Silent p.L2881L 0.61 TCGA-CN-6023-01 X 53421731 53421731 C G SMC1A Missense_Mutation p.E980D 0.12 tolerated(0.1) benign(0.035) TCGA-CN-6024-01 10 123954555 123954555 G A TACC2 Silent p.R1945R 0.27 TCGA-CN-6024-01 10 134648256 134648256 T C TTC40 Silent p.E2256E 0.27 TCGA-CN-6024-01 10 14961768 14961768 C A DCLRE1C Silent p.L375L 0.32 TCGA-CN-6024-01 10 87966319 87966319 C T GRID1 Missense_Mutation p.A108T 0.31 tolerated(0.17) probably_damaging(0.997) TCGA-CN-6024-01 10 98743204 98743204 A G C10orf12 Missense_Mutation p.N686S 0.53 tolerated(0.8) benign(0.002) TCGA-CN-6024-01 11 108115564 108115564 A G ATM Missense_Mutation p.I238V 0.29 tolerated(0.41) benign(0.001) TCGA-CN-6024-01 11 108143284 108143284 A G ATM Missense_Mutation p.I1035V 0.28 tolerated(0.23) benign(0.001) TCGA-CN-6024-01 11 111155057 111155057 G A C11orf53 Silent p.P88P 0.29 TCGA-CN-6024-01 11 122848579 122848579 G A BSX Silent p.N160N 0.36 TCGA-CN-6024-01 11 17496473 17496473 C T ABCC8 Missense_Mutation p.V84I 0.34 tolerated(0.2) benign(0.218) TCGA-CN-6024-01 11 34502384 34502384 T A ELF5 Silent p.A212A 0.44 TCGA-CN-6024-01 11 40137317 40137317 G T LRRC4C Silent p.R176R 0.45 TCGA-CN-6024-01 11 49207301 49207301 G A FOLH1 Missense_Mutation p.P249L 0.25 deleterious(0) probably_damaging(1) TCGA-CN-6024-01 11 55111275 55111275 A G OR4A16 Missense_Mutation p.N200S 0.48 deleterious_low_confidence(0.03) possibly_damaging(0.536) TCGA-CN-6024-01 11 5530480 5530480 T G UBQLN3 Silent p.P103P 0.26 TCGA-CN-6024-01 11 5701437 5701437 T G TRIM5 5'UTR 0.39 TCGA-CN-6024-01 11 64116884 64116884 C T CCDC88B Missense_Mutation p.L900F 0.14 deleterious(0) possibly_damaging(0.472) TCGA-CN-6024-01 11 66466927 66466927 G T SPTBN2 Silent p.G1242G 0.31 TCGA-CN-6024-01 11 86198421 86198421 T G ME3 Missense_Mutation p.Y256S 0.20 deleterious(0) probably_damaging(1) TCGA-CN-6024-01 11 92087366 92087366 A G FAT3 Silent p.L696L 0.29 TCGA-CN-6024-01 11 9878164 9878164 A T SBF2 Missense_Mutation p.L735Q 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-CN-6024-01 12 101603574 101603574 A T SLC5A8 Missense_Mutation p.F18Y 0.63 deleterious(0) probably_damaging(0.994) TCGA-CN-6024-01 12 124104214 124104214 G A DDX55 Silent p.K523K 0.35 TCGA-CN-6024-01 12 26812177 26812177 A C ITPR2 Missense_Mutation p.I585M 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-CN-6024-01 12 27533231 27533231 G A ARNTL2 Silent p.L126L 0.11 TCGA-CN-6024-01 12 41302265 41302265 G T CNTN1 Missense_Mutation p.V11L 0.56 tolerated(1) benign(0.001) TCGA-CN-6024-01 12 50027756 50027756 C T PRPF40B Silent p.T231T 0.70 TCGA-CN-6024-01 12 86198764 86198764 C G RASSF9 Missense_Mutation p.E342Q 0.60 tolerated(0.39) benign(0.219) TCGA-CN-6024-01 12 99060113 99060113 A G APAF1 Missense_Mutation p.E447G 0.47 deleterious(0) possibly_damaging(0.862) TCGA-CN-6024-01 13 103513864 103513864 A T BIVM-ERCC5 Missense_Mutation p.D653V 0.64 deleterious(0.02) benign(0.005) TCGA-CN-6024-01 13 26967636 26967636 G T CDK8 Missense_Mutation p.G260V 0.56 deleterious(0) probably_damaging(0.992) TCGA-CN-6024-01 13 48951101 48951101 T C RB1 Silent p.D421D 0.63 TCGA-CN-6024-01 13 79945213 79945213 G A RBM26 Silent p.D167D 0.62 TCGA-CN-6024-01 14 24624491 24624491 C G RNF31 Silent p.L752L 0.53 TCGA-CN-6024-01 14 31581699 31581699 T C HECTD1 Silent p.L2067L 0.30 TCGA-CN-6024-01 14 50101425 50101425 G T DNAAF2 Missense_Mutation p.P148Q 0.29 deleterious(0.03) probably_damaging(0.974) TCGA-CN-6024-01 14 55903569 55903569 A G TBPL2 Silent p.V106V 0.47 TCGA-CN-6024-01 14 64679605 64679605 A G SYNE2 Missense_Mutation p.K6313R 0.54 probably_damaging(0.999) TCGA-CN-6024-01 14 74036297 74036297 C T ACOT2 Missense_Mutation p.T118I 0.51 tolerated(0.09) benign(0.084) TCGA-CN-6024-01 14 88945577 88945577 C A PTPN21 Missense_Mutation p.R733L 0.16 tolerated_low_confidence(0.33) benign(0.015) TCGA-CN-6024-01 14 94510931 94510931 G A OTUB2 Splice_Site p.X102_splice 0.29 TCGA-CN-6024-01 15 22332718 22332718 T C RP11-69H14.6 RNA 0.28 TCGA-CN-6024-01 15 34016286 34016286 A T RYR3 Missense_Mutation p.E2274V 0.58 benign(0.128) TCGA-CN-6024-01 15 53081808 53081808 C T ONECUT1 Missense_Mutation p.E92K 0.68 deleterious(0.01) benign(0.102) TCGA-CN-6024-01 15 55965703 55965703 G A PRTG Missense_Mutation p.T573M 0.65 deleterious(0.03) benign(0.042) TCGA-CN-6024-01 15 81585276 81585276 A T IL16 Silent p.P600P 0.45 TCGA-CN-6024-01 16 24931340 24931340 T - ARHGAP17 3'UTR 0.39 TCGA-CN-6024-01 16 56914084 56914084 G A SLC12A3 Missense_Mutation p.G496S 0.38 tolerated(0.13) probably_damaging(0.975) TCGA-CN-6024-01 16 58633298 58633298 C T CNOT1 5'UTR 0.17 TCGA-CN-6024-01 16 68847250 68847255 TCGTAA - CDH1 In_Frame_Del p.V392_I393del 0.29 TCGA-CN-6024-01 16 72094648 72094648 C T HP Silent p.A360A 0.23 TCGA-CN-6024-01 16 836037 836037 T A RPUSD1 Silent p.P284P 0.30 TCGA-CN-6024-01 17 10360801 10360801 C A MYH4 Silent p.L611L 0.42 TCGA-CN-6024-01 17 15231309 15231309 C A TEKT3 Silent p.T221T 0.63 TCGA-CN-6024-01 17 15532098 15532098 T C TRIM16 Missense_Mutation p.Y509C 0.14 deleterious(0) probably_damaging(0.998) TCGA-CN-6024-01 17 19015741 19015741 G A SNORD3D RNA 0.07 TCGA-CN-6024-01 17 33338994 33338994 C T RFFL Missense_Mutation p.R362Q 0.26 deleterious(0.01) possibly_damaging(0.716) TCGA-CN-6024-01 17 40322268 40322268 G A KCNH4 Missense_Mutation p.S416L 0.56 deleterious(0.04) benign(0.164) TCGA-CN-6024-01 17 47590198 47590198 G A NGFR Missense_Mutation p.E371K 0.33 deleterious(0.03) possibly_damaging(0.821) TCGA-CN-6024-01 17 57292263 57292263 C G SMG8 Missense_Mutation p.A959G 0.40 deleterious(0.03) benign(0.266) TCGA-CN-6024-01 17 63532996 63532996 T A AXIN2 Missense_Mutation p.K633M 0.26 deleterious(0.02) possibly_damaging(0.902) TCGA-CN-6024-01 17 73751849 73751849 A C ITGB4 Silent p.T1542T 0.17 TCGA-CN-6024-01 17 7577144 7577144 A C TP53 Missense_Mutation p.L265R 0.65 deleterious(0) probably_damaging(1) TCGA-CN-6024-01 17 76967771 76967771 C T LGALS3BP Missense_Mutation p.D549N 0.27 tolerated(0.45) benign(0.004) TCGA-CN-6024-01 17 7797825 7797826 - A CHD3 Frame_Shift_Ins p.I450Nfs*5 0.30 TCGA-CN-6024-01 18 32428278 32428278 C A DTNA Missense_Mutation p.N368K 0.57 tolerated(0.28) benign(0.005) TCGA-CN-6024-01 18 5890315 5890324 GGTGGCTCCT - TMEM200C Frame_Shift_Del p.Q580Pfs*21 0.12 TCGA-CN-6024-01 19 10738659 10738659 G A SLC44A2 Missense_Mutation p.G75E 0.50 deleterious(0) probably_damaging(0.994) TCGA-CN-6024-01 19 12501389 12501389 T A ZNF799 Missense_Mutation p.K608M 0.34 deleterious(0) possibly_damaging(0.707) TCGA-CN-6024-01 19 1506029 1506029 C T ADAMTSL5 Silent p.R467R 0.53 TCGA-CN-6024-01 19 15296203 15296204 CA - NOTCH3 Nonsense_Mutation p.C720* 0.42 TCGA-CN-6024-01 19 15580523 15580523 C A PGLYRP2 Missense_Mutation p.G521C 0.29 deleterious(0) probably_damaging(1) TCGA-CN-6024-01 19 17740103 17740103 T A UNC13A Silent p.A1233A 0.36 TCGA-CN-6024-01 19 20044894 20044894 C T ZNF93 Missense_Mutation p.A377V 0.38 tolerated(0.07) benign(0.055) TCGA-CN-6024-01 19 21934717 21934717 C T ZNF100 Intron 0.27 TCGA-CN-6024-01 19 37398928 37398928 T C ZNF829 Splice_Site p.X156_splice 0.23 TCGA-CN-6024-01 19 37618477 37618477 A G ZNF420 Missense_Mutation p.Y195C 0.25 deleterious(0.01) probably_damaging(0.97) TCGA-CN-6024-01 19 39103266 39103266 T A MAP4K1 Missense_Mutation p.D217V 0.46 deleterious(0) probably_damaging(1) TCGA-CN-6024-01 19 44981291 44981291 T A ZNF180 Missense_Mutation p.Q469H 0.25 tolerated(0.42) probably_damaging(0.975) TCGA-CN-6024-01 19 54396287 54396287 G A PRKCG Silent p.P289P 0.13 TCGA-CN-6024-01 19 57133988 57133988 A T ZNF71 Nonsense_Mutation p.K445* 0.40 TCGA-CN-6024-01 19 9058238 9058238 C A MUC16 Silent p.T9736T 0.41 TCGA-CN-6024-01 19 9324922 9324922 C A OR7D4 Missense_Mutation p.V198F 0.13 tolerated(0.79) benign(0.004) TCGA-CN-6024-01 1 101705292 101705292 C T S1PR1 Missense_Mutation p.S251L 0.50 deleterious(0.02) possibly_damaging(0.842) TCGA-CN-6024-01 1 104297377 104297377 T C AMY1C Missense_Mutation p.Y348H 0.10 deleterious(0.01) probably_damaging(1) TCGA-CN-6024-01 1 151826074 151826074 G A THEM5 5'UTR 0.19 TCGA-CN-6024-01 1 158064599 158064599 C T KIRREL Missense_Mutation p.R655W 0.31 deleterious(0) probably_damaging(0.912) TCGA-CN-6024-01 1 165667675 165667675 C T ALDH9A1 Missense_Mutation p.G41R 0.36 deleterious(0) benign(0.136) TCGA-CN-6024-01 1 171085379 171085379 G A FMO3 Missense_Mutation p.M405I 0.37 deleterious(0.02) benign(0.068) TCGA-CN-6024-01 1 176760576 176760576 C A PAPPA2 Missense_Mutation p.L1660M 0.47 tolerated(0.12) probably_damaging(0.974) TCGA-CN-6024-01 1 243778440 243778440 A C AKT3 Silent p.T195T 0.33 TCGA-CN-6024-01 1 247051786 247051786 A G AHCTF1 Silent p.D735D 0.55 TCGA-CN-6024-01 1 43825057 43825057 C T CDC20 Silent p.G57G 0.67 TCGA-CN-6024-01 1 46295227 46295228 TC - MAST2 Frame_Shift_Del p.S148Cfs*24 0.40 TCGA-CN-6024-01 1 46739822 46739822 C T RAD54L Silent p.V541V 0.45 TCGA-CN-6024-01 1 47583599 47583599 T C CYP4Z1 Missense_Mutation p.V504A 0.50 deleterious(0.02) benign(0.005) TCGA-CN-6024-01 1 70225873 70225873 G T LRRC7 5'UTR 0.41 TCGA-CN-6024-01 1 75072415 75072415 T A C1orf173 Silent p.S453S 0.65 TCGA-CN-6024-01 1 87043754 87043754 C T CLCA4 Silent p.N707N 0.30 TCGA-CN-6024-01 1 98164954 98164954 G A DPYD Silent p.Y211Y 0.64 TCGA-CN-6024-01 20 22563619 22563619 G C FOXA2 Silent p.S87S 0.34 TCGA-CN-6024-01 20 31967483 31967483 C T CDK5RAP1 Silent p.V297V 0.13 TCGA-CN-6024-01 20 31967498 31967498 C G CDK5RAP1 Splice_Site p.X293_splice 0.12 TCGA-CN-6024-01 20 34021968 34021968 G A GDF5 Silent p.D415D 0.68 TCGA-CN-6024-01 20 3673192 3673192 G A SIGLEC1 Missense_Mutation p.R1336C 0.26 deleterious(0.02) probably_damaging(0.954) TCGA-CN-6024-01 20 62378483 62378483 G C ZBTB46 Missense_Mutation p.P524A 0.29 tolerated(0.18) benign(0.338) TCGA-CN-6024-01 20 9498787 9498787 T C LAMP5 Silent p.S192S 0.34 TCGA-CN-6024-01 21 31812926 31812926 C T KRTAP15-1 Missense_Mutation p.S94F 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-CN-6024-01 21 46685544 46685544 A G POFUT2 Silent p.F381F 0.44 TCGA-CN-6024-01 22 26937142 26937142 G C TPST2 Missense_Mutation p.A152G 0.34 deleterious(0) probably_damaging(0.991) TCGA-CN-6024-01 22 29490261 29490261 A G KREMEN1 Missense_Mutation p.N38S 0.37 deleterious(0.01) possibly_damaging(0.711) TCGA-CN-6024-01 22 39908272 39908272 A T MIEF1 Missense_Mutation p.R120W 0.40 deleterious(0.02) benign(0.271) TCGA-CN-6024-01 22 40060149 40060149 C T CACNA1I Silent p.G1217G 0.23 TCGA-CN-6024-01 22 41753426 41753426 G T ZC3H7B Missense_Mutation p.G976V 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-CN-6024-01 2 100209720 100209720 C A AFF3 Silent p.P826P 0.34 TCGA-CN-6024-01 2 103125363 103125363 G T SLC9A4 Nonsense_Mutation p.E487* 0.22 TCGA-CN-6024-01 2 106497977 106497977 C T NCK2 Silent p.V140V 0.43 TCGA-CN-6024-01 2 112542952 112542952 T C ANAPC1 Silent p.L1634L 0.40 TCGA-CN-6024-01 2 113343977 113343977 C T CHCHD5 Intron 0.17 TCGA-CN-6024-01 2 141272305 141272305 G A LRP1B Missense_Mutation p.A2729V 0.24 benign(0.015) TCGA-CN-6024-01 2 152398013 152398013 G T NEB Missense_Mutation p.P6877H 0.17 probably_damaging(0.935) TCGA-CN-6024-01 2 161223852 161223852 G T RBMS1 Silent p.T42T 0.24 TCGA-CN-6024-01 2 166770094 166770094 T C TTC21B Missense_Mutation p.N734S 0.22 tolerated(0.67) benign(0.016) TCGA-CN-6024-01 2 179462324 179462324 G T TTN Missense_Mutation p.S19162Y 0.17 TCGA-CN-6024-01 2 179587395 179587395 T C TTN Missense_Mutation p.R7411G 0.16 TCGA-CN-6024-01 2 179736188 179736188 C T CCDC141 Missense_Mutation p.R724Q 0.16 tolerated(1) benign(0.004) TCGA-CN-6024-01 2 180036936 180036936 G A SESTD1 Missense_Mutation p.L94F 0.25 deleterious(0.03) probably_damaging(0.941) TCGA-CN-6024-01 2 212251875 212251875 T G ERBB4 Missense_Mutation p.N1062H 0.30 deleterious(0.03) possibly_damaging(0.906) TCGA-CN-6024-01 2 24521568 24521568 T C ITSN2 Missense_Mutation p.K487R 0.29 tolerated(0.38) unknown(0) TCGA-CN-6024-01 2 27303763 27303763 C T EMILIN1 Missense_Mutation p.R152C 0.27 probably_damaging(0.975) TCGA-CN-6024-01 2 27706461 27706461 C T IFT172 Silent p.V156V 0.25 TCGA-CN-6024-01 2 29092865 29092865 C T TRMT61B Silent p.L93L 0.28 TCGA-CN-6024-01 2 96933414 96933414 G A CIAO1 Missense_Mutation p.A114T 0.25 deleterious(0.01) possibly_damaging(0.882) TCGA-CN-6024-01 3 101535759 101535759 C G NXPE3 Missense_Mutation p.T348R 0.20 deleterious(0) benign(0.432) TCGA-CN-6024-01 3 126219567 126219567 A T UROC1 Silent p.P432P 0.20 TCGA-CN-6024-01 3 130293063 130293063 G T COL6A6 Missense_Mutation p.A1081S 0.17 tolerated(0.8) benign(0.015) TCGA-CN-6024-01 3 150460290 150460290 A T SIAH2 Missense_Mutation p.F205I 0.19 deleterious(0) probably_damaging(1) TCGA-CN-6024-01 3 15100956 15100956 T A MRPS25 Missense_Mutation p.Q54L 0.29 deleterious(0) possibly_damaging(0.513) TCGA-CN-6024-01 3 160474321 160474321 T C PPM1L Silent p.L75L 0.08 TCGA-CN-6024-01 3 164907251 164907251 G T SLITRK3 Silent p.P456P 0.17 TCGA-CN-6024-01 3 171394568 171394568 T G PLD1 Silent p.A684A 0.20 TCGA-CN-6024-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.47 tolerated(0.11) possibly_damaging(0.529) TCGA-CN-6024-01 3 183547407 183547407 T C PARL Silent p.K373K 0.26 TCGA-CN-6024-01 3 47450995 47450995 C T PTPN23 Missense_Mutation p.A629V 0.88 unknown(0) TCGA-CN-6024-01 3 68802098 68802098 C T FAM19A4 Missense_Mutation p.E68K 0.46 deleterious(0.01) probably_damaging(1) TCGA-CN-6024-01 3 97503853 97503853 T A ARL6 Silent p.V103V 0.53 TCGA-CN-6024-01 4 104016422 104016422 C A BDH2 Missense_Mutation p.G30V 0.39 deleterious(0) probably_damaging(1) TCGA-CN-6024-01 4 113553143 113553143 C T C4orf21 Missense_Mutation p.M15I 0.72 tolerated(0.08) benign(0.002) TCGA-CN-6024-01 4 134084195 134084195 G A PCDH10 Nonsense_Mutation p.W954* 0.55 TCGA-CN-6024-01 4 15835919 15835919 C A CD38 Silent p.S193S 0.21 TCGA-CN-6024-01 4 187532702 187532705 CAAA - FAT1 Frame_Shift_Del p.F3230Sfs*39 0.71 TCGA-CN-6024-01 4 46067515 46067515 G T GABRG1 Missense_Mutation p.N136K 0.15 deleterious(0) probably_damaging(0.996) TCGA-CN-6024-01 4 47667085 47667085 C T CORIN Missense_Mutation p.C518Y 0.27 deleterious(0) probably_damaging(0.987) TCGA-CN-6024-01 5 11565110 11565110 C T CTNND2 Missense_Mutation p.S78N 0.50 tolerated(0.45) benign(0.049) TCGA-CN-6024-01 5 140215095 140215095 A T PCDHA7 Missense_Mutation p.D376V 0.26 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CN-6024-01 5 140215144 140215144 C T PCDHA7 Silent p.R392R 0.22 TCGA-CN-6024-01 5 140530019 140530019 C T PCDHB6 Missense_Mutation p.R61W 0.33 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-CN-6024-01 5 140908052 140908052 T A DIAPH1 Missense_Mutation p.D1039V 0.52 probably_damaging(0.99) TCGA-CN-6024-01 5 141336084 141336084 G A PCDH12 Nonsense_Mutation p.Q445* 0.30 TCGA-CN-6024-01 5 1432743 1432743 C A SLC6A3 Silent p.A163A 0.25 TCGA-CN-6024-01 5 145506097 145506097 T A LARS Silent p.G964G 0.76 TCGA-CN-6024-01 5 159686758 159686758 C A CCNJL Missense_Mutation p.D149Y 0.53 deleterious(0) probably_damaging(0.957) TCGA-CN-6024-01 5 16877787 16877787 G T MYO10 Silent p.G17G 0.35 TCGA-CN-6024-01 5 179440200 179440200 A T RNF130 Missense_Mutation p.M185K 0.25 tolerated(0.12) benign(0) TCGA-CN-6024-01 5 23526849 23526849 T A PRDM9 Missense_Mutation p.L551H 0.35 deleterious(0) possibly_damaging(0.793) TCGA-CN-6024-01 5 23526850 23526850 C T PRDM9 Silent p.L551L 0.37 TCGA-CN-6024-01 5 31294222 31294222 G T CDH6 Missense_Mutation p.A128S 0.16 deleterious(0) probably_damaging(0.994) TCGA-CN-6024-01 5 33937766 33937766 G A RXFP3 Silent p.A307A 0.46 TCGA-CN-6024-01 5 37605263 37605263 A T WDR70 Missense_Mutation p.T339S 0.25 tolerated(0.33) benign(0.241) TCGA-CN-6024-01 5 41004527 41004527 A G MROH2B Missense_Mutation p.I1372T 0.49 deleterious(0) benign(0.358) TCGA-CN-6024-01 5 74722212 74722212 G C COL4A3BP Missense_Mutation p.S275C 0.21 deleterious(0) probably_damaging(1) TCGA-CN-6024-01 5 75886317 75886317 C T IQGAP2 Missense_Mutation p.A242V 0.51 tolerated(0.11) possibly_damaging(0.756) TCGA-CN-6024-01 6 10907904 10907904 G C SYCP2L Missense_Mutation p.R269P 0.38 deleterious(0.03) probably_damaging(0.933) TCGA-CN-6024-01 6 112513043 112513043 G A LAMA4 Silent p.P171P 0.21 TCGA-CN-6024-01 6 127796905 127796905 C T SOGA3 Missense_Mutation p.D756N 0.29 deleterious(0) probably_damaging(0.986) TCGA-CN-6024-01 6 133044829 133044829 A G VNN3 Intron 0.56 TCGA-CN-6024-01 6 136977517 136977517 T C MAP3K5 Silent p.Q536Q 0.32 TCGA-CN-6024-01 6 146127529 146127529 G A FBXO30 Silent p.L5L 0.29 TCGA-CN-6024-01 6 165752811 165752811 G A PDE10A Missense_Mutation p.P712S 0.26 tolerated(0.1) benign(0.1) TCGA-CN-6024-01 6 170592411 170592411 G A DLL1 Silent p.T652T 0.18 TCGA-CN-6024-01 6 33657012 33657012 C T ITPR3 Intron 0.39 TCGA-CN-6024-01 6 556005 556005 T C EXOC2 Silent p.Q647Q 0.46 TCGA-CN-6024-01 6 55620386 55620386 T A BMP5 Missense_Mutation p.N437I 0.46 deleterious(0) probably_damaging(0.999) TCGA-CN-6024-01 7 117351772 117351772 A T CTTNBP2 Nonsense_Mutation p.L1604* 0.52 TCGA-CN-6024-01 7 122091450 122091450 C G CADPS2 Missense_Mutation p.E756Q 0.13 deleterious(0.02) benign(0.244) TCGA-CN-6024-01 7 149474828 149474828 C T ZNF467 5'Flank 0.45 TCGA-CN-6024-01 7 38530702 38530702 T C AMPH Missense_Mutation p.D115G 0.20 deleterious(0) probably_damaging(0.926) TCGA-CN-6024-01 7 57188062 57188062 C T ZNF479 Missense_Mutation p.A354T 0.25 tolerated(0.08) benign(0.002) TCGA-CN-6024-01 7 76021316 76021316 T A SRCRB4D Missense_Mutation p.E459V 0.33 tolerated(0.3) benign(0.067) TCGA-CN-6024-01 7 7628164 7628164 A G MIOS Silent p.A618A 0.41 TCGA-CN-6024-01 7 94931578 94931578 C G PON1 Missense_Mutation p.G283A 0.17 deleterious(0.05) benign(0.104) TCGA-CN-6024-01 7 98931012 98931012 C T ARPC1A Silent p.T12T 0.31 TCGA-CN-6024-01 8 100789144 100789144 G A VPS13B Silent p.L2488L 0.26 TCGA-CN-6024-01 8 110984585 110984585 C A KCNV1 Missense_Mutation p.S298I 0.23 tolerated(0.07) benign(0.134) TCGA-CN-6024-01 8 130765053 130765053 G A GSDMC Silent p.S245S 0.12 TCGA-CN-6024-01 8 133881999 133881999 C A TG Missense_Mutation p.R68S 0.60 tolerated(0.72) benign(0.02) TCGA-CN-6024-01 8 135524795 135524795 G A ZFAT Missense_Mutation p.T1095I 0.13 tolerated(0.17) benign(0.05) TCGA-CN-6024-01 8 55541985 55541985 C A RP1 Missense_Mutation p.A1848E 0.12 tolerated(0.07) benign(0.021) TCGA-CN-6024-01 8 59410989 59410989 T C CYP7A1 Silent p.P40P 0.25 TCGA-CN-6024-01 8 70744483 70744483 C T SLCO5A1 Silent p.A142A 0.12 TCGA-CN-6024-01 8 87163762 87163762 A G ATP6V0D2 Missense_Mutation p.E295G 0.23 deleterious(0.03) benign(0.316) TCGA-CN-6024-01 9 101816858 101816858 G T COL15A1 Missense_Mutation p.G984V 0.73 deleterious(0) probably_damaging(0.998) TCGA-CN-6024-01 9 107267404 107267404 T C OR13F1 Silent p.P287P 0.88 TCGA-CN-6024-01 9 116191548 116191548 C T C9orf43 Missense_Mutation p.S423F 0.21 deleterious(0.03) possibly_damaging(0.693) TCGA-CN-6024-01 9 131515598 131515598 C T ZER1 Silent p.P197P 0.57 TCGA-CN-6024-01 9 73399062 73399062 C T TRPM3 Silent p.S369S 0.63 TCGA-CN-6024-01 9 79323433 79323433 G T PRUNE2 Missense_Mutation p.P1253T 0.64 tolerated(0.16) benign(0.011) TCGA-CN-6024-01 X 104512216 104512216 A C IL1RAPL2 Missense_Mutation p.K230T 0.69 tolerated(0.32) benign(0.264) TCGA-CN-6024-01 X 107553986 107553986 C T COL4A6 Missense_Mutation p.G47R 0.86 unknown(0) TCGA-CN-6024-01 X 18660166 18660166 G A RS1 Silent p.A211A 0.77 TCGA-CN-6024-01 X 31227736 31227736 G - DMD Frame_Shift_Del p.L3148Cfs*7 0.41 TCGA-CN-6024-01 X 63445187 63445187 C G ASB12 Missense_Mutation p.S115T 0.58 tolerated(0.99) probably_damaging(0.987) TCGA-CN-6024-01 X 71887231 71887231 G A PHKA1 Silent p.H237H 0.73 TCGA-CN-6024-01 X 73066964 73066964 A G XIST RNA 0.17 TCGA-CN-6988-01 10 118386435 118386435 G T PNLIPRP2 Missense_Mutation p.A131S 0.27 tolerated(0.15) benign(0.246) TCGA-CN-6988-01 10 123719881 123719881 G A NSMCE4A Missense_Mutation p.P327L 0.24 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 10 134626342 134626342 T C TTC40 Missense_Mutation p.E2483G 0.30 deleterious(0.02) benign(0.033) TCGA-CN-6988-01 10 17142173 17142173 A C CUBN Silent p.L532L 0.35 TCGA-CN-6988-01 10 32863390 32863390 G - CCDC7 3'UTR 0.25 TCGA-CN-6988-01 10 52575977 52575977 A T A1CF Silent p.V318V 0.26 TCGA-CN-6988-01 10 70406098 70406098 T C TET1 Silent p.H1204H 0.29 TCGA-CN-6988-01 10 75158106 75158106 T C ANXA7 Missense_Mutation p.Q31R 0.38 tolerated(0.34) unknown(0) TCGA-CN-6988-01 10 8100734 8100734 C A GATA3 Silent p.P236P 0.39 TCGA-CN-6988-01 11 111636073 111636074 - ATT PPP2R1B In_Frame_Ins p.I50dup 0.31 TCGA-CN-6988-01 11 117052527 117052527 C G SIDT2 Missense_Mutation p.Q104E 0.34 tolerated(0.09) probably_damaging(0.977) TCGA-CN-6988-01 11 121454271 121454271 G T SORL1 Missense_Mutation p.D1229Y 0.49 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 11 22296276 22296276 A T ANO5 Silent p.R799R 0.30 TCGA-CN-6988-01 11 46439569 46439569 C A AMBRA1 Missense_Mutation p.D914Y 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-6988-01 11 49597894 49597894 G A RP11-707M1.1 RNA 0.32 TCGA-CN-6988-01 11 65685263 65685263 G A C11orf68 Silent p.H183H 0.25 TCGA-CN-6988-01 11 76253279 76253279 C T C11orf30 Silent p.P859P 0.52 TCGA-CN-6988-01 11 88386529 88386529 C A GRM5 Missense_Mutation p.Q318H 0.18 deleterious(0) possibly_damaging(0.878) TCGA-CN-6988-01 11 95580901 95580901 T C MTMR2 Missense_Mutation p.T386A 0.24 deleterious(0) benign(0.371) TCGA-CN-6988-01 12 103695967 103695967 T - C12orf42 Frame_Shift_Del p.R337Afs*19 0.12 TCGA-CN-6988-01 12 108589613 108589613 G T WSCD2 Missense_Mutation p.A2S 0.22 deleterious(0) probably_damaging(0.998) TCGA-CN-6988-01 12 120934324 120934324 A G DYNLL1 Missense_Mutation p.I34V 0.19 tolerated(0.57) benign(0.012) TCGA-CN-6988-01 12 21377659 21377659 G A SLCO1B1 Missense_Mutation p.G584E 0.42 deleterious(0) probably_damaging(0.999) TCGA-CN-6988-01 12 266231 266231 G A IQSEC3 Missense_Mutation p.D732N 0.33 deleterious(0) probably_damaging(0.989) TCGA-CN-6988-01 12 48191248 48191248 G A HDAC7 Missense_Mutation p.R166C 0.32 tolerated(0.11) benign(0.013) TCGA-CN-6988-01 12 50368216 50368216 C T AQP6 Missense_Mutation p.S171F 0.34 deleterious(0.01) probably_damaging(0.97) TCGA-CN-6988-01 12 56740685 56740685 G A STAT2 Silent p.T593T 0.47 TCGA-CN-6988-01 12 7175808 7175808 G A C1S Missense_Mutation p.G415D 0.48 deleterious(0.03) probably_damaging(0.929) TCGA-CN-6988-01 12 80211242 80211242 C T PPP1R12A Missense_Mutation p.A391T 0.22 tolerated(0.69) benign(0.002) TCGA-CN-6988-01 12 8083916 8083916 G A SLC2A3 Silent p.I145I 0.45 TCGA-CN-6988-01 13 109496738 109496738 A C MYO16 Missense_Mutation p.K360T 0.24 deleterious(0) probably_damaging(0.992) TCGA-CN-6988-01 13 111372285 111372285 G T ING1 3'UTR 0.55 TCGA-CN-6988-01 13 111372286 111372286 G T ING1 3'UTR 0.60 TCGA-CN-6988-01 13 50293956 50293956 C G KPNA3 Splice_Site p.X243_splice 0.82 TCGA-CN-6988-01 14 35008850 35008850 C T EAPP 5'UTR 0.90 TCGA-CN-6988-01 14 67784174 67784175 - T MPP5 Frame_Shift_Ins p.Y450Lfs*2 0.20 TCGA-CN-6988-01 15 20876572 20876572 G T NBEAP1 RNA 0.17 TCGA-CN-6988-01 15 26812872 26812872 G T GABRB3 Missense_Mutation p.P231T 0.35 deleterious(0.01) probably_damaging(1) TCGA-CN-6988-01 15 41549177 41549177 C T CHP1 Silent p.F70F 0.29 TCGA-CN-6988-01 15 42465981 42465981 T G VPS39 Missense_Mutation p.N344H 0.52 tolerated(0.43) benign(0.034) TCGA-CN-6988-01 15 53081052 53081052 G A ONECUT1 Missense_Mutation p.R344W 0.33 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 15 59445837 59445837 G A MYO1E Missense_Mutation p.T1011M 0.30 tolerated(0.11) benign(0.124) TCGA-CN-6988-01 15 63950807 63950807 C T HERC1 Missense_Mutation p.A3179T 0.24 probably_damaging(0.995) TCGA-CN-6988-01 15 91043351 91043351 G T IQGAP1 3'UTR 0.65 TCGA-CN-6988-01 15 92459366 92459366 G T SLCO3A1 Silent p.L108L 0.35 TCGA-CN-6988-01 16 2339465 2339465 C T ABCA3 Silent p.E890E 0.73 TCGA-CN-6988-01 16 23646937 23646937 A G PALB2 Silent p.S310S 0.32 TCGA-CN-6988-01 16 55730222 55730222 G A SLC6A2 Missense_Mutation p.M411I 0.21 deleterious(0) benign(0.385) TCGA-CN-6988-01 16 65016141 65016141 C G CDH11 Missense_Mutation p.D355H 0.18 deleterious(0) probably_damaging(0.978) TCGA-CN-6988-01 16 77327096 77327096 G C ADAMTS18 Silent p.A1022A 0.55 TCGA-CN-6988-01 17 32953598 32953598 C T TMEM132E Missense_Mutation p.R174W 0.56 deleterious(0.01) probably_damaging(0.985) TCGA-CN-6988-01 17 42850673 42850673 G A ADAM11 Missense_Mutation p.M290I 0.21 deleterious(0.04) benign(0.336) TCGA-CN-6988-01 17 54991400 54991400 C T TRIM25 5'Flank 0.61 TCGA-CN-6988-01 17 56770057 56770057 C G RAD51C Missense_Mutation p.P18R 0.21 deleterious(0) probably_damaging(0.992) TCGA-CN-6988-01 17 60112835 60112835 C T MED13 Missense_Mutation p.S202N 0.17 tolerated(0.11) benign(0.02) TCGA-CN-6988-01 17 62492731 62492731 A G POLG2 Missense_Mutation p.V119A 0.36 tolerated(0.16) benign(0.088) TCGA-CN-6988-01 17 72278070 72278070 C A DNAI2 Silent p.A38A 0.14 TCGA-CN-6988-01 17 73625498 73625498 C T RECQL5 Missense_Mutation p.A669T 0.19 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 17 7578505 7578515 GGGCAGGTCTT - TP53 Frame_Shift_Del p.K139Cfs*6 0.82 TCGA-CN-6988-01 17 76567831 76567831 G C DNAH17 Missense_Mutation p.H191Q 0.16 benign(0.417) TCGA-CN-6988-01 18 23772351 23772352 - A PSMA8 Frame_Shift_Ins p.S252Ifs*16 0.26 TCGA-CN-6988-01 18 2706416 2706416 A G SMCHD1 Missense_Mutation p.R671G 0.12 deleterious(0) probably_damaging(0.997) TCGA-CN-6988-01 18 2738442 2738442 G T SMCHD1 Silent p.L1108L 0.77 TCGA-CN-6988-01 18 44641700 44641700 G T HDHD2 Missense_Mutation p.P139T 0.38 tolerated(0.11) benign(0.01) TCGA-CN-6988-01 18 60025571 60025571 C T TNFRSF11A Missense_Mutation p.T173I 0.29 deleterious(0) probably_damaging(0.999) TCGA-CN-6988-01 19 38979900 38979900 G T RYR1 Missense_Mutation p.E1877D 0.23 benign(0.078) TCGA-CN-6988-01 19 40023356 40023356 G A EID2B Silent p.S29S 0.53 TCGA-CN-6988-01 19 42492178 42492179 - C ATP1A3 Frame_Shift_Ins p.F103Lfs*29 0.41 TCGA-CN-6988-01 19 42569484 42569484 G A GRIK5 Silent p.A45A 0.27 TCGA-CN-6988-01 19 49558681 49558681 G C CGB7 5'UTR 0.29 TCGA-CN-6988-01 19 54758761 54758761 C G LILRB5 Silent p.P364P 0.62 TCGA-CN-6988-01 19 56901764 56901764 T C ZNF582 Missense_Mutation p.Y39C 0.37 deleterious(0) probably_damaging(0.924) TCGA-CN-6988-01 19 56953438 56953438 G T ZNF667 Missense_Mutation p.P309H 0.26 tolerated(0.75) benign(0) TCGA-CN-6988-01 19 57335898 57335898 A T PEG3 Silent p.S42S 0.21 TCGA-CN-6988-01 19 57746416 57746416 G T AURKC Missense_Mutation p.R250L 0.16 deleterious(0.03) possibly_damaging(0.514) TCGA-CN-6988-01 19 58437946 58437946 C T ZNF418 Missense_Mutation p.E535K 0.22 deleterious(0.04) probably_damaging(0.933) TCGA-CN-6988-01 19 9008172 9008172 C A MUC16 Splice_Site p.X13127_splice 0.27 TCGA-CN-6988-01 1 100598459 100598459 T G SASS6 5'UTR 0.51 TCGA-CN-6988-01 1 112304856 112304856 T C DDX20 Intron 0.31 TCGA-CN-6988-01 1 113460045 113460045 C T SLC16A1 Missense_Mutation p.R328Q 0.22 deleterious(0.02) benign(0.298) TCGA-CN-6988-01 1 151206795 151206795 G A PIP5K1A Missense_Mutation p.M254I 0.25 deleterious(0.02) benign(0.137) TCGA-CN-6988-01 1 153318647 153318647 T C PGLYRP4 Missense_Mutation p.T24A 0.57 tolerated_low_confidence(0.06) benign(0.006) TCGA-CN-6988-01 1 155290743 155290743 C T RUSC1 5'UTR 0.37 TCGA-CN-6988-01 1 161518311 161518311 G T FCGR3A Missense_Mutation p.S109R 0.19 deleterious(0.02) probably_damaging(0.951) TCGA-CN-6988-01 1 161736177 161736177 C A ATF6 Silent p.G9G 0.17 TCGA-CN-6988-01 1 169138773 169138773 C A NME7 Missense_Mutation p.R337L 0.22 deleterious(0) probably_damaging(0.962) TCGA-CN-6988-01 1 173952661 173952661 C A RC3H1 Nonsense_Mutation p.E163* 0.48 TCGA-CN-6988-01 1 201104782 201104782 C A TMEM9 3'UTR 0.44 TCGA-CN-6988-01 1 207751508 207751508 C A CR1 Silent p.A1632A 0.28 TCGA-CN-6988-01 1 214184944 214184944 C G PROX1 Nonsense_Mutation p.Y638* 0.66 TCGA-CN-6988-01 1 237540685 237540685 C G RYR2 Missense_Mutation p.R176G 0.13 benign(0.109) TCGA-CN-6988-01 1 246729395 246729395 C A TFB2M Missense_Mutation p.A16S 0.49 tolerated(0.26) benign(0.062) TCGA-CN-6988-01 1 3669095 3669095 A G CCDC27 Missense_Mutation p.D17G 0.22 tolerated_low_confidence(0.4) possibly_damaging(0.728) TCGA-CN-6988-01 1 41220073 41220073 T A NFYC Intron 0.44 TCGA-CN-6988-01 1 42660589 42660589 T G FOXJ3 Silent p.S302S 0.31 TCGA-CN-6988-01 1 67518538 67518538 C T SLC35D1 Missense_Mutation p.M80I 0.27 deleterious(0.04) probably_damaging(0.993) TCGA-CN-6988-01 1 86200620 86200620 T C COL24A1 Missense_Mutation p.M1604V 0.29 deleterious(0) probably_damaging(0.996) TCGA-CN-6988-01 1 93602558 93602558 G C MTF2 Missense_Mutation p.E586Q 0.32 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 20 23420933 23420933 T C CSTL1 Missense_Mutation p.L10P 0.26 deleterious(0) probably_damaging(0.998) TCGA-CN-6988-01 20 42694723 42694723 G T TOX2 Missense_Mutation p.M444I 0.21 tolerated_low_confidence(0.42) benign(0.02) TCGA-CN-6988-01 20 5753649 5753649 G A C20orf196 Silent p.L46L 0.19 TCGA-CN-6988-01 21 22838935 22838935 G T NCAM2 Missense_Mutation p.V555F 0.29 deleterious(0.01) benign(0.418) TCGA-CN-6988-01 21 31803001 31803001 C A KRTAP13-4 Nonsense_Mutation p.Y136* 0.61 TCGA-CN-6988-01 21 47410327 47410327 C T COL6A1 Silent p.D331D 0.36 TCGA-CN-6988-01 21 47971570 47971570 G T DIP2A Missense_Mutation p.V955L 0.50 tolerated(0.07) probably_damaging(0.964) TCGA-CN-6988-01 22 18028225 18028225 G C CECR2 Missense_Mutation p.R1062T 0.19 deleterious_low_confidence(0.05) benign(0.436) TCGA-CN-6988-01 22 18650683 18650683 G A USP18 Silent p.T169T 0.49 TCGA-CN-6988-01 2 101607326 101607326 G A NPAS2 Silent p.R701R 0.77 TCGA-CN-6988-01 2 130872899 130872899 G T POTEF Missense_Mutation p.T175N 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CN-6988-01 2 145147514 145147514 G C ZEB2 Missense_Mutation p.S1050W 0.07 deleterious(0) probably_damaging(0.996) TCGA-CN-6988-01 2 179532239 179532239 G C TTN Silent p.P11881P 0.48 TCGA-CN-6988-01 2 179664292 179664292 C T TTN Missense_Mutation p.R279Q 0.24 TCGA-CN-6988-01 2 183699618 183699618 C A FRZB Missense_Mutation p.Q312H 0.56 tolerated_low_confidence(0.13) possibly_damaging(0.453) TCGA-CN-6988-01 2 201460091 201460091 G A AOX1 Missense_Mutation p.R67K 0.50 tolerated(0.47) benign(0.035) TCGA-CN-6988-01 2 212251600 212251600 A C ERBB4 Silent p.P1153P 0.53 TCGA-CN-6988-01 2 212543814 212543814 C A ERBB4 Nonsense_Mutation p.G529* 0.27 TCGA-CN-6988-01 2 215440586 215440586 T C VWC2L 3'UTR 0.42 TCGA-CN-6988-01 2 219553529 219553529 G C STK36 Missense_Mutation p.R497P 0.55 deleterious(0.02) possibly_damaging(0.448) TCGA-CN-6988-01 2 235950335 235950335 G T SH3BP4 Missense_Mutation p.G308C 0.28 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 2 235950336 235950336 G T SH3BP4 Missense_Mutation p.G308V 0.28 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 2 3691061 3691061 G A COLEC11 Missense_Mutation p.R133H 0.38 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 2 38301665 38301665 G A CYP1B1 Silent p.P289P 0.67 TCGA-CN-6988-01 2 74607154 74607154 C A DCTN1 Missense_Mutation p.S4I 0.62 deleterious_low_confidence(0.02) benign(0.072) TCGA-CN-6988-01 2 77745732 77745732 T C LRRTM4 Silent p.S421S 0.35 TCGA-CN-6988-01 2 77746588 77746588 C T LRRTM4 Missense_Mutation p.R136H 0.50 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 2 79313964 79313964 C T REG1B Missense_Mutation p.D53N 0.14 tolerated(0.48) possibly_damaging(0.708) TCGA-CN-6988-01 3 10050254 10050254 G C AC022007.5 RNA 0.38 TCGA-CN-6988-01 3 108211382 108211382 A T MYH15 Missense_Mutation p.F299Y 0.27 tolerated(0.11) probably_damaging(0.998) TCGA-CN-6988-01 3 113286384 113286384 C G SIDT1 Intron 0.26 TCGA-CN-6988-01 3 145790383 145790383 C T PLOD2 Missense_Mutation p.E605K 0.20 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 3 164732915 164732915 G A SI Missense_Mutation p.A1332V 0.27 deleterious(0) possibly_damaging(0.854) TCGA-CN-6988-01 3 170784416 170784416 G A TNIK Missense_Mutation p.R1270W 0.10 deleterious(0) probably_damaging(0.999) TCGA-CN-6988-01 3 173322785 173322785 G T NLGN1 Missense_Mutation p.V133L 0.66 tolerated(0.1) possibly_damaging(0.897) TCGA-CN-6988-01 3 174814816 174814816 A G NAALADL2 Missense_Mutation p.K94E 0.14 deleterious(0.01) possibly_damaging(0.813) TCGA-CN-6988-01 3 184002873 184002873 C A ECE2 Silent p.L494L 0.14 TCGA-CN-6988-01 3 38835351 38835351 G A SCN10A Missense_Mutation p.P51S 0.73 tolerated(0.06) benign(0.017) TCGA-CN-6988-01 3 44763729 44763729 C T ZNF502 Missense_Mutation p.H474Y 0.39 tolerated(0.18) benign(0.09) TCGA-CN-6988-01 4 114277887 114277887 C T ANK2 Missense_Mutation p.P2705S 0.53 benign(0.426) TCGA-CN-6988-01 4 119952081 119952081 A T SYNPO2 Silent p.S717S 0.28 TCGA-CN-6988-01 4 134071332 134071332 G C PCDH10 Missense_Mutation p.V13L 0.21 tolerated(1) benign(0.001) TCGA-CN-6988-01 4 184931953 184931953 G A STOX2 Silent p.K654K 0.47 TCGA-CN-6988-01 4 5016894 5016894 G A CYTL1 Missense_Mutation p.P132L 0.12 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-CN-6988-01 4 62812754 62812754 C G LPHN3 Missense_Mutation p.P780A 0.21 tolerated(0.73) benign(0.044) TCGA-CN-6988-01 4 70156309 70156309 G A UGT2B28 Splice_Site p.X364_splice 0.34 TCGA-CN-6988-01 4 70823387 70823387 G T CSN2 Missense_Mutation p.P94T 0.16 deleterious(0.04) possibly_damaging(0.908) TCGA-CN-6988-01 4 70823388 70823388 G T CSN2 Silent p.V93V 0.16 TCGA-CN-6988-01 4 94032099 94032099 A T GRID2 Missense_Mutation p.T244S 0.44 tolerated(0.89) benign(0.01) TCGA-CN-6988-01 4 96124103 96124103 C A UNC5C Missense_Mutation p.V639F 0.56 deleterious(0.01) possibly_damaging(0.598) TCGA-CN-6988-01 5 108523253 108523253 A G FER Missense_Mutation p.I816V 0.74 tolerated(0.34) benign(0) TCGA-CN-6988-01 5 114506852 114506852 G A TRIM36 Intron 0.73 TCGA-CN-6988-01 5 1212578 1212578 C T SLC6A19 Silent p.R214R 0.18 TCGA-CN-6988-01 5 124080436 124080436 G C ZNF608 Missense_Mutation p.L83V 0.50 deleterious(0.02) possibly_damaging(0.476) TCGA-CN-6988-01 5 140563721 140563721 C T PCDHB16 Silent p.F529F 0.83 TCGA-CN-6988-01 5 169446055 169446055 A G DOCK2 Missense_Mutation p.I1108M 0.72 deleterious(0) probably_damaging(0.973) TCGA-CN-6988-01 5 24511543 24511543 C A CDH10 Missense_Mutation p.G299W 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6988-01 5 26903856 26903856 C T CDH9 Missense_Mutation p.V297M 0.21 tolerated(0.21) benign(0.003) TCGA-CN-6988-01 5 31323131 31323131 C A CDH6 Missense_Mutation p.L697I 0.38 tolerated(0.45) probably_damaging(0.992) TCGA-CN-6988-01 5 37052609 37052609 A G NIPBL Missense_Mutation p.N2402D 0.28 deleterious(0.03) probably_damaging(0.975) TCGA-CN-6988-01 5 52211340 52211340 A T ITGA1 Missense_Mutation p.Q635L 0.77 deleterious(0.01) benign(0.076) TCGA-CN-6988-01 5 64960485 64960485 T C TRAPPC13 3'UTR 0.27 TCGA-CN-6988-01 5 80366391 80366391 G T RASGRF2 Missense_Mutation p.K208N 0.41 deleterious(0.04) possibly_damaging(0.77) TCGA-CN-6988-01 5 88018719 88018719 G C MEF2C Missense_Mutation p.S385C 0.38 tolerated(0.23) benign(0.018) TCGA-CN-6988-01 6 111689002 111689002 A T REV3L Missense_Mutation p.C1997S 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-CN-6988-01 6 129670496 129670496 G A LAMA2 Missense_Mutation p.C1497Y 0.35 deleterious(0) probably_damaging(0.971) TCGA-CN-6988-01 6 130762658 130762658 C G TMEM200A Missense_Mutation p.A364G 0.35 tolerated(0.46) benign(0.024) TCGA-CN-6988-01 6 131277410 131277410 C A EPB41L2 Missense_Mutation p.R72S 0.32 deleterious(0) probably_damaging(0.957) TCGA-CN-6988-01 6 132619016 132619016 C G MOXD1 Missense_Mutation p.W529C 0.34 deleterious(0) probably_damaging(0.999) TCGA-CN-6988-01 6 138734184 138734184 A C HEBP2 Missense_Mutation p.Q196P 0.46 tolerated(0.08) possibly_damaging(0.669) TCGA-CN-6988-01 6 143095631 143095631 T G HIVEP2 Missense_Mutation p.K82T 0.35 tolerated(0.2) possibly_damaging(0.448) TCGA-CN-6988-01 6 36767826 36767826 C T CPNE5 Missense_Mutation p.D69N 0.22 tolerated(0.28) possibly_damaging(0.746) TCGA-CN-6988-01 6 39285582 39285582 C A KCNK16 Missense_Mutation p.D159Y 0.53 tolerated(0.07) possibly_damaging(0.452) TCGA-CN-6988-01 6 46849211 46849211 G T GPR116 Silent p.S265S 0.28 TCGA-CN-6988-01 6 6266819 6266819 C T F13A1 Silent p.T181T 0.25 TCGA-CN-6988-01 7 103214584 103214584 C A RELN Missense_Mutation p.G1489V 0.81 deleterious(0) probably_damaging(1) TCGA-CN-6988-01 7 154664386 154664386 C A DPP6 Nonsense_Mutation p.Y622* 0.55 TCGA-CN-6988-01 7 7412808 7412808 C T COL28A1 Missense_Mutation p.R910H 0.33 deleterious(0) probably_damaging(0.915) TCGA-CN-6988-01 7 77212881 77212881 G A PTPN12 Missense_Mutation p.G99R 0.40 deleterious(0.01) benign(0.108) TCGA-CN-6988-01 7 87179361 87179361 C T ABCB1 Missense_Mutation p.D454N 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-CN-6988-01 7 98501107 98501107 G T TRRAP Missense_Mutation p.A335S 0.34 benign(0.364) TCGA-CN-6988-01 8 103358499 103358499 C A UBR5 Missense_Mutation p.G234V 0.40 tolerated(0.16) probably_damaging(0.996) TCGA-CN-6988-01 8 17611420 17611431 ACGCAGAAACGG - MTUS1 In_Frame_Del p.S629_A632del 0.26 TCGA-CN-6988-01 8 24167753 24167753 T A ADAM28 Missense_Mutation p.M102K 0.18 tolerated(0.54) possibly_damaging(0.719) TCGA-CN-6988-01 8 25720221 25720231 TTACCTTAGCT - EBF2 Splice_Site p.X364_splice 0.19 TCGA-CN-6988-01 8 27145584 27145584 G C TRIM35 Missense_Mutation p.T322S 0.23 tolerated(0.24) benign(0.033) TCGA-CN-6988-01 8 38092023 38092023 G A DDHD2 Missense_Mutation p.R111K 0.31 deleterious(0.03) possibly_damaging(0.626) TCGA-CN-6988-01 8 59358527 59358527 A C UBXN2B Missense_Mutation p.N245H 0.26 deleterious(0.01) possibly_damaging(0.534) TCGA-CN-6988-01 8 61764637 61764637 C A CHD7 Missense_Mutation p.L1909M 0.40 probably_damaging(0.997) TCGA-CN-6988-01 8 74858964 74858964 C T TCEB1 Silent p.K80K 0.47 TCGA-CN-6988-01 9 100222478 100222478 G T TDRD7 Missense_Mutation p.G292C 0.19 deleterious(0.01) possibly_damaging(0.681) TCGA-CN-6988-01 9 100222479 100222479 G T TDRD7 Missense_Mutation p.G292V 0.19 deleterious(0.03) benign(0.193) TCGA-CN-6988-01 9 140137531 140137531 C T TUBB4B Silent p.P287P 0.54 TCGA-CN-6988-01 9 35079225 35079225 G C FANCG Missense_Mutation p.S33C 0.44 tolerated(0.14) possibly_damaging(0.711) TCGA-CN-6988-01 9 73424985 73424985 A T TRPM3 Intron 0.30 TCGA-CN-6988-01 X 110435821 110435821 C A PAK3 Missense_Mutation p.P359T 0.50 deleterious(0.03) benign(0.406) TCGA-CN-6988-01 X 12736659 12736659 G T FRMPD4 Silent p.P1238P 0.75 TCGA-CN-6988-01 X 130409178 130409178 C G IGSF1 Silent p.G1094G 0.88 TCGA-CN-6988-01 X 132161248 132161248 G T USP26 Missense_Mutation p.P334H 0.88 deleterious(0) probably_damaging(0.995) TCGA-CN-6988-01 X 148048568 148048568 C A AFF2 Missense_Mutation p.S1054R 0.87 deleterious(0.03) possibly_damaging(0.873) TCGA-CN-6989-01 10 104837029 104837029 C T CNNM2 3'UTR 0.30 TCGA-CN-6989-01 10 18289628 18289628 C T SLC39A12 Silent p.L545L 0.24 TCGA-CN-6989-01 11 123847523 123847523 G T OR10S1 Silent p.I292I 0.30 TCGA-CN-6989-01 11 130281312 130281312 C T ADAMTS8 Missense_Mutation p.G584R 0.28 deleterious(0.03) benign(0.133) TCGA-CN-6989-01 11 4510853 4510853 G A OR52K1 Silent p.G241G 0.31 TCGA-CN-6989-01 11 47741494 47741494 G A FNBP4 Nonsense_Mutation p.Q984* 0.15 TCGA-CN-6989-01 11 56043788 56043788 T C OR5T1 Missense_Mutation p.I225T 0.31 tolerated(0.2) benign(0.26) TCGA-CN-6989-01 11 70319378 70319378 C G SHANK2 Missense_Mutation p.E1717Q 0.06 deleterious(0.04) benign(0.403) TCGA-CN-6989-01 11 70332717 70332717 C A SHANK2 Missense_Mutation p.M1228I 0.05 tolerated(0.07) benign(0.019) TCGA-CN-6989-01 12 10313470 10313470 G A OLR1 Missense_Mutation p.S160L 0.25 tolerated(0.07) possibly_damaging(0.546) TCGA-CN-6989-01 12 104725379 104725379 A G TXNRD1 Missense_Mutation p.E537G 0.14 deleterious(0) probably_damaging(1) TCGA-CN-6989-01 12 118467588 118467588 C G RFC5 Missense_Mutation p.S295C 0.16 deleterious(0.01) benign(0.031) TCGA-CN-6989-01 12 122839067 122839067 G A CLIP1 Nonsense_Mutation p.R414* 0.16 TCGA-CN-6989-01 12 26808652 26808652 G A ITPR2 Silent p.L860L 0.24 TCGA-CN-6989-01 12 51883736 51883736 G A SLC4A8 Splice_Site p.X900_splice 0.14 TCGA-CN-6989-01 12 54576251 54576251 G T SMUG1 Missense_Mutation p.L148I 0.12 tolerated(0.07) possibly_damaging(0.815) TCGA-CN-6989-01 12 69158675 69158675 G A SLC35E3 3'UTR 0.12 TCGA-CN-6989-01 12 85421708 85421708 A G TSPAN19 Missense_Mutation p.I78T 0.19 tolerated(1) benign(0.158) TCGA-CN-6989-01 13 111371619 111371619 C T ING1 Silent p.R203R 0.11 TCGA-CN-6989-01 13 32798468 32798468 C A FRY Missense_Mutation p.A1621D 0.26 deleterious(0) probably_damaging(0.951) TCGA-CN-6989-01 14 60622827 60622827 C T DHRS7 Silent p.S59S 0.11 TCGA-CN-6989-01 15 65490732 65490732 T C CILP Missense_Mutation p.N631S 0.30 deleterious(0.01) benign(0.075) TCGA-CN-6989-01 15 73766183 73766183 C G C15orf60 Missense_Mutation p.S57C 0.45 deleterious(0) possibly_damaging(0.73) TCGA-CN-6989-01 15 75981392 75981392 G A CSPG4 Nonsense_Mutation p.R672* 0.13 TCGA-CN-6989-01 15 90226795 90226795 C T PEX11A Missense_Mutation p.R186Q 0.14 tolerated(0.89) benign(0.007) TCGA-CN-6989-01 16 23117561 23117561 G A USP31 Missense_Mutation p.S309F 0.14 deleterious(0) probably_damaging(1) TCGA-CN-6989-01 16 80654799 80654799 C T CDYL2 Missense_Mutation p.A290T 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-CN-6989-01 17 11572997 11572997 T G DNAH9 Missense_Mutation p.V1080G 0.11 benign(0.197) TCGA-CN-6989-01 17 29586061 29586061 T A NF1 Missense_Mutation p.S1448R 0.20 deleterious(0) probably_damaging(0.993) TCGA-CN-6989-01 17 30349724 30349724 T G LRRC37B Missense_Mutation p.I520R 0.25 deleterious(0) possibly_damaging(0.781) TCGA-CN-6989-01 17 42288993 42288993 T C UBTF Missense_Mutation p.Y343C 0.19 deleterious(0) probably_damaging(0.989) TCGA-CN-6989-01 17 44626341 44626341 T C LRRC37A2 Missense_Mutation p.I1279T 0.15 deleterious(0) benign(0.118) TCGA-CN-6989-01 17 4594214 4594214 G C PELP1 Missense_Mutation p.S130C 0.15 probably_damaging(0.999) TCGA-CN-6989-01 17 55196358 55196358 C T AKAP1 Missense_Mutation p.P864S 0.21 tolerated(0.24) benign(0.01) TCGA-CN-6989-01 17 66536060 66536060 C T FAM20A Missense_Mutation p.D423N 0.13 tolerated(0.21) benign(0.12) TCGA-CN-6989-01 17 7577516 7577517 - A TP53 Frame_Shift_Ins p.T256Hfs*8 0.28 TCGA-CN-6989-01 18 25532209 25532209 T G CDH2 Missense_Mutation p.S877R 0.13 deleterious(0) probably_damaging(0.999) TCGA-CN-6989-01 18 2673310 2673310 C G SMCHD1 Nonsense_Mutation p.S152* 0.25 TCGA-CN-6989-01 18 29867548 29867548 C T GAREM Missense_Mutation p.E338K 0.11 deleterious(0.01) probably_damaging(0.926) TCGA-CN-6989-01 18 31538215 31538215 C T NOL4 Silent p.L408L 0.31 TCGA-CN-6989-01 18 32887551 32887551 C T ZNF271 RNA 0.29 TCGA-CN-6989-01 19 10203335 10203335 C G ANGPTL6 Missense_Mutation p.W448S 0.25 deleterious(0) probably_damaging(1) TCGA-CN-6989-01 19 1556787 1556787 G T MEX3D Missense_Mutation p.A244D 0.28 deleterious(0) possibly_damaging(0.448) TCGA-CN-6989-01 19 1556788 1556788 C T MEX3D Missense_Mutation p.A244T 0.24 deleterious(0) possibly_damaging(0.546) TCGA-CN-6989-01 19 32930743 32930743 A G DPY19L3 Missense_Mutation p.N261S 0.35 tolerated(0.74) possibly_damaging(0.531) TCGA-CN-6989-01 19 35233035 35233035 C G ZNF181 3'UTR 0.13 TCGA-CN-6989-01 19 56734095 56734095 G A ZSCAN5A Silent p.L202L 0.19 TCGA-CN-6989-01 19 8841649 8841649 C T OR2Z1 Missense_Mutation p.R87W 0.20 tolerated(0.06) benign(0.394) TCGA-CN-6989-01 19 9272240 9272240 C G ZNF317 3'UTR 0.18 TCGA-CN-6989-01 1 120512221 120512221 C A NOTCH2 Missense_Mutation p.D341Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-6989-01 1 152282297 152282297 C G FLG Missense_Mutation p.A1689P 0.27 possibly_damaging(0.887) TCGA-CN-6989-01 1 154961254 154961254 G A FLAD1 Missense_Mutation p.G349E 0.15 tolerated(0.06) benign(0.074) TCGA-CN-6989-01 1 171549100 171549100 A G PRRC2C Missense_Mutation p.Y2467C 0.13 probably_damaging(0.998) TCGA-CN-6989-01 1 211843718 211843718 G C NEK2 Missense_Mutation p.L224V 0.08 deleterious(0) probably_damaging(0.982) TCGA-CN-6989-01 1 229794895 229794895 C T URB2 Missense_Mutation p.L1476F 0.30 deleterious(0.05) probably_damaging(0.993) TCGA-CN-6989-01 1 28144385 28144385 G A STX12 Silent p.Q200Q 0.20 TCGA-CN-6989-01 1 2939015 2939015 G A ACTRT2 Silent p.P255P 0.16 TCGA-CN-6989-01 1 57340684 57340684 C A C8A Silent p.I78I 0.36 TCGA-CN-6989-01 1 78098454 78098454 T C ZZZ3 Missense_Mutation p.I196V 0.09 tolerated(0.62) benign(0) TCGA-CN-6989-01 20 20054956 20054956 C G C20orf26 Missense_Mutation p.T102R 0.22 deleterious(0) probably_damaging(0.994) TCGA-CN-6989-01 20 23731396 23731396 G T CST1 Missense_Mutation p.N36K 0.11 tolerated(0.06) benign(0.003) TCGA-CN-6989-01 20 34057913 34057913 G A CEP250 Intron 0.25 TCGA-CN-6989-01 20 44519120 44519120 G C NEURL2 Missense_Mutation p.L171V 0.10 tolerated(0.19) benign(0.071) TCGA-CN-6989-01 20 47704564 47704564 C A CSE1L Missense_Mutation p.S581Y 0.26 tolerated(0.44) possibly_damaging(0.862) TCGA-CN-6989-01 20 54578941 54578941 T G CBLN4 Missense_Mutation p.D96A 0.14 deleterious(0.01) possibly_damaging(0.755) TCGA-CN-6989-01 20 60711832 60711832 A T PSMA7 3'UTR 0.21 TCGA-CN-6989-01 21 28307044 28307044 C A ADAMTS5 Missense_Mutation p.R477L 0.14 tolerated(0.14) benign(0.118) TCGA-CN-6989-01 21 34624976 34624976 G A IFNAR2 Missense_Mutation p.E184K 0.30 tolerated(1) benign(0) TCGA-CN-6989-01 22 31679217 31679217 T A PIK3IP1 Silent p.R215R 0.16 TCGA-CN-6989-01 22 34157394 34157394 T C LARGE Missense_Mutation p.I24V 0.19 tolerated_low_confidence(0.21) benign(0) TCGA-CN-6989-01 22 41605609 41605609 G A L3MBTL2 Intron 0.08 TCGA-CN-6989-01 22 50727227 50727227 C T PLXNB2 Missense_Mutation p.R442H 0.18 tolerated(0.11) benign(0.019) TCGA-CN-6989-01 2 108479435 108479435 G A RGPD4 Missense_Mutation p.E806K 0.22 tolerated(0.06) possibly_damaging(0.636) TCGA-CN-6989-01 2 109382140 109382140 C T RANBP2 Silent p.S1715S 0.15 TCGA-CN-6989-01 2 128471233 128471233 C T WDR33 Missense_Mutation p.E1078K 0.19 deleterious_low_confidence(0.01) benign(0.092) TCGA-CN-6989-01 2 145147391 145147391 G T ZEB2 Missense_Mutation p.A1091E 0.15 deleterious(0.03) benign(0.191) TCGA-CN-6989-01 2 179669322 179669322 C T TTN Silent p.V16V 0.19 TCGA-CN-6989-01 2 206562314 206562314 C T NRP2 Silent p.I40I 0.14 TCGA-CN-6989-01 2 225376090 225376090 C T CUL3 Silent p.L288L 0.17 TCGA-CN-6989-01 2 225378279 225378279 C G CUL3 Missense_Mutation p.E206Q 0.18 deleterious(0) probably_damaging(1) TCGA-CN-6989-01 2 27352690 27352690 C T ABHD1 Missense_Mutation p.S229F 0.15 deleterious(0) probably_damaging(0.994) TCGA-CN-6989-01 2 43801884 43801884 C T THADA Silent p.L440L 0.28 TCGA-CN-6989-01 3 1367528 1367528 A T CNTN6 Missense_Mutation p.N326Y 0.22 deleterious(0) probably_damaging(0.925) TCGA-CN-6989-01 3 150128558 150128558 G A TSC22D2 Missense_Mutation p.G474E 0.11 deleterious(0) probably_damaging(0.931) TCGA-CN-6989-01 3 151101967 151101967 G T MED12L Missense_Mutation p.E1594D 0.53 tolerated(0.12) benign(0.408) TCGA-CN-6989-01 3 160150162 160150162 A - SMC4 Frame_Shift_Del p.R1131Gfs*11 0.27 TCGA-CN-6989-01 3 164737435 164737435 C T SI Silent p.L1126L 0.18 TCGA-CN-6989-01 3 164777770 164777770 G T SI Missense_Mutation p.Q356K 0.09 deleterious(0) probably_damaging(1) TCGA-CN-6989-01 3 179051488 179051488 A G ZNF639 Missense_Mutation p.M246V 0.27 tolerated(0.41) benign(0.001) TCGA-CN-6989-01 3 179082965 179082965 C T MFN1 Silent p.L235L 0.06 TCGA-CN-6989-01 3 46307687 46307687 A T CCR3 Silent p.T367T 0.35 TCGA-CN-6989-01 4 120177469 120177469 A G USP53 Silent p.K147K 0.29 TCGA-CN-6989-01 4 177143474 177143474 G C ASB5 Missense_Mutation p.A125G 0.11 tolerated(0.24) possibly_damaging(0.816) TCGA-CN-6989-01 4 187557927 187557927 G A FAT1 Nonsense_Mutation p.R1262* 0.41 TCGA-CN-6989-01 4 68499067 68499067 T C UBA6 Missense_Mutation p.H713R 0.26 tolerated(0.17) benign(0.119) TCGA-CN-6989-01 4 71063726 71063726 C A ODAM Missense_Mutation p.S76Y 0.26 deleterious(0.03) probably_damaging(0.919) TCGA-CN-6989-01 4 94411922 94411922 C T GRID2 Missense_Mutation p.S664F 0.22 deleterious(0) possibly_damaging(0.89) TCGA-CN-6989-01 5 140263131 140263131 C T PCDHA13 Silent p.T426T 0.17 TCGA-CN-6989-01 5 140616079 140616079 G A PCDHB18 RNA 0.17 TCGA-CN-6989-01 5 145836812 145836812 G A TCERG1 Missense_Mutation p.G118R 0.17 deleterious(0.01) probably_damaging(0.953) TCGA-CN-6989-01 5 156934146 156934146 C T ADAM19 Missense_Mutation p.G303D 0.05 deleterious(0) probably_damaging(1) TCGA-CN-6989-01 5 172517748 172517748 A G CREBRF Missense_Mutation p.K189R 0.24 tolerated_low_confidence(0.28) possibly_damaging(0.584) TCGA-CN-6989-01 5 174870146 174870146 T C DRD1 5'UTR 0.30 TCGA-CN-6989-01 5 179669687 179669687 G T MAPK9 Missense_Mutation p.Q253K 0.10 tolerated(0.09) benign(0.151) TCGA-CN-6989-01 5 44813292 44813292 G A MRPS30 Missense_Mutation p.R313K 0.09 tolerated(1) benign(0.001) TCGA-CN-6989-01 5 81571952 81571952 G A RPS23 Silent p.G136G 0.10 TCGA-CN-6989-01 5 81571953 81571953 C T RPS23 Missense_Mutation p.G136D 0.10 deleterious(0.04) benign(0.089) TCGA-CN-6989-01 5 9054270 9054270 G - SEMA5A Frame_Shift_Del p.P873Rfs*86 0.16 TCGA-CN-6989-01 6 153365154 153365154 T A RGS17 5'UTR 0.13 TCGA-CN-6989-01 6 44217786 44217786 G A HSP90AB1 Silent p.V181V 0.21 TCGA-CN-6989-01 6 47563619 47563619 G A CD2AP Silent p.Q377Q 0.12 TCGA-CN-6989-01 6 50810853 50810853 G A TFAP2B Silent p.P377P 0.31 TCGA-CN-6989-01 6 8102741 8102741 G A EEF1E1 Missense_Mutation p.A5V 0.10 tolerated_low_confidence(0.22) unknown(0) TCGA-CN-6989-01 7 100484783 100484783 G A SRRT Missense_Mutation p.R646Q 0.12 deleterious(0) probably_damaging(0.988) TCGA-CN-6989-01 7 124404598 124404598 A T GPR37 Missense_Mutation p.F145I 0.10 tolerated_low_confidence(0.06) benign(0.014) TCGA-CN-6989-01 7 138239468 138239468 G T TRIM24 Missense_Mutation p.E429D 0.08 tolerated(0.23) benign(0.003) TCGA-CN-6989-01 7 138239469 138239469 A T TRIM24 Missense_Mutation p.S430C 0.09 tolerated(0.17) possibly_damaging(0.662) TCGA-CN-6989-01 7 72987687 72987687 G A TBL2 Silent p.H187H 0.18 TCGA-CN-6989-01 7 87913481 87913481 C T STEAP4 Missense_Mutation p.G35E 0.09 deleterious(0) probably_damaging(0.969) TCGA-CN-6989-01 8 110980374 110980374 C T KCNV1 Silent p.L482L 0.20 TCGA-CN-6989-01 8 22429318 22429318 C T SORBS3 Nonsense_Mutation p.Q611* 0.12 TCGA-CN-6989-01 8 82713776 82713776 C T SNX16 Missense_Mutation p.E331K 0.04 deleterious_low_confidence(0.02) benign(0) TCGA-CN-6989-01 8 90937792 90937792 T G OSGIN2 3'UTR 0.21 TCGA-CN-6989-01 9 112898859 112898859 C T PALM2-AKAP2 Silent p.H345H 0.11 TCGA-CN-6989-01 9 139407980 139407980 G T NOTCH1 Nonsense_Mutation p.C739* 0.61 TCGA-CN-6989-01 9 139700898 139700898 C A CCDC183 Intron 0.10 TCGA-CN-6989-01 9 94794722 94794722 G A SPTLC1 3'UTR 0.22 TCGA-CN-6989-01 9 94794749 94794749 A G SPTLC1 Nonstop_Mutation p.*474Qext*27 0.19 TCGA-CN-6989-01 X 101092616 101092616 C T NXF5 Silent p.R310R 0.06 TCGA-CN-6989-01 X 79286052 79286052 G T TBX22 Missense_Mutation p.L335F 0.44 tolerated(0.17) probably_damaging(0.965) TCGA-CN-6992-01 10 105162964 105162964 C A PDCD11 Silent p.G108G 0.37 TCGA-CN-6992-01 10 115526201 115526201 A C PLEKHS1 Missense_Mutation p.E14D 0.12 tolerated(0.31) probably_damaging(0.992) TCGA-CN-6992-01 10 125530532 125530532 C T CPXM2 Missense_Mutation p.M334I 0.13 deleterious(0.02) possibly_damaging(0.844) TCGA-CN-6992-01 10 13222601 13222601 G T MCM10 Silent p.V309V 0.31 TCGA-CN-6992-01 10 134598892 134598892 G T NKX6-2 Silent p.G157G 0.47 TCGA-CN-6992-01 10 135015044 135015044 C G KNDC1 Missense_Mutation p.A1010G 0.16 tolerated(0.56) benign(0.005) TCGA-CN-6992-01 10 135053843 135053843 T A VENTX 3'UTR 0.23 TCGA-CN-6992-01 10 17199734 17199734 G T TRDMT1 Missense_Mutation p.A198E 0.44 tolerated(0.64) benign(0.008) TCGA-CN-6992-01 10 18807304 18807304 C A CACNB2 Silent p.R282R 0.33 TCGA-CN-6992-01 10 27538165 27538165 A T RP11-85G18.6 Intron 0.40 TCGA-CN-6992-01 10 37430667 37430667 C A ANKRD30A Missense_Mutation p.P225H 0.24 tolerated(0.18) possibly_damaging(0.769) TCGA-CN-6992-01 10 37455554 37455554 C A ANKRD30A Missense_Mutation p.Q640K 0.14 deleterious(0.05) benign(0.005) TCGA-CN-6992-01 10 45799384 45799384 C A OR13A1 Missense_Mutation p.A163S 0.33 deleterious(0.04) benign(0.395) TCGA-CN-6992-01 10 50819675 50819675 G A SLC18A3 Missense_Mutation p.A297T 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-CN-6992-01 10 52619639 52619639 C T A1CF 5'UTR 0.37 TCGA-CN-6992-01 10 63212740 63212740 G T TMEM26 Missense_Mutation p.P34T 0.31 tolerated(0.08) possibly_damaging(0.876) TCGA-CN-6992-01 10 6521108 6521108 T A PRKCQ Missense_Mutation p.K400M 0.35 deleterious(0.03) possibly_damaging(0.758) TCGA-CN-6992-01 10 69935118 69935118 C T MYPN Missense_Mutation p.P868L 0.38 tolerated(0.49) benign(0.001) TCGA-CN-6992-01 10 70246946 70246946 C T SLC25A16 Missense_Mutation p.R266Q 0.28 deleterious(0) probably_damaging(0.979) TCGA-CN-6992-01 10 71913632 71913632 G A SAR1A Missense_Mutation p.R148C 0.14 deleterious(0.01) possibly_damaging(0.568) TCGA-CN-6992-01 10 7239525 7239525 C G SFMBT2 Silent p.V561V 0.34 TCGA-CN-6992-01 10 78674745 78674745 G A KCNMA1 Missense_Mutation p.R972C 0.11 deleterious(0.01) possibly_damaging(0.54) TCGA-CN-6992-01 10 8100668 8100668 G - GATA3 Frame_Shift_Del p.T215Pfs*51 0.27 TCGA-CN-6992-01 10 86017674 86017674 C A RGR Missense_Mutation p.T223K 0.22 deleterious(0) possibly_damaging(0.789) TCGA-CN-6992-01 10 97050586 97050586 G A PDLIM1 Silent p.A29A 0.27 TCGA-CN-6992-01 10 98714903 98714903 G A LCOR Missense_Mutation p.G176R 0.42 tolerated(0.22) benign(0.026) TCGA-CN-6992-01 11 111796859 111796859 A G C11orf52 Missense_Mutation p.Y103C 0.62 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 11 115049407 115049407 C G CADM1 Silent p.L389L 0.53 TCGA-CN-6992-01 11 119003446 119003446 G T HINFP Missense_Mutation p.R277L 0.57 deleterious(0) probably_damaging(0.999) TCGA-CN-6992-01 11 120989055 120989055 G A TECTA Silent p.L277L 0.51 TCGA-CN-6992-01 11 126301325 126301325 C A KIRREL3 Missense_Mutation p.R562L 0.55 deleterious(0.02) possibly_damaging(0.743) TCGA-CN-6992-01 11 14496152 14496152 C G COPB1 Missense_Mutation p.L542F 0.19 deleterious(0.01) benign(0.417) TCGA-CN-6992-01 11 18057644 18057644 T C TPH1 Missense_Mutation p.R55G 0.48 deleterious(0.04) possibly_damaging(0.486) TCGA-CN-6992-01 11 18194671 18194671 C A MRGPRX4 5'UTR 0.35 TCGA-CN-6992-01 11 18194672 18194672 C A MRGPRX4 5'UTR 0.38 TCGA-CN-6992-01 11 19256552 19256556 TATGT - E2F8 Frame_Shift_Del p.L167Ffs*33 0.31 TCGA-CN-6992-01 11 22301227 22301227 G T ANO5 Missense_Mutation p.E886D 0.28 tolerated(0.07) benign(0.055) TCGA-CN-6992-01 11 26734190 26734190 T A SLC5A12 Missense_Mutation p.T135S 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-CN-6992-01 11 36595801 36595801 G T RAG1 Missense_Mutation p.C316F 0.51 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-6992-01 11 43428727 43428727 G T TTC17 Nonsense_Mutation p.E601* 0.43 TCGA-CN-6992-01 11 4936073 4936073 G T OR51G2 Missense_Mutation p.P274H 0.63 tolerated(0.08) probably_damaging(0.971) TCGA-CN-6992-01 11 49805443 49805443 C T RP11-707M1.1 RNA 0.46 TCGA-CN-6992-01 11 5013232 5013232 C A MMP26 Missense_Mutation p.H212N 0.13 deleterious(0) probably_damaging(0.999) TCGA-CN-6992-01 11 5345007 5345007 C A OR51B2 Missense_Mutation p.R174L 0.65 deleterious(0) benign(0.072) TCGA-CN-6992-01 11 5373354 5373354 T C OR51B6 Missense_Mutation p.L206S 0.41 deleterious(0.02) possibly_damaging(0.568) TCGA-CN-6992-01 11 55340173 55340173 C A OR4C16 Silent p.T190T 0.41 TCGA-CN-6992-01 11 57428441 57428441 C T CLP1 Missense_Mutation p.P271S 0.34 deleterious(0.02) benign(0.217) TCGA-CN-6992-01 11 59189605 59189605 C A OR5A2 Silent p.V274V 0.64 TCGA-CN-6992-01 11 62948160 62948160 T C SLC22A25 Missense_Mutation p.K348E 0.62 tolerated(0.18) benign(0.178) TCGA-CN-6992-01 11 6661270 6661270 G T DCHS1 Silent p.P525P 0.56 TCGA-CN-6992-01 11 66619265 66619265 A T PC Missense_Mutation p.F660I 0.39 tolerated(0.31) benign(0.093) TCGA-CN-6992-01 11 77413134 77413134 G A RSF1 Silent p.A380A 0.43 TCGA-CN-6992-01 12 100904813 100904813 C A NR1H4 Missense_Mutation p.R123S 0.28 deleterious(0) possibly_damaging(0.571) TCGA-CN-6992-01 12 110236583 110236583 C T TRPV4 Missense_Mutation p.A330T 0.32 tolerated(0.5) benign(0.035) TCGA-CN-6992-01 12 112512522 112512522 G A NAA25 Nonsense_Mutation p.R275* 0.16 TCGA-CN-6992-01 12 114261020 114261020 G A RBM19 3'UTR 0.18 TCGA-CN-6992-01 12 11546608 11546608 G T PRB2 Missense_Mutation p.P135H 0.30 tolerated(0.56) unknown(0) TCGA-CN-6992-01 12 118590137 118590137 G A TAOK3 Silent p.N810N 0.43 TCGA-CN-6992-01 12 119978426 119978426 G A CCDC60 Missense_Mutation p.R520Q 0.12 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 12 120650198 120650198 G C PXN Silent p.L579L 0.09 TCGA-CN-6992-01 12 124857047 124857066 GTCGGCGCCCAGGGTGGCTG - NCOR2 Frame_Shift_Del p.P770Rfs*19 0.25 TCGA-CN-6992-01 12 14578009 14578009 C G ATF7IP Missense_Mutation p.S387C 0.15 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-CN-6992-01 12 22063217 22063217 G T ABCC9 Silent p.L398L 0.12 TCGA-CN-6992-01 12 31542309 31542309 C T DENND5B Missense_Mutation p.R1197K 0.32 tolerated(0.11) probably_damaging(0.909) TCGA-CN-6992-01 12 4919476 4919476 G A KCNA6 Missense_Mutation p.R90Q 0.44 deleterious(0) probably_damaging(0.993) TCGA-CN-6992-01 12 50035774 50035774 G A PRPF40B Silent p.L617L 0.18 TCGA-CN-6992-01 12 50036073 50036073 G A PRPF40B Missense_Mutation p.R647K 0.19 tolerated(1) benign(0.051) TCGA-CN-6992-01 12 52078000 52078000 A G SCN8A Missense_Mutation p.S107G 0.35 deleterious(0) probably_damaging(0.974) TCGA-CN-6992-01 12 53925601 53925601 A G ATF7 Missense_Mutation p.M285T 0.35 tolerated(0.08) benign(0.262) TCGA-CN-6992-01 12 6438763 6438763 G A TNFRSF1A Silent p.A361A 0.15 TCGA-CN-6992-01 12 66814550 66814550 T A GRIP1 Silent p.P544P 0.34 TCGA-CN-6992-01 12 71286643 71286643 G T PTPRR Missense_Mutation p.P58Q 0.30 tolerated_low_confidence(0.16) benign(0.021) TCGA-CN-6992-01 12 88374039 88374039 C T C12orf50 3'UTR 0.33 TCGA-CN-6992-01 12 89745563 89745563 C A DUSP6 Missense_Mutation p.R85L 0.27 tolerated(0.14) benign(0.045) TCGA-CN-6992-01 12 990928 990928 C T WNK1 Missense_Mutation p.P1061L 0.17 tolerated(0.06) benign(0.014) TCGA-CN-6992-01 12 99223121 99223121 C A ANKS1B Missense_Mutation p.G966V 0.35 tolerated(0.37) benign(0.119) TCGA-CN-6992-01 12 99223122 99223122 C A ANKS1B Missense_Mutation p.G966C 0.35 tolerated(0.56) benign(0.074) TCGA-CN-6992-01 13 101762992 101762992 G T NALCN Missense_Mutation p.S781Y 0.27 tolerated(0.06) benign(0.01) TCGA-CN-6992-01 13 109379876 109379876 C A MYO16 Missense_Mutation p.P129H 0.35 deleterious(0) probably_damaging(0.987) TCGA-CN-6992-01 13 23909308 23909308 C A SACS Missense_Mutation p.V2903F 0.35 probably_damaging(0.997) TCGA-CN-6992-01 13 35735894 35735894 A T NBEA Missense_Mutation p.Q1290L 0.24 tolerated_low_confidence(0.14) benign(0.023) TCGA-CN-6992-01 13 53624258 53624258 A T OLFM4 Silent p.T295T 0.38 TCGA-CN-6992-01 13 73320896 73320896 G A BORA Missense_Mutation p.A377T 0.32 tolerated(0.4) benign(0.3) TCGA-CN-6992-01 13 75936702 75936702 C T TBC1D4 Silent p.A180A 0.31 TCGA-CN-6992-01 13 98642692 98642692 G A IPO5 Silent p.R208R 0.29 TCGA-CN-6992-01 13 98828638 98828638 G A RNF113B Missense_Mutation p.R285W 0.17 deleterious(0) probably_damaging(0.978) TCGA-CN-6992-01 14 101498379 101498379 C T MIR543 RNA 0.55 TCGA-CN-6992-01 14 101530856 101530856 C T MIR541 RNA 0.53 TCGA-CN-6992-01 14 106471641 106471641 G A IGHV1-3 Missense_Mutation p.A14V 0.52 tolerated(0.19) benign(0.11) TCGA-CN-6992-01 14 23870013 23870013 A T MYH6 Missense_Mutation p.W439R 0.37 deleterious(0) probably_damaging(0.993) TCGA-CN-6992-01 14 24877130 24877130 C T NYNRIN Missense_Mutation p.P85L 0.18 deleterious_low_confidence(0.01) benign(0.44) TCGA-CN-6992-01 14 57866573 57866573 A G NAA30 Missense_Mutation p.Y308C 0.51 deleterious(0) possibly_damaging(0.474) TCGA-CN-6992-01 14 61519120 61519120 C G SLC38A6 Intron 0.31 TCGA-CN-6992-01 14 74531880 74531880 G A ALDH6A1 Intron 0.17 TCGA-CN-6992-01 14 79933568 79933568 C T NRXN3 Silent p.G716G 0.22 TCGA-CN-6992-01 15 23931618 23931618 G A NDN Silent p.R249R 0.47 TCGA-CN-6992-01 15 24921238 24921238 C A NPAP1 Missense_Mutation p.P75H 0.24 tolerated(0.14) probably_damaging(0.95) TCGA-CN-6992-01 15 24923722 24923722 C A NPAP1 Missense_Mutation p.A903D 0.44 tolerated(0.07) possibly_damaging(0.763) TCGA-CN-6992-01 15 25213119 25213119 C A SNURF Missense_Mutation p.P51T 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.655) TCGA-CN-6992-01 15 25940151 25940151 C T ATP10A Missense_Mutation p.R968H 0.12 tolerated(0.27) benign(0.001) TCGA-CN-6992-01 15 29406125 29406125 G T APBA2 Missense_Mutation p.R695L 0.37 deleterious(0) possibly_damaging(0.511) TCGA-CN-6992-01 15 34521973 34521998 GAGGACTGCTTTTGTGAACATGAGAA - EMC4 Missense_Mutation 0.29 TCGA-CN-6992-01 15 41688684 41688684 C A NDUFAF1 Splice_Site p.X191_splice 0.32 TCGA-CN-6992-01 15 42168381 42168381 T A SPTBN5 Silent p.T1351T 0.27 TCGA-CN-6992-01 15 43910166 43910166 C A STRC Silent p.G151G 0.22 TCGA-CN-6992-01 15 54306698 54306698 C T UNC13C Missense_Mutation p.P533L 0.38 deleterious_low_confidence(0) benign(0.125) TCGA-CN-6992-01 15 57574756 57574756 G A TCF12 Missense_Mutation p.E698K 0.16 deleterious(0) benign(0.364) TCGA-CN-6992-01 15 65489842 65489842 G A CILP Missense_Mutation p.P928S 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-CN-6992-01 15 73621967 73621967 C T HCN4 Missense_Mutation p.A513T 0.16 deleterious(0.03) possibly_damaging(0.488) TCGA-CN-6992-01 15 74032915 74032915 C T C15orf59 Silent p.T75T 0.39 TCGA-CN-6992-01 15 79614649 79614649 G A TMED3 3'UTR 0.49 TCGA-CN-6992-01 15 86838537 86838537 C T AGBL1 Missense_Mutation p.R712W 0.11 deleterious(0) probably_damaging(0.99) TCGA-CN-6992-01 15 91162992 91162992 G A CRTC3 Missense_Mutation p.R240H 0.10 deleterious(0) possibly_damaging(0.523) TCGA-CN-6992-01 15 99434760 99434760 G A IGF1R Missense_Mutation p.A283T 0.13 tolerated(0.22) benign(0.38) TCGA-CN-6992-01 16 1884247 1884247 A G MEIOB 3'UTR 0.28 TCGA-CN-6992-01 16 31088376 31088376 G A ZNF646 Missense_Mutation p.C244Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-CN-6992-01 16 31308840 31308840 C T ITGAM Silent p.G454G 0.14 TCGA-CN-6992-01 16 48295405 48295405 A T LONP2 Missense_Mutation p.E265V 0.27 tolerated(0.05) possibly_damaging(0.828) TCGA-CN-6992-01 16 67574374 67574374 C T FAM65A Silent p.F235F 0.20 TCGA-CN-6992-01 16 75146544 75146544 G C LDHD Silent p.A438A 0.25 TCGA-CN-6992-01 17 11687739 11687739 C - DNAH9 Frame_Shift_Del p.P2650Hfs*2 0.28 TCGA-CN-6992-01 17 15942772 15942772 C G NCOR1 Missense_Mutation p.E2310D 0.21 benign(0.003) TCGA-CN-6992-01 17 16550702 16550702 C G ZNF624 Missense_Mutation p.E32Q 0.41 tolerated(0.08) benign(0.003) TCGA-CN-6992-01 17 38189629 38189629 G T MED24 Missense_Mutation p.Q214K 0.77 tolerated(0.97) benign(0.018) TCGA-CN-6992-01 17 39262084 39262084 C G KRTAP4-9 Missense_Mutation p.N148K 0.38 deleterious(0.01) unknown(0) TCGA-CN-6992-01 17 3966057 3966057 C T ZZEF1 Missense_Mutation p.D1625N 0.33 tolerated(0.12) possibly_damaging(0.687) TCGA-CN-6992-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.24 deleterious(0.01) possibly_damaging(0.655) TCGA-CN-6992-01 17 40705593 40705593 T C HSD17B1 Silent p.G134G 0.37 TCGA-CN-6992-01 17 61987419 61987419 G A CSHL1 Intron 0.28 TCGA-CN-6992-01 17 62021165 62021165 A T SCN4A Missense_Mutation p.Y1320N 0.39 deleterious(0) probably_damaging(0.964) TCGA-CN-6992-01 17 62135335 62135335 G C ERN1 Missense_Mutation p.Q409E 0.45 tolerated(1) benign(0.001) TCGA-CN-6992-01 17 7290420 7290420 A G TNK1 Silent p.P453P 0.25 TCGA-CN-6992-01 17 73214330 73214330 G A NUP85 Missense_Mutation p.E176K 0.10 tolerated(0.18) benign(0.329) TCGA-CN-6992-01 17 7576853 7576853 C A TP53 Missense_Mutation p.Q331H 0.32 tolerated(0.13) benign(0.052) TCGA-CN-6992-01 17 7577535 7577535 C A TP53 Missense_Mutation p.R249M 0.39 deleterious(0) probably_damaging(0.993) TCGA-CN-6992-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.23 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 17 76993210 76993210 C A CANT1 Missense_Mutation p.M165I 0.27 deleterious(0.01) possibly_damaging(0.845) TCGA-CN-6992-01 17 76993211 76993211 A T CANT1 Missense_Mutation p.M165K 0.26 deleterious(0) probably_damaging(0.992) TCGA-CN-6992-01 17 7727960 7727960 G A DNAH2 Missense_Mutation p.R3923H 0.10 possibly_damaging(0.906) TCGA-CN-6992-01 17 7762969 7762969 T G CYB5D1 3'UTR 0.29 TCGA-CN-6992-01 17 7918083 7918083 G T GUCY2D Splice_Site p.X859_splice 0.35 TCGA-CN-6992-01 18 13826521 13826521 C T MC5R Missense_Mutation p.P253S 0.43 deleterious(0) possibly_damaging(0.752) TCGA-CN-6992-01 18 19209150 19209150 G T SNRPD1 3'UTR 0.18 TCGA-CN-6992-01 18 25572629 25572629 G C CDH2 Missense_Mutation p.T445S 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-CN-6992-01 18 34376776 34376776 G A TPGS2 Missense_Mutation p.R299W 0.10 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-CN-6992-01 18 3597087 3597087 C A DLGAP1 Intron 0.32 TCGA-CN-6992-01 18 42531907 42531907 G T SETBP1 Missense_Mutation p.D868Y 0.64 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 18 5416002 5416002 G A EPB41L3 Missense_Mutation p.R628C 0.10 deleterious(0) possibly_damaging(0.656) TCGA-CN-6992-01 18 74625839 74625839 G A ZNF236 Missense_Mutation p.E1014K 0.45 tolerated(0.19) probably_damaging(0.982) TCGA-CN-6992-01 19 10893759 10893759 G T DNM2 Missense_Mutation p.R271L 0.29 tolerated(0.07) possibly_damaging(0.749) TCGA-CN-6992-01 19 12767762 12767762 C G MAN2B1 Splice_Site p.X509_splice 0.40 TCGA-CN-6992-01 19 12848400 12848400 A C ASNA1 Silent p.T27T 0.26 TCGA-CN-6992-01 19 16611661 16611661 G A C19orf44 Missense_Mutation p.D20N 0.34 deleterious(0.03) benign(0.164) TCGA-CN-6992-01 19 17688840 17688840 G A COLGALT1 Missense_Mutation p.R403Q 0.19 deleterious(0) probably_damaging(0.991) TCGA-CN-6992-01 19 18368176 18368176 G A KIAA1683 Silent p.A1306A 0.34 TCGA-CN-6992-01 19 18502779 18502779 G C LRRC25 3'UTR 0.23 TCGA-CN-6992-01 19 19166617 19166617 C A ARMC6 Nonsense_Mutation p.C391* 0.33 TCGA-CN-6992-01 19 19349086 19349086 G - NCAN Frame_Shift_Del p.W1092Cfs*32 0.31 TCGA-CN-6992-01 19 2216357 2216357 C T DOT1L Silent p.D667D 0.38 TCGA-CN-6992-01 19 22364105 22364105 C G ZNF676 Missense_Mutation p.E138D 0.09 deleterious(0.03) benign(0.037) TCGA-CN-6992-01 19 2993528 2993528 C T TLE6 Silent p.H495H 0.24 TCGA-CN-6992-01 19 36832353 36832353 G T ZFP14 Nonsense_Mutation p.C125* 0.16 TCGA-CN-6992-01 19 37005104 37005104 G A ZNF260 Missense_Mutation p.S346F 0.25 tolerated(0.12) probably_damaging(1) TCGA-CN-6992-01 19 3907911 3907911 C A ATCAY Missense_Mutation p.H180N 0.33 deleterious(0) probably_damaging(0.992) TCGA-CN-6992-01 19 41442336 41442336 G A CYP2B7P RNA 0.50 TCGA-CN-6992-01 19 48342676 48342676 A T CRX Nonsense_Mutation p.K118* 0.59 TCGA-CN-6992-01 19 49477910 49477910 G T GYS1 Silent p.I463I 0.63 TCGA-CN-6992-01 19 54301518 54301518 G A NLRP12 Missense_Mutation p.A969V 0.50 tolerated(0.12) benign(0.027) TCGA-CN-6992-01 19 54401709 54401709 C G PRKCG Missense_Mutation p.R370G 0.49 tolerated(0.08) benign(0.024) TCGA-CN-6992-01 19 54779807 54779807 G A LILRB2 Missense_Mutation p.R550W 0.47 deleterious(0.04) possibly_damaging(0.634) TCGA-CN-6992-01 19 55378058 55378058 C A KIR3DL2 Missense_Mutation p.P414T 0.53 tolerated(0.82) benign(0.025) TCGA-CN-6992-01 19 58718244 58718244 G A ZNF274 Silent p.L138L 0.21 TCGA-CN-6992-01 19 6913740 6913740 C T EMR1 Missense_Mutation p.S400F 0.40 deleterious(0.02) benign(0.321) TCGA-CN-6992-01 19 8555792 8555792 C T PRAM1 Silent p.R574R 0.03 TCGA-CN-6992-01 19 8616943 8616943 C G MYO1F Missense_Mutation p.E204Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-CN-6992-01 19 8987085 8987085 G A MUC16 Silent p.L13969L 0.29 TCGA-CN-6992-01 19 9047583 9047583 A G MUC16 Missense_Mutation p.W11350R 0.30 benign(0.001) TCGA-CN-6992-01 19 9577625 9577625 A T ZNF560 Missense_Mutation p.S666R 0.40 tolerated(0.18) benign(0.001) TCGA-CN-6992-01 19 9639320 9639320 C A ZNF426 Missense_Mutation p.M467I 0.25 tolerated(1) benign(0.344) TCGA-CN-6992-01 1 111490596 111490596 C T LRIF1 Silent p.K765K 0.20 TCGA-CN-6992-01 1 114193672 114193672 G T MAGI3 Nonsense_Mutation p.E762* 0.47 TCGA-CN-6992-01 1 115537355 115537355 T A SYCP1 Missense_Mutation p.Y914N 0.77 deleterious(0.01) benign(0.221) TCGA-CN-6992-01 1 118537063 118537063 C A SPAG17 Missense_Mutation p.R1715L 0.48 deleterious(0) benign(0.106) TCGA-CN-6992-01 1 120311418 120311418 G A HMGCS2 Missense_Mutation p.A17V 0.24 tolerated_low_confidence(0.78) benign(0.002) TCGA-CN-6992-01 1 157551393 157551393 T A FCRL4 Missense_Mutation p.T393S 0.63 tolerated(0.09) benign(0.141) TCGA-CN-6992-01 1 157771764 157771764 C A FCRL1 Missense_Mutation p.C276F 0.48 deleterious(0) probably_damaging(0.999) TCGA-CN-6992-01 1 157803236 157803236 T C CD5L Missense_Mutation p.K262R 0.49 tolerated(0.16) benign(0.132) TCGA-CN-6992-01 1 158263029 158263029 C A CD1C Missense_Mutation p.A306D 0.24 tolerated(0.17) benign(0.223) TCGA-CN-6992-01 1 158368630 158368630 C G OR10T2 Missense_Mutation p.M209I 0.14 tolerated(0.19) benign(0.033) TCGA-CN-6992-01 1 158607983 158607983 C T SPTA1 Missense_Mutation p.G1677R 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-CN-6992-01 1 158656328 158656328 C A SPTA1 5'UTR 0.43 TCGA-CN-6992-01 1 159277544 159277544 G T FCER1A Missense_Mutation p.R199L 0.50 tolerated(0.27) benign(0) TCGA-CN-6992-01 1 16357081 16357081 G T CLCNKA Missense_Mutation p.A512S 0.58 tolerated(0.13) benign(0.124) TCGA-CN-6992-01 1 165398110 165398110 G T RXRG Missense_Mutation p.T48N 0.14 tolerated_low_confidence(0.12) benign(0.079) TCGA-CN-6992-01 1 166991121 166991121 C T MAEL 3'UTR 0.45 TCGA-CN-6992-01 1 168200757 168200757 T C SFT2D2 Silent p.V23V 0.48 TCGA-CN-6992-01 1 16890588 16890588 T A NBPF1 Silent p.L1090L 0.06 TCGA-CN-6992-01 1 169586541 169586541 G T SELP Missense_Mutation p.A69D 0.28 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 1 171300851 171300851 G A FMO4 Missense_Mutation p.R186H 0.14 deleterious(0.02) probably_damaging(0.984) TCGA-CN-6992-01 1 176758976 176758976 G - PAPPA2 Frame_Shift_Del p.G1583Efs*78 0.29 TCGA-CN-6992-01 1 178871291 178871291 G A RALGPS2 Missense_Mutation p.M525I 0.10 tolerated(0.46) benign(0.008) TCGA-CN-6992-01 1 181702849 181702849 C T CACNA1E Silent p.P1075P 0.26 TCGA-CN-6992-01 1 197390857 197390857 G A CRB1 Missense_Mutation p.M633I 0.32 tolerated(1) benign(0.002) TCGA-CN-6992-01 1 203708793 203708793 A G ATP2B4 Silent p.P1143P 0.31 TCGA-CN-6992-01 1 207697298 207697298 G T CR1 Missense_Mutation p.R277L 0.22 tolerated(0.67) benign(0.204) TCGA-CN-6992-01 1 211263942 211263942 G A KCNH1 Missense_Mutation p.T134I 0.45 deleterious(0.01) probably_damaging(0.93) TCGA-CN-6992-01 1 214209204 214209204 A T PROX1 3'UTR 0.35 TCGA-CN-6992-01 1 232577560 232577560 G A SIPA1L2 Silent p.D1164D 0.13 TCGA-CN-6992-01 1 240072502 240072502 G A CHRM3 Missense_Mutation p.R584H 0.18 tolerated(0.09) possibly_damaging(0.66) TCGA-CN-6992-01 1 240072555 240072555 C T CHRM3 3'UTR 0.13 TCGA-CN-6992-01 1 241757688 241757688 C A OPN3 3'UTR 0.32 TCGA-CN-6992-01 1 245026026 245026026 C G HNRNPU Missense_Mutation p.G233A 0.37 tolerated(0.92) possibly_damaging(0.794) TCGA-CN-6992-01 1 247655122 247655122 C A OR2W5 RNA 0.29 TCGA-CN-6992-01 1 248343988 248343988 G A OR2M2 Missense_Mutation p.R234H 0.46 tolerated(0.09) benign(0.036) TCGA-CN-6992-01 1 35333227 35333227 G T DLGAP3 Silent p.I829I 0.74 TCGA-CN-6992-01 1 40235514 40235514 C T OXCT2 Missense_Mutation p.V472M 0.56 deleterious(0.01) possibly_damaging(0.893) TCGA-CN-6992-01 1 40705148 40705148 G A RLF Missense_Mutation p.V1592I 0.18 tolerated(0.12) possibly_damaging(0.689) TCGA-CN-6992-01 1 43011090 43011090 C A CCDC30 Missense_Mutation p.L89I 0.52 tolerated(0.08) possibly_damaging(0.548) TCGA-CN-6992-01 1 47078896 47078896 T G MOB3C Missense_Mutation p.K85T 0.56 tolerated(0.28) benign(0.064) TCGA-CN-6992-01 1 71544178 71544178 G C ZRANB2 Missense_Mutation p.S60R 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-CN-6992-01 20 30366776 30366776 A G TPX2 Missense_Mutation p.K348R 0.14 tolerated(0.29) benign(0.376) TCGA-CN-6992-01 20 30749133 30749133 G C TM9SF4 Missense_Mutation p.V582L 0.40 tolerated(1) possibly_damaging(0.788) TCGA-CN-6992-01 20 46281792 46281792 T C NCOA3 Silent p.S1413S 0.46 TCGA-CN-6992-01 20 48491309 48491309 C A SLC9A8 Silent p.V358V 0.31 TCGA-CN-6992-01 20 48494548 48494548 C T SLC9A8 Missense_Mutation p.S385F 0.25 deleterious(0) probably_damaging(0.964) TCGA-CN-6992-01 20 62234382 62234382 T C GMEB2 Missense_Mutation p.D98G 0.20 deleterious(0) benign(0.004) TCGA-CN-6992-01 20 62328104 62328104 C G TNFRSF6B 5'UTR 0.42 TCGA-CN-6992-01 21 14417577 14417577 T A RNU6-614P 5'Flank 0.25 TCGA-CN-6992-01 21 28212319 28212319 C A ADAMTS1 Missense_Mutation p.G576V 0.20 deleterious(0) probably_damaging(0.995) TCGA-CN-6992-01 21 32624279 32624279 T C TIAM1 Missense_Mutation p.N397S 0.38 tolerated(0.15) benign(0) TCGA-CN-6992-01 21 34878305 34878305 C T GART Silent p.A853A 0.11 TCGA-CN-6992-01 21 34932259 34932259 G A SON Intron 0.30 TCGA-CN-6992-01 21 45550662 45550662 G A PWP2 3'UTR 0.34 TCGA-CN-6992-01 22 19951848 19951848 G A COMT Intron 0.16 TCGA-CN-6992-01 22 22385588 22385588 A T IGLV4-69 Missense_Mutation p.Q26L 0.28 deleterious(0) probably_damaging(0.996) TCGA-CN-6992-01 22 32894169 32894169 G A FBXO7 Silent p.P407P 0.21 TCGA-CN-6992-01 22 39224292 39224292 C G NPTXR Missense_Mutation p.G284R 0.29 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 22 50987660 50987660 C T KLHDC7B Silent p.Y355Y 0.27 TCGA-CN-6992-01 22 51237125 51237125 G A RPL23AP82 RNA 0.21 TCGA-CN-6992-01 2 10581633 10581633 A G ODC1 Splice_Site p.X414_splice 0.24 TCGA-CN-6992-01 2 11750844 11750844 G T GREB1 Missense_Mutation p.R899S 0.24 deleterious(0) probably_damaging(0.96) TCGA-CN-6992-01 2 121740372 121740372 T C GLI2 Silent p.Y533Y 0.11 TCGA-CN-6992-01 2 141201897 141201897 A C LRP1B Splice_Site p.X3432_splice 0.68 TCGA-CN-6992-01 2 141232793 141232793 G T LRP1B Missense_Mutation p.T3180K 0.71 benign(0.403) TCGA-CN-6992-01 2 166898884 166898884 G T SCN1A Missense_Mutation p.H698Q 0.67 tolerated(0.86) benign(0.003) TCGA-CN-6992-01 2 168107605 168107605 C T XIRP2 Missense_Mutation p.P3235S 0.69 benign(0.065) TCGA-CN-6992-01 2 179498188 179498188 C T TTN Missense_Mutation p.V14300M 0.70 TCGA-CN-6992-01 2 179587770 179587770 C T TTN Intron 0.28 TCGA-CN-6992-01 2 185803233 185803233 C T ZNF804A Missense_Mutation p.P1037L 0.75 deleterious(0) probably_damaging(0.994) TCGA-CN-6992-01 2 189925481 189925481 C A COL5A2 Missense_Mutation p.G687V 0.65 unknown(0) TCGA-CN-6992-01 2 197594246 197594246 G C CCDC150 Intron 0.67 TCGA-CN-6992-01 2 198334873 198334873 G T COQ10B Missense_Mutation p.R176I 0.16 deleterious(0.01) benign(0.133) TCGA-CN-6992-01 2 215275038 215275038 G C SPAG16 Nonstop_Mutation p.*632Sext*15 0.19 TCGA-CN-6992-01 2 228173623 228173623 G - COL4A3 Frame_Shift_Del p.G1491Afs*38 0.46 TCGA-CN-6992-01 2 228973575 228973575 T A SPHKAP Silent p.V73V 0.65 TCGA-CN-6992-01 2 238242092 238242092 C T COL6A3 Splice_Site p.X3110_splice 0.73 TCGA-CN-6992-01 2 23980963 23980963 G A ATAD2B Missense_Mutation p.R1135W 0.17 deleterious(0) possibly_damaging(0.846) TCGA-CN-6992-01 2 242079332 242079332 C T PASK Missense_Mutation p.D190N 0.10 tolerated(0.06) probably_damaging(1) TCGA-CN-6992-01 2 24247090 24247090 C T MFSD2B Missense_Mutation p.S480F 0.16 deleterious(0) possibly_damaging(0.49) TCGA-CN-6992-01 2 24290706 24290706 C T SF3B14 Missense_Mutation p.D102N 0.05 tolerated(0.1) benign(0.007) TCGA-CN-6992-01 2 43801646 43801646 C G THADA Missense_Mutation p.D520H 0.15 deleterious(0.01) possibly_damaging(0.687) TCGA-CN-6992-01 2 48914940 48914940 C A LHCGR Missense_Mutation p.G666C 0.54 deleterious(0) possibly_damaging(0.907) TCGA-CN-6992-01 2 49189919 49189919 C T FSHR Missense_Mutation p.G681S 0.06 tolerated(0.08) benign(0.027) TCGA-CN-6992-01 2 50573944 50573944 C A NRXN1 Intron 0.59 TCGA-CN-6992-01 2 61566804 61566804 T C USP34 Missense_Mutation p.H838R 0.30 tolerated(0.29) benign(0.024) TCGA-CN-6992-01 2 66796002 66796002 G A MEIS1 Intron 0.26 TCGA-CN-6992-01 2 79384334 79384334 G T REG3A 3'UTR 0.27 TCGA-CN-6992-01 2 88870420 88870420 C A EIF2AK3 Missense_Mutation p.G986V 0.43 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 2 89100724 89100724 C T ANKRD36BP2 RNA 0.23 TCGA-CN-6992-01 2 89309560 89309560 C A IGKV1-9 Silent p.G90G 0.28 TCGA-CN-6992-01 2 96944433 96944433 G C SNRNP200 Missense_Mutation p.H1780Q 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-CN-6992-01 3 111312889 111312889 A T ZBED2 Missense_Mutation p.F54I 0.35 tolerated(0.08) benign(0.008) TCGA-CN-6992-01 3 114069375 114069375 G A ZBTB20 Missense_Mutation p.A517V 0.14 tolerated(0.29) probably_damaging(0.939) TCGA-CN-6992-01 3 126633572 126633572 C G CHCHD6 Nonsense_Mutation p.S182* 0.73 TCGA-CN-6992-01 3 127338055 127338055 G A MCM2 Silent p.P733P 0.22 TCGA-CN-6992-01 3 132279956 132279956 C T ACAD11 Missense_Mutation p.A703T 0.10 deleterious(0.01) possibly_damaging(0.515) TCGA-CN-6992-01 3 133191346 133191346 G T BFSP2 Missense_Mutation p.R394L 0.72 tolerated(0.85) benign(0.004) TCGA-CN-6992-01 3 154886357 154886357 C A MME Silent p.S619S 0.32 TCGA-CN-6992-01 3 160219947 160219947 C G KPNA4 Missense_Mutation p.G504A 0.07 tolerated(0.12) benign(0.049) TCGA-CN-6992-01 3 164906545 164906545 G T SLITRK3 Silent p.R692R 0.35 TCGA-CN-6992-01 3 170819397 170819397 A G TNIK Missense_Mutation p.L811P 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-CN-6992-01 3 192994612 192994612 G T ATP13A5 Missense_Mutation p.P1108Q 0.27 deleterious(0.01) possibly_damaging(0.794) TCGA-CN-6992-01 3 195489041 195489041 A T MUC4 Missense_Mutation p.V4810D 0.30 probably_damaging(0.942) TCGA-CN-6992-01 3 44951648 44951648 G A TGM4 Missense_Mutation p.R465K 0.40 tolerated(0.94) benign(0.001) TCGA-CN-6992-01 3 44952515 44952515 G C TGM4 Missense_Mutation p.E558Q 0.32 deleterious(0.01) benign(0.354) TCGA-CN-6992-01 3 45776775 45776775 C T SACM1L Silent p.G383G 0.24 TCGA-CN-6992-01 3 47887994 47887994 G A DHX30 Missense_Mutation p.E478K 0.29 tolerated(0.55) benign(0.067) TCGA-CN-6992-01 3 52263103 52263103 G A TWF2 Missense_Mutation p.R333W 0.17 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 3 52443900 52443900 C T BAP1 5'UTR 0.47 TCGA-CN-6992-01 3 53260829 53260829 C T TKT Missense_Mutation p.D555N 0.12 tolerated(0.15) benign(0.037) TCGA-CN-6992-01 3 77089985 77089985 G T ROBO2 Intron 0.53 TCGA-CN-6992-01 3 95374195 95374195 G A MTHFD2P1 RNA 0.40 TCGA-CN-6992-01 4 100131356 100131356 G T ADH6 Nonsense_Mutation p.Y150* 0.38 TCGA-CN-6992-01 4 113461126 113461127 - T C4orf21 Frame_Shift_Ins p.R2022Kfs*8 0.26 TCGA-CN-6992-01 4 115767118 115767118 G T NDST4 Missense_Mutation p.T659K 0.36 deleterious(0.03) probably_damaging(0.991) TCGA-CN-6992-01 4 134072572 134072572 G A PCDH10 Missense_Mutation p.G426E 0.64 tolerated(0.07) possibly_damaging(0.574) TCGA-CN-6992-01 4 147561489 147561489 C A POU4F2 Silent p.A253A 0.81 TCGA-CN-6992-01 4 153247228 153247228 A T FBXW7 Missense_Mutation p.V525E 0.54 deleterious(0) probably_damaging(0.997) TCGA-CN-6992-01 4 159568073 159568073 C A RXFP1 Silent p.A492A 0.58 TCGA-CN-6992-01 4 164534544 164534544 G T MARCH1 Missense_Mutation p.A55E 0.50 deleterious(0.02) probably_damaging(0.994) TCGA-CN-6992-01 4 178911699 178911699 C A LINC01098 3'UTR 0.68 TCGA-CN-6992-01 4 189012609 189012609 C A TRIML2 Missense_Mutation p.C361F 0.39 deleterious(0) probably_damaging(0.99) TCGA-CN-6992-01 4 2661595 2661595 C T FAM193A Missense_Mutation p.P229L 0.44 deleterious(0) benign(0.185) TCGA-CN-6992-01 4 39122661 39122661 C G KLHL5 Missense_Mutation p.A748G 0.19 tolerated(0.25) possibly_damaging(0.876) TCGA-CN-6992-01 4 41984019 41984019 G T DCAF4L1 Silent p.A70A 0.62 TCGA-CN-6992-01 4 71655329 71655329 A T RUFY3 Intron 0.36 TCGA-CN-6992-01 4 73012771 73012771 G C NPFFR2 Missense_Mutation p.V271L 0.27 tolerated(0.16) possibly_damaging(0.596) TCGA-CN-6992-01 4 74441859 74441859 G T RASSF6 3'UTR 0.35 TCGA-CN-6992-01 4 85661382 85661382 A T WDFY3 Missense_Mutation p.I2141N 0.32 deleterious(0) possibly_damaging(0.873) TCGA-CN-6992-01 4 87610317 87610317 A G PTPN13 Missense_Mutation p.K174E 0.30 tolerated(0.25) possibly_damaging(0.769) TCGA-CN-6992-01 5 10405687 10405687 C T MARCH6 Silent p.V450V 0.47 TCGA-CN-6992-01 5 1094289 1094289 T C SLC12A7 Missense_Mutation p.K67E 0.06 deleterious(0.02) benign(0.052) TCGA-CN-6992-01 5 140553886 140553886 G C PCDHB7 Silent p.L490L 0.54 TCGA-CN-6992-01 5 140751528 140751528 G T PCDHGB3 Nonsense_Mutation p.E523* 0.41 TCGA-CN-6992-01 5 145175945 145175945 C T PRELID2 Intron 0.45 TCGA-CN-6992-01 5 169509800 169509800 C T DOCK2 Silent p.L1811L 0.51 TCGA-CN-6992-01 5 170238960 170238960 G A GABRP Missense_Mutation p.G341R 0.59 tolerated(0.33) probably_damaging(0.984) TCGA-CN-6992-01 5 179296770 179296770 T A TBC1D9B Silent p.P930P 0.46 TCGA-CN-6992-01 5 180218667 180218667 C A MGAT1 Silent p.L435L 0.52 TCGA-CN-6992-01 5 180429673 180429673 G A BTNL3 Silent p.E225E 0.63 TCGA-CN-6992-01 5 2749623 2749623 G C IRX2 Missense_Mutation p.N176K 0.38 deleterious(0) possibly_damaging(0.906) TCGA-CN-6992-01 5 41048473 41048473 A G MROH2B Missense_Mutation p.V546A 0.31 tolerated(0.76) benign(0.002) TCGA-CN-6992-01 5 43161390 43161390 A T ZNF131 Silent p.T137T 0.29 TCGA-CN-6992-01 5 45261997 45261997 C G HCN1 3'UTR 0.37 TCGA-CN-6992-01 5 45262557 45262557 G C HCN1 Silent p.A713A 0.28 TCGA-CN-6992-01 5 45396705 45396705 C A HCN1 Missense_Mutation p.W373C 0.23 deleterious(0) possibly_damaging(0.87) TCGA-CN-6992-01 5 45695881 45695881 C A HCN1 Silent p.G105G 0.29 TCGA-CN-6992-01 5 5457653 5457653 G T KIAA0947 Missense_Mutation p.E300D 0.38 deleterious(0.03) possibly_damaging(0.718) TCGA-CN-6992-01 5 6600032 6600032 G A NSUN2 3'UTR 0.22 TCGA-CN-6992-01 5 71756259 71756259 G A ZNF366 Silent p.H355H 0.33 TCGA-CN-6992-01 5 7826964 7826964 C A ADCY2 Missense_Mutation p.Q1086K 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-CN-6992-01 5 96443064 96443064 G T LIX1 Missense_Mutation p.S129R 0.47 tolerated(0.22) benign(0.023) TCGA-CN-6992-01 6 10529180 10529180 G A GCNT2 Silent p.A12A 0.18 TCGA-CN-6992-01 6 117150007 117150007 C A GPRC6A Missense_Mutation p.R57L 0.17 deleterious(0.02) benign(0.178) TCGA-CN-6992-01 6 117678071 117678071 A C ROS1 Missense_Mutation p.Y1288D 0.06 deleterious(0) probably_damaging(0.999) TCGA-CN-6992-01 6 123369837 123369837 C T CLVS2 Missense_Mutation p.T212I 0.31 deleterious(0.04) possibly_damaging(0.811) TCGA-CN-6992-01 6 137814987 137814987 G A OLIG3 Silent p.R107R 0.18 TCGA-CN-6992-01 6 146271502 146271502 C A SHPRH Missense_Mutation p.D294Y 0.34 tolerated(0.21) possibly_damaging(0.774) TCGA-CN-6992-01 6 146271503 146271503 C T SHPRH Silent p.V293V 0.33 TCGA-CN-6992-01 6 151055105 151055105 C T PLEKHG1 Silent p.N96N 0.15 TCGA-CN-6992-01 6 151671537 151671537 C T AKAP12 Missense_Mutation p.R671C 0.11 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 6 152690104 152690104 T A SYNE1 Intron 0.39 TCGA-CN-6992-01 6 165715112 165715112 C A C6orf118 Missense_Mutation p.K233N 0.32 tolerated(0.07) benign(0.081) TCGA-CN-6992-01 6 166889289 166889289 T C RPS6KA2 Intron 0.33 TCGA-CN-6992-01 6 170628053 170628053 C A FAM120B Missense_Mutation p.H525Q 0.25 tolerated_low_confidence(0.48) benign(0.312) TCGA-CN-6992-01 6 24581232 24581232 C T KIAA0319 Missense_Mutation p.G401R 0.17 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 6 28269721 28269721 T - PGBD1 Frame_Shift_Del p.L697Rfs*8 0.26 TCGA-CN-6992-01 6 2948847 2948847 C A SERPINB6 Silent p.P272P 0.34 TCGA-CN-6992-01 6 30557701 30557701 G T ABCF1 Missense_Mutation p.R728L 0.30 deleterious(0.01) possibly_damaging(0.898) TCGA-CN-6992-01 6 30672319 30672319 G C MDC1 Silent p.V1547V 0.18 TCGA-CN-6992-01 6 30673202 30673202 G T MDC1 Missense_Mutation p.S1253Y 0.19 deleterious(0) possibly_damaging(0.795) TCGA-CN-6992-01 6 31597550 31597550 C T PRRC2A Missense_Mutation p.P728S 0.19 possibly_damaging(0.641) TCGA-CN-6992-01 6 39869182 39869182 G T DAAM2 Silent p.R972R 0.37 TCGA-CN-6992-01 6 47775957 47775957 C A OPN5 Nonsense_Mutation p.S275* 0.35 TCGA-CN-6992-01 6 48036041 48036041 G A PTCHD4 Silent p.L117L 0.26 TCGA-CN-6992-01 6 49802965 49802965 C A CRISP1 3'UTR 0.30 TCGA-CN-6992-01 6 51695776 51695776 C T PKHD1 Missense_Mutation p.A2729T 0.30 tolerated(0.38) benign(0.169) TCGA-CN-6992-01 6 52697722 52697722 C A GSTA5 Missense_Mutation p.V161L 0.31 tolerated(1) benign(0.067) TCGA-CN-6992-01 6 63990707 63990707 G T LGSN Missense_Mutation p.T250N 0.40 deleterious(0.01) possibly_damaging(0.612) TCGA-CN-6992-01 6 64401851 64401851 T G PHF3 Missense_Mutation p.L805R 0.36 tolerated(0.07) benign(0.299) TCGA-CN-6992-01 6 71571503 71571503 G A SMAP1 3'UTR 0.38 TCGA-CN-6992-01 6 74063748 74063748 G A DPPA5 Silent p.D40D 0.20 TCGA-CN-6992-01 6 84302213 84302213 C G SNAP91 Missense_Mutation p.A631P 0.33 tolerated(0.33) probably_damaging(0.991) TCGA-CN-6992-01 6 87796070 87796070 G C CGA Missense_Mutation p.F57L 0.30 deleterious(0) probably_damaging(0.95) TCGA-CN-6992-01 7 100682580 100682580 C T MUC17 Missense_Mutation p.P2628L 0.70 benign(0.02) TCGA-CN-6992-01 7 102738868 102738868 G T ARMC10 Missense_Mutation p.Q300H 0.22 deleterious(0.04) benign(0.049) TCGA-CN-6992-01 7 113559060 113559060 C A PPP1R3A 5'UTR 0.74 TCGA-CN-6992-01 7 114284743 114284743 G C FOXP2 Silent p.S356S 0.11 TCGA-CN-6992-01 7 124475372 124475372 G A POT1 Missense_Mutation p.S489L 0.14 deleterious(0) benign(0.367) TCGA-CN-6992-01 7 142250865 142250865 C T TRBV6-4 Missense_Mutation p.G61E 0.70 tolerated(0.11) possibly_damaging(0.855) TCGA-CN-6992-01 7 143807030 143807030 T A OR2A2 Missense_Mutation p.Y119N 0.71 deleterious(0) probably_damaging(0.973) TCGA-CN-6992-01 7 154862941 154862941 G T HTR5A Missense_Mutation p.R111L 0.30 tolerated(0.07) benign(0.124) TCGA-CN-6992-01 7 35674850 35674850 C T HERPUD2 Nonsense_Mutation p.W279* 0.63 TCGA-CN-6992-01 7 45928415 45928415 C A IGFBP1 Missense_Mutation p.A55D 0.33 deleterious(0.02) probably_damaging(0.988) TCGA-CN-6992-01 7 50660592 50660592 C T GRB10 3'UTR 0.06 TCGA-CN-6992-01 7 55914269 55914269 G T SEPT14 Missense_Mutation p.P39H 0.33 deleterious(0) probably_damaging(0.974) TCGA-CN-6992-01 7 57188130 57188130 C T ZNF479 Missense_Mutation p.G331D 0.28 deleterious(0.02) probably_damaging(1) TCGA-CN-6992-01 7 73753270 73753270 A G CLIP2 Missense_Mutation p.N205S 0.32 deleterious(0) probably_damaging(0.989) TCGA-CN-6992-01 7 76058904 76058904 G A ZP3 Missense_Mutation p.V129M 0.18 deleterious(0.04) possibly_damaging(0.504) TCGA-CN-6992-01 7 81591325 81591325 C T CACNA2D1 Missense_Mutation p.D951N 0.09 deleterious(0.04) possibly_damaging(0.588) TCGA-CN-6992-01 7 82764156 82764156 G A PCLO Missense_Mutation p.R904C 0.09 unknown(0) TCGA-CN-6992-01 7 94057692 94057692 G T COL1A2 Missense_Mutation p.R1205L 0.30 unknown(0) TCGA-CN-6992-01 7 99691888 99691888 C T MCM7 Missense_Mutation p.V586M 0.14 deleterious(0) probably_damaging(0.993) TCGA-CN-6992-01 7 99702922 99702922 G A AP4M1 Missense_Mutation p.E263K 0.16 deleterious(0.01) probably_damaging(0.944) TCGA-CN-6992-01 8 114111143 114111143 G T CSMD3 Silent p.S253S 0.16 TCGA-CN-6992-01 8 114111144 114111144 G T CSMD3 Missense_Mutation p.S253Y 0.16 tolerated(0.78) probably_damaging(0.936) TCGA-CN-6992-01 8 121587411 121587411 T C SNTB1 Missense_Mutation p.K351E 0.36 deleterious(0) possibly_damaging(0.826) TCGA-CN-6992-01 8 134225121 134225121 C A WISP1 Silent p.A28A 0.38 TCGA-CN-6992-01 8 139151264 139151264 C T FAM135B Missense_Mutation p.R1289H 0.23 deleterious(0) probably_damaging(0.991) TCGA-CN-6992-01 8 139691866 139691866 A T COL22A1 Nonsense_Mutation p.C1022* 0.33 TCGA-CN-6992-01 8 141561467 141561467 G A AGO2 Silent p.I446I 0.38 TCGA-CN-6992-01 8 143961004 143961004 C G CYP11B1 Missense_Mutation p.G76R 0.31 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 8 144403486 144403486 C A TOP1MT Missense_Mutation p.R344L 0.46 deleterious(0) probably_damaging(0.973) TCGA-CN-6992-01 8 144992693 144992693 G A PLEC Missense_Mutation p.R3903W 0.27 probably_damaging(1) TCGA-CN-6992-01 8 144996154 144996154 G C PLEC Nonsense_Mutation p.S2749* 0.07 TCGA-CN-6992-01 8 145583729 145583729 G A SLC52A2 Missense_Mutation p.A193T 0.31 tolerated(0.25) possibly_damaging(0.866) TCGA-CN-6992-01 8 145626157 145626157 C T CPSF1 Silent p.E198E 0.18 TCGA-CN-6992-01 8 22167481 22167481 G T PIWIL2 Missense_Mutation p.G565V 0.53 deleterious(0) probably_damaging(0.991) TCGA-CN-6992-01 8 30889770 30889770 C G PURG Missense_Mutation p.E177Q 0.18 tolerated(0.64) probably_damaging(0.969) TCGA-CN-6992-01 8 30889786 30889786 C G PURG Silent p.L171L 0.17 TCGA-CN-6992-01 8 30890041 30890041 C G PURG Missense_Mutation p.K86N 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-6992-01 8 38250136 38250136 C T LETM2 5'UTR 0.15 TCGA-CN-6992-01 8 42171930 42171930 C T IKBKB Silent p.Y261Y 0.31 TCGA-CN-6992-01 8 53084518 53084518 C T ST18 Silent p.G301G 0.33 TCGA-CN-6992-01 8 61769309 61769309 G A CHD7 Silent p.S2490S 0.16 TCGA-CN-6992-01 8 90960066 90960066 C G NBN Missense_Mutation p.A634P 0.25 tolerated(0.26) benign(0.032) TCGA-CN-6992-01 8 99440930 99440930 G T KCNS2 Missense_Mutation p.E241D 0.42 deleterious(0) probably_damaging(0.989) TCGA-CN-6992-01 9 107547710 107547727 TTCTATGTGGAGTCGCTT - ABCA1 In_Frame_Del p.K2199_E2204del 0.18 TCGA-CN-6992-01 9 118974201 118974201 G T PAPPA Missense_Mutation p.M636I 0.39 deleterious(0) benign(0.019) TCGA-CN-6992-01 9 125512877 125512877 C G OR1L6 Missense_Mutation p.L251V 0.27 deleterious(0) benign(0.174) TCGA-CN-6992-01 9 13106880 13106880 G A MPDZ 3'UTR 0.44 TCGA-CN-6992-01 9 133901891 133901891 C T LAMC3 Missense_Mutation p.S198F 0.30 deleterious(0) probably_damaging(1) TCGA-CN-6992-01 9 136216969 136216969 C G RPL7A Intron 0.25 TCGA-CN-6992-01 9 139888291 139888291 C T C9orf142 3'UTR 0.17 TCGA-CN-6992-01 9 140728957 140728957 G A EHMT1 Missense_Mutation p.E1233K 0.17 tolerated(0.88) benign(0.005) TCGA-CN-6992-01 9 2123782 2123782 G A SMARCA2 Missense_Mutation p.E1276K 0.17 benign(0.292) TCGA-CN-6992-01 9 32784253 32784253 T A TMEM215 Silent p.G24G 0.61 TCGA-CN-6992-01 9 37888027 37888027 C T SLC25A51 Missense_Mutation p.R174Q 0.24 deleterious(0.04) possibly_damaging(0.78) TCGA-CN-6992-01 9 72006633 72006633 G C FAM189A2 Silent p.G422G 0.10 TCGA-CN-6992-01 9 84547750 84547750 C T RP11-383M4.6 Intron 0.28 TCGA-CN-6992-01 9 84603737 84603737 G A SPATA31D1 Missense_Mutation p.E2K 0.46 deleterious_low_confidence(0) benign(0.329) TCGA-CN-6992-01 9 90264868 90264868 G A DAPK1 Nonsense_Mutation p.W487* 0.28 TCGA-CN-6992-01 X 101969964 101969964 C T GPRASP2 Missense_Mutation p.S56F 0.76 deleterious(0.01) benign(0.202) TCGA-CN-6992-01 X 102979899 102979899 G T GLRA4 Silent p.S43S 0.70 TCGA-CN-6992-01 X 107844632 107844632 G T COL4A5 Missense_Mutation p.G653V 0.85 unknown(0) TCGA-CN-6992-01 X 109695339 109695339 C T RGAG1 Silent p.S498S 0.74 TCGA-CN-6992-01 X 117700005 117700005 T C DOCK11 Missense_Mutation p.M244T 0.82 deleterious(0.02) benign(0.088) TCGA-CN-6992-01 X 119211023 119211023 C T RHOXF2B Missense_Mutation p.V104I 0.24 tolerated(0.24) benign(0.058) TCGA-CN-6992-01 X 122755304 122755304 C T THOC2 Missense_Mutation p.R1307Q 0.07 tolerated(0.14) benign(0.007) TCGA-CN-6992-01 X 129546423 129546423 A T RBMX2 Missense_Mutation p.R190S 0.87 tolerated(0.08) benign(0.025) TCGA-CN-6992-01 X 135429438 135429438 C T GPR112 Silent p.F1191F 0.74 TCGA-CN-6992-01 X 141290919 141290919 C G MAGEC2 Missense_Mutation p.E285D 0.78 deleterious(0.02) possibly_damaging(0.88) TCGA-CN-6992-01 X 142596992 142596992 C A SPANXN3 Splice_Site p.X27_splice 0.75 TCGA-CN-6992-01 X 147743456 147743456 C T AFF2 Nonsense_Mutation p.R70* 0.69 TCGA-CN-6992-01 X 154261754 154261754 C T FUNDC2 Silent p.F70F 0.12 TCGA-CN-6992-01 X 18836239 18836239 C A PPEF1 Missense_Mutation p.Q493K 0.66 tolerated(0.98) benign(0.013) TCGA-CN-6992-01 X 31089993 31089993 C G FTHL17 Silent p.T26T 0.56 TCGA-CN-6992-01 X 32536238 32536238 C G DMD Missense_Mutation p.D727H 0.69 probably_damaging(0.986) TCGA-CN-6992-01 X 36162980 36162980 G T CHDC2 3'UTR 0.56 TCGA-CN-6992-01 X 48822582 48822582 C A KCND1 Missense_Mutation p.C533F 0.71 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CN-6992-01 X 50052941 50052941 A T CCNB3 Missense_Mutation p.K591M 0.59 deleterious(0) probably_damaging(0.969) TCGA-CN-6992-01 X 86877360 86877360 G T KLHL4 Missense_Mutation p.Q358H 0.75 tolerated(0.1) benign(0.043) TCGA-CN-6992-01 X 91132036 91132036 C A PCDH11X Missense_Mutation p.T266N 0.69 deleterious(0.04) possibly_damaging(0.769) TCGA-CN-6994-01 10 102748351 102748351 C T C10orf2 Silent p.S128S 0.13 TCGA-CN-6994-01 10 107012616 107012616 C A SORCS3 Silent p.P1063P 0.16 TCGA-CN-6994-01 10 43609084 43609086 GAG - RET In_Frame_Del p.E616del 0.39 TCGA-CN-6994-01 10 55912867 55912867 C T PCDH15 Missense_Mutation p.E593K 0.21 tolerated(0.19) possibly_damaging(0.542) TCGA-CN-6994-01 10 55912869 55912869 G T PCDH15 Missense_Mutation p.A592E 0.20 tolerated(0.1) benign(0.081) TCGA-CN-6994-01 10 68687032 68687032 A G LRRTM3 Missense_Mutation p.R120G 0.19 deleterious(0) possibly_damaging(0.593) TCGA-CN-6994-01 10 94708041 94708043 GAA - EXOC6 In_Frame_Del p.E442del 0.16 TCGA-CN-6994-01 11 120957653 120957653 C G TBCEL Missense_Mutation p.L375V 0.22 tolerated(0.61) benign(0.002) TCGA-CN-6994-01 11 123886869 123886869 G T OR10G4 Missense_Mutation p.M196I 0.21 tolerated(0.22) benign(0.012) TCGA-CN-6994-01 11 33566766 33566766 C A KIAA1549L Missense_Mutation p.T779K 0.34 deleterious(0) possibly_damaging(0.848) TCGA-CN-6994-01 11 376312 376312 G A B4GALNT4 Missense_Mutation p.E420K 0.14 tolerated(0.45) possibly_damaging(0.468) TCGA-CN-6994-01 11 45926374 45926374 C A MAPK8IP1 Missense_Mutation p.Q628K 0.05 tolerated(1) benign(0.003) TCGA-CN-6994-01 11 55653541 55653541 G C TRIM51 Intron 0.23 TCGA-CN-6994-01 11 6631166 6631166 G A ILK Splice_Site p.X327_splice 0.06 TCGA-CN-6994-01 11 95564382 95564382 A G CEP57 Missense_Mutation p.N489D 0.65 deleterious(0) benign(0.075) TCGA-CN-6994-01 12 10124195 10124195 A C CLEC12A Silent p.S10S 0.42 TCGA-CN-6994-01 12 14794028 14794028 G A GUCY2C Missense_Mutation p.R686W 0.09 tolerated(0.23) benign(0.024) TCGA-CN-6994-01 12 48196010 48196010 C T HDAC7 Missense_Mutation p.A23T 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-CN-6994-01 12 53455934 53455934 C T TENC1 Intron 0.13 TCGA-CN-6994-01 12 55356372 55356372 C A TESPA1 Missense_Mutation p.R437I 0.15 deleterious_low_confidence(0) benign(0.377) TCGA-CN-6994-01 12 56498590 56498590 G A PA2G4 Missense_Mutation p.M23I 0.14 tolerated(0.1) benign(0.183) TCGA-CN-6994-01 12 58013892 58013892 C T SLC26A10 5'UTR 0.14 TCGA-CN-6994-01 13 32729801 32729801 T A FRY Splice_Site p.X551_splice 0.31 TCGA-CN-6994-01 14 101521047 101521047 G C MIR134 RNA 0.08 TCGA-CN-6994-01 14 106926394 106926394 C T IGHV3-43 Missense_Mutation p.D50N 0.09 tolerated_low_confidence(0.4) benign(0.001) TCGA-CN-6994-01 14 90509414 90509414 A G TDP1 Missense_Mutation p.D585G 0.08 deleterious(0) possibly_damaging(0.631) TCGA-CN-6994-01 14 99640654 99640654 G A BCL11B Missense_Mutation p.T840M 0.14 deleterious(0) benign(0.335) TCGA-CN-6994-01 15 20490555 20490555 C A CHEK2P2 RNA 0.06 TCGA-CN-6994-01 15 25327970 25327970 A T SNORD116-16 RNA 0.18 TCGA-CN-6994-01 15 25449388 25449388 G A SNORD115-20 5'Flank 0.11 TCGA-CN-6994-01 15 41022163 41022163 C T RAD51 Missense_Mutation p.S297L 0.45 deleterious(0) probably_damaging(0.964) TCGA-CN-6994-01 15 48441469 48441469 G C MYEF2 Missense_Mutation p.A493G 0.15 tolerated(0.55) benign(0.006) TCGA-CN-6994-01 15 65703589 65703589 C T IGDCC4 Missense_Mutation p.A64T 0.31 tolerated(0.51) benign(0.004) TCGA-CN-6994-01 15 78316600 78316600 C A TBC1D2B Missense_Mutation p.K456N 0.30 deleterious(0) probably_damaging(0.931) TCGA-CN-6994-01 15 78758639 78758639 G C IREB2 Missense_Mutation p.G146A 0.10 tolerated(0.35) possibly_damaging(0.755) TCGA-CN-6994-01 16 3614104 3614104 G A NLRC3 Silent p.G325G 0.34 TCGA-CN-6994-01 16 723125 723125 C T RHOT2 Silent p.A575A 0.20 TCGA-CN-6994-01 17 26089930 26089930 G A NOS2 Silent p.S898S 0.45 TCGA-CN-6994-01 17 28407106 28407106 G A EFCAB5 Missense_Mutation p.G1015E 0.13 deleterious(0) probably_damaging(1) TCGA-CN-6994-01 17 30302527 30302527 T C SUZ12 Silent p.V206V 0.37 TCGA-CN-6994-01 17 45890757 45890757 C T OSBPL7 Missense_Mutation p.A538T 0.33 tolerated(0.27) possibly_damaging(0.577) TCGA-CN-6994-01 17 61988275 61988275 G T CSHL1 Missense_Mutation p.T7K 0.25 deleterious(0.02) benign(0.32) TCGA-CN-6994-01 17 62029168 62029168 C G SCN4A Missense_Mutation p.Q823H 0.33 deleterious(0.02) probably_damaging(1) TCGA-CN-6994-01 17 65105354 65105354 G T HELZ Missense_Mutation p.P1456H 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-CN-6994-01 17 74073206 74073206 C A GALR2 Nonsense_Mutation p.C286* 0.14 TCGA-CN-6994-01 17 7577090 7577090 C G TP53 Missense_Mutation p.R283P 0.24 deleterious(0.01) probably_damaging(0.978) TCGA-CN-6994-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.31 tolerated(0.11) benign(0.308) TCGA-CN-6994-01 17 76046391 76046391 G A TNRC6C Silent p.T416T 0.27 TCGA-CN-6994-01 17 76471394 76471407 GTGATCTGAAACAC - DNAH17 Frame_Shift_Del p.V2808Pfs*13 0.13 TCGA-CN-6994-01 17 78269374 78269374 G C RNF213 Missense_Mutation p.W591C 0.26 benign(0.145) TCGA-CN-6994-01 17 78337076 78337076 G A RNF213 Missense_Mutation p.E3844K 0.16 benign(0.01) TCGA-CN-6994-01 18 55103824 55103824 G C ONECUT2 Silent p.L292L 0.14 TCGA-CN-6994-01 18 67993288 67993288 A G SOCS6 Missense_Mutation p.I462V 0.16 tolerated(0.52) benign(0) TCGA-CN-6994-01 19 10665783 10665783 G C KRI1 Missense_Mutation p.F593L 0.16 tolerated(1) benign(0.048) TCGA-CN-6994-01 19 12739064 12739064 G A ZNF791 Missense_Mutation p.E241K 0.10 deleterious(0.04) probably_damaging(0.992) TCGA-CN-6994-01 19 18084972 18084972 G A KCNN1 Missense_Mutation p.R92H 0.60 deleterious(0) probably_damaging(0.988) TCGA-CN-6994-01 19 19153573 19153573 C T ARMC6 Missense_Mutation p.S28F 0.13 deleterious(0) possibly_damaging(0.62) TCGA-CN-6994-01 19 1993166 1993166 G C BTBD2 Nonsense_Mutation p.Y179* 0.13 TCGA-CN-6994-01 19 20728196 20728196 G A ZNF737 Silent p.N271N 0.11 TCGA-CN-6994-01 19 36205889 36205889 G A ZBTB32 Missense_Mutation p.D121N 0.36 tolerated(0.26) possibly_damaging(0.539) TCGA-CN-6994-01 19 37210699 37210699 C A ZNF567 Missense_Mutation p.T327N 0.19 tolerated(0.15) probably_damaging(0.993) TCGA-CN-6994-01 19 37619879 37619879 G C ZNF420 Missense_Mutation p.Q662H 0.11 deleterious(0.02) benign(0.003) TCGA-CN-6994-01 19 49224214 49224214 G A RASIP1 Silent p.I911I 0.17 TCGA-CN-6994-01 19 52794352 52794352 G A ZNF766 Silent p.E436E 0.07 TCGA-CN-6994-01 19 55670431 55670431 C G DNAAF3 Nonstop_Mutation p.*609Sext*4 0.16 TCGA-CN-6994-01 19 9869059 9869059 C T ZNF846 Missense_Mutation p.G232R 0.25 deleterious(0.02) possibly_damaging(0.887) TCGA-CN-6994-01 1 142803598 142803598 A G RP11-423O2.5 RNA 0.18 TCGA-CN-6994-01 1 152281946 152281946 A C FLG Missense_Mutation p.S1806A 0.19 benign(0.097) TCGA-CN-6994-01 1 16955029 16955029 C T CROCCP2 3'Flank 0.33 TCGA-CN-6994-01 1 173883822 173883822 T G SERPINC1 Missense_Mutation p.T93P 0.20 tolerated(0.25) possibly_damaging(0.466) TCGA-CN-6994-01 1 240256799 240256799 G A FMN2 Missense_Mutation p.A464T 0.19 unknown(0) TCGA-CN-6994-01 1 51873905 51873905 G C EPS15 Missense_Mutation p.Q459E 0.22 tolerated(0.41) benign(0.044) TCGA-CN-6994-01 1 54607036 54607036 C T CDCP2 Silent p.P166P 0.50 TCGA-CN-6994-01 20 34091852 34091852 G A CEP250 Silent p.L1885L 0.26 TCGA-CN-6994-01 21 39671654 39671654 G A KCNJ15 Silent p.E157E 0.14 TCGA-CN-6994-01 22 41623845 41623845 G A L3MBTL2 Silent p.K620K 0.14 TCGA-CN-6994-01 2 103006518 103006518 G T IL18R1 Missense_Mutation p.D318Y 0.39 deleterious(0.01) benign(0.017) TCGA-CN-6994-01 2 112705062 112705062 G C MERTK Missense_Mutation p.E225D 0.37 tolerated(0.23) benign(0.098) TCGA-CN-6994-01 2 141528566 141528566 G A LRP1B Missense_Mutation p.S1837F 0.32 possibly_damaging(0.485) TCGA-CN-6994-01 2 1481015 1481015 C T TPO Missense_Mutation p.A326V 0.32 deleterious(0) probably_damaging(1) TCGA-CN-6994-01 2 160240133 160240133 C G BAZ2B Missense_Mutation p.E1249Q 0.18 probably_damaging(0.998) TCGA-CN-6994-01 2 162728868 162728868 G A SLC4A10 Missense_Mutation p.E278K 0.14 tolerated(0.22) possibly_damaging(0.814) TCGA-CN-6994-01 2 197990126 197990126 G T ANKRD44 Missense_Mutation p.L177M 0.26 deleterious(0) possibly_damaging(0.746) TCGA-CN-6994-01 2 197990157 197990157 G C ANKRD44 Missense_Mutation p.I166M 0.24 deleterious(0) probably_damaging(0.98) TCGA-CN-6994-01 2 197990618 197990618 G A ANKRD44 Silent p.V135V 0.18 TCGA-CN-6994-01 2 197990624 197990624 G A ANKRD44 Silent p.V133V 0.20 TCGA-CN-6994-01 2 197990663 197990663 G A ANKRD44 Silent p.V120V 0.22 TCGA-CN-6994-01 2 197990752 197990752 G A ANKRD44 Nonsense_Mutation p.Q91* 0.23 TCGA-CN-6994-01 2 242542453 242542453 C G THAP4 Missense_Mutation p.R481T 0.29 deleterious(0.04) probably_damaging(0.973) TCGA-CN-6994-01 2 37449559 37449559 C G CEBPZ Missense_Mutation p.E677Q 0.12 tolerated(0.47) benign(0.148) TCGA-CN-6994-01 2 97024809 97024809 G T NCAPH Missense_Mutation p.G412V 0.13 deleterious(0.02) possibly_damaging(0.782) TCGA-CN-6994-01 3 112724658 112724658 G A C3orf17 Missense_Mutation p.R477W 0.11 deleterious(0.02) benign(0.002) TCGA-CN-6994-01 3 136573476 136573476 G C SLC35G2 Silent p.L58L 0.12 TCGA-CN-6994-01 3 140281716 140281716 C T CLSTN2 Missense_Mutation p.P759L 0.17 deleterious(0.05) possibly_damaging(0.477) TCGA-CN-6994-01 3 147113999 147113999 G A ZIC4 Missense_Mutation p.P160S 0.15 tolerated(0.66) benign(0.006) TCGA-CN-6994-01 3 167512409 167512409 G T SERPINI1 Silent p.G226G 0.33 TCGA-CN-6994-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-CN-6994-01 3 33174068 33174068 C A CRTAP Missense_Mutation p.A315D 0.63 deleterious(0) probably_damaging(0.967) TCGA-CN-6994-01 3 42660540 42660540 G C NKTR Silent p.G54G 0.26 TCGA-CN-6994-01 3 51979210 51979210 G T PARP3 Missense_Mutation p.E284D 0.64 tolerated(0.26) benign(0.007) TCGA-CN-6994-01 3 93603601 93603601 G C PROS1 Missense_Mutation p.S488C 0.13 deleterious(0) possibly_damaging(0.765) TCGA-CN-6994-01 4 128651737 128651737 C T SLC25A31 Missense_Mutation p.R13W 0.14 deleterious(0.01) benign(0.153) TCGA-CN-6994-01 4 146813423 146813423 C T ZNF827 Missense_Mutation p.R413H 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-CN-6994-01 4 148545966 148545966 G C TMEM184C Missense_Mutation p.L101F 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-CN-6994-01 4 153896099 153896099 G C FHDC1 Silent p.L552L 0.09 TCGA-CN-6994-01 4 155717899 155717899 G A RBM46 5'UTR 0.25 TCGA-CN-6994-01 4 39233472 39233472 G T WDR19 Nonsense_Mutation p.E680* 0.46 TCGA-CN-6994-01 4 73956816 73956816 C G ANKRD17 Missense_Mutation p.A2177P 0.20 benign(0) TCGA-CN-6994-01 5 101813510 101813510 G C SLCO6A1 Missense_Mutation p.F224L 0.21 deleterious(0.01) possibly_damaging(0.601) TCGA-CN-6994-01 5 112227862 112227862 A T ZRSR1 Missense_Mutation p.N176Y 0.26 tolerated(0.25) benign(0.223) TCGA-CN-6994-01 5 133895524 133895524 C T JADE2 Missense_Mutation p.L106F 0.29 deleterious(0.05) benign(0.063) TCGA-CN-6994-01 5 140167279 140167279 C T PCDHA1 Silent p.N468N 0.48 TCGA-CN-6994-01 5 141244696 141244696 C G PCDH1 Silent p.G400G 0.27 TCGA-CN-6994-01 5 180038443 180038443 G C FLT4 Missense_Mutation p.Q1192E 0.06 tolerated(0.27) benign(0.22) TCGA-CN-6994-01 5 35070274 35070274 C T PRLR Missense_Mutation p.G213R 0.18 deleterious(0) probably_damaging(0.995) TCGA-CN-6994-01 5 453741 453741 C T EXOC3 Silent p.T207T 0.30 TCGA-CN-6994-01 5 50685739 50685739 C G ISL1 Silent p.L246L 0.21 TCGA-CN-6994-01 5 5461339 5461339 C T KIAA0947 Missense_Mutation p.S631F 0.14 deleterious(0.01) possibly_damaging(0.819) TCGA-CN-6994-01 6 100896434 100896434 C T SIM1 Missense_Mutation p.V222I 0.47 tolerated(1) benign(0.016) TCGA-CN-6994-01 6 105232953 105232953 G C HACE1 Missense_Mutation p.A439G 0.16 tolerated(0.13) benign(0.01) TCGA-CN-6994-01 6 143818521 143818521 C T FUCA2 Intron 0.46 TCGA-CN-6994-01 6 160999635 160999635 C A LPA Missense_Mutation p.R1464L 0.17 tolerated(0.07) benign(0.13) TCGA-CN-6994-01 6 31828383 31828383 G A NEU1 Missense_Mutation p.R211W 0.20 tolerated(0.21) benign(0.005) TCGA-CN-6994-01 6 37429756 37429756 C T CMTR1 Silent p.F401F 0.19 TCGA-CN-6994-01 6 41065110 41065110 C T NFYA Silent p.A335A 0.19 TCGA-CN-6994-01 7 106508473 106508473 C T PIK3CG Missense_Mutation p.A156V 0.17 tolerated(0.12) benign(0.03) TCGA-CN-6994-01 7 119914945 119914945 C G KCND2 Missense_Mutation p.R87G 0.24 deleterious(0) probably_damaging(1) TCGA-CN-6994-01 7 135272382 135272382 G C NUP205 Missense_Mutation p.Q426H 0.11 deleterious(0.02) benign(0.045) TCGA-CN-6994-01 7 14188824 14188824 C G DGKB Missense_Mutation p.G783R 0.09 deleterious(0.03) benign(0.178) TCGA-CN-6994-01 7 30951587 30951587 G T AQP1 Silent p.T21T 0.28 TCGA-CN-6994-01 7 47915768 47915768 G A PKD1L1 Silent p.H1237H 0.16 TCGA-CN-6994-01 7 76891594 76891594 T C CCDC146 Silent p.T381T 0.16 TCGA-CN-6994-01 7 82763852 82763852 G T PCLO Missense_Mutation p.A1005D 0.11 unknown(0) TCGA-CN-6994-01 8 135602519 135602519 T A ZFAT Missense_Mutation p.N852I 0.13 deleterious(0.02) probably_damaging(0.929) TCGA-CN-6994-01 8 23702400 23702400 A C STC1 Silent p.A209A 0.17 TCGA-CN-6994-01 8 41791310 41791310 C T KAT6A Silent p.A1476A 0.28 TCGA-CN-6994-01 8 70515533 70515533 G A SULF1 Missense_Mutation p.D390N 0.05 deleterious(0.04) benign(0.139) TCGA-CN-6994-01 8 82441795 82441795 T C FABP12 Missense_Mutation p.T42A 0.17 deleterious(0.01) possibly_damaging(0.564) TCGA-CN-6994-01 8 82606646 82606646 T G SLC10A5 Missense_Mutation p.M188L 0.15 deleterious(0) possibly_damaging(0.63) TCGA-CN-6994-01 8 86048078 86048078 C G LRRCC1 Missense_Mutation p.Q737E 0.07 deleterious(0.01) probably_damaging(0.97) TCGA-CN-6994-01 9 104319876 104319876 C T RNF20 Nonsense_Mutation p.Q794* 0.18 TCGA-CN-6994-01 9 104335610 104335610 G T GRIN3A Missense_Mutation p.A1065E 0.37 tolerated(0.22) benign(0.432) TCGA-CN-6994-01 9 105767978 105767978 G C CYLC2 3'UTR 0.15 TCGA-CN-6994-01 9 110073972 110073972 T C RAD23B Silent p.G169G 0.49 TCGA-CN-6994-01 9 112899838 112899838 C A PALM2-AKAP2 Silent p.R672R 0.35 TCGA-CN-6994-01 9 117783505 117783505 G C TNC Missense_Mutation p.I2179M 0.16 deleterious(0) probably_damaging(0.999) TCGA-CN-6994-01 9 139418373 139418373 G T NOTCH1 Missense_Mutation p.P67T 0.45 tolerated(0.09) probably_damaging(0.967) TCGA-CN-6994-01 9 17388167 17388167 C G CNTLN Silent p.L665L 0.11 TCGA-CN-6994-01 9 35661158 35661158 C T CCDC107 Nonsense_Mutation p.R276* 0.16 TCGA-CN-6994-01 9 36169487 36169487 G A CCIN 5'UTR 0.78 TCGA-CN-6994-01 X 55054214 55054214 T A ALAS2 Intron 0.39 TCGA-CN-6994-01 X 73064268 73064268 G C XIST RNA 0.29 TCGA-CN-6995-01 10 101578649 101578649 G T ABCC2 Missense_Mutation p.D792Y 0.57 deleterious(0) probably_damaging(0.993) TCGA-CN-6995-01 10 102584502 102584502 G A PAX2 Silent p.V362V 0.17 TCGA-CN-6995-01 10 103342623 103342623 C A POLL Missense_Mutation p.R364L 0.13 tolerated(0.11) benign(0.354) TCGA-CN-6995-01 10 104018750 104018750 G A GBF1 Missense_Mutation p.A19T 0.12 deleterious(0.05) benign(0.178) TCGA-CN-6995-01 10 117849257 117849257 A T GFRA1 Missense_Mutation p.L398I 0.12 tolerated(0.25) benign(0.134) TCGA-CN-6995-01 10 118957108 118957108 G T KCNK18 Missense_Mutation p.G37C 0.52 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 10 134464009 134464009 G T INPP5A Silent p.T102T 0.46 TCGA-CN-6995-01 10 135346244 135346244 A T CYP2E1 Nonsense_Mutation p.R233* 0.12 TCGA-CN-6995-01 10 28151364 28151364 G C ARMC4 Missense_Mutation p.T933R 0.29 deleterious(0.01) possibly_damaging(0.782) TCGA-CN-6995-01 10 30317109 30317109 T A KIAA1462 Missense_Mutation p.E656D 0.19 tolerated(0.28) benign(0.058) TCGA-CN-6995-01 10 49371538 49371538 G A FRMPD2 Silent p.G1238G 0.15 TCGA-CN-6995-01 10 5929887 5929887 A G ANKRD16 Missense_Mutation p.L153P 0.21 deleterious(0) probably_damaging(0.992) TCGA-CN-6995-01 10 64575770 64575770 A G EGR2 Missense_Mutation p.V7A 0.44 tolerated(0.71) benign(0) TCGA-CN-6995-01 10 64974163 64974163 G C JMJD1C Missense_Mutation p.H588Q 0.10 tolerated_low_confidence(0.16) benign(0.002) TCGA-CN-6995-01 10 95791986 95791986 C T PLCE1 Silent p.L395L 0.11 TCGA-CN-6995-01 10 97769618 97769618 A G CC2D2B Missense_Mutation p.I20V 0.11 tolerated(0.43) benign(0.002) TCGA-CN-6995-01 11 105782701 105782701 T A GRIA4 Intron 0.37 TCGA-CN-6995-01 11 123676665 123676665 C A OR6M1 Silent p.T131T 0.49 TCGA-CN-6995-01 11 1491670 1491670 C G MOB2 Missense_Mutation p.R180T 0.33 deleterious(0) possibly_damaging(0.845) TCGA-CN-6995-01 11 26695058 26695058 T G SLC5A12 Missense_Mutation p.D533A 0.12 tolerated(0.35) benign(0.009) TCGA-CN-6995-01 11 44228424 44228424 A G EXT2 Missense_Mutation p.Y559C 0.34 deleterious(0) probably_damaging(0.985) TCGA-CN-6995-01 11 45672189 45672189 G A CHST1 Silent p.H95H 0.29 TCGA-CN-6995-01 11 47306595 47306595 G A MADD Missense_Mutation p.R754H 0.06 tolerated_low_confidence(0.19) benign(0.002) TCGA-CN-6995-01 11 5080588 5080588 G T OR52E2 Missense_Mutation p.N90K 0.37 tolerated(0.11) benign(0.01) TCGA-CN-6995-01 11 58979531 58979531 G A MPEG1 Nonsense_Mutation p.R270* 0.19 TCGA-CN-6995-01 11 62293536 62293536 C A AHNAK Missense_Mutation p.D2785Y 0.32 possibly_damaging(0.747) TCGA-CN-6995-01 11 65265869 65265869 G A MALAT1 RNA 0.41 TCGA-CN-6995-01 11 68506204 68506204 G C MTL5 Nonsense_Mutation p.S294* 0.36 TCGA-CN-6995-01 11 68506237 68506237 G A MTL5 Missense_Mutation p.S283L 0.33 tolerated(0.07) benign(0.232) TCGA-CN-6995-01 11 69063820 69063820 C A MYEOV Missense_Mutation p.H301Q 0.69 unknown(0) TCGA-CN-6995-01 11 89537595 89537595 A G TRIM49 Missense_Mutation p.C15R 0.26 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 11 92088310 92088310 G T FAT3 Missense_Mutation p.R1011L 0.31 benign(0.061) TCGA-CN-6995-01 11 92523307 92523307 G T FAT3 Missense_Mutation p.D1512Y 0.16 possibly_damaging(0.855) TCGA-CN-6995-01 11 92573756 92573756 T C FAT3 Missense_Mutation p.L3466S 0.30 probably_damaging(0.996) TCGA-CN-6995-01 12 101381432 101381432 C A ANO4 Missense_Mutation p.Q205K 0.17 tolerated(0.74) benign(0.041) TCGA-CN-6995-01 12 124421993 124421993 C T CCDC92 Missense_Mutation p.R203H 0.37 deleterious(0) probably_damaging(0.997) TCGA-CN-6995-01 12 15637161 15637161 G T PTPRO Missense_Mutation p.R110I 0.18 deleterious_low_confidence(0) benign(0.017) TCGA-CN-6995-01 12 21030851 21030851 T A SLCO1B3 Silent p.S372S 0.24 TCGA-CN-6995-01 12 25672821 25672821 C A IFLTD1 Missense_Mutation p.Q329H 0.18 tolerated(0.12) benign(0.055) TCGA-CN-6995-01 12 41312540 41312540 G T CNTN1 Missense_Mutation p.C65F 0.11 deleterious(0) probably_damaging(0.953) TCGA-CN-6995-01 12 44180289 44180289 G A IRAK4 Missense_Mutation p.V426I 0.16 tolerated(0.34) benign(0.02) TCGA-CN-6995-01 12 52056869 52056869 A T SCN8A Missense_Mutation p.T90S 0.34 tolerated(0.12) benign(0.028) TCGA-CN-6995-01 12 57918502 57918502 G A MBD6 Splice_Site p.X38_splice 0.43 TCGA-CN-6995-01 12 70932095 70932095 C T PTPRB Intron 0.18 TCGA-CN-6995-01 12 72956711 72956711 A G TRHDE Missense_Mutation p.I600V 0.11 tolerated(1) benign(0.004) TCGA-CN-6995-01 12 7556294 7556294 G A CD163L1 Silent p.S415S 0.24 TCGA-CN-6995-01 12 75601187 75601187 C G KCNC2 Missense_Mutation p.E193Q 0.14 tolerated(0.23) benign(0.079) TCGA-CN-6995-01 12 75892486 75892486 G A GLIPR1 Missense_Mutation p.R211Q 0.25 deleterious(0) probably_damaging(0.959) TCGA-CN-6995-01 12 80226236 80226236 G A PPP1R12A Missense_Mutation p.R175W 0.14 deleterious(0) probably_damaging(0.998) TCGA-CN-6995-01 12 81472018 81472018 C T ACSS3 Missense_Mutation p.P40L 0.14 tolerated_low_confidence(0.15) benign(0.056) TCGA-CN-6995-01 12 83250841 83250841 A G TMTC2 Missense_Mutation p.I46V 0.34 tolerated(0.15) benign(0.027) TCGA-CN-6995-01 12 9317736 9317736 C A PZP Missense_Mutation p.R829L 0.20 deleterious(0) possibly_damaging(0.496) TCGA-CN-6995-01 12 99056319 99056319 G T APAF1 Missense_Mutation p.D266Y 0.39 deleterious(0) probably_damaging(0.99) TCGA-CN-6995-01 13 101997697 101997697 G T NALCN Missense_Mutation p.P240Q 0.54 deleterious(0.04) probably_damaging(0.976) TCGA-CN-6995-01 13 110436062 110436062 G A IRS2 Missense_Mutation p.P780L 0.70 deleterious(0) probably_damaging(0.999) TCGA-CN-6995-01 13 21311925 21311925 T C N6AMT2 Missense_Mutation p.Y55C 0.47 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 13 28931821 28931821 T A FLT1 Silent p.G706G 0.55 TCGA-CN-6995-01 13 46357673 46357673 G A SIAH3 Missense_Mutation p.R219W 0.47 deleterious(0) probably_damaging(0.982) TCGA-CN-6995-01 13 52742144 52742144 G A MRPS31P5 RNA 0.42 TCGA-CN-6995-01 13 88329467 88329467 G A SLITRK5 Silent p.S608S 0.12 TCGA-CN-6995-01 13 95226909 95226909 T A TGDS 3'UTR 0.50 TCGA-CN-6995-01 14 107083284 107083284 G C IGHV4-59 Missense_Mutation p.A107G 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.516) TCGA-CN-6995-01 14 21464756 21464756 G A METTL17 Missense_Mutation p.R384H 0.34 tolerated(0.07) benign(0.008) TCGA-CN-6995-01 14 21464757 21464757 C T METTL17 Silent p.R384R 0.37 TCGA-CN-6995-01 14 24045142 24045142 G A JPH4 Silent p.N301N 0.18 TCGA-CN-6995-01 14 24769788 24769788 G C NOP9 Missense_Mutation p.C141S 0.26 tolerated(0.21) benign(0.02) TCGA-CN-6995-01 14 33684540 33684540 T A NPAS3 Missense_Mutation p.I98N 0.32 deleterious(0) benign(0.308) TCGA-CN-6995-01 14 42360587 42360587 A G LRFN5 Missense_Mutation p.Q507R 0.20 tolerated(0.27) benign(0.038) TCGA-CN-6995-01 14 53020234 53020234 C A GPR137C Silent p.P123P 0.17 TCGA-CN-6995-01 14 53173987 53173987 T C PSMC6 Missense_Mutation p.L31P 0.18 tolerated(0.09) benign(0.419) TCGA-CN-6995-01 14 93118018 93118018 C G RIN3 Silent p.S208S 0.21 TCGA-CN-6995-01 15 24923749 24923749 G T NPAP1 Missense_Mutation p.S912I 0.25 deleterious(0.03) possibly_damaging(0.806) TCGA-CN-6995-01 15 25479262 25479262 C T SNORD115-33 3'Flank 0.36 TCGA-CN-6995-01 15 32921915 32921915 G T ARHGAP11A Nonsense_Mutation p.E353* 0.22 TCGA-CN-6995-01 15 39886511 39886511 G T THBS1 Missense_Mutation p.M1125I 0.35 tolerated(0.25) possibly_damaging(0.465) TCGA-CN-6995-01 15 43638089 43638089 G A ADAL Missense_Mutation p.V155I 0.35 tolerated(0.22) benign(0.098) TCGA-CN-6995-01 15 44890998 44890998 C A SPG11 Silent p.G1241G 0.31 TCGA-CN-6995-01 15 63986610 63986610 T A HERC1 Missense_Mutation p.Q1794L 0.31 possibly_damaging(0.791) TCGA-CN-6995-01 15 65667661 65667661 C A IGDCC3 Silent p.L61L 0.26 TCGA-CN-6995-01 15 67873104 67873104 G T MAP2K5 Missense_Mutation p.V89L 0.31 tolerated(0.68) benign(0.007) TCGA-CN-6995-01 15 84255793 84255793 A T SH3GL3 Missense_Mutation p.Q228L 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-CN-6995-01 15 84506852 84506852 C A ADAMTSL3 Nonsense_Mutation p.C204* 0.18 TCGA-CN-6995-01 15 93007664 93007664 C T ST8SIA2 3'UTR 0.21 TCGA-CN-6995-01 15 93198579 93198579 A T FAM174B Missense_Mutation p.L104H 0.21 deleterious(0) possibly_damaging(0.907) TCGA-CN-6995-01 16 1818367 1818367 G T MAPK8IP3 Missense_Mutation p.V1243F 0.30 deleterious(0) probably_damaging(0.992) TCGA-CN-6995-01 16 2273689 2273689 G A E4F1 Silent p.A25A 0.17 TCGA-CN-6995-01 16 23079283 23079283 A C USP31 3'UTR 0.22 TCGA-CN-6995-01 16 2333222 2333222 C A ABCA3 Missense_Mutation p.G1334C 0.35 tolerated(0.17) benign(0.001) TCGA-CN-6995-01 16 24567192 24567192 G A RBBP6 Missense_Mutation p.R163H 0.33 deleterious_low_confidence(0.05) possibly_damaging(0.9) TCGA-CN-6995-01 16 29872572 29872572 A T CDIPT Missense_Mutation p.F63I 0.30 deleterious(0) possibly_damaging(0.834) TCGA-CN-6995-01 16 30490651 30490651 G A ITGAL Splice_Site p.X149_splice 0.35 TCGA-CN-6995-01 16 339603 339603 T C AXIN1 Missense_Mutation p.R767G 0.21 deleterious(0.01) benign(0.028) TCGA-CN-6995-01 16 4242554 4242554 C G SRL Missense_Mutation p.R341P 0.25 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 16 48399304 48399304 T A SIAH1 Nonsense_Mutation p.R29* 0.20 TCGA-CN-6995-01 16 5143491 5143491 G T FAM86A Silent p.I78I 0.17 TCGA-CN-6995-01 16 57067576 57067576 G A NLRC5 Silent p.T846T 0.29 TCGA-CN-6995-01 16 58147914 58147914 G A C16orf80 3'UTR 0.16 TCGA-CN-6995-01 16 75512874 75512874 G A CHST6 Missense_Mutation p.R285C 0.06 deleterious(0.04) probably_damaging(0.953) TCGA-CN-6995-01 16 84163848 84163848 G A HSDL1 Nonsense_Mutation p.R137* 0.05 TCGA-CN-6995-01 17 10263357 10263357 T C MYH13 Missense_Mutation p.T189A 0.22 deleterious(0) possibly_damaging(0.825) TCGA-CN-6995-01 17 10535187 10535187 T A MYH3 Missense_Mutation p.K1701N 0.13 deleterious(0) probably_damaging(0.995) TCGA-CN-6995-01 17 12905653 12905653 C A ELAC2 Silent p.V414V 0.27 TCGA-CN-6995-01 17 27447762 27447762 C T MYO18A Missense_Mutation p.A534T 0.33 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 17 38948796 38948796 C A KRT28 Missense_Mutation p.K426N 0.28 deleterious(0) probably_damaging(0.928) TCGA-CN-6995-01 17 3926063 3926063 C G ZZEF1 Silent p.L2384L 0.23 TCGA-CN-6995-01 17 46051295 46051295 A G CDK5RAP3 Splice_Site p.X62_splice 0.25 TCGA-CN-6995-01 17 465756 465756 C A VPS53 Missense_Mutation p.G515C 0.27 tolerated(0.12) probably_damaging(0.967) TCGA-CN-6995-01 17 71390387 71390387 G A SDK2 Silent p.V1223V 0.20 TCGA-CN-6995-01 17 74901400 74901400 G T MGAT5B Missense_Mutation p.Q291H 0.25 tolerated(0.14) benign(0.005) TCGA-CN-6995-01 17 7576858 7576858 G - TP53 Frame_Shift_Del p.L330Ffs*15 0.23 TCGA-CN-6995-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.31 TCGA-CN-6995-01 18 12262964 12262964 G T CIDEA Missense_Mutation p.S60I 0.24 tolerated(0.1) possibly_damaging(0.845) TCGA-CN-6995-01 18 13884633 13884633 C G MC2R Missense_Mutation p.R295S 0.23 tolerated(0.77) benign(0.001) TCGA-CN-6995-01 18 34359499 34359499 A G FHOD3 3'UTR 0.38 TCGA-CN-6995-01 18 44559713 44559713 C T TCEB3B Missense_Mutation p.M641I 0.46 deleterious(0.02) benign(0.007) TCGA-CN-6995-01 18 50450075 50450075 A G DCC Splice_Site p.X233_splice 0.47 TCGA-CN-6995-01 18 61304834 61304834 A G SERPINB4 3'UTR 0.62 TCGA-CN-6995-01 19 11018818 11018818 C - CARM1 Frame_Shift_Del p.Q151Sfs*12 0.42 TCGA-CN-6995-01 19 12433432 12433432 T C ZNF563 Missense_Mutation p.M33V 0.32 deleterious(0) possibly_damaging(0.588) TCGA-CN-6995-01 19 19258514 19258514 C A MEF2B Missense_Mutation p.R129L 0.29 deleterious(0.04) probably_damaging(0.914) TCGA-CN-6995-01 19 32843732 32843732 T C ZNF507 Intron 0.25 TCGA-CN-6995-01 19 38976617 38976617 G A RYR1 Silent p.P1774P 0.09 TCGA-CN-6995-01 19 39100273 39100273 G C MAP4K1 Silent p.R323R 0.20 TCGA-CN-6995-01 19 41062929 41062929 G T SPTBN4 Missense_Mutation p.V1764L 0.18 tolerated(0.92) benign(0.267) TCGA-CN-6995-01 19 44515025 44515025 G A ZNF230 Silent p.K278K 0.18 TCGA-CN-6995-01 19 46973549 46973549 C T PNMAL1 Silent p.K248K 0.11 TCGA-CN-6995-01 19 48202269 48202269 C T GLTSCR1 Nonsense_Mutation p.Q1149* 0.27 TCGA-CN-6995-01 19 48601480 48601480 C A PLA2G4C Missense_Mutation p.V172L 0.26 tolerated(0.16) benign(0.421) TCGA-CN-6995-01 19 50098459 50098459 C T PRR12 Silent p.I289I 0.28 TCGA-CN-6995-01 19 53668172 53668172 C A ZNF665 Missense_Mutation p.S524I 0.27 tolerated(0.27) benign(0.434) TCGA-CN-6995-01 19 54677883 54677883 T G MBOAT7 Missense_Mutation p.Y425S 0.15 deleterious(0) probably_damaging(0.994) TCGA-CN-6995-01 19 55146552 55146552 C T LILRB1 Intron 0.25 TCGA-CN-6995-01 19 9062563 9062563 G A MUC16 Missense_Mutation p.P8295S 0.30 unknown(0) TCGA-CN-6995-01 19 9086084 9086084 G A MUC16 Nonsense_Mutation p.R1911* 0.26 TCGA-CN-6995-01 19 9213532 9213532 G T OR7G2 Missense_Mutation p.L151I 0.32 deleterious(0) probably_damaging(0.955) TCGA-CN-6995-01 1 158047873 158047873 G T KIRREL Nonsense_Mutation p.E99* 0.29 TCGA-CN-6995-01 1 159683905 159683905 A G CRP Missense_Mutation p.F29L 0.13 deleterious(0.02) possibly_damaging(0.791) TCGA-CN-6995-01 1 171505303 171505303 C T PRRC2C Missense_Mutation p.P725S 0.29 unknown(0) TCGA-CN-6995-01 1 176563768 176563768 G T PAPPA2 Missense_Mutation p.C343F 0.21 deleterious(0) benign(0.001) TCGA-CN-6995-01 1 177245369 177245369 C G BRINP2 Missense_Mutation p.R271G 0.12 deleterious(0.05) benign(0.149) TCGA-CN-6995-01 1 179363133 179363133 T A AXDND1 Nonsense_Mutation p.L320* 0.29 TCGA-CN-6995-01 1 196883745 196883745 C G CFHR4 Missense_Mutation p.T433S 0.13 tolerated(0.09) benign(0.037) TCGA-CN-6995-01 1 200378334 200378334 T A ZNF281 Missense_Mutation p.E167V 0.13 tolerated(0.33) benign(0.266) TCGA-CN-6995-01 1 202887471 202887471 G A KLHL12 Missense_Mutation p.P132L 0.16 deleterious(0) possibly_damaging(0.794) TCGA-CN-6995-01 1 236590709 236590709 A G EDARADD Missense_Mutation p.I60V 0.27 tolerated(1) benign(0.001) TCGA-CN-6995-01 1 240071629 240071629 A G CHRM3 Missense_Mutation p.Y293C 0.10 tolerated(0.23) benign(0.348) TCGA-CN-6995-01 1 240492727 240492727 T A FMN2 Missense_Mutation p.S1466T 0.14 benign(0.444) TCGA-CN-6995-01 1 28384547 28384547 T C EYA3 5'UTR 0.61 TCGA-CN-6995-01 1 62943474 62943474 C A DOCK7 Missense_Mutation p.R1813L 0.42 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 1 85331581 85331581 C T LPAR3 Missense_Mutation p.A75T 0.17 deleterious(0) possibly_damaging(0.844) TCGA-CN-6995-01 1 91180103 91180103 C T BARHL2 Nonsense_Mutation p.W279* 0.44 TCGA-CN-6995-01 20 40033381 40033381 G A CHD6 Missense_Mutation p.S2667F 0.24 deleterious_low_confidence(0) benign(0.139) TCGA-CN-6995-01 20 49195149 49195149 G A PTPN1 Missense_Mutation p.D229N 0.14 deleterious(0) possibly_damaging(0.874) TCGA-CN-6995-01 20 55026880 55026880 G T CASS4 Missense_Mutation p.Q216H 0.27 tolerated(0.25) benign(0.02) TCGA-CN-6995-01 20 8741079 8741079 A G PLCB1 Silent p.T894T 0.22 TCGA-CN-6995-01 21 15870786 15870786 G A SAMSN1 Missense_Mutation p.A367V 0.28 tolerated(0.11) benign(0.03) TCGA-CN-6995-01 21 19165780 19165781 - A C21orf91 Frame_Shift_Ins p.Q283Afs*18 0.21 TCGA-CN-6995-01 21 32582412 32582412 C G TIAM1 Silent p.T779T 0.22 TCGA-CN-6995-01 21 32638554 32638554 T G TIAM1 Silent p.A245A 0.23 TCGA-CN-6995-01 22 23438557 23438557 T C GNAZ Silent p.C225C 0.18 TCGA-CN-6995-01 22 30887558 30887558 A G SEC14L4 Splice_Site p.X361_splice 0.14 TCGA-CN-6995-01 22 42557319 42557319 C T TCF20 3'UTR 0.18 TCGA-CN-6995-01 2 111416240 111416240 C T BUB1 Silent p.T452T 0.33 TCGA-CN-6995-01 2 135743820 135743820 A T MAP3K19 Missense_Mutation p.N874K 0.35 tolerated(0.36) benign(0.01) TCGA-CN-6995-01 2 136743083 136743083 T C DARS 5'UTR 0.32 TCGA-CN-6995-01 2 152698521 152698521 G A CACNB4 Missense_Mutation p.R400C 0.27 deleterious(0) possibly_damaging(0.847) TCGA-CN-6995-01 2 166172118 166172118 A G SCN2A Silent p.K507K 0.31 TCGA-CN-6995-01 2 169787239 169787239 C T ABCB11 Missense_Mutation p.G1116E 0.27 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 2 17836566 17836566 A T VSNL1 Missense_Mutation p.N161Y 0.50 deleterious(0) possibly_damaging(0.776) TCGA-CN-6995-01 2 179650467 179650467 G A TTN Silent p.I791I 0.15 TCGA-CN-6995-01 2 202065258 202065258 C T CASP10 Intron 0.27 TCGA-CN-6995-01 2 210561667 210561667 A - MAP2 Frame_Shift_Del p.T1474Qfs*14 0.16 TCGA-CN-6995-01 2 216986930 216986930 A G XRCC5 Missense_Mutation p.I213V 0.22 tolerated(0.54) benign(0) TCGA-CN-6995-01 2 220493179 220493179 A G SLC4A3 Missense_Mutation p.D35G 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.898) TCGA-CN-6995-01 2 234680964 234680964 C T UGT1A4 Missense_Mutation p.P455L 0.15 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 2 27550056 27550056 C G GTF3C2 Missense_Mutation p.E835D 0.12 tolerated(0.13) probably_damaging(0.937) TCGA-CN-6995-01 2 48936097 48936097 G T LHCGR Missense_Mutation p.P224T 0.18 deleterious(0) probably_damaging(0.961) TCGA-CN-6995-01 2 51255050 51255050 C A NRXN1 Missense_Mutation p.R121L 0.38 deleterious(0) probably_damaging(0.994) TCGA-CN-6995-01 2 71778282 71778282 G A DYSF Missense_Mutation p.G563D 0.40 deleterious(0) probably_damaging(0.927) TCGA-CN-6995-01 2 86352147 86352147 C T PTCD3 Missense_Mutation p.S249F 0.12 deleterious(0.04) possibly_damaging(0.726) TCGA-CN-6995-01 2 88407935 88407935 G A SMYD1 Missense_Mutation p.M397I 0.45 deleterious(0.01) benign(0.314) TCGA-CN-6995-01 2 90249143 90249143 G A IGKV1D-43 Silent p.L33L 0.11 TCGA-CN-6995-01 2 97779369 97779369 G T ANKRD36 5'UTR 0.35 TCGA-CN-6995-01 3 108163738 108163738 C A MYH15 Missense_Mutation p.A822S 0.41 tolerated(0.5) possibly_damaging(0.697) TCGA-CN-6995-01 3 109031513 109031513 A T DPPA2 Missense_Mutation p.D20E 0.09 tolerated(0.42) benign(0.425) TCGA-CN-6995-01 3 119199009 119199009 G C POGLUT1 Missense_Mutation p.D190H 0.22 tolerated(0.26) benign(0.035) TCGA-CN-6995-01 3 119210421 119210421 G C POGLUT1 Missense_Mutation p.R341T 0.16 deleterious(0) probably_damaging(0.942) TCGA-CN-6995-01 3 120347225 120347225 T A HGD 3'UTR 0.13 TCGA-CN-6995-01 3 132435712 132435712 C T NPHP3 Missense_Mutation p.G238R 0.13 deleterious(0.01) probably_damaging(0.974) TCGA-CN-6995-01 3 142242944 142242944 G A ATR Missense_Mutation p.S1348F 0.10 deleterious(0.01) possibly_damaging(0.594) TCGA-CN-6995-01 3 153840415 153840415 G A ARHGEF26 Missense_Mutation p.E212K 0.54 tolerated_low_confidence(0.07) benign(0.08) TCGA-CN-6995-01 3 164735374 164735374 C - SI Frame_Shift_Del p.E1241Nfs*27 0.35 TCGA-CN-6995-01 3 168838941 168838941 G T MECOM Silent p.A222A 0.50 TCGA-CN-6995-01 3 192126013 192126013 A T FGF12 5'UTR 0.43 TCGA-CN-6995-01 3 193332569 193332569 A T OPA1 Silent p.L30L 0.49 TCGA-CN-6995-01 3 3146617 3146617 G T IL5RA Missense_Mutation p.L18M 0.36 tolerated(0.06) possibly_damaging(0.838) TCGA-CN-6995-01 3 58109357 58109357 G A FLNB Missense_Mutation p.V1222M 0.34 deleterious(0) probably_damaging(0.909) TCGA-CN-6995-01 3 71019957 71019957 C T FOXP1 Splice_Site p.X553_splice 0.38 TCGA-CN-6995-01 4 42576696 42576696 C G ATP8A1 Missense_Mutation p.G412A 0.14 deleterious(0) probably_damaging(0.999) TCGA-CN-6995-01 4 68490770 68490770 C T UBA6 Missense_Mutation p.R885H 0.15 tolerated(0.12) probably_damaging(0.985) TCGA-CN-6995-01 4 72420881 72420881 G C SLC4A4 Missense_Mutation p.G907R 0.12 deleterious(0) probably_damaging(0.998) TCGA-CN-6995-01 4 74735491 74735491 G A CXCL1 Missense_Mutation p.C69Y 0.39 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 4 81196135 81196135 C G FGF5 Missense_Mutation p.A143G 0.29 tolerated(0.2) benign(0.315) TCGA-CN-6995-01 4 89326088 89326088 T A HERC6 Missense_Mutation p.S385T 0.31 tolerated(0.3) benign(0.039) TCGA-CN-6995-01 5 140581048 140581048 C T PCDHB11 Silent p.N567N 0.44 TCGA-CN-6995-01 5 140741362 140741362 G C PCDHGB2 Missense_Mutation p.D554H 0.41 deleterious(0) probably_damaging(0.999) TCGA-CN-6995-01 5 140866933 140866933 T C PCDHGC4 Silent p.C731C 0.12 TCGA-CN-6995-01 5 141033932 141033932 A G ARAP3 Missense_Mutation p.V1407A 0.10 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CN-6995-01 5 148406412 148406412 G A SH3TC2 Intron 0.14 TCGA-CN-6995-01 5 7873625 7873625 G T MTRR Missense_Mutation p.R117L 0.21 tolerated(0.14) possibly_damaging(0.827) TCGA-CN-6995-01 5 79855683 79855683 C T ANKRD34B Silent p.K52K 0.14 TCGA-CN-6995-01 5 88047801 88047801 A C MEF2C Missense_Mutation p.S172R 0.12 deleterious(0.01) possibly_damaging(0.627) TCGA-CN-6995-01 5 94288963 94288963 C G MCTP1 Missense_Mutation p.C314S 0.21 tolerated(0.19) benign(0.01) TCGA-CN-6995-01 5 94989858 94989858 A T RFESD Missense_Mutation p.R84S 0.18 deleterious(0) probably_damaging(0.981) TCGA-CN-6995-01 6 110421760 110421760 C T WASF1 Missense_Mutation p.D549N 0.35 deleterious(0) possibly_damaging(0.728) TCGA-CN-6995-01 6 112537599 112537601 GTT - LAMA4 In_Frame_Del p.N89del 0.34 TCGA-CN-6995-01 6 128304088 128304088 G A PTPRK Missense_Mutation p.A1148V 0.09 deleterious(0) probably_damaging(0.989) TCGA-CN-6995-01 6 146720389 146720389 T A GRM1 Missense_Mutation p.S738R 0.39 deleterious(0.01) probably_damaging(0.947) TCGA-CN-6995-01 6 150184555 150184555 G A LRP11 Missense_Mutation p.S201L 0.35 tolerated(0.3) benign(0.036) TCGA-CN-6995-01 6 151239718 151239718 G A MTHFD1L Missense_Mutation p.V300I 0.38 tolerated(0.24) benign(0.004) TCGA-CN-6995-01 6 165715503 165715503 G T C6orf118 Missense_Mutation p.A103E 0.45 tolerated(0.21) benign(0.1) TCGA-CN-6995-01 6 165848755 165848755 C A PDE10A Missense_Mutation p.R169S 0.15 tolerated(0.06) possibly_damaging(0.805) TCGA-CN-6995-01 6 167595389 167595389 G A TCP10L2 Silent p.Q349Q 0.69 TCGA-CN-6995-01 6 26197234 26197234 T A HIST1H3D Missense_Mutation p.D82V 0.16 deleterious_low_confidence(0) benign(0.103) TCGA-CN-6995-01 6 26271403 26271403 G A HIST1H3G Silent p.R70R 0.08 TCGA-CN-6995-01 6 29407954 29407954 C A OR10C1 Silent p.L54L 0.36 TCGA-CN-6995-01 6 2948568 2948568 G T SERPINB6 Missense_Mutation p.N365K 0.48 tolerated(0.52) benign(0.037) TCGA-CN-6995-01 6 31752467 31752467 C A VARS Missense_Mutation p.A458S 0.31 tolerated(0.07) possibly_damaging(0.859) TCGA-CN-6995-01 6 31912989 31912989 G A C2 Missense_Mutation p.C705Y 0.08 deleterious(0) probably_damaging(0.98) TCGA-CN-6995-01 6 31938542 31938542 G A DXO Missense_Mutation p.S218F 0.13 deleterious(0) probably_damaging(0.98) TCGA-CN-6995-01 6 53378891 53378891 T C GCLC Intron 0.32 TCGA-CN-6995-01 6 89862895 89862895 A T PM20D2 Nonsense_Mutation p.R250* 0.40 TCGA-CN-6995-01 6 94068039 94068039 G T EPHA7 Missense_Mutation p.S308Y 0.52 tolerated(0.11) benign(0.005) TCGA-CN-6995-01 7 122338423 122338423 T C RNF133 Missense_Mutation p.I184V 0.27 tolerated(0.95) benign(0) TCGA-CN-6995-01 7 135304382 135304382 G T NUP205 Missense_Mutation p.G1392V 0.17 tolerated(0.32) benign(0.099) TCGA-CN-6995-01 7 137148266 137148266 G T DGKI Missense_Mutation p.L910M 0.32 tolerated(0.21) benign(0.002) TCGA-CN-6995-01 7 148801945 148801945 G A ZNF425 Missense_Mutation p.R340C 0.16 deleterious(0.03) benign(0.125) TCGA-CN-6995-01 7 150939293 150939293 G A SMARCD3 Missense_Mutation p.S202F 0.15 deleterious(0) probably_damaging(0.996) TCGA-CN-6995-01 7 21469118 21469118 C T SP4 Missense_Mutation p.S112L 0.23 tolerated(0.29) benign(0.018) TCGA-CN-6995-01 7 30693041 30693041 G A CRHR2 3'UTR 0.36 TCGA-CN-6995-01 7 37780667 37780667 G T GPR141 Missense_Mutation p.Q224H 0.28 deleterious(0) probably_damaging(0.956) TCGA-CN-6995-01 7 38424372 38424372 G A AMPH 3'UTR 0.26 TCGA-CN-6995-01 7 51097136 51097136 C G COBL Missense_Mutation p.D553H 0.27 deleterious(0.03) possibly_damaging(0.643) TCGA-CN-6995-01 7 63721218 63721218 C T ZNF679 Missense_Mutation p.A58V 0.21 tolerated(0.17) benign(0.115) TCGA-CN-6995-01 7 72419397 72419397 C - POM121 3'UTR 0.11 TCGA-CN-6995-01 7 73183873 73183873 G T CLDN3 Silent p.A169A 0.42 TCGA-CN-6995-01 7 75988084 75988084 G T YWHAG Silent p.A14A 0.27 TCGA-CN-6995-01 7 76140092 76140092 C A UPK3B Silent p.T41T 0.27 TCGA-CN-6995-01 7 82390032 82390032 C A PCLO Missense_Mutation p.V5071L 0.18 unknown(0) TCGA-CN-6995-01 7 82586052 82586052 G T PCLO Missense_Mutation p.P1406H 0.22 unknown(0) TCGA-CN-6995-01 7 8791022 8791022 G T NXPH1 Missense_Mutation p.G147W 0.22 deleterious(0) probably_damaging(1) TCGA-CN-6995-01 7 99918594 99918594 G T SPDYE3 3'UTR 0.09 TCGA-CN-6995-01 8 110575714 110575714 A G EBAG9 Intron 0.17 TCGA-CN-6995-01 8 133036663 133036663 G T OC90 3'UTR 0.32 TCGA-CN-6995-01 8 139164289 139164289 C A FAM135B Missense_Mutation p.G810V 0.13 tolerated(0.09) benign(0.157) TCGA-CN-6995-01 8 141568597 141568597 C A AGO2 Missense_Mutation p.A289S 0.42 tolerated(0.09) benign(0.409) TCGA-CN-6995-01 8 30546804 30546804 C T GSR Silent p.L305L 0.49 TCGA-CN-6995-01 8 70970925 70970925 G C PRDM14 Missense_Mutation p.R446G 0.31 deleterious(0) probably_damaging(0.927) TCGA-CN-6995-01 8 72935092 72935092 C T TRPA1 3'UTR 0.17 TCGA-CN-6995-01 8 73849954 73849954 T A KCNB2 Missense_Mutation p.F788L 0.20 tolerated_low_confidence(0.68) benign(0.001) TCGA-CN-6995-01 9 34635731 34635731 G C SIGMAR1 Silent p.V190V 0.54 TCGA-CN-6995-01 9 40772546 40772546 T C ZNF658 Missense_Mutation p.Y910C 0.53 deleterious(0) probably_damaging(0.998) TCGA-CN-6995-01 9 6007399 6007399 G A KIAA2026 Missense_Mutation p.P130L 0.55 tolerated(0.72) benign(0.293) TCGA-CN-6995-01 9 85616027 85616027 A T RASEF Nonsense_Mutation p.Y407* 0.20 TCGA-CN-6995-01 9 95027219 95027219 G C IARS Silent p.T564T 0.19 TCGA-CN-6995-01 9 95274325 95274325 T A ECM2 Missense_Mutation p.T380S 0.18 tolerated(0.2) benign(0.05) TCGA-CN-6995-01 X 101395629 101395629 G T TCEAL6 3'UTR 0.69 TCGA-CN-6995-01 X 105178437 105178437 G T NRK Splice_Site p.X1168_splice 0.60 TCGA-CN-6995-01 X 120181945 120181945 G A GLUD2 Missense_Mutation p.R136Q 0.72 deleterious(0.02) possibly_damaging(0.815) TCGA-CN-6995-01 X 14708939 14708939 G A GLRA2 Silent p.K346K 0.53 TCGA-CN-6995-01 X 148585743 148585743 G C IDS Missense_Mutation p.P62A 0.29 deleterious(0) probably_damaging(0.986) TCGA-CN-6995-01 X 151806746 151806746 G A GABRQ Silent p.P30P 0.45 TCGA-CN-6995-01 X 152226119 152226119 T A PNMA3 Nonsense_Mutation p.L236* 0.51 TCGA-CN-6995-01 X 155233507 155233507 G T IL9R Silent p.L140L 0.35 TCGA-CN-6995-01 X 23897090 23897091 - GCTGGCTC APOO Frame_Shift_Ins p.L60Rfs*41 0.29 TCGA-CN-6995-01 X 49955614 49955614 C G AKAP4 Missense_Mutation p.A852P 0.59 tolerated(0.12) possibly_damaging(0.707) TCGA-CN-6995-01 X 54957634 54957634 C T TRO Intron 0.39 TCGA-CN-6995-01 X 57934507 57934507 G C ZXDA Missense_Mutation p.S783C 0.59 deleterious(0.03) possibly_damaging(0.867) TCGA-CN-6995-01 X 70612767 70612767 A G TAF1 Missense_Mutation p.T1012A 0.64 deleterious(0) possibly_damaging(0.845) TCGA-CN-6995-01 X 73064128 73064128 G C XIST RNA 0.54 TCGA-CN-6995-01 X 73962848 73962848 G T KIAA2022 Missense_Mutation p.S515Y 0.38 deleterious(0.01) benign(0.311) TCGA-CN-6995-01 X 85969652 85969652 A G DACH2 Missense_Mutation p.T345A 0.47 deleterious(0.04) possibly_damaging(0.826) TCGA-CN-6996-01 10 52576013 52576013 G A A1CF Silent p.V306V 0.28 TCGA-CN-6996-01 10 70960106 70960106 G A SUPV3L1 Missense_Mutation p.E457K 0.24 tolerated(0.14) benign(0.196) TCGA-CN-6996-01 11 12901270 12901270 G T TEAD1 Missense_Mutation p.D116Y 0.08 deleterious(0) probably_damaging(0.94) TCGA-CN-6996-01 11 62293150 62293150 T C AHNAK Silent p.E2913E 0.20 TCGA-CN-6996-01 11 82644784 82644784 G C C11orf82 Missense_Mutation p.D802H 0.11 tolerated(0.11) benign(0.086) TCGA-CN-6996-01 12 112150388 112150388 G A ACAD10 Silent p.V290V 0.11 TCGA-CN-6996-01 12 22602593 22602593 A G C2CD5 3'UTR 0.36 TCGA-CN-6996-01 12 49434776 49434776 C G KMT2D Missense_Mutation p.E2259D 0.07 possibly_damaging(0.713) TCGA-CN-6996-01 13 60545216 60545216 G A DIAPH3 Missense_Mutation p.P577S 0.14 tolerated(0.2) benign(0.008) TCGA-CN-6996-01 13 76419476 76419476 T C LMO7 Missense_Mutation p.S1138P 0.24 deleterious(0) probably_damaging(0.998) TCGA-CN-6996-01 14 107170012 107170012 G A IGHV1-69 Silent p.T90T 0.12 TCGA-CN-6996-01 14 23243214 23243214 C T SLC7A7 Missense_Mutation p.G453S 0.27 tolerated(0.07) probably_damaging(0.992) TCGA-CN-6996-01 14 58605875 58605875 G A C14orf37 Silent p.L68L 0.22 TCGA-CN-6996-01 15 68503628 68503628 T A CLN6 Missense_Mutation p.Y172F 0.26 tolerated(0.11) probably_damaging(0.987) TCGA-CN-6996-01 15 74709052 74709052 G C SEMA7A Missense_Mutation p.P222R 0.20 deleterious(0) probably_damaging(1) TCGA-CN-6996-01 16 231145 231145 T C HBQ1 3'UTR 0.20 TCGA-CN-6996-01 16 27561047 27561047 C T GTF3C1 Silent p.P55P 0.12 TCGA-CN-6996-01 17 44592176 44592176 C T LRRC37A2 Missense_Mutation p.L700F 0.30 tolerated(0.11) benign(0.012) TCGA-CN-6996-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.39 deleterious(0) probably_damaging(1) TCGA-CN-6996-01 19 10398606 10398606 C T ICAM4 Intron 0.18 TCGA-CN-6996-01 19 58232120 58232120 C T ZNF671 Missense_Mutation p.R445K 0.22 deleterious(0.03) benign(0.021) TCGA-CN-6996-01 1 11766403 11766403 C T DRAXIN Missense_Mutation p.P30S 0.21 tolerated(0.31) possibly_damaging(0.776) TCGA-CN-6996-01 1 186648488 186648488 G A PTGS2 Silent p.T45T 0.40 TCGA-CN-6996-01 1 235324259 235324259 G C RBM34 Silent p.L59L 0.16 TCGA-CN-6996-01 1 27874932 27874932 C T AHDC1 Missense_Mutation p.G1232D 0.22 deleterious(0) probably_damaging(0.969) TCGA-CN-6996-01 1 78433858 78433858 G A FUBP1 Nonsense_Mutation p.Q81* 0.16 TCGA-CN-6996-01 20 2816812 2816812 C T PCED1A Silent p.Q330Q 0.23 TCGA-CN-6996-01 20 47266745 47266745 C T PREX1 Splice_Site p.X940_splice 0.25 TCGA-CN-6996-01 22 46725347 46725347 C T GTSE1 Silent p.C673C 0.24 TCGA-CN-6996-01 2 11053827 11053827 C T KCNF1 Silent p.H425H 0.17 TCGA-CN-6996-01 2 158140861 158140861 G C GALNT5 Missense_Mutation p.V508L 0.25 deleterious(0) benign(0.346) TCGA-CN-6996-01 2 165987855 165987855 C G SCN3A Missense_Mutation p.E822Q 0.14 tolerated(0.74) probably_damaging(0.998) TCGA-CN-6996-01 2 203332371 203332371 A G BMPR2 Missense_Mutation p.N126S 0.29 deleterious(0) probably_damaging(0.999) TCGA-CN-6996-01 2 222321461 222321461 C T EPHA4 Missense_Mutation p.R492Q 0.17 tolerated(0.06) benign(0.027) TCGA-CN-6996-01 2 27715571 27715571 C A FNDC4 Nonsense_Mutation p.E211* 0.25 TCGA-CN-6996-01 2 74653510 74653510 T C RTKN Missense_Mutation p.T518A 0.22 deleterious(0.04) probably_damaging(0.993) TCGA-CN-6996-01 2 74654585 74654585 C T RTKN Nonsense_Mutation p.W407* 0.23 TCGA-CN-6996-01 2 89100762 89100766 TGAAT - ANKRD36BP2 RNA 0.18 TCGA-CN-6996-01 2 95542524 95542524 C T TEKT4 3'UTR 0.28 TCGA-CN-6996-01 3 120394679 120394679 G A HGD Missense_Mutation p.S16L 0.22 deleterious(0) probably_damaging(0.994) TCGA-CN-6996-01 3 138383967 138383967 A C PIK3CB Silent p.A861A 0.20 TCGA-CN-6996-01 3 180693130 180693130 G A FXR1 Missense_Mutation p.E545K 0.20 deleterious_low_confidence(0) benign(0.223) TCGA-CN-6996-01 3 42679782 42679783 AG - NKTR Frame_Shift_Del p.N864Sfs*3 0.12 TCGA-CN-6996-01 4 110866357 110866357 T A EGF Missense_Mutation p.F289Y 0.24 tolerated(0.21) benign(0.418) TCGA-CN-6996-01 4 113533743 113533743 C G C4orf21 Silent p.V868V 0.15 TCGA-CN-6996-01 4 55964338 55964338 G T KDR Missense_Mutation p.S825R 0.19 deleterious(0) possibly_damaging(0.594) TCGA-CN-6996-01 4 7774605 7774605 G A AFAP1 Missense_Mutation p.A732V 0.08 deleterious(0) probably_damaging(0.974) TCGA-CN-6996-01 4 83849335 83849335 C G LIN54 Missense_Mutation p.E724Q 0.06 tolerated(0.09) probably_damaging(0.998) TCGA-CN-6996-01 5 118872146 118872146 A C HSD17B4 Missense_Mutation p.K699N 0.23 tolerated(0.22) benign(0.142) TCGA-CN-6996-01 5 140536957 140536957 G T PCDHB17 Missense_Mutation p.V461F 0.13 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CN-6996-01 5 150275429 150275429 C A ZNF300 Missense_Mutation p.V474F 0.14 deleterious(0) benign(0.156) TCGA-CN-6996-01 5 98115428 98115428 G A RGMB Missense_Mutation p.R135Q 0.11 deleterious(0.01) benign(0.105) TCGA-CN-6996-01 6 118887049 118887049 T - CEP85L Frame_Shift_Del p.K224Nfs*32 0.26 TCGA-CN-6996-01 6 47501441 47501441 T G CD2AP Missense_Mutation p.L90R 0.27 deleterious(0) possibly_damaging(0.905) TCGA-CN-6996-01 6 86387071 86387071 A C SNHG5 Intron 0.08 TCGA-CN-6996-01 7 34118794 34118794 A G BMPER Silent p.K468K 0.17 TCGA-CN-6996-01 7 73523259 73523259 C T LIMK1 Missense_Mutation p.H393Y 0.33 deleterious(0) probably_damaging(0.942) TCGA-CN-6996-01 8 101299799 101299799 C T RNF19A Missense_Mutation p.E202K 0.07 deleterious(0.03) probably_damaging(0.995) TCGA-CN-6996-01 8 48353089 48353089 G A SPIDR Missense_Mutation p.R361Q 0.18 deleterious(0) benign(0.073) TCGA-CN-6996-01 8 72267106 72267106 C T EYA1 Missense_Mutation p.R12H 0.29 tolerated_low_confidence(0.07) benign(0.012) TCGA-CN-6996-01 9 130507309 130507309 C T SH2D3C Missense_Mutation p.R445H 0.55 tolerated(0.05) benign(0.176) TCGA-CN-6996-01 9 135203150 135203150 C G SETX Missense_Mutation p.E1279Q 0.12 tolerated(0.07) benign(0.391) TCGA-CN-6996-01 9 21971208 21971208 C T CDKN2A Splice_Site p.X51_splice 0.53 TCGA-CN-6996-01 9 84532386 84532386 C G SPATA31D5P RNA 0.16 TCGA-CN-6996-01 X 119388597 119388597 G C ZBTB33 Missense_Mutation p.D443H 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-CN-6996-01 X 17710476 17710476 G A NHS Missense_Mutation p.R247H 0.30 deleterious(0) possibly_damaging(0.855) TCGA-CN-6996-01 X 19373621 19373621 G C PDHA1 Missense_Mutation p.R291T 0.05 tolerated(0.13) benign(0.134) TCGA-CN-6996-01 X 47272940 47272940 A G ZNF157 Missense_Mutation p.R490G 0.23 deleterious(0) probably_damaging(0.985) TCGA-CN-6996-01 X 69826836 69826836 C T TEX11 Missense_Mutation p.M656I 0.08 deleterious(0.02) benign(0.353) TCGA-CN-6997-01 10 105362339 105362339 T A SH3PXD2A Missense_Mutation p.Y851F 0.45 tolerated(0.51) probably_damaging(0.995) TCGA-CN-6997-01 10 121207759 121207759 C T GRK5 Missense_Mutation p.P464L 0.42 deleterious(0) benign(0.004) TCGA-CN-6997-01 10 121411327 121411327 C T BAG3 Missense_Mutation p.T47I 0.56 deleterious(0) probably_damaging(0.999) TCGA-CN-6997-01 10 129845878 129845878 G C PTPRE Intron 0.24 TCGA-CN-6997-01 10 26377179 26377179 G T MYO3A Missense_Mutation p.L469F 0.39 deleterious(0) probably_damaging(0.955) TCGA-CN-6997-01 10 28342878 28342878 G A MPP7 3'UTR 0.25 TCGA-CN-6997-01 10 70514524 70514524 T A CCAR1 Silent p.A466A 0.42 TCGA-CN-6997-01 10 70728814 70728814 A G DDX21 Silent p.K391K 0.39 TCGA-CN-6997-01 11 100169994 100169994 C T CNTN5 Missense_Mutation p.S829F 0.81 deleterious(0.01) probably_damaging(0.975) TCGA-CN-6997-01 11 108380450 108380450 G A EXPH5 Silent p.N1928N 0.79 TCGA-CN-6997-01 11 118263519 118263519 C T UBE4A Missense_Mutation p.P1002S 0.84 deleterious(0) probably_damaging(0.997) TCGA-CN-6997-01 11 121058640 121058640 C T TECTA Silent p.Y2033Y 0.83 TCGA-CN-6997-01 11 1261156 1261156 G A MUC5B Silent p.A1237A 0.22 TCGA-CN-6997-01 11 128709211 128709211 C G KCNJ1 Missense_Mutation p.V329L 0.55 tolerated(0.43) probably_damaging(0.995) TCGA-CN-6997-01 11 5153166 5153166 G A OR52A5 Missense_Mutation p.A236V 0.27 deleterious(0.01) possibly_damaging(0.654) TCGA-CN-6997-01 11 55322553 55322553 G T OR4C15 Silent p.G257G 0.39 TCGA-CN-6997-01 11 55433051 55433051 C T OR4C6 Missense_Mutation p.R137W 0.73 tolerated_low_confidence(0.08) benign(0.008) TCGA-CN-6997-01 11 621106 621106 C T CDHR5 Missense_Mutation p.G255R 0.44 deleterious(0) possibly_damaging(0.856) TCGA-CN-6997-01 11 65272655 65272655 C T MALAT1 RNA 0.28 TCGA-CN-6997-01 11 65482325 65482325 G A KAT5 Missense_Mutation p.E325K 0.27 deleterious(0) probably_damaging(0.982) TCGA-CN-6997-01 11 78516412 78516412 C A TENM4 Missense_Mutation p.G702C 0.67 deleterious(0) probably_damaging(0.95) TCGA-CN-6997-01 12 12278294 12278294 C G LRP6 Missense_Mutation p.R1462P 0.43 deleterious(0) probably_damaging(0.986) TCGA-CN-6997-01 12 124104018 124104018 T C DDX55 Missense_Mutation p.L458P 0.39 deleterious(0) probably_damaging(0.996) TCGA-CN-6997-01 12 1291088 1291088 C T ERC1 Intron 0.36 TCGA-CN-6997-01 12 133384625 133384625 T C GOLGA3 Missense_Mutation p.M344V 0.46 tolerated_low_confidence(0.35) benign(0.001) TCGA-CN-6997-01 12 25047338 25047338 T G BCAT1 Silent p.G62G 0.25 TCGA-CN-6997-01 12 26781079 26781079 C T ITPR2 Missense_Mutation p.R984K 0.34 deleterious(0.03) probably_damaging(0.976) TCGA-CN-6997-01 12 27234247 27234247 T C C12orf71 Missense_Mutation p.I224V 0.41 tolerated(1) benign(0.001) TCGA-CN-6997-01 12 49420108 49420108 C T KMT2D Missense_Mutation p.R5214H 0.40 unknown(0) TCGA-CN-6997-01 12 53237950 53237950 G A KRT78 Missense_Mutation p.T325M 0.45 deleterious(0) possibly_damaging(0.824) TCGA-CN-6997-01 12 53875912 53875913 - T MAP3K12 Frame_Shift_Ins p.S798Kfs*2 0.29 TCGA-CN-6997-01 12 57604642 57604642 T C LRP1 Missense_Mutation p.L4299P 0.07 benign(0.333) TCGA-CN-6997-01 12 58021951 58021951 C T B4GALNT1 Missense_Mutation p.R366Q 0.36 deleterious(0.02) possibly_damaging(0.536) TCGA-CN-6997-01 12 6438514 6438514 G A TNFRSF1A Silent p.P444P 0.25 TCGA-CN-6997-01 12 72038823 72038823 T A ZFC3H1 Missense_Mutation p.E371D 0.38 tolerated(0.05) probably_damaging(0.978) TCGA-CN-6997-01 12 78400648 78400648 C - NAV3 Frame_Shift_Del p.P444Lfs*48 0.27 TCGA-CN-6997-01 12 98928061 98928061 G A TMPO Missense_Mutation p.G676R 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-6997-01 13 23905802 23905802 T C SACS Silent p.E4071E 0.36 TCGA-CN-6997-01 13 26967609 26967609 A G CDK8 Missense_Mutation p.Q251R 0.39 deleterious(0.01) possibly_damaging(0.529) TCGA-CN-6997-01 13 28913349 28913349 T C FLT1 Missense_Mutation p.Y815C 0.35 deleterious(0) probably_damaging(0.969) TCGA-CN-6997-01 13 32798394 32798394 G A FRY Silent p.T1596T 0.47 TCGA-CN-6997-01 13 46577305 46577305 C G ZC3H13 Missense_Mutation p.E305Q 0.04 unknown(0) TCGA-CN-6997-01 13 92408604 92408604 C T GPC5 Nonsense_Mutation p.Q404* 0.31 TCGA-CN-6997-01 14 23451332 23451332 C - AJUBA Frame_Shift_Del p.R50Efs*192 0.49 TCGA-CN-6997-01 14 51227017 51227017 T A NIN Missense_Mutation p.N653Y 0.75 deleterious(0.03) possibly_damaging(0.694) TCGA-CN-6997-01 15 72534499 72534499 T C PARP6 Silent p.E568E 0.58 TCGA-CN-6997-01 16 24580072 24580072 A G RBBP6 Silent p.K687K 0.31 TCGA-CN-6997-01 16 51171062 51171062 G C SALL1 Silent p.T1312T 0.39 TCGA-CN-6997-01 16 51174418 51174418 G A SALL1 Missense_Mutation p.T572M 0.33 deleterious(0.02) possibly_damaging(0.815) TCGA-CN-6997-01 16 67682065 67682065 C A RLTPR Silent p.T394T 0.48 TCGA-CN-6997-01 16 68336300 68336300 T C SLC7A6OS Silent p.G261G 0.44 TCGA-CN-6997-01 16 85687968 85687968 G T GSE1 Missense_Mutation p.A171S 0.32 tolerated(0.43) unknown(0) TCGA-CN-6997-01 16 85687969 85687969 C T GSE1 Missense_Mutation p.A171V 0.32 tolerated(0.09) unknown(0) TCGA-CN-6997-01 17 10364246 10364246 T A MYH4 Silent p.P378P 0.30 TCGA-CN-6997-01 17 20911270 20911270 G C USP22 Missense_Mutation p.I381M 0.49 deleterious(0) probably_damaging(0.998) TCGA-CN-6997-01 17 32688843 32688843 T G CCL1 Missense_Mutation p.Y50S 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-CN-6997-01 17 32953362 32953362 G A TMEM132E Missense_Mutation p.G95E 0.24 deleterious(0) probably_damaging(1) TCGA-CN-6997-01 17 37842182 37842182 T A PGAP3 Missense_Mutation p.H91L 0.41 deleterious(0.01) possibly_damaging(0.772) TCGA-CN-6997-01 17 47243530 47243530 C T B4GALNT2 Missense_Mutation p.L397F 0.35 deleterious(0) probably_damaging(0.998) TCGA-CN-6997-01 17 48916922 48916922 C A WFIKKN2 Silent p.A91A 0.36 TCGA-CN-6997-01 17 51901863 51901863 C A KIF2B Missense_Mutation p.P490H 0.36 tolerated(0.09) possibly_damaging(0.868) TCGA-CN-6997-01 17 7404147 7404147 A G POLR2A Missense_Mutation p.I621V 0.26 benign(0.381) TCGA-CN-6997-01 17 74270201 74270201 C G QRICH2 3'UTR 0.38 TCGA-CN-6997-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.89 TCGA-CN-6997-01 18 2891658 2891658 C A EMILIN2 Missense_Mutation p.N511K 0.42 tolerated(0.4) benign(0.035) TCGA-CN-6997-01 18 3273065 3273065 A G MYL12B Missense_Mutation p.M57V 0.81 tolerated(0.32) benign(0.133) TCGA-CN-6997-01 18 43224005 43224005 C T SLC14A2 Missense_Mutation p.L411F 0.40 deleterious(0) probably_damaging(0.962) TCGA-CN-6997-01 18 47390534 47390534 G A MYO5B Missense_Mutation p.R1274W 0.41 deleterious(0.01) benign(0.339) TCGA-CN-6997-01 18 47800213 47800214 - AC MBD1 Frame_Shift_Ins p.W390Sfs*33 0.34 TCGA-CN-6997-01 18 6976021 6976021 G A LAMA1 Missense_Mutation p.S2135F 0.08 deleterious(0.02) possibly_damaging(0.905) TCGA-CN-6997-01 18 73000645 73000645 G C TSHZ1 3'UTR 0.35 TCGA-CN-6997-01 19 10823850 10823850 C T QTRT1 Silent p.F372F 0.43 TCGA-CN-6997-01 19 1556345 1556345 G A MEX3D Silent p.R391R 0.53 TCGA-CN-6997-01 19 15733053 15733053 G C CYP4F8 Intron 0.37 TCGA-CN-6997-01 19 17309083 17309083 G A MYO9B Missense_Mutation p.A1402T 0.30 tolerated(0.16) benign(0.005) TCGA-CN-6997-01 19 17763482 17763482 C A UNC13A Missense_Mutation p.R466L 0.34 tolerated_low_confidence(0.06) benign(0.007) TCGA-CN-6997-01 19 19905274 19905274 A G ZNF506 3'UTR 0.41 TCGA-CN-6997-01 19 20003622 20003622 C G ZNF253 3'UTR 0.26 TCGA-CN-6997-01 19 21606219 21606219 C G ZNF493 Missense_Mutation p.T253S 0.27 tolerated(0.25) benign(0.247) TCGA-CN-6997-01 19 23329204 23329204 A G ZNF730 Missense_Mutation p.E453G 0.42 deleterious(0) benign(0.096) TCGA-CN-6997-01 19 23433160 23433160 G A ZNF724P 5'UTR 0.42 TCGA-CN-6997-01 19 23837318 23837318 C A ZNF675 Missense_Mutation p.M139I 0.45 deleterious(0.04) benign(0) TCGA-CN-6997-01 19 39964118 39964118 C A SUPT5H Missense_Mutation p.Q817K 0.67 tolerated(0.34) benign(0.326) TCGA-CN-6997-01 19 43965448 43965448 A G LYPD3 3'UTR 0.88 TCGA-CN-6997-01 19 44127586 44127586 A T CADM4 Missense_Mutation p.Y355N 0.81 deleterious(0) possibly_damaging(0.832) TCGA-CN-6997-01 19 47584783 47584783 T A ZC3H4 Missense_Mutation p.E476V 0.61 unknown(0) TCGA-CN-6997-01 19 51728579 51728579 C T CD33 Missense_Mutation p.P48L 0.14 tolerated(0.31) benign(0.017) TCGA-CN-6997-01 19 53740901 53740901 G A ZNF677 Missense_Mutation p.S360L 0.75 deleterious(0.01) probably_damaging(0.981) TCGA-CN-6997-01 19 55085312 55085312 C G LILRA2 5'UTR 0.63 TCGA-CN-6997-01 19 8993495 8993495 C T MUC16 Missense_Mutation p.R13865H 0.56 possibly_damaging(0.551) TCGA-CN-6997-01 19 9452988 9452988 T G ZNF559 Missense_Mutation p.H287Q 0.37 deleterious(0) benign(0.006) TCGA-CN-6997-01 1 103444413 103444413 T C COL11A1 Intron 0.57 TCGA-CN-6997-01 1 16258889 16258889 A T SPEN Nonsense_Mutation p.K2052* 0.73 TCGA-CN-6997-01 1 1686106 1686106 C T NADK Silent p.L385L 0.74 TCGA-CN-6997-01 1 16893786 16893786 T A NBPF1 Missense_Mutation p.R909S 0.09 tolerated(0.05) benign(0.041) TCGA-CN-6997-01 1 169446399 169446399 C A SLC19A2 Missense_Mutation p.E267D 0.42 tolerated(0.37) benign(0.009) TCGA-CN-6997-01 1 169511140 169511140 C T F5 Missense_Mutation p.R1063K 0.33 tolerated_low_confidence(0.52) benign(0.006) TCGA-CN-6997-01 1 201356297 201356297 G A LAD1 Silent p.S64S 0.33 TCGA-CN-6997-01 1 231406686 231406686 A G GNPAT Missense_Mutation p.I488V 0.42 tolerated(1) benign(0.001) TCGA-CN-6997-01 1 244217124 244217125 - A ZBTB18 Frame_Shift_Ins p.R17Kfs*18 0.32 TCGA-CN-6997-01 1 247150864 247150864 T C ZNF695 Missense_Mutation p.H318R 0.42 deleterious(0) probably_damaging(0.929) TCGA-CN-6997-01 1 38265848 38265848 C G MANEAL Missense_Mutation p.I449M 0.72 tolerated(0.15) possibly_damaging(0.655) TCGA-CN-6997-01 1 76276476 76276476 T C MSH4 Missense_Mutation p.I228T 0.69 deleterious(0) possibly_damaging(0.776) TCGA-CN-6997-01 1 85733454 85733454 G A BCL10 Silent p.I186I 0.62 TCGA-CN-6997-01 1 8926383 8926385 CCA - ENO1 In_Frame_Del p.V207del 0.66 TCGA-CN-6997-01 1 92446620 92446620 C A BRDT Missense_Mutation p.S545R 0.72 tolerated(1) benign(0) TCGA-CN-6997-01 20 20013295 20013295 A G NAA20 Missense_Mutation p.Y150C 0.44 deleterious(0) probably_damaging(0.928) TCGA-CN-6997-01 20 23065386 23065386 C T CD93 Missense_Mutation p.D482N 0.46 tolerated(0.47) benign(0.002) TCGA-CN-6997-01 20 23856811 23856811 C T CST5 3'UTR 0.38 TCGA-CN-6997-01 20 25485703 25485703 T C NINL Missense_Mutation p.T177A 0.31 tolerated(0.74) benign(0.007) TCGA-CN-6997-01 20 279516 279516 A G ZCCHC3 3'UTR 0.35 TCGA-CN-6997-01 20 30193969 30193969 C G ID1 3'UTR 0.31 TCGA-CN-6997-01 20 47253046 47253046 C A PREX1 Silent p.T1374T 0.13 TCGA-CN-6997-01 20 58342414 58342414 C T PHACTR3 Missense_Mutation p.P239S 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-CN-6997-01 20 9353027 9353027 T A PLCB4 Missense_Mutation p.D221E 0.27 tolerated(0.18) probably_damaging(0.998) TCGA-CN-6997-01 21 22849748 22849748 C G NCAM2 Missense_Mutation p.T678R 0.51 deleterious(0) probably_damaging(0.998) TCGA-CN-6997-01 21 34877966 34877966 C G GART Missense_Mutation p.S876T 0.75 tolerated(0.6) benign(0.001) TCGA-CN-6997-01 21 42780169 42780169 G A MX2 3'UTR 0.63 TCGA-CN-6997-01 22 21178651 21178651 G A PI4KA Missense_Mutation p.S140F 0.36 deleterious(0.02) possibly_damaging(0.897) TCGA-CN-6997-01 22 31059379 31059379 A G DUSP18 3'UTR 0.36 TCGA-CN-6997-01 2 103274384 103274384 C A SLC9A2 Silent p.V217V 0.42 TCGA-CN-6997-01 2 128747419 128747419 G C SAP130 Missense_Mutation p.S526C 0.37 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CN-6997-01 2 152534129 152534129 C A NEB Missense_Mutation p.D1242Y 0.32 probably_damaging(1) TCGA-CN-6997-01 2 158390408 158390408 C G ACVR1C 3'UTR 0.43 TCGA-CN-6997-01 2 168103945 168103945 G C XIRP2 Missense_Mutation p.E2015Q 0.43 possibly_damaging(0.804) TCGA-CN-6997-01 2 169764494 169764494 T A G6PC2 Missense_Mutation p.F325I 0.14 deleterious(0) probably_damaging(0.998) TCGA-CN-6997-01 2 179443989 179443989 G T TTN Missense_Mutation p.P22590T 0.38 TCGA-CN-6997-01 2 179452482 179452482 A G TTN Missense_Mutation p.I21185T 0.38 TCGA-CN-6997-01 2 179604933 179604933 C G TTN Missense_Mutation p.E4343Q 0.41 TCGA-CN-6997-01 2 187506311 187506311 C T ITGAV Silent p.F385F 0.44 TCGA-CN-6997-01 2 219612322 219612322 A G TTLL4 Missense_Mutation p.Y751C 0.70 deleterious(0) probably_damaging(1) TCGA-CN-6997-01 2 24056880 24056880 C A ATAD2B Missense_Mutation p.G546V 0.35 deleterious(0) probably_damaging(1) TCGA-CN-6997-01 2 24056881 24056881 C G ATAD2B Missense_Mutation p.G546R 0.35 deleterious(0) probably_damaging(1) TCGA-CN-6997-01 2 79385863 79385863 G T REG3A Silent p.R37R 0.29 TCGA-CN-6997-01 3 100963028 100963028 G C IMPG2 Nonsense_Mutation p.S716* 0.67 TCGA-CN-6997-01 3 113721347 113721347 G A KIAA1407 Missense_Mutation p.R673W 0.83 deleterious(0.02) benign(0.109) TCGA-CN-6997-01 3 133666147 133666147 G C SLCO2A1 Missense_Mutation p.F416L 0.38 tolerated(0.34) probably_damaging(1) TCGA-CN-6997-01 3 140998227 140998227 C T ACPL2 Silent p.A82A 0.83 TCGA-CN-6997-01 3 183995809 183995809 C A ECE2 Missense_Mutation p.A310D 0.90 tolerated(0.13) probably_damaging(0.986) TCGA-CN-6997-01 3 51743449 51743449 G A GRM2 Silent p.Q150Q 0.60 TCGA-CN-6997-01 4 113199415 113199415 G A TIFA Missense_Mutation p.S53F 0.63 deleterious(0.02) possibly_damaging(0.646) TCGA-CN-6997-01 4 144106780 144106780 G - USP38 Frame_Shift_Del p.V60Wfs*42 0.45 TCGA-CN-6997-01 4 71201610 71201610 T C CABS1 Missense_Mutation p.L285P 0.58 tolerated(0.09) benign(0) TCGA-CN-6997-01 5 140812032 140812032 C T PCDHGA12 Missense_Mutation p.T569M 0.69 deleterious_low_confidence(0.02) benign(0.189) TCGA-CN-6997-01 5 168112761 168112761 G A SLIT3 Silent p.F1162F 0.64 TCGA-CN-6997-01 5 176882830 176882830 G A PRR7 Missense_Mutation p.R178H 0.09 tolerated(0.22) possibly_damaging(0.908) TCGA-CN-6997-01 5 23526620 23526620 G A PRDM9 Missense_Mutation p.A475T 0.30 tolerated(0.26) possibly_damaging(0.699) TCGA-CN-6997-01 5 7789843 7789843 G A ADCY2 Missense_Mutation p.R853H 0.31 deleterious(0.02) possibly_damaging(0.819) TCGA-CN-6997-01 6 117658469 117658469 G A ROS1 Missense_Mutation p.S1705L 0.45 deleterious(0.02) possibly_damaging(0.685) TCGA-CN-6997-01 6 122766322 122766322 T C SERINC1 Missense_Mutation p.Y410C 0.52 deleterious(0) possibly_damaging(0.838) TCGA-CN-6997-01 6 129826387 129826387 G C LAMA2 Missense_Mutation p.D2864H 0.47 deleterious(0) probably_damaging(0.994) TCGA-CN-6997-01 6 130505272 130505272 G A SAMD3 Silent p.F210F 0.41 TCGA-CN-6997-01 6 136582515 136582515 C A BCLAF1 Missense_Mutation p.G882V 0.18 deleterious(0) probably_damaging(0.979) TCGA-CN-6997-01 6 167790110 167790110 C A TCP10 Missense_Mutation p.R167L 0.60 tolerated(0.99) benign(0.103) TCGA-CN-6997-01 6 26216820 26216831 CCTTCTTGGAAC - HIST1H2BG In_Frame_Del p.G14_K17del 0.41 TCGA-CN-6997-01 6 30043353 30043353 G A RNF39 Missense_Mutation p.P72S 0.59 tolerated(0.44) benign(0.003) TCGA-CN-6997-01 7 107696109 107696109 G C LAMB4 Missense_Mutation p.F1241L 0.33 tolerated(0.53) benign(0.004) TCGA-CN-6997-01 7 111540505 111540505 C T DOCK4 Missense_Mutation p.E469K 0.46 deleterious(0) possibly_damaging(0.845) TCGA-CN-6997-01 7 115624462 115624462 G C TFEC Missense_Mutation p.L12V 0.33 tolerated(0.05) benign(0.019) TCGA-CN-6997-01 7 15599809 15599809 C A AGMO Missense_Mutation p.A72S 0.55 tolerated(0.53) benign(0.002) TCGA-CN-6997-01 7 57529191 57529191 C T ZNF716 Missense_Mutation p.H342Y 0.64 deleterious(0) probably_damaging(0.996) TCGA-CN-6997-01 7 86493648 86493648 G A GRM3 Missense_Mutation p.D873N 0.37 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-CN-6997-01 7 87910251 87910251 C T STEAP4 Nonsense_Mutation p.W376* 0.29 TCGA-CN-6997-01 7 99097557 99097557 G T ZNF394 Missense_Mutation p.P54T 0.45 deleterious(0.05) benign(0.085) TCGA-CN-6997-01 8 110457673 110457673 G T PKHD1L1 Missense_Mutation p.G1859C 0.83 deleterious(0) probably_damaging(0.967) TCGA-CN-6997-01 8 127569333 127569333 G A FAM84B Missense_Mutation p.S101L 0.65 tolerated(0.16) benign(0.001) TCGA-CN-6997-01 8 15601046 15601046 G T TUSC3 Splice_Site p.X288_splice 0.14 TCGA-CN-6997-01 9 100090306 100090306 G T CCDC180 Nonsense_Mutation p.E600* 0.41 TCGA-CN-6997-01 9 119976967 119976967 C T ASTN2 Missense_Mutation p.A229T 0.46 tolerated_low_confidence(1) unknown(0) TCGA-CN-6997-01 9 130829161 130829161 C G NAIF1 Missense_Mutation p.D74H 0.85 deleterious(0) probably_damaging(0.999) TCGA-CN-6997-01 9 21971098 21971098 C G CDKN2A Missense_Mutation p.R87P 0.64 deleterious(0) probably_damaging(1) TCGA-CN-6997-01 9 34371549 34371549 C G KIAA1161 Missense_Mutation p.G431R 0.22 deleterious(0) probably_damaging(1) TCGA-CN-6997-01 9 74332991 74332991 G A TMEM2 Nonsense_Mutation p.R758* 0.43 TCGA-CN-6997-01 9 79853254 79853254 G T VPS13A Missense_Mutation p.A618S 0.44 tolerated(1) benign(0) TCGA-CN-6997-01 X 122774415 122774415 T C THOC2 Missense_Mutation p.S574G 0.92 tolerated(0.18) benign(0.201) TCGA-CN-6997-01 X 135404984 135404984 G C GPR112 Missense_Mutation p.D40H 0.83 tolerated(0.06) probably_damaging(0.969) TCGA-CN-6998-01 10 106982909 106982909 G A SORCS3 Missense_Mutation p.V924I 0.25 tolerated(0.16) probably_damaging(0.927) TCGA-CN-6998-01 10 21804522 21804522 C G SKIDA1 Missense_Mutation p.E744Q 0.34 tolerated(0.14) unknown(0) TCGA-CN-6998-01 10 71332754 71332754 C T NEUROG3 Missense_Mutation p.E16K 0.26 deleterious_low_confidence(0.03) benign(0.115) TCGA-CN-6998-01 11 10022466 10022466 C G SBF2 Missense_Mutation p.E286Q 0.33 deleterious(0) probably_damaging(0.976) TCGA-CN-6998-01 11 108385369 108385369 G C EXPH5 Missense_Mutation p.P289A 0.29 tolerated(0.13) possibly_damaging(0.718) TCGA-CN-6998-01 11 116691458 116691458 G A APOA4 3'UTR 0.40 TCGA-CN-6998-01 11 194459 194459 C G SCGB1C1 3'UTR 0.13 TCGA-CN-6998-01 11 34194744 34194744 C T ABTB2 Missense_Mutation p.R452Q 0.25 deleterious(0.01) benign(0.391) TCGA-CN-6998-01 11 44958408 44958408 C T TP53I11 Missense_Mutation p.G94R 0.27 tolerated(0.47) benign(0.109) TCGA-CN-6998-01 11 61533490 61533490 G A MYRF Silent p.A65A 0.28 TCGA-CN-6998-01 11 65265609 65265609 G C MALAT1 RNA 0.25 TCGA-CN-6998-01 11 65402839 65402839 C T PCNXL3 Missense_Mutation p.R1702C 0.26 deleterious(0) probably_damaging(1) TCGA-CN-6998-01 11 77937653 77937653 G A GAB2 Silent p.P355P 0.30 TCGA-CN-6998-01 11 8704326 8704326 G A RPL27A 5'UTR 0.33 TCGA-CN-6998-01 12 101491682 101491682 G T ANO4 Silent p.V620V 0.30 TCGA-CN-6998-01 12 120172072 120172072 G A CIT Missense_Mutation p.R1083W 0.46 deleterious(0) probably_damaging(0.991) TCGA-CN-6998-01 12 122398488 122398488 C T WDR66 Intron 0.22 TCGA-CN-6998-01 12 31586050 31586050 C T DENND5B Intron 0.32 TCGA-CN-6998-01 12 9840539 9840539 C T CLEC2D Nonsense_Mutation p.Q72* 0.22 TCGA-CN-6998-01 13 98897040 98897040 G A FARP1 Intron 0.67 TCGA-CN-6998-01 14 105849787 105849787 G A PACS2 Missense_Mutation p.E573K 0.73 tolerated(0.14) possibly_damaging(0.769) TCGA-CN-6998-01 14 23444255 23444255 T A AJUBA Missense_Mutation p.N433I 0.63 deleterious(0.02) probably_damaging(0.973) TCGA-CN-6998-01 14 67779302 67779302 G A MPP5 Missense_Mutation p.R367Q 0.75 deleterious(0.01) benign(0.046) TCGA-CN-6998-01 14 94088226 94088226 A G UNC79 Silent p.R1372R 0.66 TCGA-CN-6998-01 15 85198452 85198452 C G NMB 3'UTR 0.62 TCGA-CN-6998-01 16 10862766 10862766 A G TVP23A 3'UTR 0.36 TCGA-CN-6998-01 16 51174768 51174768 C T SALL1 Silent p.A455A 0.44 TCGA-CN-6998-01 16 67235652 67235652 G A ELMO3 Missense_Mutation p.R362Q 0.29 tolerated(0.11) possibly_damaging(0.569) TCGA-CN-6998-01 17 18022714 18022714 C T MYO15A Silent p.G200G 0.23 TCGA-CN-6998-01 17 3101020 3101020 G A OR1A2 Missense_Mutation p.D70N 0.44 deleterious(0) probably_damaging(0.945) TCGA-CN-6998-01 17 40925516 40925516 C T VPS25 Missense_Mutation p.P8L 0.17 deleterious(0) probably_damaging(1) TCGA-CN-6998-01 17 56352927 56352927 C T MPO Silent p.R447R 0.25 TCGA-CN-6998-01 17 73487507 73487507 C A KIAA0195 Missense_Mutation p.L453I 0.36 tolerated(0.07) possibly_damaging(0.507) TCGA-CN-6998-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.64 TCGA-CN-6998-01 19 40741920 40741920 T C AKT2 Missense_Mutation p.Y351C 0.15 deleterious(0) probably_damaging(0.985) TCGA-CN-6998-01 19 44223073 44223073 G A IRGC Silent p.P121P 0.15 TCGA-CN-6998-01 19 46056884 46056884 G A OPA3 Intron 0.14 TCGA-CN-6998-01 19 51914354 51914354 C T SIGLEC10 Silent p.%3D 0.62 TCGA-CN-6998-01 19 5641946 5641946 C T SAFB Nonsense_Mutation p.Q179* 0.49 TCGA-CN-6998-01 19 58352693 58352693 A - ZNF587B Frame_Shift_Del p.D218Ifs*3 0.18 TCGA-CN-6998-01 1 110944121 110944121 G A LAMTOR5 3'UTR 0.36 TCGA-CN-6998-01 1 144814712 144814712 G A NBPF9 Missense_Mutation p.R116Q 0.35 tolerated(0.11) probably_damaging(0.947) TCGA-CN-6998-01 1 156628471 156628471 C T BCAN Silent p.C858C 0.26 TCGA-CN-6998-01 1 15956839 15956839 C T DDI2 Silent p.F96F 0.34 TCGA-CN-6998-01 1 163172649 163172649 C T RGS5 5'UTR 0.20 TCGA-CN-6998-01 1 176833525 176833525 G A ASTN1 Silent p.P1260P 0.27 TCGA-CN-6998-01 1 196311261 196311262 - A KCNT2 Frame_Shift_Ins p.A501Cfs*2 0.25 TCGA-CN-6998-01 1 210971026 210971026 G A KCNH1 Missense_Mutation p.P580L 0.30 deleterious(0.04) benign(0.055) TCGA-CN-6998-01 1 22408230 22408230 G A CDC42 Missense_Mutation p.A41T 0.35 tolerated(0.08) probably_damaging(0.933) TCGA-CN-6998-01 1 38227344 38227344 C T EPHA10 Missense_Mutation p.V195M 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6998-01 1 53972293 53972293 C T GLIS1 Silent p.%3D 0.33 TCGA-CN-6998-01 1 57161705 57161705 A G PRKAA2 Missense_Mutation p.T221A 0.43 tolerated(0.06) benign(0.006) TCGA-CN-6998-01 1 90049999 90049999 T C LRRC8B Missense_Mutation p.L597P 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6998-01 20 22562467 22562467 G A FOXA2 3'UTR 0.36 TCGA-CN-6998-01 20 43752416 43752416 T C WFDC12 3'UTR 0.31 TCGA-CN-6998-01 20 60584189 60584189 A T TAF4 Silent p.S601S 0.28 TCGA-CN-6998-01 20 9360788 9360788 G C PLCB4 Missense_Mutation p.D278H 0.26 tolerated(0.05) possibly_damaging(0.531) TCGA-CN-6998-01 2 125282021 125282021 A G CNTNAP5 Missense_Mutation p.Y489C 0.44 deleterious(0) probably_damaging(0.992) TCGA-CN-6998-01 2 128255753 128255753 C T IWS1 Missense_Mutation p.D510N 0.42 deleterious(0.05) probably_damaging(0.954) TCGA-CN-6998-01 2 136575285 136575285 C T LCT Missense_Mutation p.G445S 0.28 deleterious(0.03) probably_damaging(0.992) TCGA-CN-6998-01 2 149868101 149868101 G A KIF5C Missense_Mutation p.G929R 0.04 deleterious(0.01) benign(0.308) TCGA-CN-6998-01 2 197182030 197182030 C T HECW2 Missense_Mutation p.R801Q 0.24 tolerated(0.08) benign(0.317) TCGA-CN-6998-01 2 223520788 223520788 G A FARSB Missense_Mutation p.P2L 0.65 deleterious(0) probably_damaging(1) TCGA-CN-6998-01 2 233899356 233899356 C T NEU2 Silent p.V244V 0.26 TCGA-CN-6998-01 2 242438109 242438110 - A STK25 Frame_Shift_Ins p.K288* 0.18 TCGA-CN-6998-01 2 28627022 28627022 A G FOSL2 Missense_Mutation p.I51V 0.21 tolerated(1) benign(0.001) TCGA-CN-6998-01 3 113659107 113659107 C G GRAMD1C Nonsense_Mutation p.S608* 0.23 TCGA-CN-6998-01 3 128810100 128810100 C G RAB43 Missense_Mutation p.E160Q 0.21 deleterious(0) probably_damaging(1) TCGA-CN-6998-01 3 134514373 134514373 C A EPHB1 5'UTR 0.56 TCGA-CN-6998-01 3 157815642 157815642 C T SHOX2 3'UTR 0.34 TCGA-CN-6998-01 3 164777066 164777066 C G SI Missense_Mutation p.D390H 0.11 deleterious(0) probably_damaging(1) TCGA-CN-6998-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.67 tolerated(0.11) possibly_damaging(0.529) TCGA-CN-6998-01 3 189349311 189349311 T C TP63 Missense_Mutation p.F3L 0.52 tolerated_low_confidence(0.31) benign(0.002) TCGA-CN-6998-01 3 192516654 192516654 G T MB21D2 Silent p.R333R 0.24 TCGA-CN-6998-01 3 33195134 33195134 G A SUSD5 Silent p.V330V 0.60 TCGA-CN-6998-01 3 49412905 49412905 C G RHOA Missense_Mutation p.E40Q 0.65 deleterious(0.04) possibly_damaging(0.534) TCGA-CN-6998-01 3 50683618 50683618 C T MAPKAPK3 Missense_Mutation p.S251F 0.62 deleterious(0) possibly_damaging(0.628) TCGA-CN-6998-01 3 56651600 56651600 G A CCDC66 Silent p.T768T 0.38 TCGA-CN-6998-01 3 74315641 74315641 G A CNTN3 Nonsense_Mutation p.R993* 0.56 TCGA-CN-6998-01 4 106473798 106473798 G C ARHGEF38 5'UTR 0.25 TCGA-CN-6998-01 4 111397714 111397714 C T ENPEP Silent p.D48D 0.11 TCGA-CN-6998-01 4 187454891 187454891 C T MTNR1A Silent p.P335P 0.27 TCGA-CN-6998-01 4 57182124 57182124 C T KIAA1211 Missense_Mutation p.S819L 0.31 deleterious(0.05) possibly_damaging(0.519) TCGA-CN-6998-01 4 74351714 74351714 C T AFM Silent p.L136L 0.30 TCGA-CN-6998-01 5 140503125 140503125 C T PCDHB4 Silent p.L515L 0.29 TCGA-CN-6998-01 5 140718650 140718650 G C PCDHGA2 Missense_Mutation p.E38Q 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-6998-01 5 145851118 145851118 C T TCERG1 Missense_Mutation p.A527V 0.30 deleterious(0) unknown(0) TCGA-CN-6998-01 5 149514571 149514571 C T PDGFRB Missense_Mutation p.V125M 0.55 tolerated(0.33) benign(0.021) TCGA-CN-6998-01 5 71494372 71494372 G A MAP1B Silent p.P1730P 0.41 TCGA-CN-6998-01 5 76704787 76704787 C G PDE8B Missense_Mutation p.L479V 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-CN-6998-01 5 7870928 7870928 A G MTRR Silent p.L34L 0.44 TCGA-CN-6998-01 5 908535 908535 C T TRIP13 Silent p.R275R 0.24 TCGA-CN-6998-01 6 107956339 107956339 C T SOBP Missense_Mutation p.A764V 0.21 tolerated_low_confidence(0.11) benign(0.002) TCGA-CN-6998-01 6 134350301 134350301 G C SLC2A12 Missense_Mutation p.P221R 0.34 deleterious(0) probably_damaging(1) TCGA-CN-6998-01 6 170156467 170156467 C T ERMARD Silent p.L117L 0.15 TCGA-CN-6998-01 6 26199448 26199448 G A HIST1H2AD Silent p.G8G 0.32 TCGA-CN-6998-01 6 27833460 27833460 C A HIST1H2AL Missense_Mutation p.P110T 0.39 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-CN-6998-01 6 64422967 64422967 T C PHF3 Missense_Mutation p.M1828T 0.41 deleterious(0) benign(0.075) TCGA-CN-6998-01 7 100075277 100075277 C T TSC22D4 Missense_Mutation p.E129K 0.50 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CN-6998-01 7 100320806 100320806 T C EPO 3'UTR 0.30 TCGA-CN-6998-01 7 14026260 14026260 T G ETV1 Intron 0.17 TCGA-CN-6998-01 7 143701794 143701794 G A OR6B1 Silent p.A235A 0.37 TCGA-CN-6998-01 7 149486777 149486777 C T SSPO RNA 0.36 TCGA-CN-6998-01 7 151891214 151891214 C G KMT2C Splice_Site p.X1514_splice 0.24 TCGA-CN-6998-01 7 29105714 29105714 G A CPVL Silent p.G296G 0.20 TCGA-CN-6998-01 8 145948537 145948537 C T ZNF251 Missense_Mutation p.V170M 0.44 tolerated(0.44) possibly_damaging(0.623) TCGA-CN-6998-01 8 77618583 77618583 G A ZFHX4 Missense_Mutation p.G754R 0.56 probably_damaging(0.98) TCGA-CN-6998-01 8 87638274 87638274 C T CNGB3 Silent p.T505T 0.30 TCGA-CN-6998-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.62 TCGA-CN-6998-01 9 77386695 77386695 C T TRPM6 Missense_Mutation p.V1154M 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-CN-6998-01 X 107159287 107159287 G C MID2 Missense_Mutation p.D377H 0.67 deleterious(0.01) possibly_damaging(0.815) TCGA-CN-6998-01 X 132161099 132161099 G C USP26 Missense_Mutation p.H384D 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-CN-6998-01 X 14748491 14748491 G A GLRA2 Missense_Mutation p.A415T 0.05 deleterious(0.02) probably_damaging(1) TCGA-CN-6998-01 X 32591889 32591889 G C DMD Silent p.L559L 0.47 TCGA-CN-A497-01 10 104123467 104123467 C G GBF1 Missense_Mutation p.A672G 0.26 tolerated(0.18) benign(0.002) TCGA-CN-A497-01 10 117885064 117885064 C A GFRA1 Missense_Mutation p.E146D 0.50 tolerated(0.55) benign(0.032) TCGA-CN-A497-01 10 125426259 125426259 G A GPR26 Silent p.L112L 0.37 TCGA-CN-A497-01 10 134751117 134751117 G A TTC40 Missense_Mutation p.T200M 0.37 deleterious(0.01) benign(0.236) TCGA-CN-A497-01 10 18276413 18276413 G T SLC39A12 Missense_Mutation p.G368C 0.32 deleterious(0.01) probably_damaging(1) TCGA-CN-A497-01 10 26507984 26507984 C G GAD2 Missense_Mutation p.A100G 0.34 deleterious(0.03) benign(0.015) TCGA-CN-A497-01 10 30747067 30747067 A G MAP3K8 Missense_Mutation p.I310V 0.45 deleterious(0.05) probably_damaging(0.996) TCGA-CN-A497-01 10 3161029 3161029 A G PFKP Missense_Mutation p.I500V 0.27 deleterious(0.02) benign(0.138) TCGA-CN-A497-01 10 33196033 33196033 G C ITGB1 Intron 0.33 TCGA-CN-A497-01 10 33502571 33502571 C T NRP1 Missense_Mutation p.G453R 0.29 tolerated(0.97) benign(0.085) TCGA-CN-A497-01 10 43015408 43015408 C A ZNF37BP RNA 0.20 TCGA-CN-A497-01 10 46967545 46967545 A G SYT15 Missense_Mutation p.S178P 0.21 deleterious(0.01) probably_damaging(0.936) TCGA-CN-A497-01 10 55581663 55581663 G T PCDH15 Silent p.V1943V 0.31 TCGA-CN-A497-01 10 60558321 60558321 G A BICC1 Splice_Site p.X510_splice 0.28 TCGA-CN-A497-01 10 61007384 61007384 T C FAM13C Missense_Mutation p.K583R 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A497-01 10 81070805 81070805 C T ZMIZ1 Missense_Mutation p.S987F 0.26 benign(0.259) TCGA-CN-A497-01 10 82271934 82271934 G T TSPAN14 Missense_Mutation p.W162L 0.29 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 10 86237392 86237392 A G CCSER2 Missense_Mutation p.Y766C 0.50 deleterious(0.05) probably_damaging(0.999) TCGA-CN-A497-01 10 87487645 87487645 G A GRID1 Silent p.S500S 0.32 TCGA-CN-A497-01 10 92617225 92617225 G T HTR7 Silent p.S68S 0.31 TCGA-CN-A497-01 10 94715404 94715404 C G EXOC6 Missense_Mutation p.T569S 0.33 tolerated(1) benign(0.002) TCGA-CN-A497-01 11 106849364 106849364 C G GUCY1A2 Missense_Mutation p.Q156H 0.14 tolerated(0.06) benign(0.007) TCGA-CN-A497-01 11 1158115 1158115 G T MUC5AC Missense_Mutation p.E365D 0.17 tolerated(0.09) benign(0.088) TCGA-CN-A497-01 11 118495765 118495765 C G PHLDB1 Missense_Mutation p.S157R 0.28 tolerated(0.4) benign(0.002) TCGA-CN-A497-01 11 121016587 121016587 C T TECTA Silent p.A1289A 0.24 TCGA-CN-A497-01 11 125315969 125315969 G A FEZ1 3'UTR 0.32 TCGA-CN-A497-01 11 129245990 129245990 G A BARX2 Silent p.R20R 0.42 TCGA-CN-A497-01 11 131781282 131781282 C A NTM 5'Flank 0.32 TCGA-CN-A497-01 11 1619393 1619393 C T KRTAP5-2 Missense_Mutation p.G30S 0.33 unknown(0) TCGA-CN-A497-01 11 17531213 17531213 G - USH1C Frame_Shift_Del p.P568Hfs*21 0.50 TCGA-CN-A497-01 11 18195471 18195471 T A MRGPRX4 Missense_Mutation p.L223Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-CN-A497-01 11 18955940 18955940 C G MRGPRX1 Missense_Mutation p.R131P 0.37 deleterious(0) possibly_damaging(0.791) TCGA-CN-A497-01 11 20648340 20648340 G C SLC6A5 Silent p.G449G 0.22 TCGA-CN-A497-01 11 22277028 22277028 A G ANO5 Missense_Mutation p.E431G 0.31 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 11 26725436 26725436 C A SLC5A12 Missense_Mutation p.G195V 0.29 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 11 32413565 32413565 C A WT1 Missense_Mutation p.R462L 0.25 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-CN-A497-01 11 33106683 33106683 G A CSTF3 Missense_Mutation p.P702S 0.24 tolerated(0.14) possibly_damaging(0.542) TCGA-CN-A497-01 11 56000229 56000229 T A OR5T2 Missense_Mutation p.S145C 0.38 deleterious(0) benign(0.353) TCGA-CN-A497-01 11 56058244 56058244 G - OR8H1 Frame_Shift_Del p.Q99Rfs*25 0.22 TCGA-CN-A497-01 11 56237967 56237967 T A OR5M3 Missense_Mutation p.N3Y 0.25 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 11 56309893 56309893 T A OR5M11 Missense_Mutation p.S281C 0.28 deleterious(0.02) benign(0.169) TCGA-CN-A497-01 11 59132570 59132570 A G OR5AN1 Silent p.L213L 0.38 TCGA-CN-A497-01 11 6007754 6007754 A T OR52L1 Missense_Mutation p.M136K 0.20 deleterious(0) probably_damaging(0.993) TCGA-CN-A497-01 11 61959555 61959555 G A SCGB1D1 Missense_Mutation p.G28D 0.33 tolerated(0.12) benign(0.078) TCGA-CN-A497-01 11 64880758 64880758 G T TM7SF2 Missense_Mutation p.G124V 0.30 tolerated(0.45) possibly_damaging(0.673) TCGA-CN-A497-01 11 6977139 6977139 G T ZNF215 Missense_Mutation p.D311Y 0.31 deleterious(0.02) possibly_damaging(0.459) TCGA-CN-A497-01 11 71293705 71293705 C T KRTAP5-11 Missense_Mutation p.C60Y 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-CN-A497-01 11 94924659 94924659 T G SESN3 Missense_Mutation p.Q84P 0.32 deleterious(0.02) benign(0.022) TCGA-CN-A497-01 12 102038465 102038465 G T MYBPC1 Missense_Mutation p.A261S 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-CN-A497-01 12 103352431 103352431 G T ASCL1 Missense_Mutation p.G137C 0.28 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 12 105280120 105280120 T A SLC41A2 Silent p.I326I 0.24 TCGA-CN-A497-01 12 10958928 10958928 A G TAS2R8 Missense_Mutation p.Y218H 0.08 tolerated(0.33) benign(0.004) TCGA-CN-A497-01 12 112481547 112481547 T A NAA25 Missense_Mutation p.N711I 0.25 deleterious(0) probably_damaging(0.987) TCGA-CN-A497-01 12 121454223 121454223 C G C12orf43 Missense_Mutation p.D19H 0.44 deleterious(0.01) possibly_damaging(0.773) TCGA-CN-A497-01 12 129294521 129294521 C A SLC15A4 Missense_Mutation p.L326F 0.15 tolerated(0.16) benign(0.071) TCGA-CN-A497-01 12 14975882 14975882 T A C12orf60 Missense_Mutation p.S5T 0.64 tolerated(0.42) benign(0.048) TCGA-CN-A497-01 12 15090986 15090986 T C ERP27 Missense_Mutation p.D32G 0.20 tolerated(0.15) benign(0.03) TCGA-CN-A497-01 12 19427863 19427863 T A PLEKHA5 Nonsense_Mutation p.L420* 0.10 TCGA-CN-A497-01 12 2113530 2113530 C A DCP1B Missense_Mutation p.R23L 0.73 deleterious(0.04) possibly_damaging(0.642) TCGA-CN-A497-01 12 21377744 21377744 A T SLCO1B1 Silent p.S612S 0.09 TCGA-CN-A497-01 12 21447035 21447035 T A SLCO1A2 Missense_Mutation p.Q427H 0.79 tolerated(0.23) benign(0.011) TCGA-CN-A497-01 12 26277471 26277471 A G BHLHE41 Missense_Mutation p.M36T 0.34 deleterious(0) benign(0.011) TCGA-CN-A497-01 12 55615466 55615466 C A OR10A7 Missense_Mutation p.R220S 0.37 tolerated(0.06) benign(0.193) TCGA-CN-A497-01 12 55863745 55863745 A G OR6C70 Missense_Mutation p.F60L 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-A497-01 12 56995031 56995031 G T BAZ2A Silent p.P1411P 0.22 TCGA-CN-A497-01 12 57865745 57865745 C A GLI1 Silent p.T1074T 0.21 TCGA-CN-A497-01 12 661643 661643 C T B4GALNT3 Nonsense_Mutation p.Q407* 0.68 TCGA-CN-A497-01 12 66773099 66773099 C A GRIP1 Missense_Mutation p.G809V 0.35 deleterious(0.04) benign(0.008) TCGA-CN-A497-01 12 71016240 71016240 T C PTPRB Missense_Mutation p.H213R 0.31 tolerated_low_confidence(0.32) benign(0.001) TCGA-CN-A497-01 12 7635998 7635998 C G CD163 Missense_Mutation p.C1018S 0.65 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 12 8291038 8291038 G T CLEC4A 3'UTR 0.18 TCGA-CN-A497-01 12 85449885 85449885 C T LRRIQ1 Silent p.L438L 0.31 TCGA-CN-A497-01 13 46730580 46730580 C A LCP1 Missense_Mutation p.V162F 0.39 deleterious(0.01) possibly_damaging(0.754) TCGA-CN-A497-01 13 53421458 53421458 C A PCDH8 Missense_Mutation p.A372S 0.31 tolerated_low_confidence(0.77) benign(0.018) TCGA-CN-A497-01 13 67802364 67802364 G T PCDH9 Missense_Mutation p.A70D 0.54 deleterious(0.02) possibly_damaging(0.777) TCGA-CN-A497-01 14 100331947 100331947 G T EML1 Missense_Mutation p.G116V 0.33 tolerated(0.22) probably_damaging(0.929) TCGA-CN-A497-01 14 100820220 100820220 G - WARS Intron 0.32 TCGA-CN-A497-01 14 20215980 20215980 C A OR4Q3 Missense_Mutation p.R132S 0.42 deleterious(0.02) benign(0.009) TCGA-CN-A497-01 14 21109542 21109542 G T OR6S1 Missense_Mutation p.F103L 0.20 tolerated(0.35) possibly_damaging(0.626) TCGA-CN-A497-01 14 21486369 21486369 C A NDRG2 Silent p.L297L 0.34 TCGA-CN-A497-01 14 22538980 22538980 G T TRAV22 Missense_Mutation p.G10W 0.27 tolerated(0.09) benign(0.067) TCGA-CN-A497-01 14 23869490 23869490 T C MYH6 Missense_Mutation p.Q519R 0.33 tolerated(0.07) possibly_damaging(0.868) TCGA-CN-A497-01 14 33293497 33293497 G A AKAP6 Missense_Mutation p.V2160I 0.21 tolerated_low_confidence(0.34) benign(0.016) TCGA-CN-A497-01 14 34419948 34419948 C T EGLN3 Missense_Mutation p.G4E 0.33 tolerated_low_confidence(0.66) benign(0.002) TCGA-CN-A497-01 14 60063311 60063311 C A RTN1 3'UTR 0.36 TCGA-CN-A497-01 14 65239950 65239950 A C SPTB Missense_Mutation p.F1722L 0.13 tolerated(0.29) benign(0.023) TCGA-CN-A497-01 14 67589039 67589039 G A GPHN Missense_Mutation p.A565T 0.19 tolerated(0.44) benign(0.083) TCGA-CN-A497-01 14 67859513 67859513 C A PLEK2 Nonsense_Mutation p.E179* 0.31 TCGA-CN-A497-01 14 70478250 70478250 G T SMOC1 Missense_Mutation p.E302D 0.15 tolerated(0.3) benign(0.003) TCGA-CN-A497-01 14 80669344 80669344 C A DIO2 Missense_Mutation p.W206C 0.38 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 14 86089034 86089034 C T FLRT2 Silent p.S392S 0.31 TCGA-CN-A497-01 14 92959974 92959974 G T SLC24A4 3'UTR 0.33 TCGA-CN-A497-01 14 94708277 94708277 T C PPP4R4 Missense_Mutation p.C377R 0.30 deleterious(0) probably_damaging(0.982) TCGA-CN-A497-01 15 22382568 22382568 A C OR4N4 Missense_Mutation p.L32F 0.21 tolerated(0.12) benign(0.007) TCGA-CN-A497-01 15 27725977 27725977 G T GABRG3 Intron 0.36 TCGA-CN-A497-01 15 35085545 35085545 C T ACTC1 Missense_Mutation p.E119K 0.42 deleterious_low_confidence(0.03) benign(0.163) TCGA-CN-A497-01 15 35834663 35834663 A G DPH6 Silent p.A23A 0.24 TCGA-CN-A497-01 15 41488237 41488237 T A EXD1 Splice_Site p.X121_splice 0.26 TCGA-CN-A497-01 15 45404788 45404788 A T DUOX2 Missense_Mutation p.S97T 0.35 deleterious(0) probably_damaging(0.998) TCGA-CN-A497-01 15 50544696 50544696 C A HDC Silent p.L324L 0.27 TCGA-CN-A497-01 15 55839092 55839092 G T PYGO1 Missense_Mutation p.P130Q 0.30 tolerated(0.06) benign(0.184) TCGA-CN-A497-01 15 58855824 58855824 G T LIPC Missense_Mutation p.W430C 0.33 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 15 67473711 67473711 C A SMAD3 Missense_Mutation p.S264Y 0.41 deleterious(0) probably_damaging(0.964) TCGA-CN-A497-01 15 67687863 67687863 G T IQCH Missense_Mutation p.V623F 0.40 deleterious(0.04) benign(0.048) TCGA-CN-A497-01 15 79750711 79750711 G T KIAA1024 Missense_Mutation p.R741L 0.35 tolerated(0.06) benign(0.198) TCGA-CN-A497-01 15 85478710 85478710 G C SLC28A1 Silent p.G514G 0.33 TCGA-CN-A497-01 16 11363039 11363039 G C TNP2 Silent p.T27T 0.46 TCGA-CN-A497-01 16 1396190 1396190 A G BAIAP3 Missense_Mutation p.N809S 0.51 tolerated(0.16) benign(0.297) TCGA-CN-A497-01 16 1633322 1633322 C T IFT140 Silent p.R475R 0.24 TCGA-CN-A497-01 16 23208746 23208746 C T SCNN1G Silent p.L359L 0.14 TCGA-CN-A497-01 16 24043458 24043464 ACCCCCG CCCCCC PRKCB Frame_Shift_Del p.D97Afs*34 0.37 TCGA-CN-A497-01 16 27375193 27375193 G C IL4R 3'UTR 0.45 TCGA-CN-A497-01 16 27445713 27445713 C A IL21R Missense_Mutation p.T32K 0.55 deleterious(0) probably_damaging(0.925) TCGA-CN-A497-01 16 28847078 28847079 - G ATXN2L Frame_Shift_Ins 0.12 TCGA-CN-A497-01 16 29997052 29997052 A G TAOK2 Missense_Mutation p.Q621R 0.21 deleterious(0.02) benign(0.129) TCGA-CN-A497-01 16 364684 364684 C T AXIN1 Splice_Site p.X293_splice 0.62 TCGA-CN-A497-01 16 49671513 49671513 A G ZNF423 Missense_Mutation p.F517S 0.58 deleterious(0) probably_damaging(0.93) TCGA-CN-A497-01 16 51175392 51175392 G A SALL1 Silent p.I247I 0.31 TCGA-CN-A497-01 16 54965318 54965318 G C IRX5 Missense_Mutation p.D70H 0.36 deleterious(0) probably_damaging(0.956) TCGA-CN-A497-01 16 67683164 67683164 C T RLTPR Silent p.L566L 0.50 TCGA-CN-A497-01 16 74524900 74524900 G T GLG1 Missense_Mutation p.A483E 0.45 tolerated(0.2) benign(0.413) TCGA-CN-A497-01 16 848729 848729 G A GNG13 Missense_Mutation p.T65I 0.21 tolerated(0.41) benign(0.01) TCGA-CN-A497-01 17 10432781 10432781 C A MYH2 Missense_Mutation p.E1045D 0.32 deleterious(0.01) benign(0.242) TCGA-CN-A497-01 17 18022216 18022216 G T MYO15A Silent p.S34S 0.38 TCGA-CN-A497-01 17 27027531 27027531 G T SUPT6H Splice_Site p.X1602_splice 0.40 TCGA-CN-A497-01 17 28380797 28380797 C T EFCAB5 Missense_Mutation p.R609C 0.32 deleterious(0.03) possibly_damaging(0.707) TCGA-CN-A497-01 17 28849322 28849322 C T GOSR1 Missense_Mutation p.R227W 0.32 deleterious(0) probably_damaging(0.997) TCGA-CN-A497-01 17 3337109 3337109 G C OR1E2 Missense_Mutation p.I9M 0.26 tolerated(0.1) benign(0.234) TCGA-CN-A497-01 17 33521324 33521324 C A SLC35G3 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0.02) probably_damaging(0.914) TCGA-CN-A497-01 17 39503099 39503099 G T KRT33A Missense_Mutation p.N291K 0.30 tolerated(0.1) benign(0.049) TCGA-CN-A497-01 17 41597587 41597587 A T DHX8 Silent p.T963T 0.31 TCGA-CN-A497-01 17 50235266 50235266 C A CA10 5'UTR 0.26 TCGA-CN-A497-01 17 5085108 5085108 G A ZNF594 3'UTR 0.25 TCGA-CN-A497-01 17 56382419 56382419 G T BZRAP1 Intron 0.21 TCGA-CN-A497-01 17 63898298 63898298 A G CEP112 Missense_Mutation p.I712T 0.26 tolerated(1) benign(0.01) TCGA-CN-A497-01 17 64092398 64092398 G C CEP112 Missense_Mutation p.H247D 0.30 deleterious(0.03) benign(0.019) TCGA-CN-A497-01 17 72368531 72368531 T A GPR142 Missense_Mutation p.L394Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-CN-A497-01 17 7329309 7329309 C A C17orf74 Intron 0.32 TCGA-CN-A497-01 17 7577090 7577090 C G TP53 Missense_Mutation p.R283P 0.36 deleterious(0.01) probably_damaging(0.978) TCGA-CN-A497-01 17 7577142 7577142 C A TP53 Nonsense_Mutation p.G266* 0.30 TCGA-CN-A497-01 17 76354479 76354479 C A SOCS3 3'UTR 0.32 TCGA-CN-A497-01 17 76968228 76968228 G C LGALS3BP Silent p.G396G 0.35 TCGA-CN-A497-01 17 9066205 9066205 G T NTN1 Missense_Mutation p.G365V 0.29 deleterious(0) probably_damaging(0.926) TCGA-CN-A497-01 18 14478401 14478401 C A CXADRP3 RNA 0.26 TCGA-CN-A497-01 18 3173972 3173972 G T MYOM1 Missense_Mutation p.R380S 0.11 tolerated(0.4) benign(0.012) TCGA-CN-A497-01 18 55020120 55020120 C T ST8SIA3 Silent p.L15L 0.51 TCGA-CN-A497-01 18 57103054 57103054 C A CCBE1 3'UTR 0.41 TCGA-CN-A497-01 18 63491877 63491877 C A CDH7 Intron 0.39 TCGA-CN-A497-01 18 6956694 6956694 G T LAMA1 Missense_Mutation p.P2679T 0.85 deleterious(0.03) benign(0.058) TCGA-CN-A497-01 18 9887610 9887610 A G TXNDC2 Silent p.P378P 0.87 TCGA-CN-A497-01 19 10463625 10463625 C G TYK2 Missense_Mutation p.E1059D 0.39 tolerated(0.42) benign(0.038) TCGA-CN-A497-01 19 10823233 10823233 G A QTRT1 Missense_Mutation p.A264T 0.40 tolerated(0.09) probably_damaging(0.956) TCGA-CN-A497-01 19 15483734 15483734 C G AKAP8 Silent p.G263G 0.35 TCGA-CN-A497-01 19 19368833 19368833 G C HAPLN4 Missense_Mutation p.N334K 0.31 tolerated(0.69) benign(0.077) TCGA-CN-A497-01 19 22156488 22156488 C A ZNF208 Nonsense_Mutation p.E450* 0.35 TCGA-CN-A497-01 19 22363620 22363620 T A ZNF676 Missense_Mutation p.K300M 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-CN-A497-01 19 2991911 2991911 C T TLE6 Missense_Mutation p.P439S 0.31 deleterious(0) benign(0.005) TCGA-CN-A497-01 19 31767880 31767880 C A TSHZ3 Missense_Mutation p.G940V 0.33 deleterious(0) probably_damaging(0.989) TCGA-CN-A497-01 19 35719114 35719114 G T FAM187B Missense_Mutation p.P157Q 0.33 deleterious(0.01) possibly_damaging(0.892) TCGA-CN-A497-01 19 42489283 42489283 G T ATP1A3 Silent p.I273I 0.23 TCGA-CN-A497-01 19 44792899 44792899 T A ZNF235 Missense_Mutation p.H230L 0.29 tolerated(0.06) benign(0.005) TCGA-CN-A497-01 19 44982102 44982102 C A ZNF180 Missense_Mutation p.S199I 0.21 tolerated(0.38) benign(0.066) TCGA-CN-A497-01 19 45579617 45579617 C T ZNF296 Silent p.K5K 0.44 TCGA-CN-A497-01 19 46971704 46971704 A G PNMAL1 3'UTR 0.40 TCGA-CN-A497-01 19 51506313 51506313 C T KLK9 3'UTR 0.26 TCGA-CN-A497-01 19 54823884 54823884 C T LILRA5 Nonsense_Mutation p.W4* 0.35 TCGA-CN-A497-01 19 55831443 55831443 C A TMEM150B Silent p.L96L 0.36 TCGA-CN-A497-01 19 56539100 56539100 C T NLRP5 Silent p.L501L 0.44 TCGA-CN-A497-01 19 56973706 56973706 C G ZNF667 Splice_Site p.X11_splice 0.22 TCGA-CN-A497-01 19 57910124 57910124 G T ZNF548 Nonsense_Mutation p.E169* 0.64 TCGA-CN-A497-01 19 58596713 58596713 G T ZSCAN18 Missense_Mutation p.A347D 0.26 tolerated(0.18) benign(0.031) TCGA-CN-A497-01 19 6478988 6478988 G T DENND1C Missense_Mutation p.R86S 0.20 deleterious(0) probably_damaging(0.953) TCGA-CN-A497-01 19 8657003 8657003 C A ADAMTS10 Intron 0.24 TCGA-CN-A497-01 19 9058463 9058463 G - MUC16 Frame_Shift_Del p.I9662Sfs*22 0.24 TCGA-CN-A497-01 19 9062836 9062836 T C MUC16 Missense_Mutation p.T8204A 0.38 unknown(0) TCGA-CN-A497-01 1 101704868 101704868 T C S1PR1 Missense_Mutation p.Y110H 0.31 deleterious(0) possibly_damaging(0.793) TCGA-CN-A497-01 1 102270115 102270115 G T OLFM3 Missense_Mutation p.S352R 0.33 deleterious(0) probably_damaging(0.996) TCGA-CN-A497-01 1 103444945 103444945 C G COL11A1 Missense_Mutation p.G868A 0.36 unknown(0) TCGA-CN-A497-01 1 103480122 103480122 C G COL11A1 Missense_Mutation p.G506A 0.35 probably_damaging(0.999) TCGA-CN-A497-01 1 103487291 103487291 T G COL11A1 Missense_Mutation p.Q427P 0.32 probably_damaging(0.998) TCGA-CN-A497-01 1 107867514 107867514 A G NTNG1 Missense_Mutation p.Y286C 0.30 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 1 110765816 110765816 C T KCNC4 Silent p.C303C 0.37 TCGA-CN-A497-01 1 144892344 144892344 G T PDE4DIP Intron 0.17 TCGA-CN-A497-01 1 152659361 152659361 C T LCE2B Silent p.P14P 0.24 TCGA-CN-A497-01 1 156124325 156124325 G T SEMA4A Intron 0.40 TCGA-CN-A497-01 1 156222723 156222723 G A SMG5 Silent p.I883I 0.50 TCGA-CN-A497-01 1 157516733 157516733 C A FCRL5 Missense_Mutation p.A103S 0.26 deleterious(0.03) possibly_damaging(0.842) TCGA-CN-A497-01 1 158687612 158687612 G T OR6K3 Silent p.I98I 0.36 TCGA-CN-A497-01 1 160389021 160389021 G C VANGL2 Missense_Mutation p.C141S 0.27 deleterious(0) probably_damaging(0.998) TCGA-CN-A497-01 1 167032958 167032958 T C GPA33 Silent p.P144P 0.28 TCGA-CN-A497-01 1 167032959 167032959 G T GPA33 Missense_Mutation p.P144Q 0.30 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 1 169390784 169390784 T G CCDC181 Silent p.P295P 0.35 TCGA-CN-A497-01 1 169510536 169510536 C T F5 Silent p.Q1264Q 0.36 TCGA-CN-A497-01 1 169572298 169572298 C A SELP Silent p.S557S 0.25 TCGA-CN-A497-01 1 171249998 171249998 T G FMO1 Missense_Mutation p.V234G 0.32 deleterious(0) possibly_damaging(0.782) TCGA-CN-A497-01 1 173878796 173878796 C A SERPINC1 Silent p.V349V 0.39 TCGA-CN-A497-01 1 175092695 175092695 G C TNN Missense_Mutation p.S937T 0.29 tolerated(0.18) benign(0.052) TCGA-CN-A497-01 1 17570512 17570512 T C PADI1 Missense_Mutation p.M589T 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-CN-A497-01 1 179820247 179820247 C T TOR1AIP2 Missense_Mutation p.D96N 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.506) TCGA-CN-A497-01 1 186948481 186948481 C T PLA2G4A Silent p.I665I 0.25 TCGA-CN-A497-01 1 19526188 19526188 A C UBR4 Missense_Mutation p.L112R 0.37 probably_damaging(0.997) TCGA-CN-A497-01 1 197404094 197404094 G - CRB1 Frame_Shift_Del p.W1034Cfs*4 0.34 TCGA-CN-A497-01 1 200539118 200539118 C T KIF14 Missense_Mutation p.M1194I 0.22 deleterious(0.03) possibly_damaging(0.546) TCGA-CN-A497-01 1 208212312 208212312 G C PLXNA2 Missense_Mutation p.N1506K 0.32 tolerated(0.3) probably_damaging(0.967) TCGA-CN-A497-01 1 208224641 208224641 G A PLXNA2 Missense_Mutation p.P1041S 0.30 deleterious(0) probably_damaging(0.995) TCGA-CN-A497-01 1 213134688 213134688 C T VASH2 Intron 0.36 TCGA-CN-A497-01 1 215848509 215848509 A G USH2A Silent p.H4248H 0.44 TCGA-CN-A497-01 1 216172258 216172258 G T USH2A Missense_Mutation p.P2210T 0.39 probably_damaging(0.986) TCGA-CN-A497-01 1 218458655 218458655 A T RRP15 5'UTR 0.36 TCGA-CN-A497-01 1 230883368 230883368 G A CAPN9 Silent p.L42L 0.24 TCGA-CN-A497-01 1 233515058 233515058 A G MLK4 Missense_Mutation p.K769R 0.23 tolerated(1) benign(0.006) TCGA-CN-A497-01 1 234041452 234041452 C A SLC35F3 Silent p.I77I 0.35 TCGA-CN-A497-01 1 237604783 237604783 G C RYR2 Missense_Mutation p.K390N 0.24 probably_damaging(0.966) TCGA-CN-A497-01 1 241797420 241797420 C T CHML Nonsense_Mutation p.W550* 0.30 TCGA-CN-A497-01 1 2428299 2428299 G T PLCH2 Nonsense_Mutation p.E629* 0.29 TCGA-CN-A497-01 1 248224437 248224437 T A OR2L3 Missense_Mutation p.S152T 0.32 tolerated(0.16) benign(0.057) TCGA-CN-A497-01 1 248525459 248525459 C A OR2T4 Missense_Mutation p.P193T 0.34 deleterious(0.04) benign(0.088) TCGA-CN-A497-01 1 26361917 26361917 C A EXTL1 3'UTR 0.25 TCGA-CN-A497-01 1 26372422 26372422 C T SLC30A2 5'UTR 0.22 TCGA-CN-A497-01 1 3421856 3421856 G A MEGF6 Missense_Mutation p.P702S 0.26 tolerated(0.18) benign(0.059) TCGA-CN-A497-01 1 34383835 34383835 C A CSMD2 Silent p.S220S 0.20 TCGA-CN-A497-01 1 40981148 40981148 A T EXO5 Missense_Mutation p.K311I 0.42 deleterious(0) benign(0.005) TCGA-CN-A497-01 1 44433317 44433317 G C IPO13 Missense_Mutation p.R952P 0.15 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 1 53237308 53237308 G T ZYG11B Silent p.L271L 0.28 TCGA-CN-A497-01 1 55474122 55474122 G A BSND Missense_Mutation p.A262T 0.29 tolerated(0.09) benign(0.406) TCGA-CN-A497-01 1 60456222 60456222 A T C1orf87 3'UTR 0.28 TCGA-CN-A497-01 1 75602803 75602803 G A LHX8 Missense_Mutation p.G42R 0.34 tolerated_low_confidence(0.11) benign(0.036) TCGA-CN-A497-01 1 79119927 79119927 G C IFI44 Splice_Site p.X153_splice 0.41 TCGA-CN-A497-01 1 82433865 82433865 G T LPHN2 Missense_Mutation p.M818I 0.33 deleterious(0) probably_damaging(0.986) TCGA-CN-A497-01 1 887493 887493 C G NOC2L Missense_Mutation p.W406C 0.40 deleterious(0) probably_damaging(0.996) TCGA-CN-A497-01 1 9101785 9101785 G T SLC2A5 Intron 0.33 TCGA-CN-A497-01 20 21687211 21687211 G T PAX1 Missense_Mutation p.R141L 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A497-01 20 23065896 23065896 G T CD93 Missense_Mutation p.R312S 0.28 tolerated(0.49) benign(0.194) TCGA-CN-A497-01 20 2377207 2377207 C A TGM6 Missense_Mutation p.D160E 0.23 tolerated(0.23) benign(0.225) TCGA-CN-A497-01 20 31657705 31657705 G T BPIFB3 Silent p.V387V 0.26 TCGA-CN-A497-01 20 35444529 35444529 G A SOGA1 Missense_Mutation p.P439L 0.37 deleterious(0) probably_damaging(0.993) TCGA-CN-A497-01 20 43030034 43030034 G A HNF4A Missense_Mutation p.V8I 0.43 tolerated_low_confidence(0.18) benign(0.001) TCGA-CN-A497-01 20 44453474 44453474 C A TNNC2 Splice_Site p.X2_splice 0.33 TCGA-CN-A497-01 20 47273679 47273679 G C PREX1 Missense_Mutation p.D674E 0.27 deleterious(0) benign(0.382) TCGA-CN-A497-01 20 53266975 53266975 T C DOK5 Missense_Mutation p.L293P 0.32 tolerated_low_confidence(0.14) benign(0.013) TCGA-CN-A497-01 20 56094387 56094387 A G CTCFL Silent p.S267S 0.28 TCGA-CN-A497-01 20 56099177 56099177 C - CTCFL Frame_Shift_Del p.E29Rfs*52 0.26 TCGA-CN-A497-01 21 10906977 10906977 T A TPTE Silent p.P528P 0.13 TCGA-CN-A497-01 21 11098892 11098892 G T BAGE2 RNA 0.20 TCGA-CN-A497-01 21 31768565 31768565 G T KRTAP13-1 Missense_Mutation p.R54M 0.38 deleterious(0.01) possibly_damaging(0.778) TCGA-CN-A497-01 21 31914164 31914164 C A KRTAP19-6 5'UTR 0.36 TCGA-CN-A497-01 21 33044291 33044291 C T SCAF4 Silent p.A955A 0.34 TCGA-CN-A497-01 21 34066606 34066606 C T SYNJ1 Missense_Mutation p.D280N 0.23 tolerated(0.19) possibly_damaging(0.668) TCGA-CN-A497-01 21 40558961 40558961 A G BRWD1 Silent p.N2318N 0.28 TCGA-CN-A497-01 21 47681227 47681228 - TTCG MCM3AP Frame_Shift_Ins p.R1145Tfs*10 0.35 TCGA-CN-A497-01 22 26083503 26083503 G - ADRBK2 Splice_Site p.X277_splice 0.23 TCGA-CN-A497-01 2 108910170 108910170 T A SULT1C2 Missense_Mutation p.V16E 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-CN-A497-01 2 131976077 131976077 C T POTEE Silent p.C34C 0.31 TCGA-CN-A497-01 2 132021201 132021201 G A POTEE Missense_Mutation p.D725N 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.908) TCGA-CN-A497-01 2 138739075 138739075 G A HNMT Intron 0.40 TCGA-CN-A497-01 2 141777553 141777553 C G LRP1B Silent p.R636R 0.35 TCGA-CN-A497-01 2 143742671 143742671 G T KYNU Missense_Mutation p.D250Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-CN-A497-01 2 155555257 155555257 C G KCNJ3 5'UTR 0.39 TCGA-CN-A497-01 2 168106475 168106475 T A XIRP2 Missense_Mutation p.I2858N 0.32 possibly_damaging(0.499) TCGA-CN-A497-01 2 172187160 172187160 C T METTL8 Missense_Mutation p.V257I 0.20 tolerated(0.32) benign(0.248) TCGA-CN-A497-01 2 179393257 179393257 G T TTN Missense_Mutation p.P35741T 0.50 TCGA-CN-A497-01 2 179576741 179576741 A C TTN Missense_Mutation p.S9272R 0.17 TCGA-CN-A497-01 2 180307911 180307911 G T ZNF385B 3'UTR 0.25 TCGA-CN-A497-01 2 182344897 182344897 T C ITGA4 Missense_Mutation p.Y220H 0.18 deleterious(0) probably_damaging(0.969) TCGA-CN-A497-01 2 202900192 202900192 C G FZD7 Silent p.T274T 0.20 TCGA-CN-A497-01 2 208795678 208795678 C A PLEKHM3 Missense_Mutation p.A620S 0.20 tolerated(0.54) benign(0.116) TCGA-CN-A497-01 2 215646211 215646211 C - BARD1 Frame_Shift_Del p.S131Vfs*28 0.33 TCGA-CN-A497-01 2 215919377 215919377 C T ABCA12 Missense_Mutation p.R110K 0.27 tolerated(0.25) benign(0) TCGA-CN-A497-01 2 220333617 220333617 G T SPEG Missense_Mutation p.R1113L 0.28 benign(0.013) TCGA-CN-A497-01 2 220333618 220333618 G T SPEG Silent p.R1113R 0.28 TCGA-CN-A497-01 2 225342967 225342967 G A CUL3 Missense_Mutation p.R709W 0.52 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 2 226273674 226273674 G - NYAP2 Frame_Shift_Del p.M28* 0.24 TCGA-CN-A497-01 2 228678597 228678597 C T CCL20 5'UTR 0.43 TCGA-CN-A497-01 2 230456321 230456321 A T DNER Missense_Mutation p.V187E 0.39 deleterious(0) possibly_damaging(0.556) TCGA-CN-A497-01 2 230656690 230656690 T A TRIP12 Missense_Mutation p.Q1361L 0.34 deleterious(0) probably_damaging(0.953) TCGA-CN-A497-01 2 230914587 230914587 C T SLC16A14 Missense_Mutation p.G98E 0.31 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 2 24181170 24181170 G T UBXN2A Splice_Site 0.22 TCGA-CN-A497-01 2 29006792 29006792 A G PPP1CB Silent p.Q180Q 0.37 TCGA-CN-A497-01 2 40366589 40366589 C A SLC8A1 Missense_Mutation p.D833Y 0.24 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 2 49381409 49381409 C G FSHR Missense_Mutation p.E50Q 0.29 tolerated(0.55) benign(0.167) TCGA-CN-A497-01 2 75879711 75879711 G C MRPL19 Missense_Mutation p.G135R 0.29 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 2 95537376 95537376 G A TEKT4 Missense_Mutation p.A18T 0.28 deleterious(0.05) benign(0.175) TCGA-CN-A497-01 2 98274980 98274980 G A ACTR1B Silent p.D189D 0.32 TCGA-CN-A497-01 2 99448810 99448810 C A KIAA1211L Splice_Site p.X180_splice 0.29 TCGA-CN-A497-01 3 109049600 109049600 C T DPPA4 Silent p.K150K 0.15 TCGA-CN-A497-01 3 111846896 111846896 G T GCSAM Missense_Mutation p.H39Q 0.29 tolerated(0.44) possibly_damaging(0.461) TCGA-CN-A497-01 3 112996988 112996988 C T BOC Missense_Mutation p.A529V 0.26 deleterious(0) probably_damaging(0.985) TCGA-CN-A497-01 3 123166426 123166426 G A ADCY5 Missense_Mutation p.R323C 0.19 deleterious(0.01) possibly_damaging(0.899) TCGA-CN-A497-01 3 123512690 123512690 G T MYLK Intron 0.29 TCGA-CN-A497-01 3 126219696 126219696 C T UROC1 Silent p.L389L 0.37 TCGA-CN-A497-01 3 126708551 126708551 G C PLXNA1 Missense_Mutation p.R372P 0.20 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 3 129370518 129370518 T C TMCC1 Missense_Mutation p.I590V 0.26 deleterious(0) possibly_damaging(0.869) TCGA-CN-A497-01 3 140178487 140178487 C A CLSTN2 Silent p.V366V 0.12 TCGA-CN-A497-01 3 145912998 145912998 C A PLSCR4 Missense_Mutation p.M286I 0.28 tolerated(0.13) benign(0.232) TCGA-CN-A497-01 3 161146942 161146942 A T RP11-3P17.5 RNA 0.56 TCGA-CN-A497-01 3 164907558 164907558 C - SLITRK3 Frame_Shift_Del p.G354Vfs*35 0.18 TCGA-CN-A497-01 3 167183177 167183177 G C SERPINI2 Missense_Mutation p.S228C 0.33 deleterious(0) probably_damaging(0.983) TCGA-CN-A497-01 3 170727800 170727800 C - SLC2A2 Frame_Shift_Del p.G148Dfs*7 0.32 TCGA-CN-A497-01 3 172642049 172642049 C T SPATA16 Missense_Mutation p.M429I 0.11 tolerated(0.64) benign(0.043) TCGA-CN-A497-01 3 172766826 172766826 G A SPATA16 Missense_Mutation p.A224V 0.31 deleterious(0.02) possibly_damaging(0.682) TCGA-CN-A497-01 3 175520961 175520961 G A NAALADL2 Silent p.V786V 0.20 TCGA-CN-A497-01 3 193171956 193171956 C A ATP13A4 Missense_Mutation p.G654V 0.61 deleterious(0) probably_damaging(0.999) TCGA-CN-A497-01 3 193185178 193185178 G T ATP13A4 Silent p.L347L 0.39 TCGA-CN-A497-01 3 195516522 195516522 C A MUC4 Silent p.P643P 0.19 TCGA-CN-A497-01 3 19575568 19575568 G T KCNH8 Missense_Mutation p.D1101Y 0.47 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-CN-A497-01 3 196746604 196746604 C T MFI2 Intron 0.19 TCGA-CN-A497-01 3 24193920 24193920 G T THRB Silent p.T115T 0.60 TCGA-CN-A497-01 3 26751267 26751267 C A LRRC3B Missense_Mutation p.P35H 0.39 deleterious(0) probably_damaging(0.993) TCGA-CN-A497-01 3 26751268 26751268 C A LRRC3B Silent p.P35P 0.42 TCGA-CN-A497-01 3 2942464 2942464 A C CNTN4 Missense_Mutation p.T346P 0.52 deleterious(0.02) benign(0.371) TCGA-CN-A497-01 3 45077479 45077479 G T CLEC3B 3'UTR 0.50 TCGA-CN-A497-01 3 47451444 47451444 G T PTPN23 Missense_Mutation p.R719L 0.36 unknown(0) TCGA-CN-A497-01 3 65422830 65422830 C A MAGI1 Missense_Mutation p.G455C 0.45 deleterious(0) probably_damaging(0.997) TCGA-CN-A497-01 3 73433317 73433317 G T PDZRN3 Silent p.A800A 0.48 TCGA-CN-A497-01 3 74350822 74350822 C A CNTN3 Missense_Mutation p.V641L 0.32 tolerated(0.54) benign(0.182) TCGA-CN-A497-01 3 96945243 96945243 C G EPHA6 Missense_Mutation p.P417R 0.21 deleterious(0.01) possibly_damaging(0.779) TCGA-CN-A497-01 3 98251319 98251319 G T GPR15 Missense_Mutation p.D148Y 0.18 tolerated(0.15) possibly_damaging(0.548) TCGA-CN-A497-01 4 107157660 107157660 G A TBCK Missense_Mutation p.H413Y 0.60 tolerated(1) benign(0.007) TCGA-CN-A497-01 4 119026256 119026256 T C NDST3 Silent p.H355H 0.49 TCGA-CN-A497-01 4 119154206 119154206 C - NDST3 Frame_Shift_Del p.I621Sfs*97 0.19 TCGA-CN-A497-01 4 141543409 141543409 C A TBC1D9 Silent p.R1247R 0.48 TCGA-CN-A497-01 4 30732495 30732495 G T PCDH7 Intron 0.67 TCGA-CN-A497-01 4 38776141 38776141 A G TLR10 Silent p.N357N 0.58 TCGA-CN-A497-01 4 48584666 48584666 C A FRYL Nonsense_Mutation p.E612* 0.38 TCGA-CN-A497-01 4 55561859 55561859 C G KIT Missense_Mutation p.I83M 0.52 tolerated(0.19) benign(0.173) TCGA-CN-A497-01 4 66535349 66535349 C A EPHA5 Missense_Mutation p.A38S 0.33 tolerated(0.29) benign(0.003) TCGA-CN-A497-01 4 76489591 76489591 C A C4orf26 Missense_Mutation p.L127I 0.50 tolerated_low_confidence(0.27) possibly_damaging(0.567) TCGA-CN-A497-01 4 79366990 79366990 G A FRAS1 Intron 0.56 TCGA-CN-A497-01 5 113829140 113829140 C A KCNN2 Missense_Mutation p.Q475K 0.19 deleterious(0.01) possibly_damaging(0.893) TCGA-CN-A497-01 5 121759078 121759078 C T SNCAIP Missense_Mutation p.P216S 0.21 tolerated(1) probably_damaging(0.999) TCGA-CN-A497-01 5 122337708 122337708 A T SNX24 Intron 0.28 TCGA-CN-A497-01 5 127488461 127488461 G T SLC12A2 Missense_Mutation p.R776L 0.39 tolerated(0.21) possibly_damaging(0.73) TCGA-CN-A497-01 5 140182275 140182275 G T PCDHA3 Missense_Mutation p.R498L 0.39 tolerated_low_confidence(0.08) possibly_damaging(0.83) TCGA-CN-A497-01 5 140229239 140229239 T C PCDHA9 Missense_Mutation p.C387R 0.36 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CN-A497-01 5 140237560 140237560 C T PCDHA10 Missense_Mutation p.R643C 0.27 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-CN-A497-01 5 140530079 140530079 C A PCDHB6 Missense_Mutation p.H81N 0.40 deleterious(0) benign(0.021) TCGA-CN-A497-01 5 140725274 140725274 C T PCDHGA3 Silent p.N558N 0.25 TCGA-CN-A497-01 5 140730750 140730750 C A PCDHGB1 Missense_Mutation p.T308K 0.25 tolerated(0.43) benign(0.02) TCGA-CN-A497-01 5 140754224 140754224 C A PCDHGA6 Missense_Mutation p.P192T 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.903) TCGA-CN-A497-01 5 145719877 145719877 A G POU4F3 Missense_Mutation p.Q296R 0.25 deleterious(0.04) probably_damaging(0.976) TCGA-CN-A497-01 5 156590334 156590334 C A FAM71B Silent p.A314A 0.23 TCGA-CN-A497-01 5 169135205 169135205 C A DOCK2 Silent p.P472P 0.35 TCGA-CN-A497-01 5 176665487 176665487 G T NSD1 Nonsense_Mutation p.E1391* 0.30 TCGA-CN-A497-01 5 176710873 176710873 G A NSD1 Nonsense_Mutation p.W2032* 0.38 TCGA-CN-A497-01 5 19473364 19473364 C A CDH18 Nonsense_Mutation p.G782* 0.22 TCGA-CN-A497-01 5 19483503 19483503 C A CDH18 Missense_Mutation p.V597L 0.19 tolerated(0.45) benign(0.002) TCGA-CN-A497-01 5 21751730 21751730 T A CDH12 3'UTR 0.21 TCGA-CN-A497-01 5 24487835 24487835 C A CDH10 Missense_Mutation p.W768C 0.33 deleterious(0) probably_damaging(0.994) TCGA-CN-A497-01 5 24492992 24492992 C A CDH10 Missense_Mutation p.G520C 0.24 deleterious(0.04) probably_damaging(0.984) TCGA-CN-A497-01 5 33989184 33989184 C A AMACR Intron 0.27 TCGA-CN-A497-01 5 34033498 34033498 C A C1QTNF3 Missense_Mutation p.D161Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-CN-A497-01 5 61846284 61846284 G C IPO11 Missense_Mutation p.G821R 0.36 deleterious(0.02) probably_damaging(0.931) TCGA-CN-A497-01 5 6742601 6742601 A T PAPD7 Splice_Site p.X87_splice 0.24 TCGA-CN-A497-01 5 78379197 78379197 G C BHMT2 Missense_Mutation p.G261R 0.30 tolerated(0.05) possibly_damaging(0.708) TCGA-CN-A497-01 5 90106414 90106414 C G GPR98 Missense_Mutation p.L5113V 0.23 possibly_damaging(0.636) TCGA-CN-A497-01 6 100838643 100838643 T C SIM1 Missense_Mutation p.H632R 0.33 tolerated_low_confidence(0.37) benign(0.007) TCGA-CN-A497-01 6 116263644 116263644 C A FRK Missense_Mutation p.R484L 0.27 deleterious(0.03) benign(0) TCGA-CN-A497-01 6 127771048 127771048 T C SOGA3 Splice_Site 0.37 TCGA-CN-A497-01 6 127911383 127911383 G T C6orf58 Missense_Mutation p.V276L 0.32 tolerated(0.3) benign(0.117) TCGA-CN-A497-01 6 129835634 129835634 C A LAMA2 Missense_Mutation p.H3035Q 0.33 deleterious(0) possibly_damaging(0.799) TCGA-CN-A497-01 6 136599468 136599468 T A BCLAF1 Missense_Mutation p.Q184L 0.24 deleterious_low_confidence(0.01) benign(0.145) TCGA-CN-A497-01 6 152545658 152545658 C T SYNE1 Missense_Mutation p.A7165T 0.31 possibly_damaging(0.809) TCGA-CN-A497-01 6 152552560 152552560 C A SYNE1 Missense_Mutation p.S7002I 0.33 benign(0.212) TCGA-CN-A497-01 6 152679534 152679534 G T SYNE1 Missense_Mutation p.H3528N 0.25 benign(0.298) TCGA-CN-A497-01 6 152763221 152763221 G T SYNE1 Missense_Mutation p.R1333S 0.27 benign(0.173) TCGA-CN-A497-01 6 154439921 154439921 G C OPRM1 3'Flank 0.36 TCGA-CN-A497-01 6 159653190 159653190 G T FNDC1 Missense_Mutation p.R549L 0.33 tolerated_low_confidence(0.3) unknown(0) TCGA-CN-A497-01 6 160908397 160908397 G A LPAL2 RNA 0.21 TCGA-CN-A497-01 6 168467434 168467434 C G FRMD1 Splice_Site p.X154_splice 0.19 TCGA-CN-A497-01 6 26189018 26189018 C A HIST1H4D Missense_Mutation p.R96L 0.14 deleterious(0) possibly_damaging(0.73) TCGA-CN-A497-01 6 28251692 28251692 G C PGBD1 Missense_Mutation p.E34D 0.21 tolerated_low_confidence(0.08) benign(0.004) TCGA-CN-A497-01 6 32036354 32036354 C A TNXB Missense_Mutation p.E2011D 0.22 benign(0.297) TCGA-CN-A497-01 6 3850626 3850626 G T FAM50B Missense_Mutation p.G194V 0.28 deleterious(0) probably_damaging(0.998) TCGA-CN-A497-01 6 45870951 45870951 C T CLIC5 Silent p.E369E 0.32 TCGA-CN-A497-01 6 46680027 46680027 A G PLA2G7 Missense_Mutation p.I173T 0.24 deleterious(0) probably_damaging(0.981) TCGA-CN-A497-01 6 46847685 46847685 C T GPR116 Silent p.V302V 0.54 TCGA-CN-A497-01 6 46977481 46977481 T A GPR110 Missense_Mutation p.T564S 0.26 tolerated(0.21) benign(0.284) TCGA-CN-A497-01 6 50810895 50810895 C G TFAP2B Missense_Mutation p.I391M 0.38 deleterious(0.05) benign(0.42) TCGA-CN-A497-01 6 69943213 69943213 G C BAI3 Missense_Mutation p.G838R 0.30 deleterious(0.01) probably_damaging(1) TCGA-CN-A497-01 6 72011258 72011258 A G OGFRL1 Missense_Mutation p.R288G 0.38 deleterious(0) probably_damaging(0.995) TCGA-CN-A497-01 6 74229614 74229614 C T EEF1A1 Missense_Mutation p.A46T 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.662) TCGA-CN-A497-01 6 7581190 7581190 C T DSP Silent p.C1589C 0.33 TCGA-CN-A497-01 6 78172340 78172340 G T HTR1B Missense_Mutation p.P261T 0.31 tolerated(0.23) benign(0.101) TCGA-CN-A497-01 6 80197310 80197310 G - LCA5 Frame_Shift_Del p.P502Qfs*91 0.19 TCGA-CN-A497-01 6 86257088 86257088 G C SNX14 Missense_Mutation p.P314A 0.27 tolerated(0.19) benign(0.001) TCGA-CN-A497-01 6 87964708 87964708 G T ZNF292 Missense_Mutation p.R454L 0.39 deleterious(0) probably_damaging(0.993) TCGA-CN-A497-01 7 100839133 100839133 C A MOGAT3 3'UTR 0.33 TCGA-CN-A497-01 7 105183003 105183003 G T RINT1 Missense_Mutation p.W141L 0.32 tolerated(0.37) benign(0.003) TCGA-CN-A497-01 7 11418802 11418802 C A THSD7A Missense_Mutation p.D1566Y 0.33 deleterious(0.03) possibly_damaging(0.691) TCGA-CN-A497-01 7 124404222 124404222 A G GPR37 Missense_Mutation p.V270A 0.27 deleterious(0.03) benign(0.414) TCGA-CN-A497-01 7 134878065 134878065 G A WDR91 Missense_Mutation p.S526L 0.26 tolerated(0.05) benign(0.002) TCGA-CN-A497-01 7 138406769 138406769 A T ATP6V0A4 Missense_Mutation p.L671Q 0.27 tolerated(0.31) benign(0.328) TCGA-CN-A497-01 7 147844614 147844614 G T CNTNAP2 Silent p.V862V 0.40 TCGA-CN-A497-01 7 151664376 151664376 A G GALNTL5 Silent p.T15T 0.20 TCGA-CN-A497-01 7 18633556 18633556 C T HDAC9 Nonsense_Mutation p.Q190* 0.28 TCGA-CN-A497-01 7 23757101 23757101 G T STK31 Missense_Mutation p.S51I 0.20 deleterious(0) possibly_damaging(0.74) TCGA-CN-A497-01 7 44553197 44553197 G C NPC1L1 Missense_Mutation p.A1310G 0.28 tolerated(0.27) benign(0.14) TCGA-CN-A497-01 7 48626772 48626772 G A ABCA13 Missense_Mutation p.R4843H 0.47 benign(0.141) TCGA-CN-A497-01 7 49842419 49842419 G T VWC2 Missense_Mutation p.C270F 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-A497-01 7 50468093 50468093 A T IKZF1 Missense_Mutation p.E401V 0.18 tolerated(0.27) benign(0.018) TCGA-CN-A497-01 7 5427940 5427940 G A TNRC18 Silent p.G505G 0.30 TCGA-CN-A497-01 7 64438807 64438807 A T ZNF117 Missense_Mutation p.I381K 0.37 tolerated(1) benign(0.001) TCGA-CN-A497-01 7 65551735 65551735 G T ASL Missense_Mutation p.A177S 0.25 deleterious(0.02) possibly_damaging(0.477) TCGA-CN-A497-01 7 81392160 81392160 A T HGF Silent p.I39I 0.43 TCGA-CN-A497-01 7 82584024 82584024 G T PCLO Missense_Mutation p.P2082Q 0.20 unknown(0) TCGA-CN-A497-01 7 87757924 87757924 G C ADAM22 Missense_Mutation p.R229P 0.30 deleterious(0.04) benign(0.092) TCGA-CN-A497-01 7 91643574 91643574 A T AKAP9 Nonsense_Mutation p.K1182* 0.50 TCGA-CN-A497-01 8 104419928 104419928 C A SLC25A32 Missense_Mutation p.G80V 0.20 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 8 109797357 109797358 - C TMEM74 5'UTR 0.21 TCGA-CN-A497-01 8 110431352 110431352 T A PKHD1L1 Missense_Mutation p.L796Q 0.22 tolerated(0.14) possibly_damaging(0.779) TCGA-CN-A497-01 8 110499017 110499017 G A PKHD1L1 Missense_Mutation p.G3283S 0.30 tolerated(0.59) benign(0.016) TCGA-CN-A497-01 8 110499018 110499018 G A PKHD1L1 Missense_Mutation p.G3283D 0.31 deleterious(0.01) benign(0.424) TCGA-CN-A497-01 8 113301620 113301620 C A CSMD3 Missense_Mutation p.W3041L 0.24 deleterious(0.02) possibly_damaging(0.584) TCGA-CN-A497-01 8 113529454 113529454 C A CSMD3 Missense_Mutation p.S1522I 0.22 tolerated(0.08) probably_damaging(0.991) TCGA-CN-A497-01 8 113529455 113529455 C T CSMD3 Splice_Site p.X1522_splice 0.22 TCGA-CN-A497-01 8 114449096 114449096 C T CSMD3 5'UTR 0.18 TCGA-CN-A497-01 8 125083772 125083772 C A FER1L6 Missense_Mutation p.P1331H 0.38 deleterious(0) benign(0.013) TCGA-CN-A497-01 8 12870338 12870338 G T KIAA1456 Missense_Mutation p.E100D 0.42 tolerated(0.08) benign(0.049) TCGA-CN-A497-01 8 139163784 139163784 A C FAM135B Silent p.A978A 0.25 TCGA-CN-A497-01 8 145096219 145096219 C A SPATC1 Missense_Mutation p.R465S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A497-01 8 145161460 145161460 A G MAF1 Missense_Mutation p.Y168C 0.25 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 8 19316149 19316149 G T CSGALNACT1 Silent p.I213I 0.44 TCGA-CN-A497-01 8 51705285 51705285 G C SNTG1 Missense_Mutation p.A484P 0.21 deleterious(0) probably_damaging(0.994) TCGA-CN-A497-01 8 52321744 52321744 A T PXDNL Missense_Mutation p.L814M 0.25 tolerated(0.16) possibly_damaging(0.609) TCGA-CN-A497-01 8 59059284 59059284 C A FAM110B Silent p.V165V 0.35 TCGA-CN-A497-01 8 62212468 62212468 G T CLVS1 Missense_Mutation p.A28S 0.52 tolerated(0.35) benign(0.016) TCGA-CN-A497-01 8 67514665 67514665 C A MYBL1 Missense_Mutation p.W38C 0.35 deleterious(0) probably_damaging(1) TCGA-CN-A497-01 8 68152517 68152517 C A ARFGEF1 Missense_Mutation p.W953C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CN-A497-01 8 73958220 73958220 A T TERF1 Missense_Mutation p.N390Y 0.48 deleterious(0.02) possibly_damaging(0.703) TCGA-CN-A497-01 8 97157062 97157062 A T GDF6 Missense_Mutation p.L366Q 0.28 deleterious(0) probably_damaging(0.997) TCGA-CN-A497-01 9 104302796 104302796 C T RNF20 Missense_Mutation p.L108F 0.36 deleterious(0.01) benign(0.001) TCGA-CN-A497-01 9 125004299 125004299 A G RBM18 Missense_Mutation p.I146T 0.61 deleterious(0) probably_damaging(0.997) TCGA-CN-A497-01 9 127563740 127563740 G T OLFML2A Silent p.V239V 0.59 TCGA-CN-A497-01 9 39118165 39118165 A G CNTNAP3 Silent p.C724C 0.21 TCGA-CN-A497-01 9 4118407 4118407 G T GLIS3 Missense_Mutation p.S357R 0.47 tolerated(0.09) probably_damaging(0.994) TCGA-CN-A497-01 9 84530616 84530616 G A SPATA31D5P RNA 0.26 TCGA-CN-A497-01 9 84532341 84532341 G T SPATA31D5P RNA 0.33 TCGA-CN-A497-01 9 90322049 90322049 C T DAPK1 Missense_Mutation p.P1355S 0.31 tolerated(0.55) benign(0.021) TCGA-CN-A497-01 9 90534066 90534066 T A SPATA31C1 Intron 0.33 TCGA-CN-A497-01 X 106144713 106144713 T A RIPPLY1 Missense_Mutation p.H96L 0.58 deleterious(0) probably_damaging(0.999) TCGA-CN-A497-01 X 110496308 110496308 C G CAPN6 Missense_Mutation p.G145A 0.60 deleterious(0) probably_damaging(0.976) TCGA-CN-A497-01 X 130217856 130217856 A G ARHGAP36 Silent p.R156R 0.75 TCGA-CN-A497-01 X 132351159 132351159 C A TFDP3 Missense_Mutation p.G377C 0.55 deleterious(0) probably_damaging(0.997) TCGA-CN-A497-01 X 138714555 138714555 T A MCF2 Missense_Mutation p.Q97L 0.60 deleterious(0) probably_damaging(0.999) TCGA-CN-A497-01 X 150348724 150348724 G T GPR50 Silent p.G223G 0.60 TCGA-CN-A497-01 X 18221633 18221633 G T BEND2 Missense_Mutation p.H299N 0.52 tolerated(0.21) benign(0.001) TCGA-CN-A497-01 X 26212373 26212373 G T MAGEB6 Missense_Mutation p.S137I 0.69 deleterious(0.03) possibly_damaging(0.766) TCGA-CN-A497-01 X 48887656 48887656 G C TFE3 3'UTR 0.73 TCGA-CN-A497-01 X 73524174 73524174 G C ZCCHC13 Missense_Mutation p.G25R 0.50 tolerated(0.33) benign(0.001) TCGA-CN-A497-01 X 73962345 73962345 G T KIAA2022 Missense_Mutation p.P683T 0.53 tolerated(0.19) benign(0.007) TCGA-CN-A497-01 X 74644541 74644541 C A ZDHHC15 Missense_Mutation p.V228L 0.75 tolerated(1) benign(0.004) TCGA-CN-A497-01 Y 3447854 3447854 G T TGIF2LY 3'UTR 0.92 TCGA-CN-A497-01 Y 6115424 6115424 C A TSPY2 Missense_Mutation p.L172M 0.39 tolerated(0.94) benign(0.262) TCGA-CN-A498-01 10 108459049 108459049 C T SORCS1 Missense_Mutation p.V446I 0.24 tolerated(0.29) benign(0.06) TCGA-CN-A498-01 10 117704333 117704333 G A ATRNL1 3'UTR 0.24 TCGA-CN-A498-01 10 25861686 25861686 C A GPR158 Silent p.L541L 0.19 TCGA-CN-A498-01 10 50598278 50598278 C A DRGX Silent p.L50L 0.36 TCGA-CN-A498-01 11 124971137 124971137 G T TMEM218 Missense_Mutation p.P58Q 0.39 deleterious(0) probably_damaging(1) TCGA-CN-A498-01 11 1269102 1269102 C G MUC5B Missense_Mutation p.F3664L 0.21 unknown(0) TCGA-CN-A498-01 11 17450176 17450176 C T ABCC8 Missense_Mutation p.R620H 0.31 tolerated(0.05) benign(0) TCGA-CN-A498-01 11 59210828 59210828 T A OR5A1 Missense_Mutation p.Y63N 0.25 deleterious(0.01) possibly_damaging(0.891) TCGA-CN-A498-01 11 65480121 65480121 G C KAT5 Intron 0.29 TCGA-CN-A498-01 11 6654847 6654847 G A DCHS1 Missense_Mutation p.R751W 0.38 deleterious(0.01) possibly_damaging(0.846) TCGA-CN-A498-01 11 70282397 70282397 C T CTTN Silent p.I596I 0.83 TCGA-CN-A498-01 12 121009002 121009002 C T RNF10 Silent p.L684L 0.27 TCGA-CN-A498-01 12 124144855 124144855 G A GTF2H3 3'UTR 0.43 TCGA-CN-A498-01 12 26592212 26592245 GGAAAAACTATTTGTTCCATGGTCCTATCATGCC - ITPR2 Frame_Shift_Del p.R2153Lfs*30 0.19 TCGA-CN-A498-01 12 49992673 49992673 G A FAM186B Silent p.A743A 0.15 TCGA-CN-A498-01 12 53876750 53876750 G T MAP3K12 Missense_Mutation p.L613I 0.32 tolerated_low_confidence(0.41) benign(0.106) TCGA-CN-A498-01 12 54963106 54963106 C A PDE1B Missense_Mutation p.F122L 0.27 tolerated(0.05) probably_damaging(0.983) TCGA-CN-A498-01 12 55795041 55795041 G A OR6C65 Missense_Mutation p.M243I 0.25 deleterious_low_confidence(0.05) benign(0.06) TCGA-CN-A498-01 12 57135538 57135538 T C PRIM1 Missense_Mutation p.R278G 0.26 tolerated(0.2) benign(0.04) TCGA-CN-A498-01 12 72366470 72366470 C G TPH2 Silent p.L260L 0.24 TCGA-CN-A498-01 12 76739591 76739591 T C BBS10 3'UTR 0.41 TCGA-CN-A498-01 13 25074496 25074496 G A PARP4 Missense_Mutation p.P120L 0.29 tolerated(0.42) benign(0) TCGA-CN-A498-01 13 25671519 25671519 C G PABPC3 Missense_Mutation p.Q395E 0.11 tolerated(0.12) benign(0.427) TCGA-CN-A498-01 13 95055334 95055334 G C GPC6 Missense_Mutation p.E511Q 0.44 tolerated(0.47) possibly_damaging(0.529) TCGA-CN-A498-01 14 104026912 104026912 C T BAG5 Missense_Mutation p.R238Q 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.833) TCGA-CN-A498-01 14 107170006 107170006 G T IGHV1-69 Missense_Mutation p.D92E 0.17 deleterious(0.04) benign(0.436) TCGA-CN-A498-01 14 22102498 22102498 C T OR10G2 Silent p.L167L 0.35 TCGA-CN-A498-01 14 24885364 24885365 - T NYNRIN Frame_Shift_Ins p.A1471Cfs*15 0.10 TCGA-CN-A498-01 14 94756570 94756570 C G SERPINA10 Missense_Mutation p.E121Q 0.25 tolerated(0.2) benign(0.005) TCGA-CN-A498-01 15 71276542 71276542 A C LRRC49 Missense_Mutation p.Q377P 0.06 tolerated(0.11) benign(0.003) TCGA-CN-A498-01 15 84651422 84651422 A T ADAMTSL3 Missense_Mutation p.E1014D 0.29 tolerated(0.22) benign(0.002) TCGA-CN-A498-01 15 92706316 92706316 A G SLCO3A1 Missense_Mutation p.Y695C 0.28 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-CN-A498-01 16 1395034 1395034 C T BAIAP3 Missense_Mutation p.S660L 0.30 tolerated(0.08) benign(0.003) TCGA-CN-A498-01 16 3526325 3526325 G T NAA60 Missense_Mutation p.W33L 0.27 tolerated(0.09) benign(0.081) TCGA-CN-A498-01 16 5065064 5065064 T A SEC14L5 3'UTR 0.24 TCGA-CN-A498-01 16 56704426 56704426 T C MT1H Missense_Mutation p.C13R 0.23 deleterious(0) probably_damaging(0.989) TCGA-CN-A498-01 16 67968422 67968422 T A PSMB10 3'UTR 0.25 TCGA-CN-A498-01 16 76592387 76592387 G A CNTNAP4 Missense_Mutation p.G1172D 0.30 deleterious(0) probably_damaging(1) TCGA-CN-A498-01 17 19554870 19554870 A G ALDH3A2 Missense_Mutation p.N55S 0.52 tolerated(0.15) benign(0.015) TCGA-CN-A498-01 17 2966055 2966055 T C OR1D5 Missense_Mutation p.M283V 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-CN-A498-01 17 39036112 39036112 G A KRT20 Missense_Mutation p.R291C 0.32 deleterious(0) probably_damaging(0.959) TCGA-CN-A498-01 17 7577048 7577048 T - TP53 Frame_Shift_Del p.H297Pfs*48 0.32 TCGA-CN-A498-01 17 8438760 8438760 C T MYH10 Silent p.V613V 0.18 TCGA-CN-A498-01 18 72167227 72167227 C T CNDP2 Silent p.L7L 0.26 TCGA-CN-A498-01 19 1091820 1091820 G A POLR2E Nonsense_Mutation p.Q107* 0.22 TCGA-CN-A498-01 19 12243777 12243777 A C ZNF20 Silent p.S408S 0.10 TCGA-CN-A498-01 19 42600296 42600296 C T POU2F2 Missense_Mutation p.E201K 0.41 deleterious(0) probably_damaging(0.998) TCGA-CN-A498-01 19 53015266 53015266 T C ZNF578 Silent p.C544C 0.26 TCGA-CN-A498-01 19 53304912 53304912 C G ZNF28 Silent p.G62G 0.21 TCGA-CN-A498-01 19 54188333 54188333 T C MIR515-2 RNA 0.28 TCGA-CN-A498-01 19 5622657 5622657 C T SAFB2 Missense_Mutation p.E24K 0.33 deleterious(0) benign(0.097) TCGA-CN-A498-01 19 6380687 6380687 C T GTF2F1 Missense_Mutation p.E416K 0.24 tolerated(0.31) benign(0.154) TCGA-CN-A498-01 19 6696667 6696667 C T C3 Missense_Mutation p.E934K 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-CN-A498-01 19 9577328 9577328 C A ZNF560 Missense_Mutation p.E765D 0.25 deleterious(0.04) possibly_damaging(0.874) TCGA-CN-A498-01 1 104160597 104160597 G A AMY2A Missense_Mutation p.V64I 0.25 tolerated(0.97) benign(0.002) TCGA-CN-A498-01 1 120468088 120468088 C G NOTCH2 Missense_Mutation p.D1451H 0.20 deleterious(0) probably_damaging(0.997) TCGA-CN-A498-01 1 14107666 14107666 G T PRDM2 Missense_Mutation p.V1126F 0.21 unknown(0) TCGA-CN-A498-01 1 155408358 155408358 G C ASH1L Nonsense_Mutation p.S1863* 0.16 TCGA-CN-A498-01 1 196879474 196879474 G A CFHR4 Missense_Mutation p.R287K 0.15 tolerated(0.75) benign(0.01) TCGA-CN-A498-01 1 197898183 197898183 G T LHX9 Nonsense_Mutation p.E330* 0.18 TCGA-CN-A498-01 1 198719713 198719713 C G PTPRC Silent p.V1055V 0.15 TCGA-CN-A498-01 1 201350928 201350928 G A LAD1 3'UTR 0.23 TCGA-CN-A498-01 1 203652501 203652501 T A ATP2B4 Missense_Mutation p.S56R 0.23 tolerated(1) benign(0.001) TCGA-CN-A498-01 1 218520231 218520231 T G TGFB2 Missense_Mutation p.V63G 0.31 deleterious(0.05) benign(0.105) TCGA-CN-A498-01 1 244614999 244614999 C A ADSS Nonsense_Mutation p.E41* 0.35 TCGA-CN-A498-01 1 247151417 247151417 A T ZNF695 Missense_Mutation p.W134R 0.21 deleterious(0.04) benign(0.177) TCGA-CN-A498-01 1 28211938 28211938 G A THEMIS2 Missense_Mutation p.A618T 0.18 tolerated(1) benign(0.002) TCGA-CN-A498-01 1 52281983 52281983 C T NRD1 Splice_Site p.X548_splice 0.20 TCGA-CN-A498-01 1 55534753 55534753 C T USP24 Missense_Mutation p.E2610K 0.36 deleterious_low_confidence(0.03) benign(0.108) TCGA-CN-A498-01 1 65270776 65270776 G C RAVER2 Missense_Mutation p.E454Q 0.20 tolerated(0.1) possibly_damaging(0.875) TCGA-CN-A498-01 1 66102125 66102125 G T LEPR Missense_Mutation p.E975D 0.11 tolerated(0.24) possibly_damaging(0.893) TCGA-CN-A498-01 20 13846130 13846130 A G SEL1L2 Intron 0.25 TCGA-CN-A498-01 20 25205869 25205869 G A ENTPD6 Silent p.Q424Q 0.22 TCGA-CN-A498-01 20 31022592 31022592 C T ASXL1 Nonsense_Mutation p.R693* 0.20 TCGA-CN-A498-01 20 50768911 50768911 G A ZFP64 Missense_Mutation p.S607L 0.21 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-CN-A498-01 21 30723990 30723990 C G BACH1-IT1 RNA 0.19 TCGA-CN-A498-01 21 43524048 43524048 C G UMODL1 Missense_Mutation p.S457C 0.21 deleterious(0) benign(0.108) TCGA-CN-A498-01 22 24829669 24829680 CATTGACCGCTA - ADORA2A In_Frame_Del p.D101_I104del 0.24 TCGA-CN-A498-01 22 44237688 44237688 G A SULT4A1 Silent p.I98I 0.35 TCGA-CN-A498-01 2 122145474 122145474 C A CLASP1 Missense_Mutation p.Q1044H 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-CN-A498-01 2 166003509 166003509 C G SCN3A Missense_Mutation p.D471H 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-CN-A498-01 2 189387546 189387546 A T GULP1 Nonsense_Mutation p.K52* 0.25 TCGA-CN-A498-01 2 224623417 224623417 C G AP1S3 3'UTR 0.23 TCGA-CN-A498-01 2 241570030 241570030 G T GPR35 Missense_Mutation p.A252S 0.07 deleterious(0.01) possibly_damaging(0.891) TCGA-CN-A498-01 2 61597522 61597522 C T USP34 Silent p.L395L 0.21 TCGA-CN-A498-01 3 113172487 113172487 C T SPICE1 Silent p.L656L 0.23 TCGA-CN-A498-01 3 142133018 142133018 G C XRN1 Missense_Mutation p.L518V 0.16 deleterious(0) probably_damaging(0.991) TCGA-CN-A498-01 3 142521123 142521123 C T TRPC1 Missense_Mutation p.S565L 0.17 tolerated(0.28) benign(0.003) TCGA-CN-A498-01 3 15637898 15637898 T C HACL1 Missense_Mutation p.T74A 0.40 deleterious(0) probably_damaging(0.912) TCGA-CN-A498-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.16 tolerated(0.11) possibly_damaging(0.529) TCGA-CN-A498-01 3 184060002 184060002 C G FAM131A Silent p.L158L 0.17 TCGA-CN-A498-01 3 40231499 40231500 - G MYRIP Frame_Shift_Ins p.S404Rfs*2 0.30 TCGA-CN-A498-01 3 52740832 52740832 C A SPCS1 Nonsense_Mutation p.Y107* 0.33 TCGA-CN-A498-01 3 56657518 56657518 T C FAM208A 3'UTR 0.26 TCGA-CN-A498-01 3 7348270 7348270 C G GRM7 Missense_Mutation p.P322A 0.26 tolerated(0.27) benign(0.022) TCGA-CN-A498-01 4 153332882 153332882 G C FBXW7 Nonsense_Mutation p.S25* 0.41 TCGA-CN-A498-01 4 1944259 1944259 A G WHSC1 Intron 0.20 TCGA-CN-A498-01 5 101627081 101627081 G A SLCO4C1 Silent p.F195F 0.14 TCGA-CN-A498-01 5 13708257 13708257 G T DNAH5 Missense_Mutation p.A4438D 0.28 possibly_damaging(0.887) TCGA-CN-A498-01 5 140794641 140794641 G A PCDHGA10 Silent p.A633A 0.09 TCGA-CN-A498-01 5 150311004 150311004 C G ZNF300P1 RNA 0.36 TCGA-CN-A498-01 5 180057035 180057035 G A FLT4 Missense_Mutation p.T195M 0.51 deleterious(0.03) possibly_damaging(0.447) TCGA-CN-A498-01 5 34007993 34007993 G C AMACR Missense_Mutation p.S44R 0.25 deleterious(0.01) benign(0.03) TCGA-CN-A498-01 5 482229 482229 C T SLC9A3 Missense_Mutation p.R467K 0.17 tolerated(0.14) benign(0.008) TCGA-CN-A498-01 5 96245440 96245440 C T ERAP2 Nonsense_Mutation p.Q776* 0.20 TCGA-CN-A498-01 5 98209410 98209410 C T CHD1 Missense_Mutation p.R1153Q 0.23 tolerated(0.54) benign(0.056) TCGA-CN-A498-01 6 109814540 109814540 C G AK9 3'UTR 0.20 TCGA-CN-A498-01 6 131571660 131571660 G C AKAP7 Intron 0.18 TCGA-CN-A498-01 6 134492289 134492289 C T SGK1 Missense_Mutation p.E399K 0.29 tolerated(0.26) probably_damaging(0.959) TCGA-CN-A498-01 6 137243653 137243653 C G SLC35D3 Silent p.L29L 0.15 TCGA-CN-A498-01 6 152651578 152651578 G T SYNE1 Missense_Mutation p.Q4748K 0.19 benign(0.004) TCGA-CN-A498-01 6 152737534 152737534 G A SYNE1 Missense_Mutation p.A2013V 0.24 possibly_damaging(0.65) TCGA-CN-A498-01 6 18160204 18160204 C T KDM1B Silent p.S26S 0.26 TCGA-CN-A498-01 6 27114533 27114533 C T HIST1H2BK Silent p.S15S 0.17 TCGA-CN-A498-01 6 44281062 44281062 G T AARS2 5'UTR 0.38 TCGA-CN-A498-01 6 46518114 46518114 G A CYP39A1 Nonsense_Mutation p.Q467* 0.24 TCGA-CN-A498-01 6 49803038 49803038 C T CRISP1 Silent p.E247E 0.19 TCGA-CN-A498-01 7 105664841 105664841 T A CDHR3 Nonsense_Mutation p.Y697* 0.17 TCGA-CN-A498-01 7 11457183 11457183 T C THSD7A Missense_Mutation p.Y1144C 0.21 tolerated(0.12) probably_damaging(0.984) TCGA-CN-A498-01 7 148963814 148963814 C A ZNF783 Missense_Mutation p.A138D 0.09 deleterious(0.05) benign(0.026) TCGA-CN-A498-01 7 151878682 151878682 T C KMT2C Missense_Mutation p.N2088S 0.20 benign(0.011) TCGA-CN-A498-01 7 36194453 36194453 G A EEPD1 Missense_Mutation p.V174I 0.15 tolerated(1) benign(0.004) TCGA-CN-A498-01 7 64388278 64388278 C T ZNF273 Missense_Mutation p.S191L 0.26 tolerated(0.18) benign(0.136) TCGA-CN-A498-01 7 77423609 77423609 C G TMEM60 Missense_Mutation p.D28H 0.31 deleterious(0) probably_damaging(0.998) TCGA-CN-A498-01 7 77423688 77423688 C T TMEM60 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) benign(0.38) TCGA-CN-A498-01 7 82764134 82764134 C T PCLO Missense_Mutation p.S911N 0.22 unknown(0) TCGA-CN-A498-01 8 102381677 102381677 G T NACAP1 RNA 0.39 TCGA-CN-A498-01 8 105263991 105263991 A C RIMS2 Missense_Mutation p.R1331S 0.17 deleterious_low_confidence(0.01) benign(0.316) TCGA-CN-A498-01 8 132051983 132051983 T G ADCY8 Silent p.L199L 0.06 TCGA-CN-A498-01 8 145001012 145001012 T C PLEC Silent p.T1465T 0.09 TCGA-CN-A498-01 8 26366057 26366057 T G PNMA2 Missense_Mutation p.D72A 0.40 tolerated(0.6) benign(0.122) TCGA-CN-A498-01 8 77766065 77766065 G A ZFHX4 Missense_Mutation p.R2303Q 0.28 possibly_damaging(0.608) TCGA-CN-A498-01 8 77767078 77767078 G A ZFHX4 Missense_Mutation p.E2641K 0.25 probably_damaging(0.98) TCGA-CN-A498-01 9 34517452 34517452 G A DNAI1 Missense_Mutation p.R663H 0.10 deleterious(0) probably_damaging(0.996) TCGA-CN-A498-01 9 8436642 8436642 T G PTPRD Missense_Mutation p.I1346L 0.06 tolerated(0.16) benign(0.002) TCGA-CN-A498-01 9 95086373 95086373 A G NOL8 Missense_Mutation p.L24P 0.51 deleterious(0) probably_damaging(0.999) TCGA-CN-A498-01 X 101581440 101581440 C T NXF2 3'UTR 0.25 TCGA-CN-A498-01 X 102586458 102586458 C T TCEAL7 Nonsense_Mutation p.Q43* 0.34 TCGA-CN-A498-01 X 144905535 144905535 G - SLITRK2 Frame_Shift_Del p.D532Tfs*9 0.19 TCGA-CN-A498-01 X 153648421 153648421 C T TAZ Silent p.L212L 0.26 TCGA-CN-A498-01 X 18662615 18662615 C A RS1 Missense_Mutation p.V153L 0.27 tolerated(0.56) benign(0.026) TCGA-CN-A498-01 X 27998101 27998101 C T DCAF8L1 Missense_Mutation p.E451K 0.17 deleterious(0) possibly_damaging(0.781) TCGA-CN-A498-01 X 32519946 32519946 T C DMD Missense_Mutation p.E769G 0.30 possibly_damaging(0.888) TCGA-CN-A498-01 X 47486637 47486637 C T CFP Silent p.K223K 0.23 TCGA-CN-A498-01 X 48208993 48208993 A G SSX3 Intron 0.22 TCGA-CN-A498-01 X 50052898 50052898 G A CCNB3 Missense_Mutation p.E577K 0.37 tolerated(0.3) benign(0.057) TCGA-CN-A498-01 X 53230783 53230783 C A KDM5C Missense_Mutation p.M670I 0.26 deleterious(0.01) benign(0.437) TCGA-CN-A498-01 X 57620826 57620826 C T ZXDB Missense_Mutation p.A782V 0.20 tolerated(0.07) benign(0.003) TCGA-CN-A498-01 X 70351428 70351428 C A MED12 Missense_Mutation p.S1359Y 0.25 probably_damaging(0.995) TCGA-CN-A498-01 X 70389690 70389690 G A NLGN3 Missense_Mutation p.A764T 0.36 tolerated_low_confidence(0.31) benign(0) TCGA-CN-A498-01 X 74517418 74517418 C G UPRT Intron 0.18 TCGA-CN-A498-01 X 92927424 92927424 C G NAP1L3 Missense_Mutation p.D294H 0.22 tolerated(0.07) benign(0.007) TCGA-CN-A499-01 10 54031235 54031235 C T PRKG1 Silent p.S433S 0.36 TCGA-CN-A499-01 11 134022824 134022824 G A NCAPD3 3'UTR 0.10 TCGA-CN-A499-01 11 17432096 17432096 G A ABCC8 Silent p.T887T 0.04 TCGA-CN-A499-01 11 55890275 55890275 G A OR8H3 Missense_Mutation p.A143T 0.25 tolerated(0.41) benign(0.021) TCGA-CN-A499-01 11 61183827 61183827 G A CPSF7 Missense_Mutation p.P282S 0.29 tolerated(0.38) probably_damaging(0.986) TCGA-CN-A499-01 11 67021746 67021746 C T KDM2A Missense_Mutation p.T1055M 0.28 deleterious(0) probably_damaging(0.962) TCGA-CN-A499-01 12 113388755 113388755 C G OAS3 Missense_Mutation p.S544R 0.07 tolerated(0.07) benign(0.013) TCGA-CN-A499-01 12 52652110 52652110 G A KRT121P RNA 0.04 TCGA-CN-A499-01 12 75436120 75436120 C T KCNC2 3'UTR 0.33 TCGA-CN-A499-01 13 111545367 111545367 G A ANKRD10 Intron 0.21 TCGA-CN-A499-01 13 48941648 48941648 C T RB1 Nonsense_Mutation p.R320* 0.21 TCGA-CN-A499-01 14 23944385 23944385 C T NGDN Silent p.L50L 0.51 TCGA-CN-A499-01 15 42442617 42442619 GAG - PLA2G4F In_Frame_Del p.S280del 0.37 TCGA-CN-A499-01 16 27802668 27802668 C T GSG1L 3'UTR 0.13 TCGA-CN-A499-01 16 4016050 4016050 C T ADCY9 Missense_Mutation p.R1263H 0.21 tolerated_low_confidence(0.07) benign(0.16) TCGA-CN-A499-01 16 8829602 8829602 C T ABAT Silent p.A2A 0.19 TCGA-CN-A499-01 17 10426662 10426662 C T MYH2 Missense_Mutation p.R1847H 0.19 tolerated(0.08) possibly_damaging(0.539) TCGA-CN-A499-01 17 18098327 18098327 C T ALKBH5 Nonsense_Mutation p.R277* 0.20 TCGA-CN-A499-01 17 39672397 39672399 CCG - KRT15 In_Frame_Del p.A286del 0.32 TCGA-CN-A499-01 17 45452136 45452136 A G EFCAB13 Silent p.K392K 0.34 TCGA-CN-A499-01 17 52993152 52993152 C T TOM1L1 Nonsense_Mutation p.R217* 0.04 TCGA-CN-A499-01 18 20573147 20573147 G C RBBP8 Missense_Mutation p.E453Q 0.35 deleterious(0.01) possibly_damaging(0.798) TCGA-CN-A499-01 19 35613736 35613736 C T FXYD3 Silent p.I112I 0.04 TCGA-CN-A499-01 19 39735521 39735521 C G IFNL3 Silent p.G29G 0.21 TCGA-CN-A499-01 19 42260787 42260787 A G CEACAM6 Missense_Mutation p.N115S 0.06 tolerated(0.15) benign(0.126) TCGA-CN-A499-01 19 4525830 4525830 C T PLIN5 Missense_Mutation p.E179K 0.11 tolerated(0.54) benign(0.336) TCGA-CN-A499-01 19 7709617 7709617 C T STXBP2 Missense_Mutation p.L409F 0.19 deleterious(0) probably_damaging(0.991) TCGA-CN-A499-01 19 7709629 7709629 C T STXBP2 Missense_Mutation p.L413F 0.17 tolerated(0.73) possibly_damaging(0.854) TCGA-CN-A499-01 1 202715271 202715271 G A KDM5B Missense_Mutation p.R733W 0.22 deleterious(0) possibly_damaging(0.846) TCGA-CN-A499-01 1 247921375 247921375 T C OR1C1 Missense_Mutation p.S112G 0.34 tolerated(0.25) probably_damaging(0.935) TCGA-CN-A499-01 1 25701870 25701870 C T RHCE Missense_Mutation p.V375M 0.13 deleterious(0.02) possibly_damaging(0.511) TCGA-CN-A499-01 2 109379847 109379847 C T RANBP2 Missense_Mutation p.T951M 0.28 deleterious(0) benign(0.078) TCGA-CN-A499-01 2 170936339 170936339 G A UBR3 Missense_Mutation p.E1739K 0.08 tolerated(0.25) benign(0.058) TCGA-CN-A499-01 2 175335263 175335263 C T GPR155 Missense_Mutation p.C294Y 0.07 deleterious(0) probably_damaging(0.986) TCGA-CN-A499-01 2 228149037 228149037 G C COL4A3 Missense_Mutation p.D953H 0.19 unknown(0) TCGA-CN-A499-01 2 62053573 62053573 G A FAM161A 3'UTR 0.19 TCGA-CN-A499-01 2 63281299 63281299 C T OTX1 Missense_Mutation p.A72V 0.25 deleterious(0) probably_damaging(0.998) TCGA-CN-A499-01 2 65300090 65300090 A G CEP68 Silent p.K620K 0.37 TCGA-CN-A499-01 3 186006592 186006592 A G DGKG Missense_Mutation p.S151P 0.13 tolerated(0.33) benign(0.001) TCGA-CN-A499-01 3 36527664 36527664 C T STAC Missense_Mutation p.R204C 0.24 deleterious(0) probably_damaging(0.973) TCGA-CN-A499-01 4 183549836 183549836 C A TENM3 Missense_Mutation p.T261K 0.33 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-CN-A499-01 4 71232575 71232575 A T SMR3A Missense_Mutation p.Q90L 0.30 tolerated_low_confidence(0.3) unknown(0) TCGA-CN-A499-01 5 13751205 13751205 G T DNAH5 Silent p.V3731V 0.28 TCGA-CN-A499-01 5 140348695 140348695 C T PCDHAC2 Nonsense_Mutation p.R782* 0.17 TCGA-CN-A499-01 5 178139678 178139678 C T ZNF354A Missense_Mutation p.E401K 0.10 tolerated(0.1) benign(0.038) TCGA-CN-A499-01 5 24511440 24511440 T C CDH10 Missense_Mutation p.K333R 0.08 tolerated(0.3) benign(0.001) TCGA-CN-A499-01 6 127768852 127768852 T C KIAA0408 Silent p.P204P 0.12 TCGA-CN-A499-01 6 26156678 26156680 GAA - HIST1H1E In_Frame_Del p.K23del 0.10 TCGA-CN-A499-01 6 51890409 51890409 G A PKHD1 Missense_Mutation p.S1400L 0.24 deleterious(0.03) possibly_damaging(0.537) TCGA-CN-A499-01 7 86415688 86415688 G A GRM3 Missense_Mutation p.D194N 0.26 deleterious(0) probably_damaging(1) TCGA-CN-A499-01 8 142450415 142450415 C T CTD-3064M3.7 3'Flank 0.44 TCGA-CN-A499-01 9 119770528 119770528 G A ASTN2 Silent p.F427F 0.28 TCGA-CN-A499-01 9 8501020 8501020 G T PTPRD Missense_Mutation p.P621Q 0.24 tolerated(0.57) unknown(0) TCGA-CN-A499-01 X 129190058 129190058 G A BCORL1 Missense_Mutation p.D1695N 0.12 benign(0.248) TCGA-CN-A499-01 X 153458955 153458955 G A OPN1MW Silent p.T267T 0.40 TCGA-CN-A499-01 X 64196279 64196279 G A ZC4H2 5'UTR 0.12 TCGA-CN-A49A-01 10 13234263 13234263 C T MCM10 Nonsense_Mutation p.Q510* 0.07 TCGA-CN-A49A-01 10 71175906 71175906 G T TACR2 Silent p.I58I 0.50 TCGA-CN-A49A-01 10 97916386 97916386 G A ZNF518A RNA 0.50 TCGA-CN-A49A-01 11 18320447 18320447 G A HPS5 Silent p.L352L 0.19 TCGA-CN-A49A-01 11 40136786 40136786 C A LRRC4C Missense_Mutation p.A353S 0.22 deleterious(0.02) benign(0.175) TCGA-CN-A49A-01 11 56043898 56043898 A G OR5T1 Missense_Mutation p.I262V 0.14 tolerated(0.09) benign(0.084) TCGA-CN-A49A-01 11 58956681 58956681 C T DTX4 Silent p.L348L 0.24 TCGA-CN-A49A-01 11 596953 596953 C G PHRF1 Silent p.L217L 0.11 TCGA-CN-A49A-01 11 66359152 66359152 G A CCDC87 Silent p.A445A 0.21 TCGA-CN-A49A-01 11 67431210 67431210 C T ALDH3B2 Missense_Mutation p.R299Q 0.51 tolerated(0.45) benign(0.023) TCGA-CN-A49A-01 11 6816739 6816739 C A OR6A2 Missense_Mutation p.M67I 0.19 deleterious(0) benign(0.155) TCGA-CN-A49A-01 11 7079661 7079661 A G NLRP14 Silent p.Q871Q 0.20 TCGA-CN-A49A-01 11 71293601 71293601 A C KRTAP5-11 Missense_Mutation p.S95A 0.26 tolerated_low_confidence(0.07) unknown(0) TCGA-CN-A49A-01 11 73078705 73078705 G T ARHGEF17 Missense_Mutation p.M2024I 0.50 tolerated(0.27) benign(0.065) TCGA-CN-A49A-01 11 8483358 8483358 C G STK33 Silent p.T184T 0.12 TCGA-CN-A49A-01 12 112194215 112194215 G A ACAD10 Missense_Mutation p.D1071N 0.20 deleterious(0) benign(0.112) TCGA-CN-A49A-01 12 125432554 125432554 G A DHX37 Intron 0.31 TCGA-CN-A49A-01 12 78512009 78512009 G C NAV3 Missense_Mutation p.R991T 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-A49A-01 12 7982437 7982437 G C SLC2A14 Missense_Mutation p.I169M 0.37 deleterious(0) probably_damaging(0.962) TCGA-CN-A49A-01 13 106124954 106124954 C T DAOA Silent p.D67D 0.42 TCGA-CN-A49A-01 13 32868533 32868533 A T FRY Missense_Mutation p.D2870V 0.40 tolerated(0.28) benign(0.002) TCGA-CN-A49A-01 13 38171330 38171330 C A POSTN Missense_Mutation p.G70V 0.35 deleterious(0) probably_damaging(1) TCGA-CN-A49A-01 14 102549247 102549247 C T HSP90AA1 Intron 0.31 TCGA-CN-A49A-01 14 22891900 22891900 A G TRDV2 Missense_Mutation p.E71G 0.29 tolerated(0.06) possibly_damaging(0.815) TCGA-CN-A49A-01 14 23299247 23299247 C G MRPL52 Intron 0.12 TCGA-CN-A49A-01 14 23313973 23313973 T G MMP14 Missense_Mutation p.F429V 0.19 deleterious(0.03) possibly_damaging(0.882) TCGA-CN-A49A-01 14 24774225 24774225 G A NOP9 Missense_Mutation p.R612Q 0.12 deleterious(0.01) benign(0.178) TCGA-CN-A49A-01 14 68029424 68029424 C G PLEKHH1 Missense_Mutation p.S359C 0.43 tolerated_low_confidence(0.18) possibly_damaging(0.469) TCGA-CN-A49A-01 14 68249617 68249617 C G ZFYVE26 Missense_Mutation p.E1418Q 0.11 tolerated(0.62) benign(0.011) TCGA-CN-A49A-01 14 94156509 94156509 T C UNC79 Missense_Mutation p.W2240R 0.10 deleterious(0) probably_damaging(0.999) TCGA-CN-A49A-01 14 94405553 94405553 G A ASB2 Silent p.F506F 0.08 TCGA-CN-A49A-01 14 94405625 94405625 G A ASB2 Silent p.I482I 0.10 TCGA-CN-A49A-01 14 95085737 95085737 G C SERPINA3 Missense_Mutation p.K283N 0.12 deleterious(0) possibly_damaging(0.832) TCGA-CN-A49A-01 15 40565664 40565664 C G PAK6 Silent p.L536L 0.16 TCGA-CN-A49A-01 15 66601094 66601094 G A DIS3L Missense_Mutation p.R157K 0.17 tolerated(1) benign(0) TCGA-CN-A49A-01 16 1817212 1817212 C T MAPK8IP3 Missense_Mutation p.R1050C 0.37 deleterious(0) probably_damaging(0.998) TCGA-CN-A49A-01 16 1822038 1822038 G A MRPS34 3'UTR 0.54 TCGA-CN-A49A-01 16 87454250 87454250 C T ZCCHC14 Missense_Mutation p.V168M 0.43 tolerated(0.13) benign(0.045) TCGA-CN-A49A-01 17 2218973 2218973 G A SRR Missense_Mutation p.R40H 0.47 tolerated(0.1) benign(0.1) TCGA-CN-A49A-01 17 37596727 37596727 G C MED1 Missense_Mutation p.T104R 0.21 deleterious(0) probably_damaging(0.985) TCGA-CN-A49A-01 17 39149974 39149974 G T KRTAP3-3 3'UTR 0.29 TCGA-CN-A49A-01 17 59857704 59857704 G C BRIP1 Nonsense_Mutation p.S618* 0.27 TCGA-CN-A49A-01 17 75187292 75187292 C T SEC14L1 Silent p.V81V 0.30 TCGA-CN-A49A-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.54 deleterious(0) probably_damaging(0.998) TCGA-CN-A49A-01 17 79165012 79165012 C T AZI1 Missense_Mutation p.E916K 0.13 deleterious(0) possibly_damaging(0.801) TCGA-CN-A49A-01 17 8193374 8193374 C A RANGRF 3'UTR 0.50 TCGA-CN-A49A-01 18 21331018 21331018 C G LAMA3 Missense_Mutation p.S274C 0.46 probably_damaging(0.98) TCGA-CN-A49A-01 18 23619301 23619302 GA - SS18 Frame_Shift_Del p.N242Kfs*12 0.26 TCGA-CN-A49A-01 18 32650271 32650271 G T MAPRE2 Nonsense_Mutation p.E79* 0.14 TCGA-CN-A49A-01 18 42529917 42529917 C A SETBP1 Missense_Mutation p.D204E 0.40 tolerated(0.36) benign(0.057) TCGA-CN-A49A-01 18 48473584 48473584 C T ME2 3'UTR 0.40 TCGA-CN-A49A-01 19 18649113 18649113 C T FKBP8 Missense_Mutation p.G229S 0.27 deleterious(0) probably_damaging(1) TCGA-CN-A49A-01 19 35250735 35250735 G C ZNF599 Missense_Mutation p.S324C 0.33 deleterious(0.02) probably_damaging(0.984) TCGA-CN-A49A-01 19 35850546 35850546 G A FFAR3 Missense_Mutation p.G252S 0.13 tolerated(0.36) benign(0.045) TCGA-CN-A49A-01 19 44768478 44768478 C A ZNF233 5'UTR 0.31 TCGA-CN-A49A-01 19 50098372 50098372 G A PRR12 Silent p.Q260Q 0.31 TCGA-CN-A49A-01 19 50967672 50967672 C G MYBPC2 Missense_Mutation p.Q1100E 0.40 deleterious(0.05) possibly_damaging(0.831) TCGA-CN-A49A-01 19 54744756 54744756 G A LILRA6 Silent p.L302L 0.07 TCGA-CN-A49A-01 19 55087014 55087014 T C LILRA2 Missense_Mutation p.I316T 0.16 deleterious(0) probably_damaging(0.983) TCGA-CN-A49A-01 19 58944775 58944775 C T ZNF132 Missense_Mutation p.R679K 0.19 tolerated(0.18) benign(0.003) TCGA-CN-A49A-01 19 9059813 9059813 C A MUC16 Silent p.L9211L 0.25 TCGA-CN-A49A-01 19 9088537 9088537 G C MUC16 Nonsense_Mutation p.S1093* 0.21 TCGA-CN-A49A-01 1 116675767 116675767 G A MAB21L3 Nonsense_Mutation p.W290* 0.33 TCGA-CN-A49A-01 1 119964777 119964777 C G HSD3B2 Missense_Mutation p.S218C 0.28 deleterious(0) probably_damaging(0.992) TCGA-CN-A49A-01 1 144886198 144886198 C T PDE4DIP Silent p.E1012E 0.11 TCGA-CN-A49A-01 1 152277107 152277107 G A FLG Nonsense_Mutation p.R3419* 0.03 TCGA-CN-A49A-01 1 152277865 152277865 C T FLG Missense_Mutation p.R3166H 0.09 unknown(0) TCGA-CN-A49A-01 1 152278837 152278837 C T FLG Missense_Mutation p.R2842H 0.08 possibly_damaging(0.453) TCGA-CN-A49A-01 1 155723033 155723033 G T GON4L Missense_Mutation p.T1935N 0.13 deleterious_low_confidence(0.01) benign(0.02) TCGA-CN-A49A-01 1 158618302 158618302 A G SPTA1 Silent p.D1237D 0.23 TCGA-CN-A49A-01 1 17023363 17023363 C G ESPNP RNA 0.30 TCGA-CN-A49A-01 1 176564033 176564033 C T PAPPA2 Silent p.T431T 0.36 TCGA-CN-A49A-01 1 179460836 179460836 C A AXDND1 Missense_Mutation p.T752K 0.15 deleterious(0.01) benign(0.023) TCGA-CN-A49A-01 1 185094240 185094240 G C TRMT1L Nonsense_Mutation p.S532* 0.16 TCGA-CN-A49A-01 1 196927140 196927140 C T CFHR2 Missense_Mutation p.L184F 0.10 deleterious(0.02) possibly_damaging(0.677) TCGA-CN-A49A-01 1 205053122 205053122 G A TMEM81 Silent p.I109I 0.37 TCGA-CN-A49A-01 1 235606187 235606187 C T TBCE Missense_Mutation p.H454Y 0.14 deleterious(0.01) benign(0.011) TCGA-CN-A49A-01 1 243349162 243349162 G T CEP170 Missense_Mutation p.D495E 0.31 tolerated(0.07) probably_damaging(0.997) TCGA-CN-A49A-01 1 27876247 27876247 G A AHDC1 Nonsense_Mutation p.Q794* 0.20 TCGA-CN-A49A-01 1 33145259 33145259 G A RBBP4 Missense_Mutation p.D411N 0.36 deleterious(0.05) benign(0.012) TCGA-CN-A49A-01 1 33360275 33360275 G C TMEM54 3'UTR 0.25 TCGA-CN-A49A-01 1 35863113 35863113 G C ZMYM4 Missense_Mutation p.E1056Q 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-CN-A49A-01 1 45793531 45793531 G A HPDL Silent p.A237A 0.33 TCGA-CN-A49A-01 1 55072843 55072843 C T ACOT11 Silent p.D469D 0.21 TCGA-CN-A49A-01 1 71531381 71531381 C T ZRANB2 Intron 0.26 TCGA-CN-A49A-01 1 89616098 89616098 C T GBP7 Silent p.Q262Q 0.34 TCGA-CN-A49A-01 1 9778767 9778767 G A PIK3CD Missense_Mutation p.G346R 0.34 deleterious(0) probably_damaging(0.999) TCGA-CN-A49A-01 20 10632825 10632825 A G JAG1 Silent p.Y320Y 0.23 TCGA-CN-A49A-01 20 20453484 20453484 G C RALGAPA2 Silent p.L1828L 0.14 TCGA-CN-A49A-01 20 4705459 4705459 G A PRND Missense_Mutation p.G88S 0.22 tolerated_low_confidence(0.08) probably_damaging(0.99) TCGA-CN-A49A-01 21 35124151 35124151 C A ITSN1 Missense_Mutation p.S188Y 0.13 deleterious(0.04) unknown(0) TCGA-CN-A49A-01 21 42813654 42813654 A C MX1 Missense_Mutation p.K248Q 0.36 deleterious(0) probably_damaging(1) TCGA-CN-A49A-01 2 121047295 121047295 G A RALB Missense_Mutation p.V155M 0.03 deleterious(0.04) probably_damaging(0.975) TCGA-CN-A49A-01 2 166786745 166786745 C G TTC21B Missense_Mutation p.E342Q 0.32 deleterious(0.02) possibly_damaging(0.756) TCGA-CN-A49A-01 2 187604984 187604984 A T FAM171B Missense_Mutation p.N90Y 0.20 deleterious(0.04) probably_damaging(1) TCGA-CN-A49A-01 2 209324626 209324626 G T PTH2R Missense_Mutation p.W307C 0.26 deleterious(0) probably_damaging(0.975) TCGA-CN-A49A-01 2 219296650 219296650 G C VIL1 Missense_Mutation p.K391N 0.14 tolerated(0.15) benign(0.005) TCGA-CN-A49A-01 2 219527643 219527643 C T BCS1L Silent p.F309F 0.29 TCGA-CN-A49A-01 2 220501536 220501536 G A SLC4A3 Silent p.E852E 0.28 TCGA-CN-A49A-01 2 238785964 238785964 G A RAMP1 Missense_Mutation p.V51I 0.06 tolerated(0.91) benign(0.007) TCGA-CN-A49A-01 2 50149208 50149208 G A NRXN1 Silent p.D1506D 0.31 TCGA-CN-A49A-01 2 73786128 73786128 T C ALMS1 Missense_Mutation p.S3414P 0.54 benign(0.143) TCGA-CN-A49A-01 3 140281142 140281142 C A CLSTN2 Missense_Mutation p.S735Y 0.42 deleterious(0.02) benign(0.106) TCGA-CN-A49A-01 3 157296187 157296190 TACT - C3orf55 Intron 0.36 TCGA-CN-A49A-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.08 deleterious(0.02) probably_damaging(0.984) TCGA-CN-A49A-01 3 185184672 185184672 C G MAP3K13 Missense_Mutation p.P522A 0.47 deleterious(0.02) possibly_damaging(0.77) TCGA-CN-A49A-01 3 193048936 193048936 T G ATP13A5 Missense_Mutation p.Q479H 0.33 deleterious(0) probably_damaging(0.984) TCGA-CN-A49A-01 3 196388563 196388563 G C NRROS Missense_Mutation p.K683N 0.27 deleterious(0) probably_damaging(0.989) TCGA-CN-A49A-01 3 44856477 44856477 G T KIF15 Nonsense_Mutation p.E820* 0.21 TCGA-CN-A49A-01 3 49059931 49059931 G T NDUFAF3 Missense_Mutation p.G77V 0.14 deleterious(0) probably_damaging(1) TCGA-CN-A49A-01 3 49059932 49059932 C A NDUFAF3 Silent p.G77G 0.15 TCGA-CN-A49A-01 3 72842100 72842100 A G SHQ1 Missense_Mutation p.I383T 0.09 deleterious(0) probably_damaging(0.996) TCGA-CN-A49A-01 4 141888838 141888838 G T RNF150 Missense_Mutation p.A225E 0.20 deleterious(0) probably_damaging(0.996) TCGA-CN-A49A-01 4 145627831 145627831 C T HHIP Missense_Mutation p.S327F 0.27 deleterious(0.01) probably_damaging(0.925) TCGA-CN-A49A-01 4 162307078 162307078 C T FSTL5 Missense_Mutation p.E789K 0.23 tolerated(0.79) benign(0.022) TCGA-CN-A49A-01 4 178911756 178911756 G A LINC01098 3'UTR 0.32 TCGA-CN-A49A-01 4 187630588 187630588 G A FAT1 Nonsense_Mutation p.R132* 0.13 TCGA-CN-A49A-01 4 187630671 187630671 T - FAT1 Frame_Shift_Del p.N104Ifs*9 0.27 TCGA-CN-A49A-01 4 71693581 71693581 C T GRSF1 Missense_Mutation p.E375K 0.19 tolerated(0.06) benign(0.008) TCGA-CN-A49A-01 4 81283948 81283948 G A C4orf22 Missense_Mutation p.R51Q 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-CN-A49A-01 4 83582187 83582187 C T SCD5 Intron 0.03 TCGA-CN-A49A-01 5 112630103 112630103 G A MCC Intron 0.22 TCGA-CN-A49A-01 5 115783098 115783098 C G SEMA6A Silent p.R768R 0.23 TCGA-CN-A49A-01 5 129520570 129520570 G C CHSY3 Missense_Mutation p.D579H 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-CN-A49A-01 5 140222304 140222304 G C PCDHA8 Missense_Mutation p.E466D 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-A49A-01 5 180046339 180046339 G A FLT4 Missense_Mutation p.A892V 0.46 deleterious(0) probably_damaging(0.999) TCGA-CN-A49A-01 5 23522455 23522455 G A PRDM9 Missense_Mutation p.R184Q 0.05 deleterious(0.05) possibly_damaging(0.657) TCGA-CN-A49A-01 5 39308344 39308344 C G C9 Missense_Mutation p.E410Q 0.41 tolerated(0.53) benign(0.043) TCGA-CN-A49A-01 5 43388547 43388547 C T CCL28 Silent p.T32T 0.38 TCGA-CN-A49A-01 6 133072577 133072577 C T VNN2 Missense_Mutation p.E303K 0.10 tolerated(0.07) benign(0.005) TCGA-CN-A49A-01 6 31964273 31964273 A T C4A Missense_Mutation p.H1191L 0.07 deleterious(0.01) benign(0.236) TCGA-CN-A49A-01 6 52268989 52268991 CTT - PAQR8 In_Frame_Del p.F329del 0.40 TCGA-CN-A49A-01 6 70866224 70866224 G A COL19A1 Missense_Mutation p.R734Q 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A49A-01 7 105891451 105891451 C T NAMPT 3'UTR 0.48 TCGA-CN-A49A-01 7 105891639 105891639 C T NAMPT Missense_Mutation p.D456N 0.51 tolerated(0.39) benign(0.032) TCGA-CN-A49A-01 7 141414206 141414206 G T WEE2 Splice_Site p.X180_splice 0.13 TCGA-CN-A49A-01 7 142104180 142104180 G A TRBV6-9 Silent p.L95L 0.48 TCGA-CN-A49A-01 7 142498864 142498864 G A TRBC2 Silent p.V47V 0.11 TCGA-CN-A49A-01 7 150737591 150737591 C T ABCB8 Missense_Mutation p.R420W 0.32 deleterious(0) probably_damaging(0.999) TCGA-CN-A49A-01 7 30880454 30880454 G T FAM188B Missense_Mutation p.D479Y 0.22 deleterious(0.02) probably_damaging(0.922) TCGA-CN-A49A-01 7 6048720 6048720 C T PMS2 5'UTR 0.28 TCGA-CN-A49A-01 7 90585078 90585078 G A CDK14 Missense_Mutation p.R280K 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-CN-A49A-01 7 98446303 98446303 A T TMEM130 Missense_Mutation p.V341D 0.59 deleterious(0.01) possibly_damaging(0.776) TCGA-CN-A49A-01 8 11162347 11162347 C T MTMR9 Intron 0.28 TCGA-CN-A49A-01 8 144993270 144993270 G A PLEC Silent p.D3710D 0.37 TCGA-CN-A49A-01 8 145619370 145619370 C T CPSF1 Missense_Mutation p.D1273N 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-A49A-01 8 145998617 145998617 C G ZNF34 3'UTR 0.29 TCGA-CN-A49A-01 8 33230104 33230104 G C FUT10 Missense_Mutation p.F477L 0.59 tolerated(0.12) benign(0.288) TCGA-CN-A49A-01 8 67578153 67578153 C T VCPIP1 Nonsense_Mutation p.W347* 0.45 TCGA-CN-A49A-01 9 105767861 105767861 G C CYLC2 Missense_Mutation p.K316N 0.46 tolerated_low_confidence(0.06) unknown(0) TCGA-CN-A49A-01 9 114456558 114456558 G C C9orf84 Missense_Mutation p.P1026A 0.46 deleterious(0) probably_damaging(1) TCGA-CN-A49A-01 9 115648856 115648856 G T SLC46A2 Silent p.T418T 0.12 TCGA-CN-A49A-01 9 2086853 2086853 G A SMARCA2 Missense_Mutation p.D851N 0.19 benign(0.031) TCGA-CN-A49A-01 9 23704928 23704928 C G ELAVL2 Missense_Mutation p.D159H 0.15 deleterious(0) probably_damaging(0.987) TCGA-CN-A49A-01 9 34977143 34977143 C T KIAA1045 Missense_Mutation p.R305W 0.26 tolerated(0.18) benign(0) TCGA-CN-A49A-01 X 105153550 105153550 G A NRK Silent p.L640L 0.46 TCGA-CN-A49A-01 X 322205 322205 C T PPP2R3B Missense_Mutation p.E149K 0.43 tolerated(0.14) benign(0.067) TCGA-CN-A49A-01 X 75397552 75397552 G A PBDC1 Missense_Mutation p.V171I 0.60 tolerated_low_confidence(0.07) benign(0) TCGA-CN-A49A-01 X 79932685 79932685 G A BRWD3 Missense_Mutation p.S1611F 0.21 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-CN-A49B-01 10 12160760 12160760 C T DHTKD1 Silent p.L805L 0.30 TCGA-CN-A49B-01 10 28409531 28409531 C G MPP7 Missense_Mutation p.E228Q 0.22 deleterious(0.01) possibly_damaging(0.556) TCGA-CN-A49B-01 10 5791016 5791016 G C FAM208B Missense_Mutation p.E1878Q 0.27 deleterious(0.03) benign(0.312) TCGA-CN-A49B-01 10 70045062 70045062 G A PBLD Intron 0.36 TCGA-CN-A49B-01 10 73472316 73472316 G A C10orf105 3'UTR 0.62 TCGA-CN-A49B-01 10 94110966 94110966 A T MARCH5 3'UTR 0.29 TCGA-CN-A49B-01 11 102650335 102650335 G A MMP10 Silent p.L83L 0.59 TCGA-CN-A49B-01 11 111915886 111915886 A C DLAT Missense_Mutation p.T408P 0.40 tolerated(0.41) benign(0) TCGA-CN-A49B-01 11 460237 460237 A G PTDSS2 Missense_Mutation p.Y78C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CN-A49B-01 11 55944325 55944325 G A OR5J2 Missense_Mutation p.A78T 0.08 tolerated(0.65) benign(0.011) TCGA-CN-A49B-01 11 5906086 5906086 G A OR52E4 Silent p.G188G 0.30 TCGA-CN-A49B-01 11 61252826 61252826 C T PPP1R32 Missense_Mutation p.T176M 0.20 deleterious(0) probably_damaging(0.96) TCGA-CN-A49B-01 11 64536774 64536774 C A SF1 Nonsense_Mutation p.E359* 0.23 TCGA-CN-A49B-01 11 77412477 77412477 G A RSF1 Silent p.D599D 0.22 TCGA-CN-A49B-01 11 7981899 7981899 C A NLRP10 Silent p.G420G 0.17 TCGA-CN-A49B-01 12 2760764 2760764 C G CACNA1C Intron 0.04 TCGA-CN-A49B-01 12 28459840 28459840 C A CCDC91 Missense_Mutation p.L145I 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-CN-A49B-01 12 56428753 56428753 C T IKZF4 Missense_Mutation p.R466W 0.41 deleterious(0) probably_damaging(0.91) TCGA-CN-A49B-01 12 57181028 57181028 G T HSD17B6 Missense_Mutation p.D286Y 0.21 deleterious(0.02) possibly_damaging(0.903) TCGA-CN-A49B-01 12 645442 645442 C G B4GALNT3 Missense_Mutation p.P111R 0.43 deleterious(0.01) possibly_damaging(0.779) TCGA-CN-A49B-01 12 645455 645455 C T B4GALNT3 Silent p.L115L 0.42 TCGA-CN-A49B-01 12 675029 675029 T C NINJ2 Intron 0.46 TCGA-CN-A49B-01 12 69968445 69968445 C T FRS2 Missense_Mutation p.R413W 0.25 deleterious(0) benign(0.089) TCGA-CN-A49B-01 12 78516170 78516170 C T NAV3 Silent p.L1400L 0.05 TCGA-CN-A49B-01 12 960882 960882 T A WNK1 Intron 0.26 TCGA-CN-A49B-01 13 25283862 25283862 G A ATP12A Missense_Mutation p.V893I 0.28 tolerated(1) benign(0.043) TCGA-CN-A49B-01 13 36428695 36428695 G A DCLK1 Missense_Mutation p.R326C 0.33 deleterious(0) possibly_damaging(0.835) TCGA-CN-A49B-01 13 37011806 37011806 C A CCNA1 Missense_Mutation p.A113D 0.05 tolerated(0.41) benign(0.209) TCGA-CN-A49B-01 14 105419974 105419974 G T AHNAK2 Missense_Mutation p.A605D 0.08 benign(0.236) TCGA-CN-A49B-01 14 106321851 106321851 C T IGHM Missense_Mutation p.R128H 0.34 tolerated(0.06) probably_damaging(0.959) TCGA-CN-A49B-01 14 34419917 34419917 A C EGLN3 Missense_Mutation p.I14M 0.34 tolerated(0.07) benign(0.007) TCGA-CN-A49B-01 14 39870602 39870602 T C FBXO33 Missense_Mutation p.I392V 0.27 tolerated(0.06) benign(0.121) TCGA-CN-A49B-01 14 63447862 63447862 G A KCNH5 Missense_Mutation p.L224F 0.12 deleterious(0) probably_damaging(0.998) TCGA-CN-A49B-01 15 73614973 73614973 C T HCN4 Missense_Mutation p.R1154Q 0.19 tolerated_low_confidence(0.08) benign(0.231) TCGA-CN-A49B-01 15 74290542 74290542 C T PML Silent p.F109F 0.31 TCGA-CN-A49B-01 16 20648476 20648476 T A ACSM1 Intron 0.45 TCGA-CN-A49B-01 16 2813759 2813759 G C SRRM2 Missense_Mutation p.R1077T 0.04 unknown(0) TCGA-CN-A49B-01 16 67857567 67857567 C G TSNAXIP1 Missense_Mutation p.F88L 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-CN-A49B-01 16 72831849 72831849 G C ZFHX3 Missense_Mutation p.Q1578E 0.11 probably_damaging(0.93) TCGA-CN-A49B-01 16 76556067 76556067 C T CNTNAP4 Missense_Mutation p.L817F 0.35 deleterious(0) possibly_damaging(0.848) TCGA-CN-A49B-01 17 10222295 10222295 C T MYH13 Missense_Mutation p.E1184K 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-CN-A49B-01 17 21075498 21075498 G A DHRS7B Missense_Mutation p.G63E 0.19 deleterious(0) probably_damaging(1) TCGA-CN-A49B-01 17 29195371 29195371 G C ATAD5 Missense_Mutation p.R1085T 0.24 deleterious(0.01) benign(0.258) TCGA-CN-A49B-01 17 37885744 37885744 G C MIEN1 3'UTR 0.30 TCGA-CN-A49B-01 17 38285640 38285640 C T MSL1 Missense_Mutation p.R116C 0.15 deleterious(0) probably_damaging(0.998) TCGA-CN-A49B-01 17 40823067 40823067 C A PLEKHH3 Nonsense_Mutation p.E456* 0.09 TCGA-CN-A49B-01 17 42084858 42084858 G A NAGS Missense_Mutation p.E422K 0.19 deleterious(0.04) probably_damaging(1) TCGA-CN-A49B-01 17 43320687 43320687 C T FMNL1 Missense_Mutation p.A738V 0.38 tolerated(0.16) benign(0.121) TCGA-CN-A49B-01 17 4923965 4923965 G T KIF1C Missense_Mutation p.M643I 0.13 deleterious(0) benign(0.107) TCGA-CN-A49B-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.57 deleterious(0) probably_damaging(0.997) TCGA-CN-A49B-01 17 79973010 79973010 G A ASPSCR1 Silent p.L471L 0.16 TCGA-CN-A49B-01 17 8216367 8216367 G A ARHGEF15 Silent p.P243P 0.29 TCGA-CN-A49B-01 18 21487589 21487589 A G LAMA3 Missense_Mutation p.N2265S 0.37 benign(0.354) TCGA-CN-A49B-01 18 22805265 22805265 C T ZNF521 Missense_Mutation p.D873N 0.29 tolerated(0.27) possibly_damaging(0.899) TCGA-CN-A49B-01 18 47563359 47563359 C T MYO5B Missense_Mutation p.V106I 0.32 tolerated(0.22) probably_damaging(0.999) TCGA-CN-A49B-01 18 56939749 56939749 C G RAX Missense_Mutation p.E129D 0.19 tolerated(0.38) benign(0.042) TCGA-CN-A49B-01 18 580529 580529 G A CETN1 Missense_Mutation p.D41N 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-CN-A49B-01 19 10106792 10106792 G A COL5A3 Missense_Mutation p.L495F 0.11 unknown(0) TCGA-CN-A49B-01 19 36964259 36964259 C T ZNF566 Silent p.E37E 0.07 TCGA-CN-A49B-01 19 375821 375821 C T THEG Silent p.L50L 0.32 TCGA-CN-A49B-01 19 42473056 42473056 C G ATP1A3 Missense_Mutation p.Q913H 0.08 tolerated(0.07) probably_damaging(0.931) TCGA-CN-A49B-01 19 4357271 4357271 C T MPND Missense_Mutation p.R340W 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-A49B-01 19 49513116 49513116 G C RUVBL2 Silent p.L182L 0.07 TCGA-CN-A49B-01 19 54206032 54206032 G A MIR518B RNA 0.36 TCGA-CN-A49B-01 19 58926999 58926999 G C ZNF584 Missense_Mutation p.R93T 0.11 tolerated(0.57) benign(0.001) TCGA-CN-A49B-01 19 6001995 6001995 C T RFX2 Missense_Mutation p.V564M 0.31 deleterious(0) possibly_damaging(0.821) TCGA-CN-A49B-01 19 7987736 7987736 C T SNAPC2 3'UTR 0.23 TCGA-CN-A49B-01 1 11086848 11086848 C T MASP2 3'UTR 0.23 TCGA-CN-A49B-01 1 16258578 16258578 C T SPEN Missense_Mutation p.P1948L 0.41 probably_damaging(0.999) TCGA-CN-A49B-01 1 176668475 176668475 C T PAPPA2 Silent p.L996L 0.35 TCGA-CN-A49B-01 1 196309663 196309663 T C KCNT2 Missense_Mutation p.N531D 0.17 tolerated(0.32) possibly_damaging(0.704) TCGA-CN-A49B-01 1 209968692 209968692 C T IRF6 Missense_Mutation p.D151N 0.24 tolerated(0.39) benign(0) TCGA-CN-A49B-01 1 237777871 237777871 G A RYR2 Missense_Mutation p.E1815K 0.23 benign(0.288) TCGA-CN-A49B-01 1 24700294 24700294 C A STPG1 Missense_Mutation p.V157F 0.28 tolerated(0.28) benign(0.043) TCGA-CN-A49B-01 1 24859680 24859680 G C RCAN3 Missense_Mutation p.Q159H 0.36 tolerated(0.06) probably_damaging(0.951) TCGA-CN-A49B-01 1 26888134 26888134 G C RPS6KA1 Missense_Mutation p.E533Q 0.08 tolerated(0.21) benign(0.126) TCGA-CN-A49B-01 1 35485180 35485180 G A ZMYM6 Nonsense_Mutation p.Q68* 0.46 TCGA-CN-A49B-01 1 38158641 38158641 C T CDCA8 Silent p.L53L 0.10 TCGA-CN-A49B-01 1 74701111 74701111 G A TNNI3K Intron 0.29 TCGA-CN-A49B-01 20 25434176 25434176 C T NINL Missense_Mutation p.A1354T 0.46 tolerated(0.1) benign(0.261) TCGA-CN-A49B-01 20 36639940 36639940 A T TTI1 Missense_Mutation p.L760Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-CN-A49B-01 20 47852933 47852933 C T DDX27 Missense_Mutation p.R556C 0.18 deleterious(0) probably_damaging(1) TCGA-CN-A49B-01 20 57769098 57769098 C T ZNF831 Silent p.P1008P 0.12 TCGA-CN-A49B-01 21 31859652 31859652 C T KRTAP19-2 Missense_Mutation p.G6S 0.33 tolerated_low_confidence(1) unknown(0) TCGA-CN-A49B-01 21 46596043 46596043 G A ADARB1 Missense_Mutation p.V143I 0.53 tolerated(0.39) possibly_damaging(0.682) TCGA-CN-A49B-01 22 18570817 18570817 C G PEX26 Silent p.L298L 0.11 TCGA-CN-A49B-01 22 32871336 32871336 G T FBXO7 Intron 0.29 TCGA-CN-A49B-01 22 38336828 38336828 C T MICALL1 Silent p.D861D 0.17 TCGA-CN-A49B-01 2 113789326 113789326 C A IL36B 5'UTR 0.27 TCGA-CN-A49B-01 2 165552193 165552193 G C COBLL1 Missense_Mutation p.T608S 0.26 tolerated(0.27) benign(0.025) TCGA-CN-A49B-01 2 178084017 178084017 G A HNRNPA3 Missense_Mutation p.R376K 0.21 deleterious_low_confidence(0.04) unknown(0) TCGA-CN-A49B-01 2 179611294 179611294 C G TTN Intron 0.29 TCGA-CN-A49B-01 2 17962391 17962391 A G GEN1 Missense_Mutation p.R638G 0.18 tolerated(0.38) benign(0.003) TCGA-CN-A49B-01 2 201845969 201845969 G C FAM126B 3'UTR 0.30 TCGA-CN-A49B-01 2 207631831 207631831 A C FASTKD2 Missense_Mutation p.E138D 0.14 tolerated(0.11) benign(0.009) TCGA-CN-A49B-01 2 48809319 48809319 G A STON1-GTF2A1L Missense_Mutation p.R516H 0.05 deleterious(0) probably_damaging(1) TCGA-CN-A49B-01 2 9463337 9463337 G C ASAP2 Missense_Mutation p.E186D 0.24 tolerated(0.37) benign(0.138) TCGA-CN-A49B-01 2 9668007 9668007 G A ADAM17 Missense_Mutation p.S176L 0.41 deleterious(0.03) possibly_damaging(0.811) TCGA-CN-A49B-01 3 136708300 136708300 G - IL20RB Frame_Shift_Del p.M143Wfs*41 0.16 TCGA-CN-A49B-01 3 139085612 139085612 A G COPB2 Missense_Mutation p.M561T 0.25 deleterious(0) possibly_damaging(0.756) TCGA-CN-A49B-01 3 183976398 183976398 C G ECE2 Intron 0.21 TCGA-CN-A49B-01 3 197444966 197444966 G A KIAA0226 Missense_Mutation p.T34M 0.14 deleterious(0) probably_damaging(0.987) TCGA-CN-A49B-01 3 39230226 39230226 C T XIRP1 Silent p.T237T 0.43 TCGA-CN-A49B-01 3 44612534 44612534 C T ZKSCAN7 Silent p.F644F 0.47 TCGA-CN-A49B-01 3 47470066 47470066 C T SCAP Missense_Mutation p.R116H 0.37 deleterious(0) probably_damaging(0.999) TCGA-CN-A49B-01 4 141590935 141590935 G A TBC1D9 Silent p.L430L 0.11 TCGA-CN-A49B-01 4 153691315 153691315 C T TIGD4 Missense_Mutation p.R281Q 0.06 deleterious(0.05) probably_damaging(0.944) TCGA-CN-A49B-01 4 47514744 47514744 G A ATP10D Missense_Mutation p.E63K 0.07 tolerated(0.15) benign(0.049) TCGA-CN-A49B-01 4 77817339 77817339 T A SOWAHB Missense_Mutation p.K555M 0.29 deleterious(0) possibly_damaging(0.781) TCGA-CN-A49B-01 4 77940386 77940386 C A SEPT11 Silent p.A252A 0.27 TCGA-CN-A49B-01 5 133494030 133494030 T C SKP1 Intron 0.26 TCGA-CN-A49B-01 5 133901872 133901872 C T JADE2 Missense_Mutation p.R346W 0.34 deleterious(0) probably_damaging(0.989) TCGA-CN-A49B-01 5 140865344 140865344 C T PCDHGC4 Nonsense_Mutation p.R202* 0.11 TCGA-CN-A49B-01 5 150920153 150920153 T A FAT2 Missense_Mutation p.N3005I 0.29 probably_damaging(0.999) TCGA-CN-A49B-01 6 100006282 100006282 A T CCNC Intron 0.48 TCGA-CN-A49B-01 6 127611032 127611032 T A ECHDC1 Missense_Mutation p.K302N 0.37 tolerated(0.31) benign(0.003) TCGA-CN-A49B-01 6 144178465 144178465 C T LTV1 Silent p.D141D 0.04 TCGA-CN-A49B-01 6 158924160 158924160 G A TULP4 Silent p.L1155L 0.30 TCGA-CN-A49B-01 6 159672550 159672550 G A FNDC1 Missense_Mutation p.G1684E 0.24 deleterious(0) probably_damaging(0.977) TCGA-CN-A49B-01 6 27114996 27114996 G A HIST1H2AH Missense_Mutation p.R30Q 0.06 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-CN-A49B-01 6 43400430 43400430 T A ABCC10 Missense_Mutation p.C238S 0.05 tolerated(0.11) benign(0.021) TCGA-CN-A49B-01 6 54805489 54805489 A G FAM83B Missense_Mutation p.S574G 0.30 deleterious(0.02) benign(0.345) TCGA-CN-A49B-01 7 100084694 100084694 G A NYAP1 Missense_Mutation p.E107K 0.10 tolerated(0.26) benign(0.275) TCGA-CN-A49B-01 7 30890112 30890112 C T FAM188B Silent p.V496V 0.19 TCGA-CN-A49B-01 7 91871385 91871385 C A KRIT1 Missense_Mutation p.S22I 0.18 deleterious(0) probably_damaging(0.998) TCGA-CN-A49B-01 8 125131953 125131953 C T FER1L6 Silent p.I1832I 0.04 TCGA-CN-A49B-01 8 12957357 12957357 G A DLC1 Missense_Mutation p.S830L 0.06 tolerated(0.38) benign(0.002) TCGA-CN-A49B-01 8 134072440 134072440 C T SLA Nonsense_Mutation p.W29* 0.17 TCGA-CN-A49B-01 8 134072467 134072467 G A SLA Missense_Mutation p.P20L 0.23 tolerated_low_confidence(0.6) benign(0.01) TCGA-CN-A49B-01 8 140922441 140922441 C A TRAPPC9 Nonsense_Mutation p.E1070* 0.24 TCGA-CN-A49B-01 8 48842559 48842559 C G PRKDC Missense_Mutation p.E636Q 0.08 benign(0.209) TCGA-CN-A49B-01 8 57079259 57079259 T C PLAG1 Missense_Mutation p.E349G 0.36 tolerated(0.32) probably_damaging(0.932) TCGA-CN-A49B-01 8 68074073 68074073 C T CSPP1 Missense_Mutation p.P851S 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-CN-A49B-01 9 21187115 21187115 G A IFNA4 Missense_Mutation p.S139F 0.17 deleterious(0.02) possibly_damaging(0.683) TCGA-CN-A49B-01 9 21201479 21201479 G A IFNA7 3'UTR 0.23 TCGA-CN-A49B-01 9 33911983 33911983 C G UBE2R2 Missense_Mutation p.I128M 0.74 deleterious(0) benign(0.228) TCGA-CN-A49B-01 9 34381458 34381459 - T C9orf24 Intron 0.39 TCGA-CN-A49B-01 X 129148036 129148036 A G BCORL1 Missense_Mutation p.M430V 0.74 probably_damaging(0.977) TCGA-CN-A49B-01 X 153880469 153880469 C T CTAG2 3'UTR 0.23 TCGA-CN-A49B-01 X 44171825 44171825 A T EFHC2 Missense_Mutation p.F74I 0.42 deleterious(0) probably_damaging(0.995) TCGA-CN-A49C-01 10 12277056 12277056 C T CDC123 Nonsense_Mutation p.R167* 0.34 TCGA-CN-A49C-01 10 61412622 61412622 G A SLC16A9 Silent p.L480L 0.04 TCGA-CN-A49C-01 11 5474874 5474874 G A OR51I2 Silent p.E52E 0.67 TCGA-CN-A49C-01 11 55541562 55541562 C T OR5D13 Silent p.L217L 0.04 TCGA-CN-A49C-01 11 61183738 61183738 G A CPSF7 Silent p.P311P 0.67 TCGA-CN-A49C-01 11 62549756 62549756 C T TAF6L Missense_Mutation p.H260Y 0.41 deleterious(0) probably_damaging(0.996) TCGA-CN-A49C-01 11 64939779 64939779 C T SPDYC Silent p.T107T 0.22 TCGA-CN-A49C-01 11 71943719 71943719 C T INPPL1 Missense_Mutation p.R588W 0.13 deleterious(0) possibly_damaging(0.897) TCGA-CN-A49C-01 12 48526697 48526697 G A PFKM Missense_Mutation p.R166Q 0.20 deleterious(0) benign(0.028) TCGA-CN-A49C-01 12 48723402 48723402 C T H1FNT Missense_Mutation p.R110W 0.15 deleterious(0) probably_damaging(0.942) TCGA-CN-A49C-01 12 93162805 93162805 T G PLEKHG7 Nonsense_Mutation p.Y327* 0.35 TCGA-CN-A49C-01 13 28008981 28008981 G A GTF3A Missense_Mutation p.R228H 0.07 tolerated(0.12) benign(0.444) TCGA-CN-A49C-01 13 43358193 43358193 T C FAM216B Intron 0.08 TCGA-CN-A49C-01 14 105707730 105707730 C T BRF1 Missense_Mutation p.R189H 0.57 deleterious(0) probably_damaging(0.999) TCGA-CN-A49C-01 14 54948136 54948136 C T GMFB Missense_Mutation p.R64Q 0.12 tolerated(0.37) benign(0.061) TCGA-CN-A49C-01 14 67831619 67831619 G A EIF2S1 Missense_Mutation p.M45I 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A49C-01 14 69925126 69925135 TGCTTTTCTC - SLC39A9 Frame_Shift_Del p.L248Pfs*19 0.33 TCGA-CN-A49C-01 14 93043785 93043785 C T RIN3 Silent p.A110A 0.10 TCGA-CN-A49C-01 15 42729429 42729429 C T ZNF106 Splice_Site p.X1559_splice 0.29 TCGA-CN-A49C-01 15 82443855 82443855 C G EFTUD1 Silent p.L980L 0.45 TCGA-CN-A49C-01 16 2154548 2154548 C T PKD1 Silent p.A2704A 0.36 TCGA-CN-A49C-01 16 31144141 31144141 C T PRSS8 Missense_Mutation p.D134N 0.35 deleterious(0) probably_damaging(1) TCGA-CN-A49C-01 16 3614338 3614338 G A NLRC3 Silent p.H247H 0.14 TCGA-CN-A49C-01 16 50667411 50667411 G C NKD1 Missense_Mutation p.V378L 0.14 tolerated(0.65) benign(0.004) TCGA-CN-A49C-01 16 58312518 58312518 G A CCDC113 Missense_Mutation p.E342K 0.46 deleterious(0) probably_damaging(0.991) TCGA-CN-A49C-01 16 67315487 67315487 C T PLEKHG4 Silent p.A277A 0.43 TCGA-CN-A49C-01 17 12661572 12661572 C A MYOCD Intron 0.32 TCGA-CN-A49C-01 17 40486033 40486033 G A STAT3 Missense_Mutation p.R278C 0.38 deleterious(0) probably_damaging(0.999) TCGA-CN-A49C-01 17 54671609 54671609 G T NOG Missense_Mutation p.V9F 0.36 tolerated(0.06) benign(0.008) TCGA-CN-A49C-01 17 56277000 56277000 G - EPX Frame_Shift_Del p.V462Wfs*68 0.28 TCGA-CN-A49C-01 17 71389822 71389822 G A SDK2 Missense_Mutation p.R1259C 0.18 tolerated(0.09) possibly_damaging(0.893) TCGA-CN-A49C-01 18 8379271 8379271 G A PTPRM Missense_Mutation p.R1240H 0.18 tolerated(0.06) probably_damaging(1) TCGA-CN-A49C-01 19 3281254 3281254 C T CELF5 Missense_Mutation p.R221W 0.06 deleterious(0) probably_damaging(0.982) TCGA-CN-A49C-01 19 35451806 35451806 C T ZNF792 Silent p.V42V 0.29 TCGA-CN-A49C-01 19 51410128 51410128 T C KLK4 3'UTR 0.08 TCGA-CN-A49C-01 19 54313268 54313268 C T NLRP12 Missense_Mutation p.A549T 0.42 deleterious(0) benign(0.124) TCGA-CN-A49C-01 19 54483236 54483236 C T CACNG8 Silent p.G161G 0.16 TCGA-CN-A49C-01 19 54496071 54496071 G A CACNG6 5'UTR 0.38 TCGA-CN-A49C-01 1 114193780 114193780 C T MAGI3 Nonsense_Mutation p.R798* 0.12 TCGA-CN-A49C-01 1 114224924 114224924 G A MAGI3 Intron 0.35 TCGA-CN-A49C-01 1 161680622 161680622 A G FCRLA Missense_Mutation p.D74G 0.43 tolerated(0.05) possibly_damaging(0.698) TCGA-CN-A49C-01 1 169500137 169500137 C T F5 Missense_Mutation p.A1699T 0.14 deleterious(0.03) possibly_damaging(0.837) TCGA-CN-A49C-01 20 62518930 62518930 C T TPD52L2 Missense_Mutation p.R173C 0.07 deleterious(0.01) probably_damaging(1) TCGA-CN-A49C-01 22 22869676 22869676 C G ZNF280A Silent p.V93V 0.31 TCGA-CN-A49C-01 22 50682457 50682457 C A TUBGCP6 Silent p.P144P 0.17 TCGA-CN-A49C-01 2 116548892 116548892 G C DPP10 Missense_Mutation p.D558H 0.43 tolerated(0.1) possibly_damaging(0.881) TCGA-CN-A49C-01 2 189932828 189932828 A T COL5A2 Silent p.G438G 0.49 TCGA-CN-A49C-01 2 198949350 198949350 G A PLCL1 Missense_Mutation p.G370E 0.05 deleterious(0) probably_damaging(0.992) TCGA-CN-A49C-01 2 204305714 204305714 A G RAPH1 Silent p.C733C 0.09 TCGA-CN-A49C-01 3 193332546 193332546 G A OPA1 Missense_Mutation p.G23R 0.05 deleterious_low_confidence(0.01) benign(0.183) TCGA-CN-A49C-01 3 89390120 89390120 G T EPHA3 Missense_Mutation p.C290F 0.06 deleterious(0) possibly_damaging(0.728) TCGA-CN-A49C-01 3 98538221 98538221 C T DCBLD2 Silent p.A304A 0.12 TCGA-CN-A49C-01 4 103236897 103236897 C T SLC39A8 Missense_Mutation p.V104I 0.13 tolerated(0.96) benign(0.02) TCGA-CN-A49C-01 4 1746555 1746557 AGA - TACC3 In_Frame_Del p.K817del 0.10 TCGA-CN-A49C-01 5 128430636 128430636 C T ISOC1 Silent p.G59G 0.43 TCGA-CN-A49C-01 5 169111349 169111349 C T DOCK2 Silent p.V252V 0.13 TCGA-CN-A49C-01 5 179004076 179004076 G C RUFY1 Missense_Mutation p.V277L 0.33 deleterious(0.01) possibly_damaging(0.821) TCGA-CN-A49C-01 5 67591132 67591134 GAC - PIK3R1 In_Frame_Del p.T576del 0.07 TCGA-CN-A49C-01 6 28333342 28333342 C T ZKSCAN3 Silent p.G299G 0.06 TCGA-CN-A49C-01 6 33643520 33643520 C T ITPR3 Missense_Mutation p.R1057C 0.09 deleterious(0) probably_damaging(0.931) TCGA-CN-A49C-01 6 44218816 44218816 G A HSP90AB1 Missense_Mutation p.R330K 0.40 tolerated(0.57) benign(0.188) TCGA-CN-A49C-01 6 78172530 78172530 C T HTR1B Silent p.S197S 0.05 TCGA-CN-A49C-01 6 99729258 99729258 C A FAXC Missense_Mutation p.D338Y 0.37 tolerated_low_confidence(0.15) benign(0.296) TCGA-CN-A49C-01 7 100061023 100061023 G A C7orf61 Missense_Mutation p.S117F 0.42 deleterious(0) probably_damaging(0.939) TCGA-CN-A49C-01 7 100279950 100279950 A G GIGYF1 Missense_Mutation p.L919P 0.38 deleterious(0.02) probably_damaging(0.992) TCGA-CN-A49C-01 7 128484980 128484982 ACC T FLNC Frame_Shift_Del p.D1154Vfs*18 0.48 TCGA-CN-A49C-01 7 88963928 88963928 T C ZNF804B Silent p.D544D 0.15 TCGA-CN-A49C-01 8 120847202 120847202 G A DSCC1 Silent p.L371L 0.27 TCGA-CN-A49C-01 8 24254856 24254856 G A ADAMDEC1 Missense_Mutation p.V172I 0.31 tolerated(0.21) benign(0.06) TCGA-CN-A49C-01 9 37428545 37428545 G A GRHPR Missense_Mutation p.G157S 0.09 deleterious(0.02) probably_damaging(0.993) TCGA-CN-A49C-01 9 5969242 5969242 C T KIAA2026 Missense_Mutation p.R330H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A49C-01 X 101858254 101858254 A G ARMCX5 Silent p.Q395Q 0.06 TCGA-CN-A49C-01 X 119005206 119005206 G A RNF113A Missense_Mutation p.T124I 0.03 deleterious(0) possibly_damaging(0.901) TCGA-CN-A49C-01 X 130410972 130410972 C T IGSF1 Missense_Mutation p.R855Q 0.14 tolerated(0.1) probably_damaging(0.992) TCGA-CN-A49C-01 X 155004050 155004050 C T SPRY3 Missense_Mutation p.R173C 0.07 deleterious(0) probably_damaging(0.985) TCGA-CN-A49C-01 X 57146462 57146462 C T SPIN2B Missense_Mutation p.E201K 0.61 tolerated(0.67) benign(0.02) TCGA-CN-A63T-01 10 101716099 101716099 C A DNMBP Nonsense_Mutation p.E378* 0.22 TCGA-CN-A63T-01 10 102050196 102050196 G - PKD2L1 Frame_Shift_Del p.R697Efs*28 0.16 TCGA-CN-A63T-01 10 104831530 104831530 G C CNNM2 Splice_Site p.X723_splice 0.26 TCGA-CN-A63T-01 10 112266724 112266724 A G DUSP5 Missense_Mutation p.Y187C 0.26 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 10 12292425 12292425 G C CDC123 3'UTR 0.25 TCGA-CN-A63T-01 10 135095776 135095776 C A TUBGCP2 Missense_Mutation p.G815V 0.31 deleterious(0.02) possibly_damaging(0.543) TCGA-CN-A63T-01 10 15655689 15655689 T A ITGA8 Missense_Mutation p.Q508L 0.18 tolerated(0.36) benign(0.008) TCGA-CN-A63T-01 10 16859111 16859111 G C RSU1 5'UTR 0.16 TCGA-CN-A63T-01 10 21108395 21108395 C T NEBL Silent p.P671P 0.38 TCGA-CN-A63T-01 10 22055238 22055238 C A DNAJC1 Missense_Mutation p.V367L 0.35 deleterious(0) probably_damaging(0.997) TCGA-CN-A63T-01 10 429979 429979 C T DIP2C Missense_Mutation p.G622S 0.30 deleterious(0) possibly_damaging(0.867) TCGA-CN-A63T-01 10 429991 429991 T A DIP2C Missense_Mutation p.I618L 0.24 tolerated(1) benign(0.001) TCGA-CN-A63T-01 10 50902583 50902583 G T C10orf53 Intron 0.32 TCGA-CN-A63T-01 10 55944968 55944968 G T PCDH15 Missense_Mutation p.Q456K 0.24 tolerated(1) benign(0.044) TCGA-CN-A63T-01 10 70164458 70164458 T A RUFY2 Missense_Mutation p.M85L 0.22 tolerated(0.43) benign(0.146) TCGA-CN-A63T-01 10 97769595 97769595 A G CC2D2B Missense_Mutation p.K12R 0.24 tolerated(0.31) benign(0.031) TCGA-CN-A63T-01 11 100126551 100126551 C T CNTN5 Silent p.L689L 0.09 TCGA-CN-A63T-01 11 106680815 106680815 G T GUCY1A2 Silent p.A532A 0.13 TCGA-CN-A63T-01 11 125791159 125791159 T C DDX25 Silent p.Y425Y 0.46 TCGA-CN-A63T-01 11 133801614 133801614 G T IGSF9B Missense_Mutation p.T396N 0.37 deleterious(0) probably_damaging(0.983) TCGA-CN-A63T-01 11 22257772 22257772 G T ANO5 Nonsense_Mutation p.E238* 0.17 TCGA-CN-A63T-01 11 4936857 4936857 C T OR51G2 Missense_Mutation p.V13I 0.52 tolerated(0.35) unknown(0) TCGA-CN-A63T-01 11 55063090 55063090 T A TRIM51HP RNA 0.15 TCGA-CN-A63T-01 11 55110791 55110791 G T OR4A16 Nonsense_Mutation p.G39* 0.31 TCGA-CN-A63T-01 11 55433060 55433060 T A OR4C6 Missense_Mutation p.C140S 0.11 tolerated_low_confidence(0.42) benign(0.068) TCGA-CN-A63T-01 11 55681847 55681847 A C OR5W2 Missense_Mutation p.L71R 0.35 deleterious(0) possibly_damaging(0.828) TCGA-CN-A63T-01 11 55798181 55798181 G C OR5AS1 Missense_Mutation p.G96A 0.25 tolerated(0.42) benign(0.179) TCGA-CN-A63T-01 11 56019812 56019812 G T OR5T3 Missense_Mutation p.G46V 0.07 deleterious(0) probably_damaging(0.988) TCGA-CN-A63T-01 11 56127818 56127818 G C OR8J1 Silent p.L32L 0.12 TCGA-CN-A63T-01 11 56185277 56185277 C A OR5R1 Silent p.L144L 0.14 TCGA-CN-A63T-01 11 56310049 56310049 A C OR5M11 Missense_Mutation p.S229A 0.18 deleterious(0) probably_damaging(0.912) TCGA-CN-A63T-01 11 57076224 57076224 C A TNKS1BP1 Nonsense_Mutation p.E1321* 0.14 TCGA-CN-A63T-01 11 57563202 57563202 G T CTNND1 Splice_Site p.X140_splice 0.19 TCGA-CN-A63T-01 11 58189874 58189874 G T OR5B2 Silent p.V287V 0.27 TCGA-CN-A63T-01 11 66262881 66262881 A T DPP3 Missense_Mutation p.S500C 0.25 tolerated(0.06) possibly_damaging(0.759) TCGA-CN-A63T-01 11 92533682 92533682 C T FAT3 Silent p.Y2501Y 0.21 TCGA-CN-A63T-01 12 103352481 103352481 G C ASCL1 Missense_Mutation p.K153N 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-A63T-01 12 12337019 12337019 C A LRP6 Missense_Mutation p.G291W 0.30 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 12 132445398 132445398 C T EP400 Silent p.S78S 0.16 TCGA-CN-A63T-01 12 4919582 4919582 G C KCNA6 Missense_Mutation p.Q125H 0.24 deleterious(0) probably_damaging(0.982) TCGA-CN-A63T-01 12 52797605 52797605 G T KRT82 Missense_Mutation p.P167H 0.25 deleterious(0.01) probably_damaging(1) TCGA-CN-A63T-01 12 54925051 54925051 G A NCKAP1L Silent p.R838R 0.25 TCGA-CN-A63T-01 12 81110751 81110751 C G MYF5 5'UTR 0.26 TCGA-CN-A63T-01 12 81112190 81112190 C A MYF5 Silent p.I185I 0.19 TCGA-CN-A63T-01 13 32910544 32910544 G A BRCA2 Silent p.Q684Q 0.43 TCGA-CN-A63T-01 13 37679084 37679084 A G CSNK1A1L Missense_Mutation p.C104R 0.42 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CN-A63T-01 13 78167687 78167687 C A SCEL Nonsense_Mutation p.S244* 0.11 TCGA-CN-A63T-01 14 102453025 102453025 G A DYNC1H1 Silent p.A821A 0.13 TCGA-CN-A63T-01 14 20836999 20836999 C T TEP1 Silent p.K2573K 0.29 TCGA-CN-A63T-01 14 22392797 22392797 C T TRAV14DV4 Missense_Mutation p.S107L 0.30 TCGA-CN-A63T-01 14 22466319 22466319 C T TRAV17 Silent p.V83V 0.23 TCGA-CN-A63T-01 14 24805377 24805377 T G RIPK3 3'UTR 0.22 TCGA-CN-A63T-01 14 33684485 33684485 C G NPAS3 Missense_Mutation p.L80V 0.28 deleterious(0.03) benign(0.364) TCGA-CN-A63T-01 14 69704350 69704350 A T EXD2 Missense_Mutation p.N451Y 0.28 deleterious(0) possibly_damaging(0.906) TCGA-CN-A63T-01 14 70238159 70238159 C T SRSF5 Missense_Mutation p.S267L 0.28 deleterious_low_confidence(0.03) benign(0.184) TCGA-CN-A63T-01 14 81837512 81837512 G A STON2 Missense_Mutation p.P131S 0.07 tolerated_low_confidence(0.14) benign(0.133) TCGA-CN-A63T-01 14 86089896 86089896 C A FLRT2 3'UTR 0.23 TCGA-CN-A63T-01 14 91787538 91787538 C T CCDC88C Missense_Mutation p.A485T 0.26 tolerated(0.29) benign(0.127) TCGA-CN-A63T-01 14 95574010 95574010 C G DICER1 Missense_Mutation p.K913N 0.31 tolerated(0.15) benign(0.289) TCGA-CN-A63T-01 15 23312182 23312182 A T HERC2P2 RNA 0.24 TCGA-CN-A63T-01 15 25483216 25483216 A T SNORD115-37 3'Flank 0.16 TCGA-CN-A63T-01 15 25959061 25959061 C A ATP10A Missense_Mutation p.A702S 0.24 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 15 52188669 52188669 A T TMOD3 Silent p.T227T 0.13 TCGA-CN-A63T-01 15 53889435 53889435 C A WDR72 Missense_Mutation p.V997F 0.35 deleterious(0) probably_damaging(0.98) TCGA-CN-A63T-01 15 55647509 55647509 G A PIGB Missense_Mutation p.S515N 0.27 tolerated(1) benign(0) TCGA-CN-A63T-01 15 75641258 75641258 C - NEIL1 Frame_Shift_Del p.E6Sfs*9 0.26 TCGA-CN-A63T-01 15 90617403 90617403 A G ZNF710 Missense_Mutation p.H569R 0.12 deleterious(0) probably_damaging(0.95) TCGA-CN-A63T-01 16 1706279 1706279 C T CRAMP1L Silent p.D507D 0.24 TCGA-CN-A63T-01 16 31477389 31477389 C G ARMC5 Intron 0.32 TCGA-CN-A63T-01 16 449681 449681 G A NME4 Missense_Mutation p.D128N 0.13 tolerated(1) benign(0.057) TCGA-CN-A63T-01 16 53967915 53967915 G A FTO Missense_Mutation p.E420K 0.20 tolerated(0.4) benign(0.032) TCGA-CN-A63T-01 16 57552018 57552018 G T CCDC102A Missense_Mutation p.L404M 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-CN-A63T-01 16 64981443 64981443 A T CDH11 3'UTR 0.28 TCGA-CN-A63T-01 16 67188853 67188853 G A TRADD Missense_Mutation p.P213L 0.17 tolerated(0.25) probably_damaging(0.998) TCGA-CN-A63T-01 16 67645173 67645173 C A CTCF Silent p.G146G 0.33 TCGA-CN-A63T-01 16 69349973 69349973 G T VPS4A Silent p.A28A 0.29 TCGA-CN-A63T-01 16 7645629 7645629 G C RBFOX1 Missense_Mutation p.G203R 0.10 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 17 19844263 19844263 G A AKAP10 Silent p.T374T 0.33 TCGA-CN-A63T-01 17 27421764 27421764 G A MYO18A Silent p.A1538A 0.17 TCGA-CN-A63T-01 17 29185322 29185322 C T ATAD5 Silent p.S979S 0.11 TCGA-CN-A63T-01 17 32583865 32583865 A T CCL2 3'UTR 0.12 TCGA-CN-A63T-01 17 32687577 32687577 C A CCL1 3'UTR 0.10 TCGA-CN-A63T-01 17 34073029 34073029 G A GAS2L2 Missense_Mutation p.P496L 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-A63T-01 17 35346000 35346000 C T AATF Missense_Mutation p.A377V 0.12 deleterious(0.03) benign(0.314) TCGA-CN-A63T-01 17 44061064 44061064 C G MAPT Silent p.P298P 0.12 TCGA-CN-A63T-01 17 45673780 45673780 C T NPEPPS Silent p.T496T 0.44 TCGA-CN-A63T-01 17 47302047 47302047 G A PHOSPHO1 Missense_Mutation p.S147F 0.27 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 17 6683440 6683440 T C FBXO39 Missense_Mutation p.F85L 0.31 tolerated(0.21) probably_damaging(0.997) TCGA-CN-A63T-01 17 73089780 73089780 C - SLC16A5 Frame_Shift_Del p.L17Cfs*6 0.23 TCGA-CN-A63T-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.49 deleterious(0) probably_damaging(0.997) TCGA-CN-A63T-01 17 76082941 76082941 G A TNRC6C Missense_Mutation p.R1187H 0.08 deleterious(0) probably_damaging(0.998) TCGA-CN-A63T-01 17 79418800 79418800 G A RP11-1055B8.7 Silent p.A1361A 0.12 TCGA-CN-A63T-01 17 79994505 79994505 G A DCXR Silent p.G121G 0.23 TCGA-CN-A63T-01 19 18420673 18420673 T C LSM4 Splice_Site p.X49_splice 0.21 TCGA-CN-A63T-01 19 18888322 18888322 C T CRTC1 3'UTR 0.35 TCGA-CN-A63T-01 19 22364066 22364066 G T ZNF676 Nonsense_Mutation p.C151* 0.26 TCGA-CN-A63T-01 19 36215989 36215989 G A KMT2B Splice_Site p.X1176_splice 0.20 TCGA-CN-A63T-01 19 36673780 36673780 T A ZNF565 Missense_Mutation p.Y363F 0.20 tolerated(0.13) probably_damaging(0.998) TCGA-CN-A63T-01 19 38973678 38973678 C T RYR1 Silent p.N1544N 0.31 TCGA-CN-A63T-01 19 41131858 41131858 G C LTBP4 Missense_Mutation p.C1376S 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-CN-A63T-01 19 42353199 42353199 C A DMRTC2 Silent p.G210G 0.25 TCGA-CN-A63T-01 19 42813749 42813749 G T PRR19 Nonsense_Mutation p.G5* 0.21 TCGA-CN-A63T-01 19 43015732 43015732 G T CEACAM1 Missense_Mutation p.N475K 0.17 tolerated(0.05) possibly_damaging(0.727) TCGA-CN-A63T-01 19 43523066 43523066 T C PSG11 Missense_Mutation p.M189V 0.27 tolerated(0.44) benign(0.006) TCGA-CN-A63T-01 19 44377279 44377279 C T ZNF404 Missense_Mutation p.A363T 0.14 tolerated(0.3) benign(0.028) TCGA-CN-A63T-01 19 52954806 52954806 C T ZNF578 5'Flank 0.11 TCGA-CN-A63T-01 19 53086565 53086565 T A ZNF701 Missense_Mutation p.V484D 0.33 tolerated(0.06) benign(0.229) TCGA-CN-A63T-01 19 55098523 55098523 G T LILRA2 Silent p.T434T 0.16 TCGA-CN-A63T-01 19 55222134 55222134 A T AC098784.2 3'Flank 0.20 TCGA-CN-A63T-01 19 55493809 55493809 G A NLRP2 Missense_Mutation p.R248K 0.23 tolerated(1) benign(0.03) TCGA-CN-A63T-01 19 55493823 55493823 C A NLRP2 Missense_Mutation p.L253M 0.26 tolerated(0.99) benign(0.079) TCGA-CN-A63T-01 19 55493831 55493831 G C NLRP2 Silent p.P255P 0.27 TCGA-CN-A63T-01 19 56973797 56973797 G T ZNF667 Intron 0.21 TCGA-CN-A63T-01 19 58421249 58421249 C G ZNF417 Missense_Mutation p.A133P 0.20 deleterious(0.05) benign(0.009) TCGA-CN-A63T-01 19 6586078 6586078 G T CD70 Silent p.R179R 0.15 TCGA-CN-A63T-01 19 8155123 8155124 CT - FBN3 Frame_Shift_Del p.S2015Ffs*7 0.35 TCGA-CN-A63T-01 1 13001279 13001279 A T PRAMEF6 Missense_Mutation p.V135E 0.10 tolerated(0.47) benign(0.067) TCGA-CN-A63T-01 1 145368485 145368485 A T NBPF10 Missense_Mutation p.Q3488L 0.14 probably_damaging(0.927) TCGA-CN-A63T-01 1 152083180 152083180 T A TCHH Missense_Mutation p.E838V 0.27 unknown(0) TCGA-CN-A63T-01 1 155319221 155319221 T C ASH1L Missense_Mutation p.D2484G 0.37 deleterious_low_confidence(0.03) benign(0.109) TCGA-CN-A63T-01 1 155630373 155630373 G A YY1AP1 Missense_Mutation p.P581L 0.26 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-CN-A63T-01 1 158390393 158390393 C A OR10K2 Missense_Mutation p.Q88H 0.17 tolerated(0.25) benign(0.021) TCGA-CN-A63T-01 1 158669774 158669774 C A OR6K2 Silent p.V223V 0.28 TCGA-CN-A63T-01 1 16458622 16458622 C A EPHA2 Missense_Mutation p.K754N 0.25 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 1 175365789 175365789 C G TNR Missense_Mutation p.W377C 0.21 tolerated(0.21) possibly_damaging(0.755) TCGA-CN-A63T-01 1 175372683 175372683 C T TNR Missense_Mutation p.C190Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-A63T-01 1 181479697 181479697 G A CACNA1E Silent p.K117K 0.20 TCGA-CN-A63T-01 1 182025377 182025377 C A ZNF648 3'UTR 0.22 TCGA-CN-A63T-01 1 197111913 197111913 C A ASPM Missense_Mutation p.R490L 0.13 deleterious(0) possibly_damaging(0.759) TCGA-CN-A63T-01 1 203188951 203188951 C T CHIT1 Silent p.Q252Q 0.07 TCGA-CN-A63T-01 1 207222565 207222565 G A YOD1 Silent p.L283L 0.15 TCGA-CN-A63T-01 1 207890873 207890873 T C CR1L Silent p.D493D 0.13 TCGA-CN-A63T-01 1 215822045 215822045 T C USH2A Missense_Mutation p.I4803V 0.14 benign(0.002) TCGA-CN-A63T-01 1 222832074 222832074 C A MIA3 Missense_Mutation p.Q1540K 0.16 deleterious(0.02) benign(0.043) TCGA-CN-A63T-01 1 237850782 237850782 C T RYR2 Silent p.V3015V 0.40 TCGA-CN-A63T-01 1 248344017 248344017 C T OR2M2 Missense_Mutation p.H244Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-CN-A63T-01 1 248436359 248436359 G T OR2T33 Missense_Mutation p.A253D 0.19 deleterious(0) possibly_damaging(0.892) TCGA-CN-A63T-01 1 33059310 33059310 T A ZBTB8A Missense_Mutation p.Y260N 0.27 benign(0.221) TCGA-CN-A63T-01 1 36499931 36499931 A G AGO3 Missense_Mutation p.Q583R 0.19 tolerated(0.89) benign(0.158) TCGA-CN-A63T-01 1 37285383 37285383 A G GRIK3 Silent p.T609T 0.17 TCGA-CN-A63T-01 1 52344058 52344058 C G NRD1 Missense_Mutation p.R77P 0.23 tolerated_low_confidence(0.21) benign(0) TCGA-CN-A63T-01 1 66102523 66102523 G T LEPR Missense_Mutation p.C1108F 0.26 tolerated(0.51) benign(0.304) TCGA-CN-A63T-01 1 67101628 67101628 A C SGIP1 Missense_Mutation p.Q34P 0.27 tolerated_low_confidence(0.44) benign(0.153) TCGA-CN-A63T-01 1 72748143 72748143 C A NEGR1 Missense_Mutation p.C12F 0.22 tolerated(0.47) benign(0.202) TCGA-CN-A63T-01 1 74621485 74621485 C G LRRIQ3 Silent p.L213L 0.12 TCGA-CN-A63T-01 1 86048138 86048138 A C CYR61 Missense_Mutation p.Q225P 0.19 tolerated(0.29) benign(0.001) TCGA-CN-A63T-01 1 92459807 92459807 C A BRDT Silent p.P761P 0.15 TCGA-CN-A63T-01 1 94481338 94481338 G C ABCA4 Missense_Mutation p.P1757A 0.47 tolerated(0.18) benign(0.012) TCGA-CN-A63T-01 20 15866440 15866440 A C MACROD2 Missense_Mutation p.E253D 0.19 tolerated(1) benign(0) TCGA-CN-A63T-01 20 20601122 20601122 C G RALGAPA2 Missense_Mutation p.E462D 0.18 tolerated(0.2) benign(0.003) TCGA-CN-A63T-01 20 23860348 23860348 C G CST5 5'UTR 0.31 TCGA-CN-A63T-01 20 2638813 2638813 G A NOP56 Missense_Mutation p.R553K 0.19 tolerated_low_confidence(0.62) benign(0) TCGA-CN-A63T-01 20 33438671 33438671 C G GGT7 Intron 0.42 TCGA-CN-A63T-01 20 47839824 47839824 G A DDX27 Missense_Mutation p.G138E 0.31 tolerated(0.77) benign(0.004) TCGA-CN-A63T-01 20 56227349 56227349 G - PMEPA1 Frame_Shift_Del p.S209Afs*61 0.29 TCGA-CN-A63T-01 20 58645071 58645071 C A C20orf197 Missense_Mutation p.D14E 0.32 tolerated_low_confidence(0.77) possibly_damaging(0.753) TCGA-CN-A63T-01 21 19653540 19653540 T A TMPRSS15 Splice_Site p.X829_splice 0.34 TCGA-CN-A63T-01 21 31812721 31812721 T C KRTAP15-1 Missense_Mutation p.Y26H 0.19 deleterious(0.02) probably_damaging(0.979) TCGA-CN-A63T-01 22 17119488 17119488 G C TPTEP1 RNA 0.21 TCGA-CN-A63T-01 22 25024802 25024802 A T GGT1 Missense_Mutation p.Y569F 0.40 tolerated(0.21) benign(0.179) TCGA-CN-A63T-01 22 39918236 39918236 C A ATF4 Missense_Mutation p.L229M 0.20 tolerated(0.14) benign(0.352) TCGA-CN-A63T-01 22 44282180 44282180 T C PNPLA5 Intron 0.26 TCGA-CN-A63T-01 22 50438984 50438984 G A IL17REL Missense_Mutation p.A86V 0.24 deleterious(0) probably_damaging(0.995) TCGA-CN-A63T-01 2 100210265 100210265 C T AFF3 Missense_Mutation p.V645I 0.11 tolerated(0.28) benign(0.002) TCGA-CN-A63T-01 2 109492729 109492729 T C CCDC138 3'UTR 0.38 TCGA-CN-A63T-01 2 141294147 141294147 T C LRP1B Intron 0.24 TCGA-CN-A63T-01 2 150305596 150305596 C A LYPD6 Missense_Mutation p.T51N 0.15 deleterious(0) probably_damaging(0.952) TCGA-CN-A63T-01 2 150305597 150305597 C G LYPD6 Silent p.T51T 0.15 TCGA-CN-A63T-01 2 152276866 152276866 A G RIF1 Silent p.A222A 0.20 TCGA-CN-A63T-01 2 166229801 166229801 A G SCN2A Missense_Mutation p.R1306G 0.17 deleterious(0) probably_damaging(0.999) TCGA-CN-A63T-01 2 170070338 170070338 C A LRP2 Missense_Mutation p.V1957L 0.20 benign(0.234) TCGA-CN-A63T-01 2 201460033 201460033 G A AOX1 Missense_Mutation p.G48S 0.16 deleterious(0.03) possibly_damaging(0.802) TCGA-CN-A63T-01 2 201683058 201683058 G A BZW1 Missense_Mutation p.R286H 0.24 deleterious(0) possibly_damaging(0.628) TCGA-CN-A63T-01 2 202901144 202901144 G C FZD7 3'UTR 0.24 TCGA-CN-A63T-01 2 219892334 219892334 G C CCDC108 Intron 0.06 TCGA-CN-A63T-01 2 227942649 227942649 G T COL4A4 Missense_Mutation p.P650T 0.12 probably_damaging(0.975) TCGA-CN-A63T-01 2 227983388 227983388 T C COL4A4 Silent p.R154R 0.21 TCGA-CN-A63T-01 2 228141120 228141120 T G COL4A3 Missense_Mutation p.S649R 0.12 unknown(0) TCGA-CN-A63T-01 2 232392963 232392963 G C NMUR1 Missense_Mutation p.R257G 0.27 deleterious(0.01) possibly_damaging(0.848) TCGA-CN-A63T-01 2 233322576 233322576 G T ALPI Missense_Mutation p.M285I 0.27 deleterious(0.04) benign(0.103) TCGA-CN-A63T-01 2 235951012 235951012 G T SH3BP4 Missense_Mutation p.R533S 0.27 deleterious(0.01) benign(0.097) TCGA-CN-A63T-01 2 235951209 235951209 C A SH3BP4 Missense_Mutation p.A599D 0.20 tolerated(0.61) benign(0.06) TCGA-CN-A63T-01 2 242072400 242072400 C A PASK Missense_Mutation p.R451L 0.23 tolerated(0.3) benign(0.002) TCGA-CN-A63T-01 2 243056831 243056831 A G AC093642.5 RNA 0.32 TCGA-CN-A63T-01 2 30454562 30454562 T G LBH 5'UTR 0.16 TCGA-CN-A63T-01 2 44065846 44065846 T A ABCG5 5'UTR 0.19 TCGA-CN-A63T-01 2 50280582 50280582 C T NRXN1 Missense_Mutation p.A1359T 0.32 tolerated(0.37) benign(0.008) TCGA-CN-A63T-01 2 73675171 73675171 A C ALMS1 Missense_Mutation p.D505A 0.27 probably_damaging(0.983) TCGA-CN-A63T-01 2 75720460 75720460 C A EVA1A Missense_Mutation p.A121S 0.17 deleterious(0) probably_damaging(0.999) TCGA-CN-A63T-01 2 80835392 80835392 C A CTNNA2 Missense_Mutation p.S793R 0.14 deleterious(0) probably_damaging(0.94) TCGA-CN-A63T-01 2 98920175 98920175 C A VWA3B Missense_Mutation p.P1144H 0.09 deleterious(0.02) probably_damaging(0.91) TCGA-CN-A63T-01 2 99454586 99454586 G C KIAA1211L Missense_Mutation p.L79V 0.23 tolerated(0.05) possibly_damaging(0.567) TCGA-CN-A63T-01 3 102196375 102196377 TCT - ZPLD1 In_Frame_Del p.L406del 0.15 TCGA-CN-A63T-01 3 109049318 109049318 T C DPPA4 Intron 0.27 TCGA-CN-A63T-01 3 142278180 142278180 T A ATR Missense_Mutation p.S549C 0.40 deleterious_low_confidence(0.04) benign(0.002) TCGA-CN-A63T-01 3 1425006 1425006 C G CNTN6 Missense_Mutation p.L811V 0.39 tolerated(0.2) benign(0.001) TCGA-CN-A63T-01 3 148599396 148599396 G A CPA3 Missense_Mutation p.G222R 0.21 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 3 160137291 160137291 A - SMC4 Frame_Shift_Del p.K608Nfs*15 0.22 TCGA-CN-A63T-01 3 17052278 17052278 T A PLCL2 Missense_Mutation p.N354K 0.29 tolerated(0.2) benign(0.081) TCGA-CN-A63T-01 3 186024695 186024695 G A DGKG Missense_Mutation p.H47Y 0.47 deleterious(0.05) benign(0.065) TCGA-CN-A63T-01 3 186839064 186839064 T A RPL39L Missense_Mutation p.I9F 0.18 deleterious(0.02) possibly_damaging(0.575) TCGA-CN-A63T-01 3 193007777 193007777 G A ATP13A5 Silent p.L974L 0.51 TCGA-CN-A63T-01 3 195384946 195384946 C T AC069513.4 5'Flank 0.30 TCGA-CN-A63T-01 3 39156169 39156169 G T TTC21A Missense_Mutation p.V218F 0.06 deleterious(0) possibly_damaging(0.619) TCGA-CN-A63T-01 3 42906309 42906309 C G ACKR2 Silent p.S105S 0.32 TCGA-CN-A63T-01 3 49455267 49455267 C G AMT Missense_Mutation p.M339I 0.31 tolerated(0.18) benign(0) TCGA-CN-A63T-01 3 65342361 65342361 G A MAGI1 Missense_Mutation p.R1361C 0.28 deleterious(0.01) unknown(0) TCGA-CN-A63T-01 3 69928280 69928280 C T MITF Intron 0.42 TCGA-CN-A63T-01 3 74420439 74420439 G C CNTN3 Missense_Mutation p.S189C 0.10 deleterious(0.01) possibly_damaging(0.656) TCGA-CN-A63T-01 4 111781783 111781783 G A MIR297 RNA 0.29 TCGA-CN-A63T-01 4 114254292 114254292 G T ANK2 Missense_Mutation p.D1103Y 0.28 probably_damaging(0.996) TCGA-CN-A63T-01 4 119951432 119951432 G C SYNPO2 Missense_Mutation p.R501T 0.28 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 4 128938657 128938657 G A C4orf29 Splice_Site p.X203_splice 0.27 TCGA-CN-A63T-01 4 129783436 129783436 G T JADE1 Intron 0.27 TCGA-CN-A63T-01 4 149002463 149002463 C T NR3C2 3'UTR 0.16 TCGA-CN-A63T-01 4 155461982 155461982 A C PLRG1 Missense_Mutation p.C264W 0.14 deleterious(0) probably_damaging(0.991) TCGA-CN-A63T-01 4 156643193 156643193 C T GUCY1A3 Nonsense_Mutation p.R574* 0.10 TCGA-CN-A63T-01 4 169157461 169157461 C A DDX60 Missense_Mutation p.G1492V 0.20 deleterious(0) possibly_damaging(0.882) TCGA-CN-A63T-01 4 177632758 177632758 G T VEGFC Missense_Mutation p.T200K 0.22 deleterious(0.01) possibly_damaging(0.873) TCGA-CN-A63T-01 4 25677927 25677927 G T SLC34A2 Silent p.T543T 0.23 TCGA-CN-A63T-01 4 30723480 30723480 C A PCDH7 Missense_Mutation p.P146T 0.25 tolerated(0.57) possibly_damaging(0.882) TCGA-CN-A63T-01 4 46312206 46312206 A T GABRA2 Silent p.P181P 0.09 TCGA-CN-A63T-01 4 47605460 47605460 A G CORIN Silent p.P922P 0.35 TCGA-CN-A63T-01 4 62935916 62935916 G T LPHN3 Missense_Mutation p.G1234C 0.33 deleterious(0.05) probably_damaging(0.939) TCGA-CN-A63T-01 4 65275084 65275084 G A TECRL 5'UTR 0.27 TCGA-CN-A63T-01 4 69795751 69795751 A C UGT2A3 Missense_Mutation p.L455R 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-CN-A63T-01 4 71024146 71024146 C A C4orf40 Silent p.V59V 0.31 TCGA-CN-A63T-01 4 73181646 73181646 G T ADAMTS3 Missense_Mutation p.P510T 0.23 deleterious(0.02) possibly_damaging(0.77) TCGA-CN-A63T-01 4 887730 887730 C A GAK Missense_Mutation p.R270L 0.25 deleterious(0) probably_damaging(0.983) TCGA-CN-A63T-01 4 96036835 96036835 G T BMPR1B Splice_Site p.X113_splice 0.25 TCGA-CN-A63T-01 5 101572510 101572510 T C SLCO4C1 3'UTR 0.14 TCGA-CN-A63T-01 5 108436099 108436099 G T FER Missense_Mutation p.G643C 0.18 deleterious(0) probably_damaging(0.998) TCGA-CN-A63T-01 5 112676270 112676270 C T MCC Silent p.Q191Q 0.24 TCGA-CN-A63T-01 5 11346484 11346485 - T CTNND2 Frame_Shift_Ins p.R543Kfs*27 0.16 TCGA-CN-A63T-01 5 130841138 130841141 CATA ATT RAPGEF6 Frame_Shift_Del p.F339Lfs*25 0.12 TCGA-CN-A63T-01 5 140263782 140263782 G C PCDHA13 Silent p.P643P 0.27 TCGA-CN-A63T-01 5 14716842 14716842 G A ANKH Missense_Mutation p.R372W 0.27 deleterious(0) possibly_damaging(0.803) TCGA-CN-A63T-01 5 150946859 150946860 - C FAT2 Frame_Shift_Ins p.E545Gfs*15 0.22 TCGA-CN-A63T-01 5 153149891 153149891 G A GRIA1 Missense_Mutation p.R739Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-CN-A63T-01 5 156565652 156565652 T C MED7 3'UTR 0.36 TCGA-CN-A63T-01 5 158139994 158139994 T C EBF1 Silent p.S451S 0.22 TCGA-CN-A63T-01 5 16682009 16682009 C T MYO10 Missense_Mutation p.R1387K 0.16 tolerated(0.35) probably_damaging(0.952) TCGA-CN-A63T-01 5 171327026 171327026 C T FBXW11 Missense_Mutation p.C151Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-CN-A63T-01 5 176083883 176083883 C G TSPAN17 Intron 0.22 TCGA-CN-A63T-01 5 176304651 176304651 C A UNC5A Missense_Mutation p.P528T 0.30 tolerated(0.38) benign(0.446) TCGA-CN-A63T-01 5 176370346 176370346 C T UIMC1 Silent p.E529E 0.26 TCGA-CN-A63T-01 5 176709482 176709482 A C NSD1 Missense_Mutation p.E1970A 0.18 deleterious(0) probably_damaging(0.993) TCGA-CN-A63T-01 5 176719160 176719160 G A NSD1 Splice_Site p.X2155_splice 0.21 TCGA-CN-A63T-01 5 176914979 176914979 C T PDLIM7 Intron 0.30 TCGA-CN-A63T-01 5 23526527 23526527 C A PRDM9 Missense_Mutation p.P444T 0.20 tolerated(0.06) possibly_damaging(0.699) TCGA-CN-A63T-01 5 41057403 41057403 C G MROH2B Missense_Mutation p.L272F 0.19 deleterious(0.02) possibly_damaging(0.906) TCGA-CN-A63T-01 5 55212545 55212545 C A IL31RA Missense_Mutation p.P631H 0.22 tolerated(0.07) possibly_damaging(0.889) TCGA-CN-A63T-01 5 89770239 89770239 G A MBLAC2 5'UTR 0.38 TCGA-CN-A63T-01 5 90368415 90368415 G A GPR98 Missense_Mutation p.A6102T 0.24 benign(0.037) TCGA-CN-A63T-01 6 105845800 105845800 T C PREP Silent p.V16V 0.09 TCGA-CN-A63T-01 6 150291270 150291270 G T ULBP1 3'UTR 0.61 TCGA-CN-A63T-01 6 152443755 152443755 C T SYNE1 Missense_Mutation p.G8737D 0.40 benign(0.031) TCGA-CN-A63T-01 6 165792724 165792724 C T PDE10A Missense_Mutation p.M648I 0.13 tolerated(0.3) benign(0.002) TCGA-CN-A63T-01 6 24145808 24145808 C A NRSN1 Silent p.I74I 0.20 TCGA-CN-A63T-01 6 26468369 26468369 G T BTN2A1 Silent p.V392V 0.29 TCGA-CN-A63T-01 6 27114944 27114944 G T HIST1H2AH Missense_Mutation p.A13S 0.13 tolerated_low_confidence(0.12) unknown(0) TCGA-CN-A63T-01 6 27835199 27835199 T G HIST1H1B Missense_Mutation p.K37Q 0.25 deleterious(0.02) unknown(0) TCGA-CN-A63T-01 6 29364551 29364551 C T OR12D2 Silent p.L25L 0.17 TCGA-CN-A63T-01 6 30610897 30610897 C T ATAT1 Intron 0.25 TCGA-CN-A63T-01 6 3850791 3850791 C T FAM50B Missense_Mutation p.T249I 0.14 deleterious(0) probably_damaging(0.988) TCGA-CN-A63T-01 6 40359652 40359652 G T LRFN2 3'UTR 0.09 TCGA-CN-A63T-01 6 51917886 51917886 T A PKHD1 Missense_Mutation p.T710S 0.23 tolerated(0.47) benign(0.354) TCGA-CN-A63T-01 6 52619848 52619848 C A GSTA2 Silent p.V55V 0.14 TCGA-CN-A63T-01 6 55625272 55625272 G A BMP5 Missense_Mutation p.R363W 0.21 deleterious(0) probably_damaging(0.996) TCGA-CN-A63T-01 6 56473886 56473886 G T DST Intron 0.27 TCGA-CN-A63T-01 6 6305591 6305591 G T F13A1 Nonsense_Mutation p.Y104* 0.14 TCGA-CN-A63T-01 6 66115185 66115185 C A EYS Missense_Mutation p.S313I 0.17 tolerated(0.24) possibly_damaging(0.518) TCGA-CN-A63T-01 6 66205191 66205191 G C EYS Nonsense_Mutation p.S38* 0.24 TCGA-CN-A63T-01 6 7883432 7883432 C G TXNDC5 Missense_Mutation p.R415T 0.10 deleterious(0.02) probably_damaging(0.972) TCGA-CN-A63T-01 6 97587210 97587210 C A KLHL32 3'UTR 0.29 TCGA-CN-A63T-01 7 102453882 102453882 A T FBXL13 Silent p.P705P 0.27 TCGA-CN-A63T-01 7 104377184 104377184 C T LHFPL3 Missense_Mutation p.R170W 0.32 deleterious(0) probably_damaging(0.987) TCGA-CN-A63T-01 7 11676123 11676123 C G THSD7A Missense_Mutation p.R219P 0.20 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 7 117171079 117171079 A G CFTR Missense_Mutation p.R134G 0.18 deleterious(0) benign(0.085) TCGA-CN-A63T-01 7 117351767 117351767 C T CTTNBP2 Missense_Mutation p.V1606I 0.33 deleterious(0.05) benign(0.005) TCGA-CN-A63T-01 7 138391439 138391439 T C ATP6V0A4 Missense_Mutation p.Y818C 0.11 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 7 138545898 138545898 T C KIAA1549 Missense_Mutation p.N1745S 0.25 tolerated(0.49) benign(0.026) TCGA-CN-A63T-01 7 141672584 141672584 G A TAS2R38 Silent p.A302A 0.31 TCGA-CN-A63T-01 7 141765207 141765207 G C MGAM Missense_Mutation p.W1519C 0.18 deleterious(0) probably_damaging(0.991) TCGA-CN-A63T-01 7 142131680 142131680 T G TRBV5-6 Missense_Mutation p.Q25H 0.19 deleterious(0) probably_damaging(0.998) TCGA-CN-A63T-01 7 142962252 142962252 G A GSTK1 Missense_Mutation p.V151I 0.23 tolerated(1) benign(0.001) TCGA-CN-A63T-01 7 19035741 19035741 A C HDAC9 3'Flank 0.25 TCGA-CN-A63T-01 7 19744535 19744535 C A TWISTNB Missense_Mutation p.G88V 0.20 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 7 21639538 21639538 C A DNAH11 Missense_Mutation p.T934K 0.25 possibly_damaging(0.836) TCGA-CN-A63T-01 7 24324966 24324966 C A NPY Missense_Mutation p.P36Q 0.24 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 7 24324980 24324980 C A NPY Missense_Mutation p.P41T 0.27 tolerated(0.12) benign(0.009) TCGA-CN-A63T-01 7 28997564 28997564 G A AC005013.5 Intron 0.33 TCGA-CN-A63T-01 7 36396959 36396959 G A KIAA0895 Missense_Mutation p.S140F 0.28 tolerated_low_confidence(0.09) benign(0.013) TCGA-CN-A63T-01 7 36492336 36492336 G T ANLN 3'UTR 0.24 TCGA-CN-A63T-01 7 36677511 36677511 T C AOAH Silent p.T132T 0.13 TCGA-CN-A63T-01 7 53103925 53103925 G T POM121L12 Missense_Mutation p.K187N 0.21 deleterious(0.04) possibly_damaging(0.895) TCGA-CN-A63T-01 7 57188671 57188671 T C ZNF479 Missense_Mutation p.T151A 0.24 tolerated(0.16) benign(0.005) TCGA-CN-A63T-01 7 77764436 77764436 A T MAGI2 Missense_Mutation p.V978E 0.28 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 7 82579452 82579452 C A PCLO Missense_Mutation p.M3484I 0.19 unknown(0) TCGA-CN-A63T-01 7 94037685 94037685 G A COL1A2 Missense_Mutation p.G244D 0.25 unknown(0) TCGA-CN-A63T-01 7 95035502 95035502 T C PON2 Missense_Mutation p.I279V 0.16 tolerated(0.37) benign(0.001) TCGA-CN-A63T-01 7 97941556 97941556 G T BAIAP2L1 Silent p.S220S 0.20 TCGA-CN-A63T-01 8 100791000 100791000 T C VPS13B Missense_Mutation p.M2532T 0.37 tolerated(0.08) benign(0.008) TCGA-CN-A63T-01 8 104898192 104898192 G T RIMS2 Silent p.R455R 0.16 TCGA-CN-A63T-01 8 107763231 107763231 G - OXR1 3'UTR 0.15 TCGA-CN-A63T-01 8 110457728 110457728 C T PKHD1L1 Missense_Mutation p.P1877L 0.24 tolerated(0.71) benign(0.002) TCGA-CN-A63T-01 8 110477163 110477163 G A PKHD1L1 Missense_Mutation p.G2701E 0.34 deleterious(0) benign(0.205) TCGA-CN-A63T-01 8 113349777 113349777 C T CSMD3 Missense_Mutation p.C2279Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-CN-A63T-01 8 113349855 113349855 C T CSMD3 Missense_Mutation p.G2253E 0.15 deleterious(0) probably_damaging(0.994) TCGA-CN-A63T-01 8 113420613 113420613 G A CSMD3 Nonsense_Mutation p.Q1847* 0.38 TCGA-CN-A63T-01 8 125989609 125989609 C T ZNF572 Nonsense_Mutation p.Q367* 0.17 TCGA-CN-A63T-01 8 145742066 145742066 C A RECQL4 Missense_Mutation p.G146V 0.33 tolerated(0.31) benign(0.019) TCGA-CN-A63T-01 8 17722091 17722091 A G FGL1 3'UTR 0.13 TCGA-CN-A63T-01 8 24199226 24199226 G C ADAM28 Missense_Mutation p.E596Q 0.20 deleterious(0.01) possibly_damaging(0.795) TCGA-CN-A63T-01 8 53049182 53049182 T C ST18 Silent p.K756K 0.31 TCGA-CN-A63T-01 8 54669137 54669137 G A ATP6V1H Missense_Mutation p.R419W 0.14 deleterious(0) probably_damaging(1) TCGA-CN-A63T-01 8 55533822 55533822 A G RP1 Missense_Mutation p.E99G 0.15 deleterious(0) probably_damaging(0.948) TCGA-CN-A63T-01 8 59518528 59518528 G C NSMAF Missense_Mutation p.Q307E 0.44 tolerated(0.72) benign(0.005) TCGA-CN-A63T-01 8 623640 623640 T A ERICH1 Missense_Mutation p.S238C 0.17 tolerated(0.07) benign(0.226) TCGA-CN-A63T-01 8 72756405 72756405 C T MSC Silent p.T3T 0.27 TCGA-CN-A63T-01 8 72975701 72975701 A T TRPA1 Missense_Mutation p.F220I 0.12 tolerated(0.39) benign(0.357) TCGA-CN-A63T-01 8 92972525 92972525 G C RUNX1T1 Missense_Mutation p.T598S 0.32 tolerated_low_confidence(0.6) unknown(0) TCGA-CN-A63T-01 8 92998397 92998397 G T RUNX1T1 Missense_Mutation p.H423N 0.23 tolerated(0.3) benign(0.003) TCGA-CN-A63T-01 8 99019808 99019808 A C MATN2 Missense_Mutation p.S518R 0.34 tolerated(0.36) benign(0.314) TCGA-CN-A63T-01 9 109701312 109701312 C A ZNF462 Silent p.I2117I 0.36 TCGA-CN-A63T-01 9 113276288 113276288 T C SVEP1 Missense_Mutation p.T355A 0.44 probably_damaging(0.999) TCGA-CN-A63T-01 9 136444284 136444284 C T FAM163B Missense_Mutation p.V121M 0.19 deleterious(0) possibly_damaging(0.859) TCGA-CN-A63T-01 9 138376829 138376829 G A PPP1R26 Missense_Mutation p.G158D 0.37 deleterious(0.04) probably_damaging(0.982) TCGA-CN-A63T-01 9 84531603 84531603 C A SPATA31D5P RNA 0.55 TCGA-CN-A63T-01 9 84608275 84608275 C T SPATA31D1 Missense_Mutation p.R964C 0.54 tolerated(0.18) benign(0) TCGA-CN-A63T-01 9 8633439 8633439 C A PTPRD Missense_Mutation p.G77V 0.15 deleterious(0) probably_damaging(0.999) TCGA-CN-A63T-01 9 94488898 94488898 G T ROR2 Silent p.S437S 0.52 TCGA-CN-A63T-01 X 102317767 102317767 A C BEX1 3'UTR 0.48 TCGA-CN-A63T-01 X 123615799 123615799 G T TENM1 Missense_Mutation p.H1244Q 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-CN-A63T-01 X 130419171 130419171 G A IGSF1 Silent p.L217L 0.62 TCGA-CN-A63T-01 X 35969427 35969427 C A CXorf22 Missense_Mutation p.P279H 0.50 tolerated(0.18) benign(0.087) TCGA-CN-A63T-01 X 35985814 35985814 T A CXorf22 Missense_Mutation p.V560E 0.41 deleterious(0) probably_damaging(0.923) TCGA-CN-A63T-01 X 50135408 50135408 C G DGKK RNA 0.48 TCGA-CN-A63T-01 X 65819587 65819587 G T EDA2R Silent p.T232T 0.91 TCGA-CN-A63T-01 X 70384131 70384131 T C NLGN3 Missense_Mutation p.I289T 0.46 tolerated(0.72) possibly_damaging(0.689) TCGA-CN-A63T-01 X 84534366 84534366 G A POF1B 3'UTR 0.27 TCGA-CN-A63U-01 10 101715869 101715869 T A DNMBP Missense_Mutation p.R454S 0.60 tolerated_low_confidence(0.25) benign(0.011) TCGA-CN-A63U-01 10 125506285 125506285 C A CPXM2 Missense_Mutation p.G756W 0.47 deleterious_low_confidence(0) unknown(0) TCGA-CN-A63U-01 10 17085921 17085921 G T CUBN Missense_Mutation p.P1245H 0.41 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 10 18292042 18292042 T C SLC39A12 Intron 0.28 TCGA-CN-A63U-01 10 18690967 18690967 G - CACNB2 Frame_Shift_Del p.A110Qfs*51 0.11 TCGA-CN-A63U-01 10 33468902 33468902 C A NRP1 3'UTR 0.32 TCGA-CN-A63U-01 10 50690871 50690871 C G ERCC6 Silent p.P677P 0.45 TCGA-CN-A63U-01 10 7205850 7205850 A T SFMBT2 Missense_Mutation p.L856Q 0.22 deleterious(0) probably_damaging(0.973) TCGA-CN-A63U-01 10 85960372 85960372 A T CDHR1 Missense_Mutation p.S152C 0.41 deleterious(0) probably_damaging(0.964) TCGA-CN-A63U-01 10 85984195 85984195 G T LRIT2 Silent p.I262I 0.48 TCGA-CN-A63U-01 10 85992184 85992184 A G LRIT1 Silent p.T457T 0.54 TCGA-CN-A63U-01 10 90703570 90703570 C T ACTA2 Missense_Mutation p.R118Q 0.51 deleterious_low_confidence(0.03) probably_damaging(0.973) TCGA-CN-A63U-01 10 91163206 91163206 A G IFIT1 Missense_Mutation p.K392E 0.57 tolerated(0.06) benign(0.356) TCGA-CN-A63U-01 10 93221098 93221098 A C HECTD2 Missense_Mutation p.L165F 0.49 deleterious(0.01) possibly_damaging(0.846) TCGA-CN-A63U-01 10 97625949 97625949 G C ENTPD1 Missense_Mutation p.A460P 0.69 deleterious(0.02) probably_damaging(0.993) TCGA-CN-A63U-01 11 102464297 102464297 G T MMP20 Missense_Mutation p.Q374K 0.32 tolerated(0.05) benign(0.014) TCGA-CN-A63U-01 11 102477335 102477335 A C MMP20 Missense_Mutation p.L295R 0.35 tolerated(0.47) benign(0.032) TCGA-CN-A63U-01 11 107686528 107686528 C T SLC35F2 Missense_Mutation p.A92T 0.38 deleterious(0.03) benign(0.098) TCGA-CN-A63U-01 11 110035858 110035858 C G ZC3H12C Missense_Mutation p.P683R 0.26 deleterious(0.02) possibly_damaging(0.526) TCGA-CN-A63U-01 11 117389278 117389278 G T DSCAML1 Missense_Mutation p.N531K 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-CN-A63U-01 11 120180296 120180296 G T POU2F3 Splice_Site p.X358_splice 0.43 TCGA-CN-A63U-01 11 1213400 1213400 G C MUC5AC RNA 0.09 TCGA-CN-A63U-01 11 123477329 123477329 C A GRAMD1B Missense_Mutation p.P303T 0.43 deleterious(0.04) benign(0.031) TCGA-CN-A63U-01 11 123601242 123601242 T C ZNF202 Missense_Mutation p.T119A 0.11 tolerated(0.27) probably_damaging(0.998) TCGA-CN-A63U-01 11 124006999 124006999 C A VWA5A Missense_Mutation p.P508Q 0.14 tolerated(0.22) benign(0.024) TCGA-CN-A63U-01 11 128391975 128391975 G T ETS1 Intron 0.57 TCGA-CN-A63U-01 11 128782056 128782056 G A KCNJ5 Silent p.Q296Q 0.32 TCGA-CN-A63U-01 11 20403774 20403774 A G HTATIP2 Silent p.V198V 0.72 TCGA-CN-A63U-01 11 36520173 36520173 C T TRAF6 Missense_Mutation p.C105Y 0.54 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 11 5275521 5275521 C A HBG2 Splice_Site p.X105_splice 0.35 TCGA-CN-A63U-01 11 55135409 55135409 G A OR4A15 Missense_Mutation p.C17Y 0.32 benign(0) TCGA-CN-A63U-01 11 55798824 55798824 T C OR5AS1 Silent p.Y310Y 0.37 TCGA-CN-A63U-01 11 56058145 56058145 G T OR8H1 Missense_Mutation p.P132T 0.22 tolerated(0.21) benign(0.005) TCGA-CN-A63U-01 11 56058149 56058149 A G OR8H1 Silent p.R130R 0.21 TCGA-CN-A63U-01 11 56058167 56058167 A C OR8H1 Silent p.A124A 0.18 TCGA-CN-A63U-01 11 5776890 5776890 T G OR52N4 Missense_Mutation p.I307R 0.56 deleterious(0.01) benign(0.187) TCGA-CN-A63U-01 11 57947506 57947506 T A OR9Q1 Missense_Mutation p.V197E 0.40 deleterious(0.01) probably_damaging(0.962) TCGA-CN-A63U-01 11 57983029 57983029 G T OR1S1 Silent p.V271V 0.26 TCGA-CN-A63U-01 11 5862348 5862348 G A OR52E6 Silent p.F260F 0.53 TCGA-CN-A63U-01 11 58714638 58714638 G C GLYATL1 Intron 0.34 TCGA-CN-A63U-01 11 58978655 58978655 T A MPEG1 Missense_Mutation p.S562C 0.29 deleterious(0) probably_damaging(0.994) TCGA-CN-A63U-01 11 59807915 59807915 G T OOSP2 5'UTR 0.30 TCGA-CN-A63U-01 11 59856181 59856181 C A MS4A2 5'UTR 0.30 TCGA-CN-A63U-01 11 59860322 59860322 G C MS4A2 Splice_Site p.X126_splice 0.38 TCGA-CN-A63U-01 11 61583985 61583985 C A FADS1 Intron 0.45 TCGA-CN-A63U-01 11 62292621 62292622 - G AHNAK Frame_Shift_Ins p.K3090Qfs*6 0.23 TCGA-CN-A63U-01 11 65266592 65266592 T A MALAT1 RNA 0.27 TCGA-CN-A63U-01 11 66192145 66192145 G A NPAS4 Missense_Mutation p.R595Q 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-CN-A63U-01 11 67223911 67223911 G C CABP4 Missense_Mutation p.R180P 0.33 deleterious(0.01) benign(0.077) TCGA-CN-A63U-01 11 7064078 7064078 C A NLRP14 Missense_Mutation p.A274E 0.61 tolerated(0.41) probably_damaging(0.984) TCGA-CN-A63U-01 11 73718133 73718133 C T UCP3 5'UTR 0.35 TCGA-CN-A63U-01 11 76890166 76890166 C G MYO7A Missense_Mutation p.N786K 0.40 tolerated(0.4) benign(0.009) TCGA-CN-A63U-01 11 7981203 7981204 - T NLRP10 Frame_Shift_Ins p.N652Kfs*40 0.32 TCGA-CN-A63U-01 11 82693093 82693093 C T RAB30 3'UTR 0.38 TCGA-CN-A63U-01 11 84027932 84027932 G C DLG2 Intron 0.37 TCGA-CN-A63U-01 11 8739408 8739408 A G ST5 Silent p.D503D 0.59 TCGA-CN-A63U-01 11 92620259 92620259 C A FAT3 Nonsense_Mutation p.S4344* 0.27 TCGA-CN-A63U-01 11 93454576 93454576 A G KIAA1731 Missense_Mutation p.K1950E 0.21 tolerated(0.21) benign(0.027) TCGA-CN-A63U-01 12 101588880 101588880 C T SLC5A8 Missense_Mutation p.C177Y 0.45 deleterious(0) probably_damaging(0.992) TCGA-CN-A63U-01 12 10601978 10601978 C T KLRC1 Missense_Mutation p.C116Y 0.39 deleterious(0) probably_damaging(0.994) TCGA-CN-A63U-01 12 107937909 107937909 G T BTBD11 Missense_Mutation p.V495L 0.28 tolerated(0.74) benign(0.051) TCGA-CN-A63U-01 12 108589958 108589958 G T WSCD2 Missense_Mutation p.G117W 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-CN-A63U-01 12 120972711 120972711 G T RNF10 Missense_Mutation p.G33W 0.23 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-CN-A63U-01 12 123011535 123011535 C T RSRC2 5'UTR 0.35 TCGA-CN-A63U-01 12 129558510 129558510 C T TMEM132D Silent p.E1070E 0.31 TCGA-CN-A63U-01 12 130648746 130648746 T A FZD10 Missense_Mutation p.L420Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 12 133252047 133252047 C A POLE Missense_Mutation p.G388V 0.26 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 12 27908240 27908240 G T MRPS35 Nonsense_Mutation p.E277* 0.32 TCGA-CN-A63U-01 12 40077286 40077286 T C C12orf40 Missense_Mutation p.M429T 0.33 tolerated(0.11) benign(0.015) TCGA-CN-A63U-01 12 42554626 42554626 G C YAF2 Missense_Mutation p.P127R 0.19 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 12 4919539 4919539 A G KCNA6 Missense_Mutation p.N111S 0.30 deleterious(0.04) probably_damaging(0.974) TCGA-CN-A63U-01 12 53663740 53663740 G A ESPL1 Silent p.E338E 0.25 TCGA-CN-A63U-01 12 54639952 54639952 T A CBX5 Missense_Mutation p.E124D 0.27 tolerated(0.07) probably_damaging(0.983) TCGA-CN-A63U-01 12 55042108 55042108 G T DCD 5'UTR 0.36 TCGA-CN-A63U-01 12 6031869 6031869 C A ANO2 Missense_Mutation p.G38C 0.23 tolerated_low_confidence(0.05) benign(0.003) TCGA-CN-A63U-01 12 63544027 63544027 A G AVPR1A Missense_Mutation p.V197A 0.30 tolerated(0.17) benign(0.012) TCGA-CN-A63U-01 12 69260746 69260746 C T CPM Silent p.E290E 0.39 TCGA-CN-A63U-01 12 69742211 69742211 G C LYZ Missense_Mutation p.G8A 0.15 tolerated(0.23) benign(0.015) TCGA-CN-A63U-01 12 7031310 7031310 G C ENO2 Missense_Mutation p.G387R 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CN-A63U-01 12 7361164 7361164 G A PEX5 Silent p.R446R 0.37 TCGA-CN-A63U-01 12 78225188 78225188 G A NAV3 5'UTR 0.18 TCGA-CN-A63U-01 12 81568634 81568634 C A ACSS3 Missense_Mutation p.A389D 0.20 deleterious(0) possibly_damaging(0.88) TCGA-CN-A63U-01 12 81568637 81568637 T G ACSS3 Missense_Mutation p.L390W 0.19 deleterious(0) probably_damaging(0.956) TCGA-CN-A63U-01 12 97133811 97133811 C T C12orf55 Missense_Mutation p.T2348I 0.36 tolerated(0.09) benign(0.001) TCGA-CN-A63U-01 13 101997662 101997662 C A NALCN Nonsense_Mutation p.G252* 0.31 TCGA-CN-A63U-01 13 113030678 113030678 T C SPACA7 5'UTR 0.53 TCGA-CN-A63U-01 13 26112196 26112196 C T ATP8A2 Missense_Mutation p.S193F 0.49 deleterious(0) probably_damaging(0.97) TCGA-CN-A63U-01 13 32813404 32813404 T A FRY Missense_Mutation p.V2145D 0.51 deleterious(0) possibly_damaging(0.799) TCGA-CN-A63U-01 13 35733883 35733883 G C NBEA Missense_Mutation p.G1192A 0.43 tolerated_low_confidence(0.23) benign(0.004) TCGA-CN-A63U-01 13 52693452 52693452 A G NEK5 Intron 0.15 TCGA-CN-A63U-01 13 58208747 58208747 C A PCDH17 Silent p.P689P 0.40 TCGA-CN-A63U-01 13 58209108 58209108 C A PCDH17 Silent p.R810R 0.22 TCGA-CN-A63U-01 13 70549771 70549771 G C KLHL1 Missense_Mutation p.R221G 0.32 tolerated(0.05) benign(0.099) TCGA-CN-A63U-01 13 78337416 78337416 G C SLAIN1 3'UTR 0.22 TCGA-CN-A63U-01 13 84454456 84454456 A T SLITRK1 Missense_Mutation p.V396E 0.29 tolerated(0.25) benign(0.04) TCGA-CN-A63U-01 13 88327881 88327881 C T SLITRK5 Missense_Mutation p.R80C 0.35 deleterious(0.04) possibly_damaging(0.513) TCGA-CN-A63U-01 13 94197572 94197572 G T GPC6 Missense_Mutation p.D73Y 0.26 deleterious(0) possibly_damaging(0.903) TCGA-CN-A63U-01 14 100589873 100589873 C T EVL Intron 0.67 TCGA-CN-A63U-01 14 19988289 19988289 C - POTEM 3'UTR 0.21 TCGA-CN-A63U-01 14 22600966 22600966 C T TRAV8-7 Missense_Mutation p.A104V 0.49 deleterious(0) probably_damaging(0.983) TCGA-CN-A63U-01 14 24877399 24877399 G A NYNRIN Missense_Mutation p.A175T 0.39 tolerated_low_confidence(0.18) possibly_damaging(0.543) TCGA-CN-A63U-01 14 36989271 36989271 G A NKX2-1 Missense_Mutation p.P22S 0.36 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-CN-A63U-01 14 64493314 64493314 G T SYNE2 Missense_Mutation p.K2090N 0.34 probably_damaging(0.999) TCGA-CN-A63U-01 14 75747367 75747367 A C FOS Missense_Mutation p.Q166H 0.39 deleterious(0) probably_damaging(0.984) TCGA-CN-A63U-01 14 76957857 76957857 C G ESRRB Missense_Mutation p.I285M 0.37 deleterious(0.01) probably_damaging(0.967) TCGA-CN-A63U-01 14 77797565 77797565 G T GSTZ1 3'UTR 0.29 TCGA-CN-A63U-01 14 81575119 81575119 C A TSHR Intron 0.39 TCGA-CN-A63U-01 14 86089629 86089629 G T FLRT2 Missense_Mutation p.A591S 0.38 tolerated(0.73) benign(0.412) TCGA-CN-A63U-01 14 91662730 91662730 A C C14orf159 Missense_Mutation p.T403P 0.28 deleterious(0.03) possibly_damaging(0.642) TCGA-CN-A63U-01 14 92088146 92088146 T A CATSPERB Missense_Mutation p.N689I 0.37 tolerated(0.39) benign(0.003) TCGA-CN-A63U-01 14 95669349 95669349 G T CLMN Missense_Mutation p.S779R 0.60 tolerated(0.06) possibly_damaging(0.595) TCGA-CN-A63U-01 14 96152766 96152766 C A TCL1B 5'UTR 0.48 TCGA-CN-A63U-01 14 96783634 96783634 C A ATG2B Nonsense_Mutation p.E1020* 0.84 TCGA-CN-A63U-01 15 20876489 20876489 G T NBEAP1 RNA 0.19 TCGA-CN-A63U-01 15 22368694 22368694 C T OR4M2 Missense_Mutation p.P40L 0.12 tolerated(1) benign(0.334) TCGA-CN-A63U-01 15 25336852 25336852 T G SNORD116-23 5'Flank 0.31 TCGA-CN-A63U-01 15 28326816 28326816 C A OCA2 Missense_Mutation p.A69S 0.67 tolerated_low_confidence(0.42) benign(0.001) TCGA-CN-A63U-01 15 32972061 32972061 T C SCG5 Silent p.F107F 0.25 TCGA-CN-A63U-01 15 33218463 33218463 C A FMN1 Splice_Site p.X824_splice 0.32 TCGA-CN-A63U-01 15 40565639 40565639 A G PAK6 Missense_Mutation p.K528R 0.31 deleterious(0) possibly_damaging(0.793) TCGA-CN-A63U-01 15 42292378 42292378 G T PLA2G4E Missense_Mutation p.A259D 0.46 deleterious(0.04) possibly_damaging(0.665) TCGA-CN-A63U-01 15 48443709 48443709 C A MYEF2 Nonsense_Mutation p.G423* 0.34 TCGA-CN-A63U-01 15 48543856 48543856 T C SLC12A1 Missense_Mutation p.F611L 0.38 tolerated(0.57) benign(0.145) TCGA-CN-A63U-01 15 48703453 48703453 G C FBN1 Missense_Mutation p.L2784V 0.39 benign(0.239) TCGA-CN-A63U-01 15 48719886 48719886 G T FBN1 Nonsense_Mutation p.S2361* 0.40 TCGA-CN-A63U-01 15 53992035 53992035 A C WDR72 Silent p.P559P 0.25 TCGA-CN-A63U-01 15 54556445 54556445 G T UNC13C Missense_Mutation p.K1176N 0.46 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CN-A63U-01 15 54804027 54804027 A T UNC13C Missense_Mutation p.E1819V 0.35 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-CN-A63U-01 15 55972792 55972792 A T PRTG Silent p.I237I 0.34 TCGA-CN-A63U-01 15 58430816 58430816 T A AQP9 Missense_Mutation p.L18M 0.36 deleterious(0) probably_damaging(0.961) TCGA-CN-A63U-01 15 65219136 65219136 G T ANKDD1A Missense_Mutation p.G170W 0.31 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 15 65412286 65412286 C T PDCD7 Missense_Mutation p.C339Y 0.27 tolerated(0.72) possibly_damaging(0.744) TCGA-CN-A63U-01 15 73023941 73023941 T C BBS4 Missense_Mutation p.W304R 0.15 deleterious(0.03) possibly_damaging(0.841) TCGA-CN-A63U-01 15 79292142 79292142 C G RASGRF1 Missense_Mutation p.A913P 0.32 deleterious(0) probably_damaging(0.992) TCGA-CN-A63U-01 15 91835659 91835659 C A SV2B Silent p.T643T 0.27 TCGA-CN-A63U-01 15 99926392 99926392 C T LRRC28 3'UTR 0.18 TCGA-CN-A63U-01 16 12798821 12798821 G T CPPED1 Missense_Mutation p.S125R 0.27 deleterious(0.02) probably_damaging(0.988) TCGA-CN-A63U-01 16 21721379 21721379 G T OTOA Missense_Mutation p.K425N 0.36 deleterious(0.01) possibly_damaging(0.839) TCGA-CN-A63U-01 16 2282198 2282198 G A E4F1 Missense_Mutation p.V148M 0.03 deleterious(0.01) probably_damaging(0.97) TCGA-CN-A63U-01 16 2550805 2550805 G T TBC1D24 Missense_Mutation p.G509V 0.17 deleterious(0) probably_damaging(0.992) TCGA-CN-A63U-01 16 26147463 26147464 - A HS3ST4 Frame_Shift_Ins p.D423Rfs*33 0.24 TCGA-CN-A63U-01 16 27818821 27818821 C A GSG1L Missense_Mutation p.E295D 0.28 tolerated_low_confidence(0.09) benign(0.096) TCGA-CN-A63U-01 16 29675878 29675878 T C SPN Missense_Mutation p.W277R 0.29 deleterious(0) probably_damaging(0.934) TCGA-CN-A63U-01 16 31051077 31051077 A G STX4 Missense_Mutation p.T283A 0.38 tolerated(0.35) benign(0.002) TCGA-CN-A63U-01 16 31374634 31374634 G A ITGAX Missense_Mutation p.R550Q 0.33 tolerated(0.54) benign(0.001) TCGA-CN-A63U-01 16 65016142 65016142 G A CDH11 Silent p.I354I 0.61 TCGA-CN-A63U-01 16 67575783 67575783 G T FAM65A Missense_Mutation p.R385L 0.48 tolerated(0.06) benign(0.363) TCGA-CN-A63U-01 16 72154044 72154044 C T PMFBP1 Intron 0.59 TCGA-CN-A63U-01 16 7629799 7629799 G C RBFOX1 Silent p.P117P 0.30 TCGA-CN-A63U-01 16 7645622 7645622 G T RBFOX1 Silent p.V200V 0.29 TCGA-CN-A63U-01 16 9943623 9943623 C T GRIN2A Missense_Mutation p.V440I 0.35 tolerated(0.98) benign(0.004) TCGA-CN-A63U-01 17 10227485 10227485 A G MYH13 Silent p.L930L 0.77 TCGA-CN-A63U-01 17 12655897 12655897 C T MYOCD Missense_Mutation p.P431L 0.50 tolerated(0.15) possibly_damaging(0.786) TCGA-CN-A63U-01 17 15502028 15502028 T C CDRT1 Intron 0.32 TCGA-CN-A63U-01 17 18023725 18023725 G T MYO15A Silent p.P537P 0.51 TCGA-CN-A63U-01 17 18967290 18967290 T A SNORD3B-2 RNA 0.11 TCGA-CN-A63U-01 17 20209394 20209394 T A SPECC1 Missense_Mutation p.L1039Q 0.41 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 17 27903557 27903557 G A GIT1 Missense_Mutation p.R464W 0.33 deleterious(0) probably_damaging(0.965) TCGA-CN-A63U-01 17 32688835 32688835 T C CCL1 Missense_Mutation p.T53A 0.41 deleterious(0.02) probably_damaging(0.942) TCGA-CN-A63U-01 17 34068216 34068216 G A RASL10B Silent p.L168L 0.26 TCGA-CN-A63U-01 17 35932028 35932028 T C SYNRG Silent p.K320K 0.33 TCGA-CN-A63U-01 17 36958448 36958448 A G CWC25 Missense_Mutation p.L392P 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A63U-01 17 39334160 39334160 A C KRTAP4-2 Missense_Mutation p.F86C 0.17 tolerated(1) benign(0) TCGA-CN-A63U-01 17 39620373 39620373 G T KRT32 Missense_Mutation p.T318K 0.25 deleterious(0.01) probably_damaging(0.933) TCGA-CN-A63U-01 17 39659680 39659680 C G KRT13 Silent p.L198L 0.39 TCGA-CN-A63U-01 17 40034450 40034450 C A ACLY Splice_Site p.X798_splice 0.24 TCGA-CN-A63U-01 17 41020792 41020792 C T AOC4P RNA 0.35 TCGA-CN-A63U-01 17 43893833 43893833 G A CRHR1 Silent p.L42L 0.46 TCGA-CN-A63U-01 17 44049301 44049301 A T MAPT Silent p.P70P 0.24 TCGA-CN-A63U-01 17 48586068 48586068 A G MYCBPAP Silent p.R54R 0.57 TCGA-CN-A63U-01 17 48746498 48746498 C A ABCC3 Intron 0.37 TCGA-CN-A63U-01 17 4883494 4883494 A C CAMTA2 Missense_Mutation p.F398V 0.52 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CN-A63U-01 17 57756760 57756760 T G CLTC Silent p.V933V 0.36 TCGA-CN-A63U-01 17 64637527 64637527 T G PRKCA Missense_Mutation p.C115G 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-CN-A63U-01 17 66871463 66871463 T A ABCA8 Silent p.A1483A 0.33 TCGA-CN-A63U-01 17 66877284 66877284 C T ABCA8 Missense_Mutation p.D1299N 0.43 tolerated(0.08) benign(0.33) TCGA-CN-A63U-01 17 66925212 66925212 G T ABCA8 Missense_Mutation p.A368D 0.31 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 17 72608865 72608865 A G CD300E Missense_Mutation p.L182P 0.40 deleterious(0) probably_damaging(0.99) TCGA-CN-A63U-01 17 7577610 7577610 T A TP53 Splice_Site p.X225_splice 0.82 TCGA-CN-A63U-01 17 76475683 76475683 G A DNAH17 Missense_Mutation p.P2581L 0.46 probably_damaging(0.999) TCGA-CN-A63U-01 17 8146456 8146456 C A CTC1 Missense_Mutation p.W15L 0.53 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 18 10471671 10471671 C A APCDD1 Silent p.R129R 0.36 TCGA-CN-A63U-01 18 14542810 14542810 G T POTEC Missense_Mutation p.S112R 0.24 tolerated(0.32) probably_damaging(0.969) TCGA-CN-A63U-01 18 30791878 30791878 T A CCDC178 Missense_Mutation p.K740N 0.58 tolerated(0.33) benign(0.014) TCGA-CN-A63U-01 18 31322991 31322991 G C ASXL3 Missense_Mutation p.R1060P 0.59 probably_damaging(0.999) TCGA-CN-A63U-01 18 3456507 3456507 C G TGIF1 Missense_Mutation p.R187G 0.06 deleterious(0.02) possibly_damaging(0.856) TCGA-CN-A63U-01 18 43204711 43204711 C A SLC14A2 Missense_Mutation p.P28T 0.65 deleterious_low_confidence(0.05) benign(0.006) TCGA-CN-A63U-01 18 44392405 44392405 T G PIAS2 Silent p.S619S 0.53 TCGA-CN-A63U-01 18 47788587 47788587 T C CCDC11 Silent p.R24R 0.45 TCGA-CN-A63U-01 18 66504330 66504330 A T CCDC102B Silent p.R110R 0.56 TCGA-CN-A63U-01 18 76754127 76754127 C T SALL3 Silent p.C712C 0.35 TCGA-CN-A63U-01 18 908354 908354 C A ADCYAP1 Silent p.R111R 0.14 TCGA-CN-A63U-01 18 9887577 9887577 C T TXNDC2 Silent p.I367I 0.51 TCGA-CN-A63U-01 19 12060409 12060409 C G ZNF700 Missense_Mutation p.Q524E 0.30 tolerated(0.1) possibly_damaging(0.489) TCGA-CN-A63U-01 19 12958691 12958691 C G MAST1 Silent p.R198R 0.47 TCGA-CN-A63U-01 19 15789122 15789122 T C CYP4F12 Missense_Mutation p.Y84H 0.31 tolerated(0.08) benign(0.151) TCGA-CN-A63U-01 19 15918704 15918704 G A OR10H1 Silent p.T48T 0.32 TCGA-CN-A63U-01 19 16638948 16638948 T C CHERP Silent p.P416P 0.23 TCGA-CN-A63U-01 19 19166153 19166153 G T ARMC6 Missense_Mutation p.G368V 0.37 deleterious(0) probably_damaging(0.994) TCGA-CN-A63U-01 19 20003573 20003573 A T ZNF253 3'UTR 0.09 TCGA-CN-A63U-01 19 20117004 20117004 C G ZNF682 Missense_Mutation p.R436P 0.28 tolerated(0.22) possibly_damaging(0.602) TCGA-CN-A63U-01 19 2210791 2210791 C T DOT1L Nonsense_Mutation p.Q430* 0.26 TCGA-CN-A63U-01 19 2216475 2216475 A G DOT1L Missense_Mutation p.M707V 0.32 tolerated_low_confidence(0.21) benign(0.036) TCGA-CN-A63U-01 19 22255703 22255703 G T ZNF257 Silent p.V32V 0.36 TCGA-CN-A63U-01 19 22939269 22939269 C A ZNF99 3'Flank 0.32 TCGA-CN-A63U-01 19 2434809 2434809 G A LMNB2 Nonsense_Mutation p.Q320* 0.34 TCGA-CN-A63U-01 19 31769229 31769229 C T TSHZ3 Silent p.K490K 0.18 TCGA-CN-A63U-01 19 33110209 33110209 G A ANKRD27 Missense_Mutation p.S655L 0.21 tolerated(0.2) benign(0.307) TCGA-CN-A63U-01 19 36234912 36234912 C T U2AF1L4 Intron 0.22 TCGA-CN-A63U-01 19 36939917 36939917 C T ZNF566 Missense_Mutation p.D408N 0.20 tolerated(0.35) benign(0.001) TCGA-CN-A63U-01 19 39805043 39805043 C A LRFN1 Missense_Mutation p.V312L 0.37 tolerated(1) benign(0.017) TCGA-CN-A63U-01 19 39805044 39805044 C A LRFN1 Silent p.V311V 0.37 TCGA-CN-A63U-01 19 3981953 3981954 - G EEF2 Frame_Shift_Ins p.I297Hfs*6 0.25 TCGA-CN-A63U-01 19 41220505 41220505 C - ADCK4 Frame_Shift_Del p.T12Pfs*64 0.38 TCGA-CN-A63U-01 19 41248439 41248439 G A C19orf54 Missense_Mutation p.R319W 0.35 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 19 4154951 4154951 T C CREB3L3 Missense_Mutation p.L28P 0.32 deleterious(0) probably_damaging(0.997) TCGA-CN-A63U-01 19 4216579 4216579 G A ANKRD24 Silent p.Q474Q 0.33 TCGA-CN-A63U-01 19 4290529 4290529 A T SHD Missense_Mutation p.S308C 0.32 deleterious(0.04) possibly_damaging(0.861) TCGA-CN-A63U-01 19 43262174 43262174 G T PSG8 Missense_Mutation p.P230Q 0.26 deleterious(0.02) probably_damaging(0.934) TCGA-CN-A63U-01 19 43683276 43683276 T A PSG5 Intron 0.38 TCGA-CN-A63U-01 19 44679718 44679718 G T ZNF226 Missense_Mutation p.W101C 0.48 deleterious(0.04) benign(0.002) TCGA-CN-A63U-01 19 45452530 45452530 C A APOC2 3'UTR 0.29 TCGA-CN-A63U-01 19 47865833 47865833 G C DHX34 Silent p.A492A 0.21 TCGA-CN-A63U-01 19 48806048 48806048 C A CCDC114 Missense_Mutation p.K344N 0.18 tolerated(0.46) benign(0.001) TCGA-CN-A63U-01 19 49351230 49351230 T C PLEKHA4 Missense_Mutation p.Q498R 0.47 deleterious(0.03) benign(0.018) TCGA-CN-A63U-01 19 50838158 50838158 G A NAPSB RNA 0.19 TCGA-CN-A63U-01 19 51015734 51015734 G C ASPDH Missense_Mutation p.P179R 0.55 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 19 51330287 51330287 G T KLK15 Missense_Mutation p.L110M 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-CN-A63U-01 19 51563204 51563204 T C KLK13 Missense_Mutation p.E129G 0.14 deleterious(0) possibly_damaging(0.619) TCGA-CN-A63U-01 19 52660719 52660719 C A ZNF836 Missense_Mutation p.V73L 0.38 tolerated(0.74) benign(0.003) TCGA-CN-A63U-01 19 53645668 53645668 G A ZNF347 Missense_Mutation p.T139I 0.43 tolerated(1) benign(0.001) TCGA-CN-A63U-01 19 54385709 54385709 A T PRKCG 5'UTR 0.17 TCGA-CN-A63U-01 19 54483177 54483177 G C CACNG8 Missense_Mutation p.G142R 0.24 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 19 54969305 54969305 G T LENG8 Missense_Mutation p.Q642H 0.39 deleterious(0) probably_damaging(0.991) TCGA-CN-A63U-01 19 55087315 55087315 C T LILRA2 Missense_Mutation p.P332S 0.42 tolerated(0.2) possibly_damaging(0.491) TCGA-CN-A63U-01 19 55146110 55146110 G C LILRB1 Missense_Mutation p.G461A 0.31 tolerated(0.57) benign(0.022) TCGA-CN-A63U-01 19 55435049 55435049 G A NLRP7 3'UTR 0.38 TCGA-CN-A63U-01 19 56393031 56393031 C G NLRP4 3'UTR 0.20 TCGA-CN-A63U-01 19 56573053 56573053 T C NLRP5 3'UTR 0.23 TCGA-CN-A63U-01 19 56701420 56701420 G T ZSCAN5B Missense_Mutation p.H422N 0.43 deleterious(0.01) benign(0.245) TCGA-CN-A63U-01 19 57132924 57132924 C T ZNF71 Missense_Mutation p.P90L 0.22 tolerated(0.08) benign(0.001) TCGA-CN-A63U-01 19 57327373 57327373 T C PEG3 Missense_Mutation p.I813V 0.42 tolerated(0.3) benign(0.007) TCGA-CN-A63U-01 19 5772918 5772918 C T CATSPERD Missense_Mutation p.P628L 0.36 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 19 57743544 57743544 G T AURKC Missense_Mutation p.G83V 0.44 tolerated(0.07) probably_damaging(0.994) TCGA-CN-A63U-01 19 5776249 5776249 C A CATSPERD Silent p.G673G 0.38 TCGA-CN-A63U-01 19 58199496 58199496 G A ZNF551 Missense_Mutation p.S618N 0.45 tolerated(0.2) benign(0.009) TCGA-CN-A63U-01 19 7589876 7589876 G - MCOLN1 Frame_Shift_Del p.Y22Mfs*29 0.25 TCGA-CN-A63U-01 19 7677154 7677154 C T CAMSAP3 Missense_Mutation p.P619L 0.27 deleterious(0.02) benign(0.028) TCGA-CN-A63U-01 19 8670004 8670004 C G ADAMTS10 Missense_Mutation p.E110Q 0.45 tolerated(0.26) possibly_damaging(0.685) TCGA-CN-A63U-01 19 9014624 9014624 C A MUC16 Missense_Mutation p.R12784M 0.40 probably_damaging(0.973) TCGA-CN-A63U-01 19 9088007 9088007 C T MUC16 Missense_Mutation p.A1270T 0.29 unknown(0) TCGA-CN-A63U-01 19 9088024 9088024 G A MUC16 Missense_Mutation p.T1264I 0.30 unknown(0) TCGA-CN-A63U-01 19 9578249 9578249 C T ZNF560 Silent p.K458K 0.34 TCGA-CN-A63U-01 1 101196842 101196842 C - VCAM1 Frame_Shift_Del p.D434Tfs*17 0.28 TCGA-CN-A63U-01 1 108417604 108417604 C A VAV3 Silent p.T80T 0.16 TCGA-CN-A63U-01 1 115222283 115222283 G - AMPD1 Frame_Shift_Del p.Q305Rfs*12 0.15 TCGA-CN-A63U-01 1 151774476 151774476 G T LINGO4 Silent p.I235I 0.24 TCGA-CN-A63U-01 1 152079701 152079701 G T TCHH 3'UTR 0.18 TCGA-CN-A63U-01 1 152277643 152277643 C T FLG Missense_Mutation p.R3240H 0.37 unknown(0) TCGA-CN-A63U-01 1 152327245 152327245 G C FLG2 Nonsense_Mutation p.S1006* 0.44 TCGA-CN-A63U-01 1 155271092 155271092 G A PKLR Missense_Mutation p.P32L 0.51 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CN-A63U-01 1 155582079 155582079 G T MSTO1 Missense_Mutation p.G262V 0.28 deleterious(0) probably_damaging(0.998) TCGA-CN-A63U-01 1 158227272 158227272 A T CD1A Silent p.I315I 0.24 TCGA-CN-A63U-01 1 158324217 158324217 T - CD1E Frame_Shift_Del p.F37Sfs*41 0.14 TCGA-CN-A63U-01 1 158817612 158817612 G C MNDA Missense_Mutation p.C361S 0.36 tolerated(0.06) possibly_damaging(0.715) TCGA-CN-A63U-01 1 160276193 160276193 G A COPA Silent p.L465L 0.22 TCGA-CN-A63U-01 1 161518319 161518319 C T FCGR3A Missense_Mutation p.A107T 0.12 tolerated(0.65) benign(0.001) TCGA-CN-A63U-01 1 161599676 161599676 C T FCGR3B Missense_Mutation p.A107T 0.37 tolerated(0.7) benign(0.001) TCGA-CN-A63U-01 1 161654957 161654957 G A RPL31P11 RNA 0.30 TCGA-CN-A63U-01 1 162335132 162335132 G A NOS1AP Intron 0.56 TCGA-CN-A63U-01 1 16376150 16376150 G A CLCNKB Silent p.V273V 0.31 TCGA-CN-A63U-01 1 169500098 169500098 C T F5 Missense_Mutation p.A1712T 0.54 deleterious(0.03) probably_damaging(0.947) TCGA-CN-A63U-01 1 172356363 172356363 C A DNM3 Missense_Mutation p.Q717K 0.15 tolerated(0.08) benign(0.219) TCGA-CN-A63U-01 1 176526072 176526072 G C PAPPA2 Missense_Mutation p.R205P 0.20 tolerated(0.16) benign(0) TCGA-CN-A63U-01 1 176852072 176852072 C A ASTN1 Missense_Mutation p.M1095I 0.16 tolerated(0.11) possibly_damaging(0.898) TCGA-CN-A63U-01 1 177245544 177245544 C T BRINP2 Missense_Mutation p.T329I 0.17 tolerated(0.2) benign(0) TCGA-CN-A63U-01 1 179452356 179452356 C T AXDND1 Silent p.H697H 0.05 TCGA-CN-A63U-01 1 180047719 180047719 G T CEP350 Missense_Mutation p.Q1963H 0.17 benign(0.013) TCGA-CN-A63U-01 1 182355445 182355445 C A GLUL Missense_Mutation p.G141W 0.15 deleterious(0) probably_damaging(0.975) TCGA-CN-A63U-01 1 182555531 182555531 C T RNASEL Silent p.K137K 0.59 TCGA-CN-A63U-01 1 183221724 183221724 G - NMNAT2 3'UTR 0.47 TCGA-CN-A63U-01 1 196397339 196397339 G T KCNT2 Missense_Mutation p.H294N 0.62 deleterious(0.04) benign(0.124) TCGA-CN-A63U-01 1 197029575 197029575 A G F13B Silent p.H242H 0.20 TCGA-CN-A63U-01 1 197403841 197403841 G A CRB1 Missense_Mutation p.A950T 0.54 tolerated(0.1) possibly_damaging(0.791) TCGA-CN-A63U-01 1 213181682 213181682 G A ANGEL2 Missense_Mutation p.S171F 0.14 deleterious(0) probably_damaging(0.998) TCGA-CN-A63U-01 1 214556821 214556821 G A PTPN14 Missense_Mutation p.R793W 0.18 deleterious(0) probably_damaging(0.971) TCGA-CN-A63U-01 1 216052140 216052140 G A USH2A Nonsense_Mutation p.Q2842* 0.16 TCGA-CN-A63U-01 1 216219844 216219844 A G USH2A Missense_Mutation p.I2085T 0.64 possibly_damaging(0.883) TCGA-CN-A63U-01 1 217947767 217947767 C G SPATA17 Missense_Mutation p.P204R 0.53 tolerated(0.3) benign(0.002) TCGA-CN-A63U-01 1 220091721 220091721 G T SLC30A10 Nonsense_Mutation p.Y278* 0.13 TCGA-CN-A63U-01 1 221053746 221053746 T C HLX Missense_Mutation p.S183P 0.68 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 1 2235418 2235418 C T SKI Nonsense_Mutation p.Q451* 0.30 TCGA-CN-A63U-01 1 226578208 226578208 G T PARP1 Missense_Mutation p.P174T 0.54 tolerated(0.14) benign(0.014) TCGA-CN-A63U-01 1 228602428 228602428 G T TRIM17 Missense_Mutation p.P116T 0.10 tolerated(0.34) probably_damaging(1) TCGA-CN-A63U-01 1 229770836 229770836 G - URB2 Frame_Shift_Del p.R159Sfs*8 0.17 TCGA-CN-A63U-01 1 229771138 229771138 G T URB2 Missense_Mutation p.D260Y 0.06 deleterious(0.01) possibly_damaging(0.564) TCGA-CN-A63U-01 1 230903329 230903329 C G CAPN9 Missense_Mutation p.I193M 0.15 tolerated(0.28) benign(0.038) TCGA-CN-A63U-01 1 237789017 237789017 G T RYR2 Missense_Mutation p.G2027W 0.12 probably_damaging(0.945) TCGA-CN-A63U-01 1 238090561 238090561 C T RP11-193H5.1 RNA 0.59 TCGA-CN-A63U-01 1 240990451 240990451 C A RGS7 Nonsense_Mutation p.E211* 0.18 TCGA-CN-A63U-01 1 243801040 243801040 A T AKT3 Missense_Mutation p.M145K 0.58 deleterious(0) benign(0.06) TCGA-CN-A63U-01 1 244587320 244587320 G C ADSS Silent p.S172S 0.24 TCGA-CN-A63U-01 1 247752567 247752567 G C OR2G2 Silent p.G302G 0.17 TCGA-CN-A63U-01 1 247835613 247835613 A T OR13G1 Missense_Mutation p.V244E 0.34 deleterious(0) possibly_damaging(0.885) TCGA-CN-A63U-01 1 248512662 248512662 A G OR14C36 Missense_Mutation p.M196V 0.31 tolerated(0.52) benign(0) TCGA-CN-A63U-01 1 248616210 248616210 G C OR2T2 Missense_Mutation p.V38L 0.31 tolerated(0.14) probably_damaging(0.978) TCGA-CN-A63U-01 1 248757051 248757051 T A OR2T10 Missense_Mutation p.T7S 0.62 tolerated(0.11) benign(0.081) TCGA-CN-A63U-01 1 249211348 249211348 A C PGBD2 Missense_Mutation p.S189R 0.15 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 1 26504062 26504062 C G CNKSR1 Silent p.T8T 0.15 TCGA-CN-A63U-01 1 27875113 27875113 G C AHDC1 Missense_Mutation p.Q1172E 0.20 deleterious(0.03) benign(0.092) TCGA-CN-A63U-01 1 29344777 29344777 G A EPB41 Missense_Mutation p.G316E 0.37 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 1 31191603 31191603 T G MATN1 Missense_Mutation p.K215Q 0.38 tolerated(0.3) possibly_damaging(0.547) TCGA-CN-A63U-01 1 32265700 32265700 C T SPOCD1 Missense_Mutation p.G549S 0.34 deleterious(0.04) probably_damaging(0.976) TCGA-CN-A63U-01 1 34276392 34276392 G A CSMD2 Silent p.D426D 0.23 TCGA-CN-A63U-01 1 42047048 42047048 G A HIVEP3 Missense_Mutation p.P1141S 0.27 probably_damaging(0.998) TCGA-CN-A63U-01 1 42047689 42047689 G - HIVEP3 Frame_Shift_Del p.P927Lfs*14 0.31 TCGA-CN-A63U-01 1 43308322 43308322 C G ERMAP Missense_Mutation p.L283V 0.49 deleterious(0) probably_damaging(0.998) TCGA-CN-A63U-01 1 44415343 44415343 C T IPO13 Silent p.A113A 0.16 TCGA-CN-A63U-01 1 47548131 47548131 C T CYP4Z1 Silent p.L164L 0.48 TCGA-CN-A63U-01 1 53544461 53544461 C A PODN Missense_Mutation p.R475S 0.24 deleterious(0.01) possibly_damaging(0.895) TCGA-CN-A63U-01 1 57252860 57252860 A C C1orf168 Missense_Mutation p.L314R 0.25 tolerated(0.08) possibly_damaging(0.704) TCGA-CN-A63U-01 1 62393502 62393502 G T INADL Splice_Site p.X1224_splice 0.33 TCGA-CN-A63U-01 1 67880980 67880980 G C SERBP1 Missense_Mutation p.P347A 0.38 tolerated(0.52) possibly_damaging(0.826) TCGA-CN-A63U-01 1 75114977 75114977 G T C1orf173 Missense_Mutation p.L16I 0.22 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 1 77510209 77510209 G T ST6GALNAC5 Missense_Mutation p.Q194H 0.26 benign(0.166) TCGA-CN-A63U-01 1 77752771 77752771 C A AK5 Missense_Mutation p.P69Q 0.29 deleterious(0) probably_damaging(0.983) TCGA-CN-A63U-01 1 79392735 79392735 G T ELTD1 Missense_Mutation p.P307T 0.37 tolerated(0.22) benign(0.155) TCGA-CN-A63U-01 1 79470766 79470766 G T ELTD1 Missense_Mutation p.T54K 0.40 tolerated_low_confidence(0.08) benign(0.13) TCGA-CN-A63U-01 1 86590878 86590878 C A COL24A1 Missense_Mutation p.D381Y 0.38 deleterious(0.03) benign(0.163) TCGA-CN-A63U-01 1 89732735 89732735 A G GBP5 Missense_Mutation p.V177A 0.04 deleterious(0.01) probably_damaging(0.974) TCGA-CN-A63U-01 1 99157183 99157183 G C SNX7 Missense_Mutation p.L189F 0.31 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 1 99164286 99164286 A G SNX7 Missense_Mutation p.Y288C 0.52 tolerated(0.07) benign(0.041) TCGA-CN-A63U-01 1 99418770 99418770 A G LPPR5 Silent p.Y159Y 0.34 TCGA-CN-A63U-01 20 10286817 10286817 G A SNAP25 Missense_Mutation p.R198H 0.24 deleterious(0.01) benign(0.025) TCGA-CN-A63U-01 20 21689222 21689222 G T PAX1 Missense_Mutation p.A315S 0.40 tolerated_low_confidence(0.34) benign(0.005) TCGA-CN-A63U-01 20 21689289 21689289 T A PAX1 Missense_Mutation p.V337E 0.28 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-CN-A63U-01 20 25300923 25300923 C A ABHD12 Missense_Mutation p.A152S 0.32 deleterious(0.01) possibly_damaging(0.58) TCGA-CN-A63U-01 20 29631619 29631619 A T FRG1B Missense_Mutation p.I139F 0.39 deleterious(0.01) possibly_damaging(0.836) TCGA-CN-A63U-01 20 3212001 3212001 G A SLC4A11 Missense_Mutation p.S351F 0.40 tolerated(0.12) possibly_damaging(0.659) TCGA-CN-A63U-01 20 32232454 32232454 C - CBFA2T2 3'UTR 0.24 TCGA-CN-A63U-01 20 42169783 42169783 C A L3MBTL1 3'UTR 0.31 TCGA-CN-A63U-01 20 45188830 45188830 G C SLC13A3 Missense_Mutation p.T547R 0.32 deleterious(0) probably_damaging(0.983) TCGA-CN-A63U-01 20 50244148 50244148 C T ATP9A Silent p.Q612Q 0.37 TCGA-CN-A63U-01 20 56234686 56234686 C A PMEPA1 Silent p.T59T 0.35 TCGA-CN-A63U-01 20 61428574 61428574 G T MRGBP Missense_Mutation p.M87I 0.37 deleterious(0.04) benign(0.041) TCGA-CN-A63U-01 20 8113331 8113331 G T PLCB1 Missense_Mutation p.L11F 0.61 deleterious(0.01) benign(0.05) TCGA-CN-A63U-01 21 10862813 10862813 G T IGHV1OR21-1 Missense_Mutation p.V37L 0.14 tolerated(0.11) benign(0.439) TCGA-CN-A63U-01 21 22746196 22746196 G T NCAM2 Missense_Mutation p.R353L 0.39 deleterious(0.01) probably_damaging(0.942) TCGA-CN-A63U-01 21 34166041 34166041 A G C21orf62 3'UTR 0.34 TCGA-CN-A63U-01 21 41142994 41142994 T C IGSF5 Silent p.V190V 0.41 TCGA-CN-A63U-01 21 46000028 46000028 G T KRTAP10-5 Missense_Mutation p.P143H 0.32 deleterious(0) unknown(0) TCGA-CN-A63U-01 21 47805845 47805845 C T PCNT Silent p.G1137G 0.38 TCGA-CN-A63U-01 22 19119173 19119173 C G TSSK2 Nonsense_Mutation p.Y87* 0.39 TCGA-CN-A63U-01 22 19868178 19868178 G A TXNRD2 Silent p.F383F 0.05 TCGA-CN-A63U-01 22 22317262 22317262 C - TOP3B Frame_Shift_Del p.G403Vfs*79 0.30 TCGA-CN-A63U-01 22 22453565 22453565 C T IGLV8-61 Missense_Mutation p.A104V 0.31 tolerated(0.61) possibly_damaging(0.901) TCGA-CN-A63U-01 22 22892163 22892163 A C PRAME Missense_Mutation p.L313R 0.49 deleterious(0) probably_damaging(0.994) TCGA-CN-A63U-01 22 24627431 24627431 G T GGT5 Silent p.P274P 0.33 TCGA-CN-A63U-01 22 29966184 29966184 T A NIPSNAP1 Missense_Mutation p.K80M 0.16 deleterious(0) probably_damaging(0.98) TCGA-CN-A63U-01 22 37584341 37584341 G T C1QTNF6 5'Flank 0.17 TCGA-CN-A63U-01 22 37882099 37882099 G T MFNG Silent p.P39P 0.43 TCGA-CN-A63U-01 22 43830954 43830954 G T MPPED1 Missense_Mutation p.M75I 0.22 tolerated(0.24) benign(0.037) TCGA-CN-A63U-01 22 45758803 45758803 T G SMC1B Missense_Mutation p.I842L 0.53 tolerated(0.08) benign(0.011) TCGA-CN-A63U-01 2 105654564 105654564 G A MRPS9 Missense_Mutation p.C5Y 0.26 deleterious_low_confidence(0.02) benign(0.235) TCGA-CN-A63U-01 2 108507299 108507299 G T RGPD4 3'Flank 0.25 TCGA-CN-A63U-01 2 11337449 11337449 C T ROCK2 Missense_Mutation p.R1102Q 0.22 tolerated(0.05) possibly_damaging(0.904) TCGA-CN-A63U-01 2 120097421 120097421 T C C2orf76 Missense_Mutation p.I39V 0.32 tolerated(0.3) benign(0.035) TCGA-CN-A63U-01 2 121747727 121747727 G C GLI2 Missense_Mutation p.A1413P 0.34 tolerated(0.08) possibly_damaging(0.502) TCGA-CN-A63U-01 2 128186316 128186316 C A PROC Silent p.R394R 0.33 TCGA-CN-A63U-01 2 12880894 12880894 G T TRIB2 Nonsense_Mutation p.E336* 0.35 TCGA-CN-A63U-01 2 128890738 128890738 T C UGGT1 Silent p.D467D 0.38 TCGA-CN-A63U-01 2 130877898 130877898 C A POTEF Missense_Mutation p.W64L 0.37 deleterious_low_confidence(0) benign(0.366) TCGA-CN-A63U-01 2 133175182 133175182 C A GPR39 Silent p.L189L 0.42 TCGA-CN-A63U-01 2 136399236 136399236 T A R3HDM1 Missense_Mutation p.H450Q 0.32 tolerated(0.39) benign(0.001) TCGA-CN-A63U-01 2 138724781 138724781 G C HNMT Intron 0.45 TCGA-CN-A63U-01 2 141208161 141208161 C A LRP1B Nonsense_Mutation p.G3345* 0.33 TCGA-CN-A63U-01 2 141267547 141267547 C A LRP1B Missense_Mutation p.G2783V 0.26 probably_damaging(0.988) TCGA-CN-A63U-01 2 141751612 141751612 C A LRP1B Missense_Mutation p.G866C 0.26 probably_damaging(0.998) TCGA-CN-A63U-01 2 141771282 141771282 A G LRP1B Silent p.P741P 0.35 TCGA-CN-A63U-01 2 141986941 141986941 C A LRP1B Nonsense_Mutation p.G221* 0.34 TCGA-CN-A63U-01 2 143913225 143913225 G C ARHGAP15 Splice_Site p.X55_splice 0.31 TCGA-CN-A63U-01 2 155711766 155711766 A G KCNJ3 Missense_Mutation p.R483G 0.31 deleterious_low_confidence(0.01) benign(0.162) TCGA-CN-A63U-01 2 158287446 158287446 C A CYTIP Missense_Mutation p.C103F 0.35 tolerated(0.7) benign(0.149) TCGA-CN-A63U-01 2 166915161 166915161 C T SCN1A Missense_Mutation p.R101Q 0.24 deleterious(0) benign(0.099) TCGA-CN-A63U-01 2 167089972 167089972 C T SCN9A Missense_Mutation p.V1257I 0.39 tolerated(0.17) possibly_damaging(0.724) TCGA-CN-A63U-01 2 167273409 167273409 G T SCN7A Silent p.I1074I 0.42 TCGA-CN-A63U-01 2 167760064 167760064 T A XIRP2 Missense_Mutation p.S24R 0.40 benign(0.083) TCGA-CN-A63U-01 2 168100146 168100146 G T XIRP2 Silent p.S748S 0.28 TCGA-CN-A63U-01 2 168100279 168100279 C A XIRP2 Silent p.R793R 0.32 TCGA-CN-A63U-01 2 175427287 175427287 G A WIPF1 Silent p.P500P 0.41 TCGA-CN-A63U-01 2 176946954 176946954 G A EVX2 Silent p.R217R 0.50 TCGA-CN-A63U-01 2 179411937 179411937 T C TTN Missense_Mutation p.K31439E 0.43 TCGA-CN-A63U-01 2 179434884 179434884 C A TTN Missense_Mutation p.W25325C 0.44 TCGA-CN-A63U-01 2 179437569 179437569 C T TTN Silent p.L24430L 0.31 TCGA-CN-A63U-01 2 179529260 179529260 C T TTN Silent p.P12069P 0.50 TCGA-CN-A63U-01 2 180041225 180041225 C A SESTD1 Missense_Mutation p.G69C 0.21 tolerated(0.08) probably_damaging(0.993) TCGA-CN-A63U-01 2 182543549 182543549 C T NEUROD1 Silent p.E13E 0.08 TCGA-CN-A63U-01 2 185802584 185802584 C A ZNF804A Missense_Mutation p.P821T 0.32 tolerated(0.6) benign(0) TCGA-CN-A63U-01 2 188223833 188223833 T G CALCRL Missense_Mutation p.H289P 0.39 tolerated(0.07) benign(0.009) TCGA-CN-A63U-01 2 190719157 190719157 G T PMS1 Missense_Mutation p.V387F 0.36 tolerated(0.77) benign(0.001) TCGA-CN-A63U-01 2 192700579 192700579 T C SDPR 3'UTR 0.45 TCGA-CN-A63U-01 2 207833012 207833012 A G CPO Missense_Mutation p.N268S 0.33 tolerated(0.35) benign(0.06) TCGA-CN-A63U-01 2 213914594 213914594 G A IKZF2 Silent p.P139P 0.34 TCGA-CN-A63U-01 2 223158773 223158773 A G PAX3 Intron 0.20 TCGA-CN-A63U-01 2 223168728 223168728 G T CCDC140 Missense_Mutation p.R36L 0.50 deleterious_low_confidence(0.05) benign(0.433) TCGA-CN-A63U-01 2 223917882 223917882 G C KCNE4 Missense_Mutation p.A112P 0.19 tolerated(0.4) benign(0.017) TCGA-CN-A63U-01 2 226447443 226447443 C A NYAP2 Missense_Mutation p.P437H 0.51 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 2 226447444 226447444 C A NYAP2 Silent p.P437P 0.51 TCGA-CN-A63U-01 2 227922252 227922252 C T COL4A4 Silent p.G816G 0.39 TCGA-CN-A63U-01 2 228104886 228104886 G A COL4A3 Missense_Mutation p.G58S 0.21 probably_damaging(1) TCGA-CN-A63U-01 2 229890361 229890361 G T PID1 Missense_Mutation p.S245Y 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-CN-A63U-01 2 234627556 234627556 G T UGT1A4 Missense_Mutation p.K30N 0.26 tolerated(0.14) possibly_damaging(0.491) TCGA-CN-A63U-01 2 238287556 238287556 A G COL6A3 Silent p.R740R 0.38 TCGA-CN-A63U-01 2 242135264 242135264 C T ANO7 Intron 0.38 TCGA-CN-A63U-01 2 30863547 30863547 A C LCLAT1 3'UTR 0.34 TCGA-CN-A63U-01 2 30966288 30966288 A C CAPN13 Missense_Mutation p.F469C 0.69 deleterious(0) probably_damaging(0.994) TCGA-CN-A63U-01 2 43452511 43452512 - C ZFP36L2 Frame_Shift_Ins p.G145Rfs*329 0.45 TCGA-CN-A63U-01 2 44021790 44021790 G A DYNC2LI1 Intron 0.42 TCGA-CN-A63U-01 2 47205965 47205965 G A TTC7A Missense_Mutation p.G228D 0.21 deleterious(0.02) benign(0.082) TCGA-CN-A63U-01 2 47707857 47707857 G A MSH2 Silent p.G827G 0.10 TCGA-CN-A63U-01 2 48914996 48914996 C G LHCGR Missense_Mutation p.R647P 0.31 deleterious(0.01) possibly_damaging(0.865) TCGA-CN-A63U-01 2 64863928 64863928 G A SERTAD2 Silent p.D26D 0.31 TCGA-CN-A63U-01 2 67637252 67637252 G C ETAA1 3'UTR 0.67 TCGA-CN-A63U-01 2 7164499 7164499 G A RNF144A Splice_Site p.X170_splice 0.75 TCGA-CN-A63U-01 2 79255407 79255407 G T REG3G 3'UTR 0.24 TCGA-CN-A63U-01 2 79312248 79312248 A G REG1B 3'UTR 0.38 TCGA-CN-A63U-01 2 79348048 79348048 C A REG1A Missense_Mutation p.Q21K 0.69 tolerated(0.07) benign(0) TCGA-CN-A63U-01 2 80530257 80530257 G T LRRTM1 Missense_Mutation p.P230T 0.27 deleterious(0) probably_damaging(0.996) TCGA-CN-A63U-01 2 80875093 80875093 C A CTNNA2 3'UTR 0.25 TCGA-CN-A63U-01 2 85922485 85922485 C A GNLY Missense_Mutation p.A32E 0.34 tolerated(0.08) probably_damaging(0.968) TCGA-CN-A63U-01 2 86071632 86071632 T C ST3GAL5 Missense_Mutation p.I299V 0.13 tolerated(0.24) benign(0.152) TCGA-CN-A63U-01 2 89999549 89999549 A G IGKV2D-28 Silent p.L117L 0.75 TCGA-CN-A63U-01 2 90193361 90193361 C A IGKV1D-13 Silent p.T96T 0.45 TCGA-CN-A63U-01 2 96858995 96858995 C T STARD7 Nonsense_Mutation p.W215* 0.45 TCGA-CN-A63U-01 2 96936884 96936884 G T CIAO1 Missense_Mutation p.G272V 0.35 deleterious(0) probably_damaging(0.998) TCGA-CN-A63U-01 3 100961570 100961570 T C IMPG2 Missense_Mutation p.N995S 0.18 deleterious(0) probably_damaging(0.995) TCGA-CN-A63U-01 3 108788584 108788584 A T MORC1 Missense_Mutation p.F237Y 0.18 deleterious(0) probably_damaging(0.926) TCGA-CN-A63U-01 3 126261332 126261332 C G CHST13 Missense_Mutation p.P313A 0.18 tolerated(0.06) benign(0.19) TCGA-CN-A63U-01 3 128712000 128712000 G T KIAA1257 Missense_Mutation p.R50S 0.21 tolerated(0.19) benign(0.195) TCGA-CN-A63U-01 3 129183607 129183607 C T IFT122 Silent p.I233I 0.18 TCGA-CN-A63U-01 3 138218970 138218970 C A CEP70 Missense_Mutation p.G545V 0.46 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 3 13860391 13860391 G T WNT7A 3'UTR 0.53 TCGA-CN-A63U-01 3 147113786 147113786 G T ZIC4 Missense_Mutation p.Q231K 0.40 tolerated(0.06) benign(0.027) TCGA-CN-A63U-01 3 157815741 157815741 G A SHOX2 3'UTR 0.59 TCGA-CN-A63U-01 3 161064099 161064099 G C SPTSSB Missense_Mutation p.R5G 0.54 tolerated(0.55) benign(0.002) TCGA-CN-A63U-01 3 164906825 164906825 C T SLITRK3 Silent p.T598T 0.53 TCGA-CN-A63U-01 3 169663677 169663677 G A RP11-379K17.4 RNA 0.19 TCGA-CN-A63U-01 3 170732404 170732404 G A SLC2A2 Silent p.N75N 0.67 TCGA-CN-A63U-01 3 173998518 173998518 G T NLGN1 Missense_Mutation p.D633Y 0.33 tolerated(0.14) possibly_damaging(0.804) TCGA-CN-A63U-01 3 173998912 173998912 T C NLGN1 Missense_Mutation p.L764P 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CN-A63U-01 3 183699570 183699570 G T ABCC5 Nonsense_Mutation p.Y364* 0.39 TCGA-CN-A63U-01 3 185882752 185882752 C G DGKG Silent p.G717G 0.36 TCGA-CN-A63U-01 3 193171890 193171890 C A ATP13A4 Missense_Mutation p.R676M 0.41 deleterious(0.01) probably_damaging(0.969) TCGA-CN-A63U-01 3 194080707 194080707 G C LRRC15 Missense_Mutation p.L362V 0.38 deleterious(0.03) probably_damaging(0.919) TCGA-CN-A63U-01 3 19575380 19575380 C T KCNH8 Missense_Mutation p.S1038L 0.58 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-CN-A63U-01 3 27349396 27349396 C G NEK10 Missense_Mutation p.E253Q 0.61 deleterious(0) probably_damaging(0.991) TCGA-CN-A63U-01 3 32483410 32483410 G C CMTM7 Missense_Mutation p.V80L 0.59 deleterious(0) probably_damaging(0.945) TCGA-CN-A63U-01 3 38592839 38592839 C - SCN5A Frame_Shift_Del p.G1675Afs*112 0.37 TCGA-CN-A63U-01 3 40557746 40557746 G A ZNF620 Missense_Mutation p.E221K 0.67 tolerated(0.08) probably_damaging(0.979) TCGA-CN-A63U-01 3 4774803 4774803 G A ITPR1 Missense_Mutation p.R1736H 0.60 deleterious(0.03) probably_damaging(0.996) TCGA-CN-A63U-01 3 51458118 51458118 C G VPRBP Missense_Mutation p.S340T 0.60 tolerated(0.11) benign(0.012) TCGA-CN-A63U-01 3 51673492 51673493 GA - RAD54L2 Frame_Shift_Del p.E640Afs*29 0.35 TCGA-CN-A63U-01 3 57130401 57130401 G A IL17RD 3'UTR 0.24 TCGA-CN-A63U-01 3 7348258 7348258 T G GRM7 Missense_Mutation p.S318A 0.44 tolerated(1) benign(0.005) TCGA-CN-A63U-01 3 89390979 89390979 C A EPHA3 Missense_Mutation p.L349M 0.32 tolerated(0.11) possibly_damaging(0.837) TCGA-CN-A63U-01 3 89462292 89462292 A T EPHA3 Missense_Mutation p.L588F 0.37 tolerated(0.56) benign(0.188) TCGA-CN-A63U-01 3 9514922 9514922 A T SETD5 Silent p.V1066V 0.50 TCGA-CN-A63U-01 4 104066453 104066453 T C CENPE Missense_Mutation p.I1537M 0.44 benign(0.372) TCGA-CN-A63U-01 4 107154148 107154148 C T TBCK Missense_Mutation p.R529K 0.38 tolerated(1) benign(0.01) TCGA-CN-A63U-01 4 110791582 110791582 G A LRIT3 Silent p.V559V 0.32 TCGA-CN-A63U-01 4 110915886 110915886 T C EGF Intron 0.43 TCGA-CN-A63U-01 4 126336448 126336448 A G FAT4 Silent p.G2110G 0.35 TCGA-CN-A63U-01 4 126336742 126336742 A T FAT4 Silent p.T2208T 0.28 TCGA-CN-A63U-01 4 126412471 126412471 G T FAT4 Missense_Mutation p.G4832C 0.24 probably_damaging(1) TCGA-CN-A63U-01 4 141832311 141832311 G C RNF150 Missense_Mutation p.I395M 0.34 tolerated(0.27) benign(0.034) TCGA-CN-A63U-01 4 144135059 144135059 G T USP38 Missense_Mutation p.G644C 0.34 tolerated(0.12) benign(0.003) TCGA-CN-A63U-01 4 146823634 146823634 C A ZNF827 Missense_Mutation p.K259N 0.65 deleterious(0) probably_damaging(0.997) TCGA-CN-A63U-01 4 155278469 155278469 A C DCHS2 Nonsense_Mutation p.Y234* 0.38 TCGA-CN-A63U-01 4 156289639 156289639 C G MAP9 Intron 0.78 TCGA-CN-A63U-01 4 175898404 175898404 C A ADAM29 Missense_Mutation p.F576L 0.55 tolerated(0.29) benign(0.027) TCGA-CN-A63U-01 4 177098223 177098223 G T WDR17 Missense_Mutation p.R1194L 0.47 deleterious(0.04) benign(0.331) TCGA-CN-A63U-01 4 177100753 177100753 G C WDR17 3'UTR 0.26 TCGA-CN-A63U-01 4 189012501 189012501 T A TRIML2 3'UTR 0.59 TCGA-CN-A63U-01 4 22749478 22749478 A G GBA3 Silent p.P282P 0.47 TCGA-CN-A63U-01 4 40440638 40440638 G T RBM47 Missense_Mutation p.F91L 0.56 tolerated(0.17) benign(0.348) TCGA-CN-A63U-01 4 44450171 44450171 A T KCTD8 Missense_Mutation p.F124I 0.56 deleterious(0) probably_damaging(0.977) TCGA-CN-A63U-01 4 55140745 55140745 G A PDGFRA Missense_Mutation p.V536M 0.28 deleterious(0) probably_damaging(0.981) TCGA-CN-A63U-01 4 62935925 62935925 C T LPHN3 Silent p.L1237L 0.42 TCGA-CN-A63U-01 4 66270112 66270112 G T EPHA5 Silent p.I590I 0.31 TCGA-CN-A63U-01 4 69536139 69536139 G A UGT2B15 Silent p.A66A 0.31 TCGA-CN-A63U-01 4 70460339 70460339 G T UGT2A1 Missense_Mutation p.P553H 0.34 deleterious(0) probably_damaging(0.996) TCGA-CN-A63U-01 4 73164080 73164080 T A ADAMTS3 Missense_Mutation p.N835I 0.38 deleterious(0.03) benign(0.078) TCGA-CN-A63U-01 4 88026817 88026817 G T AFF1 Missense_Mutation p.D441Y 0.42 deleterious(0) unknown(0) TCGA-CN-A63U-01 4 90848950 90848950 G A MMRN1 Silent p.V320V 0.35 TCGA-CN-A63U-01 4 951745 951745 G A TMEM175 Missense_Mutation p.A326T 0.14 tolerated(0.32) benign(0.079) TCGA-CN-A63U-01 5 10423871 10423871 G T MARCH6 Missense_Mutation p.A770S 0.14 tolerated(0.21) benign(0.006) TCGA-CN-A63U-01 5 1083862 1083862 A T SLC12A7 Missense_Mutation p.L376Q 0.17 tolerated(0.42) benign(0.004) TCGA-CN-A63U-01 5 114607088 114607088 T C CCDC112 Missense_Mutation p.K385R 0.56 tolerated(0.32) benign(0.071) TCGA-CN-A63U-01 5 1210639 1210639 A T SLC6A19 Missense_Mutation p.N142Y 0.16 deleterious(0) probably_damaging(0.987) TCGA-CN-A63U-01 5 1272362 1272362 G T TERT Silent p.R774R 0.10 TCGA-CN-A63U-01 5 130764823 130764823 C T CTC-432M15.3 Missense_Mutation p.D1568N 0.61 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-CN-A63U-01 5 140536803 140536803 G C PCDHB17 Silent p.A409A 0.71 TCGA-CN-A63U-01 5 140580934 140580934 C A PCDHB11 Missense_Mutation p.F529L 0.64 deleterious_low_confidence(0.02) benign(0.232) TCGA-CN-A63U-01 5 140580935 140580935 C T PCDHB11 Missense_Mutation p.R530C 0.63 deleterious_low_confidence(0.02) benign(0.052) TCGA-CN-A63U-01 5 140755318 140755318 T G PCDHGA6 Missense_Mutation p.N556K 0.63 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-CN-A63U-01 5 140764612 140764612 C T PCDHGA7 Silent p.L716L 0.55 TCGA-CN-A63U-01 5 150911310 150911310 C A FAT2 Missense_Mutation p.V3217L 0.67 benign(0.023) TCGA-CN-A63U-01 5 156485002 156485002 C A HAVCR1 5'UTR 0.55 TCGA-CN-A63U-01 5 157218920 157218920 C A CLINT1 Nonsense_Mutation p.E391* 0.60 TCGA-CN-A63U-01 5 158158152 158158152 G - EBF1 Frame_Shift_Del p.T351Pfs*27 0.30 TCGA-CN-A63U-01 5 176675185 176675185 G T NSD1 Nonsense_Mutation p.E1501* 0.62 TCGA-CN-A63U-01 5 21975224 21975224 T A CDH12 Missense_Mutation p.T168S 0.14 tolerated(1) benign(0) TCGA-CN-A63U-01 5 23509171 23509171 G T PRDM9 Missense_Mutation p.S10I 0.43 deleterious_low_confidence(0) unknown(0) TCGA-CN-A63U-01 5 23527984 23527984 C A PRDM9 3'UTR 0.47 TCGA-CN-A63U-01 5 32088117 32088117 C A PDZD2 Missense_Mutation p.S1521R 0.64 deleterious(0) possibly_damaging(0.793) TCGA-CN-A63U-01 5 33576355 33576355 G T ADAMTS12 Missense_Mutation p.P1259H 0.10 tolerated(0.13) benign(0.274) TCGA-CN-A63U-01 5 35065774 35065774 G T PRLR Missense_Mutation p.S429Y 0.11 deleterious(0) probably_damaging(0.935) TCGA-CN-A63U-01 5 35065775 35065775 A G PRLR Missense_Mutation p.S429P 0.11 tolerated(0.22) benign(0.022) TCGA-CN-A63U-01 5 35712924 35712924 T A SPEF2 Missense_Mutation p.H950Q 0.65 tolerated(0.63) benign(0.024) TCGA-CN-A63U-01 5 37006527 37006527 G A NIPBL Silent p.A1308A 0.63 TCGA-CN-A63U-01 5 37815944 37815944 A G GDNF Missense_Mutation p.C166R 0.11 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 5 41033142 41033142 C T MROH2B Splice_Site p.X787_splice 0.59 TCGA-CN-A63U-01 5 50111284 50111284 G C PARP8 Missense_Mutation p.E532Q 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-CN-A63U-01 5 5303769 5303769 C A ADAMTS16 Missense_Mutation p.P1026T 0.67 deleterious(0.04) possibly_damaging(0.517) TCGA-CN-A63U-01 5 6625745 6625745 G T NSUN2 Silent p.R133R 0.65 TCGA-CN-A63U-01 5 73181874 73181874 G T ARHGEF28 Missense_Mutation p.R1085S 0.55 deleterious(0.02) possibly_damaging(0.742) TCGA-CN-A63U-01 5 75866432 75866432 G C IQGAP2 Missense_Mutation p.D111H 0.59 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 5 82817080 82817080 G A VCAN Silent p.V985V 0.05 TCGA-CN-A63U-01 5 82834903 82834903 C T VCAN Silent p.P2027P 0.61 TCGA-CN-A63U-01 5 82940381 82940381 G C HAPLN1 Missense_Mutation p.D192E 0.64 tolerated(1) benign(0.004) TCGA-CN-A63U-01 5 96339245 96339245 A T LNPEP Missense_Mutation p.N594Y 0.52 tolerated(0.21) possibly_damaging(0.836) TCGA-CN-A63U-01 6 102130436 102130436 T A GRIK2 Silent p.A244A 0.30 TCGA-CN-A63U-01 6 107031225 107031225 G A RTN4IP1 Missense_Mutation p.A354V 0.49 tolerated(0.08) possibly_damaging(0.527) TCGA-CN-A63U-01 6 109995439 109995439 C T AK9 Missense_Mutation p.R48H 0.08 tolerated(0.15) benign(0.005) TCGA-CN-A63U-01 6 112575275 112575275 G C LAMA4 Silent p.S26S 0.28 TCGA-CN-A63U-01 6 114378329 114378329 G T HS3ST5 3'UTR 0.32 TCGA-CN-A63U-01 6 117718215 117718215 G T ROS1 Missense_Mutation p.S214R 0.38 deleterious(0.03) possibly_damaging(0.647) TCGA-CN-A63U-01 6 118596744 118596744 G T SLC35F1 Missense_Mutation p.G254C 0.41 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 6 118606439 118606440 - A SLC35F1 Frame_Shift_Ins p.L314Hfs*55 0.29 TCGA-CN-A63U-01 6 119296323 119296323 G T FAM184A Missense_Mutation p.H878Q 0.26 tolerated(0.42) benign(0.038) TCGA-CN-A63U-01 6 123545262 123545262 C T TRDN Missense_Mutation p.V664I 0.31 deleterious_low_confidence(0.05) benign(0.052) TCGA-CN-A63U-01 6 129799951 129799951 C A LAMA2 Missense_Mutation p.S2522Y 0.35 tolerated(1) benign(0.14) TCGA-CN-A63U-01 6 130763129 130763129 C A TMEM200A 3'UTR 0.29 TCGA-CN-A63U-01 6 142525193 142525193 A G VTA1 Missense_Mutation p.I257V 0.34 tolerated(0.47) benign(0.002) TCGA-CN-A63U-01 6 144837953 144837953 G T UTRN Nonsense_Mutation p.E1804* 0.36 TCGA-CN-A63U-01 6 146268684 146268684 A G SHPRH Missense_Mutation p.L386P 0.39 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 6 146755727 146755727 A T GRM1 Missense_Mutation p.E1127V 0.39 tolerated_low_confidence(0.22) benign(0.058) TCGA-CN-A63U-01 6 147124638 147124638 G T ADGB Intron 0.33 TCGA-CN-A63U-01 6 150157413 150157413 C A LRP11 Missense_Mutation p.V354L 0.30 deleterious(0.02) benign(0.056) TCGA-CN-A63U-01 6 150157414 150157414 C T LRP11 Missense_Mutation p.M353I 0.30 tolerated(0.49) benign(0.114) TCGA-CN-A63U-01 6 152453256 152453256 C A SYNE1 Splice_Site p.X8698_splice 0.27 TCGA-CN-A63U-01 6 152638075 152638075 A T SYNE1 Nonsense_Mutation p.L5540* 0.38 TCGA-CN-A63U-01 6 152644659 152644659 G C SYNE1 Missense_Mutation p.P5291A 0.23 benign(0.008) TCGA-CN-A63U-01 6 160670390 160670390 G T SLC22A2 Silent p.R234R 0.30 TCGA-CN-A63U-01 6 161587367 161587367 C T AGPAT4 Silent p.K87K 0.40 TCGA-CN-A63U-01 6 167571176 167571176 C A GPR31 Silent p.P48P 0.27 TCGA-CN-A63U-01 6 25551136 25551136 A T LRRC16A Splice_Site p.X777_splice 0.36 TCGA-CN-A63U-01 6 26043824 26043824 T A HIST1H2BB Missense_Mutation p.K21M 0.36 deleterious_low_confidence(0.01) benign(0.105) TCGA-CN-A63U-01 6 26197415 26197415 C A HIST1H3D Missense_Mutation p.A22S 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.811) TCGA-CN-A63U-01 6 29012785 29012785 A T OR2W1 Missense_Mutation p.H56Q 0.39 tolerated(0.1) benign(0.004) TCGA-CN-A63U-01 6 2949295 2949295 C A SERPINB6 Missense_Mutation p.E194D 0.34 tolerated(0.3) benign(0.201) TCGA-CN-A63U-01 6 29761635 29761635 G A HLA-V Intron 0.15 TCGA-CN-A63U-01 6 32157637 32157637 C G PBX2 Missense_Mutation p.G19A 0.33 tolerated_low_confidence(0.06) unknown(0) TCGA-CN-A63U-01 6 33156797 33156797 G C COL11A2 Missense_Mutation p.P134R 0.27 benign(0.352) TCGA-CN-A63U-01 6 36742828 36742828 T A CPNE5 Missense_Mutation p.H216L 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-CN-A63U-01 6 36742829 36742829 G T CPNE5 Missense_Mutation p.H216N 0.23 deleterious(0) benign(0.156) TCGA-CN-A63U-01 6 39832218 39832218 G T DAAM2 Missense_Mutation p.D90Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 6 39893453 39893453 C T MOCS1 Silent p.P129P 0.24 TCGA-CN-A63U-01 6 43220480 43220480 A T TTBK1 Nonsense_Mutation p.K38* 0.45 TCGA-CN-A63U-01 6 46190881 46190881 G A RCAN2 Silent p.N243N 0.39 TCGA-CN-A63U-01 6 46657029 46657029 G T TDRD6 Missense_Mutation p.W388C 0.36 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 6 47221257 47221257 C T TNFRSF21 Missense_Mutation p.G415D 0.29 deleterious(0) probably_damaging(0.984) TCGA-CN-A63U-01 6 47681656 47681656 C A GPR115 Silent p.L225L 0.30 TCGA-CN-A63U-01 6 55223853 55223853 A G GFRAL Missense_Mutation p.Q290R 0.35 tolerated(0.11) benign(0.049) TCGA-CN-A63U-01 6 64422299 64422299 G T PHF3 Missense_Mutation p.L1605F 0.37 tolerated(0.05) possibly_damaging(0.453) TCGA-CN-A63U-01 6 70926676 70926676 A T COL9A1 Missense_Mutation p.L897H 0.36 probably_damaging(0.962) TCGA-CN-A63U-01 6 76024585 76024585 C T FILIP1 Silent p.L321L 0.29 TCGA-CN-A63U-01 6 80198927 80198927 G C LCA5 Missense_Mutation p.Q369E 0.27 tolerated(1) benign(0) TCGA-CN-A63U-01 6 94066616 94066616 G T EPHA7 Silent p.P381P 0.34 TCGA-CN-A63U-01 6 94120101 94120101 T A EPHA7 Intron 0.53 TCGA-CN-A63U-01 7 100084787 100084787 C - NYAP1 Frame_Shift_Del p.S140Afs*63 0.36 TCGA-CN-A63U-01 7 100681213 100681213 G T MUC17 Silent p.V2172V 0.43 TCGA-CN-A63U-01 7 100683806 100683806 C T MUC17 Missense_Mutation p.P3037S 0.41 probably_damaging(0.99) TCGA-CN-A63U-01 7 100696663 100696663 G A MUC17 Missense_Mutation p.D4437N 0.28 unknown(0) TCGA-CN-A63U-01 7 103243844 103243844 C T RELN Silent p.E1080E 0.37 TCGA-CN-A63U-01 7 112102225 112102225 A T IFRD1 Missense_Mutation p.K263M 0.28 tolerated(0.18) benign(0.029) TCGA-CN-A63U-01 7 121942294 121942294 G T FEZF1 Missense_Mutation p.N395K 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-CN-A63U-01 7 128852125 128852125 G T SMO Missense_Mutation p.V733F 0.22 deleterious_low_confidence(0.01) benign(0.075) TCGA-CN-A63U-01 7 129950685 129950685 G T CPA4 Silent p.S284S 0.23 TCGA-CN-A63U-01 7 130008366 130008366 C A CPA5 Silent p.I413I 0.25 TCGA-CN-A63U-01 7 131815313 131815313 G A PLXNA4 Silent p.H1870H 0.26 TCGA-CN-A63U-01 7 137150721 137150721 T C DGKI Missense_Mutation p.M857V 0.19 tolerated(0.1) benign(0.009) TCGA-CN-A63U-01 7 137255999 137255999 T A DGKI Silent p.P623P 0.23 TCGA-CN-A63U-01 7 138964104 138964104 A T UBN2 Nonsense_Mutation p.K689* 0.16 TCGA-CN-A63U-01 7 140373568 140373588 CAAACTGGGCCAGTGGGCCAG - ADCK2 In_Frame_Del p.K147_S153del 0.25 TCGA-CN-A63U-01 7 141619579 141619579 C - OR9A4 Frame_Shift_Del p.R302Gfs*4 0.28 TCGA-CN-A63U-01 7 142139730 142139730 A G TRBV7-6 Missense_Mutation p.L14P 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-CN-A63U-01 7 142176768 142176768 C A TRBV7-4 Missense_Mutation p.W8L 0.26 deleterious(0.04) benign(0.137) TCGA-CN-A63U-01 7 142997027 142997027 G C CASP2 Missense_Mutation p.E253D 0.19 tolerated(0.28) benign(0.01) TCGA-CN-A63U-01 7 143632975 143632975 C A OR2F2 Missense_Mutation p.S217Y 0.32 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 7 149482235 149482235 C A SSPO RNA 0.47 TCGA-CN-A63U-01 7 149482236 149482236 T A SSPO RNA 0.47 TCGA-CN-A63U-01 7 149524900 149524900 G C SSPO RNA 0.36 TCGA-CN-A63U-01 7 150493555 150493555 G T TMEM176B Missense_Mutation p.Q35K 0.15 tolerated(0.14) benign(0.327) TCGA-CN-A63U-01 7 150501523 150501523 T A TMEM176A Missense_Mutation p.L210Q 0.44 deleterious(0) probably_damaging(0.977) TCGA-CN-A63U-01 7 150815625 150815625 A T AGAP3 Missense_Mutation p.Q292L 0.47 tolerated(0.09) benign(0.009) TCGA-CN-A63U-01 7 24727333 24727333 G T MPP6 3'UTR 0.55 TCGA-CN-A63U-01 7 30695280 30695280 G T CRHR2 Nonsense_Mutation p.Y350* 0.52 TCGA-CN-A63U-01 7 34981467 34981467 T C DPY19L1 Silent p.A460A 0.54 TCGA-CN-A63U-01 7 44147650 44147650 G T AEBP1 Missense_Mutation p.G303C 0.73 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-CN-A63U-01 7 55755579 55755579 G C RNU6-389P 3'Flank 0.56 TCGA-CN-A63U-01 7 55874936 55874936 T C SEPT14 Missense_Mutation p.H278R 0.55 deleterious(0) possibly_damaging(0.876) TCGA-CN-A63U-01 7 64442441 64442441 T C ZNF117 5'UTR 0.44 TCGA-CN-A63U-01 7 64498796 64498796 G T CCT6P3 RNA 0.20 TCGA-CN-A63U-01 7 78150894 78150894 T C MAGI2 Missense_Mutation p.I203V 0.20 tolerated(0.9) benign(0.085) TCGA-CN-A63U-01 7 82544969 82544969 C A PCLO Missense_Mutation p.E4111D 0.19 unknown(0) TCGA-CN-A63U-01 7 82585680 82585680 C A PCLO Missense_Mutation p.R1530I 0.29 unknown(0) TCGA-CN-A63U-01 7 86415962 86415962 T C GRM3 Missense_Mutation p.I285T 0.43 deleterious(0) benign(0.291) TCGA-CN-A63U-01 7 86479803 86479803 C A GRM3 Missense_Mutation p.H837N 0.19 tolerated(0.05) possibly_damaging(0.589) TCGA-CN-A63U-01 7 86544177 86544177 C A KIAA1324L Splice_Site p.X532_splice 0.26 TCGA-CN-A63U-01 7 87133630 87133634 GATGC - ABCB1 Frame_Shift_Del p.H1257Afs*31 0.14 TCGA-CN-A63U-01 7 87765302 87765302 T A ADAM22 Nonsense_Mutation p.C392* 0.37 TCGA-CN-A63U-01 7 88964093 88964093 G A ZNF804B Silent p.E599E 0.41 TCGA-CN-A63U-01 7 88965519 88965519 G C ZNF804B Missense_Mutation p.G1075R 0.44 deleterious(0.02) possibly_damaging(0.601) TCGA-CN-A63U-01 7 94540062 94540062 G A PPP1R9A Missense_Mutation p.D213N 0.46 deleterious(0) possibly_damaging(0.753) TCGA-CN-A63U-01 7 94993271 94993271 C G PON3 Missense_Mutation p.R200P 0.24 tolerated(0.43) benign(0.019) TCGA-CN-A63U-01 7 98256641 98256641 C A NPTX2 Silent p.I351I 0.09 TCGA-CN-A63U-01 8 105261717 105261717 G T RIMS2 Missense_Mutation p.D1198Y 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-A63U-01 8 105503749 105503749 G T LRP12 Missense_Mutation p.L578M 0.56 tolerated(0.08) probably_damaging(0.999) TCGA-CN-A63U-01 8 109260897 109260897 T G EIF3E Missense_Mutation p.H12P 0.49 tolerated(1) benign(0.001) TCGA-CN-A63U-01 8 121293232 121293232 C T COL14A1 Missense_Mutation p.P1253L 0.40 deleterious(0) probably_damaging(0.995) TCGA-CN-A63U-01 8 125052131 125052131 G A FER1L6 Missense_Mutation p.V825I 0.14 tolerated(0.44) benign(0.001) TCGA-CN-A63U-01 8 12956894 12956894 C A DLC1 Missense_Mutation p.R984S 0.54 deleterious(0) probably_damaging(0.954) TCGA-CN-A63U-01 8 12957281 12957281 G T DLC1 Missense_Mutation p.N855K 0.41 tolerated(0.24) benign(0.021) TCGA-CN-A63U-01 8 133899343 133899343 G - TG Frame_Shift_Del p.E576Nfs*20 0.14 TCGA-CN-A63U-01 8 139706751 139706751 C A COL22A1 Silent p.P900P 0.41 TCGA-CN-A63U-01 8 142482981 142482981 A T MROH5 3'UTR 0.46 TCGA-CN-A63U-01 8 143845988 143845988 G T LYNX1 3'UTR 0.24 TCGA-CN-A63U-01 8 144687915 144687915 G C PYCRL Silent p.A272A 0.11 TCGA-CN-A63U-01 8 18725278 18725278 C T PSD3 Missense_Mutation p.V514M 0.43 tolerated(0.1) benign(0.051) TCGA-CN-A63U-01 8 22273316 22273316 C T SLC39A14 Missense_Mutation p.S262L 0.17 tolerated(0.3) benign(0.082) TCGA-CN-A63U-01 8 25365275 25365275 T C CDCA2 3'UTR 0.32 TCGA-CN-A63U-01 8 2855679 2855679 G C CSMD1 Missense_Mutation p.P2744R 0.35 probably_damaging(1) TCGA-CN-A63U-01 8 35631840 35631841 - T UNC5D Frame_Shift_Ins p.A836Rfs*31 0.14 TCGA-CN-A63U-01 8 35648093 35648093 C A UNC5D 3'UTR 0.52 TCGA-CN-A63U-01 8 38021207 38021207 T C LSM1 Missense_Mutation p.D128G 0.41 tolerated(0.07) benign(0.034) TCGA-CN-A63U-01 8 40532344 40532344 G T ZMAT4 Silent p.A152A 0.23 TCGA-CN-A63U-01 8 41553999 41553999 G T ANK1 Missense_Mutation p.R989S 0.24 deleterious(0) probably_damaging(0.985) TCGA-CN-A63U-01 8 49647752 49647752 G T EFCAB1 5'UTR 0.43 TCGA-CN-A63U-01 8 65494139 65494139 G C BHLHE22 Missense_Mutation p.E264D 0.20 tolerated(0.13) benign(0.19) TCGA-CN-A63U-01 8 70541742 70541742 G T SULF1 Missense_Mutation p.E704D 0.23 tolerated(0.2) benign(0.027) TCGA-CN-A63U-01 8 70744247 70744247 G T SLCO5A1 Missense_Mutation p.P221H 0.24 deleterious(0) probably_damaging(0.95) TCGA-CN-A63U-01 8 77616489 77616489 C A ZFHX4 Missense_Mutation p.R56S 0.42 possibly_damaging(0.555) TCGA-CN-A63U-01 9 107267262 107267262 C G OR13F1 Missense_Mutation p.T240R 0.07 deleterious(0) probably_damaging(0.984) TCGA-CN-A63U-01 9 119903718 119903718 A G ASTN2 Intron 0.60 TCGA-CN-A63U-01 9 121930047 121930047 C A BRINP1 Missense_Mutation p.R534L 0.37 deleterious(0.01) probably_damaging(0.931) TCGA-CN-A63U-01 9 131351145 131351145 G T SPTAN1 Missense_Mutation p.D977Y 0.57 deleterious(0) probably_damaging(0.992) TCGA-CN-A63U-01 9 133760654 133760654 G C ABL1 Missense_Mutation p.A1012P 0.55 tolerated_low_confidence(0.15) benign(0.009) TCGA-CN-A63U-01 9 136726538 136726538 G C VAV2 Missense_Mutation p.S113W 0.28 deleterious(0) probably_damaging(0.985) TCGA-CN-A63U-01 9 140459467 140459467 C G DPH7 Intron 0.53 TCGA-CN-A63U-01 9 27948627 27948627 G T LINGO2 3'UTR 0.50 TCGA-CN-A63U-01 9 32632985 32632985 G T TAF1L Missense_Mutation p.L865I 0.33 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 9 34371054 34371054 C G KIAA1161 Missense_Mutation p.G596R 0.36 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 9 35093918 35093918 G C PIGO Missense_Mutation p.S253R 0.52 tolerated(0.13) possibly_damaging(0.653) TCGA-CN-A63U-01 9 37357174 37357174 A G ZCCHC7 Missense_Mutation p.K514R 0.34 tolerated(0.23) benign(0.022) TCGA-CN-A63U-01 9 43627664 43627664 C A SPATA31A6 Missense_Mutation p.W341C 0.55 deleterious(0) possibly_damaging(0.849) TCGA-CN-A63U-01 9 6587274 6587274 A G GLDC Missense_Mutation p.W573R 0.70 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 9 70490056 70490056 C T CBWD5 Missense_Mutation p.V5I 0.29 tolerated_low_confidence(0.74) benign(0.003) TCGA-CN-A63U-01 9 71606169 71606169 A G PIP5K1B Missense_Mutation p.Y539C 0.18 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-CN-A63U-01 9 72521027 72521027 C T C9orf135 Missense_Mutation p.T222I 0.18 deleterious(0.01) possibly_damaging(0.624) TCGA-CN-A63U-01 9 74324291 74324291 C A TMEM2 Missense_Mutation p.V957L 0.42 tolerated(0.08) benign(0.145) TCGA-CN-A63U-01 9 79320286 79320286 T G PRUNE2 Missense_Mutation p.S2302R 0.49 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 9 80046236 80046236 C A GNA14 Splice_Site p.X198_splice 0.42 TCGA-CN-A63U-01 9 8341964 8341964 C G PTPRD Missense_Mutation p.R1559P 0.55 deleterious(0) probably_damaging(1) TCGA-CN-A63U-01 9 8492937 8492937 G A PTPRD Missense_Mutation p.L798F 0.55 tolerated(0.42) benign(0.003) TCGA-CN-A63U-01 9 85905587 85905587 T A FRMD3 Missense_Mutation p.N376Y 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-CN-A63U-01 9 96021458 96021458 T C WNK2 Silent p.I876I 0.45 TCGA-CN-A63U-01 X 123779052 123779052 G A TENM1 Missense_Mutation p.T606I 0.73 tolerated(0.38) benign(0.058) TCGA-CN-A63U-01 X 137717804 137717804 G T FGF13 Missense_Mutation p.P149T 0.60 tolerated(0.07) benign(0.05) TCGA-CN-A63U-01 X 140984864 140984864 T C MAGEC3 Silent p.A440A 0.54 TCGA-CN-A63U-01 X 140995990 140995990 A G MAGEC1 Missense_Mutation p.M934V 0.71 deleterious(0.01) unknown(0) TCGA-CN-A63U-01 X 142716365 142716365 T A SLITRK4 3'UTR 0.93 TCGA-CN-A63U-01 X 151303506 151303506 G A MAGEA10 Missense_Mutation p.P196L 0.72 deleterious(0.02) probably_damaging(0.972) TCGA-CN-A63U-01 X 153706257 153706257 C A LAGE3 3'UTR 0.80 TCGA-CN-A63U-01 X 15619049 15619049 C G ACE2 5'UTR 0.73 TCGA-CN-A63U-01 X 17743958 17743958 G T NHS Nonsense_Mutation p.E557* 0.67 TCGA-CN-A63U-01 X 26158077 26158077 T C MAGEB18 Silent p.A325A 0.80 TCGA-CN-A63U-01 X 34962224 34962224 G T FAM47B Nonsense_Mutation p.E426* 0.67 TCGA-CN-A63U-01 X 37985955 37985955 G A SYTL5 Missense_Mutation p.R744H 0.48 deleterious(0) probably_damaging(0.999) TCGA-CN-A63U-01 X 50052792 50052792 G T CCNB3 Missense_Mutation p.E541D 0.73 tolerated(0.56) benign(0.025) TCGA-CN-A63U-01 X 50053214 50053214 A G CCNB3 Missense_Mutation p.H682R 0.60 tolerated(0.36) benign(0.268) TCGA-CN-A63U-01 X 50350814 50350815 CC A SHROOM4 Frame_Shift_Del p.W1109Cfs*72 0.51 TCGA-CN-A63U-01 X 55287042 55287042 C A PAGE3 Missense_Mutation p.G82C 0.50 tolerated(0.14) probably_damaging(0.995) TCGA-CN-A63U-01 X 57337061 57337061 A T FAAH2 Missense_Mutation p.D104V 0.66 deleterious(0.01) probably_damaging(1) TCGA-CN-A63U-01 X 65486287 65486287 C - HEPH Frame_Shift_Del p.R1140Efs*8 0.50 TCGA-CN-A63U-01 X 67939133 67939133 C A STARD8 Silent p.I594I 0.71 TCGA-CN-A63U-01 X 86773076 86773076 C T KLHL4 Silent p.N60N 0.68 TCGA-CN-A63U-01 Y 16942158 16942158 G A NLGN4Y Missense_Mutation p.V454M 0.62 deleterious(0.02) probably_damaging(0.998) TCGA-CN-A63V-01 10 51580587 51580587 G A NCOA4 Missense_Mutation p.R74H 0.15 deleterious(0.04) benign(0.219) TCGA-CN-A63V-01 11 105923623 105923623 T G KBTBD3 Missense_Mutation p.Q598P 0.10 tolerated(0.13) benign(0.124) TCGA-CN-A63V-01 11 1269115 1269115 G A MUC5B Missense_Mutation p.G3669S 0.10 unknown(0) TCGA-CN-A63V-01 11 18631607 18631607 C A SPTY2D1 Intron 0.40 TCGA-CN-A63V-01 11 51411686 51411686 C A OR4A5 Missense_Mutation p.C237F 0.13 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CN-A63V-01 11 534289 534289 C T HRAS Missense_Mutation p.G12S 0.13 deleterious(0.02) possibly_damaging(0.525) TCGA-CN-A63V-01 11 55681455 55681455 C T OR5W2 Missense_Mutation p.V202I 0.09 tolerated(0.93) benign(0.019) TCGA-CN-A63V-01 11 68312482 68312482 A T PPP6R3 Missense_Mutation p.K135I 0.07 deleterious(0) possibly_damaging(0.745) TCGA-CN-A63V-01 11 77301070 77301072 GCA - AQP11 In_Frame_Del p.Q12del 0.24 TCGA-CN-A63V-01 12 10279991 10279991 G A CLEC7A Intron 0.23 TCGA-CN-A63V-01 12 108620880 108620880 G A WSCD2 Silent p.A306A 0.16 TCGA-CN-A63V-01 12 126138806 126138806 A T TMEM132B Missense_Mutation p.K929N 0.08 deleterious(0) probably_damaging(0.999) TCGA-CN-A63V-01 12 13716227 13716227 G A GRIN2B Silent p.A1315A 0.15 TCGA-CN-A63V-01 12 23696176 23696176 G A SOX5 Silent p.D580D 0.15 TCGA-CN-A63V-01 13 26959417 26959417 T C CDK8 Missense_Mutation p.V195A 0.17 deleterious(0) possibly_damaging(0.835) TCGA-CN-A63V-01 13 79189852 79189852 G C RNF219 Missense_Mutation p.L682V 0.22 tolerated_low_confidence(0.1) benign(0.065) TCGA-CN-A63V-01 13 88328944 88328944 G A SLITRK5 Missense_Mutation p.G434E 0.08 deleterious(0.04) probably_damaging(0.989) TCGA-CN-A63V-01 14 102898197 102898197 G T TECPR2 Silent p.L383L 0.05 TCGA-CN-A63V-01 14 106054585 106054585 C A IGHA2 Missense_Mutation p.A50S 0.13 tolerated(0.07) benign(0.06) TCGA-CN-A63V-01 14 23444276 23444276 C T AJUBA Missense_Mutation p.C426Y 0.15 deleterious(0) benign(0.043) TCGA-CN-A63V-01 14 24780140 24780141 - CA LTB4R2 Frame_Shift_Ins p.Q91Hfs*93 0.08 TCGA-CN-A63V-01 15 23811363 23811363 C T MKRN3 Missense_Mutation p.T145M 0.09 tolerated(0.29) benign(0.006) TCGA-CN-A63V-01 15 85345396 85345396 G A ZNF592 Silent p.A1192A 0.18 TCGA-CN-A63V-01 16 31097782 31097782 C T PRSS53 Missense_Mutation p.R180H 0.21 tolerated(0.1) benign(0.209) TCGA-CN-A63V-01 17 263918 263918 C T C17orf97 3'UTR 0.11 TCGA-CN-A63V-01 17 55946537 55946537 G A CUEDC1 Missense_Mutation p.P296S 0.17 tolerated(0.8) benign(0.002) TCGA-CN-A63V-01 17 58967129 58967129 C G BCAS3 Missense_Mutation p.N245K 0.16 tolerated(1) benign(0.054) TCGA-CN-A63V-01 17 72948430 72948430 G A HID1 Missense_Mutation p.P693L 0.10 deleterious(0) probably_damaging(1) TCGA-CN-A63V-01 18 50278661 50278661 C T DCC Missense_Mutation p.P110L 0.11 deleterious(0) benign(0.313) TCGA-CN-A63V-01 18 5891942 5891942 C A TMEM200C Missense_Mutation p.V41L 0.15 deleterious(0) probably_damaging(0.935) TCGA-CN-A63V-01 19 10265093 10265093 G A DNMT1 Missense_Mutation p.T632M 0.42 deleterious(0) probably_damaging(0.993) TCGA-CN-A63V-01 19 11141427 11141427 G A SMARCA4 Missense_Mutation p.R1135Q 0.35 probably_damaging(0.999) TCGA-CN-A63V-01 19 44778750 44778750 A C ZNF233 Missense_Mutation p.K646T 0.42 deleterious(0) probably_damaging(0.999) TCGA-CN-A63V-01 19 54544333 54544333 G A VSTM1 Missense_Mutation p.T198M 0.26 deleterious(0.03) possibly_damaging(0.451) TCGA-CN-A63V-01 19 622886 622886 G A POLRMT Missense_Mutation p.R464W 0.42 tolerated(0.07) benign(0.006) TCGA-CN-A63V-01 19 9003333 9003333 C T MUC16 Missense_Mutation p.V13368I 0.39 possibly_damaging(0.882) TCGA-CN-A63V-01 1 110466000 110466000 C T CSF1 Missense_Mutation p.P253S 0.24 tolerated(0.12) benign(0.153) TCGA-CN-A63V-01 1 111146157 111146157 G A KCNA2 Silent p.F416F 0.16 TCGA-CN-A63V-01 1 155450764 155450764 C A ASH1L Missense_Mutation p.V633L 0.10 tolerated_low_confidence(1) benign(0) TCGA-CN-A63V-01 1 160607290 160607290 G T SLAMF1 Missense_Mutation p.L36I 0.10 tolerated(0.56) benign(0.016) TCGA-CN-A63V-01 1 161138364 161138364 C A PPOX Missense_Mutation p.A205E 0.14 tolerated(0.23) benign(0.102) TCGA-CN-A63V-01 1 173952657 173952657 C T RC3H1 Missense_Mutation p.R164Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-CN-A63V-01 1 176760546 176760546 C T PAPPA2 Nonsense_Mutation p.Q1650* 0.07 TCGA-CN-A63V-01 1 186957696 186957696 G A PLA2G4A 3'UTR 0.10 TCGA-CN-A63V-01 1 19612764 19612764 C T AKR7A3 Missense_Mutation p.R106Q 0.16 tolerated(0.32) benign(0.002) TCGA-CN-A63V-01 1 27190360 27190363 CATG - SFN Frame_Shift_Del p.M220Sfs*7 0.14 TCGA-CN-A63V-01 1 32377362 32377362 T A PTP4A2 Missense_Mutation p.L85F 0.14 deleterious(0) probably_damaging(1) TCGA-CN-A63V-01 1 3599708 3599708 C T TP73 Silent p.D50D 0.14 TCGA-CN-A63V-01 1 41483450 41483450 G A SLFNL1 Missense_Mutation p.R272C 0.11 deleterious(0.04) benign(0.056) TCGA-CN-A63V-01 1 55175809 55175809 C T MROH7 Silent p.R1307R 0.12 TCGA-CN-A63V-01 1 66067341 66067341 C T LEPR Missense_Mutation p.R421C 0.15 deleterious(0) probably_damaging(0.971) TCGA-CN-A63V-01 1 92528795 92528795 C T EPHX4 Silent p.N347N 0.17 TCGA-CN-A63V-01 20 3295768 3295768 C T C20orf194 Splice_Site p.X531_splice 0.17 TCGA-CN-A63V-01 20 61597910 61597910 G A SLC17A9 Silent p.P365P 0.21 TCGA-CN-A63V-01 21 33065709 33065709 G A SCAF4 Nonsense_Mutation p.R471* 0.14 TCGA-CN-A63V-01 21 33068512 33068512 G A SCAF4 Nonsense_Mutation p.Q328* 0.17 TCGA-CN-A63V-01 22 26423673 26423673 G T MYO18B Intron 0.21 TCGA-CN-A63V-01 2 170489726 170489726 C A PPIG Missense_Mutation p.S329Y 0.20 deleterious(0) unknown(0) TCGA-CN-A63V-01 2 179528398 179528398 G A TTN Missense_Mutation p.A12163V 0.13 TCGA-CN-A63V-01 2 179605415 179605415 T C TTN Missense_Mutation p.E4182G 0.23 TCGA-CN-A63V-01 2 1843078 1843078 C T MYT1L Missense_Mutation p.A973T 0.15 deleterious(0) probably_damaging(0.999) TCGA-CN-A63V-01 2 240003803 240003803 C A HDAC4 Missense_Mutation p.D878Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-CN-A63V-01 2 79971609 79971609 G A CTNNA2 Missense_Mutation p.A67T 0.09 tolerated(0.05) probably_damaging(0.93) TCGA-CN-A63V-01 3 127786268 127786268 C T SEC61A1 Missense_Mutation p.T327M 0.13 tolerated(0.29) benign(0.008) TCGA-CN-A63V-01 3 172835185 172835185 G T SPATA16 Missense_Mutation p.P113T 0.12 tolerated(0.09) possibly_damaging(0.803) TCGA-CN-A63V-01 3 180688142 180688142 G T FXR1 Silent p.G533G 0.09 TCGA-CN-A63V-01 3 44636019 44636019 G - ZNF660 Frame_Shift_Del p.K113Nfs*117 0.13 TCGA-CN-A63V-01 3 57557905 57557905 T C ARF4 3'UTR 0.17 TCGA-CN-A63V-01 4 10083028 10083028 C T WDR1 Missense_Mutation p.V413I 0.14 tolerated(0.26) benign(0.009) TCGA-CN-A63V-01 4 134071698 134071698 G A PCDH10 Missense_Mutation p.A135T 0.18 deleterious(0) probably_damaging(0.996) TCGA-CN-A63V-01 4 169315637 169315637 G A DDX60L Silent p.L1263L 0.12 TCGA-CN-A63V-01 4 39245929 39245929 G A WDR19 Missense_Mutation p.R828H 0.10 deleterious(0) probably_damaging(0.99) TCGA-CN-A63V-01 4 47034444 47034444 C T GABRB1 Silent p.V61V 0.16 TCGA-CN-A63V-01 5 125813462 125813462 G T GRAMD3 Missense_Mutation p.A204S 0.15 tolerated(0.22) benign(0.026) TCGA-CN-A63V-01 5 131329909 131329909 G A ACSL6 Nonsense_Mutation p.Q29* 0.20 TCGA-CN-A63V-01 5 149459795 149459795 C T CSF1R Missense_Mutation p.V138I 0.14 tolerated(0.27) benign(0.065) TCGA-CN-A63V-01 5 178562959 178562959 C T ADAMTS2 Missense_Mutation p.R679H 0.13 deleterious(0.03) benign(0.066) TCGA-CN-A63V-01 5 43506091 43506091 G A C5orf34 Missense_Mutation p.H231Y 0.10 tolerated(1) benign(0.003) TCGA-CN-A63V-01 6 130166922 130166922 C T TMEM244 Missense_Mutation p.V37M 0.11 tolerated(0.28) benign(0.002) TCGA-CN-A63V-01 6 146350827 146350827 G A GRM1 Silent p.P58P 0.13 TCGA-CN-A63V-01 6 27777869 27777869 G T HIST1H3H Missense_Mutation p.Q6H 0.10 deleterious_low_confidence(0.01) benign(0.01) TCGA-CN-A63V-01 6 38775449 38775449 C T DNAH8 Missense_Mutation p.R855W 0.12 possibly_damaging(0.893) TCGA-CN-A63V-01 6 6145758 6145758 C A F13A1 3'UTR 0.32 TCGA-CN-A63V-01 6 74135219 74135219 A G MB21D1 Missense_Mutation p.S434P 0.21 deleterious(0.01) possibly_damaging(0.612) TCGA-CN-A63V-01 7 100676343 100676343 G A MUC17 Missense_Mutation p.S549N 0.27 possibly_damaging(0.837) TCGA-CN-A63V-01 7 101892219 101892219 G A CUX1 Missense_Mutation p.R1483H 0.14 deleterious(0.04) benign(0.153) TCGA-CN-A63V-01 7 102580025 102580025 C T LRRC17 Silent p.I307I 0.11 TCGA-CN-A63V-01 7 129410237 129410237 C T MIR182 RNA 0.06 TCGA-CN-A63V-01 7 142206745 142206745 T G TRBV10-2 Missense_Mutation p.Q37P 0.17 deleterious(0.05) benign(0.006) TCGA-CN-A63V-01 7 148907754 148907754 C T ZNF282 Missense_Mutation p.R304W 0.20 deleterious(0.03) possibly_damaging(0.857) TCGA-CN-A63V-01 7 151800369 151800369 G T GALNT11 Intron 0.14 TCGA-CN-A63V-01 7 82764239 82764239 G A PCLO Missense_Mutation p.P876L 0.16 unknown(0) TCGA-CN-A63V-01 8 12958063 12958063 G A DLC1 Missense_Mutation p.R595C 0.12 deleterious(0.03) possibly_damaging(0.677) TCGA-CN-A63V-01 8 133196535 133196535 C A KCNQ3 Missense_Mutation p.G186V 0.13 deleterious(0) probably_damaging(1) TCGA-CN-A63V-01 8 144650361 144650361 A G MROH6 Missense_Mutation p.V572A 0.17 tolerated(0.14) benign(0.384) TCGA-CN-A63V-01 8 20107511 20107511 C T LZTS1 Missense_Mutation p.E505K 0.11 deleterious(0.04) possibly_damaging(0.45) TCGA-CN-A63V-01 8 3267060 3267060 G C CSMD1 Missense_Mutation p.F543L 0.29 possibly_damaging(0.729) TCGA-CN-A63V-01 8 40554763 40554763 C T ZMAT4 Splice_Site p.X117_splice 0.08 TCGA-CN-A63V-01 9 14808085 14808085 C G FREM1 Missense_Mutation p.V981L 0.19 deleterious(0.01) benign(0.373) TCGA-CN-A63V-01 9 72006659 72006659 G A FAM189A2 Missense_Mutation p.R431Q 0.18 tolerated(1) benign(0.003) TCGA-CN-A63V-01 9 95004436 95004436 C G IARS Missense_Mutation p.Q1059H 0.16 tolerated(0.05) possibly_damaging(0.737) TCGA-CN-A63V-01 X 70367763 70367763 G A NLGN3 Missense_Mutation p.R55Q 0.44 tolerated(0.1) possibly_damaging(0.821) TCGA-CN-A63W-01 10 105362864 105362864 G C SH3PXD2A Missense_Mutation p.S676C 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.83) TCGA-CN-A63W-01 10 112361903 112361903 G T SMC3 Silent p.R1024R 0.74 TCGA-CN-A63W-01 10 11330515 11330515 G T CELF2 Missense_Mutation p.V326L 0.41 tolerated(0.7) benign(0.007) TCGA-CN-A63W-01 10 11523903 11523903 G A USP6NL Missense_Mutation p.S332F 0.43 deleterious(0.01) probably_damaging(0.951) TCGA-CN-A63W-01 10 123842196 123842196 G T TACC2 Missense_Mutation p.A61S 0.45 benign(0.048) TCGA-CN-A63W-01 10 124395562 124395562 A T DMBT1 Missense_Mutation p.S2073C 0.71 deleterious(0.02) probably_damaging(0.937) TCGA-CN-A63W-01 10 17113555 17113555 A T CUBN Missense_Mutation p.F832Y 0.72 tolerated(1) benign(0.002) TCGA-CN-A63W-01 10 26506860 26506860 G A GAD2 Missense_Mutation p.D76N 0.31 tolerated_low_confidence(1) benign(0) TCGA-CN-A63W-01 10 26789884 26789884 A G APBB1IP Silent p.L99L 0.22 TCGA-CN-A63W-01 10 323371 323371 A T DIP2C Missense_Mutation p.I1522N 0.53 deleterious(0) benign(0.276) TCGA-CN-A63W-01 10 45467284 45467284 G T RASSF4 Silent p.L42L 0.94 TCGA-CN-A63W-01 10 47943621 47943621 C T FAM21B Missense_Mutation p.P915L 0.13 deleterious(0.04) probably_damaging(0.991) TCGA-CN-A63W-01 10 50819629 50819629 C A SLC18A3 Silent p.P281P 0.74 TCGA-CN-A63W-01 10 51465411 51465411 C G AGAP7 Missense_Mutation p.G349R 0.20 deleterious(0) probably_damaging(0.953) TCGA-CN-A63W-01 10 56138609 56138609 C A PCDH15 Missense_Mutation p.W84L 0.49 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CN-A63W-01 10 63829551 63829551 T C ARID5B Silent p.Y398Y 0.20 TCGA-CN-A63W-01 10 64573804 64573804 G A EGR2 Silent p.S198S 0.82 TCGA-CN-A63W-01 10 64973285 64973285 G A JMJD1C Missense_Mutation p.S881F 0.52 deleterious(0) possibly_damaging(0.882) TCGA-CN-A63W-01 10 71912347 71912347 C T SAR1A Missense_Mutation p.G161E 0.68 tolerated(0.06) possibly_damaging(0.549) TCGA-CN-A63W-01 10 76868851 76868851 A G DUSP13 Missense_Mutation p.L22P 0.53 tolerated(0.25) benign(0.216) TCGA-CN-A63W-01 10 88477870 88477870 T A LDB3 Missense_Mutation p.L614Q 0.82 deleterious(0.04) benign(0.265) TCGA-CN-A63W-01 10 99969345 99969345 A G R3HCC1L Missense_Mutation p.S492G 0.78 tolerated(0.13) benign(0.008) TCGA-CN-A63W-01 11 108380698 108380698 T A EXPH5 Missense_Mutation p.S1846C 0.34 deleterious(0.01) probably_damaging(0.959) TCGA-CN-A63W-01 11 110104001 110104001 G C RDX Silent p.T516T 0.39 TCGA-CN-A63W-01 11 113222881 113222881 A T TTC12 Missense_Mutation p.R466S 0.44 tolerated(0.71) benign(0.003) TCGA-CN-A63W-01 11 113295255 113295255 A T DRD2 Missense_Mutation p.L40Q 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-CN-A63W-01 11 113860189 113860189 A T HTR3A Missense_Mutation p.M419L 0.30 tolerated(0.91) benign(0.016) TCGA-CN-A63W-01 11 116692027 116692027 G A APOA4 Silent p.A249A 0.41 TCGA-CN-A63W-01 11 122848358 122848358 C A BSX Nonstop_Mutation p.*234Lext*? 0.28 TCGA-CN-A63W-01 11 123777182 123777182 C T OR8D4 Missense_Mutation p.S15L 0.57 tolerated(0.49) benign(0.002) TCGA-CN-A63W-01 11 1272821 1272821 G C MUC5B Missense_Mutation p.R4904P 0.35 unknown(0) TCGA-CN-A63W-01 11 134062790 134062790 G A NCAPD3 Silent p.C613C 0.42 TCGA-CN-A63W-01 11 14990424 14990424 G T CALCA Missense_Mutation p.P116H 0.37 tolerated(0.54) possibly_damaging(0.685) TCGA-CN-A63W-01 11 16119172 16119172 T C SOX6 Missense_Mutation p.S321G 0.33 tolerated(0.52) possibly_damaging(0.508) TCGA-CN-A63W-01 11 19914117 19914117 C T NAV2 Missense_Mutation p.P326L 0.33 tolerated_low_confidence(0.78) benign(0.001) TCGA-CN-A63W-01 11 36615385 36615385 T C RAG2 Missense_Mutation p.I112V 0.31 tolerated(1) benign(0.001) TCGA-CN-A63W-01 11 4608601 4608601 A T OR52I2 Missense_Mutation p.T187S 0.41 tolerated(0.17) benign(0.19) TCGA-CN-A63W-01 11 48266803 48266803 C A OR4X2 Missense_Mutation p.P50T 0.26 deleterious(0) benign(0.165) TCGA-CN-A63W-01 11 48347268 48347268 G T OR4C3 Missense_Mutation p.C259F 0.19 deleterious(0.04) benign(0.221) TCGA-CN-A63W-01 11 49974682 49974682 T A OR4C13 Silent p.S236S 0.42 TCGA-CN-A63W-01 11 50003881 50003881 G T OR4C12 Missense_Mutation p.L53M 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-A63W-01 11 5254322 5254322 G A HBD Missense_Mutation p.L106F 0.26 deleterious(0) probably_damaging(0.985) TCGA-CN-A63W-01 11 55761628 55761628 G C OR5F1 Silent p.V158V 0.38 TCGA-CN-A63W-01 11 55872885 55872885 T C OR8H2 Missense_Mutation p.Y123H 0.29 tolerated(0.06) benign(0.216) TCGA-CN-A63W-01 11 55944359 55944359 A T OR5J2 Missense_Mutation p.K89M 0.39 deleterious(0.01) possibly_damaging(0.592) TCGA-CN-A63W-01 11 57480109 57480109 C T TMX2 Silent p.L7L 0.43 TCGA-CN-A63W-01 11 5809393 5809393 G A OR52N1 Silent p.I218I 0.39 TCGA-CN-A63W-01 11 6023446 6023446 C A OR56A4 Silent p.L311L 0.25 TCGA-CN-A63W-01 11 6244316 6244316 T A FAM160A2 Silent p.V310V 0.34 TCGA-CN-A63W-01 11 64603708 64603708 C T CDC42BPG Missense_Mutation p.G517R 0.47 tolerated(0.37) benign(0.157) TCGA-CN-A63W-01 11 69625383 69625383 A T FGF3 Missense_Mutation p.V137E 0.42 tolerated(0.34) benign(0.026) TCGA-CN-A63W-01 11 69949232 69949232 G C ANO1 Missense_Mutation p.E168Q 0.57 deleterious(0.02) probably_damaging(0.968) TCGA-CN-A63W-01 11 75851967 75851967 T A UVRAG Missense_Mutation p.M537K 0.40 tolerated_low_confidence(0.93) benign(0.005) TCGA-CN-A63W-01 11 773589 773589 C A PDDC1 Silent p.G96G 0.29 TCGA-CN-A63W-01 11 83173017 83173017 C G DLG2 Intron 0.21 TCGA-CN-A63W-01 11 85409099 85409099 T C SYTL2 Silent p.G1130G 0.35 TCGA-CN-A63W-01 11 88323788 88323788 C A GRM5 Missense_Mutation p.W557C 0.31 deleterious(0) probably_damaging(0.975) TCGA-CN-A63W-01 12 104054501 104054501 G T STAB2 Missense_Mutation p.S610I 0.35 deleterious(0) possibly_damaging(0.879) TCGA-CN-A63W-01 12 110566905 110566905 G T IFT81 Missense_Mutation p.Q133H 0.44 tolerated(0.26) benign(0.118) TCGA-CN-A63W-01 12 11506728 11506728 T A PRB1 Missense_Mutation p.Q103H 0.07 tolerated_low_confidence(0.21) unknown(0) TCGA-CN-A63W-01 12 118682749 118682749 C A TAOK3 Nonsense_Mutation p.E48* 0.37 TCGA-CN-A63W-01 12 120947830 120947830 T C COQ5 Missense_Mutation p.H224R 0.40 tolerated(0.13) benign(0.168) TCGA-CN-A63W-01 12 14650641 14650641 G A ATF7IP Silent p.Q1149Q 0.28 TCGA-CN-A63W-01 12 18891436 18891436 G T CAPZA3 Missense_Mutation p.M78I 0.36 deleterious(0.02) benign(0.001) TCGA-CN-A63W-01 12 26492364 26492364 G A ITPR2 Missense_Mutation p.T2691I 0.40 tolerated_low_confidence(0.15) benign(0.002) TCGA-CN-A63W-01 12 30881705 30881705 C G CAPRIN2 Missense_Mutation p.E553D 0.05 tolerated(0.26) possibly_damaging(0.474) TCGA-CN-A63W-01 12 42745757 42745757 G C PPHLN1 Missense_Mutation p.S48T 0.53 tolerated(0.06) benign(0.155) TCGA-CN-A63W-01 12 42853645 42853645 T C PRICKLE1 Missense_Mutation p.K821R 0.05 tolerated(0.64) benign(0.015) TCGA-CN-A63W-01 12 48543613 48543613 G A ASB8 Missense_Mutation p.R135W 0.48 deleterious(0) probably_damaging(0.993) TCGA-CN-A63W-01 12 50189495 50189495 C G NCKAP5L Silent p.L716L 0.70 TCGA-CN-A63W-01 12 53451445 53451445 G T TENC1 Missense_Mutation p.A324S 0.41 tolerated(0.11) probably_damaging(0.998) TCGA-CN-A63W-01 12 58131112 58131112 G A AGAP2 Silent p.T306T 0.47 TCGA-CN-A63W-01 12 76740795 76740795 C A BBS10 Missense_Mutation p.G324W 0.32 deleterious(0) probably_damaging(0.934) TCGA-CN-A63W-01 12 85408284 85408284 T C TSPAN19 Missense_Mutation p.I243M 0.31 deleterious_low_confidence(0.02) benign(0.064) TCGA-CN-A63W-01 12 86383257 86383257 C A MGAT4C Missense_Mutation p.R23L 0.52 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-CN-A63W-01 12 8670768 8670768 C A CLEC4D Missense_Mutation p.H44N 0.59 deleterious(0.02) benign(0.212) TCGA-CN-A63W-01 12 89819073 89819073 T C POC1B Silent p.P399P 0.43 TCGA-CN-A63W-01 13 114535790 114535790 C G GAS6 Intron 0.74 TCGA-CN-A63W-01 13 46701752 46701752 T G LCP1 Missense_Mutation p.M620L 0.64 deleterious(0.01) probably_damaging(0.947) TCGA-CN-A63W-01 13 48669235 48669235 C A MED4 5'UTR 0.64 TCGA-CN-A63W-01 13 49823102 49823102 G T CDADC1 Splice_Site p.X59_splice 0.61 TCGA-CN-A63W-01 13 52646088 52646088 G A NEK5 Missense_Mutation p.P639L 0.83 tolerated(0.13) benign(0.295) TCGA-CN-A63W-01 14 106349775 106349775 C T IGHD5-24 Silent p.E2E 0.28 TCGA-CN-A63W-01 14 20502211 20502211 G A OR4K13 Missense_Mutation p.A236V 0.36 deleterious(0) probably_damaging(0.992) TCGA-CN-A63W-01 14 21793083 21793083 T A RPGRIP1 Missense_Mutation p.F690Y 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-CN-A63W-01 14 24572007 24572007 C T PCK2 Missense_Mutation p.P427L 0.15 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 14 55529486 55529486 G T MAPK1IP1L Missense_Mutation p.A57S 0.28 tolerated_low_confidence(0.28) possibly_damaging(0.866) TCGA-CN-A63W-01 14 60976101 60976101 C G SIX6 5'UTR 0.30 TCGA-CN-A63W-01 14 70989856 70989856 C A ADAM20 Missense_Mutation p.R590L 0.50 deleterious(0.01) possibly_damaging(0.843) TCGA-CN-A63W-01 14 74527225 74527225 G A ALDH6A1 3'UTR 0.27 TCGA-CN-A63W-01 14 75136663 75136663 C A AREL1 Missense_Mutation p.R592L 0.28 deleterious(0) probably_damaging(0.997) TCGA-CN-A63W-01 14 78161147 78161147 T A ALKBH1 Missense_Mutation p.N130I 0.16 deleterious(0.04) probably_damaging(0.961) TCGA-CN-A63W-01 14 80668618 80668618 A T DIO2 3'Flank 0.31 TCGA-CN-A63W-01 14 90651103 90651103 A G KCNK13 Missense_Mutation p.E328G 0.32 tolerated(0.21) benign(0.005) TCGA-CN-A63W-01 14 91826003 91826003 C A CCDC88C Missense_Mutation p.G108V 0.36 deleterious(0) probably_damaging(0.993) TCGA-CN-A63W-01 14 93081801 93081801 G C RIN3 Missense_Mutation p.L139F 0.27 deleterious(0) unknown(0) TCGA-CN-A63W-01 14 94776320 94776320 G T SERPINA6 Missense_Mutation p.L213M 0.33 deleterious(0.01) possibly_damaging(0.788) TCGA-CN-A63W-01 14 96152827 96152827 G T TCL1B Missense_Mutation p.R8L 0.14 tolerated(0.65) benign(0.012) TCGA-CN-A63W-01 14 96852107 96852107 G C GSKIP 3'UTR 0.26 TCGA-CN-A63W-01 15 20710642 20710642 A C HERC2P3 Splice_Site 0.14 TCGA-CN-A63W-01 15 22369286 22369286 G T OR4M2 Missense_Mutation p.R237S 0.20 deleterious(0) benign(0.328) TCGA-CN-A63W-01 15 24924386 24924386 G C NPAP1 Silent p.L1124L 0.14 TCGA-CN-A63W-01 15 25430593 25430593 G C SNORD115-10 5'Flank 0.54 TCGA-CN-A63W-01 15 25959330 25959330 C A ATP10A Missense_Mutation p.R612M 0.12 tolerated(0.19) benign(0.158) TCGA-CN-A63W-01 15 27772638 27772638 C A GABRG3 Missense_Mutation p.R309S 0.42 deleterious(0) probably_damaging(0.999) TCGA-CN-A63W-01 15 27772733 27772733 T A GABRG3 Nonsense_Mutation p.Y340* 0.80 TCGA-CN-A63W-01 15 28408273 28408273 C A HERC2 Silent p.A3571A 0.07 TCGA-CN-A63W-01 15 28902388 28902388 C T HERC2P9 RNA 0.39 TCGA-CN-A63W-01 15 42193002 42193002 C A EHD4 Missense_Mutation p.K489N 0.61 tolerated(0.19) probably_damaging(0.998) TCGA-CN-A63W-01 15 42579976 42579976 G C GANC Missense_Mutation p.E97Q 0.44 benign(0.132) TCGA-CN-A63W-01 15 42742624 42742624 C G ZNF106 Missense_Mutation p.E593Q 0.06 deleterious(0.04) benign(0.265) TCGA-CN-A63W-01 15 48443749 48443749 C A MYEF2 Missense_Mutation p.M409I 0.11 tolerated(0.13) benign(0.005) TCGA-CN-A63W-01 15 48797310 48797310 C A FBN1 Missense_Mutation p.M624I 0.09 possibly_damaging(0.457) TCGA-CN-A63W-01 15 49284577 49284577 T G SECISBP2L Missense_Mutation p.E1057A 0.61 deleterious_low_confidence(0) possibly_damaging(0.725) TCGA-CN-A63W-01 15 54305531 54305531 C T UNC13C Missense_Mutation p.S144L 0.13 tolerated_low_confidence(0.26) benign(0) TCGA-CN-A63W-01 15 59323323 59323323 G T RNF111 Missense_Mutation p.G101V 0.67 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-A63W-01 15 75968495 75968495 C G CSPG4 Missense_Mutation p.R2122T 0.44 tolerated(0.16) possibly_damaging(0.461) TCGA-CN-A63W-01 15 84639319 84639319 C T ADAMTSL3 Silent p.L858L 0.05 TCGA-CN-A63W-01 15 90190895 90190895 G T KIF7 Silent p.R498R 0.64 TCGA-CN-A63W-01 16 14341304 14341304 G T MKL2 Intron 0.50 TCGA-CN-A63W-01 16 24135177 24135177 A G PRKCB Missense_Mutation p.T314A 0.76 tolerated(0.67) benign(0.001) TCGA-CN-A63W-01 16 2580999 2580999 G C CEMP1 Missense_Mutation p.L26V 0.22 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-CN-A63W-01 16 2812438 2812438 A T SRRM2 Missense_Mutation p.S637C 0.05 unknown(0) TCGA-CN-A63W-01 16 61935290 61935290 C A CDH8 Missense_Mutation p.V114L 0.45 tolerated(0.35) benign(0) TCGA-CN-A63W-01 16 66839679 66839679 C - NAE1 Splice_Site p.X499_splice 0.31 TCGA-CN-A63W-01 16 70975619 70975619 C A HYDIN Missense_Mutation p.R2258L 0.37 possibly_damaging(0.605) TCGA-CN-A63W-01 16 74761162 74761162 C A FA2H Missense_Mutation p.E162D 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-CN-A63W-01 16 75512696 75512696 C T CHST6 Missense_Mutation p.R344H 0.37 deleterious(0.02) benign(0.051) TCGA-CN-A63W-01 16 81711921 81711921 G T CMIP Missense_Mutation p.C359F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-CN-A63W-01 16 83983096 83983096 G A OSGIN1 5'UTR 0.34 TCGA-CN-A63W-01 16 84203679 84203679 C A DNAAF1 Silent p.T415T 0.38 TCGA-CN-A63W-01 16 84229196 84229196 C T ADAD2 Silent p.S397S 0.18 TCGA-CN-A63W-01 16 845787 845787 G C CHTF18 Missense_Mutation p.D760H 0.12 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 16 88874608 88874608 C G CDT1 Silent p.V521V 0.31 TCGA-CN-A63W-01 16 9923360 9923360 C A GRIN2A Missense_Mutation p.A643S 0.77 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A63W-01 17 10304678 10304678 G C MYH8 Missense_Mutation p.Q1008E 0.50 deleterious(0.01) possibly_damaging(0.624) TCGA-CN-A63W-01 17 10404461 10404461 A G MYH1 Missense_Mutation p.L1235P 0.18 deleterious(0) possibly_damaging(0.781) TCGA-CN-A63W-01 17 11684444 11684444 G A DNAH9 Silent p.T2557T 0.27 TCGA-CN-A63W-01 17 26902194 26902194 C T ALDOC Missense_Mutation p.G91S 0.27 deleterious(0.01) probably_damaging(0.955) TCGA-CN-A63W-01 17 29844670 29844670 G T RAB11FIP4 Missense_Mutation p.G113V 0.21 tolerated(0.13) benign(0.009) TCGA-CN-A63W-01 17 30358468 30358468 T C LRRC37B Missense_Mutation p.L656S 0.38 deleterious(0) probably_damaging(0.961) TCGA-CN-A63W-01 17 33520477 33520477 C T SLC35G3 Missense_Mutation p.A284T 0.42 tolerated(0.55) benign(0.061) TCGA-CN-A63W-01 17 33520759 33520759 C G SLC35G3 Missense_Mutation p.A190P 0.36 deleterious(0) benign(0.286) TCGA-CN-A63W-01 17 36091623 36091623 G T HNF1B Missense_Mutation p.H336Q 0.32 tolerated(0.43) benign(0.311) TCGA-CN-A63W-01 17 37188126 37188126 C A CTD-2206N4.2 5'Flank 0.44 TCGA-CN-A63W-01 17 37922660 37922660 C A IKZF3 Missense_Mutation p.D305Y 0.43 deleterious(0) probably_damaging(0.982) TCGA-CN-A63W-01 17 40767014 40767014 G T TUBG1 Silent p.A437A 0.28 TCGA-CN-A63W-01 17 40767015 40767015 G A TUBG1 Missense_Mutation p.A438T 0.27 deleterious(0) probably_damaging(0.984) TCGA-CN-A63W-01 17 41106957 41106957 C T AARSD1 Missense_Mutation p.A297T 0.41 deleterious(0) probably_damaging(0.988) TCGA-CN-A63W-01 17 41582089 41582089 G T DHX8 Missense_Mutation p.A542S 0.36 tolerated(0.26) benign(0.024) TCGA-CN-A63W-01 17 43227434 43227434 G T HEXIM1 Nonsense_Mutation p.E293* 0.39 TCGA-CN-A63W-01 17 45490284 45490284 T A EFCAB13 Splice_Site p.X808_splice 0.34 TCGA-CN-A63W-01 17 48264870 48264870 C T COL1A1 Missense_Mutation p.G1133E 0.45 unknown(0) TCGA-CN-A63W-01 17 60493471 60493471 T C EFCAB3 Silent p.S418S 0.41 TCGA-CN-A63W-01 17 61958001 61958001 G C GH2 Missense_Mutation p.P196R 0.59 tolerated_low_confidence(0.12) benign(0) TCGA-CN-A63W-01 17 62028832 62028832 C G SCN4A Missense_Mutation p.M935I 0.52 tolerated(0.42) benign(0.002) TCGA-CN-A63W-01 17 67256516 67256516 T A ABCA5 Missense_Mutation p.Y1201F 0.56 tolerated(0.68) benign(0.016) TCGA-CN-A63W-01 17 72345427 72345427 G T KIF19 Missense_Mutation p.E384D 0.49 tolerated(0.22) benign(0.001) TCGA-CN-A63W-01 17 7370046 7370046 G T ZBTB4 Silent p.L25L 0.89 TCGA-CN-A63W-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.67 TCGA-CN-A63W-01 17 79080653 79080653 G T BAIAP2 Silent p.T482T 0.22 TCGA-CN-A63W-01 17 80398881 80398881 G C HEXDC Missense_Mutation p.D331H 0.48 deleterious(0.02) benign(0.343) TCGA-CN-A63W-01 17 8647959 8647959 A G CCDC42 5'UTR 0.20 TCGA-CN-A63W-01 18 10689740 10689740 G T PIEZO2 Missense_Mutation p.D2357E 0.57 deleterious(0) benign(0.027) TCGA-CN-A63W-01 18 11872270 11872270 G A GNAL Nonsense_Mutation p.W345* 0.20 TCGA-CN-A63W-01 18 48510764 48510764 A T ELAC1 Missense_Mutation p.Q152H 0.59 tolerated(0.17) benign(0.331) TCGA-CN-A63W-01 18 8825951 8825951 A T SOGA2 Silent p.P1481P 0.69 TCGA-CN-A63W-01 18 9887311 9887311 C A TXNDC2 Missense_Mutation p.P279T 0.23 tolerated(0.58) unknown(0) TCGA-CN-A63W-01 19 14024105 14024105 G T CC2D1A Missense_Mutation p.R168L 0.24 deleterious(0) probably_damaging(0.999) TCGA-CN-A63W-01 19 14938347 14938347 T G OR7A5 Missense_Mutation p.K236T 0.43 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CN-A63W-01 19 15072888 15072888 G A SLC1A6 Silent p.H287H 0.33 TCGA-CN-A63W-01 19 15295220 15295220 C A NOTCH3 Missense_Mutation p.A818S 0.29 tolerated(1) benign(0.007) TCGA-CN-A63W-01 19 15295221 15295221 G A NOTCH3 Silent p.P817P 0.28 TCGA-CN-A63W-01 19 17394588 17394588 G C ANKLE1 Missense_Mutation p.D339H 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-CN-A63W-01 19 18286135 18286135 T C IFI30 Silent p.S110S 0.40 TCGA-CN-A63W-01 19 20045066 20045066 T A ZNF93 Missense_Mutation p.F434L 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-CN-A63W-01 19 21910214 21910214 C T ZNF100 Silent p.R300R 0.42 TCGA-CN-A63W-01 19 23836307 23836307 T A ZNF675 Silent p.G476G 0.35 TCGA-CN-A63W-01 19 34859488 34859488 G T GPI Missense_Mutation p.G134C 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.886) TCGA-CN-A63W-01 19 38810813 38810813 G T KCNK6 Missense_Mutation p.V75F 0.30 deleterious(0.04) benign(0.011) TCGA-CN-A63W-01 19 3942091 3942091 C A NMRK2 Missense_Mutation p.D171E 0.59 deleterious(0) benign(0.281) TCGA-CN-A63W-01 19 42862415 42862415 C T MEGF8 Missense_Mutation p.P1644S 0.36 deleterious(0) probably_damaging(0.991) TCGA-CN-A63W-01 19 43262387 43262387 C A PSG8 Missense_Mutation p.R159M 0.41 tolerated(0.11) benign(0.065) TCGA-CN-A63W-01 19 43430101 43430101 G A PSG7 Missense_Mutation p.A356V 0.38 deleterious(0.04) benign(0.241) TCGA-CN-A63W-01 19 46388991 46388991 C A IRF2BP1 Silent p.L14L 0.11 TCGA-CN-A63W-01 19 48714956 48714959 ACTG - CARD8 3'UTR 0.24 TCGA-CN-A63W-01 19 49641518 49641518 G - PPFIA3 Frame_Shift_Del p.V638Cfs*90 0.32 TCGA-CN-A63W-01 19 50029346 50029346 G T FCGRT Missense_Mutation p.K356N 0.36 deleterious_low_confidence(0.03) benign(0.016) TCGA-CN-A63W-01 19 51914293 51914293 C A SIGLEC10 3'UTR 0.22 TCGA-CN-A63W-01 19 52448913 52448913 G C ZNF613 Missense_Mutation p.E593Q 0.08 deleterious(0.01) benign(0.002) TCGA-CN-A63W-01 19 52658865 52658865 C G ZNF836 Missense_Mutation p.E691Q 0.46 deleterious(0.04) benign(0.152) TCGA-CN-A63W-01 19 55258838 55258838 G T KIR2DL3 Splice_Site p.X239_splice 0.31 TCGA-CN-A63W-01 19 56704107 56704107 C G ZSCAN5B Missense_Mutation p.K105N 0.39 deleterious(0.04) possibly_damaging(0.511) TCGA-CN-A63W-01 19 5783178 5783178 C G PRR22 Silent p.A360A 0.41 TCGA-CN-A63W-01 19 8563374 8563374 G A PRAM1 Missense_Mutation p.R440W 0.39 deleterious(0) probably_damaging(0.976) TCGA-CN-A63W-01 19 9868423 9868423 G A ZNF846 Missense_Mutation p.H444Y 0.45 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 1 103379927 103379927 G A COL11A1 Missense_Mutation p.P1320L 0.21 unknown(0) TCGA-CN-A63W-01 1 103387127 103387127 C A COL11A1 Missense_Mutation p.G1219W 0.33 unknown(0) TCGA-CN-A63W-01 1 111492686 111492686 T C LRIF1 Silent p.K552K 0.34 TCGA-CN-A63W-01 1 113460416 113460416 C T SLC16A1 Silent p.K204K 0.33 TCGA-CN-A63W-01 1 115110808 115110808 A C BCAS2 Nonsense_Mutation p.Y207* 0.26 TCGA-CN-A63W-01 1 115401315 115401315 G C SYCP1 Missense_Mutation p.A147P 0.41 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 1 118623726 118623726 A G SPAG17 Missense_Mutation p.L736P 0.19 tolerated(0.08) possibly_damaging(0.757) TCGA-CN-A63W-01 1 119474355 119474355 A T TBX15 5'UTR 0.62 TCGA-CN-A63W-01 1 152648469 152648469 A T LCE2C Splice_Site 0.33 TCGA-CN-A63W-01 1 155255066 155255066 A C HCN3 Missense_Mutation p.E400D 0.51 tolerated(0.35) benign(0) TCGA-CN-A63W-01 1 155837976 155837976 T G SYT11 Silent p.P85P 0.40 TCGA-CN-A63W-01 1 156374232 156374232 G T C1orf61 3'UTR 0.26 TCGA-CN-A63W-01 1 156616845 156616845 C T BCAN Missense_Mutation p.A115V 0.39 deleterious(0.03) probably_damaging(0.925) TCGA-CN-A63W-01 1 15855598 15855598 G T DNAJC16 5'UTR 0.46 TCGA-CN-A63W-01 1 158623181 158623181 C - SPTA1 Frame_Shift_Del p.G1024Afs*87 0.28 TCGA-CN-A63W-01 1 166039457 166039457 C A FAM78B 3'UTR 0.42 TCGA-CN-A63W-01 1 169772434 169772434 C G C1orf112 Missense_Mutation p.T99R 0.48 deleterious(0) probably_damaging(0.98) TCGA-CN-A63W-01 1 169798416 169798416 C G C1orf112 Silent p.L380L 0.14 TCGA-CN-A63W-01 1 171076876 171076876 A G FMO3 Missense_Mutation p.T128A 0.50 deleterious(0.01) benign(0.04) TCGA-CN-A63W-01 1 172376917 172376917 G A DNM3 Missense_Mutation p.R843K 0.24 tolerated_low_confidence(0.34) unknown(0) TCGA-CN-A63W-01 1 175066654 175066654 C T TNN Missense_Mutation p.R564C 0.13 deleterious(0.03) possibly_damaging(0.77) TCGA-CN-A63W-01 1 176671764 176671764 G A PAPPA2 Missense_Mutation p.M1086I 0.31 tolerated(0.17) benign(0.001) TCGA-CN-A63W-01 1 185962505 185962505 T C HMCN1 Intron 0.36 TCGA-CN-A63W-01 1 186302298 186302298 G A TPR Missense_Mutation p.S1804L 0.27 benign(0.307) TCGA-CN-A63W-01 1 190068141 190068141 G C BRINP3 Silent p.T436T 0.30 TCGA-CN-A63W-01 1 196645186 196645186 A T CFH Missense_Mutation p.I140L 0.38 tolerated(0.82) benign(0.01) TCGA-CN-A63W-01 1 196796048 196796048 A G CFHR1 Missense_Mutation p.N115D 0.34 tolerated(0.65) possibly_damaging(0.675) TCGA-CN-A63W-01 1 196964875 196964875 T C CFHR5 Silent p.P212P 0.36 TCGA-CN-A63W-01 1 197391036 197391036 G A CRB1 Missense_Mutation p.S693N 0.54 tolerated(0.36) benign(0.019) TCGA-CN-A63W-01 1 203316799 203316799 C T FMOD Silent p.E200E 0.25 TCGA-CN-A63W-01 1 204423733 204423733 G T PIK3C2B Intron 0.22 TCGA-CN-A63W-01 1 205779303 205779303 G A SLC41A1 Silent p.S89S 0.40 TCGA-CN-A63W-01 1 207652615 207652615 T A CR2 Silent p.P1034P 0.41 TCGA-CN-A63W-01 1 208211756 208211756 T C PLXNA2 Missense_Mutation p.E1575G 0.25 deleterious(0) probably_damaging(0.988) TCGA-CN-A63W-01 1 212118150 212118150 C G INTS7 Missense_Mutation p.Q859H 0.07 deleterious(0.02) probably_damaging(0.973) TCGA-CN-A63W-01 1 213349785 213349785 A T RPS6KC1 Missense_Mutation p.S332C 0.32 deleterious(0) probably_damaging(0.998) TCGA-CN-A63W-01 1 215345468 215345468 C T KCNK2 Silent p.D255D 0.31 TCGA-CN-A63W-01 1 220091794 220091794 A G SLC30A10 Missense_Mutation p.V254A 0.27 deleterious(0.05) benign(0.1) TCGA-CN-A63W-01 1 22172735 22172735 C A HSPG2 Missense_Mutation p.R2777L 0.35 benign(0.015) TCGA-CN-A63W-01 1 224463099 224463099 G C NVL Missense_Mutation p.P675R 0.35 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 1 228400265 228400265 G C OBSCN Missense_Mutation p.V261L 0.50 possibly_damaging(0.904) TCGA-CN-A63W-01 1 228566495 228566495 G A OBSCN Silent p.%3D 0.61 TCGA-CN-A63W-01 1 237659936 237659936 G T RYR2 Missense_Mutation p.G696V 0.52 probably_damaging(1) TCGA-CN-A63W-01 1 240492374 240492374 A T FMN2 Splice_Site p.X1406_splice 0.42 TCGA-CN-A63W-01 1 248570267 248570267 C T OR2T1 Silent p.L324L 0.29 TCGA-CN-A63W-01 1 248756314 248756314 A G OR2T10 Silent p.Y252Y 0.57 TCGA-CN-A63W-01 1 27876193 27876193 C T AHDC1 Missense_Mutation p.G812S 0.27 tolerated(0.6) probably_damaging(0.931) TCGA-CN-A63W-01 1 32678210 32678210 C A DCDC2B Missense_Mutation p.P216H 0.27 deleterious(0.04) benign(0.177) TCGA-CN-A63W-01 1 35370284 35370284 T G DLGAP3 Missense_Mutation p.H234P 0.58 deleterious(0.02) benign(0.396) TCGA-CN-A63W-01 1 40980312 40980312 A G EXO5 Silent p.E32E 0.49 TCGA-CN-A63W-01 1 41012254 41012254 G C ZNF684 Missense_Mutation p.D87H 0.11 deleterious(0.01) benign(0.008) TCGA-CN-A63W-01 1 52305985 52305985 T C NRD1 Silent p.E181E 0.38 TCGA-CN-A63W-01 1 53535790 53535790 G T PODN Missense_Mutation p.R136L 0.33 tolerated(0.09) benign(0.39) TCGA-CN-A63W-01 1 75626662 75626662 G A LHX8 3'UTR 0.22 TCGA-CN-A63W-01 1 76288149 76288149 A T MSH4 Nonsense_Mutation p.R349* 0.38 TCGA-CN-A63W-01 1 78408200 78408200 G C NEXN Missense_Mutation p.E572Q 0.27 deleterious(0.01) benign(0.375) TCGA-CN-A63W-01 20 18794793 18794793 G T SCP2D1 Nonsense_Mutation p.E112* 0.23 TCGA-CN-A63W-01 20 24988365 24988365 C A ACSS1 3'UTR 0.37 TCGA-CN-A63W-01 20 34089671 34089671 G C CEP250 Splice_Site p.X1300_splice 0.50 TCGA-CN-A63W-01 20 41306786 41306786 G T PTPRT Silent p.P291P 0.40 TCGA-CN-A63W-01 20 42979565 42979565 C A R3HDML 3'UTR 0.33 TCGA-CN-A63W-01 20 44841709 44841709 C A CDH22 Missense_Mutation p.E319D 0.42 tolerated(0.43) possibly_damaging(0.571) TCGA-CN-A63W-01 20 45927651 45927651 G A ZMYND8 Missense_Mutation p.P92L 0.35 deleterious_low_confidence(0) possibly_damaging(0.596) TCGA-CN-A63W-01 20 50133389 50133389 G A NFATC2 Silent p.A422A 0.28 TCGA-CN-A63W-01 20 5294737 5294737 G T PROKR2 Silent p.A93A 0.19 TCGA-CN-A63W-01 20 58449032 58449032 G T SYCP2 Nonsense_Mutation p.S1145* 0.30 TCGA-CN-A63W-01 20 61870933 61870933 C G BIRC7 Missense_Mutation p.S291R 0.22 tolerated(0.05) benign(0.156) TCGA-CN-A63W-01 21 11038825 11038825 C T BAGE2 RNA 0.10 TCGA-CN-A63W-01 21 28296890 28296890 T C ADAMTS5 Missense_Mutation p.K759E 0.23 tolerated(0.21) probably_damaging(0.985) TCGA-CN-A63W-01 21 32508301 32508301 G A TIAM1 Missense_Mutation p.P1278L 0.78 deleterious(0) probably_damaging(0.956) TCGA-CN-A63W-01 21 42813696 42813696 G T MX1 Missense_Mutation p.D262Y 0.17 deleterious(0) probably_damaging(0.967) TCGA-CN-A63W-01 22 17073429 17073429 T A CCT8L2 Silent p.T4T 0.44 TCGA-CN-A63W-01 22 22892241 22892241 T G PRAME Missense_Mutation p.Q287P 0.28 deleterious(0) probably_damaging(0.926) TCGA-CN-A63W-01 22 31521996 31521996 G T INPP5J Intron 0.38 TCGA-CN-A63W-01 22 31521997 31521997 G T INPP5J Intron 0.31 TCGA-CN-A63W-01 22 37334105 37334105 C A CSF2RB Missense_Mutation p.P752H 0.47 tolerated(0.07) benign(0.064) TCGA-CN-A63W-01 22 41556727 41556727 G T EP300 Splice_Site p.X1224_splice 0.18 TCGA-CN-A63W-01 22 42896698 42896698 G A SERHL Intron 0.29 TCGA-CN-A63W-01 22 44966397 44966397 G C LINC00207 RNA 0.31 TCGA-CN-A63W-01 22 50902991 50902991 C A SBF1 Missense_Mutation p.R536S 0.37 tolerated(0.21) benign(0.068) TCGA-CN-A63W-01 2 100209883 100209883 G A AFF3 Missense_Mutation p.P772L 0.42 deleterious(0) probably_damaging(0.96) TCGA-CN-A63W-01 2 100209885 100209885 G A AFF3 Silent p.V771V 0.43 TCGA-CN-A63W-01 2 125192192 125192192 G A CNTNAP5 Missense_Mutation p.G221R 0.49 tolerated(0.64) probably_damaging(1) TCGA-CN-A63W-01 2 125530379 125530379 C A CNTNAP5 Missense_Mutation p.P845H 0.31 deleterious(0) probably_damaging(0.971) TCGA-CN-A63W-01 2 132240444 132240444 C A TUBA3D 3'UTR 0.31 TCGA-CN-A63W-01 2 132240445 132240445 C A TUBA3D 3'UTR 0.30 TCGA-CN-A63W-01 2 139316872 139316872 G T SPOPL Missense_Mutation p.A227S 0.32 deleterious(0.02) possibly_damaging(0.903) TCGA-CN-A63W-01 2 149528848 149528848 A T EPC2 Missense_Mutation p.S538C 0.11 tolerated(0.08) benign(0.021) TCGA-CN-A63W-01 2 152659718 152659718 T A ARL5A 3'UTR 0.48 TCGA-CN-A63W-01 2 158272365 158272365 T C CYTIP Missense_Mutation p.N302D 0.36 tolerated(0.09) benign(0.016) TCGA-CN-A63W-01 2 166532981 166532981 G T CSRNP3 Nonsense_Mutation p.G190* 0.39 TCGA-CN-A63W-01 2 167298000 167298000 T C SCN7A Missense_Mutation p.E688G 0.43 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 2 168106940 168106940 C G XIRP2 Missense_Mutation p.T3013R 0.34 benign(0.022) TCGA-CN-A63W-01 2 177017513 177017513 A T HOXD4 Missense_Mutation p.N204I 0.31 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 2 178080842 178080842 A T HNRNPA3 Missense_Mutation p.D160V 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A63W-01 2 179449435 179449435 G T TTN Missense_Mutation p.P21645T 0.34 TCGA-CN-A63W-01 2 179475027 179475027 C A TTN Nonsense_Mutation p.G17076* 0.11 TCGA-CN-A63W-01 2 179535851 179535851 A T TTN Silent p.T11758T 0.41 TCGA-CN-A63W-01 2 17962285 17962285 A G GEN1 Silent p.Q602Q 0.34 TCGA-CN-A63W-01 2 179644007 179644007 C A TTN Missense_Mutation p.E1304D 0.32 TCGA-CN-A63W-01 2 189855056 189855056 A T COL3A1 Silent p.I256I 0.52 TCGA-CN-A63W-01 2 189868855 189868855 G T COL3A1 Missense_Mutation p.A937S 0.32 benign(0.18) TCGA-CN-A63W-01 2 191929664 191929664 G T STAT4 Silent p.T217T 0.39 TCGA-CN-A63W-01 2 198621153 198621153 T G BOLL Missense_Mutation p.E255A 0.30 deleterious(0.03) probably_damaging(0.986) TCGA-CN-A63W-01 2 201747114 201747114 T C PPIL3 Intron 0.52 TCGA-CN-A63W-01 2 202002912 202002912 G T CFLAR Intron 0.56 TCGA-CN-A63W-01 2 204599769 204599769 C T CD28 3'UTR 0.35 TCGA-CN-A63W-01 2 207041089 207041089 G C GPR1 Missense_Mutation p.L295V 0.25 deleterious(0.04) benign(0.389) TCGA-CN-A63W-01 2 207814372 207814372 G C CPO Missense_Mutation p.D34H 0.62 deleterious(0) possibly_damaging(0.625) TCGA-CN-A63W-01 2 21231606 21231606 G T APOB Missense_Mutation p.R2712S 0.30 benign(0) TCGA-CN-A63W-01 2 21231607 21231607 G T APOB Missense_Mutation p.F2711L 0.30 benign(0.011) TCGA-CN-A63W-01 2 25610229 25610229 C T DTNB Missense_Mutation p.R585H 0.32 deleterious(0.02) benign(0.052) TCGA-CN-A63W-01 2 29092739 29092739 T C TRMT61B Silent p.E135E 0.42 TCGA-CN-A63W-01 2 32093471 32093471 T G MEMO1 Missense_Mutation p.S285R 0.40 deleterious(0) probably_damaging(0.998) TCGA-CN-A63W-01 2 44528312 44528312 G A SLC3A1 Intron 0.24 TCGA-CN-A63W-01 2 47403607 47403607 G C CALM2 5'UTR 0.28 TCGA-CN-A63W-01 2 74598237 74598237 G A DCTN1 Missense_Mutation p.R238W 0.41 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 2 80529359 80529359 G T LRRTM1 3'UTR 0.33 TCGA-CN-A63W-01 2 87012909 87012909 C A CD8A 3'UTR 0.29 TCGA-CN-A63W-01 2 88857359 88857359 A - EIF2AK3 Frame_Shift_Del p.P1083Qfs*13 0.31 TCGA-CN-A63W-01 2 90249393 90249393 C T IGKV1D-43 Missense_Mutation p.P117S 0.27 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 2 97276534 97276534 C G KANSL3 Missense_Mutation p.M416I 0.36 tolerated(0.17) benign(0.04) TCGA-CN-A63W-01 2 98341614 98341614 T A ZAP70 Silent p.A154A 0.44 TCGA-CN-A63W-01 3 107097252 107097252 A C CCDC54 Missense_Mutation p.Q273P 0.71 deleterious(0) probably_damaging(0.97) TCGA-CN-A63W-01 3 119466698 119466698 G A MAATS1 Missense_Mutation p.V698I 0.50 deleterious(0) possibly_damaging(0.7) TCGA-CN-A63W-01 3 121400619 121400619 G C GOLGB1 Missense_Mutation p.Q2930E 0.29 possibly_damaging(0.58) TCGA-CN-A63W-01 3 122345754 122345754 C A PARP15 Missense_Mutation p.P438T 0.41 tolerated(0.48) possibly_damaging(0.465) TCGA-CN-A63W-01 3 126916057 126916057 G T C3orf56 Missense_Mutation p.A177S 0.76 tolerated(0.09) benign(0.014) TCGA-CN-A63W-01 3 127682102 127682102 C A KBTBD12 Missense_Mutation p.N521K 0.67 deleterious(0) possibly_damaging(0.835) TCGA-CN-A63W-01 3 129270168 129270168 G C H1FOO Missense_Mutation p.Q342H 0.28 deleterious(0.02) possibly_damaging(0.454) TCGA-CN-A63W-01 3 130748712 130748712 G - NEK11 Frame_Shift_Del p.G54Efs*4 0.32 TCGA-CN-A63W-01 3 134322308 134322308 G A KY 3'UTR 0.22 TCGA-CN-A63W-01 3 138763015 138763015 C T PRR23C Missense_Mutation p.A150T 0.17 tolerated(0.38) possibly_damaging(0.883) TCGA-CN-A63W-01 3 142840858 142840858 T A CHST2 Missense_Mutation p.N400K 0.52 tolerated(0.74) benign(0.091) TCGA-CN-A63W-01 3 142840969 142840969 G C CHST2 Silent p.R437R 0.38 TCGA-CN-A63W-01 3 150911524 150911524 A T MED12L Intron 0.21 TCGA-CN-A63W-01 3 169977769 169977769 C T PRKCI Missense_Mutation p.T79I 0.30 deleterious(0.01) possibly_damaging(0.575) TCGA-CN-A63W-01 3 183994271 183994271 G T ECE2 Intron 0.53 TCGA-CN-A63W-01 3 191074882 191074882 C G CCDC50 Missense_Mutation p.R19G 0.48 deleterious(0) probably_damaging(0.996) TCGA-CN-A63W-01 3 192980984 192980984 T C HRASLS Missense_Mutation p.F227S 0.28 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 3 38805036 38805036 G A SCN10A Silent p.F217F 0.60 TCGA-CN-A63W-01 3 46754406 46754406 C T PRSS50 Silent p.R302R 0.65 TCGA-CN-A63W-01 3 58279551 58279551 C A ABHD6 3'UTR 0.83 TCGA-CN-A63W-01 3 58279552 58279552 G C ABHD6 3'UTR 0.83 TCGA-CN-A63W-01 3 58520885 58520885 C T ACOX2 5'UTR 0.09 TCGA-CN-A63W-01 3 7456772 7456772 G T GRM7 Nonsense_Mutation p.E366* 0.59 TCGA-CN-A63W-01 3 9695347 9695347 G C MTMR14 Missense_Mutation p.D68H 0.20 deleterious(0) probably_damaging(0.996) TCGA-CN-A63W-01 3 99513367 99513367 G C COL8A1 Missense_Mutation p.G208R 0.20 deleterious(0.02) unknown(0) TCGA-CN-A63W-01 4 114279309 114279309 G A ANK2 Missense_Mutation p.A3179T 0.45 benign(0.043) TCGA-CN-A63W-01 4 118006200 118006200 T G TRAM1L1 Missense_Mutation p.N117T 0.10 tolerated(0.11) benign(0.001) TCGA-CN-A63W-01 4 122053744 122053744 G A TNIP3 3'UTR 0.47 TCGA-CN-A63W-01 4 129003419 129003419 C T LARP1B Missense_Mutation p.A106V 0.37 tolerated(0.25) benign(0.008) TCGA-CN-A63W-01 4 142949836 142949836 C A INPP4B 3'UTR 0.40 TCGA-CN-A63W-01 4 142949899 142949899 G T INPP4B 3'UTR 0.24 TCGA-CN-A63W-01 4 146807290 146807290 C A ZNF827 Silent p.R429R 0.23 TCGA-CN-A63W-01 4 154649432 154649432 C T RNF175 Missense_Mutation p.G110R 0.52 tolerated(0.35) possibly_damaging(0.786) TCGA-CN-A63W-01 4 175416710 175416710 G A HPGD Missense_Mutation p.R163C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-A63W-01 4 20482397 20482397 G T SLIT2 Missense_Mutation p.D176Y 0.29 deleterious(0.01) probably_damaging(1) TCGA-CN-A63W-01 4 20711341 20711341 G - PACRGL Frame_Shift_Del p.E105Nfs*16 0.30 TCGA-CN-A63W-01 4 41615637 41615637 A G LIMCH1 Missense_Mutation p.Q214R 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-CN-A63W-01 4 46973106 46973106 C A GABRA4 Missense_Mutation p.V290L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CN-A63W-01 4 47548772 47548772 G C ATP10D Missense_Mutation p.G510R 0.42 tolerated(0.77) benign(0.052) TCGA-CN-A63W-01 4 5961316 5961316 G C C4orf50 Missense_Mutation p.T680R 0.38 tolerated(0.14) possibly_damaging(0.778) TCGA-CN-A63W-01 4 70823093 70823093 G A CSN2 Missense_Mutation p.P192S 0.38 tolerated(0.13) probably_damaging(0.96) TCGA-CN-A63W-01 4 71068474 71068474 C T ODAM Missense_Mutation p.S217L 0.38 deleterious(0) benign(0.005) TCGA-CN-A63W-01 4 71275771 71275771 A T PROL1 Missense_Mutation p.K242N 0.24 deleterious_low_confidence(0) unknown(0) TCGA-CN-A63W-01 4 71509351 71509351 T C ENAM Silent p.T736T 0.23 TCGA-CN-A63W-01 4 71691068 71691068 G A GRSF1 Silent p.H446H 0.48 TCGA-CN-A63W-01 4 82366944 82366944 C A RASGEF1B Nonsense_Mutation p.E260* 0.18 TCGA-CN-A63W-01 4 83276431 83276431 A G HNRNPD Intron 0.69 TCGA-CN-A63W-01 4 8602934 8602934 C A CPZ Nonsense_Mutation p.S69* 0.20 TCGA-CN-A63W-01 4 87019718 87019718 C T MAPK10 Missense_Mutation p.G254E 0.41 deleterious(0) probably_damaging(0.97) TCGA-CN-A63W-01 4 87726497 87726497 G C PTPN13 Missense_Mutation p.K2245N 0.14 deleterious(0) probably_damaging(0.968) TCGA-CN-A63W-01 4 94750208 94750208 G C ATOH1 Missense_Mutation p.R44T 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.614) TCGA-CN-A63W-01 5 132412462 132412462 C T HSPA4 Silent p.I260I 0.55 TCGA-CN-A63W-01 5 13753519 13753519 C A DNAH5 Missense_Mutation p.E3565D 0.27 benign(0.217) TCGA-CN-A63W-01 5 13776571 13776571 C A DNAH5 Missense_Mutation p.W3117L 0.55 possibly_damaging(0.637) TCGA-CN-A63W-01 5 13917249 13917249 C A DNAH5 Intron 0.32 TCGA-CN-A63W-01 5 140176485 140176485 C T PCDHA2 Missense_Mutation p.R646C 0.73 tolerated_low_confidence(0.05) benign(0.153) TCGA-CN-A63W-01 5 140724669 140724669 C T PCDHGA3 Missense_Mutation p.P357S 0.74 tolerated_low_confidence(0.36) benign(0.065) TCGA-CN-A63W-01 5 141248204 141248204 G T PCDH1 Missense_Mutation p.P278H 0.71 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 5 142513555 142513555 G A ARHGAP26 Missense_Mutation p.M574I 0.72 tolerated(0.58) benign(0) TCGA-CN-A63W-01 5 146777234 146777234 T C DPYSL3 Missense_Mutation p.R600G 0.62 deleterious(0.03) benign(0.115) TCGA-CN-A63W-01 5 150925814 150925814 G - FAT2 Frame_Shift_Del p.P1625Hfs*4 0.36 TCGA-CN-A63W-01 5 169535491 169535491 C T FOXI1 Missense_Mutation p.A338V 0.64 tolerated(0.31) benign(0.006) TCGA-CN-A63W-01 5 173337529 173337529 C G CPEB4 Missense_Mutation p.R377G 0.63 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-CN-A63W-01 5 176638879 176638879 G A NSD1 Nonsense_Mutation p.W1160* 0.79 TCGA-CN-A63W-01 5 23510043 23510043 C A PRDM9 Silent p.R70R 0.58 TCGA-CN-A63W-01 5 32397322 32397322 C G ZFR Intron 0.26 TCGA-CN-A63W-01 5 33982365 33982365 G T SLC45A2 Missense_Mutation p.L180I 0.57 deleterious(0.04) probably_damaging(1) TCGA-CN-A63W-01 5 43246074 43246074 C G NIM1K Missense_Mutation p.T66R 0.26 deleterious(0.01) possibly_damaging(0.483) TCGA-CN-A63W-01 5 58120944 58120944 C T RAB3C Missense_Mutation p.R151W 0.84 deleterious(0) probably_damaging(0.998) TCGA-CN-A63W-01 5 82789364 82789364 G A VCAN Splice_Site p.X149_splice 0.61 TCGA-CN-A63W-01 5 870640 870640 C T BRD9 Silent p.S491S 0.13 TCGA-CN-A63W-01 5 95226885 95226885 C A ELL2 Missense_Mutation p.R561S 0.65 deleterious(0) benign(0.289) TCGA-CN-A63W-01 6 111695668 111695668 G A REV3L Missense_Mutation p.S1297F 0.19 tolerated_low_confidence(0.06) benign(0.245) TCGA-CN-A63W-01 6 112462049 112462049 C A LAMA4 Missense_Mutation p.K963N 0.41 deleterious(0.01) probably_damaging(0.967) TCGA-CN-A63W-01 6 118475755 118475755 C G SLC35F1 Silent p.V107V 0.34 TCGA-CN-A63W-01 6 12294602 12294602 C A EDN1 Silent p.I166I 0.30 TCGA-CN-A63W-01 6 130762719 130762719 C G TMEM200A Silent p.S384S 0.38 TCGA-CN-A63W-01 6 13977246 13977246 T C RNF182 5'UTR 0.39 TCGA-CN-A63W-01 6 142539729 142539729 T A VTA1 Silent p.A291A 0.34 TCGA-CN-A63W-01 6 147556394 147556394 G A STXBP5 Missense_Mutation p.R86H 0.39 deleterious(0.01) possibly_damaging(0.459) TCGA-CN-A63W-01 6 151151761 151151761 C T PLEKHG1 Missense_Mutation p.P505L 0.36 deleterious(0.01) benign(0.016) TCGA-CN-A63W-01 6 152469313 152469313 G A SYNE1 Silent p.I8281I 0.42 TCGA-CN-A63W-01 6 160505046 160505046 A G IGF2R Silent p.P1966P 0.39 TCGA-CN-A63W-01 6 167786681 167786681 G A TCP10 Silent p.P319P 0.25 TCGA-CN-A63W-01 6 168475987 168475987 T C FRMD1 Missense_Mutation p.Q81R 0.27 tolerated(0.49) benign(0.247) TCGA-CN-A63W-01 6 25983648 25983648 G A TRIM38 Silent p.E377E 0.41 TCGA-CN-A63W-01 6 25983800 25983800 G T TRIM38 Missense_Mutation p.G428V 0.32 tolerated(0.29) benign(0.006) TCGA-CN-A63W-01 6 26056301 26056301 T C HIST1H1C Missense_Mutation p.K119R 0.31 tolerated(0.08) unknown(0) TCGA-CN-A63W-01 6 27860843 27860843 C A HIST1H2AM Nonsense_Mutation p.G29* 0.44 TCGA-CN-A63W-01 6 31747892 31747892 G A VARS Silent p.R988R 0.39 TCGA-CN-A63W-01 6 32049365 32049366 - G RNA5SP206 5'Flank 0.47 TCGA-CN-A63W-01 6 32370924 32370924 G T BTNL2 Missense_Mutation p.A166E 0.24 deleterious(0) possibly_damaging(0.898) TCGA-CN-A63W-01 6 41715118 41715118 C A PGC 5'UTR 0.38 TCGA-CN-A63W-01 6 44337832 44337832 C T SPATS1 Missense_Mutation p.P247L 0.49 deleterious(0) probably_damaging(0.998) TCGA-CN-A63W-01 6 49819761 49819761 C T CRISP1 Missense_Mutation p.A50T 0.30 tolerated(0.64) benign(0.005) TCGA-CN-A63W-01 6 51889466 51889466 G A PKHD1 Silent p.Y1714Y 0.48 TCGA-CN-A63W-01 6 55381332 55381332 G A HMGCLL1 Missense_Mutation p.P153S 0.50 deleterious(0) probably_damaging(0.954) TCGA-CN-A63W-01 6 62442634 62442634 G C KHDRBS2 Missense_Mutation p.D282E 0.26 tolerated(1) benign(0.003) TCGA-CN-A63W-01 6 62887155 62887155 C A KHDRBS2 Missense_Mutation p.V52F 0.35 deleterious(0.01) benign(0.235) TCGA-CN-A63W-01 6 7229573 7229573 C T RREB1 Missense_Mutation p.P414L 0.31 tolerated(0.66) benign(0.155) TCGA-CN-A63W-01 6 7584228 7584228 G C DSP Missense_Mutation p.E2245Q 0.49 probably_damaging(0.986) TCGA-CN-A63W-01 6 80197043 80197043 C T LCA5 Missense_Mutation p.G591D 0.38 tolerated(0.5) benign(0.001) TCGA-CN-A63W-01 6 84371301 84371301 T C SNAP91 Missense_Mutation p.I124M 0.26 deleterious(0) unknown(0) TCGA-CN-A63W-01 6 87967926 87967926 G C ZNF292 Missense_Mutation p.V1527L 0.47 tolerated_low_confidence(0.14) benign(0.04) TCGA-CN-A63W-01 6 90453420 90453420 T A MDN1 Missense_Mutation p.T1398S 0.32 possibly_damaging(0.764) TCGA-CN-A63W-01 6 90572294 90572294 A T CASP8AP2 RNA 0.42 TCGA-CN-A63W-01 6 97051502 97051502 C G FHL5 Missense_Mutation p.H5D 0.49 tolerated(0.06) benign(0.013) TCGA-CN-A63W-01 7 100087211 100087211 G T NYAP1 Missense_Mutation p.G623C 0.43 deleterious(0.02) probably_damaging(0.995) TCGA-CN-A63W-01 7 100410581 100410582 CC T EPHB4 Frame_Shift_Del p.A636Pfs*14 0.25 TCGA-CN-A63W-01 7 100680662 100680662 A G MUC17 Missense_Mutation p.S1989G 0.37 probably_damaging(0.968) TCGA-CN-A63W-01 7 102956305 102956305 T - DNAJC2 Frame_Shift_Del p.D515Mfs*3 0.37 TCGA-CN-A63W-01 7 103048393 103048393 C A SLC26A5 Missense_Mutation p.G265W 0.29 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 7 107836287 107836287 T C NRCAM Missense_Mutation p.N461D 0.35 tolerated(0.09) benign(0.029) TCGA-CN-A63W-01 7 136938242 136938242 C A PTN Missense_Mutation p.K86N 0.68 tolerated(0.06) probably_damaging(0.966) TCGA-CN-A63W-01 7 143657796 143657796 C A OR2F1 Missense_Mutation p.L245I 0.62 deleterious(0.05) probably_damaging(0.995) TCGA-CN-A63W-01 7 14378328 14378328 C A DGKB Missense_Mutation p.G646V 0.42 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 7 151945083 151945083 C T KMT2C Missense_Mutation p.M812I 0.04 benign(0.027) TCGA-CN-A63W-01 7 19738286 19738286 T C TWISTNB Missense_Mutation p.K224E 0.38 tolerated(1) benign(0) TCGA-CN-A63W-01 7 21639713 21639713 A C DNAH11 Silent p.T992T 0.30 TCGA-CN-A63W-01 7 30963571 30963571 G T AQP1 3'UTR 0.56 TCGA-CN-A63W-01 7 31904566 31904566 G T PDE1C Missense_Mutation p.T307K 0.35 deleterious(0) probably_damaging(0.978) TCGA-CN-A63W-01 7 35009099 35009099 G T DPY19L1 Silent p.S247S 0.45 TCGA-CN-A63W-01 7 36671702 36671702 C A AOAH Missense_Mutation p.R154I 0.35 tolerated(0.26) benign(0.027) TCGA-CN-A63W-01 7 37989816 37989816 G C EPDR1 Missense_Mutation p.G165R 0.19 deleterious(0) probably_damaging(0.997) TCGA-CN-A63W-01 7 45614752 45614752 C A ADCY1 Missense_Mutation p.P204T 0.38 tolerated(0.65) benign(0.002) TCGA-CN-A63W-01 7 47440030 47440030 C A TNS3 Missense_Mutation p.K293N 0.19 deleterious(0) probably_damaging(0.969) TCGA-CN-A63W-01 7 47944861 47944861 A T PKD1L1 Silent p.A528A 0.39 TCGA-CN-A63W-01 7 48353837 48353837 A T ABCA13 Missense_Mutation p.Q3230H 0.27 benign(0.01) TCGA-CN-A63W-01 7 55467659 55467659 G T LANCL2 Missense_Mutation p.Q180H 0.47 tolerated(0.36) probably_damaging(0.995) TCGA-CN-A63W-01 7 6057622 6057622 A G AIMP2 Missense_Mutation p.K174E 0.41 tolerated(0.87) benign(0.138) TCGA-CN-A63W-01 7 6189454 6189454 A G USP42 Missense_Mutation p.S543G 0.34 tolerated(0.2) benign(0.009) TCGA-CN-A63W-01 7 64498797 64498797 G C CCT6P3 RNA 0.21 TCGA-CN-A63W-01 7 82996929 82996929 G A SEMA3E Silent p.R767R 0.37 TCGA-CN-A63W-01 7 95726843 95726843 G C DYNC1I1 Missense_Mutation p.V626L 0.39 tolerated(0.47) benign(0.008) TCGA-CN-A63W-01 8 109796736 109796736 C G TMEM74 Missense_Mutation p.V198L 0.26 deleterious(0) possibly_damaging(0.573) TCGA-CN-A63W-01 8 110520439 110520439 C A PKHD1L1 Silent p.R3781R 0.13 TCGA-CN-A63W-01 8 110576933 110576933 C - EBAG9 3'UTR 0.27 TCGA-CN-A63W-01 8 110984518 110984518 C A KCNV1 Silent p.L320L 0.25 TCGA-CN-A63W-01 8 113668482 113668482 G A CSMD3 Nonsense_Mutation p.Q969* 0.25 TCGA-CN-A63W-01 8 113668483 113668483 G T CSMD3 Silent p.T968T 0.25 TCGA-CN-A63W-01 8 121705982 121705982 G C SNTB1 Silent p.L246L 0.12 TCGA-CN-A63W-01 8 131861907 131861907 G T ADCY8 Silent p.R785R 0.33 TCGA-CN-A63W-01 8 132052173 132052173 G A ADCY8 Missense_Mutation p.P136L 0.45 tolerated(0.36) probably_damaging(0.981) TCGA-CN-A63W-01 8 133911137 133911137 C A TG Missense_Mutation p.F1104L 0.28 tolerated(0.07) possibly_damaging(0.615) TCGA-CN-A63W-01 8 24339681 24339681 G T ADAM7 Silent p.V244V 0.20 TCGA-CN-A63W-01 8 48839755 48839755 T A PRKDC Silent p.S806S 0.36 TCGA-CN-A63W-01 8 51664595 51664595 A C SNTG1 Missense_Mutation p.K440T 0.22 deleterious(0) probably_damaging(0.945) TCGA-CN-A63W-01 8 52370189 52370189 A T PXDNL Missense_Mutation p.V284E 0.22 deleterious(0) benign(0.102) TCGA-CN-A63W-01 8 55540556 55540556 C A RP1 Missense_Mutation p.L1372I 0.51 tolerated(0.07) benign(0.025) TCGA-CN-A63W-01 8 61137132 61137132 T C CA8 Missense_Mutation p.T197A 0.27 tolerated(0.52) benign(0.001) TCGA-CN-A63W-01 8 73479975 73479975 A T KCNB2 Silent p.A2A 0.22 TCGA-CN-A63W-01 8 73848398 73848398 G C KCNB2 Missense_Mutation p.D270H 0.34 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 8 76463621 76463621 A TG HNF4G Splice_Site p.X118_splice 0.36 TCGA-CN-A63W-01 8 77616341 77616341 C G ZFHX4 Silent p.S6S 0.39 TCGA-CN-A63W-01 8 77618402 77618402 G C ZFHX4 Silent p.T693T 0.18 TCGA-CN-A63W-01 8 91637866 91637866 C A TMEM64 3'UTR 0.29 TCGA-CN-A63W-01 9 100919798 100919798 C A CORO2A Missense_Mutation p.A49S 0.09 deleterious(0.01) probably_damaging(1) TCGA-CN-A63W-01 9 107299059 107299059 C A OR13C3 Missense_Mutation p.L12F 0.41 tolerated_low_confidence(0.14) possibly_damaging(0.461) TCGA-CN-A63W-01 9 112172686 112172686 G A PTPN3 Silent p.S441S 0.33 TCGA-CN-A63W-01 9 116060063 116060063 C A RNF183 Silent p.T134T 0.54 TCGA-CN-A63W-01 9 122004328 122004328 G T BRINP1 Silent p.I192I 0.51 TCGA-CN-A63W-01 9 125486317 125486317 G T OR1L4 Missense_Mutation p.G17C 0.28 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 9 130865985 130865985 C G SLC25A25 Missense_Mutation p.T205R 0.04 deleterious(0.04) possibly_damaging(0.763) TCGA-CN-A63W-01 9 137591783 137591783 C A COL5A1 Silent p.I102I 0.21 TCGA-CN-A63W-01 9 139272616 139272616 C A SNAPC4 Silent p.T1221T 0.46 TCGA-CN-A63W-01 9 139418283 139418283 G C NOTCH1 Missense_Mutation p.L97V 0.55 tolerated(0.5) benign(0.139) TCGA-CN-A63W-01 9 139616668 139616668 C G FAM69B Missense_Mutation p.P133R 0.10 tolerated(0.05) benign(0.019) TCGA-CN-A63W-01 9 141006849 141006849 G A CACNA1B Splice_Site p.X1810_splice 0.39 TCGA-CN-A63W-01 9 141016147 141016147 T A CACNA1B Missense_Mutation p.L2239Q 0.48 tolerated(0.06) probably_damaging(0.999) TCGA-CN-A63W-01 9 286539 286539 C T DOCK8 Missense_Mutation p.L79F 0.73 tolerated(0.71) benign(0.073) TCGA-CN-A63W-01 9 35869556 35869556 G T OR13J1 Silent p.V281V 0.41 TCGA-CN-A63W-01 9 40704232 40704232 C A SPATA31A3 Nonsense_Mutation p.S630* 0.73 TCGA-CN-A63W-01 9 43624937 43624937 G A SPATA31A6 Silent p.F1250F 0.36 TCGA-CN-A63W-01 9 6013855 6013855 C G RANBP6 Missense_Mutation p.A585P 0.65 deleterious(0) probably_damaging(0.966) TCGA-CN-A63W-01 9 72131021 72131021 T C APBA1 Missense_Mutation p.Y369C 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-CN-A63W-01 9 73151799 73151799 C A TRPM3 Silent p.S1398S 0.42 TCGA-CN-A63W-01 9 73399001 73399001 G A TRPM3 Intron 0.39 TCGA-CN-A63W-01 9 79980395 79980395 A T VPS13A Missense_Mutation p.D2744V 0.24 deleterious(0) probably_damaging(1) TCGA-CN-A63W-01 9 86518413 86518413 G A KIF27 Silent p.N340N 0.28 TCGA-CN-A63W-01 9 90502408 90502408 G C SPATA31E1 Missense_Mutation p.E1002D 0.44 tolerated(0.16) possibly_damaging(0.614) TCGA-CN-A63W-01 9 96215058 96215058 G T FAM120AOS 5'UTR 0.32 TCGA-CN-A63W-01 9 96863913 96863922 ATGCAGCTTG - PTPDC1 Frame_Shift_Del p.S693Gfs*7 0.12 TCGA-CN-A63W-01 9 97863975 97863975 G T FANCC 3'UTR 0.37 TCGA-CN-A63W-01 X 104465006 104465006 C A TEX13A Missense_Mutation p.A26S 0.70 tolerated(0.14) benign(0.168) TCGA-CN-A63W-01 X 111698150 111698150 A G ZCCHC16 Missense_Mutation p.H65R 0.73 deleterious(0.04) benign(0.039) TCGA-CN-A63W-01 X 142717766 142717766 T A SLITRK4 Missense_Mutation p.N387Y 0.66 deleterious(0) probably_damaging(0.996) TCGA-CN-A63W-01 X 142718516 142718516 G C SLITRK4 Missense_Mutation p.Q137E 0.76 deleterious(0) probably_damaging(0.981) TCGA-CN-A63W-01 X 144904200 144904200 C A SLITRK2 Missense_Mutation p.S86Y 0.62 deleterious(0.04) possibly_damaging(0.903) TCGA-CN-A63W-01 X 14883255 14883255 T A FANCB Silent p.L126L 0.60 TCGA-CN-A63W-01 X 155234999 155234999 T A IL9R Missense_Mutation p.F212L 0.65 tolerated(0.16) benign(0.01) TCGA-CN-A63W-01 X 32429885 32429885 A C DMD Missense_Mutation p.M1406R 0.53 benign(0.092) TCGA-CN-A63W-01 X 32536238 32536238 C A DMD Missense_Mutation p.D727Y 0.70 probably_damaging(0.986) TCGA-CN-A63W-01 X 36091373 36091373 A G CHDC2 Missense_Mutation p.K103R 0.47 tolerated(0.08) benign(0.038) TCGA-CN-A63W-01 X 47486251 47486251 A G CFP Silent p.P287P 0.69 TCGA-CN-A63W-01 X 49855411 49855411 C G CLCN5 Missense_Mutation p.T743S 0.58 tolerated(1) benign(0) TCGA-CN-A63W-01 X 63413215 63413215 C G AMER1 5'UTR 0.74 TCGA-CN-A63W-01 X 77529023 77529024 CA - CYSLTR1 Frame_Shift_Del p.C74Hfs*19 0.37 TCGA-CN-A63W-01 X 84363828 84363828 C G SATL1 Missense_Mutation p.M49I 0.61 tolerated(1) benign(0) TCGA-CN-A63Y-01 10 101639929 101639929 G A DNMBP Missense_Mutation p.S1396L 0.19 deleterious(0.01) benign(0.124) TCGA-CN-A63Y-01 10 88459051 88459051 G A LDB3 Intron 0.20 TCGA-CN-A63Y-01 11 212415 212415 G A RIC8A Splice_Site p.X324_splice 0.16 TCGA-CN-A63Y-01 11 33308479 33308479 G A HIPK3 Silent p.Q173Q 0.27 TCGA-CN-A63Y-01 11 65338432 65338432 G A SSSCA1 Missense_Mutation p.D83N 0.26 deleterious(0) probably_damaging(0.984) TCGA-CN-A63Y-01 11 687913 687913 G C DEAF1 Nonsense_Mutation p.S221* 0.17 TCGA-CN-A63Y-01 12 122277703 122277703 G C HPD Missense_Mutation p.F371L 0.17 tolerated(0.13) benign(0.001) TCGA-CN-A63Y-01 12 123082440 123082440 G A KNTC1 Silent p.T1506T 0.17 TCGA-CN-A63Y-01 12 133435802 133435802 C G CHFR Missense_Mutation p.D267H 0.17 deleterious(0.04) benign(0.014) TCGA-CN-A63Y-01 12 18234143 18234143 C G RERGL Missense_Mutation p.K200N 0.39 deleterious(0) benign(0.443) TCGA-CN-A63Y-01 12 27116343 27116343 C T FGFR1OP2 Silent p.D193D 0.20 TCGA-CN-A63Y-01 12 39756911 39756911 G A KIF21A Silent p.L336L 0.21 TCGA-CN-A63Y-01 12 53621202 53621202 C A RARG Missense_Mutation p.S43I 0.19 tolerated_low_confidence(0.15) benign(0.078) TCGA-CN-A63Y-01 12 55026033 55026033 T C LACRT Missense_Mutation p.N82S 0.22 tolerated_low_confidence(0.29) possibly_damaging(0.486) TCGA-CN-A63Y-01 12 56397864 56397864 C T SUOX Missense_Mutation p.R231C 0.07 deleterious(0.03) benign(0.104) TCGA-CN-A63Y-01 12 57626558 57626558 G A SHMT2 Silent p.V263V 0.23 TCGA-CN-A63Y-01 12 57628184 57628184 C G SHMT2 3'UTR 0.31 TCGA-CN-A63Y-01 12 6646377 6646377 C A GAPDH Silent p.I146I 0.12 TCGA-CN-A63Y-01 12 66814548 66814548 C T GRIP1 Missense_Mutation p.G545E 0.13 deleterious(0.01) probably_damaging(0.979) TCGA-CN-A63Y-01 12 69140553 69140553 C T SLC35E3 Silent p.L132L 0.19 TCGA-CN-A63Y-01 12 8212398 8212398 G A C3AR1 Silent p.I128I 0.16 TCGA-CN-A63Y-01 13 21742369 21742369 G A SKA3 Silent p.I167I 0.24 TCGA-CN-A63Y-01 13 38160373 38160373 G A POSTN Silent p.D266D 0.22 TCGA-CN-A63Y-01 13 39261962 39261962 G A FREM2 Missense_Mutation p.G161R 0.25 tolerated(0.09) benign(0.005) TCGA-CN-A63Y-01 13 43930251 43930251 C G ENOX1 Missense_Mutation p.K209N 0.22 deleterious(0.03) possibly_damaging(0.767) TCGA-CN-A63Y-01 13 70514196 70514196 C T KLHL1 Missense_Mutation p.M330I 0.17 tolerated(0.05) benign(0.03) TCGA-CN-A63Y-01 13 96242575 96242575 G C DZIP1 Missense_Mutation p.Q601E 0.15 tolerated(0.14) benign(0.004) TCGA-CN-A63Y-01 13 98655279 98655279 G A IPO5 Silent p.L513L 0.11 TCGA-CN-A63Y-01 14 29237845 29237845 G C FOXG1 Missense_Mutation p.E454Q 0.17 tolerated_low_confidence(0.06) benign(0.027) TCGA-CN-A63Y-01 14 35477865 35477865 G C SRP54 Missense_Mutation p.K131N 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-CN-A63Y-01 14 50472359 50472359 G A C14orf182 Silent p.F53F 0.17 TCGA-CN-A63Y-01 14 58932576 58932576 A C KIAA0586 Missense_Mutation p.T748P 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A63Y-01 14 94776138 94776138 C T SERPINA6 Missense_Mutation p.M273I 0.23 tolerated(0.07) benign(0.235) TCGA-CN-A63Y-01 15 101872144 101872144 C G PCSK6 Missense_Mutation p.E650Q 0.16 tolerated(0.13) possibly_damaging(0.907) TCGA-CN-A63Y-01 15 43668716 43668716 C T TUBGCP4 Nonsense_Mutation p.Q75* 0.18 TCGA-CN-A63Y-01 15 44037259 44037259 C G PDIA3 5'Flank 0.19 TCGA-CN-A63Y-01 15 51975586 51975586 G A SCG3 Missense_Mutation p.D118N 0.15 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-CN-A63Y-01 15 64968080 64968080 G A ZNF609 Silent p.Q1009Q 0.20 TCGA-CN-A63Y-01 15 72338247 72338247 C A MYO9A Missense_Mutation p.D220Y 0.27 deleterious(0) probably_damaging(1) TCGA-CN-A63Y-01 16 14340402 14340402 C T MKL2 Missense_Mutation p.R429C 0.20 deleterious(0) probably_damaging(1) TCGA-CN-A63Y-01 16 1501640 1501640 G A CLCN7 Silent p.L477L 0.11 TCGA-CN-A63Y-01 16 20975195 20975195 C T DNAH3 Silent p.T3337T 0.25 TCGA-CN-A63Y-01 16 2550908 2550908 C T TBC1D24 Silent p.F543F 0.10 TCGA-CN-A63Y-01 16 2815912 2815912 C T SRRM2 Nonsense_Mutation p.Q1795* 0.25 TCGA-CN-A63Y-01 16 28900216 28900216 C G ATP2A1 Missense_Mutation p.S346C 0.21 deleterious(0) probably_damaging(1) TCGA-CN-A63Y-01 16 3707065 3707065 G A DNASE1 Missense_Mutation p.A168T 0.20 deleterious(0.02) possibly_damaging(0.597) TCGA-CN-A63Y-01 16 70557288 70557288 G C COG4 Silent p.L53L 0.18 TCGA-CN-A63Y-01 16 72831514 72831514 C T ZFHX3 Silent p.G1689G 0.14 TCGA-CN-A63Y-01 16 90095621 90095621 C T C16orf3 Missense_Mutation p.V44I 0.26 tolerated_low_confidence(0.33) benign(0.208) TCGA-CN-A63Y-01 17 1561562 1561562 C T PRPF8 Silent p.Q1830Q 0.18 TCGA-CN-A63Y-01 17 17783023 17783023 C T TOM1L2 Missense_Mutation p.R232Q 0.20 tolerated(0.09) benign(0.34) TCGA-CN-A63Y-01 17 26912913 26912913 C T SPAG5 Missense_Mutation p.R570K 0.19 tolerated(0.17) benign(0.009) TCGA-CN-A63Y-01 17 29556273 29556273 G A NF1 Silent p.V880V 0.25 TCGA-CN-A63Y-01 17 40845455 40845455 C T CNTNAP1 Missense_Mutation p.R965W 0.20 deleterious(0.01) possibly_damaging(0.621) TCGA-CN-A63Y-01 17 48195580 48195580 C T SAMD14 Missense_Mutation p.R52Q 0.23 tolerated(0.25) probably_damaging(0.97) TCGA-CN-A63Y-01 17 48195607 48195607 C T SAMD14 Missense_Mutation p.R43K 0.24 deleterious(0.05) possibly_damaging(0.79) TCGA-CN-A63Y-01 17 686360 686360 G A RNMTL1 Missense_Mutation p.E118K 0.18 deleterious(0.01) possibly_damaging(0.721) TCGA-CN-A63Y-01 17 80789724 80789725 GA - ZNF750 Frame_Shift_Del p.P203Wfs*18 0.27 TCGA-CN-A63Y-01 17 8354194 8354194 C G NDEL1 Missense_Mutation p.S208C 0.23 deleterious(0.04) possibly_damaging(0.903) TCGA-CN-A63Y-01 18 10539865 10539865 G A NAPG Missense_Mutation p.G122E 0.18 deleterious(0) possibly_damaging(0.884) TCGA-CN-A63Y-01 18 22804669 22804669 G C ZNF521 Silent p.L1071L 0.24 TCGA-CN-A63Y-01 19 13346065 13346065 C T CACNA1A Silent p.L1697L 0.25 TCGA-CN-A63Y-01 19 1489887 1489887 C T PCSK4 Missense_Mutation p.D67N 0.20 tolerated(0.88) possibly_damaging(0.859) TCGA-CN-A63Y-01 19 21991719 21991719 C T ZNF43 Missense_Mutation p.E374K 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CN-A63Y-01 19 33482768 33482768 G A RHPN2 Silent p.P535P 0.18 TCGA-CN-A63Y-01 19 38782595 38782595 G T SPINT2 Missense_Mutation p.W236C 0.27 deleterious(0) probably_damaging(0.971) TCGA-CN-A63Y-01 19 43699264 43699264 C T PSG4 Missense_Mutation p.E291K 0.15 tolerated(0.72) possibly_damaging(0.621) TCGA-CN-A63Y-01 19 43699348 43699348 C T PSG4 Missense_Mutation p.E263K 0.19 tolerated(0.29) possibly_damaging(0.621) TCGA-CN-A63Y-01 19 43702371 43702371 C T PSG4 Missense_Mutation p.E163K 0.20 deleterious(0.01) possibly_damaging(0.808) TCGA-CN-A63Y-01 19 49548273 49548273 C G CGB5 Missense_Mutation p.Q74E 0.24 deleterious(0) probably_damaging(0.999) TCGA-CN-A63Y-01 19 49643235 49643235 C G PPFIA3 Missense_Mutation p.S753C 0.24 deleterious(0) possibly_damaging(0.867) TCGA-CN-A63Y-01 19 50831719 50831719 G A KCNC3 Silent p.P207P 0.11 TCGA-CN-A63Y-01 19 50881514 50881514 T C NR1H2 Missense_Mutation p.F97S 0.18 deleterious(0) probably_damaging(0.979) TCGA-CN-A63Y-01 19 56704176 56704176 C T ZSCAN5B Silent p.Q82Q 0.19 TCGA-CN-A63Y-01 19 8657722 8657722 C G ADAMTS10 Missense_Mutation p.K504N 0.09 deleterious(0.01) benign(0.022) TCGA-CN-A63Y-01 19 9764512 9764512 C T ZNF562 Missense_Mutation p.E132K 0.17 tolerated(0.1) benign(0.314) TCGA-CN-A63Y-01 1 117618364 117618364 C T TTF2 Silent p.F386F 0.14 TCGA-CN-A63Y-01 1 149761760 149761760 G A FCGR1A Missense_Mutation p.R237Q 0.19 tolerated(0.3) benign(0.01) TCGA-CN-A63Y-01 1 149859298 149859298 C G HIST2H2AB Missense_Mutation p.E57Q 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CN-A63Y-01 1 159410358 159410358 C G OR10J1 Silent p.L270L 0.06 TCGA-CN-A63Y-01 1 1686840 1686840 G A NADK Nonsense_Mutation p.Q366* 0.23 TCGA-CN-A63Y-01 1 177915616 177915616 C T SEC16B Missense_Mutation p.V572M 0.25 tolerated(0.06) possibly_damaging(0.507) TCGA-CN-A63Y-01 1 179086512 179086512 C G ABL2 Missense_Mutation p.E455Q 0.15 deleterious(0) probably_damaging(1) TCGA-CN-A63Y-01 1 180064688 180064688 G A CEP350 Missense_Mutation p.E2848K 0.06 possibly_damaging(0.905) TCGA-CN-A63Y-01 1 19180755 19180755 G A TAS1R2 Silent p.L403L 0.15 TCGA-CN-A63Y-01 1 202842517 202842517 C T RP11-480I12.7 RNA 0.24 TCGA-CN-A63Y-01 1 210796934 210796934 C T HHAT Missense_Mutation p.S438L 0.19 tolerated(0.32) benign(0.388) TCGA-CN-A63Y-01 1 214815174 214815174 G C CENPF Missense_Mutation p.E1165Q 0.22 benign(0.295) TCGA-CN-A63Y-01 1 223285720 223285720 T C TLR5 Silent p.K218K 0.14 TCGA-CN-A63Y-01 1 248487009 248487009 G C OR2M7 Missense_Mutation p.L288V 0.24 tolerated(0.08) possibly_damaging(0.45) TCGA-CN-A63Y-01 1 3662748 3662748 G A TP73-AS1 RNA 0.07 TCGA-CN-A63Y-01 1 55472860 55472860 C G BSND Missense_Mutation p.Q155E 0.12 tolerated(0.08) possibly_damaging(0.641) TCGA-CN-A63Y-01 1 7995117 7995117 G A TNFRSF9 Missense_Mutation p.P167L 0.30 tolerated(0.28) benign(0.015) TCGA-CN-A63Y-01 1 99418842 99418842 G C LPPR5 Missense_Mutation p.I135M 0.15 deleterious(0) probably_damaging(1) TCGA-CN-A63Y-01 20 35381201 35381201 G C DSN1 Missense_Mutation p.S354C 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-A63Y-01 20 37356388 37356388 C T SLC32A1 Silent p.L228L 0.23 TCGA-CN-A63Y-01 20 43043163 43043163 C G HNF4A Missense_Mutation p.S170C 0.25 deleterious(0.04) benign(0.359) TCGA-CN-A63Y-01 20 470429 470429 C T CSNK2A1 Missense_Mutation p.D240N 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-CN-A63Y-01 20 55100096 55100096 G C FAM209A Missense_Mutation p.D78H 0.18 tolerated(0.18) probably_damaging(0.997) TCGA-CN-A63Y-01 20 60503417 60503417 C T CDH4 Silent p.Y647Y 0.16 TCGA-CN-A63Y-01 21 19169339 19169339 C T C21orf91 Missense_Mutation p.R75Q 0.16 tolerated(0.1) probably_damaging(0.999) TCGA-CN-A63Y-01 21 36081714 36081714 C G CLIC6 Missense_Mutation p.L593V 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-CN-A63Y-01 21 37603425 37603425 G A DOPEY2 Silent p.Q781Q 0.22 TCGA-CN-A63Y-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-A63Y-01 22 26860540 26860540 G A HPS4 Silent p.L352L 0.17 TCGA-CN-A63Y-01 22 39918485 39918485 G C ATF4 Missense_Mutation p.E312Q 0.27 tolerated(0.11) probably_damaging(0.995) TCGA-CN-A63Y-01 22 42016878 42016878 C A DESI1 5'UTR 0.09 TCGA-CN-A63Y-01 22 50662572 50662572 C T TUBGCP6 Silent p.A756A 0.16 TCGA-CN-A63Y-01 2 109276203 109276203 G A LIMS1 Missense_Mutation p.E109K 0.19 deleterious(0.04) possibly_damaging(0.507) TCGA-CN-A63Y-01 2 131904248 131904248 C T PLEKHB2 Nonsense_Mutation p.R199* 0.22 TCGA-CN-A63Y-01 2 143959724 143959724 C T ARHGAP15 Missense_Mutation p.H63Y 0.23 tolerated(1) benign(0.153) TCGA-CN-A63Y-01 2 152522033 152522033 G A NEB Silent p.F1684F 0.25 TCGA-CN-A63Y-01 2 153575123 153575123 C G ARL6IP6 5'UTR 0.19 TCGA-CN-A63Y-01 2 167055739 167055739 C T SCN9A Missense_Mutation p.D1793N 0.23 tolerated(0.09) benign(0.173) TCGA-CN-A63Y-01 2 167056284 167056284 C T SCN9A Missense_Mutation p.R1611H 0.21 deleterious(0.02) probably_damaging(0.992) TCGA-CN-A63Y-01 2 179247226 179247226 C T OSBPL6 Missense_Mutation p.S563F 0.16 tolerated(0.08) benign(0.025) TCGA-CN-A63Y-01 2 183960311 183960311 C T DUSP19 Silent p.F193F 0.16 TCGA-CN-A63Y-01 2 231774925 231774925 C T GPR55 Silent p.L251L 0.16 TCGA-CN-A63Y-01 2 24290615 24290615 G A SF3B14 3'UTR 0.17 TCGA-CN-A63Y-01 2 61431476 61431476 T C USP34 Missense_Mutation p.K3100R 0.13 tolerated(0.18) benign(0.406) TCGA-CN-A63Y-01 2 7179775 7179775 G T RNF144A Missense_Mutation p.A255S 0.19 deleterious(0.01) possibly_damaging(0.896) TCGA-CN-A63Y-01 2 72968471 72968471 C G EXOC6B Missense_Mutation p.E81Q 0.17 deleterious(0.05) benign(0.438) TCGA-CN-A63Y-01 2 90212193 90212193 C A IGKV3D-11 Silent p.I95I 0.14 TCGA-CN-A63Y-01 2 99012614 99012614 C - CNGA3 Frame_Shift_Del p.F327Lfs*35 0.14 TCGA-CN-A63Y-01 3 10084814 10084814 G A FANCD2 Silent p.L323L 0.24 TCGA-CN-A63Y-01 3 10085242 10085242 G A FANCD2 Missense_Mutation p.R355K 0.15 tolerated(0.14) possibly_damaging(0.615) TCGA-CN-A63Y-01 3 10085540 10085540 G A FANCD2 Missense_Mutation p.E376K 0.28 deleterious(0.05) benign(0.02) TCGA-CN-A63Y-01 3 10420934 10420934 C G ATP2B2 Missense_Mutation p.Q345H 0.38 tolerated(0.08) possibly_damaging(0.701) TCGA-CN-A63Y-01 3 120760566 120760566 G A STXBP5L Missense_Mutation p.D103N 0.14 tolerated(0.11) probably_damaging(0.996) TCGA-CN-A63Y-01 3 121126200 121126200 G A STXBP5L Missense_Mutation p.E924K 0.10 tolerated(0.36) possibly_damaging(0.472) TCGA-CN-A63Y-01 3 122437494 122437494 G A PARP14 Missense_Mutation p.G1499E 0.17 deleterious(0) probably_damaging(1) TCGA-CN-A63Y-01 3 130300675 130300675 C A COL6A6 Missense_Mutation p.P1273Q 0.20 deleterious(0) possibly_damaging(0.888) TCGA-CN-A63Y-01 3 131100765 131100765 C T NUDT16 Silent p.I39I 0.15 TCGA-CN-A63Y-01 3 140695131 140695131 G T SLC25A36 Nonsense_Mutation p.G258* 0.19 TCGA-CN-A63Y-01 3 151162905 151162905 C G IGSF10 Missense_Mutation p.D1622H 0.14 deleterious(0.02) benign(0.024) TCGA-CN-A63Y-01 3 151162930 151162930 C G IGSF10 Missense_Mutation p.Q1613H 0.19 deleterious(0.01) possibly_damaging(0.646) TCGA-CN-A63Y-01 3 183778026 183778026 G A HTR3C Silent p.Q410Q 0.23 TCGA-CN-A63Y-01 3 186302284 186302284 C T DNAJB11 Silent p.L306L 0.07 TCGA-CN-A63Y-01 3 3886722 3886722 G A LRRN1 Missense_Mutation p.E133K 0.10 deleterious(0.05) benign(0.219) TCGA-CN-A63Y-01 3 49395178 49395178 C G GPX1 Missense_Mutation p.E85D 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-A63Y-01 3 49948975 49948975 G A MON1A Silent p.I296I 0.21 TCGA-CN-A63Y-01 3 62860622 62860622 G A CADPS Missense_Mutation p.P28L 0.17 tolerated_low_confidence(0.34) unknown(0) TCGA-CN-A63Y-01 3 67049505 67049505 C G KBTBD8 Silent p.L39L 0.20 TCGA-CN-A63Y-01 4 115751020 115751020 G A NDST4 Nonsense_Mutation p.Q809* 0.31 TCGA-CN-A63Y-01 4 140272760 140272760 G T NAA15 Nonsense_Mutation p.E337* 0.23 TCGA-CN-A63Y-01 4 145659196 145659196 C T HHIP 3'UTR 0.24 TCGA-CN-A63Y-01 4 156632234 156632234 G A GUCY1A3 Missense_Mutation p.R306K 0.21 tolerated(0.12) benign(0.118) TCGA-CN-A63Y-01 4 1941403 1941403 A G WHSC1 Silent p.A593A 0.16 TCGA-CN-A63Y-01 4 85717800 85717800 C T WDFY3 Missense_Mutation p.G1014E 0.18 deleterious(0) possibly_damaging(0.529) TCGA-CN-A63Y-01 4 87703351 87703351 C G PTPN13 Intron 0.26 TCGA-CN-A63Y-01 5 1037993 1037993 G C NKD2 Missense_Mutation p.Q287H 0.19 tolerated(1) probably_damaging(0.989) TCGA-CN-A63Y-01 5 114499269 114499269 G A TRIM36 Nonsense_Mutation p.R82* 0.19 TCGA-CN-A63Y-01 5 140167659 140167659 G A PCDHA1 Missense_Mutation p.R595H 0.19 tolerated_low_confidence(0.06) benign(0.414) TCGA-CN-A63Y-01 5 140182393 140182393 G A PCDHA3 Silent p.A537A 0.23 TCGA-CN-A63Y-01 5 140214112 140214112 C G PCDHA7 Missense_Mutation p.I48M 0.26 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CN-A63Y-01 5 140242608 140242608 G A AC005609.1 Missense_Mutation p.A123V 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.695) TCGA-CN-A63Y-01 5 146971197 146971197 G A JAKMIP2 3'UTR 0.15 TCGA-CN-A63Y-01 5 160973365 160973365 C T GABRB2 Silent p.L44L 0.17 TCGA-CN-A63Y-01 5 35968190 35968190 G A UGT3A1 Missense_Mutation p.S81L 0.17 tolerated(0.31) benign(0.001) TCGA-CN-A63Y-01 5 37051937 37051937 G A NIPBL Silent p.K2337K 0.22 TCGA-CN-A63Y-01 5 37051941 37051941 G A NIPBL Missense_Mutation p.D2339N 0.22 deleterious(0) probably_damaging(0.999) TCGA-CN-A63Y-01 5 37051956 37051956 G A NIPBL Missense_Mutation p.E2344K 0.20 deleterious(0) probably_damaging(0.998) TCGA-CN-A63Y-01 5 43139394 43139394 C G ZNF131 Missense_Mutation p.I118M 0.22 deleterious(0.04) benign(0.055) TCGA-CN-A63Y-01 5 50111356 50111356 C T PARP8 Nonsense_Mutation p.Q556* 0.20 TCGA-CN-A63Y-01 5 64484001 64484001 C G ADAMTS6 Missense_Mutation p.G918R 0.18 deleterious(0) probably_damaging(0.999) TCGA-CN-A63Y-01 5 74041581 74041581 C G GFM2 Missense_Mutation p.E257D 0.24 tolerated(0.38) benign(0.062) TCGA-CN-A63Y-01 5 79026961 79026961 C G CMYA5 Missense_Mutation p.F791L 0.21 possibly_damaging(0.899) TCGA-CN-A63Y-01 6 117866741 117866741 C T DCBLD1 Silent p.L532L 0.25 TCGA-CN-A63Y-01 6 143096012 143096012 C G HIVEP2 5'UTR 0.33 TCGA-CN-A63Y-01 6 155143453 155143453 C T SCAF8 Silent p.V612V 0.04 TCGA-CN-A63Y-01 6 157150436 157150436 C T ARID1B Nonsense_Mutation p.Q540* 0.07 TCGA-CN-A63Y-01 6 31323370 31323370 C T HLA-B Splice_Site p.X207_splice 0.19 TCGA-CN-A63Y-01 6 32023946 32023946 C T TNXB Missense_Mutation p.E2717K 0.18 benign(0.011) TCGA-CN-A63Y-01 6 34846350 34846350 C T TAF11 3'UTR 0.17 TCGA-CN-A63Y-01 6 41897915 41897915 G A BYSL Silent p.Q159Q 0.10 TCGA-CN-A63Y-01 6 47649593 47649593 C T GPR111 Missense_Mutation p.S433L 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-A63Y-01 6 57048881 57048881 C G BAG2 Missense_Mutation p.L177V 0.22 deleterious(0.05) probably_damaging(0.957) TCGA-CN-A63Y-01 6 64416676 64416676 C T PHF3 Silent p.F1207F 0.18 TCGA-CN-A63Y-01 6 6654920 6654920 G A LY86 3'UTR 0.14 TCGA-CN-A63Y-01 6 74078584 74078584 C T OOEP Missense_Mutation p.E125K 0.18 tolerated(0.3) probably_damaging(0.994) TCGA-CN-A63Y-01 7 100421502 100421502 C T EPHB4 Missense_Mutation p.E59K 0.23 deleterious(0) possibly_damaging(0.788) TCGA-CN-A63Y-01 7 102087373 102087373 C G ORAI2 Silent p.V213V 0.10 TCGA-CN-A63Y-01 7 112407287 112407287 C T TMEM168 Missense_Mutation p.D687N 0.23 tolerated(0.24) benign(0.218) TCGA-CN-A63Y-01 7 112555465 112555465 C G C7orf60 Missense_Mutation p.E66D 0.15 tolerated(0.12) benign(0.073) TCGA-CN-A63Y-01 7 128851608 128851608 C A SMO Missense_Mutation p.P645T 0.17 tolerated(0.06) probably_damaging(0.997) TCGA-CN-A63Y-01 7 140453155 140453155 C T BRAF Missense_Mutation p.D594N 0.19 deleterious(0) possibly_damaging(0.803) TCGA-CN-A63Y-01 7 142724130 142724130 G A OR9A2 Silent p.F30F 0.18 TCGA-CN-A63Y-01 7 150773105 150773105 G A SLC4A2 Silent p.R1159R 0.20 TCGA-CN-A63Y-01 7 151845932 151845932 C T KMT2C Nonsense_Mutation p.W4360* 0.21 TCGA-CN-A63Y-01 7 19184632 19184632 G A FERD3L Silent p.N118N 0.29 TCGA-CN-A63Y-01 7 27237897 27237897 C T HOXA13 Missense_Mutation p.E363K 0.23 deleterious(0) probably_damaging(0.999) TCGA-CN-A63Y-01 7 36462273 36462273 G A ANLN Silent p.L777L 0.18 TCGA-CN-A63Y-01 7 36657900 36657900 T C AOAH Intron 0.21 TCGA-CN-A63Y-01 7 5781327 5781327 C G RNF216 Missense_Mutation p.K107N 0.20 tolerated_low_confidence(0.11) benign(0.034) TCGA-CN-A63Y-01 7 8791145 8791145 G A NXPH1 Missense_Mutation p.D188N 0.14 tolerated(0.05) probably_damaging(0.948) TCGA-CN-A63Y-01 7 89856755 89856755 C G STEAP2 Silent p.L321L 0.27 TCGA-CN-A63Y-01 8 100523670 100523670 G A VPS13B Silent p.L1546L 0.29 TCGA-CN-A63Y-01 8 11832092 11832092 G C DEFB136 Missense_Mutation p.S6C 0.18 deleterious_low_confidence(0) unknown(0) TCGA-CN-A63Y-01 8 120429126 120429126 C G NOV Nonsense_Mutation p.S76* 0.25 TCGA-CN-A63Y-01 8 139845345 139845345 C G COL22A1 Missense_Mutation p.R261T 0.21 unknown(0) TCGA-CN-A63Y-01 8 142446099 142446099 C G PTP4A3 3'Flank 0.09 TCGA-CN-A63Y-01 8 27593629 27593629 G A CCDC25 3'UTR 0.18 TCGA-CN-A63Y-01 9 124929130 124929130 G A MORN5 Missense_Mutation p.G44E 0.18 deleterious(0) probably_damaging(1) TCGA-CN-A63Y-01 9 125682207 125682207 C G ZBTB26 Missense_Mutation p.E3Q 0.14 tolerated(0.68) benign(0.01) TCGA-CN-A63Y-01 9 135102294 135102294 G A NTNG2 Missense_Mutation p.E306K 0.25 deleterious(0.01) possibly_damaging(0.642) TCGA-CN-A63Y-01 9 32784684 32784684 C T TMEM215 Missense_Mutation p.S168L 0.18 tolerated(0.15) probably_damaging(0.99) TCGA-CN-A63Y-01 9 34107496 34107496 C G DCAF12 Missense_Mutation p.G134A 0.19 tolerated(0.87) benign(0.006) TCGA-CN-A63Y-01 9 78936474 78936474 G A PCSK5 Missense_Mutation p.E1314K 0.09 tolerated(0.29) benign(0.015) TCGA-CN-A63Y-01 9 84226773 84226773 C T TLE1 Missense_Mutation p.A389T 0.18 tolerated(0.08) benign(0.064) TCGA-CN-A63Y-01 X 111698734 111698734 C T ZCCHC16 Nonsense_Mutation p.R260* 0.29 TCGA-CN-A63Y-01 X 132091057 132091057 G T HS6ST2 Missense_Mutation p.F242L 0.45 deleterious(0.03) possibly_damaging(0.835) TCGA-CN-A63Y-01 X 152159374 152159374 C G PNMA5 Missense_Mutation p.E257Q 0.32 deleterious(0) probably_damaging(1) TCGA-CN-A63Y-01 X 37285149 37285149 G C PRRG1 Missense_Mutation p.G23R 0.48 tolerated(0.53) benign(0.002) TCGA-CN-A63Y-01 X 53560286 53560286 C T HUWE1 Missense_Mutation p.G4370D 0.33 unknown(0) TCGA-CN-A63Y-01 Y 6939823 6939823 G A TBL1Y Silent p.L282L 0.30 TCGA-CN-A640-01 10 17271591 17271591 C T VIM Missense_Mutation p.P57L 0.17 tolerated(0.16) benign(0.278) TCGA-CN-A640-01 10 24762778 24762779 - ATA KIAA1217 In_Frame_Ins p.N491dup 0.11 TCGA-CN-A640-01 10 58117886 58117886 G C ZWINT 3'UTR 0.13 TCGA-CN-A640-01 11 132527123 132527123 G A OPCML Missense_Mutation p.R87C 0.08 deleterious(0) probably_damaging(1) TCGA-CN-A640-01 11 2424709 2424709 G A TSSC4 Silent p.E282E 0.19 TCGA-CN-A640-01 11 30032364 30032364 G A KCNA4 Missense_Mutation p.S621F 0.10 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-CN-A640-01 12 100042352 100042352 G A FAM71C Missense_Mutation p.V134I 0.04 tolerated(0.05) benign(0.001) TCGA-CN-A640-01 12 6657690 6657690 G A IFFO1 Silent p.D420D 0.15 TCGA-CN-A640-01 12 69250131 69250131 C A CPM 3'UTR 0.09 TCGA-CN-A640-01 13 47243286 47243286 G A LRCH1 Missense_Mutation p.E192K 0.17 deleterious(0) possibly_damaging(0.883) TCGA-CN-A640-01 13 88329446 88329446 C T SLITRK5 Silent p.T601T 0.11 TCGA-CN-A640-01 14 56233184 56233184 C T RP11-813I20.2 Intron 0.13 TCGA-CN-A640-01 14 78140550 78140550 G A ALKBH1 Missense_Mutation p.L259F 0.16 deleterious(0.02) possibly_damaging(0.691) TCGA-CN-A640-01 15 26825563 26825563 G A GABRB3 Silent p.G195G 0.15 TCGA-CN-A640-01 15 28389948 28389948 G A HERC2 Nonsense_Mutation p.R3671* 0.18 TCGA-CN-A640-01 15 51791379 51791379 G A DMXL2 Missense_Mutation p.H1348Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-CN-A640-01 16 2817460 2817460 C G SRRM2 Missense_Mutation p.L2311V 0.11 probably_damaging(0.992) TCGA-CN-A640-01 16 2818013 2818013 C G SRRM2 Missense_Mutation p.S2495C 0.13 probably_damaging(0.995) TCGA-CN-A640-01 16 2818127 2818127 C A SRRM2 Missense_Mutation p.S2533Y 0.09 probably_damaging(0.996) TCGA-CN-A640-01 16 28618394 28618394 A G SULT1A1 Missense_Mutation p.V126A 0.12 deleterious(0) possibly_damaging(0.813) TCGA-CN-A640-01 16 67963886 67963886 C G CTRL Missense_Mutation p.R249P 0.04 deleterious(0) probably_damaging(0.995) TCGA-CN-A640-01 16 75269680 75269680 C T BCAR1 Missense_Mutation p.D419N 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-CN-A640-01 17 26488204 26488204 G A NLK Silent p.L221L 0.09 TCGA-CN-A640-01 17 33807104 33807104 C G SLFN12L Missense_Mutation p.G42A 0.15 deleterious(0) probably_damaging(1) TCGA-CN-A640-01 17 35295563 35295563 C T LHX1 Silent p.A23A 0.15 TCGA-CN-A640-01 17 39150381 39150381 G C KRTAP3-3 5'UTR 0.16 TCGA-CN-A640-01 17 58289457 58289457 G A USP32 Missense_Mutation p.R703C 0.20 deleterious(0) probably_damaging(0.988) TCGA-CN-A640-01 17 7578461 7578462 CG - TP53 Frame_Shift_Del p.V157Pfs*23 0.29 TCGA-CN-A640-01 17 80051476 80051476 C T FASN Missense_Mutation p.R151K 0.15 tolerated(1) benign(0) TCGA-CN-A640-01 18 6982553 6982553 C T LAMA1 Missense_Mutation p.V1945M 0.13 deleterious(0.02) benign(0.004) TCGA-CN-A640-01 19 14710549 14710549 G C CLEC17A Missense_Mutation p.A223P 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-CN-A640-01 19 33892728 33892728 G T PEPD Missense_Mutation p.T289N 0.16 deleterious(0) probably_damaging(1) TCGA-CN-A640-01 19 39597658 39597658 C T PAPL Silent p.Y395Y 0.08 TCGA-CN-A640-01 19 41008367 41008367 C T SPTBN4 Missense_Mutation p.R386C 0.16 deleterious(0) possibly_damaging(0.827) TCGA-CN-A640-01 19 58290798 58290798 G A ZNF586 Silent p.Q281Q 0.12 TCGA-CN-A640-01 19 7987597 7987597 C T SNAPC2 Missense_Mutation p.P318L 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-CN-A640-01 1 101188642 101188642 A G VCAM1 Missense_Mutation p.K136R 0.09 tolerated(0.26) benign(0.011) TCGA-CN-A640-01 1 11078818 11078818 C G TARDBP Nonsense_Mutation p.S144* 0.11 TCGA-CN-A640-01 1 147090824 147090824 C T BCL9 Missense_Mutation p.S288F 0.09 deleterious(0.01) benign(0.347) TCGA-CN-A640-01 1 151993809 151993809 C G NBPF18P RNA 0.06 TCGA-CN-A640-01 1 159176123 159176123 G C DARC Silent p.V300V 0.09 TCGA-CN-A640-01 1 174417676 174417676 A G GPR52 Missense_Mutation p.I143V 0.10 tolerated(0.12) probably_damaging(0.999) TCGA-CN-A640-01 1 179523631 179523631 G C NPHS2 Missense_Mutation p.I258M 0.15 deleterious(0) probably_damaging(1) TCGA-CN-A640-01 1 52260186 52260186 C G NRD1 Silent p.L979L 0.12 TCGA-CN-A640-01 20 39991121 39991121 C T EMILIN3 Missense_Mutation p.R363H 0.18 deleterious(0) probably_damaging(0.98) TCGA-CN-A640-01 22 50897784 50897786 CTC - SBF1 In_Frame_Del p.E1242del 0.20 TCGA-CN-A640-01 2 112621425 112621425 C T ANAPC1 Silent p.Q293Q 0.16 TCGA-CN-A640-01 2 189861176 189861176 G A COL3A1 Missense_Mutation p.R572Q 0.16 unknown(0) TCGA-CN-A640-01 2 191896239 191896239 G A STAT4 Missense_Mutation p.S683L 0.18 tolerated(0.22) benign(0.004) TCGA-CN-A640-01 2 227871917 227871917 A G COL4A4 3'UTR 0.17 TCGA-CN-A640-01 3 150931664 150931664 C T P2RY14 Missense_Mutation p.M147I 0.06 tolerated(0.23) benign(0.003) TCGA-CN-A640-01 3 3076402 3076402 C G CNTN4 Missense_Mutation p.H624D 0.14 deleterious(0.03) possibly_damaging(0.643) TCGA-CN-A640-01 3 38941399 38941399 G A SCN11A Missense_Mutation p.R670C 0.14 deleterious(0) probably_damaging(0.937) TCGA-CN-A640-01 4 186288207 186288207 A G LRP2BP 3'UTR 0.13 TCGA-CN-A640-01 4 187530425 187530425 G C FAT1 Nonsense_Mutation p.S3373* 0.16 TCGA-CN-A640-01 4 96166269 96166269 C T UNC5C Missense_Mutation p.E268K 0.11 tolerated(0.07) probably_damaging(0.986) TCGA-CN-A640-01 5 115152124 115152124 C T CDO1 5'UTR 0.13 TCGA-CN-A640-01 5 132535059 132535059 C T FSTL4 Missense_Mutation p.A753T 0.24 deleterious(0.02) possibly_damaging(0.754) TCGA-CN-A640-01 5 140214188 140214188 C G PCDHA7 Missense_Mutation p.L74V 0.14 deleterious_low_confidence(0) benign(0.256) TCGA-CN-A640-01 5 31511215 31511215 C T DROSHA Silent p.G453G 0.15 TCGA-CN-A640-01 6 109787413 109787413 C G ZBTB24 Missense_Mutation p.E579Q 0.12 deleterious(0.01) possibly_damaging(0.653) TCGA-CN-A640-01 6 129475783 129475783 T C LAMA2 Silent p.G387G 0.09 TCGA-CN-A640-01 6 129799900 129799900 C T LAMA2 Missense_Mutation p.P2505L 0.23 deleterious(0.01) probably_damaging(1) TCGA-CN-A640-01 6 138617995 138617995 G T KIAA1244 Missense_Mutation p.R1184L 0.16 deleterious(0) possibly_damaging(0.523) TCGA-CN-A640-01 6 30881699 30881700 - G GTF2H4 Frame_Shift_Ins p.T444Dfs*18 0.24 TCGA-CN-A640-01 6 90362821 90362821 C A MDN1 Missense_Mutation p.D5239Y 0.11 unknown(0) TCGA-CN-A640-01 7 138579166 138579166 G A KIAA1549 Silent p.I1318I 0.14 TCGA-CN-A640-01 7 6441974 6441974 C T RAC1 Missense_Mutation p.A178V 0.16 deleterious(0) probably_damaging(0.986) TCGA-CN-A640-01 7 6797473 6797473 G A RSPH10B2 Silent p.V55V 0.15 TCGA-CN-A640-01 7 82544169 82544169 G T PCLO Missense_Mutation p.A4378D 0.18 unknown(0) TCGA-CN-A640-01 8 104240362 104240362 T C BAALC 3'UTR 0.09 TCGA-CN-A640-01 8 144644852 144644852 G C GSDMD Missense_Mutation p.Q411H 0.14 deleterious(0) probably_damaging(0.984) TCGA-CN-A640-01 8 53045825 53045825 C G ST18 Silent p.V779V 0.14 TCGA-CN-A640-01 8 54934836 54934837 - GCG TCEA1 5'UTR 0.41 TCGA-CN-A640-01 8 75757695 75757695 C G PI15 Missense_Mutation p.R202G 0.10 tolerated(0.12) benign(0.219) TCGA-CN-A640-01 9 109701361 109701361 C G ZNF462 Missense_Mutation p.P2134A 0.20 benign(0.049) TCGA-CN-A640-01 9 112144691 112144691 C T PTPN3 Missense_Mutation p.V807I 0.13 tolerated(0.26) benign(0.213) TCGA-CN-A640-01 9 21971180 21971180 C - CDKN2A Frame_Shift_Del p.A60Rfs*86 0.40 TCGA-CN-A640-01 X 122805561 122805561 G C THOC2 Missense_Mutation p.L274V 0.17 deleterious(0) benign(0.082) TCGA-CN-A640-01 X 50658862 50658862 G T BMP15 Missense_Mutation p.R145L 0.12 tolerated(0.05) benign(0.003) TCGA-CN-A640-01 X 69255284 69255284 G T EDA Missense_Mutation p.R334L 0.12 tolerated_low_confidence(0.13) possibly_damaging(0.511) TCGA-CN-A640-01 X 76890140 76890140 G A ATRX Missense_Mutation p.S1585F 0.12 probably_damaging(0.986) TCGA-CN-A640-01 X 99663451 99663451 C T PCDH19 Missense_Mutation p.A49T 0.27 tolerated(0.3) possibly_damaging(0.507) TCGA-CN-A641-01 10 102988516 102988516 C T LBX1 Silent p.P19P 0.41 TCGA-CN-A641-01 10 118460580 118460580 C A HSPA12A Silent p.L105L 0.31 TCGA-CN-A641-01 10 18331714 18331714 G T SLC39A12 Missense_Mutation p.W676C 0.33 deleterious(0) probably_damaging(1) TCGA-CN-A641-01 10 27349299 27349299 C T ANKRD26 Missense_Mutation p.M513I 0.27 tolerated(0.35) benign(0.001) TCGA-CN-A641-01 10 32800611 32800611 C G CCDC7 Intron 0.32 TCGA-CN-A641-01 10 50901953 50901953 C A C10orf53 Intron 0.35 TCGA-CN-A641-01 10 61005450 61005450 T G PHYHIPL 3'UTR 0.34 TCGA-CN-A641-01 10 77818527 77818527 G T C10orf11 Missense_Mutation p.V140L 0.27 tolerated(0.08) benign(0.266) TCGA-CN-A641-01 10 83635834 83635834 C A NRG3 Silent p.P246P 0.22 TCGA-CN-A641-01 10 96006283 96006283 G T PLCE1 Nonsense_Mutation p.G1001* 0.33 TCGA-CN-A641-01 10 96256890 96256890 T C TBC1D12 Missense_Mutation p.V458A 0.36 tolerated(0.18) probably_damaging(0.99) TCGA-CN-A641-01 11 113661717 113661717 C T ATF4P4 RNA 0.12 TCGA-CN-A641-01 11 1264610 1264610 C A MUC5B Missense_Mutation p.T2167N 0.45 unknown(0) TCGA-CN-A641-01 11 128993380 128993380 C A ARHGAP32 Silent p.A121A 0.35 TCGA-CN-A641-01 11 17741321 17741322 - G MYOD1 5'UTR 0.26 TCGA-CN-A641-01 11 18159265 18159265 G C MRGPRX3 Missense_Mutation p.W172C 0.27 deleterious(0.04) benign(0.053) TCGA-CN-A641-01 11 40137647 40137647 T A LRRC4C Missense_Mutation p.N66Y 0.26 deleterious(0) benign(0.131) TCGA-CN-A641-01 11 45246018 45246018 C T PRDM11 Silent p.I331I 0.33 TCGA-CN-A641-01 11 4615567 4615567 C G OR52I1 Missense_Mutation p.A100G 0.29 tolerated(0.28) benign(0.341) TCGA-CN-A641-01 11 48346829 48346829 G T OR4C3 Nonsense_Mutation p.E113* 0.12 TCGA-CN-A641-01 11 4936656 4936656 G C OR51G2 Missense_Mutation p.L80V 0.28 tolerated(0.15) benign(0.213) TCGA-CN-A641-01 11 55433374 55433374 G T OR4C6 Silent p.V244V 0.27 TCGA-CN-A641-01 11 55890061 55890061 C A OR8H3 Missense_Mutation p.D71E 0.22 deleterious(0.01) possibly_damaging(0.899) TCGA-CN-A641-01 11 55944850 55944850 G A OR5J2 Missense_Mutation p.G253S 0.29 deleterious(0.04) possibly_damaging(0.687) TCGA-CN-A641-01 11 56143644 56143644 T C OR8U1 Missense_Mutation p.M182T 0.15 tolerated(0.14) possibly_damaging(0.472) TCGA-CN-A641-01 11 56756990 56756990 T C OR5AK2 Missense_Mutation p.V201A 0.29 tolerated(0.6) benign(0.026) TCGA-CN-A641-01 11 5809420 5809420 C A OR52N1 Silent p.G209G 0.22 TCGA-CN-A641-01 11 65792739 65792739 C T CATSPER1 Missense_Mutation p.R371H 0.14 tolerated(1) benign(0.001) TCGA-CN-A641-01 11 802261 802261 C A PIDD Silent p.L370L 0.39 TCGA-CN-A641-01 11 88911936 88911936 G T TYR Missense_Mutation p.W272L 0.27 deleterious(0) probably_damaging(1) TCGA-CN-A641-01 11 92507248 92507248 G C FAT3 Missense_Mutation p.G1413R 0.15 probably_damaging(0.988) TCGA-CN-A641-01 12 109972270 109972270 C T UBE3B Intron 0.36 TCGA-CN-A641-01 12 11506108 11506108 G A PRB1 Missense_Mutation p.P177L 0.23 tolerated_low_confidence(0.2) unknown(0) TCGA-CN-A641-01 12 122079195 122079195 G T ORAI1 Silent p.T186T 0.40 TCGA-CN-A641-01 12 124915248 124915248 C T NCOR2 Missense_Mutation p.R323Q 0.12 unknown(0) TCGA-CN-A641-01 12 130185208 130185208 T C TMEM132D Missense_Mutation p.R39G 0.30 deleterious(0.02) possibly_damaging(0.757) TCGA-CN-A641-01 12 1481118 1481118 G A ERC1 Missense_Mutation p.R967H 0.33 deleterious(0) probably_damaging(0.938) TCGA-CN-A641-01 12 18524216 18524216 G T PIK3C2G Silent p.A576A 0.28 TCGA-CN-A641-01 12 21614000 21614000 G A PYROXD1 Silent p.K264K 0.29 TCGA-CN-A641-01 12 3129865 3129865 C G TEAD4 Missense_Mutation p.R217G 0.30 deleterious(0.01) probably_damaging(0.968) TCGA-CN-A641-01 12 41323676 41323676 C A CNTN1 Missense_Mutation p.T192K 0.34 tolerated(0.37) benign(0.03) TCGA-CN-A641-01 12 71029627 71029627 C T PTPRB Missense_Mutation p.R92Q 0.42 tolerated_low_confidence(0.16) benign(0.007) TCGA-CN-A641-01 12 94794751 94794752 CT G CCDC41 Frame_Shift_Del p.E142Kfs*32 0.19 TCGA-CN-A641-01 12 97084960 97084960 T C C12orf55 Missense_Mutation p.Y2046H 0.27 deleterious(0) benign(0.005) TCGA-CN-A641-01 12 97112295 97112295 C G C12orf55 Missense_Mutation p.L2267V 0.26 tolerated(0.05) benign(0.006) TCGA-CN-A641-01 13 111532019 111532019 C T ANKRD10 Missense_Mutation p.V410M 0.66 deleterious(0.01) possibly_damaging(0.587) TCGA-CN-A641-01 13 26959403 26959403 G T CDK8 Missense_Mutation p.L190F 0.65 tolerated(0.06) possibly_damaging(0.629) TCGA-CN-A641-01 13 53419047 53419047 T A PCDH8 Missense_Mutation p.E954V 0.67 deleterious(0) probably_damaging(0.999) TCGA-CN-A641-01 14 20249049 20249049 G T OR4M1 Missense_Mutation p.A190S 0.17 tolerated(0.07) benign(0.014) TCGA-CN-A641-01 14 20344870 20344870 C A OR4K2 Silent p.S148S 0.19 TCGA-CN-A641-01 14 22265633 22265633 C A TRAV8-1 Missense_Mutation p.L15M 0.18 tolerated(0.05) possibly_damaging(0.582) TCGA-CN-A641-01 14 23398574 23398574 T C PRMT5 5'UTR 0.30 TCGA-CN-A641-01 14 23872602 23872602 G T MYH6 Missense_Mutation p.H285N 0.29 deleterious(0.01) probably_damaging(0.938) TCGA-CN-A641-01 14 44976245 44976245 C A FSCB 5'UTR 0.31 TCGA-CN-A641-01 14 51202259 51202259 A T NIN Missense_Mutation p.V1951E 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-CN-A641-01 14 95034604 95034604 G T SERPINA4 Missense_Mutation p.Q354H 0.30 tolerated(0.3) possibly_damaging(0.755) TCGA-CN-A641-01 15 25925343 25925343 G T ATP10A Missense_Mutation p.T1264N 0.48 deleterious(0) benign(0.004) TCGA-CN-A641-01 15 28458989 28458989 C A HERC2 Nonsense_Mutation p.G2229* 0.50 TCGA-CN-A641-01 15 32930056 32930056 G A ARHGAP11A 3'UTR 0.53 TCGA-CN-A641-01 15 33944969 33944969 G A RYR3 Missense_Mutation p.S1398N 0.08 benign(0.001) TCGA-CN-A641-01 15 42298268 42298268 G A PLA2G4E Missense_Mutation p.H149Y 0.44 tolerated(0.1) probably_damaging(0.998) TCGA-CN-A641-01 15 48905287 48905287 G T FBN1 Missense_Mutation p.P56H 0.43 probably_damaging(0.997) TCGA-CN-A641-01 15 65489281 65489281 G A CILP Missense_Mutation p.L1115F 0.52 deleterious(0) probably_damaging(0.997) TCGA-CN-A641-01 15 65623395 65623395 C A IGDCC3 Silent p.L518L 0.10 TCGA-CN-A641-01 15 72699075 72699075 T G TMEM202 Missense_Mutation p.M157R 0.29 deleterious(0.01) possibly_damaging(0.656) TCGA-CN-A641-01 15 78893755 78893755 A T CHRNA3 Missense_Mutation p.I410K 0.58 tolerated(0.9) benign(0.079) TCGA-CN-A641-01 16 30528315 30528315 C A ITGAL Missense_Mutation p.H962N 0.11 tolerated(0.28) benign(0.026) TCGA-CN-A641-01 16 55895399 55895399 G A CES5A Silent p.N309N 0.21 TCGA-CN-A641-01 16 613930 613930 C G C16orf11 Missense_Mutation p.N212K 0.27 deleterious(0) possibly_damaging(0.853) TCGA-CN-A641-01 17 10206726 10206726 C A MYH13 Missense_Mutation p.K1852N 0.30 deleterious(0) probably_damaging(0.997) TCGA-CN-A641-01 17 10400464 10400464 G C MYH1 Silent p.R1526R 0.10 TCGA-CN-A641-01 17 10443311 10443311 G T MYH2 Missense_Mutation p.H361N 0.27 deleterious(0.01) benign(0.274) TCGA-CN-A641-01 17 19445705 19445705 G A SLC47A1 Splice_Site p.X46_splice 0.37 TCGA-CN-A641-01 17 21477513 21477513 G T AC138710.1 5'Flank 0.33 TCGA-CN-A641-01 17 47041686 47041686 C A GIP Missense_Mutation p.K81N 0.27 deleterious(0) possibly_damaging(0.884) TCGA-CN-A641-01 17 48618684 48618684 C T EPN3 Silent p.S448S 0.24 TCGA-CN-A641-01 17 56399671 56399671 G T BZRAP1 Missense_Mutation p.Q474K 0.18 deleterious(0.04) benign(0.376) TCGA-CN-A641-01 17 57466719 57466719 A G YPEL2 Splice_Site p.X54_splice 0.25 TCGA-CN-A641-01 17 61907804 61907804 C T PSMC5 Silent p.I165I 0.22 TCGA-CN-A641-01 17 66042685 66042686 - G KPNA2 Frame_Shift_Ins p.A523Gfs*6 0.17 TCGA-CN-A641-01 17 66899501 66899501 G C ABCA8 Missense_Mutation p.C806W 0.22 tolerated(0.09) benign(0.072) TCGA-CN-A641-01 17 7577097 7577097 C A TP53 Missense_Mutation p.D281Y 0.60 deleterious(0) probably_damaging(0.999) TCGA-CN-A641-01 17 79225335 79225335 C T SLC38A10 Missense_Mutation p.V675M 0.53 tolerated(0.06) possibly_damaging(0.473) TCGA-CN-A641-01 17 8140698 8140698 C T CTC1 Missense_Mutation p.V263M 0.34 deleterious(0) probably_damaging(0.96) TCGA-CN-A641-01 17 8273201 8273201 C A KRBA2 Missense_Mutation p.V244L 0.34 tolerated(0.38) benign(0.014) TCGA-CN-A641-01 18 10672720 10672720 C A PIEZO2 Missense_Mutation p.S2658I 0.27 deleterious(0) possibly_damaging(0.745) TCGA-CN-A641-01 18 22805054 22805054 T G ZNF521 Missense_Mutation p.N943T 0.27 tolerated(0.68) benign(0.2) TCGA-CN-A641-01 18 5397159 5397159 G T EPB41L3 Silent p.V913V 0.23 TCGA-CN-A641-01 18 55024592 55024592 C T ST8SIA3 Missense_Mutation p.H251Y 0.48 probably_damaging(0.983) TCGA-CN-A641-01 18 55217861 55217861 G A FECH 3'UTR 0.50 TCGA-CN-A641-01 18 74624207 74624207 G T ZNF236 Missense_Mutation p.R936L 0.43 tolerated(0.47) benign(0.007) TCGA-CN-A641-01 18 9513224 9513224 G A RALBP1 Missense_Mutation p.V61M 0.58 deleterious_low_confidence(0.01) benign(0.223) TCGA-CN-A641-01 19 10404974 10404974 C T ICAM5 Missense_Mutation p.T657I 0.09 tolerated(0.11) benign(0.075) TCGA-CN-A641-01 19 10426109 10426109 C A FDX1L Missense_Mutation p.G87V 0.15 deleterious(0) probably_damaging(0.991) TCGA-CN-A641-01 19 12864107 12864107 C G BEST2 Missense_Mutation p.F62L 0.68 deleterious(0) probably_damaging(0.999) TCGA-CN-A641-01 19 37210374 37210375 - A ZNF567 Frame_Shift_Ins p.H222Tfs*5 0.40 TCGA-CN-A641-01 19 44847418 44847418 C T ZNF112 Translation_Start_Site p.M1? 0.48 deleterious(0) benign(0.04) TCGA-CN-A641-01 19 49470081 49470081 T G FTL 3'UTR 0.64 TCGA-CN-A641-01 19 5137683 5137683 A G KDM4B Missense_Mutation p.R813G 0.46 benign(0) TCGA-CN-A641-01 19 53454527 53454527 G T ZNF816 Silent p.L167L 0.60 TCGA-CN-A641-01 19 54135343 54135343 G A DPRX 5'UTR 0.16 TCGA-CN-A641-01 19 54803700 54803700 C A LILRA3 Missense_Mutation p.G42W 0.62 deleterious(0.01) probably_damaging(1) TCGA-CN-A641-01 19 55593652 55593652 C T EPS8L1 Missense_Mutation p.R334C 0.17 deleterious(0) probably_damaging(0.991) TCGA-CN-A641-01 19 5587187 5587187 C A SAFB2 3'UTR 0.43 TCGA-CN-A641-01 19 57133098 57133098 A T ZNF71 Missense_Mutation p.H148L 0.60 deleterious(0) probably_damaging(0.966) TCGA-CN-A641-01 1 102312577 102312577 G T OLFM3 Intron 0.19 TCGA-CN-A641-01 1 103544216 103544216 C - COL11A1 Frame_Shift_Del p.K163Sfs*5 0.25 TCGA-CN-A641-01 1 111217053 111217053 C T KCNA3 Missense_Mutation p.E127K 0.34 tolerated(0.06) benign(0.278) TCGA-CN-A641-01 1 111956943 111956943 C G OVGP1 3'UTR 0.43 TCGA-CN-A641-01 1 112304936 112304936 A T DDX20 Nonsense_Mutation p.R361* 0.29 TCGA-CN-A641-01 1 118623782 118623782 A G SPAG17 Silent p.N717N 0.28 TCGA-CN-A641-01 1 12835781 12835781 G T PRAMEF12 Missense_Mutation p.S128I 0.29 tolerated(0.2) probably_damaging(0.975) TCGA-CN-A641-01 1 1328777 1328777 A G CCNL2 Missense_Mutation p.W220R 0.25 deleterious(0) probably_damaging(1) TCGA-CN-A641-01 1 149915899 149915899 G C OTUD7B Missense_Mutation p.P797A 0.30 tolerated_low_confidence(0.94) benign(0) TCGA-CN-A641-01 1 155311735 155311735 C A ASH1L Missense_Mutation p.D2818Y 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CN-A641-01 1 158587333 158587333 T G SPTA1 Silent p.A2198A 0.14 TCGA-CN-A641-01 1 158670267 158670267 A G OR6K2 Missense_Mutation p.M59T 0.22 deleterious(0) benign(0.411) TCGA-CN-A641-01 1 158746766 158746766 C A OR6N2 Missense_Mutation p.R220S 0.31 tolerated(0.19) benign(0.388) TCGA-CN-A641-01 1 159683862 159683862 G A CRP Missense_Mutation p.P43L 0.31 tolerated(0.14) benign(0.001) TCGA-CN-A641-01 1 160111129 160111129 A G ATP1A2 3'UTR 0.29 TCGA-CN-A641-01 1 162750109 162750109 G T DDR2 3'UTR 0.38 TCGA-CN-A641-01 1 167815220 167815220 C T ADCY10 Intron 0.27 TCGA-CN-A641-01 1 169279307 169279307 A T NME7 Missense_Mutation p.L97Q 0.32 deleterious(0) probably_damaging(0.948) TCGA-CN-A641-01 1 171621464 171621464 C A MYOC Missense_Mutation p.E96D 0.31 tolerated(0.05) probably_damaging(0.999) TCGA-CN-A641-01 1 172414217 172414217 C T C1orf105 Missense_Mutation p.S9F 0.29 tolerated(0.17) possibly_damaging(0.683) TCGA-CN-A641-01 1 172579477 172579477 G T SUCO 3'UTR 0.36 TCGA-CN-A641-01 1 175092758 175092758 G T TNN Missense_Mutation p.G958V 0.39 deleterious(0) probably_damaging(0.97) TCGA-CN-A641-01 1 186037038 186037038 C T HMCN1 Missense_Mutation p.T2593I 0.36 probably_damaging(0.999) TCGA-CN-A641-01 1 192153620 192153620 G C RGS18 Missense_Mutation p.R215P 0.31 deleterious(0) probably_damaging(0.953) TCGA-CN-A641-01 1 196953185 196953185 A T CFHR5 Silent p.T116T 0.37 TCGA-CN-A641-01 1 197026221 197026221 T A F13B Nonsense_Mutation p.K365* 0.42 TCGA-CN-A641-01 1 200555345 200555345 T C KIF14 Missense_Mutation p.D1042G 0.39 deleterious(0) probably_damaging(0.987) TCGA-CN-A641-01 1 236647444 236647444 G A EDARADD 3'Flank 0.33 TCGA-CN-A641-01 1 249210841 249210841 T A PGBD2 Missense_Mutation p.S20T 0.21 tolerated(0.95) benign(0.008) TCGA-CN-A641-01 1 27099913 27099913 C T ARID1A Silent p.A1264A 0.39 TCGA-CN-A641-01 1 34090837 34090837 C T CSMD2 Missense_Mutation p.A1732T 0.25 tolerated(0.53) benign(0.317) TCGA-CN-A641-01 1 3409312 3409312 A C MEGF6 Missense_Mutation p.F1469L 0.32 deleterious(0.02) possibly_damaging(0.643) TCGA-CN-A641-01 1 39889794 39889794 G A MACF1 Missense_Mutation p.R3353K 0.31 benign(0.089) TCGA-CN-A641-01 1 43130566 43130566 G A PPIH Silent p.R92R 0.22 TCGA-CN-A641-01 1 53416550 53416550 T C SCP2 Missense_Mutation p.I108T 0.30 deleterious(0) benign(0.403) TCGA-CN-A641-01 1 54483764 54483764 C T LDLRAD1 Splice_Site p.X7_splice 0.37 TCGA-CN-A641-01 1 62740602 62740602 G A KANK4 Silent p.H58H 0.34 TCGA-CN-A641-01 1 70618226 70618226 C T LRRC40 Silent p.R443R 0.38 TCGA-CN-A641-01 1 77094303 77094303 A G ST6GALNAC3 Splice_Site p.X244_splice 0.42 TCGA-CN-A641-01 1 77987544 77987544 G T AK5 Missense_Mutation p.M448I 0.28 tolerated(0.13) benign(0.135) TCGA-CN-A641-01 1 87797826 87797826 G C LMO4 Missense_Mutation p.W43S 0.31 deleterious(0) probably_damaging(0.999) TCGA-CN-A641-01 1 90058601 90058601 G A LRRC8B Silent p.%3D 0.29 TCGA-CN-A641-01 1 98039334 98039334 C T DPYD Missense_Mutation p.V441I 0.28 tolerated(0.21) benign(0.001) TCGA-CN-A641-01 20 17581473 17581473 A C DSTN Silent p.R32R 0.28 TCGA-CN-A641-01 20 44979515 44979515 C A SLC35C2 Missense_Mutation p.L284F 0.29 deleterious(0.03) possibly_damaging(0.906) TCGA-CN-A641-01 20 45239229 45239229 C T SLC13A3 Missense_Mutation p.V133M 0.33 tolerated(0.16) benign(0.038) TCGA-CN-A641-01 20 55048421 55048421 G A RTFDC1 Missense_Mutation p.R45K 0.31 tolerated(0.2) benign(0.012) TCGA-CN-A641-01 20 56189946 56189946 G A ZBP1 Missense_Mutation p.P167S 0.32 tolerated(0.22) probably_damaging(0.968) TCGA-CN-A641-01 20 62202052 62202052 T A HELZ2 Missense_Mutation p.S150C 0.36 deleterious(0) possibly_damaging(0.784) TCGA-CN-A641-01 21 45843586 45843586 G T TRPM2 Nonsense_Mutation p.E1174* 0.39 TCGA-CN-A641-01 21 47700472 47700472 A G MCM3AP Silent p.A487A 0.37 TCGA-CN-A641-01 22 31324138 31324138 C G MORC2 Missense_Mutation p.Q904H 0.24 deleterious(0) possibly_damaging(0.895) TCGA-CN-A641-01 22 41349589 41349589 A G RBX1 Missense_Mutation p.I37V 0.40 tolerated(0.13) benign(0.001) TCGA-CN-A641-01 2 133542517 133542517 A C NCKAP5 Missense_Mutation p.F623V 0.31 tolerated(0.51) benign(0.117) TCGA-CN-A641-01 2 135596239 135596239 C A ACMSD 5'UTR 0.30 TCGA-CN-A641-01 2 178415579 178415579 C G TTC30B Missense_Mutation p.R638T 0.29 tolerated(0.56) benign(0.045) TCGA-CN-A641-01 2 179404190 179404190 A C TTN Missense_Mutation p.F32868V 0.34 TCGA-CN-A641-01 2 179428837 179428837 C A TTN Missense_Mutation p.R27341L 0.30 TCGA-CN-A641-01 2 179443831 179443831 G T TTN Silent p.G22642G 0.37 TCGA-CN-A641-01 2 196659120 196659120 C A DNAH7 Missense_Mutation p.R3553L 0.26 deleterious(0) probably_damaging(0.984) TCGA-CN-A641-01 2 196825389 196825389 G A DNAH7 Missense_Mutation p.S829L 0.27 tolerated(0.34) benign(0.009) TCGA-CN-A641-01 2 20451388 20451388 C A PUM2 Silent p.P1051P 0.23 TCGA-CN-A641-01 2 210543348 210543348 C T MAP2 Silent p.V105V 0.36 TCGA-CN-A641-01 2 226447479 226447479 T G NYAP2 Missense_Mutation p.L449R 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A641-01 2 231101947 231101947 G A SP140 Missense_Mutation p.R70H 0.31 tolerated(0.15) possibly_damaging(0.693) TCGA-CN-A641-01 2 240969740 240969740 A T OR6B2 Missense_Mutation p.L36H 0.23 deleterious(0) probably_damaging(0.928) TCGA-CN-A641-01 2 44065910 44065910 C T ABCG5 5'UTR 0.33 TCGA-CN-A641-01 2 71762412 71762412 C T DYSF Silent p.C488C 0.26 TCGA-CN-A641-01 2 90249229 90249229 C G IGKV1D-43 Missense_Mutation p.P62R 0.26 deleterious(0) probably_damaging(0.945) TCGA-CN-A641-01 2 96950195 96950195 C T SNRNP200 Silent p.K1431K 0.26 TCGA-CN-A641-01 3 11064040 11064040 G A SLC6A1 Missense_Mutation p.M200I 0.39 tolerated(1) benign(0.01) TCGA-CN-A641-01 3 115395168 115395168 G A GAP43 Silent p.K149K 0.21 TCGA-CN-A641-01 3 119121027 119121027 G A ARHGAP31 Silent p.S476S 0.28 TCGA-CN-A641-01 3 12616417 12616417 G C MKRN2 Missense_Mutation p.G257R 0.42 deleterious(0.03) probably_damaging(0.923) TCGA-CN-A641-01 3 127788488 127788488 G A SEC61A1 Missense_Mutation p.G472R 0.23 deleterious(0.01) benign(0.245) TCGA-CN-A641-01 3 134851755 134851755 G A EPHB1 Silent p.T387T 0.31 TCGA-CN-A641-01 3 148939561 148939567 CAAGTAT - CP Frame_Shift_Del p.I5Vfs*78 0.20 TCGA-CN-A641-01 3 154027464 154027464 G T DHX36 Missense_Mutation p.P264Q 0.21 deleterious(0) probably_damaging(1) TCGA-CN-A641-01 3 157160771 157160771 G A PTX3 3'UTR 0.20 TCGA-CN-A641-01 3 161214758 161214758 G T OTOL1 Nonsense_Mutation p.E55* 0.08 TCGA-CN-A641-01 3 164748525 164748525 G T SI Missense_Mutation p.T956K 0.23 tolerated(0.44) benign(0.001) TCGA-CN-A641-01 3 175189479 175189479 G A NAALADL2 Missense_Mutation p.S529N 0.23 tolerated(0.36) benign(0.015) TCGA-CN-A641-01 3 179082100 179082100 C T MFN1 Silent p.V184V 0.39 TCGA-CN-A641-01 3 179576922 179576922 G C PEX5L Silent p.R250R 0.62 TCGA-CN-A641-01 3 190986187 190986187 G C UTS2B 3'UTR 0.33 TCGA-CN-A641-01 3 3144489 3144489 G T IL5RA Missense_Mutation p.P33H 0.42 deleterious(0) probably_damaging(1) TCGA-CN-A641-01 3 48670725 48670725 A T SLC26A6 Missense_Mutation p.L94Q 0.52 deleterious(0) probably_damaging(0.988) TCGA-CN-A641-01 3 58639476 58639476 T C FAM3D Missense_Mutation p.I16V 0.48 tolerated(0.41) benign(0.002) TCGA-CN-A641-01 3 97251285 97251285 G T EPHA6 Missense_Mutation p.G762C 0.25 deleterious(0) probably_damaging(1) TCGA-CN-A641-01 3 97887871 97887871 A T OR5H15 Missense_Mutation p.T110S 0.31 deleterious(0.03) benign(0.196) TCGA-CN-A641-01 4 100870880 100870880 T A H2AFZ Silent p.G7G 0.30 TCGA-CN-A641-01 4 122681310 122681310 T C TMEM155 3'UTR 0.26 TCGA-CN-A641-01 4 123373006 123373006 T G IL2 Silent p.T121T 0.23 TCGA-CN-A641-01 4 129773388 129773388 G A JADE1 Missense_Mutation p.V221M 0.35 deleterious(0) probably_damaging(0.999) TCGA-CN-A641-01 4 134073368 134073368 C A PCDH10 Missense_Mutation p.S691R 0.36 tolerated(0.54) benign(0.023) TCGA-CN-A641-01 4 13617097 13617097 C A BOD1L1 Missense_Mutation p.R133L 0.53 probably_damaging(1) TCGA-CN-A641-01 4 41984280 41984280 G A DCAF4L1 Silent p.V157V 0.46 TCGA-CN-A641-01 4 73205406 73205406 C A ADAMTS3 Silent p.S222S 0.36 TCGA-CN-A641-01 5 11022898 11022898 G T CTNND2 Silent p.S994S 0.22 TCGA-CN-A641-01 5 132228812 132228812 T C AFF4 Splice_Site p.X770_splice 0.35 TCGA-CN-A641-01 5 139876563 139876563 A T ANKHD1 Missense_Mutation p.I902F 0.30 unknown(0) TCGA-CN-A641-01 5 140249505 140249505 G A PCDHA11 Missense_Mutation p.V273I 0.30 tolerated_low_confidence(0.84) benign(0.041) TCGA-CN-A641-01 5 148407034 148407034 C A SH3TC2 Missense_Mutation p.S754I 0.28 tolerated(0.09) benign(0.035) TCGA-CN-A641-01 5 153377430 153377430 G A FAM114A2 Missense_Mutation p.T421I 0.27 deleterious(0) probably_damaging(0.931) TCGA-CN-A641-01 5 156482413 156482413 C T HAVCR1 Missense_Mutation p.G60S 0.22 tolerated(0.3) benign(0.001) TCGA-CN-A641-01 5 160757944 160757944 T A GABRB2 Silent p.A341A 0.19 TCGA-CN-A641-01 5 161281186 161281186 G T GABRA1 Missense_Mutation p.D33Y 0.13 deleterious(0) probably_damaging(0.993) TCGA-CN-A641-01 5 161300189 161300189 A C GABRA1 Missense_Mutation p.M108L 0.42 tolerated(0.12) benign(0.007) TCGA-CN-A641-01 5 176707633 176707633 G T NSD1 Missense_Mutation p.C1897F 0.34 deleterious(0) probably_damaging(1) TCGA-CN-A641-01 5 176707784 176707786 CCG TCAT NSD1 Frame_Shift_Ins p.R1948Hfs*16 0.17 TCGA-CN-A641-01 5 23522455 23522455 G C PRDM9 Missense_Mutation p.R184P 0.26 deleterious(0) possibly_damaging(0.847) TCGA-CN-A641-01 5 24488133 24488133 G A CDH10 Missense_Mutation p.A669V 0.31 deleterious(0) probably_damaging(0.983) TCGA-CN-A641-01 5 38338867 38338867 G T EGFLAM Missense_Mutation p.R92L 0.33 tolerated_low_confidence(0.34) benign(0.001) TCGA-CN-A641-01 5 43280495 43280495 G T NIM1K Missense_Mutation p.M325I 0.28 deleterious(0.01) benign(0.089) TCGA-CN-A641-01 6 117586802 117586802 G A VGLL2 5'UTR 0.38 TCGA-CN-A641-01 6 118790383 118790383 G C CEP85L Silent p.S705S 0.40 TCGA-CN-A641-01 6 170140341 170140341 A G TCTE3 Silent p.A179A 0.33 TCGA-CN-A641-01 6 18122404 18122404 T C NHLRC1 Missense_Mutation p.H145R 0.14 deleterious(0) probably_damaging(0.999) TCGA-CN-A641-01 6 26158404 26158404 G C HIST1H2BD Missense_Mutation p.E3Q 0.06 deleterious_low_confidence(0.05) possibly_damaging(0.653) TCGA-CN-A641-01 6 28554374 28554374 G T SCAND3 Missense_Mutation p.R41S 0.12 tolerated_low_confidence(0.19) benign(0.002) TCGA-CN-A641-01 6 28554376 28554376 A T SCAND3 Missense_Mutation p.L40Q 0.13 tolerated_low_confidence(0.47) benign(0.004) TCGA-CN-A641-01 6 32337688 32337688 C A C6orf10 Missense_Mutation p.R29L 0.53 deleterious(0) benign(0.197) TCGA-CN-A641-01 6 70886424 70886424 C A COL19A1 Missense_Mutation p.P879T 0.48 tolerated(0.13) probably_damaging(0.98) TCGA-CN-A641-01 6 91260237 91260237 T C MAP3K7 Missense_Mutation p.Y300C 0.39 deleterious(0) probably_damaging(0.948) TCGA-CN-A641-01 7 123269039 123269039 G T ASB15 Missense_Mutation p.G331C 0.39 deleterious(0) probably_damaging(0.994) TCGA-CN-A641-01 7 149503054 149503054 G T SSPO RNA 0.51 TCGA-CN-A641-01 7 151167697 151167697 C T RHEB Nonsense_Mutation p.W141* 0.30 TCGA-CN-A641-01 7 20766712 20766712 G T ABCB5 Missense_Mutation p.R892M 0.16 tolerated(0.06) probably_damaging(0.997) TCGA-CN-A641-01 7 29915483 29915483 C A WIPF3 Missense_Mutation p.P43Q 0.51 tolerated_low_confidence(0.32) possibly_damaging(0.614) TCGA-CN-A641-01 7 36910057 36910057 C A ELMO1 Missense_Mutation p.V616L 0.40 tolerated(1) benign(0.002) TCGA-CN-A641-01 7 47408917 47408917 C A TNS3 Missense_Mutation p.K442N 0.25 tolerated(0.21) benign(0.347) TCGA-CN-A641-01 7 83014746 83014746 T C SEMA3E Missense_Mutation p.D580G 0.39 deleterious(0.03) benign(0.031) TCGA-CN-A641-01 7 99564745 99564745 C A AZGP1 Missense_Mutation p.G260C 0.29 deleterious(0) probably_damaging(1) TCGA-CN-A641-01 8 101245762 101245762 C G SPAG1 Silent p.L704L 0.45 TCGA-CN-A641-01 8 110451194 110451194 G A PKHD1L1 Missense_Mutation p.V1277I 0.24 tolerated(0.63) benign(0.34) TCGA-CN-A641-01 8 110980721 110980722 - A KCNV1 Frame_Shift_Ins p.A367Cfs*2 0.32 TCGA-CN-A641-01 8 113308093 113308093 G T CSMD3 Missense_Mutation p.H2861Q 0.38 deleterious(0.02) probably_damaging(0.944) TCGA-CN-A641-01 8 113402995 113402995 A G CSMD3 Silent p.T1944T 0.47 TCGA-CN-A641-01 8 114389384 114389384 G C CSMD3 Intron 0.38 TCGA-CN-A641-01 8 125551307 125551307 C A TATDN1 5'UTR 0.19 TCGA-CN-A641-01 8 139277993 139277993 T G FAM135B Missense_Mutation p.N84H 0.26 deleterious(0) benign(0.313) TCGA-CN-A641-01 8 22145047 22145047 T C PIWIL2 Silent p.N250N 0.20 TCGA-CN-A641-01 8 24249885 24249885 G - ADAMDEC1 Frame_Shift_Del p.G67Afs*14 0.16 TCGA-CN-A641-01 8 2823429 2823429 C T CSMD1 Missense_Mutation p.G3050R 0.39 probably_damaging(1) TCGA-CN-A641-01 8 30511011 30511011 C A GTF2E2 Silent p.S35S 0.16 TCGA-CN-A641-01 8 41122744 41122744 T C SFRP1 Missense_Mutation p.N296S 0.19 tolerated(0.11) benign(0.138) TCGA-CN-A641-01 8 62438567 62438567 C T ASPH Silent p.G623G 0.40 TCGA-CN-A641-01 8 68965416 68965416 C A PREX2 Missense_Mutation p.A343E 0.32 deleterious(0) probably_damaging(0.995) TCGA-CN-A641-01 8 73849153 73849153 C T KCNB2 Silent p.H521H 0.32 TCGA-CN-A641-01 8 77768272 77768272 G T ZFHX4 Missense_Mutation p.V3039F 0.31 probably_damaging(0.934) TCGA-CN-A641-01 8 79588092 79588092 A T ZC2HC1A Silent p.V29V 0.29 TCGA-CN-A641-01 9 136501760 136501760 G A DBH Missense_Mutation p.M89I 0.28 deleterious(0.03) probably_damaging(0.963) TCGA-CN-A641-01 9 139366549 139366549 G T SEC16A Silent p.L1194L 0.08 TCGA-CN-A641-01 9 140356757 140356757 C T PNPLA7 Silent p.T1173T 0.30 TCGA-CN-A641-01 9 19350802 19350802 G A DENND4C Missense_Mutation p.E1425K 0.07 tolerated(0.4) possibly_damaging(0.808) TCGA-CN-A641-01 9 19786496 19786496 G A SLC24A2 Silent p.D123D 0.34 TCGA-CN-A641-01 9 6536092 6536092 C T GLDC Missense_Mutation p.R937H 0.07 deleterious(0.01) possibly_damaging(0.839) TCGA-CN-A641-01 9 71998550 71998550 G C FAM189A2 Missense_Mutation p.V167L 0.29 tolerated(1) benign(0.002) TCGA-CN-A641-01 9 73151800 73151800 G A TRPM3 Missense_Mutation p.S1398L 0.35 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-CN-A641-01 9 84267137 84267137 T C TLE1 Missense_Mutation p.I122V 0.29 tolerated(0.16) benign(0.003) TCGA-CN-A641-01 9 990958 990958 G A DMRT3 Missense_Mutation p.E458K 0.50 deleterious_low_confidence(0) benign(0.024) TCGA-CN-A641-01 X 125298719 125298719 G T DCAF12L2 Missense_Mutation p.P397T 0.69 tolerated(0.13) benign(0.014) TCGA-CN-A641-01 X 129518776 129518776 G T GPR119 Silent p.R216R 0.51 TCGA-CN-A641-01 X 138633414 138633414 C A F9 Missense_Mutation p.F238L 0.61 tolerated(0.07) benign(0.031) TCGA-CN-A641-01 X 34149744 34149744 T G FAM47A Missense_Mutation p.T218P 0.67 deleterious(0.01) benign(0.157) TCGA-CN-A641-01 X 64137799 64137799 G T ZC4H2 Intron 0.88 TCGA-CN-A642-01 10 101731859 101731859 C T DNMBP Missense_Mutation p.R8Q 0.35 deleterious(0.02) probably_damaging(0.977) TCGA-CN-A642-01 10 7214470 7214470 G A SFMBT2 Missense_Mutation p.A713V 0.40 tolerated(0.19) benign(0.002) TCGA-CN-A642-01 11 534286 534286 C A HRAS Missense_Mutation p.G13C 0.71 deleterious(0.02) possibly_damaging(0.802) TCGA-CN-A642-01 11 64533419 64533419 A C SF1 Intron 0.36 TCGA-CN-A642-01 11 64990058 64990058 G A SLC22A20 RNA 0.31 TCGA-CN-A642-01 12 101365182 101365182 C T ANO4 Silent p.F150F 0.32 TCGA-CN-A642-01 12 45269630 45269630 C T NELL2 Missense_Mutation p.R58K 0.42 tolerated_low_confidence(0.94) benign(0) TCGA-CN-A642-01 12 54767763 54767763 G A ZNF385A Missense_Mutation p.R139C 0.31 deleterious(0.04) possibly_damaging(0.886) TCGA-CN-A642-01 12 72667102 72667102 C T TRHDE Silent p.L182L 0.41 TCGA-CN-A642-01 13 73293187 73293187 G A MZT1 Missense_Mutation p.T43I 0.41 deleterious(0.02) probably_damaging(0.967) TCGA-CN-A642-01 14 21875158 21875158 C T CHD8 Missense_Mutation p.A922T 0.56 deleterious(0) probably_damaging(0.994) TCGA-CN-A642-01 14 56233280 56233280 C T RP11-813I20.2 Intron 0.30 TCGA-CN-A642-01 14 92047218 92047218 A G CATSPERB 3'UTR 0.46 TCGA-CN-A642-01 15 68619112 68619112 C T ITGA11 Missense_Mutation p.M697I 0.27 tolerated(0.62) benign(0.001) TCGA-CN-A642-01 15 77241521 77241521 C A RCN2 Silent p.G304G 0.30 TCGA-CN-A642-01 16 3639181 3639181 C T SLX4 Silent p.R1486R 0.35 TCGA-CN-A642-01 16 56481804 56481804 C G NUDT21 Missense_Mutation p.D72H 0.37 deleterious(0.01) benign(0.062) TCGA-CN-A642-01 16 57057739 57057739 G A NLRC5 Missense_Mutation p.R133Q 0.20 tolerated(0.27) benign(0.023) TCGA-CN-A642-01 16 57095443 57095443 C - NLRC5 Frame_Shift_Del p.T1357Sfs*2 0.34 TCGA-CN-A642-01 16 57111290 57111293 GAGT - NLRC5 Splice_Site p.X1640_splice 0.51 TCGA-CN-A642-01 16 599054 599054 C T CAPN15 Missense_Mutation p.A504V 0.29 tolerated(0.5) benign(0.002) TCGA-CN-A642-01 16 69746949 69746949 G A NQO1 Silent p.V167V 0.34 TCGA-CN-A642-01 17 1083041 1083041 C G ABR 5'UTR 0.54 TCGA-CN-A642-01 17 12916587 12916587 G A ELAC2 Missense_Mutation p.R166W 0.35 deleterious(0) probably_damaging(0.997) TCGA-CN-A642-01 17 16723975 16723975 T C AC022596.6 RNA 0.13 TCGA-CN-A642-01 17 36865454 36865454 G A MLLT6 Missense_Mutation p.R128Q 0.27 deleterious(0.01) unknown(0) TCGA-CN-A642-01 17 39521784 39521784 G A KRT33B Nonsense_Mutation p.Q204* 0.39 TCGA-CN-A642-01 17 39919477 39919477 T G JUP Missense_Mutation p.T419P 0.43 deleterious(0) probably_damaging(1) TCGA-CN-A642-01 18 65179895 65179895 C A DSEL Missense_Mutation p.A661S 0.40 tolerated(0.25) probably_damaging(0.962) TCGA-CN-A642-01 19 19261525 19261525 T C MEF2B Missense_Mutation p.Q7R 0.31 deleterious(0) possibly_damaging(0.479) TCGA-CN-A642-01 19 31770258 31770258 G A TSHZ3 Silent p.N147N 0.08 TCGA-CN-A642-01 19 44611165 44611165 G A ZNF224 Silent p.G284G 0.32 TCGA-CN-A642-01 19 50138866 50138866 C G RRAS Missense_Mutation p.K208N 0.44 tolerated(0.06) benign(0) TCGA-CN-A642-01 19 58967400 58967400 C T ZNF324B Silent p.H363H 0.34 TCGA-CN-A642-01 19 8046013 8046013 G A ELAVL1 Missense_Mutation p.A77V 0.29 deleterious(0) possibly_damaging(0.851) TCGA-CN-A642-01 1 150919402 150919402 G A SETDB1 Missense_Mutation p.R394Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-CN-A642-01 1 15844869 15844869 G A CASP9 Missense_Mutation p.R52W 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-CN-A642-01 1 160340795 160340795 A T NHLH1 Missense_Mutation p.N92Y 0.35 deleterious(0) probably_damaging(0.973) TCGA-CN-A642-01 1 208252709 208252709 C T PLXNA2 Missense_Mutation p.G828S 0.54 tolerated(1) benign(0.271) TCGA-CN-A642-01 1 247171299 247171299 G A ZNF695 5'UTR 0.36 TCGA-CN-A642-01 1 29651716 29651716 C T PTPRU Missense_Mutation p.R1386C 0.29 deleterious(0) probably_damaging(1) TCGA-CN-A642-01 1 34042979 34042979 C T CSMD2 Missense_Mutation p.R2500H 0.40 deleterious(0.03) probably_damaging(0.954) TCGA-CN-A642-01 1 48764386 48764386 C T SPATA6 Silent p.%3D 0.40 TCGA-CN-A642-01 1 93680488 93680488 G C CCDC18 Missense_Mutation p.E615Q 0.62 deleterious(0.01) probably_damaging(0.987) TCGA-CN-A642-01 20 30659561 30659561 G A HCK Silent p.P53P 0.39 TCGA-CN-A642-01 20 33875503 33875503 G A FAM83C Missense_Mutation p.S360F 0.41 deleterious(0) possibly_damaging(0.868) TCGA-CN-A642-01 20 35827605 35827605 C T RPN2 Silent p.L152L 0.34 TCGA-CN-A642-01 20 41385106 41385106 C T PTPRT Silent p.V285V 0.29 TCGA-CN-A642-01 21 43161651 43161651 T A RIPK4 Nonsense_Mutation p.K568* 0.38 TCGA-CN-A642-01 21 46320369 46320369 C T ITGB2 Missense_Mutation p.V255I 0.23 deleterious(0) benign(0.315) TCGA-CN-A642-01 21 47546022 47546022 G A COL6A2 Missense_Mutation p.E765K 0.36 tolerated(0.81) benign(0.047) TCGA-CN-A642-01 22 41556727 41556727 G A EP300 Splice_Site p.X1224_splice 0.80 TCGA-CN-A642-01 22 50217877 50217877 G A BRD1 Missense_Mutation p.T30M 0.75 tolerated(0.06) probably_damaging(0.945) TCGA-CN-A642-01 22 50528923 50528923 C T MOV10L1 Intron 0.47 TCGA-CN-A642-01 2 202131411 202131411 C T CASP8 Nonsense_Mutation p.R127* 0.38 TCGA-CN-A642-01 2 215645897 215645897 T A BARD1 Missense_Mutation p.E234V 0.33 tolerated(0.09) benign(0.339) TCGA-CN-A642-01 2 216964799 216964799 C T TMEM169 Missense_Mutation p.T143M 0.34 tolerated(0.11) benign(0.005) TCGA-CN-A642-01 2 70933502 70933502 C T ADD2 Silent p.P13P 0.37 TCGA-CN-A642-01 3 13546139 13546139 G A HDAC11 Missense_Mutation p.A334T 0.28 tolerated_low_confidence(0.09) benign(0.003) TCGA-CN-A642-01 3 183491577 183491577 A G YEATS2 Missense_Mutation p.N788S 0.42 tolerated_low_confidence(0.57) benign(0.004) TCGA-CN-A642-01 3 184090590 184090590 C T THPO Missense_Mutation p.R258H 0.36 tolerated_low_confidence(1) benign(0) TCGA-CN-A642-01 3 51749371 51749372 TA - GRM2 Frame_Shift_Del p.Y528* 0.24 TCGA-CN-A642-01 4 103853300 103853300 C G SLC9B1 Missense_Mutation p.L270F 0.38 deleterious(0.02) benign(0.208) TCGA-CN-A642-01 4 106156608 106156608 G A TET2 Silent p.E503E 0.26 TCGA-CN-A642-01 4 2934445 2934445 C T MFSD10 Missense_Mutation p.R138Q 0.35 tolerated(0.19) benign(0.254) TCGA-CN-A642-01 4 53464859 53464859 C G USP46 Missense_Mutation p.G312R 0.30 deleterious(0) probably_damaging(0.987) TCGA-CN-A642-01 4 55146617 55146617 G A PDGFRA Missense_Mutation p.R764H 0.44 tolerated(0.08) benign(0.036) TCGA-CN-A642-01 5 135392430 135392430 C T TGFBI Missense_Mutation p.P542S 0.67 deleterious(0) probably_damaging(1) TCGA-CN-A642-01 5 140481656 140481656 G A PCDHB3 Missense_Mutation p.A475T 0.68 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-CN-A642-01 5 140807465 140807465 C T PCDHGB6 Intron 0.38 TCGA-CN-A642-01 5 74892176 74892176 A G POLK Missense_Mutation p.D553G 0.43 tolerated(0.1) benign(0.005) TCGA-CN-A642-01 5 96124350 96124350 C T ERAP1 Missense_Mutation p.M521I 0.71 deleterious(0) possibly_damaging(0.828) TCGA-CN-A642-01 6 27858231 27858231 G C HIST1H3J Missense_Mutation p.H114D 0.33 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-CN-A642-01 6 30131821 30131821 C T TRIM15 Silent p.D120D 0.47 TCGA-CN-A642-01 6 31323247 31323247 G A HLA-B Nonsense_Mutation p.Q248* 0.29 TCGA-CN-A642-01 6 33144527 33144527 C T COL11A2 Missense_Mutation p.E610K 0.39 possibly_damaging(0.486) TCGA-CN-A642-01 6 39866669 39866669 A G DAAM2 Missense_Mutation p.K879E 0.38 tolerated(0.07) probably_damaging(0.991) TCGA-CN-A642-01 6 74227627 74227627 G A EEF1A1 Missense_Mutation p.T432I 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-CN-A642-01 6 74227628 74227628 T A EEF1A1 Missense_Mutation p.T432S 0.40 deleterious_low_confidence(0) benign(0.007) TCGA-CN-A642-01 7 150938616 150938616 C A SMARCD3 Missense_Mutation p.D301Y 0.47 deleterious(0) probably_damaging(0.981) TCGA-CN-A642-01 7 29105701 29105701 C A CPVL Missense_Mutation p.D301Y 0.25 tolerated(0.27) possibly_damaging(0.744) TCGA-CN-A642-01 7 90419964 90419964 G A CDK14 Missense_Mutation p.E163K 0.35 deleterious(0) probably_damaging(0.996) TCGA-CN-A642-01 8 11842021 11842021 A G DEFB135 Silent p.E52E 0.35 TCGA-CN-A642-01 8 125565869 125565869 C G MTSS1 Missense_Mutation p.K544N 0.64 deleterious(0) probably_damaging(0.996) TCGA-CN-A642-01 8 144944662 144944662 G A EPPK1 Silent p.D920D 0.64 TCGA-CN-A642-01 8 145661384 145661384 G A TONSL Missense_Mutation p.P811L 0.71 tolerated(0.72) benign(0.001) TCGA-CN-A642-01 8 23069663 23069663 C T TNFRSF10A Nonsense_Mutation p.W123* 0.25 TCGA-CN-A642-01 8 27729430 27729430 G A SCARA5 3'UTR 0.31 TCGA-CN-A642-01 8 52412318 52412318 G C PXDNL Missense_Mutation p.F131L 0.23 tolerated(0.05) possibly_damaging(0.627) TCGA-CN-A642-01 8 54897066 54897066 C G TCEA1 Missense_Mutation p.E179Q 0.19 deleterious(0.02) possibly_damaging(0.821) TCGA-CN-A642-01 8 87242274 87242274 C A SLC7A13 Missense_Mutation p.G78V 0.21 deleterious(0.02) possibly_damaging(0.831) TCGA-CN-A642-01 9 19087116 19087116 C G HAUS6 Missense_Mutation p.C208S 0.20 tolerated(0.33) possibly_damaging(0.809) TCGA-CN-A642-01 9 4604233 4604233 T A SPATA6L Nonsense_Mutation p.R318* 0.29 TCGA-CN-A642-01 9 70489923 70489923 C T CBWD5 Missense_Mutation p.G49E 0.32 deleterious(0.02) possibly_damaging(0.659) TCGA-CN-A642-01 X 107920732 107920732 C T COL4A5 Silent p.L1271L 0.69 TCGA-CN-A642-01 X 53563110 53563110 C T HUWE1 Missense_Mutation p.E4177K 0.68 unknown(0) TCGA-CN-A642-01 X 71427611 71427611 T C ERCC6L Missense_Mutation p.K336E 0.72 tolerated(0.06) benign(0.411) TCGA-CN-A6UY-01 10 73326535 73326535 G A CDH23 Missense_Mutation p.A156T 0.53 deleterious(0) probably_damaging(0.999) TCGA-CN-A6UY-01 10 98092349 98092349 C T DNTT Missense_Mutation p.S452F 0.39 deleterious(0) probably_damaging(1) TCGA-CN-A6UY-01 11 4936212 4936212 G A OR51G2 Missense_Mutation p.R228C 0.47 deleterious(0.02) benign(0.013) TCGA-CN-A6UY-01 12 118636903 118636903 C T TAOK3 Missense_Mutation p.D383N 0.45 tolerated(0.29) benign(0.004) TCGA-CN-A6UY-01 12 57995537 57995537 G A PIP4K2C 3'UTR 0.38 TCGA-CN-A6UY-01 14 50472372 50472372 C T C14orf182 Missense_Mutation p.R49Q 0.43 tolerated_low_confidence(0.6) benign(0) TCGA-CN-A6UY-01 14 51239789 51239789 G C NIN Missense_Mutation p.L231V 0.45 deleterious(0.03) probably_damaging(0.998) TCGA-CN-A6UY-01 15 23006138 23006138 G T NIPA2 3'UTR 0.92 TCGA-CN-A6UY-01 16 50818322 50818323 - A CYLD Frame_Shift_Ins p.E638Rfs*9 0.36 TCGA-CN-A6UY-01 16 67682147 67682147 G A RLTPR Missense_Mutation p.A422T 1.00 tolerated(0.23) benign(0.001) TCGA-CN-A6UY-01 17 18039775 18039775 C T MYO15A Silent p.S1547S 0.43 TCGA-CN-A6UY-01 17 40481604 40481604 T C STAT3 Missense_Mutation p.N401D 0.49 deleterious(0.01) probably_damaging(0.949) TCGA-CN-A6UY-01 17 63554045 63554045 C G AXIN2 Missense_Mutation p.E232Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-CN-A6UY-01 19 23159455 23159455 G C ZNF728 Missense_Mutation p.C228W 0.31 deleterious(0) benign(0.435) TCGA-CN-A6UY-01 19 5265138 5265138 C T PTPRS Missense_Mutation p.R150Q 0.44 deleterious(0.01) benign(0.093) TCGA-CN-A6UY-01 1 115323142 115323142 C T SIKE1 Silent p.L29L 0.54 TCGA-CN-A6UY-01 1 12979758 12979758 G A PRAMEF7 Missense_Mutation p.S317N 0.13 benign(0.035) TCGA-CN-A6UY-01 1 16725272 16725272 A T SPATA21 Silent p.A466A 0.35 TCGA-CN-A6UY-01 1 21605732 21605732 C A ECE1 Missense_Mutation p.A78S 0.40 tolerated(0.39) benign(0.075) TCGA-CN-A6UY-01 1 235945231 235945231 G T LYST Missense_Mutation p.F1673L 0.49 deleterious(0) benign(0.156) TCGA-CN-A6UY-01 1 248637363 248637363 G A OR2T3 Missense_Mutation p.G238S 0.40 tolerated(0.09) possibly_damaging(0.451) TCGA-CN-A6UY-01 1 71478083 71478083 A T PTGER3 Missense_Mutation p.F328I 0.44 tolerated(0.24) possibly_damaging(0.838) TCGA-CN-A6UY-01 1 76262786 76262786 C T MSH4 Missense_Mutation p.P39L 0.38 tolerated_low_confidence(0.16) benign(0.006) TCGA-CN-A6UY-01 20 37357219 37357219 G A SLC32A1 Silent p.V505V 0.08 TCGA-CN-A6UY-01 2 165551421 165551421 G T COBLL1 Silent p.P865P 0.43 TCGA-CN-A6UY-01 2 179432589 179432589 G C TTN Missense_Mutation p.D26090E 0.44 TCGA-CN-A6UY-01 2 27352652 27352652 C T ABHD1 Silent p.A216A 0.38 TCGA-CN-A6UY-01 2 74128448 74128448 G A ACTG2 Missense_Mutation p.E4K 0.29 tolerated_low_confidence(0.07) benign(0.405) TCGA-CN-A6UY-01 3 112989706 112989706 C G BOC Missense_Mutation p.D194E 0.39 deleterious(0.01) probably_damaging(1) TCGA-CN-A6UY-01 3 121435642 121435642 A T GOLGB1 Silent p.L410L 0.38 TCGA-CN-A6UY-01 3 149039228 149039228 G A TM4SF18 3'UTR 0.29 TCGA-CN-A6UY-01 3 49167739 49167739 G A LAMB2 Missense_Mutation p.R384C 0.62 deleterious(0) possibly_damaging(0.832) TCGA-CN-A6UY-01 4 115891640 115891640 G A NDST4 Silent p.F389F 0.38 TCGA-CN-A6UY-01 4 165961778 165961778 C T TRIM60 Missense_Mutation p.S185F 0.40 tolerated(0.29) benign(0.048) TCGA-CN-A6UY-01 4 185012391 185012391 G A ENPP6 Missense_Mutation p.A421V 0.26 tolerated(0.05) benign(0.004) TCGA-CN-A6UY-01 5 108290547 108290547 C G FER Missense_Mutation p.R483G 0.26 deleterious(0) probably_damaging(1) TCGA-CN-A6UY-01 5 149213163 149213163 G T PPARGC1B Silent p.L509L 0.20 TCGA-CN-A6UY-01 5 24537631 24537631 G A CDH10 Silent p.R128R 0.61 TCGA-CN-A6UY-01 6 102134192 102134192 G A GRIK2 Silent p.P305P 0.24 TCGA-CN-A6UY-01 6 154763341 154763341 A T CNKSR3 Missense_Mutation p.S100R 0.36 tolerated(0.11) possibly_damaging(0.614) TCGA-CN-A6UY-01 6 26235172 26235172 T C HIST1H1D 5'UTR 0.41 TCGA-CN-A6UY-01 6 33284458 33284458 G A ZBTB22 Missense_Mutation p.S79F 0.35 deleterious(0) probably_damaging(0.998) TCGA-CN-A6UY-01 6 69349299 69349299 G A BAI3 Silent p.R244R 0.24 TCGA-CN-A6UY-01 7 128452143 128452143 A G CCDC136 Missense_Mutation p.Y773C 0.35 tolerated(0.25) benign(0.002) TCGA-CN-A6UY-01 7 38505847 38505847 G A AMPH Nonsense_Mutation p.R198* 0.35 TCGA-CN-A6UY-01 8 105456579 105456579 C T DPYS Silent p.T230T 0.40 TCGA-CN-A6UY-01 9 139925703 139925703 G A FUT7 Missense_Mutation p.S163L 0.47 tolerated(0.28) benign(0.007) TCGA-CN-A6UY-01 9 2718573 2718573 G A KCNV2 Silent p.A278A 0.62 TCGA-CN-A6UY-01 X 141291581 141291581 C A MAGEC2 Missense_Mutation p.G65C 0.68 tolerated(0.08) probably_damaging(0.995) TCGA-CN-A6UY-01 X 88008757 88008757 A C CPXCR1 Silent p.S114S 0.89 TCGA-CN-A6V1-01 10 101969423 101969423 C T CHUK Missense_Mutation p.E353K 0.05 deleterious(0) possibly_damaging(0.606) TCGA-CN-A6V1-01 10 103542342 103542342 C T NPM3 Missense_Mutation p.E73K 0.08 tolerated(0.19) possibly_damaging(0.752) TCGA-CN-A6V1-01 10 116595331 116595331 C T FAM160B1 Silent p.F110F 0.06 TCGA-CN-A6V1-01 10 134896174 134896174 G A GPR123-AS1 3'Flank 0.13 TCGA-CN-A6V1-01 10 27459503 27459503 G A MASTL Missense_Mutation p.D539N 0.05 tolerated(0.12) probably_damaging(0.987) TCGA-CN-A6V1-01 10 3154456 3154456 G C PFKP Missense_Mutation p.D378H 0.06 deleterious(0.03) benign(0.003) TCGA-CN-A6V1-01 10 3180435 3180435 C T PITRM1 Silent p.V1005V 0.07 TCGA-CN-A6V1-01 10 32128591 32128591 G A ARHGAP12 Missense_Mutation p.P449S 0.08 tolerated(0.3) benign(0.031) TCGA-CN-A6V1-01 10 62648292 62648292 G A RHOBTB1 Silent p.F378F 0.05 TCGA-CN-A6V1-01 10 73511608 73511608 C G C10orf54 Missense_Mutation p.G239R 0.12 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V1-01 10 74914175 74914175 G A ECD Nonsense_Mutation p.R208* 0.07 TCGA-CN-A6V1-01 10 76994481 76994481 C T COMTD1 Missense_Mutation p.E175K 0.26 deleterious(0.04) benign(0.039) TCGA-CN-A6V1-01 10 96447916 96447916 G C CYP2C18 Missense_Mutation p.E122D 0.11 tolerated(0.27) benign(0.01) TCGA-CN-A6V1-01 11 102564686 102564686 C T MMP27 Missense_Mutation p.D382N 0.08 tolerated(0.27) benign(0.058) TCGA-CN-A6V1-01 11 102592156 102592156 C T MMP8 Missense_Mutation p.E200K 0.05 deleterious(0.01) probably_damaging(1) TCGA-CN-A6V1-01 11 10327878 10327878 G A ADM Splice_Site p.X83_splice 0.14 TCGA-CN-A6V1-01 11 108235920 108235920 G A ATM Missense_Mutation p.D2988N 0.07 tolerated(0.13) benign(0.022) TCGA-CN-A6V1-01 11 111637141 111637141 C G PPP2R1B 5'Flank 0.21 TCGA-CN-A6V1-01 11 111887438 111887438 C G DIXDC1 Missense_Mutation p.P593A 0.09 tolerated(0.16) probably_damaging(0.999) TCGA-CN-A6V1-01 11 112065459 112065459 G T BCO2 Silent p.G239G 0.05 TCGA-CN-A6V1-01 11 116692523 116692523 G A APOA4 Missense_Mutation p.A84V 0.07 deleterious(0.04) benign(0.328) TCGA-CN-A6V1-01 11 118344632 118344632 G C KMT2A Missense_Mutation p.D920H 0.06 possibly_damaging(0.621) TCGA-CN-A6V1-01 11 118516501 118516501 G A PHLDB1 Silent p.L1155L 0.06 TCGA-CN-A6V1-01 11 17139073 17139073 C G PIK3C2A Missense_Mutation p.E1061Q 0.05 tolerated(0.45) probably_damaging(0.999) TCGA-CN-A6V1-01 11 18731033 18731033 C G IGSF22 Missense_Mutation p.E967Q 0.05 tolerated(0.07) probably_damaging(1) TCGA-CN-A6V1-01 11 35456291 35456291 C G PAMR1 Missense_Mutation p.Q482H 0.08 tolerated(0.5) probably_damaging(0.976) TCGA-CN-A6V1-01 11 46568686 46568686 C T AMBRA1 Missense_Mutation p.E119K 0.05 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-CN-A6V1-01 11 50003584 50003584 G A OR4C12 Missense_Mutation p.L152F 0.04 deleterious_low_confidence(0.02) benign(0.086) TCGA-CN-A6V1-01 11 55433207 55433207 G A OR4C6 Missense_Mutation p.D189N 0.14 tolerated_low_confidence(0.07) benign(0.341) TCGA-CN-A6V1-01 11 55890051 55890051 C T OR8H3 Missense_Mutation p.S68L 0.04 deleterious(0) probably_damaging(0.931) TCGA-CN-A6V1-01 11 59190019 59190019 G A OR5A2 Silent p.L136L 0.08 TCGA-CN-A6V1-01 11 61502369 61502369 C T DAGLA Silent p.I341I 0.10 TCGA-CN-A6V1-01 11 64602837 64602837 C T CDC42BPG Silent p.L645L 0.06 TCGA-CN-A6V1-01 11 64602888 64602888 C G CDC42BPG Silent p.P628P 0.08 TCGA-CN-A6V1-01 11 6977082 6977082 G C ZNF215 Missense_Mutation p.E292Q 0.06 tolerated(0.16) benign(0.026) TCGA-CN-A6V1-01 11 7022032 7022032 C T ZNF214 Silent p.Q294Q 0.07 TCGA-CN-A6V1-01 11 73071382 73071382 G A ARHGEF17 Silent p.L1408L 0.08 TCGA-CN-A6V1-01 12 104069774 104069774 T A STAB2 Missense_Mutation p.L874Q 0.06 deleterious(0.05) benign(0.149) TCGA-CN-A6V1-01 12 108589738 108589738 C T WSCD2 Silent p.P43P 0.05 TCGA-CN-A6V1-01 12 109834318 109834318 G A MYO1H Silent p.V124V 0.07 TCGA-CN-A6V1-01 12 112110555 112110555 C T BRAP Missense_Mutation p.M219I 0.05 tolerated(0.17) benign(0.059) TCGA-CN-A6V1-01 12 123069497 123069497 C T KNTC1 Missense_Mutation p.S1165F 0.07 tolerated(0.31) benign(0.332) TCGA-CN-A6V1-01 12 124257476 124257476 C T DNAH10 Silent p.L103L 0.07 TCGA-CN-A6V1-01 12 22068703 22068703 G A ABCC9 Missense_Mutation p.H239Y 0.07 tolerated(0.56) benign(0.028) TCGA-CN-A6V1-01 12 4479668 4479668 C T FGF23 Missense_Mutation p.M199I 0.09 tolerated(0.68) benign(0.002) TCGA-CN-A6V1-01 12 48535527 48535527 C T PFKM Silent p.L544L 0.06 TCGA-CN-A6V1-01 12 49498291 49498291 G A LMBR1L Silent p.I125I 0.06 TCGA-CN-A6V1-01 12 51116998 51116998 C T DIP2B Silent p.I1060I 0.11 TCGA-CN-A6V1-01 12 51203320 51203320 C T ATF1 Silent p.V92V 0.08 TCGA-CN-A6V1-01 12 51402270 51402270 G C SLC11A2 Missense_Mutation p.P87A 0.08 deleterious(0.02) possibly_damaging(0.767) TCGA-CN-A6V1-01 12 51467818 51467818 G A CSRNP2 Missense_Mutation p.R67C 0.09 deleterious(0.02) probably_damaging(0.985) TCGA-CN-A6V1-01 12 53346617 53346617 G C KRT18 Silent p.L428L 0.09 TCGA-CN-A6V1-01 12 54678090 54678090 G C HNRNPA1 Missense_Mutation p.R371T 0.06 deleterious_low_confidence(0) unknown(0) TCGA-CN-A6V1-01 12 56619246 56619246 G A NABP2 Missense_Mutation p.D57N 0.06 deleterious(0) possibly_damaging(0.805) TCGA-CN-A6V1-01 12 56865935 56865935 G A GLS2 Missense_Mutation p.S519L 0.15 deleterious(0.02) benign(0.33) TCGA-CN-A6V1-01 12 58114262 58114262 G T OS9 Missense_Mutation p.E613D 0.10 deleterious(0) probably_damaging(0.998) TCGA-CN-A6V1-01 12 58160754 58160754 G C CYP27B1 Missense_Mutation p.S24C 0.06 deleterious(0.01) benign(0.237) TCGA-CN-A6V1-01 12 58160810 58160810 G C CYP27B1 Silent p.L5L 0.04 TCGA-CN-A6V1-01 12 6646520 6646520 C T GAPDH Silent p.V163V 0.08 TCGA-CN-A6V1-01 12 6647075 6647075 C G GAPDH Missense_Mutation p.S284C 0.08 tolerated_low_confidence(1) probably_damaging(0.929) TCGA-CN-A6V1-01 12 66773095 66773095 C G GRIP1 Silent p.L810L 0.03 TCGA-CN-A6V1-01 12 7045484 7045484 C T ATN1 Silent p.L352L 0.08 TCGA-CN-A6V1-01 12 70983815 70983815 C A PTPRB Missense_Mutation p.R660I 0.06 deleterious(0) probably_damaging(0.956) TCGA-CN-A6V1-01 12 72057343 72057343 C T ZFC3H1 Silent p.P16P 0.06 TCGA-CN-A6V1-01 12 7344263 7344263 G A PEX5 Missense_Mutation p.D154N 0.10 tolerated(0.09) probably_damaging(1) TCGA-CN-A6V1-01 13 26127956 26127956 C T ATP8A2 Silent p.Y361Y 0.05 TCGA-CN-A6V1-01 13 36384994 36384994 G C DCLK1 Missense_Mutation p.P556A 0.06 deleterious(0) possibly_damaging(0.728) TCGA-CN-A6V1-01 13 36700207 36700207 C T DCLK1 Missense_Mutation p.R23Q 0.07 tolerated(0.05) unknown(0) TCGA-CN-A6V1-01 13 41515396 41515396 G A ELF1 Missense_Mutation p.S306F 0.04 deleterious(0) possibly_damaging(0.602) TCGA-CN-A6V1-01 13 92380913 92380913 G A GPC5 Missense_Mutation p.R383K 0.08 tolerated(0.16) benign(0.122) TCGA-CN-A6V1-01 13 96675963 96675963 G C UGGT2 Missense_Mutation p.L98V 0.05 deleterious(0.04) probably_damaging(0.997) TCGA-CN-A6V1-01 14 102606224 102606224 C T WDR20 5'Flank 0.07 TCGA-CN-A6V1-01 14 20612771 20612771 G A OR4N5 Missense_Mutation p.E293K 0.06 deleterious(0) possibly_damaging(0.606) TCGA-CN-A6V1-01 14 64691258 64691258 G A SYNE2 Missense_Mutation p.R6821Q 0.10 benign(0.003) TCGA-CN-A6V1-01 14 73437692 73437692 G A ZFYVE1 Silent p.F744F 0.10 TCGA-CN-A6V1-01 14 75323591 75323591 G A PROX2 Silent p.V280V 0.05 TCGA-CN-A6V1-01 14 75513215 75513215 G A MLH3 Silent p.F1048F 0.08 TCGA-CN-A6V1-01 14 78028818 78028818 C G SPTLC2 Silent p.L257L 0.08 TCGA-CN-A6V1-01 14 94780855 94780855 A G SERPINA6 Missense_Mutation p.V44A 0.14 tolerated(0.67) benign(0.092) TCGA-CN-A6V1-01 14 95058471 95058471 C T SERPINA5 Silent p.F372F 0.05 TCGA-CN-A6V1-01 15 27184489 27184489 G A GABRA5 Intron 0.07 TCGA-CN-A6V1-01 15 33261005 33261005 G A FMN1 Missense_Mutation p.S743F 0.05 deleterious(0.02) possibly_damaging(0.895) TCGA-CN-A6V1-01 15 42113896 42113896 G A MAPKBP1 Missense_Mutation p.E951K 0.08 tolerated(0.08) benign(0.348) TCGA-CN-A6V1-01 15 43815760 43815760 G A MAP1A Missense_Mutation p.E697K 0.11 possibly_damaging(0.533) TCGA-CN-A6V1-01 15 44181013 44181013 C G FRMD5 Missense_Mutation p.Q262H 0.14 tolerated(0.08) benign(0.126) TCGA-CN-A6V1-01 15 49320677 49320677 C T SECISBP2L Silent p.L289L 0.06 TCGA-CN-A6V1-01 15 50888513 50888513 G A TRPM7 Nonsense_Mutation p.Q1077* 0.06 TCGA-CN-A6V1-01 15 51350317 51350317 C G TNFAIP8L3 Missense_Mutation p.E214Q 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-CN-A6V1-01 15 51791702 51791702 G C DMXL2 Missense_Mutation p.S1240C 0.06 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V1-01 15 59910422 59910422 C T GCNT3 5'UTR 0.08 TCGA-CN-A6V1-01 15 67477138 67477138 C G SMAD3 Silent p.V315V 0.07 TCGA-CN-A6V1-01 15 75498768 75498768 C G C15orf39 Missense_Mutation p.L127V 0.09 deleterious(0) possibly_damaging(0.567) TCGA-CN-A6V1-01 15 89843085 89843085 G A FANCI Silent p.K897K 0.10 TCGA-CN-A6V1-01 15 89843089 89843089 G A FANCI Missense_Mutation p.E899K 0.10 tolerated(0.18) benign(0.089) TCGA-CN-A6V1-01 15 89844556 89844556 G A FANCI Splice_Site p.X964_splice 0.07 TCGA-CN-A6V1-01 15 91478818 91478818 C G UNC45A Missense_Mutation p.F32L 0.07 deleterious(0) probably_damaging(0.95) TCGA-CN-A6V1-01 15 92647588 92647588 C T SLCO3A1 Silent p.L275L 0.04 TCGA-CN-A6V1-01 16 21147730 21147730 C T DNAH3 Silent p.L267L 0.04 TCGA-CN-A6V1-01 16 21208778 21208778 G C ZP2 3'UTR 0.08 TCGA-CN-A6V1-01 16 4937178 4937178 C G PPL Missense_Mutation p.Q855H 0.06 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V1-01 16 55359008 55359008 C G IRX6 Missense_Mutation p.S2C 0.09 deleterious(0) possibly_damaging(0.907) TCGA-CN-A6V1-01 16 57786825 57786825 C T KATNB1 Silent p.I280I 0.12 TCGA-CN-A6V1-01 16 66951592 66951592 C T CDH16 Missense_Mutation p.E28K 0.15 deleterious(0.04) possibly_damaging(0.484) TCGA-CN-A6V1-01 16 68909060 68909060 G A TANGO6 Missense_Mutation p.G333E 0.09 tolerated(0.06) probably_damaging(0.996) TCGA-CN-A6V1-01 17 10428364 10428364 C T MYH2 Missense_Mutation p.E1561K 0.07 deleterious(0.03) probably_damaging(0.936) TCGA-CN-A6V1-01 17 31082662 31082662 G C MYO1D Missense_Mutation p.Q439E 0.08 tolerated(0.14) benign(0.188) TCGA-CN-A6V1-01 17 3346491 3346491 G C SPATA22 Missense_Mutation p.L293V 0.10 tolerated(0.23) benign(0.125) TCGA-CN-A6V1-01 17 36486420 36486420 C T GPR179 Missense_Mutation p.G1011D 0.11 tolerated(0.06) benign(0.022) TCGA-CN-A6V1-01 17 38573102 38573102 C G TOP2A Missense_Mutation p.D23H 0.06 tolerated(0.08) possibly_damaging(0.519) TCGA-CN-A6V1-01 17 38788614 38788614 C G SMARCE1 Missense_Mutation p.D183H 0.07 deleterious(0) probably_damaging(0.953) TCGA-CN-A6V1-01 17 40010360 40010360 C T KLHL11 Missense_Mutation p.E587K 0.05 deleterious(0.05) benign(0.155) TCGA-CN-A6V1-01 17 41249303 41249303 G C BRCA1 Missense_Mutation p.S184C 0.04 deleterious(0) probably_damaging(0.964) TCGA-CN-A6V1-01 17 42987491 42987491 G A GFAP 3'Flank 0.07 TCGA-CN-A6V1-01 17 42987581 42987581 G C GFAP 3'Flank 0.05 TCGA-CN-A6V1-01 17 46607143 46607143 G A HOXB1 Silent p.F224F 0.05 TCGA-CN-A6V1-01 17 55339539 55339539 C T MSI2 Nonsense_Mutation p.R100* 0.07 TCGA-CN-A6V1-01 17 56492888 56492888 C T RNF43 Silent p.L17L 0.12 TCGA-CN-A6V1-01 17 61767679 61767679 C T MAP3K3 Silent p.F404F 0.09 TCGA-CN-A6V1-01 17 644738 644738 C T FAM57A Silent p.I234I 0.06 TCGA-CN-A6V1-01 17 72842377 72842377 G A GRIN2C Silent p.F726F 0.06 TCGA-CN-A6V1-01 17 73106605 73106605 C A ARMC7 Missense_Mutation p.P47T 0.06 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 17 7663189 7663189 C T DNAH2 Silent p.V906V 0.05 TCGA-CN-A6V1-01 17 78363062 78363062 C G RNF213 Silent p.V5030V 0.06 TCGA-CN-A6V1-01 17 78447056 78447056 C G NPTX1 Missense_Mutation p.E281Q 0.06 deleterious(0) probably_damaging(0.982) TCGA-CN-A6V1-01 17 79674211 79674211 G A SLC25A10 Missense_Mutation p.E180K 0.06 deleterious(0) benign(0.014) TCGA-CN-A6V1-01 17 8193340 8193340 C T RANGRF 3'UTR 0.06 TCGA-CN-A6V1-01 18 3879988 3879988 G A DLGAP1 Silent p.S27S 0.12 TCGA-CN-A6V1-01 18 43467785 43467785 G A EPG5 Silent p.V1680V 0.07 TCGA-CN-A6V1-01 18 44015328 44015328 C G RNF165 Missense_Mutation p.Q152E 0.06 deleterious(0.02) benign(0.118) TCGA-CN-A6V1-01 18 45368239 45368239 G A SMAD2 Nonsense_Mutation p.Q455* 0.10 TCGA-CN-A6V1-01 18 48591940 48591940 C G SMAD4 Missense_Mutation p.S368C 0.05 deleterious(0.02) possibly_damaging(0.77) TCGA-CN-A6V1-01 18 51887043 51887043 C T C18orf54 Missense_Mutation p.S34F 0.07 deleterious(0) possibly_damaging(0.899) TCGA-CN-A6V1-01 18 74631794 74631794 G A ZNF236 Missense_Mutation p.E1111K 0.06 tolerated(0.54) benign(0.418) TCGA-CN-A6V1-01 18 74963085 74963085 C T GALR1 Missense_Mutation p.P194L 0.04 tolerated(0.38) benign(0.003) TCGA-CN-A6V1-01 18 77895633 77895633 C T ADNP2 Silent p.F779F 0.07 TCGA-CN-A6V1-01 18 9254483 9254483 C T ANKRD12 Silent p.F406F 0.06 TCGA-CN-A6V1-01 19 10257139 10257139 C G DNMT1 Missense_Mutation p.E928Q 0.05 deleterious(0.01) benign(0.138) TCGA-CN-A6V1-01 19 12874125 12874125 G A HOOK2 Silent p.L711L 0.08 TCGA-CN-A6V1-01 19 17057938 17057938 C G CPAMD8 Missense_Mutation p.E917Q 0.04 tolerated(0.5) benign(0.064) TCGA-CN-A6V1-01 19 21719223 21719223 G A ZNF429 Missense_Mutation p.C123Y 0.08 tolerated(0.12) benign(0.023) TCGA-CN-A6V1-01 19 33792385 33792385 C T CEBPA Silent p.Q312Q 0.06 TCGA-CN-A6V1-01 19 34929559 34929559 G A UBA2 Missense_Mutation p.E157K 0.07 deleterious(0.04) possibly_damaging(0.817) TCGA-CN-A6V1-01 19 37117312 37117312 C G ZNF382 Silent p.L171L 0.05 TCGA-CN-A6V1-01 19 37619055 37619055 G A ZNF420 Missense_Mutation p.E388K 0.05 deleterious(0.03) possibly_damaging(0.57) TCGA-CN-A6V1-01 19 39912806 39912806 T G PLEKHG2 Missense_Mutation p.S519A 0.12 tolerated_low_confidence(0.52) benign(0.08) TCGA-CN-A6V1-01 19 39998560 39998560 G A DLL3 Silent p.A588A 0.07 TCGA-CN-A6V1-01 19 40715015 40715015 G C MAP3K10 Missense_Mutation p.E481Q 0.07 tolerated(1) benign(0.074) TCGA-CN-A6V1-01 19 40902682 40902682 G A PRX Missense_Mutation p.S526L 0.04 tolerated(0.13) possibly_damaging(0.519) TCGA-CN-A6V1-01 19 40904427 40904427 G A PRX Intron 0.10 TCGA-CN-A6V1-01 19 51955714 51955714 G C SIGLEC8 Missense_Mutation p.I473M 0.07 deleterious(0) probably_damaging(0.994) TCGA-CN-A6V1-01 19 52918855 52918855 C T ZNF528 Silent p.F250F 0.04 TCGA-CN-A6V1-01 19 53344689 53344689 G A ZNF468 Silent p.L286L 0.06 TCGA-CN-A6V1-01 19 54327417 54327417 G A NLRP12 Silent p.T4T 0.11 TCGA-CN-A6V1-01 19 57327616 57327616 G C PEG3 Missense_Mutation p.Q732E 0.05 deleterious(0) probably_damaging(0.935) TCGA-CN-A6V1-01 19 58187634 58187634 G A ZSCAN4 Missense_Mutation p.E41K 0.07 tolerated(0.4) benign(0.031) TCGA-CN-A6V1-01 19 6694573 6694573 G A C3 Missense_Mutation p.S1008L 0.08 deleterious(0.03) possibly_damaging(0.455) TCGA-CN-A6V1-01 19 7812249 7812249 C T CD209 Missense_Mutation p.E17K 0.06 deleterious(0.03) possibly_damaging(0.874) TCGA-CN-A6V1-01 19 7812273 7812273 C T CD209 Intron 0.05 TCGA-CN-A6V1-01 19 8656945 8656945 C T ADAMTS10 Missense_Mutation p.E544K 0.06 tolerated(0.21) benign(0.293) TCGA-CN-A6V1-01 19 880111 880111 G A MED16 Silent p.I393I 0.15 TCGA-CN-A6V1-01 19 9009320 9009320 G C MUC16 Missense_Mutation p.F13051L 0.08 benign(0.364) TCGA-CN-A6V1-01 19 9011002 9011002 G A MUC16 Silent p.F12972F 0.05 TCGA-CN-A6V1-01 1 101190204 101190204 C T VCAM1 Missense_Mutation p.S229F 0.06 deleterious(0.04) benign(0.031) TCGA-CN-A6V1-01 1 10523546 10523546 G A DFFA Silent p.L191L 0.04 TCGA-CN-A6V1-01 1 112019465 112019465 C T C1orf162 Missense_Mutation p.A28V 0.05 tolerated(0.13) benign(0.022) TCGA-CN-A6V1-01 1 112042929 112042929 G A ADORA3 Intron 0.06 TCGA-CN-A6V1-01 1 112318678 112318678 C T KCND3 3'UTR 0.07 TCGA-CN-A6V1-01 1 114196526 114196526 G C MAGI3 Missense_Mutation p.E839Q 0.06 tolerated(0.29) benign(0.201) TCGA-CN-A6V1-01 1 145586858 145586858 C G NUDT17 Missense_Mutation p.R277T 0.06 deleterious(0.02) benign(0.178) TCGA-CN-A6V1-01 1 149783901 149783901 G A HIST2H2BF 5'UTR 0.06 TCGA-CN-A6V1-01 1 152080837 152080837 C G TCHH Missense_Mutation p.R1619T 0.08 unknown(0) TCGA-CN-A6V1-01 1 152277637 152277637 G A FLG Missense_Mutation p.S3242F 0.05 unknown(0) TCGA-CN-A6V1-01 1 155885709 155885710 - T KIAA0907 Frame_Shift_Ins p.E534Rfs*4 0.13 TCGA-CN-A6V1-01 1 156502888 156502888 G A IQGAP3 Silent p.I1329I 0.10 TCGA-CN-A6V1-01 1 161479635 161479635 C T FCGR2A Silent p.H130H 0.07 TCGA-CN-A6V1-01 1 183913451 183913451 C T COLGALT2 Missense_Mutation p.D426N 0.06 tolerated(0.21) benign(0.021) TCGA-CN-A6V1-01 1 198233296 198233296 C T NEK7 Silent p.F101F 0.05 TCGA-CN-A6V1-01 1 205027780 205027780 C T CNTN2 Missense_Mutation p.A159V 0.11 deleterious(0.03) benign(0.109) TCGA-CN-A6V1-01 1 2234792 2234792 G A SKI Silent p.A388A 0.04 TCGA-CN-A6V1-01 1 223943283 223943283 C G CAPN2 Missense_Mutation p.Q413E 0.10 deleterious(0.01) probably_damaging(0.963) TCGA-CN-A6V1-01 1 226108948 226108948 G A RP4-559A3.7 Silent p.L179L 0.10 TCGA-CN-A6V1-01 1 229633923 229633923 G C NUP133 Missense_Mutation p.S260C 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-CN-A6V1-01 1 24129001 24129001 C T HMGCL Silent p.L310L 0.05 TCGA-CN-A6V1-01 1 248366390 248366390 C T OR2M3 Silent p.T7T 0.07 TCGA-CN-A6V1-01 1 27057874 27057874 C T ARID1A Nonsense_Mutation p.Q528* 0.06 TCGA-CN-A6V1-01 1 29542604 29542604 C T MECR Missense_Mutation p.E107K 0.05 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 1 32210257 32210257 G A BAI2 Missense_Mutation p.A305V 0.12 deleterious(0.02) probably_damaging(0.958) TCGA-CN-A6V1-01 1 34066517 34066517 G C CSMD2 Silent p.L2270L 0.05 TCGA-CN-A6V1-01 1 49193586 49193586 C T BEND5 Missense_Mutation p.R413Q 0.07 deleterious_low_confidence(0.03) probably_damaging(0.985) TCGA-CN-A6V1-01 1 51930972 51930972 G A EPS15 Silent p.I112I 0.07 TCGA-CN-A6V1-01 1 65349056 65349056 C T JAK1 Missense_Mutation p.E37K 0.09 tolerated(0.5) probably_damaging(0.971) TCGA-CN-A6V1-01 1 68948054 68948054 G A DEPDC1 Silent p.F479F 0.10 TCGA-CN-A6V1-01 20 10025043 10025043 C T ANKEF1 Missense_Mutation p.S183F 0.05 deleterious(0.02) possibly_damaging(0.646) TCGA-CN-A6V1-01 20 2321172 2321172 C T TGM3 Missense_Mutation p.S676F 0.06 tolerated(0.06) probably_damaging(1) TCGA-CN-A6V1-01 20 25472104 25472104 C T NINL Silent p.A456A 0.09 TCGA-CN-A6V1-01 20 33632354 33632354 C T TRPC4AP Silent p.Q273Q 0.09 TCGA-CN-A6V1-01 20 47886750 47886750 C T ZNFX1 Silent p.Q533Q 0.08 TCGA-CN-A6V1-01 20 50140149 50140149 G C NFATC2 Missense_Mutation p.H211D 0.04 tolerated(0.2) benign(0.021) TCGA-CN-A6V1-01 20 52199008 52199008 C T ZNF217 Missense_Mutation p.E120K 0.04 deleterious(0.05) benign(0.035) TCGA-CN-A6V1-01 20 61492825 61492825 C T TCFL5 Silent p.E66E 0.12 TCGA-CN-A6V1-01 21 34799243 34799243 C T IFNGR2 Silent p.L155L 0.05 TCGA-CN-A6V1-01 21 34799249 34799249 C G IFNGR2 Missense_Mutation p.I157M 0.05 deleterious(0) probably_damaging(0.965) TCGA-CN-A6V1-01 22 17472947 17472947 G A GAB4 Silent p.L98L 0.04 TCGA-CN-A6V1-01 22 17589873 17589873 G A IL17RA Silent p.E588E 0.14 TCGA-CN-A6V1-01 22 21104247 21104247 C T PI4KA Missense_Mutation p.M1063I 0.09 tolerated(0.06) benign(0.012) TCGA-CN-A6V1-01 22 24313562 24313562 G C DDTL Missense_Mutation p.L124F 0.06 tolerated_low_confidence(0.14) benign(0.068) TCGA-CN-A6V1-01 22 38245565 38245565 G C EIF3L Intron 0.06 TCGA-CN-A6V1-01 22 43230262 43230262 G A ARFGAP3 Missense_Mutation p.H155Y 0.04 deleterious(0.05) possibly_damaging(0.895) TCGA-CN-A6V1-01 2 113090109 113090109 C T ZC3H6 3'UTR 0.08 TCGA-CN-A6V1-01 2 120885271 120885271 C T EPB41L5 Silent p.L449L 0.04 TCGA-CN-A6V1-01 2 131102966 131102966 G C IMP4 Missense_Mutation p.D72H 0.14 deleterious(0) probably_damaging(0.99) TCGA-CN-A6V1-01 2 135908057 135908057 C T RAB3GAP1 Missense_Mutation p.S681L 0.08 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 2 152301876 152301876 G A RIF1 Missense_Mutation p.A671T 0.08 deleterious(0) possibly_damaging(0.873) TCGA-CN-A6V1-01 2 160085351 160085351 G C TANC1 Missense_Mutation p.L1365F 0.06 deleterious(0) probably_damaging(0.928) TCGA-CN-A6V1-01 2 166210926 166210926 A G SCN2A Silent p.K1048K 0.08 TCGA-CN-A6V1-01 2 166859020 166859020 C T SCN1A Missense_Mutation p.D1416N 0.06 deleterious(0.04) probably_damaging(1) TCGA-CN-A6V1-01 2 166894586 166894586 G A SCN1A Silent p.I882I 0.05 TCGA-CN-A6V1-01 2 171902835 171902835 C T TLK1 Missense_Mutation p.E340K 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-CN-A6V1-01 2 179401824 179401824 C T TTN Missense_Mutation p.E33338K 0.12 TCGA-CN-A6V1-01 2 179414070 179414070 C G TTN Missense_Mutation p.K30761N 0.07 TCGA-CN-A6V1-01 2 179444088 179444088 C T TTN Missense_Mutation p.D22557N 0.08 TCGA-CN-A6V1-01 2 179475984 179475984 C G TTN Missense_Mutation p.D16958H 0.12 TCGA-CN-A6V1-01 2 179611824 179611824 C T TTN Intron 0.08 TCGA-CN-A6V1-01 2 192701254 192701254 C T SDPR Missense_Mutation p.E225K 0.05 tolerated(0.15) benign(0.221) TCGA-CN-A6V1-01 2 196571476 196571476 G A SLC39A10 Missense_Mutation p.M451I 0.08 deleterious(0.01) benign(0.338) TCGA-CN-A6V1-01 2 196664127 196664127 C G DNAH7 Missense_Mutation p.D3416H 0.05 deleterious(0) probably_damaging(0.983) TCGA-CN-A6V1-01 2 197008314 197008314 G A STK17B Missense_Mutation p.R193W 0.06 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 2 197534573 197534573 C G CCDC150 Silent p.L303L 0.06 TCGA-CN-A6V1-01 2 198260841 198260841 C T SF3B1 Missense_Mutation p.E1160K 0.07 deleterious(0.05) possibly_damaging(0.54) TCGA-CN-A6V1-01 2 201680219 201680219 C G BZW1 Missense_Mutation p.L106V 0.09 deleterious(0) possibly_damaging(0.744) TCGA-CN-A6V1-01 2 202343234 202343234 G - STRADB Frame_Shift_Del p.S327Mfs*46 0.10 TCGA-CN-A6V1-01 2 203383743 203383743 G C BMPR2 Missense_Mutation p.E274Q 0.06 deleterious(0.01) probably_damaging(0.972) TCGA-CN-A6V1-01 2 211421499 211421499 G A CPS1 Silent p.L20L 0.06 TCGA-CN-A6V1-01 2 216274733 216274733 G A FN1 Silent p.I682I 0.05 TCGA-CN-A6V1-01 2 219144753 219144753 C T TMBIM1 Missense_Mutation p.R100Q 0.08 deleterious(0.03) benign(0.377) TCGA-CN-A6V1-01 2 23980425 23980425 G A ATAD2B Missense_Mutation p.S1314L 0.04 tolerated(0.34) benign(0) TCGA-CN-A6V1-01 2 26533860 26533860 C T GPR113 Silent p.L912L 0.09 TCGA-CN-A6V1-01 2 30457343 30457343 C T LBH Silent p.L33L 0.07 TCGA-CN-A6V1-01 2 30953619 30953619 C G CAPN13 3'UTR 0.05 TCGA-CN-A6V1-01 2 58386584 58386584 C G VRK2 Nonsense_Mutation p.S428* 0.08 TCGA-CN-A6V1-01 2 70406677 70406677 C T C2orf42 Silent p.K307K 0.08 TCGA-CN-A6V1-01 2 73115471 73115471 C T SPR Silent p.F111F 0.06 TCGA-CN-A6V1-01 2 88885506 88885506 G A EIF2AK3 Silent p.L501L 0.08 TCGA-CN-A6V1-01 2 97490929 97490929 G A CNNM3 Missense_Mutation p.E454K 0.08 deleterious(0.02) benign(0.359) TCGA-CN-A6V1-01 3 10094157 10094157 G C FANCD2 Missense_Mutation p.Q544H 0.06 tolerated(0.11) benign(0.078) TCGA-CN-A6V1-01 3 107097120 107097120 C A CCDC54 Nonsense_Mutation p.S229* 0.06 TCGA-CN-A6V1-01 3 113697717 113697717 C T KIAA1407 Silent p.Q816Q 0.06 TCGA-CN-A6V1-01 3 114070460 114070460 A T ZBTB20 Silent p.I155I 0.15 TCGA-CN-A6V1-01 3 121647331 121647331 G A SLC15A2 Missense_Mutation p.D424N 0.07 tolerated(0.71) benign(0.005) TCGA-CN-A6V1-01 3 122134192 122134192 C T WDR5B Missense_Mutation p.D62N 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-CN-A6V1-01 3 1262490 1262490 C T CNTN6 Missense_Mutation p.H59Y 0.05 tolerated(0.97) benign(0.001) TCGA-CN-A6V1-01 3 155628611 155628611 G A GMPS Silent p.V219V 0.12 TCGA-CN-A6V1-01 3 160960409 160960409 C G NMD3 Missense_Mutation p.R329G 0.08 tolerated(0.3) benign(0.045) TCGA-CN-A6V1-01 3 16254169 16254169 G A GALNT15 Missense_Mutation p.E431K 0.06 tolerated(0.14) benign(0.055) TCGA-CN-A6V1-01 3 178916854 178916854 G A PIK3CA Missense_Mutation p.E81K 0.05 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 3 196054326 196054326 G C TM4SF19 Missense_Mutation p.L46V 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-CN-A6V1-01 3 196650379 196650379 C G SENP5 Nonsense_Mutation p.S660* 0.04 TCGA-CN-A6V1-01 3 38138180 38138180 C T DLEC1 Silent p.I764I 0.06 TCGA-CN-A6V1-01 3 44952515 44952515 G A TGM4 Missense_Mutation p.E558K 0.07 tolerated(0.06) benign(0.223) TCGA-CN-A6V1-01 3 71027029 71027029 C T FOXP1 Missense_Mutation p.G435E 0.05 deleterious(0.02) benign(0.043) TCGA-CN-A6V1-01 3 74411183 74411183 G A CNTN3 Missense_Mutation p.P408S 0.09 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 3 81695605 81695605 G A GBE1 Silent p.I240I 0.08 TCGA-CN-A6V1-01 4 101946944 101946944 G A PPP3CA 3'UTR 0.12 TCGA-CN-A6V1-01 4 114276810 114276810 G C ANK2 Missense_Mutation p.E2346Q 0.08 benign(0.197) TCGA-CN-A6V1-01 4 114381309 114381309 C G CAMK2D Missense_Mutation p.E400Q 0.04 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-CN-A6V1-01 4 122605900 122605900 G A ANXA5 Silent p.L41L 0.05 TCGA-CN-A6V1-01 4 123275103 123275103 G A KIAA1109 Missense_Mutation p.E4746K 0.07 probably_damaging(0.982) TCGA-CN-A6V1-01 4 126408688 126408688 C T FAT4 Silent p.F4335F 0.07 TCGA-CN-A6V1-01 4 128806873 128806873 C T PLK4 Silent p.F116F 0.07 TCGA-CN-A6V1-01 4 155254071 155254071 G A DCHS2 Missense_Mutation p.L598F 0.10 tolerated(0.15) possibly_damaging(0.726) TCGA-CN-A6V1-01 4 15850161 15850161 G C CD38 Splice_Site p.X280_splice 0.09 TCGA-CN-A6V1-01 4 15850186 15850186 G C CD38 Silent p.V288V 0.09 TCGA-CN-A6V1-01 4 170400599 170400599 C T NEK1 Missense_Mutation p.M698I 0.08 tolerated(0.52) benign(0.001) TCGA-CN-A6V1-01 4 174309513 174309513 C T SCRG1 Silent p.V92V 0.06 TCGA-CN-A6V1-01 4 185012400 185012400 G A ENPP6 Missense_Mutation p.A418V 0.07 tolerated(0.29) benign(0.002) TCGA-CN-A6V1-01 4 187004931 187004931 A G TLR3 Silent p.K697K 0.11 TCGA-CN-A6V1-01 4 23886407 23886407 G A PPARGC1A Nonsense_Mutation p.Q68* 0.06 TCGA-CN-A6V1-01 4 48502084 48502084 C G FRYL Missense_Mutation p.E2916Q 0.05 tolerated(0.26) benign(0.304) TCGA-CN-A6V1-01 4 48578166 48578166 G A FRYL Silent p.L868L 0.08 TCGA-CN-A6V1-01 4 62598777 62598777 C T LPHN3 Missense_Mutation p.R234W 0.11 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 4 68812202 68812202 C A TMPRSS11A Silent p.V33V 0.08 TCGA-CN-A6V1-01 4 72215774 72215774 C T SLC4A4 Missense_Mutation p.L179F 0.12 tolerated(0.23) benign(0.232) TCGA-CN-A6V1-01 4 83784530 83784530 C T SEC31A Missense_Mutation p.D484N 0.04 deleterious(0.02) probably_damaging(0.953) TCGA-CN-A6V1-01 5 112871475 112871475 G A YTHDC2 Missense_Mutation p.G361E 0.08 deleterious(0.02) benign(0.187) TCGA-CN-A6V1-01 5 129070703 129070703 G A ADAMTS19 Missense_Mutation p.E1125K 0.06 tolerated(0.07) possibly_damaging(0.665) TCGA-CN-A6V1-01 5 137342716 137342716 C T FAM13B Missense_Mutation p.E271K 0.04 tolerated(0.39) benign(0.056) TCGA-CN-A6V1-01 5 140180825 140180825 C G PCDHA3 Missense_Mutation p.L15V 0.05 deleterious_low_confidence(0.01) benign(0.196) TCGA-CN-A6V1-01 5 140594698 140594698 C T PCDHB13 Silent p.L335L 0.08 TCGA-CN-A6V1-01 5 140625549 140625549 G A PCDHB15 Missense_Mutation p.E135K 0.04 deleterious_low_confidence(0.03) benign(0.006) TCGA-CN-A6V1-01 5 146730662 146730662 G A STK32A Silent p.A169A 0.06 TCGA-CN-A6V1-01 5 156533768 156533768 G A HAVCR2 Silent p.F88F 0.09 TCGA-CN-A6V1-01 5 32724823 32724823 C T NPR3 Silent p.S263S 0.13 TCGA-CN-A6V1-01 5 37027509 37027509 C T NIPBL Nonsense_Mutation p.Q1953* 0.15 TCGA-CN-A6V1-01 5 50091226 50091226 C G PARP8 Missense_Mutation p.S468C 0.08 tolerated_low_confidence(0.06) benign(0.401) TCGA-CN-A6V1-01 5 65084006 65084006 G A NLN Silent p.L340L 0.07 TCGA-CN-A6V1-01 5 73091192 73091192 G T ARHGEF28 Nonsense_Mutation p.E334* 0.07 TCGA-CN-A6V1-01 5 74325489 74325489 G A GCNT4 Missense_Mutation p.S125L 0.07 deleterious(0.01) probably_damaging(0.916) TCGA-CN-A6V1-01 5 78359574 78359574 C T DMGDH Nonsense_Mutation p.W46* 0.05 TCGA-CN-A6V1-01 5 79854250 79854250 C G ANKRD34B 3'UTR 0.13 TCGA-CN-A6V1-01 6 111694120 111694120 G A REV3L Missense_Mutation p.S1813L 0.05 tolerated_low_confidence(0.12) benign(0.415) TCGA-CN-A6V1-01 6 129929118 129929118 C T ARHGAP18 Missense_Mutation p.S401N 0.07 tolerated(0.06) possibly_damaging(0.688) TCGA-CN-A6V1-01 6 132068003 132068003 C T ENPP3 Silent p.L845L 0.06 TCGA-CN-A6V1-01 6 13584426 13584426 G C SIRT5 Missense_Mutation p.Q28H 0.06 deleterious_low_confidence(0.01) benign(0.104) TCGA-CN-A6V1-01 6 158613079 158613079 C G GTF2H5 Missense_Mutation p.Q36E 0.09 tolerated(0.16) benign(0.004) TCGA-CN-A6V1-01 6 165806202 165806202 G A PDE10A Missense_Mutation p.A530V 0.10 deleterious(0) probably_damaging(0.995) TCGA-CN-A6V1-01 6 166889325 166889325 C G RPS6KA2 Intron 0.06 TCGA-CN-A6V1-01 6 26393159 26393159 G A BTN2A2 Silent p.L512L 0.08 TCGA-CN-A6V1-01 6 28872323 28872323 G T TRIM27 Missense_Mutation p.L356M 0.18 tolerated(0.22) probably_damaging(0.961) TCGA-CN-A6V1-01 6 30138306 30138306 G C TRIM15 Missense_Mutation p.E254Q 0.09 deleterious(0.03) benign(0.439) TCGA-CN-A6V1-01 6 31701363 31701363 G A CLIC1 Missense_Mutation p.S121L 0.08 deleterious(0.04) benign(0.099) TCGA-CN-A6V1-01 6 32085106 32085106 C T ATF6B Silent p.E536E 0.13 TCGA-CN-A6V1-01 6 32185850 32185850 C G NOTCH4 Missense_Mutation p.E516Q 0.18 deleterious(0) possibly_damaging(0.903) TCGA-CN-A6V1-01 6 33286925 33286925 G A DAXX Missense_Mutation p.S671F 0.06 tolerated(0.47) benign(0.09) TCGA-CN-A6V1-01 6 33424102 33424102 C T ZBTB9 Missense_Mutation p.R409W 0.14 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V1-01 6 39073331 39073331 C G SAYSD1 Missense_Mutation p.E143D 0.14 tolerated(0.11) benign(0.358) TCGA-CN-A6V1-01 6 42620295 42620295 C T UBR2 Missense_Mutation p.S894L 0.06 deleterious(0) benign(0.04) TCGA-CN-A6V1-01 6 52053869 52053869 G C IL17A Missense_Mutation p.E83Q 0.10 deleterious(0.04) possibly_damaging(0.828) TCGA-CN-A6V1-01 6 53370645 53370645 G A GCLC Missense_Mutation p.P416S 0.05 tolerated(0.05) possibly_damaging(0.649) TCGA-CN-A6V1-01 6 549252 549252 G C EXOC2 Missense_Mutation p.L721V 0.07 tolerated(0.9) possibly_damaging(0.899) TCGA-CN-A6V1-01 6 80718147 80718147 G C TTK Missense_Mutation p.R136T 0.04 deleterious(0.02) benign(0.217) TCGA-CN-A6V1-01 7 100551290 100551290 C T MUC3A Missense_Mutation p.S14L 0.09 tolerated_low_confidence(0.17) unknown(0) TCGA-CN-A6V1-01 7 123152314 123152314 G A IQUB Silent p.V27V 0.05 TCGA-CN-A6V1-01 7 124387288 124387288 G A GPR37 Missense_Mutation p.S378L 0.07 deleterious(0.02) probably_damaging(1) TCGA-CN-A6V1-01 7 148457442 148457442 G A CUL1 Missense_Mutation p.E215K 0.20 deleterious(0) possibly_damaging(0.904) TCGA-CN-A6V1-01 7 148457514 148457514 G A CUL1 Missense_Mutation p.D239N 0.06 tolerated(0.4) possibly_damaging(0.827) TCGA-CN-A6V1-01 7 151851163 151851163 G A KMT2C Missense_Mutation p.P4070S 0.10 benign(0.002) TCGA-CN-A6V1-01 7 157046701 157046701 G C UBE3C Silent p.R916R 0.12 TCGA-CN-A6V1-01 7 2290555 2290555 G C NUDT1 Missense_Mutation p.K153N 0.04 tolerated(0.22) benign(0.023) TCGA-CN-A6V1-01 7 44524878 44524878 G A NUDCD3 Silent p.F66F 0.08 TCGA-CN-A6V1-01 7 5104496 5104496 C T RBAK Missense_Mutation p.S470L 0.07 deleterious(0) probably_damaging(0.996) TCGA-CN-A6V1-01 7 78150787 78150787 C T MAGI2 Silent p.E238E 0.09 TCGA-CN-A6V1-01 7 87072740 87072740 C T ABCB4 Silent p.L417L 0.05 TCGA-CN-A6V1-01 7 91682117 91682117 G C AKAP9 Missense_Mutation p.E1816Q 0.06 probably_damaging(0.982) TCGA-CN-A6V1-01 7 98522761 98522761 G A TRRAP Silent p.L950L 0.10 TCGA-CN-A6V1-01 7 98961223 98961223 C T ARPC1A Silent p.G347G 0.12 TCGA-CN-A6V1-01 8 105260960 105260960 G A RIMS2 Missense_Mutation p.D1170N 0.04 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CN-A6V1-01 8 113395847 113395847 C T CSMD3 Missense_Mutation p.D1994N 0.05 deleterious(0) probably_damaging(0.933) TCGA-CN-A6V1-01 8 121500404 121500404 G A MTBP Missense_Mutation p.D391N 0.10 deleterious(0.04) benign(0.127) TCGA-CN-A6V1-01 8 133894785 133894785 G A TG Missense_Mutation p.E273K 0.03 tolerated(0.06) possibly_damaging(0.521) TCGA-CN-A6V1-01 8 145094865 145094865 G A SPATC1 Silent p.V89V 0.09 TCGA-CN-A6V1-01 8 1649519 1649519 G A DLGAP2 Missense_Mutation p.E959K 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V1-01 8 17169112 17169112 G A MTMR7 Missense_Mutation p.H337Y 0.07 deleterious(0) probably_damaging(0.995) TCGA-CN-A6V1-01 8 17722252 17722252 G C FGL1 Missense_Mutation p.S263C 0.17 deleterious(0) probably_damaging(0.983) TCGA-CN-A6V1-01 8 23160816 23160816 C G LOXL2 Missense_Mutation p.E659Q 0.05 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 8 37691311 37691311 C T GPR124 Nonsense_Mutation p.Q468* 0.06 TCGA-CN-A6V1-01 8 37732103 37732103 C G RAB11FIP1 Missense_Mutation p.E518Q 0.06 deleterious(0.02) benign(0.336) TCGA-CN-A6V1-01 9 114538159 114538159 G A C9orf84 Silent p.V54V 0.07 TCGA-CN-A6V1-01 9 115593065 115593065 G A SNX30 Missense_Mutation p.E174K 0.06 tolerated(0.14) possibly_damaging(0.545) TCGA-CN-A6V1-01 9 125316290 125316290 C G OR1N2 Nonsense_Mutation p.S281* 0.06 TCGA-CN-A6V1-01 9 125673418 125673418 G A ZBTB6 Missense_Mutation p.H312Y 0.06 deleterious(0.03) possibly_damaging(0.908) TCGA-CN-A6V1-01 9 127549484 127549484 G A OLFML2A Silent p.E107E 0.09 TCGA-CN-A6V1-01 9 130854214 130854214 G A SLC25A25 Intron 0.05 TCGA-CN-A6V1-01 9 131348158 131348158 G A SPTAN1 Missense_Mutation p.D898N 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-CN-A6V1-01 9 135906340 135906340 G A GTF3C5 5'Flank 0.17 TCGA-CN-A6V1-01 9 135947175 135947175 G A CEL 3'UTR 0.09 TCGA-CN-A6V1-01 9 27209227 27209227 G A TEK Missense_Mutation p.R895Q 0.09 deleterious(0) probably_damaging(0.972) TCGA-CN-A6V1-01 9 37745714 37745714 G C FRMPD1 Missense_Mutation p.E1229Q 0.04 deleterious_low_confidence(0.02) benign(0.145) TCGA-CN-A6V1-01 9 5763450 5763450 G A KIAA1432 Missense_Mutation p.R808K 0.07 tolerated(0.98) benign(0.001) TCGA-CN-A6V1-01 9 5922222 5922222 C T KIAA2026 Silent p.Q1258Q 0.08 TCGA-CN-A6V1-01 9 74360248 74360248 C G TMEM2 Missense_Mutation p.W240C 0.04 deleterious(0) probably_damaging(1) TCGA-CN-A6V1-01 X 101092466 101092466 C G NXF5 Missense_Mutation p.Q360H 0.11 tolerated(0.19) benign(0.187) TCGA-CN-A6V1-01 X 134706908 134706908 G C DDX26B Missense_Mutation p.E486Q 0.07 tolerated(0.12) benign(0.146) TCGA-CN-A6V1-01 X 13794420 13794420 G C GPM6B Missense_Mutation p.F258L 0.10 tolerated(0.36) benign(0.246) TCGA-CN-A6V1-01 X 153277256 153277256 C T IRAK1 3'UTR 0.14 TCGA-CN-A6V1-01 X 154019323 154019323 C T MPP1 Missense_Mutation p.E116K 0.05 tolerated(0.15) possibly_damaging(0.823) TCGA-CN-A6V1-01 X 18626935 18626935 G A CDKL5 Missense_Mutation p.G650E 0.12 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-CN-A6V1-01 X 37285197 37285197 G A PRRG1 Missense_Mutation p.E39K 0.15 deleterious(0) possibly_damaging(0.872) TCGA-CN-A6V1-01 X 48934116 48934116 C G WDR45 Missense_Mutation p.E138Q 0.07 tolerated(0.47) benign(0.064) TCGA-CN-A6V1-01 X 77913882 77913882 C T ZCCHC5 Silent p.L12L 0.11 TCGA-CN-A6V1-01 X 79698716 79698716 G A FAM46D Silent p.R226R 0.16 TCGA-CN-A6V3-01 10 102053067 102053067 C T PKD2L1 Missense_Mutation p.E577K 0.17 deleterious(0.01) benign(0.12) TCGA-CN-A6V3-01 10 105185171 105185171 C T PDCD11 Missense_Mutation p.A1065V 0.20 tolerated(0.69) benign(0.116) TCGA-CN-A6V3-01 10 133769195 133769195 A T PPP2R2D Missense_Mutation p.M333L 0.19 tolerated(0.34) benign(0.05) TCGA-CN-A6V3-01 10 26377306 26377306 G T MYO3A Nonsense_Mutation p.E512* 0.22 TCGA-CN-A6V3-01 10 37442498 37442498 A C ANKRD30A Splice_Site p.X514_splice 0.05 TCGA-CN-A6V3-01 10 38404180 38404180 G A ZNF37A Nonsense_Mutation p.W67* 0.18 TCGA-CN-A6V3-01 10 55826622 55826622 T A PCDH15 Silent p.I705I 0.19 TCGA-CN-A6V3-01 10 84733562 84733562 C A NRG3 Missense_Mutation p.H435N 0.23 tolerated(0.52) benign(0.441) TCGA-CN-A6V3-01 11 113683212 113683212 C T USP28 Silent p.L586L 0.08 TCGA-CN-A6V3-01 11 118342477 118342477 A G KMT2A Silent p.K201K 0.28 TCGA-CN-A6V3-01 11 12281413 12281413 C A MICAL2 Silent p.A1101A 0.18 TCGA-CN-A6V3-01 11 123814394 123814394 A T OR6T1 Missense_Mutation p.I51K 0.26 tolerated(0.24) benign(0.028) TCGA-CN-A6V3-01 11 20066805 20066805 G T NAV2 Missense_Mutation p.G1187V 0.18 deleterious(0) possibly_damaging(0.77) TCGA-CN-A6V3-01 11 30033734 30033734 G A KCNA4 Silent p.G164G 0.07 TCGA-CN-A6V3-01 11 5322799 5322799 T C OR51B4 Silent p.P126P 0.20 TCGA-CN-A6V3-01 11 5364174 5364174 C A OR51B5 Missense_Mutation p.R194L 0.33 tolerated(0.3) benign(0.023) TCGA-CN-A6V3-01 11 55541364 55541364 T A OR5D13 Missense_Mutation p.Y151N 0.23 deleterious(0) probably_damaging(0.996) TCGA-CN-A6V3-01 11 55606771 55606771 G A OR5D16 Missense_Mutation p.E182K 0.24 deleterious(0.01) benign(0.443) TCGA-CN-A6V3-01 11 55703522 55703522 C G OR5I1 Missense_Mutation p.A119P 0.21 deleterious(0.01) possibly_damaging(0.791) TCGA-CN-A6V3-01 11 56000386 56000386 G A OR5T2 Silent p.S92S 0.27 TCGA-CN-A6V3-01 11 57087949 57087949 C A TNKS1BP1 Missense_Mutation p.G111V 0.18 deleterious(0.01) possibly_damaging(0.733) TCGA-CN-A6V3-01 11 57087950 57087950 C A TNKS1BP1 Nonsense_Mutation p.G111* 0.21 TCGA-CN-A6V3-01 11 58206882 58206882 A T OR5B12 Missense_Mutation p.I248N 0.22 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CN-A6V3-01 11 60164123 60164123 T A MS4A14 Silent p.T24T 0.27 TCGA-CN-A6V3-01 11 65271539 65271539 A T MALAT1 RNA 0.31 TCGA-CN-A6V3-01 11 66192497 66192497 C T NPAS4 Silent p.D712D 0.25 TCGA-CN-A6V3-01 11 66332437 66332437 G C CTSF Missense_Mutation p.H362Q 0.18 tolerated(0.07) benign(0.017) TCGA-CN-A6V3-01 11 6648870 6648870 T C DCHS1 Silent p.L1800L 0.26 TCGA-CN-A6V3-01 11 73789342 73789342 T A C2CD3 Missense_Mutation p.E1474V 0.29 deleterious(0.04) possibly_damaging(0.835) TCGA-CN-A6V3-01 12 105540905 105540905 C T KIAA1033 Missense_Mutation p.T832M 0.11 tolerated(0.13) probably_damaging(0.96) TCGA-CN-A6V3-01 12 111742075 111742075 G C CUX2 Missense_Mutation p.S272T 0.12 tolerated(0.17) benign(0.104) TCGA-CN-A6V3-01 12 20766439 20766439 C A PDE3A Silent p.T358T 0.19 TCGA-CN-A6V3-01 12 21997758 21997758 G C ABCC9 Missense_Mutation p.T1063R 0.25 tolerated(0.59) benign(0.002) TCGA-CN-A6V3-01 12 32134419 32134419 C T KIAA1551 Missense_Mutation p.P177L 0.18 deleterious(0.04) probably_damaging(1) TCGA-CN-A6V3-01 12 39705291 39705291 T C KIF21A Missense_Mutation p.I1342V 0.20 tolerated(1) benign(0.004) TCGA-CN-A6V3-01 12 44913863 44913863 G A NELL2 Silent p.D825D 0.17 TCGA-CN-A6V3-01 12 48238538 48238538 C A VDR Missense_Mutation p.E475D 0.22 tolerated_low_confidence(0.12) benign(0.105) TCGA-CN-A6V3-01 12 48596947 48596947 G T OR10AD1 Silent p.G43G 0.22 TCGA-CN-A6V3-01 12 51566130 51566130 G T TFCP2 Missense_Mutation p.L26M 0.25 deleterious(0.04) possibly_damaging(0.678) TCGA-CN-A6V3-01 12 64678478 64678478 C A C12orf56 Nonsense_Mutation p.E266* 0.33 TCGA-CN-A6V3-01 12 72094709 72094709 G T TMEM19 Silent p.L315L 0.25 TCGA-CN-A6V3-01 12 7528460 7528460 G T CD163L1 Missense_Mutation p.A841D 0.25 deleterious(0) probably_damaging(0.979) TCGA-CN-A6V3-01 12 7559177 7559177 G A CD163L1 Silent p.T346T 0.25 TCGA-CN-A6V3-01 12 78225122 78225122 A T NAV3 5'UTR 0.35 TCGA-CN-A6V3-01 12 78400883 78400883 C G NAV3 Missense_Mutation p.P522R 0.26 deleterious(0) possibly_damaging(0.781) TCGA-CN-A6V3-01 12 81101646 81101646 C A MYF6 Missense_Mutation p.P50T 0.22 tolerated(0.68) benign(0.138) TCGA-CN-A6V3-01 12 81751874 81751874 C G PPFIA2 Missense_Mutation p.R587T 0.18 deleterious(0.04) possibly_damaging(0.617) TCGA-CN-A6V3-01 12 96688775 96688775 A C CDK17 Splice_Site p.X333_splice 0.22 TCGA-CN-A6V3-01 13 101844358 101844358 G C NALCN Missense_Mutation p.D558E 0.16 tolerated(0.67) benign(0.232) TCGA-CN-A6V3-01 13 114322049 114322049 C - GRK1 Frame_Shift_Del p.Q118Rfs*13 0.29 TCGA-CN-A6V3-01 13 29599330 29599330 G A MTUS2 Silent p.K175K 0.23 TCGA-CN-A6V3-01 13 33703979 33703979 C A STARD13 Missense_Mutation p.G279W 0.11 deleterious(0.01) possibly_damaging(0.806) TCGA-CN-A6V3-01 13 58208702 58208702 C A PCDH17 Silent p.S674S 0.28 TCGA-CN-A6V3-01 13 67800388 67800388 C G PCDH9 Missense_Mutation p.D729H 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-CN-A6V3-01 13 70549918 70549918 G C KLHL1 Missense_Mutation p.H172D 0.21 tolerated(0.62) benign(0.021) TCGA-CN-A6V3-01 13 75930320 75930320 T A TBC1D4 Missense_Mutation p.Y413F 0.20 tolerated(1) probably_damaging(0.999) TCGA-CN-A6V3-01 13 77870791 77870791 A G MYCBP2 Silent p.N69N 0.28 TCGA-CN-A6V3-01 14 103336783 103336783 G T TRAF3 Missense_Mutation p.S82I 0.18 deleterious(0.02) benign(0.397) TCGA-CN-A6V3-01 14 105410152 105410152 T C AHNAK2 Missense_Mutation p.E3879G 0.25 possibly_damaging(0.607) TCGA-CN-A6V3-01 14 106791171 106791171 T A IGHV3-30 Missense_Mutation p.K62M 0.10 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-CN-A6V3-01 14 106791181 106791181 C A IGHV3-30 Missense_Mutation p.A59S 0.06 deleterious_low_confidence(0.03) benign(0.177) TCGA-CN-A6V3-01 14 38723900 38723900 A G CLEC14A Missense_Mutation p.L443P 0.17 deleterious(0.01) benign(0.446) TCGA-CN-A6V3-01 14 42361025 42361025 C A LRFN5 Missense_Mutation p.T653K 0.23 tolerated_low_confidence(0.77) benign(0.004) TCGA-CN-A6V3-01 14 77844481 77844481 T A SAMD15 Silent p.T240T 0.32 TCGA-CN-A6V3-01 14 88892630 88892630 T C SPATA7 Missense_Mutation p.F143L 0.30 tolerated(0.11) benign(0.026) TCGA-CN-A6V3-01 15 101528987 101528987 G A LRRK1 Silent p.V194V 0.30 TCGA-CN-A6V3-01 15 20657715 20657715 G A HERC2P3 RNA 0.19 TCGA-CN-A6V3-01 15 24922198 24922198 C A NPAP1 Missense_Mutation p.T395N 0.33 tolerated(0.16) possibly_damaging(0.716) TCGA-CN-A6V3-01 15 26806094 26806094 C T GABRB3 Silent p.K355K 0.22 TCGA-CN-A6V3-01 15 30054611 30054611 A G TJP1 Missense_Mutation p.F207S 0.15 deleterious(0) probably_damaging(0.983) TCGA-CN-A6V3-01 15 43044498 43044498 C A TTBK2 Silent p.L982L 0.24 TCGA-CN-A6V3-01 15 48058357 48058357 G T SEMA6D Missense_Mutation p.G542C 0.20 deleterious(0.04) probably_damaging(0.949) TCGA-CN-A6V3-01 15 73595048 73595048 C T NEO1 3'UTR 0.29 TCGA-CN-A6V3-01 15 83807902 83807902 G - HDGFRP3 3'UTR 0.31 TCGA-CN-A6V3-01 15 91827366 91827366 C G SV2B Silent p.V541V 0.26 TCGA-CN-A6V3-01 16 2052219 2052219 G A ZNF598 Missense_Mutation p.R295C 0.07 probably_damaging(0.997) TCGA-CN-A6V3-01 16 20566638 20566638 C T ACSM2B Silent p.V183V 0.10 TCGA-CN-A6V3-01 16 22325008 22325008 G T POLR3E Missense_Mutation p.K144N 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-CN-A6V3-01 16 26147116 26147116 C T HS3ST4 Silent p.P306P 0.25 TCGA-CN-A6V3-01 16 30719028 30719028 G A SRCAP Missense_Mutation p.E210K 0.33 unknown(0) TCGA-CN-A6V3-01 16 30747674 30747674 A T SRCAP Missense_Mutation p.M2295L 0.28 benign(0.025) TCGA-CN-A6V3-01 16 3788618 3788618 G A CREBBP Missense_Mutation p.R1446C 0.36 unknown(0) TCGA-CN-A6V3-01 16 4043454 4043454 C T ADCY9 Missense_Mutation p.G648R 0.23 tolerated(0.19) possibly_damaging(0.536) TCGA-CN-A6V3-01 16 49764794 49764794 A G ZNF423 Silent p.N55N 0.20 TCGA-CN-A6V3-01 16 57695823 57695823 G T GPR56 Missense_Mutation p.G633C 0.21 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 16 57695824 57695824 G T GPR56 Missense_Mutation p.G633V 0.20 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 16 66436634 66436634 C A CDH5 Missense_Mutation p.H639Q 0.35 deleterious(0.03) probably_damaging(0.993) TCGA-CN-A6V3-01 16 72170402 72170402 T C PMFBP1 Missense_Mutation p.Q383R 0.29 tolerated(0.08) possibly_damaging(0.702) TCGA-CN-A6V3-01 17 27010309 27010309 C T SUPT6H Silent p.A634A 0.32 TCGA-CN-A6V3-01 17 31618634 31618634 G C ASIC2 Missense_Mutation p.A167G 0.19 tolerated(0.47) probably_damaging(0.979) TCGA-CN-A6V3-01 17 33321390 33321390 T G LIG3 Missense_Mutation p.H517Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 17 42971853 42971853 T C EFTUD2 Missense_Mutation p.I13V 0.28 deleterious(0.04) benign(0.047) TCGA-CN-A6V3-01 17 43481428 43481428 C A ARHGAP27 Missense_Mutation p.R164L 0.26 tolerated(0.14) probably_damaging(0.996) TCGA-CN-A6V3-01 17 4805302 4805302 G T CHRNE Missense_Mutation p.A142D 0.22 deleterious(0) probably_damaging(0.972) TCGA-CN-A6V3-01 17 62582256 62582256 C A SMURF2 Nonsense_Mutation p.G145* 0.21 TCGA-CN-A6V3-01 17 7579372 7579372 G A TP53 Silent p.G105G 0.18 TCGA-CN-A6V3-01 17 7579373 7579373 C A TP53 Missense_Mutation p.G105V 0.18 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 17 78086706 78086706 T A GAA Silent p.P640P 0.13 TCGA-CN-A6V3-01 17 80684842 80684842 C T FN3KRP Missense_Mutation p.S242L 0.28 deleterious(0.01) possibly_damaging(0.869) TCGA-CN-A6V3-01 18 13885609 13885609 C A MC2R 5'UTR 0.22 TCGA-CN-A6V3-01 18 40503582 40503582 G T RIT2 Silent p.P127P 0.27 TCGA-CN-A6V3-01 18 47093899 47093899 T A LIPG Missense_Mutation p.W123R 0.20 deleterious(0) probably_damaging(0.986) TCGA-CN-A6V3-01 18 47769417 47769417 G A CCDC11 Nonsense_Mutation p.Q356* 0.23 TCGA-CN-A6V3-01 18 54363476 54363476 G T WDR7 Missense_Mutation p.W454L 0.19 deleterious(0.04) probably_damaging(0.91) TCGA-CN-A6V3-01 19 12866952 12866952 T C BEST2 Intron 0.20 TCGA-CN-A6V3-01 19 14024096 14024096 G C CC2D1A Missense_Mutation p.R165P 0.28 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 19 21131822 21131822 C A ZNF85 Missense_Mutation p.H168N 0.06 deleterious(0.02) possibly_damaging(0.876) TCGA-CN-A6V3-01 19 36351851 36351859 GGACGTGGG - KIRREL2 In_Frame_Del p.D324_G326del 0.28 TCGA-CN-A6V3-01 19 47935700 47935700 C T SLC8A2 Missense_Mutation p.D705N 0.23 deleterious(0.04) possibly_damaging(0.859) TCGA-CN-A6V3-01 19 48551572 48551572 C A PLA2G4C 3'UTR 0.18 TCGA-CN-A6V3-01 19 54758782 54758782 C T LILRB5 Silent p.K357K 0.19 TCGA-CN-A6V3-01 19 55301668 55301668 G T CTB-61M7.1 RNA 0.27 TCGA-CN-A6V3-01 19 55341906 55341906 A T KIR3DL1 3'UTR 0.47 TCGA-CN-A6V3-01 19 55495054 55495054 C T NLRP2 Missense_Mutation p.P663L 0.14 tolerated(0.6) benign(0.001) TCGA-CN-A6V3-01 19 57175946 57175946 C A ZNF835 Silent p.T207T 0.17 TCGA-CN-A6V3-01 19 58058921 58058921 A G ZNF550 Missense_Mutation p.Y190H 0.22 deleterious(0) probably_damaging(0.997) TCGA-CN-A6V3-01 19 9084378 9084378 G T MUC16 Silent p.V2479V 0.18 TCGA-CN-A6V3-01 1 103345284 103345284 G A COL11A1 Silent p.S1743S 0.11 TCGA-CN-A6V3-01 1 110714728 110714728 C T SLC6A17 Silent p.I111I 0.26 TCGA-CN-A6V3-01 1 111862902 111862902 C A CHIA Missense_Mutation p.S415R 0.32 tolerated(0.35) benign(0.232) TCGA-CN-A6V3-01 1 12921209 12921209 C T PRAMEF2 Missense_Mutation p.R334C 0.22 tolerated(0.27) benign(0.001) TCGA-CN-A6V3-01 1 152080828 152080828 C A TCHH Missense_Mutation p.R1622L 0.19 unknown(0) TCGA-CN-A6V3-01 1 158990176 158990176 A T IFI16 Nonsense_Mutation p.R340* 0.16 TCGA-CN-A6V3-01 1 16895572 16895572 T A NBPF1 Silent p.I870I 0.07 TCGA-CN-A6V3-01 1 178310641 178310641 G T RASAL2 Intron 0.16 TCGA-CN-A6V3-01 1 179851798 179851798 G A TOR1AIP1 Missense_Mutation p.R54Q 0.18 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CN-A6V3-01 1 186026439 186026439 G C HMCN1 Missense_Mutation p.L2406F 0.16 probably_damaging(0.998) TCGA-CN-A6V3-01 1 198703338 198703338 C G PTPRC Missense_Mutation p.P719R 0.19 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 1 203317209 203317209 T A FMOD Missense_Mutation p.T64S 0.21 tolerated(0.79) benign(0) TCGA-CN-A6V3-01 1 211192448 211192448 A - KCNH1 Frame_Shift_Del p.Y237Ifs*44 0.21 TCGA-CN-A6V3-01 1 21940560 21940560 A G RAP1GAP Missense_Mutation p.L169P 0.20 tolerated(0.19) possibly_damaging(0.723) TCGA-CN-A6V3-01 1 220100382 220100382 G C SLC30A10 Missense_Mutation p.L236V 0.24 deleterious(0) possibly_damaging(0.741) TCGA-CN-A6V3-01 1 229783323 229783323 G T URB2 Missense_Mutation p.V1325F 0.23 deleterious(0.02) benign(0.361) TCGA-CN-A6V3-01 1 234565013 234565013 T C TARBP1 Missense_Mutation p.I977V 0.26 tolerated(0.91) benign(0.021) TCGA-CN-A6V3-01 1 240492415 240492415 G C FMN2 Missense_Mutation p.G1419R 0.23 benign(0.246) TCGA-CN-A6V3-01 1 24078974 24078974 C T TCEB3 Silent p.L527L 0.17 TCGA-CN-A6V3-01 1 248084585 248084585 C T OR2T8 Missense_Mutation p.A89V 0.18 deleterious(0.03) benign(0.101) TCGA-CN-A6V3-01 1 248344149 248344149 C G OR2M2 Missense_Mutation p.L288V 0.23 tolerated(0.08) possibly_damaging(0.589) TCGA-CN-A6V3-01 1 248344165 248344165 G A OR2M2 Missense_Mutation p.R293H 0.18 deleterious(0.03) benign(0.009) TCGA-CN-A6V3-01 1 248487018 248487018 G T OR2M7 Missense_Mutation p.L285M 0.29 deleterious(0.03) possibly_damaging(0.573) TCGA-CN-A6V3-01 1 248512906 248512906 C A OR14C36 Missense_Mutation p.S277Y 0.21 deleterious(0) benign(0.248) TCGA-CN-A6V3-01 1 248636947 248636947 C G OR2T3 Missense_Mutation p.P99R 0.16 tolerated(0.29) possibly_damaging(0.688) TCGA-CN-A6V3-01 1 248636948 248636948 G T OR2T3 Silent p.P99P 0.18 TCGA-CN-A6V3-01 1 249211400 249211400 A T PGBD2 Missense_Mutation p.D206V 0.23 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 1 28160923 28160923 A T PPP1R8 Intron 0.19 TCGA-CN-A6V3-01 1 2938304 2938304 G A ACTRT2 Silent p.S18S 0.30 TCGA-CN-A6V3-01 1 32049108 32049108 G T TINAGL1 Nonsense_Mutation p.E172* 0.27 TCGA-CN-A6V3-01 1 33625346 33625346 C T TRIM62 Missense_Mutation p.R235Q 0.26 tolerated(0.86) possibly_damaging(0.51) TCGA-CN-A6V3-01 1 70397246 70397246 G T LRRC7 Missense_Mutation p.G197V 0.20 deleterious(0.01) benign(0.027) TCGA-CN-A6V3-01 1 78546488 78546488 G T GIPC2 Nonsense_Mutation p.E124* 0.09 TCGA-CN-A6V3-01 1 82431761 82431761 C A LPHN2 Silent p.L662L 0.11 TCGA-CN-A6V3-01 1 99422205 99422205 G C LPPR5 Missense_Mutation p.C110W 0.08 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 20 17581415 17581434 TCGCATTTTTTATGACATGA - DSTN Nonsense_Mutation p.C12* 0.35 TCGA-CN-A6V3-01 20 37631503 37631503 A G DHX35 Missense_Mutation p.T282A 0.23 deleterious(0) probably_damaging(0.931) TCGA-CN-A6V3-01 20 46277841 46277841 G A NCOA3 Silent p.Q1213Q 0.30 TCGA-CN-A6V3-01 20 46282344 46282346 CTA ATCAG NCOA3 3'UTR 0.56 TCGA-CN-A6V3-01 20 46292260 46292260 T C SULF2 Missense_Mutation p.M722V 0.37 tolerated(0.32) benign(0.114) TCGA-CN-A6V3-01 20 61950909 61950909 G A COL20A1 Silent p.P959P 0.23 TCGA-CN-A6V3-01 20 9404414 9404414 C A PLCB4 Missense_Mutation p.A768D 0.40 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 21 10914419 10914419 G T TPTE Missense_Mutation p.Q434K 0.05 tolerated(0.19) benign(0.088) TCGA-CN-A6V3-01 22 24567837 24567837 G T CABIN1 Missense_Mutation p.A1972S 0.26 tolerated_low_confidence(0.83) benign(0.002) TCGA-CN-A6V3-01 22 41305234 41305234 A G XPNPEP3 Missense_Mutation p.I322V 0.20 tolerated(0.46) benign(0.268) TCGA-CN-A6V3-01 2 152320477 152320477 A G RIF1 Silent p.K1481K 0.20 TCGA-CN-A6V3-01 2 158412844 158412844 G A ACVR1C Missense_Mutation p.A102V 0.24 tolerated(0.4) benign(0) TCGA-CN-A6V3-01 2 159389730 159389730 G A PKP4 Missense_Mutation p.E12K 0.14 tolerated(0.43) benign(0.184) TCGA-CN-A6V3-01 2 179997067 179997067 T C SESTD1 Silent p.L312L 0.23 TCGA-CN-A6V3-01 2 220309794 220309794 C G SPEG Missense_Mutation p.S242R 0.13 benign(0.026) TCGA-CN-A6V3-01 2 47637351 47637351 G T MSH2 Missense_Mutation p.G162V 0.23 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 2 77745754 77745754 T A LRRTM4 Missense_Mutation p.E414V 0.09 tolerated(0.06) possibly_damaging(0.56) TCGA-CN-A6V3-01 2 80530327 80530327 G T LRRTM1 Silent p.A206A 0.20 TCGA-CN-A6V3-01 2 90154188 90154188 C G IGKV3D-15 Missense_Mutation p.T92S 0.17 tolerated(0.11) benign(0.161) TCGA-CN-A6V3-01 2 90249210 90249210 G A IGKV1D-43 Missense_Mutation p.A56T 0.28 tolerated(0.25) benign(0.032) TCGA-CN-A6V3-01 3 101451477 101451477 A G CEP97 Missense_Mutation p.Y236C 0.41 deleterious(0) probably_damaging(0.976) TCGA-CN-A6V3-01 3 108812287 108812287 C T MORC1 Missense_Mutation p.E229K 0.12 tolerated(0.1) possibly_damaging(0.848) TCGA-CN-A6V3-01 3 121825286 121825286 G A CD86 Missense_Mutation p.M214I 0.04 tolerated(0.2) benign(0.03) TCGA-CN-A6V3-01 3 123005539 123005539 C A ADCY5 Missense_Mutation p.R1217L 0.05 tolerated(0.1) possibly_damaging(0.474) TCGA-CN-A6V3-01 3 130947448 130947448 G A NEK11 Silent p.E492E 0.05 TCGA-CN-A6V3-01 3 136240236 136240236 G C STAG1 Silent p.T165T 0.06 TCGA-CN-A6V3-01 3 147131305 147131305 G T ZIC1 Silent p.A437A 0.07 TCGA-CN-A6V3-01 3 164905727 164905727 C A SLITRK3 Silent p.P964P 0.46 TCGA-CN-A6V3-01 3 164907600 164907600 C T SLITRK3 Missense_Mutation p.R340Q 0.47 deleterious(0.03) probably_damaging(0.994) TCGA-CN-A6V3-01 3 179311660 179311660 T C MRPL47 Silent p.L142L 0.44 TCGA-CN-A6V3-01 3 194167833 194167833 C T ATP13A3 Silent p.G440G 0.17 TCGA-CN-A6V3-01 3 194181535 194181535 C G ATP13A3 Missense_Mutation p.R26P 0.11 tolerated(0.21) benign(0.015) TCGA-CN-A6V3-01 3 40567297 40567297 C T ZNF621 5'UTR 0.35 TCGA-CN-A6V3-01 3 46307076 46307076 C T CCR3 Nonsense_Mutation p.R164* 0.18 TCGA-CN-A6V3-01 3 49412914 49412914 T A RHOA Missense_Mutation p.T37S 0.37 deleterious(0.02) benign(0.299) TCGA-CN-A6V3-01 3 51746762 51746762 G T GRM2 Missense_Mutation p.G242C 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-CN-A6V3-01 3 52556869 52556869 T A STAB1 Missense_Mutation p.C2275S 0.34 deleterious(0) probably_damaging(0.998) TCGA-CN-A6V3-01 3 56026129 56026129 C G ERC2 Missense_Mutation p.E737D 0.10 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 4 145567771 145567771 G A HHIP 5'UTR 0.32 TCGA-CN-A6V3-01 4 155156860 155156860 A T DCHS2 Missense_Mutation p.S2527T 0.16 tolerated(0.25) benign(0.218) TCGA-CN-A6V3-01 4 156849502 156849502 C - CTSO Frame_Shift_Del p.G306Efs*36 0.19 TCGA-CN-A6V3-01 4 16188493 16188493 C T TAPT1 Missense_Mutation p.A253T 0.10 tolerated(0.4) benign(0.124) TCGA-CN-A6V3-01 4 183714586 183714586 C A TENM3 Missense_Mutation p.T2254N 0.16 tolerated(0.62) benign(0) TCGA-CN-A6V3-01 4 186567895 186567895 T A SORBS2 Missense_Mutation p.K304I 0.26 deleterious(0) possibly_damaging(0.908) TCGA-CN-A6V3-01 4 20530616 20530616 G T SLIT2 Missense_Mutation p.D503Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 4 20619089 20619089 C T SLIT2 Silent p.I1388I 0.22 TCGA-CN-A6V3-01 4 42895299 42895299 A T GRXCR1 Missense_Mutation p.M6L 0.37 tolerated_low_confidence(1) benign(0) TCGA-CN-A6V3-01 4 55976567 55976568 CA - KDR Splice_Site p.X419_splice 0.17 TCGA-CN-A6V3-01 4 62894575 62894575 A T LPHN3 Missense_Mutation p.Y1065F 0.20 tolerated(0.5) benign(0.022) TCGA-CN-A6V3-01 4 71508279 71508279 A G ENAM Missense_Mutation p.Y379C 0.24 deleterious(0) probably_damaging(0.992) TCGA-CN-A6V3-01 4 71508287 71508287 G C ENAM Missense_Mutation p.A382P 0.23 tolerated(0.29) benign(0.015) TCGA-CN-A6V3-01 4 73013163 73013163 C G NPFFR2 Nonsense_Mutation p.Y401* 0.18 TCGA-CN-A6V3-01 4 76928538 76928538 C T CXCL9 Splice_Site p.X22_splice 0.24 TCGA-CN-A6V3-01 4 77082850 77082850 C A SCARB2 3'UTR 0.23 TCGA-CN-A6V3-01 4 79393380 79393380 A T FRAS1 Missense_Mutation p.D2473V 0.18 probably_damaging(0.995) TCGA-CN-A6V3-01 4 96761769 96761769 G T PDHA2 Missense_Mutation p.K156N 0.34 tolerated(0.06) benign(0.054) TCGA-CN-A6V3-01 5 110835647 110835647 C T STARD4 Silent p.A185A 0.41 TCGA-CN-A6V3-01 5 126753414 126753414 C T MEGF10 Silent p.Y405Y 0.43 TCGA-CN-A6V3-01 5 13716792 13716792 G T DNAH5 Missense_Mutation p.S4238Y 0.18 possibly_damaging(0.86) TCGA-CN-A6V3-01 5 140202609 140202609 G A PCDHA5 Missense_Mutation p.V417M 0.15 tolerated_low_confidence(0.09) benign(0.364) TCGA-CN-A6V3-01 5 140562409 140562409 G T PCDHB16 Missense_Mutation p.R92L 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-CN-A6V3-01 5 14419991 14419991 G T TRIO Silent p.R1688R 0.52 TCGA-CN-A6V3-01 5 169506071 169506071 G T DOCK2 Missense_Mutation p.R1696L 0.41 deleterious(0.01) benign(0.069) TCGA-CN-A6V3-01 5 176687152 176687152 G A NSD1 Missense_Mutation p.C1710Y 0.09 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 5 176696606 176696606 G T NSD1 Missense_Mutation p.W1769C 0.46 deleterious(0.01) probably_damaging(1) TCGA-CN-A6V3-01 5 179153693 179153693 A G CANX Missense_Mutation p.K553R 0.05 tolerated(0.38) benign(0.002) TCGA-CN-A6V3-01 5 23524474 23524474 C T PRDM9 Nonsense_Mutation p.Q328* 0.17 TCGA-CN-A6V3-01 5 34998817 34998817 G C AGXT2 3'UTR 0.38 TCGA-CN-A6V3-01 5 54420831 54420831 G C CDC20B Missense_Mutation p.H339D 0.09 deleterious(0) probably_damaging(0.941) TCGA-CN-A6V3-01 5 71495356 71495356 C A MAP1B Silent p.S2058S 0.13 TCGA-CN-A6V3-01 6 102130441 102130441 G T GRIK2 Missense_Mutation p.G246V 0.18 deleterious(0.01) possibly_damaging(0.891) TCGA-CN-A6V3-01 6 144758722 144758722 G C UTRN Missense_Mutation p.A361P 0.20 deleterious(0) probably_damaging(0.984) TCGA-CN-A6V3-01 6 146755275 146755275 G T GRM1 Missense_Mutation p.M976I 0.25 tolerated_low_confidence(0.48) benign(0.028) TCGA-CN-A6V3-01 6 152605242 152605242 C T SYNE1 Silent p.E6026E 0.13 TCGA-CN-A6V3-01 6 152652078 152652078 G T SYNE1 Missense_Mutation p.A4581E 0.26 possibly_damaging(0.849) TCGA-CN-A6V3-01 6 34741334 34741334 G T SNRPC Missense_Mutation p.R156L 0.31 deleterious_low_confidence(0) unknown(0) TCGA-CN-A6V3-01 6 35287469 35287469 T A DEF6 Splice_Site p.X461_splice 0.22 TCGA-CN-A6V3-01 6 36343668 36343668 C A ETV7 Missense_Mutation p.R96L 0.18 deleterious(0) probably_damaging(0.991) TCGA-CN-A6V3-01 6 44122659 44122659 C T TMEM63B 3'UTR 0.32 TCGA-CN-A6V3-01 6 49580134 49580134 A T RHAG Silent p.S307S 0.25 TCGA-CN-A6V3-01 6 56479240 56479240 T G DST Missense_Mutation p.K1121Q 0.20 benign(0.088) TCGA-CN-A6V3-01 6 69703851 69703851 C A BAI3 Silent p.V642V 0.22 TCGA-CN-A6V3-01 6 70909342 70909342 A T COL19A1 Missense_Mutation p.K1042M 0.26 deleterious(0) probably_damaging(0.923) TCGA-CN-A6V3-01 6 74063656 74063656 T A DPPA5 Missense_Mutation p.Y71F 0.19 tolerated(0.46) benign(0.063) TCGA-CN-A6V3-01 6 74063660 74063660 C T DPPA5 Missense_Mutation p.V70I 0.17 tolerated(0.28) possibly_damaging(0.896) TCGA-CN-A6V3-01 6 76751766 76751766 C A IMPG1 Nonsense_Mutation p.E49* 0.20 TCGA-CN-A6V3-01 6 83884177 83884177 C T PGM3 Silent p.K414K 0.10 TCGA-CN-A6V3-01 6 83905690 83905690 G C RWDD2A Missense_Mutation p.G193A 0.06 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 7 104758442 104758442 T G SRPK2 Missense_Mutation p.K648T 0.29 deleterious(0) probably_damaging(0.938) TCGA-CN-A6V3-01 7 119914645 119914645 G A KCND2 5'UTR 0.22 TCGA-CN-A6V3-01 7 119915441 119915441 C A KCND2 Missense_Mutation p.P252H 0.36 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 7 129989825 129989825 T C CPA5 Missense_Mutation p.W70R 0.24 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 7 141736654 141736654 C T MGAM Missense_Mutation p.S703F 0.23 tolerated(0.07) probably_damaging(0.938) TCGA-CN-A6V3-01 7 142149044 142149044 C T TRBV5-5 Missense_Mutation p.R76K 0.22 tolerated(1) benign(0.001) TCGA-CN-A6V3-01 7 143806861 143806861 C T OR2A2 Silent p.L62L 0.25 TCGA-CN-A6V3-01 7 15601535 15601535 A C AGMO 5'UTR 0.24 TCGA-CN-A6V3-01 7 29519927 29519927 A G CHN2 Silent p.T203T 0.14 TCGA-CN-A6V3-01 7 33134957 33134957 G A RP9 Silent p.H185H 0.16 TCGA-CN-A6V3-01 7 36447556 36447556 A G ANLN Missense_Mutation p.T363A 0.23 tolerated(0.59) benign(0.001) TCGA-CN-A6V3-01 7 37889890 37889890 G T NME8 Missense_Mutation p.V8F 0.20 deleterious(0.01) possibly_damaging(0.456) TCGA-CN-A6V3-01 7 50611616 50611616 G A DDC Silent p.I56I 0.21 TCGA-CN-A6V3-01 7 57188487 57188487 G T ZNF479 Missense_Mutation p.S212Y 0.12 tolerated(0.15) benign(0.021) TCGA-CN-A6V3-01 7 57188736 57188736 C A ZNF479 Missense_Mutation p.C129F 0.24 deleterious(0.03) benign(0.054) TCGA-CN-A6V3-01 7 64292517 64292517 A G ZNF138 Missense_Mutation p.I273M 0.25 tolerated(0.26) benign(0.139) TCGA-CN-A6V3-01 7 65160093 65160093 A T INTS4L2 RNA 0.35 TCGA-CN-A6V3-01 7 7516766 7516766 C T COL28A1 Missense_Mutation p.G404R 0.19 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 7 77006657 77006657 G T GSAP Missense_Mutation p.F209L 0.08 tolerated(0.23) probably_damaging(0.999) TCGA-CN-A6V3-01 7 87133567 87133567 G T ABCB1 Missense_Mutation p.R1279S 0.22 deleterious_low_confidence(0.01) benign(0.045) TCGA-CN-A6V3-01 7 88963711 88963711 C G ZNF804B Missense_Mutation p.S472C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 7 94539773 94539773 G T PPP1R9A Missense_Mutation p.L116F 0.20 deleterious(0.03) probably_damaging(0.988) TCGA-CN-A6V3-01 7 95221311 95221311 G T PDK4 Missense_Mutation p.T228K 0.23 tolerated(0.41) benign(0) TCGA-CN-A6V3-01 7 98988569 98988569 G T ARPC1B Missense_Mutation p.W185L 0.13 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 7 98995534 98995534 G A PDAP1 Silent p.I146I 0.29 TCGA-CN-A6V3-01 8 104955103 104955103 T C RIMS2 Missense_Mutation p.Y884H 0.26 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-CN-A6V3-01 8 110100014 110100014 G T TRHR Missense_Mutation p.W91C 0.15 deleterious(0) probably_damaging(0.976) TCGA-CN-A6V3-01 8 110451247 110451247 C G PKHD1L1 Missense_Mutation p.C1294W 0.09 deleterious(0) probably_damaging(0.995) TCGA-CN-A6V3-01 8 118147528 118147528 C A SLC30A8 5'Flank 0.51 TCGA-CN-A6V3-01 8 139144920 139144920 G T FAM135B Silent p.G1379G 0.18 TCGA-CN-A6V3-01 8 24324490 24324490 T A ADAM7 Missense_Mutation p.S190T 0.24 tolerated(0.64) benign(0.001) TCGA-CN-A6V3-01 8 55541215 55541215 G C RP1 Missense_Mutation p.W1591C 0.23 tolerated(0.06) benign(0.059) TCGA-CN-A6V3-01 8 63978645 63978645 G T TTPA Missense_Mutation p.P124T 0.26 deleterious(0.04) probably_damaging(0.909) TCGA-CN-A6V3-01 9 100973015 100973015 C T TBC1D2 Silent p.L532L 0.43 TCGA-CN-A6V3-01 9 101602387 101602387 C T GALNT12 Missense_Mutation p.P439L 0.11 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V3-01 9 116082637 116082637 C A WDR31 Silent p.T260T 0.15 TCGA-CN-A6V3-01 9 125282226 125282226 C G OR1J4 Missense_Mutation p.D269E 0.14 tolerated_low_confidence(0.21) benign(0.033) TCGA-CN-A6V3-01 9 12693999 12693999 G T TYRP1 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0.02) probably_damaging(0.943) TCGA-CN-A6V3-01 9 129958792 129958792 G A RALGPS1 Silent p.A359A 0.08 TCGA-CN-A6V3-01 9 131483930 131483930 C T ZDHHC12 Nonsense_Mutation p.W161* 0.15 TCGA-CN-A6V3-01 9 133738189 133738189 G T ABL1 Nonsense_Mutation p.E216* 0.39 TCGA-CN-A6V3-01 9 136522343 136522343 C G DBH Missense_Mutation p.R572G 0.22 deleterious(0.01) benign(0.246) TCGA-CN-A6V3-01 9 137726895 137726895 C A COL5A1 Missense_Mutation p.H1739N 0.11 unknown(0) TCGA-CN-A6V3-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.45 deleterious(0) probably_damaging(1) TCGA-CN-A6V3-01 9 32630414 32630414 C A TAF1L Missense_Mutation p.G1722W 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.816) TCGA-CN-A6V3-01 9 33113455 33113455 G C B4GALT1 Missense_Mutation p.S398R 0.05 deleterious(0.02) benign(0.131) TCGA-CN-A6V3-01 9 36170588 36170588 C T CCIN Silent p.I363I 0.22 TCGA-CN-A6V3-01 9 40774408 40774408 T A ZNF658 Missense_Mutation p.K289N 0.18 tolerated(0.1) benign(0.261) TCGA-CN-A6V3-01 9 71623436 71623436 C A PIP5K1B 3'UTR 0.25 TCGA-CN-A6V3-01 9 79959942 79959942 A T VPS13A Silent p.A2391A 0.35 TCGA-CN-A6V3-01 9 95165608 95165608 G T OGN Missense_Mutation p.R28S 0.43 tolerated(0.42) benign(0.009) TCGA-CN-A6V3-01 X 150912245 150912245 G A CNGA2 Missense_Mutation p.D424N 0.44 tolerated(0.14) probably_damaging(0.998) TCGA-CN-A6V3-01 X 153880551 153880551 A T CTAG2 Silent p.P208P 0.47 TCGA-CN-A6V3-01 X 32716089 32716089 A T DMD Nonsense_Mutation p.Y286* 0.50 TCGA-CN-A6V3-01 X 37027835 37027835 G T FAM47C Missense_Mutation p.R451L 0.49 tolerated_low_confidence(0.45) possibly_damaging(0.688) TCGA-CN-A6V3-01 X 41201809 41201809 T - DDX3X Frame_Shift_Del p.F116Lfs*105 0.32 TCGA-CN-A6V3-01 X 49066462 49066462 G T CACNA1F Silent p.I1554I 0.15 TCGA-CN-A6V3-01 X 62875463 62875463 A G ARHGEF9 Missense_Mutation p.L404P 0.11 deleterious(0) possibly_damaging(0.905) TCGA-CN-A6V3-01 X 73071032 73071032 G A XIST RNA 0.53 TCGA-CN-A6V3-01 X 91090570 91090570 G A PCDH11X Missense_Mutation p.A23T 0.56 deleterious(0) probably_damaging(0.93) TCGA-CN-A6V3-01 X 91090650 91090650 G T PCDH11X Missense_Mutation p.L49F 0.49 tolerated(0.06) probably_damaging(0.996) TCGA-CN-A6V3-01 X 99945602 99945602 T C SYTL4 Silent p.P225P 0.44 TCGA-CN-A6V6-01 10 129905282 129905282 C T MKI67 Missense_Mutation p.D1608N 0.13 tolerated(0.29) benign(0.167) TCGA-CN-A6V6-01 10 15760877 15760877 C T ITGA8 Silent p.A77A 0.22 TCGA-CN-A6V6-01 10 68040264 68040264 T C CTNNA3 Silent p.T616T 0.29 TCGA-CN-A6V6-01 10 70136632 70136632 T C RUFY2 Missense_Mutation p.I470V 0.26 tolerated(1) benign(0.002) TCGA-CN-A6V6-01 10 88717142 88717142 C T MMRN2 Missense_Mutation p.V53I 0.12 tolerated(0.41) benign(0.001) TCGA-CN-A6V6-01 11 26353815 26353815 G C ANO3 5'UTR 0.19 TCGA-CN-A6V6-01 11 57573390 57573390 T C CTNND1 Missense_Mutation p.S587P 0.23 deleterious(0) probably_damaging(0.955) TCGA-CN-A6V6-01 11 59245409 59245409 C T OR4D10 Silent p.C169C 0.30 TCGA-CN-A6V6-01 11 8161664 8161664 G T RIC3 Missense_Mutation p.F67L 0.27 tolerated(0.07) benign(0.041) TCGA-CN-A6V6-01 12 109316518 109316518 C A SVOP Silent p.L303L 0.12 TCGA-CN-A6V6-01 12 115120692 115120692 A G TBX3 Missense_Mutation p.V105A 0.43 deleterious(0.02) probably_damaging(1) TCGA-CN-A6V6-01 12 2622102 2622102 G A CACNA1C Missense_Mutation p.D448N 0.43 deleterious(0) probably_damaging(0.998) TCGA-CN-A6V6-01 12 49428219 49428219 G A KMT2D Missense_Mutation p.P3494L 0.27 probably_damaging(0.992) TCGA-CN-A6V6-01 12 59271321 59271321 C T LRIG3 Silent p.S799S 0.44 TCGA-CN-A6V6-01 12 6435720 6435720 C T PLEKHG6 Nonsense_Mutation p.Q551* 0.41 TCGA-CN-A6V6-01 12 6602125 6602125 C T MRPL51 Silent p.L31L 0.15 TCGA-CN-A6V6-01 12 8205475 8205475 G - FOXJ2 3'UTR 0.48 TCGA-CN-A6V6-01 12 93175725 93175725 C T EEA1 Splice_Site p.X1112_splice 0.37 TCGA-CN-A6V6-01 13 100992479 100992479 C T PCCA Nonsense_Mutation p.Q537* 0.18 TCGA-CN-A6V6-01 13 66878987 66878987 T C PCDH9 Missense_Mutation p.K1172E 0.19 deleterious(0.03) benign(0.007) TCGA-CN-A6V6-01 14 20528635 20528635 T C OR4L1 Silent p.F144F 0.34 TCGA-CN-A6V6-01 15 23812077 23812077 A G MKRN3 Missense_Mutation p.E383G 0.27 deleterious(0) possibly_damaging(0.82) TCGA-CN-A6V6-01 15 23932439 23932439 T C NDN 5'UTR 0.29 TCGA-CN-A6V6-01 15 23932440 23932440 G A NDN 5'UTR 0.29 TCGA-CN-A6V6-01 15 65490123 65490123 T C CILP Missense_Mutation p.Q834R 0.28 deleterious(0.04) benign(0.031) TCGA-CN-A6V6-01 15 69732777 69732777 G A KIF23 Missense_Mutation p.R673Q 0.13 deleterious(0.04) benign(0.397) TCGA-CN-A6V6-01 15 90378853 90378853 G A C15orf38-AP3S2 Missense_Mutation p.A360V 0.26 deleterious_low_confidence(0.04) benign(0.307) TCGA-CN-A6V6-01 16 53358431 53358431 C T CHD9 Missense_Mutation p.S2757F 0.20 unknown(0) TCGA-CN-A6V6-01 16 74908337 74908337 C T WDR59 Missense_Mutation p.G899S 0.24 tolerated(0.45) benign(0.421) TCGA-CN-A6V6-01 17 39580263 39580263 C T KRT37 Intron 0.16 TCGA-CN-A6V6-01 17 72759610 72759610 C T SLC9A3R1 Silent p.D236D 0.28 TCGA-CN-A6V6-01 17 74136183 74136183 C G FOXJ1 Silent p.R98R 0.27 TCGA-CN-A6V6-01 18 58038902 58038902 A T MC4R Silent p.A227A 0.06 TCGA-CN-A6V6-01 19 17927592 17927592 G A INSL3 3'UTR 0.46 TCGA-CN-A6V6-01 19 36362190 36362190 T C APLP1 Missense_Mutation p.L159S 0.26 tolerated(0.09) possibly_damaging(0.513) TCGA-CN-A6V6-01 19 3759729 3759729 C T APBA3 Silent p.T178T 0.22 TCGA-CN-A6V6-01 19 4117439 4117439 G A MAP2K2 Missense_Mutation p.S94L 0.33 deleterious(0) probably_damaging(0.916) TCGA-CN-A6V6-01 19 43023198 43023199 - T CEACAM1 Frame_Shift_Ins p.I383Nfs*15 0.21 TCGA-CN-A6V6-01 19 44680435 44680435 T C ZNF226 Silent p.C340C 0.16 TCGA-CN-A6V6-01 19 44933309 44933309 G A ZNF229 Silent p.C549C 0.43 TCGA-CN-A6V6-01 19 52222476 52222476 A G HAS1 Missense_Mutation p.S229P 0.11 deleterious(0) probably_damaging(0.918) TCGA-CN-A6V6-01 19 53740939 53740939 G T ZNF677 Nonsense_Mutation p.Y347* 0.20 TCGA-CN-A6V6-01 19 58579749 58579749 C A ZNF135 Missense_Mutation p.P657T 0.09 deleterious(0) probably_damaging(0.998) TCGA-CN-A6V6-01 1 115828652 115828652 G A NGF 3'UTR 0.15 TCGA-CN-A6V6-01 1 120337202 120337202 C T REG4 3'UTR 0.21 TCGA-CN-A6V6-01 1 156626137 156626137 G T BCAN Missense_Mutation p.R669L 0.07 tolerated(0.09) possibly_damaging(0.875) TCGA-CN-A6V6-01 1 15986468 15986468 T G RSC1A1 Silent p.A35A 0.18 TCGA-CN-A6V6-01 1 161276600 161276600 T C MPZ Missense_Mutation p.N116D 0.20 tolerated(0.07) benign(0.19) TCGA-CN-A6V6-01 1 162729614 162729614 G A DDR2 Missense_Mutation p.D234N 0.20 deleterious(0) probably_damaging(0.97) TCGA-CN-A6V6-01 1 171162507 171162507 C A FMO2 Missense_Mutation p.Q56K 0.21 tolerated(1) benign(0.006) TCGA-CN-A6V6-01 1 183212590 183212590 G A LAMC2 3'UTR 0.25 TCGA-CN-A6V6-01 1 207679361 207679361 C T CR1 Silent p.S78S 0.13 TCGA-CN-A6V6-01 1 233134030 233134030 C T PCNXL2 Missense_Mutation p.G1920R 0.18 tolerated(0.42) benign(0.001) TCGA-CN-A6V6-01 1 236735738 236735738 A G HEATR1 Missense_Mutation p.V1227A 0.06 deleterious(0) benign(0.201) TCGA-CN-A6V6-01 1 242511527 242511527 G A PLD5 Silent p.I69I 0.36 TCGA-CN-A6V6-01 1 247016551 247016551 C T AHCTF1 Missense_Mutation p.E1478K 0.28 tolerated(0.11) benign(0.014) TCGA-CN-A6V6-01 1 34011718 34011718 C A CSMD2 Missense_Mutation p.A2863S 0.11 tolerated(0.36) benign(0.232) TCGA-CN-A6V6-01 1 37941403 37941403 C G ZC3H12A Silent p.P102P 0.19 TCGA-CN-A6V6-01 22 27019317 27019317 G A CRYBA4 Splice_Site p.X53_splice 0.21 TCGA-CN-A6V6-01 22 36688149 36688151 GTC - MYH9 In_Frame_Del p.D1409del 0.11 TCGA-CN-A6V6-01 22 41568590 41568590 G A EP300 Missense_Mutation p.E1514K 0.31 probably_damaging(0.995) TCGA-CN-A6V6-01 2 109370370 109370370 G A RANBP2 Silent p.R715R 0.26 TCGA-CN-A6V6-01 2 131100505 131100505 G A IMP4 5'UTR 0.22 TCGA-CN-A6V6-01 2 141250225 141250225 C G LRP1B Missense_Mutation p.E3024D 0.30 benign(0.217) TCGA-CN-A6V6-01 2 179730506 179730506 G A CCDC141 Silent p.D904D 0.26 TCGA-CN-A6V6-01 2 182374442 182374442 C A ITGA4 Missense_Mutation p.P585T 0.24 tolerated(0.13) benign(0.069) TCGA-CN-A6V6-01 2 213914478 213914478 C T IKZF2 Missense_Mutation p.R178K 0.45 deleterious(0.02) probably_damaging(0.994) TCGA-CN-A6V6-01 2 48914844 48914844 C T LHCGR Missense_Mutation p.E698K 0.20 tolerated_low_confidence(0.08) benign(0.002) TCGA-CN-A6V6-01 3 127800067 127800067 T C RUVBL1 3'UTR 0.17 TCGA-CN-A6V6-01 3 141164305 141164305 C T ZBTB38 Silent p.L1025L 0.07 TCGA-CN-A6V6-01 3 160099295 160099295 A G IFT80 Silent p.S85S 0.13 TCGA-CN-A6V6-01 3 183882067 183882067 G A DVL3 Missense_Mutation p.E82K 0.10 deleterious(0.01) benign(0.278) TCGA-CN-A6V6-01 3 193120555 193120555 T C ATP13A4 Silent p.A1159A 0.19 TCGA-CN-A6V6-01 3 38022299 38022299 G A CTDSPL Missense_Mutation p.E258K 0.17 deleterious(0) probably_damaging(0.916) TCGA-CN-A6V6-01 4 113359744 113359744 G A ALPK1 Missense_Mutation p.R1098K 0.19 tolerated(0.09) benign(0.291) TCGA-CN-A6V6-01 4 162841615 162841615 G A FSTL5 Missense_Mutation p.A117V 0.24 deleterious(0) probably_damaging(0.971) TCGA-CN-A6V6-01 4 164087806 164087806 T C NAF1 Missense_Mutation p.E25G 0.23 tolerated_low_confidence(0.22) benign(0.018) TCGA-CN-A6V6-01 5 16465147 16465147 C A ZNF622 Intron 0.36 TCGA-CN-A6V6-01 5 17354576 17354576 C T CTD-2139B15.2 RNA 0.36 TCGA-CN-A6V6-01 5 666136 666136 G A TPPP Silent p.R138R 0.40 TCGA-CN-A6V6-01 5 6754886 6754886 C G PAPD7 Missense_Mutation p.S486C 0.12 deleterious_low_confidence(0.02) benign(0.376) TCGA-CN-A6V6-01 6 125379204 125379204 C T RNF217 Silent p.S119S 0.25 TCGA-CN-A6V6-01 6 128326338 128326338 C T PTPRK Missense_Mutation p.M795I 0.25 tolerated(0.12) possibly_damaging(0.758) TCGA-CN-A6V6-01 6 132201045 132201045 A T ENPP1 Missense_Mutation p.L657F 0.46 deleterious(0.01) possibly_damaging(0.482) TCGA-CN-A6V6-01 6 161575173 161575173 C T AGPAT4 Intron 0.49 TCGA-CN-A6V6-01 6 407527 407527 G A IRF4 Missense_Mutation p.D429N 0.67 tolerated(0.1) possibly_damaging(0.586) TCGA-CN-A6V6-01 6 75898158 75898158 A G COL12A1 Missense_Mutation p.V306A 0.05 probably_damaging(0.996) TCGA-CN-A6V6-01 7 122338834 122338834 G A RNF133 Missense_Mutation p.H47Y 0.09 tolerated(0.36) benign(0.005) TCGA-CN-A6V6-01 7 22767071 22767071 G A IL6 Missense_Mutation p.G10S 0.27 tolerated(1) benign(0) TCGA-CN-A6V6-01 7 99758242 99758242 T C GAL3ST4 Missense_Mutation p.N257S 0.29 tolerated(0.28) benign(0.004) TCGA-CN-A6V6-01 8 144240241 144240255 GGACACTGGCACACA - LY6H In_Frame_Del p.V72_R77delinsG 0.24 TCGA-CN-A6V6-01 9 105757679 105757679 T C CYLC2 Missense_Mutation p.F6S 0.44 deleterious(0.02) benign(0.29) TCGA-CN-A6V6-01 9 123367875 123367875 T C MEGF9 Missense_Mutation p.N468D 0.62 deleterious(0) possibly_damaging(0.661) TCGA-CN-A6V6-01 9 131010933 131010933 G C DNM1 Silent p.V659V 0.08 TCGA-CN-A6V6-01 X 106844000 106844000 G A FRMPD3 Missense_Mutation p.E944K 0.28 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-CN-A6V6-01 X 19984742 19984742 C T CXorf23 Missense_Mutation p.A23T 0.56 tolerated(1) benign(0.001) TCGA-CN-A6V6-01 X 37641386 37641386 C T CYBB Missense_Mutation p.R31W 0.52 tolerated(0.1) benign(0) TCGA-CN-A6V6-01 X 64141701 64141701 T C ZC4H2 Missense_Mutation p.N74S 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-CN-A6V6-01 X 66943631 66943631 T C AR Missense_Mutation p.V904A 0.05 deleterious(0) probably_damaging(0.998) TCGA-CN-A6V6-01 X 69454507 69454508 TG - AWAT1 5'UTR 0.12 TCGA-CN-A6V7-01 10 135203152 135203152 G A PAOX Silent p.P431P 0.60 TCGA-CN-A6V7-01 10 14870234 14870234 C T CDNF Silent p.L51L 0.48 TCGA-CN-A6V7-01 10 27324646 27324646 C T ANKRD26 Silent p.S911S 0.37 TCGA-CN-A6V7-01 10 28413037 28413037 G A MPP7 Missense_Mutation p.H180Y 0.42 deleterious(0) probably_damaging(0.934) TCGA-CN-A6V7-01 10 28905158 28905158 C G WAC Nonsense_Mutation p.S538* 0.39 TCGA-CN-A6V7-01 11 110035143 110035143 G C ZC3H12C Missense_Mutation p.D445H 0.70 deleterious(0) probably_damaging(0.999) TCGA-CN-A6V7-01 11 48347444 48347444 G A OR4C3 Missense_Mutation p.E318K 0.11 deleterious(0) possibly_damaging(0.794) TCGA-CN-A6V7-01 11 55135357 55135357 G A OR4A15 5'Flank 0.27 TCGA-CN-A6V7-01 11 55735317 55735317 G T OR10AG1 Missense_Mutation p.S208Y 0.38 deleterious(0.01) probably_damaging(0.929) TCGA-CN-A6V7-01 11 66281968 66281968 C T BBS1 Missense_Mutation p.A84V 0.39 deleterious(0.02) benign(0.109) TCGA-CN-A6V7-01 11 66625196 66625196 C T LRFN4 5'UTR 0.35 TCGA-CN-A6V7-01 11 9549107 9549107 A G ZNF143 Missense_Mutation p.I622V 0.41 deleterious(0) benign(0.354) TCGA-CN-A6V7-01 12 99640250 99640250 C T ANKS1B Missense_Mutation p.G717R 0.40 deleterious(0) probably_damaging(0.995) TCGA-CN-A6V7-01 15 71174804 71174804 C T THAP10 Missense_Mutation p.E255K 0.44 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-CN-A6V7-01 15 73575381 73575381 C T NEO1 Silent p.G1113G 0.37 TCGA-CN-A6V7-01 15 76496741 76496741 C T C15orf27 3'UTR 0.38 TCGA-CN-A6V7-01 15 89422472 89422472 G A HAPLN3 Silent p.N174N 0.42 TCGA-CN-A6V7-01 16 2150560 2150560 C T PKD1 Silent p.T3135T 0.42 TCGA-CN-A6V7-01 16 32077597 32077597 C G IGHV3OR16-9 Missense_Mutation p.S71C 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CN-A6V7-01 16 46731384 46731384 G A ORC6 Missense_Mutation p.E216K 0.53 tolerated(0.73) benign(0.001) TCGA-CN-A6V7-01 17 74072784 74072784 A G GALR2 Missense_Mutation p.I146V 0.43 tolerated(0.63) benign(0.401) TCGA-CN-A6V7-01 17 78355400 78355400 G C RNF213 Missense_Mutation p.Q4617H 0.37 benign(0.022) TCGA-CN-A6V7-01 17 79892829 79892829 C T PYCR1 Silent p.T171T 0.37 TCGA-CN-A6V7-01 19 11728051 11728051 C T ZNF627 Missense_Mutation p.H245Y 0.18 deleterious(0) probably_damaging(0.964) TCGA-CN-A6V7-01 19 44096355 44096355 G A IRGQ Silent p.G565G 0.23 TCGA-CN-A6V7-01 19 44103432 44103432 G A ZNF576 3'UTR 0.27 TCGA-CN-A6V7-01 19 56244284 56244284 A G NLRP9 Missense_Mutation p.S305P 0.44 tolerated(0.16) possibly_damaging(0.683) TCGA-CN-A6V7-01 1 156035757 156035757 G A RAB25 Silent p.T33T 0.44 TCGA-CN-A6V7-01 1 157504594 157504594 C G FCRL5 Missense_Mutation p.Q497H 0.48 tolerated(0.2) benign(0.12) TCGA-CN-A6V7-01 1 160099958 160099958 C T ATP1A2 Missense_Mutation p.R510C 0.07 deleterious(0) probably_damaging(0.992) TCGA-CN-A6V7-01 1 241761296 241761296 G A OPN3 Missense_Mutation p.R233C 0.46 deleterious(0) probably_damaging(0.973) TCGA-CN-A6V7-01 1 32205964 32205964 G A BAI2 Missense_Mutation p.S658L 0.55 deleterious(0.02) possibly_damaging(0.813) TCGA-CN-A6V7-01 1 46656424 46656424 C T POMGNT1 Silent p.T524T 0.10 TCGA-CN-A6V7-01 1 8074604 8074604 C T ERRFI1 Intron 0.62 TCGA-CN-A6V7-01 20 39316685 39316685 T C MAFB Missense_Mutation p.E269G 0.53 deleterious(0) possibly_damaging(0.5) TCGA-CN-A6V7-01 21 27354743 27354743 C T APP Missense_Mutation p.E380K 0.39 deleterious(0) probably_damaging(0.964) TCGA-CN-A6V7-01 21 31538328 31538328 C T CLDN17 Missense_Mutation p.R203H 0.42 tolerated(0.63) benign(0) TCGA-CN-A6V7-01 21 38308959 38308959 T C HLCS Silent p.A262A 0.42 TCGA-CN-A6V7-01 22 16448940 16448940 C T OR11H1 Missense_Mutation p.E289K 0.35 deleterious(0) benign(0.004) TCGA-CN-A6V7-01 2 10803140 10803140 G A NOL10 Nonsense_Mutation p.R208* 0.41 TCGA-CN-A6V7-01 2 175213374 175213374 C G CIR1 Missense_Mutation p.E402Q 0.45 tolerated_low_confidence(0.24) possibly_damaging(0.682) TCGA-CN-A6V7-01 2 179468696 179468696 C T TTN Missense_Mutation p.V18240I 0.42 TCGA-CN-A6V7-01 2 233346260 233346260 A G ECEL1 Missense_Mutation p.C649R 0.38 deleterious(0) possibly_damaging(0.743) TCGA-CN-A6V7-01 2 27803325 27803325 C T C2orf16 Nonsense_Mutation p.R1296* 0.37 TCGA-CN-A6V7-01 3 147128361 147128361 G A ZIC1 Silent p.A154A 0.13 TCGA-CN-A6V7-01 3 64084813 64084813 C T PRICKLE2 Missense_Mutation p.G817S 0.84 tolerated(0.58) benign(0.044) TCGA-CN-A6V7-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.90 deleterious(0) probably_damaging(1) TCGA-CN-A6V7-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.43 deleterious(0.01) possibly_damaging(0.594) TCGA-CN-A6V7-01 4 44724233 44724233 C T GNPDA2 5'UTR 0.44 TCGA-CN-A6V7-01 5 112884355 112884355 C T YTHDC2 Missense_Mutation p.S538L 0.51 deleterious(0.01) benign(0.292) TCGA-CN-A6V7-01 5 156592869 156592869 C T FAM71B Missense_Mutation p.R104Q 0.19 tolerated(0.88) benign(0.004) TCGA-CN-A6V7-01 5 178358599 178358599 G A ZFP2 Missense_Mutation p.M95I 0.50 tolerated(1) benign(0) TCGA-CN-A6V7-01 6 139487755 139487755 G C HECA Missense_Mutation p.K202N 0.60 deleterious(0) probably_damaging(0.996) TCGA-CN-A6V7-01 6 139487785 139487785 G T HECA Silent p.G212G 0.65 TCGA-CN-A6V7-01 6 153365075 153365077 TGT - RGS17 In_Frame_Del p.N26del 0.28 TCGA-CN-A6V7-01 6 155145426 155145426 C A SCAF8 Nonsense_Mutation p.S662* 0.56 TCGA-CN-A6V7-01 6 33281027 33281027 G A TAPBP Nonsense_Mutation p.Q146* 0.09 TCGA-CN-A6V7-01 6 50786670 50786670 C T TFAP2B Silent p.Y22Y 0.47 TCGA-CN-A6V7-01 6 51908510 51908510 C T PKHD1 Missense_Mutation p.D912N 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-CN-A6V7-01 7 82474651 82474651 G A PCLO Missense_Mutation p.S4661F 0.36 unknown(0) TCGA-CN-A6V7-01 7 88423687 88423687 T G C7orf62 Missense_Mutation p.K190N 0.44 deleterious(0) probably_damaging(0.994) TCGA-CN-A6V7-01 7 98453743 98453743 G A TMEM130 Silent p.T205T 0.25 TCGA-CN-A6V7-01 8 41555570 41555570 C T ANK1 Silent p.E917E 0.44 TCGA-CN-A6V7-01 9 136536697 136536697 G A SARDH Silent p.N762N 0.62 TCGA-CQ-5323-01 10 105146990 105146990 G T TAF5 Missense_Mutation p.V630L 0.34 deleterious(0) possibly_damaging(0.856) TCGA-CQ-5323-01 10 124186509 124186509 A G PLEKHA1 Missense_Mutation p.I288V 0.33 tolerated(0.29) possibly_damaging(0.722) TCGA-CQ-5323-01 10 134008356 134008356 C T DPYSL4 Silent p.H107H 0.26 TCGA-CQ-5323-01 10 27687277 27687277 G A PTCHD3 Silent p.F750F 0.13 TCGA-CQ-5323-01 10 29581596 29581596 C T LYZL1 Silent p.V142V 0.21 TCGA-CQ-5323-01 10 34671799 34671808 ATGGAACCAA - PARD3 Frame_Shift_Del p.I353Mfs*39 0.38 TCGA-CQ-5323-01 10 70405630 70405630 C A TET1 Nonsense_Mutation p.C1048* 0.19 TCGA-CQ-5323-01 10 86131078 86131078 T C CCSER2 Silent p.D90D 0.06 TCGA-CQ-5323-01 11 1309866 1309866 G A TOLLIP Silent p.V169V 0.33 TCGA-CQ-5323-01 11 21594899 21594899 C G NELL1 Missense_Mutation p.L776V 0.08 tolerated(0.08) possibly_damaging(0.622) TCGA-CQ-5323-01 11 65623573 65623573 G A CFL1 Silent p.I48I 0.08 TCGA-CQ-5323-01 11 65623576 65623576 G A CFL1 Silent p.I47I 0.06 TCGA-CQ-5323-01 12 49447022 49447022 C A KMT2D Nonsense_Mutation p.E308* 0.21 TCGA-CQ-5323-01 12 52911893 52911894 - A KRT5 Frame_Shift_Ins p.K276Efs*19 0.26 TCGA-CQ-5323-01 12 7636068 7636069 - A CD163 Frame_Shift_Ins p.E995* 0.20 TCGA-CQ-5323-01 12 9349218 9349218 C G PZP Missense_Mutation p.G311R 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-CQ-5323-01 13 37014297 37014297 G A CCNA1 Missense_Mutation p.V359I 0.53 tolerated(0.28) benign(0.003) TCGA-CQ-5323-01 14 52164840 52164840 C T FRMD6 Intron 0.17 TCGA-CQ-5323-01 15 40758306 40758306 C T BAHD1 Missense_Mutation p.R774C 0.23 deleterious(0) probably_damaging(0.998) TCGA-CQ-5323-01 15 80412738 80412738 T G ZFAND6 Missense_Mutation p.C18G 0.33 deleterious(0) probably_damaging(1) TCGA-CQ-5323-01 16 70891747 70891747 A T HYDIN Missense_Mutation p.H4052Q 0.22 possibly_damaging(0.767) TCGA-CQ-5323-01 17 11725866 11725866 G C DNAH9 Missense_Mutation p.A2988P 0.04 possibly_damaging(0.866) TCGA-CQ-5323-01 17 57125153 57125153 G A TRIM37 Silent p.L520L 0.08 TCGA-CQ-5323-01 17 6599181 6599181 G T SLC13A5 Silent p.R307R 0.14 TCGA-CQ-5323-01 18 74611013 74611013 T A ZNF236 Missense_Mutation p.F575I 0.07 deleterious(0) probably_damaging(0.93) TCGA-CQ-5323-01 19 42728645 42728645 G A ZNF526 Missense_Mutation p.M30I 0.05 tolerated_low_confidence(0.45) benign(0) TCGA-CQ-5323-01 19 53959551 53959551 A G ZNF761 RNA 0.28 TCGA-CQ-5323-01 1 211652474 211652474 G A RD3 Silent p.S164S 0.38 TCGA-CQ-5323-01 1 232162197 232162197 C T DISC1 Missense_Mutation p.S775F 0.36 deleterious(0.02) probably_damaging(0.952) TCGA-CQ-5323-01 1 32800482 32800482 C T MARCKSL1 Missense_Mutation p.G102S 0.05 tolerated(0.08) probably_damaging(0.983) TCGA-CQ-5323-01 1 37337839 37337839 G A GRIK3 Missense_Mutation p.R228C 0.39 tolerated(0.11) benign(0.009) TCGA-CQ-5323-01 21 33063194 33063194 A - SCAF4 Frame_Shift_Del p.Y601Ifs*75 0.22 TCGA-CQ-5323-01 22 18975325 18975325 G A DGCR5 RNA 0.27 TCGA-CQ-5323-01 22 30688485 30688498 ACATGCTGTGGGGG - TBC1D10A Frame_Shift_Del p.P472Afs*35 0.14 TCGA-CQ-5323-01 22 38119916 38119916 C T TRIOBP Silent p.P451P 0.12 TCGA-CQ-5323-01 22 40817050 40817050 C A MKL1 Nonsense_Mutation p.E228* 0.07 TCGA-CQ-5323-01 22 41173340 41173340 C T SLC25A17 Silent p.S163S 0.33 TCGA-CQ-5323-01 22 50903692 50903692 G T SBF1 Nonsense_Mutation p.C385* 0.33 TCGA-CQ-5323-01 2 116534856 116534856 G A DPP10 Missense_Mutation p.D436N 0.21 tolerated(0.25) benign(0.017) TCGA-CQ-5323-01 2 128409269 128409270 - C GPR17 Frame_Shift_Ins p.S351Qfs*31 0.29 TCGA-CQ-5323-01 2 178682613 178682613 A G PDE11A Missense_Mutation p.F539S 0.14 deleterious(0) probably_damaging(0.989) TCGA-CQ-5323-01 2 198636708 198636708 T G BOLL Splice_Site p.X130_splice 0.15 TCGA-CQ-5323-01 2 27728586 27728586 C T GCKR Missense_Mutation p.P251L 0.14 deleterious(0) probably_damaging(0.989) TCGA-CQ-5323-01 3 112719774 112719774 C T GTPBP8 3'UTR 0.19 TCGA-CQ-5323-01 3 113331029 113331029 C T SIDT1 Missense_Mutation p.R652C 0.07 deleterious(0.03) probably_damaging(0.982) TCGA-CQ-5323-01 3 113723577 113723577 G C KIAA1407 Missense_Mutation p.P629A 0.12 tolerated(0.07) benign(0.392) TCGA-CQ-5323-01 3 129251571 129251571 G A RHO Missense_Mutation p.A298T 0.06 deleterious(0) benign(0.064) TCGA-CQ-5323-01 3 178543544 178543544 G A KCNMB2 Silent p.Q75Q 0.15 TCGA-CQ-5323-01 3 195792459 195792459 T C TFRC Silent p.G351G 0.09 TCGA-CQ-5323-01 3 40085595 40085595 G A MYRIP Silent p.K55K 0.11 TCGA-CQ-5323-01 3 42659092 42659092 A G NKTR Missense_Mutation p.D30G 0.16 deleterious_low_confidence(0) unknown(0) TCGA-CQ-5323-01 3 47044464 47044464 G A NBEAL2 Missense_Mutation p.R1826H 0.42 tolerated(1) benign(0) TCGA-CQ-5323-01 3 8671370 8671370 C G SSUH2 Missense_Mutation p.G190R 0.16 tolerated(0.16) possibly_damaging(0.881) TCGA-CQ-5323-01 4 151336690 151336690 T - LRBA Frame_Shift_Del p.N2376Ifs*6 0.16 TCGA-CQ-5323-01 5 140626678 140626678 G T PCDHB15 Missense_Mutation p.G511V 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-CQ-5323-01 5 176295646 176295646 A G UNC5A Missense_Mutation p.E174G 0.21 deleterious(0) probably_damaging(0.992) TCGA-CQ-5323-01 5 38370498 38370498 G A EGFLAM Missense_Mutation p.V216M 0.16 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-CQ-5323-01 5 52235492 52235492 A G ITGA1 Missense_Mutation p.T1051A 0.43 tolerated(0.32) benign(0.01) TCGA-CQ-5323-01 6 110106193 110106193 C T FIG4 Missense_Mutation p.P637L 0.10 tolerated(0.27) benign(0.003) TCGA-CQ-5323-01 6 31734251 31734251 C T VWA7 Missense_Mutation p.V725I 0.67 tolerated(0.07) benign(0.057) TCGA-CQ-5323-01 6 46977694 46977694 C T GPR110 Missense_Mutation p.V493I 0.09 tolerated(0.34) benign(0) TCGA-CQ-5323-01 7 122634844 122634844 G A TAS2R16 Missense_Mutation p.T282M 0.19 deleterious(0.02) probably_damaging(0.967) TCGA-CQ-5323-01 7 141766419 141766419 G A MGAM Intron 0.15 TCGA-CQ-5323-01 7 57187579 57187579 G A ZNF479 Missense_Mutation p.H515Y 0.19 deleterious(0.04) possibly_damaging(0.625) TCGA-CQ-5323-01 7 99097569 99097569 C T ZNF394 Missense_Mutation p.E50K 0.10 tolerated(0.25) benign(0.028) TCGA-CQ-5323-01 8 109462084 109462084 G T EMC2 Nonsense_Mutation p.E25* 0.05 TCGA-CQ-5323-01 8 110447468 110447468 C T PKHD1L1 Silent p.P1130P 0.38 TCGA-CQ-5323-01 8 2976061 2976061 T C CSMD1 Missense_Mutation p.Y2097C 0.28 possibly_damaging(0.729) TCGA-CQ-5323-01 9 100389888 100389888 A T TSTD2 5'UTR 0.11 TCGA-CQ-5323-01 9 101470780 101470780 G A GABBR2 Silent p.A80A 0.58 TCGA-CQ-5323-01 9 121930087 121930087 G A BRINP1 Missense_Mutation p.R521C 0.43 deleterious(0) probably_damaging(0.973) TCGA-CQ-5323-01 9 132740855 132740855 G A FNBP1 Silent p.N78N 0.12 TCGA-CQ-5323-01 9 133907471 133907471 C T LAMC3 Missense_Mutation p.R240W 0.07 deleterious(0) probably_damaging(0.999) TCGA-CQ-5323-01 9 27949442 27949442 G T LINGO2 Missense_Mutation p.P410T 0.14 deleterious(0) probably_damaging(0.999) TCGA-CQ-5323-01 9 37015016 37015016 G A PAX5 Missense_Mutation p.P130S 0.06 deleterious(0.02) probably_damaging(0.996) TCGA-CQ-5323-01 9 88193977 88193977 G A AGTPBP1 Missense_Mutation p.A1027V 0.52 deleterious(0.02) benign(0.022) TCGA-CQ-5323-01 9 94486331 94486331 C T ROR2 Silent p.P815P 0.09 TCGA-CQ-5323-01 9 95609543 95609543 G T ZNF484 Nonsense_Mutation p.S511* 0.24 TCGA-CQ-5323-01 X 125686669 125686669 C T DCAF12L1 5'UTR 0.44 TCGA-CQ-5323-01 X 53239931 53239931 C A KDM5C Missense_Mutation p.V504L 0.09 deleterious(0) probably_damaging(0.978) TCGA-CQ-5323-01 Y 7235438 7235438 C T PRKY RNA 0.29 TCGA-CQ-5324-01 10 97817643 97817643 A G CCNJ Missense_Mutation p.Q266R 0.64 tolerated(0.14) benign(0.135) TCGA-CQ-5324-01 11 22276979 22276979 G C ANO5 Missense_Mutation p.V415L 0.37 deleterious(0.01) possibly_damaging(0.688) TCGA-CQ-5324-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.63 deleterious(0.02) probably_damaging(0.989) TCGA-CQ-5324-01 11 534291 534291 G T HRAS Missense_Mutation p.A11D 0.61 tolerated(0.42) benign(0.06) TCGA-CQ-5324-01 11 63668102 63668102 G A MARK2 Silent p.L280L 0.34 TCGA-CQ-5324-01 11 6593070 6593070 T A DNHD1 Missense_Mutation p.S4706T 0.20 possibly_damaging(0.761) TCGA-CQ-5324-01 12 43826253 43826253 C T ADAMTS20 Missense_Mutation p.G984R 0.34 tolerated(0.39) benign(0.016) TCGA-CQ-5324-01 12 57601972 57601972 A G LRP1 Missense_Mutation p.H4004R 0.39 probably_damaging(0.91) TCGA-CQ-5324-01 12 80707395 80707395 G A OTOGL Missense_Mutation p.R1188K 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-CQ-5324-01 13 114304774 114304774 G A ATP4B Missense_Mutation p.P221S 0.38 tolerated(0.34) benign(0.011) TCGA-CQ-5324-01 13 28771372 28771372 A T PAN3 Silent p.G247G 0.36 TCGA-CQ-5324-01 14 21499180 21499180 C T TPPP2 Silent p.N61N 0.33 TCGA-CQ-5324-01 14 24709835 24709835 G A TINF2 Missense_Mutation p.T284I 0.35 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-CQ-5324-01 15 43720231 43720231 C T TP53BP1 Missense_Mutation p.E1271K 0.30 deleterious(0) probably_damaging(0.911) TCGA-CQ-5324-01 15 85230875 85230875 C G SEC11A Missense_Mutation p.V98L 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-CQ-5324-01 16 1265063 1265063 G A CACNA1H Missense_Mutation p.R1674H 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-CQ-5324-01 16 2546268 2546268 G A RP11-20I23.1 Missense_Mutation p.R40H 0.28 deleterious(0) probably_damaging(1) TCGA-CQ-5324-01 16 9943686 9943686 C T GRIN2A Missense_Mutation p.V419M 0.36 deleterious(0) probably_damaging(0.999) TCGA-CQ-5324-01 17 27067575 27067575 C G NEK8 Missense_Mutation p.I504M 0.42 tolerated(0.14) benign(0.256) TCGA-CQ-5324-01 17 29657375 29657375 C T NF1 Nonsense_Mutation p.Q1891* 0.06 TCGA-CQ-5324-01 17 45663002 45663002 A G NPEPPS Missense_Mutation p.D262G 0.30 deleterious(0.01) benign(0.232) TCGA-CQ-5324-01 17 58257980 58257980 C T USP32 Missense_Mutation p.G1523S 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-CQ-5324-01 18 55711935 55711935 G A NEDD4L Missense_Mutation p.D15N 0.16 tolerated(0.17) benign(0.006) TCGA-CQ-5324-01 19 37130912 37130912 G T ZNF461 Missense_Mutation p.S112Y 0.12 tolerated(0.28) benign(0.055) TCGA-CQ-5324-01 19 41268965 41268965 C T SNRPA Missense_Mutation p.P196S 0.20 tolerated(0.22) benign(0.001) TCGA-CQ-5324-01 19 42563637 42563637 G C GRIK5 Missense_Mutation p.S184C 0.15 tolerated(0.14) probably_damaging(0.993) TCGA-CQ-5324-01 19 45774927 45774927 C T MARK4 Silent p.L249L 0.61 TCGA-CQ-5324-01 19 53643919 53643919 C A ZNF347 Missense_Mutation p.R722L 0.19 tolerated(0.12) benign(0.035) TCGA-CQ-5324-01 19 56203254 56203254 C T EPN1 Silent p.P385P 0.21 TCGA-CQ-5324-01 19 57743501 57743501 G A AURKC Missense_Mutation p.V69M 0.53 deleterious(0.03) possibly_damaging(0.718) TCGA-CQ-5324-01 1 154516537 154516537 C T TDRD10 Missense_Mutation p.T201M 0.36 deleterious(0) probably_damaging(1) TCGA-CQ-5324-01 1 16559457 16559457 G A RSG1 Silent p.V107V 0.26 TCGA-CQ-5324-01 1 19596120 19596120 G A AKR7L Intron 0.31 TCGA-CQ-5324-01 1 22150740 22150740 C T LDLRAD2 3'UTR 0.32 TCGA-CQ-5324-01 1 27682188 27682188 G A MAP3K6 Nonsense_Mutation p.R1254* 0.12 TCGA-CQ-5324-01 1 43166568 43166568 A G YBX1 Missense_Mutation p.N286S 0.26 tolerated(0.17) benign(0.112) TCGA-CQ-5324-01 20 25239873 25239873 C T PYGB Missense_Mutation p.R82C 0.26 deleterious(0) probably_damaging(0.996) TCGA-CQ-5324-01 20 3684688 3684688 G A SIGLEC1 Missense_Mutation p.L253F 0.30 tolerated(0.22) benign(0.078) TCGA-CQ-5324-01 20 44439538 44439538 C T DNTTIP1 Silent p.I270I 0.33 TCGA-CQ-5324-01 20 5169814 5169814 A C CDS2 Missense_Mutation p.K361N 0.32 deleterious(0) probably_damaging(1) TCGA-CQ-5324-01 21 32639127 32639127 C G TIAM1 Silent p.V54V 0.23 TCGA-CQ-5324-01 21 32639148 32639148 C T TIAM1 Silent p.V47V 0.18 TCGA-CQ-5324-01 21 38538338 38538338 C G TTC3 Silent p.V1274V 0.35 TCGA-CQ-5324-01 22 17072531 17072531 G A CCT8L2 Missense_Mutation p.L304F 0.39 deleterious(0) probably_damaging(0.973) TCGA-CQ-5324-01 22 30891410 30891410 G A SEC14L4 Missense_Mutation p.S85L 0.35 deleterious(0.02) probably_damaging(0.944) TCGA-CQ-5324-01 22 40080509 40080509 G A CACNA1I Intron 0.43 TCGA-CQ-5324-01 22 45607844 45607844 C T KIAA0930 Missense_Mutation p.G75E 0.33 tolerated(0.11) benign(0.035) TCGA-CQ-5324-01 2 15557650 15557650 C A NBAS Splice_Site p.X921_splice 0.40 TCGA-CQ-5324-01 2 178098956 178098956 A T NFE2L2 Missense_Mutation p.L30H 0.54 deleterious(0) probably_damaging(1) TCGA-CQ-5324-01 2 202131240 202131240 G A CASP8 Missense_Mutation p.G70R 0.65 tolerated(0.14) benign(0.132) TCGA-CQ-5324-01 2 202509991 202509991 T A MPP4 Missense_Mutation p.Q619L 0.71 deleterious(0) probably_damaging(0.947) TCGA-CQ-5324-01 2 208631681 208631681 G A FZD5 3'UTR 0.66 TCGA-CQ-5324-01 2 24471709 24471710 - T ITSN2 Frame_Shift_Ins p.P1055Tfs*2 0.22 TCGA-CQ-5324-01 2 75116479 75116479 G A HK2 Missense_Mutation p.R828Q 0.34 tolerated(0.26) benign(0.288) TCGA-CQ-5324-01 3 132423041 132423041 C T NPHP3 Splice_Site p.X508_splice 0.36 TCGA-CQ-5324-01 3 172003763 172003763 G A FNDC3B Missense_Mutation p.E280K 0.31 tolerated(0.56) benign(0.324) TCGA-CQ-5324-01 3 47163754 47163754 G C SETD2 Nonsense_Mutation p.S791* 0.32 TCGA-CQ-5324-01 4 139980327 139980327 T - ELF2 Frame_Shift_Del p.K519Rfs*18 0.28 TCGA-CQ-5324-01 4 187171481 187171481 G A KLKB1 Missense_Mutation p.R228Q 0.28 tolerated(0.73) benign(0.1) TCGA-CQ-5324-01 4 69696413 69696413 G A UGT2B10 Missense_Mutation p.R468H 0.38 deleterious(0.04) benign(0.126) TCGA-CQ-5324-01 5 149901143 149901143 C T NDST1 Silent p.F109F 0.24 TCGA-CQ-5324-01 5 153149755 153149755 A T GRIA1 Missense_Mutation p.M694L 0.33 deleterious(0.02) probably_damaging(0.98) TCGA-CQ-5324-01 5 35955843 35955843 C T UGT3A1 Missense_Mutation p.R400Q 0.30 tolerated(0.08) benign(0.354) TCGA-CQ-5324-01 5 45262411 45262411 G A HCN1 Missense_Mutation p.T762M 0.28 tolerated_low_confidence(0.08) benign(0.212) TCGA-CQ-5324-01 5 68682287 68682287 A G RAD17 Missense_Mutation p.N308D 0.33 tolerated(0.21) benign(0.009) TCGA-CQ-5324-01 5 75991296 75991296 G A IQGAP2 Silent p.T1337T 0.29 TCGA-CQ-5324-01 5 90670932 90670932 G A ARRDC3 Missense_Mutation p.A226V 0.34 deleterious(0.04) possibly_damaging(0.856) TCGA-CQ-5324-01 6 150005729 150005729 C T LATS1 Splice_Site p.X166_splice 0.33 TCGA-CQ-5324-01 6 31323136 31323137 - ATGG HLA-B Frame_Shift_Ins p.V285Pfs*5 0.26 TCGA-CQ-5324-01 6 32714066 32714066 C T HLA-DQA2 Silent p.C221C 0.33 TCGA-CQ-5324-01 6 43306213 43306213 C A ZNF318 Missense_Mutation p.L1841F 0.42 benign(0.066) TCGA-CQ-5324-01 6 47846396 47846396 G A PTCHD4 Silent p.H728H 0.40 TCGA-CQ-5324-01 6 56496014 56496017 TATG - DST Frame_Shift_Del p.Y841* 0.31 TCGA-CQ-5324-01 6 56496801 56496802 AG - DST Frame_Shift_Del p.S744* 0.30 TCGA-CQ-5324-01 6 7601664 7601664 G A SNRNP48 Missense_Mutation p.V168I 0.39 deleterious(0.02) possibly_damaging(0.697) TCGA-CQ-5324-01 6 83845504 83845504 C T DOPEY1 Missense_Mutation p.R1013C 0.38 tolerated(0.26) probably_damaging(0.953) TCGA-CQ-5324-01 7 48080963 48080963 G A C7orf57 Missense_Mutation p.E30K 0.24 deleterious(0.01) benign(0.199) TCGA-CQ-5324-01 7 86415775 86415775 G A GRM3 Missense_Mutation p.G223R 0.36 deleterious(0) probably_damaging(1) TCGA-CQ-5324-01 8 97311963 97311963 G A PTDSS1 Nonsense_Mutation p.W214* 0.41 TCGA-CQ-5324-01 9 84609395 84609395 C G SPATA31D1 Missense_Mutation p.S1337C 0.36 deleterious(0.03) benign(0.333) TCGA-CQ-5324-01 X 129201147 129201147 G A ELF4 Missense_Mutation p.S514F 0.69 deleterious(0.01) benign(0.425) TCGA-CQ-5324-01 X 34962352 34962352 G A FAM47B Nonsense_Mutation p.W468* 0.08 TCGA-CQ-5325-01 10 105821185 105821185 G A COL17A1 Silent p.N319N 0.19 TCGA-CQ-5325-01 10 115601164 115601164 C G DCLRE1A Splice_Site p.X940_splice 0.08 TCGA-CQ-5325-01 10 124389869 124389869 G A DMBT1 Missense_Mutation p.S1834N 0.06 tolerated(0.16) probably_damaging(0.99) TCGA-CQ-5325-01 10 94268582 94268582 G C IDE Missense_Mutation p.D321E 0.09 deleterious(0) probably_damaging(0.999) TCGA-CQ-5325-01 11 113609058 113609058 T A ZW10 Missense_Mutation p.L604F 0.19 deleterious(0) probably_damaging(0.998) TCGA-CQ-5325-01 11 1651586 1651615 CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA - KRTAP5-5 In_Frame_Del p.Y192_P201del 0.56 TCGA-CQ-5325-01 11 61105464 61105464 G A DAK Missense_Mutation p.A19T 0.15 tolerated(0.49) benign(0.014) TCGA-CQ-5325-01 11 6290927 6290927 T G CCKBR Silent p.L60L 0.09 TCGA-CQ-5325-01 11 67274859 67274859 C T CDK2AP2 Missense_Mutation p.S97N 0.11 tolerated(0.07) possibly_damaging(0.847) TCGA-CQ-5325-01 12 109051107 109051107 G C CORO1C Missense_Mutation p.S241R 0.15 deleterious(0) probably_damaging(0.966) TCGA-CQ-5325-01 12 113348885 113348885 C T OAS1 Missense_Mutation p.P167S 0.09 tolerated(0.12) possibly_damaging(0.76) TCGA-CQ-5325-01 12 121017178 121017178 G T POP5 Missense_Mutation p.S145R 0.08 tolerated(0.09) possibly_damaging(0.454) TCGA-CQ-5325-01 12 123475222 123475222 T C PITPNM2 Silent p.Q813Q 0.09 TCGA-CQ-5325-01 12 12871015 12871015 A G CDKN1B Missense_Mutation p.K81R 0.09 tolerated(0.51) benign(0.002) TCGA-CQ-5325-01 12 25671777 25671777 A G IFLTD1 Silent p.L381L 0.07 TCGA-CQ-5325-01 13 32913306 32913306 T A BRCA2 Missense_Mutation p.V1605D 0.05 deleterious(0.03) benign(0.222) TCGA-CQ-5325-01 14 20779905 20779905 T C CCNB1IP1 Missense_Mutation p.N213S 0.13 tolerated_low_confidence(0.82) benign(0) TCGA-CQ-5325-01 14 23020699 23020699 A T AE000662.92 5'Flank 0.12 TCGA-CQ-5325-01 14 31122764 31122764 G A SCFD1 Nonsense_Mutation p.W275* 0.06 TCGA-CQ-5325-01 15 66795588 66795588 G - RPL4 Intron 0.09 TCGA-CQ-5325-01 16 56973962 56973962 A T HERPUD1 Missense_Mutation p.N237I 0.12 deleterious(0) probably_damaging(0.997) TCGA-CQ-5325-01 16 78466645 78466645 C A WWOX Missense_Mutation p.S351Y 0.07 deleterious(0) probably_damaging(0.95) TCGA-CQ-5325-01 16 89789965 89789965 C T ZNF276 Missense_Mutation p.T285I 0.09 tolerated(0.2) benign(0.001) TCGA-CQ-5325-01 17 38634851 38634851 T A TNS4 Missense_Mutation p.M654L 0.12 tolerated(0.1) benign(0.007) TCGA-CQ-5325-01 18 14478208 14478208 C G CXADRP3 RNA 0.11 TCGA-CQ-5325-01 18 56204982 56204982 C T ALPK2 Missense_Mutation p.G813R 0.11 tolerated(0.16) benign(0.086) TCGA-CQ-5325-01 19 39433241 39433241 C T FBXO17 3'UTR 0.11 TCGA-CQ-5325-01 19 40872532 40872532 G T PLD3 Nonsense_Mutation p.E15* 0.07 TCGA-CQ-5325-01 19 45895445 45895445 G A PPP1R13L Missense_Mutation p.S503L 0.12 deleterious(0.03) benign(0.32) TCGA-CQ-5325-01 19 46890482 46890482 G A PPP5C Missense_Mutation p.G346D 0.09 tolerated(0.48) benign(0.007) TCGA-CQ-5325-01 19 55341406 55341406 C T KIR3DL1 Missense_Mutation p.P377S 0.11 deleterious(0.02) benign(0.081) TCGA-CQ-5325-01 1 205904863 205904863 C T SLC26A9 Missense_Mutation p.R29Q 0.12 tolerated(0.07) probably_damaging(0.949) TCGA-CQ-5325-01 1 27697413 27697413 G A FCN3 Silent p.S148S 0.14 TCGA-CQ-5325-01 1 34666421 34666421 T C C1orf94 Missense_Mutation p.F353S 0.11 deleterious(0.01) probably_damaging(0.917) TCGA-CQ-5325-01 20 3053107 3053107 C T OXT 3'UTR 0.11 TCGA-CQ-5325-01 20 470519 470519 C T CSNK2A1 Missense_Mutation p.D210N 0.06 deleterious(0) probably_damaging(0.996) TCGA-CQ-5325-01 20 49204362 49204362 G T FAM65C Missense_Mutation p.A906D 0.10 deleterious(0) probably_damaging(1) TCGA-CQ-5325-01 22 37914082 37914082 T A CARD10 Missense_Mutation p.K90M 0.12 deleterious(0) possibly_damaging(0.903) TCGA-CQ-5325-01 2 155158099 155158099 C T GALNT13 Missense_Mutation p.P385S 0.05 tolerated(0.19) benign(0.173) TCGA-CQ-5325-01 2 167760367 167760367 G C XIRP2 Missense_Mutation p.K125N 0.08 benign(0.302) TCGA-CQ-5325-01 2 179404673 179404673 C G TTN Missense_Mutation p.D32707H 0.05 TCGA-CQ-5325-01 2 219299377 219299377 T G VIL1 Missense_Mutation p.N543K 0.13 deleterious(0) possibly_damaging(0.903) TCGA-CQ-5325-01 2 233671317 233671317 A T GIGYF2 Missense_Mutation p.M607L 0.08 benign(0.038) TCGA-CQ-5325-01 4 109667916 109667916 A C ETNPPL Splice_Site p.X391_splice 0.07 TCGA-CQ-5325-01 4 56316289 56316289 T C CLOCK Silent p.K439K 0.09 TCGA-CQ-5325-01 4 9998412 9998412 G T SLC2A9 Missense_Mutation p.L135I 0.19 tolerated(0.06) benign(0.12) TCGA-CQ-5325-01 5 140215046 140215046 C A PCDHA7 Missense_Mutation p.P360T 0.10 tolerated_low_confidence(0.07) benign(0.013) TCGA-CQ-5325-01 5 140784899 140784899 T C PCDHGA9 Missense_Mutation p.S794P 0.10 tolerated_low_confidence(0.21) benign(0.018) TCGA-CQ-5325-01 5 31541084 31541084 A G C5orf22 Missense_Mutation p.Y279C 0.09 deleterious(0) probably_damaging(0.968) TCGA-CQ-5325-01 6 151671792 151671792 G A AKAP12 Missense_Mutation p.V756I 0.07 tolerated(0.17) probably_damaging(0.999) TCGA-CQ-5325-01 6 47563699 47563699 C T CD2AP Missense_Mutation p.S404F 0.11 deleterious(0.02) benign(0.372) TCGA-CQ-5325-01 7 111368576 111368576 C T DOCK4 Silent p.P1885P 0.09 TCGA-CQ-5325-01 7 129986247 129986247 G A CPA5 Splice_Site 0.15 TCGA-CQ-5325-01 7 152346254 152346254 C A XRCC2 Nonsense_Mutation p.E106* 0.11 TCGA-CQ-5325-01 8 103237159 103237159 T A RRM2B Missense_Mutation p.M137L 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-CQ-5325-01 8 27373874 27373874 C A EPHX2 Missense_Mutation p.A290D 0.10 deleterious(0) probably_damaging(0.998) TCGA-CQ-5325-01 8 33310867 33310867 G A FUT10 Silent p.Y81Y 0.08 TCGA-CQ-5325-01 8 39678606 39678606 A C ADAM2 Missense_Mutation p.V143G 0.15 deleterious(0) possibly_damaging(0.536) TCGA-CQ-5325-01 8 54764582 54764582 C T RGS20 Silent p.I41I 0.13 TCGA-CQ-5325-01 8 70488393 70488393 C T SULF1 Missense_Mutation p.H121Y 0.16 tolerated(0.16) benign(0.169) TCGA-CQ-5325-01 8 77765833 77765833 A G ZFHX4 Missense_Mutation p.K2226E 0.12 possibly_damaging(0.461) TCGA-CQ-5325-01 9 101599413 101599413 A C GALNT12 Missense_Mutation p.N399H 0.05 deleterious(0) probably_damaging(0.928) TCGA-CQ-5325-01 9 15486860 15486860 C - PSIP1 Frame_Shift_Del p.E120Kfs*14 0.12 TCGA-CQ-5325-01 9 6328607 6328607 C G TPD52L3 Silent p.A4A 0.40 TCGA-CQ-5325-01 9 98997827 98997827 G T HSD17B3 Missense_Mutation p.A283D 0.25 tolerated(0.61) benign(0.104) TCGA-CQ-5325-01 X 31947847 31947847 A G DMD Silent p.L2260L 0.27 TCGA-CQ-5325-01 X 75648934 75648934 C T MAGEE1 Missense_Mutation p.P204L 0.24 tolerated_low_confidence(0.49) benign(0.001) TCGA-CQ-5325-01 X 78616566 78616566 G A ITM2A 3'UTR 0.31 TCGA-CQ-5325-01 X 90691201 90691201 G A PABPC5 Missense_Mutation p.D209N 0.19 tolerated(0.11) benign(0.004) TCGA-CQ-5326-01 10 102054860 102054860 G A PKD2L1 Silent p.F459F 0.16 TCGA-CQ-5326-01 10 106014946 106014946 G A GSTO1 Silent p.P20P 0.28 TCGA-CQ-5326-01 10 126660540 126660540 C G ZRANB1 Missense_Mutation p.Q337E 0.12 tolerated(0.38) benign(0.124) TCGA-CQ-5326-01 10 14816385 14816385 G C FAM107B Nonsense_Mutation p.S93* 0.32 TCGA-CQ-5326-01 10 46999441 46999441 G C GPRIN2 Missense_Mutation p.W187C 0.19 tolerated(0.14) benign(0.006) TCGA-CQ-5326-01 10 48390446 48390446 C G RBP3 Silent p.L144L 0.20 TCGA-CQ-5326-01 10 50819200 50819200 G C SLC18A3 Silent p.V138V 0.26 TCGA-CQ-5326-01 10 55566626 55566626 C A PCDH15 Nonsense_Mutation p.E1587* 0.05 TCGA-CQ-5326-01 10 55826607 55826607 G C PCDH15 Silent p.V710V 0.20 TCGA-CQ-5326-01 10 69934302 69934302 C G MYPN Missense_Mutation p.S818C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CQ-5326-01 10 79581243 79581243 G A DLG5 Missense_Mutation p.S1000F 0.31 deleterious(0) probably_damaging(0.909) TCGA-CQ-5326-01 10 97607402 97607402 G A ENTPD1 Missense_Mutation p.C350Y 0.08 deleterious(0.01) probably_damaging(1) TCGA-CQ-5326-01 11 113614714 113614714 C T ZW10 Missense_Mutation p.E441K 0.23 tolerated(0.73) benign(0.008) TCGA-CQ-5326-01 11 116649676 116649676 C G ZNF259 Missense_Mutation p.E449Q 0.21 deleterious(0) probably_damaging(0.973) TCGA-CQ-5326-01 11 117186311 117186311 C G BACE1 Silent p.L67L 0.15 TCGA-CQ-5326-01 11 118111030 118111030 C T MPZL3 Missense_Mutation p.E46K 0.18 tolerated(0.05) possibly_damaging(0.893) TCGA-CQ-5326-01 11 121478812 121478812 G A SORL1 Splice_Site p.X1723_splice 0.57 TCGA-CQ-5326-01 11 16007886 16007886 C T SOX6 Missense_Mutation p.E663K 0.27 deleterious(0) probably_damaging(0.997) TCGA-CQ-5326-01 11 399093 399093 C G PKP3 Nonsense_Mutation p.Y390* 0.28 TCGA-CQ-5326-01 11 46394220 46394220 A G DGKZ Missense_Mutation p.D543G 0.33 deleterious(0) probably_damaging(0.998) TCGA-CQ-5326-01 11 47698947 47698947 G C AGBL2 Missense_Mutation p.Q675E 0.14 deleterious(0.04) benign(0.097) TCGA-CQ-5326-01 11 49186311 49186311 C T FOLH1 Silent p.L462L 0.22 TCGA-CQ-5326-01 11 51411717 51411717 G A OR4A5 Nonsense_Mutation p.Q227* 0.08 TCGA-CQ-5326-01 11 5529406 5529406 A G UBQLN3 Silent p.S461S 0.14 TCGA-CQ-5326-01 11 60620857 60620857 G C PTGDR2 Silent p.L113L 0.23 TCGA-CQ-5326-01 11 61906207 61906207 G A INCENP Missense_Mutation p.E380K 0.22 tolerated(0.57) unknown(0) TCGA-CQ-5326-01 11 63764101 63764101 G A OTUB1 Missense_Mutation p.D107N 0.22 tolerated(0.37) benign(0.007) TCGA-CQ-5326-01 11 66009032 66009032 C T PACS1 Missense_Mutation p.S855L 0.14 deleterious(0) probably_damaging(0.992) TCGA-CQ-5326-01 11 67271646 67271646 G T PITPNM1 Silent p.L2L 0.17 TCGA-CQ-5326-01 11 67818101 67818101 C A TCIRG1 Nonsense_Mutation p.S795* 0.25 TCGA-CQ-5326-01 11 68197131 68197131 C G LRP5 Silent p.V1242V 0.12 TCGA-CQ-5326-01 11 68707222 68707222 C T IGHMBP2 3'UTR 0.10 TCGA-CQ-5326-01 11 73068155 73068155 C T ARHGEF17 Missense_Mutation p.S1326F 0.09 deleterious(0.04) possibly_damaging(0.572) TCGA-CQ-5326-01 11 76507546 76507546 G A TSKU Missense_Mutation p.E296K 0.11 tolerated(0.86) possibly_damaging(0.45) TCGA-CQ-5326-01 11 78369098 78369098 C G TENM4 3'UTR 0.05 TCGA-CQ-5326-01 11 89891330 89891330 G C NAALAD2 Missense_Mutation p.D272H 0.25 deleterious(0.03) benign(0.065) TCGA-CQ-5326-01 12 110236715 110236715 C A TRPV4 Nonsense_Mutation p.E286* 0.26 TCGA-CQ-5326-01 12 122748187 122748187 C T VPS33A Silent p.V76V 0.12 TCGA-CQ-5326-01 12 123444339 123444339 C T ABCB9 Silent p.E148E 0.21 TCGA-CQ-5326-01 12 131593290 131593290 G A GPR133 Missense_Mutation p.V637M 0.20 tolerated(0.27) benign(0.15) TCGA-CQ-5326-01 12 43944794 43944794 G A ADAMTS20 Missense_Mutation p.S124L 0.11 tolerated(0.12) benign(0.012) TCGA-CQ-5326-01 12 48526696 48526696 C T PFKM Nonsense_Mutation p.R166* 0.17 TCGA-CQ-5326-01 12 53880947 53880947 C T MAP3K12 Missense_Mutation p.A77T 0.19 tolerated(0.19) benign(0.09) TCGA-CQ-5326-01 12 56565655 56565655 C T SMARCC2 Missense_Mutation p.E634K 0.08 deleterious(0) possibly_damaging(0.635) TCGA-CQ-5326-01 12 57642941 57642941 C G STAC3 Missense_Mutation p.E73Q 0.28 tolerated(0.1) probably_damaging(0.991) TCGA-CQ-5326-01 12 76740945 76740945 C G BBS10 Missense_Mutation p.E274Q 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-CQ-5326-01 12 7981428 7981428 T C SLC2A14 Missense_Mutation p.E206G 0.09 tolerated(0.07) benign(0.063) TCGA-CQ-5326-01 12 82147853 82147853 G A PPFIA2 Missense_Mutation p.R50W 0.24 deleterious(0) probably_damaging(0.999) TCGA-CQ-5326-01 12 97136306 97136306 C G C12orf55 Missense_Mutation p.C2387W 0.16 deleterious(0) benign(0.009) TCGA-CQ-5326-01 13 111980540 111980540 T C TEX29 Silent p.V23V 0.23 TCGA-CQ-5326-01 13 53418853 53418853 C G PCDH8 Missense_Mutation p.E1019Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-CQ-5326-01 13 73320742 73320742 G A BORA Silent p.S325S 0.19 TCGA-CQ-5326-01 13 79940220 79940220 G A RBM26 Missense_Mutation p.P416S 0.17 tolerated(0.19) probably_damaging(0.929) TCGA-CQ-5326-01 14 103372149 103372149 G A TRAF3 3'UTR 0.27 TCGA-CQ-5326-01 14 47566311 47566311 T C MDGA2 Missense_Mutation p.K314R 0.36 tolerated(0.2) possibly_damaging(0.6) TCGA-CQ-5326-01 14 57268748 57268748 G A OTX2 Missense_Mutation p.S200L 0.21 deleterious(0.01) possibly_damaging(0.61) TCGA-CQ-5326-01 14 80130178 80130178 G T NRXN3 Nonsense_Mutation p.E795* 0.14 TCGA-CQ-5326-01 14 92136190 92136190 G A CATSPERB Nonsense_Mutation p.R419* 0.29 TCGA-CQ-5326-01 15 24923158 24923158 C A NPAP1 Missense_Mutation p.S715Y 0.24 tolerated(0.65) benign(0.065) TCGA-CQ-5326-01 15 43687329 43687329 G T TUBGCP4 Nonsense_Mutation p.E347* 0.17 TCGA-CQ-5326-01 15 44085799 44085799 G T SERF2 Nonsense_Mutation p.E48* 0.18 TCGA-CQ-5326-01 15 83455869 83455869 C G FSD2 Missense_Mutation p.D92H 0.22 tolerated(0.06) benign(0.422) TCGA-CQ-5326-01 15 83455949 83455949 C G FSD2 Missense_Mutation p.R65T 0.26 tolerated(0.34) benign(0.003) TCGA-CQ-5326-01 15 91428286 91428286 C T FES Missense_Mutation p.S4F 0.20 deleterious(0) probably_damaging(0.934) TCGA-CQ-5326-01 16 12758885 12758885 C T CPPED1 Missense_Mutation p.G268E 0.07 deleterious(0) probably_damaging(0.967) TCGA-CQ-5326-01 16 1399476 1399476 C A TSR3 Nonsense_Mutation p.E301* 0.24 TCGA-CQ-5326-01 16 1840972 1840972 G A IGFALS Missense_Mutation p.R521W 0.33 deleterious(0.04) probably_damaging(0.953) TCGA-CQ-5326-01 16 2025598 2025598 G C TBL3 Missense_Mutation p.G292R 0.23 tolerated(0.26) benign(0.002) TCGA-CQ-5326-01 16 20348623 20348623 T C UMOD Missense_Mutation p.K577R 0.31 tolerated(0.1) benign(0.438) TCGA-CQ-5326-01 16 2812868 2812868 C T SRRM2 Missense_Mutation p.S780L 0.17 benign(0.184) TCGA-CQ-5326-01 16 31340546 31340546 C T ITGAM Intron 0.30 TCGA-CQ-5326-01 16 3632510 3632510 C T SLX4 Missense_Mutation p.E1780K 0.18 deleterious(0.02) benign(0.157) TCGA-CQ-5326-01 16 54966471 54966471 C T IRX5 Missense_Mutation p.A104V 0.21 deleterious(0.04) possibly_damaging(0.565) TCGA-CQ-5326-01 16 55844472 55844472 C G CES1 Silent p.V425V 0.24 TCGA-CQ-5326-01 16 70597814 70597814 A G SF3B3 Missense_Mutation p.N775S 0.28 tolerated(0.08) probably_damaging(0.987) TCGA-CQ-5326-01 16 716348 716348 G C WDR90 Missense_Mutation p.E1580Q 0.10 tolerated(0.63) benign(0.154) TCGA-CQ-5326-01 16 75674163 75674163 T A KARS Missense_Mutation p.I131F 0.22 tolerated(0.12) benign(0.291) TCGA-CQ-5326-01 16 8890280 8890280 C G TMEM186 Missense_Mutation p.W57C 0.10 tolerated(0.15) benign(0.155) TCGA-CQ-5326-01 17 13972833 13972833 G - COX10 5'Flank 0.31 TCGA-CQ-5326-01 17 1787118 1787118 A G RPA1 Silent p.E418E 0.24 TCGA-CQ-5326-01 17 27908398 27908398 T A GIT1 Missense_Mutation p.D240V 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-CQ-5326-01 17 28788939 28788939 G A CPD Silent p.K1225K 0.26 TCGA-CQ-5326-01 17 32964747 32964747 C G TMEM132E Missense_Mutation p.I817M 0.16 deleterious(0) probably_damaging(0.999) TCGA-CQ-5326-01 17 33902672 33902672 A G PEX12 3'UTR 0.23 TCGA-CQ-5326-01 17 3436163 3436163 C T TRPV3 Missense_Mutation p.E285K 0.33 tolerated(0.72) benign(0.002) TCGA-CQ-5326-01 17 39846111 39846111 G C EIF1 Missense_Mutation p.R38T 0.32 deleterious(0) benign(0.086) TCGA-CQ-5326-01 17 40843268 40843268 G C CNTNAP1 Missense_Mutation p.D725H 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-CQ-5326-01 17 41008480 41008480 G C AOC3 Missense_Mutation p.E735D 0.21 tolerated(0.21) benign(0.318) TCGA-CQ-5326-01 17 41256889 41256889 C T BRCA1 Silent p.L99L 0.26 TCGA-CQ-5326-01 17 47797212 47797212 G A FAM117A Silent p.L206L 0.08 TCGA-CQ-5326-01 17 49713219 49713219 C T CA10 Missense_Mutation p.M262I 0.28 tolerated(0.25) benign(0.002) TCGA-CQ-5326-01 17 73698631 73698631 G A SAP30BP Silent p.K156K 0.22 TCGA-CQ-5326-01 17 73998411 73998411 T C CDK3 Missense_Mutation p.L133P 0.15 deleterious(0) probably_damaging(1) TCGA-CQ-5326-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.23 deleterious(0) probably_damaging(0.994) TCGA-CQ-5326-01 17 7579698 7579698 A C TP53 Splice_Site p.X32_splice 0.16 TCGA-CQ-5326-01 17 80151991 80151991 C T CCDC57 Missense_Mutation p.E215K 0.16 tolerated(0.12) benign(0.373) TCGA-CQ-5326-01 18 21047484 21047484 G T RIOK3 Missense_Mutation p.G270V 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-CQ-5326-01 19 10090691 10090691 G A COL5A3 Silent p.F879F 0.28 TCGA-CQ-5326-01 19 10090711 10090711 G A COL5A3 Silent p.L873L 0.32 TCGA-CQ-5326-01 19 11145805 11145805 C G SMARCA4 Silent p.L1389L 0.48 TCGA-CQ-5326-01 19 11152041 11152041 C T SMARCA4 Missense_Mutation p.S1410L 0.62 benign(0.071) TCGA-CQ-5326-01 19 11546923 11546924 - A PRKCSH 5'UTR 0.17 TCGA-CQ-5326-01 19 11978656 11978656 C T ZNF439 Nonsense_Mutation p.R258* 0.49 TCGA-CQ-5326-01 19 12739575 12739575 C T ZNF791 Missense_Mutation p.P411L 0.19 deleterious(0.02) probably_damaging(1) TCGA-CQ-5326-01 19 15769192 15769192 C A CYP4F3 Silent p.R412R 0.13 TCGA-CQ-5326-01 19 18729056 18729056 C T TMEM59L Silent p.D252D 0.12 TCGA-CQ-5326-01 19 1877366 1877366 C T ABHD17A Missense_Mutation p.E307K 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-CQ-5326-01 19 22156015 22156015 T C ZNF208 Silent p.K607K 0.10 TCGA-CQ-5326-01 19 36606805 36606805 G A TBCB Intron 0.43 TCGA-CQ-5326-01 19 3747947 3747947 G T TJP3 Missense_Mutation p.E835D 0.37 tolerated(0.16) probably_damaging(0.999) TCGA-CQ-5326-01 19 38800243 38800243 G A YIF1B Silent p.A33A 0.27 TCGA-CQ-5326-01 19 41387649 41387649 T A CYP2A7 Missense_Mutation p.E63V 0.14 deleterious(0.01) benign(0.199) TCGA-CQ-5326-01 19 42799110 42799110 G T CIC Nonsense_Mutation p.E1532* 0.17 TCGA-CQ-5326-01 19 50358319 50358319 C T PTOV1 Silent p.I181I 0.24 TCGA-CQ-5326-01 19 50370502 50370502 G A PNKP Intron 0.31 TCGA-CQ-5326-01 19 51630370 51630370 G T SIGLEC9 Missense_Mutation p.D278Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-CQ-5326-01 19 53158916 53158916 C T CTD-3099C6.9 5'Flank 0.11 TCGA-CQ-5326-01 19 54662148 54662148 C T LENG1 Missense_Mutation p.E62K 0.15 tolerated(0.35) benign(0.22) TCGA-CQ-5326-01 1 104297418 104297418 A T AMY1C Missense_Mutation p.R361S 0.14 tolerated(0.07) probably_damaging(0.998) TCGA-CQ-5326-01 1 10434488 10434488 C T KIF1B Silent p.L1641L 0.36 TCGA-CQ-5326-01 1 153043109 153043109 C T SPRR2B Silent p.P69P 0.25 TCGA-CQ-5326-01 1 153633832 153633832 C G SNAPIN 3'UTR 0.27 TCGA-CQ-5326-01 1 155292131 155292131 G T RUSC1 Missense_Mutation p.Q189H 0.29 deleterious_low_confidence(0.04) benign(0.002) TCGA-CQ-5326-01 1 166039589 166039589 C T FAM78B Silent p.R225R 0.17 TCGA-CQ-5326-01 1 16893673 16893673 C A NBPF1 Splice_Site p.X947_splice 0.02 TCGA-CQ-5326-01 1 197411189 197411189 G C CRB1 Intron 0.24 TCGA-CQ-5326-01 1 202287946 202287946 C T LGR6 Missense_Mutation p.R839W 0.23 tolerated(0.13) benign(0.028) TCGA-CQ-5326-01 1 2077510 2077510 C T PRKCZ Silent p.N199N 0.33 TCGA-CQ-5326-01 1 228432096 228432096 A G OBSCN Missense_Mutation p.Q1194R 0.09 benign(0.29) TCGA-CQ-5326-01 1 243305599 243305599 C T CEP170 Intron 0.18 TCGA-CQ-5326-01 1 248028108 248028108 G A TRIM58 Silent p.A206A 0.35 TCGA-CQ-5326-01 1 2523445 2523445 C G MMEL1 Missense_Mutation p.E697Q 0.35 tolerated(0.28) benign(0.042) TCGA-CQ-5326-01 1 25944444 25944444 C G MAN1C1 Silent p.L52L 0.11 TCGA-CQ-5326-01 1 25944475 25944475 C G MAN1C1 Missense_Mutation p.L63V 0.09 tolerated(0.51) benign(0.004) TCGA-CQ-5326-01 1 32210289 32210289 C T BAI2 Silent p.P294P 0.25 TCGA-CQ-5326-01 1 33252028 33252028 C G YARS Missense_Mutation p.E281Q 0.23 tolerated(0.06) benign(0.261) TCGA-CQ-5326-01 1 3334404 3334404 G T PRDM16 Nonsense_Mutation p.E902* 0.20 TCGA-CQ-5326-01 1 39748094 39748094 C G MACF1 Intron 0.17 TCGA-CQ-5326-01 1 39753030 39753030 C T MACF1 Silent p.F532F 0.24 TCGA-CQ-5326-01 1 39753073 39753073 C G MACF1 Missense_Mutation p.H547D 0.22 benign(0.076) TCGA-CQ-5326-01 1 59148058 59148058 C T MYSM1 Missense_Mutation p.D220N 0.17 deleterious(0.01) probably_damaging(1) TCGA-CQ-5326-01 1 6528529 6528529 G C PLEKHG5 Silent p.L868L 0.25 TCGA-CQ-5326-01 1 70505456 70505456 G C LRRC7 Missense_Mutation p.E1279Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-CQ-5326-01 1 79387472 79387472 C A ELTD1 Splice_Site p.X362_splice 0.16 TCGA-CQ-5326-01 1 97235416 97235416 G C PTBP2 Silent p.L91L 0.27 TCGA-CQ-5326-01 20 19937330 19937330 A G RIN2 Missense_Mutation p.Y126C 0.21 deleterious(0) probably_damaging(0.999) TCGA-CQ-5326-01 20 23666527 23666527 A G CST4 3'UTR 0.18 TCGA-CQ-5326-01 20 31380492 31380492 C G DNMT3B Missense_Mutation p.Q328E 0.23 tolerated(0.23) possibly_damaging(0.696) TCGA-CQ-5326-01 20 35695270 35695270 G A RBL1 Missense_Mutation p.H235Y 0.22 tolerated(0.09) benign(0.206) TCGA-CQ-5326-01 20 42157954 42157954 G A L3MBTL1 Silent p.L312L 0.13 TCGA-CQ-5326-01 20 46265274 46265274 C T NCOA3 Missense_Mutation p.S715F 0.25 deleterious(0.03) benign(0.005) TCGA-CQ-5326-01 20 58514189 58514189 G C PPP1R3D Nonsense_Mutation p.Y266* 0.37 TCGA-CQ-5326-01 20 5932702 5932702 G A MCM8 Missense_Mutation p.R14K 0.25 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CQ-5326-01 20 61386205 61386205 G A NTSR1 Missense_Mutation p.V295I 0.24 tolerated(1) benign(0.006) TCGA-CQ-5326-01 20 61917778 61917778 G C ARFGAP1 Missense_Mutation p.E307Q 0.12 tolerated(0.16) benign(0.127) TCGA-CQ-5326-01 20 62738005 62738005 C G NPBWR2 Silent p.L60L 0.33 TCGA-CQ-5326-01 21 34903798 34903798 C T GART Silent p.V198V 0.16 TCGA-CQ-5326-01 21 35093561 35093561 C G ITSN1 Missense_Mutation p.S36C 0.21 tolerated(0.06) unknown(0) TCGA-CQ-5326-01 21 47548944 47548944 C G COL6A2 Intron 0.43 TCGA-CQ-5326-01 21 47626622 47626623 - C LSS Frame_Shift_Ins p.H510Afs*18 0.29 TCGA-CQ-5326-01 22 21133697 21133697 G C SERPIND1 Missense_Mutation p.E33Q 0.12 tolerated_low_confidence(0.23) benign(0.014) TCGA-CQ-5326-01 22 26118442 26118442 G A ADRBK2 3'UTR 0.14 TCGA-CQ-5326-01 22 31592944 31592944 C G RNF185 Missense_Mutation p.Q111E 0.11 tolerated(0.2) benign(0.048) TCGA-CQ-5326-01 22 32289694 32289694 A T DEPDC5 Missense_Mutation p.K1378M 0.32 tolerated(0.09) probably_damaging(0.999) TCGA-CQ-5326-01 22 39883475 39883475 C T MGAT3 Silent p.L41L 0.18 TCGA-CQ-5326-01 22 39884111 39884111 C G MGAT3 Missense_Mutation p.F253L 0.15 tolerated(0.5) benign(0.405) TCGA-CQ-5326-01 22 41553402 41553402 G A EP300 Missense_Mutation p.C1164Y 0.24 probably_damaging(1) TCGA-CQ-5326-01 22 46657755 46657755 C T PKDREJ Missense_Mutation p.D489N 0.16 tolerated(0.28) possibly_damaging(0.88) TCGA-CQ-5326-01 22 47193380 47193380 C G TBC1D22A Missense_Mutation p.S167C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CQ-5326-01 22 50528857 50528857 G A MOV10L1 Intron 0.15 TCGA-CQ-5326-01 22 51137179 51137179 C T SHANK3 Silent p.F536F 0.20 TCGA-CQ-5326-01 2 101881353 101881353 T C CNOT11 Silent p.I293I 0.16 TCGA-CQ-5326-01 2 128384562 128384562 C G MYO7B Missense_Mutation p.Q1384E 0.27 tolerated(0.12) benign(0.002) TCGA-CQ-5326-01 2 160019983 160019983 C G TANC1 Nonsense_Mutation p.S291* 0.26 TCGA-CQ-5326-01 2 170493609 170493609 G A PPIG Missense_Mutation p.G614E 0.19 tolerated_low_confidence(0.76) unknown(0) TCGA-CQ-5326-01 2 170493718 170493718 G C PPIG Missense_Mutation p.K650N 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-CQ-5326-01 2 170592202 170592202 C G KLHL23 Missense_Mutation p.I226M 0.20 deleterious(0.05) benign(0.109) TCGA-CQ-5326-01 2 170897435 170897435 C T UBR3 Missense_Mutation p.H1534Y 0.31 deleterious(0.01) benign(0.036) TCGA-CQ-5326-01 2 17941197 17941197 A G GEN1 Intron 0.18 TCGA-CQ-5326-01 2 179412921 179412921 C T TTN Silent p.R31144R 0.26 TCGA-CQ-5326-01 2 179599162 179599166 ACAAG - TTN Frame_Shift_Del p.L5129Vfs*8 0.17 TCGA-CQ-5326-01 2 182322416 182322416 G A ITGA4 Missense_Mutation p.R12Q 0.28 tolerated(0.22) benign(0.014) TCGA-CQ-5326-01 2 191745874 191745874 A C GLS Missense_Mutation p.S22R 0.23 tolerated_low_confidence(0.1) benign(0.015) TCGA-CQ-5326-01 2 191845388 191845388 G A STAT1 Silent p.N530N 0.28 TCGA-CQ-5326-01 2 196801362 196801362 T C DNAH7 Missense_Mutation p.E1078G 0.17 deleterious(0.01) possibly_damaging(0.859) TCGA-CQ-5326-01 2 201757020 201757020 G A NIF3L1 Silent p.E118E 0.21 TCGA-CQ-5326-01 2 211319997 211319997 C T LANCL1 Missense_Mutation p.D81N 0.28 tolerated(0.19) possibly_damaging(0.825) TCGA-CQ-5326-01 2 220167381 220167381 C G PTPRN Missense_Mutation p.E186Q 0.21 tolerated(0.16) benign(0.222) TCGA-CQ-5326-01 2 242664469 242664469 G C ING5 3'UTR 0.19 TCGA-CQ-5326-01 2 27278818 27278818 G A AGBL5 Missense_Mutation p.E393K 0.18 tolerated(0.24) benign(0.012) TCGA-CQ-5326-01 2 27609064 27609064 C T PPM1G Silent p.Q91Q 0.22 TCGA-CQ-5326-01 2 27680753 27680753 C T IFT172 Silent p.K1022K 0.27 TCGA-CQ-5326-01 2 54112830 54112830 G A PSME4 Silent p.F1604F 0.20 TCGA-CQ-5326-01 2 65492283 65492283 T C ACTR2 Silent p.L335L 0.26 TCGA-CQ-5326-01 2 68488355 68488355 C G RP11-474G23.1 5'UTR 0.22 TCGA-CQ-5326-01 2 71186202 71186202 C T ATP6V1B1 Missense_Mutation p.A141V 0.08 deleterious(0.02) benign(0.052) TCGA-CQ-5326-01 2 74699368 74699368 G A MRPL53 Missense_Mutation p.R73C 0.22 deleterious(0) probably_damaging(0.939) TCGA-CQ-5326-01 3 100277257 100277257 T G TMEM45A Missense_Mutation p.F138V 0.26 deleterious(0) possibly_damaging(0.811) TCGA-CQ-5326-01 3 113377167 113377168 - A KIAA2018 Frame_Shift_Ins p.C1121Lfs*2 0.18 TCGA-CQ-5326-01 3 121641670 121641670 C T SLC15A2 Nonsense_Mutation p.R277* 0.35 TCGA-CQ-5326-01 3 135720782 135720782 T C PPP2R3A Missense_Mutation p.S148P 0.32 tolerated_low_confidence(0.88) probably_damaging(0.986) TCGA-CQ-5326-01 3 147128485 147128485 G A ZIC1 Missense_Mutation p.G196S 0.23 tolerated(0.37) benign(0.189) TCGA-CQ-5326-01 3 183209891 183209891 C T KLHL6 Missense_Mutation p.G564S 0.25 deleterious(0) probably_damaging(1) TCGA-CQ-5326-01 3 184910588 184910588 G A EHHADH Missense_Mutation p.S533F 0.26 tolerated(0.08) benign(0.392) TCGA-CQ-5326-01 3 188426301 188426301 G C LPP Intron 0.26 TCGA-CQ-5326-01 3 37032701 37032701 G C EPM2AIP1 3'UTR 0.27 TCGA-CQ-5326-01 3 52561343 52561343 G C NT5DC2 Missense_Mutation p.I362M 0.40 deleterious(0) probably_damaging(1) TCGA-CQ-5326-01 3 52675991 52675991 C A PBRM1 Nonsense_Mutation p.E356* 0.29 TCGA-CQ-5326-01 4 100871438 100871438 C T H2AFZ 5'UTR 0.25 TCGA-CQ-5326-01 4 120481508 120481508 G C PDE5A Missense_Mutation p.S381C 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-CQ-5326-01 4 3219628 3219628 C T HTT Silent p.I2397I 0.27 TCGA-CQ-5326-01 4 77283442 77283442 C G CCDC158 Missense_Mutation p.K619N 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-CQ-5326-01 4 85414577 85414577 G A NKX6-1 Silent p.D323D 0.26 TCGA-CQ-5326-01 5 13692077 13692077 G T DNAH5 3'UTR 0.25 TCGA-CQ-5326-01 5 140764430 140764430 C T PCDHGA7 Missense_Mutation p.S655L 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-CQ-5326-01 5 150947251 150947251 C G FAT2 Missense_Mutation p.L414F 0.16 possibly_damaging(0.594) TCGA-CQ-5326-01 5 173359491 173359491 C T CPEB4 Silent p.L416L 0.23 TCGA-CQ-5326-01 5 179260066 179260066 G A SQSTM1 Silent p.G263G 0.06 TCGA-CQ-5326-01 5 19571716 19571716 C G CDH18 Missense_Mutation p.D409H 0.23 deleterious(0) probably_damaging(0.995) TCGA-CQ-5326-01 5 39341263 39341263 C T C9 Missense_Mutation p.R154Q 0.29 deleterious(0.03) probably_damaging(0.966) TCGA-CQ-5326-01 5 41158799 41158799 G A C6 Missense_Mutation p.P649S 0.12 tolerated(0.25) benign(0.227) TCGA-CQ-5326-01 5 55253084 55253084 C G IL6ST Missense_Mutation p.D337H 0.10 tolerated(0.16) benign(0.002) TCGA-CQ-5326-01 6 105177497 105177497 G C HACE1 3'UTR 0.18 TCGA-CQ-5326-01 6 10707720 10707720 C A PAK1IP1 Silent p.I271I 0.19 TCGA-CQ-5326-01 6 111697184 111697184 G A REV3L Nonsense_Mutation p.Q792* 0.16 TCGA-CQ-5326-01 6 11213915 11213915 C T NEDD9 Missense_Mutation p.E20K 0.16 deleterious(0) probably_damaging(0.995) TCGA-CQ-5326-01 6 112671180 112671180 C G RFPL4B Silent p.L90L 0.06 TCGA-CQ-5326-01 6 116987891 116987891 T A ZUFSP Missense_Mutation p.E155D 0.18 tolerated(0.16) benign(0.222) TCGA-CQ-5326-01 6 123637620 123637620 C T TRDN Missense_Mutation p.E498K 0.18 tolerated_low_confidence(0.22) probably_damaging(0.971) TCGA-CQ-5326-01 6 137245833 137245833 G C SLC35D3 Nonstop_Mutation p.*417Sext*17 0.27 TCGA-CQ-5326-01 6 167754040 167754040 C T TTLL2 Missense_Mutation p.R218C 0.24 deleterious(0.02) benign(0.019) TCGA-CQ-5326-01 6 27839692 27839692 C G HIST1H3I Missense_Mutation p.E134D 0.09 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-CQ-5326-01 6 27839802 27839802 C T HIST1H3I Missense_Mutation p.E98K 0.18 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-CQ-5326-01 6 31516144 31516144 G A ATP6V1G2 5'Flank 0.25 TCGA-CQ-5326-01 6 33237329 33237329 G C VPS52 Missense_Mutation p.Q104E 0.21 tolerated(0.22) benign(0.017) TCGA-CQ-5326-01 6 33384884 33384884 T C CUTA Missense_Mutation p.E137G 0.25 deleterious(0) probably_damaging(1) TCGA-CQ-5326-01 6 34614570 34614570 C G C6orf106 Missense_Mutation p.E107Q 0.23 deleterious(0.02) benign(0.273) TCGA-CQ-5326-01 6 35773543 35773543 C T LHFPL5 Silent p.L32L 0.26 TCGA-CQ-5326-01 6 46793145 46793145 G A MEP1A Silent p.K231K 0.27 TCGA-CQ-5326-01 6 46826148 46826148 G C GPR116 Silent p.L1164L 0.30 TCGA-CQ-5326-01 6 76376506 76376506 C T SENP6 Missense_Mutation p.S358L 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-CQ-5326-01 7 103050935 103050935 C T SLC26A5 Missense_Mutation p.R211H 0.18 deleterious(0.01) probably_damaging(0.917) TCGA-CQ-5326-01 7 106836328 106836328 A G HBP1 Missense_Mutation p.M373V 0.27 deleterious(0) probably_damaging(0.977) TCGA-CQ-5326-01 7 11468681 11468681 G A THSD7A Missense_Mutation p.R1046C 0.22 tolerated(0.08) probably_damaging(0.964) TCGA-CQ-5326-01 7 131155605 131155605 G A MKLN1 Missense_Mutation p.E645K 0.21 tolerated(0.6) benign(0.002) TCGA-CQ-5326-01 7 132959795 132959795 G C EXOC4 Missense_Mutation p.E49Q 0.31 deleterious(0.03) probably_damaging(0.99) TCGA-CQ-5326-01 7 141618814 141618814 A T OR9A4 Missense_Mutation p.I47F 0.29 deleterious(0.02) benign(0.273) TCGA-CQ-5326-01 7 143573171 143573171 A T FAM115A Missense_Mutation p.S177R 0.33 deleterious(0) probably_damaging(0.992) TCGA-CQ-5326-01 7 143807023 143807023 G A OR2A2 Silent p.V116V 0.33 TCGA-CQ-5326-01 7 23349102 23349102 C A MALSU1 Missense_Mutation p.F215L 0.22 deleterious(0) probably_damaging(0.999) TCGA-CQ-5326-01 7 23766884 23766884 G C STK31 Missense_Mutation p.D92H 0.15 deleterious(0) probably_damaging(1) TCGA-CQ-5326-01 7 28996924 28996924 G C AC005013.5 5'Flank 0.14 TCGA-CQ-5326-01 7 32919190 32919190 G C KBTBD2 Missense_Mutation p.I9M 0.14 tolerated(0.08) benign(0.221) TCGA-CQ-5326-01 7 34118698 34118698 C G BMPER Silent p.L436L 0.21 TCGA-CQ-5326-01 7 43591890 43591890 G A HECW1 Missense_Mutation p.E1489K 0.19 deleterious(0) probably_damaging(0.996) TCGA-CQ-5326-01 7 6730809 6730809 C T ZNF12 Silent p.Q588Q 0.22 TCGA-CQ-5326-01 7 70255920 70255920 C T AUTS2 Silent p.L1240L 0.22 TCGA-CQ-5326-01 7 75894128 75894128 G C SRRM3 Missense_Mutation p.K240N 0.19 deleterious(0) unknown(0) TCGA-CQ-5326-01 7 77648648 77648648 G A MAGI2 Missense_Mutation p.S1451L 0.25 deleterious_low_confidence(0) unknown(0) TCGA-CQ-5326-01 7 80418764 80418764 A G SEMA3C Silent p.H404H 0.11 TCGA-CQ-5326-01 7 99669200 99669200 G C ZNF3 Missense_Mutation p.Q303E 0.16 deleterious(0.01) possibly_damaging(0.832) TCGA-CQ-5326-01 7 99694942 99694942 C G MCM7 Missense_Mutation p.D395H 0.19 tolerated(0.07) probably_damaging(0.981) TCGA-CQ-5326-01 8 110592224 110592224 G A SYBU Missense_Mutation p.P180S 0.14 tolerated(0.15) benign(0.076) TCGA-CQ-5326-01 8 126051188 126051188 C G KIAA0196 Missense_Mutation p.D990H 0.26 deleterious(0) probably_damaging(0.954) TCGA-CQ-5326-01 8 142238386 142238386 C T SLC45A4 5'UTR 0.20 TCGA-CQ-5326-01 8 144621295 144621295 G A ZC3H3 Missense_Mutation p.P81L 0.23 tolerated(0.62) benign(0.009) TCGA-CQ-5326-01 8 144776617 144776617 G A ZNF707 Missense_Mutation p.E345K 0.25 tolerated(0.21) benign(0.033) TCGA-CQ-5326-01 8 145011230 145011230 C A PLEC Missense_Mutation p.V255L 0.44 unknown(0) TCGA-CQ-5326-01 8 24811063 24811063 G A CTD-2168K21.2 5'Flank 0.39 TCGA-CQ-5326-01 8 80577108 80577108 G A STMN2 3'UTR 0.30 TCGA-CQ-5326-01 9 114986137 114986137 T C PTBP3 Silent p.T557T 0.47 TCGA-CQ-5326-01 9 130111290 130111290 G T GARNL3 Missense_Mutation p.D507Y 0.23 deleterious(0) probably_damaging(1) TCGA-CQ-5326-01 9 130828916 130828916 G A NAIF1 Silent p.L155L 0.07 TCGA-CQ-5326-01 9 131348114 131348114 G A SPTAN1 Missense_Mutation p.R883Q 0.24 tolerated(0.64) benign(0.295) TCGA-CQ-5326-01 9 134501394 134501394 G A RAPGEF1 Silent p.V540V 0.23 TCGA-CQ-5326-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.20 TCGA-CQ-5326-01 9 72755126 72755126 G C MAMDC2 Missense_Mutation p.D354H 0.21 deleterious(0.03) probably_damaging(1) TCGA-CQ-5326-01 9 72758548 72758548 G C MAMDC2 Missense_Mutation p.G406A 0.22 tolerated(0.07) probably_damaging(1) TCGA-CQ-5326-01 9 91973689 91973689 G A SECISBP2 Missense_Mutation p.E839K 0.14 deleterious(0) possibly_damaging(0.543) TCGA-CQ-5326-01 9 96054670 96054670 G A WNK2 Missense_Mutation p.V1710I 0.44 unknown(0) TCGA-CQ-5326-01 X 106391016 106391016 C T NUP62CL Silent p.%3D 0.46 TCGA-CQ-5326-01 X 125685629 125685629 G A DCAF12L1 Silent p.Y321Y 0.30 TCGA-CQ-5326-01 X 128710497 128710497 C T OCRL Nonsense_Mutation p.R695* 0.32 TCGA-CQ-5326-01 X 2838724 2838724 G A ARSD Silent p.N119N 0.51 TCGA-CQ-5326-01 X 48979986 48979986 C G GPKOW Silent p.R29R 0.46 TCGA-CQ-5326-01 X 77365367 77365367 C G PGK1 Silent p.V23V 0.37 TCGA-CQ-5326-01 X 95993660 95993660 C G DIAPH2 Missense_Mutation p.Q81E 0.40 tolerated(0.46) unknown(0) TCGA-CQ-5327-01 10 105796297 105796297 G C COL17A1 Missense_Mutation p.S1124C 0.21 probably_damaging(0.975) TCGA-CQ-5327-01 10 119303110 119303110 C T EMX2 Missense_Mutation p.S111L 0.25 tolerated(0.21) benign(0.069) TCGA-CQ-5327-01 10 124457552 124457553 - T C10orf120 Frame_Shift_Ins p.N235Kfs*28 0.24 TCGA-CQ-5327-01 10 13323083 13323083 C T PHYH Missense_Mutation p.D286N 0.20 tolerated(0.34) benign(0.014) TCGA-CQ-5327-01 10 25197546 25197546 C G PRTFDC1 Intron 0.35 TCGA-CQ-5327-01 10 267290 267290 T C ZMYND11 Silent p.V144V 0.14 TCGA-CQ-5327-01 10 35928655 35928655 G A FZD8 Missense_Mutation p.P568L 0.22 tolerated(0.05) benign(0.07) TCGA-CQ-5327-01 10 5781788 5781788 C T FAM208B Missense_Mutation p.S552F 0.26 tolerated(0.06) benign(0.151) TCGA-CQ-5327-01 10 93719794 93719794 G C BTAF1 Missense_Mutation p.M382I 0.24 tolerated(0.11) possibly_damaging(0.562) TCGA-CQ-5327-01 10 95791053 95791053 G C PLCE1 Missense_Mutation p.E84Q 0.31 deleterious_low_confidence(0.03) benign(0.221) TCGA-CQ-5327-01 11 114320724 114320724 C T REXO2 3'UTR 0.18 TCGA-CQ-5327-01 11 117075058 117075058 C T TAGLN Missense_Mutation p.R197W 0.23 deleterious(0.02) possibly_damaging(0.635) TCGA-CQ-5327-01 11 117869847 117869847 G A IL10RA Missense_Mutation p.E410K 0.17 tolerated(0.38) benign(0.231) TCGA-CQ-5327-01 11 118037736 118037736 C A SCN2B Missense_Mutation p.V172L 0.17 tolerated(0.64) benign(0.03) TCGA-CQ-5327-01 11 119181849 119181849 G A MCAM Silent p.L532L 0.14 TCGA-CQ-5327-01 11 11964241 11964241 T C USP47 Silent p.P823P 0.06 TCGA-CQ-5327-01 11 120979983 120979983 C - TECTA Frame_Shift_Del p.L89* 0.30 TCGA-CQ-5327-01 11 125891182 125891182 C T CDON Missense_Mutation p.G104S 0.13 deleterious(0.01) probably_damaging(1) TCGA-CQ-5327-01 11 129772280 129772280 C T PRDM10 Silent p.Q1137Q 0.25 TCGA-CQ-5327-01 11 18633881 18633881 G A SPTY2D1 Silent p.I622I 0.19 TCGA-CQ-5327-01 11 280967 280967 G A NLRP6 Silent p.T411T 0.23 TCGA-CQ-5327-01 11 46726882 46726882 C G ZNF408 Missense_Mutation p.I544M 0.28 deleterious(0) probably_damaging(0.999) TCGA-CQ-5327-01 11 4702859 4702859 T G OR51E2 3'UTR 0.16 TCGA-CQ-5327-01 11 5411115 5411115 C T OR51M1 Missense_Mutation p.R163W 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CQ-5327-01 11 55371308 55371308 G A OR4C11 Missense_Mutation p.P181L 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-CQ-5327-01 11 56185150 56185150 G C OR5R1 Missense_Mutation p.L187V 0.21 deleterious(0) probably_damaging(0.999) TCGA-CQ-5327-01 11 62289230 62289230 G C AHNAK Nonsense_Mutation p.S4220* 0.22 TCGA-CQ-5327-01 11 63990638 63990638 A T FERMT3 Missense_Mutation p.N601Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-CQ-5327-01 11 64521495 64521495 C T PYGM Silent p.A365A 0.27 TCGA-CQ-5327-01 11 65270662 65270662 G C MALAT1 RNA 0.29 TCGA-CQ-5327-01 11 66617476 66617476 C T PC Missense_Mutation p.V944M 0.11 deleterious(0) probably_damaging(0.951) TCGA-CQ-5327-01 11 70331881 70331881 G A SHANK2 Missense_Mutation p.T1507M 0.31 tolerated(0.06) possibly_damaging(0.791) TCGA-CQ-5327-01 11 74799942 74799942 G A OR2AT4 Missense_Mutation p.L273F 0.24 tolerated(0.28) possibly_damaging(0.653) TCGA-CQ-5327-01 11 75508295 75508295 G C DGAT2 Missense_Mutation p.E243Q 0.26 deleterious(0.01) probably_damaging(1) TCGA-CQ-5327-01 11 85779727 85779727 G A PICALM Silent p.H32H 0.11 TCGA-CQ-5327-01 11 86868385 86868385 C T TMEM135 Silent p.A133A 0.20 TCGA-CQ-5327-01 12 102025384 102025384 G A MYBPC1 Missense_Mutation p.E84K 0.15 tolerated(1) benign(0.007) TCGA-CQ-5327-01 12 112703016 112703016 G C HECTD4 Missense_Mutation p.S717C 0.22 possibly_damaging(0.639) TCGA-CQ-5327-01 12 121094058 121094058 G A CABP1 Intron 0.25 TCGA-CQ-5327-01 12 21794926 21794926 G A LDHB Silent p.S185S 0.18 TCGA-CQ-5327-01 12 33592483 33592483 T - SYT10 5'UTR 0.19 TCGA-CQ-5327-01 12 41374736 41374736 G C CNTN1 Silent p.L610L 0.18 TCGA-CQ-5327-01 12 50392997 50392997 C G RACGAP1 Missense_Mutation p.R269T 0.22 tolerated(0.34) benign(0.029) TCGA-CQ-5327-01 12 53040579 53040579 C G KRT2 Missense_Mutation p.A472P 0.24 deleterious(0) probably_damaging(0.996) TCGA-CQ-5327-01 12 53664560 53664560 G A ESPL1 Silent p.L449L 0.23 TCGA-CQ-5327-01 12 57919424 57919424 C A MBD6 Missense_Mutation p.P225T 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CQ-5327-01 12 62708688 62708688 G A USP15 Missense_Mutation p.D156N 0.20 deleterious(0) possibly_damaging(0.51) TCGA-CQ-5327-01 12 7639395 7639395 G A CD163 Missense_Mutation p.R720C 0.22 deleterious(0) probably_damaging(1) TCGA-CQ-5327-01 13 24876918 24876918 G A SPATA13 3'UTR 0.28 TCGA-CQ-5327-01 13 26436529 26436529 C G ATP8A2 Missense_Mutation p.P1056A 0.14 tolerated(0.44) probably_damaging(0.956) TCGA-CQ-5327-01 13 33701584 33701584 G A STARD13 Silent p.L616L 0.25 TCGA-CQ-5327-01 13 48612093 48612093 A G NUDT15 Intron 0.39 TCGA-CQ-5327-01 13 48612094 48612094 C G NUDT15 Intron 0.38 TCGA-CQ-5327-01 13 48612096 48612096 C G NUDT15 Intron 0.38 TCGA-CQ-5327-01 13 48881435 48881438 GAAG AAA RB1 Frame_Shift_Del p.E53Kfs*12 0.19 TCGA-CQ-5327-01 13 52586581 52586581 C T ALG11 Silent p.C9C 0.22 TCGA-CQ-5327-01 13 92101090 92101090 C T GPC5 Missense_Mutation p.A80V 0.23 tolerated(0.15) benign(0.163) TCGA-CQ-5327-01 14 103986629 103986629 G A CKB Missense_Mutation p.S266F 0.18 deleterious(0.03) benign(0.008) TCGA-CQ-5327-01 14 105174903 105174903 G A INF2 Silent p.R622R 0.27 TCGA-CQ-5327-01 14 23451250 23451250 G A AJUBA Nonsense_Mutation p.Q76* 0.26 TCGA-CQ-5327-01 14 23451383 23451383 G A AJUBA Silent p.P31P 0.24 TCGA-CQ-5327-01 14 24633337 24633337 G C IRF9 Missense_Mutation p.E215Q 0.22 tolerated(0.36) benign(0.095) TCGA-CQ-5327-01 14 58711603 58711603 C A PSMA3 5'UTR 0.25 TCGA-CQ-5327-01 14 70237755 70237755 G A SRSF5 Missense_Mutation p.E162K 0.21 tolerated(0.06) benign(0.101) TCGA-CQ-5327-01 15 63336307 63336307 G C TPM1 Missense_Mutation p.D66H 0.20 deleterious(0.02) possibly_damaging(0.848) TCGA-CQ-5327-01 15 73048650 73048650 G C ADPGK Missense_Mutation p.S261C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CQ-5327-01 15 81295306 81295306 G A MESDC1 Missense_Mutation p.V232M 0.20 deleterious(0) probably_damaging(0.928) TCGA-CQ-5327-01 16 1741947 1741947 C T HN1L Silent p.V99V 0.24 TCGA-CQ-5327-01 16 19548342 19548342 G A CCP110 Missense_Mutation p.E451K 0.15 tolerated(0.21) benign(0.04) TCGA-CQ-5327-01 16 21011751 21011751 G A DNAH3 Silent p.F2072F 0.29 TCGA-CQ-5327-01 16 23570850 23570850 G A UBFD1 Silent p.L139L 0.16 TCGA-CQ-5327-01 16 24820668 24820668 C T TNRC6A Intron 0.13 TCGA-CQ-5327-01 16 50667367 50667367 G C NKD1 Missense_Mutation p.R363T 0.21 deleterious(0.05) benign(0.28) TCGA-CQ-5327-01 16 67005131 67005131 G T CES3 Silent p.S400S 0.29 TCGA-CQ-5327-01 16 67662366 67662366 C G CTCF Missense_Mutation p.L538V 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-CQ-5327-01 16 67662427 67662427 C G CTCF Missense_Mutation p.S558C 0.32 deleterious(0.01) benign(0.035) TCGA-CQ-5327-01 16 67912724 67912724 C T EDC4 Silent p.L423L 0.27 TCGA-CQ-5327-01 17 18045516 18045516 C T MYO15A Silent p.L1925L 0.26 TCGA-CQ-5327-01 17 26715421 26715421 G A SARM1 Missense_Mutation p.E562K 0.16 tolerated(0.06) probably_damaging(0.962) TCGA-CQ-5327-01 17 39580458 39580458 C T KRT37 Silent p.E106E 0.19 TCGA-CQ-5327-01 17 40063716 40063716 G A ACLY Silent p.F242F 0.06 TCGA-CQ-5327-01 17 44061080 44061080 C G MAPT Missense_Mutation p.H304D 0.14 tolerated(0.46) benign(0.318) TCGA-CQ-5327-01 17 58235751 58235751 G A CA4 Missense_Mutation p.D230N 0.24 tolerated(0.4) benign(0.35) TCGA-CQ-5327-01 17 73831829 73831829 C T UNC13D Silent p.T542T 0.29 TCGA-CQ-5327-01 17 73998157 73998157 C T CDK3 Silent p.L83L 0.20 TCGA-CQ-5327-01 18 3129359 3129359 G C MYOM1 Missense_Mutation p.Q889E 0.19 tolerated(1) benign(0.001) TCGA-CQ-5327-01 18 58039474 58039474 C T MC4R Missense_Mutation p.D37N 0.25 tolerated(0.62) benign(0.01) TCGA-CQ-5327-01 18 64176484 64176484 C G CDH19 Splice_Site p.X526_splice 0.35 TCGA-CQ-5327-01 18 72180833 72180833 G A CNDP2 Missense_Mutation p.G261D 0.09 deleterious(0.03) possibly_damaging(0.591) TCGA-CQ-5327-01 18 7955287 7955287 C T PTPRM Missense_Mutation p.T336M 0.15 tolerated(0.07) benign(0.367) TCGA-CQ-5327-01 19 10747142 10747142 C T SLC44A2 Silent p.F459F 0.30 TCGA-CQ-5327-01 19 12721450 12721450 G A ZNF490 Silent p.L15L 0.33 TCGA-CQ-5327-01 19 13915816 13915816 C T ZSWIM4 Missense_Mutation p.S189F 0.09 deleterious(0) benign(0.173) TCGA-CQ-5327-01 19 14199324 14199324 G A SAMD1 Missense_Mutation p.R402C 0.19 deleterious(0) probably_damaging(0.997) TCGA-CQ-5327-01 19 16980676 16980676 G A SIN3B Missense_Mutation p.D770N 0.19 deleterious(0.03) benign(0.068) TCGA-CQ-5327-01 19 2213440 2213440 G A DOT1L Intron 0.21 TCGA-CQ-5327-01 19 22156351 22156351 T G ZNF208 Missense_Mutation p.K495N 0.20 deleterious(0.01) unknown(0) TCGA-CQ-5327-01 19 36357325 36357325 C T KIRREL2 Silent p.P686P 0.26 TCGA-CQ-5327-01 19 36558321 36558321 C T WDR62 Silent p.F225F 0.12 TCGA-CQ-5327-01 19 37440743 37440743 G T ZNF568 Missense_Mutation p.D230Y 0.16 deleterious(0.01) possibly_damaging(0.739) TCGA-CQ-5327-01 19 39299490 39299490 G A LGALS4 Missense_Mutation p.T78M 0.22 deleterious(0) probably_damaging(0.998) TCGA-CQ-5327-01 19 42729624 42729624 G A ZNF526 Missense_Mutation p.E357K 0.18 deleterious(0.02) possibly_damaging(0.448) TCGA-CQ-5327-01 19 43421931 43421931 G A PSG6 Missense_Mutation p.S5L 0.24 deleterious(0.02) possibly_damaging(0.69) TCGA-CQ-5327-01 19 45910392 45910392 G A CD3EAP Silent p.K21K 0.22 TCGA-CQ-5327-01 19 4817044 4817044 G A TICAM1 Missense_Mutation p.S449L 0.12 deleterious(0) probably_damaging(0.993) TCGA-CQ-5327-01 19 49206875 49206875 G A FUT2 Missense_Mutation p.R221Q 0.18 tolerated(0.14) benign(0.009) TCGA-CQ-5327-01 19 5131326 5131326 G A KDM4B Missense_Mutation p.E519K 0.22 benign(0.011) TCGA-CQ-5327-01 19 52033148 52033148 G A SIGLEC6 Missense_Mutation p.P281L 0.20 deleterious(0.05) possibly_damaging(0.679) TCGA-CQ-5327-01 19 52272800 52272800 C T FPR2 Missense_Mutation p.L297F 0.31 deleterious(0) probably_damaging(0.993) TCGA-CQ-5327-01 19 54189750 54189750 G A MIR519C RNA 0.23 TCGA-CQ-5327-01 19 56154207 56154207 C T ZNF580 Silent p.R111R 0.14 TCGA-CQ-5327-01 19 6495568 6495568 G A TUBB4A Silent p.A314A 0.18 TCGA-CQ-5327-01 19 7968931 7968931 C T MAP2K7 Silent p.I34I 0.26 TCGA-CQ-5327-01 19 9066948 9066948 G A MUC16 Missense_Mutation p.S6833L 0.14 unknown(0) TCGA-CQ-5327-01 1 11187151 11187151 C T MTOR Missense_Mutation p.M2089I 0.15 deleterious(0.02) benign(0.181) TCGA-CQ-5327-01 1 117690271 117690271 C A VTCN1 3'UTR 0.21 TCGA-CQ-5327-01 1 118583431 118583431 G C SPAG17 Missense_Mutation p.Q1030E 0.14 deleterious(0) possibly_damaging(0.832) TCGA-CQ-5327-01 1 145015938 145015938 C T RP11-326G21.1 5'Flank 0.05 TCGA-CQ-5327-01 1 152083791 152083791 C T TCHH Silent p.L634L 0.31 TCGA-CQ-5327-01 1 152277136 152277136 C T FLG Missense_Mutation p.R3409Q 0.22 unknown(0) TCGA-CQ-5327-01 1 156233278 156233278 G A SMG5 Nonsense_Mutation p.Q647* 0.10 TCGA-CQ-5327-01 1 157667754 157667754 C T FCRL3 Intron 0.23 TCGA-CQ-5327-01 1 161024455 161024455 T C ARHGAP30 Missense_Mutation p.K129R 0.20 tolerated(0.15) possibly_damaging(0.494) TCGA-CQ-5327-01 1 162326887 162326887 C G NOS1AP Silent p.L300L 0.26 TCGA-CQ-5327-01 1 16475129 16475130 CA - EPHA2 Frame_Shift_Del p.V189Gfs*24 0.31 TCGA-CQ-5327-01 1 179084052 179084052 C T ABL2 Missense_Mutation p.E508K 0.22 deleterious(0.02) possibly_damaging(0.596) TCGA-CQ-5327-01 1 202992016 202992016 C T TMEM183A Missense_Mutation p.H327Y 0.19 tolerated(0.28) benign(0.249) TCGA-CQ-5327-01 1 206224835 206224835 G A AVPR1B Missense_Mutation p.R132H 0.19 deleterious(0) probably_damaging(1) TCGA-CQ-5327-01 1 214556663 214556663 C T PTPN14 Missense_Mutation p.M845I 0.22 tolerated(0.41) benign(0) TCGA-CQ-5327-01 1 234743542 234743543 - CC IRF2BP2 Frame_Shift_Ins p.P369Gfs*24 0.17 TCGA-CQ-5327-01 1 241850813 241850813 C T WDR64 Missense_Mutation p.S287L 0.18 deleterious(0) benign(0.103) TCGA-CQ-5327-01 1 247492661 247492661 C T ZNF496 Missense_Mutation p.E74K 0.20 deleterious(0.02) probably_damaging(0.914) TCGA-CQ-5327-01 1 29602008 29602008 G A PTPRU Missense_Mutation p.R398H 0.51 deleterious(0) probably_damaging(0.993) TCGA-CQ-5327-01 1 32667518 32667518 G C CCDC28B 5'UTR 0.17 TCGA-CQ-5327-01 1 34049245 34049245 C G CSMD2 Missense_Mutation p.D2415H 0.17 deleterious(0) probably_damaging(0.981) TCGA-CQ-5327-01 1 43630162 43630162 C T EBNA1BP2 Silent p.K346K 0.15 TCGA-CQ-5327-01 1 47278285 47278285 G A CYP4B1 Missense_Mutation p.R162H 0.30 tolerated(0.28) benign(0.004) TCGA-CQ-5327-01 1 89579771 89579771 C T GBP2 Silent p.E359E 0.19 TCGA-CQ-5327-01 20 1961196 1961196 G A PDYN Missense_Mutation p.R180C 0.27 deleterious(0) probably_damaging(1) TCGA-CQ-5327-01 20 2375141 2375141 C T TGM6 Silent p.G17G 0.09 TCGA-CQ-5327-01 20 3218335 3218335 C G SLC4A11 Intron 0.07 TCGA-CQ-5327-01 20 33329679 33329679 C T NCOA6 Missense_Mutation p.D1461N 0.21 benign(0.016) TCGA-CQ-5327-01 20 46256365 46256365 G A NCOA3 Missense_Mutation p.R198H 0.27 deleterious(0) probably_damaging(0.968) TCGA-CQ-5327-01 20 60883183 60883183 G A ADRM1 Silent p.P321P 0.24 TCGA-CQ-5327-01 20 9547019 9547019 G A PAK7 Nonsense_Mutation p.R335* 0.20 TCGA-CQ-5327-01 21 31812666 31812666 T A KRTAP15-1 Silent p.S7S 0.18 TCGA-CQ-5327-01 21 33067131 33067131 G A SCAF4 Nonsense_Mutation p.Q411* 0.21 TCGA-CQ-5327-01 21 39671493 39671493 C G KCNJ15 Missense_Mutation p.H104D 0.23 deleterious(0) benign(0.197) TCGA-CQ-5327-01 22 21322208 21322208 G A AIFM3 5'UTR 0.26 TCGA-CQ-5327-01 22 26118286 26118286 G A ADRBK2 Missense_Mutation p.E646K 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.539) TCGA-CQ-5327-01 22 30688279 30688279 C G TBC1D10A 3'UTR 0.24 TCGA-CQ-5327-01 22 37407206 37407206 G A TST Silent p.V252V 0.13 TCGA-CQ-5327-01 22 41547912 41547912 C T EP300 Nonsense_Mutation p.Q965* 0.11 TCGA-CQ-5327-01 22 43924776 43924776 G C EFCAB6 Nonsense_Mutation p.S1488* 0.09 TCGA-CQ-5327-01 22 50659487 50659487 G A TUBGCP6 Missense_Mutation p.R1101W 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-CQ-5327-01 2 101624355 101624355 G A TBC1D8 Silent p.I1117I 0.23 TCGA-CQ-5327-01 2 109399112 109399112 G A RANBP2 Missense_Mutation p.A3055T 0.20 tolerated(0.25) benign(0.01) TCGA-CQ-5327-01 2 136590728 136590728 C G LCT Missense_Mutation p.D225H 0.23 tolerated(0.61) benign(0.016) TCGA-CQ-5327-01 2 143799685 143799685 T C KYNU Missense_Mutation p.Y448H 0.16 tolerated(0.58) benign(0.021) TCGA-CQ-5327-01 2 15519752 15519752 G C NBAS Silent p.L1188L 0.26 TCGA-CQ-5327-01 2 160826691 160826692 - C PLA2R1 Frame_Shift_Ins p.L877Tfs*8 0.15 TCGA-CQ-5327-01 2 162820729 162820729 G T SLC4A10 Missense_Mutation p.V983L 0.24 deleterious(0) possibly_damaging(0.544) TCGA-CQ-5327-01 2 170377507 170377507 G C KLHL41 Missense_Mutation p.D567H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CQ-5327-01 2 179427277 179427277 G C TTN Missense_Mutation p.S27861C 0.16 TCGA-CQ-5327-01 2 179638442 179638442 C G TTN Silent p.V2447V 0.12 TCGA-CQ-5327-01 2 185801352 185801352 C A ZNF804A Missense_Mutation p.T410N 0.24 tolerated(0.55) benign(0.11) TCGA-CQ-5327-01 2 191155142 191155142 T C HIBCH Missense_Mutation p.N125S 0.32 deleterious(0.01) benign(0.02) TCGA-CQ-5327-01 2 201436564 201436564 G A SGOL2 Missense_Mutation p.E499K 0.15 tolerated(0.07) benign(0.409) TCGA-CQ-5327-01 2 202131502 202131505 TTTC - CASP8 Frame_Shift_Del p.I157Mfs*14 0.21 TCGA-CQ-5327-01 2 220098944 220098944 G A ANKZF1 Missense_Mutation p.E380K 0.15 tolerated(0.1) benign(0.003) TCGA-CQ-5327-01 2 235962446 235962446 G A SH3BP4 Missense_Mutation p.D960N 0.12 deleterious_low_confidence(0.04) probably_damaging(0.949) TCGA-CQ-5327-01 2 26533572 26533572 G C GPR113 Silent p.L1008L 0.38 TCGA-CQ-5327-01 2 26533788 26533788 G A GPR113 Silent p.I936I 0.43 TCGA-CQ-5327-01 2 27880482 27880482 G C SUPT7L Silent p.L158L 0.21 TCGA-CQ-5327-01 2 27907945 27907945 G A SLC4A1AP Missense_Mutation p.M639I 0.28 tolerated(0.2) benign(0.003) TCGA-CQ-5327-01 2 27907958 27907958 G A SLC4A1AP Missense_Mutation p.E644K 0.33 tolerated(0.47) benign(0.342) TCGA-CQ-5327-01 2 44128664 44128664 C G LRPPRC Splice_Site p.X1122_splice 0.22 TCGA-CQ-5327-01 2 55561402 55561402 A T CCDC88A Nonsense_Mutation p.L852* 0.17 TCGA-CQ-5327-01 2 70315832 70315832 G A PCBP1 Silent p.V319V 0.30 TCGA-CQ-5327-01 2 7035928 7035928 G A RSAD2 Missense_Mutation p.R314K 0.20 tolerated(0.4) benign(0.001) TCGA-CQ-5327-01 2 73492491 73492491 C T FBXO41 Missense_Mutation p.E495K 0.24 tolerated(0.13) benign(0.187) TCGA-CQ-5327-01 2 97035190 97035190 C G NCAPH Silent p.L706L 0.25 TCGA-CQ-5327-01 2 97035215 97035215 C G NCAPH Missense_Mutation p.L715V 0.24 deleterious(0) probably_damaging(0.98) TCGA-CQ-5327-01 3 11300975 11300975 C T HRH1 Silent p.N84N 0.17 TCGA-CQ-5327-01 3 121207251 121207251 C T POLQ Missense_Mutation p.M1509I 0.23 tolerated(0.12) benign(0.003) TCGA-CQ-5327-01 3 121207996 121207996 C T POLQ Missense_Mutation p.R1261K 0.20 tolerated_low_confidence(1) benign(0.003) TCGA-CQ-5327-01 3 123987636 123987636 C T KALRN Missense_Mutation p.S166F 0.12 deleterious(0) probably_damaging(0.984) TCGA-CQ-5327-01 3 124380748 124380748 G A KALRN Missense_Mutation p.M197I 0.23 deleterious(0.01) possibly_damaging(0.752) TCGA-CQ-5327-01 3 132257140 132257140 G A DNAJC13 3'UTR 0.31 TCGA-CQ-5327-01 3 13655526 13655526 G A FBLN2 Missense_Mutation p.E531K 0.22 deleterious(0) probably_damaging(0.916) TCGA-CQ-5327-01 3 137942337 137942337 C G ARMC8 Missense_Mutation p.L87V 0.20 deleterious(0) probably_damaging(0.998) TCGA-CQ-5327-01 3 140397066 140397066 G C TRIM42 5'UTR 0.15 TCGA-CQ-5327-01 3 148563304 148563304 G A CPB1 Missense_Mutation p.R291H 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-CQ-5327-01 3 181430864 181430864 C A SOX2 Missense_Mutation p.S239Y 0.21 deleterious(0.01) benign(0.006) TCGA-CQ-5327-01 3 183910898 183910898 G A ABCF3 Missense_Mutation p.E587K 0.24 tolerated(0.42) benign(0.166) TCGA-CQ-5327-01 3 184100495 184100495 C T CHRD Silent p.L305L 0.20 TCGA-CQ-5327-01 3 194362875 194362875 C T LSG1 Silent p.A633A 0.21 TCGA-CQ-5327-01 3 196664450 196664450 G C NCBP2 Missense_Mutation p.I110M 0.26 deleterious(0.02) benign(0.046) TCGA-CQ-5327-01 3 37034418 37034418 C T EPM2AIP1 Missense_Mutation p.E51K 0.20 deleterious(0.01) probably_damaging(0.965) TCGA-CQ-5327-01 3 38266161 38266161 A C OXSR1 Missense_Mutation p.I268L 0.35 tolerated(0.12) benign(0.081) TCGA-CQ-5327-01 3 39228921 39228921 G A XIRP1 Silent p.G672G 0.16 TCGA-CQ-5327-01 3 48475178 48475178 C A CCDC51 Missense_Mutation p.R139L 0.27 deleterious(0) probably_damaging(0.993) TCGA-CQ-5327-01 3 49394754 49394754 C G GPX1 3'UTR 0.24 TCGA-CQ-5327-01 3 5025027 5025027 G A BHLHE40 Missense_Mutation p.D297N 0.12 tolerated(0.14) benign(0.089) TCGA-CQ-5327-01 3 64084754 64084754 C A PRICKLE2 Missense_Mutation p.Q836H 0.27 tolerated(0.74) benign(0.02) TCGA-CQ-5327-01 3 64619398 64619398 G A ADAMTS9 Missense_Mutation p.R672C 0.15 deleterious(0) probably_damaging(0.972) TCGA-CQ-5327-01 4 102751026 102751026 G C BANK1 Missense_Mutation p.L44F 0.08 deleterious(0) probably_damaging(0.999) TCGA-CQ-5327-01 4 104640753 104640753 G A TACR3 Missense_Mutation p.S27L 0.19 deleterious_low_confidence(0.01) benign(0.005) TCGA-CQ-5327-01 4 134076091 134076091 G A PCDH10 Missense_Mutation p.D904N 0.30 tolerated(0.13) probably_damaging(0.995) TCGA-CQ-5327-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.20 deleterious(0.03) probably_damaging(1) TCGA-CQ-5327-01 4 178272586 178272586 C T NEIL3 Missense_Mutation p.H308Y 0.29 tolerated(1) benign(0.001) TCGA-CQ-5327-01 4 17847407 17847407 C G NCAPG 3'Flank 0.29 TCGA-CQ-5327-01 4 184367411 184367411 C T CDKN2AIP Missense_Mutation p.R192W 0.12 deleterious(0.01) unknown(0) TCGA-CQ-5327-01 4 187531171 187531171 T A FAT1 Splice_Site p.X3285_splice 0.29 TCGA-CQ-5327-01 4 187541129 187541129 A C FAT1 Missense_Mutation p.V2204G 0.22 possibly_damaging(0.903) TCGA-CQ-5327-01 4 187541201 187541201 G A FAT1 Missense_Mutation p.P2180L 0.15 probably_damaging(1) TCGA-CQ-5327-01 4 36230305 36230305 C G ARAP2 Silent p.V268V 0.20 TCGA-CQ-5327-01 4 39482422 39482422 G A LIAS 3'Flank 0.34 TCGA-CQ-5327-01 4 46043203 46043203 A G GABRG1 Silent p.D400D 0.29 TCGA-CQ-5327-01 4 55968137 55968137 G A KDR Silent p.D731D 0.22 TCGA-CQ-5327-01 4 56310880 56310880 C G CLOCK Missense_Mutation p.E538Q 0.20 tolerated(1) benign(0.145) TCGA-CQ-5327-01 4 73414358 73414358 G C ADAMTS3 Missense_Mutation p.S114C 0.21 deleterious(0.02) possibly_damaging(0.676) TCGA-CQ-5327-01 4 8230222 8230222 C T SH3TC1 Missense_Mutation p.S934L 0.31 deleterious(0.02) possibly_damaging(0.876) TCGA-CQ-5327-01 5 132159668 132159668 G A SHROOM1 Missense_Mutation p.S562F 0.36 deleterious(0.03) benign(0.192) TCGA-CQ-5327-01 5 138266343 138266343 G A CTNNA1 Missense_Mutation p.R731Q 0.20 deleterious(0.03) probably_damaging(0.947) TCGA-CQ-5327-01 5 140250460 140250460 C T PCDHA11 Missense_Mutation p.A591V 0.40 deleterious_low_confidence(0.01) benign(0.177) TCGA-CQ-5327-01 5 140800862 140800862 C T PCDHGA11 Missense_Mutation p.T23M 0.13 tolerated_low_confidence(0.21) benign(0.202) TCGA-CQ-5327-01 5 149677914 149677914 G A ARSI Silent p.F191F 0.18 TCGA-CQ-5327-01 5 150946494 150946494 G T FAT2 Missense_Mutation p.P667T 0.18 benign(0.016) TCGA-CQ-5327-01 5 150946976 150946976 G A FAT2 Missense_Mutation p.S506F 0.14 probably_damaging(0.936) TCGA-CQ-5327-01 5 167812240 167812240 G A WWC1 Missense_Mutation p.R85Q 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-5327-01 5 169503008 169503008 C T DOCK2 Nonsense_Mutation p.R1596* 0.28 TCGA-CQ-5327-01 5 175523835 175523835 G A FAM153B Missense_Mutation p.E48K 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.502) TCGA-CQ-5327-01 5 42718786 42718786 G A GHR Missense_Mutation p.D393N 0.22 deleterious(0) probably_damaging(1) TCGA-CQ-5327-01 5 43040059 43040060 - GAAC ANXA2R Frame_Shift_Ins p.E31Ffs*24 0.28 TCGA-CQ-5327-01 5 482690 482690 G C SLC9A3 Missense_Mutation p.I443M 0.17 deleterious(0) probably_damaging(0.966) TCGA-CQ-5327-01 5 50055555 50055555 G A PARP8 Missense_Mutation p.R88K 0.16 tolerated_low_confidence(0.17) benign(0.001) TCGA-CQ-5327-01 5 58289223 58289223 C G PDE4D Missense_Mutation p.E331Q 0.22 deleterious_low_confidence(0.01) benign(0.318) TCGA-CQ-5327-01 5 65339965 65339965 G A ERBB2IP Missense_Mutation p.E477K 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-5327-01 5 82554540 82554540 G C XRCC4 Intron 0.28 TCGA-CQ-5327-01 5 90103466 90103466 T C GPR98 Missense_Mutation p.W4962R 0.24 benign(0) TCGA-CQ-5327-01 6 111678329 111678329 C G REV3L Splice_Site p.X2358_splice 0.22 TCGA-CQ-5327-01 6 117047696 117047696 G C KPNA5 Missense_Mutation p.E388D 0.25 tolerated(0.49) benign(0.003) TCGA-CQ-5327-01 6 138734315 138734315 G C HEBP2 3'UTR 0.50 TCGA-CQ-5327-01 6 142764689 142764689 G A GPR126 3'UTR 0.11 TCGA-CQ-5327-01 6 161575246 161575246 C G AGPAT4 Missense_Mutation p.E149Q 0.15 deleterious(0.01) probably_damaging(0.948) TCGA-CQ-5327-01 6 166580264 166580264 G A T Missense_Mutation p.A96V 0.08 tolerated(0.15) benign(0.158) TCGA-CQ-5327-01 6 170592567 170592569 CTT - DLL1 In_Frame_Del p.K600del 0.18 TCGA-CQ-5327-01 6 26377098 26377098 G A BTN3A2 3'UTR 0.15 TCGA-CQ-5327-01 6 26452578 26452578 C T BTN3A3 Missense_Mutation p.S565F 0.32 tolerated(0.65) benign(0) TCGA-CQ-5327-01 6 30037047 30037047 C G PPP1R11 Missense_Mutation p.D115E 0.17 tolerated(0.26) unknown(0) TCGA-CQ-5327-01 6 33636878 33636878 G A ITPR3 Missense_Mutation p.A712T 0.08 deleterious(0.02) possibly_damaging(0.858) TCGA-CQ-5327-01 6 41740533 41740533 C T FRS3 Intron 0.24 TCGA-CQ-5327-01 6 43230734 43230734 C A TTBK1 Silent p.V544V 0.48 TCGA-CQ-5327-01 6 43400148 43400148 G - ABCC10 Frame_Shift_Del p.A144Lfs*4 0.16 TCGA-CQ-5327-01 6 53761313 53761313 C T LRRC1 Missense_Mutation p.S155L 0.21 tolerated(0.06) probably_damaging(0.925) TCGA-CQ-5327-01 6 56483703 56483704 - G DST Intron 0.18 TCGA-CQ-5327-01 6 87725456 87725456 C T HTR1E Missense_Mutation p.T135M 0.31 deleterious(0) probably_damaging(0.998) TCGA-CQ-5327-01 7 100345237 100345237 C G ZAN Silent p.V332V 0.23 TCGA-CQ-5327-01 7 100346010 100346010 C T ZAN Missense_Mutation p.S389F 0.20 probably_damaging(0.931) TCGA-CQ-5327-01 7 1012890 1012890 G A COX19 Missense_Mutation p.L41F 0.12 deleterious(0) probably_damaging(1) TCGA-CQ-5327-01 7 102113555 102113555 G A LRWD1 3'UTR 0.15 TCGA-CQ-5327-01 7 103151303 103151303 A G RELN Missense_Mutation p.F2757L 0.22 deleterious(0.01) probably_damaging(0.956) TCGA-CQ-5327-01 7 105183014 105183014 C G RINT1 Missense_Mutation p.L145V 0.35 deleterious(0) possibly_damaging(0.849) TCGA-CQ-5327-01 7 107875082 107875082 C T NRCAM Missense_Mutation p.D59N 0.24 deleterious(0) probably_damaging(0.997) TCGA-CQ-5327-01 7 117227829 117227829 C A CFTR Missense_Mutation p.L541I 0.40 tolerated(0.44) benign(0.006) TCGA-CQ-5327-01 7 135292096 135292096 C T NUP205 Nonsense_Mutation p.Q1058* 0.36 TCGA-CQ-5327-01 7 137075931 137075931 C A DGKI 3'UTR 0.14 TCGA-CQ-5327-01 7 150779330 150779330 C T TMUB1 Silent p.L107L 0.24 TCGA-CQ-5327-01 7 21750198 21750198 C G DNAH11 Silent p.L2244L 0.17 TCGA-CQ-5327-01 7 22259497 22259499 CTC - RAPGEF5 In_Frame_Del p.E175del 0.16 TCGA-CQ-5327-01 7 30830790 30830790 C T FAM188B Missense_Mutation p.H225Y 0.23 deleterious(0) benign(0.016) TCGA-CQ-5327-01 7 31918650 31918650 C G PDE1C Missense_Mutation p.K188N 0.25 deleterious(0) possibly_damaging(0.854) TCGA-CQ-5327-01 7 48237849 48237849 G A ABCA13 Missense_Mutation p.R60Q 0.27 probably_damaging(0.923) TCGA-CQ-5327-01 7 48284261 48284261 C G ABCA13 Missense_Mutation p.L451V 0.17 possibly_damaging(0.448) TCGA-CQ-5327-01 7 92146808 92146808 G C PEX1 Missense_Mutation p.P341A 0.24 deleterious(0) probably_damaging(0.945) TCGA-CQ-5327-01 8 11152790 11152790 G A MTMR9 Silent p.L90L 0.12 TCGA-CQ-5327-01 8 121381598 121381598 C T COL14A1 Missense_Mutation p.P1729S 0.23 deleterious(0.04) benign(0.063) TCGA-CQ-5327-01 8 144997457 144997457 C T PLEC Missense_Mutation p.A2351T 0.29 benign(0.074) TCGA-CQ-5327-01 8 22058705 22058706 - C BMP1 Intron 0.21 TCGA-CQ-5327-01 8 24256527 24256527 G T ADAMDEC1 Missense_Mutation p.K301N 0.24 deleterious(0) probably_damaging(0.933) TCGA-CQ-5327-01 8 57025568 57025568 G A MOS Missense_Mutation p.A325V 0.20 tolerated(0.26) benign(0.098) TCGA-CQ-5327-01 8 67808488 67808488 C T MCMDC2 Nonsense_Mutation p.Q455* 0.16 TCGA-CQ-5327-01 8 72935272 72935272 C G TRPA1 Missense_Mutation p.E1077Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-CQ-5327-01 8 95902690 95902690 C T CCNE2 Missense_Mutation p.D136N 0.18 tolerated(0.49) benign(0.006) TCGA-CQ-5327-01 9 124091231 124091231 A G GSN Missense_Mutation p.K660E 0.18 tolerated(1) possibly_damaging(0.451) TCGA-CQ-5327-01 9 13193230 13193230 G A MPDZ Missense_Mutation p.S580F 0.29 deleterious(0) probably_damaging(0.998) TCGA-CQ-5327-01 9 134351594 134351594 G C PRRC2B Missense_Mutation p.E1360Q 0.26 deleterious(0.01) possibly_damaging(0.752) TCGA-CQ-5327-01 9 17135053 17135053 C T CNTLN 5'UTR 0.47 TCGA-CQ-5327-01 9 34286638 34286638 C G KIF24 Missense_Mutation p.D398H 0.13 deleterious(0) benign(0.314) TCGA-CQ-5327-01 9 34976157 34976157 C T KIAA1045 Silent p.I191I 0.26 TCGA-CQ-5327-01 9 40716111 40716111 C T FAM74A3 RNA 0.13 TCGA-CQ-5327-01 9 73225627 73225627 C G TRPM3 Missense_Mutation p.K843N 0.11 deleterious(0.03) probably_damaging(0.95) TCGA-CQ-5327-01 9 88650317 88650317 G A GOLM1 Silent p.D327D 0.22 TCGA-CQ-5327-01 X 111874751 111874751 G C LHFPL1 Missense_Mutation p.S187C 0.21 deleterious(0) probably_damaging(0.99) TCGA-CQ-5327-01 X 123554626 123554626 G C TENM1 Missense_Mutation p.S1506C 0.27 deleterious(0.02) probably_damaging(0.971) TCGA-CQ-5327-01 X 150349840 150349840 C G GPR50 Silent p.T595T 0.13 TCGA-CQ-5327-01 X 151303720 151303720 C T MAGEA10 Missense_Mutation p.D125N 0.24 tolerated(0.35) benign(0.022) TCGA-CQ-5327-01 X 153640369 153640369 C T DNASE1L1 5'UTR 0.30 TCGA-CQ-5327-01 X 54971913 54971913 G A PFKFB1 Nonsense_Mutation p.R353* 0.24 TCGA-CQ-5327-01 X 68058611 68058611 G A EFNB1 Missense_Mutation p.D94N 0.30 tolerated(0.2) benign(0.257) TCGA-CQ-5327-01 X 83127918 83127918 G C CYLC1 Missense_Mutation p.E68Q 0.13 deleterious(0.01) probably_damaging(0.969) TCGA-CQ-5329-01 10 127724762 127724762 C T ADAM12 Missense_Mutation p.V831I 0.08 tolerated(0.24) benign(0.014) TCGA-CQ-5329-01 10 99349624 99349624 G A C10orf62 5'UTR 0.07 TCGA-CQ-5329-01 11 117054508 117054508 C T SIDT2 Missense_Mutation p.P239L 0.25 deleterious(0.01) possibly_damaging(0.572) TCGA-CQ-5329-01 11 121445041 121445056 CTGTGGAGACAACAGT ACAGG SORL1 Frame_Shift_Del p.D1143Efs*4 0.09 TCGA-CQ-5329-01 11 12278373 12278373 C T MICAL2 Silent p.S999S 0.17 TCGA-CQ-5329-01 11 30032556 30032556 G A KCNA4 Missense_Mutation p.P557L 0.50 deleterious(0) probably_damaging(0.998) TCGA-CQ-5329-01 11 5809766 5809766 A G OR52N1 Missense_Mutation p.I94T 0.20 deleterious(0.01) benign(0.049) TCGA-CQ-5329-01 12 52758101 52758101 C T KRT85 Missense_Mutation p.V227I 0.25 tolerated(0.06) probably_damaging(0.993) TCGA-CQ-5329-01 12 96288808 96288808 G T CCDC38 Nonsense_Mutation p.S244* 0.36 TCGA-CQ-5329-01 13 101759893 101759893 G A NALCN Nonsense_Mutation p.R842* 0.28 TCGA-CQ-5329-01 13 67205527 67205527 G A PCDH9 Missense_Mutation p.T1052M 0.56 deleterious(0) possibly_damaging(0.818) TCGA-CQ-5329-01 16 312195 312195 C A ITFG3 Missense_Mutation p.T271K 0.13 tolerated(0.19) possibly_damaging(0.471) TCGA-CQ-5329-01 17 1675210 1675210 T C SERPINF1 Missense_Mutation p.Y162H 0.15 deleterious(0) probably_damaging(1) TCGA-CQ-5329-01 17 3181737 3181737 C T OR3A2 Missense_Mutation p.A165T 0.19 tolerated(0.05) benign(0.126) TCGA-CQ-5329-01 17 3850835 3850835 G A ATP2A3 Silent p.I315I 0.66 TCGA-CQ-5329-01 17 7132326 7132326 G A DVL2 Silent p.D332D 0.70 TCGA-CQ-5329-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.47 tolerated(0.13) possibly_damaging(0.631) TCGA-CQ-5329-01 17 7910382 7910382 G A GUCY2D Silent p.L461L 0.21 TCGA-CQ-5329-01 18 50832067 50832067 C A DCC Missense_Mutation p.N677K 0.23 tolerated(0.06) benign(0.225) TCGA-CQ-5329-01 19 6908712 6908712 G A EMR1 Missense_Mutation p.A351T 0.25 tolerated(0.94) benign(0.006) TCGA-CQ-5329-01 1 167868860 167868860 G A ADCY10 Missense_Mutation p.A148V 0.29 deleterious(0) possibly_damaging(0.744) TCGA-CQ-5329-01 22 22569614 22569614 C A IGLV10-54 Missense_Mutation p.D102E 0.07 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-CQ-5329-01 2 200298060 200298060 C A SATB2 Splice_Site p.X116_splice 0.29 TCGA-CQ-5329-01 2 226447697 226447697 C T NYAP2 Missense_Mutation p.R522C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CQ-5329-01 2 27822848 27822848 C T ZNF512 Missense_Mutation p.R129W 0.47 deleterious(0) probably_damaging(0.99) TCGA-CQ-5329-01 3 184428979 184428983 TCGGA - MAGEF1 Nonsense_Mutation p.Y209* 0.39 TCGA-CQ-5329-01 4 96761394 96761394 C T PDHA2 Silent p.D31D 0.16 TCGA-CQ-5329-01 5 140745185 140745185 C A PCDHGA5 Missense_Mutation p.P430T 0.28 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CQ-5329-01 6 159653380 159653380 G A FNDC1 Silent p.A612A 0.31 TCGA-CQ-5329-01 6 39271892 39271892 G A KCNK17 Missense_Mutation p.R177W 0.26 deleterious(0.03) benign(0.01) TCGA-CQ-5329-01 6 43471425 43471425 G A TJAP1 Missense_Mutation p.R187Q 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-CQ-5329-01 6 76023395 76023395 C T FILIP1 Missense_Mutation p.R718Q 0.31 tolerated(0.2) benign(0.341) TCGA-CQ-5329-01 7 142459656 142459656 A G PRSS1 Missense_Mutation p.I78V 0.05 tolerated(0.09) benign(0.073) TCGA-CQ-5329-01 7 76984647 76984647 C A GSAP Silent p.L407L 0.23 TCGA-CQ-5329-01 9 104048520 104048520 T A LPPR1 Splice_Site p.X129_splice 0.27 TCGA-CQ-5329-01 9 139393579 139393579 C T NOTCH1 Missense_Mutation p.A2023T 0.57 deleterious(0) probably_damaging(0.999) TCGA-CQ-5329-01 9 85950554 85950554 G A FRMD3 Missense_Mutation p.A158V 0.28 deleterious(0) benign(0.133) TCGA-CQ-5330-01 10 104445679 104445679 G A ARL3 Missense_Mutation p.T132I 0.23 deleterious(0.02) benign(0.394) TCGA-CQ-5330-01 10 43282672 43282672 G A BMS1 Missense_Mutation p.D142N 0.11 deleterious(0) probably_damaging(0.999) TCGA-CQ-5330-01 10 45430313 45430313 A G TMEM72 Missense_Mutation p.K187E 0.22 deleterious(0.05) possibly_damaging(0.886) TCGA-CQ-5330-01 10 61554228 61554228 T C CCDC6 Intron 0.19 TCGA-CQ-5330-01 10 73578462 73578462 G A PSAP Missense_Mutation p.S484L 0.06 tolerated(0.05) benign(0.022) TCGA-CQ-5330-01 11 125359382 125359382 C A FEZ1 Nonsense_Mutation p.E98* 0.09 TCGA-CQ-5330-01 11 2191095 2191095 G A TH Missense_Mutation p.R64W 0.21 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-CQ-5330-01 11 62290908 62290908 T C AHNAK Missense_Mutation p.M3661V 0.24 benign(0.06) TCGA-CQ-5330-01 11 64521023 64521023 C T PYGM Silent p.A457A 0.38 TCGA-CQ-5330-01 12 104340443 104340443 C T HSP90B1 Missense_Mutation p.P692L 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-5330-01 12 118199176 118199176 T C KSR2 Missense_Mutation p.Y209C 0.24 tolerated(0.18) benign(0.19) TCGA-CQ-5330-01 15 68582025 68582025 A G FEM1B Missense_Mutation p.H110R 0.29 tolerated(0.64) benign(0.258) TCGA-CQ-5330-01 16 20999384 20999384 C T DNAH3 Missense_Mutation p.R2202Q 0.24 deleterious(0) probably_damaging(1) TCGA-CQ-5330-01 16 47644777 47644777 G A PHKB Silent p.Q468Q 0.26 TCGA-CQ-5330-01 16 53686477 53686477 C A RPGRIP1L Missense_Mutation p.G708C 0.26 deleterious(0) probably_damaging(0.999) TCGA-CQ-5330-01 16 71663404 71663404 C T MARVELD3 Intron 0.10 TCGA-CQ-5330-01 16 88958773 88958773 G T CBFA2T3 Missense_Mutation p.P167Q 0.44 deleterious(0) probably_damaging(0.979) TCGA-CQ-5330-01 17 30796051 30796051 C T PSMD11 Silent p.D161D 0.29 TCGA-CQ-5330-01 17 42083499 42083499 T A NAGS Missense_Mutation p.V270E 0.35 deleterious(0) probably_damaging(0.926) TCGA-CQ-5330-01 17 7577142 7577142 C T TP53 Missense_Mutation p.G266R 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-CQ-5330-01 18 28934345 28934345 C T DSG1 Missense_Mutation p.P729L 0.36 deleterious(0) probably_damaging(0.981) TCGA-CQ-5330-01 18 51892104 51892104 C T C18orf54 Silent p.P252P 0.24 TCGA-CQ-5330-01 18 72999367 72999367 G A TSHZ1 Missense_Mutation p.A624T 0.29 tolerated(0.42) benign(0.005) TCGA-CQ-5330-01 19 10791116 10791116 G A ILF3 Silent p.A318A 0.13 TCGA-CQ-5330-01 19 22157207 22157207 A G ZNF208 Missense_Mutation p.F210S 0.27 deleterious(0) possibly_damaging(0.894) TCGA-CQ-5330-01 19 38877088 38877088 C T GGN Missense_Mutation p.G272R 0.16 tolerated_low_confidence(0.18) unknown(0) TCGA-CQ-5330-01 19 46879819 46879819 A G PPP5C Silent p.K207K 0.30 TCGA-CQ-5330-01 19 52619805 52619805 C T ZNF616 Silent p.Q204Q 0.31 TCGA-CQ-5330-01 19 9010979 9010979 G T MUC16 Missense_Mutation p.P12980H 0.27 probably_damaging(0.986) TCGA-CQ-5330-01 1 118629569 118629569 G A SPAG17 Silent p.D474D 0.32 TCGA-CQ-5330-01 1 161160954 161160954 G A ADAMTS4 Missense_Mutation p.R830W 0.28 deleterious(0) possibly_damaging(0.573) TCGA-CQ-5330-01 1 175375720 175375720 G A TNR Missense_Mutation p.S44L 0.15 tolerated_low_confidence(0.21) benign(0.001) TCGA-CQ-5330-01 1 182026983 182026983 G A ZNF648 Missense_Mutation p.P55S 0.14 tolerated_low_confidence(0.18) benign(0.001) TCGA-CQ-5330-01 1 229568748 229568748 G A ACTA1 Missense_Mutation p.R39C 0.14 tolerated_low_confidence(0.06) probably_damaging(0.986) TCGA-CQ-5330-01 1 65047921 65047921 C T CACHD1 Missense_Mutation p.T64M 0.30 tolerated(0.06) possibly_damaging(0.837) TCGA-CQ-5330-01 20 3543984 3543984 C T ATRN Missense_Mutation p.S587F 0.05 deleterious(0) probably_damaging(0.999) TCGA-CQ-5330-01 20 44581029 44581029 G A ZNF335 Silent p.C982C 0.33 TCGA-CQ-5330-01 21 38573962 38573962 A G TTC3 3'UTR 0.18 TCGA-CQ-5330-01 22 19119046 19119046 G A TSSK2 Missense_Mutation p.R45H 0.09 deleterious(0) possibly_damaging(0.496) TCGA-CQ-5330-01 22 38493127 38493127 G A BAIAP2L2 Missense_Mutation p.A175V 0.23 deleterious(0.04) probably_damaging(0.929) TCGA-CQ-5330-01 2 113500423 113500423 A G NT5DC4 3'UTR 0.33 TCGA-CQ-5330-01 2 113514030 113514030 A G CKAP2L Silent p.N306N 0.23 TCGA-CQ-5330-01 2 220422717 220422717 C T OBSL1 Nonsense_Mutation p.W1206* 0.24 TCGA-CQ-5330-01 2 224749380 224749380 C G WDFY1 Silent p.T306T 0.20 TCGA-CQ-5330-01 2 231067413 231067413 C T SP110 Silent p.K310K 0.25 TCGA-CQ-5330-01 3 101066766 101066766 T C SENP7 Missense_Mutation p.Y596C 0.19 deleterious(0.05) probably_damaging(0.977) TCGA-CQ-5330-01 3 14862067 14862067 G A FGD5 Missense_Mutation p.V497I 0.12 deleterious(0) probably_damaging(0.994) TCGA-CQ-5330-01 3 196669371 196669371 A T NCBP2 Missense_Mutation p.S2T 0.17 tolerated(0.14) benign(0.3) TCGA-CQ-5330-01 3 58728175 58728175 C T C3orf67 3'UTR 0.24 TCGA-CQ-5330-01 4 167020437 167020437 G A TLL1 Missense_Mutation p.G889R 0.19 deleterious(0) probably_damaging(0.999) TCGA-CQ-5330-01 4 17827167 17827167 G A NCAPG Missense_Mutation p.E546K 0.10 deleterious(0) possibly_damaging(0.688) TCGA-CQ-5330-01 4 40440251 40440251 C T RBM47 Silent p.Q220Q 0.35 TCGA-CQ-5330-01 5 13701428 13701428 A T DNAH5 Missense_Mutation p.F4486I 0.41 possibly_damaging(0.637) TCGA-CQ-5330-01 5 140264049 140264049 C T PCDHA13 Silent p.C732C 0.31 TCGA-CQ-5330-01 5 38506632 38506632 C T LIFR Missense_Mutation p.R365H 0.38 deleterious(0.03) benign(0.186) TCGA-CQ-5330-01 5 39394458 39394458 G A DAB2 5'UTR 0.40 TCGA-CQ-5330-01 5 71492289 71492289 C T MAP1B Missense_Mutation p.P1036L 0.29 benign(0.062) TCGA-CQ-5330-01 5 98233025 98233025 C T CHD1 Splice_Site p.X456_splice 0.24 TCGA-CQ-5330-01 6 127476478 127476478 C T RSPO3 Nonsense_Mutation p.R177* 0.32 TCGA-CQ-5330-01 6 35919019 35919019 C A SLC26A8 Missense_Mutation p.R798M 0.26 deleterious(0) probably_damaging(0.957) TCGA-CQ-5330-01 7 5567491 5567491 A G ACTB Missense_Mutation p.V339A 0.21 tolerated_low_confidence(0.08) possibly_damaging(0.484) TCGA-CQ-5330-01 7 92762359 92762359 C T SAMD9L Missense_Mutation p.V976I 0.27 tolerated(0.09) possibly_damaging(0.666) TCGA-CQ-5330-01 8 143957228 143957228 G A CYP11B1 Missense_Mutation p.R341C 0.52 deleterious(0.02) probably_damaging(0.998) TCGA-CQ-5330-01 8 144657851 144657851 C T NAPRT1 Missense_Mutation p.G377S 0.33 deleterious(0) probably_damaging(1) TCGA-CQ-5330-01 8 15601052 15601052 G A TUSC3 Missense_Mutation p.A290T 0.50 tolerated(0.06) benign(0.094) TCGA-CQ-5330-01 8 77775641 77775641 A G ZFHX4 Missense_Mutation p.K3231E 0.08 probably_damaging(0.979) TCGA-CQ-5330-01 8 85799858 85799858 G A RALYL Silent p.L248L 0.09 TCGA-CQ-5330-01 9 116132021 116132021 G A BSPRY Missense_Mutation p.D270N 0.22 tolerated(0.07) possibly_damaging(0.646) TCGA-CQ-5330-01 9 139371059 139371059 G A SEC16A Missense_Mutation p.L337F 0.16 tolerated(0.22) benign(0.016) TCGA-CQ-5330-01 9 21971045 21971059 CCAGCCGCGCCCCGG - CDKN2A In_Frame_Del p.A100_L104del 0.57 TCGA-CQ-5330-01 9 88203249 88203249 A C AGTPBP1 Missense_Mutation p.V916G 0.28 deleterious(0) possibly_damaging(0.828) TCGA-CQ-5330-01 9 95177520 95177520 C T OMD Missense_Mutation p.D394N 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.569) TCGA-CQ-5330-01 X 100603774 100603774 G A TIMM8A 5'UTR 0.33 TCGA-CQ-5330-01 X 119388776 119388776 A G ZBTB33 Silent p.S502S 0.09 TCGA-CQ-5330-01 X 131205199 131205199 G A MST4 Missense_Mutation p.A296T 0.27 tolerated(0.09) benign(0.011) TCGA-CQ-5330-01 X 137791006 137791006 C T FGF13 Missense_Mutation p.G101D 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CQ-5330-01 X 48558589 48558589 G A SUV39H1 Silent p.K91K 0.23 TCGA-CQ-5330-01 X 53562382 53562384 CTT - HUWE1 In_Frame_Del p.K4204del 0.27 TCGA-CQ-5330-01 X 84523345 84523345 C T ZNF711 Missense_Mutation p.S321L 0.36 tolerated(0.65) possibly_damaging(0.81) TCGA-CQ-5331-01 10 122619653 122619653 C T WDR11 Missense_Mutation p.R129C 0.22 deleterious(0) possibly_damaging(0.676) TCGA-CQ-5331-01 10 124610049 124610049 C T CUZD1 5'UTR 0.16 TCGA-CQ-5331-01 10 134008424 134008424 C T DPYSL4 Missense_Mutation p.A130V 0.14 deleterious(0.01) benign(0.002) TCGA-CQ-5331-01 10 3823969 3823969 C G KLF6 Silent p.S180S 0.07 TCGA-CQ-5331-01 10 70940261 70940261 C T SUPV3L1 Nonsense_Mutation p.Q72* 0.17 TCGA-CQ-5331-01 10 76788729 76788729 G C KAT6B Missense_Mutation p.D1383H 0.13 benign(0.155) TCGA-CQ-5331-01 11 113670017 113670017 C A USP28 Missense_Mutation p.R1060L 0.16 deleterious(0) probably_damaging(0.999) TCGA-CQ-5331-01 11 18610243 18610243 C T UEVLD 5'Flank 0.11 TCGA-CQ-5331-01 11 3249416 3249416 C T MRGPRE Missense_Mutation p.R204Q 0.27 tolerated(0.51) benign(0.106) TCGA-CQ-5331-01 11 44956498 44956498 G T TP53I11 Silent p.L169L 0.13 TCGA-CQ-5331-01 11 62520951 62520951 A T ZBTB3 Missense_Mutation p.D112E 0.18 deleterious(0) possibly_damaging(0.897) TCGA-CQ-5331-01 11 64846603 64846603 C G CDCA5 Missense_Mutation p.E245D 0.10 deleterious(0.03) probably_damaging(0.973) TCGA-CQ-5331-01 11 67271664 67271664 C T PITPNM1 5'UTR 0.24 TCGA-CQ-5331-01 11 77412091 77412091 C A RSF1 Missense_Mutation p.R728M 0.14 deleterious(0.03) probably_damaging(0.982) TCGA-CQ-5331-01 11 85435915 85435915 C T SYTL2 Missense_Mutation p.E529K 0.11 tolerated(0.12) benign(0.039) TCGA-CQ-5331-01 11 9456494 9456494 C T IPO7 Silent p.L696L 0.10 TCGA-CQ-5331-01 12 102153834 102153834 G A GNPTAB Nonsense_Mutation p.Q1075* 0.13 TCGA-CQ-5331-01 12 15784565 15784565 C T EPS8 Missense_Mutation p.D619N 0.09 tolerated(0.5) benign(0.001) TCGA-CQ-5331-01 12 27461352 27461352 C G STK38L Missense_Mutation p.D89E 0.20 deleterious(0) probably_damaging(0.945) TCGA-CQ-5331-01 12 32369283 32369283 C G BICD1 Missense_Mutation p.L106V 0.17 tolerated(0.38) benign(0.07) TCGA-CQ-5331-01 12 48545077 48545077 C G ASB8 Silent p.V47V 0.21 TCGA-CQ-5331-01 12 49724994 49724994 C G TROAP Intron 0.07 TCGA-CQ-5331-01 12 52962128 52962128 C G KRT74 Missense_Mutation p.D394H 0.12 deleterious(0.01) possibly_damaging(0.451) TCGA-CQ-5331-01 12 57660580 57660580 C G R3HDM2 Missense_Mutation p.E675Q 0.13 tolerated(0.09) possibly_damaging(0.887) TCGA-CQ-5331-01 12 68052177 68052177 G A DYRK2 Missense_Mutation p.G497E 0.12 tolerated(0.5) benign(0.006) TCGA-CQ-5331-01 12 8926332 8926332 C G RIMKLB Missense_Mutation p.F371L 0.12 tolerated_low_confidence(0.17) benign(0.001) TCGA-CQ-5331-01 12 9020435 9020435 C G A2ML1 Intron 0.15 TCGA-CQ-5331-01 13 111372242 111372242 T G ING1 Missense_Mutation p.L411R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CQ-5331-01 13 113478732 113478732 G A ATP11A Missense_Mutation p.V289M 0.13 deleterious(0) probably_damaging(0.994) TCGA-CQ-5331-01 13 51854623 51854623 G C FAM124A Missense_Mutation p.R327T 0.14 tolerated(0.12) possibly_damaging(0.72) TCGA-CQ-5331-01 13 73327930 73327930 G A BORA Missense_Mutation p.E529K 0.09 deleterious_low_confidence(0.05) benign(0.029) TCGA-CQ-5331-01 13 96329505 96329505 C T DNAJC3 5'UTR 0.13 TCGA-CQ-5331-01 14 101012923 101012923 C T BEGAIN Missense_Mutation p.E31K 0.13 deleterious(0) probably_damaging(0.992) TCGA-CQ-5331-01 14 23313957 23313957 C T MMP14 Silent p.P423P 0.12 TCGA-CQ-5331-01 14 59820601 59820601 C T DAAM1 Missense_Mutation p.H769Y 0.10 deleterious(0) possibly_damaging(0.775) TCGA-CQ-5331-01 14 75376489 75376489 G A RPS6KL1 Missense_Mutation p.R343W 0.16 tolerated(0.14) benign(0) TCGA-CQ-5331-01 14 80158584 80158584 G A NRXN3 Intron 0.11 TCGA-CQ-5331-01 14 91389537 91389537 C G RPS6KA5 Missense_Mutation p.E208Q 0.14 tolerated(0.14) benign(0.007) TCGA-CQ-5331-01 15 40661167 40661167 G A DISP2 Missense_Mutation p.E952K 0.15 tolerated(0.05) benign(0.287) TCGA-CQ-5331-01 15 40758394 40758394 G A BAHD1 3'UTR 0.15 TCGA-CQ-5331-01 15 41145359 41145359 G C SPINT1 Missense_Mutation p.L171F 0.14 deleterious(0.05) possibly_damaging(0.873) TCGA-CQ-5331-01 15 43351984 43351984 C G UBR1 Missense_Mutation p.E301Q 0.14 tolerated(0.59) probably_damaging(0.964) TCGA-CQ-5331-01 15 43622444 43622444 G A LCMT2 Missense_Mutation p.R82C 0.09 deleterious(0.02) possibly_damaging(0.75) TCGA-CQ-5331-01 15 43814803 43814803 G A MAP1A Missense_Mutation p.E378K 0.12 benign(0.245) TCGA-CQ-5331-01 15 48500096 48500096 C T SLC12A1 Silent p.I60I 0.12 TCGA-CQ-5331-01 15 50519205 50519205 C T SLC27A2 Silent p.I429I 0.10 TCGA-CQ-5331-01 15 83215266 83215266 C G CPEB1 Missense_Mutation p.Q500H 0.10 deleterious(0) probably_damaging(0.992) TCGA-CQ-5331-01 15 90934036 90934036 A T IQGAP1 Missense_Mutation p.E29V 0.09 deleterious(0) benign(0.355) TCGA-CQ-5331-01 16 11862205 11862205 C G ZC3H7A Missense_Mutation p.L442F 0.18 tolerated(1) benign(0.09) TCGA-CQ-5331-01 16 20871316 20871316 G C DCUN1D3 Silent p.L269L 0.15 TCGA-CQ-5331-01 16 23116891 23116891 G A USP31 Silent p.L320L 0.18 TCGA-CQ-5331-01 16 24800705 24800705 G C TNRC6A Missense_Mutation p.E248Q 0.07 deleterious(0.03) possibly_damaging(0.783) TCGA-CQ-5331-01 16 57741450 57741450 G A CCDC135 Missense_Mutation p.E313K 0.16 tolerated(0.05) probably_damaging(0.923) TCGA-CQ-5331-01 16 69385485 69385485 G T TMED6 Missense_Mutation p.Q58K 0.11 deleterious(0.05) possibly_damaging(0.801) TCGA-CQ-5331-01 16 69969816 69969816 C T WWP2 Missense_Mutation p.L635F 0.16 deleterious(0) probably_damaging(0.99) TCGA-CQ-5331-01 16 72830136 72830136 G A ZFHX3 Missense_Mutation p.R2149C 0.16 probably_damaging(0.999) TCGA-CQ-5331-01 16 731286 731286 C T STUB1 Silent p.F98F 0.09 TCGA-CQ-5331-01 17 16089965 16089965 C T NCOR1 Missense_Mutation p.E49K 0.08 possibly_damaging(0.869) TCGA-CQ-5331-01 17 2234280 2234280 G T TSR1 Silent p.I540I 0.09 TCGA-CQ-5331-01 17 26817427 26817427 G A SLC13A2 Missense_Mutation p.D112N 0.15 tolerated(0.25) benign(0.058) TCGA-CQ-5331-01 17 3783646 3783646 C T CAMKK1 Missense_Mutation p.E302K 0.17 deleterious(0) probably_damaging(0.999) TCGA-CQ-5331-01 17 56289744 56289744 C G MKS1 Missense_Mutation p.E304Q 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-CQ-5331-01 17 56345268 56345268 C T LPO Silent p.F684F 0.15 TCGA-CQ-5331-01 17 62081150 62081150 G A ICAM2 Missense_Mutation p.P168L 0.19 tolerated(0.23) benign(0.001) TCGA-CQ-5331-01 17 63537611 63537611 C A AXIN2 Missense_Mutation p.V341L 0.12 deleterious(0.03) possibly_damaging(0.721) TCGA-CQ-5331-01 17 64216816 64216816 G A APOH Missense_Mutation p.R154C 0.12 tolerated(0.07) benign(0.002) TCGA-CQ-5331-01 17 6930941 6930941 G C BCL6B 3'UTR 0.13 TCGA-CQ-5331-01 17 7576927 7576927 C G TP53 Splice_Site p.X307_splice 0.18 TCGA-CQ-5331-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.09 deleterious(0) probably_damaging(0.947) TCGA-CQ-5331-01 17 78444754 78444754 C T NPTX1 Silent p.L386L 0.14 TCGA-CQ-5331-01 18 6890002 6890002 C G ARHGAP28 Missense_Mutation p.S392C 0.12 deleterious(0) probably_damaging(0.971) TCGA-CQ-5331-01 19 17170416 17170416 G A HAUS8 Missense_Mutation p.S124L 0.14 tolerated(0.11) benign(0.005) TCGA-CQ-5331-01 19 22154039 22154039 G C ZNF208 Nonsense_Mutation p.S1266* 0.10 TCGA-CQ-5331-01 19 362264 362264 G A THEG Missense_Mutation p.S359F 0.14 deleterious(0.04) possibly_damaging(0.61) TCGA-CQ-5331-01 19 38959733 38959733 C G RYR1 Missense_Mutation p.S1170C 0.09 probably_damaging(0.984) TCGA-CQ-5331-01 19 44470712 44470712 T A ZNF221 Missense_Mutation p.L353H 0.12 deleterious(0) probably_damaging(0.999) TCGA-CQ-5331-01 19 49610936 49610936 C T SNRNP70 Missense_Mutation p.S211L 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-5331-01 19 54724540 54724540 G A LILRB3 Silent p.Y372Y 0.23 TCGA-CQ-5331-01 1 111778658 111778658 C T CHI3L2 Silent p.F206F 0.15 TCGA-CQ-5331-01 1 12012751 12012751 C G PLOD1 Missense_Mutation p.Q180E 0.13 deleterious(0) possibly_damaging(0.844) TCGA-CQ-5331-01 1 120168657 120168657 C G ZNF697 Missense_Mutation p.D23H 0.10 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-CQ-5331-01 1 161254169 161254169 G A PCP4L1 Silent p.E35E 0.08 TCGA-CQ-5331-01 1 201047194 201047194 C T CACNA1S Missense_Mutation p.E478K 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-5331-01 1 210012455 210012455 G A DIEXF Missense_Mutation p.D422N 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-CQ-5331-01 1 228433261 228433261 C G OBSCN Nonsense_Mutation p.S1302* 0.13 TCGA-CQ-5331-01 1 234529206 234529206 C A TARBP1 Missense_Mutation p.G1488W 0.15 deleterious(0) probably_damaging(1) TCGA-CQ-5331-01 1 241261998 241261998 C A RGS7 Missense_Mutation p.S48I 0.16 tolerated(0.12) probably_damaging(0.988) TCGA-CQ-5331-01 1 247241943 247241943 G A ZNF670 5'UTR 0.16 TCGA-CQ-5331-01 1 31732872 31732872 C G SNRNP40 3'UTR 0.15 TCGA-CQ-5331-01 1 37324810 37324810 C T GRIK3 Missense_Mutation p.V335M 0.09 tolerated(0.14) possibly_damaging(0.86) TCGA-CQ-5331-01 1 66102651 66102651 C T LEPR Nonsense_Mutation p.Q1151* 0.05 TCGA-CQ-5331-01 1 9097607 9097607 C A SLC2A5 3'UTR 0.17 TCGA-CQ-5331-01 20 24989982 24989982 G C ACSS1 Nonsense_Mutation p.S605* 0.16 TCGA-CQ-5331-01 21 38081563 38081563 C T SIM2 Intron 0.17 TCGA-CQ-5331-01 21 43862566 43862566 C G UBASH3A Silent p.L497L 0.14 TCGA-CQ-5331-01 22 20307265 20307265 G C DGCR6L Silent p.L56L 0.23 TCGA-CQ-5331-01 22 38698935 38698935 G C CSNK1E Silent p.L89L 0.15 TCGA-CQ-5331-01 22 39417465 39417465 G A APOBEC3D 5'UTR 0.23 TCGA-CQ-5331-01 22 41556666 41556666 G A EP300 Missense_Mutation p.C1204Y 0.18 probably_damaging(0.999) TCGA-CQ-5331-01 2 101188255 101188255 G C PDCL3 Missense_Mutation p.R191T 0.15 tolerated(0.61) benign(0.063) TCGA-CQ-5331-01 2 132021797 132021797 C G POTEE Missense_Mutation p.F923L 0.04 deleterious_low_confidence(0.03) possibly_damaging(0.623) TCGA-CQ-5331-01 2 133174980 133174980 C T GPR39 Missense_Mutation p.T122M 0.22 deleterious(0) probably_damaging(0.999) TCGA-CQ-5331-01 2 152383461 152383461 C A NEB Missense_Mutation p.A7306S 0.18 probably_damaging(1) TCGA-CQ-5331-01 2 179529384 179529384 C A TTN Nonsense_Mutation p.E12067* 0.12 TCGA-CQ-5331-01 2 179611406 179611406 C G TTN Intron 0.06 TCGA-CQ-5331-01 2 179611715 179611715 C T TTN Intron 0.20 TCGA-CQ-5331-01 2 201485524 201485524 G C AOX1 Missense_Mutation p.R619T 0.21 deleterious(0) possibly_damaging(0.891) TCGA-CQ-5331-01 2 202131505 202131505 C T CASP8 Missense_Mutation p.S158F 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-CQ-5331-01 2 219082227 219082227 G A ARPC2 Missense_Mutation p.E12K 0.15 tolerated(0.31) benign(0.107) TCGA-CQ-5331-01 2 232392867 232392867 C T NMUR1 Missense_Mutation p.D289N 0.11 tolerated(0.37) benign(0.016) TCGA-CQ-5331-01 2 29240094 29240094 G A FAM179A Silent p.R373R 0.14 TCGA-CQ-5331-01 2 46986940 46986940 G C SOCS5 Missense_Mutation p.R424T 0.15 deleterious(0) probably_damaging(0.99) TCGA-CQ-5331-01 3 132047150 132047150 C A ACPP Missense_Mutation p.P54T 0.07 deleterious(0) probably_damaging(0.999) TCGA-CQ-5331-01 3 154146734 154146734 C T GPR149 Missense_Mutation p.R224K 0.10 tolerated(0.56) possibly_damaging(0.74) TCGA-CQ-5331-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.11 tolerated(0.11) possibly_damaging(0.529) TCGA-CQ-5331-01 3 194118459 194118459 G T GP5 Missense_Mutation p.L185M 0.17 deleterious(0) probably_damaging(0.998) TCGA-CQ-5331-01 3 49927421 49927421 C T MST1R Missense_Mutation p.D1295N 0.11 deleterious(0) probably_damaging(1) TCGA-CQ-5331-01 3 52394093 52394093 G A DNAH1 Silent p.L1523L 0.18 TCGA-CQ-5331-01 3 56605280 56605280 G A CCDC66 Missense_Mutation p.E296K 0.14 tolerated(0.06) possibly_damaging(0.897) TCGA-CQ-5331-01 3 77666886 77666886 G C ROBO2 Missense_Mutation p.L1188F 0.11 deleterious(0.01) possibly_damaging(0.587) TCGA-CQ-5331-01 3 78656171 78656171 G A ROBO1 Missense_Mutation p.P1486S 0.05 tolerated_low_confidence(0.23) probably_damaging(0.986) TCGA-CQ-5331-01 4 129857913 129857913 C G SCLT1 Missense_Mutation p.E576Q 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CQ-5331-01 4 17805653 17805653 C T DCAF16 Missense_Mutation p.E38K 0.11 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-CQ-5331-01 4 184626188 184626188 T A TRAPPC11 Missense_Mutation p.V1007E 0.14 deleterious(0) probably_damaging(0.985) TCGA-CQ-5331-01 4 1985396 1985396 C G NELFA Missense_Mutation p.E454D 0.16 tolerated(0.15) possibly_damaging(0.801) TCGA-CQ-5331-01 4 1985419 1985419 C G NELFA Missense_Mutation p.E447Q 0.14 tolerated(0.08) possibly_damaging(0.859) TCGA-CQ-5331-01 4 49052833 49052833 G C CWH43 Missense_Mutation p.R663T 0.09 tolerated(0.12) benign(0.149) TCGA-CQ-5331-01 5 132051521 132051521 C G KIF3A Missense_Mutation p.E353Q 0.13 deleterious(0.02) probably_damaging(0.94) TCGA-CQ-5331-01 5 140237074 140237074 G A PCDHA10 Missense_Mutation p.A481T 0.14 deleterious_low_confidence(0.02) benign(0.292) TCGA-CQ-5331-01 5 148206508 148206508 C T ADRB2 Silent p.I38I 0.11 TCGA-CQ-5331-01 5 148427536 148427536 G A SH3TC2 Silent p.F56F 0.10 TCGA-CQ-5331-01 5 16067874 16067874 A T MARCH11 Silent p.V305V 0.11 TCGA-CQ-5331-01 5 172550143 172550143 C T CREBRF Missense_Mutation p.P581L 0.11 tolerated(0.25) benign(0.124) TCGA-CQ-5331-01 5 178152447 178152447 C T ZNF354A Silent p.V62V 0.13 TCGA-CQ-5331-01 5 43246074 43246074 C T NIM1K Missense_Mutation p.T66M 0.12 tolerated(0.15) possibly_damaging(0.475) TCGA-CQ-5331-01 5 64267529 64267529 G C CWC27 Splice_Site p.X348_splice 0.07 TCGA-CQ-5331-01 5 68715437 68715437 C G MARVELD2 Silent p.L75L 0.11 TCGA-CQ-5331-01 5 71757020 71757020 C G ZNF366 Missense_Mutation p.E102Q 0.17 tolerated_low_confidence(0.15) benign(0.026) TCGA-CQ-5331-01 6 111587118 111587118 G A KIAA1919 Missense_Mutation p.G118E 0.29 deleterious(0) possibly_damaging(0.821) TCGA-CQ-5331-01 6 144780337 144780337 C T UTRN Missense_Mutation p.H852Y 0.07 deleterious(0.01) benign(0.065) TCGA-CQ-5331-01 6 26252263 26252263 G C HIST1H2BH 3'UTR 0.07 TCGA-CQ-5331-01 6 31779660 31779660 G A HSPA1L Silent p.I30I 0.06 TCGA-CQ-5331-01 6 31975160 31975160 G A C4A 3'Flank 0.15 TCGA-CQ-5331-01 6 43323487 43323487 G A ZNF318 Missense_Mutation p.P529S 0.21 probably_damaging(0.999) TCGA-CQ-5331-01 6 50740385 50740385 G A TFAP2D Silent p.P389P 0.14 TCGA-CQ-5331-01 6 51612823 51612823 C G PKHD1 Missense_Mutation p.Q3197H 0.14 tolerated(0.52) benign(0.087) TCGA-CQ-5331-01 6 51934279 51934279 G C PKHD1 Missense_Mutation p.L252V 0.15 deleterious(0.01) possibly_damaging(0.706) TCGA-CQ-5331-01 6 52129419 52129419 G T MCM3 Silent p.V843V 0.07 TCGA-CQ-5331-01 6 86346765 86346765 C G SYNCRIP Missense_Mutation p.D196H 0.13 deleterious(0) probably_damaging(0.996) TCGA-CQ-5331-01 6 90660199 90660199 G C BACH2 Silent p.L542L 0.31 TCGA-CQ-5331-01 7 100676143 100676143 G A MUC17 Silent p.Q482Q 0.12 TCGA-CQ-5331-01 7 105752650 105752650 G A SYPL1 Missense_Mutation p.S20F 0.11 deleterious(0.04) benign(0.362) TCGA-CQ-5331-01 7 105752700 105752700 G C SYPL1 Intron 0.10 TCGA-CQ-5331-01 7 135098284 135098284 G A CNOT4 Missense_Mutation p.H214Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-CQ-5331-01 7 138418934 138418934 G A ATP6V0A4 Silent p.I546I 0.12 TCGA-CQ-5331-01 7 21939660 21939660 G A DNAH11 Missense_Mutation p.D4416N 0.21 possibly_damaging(0.836) TCGA-CQ-5331-01 7 7273911 7273911 C T C1GALT1 Intron 0.14 TCGA-CQ-5331-01 7 7278194 7278194 G C C1GALT1 Missense_Mutation p.D177H 0.10 deleterious(0) probably_damaging(0.936) TCGA-CQ-5331-01 7 87148696 87148696 C T ABCB1 Missense_Mutation p.R958Q 0.15 deleterious(0.05) benign(0.041) TCGA-CQ-5331-01 7 87782587 87782587 C T ADAM22 Missense_Mutation p.T578M 0.11 deleterious(0) probably_damaging(0.998) TCGA-CQ-5331-01 7 99474426 99474426 G A OR2AE1 Silent p.I77I 0.16 TCGA-CQ-5331-01 8 104336827 104336827 C G FZD6 Missense_Mutation p.L165V 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-5331-01 8 122626357 122626358 - AA HAS2 Frame_Shift_Ins p.D551Lfs*69 0.21 TCGA-CQ-5331-01 8 133885398 133885398 G C TG Missense_Mutation p.M190I 0.12 deleterious(0.03) benign(0.049) TCGA-CQ-5331-01 8 17157648 17157648 G C MTMR7 Missense_Mutation p.S569C 0.13 deleterious(0.03) benign(0.001) TCGA-CQ-5331-01 8 39781060 39781060 G C IDO1 Missense_Mutation p.A204P 0.12 tolerated(0.07) probably_damaging(0.994) TCGA-CQ-5331-01 8 53570373 53570373 T A RB1CC1 Silent p.P672P 0.13 TCGA-CQ-5331-01 8 69358708 69358708 C G C8orf34 Intron 0.16 TCGA-CQ-5331-01 8 72267089 72267089 C T EYA1 Missense_Mutation p.E18K 0.12 tolerated_low_confidence(0.05) benign(0.189) TCGA-CQ-5331-01 8 7718258 7718258 G A SPAG11A Intron 0.12 TCGA-CQ-5331-01 8 86114424 86114424 G A E2F5 Missense_Mutation p.D93N 0.14 deleterious(0) probably_damaging(1) TCGA-CQ-5331-01 9 131084698 131084698 C A TRUB2 5'UTR 0.19 TCGA-CQ-5331-01 9 139757370 139757370 C G EDF1 Missense_Mutation p.E125Q 0.12 deleterious(0.02) possibly_damaging(0.712) TCGA-CQ-5331-01 9 139820534 139820534 T C TRAF2 3'UTR 0.25 TCGA-CQ-5331-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.15 TCGA-CQ-5331-01 9 35810671 35810671 C T SPAG8 Missense_Mutation p.E350K 0.10 tolerated(0.07) probably_damaging(0.999) TCGA-CQ-5331-01 9 79318700 79318700 G A PRUNE2 Missense_Mutation p.S2610F 0.12 deleterious(0.04) benign(0.025) TCGA-CQ-5331-01 9 8376064 8376064 C G PTPRD Silent p.V1511V 0.18 TCGA-CQ-5331-01 9 98774833 98774833 G C ERCC6L2 Missense_Mutation p.R306T 0.20 tolerated(0.17) benign(0.032) TCGA-CQ-5331-01 X 140996182 140996182 C A MAGEC1 Missense_Mutation p.R998S 0.10 tolerated(0.51) unknown(0) TCGA-CQ-5331-01 X 144337425 144337425 C G SPANXN1 3'UTR 0.14 TCGA-CQ-5331-01 X 153735817 153735817 G C FAM3A Silent p.V130V 0.15 TCGA-CQ-5331-01 X 31986458 31986458 C G DMD Missense_Mutation p.K2204N 0.09 possibly_damaging(0.607) TCGA-CQ-5331-01 X 47837082 47837082 C G ZNF182 Missense_Mutation p.R135P 0.13 tolerated(0.18) benign(0.001) TCGA-CQ-5331-01 X 48417355 48417355 G C TBC1D25 Missense_Mutation p.E153D 0.08 tolerated(0.14) benign(0.089) TCGA-CQ-5331-01 X 63412536 63412536 C A AMER1 Missense_Mutation p.A211S 0.13 tolerated(0.13) benign(0.018) TCGA-CQ-5331-01 X 70346843 70346843 G C MED12 Missense_Mutation p.E904Q 0.08 probably_damaging(0.996) TCGA-CQ-5331-01 X 73046762 73046762 A T XIST RNA 0.11 TCGA-CQ-5332-01 10 115393949 115393949 G A NRAP Silent p.I483I 0.50 TCGA-CQ-5332-01 10 127438083 127438083 C T EDRF1 Silent p.L1076L 0.51 TCGA-CQ-5332-01 10 21823717 21823717 C G MLLT10 Missense_Mutation p.S48R 0.09 deleterious(0) possibly_damaging(0.495) TCGA-CQ-5332-01 10 26500926 26500926 C T MYO3A 3'UTR 0.18 TCGA-CQ-5332-01 10 33217097 33217097 C T ITGB1 Missense_Mutation p.D158N 0.33 tolerated(0.07) possibly_damaging(0.537) TCGA-CQ-5332-01 10 96097619 96097620 - A NOC3L Frame_Shift_Ins p.P702Sfs*17 0.19 TCGA-CQ-5332-01 11 120776051 120776051 A G GRIK4 Missense_Mutation p.D442G 0.43 deleterious(0.01) possibly_damaging(0.698) TCGA-CQ-5332-01 11 121008284 121008284 G A TECTA Silent p.T1032T 0.44 TCGA-CQ-5332-01 11 124310617 124310617 C T OR8B8 Missense_Mutation p.R122H 0.20 deleterious_low_confidence(0.03) benign(0.117) TCGA-CQ-5332-01 11 128709340 128709340 G A KCNJ1 Missense_Mutation p.L286F 0.32 deleterious(0.01) possibly_damaging(0.672) TCGA-CQ-5332-01 11 36614176 36614176 T G RAG2 Missense_Mutation p.T515P 0.53 deleterious(0.04) probably_damaging(0.979) TCGA-CQ-5332-01 11 55594934 55594934 G T OR5L2 Missense_Mutation p.K80N 0.28 tolerated(0.06) possibly_damaging(0.884) TCGA-CQ-5332-01 11 56431630 56431630 G T OR5AR1 Missense_Mutation p.V157L 0.47 tolerated(1) benign(0.008) TCGA-CQ-5332-01 12 100441863 100441865 AAT - UHRF1BP1L In_Frame_Del p.F1277del 0.36 TCGA-CQ-5332-01 12 103248914 103248914 T A PAH Missense_Mutation p.T236S 0.34 tolerated(0.18) benign(0) TCGA-CQ-5332-01 12 118456893 118456893 C A RFC5 Missense_Mutation p.P28T 0.42 deleterious(0) probably_damaging(1) TCGA-CQ-5332-01 12 124228745 124228745 C G ATP6V0A2 Intron 0.42 TCGA-CQ-5332-01 12 12483418 12483418 G A MANSC1 Missense_Mutation p.T280M 0.55 deleterious(0.04) benign(0.023) TCGA-CQ-5332-01 12 21028240 21028240 C A SLCO1B3 Missense_Mutation p.L267I 0.11 tolerated(0.64) benign(0.02) TCGA-CQ-5332-01 12 30881780 30881780 T C CAPRIN2 Silent p.S528S 0.25 TCGA-CQ-5332-01 12 40681307 40681307 T C LRRK2 Silent p.S885S 0.13 TCGA-CQ-5332-01 12 4737262 4737262 C T AKAP3 Missense_Mutation p.R269Q 0.60 tolerated(0.35) benign(0.046) TCGA-CQ-5332-01 12 4835920 4835920 G A GALNT8 Missense_Mutation p.R145Q 0.21 tolerated(1) benign(0.001) TCGA-CQ-5332-01 12 52685196 52685196 G A KRT81 Silent p.C18C 0.41 TCGA-CQ-5332-01 12 53849719 53849719 C T PCBP2 Silent p.I59I 0.26 TCGA-CQ-5332-01 12 54797970 54797970 T A ITGA5 Silent p.P508P 0.41 TCGA-CQ-5332-01 12 57588203 57588203 G T LRP1 Missense_Mutation p.R2662L 0.48 benign(0.089) TCGA-CQ-5332-01 12 70954686 70954686 C A PTPRB Silent p.G1399G 0.09 TCGA-CQ-5332-01 12 72866930 72866930 T C TRHDE Silent p.G473G 0.44 TCGA-CQ-5332-01 12 8666179 8666179 C T CLEC4D 5'UTR 0.26 TCGA-CQ-5332-01 13 23905170 23905170 C G SACS Missense_Mutation p.G4282A 0.46 benign(0.001) TCGA-CQ-5332-01 13 23915744 23915744 G C SACS Silent p.G757G 0.12 TCGA-CQ-5332-01 13 74420023 74420023 C G KLF12 Missense_Mutation p.G204A 0.41 tolerated(0.07) benign(0.277) TCGA-CQ-5332-01 13 76395471 76395471 A G LMO7 Missense_Mutation p.E556G 0.28 deleterious(0) benign(0.423) TCGA-CQ-5332-01 13 97485361 97485361 G A HS6ST3 Missense_Mutation p.R442Q 0.40 deleterious(0.03) benign(0.029) TCGA-CQ-5332-01 14 19553855 19553855 G T POTEG Missense_Mutation p.A147S 0.14 deleterious(0) probably_damaging(0.997) TCGA-CQ-5332-01 14 20444015 20444015 G A OR4K15 Missense_Mutation p.R113H 0.58 tolerated(1) benign(0) TCGA-CQ-5332-01 14 65260353 65260353 C T SPTB Silent p.Q676Q 0.45 TCGA-CQ-5332-01 14 70795912 70795912 T C COX16 Missense_Mutation p.I61M 0.21 deleterious(0.02) possibly_damaging(0.739) TCGA-CQ-5332-01 14 76012935 76012935 C T BATF Missense_Mutation p.T100M 0.19 tolerated(0.11) benign(0.038) TCGA-CQ-5332-01 14 92249476 92249476 C T TC2N Missense_Mutation p.V481I 0.23 tolerated(0.19) possibly_damaging(0.678) TCGA-CQ-5332-01 14 94088956 94088956 G C UNC79 Missense_Mutation p.D1616H 0.34 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-CQ-5332-01 15 24921938 24921938 C - NPAP1 Frame_Shift_Del p.C309Vfs*81 0.11 TCGA-CQ-5332-01 15 28419625 28419625 T G HERC2 Missense_Mutation p.T3325P 0.41 possibly_damaging(0.837) TCGA-CQ-5332-01 15 41961254 41961254 G A MGA Silent p.V54V 0.05 TCGA-CQ-5332-01 15 42439887 42439887 C T PLA2G4F Missense_Mutation p.G378E 0.33 deleterious(0) probably_damaging(0.964) TCGA-CQ-5332-01 15 50211036 50211036 C A ATP8B4 Nonsense_Mutation p.E679* 0.18 TCGA-CQ-5332-01 15 81591957 81591957 G A IL16 Missense_Mutation p.A764T 0.45 tolerated(0.56) benign(0.004) TCGA-CQ-5332-01 16 2031220 2031220 G T NOXO1 5'Flank 0.38 TCGA-CQ-5332-01 16 20570634 20570634 G A ACSM2B Missense_Mutation p.R105C 0.33 deleterious(0.01) benign(0.095) TCGA-CQ-5332-01 16 27460487 27460487 C A IL21R Missense_Mutation p.S500R 0.15 deleterious(0) possibly_damaging(0.735) TCGA-CQ-5332-01 16 424221 424221 C T TMEM8A Silent p.T585T 0.32 TCGA-CQ-5332-01 16 58571071 58571071 C T CNOT1 Missense_Mutation p.R1823H 0.09 deleterious(0) possibly_damaging(0.775) TCGA-CQ-5332-01 16 67409205 67409205 C A LRRC36 Missense_Mutation p.P517H 0.29 deleterious(0) possibly_damaging(0.897) TCGA-CQ-5332-01 16 7703882 7703882 C T RBFOX1 Missense_Mutation p.R295C 0.38 deleterious(0) possibly_damaging(0.888) TCGA-CQ-5332-01 16 77327019 77327019 C A ADAMTS18 Missense_Mutation p.C1048F 0.35 deleterious(0) probably_damaging(0.996) TCGA-CQ-5332-01 16 8891474 8891474 C A TMEM186 5'UTR 0.33 TCGA-CQ-5332-01 17 10368799 10368799 G A MYH4 Silent p.I155I 0.35 TCGA-CQ-5332-01 17 21319835 21319835 G A KCNJ12 Missense_Mutation p.G394E 0.08 tolerated(0.56) benign(0) TCGA-CQ-5332-01 17 29253865 29253865 C T ADAP2 Silent p.N82N 0.25 TCGA-CQ-5332-01 17 48192980 48192980 G T SAMD14 Missense_Mutation p.P257H 0.30 deleterious(0) probably_damaging(1) TCGA-CQ-5332-01 17 6493123 6493139 AAGGAGCCTACAGCCTC - KIAA0753 Frame_Shift_Del p.E916Qfs*7 0.25 TCGA-CQ-5332-01 17 7122262 7122262 G A DLG4 5'UTR 0.21 TCGA-CQ-5332-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.80 deleterious(0.01) possibly_damaging(0.876) TCGA-CQ-5332-01 17 76210759 76210759 A G BIRC5 Splice_Site p.X38_splice 0.29 TCGA-CQ-5332-01 17 78355470 78355470 G A RNF213 Missense_Mutation p.V4641M 0.15 probably_damaging(0.939) TCGA-CQ-5332-01 18 42532422 42532422 C G SETBP1 Missense_Mutation p.S1039R 0.20 deleterious(0) possibly_damaging(0.75) TCGA-CQ-5332-01 18 63481745 63481745 C T CDH7 Missense_Mutation p.A177V 0.27 deleterious(0) probably_damaging(0.991) TCGA-CQ-5332-01 18 7050890 7050890 G A LAMA1 Nonsense_Mutation p.R131* 0.36 TCGA-CQ-5332-01 19 17088276 17088276 C G CPAMD8 Missense_Mutation p.V601L 0.35 deleterious(0.02) benign(0.149) TCGA-CQ-5332-01 19 2733161 2733161 G A SLC39A3 Missense_Mutation p.S178L 0.32 deleterious(0) possibly_damaging(0.873) TCGA-CQ-5332-01 19 37904369 37904369 A T ZNF569 Silent p.L397L 0.19 TCGA-CQ-5332-01 19 37917207 37917207 C T ZNF569 Missense_Mutation p.R30K 0.40 tolerated(1) probably_damaging(0.987) TCGA-CQ-5332-01 19 39023129 39023129 G A RYR1 Splice_Site p.X3714_splice 0.09 TCGA-CQ-5332-01 19 4117549 4117549 A C MAP2K2 Missense_Mutation p.F57L 0.34 tolerated(0.06) probably_damaging(0.928) TCGA-CQ-5332-01 19 41510326 41510326 G A CYP2B6 Silent p.L153L 0.46 TCGA-CQ-5332-01 19 43433689 43433689 A T PSG7 Missense_Mutation p.F205Y 0.38 tolerated(0.2) benign(0.012) TCGA-CQ-5332-01 19 44515253 44515253 T C ZNF230 Silent p.H354H 0.16 TCGA-CQ-5332-01 19 44831819 44831819 C T ZNF112 Missense_Mutation p.V837I 0.18 tolerated(0.21) benign(0.397) TCGA-CQ-5332-01 19 44832686 44832686 T G ZNF112 Missense_Mutation p.T548P 0.17 deleterious(0) probably_damaging(0.993) TCGA-CQ-5332-01 19 44983616 44983616 T C ZNF180 Missense_Mutation p.N73S 0.24 tolerated(0.56) benign(0.038) TCGA-CQ-5332-01 19 54779802 54779802 C A LILRB2 Intron 0.37 TCGA-CQ-5332-01 19 58049113 58049113 T A ZNF549 Nonsense_Mutation p.Y247* 0.43 TCGA-CQ-5332-01 19 58049114 58049114 A G ZNF549 Missense_Mutation p.K248E 0.43 tolerated(1) benign(0.004) TCGA-CQ-5332-01 19 6468392 6468392 G T DENND1C Missense_Mutation p.S548R 0.26 tolerated(0.06) benign(0.007) TCGA-CQ-5332-01 1 149858147 149858147 G C HIST2H2BE Missense_Mutation p.S15C 0.31 deleterious_low_confidence(0.02) benign(0.031) TCGA-CQ-5332-01 1 151774826 151774826 G A LINGO4 Missense_Mutation p.R119W 0.12 deleterious(0) probably_damaging(0.972) TCGA-CQ-5332-01 1 159904572 159904572 G A IGSF9 Silent p.V238V 0.14 TCGA-CQ-5332-01 1 161488781 161488781 G C FCGR2A 3'UTR 0.29 TCGA-CQ-5332-01 1 172555026 172555026 T G SUCO Silent p.T532T 0.37 TCGA-CQ-5332-01 1 202407199 202407199 T C PPP1R12B Intron 0.29 TCGA-CQ-5332-01 1 214825109 214825109 C T CENPF Silent p.C2680C 0.27 TCGA-CQ-5332-01 1 215775490 215775490 A T KCTD3 Missense_Mutation p.D362V 0.39 deleterious(0) probably_damaging(0.999) TCGA-CQ-5332-01 1 215792410 215792410 A G KCTD3 Missense_Mutation p.K582R 0.14 tolerated(0.42) benign(0.003) TCGA-CQ-5332-01 1 232561495 232561495 C G SIPA1L2 Missense_Mutation p.E1490D 0.47 deleterious(0) probably_damaging(0.998) TCGA-CQ-5332-01 1 233394939 233394939 G A PCNXL2 Silent p.L223L 0.10 TCGA-CQ-5332-01 1 236572548 236572548 G A EDARADD Missense_Mutation p.D32N 0.34 deleterious(0) probably_damaging(0.998) TCGA-CQ-5332-01 1 31896555 31896555 G A SERINC2 Missense_Mutation p.G28S 0.62 tolerated(0.32) possibly_damaging(0.81) TCGA-CQ-5332-01 1 35580081 35580081 A G ZMYM1 Missense_Mutation p.I884V 0.72 tolerated(0.39) benign(0.01) TCGA-CQ-5332-01 1 36638137 36638137 G A MAP7D1 Missense_Mutation p.R178H 0.60 probably_damaging(0.999) TCGA-CQ-5332-01 1 7724919 7724919 A T CAMTA1 Missense_Mutation p.N771I 0.69 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CQ-5332-01 20 21492699 21492699 G T NKX2-2 Missense_Mutation p.F228L 0.27 tolerated(0.71) benign(0.031) TCGA-CQ-5332-01 20 45315483 45315483 C G TP53RK Missense_Mutation p.S224T 0.36 tolerated(0.2) benign(0.088) TCGA-CQ-5332-01 20 47266017 47266017 G A PREX1 Silent p.G1042G 0.50 TCGA-CQ-5332-01 20 60485513 60485513 C T CDH4 Silent p.T408T 0.24 TCGA-CQ-5332-01 20 60768650 60768650 G A MTG2 Silent p.P58P 0.11 TCGA-CQ-5332-01 20 62737451 62737451 C T NPBWR2 Missense_Mutation p.R245H 0.29 tolerated(0.83) benign(0.001) TCGA-CQ-5332-01 21 43221364 43221364 T A PRDM15 3'UTR 0.72 TCGA-CQ-5332-01 21 47971553 47971553 G T DIP2A Missense_Mutation p.G949V 0.75 deleterious(0) probably_damaging(0.998) TCGA-CQ-5332-01 22 23101561 23101561 T G IGLV2-14 Missense_Mutation p.V72G 0.24 tolerated_low_confidence(0.26) benign(0.031) TCGA-CQ-5332-01 22 50171411 50171411 C T BRD1 Missense_Mutation p.G839S 0.50 tolerated(0.62) benign(0) TCGA-CQ-5332-01 22 50728272 50728272 G A PLXNB2 Missense_Mutation p.R248C 0.60 deleterious(0) probably_damaging(1) TCGA-CQ-5332-01 2 106690370 106690370 C T C2orf40 Silent p.A52A 0.38 TCGA-CQ-5332-01 2 136528287 136528287 A G UBXN4 Missense_Mutation p.I268M 0.49 deleterious(0) possibly_damaging(0.777) TCGA-CQ-5332-01 2 170510628 170510628 G A CCDC173 Missense_Mutation p.R306C 0.50 tolerated(0.13) benign(0.001) TCGA-CQ-5332-01 2 179616133 179616133 G A TTN Intron 0.78 TCGA-CQ-5332-01 2 206869901 206869901 G A INO80D Missense_Mutation p.P759S 0.43 tolerated_low_confidence(0.36) benign(0.386) TCGA-CQ-5332-01 2 220501041 220501041 C A SLC4A3 Missense_Mutation p.L764M 0.73 tolerated(0.41) possibly_damaging(0.545) TCGA-CQ-5332-01 2 32476104 32476104 C T NLRC4 Missense_Mutation p.V277I 0.27 tolerated(0.28) probably_damaging(0.999) TCGA-CQ-5332-01 2 33500893 33500893 C G LTBP1 Missense_Mutation p.D965E 0.20 tolerated(0.53) benign(0.025) TCGA-CQ-5332-01 2 42836652 42836652 A G MTA3 Missense_Mutation p.Q82R 0.10 deleterious(0.04) benign(0.042) TCGA-CQ-5332-01 2 50318532 50318532 C T NRXN1 Missense_Mutation p.R1256H 0.23 deleterious(0) probably_damaging(0.967) TCGA-CQ-5332-01 2 61719576 61719576 T G XPO1 Missense_Mutation p.N536T 0.34 deleterious(0) probably_damaging(1) TCGA-CQ-5332-01 2 71838717 71838717 G T DYSF Missense_Mutation p.K1394N 0.12 deleterious(0) probably_damaging(0.988) TCGA-CQ-5332-01 2 71838718 71838718 A C DYSF Missense_Mutation p.N1395H 0.13 deleterious(0.01) possibly_damaging(0.712) TCGA-CQ-5332-01 2 96970578 96970578 C T SNRNP200 Missense_Mutation p.R25H 0.29 deleterious(0.01) possibly_damaging(0.556) TCGA-CQ-5332-01 3 126062647 126062647 G A KLF15 Missense_Mutation p.R392W 0.29 deleterious(0) possibly_damaging(0.861) TCGA-CQ-5332-01 3 147114186 147114186 G A ZIC4 Silent p.H97H 0.11 TCGA-CQ-5332-01 3 170716163 170716163 T A SLC2A2 Missense_Mutation p.Y398F 0.28 tolerated(0.12) probably_damaging(0.999) TCGA-CQ-5332-01 3 170716165 170716165 A G SLC2A2 Silent p.S397S 0.28 TCGA-CQ-5332-01 3 195711569 195711572 TGTC GTT SDHAP1 RNA 0.09 TCGA-CQ-5332-01 4 115891710 115891710 A T NDST4 Missense_Mutation p.L366H 0.38 tolerated(0.09) possibly_damaging(0.797) TCGA-CQ-5332-01 4 153247244 153247244 C G FBXW7 Missense_Mutation p.D520H 0.70 deleterious(0) probably_damaging(1) TCGA-CQ-5332-01 4 155459166 155459166 T C PLRG1 Missense_Mutation p.I416V 0.77 tolerated(0.52) benign(0.268) TCGA-CQ-5332-01 4 158254041 158254041 G T GRIA2 Missense_Mutation p.R318I 0.34 deleterious(0.01) possibly_damaging(0.693) TCGA-CQ-5332-01 4 5170173 5170173 C A STK32B Missense_Mutation p.L86M 0.33 deleterious(0.02) probably_damaging(1) TCGA-CQ-5332-01 4 57182512 57182512 C T KIAA1211 Silent p.H948H 0.43 TCGA-CQ-5332-01 4 82369372 82369372 G A RASGEF1B Nonsense_Mutation p.Q169* 0.31 TCGA-CQ-5332-01 5 140176805 140176805 G T PCDHA2 Missense_Mutation p.Q752H 0.65 deleterious_low_confidence(0.02) benign(0.204) TCGA-CQ-5332-01 5 169805970 169805970 T A KCNMB1 Missense_Mutation p.Y105F 0.61 deleterious(0.04) probably_damaging(0.989) TCGA-CQ-5332-01 5 178139206 178139206 G C ZNF354A Missense_Mutation p.T558S 0.63 tolerated(0.2) benign(0.052) TCGA-CQ-5332-01 5 19839171 19839171 A T CDH18 5'UTR 0.23 TCGA-CQ-5332-01 5 5319209 5319209 C T ADAMTS16 Silent p.Y1211Y 0.42 TCGA-CQ-5332-01 5 59284494 59284494 G A PDE4D Silent p.R31R 0.65 TCGA-CQ-5332-01 5 64946652 64946652 G A TRAPPC13 Silent p.V148V 0.68 TCGA-CQ-5332-01 5 9050539 9050539 T C SEMA5A Missense_Mutation p.E959G 0.48 deleterious(0.03) benign(0.146) TCGA-CQ-5332-01 6 118596680 118596680 T G SLC35F1 Missense_Mutation p.I232M 0.38 deleterious(0) probably_damaging(0.951) TCGA-CQ-5332-01 6 27791910 27791910 G T HIST1H4J Missense_Mutation p.G3V 0.08 tolerated_low_confidence(0.05) unknown(0) TCGA-CQ-5332-01 6 38862507 38862507 C T DNAH8 Missense_Mutation p.H2655Y 0.71 probably_damaging(1) TCGA-CQ-5332-01 6 53519694 53519694 G A KLHL31 Missense_Mutation p.A126V 0.16 tolerated(0.22) benign(0.257) TCGA-CQ-5332-01 7 11209139 11209139 G C PHF14 3'Flank 0.40 TCGA-CQ-5332-01 7 123302785 123302785 G C LMOD2 Missense_Mutation p.R382T 0.33 tolerated(0.19) possibly_damaging(0.584) TCGA-CQ-5332-01 7 139741483 139741483 C A PARP12 Missense_Mutation p.W381C 0.36 deleterious(0) probably_damaging(1) TCGA-CQ-5332-01 7 141408764 141408764 C T WEE2 Missense_Mutation p.S69F 0.06 tolerated(0.49) benign(0.007) TCGA-CQ-5332-01 7 141537030 141537030 C T PRSS37 Missense_Mutation p.R150Q 0.49 tolerated(0.3) benign(0.158) TCGA-CQ-5332-01 7 142198012 142198012 A T TRBV11-2 RNA 0.33 TCGA-CQ-5332-01 7 142575027 142575027 T A TRPV6 Missense_Mutation p.T119S 0.10 deleterious(0.01) possibly_damaging(0.583) TCGA-CQ-5332-01 7 37988563 37988563 T A EPDR1 Missense_Mutation p.S131T 0.18 deleterious(0) possibly_damaging(0.791) TCGA-CQ-5332-01 7 47342762 47342762 G A TNS3 Silent p.H1081H 0.15 TCGA-CQ-5332-01 7 4917507 4917507 G A RADIL Silent p.S88S 0.09 TCGA-CQ-5332-01 7 57509958 57509958 C T ZNF716 5'UTR 0.25 TCGA-CQ-5332-01 7 73152999 73152999 G A ABHD11 Silent p.G43G 0.50 TCGA-CQ-5332-01 7 76984631 76984631 A T GSAP Missense_Mutation p.L413I 0.41 deleterious(0) probably_damaging(0.985) TCGA-CQ-5332-01 7 82581457 82581457 C G PCLO Missense_Mutation p.A2938P 0.05 unknown(0) TCGA-CQ-5332-01 7 88963672 88963672 C T ZNF804B Missense_Mutation p.T459M 0.27 tolerated(0.05) probably_damaging(0.943) TCGA-CQ-5332-01 7 97821023 97821023 C T LMTK2 Missense_Mutation p.R416W 0.07 deleterious(0) probably_damaging(0.999) TCGA-CQ-5332-01 8 105025791 105025791 A T RIMS2 Missense_Mutation p.R1056W 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CQ-5332-01 8 131964216 131964216 C T ADCY8 Missense_Mutation p.R380Q 0.53 deleterious(0.04) possibly_damaging(0.766) TCGA-CQ-5332-01 8 139706770 139706770 T A COL22A1 Missense_Mutation p.Q894L 0.51 probably_damaging(0.967) TCGA-CQ-5332-01 8 146054860 146054860 C T ZNF7 Intron 0.60 TCGA-CQ-5332-01 8 82572902 82572902 C G IMPA1 Silent p.G248G 0.21 TCGA-CQ-5332-01 8 87951834 87951834 G A CNBD1 Missense_Mutation p.E95K 0.12 tolerated(0.4) benign(0.075) TCGA-CQ-5332-01 9 118973944 118973944 T C PAPPA Missense_Mutation p.Y551H 0.38 deleterious(0) possibly_damaging(0.727) TCGA-CQ-5332-01 9 130566689 130566689 G T FPGS Silent p.L88L 0.45 TCGA-CQ-5332-01 9 131396039 131396039 G T WDR34 Missense_Mutation p.A532E 0.38 tolerated(0.21) benign(0.003) TCGA-CQ-5332-01 9 6460622 6460622 C T UHRF2 Nonsense_Mutation p.R232* 0.56 TCGA-CQ-5332-01 9 71628058 71628058 C T PRKACG Silent p.P317P 0.66 TCGA-CQ-5332-01 9 84202720 84202720 C - TLE1 Frame_Shift_Del p.G618Efs*69 0.30 TCGA-CQ-5332-01 9 96294621 96294622 - T FAM120A Intron 0.28 TCGA-CQ-5332-01 X 109694160 109694160 G A RGAG1 Missense_Mutation p.M105I 0.75 deleterious(0) possibly_damaging(0.641) TCGA-CQ-5332-01 X 37028771 37028771 G A FAM47C Missense_Mutation p.R763H 0.72 tolerated(0.58) benign(0.002) TCGA-CQ-5332-01 X 50053854 50053854 T G CCNB3 Silent p.S895S 0.48 TCGA-CQ-5332-01 X 50121103 50121103 T A DGKK RNA 0.56 TCGA-CQ-5332-01 X 53622348 53622348 C T HUWE1 Missense_Mutation p.G1060D 0.67 probably_damaging(0.999) TCGA-CQ-5332-01 X 73962753 73962753 G A KIAA2022 Missense_Mutation p.R547C 0.71 deleterious(0) probably_damaging(1) TCGA-CQ-5333-01 10 102239703 102239703 G T WNT8B Missense_Mutation p.A59S 0.12 tolerated(0.2) benign(0.088) TCGA-CQ-5333-01 10 102739712 102739712 G A SEMA4G Missense_Mutation p.R364H 0.12 deleterious(0.01) possibly_damaging(0.901) TCGA-CQ-5333-01 10 105133311 105133311 C T TAF5 Silent p.V252V 0.12 TCGA-CQ-5333-01 10 105799374 105799374 G C COL17A1 Nonsense_Mutation p.S938* 0.24 TCGA-CQ-5333-01 10 108923961 108923961 C T SORCS1 Silent p.R108R 0.20 TCGA-CQ-5333-01 10 114177678 114177678 C T ACSL5 Silent p.F487F 0.12 TCGA-CQ-5333-01 10 116881500 116881500 G T ATRNL1 Missense_Mutation p.A139S 0.17 deleterious(0.02) probably_damaging(0.983) TCGA-CQ-5333-01 10 134219519 134219519 G A PWWP2B Silent p.P505P 0.11 TCGA-CQ-5333-01 10 27964480 27964480 G A MKX Missense_Mutation p.T281I 0.08 tolerated(0.33) benign(0.016) TCGA-CQ-5333-01 10 95347156 95347156 C T FFAR4 Silent p.F308F 0.16 TCGA-CQ-5333-01 11 1016697 1016697 G A MUC6 Missense_Mutation p.S2035F 0.07 benign(0.316) TCGA-CQ-5333-01 11 111839271 111839271 C T DIXDC1 Silent p.P75P 0.38 TCGA-CQ-5333-01 11 113130973 113130973 G A NCAM1 Missense_Mutation p.E736K 0.13 deleterious(0.02) probably_damaging(0.989) TCGA-CQ-5333-01 11 118369144 118369158 CAGCAACTATCACTT - KMT2A In_Frame_Del p.S1955_F1959del 0.12 TCGA-CQ-5333-01 11 118955862 118955862 C G HMBS Intron 0.25 TCGA-CQ-5333-01 11 119003681 119003681 C T HINFP Missense_Mutation p.S328F 0.23 deleterious(0) benign(0.345) TCGA-CQ-5333-01 11 120347948 120347948 G A ARHGEF12 Missense_Mutation p.R1129Q 0.10 tolerated(1) benign(0) TCGA-CQ-5333-01 11 122848393 122848393 G A BSX Silent p.D222D 0.12 TCGA-CQ-5333-01 11 130281428 130281428 C T ADAMTS8 Missense_Mutation p.G545E 0.12 deleterious(0) probably_damaging(1) TCGA-CQ-5333-01 11 17537815 17537815 G A USH1C Silent p.Y411Y 0.21 TCGA-CQ-5333-01 11 44950696 44950696 C G TSPAN18 Missense_Mutation p.I238M 0.18 deleterious(0.03) possibly_damaging(0.702) TCGA-CQ-5333-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.13 deleterious(0.02) probably_damaging(0.989) TCGA-CQ-5333-01 11 62294685 62294685 C G AHNAK Missense_Mutation p.G2402R 0.18 benign(0.144) TCGA-CQ-5333-01 11 67075902 67075902 C A SSH3 Missense_Mutation p.A345E 0.38 deleterious(0) probably_damaging(0.998) TCGA-CQ-5333-01 11 72945652 72945652 G T P2RY2 Missense_Mutation p.A150S 0.21 deleterious(0.03) probably_damaging(0.959) TCGA-CQ-5333-01 12 107415954 107415954 G C CRY1 Missense_Mutation p.L59V 0.15 deleterious(0.02) benign(0.381) TCGA-CQ-5333-01 12 111746110 111746110 G T CUX2 Silent p.L377L 0.23 TCGA-CQ-5333-01 12 130185231 130185231 C A TMEM132D Missense_Mutation p.R31L 0.08 deleterious(0.04) probably_damaging(0.979) TCGA-CQ-5333-01 12 14689560 14689560 C T PLBD1 Missense_Mutation p.G215S 0.14 tolerated(1) benign(0) TCGA-CQ-5333-01 12 43769222 43769222 G A ADAMTS20 Silent p.F1802F 0.15 TCGA-CQ-5333-01 12 53609533 53609533 G A RARG Missense_Mutation p.S77L 0.10 deleterious(0) benign(0.349) TCGA-CQ-5333-01 12 53876704 53876704 C T MAP3K12 Missense_Mutation p.R628H 0.12 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-CQ-5333-01 12 54764735 54764735 G A ZNF385A Silent p.V270V 0.13 TCGA-CQ-5333-01 12 66703855 66703855 G A HELB Missense_Mutation p.E383K 0.10 tolerated(1) benign(0) TCGA-CQ-5333-01 12 72068160 72068160 T G THAP2 Missense_Mutation p.C83W 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-CQ-5333-01 12 88588999 88588999 G T TMTC3 Missense_Mutation p.G773V 0.18 deleterious(0) possibly_damaging(0.508) TCGA-CQ-5333-01 13 21549414 21549414 G A LATS2 Silent p.S954S 0.12 TCGA-CQ-5333-01 13 26273442 26273442 C A ATP8A2 Missense_Mutation p.F781L 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CQ-5333-01 13 30110249 30110249 G A SLC7A1 Missense_Mutation p.T26M 0.11 deleterious(0) benign(0.276) TCGA-CQ-5333-01 13 36049604 36049604 C T MAB21L1 Silent p.S224S 0.10 TCGA-CQ-5333-01 13 39262646 39262646 C T FREM2 Missense_Mutation p.R389W 0.15 deleterious(0.05) benign(0.394) TCGA-CQ-5333-01 13 39546701 39546701 A C STOML3 Missense_Mutation p.V87G 0.14 deleterious(0.03) benign(0.44) TCGA-CQ-5333-01 13 58298781 58298781 C T PCDH17 Nonsense_Mutation p.R945* 0.17 TCGA-CQ-5333-01 14 102469281 102469281 G C DYNC1H1 Missense_Mutation p.R1621T 0.21 probably_damaging(0.996) TCGA-CQ-5333-01 14 102732227 102732227 G T MOK Silent p.R49R 0.13 TCGA-CQ-5333-01 14 23855643 23855643 G A MYH6 Silent p.L1614L 0.14 TCGA-CQ-5333-01 14 24683559 24683559 G C NEDD8-MDP1 Missense_Mutation p.F137L 0.08 deleterious(0) probably_damaging(0.968) TCGA-CQ-5333-01 14 47426671 47426671 G A MDGA2 Silent p.Y665Y 0.20 TCGA-CQ-5333-01 15 23261911 23261911 G C GOLGA8I Missense_Mutation p.E341D 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-CQ-5333-01 15 25924905 25924905 G T ATP10A Silent p.V1361V 0.07 TCGA-CQ-5333-01 15 27185171 27185171 C G GABRA5 Nonsense_Mutation p.S275* 0.23 TCGA-CQ-5333-01 15 34648868 34648868 C T NUTM1 Missense_Mutation p.P859S 0.12 tolerated(0.13) benign(0.003) TCGA-CQ-5333-01 15 40764195 40764195 C G CHST14 Silent p.P261P 0.17 TCGA-CQ-5333-01 15 41165441 41165441 C T RHOV Missense_Mutation p.E176K 0.09 tolerated(0.74) benign(0.062) TCGA-CQ-5333-01 15 43888797 43888797 G C CKMT1B Intron 0.12 TCGA-CQ-5333-01 15 44107241 44107241 C T MFAP1 Missense_Mutation p.E111K 0.17 deleterious(0.04) benign(0.292) TCGA-CQ-5333-01 15 56393610 56393610 T C RFX7 Missense_Mutation p.Y253C 0.23 deleterious(0.03) benign(0.066) TCGA-CQ-5333-01 15 62234017 62234017 G C VPS13C Missense_Mutation p.L1800V 0.15 tolerated(0.12) benign(0.049) TCGA-CQ-5333-01 15 74836400 74836400 G A ARID3B Silent p.L41L 0.21 TCGA-CQ-5333-01 15 91030268 91030268 C T IQGAP1 Silent p.F1369F 0.15 TCGA-CQ-5333-01 16 16146637 16146637 C A ABCC1 Silent p.V479V 0.11 TCGA-CQ-5333-01 16 2578096 2578096 G T AMDHD2 Missense_Mutation p.A222S 0.10 deleterious(0.02) possibly_damaging(0.868) TCGA-CQ-5333-01 16 29816601 29816601 C G KIF22 Silent p.L656L 0.15 TCGA-CQ-5333-01 16 31121413 31121413 C T BCKDK Missense_Mutation p.R131C 0.17 deleterious(0) probably_damaging(0.983) TCGA-CQ-5333-01 16 3819189 3819189 C A CREBBP Nonsense_Mutation p.E1016* 0.19 TCGA-CQ-5333-01 16 5053443 5053443 C T SEC14L5 Missense_Mutation p.R391W 0.11 deleterious(0) probably_damaging(0.989) TCGA-CQ-5333-01 16 5112513 5112513 G A C16orf89 Missense_Mutation p.R91C 0.17 deleterious(0) probably_damaging(0.947) TCGA-CQ-5333-01 16 52480095 52480095 C A TOX3 Missense_Mutation p.K239N 0.11 deleterious(0.04) probably_damaging(0.991) TCGA-CQ-5333-01 16 67210712 67210712 C T KIAA0895L 3'UTR 0.14 TCGA-CQ-5333-01 16 67650654 67650654 G A CTCF Missense_Mutation p.R320H 0.10 deleterious(0) possibly_damaging(0.821) TCGA-CQ-5333-01 16 75513163 75513163 G C CHST6 Silent p.L188L 0.15 TCGA-CQ-5333-01 16 83520131 83520131 C T CDH13 Silent p.T324T 0.12 TCGA-CQ-5333-01 17 10543998 10543998 C T MYH3 Missense_Mutation p.R724Q 0.19 tolerated(0.11) possibly_damaging(0.547) TCGA-CQ-5333-01 17 17697199 17697199 C T RAI1 Missense_Mutation p.H313Y 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-CQ-5333-01 17 1782580 1782580 G A RPA1 Silent p.E277E 0.10 TCGA-CQ-5333-01 17 18922828 18922828 C T SLC5A10 Missense_Mutation p.S461L 0.13 deleterious(0) benign(0.335) TCGA-CQ-5333-01 17 27380585 27380585 G A PIPOX Missense_Mutation p.R211H 0.14 tolerated(0.13) benign(0.035) TCGA-CQ-5333-01 17 3392544 3392544 C A ASPA Missense_Mutation p.P181H 0.10 deleterious(0) probably_damaging(1) TCGA-CQ-5333-01 17 37563838 37563838 T C MED1 Missense_Mutation p.M1546V 0.13 deleterious_low_confidence(0.04) unknown(0) TCGA-CQ-5333-01 17 42636594 42636594 G A FZD2 Missense_Mutation p.R513H 0.07 tolerated(0.23) benign(0.009) TCGA-CQ-5333-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.15 deleterious(0) probably_damaging(0.993) TCGA-CQ-5333-01 17 7917290 7917290 C T GUCY2D Nonsense_Mutation p.Q786* 0.13 TCGA-CQ-5333-01 18 13113697 13113697 C G CEP192 Missense_Mutation p.S2387C 0.24 tolerated(0.17) benign(0.188) TCGA-CQ-5333-01 18 44260196 44260196 C T ST8SIA5 Missense_Mutation p.E314K 0.13 benign(0.297) TCGA-CQ-5333-01 19 10363274 10363274 C G MRPL4 Missense_Mutation p.H58D 0.09 deleterious(0.05) benign(0.006) TCGA-CQ-5333-01 19 1122254 1122254 C A SBNO2 Nonsense_Mutation p.E345* 0.21 TCGA-CQ-5333-01 19 11944588 11944588 C T ZNF440 3'UTR 0.11 TCGA-CQ-5333-01 19 12059116 12059116 G A ZNF700 Missense_Mutation p.E93K 0.13 tolerated(0.2) probably_damaging(0.917) TCGA-CQ-5333-01 19 1271983 1271983 G A CIRBP Silent p.R145R 0.19 TCGA-CQ-5333-01 19 15302416 15302416 G T NOTCH3 Nonsense_Mutation p.C285* 0.09 TCGA-CQ-5333-01 19 17115116 17115116 C T CPAMD8 Missense_Mutation p.A261T 0.12 tolerated(1) benign(0.001) TCGA-CQ-5333-01 19 22941701 22941701 C A ZNF99 Missense_Mutation p.G337V 0.07 deleterious(0) probably_damaging(0.986) TCGA-CQ-5333-01 19 22941702 22941702 C A ZNF99 Nonsense_Mutation p.G337* 0.06 TCGA-CQ-5333-01 19 30502098 30502098 C G URI1 Missense_Mutation p.S378C 0.10 deleterious(0.01) benign(0.03) TCGA-CQ-5333-01 19 36211939 36211939 C T KMT2B Nonsense_Mutation p.R564* 0.57 TCGA-CQ-5333-01 19 3983151 3983151 G C EEF2 Silent p.L119L 0.10 TCGA-CQ-5333-01 19 3983263 3983263 G A EEF2 Missense_Mutation p.S82L 0.17 tolerated(0.28) benign(0.002) TCGA-CQ-5333-01 19 41888932 41888932 G C TMEM91 Intron 0.15 TCGA-CQ-5333-01 19 46281393 46281393 C G DMPK Missense_Mutation p.D233H 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-CQ-5333-01 19 46973192 46973192 C T PNMAL1 Silent p.V367V 0.14 TCGA-CQ-5333-01 19 52477744 52477744 C G ZNF350 5'UTR 0.21 TCGA-CQ-5333-01 19 53056494 53056494 G C ZNF808 Missense_Mutation p.E109Q 0.12 deleterious(0.03) benign(0.023) TCGA-CQ-5333-01 19 55378172 55378172 G C KIR3DL2 Missense_Mutation p.E452Q 0.14 tolerated_low_confidence(0.19) benign(0.289) TCGA-CQ-5333-01 19 55378190 55378190 G A KIR3DL2 3'UTR 0.15 TCGA-CQ-5333-01 19 881615 881615 G A MED16 Missense_Mutation p.S362L 0.15 tolerated(0.36) benign(0.012) TCGA-CQ-5333-01 1 152325211 152325211 G T FLG2 Nonsense_Mutation p.S1684* 0.13 TCGA-CQ-5333-01 1 153598850 153598850 G A S100A13 Silent p.L33L 0.15 TCGA-CQ-5333-01 1 156704058 156704058 G A RRNAD1 Silent p.L298L 0.25 TCGA-CQ-5333-01 1 182992966 182992966 G T LAMC1 Nonsense_Mutation p.E39* 0.27 TCGA-CQ-5333-01 1 183556034 183556034 C T NCF2 Missense_Mutation p.E85K 0.06 tolerated(0.17) benign(0.007) TCGA-CQ-5333-01 1 19992872 19992872 G T HTR6 Missense_Mutation p.C209F 0.14 tolerated(0.07) benign(0.035) TCGA-CQ-5333-01 1 210637960 210637960 G A HHAT Missense_Mutation p.R324H 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-CQ-5333-01 1 230795361 230795361 C G COG2 Nonsense_Mutation p.S75* 0.17 TCGA-CQ-5333-01 1 235292010 235292010 G A TOMM20 Silent p.A7A 0.16 TCGA-CQ-5333-01 1 237802319 237802319 G C RYR2 Missense_Mutation p.E2311D 0.12 probably_damaging(0.968) TCGA-CQ-5333-01 1 248616180 248616180 C G OR2T2 Missense_Mutation p.L28V 0.09 tolerated(0.13) benign(0) TCGA-CQ-5333-01 1 248844948 248844948 A G OR14I1 Missense_Mutation p.F220L 0.09 tolerated(0.05) possibly_damaging(0.516) TCGA-CQ-5333-01 1 26303187 26303187 C T PAFAH2 Silent p.K248K 0.22 TCGA-CQ-5333-01 1 27690449 27690449 C T MAP3K6 Missense_Mutation p.D275N 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-CQ-5333-01 1 27744792 27744792 G T WASF2 Missense_Mutation p.L133I 0.14 deleterious(0.01) unknown(0) TCGA-CQ-5333-01 1 35900587 35900587 C G KIAA0319L Missense_Mutation p.E1020Q 0.18 deleterious(0.01) possibly_damaging(0.697) TCGA-CQ-5333-01 1 3807459 3807459 C T C1orf174 Missense_Mutation p.E98K 0.18 tolerated(0.13) benign(0.076) TCGA-CQ-5333-01 1 38484767 38484767 G A UTP11L Missense_Mutation p.D127N 0.08 tolerated(0.06) benign(0.279) TCGA-CQ-5333-01 1 38485030 38485030 G C UTP11L Missense_Mutation p.G181A 0.17 tolerated(0.19) possibly_damaging(0.627) TCGA-CQ-5333-01 1 47400197 47400197 C G CYP4A11 Missense_Mutation p.Q275H 0.12 deleterious(0.02) benign(0.078) TCGA-CQ-5333-01 1 47400677 47400677 T G CYP4A11 Missense_Mutation p.H262P 0.15 deleterious(0) probably_damaging(0.969) TCGA-CQ-5333-01 1 64017452 64017452 G A EFCAB7 Missense_Mutation p.E335K 0.14 deleterious(0.01) benign(0.279) TCGA-CQ-5333-01 1 95310851 95310851 G C SLC44A3 Missense_Mutation p.L301F 0.13 deleterious(0) possibly_damaging(0.517) TCGA-CQ-5333-01 20 35559199 35559199 G C SAMHD1 Missense_Mutation p.L197V 0.12 deleterious(0) possibly_damaging(0.897) TCGA-CQ-5333-01 20 5974999 5974999 A - MCM8 Frame_Shift_Del p.G831Afs*17 0.20 TCGA-CQ-5333-01 20 60508098 60508098 G A CDH4 Silent p.T765T 0.10 TCGA-CQ-5333-01 20 62521284 62521284 C T TPD52L2 Missense_Mutation p.P226S 0.12 tolerated_low_confidence(0.57) benign(0.001) TCGA-CQ-5333-01 21 28338337 28338337 C T ADAMTS5 Missense_Mutation p.R125H 0.11 tolerated(0.1) benign(0.015) TCGA-CQ-5333-01 21 31744353 31744353 C A KRTAP13-2 Missense_Mutation p.C60F 0.11 tolerated(0.24) benign(0.042) TCGA-CQ-5333-01 21 38884218 38884218 G A DYRK1A Missense_Mutation p.R559H 0.18 tolerated_low_confidence(0.53) possibly_damaging(0.835) TCGA-CQ-5333-01 21 44317044 44317044 T A NDUFV3 Missense_Mutation p.L19H 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-CQ-5333-01 21 47422559 47422559 A G COL6A1 Missense_Mutation p.K790R 0.21 tolerated(0.82) benign(0.23) TCGA-CQ-5333-01 22 18022239 18022239 C T CECR2 Missense_Mutation p.R782C 0.16 deleterious(0) possibly_damaging(0.906) TCGA-CQ-5333-01 22 18347677 18347677 C T MICAL3 Missense_Mutation p.E865K 0.10 possibly_damaging(0.564) TCGA-CQ-5333-01 22 19196585 19196585 C G CLTCL1 Missense_Mutation p.E1097Q 0.21 tolerated(0.08) probably_damaging(1) TCGA-CQ-5333-01 22 25264420 25264420 C A SGSM1 Missense_Mutation p.H358N 0.16 deleterious(0.01) possibly_damaging(0.862) TCGA-CQ-5333-01 22 29838115 29838115 C T RFPL1 3'UTR 0.08 TCGA-CQ-5333-01 22 30690932 30690932 C A TBC1D10A Nonsense_Mutation p.E220* 0.18 TCGA-CQ-5333-01 22 30975207 30975207 C T PES1 Missense_Mutation p.E480K 0.21 tolerated(0.37) possibly_damaging(0.636) TCGA-CQ-5333-01 22 43195057 43195057 C T ARFGAP3 Silent p.V507V 0.13 TCGA-CQ-5333-01 22 45728404 45728404 C T FAM118A Silent p.S250S 0.17 TCGA-CQ-5333-01 22 50191666 50191666 C A BRD1 Nonsense_Mutation p.E629* 0.16 TCGA-CQ-5333-01 2 10059238 10059238 G C TAF1B Missense_Mutation p.R447T 0.13 deleterious(0) possibly_damaging(0.859) TCGA-CQ-5333-01 2 100623782 100623782 C T AFF3 Silent p.V130V 0.11 TCGA-CQ-5333-01 2 102805656 102805656 C G IL1RL2 Missense_Mutation p.S60C 0.13 tolerated(0.09) probably_damaging(0.935) TCGA-CQ-5333-01 2 10712233 10712233 C T NOL10 Silent p.L677L 0.13 TCGA-CQ-5333-01 2 109399178 109399178 C T RANBP2 Silent p.L3077L 0.13 TCGA-CQ-5333-01 2 144704677 144704677 G T GTDC1 Missense_Mutation p.A440E 0.15 tolerated(0.25) possibly_damaging(0.571) TCGA-CQ-5333-01 2 159518003 159518003 G A PKP4 Intron 0.20 TCGA-CQ-5333-01 2 159519946 159519946 G C PKP4 Missense_Mutation p.G856R 0.13 deleterious(0.01) probably_damaging(1) TCGA-CQ-5333-01 2 166852540 166852540 G C SCN1A Missense_Mutation p.P1522A 0.10 deleterious(0) probably_damaging(0.917) TCGA-CQ-5333-01 2 201994476 201994476 G A CFLAR 5'UTR 0.09 TCGA-CQ-5333-01 2 202149538 202149538 G C CASP8 Splice_Site p.X327_splice 0.16 TCGA-CQ-5333-01 2 202151270 202151270 C T CASP8 Nonsense_Mutation p.Q524* 0.15 TCGA-CQ-5333-01 2 219694951 219694951 G C PRKAG3 Missense_Mutation p.S128C 0.14 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-CQ-5333-01 2 232458247 232458247 G C C2orf57 Missense_Mutation p.E195D 0.17 tolerated(0.11) possibly_damaging(0.801) TCGA-CQ-5333-01 2 234545887 234545887 C T UGT1A10 Missense_Mutation p.T240M 0.28 deleterious(0) probably_damaging(0.999) TCGA-CQ-5333-01 2 44105071 44105071 C T ABCG8 3'UTR 0.06 TCGA-CQ-5333-01 2 67631576 67631576 G A ETAA1 Missense_Mutation p.E588K 0.13 deleterious(0.02) possibly_damaging(0.895) TCGA-CQ-5333-01 2 71740879 71740879 G A DYSF Missense_Mutation p.G196E 0.11 tolerated(0.38) possibly_damaging(0.747) TCGA-CQ-5333-01 2 74531626 74531626 G A SLC4A5 Silent p.I87I 0.15 TCGA-CQ-5333-01 2 74699186 74699186 C T MRPL53 3'UTR 0.09 TCGA-CQ-5333-01 2 80816547 80816547 A G CTNNA2 Missense_Mutation p.N709S 0.13 deleterious(0) probably_damaging(0.996) TCGA-CQ-5333-01 3 119101981 119101981 C T ARHGAP31 Missense_Mutation p.A197V 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-CQ-5333-01 3 12198897 12198897 G T TIMP4 Silent p.I75I 0.07 TCGA-CQ-5333-01 3 12779245 12779245 C T TMEM40 Missense_Mutation p.E145K 0.07 tolerated(0.05) possibly_damaging(0.629) TCGA-CQ-5333-01 3 129183550 129183550 C T IFT122 Silent p.G214G 0.21 TCGA-CQ-5333-01 3 152880888 152880888 G A RAP2B Missense_Mutation p.E136K 0.10 tolerated(0.86) benign(0.002) TCGA-CQ-5333-01 3 172166087 172166087 G A GHSR Silent p.P39P 0.12 TCGA-CQ-5333-01 3 178560474 178560474 G A KCNMB2 Missense_Mutation p.E153K 0.26 tolerated(0.59) benign(0.047) TCGA-CQ-5333-01 3 184090793 184090793 G C THPO Silent p.L190L 0.32 TCGA-CQ-5333-01 3 185797649 185797649 T C ETV5 Missense_Mutation p.M203V 0.12 tolerated(0.51) benign(0.016) TCGA-CQ-5333-01 3 187447612 187447612 G C BCL6 Missense_Mutation p.S194C 0.13 tolerated(0.1) benign(0.01) TCGA-CQ-5333-01 3 193185105 193185105 C A ATP13A4 Nonsense_Mutation p.G372* 0.11 TCGA-CQ-5333-01 3 194080244 194080244 C T LRRC15 Missense_Mutation p.S516N 0.15 tolerated(0.38) benign(0.116) TCGA-CQ-5333-01 3 195516850 195516850 G C MUC4 Missense_Mutation p.S534C 0.25 unknown(0) TCGA-CQ-5333-01 3 197665571 197665571 C T IQCG Silent p.P121P 0.22 TCGA-CQ-5333-01 3 36587704 36587704 G T STAC Nonsense_Mutation p.E378* 0.17 TCGA-CQ-5333-01 3 46307450 46307450 C G CCR3 Missense_Mutation p.I288M 0.25 tolerated(0.25) benign(0.023) TCGA-CQ-5333-01 3 49152992 49152992 C G USP19 Missense_Mutation p.E589D 0.23 tolerated(0.21) benign(0.159) TCGA-CQ-5333-01 3 49168546 49168546 C T LAMB2 Missense_Mutation p.R251H 0.15 deleterious(0) probably_damaging(0.987) TCGA-CQ-5333-01 3 49412948 49412948 G A RHOA Silent p.F25F 0.10 TCGA-CQ-5333-01 3 62254725 62254725 T C PTPRG Missense_Mutation p.Y964H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CQ-5333-01 4 10446619 10446619 G C ZNF518B Missense_Mutation p.S445C 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-CQ-5333-01 4 146563519 146563519 G T MMAA Missense_Mutation p.L148F 0.15 deleterious(0.04) possibly_damaging(0.819) TCGA-CQ-5333-01 4 159568024 159568024 C A RXFP1 Missense_Mutation p.A476E 0.12 tolerated(0.06) possibly_damaging(0.614) TCGA-CQ-5333-01 4 42524296 42524296 C G ATP8A1 Missense_Mutation p.A610P 0.06 deleterious(0) probably_damaging(0.999) TCGA-CQ-5333-01 4 86844894 86844894 G A ARHGAP24 Missense_Mutation p.R121H 0.10 deleterious(0.01) possibly_damaging(0.72) TCGA-CQ-5333-01 4 88534236 88534236 G A DSPP Missense_Mutation p.D300N 0.13 benign(0.421) TCGA-CQ-5333-01 4 88732603 88732603 C T IBSP Silent p.S165S 0.13 TCGA-CQ-5333-01 5 102490547 102490547 G C PPIP5K2 Missense_Mutation p.D435H 0.12 deleterious(0) probably_damaging(0.993) TCGA-CQ-5333-01 5 140308245 140308245 A T PCDHAC1 Missense_Mutation p.S590C 0.11 deleterious(0) probably_damaging(0.996) TCGA-CQ-5333-01 5 176308171 176308171 C T HK3 Missense_Mutation p.C892Y 0.12 deleterious(0.02) probably_damaging(1) TCGA-CQ-5333-01 5 176317843 176317843 G A HK3 Missense_Mutation p.H172Y 0.09 deleterious(0.01) possibly_damaging(0.85) TCGA-CQ-5333-01 5 176959554 176959554 C T FAM193B Missense_Mutation p.E389K 0.31 deleterious(0) probably_damaging(0.986) TCGA-CQ-5333-01 5 179229153 179229153 G A MGAT4B 5'UTR 0.09 TCGA-CQ-5333-01 5 180374749 180374750 - A BTNL8 Intron 0.13 TCGA-CQ-5333-01 5 22142991 22142991 C A CDH12 Intron 0.20 TCGA-CQ-5333-01 5 38481728 38481728 G T LIFR Missense_Mutation p.T1088K 0.17 deleterious(0.01) possibly_damaging(0.548) TCGA-CQ-5333-01 5 74035904 74035904 C G GFM2 Missense_Mutation p.G330A 0.10 deleterious(0) probably_damaging(1) TCGA-CQ-5333-01 5 87502921 87502921 C T TMEM161B Missense_Mutation p.G175R 0.12 deleterious(0) probably_damaging(0.956) TCGA-CQ-5333-01 6 101100668 101100668 C G ASCC3 Missense_Mutation p.G974A 0.16 deleterious(0.01) possibly_damaging(0.887) TCGA-CQ-5333-01 6 116565100 116565100 A T NT5DC1 Missense_Mutation p.R427S 0.12 tolerated(0.2) benign(0.002) TCGA-CQ-5333-01 6 13206093 13206093 G A PHACTR1 Silent p.S237S 0.15 TCGA-CQ-5333-01 6 133055617 133055617 A T VNN3 Splice_Site p.X71_splice 0.17 TCGA-CQ-5333-01 6 134312437 134312437 C T SLC2A12 Silent p.V570V 0.12 TCGA-CQ-5333-01 6 136470273 136470273 G A PDE7B Missense_Mutation p.D123N 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-CQ-5333-01 6 136597547 136597547 C T BCLAF1 Silent p.E372E 0.07 TCGA-CQ-5333-01 6 152583231 152583231 T C SYNE1 Missense_Mutation p.H6303R 0.14 benign(0.004) TCGA-CQ-5333-01 6 154412438 154412438 G A OPRM1 Missense_Mutation p.C425Y 0.17 deleterious(0) probably_damaging(0.946) TCGA-CQ-5333-01 6 1742748 1742748 G A GMDS Missense_Mutation p.R282W 0.18 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-CQ-5333-01 6 32629142 32629142 G A HLA-DQB1 Missense_Mutation p.R252C 0.09 deleterious(0.04) possibly_damaging(0.677) TCGA-CQ-5333-01 6 35248906 35248906 G C ZNF76 5'UTR 0.07 TCGA-CQ-5333-01 6 41121819 41121819 A G TREML1 Missense_Mutation p.I18T 0.12 tolerated(0.29) benign(0.034) TCGA-CQ-5333-01 6 45405688 45405688 G C RUNX2 Missense_Mutation p.K195N 0.12 deleterious(0) probably_damaging(0.999) TCGA-CQ-5333-01 6 72596767 72596767 C T RIMS1 Missense_Mutation p.T14M 0.09 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-CQ-5333-01 6 82900848 82900848 T A IBTK Missense_Mutation p.N1173Y 0.13 deleterious(0.02) benign(0.281) TCGA-CQ-5333-01 6 97000466 97000466 C G UFL1 Silent p.T698T 0.12 TCGA-CQ-5333-01 7 100204123 100204123 C A PCOLCE Nonsense_Mutation p.Y270* 0.12 TCGA-CQ-5333-01 7 121943740 121943740 C T FEZF1 Missense_Mutation p.G251D 0.09 deleterious(0.02) benign(0.116) TCGA-CQ-5333-01 7 135378967 135378967 G A SLC13A4 Silent p.L346L 0.13 TCGA-CQ-5333-01 7 139258011 139258011 G C HIPK2 Missense_Mutation p.L1087V 0.13 deleterious(0.04) probably_damaging(0.99) TCGA-CQ-5333-01 7 148950826 148950826 C G ZNF212 Missense_Mutation p.L270V 0.16 tolerated(0.48) benign(0.118) TCGA-CQ-5333-01 7 150648846 150648846 G A KCNH2 Silent p.Y545Y 0.15 TCGA-CQ-5333-01 7 4116726 4116726 C T SDK1 Missense_Mutation p.S1036L 0.12 deleterious(0) benign(0.008) TCGA-CQ-5333-01 7 44619144 44619144 G A TMED4 Silent p.L206L 0.10 TCGA-CQ-5333-01 7 5567249 5567249 C G ACTB 3'UTR 0.26 TCGA-CQ-5333-01 7 5567464 5567464 G C ACTB Missense_Mutation p.S348W 0.13 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CQ-5333-01 7 5567507 5567507 C T ACTB Missense_Mutation p.E334K 0.30 deleterious_low_confidence(0.03) benign(0.004) TCGA-CQ-5333-01 7 77256106 77256106 C G PTPN12 Silent p.P370P 0.13 TCGA-CQ-5333-01 7 82584850 82584851 - T PCLO Frame_Shift_Ins p.S1807Ifs*7 0.12 TCGA-CQ-5333-01 7 98988876 98988876 G A ARPC1B Silent p.A261A 0.25 TCGA-CQ-5333-01 8 113562942 113562942 C T CSMD3 Missense_Mutation p.D1508N 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-CQ-5333-01 8 144654286 144654286 C T MROH6 Missense_Mutation p.E122K 0.14 tolerated(0.07) benign(0.36) TCGA-CQ-5333-01 8 19277993 19277993 C T CSGALNACT1 Silent p.L330L 0.16 TCGA-CQ-5333-01 8 19811639 19811639 C G LPL Missense_Mutation p.P184A 0.12 deleterious(0) benign(0.314) TCGA-CQ-5333-01 8 57079803 57079803 G T PLAG1 Missense_Mutation p.H168N 0.16 deleterious(0) probably_damaging(0.932) TCGA-CQ-5333-01 8 57354189 57354189 G A PENK Missense_Mutation p.S149L 0.17 deleterious(0.05) benign(0.028) TCGA-CQ-5333-01 8 62496531 62496531 A T ASPH Missense_Mutation p.L345H 0.20 deleterious(0) probably_damaging(1) TCGA-CQ-5333-01 8 6372251 6372251 G A ANGPT2 Nonsense_Mutation p.R327* 0.16 TCGA-CQ-5333-01 8 82359690 82359690 C T PMP2 5'UTR 0.13 TCGA-CQ-5333-01 9 106864294 106864294 G T SMC2 Missense_Mutation p.L230F 0.11 deleterious(0.03) possibly_damaging(0.548) TCGA-CQ-5333-01 9 113213614 113213614 C T SVEP1 Missense_Mutation p.D1286N 0.07 probably_damaging(0.96) TCGA-CQ-5333-01 9 117664 117664 G A FOXD4 Silent p.I152I 0.07 TCGA-CQ-5333-01 9 131670253 131670253 C T LRRC8A Silent p.I270I 0.16 TCGA-CQ-5333-01 9 131860841 131860841 C T CRAT Missense_Mutation p.D392N 0.18 tolerated(0.09) benign(0.163) TCGA-CQ-5333-01 9 139412235 139412235 C T NOTCH1 Silent p.Q470Q 0.07 TCGA-CQ-5333-01 9 139412278 139412278 C T NOTCH1 Missense_Mutation p.C456Y 0.13 deleterious(0) probably_damaging(1) TCGA-CQ-5333-01 9 35101723 35101724 AG - STOML2 Frame_Shift_Del p.L143Gfs*23 0.16 TCGA-CQ-5333-01 9 35737723 35737723 G C GBA2 Intron 0.13 TCGA-CQ-5333-01 9 35738153 35738153 G A GBA2 Intron 0.17 TCGA-CQ-5333-01 9 35738164 35738164 G A GBA2 Intron 0.16 TCGA-CQ-5333-01 9 90500020 90500020 G A SPATA31E1 Silent p.P206P 0.13 TCGA-CQ-5333-01 X 100275562 100275562 G A TRMT2B Missense_Mutation p.S361F 0.33 deleterious(0) benign(0.285) TCGA-CQ-5333-01 X 118724262 118724262 A C NKRF Missense_Mutation p.W391G 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-CQ-5333-01 X 125685553 125685553 G A DCAF12L1 Nonsense_Mutation p.R347* 0.27 TCGA-CQ-5333-01 X 30326446 30326446 C A NR0B1 Silent p.P345P 0.37 TCGA-CQ-5333-01 X 591605 591605 C T SHOX 5'UTR 0.15 TCGA-CQ-5333-01 X 68058576 68058576 G C EFNB1 Missense_Mutation p.R82P 0.20 tolerated(0.41) possibly_damaging(0.852) TCGA-CQ-5333-01 X 74670646 74670646 C A ZDHHC15 Nonsense_Mutation p.G124* 0.20 TCGA-CQ-5334-01 10 103190136 103190136 C G BTRC Missense_Mutation p.S28C 0.08 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-CQ-5334-01 10 103530279 103530279 G A FGF8 Missense_Mutation p.A181V 0.20 deleterious(0) possibly_damaging(0.897) TCGA-CQ-5334-01 10 33211192 33211192 G A ITGB1 Missense_Mutation p.A374V 0.18 deleterious(0) probably_damaging(0.971) TCGA-CQ-5334-01 10 33211193 33211193 C A ITGB1 Missense_Mutation p.A374S 0.18 deleterious(0.02) possibly_damaging(0.573) TCGA-CQ-5334-01 10 61112119 61112119 C T FAM13C Missense_Mutation p.V79I 0.14 deleterious_low_confidence(0.01) benign(0.008) TCGA-CQ-5334-01 10 61112150 61112150 C T FAM13C Silent p.Q68Q 0.13 TCGA-CQ-5334-01 10 75856965 75856965 C A VCL Missense_Mutation p.L583I 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-CQ-5334-01 10 75857067 75857067 C T VCL Missense_Mutation p.P617S 0.17 tolerated(0.73) benign(0.016) TCGA-CQ-5334-01 10 91099031 91099031 C T IFIT3 Nonsense_Mutation p.Q207* 0.23 TCGA-CQ-5334-01 11 117161343 117161343 C T BACE1 Silent p.T375T 0.27 TCGA-CQ-5334-01 11 118630664 118630664 G A DDX6 Silent p.S277S 0.33 TCGA-CQ-5334-01 11 128846491 128846491 C G ARHGAP32 Missense_Mutation p.E707Q 0.19 deleterious(0) possibly_damaging(0.543) TCGA-CQ-5334-01 11 134128424 134128424 G A ACAD8 Missense_Mutation p.M132I 0.37 tolerated(0.09) benign(0.02) TCGA-CQ-5334-01 11 20658775 20658775 C T SLC6A5 Missense_Mutation p.R599C 0.31 deleterious(0.02) probably_damaging(0.987) TCGA-CQ-5334-01 11 27389780 27389780 G A LGR4 Silent p.I830I 0.17 TCGA-CQ-5334-01 11 47200778 47200778 C T PACSIN3 Missense_Mutation p.E278K 0.32 tolerated(0.1) benign(0.021) TCGA-CQ-5334-01 11 57319916 57319916 G A UBE2L6 Missense_Mutation p.A126V 0.18 deleterious(0.01) possibly_damaging(0.639) TCGA-CQ-5334-01 11 61541579 61541579 C T MYRF Missense_Mutation p.T419M 0.22 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 11 7324466 7324466 C T SYT9 Silent p.D114D 0.23 TCGA-CQ-5334-01 12 107236437 107236437 G C RIC8B Missense_Mutation p.E303Q 0.16 tolerated(0.27) possibly_damaging(0.479) TCGA-CQ-5334-01 12 124839420 124839420 G A NCOR2 Silent p.T1149T 0.19 TCGA-CQ-5334-01 12 126139056 126139056 C T TMEM132B Missense_Mutation p.P1013S 0.16 tolerated(0.24) possibly_damaging(0.623) TCGA-CQ-5334-01 12 130185047 130185047 G A TMEM132D Silent p.V92V 0.20 TCGA-CQ-5334-01 12 131359130 131359133 TTAC - RAN Frame_Shift_Del p.Y98Rfs*33 0.24 TCGA-CQ-5334-01 12 21015468 21015468 G C SLCO1B3 Missense_Mutation p.E202Q 0.15 deleterious(0.02) probably_damaging(0.952) TCGA-CQ-5334-01 12 28458663 28458663 C G CCDC91 Missense_Mutation p.S64C 0.20 tolerated(0.08) benign(0.009) TCGA-CQ-5334-01 12 29920863 29920863 G C TMTC1 Missense_Mutation p.L150V 0.23 deleterious(0.01) possibly_damaging(0.495) TCGA-CQ-5334-01 12 56334131 56334131 G T DGKA Nonsense_Mutation p.E278* 0.17 TCGA-CQ-5334-01 12 56486845 56486845 G C ERBB3 Missense_Mutation p.G420A 0.18 deleterious(0) probably_damaging(0.999) TCGA-CQ-5334-01 12 7526210 7526210 C T CD163L1 Missense_Mutation p.E1146K 0.12 tolerated(0.08) benign(0.222) TCGA-CQ-5334-01 12 95501371 95501371 G C FGD6 Missense_Mutation p.R1101G 0.16 tolerated(0.23) benign(0.276) TCGA-CQ-5334-01 13 109496715 109496715 C T MYO16 Silent p.A352A 0.12 TCGA-CQ-5334-01 13 27845676 27845676 A G RASL11A Silent p.T60T 0.08 TCGA-CQ-5334-01 13 31495735 31495736 - A MEDAG Frame_Shift_Ins p.G181Rfs*3 0.13 TCGA-CQ-5334-01 13 32977300 32977300 G A N4BP2L1 Nonsense_Mutation p.R171* 0.22 TCGA-CQ-5334-01 13 37007189 37007189 A G CCNA1 Missense_Mutation p.E43G 0.18 deleterious_low_confidence(0.01) benign(0.018) TCGA-CQ-5334-01 13 76287355 76287355 G T RP11-29G8.3 RNA 0.09 TCGA-CQ-5334-01 14 103802212 103802212 C G EIF5 Silent p.V5V 0.23 TCGA-CQ-5334-01 14 105849196 105849196 C T PACS2 Missense_Mutation p.S524F 0.28 tolerated(0.1) possibly_damaging(0.789) TCGA-CQ-5334-01 14 19562013 19562013 T C POTEG Missense_Mutation p.L277S 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-CQ-5334-01 14 24108117 24108117 C T DHRS2 Missense_Mutation p.P15L 0.36 deleterious_low_confidence(0.03) benign(0.234) TCGA-CQ-5334-01 14 31588931 31588931 C G HECTD1 Missense_Mutation p.E1794Q 0.26 deleterious(0.01) benign(0.156) TCGA-CQ-5334-01 14 64560106 64560106 G A SYNE2 Missense_Mutation p.E4006K 0.35 benign(0.076) TCGA-CQ-5334-01 14 67850070 67850070 G A EIF2S1 Silent p.A287A 0.10 TCGA-CQ-5334-01 14 77930945 77930945 C A AHSA1 Missense_Mutation p.F159L 0.34 deleterious(0) probably_damaging(0.999) TCGA-CQ-5334-01 14 95677035 95677035 G A CLMN Silent p.L264L 0.07 TCGA-CQ-5334-01 15 24924140 24924140 G C NPAP1 Missense_Mutation p.Q1042H 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.901) TCGA-CQ-5334-01 15 34395158 34395158 G A PGBD4 Silent p.S142S 0.22 TCGA-CQ-5334-01 15 52356502 52356502 G A MAPK6 Missense_Mutation p.G491S 0.19 tolerated_low_confidence(0.58) benign(0.007) TCGA-CQ-5334-01 15 68695271 68695271 G C ITGA11 Missense_Mutation p.I50M 0.25 deleterious(0.04) possibly_damaging(0.541) TCGA-CQ-5334-01 15 69689821 69689821 A G PAQR5 Missense_Mutation p.Q176R 0.11 tolerated(0.05) benign(0.009) TCGA-CQ-5334-01 15 74328369 74328369 C G PML Intron 0.18 TCGA-CQ-5334-01 15 90320353 90320354 AC - MESP2 Frame_Shift_Del p.Q256Vfs*110 0.27 TCGA-CQ-5334-01 15 91181798 91181798 C T CRTC3 Missense_Mutation p.R463C 0.20 tolerated(0.08) possibly_damaging(0.513) TCGA-CQ-5334-01 15 99251204 99251204 G T IGF1R Missense_Mutation p.V170L 0.08 tolerated(0.11) benign(0.012) TCGA-CQ-5334-01 16 21698871 21698871 C T OTOA Silent p.I179I 0.17 TCGA-CQ-5334-01 16 30093814 30093814 G A PPP4C Missense_Mutation p.D54N 0.08 deleterious(0.01) benign(0.346) TCGA-CQ-5334-01 16 31088997 31088997 A G ZNF646 Missense_Mutation p.K451R 0.15 tolerated(0.32) benign(0.003) TCGA-CQ-5334-01 16 4909145 4909145 G C UBN1 Missense_Mutation p.K184N 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-CQ-5334-01 16 50745595 50745595 C T NOD2 Silent p.V591V 0.14 TCGA-CQ-5334-01 16 57015105 57015105 G C CETP Missense_Mutation p.K394N 0.23 tolerated(0.08) benign(0.031) TCGA-CQ-5334-01 16 66973244 66973244 G C CES2 Missense_Mutation p.E200Q 0.21 deleterious(0.03) benign(0.444) TCGA-CQ-5334-01 16 67418858 67418858 G A LRRC36 Missense_Mutation p.E711K 0.22 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CQ-5334-01 16 67650751 67650751 G A CTCF Silent p.K352K 0.08 TCGA-CQ-5334-01 16 67655479 67655479 C T CTCF Nonsense_Mutation p.R448* 0.16 TCGA-CQ-5334-01 16 68405851 68405851 C T SMPD3 Silent p.A78A 0.28 TCGA-CQ-5334-01 16 69373717 69373717 C T NIP7 5'UTR 0.18 TCGA-CQ-5334-01 16 69383442 69383442 G C TMED6 Missense_Mutation p.S109C 0.19 tolerated(0.13) possibly_damaging(0.726) TCGA-CQ-5334-01 16 77465453 77465453 G A ADAMTS18 Silent p.H78H 0.06 TCGA-CQ-5334-01 16 87874057 87874057 C T SLC7A5 Missense_Mutation p.E265K 0.13 deleterious(0) benign(0.17) TCGA-CQ-5334-01 17 17248203 17248203 C T NT5M Silent p.D175D 0.23 TCGA-CQ-5334-01 17 19555870 19555870 G C ALDH3A2 Silent p.V132V 0.16 TCGA-CQ-5334-01 17 41143656 41143656 C T RUNDC1 Missense_Mutation p.R589C 0.28 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 17 43923775 43923775 G T SPPL2C Missense_Mutation p.L501F 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 17 5264712 5264712 C A RABEP1 Missense_Mutation p.D435E 0.15 deleterious(0.04) benign(0.017) TCGA-CQ-5334-01 17 59999129 59999129 T C INTS2 Silent p.V172V 0.18 TCGA-CQ-5334-01 17 61908892 61908892 T - PSMC5 Frame_Shift_Del p.S333Lfs*4 0.18 TCGA-CQ-5334-01 17 64299053 64299053 G A PRKCA Silent p.Q28Q 0.40 TCGA-CQ-5334-01 17 74392877 74392877 A G UBE2O Missense_Mutation p.I714T 0.21 deleterious(0.04) benign(0.075) TCGA-CQ-5334-01 17 7578433 7578433 G C TP53 Nonsense_Mutation p.S166* 0.22 TCGA-CQ-5334-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.11 tolerated(0.1) benign(0.438) TCGA-CQ-5334-01 17 79686897 79686897 G A SLC25A10 Missense_Mutation p.G257R 0.21 deleterious(0) probably_damaging(0.998) TCGA-CQ-5334-01 17 79826720 79826720 C A ARHGDIA 3'UTR 0.26 TCGA-CQ-5334-01 17 8159892 8159892 G A PFAS Missense_Mutation p.R291Q 0.21 tolerated(0.66) benign(0.003) TCGA-CQ-5334-01 18 28923432 28923432 C T DSG1 Silent p.I569I 0.18 TCGA-CQ-5334-01 18 29847783 29847783 C G GAREM 3'UTR 0.33 TCGA-CQ-5334-01 18 31326595 31326595 C T ASXL3 3'UTR 0.24 TCGA-CQ-5334-01 18 34156443 34156443 G A FHOD3 Missense_Mutation p.G181R 0.20 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 18 47015908 47015908 C G RPL17 Missense_Mutation p.D110H 0.26 deleterious(0.01) benign(0.163) TCGA-CQ-5334-01 18 5415859 5415859 G A EPB41L3 Silent p.S675S 0.19 TCGA-CQ-5334-01 18 909477 909477 C T ADCYAP1 Silent p.D124D 0.27 TCGA-CQ-5334-01 19 1235906 1235906 G A C19orf26 Silent p.D39D 0.24 TCGA-CQ-5334-01 19 13220597 13220598 CA - TRMT1 Frame_Shift_Del p.C387Wfs*17 0.10 TCGA-CQ-5334-01 19 14262302 14262302 G A LPHN1 Nonsense_Mutation p.R1270* 0.19 TCGA-CQ-5334-01 19 36214893 36214894 - C KMT2B Frame_Shift_Ins p.R1109Pfs*4 0.35 TCGA-CQ-5334-01 19 39019003 39019003 C T RYR1 Missense_Mutation p.R3628C 0.32 benign(0.34) TCGA-CQ-5334-01 19 39103292 39103292 C A MAP4K1 Silent p.L208L 0.21 TCGA-CQ-5334-01 19 47589696 47589696 G C ZC3H4 Missense_Mutation p.S272C 0.16 probably_damaging(0.987) TCGA-CQ-5334-01 19 50436276 50436276 G A ATF5 Missense_Mutation p.R259H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CQ-5334-01 19 56703265 56703265 C T ZSCAN5B Missense_Mutation p.R181Q 0.20 tolerated(0.73) benign(0.015) TCGA-CQ-5334-01 19 5749165 5749165 C T CATSPERD Silent p.L320L 0.25 TCGA-CQ-5334-01 19 58596360 58596360 G A ZSCAN18 Missense_Mutation p.R465C 0.50 deleterious(0.03) probably_damaging(0.917) TCGA-CQ-5334-01 1 120283058 120283058 G A PHGDH Nonsense_Mutation p.W332* 0.53 TCGA-CQ-5334-01 1 120283059 120283059 G A PHGDH Nonsense_Mutation p.W332* 0.53 TCGA-CQ-5334-01 1 147091006 147091006 G A BCL9 Missense_Mutation p.D349N 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-CQ-5334-01 1 151861698 151861699 - C THEM4 Frame_Shift_Ins p.P147Tfs*15 0.17 TCGA-CQ-5334-01 1 153043109 153043109 C T SPRR2B Silent p.P69P 0.16 TCGA-CQ-5334-01 1 153520180 153520180 G C S100A3 Nonsense_Mutation p.S95* 0.18 TCGA-CQ-5334-01 1 153520231 153520231 G C S100A3 Nonsense_Mutation p.S78* 0.18 TCGA-CQ-5334-01 1 158325689 158325689 C T CD1E Missense_Mutation p.S233L 0.11 deleterious(0.01) possibly_damaging(0.82) TCGA-CQ-5334-01 1 160063016 160063016 C T IGSF8 Missense_Mutation p.R337H 0.24 tolerated(0.32) benign(0.002) TCGA-CQ-5334-01 1 160389273 160389273 C A VANGL2 Missense_Mutation p.A225D 0.20 deleterious(0) probably_damaging(0.999) TCGA-CQ-5334-01 1 160793987 160793987 C G LY9 Missense_Mutation p.S616C 0.25 deleterious(0.01) benign(0.067) TCGA-CQ-5334-01 1 16359745 16359745 G C CLCNKA Missense_Mutation p.W670C 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-CQ-5334-01 1 16464347 16464347 C A EPHA2 Splice_Site p.X438_splice 0.42 TCGA-CQ-5334-01 1 17674531 17674531 C G PADI4 Missense_Mutation p.I381M 0.22 tolerated(0.55) benign(0.17) TCGA-CQ-5334-01 1 183086470 183086470 G A LAMC1 Missense_Mutation p.R527H 0.09 tolerated(0.22) benign(0.001) TCGA-CQ-5334-01 1 214818774 214818774 C T CENPF Missense_Mutation p.S1954L 0.18 benign(0.011) TCGA-CQ-5334-01 1 248263205 248263205 C A OR2L13 Missense_Mutation p.F176L 0.15 deleterious(0) possibly_damaging(0.619) TCGA-CQ-5334-01 1 26801616 26801616 G A HMGN2 Missense_Mutation p.E84K 0.16 deleterious(0.02) benign(0) TCGA-CQ-5334-01 1 34003072 34003072 C G CSMD2 Missense_Mutation p.D3113H 0.12 deleterious(0) probably_damaging(0.983) TCGA-CQ-5334-01 1 38227248 38227248 C T EPHA10 Missense_Mutation p.E227K 0.41 deleterious(0.05) probably_damaging(0.949) TCGA-CQ-5334-01 1 54513022 54513022 C G TMEM59 Missense_Mutation p.Q71H 0.16 tolerated(0.41) probably_damaging(0.968) TCGA-CQ-5334-01 1 63052175 63052175 T G DOCK7 Intron 0.20 TCGA-CQ-5334-01 1 64034060 64034060 G T EFCAB7 Missense_Mutation p.G526V 0.24 tolerated(0.41) benign(0.075) TCGA-CQ-5334-01 1 68512777 68512777 C T DIRAS3 Silent p.P68P 0.24 TCGA-CQ-5334-01 1 68948554 68948554 C G DEPDC1 Missense_Mutation p.D313H 0.16 tolerated(0.06) benign(0.004) TCGA-CQ-5334-01 20 22563766 22563766 G A FOXA2 Silent p.N38N 0.20 TCGA-CQ-5334-01 20 31620810 31620810 G A BPIFB6 Missense_Mutation p.E40K 0.17 deleterious(0.03) possibly_damaging(0.811) TCGA-CQ-5334-01 20 34430552 34430552 C G PHF20 Missense_Mutation p.F47L 0.15 deleterious(0.05) benign(0.026) TCGA-CQ-5334-01 20 37356976 37356976 C T SLC32A1 Silent p.G424G 0.26 TCGA-CQ-5334-01 20 43129936 43129936 C T SERINC3 Missense_Mutation p.R354H 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-CQ-5334-01 20 50158922 50158922 C T NFATC2 Silent p.L39L 0.16 TCGA-CQ-5334-01 20 57766301 57766301 C T ZNF831 Missense_Mutation p.P76L 0.19 deleterious(0) probably_damaging(0.932) TCGA-CQ-5334-01 21 10863052 10863052 G C IGHV1OR21-1 Silent p.V116V 0.06 TCGA-CQ-5334-01 21 34925097 34925097 C T SON Missense_Mutation p.S1187L 0.19 benign(0.307) TCGA-CQ-5334-01 21 47831965 47831965 T A PCNT Missense_Mutation p.V1993D 0.23 benign(0.014) TCGA-CQ-5334-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.17 deleterious(0) probably_damaging(0.999) TCGA-CQ-5334-01 22 29738276 29738276 G A AP1B1 Nonsense_Mutation p.Q512* 0.14 TCGA-CQ-5334-01 22 33733713 33733713 C T LARGE Silent p.L402L 0.35 TCGA-CQ-5334-01 22 42269956 42269956 G A SREBF2 Missense_Mutation p.R341Q 0.19 deleterious(0) probably_damaging(0.992) TCGA-CQ-5334-01 22 43019858 43019858 C T CYB5R3 Missense_Mutation p.E257K 0.28 tolerated(0.13) possibly_damaging(0.884) TCGA-CQ-5334-01 22 50941937 50941937 G A LMF2 Silent p.V669V 0.26 TCGA-CQ-5334-01 2 101622470 101622470 G A RPL31 Missense_Mutation p.D95N 0.22 tolerated(0.06) benign(0.182) TCGA-CQ-5334-01 2 107460350 107460350 G C ST6GAL2 Missense_Mutation p.I28M 0.22 possibly_damaging(0.494) TCGA-CQ-5334-01 2 120373262 120373262 C T PCDP1 Missense_Mutation p.R463W 0.10 deleterious(0) probably_damaging(0.992) TCGA-CQ-5334-01 2 141115599 141115599 C A LRP1B Missense_Mutation p.D3782Y 0.28 probably_damaging(0.961) TCGA-CQ-5334-01 2 158595074 158595074 C G ACVR1 Missense_Mutation p.E425Q 0.15 deleterious(0.03) probably_damaging(1) TCGA-CQ-5334-01 2 198949131 198949131 G A PLCL1 Missense_Mutation p.R297H 0.21 tolerated(0.29) benign(0.006) TCGA-CQ-5334-01 2 201846381 201846381 G A FAM126B Missense_Mutation p.S402L 0.13 tolerated(0.31) benign(0.022) TCGA-CQ-5334-01 2 201846438 201846438 G A FAM126B Missense_Mutation p.S383L 0.16 tolerated(0.36) benign(0) TCGA-CQ-5334-01 2 202131210 202131210 A G CASP8 Missense_Mutation p.M60V 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-CQ-5334-01 2 209194623 209194623 G C PIKFYVE Missense_Mutation p.E1259D 0.19 deleterious(0) probably_damaging(0.995) TCGA-CQ-5334-01 2 220029051 220029051 G C SLC23A3 Missense_Mutation p.Q401E 0.22 deleterious(0) benign(0.158) TCGA-CQ-5334-01 2 220344508 220344508 C T SPEG Missense_Mutation p.R1697W 0.13 probably_damaging(0.997) TCGA-CQ-5334-01 2 223494891 223494891 T G FARSB Silent p.A263A 0.19 TCGA-CQ-5334-01 2 232081419 232081419 G C ARMC9 Missense_Mutation p.L139F 0.18 deleterious(0.04) probably_damaging(0.955) TCGA-CQ-5334-01 2 26502944 26502944 G T HADHB Missense_Mutation p.K298N 0.19 deleterious(0) probably_damaging(0.978) TCGA-CQ-5334-01 2 26502945 26502945 C A HADHB Missense_Mutation p.P299T 0.17 deleterious(0.01) probably_damaging(1) TCGA-CQ-5334-01 2 28634936 28634949 CCCCAGCCCCTGGG - FOSL2 Frame_Shift_Del p.P202Afs*52 0.23 TCGA-CQ-5334-01 2 55825607 55825607 G A SMEK2 Missense_Mutation p.S289F 0.21 deleterious(0) benign(0.072) TCGA-CQ-5334-01 2 74763429 74763429 C T LOXL3 Missense_Mutation p.R361H 0.20 deleterious(0.03) possibly_damaging(0.535) TCGA-CQ-5334-01 2 89265992 89265992 G T IGKV1-6 Missense_Mutation p.A47E 0.21 deleterious(0.01) benign(0.331) TCGA-CQ-5334-01 2 98430838 98430838 C G TMEM131 Missense_Mutation p.D436H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CQ-5334-01 3 111732320 111732320 A C TAGLN3 Silent p.I174I 0.23 TCGA-CQ-5334-01 3 125786954 125786954 C T SLC41A3 Missense_Mutation p.D37N 0.21 tolerated(0.33) benign(0.276) TCGA-CQ-5334-01 3 150290245 150290245 G C EIF2A Missense_Mutation p.E438Q 0.21 tolerated(0.93) benign(0.001) TCGA-CQ-5334-01 3 15492859 15492859 C A COLQ 3'UTR 0.48 TCGA-CQ-5334-01 3 183433041 183433041 G A YEATS2 Missense_Mutation p.E31K 0.26 deleterious(0) benign(0.284) TCGA-CQ-5334-01 3 46937282 46937282 G A PTH1R Missense_Mutation p.R79K 0.29 tolerated(1) benign(0) TCGA-CQ-5334-01 3 47469138 47469138 C G SCAP Missense_Mutation p.E144Q 0.24 tolerated(0.11) benign(0.186) TCGA-CQ-5334-01 3 48680426 48680426 C T CELSR3 Missense_Mutation p.E2794K 0.23 deleterious(0.01) probably_damaging(0.913) TCGA-CQ-5334-01 3 50230738 50230738 G C GNAT1 Missense_Mutation p.E64Q 0.26 tolerated(1) probably_damaging(0.966) TCGA-CQ-5334-01 3 53839052 53839052 C G CACNA1D Missense_Mutation p.I1896M 0.28 tolerated_low_confidence(0.24) benign(0) TCGA-CQ-5334-01 3 70014097 70014097 G A MITF Missense_Mutation p.V421I 0.22 tolerated(0.44) benign(0.038) TCGA-CQ-5334-01 3 89390977 89390977 C T EPHA3 Missense_Mutation p.P348L 0.26 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 4 111397525 111397525 A G ENPEP 5'UTR 0.21 TCGA-CQ-5334-01 4 159789364 159789364 C T FNIP2 Missense_Mutation p.R526C 0.20 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 4 187532709 187532710 - G FAT1 Frame_Shift_Ins p.V3229Cfs*3 0.33 TCGA-CQ-5334-01 4 2831567 2831567 C T SH3BP2 Missense_Mutation p.H369Y 0.16 tolerated_low_confidence(0.08) benign(0.004) TCGA-CQ-5334-01 5 110097165 110097165 T C SLC25A46 Missense_Mutation p.F314L 0.19 tolerated(0.2) benign(0.194) TCGA-CQ-5334-01 5 132334527 132334527 G C ZCCHC10 Silent p.T87T 0.19 TCGA-CQ-5334-01 5 137500615 137500615 C T BRD8 Missense_Mutation p.E507K 0.17 deleterious(0.04) benign(0.333) TCGA-CQ-5334-01 5 140188125 140188125 C T PCDHA4 Silent p.N451N 0.23 TCGA-CQ-5334-01 5 156390225 156390225 G T TIMD4 5'UTR 0.12 TCGA-CQ-5334-01 5 160059205 160059205 G T ATP10B Silent p.G517G 0.14 TCGA-CQ-5334-01 5 176025708 176025708 C G GPRIN1 Missense_Mutation p.K376N 0.16 deleterious(0.01) possibly_damaging(0.772) TCGA-CQ-5334-01 5 33453512 33453512 C G TARS Missense_Mutation p.Q183E 0.23 deleterious(0.01) benign(0.039) TCGA-CQ-5334-01 5 6742612 6742612 A G PAPD7 Missense_Mutation p.I90V 0.45 tolerated(0.29) probably_damaging(0.959) TCGA-CQ-5334-01 6 10876748 10876748 G C GCM2 Missense_Mutation p.P129R 0.47 deleterious(0) probably_damaging(0.999) TCGA-CQ-5334-01 6 119245037 119245037 G C MCM9 Nonsense_Mutation p.S187* 0.19 TCGA-CQ-5334-01 6 124676415 124676415 T C NKAIN2 Silent p.Y65Y 0.17 TCGA-CQ-5334-01 6 146247400 146247400 C T SHPRH Silent p.L1078L 0.15 TCGA-CQ-5334-01 6 154727688 154727688 C T CNKSR3 Missense_Mutation p.E490K 0.17 tolerated(0.4) benign(0.169) TCGA-CQ-5334-01 6 27858539 27858539 G T HIST1H3J Missense_Mutation p.S11Y 0.12 deleterious_low_confidence(0) benign(0.033) TCGA-CQ-5334-01 6 32166457 32166457 G C NOTCH4 Nonsense_Mutation p.S1529* 0.17 TCGA-CQ-5334-01 6 33283438 33283442 AAGGG - ZBTB22 Frame_Shift_Del p.P418Gfs*50 0.38 TCGA-CQ-5334-01 6 33382536 33382536 T A PHF1 Missense_Mutation p.C327S 0.17 deleterious(0.02) benign(0.148) TCGA-CQ-5334-01 6 33403058 33403058 C G SYNGAP1 Missense_Mutation p.I213M 0.35 deleterious(0) possibly_damaging(0.851) TCGA-CQ-5334-01 6 36922444 36922444 G A PI16 5'UTR 0.23 TCGA-CQ-5334-01 6 42975737 42975737 G A PPP2R5D Missense_Mutation p.R264H 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 6 43109979 43109979 C T PTK7 Silent p.T671T 0.47 TCGA-CQ-5334-01 6 43173028 43173028 G A CUL9 Missense_Mutation p.D1554N 0.16 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 6 86387079 86387079 C T SNHG5 Intron 0.30 TCGA-CQ-5334-01 7 100849690 100849690 C T PLOD3 Missense_Mutation p.D697N 0.27 tolerated(1) benign(0.002) TCGA-CQ-5334-01 7 149493600 149493600 C T SSPO RNA 0.18 TCGA-CQ-5334-01 7 2296548 2296548 G A SNX8 Silent p.L415L 0.17 TCGA-CQ-5334-01 7 27183283 27183283 C A HOXA5 5'UTR 0.14 TCGA-CQ-5334-01 7 28844023 28844023 C G CREB5 Missense_Mutation p.Q304E 0.31 tolerated(0.4) unknown(0) TCGA-CQ-5334-01 7 31683179 31683179 G T CCDC129 Missense_Mutation p.G758V 0.17 tolerated(0.1) possibly_damaging(0.881) TCGA-CQ-5334-01 7 45005749 45005749 G A MYO1G Missense_Mutation p.R694C 0.17 deleterious(0) possibly_damaging(0.906) TCGA-CQ-5334-01 7 74114630 74114630 C T GTF2I Nonsense_Mutation p.R143* 0.12 TCGA-CQ-5334-01 8 103305964 103305964 G C UBR5 Silent p.V1486V 0.15 TCGA-CQ-5334-01 8 143562715 143562715 G C BAI1 Missense_Mutation p.Q643H 0.19 tolerated(0.35) benign(0.216) TCGA-CQ-5334-01 8 143866646 143866646 G A LY6D Silent p.P126P 0.17 TCGA-CQ-5334-01 8 145661383 145661383 C T TONSL Silent p.P811P 0.26 TCGA-CQ-5334-01 8 38122391 38122391 G T PPAPDC1B Intron 0.30 TCGA-CQ-5334-01 8 99053958 99053958 C T RPL30 3'UTR 0.22 TCGA-CQ-5334-01 9 107571747 107571747 G A ABCA1 Missense_Mutation p.P1425L 0.26 tolerated(0.22) benign(0.003) TCGA-CQ-5334-01 9 132687418 132687418 C T FNBP1 Missense_Mutation p.E270K 0.20 deleterious(0) benign(0.15) TCGA-CQ-5334-01 9 136522324 136522326 CAA - DBH In_Frame_Del p.N566del 0.21 TCGA-CQ-5334-01 9 139402562 139402562 C A NOTCH1 Nonsense_Mutation p.G1119* 0.25 TCGA-CQ-5334-01 9 38396723 38396723 C T ALDH1B1 Silent p.F326F 0.20 TCGA-CQ-5334-01 9 77343238 77343238 G A TRPM6 Missense_Mutation p.P1951L 0.24 deleterious(0) probably_damaging(1) TCGA-CQ-5334-01 X 133549100 133549100 G A PHF6 Missense_Mutation p.D262N 0.44 tolerated(1) benign(0.083) TCGA-CQ-5334-01 X 53439161 53439161 G C SMC1A Missense_Mutation p.I299M 0.48 deleterious(0) probably_damaging(0.998) TCGA-CQ-5334-01 X 53573400 53573400 T C HUWE1 Missense_Mutation p.I3638V 0.33 unknown(0) TCGA-CQ-5334-01 X 72797282 72797282 C G CHIC1 Silent p.S112S 0.29 TCGA-CQ-6218-01 10 101953836 101953836 C A CHUK Missense_Mutation p.V627L 0.19 tolerated(0.29) benign(0.004) TCGA-CQ-6218-01 10 116251550 116251550 C T ABLIM1 Missense_Mutation p.G328S 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-CQ-6218-01 10 118969311 118969311 C G KCNK18 Nonsense_Mutation p.S219* 0.22 TCGA-CQ-6218-01 10 119043299 119043299 G A PDZD8 Missense_Mutation p.T982M 0.23 deleterious(0) probably_damaging(0.964) TCGA-CQ-6218-01 10 32329357 32329357 T C KIF5B Missense_Mutation p.I81M 0.22 deleterious(0) probably_damaging(0.999) TCGA-CQ-6218-01 10 79737376 79737376 C A POLR3A Nonsense_Mutation p.E1345* 0.23 TCGA-CQ-6218-01 10 87898641 87898641 G A GRID1 Missense_Mutation p.R221W 0.23 deleterious(0) probably_damaging(0.998) TCGA-CQ-6218-01 10 88768495 88768495 G A RP11-96C23.10 3'Flank 0.21 TCGA-CQ-6218-01 11 107197637 107197637 C T CWF19L2 Silent p.%3D 0.20 TCGA-CQ-6218-01 11 44640601 44640601 C A CD82 Silent p.L243L 0.22 TCGA-CQ-6218-01 11 5444060 5444060 C T OR51Q1 Silent p.I210I 0.24 TCGA-CQ-6218-01 11 61133693 61133693 G C TMEM138 Intron 0.23 TCGA-CQ-6218-01 11 613301 613301 C T IRF7 Missense_Mutation p.G394D 0.20 deleterious(0) probably_damaging(0.999) TCGA-CQ-6218-01 11 64679357 64679357 G A ATG2A Silent p.S395S 0.17 TCGA-CQ-6218-01 11 65397860 65397860 G A PCNXL3 Missense_Mutation p.E1419K 0.27 deleterious(0) probably_damaging(0.987) TCGA-CQ-6218-01 11 6588430 6588430 T G DNHD1 Missense_Mutation p.I3897M 0.26 benign(0.028) TCGA-CQ-6218-01 11 67925548 67925548 G A SUV420H1 Silent p.N755N 0.27 TCGA-CQ-6218-01 11 9321190 9321190 A G TMEM41B Silent p.I60I 0.20 TCGA-CQ-6218-01 12 131476850 131476850 C T GPR133 Silent p.P293P 0.25 TCGA-CQ-6218-01 12 132323155 132323155 A G MMP17 Splice_Site p.X98_splice 0.22 TCGA-CQ-6218-01 12 13715886 13715886 G A GRIN2B Missense_Mutation p.P1429L 0.20 tolerated(0.54) benign(0.102) TCGA-CQ-6218-01 12 44148421 44148421 C G PUS7L Missense_Mutation p.V210L 0.14 tolerated(0.09) possibly_damaging(0.463) TCGA-CQ-6218-01 12 52965209 52965209 C A KRT74 Silent p.V259V 0.23 TCGA-CQ-6218-01 12 72955951 72955951 T G TRHDE Missense_Mutation p.L554V 0.21 deleterious(0) possibly_damaging(0.802) TCGA-CQ-6218-01 12 95867897 95867897 T G METAP2 5'UTR 0.65 TCGA-CQ-6218-01 13 25744231 25744231 C T AMER2 Silent p.P509P 0.20 TCGA-CQ-6218-01 13 26104781 26104781 G A ATP8A2 Missense_Mutation p.E135K 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CQ-6218-01 14 101533123 101533123 T C MIR656 RNA 0.24 TCGA-CQ-6218-01 14 21881157 21881157 T C CHD8 Splice_Site p.X715_splice 0.21 TCGA-CQ-6218-01 14 60616104 60616104 C T DHRS7 Silent p.G313G 0.20 TCGA-CQ-6218-01 14 64518705 64518705 A G SYNE2 Missense_Mutation p.R2692G 0.14 probably_damaging(0.999) TCGA-CQ-6218-01 14 96756776 96756776 T C ATG2B Missense_Mutation p.I1951M 0.26 deleterious(0) benign(0.123) TCGA-CQ-6218-01 15 25325330 25325330 G A SNORD116-14 RNA 0.15 TCGA-CQ-6218-01 15 69238803 69238803 C G SPESP1 Silent p.L310L 0.26 TCGA-CQ-6218-01 15 84651117 84651117 C T ADAMTSL3 Missense_Mutation p.R913C 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-6218-01 15 88799155 88799155 G C NTRK3 Nonsense_Mutation p.S77* 0.24 TCGA-CQ-6218-01 16 20371931 20371931 G A PDILT Silent p.L489L 0.19 TCGA-CQ-6218-01 16 24801451 24801451 A T TNRC6A Silent p.P496P 0.13 TCGA-CQ-6218-01 16 2821463 2821463 C A TCEB2 3'UTR 0.25 TCGA-CQ-6218-01 16 28912067 28912067 G A ATP2A1 Missense_Mutation p.E644K 0.19 tolerated(0.11) benign(0.316) TCGA-CQ-6218-01 16 33647430 33647430 C A RP11-812E19.9 Missense_Mutation p.R57L 0.20 deleterious_low_confidence(0.01) benign(0.129) TCGA-CQ-6218-01 17 10248895 10248895 G A MYH13 Silent p.Y434Y 0.21 TCGA-CQ-6218-01 17 15492187 15492187 T A CDRT1 3'UTR 0.20 TCGA-CQ-6218-01 17 27889938 27889938 C A ABHD15 Missense_Mutation p.V350L 0.16 deleterious(0.01) probably_damaging(0.961) TCGA-CQ-6218-01 17 32953441 32953441 G A TMEM132E Silent p.T121T 0.19 TCGA-CQ-6218-01 17 40849289 40849289 C G CNTNAP1 Intron 0.25 TCGA-CQ-6218-01 17 5993711 5993711 G A WSCD1 Missense_Mutation p.V205M 0.20 deleterious(0.04) benign(0.04) TCGA-CQ-6218-01 17 62533807 62533807 T C CEP95 Silent p.D792D 0.18 TCGA-CQ-6218-01 17 74001438 74001438 G A CDK3 Silent p.P284P 0.18 TCGA-CQ-6218-01 17 7578196 7578196 A C TP53 Missense_Mutation p.V218G 0.24 deleterious(0) probably_damaging(1) TCGA-CQ-6218-01 17 7578267 7578267 A - TP53 Frame_Shift_Del p.I195Sfs*52 0.17 TCGA-CQ-6218-01 18 14530502 14530502 G C POTEC Missense_Mutation p.S369C 0.06 tolerated(0.11) possibly_damaging(0.894) TCGA-CQ-6218-01 18 18622625 18622625 T C ROCK1 Missense_Mutation p.I241V 0.26 deleterious(0) possibly_damaging(0.777) TCGA-CQ-6218-01 18 19429197 19429197 G C MIB1 Missense_Mutation p.D812H 0.19 tolerated(0.42) benign(0.078) TCGA-CQ-6218-01 19 17270248 17270248 C T MYO9B Missense_Mutation p.T458M 0.29 deleterious(0.03) probably_damaging(0.982) TCGA-CQ-6218-01 19 33130167 33130167 T G ANKRD27 Intron 0.21 TCGA-CQ-6218-01 19 41223543 41223543 G T ITPKC Missense_Mutation p.G168V 0.31 deleterious_low_confidence(0) benign(0.005) TCGA-CQ-6218-01 19 4164536 4164536 C T CREB3L3 Missense_Mutation p.P205S 0.16 tolerated(0.06) benign(0.016) TCGA-CQ-6218-01 19 42989362 42989362 C A LIPE-AS1 RNA 0.22 TCGA-CQ-6218-01 19 49013282 49013282 G A LMTK3 Missense_Mutation p.S149L 0.24 benign(0.381) TCGA-CQ-6218-01 19 52537191 52537191 C A ZNF432 Nonsense_Mutation p.E581* 0.31 TCGA-CQ-6218-01 19 55281317 55281317 C T KIR2DL1 Silent p.V5V 0.45 TCGA-CQ-6218-01 19 57326231 57326231 C A PEG3 Missense_Mutation p.M1193I 0.18 tolerated(0.39) benign(0.001) TCGA-CQ-6218-01 19 57640945 57640945 A C USP29 Missense_Mutation p.Q301P 0.11 deleterious(0) probably_damaging(0.998) TCGA-CQ-6218-01 19 58565265 58565265 G A ZSCAN1 Missense_Mutation p.R358Q 0.21 tolerated(0.51) benign(0.129) TCGA-CQ-6218-01 19 6422368 6422368 C T KHSRP Missense_Mutation p.R110K 0.15 deleterious(0.01) probably_damaging(0.952) TCGA-CQ-6218-01 1 111660792 111660792 C T DRAM2 Missense_Mutation p.R264K 0.15 tolerated_low_confidence(0.5) benign(0.002) TCGA-CQ-6218-01 1 12854235 12854235 C T PRAMEF1 Silent p.I153I 0.19 TCGA-CQ-6218-01 1 160253344 160253344 C T PEX19 Silent p.K52K 0.29 TCGA-CQ-6218-01 1 161954872 161954872 G C OLFML2B Intron 0.21 TCGA-CQ-6218-01 1 162536139 162536139 G T UAP1 Splice_Site p.X94_splice 0.27 TCGA-CQ-6218-01 1 165712477 165712477 T C TMCO1 Missense_Mutation p.N183S 0.23 tolerated(0.2) possibly_damaging(0.7) TCGA-CQ-6218-01 1 16907926 16907926 T A NBPF1 Silent p.S456S 0.04 TCGA-CQ-6218-01 1 172011156 172011156 C T DNM3 Nonsense_Mutation p.Q334* 0.22 TCGA-CQ-6218-01 1 197030149 197030149 A T F13B Missense_Mutation p.F170I 0.17 deleterious(0.03) probably_damaging(0.93) TCGA-CQ-6218-01 1 203097989 203097989 C T ADORA1 Missense_Mutation p.A7V 0.18 tolerated(0.07) benign(0.231) TCGA-CQ-6218-01 1 223984132 223984132 G C TP53BP2 Silent p.L703L 0.27 TCGA-CQ-6218-01 1 226074299 226074300 - T LEFTY1 3'UTR 0.32 TCGA-CQ-6218-01 1 26349593 26349593 A G EXTL1 Silent p.Q152Q 0.19 TCGA-CQ-6218-01 1 70144160 70144160 G C LRRC7 Missense_Mutation p.E33D 0.28 tolerated_low_confidence(0.06) benign(0.007) TCGA-CQ-6218-01 1 75038225 75038225 C A C1orf173 Missense_Mutation p.A1057S 0.28 tolerated(0.08) possibly_damaging(0.592) TCGA-CQ-6218-01 1 94526180 94526180 G A ABCA4 Silent p.V691V 0.27 TCGA-CQ-6218-01 20 2819570 2819570 A C PCED1A Silent p.L121L 0.05 TCGA-CQ-6218-01 20 44422617 44422617 C T DNTTIP1 Silent p.I78I 0.24 TCGA-CQ-6218-01 20 50007976 50007976 A G NFATC2 Missense_Mutation p.I912T 0.28 deleterious(0.02) benign(0.06) TCGA-CQ-6218-01 20 5990553 5990553 G C CRLS1 Missense_Mutation p.D147H 0.09 deleterious(0) probably_damaging(0.999) TCGA-CQ-6218-01 20 62178520 62178520 G A SRMS Silent p.A99A 0.33 TCGA-CQ-6218-01 21 31311810 31311810 G A GRIK1 Silent p.H3H 0.29 TCGA-CQ-6218-01 21 47404294 47404294 C G COL6A1 Silent p.L113L 0.26 TCGA-CQ-6218-01 22 21828938 21828938 C T TMEM191C 3'Flank 0.27 TCGA-CQ-6218-01 22 25601219 25601219 G A CRYBB3 Silent p.E120E 0.21 TCGA-CQ-6218-01 22 38508233 38508233 C T PLA2G6 Missense_Mutation p.E786K 0.20 tolerated(0.68) benign(0.402) TCGA-CQ-6218-01 22 50716549 50716549 G A PLXNB2 Silent p.V1628V 0.19 TCGA-CQ-6218-01 22 51010715 51010715 G C CPT1B Missense_Mutation p.L459V 0.17 tolerated(0.16) benign(0.032) TCGA-CQ-6218-01 2 148653878 148653878 C G ACVR2A Missense_Mutation p.L22V 0.12 tolerated(0.51) benign(0.16) TCGA-CQ-6218-01 2 160243034 160243034 G A BAZ2B Nonsense_Mutation p.R1101* 0.22 TCGA-CQ-6218-01 2 40366549 40366549 G C SLC8A1 Nonsense_Mutation p.S846* 0.33 TCGA-CQ-6218-01 2 99154409 99154409 C T INPP4A Missense_Mutation p.T184I 0.18 tolerated(0.35) benign(0.06) TCGA-CQ-6218-01 3 112718380 112718380 C G GTPBP8 Missense_Mutation p.Q252E 0.16 tolerated(0.09) benign(0.297) TCGA-CQ-6218-01 3 120130792 120130792 A C FSTL1 Missense_Mutation p.N69K 0.22 deleterious(0) probably_damaging(0.997) TCGA-CQ-6218-01 3 142185265 142185265 C G ATR Missense_Mutation p.M2266I 0.15 deleterious(0.03) benign(0.184) TCGA-CQ-6218-01 3 176765338 176765338 C G TBL1XR1 Splice_Site p.X235_splice 0.20 TCGA-CQ-6218-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.20 deleterious(0.04) probably_damaging(0.96) TCGA-CQ-6218-01 3 184294876 184294876 G A EPHB3 Missense_Mutation p.R420H 0.31 tolerated(0.15) benign(0.009) TCGA-CQ-6218-01 3 46008282 46008282 G A FYCO1 Silent p.C848C 0.30 TCGA-CQ-6218-01 3 48697921 48697921 C T CELSR3 Missense_Mutation p.R716H 0.28 deleterious(0.04) probably_damaging(1) TCGA-CQ-6218-01 3 97983471 97983471 G C OR5H6 Missense_Mutation p.V115L 0.16 tolerated(0.18) benign(0.005) TCGA-CQ-6218-01 4 13370179 13370179 C T RAB28 3'UTR 0.16 TCGA-CQ-6218-01 4 159753081 159753081 C T FNIP2 Silent p.Y150Y 0.25 TCGA-CQ-6218-01 4 187522449 187522449 G A FAT1 Nonsense_Mutation p.R3872* 0.29 TCGA-CQ-6218-01 4 187540720 187540742 GCCAGTGCTGCTGTCTACATGAA - FAT1 Frame_Shift_Del p.F2333Sfs*24 0.11 TCGA-CQ-6218-01 4 74350097 74350097 C T AFM Missense_Mutation p.S87L 0.26 tolerated(0.32) possibly_damaging(0.608) TCGA-CQ-6218-01 5 113831673 113831673 A G KCNN2 Missense_Mutation p.T512A 0.15 tolerated(0.23) probably_damaging(0.931) TCGA-CQ-6218-01 5 140501700 140501700 C T PCDHB4 Silent p.S40S 0.16 TCGA-CQ-6218-01 5 140515758 140515758 G C PCDHB5 Missense_Mutation p.E248Q 0.18 tolerated_low_confidence(0.13) benign(0.019) TCGA-CQ-6218-01 5 140741612 140741612 C T PCDHGB2 Missense_Mutation p.A637V 0.28 deleterious(0.04) benign(0.127) TCGA-CQ-6218-01 5 148386619 148386619 A G SH3TC2 Missense_Mutation p.V1167A 0.17 tolerated(0.07) possibly_damaging(0.759) TCGA-CQ-6218-01 5 149677008 149677008 G A ARSI Silent p.A493A 0.21 TCGA-CQ-6218-01 5 37303483 37303483 G A NUP155 Nonsense_Mutation p.R1066* 0.25 TCGA-CQ-6218-01 5 40936557 40936557 C A C7 Missense_Mutation p.P133H 0.39 deleterious(0.01) possibly_damaging(0.77) TCGA-CQ-6218-01 5 68581236 68581236 A G CCDC125 Silent p.P386P 0.24 TCGA-CQ-6218-01 5 94994576 94994576 G C SPATA9 Missense_Mutation p.I172M 0.17 deleterious(0) possibly_damaging(0.837) TCGA-CQ-6218-01 6 117246698 117246698 C T RFX6 Silent p.D587D 0.23 TCGA-CQ-6218-01 6 123319045 123319045 G C CLVS2 Missense_Mutation p.R41S 0.25 tolerated(0.15) possibly_damaging(0.74) TCGA-CQ-6218-01 6 131540807 131540807 A - AKAP7 Frame_Shift_Del p.I239* 0.19 TCGA-CQ-6218-01 6 165706919 165706919 G A C6orf118 Missense_Mutation p.S368F 0.26 deleterious(0) possibly_damaging(0.795) TCGA-CQ-6218-01 6 170591901 170591901 T C DLL1 3'UTR 0.26 TCGA-CQ-6218-01 6 26216707 26216707 G C HIST1H2BG Missense_Mutation p.I55M 0.15 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-CQ-6218-01 6 29142034 29142034 G T OR2J2 Missense_Mutation p.V208F 0.27 deleterious(0) possibly_damaging(0.747) TCGA-CQ-6218-01 6 32826344 32826344 A T PSMB9 Intron 0.27 TCGA-CQ-6218-01 6 39158824 39158824 T C KCNK5 Missense_Mutation p.S448G 0.25 tolerated_low_confidence(0.38) benign(0) TCGA-CQ-6218-01 6 63989944 63989944 G A LGSN Silent p.F504F 0.14 TCGA-CQ-6218-01 6 76591501 76591501 G A MYO6 Silent p.K794K 0.23 TCGA-CQ-6218-01 6 90392899 90392899 C T MDN1 Silent p.L4018L 0.28 TCGA-CQ-6218-01 7 21882167 21882167 T A DNAH11 Missense_Mutation p.I3573N 0.16 probably_damaging(0.996) TCGA-CQ-6218-01 7 23339007 23339007 C T MALSU1 Silent p.A12A 0.20 TCGA-CQ-6218-01 7 35130052 35130052 C T DPY19L2P1 RNA 0.26 TCGA-CQ-6218-01 7 35244106 35244106 C T TBX20 Missense_Mutation p.E327K 0.20 tolerated(0.25) benign(0.016) TCGA-CQ-6218-01 7 48284272 48284272 G A ABCA13 Silent p.A454A 0.24 TCGA-CQ-6218-01 7 83764187 83764187 C T SEMA3A Missense_Mutation p.E65K 0.29 tolerated(0.15) probably_damaging(0.996) TCGA-CQ-6218-01 8 113564847 113564847 T A CSMD3 Missense_Mutation p.E1446V 0.29 deleterious(0.01) possibly_damaging(0.604) TCGA-CQ-6218-01 8 125094566 125094566 C T FER1L6 Silent p.L1420L 0.21 TCGA-CQ-6218-01 8 133622423 133622423 A T LRRC6 Missense_Mutation p.C377S 0.12 tolerated(0.57) benign(0.002) TCGA-CQ-6218-01 8 17918918 17918918 G C ASAH1 Missense_Mutation p.F267L 0.21 deleterious(0.05) possibly_damaging(0.86) TCGA-CQ-6218-01 8 23306270 23306270 T C ENTPD4 Missense_Mutation p.D64G 0.23 tolerated(0.06) benign(0.206) TCGA-CQ-6218-01 8 25267635 25267635 G A DOCK5 Missense_Mutation p.D1809N 0.36 tolerated(0.39) benign(0.033) TCGA-CQ-6218-01 8 68028171 68028171 G T CSPP1 Missense_Mutation p.S432I 0.14 deleterious(0) probably_damaging(0.937) TCGA-CQ-6218-01 8 70585257 70585257 G A SLCO5A1 Silent p.F798F 0.18 TCGA-CQ-6218-01 8 93026818 93026818 G A RUNX1T1 Silent p.L164L 0.35 TCGA-CQ-6218-01 9 121929788 121929788 A T BRINP1 Silent p.R620R 0.23 TCGA-CQ-6218-01 9 138439759 138439759 C T OBP2A Missense_Mutation p.T107M 0.26 deleterious(0) possibly_damaging(0.533) TCGA-CQ-6218-01 9 140437130 140437130 C T PNPLA7 Silent p.V210V 0.29 TCGA-CQ-6218-01 9 73457992 73457992 C G TRPM3 Missense_Mutation p.R243P 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-CQ-6218-01 9 77377455 77377455 C T TRPM6 Missense_Mutation p.D1378N 0.22 tolerated_low_confidence(0.51) benign(0.001) TCGA-CQ-6218-01 9 82187643 82187643 C A TLE4 5'UTR 0.28 TCGA-CQ-6218-01 9 97522832 97522832 C T C9orf3 Missense_Mutation p.S256L 0.20 deleterious(0) probably_damaging(1) TCGA-CQ-6218-01 X 118586008 118586008 G C SLC25A43 Missense_Mutation p.D243H 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-CQ-6218-01 X 138612944 138612944 C G F9 Missense_Mutation p.I7M 0.08 tolerated_low_confidence(0.14) benign(0.188) TCGA-CQ-6218-01 X 148037550 148037550 G C AFF2 Missense_Mutation p.E659Q 0.19 tolerated(0.1) benign(0.305) TCGA-CQ-6218-01 X 148797305 148797305 G T MAGEA11 Missense_Mutation p.R78S 0.19 tolerated(0.18) benign(0.253) TCGA-CQ-6218-01 X 152159807 152159807 A G PNMA5 Silent p.D112D 0.16 TCGA-CQ-6218-01 X 153706741 153706741 G A LAGE3 Silent p.S66S 0.17 TCGA-CQ-6218-01 X 23019111 23019111 G T DDX53 Nonsense_Mutation p.E313* 0.34 TCGA-CQ-6218-01 X 35989886 35989886 A C CXorf22 Missense_Mutation p.R718S 0.41 tolerated(0.1) possibly_damaging(0.57) TCGA-CQ-6218-01 X 53455530 53455530 C T RIBC1 Nonsense_Mutation p.Q167* 0.65 TCGA-CQ-6218-01 X 70787355 70787355 G A OGT Silent p.L865L 0.31 TCGA-CQ-6218-01 X 72433920 72433920 C T NAP1L2 Missense_Mutation p.E137K 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-CQ-6218-01 X 73960449 73960449 C A KIAA2022 Nonsense_Mutation p.E1315* 0.26 TCGA-CQ-6218-01 X 79281179 79281179 A T TBX22 Missense_Mutation p.H179L 0.24 deleterious(0.01) probably_damaging(1) TCGA-CQ-6218-01 X 79946660 79946660 G C BRWD3 Missense_Mutation p.P1165R 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-CQ-6219-01 10 82264528 82264528 C T TSPAN14 Silent p.S42S 0.16 TCGA-CQ-6219-01 11 117056884 117056884 A G SIDT2 Missense_Mutation p.I303V 0.16 tolerated(0.52) benign(0.058) TCGA-CQ-6219-01 11 12313774 12313774 C T MICALCL Missense_Mutation p.S20L 0.17 tolerated_low_confidence(0.27) unknown(0) TCGA-CQ-6219-01 11 18252952 18252952 C G SAA4 3'UTR 0.07 TCGA-CQ-6219-01 11 34182611 34182611 G A ABTB2 Missense_Mutation p.H746Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-CQ-6219-01 11 61067533 61067533 G A DDB1 3'UTR 0.19 TCGA-CQ-6219-01 12 14923813 14923813 T C HIST4H4 Missense_Mutation p.D69G 0.12 deleterious(0.01) possibly_damaging(0.846) TCGA-CQ-6219-01 13 46070356 46070356 A T COG3 Missense_Mutation p.Y466F 0.16 tolerated(0.58) possibly_damaging(0.669) TCGA-CQ-6219-01 14 21795832 21795832 G A RPGRIP1 Missense_Mutation p.V921M 0.18 tolerated(0.13) benign(0.063) TCGA-CQ-6219-01 14 50798919 50798919 C G CDKL1 Intron 0.05 TCGA-CQ-6219-01 14 89124674 89124674 C T EML5 Missense_Mutation p.R1245H 0.04 deleterious(0) probably_damaging(0.992) TCGA-CQ-6219-01 16 31373519 31373520 - A ITGAX Nonsense_Mutation p.Y404* 0.12 TCGA-CQ-6219-01 16 3293648 3293648 G C MEFV Missense_Mutation p.F613L 0.12 tolerated(0.62) benign(0.11) TCGA-CQ-6219-01 16 3640079 3640079 C A SLX4 Missense_Mutation p.R1187M 0.11 deleterious(0.03) possibly_damaging(0.784) TCGA-CQ-6219-01 16 3724418 3724418 G A TRAP1 Silent p.H322H 0.07 TCGA-CQ-6219-01 16 74372683 74372683 C T RP11-252A24.2 RNA 0.18 TCGA-CQ-6219-01 16 88871192 88871192 C T CDT1 Missense_Mutation p.S125L 0.10 tolerated(0.14) benign(0.006) TCGA-CQ-6219-01 17 1782859 1782859 A G RPA1 Missense_Mutation p.I320V 0.36 tolerated(0.12) benign(0.331) TCGA-CQ-6219-01 17 18397602 18397602 A G LGALS9C Missense_Mutation p.Y331C 0.18 tolerated(0.18) benign(0.007) TCGA-CQ-6219-01 17 31099821 31099821 G T MYO1D Missense_Mutation p.H202N 0.10 deleterious(0) probably_damaging(0.999) TCGA-CQ-6219-01 17 35545260 35545260 T C ACACA Missense_Mutation p.D1578G 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-6219-01 17 37571363 37571363 G C MED1 Nonsense_Mutation p.S472* 0.07 TCGA-CQ-6219-01 17 46622170 46622170 G A HOXB2 Missense_Mutation p.S35L 0.12 deleterious(0) probably_damaging(0.954) TCGA-CQ-6219-01 17 65889610 65889610 A G BPTF Missense_Mutation p.N727S 0.08 probably_damaging(0.997) TCGA-CQ-6219-01 17 68172279 68172279 A G KCNJ2 Missense_Mutation p.I367V 0.13 tolerated(0.31) benign(0.18) TCGA-CQ-6219-01 17 74161588 74161588 C G RNF157 Missense_Mutation p.E223Q 0.07 deleterious(0) probably_damaging(0.961) TCGA-CQ-6219-01 17 7578211 7578211 C G TP53 Missense_Mutation p.R213P 0.28 deleterious(0) probably_damaging(1) TCGA-CQ-6219-01 18 3879519 3879519 T G DLGAP1 Missense_Mutation p.S184R 0.09 deleterious(0.01) possibly_damaging(0.776) TCGA-CQ-6219-01 18 56400691 56400691 G A MALT1 Missense_Mutation p.D429N 0.07 deleterious(0.03) possibly_damaging(0.494) TCGA-CQ-6219-01 18 9257921 9257921 A T ANKRD12 Silent p.G1552G 0.22 TCGA-CQ-6219-01 19 13873753 13873753 G C CCDC130 Silent p.G354G 0.20 TCGA-CQ-6219-01 19 13879659 13879659 G A MRI1 Missense_Mutation p.R249H 0.14 deleterious(0) possibly_damaging(0.741) TCGA-CQ-6219-01 19 21239599 21239599 A T ZNF430 Missense_Mutation p.Y162F 0.11 deleterious(0.04) benign(0.018) TCGA-CQ-6219-01 19 49631641 49631641 G A PPFIA3 Silent p.T86T 0.09 TCGA-CQ-6219-01 19 7184590 7184590 G A INSR Silent p.S237S 0.08 TCGA-CQ-6219-01 1 12884747 12884747 T A PRAMEF11 3'UTR 0.12 TCGA-CQ-6219-01 1 160276272 160276272 C T COPA Silent p.K438K 0.10 TCGA-CQ-6219-01 1 161017681 161017681 G A ARHGAP30 Missense_Mutation p.P1044S 0.16 tolerated_low_confidence(0.53) benign(0.001) TCGA-CQ-6219-01 1 40036937 40036937 T C PABPC4 Missense_Mutation p.M158V 0.10 tolerated(0.68) probably_damaging(0.999) TCGA-CQ-6219-01 1 40366859 40366859 C A MYCL Missense_Mutation p.G113V 0.13 tolerated(0.29) benign(0.311) TCGA-CQ-6219-01 1 90493266 90493266 A T ZNF326 3'UTR 0.08 TCGA-CQ-6219-01 20 30723921 30723921 C G TM9SF4 Nonsense_Mutation p.Y58* 0.15 TCGA-CQ-6219-01 20 33451191 33451191 G A GGT7 Silent p.I110I 0.10 TCGA-CQ-6219-01 20 35695243 35695243 C G RBL1 Missense_Mutation p.E244Q 0.04 tolerated(0.17) benign(0.04) TCGA-CQ-6219-01 20 9520158 9520158 C A PAK7 Missense_Mutation p.G704V 0.11 deleterious(0) probably_damaging(1) TCGA-CQ-6219-01 21 45744411 45744411 A G PFKL Missense_Mutation p.K563R 0.18 tolerated(0.39) possibly_damaging(0.668) TCGA-CQ-6219-01 21 47836599 47836599 C T PCNT Missense_Mutation p.A2256V 0.08 possibly_damaging(0.739) TCGA-CQ-6219-01 22 21354371 21354371 C T THAP7 Missense_Mutation p.R243Q 0.10 deleterious(0) probably_damaging(0.921) TCGA-CQ-6219-01 2 152319685 152319685 G A RIF1 Silent p.R1217R 0.14 TCGA-CQ-6219-01 2 15374713 15374713 C T NBAS Silent p.K2034K 0.06 TCGA-CQ-6219-01 2 18736913 18736913 G A RDH14 Silent p.S185S 0.08 TCGA-CQ-6219-01 2 187529348 187529348 G A ITGAV Missense_Mutation p.G685R 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-CQ-6219-01 2 198380791 198380791 G C MOB4 5'UTR 0.20 TCGA-CQ-6219-01 2 198948736 198948736 G T PLCL1 Missense_Mutation p.E165D 0.25 deleterious(0) probably_damaging(0.999) TCGA-CQ-6219-01 2 223066811 223066811 C T PAX3 Silent p.T424T 0.13 TCGA-CQ-6219-01 2 230650483 230650483 T A TRIP12 Missense_Mutation p.Y1620F 0.07 tolerated(0.06) probably_damaging(0.97) TCGA-CQ-6219-01 3 111710339 111710340 - A ABHD10 Frame_Shift_Ins p.H232Tfs*2 0.14 TCGA-CQ-6219-01 3 121206259 121206259 A T POLQ Missense_Mutation p.F1840Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-CQ-6219-01 3 154027540 154027540 G A DHX36 Nonsense_Mutation p.Q239* 0.15 TCGA-CQ-6219-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-CQ-6219-01 3 184025484 184025484 G A PSMD2 Silent p.V762V 0.13 TCGA-CQ-6219-01 4 100197768 100197768 C T ADH1A 3'UTR 0.24 TCGA-CQ-6219-01 4 104082361 104082361 T A CENPE Missense_Mutation p.L671F 0.10 benign(0.303) TCGA-CQ-6219-01 4 25005706 25005706 G A LGI2 Silent p.D335D 0.14 TCGA-CQ-6219-01 4 85701359 85701359 C A WDFY3 Missense_Mutation p.D1423Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-CQ-6219-01 5 102296933 102296933 G C PAM Missense_Mutation p.G388R 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-CQ-6219-01 5 145651234 145651234 C T RBM27 Silent p.F995F 0.13 TCGA-CQ-6219-01 5 52398014 52398014 T C MOCS2 Missense_Mutation p.I47V 0.12 tolerated(0.49) benign(0.059) TCGA-CQ-6219-01 5 86658371 86658371 C G RASA1 Missense_Mutation p.Q446E 0.09 tolerated(0.22) benign(0.019) TCGA-CQ-6219-01 6 16327894 16327894 C A ATXN1 Missense_Mutation p.Q216H 0.35 tolerated_low_confidence(0.18) benign(0.02) TCGA-CQ-6219-01 6 30688263 30688264 - A TUBB 5'UTR 0.17 TCGA-CQ-6219-01 6 33237326 33237326 C G VPS52 Missense_Mutation p.E105Q 0.06 tolerated(0.28) benign(0.401) TCGA-CQ-6219-01 6 43220516 43220516 G A TTBK1 Missense_Mutation p.E50K 0.08 probably_damaging(0.995) TCGA-CQ-6219-01 6 44217204 44217204 C T HSP90AB1 Nonsense_Mutation p.Q80* 0.13 TCGA-CQ-6219-01 6 44221083 44221083 A T HSP90AB1 Missense_Mutation p.N678I 0.10 deleterious(0.03) benign(0.299) TCGA-CQ-6219-01 6 66044987 66044987 C T EYS Missense_Mutation p.R551Q 0.16 tolerated(0.31) benign(0) TCGA-CQ-6219-01 6 76022996 76022996 G A FILIP1 Missense_Mutation p.S851F 0.04 deleterious(0.03) possibly_damaging(0.73) TCGA-CQ-6219-01 7 11676026 11676026 G C THSD7A Silent p.L251L 0.22 TCGA-CQ-6219-01 7 140710224 140710224 G C MRPS33 Silent p.L70L 0.13 TCGA-CQ-6219-01 7 21721264 21721264 G A DNAH11 Missense_Mutation p.R1815K 0.08 probably_damaging(0.944) TCGA-CQ-6219-01 8 133823320 133823320 G C PHF20L1 Missense_Mutation p.D293H 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-CQ-6219-01 8 48815268 48815268 T C PRKDC Missense_Mutation p.I1044V 0.05 benign(0.005) TCGA-CQ-6219-01 9 101748163 101748163 G A COL15A1 Silent p.T139T 0.23 TCGA-CQ-6219-01 9 106896745 106896745 A G SMC2 Missense_Mutation p.N1053S 0.08 tolerated(0.54) benign(0.004) TCGA-CQ-6219-01 9 124522377 124522377 C T DAB2IP Missense_Mutation p.R249W 0.13 deleterious(0) probably_damaging(0.929) TCGA-CQ-6219-01 9 139413084 139413084 C T NOTCH1 Missense_Mutation p.R353H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CQ-6219-01 9 33932597 33932597 G C UBAP2 Missense_Mutation p.S713C 0.11 deleterious(0) unknown(0) TCGA-CQ-6219-01 9 96214605 96214605 C G FAM120AOS Missense_Mutation p.Q129H 0.11 deleterious_low_confidence(0) unknown(0) TCGA-CQ-6219-01 X 153172115 153172115 G C AVPR2 Missense_Mutation p.S350T 0.05 tolerated(0.2) benign(0.248) TCGA-CQ-6219-01 X 153218117 153218117 G A HCFC1 Missense_Mutation p.A1597V 0.06 tolerated_low_confidence(0.11) probably_damaging(0.956) TCGA-CQ-6219-01 X 31792157 31792157 G A DMD Silent p.L2488L 0.11 TCGA-CQ-6219-01 X 54324751 54324751 C G WNK3 Missense_Mutation p.D419H 0.11 deleterious(0.03) possibly_damaging(0.897) TCGA-CQ-6220-01 10 106960922 106960922 T A SORCS3 Silent p.R724R 0.12 TCGA-CQ-6220-01 10 116045996 116045996 T C VWA2 Silent p.R432R 0.12 TCGA-CQ-6220-01 10 71974336 71974336 C A PPA1 Nonsense_Mutation p.E102* 0.18 TCGA-CQ-6220-01 10 81373513 81373513 A G SFTPA1 Missense_Mutation p.I146V 0.12 tolerated(0.07) benign(0.009) TCGA-CQ-6220-01 10 90707026 90707026 C T ACTA2 Missense_Mutation p.D83N 0.16 tolerated_low_confidence(0.07) possibly_damaging(0.624) TCGA-CQ-6220-01 10 95415576 95415576 C T PDE6C Silent p.F665F 0.31 TCGA-CQ-6220-01 10 96443472 96443472 G A CYP2C18 5'UTR 0.19 TCGA-CQ-6220-01 10 99130758 99130758 G C RRP12 Silent p.L808L 0.21 TCGA-CQ-6220-01 11 120082137 120082137 G A OAF Silent p.A50A 0.19 TCGA-CQ-6220-01 11 124500696 124500696 C G TBRG1 Missense_Mutation p.H298D 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-CQ-6220-01 11 128839602 128839602 C T ARHGAP32 Missense_Mutation p.E1822K 0.18 deleterious(0) benign(0.269) TCGA-CQ-6220-01 11 5475596 5475596 G C OR51I2 Missense_Mutation p.S293T 0.05 tolerated(0.1) possibly_damaging(0.676) TCGA-CQ-6220-01 11 59376031 59376031 C G OSBP Missense_Mutation p.E250Q 0.29 tolerated(0.07) benign(0.017) TCGA-CQ-6220-01 11 62286423 62286423 C G AHNAK Missense_Mutation p.E5156Q 0.13 probably_damaging(0.986) TCGA-CQ-6220-01 11 6261383 6261383 C T CNGA4 Missense_Mutation p.A120V 0.28 tolerated(0.35) benign(0.009) TCGA-CQ-6220-01 11 69933944 69933944 C T ANO1 Silent p.I65I 0.18 TCGA-CQ-6220-01 11 72554523 72554523 C T FCHSD2 Missense_Mutation p.E500K 0.16 deleterious(0) possibly_damaging(0.848) TCGA-CQ-6220-01 11 7949672 7949672 C T OR10A6 Missense_Mutation p.E180K 0.17 deleterious(0) probably_damaging(0.944) TCGA-CQ-6220-01 11 82444469 82444469 G C FAM181B Missense_Mutation p.I101M 0.29 deleterious(0) possibly_damaging(0.844) TCGA-CQ-6220-01 11 92085885 92085885 C T FAT3 Missense_Mutation p.L203F 0.15 probably_damaging(1) TCGA-CQ-6220-01 11 93212165 93212165 G A SMCO4 3'UTR 0.28 TCGA-CQ-6220-01 12 100550741 100550741 A G AC010203.1 3'Flank 0.12 TCGA-CQ-6220-01 12 123915096 123915096 C T RILPL2 Silent p.S150S 0.05 TCGA-CQ-6220-01 12 132514446 132514446 C T EP400 Missense_Mutation p.S1861L 0.16 unknown(0) TCGA-CQ-6220-01 12 133306539 133306539 C G ANKLE2 Missense_Mutation p.D737H 0.06 deleterious(0.03) possibly_damaging(0.907) TCGA-CQ-6220-01 12 1993939 1993939 A T CACNA2D4 Missense_Mutation p.C423S 0.23 deleterious(0.01) benign(0.001) TCGA-CQ-6220-01 12 46591510 46591510 C G SLC38A1 Missense_Mutation p.R452T 0.22 deleterious(0) probably_damaging(0.997) TCGA-CQ-6220-01 12 56221128 56221128 C T DNAJC14 Missense_Mutation p.E439K 0.06 deleterious(0) probably_damaging(0.934) TCGA-CQ-6220-01 12 56677625 56677625 C G CS Missense_Mutation p.R73T 0.16 deleterious(0) probably_damaging(0.925) TCGA-CQ-6220-01 12 58113926 58113926 C T OS9 Missense_Mutation p.R549C 0.21 deleterious(0) possibly_damaging(0.677) TCGA-CQ-6220-01 12 69652600 69652600 C T CPSF6 Missense_Mutation p.P309S 0.17 tolerated(0.84) unknown(0) TCGA-CQ-6220-01 13 111111187 111111187 C A COL4A2 Missense_Mutation p.P501H 0.13 probably_damaging(0.984) TCGA-CQ-6220-01 14 102506067 102506067 G T DYNC1H1 Silent p.V3896V 0.14 TCGA-CQ-6220-01 14 23858093 23858093 G A MYH6 Missense_Mutation p.R1384W 0.33 deleterious(0) probably_damaging(0.999) TCGA-CQ-6220-01 14 73743879 73743879 G A NUMB Nonsense_Mutation p.Q455* 0.27 TCGA-CQ-6220-01 15 26825502 26825502 G A GABRB3 Missense_Mutation p.H216Y 0.15 tolerated(1) benign(0.001) TCGA-CQ-6220-01 15 44816367 44816367 G C CTDSPL2 Missense_Mutation p.D466H 0.07 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CQ-6220-01 15 90168550 90168550 C T TICRR Missense_Mutation p.S1670F 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-6220-01 15 90169002 90169002 G C TICRR Missense_Mutation p.E1821Q 0.13 deleterious(0.05) probably_damaging(0.976) TCGA-CQ-6220-01 16 1510884 1510884 G A CLCN7 Silent p.L139L 0.26 TCGA-CQ-6220-01 16 16184309 16184309 C T ABCC1 Silent p.D836D 0.11 TCGA-CQ-6220-01 16 20999081 20999081 G C DNAH3 Silent p.V2272V 0.12 TCGA-CQ-6220-01 16 29675887 29675887 C T SPN Missense_Mutation p.R280W 0.14 deleterious(0.03) probably_damaging(0.942) TCGA-CQ-6220-01 16 3063471 3063471 C T CLDN9 Silent p.I36I 0.17 TCGA-CQ-6220-01 16 7568266 7568266 G A RBFOX1 Missense_Mutation p.A69T 0.28 tolerated(1) benign(0.048) TCGA-CQ-6220-01 17 25746864 25746864 G A TBC1D3P5 RNA 0.33 TCGA-CQ-6220-01 17 39881315 39881315 C A HAP1 Nonsense_Mutation p.E500* 0.12 TCGA-CQ-6220-01 17 57350187 57350187 G A GDPD1 Missense_Mutation p.R271Q 0.43 deleterious(0) probably_damaging(1) TCGA-CQ-6220-01 17 59112065 59112065 C T BCAS3 Missense_Mutation p.S574L 0.22 tolerated(0.1) probably_damaging(0.917) TCGA-CQ-6220-01 17 72838560 72838560 G C GRIN2C 3'UTR 0.14 TCGA-CQ-6220-01 17 74060213 74060213 C G SRP68 Missense_Mutation p.W135C 0.10 deleterious(0.03) probably_damaging(0.994) TCGA-CQ-6220-01 17 7577100 7577100 T C TP53 Missense_Mutation p.R280G 0.58 deleterious(0) probably_damaging(0.947) TCGA-CQ-6220-01 17 77808429 77808429 G A CBX4 Missense_Mutation p.P338S 0.11 tolerated(0.29) benign(0.001) TCGA-CQ-6220-01 17 77808470 77808470 G A CBX4 Missense_Mutation p.P324L 0.10 tolerated(0.33) possibly_damaging(0.735) TCGA-CQ-6220-01 17 7916484 7916484 C T GUCY2D Missense_Mutation p.A726V 0.16 tolerated(0.1) benign(0.383) TCGA-CQ-6220-01 18 21723218 21723218 A G CABYR Missense_Mutation p.Y47C 0.18 deleterious(0) possibly_damaging(0.893) TCGA-CQ-6220-01 18 52896157 52896157 C G TCF4 Missense_Mutation p.K702N 0.19 tolerated(0.28) possibly_damaging(0.49) TCGA-CQ-6220-01 19 15226688 15226688 G A ILVBL Silent p.I529I 0.38 TCGA-CQ-6220-01 19 17010309 17010309 G A CPAMD8 Nonsense_Mutation p.R1656* 0.13 TCGA-CQ-6220-01 19 18232697 18232697 G A MAST3 Silent p.S66S 0.21 TCGA-CQ-6220-01 19 33470804 33470804 G C RHPN2 3'UTR 0.38 TCGA-CQ-6220-01 19 44901376 44901376 C T ZNF285 Translation_Start_Site p.M1? 0.05 deleterious(0) possibly_damaging(0.827) TCGA-CQ-6220-01 19 51218989 51218989 T A SHANK1 Splice_Site p.X154_splice 0.46 TCGA-CQ-6220-01 19 55493937 55493937 G C NLRP2 Missense_Mutation p.D291H 0.09 deleterious(0) probably_damaging(0.985) TCGA-CQ-6220-01 19 58438123 58438123 G C ZNF418 Missense_Mutation p.H476D 0.37 deleterious(0) probably_damaging(0.922) TCGA-CQ-6220-01 1 11167399 11167399 T G MTOR 3'UTR 0.11 TCGA-CQ-6220-01 1 151491340 151491340 G A CGN Silent p.S115S 0.27 TCGA-CQ-6220-01 1 156450662 156450662 G T MEF2D Silent p.A120A 0.39 TCGA-CQ-6220-01 1 158607998 158607998 C A SPTA1 Missense_Mutation p.D1672Y 0.39 deleterious(0.01) possibly_damaging(0.736) TCGA-CQ-6220-01 1 160853237 160853237 G A ITLN1 Silent p.D46D 0.34 TCGA-CQ-6220-01 1 170695426 170695426 C T PRRX1 Silent p.N161N 0.39 TCGA-CQ-6220-01 1 200959778 200959778 G A KIF21B Nonsense_Mutation p.R921* 0.12 TCGA-CQ-6220-01 1 231131561 231131561 G A ARV1 Missense_Mutation p.M168I 0.15 tolerated(0.45) benign(0.002) TCGA-CQ-6220-01 1 231131562 231131562 A C ARV1 Missense_Mutation p.T169P 0.14 tolerated(0.19) possibly_damaging(0.653) TCGA-CQ-6220-01 20 13763716 13763716 T G ESF1 Missense_Mutation p.E24A 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-CQ-6220-01 20 3211607 3211607 G A SLC4A11 Silent p.L423L 0.09 TCGA-CQ-6220-01 20 33582110 33582110 C T MYH7B Missense_Mutation p.A911V 0.06 benign(0.023) TCGA-CQ-6220-01 20 46386015 46386015 C G SULF2 Silent p.L31L 0.47 TCGA-CQ-6220-01 20 62198219 62198219 C G HELZ2 Missense_Mutation p.C831S 0.12 deleterious(0) probably_damaging(0.999) TCGA-CQ-6220-01 22 24621019 24621019 G A GGT5 Missense_Mutation p.P521L 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-CQ-6220-01 22 29446049 29446049 C G ZNRF3 Missense_Mutation p.S627C 0.30 deleterious_low_confidence(0.03) benign(0.019) TCGA-CQ-6220-01 22 39497291 39497291 G A APOBEC3H Missense_Mutation p.G67E 0.27 tolerated(1) benign(0.017) TCGA-CQ-6220-01 22 50687866 50687866 C T HDAC10 Nonsense_Mutation p.W194* 0.08 TCGA-CQ-6220-01 2 143643039 143643039 G A KYNU Missense_Mutation p.E35K 0.26 tolerated(0.15) benign(0.001) TCGA-CQ-6220-01 2 152512971 152512971 T C NEB Missense_Mutation p.Y2064C 0.30 probably_damaging(1) TCGA-CQ-6220-01 2 170009349 170009349 C A LRP2 Missense_Mutation p.V4141L 0.25 benign(0.004) TCGA-CQ-6220-01 2 179426874 179426874 G T TTN Missense_Mutation p.N27995K 0.36 TCGA-CQ-6220-01 2 202131421 202131421 G C CASP8 Missense_Mutation p.R130T 0.32 deleterious(0) probably_damaging(0.969) TCGA-CQ-6220-01 2 220077120 220077120 C G ABCB6 Missense_Mutation p.D653H 0.12 deleterious(0.01) possibly_damaging(0.495) TCGA-CQ-6220-01 2 222347096 222347096 C G EPHA4 Missense_Mutation p.V432L 0.09 tolerated(0.11) benign(0) TCGA-CQ-6220-01 2 234637859 234637859 A G UGT1A3 Silent p.G29G 0.18 TCGA-CQ-6220-01 2 234637866 234637866 T C UGT1A3 Silent p.L32L 0.13 TCGA-CQ-6220-01 2 29474101 29474101 C T ALK Missense_Mutation p.G692R 0.14 deleterious(0) probably_damaging(1) TCGA-CQ-6220-01 2 86832193 86832193 C G RNF103 Missense_Mutation p.M277I 0.14 tolerated(0.43) benign(0.002) TCGA-CQ-6220-01 3 130285812 130285812 G A COL6A6 Missense_Mutation p.A517T 0.22 tolerated(0.25) probably_damaging(1) TCGA-CQ-6220-01 3 185184704 185184704 C A MAP3K13 Silent p.L532L 0.11 TCGA-CQ-6220-01 3 36872599 36872599 T C TRANK1 Silent p.E2781E 0.36 TCGA-CQ-6220-01 3 7188209 7188209 G A GRM7 Missense_Mutation p.R197H 0.22 deleterious(0) probably_damaging(0.998) TCGA-CQ-6220-01 4 103718415 103718415 G T UBE2D3 3'Flank 0.38 TCGA-CQ-6220-01 4 155158175 155158175 G A DCHS2 Silent p.N2088N 0.20 TCGA-CQ-6220-01 4 156860670 156860670 G A CTSO Silent p.F135F 0.15 TCGA-CQ-6220-01 4 57514832 57514832 G A HOPX 3'UTR 0.16 TCGA-CQ-6220-01 4 72623827 72623827 C T GC Missense_Mutation p.A274T 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-CQ-6220-01 5 140865546 140865546 C T PCDHGC4 Missense_Mutation p.P269L 0.10 tolerated(0.44) benign(0.051) TCGA-CQ-6220-01 5 149636340 149636340 C T CAMK2A Silent p.E109E 0.30 TCGA-CQ-6220-01 5 158630649 158630649 T C RNF145 Missense_Mutation p.K23E 0.23 tolerated_low_confidence(0.48) benign(0.009) TCGA-CQ-6220-01 5 161277887 161277887 G T GABRA1 Missense_Mutation p.R24I 0.16 tolerated(0.22) benign(0.001) TCGA-CQ-6220-01 5 38950723 38950723 G C RICTOR Missense_Mutation p.S1076C 0.14 tolerated(0.11) possibly_damaging(0.478) TCGA-CQ-6220-01 5 63257091 63257091 G A HTR1A Silent p.R152R 0.21 TCGA-CQ-6220-01 5 79375854 79375854 T C THBS4 Missense_Mutation p.S880P 0.13 deleterious(0.02) benign(0.265) TCGA-CQ-6220-01 6 116879126 116879126 G C FAM26D Missense_Mutation p.E90Q 0.19 tolerated(0.58) benign(0.119) TCGA-CQ-6220-01 6 126661543 126661543 T C CENPW Silent p.L42L 0.19 TCGA-CQ-6220-01 6 144416375 144416375 C G SF3B5 Nonstop_Mutation p.*87Sext*53 0.14 TCGA-CQ-6220-01 6 170155405 170155405 G A ERMARD Missense_Mutation p.V68M 0.11 deleterious(0) probably_damaging(0.999) TCGA-CQ-6220-01 6 27839968 27839968 G A HIST1H3I Silent p.Y42Y 0.30 TCGA-CQ-6220-01 6 29430027 29430027 A G OR2H1 Missense_Mutation p.T161A 0.11 deleterious(0.01) probably_damaging(0.936) TCGA-CQ-6220-01 6 89978925 89978925 T C GABRR2 Missense_Mutation p.H106R 0.25 deleterious(0) probably_damaging(0.957) TCGA-CQ-6220-01 7 1028170 1028170 G A CYP2W1 Intron 0.33 TCGA-CQ-6220-01 7 122342351 122342351 C T RNF148 Missense_Mutation p.A152T 0.28 deleterious(0.03) benign(0.331) TCGA-CQ-6220-01 7 133682292 133682292 G C EXOC4 Missense_Mutation p.V752L 0.26 tolerated(0.38) benign(0.002) TCGA-CQ-6220-01 7 13950933 13950933 C G ETV1 Splice_Site p.X268_splice 0.21 TCGA-CQ-6220-01 7 143807496 143807496 C G OR2A2 Missense_Mutation p.S274C 0.30 deleterious(0.03) probably_damaging(0.988) TCGA-CQ-6220-01 7 152346214 152346214 T A XRCC2 Missense_Mutation p.Y119F 0.08 tolerated(0.11) benign(0.364) TCGA-CQ-6220-01 7 158476042 158476042 G A NCAPG2 Missense_Mutation p.H292Y 0.13 tolerated(0.07) benign(0.198) TCGA-CQ-6220-01 8 113259313 113259313 T A CSMD3 Missense_Mutation p.Q3386H 0.12 tolerated(0.07) benign(0.012) TCGA-CQ-6220-01 8 113585877 113585877 C G CSMD3 Missense_Mutation p.G1299R 0.12 deleterious(0) probably_damaging(0.997) TCGA-CQ-6220-01 8 119122780 119122780 T C EXT1 Missense_Mutation p.Q169R 0.13 tolerated(0.2) benign(0.024) TCGA-CQ-6220-01 8 120629779 120629779 G C ENPP2 Missense_Mutation p.I168M 0.32 tolerated(0.21) benign(0.131) TCGA-CQ-6220-01 8 139164784 139164784 C T FAM135B Missense_Mutation p.S645N 0.17 tolerated(0.3) benign(0.004) TCGA-CQ-6220-01 8 140630759 140630759 G A KCNK9 Silent p.D289D 0.14 TCGA-CQ-6220-01 8 15517104 15517104 G A TUSC3 Missense_Mutation p.G172E 0.13 deleterious(0) probably_damaging(1) TCGA-CQ-6220-01 8 41581097 41581097 G T ANK1 Silent p.R289R 0.26 TCGA-CQ-6220-01 8 99040003 99040003 G A MATN2 Missense_Mutation p.D768N 0.12 deleterious(0) probably_damaging(1) TCGA-CQ-6220-01 9 113096542 113096542 G C TXNDC8 Missense_Mutation p.S28C 0.22 deleterious(0.02) probably_damaging(1) TCGA-CQ-6220-01 9 21974703 21974703 T G CDKN2A Missense_Mutation p.N42H 0.56 deleterious(0) probably_damaging(1) TCGA-CQ-6220-01 X 129281541 129281541 C G AIFM1 Missense_Mutation p.E178Q 0.28 deleterious(0) probably_damaging(0.966) TCGA-CQ-6220-01 X 133963253 133963253 C T FAM122C Intron 0.23 TCGA-CQ-6220-01 X 96136646 96136646 G C DIAPH2 Silent p.S172S 0.50 TCGA-CQ-6221-01 10 105207026 105207026 G C CALHM2 Nonsense_Mutation p.Y285* 0.30 TCGA-CQ-6221-01 10 16873286 16873286 C T CUBN Missense_Mutation p.R3498H 0.45 tolerated(0.25) benign(0.005) TCGA-CQ-6221-01 10 28272787 28272787 T A ARMC4 Silent p.G268G 0.30 TCGA-CQ-6221-01 10 32740540 32740540 T A CCDC7 5'UTR 0.33 TCGA-CQ-6221-01 10 45799323 45799323 C G OR13A1 Missense_Mutation p.R183P 0.28 tolerated(0.1) benign(0.088) TCGA-CQ-6221-01 10 69881386 69881386 C T MYPN Missense_Mutation p.S64L 0.26 deleterious(0) probably_damaging(0.996) TCGA-CQ-6221-01 11 27016191 27016191 G C FIBIN Missense_Mutation p.D40H 0.51 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CQ-6221-01 11 34978997 34978997 G C PDHX Missense_Mutation p.D137H 0.25 deleterious(0) probably_damaging(0.988) TCGA-CQ-6221-01 11 36595094 36595094 G C RAG1 Missense_Mutation p.L80F 0.13 tolerated_low_confidence(0.07) benign(0.001) TCGA-CQ-6221-01 11 62291028 62291028 C T AHNAK Missense_Mutation p.E3621K 0.48 benign(0.017) TCGA-CQ-6221-01 11 62291184 62291184 C T AHNAK Missense_Mutation p.E3569K 0.60 probably_damaging(0.968) TCGA-CQ-6221-01 11 62292529 62292529 C T AHNAK Missense_Mutation p.M3120I 0.48 benign(0.002) TCGA-CQ-6221-01 11 62292958 62292958 C T AHNAK Silent p.V2977V 0.48 TCGA-CQ-6221-01 11 62294979 62294979 C G AHNAK Missense_Mutation p.E2304Q 0.47 possibly_damaging(0.535) TCGA-CQ-6221-01 11 62295736 62295736 C A AHNAK Missense_Mutation p.M2051I 0.51 benign(0.003) TCGA-CQ-6221-01 11 62296638 62296638 C T AHNAK Missense_Mutation p.D1751N 0.55 possibly_damaging(0.728) TCGA-CQ-6221-01 11 62299829 62299871 AGCTTAACATCGGGGCCTTTAAGTTTTCCCCCCAGACCCTCCA - AHNAK Frame_Shift_Del p.L673Cfs*4 0.32 TCGA-CQ-6221-01 11 6503307 6503307 G C TIMM10B Silent p.L56L 0.25 TCGA-CQ-6221-01 11 92523229 92523229 G C FAT3 Missense_Mutation p.D1486H 0.46 probably_damaging(1) TCGA-CQ-6221-01 12 102224481 102224481 G A GNPTAB 5'UTR 0.24 TCGA-CQ-6221-01 12 113442855 113442855 C A OAS2 Silent p.V432V 0.13 TCGA-CQ-6221-01 12 117703229 117703230 - C NOS1 Frame_Shift_Ins p.C677Lfs*38 0.50 TCGA-CQ-6221-01 12 332337 332337 C A SLC6A13 Missense_Mutation p.V459L 0.24 tolerated(1) possibly_damaging(0.746) TCGA-CQ-6221-01 12 48962875 48962875 G C LALBA Missense_Mutation p.I94M 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-CQ-6221-01 12 49443703 49443703 G C KMT2D Nonsense_Mutation p.S1223* 0.40 TCGA-CQ-6221-01 12 58162860 58162879 CTTCCCTCCATTACGTAGAA - METTL1 Frame_Shift_Del p.V244Efs*100 0.32 TCGA-CQ-6221-01 12 675268 675268 A G NINJ2 Missense_Mutation p.M83T 0.26 deleterious(0) possibly_damaging(0.736) TCGA-CQ-6221-01 13 39587551 39587551 C A PROSER1 Missense_Mutation p.S613I 0.43 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CQ-6221-01 13 52603224 52603229 CTTCAT - UTP14C In_Frame_Del p.S97_S98del 0.08 TCGA-CQ-6221-01 13 53419750 53419750 C T PCDH8 Silent p.P883P 0.11 TCGA-CQ-6221-01 13 92051386 92051386 C T GPC5 Missense_Mutation p.T29I 0.71 deleterious(0) benign(0.431) TCGA-CQ-6221-01 14 106780691 106780691 C T IGHV4-28 Missense_Mutation p.R58Q 0.52 deleterious(0.01) possibly_damaging(0.593) TCGA-CQ-6221-01 15 44862786 44862786 G A SPG11 Silent p.V2138V 0.16 TCGA-CQ-6221-01 15 48060877 48060877 G A SEMA6D Missense_Mutation p.R622Q 0.17 tolerated(0.34) benign(0.359) TCGA-CQ-6221-01 15 50791327 50791327 G C USP8 3'UTR 0.17 TCGA-CQ-6221-01 15 54707262 54707262 G T UNC13C Nonsense_Mutation p.E1644* 0.30 TCGA-CQ-6221-01 15 56719843 56719843 A T TEX9 Missense_Mutation p.K335I 0.19 tolerated(0.05) possibly_damaging(0.499) TCGA-CQ-6221-01 15 58306120 58306120 G C ALDH1A2 Nonsense_Mutation p.S100* 0.23 TCGA-CQ-6221-01 15 64495283 64495283 G C CSNK1G1 Missense_Mutation p.Q369E 0.38 tolerated(0.05) possibly_damaging(0.662) TCGA-CQ-6221-01 15 89169569 89169569 G A AEN Silent p.R43R 0.81 TCGA-CQ-6221-01 15 90771754 90771754 G C SEMA4B Missense_Mutation p.R798P 0.43 tolerated(0.07) benign(0.041) TCGA-CQ-6221-01 16 20673130 20673130 C T ACSM1 Silent p.Q326Q 0.42 TCGA-CQ-6221-01 16 21086866 21086878 CACCAATGGGCTC - DNAH3 Frame_Shift_Del p.E992Qfs*16 0.32 TCGA-CQ-6221-01 16 2333284 2333284 G C ABCA3 Nonsense_Mutation p.S1313* 0.33 TCGA-CQ-6221-01 16 31374532 31374532 A T ITGAX Missense_Mutation p.H516L 0.18 deleterious(0) benign(0.12) TCGA-CQ-6221-01 16 58031375 58031375 C A ZNF319 Missense_Mutation p.K265N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CQ-6221-01 16 69400835 69400843 GACCAATCT - TERF2 In_Frame_Del p.R361_V363del 0.33 TCGA-CQ-6221-01 16 70843707 70843707 C G HYDIN Missense_Mutation p.Q4954H 0.38 possibly_damaging(0.891) TCGA-CQ-6221-01 17 12655998 12655998 C T MYOCD Silent p.L465L 0.18 TCGA-CQ-6221-01 17 12893492 12893492 G A ARHGAP44 3'UTR 0.25 TCGA-CQ-6221-01 17 19698941 19698941 C G ULK2 Missense_Mutation p.D699H 0.38 deleterious(0) probably_damaging(0.999) TCGA-CQ-6221-01 17 19699443 19699443 C T ULK2 Silent p.Q654Q 0.42 TCGA-CQ-6221-01 17 27228113 27228113 C A DHRS13 Nonsense_Mutation p.E193* 0.33 TCGA-CQ-6221-01 17 35986901 35986901 G C DDX52 Missense_Mutation p.L289V 0.20 deleterious(0.02) probably_damaging(0.935) TCGA-CQ-6221-01 17 38032946 38032946 C G ZPBP2 Missense_Mutation p.P301A 0.23 deleterious(0) probably_damaging(1) TCGA-CQ-6221-01 17 38976763 38976763 C G KRT10 Missense_Mutation p.E289D 0.10 deleterious(0) probably_damaging(0.927) TCGA-CQ-6221-01 17 42636331 42636331 C G FZD2 Missense_Mutation p.F425L 0.18 tolerated(0.58) benign(0.015) TCGA-CQ-6221-01 17 59962319 59962319 G C INTS2 Missense_Mutation p.Q686E 0.47 tolerated(0.81) benign(0.12) TCGA-CQ-6221-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.73 deleterious(0) probably_damaging(0.997) TCGA-CQ-6221-01 17 78184560 78184560 C T SGSH Silent p.Q400Q 0.33 TCGA-CQ-6221-01 17 8017844 8017844 G C ALOXE3 Nonsense_Mutation p.S345* 0.31 TCGA-CQ-6221-01 19 13409899 13409899 C T CACNA1A Missense_Mutation p.G850S 0.50 probably_damaging(0.972) TCGA-CQ-6221-01 19 15355574 15355574 C T BRD4 Splice_Site p.X720_splice 0.32 TCGA-CQ-6221-01 19 23405833 23405833 G T ZNF724P Missense_Mutation p.T405K 0.38 tolerated(0.35) benign(0.007) TCGA-CQ-6221-01 19 37117054 37117054 T C ZNF382 Silent p.D85D 0.31 TCGA-CQ-6221-01 19 43979500 43979500 C G PHLDB3 3'UTR 0.36 TCGA-CQ-6221-01 19 56203256 56203256 C T EPN1 Missense_Mutation p.P386L 0.24 deleterious(0.05) benign(0.002) TCGA-CQ-6221-01 19 58965127 58965127 C G ZNF324B Missense_Mutation p.T20R 0.29 deleterious(0.03) possibly_damaging(0.841) TCGA-CQ-6221-01 19 8154783 8154783 C A FBN3 Missense_Mutation p.R2082L 0.62 tolerated(0.29) possibly_damaging(0.851) TCGA-CQ-6221-01 1 10318626 10318626 G C KIF1B Missense_Mutation p.E87Q 0.30 deleterious(0.02) possibly_damaging(0.768) TCGA-CQ-6221-01 1 109810498 109810498 C G CELSR2 Nonsense_Mutation p.S2045* 0.08 TCGA-CQ-6221-01 1 109897086 109897086 G A SORT1 Missense_Mutation p.A204V 0.28 deleterious(0.03) benign(0.105) TCGA-CQ-6221-01 1 12443180 12443180 G C VPS13D Missense_Mutation p.R3779T 0.17 benign(0.139) TCGA-CQ-6221-01 1 154306629 154306629 C T ATP8B2 Silent p.S245S 0.38 TCGA-CQ-6221-01 1 204413526 204413526 A T PIK3C2B Missense_Mutation p.M902K 0.21 tolerated(0.13) benign(0.257) TCGA-CQ-6221-01 1 24706250 24706250 C G STPG1 Missense_Mutation p.D119H 0.17 tolerated(0.26) benign(0.002) TCGA-CQ-6221-01 1 247587937 247587937 C G NLRP3 Missense_Mutation p.L398V 0.35 deleterious(0.04) possibly_damaging(0.867) TCGA-CQ-6221-01 1 37291332 37291332 G T GRIK3 Silent p.I542I 0.39 TCGA-CQ-6221-01 1 38280845 38280845 T C MTF1 Missense_Mutation p.E742G 0.08 deleterious_low_confidence(0.05) probably_damaging(0.979) TCGA-CQ-6221-01 1 47183657 47183657 C G EFCAB14 Missense_Mutation p.E35Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-CQ-6221-01 1 6209356 6209356 C G CHD5 Missense_Mutation p.D371H 0.12 deleterious(0) probably_damaging(0.992) TCGA-CQ-6221-01 1 7724545 7724545 G C CAMTA1 Silent p.T646T 0.24 TCGA-CQ-6221-01 1 89616257 89616257 G A GBP7 Silent p.G209G 0.13 TCGA-CQ-6221-01 1 906212 906212 G T PLEKHN1 Intron 0.36 TCGA-CQ-6221-01 20 35444329 35444329 C G SOGA1 Missense_Mutation p.G506R 0.44 tolerated(0.12) probably_damaging(0.994) TCGA-CQ-6221-01 20 56073444 56073444 C T CTCFL Intron 0.24 TCGA-CQ-6221-01 21 43258051 43258051 C T PRDM15 Silent p.S697S 0.33 TCGA-CQ-6221-01 22 16279217 16279217 T A POTEH Missense_Mutation p.N336Y 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-CQ-6221-01 22 20130547 20130547 T C ZDHHC8 Missense_Mutation p.F465S 0.09 tolerated(0.06) probably_damaging(0.997) TCGA-CQ-6221-01 22 20720865 20720865 C G USP41 Missense_Mutation p.E295Q 0.18 tolerated(0.23) benign(0.059) TCGA-CQ-6221-01 22 22020287 22020287 C G PPIL2 5'UTR 0.25 TCGA-CQ-6221-01 22 30639706 30639706 C G LIF Missense_Mutation p.K181N 0.24 deleterious(0) probably_damaging(0.996) TCGA-CQ-6221-01 22 38016337 38016337 C G GGA1 Missense_Mutation p.I132M 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-CQ-6221-01 22 38694865 38694865 G C CSNK1E Missense_Mutation p.Q271E 0.25 deleterious_low_confidence(0) possibly_damaging(0.815) TCGA-CQ-6221-01 2 133402786 133402786 G T GPR39 Missense_Mutation p.M323I 0.31 tolerated(1) benign(0.014) TCGA-CQ-6221-01 2 140990753 140990753 G C LRP1B 3'UTR 0.26 TCGA-CQ-6221-01 2 175263019 175263019 C A SCRN3 Missense_Mutation p.P3H 0.10 deleterious(0) probably_damaging(0.967) TCGA-CQ-6221-01 2 175330545 175330545 T C GPR155 Missense_Mutation p.Y451C 0.25 tolerated(0.13) benign(0.104) TCGA-CQ-6221-01 2 190445290 190445290 T C SLC40A1 5'UTR 0.26 TCGA-CQ-6221-01 2 190927237 190927237 T C MSTN Missense_Mutation p.Q29R 0.31 tolerated_low_confidence(0.6) benign(0.003) TCGA-CQ-6221-01 2 201726085 201726085 C G CLK1 Missense_Mutation p.R131P 0.33 tolerated(0.2) benign(0.002) TCGA-CQ-6221-01 2 219362475 219362475 G C USP37 Missense_Mutation p.F421L 0.34 deleterious(0) probably_damaging(1) TCGA-CQ-6221-01 2 228476316 228476316 C T C2orf83 Missense_Mutation p.V83I 0.35 deleterious_low_confidence(0.01) benign(0.103) TCGA-CQ-6221-01 2 230272008 230272008 C G DNER Missense_Mutation p.G555R 0.20 tolerated(0.09) possibly_damaging(0.534) TCGA-CQ-6221-01 2 242441064 242441064 C T STK25 Silent p.S30S 0.06 TCGA-CQ-6221-01 2 27803934 27803934 G C C2orf16 Missense_Mutation p.E1499Q 0.32 tolerated(0.08) unknown(0) TCGA-CQ-6221-01 2 30143411 30143411 G A ALK Nonsense_Mutation p.Q39* 0.19 TCGA-CQ-6221-01 2 37310507 37310507 G A HEATR5B Silent p.I17I 0.27 TCGA-CQ-6221-01 2 54481993 54481993 C G TSPYL6 3'UTR 0.24 TCGA-CQ-6221-01 2 9642395 9642395 T A ADAM17 Missense_Mutation p.S519C 0.51 deleterious(0) probably_damaging(0.997) TCGA-CQ-6221-01 2 9728378 9728378 G C YWHAQ Missense_Mutation p.I166M 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-CQ-6221-01 3 180328289 180328289 G A TTC14 Missense_Mutation p.A758T 0.08 deleterious_low_confidence(0) unknown(0) TCGA-CQ-6221-01 3 183006931 183006931 C T MCF2L2 Missense_Mutation p.D585N 0.38 tolerated(0.31) benign(0.002) TCGA-CQ-6221-01 3 183756319 183756329 CTGCTGCTGCA - HTR3D Frame_Shift_Del p.L349Hfs*16 0.22 TCGA-CQ-6221-01 3 184910480 184910493 CCTAATTCACAGAG - EHHADH Frame_Shift_Del p.L565Tfs*8 0.17 TCGA-CQ-6221-01 3 186504469 186504469 C T EIF4A2 Intron 0.39 TCGA-CQ-6221-01 3 195516484 195516484 G C MUC4 Missense_Mutation p.S656C 0.06 unknown(0) TCGA-CQ-6221-01 4 153247255 153247255 C T FBXW7 Missense_Mutation p.S516N 0.16 deleterious(0) probably_damaging(1) TCGA-CQ-6221-01 4 26432465 26432465 G C RBPJ Missense_Mutation p.E447Q 0.28 deleterious(0) possibly_damaging(0.525) TCGA-CQ-6221-01 4 2717749 2717749 G C FAM193A Splice_Site p.X1208_splice 0.33 TCGA-CQ-6221-01 4 62849282 62849282 C T LPHN3 Missense_Mutation p.S998L 0.29 deleterious(0) probably_damaging(0.999) TCGA-CQ-6221-01 4 70360953 70360953 C T UGT2B4 Silent p.E209E 0.28 TCGA-CQ-6221-01 4 71509483 71509483 G A ENAM Silent p.P780P 0.35 TCGA-CQ-6221-01 5 132427046 132427046 C T HSPA4 Nonsense_Mutation p.Q514* 0.46 TCGA-CQ-6221-01 5 15937151 15937151 G - FBXL7 Frame_Shift_Del p.G445Afs*15 0.32 TCGA-CQ-6221-01 6 111680071 111680071 G A REV3L Silent p.L2342L 0.30 TCGA-CQ-6221-01 6 117708099 117708099 C T ROS1 Missense_Mutation p.S693N 0.36 tolerated(0.08) benign(0.008) TCGA-CQ-6221-01 6 146865145 146865145 C - RAB32 Frame_Shift_Del p.H47Tfs*45 0.31 TCGA-CQ-6221-01 6 158330947 158330947 A G SNX9 Missense_Mutation p.N280S 0.36 tolerated(0.07) probably_damaging(0.95) TCGA-CQ-6221-01 6 160176488 160176488 G A WTAP Missense_Mutation p.E346K 0.37 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CQ-6221-01 6 26234945 26234945 C T HIST1H1D Missense_Mutation p.D73N 0.28 tolerated(0.16) possibly_damaging(0.894) TCGA-CQ-6221-01 6 80383466 80383466 C G SH3BGRL2 Missense_Mutation p.Q61E 0.30 tolerated(0.29) benign(0.034) TCGA-CQ-6221-01 6 91246083 91246083 C G MAP3K7 Missense_Mutation p.L443F 0.30 tolerated(0.08) probably_damaging(0.943) TCGA-CQ-6221-01 7 93633568 93633568 T C BET1 5'UTR 0.23 TCGA-CQ-6221-01 8 10285683 10285683 C T MSRA Missense_Mutation p.P190L 0.32 tolerated(0.23) benign(0.005) TCGA-CQ-6221-01 8 103301699 103301699 A T UBR5 Silent p.V1565V 0.20 TCGA-CQ-6221-01 8 109254111 109254111 T G EIF3E Missense_Mutation p.K41T 0.20 deleterious(0) probably_damaging(0.993) TCGA-CQ-6221-01 8 145107094 145107094 C A OPLAH Missense_Mutation p.D1147Y 0.50 deleterious(0) probably_damaging(1) TCGA-CQ-6221-01 8 21958395 21958395 G A FAM160B2 Missense_Mutation p.D510N 0.31 tolerated(0.19) benign(0.016) TCGA-CQ-6221-01 8 24326281 24326281 G A ADAM7 Missense_Mutation p.G194D 0.07 tolerated(0.68) benign(0.001) TCGA-CQ-6221-01 8 30210600 30210600 T A TUBBP1 RNA 0.28 TCGA-CQ-6221-01 8 42176820 42176820 C G IKBKB Missense_Mutation p.S466C 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-CQ-6221-01 8 81897257 81897257 C G PAG1 Silent p.S210S 0.31 TCGA-CQ-6221-01 9 136202996 136202996 C G SURF6 5'UTR 0.65 TCGA-CQ-6221-01 9 139907546 139907546 G C ABCA2 Missense_Mutation p.P1592R 0.93 deleterious(0.04) possibly_damaging(0.9) TCGA-CQ-6221-01 X 107084609 107084609 A G MID2 Silent p.K238K 0.48 TCGA-CQ-6221-01 X 131212868 131212868 G C FRMD7 Missense_Mutation p.L393V 0.65 tolerated(0.08) benign(0.234) TCGA-CQ-6221-01 X 63412439 63412439 G A AMER1 Missense_Mutation p.P243L 0.60 tolerated(0.07) benign(0.006) TCGA-CQ-6221-01 X 70338616 70338616 C G MED12 Missense_Mutation p.F4L 0.67 probably_damaging(0.989) TCGA-CQ-6222-01 10 22898587 22898587 G A PIP4K2A Silent p.A68A 0.13 TCGA-CQ-6222-01 10 30315782 30315782 G A KIAA1462 Missense_Mutation p.L1099F 0.08 deleterious(0) probably_damaging(1) TCGA-CQ-6222-01 10 62023666 62023666 G A ANK3 Missense_Mutation p.A209V 0.18 probably_damaging(0.999) TCGA-CQ-6222-01 10 73521632 73521632 G T C10orf54 Silent p.G78G 0.10 TCGA-CQ-6222-01 11 130278733 130278733 G T ADAMTS8 Missense_Mutation p.S618Y 0.11 deleterious(0) probably_damaging(0.982) TCGA-CQ-6222-01 11 46898166 46898166 G A LRP4 Silent p.L1129L 0.12 TCGA-CQ-6222-01 11 67223166 67223166 C T CABP4 Missense_Mutation p.A91V 0.17 tolerated(0.06) benign(0.115) TCGA-CQ-6222-01 11 9500065 9500065 G A ZNF143 Missense_Mutation p.G168S 0.07 tolerated(0.23) benign(0.101) TCGA-CQ-6222-01 12 109194621 109194621 G A SSH1 Silent p.Y361Y 0.11 TCGA-CQ-6222-01 12 109617746 109617746 G A ACACB Missense_Mutation p.V558M 0.11 deleterious(0) probably_damaging(0.988) TCGA-CQ-6222-01 12 3048518 3048518 G A TULP3 Missense_Mutation p.V413M 0.09 deleterious(0.02) possibly_damaging(0.509) TCGA-CQ-6222-01 12 53471030 53471030 G T SPRYD3 Missense_Mutation p.N13K 0.20 tolerated_low_confidence(0.36) benign(0) TCGA-CQ-6222-01 13 25265211 25265211 G A ATP12A Silent p.T303T 0.11 TCGA-CQ-6222-01 14 89206756 89206756 A G EML5 Missense_Mutation p.I229T 0.09 tolerated(0.62) benign(0.003) TCGA-CQ-6222-01 16 16205306 16205306 C T ABCC1 Silent p.F982F 0.08 TCGA-CQ-6222-01 16 2153543 2153543 T C PKD1 Missense_Mutation p.I2839V 0.07 benign(0.341) TCGA-CQ-6222-01 16 87678468 87678468 G A JPH3 Silent p.P329P 0.07 TCGA-CQ-6222-01 17 3819509 3819509 C T P2RX1 Missense_Mutation p.R4Q 0.13 tolerated(0.61) benign(0.002) TCGA-CQ-6222-01 17 40714773 40714773 A G COASY Missense_Mutation p.M74V 0.05 tolerated(0.2) benign(0.08) TCGA-CQ-6222-01 17 63537655 63537655 C T AXIN2 Missense_Mutation p.R326H 0.11 deleterious(0) probably_damaging(0.944) TCGA-CQ-6222-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.21 deleterious(0) probably_damaging(0.997) TCGA-CQ-6222-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.12 TCGA-CQ-6222-01 18 48581208 48581208 C T SMAD4 Missense_Mutation p.S171L 0.10 tolerated(0.17) benign(0.002) TCGA-CQ-6222-01 18 48581281 48581281 C G SMAD4 Nonsense_Mutation p.Y195* 0.10 TCGA-CQ-6222-01 19 15739591 15739591 C A CYP4F8 RNA 0.16 TCGA-CQ-6222-01 19 35435248 35435248 G T ZNF30 Nonsense_Mutation p.E461* 0.14 TCGA-CQ-6222-01 19 8386936 8386936 C G RPS28 Missense_Mutation p.R63G 0.13 deleterious(0) unknown(0) TCGA-CQ-6222-01 1 111494604 111494604 G A LRIF1 Missense_Mutation p.T301M 0.08 tolerated(0.1) probably_damaging(0.968) TCGA-CQ-6222-01 1 120337248 120337248 C T REG4 Missense_Mutation p.R157Q 0.07 tolerated(0.32) benign(0.006) TCGA-CQ-6222-01 1 151156861 151156861 C T VPS72 Missense_Mutation p.R165Q 0.07 deleterious(0.04) possibly_damaging(0.833) TCGA-CQ-6222-01 1 152636834 152636834 C T LCE2D Missense_Mutation p.R85W 0.08 tolerated_low_confidence(0.12) unknown(0) TCGA-CQ-6222-01 1 210857106 210857106 G A KCNH1 Silent p.G829G 0.12 TCGA-CQ-6222-01 1 243736284 243736284 T C AKT3 Missense_Mutation p.I255V 0.24 deleterious(0.02) possibly_damaging(0.826) TCGA-CQ-6222-01 1 26751932 26751932 C T LIN28A Missense_Mutation p.R123W 0.08 tolerated(0.06) benign(0.018) TCGA-CQ-6222-01 1 31437649 31437650 - A PUM1 Frame_Shift_Ins p.Y732Lfs*2 0.09 TCGA-CQ-6222-01 21 16339480 16339480 A G NRIP1 Missense_Mutation p.V345A 0.13 tolerated(0.68) benign(0) TCGA-CQ-6222-01 22 31522415 31522415 C T INPP5J Missense_Mutation p.T74I 0.07 deleterious(0.01) probably_damaging(0.975) TCGA-CQ-6222-01 22 32007798 32007798 G A SFI1 Missense_Mutation p.R821Q 0.10 tolerated(0.25) benign(0.01) TCGA-CQ-6222-01 2 119726797 119726797 G A MARCO Silent p.L53L 0.10 TCGA-CQ-6222-01 2 135920601 135920601 G T RAB3GAP1 Missense_Mutation p.A846S 0.09 tolerated(0.08) benign(0.434) TCGA-CQ-6222-01 2 211179749 211179749 G A MYL1 Silent p.D6D 0.10 TCGA-CQ-6222-01 2 220098566 220098566 G A ANKZF1 Missense_Mutation p.G317R 0.10 tolerated(0.05) benign(0.288) TCGA-CQ-6222-01 2 54119989 54119989 T C PSME4 Missense_Mutation p.I1383V 0.05 tolerated(0.23) benign(0.002) TCGA-CQ-6222-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.13 tolerated(0.11) possibly_damaging(0.529) TCGA-CQ-6222-01 3 195517442 195517442 G C MUC4 Missense_Mutation p.Q337E 0.07 unknown(0) TCGA-CQ-6222-01 3 33038739 33038739 G A GLB1 Missense_Mutation p.S611L 0.09 deleterious(0.04) possibly_damaging(0.709) TCGA-CQ-6222-01 4 9784380 9784380 G A DRD5 Missense_Mutation p.V243M 0.15 deleterious(0.02) probably_damaging(0.982) TCGA-CQ-6222-01 5 150867642 150867642 G A SLC36A1 Missense_Mutation p.E420K 0.09 deleterious(0) probably_damaging(0.96) TCGA-CQ-6222-01 5 150921902 150921902 T - FAT2 Frame_Shift_Del p.K2929Rfs*103 0.10 TCGA-CQ-6222-01 5 50057654 50057654 G T PARP8 Splice_Site p.X116_splice 0.08 TCGA-CQ-6222-01 6 12161735 12161735 A G HIVEP1 Missense_Mutation p.D2184G 0.11 deleterious(0.03) probably_damaging(0.945) TCGA-CQ-6222-01 6 144263171 144263171 T C PLAGL1 Missense_Mutation p.H261R 0.13 deleterious(0.01) benign(0.126) TCGA-CQ-6222-01 6 153073384 153073384 G A VIP Silent p.S24S 0.16 TCGA-CQ-6222-01 6 155565824 155565824 G A TIAM2 Missense_Mutation p.M1150I 0.07 deleterious(0) possibly_damaging(0.712) TCGA-CQ-6222-01 6 168352492 168352492 G A MLLT4 Silent p.R1479R 0.09 TCGA-CQ-6222-01 6 26056552 26056552 C T HIST1H1C Silent p.A35A 0.09 TCGA-CQ-6222-01 6 90380712 90380712 A G MDN1 Missense_Mutation p.S4628P 0.04 possibly_damaging(0.723) TCGA-CQ-6222-01 7 94539551 94539551 A G PPP1R9A Silent p.E42E 0.11 TCGA-CQ-6222-01 8 139635989 139635989 G C COL22A1 Missense_Mutation p.P1253A 0.23 unknown(0) TCGA-CQ-6222-01 8 21857170 21857170 G T XPO7 Nonsense_Mutation p.G923* 0.10 TCGA-CQ-6222-01 8 64099642 64099642 G A YTHDF3 Missense_Mutation p.R357H 0.24 deleterious(0.05) possibly_damaging(0.715) TCGA-CQ-6222-01 9 113563104 113563104 C T MUSK Nonsense_Mutation p.R816* 0.10 TCGA-CQ-6222-01 9 35555624 35555624 G A RUSC2 Missense_Mutation p.R861Q 0.12 tolerated(0.22) possibly_damaging(0.801) TCGA-CQ-6222-01 9 6893144 6893144 A T KDM4C Missense_Mutation p.H278L 0.08 deleterious(0) probably_damaging(1) TCGA-CQ-6222-01 9 84606763 84606763 G T SPATA31D1 Missense_Mutation p.V460F 0.13 tolerated(0.16) benign(0.142) TCGA-CQ-6222-01 9 95004546 95004546 T A IARS Missense_Mutation p.N1023Y 0.17 deleterious(0.05) benign(0.002) TCGA-CQ-6223-01 10 104229810 104229810 C A TMEM180 Missense_Mutation p.Q77K 0.51 tolerated(1) benign(0.001) TCGA-CQ-6223-01 10 50594749 50594749 C G DRGX Missense_Mutation p.K135N 0.37 tolerated(0.16) benign(0.424) TCGA-CQ-6223-01 10 70138405 70138405 T C RUFY2 Intron 0.28 TCGA-CQ-6223-01 10 72358804 72358804 G A PRF1 Missense_Mutation p.R225W 0.29 deleterious(0.01) benign(0.086) TCGA-CQ-6223-01 11 107975155 107975155 G C CUL5 3'UTR 0.12 TCGA-CQ-6223-01 11 119029297 119029297 G A ABCG4 Missense_Mutation p.V400M 0.28 deleterious(0) benign(0.311) TCGA-CQ-6223-01 11 119169109 119169109 G A CBL Missense_Mutation p.E765K 0.18 deleterious_low_confidence(0.01) benign(0.234) TCGA-CQ-6223-01 11 123813951 123813951 C A OR6T1 Missense_Mutation p.A199S 0.33 tolerated(0.7) benign(0.012) TCGA-CQ-6223-01 11 123993788 123993788 C T VWA5A Silent p.S294S 0.23 TCGA-CQ-6223-01 11 621590 621590 A C CDHR5 Missense_Mutation p.L160R 0.26 deleterious(0) probably_damaging(0.991) TCGA-CQ-6223-01 11 68562283 68562283 C T CPT1A Missense_Mutation p.E290K 0.33 tolerated(0.06) benign(0.024) TCGA-CQ-6223-01 12 109634899 109634899 G A ACACB Silent p.G856G 0.37 TCGA-CQ-6223-01 12 33559823 33559823 T C SYT10 Silent p.R326R 0.38 TCGA-CQ-6223-01 12 46326990 46326990 T C SCAF11 Missense_Mutation p.I220V 0.20 tolerated(0.33) benign(0.257) TCGA-CQ-6223-01 12 48543326 48543326 C T ASB8 Silent p.V230V 0.31 TCGA-CQ-6223-01 13 39265021 39265021 C T FREM2 Silent p.P1180P 0.39 TCGA-CQ-6223-01 13 61986231 61986231 G A PCDH20 Silent p.D667D 0.36 TCGA-CQ-6223-01 13 70456525 70456525 C A KLHL1 Nonsense_Mutation p.E373* 0.15 TCGA-CQ-6223-01 14 104206647 104206647 G C PPP1R13B Silent p.P702P 0.30 TCGA-CQ-6223-01 14 21500154 21500154 C A TPPP2 Missense_Mutation p.A144E 0.30 tolerated(0.23) benign(0.111) TCGA-CQ-6223-01 14 57741500 57741500 G A AP5M1 Missense_Mutation p.G205R 0.24 deleterious(0) probably_damaging(0.999) TCGA-CQ-6223-01 14 92470836 92470836 A C TRIP11 Missense_Mutation p.L1162V 0.47 deleterious(0) probably_damaging(0.998) TCGA-CQ-6223-01 15 28483835 28483835 C T HERC2 Missense_Mutation p.D1221N 0.37 benign(0.212) TCGA-CQ-6223-01 15 42150939 42150939 G A SPTBN5 Missense_Mutation p.A2696V 0.46 benign(0.024) TCGA-CQ-6223-01 15 42437772 42437772 C A PLA2G4F Splice_Site p.X594_splice 0.14 TCGA-CQ-6223-01 15 79317766 79317766 G A RASGRF1 Missense_Mutation p.R478C 0.38 deleterious(0) probably_damaging(0.993) TCGA-CQ-6223-01 15 89169644 89169644 C T AEN Silent p.F68F 0.26 TCGA-CQ-6223-01 15 93563349 93563349 G T CHD2 Missense_Mutation p.D1672Y 0.32 deleterious_low_confidence(0.04) benign(0.272) TCGA-CQ-6223-01 16 50667423 50667423 G A NKD1 Missense_Mutation p.A382T 0.32 tolerated(0.19) benign(0.027) TCGA-CQ-6223-01 16 58202514 58202514 C T CSNK2A2 Silent p.K171K 0.47 TCGA-CQ-6223-01 16 81301576 81301576 G A BCMO1 Missense_Mutation p.R228H 0.35 tolerated(0.15) benign(0.013) TCGA-CQ-6223-01 16 88643837 88643837 C T ZC3H18 Silent p.D102D 0.41 TCGA-CQ-6223-01 17 39521652 39521652 C T KRT33B Missense_Mutation p.A248T 0.14 tolerated(0.67) benign(0.001) TCGA-CQ-6223-01 17 71395327 71395327 G A SDK2 Missense_Mutation p.R1025C 0.38 deleterious(0.01) benign(0.381) TCGA-CQ-6223-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.47 deleterious(0) possibly_damaging(0.9) TCGA-CQ-6223-01 18 20555133 20555133 C G RBBP8 Missense_Mutation p.L127V 0.30 deleterious(0.02) probably_damaging(0.995) TCGA-CQ-6223-01 19 10225151 10225152 AT - PPAN-P2RY11 Frame_Shift_Del p.I708Sfs*75 0.39 TCGA-CQ-6223-01 19 18329002 18329002 G A PDE4C Silent p.D429D 0.31 TCGA-CQ-6223-01 19 36217142 36217142 T C KMT2B Silent p.C1297C 0.13 TCGA-CQ-6223-01 19 37382576 37382576 T C ZNF829 Missense_Mutation p.I454V 0.30 tolerated(0.12) probably_damaging(0.927) TCGA-CQ-6223-01 19 42224848 42224848 C A CEACAM5 Missense_Mutation p.P593Q 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-CQ-6223-01 19 50958379 50958379 C T MYBPC2 Missense_Mutation p.R677W 0.28 deleterious(0) probably_damaging(0.999) TCGA-CQ-6223-01 19 55824407 55824407 G T TMEM150B Silent p.A174A 0.47 TCGA-CQ-6223-01 19 55824419 55824419 G A TMEM150B Silent p.I170I 0.46 TCGA-CQ-6223-01 19 57175695 57175695 G A ZNF835 Missense_Mutation p.A291V 0.40 tolerated(0.07) benign(0.062) TCGA-CQ-6223-01 19 57640091 57640091 G T USP29 Missense_Mutation p.K16N 0.30 tolerated(0.37) benign(0) TCGA-CQ-6223-01 1 150485926 150485926 G C ECM1 Missense_Mutation p.E563Q 0.07 tolerated_low_confidence(0.06) benign(0.05) TCGA-CQ-6223-01 1 155152365 155152365 G A TRIM46 Missense_Mutation p.G515S 0.25 tolerated(0.85) probably_damaging(1) TCGA-CQ-6223-01 1 181767596 181767596 G A CACNA1E Missense_Mutation p.E2190K 0.32 tolerated(0.65) benign(0.401) TCGA-CQ-6223-01 1 214171226 214171226 C A PROX1 Missense_Mutation p.Q450K 0.30 tolerated(0.56) benign(0.085) TCGA-CQ-6223-01 1 228437860 228437860 C T OBSCN Nonsense_Mutation p.Q1502* 0.30 TCGA-CQ-6223-01 1 243333053 243333053 C T CEP170 Missense_Mutation p.G574S 0.23 tolerated(0.52) benign(0.003) TCGA-CQ-6223-01 1 247588449 247588449 C T NLRP3 Silent p.F568F 0.31 TCGA-CQ-6223-01 1 32154663 32154663 G T COL16A1 Silent p.I548I 0.32 TCGA-CQ-6223-01 1 62293185 62293185 G A INADL Missense_Mutation p.R637Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-CQ-6223-01 1 62672650 62672650 G A L1TD1 Missense_Mutation p.G117E 0.18 tolerated(1) unknown(0) TCGA-CQ-6223-01 1 63879798 63879798 C A ALG6 Missense_Mutation p.H295N 0.28 tolerated(0.37) benign(0.006) TCGA-CQ-6223-01 20 18433269 18433269 C T DZANK1 Missense_Mutation p.R178H 0.36 tolerated(1) benign(0.004) TCGA-CQ-6223-01 20 48523004 48523004 C T SPATA2 Missense_Mutation p.A239T 0.31 tolerated(0.14) probably_damaging(0.98) TCGA-CQ-6223-01 22 16449741 16449741 C A OR11H1 Missense_Mutation p.A22S 0.27 tolerated(1) benign(0.002) TCGA-CQ-6223-01 2 10104143 10104143 G A GRHL1 Missense_Mutation p.G292E 0.13 tolerated(0.4) benign(0.401) TCGA-CQ-6223-01 2 119988594 119988594 G A STEAP3 Silent p.S2S 0.31 TCGA-CQ-6223-01 2 166904235 166904235 G T SCN1A Missense_Mutation p.P358T 0.27 deleterious(0) probably_damaging(1) TCGA-CQ-6223-01 2 167298060 167298060 C A SCN7A Missense_Mutation p.R668L 0.26 deleterious(0) probably_damaging(0.965) TCGA-CQ-6223-01 2 179474008 179474008 G C TTN Missense_Mutation p.D17343E 0.32 TCGA-CQ-6223-01 2 192922424 192922424 C T TMEFF2 Missense_Mutation p.E173K 0.36 deleterious(0.02) benign(0.174) TCGA-CQ-6223-01 2 216240367 216240367 T G FN1 Missense_Mutation p.I1988L 0.36 tolerated(1) benign(0.068) TCGA-CQ-6223-01 2 25469959 25469959 C T DNMT3A Silent p.K361K 0.36 TCGA-CQ-6223-01 2 27430151 27430151 C T SLC5A6 Missense_Mutation p.R123H 0.32 deleterious(0) probably_damaging(0.996) TCGA-CQ-6223-01 3 128993713 128993713 C T COPG1 Silent p.H763H 0.53 TCGA-CQ-6223-01 3 130292872 130292872 A C COL6A6 Missense_Mutation p.K1017T 0.18 tolerated(0.59) benign(0.006) TCGA-CQ-6223-01 3 195594350 195594350 G C TNK2 Missense_Mutation p.T1003S 0.54 tolerated_low_confidence(0.74) benign(0.011) TCGA-CQ-6223-01 3 98002593 98002593 C G OR5H2 Missense_Mutation p.P288A 0.18 deleterious(0) probably_damaging(1) TCGA-CQ-6223-01 4 187584693 187584693 G A FAT1 Nonsense_Mutation p.Q1114* 0.33 TCGA-CQ-6223-01 4 41699182 41699182 G T LIMCH1 Missense_Mutation p.G1078W 0.23 deleterious(0) probably_damaging(0.915) TCGA-CQ-6223-01 4 66361109 66361109 T C EPHA5 Missense_Mutation p.T355A 0.40 deleterious(0.01) benign(0.049) TCGA-CQ-6223-01 4 80993706 80993706 C T ANTXR2 Silent p.A3A 0.50 TCGA-CQ-6223-01 4 96141216 96141216 C T UNC5C Missense_Mutation p.R407H 0.31 tolerated(0.09) benign(0.189) TCGA-CQ-6223-01 5 135513140 135513140 C T SMAD5 Missense_Mutation p.P456L 0.29 deleterious(0) probably_damaging(0.993) TCGA-CQ-6223-01 5 140784241 140784241 T C PCDHGA9 Silent p.G574G 0.26 TCGA-CQ-6223-01 5 148899953 148899953 T C CSNK1A1 Splice_Site p.X120_splice 0.41 TCGA-CQ-6223-01 5 153789255 153789255 C T GALNT10 Missense_Mutation p.T440M 0.29 tolerated(0.05) benign(0.161) TCGA-CQ-6223-01 5 169474561 169474561 C A DOCK2 Silent p.P1338P 0.16 TCGA-CQ-6223-01 5 171809084 171809084 C A SH3PXD2B Silent p.L119L 0.37 TCGA-CQ-6223-01 5 57913562 57913562 C A RAB3C Missense_Mutation p.S39R 0.21 deleterious(0) probably_damaging(0.995) TCGA-CQ-6223-01 5 94027884 94027884 T C ANKRD32 Missense_Mutation p.V873A 0.26 deleterious(0) probably_damaging(0.999) TCGA-CQ-6223-01 6 111583600 111583600 C A KIAA1919 Silent p.V56V 0.30 TCGA-CQ-6223-01 6 30029436 30029436 C A ZNRD1 Silent p.I45I 0.17 TCGA-CQ-6223-01 6 31636415 31636415 G A CSNK2B-LY6G5B-1181 Missense_Mutation p.R92H 0.38 deleterious(0.03) benign(0.047) TCGA-CQ-6223-01 6 7229324 7229324 T G RREB1 Missense_Mutation p.L331R 0.44 deleterious(0) probably_damaging(1) TCGA-CQ-6223-01 7 100777046 100777047 - A SERPINE1 Frame_Shift_Ins p.M258Nfs*8 0.22 TCGA-CQ-6223-01 7 127235813 127235813 G C FSCN3 Missense_Mutation p.L199F 0.25 deleterious(0.01) possibly_damaging(0.851) TCGA-CQ-6223-01 7 134853603 134853603 C G C7orf49 Missense_Mutation p.K24N 0.17 deleterious(0) possibly_damaging(0.525) TCGA-CQ-6223-01 7 29035468 29035468 G A CPVL Missense_Mutation p.P451S 0.41 deleterious(0) probably_damaging(1) TCGA-CQ-6223-01 7 6426850 6426850 G A RAC1 Missense_Mutation p.G15S 0.24 deleterious(0) probably_damaging(0.997) TCGA-CQ-6223-01 7 97821070 97821070 G A LMTK2 Silent p.P431P 0.25 TCGA-CQ-6223-01 8 144358450 144358450 C T GLI4 Missense_Mutation p.R203C 0.29 deleterious(0) probably_damaging(0.991) TCGA-CQ-6223-01 8 38283759 38283759 C T FGFR1 Missense_Mutation p.R240H 0.25 deleterious(0) probably_damaging(0.939) TCGA-CQ-6223-01 8 39624564 39624564 T C ADAM2 Splice_Site p.X438_splice 0.33 TCGA-CQ-6223-01 8 53055565 53055565 T A ST18 Missense_Mutation p.K698M 0.28 deleterious(0) probably_damaging(0.997) TCGA-CQ-6223-01 9 12775787 12775787 G T LURAP1L Missense_Mutation p.V25L 0.23 tolerated(1) benign(0.007) TCGA-CQ-6223-01 9 139750831 139750831 C T MAMDC4 Intron 0.30 TCGA-CQ-6223-01 X 129479183 129479183 G T SLC25A14 Nonsense_Mutation p.E35* 0.62 TCGA-CQ-6223-01 X 137715118 137715118 C T FGF13 Missense_Mutation p.D221N 0.73 tolerated(0.05) benign(0.042) TCGA-CQ-6223-01 X 16168686 16168686 G A GRPR Silent p.S224S 0.09 TCGA-CQ-6223-01 X 3228388 3228388 C A MXRA5 Missense_Mutation p.R2619L 0.77 deleterious(0) benign(0.434) TCGA-CQ-6224-01 10 100148126 100148126 C T PYROXD2 Missense_Mutation p.A478T 0.22 tolerated(0.2) benign(0.008) TCGA-CQ-6224-01 10 124339094 124339094 G T DMBT1 Missense_Mutation p.G227V 0.09 tolerated(0.06) probably_damaging(0.99) TCGA-CQ-6224-01 10 38654375 38654375 A G HSD17B7P2 RNA 0.14 TCGA-CQ-6224-01 10 71921643 71921643 T C SAR1A Missense_Mutation p.N10S 0.11 tolerated(0.61) benign(0.001) TCGA-CQ-6224-01 10 94818062 94818062 G A EXOC6 Missense_Mutation p.V789I 0.14 tolerated(0.22) benign(0.117) TCGA-CQ-6224-01 11 130078332 130078332 C T ST14 Silent p.A674A 0.22 TCGA-CQ-6224-01 11 1619077 1619077 G C KRTAP5-2 Missense_Mutation p.S135C 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-CQ-6224-01 11 20177857 20177857 G A DBX1 Missense_Mutation p.S351L 0.13 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-CQ-6224-01 11 33308667 33308667 G A HIPK3 Missense_Mutation p.R236H 0.08 deleterious(0) probably_damaging(0.998) TCGA-CQ-6224-01 11 46894742 46894742 G A LRP4 Missense_Mutation p.R1498W 0.10 deleterious(0) probably_damaging(1) TCGA-CQ-6224-01 11 68658835 68658835 C T MRPL21 Silent p.R194R 0.05 TCGA-CQ-6224-01 11 77991788 77991788 C G GAB2 Missense_Mutation p.E79Q 0.12 deleterious(0.05) possibly_damaging(0.817) TCGA-CQ-6224-01 12 104089380 104089380 G C STAB2 Missense_Mutation p.R1143P 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-6224-01 12 53447568 53447568 C A TENC1 Missense_Mutation p.T101K 0.21 deleterious(0.04) possibly_damaging(0.838) TCGA-CQ-6224-01 12 53448217 53448217 A - TENC1 Frame_Shift_Del p.K182Sfs*14 0.12 TCGA-CQ-6224-01 12 6690661 6690661 G C CHD4 Intron 0.08 TCGA-CQ-6224-01 13 26343230 26343230 C T ATP8A2 Missense_Mutation p.R811W 0.26 deleterious(0.03) possibly_damaging(0.764) TCGA-CQ-6224-01 13 37011811 37011811 C G CCNA1 Missense_Mutation p.P115A 0.07 tolerated(0.15) possibly_damaging(0.493) TCGA-CQ-6224-01 14 69787431 69787431 A T GALNT16 Missense_Mutation p.T61S 0.07 tolerated(0.41) benign(0.017) TCGA-CQ-6224-01 14 70842394 70842394 C T SYNJ2BP Missense_Mutation p.R99K 0.16 tolerated(0.29) benign(0.015) TCGA-CQ-6224-01 14 92258736 92258736 T A TC2N Missense_Mutation p.D341V 0.23 deleterious(0.02) benign(0.342) TCGA-CQ-6224-01 14 93397703 93397703 C A CHGA Missense_Mutation p.P155Q 0.07 deleterious(0.05) benign(0.201) TCGA-CQ-6224-01 15 40293317 40293317 C A EIF2AK4 Missense_Mutation p.H1017Q 0.13 deleterious(0.01) benign(0.042) TCGA-CQ-6224-01 16 54966559 54966559 C T IRX5 Silent p.N133N 0.16 TCGA-CQ-6224-01 16 67700077 67700077 G A ENKD1 Silent p.I59I 0.08 TCGA-CQ-6224-01 16 88601287 88601287 G C ZFPM1 Missense_Mutation p.R974P 0.16 deleterious(0) possibly_damaging(0.767) TCGA-CQ-6224-01 17 40322231 40322231 C T KCNH4 Silent p.A428A 0.33 TCGA-CQ-6224-01 17 56232955 56232955 C T OR4D1 Silent p.A147A 0.25 TCGA-CQ-6224-01 17 61829244 61829244 C A CCDC47 Intron 0.27 TCGA-CQ-6224-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.19 deleterious(0) probably_damaging(1) TCGA-CQ-6224-01 17 79866789 79866789 G A PCYT2 Silent p.T101T 0.10 TCGA-CQ-6224-01 18 44561118 44561118 G A TCEB3B Missense_Mutation p.T173M 0.09 tolerated(0.24) benign(0.012) TCGA-CQ-6224-01 19 10404565 10404565 G A ICAM5 Missense_Mutation p.E553K 0.20 tolerated(0.11) benign(0.021) TCGA-CQ-6224-01 19 14070879 14070879 C T DCAF15 Silent p.L508L 0.13 TCGA-CQ-6224-01 19 14517888 14517888 G A CD97 Silent p.T741T 0.12 TCGA-CQ-6224-01 19 17973780 17973780 A G RPL18A Missense_Mutation p.K128E 0.11 deleterious(0.01) benign(0.435) TCGA-CQ-6224-01 19 50357788 50357788 C T PTOV1 Silent p.L99L 0.07 TCGA-CQ-6224-01 19 55889198 55889198 G A TMEM190 Silent p.A83A 0.07 TCGA-CQ-6224-01 19 58049987 58049987 A G ZNF549 Missense_Mutation p.S539G 0.07 tolerated(0.09) benign(0.077) TCGA-CQ-6224-01 1 157551405 157551405 C T FCRL4 Missense_Mutation p.A389T 0.19 tolerated(0.3) benign(0.008) TCGA-CQ-6224-01 1 186106021 186106021 C T HMCN1 Nonsense_Mutation p.R4512* 0.28 TCGA-CQ-6224-01 1 224377307 224377307 G A DEGS1 Missense_Mutation p.M37I 0.16 deleterious(0.01) benign(0.445) TCGA-CQ-6224-01 1 228468013 228468013 C T OBSCN Silent p.N3028N 0.16 TCGA-CQ-6224-01 1 37346378 37346378 C T GRIK3 Missense_Mutation p.R136H 0.04 tolerated(0.1) benign(0.056) TCGA-CQ-6224-01 1 45271807 45271807 C T TCTEX1D4 Silent p.P178P 0.46 TCGA-CQ-6224-01 20 34022565 34022565 C T GDF5 Silent p.V216V 0.20 TCGA-CQ-6224-01 22 29838175 29838175 C T RFPL1 3'UTR 0.19 TCGA-CQ-6224-01 2 118854049 118854049 C G INSIG2 5'UTR 0.29 TCGA-CQ-6224-01 2 179433038 179433038 C T TTN Missense_Mutation p.V25941I 0.24 TCGA-CQ-6224-01 2 179587178 179587178 C A TTN Missense_Mutation p.A7446S 0.16 TCGA-CQ-6224-01 2 182542610 182542610 G A NEUROD1 Silent p.C326C 0.09 TCGA-CQ-6224-01 2 214878680 214878680 G A SPAG16 Missense_Mutation p.R469K 0.13 tolerated(0.28) benign(0.441) TCGA-CQ-6224-01 2 234669125 234669125 C T UGT1A8 Intron 0.11 TCGA-CQ-6224-01 2 36986255 36986255 G A VIT Intron 0.06 TCGA-CQ-6224-01 2 56420192 56420192 G T CCDC85A Missense_Mutation p.C286F 0.15 tolerated_low_confidence(0.16) benign(0.282) TCGA-CQ-6224-01 3 170198808 170198808 C T SLC7A14 Silent p.L421L 0.12 TCGA-CQ-6224-01 3 25639860 25639860 C T TOP2B Missense_Mutation p.V1602I 0.18 tolerated_low_confidence(0.79) benign(0.138) TCGA-CQ-6224-01 4 106621141 106621141 C T INTS12 Missense_Mutation p.E8K 0.29 deleterious(0) probably_damaging(0.954) TCGA-CQ-6224-01 5 139201499 139201499 G A PSD2 Silent p.P373P 0.10 TCGA-CQ-6224-01 5 148590346 148590346 G A ABLIM3 Silent p.E211E 0.27 TCGA-CQ-6224-01 5 86674234 86674234 G A RASA1 Missense_Mutation p.R789Q 0.26 deleterious(0.02) probably_damaging(0.949) TCGA-CQ-6224-01 5 90079036 90079036 G A GPR98 Missense_Mutation p.A4443T 0.19 probably_damaging(0.945) TCGA-CQ-6224-01 6 111588141 111588141 C T KIAA1919 Missense_Mutation p.T459M 0.09 tolerated(1) benign(0.001) TCGA-CQ-6224-01 6 16328463 16328463 C T ATXN1 Missense_Mutation p.E27K 0.07 deleterious(0.04) benign(0.124) TCGA-CQ-6224-01 6 22294767 22294767 G A PRL Silent p.S25S 0.13 TCGA-CQ-6224-01 6 24357907 24357907 G A KAAG1 Missense_Mutation p.V14I 0.13 tolerated_low_confidence(0.35) possibly_damaging(0.636) TCGA-CQ-6224-01 6 51875151 51875151 C T PKHD1 Missense_Mutation p.V1903I 0.14 deleterious(0.02) benign(0.048) TCGA-CQ-6224-01 7 104377219 104377219 T C LHFPL3 Silent p.L181L 0.21 TCGA-CQ-6224-01 7 110764283 110764283 C T LRRN3 Silent p.G485G 0.10 TCGA-CQ-6224-01 7 151949691 151949691 C T KMT2C Missense_Mutation p.C470Y 0.16 probably_damaging(0.999) TCGA-CQ-6224-01 7 37988474 37988474 G C EPDR1 Missense_Mutation p.G101A 0.07 tolerated(0.23) benign(0.219) TCGA-CQ-6224-01 7 57522286 57522286 T C ZNF716 Missense_Mutation p.S54P 0.05 deleterious(0) possibly_damaging(0.836) TCGA-CQ-6224-01 8 144392336 144392336 C T TOP1MT Silent p.A535A 0.15 TCGA-CQ-6224-01 8 145584283 145584283 G A SLC52A2 Silent p.L345L 0.17 TCGA-CQ-6224-01 8 28573798 28573798 C T EXTL3 Silent p.C74C 0.17 TCGA-CQ-6224-01 8 54141973 54141973 C T OPRK1 Missense_Mutation p.D343N 0.09 tolerated(0.58) probably_damaging(0.94) TCGA-CQ-6224-01 9 119903652 119903652 A G ASTN2 Intron 0.06 TCGA-CQ-6224-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.21 TCGA-CQ-6224-01 9 73002724 73002724 G A KLF9 Nonsense_Mutation p.R235* 0.16 TCGA-CQ-6224-01 9 96863938 96863938 G A PTPDC1 Missense_Mutation p.E700K 0.14 deleterious(0) probably_damaging(0.967) TCGA-CQ-6224-01 X 41077799 41077799 G A USP9X Silent p.L2128L 0.47 TCGA-CQ-6224-01 X 48887378 48887378 G A TFE3 3'UTR 0.42 TCGA-CQ-6224-01 X 70776891 70776891 C T OGT Missense_Mutation p.T419M 0.15 tolerated(0.09) possibly_damaging(0.908) TCGA-CQ-6224-01 X 76937546 76937546 T C ATRX Missense_Mutation p.T1068A 0.17 benign(0.005) TCGA-CQ-6225-01 10 117001476 117001476 C T ATRNL1 Missense_Mutation p.A550V 0.90 deleterious(0.01) probably_damaging(1) TCGA-CQ-6225-01 10 131565232 131565232 T G MGMT Missense_Mutation p.S230A 0.21 tolerated_low_confidence(0.43) unknown(0) TCGA-CQ-6225-01 10 73405728 73405728 C T CDH23 Silent p.Y19Y 0.90 TCGA-CQ-6225-01 10 75435138 75435138 G A AGAP5 Missense_Mutation p.T427M 0.78 tolerated(0.06) benign(0.104) TCGA-CQ-6225-01 10 98469638 98469638 C T PIK3AP1 Missense_Mutation p.S39N 0.54 tolerated(0.28) benign(0.002) TCGA-CQ-6225-01 11 102479679 102479679 T G MMP20 Missense_Mutation p.Q267P 0.24 deleterious(0) probably_damaging(1) TCGA-CQ-6225-01 11 113712437 113712437 A G USP28 Silent p.L108L 0.52 TCGA-CQ-6225-01 11 119027587 119027587 G C ABCG4 Missense_Mutation p.E311Q 0.17 deleterious(0) possibly_damaging(0.883) TCGA-CQ-6225-01 11 121016697 121016697 A G TECTA Missense_Mutation p.N1326S 0.41 tolerated(0.55) benign(0.071) TCGA-CQ-6225-01 11 6048216 6048216 G A OR56A1 Missense_Mutation p.A240V 0.55 deleterious(0.02) probably_damaging(0.996) TCGA-CQ-6225-01 12 105238389 105238389 T A SLC41A2 Missense_Mutation p.N466I 0.06 deleterious(0) possibly_damaging(0.83) TCGA-CQ-6225-01 12 113810606 113810606 G C PLBD2 Missense_Mutation p.W179C 0.55 deleterious(0) probably_damaging(1) TCGA-CQ-6225-01 12 125397972 125397972 G A UBC Nonsense_Mutation p.Q116* 0.23 TCGA-CQ-6225-01 12 21325613 21325613 T C SLCO1B1 Silent p.F38F 0.15 TCGA-CQ-6225-01 12 31820646 31820646 C T METTL20 Nonsense_Mutation p.Q171* 0.55 TCGA-CQ-6225-01 12 42858530 42858530 C G PRICKLE1 Missense_Mutation p.D436H 0.32 deleterious(0.02) benign(0.012) TCGA-CQ-6225-01 12 49425072 49425073 CA - KMT2D Frame_Shift_Del p.V4472Afs*14 0.26 TCGA-CQ-6225-01 12 49448535 49448535 C T KMT2D Splice_Site p.X59_splice 0.60 TCGA-CQ-6225-01 12 55846799 55846802 ATAA - OR6C2 Frame_Shift_Del p.N269Kfs*14 0.61 TCGA-CQ-6225-01 12 6659050 6659050 G T IFFO1 Missense_Mutation p.L315M 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-CQ-6225-01 12 67699816 67699816 C G CAND1 Missense_Mutation p.L790V 0.53 tolerated(0.53) benign(0.002) TCGA-CQ-6225-01 12 80771649 80771649 G A OTOGL Missense_Mutation p.G2286S 0.61 deleterious(0) probably_damaging(1) TCGA-CQ-6225-01 12 81532986 81532986 C T ACSS3 Missense_Mutation p.A241V 0.62 deleterious(0) probably_damaging(0.997) TCGA-CQ-6225-01 14 100182184 100182184 G A CYP46A1 Missense_Mutation p.R244Q 0.41 tolerated(0.26) benign(0.046) TCGA-CQ-6225-01 14 106791020 106791020 C G IGHV3-30 Silent p.V112V 0.08 TCGA-CQ-6225-01 14 55878478 55878478 C A ATG14 Silent p.P21P 0.47 TCGA-CQ-6225-01 14 78325478 78325478 C A ADCK1 Missense_Mutation p.F93L 0.50 deleterious(0.01) probably_damaging(0.938) TCGA-CQ-6225-01 14 89082514 89082514 C T EML5 Missense_Mutation p.V1957I 0.38 tolerated(0.1) benign(0.011) TCGA-CQ-6225-01 14 93649974 93649974 C A MOAP1 Missense_Mutation p.R205L 0.25 deleterious(0) probably_damaging(0.958) TCGA-CQ-6225-01 14 95999779 95999779 T C GLRX5 5'Flank 0.44 TCGA-CQ-6225-01 15 28413737 28413737 C G HERC2 Splice_Site p.X3410_splice 0.44 TCGA-CQ-6225-01 15 48500015 48500015 T C SLC12A1 Silent p.S33S 0.42 TCGA-CQ-6225-01 15 51809333 51809333 C T DMXL2 Missense_Mutation p.S823N 0.03 deleterious(0) probably_damaging(0.998) TCGA-CQ-6225-01 15 54305278 54305278 A T UNC13C Nonsense_Mutation p.K60* 0.40 TCGA-CQ-6225-01 15 56386608 56386608 A C RFX7 Silent p.S1106S 0.29 TCGA-CQ-6225-01 15 71125421 71125421 G T LARP6 Missense_Mutation p.A149E 0.34 deleterious(0.04) probably_damaging(0.944) TCGA-CQ-6225-01 15 72968471 72968471 T A HIGD2B Missense_Mutation p.Q82L 0.50 deleterious(0) benign(0.082) TCGA-CQ-6225-01 16 1822093 1822093 G C MRPS34 3'UTR 0.41 TCGA-CQ-6225-01 16 23382771 23382771 C T SCNN1B Silent p.I344I 0.29 TCGA-CQ-6225-01 16 24990293 24990293 T C ARHGAP17 Silent p.L29L 0.43 TCGA-CQ-6225-01 16 30006861 30006861 C T HIRIP3 Splice_Site p.X22_splice 0.28 TCGA-CQ-6225-01 16 457468 457471 CTCT - DECR2 Frame_Shift_Del p.S84Wfs*17 0.24 TCGA-CQ-6225-01 16 57290897 57290897 G A PLLP Silent p.F159F 0.53 TCGA-CQ-6225-01 16 57509863 57509863 G A DOK4 Missense_Mutation p.R25W 0.50 deleterious(0) probably_damaging(0.916) TCGA-CQ-6225-01 16 69967032 69967032 C T WWP2 Intron 0.53 TCGA-CQ-6225-01 17 39221667 39221667 G C KRTAP2-4 3'UTR 0.83 TCGA-CQ-6225-01 17 39504890 39504890 A G KRT33A Missense_Mutation p.Y145H 0.79 tolerated(0.05) possibly_damaging(0.588) TCGA-CQ-6225-01 17 43481446 43481446 T - ARHGAP27 Frame_Shift_Del p.K158Rfs*34 0.12 TCGA-CQ-6225-01 17 48453432 48453432 T G EME1 Missense_Mutation p.L261V 0.06 deleterious(0) probably_damaging(0.996) TCGA-CQ-6225-01 17 49074037 49074037 G T SPAG9 Silent p.A619A 0.37 TCGA-CQ-6225-01 17 53111543 53111543 G A STXBP4 Missense_Mutation p.A260T 0.42 tolerated(0.16) benign(0.21) TCGA-CQ-6225-01 17 7578403 7578403 C G TP53 Missense_Mutation p.C176S 0.76 deleterious(0) benign(0.377) TCGA-CQ-6225-01 17 76212844 76212844 A G BIRC5 Silent p.E130E 0.36 TCGA-CQ-6225-01 17 8172074 8172074 C T PFAS Silent p.Y1202Y 0.89 TCGA-CQ-6225-01 18 12986890 12986890 G A SEH1L Missense_Mutation p.R367Q 0.46 tolerated_low_confidence(0.15) benign(0.301) TCGA-CQ-6225-01 18 13737130 13737130 T A RNMT Nonsense_Mutation p.C225* 0.50 TCGA-CQ-6225-01 18 8633275 8633277 AAG - RAB12 In_Frame_Del p.K127del 0.19 TCGA-CQ-6225-01 19 13411468 13411468 G A CACNA1A Silent p.D725D 0.07 TCGA-CQ-6225-01 19 30936464 30936464 C T ZNF536 Silent p.H665H 0.18 TCGA-CQ-6225-01 19 34833300 34833300 C T KIAA0355 Missense_Mutation p.R821C 0.42 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CQ-6225-01 19 35719283 35719283 G T FAM187B Missense_Mutation p.R101S 0.40 tolerated(0.64) benign(0.026) TCGA-CQ-6225-01 19 37118397 37118397 C G ZNF382 Nonsense_Mutation p.S533* 0.38 TCGA-CQ-6225-01 19 42719365 42719374 GAAGAGCTGG - DEDD2 Frame_Shift_Del p.S120* 0.11 TCGA-CQ-6225-01 19 44933285 44933285 G T ZNF229 Silent p.S557S 0.61 TCGA-CQ-6225-01 19 50310323 50310323 T C FUZ 3'UTR 0.47 TCGA-CQ-6225-01 19 50310325 50310325 C A FUZ 3'UTR 0.47 TCGA-CQ-6225-01 19 50906794 50906794 C G POLD1 Silent p.T394T 0.39 TCGA-CQ-6225-01 19 51322438 51322438 A C KLK1 3'UTR 0.05 TCGA-CQ-6225-01 19 53854072 53854072 T A ZNF845 Missense_Mutation p.D48E 0.11 tolerated(0.14) possibly_damaging(0.788) TCGA-CQ-6225-01 19 54656721 54656721 C G CNOT3 Missense_Mutation p.I674M 0.24 deleterious(0.02) benign(0.031) TCGA-CQ-6225-01 1 118497948 118497948 A T WDR3 Missense_Mutation p.Y807F 0.89 tolerated(0.58) benign(0.26) TCGA-CQ-6225-01 1 119619197 119619197 G T WARS2 Missense_Mutation p.Q42K 0.79 deleterious(0) probably_damaging(0.999) TCGA-CQ-6225-01 1 156233237 156233237 G C SMG5 Silent p.V660V 0.44 TCGA-CQ-6225-01 1 156785616 156785616 C T SH2D2A Intron 0.33 TCGA-CQ-6225-01 1 161049448 161049448 T C PVRL4 Missense_Mutation p.E124G 0.32 tolerated(0.33) benign(0.158) TCGA-CQ-6225-01 1 16375690 16375690 C T CLCNKB Missense_Mutation p.T244I 0.78 deleterious(0.01) benign(0.314) TCGA-CQ-6225-01 1 200956237 200956237 G A KIF21B Silent p.S1167S 0.05 TCGA-CQ-6225-01 1 203054717 203054717 C T MYOG Missense_Mutation p.A125T 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-CQ-6225-01 1 207697072 207697072 A T CR1 Nonsense_Mutation p.R202* 0.78 TCGA-CQ-6225-01 1 227174248 227174250 AGA - ADCK3 In_Frame_Del p.K586del 0.17 TCGA-CQ-6225-01 1 232650590 232650590 T C SIPA1L2 Missense_Mutation p.I166V 0.87 tolerated(0.1) probably_damaging(0.982) TCGA-CQ-6225-01 1 34285341 34285341 A C CSMD2 Missense_Mutation p.W393G 0.14 deleterious(0) probably_damaging(1) TCGA-CQ-6225-01 1 45293266 45293266 G A PTCH2 Silent p.L727L 0.81 TCGA-CQ-6225-01 1 67292683 67292683 A G WDR78 Missense_Mutation p.F720S 0.44 deleterious(0) probably_damaging(1) TCGA-CQ-6225-01 20 1559072 1559072 G C RP4-576H24.4 Silent p.A114A 0.17 TCGA-CQ-6225-01 20 30028525 30028525 G C DEFB123 Missense_Mutation p.L8F 0.39 deleterious(0.04) unknown(0) TCGA-CQ-6225-01 20 30584797 30584797 C T XKR7 Missense_Mutation p.A426V 0.47 tolerated(0.78) probably_damaging(1) TCGA-CQ-6225-01 20 31980046 31980046 T C CDK5RAP1 Missense_Mutation p.E149G 0.04 deleterious(0) probably_damaging(0.978) TCGA-CQ-6225-01 20 36012655 36012655 C T SRC Silent p.P33P 0.60 TCGA-CQ-6225-01 20 45003021 45003021 G A ELMO2 Missense_Mutation p.A410V 0.44 deleterious(0.01) benign(0.098) TCGA-CQ-6225-01 21 35208857 35208859 AGG - ITSN1 In_Frame_Del p.G1195del 0.73 TCGA-CQ-6225-01 22 37769111 37769111 G T ELFN2 3'UTR 0.26 TCGA-CQ-6225-01 22 38273678 38273678 C A EIF3L Intron 0.26 TCGA-CQ-6225-01 2 10908907 10908908 AA - ATP6V1C2 Frame_Shift_Del p.N148Pfs*19 0.37 TCGA-CQ-6225-01 2 119915824 119915824 C T C1QL2 Missense_Mutation p.A8T 0.20 tolerated_low_confidence(0.2) unknown(0) TCGA-CQ-6225-01 2 135596266 135596266 T - ACMSD Frame_Shift_Del p.I5Tfs*13 0.28 TCGA-CQ-6225-01 2 141359174 141359174 T A LRP1B Missense_Mutation p.R2278S 0.11 benign(0.227) TCGA-CQ-6225-01 2 152226607 152226607 A T TNFAIP6 Missense_Mutation p.E156D 0.47 tolerated(0.4) benign(0.001) TCGA-CQ-6225-01 2 158162305 158162305 T C GALNT5 Silent p.T828T 0.10 TCGA-CQ-6225-01 2 160619499 160619499 G A MARCH7 Missense_Mutation p.V668I 0.11 tolerated(0.06) benign(0.314) TCGA-CQ-6225-01 2 162280766 162280766 C A TBR1 3'UTR 0.56 TCGA-CQ-6225-01 2 162661031 162661031 G A SLC4A10 Missense_Mutation p.R68H 0.49 tolerated(1) benign(0.002) TCGA-CQ-6225-01 2 163280005 163280005 A T KCNH7 Silent p.I665I 0.47 TCGA-CQ-6225-01 2 166020350 166020350 C G SCN3A Intron 0.22 TCGA-CQ-6225-01 2 179587427 179587427 C G TTN Missense_Mutation p.S7400T 0.50 TCGA-CQ-6225-01 2 185800683 185800683 C A ZNF804A Missense_Mutation p.P187Q 0.41 deleterious(0.02) benign(0.265) TCGA-CQ-6225-01 2 185803540 185803540 C G ZNF804A Silent p.T1139T 0.38 TCGA-CQ-6225-01 2 209308082 209308082 T C PTH2R Silent p.H173H 0.71 TCGA-CQ-6225-01 2 36691694 36691694 G C CRIM1 Missense_Mutation p.G296A 0.37 tolerated(0.1) probably_damaging(0.991) TCGA-CQ-6225-01 2 37520323 37520323 G A PRKD3 Missense_Mutation p.S127L 0.26 deleterious(0.02) benign(0.031) TCGA-CQ-6225-01 2 50149151 50149151 C A NRXN1 Missense_Mutation p.E1525D 0.41 tolerated(0.59) benign(0.431) TCGA-CQ-6225-01 2 54891603 54891603 T G SPTBN1 Missense_Mutation p.V2145G 0.16 tolerated(0.41) benign(0.001) TCGA-CQ-6225-01 2 71780158 71780158 C G DYSF Silent p.R608R 0.07 TCGA-CQ-6225-01 2 89160754 89160754 C A IGKJ3 Missense_Mutation p.G7W 0.24 unknown(0) TCGA-CQ-6225-01 3 100093900 100093900 C T TOMM70A Missense_Mutation p.D397N 0.36 tolerated(0.06) probably_damaging(0.998) TCGA-CQ-6225-01 3 100170729 100170729 T C LNP1 Missense_Mutation p.I108T 0.67 tolerated(0.07) benign(0.081) TCGA-CQ-6225-01 3 142740399 142740399 T C U2SURP Splice_Site p.X284_splice 0.17 TCGA-CQ-6225-01 3 151597696 151597696 G A SUCNR1 Splice_Site p.X5_splice 0.30 TCGA-CQ-6225-01 3 158539427 158539427 C A MFSD1 Missense_Mutation p.A351E 0.09 deleterious(0) probably_damaging(0.959) TCGA-CQ-6225-01 3 178546115 178546115 A G KCNMB2 Missense_Mutation p.K126R 0.35 tolerated(0.31) benign(0.003) TCGA-CQ-6225-01 3 179615940 179615940 A C PEX5L Missense_Mutation p.M63R 0.06 deleterious_low_confidence(0) unknown(0) TCGA-CQ-6225-01 3 183756634 183756634 G C HTR3D Missense_Mutation p.E412D 0.27 tolerated(0.1) benign(0.38) TCGA-CQ-6225-01 4 39290414 39290414 G A RFC1 Silent p.P1138P 0.69 TCGA-CQ-6225-01 4 42524198 42524198 C G ATP8A1 Missense_Mutation p.E642D 0.88 tolerated(0.29) probably_damaging(0.992) TCGA-CQ-6225-01 4 47853112 47853112 C A NFXL1 Missense_Mutation p.Q854H 0.31 deleterious(0) possibly_damaging(0.886) TCGA-CQ-6225-01 4 57852522 57852522 A G POLR2B Missense_Mutation p.M8V 0.61 tolerated(0.56) unknown(0) TCGA-CQ-6225-01 4 65175550 65175550 C T TECRL Silent p.L217L 0.24 TCGA-CQ-6225-01 4 78792958 78792958 C T MRPL1 Missense_Mutation p.S31F 0.10 deleterious(0) possibly_damaging(0.526) TCGA-CQ-6225-01 4 85716037 85716037 C A WDFY3 Missense_Mutation p.G1088V 0.51 deleterious(0) probably_damaging(0.998) TCGA-CQ-6225-01 5 140215088 140215088 G A PCDHA7 Missense_Mutation p.V374M 0.82 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-CQ-6225-01 5 140264051 140264051 C T PCDHA13 Missense_Mutation p.A733V 0.88 tolerated_low_confidence(0.06) benign(0.001) TCGA-CQ-6225-01 5 140710805 140710805 G T PCDHGA1 Missense_Mutation p.G185V 0.88 tolerated_low_confidence(0.09) benign(0.158) TCGA-CQ-6225-01 5 148626086 148626086 G C ABLIM3 Missense_Mutation p.D510H 0.87 deleterious(0.04) benign(0.004) TCGA-CQ-6225-01 5 170395247 170395247 G A RANBP17 Missense_Mutation p.V526I 0.74 tolerated(0.06) benign(0.192) TCGA-CQ-6225-01 5 171583735 171583735 C T STK10 Missense_Mutation p.E72K 0.76 deleterious(0.02) possibly_damaging(0.875) TCGA-CQ-6225-01 5 177574774 177574774 C T RMND5B Silent p.F336F 0.80 TCGA-CQ-6225-01 5 23526667 23526667 A T PRDM9 Silent p.G490G 0.50 TCGA-CQ-6225-01 5 24488021 24488021 A T CDH10 Missense_Mutation p.D706E 0.52 tolerated(0.22) benign(0.038) TCGA-CQ-6225-01 5 2752514 2752514 C T C5orf38 Missense_Mutation p.H46Y 0.64 deleterious_low_confidence(0.03) benign(0.001) TCGA-CQ-6225-01 5 39127888 39127888 T C FYB Missense_Mutation p.D631G 0.41 deleterious(0.03) benign(0.014) TCGA-CQ-6225-01 6 109867278 109867279 AT - AK9 Frame_Shift_Del p.M1006Vfs*17 0.20 TCGA-CQ-6225-01 6 110301053 110301053 G A GPR6 Silent p.V246V 0.59 TCGA-CQ-6225-01 6 116443007 116443007 T G COL10A1 Missense_Mutation p.Q91P 0.11 tolerated(0.17) unknown(0) TCGA-CQ-6225-01 6 119295637 119295637 C A FAM184A Missense_Mutation p.K957N 0.27 deleterious(0) possibly_damaging(0.65) TCGA-CQ-6225-01 6 13977531 13977531 G T RNF182 Missense_Mutation p.V61F 0.07 tolerated(0.71) benign(0.051) TCGA-CQ-6225-01 6 146755396 146755396 C T GRM1 Missense_Mutation p.L1017F 0.36 tolerated_low_confidence(0.05) benign(0.396) TCGA-CQ-6225-01 6 26045748 26045748 A T HIST1H3C Missense_Mutation p.K37M 0.33 deleterious_low_confidence(0.01) benign(0.164) TCGA-CQ-6225-01 6 26246938 26246938 C T HIST1H4G Missense_Mutation p.V90M 0.22 deleterious(0) possibly_damaging(0.803) TCGA-CQ-6225-01 6 27925114 27925114 G C OR2B6 Missense_Mutation p.L32F 0.09 tolerated(0.05) benign(0.021) TCGA-CQ-6225-01 6 30692216 30692216 C T TUBB 3'UTR 0.62 TCGA-CQ-6225-01 6 38899605 38899605 G A DNAH8 Missense_Mutation p.E3548K 0.26 probably_damaging(1) TCGA-CQ-6225-01 6 44222449 44222451 CTT - SLC35B2 In_Frame_Del p.K431del 0.62 TCGA-CQ-6225-01 6 46658979 46658979 C T TDRD6 Silent p.T1038T 0.07 TCGA-CQ-6225-01 6 97676903 97676903 C G MMS22L Missense_Mutation p.E636Q 0.48 tolerated(0.11) probably_damaging(0.994) TCGA-CQ-6225-01 6 97694537 97694537 T C MMS22L Silent p.V383V 0.54 TCGA-CQ-6225-01 7 103143679 103143679 T A RELN Splice_Site p.X2759_splice 0.23 TCGA-CQ-6225-01 7 123267298 123267298 C A ASB15 Missense_Mutation p.L278I 0.44 deleterious(0) possibly_damaging(0.904) TCGA-CQ-6225-01 7 123269291 123269291 G C ASB15 Missense_Mutation p.D415H 0.23 deleterious(0.04) possibly_damaging(0.572) TCGA-CQ-6225-01 7 139258060 139258060 C T HIPK2 Silent p.P1070P 0.38 TCGA-CQ-6225-01 7 141722076 141722076 C T MGAM Missense_Mutation p.S240L 0.36 deleterious(0) probably_damaging(0.938) TCGA-CQ-6225-01 7 142124259 142124259 A G TRBV6-8 Silent p.T73T 0.47 TCGA-CQ-6225-01 7 148947393 148947393 G A ZNF212 Silent p.E56E 0.07 TCGA-CQ-6225-01 7 154862705 154862705 C T HTR5A Silent p.S32S 0.19 TCGA-CQ-6225-01 7 19761614 19761614 C A TMEM196 3'UTR 0.53 TCGA-CQ-6225-01 7 31917639 31917639 G A PDE1C Missense_Mutation p.R206W 0.18 deleterious(0) probably_damaging(0.962) TCGA-CQ-6225-01 7 6452649 6452649 A - DAGLB Frame_Shift_Del p.Y482Ifs*15 0.33 TCGA-CQ-6225-01 7 73604163 73604171 TCGGTCACT - EIF4H In_Frame_Del p.S110_R112del 0.38 TCGA-CQ-6225-01 7 87908901 87908907 TGTGGGC - STEAP4 Frame_Shift_Del p.A396Pfs*25 0.28 TCGA-CQ-6225-01 7 99565809 99565809 C A AZGP1 Silent p.L194L 0.45 TCGA-CQ-6225-01 8 106815640 106815640 T C ZFPM2 Silent p.G1110G 0.50 TCGA-CQ-6225-01 8 144808950 144808950 G C FAM83H Missense_Mutation p.T894S 0.45 tolerated(0.09) benign(0.26) TCGA-CQ-6225-01 8 30557645 30557645 G A GSR Silent p.S216S 0.78 TCGA-CQ-6225-01 8 52320696 52320696 G A PXDNL Missense_Mutation p.T1163I 0.05 deleterious(0) probably_damaging(0.913) TCGA-CQ-6225-01 8 52773448 52773448 T C PCMTD1 Silent p.G88G 0.07 TCGA-CQ-6225-01 8 53126796 53126796 T C ST18 Missense_Mutation p.K8E 0.45 deleterious(0) benign(0.033) TCGA-CQ-6225-01 8 57025569 57025569 C T MOS Missense_Mutation p.A325T 0.41 tolerated(0.09) benign(0.061) TCGA-CQ-6225-01 8 67740926 67740926 C A SGK3 Missense_Mutation p.S152Y 0.34 deleterious(0) possibly_damaging(0.874) TCGA-CQ-6225-01 8 71487192 71487192 C T TRAM1 Missense_Mutation p.R367Q 0.57 tolerated(0.1) benign(0.14) TCGA-CQ-6225-01 8 8185978 8185978 C G SGK223 Splice_Site p.X772_splice 0.57 TCGA-CQ-6225-01 9 121929496 121929496 C T BRINP1 Missense_Mutation p.D718N 0.05 deleterious(0) probably_damaging(0.956) TCGA-CQ-6225-01 9 125797792 125797792 A G GPR21 Missense_Mutation p.K316R 0.56 tolerated(0.33) benign(0.049) TCGA-CQ-6225-01 9 126164103 126164103 A T DENND1A Intron 0.49 TCGA-CQ-6225-01 9 130653215 130653215 C T ST6GALNAC6 Missense_Mutation p.M135I 0.29 benign(0.345) TCGA-CQ-6225-01 9 130653241 130653241 C G ST6GALNAC6 Missense_Mutation p.E127Q 0.35 benign(0.064) TCGA-CQ-6225-01 9 21077922 21077922 C T IFNB1 5'UTR 0.50 TCGA-CQ-6225-01 9 33676672 33676672 A G PTENP1 RNA 0.88 TCGA-CQ-6225-01 9 96055448 96055448 C T WNK2 Missense_Mutation p.R1938W 0.54 unknown(0) TCGA-CQ-6225-01 9 99694193 99694193 A C NUTM2G Missense_Mutation p.D69A 0.44 tolerated(0.43) benign(0.243) TCGA-CQ-6227-01 11 14990412 14990412 C T CALCA Missense_Mutation p.R120K 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-CQ-6227-01 11 69518109 69518109 C T FGF19 Missense_Mutation p.A86T 0.22 tolerated(0.08) possibly_damaging(0.803) TCGA-CQ-6227-01 11 72145270 72145270 G T CLPB Silent p.L83L 0.34 TCGA-CQ-6227-01 11 74904300 74904300 C T SLCO2B1 Silent p.P371P 0.18 TCGA-CQ-6227-01 12 13061574 13061574 C T GPRC5A Silent p.L131L 0.22 TCGA-CQ-6227-01 12 48596393 48596393 C T OR10AD1 Missense_Mutation p.S228N 0.14 tolerated(0.05) benign(0.124) TCGA-CQ-6227-01 12 54422634 54422634 G T HOXC6 Missense_Mutation p.R110M 0.08 deleterious(0.03) possibly_damaging(0.844) TCGA-CQ-6227-01 13 52026675 52026675 G A INTS6 5'UTR 0.18 TCGA-CQ-6227-01 14 106791284 106791284 C T IGHV3-30 Silent p.V24V 0.04 TCGA-CQ-6227-01 14 23532678 23532678 A T ACIN1 Missense_Mutation p.L960M 0.28 benign(0.19) TCGA-CQ-6227-01 14 23609754 23609754 G A SLC7A8 Silent p.F238F 0.07 TCGA-CQ-6227-01 14 69701570 69701570 C G EXD2 Missense_Mutation p.P291A 0.16 deleterious(0.02) probably_damaging(0.954) TCGA-CQ-6227-01 15 51741321 51741321 G A DMXL2 Nonsense_Mutation p.R2992* 0.10 TCGA-CQ-6227-01 15 85488064 85488064 G C SLC28A1 Missense_Mutation p.E614Q 0.21 tolerated(0.15) possibly_damaging(0.701) TCGA-CQ-6227-01 16 21666790 21666790 C G METTL9 3'UTR 0.21 TCGA-CQ-6227-01 16 28855381 28855381 C T TUFM Missense_Mutation p.G322R 0.14 deleterious(0) probably_damaging(1) TCGA-CQ-6227-01 16 46766444 46766444 G A MYLK3 Missense_Mutation p.R380C 0.21 tolerated(0.09) benign(0) TCGA-CQ-6227-01 16 84520478 84520478 G T TLDC1 Silent p.G239G 0.21 TCGA-CQ-6227-01 17 26968962 26968962 C G KIAA0100 Missense_Mutation p.Q237H 0.19 tolerated(0.55) benign(0) TCGA-CQ-6227-01 17 38245690 38245690 T G THRA Intron 0.18 TCGA-CQ-6227-01 17 74006565 74006565 A G EVPL Silent p.P907P 0.23 TCGA-CQ-6227-01 19 17918902 17918902 C T B3GNT3 Nonsense_Mutation p.Q96* 0.12 TCGA-CQ-6227-01 19 37440779 37440779 C T ZNF568 Nonsense_Mutation p.R242* 0.13 TCGA-CQ-6227-01 19 50385367 50385367 C T TBC1D17 Silent p.H199H 0.04 TCGA-CQ-6227-01 19 51200915 51200915 C T SHANK1 Missense_Mutation p.R623H 0.12 benign(0.277) TCGA-CQ-6227-01 19 57931031 57931031 G A AC003002.6 Silent p.E69E 0.19 TCGA-CQ-6227-01 1 11345928 11345928 G A UBIAD1 Missense_Mutation p.G253S 0.12 deleterious(0) probably_damaging(0.998) TCGA-CQ-6227-01 1 1273937 1273937 A C DVL1 Missense_Mutation p.M410R 0.19 deleterious(0) possibly_damaging(0.774) TCGA-CQ-6227-01 1 157494060 157494060 C T FCRL5 Intron 0.19 TCGA-CQ-6227-01 1 201358343 201358343 C T LAD1 Missense_Mutation p.D43N 0.18 tolerated(0.06) benign(0.287) TCGA-CQ-6227-01 1 22169810 22169810 G A HSPG2 Missense_Mutation p.S2913F 0.17 benign(0.14) TCGA-CQ-6227-01 1 6699997 6699997 C G DNAJC11 Silent p.L406L 0.17 TCGA-CQ-6227-01 1 91978847 91978847 C A CDC7 Missense_Mutation p.Q269K 0.11 tolerated(0.25) benign(0.006) TCGA-CQ-6227-01 20 44180733 44180733 C G WFDC8 Missense_Mutation p.E220Q 0.12 tolerated(0.62) benign(0.228) TCGA-CQ-6227-01 21 30934006 30934006 G T GRIK1 Nonsense_Mutation p.C765* 0.15 TCGA-CQ-6227-01 22 30125152 30125152 G A CABP7 Missense_Mutation p.E159K 0.22 deleterious(0.04) possibly_damaging(0.67) TCGA-CQ-6227-01 22 38328571 38328571 C G MICALL1 Missense_Mutation p.D676E 0.16 deleterious(0) probably_damaging(0.997) TCGA-CQ-6227-01 2 196729451 196729451 G C DNAH7 Missense_Mutation p.P2310A 0.06 deleterious(0) possibly_damaging(0.897) TCGA-CQ-6227-01 2 38302533 38302533 C T CYP1B1 Splice_Site 0.14 TCGA-CQ-6227-01 2 70188262 70188262 C T ASPRV1 Missense_Mutation p.V187I 0.10 tolerated(0.27) benign(0.007) TCGA-CQ-6227-01 2 96809654 96809654 C T DUSP2 Missense_Mutation p.D285N 0.25 deleterious(0) possibly_damaging(0.867) TCGA-CQ-6227-01 3 140401851 140401851 C T TRIM42 Missense_Mutation p.R297C 0.15 tolerated(0.08) possibly_damaging(0.809) TCGA-CQ-6227-01 3 165547361 165547361 G A BCHE Silent p.A487A 0.26 TCGA-CQ-6227-01 3 51978492 51978492 C A PARP3 Silent p.T140T 0.20 TCGA-CQ-6227-01 4 183721257 183721257 C T TENM3 Missense_Mutation p.A2618V 0.25 tolerated(0.34) possibly_damaging(0.75) TCGA-CQ-6227-01 4 26483643 26483643 C T CCKAR Missense_Mutation p.A302T 0.17 tolerated(0.53) benign(0.002) TCGA-CQ-6227-01 6 27860847 27860847 A G HIST1H2AM Silent p.P27P 0.18 TCGA-CQ-6227-01 6 33690810 33690810 C T IP6K3 Missense_Mutation p.R307Q 0.10 tolerated(0.51) benign(0.005) TCGA-CQ-6227-01 7 135390963 135390963 C T SLC13A4 Missense_Mutation p.V151M 0.14 deleterious(0.03) probably_damaging(0.979) TCGA-CQ-6227-01 7 30951738 30951738 G A AQP1 Missense_Mutation p.G72S 0.11 deleterious(0) probably_damaging(1) TCGA-CQ-6227-01 7 72730600 72730600 T C TRIM50 Missense_Mutation p.T280A 0.15 tolerated(0.14) benign(0.16) TCGA-CQ-6227-01 8 126067886 126067886 T C KIAA0196 Missense_Mutation p.I682V 0.21 tolerated(1) benign(0.004) TCGA-CQ-6227-01 9 116750680 116750680 G C ZNF618 Missense_Mutation p.E53Q 0.17 tolerated_low_confidence(0.1) benign(0.332) TCGA-CQ-6227-01 9 123860779 123860779 C T CNTRL Missense_Mutation p.S246L 0.21 possibly_damaging(0.869) TCGA-CQ-6227-01 9 27220064 27220064 G - TEK Frame_Shift_Del p.M1042* 0.25 TCGA-CQ-6228-01 10 12001352 12001352 G T UPF2 Missense_Mutation p.Q730K 0.24 deleterious(0.03) possibly_damaging(0.559) TCGA-CQ-6228-01 10 12126710 12126710 A C DHTKD1 Missense_Mutation p.E161A 0.32 tolerated(0.08) benign(0.119) TCGA-CQ-6228-01 10 43604571 43604571 G A RET Missense_Mutation p.A386T 0.47 tolerated(0.32) benign(0.001) TCGA-CQ-6228-01 10 55849763 55849763 C A PCDH15 Missense_Mutation p.V660F 0.23 tolerated(0.06) benign(0.048) TCGA-CQ-6228-01 10 89118157 89118157 T C NUTM2D Silent p.S45S 0.04 TCGA-CQ-6228-01 11 117789522 117789522 C G TMPRSS13 Missense_Mutation p.G18A 0.34 tolerated_low_confidence(1) benign(0.017) TCGA-CQ-6228-01 11 48158579 48158579 A C PTPRJ Missense_Mutation p.D633A 0.11 tolerated(0.2) benign(0.01) TCGA-CQ-6228-01 11 639780 639780 G A DRD4 Silent p.V177V 0.50 TCGA-CQ-6228-01 11 93466422 93466422 C T KIAA1731 3'Flank 0.04 TCGA-CQ-6228-01 11 93527025 93527025 A G MED17 Missense_Mutation p.I257V 0.03 tolerated(0.09) benign(0.426) TCGA-CQ-6228-01 12 38712166 38712166 C T ALG10B Missense_Mutation p.S92F 0.06 deleterious(0) probably_damaging(0.996) TCGA-CQ-6228-01 12 38714315 38714315 C G ALG10B Missense_Mutation p.S241C 0.07 tolerated(0.21) benign(0.005) TCGA-CQ-6228-01 12 38714762 38714762 C G ALG10B Nonsense_Mutation p.S390* 0.09 TCGA-CQ-6228-01 12 6788350 6788350 C G ZNF384 Splice_Site p.X23_splice 0.34 TCGA-CQ-6228-01 12 78513391 78513391 C A NAV3 Missense_Mutation p.P1139T 0.33 deleterious(0) probably_damaging(0.967) TCGA-CQ-6228-01 12 95442958 95442958 G A NR2C1 Silent p.C339C 0.36 TCGA-CQ-6228-01 12 97337517 97337517 G T NEDD1 Nonsense_Mutation p.E499* 0.35 TCGA-CQ-6228-01 15 43939610 43939610 G C CATSPER2 Missense_Mutation p.F67L 0.45 deleterious(0.03) benign(0.32) TCGA-CQ-6228-01 15 54305533 54305533 A G UNC13C Missense_Mutation p.T145A 0.04 tolerated_low_confidence(0.23) benign(0) TCGA-CQ-6228-01 15 55626120 55626120 A C PIGB Missense_Mutation p.I237L 0.13 deleterious(0.04) benign(0.305) TCGA-CQ-6228-01 15 83349371 83349371 C T AP3B2 Missense_Mutation p.R303Q 0.11 deleterious(0.01) benign(0.228) TCGA-CQ-6228-01 15 83796130 83796130 T C TM6SF1 Silent p.Y274Y 0.52 TCGA-CQ-6228-01 15 85333936 85333936 A G ZNF592 Missense_Mutation p.T741A 0.31 deleterious(0.05) probably_damaging(0.997) TCGA-CQ-6228-01 16 20944608 20944608 A T DNAH3 Missense_Mutation p.S4073R 0.35 deleterious(0) probably_damaging(0.997) TCGA-CQ-6228-01 16 23480233 23480233 T C GGA2 Missense_Mutation p.M569V 0.41 tolerated(1) benign(0.001) TCGA-CQ-6228-01 16 29913176 29913176 T C ASPHD1 Missense_Mutation p.L295P 0.47 deleterious(0) probably_damaging(0.996) TCGA-CQ-6228-01 16 31089215 31089215 A T ZNF646 Missense_Mutation p.I524F 0.38 tolerated(0.14) benign(0) TCGA-CQ-6228-01 16 50707787 50707787 G A SNX20 Silent p.L161L 0.17 TCGA-CQ-6228-01 16 67670700 67670700 A T CTCF Nonsense_Mutation p.K649* 0.38 TCGA-CQ-6228-01 16 67861219 67861219 G A TSNAXIP1 Missense_Mutation p.G524S 0.46 tolerated(0.68) probably_damaging(0.913) TCGA-CQ-6228-01 16 80638177 80638177 C T CDYL2 3'UTR 0.29 TCGA-CQ-6228-01 17 27308731 27308731 C T SEZ6 Missense_Mutation p.A128T 0.38 tolerated_low_confidence(0.3) benign(0.003) TCGA-CQ-6228-01 17 33343508 33343508 C T RFFL Missense_Mutation p.R256Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-CQ-6228-01 17 35872374 35872375 - A DUSP14 5'UTR p.M1? 0.44 TCGA-CQ-6228-01 17 38926053 38926053 G A KRT26 Missense_Mutation p.R308C 0.69 deleterious(0.01) benign(0.22) TCGA-CQ-6228-01 17 73775146 73775146 T A H3F3B Missense_Mutation p.K37M 0.39 deleterious_low_confidence(0.01) benign(0.019) TCGA-CQ-6228-01 17 7579386 7579386 T A TP53 Nonsense_Mutation p.K101* 0.81 TCGA-CQ-6228-01 17 79202706 79202706 A T ENTHD2 3'UTR 0.32 TCGA-CQ-6228-01 18 32621459 32621459 C T MAPRE2 5'UTR 0.76 TCGA-CQ-6228-01 19 10204170 10204170 G A ANGPTL6 Silent p.A359A 0.32 TCGA-CQ-6228-01 19 15132682 15132682 A G CCDC105 Missense_Mutation p.Y401C 0.31 deleterious(0) probably_damaging(0.968) TCGA-CQ-6228-01 19 18675832 18675832 G A KXD1 Splice_Site p.X85_splice 0.41 TCGA-CQ-6228-01 19 22941437 22941437 C T ZNF99 Missense_Mutation p.C425Y 0.14 tolerated(1) benign(0.008) TCGA-CQ-6228-01 19 23159247 23159247 T C ZNF728 Missense_Mutation p.T298A 0.28 tolerated(0.3) benign(0.311) TCGA-CQ-6228-01 19 23159296 23159296 C T ZNF728 Silent p.E281E 0.35 TCGA-CQ-6228-01 19 33200149 33200149 C G NUDT19 Missense_Mutation p.P258R 0.11 deleterious(0) probably_damaging(0.99) TCGA-CQ-6228-01 19 35862398 35862398 G A GPR42 Missense_Mutation p.R46H 0.86 tolerated(0.13) benign(0.035) TCGA-CQ-6228-01 19 36640782 36640782 G A CAPNS1 3'UTR 0.39 TCGA-CQ-6228-01 19 47492882 47492882 C T ARHGAP35 Missense_Mutation p.P1329L 0.38 tolerated(1) probably_damaging(0.999) TCGA-CQ-6228-01 1 109801082 109801082 C T CELSR2 Silent p.C1113C 0.38 TCGA-CQ-6228-01 1 110884036 110884036 C T RBM15 Missense_Mutation p.S670F 0.41 deleterious(0.01) benign(0.424) TCGA-CQ-6228-01 1 154223543 154223543 G A UBAP2L Missense_Mutation p.V414M 0.36 deleterious(0.01) unknown(0) TCGA-CQ-6228-01 1 156510539 156510539 G T IQGAP3 Silent p.I900I 0.48 TCGA-CQ-6228-01 1 157559108 157559108 C T FCRL4 Missense_Mutation p.E65K 0.14 tolerated(0.49) benign(0.013) TCGA-CQ-6228-01 1 161163765 161163765 C T ADAMTS4 Missense_Mutation p.G503D 0.48 tolerated(0.72) benign(0.005) TCGA-CQ-6228-01 1 173915954 173915954 G A RC3H1 Missense_Mutation p.H920Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-CQ-6228-01 1 19524242 19524242 C T UBR4 Missense_Mutation p.R272Q 0.69 possibly_damaging(0.894) TCGA-CQ-6228-01 1 204226792 204226792 G A PLEKHA6 Nonsense_Mutation p.Q405* 0.40 TCGA-CQ-6228-01 1 205779508 205779508 G A SLC41A1 Missense_Mutation p.S21F 0.39 tolerated_low_confidence(0.08) benign(0.001) TCGA-CQ-6228-01 1 248128809 248128809 T C OR2AK2 Missense_Mutation p.M59T 0.07 tolerated(0.39) benign(0.001) TCGA-CQ-6228-01 1 62234980 62234980 T C INADL Missense_Mutation p.I137T 0.21 deleterious(0) probably_damaging(1) TCGA-CQ-6228-01 1 85403472 85403472 C T MCOLN2 Missense_Mutation p.C434Y 0.70 deleterious(0) probably_damaging(1) TCGA-CQ-6228-01 20 21695341 21695341 C T PAX1 Missense_Mutation p.A502V 0.32 deleterious_low_confidence(0.03) benign(0.007) TCGA-CQ-6228-01 20 37199442 37199442 A T RALGAPB Missense_Mutation p.E1365V 0.42 tolerated(0.5) probably_damaging(0.966) TCGA-CQ-6228-01 20 428589 428589 C T TBC1D20 Missense_Mutation p.R67Q 0.10 tolerated(0.38) benign(0.015) TCGA-CQ-6228-01 21 30934039 30934039 G T GRIK1 Silent p.S754S 0.36 TCGA-CQ-6228-01 21 33296871 33296871 T C HUNK Missense_Mutation p.I118T 0.47 deleterious(0) probably_damaging(0.997) TCGA-CQ-6228-01 21 33951084 33951084 G A TCP10L Missense_Mutation p.P140S 0.45 deleterious(0.02) probably_damaging(0.93) TCGA-CQ-6228-01 21 37736544 37736544 C G MORC3 Missense_Mutation p.P536A 0.28 tolerated(0.09) benign(0.016) TCGA-CQ-6228-01 21 43795867 43795873 GGTGTAC - TMPRSS3 Frame_Shift_Del p.Y434Vfs*17 0.42 TCGA-CQ-6228-01 22 19209568 19209568 C G CLTCL1 Missense_Mutation p.D823H 0.33 deleterious(0) probably_damaging(0.983) TCGA-CQ-6228-01 2 130949610 130949610 C T TUBA3E Missense_Mutation p.A383T 0.37 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-CQ-6228-01 2 152266962 152266962 C T RIF1 Missense_Mutation p.L9F 0.25 tolerated(0.2) benign(0.242) TCGA-CQ-6228-01 2 15307156 15307172 GGGCCACAGGTGGCCCT - NBAS Missense_Mutation 0.32 TCGA-CQ-6228-01 2 166764213 166764213 C T TTC21B Missense_Mutation p.G848D 0.49 tolerated(0.29) benign(0.001) TCGA-CQ-6228-01 2 219082125 219082125 T A ARPC2 5'UTR 0.32 TCGA-CQ-6228-01 2 219221907 219221907 C T C2orf62 Missense_Mutation p.L39F 0.37 tolerated(0.08) benign(0.117) TCGA-CQ-6228-01 2 219526164 219526164 G A BCS1L Missense_Mutation p.R119Q 0.57 deleterious(0) probably_damaging(0.997) TCGA-CQ-6228-01 2 219543897 219543897 C T STK36 Silent p.L231L 0.31 TCGA-CQ-6228-01 2 233399048 233399048 A C CHRND Missense_Mutation p.N456T 0.06 deleterious(0.03) possibly_damaging(0.85) TCGA-CQ-6228-01 2 234460155 234460155 A C USP40 Nonsense_Mutation p.L247* 0.55 TCGA-CQ-6228-01 2 37501741 37501741 T A PRKD3 Missense_Mutation p.T492S 0.47 tolerated(0.57) benign(0.001) TCGA-CQ-6228-01 2 71629115 71629115 C G ZNF638 Silent p.V909V 0.33 TCGA-CQ-6228-01 2 71901427 71901427 G A DYSF Splice_Site p.X1962_splice 0.33 TCGA-CQ-6228-01 3 119331938 119331938 G A PLA1A Missense_Mutation p.V213M 0.54 deleterious(0) probably_damaging(1) TCGA-CQ-6228-01 3 121410533 121410533 G T GOLGB1 Missense_Mutation p.L2560I 0.57 benign(0.422) TCGA-CQ-6228-01 3 132185174 132185174 C G DNAJC13 Nonsense_Mutation p.S667* 0.27 TCGA-CQ-6228-01 3 153993911 153993911 A C DHX36 3'UTR 0.32 TCGA-CQ-6228-01 3 49151435 49151435 C T USP19 Missense_Mutation p.R830H 0.23 deleterious(0) probably_damaging(0.941) TCGA-CQ-6228-01 3 49154907 49154907 G T USP19 Missense_Mutation p.P190H 0.75 tolerated_low_confidence(0.45) benign(0.012) TCGA-CQ-6228-01 3 9807481 9807481 C T CAMK1 Silent p.K59K 0.81 TCGA-CQ-6228-01 4 148559781 148559781 C T PRMT10 Missense_Mutation p.V814I 0.49 tolerated(0.34) possibly_damaging(0.777) TCGA-CQ-6228-01 4 166238995 166238995 G T KLHL2 Missense_Mutation p.G547C 0.69 deleterious(0) probably_damaging(0.996) TCGA-CQ-6228-01 4 25676210 25676210 G A SLC34A2 Missense_Mutation p.A473T 0.44 deleterious(0) probably_damaging(0.975) TCGA-CQ-6228-01 4 5961272 5961272 G A C4orf50 Missense_Mutation p.R695C 0.38 tolerated(0.21) benign(0.019) TCGA-CQ-6228-01 4 72994497 72994497 T G NPFFR2 Missense_Mutation p.N165K 0.43 deleterious(0) probably_damaging(1) TCGA-CQ-6228-01 5 127670501 127670501 T A FBN2 Missense_Mutation p.M1337L 0.40 tolerated(1) benign(0.002) TCGA-CQ-6228-01 5 13830247 13830247 G C DNAH5 Missense_Mutation p.A2046G 0.50 possibly_damaging(0.694) TCGA-CQ-6228-01 5 140529803 140529803 A C PCDHB6 5'Flank 0.44 TCGA-CQ-6228-01 5 176732933 176732933 G T PRELID1 Missense_Mutation p.R127L 0.41 tolerated(0.1) benign(0.206) TCGA-CQ-6228-01 5 180326192 180326192 G C BTNL8 5'UTR 0.07 TCGA-CQ-6228-01 5 1879828 1879828 T C IRX4 Missense_Mutation p.I176V 0.41 deleterious(0) probably_damaging(0.98) TCGA-CQ-6228-01 5 35876219 35876219 G T IL7R Missense_Mutation p.K337N 0.28 deleterious(0.02) benign(0.045) TCGA-CQ-6228-01 5 95242283 95242283 G T ELL2 Missense_Mutation p.Q229K 0.10 deleterious(0.02) possibly_damaging(0.838) TCGA-CQ-6228-01 6 121615732 121615732 T C TBC1D32 Silent p.G405G 0.46 TCGA-CQ-6228-01 6 123539648 123539648 A G TRDN 3'UTR 0.25 TCGA-CQ-6228-01 6 133055712 133055712 T A VNN3 Missense_Mutation p.R40S 0.33 tolerated(0.65) benign(0.012) TCGA-CQ-6228-01 6 151293090 151293090 C A MTHFD1L Missense_Mutation p.P674H 0.19 deleterious(0) probably_damaging(1) TCGA-CQ-6228-01 6 160103469 160103469 T C SOD2 3'UTR 0.48 TCGA-CQ-6228-01 6 26158375 26158375 G A HIST1H2BD 5'UTR 0.51 TCGA-CQ-6228-01 6 46656253 46656253 G A TDRD6 Missense_Mutation p.V130M 0.50 deleterious(0) probably_damaging(0.998) TCGA-CQ-6228-01 6 99848618 99848618 T A PNISR Missense_Mutation p.D739V 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-CQ-6228-01 6 99862559 99862559 T C PNISR 5'UTR 0.43 TCGA-CQ-6228-01 7 103179606 103179606 T C RELN Missense_Mutation p.S2367G 0.06 deleterious(0) benign(0.04) TCGA-CQ-6228-01 7 107880402 107880402 C T NRCAM Splice_Site p.X36_splice 0.39 TCGA-CQ-6228-01 7 15584411 15584411 T G AGMO Missense_Mutation p.H132P 0.05 deleterious(0) probably_damaging(0.954) TCGA-CQ-6228-01 7 18067176 18067176 C A PRPS1L1 Missense_Mutation p.C77F 0.40 tolerated(0.05) probably_damaging(0.995) TCGA-CQ-6228-01 7 39472771 39472771 G A POU6F2 Silent p.Q374Q 0.08 TCGA-CQ-6228-01 7 42959045 42959045 G A PSMA2 Intron 0.37 TCGA-CQ-6228-01 7 44578580 44578580 G A NPC1L1 Silent p.Y472Y 0.32 TCGA-CQ-6228-01 7 73480043 73480043 C T ELN Silent p.A671A 0.37 TCGA-CQ-6228-01 7 77885383 77885383 C T MAGI2 Missense_Mutation p.E642K 0.45 tolerated(0.49) probably_damaging(0.942) TCGA-CQ-6228-01 7 95224465 95224465 C A PDK4 Missense_Mutation p.A48S 0.28 tolerated(0.14) benign(0.337) TCGA-CQ-6228-01 8 113304927 113304927 C T CSMD3 Missense_Mutation p.G2876D 0.05 deleterious(0.01) probably_damaging(0.966) TCGA-CQ-6228-01 9 125673155 125673155 C G ZBTB6 Missense_Mutation p.K399N 0.09 deleterious(0) probably_damaging(0.998) TCGA-CQ-6228-01 9 136333048 136333048 C T CACFD1 Missense_Mutation p.A109V 0.89 deleterious(0) probably_damaging(0.991) TCGA-CQ-6228-01 9 32631631 32631631 T A TAF1L Missense_Mutation p.E1316V 0.75 deleterious(0.04) probably_damaging(0.968) TCGA-CQ-6228-01 X 101912582 101912582 T C GPRASP1 Silent p.Y1247Y 0.30 TCGA-CQ-6228-01 X 131197495 131197495 G A MST4 Missense_Mutation p.G103D 0.34 deleterious(0) probably_damaging(0.947) TCGA-CQ-6228-01 X 152860037 152860037 G T FAM58A Missense_Mutation p.R131S 0.07 tolerated(0.14) benign(0.168) TCGA-CQ-6228-01 X 153063240 153063240 G A SSR4 Missense_Mutation p.D108N 0.29 deleterious(0) probably_damaging(1) TCGA-CQ-6228-01 X 30326947 30326947 C T NR0B1 Silent p.A178A 0.52 TCGA-CQ-6228-01 X 56591210 56591210 G A UBQLN2 Missense_Mutation p.G302R 0.47 tolerated(0.07) possibly_damaging(0.899) TCGA-CQ-6229-01 11 68548198 68548198 C T CPT1A Silent p.S456S 0.22 TCGA-CQ-6229-01 11 73717220 73717220 C T UCP3 Missense_Mutation p.A111T 0.31 tolerated(0.49) benign(0.001) TCGA-CQ-6229-01 11 828915 828915 C T EFCAB4A Missense_Mutation p.R77W 0.08 deleterious(0) possibly_damaging(0.663) TCGA-CQ-6229-01 13 115048325 115048325 C T UPF3A Missense_Mutation p.L110F 0.15 deleterious(0) probably_damaging(0.944) TCGA-CQ-6229-01 15 85165178 85165178 G A ZSCAN2 Silent p.K584K 0.12 TCGA-CQ-6229-01 16 3073267 3073267 G A HCFC1R1 Missense_Mutation p.P83L 0.11 tolerated_low_confidence(0.05) benign(0.294) TCGA-CQ-6229-01 16 3433182 3433182 C A ZSCAN32 Missense_Mutation p.Q376H 0.22 deleterious(0) possibly_damaging(0.605) TCGA-CQ-6229-01 17 34416628 34416628 G A CCL3 Missense_Mutation p.P30L 0.08 deleterious(0.02) possibly_damaging(0.537) TCGA-CQ-6229-01 17 38950249 38950249 G A KRT28 Missense_Mutation p.T343M 0.20 tolerated(0.2) benign(0.108) TCGA-CQ-6229-01 17 56604314 56604314 G A SEPT4 Missense_Mutation p.T44M 0.09 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-CQ-6229-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.63 TCGA-CQ-6229-01 17 8000028 8000028 C T ALOXE3 Missense_Mutation p.D817N 0.05 tolerated(0.17) benign(0.186) TCGA-CQ-6229-01 19 40224981 40224981 G A CLC Missense_Mutation p.P82L 0.09 deleterious(0.02) probably_damaging(0.938) TCGA-CQ-6229-01 1 175334302 175334302 T G TNR Silent p.R811R 0.26 TCGA-CQ-6229-01 1 205290569 205290569 G A NUAK2 Missense_Mutation p.T63I 0.13 deleterious(0) possibly_damaging(0.876) TCGA-CQ-6229-01 1 207103661 207103661 G A PIGR 3'UTR 0.08 TCGA-CQ-6229-01 1 228412431 228412431 C T OBSCN Silent p.V1067V 0.09 TCGA-CQ-6229-01 20 31424527 31424528 TA - MAPRE1 Frame_Shift_Del p.Y119* 0.13 TCGA-CQ-6229-01 20 57035926 57035926 G C APCDD1L Missense_Mutation p.P476A 0.18 tolerated(0.77) benign(0.009) TCGA-CQ-6229-01 22 31328614 31328614 A C MORC2 Missense_Mutation p.S827A 0.11 deleterious(0.04) benign(0.156) TCGA-CQ-6229-01 2 159672354 159672354 C G DAPL1 3'UTR 0.08 TCGA-CQ-6229-01 2 241658530 241658530 G T KIF1A Missense_Mutation p.P1703T 0.08 deleterious(0) probably_damaging(1) TCGA-CQ-6229-01 3 121383299 121383299 G A GOLGB1 3'UTR 0.25 TCGA-CQ-6229-01 3 126707784 126707784 G T PLXNA1 Missense_Mutation p.K116N 0.12 deleterious(0) probably_damaging(1) TCGA-CQ-6229-01 3 196746661 196746661 G A MFI2 Intron 0.10 TCGA-CQ-6229-01 4 70355227 70355227 G A UGT2B4 Missense_Mutation p.S311L 0.20 deleterious(0) possibly_damaging(0.905) TCGA-CQ-6229-01 5 172755126 172755126 C A STC2 Missense_Mutation p.G24V 0.17 deleterious(0) probably_damaging(0.959) TCGA-CQ-6229-01 6 31928456 31928456 A G SKIV2L Silent p.E161E 0.23 TCGA-CQ-6229-01 6 31931705 31931705 C T SKIV2L Silent p.L555L 0.29 TCGA-CQ-6229-01 6 35209013 35209013 C T SCUBE3 Missense_Mutation p.R389W 0.13 deleterious(0.01) benign(0.022) TCGA-CQ-6229-01 7 30830851 30830851 G A FAM188B Missense_Mutation p.S245N 0.10 tolerated(0.42) benign(0.006) TCGA-CQ-6229-01 7 48390325 48390325 C T ABCA13 Silent p.C3430C 0.33 TCGA-CQ-6229-01 7 84651711 84651711 T G SEMA3D Silent p.G470G 0.14 TCGA-CQ-6229-01 8 642491 642491 C G ERICH1 Silent p.G97G 0.06 TCGA-CQ-6229-01 8 92988161 92988161 G A RUNX1T1 Silent p.Y451Y 0.15 TCGA-CQ-6229-01 9 127287138 127287138 T G NR6A1 Missense_Mutation p.T406P 0.31 tolerated(0.14) benign(0.295) TCGA-CQ-6229-01 9 21971048 21971058 GCCGCGCCCCG - CDKN2A Frame_Shift_Del p.A102Rfs*14 0.24 TCGA-CQ-7063-01 10 102242120 102242120 C T WNT8B Silent p.F201F 0.24 TCGA-CQ-7063-01 10 105218275 105218275 C T CALHM1 Silent p.L78L 0.25 TCGA-CQ-7063-01 10 118084573 118084573 C T CCDC172 Missense_Mutation p.A17V 0.24 tolerated(0.21) possibly_damaging(0.88) TCGA-CQ-7063-01 10 124353105 124353105 C T DMBT1 Missense_Mutation p.P841S 0.03 tolerated(0.6) unknown(0) TCGA-CQ-7063-01 10 128114368 128114368 A G C10orf90 3'UTR 0.14 TCGA-CQ-7063-01 10 129870426 129870426 C T PTPRE Missense_Mutation p.S471F 0.19 tolerated(0.12) probably_damaging(0.933) TCGA-CQ-7063-01 10 25464907 25464907 G T GPR158 Silent p.P186P 0.30 TCGA-CQ-7063-01 10 31134180 31134180 G A ZNF438 Missense_Mutation p.H733Y 0.20 deleterious(0.01) benign(0.343) TCGA-CQ-7063-01 10 47087204 47087204 C G NPY4R Missense_Mutation p.Q141E 0.07 deleterious(0) probably_damaging(0.982) TCGA-CQ-7063-01 10 69921514 69921515 AG - MYPN Intron 0.11 TCGA-CQ-7063-01 10 82033423 82033423 C G MAT1A 3'UTR 0.18 TCGA-CQ-7063-01 10 97602196 97602196 C A ENTPD1 Missense_Mutation p.Q132K 0.16 tolerated(0.57) benign(0.008) TCGA-CQ-7063-01 11 1028778 1028778 T A MUC6 Missense_Mutation p.I487F 0.12 unknown(0) TCGA-CQ-7063-01 11 108098500 108098500 C G ATM Intron 0.20 TCGA-CQ-7063-01 11 126160817 126160817 C T TIRAP Missense_Mutation p.P10S 0.45 tolerated_low_confidence(0.21) benign(0.037) TCGA-CQ-7063-01 11 134074047 134074047 T C NCAPD3 Missense_Mutation p.Y370C 0.42 deleterious(0) probably_damaging(0.954) TCGA-CQ-7063-01 11 30937110 30937110 C G DCDC1 Missense_Mutation p.E1201Q 0.17 tolerated(0.15) possibly_damaging(0.607) TCGA-CQ-7063-01 11 47470388 47470388 G A RAPSN Silent p.F43F 0.20 TCGA-CQ-7063-01 11 534289 534289 C T HRAS Missense_Mutation p.G12S 0.56 deleterious(0.02) possibly_damaging(0.525) TCGA-CQ-7063-01 11 5906452 5906452 G C OR52E4 Missense_Mutation p.Q310H 0.40 tolerated(0.12) benign(0.003) TCGA-CQ-7063-01 11 62289614 62289614 G C AHNAK Nonsense_Mutation p.S4092* 0.21 TCGA-CQ-7063-01 11 71949125 71949125 G A INPPL1 Missense_Mutation p.E1198K 0.35 tolerated_low_confidence(0.19) benign(0.008) TCGA-CQ-7063-01 11 9466643 9466643 G C IPO7 Splice_Site p.X1007_splice 0.26 TCGA-CQ-7063-01 12 39726491 39726491 G A KIF21A Missense_Mutation p.R920C 0.17 deleterious(0) probably_damaging(0.995) TCGA-CQ-7063-01 12 52822220 52822220 C T KRT75 Missense_Mutation p.R401Q 0.18 deleterious(0.05) possibly_damaging(0.507) TCGA-CQ-7063-01 12 66700187 66700187 C A HELB Missense_Mutation p.L224I 0.15 deleterious(0) probably_damaging(0.999) TCGA-CQ-7063-01 12 9304252 9304252 G C PZP Missense_Mutation p.S1410C 0.12 tolerated(0.1) possibly_damaging(0.556) TCGA-CQ-7063-01 13 23908832 23908832 G C SACS Silent p.L3061L 0.15 TCGA-CQ-7063-01 13 27847630 27847630 G A RASL11A Silent p.%3D 0.20 TCGA-CQ-7063-01 13 46641511 46641511 G A CPB2 Silent p.L211L 0.16 TCGA-CQ-7063-01 14 23884890 23884890 G A MYH7 Missense_Mutation p.A1702V 0.22 deleterious(0.03) possibly_damaging(0.536) TCGA-CQ-7063-01 14 39605802 39605802 C G GEMIN2 3'UTR 0.19 TCGA-CQ-7063-01 14 59789756 59789756 C A DAAM1 Missense_Mutation p.A196D 0.21 deleterious(0) unknown(0) TCGA-CQ-7063-01 14 67805376 67805376 G C ATP6V1D Missense_Mutation p.L236V 0.18 tolerated(0.08) benign(0.048) TCGA-CQ-7063-01 14 74196619 74196619 C T ELMSAN1 Missense_Mutation p.E607K 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-CQ-7063-01 14 75576576 75576576 T C NEK9 Missense_Mutation p.S332G 0.06 tolerated(0.26) benign(0.006) TCGA-CQ-7063-01 14 80669361 80669361 G A DIO2 Missense_Mutation p.H201Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-CQ-7063-01 14 91772193 91772193 G A CCDC88C Silent p.S1091S 0.39 TCGA-CQ-7063-01 14 94674875 94674875 C T PPP4R4 Missense_Mutation p.T89M 0.26 deleterious(0.01) probably_damaging(0.978) TCGA-CQ-7063-01 15 101592104 101592104 G A LRRK1 Missense_Mutation p.D1210N 0.27 tolerated(0.29) benign(0.003) TCGA-CQ-7063-01 15 101718821 101718821 C T CHSY1 Missense_Mutation p.R394Q 0.22 tolerated(0.06) benign(0.378) TCGA-CQ-7063-01 15 20657700 20657700 C T HERC2P3 RNA 0.10 TCGA-CQ-7063-01 15 24921116 24921116 G T NPAP1 Silent p.P34P 0.13 TCGA-CQ-7063-01 15 42434788 42434788 C T PLA2G4F Missense_Mutation p.R756H 0.28 tolerated(0.17) possibly_damaging(0.507) TCGA-CQ-7063-01 15 69003203 69003203 G A CORO2B Missense_Mutation p.A156T 0.21 tolerated(0.09) benign(0.275) TCGA-CQ-7063-01 15 74911679 74911679 C T CLK3 Missense_Mutation p.R196W 0.26 deleterious(0) probably_damaging(0.99) TCGA-CQ-7063-01 15 81636335 81636335 G C TMC3 Missense_Mutation p.L524V 0.22 deleterious(0) probably_damaging(0.954) TCGA-CQ-7063-01 15 94910964 94910964 C T MCTP2 Silent p.L478L 0.24 TCGA-CQ-7063-01 16 25182072 25182072 C T LCMT1 Missense_Mutation p.S277L 0.20 tolerated(0.65) benign(0.002) TCGA-CQ-7063-01 16 31470893 31470893 C T ARMC5 Silent p.L16L 0.23 TCGA-CQ-7063-01 16 55563782 55563782 C T LPCAT2 Missense_Mutation p.R189C 0.24 deleterious(0) probably_damaging(0.997) TCGA-CQ-7063-01 16 786324 786324 C G NARFL Silent p.R127R 0.26 TCGA-CQ-7063-01 17 1936876 1936876 C T DPH1 Missense_Mutation p.R52W 0.19 deleterious(0.02) benign(0.339) TCGA-CQ-7063-01 17 19641684 19641684 C T ALDH3A1 Silent p.L433L 0.19 TCGA-CQ-7063-01 17 263198 263198 C G C17orf97 Missense_Mutation p.I188M 0.17 deleterious(0) probably_damaging(0.965) TCGA-CQ-7063-01 17 39643396 39643396 G T KRT36 Silent p.A338A 0.17 TCGA-CQ-7063-01 17 42988769 42988769 G A GFAP Missense_Mutation p.A321V 0.33 tolerated(0.46) benign(0.013) TCGA-CQ-7063-01 17 43912090 43912090 G A CRHR1 Missense_Mutation p.R432H 0.17 deleterious(0) probably_damaging(0.943) TCGA-CQ-7063-01 17 5461801 5461801 C T NLRP1 Missense_Mutation p.E739K 0.17 deleterious(0.04) benign(0.001) TCGA-CQ-7063-01 17 57746152 57746152 C G CLTC Missense_Mutation p.L715V 0.24 deleterious(0) probably_damaging(0.999) TCGA-CQ-7063-01 17 62788576 62788576 C T PLEKHM1P RNA 0.21 TCGA-CQ-7063-01 17 7578395 7578395 G T TP53 Missense_Mutation p.H179N 0.41 deleterious(0) probably_damaging(1) TCGA-CQ-7063-01 17 79982581 79982581 C T LRRC45 Missense_Mutation p.R99W 0.17 deleterious(0) possibly_damaging(0.847) TCGA-CQ-7063-01 18 12452279 12452279 G A SPIRE1 Missense_Mutation p.H663Y 0.15 tolerated(0.6) possibly_damaging(0.782) TCGA-CQ-7063-01 18 12452292 12452292 G A SPIRE1 Silent p.P658P 0.17 TCGA-CQ-7063-01 18 12452302 12452302 G A SPIRE1 Missense_Mutation p.S655L 0.17 tolerated(0.23) benign(0.096) TCGA-CQ-7063-01 18 21892035 21892035 G A OSBPL1A Silent p.Y335Y 0.22 TCGA-CQ-7063-01 18 47091826 47091826 C G LIPG Missense_Mutation p.F79L 0.26 deleterious(0.02) benign(0.167) TCGA-CQ-7063-01 18 47113116 47113116 A G LIPG Silent p.K459K 0.15 TCGA-CQ-7063-01 18 48513077 48513077 C G ELAC1 Silent p.V238V 0.21 TCGA-CQ-7063-01 18 56939841 56939841 G A RAX Nonsense_Mutation p.R99* 0.23 TCGA-CQ-7063-01 18 8379305 8379305 G C PTPRM Missense_Mutation p.E1251D 0.20 tolerated(0.37) benign(0.164) TCGA-CQ-7063-01 19 12691749 12691749 G A ZNF490 Silent p.H380H 0.26 TCGA-CQ-7063-01 19 12984814 12984814 G A MAST1 Silent p.A1281A 0.25 TCGA-CQ-7063-01 19 37488171 37488171 G A ZNF568 Silent p.Q462Q 0.33 TCGA-CQ-7063-01 19 45296736 45296736 G A CBLC Silent p.S381S 0.15 TCGA-CQ-7063-01 19 45889216 45889216 C G PPP1R13L Splice_Site p.X650_splice 0.27 TCGA-CQ-7063-01 19 47978655 47978655 G C KPTN 3'UTR 0.29 TCGA-CQ-7063-01 19 50243317 50243317 C G TSKS Missense_Mutation p.E541Q 0.23 tolerated(0.19) benign(0.197) TCGA-CQ-7063-01 19 5455986 5455986 C T ZNRF4 Missense_Mutation p.R162C 0.08 deleterious(0) probably_damaging(0.991) TCGA-CQ-7063-01 19 55649431 55649431 C G TNNT1 Missense_Mutation p.M133I 0.14 tolerated(0.08) benign(0.439) TCGA-CQ-7063-01 19 7569219 7569219 G A C19orf45 Missense_Mutation p.G235E 0.20 deleterious(0) probably_damaging(1) TCGA-CQ-7063-01 19 7976017 7976017 G A MAP2K7 Silent p.R276R 0.10 TCGA-CQ-7063-01 1 114483273 114483273 G C HIPK1 Missense_Mutation p.D90H 0.15 deleterious(0.04) possibly_damaging(0.687) TCGA-CQ-7063-01 1 145474153 145474153 C T ANKRD34A Silent p.F275F 0.21 TCGA-CQ-7063-01 1 156756563 156756563 C T PRCC Missense_Mutation p.S227F 0.21 deleterious(0.01) possibly_damaging(0.656) TCGA-CQ-7063-01 1 16258246 16258246 G A SPEN Silent p.E1837E 0.07 TCGA-CQ-7063-01 1 163131767 163131767 C G RGS5 Splice_Site p.X52_splice 0.14 TCGA-CQ-7063-01 1 168545890 168545890 C T XCL1 Silent p.I5I 0.11 TCGA-CQ-7063-01 1 16893758 16893758 C G NBPF1 Missense_Mutation p.E919Q 0.02 deleterious(0.02) possibly_damaging(0.533) TCGA-CQ-7063-01 1 172546684 172546684 C T SUCO Silent p.F423F 0.12 TCGA-CQ-7063-01 1 216221935 216221935 C A USH2A Missense_Mutation p.C2035F 0.17 probably_damaging(1) TCGA-CQ-7063-01 1 247695156 247695156 C T OR2C3 Missense_Mutation p.G220S 0.05 tolerated(0.09) benign(0.019) TCGA-CQ-7063-01 1 25780788 25780788 C T TMEM57 Missense_Mutation p.L130F 0.28 tolerated(0.09) possibly_damaging(0.842) TCGA-CQ-7063-01 1 26355755 26355755 C T EXTL1 Missense_Mutation p.S284L 0.16 tolerated(0.12) benign(0.003) TCGA-CQ-7063-01 1 28148834 28148834 G A STX12 Silent p.T275T 0.10 TCGA-CQ-7063-01 1 39305258 39305258 C T RRAGC Silent p.L389L 0.11 TCGA-CQ-7063-01 1 43892993 43892993 C G SZT2 Missense_Mutation p.Q1102E 0.14 tolerated(0.32) benign(0.014) TCGA-CQ-7063-01 20 1552368 1552368 C G SIRPB1 Missense_Mutation p.R250P 0.24 deleterious(0) probably_damaging(0.92) TCGA-CQ-7063-01 20 30193833 30193833 C G ID1 Intron 0.24 TCGA-CQ-7063-01 20 33147238 33147238 G A MAP1LC3A Missense_Mutation p.E66K 0.26 tolerated(0.07) possibly_damaging(0.504) TCGA-CQ-7063-01 20 35240503 35240503 G C C20orf24 Missense_Mutation p.L103F 0.20 tolerated_low_confidence(0.33) benign(0.002) TCGA-CQ-7063-01 20 44472992 44472992 C T ACOT8 Missense_Mutation p.E186K 0.22 deleterious(0) possibly_damaging(0.864) TCGA-CQ-7063-01 20 53227001 53227001 C G DOK5 Missense_Mutation p.S225C 0.16 deleterious(0) benign(0.34) TCGA-CQ-7063-01 20 58645874 58645874 G A C20orf197 Missense_Mutation p.A98T 0.32 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-CQ-7063-01 21 47680808 47680808 C G MCM3AP Missense_Mutation p.E1160D 0.23 deleterious(0.01) probably_damaging(0.978) TCGA-CQ-7063-01 22 22931032 22931032 C T IGLV2-33 Missense_Mutation p.P76L 0.16 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-CQ-7063-01 22 38247441 38247441 C G EIF3L Silent p.V79V 0.40 TCGA-CQ-7063-01 22 38693095 38693095 G C CSNK1E Intron 0.23 TCGA-CQ-7063-01 22 50893798 50893798 C T SBF1 Missense_Mutation p.R1470H 0.05 deleterious(0) probably_damaging(0.999) TCGA-CQ-7063-01 2 136587242 136587242 G A LCT Missense_Mutation p.T242M 0.22 tolerated(0.06) benign(0.088) TCGA-CQ-7063-01 2 141709461 141709461 C G LRP1B Missense_Mutation p.R979T 0.14 possibly_damaging(0.855) TCGA-CQ-7063-01 2 166929997 166929997 G A SCN1A Silent p.D45D 0.15 TCGA-CQ-7063-01 2 171704255 171704255 G A GAD1 Missense_Mutation p.E358K 0.22 tolerated(0.35) benign(0.384) TCGA-CQ-7063-01 2 179639753 179639753 G A TTN Missense_Mutation p.H2229Y 0.08 TCGA-CQ-7063-01 2 228212087 228212087 G T MFF Missense_Mutation p.D247Y 0.20 deleterious(0) probably_damaging(0.986) TCGA-CQ-7063-01 2 238249328 238249328 G A COL6A3 Missense_Mutation p.T2744M 0.25 unknown(0) TCGA-CQ-7063-01 2 31181273 31181273 G A GALNT14 Silent p.F157F 0.25 TCGA-CQ-7063-01 2 55804493 55804493 C T SMEK2 Splice_Site p.X522_splice 0.26 TCGA-CQ-7063-01 2 62096646 62096646 G A CCT4 Silent p.L512L 0.14 TCGA-CQ-7063-01 3 135745824 135745824 G A PPP2R3A Missense_Mutation p.E716K 0.20 tolerated(1) benign(0.099) TCGA-CQ-7063-01 3 169644929 169644929 G A SAMD7 Silent p.K293K 0.18 TCGA-CQ-7063-01 3 38349158 38349158 G A SLC22A14 Missense_Mutation p.R241H 0.20 deleterious(0.04) benign(0.391) TCGA-CQ-7063-01 3 38520710 38520710 G A ACVR2B Missense_Mutation p.R253Q 0.23 deleterious(0.01) benign(0.101) TCGA-CQ-7063-01 3 45049058 45049058 G A EXOSC7 Silent p.E254E 0.24 TCGA-CQ-7063-01 4 1823941 1823941 C G LETM1 Missense_Mutation p.L525F 0.25 deleterious(0) probably_damaging(0.928) TCGA-CQ-7063-01 4 2900000 2900000 G A ADD1 Silent p.L277L 0.22 TCGA-CQ-7063-01 4 48381835 48381835 G C SLAIN2 Missense_Mutation p.V278L 0.24 deleterious(0) probably_damaging(0.987) TCGA-CQ-7063-01 5 137735605 137735605 G A KDM3B Missense_Mutation p.E1035K 0.24 deleterious(0) probably_damaging(0.965) TCGA-CQ-7063-01 5 140557553 140557553 G C PCDHB8 5'UTR 0.09 TCGA-CQ-7063-01 5 140811313 140811313 G A PCDHGA12 Silent p.A329A 0.27 TCGA-CQ-7063-01 5 33963899 33963899 G C SLC45A2 Nonsense_Mutation p.S262* 0.20 TCGA-CQ-7063-01 5 55479375 55479375 C - ANKRD55 Frame_Shift_Del p.E49Kfs*6 0.16 TCGA-CQ-7063-01 5 69730835 69730835 C T GTF2H2B RNA 0.11 TCGA-CQ-7063-01 5 76342415 76342415 G C AGGF1 Missense_Mutation p.E372Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-CQ-7063-01 6 109965828 109965828 C G AK9 Missense_Mutation p.E275Q 0.12 deleterious(0.01) benign(0.168) TCGA-CQ-7063-01 6 118635300 118635300 G A SLC35F1 Missense_Mutation p.R371H 0.13 deleterious(0.04) benign(0.125) TCGA-CQ-7063-01 6 13327061 13327061 C G TBC1D7 Missense_Mutation p.E24Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-CQ-7063-01 6 158449979 158449979 G A SYNJ2 Missense_Mutation p.D136N 0.22 tolerated(0.25) benign(0.23) TCGA-CQ-7063-01 6 160189587 160189587 G T ACAT2 Missense_Mutation p.E139D 0.21 tolerated(1) benign(0.001) TCGA-CQ-7063-01 6 26124133 26124133 C G HIST1H2BC 5'UTR 0.20 TCGA-CQ-7063-01 6 29910684 29910685 - GATA HLA-A Frame_Shift_Ins p.E77Dfs*23 0.17 TCGA-CQ-7063-01 6 31583035 31583035 G C AIF1 5'UTR 0.30 TCGA-CQ-7063-01 6 32372949 32372949 C T BTNL2 Nonsense_Mutation p.W65* 0.23 TCGA-CQ-7063-01 6 38810443 38810443 C T DNAH8 Missense_Mutation p.R1320C 0.21 benign(0.444) TCGA-CQ-7063-01 6 47650381 47650381 G C GPR111 Missense_Mutation p.D696H 0.20 deleterious_low_confidence(0.01) benign(0.201) TCGA-CQ-7063-01 6 6175070 6175070 G A F13A1 Missense_Mutation p.T497I 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-CQ-7063-01 6 69728363 69728363 G T BAI3 Missense_Mutation p.Q693H 0.11 tolerated(0.16) benign(0.002) TCGA-CQ-7063-01 6 99374800 99374800 C T FBXL4 Missense_Mutation p.R22Q 0.19 deleterious_low_confidence(0.04) benign(0.017) TCGA-CQ-7063-01 7 121623864 121623864 C G PTPRZ1 Missense_Mutation p.I255M 0.21 deleterious(0.01) probably_damaging(1) TCGA-CQ-7063-01 7 127255607 127255607 C G PAX4 5'UTR 0.16 TCGA-CQ-7063-01 7 140301871 140301871 C G DENND2A Missense_Mutation p.E109D 0.25 tolerated(0.31) benign(0.001) TCGA-CQ-7063-01 7 65556990 65556990 C T ASL Intron 0.21 TCGA-CQ-7063-01 7 86824078 86824078 C A DMTF1 Missense_Mutation p.H703N 0.15 tolerated_low_confidence(0.26) benign(0.03) TCGA-CQ-7063-01 8 144992883 144992883 C G PLEC Missense_Mutation p.Q3839H 0.08 probably_damaging(0.968) TCGA-CQ-7063-01 8 144994004 144994004 C G PLEC Missense_Mutation p.E3466Q 0.19 probably_damaging(0.942) TCGA-CQ-7063-01 8 42129621 42129621 G A IKBKB Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.355) TCGA-CQ-7063-01 8 67408707 67408707 C T C8orf46 Nonsense_Mutation p.Q36* 0.15 TCGA-CQ-7063-01 9 105767823 105767823 G T CYLC2 Missense_Mutation p.A304S 0.14 tolerated(0.5) unknown(0) TCGA-CQ-7063-01 9 125273990 125273991 CT - OR1J2 Frame_Shift_Del p.F305Qfs*2 0.20 TCGA-CQ-7063-01 9 379800 379800 G A DOCK8 Missense_Mutation p.V824M 0.17 tolerated(0.96) probably_damaging(0.999) TCGA-CQ-7063-01 9 69423835 69423835 G A ANKRD20A4 Missense_Mutation p.E711K 0.51 tolerated(0.09) benign(0.189) TCGA-CQ-7063-01 9 73254098 73254098 C T TRPM3 Missense_Mutation p.E487K 0.22 deleterious(0) probably_damaging(0.996) TCGA-CQ-7063-01 9 77563059 77563059 C T C9orf40 Missense_Mutation p.D164N 0.25 tolerated(0.08) benign(0.047) TCGA-CQ-7063-01 9 79324833 79324833 G T PRUNE2 Missense_Mutation p.T786K 0.30 tolerated(0.19) benign(0.218) TCGA-CQ-7063-01 9 8460435 8460435 A G PTPRD Missense_Mutation p.V1284A 0.06 deleterious(0.02) probably_damaging(0.974) TCGA-CQ-7063-01 X 12904896 12904896 G C TLR7 Silent p.L423L 0.22 TCGA-CQ-7063-01 X 12905259 12905259 G C TLR7 Silent p.L544L 0.20 TCGA-CQ-7063-01 X 135764979 135764979 A C ARHGEF6 Missense_Mutation p.L473V 0.20 deleterious(0.04) probably_damaging(0.92) TCGA-CQ-7063-01 X 153694586 153694586 G A PLXNA3 Silent p.T924T 0.04 TCGA-CQ-7063-01 X 33038269 33038269 G T DMD Missense_Mutation p.A27E 0.21 benign(0.05) TCGA-CQ-7063-01 X 55514102 55514102 G T USP51 Missense_Mutation p.T424N 0.23 deleterious(0.05) possibly_damaging(0.46) TCGA-CQ-7063-01 X 71425945 71425945 C T ERCC6L Missense_Mutation p.R891H 0.28 tolerated(0.57) benign(0) TCGA-CQ-7063-01 X 76776328 76776328 G A ATRX Nonsense_Mutation p.Q2380* 0.26 TCGA-CQ-7064-01 10 104233472 104233472 C A TMEM180 Silent p.L357L 0.17 TCGA-CQ-7064-01 10 323193 323193 C G DIP2C 3'UTR 0.14 TCGA-CQ-7064-01 10 53893658 53893658 G C PRKG1 Missense_Mutation p.D332H 0.22 deleterious(0) probably_damaging(0.997) TCGA-CQ-7064-01 10 61007308 61007308 G A FAM13C 3'UTR 0.30 TCGA-CQ-7064-01 10 85974237 85974237 G A CDHR1 Missense_Mutation p.V814I 0.16 tolerated_low_confidence(0.17) benign(0.071) TCGA-CQ-7064-01 10 93221956 93221956 A T HECTD2 Intron 0.14 TCGA-CQ-7064-01 11 10327412 10327412 C G ADM Intron 0.20 TCGA-CQ-7064-01 11 114182777 114182777 C A NNMT Missense_Mutation p.P125T 0.15 tolerated(0.61) benign(0.005) TCGA-CQ-7064-01 11 123886728 123886728 C A OR10G4 Silent p.L149L 0.22 TCGA-CQ-7064-01 11 35640755 35640755 G C FJX1 Missense_Mutation p.E191Q 0.14 deleterious(0) probably_damaging(0.995) TCGA-CQ-7064-01 11 44286713 44286713 G T ALX4 Silent p.L309L 0.12 TCGA-CQ-7064-01 11 55322833 55322833 A T OR4C15 Missense_Mutation p.M351L 0.25 deleterious_low_confidence(0.04) benign(0.013) TCGA-CQ-7064-01 11 59210716 59210717 - CTCC OR5A1 Frame_Shift_Ins p.Q27Pfs*30 0.22 TCGA-CQ-7064-01 11 61511051 61511051 G A DAGLA Missense_Mutation p.R740Q 0.15 tolerated_low_confidence(0.23) benign(0.002) TCGA-CQ-7064-01 11 62751882 62751882 G C SLC22A6 Missense_Mutation p.T94R 0.17 deleterious(0) probably_damaging(0.912) TCGA-CQ-7064-01 11 7064249 7064249 C G NLRP14 Missense_Mutation p.S331C 0.25 tolerated(0.07) benign(0.132) TCGA-CQ-7064-01 12 112605214 112605214 G A HECTD4 Silent p.F4001F 0.19 TCGA-CQ-7064-01 12 120960070 120960070 C T COQ5 Nonsense_Mutation p.W100* 0.17 TCGA-CQ-7064-01 12 120966920 120966920 G C COQ5 Missense_Mutation p.L9V 0.21 deleterious_low_confidence(0.05) benign(0.005) TCGA-CQ-7064-01 12 54674541 54674541 C T HNRNPA1 5'UTR 0.17 TCGA-CQ-7064-01 13 53420641 53420641 C T PCDH8 Missense_Mutation p.G644E 0.16 deleterious(0) probably_damaging(0.964) TCGA-CQ-7064-01 13 58207202 58207202 C T PCDH17 Silent p.D174D 0.14 TCGA-CQ-7064-01 13 78214811 78214811 G T SCEL Missense_Mutation p.R613S 0.14 tolerated(0.06) probably_damaging(0.995) TCGA-CQ-7064-01 14 44974150 44974150 C T FSCB Missense_Mutation p.E681K 0.18 tolerated(0.07) unknown(0) TCGA-CQ-7064-01 14 61201509 61201509 G T MNAT1 5'UTR 0.33 TCGA-CQ-7064-01 14 64902332 64902332 G C MTHFD1 Missense_Mutation p.E514Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CQ-7064-01 14 74531697 74531697 G C CCDC176 3'UTR 0.31 TCGA-CQ-7064-01 14 93118418 93118418 G A RIN3 Missense_Mutation p.E342K 0.11 tolerated(0.07) benign(0.189) TCGA-CQ-7064-01 15 42720295 42720295 C T ZNF106 Missense_Mutation p.R1617Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-CQ-7064-01 15 48500249 48500249 G A SLC12A1 Silent p.K111K 0.22 TCGA-CQ-7064-01 15 59368279 59368279 C T RNF111 Nonsense_Mutation p.Q605* 0.16 TCGA-CQ-7064-01 15 80884001 80884001 G T ARNT2 Nonsense_Mutation p.E671* 0.22 TCGA-CQ-7064-01 16 354374 354374 C T AXIN1 Missense_Mutation p.R395H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CQ-7064-01 17 30348463 30348463 G T LRRC37B Nonsense_Mutation p.E100* 0.23 TCGA-CQ-7064-01 17 38189606 38189606 G A MED24 Silent p.L221L 0.30 TCGA-CQ-7064-01 17 39020020 39020020 G A KRT12 Missense_Mutation p.R302W 0.18 deleterious(0) probably_damaging(1) TCGA-CQ-7064-01 17 41150730 41150730 G A RPL27 5'UTR 0.17 TCGA-CQ-7064-01 17 73748648 73748648 C T ITGB4 Silent p.S1366S 0.19 TCGA-CQ-7064-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.14 deleterious(0) probably_damaging(1) TCGA-CQ-7064-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CQ-7064-01 17 76168045 76168045 G C SYNGR2 3'UTR 0.27 TCGA-CQ-7064-01 17 7662351 7662351 C A DNAH2 Missense_Mutation p.A786E 0.10 benign(0.001) TCGA-CQ-7064-01 17 79278484 79278484 C A LINC00482 RNA 0.25 TCGA-CQ-7064-01 19 15989614 15989614 G T CYP4F2 Silent p.G510G 0.16 TCGA-CQ-7064-01 19 22155963 22155963 T A ZNF208 Missense_Mutation p.T625S 0.19 tolerated(0.4) benign(0.014) TCGA-CQ-7064-01 19 36386969 36386969 G C NFKBID Silent p.L173L 0.10 TCGA-CQ-7064-01 19 40520014 40520014 G A ZNF546 Silent p.G279G 0.09 TCGA-CQ-7064-01 19 42187738 42187738 G A CEACAM7 Silent p.D228D 0.15 TCGA-CQ-7064-01 19 46627174 46627174 G C IGFL3 Missense_Mutation p.H107D 0.11 tolerated(0.2) benign(0.002) TCGA-CQ-7064-01 19 48806016 48806016 G A CCDC114 Missense_Mutation p.S355L 0.27 tolerated(0.15) benign(0.002) TCGA-CQ-7064-01 19 50157947 50157947 G T SCAF1 Missense_Mutation p.M1146I 0.10 benign(0) TCGA-CQ-7064-01 19 53848880 53848880 C T ZNF845 Missense_Mutation p.S46F 0.30 tolerated(0.15) benign(0.059) TCGA-CQ-7064-01 19 59028362 59028362 C T ZBTB45 Missense_Mutation p.G227S 0.31 tolerated(0.26) possibly_damaging(0.559) TCGA-CQ-7064-01 19 6187370 6187370 C G ACSBG2 Missense_Mutation p.I539M 0.23 deleterious(0) probably_damaging(1) TCGA-CQ-7064-01 19 8592316 8592316 G T MYO1F Silent p.R794R 0.12 TCGA-CQ-7064-01 19 9088981 9088981 G A MUC16 Missense_Mutation p.T945M 0.23 unknown(0) TCGA-CQ-7064-01 1 109814076 109814076 C T CELSR2 Missense_Mutation p.S2582F 0.18 deleterious(0) possibly_damaging(0.853) TCGA-CQ-7064-01 1 12638942 12638942 C T DHRS3 Missense_Mutation p.G168S 0.14 deleterious(0) probably_damaging(1) TCGA-CQ-7064-01 1 155108444 155108444 C G SLC50A1 Silent p.T19T 0.13 TCGA-CQ-7064-01 1 155717369 155717369 G A GON4L 3'Flank 0.11 TCGA-CQ-7064-01 1 157557303 157557303 C A FCRL4 Nonsense_Mutation p.E204* 0.18 TCGA-CQ-7064-01 1 161654814 161654814 G A RPL31P11 RNA 0.28 TCGA-CQ-7064-01 1 169529837 169529837 C A F5 Missense_Mutation p.D181Y 0.12 deleterious(0) probably_damaging(1) TCGA-CQ-7064-01 1 175375526 175375526 C G TNR Missense_Mutation p.E109Q 0.12 deleterious(0.03) benign(0.446) TCGA-CQ-7064-01 1 206665080 206665080 G A IKBKE Missense_Mutation p.M611I 0.17 tolerated(0.12) benign(0.027) TCGA-CQ-7064-01 1 217842395 217842395 G A SPATA17 Missense_Mutation p.M87I 0.10 deleterious(0) benign(0.006) TCGA-CQ-7064-01 1 223177528 223177528 C T DISP1 Missense_Mutation p.T930I 0.11 tolerated(0.09) possibly_damaging(0.756) TCGA-CQ-7064-01 1 27427083 27427083 C T SLC9A1 Silent p.P721P 0.06 TCGA-CQ-7064-01 1 27706340 27706340 C G CD164L2 3'UTR 0.27 TCGA-CQ-7064-01 1 78098862 78098862 G C ZZZ3 Missense_Mutation p.Q60E 0.19 deleterious(0.04) benign(0.276) TCGA-CQ-7064-01 20 21492834 21492834 C T NKX2-2 Missense_Mutation p.M183I 0.20 tolerated(0.11) possibly_damaging(0.718) TCGA-CQ-7064-01 20 44045292 44045292 C A PIGT Nonsense_Mutation p.S108* 0.14 TCGA-CQ-7064-01 22 29629429 29629429 T G EMID1 Silent p.T295T 0.06 TCGA-CQ-7064-01 22 40060134 40060134 G A CACNA1I Silent p.T1212T 0.10 TCGA-CQ-7064-01 2 168108057 168108057 T A XIRP2 Missense_Mutation p.S3385R 0.17 benign(0.032) TCGA-CQ-7064-01 2 176981808 176981808 G C HOXD10 Missense_Mutation p.D83H 0.11 deleterious(0) possibly_damaging(0.866) TCGA-CQ-7064-01 2 179603911 179603911 G A TTN Silent p.S4683S 0.19 TCGA-CQ-7064-01 2 20145695 20145695 G A WDR35 Missense_Mutation p.T577M 0.40 tolerated(0.1) possibly_damaging(0.542) TCGA-CQ-7064-01 2 231149061 231149061 G C SP140 Missense_Mutation p.R500T 0.25 deleterious(0) possibly_damaging(0.546) TCGA-CQ-7064-01 2 61566505 61566505 C G USP34 Missense_Mutation p.E909Q 0.11 tolerated(0.17) benign(0.057) TCGA-CQ-7064-01 3 123038541 123038541 C T ADCY5 Missense_Mutation p.E746K 0.25 tolerated(0.47) benign(0.017) TCGA-CQ-7064-01 3 126741158 126741158 G C PLXNA1 Missense_Mutation p.K1423N 0.21 deleterious(0.02) probably_damaging(0.932) TCGA-CQ-7064-01 3 154002767 154002767 C T DHX36 Missense_Mutation p.D681N 0.25 tolerated(0.06) probably_damaging(0.923) TCGA-CQ-7064-01 3 184101126 184101126 G A CHRD Missense_Mutation p.D414N 0.15 tolerated(0.11) probably_damaging(0.917) TCGA-CQ-7064-01 3 190106151 190106151 C G CLDN16 Missense_Mutation p.F81L 0.11 tolerated(0.15) benign(0.015) TCGA-CQ-7064-01 3 19295145 19295145 G C KCNH8 Splice_Site p.X26_splice 0.24 TCGA-CQ-7064-01 3 194080671 194080671 G T LRRC15 Missense_Mutation p.Q374K 0.24 tolerated(0.29) benign(0.192) TCGA-CQ-7064-01 3 42916886 42916886 C T CYP8B1 Silent p.E141E 0.18 TCGA-CQ-7064-01 3 44846575 44846575 G A KIF15 Missense_Mutation p.E582K 0.21 deleterious(0.02) benign(0.146) TCGA-CQ-7064-01 3 49282283 49282283 G A CCDC36 Intron 0.30 TCGA-CQ-7064-01 4 103533614 103533614 G C NFKB1 Missense_Mutation p.D815H 0.18 tolerated(0.11) benign(0.029) TCGA-CQ-7064-01 4 113568609 113568609 G A LARP7 Missense_Mutation p.E308K 0.19 tolerated(0.17) benign(0.208) TCGA-CQ-7064-01 4 152203467 152203467 C T PRSS48 Missense_Mutation p.S128F 0.18 deleterious(0) probably_damaging(0.99) TCGA-CQ-7064-01 4 187549314 187549314 C A FAT1 Nonsense_Mutation p.E1602* 0.25 TCGA-CQ-7064-01 4 44450114 44450114 C A KCTD8 Missense_Mutation p.V143F 0.17 deleterious(0) possibly_damaging(0.717) TCGA-CQ-7064-01 4 72363343 72363343 C T SLC4A4 Silent p.F700F 0.17 TCGA-CQ-7064-01 5 133634305 133634305 C T CDKL3 3'UTR 0.14 TCGA-CQ-7064-01 5 140242295 140242295 G T AC005609.1 3'UTR 0.25 TCGA-CQ-7064-01 5 140683010 140683010 C G SLC25A2 Missense_Mutation p.E141D 0.06 tolerated(0.18) benign(0.297) TCGA-CQ-7064-01 5 147470777 147470777 C A SPINK5 Silent p.R218R 0.25 TCGA-CQ-7064-01 5 171491742 171491742 C T STK10 Silent p.T688T 0.07 TCGA-CQ-7064-01 5 177733887 177733887 C G COL23A1 Missense_Mutation p.R132T 0.24 deleterious(0.02) unknown(0) TCGA-CQ-7064-01 5 38418304 38418304 G A EGFLAM Missense_Mutation p.R544K 0.31 tolerated(0.96) benign(0.002) TCGA-CQ-7064-01 5 41142954 41142954 T C C6 Missense_Mutation p.I926M 0.33 deleterious(0.03) possibly_damaging(0.779) TCGA-CQ-7064-01 5 63256789 63256789 C G HTR1A Missense_Mutation p.S253T 0.12 tolerated(0.54) benign(0.005) TCGA-CQ-7064-01 6 107390514 107390514 G A BEND3 Silent p.N627N 0.17 TCGA-CQ-7064-01 6 110300831 110300831 C T GPR6 Silent p.N172N 0.18 TCGA-CQ-7064-01 6 117724426 117724426 C T ROS1 Silent p.P151P 0.19 TCGA-CQ-7064-01 6 160464220 160464220 G A IGF2R Silent p.T507T 0.13 TCGA-CQ-7064-01 6 26056263 26056263 C A HIST1H1C Missense_Mutation p.V132F 0.15 deleterious(0.02) unknown(0) TCGA-CQ-7064-01 6 26597435 26597435 C G ABT1 Silent p.V75V 0.22 TCGA-CQ-7064-01 6 80223150 80223150 C T LCA5 Missense_Mutation p.E167K 0.17 deleterious(0) probably_damaging(0.998) TCGA-CQ-7064-01 7 100771697 100771697 C G SERPINE1 Missense_Mutation p.T8S 0.17 tolerated(0.36) benign(0.005) TCGA-CQ-7064-01 7 13971306 13971306 C T ETV1 Missense_Mutation p.R208H 0.16 tolerated(0.06) probably_damaging(0.951) TCGA-CQ-7064-01 7 152055756 152055756 G A KMT2C Nonsense_Mutation p.R56* 0.14 TCGA-CQ-7064-01 7 30491745 30491745 C T NOD1 Missense_Mutation p.E430K 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-CQ-7064-01 7 87150144 87150144 G C ABCB1 Missense_Mutation p.Q912E 0.15 deleterious(0.01) benign(0.102) TCGA-CQ-7064-01 7 96339138 96339138 C G SHFM1 5'UTR 0.19 TCGA-CQ-7064-01 8 103354904 103354904 G C UBR5 Missense_Mutation p.L299V 0.07 tolerated(0.27) possibly_damaging(0.745) TCGA-CQ-7064-01 8 105026752 105026752 G A RIMS2 Silent p.G1081G 0.30 TCGA-CQ-7064-01 8 10532168 10532168 C T C8orf74 Missense_Mutation p.R21W 0.35 deleterious(0) probably_damaging(0.989) TCGA-CQ-7064-01 8 113649148 113649148 T A CSMD3 Missense_Mutation p.T1205S 0.12 tolerated(0.28) benign(0.062) TCGA-CQ-7064-01 8 144776523 144776523 G C ZNF707 Missense_Mutation p.E313D 0.09 deleterious(0) possibly_damaging(0.818) TCGA-CQ-7064-01 8 52321297 52321297 C T PXDNL Missense_Mutation p.E963K 0.33 deleterious(0) probably_damaging(0.989) TCGA-CQ-7064-01 8 56015684 56015684 G A XKR4 Silent p.P212P 0.05 TCGA-CQ-7064-01 8 64099415 64099415 A T YTHDF3 Missense_Mutation p.K281N 0.22 tolerated(0.07) probably_damaging(0.971) TCGA-CQ-7064-01 9 116822468 116822468 G A AMBP 3'UTR 0.21 TCGA-CQ-7064-01 9 117400893 117400893 G A C9orf91 Missense_Mutation p.E246K 0.18 tolerated(0.11) benign(0.427) TCGA-CQ-7064-01 9 130548517 130548517 C G CDK9 Missense_Mutation p.F30L 0.17 deleterious(0.03) benign(0.028) TCGA-CQ-7064-01 9 140007845 140007845 C T DPP7 Missense_Mutation p.D197N 0.19 tolerated(0.26) benign(0.008) TCGA-CQ-7064-01 9 140356632 140356632 C A PNPLA7 Missense_Mutation p.C1215F 0.10 tolerated(0.69) possibly_damaging(0.847) TCGA-CQ-7064-01 9 37428508 37428508 C G GRHPR Silent p.L144L 0.08 TCGA-CQ-7064-01 9 38396346 38396346 G A ALDH1B1 Missense_Mutation p.A201T 0.21 deleterious(0.02) benign(0.227) TCGA-CQ-7064-01 9 39144302 39144307 TGGGAA - CNTNAP3 In_Frame_Del p.C562_Q564delinsW 0.21 TCGA-CQ-7064-01 9 93624537 93624537 G A SYK Missense_Mutation p.E210K 0.12 tolerated(0.28) possibly_damaging(0.622) TCGA-CQ-7064-01 X 153171135 153171135 C A AVPR2 Missense_Mutation p.L59M 0.18 deleterious(0) probably_damaging(1) TCGA-CQ-7064-01 X 154261754 154261754 C T FUNDC2 Silent p.F70F 0.32 TCGA-CQ-7064-01 X 30686182 30686182 A G GK Missense_Mutation p.E69G 0.26 tolerated(0.18) benign(0.236) TCGA-CQ-7064-01 X 70598236 70598236 G A TAF1 Missense_Mutation p.G382E 0.03 tolerated(0.09) possibly_damaging(0.71) TCGA-CQ-7065-01 10 48383918 48383918 G - RBP3 Frame_Shift_Del p.P1105Qfs*25 0.24 TCGA-CQ-7065-01 11 102962427 102962437 AGCCCGGCAGG - DCUN1D5 Intron 0.50 TCGA-CQ-7065-01 11 1270603 1270603 G A MUC5B Missense_Mutation p.V4165I 0.47 unknown(0) TCGA-CQ-7065-01 11 128710112 128710112 G A KCNJ1 Silent p.V28V 0.22 TCGA-CQ-7065-01 11 791950 791950 A G SLC25A22 Missense_Mutation p.S313P 0.45 tolerated(0.2) benign(0.048) TCGA-CQ-7065-01 12 123200127 123200127 G A HCAR3 Silent p.I386I 0.34 TCGA-CQ-7065-01 12 48723118 48723118 G A H1FNT Missense_Mutation p.R15H 0.27 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-CQ-7065-01 12 52911705 52911706 - T KRT5 Frame_Shift_Ins p.N301Kfs*8 0.28 TCGA-CQ-7065-01 12 56079057 56079057 G A ITGA7 Missense_Mutation p.R1071W 0.43 deleterious(0) probably_damaging(0.994) TCGA-CQ-7065-01 12 57871047 57871047 A T ARHGAP9 Silent p.P254P 0.27 TCGA-CQ-7065-01 13 111279875 111279875 C T CARKD Missense_Mutation p.A159V 0.06 tolerated(0.91) benign(0.002) TCGA-CQ-7065-01 13 32783208 32783208 T C FRY Missense_Mutation p.S1413P 0.56 tolerated(0.11) benign(0.431) TCGA-CQ-7065-01 13 61985308 61985308 C A PCDH20 3'UTR 0.67 TCGA-CQ-7065-01 14 20216210 20216210 T C OR4Q3 Silent p.S208S 0.30 TCGA-CQ-7065-01 14 23451481 23451481 C G AJUBA 5'UTR 0.37 TCGA-CQ-7065-01 14 50255970 50255970 C T NEMF Missense_Mutation p.R930K 0.31 tolerated(1) benign(0) TCGA-CQ-7065-01 16 30096327 30096327 C T PPP4C Missense_Mutation p.P290S 0.38 deleterious(0.04) benign(0.004) TCGA-CQ-7065-01 17 19459314 19459314 T C SLC47A1 Missense_Mutation p.L287P 0.41 deleterious(0) probably_damaging(0.991) TCGA-CQ-7065-01 17 7578394 7578394 T G TP53 Missense_Mutation p.H179P 0.30 deleterious(0.01) probably_damaging(1) TCGA-CQ-7065-01 19 42740862 42740862 C A AC006486.9 Nonsense_Mutation p.E101* 0.04 TCGA-CQ-7065-01 19 9085093 9085093 G T MUC16 Nonsense_Mutation p.S2241* 0.34 TCGA-CQ-7065-01 1 1019763 1019763 C T C1orf159 Missense_Mutation p.A158T 0.30 deleterious(0) probably_damaging(0.983) TCGA-CQ-7065-01 2 128046236 128046236 C T ERCC3 Missense_Mutation p.G343S 0.31 deleterious(0) probably_damaging(1) TCGA-CQ-7065-01 2 141806669 141806669 G A LRP1B Missense_Mutation p.R559C 0.28 possibly_damaging(0.689) TCGA-CQ-7065-01 2 166153524 166153524 C G SCN2A Intron 0.69 TCGA-CQ-7065-01 2 166245201 166245201 C T SCN2A Missense_Mutation p.R1629C 0.25 deleterious(0) probably_damaging(0.961) TCGA-CQ-7065-01 2 179596537 179596537 C A TTN Missense_Mutation p.D5689Y 0.28 TCGA-CQ-7065-01 2 180830667 180830667 T C CWC22 Missense_Mutation p.D418G 0.28 tolerated(0.35) benign(0.003) TCGA-CQ-7065-01 2 217543684 217543684 C T IGFBP5 Silent p.V152V 0.42 TCGA-CQ-7065-01 2 40655955 40655955 T C SLC8A1 Missense_Mutation p.E489G 0.35 deleterious(0.02) probably_damaging(1) TCGA-CQ-7065-01 3 153943639 153943639 T C ARHGEF26 Intron 0.25 TCGA-CQ-7065-01 3 179080166 179080166 T A MFN1 Missense_Mutation p.H144Q 0.57 deleterious(0) probably_damaging(0.989) TCGA-CQ-7065-01 3 195702772 195702772 C T SDHAP1 Splice_Site 0.21 TCGA-CQ-7065-01 3 195789750 195789750 G A TFRC Missense_Mutation p.S460L 0.32 deleterious(0) probably_damaging(0.944) TCGA-CQ-7065-01 3 52269072 52269072 G A TWF2 Missense_Mutation p.R26W 0.56 deleterious(0) probably_damaging(1) TCGA-CQ-7065-01 3 57898975 57898975 T C SLMAP Missense_Mutation p.L670P 0.12 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-CQ-7065-01 4 177136850 177136850 G A ASB5 Silent p.C297C 0.09 TCGA-CQ-7065-01 4 20544192 20544192 G A SLIT2 Missense_Mutation p.C740Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-CQ-7065-01 4 7069763 7069763 T C GRPEL1 5'UTR 0.12 TCGA-CQ-7065-01 5 113829157 113829157 G A KCNN2 Silent p.V480V 0.26 TCGA-CQ-7065-01 5 122725742 122725742 C T CEP120 Silent p.G377G 0.07 TCGA-CQ-7065-01 7 100420084 100420084 C T EPHB4 Missense_Mutation p.R206Q 0.25 tolerated(0.47) benign(0.019) TCGA-CQ-7065-01 8 87917339 87917339 C T CNBD1 Silent p.H63H 0.23 TCGA-CQ-7065-01 X 140985590 140985590 T C MAGEC3 Missense_Mutation p.V635A 0.36 tolerated(0.43) possibly_damaging(0.543) TCGA-CQ-7065-01 X 140994879 140994879 C G MAGEC1 Nonsense_Mutation p.Y563* 0.02 TCGA-CQ-7065-01 X 153763390 153763390 T G G6PD Missense_Mutation p.S190R 0.51 deleterious(0.02) probably_damaging(0.992) TCGA-CQ-7065-01 X 30236705 30236705 G A MAGEB2 Missense_Mutation p.R3H 0.81 deleterious(0.03) probably_damaging(1) TCGA-CQ-7068-01 10 103569963 103569963 G A MGEA5 Missense_Mutation p.T153I 0.07 tolerated(0.51) benign(0.007) TCGA-CQ-7068-01 10 104416918 104416918 C T TRIM8 Missense_Mutation p.P488L 0.26 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-CQ-7068-01 10 1130340 1130340 C T WDR37 Intron 0.30 TCGA-CQ-7068-01 10 24834871 24834871 C T KIAA1217 Missense_Mutation p.S1817F 0.31 deleterious(0) possibly_damaging(0.713) TCGA-CQ-7068-01 10 63759861 63759861 G A ARID5B Missense_Mutation p.E172K 0.25 deleterious(0.03) possibly_damaging(0.693) TCGA-CQ-7068-01 10 7618752 7618752 G A ITIH5 Missense_Mutation p.R548W 0.09 deleterious(0.01) possibly_damaging(0.663) TCGA-CQ-7068-01 10 92678707 92678707 G A ANKRD1 Missense_Mutation p.T123M 0.18 tolerated(0.35) benign(0.022) TCGA-CQ-7068-01 11 1093601 1093601 G A MUC2 Missense_Mutation p.G1807D 0.12 unknown(0) TCGA-CQ-7068-01 11 113934865 113934865 G T ZBTB16 Silent p.G281G 0.25 TCGA-CQ-7068-01 11 17428294 17428294 C T ABCC8 Silent p.T1068T 0.62 TCGA-CQ-7068-01 11 45671567 45671567 C T CHST1 Missense_Mutation p.E303K 0.60 deleterious(0) probably_damaging(1) TCGA-CQ-7068-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.40 deleterious(0.02) probably_damaging(0.989) TCGA-CQ-7068-01 11 5462199 5462199 G C OR51I1 Silent p.L182L 0.40 TCGA-CQ-7068-01 11 56043262 56043262 A G OR5T1 Missense_Mutation p.T50A 0.27 deleterious(0.01) benign(0.391) TCGA-CQ-7068-01 11 62622801 62622804 AGAA - SLC3A2 5'Flank 0.30 TCGA-CQ-7068-01 11 66618354 66618354 A G PC Missense_Mutation p.L755P 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-CQ-7068-01 11 6816910 6816910 C G OR6A2 Silent p.V10V 0.22 TCGA-CQ-7068-01 11 6891679 6891679 C T OR10A2 Missense_Mutation p.L232F 0.70 deleterious(0.01) possibly_damaging(0.582) TCGA-CQ-7068-01 11 6977464 6977464 G A ZNF215 Missense_Mutation p.R419H 0.40 tolerated(0.11) possibly_damaging(0.828) TCGA-CQ-7068-01 12 112602002 112602002 G A HECTD4 Silent p.S4058S 0.30 TCGA-CQ-7068-01 12 116972499 116972499 C T LINC00173 RNA 0.36 TCGA-CQ-7068-01 12 117595803 117595803 C A FBXO21 Silent p.L471L 0.25 TCGA-CQ-7068-01 12 128899814 128899814 C T TMEM132C Missense_Mutation p.P208L 0.42 deleterious(0) benign(0.013) TCGA-CQ-7068-01 12 53238435 53238435 C G KRT78 Missense_Mutation p.D277H 0.35 deleterious(0) probably_damaging(1) TCGA-CQ-7068-01 12 56031619 56031619 G A OR10P1 3'UTR 0.31 TCGA-CQ-7068-01 13 25266965 25266965 A G ATP12A Silent p.L442L 0.28 TCGA-CQ-7068-01 13 29855999 29855999 G A MTUS2 Missense_Mutation p.A945T 0.27 tolerated(0.05) benign(0.07) TCGA-CQ-7068-01 13 84453669 84453669 C T SLITRK1 Silent p.A658A 0.30 TCGA-CQ-7068-01 13 88329806 88329806 C T SLITRK5 Silent p.G721G 0.31 TCGA-CQ-7068-01 14 106757863 106757863 G A IGHV2-26 Silent p.L48L 0.35 TCGA-CQ-7068-01 14 57857726 57857726 T G NAA30 Silent p.P17P 0.29 TCGA-CQ-7068-01 14 92628079 92628079 C T CPSF2 Silent p.A780A 0.18 TCGA-CQ-7068-01 15 50190329 50190329 C - ATP8B4 Frame_Shift_Del p.K804Sfs*19 0.35 TCGA-CQ-7068-01 15 57731561 57731561 C T CGNL1 Missense_Mutation p.S455L 0.34 tolerated(0.22) benign(0.001) TCGA-CQ-7068-01 15 64669065 64669065 C T KIAA0101 Missense_Mutation p.R56H 0.28 tolerated(0.07) probably_damaging(0.975) TCGA-CQ-7068-01 15 81181917 81181917 G A KIAA1199 Missense_Mutation p.R357H 0.22 tolerated(0.3) benign(0.009) TCGA-CQ-7068-01 16 1657244 1657244 C A IFT140 Missense_Mutation p.Q8H 0.20 deleterious(0.04) benign(0.289) TCGA-CQ-7068-01 16 1836869 1836869 C T NUBP2 Missense_Mutation p.R83W 0.20 deleterious(0.01) possibly_damaging(0.773) TCGA-CQ-7068-01 16 46934667 46934667 G T GPT2 Missense_Mutation p.R136L 0.29 deleterious(0.03) benign(0.245) TCGA-CQ-7068-01 16 51175913 51175913 C T SALL1 Missense_Mutation p.V74I 0.31 deleterious(0.03) probably_damaging(0.99) TCGA-CQ-7068-01 16 58031659 58031659 C T ZNF319 Missense_Mutation p.E171K 0.35 tolerated(0.16) benign(0.162) TCGA-CQ-7068-01 16 65006889 65006889 C T CDH11 Silent p.E436E 0.18 TCGA-CQ-7068-01 17 2995717 2995717 T C OR1D2 Missense_Mutation p.I192V 0.25 deleterious(0.01) benign(0.111) TCGA-CQ-7068-01 17 39739633 39739633 C T KRT14 Missense_Mutation p.M376I 0.31 deleterious(0.01) benign(0.017) TCGA-CQ-7068-01 17 4351571 4351571 G A SPNS3 Missense_Mutation p.C248Y 0.48 tolerated(0.52) benign(0.016) TCGA-CQ-7068-01 18 56620896 56620896 G A ZNF532 Silent p.K1005K 0.30 TCGA-CQ-7068-01 19 11998722 11998722 A C ZNF69 5'UTR 0.36 TCGA-CQ-7068-01 19 15230101 15230101 C G ILVBL Missense_Mutation p.E309D 0.22 deleterious(0.04) possibly_damaging(0.908) TCGA-CQ-7068-01 19 21992490 21992491 - T ZNF43 Frame_Shift_Ins p.D117Rfs*3 0.24 TCGA-CQ-7068-01 19 37118156 37118156 C T ZNF382 Missense_Mutation p.L453F 0.20 tolerated(0.09) probably_damaging(1) TCGA-CQ-7068-01 19 41726662 41726662 G A AXL Nonsense_Mutation p.W69* 0.29 TCGA-CQ-7068-01 19 42351824 42351824 C T DMRTC2 Missense_Mutation p.A82V 0.56 tolerated(0.14) probably_damaging(0.953) TCGA-CQ-7068-01 19 463990 463990 C T ODF3L2 Missense_Mutation p.A242T 0.24 tolerated(1) benign(0.004) TCGA-CQ-7068-01 19 49132292 49132292 G A SPHK2 Silent p.P409P 0.27 TCGA-CQ-7068-01 19 49399725 49399725 C T TULP2 Missense_Mutation p.R58H 0.35 tolerated(0.07) probably_damaging(0.948) TCGA-CQ-7068-01 19 7601367 7601367 C T PNPLA6 Silent p.T125T 0.11 TCGA-CQ-7068-01 19 9204511 9204511 C T OR1M1 Silent p.I197I 0.24 TCGA-CQ-7068-01 1 110655410 110655410 C T UBL4B Missense_Mutation p.P85L 0.27 deleterious(0.02) benign(0.043) TCGA-CQ-7068-01 1 151204248 151204248 C G PIP5K1A Missense_Mutation p.F113L 0.33 deleterious(0) possibly_damaging(0.598) TCGA-CQ-7068-01 1 151688428 151688428 C G CELF3 Silent p.L23L 0.12 TCGA-CQ-7068-01 1 158669812 158669812 C T OR6K2 Missense_Mutation p.A211T 0.31 tolerated(1) benign(0.02) TCGA-CQ-7068-01 1 159162470 159162470 C G CADM3 Nonsense_Mutation p.S145* 0.36 TCGA-CQ-7068-01 1 185815164 185815164 G T HMCN1 Missense_Mutation p.G92V 0.18 probably_damaging(0.999) TCGA-CQ-7068-01 1 209969813 209969813 G A IRF6 Missense_Mutation p.L87F 0.32 deleterious(0) probably_damaging(1) TCGA-CQ-7068-01 1 228295553 228295553 G A MRPL55 Missense_Mutation p.T51I 0.24 tolerated_low_confidence(0.9) benign(0.007) TCGA-CQ-7068-01 1 236141094 236141094 C T NID1 3'UTR 0.23 TCGA-CQ-7068-01 1 248436971 248436971 C A OR2T33 Missense_Mutation p.W49L 0.29 tolerated(1) benign(0) TCGA-CQ-7068-01 1 32207757 32207757 C T BAI2 Silent p.G438G 0.35 TCGA-CQ-7068-01 1 6524760 6524760 C G TNFRSF25 Missense_Mutation p.E105D 0.40 tolerated(0.07) benign(0.062) TCGA-CQ-7068-01 1 66070790 66070790 G C LEPR Missense_Mutation p.Q491H 0.28 deleterious(0) probably_damaging(0.933) TCGA-CQ-7068-01 20 52644969 52644969 C T BCAS1 Missense_Mutation p.G229S 0.26 deleterious(0.01) probably_damaging(0.939) TCGA-CQ-7068-01 22 24035110 24035110 G A RGL4 Missense_Mutation p.E210K 0.20 deleterious(0.01) possibly_damaging(0.694) TCGA-CQ-7068-01 22 24943916 24943916 C A GUCD1 Missense_Mutation p.C85F 0.35 tolerated(0.22) benign(0.02) TCGA-CQ-7068-01 22 41360103 41360103 C T RBX1 Silent p.V70V 0.27 TCGA-CQ-7068-01 2 111419371 111419371 C T BUB1 Silent p.L335L 0.32 TCGA-CQ-7068-01 2 128262665 128262665 G A IWS1 Nonsense_Mutation p.R272* 0.33 TCGA-CQ-7068-01 2 168103818 168103818 C A XIRP2 Missense_Mutation p.N1972K 0.36 benign(0.076) TCGA-CQ-7068-01 2 179509293 179509293 C T TTN Missense_Mutation p.E13487K 0.31 TCGA-CQ-7068-01 2 179529198 179529198 A G TTN Missense_Mutation p.V12090A 0.33 TCGA-CQ-7068-01 2 179549471 179549471 C T TTN Missense_Mutation p.E10854K 0.31 TCGA-CQ-7068-01 2 202149659 202149659 A G CASP8 Missense_Mutation p.D367G 0.62 deleterious(0) probably_damaging(1) TCGA-CQ-7068-01 2 21233458 21233458 G A APOB Silent p.N2094N 0.20 TCGA-CQ-7068-01 2 220439822 220439822 T C INHA Silent p.S225S 0.64 TCGA-CQ-7068-01 2 239040266 239040266 C G ESPNL Missense_Mutation p.R971G 0.66 tolerated(1) benign(0.001) TCGA-CQ-7068-01 2 24222567 24222567 G A UBXN2A Missense_Mutation p.E204K 0.32 tolerated(0.62) benign(0.297) TCGA-CQ-7068-01 2 39065051 39065051 C T DHX57 Missense_Mutation p.D822N 0.37 deleterious(0.04) probably_damaging(0.928) TCGA-CQ-7068-01 3 115395076 115395076 G C GAP43 Missense_Mutation p.E119Q 0.30 deleterious(0.03) possibly_damaging(0.5) TCGA-CQ-7068-01 3 128181438 128181438 C T DNAJB8 Silent p.S217S 0.29 TCGA-CQ-7068-01 3 185635383 185635383 A G TRA2B 3'UTR 0.17 TCGA-CQ-7068-01 3 194392825 194392825 G A LSG1 Missense_Mutation p.R23W 0.36 deleterious(0.01) possibly_damaging(0.696) TCGA-CQ-7068-01 3 39178436 39178436 C T TTC21A Missense_Mutation p.R1055C 0.14 deleterious(0) probably_damaging(1) TCGA-CQ-7068-01 3 47912526 47912526 G A MAP4 Missense_Mutation p.A879V 0.28 deleterious(0) benign(0.283) TCGA-CQ-7068-01 3 89498433 89498433 C G EPHA3 Missense_Mutation p.T802R 0.26 deleterious(0) probably_damaging(1) TCGA-CQ-7068-01 4 145035857 145035857 C T GYPA Missense_Mutation p.E141K 0.26 deleterious(0) probably_damaging(0.969) TCGA-CQ-7068-01 4 166929097 166929097 C G TLL1 Missense_Mutation p.Q272E 0.31 deleterious(0.02) benign(0.064) TCGA-CQ-7068-01 4 187086549 187086549 C A FAM149A Missense_Mutation p.S365R 0.25 tolerated(0.1) possibly_damaging(0.67) TCGA-CQ-7068-01 4 20258327 20258327 C T SLIT2 Missense_Mutation p.T71M 0.33 tolerated(0.22) possibly_damaging(0.906) TCGA-CQ-7068-01 4 30726069 30726069 C T PCDH7 Missense_Mutation p.P1009S 0.30 deleterious(0) probably_damaging(0.999) TCGA-CQ-7068-01 4 7795475 7795475 G A AFAP1 Silent p.L449L 0.23 TCGA-CQ-7068-01 5 138260216 138260216 G C CTNNA1 Missense_Mutation p.D522H 0.20 deleterious(0) probably_damaging(0.96) TCGA-CQ-7068-01 5 150723750 150723750 G A SLC36A2 Silent p.N81N 0.25 TCGA-CQ-7068-01 5 36301571 36301571 G T RANBP3L 5'UTR 0.21 TCGA-CQ-7068-01 5 56546873 56546873 G C GPBP1 Missense_Mutation p.E362D 0.24 deleterious(0.02) benign(0.102) TCGA-CQ-7068-01 5 7773108 7773108 G C ADCY2 Missense_Mutation p.E760Q 0.29 deleterious(0.02) possibly_damaging(0.786) TCGA-CQ-7068-01 6 10556695 10556695 C G GCNT2 Intron 0.24 TCGA-CQ-7068-01 6 107390676 107390676 G A BEND3 Silent p.F573F 0.39 TCGA-CQ-7068-01 6 136687111 136687111 C T MAP7 Silent p.P367P 0.26 TCGA-CQ-7068-01 6 28871933 28871933 G A TRIM27 Missense_Mutation p.P486S 0.24 deleterious(0.01) probably_damaging(0.926) TCGA-CQ-7068-01 6 42224469 42224469 C T TRERF1 Silent p.V859V 0.28 TCGA-CQ-7068-01 6 72889449 72889449 C T RIMS1 Nonsense_Mutation p.R215* 0.22 TCGA-CQ-7068-01 7 106826299 106826299 G A HBP1 Missense_Mutation p.R151H 0.38 deleterious(0) probably_damaging(0.98) TCGA-CQ-7068-01 7 150695737 150695737 G A NOS3 Missense_Mutation p.R262Q 0.25 tolerated(0.05) benign(0.003) TCGA-CQ-7068-01 7 155599120 155599120 G A SHH Silent p.R144R 0.39 TCGA-CQ-7068-01 7 72685632 72685633 - TAC GTF2IRD2P1 RNA 0.22 TCGA-CQ-7068-01 7 74239555 74239556 - TAC GTF2IRD2 In_Frame_Ins p.V88dup 0.11 TCGA-CQ-7068-01 7 99015197 99015197 G A BUD31 Silent p.V121V 0.10 TCGA-CQ-7068-01 7 99580934 99580934 G A AZGP1P1 RNA 0.30 TCGA-CQ-7068-01 8 105393527 105393527 G C DPYS Missense_Mutation p.P487A 0.20 tolerated(0.7) benign(0) TCGA-CQ-7068-01 8 119123160 119123160 A T EXT1 Silent p.G42G 0.19 TCGA-CQ-7068-01 8 136659335 136659335 G C KHDRBS3 3'UTR 0.17 TCGA-CQ-7068-01 8 139268962 139268962 A G FAM135B Missense_Mutation p.V113A 0.10 deleterious(0) possibly_damaging(0.507) TCGA-CQ-7068-01 8 141370156 141370156 C G TRAPPC9 Silent p.S594S 0.21 TCGA-CQ-7068-01 8 144992793 144992793 G A PLEC Silent p.F3869F 0.23 TCGA-CQ-7068-01 8 52469422 52469422 C A PXDNL Nonsense_Mutation p.G120* 0.21 TCGA-CQ-7068-01 8 92350418 92350418 A - SLC26A7 Frame_Shift_Del p.N280Tfs*5 0.20 TCGA-CQ-7068-01 8 9564372 9564372 G A TNKS Missense_Mutation p.E441K 0.23 deleterious(0.02) probably_damaging(1) TCGA-CQ-7068-01 9 100071844 100071844 G A CCDC180 Missense_Mutation p.S117N 0.24 tolerated(0.16) benign(0.434) TCGA-CQ-7068-01 9 113734427 113734427 C A LPAR1 5'UTR 0.18 TCGA-CQ-7068-01 9 129596134 129596134 C T ZBTB43 Missense_Mutation p.S449F 0.23 tolerated(0.07) possibly_damaging(0.871) TCGA-CQ-7068-01 9 139311437 139311437 G A PMPCA Missense_Mutation p.R223H 0.18 deleterious(0) probably_damaging(0.987) TCGA-CQ-7068-01 9 139912245 139912245 G C ABCA2 Silent p.L735L 0.24 TCGA-CQ-7068-01 9 35720835 35720835 C T TLN1 Missense_Mutation p.G394S 0.09 deleterious(0) probably_damaging(1) TCGA-CQ-7068-01 9 84605930 84605930 A T SPATA31D1 Missense_Mutation p.E182V 0.25 tolerated(0.14) possibly_damaging(0.514) TCGA-CQ-7068-01 9 94173019 94173019 G C NFIL3 5'UTR 0.22 TCGA-CQ-7068-01 9 97369181 97369181 A G FBP1 Silent p.G207G 0.45 TCGA-CQ-7068-01 X 130416550 130416550 C T IGSF1 Missense_Mutation p.D372N 0.57 tolerated(0.53) benign(0.001) TCGA-CQ-7068-01 X 146340318 146340318 T A MIR509-2 RNA 0.36 TCGA-CQ-7068-01 X 152813447 152813447 C T ATP2B3 Silent p.I371I 0.34 TCGA-CQ-7068-01 X 37026576 37026576 G A FAM47C Silent p.A31A 0.50 TCGA-CQ-7068-01 X 52825613 52825613 G C SPANXN5 Missense_Mutation p.T45R 0.06 tolerated(0.07) possibly_damaging(0.65) TCGA-CQ-7068-01 X 53563194 53563194 C T HUWE1 Missense_Mutation p.E4149K 0.30 unknown(0) TCGA-CQ-7068-01 X 57935195 57935196 AG - ZXDA Frame_Shift_Del p.F554Hfs*12 0.26 TCGA-CQ-7068-01 X 85302517 85302517 G A CHM Missense_Mutation p.S7L 0.64 deleterious(0.01) possibly_damaging(0.573) TCGA-CQ-7069-01 10 101961844 101961844 C T CHUK Splice_Site p.X523_splice 0.31 TCGA-CQ-7069-01 10 64960345 64960345 C T JMJD1C Missense_Mutation p.E1723K 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-7069-01 11 119050915 119050915 G A NLRX1 Missense_Mutation p.E729K 0.23 tolerated(0.14) probably_damaging(0.993) TCGA-CQ-7069-01 11 55563802 55563802 C G OR5D14 Missense_Mutation p.I257M 0.22 deleterious(0) possibly_damaging(0.855) TCGA-CQ-7069-01 11 5626677 5626677 G C TRIM6 Missense_Mutation p.K238N 0.26 tolerated(0.25) possibly_damaging(0.634) TCGA-CQ-7069-01 11 58125894 58125894 G A OR5B17 Silent p.L217L 0.19 TCGA-CQ-7069-01 11 63999401 63999401 G A DNAJC4 Missense_Mutation p.E49K 0.30 deleterious(0.04) possibly_damaging(0.708) TCGA-CQ-7069-01 11 65156899 65156899 G - FRMD8 Frame_Shift_Del p.L52Sfs*37 0.15 TCGA-CQ-7069-01 11 8494819 8494819 G C STK33 Nonsense_Mutation p.S77* 0.29 TCGA-CQ-7069-01 12 100452246 100452246 C G UHRF1BP1L Missense_Mutation p.D937H 0.08 deleterious(0.03) probably_damaging(0.928) TCGA-CQ-7069-01 12 125561121 125561121 C T AACS Missense_Mutation p.H108Y 0.33 tolerated(0.64) benign(0.02) TCGA-CQ-7069-01 12 57919632 57919632 C G MBD6 Missense_Mutation p.T294S 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-CQ-7069-01 12 72863624 72863624 C T TRHDE Missense_Mutation p.P423S 0.17 deleterious(0.04) possibly_damaging(0.573) TCGA-CQ-7069-01 12 88584309 88584309 G A TMTC3 Missense_Mutation p.R539Q 0.23 tolerated(0.53) benign(0.017) TCGA-CQ-7069-01 13 32981423 32981423 G A N4BP2L1 Silent p.N120N 0.16 TCGA-CQ-7069-01 13 48955544 48955544 G A RB1 Missense_Mutation p.E554K 0.18 deleterious(0) probably_damaging(1) TCGA-CQ-7069-01 13 52960272 52960272 C A THSD1 Silent p.G357G 0.15 TCGA-CQ-7069-01 14 60923726 60923726 C T C14orf39 Missense_Mutation p.E423K 0.23 tolerated(0.31) possibly_damaging(0.801) TCGA-CQ-7069-01 15 100269687 100269687 C G LYSMD4 Missense_Mutation p.E179Q 0.23 tolerated(0.09) possibly_damaging(0.61) TCGA-CQ-7069-01 15 35192847 35192847 G C AQR Missense_Mutation p.P740R 0.17 tolerated(0.23) benign(0.284) TCGA-CQ-7069-01 15 35261749 35261749 G C AQR Missense_Mutation p.F22L 0.19 tolerated(0.64) benign(0.007) TCGA-CQ-7069-01 15 40005666 40005666 C T FSIP1 Silent p.L389L 0.17 TCGA-CQ-7069-01 15 49052436 49052436 G A CEP152 Nonsense_Mutation p.Q864* 0.23 TCGA-CQ-7069-01 15 91306333 91306333 G C BLM Missense_Mutation p.E674Q 0.24 tolerated(0.06) probably_damaging(0.98) TCGA-CQ-7069-01 16 4242493 4242493 G A SRL Silent p.F361F 0.26 TCGA-CQ-7069-01 16 69711109 69711109 C T NFAT5 Missense_Mutation p.H521Y 0.08 probably_damaging(0.995) TCGA-CQ-7069-01 16 69711219 69711219 C T NFAT5 Silent p.F557F 0.10 TCGA-CQ-7069-01 16 71789968 71789968 C G AP1G1 Missense_Mutation p.E398Q 0.11 deleterious(0) possibly_damaging(0.827) TCGA-CQ-7069-01 16 74486032 74486032 G C GLG1 Intron 0.15 TCGA-CQ-7069-01 16 87445945 87445945 A G ZCCHC14 Silent p.C657C 0.17 TCGA-CQ-7069-01 17 11597683 11597683 G C DNAH9 Missense_Mutation p.K1597N 0.31 probably_damaging(1) TCGA-CQ-7069-01 17 18653345 18653345 G C FBXW10 Silent p.L298L 0.33 TCGA-CQ-7069-01 17 67260974 67260974 C G ABCA5 Missense_Mutation p.D1073H 0.22 deleterious(0) probably_damaging(0.967) TCGA-CQ-7069-01 17 7577111 7577112 - CACAAA TP53 In_Frame_Ins p.V274_C275dup 0.23 TCGA-CQ-7069-01 19 15291056 15291056 C G NOTCH3 Missense_Mutation p.E1052Q 0.16 tolerated(0.22) possibly_damaging(0.531) TCGA-CQ-7069-01 19 31039157 31039157 T G ZNF536 Silent p.S877S 0.32 TCGA-CQ-7069-01 19 34856261 34856261 C T GPI Silent p.F69F 0.11 TCGA-CQ-7069-01 19 36335218 36335218 C G NPHS1 Intron 0.45 TCGA-CQ-7069-01 19 38943578 38943578 C G RYR1 Missense_Mutation p.S455C 0.22 probably_damaging(0.95) TCGA-CQ-7069-01 1 152277137 152277137 G A FLG Nonsense_Mutation p.R3409* 0.27 TCGA-CQ-7069-01 1 159752122 159752122 G A DUSP23 Silent p.T149T 0.27 TCGA-CQ-7069-01 1 16475112 16475112 C T EPHA2 Missense_Mutation p.R195H 0.07 deleterious(0) probably_damaging(0.976) TCGA-CQ-7069-01 1 190067866 190067866 G A BRINP3 Missense_Mutation p.S528F 0.11 deleterious(0.01) possibly_damaging(0.726) TCGA-CQ-7069-01 1 19062154 19062154 C T PAX7 Missense_Mutation p.A395V 0.09 deleterious_low_confidence(0.01) benign(0.359) TCGA-CQ-7069-01 1 200550364 200550364 G C KIF14 Missense_Mutation p.I1100M 0.24 deleterious(0) probably_damaging(0.999) TCGA-CQ-7069-01 1 215848631 215848631 C T USH2A Missense_Mutation p.D4208N 0.15 benign(0.013) TCGA-CQ-7069-01 1 226349308 226349308 C T ACBD3 Missense_Mutation p.E218K 0.16 tolerated(0.08) benign(0.292) TCGA-CQ-7069-01 1 227381593 227381593 G C CDC42BPA Missense_Mutation p.L165V 0.35 deleterious(0) probably_damaging(0.996) TCGA-CQ-7069-01 1 26104778 26104778 G A MAN1C1 Silent p.Q480Q 0.30 TCGA-CQ-7069-01 1 67786090 67786090 G T IL12RB2 Missense_Mutation p.M13I 0.13 tolerated(1) benign(0) TCGA-CQ-7069-01 20 17943558 17943558 C A SNX5 Intron 0.17 TCGA-CQ-7069-01 20 23476645 23476645 T A CST8 3'UTR 0.21 TCGA-CQ-7069-01 20 45315243 45315243 G C TP53RK 3'UTR 0.18 TCGA-CQ-7069-01 20 50701539 50701539 C G ZFP64 Missense_Mutation p.E499Q 0.20 tolerated(0.25) benign(0.006) TCGA-CQ-7069-01 22 24468356 24468356 C G CABIN1 Missense_Mutation p.S843C 0.25 deleterious(0.05) possibly_damaging(0.759) TCGA-CQ-7069-01 22 50301453 50301453 G A ALG12 Missense_Mutation p.S303F 0.21 probably_damaging(0.998) TCGA-CQ-7069-01 2 105979872 105979872 G A FHL2 Silent p.F186F 0.11 TCGA-CQ-7069-01 2 125261982 125261982 G A CNTNAP5 Silent p.V391V 0.06 TCGA-CQ-7069-01 2 128482013 128482013 C G WDR33 Missense_Mutation p.E364Q 0.17 deleterious(0.02) unknown(0) TCGA-CQ-7069-01 2 130725787 130725787 G A RAB6C-AS1 RNA 0.14 TCGA-CQ-7069-01 2 168102167 168102167 G C XIRP2 Missense_Mutation p.R1422T 0.14 benign(0.001) TCGA-CQ-7069-01 2 17912391 17912391 G A SMC6 Missense_Mutation p.T166M 0.07 deleterious(0) possibly_damaging(0.836) TCGA-CQ-7069-01 2 179444520 179444520 A G TTN Silent p.C22468C 0.14 TCGA-CQ-7069-01 2 20402348 20402348 G A SDC1 3'UTR 0.42 TCGA-CQ-7069-01 2 207345997 207345997 C T ADAM23 Silent p.F158F 0.25 TCGA-CQ-7069-01 2 219508100 219508100 C G ZNF142 Missense_Mutation p.E1047Q 0.34 tolerated(0.09) benign(0.403) TCGA-CQ-7069-01 2 28634938 28634951 CCAGCCCCTGGGCT - FOSL2 Frame_Shift_Del p.P202Afs*52 0.43 TCGA-CQ-7069-01 3 113697072 113697072 G T KIAA1407 Missense_Mutation p.S856Y 0.24 tolerated(0.57) benign(0.033) TCGA-CQ-7069-01 3 129290645 129290645 G T PLXND1 Silent p.A1040A 0.31 TCGA-CQ-7069-01 3 142268991 142268991 G T ATR Missense_Mutation p.L987I 0.17 tolerated(0.13) possibly_damaging(0.716) TCGA-CQ-7069-01 3 142840967 142840967 C T CHST2 Missense_Mutation p.R437W 0.19 deleterious(0) probably_damaging(0.987) TCGA-CQ-7069-01 3 5025010 5025010 G A BHLHE40 Missense_Mutation p.R291Q 0.05 deleterious(0) probably_damaging(0.975) TCGA-CQ-7069-01 4 166159977 166159977 G A KLHL2 Missense_Mutation p.D107N 0.14 tolerated(0.06) probably_damaging(0.976) TCGA-CQ-7069-01 4 2160929 2160929 G C POLN Missense_Mutation p.L522V 0.23 deleterious(0.01) possibly_damaging(0.764) TCGA-CQ-7069-01 4 81123447 81123447 C T PRDM8 Silent p.C277C 0.33 TCGA-CQ-7069-01 4 88016103 88016103 C G AFF1 Missense_Mutation p.S422C 0.31 deleterious(0) probably_damaging(0.997) TCGA-CQ-7069-01 5 140263296 140263296 C T PCDHA13 Silent p.D481D 0.17 TCGA-CQ-7069-01 5 179193111 179193111 C G MAML1 Nonsense_Mutation p.S367* 0.21 TCGA-CQ-7069-01 6 107655427 107655427 C T PDSS2 Missense_Mutation p.D136N 0.21 tolerated(0.1) benign(0.071) TCGA-CQ-7069-01 6 117678014 117678014 G C ROS1 Missense_Mutation p.H1307D 0.17 tolerated(0.69) benign(0) TCGA-CQ-7069-01 6 134492849 134492849 G C SGK1 Missense_Mutation p.H365D 0.22 tolerated(0.17) benign(0.318) TCGA-CQ-7069-01 6 1391351 1391351 C G FOXF2 Nonsense_Mutation p.S390* 0.16 TCGA-CQ-7069-01 6 165715172 165715172 G A C6orf118 Silent p.D213D 0.19 TCGA-CQ-7069-01 6 24505178 24505178 G A ALDH5A1 Missense_Mutation p.E231K 0.25 deleterious(0.03) probably_damaging(0.994) TCGA-CQ-7069-01 6 25500420 25500420 A T LRRC16A Missense_Mutation p.N451I 0.26 deleterious(0) probably_damaging(0.999) TCGA-CQ-7069-01 6 28554443 28554443 C T SCAND3 Missense_Mutation p.E18K 0.15 tolerated_low_confidence(0.14) benign(0.022) TCGA-CQ-7069-01 6 31734437 31734437 C G VWA7 Missense_Mutation p.E663Q 0.15 tolerated(0.25) benign(0.006) TCGA-CQ-7069-01 6 33232217 33232217 C T VPS52 Missense_Mutation p.M486I 0.17 tolerated(0.08) benign(0.216) TCGA-CQ-7069-01 6 35438014 35438014 C G RPL10A Missense_Mutation p.I123M 0.11 deleterious(0) possibly_damaging(0.806) TCGA-CQ-7069-01 6 43481347 43481347 G C YIPF3 Missense_Mutation p.I140M 0.21 tolerated(0.1) benign(0.019) TCGA-CQ-7069-01 6 43639527 43639527 G C MRPS18A Nonsense_Mutation p.S188* 0.15 TCGA-CQ-7069-01 6 45909312 45909312 G C CLIC5 Missense_Mutation p.I285M 0.25 deleterious(0) probably_damaging(0.996) TCGA-CQ-7069-01 6 75892796 75892796 C G COL12A1 Missense_Mutation p.E621Q 0.26 probably_damaging(0.993) TCGA-CQ-7069-01 7 102572360 102572360 C G FBXL13 Missense_Mutation p.E249Q 0.20 deleterious(0.01) probably_damaging(0.936) TCGA-CQ-7069-01 7 102669089 102669089 G C FBXL13 Missense_Mutation p.H59D 0.31 tolerated(0.52) benign(0.028) TCGA-CQ-7069-01 7 142001029 142001029 C T TRBV2 Missense_Mutation p.H8Y 0.19 TCGA-CQ-7069-01 7 48428790 48428790 C T ABCA13 Missense_Mutation p.T3876I 0.25 probably_damaging(0.974) TCGA-CQ-7069-01 7 63709405 63709405 G C ZNF679 Splice_Site 0.26 TCGA-CQ-7069-01 7 72951583 72951583 G A BCL7B 3'UTR 0.21 TCGA-CQ-7069-01 7 8791010 8791010 G C NXPH1 Missense_Mutation p.D143H 0.26 deleterious(0) probably_damaging(1) TCGA-CQ-7069-01 8 109465348 109465348 A G EMC2 Missense_Mutation p.T93A 0.15 tolerated(0.34) benign(0) TCGA-CQ-7069-01 8 144732088 144732088 G A ZNF623 Missense_Mutation p.E16K 0.23 tolerated_low_confidence(0.12) benign(0.001) TCGA-CQ-7069-01 8 144732347 144732347 G A ZNF623 Missense_Mutation p.R102K 0.22 tolerated(1) benign(0.005) TCGA-CQ-7069-01 8 144945596 144945596 G A EPPK1 Missense_Mutation p.T609M 0.33 probably_damaging(0.999) TCGA-CQ-7069-01 8 145001694 145001694 C T PLEC Missense_Mutation p.E1351K 0.14 unknown(0) TCGA-CQ-7069-01 8 145617301 145617301 G A ADCK5 Missense_Mutation p.R369Q 0.14 deleterious(0.02) probably_damaging(0.954) TCGA-CQ-7069-01 9 130501101 130501101 C T SH2D3C Missense_Mutation p.R836H 0.31 deleterious(0) probably_damaging(0.999) TCGA-CQ-7069-01 X 135429020 135429020 C G GPR112 Nonsense_Mutation p.S1052* 0.24 TCGA-CQ-7069-01 X 135432497 135432497 C T GPR112 Missense_Mutation p.P2211L 0.23 tolerated(1) benign(0) TCGA-CQ-7069-01 X 152988622 152988622 G A BCAP31 Silent p.F93F 0.23 TCGA-CQ-7069-01 X 26158052 26158052 G C MAGEB18 Missense_Mutation p.R317T 0.22 tolerated(0.14) probably_damaging(0.96) TCGA-CQ-7069-01 X 47498684 47498684 G T ELK1 Nonsense_Mutation p.Y88* 0.21 TCGA-CQ-7069-01 X 48544018 48544018 G C WAS Missense_Mutation p.G119A 0.21 tolerated(0.38) possibly_damaging(0.59) TCGA-CQ-7069-01 X 73066583 73066583 G A XIST RNA 0.25 TCGA-CQ-7069-01 X 86890598 86890598 G T KLHL4 Missense_Mutation p.C583F 0.24 deleterious(0.01) probably_damaging(1) TCGA-CQ-7071-01 10 104163154 104163154 G A PSD Missense_Mutation p.R960W 0.25 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 10 114925636 114925636 A G TCF7L2 Missense_Mutation p.I572V 0.25 tolerated_low_confidence(0.09) benign(0.001) TCGA-CQ-7071-01 10 118385516 118385516 G C PNLIPRP2 Missense_Mutation p.K88N 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-CQ-7071-01 10 11990454 11990454 C G UPF2 Missense_Mutation p.E1030Q 0.40 tolerated(0.32) probably_damaging(0.982) TCGA-CQ-7071-01 10 12006125 12006125 C T UPF2 Splice_Site p.X690_splice 0.23 TCGA-CQ-7071-01 10 13333884 13333884 C G PHYH Missense_Mutation p.G148A 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-7071-01 10 134006208 134006208 G A DPYSL4 Missense_Mutation p.D59N 0.25 deleterious(0.02) possibly_damaging(0.576) TCGA-CQ-7071-01 10 134896287 134896287 G C GPR123-AS1 3'Flank 0.39 TCGA-CQ-7071-01 10 15255015 15255015 C G FAM171A1 Missense_Mutation p.E858Q 0.28 tolerated(0.19) benign(0.061) TCGA-CQ-7071-01 10 25312196 25312197 AG - THNSL1 Frame_Shift_Del p.K16Mfs*4 0.19 TCGA-CQ-7071-01 10 26581864 26581864 C T GAD2 Missense_Mutation p.P510S 0.28 deleterious(0) probably_damaging(0.996) TCGA-CQ-7071-01 10 27436309 27436309 G A YME1L1 Intron 0.20 TCGA-CQ-7071-01 10 27826858 27826858 G A RAB18 Missense_Mutation p.E167K 0.23 tolerated(0.66) benign(0.169) TCGA-CQ-7071-01 10 30318246 30318246 C T KIAA1462 Silent p.K277K 0.20 TCGA-CQ-7071-01 10 48388538 48388538 G A RBP3 Silent p.I780I 0.28 TCGA-CQ-7071-01 10 55626420 55626420 G A PCDH15 Silent p.S1233S 0.23 TCGA-CQ-7071-01 10 61828923 61828923 A T ANK3 Missense_Mutation p.C3906S 0.26 benign(0.004) TCGA-CQ-7071-01 10 73572554 73572554 C G CDH23 Silent p.V940V 0.27 TCGA-CQ-7071-01 10 75673112 75673112 G A PLAU Missense_Mutation p.E145K 0.25 tolerated(0.33) benign(0.053) TCGA-CQ-7071-01 10 86017661 86017661 C G RGR Missense_Mutation p.L219V 0.31 tolerated(0.08) benign(0.041) TCGA-CQ-7071-01 10 91137819 91137819 C G IFIT1B 5'UTR 0.15 TCGA-CQ-7071-01 10 93221090 93221090 C T HECTD2 Missense_Mutation p.P163S 0.18 tolerated(0.74) benign(0.002) TCGA-CQ-7071-01 10 93716353 93716353 C G BTAF1 Missense_Mutation p.S257C 0.37 deleterious(0.03) benign(0.325) TCGA-CQ-7071-01 10 93768955 93768955 G A BTAF1 Missense_Mutation p.E1365K 0.19 deleterious(0.02) probably_damaging(0.93) TCGA-CQ-7071-01 10 98157020 98157020 G C TLL2 Missense_Mutation p.S436C 0.32 deleterious(0) probably_damaging(0.997) TCGA-CQ-7071-01 11 1017057 1017057 G C MUC6 Missense_Mutation p.S1915C 0.08 probably_damaging(0.974) TCGA-CQ-7071-01 11 116767027 116767027 C G SIK3 Missense_Mutation p.Q211H 0.26 tolerated(0.06) possibly_damaging(0.797) TCGA-CQ-7071-01 11 1642821 1642821 G C KRTAP5-4 Nonsense_Mutation p.S168* 0.26 TCGA-CQ-7071-01 11 18500318 18500318 C T LDHAL6A Silent p.I300I 0.26 TCGA-CQ-7071-01 11 20178619 20178619 C G DBX1 Missense_Mutation p.K212N 0.19 deleterious(0.04) possibly_damaging(0.676) TCGA-CQ-7071-01 11 33738937 33738937 C T CD59 Missense_Mutation p.A50T 0.33 tolerated(0.25) benign(0.001) TCGA-CQ-7071-01 11 47259551 47259551 C T DDB2 Missense_Mutation p.S396L 0.43 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.22 deleterious(0.02) probably_damaging(0.989) TCGA-CQ-7071-01 11 55418836 55418836 C A OR4S2 Missense_Mutation p.H153N 0.32 deleterious(0) probably_damaging(0.966) TCGA-CQ-7071-01 11 56258304 56258304 T A OR5M8 Silent p.P181P 0.26 TCGA-CQ-7071-01 11 56431941 56431941 G C OR5AR1 Silent p.L260L 0.29 TCGA-CQ-7071-01 11 56468763 56468764 - A OR9G1 Frame_Shift_Ins p.L303Tfs*? 0.12 TCGA-CQ-7071-01 11 62363756 62363756 G - MTA2 Frame_Shift_Del p.T338Pfs*19 0.35 TCGA-CQ-7071-01 11 62374473 62374473 C T EML3 Silent p.R487R 0.29 TCGA-CQ-7071-01 11 62489831 62489831 C G HNRNPUL2 Missense_Mutation p.E373Q 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-CQ-7071-01 11 62543912 62543912 C A TAF6L Missense_Mutation p.F68L 0.26 tolerated(0.24) benign(0.012) TCGA-CQ-7071-01 11 6500028 6500028 C T ARFIP2 Silent p.Q159Q 0.31 TCGA-CQ-7071-01 11 65731506 65731506 C T SART1 Intron 0.30 TCGA-CQ-7071-01 11 67942577 67942577 C G SUV420H1 Missense_Mutation p.E151Q 0.22 deleterious(0.01) benign(0.108) TCGA-CQ-7071-01 11 68455511 68455511 G A GAL Missense_Mutation p.D56N 0.19 deleterious(0.02) probably_damaging(0.916) TCGA-CQ-7071-01 11 6943159 6943159 G C OR2D3 Missense_Mutation p.R309S 0.24 deleterious(0) possibly_damaging(0.901) TCGA-CQ-7071-01 11 74054047 74054047 C G PGM2L1 Missense_Mutation p.G442A 0.25 deleterious(0.05) possibly_damaging(0.45) TCGA-CQ-7071-01 11 77652273 77652273 G A INTS4 Missense_Mutation p.H315Y 0.28 deleterious(0.04) benign(0.05) TCGA-CQ-7071-01 11 7981165 7981165 G C NLRP10 3'UTR 0.21 TCGA-CQ-7071-01 11 8739320 8739320 G A ST5 Nonsense_Mutation p.Q533* 0.23 TCGA-CQ-7071-01 11 9466849 9466849 G C IPO7 3'UTR 0.33 TCGA-CQ-7071-01 12 100811824 100811824 C A SLC17A8 Missense_Mutation p.L439M 0.25 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 12 1025635 1025635 G C RAD52 Missense_Mutation p.S247C 0.38 tolerated(0.22) benign(0.005) TCGA-CQ-7071-01 12 104033919 104033919 G T STAB2 Nonsense_Mutation p.E309* 0.20 TCGA-CQ-7071-01 12 109182988 109182988 C T SSH1 Silent p.V642V 0.33 TCGA-CQ-7071-01 12 115120855 115120855 C T TBX3 Missense_Mutation p.A51T 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-CQ-7071-01 12 117768889 117768889 G C NOS1 5'Flank 0.24 TCGA-CQ-7071-01 12 1192678 1192678 G A ERC1 Missense_Mutation p.E340K 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CQ-7071-01 12 120882728 120882728 C T TRIAP1 Missense_Mutation p.E60K 0.30 tolerated(0.42) benign(0.133) TCGA-CQ-7071-01 12 120954375 120954375 C G COQ5 Missense_Mutation p.R190T 0.23 tolerated(0.67) benign(0) TCGA-CQ-7071-01 12 123201043 123201043 G T HCAR3 Missense_Mutation p.P81Q 0.34 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 12 274962 274962 C G IQSEC3 Missense_Mutation p.F959L 0.31 deleterious(0.03) possibly_damaging(0.834) TCGA-CQ-7071-01 12 27800738 27800738 G C PPFIBP1 Missense_Mutation p.R145T 0.28 deleterious(0) benign(0.121) TCGA-CQ-7071-01 12 40078724 40078724 G C C12orf40 Missense_Mutation p.D448H 0.36 deleterious(0.04) possibly_damaging(0.735) TCGA-CQ-7071-01 12 40626086 40626086 C G LRRK2 Nonsense_Mutation p.S83* 0.27 TCGA-CQ-7071-01 12 43823505 43823505 G A ADAMTS20 Missense_Mutation p.S1135L 0.36 tolerated(0.17) benign(0.001) TCGA-CQ-7071-01 12 49230515 49230515 G C DDX23 Missense_Mutation p.S358C 0.23 deleterious(0) probably_damaging(0.957) TCGA-CQ-7071-01 12 52200305 52200305 G A SCN8A Missense_Mutation p.E1679K 0.57 deleterious(0.02) benign(0.105) TCGA-CQ-7071-01 12 53346417 53346417 G C KRT18 Intron 0.23 TCGA-CQ-7071-01 12 54422559 54422559 C T HOXC6 Missense_Mutation p.S85L 0.28 tolerated(0.53) benign(0.084) TCGA-CQ-7071-01 12 56827433 56827433 C T TIMELESS Silent p.L85L 0.29 TCGA-CQ-7071-01 12 57432611 57432611 G C MYO1A Missense_Mutation p.I505M 0.14 deleterious(0) probably_damaging(0.97) TCGA-CQ-7071-01 12 57919663 57919663 G T MBD6 Silent p.L304L 0.29 TCGA-CQ-7071-01 12 58160730 58160730 G C CYP27B1 Nonsense_Mutation p.S32* 0.18 TCGA-CQ-7071-01 12 67696303 67696303 C A CAND1 Missense_Mutation p.L401I 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-CQ-7071-01 12 9303306 9303306 G A PZP Silent p.L1440L 0.28 TCGA-CQ-7071-01 13 111155623 111155623 G C COL4A2 Missense_Mutation p.E1345Q 0.27 possibly_damaging(0.728) TCGA-CQ-7071-01 13 113140342 113140342 G C TUBGCP3 Missense_Mutation p.L897V 0.50 deleterious(0.03) benign(0.36) TCGA-CQ-7071-01 13 31728851 31728851 C T HSPH1 Silent p.Q116Q 0.30 TCGA-CQ-7071-01 13 32915015 32915015 G C BRCA2 Missense_Mutation p.E2175Q 0.24 tolerated(0.07) probably_damaging(0.947) TCGA-CQ-7071-01 13 38933471 38933474 GTGA - UFM1 Splice_Site p.X64_splice 0.25 TCGA-CQ-7071-01 13 47356861 47356861 C T ESD Missense_Mutation p.D108N 0.30 tolerated(0.71) benign(0.064) TCGA-CQ-7071-01 13 49033948 49033948 G C RB1 Missense_Mutation p.M695I 0.26 tolerated(0.09) probably_damaging(0.984) TCGA-CQ-7071-01 13 53624563 53624563 C G OLFM4 Nonsense_Mutation p.S397* 0.30 TCGA-CQ-7071-01 13 67802233 67802233 C G PCDH9 Missense_Mutation p.E114Q 0.29 deleterious(0.03) probably_damaging(0.986) TCGA-CQ-7071-01 14 100820140 100820140 C G WARS Missense_Mutation p.W203C 0.16 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 14 102792787 102792787 C T ZNF839 Missense_Mutation p.R252W 0.26 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 14 103436591 103436591 G C CDC42BPB Missense_Mutation p.A631G 0.26 tolerated(0.15) benign(0.003) TCGA-CQ-7071-01 14 23303385 23303385 G A MRPL52 Missense_Mutation p.R76Q 0.35 tolerated(0.05) benign(0.417) TCGA-CQ-7071-01 14 26917690 26917690 A G NOVA1 Silent p.G333G 0.21 TCGA-CQ-7071-01 14 45542754 45542754 A G FAM179B Missense_Mutation p.N1718S 0.44 tolerated_low_confidence(0.22) benign(0.006) TCGA-CQ-7071-01 14 59112454 59112454 G A DACT1 Silent p.L371L 0.26 TCGA-CQ-7071-01 14 60194227 60194227 G A RTN1 Missense_Mutation p.P392L 0.27 tolerated(0.61) benign(0) TCGA-CQ-7071-01 14 61190283 61190283 C G SIX4 Missense_Mutation p.E170D 0.52 deleterious(0.01) probably_damaging(0.968) TCGA-CQ-7071-01 14 65007846 65007846 C T HSPA2 Silent p.F93F 0.25 TCGA-CQ-7071-01 14 68265222 68265222 G C ZFYVE26 Missense_Mutation p.S586C 0.42 tolerated(0.18) possibly_damaging(0.794) TCGA-CQ-7071-01 14 78174433 78174433 G C SLIRP 5'UTR 0.23 TCGA-CQ-7071-01 14 89327638 89327638 G C TTC8 Missense_Mutation p.E291Q 0.38 deleterious(0.01) benign(0.367) TCGA-CQ-7071-01 14 93712233 93712233 C T BTBD7 Missense_Mutation p.A841T 0.25 tolerated_low_confidence(0.69) benign(0.001) TCGA-CQ-7071-01 14 95670176 95670176 G A CLMN Nonsense_Mutation p.Q504* 0.26 TCGA-CQ-7071-01 15 101120961 101120961 G C LINS Missense_Mutation p.I29M 0.37 tolerated(0.07) possibly_damaging(0.554) TCGA-CQ-7071-01 15 34382527 34382527 C T EMC7 Missense_Mutation p.M162I 0.22 tolerated(0.09) benign(0.306) TCGA-CQ-7071-01 15 35274087 35274087 G A ZNF770 Missense_Mutation p.H517Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-CQ-7071-01 15 40093484 40093484 G T GPR176 Nonsense_Mutation p.S466* 0.26 TCGA-CQ-7071-01 15 40915073 40915073 G A CASC5 Missense_Mutation p.D897N 0.29 tolerated(0.08) probably_damaging(0.955) TCGA-CQ-7071-01 15 41762529 41762529 G A RTF1 Missense_Mutation p.D322N 0.28 tolerated(0.06) benign(0.056) TCGA-CQ-7071-01 15 43363031 43363031 C T UBR1 Nonsense_Mutation p.W207* 0.19 TCGA-CQ-7071-01 15 43991353 43991353 C G CKMT1A 3'UTR 0.19 TCGA-CQ-7071-01 15 48566825 48566825 C G SLC12A1 Missense_Mutation p.D820E 0.42 deleterious(0.02) probably_damaging(0.97) TCGA-CQ-7071-01 15 53992089 53992089 G A WDR72 Silent p.L541L 0.23 TCGA-CQ-7071-01 15 62986551 62986551 G A TLN2 Missense_Mutation p.E418K 0.28 deleterious(0) possibly_damaging(0.844) TCGA-CQ-7071-01 15 63883006 63883006 C G USP3 Missense_Mutation p.A515G 0.26 tolerated_low_confidence(0.28) benign(0.05) TCGA-CQ-7071-01 15 68583057 68583057 C G FEM1B Missense_Mutation p.S454C 0.23 tolerated(0.09) possibly_damaging(0.818) TCGA-CQ-7071-01 15 82337813 82337813 G A MEX3B Silent p.V78V 0.19 TCGA-CQ-7071-01 15 89843066 89843066 C T FANCI Missense_Mutation p.S891L 0.28 tolerated(0.19) benign(0.005) TCGA-CQ-7071-01 15 90342488 90342488 C G ANPEP Intron 0.23 TCGA-CQ-7071-01 15 93540504 93540504 C G CHD2 Silent p.V1252V 0.21 TCGA-CQ-7071-01 16 10721361 10721361 C G TEKT5 3'UTR 0.23 TCGA-CQ-7071-01 16 14307474 14307474 G A MKL2 Missense_Mutation p.E117K 0.13 deleterious(0.04) probably_damaging(0.985) TCGA-CQ-7071-01 16 14334318 14334318 G C MKL2 Missense_Mutation p.Q352H 0.16 tolerated(0.06) benign(0.106) TCGA-CQ-7071-01 16 1536008 1536008 C T PTX4 Missense_Mutation p.A452T 0.24 tolerated(0.2) possibly_damaging(0.495) TCGA-CQ-7071-01 16 19278268 19278268 C A SYT17 Nonsense_Mutation p.S432* 0.29 TCGA-CQ-7071-01 16 2164194 2164194 G A PKD1 Missense_Mutation p.R944C 0.18 probably_damaging(1) TCGA-CQ-7071-01 16 21742218 21742218 C T OTOA Silent p.F756F 0.47 TCGA-CQ-7071-01 16 2336736 2336736 C A ABCA3 Missense_Mutation p.Q1079H 0.28 deleterious(0) possibly_damaging(0.908) TCGA-CQ-7071-01 16 23383141 23383141 G A SCNN1B Silent p.V363V 0.20 TCGA-CQ-7071-01 16 23390051 23390051 C G SCNN1B Missense_Mutation p.Q477E 0.15 tolerated(0.11) benign(0.013) TCGA-CQ-7071-01 16 23417451 23417451 C G COG7 Missense_Mutation p.Q536H 0.30 tolerated(0.46) possibly_damaging(0.876) TCGA-CQ-7071-01 16 23652844 23652844 G C DCTN5 5'UTR 0.28 TCGA-CQ-7071-01 16 3790493 3790493 C T CREBBP Missense_Mutation p.R1347Q 0.26 unknown(0) TCGA-CQ-7071-01 16 50664171 50664171 G C NKD1 Missense_Mutation p.K179N 0.31 deleterious(0) possibly_damaging(0.794) TCGA-CQ-7071-01 16 58324919 58324919 G A PRSS54 Silent p.F69F 0.26 TCGA-CQ-7071-01 16 58581184 58581184 G A CNOT1 Missense_Mutation p.S1219L 0.24 deleterious(0) benign(0.23) TCGA-CQ-7071-01 16 67197675 67197675 C G FBXL8 Silent p.L359L 0.32 TCGA-CQ-7071-01 16 67912285 67912285 C G EDC4 Missense_Mutation p.H343D 0.21 deleterious(0) probably_damaging(0.996) TCGA-CQ-7071-01 16 74425456 74425456 C T NPIPB15 Silent p.L270L 0.13 TCGA-CQ-7071-01 16 89167208 89167208 C T ACSF3 Missense_Mutation p.S40L 0.24 tolerated(0.2) benign(0.014) TCGA-CQ-7071-01 16 90075219 90075219 C T DBNDD1 Missense_Mutation p.E118K 0.25 deleterious(0) probably_damaging(0.997) TCGA-CQ-7071-01 16 9934940 9934940 C T GRIN2A Missense_Mutation p.M450I 0.27 tolerated(0.45) benign(0.004) TCGA-CQ-7071-01 17 10223795 10223795 G T MYH13 Missense_Mutation p.Q1044K 0.28 deleterious(0.02) probably_damaging(0.93) TCGA-CQ-7071-01 17 10600743 10600743 C G SCO1 Missense_Mutation p.E28Q 0.52 tolerated_low_confidence(0.44) benign(0.045) TCGA-CQ-7071-01 17 15134242 15134242 G A PMP22 Missense_Mutation p.R159C 0.33 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 17 1549896 1549896 C T RILP Missense_Mutation p.R349Q 0.29 tolerated(0.4) benign(0.016) TCGA-CQ-7071-01 17 25935033 25935033 C T KSR1 Silent p.I581I 0.36 TCGA-CQ-7071-01 17 27003401 27003401 G A SUPT6H Missense_Mutation p.D284N 0.23 deleterious(0) probably_damaging(0.979) TCGA-CQ-7071-01 17 29684058 29684058 G A NF1 Missense_Mutation p.E2607K 0.33 tolerated(0.06) probably_damaging(0.952) TCGA-CQ-7071-01 17 32956042 32956042 G T TMEM132E Missense_Mutation p.G296V 0.23 tolerated(0.18) benign(0.382) TCGA-CQ-7071-01 17 33738832 33738832 G A SLFN12 Missense_Mutation p.S421L 0.32 tolerated(0.09) benign(0.095) TCGA-CQ-7071-01 17 36099454 36099454 C T HNF1B Missense_Mutation p.R174K 0.09 tolerated(0.31) benign(0.141) TCGA-CQ-7071-01 17 42635642 42635642 G C FZD2 Missense_Mutation p.E196Q 0.44 tolerated(0.36) benign(0.01) TCGA-CQ-7071-01 17 42636025 42636025 G A FZD2 Silent p.K323K 0.19 TCGA-CQ-7071-01 17 465825 465825 C T VPS53 Missense_Mutation p.E492K 0.28 tolerated(0.5) benign(0.008) TCGA-CQ-7071-01 17 48562221 48562221 G A RSAD1 Silent p.%3D 0.38 TCGA-CQ-7071-01 17 4859947 4859947 G A ENO3 Missense_Mutation p.D383N 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CQ-7071-01 17 48649309 48649309 C T CACNA1G Silent p.F219F 0.23 TCGA-CQ-7071-01 17 55926767 55926767 G A MRPS23 Missense_Mutation p.R17W 0.24 deleterious(0) probably_damaging(0.993) TCGA-CQ-7071-01 17 57751071 57751071 G C CLTC Missense_Mutation p.D786H 0.33 deleterious(0) probably_damaging(0.97) TCGA-CQ-7071-01 17 58227442 58227442 C T CA4 Missense_Mutation p.S16L 0.31 tolerated(0.79) benign(0.32) TCGA-CQ-7071-01 17 6021411 6021411 G A WSCD1 Silent p.L426L 0.24 TCGA-CQ-7071-01 17 60342423 60342423 G C TBC1D3P2 3'Flank 0.14 TCGA-CQ-7071-01 17 613847 613847 G C VPS53 Missense_Mutation p.P32A 0.34 tolerated(0.07) possibly_damaging(0.476) TCGA-CQ-7071-01 17 6515340 6515340 C T KIAA0753 Missense_Mutation p.E482K 0.25 tolerated(0.41) benign(0.012) TCGA-CQ-7071-01 17 6927875 6927875 G T BCL6B Missense_Mutation p.S186I 0.22 deleterious(0.02) possibly_damaging(0.843) TCGA-CQ-7071-01 17 7139465 7139465 C G PHF23 Missense_Mutation p.E261Q 0.24 tolerated_low_confidence(0.07) benign(0.136) TCGA-CQ-7071-01 17 72588340 72588340 A G CD300LD Translation_Start_Site p.M1? 0.33 deleterious(0.01) benign(0.017) TCGA-CQ-7071-01 17 76967881 76967881 G A LGALS3BP Missense_Mutation p.S512L 0.31 tolerated(0.18) benign(0.01) TCGA-CQ-7071-01 17 76967898 76967898 G A LGALS3BP Silent p.L506L 0.30 TCGA-CQ-7071-01 17 7736828 7736828 C G DNAH2 Missense_Mutation p.L4421V 0.24 probably_damaging(0.939) TCGA-CQ-7071-01 17 8647848 8647848 A G CCDC42 Missense_Mutation p.L27P 0.18 deleterious(0.01) possibly_damaging(0.883) TCGA-CQ-7071-01 18 18549116 18549116 C G ROCK1 Missense_Mutation p.E958D 0.15 tolerated(0.08) benign(0.17) TCGA-CQ-7071-01 18 18608840 18608840 C T ROCK1 Missense_Mutation p.D370N 0.33 deleterious(0) probably_damaging(0.909) TCGA-CQ-7071-01 18 18608843 18608843 C T ROCK1 Missense_Mutation p.D369N 0.34 deleterious(0) probably_damaging(0.945) TCGA-CQ-7071-01 18 2892385 2892385 G C EMILIN2 Missense_Mutation p.D754H 0.36 deleterious(0) probably_damaging(0.973) TCGA-CQ-7071-01 18 43510760 43510760 G A EPG5 Missense_Mutation p.S765F 0.30 deleterious(0.04) probably_damaging(0.983) TCGA-CQ-7071-01 18 56585722 56585722 T C ZNF532 Missense_Mutation p.V68A 0.29 deleterious(0.02) benign(0.311) TCGA-CQ-7071-01 18 56586482 56586482 C T ZNF532 Silent p.I321I 0.22 TCGA-CQ-7071-01 18 56587240 56587240 C T ZNF532 Missense_Mutation p.S574L 0.24 deleterious(0.02) benign(0.154) TCGA-CQ-7071-01 19 10506687 10506687 C G CDC37 Missense_Mutation p.E99Q 0.20 tolerated(0.34) benign(0.029) TCGA-CQ-7071-01 19 11559946 11559946 G A PRKCSH Missense_Mutation p.E466K 0.27 tolerated(0.06) possibly_damaging(0.771) TCGA-CQ-7071-01 19 11943217 11943217 C G ZNF440 Nonsense_Mutation p.S409* 0.26 TCGA-CQ-7071-01 19 11944683 11944683 C G ZNF440 3'UTR 0.20 TCGA-CQ-7071-01 19 12089178 12089178 C G ZNF763 Missense_Mutation p.Q150E 0.21 deleterious(0.02) benign(0.013) TCGA-CQ-7071-01 19 12089293 12089293 C T ZNF763 Missense_Mutation p.S188L 0.26 deleterious(0.02) benign(0.06) TCGA-CQ-7071-01 19 1221325 1221325 C T STK11 Missense_Mutation p.S283F 0.30 deleterious(0.02) probably_damaging(0.949) TCGA-CQ-7071-01 19 15535124 15535124 C T WIZ Missense_Mutation p.D699N 0.37 deleterious(0.02) benign(0.341) TCGA-CQ-7071-01 19 17213220 17213220 G A MYO9B Silent p.V231V 0.31 TCGA-CQ-7071-01 19 17837872 17837872 C T MAP1S Missense_Mutation p.P560L 0.33 deleterious(0.01) benign(0.001) TCGA-CQ-7071-01 19 19905518 19905518 C G ZNF506 Missense_Mutation p.G393A 0.26 deleterious(0) possibly_damaging(0.864) TCGA-CQ-7071-01 19 21608479 21608479 G T ZNF493 3'UTR 0.38 TCGA-CQ-7071-01 19 22154795 22154795 G A ZNF208 Missense_Mutation p.S1014L 0.31 deleterious(0.01) possibly_damaging(0.814) TCGA-CQ-7071-01 19 23836960 23836960 C T ZNF675 Missense_Mutation p.E259K 0.36 tolerated(0.07) probably_damaging(0.995) TCGA-CQ-7071-01 19 2432468 2432468 C G LMNB2 Missense_Mutation p.E512D 0.26 tolerated(0.53) benign(0.011) TCGA-CQ-7071-01 19 34262945 34262945 G A CHST8 Silent p.P84P 0.26 TCGA-CQ-7071-01 19 34791287 34791287 A G KIAA0355 5'UTR 0.38 TCGA-CQ-7071-01 19 38230909 38230909 G T ZNF573 Missense_Mutation p.P161H 0.25 deleterious(0.04) possibly_damaging(0.603) TCGA-CQ-7071-01 19 38979979 38979979 G A RYR1 Missense_Mutation p.E1904K 0.32 benign(0.004) TCGA-CQ-7071-01 19 39369868 39369868 G A SIRT2 Missense_Mutation p.S366L 0.27 tolerated(0.17) benign(0.03) TCGA-CQ-7071-01 19 3983259 3983259 C T EEF2 Silent p.E83E 0.27 TCGA-CQ-7071-01 19 39882005 39882005 G A MED29 Silent p.L2L 0.25 TCGA-CQ-7071-01 19 4224440 4224440 G C ANKRD24 Missense_Mutation p.D1127H 0.42 deleterious(0) probably_damaging(0.997) TCGA-CQ-7071-01 19 43359832 43359832 G C PSG10P 5'Flank 0.25 TCGA-CQ-7071-01 19 44791652 44791652 G A ZNF235 Nonsense_Mutation p.Q646* 0.28 TCGA-CQ-7071-01 19 4510825 4510825 G C PLIN4 Silent p.L1035L 0.15 TCGA-CQ-7071-01 19 45391565 45391565 C T PVRL2 Silent p.L516L 0.21 TCGA-CQ-7071-01 19 4714208 4714208 G A DPP9 Silent p.I66I 0.29 TCGA-CQ-7071-01 19 49131786 49131786 C T SPHK2 Intron 0.08 TCGA-CQ-7071-01 19 50215191 50215191 C T CPT1C Silent p.L664L 0.28 TCGA-CQ-7071-01 19 51274484 51274484 C A GPR32 Silent p.V209V 0.09 TCGA-CQ-7071-01 19 52130854 52130854 G C SIGLEC5 Missense_Mutation p.F381L 0.25 tolerated(0.42) benign(0.026) TCGA-CQ-7071-01 19 54377298 54377298 T C MYADM Missense_Mutation p.V172A 0.28 tolerated(0.05) possibly_damaging(0.507) TCGA-CQ-7071-01 19 55715379 55715379 C G PTPRH Missense_Mutation p.Q219H 0.21 unknown(0) TCGA-CQ-7071-01 19 56895260 56895260 C T ZNF582 Missense_Mutation p.G509E 0.33 tolerated(0.21) probably_damaging(0.998) TCGA-CQ-7071-01 19 58384327 58384327 C T ZNF814 Missense_Mutation p.E811K 0.23 tolerated(0.97) benign(0) TCGA-CQ-7071-01 19 58718244 58718244 G C ZNF274 Silent p.L138L 0.27 TCGA-CQ-7071-01 19 6389541 6389541 C G GTF2F1 Silent p.R80R 0.24 TCGA-CQ-7071-01 19 7527213 7527216 GAGC - ARHGEF18 Frame_Shift_Del p.S689Rfs*8 0.26 TCGA-CQ-7071-01 19 7601351 7601351 C T PNPLA6 Missense_Mutation p.S120F 0.27 tolerated(0.09) benign(0.067) TCGA-CQ-7071-01 19 7607554 7607554 C G PNPLA6 Missense_Mutation p.R463G 0.27 tolerated(0.18) benign(0.013) TCGA-CQ-7071-01 1 101198225 101198225 G A VCAM1 Missense_Mutation p.E593K 0.24 tolerated(0.29) benign(0.12) TCGA-CQ-7071-01 1 101377785 101377785 C T SLC30A7 Missense_Mutation p.H168Y 0.29 tolerated(0.16) probably_damaging(0.993) TCGA-CQ-7071-01 1 109969017 109969017 C G PSMA5 5'Flank 0.29 TCGA-CQ-7071-01 1 110152749 110152749 G A GNAT2 Silent p.I72I 0.24 TCGA-CQ-7071-01 1 110279755 110279755 G T GSTM3 Missense_Mutation p.Q206K 0.12 tolerated(0.25) benign(0) TCGA-CQ-7071-01 1 114201756 114201756 G A MAGI3 Missense_Mutation p.G895E 0.29 deleterious(0) probably_damaging(0.993) TCGA-CQ-7071-01 1 117699237 117699237 G C VTCN1 Missense_Mutation p.S135C 0.19 deleterious(0) probably_damaging(0.987) TCGA-CQ-7071-01 1 12172069 12172069 G C TNFRSF8 Missense_Mutation p.R264P 0.24 tolerated(0.09) benign(0.036) TCGA-CQ-7071-01 1 13910286 13910286 C G PDPN 5'UTR 0.31 TCGA-CQ-7071-01 1 13910431 13910431 C A PDPN Missense_Mutation p.S44Y 0.35 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-CQ-7071-01 1 14068548 14068548 G C PRDM2 Missense_Mutation p.E94Q 0.30 benign(0.21) TCGA-CQ-7071-01 1 150432736 150432736 G A RPRD2 Missense_Mutation p.D452N 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CQ-7071-01 1 150620748 150620748 C G GOLPH3L 3'UTR 0.28 TCGA-CQ-7071-01 1 151754022 151754022 C G TDRKH Missense_Mutation p.E56Q 0.23 deleterious(0.03) probably_damaging(0.988) TCGA-CQ-7071-01 1 156706554 156706554 G C RRNAD1 3'UTR 0.34 TCGA-CQ-7071-01 1 159175410 159175410 G T DARC Missense_Mutation p.A63S 0.28 tolerated(1) benign(0.003) TCGA-CQ-7071-01 1 16258439 16258439 C T SPEN Missense_Mutation p.R1902W 0.26 probably_damaging(0.997) TCGA-CQ-7071-01 1 167757181 167757181 C T MPZL1 3'UTR 0.19 TCGA-CQ-7071-01 1 17046559 17046559 C A ESPNP RNA 0.09 TCGA-CQ-7071-01 1 170955749 170955749 G T MROH9 Missense_Mutation p.Q259H 0.26 deleterious(0) benign(0.007) TCGA-CQ-7071-01 1 173952772 173952772 G C RC3H1 Missense_Mutation p.Q126E 0.22 tolerated(0.12) possibly_damaging(0.84) TCGA-CQ-7071-01 1 179319497 179319497 G A SOAT1 Missense_Mutation p.E461K 0.29 deleterious(0) probably_damaging(0.977) TCGA-CQ-7071-01 1 186418543 186418543 C T PDC Missense_Mutation p.A17T 0.32 deleterious(0.04) benign(0.044) TCGA-CQ-7071-01 1 197071384 197071384 C T ASPM Missense_Mutation p.E2333K 0.08 tolerated(0.54) benign(0.147) TCGA-CQ-7071-01 1 20517146 20517146 C A UBXN10 Nonsense_Mutation p.S31* 0.29 TCGA-CQ-7071-01 1 205589294 205589294 C T ELK4 Missense_Mutation p.E294K 0.29 tolerated(0.53) benign(0.027) TCGA-CQ-7071-01 1 205632625 205632625 C T SLC45A3 Silent p.L98L 0.24 TCGA-CQ-7071-01 1 205689659 205689659 C G NUCKS1 Missense_Mutation p.E118Q 0.30 tolerated(0.33) benign(0.001) TCGA-CQ-7071-01 1 207793300 207793300 G C CR1 Missense_Mutation p.G2381A 0.15 deleterious(0) probably_damaging(0.994) TCGA-CQ-7071-01 1 209956970 209956970 G A C1orf74 Silent p.L4L 0.20 TCGA-CQ-7071-01 1 214557145 214557145 C T PTPN14 Missense_Mutation p.E685K 0.20 tolerated(0.39) benign(0.001) TCGA-CQ-7071-01 1 21928211 21928211 G C RAP1GAP Missense_Mutation p.Q604E 0.20 deleterious(0.03) benign(0.167) TCGA-CQ-7071-01 1 22056206 22056206 G A USP48 Nonsense_Mutation p.Q431* 0.19 TCGA-CQ-7071-01 1 240072045 240072045 G C CHRM3 Missense_Mutation p.E432Q 0.27 tolerated(0.51) benign(0.016) TCGA-CQ-7071-01 1 248570303 248570303 C T OR2T1 Silent p.N336N 0.30 TCGA-CQ-7071-01 1 27948071 27948071 C T FGR Missense_Mutation p.E143K 0.16 tolerated(0.15) benign(0.041) TCGA-CQ-7071-01 1 33237349 33237349 C G KIAA1522 Missense_Mutation p.Q857E 0.28 tolerated(0.39) benign(0.259) TCGA-CQ-7071-01 1 40226052 40226052 G C BMP8B 3'UTR 0.20 TCGA-CQ-7071-01 1 43824755 43824755 G C CDC20 5'UTR 0.25 TCGA-CQ-7071-01 1 44443590 44443590 C T ATP6V0B Intron 0.24 TCGA-CQ-7071-01 1 44474213 44474213 G C SLC6A9 Missense_Mutation p.F207L 0.25 tolerated(1) probably_damaging(0.998) TCGA-CQ-7071-01 1 45500032 45500032 C G ZSWIM5 Missense_Mutation p.E801Q 0.29 deleterious(0) unknown(0) TCGA-CQ-7071-01 1 53377416 53377416 C T ECHDC2 Silent p.L56L 0.26 TCGA-CQ-7071-01 1 57320617 57320617 C G C8A Missense_Mutation p.Q15E 0.16 tolerated(0.6) benign(0.114) TCGA-CQ-7071-01 1 62910855 62910855 C T USP1 Missense_Mutation p.S335L 0.19 tolerated(0.05) benign(0.334) TCGA-CQ-7071-01 1 75055181 75055181 G C C1orf173 Intron 0.21 TCGA-CQ-7071-01 1 9791371 9791371 G A CLSTN1 Missense_Mutation p.R881W 0.24 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 20 21227155 21227155 G C PLK1S1 RNA 0.24 TCGA-CQ-7071-01 20 23669456 23669456 C T CST4 Missense_Mutation p.A51T 0.24 tolerated(0.08) possibly_damaging(0.834) TCGA-CQ-7071-01 20 3128827 3128827 T C FASTKD5 Missense_Mutation p.D297G 0.25 deleterious(0.03) possibly_damaging(0.614) TCGA-CQ-7071-01 20 31395680 31395680 C T DNMT3B Missense_Mutation p.P845S 0.22 deleterious(0) probably_damaging(0.994) TCGA-CQ-7071-01 20 33587632 33587632 C G MYH7B Missense_Mutation p.I1610M 0.28 possibly_damaging(0.648) TCGA-CQ-7071-01 20 37154617 37154617 G C RALGAPB Missense_Mutation p.R661T 0.18 deleterious(0) probably_damaging(0.998) TCGA-CQ-7071-01 20 42169752 42169752 G T L3MBTL1 Missense_Mutation p.S836I 0.30 deleterious_low_confidence(0.02) benign(0.09) TCGA-CQ-7071-01 20 5096200 5096200 C T PCNA Missense_Mutation p.E201K 0.31 deleterious(0.02) benign(0.284) TCGA-CQ-7071-01 20 60881334 60881334 G T ADRM1 Missense_Mutation p.G138W 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-CQ-7071-01 21 10910342 10910342 G C TPTE Missense_Mutation p.L472V 0.09 tolerated(0.23) benign(0.116) TCGA-CQ-7071-01 21 34442897 34442897 G A OLIG1 Silent p.R115R 0.21 TCGA-CQ-7071-01 21 40190567 40190568 TC - ETS2 Frame_Shift_Del p.S270Wfs*10 0.26 TCGA-CQ-7071-01 21 45736388 45736388 C T PFKL Missense_Mutation p.S306F 0.19 deleterious(0) probably_damaging(0.929) TCGA-CQ-7071-01 21 45949754 45949754 C A TSPEAR Silent p.V239V 0.20 TCGA-CQ-7071-01 21 47532724 47532724 G C COL6A2 Missense_Mutation p.E241Q 0.24 tolerated(0.47) benign(0.324) TCGA-CQ-7071-01 22 18364025 18364025 G A MICAL3 Intron 0.21 TCGA-CQ-7071-01 22 25599781 25599781 G A CRYBB3 Silent p.E82E 0.24 TCGA-CQ-7071-01 22 27024347 27024347 G C CRYBA4 Missense_Mutation p.M132I 0.28 deleterious(0.04) benign(0.116) TCGA-CQ-7071-01 22 30415704 30415704 G A MTMR3 Missense_Mutation p.E686K 0.31 deleterious(0.04) probably_damaging(0.968) TCGA-CQ-7071-01 22 39176933 39176933 C A DNAL4 Nonsense_Mutation p.E51* 0.23 TCGA-CQ-7071-01 22 41077127 41077127 C T MCHR1 Missense_Mutation p.S155L 0.33 deleterious(0) probably_damaging(0.998) TCGA-CQ-7071-01 22 43089285 43089285 G A A4GALT Missense_Mutation p.R225C 0.28 deleterious(0.03) possibly_damaging(0.863) TCGA-CQ-7071-01 2 101893723 101893723 G A RNF149 Missense_Mutation p.R394W 0.28 deleterious_low_confidence(0) benign(0.431) TCGA-CQ-7071-01 2 102805746 102805746 C T IL1RL2 Missense_Mutation p.S90L 0.31 deleterious(0) probably_damaging(0.94) TCGA-CQ-7071-01 2 102955360 102955360 C T IL1RL1 Missense_Mutation p.P42L 0.24 tolerated(0.14) benign(0.099) TCGA-CQ-7071-01 2 10583894 10583894 G A ODC1 Missense_Mutation p.T173M 0.27 deleterious(0.01) probably_damaging(0.944) TCGA-CQ-7071-01 2 152394687 152394687 G C NEB Silent p.V6988V 0.24 TCGA-CQ-7071-01 2 160709782 160709782 A G LY75-CD302 Splice_Site p.X915_splice 0.23 TCGA-CQ-7071-01 2 166231294 166231294 C T SCN2A Missense_Mutation p.L1358F 0.32 tolerated(0.05) possibly_damaging(0.899) TCGA-CQ-7071-01 2 167760287 167760287 G C XIRP2 Missense_Mutation p.D99H 0.20 probably_damaging(0.957) TCGA-CQ-7071-01 2 169707858 169707858 G A NOSTRIN Missense_Mutation p.E324K 0.26 tolerated(0.05) possibly_damaging(0.468) TCGA-CQ-7071-01 2 179470076 179470076 C T TTN Intron 0.22 TCGA-CQ-7071-01 2 179485937 179485937 C T TTN Missense_Mutation p.D15170N 0.33 TCGA-CQ-7071-01 2 185803847 185803847 G A ZNF804A 3'UTR 0.33 TCGA-CQ-7071-01 2 202131281 202131281 C G CASP8 Missense_Mutation p.F83L 0.26 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 2 202149735 202149735 C G CASP8 Missense_Mutation p.I392M 0.29 deleterious(0) probably_damaging(0.998) TCGA-CQ-7071-01 2 202899764 202899764 G C FZD7 Missense_Mutation p.E132Q 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-CQ-7071-01 2 204571443 204571443 C T CD28 Silent p.L8L 0.23 TCGA-CQ-7071-01 2 208633089 208633089 G A FZD5 Silent p.F125F 0.17 TCGA-CQ-7071-01 2 215013969 215013969 G A SPAG16 Missense_Mutation p.E567K 0.18 tolerated(0.81) benign(0.039) TCGA-CQ-7071-01 2 219221871 219221871 G A C2orf62 Missense_Mutation p.E27K 0.27 tolerated(0.89) benign(0.013) TCGA-CQ-7071-01 2 225666675 225666675 A - DOCK10 Frame_Shift_Del p.S1451Lfs*9 0.24 TCGA-CQ-7071-01 2 225751178 225751178 C A DOCK10 Nonsense_Mutation p.E163* 0.14 TCGA-CQ-7071-01 2 226516426 226516426 G A NYAP2 3'UTR 0.24 TCGA-CQ-7071-01 2 231193506 231193506 G C SP140L Missense_Mutation p.E23Q 0.26 tolerated_low_confidence(0.05) possibly_damaging(0.607) TCGA-CQ-7071-01 2 238672057 238672057 G C LRRFIP1 Missense_Mutation p.K567N 0.34 deleterious(0.02) possibly_damaging(0.883) TCGA-CQ-7071-01 2 27121556 27121556 C T DPYSL5 Silent p.I63I 0.39 TCGA-CQ-7071-01 2 32463255 32463255 C T NLRC4 Missense_Mutation p.E823K 0.33 tolerated(0.27) benign(0.004) TCGA-CQ-7071-01 2 32728184 32728184 C T BIRC6 Missense_Mutation p.S3127L 0.36 probably_damaging(0.935) TCGA-CQ-7071-01 2 39564678 39564678 C G MAP4K3 Missense_Mutation p.E119Q 0.16 deleterious(0.01) probably_damaging(1) TCGA-CQ-7071-01 2 46587818 46587818 C A EPAS1 Silent p.R166R 0.33 TCGA-CQ-7071-01 2 50318532 50318532 C T NRXN1 Missense_Mutation p.R1256H 0.22 deleterious(0) probably_damaging(0.967) TCGA-CQ-7071-01 2 54856156 54856156 G T SPTBN1 Nonsense_Mutation p.E629* 0.27 TCGA-CQ-7071-01 2 61149497 61149497 G C REL Missense_Mutation p.E563Q 0.32 deleterious_low_confidence(0.05) benign(0.051) TCGA-CQ-7071-01 2 61441396 61441396 C G USP34 Missense_Mutation p.K2827N 0.28 deleterious(0.02) possibly_damaging(0.656) TCGA-CQ-7071-01 2 61492647 61492647 C T USP34 Missense_Mutation p.R1888H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 2 68385190 68385190 G A PNO1 Missense_Mutation p.G42R 0.22 tolerated(0.13) benign(0) TCGA-CQ-7071-01 2 74043451 74043451 G C C2orf78 Missense_Mutation p.E701Q 0.20 tolerated(0.19) benign(0.056) TCGA-CQ-7071-01 2 79384211 79384211 A T REG3A 3'UTR 0.45 TCGA-CQ-7071-01 2 80529877 80529877 G A LRRTM1 Silent p.A356A 0.17 TCGA-CQ-7071-01 2 86705816 86705816 C G KDM3A Missense_Mutation p.F758L 0.17 tolerated(0.66) benign(0.003) TCGA-CQ-7071-01 2 98275339 98275339 C G ACTR1B Intron 0.20 TCGA-CQ-7071-01 2 99763938 99763938 C G C2ORF15 Nonsense_Mutation p.S3* 0.22 TCGA-CQ-7071-01 3 10443927 10443927 G A ATP2B2 Missense_Mutation p.T168M 0.22 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 3 11871286 11871286 C G TAMM41 Missense_Mutation p.R155T 0.34 tolerated(0.55) benign(0.004) TCGA-CQ-7071-01 3 121383839 121383839 G A GOLGB1 Silent p.I3203I 0.23 TCGA-CQ-7071-01 3 122172742 122172742 G C KPNA1 Nonsense_Mutation p.S180* 0.27 TCGA-CQ-7071-01 3 122288293 122288293 C G DTX3L Missense_Mutation p.L453V 0.26 tolerated(0.26) benign(0.05) TCGA-CQ-7071-01 3 128755945 128755945 G A EFCC1 Silent p.Q525Q 0.22 TCGA-CQ-7071-01 3 130159322 130159322 C - COL6A5 Frame_Shift_Del p.T2047Ifs*6 0.22 TCGA-CQ-7071-01 3 140785393 140785393 C T SPSB4 Silent p.L149L 0.33 TCGA-CQ-7071-01 3 149042734 149042734 G C TM4SF18 Missense_Mutation p.L115V 0.26 deleterious(0.01) possibly_damaging(0.872) TCGA-CQ-7071-01 3 149678610 149678610 C G RNF13 Missense_Mutation p.Q289E 0.23 tolerated(0.81) benign(0.004) TCGA-CQ-7071-01 3 15686777 15686777 G T BTD Nonsense_Mutation p.G472* 0.27 TCGA-CQ-7071-01 3 171320848 171320848 G C PLD1 3'UTR 0.20 TCGA-CQ-7071-01 3 175189432 175189432 C G NAALADL2 Missense_Mutation p.F513L 0.37 tolerated(1) benign(0.015) TCGA-CQ-7071-01 3 185363203 185363203 C G IGF2BP2 3'UTR 0.30 TCGA-CQ-7071-01 3 194081391 194081391 C G LRRC15 Missense_Mutation p.E134Q 0.29 tolerated(0.13) possibly_damaging(0.673) TCGA-CQ-7071-01 3 19554753 19554753 G C KCNH8 Missense_Mutation p.E791Q 0.09 tolerated(0.42) benign(0.282) TCGA-CQ-7071-01 3 196529932 196529932 C G PAK2 Missense_Mutation p.I111M 0.16 deleterious(0.01) possibly_damaging(0.839) TCGA-CQ-7071-01 3 28365426 28365426 C G CMC1 3'UTR 0.33 TCGA-CQ-7071-01 3 30715709 30715709 A G TGFBR2 Missense_Mutation p.E481G 0.30 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 3 30732942 30732942 G A TGFBR2 Missense_Mutation p.E544K 0.23 deleterious(0) probably_damaging(0.992) TCGA-CQ-7071-01 3 37368485 37368485 C T GOLGA4 Missense_Mutation p.S1725L 0.26 benign(0.381) TCGA-CQ-7071-01 3 383734 383734 G C CHL1 Missense_Mutation p.Q216H 0.25 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 3 38401877 38401877 C G XYLB Missense_Mutation p.S63C 0.19 deleterious(0.01) possibly_damaging(0.762) TCGA-CQ-7071-01 3 38755520 38755520 G A SCN10A Missense_Mutation p.P1245S 0.25 tolerated(0.41) benign(0.006) TCGA-CQ-7071-01 3 4715998 4715998 G A ITPR1 Missense_Mutation p.D842N 0.14 tolerated(0.42) benign(0.02) TCGA-CQ-7071-01 3 48465367 48465367 G A PLXNB1 Silent p.F218F 0.31 TCGA-CQ-7071-01 3 49050727 49050727 G A WDR6 Missense_Mutation p.R617H 0.29 deleterious(0) probably_damaging(0.998) TCGA-CQ-7071-01 3 50154870 50154870 G T RBM5 Intron 0.30 TCGA-CQ-7071-01 3 50220147 50220147 C A SEMA3F Missense_Mutation p.F278L 0.22 deleterious(0.04) benign(0.044) TCGA-CQ-7071-01 3 52256285 52256285 C G TLR9 Missense_Mutation p.D837H 0.27 deleterious(0) probably_damaging(0.989) TCGA-CQ-7071-01 3 60522666 60522666 G C FHIT Missense_Mutation p.I10M 0.28 deleterious(0) probably_damaging(0.98) TCGA-CQ-7071-01 3 66457861 66457861 C G LRIG1 Silent p.L330L 0.28 TCGA-CQ-7071-01 3 73112163 73112163 G C EBLN2 3'UTR 0.31 TCGA-CQ-7071-01 3 74350882 74350882 C A CNTN3 Missense_Mutation p.G621C 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 3 77526649 77526649 G T ROBO2 Missense_Mutation p.R174L 0.17 deleterious(0) benign(0.409) TCGA-CQ-7071-01 3 85961650 85961650 C T CADM2 Silent p.L212L 0.24 TCGA-CQ-7071-01 3 88188595 88188595 G C ZNF654 Missense_Mutation p.K45N 0.31 deleterious(0) probably_damaging(0.925) TCGA-CQ-7071-01 3 9879810 9879810 G A RPUSD3 Missense_Mutation p.R316W 0.33 tolerated(0.06) benign(0.009) TCGA-CQ-7071-01 3 99568511 99568511 G A FILIP1L Missense_Mutation p.A670V 0.24 deleterious(0) possibly_damaging(0.901) TCGA-CQ-7071-01 4 100205590 100205590 G C ADH1A Nonsense_Mutation p.S178* 0.29 TCGA-CQ-7071-01 4 114823652 114823652 G A ARSJ Silent p.F526F 0.25 TCGA-CQ-7071-01 4 115891626 115891626 G C NDST4 Missense_Mutation p.S394C 0.36 tolerated(0.08) possibly_damaging(0.557) TCGA-CQ-7071-01 4 119252894 119252894 C G PRSS12 Silent p.V316V 0.15 TCGA-CQ-7071-01 4 143033698 143033698 T G INPP4B Missense_Mutation p.E758A 0.28 deleterious(0) possibly_damaging(0.875) TCGA-CQ-7071-01 4 144135764 144135764 G C USP38 Missense_Mutation p.E879Q 0.42 tolerated(0.38) benign(0.016) TCGA-CQ-7071-01 4 146033476 146033476 G C ABCE1 Missense_Mutation p.D266H 0.42 deleterious(0.02) benign(0.005) TCGA-CQ-7071-01 4 155457852 155457852 C G PLRG1 Missense_Mutation p.K510N 0.40 deleterious(0.01) possibly_damaging(0.46) TCGA-CQ-7071-01 4 155510018 155510018 C T FGA Silent p.K97K 0.31 TCGA-CQ-7071-01 4 16024960 16024960 G C PROM1 Missense_Mutation p.S258C 0.39 tolerated(0.11) benign(0.082) TCGA-CQ-7071-01 4 183672970 183672970 G A TENM3 Missense_Mutation p.R1216K 0.24 tolerated(1) benign(0.003) TCGA-CQ-7071-01 4 20599966 20599966 C T SLIT2 Missense_Mutation p.R1214C 0.26 deleterious(0) possibly_damaging(0.851) TCGA-CQ-7071-01 4 20619061 20619061 G C SLIT2 Splice_Site p.X1379_splice 0.12 TCGA-CQ-7071-01 4 367418 367418 G A ZNF141 Missense_Mutation p.E398K 0.28 tolerated(0.09) probably_damaging(0.973) TCGA-CQ-7071-01 4 39230269 39230269 C T WDR19 Silent p.D647D 0.18 TCGA-CQ-7071-01 4 55953828 55953828 T C KDR Missense_Mutation p.E1203G 0.20 deleterious(0.02) benign(0.284) TCGA-CQ-7071-01 4 6642574 6642574 G C MRFAP1 5'UTR 0.08 TCGA-CQ-7071-01 4 68504713 68504713 C G UBA6 Missense_Mutation p.D562H 0.27 tolerated(0.07) possibly_damaging(0.566) TCGA-CQ-7071-01 4 68506923 68506923 C G UBA6 Missense_Mutation p.L500F 0.28 deleterious(0) probably_damaging(0.926) TCGA-CQ-7071-01 4 68619908 68619908 G C GNRHR Missense_Mutation p.S49C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 4 6863601 6863601 C G KIAA0232 Missense_Mutation p.L498V 0.16 deleterious(0.01) possibly_damaging(0.631) TCGA-CQ-7071-01 4 71347025 71347025 C A MUC7 Silent p.T188T 0.26 TCGA-CQ-7071-01 4 99064195 99064195 G A STPG2 Missense_Mutation p.T36I 0.32 deleterious(0.04) possibly_damaging(0.795) TCGA-CQ-7071-01 5 10263367 10263367 G A CCT5 Missense_Mutation p.R480K 0.30 tolerated(0.46) benign(0.003) TCGA-CQ-7071-01 5 113699651 113699653 ATC - KCNN2 In_Frame_Del p.I180del 0.37 TCGA-CQ-7071-01 5 128862009 128862009 G C ADAMTS19 Missense_Mutation p.E310Q 0.27 tolerated(0.17) benign(0.018) TCGA-CQ-7071-01 5 131007718 131007718 C T FNIP1 Missense_Mutation p.E807K 0.21 tolerated(0.84) benign(0.087) TCGA-CQ-7071-01 5 133900186 133900186 C T JADE2 Silent p.V285V 0.42 TCGA-CQ-7071-01 5 134364847 134364848 - A PITX1 Frame_Shift_Ins p.A190Gfs*382 0.18 TCGA-CQ-7071-01 5 136834061 136834061 C T SPOCK1 Splice_Site p.X62_splice 0.24 TCGA-CQ-7071-01 5 13721250 13721250 G C DNAH5 Missense_Mutation p.I4046M 0.25 possibly_damaging(0.639) TCGA-CQ-7071-01 5 139781638 139781638 C T ANKHD1 Missense_Mutation p.S29L 0.21 unknown(0) TCGA-CQ-7071-01 5 140021368 140021368 C T TMCO6 Intron 0.27 TCGA-CQ-7071-01 5 140175878 140175878 C T PCDHA2 Silent p.I443I 0.26 TCGA-CQ-7071-01 5 140874379 140874379 C A PCDHGB6 Silent p.A808A 0.30 TCGA-CQ-7071-01 5 141385883 141385883 G A GNPDA1 Nonsense_Mutation p.R79* 0.24 TCGA-CQ-7071-01 5 142513625 142513625 G A ARHGAP26 Missense_Mutation p.E598K 0.32 tolerated(1) benign(0.016) TCGA-CQ-7071-01 5 14713736 14713736 C A ANKH Silent p.L394L 0.15 TCGA-CQ-7071-01 5 149771523 149771523 G A TCOF1 Missense_Mutation p.D1101N 0.27 tolerated(0.06) possibly_damaging(0.715) TCGA-CQ-7071-01 5 150322223 150322223 C G ZNF300P1 RNA 0.15 TCGA-CQ-7071-01 5 176301330 176301330 C T UNC5A Missense_Mutation p.L381F 0.24 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 5 177546744 177546744 G C N4BP3 Missense_Mutation p.E54Q 0.27 deleterious(0) probably_damaging(0.993) TCGA-CQ-7071-01 5 179225171 179225171 C G MGAT4B Silent p.L554L 0.21 TCGA-CQ-7071-01 5 180432442 180432442 G C BTNL3 Missense_Mutation p.R324T 0.26 deleterious(0.02) probably_damaging(0.993) TCGA-CQ-7071-01 5 19483580 19483580 G C CDH18 Missense_Mutation p.S571C 0.29 tolerated(0.1) possibly_damaging(0.552) TCGA-CQ-7071-01 5 31538724 31538724 G C C5orf22 Silent p.G245G 0.34 TCGA-CQ-7071-01 5 32087656 32087656 C T PDZD2 Missense_Mutation p.H1368Y 0.18 tolerated(1) benign(0.034) TCGA-CQ-7071-01 5 35066071 35066071 G C PRLR Nonsense_Mutation p.S330* 0.17 TCGA-CQ-7071-01 5 40853799 40853799 C T CARD6 Missense_Mutation p.H789Y 0.27 deleterious(0) benign(0.173) TCGA-CQ-7071-01 5 5460625 5460625 C G KIAA0947 Nonsense_Mutation p.S393* 0.33 TCGA-CQ-7071-01 5 5461756 5461756 C G KIAA0947 Nonsense_Mutation p.S770* 0.33 TCGA-CQ-7071-01 5 7866918 7866918 C A FASTKD3 Missense_Mutation p.A427S 0.31 tolerated(0.61) benign(0.088) TCGA-CQ-7071-01 5 7866996 7866996 C G FASTKD3 Missense_Mutation p.E401Q 0.25 deleterious(0.01) probably_damaging(0.964) TCGA-CQ-7071-01 5 79032926 79032926 G T CMYA5 Nonsense_Mutation p.E2780* 0.39 TCGA-CQ-7071-01 6 105239524 105239524 G A HACE1 Missense_Mutation p.S310F 0.21 deleterious(0) probably_damaging(0.997) TCGA-CQ-7071-01 6 107390474 107390474 C T BEND3 Missense_Mutation p.E641K 0.25 deleterious(0) probably_damaging(0.928) TCGA-CQ-7071-01 6 111621277 111621277 C T REV3L Missense_Mutation p.R3112Q 0.27 tolerated(0.17) probably_damaging(0.998) TCGA-CQ-7071-01 6 111696154 111696154 C G REV3L Missense_Mutation p.R1135T 0.24 deleterious_low_confidence(0.02) benign(0.253) TCGA-CQ-7071-01 6 116910017 116910017 C G RWDD1 Missense_Mutation p.L95V 0.34 deleterious(0.03) benign(0.376) TCGA-CQ-7071-01 6 123319300 123319300 G T CLVS2 Missense_Mutation p.W126C 0.32 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 6 129785590 129785590 G C LAMA2 Missense_Mutation p.R2383P 0.26 deleterious(0.05) benign(0.384) TCGA-CQ-7071-01 6 138201248 138201248 C T TNFAIP3 Silent p.S649S 0.28 TCGA-CQ-7071-01 6 144875972 144875972 C G UTRN Silent p.L2359L 0.18 TCGA-CQ-7071-01 6 152679603 152679603 C T SYNE1 Missense_Mutation p.E3505K 0.33 probably_damaging(0.997) TCGA-CQ-7071-01 6 158923702 158923702 G A TULP4 Missense_Mutation p.D1003N 0.25 deleterious_low_confidence(0) benign(0.393) TCGA-CQ-7071-01 6 167753592 167753592 G C TTLL2 Splice_Site p.X69_splice 0.26 TCGA-CQ-7071-01 6 167753614 167753614 G A TTLL2 Missense_Mutation p.E76K 0.22 tolerated(0.08) possibly_damaging(0.761) TCGA-CQ-7071-01 6 170891962 170891962 C G PDCD2 Intron 0.44 TCGA-CQ-7071-01 6 17772181 17772181 C T KIF13A Silent p.K1478K 0.33 TCGA-CQ-7071-01 6 27806507 27806509 AGA - HIST1H2BN In_Frame_Del p.K25del 0.29 TCGA-CQ-7071-01 6 28268867 28268867 C G PGBD1 Silent p.L412L 0.35 TCGA-CQ-7071-01 6 29912176 29912176 T C HLA-A Splice_Site p.X299_splice 0.54 TCGA-CQ-7071-01 6 30572460 30572460 G C PPP1R10 Missense_Mutation p.S336C 0.27 deleterious(0) possibly_damaging(0.841) TCGA-CQ-7071-01 6 31170541 31170541 C T HCG27 Missense_Mutation p.H173Y 0.26 deleterious_low_confidence(0) unknown(0) TCGA-CQ-7071-01 6 31324681 31324681 C T HLA-B Missense_Mutation p.E43K 0.69 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-CQ-7071-01 6 31324862 31324862 C G HLA-B Splice_Site p.X25_splice 0.64 TCGA-CQ-7071-01 6 31508147 31508147 C G DDX39B Missense_Mutation p.E55Q 0.27 deleterious(0.02) possibly_damaging(0.728) TCGA-CQ-7071-01 6 31508228 31508228 C A DDX39B Nonsense_Mutation p.E28* 0.26 TCGA-CQ-7071-01 6 31600501 31600501 G A PRRC2A Missense_Mutation p.V1351M 0.26 unknown(0) TCGA-CQ-7071-01 6 32029484 32029484 C G TNXB Missense_Mutation p.E2394D 0.27 benign(0.16) TCGA-CQ-7071-01 6 32046848 32046848 C T RNA5SP206 5'Flank 0.69 TCGA-CQ-7071-01 6 32133980 32133980 G A EGFL8 Missense_Mutation p.G13E 0.33 deleterious(0.01) benign(0.255) TCGA-CQ-7071-01 6 3273189 3273189 G C SLC22A23 3'UTR 0.26 TCGA-CQ-7071-01 6 33170440 33170440 G C SLC39A7 Silent p.V301V 0.29 TCGA-CQ-7071-01 6 33422991 33422991 G A ZBTB9 Silent p.L38L 0.25 TCGA-CQ-7071-01 6 34574664 34574664 G A C6orf106 Missense_Mutation p.L177F 0.49 deleterious(0.01) probably_damaging(0.92) TCGA-CQ-7071-01 6 36291094 36291094 G A C6orf222 Missense_Mutation p.R483W 0.28 tolerated(0.07) probably_damaging(0.942) TCGA-CQ-7071-01 6 36355334 36355334 G A ETV7 5'UTR 0.17 TCGA-CQ-7071-01 6 37606334 37606334 G A MDGA1 Silent p.I882I 0.25 TCGA-CQ-7071-01 6 4135747 4135747 C G ECI2 Silent p.P16P 0.20 TCGA-CQ-7071-01 6 46660792 46660792 G C TDRD6 Missense_Mutation p.E1643Q 0.21 deleterious(0.04) benign(0.045) TCGA-CQ-7071-01 6 51890958 51890958 G C PKHD1 Nonsense_Mutation p.S1217* 0.30 TCGA-CQ-7071-01 6 53519582 53519582 C T KLHL31 Silent p.L163L 0.17 TCGA-CQ-7071-01 6 73787168 73787168 G A KCNQ5 Missense_Mutation p.R247Q 0.20 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 6 83850048 83850048 C T DOPEY1 Nonsense_Mutation p.Q1781* 0.36 TCGA-CQ-7071-01 6 88315655 88315655 G C ORC3 Missense_Mutation p.D115H 0.23 tolerated(0.06) benign(0.098) TCGA-CQ-7071-01 6 90403841 90403841 C T MDN1 Missense_Mutation p.R3278K 0.18 benign(0.002) TCGA-CQ-7071-01 6 90604393 90604393 C A GJA10 Missense_Mutation p.A69E 0.20 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 6 99894132 99894132 C T USP45 Missense_Mutation p.E506K 0.25 tolerated(0.08) probably_damaging(0.986) TCGA-CQ-7071-01 7 121766480 121766480 C G AASS Missense_Mutation p.D141H 0.23 deleterious(0) probably_damaging(0.983) TCGA-CQ-7071-01 7 122634944 122634944 C G TAS2R16 Missense_Mutation p.G249R 0.24 tolerated(0.42) possibly_damaging(0.713) TCGA-CQ-7071-01 7 128119444 128119444 G A METTL2B Silent p.S145S 0.11 TCGA-CQ-7071-01 7 131012732 131012732 C G MKLN1 Missense_Mutation p.S25C 0.11 deleterious(0) probably_damaging(0.98) TCGA-CQ-7071-01 7 131012745 131012745 C T MKLN1 Silent p.T29T 0.10 TCGA-CQ-7071-01 7 136587929 136587929 T C CHRM2 Intron 0.20 TCGA-CQ-7071-01 7 148456685 148456685 G A CUL1 Missense_Mutation p.E194K 0.31 deleterious(0.02) possibly_damaging(0.6) TCGA-CQ-7071-01 7 150217650 150217650 C T GIMAP7 Silent p.N196N 0.25 TCGA-CQ-7071-01 7 2472855 2472855 C T CHST12 Missense_Mutation p.A194V 0.30 tolerated(0.41) benign(0.021) TCGA-CQ-7071-01 7 36462396 36462396 C G ANLN Silent p.V818V 0.25 TCGA-CQ-7071-01 7 47869116 47869116 C A PKD1L1 Missense_Mutation p.R2214S 0.31 deleterious(0.01) benign(0.021) TCGA-CQ-7071-01 7 5104433 5104433 G C RBAK Missense_Mutation p.R449T 0.27 deleterious(0) probably_damaging(0.998) TCGA-CQ-7071-01 7 6045564 6045564 T A PMS2 Missense_Mutation p.E41V 0.27 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 7 7412996 7412996 C T COL28A1 Silent p.E847E 0.29 TCGA-CQ-7071-01 7 81591337 81591337 C T CACNA2D1 Missense_Mutation p.E947K 0.33 tolerated(0.14) benign(0.009) TCGA-CQ-7071-01 7 81624189 81624189 C T CACNA2D1 Missense_Mutation p.D577N 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-CQ-7071-01 7 87178750 87178750 G A ABCB1 Missense_Mutation p.R547C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 7 99516950 99516950 G C TRIM4 Missense_Mutation p.I25M 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-CQ-7071-01 8 118175734 118175734 C G SLC30A8 Missense_Mutation p.T265S 0.35 tolerated(0.07) possibly_damaging(0.794) TCGA-CQ-7071-01 8 118175750 118175750 C G SLC30A8 Missense_Mutation p.F270L 0.35 tolerated(0.18) benign(0.009) TCGA-CQ-7071-01 8 120862657 120862657 C G DSCC1 Missense_Mutation p.D151H 0.25 deleterious(0.01) possibly_damaging(0.717) TCGA-CQ-7071-01 8 121500541 121500541 G A MTBP Silent p.K436K 0.19 TCGA-CQ-7071-01 8 125555355 125555355 G C NDUFB9 Missense_Mutation p.L43F 0.28 tolerated(0.05) benign(0.16) TCGA-CQ-7071-01 8 126071480 126071480 C G KIAA0196 Missense_Mutation p.R583T 0.24 deleterious(0) possibly_damaging(0.901) TCGA-CQ-7071-01 8 143927842 143927842 G C GML Missense_Mutation p.K71N 0.32 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 8 145152146 145152146 G A CYC1 Missense_Mutation p.M295I 0.37 tolerated(1) benign(0.008) TCGA-CQ-7071-01 8 145617171 145617171 G A ADCK5 Missense_Mutation p.E349K 0.34 deleterious(0) possibly_damaging(0.885) TCGA-CQ-7071-01 8 146156489 146156489 G C ZNF16 Missense_Mutation p.Q562E 0.22 tolerated(0.26) benign(0.016) TCGA-CQ-7071-01 8 25290879 25290879 C G KCTD9 Missense_Mutation p.E296Q 0.20 tolerated(0.13) probably_damaging(0.999) TCGA-CQ-7071-01 8 38315005 38315005 C G FGFR1 Missense_Mutation p.R20T 0.26 deleterious_low_confidence(0.04) unknown(0) TCGA-CQ-7071-01 8 38693803 38693803 G C TACC1 Missense_Mutation p.E613Q 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-CQ-7071-01 8 55372372 55372372 C A SOX17 Silent p.L354L 0.26 TCGA-CQ-7071-01 8 63948295 63948295 C G GGH Missense_Mutation p.M48I 0.13 tolerated(0.3) benign(0.014) TCGA-CQ-7071-01 8 70533395 70533395 C A SULF1 Missense_Mutation p.D501E 0.20 tolerated(1) benign(0.005) TCGA-CQ-7071-01 8 74231427 74231427 G A RDH10 Missense_Mutation p.E208K 0.34 tolerated(0.11) probably_damaging(0.936) TCGA-CQ-7071-01 8 86057663 86057663 G C LRRCC1 Missense_Mutation p.E1006Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-CQ-7071-01 8 89053599 89053599 C T MMP16 3'UTR 0.23 TCGA-CQ-7071-01 8 95392501 95392501 T C RAD54B Missense_Mutation p.N707D 0.22 deleterious(0) probably_damaging(0.998) TCGA-CQ-7071-01 8 97263142 97263142 C T MTERFD1 Silent p.L223L 0.27 TCGA-CQ-7071-01 9 100079383 100079383 C G CCDC180 Missense_Mutation p.L322V 0.29 tolerated(0.1) benign(0.171) TCGA-CQ-7071-01 9 101068556 101068556 G A GABBR2 Silent p.I692I 0.27 TCGA-CQ-7071-01 9 107568576 107568576 G A ABCA1 Silent p.I1470I 0.24 TCGA-CQ-7071-01 9 116079022 116079022 C G WDR31 3'UTR 0.19 TCGA-CQ-7071-01 9 117138967 117138967 C T AKNA Missense_Mutation p.E374K 0.23 deleterious(0) possibly_damaging(0.906) TCGA-CQ-7071-01 9 117139390 117139390 C G AKNA Missense_Mutation p.E233Q 0.35 deleterious(0.02) possibly_damaging(0.886) TCGA-CQ-7071-01 9 135267530 135267530 C T TTF1 Silent p.K640K 0.21 TCGA-CQ-7071-01 9 135926201 135926201 G A GTF3C5 Missense_Mutation p.E202K 0.26 tolerated(0.23) benign(0.036) TCGA-CQ-7071-01 9 139317659 139317659 G C PMPCA Missense_Mutation p.Q507H 0.19 deleterious(0.03) benign(0.127) TCGA-CQ-7071-01 9 139412344 139412344 C A NOTCH1 Missense_Mutation p.G434V 0.32 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 9 139413130 139413130 C T NOTCH1 Missense_Mutation p.D338N 0.29 deleterious(0) possibly_damaging(0.873) TCGA-CQ-7071-01 9 139699958 139699958 C G CCDC183 Intron 0.23 TCGA-CQ-7071-01 9 139837266 139837266 C T FBXW5 Missense_Mutation p.G161R 0.30 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 9 140001200 140001200 C G MAN1B1 Missense_Mutation p.S502C 0.21 deleterious(0) probably_damaging(0.993) TCGA-CQ-7071-01 9 27949403 27949403 C T LINGO2 Missense_Mutation p.D423N 0.28 tolerated(0.17) benign(0.077) TCGA-CQ-7071-01 9 32987599 32987599 G C APTX Missense_Mutation p.S142R 0.23 tolerated(0.26) benign(0.005) TCGA-CQ-7071-01 9 5457237 5457237 G A CD274 Missense_Mutation p.E71K 0.32 tolerated(0.9) benign(0.002) TCGA-CQ-7071-01 9 5797843 5797843 G T ERMP1 Missense_Mutation p.S787Y 0.22 deleterious(0.01) benign(0.187) TCGA-CQ-7071-01 9 71002428 71002428 C G PGM5 Missense_Mutation p.I207M 0.22 deleterious(0.01) probably_damaging(0.963) TCGA-CQ-7071-01 9 79910685 79910685 G A VPS13A Missense_Mutation p.M1245I 0.25 tolerated(0.43) benign(0.001) TCGA-CQ-7071-01 9 84608465 84608465 G T SPATA31D1 Missense_Mutation p.R1027I 0.09 tolerated(0.19) possibly_damaging(0.782) TCGA-CQ-7071-01 9 85987841 85987841 G A FRMD3 Silent p.F94F 0.19 TCGA-CQ-7071-01 9 91617305 91617305 G A S1PR3 3'UTR 0.31 TCGA-CQ-7071-01 X 100240808 100240808 G A ARL13A Missense_Mutation p.V95I 0.24 deleterious(0.01) probably_damaging(1) TCGA-CQ-7071-01 X 100668287 100668287 G T HNRNPH2 Silent p.L437L 0.24 TCGA-CQ-7071-01 X 105075066 105075066 C G NRK Nonsense_Mutation p.S26* 0.17 TCGA-CQ-7071-01 X 105153231 105153231 G A NRK Missense_Mutation p.G534D 0.31 tolerated_low_confidence(0.08) benign(0.025) TCGA-CQ-7071-01 X 107433638 107433638 G A COL4A6 Silent p.G471G 0.25 TCGA-CQ-7071-01 X 107834330 107834330 G A COL4A5 Missense_Mutation p.G403E 0.24 unknown(0) TCGA-CQ-7071-01 X 118675309 118675309 C G CXorf56 Missense_Mutation p.K196N 0.22 deleterious(0.01) probably_damaging(0.933) TCGA-CQ-7071-01 X 123657442 123657442 G C TENM1 Silent p.V935V 0.22 TCGA-CQ-7071-01 X 129059037 129059037 G A UTP14A Missense_Mutation p.E539K 0.23 tolerated(0.21) benign(0.05) TCGA-CQ-7071-01 X 12938837 12938837 G A TLR8 Missense_Mutation p.D560N 0.31 deleterious(0) probably_damaging(1) TCGA-CQ-7071-01 X 129822945 129822945 G A ENOX2 Missense_Mutation p.P78S 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-7071-01 X 13061274 13061274 G C FAM9C Missense_Mutation p.S52C 0.20 deleterious(0.03) benign(0.058) TCGA-CQ-7071-01 X 132887678 132887678 C A GPC3 Missense_Mutation p.G288V 0.05 deleterious(0.02) possibly_damaging(0.812) TCGA-CQ-7071-01 X 134494649 134494649 C G ZNF449 Missense_Mutation p.S402C 0.22 tolerated(0.19) benign(0.02) TCGA-CQ-7071-01 X 140335792 140335792 A T SPANXC Missense_Mutation p.L51Q 0.12 deleterious(0) probably_damaging(0.924) TCGA-CQ-7071-01 X 148627327 148627327 G A CXorf40A Missense_Mutation p.D51N 0.28 tolerated(0.44) benign(0.002) TCGA-CQ-7071-01 X 151091965 151091965 G C MAGEA4 5'UTR 0.18 TCGA-CQ-7071-01 X 153032532 153032532 G C PLXNB3 Missense_Mutation p.E107Q 0.35 tolerated(0.25) benign(0.028) TCGA-CQ-7071-01 X 153135906 153135906 G C L1CAM Missense_Mutation p.S248C 0.25 deleterious(0.02) possibly_damaging(0.759) TCGA-CQ-7071-01 X 153587740 153587740 C G FLNA Missense_Mutation p.E1393Q 0.31 deleterious(0) probably_damaging(0.993) TCGA-CQ-7071-01 X 29301228 29301228 G C IL1RAPL1 Missense_Mutation p.E86Q 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-CQ-7071-01 X 34149229 34149229 C T FAM47A Silent p.P389P 0.20 TCGA-CQ-7071-01 X 34149282 34149282 C A FAM47A Missense_Mutation p.G372W 0.25 deleterious(0.04) possibly_damaging(0.82) TCGA-CQ-7071-01 X 34657458 34657458 G C TMEM47 Missense_Mutation p.I91M 0.25 deleterious(0.01) benign(0.446) TCGA-CQ-7071-01 X 35974238 35974238 G C CXorf22 Silent p.V445V 0.28 TCGA-CQ-7071-01 X 46915517 46915517 G C JADE3 Missense_Mutation p.E493Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-CQ-7071-01 X 47917923 47917923 G A ZNF630 Silent p.F636F 0.25 TCGA-CQ-7071-01 X 48320414 48320414 C G SLC38A5 Missense_Mutation p.Q250H 0.15 tolerated(0.08) benign(0.013) TCGA-CQ-7071-01 X 48382451 48382451 T A EBP Missense_Mutation p.S98T 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-CQ-7071-01 X 48661586 48661586 G A HDAC6 Missense_Mutation p.E92K 0.32 deleterious(0.02) possibly_damaging(0.889) TCGA-CQ-7071-01 X 50052615 50052616 - C CCNB3 Frame_Shift_Ins p.T485Hfs*37 0.25 TCGA-CQ-7071-01 X 50131609 50131609 G A DGKK RNA 0.38 TCGA-CQ-7071-01 X 50556995 50556995 G T SHROOM4 Missense_Mutation p.F8L 0.27 deleterious(0.02) benign(0.115) TCGA-CQ-7071-01 X 53106005 53106005 G A GPR173 Missense_Mutation p.D68N 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-CQ-7071-01 X 53225148 53225148 C A KDM5C Nonsense_Mutation p.E1024* 0.33 TCGA-CQ-7071-01 X 53572036 53572036 C T HUWE1 Missense_Mutation p.E3668K 0.41 unknown(0) TCGA-CQ-7071-01 X 54099642 54099642 C T FAM120C Missense_Mutation p.A1039T 0.22 tolerated_low_confidence(1) benign(0.001) TCGA-CQ-7071-01 X 65486346 65486346 G C HEPH Missense_Mutation p.K1157N 0.37 tolerated(0.1) benign(0.258) TCGA-CQ-7071-01 X 69459589 69459589 C T AWAT1 Missense_Mutation p.H213Y 0.28 tolerated(0.98) benign(0.059) TCGA-CQ-7071-01 X 70824220 70824220 G C ACRC Missense_Mutation p.D365H 0.23 unknown(0) TCGA-CQ-7071-01 X 75650102 75650102 G A MAGEE1 Silent p.L593L 0.18 TCGA-CQ-7071-01 X 79286536 79286536 G A TBX22 Missense_Mutation p.D497N 0.20 tolerated(0.96) benign(0) TCGA-CQ-7071-01 X 84363898 84363898 G C SATL1 Nonsense_Mutation p.S26* 0.29 TCGA-CQ-7071-01 X 99662473 99662473 C A PCDH19 Missense_Mutation p.D375Y 0.30 deleterious(0) probably_damaging(1) TCGA-CQ-7072-01 10 118423603 118423603 C T C10orf82 3'UTR 0.20 TCGA-CQ-7072-01 10 15145770 15145770 A C RPP38 Missense_Mutation p.S153R 0.11 deleterious(0) probably_damaging(0.985) TCGA-CQ-7072-01 10 83635736 83635736 G T NRG3 Nonsense_Mutation p.G214* 0.16 TCGA-CQ-7072-01 11 103907469 103907469 G A DDI1 5'UTR 0.06 TCGA-CQ-7072-01 11 1103214 1103214 A G MUC2 Missense_Mutation p.K2655R 0.15 unknown(0) TCGA-CQ-7072-01 11 118955659 118955659 G T HMBS 5'UTR 0.12 TCGA-CQ-7072-01 11 34937879 34937879 C T APIP 5'UTR 0.14 TCGA-CQ-7072-01 11 55135817 55135817 C T OR4A15 Missense_Mutation p.A153V 0.25 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CQ-7072-01 11 65116374 65116374 C T DPF2 Silent p.L357L 0.15 TCGA-CQ-7072-01 11 66322613 66322613 C A CTD-3074O7.2 3'Flank 0.08 TCGA-CQ-7072-01 11 75439906 75439906 C T MOGAT2 Missense_Mutation p.S241F 0.20 deleterious(0.03) benign(0.35) TCGA-CQ-7072-01 11 85396727 85396727 C A CCDC89 Missense_Mutation p.K149N 0.34 deleterious(0.02) possibly_damaging(0.598) TCGA-CQ-7072-01 11 92087380 92087380 A C FAT3 Missense_Mutation p.K701T 0.26 benign(0.317) TCGA-CQ-7072-01 12 122079278 122079278 C A ORAI1 Missense_Mutation p.T214N 0.20 tolerated_low_confidence(0.15) benign(0.125) TCGA-CQ-7072-01 12 129563105 129563105 G C TMEM132D Missense_Mutation p.Q697E 0.15 tolerated(0.31) benign(0.075) TCGA-CQ-7072-01 12 21028329 21028329 G A SLCO1B3 Silent p.L296L 0.20 TCGA-CQ-7072-01 12 39751240 39751240 C A KIF21A Splice_Site p.X406_splice 0.24 TCGA-CQ-7072-01 12 46316909 46316909 T C SCAF11 Missense_Mutation p.N1312S 0.20 tolerated(0.18) benign(0.056) TCGA-CQ-7072-01 12 48362128 48362129 - T TMEM106C 3'UTR 0.38 TCGA-CQ-7072-01 12 51901207 51901207 C T SLC4A8 Intron 0.14 TCGA-CQ-7072-01 12 53898227 53898228 - A TARBP2 Frame_Shift_Ins p.C158Vfs*46 0.23 TCGA-CQ-7072-01 12 56481609 56481609 A G ERBB3 Missense_Mutation p.N215S 0.28 tolerated(0.34) benign(0.376) TCGA-CQ-7072-01 12 71978572 71978572 T C LGR5 3'UTR 0.23 TCGA-CQ-7072-01 12 78452894 78452894 A T NAV3 Missense_Mutation p.S879C 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-CQ-7072-01 13 108518105 108518105 T C FAM155A Silent p.E280E 0.49 TCGA-CQ-7072-01 13 23905822 23905822 T A SACS Missense_Mutation p.I4065F 0.43 probably_damaging(0.986) TCGA-CQ-7072-01 13 32691468 32691468 T C FRY Intron 0.43 TCGA-CQ-7072-01 13 53217364 53217364 G T HNRNPA1L2 Missense_Mutation p.G246V 0.17 deleterious(0.01) unknown(0) TCGA-CQ-7072-01 13 70293535 70293535 T A KLHL1 Missense_Mutation p.N661Y 0.49 deleterious(0.02) benign(0.366) TCGA-CQ-7072-01 13 77779509 77779509 C T MYCBP2 Missense_Mutation p.G1204E 0.53 probably_damaging(0.999) TCGA-CQ-7072-01 14 105415896 105415896 C T AHNAK2 Silent p.K1964K 0.30 TCGA-CQ-7072-01 14 105677625 105677625 C A BRF1 Missense_Mutation p.L610F 0.09 tolerated(0.56) benign(0.003) TCGA-CQ-7072-01 14 31572142 31572142 C T HECTD1 Silent p.K2510K 0.19 TCGA-CQ-7072-01 14 31590677 31590677 C A HECTD1 Missense_Mutation p.G1717V 0.30 deleterious_low_confidence(0.05) benign(0.002) TCGA-CQ-7072-01 14 76488695 76488695 G A IFT43 Missense_Mutation p.C58Y 0.41 tolerated(0.12) benign(0.388) TCGA-CQ-7072-01 14 77229171 77229171 G C VASH1 Missense_Mutation p.G3R 0.19 tolerated_low_confidence(0.06) unknown(0) TCGA-CQ-7072-01 14 94517468 94517468 G A DDX24 3'UTR 0.09 TCGA-CQ-7072-01 14 96782897 96782897 A G ATG2B Missense_Mutation p.S1112P 0.18 deleterious(0.01) probably_damaging(0.939) TCGA-CQ-7072-01 15 20490523 20490523 G C CHEK2P2 RNA 0.06 TCGA-CQ-7072-01 16 1561057 1561057 C T IFT140 Missense_Mutation p.G1426E 0.10 tolerated(0.14) benign(0.015) TCGA-CQ-7072-01 16 30780842 30780842 G A RNF40 Missense_Mutation p.R836Q 0.31 tolerated(0.09) benign(0.077) TCGA-CQ-7072-01 16 31121723 31121723 A T BCKDK Missense_Mutation p.D182V 0.27 tolerated(0.12) possibly_damaging(0.732) TCGA-CQ-7072-01 16 55730148 55730148 G T SLC6A2 Missense_Mutation p.V387L 0.23 tolerated(0.35) benign(0.012) TCGA-CQ-7072-01 16 597220 597220 G A CAPN15 Missense_Mutation p.E128K 0.30 tolerated_low_confidence(0.57) benign(0.003) TCGA-CQ-7072-01 16 66592200 66592200 A T CKLF Missense_Mutation p.L62F 0.34 deleterious(0.02) probably_damaging(0.988) TCGA-CQ-7072-01 16 69056866 69056866 G A TANGO6 Missense_Mutation p.G993D 0.20 deleterious(0) benign(0.418) TCGA-CQ-7072-01 16 71098723 71098723 T G HYDIN Missense_Mutation p.H699P 0.17 benign(0.244) TCGA-CQ-7072-01 16 77775623 77775623 C T NUDT7 Missense_Mutation p.R165C 0.11 tolerated(0.17) possibly_damaging(0.773) TCGA-CQ-7072-01 17 10356159 10356159 C T MYH4 Missense_Mutation p.E1068K 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-CQ-7072-01 17 1555043 1555043 G C PRPF8 Missense_Mutation p.P2137A 0.26 tolerated(0.12) benign(0.002) TCGA-CQ-7072-01 17 1585429 1585429 T G PRPF8 Missense_Mutation p.Q143P 0.26 deleterious(0) probably_damaging(0.999) TCGA-CQ-7072-01 17 19561060 19561060 G T ALDH3A2 Missense_Mutation p.R228L 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-CQ-7072-01 17 27068430 27068430 G A NEK8 Splice_Site p.X631_splice 0.20 TCGA-CQ-7072-01 17 40870501 40870501 C T EZH1 Missense_Mutation p.R301H 0.16 deleterious(0) probably_damaging(0.991) TCGA-CQ-7072-01 17 45299098 45299098 C T MYL4 Missense_Mutation p.H122Y 0.23 tolerated(0.32) probably_damaging(0.916) TCGA-CQ-7072-01 17 62856536 62856536 G A LRRC37A3 Missense_Mutation p.A1243V 0.28 tolerated(0.15) probably_damaging(0.979) TCGA-CQ-7072-01 17 64128831 64128831 G A CEP112 Missense_Mutation p.P174L 0.17 tolerated(0.16) benign(0.006) TCGA-CQ-7072-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.62 deleterious(0) probably_damaging(0.997) TCGA-CQ-7072-01 18 28923454 28923454 C T DSG1 Missense_Mutation p.P577S 0.23 tolerated(0.16) benign(0.014) TCGA-CQ-7072-01 18 42530804 42530804 C T SETBP1 Missense_Mutation p.P500L 0.30 deleterious(0.01) benign(0.004) TCGA-CQ-7072-01 19 1007862 1007862 C G GRIN3B Missense_Mutation p.P736A 0.21 deleterious(0.01) possibly_damaging(0.653) TCGA-CQ-7072-01 19 10249128 10249128 T C DNMT1 Missense_Mutation p.S1368G 0.19 tolerated(0.06) benign(0.044) TCGA-CQ-7072-01 19 1383927 1383927 T C NDUFS7 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) benign(0.01) TCGA-CQ-7072-01 19 18545850 18545850 C T ISYNA1 Missense_Mutation p.R517Q 0.19 tolerated_low_confidence(0.31) benign(0.001) TCGA-CQ-7072-01 19 30935718 30935718 G A ZNF536 Missense_Mutation p.G417S 0.48 tolerated(0.69) benign(0.001) TCGA-CQ-7072-01 19 40368659 40368659 A G FCGBP Missense_Mutation p.F4230S 0.07 possibly_damaging(0.637) TCGA-CQ-7072-01 19 43969776 43969776 G T LYPD3 5'UTR 0.26 TCGA-CQ-7072-01 19 54969111 54969111 A G LENG8 Splice_Site p.X612_splice 0.28 TCGA-CQ-7072-01 19 54973894 54973894 T A LENG9 Missense_Mutation p.E294D 0.14 tolerated(0.2) benign(0.002) TCGA-CQ-7072-01 19 57176162 57176162 C A ZNF835 Missense_Mutation p.E135D 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-CQ-7072-01 19 58187875 58187875 A T ZSCAN4 Missense_Mutation p.D121V 0.28 deleterious(0) possibly_damaging(0.867) TCGA-CQ-7072-01 19 964396 964396 G A ARID3A Silent p.T305T 0.54 TCGA-CQ-7072-01 1 165218665 165218665 C T LMX1A Missense_Mutation p.S159N 0.09 deleterious(0) probably_damaging(0.985) TCGA-CQ-7072-01 1 169526091 169526091 C A F5 Missense_Mutation p.A249S 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-CQ-7072-01 1 207104874 207104874 T C PIGR Missense_Mutation p.T723A 0.17 tolerated(0.81) benign(0.007) TCGA-CQ-7072-01 1 207891009 207891009 C T CR1L Missense_Mutation p.P539S 0.27 deleterious(0.05) probably_damaging(0.996) TCGA-CQ-7072-01 1 227071565 227071565 G A PSEN2 Missense_Mutation p.V101M 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-CQ-7072-01 1 32381528 32381528 C T PTP4A2 Missense_Mutation p.A53T 0.10 tolerated(0.63) benign(0.02) TCGA-CQ-7072-01 1 32503572 32503572 C T KHDRBS1 Missense_Mutation p.R348W 0.14 deleterious(0) probably_damaging(0.919) TCGA-CQ-7072-01 1 94463633 94463633 G T ABCA4 Silent p.I2171I 0.33 TCGA-CQ-7072-01 1 95657222 95657222 G T TMEM56 Missense_Mutation p.G197V 0.34 tolerated(0.47) benign(0.026) TCGA-CQ-7072-01 20 25450670 25450670 G A NINL Missense_Mutation p.R1104W 0.15 deleterious(0) possibly_damaging(0.824) TCGA-CQ-7072-01 20 33232018 33232018 G C PIGU Missense_Mutation p.L90V 0.12 deleterious(0.03) benign(0.136) TCGA-CQ-7072-01 20 60856119 60856119 A G OSBPL2 Missense_Mutation p.N227S 0.23 tolerated(0.11) benign(0.014) TCGA-CQ-7072-01 20 9525046 9525046 C T PAK7 Silent p.E613E 0.08 TCGA-CQ-7072-01 21 41447099 41447099 C A DSCAM Nonsense_Mutation p.E1585* 0.25 TCGA-CQ-7072-01 21 46047708 46047708 C G KRTAP10-9 Missense_Mutation p.S207C 0.35 deleterious(0.05) possibly_damaging(0.7) TCGA-CQ-7072-01 22 17071795 17071795 G A CCT8L2 Missense_Mutation p.T549I 0.20 deleterious_low_confidence(0.04) benign(0) TCGA-CQ-7072-01 2 111850481 111850481 C T ACOXL Missense_Mutation p.R494W 0.25 deleterious(0) benign(0.026) TCGA-CQ-7072-01 2 112942821 112942821 G A FBLN7 Silent p.G284G 0.22 TCGA-CQ-7072-01 2 11802117 11802117 G A NTSR2 Missense_Mutation p.L292F 0.29 deleterious(0) probably_damaging(0.998) TCGA-CQ-7072-01 2 125367399 125367399 A T CNTNAP5 Missense_Mutation p.E592V 0.33 deleterious(0) possibly_damaging(0.883) TCGA-CQ-7072-01 2 148705676 148705676 G T ORC4 Missense_Mutation p.L236I 0.36 tolerated(0.13) possibly_damaging(0.831) TCGA-CQ-7072-01 2 149847618 149847618 G A KIF5C Missense_Mutation p.R604H 0.24 deleterious(0.05) benign(0.308) TCGA-CQ-7072-01 2 1664701 1664701 G A PXDN Missense_Mutation p.R597W 0.09 deleterious(0) benign(0.348) TCGA-CQ-7072-01 2 176995356 176995356 G A HOXD8 Missense_Mutation p.G88S 0.21 tolerated(0.36) benign(0.022) TCGA-CQ-7072-01 2 197583259 197583259 G T CCDC150 Missense_Mutation p.E633D 0.42 tolerated(0.44) possibly_damaging(0.587) TCGA-CQ-7072-01 2 215838749 215838749 T C ABCA12 Missense_Mutation p.D1829G 0.16 tolerated(0.15) benign(0.001) TCGA-CQ-7072-01 2 27657998 27657998 A T NRBP1 Splice_Site p.X189_splice 0.16 TCGA-CQ-7072-01 2 5832797 5832797 G T SOX11 5'Flank 0.23 TCGA-CQ-7072-01 2 61415591 61415597 ATTTGAC - USP34 Frame_Shift_Del p.M3427Ifs*33 0.22 TCGA-CQ-7072-01 2 68607936 68607936 C T PLEK Missense_Mutation p.R94W 0.12 deleterious(0.02) possibly_damaging(0.883) TCGA-CQ-7072-01 2 86327274 86327274 A C POLR1A Missense_Mutation p.I33M 0.13 deleterious(0) probably_damaging(0.99) TCGA-CQ-7072-01 3 119812313 119812313 C T GSK3B 5'UTR 0.30 TCGA-CQ-7072-01 3 127379826 127379826 G A PODXL2 Missense_Mutation p.E319K 0.24 tolerated(0.15) benign(0.016) TCGA-CQ-7072-01 3 143708394 143708394 A T C3orf58 Missense_Mutation p.D335V 0.28 deleterious(0) possibly_damaging(0.572) TCGA-CQ-7072-01 3 147128206 147128206 C G ZIC1 Missense_Mutation p.R103G 0.28 deleterious(0.04) possibly_damaging(0.904) TCGA-CQ-7072-01 3 151165724 151165724 T C IGSF10 Missense_Mutation p.D682G 0.09 tolerated(0.33) benign(0.009) TCGA-CQ-7072-01 3 27442319 27442319 A G SLC4A7 Missense_Mutation p.L779P 0.33 deleterious(0.01) possibly_damaging(0.701) TCGA-CQ-7072-01 3 49153322 49153322 T C USP19 Silent p.S507S 0.34 TCGA-CQ-7072-01 4 110451618 110451618 C G SEC24B Missense_Mutation p.Q1084E 0.18 deleterious(0.01) possibly_damaging(0.592) TCGA-CQ-7072-01 4 20512713 20512713 T C SLIT2 Silent p.S337S 0.29 TCGA-CQ-7072-01 5 137753297 137753297 C A KDM3B Missense_Mutation p.Q1145K 0.21 deleterious(0.02) benign(0.341) TCGA-CQ-7072-01 5 176637435 176637435 C T NSD1 Nonsense_Mutation p.Q679* 0.16 TCGA-CQ-7072-01 5 176639165 176639165 T - NSD1 Frame_Shift_Del p.L1256* 0.19 TCGA-CQ-7072-01 5 1878823 1878823 C A IRX4 Nonsense_Mutation p.E274* 0.22 TCGA-CQ-7072-01 5 840588 840588 G A ZDHHC11 Intron 0.11 TCGA-CQ-7072-01 6 110714071 110714071 G T DDO Silent p.I339I 0.24 TCGA-CQ-7072-01 6 131184794 131184794 T A EPB41L2 Missense_Mutation p.D965V 0.10 deleterious(0) probably_damaging(0.999) TCGA-CQ-7072-01 6 137325845 137325845 T A IL20RA Silent p.V259V 0.31 TCGA-CQ-7072-01 6 143810326 143810326 A C PEX3 Missense_Mutation p.Y362S 0.20 deleterious(0) probably_damaging(0.995) TCGA-CQ-7072-01 6 152841661 152841661 C T SYNE1 Missense_Mutation p.R81H 0.10 benign(0.082) TCGA-CQ-7072-01 6 168226351 168226351 C A MLLT4 5'Flank 0.16 TCGA-CQ-7072-01 6 34826309 34826309 A G UHRF1BP1 Missense_Mutation p.I726V 0.32 tolerated(0.45) benign(0.002) TCGA-CQ-7072-01 7 122338281 122338281 T C RNF133 Missense_Mutation p.Q231R 0.34 tolerated(0.05) benign(0) TCGA-CQ-7072-01 7 123150065 123150065 C G IQUB Missense_Mutation p.G141A 0.13 tolerated(0.26) benign(0.009) TCGA-CQ-7072-01 7 138265313 138265313 G A TRIM24 Silent p.E864E 0.11 TCGA-CQ-7072-01 7 142239700 142239700 C T TRBV9 Silent p.Q60Q 0.36 TCGA-CQ-7072-01 7 155534530 155534530 T C RBM33 Silent p.N689N 0.45 TCGA-CQ-7072-01 7 29438072 29438072 G A CHN2 Missense_Mutation p.R87Q 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-CQ-7072-01 7 48019014 48019014 T C HUS1 Intron 0.19 TCGA-CQ-7072-01 7 49951682 49951682 G T VWC2 Missense_Mutation p.K293N 0.20 tolerated(0.09) possibly_damaging(0.767) TCGA-CQ-7072-01 7 56084927 56084927 C A PSPH Missense_Mutation p.G141C 0.06 deleterious(0) probably_damaging(1) TCGA-CQ-7072-01 7 62753183 62753183 G T ZNF733P RNA 0.30 TCGA-CQ-7072-01 7 647052 647052 C T PRKAR1B Missense_Mutation p.A160T 0.05 tolerated(0.08) benign(0.432) TCGA-CQ-7072-01 7 82451849 82451849 G T PCLO Missense_Mutation p.A4918D 0.38 unknown(0) TCGA-CQ-7072-01 7 91672001 91672001 G T AKAP9 Missense_Mutation p.G1693V 0.41 benign(0.009) TCGA-CQ-7072-01 7 99170042 99170042 G A ZNF655 Missense_Mutation p.R139K 0.09 tolerated(0.27) benign(0.14) TCGA-CQ-7072-01 8 104948826 104948826 C T RIMS2 Missense_Mutation p.P808L 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-CQ-7072-01 8 105509420 105509420 C T LRP12 Missense_Mutation p.G454R 0.23 deleterious(0) probably_damaging(0.995) TCGA-CQ-7072-01 8 131181242 131181242 T C ASAP1 Missense_Mutation p.Y273C 0.35 tolerated(0.06) probably_damaging(0.984) TCGA-CQ-7072-01 8 141461050 141461050 G A TRAPPC9 Silent p.C239C 0.27 TCGA-CQ-7072-01 8 55537873 55537873 G T RP1 Missense_Mutation p.E477D 0.19 deleterious(0) probably_damaging(0.996) TCGA-CQ-7072-01 8 61743066 61743097 TAACGTACCTAACCTATTAAACACTATGATGG - CHD7 Frame_Shift_Del p.N1237Ifs*15 0.15 TCGA-CQ-7072-01 9 107457357 107457357 C G OR13D1 Missense_Mutation p.L219V 0.13 deleterious(0.01) benign(0.181) TCGA-CQ-7072-01 9 77407569 77407569 C T TRPM6 Missense_Mutation p.A837T 0.16 deleterious(0.03) possibly_damaging(0.45) TCGA-CQ-7072-01 X 110406906 110406906 G A PAK3 Silent p.R275R 0.26 TCGA-CQ-7072-01 X 30269040 30269040 G A MAGEB1 Missense_Mutation p.D144N 0.41 tolerated(0.88) benign(0.348) TCGA-CQ-7072-01 X 75004845 75004845 C G MAGEE2 Missense_Mutation p.E14D 0.49 tolerated_low_confidence(0.25) benign(0.003) TCGA-CQ-7072-01 X 91873684 91873684 G T PCDH11X Missense_Mutation p.Q1263H 0.55 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CQ-A4C6-01 10 106899195 106899195 G A SORCS3 Missense_Mutation p.R418Q 0.21 tolerated(0.07) benign(0.025) TCGA-CQ-A4C6-01 10 118327287 118327287 C A PNLIP Missense_Mutation p.L459M 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-CQ-A4C6-01 10 119134268 119134268 G A PDZD8 Silent p.I157I 0.21 TCGA-CQ-A4C6-01 10 38660047 38660047 C T HSD17B7P2 RNA 0.29 TCGA-CQ-A4C6-01 10 6261636 6261636 C G PFKFB3 Silent p.L201L 0.14 TCGA-CQ-A4C6-01 10 64974633 64974633 G A JMJD1C Missense_Mutation p.P432S 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-CQ-A4C6-01 10 75406500 75406500 C G SYNPO2L Missense_Mutation p.W970C 0.20 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4C6-01 10 87614258 87614258 G A GRID1 Missense_Mutation p.R410C 0.10 deleterious(0) possibly_damaging(0.724) TCGA-CQ-A4C6-01 11 124637018 124637018 G C MSANTD2 3'UTR 0.20 TCGA-CQ-A4C6-01 11 20178646 20178646 C T DBX1 Silent p.Q203Q 0.12 TCGA-CQ-A4C6-01 11 45827445 45827445 G A SLC35C1 Silent p.E31E 0.14 TCGA-CQ-A4C6-01 11 47436224 47436224 G A SLC39A13 Intron 0.29 TCGA-CQ-A4C6-01 11 6292155 6292155 G C CCKBR Intron 0.19 TCGA-CQ-A4C6-01 11 70052566 70052566 C A FADD Missense_Mutation p.S205Y 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.77) TCGA-CQ-A4C6-01 12 13140018 13140018 G C HEBP1 Intron 0.14 TCGA-CQ-A4C6-01 12 133306796 133306796 A G ANKLE2 Missense_Mutation p.I651T 0.12 deleterious(0.03) benign(0.025) TCGA-CQ-A4C6-01 12 33031419 33031419 G A PKP2 Missense_Mutation p.S132F 0.20 deleterious(0.01) probably_damaging(0.95) TCGA-CQ-A4C6-01 12 49717952 49717952 C G TROAP Intron 0.14 TCGA-CQ-A4C6-01 12 81110932 81110932 C T MYF5 Silent p.D30D 0.23 TCGA-CQ-A4C6-01 12 97073407 97073407 G A C12orf55 Missense_Mutation p.V1865M 0.18 deleterious(0) possibly_damaging(0.815) TCGA-CQ-A4C6-01 12 98993752 98993752 C T SLC25A3 Missense_Mutation p.P222S 0.12 deleterious(0.01) probably_damaging(0.951) TCGA-CQ-A4C6-01 13 28014163 28014163 C G MTIF3 Missense_Mutation p.Q141H 0.20 deleterious(0) possibly_damaging(0.663) TCGA-CQ-A4C6-01 14 33293956 33293956 C T AKAP6 Nonsense_Mutation p.R2313* 0.31 TCGA-CQ-A4C6-01 14 75747960 75747960 C T FOS Missense_Mutation p.P326S 0.14 deleterious(0.04) probably_damaging(1) TCGA-CQ-A4C6-01 15 44858160 44858160 C G SPG11 Missense_Mutation p.L2297F 0.13 deleterious(0) probably_damaging(0.934) TCGA-CQ-A4C6-01 15 75901925 75901925 C T SNUPN Missense_Mutation p.G159D 0.18 deleterious(0) probably_damaging(0.93) TCGA-CQ-A4C6-01 15 75901988 75901988 G A SNUPN Missense_Mutation p.S138F 0.16 tolerated(0.19) benign(0.003) TCGA-CQ-A4C6-01 16 15817894 15817894 C T NDE1 Intron 0.32 TCGA-CQ-A4C6-01 16 15818249 15818249 C T MYH11 Silent p.K1385K 0.10 TCGA-CQ-A4C6-01 16 30038047 30038047 G A FAM57B Silent p.D109D 0.10 TCGA-CQ-A4C6-01 16 30038054 30038054 C T FAM57B Missense_Mutation p.G107E 0.10 tolerated(0.54) benign(0.207) TCGA-CQ-A4C6-01 16 67580442 67580442 G A FAM65A 3'UTR 0.23 TCGA-CQ-A4C6-01 16 81211499 81211499 C T PKD1L2 Intron 0.17 TCGA-CQ-A4C6-01 16 81211502 81211502 C T PKD1L2 Intron 0.18 TCGA-CQ-A4C6-01 16 84256345 84256345 G A KCNG4 Silent p.Y346Y 0.20 TCGA-CQ-A4C6-01 17 56621550 56621550 G C C17orf47 5'UTR 0.15 TCGA-CQ-A4C6-01 17 66246328 66246328 G C AMZ2 Splice_Site p.X1_splice 0.41 TCGA-CQ-A4C6-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.52 TCGA-CQ-A4C6-01 18 13826231 13826231 C T MC5R Missense_Mutation p.A156V 0.23 tolerated(0.86) benign(0.01) TCGA-CQ-A4C6-01 19 16860197 16860197 C T NWD1 Silent p.R248R 0.16 TCGA-CQ-A4C6-01 19 17476143 17476143 C T PLVAP Missense_Mutation p.M377I 0.12 tolerated(0.38) benign(0.01) TCGA-CQ-A4C6-01 19 17476278 17476278 C T PLVAP Silent p.R332R 0.12 TCGA-CQ-A4C6-01 19 20003622 20003622 C G ZNF253 3'UTR 0.12 TCGA-CQ-A4C6-01 19 2120998 2120998 C T AP3D1 Silent p.V448V 0.25 TCGA-CQ-A4C6-01 19 35450419 35450419 C T ZNF792 Missense_Mutation p.E114K 0.23 tolerated(0.17) benign(0.006) TCGA-CQ-A4C6-01 19 39108455 39108455 C T MAP4K1 Silent p.T27T 0.18 TCGA-CQ-A4C6-01 19 49933761 49933761 G A SLC17A7 3'UTR 0.23 TCGA-CQ-A4C6-01 19 50826952 50826952 G A KCNC3 Missense_Mutation p.R420C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4C6-01 19 5133893 5133893 G T KDM4B Splice_Site p.X636_splice 0.21 TCGA-CQ-A4C6-01 1 117568409 117568409 G A CD101 Missense_Mutation p.D903N 0.13 deleterious(0) probably_damaging(0.939) TCGA-CQ-A4C6-01 1 11888618 11888618 G A CLCN6 Missense_Mutation p.C353Y 0.15 tolerated(0.52) possibly_damaging(0.836) TCGA-CQ-A4C6-01 1 154303399 154303399 C G ATP8B2 Missense_Mutation p.L100V 0.16 deleterious(0) probably_damaging(0.99) TCGA-CQ-A4C6-01 1 155289471 155289471 C T FDPS Nonsense_Mutation p.Q306* 0.18 TCGA-CQ-A4C6-01 1 155931566 155931566 G A ARHGEF2 Missense_Mutation p.R452W 0.26 deleterious(0) probably_damaging(0.987) TCGA-CQ-A4C6-01 1 183519946 183519946 C G SMG7 Missense_Mutation p.S1019C 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CQ-A4C6-01 1 196879600 196879600 C T CFHR4 Missense_Mutation p.P329L 0.11 tolerated(0.1) possibly_damaging(0.878) TCGA-CQ-A4C6-01 1 202406976 202406976 G C PPP1R12B Missense_Mutation p.E428Q 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-CQ-A4C6-01 1 204588012 204588012 G C LRRN2 Missense_Mutation p.P370R 0.12 deleterious(0) probably_damaging(1) TCGA-CQ-A4C6-01 1 207107783 207107783 C G PIGR Missense_Mutation p.E563Q 0.20 tolerated(0.18) benign(0.093) TCGA-CQ-A4C6-01 1 214551380 214551380 C G PTPN14 Missense_Mutation p.L870F 0.22 deleterious(0) probably_damaging(0.994) TCGA-CQ-A4C6-01 1 235973763 235973763 G T LYST Missense_Mutation p.Q119K 0.19 tolerated_low_confidence(0.11) probably_damaging(0.953) TCGA-CQ-A4C6-01 1 237948018 237948018 G C RYR2 Missense_Mutation p.D4336H 0.14 probably_damaging(0.995) TCGA-CQ-A4C6-01 1 29651700 29651700 C T PTPRU Intron 0.18 TCGA-CQ-A4C6-01 1 33149665 33149665 C T SYNC Missense_Mutation p.E462K 0.15 deleterious_low_confidence(0.01) benign(0.037) TCGA-CQ-A4C6-01 1 36929427 36929427 C T MRPS15 Missense_Mutation p.G52E 0.09 tolerated(0.25) benign(0.035) TCGA-CQ-A4C6-01 1 39908187 39908187 G C MACF1 Missense_Mutation p.R4292T 0.25 possibly_damaging(0.839) TCGA-CQ-A4C6-01 1 52896759 52896759 G A ZCCHC11 Missense_Mutation p.T1546M 0.13 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-CQ-A4C6-01 20 18142736 18142736 G C CSRP2BP Missense_Mutation p.D319H 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-CQ-A4C6-01 20 31761968 31761968 T A BPIFA2 Missense_Mutation p.V129D 0.21 deleterious(0) probably_damaging(0.959) TCGA-CQ-A4C6-01 20 34572690 34572690 G A CNBD2 Missense_Mutation p.E236K 0.17 tolerated(0.22) benign(0.007) TCGA-CQ-A4C6-01 20 36841935 36841935 G A KIAA1755 Missense_Mutation p.R1038W 0.41 tolerated(0.22) benign(0.003) TCGA-CQ-A4C6-01 20 43835661 43835661 C T SEMG1 5'UTR 0.10 TCGA-CQ-A4C6-01 21 44845977 44845977 C A SIK1 Missense_Mutation p.D28Y 0.44 deleterious(0) probably_damaging(1) TCGA-CQ-A4C6-01 22 26951231 26951231 G A TPST2 Intron 0.17 TCGA-CQ-A4C6-01 22 36685215 36685215 C T MYH9 Silent p.Q1491Q 0.24 TCGA-CQ-A4C6-01 2 136422987 136422987 C A R3HDM1 Intron 0.15 TCGA-CQ-A4C6-01 2 136467655 136467655 G A R3HDM1 Missense_Mutation p.G829R 0.22 deleterious(0.01) probably_damaging(1) TCGA-CQ-A4C6-01 2 165994547 165994547 C A SCN3A Missense_Mutation p.A745S 0.09 tolerated(0.4) benign(0.047) TCGA-CQ-A4C6-01 2 185801399 185801399 G T ZNF804A Missense_Mutation p.V426L 0.11 deleterious(0.01) benign(0.06) TCGA-CQ-A4C6-01 2 220091655 220091655 C T ATG9A Missense_Mutation p.V50I 0.16 tolerated(0.75) benign(0.002) TCGA-CQ-A4C6-01 2 230675762 230675762 C G TRIP12 Splice_Site p.X638_splice 0.10 TCGA-CQ-A4C6-01 2 61415605 61415605 C T USP34 Missense_Mutation p.E3425K 0.18 tolerated_low_confidence(0.18) benign(0.005) TCGA-CQ-A4C6-01 2 73518580 73518580 C G EGR4 3'UTR 0.27 TCGA-CQ-A4C6-01 2 74709223 74709223 C T CCDC142 Missense_Mutation p.A248T 0.23 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4C6-01 2 8931278 8931278 G A KIDINS220 Silent p.L451L 0.16 TCGA-CQ-A4C6-01 2 97370228 97370228 C G LMAN2L 3'Flank 0.12 TCGA-CQ-A4C6-01 3 119526249 119526249 A G NR1I2 Missense_Mutation p.Y90C 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-A4C6-01 3 172003756 172003756 G A FNDC3B Silent p.S277S 0.25 TCGA-CQ-A4C6-01 3 178952072 178952072 A G PIK3CA Missense_Mutation p.M1043V 0.22 tolerated(0.06) benign(0.037) TCGA-CQ-A4C6-01 3 187089110 187089110 C A RTP4 Silent p.V230V 0.23 TCGA-CQ-A4C6-01 3 5164258 5164258 C A ARL8B Missense_Mutation p.F36L 0.08 tolerated(1) benign(0.025) TCGA-CQ-A4C6-01 3 52084899 52084899 C T DUSP7 Missense_Mutation p.E398K 0.21 tolerated(0.11) benign(0.017) TCGA-CQ-A4C6-01 3 58111340 58111340 G A FLNB Missense_Mutation p.V1311M 0.11 tolerated(0.07) benign(0.017) TCGA-CQ-A4C6-01 3 65376868 65376868 G T MAGI1 Missense_Mutation p.P789T 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-CQ-A4C6-01 4 122722497 122722497 G A EXOSC9 5'UTR 0.17 TCGA-CQ-A4C6-01 4 146059380 146059380 G A OTUD4 Silent p.G784G 0.07 TCGA-CQ-A4C6-01 4 40439899 40439899 C T RBM47 Missense_Mutation p.E338K 0.25 tolerated(0.6) benign(0.033) TCGA-CQ-A4C6-01 4 46737152 46737152 G C COX7B2 Missense_Mutation p.Q20E 0.21 deleterious(0.02) benign(0.232) TCGA-CQ-A4C6-01 4 47939336 47939336 A T CNGA1 Missense_Mutation p.I461N 0.16 deleterious(0) probably_damaging(0.986) TCGA-CQ-A4C6-01 4 56847522 56847522 G A CEP135 Missense_Mutation p.E586K 0.11 deleterious(0) benign(0.423) TCGA-CQ-A4C6-01 4 57871560 57871560 A G POLR2B Missense_Mutation p.H350R 0.20 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4C6-01 4 78079685 78079685 G C CCNG2 Splice_Site p.X1_splice 0.13 TCGA-CQ-A4C6-01 4 80327777 80327777 G A GK2 Silent p.I526I 0.15 TCGA-CQ-A4C6-01 5 133295357 133295357 G A C5orf15 Missense_Mutation p.S165F 0.18 deleterious(0.04) benign(0.036) TCGA-CQ-A4C6-01 5 140516912 140516912 C T PCDHB5 Silent p.R632R 0.16 TCGA-CQ-A4C6-01 5 141248258 141248258 C T PCDH1 Missense_Mutation p.R260H 0.22 deleterious(0.03) probably_damaging(0.979) TCGA-CQ-A4C6-01 5 169535073 169535073 C G FOXI1 Missense_Mutation p.L199V 0.22 deleterious(0) possibly_damaging(0.867) TCGA-CQ-A4C6-01 5 34925420 34925420 G A BRIX1 Silent p.P294P 0.16 TCGA-CQ-A4C6-01 5 35991265 35991265 C T UGT3A1 Silent p.L26L 0.16 TCGA-CQ-A4C6-01 5 54403740 54403740 G A GZMA Missense_Mutation p.E112K 0.16 tolerated(0.1) benign(0.171) TCGA-CQ-A4C6-01 5 89924618 89924618 G T GPR98 Missense_Mutation p.R493L 0.24 benign(0.002) TCGA-CQ-A4C6-01 5 9629959 9629959 G A TAS2R1 Silent p.I62I 0.12 TCGA-CQ-A4C6-01 6 111306267 111306267 G A RPF2 Missense_Mutation p.E28K 0.24 deleterious(0) possibly_damaging(0.831) TCGA-CQ-A4C6-01 6 161470317 161470317 C G MAP3K4 Nonsense_Mutation p.S338* 0.14 TCGA-CQ-A4C6-01 6 31239532 31239532 C T HLA-C Missense_Mutation p.D63N 0.12 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-CQ-A4C6-01 6 41738461 41738461 C G FRS3 Missense_Mutation p.D459H 0.15 deleterious(0) probably_damaging(1) TCGA-CQ-A4C6-01 6 41738629 41738629 C G FRS3 Missense_Mutation p.D403H 0.16 deleterious(0) probably_damaging(1) TCGA-CQ-A4C6-01 6 7574933 7574933 G C DSP Missense_Mutation p.E781Q 0.22 possibly_damaging(0.608) TCGA-CQ-A4C6-01 6 76744439 76744439 A G IMPG1 Missense_Mutation p.Y123H 0.18 deleterious(0.01) benign(0.263) TCGA-CQ-A4C6-01 7 103197439 103197439 G T RELN Missense_Mutation p.Q1928K 0.16 deleterious(0) benign(0.089) TCGA-CQ-A4C6-01 7 117171067 117171067 C A CFTR Missense_Mutation p.L130I 0.11 deleterious(0.01) possibly_damaging(0.564) TCGA-CQ-A4C6-01 7 122000987 122000987 G C CADPS2 Missense_Mutation p.F1156L 0.14 tolerated(0.55) benign(0.05) TCGA-CQ-A4C6-01 7 155255189 155255189 C T EN2 Missense_Mutation p.T270M 0.17 deleterious(0) probably_damaging(0.995) TCGA-CQ-A4C6-01 7 35009087 35009087 G C DPY19L1 Missense_Mutation p.F251L 0.13 deleterious(0) probably_damaging(0.995) TCGA-CQ-A4C6-01 7 57522853 57522853 G A ZNF716 Missense_Mutation p.E81K 0.13 tolerated(0.1) benign(0.015) TCGA-CQ-A4C6-01 8 100829940 100829940 C T VPS13B Missense_Mutation p.T2782M 0.19 deleterious(0.01) possibly_damaging(0.791) TCGA-CQ-A4C6-01 8 117668241 117668241 C G EIF3H Missense_Mutation p.L187F 0.22 tolerated(0.09) benign(0.022) TCGA-CQ-A4C6-01 8 119634058 119634058 T C SAMD12 5'UTR 0.21 TCGA-CQ-A4C6-01 8 139629162 139629162 G A COL22A1 Missense_Mutation p.P1289S 0.12 unknown(0) TCGA-CQ-A4C6-01 8 57079223 57079223 A C PLAG1 Missense_Mutation p.M361R 0.17 deleterious(0.04) possibly_damaging(0.599) TCGA-CQ-A4C6-01 8 87081717 87081717 C A PSKH2 Missense_Mutation p.R45S 0.48 tolerated(0.13) benign(0.002) TCGA-CQ-A4C6-01 9 125681358 125681358 C G ZBTB26 Missense_Mutation p.E286Q 0.12 deleterious(0.01) benign(0.168) TCGA-CQ-A4C6-01 9 137600491 137600491 G C COL5A1 Intron 0.12 TCGA-CQ-A4C6-01 9 139412282 139412282 C T NOTCH1 Missense_Mutation p.E455K 0.38 deleterious(0) probably_damaging(1) TCGA-CQ-A4C6-01 9 139755093 139755093 C T MAMDC4 3'UTR 0.15 TCGA-CQ-A4C6-01 9 21971096 21971096 C A CDKN2A Nonsense_Mutation p.E88* 0.23 TCGA-CQ-A4C6-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.14 TCGA-CQ-A4C6-01 9 26935110 26935110 G A PLAA Missense_Mutation p.H82Y 0.16 deleterious(0.04) benign(0.016) TCGA-CQ-A4C6-01 9 3856103 3856103 C T GLIS3 Silent p.Q793Q 0.33 TCGA-CQ-A4C6-01 X 119070345 119070345 C T NKAP Silent p.R196R 0.27 TCGA-CQ-A4C6-01 X 153036775 153036775 C T PLXNB3 Missense_Mutation p.S778F 0.21 tolerated(0.07) benign(0.069) TCGA-CQ-A4C7-01 10 14950607 14950607 C T DCLRE1C Missense_Mutation p.E627K 0.18 tolerated_low_confidence(0.86) benign(0.001) TCGA-CQ-A4C7-01 10 38306271 38306271 G A ZNF33A Silent p.E69E 0.07 TCGA-CQ-A4C7-01 10 45798849 45798849 C G OR13A1 3'UTR 0.06 TCGA-CQ-A4C7-01 10 67862978 67862978 G T CTNNA3 Missense_Mutation p.D638E 0.20 tolerated(0.4) unknown(0) TCGA-CQ-A4C7-01 11 30032996 30032996 G C KCNA4 Silent p.V410V 0.07 TCGA-CQ-A4C7-01 11 43380578 43380578 T C TTC17 Missense_Mutation p.L25P 0.20 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-CQ-A4C7-01 11 56020573 56020573 C A OR5T3 Missense_Mutation p.H300N 0.06 tolerated(0.07) benign(0.071) TCGA-CQ-A4C7-01 11 63679869 63679869 C T RCOR2 Missense_Mutation p.E389K 0.13 deleterious(0.04) benign(0.082) TCGA-CQ-A4C7-01 11 65687307 65687307 G A DRAP1 Silent p.A33A 0.07 TCGA-CQ-A4C7-01 12 44917200 44917200 G A NELL2 Silent p.G674G 0.11 TCGA-CQ-A4C7-01 12 47472100 47472100 G A AMIGO2 Missense_Mutation p.P229L 0.23 deleterious(0.03) probably_damaging(0.913) TCGA-CQ-A4C7-01 12 550057 550057 C T CCDC77 Silent p.R405R 0.11 TCGA-CQ-A4C7-01 12 71148118 71148118 G C PTPRR Intron 0.22 TCGA-CQ-A4C7-01 12 8073944 8073944 G T SLC2A3 3'UTR 0.09 TCGA-CQ-A4C7-01 13 98828923 98828923 C T RNF113B Missense_Mutation p.D190N 0.19 deleterious(0.02) probably_damaging(0.932) TCGA-CQ-A4C7-01 14 24736895 24736895 C T RABGGTA Missense_Mutation p.E442K 0.24 deleterious(0.05) benign(0.098) TCGA-CQ-A4C7-01 14 38724551 38724551 C A CLEC14A Missense_Mutation p.C226F 0.23 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4C7-01 14 92353600 92353600 C T FBLN5 Missense_Mutation p.G226S 0.13 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4C7-01 14 93483111 93483111 G A ITPK1 Silent p.P52P 0.14 TCGA-CQ-A4C7-01 16 27363939 27363942 AGGG - IL4R Frame_Shift_Del p.R198Hfs*3 0.08 TCGA-CQ-A4C7-01 16 30666196 30666196 C T PRR14 Missense_Mutation p.S302F 0.09 deleterious(0.04) benign(0.022) TCGA-CQ-A4C7-01 16 9858783 9858783 C T GRIN2A Missense_Mutation p.G873E 0.08 deleterious(0) probably_damaging(1) TCGA-CQ-A4C7-01 17 33475352 33475352 G T UNC45B Missense_Mutation p.A24S 0.35 tolerated(0.46) benign(0.016) TCGA-CQ-A4C7-01 17 7577025 7577025 T A TP53 Nonsense_Mutation p.K305* 0.51 TCGA-CQ-A4C7-01 18 21511041 21511041 G A LAMA3 Missense_Mutation p.V2818I 0.31 benign(0.042) TCGA-CQ-A4C7-01 18 45395747 45395747 G A SMAD2 Silent p.C129C 0.14 TCGA-CQ-A4C7-01 19 23543067 23543067 G C ZNF91 Missense_Mutation p.T905S 0.12 tolerated(0.1) benign(0.165) TCGA-CQ-A4C7-01 19 50969523 50969523 C T MYBPC2 3'UTR 0.21 TCGA-CQ-A4C7-01 19 53958230 53958230 G A ZNF761 RNA 0.07 TCGA-CQ-A4C7-01 19 55176273 55176273 T C LILRB4 Missense_Mutation p.S227P 0.17 tolerated(1) benign(0.002) TCGA-CQ-A4C7-01 19 56538774 56538774 G A NLRP5 Missense_Mutation p.R392H 0.22 tolerated(0.79) benign(0.003) TCGA-CQ-A4C7-01 19 56903194 56903194 C T ZNF582 5'UTR 0.10 TCGA-CQ-A4C7-01 19 58420104 58420104 A G ZNF417 Silent p.H514H 0.22 TCGA-CQ-A4C7-01 1 103348754 103348754 C G COL11A1 Splice_Site p.X1657_splice 0.10 TCGA-CQ-A4C7-01 1 10725221 10725221 C T CASZ1 Missense_Mutation p.D142N 0.22 deleterious_low_confidence(0.02) benign(0.104) TCGA-CQ-A4C7-01 1 205042245 205042245 G A CNTN2 Missense_Mutation p.G965D 0.08 tolerated(0.07) benign(0.017) TCGA-CQ-A4C7-01 1 220170347 220170347 A C EPRS Missense_Mutation p.L840R 0.11 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4C7-01 1 245850065 245850065 G A KIF26B Silent p.P1260P 0.14 TCGA-CQ-A4C7-01 1 26369045 26369045 A C SLC30A2 Missense_Mutation p.F243V 0.08 deleterious(0.01) possibly_damaging(0.69) TCGA-CQ-A4C7-01 1 38455601 38455601 C A SF3A3 Nonsense_Mutation p.E13* 0.05 TCGA-CQ-A4C7-01 1 82372826 82372826 G T LPHN2 Silent p.R66R 0.06 TCGA-CQ-A4C7-01 1 93301776 93301776 C T RPL5 Silent p.I118I 0.06 TCGA-CQ-A4C7-01 20 42908023 42908023 C G GDAP1L1 3'UTR 0.12 TCGA-CQ-A4C7-01 21 45680690 45680690 G A DNMT3L Nonsense_Mutation p.R47* 0.14 TCGA-CQ-A4C7-01 22 44692710 44692710 G A KIAA1644 Silent p.Y41Y 0.06 TCGA-CQ-A4C7-01 2 150061851 150061851 T C LYPD6B Silent p.V54V 0.12 TCGA-CQ-A4C7-01 2 15372601 15372601 G T NBAS Missense_Mutation p.P2061T 0.18 deleterious(0.01) possibly_damaging(0.548) TCGA-CQ-A4C7-01 2 175614731 175614731 G T CHRNA1 Silent p.V340V 0.37 TCGA-CQ-A4C7-01 2 190584435 190584435 C G ANKAR Missense_Mutation p.L788V 0.11 tolerated(0.08) benign(0.044) TCGA-CQ-A4C7-01 2 202588135 202588135 T C ALS2 Missense_Mutation p.D1181G 0.17 deleterious(0) possibly_damaging(0.775) TCGA-CQ-A4C7-01 2 64778891 64778893 GAA - AFTPH In_Frame_Del p.E95del 0.15 TCGA-CQ-A4C7-01 3 108549583 108549583 C T TRAT1 Missense_Mutation p.S25L 0.10 deleterious(0.01) benign(0.323) TCGA-CQ-A4C7-01 3 122634290 122634290 G A SEMA5B Missense_Mutation p.S716F 0.34 deleterious(0) probably_damaging(1) TCGA-CQ-A4C7-01 3 183824517 183824517 C A HTR3E 3'Flank 0.16 TCGA-CQ-A4C7-01 3 183975424 183975424 C G ECE2 Silent p.P120P 0.07 TCGA-CQ-A4C7-01 4 13600870 13600870 G A BOD1L1 Missense_Mutation p.L2552F 0.17 benign(0.226) TCGA-CQ-A4C7-01 4 40098847 40098847 G A N4BP2 Intron 0.23 TCGA-CQ-A4C7-01 4 40122006 40122006 A G N4BP2 Missense_Mutation p.R759G 0.24 tolerated(0.1) possibly_damaging(0.804) TCGA-CQ-A4C7-01 4 4322518 4322518 G T ZBTB49 Missense_Mutation p.E591D 0.14 tolerated(0.39) benign(0.001) TCGA-CQ-A4C7-01 4 71508562 71508562 G A ENAM Silent p.L473L 0.38 TCGA-CQ-A4C7-01 5 110409293 110409293 A G TSLP Missense_Mutation p.K101E 0.09 tolerated(0.65) benign(0.058) TCGA-CQ-A4C7-01 5 14401070 14401070 A G TRIO Splice_Site p.X1539_splice 0.29 TCGA-CQ-A4C7-01 6 161020532 161020532 G A LPA Missense_Mutation p.A1096V 0.07 deleterious(0.02) probably_damaging(0.987) TCGA-CQ-A4C7-01 6 24784759 24784759 C T GMNN Nonsense_Mutation p.Q149* 0.33 TCGA-CQ-A4C7-01 6 41708282 41708282 C G PGC Missense_Mutation p.Q238H 0.05 tolerated(0.1) possibly_damaging(0.69) TCGA-CQ-A4C7-01 6 56495095 56495095 T G DST Missense_Mutation p.E873A 0.24 possibly_damaging(0.82) TCGA-CQ-A4C7-01 6 70935688 70935688 C T COL9A1 Missense_Mutation p.R843H 0.18 probably_damaging(0.966) TCGA-CQ-A4C7-01 7 100284282 100284282 G A GIGYF1 Silent p.S228S 0.29 TCGA-CQ-A4C7-01 7 121612604 121612604 A G PTPRZ1 Missense_Mutation p.N105S 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-CQ-A4C7-01 8 133829644 133829644 G C PHF20L1 Missense_Mutation p.S478T 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-A4C7-01 8 67089181 67089181 C T CRH Missense_Mutation p.E178K 0.18 deleterious(0.05) possibly_damaging(0.688) TCGA-CQ-A4C7-01 8 87544758 87544758 G T CPNE3 Missense_Mutation p.D137Y 0.05 deleterious(0) probably_damaging(0.946) TCGA-CQ-A4C7-01 9 107266698 107266698 A G OR13F1 Missense_Mutation p.D52G 0.10 deleterious(0) possibly_damaging(0.459) TCGA-CQ-A4C7-01 9 139910307 139910307 C G ABCA2 Missense_Mutation p.E1112Q 0.06 tolerated(0.06) probably_damaging(0.976) TCGA-CQ-A4C7-01 X 19587305 19587305 C T SH3KBP1 Missense_Mutation p.G434S 0.13 tolerated(0.49) benign(0.012) TCGA-CQ-A4C7-01 X 54359869 54359869 T C WNK3 Missense_Mutation p.R80G 0.16 deleterious(0.01) benign(0.01) TCGA-CQ-A4C7-01 X 91134233 91134233 G A PCDH11X Silent p.V998V 0.17 TCGA-CQ-A4C9-01 10 121662313 121662313 T G SEC23IP Silent p.V233V 0.27 TCGA-CQ-A4C9-01 10 27702585 27702585 C T PTCHD3 Missense_Mutation p.A199T 0.26 tolerated(0.4) benign(0.071) TCGA-CQ-A4C9-01 10 73591605 73591605 C T PSAP Missense_Mutation p.E83K 0.12 deleterious(0) probably_damaging(0.938) TCGA-CQ-A4C9-01 10 96802818 96802818 C A CYP2C8 Missense_Mutation p.E326D 0.12 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4C9-01 11 104821749 104821749 G A CASP4 Missense_Mutation p.P150L 0.09 deleterious(0.02) benign(0.104) TCGA-CQ-A4C9-01 11 118376894 118376894 C T KMT2A Silent p.I3429I 0.07 TCGA-CQ-A4C9-01 11 1491582 1491582 G C MOB2 Silent p.L209L 0.11 TCGA-CQ-A4C9-01 11 17482118 17482118 C T ABCC8 Missense_Mutation p.D310N 0.14 deleterious(0.01) possibly_damaging(0.88) TCGA-CQ-A4C9-01 12 122729266 122729266 C T VPS33A Silent p.Q273Q 0.16 TCGA-CQ-A4C9-01 12 20885955 20885955 C G SLCO1C1 Silent p.V433V 0.10 TCGA-CQ-A4C9-01 12 31242413 31242413 G A DDX11 Missense_Mutation p.R290K 0.09 tolerated(0.81) benign(0.08) TCGA-CQ-A4C9-01 13 114079468 114079468 C G ADPRHL1 Missense_Mutation p.E225Q 0.07 tolerated(0.17) probably_damaging(0.995) TCGA-CQ-A4C9-01 13 22246293 22246293 C G FGF9 Missense_Mutation p.T81S 0.17 tolerated(0.38) benign(0.001) TCGA-CQ-A4C9-01 13 29001349 29001349 T G FLT1 Missense_Mutation p.Q461H 0.05 tolerated(0.05) possibly_damaging(0.866) TCGA-CQ-A4C9-01 13 29933536 29933536 G A MTUS2 Missense_Mutation p.A1025T 0.22 tolerated(0.13) benign(0.002) TCGA-CQ-A4C9-01 13 77619532 77619532 C G MYCBP2 Missense_Mutation p.R4635T 0.14 probably_damaging(0.942) TCGA-CQ-A4C9-01 14 23567243 23567243 G A C14orf119 Missense_Mutation p.V126M 0.10 deleterious(0.03) benign(0.282) TCGA-CQ-A4C9-01 14 57949845 57949845 G A C14orf105 Nonsense_Mutation p.R111* 0.22 TCGA-CQ-A4C9-01 14 75078171 75078171 C T LTBP2 Silent p.P159P 0.32 TCGA-CQ-A4C9-01 14 80158520 80158520 C A NRXN3 Intron 0.13 TCGA-CQ-A4C9-01 14 90651171 90651171 G C KCNK13 Missense_Mutation p.D351H 0.20 deleterious(0) probably_damaging(0.96) TCGA-CQ-A4C9-01 14 94417390 94417390 C T ASB2 Missense_Mutation p.A279T 0.16 deleterious(0.02) probably_damaging(0.993) TCGA-CQ-A4C9-01 15 20488851 20488851 G T CHEK2P2 RNA 0.13 TCGA-CQ-A4C9-01 15 43891412 43891412 C T CKMT1B Missense_Mutation p.R399C 0.07 tolerated(0.05) possibly_damaging(0.762) TCGA-CQ-A4C9-01 15 75113085 75113085 C G LMAN1L Nonsense_Mutation p.S295* 0.12 TCGA-CQ-A4C9-01 16 19460863 19460863 G A TMC5 Splice_Site p.X320_splice 0.34 TCGA-CQ-A4C9-01 16 30975976 30975976 T A SETD1A Missense_Mutation p.Y305N 0.15 possibly_damaging(0.686) TCGA-CQ-A4C9-01 16 5145467 5145467 C T FAM86A Missense_Mutation p.D49N 0.11 tolerated(0.08) benign(0.006) TCGA-CQ-A4C9-01 16 84623742 84623742 G A COTL1 Missense_Mutation p.T96M 0.25 deleterious(0) possibly_damaging(0.812) TCGA-CQ-A4C9-01 17 40330439 40330439 C G KCNH4 Missense_Mutation p.V123L 0.15 deleterious(0.01) benign(0.162) TCGA-CQ-A4C9-01 17 41958921 41958921 G A MPP2 Nonsense_Mutation p.R240* 0.10 TCGA-CQ-A4C9-01 17 47656174 47656174 C T NXPH3 Missense_Mutation p.P91S 0.20 tolerated(0.9) benign(0.006) TCGA-CQ-A4C9-01 17 58123500 58123500 C G HEATR6 Missense_Mutation p.E954Q 0.08 tolerated(0.09) benign(0.297) TCGA-CQ-A4C9-01 17 66423284 66423284 G A WIPI1 Missense_Mutation p.T395M 0.07 deleterious(0.03) benign(0.161) TCGA-CQ-A4C9-01 17 73489130 73489130 G T KIAA0195 Missense_Mutation p.R678L 0.15 tolerated(0.33) probably_damaging(0.997) TCGA-CQ-A4C9-01 17 7578394 7578394 T A TP53 Missense_Mutation p.H179L 0.41 tolerated(0.12) probably_damaging(1) TCGA-CQ-A4C9-01 17 79514274 79514274 C T C17orf70 Missense_Mutation p.G612R 0.09 tolerated(0.1) benign(0.035) TCGA-CQ-A4C9-01 18 20516826 20516826 G A RBBP8 Silent p.S4S 0.24 TCGA-CQ-A4C9-01 18 31599400 31599400 G A NOL4 Missense_Mutation p.A313V 0.38 tolerated(0.09) benign(0.231) TCGA-CQ-A4C9-01 19 20807419 20807419 C G ZNF626 Missense_Mutation p.E422Q 0.16 deleterious(0.05) probably_damaging(0.993) TCGA-CQ-A4C9-01 19 30935708 30935708 G A ZNF536 Silent p.V413V 0.14 TCGA-CQ-A4C9-01 19 36041995 36041995 G A ATP4A Silent p.I968I 0.56 TCGA-CQ-A4C9-01 19 40580445 40580445 T A ZNF780A Missense_Mutation p.H636L 0.16 deleterious(0) probably_damaging(0.917) TCGA-CQ-A4C9-01 19 54545598 54545598 G C VSTM1 Missense_Mutation p.I140M 0.12 tolerated(0.09) benign(0.187) TCGA-CQ-A4C9-01 19 6850734 6850734 G A VAV1 Missense_Mutation p.R728Q 0.14 deleterious(0.02) probably_damaging(0.988) TCGA-CQ-A4C9-01 1 12785713 12785713 C T AADACL3 Missense_Mutation p.P268L 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-CQ-A4C9-01 1 152733428 152733428 G C KPRP Missense_Mutation p.C455S 0.12 tolerated(0.12) benign(0.011) TCGA-CQ-A4C9-01 1 174188383 174188383 C T RABGAP1L Nonsense_Mutation p.Q30* 0.11 TCGA-CQ-A4C9-01 1 211840550 211840550 G A NEK2 Missense_Mutation p.R337C 0.07 deleterious(0) probably_damaging(0.991) TCGA-CQ-A4C9-01 1 248458047 248458047 C T OR2T12 Missense_Mutation p.M278I 0.19 tolerated(1) benign(0) TCGA-CQ-A4C9-01 1 31769513 31769513 C A SNRNP40 Missense_Mutation p.G29V 0.12 tolerated(0.36) benign(0.046) TCGA-CQ-A4C9-01 1 35453023 35453023 C T ZMYM6 Missense_Mutation p.M1220I 0.17 tolerated_low_confidence(0.1) benign(0.001) TCGA-CQ-A4C9-01 1 85422147 85422147 C T MCOLN2 Missense_Mutation p.E178K 0.14 tolerated(0.07) benign(0.066) TCGA-CQ-A4C9-01 20 33596524 33596524 C A TRPC4AP Missense_Mutation p.G513V 0.08 deleterious(0) probably_damaging(1) TCGA-CQ-A4C9-01 20 3845297 3845297 G A MAVS Silent p.A340A 0.07 TCGA-CQ-A4C9-01 20 8722154 8722154 G A PLCB1 Silent p.L819L 0.07 TCGA-CQ-A4C9-01 21 34727622 34727622 T C IFNAR1 Missense_Mutation p.Y481H 0.23 tolerated(0.31) benign(0.035) TCGA-CQ-A4C9-01 22 26423388 26423388 C A MYO18B Missense_Mutation p.S2483Y 0.12 deleterious(0) possibly_damaging(0.532) TCGA-CQ-A4C9-01 2 128066276 128066276 G A MAP3K2 Missense_Mutation p.R507W 0.06 deleterious(0) probably_damaging(0.961) TCGA-CQ-A4C9-01 2 152659794 152659794 C G ARL5A Missense_Mutation p.R179T 0.12 deleterious(0) probably_damaging(0.95) TCGA-CQ-A4C9-01 2 15319196 15319196 C T NBAS Silent p.L2252L 0.11 TCGA-CQ-A4C9-01 2 185803908 185803908 A C ZNF804A 3'UTR 0.39 TCGA-CQ-A4C9-01 2 200193463 200193463 G A SATB2 Silent p.V448V 0.12 TCGA-CQ-A4C9-01 2 218999925 218999925 T A CXCR2 Missense_Mutation p.I134N 0.07 deleterious(0) possibly_damaging(0.876) TCGA-CQ-A4C9-01 2 230725191 230725191 G C TRIP12 Intron 0.18 TCGA-CQ-A4C9-01 2 40656621 40656621 C A SLC8A1 Missense_Mutation p.R267L 0.44 deleterious(0) probably_damaging(0.97) TCGA-CQ-A4C9-01 2 47389661 47389661 C G CALM2 Missense_Mutation p.D59H 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.725) TCGA-CQ-A4C9-01 2 70503972 70503972 G A PCYOX1 Silent p.S322S 0.08 TCGA-CQ-A4C9-01 2 98392478 98392478 T C TMEM131 Missense_Mutation p.K1383R 0.12 tolerated_low_confidence(0.09) probably_damaging(0.98) TCGA-CQ-A4C9-01 3 113176157 113176157 C T SPICE1 Missense_Mutation p.E495K 0.04 tolerated(0.07) possibly_damaging(0.547) TCGA-CQ-A4C9-01 3 125652459 125652459 C T ALG1L Missense_Mutation p.R20H 0.23 tolerated(0.27) benign(0) TCGA-CQ-A4C9-01 3 127396078 127396078 C T ABTB1 Silent p.L237L 0.18 TCGA-CQ-A4C9-01 3 130694231 130694231 G A ATP2C1 Missense_Mutation p.C524Y 0.14 deleterious(0) probably_damaging(0.994) TCGA-CQ-A4C9-01 3 131219333 131219333 G A MRPL3 Silent p.L104L 0.05 TCGA-CQ-A4C9-01 3 134086462 134086462 C T AMOTL2 Silent p.S306S 0.21 TCGA-CQ-A4C9-01 3 13421096 13421096 G C NUP210 Missense_Mutation p.L315V 0.09 deleterious(0.01) benign(0.03) TCGA-CQ-A4C9-01 3 150285973 150285973 G A EIF2A Silent p.V235V 0.20 TCGA-CQ-A4C9-01 3 154898213 154898213 T C MME Missense_Mutation p.Y740H 0.24 tolerated(0.5) probably_damaging(0.947) TCGA-CQ-A4C9-01 3 155203374 155203374 G A PLCH1 Silent p.S923S 0.06 TCGA-CQ-A4C9-01 3 167240192 167240192 T C WDR49 Silent p.E543E 0.16 TCGA-CQ-A4C9-01 3 170805171 170805171 C T TNIK Missense_Mutation p.R949H 0.08 tolerated(0.2) benign(0.021) TCGA-CQ-A4C9-01 3 57107805 57107805 G C SPATA12 Missense_Mutation p.R28T 0.19 tolerated_low_confidence(0.26) benign(0.005) TCGA-CQ-A4C9-01 3 58508313 58508313 T C ACOX2 Silent p.S514S 0.16 TCGA-CQ-A4C9-01 4 176622894 176622894 C A GPM6A Missense_Mutation p.C21F 0.08 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4C9-01 4 8239292 8239292 C T SH3TC1 Silent p.L1216L 0.28 TCGA-CQ-A4C9-01 5 154393920 154393920 T C KIF4B Silent p.P167P 0.17 TCGA-CQ-A4C9-01 5 180424310 180424310 C T BTNL3 Silent p.A165A 0.17 TCGA-CQ-A4C9-01 5 35910084 35910084 G A CAPSL Missense_Mutation p.R137C 0.13 deleterious(0) probably_damaging(0.941) TCGA-CQ-A4C9-01 5 64956687 64956687 A - TRAPPC13 Frame_Shift_Del p.R288Gfs*30 0.31 TCGA-CQ-A4C9-01 5 79026749 79026749 T C CMYA5 Silent p.L721L 0.14 TCGA-CQ-A4C9-01 6 118475631 118475631 T A SLC35F1 Missense_Mutation p.L66Q 0.07 deleterious(0) probably_damaging(0.994) TCGA-CQ-A4C9-01 6 129828664 129828664 A C LAMA2 Missense_Mutation p.N2912H 0.12 deleterious(0.02) possibly_damaging(0.9) TCGA-CQ-A4C9-01 6 26045748 26045748 A T HIST1H3C Missense_Mutation p.K37M 0.30 deleterious_low_confidence(0.01) benign(0.164) TCGA-CQ-A4C9-01 6 39507857 39507857 G A KIF6 Nonsense_Mutation p.R523* 0.15 TCGA-CQ-A4C9-01 6 6002627 6002627 C T NRN1 Silent p.P53P 0.08 TCGA-CQ-A4C9-01 7 100549486 100549486 T C MUC3A Silent p.L23L 0.27 TCGA-CQ-A4C9-01 7 103155722 103155722 C T RELN Missense_Mutation p.A2677T 0.45 tolerated_low_confidence(0.47) probably_damaging(0.984) TCGA-CQ-A4C9-01 7 107642158 107642158 G A LAMB1 Missense_Mutation p.R20C 0.12 tolerated(0.18) benign(0) TCGA-CQ-A4C9-01 7 116963002 116963002 C A WNT2 Silent p.L14L 0.16 TCGA-CQ-A4C9-01 7 123302858 123302858 A T LMOD2 Missense_Mutation p.K406N 0.14 tolerated(0.08) benign(0.33) TCGA-CQ-A4C9-01 7 124404324 124404324 C T GPR37 Missense_Mutation p.R236H 0.15 deleterious(0.05) benign(0.005) TCGA-CQ-A4C9-01 7 126882748 126882748 C A GRM8 Splice_Site p.X170_splice 0.12 TCGA-CQ-A4C9-01 7 150746472 150746472 G A ASIC3 Missense_Mutation p.R167H 0.13 deleterious(0.03) probably_damaging(0.993) TCGA-CQ-A4C9-01 7 38393543 38393543 G C TRGV4 Missense_Mutation p.L43V 0.08 tolerated(0.22) benign(0.017) TCGA-CQ-A4C9-01 8 106814845 106814845 G A ZFPM2 Silent p.T845T 0.43 TCGA-CQ-A4C9-01 8 31030518 31030518 C T WRN Missense_Mutation p.S1400F 0.16 deleterious(0) benign(0.006) TCGA-CQ-A4C9-01 8 37707308 37707308 A G BRF2 5'UTR 0.72 TCGA-CQ-A4C9-01 8 55370808 55370808 G T SOX17 Missense_Mutation p.S37I 0.17 deleterious(0.04) probably_damaging(0.944) TCGA-CQ-A4C9-01 8 59410811 59410811 A T CYP7A1 Missense_Mutation p.F100I 0.08 deleterious(0.03) possibly_damaging(0.512) TCGA-CQ-A4C9-01 8 61778373 61778373 G A CHD7 Missense_Mutation p.E2959K 0.15 probably_damaging(0.955) TCGA-CQ-A4C9-01 8 6357521 6357521 G A ANGPT2 3'UTR 0.30 TCGA-CQ-A4C9-01 8 88365940 88365940 A - CNBD1 Frame_Shift_Del p.V411Ffs*36 0.12 TCGA-CQ-A4C9-01 9 14150263 14150263 C T NFIB Silent p.T229T 0.51 TCGA-CQ-A4C9-01 9 23765013 23765013 C T ELAVL2 Intron 0.09 TCGA-CQ-A4C9-01 9 84530548 84530548 G A SPATA31D5P RNA 0.11 TCGA-CQ-A4C9-01 X 117700104 117700104 G A DOCK11 Missense_Mutation p.S277N 0.24 tolerated(0.18) benign(0.102) TCGA-CQ-A4C9-01 X 16871871 16871871 T A RBBP7 Missense_Mutation p.D275V 0.19 deleterious(0) probably_damaging(0.93) TCGA-CQ-A4C9-01 X 18192182 18192182 G T BEND2 Missense_Mutation p.T650N 0.13 tolerated(0.14) benign(0.147) TCGA-CQ-A4CB-01 10 49446166 49446166 G A FRMPD2 Silent p.R263R 0.25 TCGA-CQ-A4CB-01 10 5958338 5958338 A G FBXO18 Silent p.E620E 0.06 TCGA-CQ-A4CB-01 11 122928524 122928535 CCTCCTGGCATG - HSPA8 In_Frame_Del p.M621_G624del 0.15 TCGA-CQ-A4CB-01 11 18327881 18327881 T C HPS5 Missense_Mutation p.K209E 0.14 deleterious(0.01) possibly_damaging(0.836) TCGA-CQ-A4CB-01 11 32953741 32953741 C T QSER1 Nonsense_Mutation p.R184* 0.10 TCGA-CQ-A4CB-01 11 40135934 40135934 C G LRRC4C Missense_Mutation p.E637Q 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CQ-A4CB-01 11 61580768 61580768 G A FADS1 Missense_Mutation p.L145F 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-A4CB-01 11 82644572 82644572 C T C11orf82 Missense_Mutation p.S731L 0.21 tolerated(0.05) probably_damaging(0.952) TCGA-CQ-A4CB-01 12 31250823 31250823 C T DDX11 Silent p.S589S 0.11 TCGA-CQ-A4CB-01 12 50344598 50344598 C T AQP2 5'UTR 0.19 TCGA-CQ-A4CB-01 13 108860946 108860946 C G LIG4 Missense_Mutation p.E891Q 0.32 tolerated(0.07) benign(0.081) TCGA-CQ-A4CB-01 13 38225478 38225478 T A TRPC4 Missense_Mutation p.Y668F 0.31 deleterious(0) probably_damaging(0.989) TCGA-CQ-A4CB-01 13 53624329 53624329 G C OLFM4 Missense_Mutation p.R319P 0.24 tolerated(0.08) possibly_damaging(0.886) TCGA-CQ-A4CB-01 13 98658459 98658459 G A IPO5 Missense_Mutation p.E543K 0.11 tolerated(0.25) probably_damaging(0.971) TCGA-CQ-A4CB-01 14 21424015 21424015 C T RNASE2 Missense_Mutation p.P29S 0.13 deleterious(0.04) probably_damaging(1) TCGA-CQ-A4CB-01 14 24901213 24901213 G A KHNYN Missense_Mutation p.R249K 0.14 tolerated(0.43) benign(0.003) TCGA-CQ-A4CB-01 14 30100021 30100021 C G PRKD1 Missense_Mutation p.E533D 0.14 deleterious(0) probably_damaging(0.99) TCGA-CQ-A4CB-01 14 55510556 55510556 C T SOCS4 Missense_Mutation p.T266M 0.22 deleterious(0.03) possibly_damaging(0.8) TCGA-CQ-A4CB-01 15 41859694 41859694 C T TYRO3 Missense_Mutation p.S307F 0.18 deleterious(0) probably_damaging(1) TCGA-CQ-A4CB-01 15 48755289 48755289 G A FBN1 Silent p.I1738I 0.21 TCGA-CQ-A4CB-01 15 53049699 53049699 A T ONECUT1 3'UTR 0.22 TCGA-CQ-A4CB-01 15 80889367 80889367 C G ARNT2 3'UTR 0.33 TCGA-CQ-A4CB-01 16 16162046 16162046 A G ABCC1 Missense_Mutation p.I571V 0.16 tolerated(1) benign(0.005) TCGA-CQ-A4CB-01 16 24372741 24372741 T A CACNG3 Missense_Mutation p.S169T 0.20 tolerated(0.34) probably_damaging(0.91) TCGA-CQ-A4CB-01 16 64984785 64984785 G A CDH11 Silent p.C593C 0.16 TCGA-CQ-A4CB-01 16 69970263 69970263 C - WWP2 Frame_Shift_Del p.D675Efs*8 0.11 TCGA-CQ-A4CB-01 16 75018899 75018899 C T WDR59 Missense_Mutation p.S6N 0.27 tolerated(0.38) benign(0.248) TCGA-CQ-A4CB-01 17 10297616 10297616 C T MYH8 Missense_Mutation p.E1706K 0.18 deleterious(0.02) probably_damaging(1) TCGA-CQ-A4CB-01 17 17896185 17896185 A G LRRC48 Missense_Mutation p.D184G 0.08 tolerated(0.08) benign(0.003) TCGA-CQ-A4CB-01 17 27908805 27908805 C A GIT1 Nonsense_Mutation p.E225* 0.17 TCGA-CQ-A4CB-01 17 29119578 29119578 C T CRLF3 Missense_Mutation p.G280D 0.15 tolerated(0.08) probably_damaging(1) TCGA-CQ-A4CB-01 17 73818688 73818688 A T UNK Missense_Mutation p.E656D 0.21 tolerated(0.25) benign(0.009) TCGA-CQ-A4CB-01 17 74208539 74208539 A G RNF157 Missense_Mutation p.I38T 0.20 deleterious(0.02) benign(0.11) TCGA-CQ-A4CB-01 17 7578196 7578196 A C TP53 Missense_Mutation p.V218G 0.23 deleterious(0) probably_damaging(1) TCGA-CQ-A4CB-01 18 77193673 77193673 C T NFATC1 Missense_Mutation p.H428Y 0.22 deleterious(0) probably_damaging(0.993) TCGA-CQ-A4CB-01 19 10226178 10226178 G C EIF3G Silent p.L308L 0.17 TCGA-CQ-A4CB-01 19 17373777 17373777 C T USHBP1 Missense_Mutation p.G76S 0.21 tolerated(0.42) benign(0.004) TCGA-CQ-A4CB-01 19 23927938 23927938 C A ZNF681 Missense_Mutation p.Q138H 0.15 tolerated(0.17) possibly_damaging(0.781) TCGA-CQ-A4CB-01 19 2852908 2852908 A G ZNF555 Missense_Mutation p.K282R 0.12 tolerated(0.08) probably_damaging(0.985) TCGA-CQ-A4CB-01 19 36332691 36332691 T C NPHS1 Missense_Mutation p.D914G 0.10 deleterious(0) probably_damaging(1) TCGA-CQ-A4CB-01 19 3964800 3964800 C T DAPK3 Silent p.E84E 0.16 TCGA-CQ-A4CB-01 19 45175995 45175995 G A CEACAM19 Silent p.Q61Q 0.09 TCGA-CQ-A4CB-01 1 166833074 166833074 C G TADA1 Missense_Mutation p.R106P 0.16 deleterious(0.01) benign(0.111) TCGA-CQ-A4CB-01 1 177001737 177001737 G A ASTN1 Silent p.D240D 0.22 TCGA-CQ-A4CB-01 1 204198208 204198208 C T PLEKHA6 Missense_Mutation p.E870K 0.16 deleterious(0.01) possibly_damaging(0.489) TCGA-CQ-A4CB-01 1 216061956 216061956 G T USH2A Missense_Mutation p.H2679N 0.19 benign(0.02) TCGA-CQ-A4CB-01 1 216498645 216498645 A G USH2A Splice_Site p.X381_splice 0.21 TCGA-CQ-A4CB-01 1 230391092 230391092 T C GALNT2 Splice_Site p.X379_splice 0.10 TCGA-CQ-A4CB-01 1 24463651 24463651 T A IL22RA1 Missense_Mutation p.M109L 0.14 tolerated(0.18) benign(0.063) TCGA-CQ-A4CB-01 1 247921201 247921201 C T OR1C1 Missense_Mutation p.A170T 0.22 tolerated(0.09) possibly_damaging(0.495) TCGA-CQ-A4CB-01 1 27106260 27106260 C T ARID1A Silent p.D1957D 0.15 TCGA-CQ-A4CB-01 1 27657240 27657240 G A TMEM222 Missense_Mutation p.G75D 0.19 deleterious(0) probably_damaging(1) TCGA-CQ-A4CB-01 1 86196211 86196211 G A COL24A1 3'UTR 0.14 TCGA-CQ-A4CB-01 20 13763786 13763786 T A ESF1 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.813) TCGA-CQ-A4CB-01 20 1459088 1459088 T G SIRPB2 Missense_Mutation p.N206H 0.07 deleterious(0.03) probably_damaging(0.998) TCGA-CQ-A4CB-01 20 31692670 31692670 G A BPIFB4 Missense_Mutation p.A579T 0.11 tolerated(0.08) benign(0.005) TCGA-CQ-A4CB-01 20 44682334 44682334 G A SLC12A5 Missense_Mutation p.E912K 0.18 deleterious(0.04) benign(0.323) TCGA-CQ-A4CB-01 20 62871146 62871146 G A MYT1 Missense_Mutation p.E1043K 0.18 possibly_damaging(0.884) TCGA-CQ-A4CB-01 21 38538034 38538034 A G TTC3 Missense_Mutation p.K1173R 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-CQ-A4CB-01 22 18389389 18389389 C T MICAL3 Missense_Mutation p.A64T 0.26 probably_damaging(0.999) TCGA-CQ-A4CB-01 22 19423198 19423198 G C MRPL40 Missense_Mutation p.E112Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4CB-01 22 46931868 46931868 G T CELSR1 Missense_Mutation p.F400L 0.10 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4CB-01 22 50636403 50636403 G A TRABD Missense_Mutation p.E275K 0.21 tolerated(0.09) benign(0.174) TCGA-CQ-A4CB-01 2 133402871 133402871 C A GPR39 Silent p.R352R 0.25 TCGA-CQ-A4CB-01 2 166848805 166848805 G C SCN1A Silent p.L1660L 0.20 TCGA-CQ-A4CB-01 2 170371416 170371417 AA - KLHL41 Frame_Shift_Del p.N441Cfs*5 0.11 TCGA-CQ-A4CB-01 2 224824372 224824372 G A MRPL44 Missense_Mutation p.E101K 0.16 deleterious(0) possibly_damaging(0.882) TCGA-CQ-A4CB-01 2 234343483 234343483 G A DGKD Silent p.P174P 0.16 TCGA-CQ-A4CB-01 2 242174939 242174939 C T HDLBP Missense_Mutation p.G992E 0.20 deleterious(0) probably_damaging(0.976) TCGA-CQ-A4CB-01 2 27883959 27883959 G A SUPT7L Missense_Mutation p.S104L 0.15 tolerated(0.15) benign(0.002) TCGA-CQ-A4CB-01 2 32379522 32379522 C T SPAST Missense_Mutation p.A603V 0.06 tolerated(0.11) benign(0.121) TCGA-CQ-A4CB-01 3 123946894 123946894 A C KALRN Missense_Mutation p.K42T 0.16 deleterious(0) probably_damaging(0.987) TCGA-CQ-A4CB-01 3 126224668 126224668 G A UROC1 Missense_Mutation p.A230V 0.11 deleterious(0.04) benign(0.152) TCGA-CQ-A4CB-01 3 164757710 164757710 C T SI Missense_Mutation p.G737S 0.09 deleterious(0) probably_damaging(0.989) TCGA-CQ-A4CB-01 3 196089375 196089375 C T UBXN7 Missense_Mutation p.E340K 0.12 tolerated(0.54) benign(0.039) TCGA-CQ-A4CB-01 3 36587780 36587780 G T STAC Nonstop_Mutation p.*403Lext*46 0.18 TCGA-CQ-A4CB-01 3 48510907 48510907 G A SHISA5 Missense_Mutation p.P166S 0.05 deleterious(0.03) probably_damaging(0.96) TCGA-CQ-A4CB-01 4 101439122 101439122 C T EMCN 5'UTR 0.20 TCGA-CQ-A4CB-01 4 145040931 145040931 G A GYPA Missense_Mutation p.T47M 0.13 deleterious(0.04) possibly_damaging(0.785) TCGA-CQ-A4CB-01 4 156632228 156632228 G A GUCY1A3 Missense_Mutation p.G304D 0.10 deleterious(0) probably_damaging(1) TCGA-CQ-A4CB-01 4 26422206 26422206 G A RBPJ Missense_Mutation p.D132N 0.11 deleterious(0.02) probably_damaging(1) TCGA-CQ-A4CB-01 4 5576499 5576499 A C EVC2 Missense_Mutation p.C1091W 0.21 deleterious(0) benign(0.002) TCGA-CQ-A4CB-01 4 5838521 5838521 G A CRMP1 Missense_Mutation p.R475W 0.26 deleterious(0) probably_damaging(1) TCGA-CQ-A4CB-01 4 66197640 66197640 A T EPHA5 Intron 0.27 TCGA-CQ-A4CB-01 4 72316105 72316105 G T SLC4A4 Splice_Site p.X352_splice 0.11 TCGA-CQ-A4CB-01 5 13792168 13792168 G A DNAH5 Nonsense_Mutation p.R2795* 0.08 TCGA-CQ-A4CB-01 5 139006435 139006435 G A UBE2D2 3'UTR 0.22 TCGA-CQ-A4CB-01 5 140744164 140744164 G A PCDHGA5 Silent p.R89R 0.18 TCGA-CQ-A4CB-01 5 176334156 176334156 C T UIMC1 Missense_Mutation p.R624Q 0.12 deleterious(0.04) possibly_damaging(0.576) TCGA-CQ-A4CB-01 5 68599697 68599697 T C CCDC125 Missense_Mutation p.K226R 0.30 tolerated(0.28) probably_damaging(0.981) TCGA-CQ-A4CB-01 6 12750005 12750005 C G PHACTR1 Missense_Mutation p.S78C 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.843) TCGA-CQ-A4CB-01 6 28963925 28963925 T C ZNF311 Missense_Mutation p.K285R 0.12 tolerated(0.4) benign(0.022) TCGA-CQ-A4CB-01 6 41766423 41766445 TTTCCGTGTCCCCCACCCCACAG - USP49 Frame_Shift_Del p.C632Gfs*34 0.16 TCGA-CQ-A4CB-01 6 42666177 42666177 A G PRPH2 Silent p.S299S 0.26 TCGA-CQ-A4CB-01 6 80197214 80197214 C G LCA5 Missense_Mutation p.G534A 0.17 tolerated(0.33) benign(0.056) TCGA-CQ-A4CB-01 6 83847134 83847134 G A DOPEY1 Missense_Mutation p.E1125K 0.22 tolerated_low_confidence(0.21) benign(0.212) TCGA-CQ-A4CB-01 6 86246536 86246537 - A SNX14 Frame_Shift_Ins p.G528Wfs*4 0.21 TCGA-CQ-A4CB-01 7 100348329 100348329 C G ZAN Missense_Mutation p.A444G 0.24 probably_damaging(0.987) TCGA-CQ-A4CB-01 7 100684366 100684366 A G MUC17 Silent p.P3223P 0.16 TCGA-CQ-A4CB-01 7 107543983 107543983 G A DLD Missense_Mutation p.G110R 0.14 deleterious(0) probably_damaging(1) TCGA-CQ-A4CB-01 7 121738887 121738887 C T AASS Silent p.R480R 0.14 TCGA-CQ-A4CB-01 7 143771514 143771514 G A OR2A25 Missense_Mutation p.V68I 0.19 tolerated(0.52) benign(0.024) TCGA-CQ-A4CB-01 7 150933597 150933597 G T CHPF2 Missense_Mutation p.G311V 0.29 tolerated(0.08) benign(0.036) TCGA-CQ-A4CB-01 7 38393464 38393464 T A TRGV4 Missense_Mutation p.D69V 0.17 tolerated(0.13) benign(0.051) TCGA-CQ-A4CB-01 8 133858144 133858144 G C PHF20L1 Missense_Mutation p.Q1010H 0.17 deleterious(0.04) possibly_damaging(0.606) TCGA-CQ-A4CB-01 8 139151265 139151265 G T FAM135B Missense_Mutation p.R1289S 0.19 deleterious(0) probably_damaging(0.995) TCGA-CQ-A4CB-01 8 144991442 144991442 T A PLEC Missense_Mutation p.I4320F 0.18 possibly_damaging(0.885) TCGA-CQ-A4CB-01 8 145640734 145640734 C T SLC39A4 Missense_Mutation p.V182I 0.53 deleterious(0.04) possibly_damaging(0.813) TCGA-CQ-A4CB-01 8 82626245 82626245 G A ZFAND1 Nonsense_Mutation p.R130* 0.19 TCGA-CQ-A4CB-01 9 79853232 79853232 G T VPS13A Missense_Mutation p.E610D 0.12 tolerated(1) benign(0.001) TCGA-CQ-A4CB-01 9 85597629 85597629 T C RASEF Missense_Mutation p.K729R 0.18 tolerated(0.21) benign(0.015) TCGA-CQ-A4CB-01 X 153001569 153001569 C T ABCD1 Missense_Mutation p.A362V 0.34 tolerated(0.31) benign(0.006) TCGA-CQ-A4CB-01 X 53619411 53619411 C G HUWE1 Missense_Mutation p.E1307Q 0.19 benign(0.413) TCGA-CQ-A4CB-01 X 96136680 96136680 G C DIAPH2 Missense_Mutation p.E184Q 0.43 deleterious(0) unknown(0) TCGA-CQ-A4CD-01 10 104161068 104161068 G A NFKB2 Missense_Mutation p.D735N 0.30 tolerated(0.07) benign(0.048) TCGA-CQ-A4CD-01 10 106937877 106937877 C T SORCS3 Missense_Mutation p.P652L 0.20 deleterious(0.03) benign(0.104) TCGA-CQ-A4CD-01 10 115971687 115971687 G A TDRD1 Missense_Mutation p.G575R 0.28 deleterious(0) probably_damaging(0.991) TCGA-CQ-A4CD-01 10 118357632 118357632 G C PNLIPRP1 Missense_Mutation p.K256N 0.23 tolerated(0.24) benign(0.005) TCGA-CQ-A4CD-01 10 119015147 119015147 C T SLC18A2 Missense_Mutation p.P292S 0.19 deleterious(0) probably_damaging(0.967) TCGA-CQ-A4CD-01 10 17199512 17199512 G T TRDMT1 Nonsense_Mutation p.S272* 0.20 TCGA-CQ-A4CD-01 10 26851329 26851329 G C APBB1IP Missense_Mutation p.E482Q 0.24 deleterious(0) benign(0.159) TCGA-CQ-A4CD-01 10 27538842 27538842 G T RP11-85G18.6 Intron 0.32 TCGA-CQ-A4CD-01 10 27538843 27538843 G T RP11-85G18.6 Intron 0.32 TCGA-CQ-A4CD-01 10 74631162 74631162 G C MCU Missense_Mutation p.E229Q 0.21 tolerated(0.06) possibly_damaging(0.593) TCGA-CQ-A4CD-01 10 75435369 75435369 G A AGAP5 Missense_Mutation p.S350L 0.35 tolerated(0.19) benign(0.004) TCGA-CQ-A4CD-01 10 81850793 81850793 G C TMEM254 3'UTR 0.32 TCGA-CQ-A4CD-01 10 98823366 98823366 G T SLIT1 Missense_Mutation p.H213Q 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-CQ-A4CD-01 11 102647507 102647507 C T MMP10 Missense_Mutation p.G208D 0.04 tolerated(0.09) probably_damaging(1) TCGA-CQ-A4CD-01 11 102988494 102988494 C T DYNC2H1 Silent p.L301L 0.05 TCGA-CQ-A4CD-01 11 1266806 1266806 C T MUC5B Missense_Mutation p.S2899F 0.17 unknown(0) TCGA-CQ-A4CD-01 11 32417947 32417947 G A WT1 Nonsense_Mutation p.R369* 0.32 TCGA-CQ-A4CD-01 11 55406478 55406478 T C OR4P4 Silent p.S215S 0.24 TCGA-CQ-A4CD-01 11 64594814 64594814 G A CDC42BPG Missense_Mutation p.R1403C 0.15 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4CD-01 11 64851407 64851407 G C CDCA5 Missense_Mutation p.S15C 0.22 deleterious(0.02) possibly_damaging(0.868) TCGA-CQ-A4CD-01 11 78380277 78380277 A T TENM4 Missense_Mutation p.S2371R 0.10 deleterious(0) possibly_damaging(0.899) TCGA-CQ-A4CD-01 12 108912624 108912624 G A FICD Missense_Mutation p.R250H 0.26 deleterious(0) probably_damaging(0.997) TCGA-CQ-A4CD-01 12 11183603 11183603 G A TAS2R31 Missense_Mutation p.A111V 0.07 tolerated(0.05) possibly_damaging(0.521) TCGA-CQ-A4CD-01 12 120941680 120941680 G C COQ5 Missense_Mutation p.F297L 0.27 tolerated(0.07) possibly_damaging(0.533) TCGA-CQ-A4CD-01 12 122097169 122097169 G A MORN3 Silent p.L77L 0.33 TCGA-CQ-A4CD-01 12 124069243 124069243 C G TMED2 Silent p.G20G 0.17 TCGA-CQ-A4CD-01 12 32134255 32134255 A G KIAA1551 Silent p.S122S 0.26 TCGA-CQ-A4CD-01 12 48741052 48741052 G C ZNF641 Missense_Mutation p.L101V 0.11 deleterious(0.04) probably_damaging(0.978) TCGA-CQ-A4CD-01 12 49094798 49094798 A G CCNT1 Missense_Mutation p.L144S 0.18 deleterious(0) probably_damaging(0.996) TCGA-CQ-A4CD-01 12 51072582 51072582 G A DIP2B Nonsense_Mutation p.W346* 0.35 TCGA-CQ-A4CD-01 12 52797498 52797498 C T KRT82 Missense_Mutation p.G203S 0.21 tolerated(0.05) benign(0.016) TCGA-CQ-A4CD-01 12 53447799 53447802 GTAA - TENC1 Splice_Site p.X127_splice 0.24 TCGA-CQ-A4CD-01 12 53854798 53854798 G A PCBP2 Splice_Site p.X126_splice 0.28 TCGA-CQ-A4CD-01 12 58145293 58145294 - G CDK4 Frame_Shift_Ins p.N70Qfs*15 0.22 TCGA-CQ-A4CD-01 12 6438571 6438571 G C TNFRSF1A Silent p.L425L 0.55 TCGA-CQ-A4CD-01 12 6579803 6579803 C G VAMP1 5'UTR 0.17 TCGA-CQ-A4CD-01 12 7172550 7172550 G T C1S Missense_Mutation p.D222Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4CD-01 12 72008698 72008698 G T ZFC3H1 Nonsense_Mutation p.S1759* 0.28 TCGA-CQ-A4CD-01 13 114288294 114288294 G C TFDP1 Missense_Mutation p.E188D 0.32 deleterious(0.02) benign(0.1) TCGA-CQ-A4CD-01 13 25744032 25744032 C T AMER2 Missense_Mutation p.E576K 0.29 tolerated(0.06) possibly_damaging(0.69) TCGA-CQ-A4CD-01 13 43180865 43180865 G C TNFSF11 Silent p.L255L 0.36 TCGA-CQ-A4CD-01 13 67800669 67800669 C G PCDH9 Missense_Mutation p.R635T 0.23 deleterious(0) probably_damaging(1) TCGA-CQ-A4CD-01 14 102492935 102492935 G C DYNC1H1 Missense_Mutation p.E2888Q 0.29 benign(0.003) TCGA-CQ-A4CD-01 14 38679420 38679420 G A SSTR1 Missense_Mutation p.V276M 0.23 deleterious(0.05) probably_damaging(0.992) TCGA-CQ-A4CD-01 14 39650601 39650601 G C PNN Missense_Mutation p.R563T 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-CQ-A4CD-01 14 54868293 54868293 T A CDKN3 Silent p.L48L 0.28 TCGA-CQ-A4CD-01 14 54868294 54868294 C A CDKN3 Missense_Mutation p.P49T 0.29 deleterious(0) probably_damaging(1) TCGA-CQ-A4CD-01 15 23932409 23932409 C G NDN 5'UTR 0.50 TCGA-CQ-A4CD-01 15 28474970 28474970 A G HERC2 Silent p.S1611S 0.28 TCGA-CQ-A4CD-01 15 40862066 40862066 A G RPUSD2 Missense_Mutation p.Y177C 0.36 deleterious(0.04) probably_damaging(0.979) TCGA-CQ-A4CD-01 15 41246009 41246009 G A CHAC1 Silent p.K118K 0.33 TCGA-CQ-A4CD-01 15 44093763 44093763 T A HYPK Missense_Mutation p.L97Q 0.08 deleterious(0) probably_damaging(0.984) TCGA-CQ-A4CD-01 15 64067335 64067335 C A HERC1 Missense_Mutation p.R163L 0.23 possibly_damaging(0.903) TCGA-CQ-A4CD-01 15 99442718 99442718 C T IGF1R Missense_Mutation p.S372L 0.32 tolerated(0.09) possibly_damaging(0.522) TCGA-CQ-A4CD-01 16 1828538 1828538 C T SPSB3 Missense_Mutation p.E68K 0.26 deleterious(0.05) possibly_damaging(0.754) TCGA-CQ-A4CD-01 16 19745024 19745024 C A IQCK Missense_Mutation p.A84E 0.23 tolerated(0.23) benign(0.184) TCGA-CQ-A4CD-01 16 23768600 23768600 G A CHP2 Missense_Mutation p.D165N 0.26 deleterious(0) probably_damaging(0.986) TCGA-CQ-A4CD-01 16 2815863 2815863 G C SRRM2 Missense_Mutation p.R1778S 0.28 unknown(0) TCGA-CQ-A4CD-01 16 28884863 28884863 G C SH2B1 Missense_Mutation p.E665Q 0.17 tolerated_low_confidence(0.1) benign(0.403) TCGA-CQ-A4CD-01 16 67691433 67691433 C G RLTPR 3'UTR 0.24 TCGA-CQ-A4CD-01 16 70693995 70693995 C T IL34 Silent p.L212L 0.30 TCGA-CQ-A4CD-01 16 75200665 75200665 C G ZFP1 Intron 0.15 TCGA-CQ-A4CD-01 16 90016039 90016039 G A DEF8 Missense_Mutation p.E56K 0.31 tolerated_low_confidence(0.28) benign(0) TCGA-CQ-A4CD-01 16 9210584 9210584 C T C16orf72 Missense_Mutation p.H215Y 0.19 tolerated(0.24) probably_damaging(0.994) TCGA-CQ-A4CD-01 17 15983977 15983977 G A NCOR1 Missense_Mutation p.P1081L 0.23 probably_damaging(0.999) TCGA-CQ-A4CD-01 17 16705588 16705588 G A CCDC144A 3'UTR 0.24 TCGA-CQ-A4CD-01 17 26091112 26091112 G A NOS2 Silent p.T829T 0.13 TCGA-CQ-A4CD-01 17 37922071 37922071 C G IKZF3 Missense_Mutation p.R501T 0.17 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4CD-01 17 45994113 45994113 G A SP2 Missense_Mutation p.G226R 0.23 deleterious(0) possibly_damaging(0.759) TCGA-CQ-A4CD-01 17 55083691 55083691 C A SCPEP1 3'UTR 0.27 TCGA-CQ-A4CD-01 17 62758128 62758146 GTTTGCTACACATCTGAAC - hsa-mir-6080 RNA 0.09 TCGA-CQ-A4CD-01 17 74154560 74154560 C T RNF157 Missense_Mutation p.V443M 0.27 tolerated_low_confidence(0.09) benign(0.149) TCGA-CQ-A4CD-01 17 7572959 7572962 TGAG - TP53 Frame_Shift_Del p.L383Cfs*38 0.15 TCGA-CQ-A4CD-01 17 7578524 7578524 G C TP53 Missense_Mutation p.Q136E 0.20 deleterious(0) probably_damaging(0.997) TCGA-CQ-A4CD-01 17 78319633 78319633 G C RNF213 Missense_Mutation p.E2500Q 0.26 probably_damaging(0.998) TCGA-CQ-A4CD-01 17 79098605 79098605 C T AATK Missense_Mutation p.R295H 0.30 deleterious(0) probably_damaging(0.987) TCGA-CQ-A4CD-01 17 7915473 7915473 C G GUCY2D Silent p.L587L 0.23 TCGA-CQ-A4CD-01 18 28672097 28672097 C G DSC2 Missense_Mutation p.K107N 0.13 deleterious(0.01) possibly_damaging(0.872) TCGA-CQ-A4CD-01 19 10570275 10570275 G A PDE4A Missense_Mutation p.R402Q 0.27 deleterious(0) probably_damaging(0.949) TCGA-CQ-A4CD-01 19 1218423 1218423 C T STK11 Nonsense_Mutation p.Q100* 0.27 TCGA-CQ-A4CD-01 19 15905407 15905407 T C OR10H5 Silent p.P183P 0.09 TCGA-CQ-A4CD-01 19 16977298 16977298 C G SIN3B Missense_Mutation p.F611L 0.19 deleterious(0) probably_damaging(0.983) TCGA-CQ-A4CD-01 19 17405231 17405231 G A ABHD8 Missense_Mutation p.R339W 0.27 deleterious(0) probably_damaging(0.995) TCGA-CQ-A4CD-01 19 18963799 18963799 C T UPF1 Nonsense_Mutation p.Q326* 0.24 TCGA-CQ-A4CD-01 19 39003117 39003117 G A RYR1 Missense_Mutation p.V3156I 0.34 benign(0.001) TCGA-CQ-A4CD-01 19 43233993 43233993 G C PSG3 Missense_Mutation p.Q309E 0.23 tolerated(1) benign(0.004) TCGA-CQ-A4CD-01 19 47278812 47278812 G A SLC1A5 Silent p.P527P 0.20 TCGA-CQ-A4CD-01 19 48339631 48339631 C G CRX Missense_Mutation p.L78V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4CD-01 19 4950635 4950635 C G UHRF1 RNA 0.38 TCGA-CQ-A4CD-01 19 54297236 54297236 G A NLRP12 3'UTR 0.18 TCGA-CQ-A4CD-01 19 54691100 54691100 C A MBOAT7 Silent p.L92L 0.38 TCGA-CQ-A4CD-01 19 54691101 54691101 A G MBOAT7 Missense_Mutation p.L92P 0.38 deleterious(0.01) possibly_damaging(0.876) TCGA-CQ-A4CD-01 19 58571457 58571457 G A ZNF135 Intron 0.28 TCGA-CQ-A4CD-01 19 9011002 9011002 G C MUC16 Missense_Mutation p.F12972L 0.16 probably_damaging(0.956) TCGA-CQ-A4CD-01 1 100634004 100634004 C A LRRC39 Missense_Mutation p.K23N 0.23 deleterious(0) benign(0.197) TCGA-CQ-A4CD-01 1 102296381 102296381 A - OLFM3 Frame_Shift_Del p.Q74Rfs*10 0.19 TCGA-CQ-A4CD-01 1 11073773 11073773 G A TARDBP Intron 0.50 TCGA-CQ-A4CD-01 1 1309521 1309521 G A AURKAIP1 Silent p.V119V 0.32 TCGA-CQ-A4CD-01 1 1334480 1334480 G A CCNL2 Silent p.L69L 0.24 TCGA-CQ-A4CD-01 1 148251844 148251844 G C NBPF20 3'UTR 0.08 TCGA-CQ-A4CD-01 1 149783657 149783657 G A HIST2H2BF Silent p.I74I 0.18 TCGA-CQ-A4CD-01 1 150722538 150722538 C A CTSS Missense_Mutation p.G246V 0.41 deleterious(0) probably_damaging(0.996) TCGA-CQ-A4CD-01 1 173526596 173526596 T A SLC9C2 Missense_Mutation p.E366D 0.07 tolerated(0.42) benign(0.083) TCGA-CQ-A4CD-01 1 179620113 179620113 G C TDRD5 Missense_Mutation p.D638H 0.19 deleterious(0) probably_damaging(1) TCGA-CQ-A4CD-01 1 207200887 207200887 G T C1orf116 Silent p.V19V 0.08 TCGA-CQ-A4CD-01 1 214791936 214791936 G C CENPF Missense_Mutation p.R127T 0.43 probably_damaging(0.996) TCGA-CQ-A4CD-01 1 235922444 235922444 G A LYST Nonsense_Mutation p.Q2237* 0.42 TCGA-CQ-A4CD-01 1 40717103 40717103 T C TMCO2 Missense_Mutation p.I129T 0.18 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-CQ-A4CD-01 1 51864782 51864782 G C EPS15 Missense_Mutation p.F658L 0.21 deleterious(0) possibly_damaging(0.885) TCGA-CQ-A4CD-01 1 52841200 52841200 G A ORC1 Silent p.F735F 0.22 TCGA-CQ-A4CD-01 1 63018486 63018486 G A DOCK7 Nonsense_Mutation p.R895* 0.26 TCGA-CQ-A4CD-01 1 68954653 68954653 C G DEPDC1 Missense_Mutation p.R179T 0.23 deleterious(0) possibly_damaging(0.48) TCGA-CQ-A4CD-01 20 30365422 30365422 G T TPX2 Missense_Mutation p.R288L 0.33 deleterious(0) possibly_damaging(0.758) TCGA-CQ-A4CD-01 20 62378317 62378317 C T ZBTB46 Missense_Mutation p.G579E 0.44 tolerated_low_confidence(0.08) probably_damaging(0.972) TCGA-CQ-A4CD-01 20 62737341 62737341 C T NPBWR2 Missense_Mutation p.V282M 0.35 deleterious(0) possibly_damaging(0.835) TCGA-CQ-A4CD-01 21 15538724 15538724 C G LIPI Missense_Mutation p.G252A 0.30 deleterious(0.01) probably_damaging(1) TCGA-CQ-A4CD-01 22 25024311 25024311 C T GGT1 Nonsense_Mutation p.Q507* 0.17 TCGA-CQ-A4CD-01 22 40742709 40742709 C G ADSL Silent p.A49A 0.33 TCGA-CQ-A4CD-01 2 128396899 128396899 G A LIMS2 Missense_Mutation p.S352F 0.23 tolerated(0.05) possibly_damaging(0.628) TCGA-CQ-A4CD-01 2 135890465 135890465 T C RAB3GAP1 Missense_Mutation p.F413L 0.27 deleterious(0.03) benign(0.021) TCGA-CQ-A4CD-01 2 152670738 152670738 A G ARL5A Missense_Mutation p.I67T 0.22 deleterious(0.03) benign(0.106) TCGA-CQ-A4CD-01 2 203686198 203686198 G C ICA1L Nonsense_Mutation p.S81* 0.33 TCGA-CQ-A4CD-01 2 216272015 216272015 C T FN1 Missense_Mutation p.E850K 0.25 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4CD-01 2 219520928 219520928 G A ZNF142 Silent p.I75I 0.15 TCGA-CQ-A4CD-01 2 219520929 219520929 A T ZNF142 Missense_Mutation p.I75N 0.16 deleterious(0.02) possibly_damaging(0.731) TCGA-CQ-A4CD-01 2 220078891 220078891 G A ABCB6 Silent p.A468A 0.17 TCGA-CQ-A4CD-01 2 227895306 227895318 CAGGTGCTCCTGA - COL4A4 Splice_Site p.X1273_splice 0.36 TCGA-CQ-A4CD-01 2 227963502 227963502 T C COL4A4 Missense_Mutation p.D371G 0.18 probably_damaging(0.945) TCGA-CQ-A4CD-01 2 233710512 233710512 C T GIGYF2 Nonsense_Mutation p.Q1147* 0.32 TCGA-CQ-A4CD-01 2 234628224 234628224 C G UGT1A4 Missense_Mutation p.S253C 0.23 deleterious(0) probably_damaging(1) TCGA-CQ-A4CD-01 2 64780062 64780062 A G AFTPH Missense_Mutation p.N485S 0.31 tolerated(0.66) benign(0.047) TCGA-CQ-A4CD-01 3 121646627 121646627 G A SLC15A2 Missense_Mutation p.G383S 0.32 deleterious(0) probably_damaging(1) TCGA-CQ-A4CD-01 3 134089642 134089642 G C AMOTL2 Missense_Mutation p.Q212E 0.26 tolerated(1) probably_damaging(0.985) TCGA-CQ-A4CD-01 3 135871452 135871452 C G MSL2 Missense_Mutation p.E91Q 0.24 tolerated(0.37) benign(0.34) TCGA-CQ-A4CD-01 3 154055808 154055808 C G GPR149 Missense_Mutation p.D626H 0.20 deleterious(0) probably_damaging(0.936) TCGA-CQ-A4CD-01 3 172631518 172631518 G T SPATA16 Missense_Mutation p.A507E 0.25 tolerated(0.13) possibly_damaging(0.765) TCGA-CQ-A4CD-01 3 49316263 49316263 G C USP4 Missense_Mutation p.S906C 0.40 deleterious(0.01) benign(0.054) TCGA-CQ-A4CD-01 3 49690575 49690575 G A BSN Missense_Mutation p.E1196K 0.52 unknown(0) TCGA-CQ-A4CD-01 3 49697990 49697990 G A BSN Silent p.E2904E 0.33 TCGA-CQ-A4CD-01 4 123109097 123109097 C G KIAA1109 Missense_Mutation p.I225M 0.25 benign(0.03) TCGA-CQ-A4CD-01 4 15437537 15437537 G A C1QTNF7 Missense_Mutation p.R64H 0.32 tolerated(0.09) benign(0.059) TCGA-CQ-A4CD-01 4 17493925 17493925 G C QDPR Missense_Mutation p.Q159E 0.35 deleterious(0.01) probably_damaging(0.956) TCGA-CQ-A4CD-01 4 187628651 187628652 - A FAT1 Frame_Shift_Ins p.L777Ffs*5 0.22 TCGA-CQ-A4CD-01 4 75065546 75065546 G T MTHFD2L Missense_Mutation p.A163S 0.28 tolerated(0.9) benign(0.212) TCGA-CQ-A4CD-01 5 137497527 137497527 A C BRD8 Missense_Mutation p.V736G 0.17 deleterious(0) probably_damaging(1) TCGA-CQ-A4CD-01 5 145529194 145529194 C G LARS Missense_Mutation p.M498I 0.17 deleterious(0.02) benign(0.368) TCGA-CQ-A4CD-01 5 19571872 19571872 G A CDH18 Missense_Mutation p.R357C 0.19 deleterious(0) probably_damaging(1) TCGA-CQ-A4CD-01 5 26903762 26903762 A T CDH9 Missense_Mutation p.I328N 0.35 deleterious(0) possibly_damaging(0.557) TCGA-CQ-A4CD-01 6 102074444 102074444 G A GRIK2 Missense_Mutation p.R158H 0.21 tolerated(0.42) benign(0.002) TCGA-CQ-A4CD-01 6 112021406 112021406 C T FYN Missense_Mutation p.D255N 0.27 deleterious(0.04) benign(0.073) TCGA-CQ-A4CD-01 6 117681103 117681103 G C ROS1 Missense_Mutation p.Q1173E 0.19 tolerated(0.43) benign(0.08) TCGA-CQ-A4CD-01 6 128385918 128385918 G A PTPRK Missense_Mutation p.R727C 0.18 deleterious(0) possibly_damaging(0.862) TCGA-CQ-A4CD-01 6 143816918 143816918 C A FUCA2 Nonsense_Mutation p.E444* 0.27 TCGA-CQ-A4CD-01 6 148869524 148869524 C G SASH1 Missense_Mutation p.P1192A 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CQ-A4CD-01 6 43096998 43096998 C T PTK7 Silent p.I129I 0.19 TCGA-CQ-A4CD-01 6 5771587 5771587 G C FARS2 Missense_Mutation p.Q427H 0.29 deleterious(0.03) benign(0.294) TCGA-CQ-A4CD-01 6 6225053 6225053 C A F13A1 Missense_Mutation p.W280L 0.27 deleterious(0) probably_damaging(1) TCGA-CQ-A4CD-01 6 89808522 89808522 C G SRSF12 Missense_Mutation p.K187N 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-CQ-A4CD-01 7 141427040 141427040 G C WEE2 Intron 0.16 TCGA-CQ-A4CD-01 7 31617900 31617900 C A CCDC129 Missense_Mutation p.S367Y 0.14 tolerated(0.46) probably_damaging(0.983) TCGA-CQ-A4CD-01 7 38725414 38725414 G A FAM183B Silent p.D64D 0.33 TCGA-CQ-A4CD-01 7 42949829 42949829 C G C7orf25 Missense_Mutation p.R282T 0.33 tolerated(0.33) benign(0.045) TCGA-CQ-A4CD-01 7 99799430 99799430 C G STAG3 Missense_Mutation p.L748V 0.18 deleterious(0.01) benign(0.055) TCGA-CQ-A4CD-01 8 100127959 100127959 C G VPS13B Missense_Mutation p.S265C 0.17 deleterious(0) possibly_damaging(0.7) TCGA-CQ-A4CD-01 8 101075915 101075915 G A RGS22 Missense_Mutation p.H361Y 0.21 tolerated(1) benign(0.001) TCGA-CQ-A4CD-01 8 104337688 104337688 G C FZD6 Missense_Mutation p.D452H 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CQ-A4CD-01 8 110457400 110457400 G A PKHD1L1 Missense_Mutation p.E1768K 0.16 tolerated(0.52) possibly_damaging(0.867) TCGA-CQ-A4CD-01 8 125988597 125988597 A T ZNF572 Silent p.T29T 0.14 TCGA-CQ-A4CD-01 8 139788219 139788219 C T COL22A1 Missense_Mutation p.R598Q 0.20 unknown(0) TCGA-CQ-A4CD-01 8 143921918 143921918 G A GML Missense_Mutation p.R22H 0.41 tolerated(0.12) benign(0.001) TCGA-CQ-A4CD-01 8 144332588 144332588 G A ZFP41 Missense_Mutation p.R192H 0.26 tolerated(0.25) benign(0.002) TCGA-CQ-A4CD-01 8 52370181 52370181 C T PXDNL Missense_Mutation p.D287N 0.23 tolerated(0.12) benign(0.443) TCGA-CQ-A4CD-01 8 53569561 53569561 G A RB1CC1 Missense_Mutation p.S943F 0.22 deleterious_low_confidence(0.04) benign(0.109) TCGA-CQ-A4CD-01 8 70476248 70476248 T G SULF1 Missense_Mutation p.L13R 0.36 deleterious_low_confidence(0) benign(0.01) TCGA-CQ-A4CD-01 8 86352120 86352120 G C CA3 Missense_Mutation p.D72H 0.18 deleterious(0.02) probably_damaging(1) TCGA-CQ-A4CD-01 9 100857233 100857233 C T TRIM14 Missense_Mutation p.E206K 0.46 deleterious(0.01) probably_damaging(0.983) TCGA-CQ-A4CD-01 9 130536747 130536747 C G SH2D3C Splice_Site p.X13_splice 0.15 TCGA-CQ-A4CD-01 9 130854238 130854238 G C SLC25A25 Intron 0.14 TCGA-CQ-A4CD-01 9 13121779 13121779 C G MPDZ Missense_Mutation p.K1730N 0.18 deleterious(0) probably_damaging(0.94) TCGA-CQ-A4CD-01 9 21971153 21971153 C A CDKN2A Nonsense_Mutation p.E69* 0.45 TCGA-CQ-A4CD-01 9 35042305 35042305 C G C9orf131 Silent p.L18L 0.10 TCGA-CQ-A4CD-01 9 35092632 35092632 C G PIGO Missense_Mutation p.E418Q 0.24 tolerated(0.13) benign(0.323) TCGA-CQ-A4CD-01 9 35398240 35398240 G A UNC13B Silent p.L1180L 0.28 TCGA-CQ-A4CD-01 9 71491598 71491598 G T PIP5K1B Missense_Mutation p.G69V 0.27 deleterious(0.02) probably_damaging(1) TCGA-CQ-A4CD-01 9 72913017 72913017 C G SMC5 Missense_Mutation p.Q397E 0.17 tolerated(0.12) possibly_damaging(0.828) TCGA-CQ-A4CD-01 9 94830314 94830314 G C SPTLC1 Nonsense_Mutation p.S165* 0.14 TCGA-CQ-A4CD-01 9 95375457 95375457 G A CENPP 3'UTR 0.30 TCGA-CQ-A4CD-01 9 96278301 96278301 C A FAM120A Missense_Mutation p.Q390K 0.18 tolerated(0.8) benign(0.007) TCGA-CQ-A4CD-01 X 10102535 10102535 C T WWC3 Missense_Mutation p.R888W 0.48 deleterious(0.01) benign(0.121) TCGA-CQ-A4CD-01 X 107829872 107829872 A G COL4A5 Missense_Mutation p.T354A 0.45 unknown(0) TCGA-CQ-A4CD-01 X 110492172 110492172 C T CAPN6 Silent p.E424E 0.40 TCGA-CQ-A4CD-01 X 125298868 125298868 C G DCAF12L2 Missense_Mutation p.R347P 0.49 deleterious(0.03) possibly_damaging(0.818) TCGA-CQ-A4CD-01 X 8434505 8434505 G T VCX3B 3'UTR 0.38 TCGA-CQ-A4CE-01 10 107022210 107022210 G A SORCS3 Missense_Mutation p.E1189K 0.06 tolerated(0.39) benign(0.013) TCGA-CQ-A4CE-01 10 75331243 75331243 C T USP54 Missense_Mutation p.R59H 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CQ-A4CE-01 11 65360664 65360664 G A KCNK7 Missense_Mutation p.L246F 0.39 deleterious(0) probably_damaging(1) TCGA-CQ-A4CE-01 11 8132166 8132166 G T RIC3 3'UTR 0.32 TCGA-CQ-A4CE-01 11 92615993 92615993 G T FAT3 Missense_Mutation p.C4124F 0.30 probably_damaging(0.954) TCGA-CQ-A4CE-01 11 94113654 94113654 G A GPR83 Silent p.Y311Y 0.20 TCGA-CQ-A4CE-01 11 99690434 99690434 C A CNTN5 Missense_Mutation p.A72E 0.09 tolerated_low_confidence(0.38) benign(0.025) TCGA-CQ-A4CE-01 12 11091149 11091149 C T TAS2R14 Missense_Mutation p.G220R 0.07 tolerated(1) benign(0.003) TCGA-CQ-A4CE-01 12 2778131 2778131 C T CACNA1C Silent p.S1600S 0.06 TCGA-CQ-A4CE-01 12 64664467 64664467 G C C12orf56 Missense_Mutation p.Q378E 0.25 deleterious(0.02) benign(0.015) TCGA-CQ-A4CE-01 13 110813613 110813613 C T COL4A1 Nonsense_Mutation p.W1522* 0.09 TCGA-CQ-A4CE-01 13 113979878 113979878 C T GRTP1 Intron 0.30 TCGA-CQ-A4CE-01 13 37678603 37678603 C T CSNK1A1L Missense_Mutation p.R264H 0.08 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-CQ-A4CE-01 14 39545272 39545272 C T SEC23A Missense_Mutation p.R285H 0.10 deleterious(0.01) benign(0.408) TCGA-CQ-A4CE-01 14 57749707 57749707 C T AP5M1 Nonsense_Mutation p.R382* 0.10 TCGA-CQ-A4CE-01 14 71267534 71267534 G A MAP3K9 Missense_Mutation p.R224C 0.19 deleterious(0) possibly_damaging(0.857) TCGA-CQ-A4CE-01 16 1388940 1388940 C T BAIAP3 Missense_Mutation p.R92C 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CQ-A4CE-01 16 20043132 20043132 C T GPR139 Silent p.P329P 0.05 TCGA-CQ-A4CE-01 16 2579489 2579489 C T AMDHD2 Silent p.L415L 0.20 TCGA-CQ-A4CE-01 16 4935253 4935253 G A PPL Missense_Mutation p.R1135C 0.21 tolerated(0.05) benign(0.035) TCGA-CQ-A4CE-01 16 50342585 50342585 G T ADCY7 Missense_Mutation p.C648F 0.20 tolerated(0.53) benign(0.002) TCGA-CQ-A4CE-01 16 51172806 51172806 C T SALL1 Silent p.P1109P 0.21 TCGA-CQ-A4CE-01 16 58608604 58608604 C T CNOT1 Missense_Mutation p.G630R 0.20 deleterious(0.02) possibly_damaging(0.89) TCGA-CQ-A4CE-01 16 67860095 67860095 T G TSNAXIP1 Silent p.A341A 0.16 TCGA-CQ-A4CE-01 16 89294664 89294664 C T ZNF778 Silent p.S628S 0.08 TCGA-CQ-A4CE-01 17 20130899 20130899 G A SPECC1 Silent p.K679K 0.09 TCGA-CQ-A4CE-01 17 37453402 37453402 C G FBXL20 Missense_Mutation p.G126R 0.09 tolerated(0.14) possibly_damaging(0.6) TCGA-CQ-A4CE-01 17 42158136 42158136 C T HDAC5 Missense_Mutation p.E909K 0.12 deleterious(0.01) benign(0.348) TCGA-CQ-A4CE-01 17 46629806 46629806 C T HOXB3 Missense_Mutation p.A11T 0.22 tolerated(0.29) benign(0.002) TCGA-CQ-A4CE-01 17 4836833 4836833 G C GP1BA Missense_Mutation p.V312L 0.09 tolerated(0.09) benign(0.417) TCGA-CQ-A4CE-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.36 TCGA-CQ-A4CE-01 18 47813190 47813190 C T CXXC1 Silent p.G14G 0.05 TCGA-CQ-A4CE-01 18 65180278 65180278 G A DSEL Missense_Mutation p.A533V 0.16 deleterious(0.02) benign(0.165) TCGA-CQ-A4CE-01 19 2477210 2477210 C T GADD45B Silent p.G110G 0.16 TCGA-CQ-A4CE-01 19 44377555 44377555 A G ZNF404 Missense_Mutation p.Y271H 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-CQ-A4CE-01 19 50188182 50188182 G A PRMT1 Nonsense_Mutation p.W216* 0.18 TCGA-CQ-A4CE-01 19 53994426 53994426 C G ZNF813 Missense_Mutation p.L314V 0.05 deleterious(0.01) possibly_damaging(0.821) TCGA-CQ-A4CE-01 19 58596344 58596344 G A ZSCAN18 Missense_Mutation p.A470V 0.13 tolerated(0.72) benign(0.015) TCGA-CQ-A4CE-01 19 6677918 6677918 A G C3 Missense_Mutation p.M1656T 0.30 deleterious(0) probably_damaging(0.921) TCGA-CQ-A4CE-01 1 167095194 167095194 G T DUSP27 Nonsense_Mutation p.E276* 0.15 TCGA-CQ-A4CE-01 1 168013891 168013891 G A DCAF6 Missense_Mutation p.E638K 0.19 tolerated_low_confidence(0.14) benign(0.008) TCGA-CQ-A4CE-01 1 18809387 18809387 G A KLHDC7A Missense_Mutation p.V638I 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-CQ-A4CE-01 1 202888952 202888953 - TGTG KLHL12 Frame_Shift_Ins p.E94Hfs*32 0.08 TCGA-CQ-A4CE-01 1 2938391 2938391 C A ACTRT2 Silent p.P47P 0.06 TCGA-CQ-A4CE-01 1 52896752 52896752 G A ZCCHC11 Silent p.H1548H 0.11 TCGA-CQ-A4CE-01 1 934936 934936 G A HES4 Silent p.L114L 0.11 TCGA-CQ-A4CE-01 20 1559260 1559260 G A RP4-576H24.4 Missense_Mutation p.R52C 0.21 deleterious(0.04) possibly_damaging(0.849) TCGA-CQ-A4CE-01 20 17341192 17341192 G T PCSK2 Missense_Mutation p.A138S 0.29 tolerated(0.62) probably_damaging(0.996) TCGA-CQ-A4CE-01 20 31685464 31685464 G T BPIFB4 Missense_Mutation p.R480S 0.05 tolerated(0.33) benign(0.102) TCGA-CQ-A4CE-01 20 36952427 36952427 G T BPI Missense_Mutation p.K308N 0.23 tolerated(0.69) benign(0.003) TCGA-CQ-A4CE-01 20 61468572 61468572 G A COL9A3 Missense_Mutation p.G581R 0.11 deleterious(0) probably_damaging(1) TCGA-CQ-A4CE-01 21 45389028 45389028 G T AGPAT3 Silent p.L126L 0.12 TCGA-CQ-A4CE-01 2 11725892 11725892 C T GREB1 Silent p.S340S 0.09 TCGA-CQ-A4CE-01 2 168101531 168101531 A T XIRP2 Missense_Mutation p.D1210V 0.29 probably_damaging(0.98) TCGA-CQ-A4CE-01 2 179469534 179469534 G T TTN Silent p.G18094G 0.14 TCGA-CQ-A4CE-01 2 203807531 203807531 C T CARF Silent p.I49I 0.22 TCGA-CQ-A4CE-01 2 44065004 44065004 G A ABCG5 Silent p.S78S 0.17 TCGA-CQ-A4CE-01 2 79365148 79365148 C A REG1P RNA 0.26 TCGA-CQ-A4CE-01 3 111312457 111312457 C G ZBED2 Missense_Mutation p.E198Q 0.14 deleterious(0.02) probably_damaging(0.991) TCGA-CQ-A4CE-01 3 123456283 123456283 C T MYLK Silent p.T232T 0.15 TCGA-CQ-A4CE-01 3 2967357 2967357 C G CNTN4 Missense_Mutation p.L418V 0.12 tolerated(0.43) benign(0.241) TCGA-CQ-A4CE-01 3 36875084 36875084 C T TRANK1 Missense_Mutation p.R1953H 0.11 deleterious(0) probably_damaging(0.991) TCGA-CQ-A4CE-01 3 48456266 48456266 T C PLXNB1 Missense_Mutation p.N1384S 0.21 tolerated(0.26) benign(0.014) TCGA-CQ-A4CE-01 3 51981894 51981894 G A PARP3 Missense_Mutation p.R479Q 0.11 tolerated(0.22) benign(0.027) TCGA-CQ-A4CE-01 3 9102000 9102000 G A SRGAP3 Missense_Mutation p.A239V 0.14 deleterious(0.01) possibly_damaging(0.661) TCGA-CQ-A4CE-01 4 124323326 124323326 G T SPRY1 Missense_Mutation p.A194S 0.07 tolerated(0.4) benign(0.371) TCGA-CQ-A4CE-01 4 153247175 153247175 T C FBXW7 Missense_Mutation p.R543G 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-CQ-A4CE-01 4 187524392 187524393 - TGTGT FAT1 Frame_Shift_Ins p.S3763Nfs*7 0.33 TCGA-CQ-A4CE-01 4 4322503 4322503 C A ZBTB49 Nonsense_Mutation p.C586* 0.10 TCGA-CQ-A4CE-01 4 88580599 88580599 C A DMP1 Nonsense_Mutation p.S51* 0.33 TCGA-CQ-A4CE-01 5 140167364 140167364 C T PCDHA1 Missense_Mutation p.R497W 0.11 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-CQ-A4CE-01 5 140242417 140242417 C T AC005609.1 Missense_Mutation p.A187T 0.38 possibly_damaging(0.695) TCGA-CQ-A4CE-01 5 140262142 140262142 G A PCDHA13 Missense_Mutation p.G97R 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.765) TCGA-CQ-A4CE-01 5 55192224 55192224 G A IL31RA Silent p.A273A 0.11 TCGA-CQ-A4CE-01 5 80381703 80381703 C T RASGRF2 Missense_Mutation p.A415V 0.22 deleterious(0) probably_damaging(0.986) TCGA-CQ-A4CE-01 6 135263564 135263564 C T ALDH8A1 Missense_Mutation p.R142Q 0.06 deleterious(0.01) possibly_damaging(0.663) TCGA-CQ-A4CE-01 6 3140675 3140675 C T BPHL Silent p.H240H 0.25 TCGA-CQ-A4CE-01 6 38749052 38749053 - C DNAH8 Frame_Shift_Ins p.L507Sfs*24 0.28 TCGA-CQ-A4CE-01 6 79657436 79657437 - A PHIP Frame_Shift_Ins p.L1370Ffs*7 0.13 TCGA-CQ-A4CE-01 7 141618705 141618705 A T OR9A4 Missense_Mutation p.E10D 0.18 deleterious(0.04) benign(0.011) TCGA-CQ-A4CE-01 7 149525064 149525064 G A SSPO RNA 0.10 TCGA-CQ-A4CE-01 7 73256457 73256457 T C WBSCR27 Missense_Mutation p.E5G 0.10 deleterious(0.04) benign(0.007) TCGA-CQ-A4CE-01 7 97852365 97852365 G T TECPR1 Silent p.L955L 0.25 TCGA-CQ-A4CE-01 8 146157911 146157911 A G ZNF16 Missense_Mutation p.S88P 0.17 tolerated(0.2) possibly_damaging(0.462) TCGA-CQ-A4CE-01 8 26238246 26238246 G A BNIP3L 5'Flank 0.08 TCGA-CQ-A4CE-01 9 75777732 75777732 A G ANXA1 Silent p.S170S 0.12 TCGA-CQ-A4CE-01 9 90584223 90584223 C G CDK20 Missense_Mutation p.K243N 0.18 tolerated(0.39) benign(0.005) TCGA-CQ-A4CE-01 X 149014047 149014047 C T MAGEA8 3'UTR 0.08 TCGA-CQ-A4CE-01 X 152159177 152159177 C T PNMA5 Missense_Mutation p.M322I 0.09 tolerated(0.17) benign(0.053) TCGA-CQ-A4CE-01 X 41206679 41206679 C T DDX3X Silent p.H628H 0.17 TCGA-CQ-A4CG-01 10 106737173 106737173 G T SORCS3 Silent p.R292R 0.39 TCGA-CQ-A4CG-01 10 113935464 113935464 C T GPAM Missense_Mutation p.G103R 0.22 deleterious(0) probably_damaging(0.921) TCGA-CQ-A4CG-01 10 22680762 22680762 C T SPAG6 Silent p.H370H 0.32 TCGA-CQ-A4CG-01 10 81706258 81706258 C T SFTPD Missense_Mutation p.R53Q 0.34 tolerated(0.1) benign(0.113) TCGA-CQ-A4CG-01 11 105924557 105924557 C A KBTBD3 Missense_Mutation p.D287Y 0.49 deleterious(0.02) probably_damaging(0.997) TCGA-CQ-A4CG-01 11 111784181 111784181 G T HSPB2 Missense_Mutation p.E37D 0.24 tolerated(1) benign(0.003) TCGA-CQ-A4CG-01 11 123810742 123810742 T A OR4D5 Missense_Mutation p.V140D 0.16 deleterious(0.02) possibly_damaging(0.845) TCGA-CQ-A4CG-01 11 123900524 123900524 G C OR10G8 Silent p.S65S 0.58 TCGA-CQ-A4CG-01 11 1780781 1780781 G A CTSD Missense_Mutation p.P106L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4CG-01 11 35454063 35454063 G A PAMR1 Silent p.I685I 0.25 TCGA-CQ-A4CG-01 11 533552 533552 C A HRAS Missense_Mutation p.K117N 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-CQ-A4CG-01 12 109948218 109948218 G A UBE3B Missense_Mutation p.R604Q 0.29 deleterious(0) probably_damaging(0.992) TCGA-CQ-A4CG-01 12 11506882 11506882 G T PRB1 Missense_Mutation p.P52H 0.33 deleterious_low_confidence(0) unknown(0) TCGA-CQ-A4CG-01 12 124832754 124832754 G T NCOR2 Silent p.R1317R 0.36 TCGA-CQ-A4CG-01 12 1943730 1943730 G T LRTM2 Missense_Mutation p.G319V 0.33 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4CG-01 12 56528147 56528147 C T ESYT1 Missense_Mutation p.P533S 0.29 deleterious(0) probably_damaging(0.993) TCGA-CQ-A4CG-01 12 83289634 83289634 T A TMTC2 Nonsense_Mutation p.L231* 0.38 TCGA-CQ-A4CG-01 13 30110113 30110113 C A SLC7A1 Silent p.L71L 0.25 TCGA-CQ-A4CG-01 13 52524492 52524492 C T ATP7B Missense_Mutation p.V831I 0.26 tolerated(1) benign(0.012) TCGA-CQ-A4CG-01 13 77459494 77459494 C T KCTD12 Missense_Mutation p.E264K 0.35 deleterious(0.03) possibly_damaging(0.88) TCGA-CQ-A4CG-01 14 42360793 42360793 G C LRFN5 Missense_Mutation p.A576P 0.15 deleterious(0.01) benign(0.342) TCGA-CQ-A4CG-01 14 50877246 50877246 C T CDKL1 RNA 0.54 TCGA-CQ-A4CG-01 14 91744368 91744368 G C CCDC88C Silent p.A1652A 0.43 TCGA-CQ-A4CG-01 14 96730375 96730375 C G BDKRB1 Missense_Mutation p.A119G 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CQ-A4CG-01 15 42174866 42174866 G A SPTBN5 Silent p.L655L 0.38 TCGA-CQ-A4CG-01 15 58253014 58253014 G T ALDH1A2 Missense_Mutation p.Q480K 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-CQ-A4CG-01 16 48234310 48234310 C A ABCC11 Missense_Mutation p.Q653H 0.41 deleterious(0) possibly_damaging(0.863) TCGA-CQ-A4CG-01 16 58147824 58147824 G T C16orf80 3'UTR 0.33 TCGA-CQ-A4CG-01 16 682656 682656 C A WFIKKN1 Silent p.G82G 0.29 TCGA-CQ-A4CG-01 16 80667073 80667073 G A CDYL2 Missense_Mutation p.A226V 0.38 tolerated(0.09) benign(0.001) TCGA-CQ-A4CG-01 16 87678395 87678395 G A JPH3 Missense_Mutation p.R305H 0.34 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4CG-01 17 38412764 38412764 C T WIPF2 Missense_Mutation p.T18I 0.36 deleterious(0.01) possibly_damaging(0.862) TCGA-CQ-A4CG-01 17 42882006 42882006 C T GJC1 Missense_Mutation p.V394I 0.31 tolerated(0.05) probably_damaging(0.939) TCGA-CQ-A4CG-01 17 43037528 43037528 G A C1QL1 3'UTR 0.26 TCGA-CQ-A4CG-01 17 4836597 4836597 G A GP1BA Missense_Mutation p.R233H 0.33 tolerated(0.12) probably_damaging(0.938) TCGA-CQ-A4CG-01 17 67102347 67102347 C A ABCA6 Nonsense_Mutation p.E799* 0.25 TCGA-CQ-A4CG-01 17 7330538 7330538 G C C17orf74 Missense_Mutation p.A410P 0.28 tolerated(0.14) probably_damaging(0.958) TCGA-CQ-A4CG-01 17 74569351 74569351 G A ST6GALNAC2 Silent p.A152A 0.40 TCGA-CQ-A4CG-01 18 56816786 56816786 T C SEC11C Silent p.S43S 0.07 TCGA-CQ-A4CG-01 18 77895068 77895068 C A ADNP2 Missense_Mutation p.T591N 0.58 deleterious(0.01) possibly_damaging(0.799) TCGA-CQ-A4CG-01 19 10385558 10385558 C T ICAM1 Missense_Mutation p.T62I 0.32 deleterious(0.02) probably_damaging(0.974) TCGA-CQ-A4CG-01 19 10428261 10428261 G T RAVER1 Missense_Mutation p.Q714K 0.42 deleterious(0.02) possibly_damaging(0.713) TCGA-CQ-A4CG-01 19 1465950 1465950 C T APC2 Missense_Mutation p.P884S 0.43 benign(0.071) TCGA-CQ-A4CG-01 19 15308354 15308354 C A NOTCH3 Nonsense_Mutation p.G52* 0.46 TCGA-CQ-A4CG-01 19 18775082 18775082 A G KLHL26 Missense_Mutation p.K32R 0.27 tolerated(0.3) benign(0.004) TCGA-CQ-A4CG-01 19 21512097 21512097 C T ZNF708 5'UTR 0.31 TCGA-CQ-A4CG-01 19 36350480 36350480 G A KIRREL2 Missense_Mutation p.R207Q 0.43 tolerated(0.32) benign(0.013) TCGA-CQ-A4CG-01 19 36363454 36363454 A C APLP1 Missense_Mutation p.H307P 0.32 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4CG-01 19 37618388 37618388 A C ZNF420 Missense_Mutation p.K165N 0.33 deleterious(0) possibly_damaging(0.758) TCGA-CQ-A4CG-01 19 39694790 39694790 C T SYCN Silent p.T35T 0.38 TCGA-CQ-A4CG-01 19 41354625 41354625 G A CYP2A6 Silent p.R129R 0.31 TCGA-CQ-A4CG-01 19 56466706 56466706 G A NLRP8 Missense_Mutation p.V428I 0.41 tolerated(0.28) benign(0.073) TCGA-CQ-A4CG-01 19 56953521 56953521 A C ZNF667 Missense_Mutation p.H281Q 0.29 tolerated(0.19) benign(0.021) TCGA-CQ-A4CG-01 1 113459887 113459887 G A SLC16A1 Missense_Mutation p.L381F 0.34 deleterious(0) possibly_damaging(0.895) TCGA-CQ-A4CG-01 1 11561627 11561627 A C PTCHD2 Missense_Mutation p.Q193P 0.48 tolerated_low_confidence(0.28) benign(0) TCGA-CQ-A4CG-01 1 120930249 120930249 C T FCGR1B Missense_Mutation p.E118K 0.28 deleterious(0.04) benign(0.291) TCGA-CQ-A4CG-01 1 200954026 200954026 C T KIF21B Missense_Mutation p.R1255H 0.47 deleterious(0.03) possibly_damaging(0.609) TCGA-CQ-A4CG-01 1 203044811 203044811 C T PPFIA4 Missense_Mutation p.P661L 0.40 deleterious(0) possibly_damaging(0.468) TCGA-CQ-A4CG-01 1 207649600 207649600 C T CR2 Missense_Mutation p.P913L 0.25 deleterious(0) possibly_damaging(0.866) TCGA-CQ-A4CG-01 1 47364534 47364534 C A CYP4Z2P RNA 0.27 TCGA-CQ-A4CG-01 1 70887340 70887340 A G CTH Silent p.A146A 0.25 TCGA-CQ-A4CG-01 20 33337511 33337511 G A NCOA6 Silent p.V829V 0.54 TCGA-CQ-A4CG-01 20 34022217 34022217 G A GDF5 Silent p.A332A 0.27 TCGA-CQ-A4CG-01 20 62071033 62071033 T C KCNQ2 Missense_Mutation p.D282G 0.46 deleterious(0.02) benign(0.246) TCGA-CQ-A4CG-01 21 30699670 30699670 G A BACH1 Missense_Mutation p.E509K 0.35 deleterious(0) probably_damaging(0.99) TCGA-CQ-A4CG-01 21 33830008 33830008 T G EVA1C Missense_Mutation p.V154G 0.31 deleterious(0) probably_damaging(1) TCGA-CQ-A4CG-01 21 45217866 45217866 C T RRP1 Silent p.L232L 0.36 TCGA-CQ-A4CG-01 2 125285025 125285025 C G CNTNAP5 Missense_Mutation p.I546M 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-CQ-A4CG-01 2 141459290 141459290 C A LRP1B Missense_Mutation p.G2143W 0.66 probably_damaging(0.965) TCGA-CQ-A4CG-01 2 178098975 178098975 A G NFE2L2 Missense_Mutation p.W24R 0.73 deleterious(0) probably_damaging(1) TCGA-CQ-A4CG-01 3 124157746 124157746 C G KALRN Silent p.V1018V 0.26 TCGA-CQ-A4CG-01 3 164780178 164780178 A G SI Missense_Mutation p.V334A 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-CQ-A4CG-01 3 169663566 169663566 C T RP11-379K17.4 RNA 0.24 TCGA-CQ-A4CG-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.64 deleterious(0.02) probably_damaging(0.959) TCGA-CQ-A4CG-01 3 3133867 3133867 C A IL5RA Intron 0.31 TCGA-CQ-A4CG-01 3 52417474 52417474 G A DNAH1 Missense_Mutation p.A2672T 0.34 benign(0.003) TCGA-CQ-A4CG-01 4 103947745 103947745 C A SLC9B2 Missense_Mutation p.A466S 0.38 deleterious(0.01) probably_damaging(0.959) TCGA-CQ-A4CG-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.35 deleterious(0.03) probably_damaging(1) TCGA-CQ-A4CG-01 4 16000015 16000015 C A PROM1 Missense_Mutation p.V559F 0.35 deleterious(0.03) possibly_damaging(0.696) TCGA-CQ-A4CG-01 4 187628153 187628154 - C FAT1 Frame_Shift_Ins p.T944Nfs*12 0.31 TCGA-CQ-A4CG-01 4 69512793 69512793 A G UGT2B15 3'UTR 0.34 TCGA-CQ-A4CG-01 5 88047695 88047695 G A MEF2C Missense_Mutation p.P208S 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-CQ-A4CG-01 6 33283037 33283037 G - ZBTB22 Frame_Shift_Del p.R553Efs*160 0.31 TCGA-CQ-A4CG-01 7 142622524 142622524 G A TRPV5 Intron 0.25 TCGA-CQ-A4CG-01 7 149515170 149515170 C G SSPO RNA 0.33 TCGA-CQ-A4CG-01 7 22985394 22985394 G A FAM126A Silent p.V460V 0.29 TCGA-CQ-A4CG-01 7 82595332 82595332 C T PCLO Missense_Mutation p.E1258K 0.32 unknown(0) TCGA-CQ-A4CG-01 7 99821545 99821545 G A GATS Missense_Mutation p.S124F 0.31 deleterious(0) probably_damaging(0.997) TCGA-CQ-A4CG-01 8 113275944 113275944 G C CSMD3 Silent p.G3262G 0.12 TCGA-CQ-A4CG-01 8 69445416 69445416 C G C8orf34 Intron 0.44 TCGA-CQ-A4CG-01 9 19576921 19576921 C T SLC24A2 Splice_Site p.X410_splice 0.41 TCGA-CQ-A4CG-01 9 96097814 96097814 G A C9orf129 Silent p.N69N 0.22 TCGA-CQ-A4CG-01 X 117676917 117676917 C T DOCK11 Missense_Mutation p.T83M 0.20 deleterious(0) probably_damaging(0.941) TCGA-CQ-A4CG-01 X 119037536 119037536 A C AKAP14 Missense_Mutation p.D83A 0.31 deleterious(0.04) benign(0.288) TCGA-CQ-A4CG-01 X 134483099 134483099 C A ZNF449 Missense_Mutation p.T140N 0.30 tolerated(1) benign(0) TCGA-CQ-A4CG-01 X 32509576 32509576 C T DMD Missense_Mutation p.E814K 0.29 possibly_damaging(0.837) TCGA-CQ-A4CG-01 X 49840630 49840630 C A CLCN5 Missense_Mutation p.T199K 0.29 tolerated(0.97) benign(0.004) TCGA-CQ-A4CG-01 X 69420163 69420163 A CC DGAT2L6 Frame_Shift_Ins p.H109Pfs*15 0.25 TCGA-CQ-A4CG-01 X 85218989 85218989 G T CHM Missense_Mutation p.A128E 0.23 tolerated(0.53) benign(0.001) TCGA-CQ-A4CG-01 X 9659730 9659730 T G TBL1X Missense_Mutation p.V243G 0.36 tolerated(0.29) benign(0.158) TCGA-CQ-A4CH-01 10 35929680 35929680 A G FZD8 Silent p.A226A 0.21 TCGA-CQ-A4CH-01 10 45924084 45924084 G A ALOX5 Missense_Mutation p.V285M 0.08 deleterious(0.03) probably_damaging(0.994) TCGA-CQ-A4CH-01 11 76814248 76814248 C T OMP Silent p.D121D 0.09 TCGA-CQ-A4CH-01 12 52145365 52145365 T A SCN8A Silent p.A786A 0.11 TCGA-CQ-A4CH-01 13 114322035 114322035 G A GRK1 Missense_Mutation p.A112T 0.22 tolerated(0.58) benign(0.017) TCGA-CQ-A4CH-01 13 29287531 29287531 C T SLC46A3 Missense_Mutation p.V116I 0.09 tolerated(0.93) benign(0.004) TCGA-CQ-A4CH-01 14 33243055 33243055 G A AKAP6 Missense_Mutation p.V1182I 0.12 tolerated(0.09) possibly_damaging(0.781) TCGA-CQ-A4CH-01 15 45391947 45391947 G A DUOX2 Nonsense_Mutation p.R1110* 0.07 TCGA-CQ-A4CH-01 17 7579703 7579703 A - TP53 Frame_Shift_Del p.L32Cfs*12 0.10 TCGA-CQ-A4CH-01 19 40715068 40715068 C T MAP3K10 Silent p.S498S 0.05 TCGA-CQ-A4CH-01 19 54203346 54203346 C T MIR518F RNA 0.09 TCGA-CQ-A4CH-01 1 100684276 100684276 G A DBT Missense_Mutation p.P154L 0.04 deleterious(0.01) benign(0.112) TCGA-CQ-A4CH-01 1 11561829 11561829 C T PTCHD2 Silent p.R260R 0.14 TCGA-CQ-A4CH-01 1 156542309 156542309 C T IQGAP3 Missense_Mutation p.A5T 0.04 tolerated_low_confidence(0.43) benign(0) TCGA-CQ-A4CH-01 22 30163555 30163555 C T UQCR10 Intron 0.15 TCGA-CQ-A4CH-01 22 30408409 30408409 C G MTMR3 Missense_Mutation p.L392V 0.03 deleterious(0) probably_damaging(0.997) TCGA-CQ-A4CH-01 2 182543278 182543278 T G NEUROD1 Missense_Mutation p.M104L 0.07 tolerated(0.28) benign(0.007) TCGA-CQ-A4CH-01 2 190584538 190584538 A G ANKAR Missense_Mutation p.Y822C 0.09 tolerated(0.18) benign(0.002) TCGA-CQ-A4CH-01 2 217234886 217234886 C T MARCH4 Missense_Mutation p.R33H 0.25 tolerated_low_confidence(0.12) probably_damaging(0.964) TCGA-CQ-A4CH-01 3 164758883 164758883 C T SI Splice_Site p.X669_splice 0.07 TCGA-CQ-A4CH-01 5 140537390 140537390 G A PCDHB17 3'UTR 0.06 TCGA-CQ-A4CH-01 5 140866238 140866238 C T PCDHGC4 Nonsense_Mutation p.R500* 0.06 TCGA-CQ-A4CH-01 6 10877387 10877387 C T GCM2 Missense_Mutation p.R110Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4CH-01 6 151336665 151336665 G A MTHFD1L Missense_Mutation p.A808T 0.07 deleterious(0.02) possibly_damaging(0.87) TCGA-CQ-A4CH-01 6 29640669 29640669 G T ZFP57 Missense_Mutation p.L407I 0.08 tolerated(0.11) benign(0.331) TCGA-CQ-A4CH-01 7 100677606 100677606 G T MUC17 Missense_Mutation p.G970V 0.03 possibly_damaging(0.791) TCGA-CQ-A4CH-01 7 72849938 72849938 T C FZD9 Missense_Mutation p.F534S 0.07 deleterious(0) benign(0.396) TCGA-CQ-A4CH-01 7 76254844 76254844 T G POMZP3 Missense_Mutation p.K74N 0.03 tolerated(0.14) benign(0.033) TCGA-CQ-A4CH-01 7 87537388 87537388 T A DBF4 Missense_Mutation p.N645K 0.05 tolerated(0.19) benign(0.002) TCGA-CQ-A4CH-01 8 25203031 25203031 C A DOCK5 Silent p.L886L 0.04 TCGA-CQ-A4CH-01 9 71155571 71155571 G C TMEM252 Missense_Mutation p.L54V 0.07 deleterious(0) probably_damaging(0.965) TCGA-CQ-A4CH-01 X 122759892 122759892 T C THOC2 Silent p.K976K 0.11 TCGA-CQ-A4CI-01 10 103912172 103912172 C T NOLC1 Missense_Mutation p.A2V 0.55 deleterious_low_confidence(0.03) possibly_damaging(0.751) TCGA-CQ-A4CI-01 10 127843862 127843862 G T ADAM12 Silent p.A91A 0.10 TCGA-CQ-A4CI-01 10 15254759 15254759 T A FAM171A1 3'UTR 0.43 TCGA-CQ-A4CI-01 10 24762969 24762970 - C KIAA1217 Frame_Shift_Ins p.K555Qfs*29 0.48 TCGA-CQ-A4CI-01 10 37422978 37422978 A T ANKRD30A Missense_Mutation p.H195L 0.05 tolerated(0.05) benign(0.07) TCGA-CQ-A4CI-01 10 73039707 73039707 G A UNC5B Missense_Mutation p.R70H 0.53 deleterious(0) benign(0.008) TCGA-CQ-A4CI-01 10 96748941 96748941 G A CYP2C9 3'UTR 0.32 TCGA-CQ-A4CI-01 11 105880545 105880545 A C MSANTD4 Missense_Mutation p.L252R 0.33 deleterious(0) possibly_damaging(0.548) TCGA-CQ-A4CI-01 11 118965860 118965860 C - H2AFX Frame_Shift_Del p.R82Pfs*20 0.30 TCGA-CQ-A4CI-01 11 18232123 18232123 C T RP11-113D6.10 3'UTR 0.57 TCGA-CQ-A4CI-01 11 4674813 4674819 AAAAATA - OR51E1 3'UTR 0.67 TCGA-CQ-A4CI-01 11 55904585 55904585 C G OR8J3 Missense_Mutation p.A204P 0.35 deleterious(0.01) benign(0.02) TCGA-CQ-A4CI-01 11 56058221 56058221 C A OR8H1 Missense_Mutation p.L106F 0.32 tolerated(0.92) benign(0.029) TCGA-CQ-A4CI-01 11 6191307 6191307 G T OR52B2 Missense_Mutation p.L84I 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-CQ-A4CI-01 12 107236418 107236418 C T RIC8B Silent p.L296L 0.40 TCGA-CQ-A4CI-01 12 125396203 125396203 A G UBC 3'UTR 0.40 TCGA-CQ-A4CI-01 12 21349925 21349925 G T SLCO1B1 Missense_Mutation p.W258L 0.29 deleterious(0) probably_damaging(0.999) TCGA-CQ-A4CI-01 12 2602465 2602465 C A CACNA1C Silent p.G342G 0.33 TCGA-CQ-A4CI-01 12 40689364 40689364 G A LRRK2 Missense_Mutation p.C1005Y 0.39 tolerated(1) benign(0.367) TCGA-CQ-A4CI-01 12 62261196 62261196 C A FAM19A2 Missense_Mutation p.R4I 0.42 deleterious_low_confidence(0) benign(0.008) TCGA-CQ-A4CI-01 12 93968823 93968823 G A SOCS2 Silent p.P155P 0.39 TCGA-CQ-A4CI-01 13 101717876 101717876 C T NALCN Missense_Mutation p.R1495Q 0.81 deleterious(0) probably_damaging(0.987) TCGA-CQ-A4CI-01 13 84455101 84455101 T C SLITRK1 Missense_Mutation p.H181R 0.68 deleterious(0) probably_damaging(1) TCGA-CQ-A4CI-01 13 86369375 86369375 C A SLITRK6 Silent p.L423L 0.08 TCGA-CQ-A4CI-01 14 106109985 106109985 G C IGHG2 Missense_Mutation p.I211M 0.11 deleterious(0.01) benign(0.211) TCGA-CQ-A4CI-01 14 30046468 30046468 G A PRKD1 Silent p.L905L 0.78 TCGA-CQ-A4CI-01 14 45628353 45628353 C T FANCM Missense_Mutation p.S484L 0.79 deleterious(0) benign(0.354) TCGA-CQ-A4CI-01 15 43818933 43818933 C T MAP1A Silent p.D1754D 0.40 TCGA-CQ-A4CI-01 15 59499903 59499903 T C LDHAL6B Missense_Mutation p.I255T 0.36 deleterious(0) possibly_damaging(0.886) TCGA-CQ-A4CI-01 15 65917572 65917572 C A SLC24A1 Missense_Mutation p.A385E 0.35 possibly_damaging(0.857) TCGA-CQ-A4CI-01 16 2578082 2578082 G A AMDHD2 Missense_Mutation p.R217Q 0.67 tolerated(0.18) benign(0.003) TCGA-CQ-A4CI-01 16 3781794 3781794 T C CREBBP Missense_Mutation p.M1625V 0.68 unknown(0) TCGA-CQ-A4CI-01 16 61854850 61854850 C A CDH8 Missense_Mutation p.G335C 0.35 deleterious(0) probably_damaging(1) TCGA-CQ-A4CI-01 16 76573651 76573651 C G CNTNAP4 Missense_Mutation p.Q1013E 0.48 tolerated(0.5) benign(0.012) TCGA-CQ-A4CI-01 16 89807210 89807210 A T FANCA Splice_Site p.X1276_splice 0.38 TCGA-CQ-A4CI-01 17 33289647 33289647 G A ZNF830 Silent p.E354E 0.40 TCGA-CQ-A4CI-01 17 61473152 61473152 C G TANC2 Missense_Mutation p.L960V 0.71 tolerated(0.07) possibly_damaging(0.688) TCGA-CQ-A4CI-01 17 7577005 7577025 TCCTGCTTGCTTACCTCGCTT CTGCTG TP53 Splice_Site p.X305_splice 0.51 TCGA-CQ-A4CI-01 17 79226361 79226361 C T SLC38A10 Missense_Mutation p.A527T 0.35 tolerated(0.66) benign(0) TCGA-CQ-A4CI-01 17 79278823 79278823 G A LINC00482 RNA 0.24 TCGA-CQ-A4CI-01 17 80045897 80045897 C T FASN Silent p.L933L 0.32 TCGA-CQ-A4CI-01 17 80478021 80478021 C G FOXK2 Missense_Mutation p.P86R 0.52 deleterious(0) benign(0.033) TCGA-CQ-A4CI-01 18 12493138 12493138 T C SPIRE1 Silent p.L374L 0.38 TCGA-CQ-A4CI-01 18 56586563 56586563 G A ZNF532 Silent p.P348P 0.67 TCGA-CQ-A4CI-01 19 18368530 18368530 G A KIAA1683 Silent p.P1188P 0.37 TCGA-CQ-A4CI-01 19 19740953 19740953 C T GMIP Missense_Mutation p.R911Q 0.30 tolerated(0.21) benign(0.104) TCGA-CQ-A4CI-01 19 33355054 33355054 C T SLC7A9 Silent p.V142V 0.60 TCGA-CQ-A4CI-01 19 4292750 4292750 C T TMIGD2 Missense_Mutation p.R232H 0.51 tolerated(0.29) benign(0) TCGA-CQ-A4CI-01 19 48602939 48602939 G T PLA2G4C Missense_Mutation p.Q156K 0.07 tolerated(0.06) possibly_damaging(0.606) TCGA-CQ-A4CI-01 19 58420556 58420556 T A ZNF417 Nonsense_Mutation p.K364* 0.56 TCGA-CQ-A4CI-01 19 9449975 9449975 A G ZNF559 Missense_Mutation p.Y47C 0.43 tolerated(0.07) benign(0.001) TCGA-CQ-A4CI-01 1 167097229 167097229 G A DUSP27 Nonsense_Mutation p.W954* 0.26 TCGA-CQ-A4CI-01 1 201047050 201047050 C T CACNA1S Missense_Mutation p.V526M 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-CQ-A4CI-01 1 205039043 205039043 G A CNTN2 Missense_Mutation p.R762Q 0.50 tolerated(0.37) benign(0.02) TCGA-CQ-A4CI-01 1 207874869 207874869 T A CR1L Missense_Mutation p.S412T 0.87 tolerated(0.26) benign(0.142) TCGA-CQ-A4CI-01 1 38230751 38230751 G A EPHA10 5'Flank 0.62 TCGA-CQ-A4CI-01 1 57535057 57535057 G T DAB1 Silent p.P213P 0.18 TCGA-CQ-A4CI-01 1 8386060 8386060 G A SLC45A1 Missense_Mutation p.A225T 0.74 tolerated(0.26) benign(0.067) TCGA-CQ-A4CI-01 20 20232255 20232255 A G C20orf26 Missense_Mutation p.K726E 0.47 tolerated(0.96) benign(0.022) TCGA-CQ-A4CI-01 20 21143487 21143487 G T RP4-777D9.2 RNA 0.27 TCGA-CQ-A4CI-01 21 47969742 47969742 C T DIP2A Nonsense_Mutation p.Q861* 0.61 TCGA-CQ-A4CI-01 22 19969136 19969136 C T ARVCF Missense_Mutation p.R165Q 0.39 deleterious(0.02) benign(0.004) TCGA-CQ-A4CI-01 2 103324610 103324610 G A SLC9A2 Missense_Mutation p.G701R 0.42 tolerated(0.42) benign(0.414) TCGA-CQ-A4CI-01 2 113418038 113418039 - A SLC20A1 Frame_Shift_Ins p.I562Nfs*37 0.34 TCGA-CQ-A4CI-01 2 128350410 128350410 G A MYO7B Silent p.S678S 0.53 TCGA-CQ-A4CI-01 2 131704373 131704373 A C ARHGEF4 Intron 0.25 TCGA-CQ-A4CI-01 2 133014578 133014578 C G MIR663B RNA 0.09 TCGA-CQ-A4CI-01 2 169938401 169938401 A G DHRS9 Missense_Mutation p.K104E 0.25 tolerated(0.14) benign(0.222) TCGA-CQ-A4CI-01 2 179612366 179612366 T C TTN Intron 0.29 TCGA-CQ-A4CI-01 2 234749348 234749348 C T HJURP Missense_Mutation p.R693H 0.71 tolerated(0.67) benign(0) TCGA-CQ-A4CI-01 2 27850447 27850447 C T CCDC121 Missense_Mutation p.E236K 0.39 tolerated(0.18) benign(0.009) TCGA-CQ-A4CI-01 2 33585721 33585721 T A LTBP1 Missense_Mutation p.L1353H 0.30 deleterious(0) probably_damaging(0.977) TCGA-CQ-A4CI-01 2 39281904 39281904 C T SOS1 Missense_Mutation p.E191K 0.38 tolerated(0.21) possibly_damaging(0.664) TCGA-CQ-A4CI-01 2 72725629 72725629 C T EXOC6B Missense_Mutation p.D431N 0.38 deleterious(0) benign(0.363) TCGA-CQ-A4CI-01 2 74684886 74684886 C T INO80B Silent p.C322C 0.43 TCGA-CQ-A4CI-01 2 88926546 88926546 C T EIF2AK3 Missense_Mutation p.G83R 0.52 deleterious(0.02) benign(0.445) TCGA-CQ-A4CI-01 2 90260018 90260018 G A IGKV1D-8 Missense_Mutation p.V41I 0.34 tolerated(0.05) possibly_damaging(0.529) TCGA-CQ-A4CI-01 3 10387081 10387081 G T ATP2B2 Missense_Mutation p.A897D 0.62 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4CI-01 3 10971010 10971010 C T SLC6A11 Silent p.L452L 0.58 TCGA-CQ-A4CI-01 3 112724609 112724609 G T C3orf17 Missense_Mutation p.T493N 0.31 deleterious(0.04) possibly_damaging(0.517) TCGA-CQ-A4CI-01 3 131624166 131624166 A T CPNE4 Missense_Mutation p.L41H 0.44 tolerated(0.54) probably_damaging(0.999) TCGA-CQ-A4CI-01 3 5249856 5249856 C T EDEM1 Missense_Mutation p.P473S 0.68 deleterious(0) probably_damaging(1) TCGA-CQ-A4CI-01 4 115858651 115858651 T A NDST4 Silent p.G410G 0.65 TCGA-CQ-A4CI-01 4 129012524 129012524 T C LARP1B Silent p.G175G 0.67 TCGA-CQ-A4CI-01 4 187549662 187549662 G A FAT1 Nonsense_Mutation p.Q1527* 0.64 TCGA-CQ-A4CI-01 4 66197808 66197808 G A EPHA5 Missense_Mutation p.S964F 0.65 tolerated(1) benign(0.378) TCGA-CQ-A4CI-01 4 71648890 71648890 C T RUFY3 Missense_Mutation p.S326F 0.75 deleterious(0.03) possibly_damaging(0.687) TCGA-CQ-A4CI-01 4 74283319 74283319 T A ALB Missense_Mutation p.L454Q 0.50 deleterious(0) probably_damaging(0.969) TCGA-CQ-A4CI-01 4 88723830 88723830 T C IBSP Missense_Mutation p.Y44H 0.62 deleterious(0) probably_damaging(0.95) TCGA-CQ-A4CI-01 5 140188074 140188074 G A PCDHA4 Silent p.S434S 0.59 TCGA-CQ-A4CI-01 5 23527778 23527778 G A PRDM9 Missense_Mutation p.V861I 0.35 tolerated(0.12) possibly_damaging(0.552) TCGA-CQ-A4CI-01 5 39311416 39311416 C T C9 Missense_Mutation p.D312N 0.42 tolerated(0.17) benign(0.344) TCGA-CQ-A4CI-01 5 41047840 41047840 C A MROH2B Nonsense_Mutation p.E571* 0.46 TCGA-CQ-A4CI-01 5 64976529 64976529 G C SGTB Nonsense_Mutation p.S191* 0.22 TCGA-CQ-A4CI-01 6 111701419 111701419 T C REV3L Missense_Mutation p.D407G 0.39 tolerated(0.1) benign(0) TCGA-CQ-A4CI-01 6 111701420 111701420 C A REV3L Missense_Mutation p.D407Y 0.40 deleterious(0) possibly_damaging(0.642) TCGA-CQ-A4CI-01 6 112671713 112671713 C T RFPL4B 3'UTR 0.25 TCGA-CQ-A4CI-01 6 12164245 12164245 G A HIVEP1 Missense_Mutation p.E2570K 0.59 deleterious(0.02) possibly_damaging(0.611) TCGA-CQ-A4CI-01 6 123319157 123319157 C A CLVS2 Silent p.R79R 0.39 TCGA-CQ-A4CI-01 6 148865655 148865655 C T SASH1 Missense_Mutation p.P1017S 0.37 tolerated_low_confidence(0.11) probably_damaging(0.998) TCGA-CQ-A4CI-01 6 152651011 152651011 T G SYNE1 Missense_Mutation p.S4937R 0.34 benign(0.015) TCGA-CQ-A4CI-01 6 158449877 158449877 A G SYNJ2 Missense_Mutation p.T102A 0.33 deleterious(0.01) benign(0.148) TCGA-CQ-A4CI-01 6 166845943 166845943 C G RPS6KA2 Missense_Mutation p.E464D 0.33 deleterious(0) probably_damaging(0.936) TCGA-CQ-A4CI-01 6 30585647 30585647 C T MRPS18B Missense_Mutation p.A2V 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CQ-A4CI-01 6 3225118 3225118 C G TUBB2B Missense_Mutation p.G402A 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-CQ-A4CI-01 6 56857233 56857233 G T BEND6 Nonsense_Mutation p.E60* 0.39 TCGA-CQ-A4CI-01 7 156476660 156476660 T C LMBR1 3'UTR 0.40 TCGA-CQ-A4CI-01 7 31736590 31736590 G C PPP1R17 Missense_Mutation p.E83Q 0.32 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CQ-A4CI-01 7 44737219 44737219 C T OGDH Silent p.F732F 0.38 TCGA-CQ-A4CI-01 7 6049123 6049123 C G AIMP2 Missense_Mutation p.H43Q 0.34 tolerated(0.21) benign(0.386) TCGA-CQ-A4CI-01 7 77764355 77764355 C T MAGI2 Missense_Mutation p.R1005H 0.56 tolerated(0.17) benign(0.013) TCGA-CQ-A4CI-01 7 897553 897553 G A SUN1 Missense_Mutation p.V495M 0.30 tolerated(0.05) benign(0.002) TCGA-CQ-A4CI-01 8 101300145 101300145 G A RNF19A Silent p.G86G 0.33 TCGA-CQ-A4CI-01 8 124453639 124453639 G C WDYHV1 Missense_Mutation p.G201A 0.71 tolerated(0.44) benign(0.278) TCGA-CQ-A4CI-01 8 1496892 1496892 G A DLGAP2 Silent p.P11P 0.70 TCGA-CQ-A4CI-01 8 16026258 16026258 G C MSR1 Silent p.V113V 0.56 TCGA-CQ-A4CI-01 8 92406045 92406045 C G SLC26A7 Silent p.G599G 0.33 TCGA-CQ-A4CI-01 8 92982962 92982962 C A RUNX1T1 Missense_Mutation p.R499L 0.44 deleterious(0.05) benign(0.446) TCGA-CQ-A4CI-01 9 137694768 137694768 G A COL5A1 Missense_Mutation p.R1014H 0.48 unknown(0) TCGA-CQ-A4CI-01 9 140811698 140811698 G A CACNA1B Missense_Mutation p.E261K 0.37 deleterious(0.03) benign(0.009) TCGA-CQ-A4CI-01 9 21227775 21227775 G C IFNA17 Missense_Mutation p.P133R 0.77 deleterious(0.02) possibly_damaging(0.714) TCGA-CQ-A4CI-01 9 5522540 5522540 A G PDCD1LG2 5'UTR 0.73 TCGA-CQ-A4CI-01 9 5763392 5763392 C T KIAA1432 Missense_Mutation p.L789F 0.65 deleterious(0) probably_damaging(0.998) TCGA-CQ-A4CI-01 9 80866898 80866898 C G CEP78 Missense_Mutation p.L383V 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-CQ-A4CI-01 X 101381889 101381889 G T TCEAL2 Missense_Mutation p.K29N 0.73 deleterious(0.03) benign(0.403) TCGA-CQ-A4CI-01 X 37029109 37029109 C A FAM47C Missense_Mutation p.P876T 0.80 tolerated(0.38) benign(0.19) TCGA-CQ-A4CI-01 X 37029110 37029110 C T FAM47C Missense_Mutation p.P876L 0.80 tolerated(0.63) possibly_damaging(0.798) TCGA-CQ-A4CI-01 X 54259280 54259280 T A WNK3 Missense_Mutation p.Q1601L 0.85 deleterious(0) benign(0.343) TCGA-CQ-A4CI-01 X 65427085 65427085 A G HEPH Silent p.R834R 0.76 TCGA-CQ-A4CI-01 X 77913745 77913745 G T ZCCHC5 Missense_Mutation p.A58D 0.73 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-CQ-A4CI-01 X 89177196 89177196 G A TGIF2LX Missense_Mutation p.A38T 0.82 tolerated(1) probably_damaging(0.978) TCGA-CR-5243-01 10 103867955 103867955 G A LDB1 Silent p.S377S 0.38 TCGA-CR-5243-01 10 63852287 63852287 T C ARID5B Missense_Mutation p.V1022A 0.38 tolerated(1) benign(0.059) TCGA-CR-5243-01 10 93719841 93719841 T G BTAF1 Missense_Mutation p.L398R 0.35 deleterious(0) possibly_damaging(0.806) TCGA-CR-5243-01 12 129278685 129278685 A G SLC15A4 3'UTR 0.10 TCGA-CR-5243-01 12 49418485 49418485 C T KMT2D Missense_Mutation p.G5310R 0.42 unknown(0) TCGA-CR-5243-01 12 51072578 51072578 C T DIP2B Missense_Mutation p.R345C 0.36 deleterious(0.01) possibly_damaging(0.533) TCGA-CR-5243-01 12 52307464 52307464 G A ACVRL1 Silent p.R145R 0.37 TCGA-CR-5243-01 12 53876860 53876860 C A MAP3K12 Missense_Mutation p.G576V 0.47 tolerated(0.24) benign(0.202) TCGA-CR-5243-01 13 113530144 113530144 C T ATP11A Silent p.S1072S 0.72 TCGA-CR-5243-01 13 25068806 25068806 C G PARP4 Missense_Mutation p.E216Q 0.70 tolerated(0.08) benign(0.265) TCGA-CR-5243-01 14 103371927 103371927 C T TRAF3 Nonsense_Mutation p.R505* 0.81 TCGA-CR-5243-01 14 38724510 38724510 C A CLEC14A Missense_Mutation p.G240C 0.06 deleterious(0.01) probably_damaging(0.99) TCGA-CR-5243-01 14 44976120 44976120 C A FSCB Missense_Mutation p.S24I 0.41 deleterious(0) benign(0.283) TCGA-CR-5243-01 14 56755238 56755238 C T PELI2 Silent p.I131I 0.38 TCGA-CR-5243-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.44 TCGA-CR-5243-01 16 11931542 11931542 G C RSL1D1 3'UTR 0.38 TCGA-CR-5243-01 17 36091723 36091723 C T HNF1B Missense_Mutation p.R303H 0.37 deleterious(0) probably_damaging(0.998) TCGA-CR-5243-01 17 42427094 42427094 C T GRN Silent p.D108D 0.32 TCGA-CR-5243-01 17 76851860 76851860 G A TIMP2 Silent p.N184N 0.39 TCGA-CR-5243-01 17 7751611 7751611 C T KDM6B Nonsense_Mutation p.R669* 0.43 TCGA-CR-5243-01 17 78389501 78389501 G A ENDOV Nonsense_Mutation p.W36* 0.12 TCGA-CR-5243-01 18 18547018 18547018 G A ROCK1 Missense_Mutation p.A1071V 0.38 tolerated(0.24) benign(0.001) TCGA-CR-5243-01 18 9535827 9535827 G A RALBP1 Silent p.P620P 0.33 TCGA-CR-5243-01 19 10887831 10887831 G C DNM2 Silent p.L209L 0.32 TCGA-CR-5243-01 19 12126251 12126251 C T ZNF433 Silent p.P477P 0.30 TCGA-CR-5243-01 19 20228642 20228642 T C ZNF90 Silent p.D93D 0.17 TCGA-CR-5243-01 19 35800939 35800939 G A MAG Missense_Mutation p.R465H 0.35 deleterious(0.05) possibly_damaging(0.467) TCGA-CR-5243-01 19 44470025 44470025 A - ZNF221 Frame_Shift_Del p.I125Yfs*9 0.25 TCGA-CR-5243-01 19 49954804 49954804 C G PIH1D1 Missense_Mutation p.G10R 0.21 deleterious_low_confidence(0.01) benign(0.19) TCGA-CR-5243-01 19 50216294 50216294 C G CPT1C Missense_Mutation p.I733M 0.35 deleterious(0) probably_damaging(0.95) TCGA-CR-5243-01 19 50720993 50720993 C A MYH14 Missense_Mutation p.A176E 0.39 deleterious(0) probably_damaging(0.939) TCGA-CR-5243-01 19 53856710 53856710 T G ZNF845 Missense_Mutation p.S928A 0.37 tolerated(0.08) benign(0.277) TCGA-CR-5243-01 1 151804261 151804261 G A RORC 5'UTR 0.37 TCGA-CR-5243-01 1 243727052 243727052 G A AKT3 Silent p.F306F 0.22 TCGA-CR-5243-01 1 24465129 24465129 G A IL22RA1 Missense_Mutation p.T40M 0.14 tolerated(0.09) possibly_damaging(0.548) TCGA-CR-5243-01 1 36474311 36474311 C G AGO3 Missense_Mutation p.H272D 0.29 deleterious(0) probably_damaging(0.909) TCGA-CR-5243-01 1 46745880 46745880 C T LRRC41 Silent p.Q668Q 0.28 TCGA-CR-5243-01 1 91727872 91727872 G T HFM1 Missense_Mutation p.N1388K 0.36 tolerated_low_confidence(1) benign(0) TCGA-CR-5243-01 20 30310086 30310086 G A BCL2L1 5'UTR 0.21 TCGA-CR-5243-01 20 30784277 30784277 C T PLAGL2 Missense_Mutation p.R490H 0.13 tolerated(0.42) benign(0.128) TCGA-CR-5243-01 20 3652265 3652265 C T ADAM33 Missense_Mutation p.G623D 0.09 deleterious(0.01) possibly_damaging(0.532) TCGA-CR-5243-01 22 38154082 38154082 C G TRIOBP Silent p.L2050L 0.38 TCGA-CR-5243-01 22 50961570 50961570 G C NCAPH2 Missense_Mutation p.R552P 0.46 deleterious(0) probably_damaging(1) TCGA-CR-5243-01 2 129026403 129026403 C G HS6ST1 Missense_Mutation p.R190P 0.25 deleterious(0) probably_damaging(0.999) TCGA-CR-5243-01 2 231334791 231334791 C A SP100 Missense_Mutation p.S469R 0.09 deleterious(0.01) possibly_damaging(0.838) TCGA-CR-5243-01 2 79313560 79313560 G T REG1B Missense_Mutation p.A85D 0.47 deleterious(0.04) probably_damaging(0.941) TCGA-CR-5243-01 2 9770492 9770492 G C YWHAQ Silent p.T30T 0.45 TCGA-CR-5243-01 3 141884548 141884548 C A GK5 Missense_Mutation p.Q502H 0.29 deleterious(0.01) probably_damaging(0.923) TCGA-CR-5243-01 3 14960293 14960293 C A FGD5 Nonsense_Mutation p.Y1174* 0.65 TCGA-CR-5243-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.32 deleterious(0.04) probably_damaging(0.96) TCGA-CR-5243-01 3 183855991 183855991 G A EIF2B5 Missense_Mutation p.R241Q 0.28 deleterious(0.01) benign(0.283) TCGA-CR-5243-01 3 190366168 190366168 C T IL1RAP Intron 0.26 TCGA-CR-5243-01 3 192980878 192980878 G C HRASLS Missense_Mutation p.D192H 0.28 deleterious(0.01) probably_damaging(1) TCGA-CR-5243-01 4 129792809 129792809 C T JADE1 Missense_Mutation p.R641C 0.36 deleterious(0) possibly_damaging(0.724) TCGA-CR-5243-01 4 177142616 177142616 C T ASB5 Missense_Mutation p.E174K 0.39 deleterious(0.03) probably_damaging(0.951) TCGA-CR-5243-01 4 5664846 5664846 T G EVC2 Missense_Mutation p.Q378P 0.22 deleterious(0.02) benign(0.133) TCGA-CR-5243-01 4 87653773 87653773 G A PTPN13 Missense_Mutation p.R571Q 0.30 tolerated(0.79) possibly_damaging(0.566) TCGA-CR-5243-01 4 88973183 88973183 C G PKD2 Nonsense_Mutation p.S530* 0.18 TCGA-CR-5243-01 5 130987626 130987626 C G FNIP1 Missense_Mutation p.V1059L 0.31 deleterious(0) probably_damaging(0.995) TCGA-CR-5243-01 5 131721136 131721136 C T SLC22A5 Missense_Mutation p.R257W 0.17 deleterious(0.01) possibly_damaging(0.477) TCGA-CR-5243-01 5 132736645 132736645 C A FSTL4 Missense_Mutation p.C65F 0.29 deleterious(0) probably_damaging(0.999) TCGA-CR-5243-01 5 133707271 133707271 G A UBE2B 5'UTR 0.47 TCGA-CR-5243-01 5 13871017 13871017 G A DNAH5 Silent p.N1231N 0.16 TCGA-CR-5243-01 5 159437650 159437650 C A TTC1 Missense_Mutation p.Q39K 0.06 tolerated_low_confidence(0.89) benign(0.021) TCGA-CR-5243-01 5 169508958 169508958 G A DOCK2 Silent p.R1800R 0.39 TCGA-CR-5243-01 6 118786458 118786459 - A CEP85L 3'UTR 0.28 TCGA-CR-5243-01 6 155145427 155145427 G A SCAF8 Silent p.S662S 0.30 TCGA-CR-5243-01 6 26104203 26104203 G C HIST1H4C Missense_Mutation p.G10R 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-CR-5243-01 6 96990812 96990812 G A UFL1 Missense_Mutation p.R441K 0.42 tolerated(0.05) probably_damaging(0.997) TCGA-CR-5243-01 7 100877667 100877667 C T CLDN15 Missense_Mutation p.G92S 0.27 tolerated(0.08) possibly_damaging(0.661) TCGA-CR-5243-01 7 143657530 143657530 C G OR2F1 Missense_Mutation p.S156C 0.36 deleterious(0.03) probably_damaging(0.997) TCGA-CR-5243-01 7 143956023 143956023 C T OR2A7 Silent p.Q233Q 0.15 TCGA-CR-5243-01 7 1588206 1588206 C T TMEM184A Missense_Mutation p.V255I 0.28 tolerated(0.08) benign(0.104) TCGA-CR-5243-01 7 42005532 42005532 G T GLI3 Missense_Mutation p.Q1047K 0.39 tolerated(0.07) possibly_damaging(0.593) TCGA-CR-5243-01 9 139402754 139402754 G C NOTCH1 Missense_Mutation p.C1085W 0.36 deleterious(0) probably_damaging(0.981) TCGA-CR-5243-01 9 84549429 84549429 T C RP11-383M4.6 Intron 0.18 TCGA-CR-5243-01 9 96291641 96291641 G A FAM120A Missense_Mutation p.G505S 0.47 tolerated(0.36) benign(0.041) TCGA-CR-5243-01 X 23411520 23411520 G A PTCHD1 Missense_Mutation p.D629N 0.35 deleterious(0) probably_damaging(0.999) TCGA-CR-5247-01 10 5435651 5435651 C T TUBAL3 Silent p.A390A 0.41 TCGA-CR-5247-01 10 60549208 60549208 G A BICC1 Missense_Mutation p.A263T 0.46 tolerated(0.07) benign(0.206) TCGA-CR-5247-01 10 68686126 68686126 C T LRRTM3 5'UTR 0.27 TCGA-CR-5247-01 10 68686715 68686715 T C LRRTM3 Missense_Mutation p.V14A 0.43 tolerated(0.42) benign(0.056) TCGA-CR-5247-01 11 102988373 102988373 A T DYNC2H1 Silent p.G260G 0.03 TCGA-CR-5247-01 11 55339991 55339991 T A OR4C16 Missense_Mutation p.Y130N 0.39 deleterious(0) probably_damaging(0.999) TCGA-CR-5247-01 11 55594850 55594850 C A OR5L2 Missense_Mutation p.S52R 0.31 deleterious(0) benign(0.009) TCGA-CR-5247-01 11 62362870 62362870 T C MTA2 Missense_Mutation p.N450S 0.48 tolerated(0.07) benign(0.152) TCGA-CR-5247-01 11 71903251 71903253 CTT - FOLR1 In_Frame_Del p.L13del 0.29 TCGA-CR-5247-01 11 76061960 76061960 G C PRKRIR Missense_Mutation p.T745R 0.21 deleterious(0.01) benign(0.126) TCGA-CR-5247-01 12 130185156 130185156 G A TMEM132D Missense_Mutation p.A56V 0.42 deleterious(0) possibly_damaging(0.527) TCGA-CR-5247-01 12 57111165 57111165 A T NACA Intron 0.30 TCGA-CR-5247-01 12 66717930 66717930 A G HELB Missense_Mutation p.N822S 0.24 tolerated(0.33) benign(0.114) TCGA-CR-5247-01 14 22508941 22508941 C A TRAV20 Silent p.V11V 0.57 TCGA-CR-5247-01 14 24572431 24572431 C T PCK2 Missense_Mutation p.R479C 0.10 tolerated(0.08) probably_damaging(1) TCGA-CR-5247-01 14 24842446 24842446 C T NFATC4 Missense_Mutation p.R540W 0.21 deleterious(0) probably_damaging(0.996) TCGA-CR-5247-01 15 28389924 28389924 C T HERC2 Missense_Mutation p.E3679K 0.29 probably_damaging(0.967) TCGA-CR-5247-01 15 31234390 31234390 A G FAN1 3'UTR 0.34 TCGA-CR-5247-01 16 15029067 15029067 C T NPIPA1 5'Flank 0.25 TCGA-CR-5247-01 16 4945271 4945272 - T PPL Frame_Shift_Ins p.E413Gfs*46 0.25 TCGA-CR-5247-01 17 19188962 19188962 C T EPN2 Missense_Mutation p.R209C 0.23 tolerated(0.07) benign(0.002) TCGA-CR-5247-01 17 27051713 27051713 G C TLCD1 Missense_Mutation p.Q187E 0.06 deleterious(0.02) possibly_damaging(0.801) TCGA-CR-5247-01 17 5357145 5357145 G A DHX33 Nonsense_Mutation p.Q435* 0.10 TCGA-CR-5247-01 17 76481086 76481086 A T DNAH17 Missense_Mutation p.S2491T 0.41 benign(0.055) TCGA-CR-5247-01 17 79108261 79108261 G A AATK Silent p.L32L 0.40 TCGA-CR-5247-01 18 32917689 32917689 T C ZNF24 Missense_Mutation p.E205G 0.58 deleterious(0.01) benign(0.009) TCGA-CR-5247-01 18 55996286 55996286 G A NEDD4L Missense_Mutation p.R247Q 0.62 tolerated(0.19) possibly_damaging(0.594) TCGA-CR-5247-01 19 2987144 2987144 A G TLE6 Missense_Mutation p.K150R 0.17 tolerated(0.22) benign(0.058) TCGA-CR-5247-01 19 37619779 37619780 - T ZNF420 Frame_Shift_Ins p.L630Sfs*11 0.31 TCGA-CR-5247-01 19 40030302 40030302 G A EID2 Missense_Mutation p.L140F 0.18 deleterious(0.01) benign(0.322) TCGA-CR-5247-01 19 49652247 49652247 C T PPFIA3 Intron 0.26 TCGA-CR-5247-01 19 50906777 50906777 G C POLD1 Missense_Mutation p.D389H 0.12 deleterious(0) probably_damaging(1) TCGA-CR-5247-01 19 52518941 52518941 C T ZNF614 3'UTR 0.44 TCGA-CR-5247-01 19 55175317 55175317 G C LILRB4 Missense_Mutation p.R59P 0.23 deleterious(0.02) possibly_damaging(0.69) TCGA-CR-5247-01 1 113661886 113661886 T G LRIG2 Missense_Mutation p.D904E 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-CR-5247-01 1 15773102 15773102 C T CTRC 3'UTR 0.22 TCGA-CR-5247-01 1 158596754 158596754 A G SPTA1 Missense_Mutation p.I1903T 0.23 deleterious(0.04) possibly_damaging(0.872) TCGA-CR-5247-01 1 173155865 173155865 G A TNFSF4 Silent p.N114N 0.21 TCGA-CR-5247-01 1 176998825 176998825 G A ASTN1 Silent p.N355N 0.53 TCGA-CR-5247-01 1 190129849 190129849 C A BRINP3 Missense_Mutation p.S378I 0.48 deleterious(0.01) benign(0.168) TCGA-CR-5247-01 1 226027611 226027611 C T EPHX1 Silent p.F268F 0.21 TCGA-CR-5247-01 1 240601400 240601400 A T FMN2 Missense_Mutation p.K1650N 0.09 probably_damaging(0.974) TCGA-CR-5247-01 1 32089283 32089283 C T HCRTR1 Silent p.L300L 0.14 TCGA-CR-5247-01 1 32263807 32263824 CCCTTTTCTCCTCCTGGT - SPOCD1 Splice_Site p.X710_splice 0.19 TCGA-CR-5247-01 1 35365842 35365842 G A DLGAP3 Silent p.T380T 0.21 TCGA-CR-5247-01 1 6202630 6202632 GAT - CHD5 In_Frame_Del p.I693del 0.21 TCGA-CR-5247-01 20 1629753 1629753 C T SIRPG Silent p.G125G 0.40 TCGA-CR-5247-01 20 39751988 39751988 A G TOP1 3'UTR 0.25 TCGA-CR-5247-01 20 420957 420957 C T TBC1D20 Missense_Mutation p.V235I 0.14 tolerated(0.54) benign(0.079) TCGA-CR-5247-01 20 56191333 56191333 C T ZBP1 Missense_Mutation p.E76K 0.27 tolerated(0.87) possibly_damaging(0.651) TCGA-CR-5247-01 22 30860831 30860831 G T SEC14L3 Missense_Mutation p.R214S 0.15 tolerated(0.06) benign(0.026) TCGA-CR-5247-01 2 100055565 100055565 C T REV1 Silent p.K237K 0.11 TCGA-CR-5247-01 2 102636165 102636165 C T IL1R2 Silent p.L193L 0.28 TCGA-CR-5247-01 2 108478175 108478175 A - RGPD4 Frame_Shift_Del p.N729Ifs*15 0.08 TCGA-CR-5247-01 2 136566782 136566782 G A LCT Silent p.Y1045Y 0.34 TCGA-CR-5247-01 2 136610440 136610440 T C MCM6 Missense_Mutation p.R558G 0.36 tolerated(0.34) benign(0.02) TCGA-CR-5247-01 2 175618018 175618018 C G CHRNA1 Intron 0.37 TCGA-CR-5247-01 2 227966581 227966581 C A COL4A4 Missense_Mutation p.K325N 0.36 probably_damaging(0.984) TCGA-CR-5247-01 2 232326373 232326378 TCCTCG - NCL In_Frame_Del p.D168_E169del 0.33 TCGA-CR-5247-01 2 27121496 27121496 G C DPYSL5 Missense_Mutation p.M43I 0.11 tolerated(1) possibly_damaging(0.885) TCGA-CR-5247-01 2 33952117 33952117 A - AC009499.1 Intron 0.45 TCGA-CR-5247-01 2 79254230 79254230 C T REG3G Missense_Mutation p.S89F 0.16 deleterious(0) probably_damaging(0.992) TCGA-CR-5247-01 3 169814934 169814934 T C PHC3 3'UTR 0.54 TCGA-CR-5247-01 3 183368865 183368865 G A KLHL24 Missense_Mutation p.V241I 0.18 tolerated(0.2) possibly_damaging(0.905) TCGA-CR-5247-01 3 49700618 49700618 G T BSN Missense_Mutation p.R3676L 0.23 unknown(0) TCGA-CR-5247-01 4 134071659 134071659 T C PCDH10 Missense_Mutation p.F122L 0.15 deleterious(0) probably_damaging(0.983) TCGA-CR-5247-01 4 164271702 164271702 T C NPY5R Missense_Mutation p.F93L 0.30 tolerated(0.12) probably_damaging(0.999) TCGA-CR-5247-01 4 46334667 46334667 C T GABRA2 Missense_Mutation p.V74M 0.27 deleterious(0.01) possibly_damaging(0.879) TCGA-CR-5247-01 4 52862054 52862054 C T LRRC66 Silent p.A378A 0.35 TCGA-CR-5247-01 5 141359811 141359811 C G RNF14 Missense_Mutation p.Q320E 0.65 tolerated(0.1) benign(0.006) TCGA-CR-5247-01 5 176709563 176709563 A G NSD1 Missense_Mutation p.Y1997C 0.68 deleterious(0) probably_damaging(1) TCGA-CR-5247-01 5 7873624 7873624 C T MTRR Missense_Mutation p.R117W 0.20 deleterious(0.05) benign(0.081) TCGA-CR-5247-01 6 155485661 155485661 C A TIAM2 Missense_Mutation p.A714E 0.35 deleterious(0) probably_damaging(0.964) TCGA-CR-5247-01 6 26204885 26204885 G A HIST1H4E Missense_Mutation p.G5S 0.30 tolerated_low_confidence(0.08) unknown(0) TCGA-CR-5247-01 6 30546133 30546133 C A ABCF1 Missense_Mutation p.P118T 0.05 tolerated_low_confidence(0.37) benign(0.033) TCGA-CR-5247-01 6 33762588 33762588 C T MLN 3'UTR 0.09 TCGA-CR-5247-01 7 100484575 100484575 G A SRRT Missense_Mutation p.E603K 0.14 tolerated(0.27) benign(0.016) TCGA-CR-5247-01 7 101844779 101844779 C T CUX1 Silent p.S745S 0.07 TCGA-CR-5247-01 7 1523641 1523641 A G INTS1 Missense_Mutation p.W1143R 0.21 deleterious(0) probably_damaging(0.979) TCGA-CR-5247-01 7 1523644 1523644 T C INTS1 Missense_Mutation p.S1142G 0.22 deleterious(0) benign(0.071) TCGA-CR-5247-01 7 17382646 17382646 A T AHR Missense_Mutation p.E835D 0.48 tolerated_low_confidence(0.15) benign(0.02) TCGA-CR-5247-01 7 18975526 18975526 T G HDAC9 Missense_Mutation p.D966E 0.26 deleterious(0) probably_damaging(0.924) TCGA-CR-5247-01 7 23213806 23213806 C T KLHL7 Silent p.T550T 0.39 TCGA-CR-5247-01 8 116430580 116430580 C G TRPS1 Missense_Mutation p.G934A 0.82 deleterious(0) probably_damaging(0.999) TCGA-CR-5247-01 8 142445304 142445304 G A PTP4A3 3'Flank 0.76 TCGA-CR-5247-01 9 131708963 131708963 T G DOLK Missense_Mutation p.Q207P 0.53 tolerated(0.06) probably_damaging(0.931) TCGA-CR-5247-01 9 18777750 18777750 C A ADAMTSL1 Missense_Mutation p.Q1175K 0.43 tolerated(0.93) possibly_damaging(0.647) TCGA-CR-5247-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.60 TCGA-CR-5247-01 9 74834409 74834409 T A GDA Missense_Mutation p.M198K 0.41 deleterious(0.02) benign(0.345) TCGA-CR-5247-01 X 109943927 109943927 T C CHRDL1 Silent p.E188E 0.29 TCGA-CR-5247-01 X 130218231 130218231 G T ARHGAP36 Missense_Mutation p.A200S 0.59 tolerated(1) benign(0.005) TCGA-CR-5247-01 X 155233408 155233408 A G IL9R Silent p.P107P 0.30 TCGA-CR-5247-01 X 31838157 31838157 C T DMD Missense_Mutation p.R2415H 0.64 benign(0) TCGA-CR-5247-01 X 91873697 91873697 C A PCDH11X Missense_Mutation p.H1268N 0.47 tolerated_low_confidence(0.08) benign(0.07) TCGA-CR-5248-01 10 106074129 106074129 C A ITPRIP 3'UTR 0.19 TCGA-CR-5248-01 10 114925798 114925798 C - TCF7L2 3'UTR 0.16 TCGA-CR-5248-01 10 124896741 124896741 G A HMX3 Missense_Mutation p.E190K 0.29 deleterious(0.03) benign(0.346) TCGA-CR-5248-01 10 127409947 127409947 C G EDRF1 Missense_Mutation p.L95V 0.16 tolerated(0.18) possibly_damaging(0.466) TCGA-CR-5248-01 10 134165110 134165110 G A LRRC27 Splice_Site p.X309_splice 0.22 TCGA-CR-5248-01 10 13698869 13698869 G A FRMD4A Missense_Mutation p.P907L 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-CR-5248-01 10 45956749 45956749 G A MARCH8 Missense_Mutation p.S118F 0.10 deleterious(0) probably_damaging(0.997) TCGA-CR-5248-01 10 75567373 75567373 A G NDST2 Silent p.R258R 0.18 TCGA-CR-5248-01 10 81063878 81063878 C T ZMIZ1 Silent p.I744I 0.23 TCGA-CR-5248-01 10 96005912 96005912 C G PLCE1 Missense_Mutation p.S877C 0.06 deleterious(0) probably_damaging(0.928) TCGA-CR-5248-01 10 96109029 96109029 C G NOC3L Missense_Mutation p.R412T 0.20 tolerated(0.09) benign(0.025) TCGA-CR-5248-01 10 98715469 98715469 A - LCOR Frame_Shift_Del p.M366* 0.11 TCGA-CR-5248-01 10 99131844 99131844 G A RRP12 Missense_Mutation p.R777W 0.20 tolerated(0.18) benign(0.258) TCGA-CR-5248-01 11 1096554 1096554 G A MUC2 Missense_Mutation p.M2193I 0.20 unknown(0) TCGA-CR-5248-01 11 111428359 111428359 G A LAYN Missense_Mutation p.C259Y 0.09 tolerated(0.77) benign(0.001) TCGA-CR-5248-01 11 122720855 122720855 G A CRTAM Silent p.L42L 0.42 TCGA-CR-5248-01 11 124135413 124135413 G T OR8G5 Nonsense_Mutation p.E231* 0.30 TCGA-CR-5248-01 11 32635181 32635181 T - CCDC73 Frame_Shift_Del p.T895Lfs*8 0.12 TCGA-CR-5248-01 11 44104716 44104716 C T ACCS Intron 0.11 TCGA-CR-5248-01 11 4470668 4470668 C G OR52K2 Missense_Mutation p.F33L 0.09 deleterious(0.02) possibly_damaging(0.685) TCGA-CR-5248-01 11 51515816 51515816 C T OR4C46 Silent p.L179L 0.19 TCGA-CR-5248-01 11 57003609 57003609 G T APLNR Silent p.I290I 0.10 TCGA-CR-5248-01 11 58125821 58125821 G C OR5B17 Missense_Mutation p.S241C 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-5248-01 11 61511546 61511546 C T DAGLA Missense_Mutation p.S905L 0.18 deleterious_low_confidence(0.04) benign(0.014) TCGA-CR-5248-01 11 61533161 61533161 C G MYRF Missense_Mutation p.I37M 0.20 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 11 62490138 62490138 C G HNRNPUL2 Missense_Mutation p.E344Q 0.19 tolerated(0.1) benign(0.008) TCGA-CR-5248-01 11 6262988 6262988 G A CNGA4 Silent p.E415E 0.38 TCGA-CR-5248-01 11 64009964 64009964 C G FKBP2 Silent p.V35V 0.08 TCGA-CR-5248-01 11 64851416 64851416 G C CDCA5 Missense_Mutation p.A12G 0.20 deleterious(0.05) benign(0.166) TCGA-CR-5248-01 11 64884391 64884391 G C ZNHIT2 Silent p.L245L 0.30 TCGA-CR-5248-01 11 65380700 65380700 G T MAP3K11 Silent p.I176I 0.12 TCGA-CR-5248-01 11 67200087 67200087 G A RPS6KB2 Silent p.T158T 0.22 TCGA-CR-5248-01 11 70208451 70208451 G A PPFIA1 Missense_Mutation p.G908R 0.13 deleterious(0) probably_damaging(1) TCGA-CR-5248-01 11 71903275 71903275 G - FOLR1 Frame_Shift_Del p.E21Rfs*18 0.10 TCGA-CR-5248-01 11 9810748 9810748 C T SBF2 Missense_Mutation p.E1614K 0.22 tolerated(0.56) benign(0.017) TCGA-CR-5248-01 11 9810835 9810835 C T SBF2 Missense_Mutation p.E1585K 0.21 tolerated(0.1) benign(0.133) TCGA-CR-5248-01 12 109490463 109490463 C T USP30 5'UTR 0.31 TCGA-CR-5248-01 12 10954157 10954157 G A TAS2R7 3'UTR 0.29 TCGA-CR-5248-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.20 TCGA-CR-5248-01 12 112492367 112492367 C T NAA25 Missense_Mutation p.E485K 0.33 tolerated(0.28) benign(0.122) TCGA-CR-5248-01 12 112605283 112605283 G A HECTD4 Silent p.F3978F 0.25 TCGA-CR-5248-01 12 132554096 132554096 G A EP400 Silent p.A2977A 0.13 TCGA-CR-5248-01 12 133420707 133420707 C T CHFR Silent p.T595T 0.18 TCGA-CR-5248-01 12 14578131 14578131 G T ATF7IP Missense_Mutation p.D428Y 0.15 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-CR-5248-01 12 14976214 14976214 C G C12orf60 Missense_Mutation p.F115L 0.25 tolerated(0.7) benign(0.041) TCGA-CR-5248-01 12 15035053 15035053 T - MGP 3'UTR 0.20 TCGA-CR-5248-01 12 26714879 26714879 T - ITPR2 Frame_Shift_Del p.N1546Ifs*19 0.12 TCGA-CR-5248-01 12 31255377 31255377 G C DDX11 Missense_Mutation p.R763T 0.22 tolerated(0.58) benign(0.145) TCGA-CR-5248-01 12 4639069 4639069 C T C12orf4 Missense_Mutation p.E158K 0.16 tolerated(0.28) possibly_damaging(0.543) TCGA-CR-5248-01 12 4719362 4719362 A - DYRK4 Frame_Shift_Del p.R355Dfs*12 0.22 TCGA-CR-5248-01 12 50189617 50189617 C T NCKAP5L Missense_Mutation p.E676K 0.40 deleterious(0.04) benign(0.294) TCGA-CR-5248-01 12 55820433 55820433 C A OR6C76 Silent p.I132I 0.16 TCGA-CR-5248-01 12 56096885 56096885 G A ITGA7 Missense_Mutation p.P95L 0.23 deleterious(0.01) probably_damaging(1) TCGA-CR-5248-01 12 56522298 56522298 G C ESYT1 Silent p.L65L 0.23 TCGA-CR-5248-01 12 58128428 58128428 G A AGAP2 Missense_Mutation p.S421L 0.25 deleterious(0) probably_damaging(0.98) TCGA-CR-5248-01 12 6309640 6309640 C T CD9 5'UTR 0.23 TCGA-CR-5248-01 12 6579803 6579803 C G VAMP1 5'UTR 0.18 TCGA-CR-5248-01 12 70963581 70963581 G A PTPRB Nonsense_Mutation p.Q1170* 0.17 TCGA-CR-5248-01 12 78574787 78574787 C G NAV3 Missense_Mutation p.S1863C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 12 8074141 8074141 G A SLC2A3 Silent p.T453T 0.21 TCGA-CR-5248-01 12 95868071 95868071 G C METAP2 Missense_Mutation p.R39T 0.19 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-CR-5248-01 12 97078851 97078851 G C C12orf55 Missense_Mutation p.R1950T 0.21 tolerated(0.19) benign(0.001) TCGA-CR-5248-01 12 99793498 99793498 C T ANKS1B Missense_Mutation p.C556Y 0.24 tolerated(1) benign(0.001) TCGA-CR-5248-01 13 20235942 20235942 G T MPHOSPH8 Missense_Mutation p.K632N 0.29 tolerated(0.06) benign(0.356) TCGA-CR-5248-01 13 25840348 25840348 G C MTMR6 Silent p.L127L 0.34 TCGA-CR-5248-01 13 25842002 25842002 C G MTMR6 Missense_Mutation p.K73N 0.26 deleterious(0) probably_damaging(0.968) TCGA-CR-5248-01 13 41517197 41517197 G A ELF1 Nonsense_Mutation p.R233* 0.26 TCGA-CR-5248-01 14 102732245 102732245 C G MOK Missense_Mutation p.E43Q 0.17 deleterious(0.02) benign(0.423) TCGA-CR-5248-01 14 102805529 102805529 G A ZNF839 Silent p.E632E 0.20 TCGA-CR-5248-01 14 102901519 102901519 G C TECPR2 Missense_Mutation p.E789Q 0.17 tolerated(0.14) benign(0.007) TCGA-CR-5248-01 14 103986510 103986510 C T CKB Missense_Mutation p.E306K 0.16 tolerated(0.25) benign(0.007) TCGA-CR-5248-01 14 104209072 104209072 C T PPP1R13B Silent p.P413P 0.11 TCGA-CR-5248-01 14 105414035 105414035 G A AHNAK2 Nonsense_Mutation p.Q2585* 0.23 TCGA-CR-5248-01 14 105518119 105518119 C T GPR132 Missense_Mutation p.A119T 0.06 deleterious(0) probably_damaging(0.964) TCGA-CR-5248-01 14 105677498 105677498 C T BRF1 Missense_Mutation p.E653K 0.22 deleterious(0.01) benign(0.126) TCGA-CR-5248-01 14 21025129 21025129 C G RNASE9 Missense_Mutation p.D39H 0.22 tolerated(0.53) benign(0.323) TCGA-CR-5248-01 14 33147558 33147558 T G AKAP6 Silent p.A924A 0.14 TCGA-CR-5248-01 14 33293569 33293569 G A AKAP6 Missense_Mutation p.E2184K 0.26 tolerated_low_confidence(0.23) benign(0.005) TCGA-CR-5248-01 14 38286810 38286810 C T TTC6 Missense_Mutation p.R1573W 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-CR-5248-01 14 50081279 50081279 G A LRR1 3'UTR 0.47 TCGA-CR-5248-01 14 50750625 50750625 C T L2HGDH Missense_Mutation p.E223K 0.25 tolerated(0.47) benign(0.008) TCGA-CR-5248-01 14 51411035 51411035 C T PYGL Silent p.K29K 0.31 TCGA-CR-5248-01 14 70991263 70991263 C G ADAM20 Missense_Mutation p.R121T 0.24 tolerated(0.08) benign(0.198) TCGA-CR-5248-01 14 70991307 70991307 C A ADAM20 Missense_Mutation p.K106N 0.24 tolerated(0.11) benign(0.033) TCGA-CR-5248-01 14 71576209 71576209 C G PCNX Missense_Mutation p.S2262C 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-CR-5248-01 14 71576247 71576247 C T PCNX Missense_Mutation p.R2275W 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-5248-01 14 72055532 72055532 G A SIPA1L1 Missense_Mutation p.D315N 0.22 deleterious(0) probably_damaging(0.969) TCGA-CR-5248-01 14 75643164 75643164 G C TMED10 Missense_Mutation p.S40C 0.05 deleterious(0.01) possibly_damaging(0.895) TCGA-CR-5248-01 14 77239553 77239553 A G VASH1 Missense_Mutation p.I177V 0.24 tolerated(0.09) benign(0.08) TCGA-CR-5248-01 14 95932570 95932570 C T SYNE3 Missense_Mutation p.E109K 0.14 deleterious(0) benign(0.253) TCGA-CR-5248-01 14 99925500 99925500 A G SETD3 Missense_Mutation p.V123A 0.12 deleterious(0) possibly_damaging(0.715) TCGA-CR-5248-01 15 100332011 100332011 C T AC090825.1 5'Flank 0.19 TCGA-CR-5248-01 15 25620732 25620732 C T UBE3A Missense_Mutation p.D84N 0.21 tolerated(0.05) benign(0.009) TCGA-CR-5248-01 15 40068622 40068622 G A FSIP1 Missense_Mutation p.S35L 0.18 deleterious(0) possibly_damaging(0.888) TCGA-CR-5248-01 15 41107889 41107889 C T PPP1R14D Missense_Mutation p.E187K 0.17 tolerated_low_confidence(0.11) benign(0.292) TCGA-CR-5248-01 15 42109197 42109197 G A MAPKBP1 Missense_Mutation p.E565K 0.06 deleterious(0) probably_damaging(0.953) TCGA-CR-5248-01 15 42678467 42678467 G A CAPN3 Missense_Mutation p.G161E 0.16 deleterious(0) probably_damaging(1) TCGA-CR-5248-01 15 43910158 43910158 G - STRC Frame_Shift_Del p.P154Lfs*30 0.11 TCGA-CR-5248-01 15 51226870 51226870 G C AP4E1 Missense_Mutation p.E307Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 15 52620057 52620057 C G MYO5A Missense_Mutation p.V1543L 0.21 deleterious(0.03) benign(0.012) TCGA-CR-5248-01 15 53809925 53809925 C A WDR72 Missense_Mutation p.A1094S 0.06 tolerated_low_confidence(0.9) benign(0.014) TCGA-CR-5248-01 15 59911580 59911580 C G GCNT3 Silent p.P381P 0.23 TCGA-CR-5248-01 15 65316055 65316055 C T MTFMT Missense_Mutation p.G166E 0.18 deleterious(0) probably_damaging(1) TCGA-CR-5248-01 15 74328500 74328500 A G PML Intron 0.11 TCGA-CR-5248-01 15 74659879 74659879 G T CYP11A1 Nonsense_Mutation p.C16* 0.13 TCGA-CR-5248-01 15 81241135 81241135 C T KIAA1199 Intron 0.05 TCGA-CR-5248-01 15 89802003 89802003 C T FANCI Silent p.F51F 0.13 TCGA-CR-5248-01 15 90135363 90135363 C G TICRR Missense_Mutation p.F499L 0.06 tolerated(0.57) benign(0.016) TCGA-CR-5248-01 15 94899262 94899262 T - MCTP2 Intron 0.32 TCGA-CR-5248-01 15 99903443 99903443 A T LRRC28 Missense_Mutation p.E335V 0.08 deleterious(0.01) possibly_damaging(0.762) TCGA-CR-5248-01 16 11370049 11370049 C T PRM2 Missense_Mutation p.R60Q 0.25 tolerated_low_confidence(0.26) unknown(0) TCGA-CR-5248-01 16 16255391 16255391 C T ABCC6 Silent p.G1179G 0.12 TCGA-CR-5248-01 16 23706160 23706160 G A ERN2 Silent p.L711L 0.23 TCGA-CR-5248-01 16 27480793 27480793 C G GTF3C1 Silent p.R1631R 0.22 TCGA-CR-5248-01 16 30794731 30794731 G A ZNF629 Silent p.L306L 0.15 TCGA-CR-5248-01 16 3452340 3452340 G C ZNF174 Missense_Mutation p.M112I 0.24 tolerated(0.16) benign(0.032) TCGA-CR-5248-01 16 4776977 4776977 C A ANKS3 Intron 0.15 TCGA-CR-5248-01 16 58577583 58577583 C A CNOT1 Missense_Mutation p.M1454I 0.28 deleterious(0.02) possibly_damaging(0.643) TCGA-CR-5248-01 16 597026 597026 C T CAPN15 Missense_Mutation p.A63V 0.13 tolerated_low_confidence(0.14) benign(0.22) TCGA-CR-5248-01 16 68712542 68712542 G T CDH3 Nonsense_Mutation p.E177* 0.16 TCGA-CR-5248-01 16 68877575 68877575 C T TANGO6 Missense_Mutation p.R19W 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.53) TCGA-CR-5248-01 16 75269553 75269553 G - BCAR1 Frame_Shift_Del p.P461Qfs*56 0.18 TCGA-CR-5248-01 16 87866432 87866432 C G SLC7A5 3'UTR 0.28 TCGA-CR-5248-01 16 88665043 88665043 G A ZC3H18 Missense_Mutation p.D285N 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-CR-5248-01 16 89352507 89352508 - G ANKRD11 Frame_Shift_Ins p.T278Hfs*71 0.20 TCGA-CR-5248-01 17 11584154 11584154 G C DNAH9 Missense_Mutation p.D1231H 0.27 benign(0.01) TCGA-CR-5248-01 17 17399349 17399349 G A RASD1 Silent p.F49F 0.24 TCGA-CR-5248-01 17 26711532 26711532 G A SARM1 Missense_Mutation p.E382K 0.19 deleterious(0.01) benign(0.06) TCGA-CR-5248-01 17 26711577 26711577 G A SARM1 Missense_Mutation p.E397K 0.28 tolerated(0.13) benign(0.239) TCGA-CR-5248-01 17 30349151 30349151 C G LRRC37B Missense_Mutation p.P329R 0.21 deleterious(0.01) benign(0.282) TCGA-CR-5248-01 17 33738501 33738501 C T SLFN12 Silent p.L531L 0.19 TCGA-CR-5248-01 17 36486166 36486166 G - GPR179 Frame_Shift_Del p.R1096Vfs*37 0.20 TCGA-CR-5248-01 17 38066128 38066128 C G GSDMB Missense_Mutation p.E153Q 0.25 deleterious(0.04) possibly_damaging(0.73) TCGA-CR-5248-01 17 4843164 4843164 C A SLC25A11 Silent p.G14G 0.13 TCGA-CR-5248-01 17 530477 530477 C T VPS53 Missense_Mutation p.R304H 0.26 tolerated(0.14) benign(0.013) TCGA-CR-5248-01 17 5323530 5323530 G A RPAIN 5'UTR 0.13 TCGA-CR-5248-01 17 54912414 54912414 C G DGKE Missense_Mutation p.F86L 0.22 tolerated(0.2) benign(0.438) TCGA-CR-5248-01 17 55075841 55075841 G T SCPEP1 Nonsense_Mutation p.E326* 0.28 TCGA-CR-5248-01 17 56276417 56276417 G A EPX Silent p.T379T 0.23 TCGA-CR-5248-01 17 56403660 56403660 C T BZRAP1 Silent p.L188L 0.32 TCGA-CR-5248-01 17 59885908 59885908 C T BRIP1 Missense_Mutation p.D280N 0.18 deleterious(0) probably_damaging(0.952) TCGA-CR-5248-01 17 61987021 61987021 C T CSHL1 3'Flank 0.34 TCGA-CR-5248-01 17 66417878 66417879 - G WIPI1 3'UTR 0.21 TCGA-CR-5248-01 17 72860147 72860147 C G FDXR Missense_Mutation p.E392Q 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-CR-5248-01 17 7330298 7330298 C T C17orf74 Missense_Mutation p.R330W 0.33 deleterious(0.01) probably_damaging(0.942) TCGA-CR-5248-01 17 74077661 74077661 C T ZACN Silent p.I235I 0.23 TCGA-CR-5248-01 17 7495075 7495075 C G FXR2 3'UTR 0.31 TCGA-CR-5248-01 18 12814324 12814325 - T PTPN2 Frame_Shift_Ins p.Q246Tfs*39 0.18 TCGA-CR-5248-01 18 22805237 22805237 G C ZNF521 Missense_Mutation p.S882C 0.20 deleterious(0) probably_damaging(0.957) TCGA-CR-5248-01 18 2578095 2578096 AC - NDC80 Frame_Shift_Del p.T145Kfs*3 0.19 TCGA-CR-5248-01 18 31320039 31320039 G A ASXL3 Missense_Mutation p.D891N 0.15 benign(0.03) TCGA-CR-5248-01 18 32954025 32954025 G A ZNF396 Missense_Mutation p.H78Y 0.15 tolerated(0.28) possibly_damaging(0.607) TCGA-CR-5248-01 18 32954307 32954307 G A ZNF396 5'UTR 0.20 TCGA-CR-5248-01 18 42531993 42531993 C T SETBP1 Silent p.F896F 0.31 TCGA-CR-5248-01 18 70526106 70526106 C G NETO1 Missense_Mutation p.E142Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CR-5248-01 18 77170523 77170523 C T NFATC1 Missense_Mutation p.A70V 0.13 tolerated(0.17) benign(0.003) TCGA-CR-5248-01 19 16314374 16314374 C T AP1M1 Silent p.I49I 0.31 TCGA-CR-5248-01 19 1800407 1800407 G A ATP8B3 Silent p.F398F 0.23 TCGA-CR-5248-01 19 20002713 20002713 G A ZNF253 Silent p.K219K 0.22 TCGA-CR-5248-01 19 30934667 30934667 G A ZNF536 Silent p.E66E 0.22 TCGA-CR-5248-01 19 36018688 36018688 C A SBSN Nonsense_Mutation p.E166* 0.11 TCGA-CR-5248-01 19 362174 362174 G C THEG 3'UTR 0.07 TCGA-CR-5248-01 19 38102931 38102931 G C ZNF540 Missense_Mutation p.K250N 0.17 deleterious(0.01) probably_damaging(0.924) TCGA-CR-5248-01 19 38188883 38188883 A G ZNF607 3'UTR 0.22 TCGA-CR-5248-01 19 40376432 40376432 G C FCGBP Missense_Mutation p.L3958V 0.15 possibly_damaging(0.694) TCGA-CR-5248-01 19 40889957 40889957 C G HIPK4 Missense_Mutation p.E185D 0.21 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 19 42482830 42482830 G A ATP1A3 Silent p.L533L 0.17 TCGA-CR-5248-01 19 44590114 44590114 C A ZNF284 Silent p.I161I 0.25 TCGA-CR-5248-01 19 45391518 45391518 A G PVRL2 Missense_Mutation p.E500G 0.18 deleterious_low_confidence(0.02) benign(0.275) TCGA-CR-5248-01 19 4554425 4554425 G A SEMA6B Missense_Mutation p.A249V 0.14 deleterious(0.01) possibly_damaging(0.761) TCGA-CR-5248-01 19 47290911 47290911 G C SLC1A5 Missense_Mutation p.I104M 0.24 deleterious(0) probably_damaging(1) TCGA-CR-5248-01 19 48981790 48981790 G T CYTH2 Missense_Mutation p.M351I 0.13 tolerated(0.15) benign(0) TCGA-CR-5248-01 19 50208329 50208329 C T CPT1C Silent p.L279L 0.23 TCGA-CR-5248-01 19 50549839 50549839 G C ZNF473 Missense_Mutation p.Q713H 0.13 tolerated(0.11) possibly_damaging(0.558) TCGA-CR-5248-01 19 50951529 50951529 G A MYBPC2 Missense_Mutation p.A452T 0.09 deleterious(0.05) possibly_damaging(0.85) TCGA-CR-5248-01 19 51325150 51325150 G C KLK1 Intron 0.19 TCGA-CR-5248-01 19 52090088 52090088 C A ZNF175 Missense_Mutation p.N168K 0.26 tolerated(0.3) benign(0.001) TCGA-CR-5248-01 19 54308652 54308652 G C NLRP12 Missense_Mutation p.L766V 0.11 deleterious(0.02) benign(0.176) TCGA-CR-5248-01 19 54496185 54496185 G A CACNG6 Silent p.A18A 0.17 TCGA-CR-5248-01 19 55593493 55593493 C T EPS8L1 Missense_Mutation p.S312L 0.54 tolerated(0.06) benign(0.006) TCGA-CR-5248-01 19 57840200 57840200 G C ZNF543 Missense_Mutation p.G457A 0.21 deleterious(0.03) probably_damaging(0.985) TCGA-CR-5248-01 19 579570 579570 C T BSG Silent p.S162S 0.26 TCGA-CR-5248-01 19 58991811 58991811 G A ZNF446 Silent p.G357G 0.21 TCGA-CR-5248-01 19 603773 603773 C T HCN2 Missense_Mutation p.R288C 0.10 deleterious(0.05) benign(0.22) TCGA-CR-5248-01 19 6389547 6389547 C A GTF2F1 Missense_Mutation p.E78D 0.17 deleterious(0.02) possibly_damaging(0.476) TCGA-CR-5248-01 19 6467445 6467445 A - DENND1C 3'UTR 0.22 TCGA-CR-5248-01 19 7912766 7912766 G A EVI5L Missense_Mutation p.E96K 0.36 deleterious(0.01) benign(0.231) TCGA-CR-5248-01 19 8399298 8399298 G T KANK3 Missense_Mutation p.L445I 0.08 deleterious(0) probably_damaging(0.99) TCGA-CR-5248-01 19 9237045 9237045 G A OR7G3 Silent p.I194I 0.24 TCGA-CR-5248-01 1 110754320 110754320 G A KCNC4 Missense_Mutation p.D67N 0.20 deleterious(0.01) probably_damaging(0.916) TCGA-CR-5248-01 1 112524371 112524371 G A KCND3 Silent p.F326F 0.14 TCGA-CR-5248-01 1 114442908 114442908 G C AP4B1 Silent p.L244L 0.08 TCGA-CR-5248-01 1 118166279 118166279 C G FAM46C Missense_Mutation p.I263M 0.26 tolerated(0.23) possibly_damaging(0.776) TCGA-CR-5248-01 1 1341194 1341194 C G MRPL20 Missense_Mutation p.V91L 0.23 tolerated(0.73) benign(0.002) TCGA-CR-5248-01 1 144952223 144952223 C T PDE4DIP Missense_Mutation p.E166K 0.08 tolerated(0.52) possibly_damaging(0.562) TCGA-CR-5248-01 1 150437148 150437148 G C RPRD2 Missense_Mutation p.E519D 0.21 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-CR-5248-01 1 150636160 150636160 C T GOLPH3L Missense_Mutation p.R88Q 0.27 deleterious(0) probably_damaging(0.994) TCGA-CR-5248-01 1 152277823 152277823 G A FLG Missense_Mutation p.S3180L 0.41 unknown(0) TCGA-CR-5248-01 1 152279302 152279302 T G FLG Missense_Mutation p.Y2687S 0.12 benign(0) TCGA-CR-5248-01 1 152327870 152327870 C T FLG2 Missense_Mutation p.G798R 0.09 unknown(0) TCGA-CR-5248-01 1 155238104 155238104 T C CLK2 Silent p.V177V 0.21 TCGA-CR-5248-01 1 155292421 155292421 C G RUSC1 Missense_Mutation p.S286C 0.25 deleterious_low_confidence(0) benign(0.401) TCGA-CR-5248-01 1 155699156 155699156 C G DAP3 Missense_Mutation p.P281R 0.23 tolerated(0.34) benign(0.115) TCGA-CR-5248-01 1 161200778 161200778 G C NR1I3 Intron 0.16 TCGA-CR-5248-01 1 161200834 161200834 G A NR1I3 Intron 0.18 TCGA-CR-5248-01 1 161494658 161494658 C G HSPA6 Missense_Mutation p.F70L 0.22 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-CR-5248-01 1 16261424 16261424 C G SPEN Missense_Mutation p.P2897A 0.17 possibly_damaging(0.812) TCGA-CR-5248-01 1 166819358 166819358 G C POGK Silent p.L514L 0.22 TCGA-CR-5248-01 1 172633495 172633495 A - FASLG Frame_Shift_Del p.K141Rfs*3 0.11 TCGA-CR-5248-01 1 175046766 175046766 C T TNN Missense_Mutation p.S71L 0.20 tolerated(0.09) benign(0.002) TCGA-CR-5248-01 1 184006371 184006371 C T COLGALT2 Missense_Mutation p.E41K 0.22 tolerated_low_confidence(0.07) benign(0.01) TCGA-CR-5248-01 1 19439425 19439425 G C UBR4 Intron 0.29 TCGA-CR-5248-01 1 19451151 19451151 G C UBR4 Missense_Mutation p.Q3158E 0.15 probably_damaging(0.966) TCGA-CR-5248-01 1 19453067 19453067 G C UBR4 Nonsense_Mutation p.S3104* 0.24 TCGA-CR-5248-01 1 196309572 196309572 G T KCNT2 Nonsense_Mutation p.S561* 0.17 TCGA-CR-5248-01 1 19992627 19992627 C G HTR6 Silent p.L127L 0.07 TCGA-CR-5248-01 1 202245595 202245595 G A LGR6 Missense_Mutation p.R197H 0.21 tolerated(0.33) benign(0.013) TCGA-CR-5248-01 1 209849324 209849324 C T G0S2 Missense_Mutation p.R99W 0.21 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 1 229567103 229567103 C G ACTA1 3'UTR 0.18 TCGA-CR-5248-01 1 25153552 25153552 C T CLIC4 Silent p.D120D 0.09 TCGA-CR-5248-01 1 35917293 35917293 G T KIAA0319L Silent p.T666T 0.26 TCGA-CR-5248-01 1 36291379 36291379 G T AGO4 Silent p.V196V 0.23 TCGA-CR-5248-01 1 36474571 36474571 C G AGO3 Missense_Mutation p.L319V 0.12 tolerated(0.15) benign(0.196) TCGA-CR-5248-01 1 3697554 3697555 - A LRRC47 3'UTR 0.20 TCGA-CR-5248-01 1 39340782 39340782 G C GJA9 Missense_Mutation p.S330C 0.30 tolerated(0.07) possibly_damaging(0.75) TCGA-CR-5248-01 1 39908391 39908391 A - MACF1 Frame_Shift_Del p.N4313Mfs*32 0.13 TCGA-CR-5248-01 1 40433512 40433512 G A MFSD2A Missense_Mutation p.E391K 0.13 tolerated(0.36) benign(0.009) TCGA-CR-5248-01 1 40928626 40928626 C T ZFP69B Missense_Mutation p.P324S 0.15 tolerated(0.74) benign(0.284) TCGA-CR-5248-01 1 43778211 43778211 C G TIE1 Silent p.L622L 0.05 TCGA-CR-5248-01 1 45671764 45671764 C G ZSWIM5 Missense_Mutation p.E87Q 0.21 tolerated(0.44) probably_damaging(0.996) TCGA-CR-5248-01 1 53153466 53153466 C T COA7 Missense_Mutation p.E208K 0.24 deleterious(0.04) benign(0.417) TCGA-CR-5248-01 1 7913473 7913473 G T UTS2 Missense_Mutation p.H7N 0.13 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-CR-5248-01 1 85127939 85127939 G A SSX2IP Missense_Mutation p.S290F 0.09 tolerated(0.14) possibly_damaging(0.861) TCGA-CR-5248-01 1 94512578 94512578 C G ABCA4 Missense_Mutation p.E939Q 0.06 tolerated(0.24) benign(0.16) TCGA-CR-5248-01 1 94955518 94955518 G C ABCD3 Missense_Mutation p.D437H 0.13 deleterious(0) probably_damaging(0.966) TCGA-CR-5248-01 20 14307152 14307152 C T FLRT3 Missense_Mutation p.C334Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 20 31385005 31385005 G C DNMT3B Missense_Mutation p.E464Q 0.17 deleterious(0) probably_damaging(0.925) TCGA-CR-5248-01 20 35696531 35696531 C G RBL1 Missense_Mutation p.E117Q 0.32 tolerated(0.13) probably_damaging(0.978) TCGA-CR-5248-01 20 45354422 45354422 C T SLC2A10 Silent p.N249N 0.24 TCGA-CR-5248-01 20 60897442 60897442 C T LAMA5 Missense_Mutation p.E2077K 0.24 benign(0.062) TCGA-CR-5248-01 20 61915227 61915227 G A ARFGAP1 Missense_Mutation p.E248K 0.18 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-CR-5248-01 20 62153084 62153084 C T PPDPF Missense_Mutation p.P66L 0.26 tolerated(0.08) benign(0.312) TCGA-CR-5248-01 20 62597952 62597952 G A ZNF512B Silent p.I192I 0.29 TCGA-CR-5248-01 21 31852536 31852536 C T KRTAP19-1 Missense_Mutation p.R34K 0.25 tolerated_low_confidence(0.12) unknown(0) TCGA-CR-5248-01 21 38520891 38520891 C G TTC3 Missense_Mutation p.H688D 0.22 deleterious(0) possibly_damaging(0.901) TCGA-CR-5248-01 21 38862551 38862551 G A DYRK1A Missense_Mutation p.D247N 0.21 deleterious(0) probably_damaging(0.997) TCGA-CR-5248-01 21 40193623 40193623 G A ETS2 Missense_Mutation p.D397N 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-CR-5248-01 21 43165984 43165984 C T RIPK4 Missense_Mutation p.D291N 0.31 tolerated(0.16) benign(0.005) TCGA-CR-5248-01 21 46320373 46320373 G A ITGB2 Silent p.R253R 0.18 TCGA-CR-5248-01 21 46841478 46841478 C T COL18A1-AS1 RNA 0.32 TCGA-CR-5248-01 21 47536580 47536580 G A COL6A2 Missense_Mutation p.D315N 0.27 tolerated(0.24) benign(0.39) TCGA-CR-5248-01 22 21134215 21134215 G A SERPIND1 Silent p.L205L 0.19 TCGA-CR-5248-01 22 21800507 21800507 G C HIC2 Missense_Mutation p.L441F 0.14 deleterious(0.03) possibly_damaging(0.86) TCGA-CR-5248-01 22 29706633 29706633 G C GAS2L1 Silent p.L249L 0.20 TCGA-CR-5248-01 22 31333850 31333850 G A MORC2 Nonsense_Mutation p.R379* 0.16 TCGA-CR-5248-01 22 31654293 31654293 G A LIMK2 Missense_Mutation p.D24N 0.18 tolerated(0.48) possibly_damaging(0.449) TCGA-CR-5248-01 22 31654368 31654368 G A LIMK2 Missense_Mutation p.E49K 0.22 deleterious(0) possibly_damaging(0.566) TCGA-CR-5248-01 22 32808231 32808231 G A RTCB 5'UTR 0.15 TCGA-CR-5248-01 22 36960607 36960607 C T CACNG2 Missense_Mutation p.V255M 0.25 deleterious(0.04) benign(0.009) TCGA-CR-5248-01 22 38437089 38437089 G A RP5-1039K5.18 5'Flank 0.19 TCGA-CR-5248-01 22 50500060 50500060 G A MLC1 Silent p.F362F 0.16 TCGA-CR-5248-01 22 50927676 50927676 C T MIOX Nonsense_Mutation p.Q180* 0.17 TCGA-CR-5248-01 2 100625336 100625344 CTTGATTTC TTGTTTTT AFF3 Frame_Shift_Del p.R60Kfs*39 0.18 TCGA-CR-5248-01 2 10917766 10917766 T C ATP6V1C2 Missense_Mutation p.V294A 0.23 tolerated_low_confidence(0.23) benign(0.015) TCGA-CR-5248-01 2 130877784 130877784 C T POTEF Missense_Mutation p.C102Y 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.53) TCGA-CR-5248-01 2 142004806 142004806 T C LRP1B Missense_Mutation p.K194R 0.11 benign(0.292) TCGA-CR-5248-01 2 160104982 160104982 C T WDSUB1 Missense_Mutation p.E392K 0.11 tolerated(0.14) benign(0.059) TCGA-CR-5248-01 2 163123678 163123678 G A IFIH1 3'UTR 0.26 TCGA-CR-5248-01 2 163253401 163253401 G C KCNH7 Missense_Mutation p.S821C 0.30 deleterious(0.02) possibly_damaging(0.824) TCGA-CR-5248-01 2 165986604 165986604 C T SCN3A Missense_Mutation p.R923Q 0.19 deleterious(0) possibly_damaging(0.749) TCGA-CR-5248-01 2 176996323 176996323 G A HOXD8 Missense_Mutation p.E286K 0.29 deleterious_low_confidence(0.04) benign(0.124) TCGA-CR-5248-01 2 179403892 179403892 C T TTN Missense_Mutation p.D32924N 0.21 TCGA-CR-5248-01 2 179554565 179554565 C G TTN Missense_Mutation p.K10607N 0.05 TCGA-CR-5248-01 2 179612368 179612368 G C TTN Intron 0.11 TCGA-CR-5248-01 2 198950579 198950579 G A PLCL1 Missense_Mutation p.E780K 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 2 203397344 203397344 G C BMPR2 Missense_Mutation p.E389Q 0.14 deleterious(0.04) probably_damaging(0.98) TCGA-CR-5248-01 2 21231537 21231537 C G APOB Missense_Mutation p.D2735H 0.16 probably_damaging(0.998) TCGA-CR-5248-01 2 220098917 220098917 G C ANKZF1 Missense_Mutation p.E371Q 0.26 tolerated(0.53) benign(0.007) TCGA-CR-5248-01 2 220098992 220098992 G A ANKZF1 Missense_Mutation p.E396K 0.27 tolerated(0.29) benign(0.004) TCGA-CR-5248-01 2 220408002 220408002 G A CHPF Missense_Mutation p.R87C 0.16 deleterious(0) benign(0.285) TCGA-CR-5248-01 2 220408070 220408070 G A CHPF Missense_Mutation p.S64L 0.27 deleterious(0.01) benign(0.069) TCGA-CR-5248-01 2 222428965 222428965 G A EPHA4 Silent p.F103F 0.17 TCGA-CR-5248-01 2 231774833 231774833 C T GPR55 Missense_Mutation p.C282Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 2 232262649 232262649 C T B3GNT7 Silent p.P73P 0.22 TCGA-CR-5248-01 2 233164768 233164768 C G DIS3L2 Missense_Mutation p.L560V 0.17 deleterious(0.02) possibly_damaging(0.859) TCGA-CR-5248-01 2 28531146 28531146 C G BRE Intron 0.36 TCGA-CR-5248-01 2 39997221 39997221 C T THUMPD2 Missense_Mutation p.D101N 0.14 tolerated(0.12) benign(0.1) TCGA-CR-5248-01 2 39997224 39997224 C T THUMPD2 Missense_Mutation p.E100K 0.14 deleterious(0.03) benign(0.169) TCGA-CR-5248-01 2 43451806 43451806 C T ZFP36L2 Silent p.Q379Q 0.27 TCGA-CR-5248-01 2 46986960 46986960 G C SOCS5 Missense_Mutation p.E431Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-CR-5248-01 2 48035111 48035111 G C FBXO11 3'UTR 0.19 TCGA-CR-5248-01 2 48687279 48687279 C T PPP1R21 Nonsense_Mutation p.R196* 0.33 TCGA-CR-5248-01 2 50765639 50765639 C A NRXN1 Missense_Mutation p.W672L 0.07 deleterious(0) probably_damaging(1) TCGA-CR-5248-01 2 55792169 55792169 G C SMEK2 Missense_Mutation p.I648M 0.18 deleterious(0) benign(0.297) TCGA-CR-5248-01 2 55806911 55806911 C T SMEK2 Missense_Mutation p.E458K 0.29 deleterious(0.01) possibly_damaging(0.581) TCGA-CR-5248-01 2 68805097 68805097 G C APLF Missense_Mutation p.E493D 0.19 tolerated(0.51) benign(0.036) TCGA-CR-5248-01 2 71211740 71211740 G C ANKRD53 Splice_Site p.X302_splice 0.06 TCGA-CR-5248-01 2 71360440 71360440 G A MPHOSPH10 Missense_Mutation p.D168N 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-CR-5248-01 3 101373663 101373663 C A ZBTB11 Nonsense_Mutation p.E732* 0.08 TCGA-CR-5248-01 3 141622545 141622545 C G ATP1B3 Missense_Mutation p.L65V 0.10 tolerated(0.09) probably_damaging(1) TCGA-CR-5248-01 3 148858878 148858878 G T HPS3 Nonsense_Mutation p.E263* 0.14 TCGA-CR-5248-01 3 151154852 151154852 A G IGSF10 Silent p.Y2499Y 0.04 TCGA-CR-5248-01 3 156763471 156763471 G T LEKR1 Missense_Mutation p.A671S 0.15 tolerated(0.14) possibly_damaging(0.567) TCGA-CR-5248-01 3 157146231 157146231 C T VEPH1 Silent p.Q192Q 0.24 TCGA-CR-5248-01 3 164908029 164908029 G C SLITRK3 Missense_Mutation p.S197C 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-CR-5248-01 3 183861986 183861986 G A EIF2B5 Missense_Mutation p.E657K 0.15 tolerated(0.13) benign(0.015) TCGA-CR-5248-01 3 184060556 184060556 C T FAM131A Missense_Mutation p.A178V 0.23 deleterious(0) probably_damaging(0.972) TCGA-CR-5248-01 3 185867846 185867846 C T DGKG 3'UTR 0.20 TCGA-CR-5248-01 3 188327198 188327198 T G LPP Missense_Mutation p.S227A 0.10 tolerated(0.39) benign(0.114) TCGA-CR-5248-01 3 194063020 194063020 C G CPN2 Missense_Mutation p.E138Q 0.05 tolerated(0.23) benign(0.268) TCGA-CR-5248-01 3 25634998 25634998 T G RARB Missense_Mutation p.L264R 0.34 deleterious(0) probably_damaging(0.999) TCGA-CR-5248-01 3 37367779 37367779 G C GOLGA4 Missense_Mutation p.E1490Q 0.08 probably_damaging(0.92) TCGA-CR-5248-01 3 46620773 46620773 G C TDGF1 Missense_Mutation p.R47T 0.17 tolerated(0.27) benign(0.066) TCGA-CR-5248-01 3 49948247 49948247 C T MON1A Silent p.S325S 0.27 TCGA-CR-5248-01 3 50645484 50645484 G A CISH Missense_Mutation p.H128Y 0.26 deleterious(0) probably_damaging(1) TCGA-CR-5248-01 3 52454998 52454998 G A PHF7 Missense_Mutation p.E165K 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-CR-5248-01 3 97983934 97983934 G A OR5H6 Missense_Mutation p.G269D 0.21 deleterious(0) probably_damaging(0.996) TCGA-CR-5248-01 4 114195732 114195732 C T ANK2 Missense_Mutation p.S537F 0.36 probably_damaging(0.991) TCGA-CR-5248-01 4 177041161 177041161 G T WDR17 Missense_Mutation p.D175Y 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CR-5248-01 4 20530585 20530585 T C SLIT2 Silent p.Y492Y 0.20 TCGA-CR-5248-01 4 25792177 25792177 C G SEL1L3 Missense_Mutation p.R659T 0.24 tolerated(0.06) possibly_damaging(0.69) TCGA-CR-5248-01 4 48608509 48608509 A - FRYL Frame_Shift_Del p.R230Efs*2 0.21 TCGA-CR-5248-01 4 52861239 52861239 G A LRRC66 Missense_Mutation p.S650L 0.28 tolerated(0.21) benign(0.01) TCGA-CR-5248-01 4 56301653 56301653 G A CLOCK Nonsense_Mutation p.Q824* 0.29 TCGA-CR-5248-01 4 65274945 65274945 G A TECRL Missense_Mutation p.S42L 0.22 deleterious_low_confidence(0) benign(0.293) TCGA-CR-5248-01 4 728799 728799 C - PCGF3 Frame_Shift_Del p.L65Cfs*26 0.28 TCGA-CR-5248-01 4 91230678 91230678 G C CCSER1 Missense_Mutation p.D415H 0.40 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-CR-5248-01 4 95155231 95155231 G C SMARCAD1 Missense_Mutation p.L165F 0.30 deleterious(0.01) possibly_damaging(0.643) TCGA-CR-5248-01 5 131530707 131530707 A C P4HA2 Silent p.A483A 0.27 TCGA-CR-5248-01 5 137680625 137680625 G A FAM53C Missense_Mutation p.R83Q 0.19 tolerated(0.8) benign(0.021) TCGA-CR-5248-01 5 13871062 13871062 G A DNAH5 Silent p.V1216V 0.17 TCGA-CR-5248-01 5 140209601 140209601 C G PCDHA6 Missense_Mutation p.S642C 0.28 deleterious_low_confidence(0) benign(0.18) TCGA-CR-5248-01 5 14291310 14291310 G A TRIO Silent p.L342L 0.24 TCGA-CR-5248-01 5 148930592 148930592 C T CSNK1A1 5'Flank 0.19 TCGA-CR-5248-01 5 171516 171516 A G PLEKHG4B Missense_Mutation p.H980R 0.11 deleterious(0.05) benign(0.078) TCGA-CR-5248-01 5 34033476 34033476 C G C1QTNF3 Missense_Mutation p.R168P 0.24 tolerated(0.08) possibly_damaging(0.524) TCGA-CR-5248-01 5 6605463 6605463 C T NSUN2 Missense_Mutation p.E554K 0.12 tolerated(0.08) possibly_damaging(0.576) TCGA-CR-5248-01 5 67576368 67576368 C G PIK3R1 Missense_Mutation p.S216C 0.17 tolerated(0.05) benign(0.186) TCGA-CR-5248-01 5 71654230 71654230 C G PTCD2 Silent p.L381L 0.23 TCGA-CR-5248-01 5 79355723 79355723 G A THBS4 Missense_Mutation p.D328N 0.28 tolerated(0.43) probably_damaging(0.996) TCGA-CR-5248-01 5 801245 801245 C T ZDHHC11 Missense_Mutation p.D406N 0.09 tolerated_low_confidence(0.59) possibly_damaging(0.539) TCGA-CR-5248-01 5 96130758 96130758 G A ERAP1 Silent p.P302P 0.15 TCGA-CR-5248-01 6 119252640 119252640 G A MCM9 Silent p.S83S 0.19 TCGA-CR-5248-01 6 129687405 129687405 G T LAMA2 Missense_Mutation p.A1587S 0.23 deleterious(0.01) benign(0.024) TCGA-CR-5248-01 6 13487002 13487002 C A GFOD1 Nonsense_Mutation p.E41* 0.23 TCGA-CR-5248-01 6 137019686 137019686 G A MAP3K5 Silent p.I249I 0.19 TCGA-CR-5248-01 6 143081778 143081778 C T HIVEP2 Missense_Mutation p.A1883T 0.21 tolerated(0.36) benign(0.005) TCGA-CR-5248-01 6 148865685 148865685 G A SASH1 Missense_Mutation p.A1027T 0.11 tolerated_low_confidence(0.43) benign(0.026) TCGA-CR-5248-01 6 151686993 151686993 T C ZBTB2 Missense_Mutation p.N403S 0.26 tolerated(0.17) probably_damaging(0.956) TCGA-CR-5248-01 6 168226205 168226205 G A MLLT4 5'Flank 0.27 TCGA-CR-5248-01 6 24718957 24718957 C G C6orf62 5'UTR 0.16 TCGA-CR-5248-01 6 26104378 26104378 G C HIST1H4C Missense_Mutation p.R68P 0.17 deleterious(0) possibly_damaging(0.522) TCGA-CR-5248-01 6 26234751 26234751 C A HIST1H1D Missense_Mutation p.K137N 0.20 tolerated(0.12) unknown(0) TCGA-CR-5248-01 6 31867996 31867996 G A ZBTB12 Missense_Mutation p.R363C 0.24 deleterious(0.03) possibly_damaging(0.898) TCGA-CR-5248-01 6 31868111 31868111 G C ZBTB12 Missense_Mutation p.F324L 0.16 tolerated(0.71) benign(0.153) TCGA-CR-5248-01 6 36106833 36106833 G A MAPK13 Splice_Site p.X340_splice 0.17 TCGA-CR-5248-01 6 39330286 39330286 C T KIF6 Missense_Mutation p.E624K 0.16 tolerated(0.38) benign(0.15) TCGA-CR-5248-01 6 41126780 41126780 G A TREM2 Silent p.P169P 0.29 TCGA-CR-5248-01 6 43481162 43481162 G A YIPF3 Missense_Mutation p.L157F 0.11 deleterious(0.02) probably_damaging(0.934) TCGA-CR-5248-01 6 50803961 50803961 C T TFAP2B Silent p.L263L 0.20 TCGA-CR-5248-01 6 56437028 56437028 G C DST Missense_Mutation p.L1908V 0.29 benign(0.305) TCGA-CR-5248-01 6 57012646 57012646 C T ZNF451 Missense_Mutation p.S588L 0.19 tolerated(0.14) probably_damaging(0.997) TCGA-CR-5248-01 6 70411789 70411789 G A LMBRD1 Silent p.F324F 0.20 TCGA-CR-5248-01 6 70423682 70423682 T C LMBRD1 Missense_Mutation p.D257G 0.23 tolerated(0.18) benign(0.077) TCGA-CR-5248-01 6 81053418 81053418 G C BCKDHB Missense_Mutation p.R359T 0.10 deleterious(0) probably_damaging(0.988) TCGA-CR-5248-01 7 100678577 100678577 G A MUC17 Missense_Mutation p.E1294K 0.20 unknown(0) TCGA-CR-5248-01 7 100856120 100856120 C T PLOD3 Intron 0.34 TCGA-CR-5248-01 7 103137182 103137182 T C RELN Missense_Mutation p.Y2995C 0.18 deleterious(0) possibly_damaging(0.823) TCGA-CR-5248-01 7 112424433 112424433 G A TMEM168 Missense_Mutation p.R150W 0.10 deleterious(0) probably_damaging(0.968) TCGA-CR-5248-01 7 121960197 121960197 C T CADPS2 3'UTR 0.24 TCGA-CR-5248-01 7 121960236 121960236 C T CADPS2 Missense_Mutation p.E1292K 0.20 deleterious_low_confidence(0.02) benign(0.386) TCGA-CR-5248-01 7 127222320 127222320 G A GCC1 Silent p.G692G 0.20 TCGA-CR-5248-01 7 128485033 128485033 G A FLNC Missense_Mutation p.E1172K 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-CR-5248-01 7 134916760 134916760 C G STRA8 Silent p.L10L 0.18 TCGA-CR-5248-01 7 141952098 141952098 G T PRSS58 Silent p.I223I 0.22 TCGA-CR-5248-01 7 142637734 142637734 C T C7orf34 3'UTR 0.21 TCGA-CR-5248-01 7 144245667 144245667 C T TPK1 Missense_Mutation p.G177E 0.24 tolerated(0.1) possibly_damaging(0.512) TCGA-CR-5248-01 7 150920888 150920888 C T ABCF2 Missense_Mutation p.D200N 0.38 deleterious(0.01) benign(0.104) TCGA-CR-5248-01 7 151716792 151716792 G A GALNTL5 Missense_Mutation p.R413H 0.10 deleterious(0.02) benign(0.28) TCGA-CR-5248-01 7 1785470 1785470 C G ELFN1 Missense_Mutation p.S413C 0.25 deleterious(0) probably_damaging(0.947) TCGA-CR-5248-01 7 25218826 25218826 C G C7orf31 Missense_Mutation p.Q34H 0.23 deleterious(0.01) possibly_damaging(0.568) TCGA-CR-5248-01 7 26224729 26224729 G T NFE2L3 Nonsense_Mutation p.E471* 0.21 TCGA-CR-5248-01 7 34101656 34101656 G A BMPER Missense_Mutation p.E359K 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-CR-5248-01 7 36677476 36677476 A T AOAH Missense_Mutation p.V144D 0.18 deleterious(0.01) possibly_damaging(0.643) TCGA-CR-5248-01 7 5232766 5232766 C G WIPI2 Nonsense_Mutation p.S31* 0.08 TCGA-CR-5248-01 7 6086667 6086667 C G EIF2AK1 Missense_Mutation p.E169Q 0.25 deleterious(0) probably_damaging(0.986) TCGA-CR-5248-01 7 73666756 73666756 C G RFC2 Intron 0.10 TCGA-CR-5248-01 7 87069132 87069132 C T ABCB4 Missense_Mutation p.E528K 0.25 deleterious(0.01) possibly_damaging(0.897) TCGA-CR-5248-01 7 88956698 88956698 T C ZNF804B Missense_Mutation p.V97A 0.12 deleterious(0) probably_damaging(0.994) TCGA-CR-5248-01 7 99696975 99696975 C T MCM7 Missense_Mutation p.E110K 0.17 tolerated(0.1) possibly_damaging(0.589) TCGA-CR-5248-01 8 101287254 101287254 C G RNF19A Missense_Mutation p.E270D 0.13 deleterious(0.02) benign(0.055) TCGA-CR-5248-01 8 143784490 143784490 G T LY6K Intron 0.31 TCGA-CR-5248-01 8 144942096 144942096 C T EPPK1 Missense_Mutation p.V1776M 0.08 benign(0.002) TCGA-CR-5248-01 8 17532707 17532707 G A MTUS1 Missense_Mutation p.R965W 0.19 deleterious(0) probably_damaging(0.951) TCGA-CR-5248-01 8 19363042 19363042 C T CSGALNACT1 Missense_Mutation p.D102N 0.32 tolerated(0.48) benign(0.009) TCGA-CR-5248-01 8 20074737 20074737 C A ATP6V1B2 Missense_Mutation p.P390T 0.14 deleterious(0) probably_damaging(0.974) TCGA-CR-5248-01 8 29961841 29961841 T - LEPROTL1 Frame_Shift_Del p.Y42Tfs*10 0.13 TCGA-CR-5248-01 8 33357860 33357860 G A TTI2 Nonsense_Mutation p.Q470* 0.17 TCGA-CR-5248-01 8 43053070 43053070 G A HGSNAT Nonsense_Mutation p.W567* 0.21 TCGA-CR-5248-01 8 444518 444518 C G TDRP Missense_Mutation p.R63T 0.09 tolerated(0.52) benign(0.015) TCGA-CR-5248-01 8 55539467 55539467 G A RP1 Missense_Mutation p.V1009I 0.18 tolerated(0.28) benign(0.007) TCGA-CR-5248-01 8 95272531 95272531 G C GEM Missense_Mutation p.I67M 0.17 tolerated(0.06) possibly_damaging(0.88) TCGA-CR-5248-01 9 116079162 116079162 C G WDR31 Missense_Mutation p.G324A 0.33 deleterious(0.01) probably_damaging(0.977) TCGA-CR-5248-01 9 130263293 130263293 G A LRSAM1 Silent p.L639L 0.22 TCGA-CR-5248-01 9 130270171 130270171 C G FAM129B Missense_Mutation p.Q543H 0.13 tolerated(0.08) benign(0.262) TCGA-CR-5248-01 9 136260786 136260786 C A C9orf96 Silent p.A254A 0.29 TCGA-CR-5248-01 9 35605991 35605991 G C TESK1 Missense_Mutation p.R77P 0.06 deleterious(0) probably_damaging(0.979) TCGA-CR-5248-01 9 35606017 35606017 A C TESK1 Missense_Mutation p.K86Q 0.06 deleterious(0) probably_damaging(1) TCGA-CR-5248-01 9 368027 368027 C G DOCK8 Silent p.L563L 0.13 TCGA-CR-5248-01 9 37531963 37531963 A C FBXO10 Missense_Mutation p.I504M 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CR-5248-01 9 5922659 5922659 G A KIAA2026 Nonsense_Mutation p.Q1113* 0.21 TCGA-CR-5248-01 9 75441857 75441857 C G TMC1 Missense_Mutation p.I692M 0.23 deleterious(0) possibly_damaging(0.643) TCGA-CR-5248-01 9 84607429 84607429 G A SPATA31D1 Missense_Mutation p.E682K 0.14 deleterious(0) probably_damaging(0.987) TCGA-CR-5248-01 9 88247624 88247624 C T AGTPBP1 Silent p.P616P 0.15 TCGA-CR-5248-01 X 129201444 129201444 G A ELF4 Missense_Mutation p.S415L 0.40 tolerated(0.15) possibly_damaging(0.704) TCGA-CR-5248-01 X 135795499 135795499 C T ARHGEF6 Missense_Mutation p.E255K 0.44 tolerated(0.07) benign(0.041) TCGA-CR-5248-01 X 152936781 152936781 C T PNCK Silent p.K274K 0.10 TCGA-CR-5248-01 X 35974178 35974178 C T CXorf22 Silent p.F425F 0.52 TCGA-CR-5248-01 X 53618007 53618007 C T HUWE1 Missense_Mutation p.E1350K 0.56 probably_damaging(0.988) TCGA-CR-5248-01 X 71359916 71359916 G C NHSL2 Missense_Mutation p.E840Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-CR-5248-01 Y 23563387 23563387 C G RBMY2EP RNA 0.47 TCGA-CR-5249-01 10 129877950 129877950 G A PTPRE Silent p.V673V 0.21 TCGA-CR-5249-01 10 96348062 96348062 T - HELLS Frame_Shift_Del p.Y469Mfs*16 0.23 TCGA-CR-5249-01 11 121178029 121178029 T C SC5D Silent p.F236F 0.05 TCGA-CR-5249-01 11 30032800 30032800 G A KCNA4 Missense_Mutation p.R476W 0.09 deleterious(0) probably_damaging(0.999) TCGA-CR-5249-01 11 51411725 51411725 G A OR4A5 Missense_Mutation p.T224I 0.11 deleterious_low_confidence(0.03) benign(0.314) TCGA-CR-5249-01 12 52639289 52639289 G A KRT7 Missense_Mutation p.A360T 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-CR-5249-01 14 106641567 106641567 G A IGHV1-18 Missense_Mutation p.A116V 0.28 tolerated(0.09) benign(0.075) TCGA-CR-5249-01 14 31602803 31602803 C T HECTD1 Silent p.G1219G 0.20 TCGA-CR-5249-01 14 55168922 55168922 T C SAMD4A Silent p.I113I 0.23 TCGA-CR-5249-01 15 72691006 72691006 G A TMEM202 Missense_Mutation p.A32T 0.22 tolerated(1) benign(0.001) TCGA-CR-5249-01 16 48221269 48221269 C T ABCC11 Missense_Mutation p.D926N 0.35 deleterious(0.03) possibly_damaging(0.651) TCGA-CR-5249-01 16 69922039 69922039 C A WWP2 Silent p.P267P 0.21 TCGA-CR-5249-01 16 75512887 75512887 C T CHST6 Silent p.P280P 0.23 TCGA-CR-5249-01 17 18967365 18967377 TTCCTCGGGGTTT - SNORD3B-2 RNA 0.26 TCGA-CR-5249-01 17 48070809 48070809 G A DLX3 Silent p.P157P 0.24 TCGA-CR-5249-01 17 6606290 6606290 C T SLC13A5 Missense_Mutation p.E239K 0.19 tolerated(0.23) benign(0.103) TCGA-CR-5249-01 17 78195395 78195395 G T SLC26A11 Missense_Mutation p.R12S 0.32 tolerated_low_confidence(0.42) benign(0.002) TCGA-CR-5249-01 18 8825333 8825333 G A SOGA2 Silent p.E1275E 0.26 TCGA-CR-5249-01 19 10793296 10793296 G A ILF3 Silent p.A488A 0.10 TCGA-CR-5249-01 19 10823854 10823854 C T QTRT1 Missense_Mutation p.R374W 0.18 deleterious(0) possibly_damaging(0.846) TCGA-CR-5249-01 19 13368242 13368242 G T CACNA1A Silent p.I1504I 0.30 TCGA-CR-5249-01 19 37904081 37904081 G T ZNF569 Silent p.P493P 0.25 TCGA-CR-5249-01 19 53367199 53367199 G A CTD-2331H12.5 5'Flank 0.07 TCGA-CR-5249-01 19 7605584 7605584 G A PNPLA6 Silent p.L270L 0.04 TCGA-CR-5249-01 1 145282115 145282115 C T NOTCH2NL 3'UTR 0.13 TCGA-CR-5249-01 1 203743036 203743038 ACA - LAX1 In_Frame_Del p.T142del 0.23 TCGA-CR-5249-01 1 205038678 205038678 G A CNTN2 Missense_Mutation p.V729I 0.08 tolerated(1) benign(0.005) TCGA-CR-5249-01 20 48098552 48098552 G A KCNB1 Missense_Mutation p.R156W 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-CR-5249-01 20 62340307 62340307 C T ZGPAT Silent p.D125D 0.07 TCGA-CR-5249-01 21 43708124 43708124 C G ABCG1 Missense_Mutation p.L367V 0.06 tolerated(0.33) benign(0.001) TCGA-CR-5249-01 2 96970571 96970571 G A SNRNP200 Silent p.L27L 0.33 TCGA-CR-5249-01 3 164906486 164906486 A G SLITRK3 Silent p.D711D 0.15 TCGA-CR-5249-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.67 deleterious(0.04) probably_damaging(0.96) TCGA-CR-5249-01 3 197665623 197665623 G A IQCG Missense_Mutation p.T104M 0.03 tolerated(0.08) benign(0.411) TCGA-CR-5249-01 4 186379447 186379447 C T CCDC110 Missense_Mutation p.R765Q 0.28 tolerated(0.17) benign(0.045) TCGA-CR-5249-01 4 83827690 83827690 A G THAP9 Missense_Mutation p.K164E 0.30 tolerated(0.18) benign(0.004) TCGA-CR-5249-01 5 98237004 98237004 G C CHD1 Missense_Mutation p.S158C 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.7) TCGA-CR-5249-01 6 127911331 127911331 A G C6orf58 Silent p.R258R 0.31 TCGA-CR-5249-01 6 152461285 152461285 G A SYNE1 Nonsense_Mutation p.R8420* 0.22 TCGA-CR-5249-01 7 21598482 21598482 A T DNAH11 Missense_Mutation p.Q186H 0.13 possibly_damaging(0.789) TCGA-CR-5249-01 7 71177228 71177228 C T WBSCR17 3'UTR 0.23 TCGA-CR-5249-01 9 98740378 98740378 C G ERCC6L2 Missense_Mutation p.Q97E 0.21 deleterious(0) probably_damaging(0.995) TCGA-CR-5249-01 X 117532358 117532358 C T WDR44 Missense_Mutation p.A400V 0.26 tolerated(0.07) benign(0.007) TCGA-CR-5249-01 X 14026874 14026874 C G GEMIN8 3'UTR 0.33 TCGA-CR-5249-01 X 91642836 91642836 C G PCDH11X Missense_Mutation p.H1083D 0.22 tolerated(0.79) benign(0.129) TCGA-CR-5250-01 11 46810308 46810308 C T CKAP5 Missense_Mutation p.D631N 0.35 tolerated(0.11) benign(0.06) TCGA-CR-5250-01 11 77921098 77921098 G A USP35 Missense_Mutation p.E733K 0.27 tolerated(0.82) benign(0.009) TCGA-CR-5250-01 11 9466668 9466668 G C IPO7 Missense_Mutation p.G1015A 0.17 tolerated(0.05) possibly_damaging(0.844) TCGA-CR-5250-01 12 104107482 104107482 C A STAB2 Silent p.T1491T 0.33 TCGA-CR-5250-01 12 109697937 109697937 G T ACACB Intron 0.23 TCGA-CR-5250-01 12 120148383 120148383 G T CIT Missense_Mutation p.R1633S 0.28 tolerated(0.48) probably_damaging(0.946) TCGA-CR-5250-01 12 51751183 51751183 C T GALNT6 Missense_Mutation p.G518R 0.19 tolerated(0.13) probably_damaging(0.996) TCGA-CR-5250-01 13 49772367 49772367 A G FNDC3A Missense_Mutation p.I914V 0.33 tolerated(1) benign(0.001) TCGA-CR-5250-01 14 103352585 103352585 C - TRAF3 Frame_Shift_Del p.Q211Rfs*4 0.19 TCGA-CR-5250-01 14 75361079 75361079 C T DLST Missense_Mutation p.A246V 0.49 deleterious(0) possibly_damaging(0.861) TCGA-CR-5250-01 15 25326454 25326454 A G SNORD116-15 RNA 0.13 TCGA-CR-5250-01 15 66729094 66729099 TGGAGA - MAP2K1 In_Frame_Del p.E102_I103del 0.29 TCGA-CR-5250-01 15 68504043 68504043 G A CLN6 Silent p.P152P 0.32 TCGA-CR-5250-01 16 78064792 78064792 G T CLEC3A 3'UTR 0.32 TCGA-CR-5250-01 17 1374583 1374583 G A MYO1C Missense_Mutation p.P690L 0.30 tolerated(0.38) benign(0.007) TCGA-CR-5250-01 17 40376881 40376881 C A STAT5B Silent p.T97T 0.07 TCGA-CR-5250-01 19 54822623 54822623 A G LILRA5 Intron 0.39 TCGA-CR-5250-01 19 55418074 55418074 G A NCR1 Missense_Mutation p.M88I 0.34 deleterious(0.01) possibly_damaging(0.738) TCGA-CR-5250-01 1 181765843 181765843 G A CACNA1E Missense_Mutation p.R2083Q 0.11 deleterious(0) possibly_damaging(0.614) TCGA-CR-5250-01 1 23415367 23415367 G A LUZP1 3'UTR 0.44 TCGA-CR-5250-01 20 54824431 54824431 G C MC3R Missense_Mutation p.V178L 0.36 tolerated(1) benign(0.02) TCGA-CR-5250-01 21 47545929 47545929 C T COL6A2 Missense_Mutation p.R734C 0.27 deleterious(0) probably_damaging(0.999) TCGA-CR-5250-01 2 137814582 137814582 G T THSD7B Missense_Mutation p.K244N 0.44 tolerated(0.13) benign(0.159) TCGA-CR-5250-01 2 168106779 168106779 G A XIRP2 Silent p.S2959S 0.27 TCGA-CR-5250-01 2 175446127 175446127 G C WIPF1 Missense_Mutation p.A31G 0.31 tolerated(0.25) probably_damaging(0.992) TCGA-CR-5250-01 2 179401254 179401254 T C TTN Missense_Mutation p.D33407G 0.27 TCGA-CR-5250-01 2 27886558 27886558 A G SLC4A1AP 5'UTR 0.34 TCGA-CR-5250-01 2 54844759 54844759 A G SPTBN1 Missense_Mutation p.N194S 0.29 deleterious(0) possibly_damaging(0.575) TCGA-CR-5250-01 3 11600120 11600120 G A VGLL4 Silent p.S267S 0.33 TCGA-CR-5250-01 3 128580701 128580701 C T RP11-723O4.9 5'Flank 0.30 TCGA-CR-5250-01 3 128631646 128631646 G A ACAD9 3'UTR 0.26 TCGA-CR-5250-01 3 150421731 150421731 C G FAM194A 5'UTR 0.27 TCGA-CR-5250-01 3 185655648 185655648 T C TRA2B Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) unknown(0) TCGA-CR-5250-01 3 46725326 46725326 G C ALS2CL Missense_Mutation p.H286Q 0.53 tolerated(0.3) benign(0.004) TCGA-CR-5250-01 3 57543283 57543283 C T PDE12 Missense_Mutation p.L393F 0.45 deleterious(0.04) possibly_damaging(0.695) TCGA-CR-5250-01 4 70079789 70079789 G T UGT2B11 Missense_Mutation p.L218I 0.21 tolerated(0.11) benign(0.032) TCGA-CR-5250-01 5 167645514 167645514 G C TENM2 Missense_Mutation p.D1540H 0.33 tolerated(0.06) probably_damaging(0.954) TCGA-CR-5250-01 5 179545821 179545821 G T RASGEF1C Missense_Mutation p.A318D 0.28 deleterious(0.02) benign(0.158) TCGA-CR-5250-01 7 44098509 44098509 C T DBNL Silent p.A263A 0.33 TCGA-CR-5250-01 7 6426860 6426860 G T RAC1 Missense_Mutation p.C18F 0.33 deleterious(0) probably_damaging(0.957) TCGA-CR-5250-01 7 94057678 94057678 C T COL1A2 Silent p.G1200G 0.26 TCGA-CR-5250-01 8 113332168 113332168 T - CSMD3 Frame_Shift_Del p.N2403Mfs*5 0.30 TCGA-CR-5250-01 9 130504111 130504111 T C SH2D3C Missense_Mutation p.M682V 0.34 deleterious(0) probably_damaging(0.996) TCGA-CR-5250-01 9 130886072 130886072 C T PTGES2 Missense_Mutation p.G199S 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-5250-01 9 74975552 74975552 C T ZFAND5 Missense_Mutation p.S48N 0.33 tolerated(0.07) probably_damaging(0.964) TCGA-CR-5250-01 X 134494851 134494851 G A ZNF449 Silent p.G469G 0.71 TCGA-CR-5250-01 X 1471026 1471026 C T IL3RA Missense_Mutation p.T111I 0.36 tolerated(0.05) probably_damaging(0.91) TCGA-CR-5250-01 Y 14885611 14885611 C G USP9Y Missense_Mutation p.R695G 0.75 deleterious(0) probably_damaging(0.999) TCGA-CR-6467-01 10 123989891 123989891 G A TACC2 Missense_Mutation p.R2688Q 0.26 probably_damaging(0.994) TCGA-CR-6467-01 10 14976703 14976703 C T DCLRE1C Missense_Mutation p.R179Q 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-CR-6467-01 10 30638194 30638194 G A MTPAP Missense_Mutation p.P4L 0.09 tolerated_low_confidence(0.31) benign(0.002) TCGA-CR-6467-01 11 46800015 46800015 C G CKAP5 Missense_Mutation p.E856D 0.29 tolerated(1) benign(0.002) TCGA-CR-6467-01 11 534340 534340 C T HRAS 5'UTR 0.55 TCGA-CR-6467-01 11 6630568 6630568 G A ILK Silent p.V219V 0.30 TCGA-CR-6467-01 12 107075889 107075889 G C RFX4 Intron 0.26 TCGA-CR-6467-01 12 4735774 4735774 G A AKAP3 Missense_Mutation p.T765M 0.18 deleterious(0.04) benign(0.117) TCGA-CR-6467-01 12 80726828 80726828 G A OTOGL Missense_Mutation p.M1455I 0.28 tolerated(0.25) benign(0.003) TCGA-CR-6467-01 13 53420242 53420242 C T PCDH8 Missense_Mutation p.R777H 0.47 tolerated(0.07) benign(0.425) TCGA-CR-6467-01 13 92345950 92345950 C T GPC5 Nonsense_Mutation p.R279* 0.43 TCGA-CR-6467-01 14 106967517 106967517 G C IGHV1-46 5'UTR 0.36 TCGA-CR-6467-01 14 44974032 44974032 G A FSCB Missense_Mutation p.P720L 0.30 tolerated(0.36) unknown(0) TCGA-CR-6467-01 15 66795855 66795855 G A RPL4 Missense_Mutation p.P6S 0.71 deleterious(0) probably_damaging(0.978) TCGA-CR-6467-01 16 17202658 17202658 G C XYLT1 Missense_Mutation p.T925R 0.28 tolerated(0.1) possibly_damaging(0.548) TCGA-CR-6467-01 17 40253880 40253880 G A DHX58 Missense_Mutation p.R646W 0.17 deleterious(0) possibly_damaging(0.502) TCGA-CR-6467-01 17 685428 685428 T C GLOD4 Missense_Mutation p.Y23C 0.28 deleterious(0) probably_damaging(0.945) TCGA-CR-6467-01 17 73753345 73753345 C T ITGB4 Silent p.S1761S 0.28 TCGA-CR-6467-01 17 7668743 7668743 G A DNAH2 Nonsense_Mutation p.W1124* 0.26 TCGA-CR-6467-01 18 30969508 30969508 A C CCDC178 Silent p.T68T 0.31 TCGA-CR-6467-01 18 43666161 43666161 G A ATP5A1 Silent p.F449F 0.52 TCGA-CR-6467-01 19 36024376 36024376 G A GAPDHS 5'UTR 0.29 TCGA-CR-6467-01 19 3752701 3752701 C G APBA3 Silent p.R400R 0.40 TCGA-CR-6467-01 19 4684712 4684712 C A DPP9 Missense_Mutation p.R714L 0.30 deleterious(0) probably_damaging(1) TCGA-CR-6467-01 19 56703238 56703238 G C ZSCAN5B Missense_Mutation p.A190G 0.13 tolerated(0.34) benign(0.002) TCGA-CR-6467-01 1 145507653 145507653 C A RBM8A 5'UTR 0.40 TCGA-CR-6467-01 1 152732235 152732235 C T KPRP Silent p.C57C 0.27 TCGA-CR-6467-01 1 27632707 27632707 G A WDTC1 Missense_Mutation p.D622N 0.33 tolerated(0.43) benign(0.23) TCGA-CR-6467-01 1 898584 898584 G T KLHL17 Missense_Mutation p.A380S 0.20 tolerated(0.22) benign(0.225) TCGA-CR-6467-01 20 30617557 30617557 G A CCM2L Silent p.G418G 0.17 TCGA-CR-6467-01 20 35399490 35399490 G A DSN1 Silent p.G47G 0.20 TCGA-CR-6467-01 20 54823948 54823948 G A MC3R Missense_Mutation p.G17S 0.26 tolerated(0.65) benign(0.001) TCGA-CR-6467-01 21 47626627 47626627 C T LSS Missense_Mutation p.G508E 0.26 deleterious(0) probably_damaging(0.995) TCGA-CR-6467-01 22 20458538 20458538 G A RIMBP3 Nonsense_Mutation p.Q922* 0.20 TCGA-CR-6467-01 2 220435109 220435109 C T OBSL1 Silent p.E282E 0.31 TCGA-CR-6467-01 2 241722504 241722504 G A KIF1A Missense_Mutation p.S274L 0.35 deleterious(0) probably_damaging(0.952) TCGA-CR-6467-01 4 110915936 110915936 G A EGF Missense_Mutation p.V969I 0.35 tolerated(0.26) benign(0.002) TCGA-CR-6467-01 4 121957686 121957686 G A NDNF Silent p.I480I 0.24 TCGA-CR-6467-01 4 141583131 141583131 A T TBC1D9 Silent p.A573A 0.31 TCGA-CR-6467-01 4 80247011 80247011 C T NAA11 Silent p.Q7Q 0.36 TCGA-CR-6467-01 5 145851099 145851099 G A TCERG1 Missense_Mutation p.A521T 0.52 tolerated(0.19) unknown(0) TCGA-CR-6467-01 5 14711244 14711244 G A ANKH 3'UTR 0.28 TCGA-CR-6467-01 5 89943471 89943471 C T GPR98 Missense_Mutation p.T1060M 0.19 benign(0.001) TCGA-CR-6467-01 6 152651634 152651634 G A SYNE1 Missense_Mutation p.A4729V 0.27 probably_damaging(0.973) TCGA-CR-6467-01 6 167754366 167754367 - T TTLL2 Frame_Shift_Ins p.S329Ffs*5 0.33 TCGA-CR-6467-01 6 29911160 29911179 CCTGCGCTCTTGGACCGCGG - HLA-A Frame_Shift_Del p.L154Gfs*16 0.38 TCGA-CR-6467-01 6 30571952 30571952 C T PPP1R10 Silent p.A447A 0.71 TCGA-CR-6467-01 7 36194642 36194642 G A EEPD1 Missense_Mutation p.G237R 0.20 tolerated(0.07) possibly_damaging(0.786) TCGA-CR-6467-01 7 44044634 44044634 C T SPDYE1 Intron 0.35 TCGA-CR-6467-01 7 53103445 53103445 C T POM121L12 Silent p.D27D 0.35 TCGA-CR-6467-01 7 6077066 6077066 G A EIF2AK1 Nonsense_Mutation p.R441* 0.41 TCGA-CR-6467-01 8 123966105 123966105 C T ZHX2 Silent p.N785N 0.21 TCGA-CR-6467-01 8 145004309 145004309 C T PLEC Intron 0.56 TCGA-CR-6467-01 8 21851879 21851879 T A XPO7 Silent p.T718T 0.33 TCGA-CR-6467-01 8 37986388 37986388 G A ASH2L Silent p.Q482Q 0.18 TCGA-CR-6467-01 8 66695027 66695027 G A PDE7A Missense_Mutation p.R64C 0.42 deleterious(0.04) possibly_damaging(0.855) TCGA-CR-6467-01 9 128347842 128347842 C T MAPKAP1 Silent p.P221P 0.19 TCGA-CR-6467-01 9 19619581 19619581 C T SLC24A2 Splice_Site p.X360_splice 0.22 TCGA-CR-6467-01 9 34610878 34610878 G C RPP25L Missense_Mutation p.P139R 0.29 tolerated(0.35) probably_damaging(0.937) TCGA-CR-6470-01 10 126312097 126312097 C T FAM53B Missense_Mutation p.R328H 0.50 tolerated(0.55) benign(0.008) TCGA-CR-6470-01 10 29801693 29801693 G A SVIL Nonsense_Mutation p.Q1163* 0.23 TCGA-CR-6470-01 10 33474639 33474639 C T NRP1 Missense_Mutation p.G783D 0.06 deleterious(0) probably_damaging(0.994) TCGA-CR-6470-01 11 48145371 48145371 C G PTPRJ Missense_Mutation p.L275V 0.26 tolerated(1) benign(0.009) TCGA-CR-6470-01 11 66457726 66457726 C T SPTBN2 Missense_Mutation p.R1865Q 0.31 tolerated(0.45) probably_damaging(0.99) TCGA-CR-6470-01 11 77790837 77790837 A G NDUFC2 5'UTR 0.20 TCGA-CR-6470-01 11 792587 792587 C T SLC25A22 Missense_Mutation p.G185S 0.30 deleterious(0) probably_damaging(0.989) TCGA-CR-6470-01 12 1553834 1553834 G A ERC1 Missense_Mutation p.G1044E 0.23 tolerated_low_confidence(0.75) benign(0.002) TCGA-CR-6470-01 12 58217826 58217826 C T CTDSP2 Missense_Mutation p.R184Q 0.11 deleterious(0.03) benign(0.425) TCGA-CR-6470-01 14 92136312 92136312 C T CATSPERB Missense_Mutation p.R378K 0.32 tolerated(1) benign(0) TCGA-CR-6470-01 16 50818266 50818266 A C CYLD Missense_Mutation p.D618A 0.23 deleterious(0) probably_damaging(1) TCGA-CR-6470-01 16 58287951 58287951 T C CCDC113 Missense_Mutation p.V93A 0.07 tolerated(0.38) benign(0.001) TCGA-CR-6470-01 17 34067531 34067531 G A RASL10B Missense_Mutation p.R107H 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-CR-6470-01 17 66898960 66898960 T C ABCA8 Missense_Mutation p.I846M 0.18 tolerated(0.26) benign(0.017) TCGA-CR-6470-01 18 60241452 60241452 A C ZCCHC2 Missense_Mutation p.Y713S 0.20 deleterious(0.01) probably_damaging(0.959) TCGA-CR-6470-01 19 10249194 10249194 G A DNMT1 Missense_Mutation p.P1346S 0.21 deleterious(0) probably_damaging(0.924) TCGA-CR-6470-01 19 15298078 15298078 C T NOTCH3 Missense_Mutation p.V560M 0.21 tolerated(0.08) benign(0.149) TCGA-CR-6470-01 19 3964913 3964913 G A DAPK3 Missense_Mutation p.R47C 0.24 deleterious(0) probably_damaging(0.986) TCGA-CR-6470-01 1 109271297 109271297 C T FNDC7 Silent p.F471F 0.18 TCGA-CR-6470-01 1 210024731 210024731 G A DIEXF Missense_Mutation p.R737Q 0.22 deleterious(0.04) possibly_damaging(0.539) TCGA-CR-6470-01 1 236195924 236195924 C A NID1 Silent p.V438V 0.17 TCGA-CR-6470-01 1 236766584 236766584 G A HEATR1 Nonsense_Mutation p.R79* 0.14 TCGA-CR-6470-01 1 31212769 31212769 G A LAPTM5 Silent p.L92L 0.35 TCGA-CR-6470-01 1 39749133 39749133 G A MACF1 Silent p.S292S 0.24 TCGA-CR-6470-01 1 44433110 44433117 TTCCCCTC - IPO13 Frame_Shift_Del p.F913Cfs*6 0.36 TCGA-CR-6470-01 1 47609516 47609516 G A CYP4A22 Missense_Mutation p.D240N 0.27 tolerated(0.08) benign(0.311) TCGA-CR-6470-01 1 75685020 75685020 C T SLC44A5 Silent p.A396A 0.14 TCGA-CR-6470-01 1 94140372 94140372 G A BCAR3 Missense_Mutation p.P39S 0.14 tolerated_low_confidence(1) benign(0) TCGA-CR-6470-01 20 31890213 31890213 G A BPIFB1 Missense_Mutation p.E326K 0.17 tolerated(0.22) benign(0.007) TCGA-CR-6470-01 22 40283603 40283603 G C ENTHD1 Silent p.L50L 0.23 TCGA-CR-6470-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.21 probably_damaging(1) TCGA-CR-6470-01 2 167273486 167273486 T C SCN7A Missense_Mutation p.R1049G 0.20 deleterious(0) benign(0.09) TCGA-CR-6470-01 2 179597035 179597035 A - TTN Frame_Shift_Del p.L5554Rfs*2 0.20 TCGA-CR-6470-01 2 179598097 179598097 C T TTN Missense_Mutation p.R5308Q 0.24 TCGA-CR-6470-01 2 97019076 97019076 A T NCAPH Missense_Mutation p.I315F 0.30 deleterious(0) probably_damaging(0.939) TCGA-CR-6470-01 3 111312355 111312355 G A ZBED2 3'UTR 0.10 TCGA-CR-6470-01 3 172501696 172501696 C T ECT2 Silent p.L575L 0.07 TCGA-CR-6470-01 4 70615521 70615521 T C SULT1B1 Missense_Mutation p.E98G 0.20 tolerated(0.14) benign(0) TCGA-CR-6470-01 6 123869615 123869615 G A TRDN Silent p.D125D 0.22 TCGA-CR-6470-01 6 26189157 26189157 G A HIST1H4D Missense_Mutation p.L50F 0.30 deleterious(0.02) benign(0.091) TCGA-CR-6470-01 7 104752281 104752281 C T KMT2E Missense_Mutation p.P1360S 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.641) TCGA-CR-6470-01 7 2565945 2565945 G A LFNG Missense_Mutation p.V297M 0.23 deleterious(0) probably_damaging(0.966) TCGA-CR-6470-01 7 45743232 45743232 G A ADCY1 Missense_Mutation p.V869I 0.22 deleterious(0.04) probably_damaging(0.922) TCGA-CR-6470-01 7 76132875 76132875 A T DTX2 Missense_Mutation p.I508L 0.11 deleterious(0) benign(0.432) TCGA-CR-6470-01 X 102192947 102192947 G A RAB40AL Missense_Mutation p.R234K 0.49 tolerated_low_confidence(0.28) probably_damaging(0.989) TCGA-CR-6470-01 X 79979296 79979296 T C BRWD3 Missense_Mutation p.H534R 0.38 deleterious(0) probably_damaging(0.979) TCGA-CR-6471-01 10 104835934 104835934 G A CNNM2 Silent p.L775L 0.20 TCGA-CR-6471-01 10 129216755 129216755 A T DOCK1 Missense_Mutation p.N1527Y 0.21 deleterious(0) benign(0.07) TCGA-CR-6471-01 10 17875801 17875801 G A MRC1L1 Silent p.L255L 0.43 TCGA-CR-6471-01 10 21845639 21845639 G T MLLT10 Intron 0.28 TCGA-CR-6471-01 10 45430152 45430152 G A TMEM72 Missense_Mutation p.R133Q 0.23 tolerated(0.13) benign(0.099) TCGA-CR-6471-01 10 52502706 52502706 A G ASAH2B Missense_Mutation p.M8V 0.24 deleterious_low_confidence(0) benign(0.072) TCGA-CR-6471-01 10 82403807 82403807 A C SH2D4B Silent p.G348G 0.21 TCGA-CR-6471-01 11 1629441 1629441 A G KRTAP5-3 Missense_Mutation p.S59P 0.28 tolerated(0.16) unknown(0) TCGA-CR-6471-01 11 60709581 60709581 G C SLC15A3 Missense_Mutation p.H345D 0.23 deleterious(0) benign(0.345) TCGA-CR-6471-01 11 6653621 6653621 G T DCHS1 Missense_Mutation p.A1041E 0.27 tolerated(0.19) benign(0.054) TCGA-CR-6471-01 12 101748816 101748816 A G UTP20 Missense_Mutation p.I1772V 0.14 deleterious(0.02) benign(0) TCGA-CR-6471-01 12 102153816 102153816 G A GNPTAB Missense_Mutation p.P1081S 0.22 deleterious(0.01) probably_damaging(1) TCGA-CR-6471-01 12 10954990 10954990 G A TAS2R7 Silent p.C60C 0.28 TCGA-CR-6471-01 12 110240837 110240837 C A TRPV4 Missense_Mutation p.R224M 0.33 deleterious(0) possibly_damaging(0.793) TCGA-CR-6471-01 12 121206162 121206162 G C SPPL3 Missense_Mutation p.R247G 0.20 deleterious(0.01) benign(0.316) TCGA-CR-6471-01 12 123201390 123201390 A T HCAR3 5'UTR 0.16 TCGA-CR-6471-01 12 330578 330578 G A SLC6A13 Silent p.L550L 0.35 TCGA-CR-6471-01 12 80730728 80730728 A C OTOGL Missense_Mutation p.K1593Q 0.19 tolerated(0.32) possibly_damaging(0.865) TCGA-CR-6471-01 12 88480186 88480186 T C CEP290 Missense_Mutation p.I1428M 0.22 possibly_damaging(0.771) TCGA-CR-6471-01 13 103343240 103343240 C T METTL21C Missense_Mutation p.E69K 0.31 deleterious(0) possibly_damaging(0.524) TCGA-CR-6471-01 13 27257005 27257005 G A WASF3 Silent p.S415S 0.21 TCGA-CR-6471-01 13 99476709 99476709 G T DOCK9 Silent p.I1691I 0.23 TCGA-CR-6471-01 14 23862217 23862217 C T MYH6 Missense_Mutation p.R1052Q 0.30 deleterious(0) probably_damaging(0.946) TCGA-CR-6471-01 15 41750014 41750014 A G RTF1 Missense_Mutation p.E201G 0.28 deleterious(0) possibly_damaging(0.906) TCGA-CR-6471-01 15 56387585 56387586 - A RFX7 Frame_Shift_Ins p.G781Wfs*7 0.19 TCGA-CR-6471-01 15 65621833 65621833 T G IGDCC3 Silent p.G700G 0.34 TCGA-CR-6471-01 15 89398654 89398654 C T ACAN Silent p.G946G 0.25 TCGA-CR-6471-01 15 91433462 91433462 C T FES Missense_Mutation p.P397L 0.33 tolerated(0.15) benign(0.031) TCGA-CR-6471-01 16 11114117 11114117 G A CLEC16A Silent p.E457E 0.26 TCGA-CR-6471-01 16 1538463 1538463 C T PTX4 Silent p.G2G 0.11 TCGA-CR-6471-01 16 20856094 20856094 C G AC004381.6 Silent p.L621L 0.24 TCGA-CR-6471-01 16 25258086 25258086 G A ZKSCAN2 Silent p.I477I 0.24 TCGA-CR-6471-01 16 30980949 30980949 G A SETD1A Silent p.E985E 0.17 TCGA-CR-6471-01 16 3781253 3781253 G C CREBBP Silent p.V1704V 0.19 TCGA-CR-6471-01 16 640410 640410 A G RAB40C Missense_Mutation p.E40G 0.23 tolerated(0.05) benign(0.163) TCGA-CR-6471-01 16 84115471 84115472 - T MBTPS1 Frame_Shift_Ins p.Q444Afs*17 0.30 TCGA-CR-6471-01 16 84217036 84217036 C T TAF1C Missense_Mutation p.V100M 0.33 deleterious(0.04) benign(0.282) TCGA-CR-6471-01 17 27423781 27423781 C T MYO18A Silent p.R1461R 0.21 TCGA-CR-6471-01 17 38812585 38812585 G A KRT222 3'UTR 0.31 TCGA-CR-6471-01 17 48613879 48613879 C T EPN3 5'UTR 0.26 TCGA-CR-6471-01 17 4926827 4926827 C T KIF1C Missense_Mutation p.A898V 0.23 tolerated_low_confidence(0.35) benign(0.005) TCGA-CR-6471-01 17 5086056 5086056 C T ZNF594 Missense_Mutation p.R499Q 0.17 tolerated(1) benign(0.003) TCGA-CR-6471-01 17 649755 649755 C T GEMIN4 Missense_Mutation p.G510S 0.37 deleterious(0) probably_damaging(1) TCGA-CR-6471-01 17 8273377 8273377 C T KRBA2 Missense_Mutation p.R185Q 0.27 tolerated(0.31) benign(0.032) TCGA-CR-6471-01 18 19379870 19379870 G C MIB1 Missense_Mutation p.V436L 0.26 tolerated(0.06) possibly_damaging(0.844) TCGA-CR-6471-01 18 2732451 2732451 A G SMCHD1 Silent p.R1079R 0.17 TCGA-CR-6471-01 18 45394805 45394805 G A SMAD2 Nonsense_Mutation p.R182* 0.20 TCGA-CR-6471-01 18 580607 580607 G C CETN1 Missense_Mutation p.E67Q 0.20 tolerated(0.06) benign(0.225) TCGA-CR-6471-01 18 67563082 67563082 T A CD226 Missense_Mutation p.Q194H 0.36 tolerated(0.15) probably_damaging(0.909) TCGA-CR-6471-01 18 72343009 72343009 G A ZNF407 Missense_Mutation p.E12K 0.28 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-CR-6471-01 18 77208983 77208983 G A NFATC1 Missense_Mutation p.V517I 0.27 tolerated(1) benign(0.006) TCGA-CR-6471-01 19 11942501 11942501 A G ZNF440 Silent p.K170K 0.34 TCGA-CR-6471-01 19 12541096 12541096 G A ZNF443 Silent p.S630S 0.18 TCGA-CR-6471-01 19 18378184 18378184 G A KIAA1683 Missense_Mutation p.H56Y 0.28 tolerated(0.14) benign(0.027) TCGA-CR-6471-01 19 22941426 22941426 C T ZNF99 Missense_Mutation p.E429K 0.21 deleterious(0.03) probably_damaging(0.994) TCGA-CR-6471-01 19 42546827 42546827 C T GRIK5 Missense_Mutation p.M450I 0.32 deleterious(0.04) possibly_damaging(0.585) TCGA-CR-6471-01 19 47570458 47570458 C T ZC3H4 Missense_Mutation p.A1023T 0.36 unknown(0) TCGA-CR-6471-01 19 55711682 55711682 C T PTPRH Missense_Mutation p.G448R 0.23 probably_damaging(0.991) TCGA-CR-6471-01 19 57803220 57803220 G T ZNF460 Missense_Mutation p.R437S 0.25 deleterious(0.02) possibly_damaging(0.897) TCGA-CR-6471-01 19 5867522 5867522 G A FUT5 Missense_Mutation p.A72V 0.22 tolerated(0.34) benign(0.005) TCGA-CR-6471-01 1 117142910 117142910 G C IGSF3 Missense_Mutation p.S581C 0.19 deleterious(0) probably_damaging(0.995) TCGA-CR-6471-01 1 144931233 144931233 C T PDE4DIP Intron 0.12 TCGA-CR-6471-01 1 159907550 159907550 C T IGSF9 Missense_Mutation p.R109H 0.22 deleterious(0) possibly_damaging(0.726) TCGA-CR-6471-01 1 168014380 168014380 G A DCAF6 Missense_Mutation p.D725N 0.30 tolerated_low_confidence(0.23) benign(0.303) TCGA-CR-6471-01 1 181702754 181702754 C T CACNA1E Missense_Mutation p.R1044W 0.26 deleterious(0) possibly_damaging(0.689) TCGA-CR-6471-01 1 196309633 196309633 G A KCNT2 Nonsense_Mutation p.R541* 0.29 TCGA-CR-6471-01 1 212799632 212799632 T G FAM71A Missense_Mutation p.D471E 0.30 tolerated(0.5) benign(0.01) TCGA-CR-6471-01 1 220805593 220805593 A G MARK1 Missense_Mutation p.I354V 0.25 tolerated(0.7) benign(0) TCGA-CR-6471-01 1 227935613 227935613 A T SNAP47 Missense_Mutation p.E104V 0.29 deleterious(0) probably_damaging(0.984) TCGA-CR-6471-01 1 22923821 22923821 C T EPHA8 Silent p.F594F 0.22 TCGA-CR-6471-01 1 242020736 242020736 A G EXO1 Silent p.Q165Q 0.21 TCGA-CR-6471-01 1 248262997 248262997 C T OR2L13 Missense_Mutation p.A107V 0.22 tolerated(0.26) possibly_damaging(0.881) TCGA-CR-6471-01 1 33059296 33059296 C T ZBTB8A Missense_Mutation p.S255F 0.26 benign(0.003) TCGA-CR-6471-01 1 33235677 33235677 C G KIAA1522 Silent p.V299V 0.28 TCGA-CR-6471-01 1 40424394 40424394 A G MFSD2A Missense_Mutation p.I97V 0.25 tolerated(0.05) possibly_damaging(0.823) TCGA-CR-6471-01 1 53675843 53675843 T A CPT2 Missense_Mutation p.L166H 0.30 deleterious(0) probably_damaging(0.973) TCGA-CR-6471-01 20 10256162 10256162 G A SNAP25 Missense_Mutation p.R8H 0.24 tolerated(0.06) possibly_damaging(0.855) TCGA-CR-6471-01 20 1456848 1456848 G T SIRPB2 Silent p.A331A 0.23 TCGA-CR-6471-01 20 31395666 31395666 G A DNMT3B Missense_Mutation p.R840Q 0.24 deleterious(0.01) probably_damaging(0.978) TCGA-CR-6471-01 21 46000227 46000227 C T KRTAP10-5 Missense_Mutation p.A77T 0.14 tolerated(0.18) unknown(0) TCGA-CR-6471-01 21 46000228 46000228 C T KRTAP10-5 Silent p.P76P 0.17 TCGA-CR-6471-01 22 23264932 23264932 C T IGLC7 Silent p.T56T 0.10 TCGA-CR-6471-01 22 23401824 23401824 G A RTDR1 Missense_Mutation p.A288V 0.11 tolerated(1) benign(0.028) TCGA-CR-6471-01 22 41566460 41566460 A G EP300 Missense_Mutation p.Y1446C 0.40 probably_damaging(1) TCGA-CR-6471-01 2 116503737 116503737 C T DPP10 Missense_Mutation p.P314S 0.07 tolerated(0.05) possibly_damaging(0.731) TCGA-CR-6471-01 2 143913112 143913112 G A ARHGAP15 Missense_Mutation p.R18H 0.26 tolerated(0.15) benign(0) TCGA-CR-6471-01 2 162696359 162696359 T A SLC4A10 Missense_Mutation p.I113N 0.24 tolerated(0.28) benign(0.287) TCGA-CR-6471-01 2 179197685 179197685 A T OSBPL6 Nonsense_Mutation p.R192* 0.26 TCGA-CR-6471-01 2 179473617 179473617 A T TTN Missense_Mutation p.I17374N 0.20 TCGA-CR-6471-01 2 198571571 198571571 G A MARS2 Missense_Mutation p.R481Q 0.21 deleterious(0.01) benign(0.282) TCGA-CR-6471-01 2 220080750 220080750 G A ABCB6 Missense_Mutation p.R375W 0.17 deleterious(0) probably_damaging(1) TCGA-CR-6471-01 2 223917672 223917672 G T KCNE4 Missense_Mutation p.V42F 0.22 deleterious(0) probably_damaging(0.999) TCGA-CR-6471-01 2 224866605 224866605 G A SERPINE2 Missense_Mutation p.L17F 0.31 tolerated(1) benign(0.001) TCGA-CR-6471-01 2 232262638 232262638 G T B3GNT7 Missense_Mutation p.A70S 0.22 tolerated(0.7) benign(0.002) TCGA-CR-6471-01 2 28081341 28081341 C A RBKS Missense_Mutation p.A63S 0.22 tolerated(0.07) possibly_damaging(0.549) TCGA-CR-6471-01 2 31562418 31562418 G - XDH Frame_Shift_Del p.I1238Lfs*54 0.20 TCGA-CR-6471-01 2 33540271 33540271 A G LTBP1 Missense_Mutation p.E1222G 0.19 tolerated(0.15) benign(0.021) TCGA-CR-6471-01 2 44528282 44528282 T C SLC3A1 Intron 0.15 TCGA-CR-6471-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-CR-6471-01 3 178952072 178952072 A G PIK3CA Missense_Mutation p.M1043V 0.23 tolerated(0.06) benign(0.037) TCGA-CR-6471-01 3 184714191 184714191 G T VPS8 Silent p.S1246S 0.38 TCGA-CR-6471-01 3 188242516 188242516 T C LPP Silent p.L124L 0.29 TCGA-CR-6471-01 3 194061983 194061983 G A CPN2 Silent p.Y483Y 0.34 TCGA-CR-6471-01 3 32931915 32931915 A C TRIM71 Missense_Mutation p.N407H 0.24 tolerated(0.2) benign(0.022) TCGA-CR-6471-01 3 33255548 33255548 C T SUSD5 Silent p.L54L 0.14 TCGA-CR-6471-01 3 47163558 47163558 G A SETD2 Silent p.I856I 0.23 TCGA-CR-6471-01 3 48501802 48501802 C T ATRIP Missense_Mutation p.P450L 0.19 deleterious(0.01) benign(0.034) TCGA-CR-6471-01 3 97983874 97983874 G A OR5H6 Missense_Mutation p.G249E 0.15 deleterious(0) probably_damaging(0.973) TCGA-CR-6471-01 3 98001947 98001947 C G OR5H2 Silent p.A72A 0.20 TCGA-CR-6471-01 4 104017355 104017355 G C BDH2 Silent p.G19G 0.32 TCGA-CR-6471-01 4 143003331 143003331 C A INPP4B Missense_Mutation p.R832L 0.19 deleterious(0) probably_damaging(1) TCGA-CR-6471-01 4 185616401 185616401 G C CENPU 3'UTR 0.32 TCGA-CR-6471-01 4 24550530 24550530 C T DHX15 Missense_Mutation p.R399H 0.20 deleterious(0) probably_damaging(0.96) TCGA-CR-6471-01 4 39217514 39217514 C G WDR19 Missense_Mutation p.Q339E 0.27 tolerated(0.49) benign(0.003) TCGA-CR-6471-01 4 55141026 55141026 C T PDGFRA Missense_Mutation p.R558C 0.31 deleterious(0) probably_damaging(0.996) TCGA-CR-6471-01 4 74284002 74284002 G A ALB Silent p.E542E 0.18 TCGA-CR-6471-01 4 84368164 84368164 T C HELQ Missense_Mutation p.I406V 0.24 tolerated(0.65) benign(0.004) TCGA-CR-6471-01 5 102895788 102895788 T G NUDT12 Silent p.A54A 0.12 TCGA-CR-6471-01 5 13839478 13839478 G A DNAH5 Missense_Mutation p.P1957S 0.20 possibly_damaging(0.876) TCGA-CR-6471-01 5 139060923 139060923 G A CXXC5 Missense_Mutation p.R272H 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-CR-6471-01 5 140215783 140215783 G T PCDHA7 Silent p.A605A 0.26 TCGA-CR-6471-01 5 140256301 140256301 G A PCDHA12 Missense_Mutation p.R415H 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.704) TCGA-CR-6471-01 5 140783917 140783918 CA - PCDHGA9 Frame_Shift_Del p.G468Yfs*10 0.14 TCGA-CR-6471-01 5 156186283 156186283 C T SGCD Missense_Mutation p.T252M 0.16 deleterious(0.01) benign(0.097) TCGA-CR-6471-01 5 171520586 171520586 C T STK10 Missense_Mutation p.G462R 0.17 tolerated(0.41) benign(0.069) TCGA-CR-6471-01 5 171534817 171534817 T C STK10 Missense_Mutation p.Q187R 0.21 deleterious(0) possibly_damaging(0.834) TCGA-CR-6471-01 5 171774317 171774317 C T SH3PXD2B Silent p.Q344Q 0.12 TCGA-CR-6471-01 5 2748625 2748625 G A IRX2 Silent p.N399N 0.24 TCGA-CR-6471-01 5 68603840 68603840 C T CCDC125 Missense_Mutation p.A157T 0.51 deleterious(0) probably_damaging(0.99) TCGA-CR-6471-01 6 100841635 100841635 G A SIM1 Missense_Mutation p.S433L 0.18 tolerated(0.17) possibly_damaging(0.866) TCGA-CR-6471-01 6 105406144 105406144 G A LIN28B Missense_Mutation p.D61N 0.25 deleterious(0.01) possibly_damaging(0.587) TCGA-CR-6471-01 6 107019900 107019900 G A RTN4IP1 Nonsense_Mutation p.R388* 0.19 TCGA-CR-6471-01 6 119341157 119341157 G T FAM184A Missense_Mutation p.L440I 0.30 tolerated(0.31) benign(0.016) TCGA-CR-6471-01 6 121600349 121600349 C A TBC1D32 Missense_Mutation p.G551C 0.19 deleterious(0) possibly_damaging(0.641) TCGA-CR-6471-01 6 138539373 138539373 G A PBOV1 Nonsense_Mutation p.R54* 0.21 TCGA-CR-6471-01 6 146350601 146350601 C T GRM1 5'UTR 0.35 TCGA-CR-6471-01 6 27792248 27792248 G - HIST1H4J 3'UTR 0.15 TCGA-CR-6471-01 6 28473490 28473490 G T GPX6 Missense_Mutation p.T150N 0.16 deleterious(0.02) possibly_damaging(0.89) TCGA-CR-6471-01 6 32782192 32782192 G A HLA-DOB Missense_Mutation p.T183I 0.29 tolerated(1) probably_damaging(0.935) TCGA-CR-6471-01 6 34029792 34029792 G T GRM4 Silent p.I250I 0.45 TCGA-CR-6471-01 6 52268776 52268776 C T PAQR8 Silent p.F255F 0.20 TCGA-CR-6471-01 6 54735396 54735396 G A FAM83B Missense_Mutation p.G118S 0.26 tolerated(0.6) benign(0.006) TCGA-CR-6471-01 6 94068069 94068069 G T EPHA7 Missense_Mutation p.T298N 0.11 tolerated(0.12) benign(0.066) TCGA-CR-6471-01 7 103270590 103270590 C T RELN Silent p.K833K 0.16 TCGA-CR-6471-01 7 105099648 105099648 G A PUS7 Silent p.L606L 0.24 TCGA-CR-6471-01 7 122111562 122111562 C T CADPS2 Missense_Mutation p.G685S 0.23 tolerated(0.07) probably_damaging(0.995) TCGA-CR-6471-01 7 128038619 128038619 G T IMPDH1 Missense_Mutation p.A308D 0.23 deleterious(0) probably_damaging(0.978) TCGA-CR-6471-01 7 128454860 128454861 - C CCDC136 Frame_Shift_Ins p.R979Pfs*6 0.35 TCGA-CR-6471-01 7 2946386 2946386 G A CARD11 Silent p.Y1117Y 0.21 TCGA-CR-6471-01 7 44187277 44187277 C T GCK Missense_Mutation p.E280K 0.28 tolerated(0.17) possibly_damaging(0.593) TCGA-CR-6471-01 7 56174126 56174126 G C CHCHD2 5'UTR 0.27 TCGA-CR-6471-01 7 94897863 94897863 C A PPP1R9A Missense_Mutation p.D889E 0.34 deleterious(0) probably_damaging(0.994) TCGA-CR-6471-01 7 94898583 94898583 C T PPP1R9A Missense_Mutation p.T963M 0.36 tolerated(0.11) possibly_damaging(0.459) TCGA-CR-6471-01 8 102381119 102381119 T A NACAP1 RNA 0.24 TCGA-CR-6471-01 8 103281237 103281237 C A UBR5 Nonsense_Mutation p.E2444* 0.18 TCGA-CR-6471-01 8 125989237 125989237 C A ZNF572 Missense_Mutation p.P243T 0.21 deleterious(0) probably_damaging(0.991) TCGA-CR-6471-01 8 131130412 131130412 T G ASAP1 Missense_Mutation p.Q625H 0.45 tolerated(0.06) probably_damaging(0.957) TCGA-CR-6471-01 8 145139718 145139718 C T GPAA1 Silent p.F368F 0.48 TCGA-CR-6471-01 8 2966226 2966226 C T CSMD1 Missense_Mutation p.G2218D 0.28 probably_damaging(1) TCGA-CR-6471-01 8 8559889 8559889 C A CLDN23 5'UTR 0.46 TCGA-CR-6471-01 8 8749414 8749414 G A MFHAS1 Silent p.C385C 0.51 TCGA-CR-6471-01 9 127650555 127650555 G A GOLGA1 Nonsense_Mutation p.Q628* 0.14 TCGA-CR-6471-01 9 127650556 127650556 C A GOLGA1 Missense_Mutation p.E627D 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-CR-6471-01 9 21166295 21166295 T G IFNA21 Missense_Mutation p.E106A 0.21 deleterious(0) benign(0.102) TCGA-CR-6471-01 X 104464900 104464900 C T TEX13A Missense_Mutation p.S61N 0.43 tolerated(0.07) benign(0.168) TCGA-CR-6471-01 X 111195420 111195420 C A TRPC5 Missense_Mutation p.A77S 0.42 tolerated(0.06) probably_damaging(0.986) TCGA-CR-6471-01 X 53587364 53587365 - G HUWE1 Frame_Shift_Ins p.S2508Ifs*81 0.41 TCGA-CR-6472-01 10 105139422 105139422 G T TAF5 Nonsense_Mutation p.E391* 0.34 TCGA-CR-6472-01 10 121541174 121541174 G C INPP5F Missense_Mutation p.R69P 0.25 deleterious(0) possibly_damaging(0.859) TCGA-CR-6472-01 10 12155015 12155015 C T DHTKD1 Silent p.F757F 0.32 TCGA-CR-6472-01 10 133930719 133930719 G A JAKMIP3 Missense_Mutation p.E92K 0.30 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 10 15089243 15089243 C G OLAH 5'UTR 0.38 TCGA-CR-6472-01 10 27048155 27048155 G A ABI1 Missense_Mutation p.S305L 0.34 tolerated_low_confidence(0.42) benign(0.044) TCGA-CR-6472-01 10 27326148 27326148 C G ANKRD26 Missense_Mutation p.E888D 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-CR-6472-01 10 294371 294371 G A ZMYND11 Silent p.K441K 0.42 TCGA-CR-6472-01 10 295119 295119 G A ZMYND11 Intron 0.44 TCGA-CR-6472-01 10 43619153 43619153 A G RET Missense_Mutation p.T946A 0.40 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 10 50311796 50311796 C G VSTM4 Intron 0.29 TCGA-CR-6472-01 10 5807996 5807996 C G GDI2 Missense_Mutation p.K437N 0.35 tolerated(0.15) benign(0.082) TCGA-CR-6472-01 10 6263358 6263358 G C PFKFB3 Silent p.L282L 0.50 TCGA-CR-6472-01 10 70645407 70645407 G A STOX1 Missense_Mutation p.E619K 0.25 tolerated(0.07) benign(0.141) TCGA-CR-6472-01 10 71690269 71690269 G C COL13A1 Missense_Mutation p.E537D 0.35 tolerated(0.46) probably_damaging(0.992) TCGA-CR-6472-01 10 75230956 75230956 G A PPP3CB Silent p.F227F 0.28 TCGA-CR-6472-01 10 75525644 75525644 G T SEC24C Nonsense_Mutation p.E485* 0.36 TCGA-CR-6472-01 10 75897965 75897965 C T AP3M1 Missense_Mutation p.S58N 0.38 tolerated(0.44) benign(0.02) TCGA-CR-6472-01 10 93902855 93902855 G A CPEB3 Missense_Mutation p.R462C 0.37 deleterious(0.02) possibly_damaging(0.756) TCGA-CR-6472-01 10 99120333 99120333 C T RRP12 Missense_Mutation p.E1204K 0.38 deleterious(0.02) benign(0.06) TCGA-CR-6472-01 11 113935271 113935271 G A ZBTB16 Missense_Mutation p.E417K 0.66 tolerated(0.06) benign(0.065) TCGA-CR-6472-01 11 114121062 114121062 G C ZBTB16 Missense_Mutation p.E603Q 0.47 tolerated(0.16) probably_damaging(0.999) TCGA-CR-6472-01 11 11924275 11924275 G A USP47 Missense_Mutation p.E135K 0.67 tolerated(0.18) benign(0.117) TCGA-CR-6472-01 11 124180474 124180474 G A OR8D1 Silent p.L63L 0.51 TCGA-CR-6472-01 11 125765351 125765351 G C PUS3 Missense_Mutation p.Q238E 0.61 tolerated(0.33) benign(0.034) TCGA-CR-6472-01 11 134241000 134241000 C A GLB1L2 Silent p.T438T 0.33 TCGA-CR-6472-01 11 19247323 19247332 CTTGAGTTTT - E2F8 Frame_Shift_Del p.E658Vfs*20 0.60 TCGA-CR-6472-01 11 21581825 21581825 C T NELL1 Missense_Mutation p.S626F 0.58 tolerated(0.24) benign(0.128) TCGA-CR-6472-01 11 30953466 30953466 G T DCDC1 Missense_Mutation p.P917T 0.42 deleterious(0.01) benign(0.188) TCGA-CR-6472-01 11 32460502 32460502 G C WT1 5'Flank 0.29 TCGA-CR-6472-01 11 32953947 32953947 G C QSER1 Missense_Mutation p.K252N 0.39 deleterious(0.03) benign(0.424) TCGA-CR-6472-01 11 33308711 33308711 G A HIPK3 Missense_Mutation p.E251K 0.44 deleterious(0) probably_damaging(0.992) TCGA-CR-6472-01 11 55563457 55563457 C T OR5D14 Silent p.L142L 0.39 TCGA-CR-6472-01 11 55860932 55860932 G A OR8I2 Missense_Mutation p.R50K 0.37 tolerated(0.11) benign(0.002) TCGA-CR-6472-01 11 56950027 56950027 C T LRRC55 Silent p.L220L 0.40 TCGA-CR-6472-01 11 57509396 57509396 G C C11orf31 Missense_Mutation p.E80Q 0.38 deleterious(0.02) probably_damaging(1) TCGA-CR-6472-01 11 58126450 58126450 G A OR5B17 Silent p.L31L 0.40 TCGA-CR-6472-01 11 58920182 58920182 G T FAM111A Silent p.V347V 0.37 TCGA-CR-6472-01 11 61205277 61205277 G A SDHAF2 Missense_Mutation p.E73K 0.33 deleterious(0) probably_damaging(0.982) TCGA-CR-6472-01 11 61543821 61543821 G A MYRF Silent p.T472T 0.39 TCGA-CR-6472-01 11 62365499 62365499 C A MTA2 Nonsense_Mutation p.E163* 0.28 TCGA-CR-6472-01 11 62365820 62365820 C G MTA2 Missense_Mutation p.L117F 0.33 tolerated(0.06) possibly_damaging(0.825) TCGA-CR-6472-01 11 62575026 62575026 G T STX5 Missense_Mutation p.S328Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-CR-6472-01 11 63487851 63487851 C A RTN3 Nonsense_Mutation p.S626* 0.39 TCGA-CR-6472-01 11 64603995 64603995 C G CDC42BPG Silent p.L464L 0.37 TCGA-CR-6472-01 11 64662529 64662529 C G ATG2A Silent p.L1911L 0.30 TCGA-CR-6472-01 11 67177168 67177168 C G TBC1D10C Missense_Mutation p.I428M 0.33 tolerated(0.06) benign(0.001) TCGA-CR-6472-01 11 67177203 67177203 C G TBC1D10C Missense_Mutation p.S440C 0.43 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-CR-6472-01 11 68456340 68456340 G C GAL Missense_Mutation p.E83Q 0.14 deleterious(0.01) possibly_damaging(0.741) TCGA-CR-6472-01 11 68542817 68542817 G A CPT1A Silent p.Y514Y 0.37 TCGA-CR-6472-01 11 70049837 70049837 C T FADD Missense_Mutation p.A91V 0.19 tolerated(0.28) benign(0.004) TCGA-CR-6472-01 11 7022289 7022289 G C ZNF214 Missense_Mutation p.L209V 0.64 tolerated(0.22) benign(0.013) TCGA-CR-6472-01 11 71952253 71952253 C T PHOX2A Missense_Mutation p.A100T 0.39 deleterious(0.01) benign(0.178) TCGA-CR-6472-01 11 73101849 73101849 C G RELT Nonsense_Mutation p.S57* 0.26 TCGA-CR-6472-01 11 747535 747535 C G TALDO1 Silent p.L18L 0.38 TCGA-CR-6472-01 12 101794928 101794928 G C ARL1 Nonsense_Mutation p.S83* 0.25 TCGA-CR-6472-01 12 109051145 109051145 C T CORO1C Missense_Mutation p.D229N 0.38 tolerated(0.29) benign(0.011) TCGA-CR-6472-01 12 109675123 109675123 G C ACACB Missense_Mutation p.E1534Q 0.39 tolerated(0.11) probably_damaging(0.999) TCGA-CR-6472-01 12 109945505 109945505 G A UBE3B Silent p.L529L 0.42 TCGA-CR-6472-01 12 110246198 110246198 G C TRPV4 Silent p.L154L 0.25 TCGA-CR-6472-01 12 113612896 113612896 C A DDX54 Missense_Mutation p.Q273H 0.36 deleterious(0) probably_damaging(0.994) TCGA-CR-6472-01 12 118474261 118474261 G C WSB2 Missense_Mutation p.Q239E 0.39 tolerated(0.25) possibly_damaging(0.554) TCGA-CR-6472-01 12 120518755 120518755 C T CCDC64 Missense_Mutation p.S458F 0.38 deleterious(0.05) benign(0.052) TCGA-CR-6472-01 12 123200745 123200745 G C HCAR3 Missense_Mutation p.F180L 0.32 deleterious(0.04) benign(0.149) TCGA-CR-6472-01 12 125834005 125834020 GAGTCGAGGGATTGTG - TMEM132B Frame_Shift_Del p.S21Ifs*71 0.32 TCGA-CR-6472-01 12 12630651 12630651 C G DUSP16 Missense_Mutation p.E372Q 0.38 tolerated(0.28) benign(0.439) TCGA-CR-6472-01 12 131569129 131569129 G C GPR133 Missense_Mutation p.R531T 0.39 tolerated(0.47) benign(0.027) TCGA-CR-6472-01 12 14019074 14019074 G C GRIN2B Silent p.G23G 0.41 TCGA-CR-6472-01 12 16516983 16516983 C T MGST1 3'UTR 0.29 TCGA-CR-6472-01 12 18439791 18439791 G C PIK3C2G Missense_Mutation p.C230S 0.27 tolerated(0.43) benign(0.018) TCGA-CR-6472-01 12 21629873 21629873 G C RECQL Silent p.L307L 0.10 TCGA-CR-6472-01 12 27235188 27235188 G C C12orf71 Missense_Mutation p.Q77E 0.36 tolerated(0.33) benign(0.006) TCGA-CR-6472-01 12 2774867 2774867 G A CACNA1C Missense_Mutation p.E1555K 0.38 deleterious(0) probably_damaging(0.991) TCGA-CR-6472-01 12 27869326 27869326 C G MRPS35 Missense_Mutation p.R86G 0.50 deleterious(0) possibly_damaging(0.775) TCGA-CR-6472-01 12 40696615 40696615 C G LRRK2 Missense_Mutation p.S1174C 0.27 deleterious(0.01) possibly_damaging(0.88) TCGA-CR-6472-01 12 44238430 44238430 A T TMEM117 5'UTR 0.35 TCGA-CR-6472-01 12 48888677 48888677 G A C12orf54 Silent p.L113L 0.35 TCGA-CR-6472-01 12 48919697 48919697 G A OR8S1 Missense_Mutation p.E95K 0.30 tolerated(0.31) benign(0.009) TCGA-CR-6472-01 12 48919765 48919765 G T OR8S1 Silent p.G117G 0.38 TCGA-CR-6472-01 12 49390461 49390461 G C DDN 3'UTR 0.48 TCGA-CR-6472-01 12 52156422 52156422 G C SCN8A Missense_Mutation p.D836H 0.33 deleterious(0.01) possibly_damaging(0.721) TCGA-CR-6472-01 12 53879964 53879964 C T MAP3K12 Missense_Mutation p.E233K 0.38 deleterious(0.01) possibly_damaging(0.537) TCGA-CR-6472-01 12 54338956 54338956 G C HOXC13 Missense_Mutation p.Q303H 0.36 deleterious(0) probably_damaging(0.996) TCGA-CR-6472-01 12 56742395 56742395 G T STAT2 Missense_Mutation p.P548T 0.39 deleterious(0.04) probably_damaging(0.978) TCGA-CR-6472-01 12 57573152 57573152 C T LRP1 Silent p.I1593I 0.43 TCGA-CR-6472-01 12 57626334 57626334 C G SHMT2 Silent p.L231L 0.34 TCGA-CR-6472-01 12 57850383 57850383 G A INHBE Missense_Mutation p.E269K 0.42 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 12 58163393 58163393 G C METTL1 Missense_Mutation p.I176M 0.33 deleterious(0) probably_damaging(0.997) TCGA-CR-6472-01 12 6554306 6554306 G A CD27 Silent p.L15L 0.38 TCGA-CR-6472-01 12 69218140 69218140 C G MDM2 Intron 0.28 TCGA-CR-6472-01 12 77419538 77419538 C T E2F7 Missense_Mutation p.G789R 0.38 tolerated(0.09) benign(0.015) TCGA-CR-6472-01 12 88381726 88381726 G A C12orf50 Missense_Mutation p.H240Y 0.38 tolerated(0.1) possibly_damaging(0.72) TCGA-CR-6472-01 12 95603900 95603900 T A FGD6 Missense_Mutation p.N387I 0.29 tolerated_low_confidence(0.17) benign(0.193) TCGA-CR-6472-01 12 95603902 95603902 C T FGD6 Silent p.L386L 0.29 TCGA-CR-6472-01 13 24243009 24243009 G A TNFRSF19 Missense_Mutation p.E340K 0.54 deleterious_low_confidence(0.01) benign(0.021) TCGA-CR-6472-01 13 45149790 45149790 G C TSC22D1 Missense_Mutation p.L141V 0.54 deleterious(0.03) probably_damaging(0.99) TCGA-CR-6472-01 13 45149798 45149798 T C TSC22D1 Missense_Mutation p.Y138C 0.50 tolerated(0.05) probably_damaging(0.998) TCGA-CR-6472-01 13 98086796 98086796 G C RAP2A Silent p.V24V 0.64 TCGA-CR-6472-01 14 104206422 104206422 G A PPP1R13B Silent p.P777P 0.62 TCGA-CR-6472-01 14 23901905 23901905 C T MYH7 Missense_Mutation p.E149K 0.60 deleterious(0.02) possibly_damaging(0.852) TCGA-CR-6472-01 14 24886199 24886199 C T NYNRIN Silent p.F1748F 0.55 TCGA-CR-6472-01 14 50117106 50117106 G C POLE2 Silent p.V458V 0.69 TCGA-CR-6472-01 14 55625316 55625316 C G DLGAP5 Silent p.V599V 0.56 TCGA-CR-6472-01 14 58048118 58048118 C A SLC35F4 Silent p.L243L 0.23 TCGA-CR-6472-01 14 69352204 69352204 C G ACTN1 Missense_Mutation p.E441D 0.57 deleterious(0.04) probably_damaging(0.929) TCGA-CR-6472-01 14 70839806 70839806 C T SYNJ2BP Missense_Mutation p.D114N 0.63 tolerated(0.1) benign(0.004) TCGA-CR-6472-01 14 70925890 70925890 C G ADAM21 Silent p.V558V 0.57 TCGA-CR-6472-01 14 77984395 77984395 C G SPTLC2 Missense_Mutation p.E519Q 0.74 deleterious(0.05) possibly_damaging(0.461) TCGA-CR-6472-01 14 92488172 92488172 C G TRIP11 Missense_Mutation p.E106Q 0.53 deleterious(0.03) probably_damaging(0.987) TCGA-CR-6472-01 14 94756786 94756786 C A SERPINA10 Nonsense_Mutation p.E49* 0.55 TCGA-CR-6472-01 14 96783494 96783494 G A ATG2B Silent p.F1066F 0.51 TCGA-CR-6472-01 15 23932341 23932341 C G NDN Silent p.L8L 0.19 TCGA-CR-6472-01 15 25599757 25599757 C T UBE3A Missense_Mutation p.G736D 0.33 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 15 27188522 27188522 G C GABRA5 Missense_Mutation p.K346N 0.33 tolerated(0.14) probably_damaging(0.999) TCGA-CR-6472-01 15 32928207 32928207 C G ARHGAP11A Intron 0.40 TCGA-CR-6472-01 15 34646777 34646777 C G NUTM1 Missense_Mutation p.I374M 0.41 deleterious(0) probably_damaging(0.997) TCGA-CR-6472-01 15 40591134 40591134 C G PLCB2 Missense_Mutation p.E239Q 0.27 deleterious(0.01) benign(0.378) TCGA-CR-6472-01 15 43020963 43020963 G C CDAN1 Silent p.L897L 0.38 TCGA-CR-6472-01 15 44955770 44955770 G C SPG11 Missense_Mutation p.L26V 0.62 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-CR-6472-01 15 52242003 52242003 A T LEO1 Splice_Site p.X600_splice 0.29 TCGA-CR-6472-01 15 59373350 59373350 C T RNF111 Nonsense_Mutation p.Q722* 0.34 TCGA-CR-6472-01 15 60795042 60795042 C T RORA Missense_Mutation p.R400K 0.37 deleterious(0.03) possibly_damaging(0.762) TCGA-CR-6472-01 15 63449646 63449646 C A RPS27L 5'UTR 0.36 TCGA-CR-6472-01 15 72154892 72154892 C T MYO9A Missense_Mutation p.E2014K 0.44 deleterious(0) possibly_damaging(0.459) TCGA-CR-6472-01 15 76016477 76016477 C G ODF3L1 5'UTR 0.43 TCGA-CR-6472-01 15 78783062 78783062 C G IREB2 Missense_Mutation p.I761M 0.36 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 15 81592437 81592437 C T IL16 Missense_Mutation p.P924S 0.45 tolerated(0.29) benign(0.011) TCGA-CR-6472-01 15 85399943 85399943 G A ALPK3 Silent p.Q860Q 0.29 TCGA-CR-6472-01 16 11643571 11643571 G C LITAF Missense_Mutation p.F136L 0.48 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 16 11773491 11773491 C T TXNDC11 Missense_Mutation p.E813K 0.31 deleterious(0) probably_damaging(0.994) TCGA-CR-6472-01 16 15917115 15917115 G A MYH11 Nonsense_Mutation p.Q167* 0.33 TCGA-CR-6472-01 16 1996986 1996986 G A RPL3L Missense_Mutation p.R268W 0.30 tolerated(0.05) benign(0.159) TCGA-CR-6472-01 16 20952835 20952835 G C DNAH3 Missense_Mutation p.L3848V 0.26 deleterious(0.01) possibly_damaging(0.512) TCGA-CR-6472-01 16 2153846 2153846 C G PKD1 Missense_Mutation p.E2738Q 0.29 possibly_damaging(0.536) TCGA-CR-6472-01 16 2296965 2296965 C G ECI1 Missense_Mutation p.K63N 0.32 tolerated(0.64) benign(0.008) TCGA-CR-6472-01 16 2334310 2334310 C T ABCA3 Missense_Mutation p.E1278K 0.40 tolerated(0.94) benign(0.002) TCGA-CR-6472-01 16 24950913 24950913 C G ARHGAP17 Missense_Mutation p.G499A 0.60 tolerated(0.1) benign(0.109) TCGA-CR-6472-01 16 2764177 2764177 G C PRSS27 Missense_Mutation p.P133A 0.47 tolerated(0.13) possibly_damaging(0.651) TCGA-CR-6472-01 16 2770207 2770207 G A PRSS27 5'UTR 0.78 TCGA-CR-6472-01 16 30006744 30006744 G T HIRIP3 Missense_Mutation p.H36N 0.24 deleterious(0) benign(0.417) TCGA-CR-6472-01 16 30594888 30594888 C T ZNF785 Intron 0.25 TCGA-CR-6472-01 16 336596 336596 G C PDIA2 Missense_Mutation p.W428S 0.31 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 16 3779048 3779048 C T CREBBP Silent p.L2000L 0.64 TCGA-CR-6472-01 16 48595137 48595137 C T N4BP1 Missense_Mutation p.E473K 0.34 tolerated(0.42) benign(0.118) TCGA-CR-6472-01 16 48595296 48595296 C A N4BP1 Nonsense_Mutation p.E420* 0.40 TCGA-CR-6472-01 16 50325658 50325658 C T ADCY7 Silent p.F129F 0.20 TCGA-CR-6472-01 16 51174620 51174620 G C SALL1 Missense_Mutation p.H505D 0.34 deleterious(0) possibly_damaging(0.674) TCGA-CR-6472-01 16 56536599 56536599 G A BBS2 Missense_Mutation p.S309L 0.32 deleterious(0) possibly_damaging(0.883) TCGA-CR-6472-01 16 57238671 57238671 G A RSPRY1 Missense_Mutation p.G34E 0.39 tolerated_low_confidence(1) benign(0) TCGA-CR-6472-01 16 57954370 57954370 G C CNGB1 Silent p.L574L 0.51 TCGA-CR-6472-01 16 58301439 58301439 G T CCDC113 Silent p.L280L 0.36 TCGA-CR-6472-01 16 66620961 66620961 G C CMTM2 Missense_Mutation p.R169T 0.31 tolerated(0.13) benign(0.028) TCGA-CR-6472-01 16 67042973 67042973 C G CES4A 3'UTR 0.31 TCGA-CR-6472-01 16 67861873 67861873 C G TSNAXIP1 Missense_Mutation p.R652G 0.33 deleterious(0.01) possibly_damaging(0.878) TCGA-CR-6472-01 16 67974294 67974294 G C LCAT Missense_Mutation p.S279C 0.29 tolerated(0.12) possibly_damaging(0.684) TCGA-CR-6472-01 16 67985730 67985730 G C SLC12A4 Silent p.L378L 0.35 TCGA-CR-6472-01 16 68217146 68217146 C G NFATC3 Missense_Mutation p.H659D 0.31 tolerated(0.21) benign(0.028) TCGA-CR-6472-01 16 745766 745766 G T FBXL16 Nonsense_Mutation p.S264* 0.29 TCGA-CR-6472-01 16 84444203 84444203 C T ATP2C2 Silent p.F149F 0.54 TCGA-CR-6472-01 16 87369778 87369778 G C FBXO31 Missense_Mutation p.I275M 0.40 tolerated(0.07) probably_damaging(0.985) TCGA-CR-6472-01 16 88947816 88947816 C T CBFA2T3 Missense_Mutation p.E429K 0.67 deleterious(0.01) possibly_damaging(0.897) TCGA-CR-6472-01 17 1675163 1675163 C T SERPINF1 Intron 0.45 TCGA-CR-6472-01 17 27208935 27208935 C G FLOT2 Missense_Mutation p.E271Q 0.33 tolerated(0.86) possibly_damaging(0.505) TCGA-CR-6472-01 17 28361326 28361326 G T EFCAB5 Nonsense_Mutation p.E375* 0.22 TCGA-CR-6472-01 17 29185216 29185216 G C ATAD5 Missense_Mutation p.R944T 0.45 deleterious(0) probably_damaging(0.964) TCGA-CR-6472-01 17 37340341 37340341 G C CACNB1 Missense_Mutation p.L281V 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-CR-6472-01 17 37792160 37792160 C T PPP1R1B 3'UTR 0.39 TCGA-CR-6472-01 17 37873788 37873788 C G ERBB2 Intron 0.43 TCGA-CR-6472-01 17 38347604 38347604 G A RAPGEFL1 Missense_Mutation p.G252S 0.47 tolerated(0.43) benign(0.015) TCGA-CR-6472-01 17 39595601 39595601 C T KRT38 Missense_Mutation p.E196K 0.35 deleterious(0) probably_damaging(0.942) TCGA-CR-6472-01 17 39780615 39780615 G A KRT17 Silent p.G49G 0.39 TCGA-CR-6472-01 17 40704915 40704915 C T HSD17B1 5'UTR 0.35 TCGA-CR-6472-01 17 40733894 40733894 G C FAM134C Missense_Mutation p.D446E 0.39 deleterious(0) probably_damaging(0.998) TCGA-CR-6472-01 17 40734073 40734073 G A FAM134C Missense_Mutation p.L387F 0.38 tolerated(0.08) benign(0.11) TCGA-CR-6472-01 17 42084746 42084746 C G NAGS Missense_Mutation p.D384E 0.32 tolerated(0.36) benign(0.034) TCGA-CR-6472-01 17 42338013 42338013 G C SLC4A1 Silent p.V113V 0.44 TCGA-CR-6472-01 17 43246753 43246753 C A HEXIM2 Missense_Mutation p.F146L 0.39 deleterious(0) probably_damaging(0.996) TCGA-CR-6472-01 17 44248690 44248690 G C KANSL1 Missense_Mutation p.L274V 0.21 tolerated(0.5) benign(0.001) TCGA-CR-6472-01 17 4636382 4636382 C G MED11 Missense_Mutation p.S85C 0.65 tolerated(0.07) benign(0.261) TCGA-CR-6472-01 17 463774 463774 G A VPS53 Silent p.L532L 0.08 TCGA-CR-6472-01 17 463775 463775 A T VPS53 Missense_Mutation p.L532H 0.08 deleterious(0) probably_damaging(0.952) TCGA-CR-6472-01 17 46862508 46862508 C G TTLL6 Missense_Mutation p.R606T 0.36 tolerated(0.1) benign(0.23) TCGA-CR-6472-01 17 47022055 47022055 C G SNF8 Missense_Mutation p.K14N 0.39 tolerated(0.07) benign(0.13) TCGA-CR-6472-01 17 49054546 49054546 G C SPAG9 Missense_Mutation p.T1149R 0.40 deleterious(0) probably_damaging(0.988) TCGA-CR-6472-01 17 58511065 58511065 G A C17orf64 3'Flank 0.35 TCGA-CR-6472-01 17 62290455 62290455 C T TEX2 Missense_Mutation p.E375K 0.27 tolerated(0.7) benign(0.087) TCGA-CR-6472-01 17 66524033 66524033 C G PRKAR1A Missense_Mutation p.S254C 0.27 deleterious(0.01) possibly_damaging(0.745) TCGA-CR-6472-01 17 67136865 67136865 G A ABCA6 5'UTR 0.56 TCGA-CR-6472-01 17 685477 685477 G A GLOD4 Silent p.L7L 0.53 TCGA-CR-6472-01 17 685930 685930 G T RNMTL1 Silent p.L104L 0.50 TCGA-CR-6472-01 17 7122203 7122203 C G DLG4 5'UTR 0.55 TCGA-CR-6472-01 17 71281968 71281968 G A CDC42EP4 Silent p.I224I 0.27 TCGA-CR-6472-01 17 71364591 71364591 C T SDK2 Missense_Mutation p.D1708N 0.12 deleterious(0) probably_damaging(0.967) TCGA-CR-6472-01 17 71415334 71415334 C G SDK2 Missense_Mutation p.Q719H 0.28 tolerated(0.77) probably_damaging(0.996) TCGA-CR-6472-01 17 73127368 73127368 C T NT5C Silent p.V61V 0.23 TCGA-CR-6472-01 17 73569168 73569168 G A LLGL2 Missense_Mutation p.R845Q 0.56 deleterious(0) benign(0.285) TCGA-CR-6472-01 17 73736024 73736024 A G ITGB4 Missense_Mutation p.H773R 0.17 deleterious(0) probably_damaging(0.997) TCGA-CR-6472-01 17 74006418 74006418 C T EVPL Silent p.E956E 0.22 TCGA-CR-6472-01 17 7481674 7481674 G C EIF4A1 Missense_Mutation p.G364A 0.04 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 17 76694965 76694965 C G CYTH1 Missense_Mutation p.E212D 0.27 tolerated(0.15) benign(0.004) TCGA-CR-6472-01 17 78348306 78348306 G A RNF213 Missense_Mutation p.G4331S 0.22 probably_damaging(0.998) TCGA-CR-6472-01 17 79954344 79954344 G C ASPSCR1 Silent p.L185L 0.16 TCGA-CR-6472-01 17 8379172 8379172 C G MYH10 Missense_Mutation p.E1992Q 0.58 benign(0.188) TCGA-CR-6472-01 17 8393817 8393817 C G MYH10 Missense_Mutation p.M1575I 0.52 probably_damaging(0.964) TCGA-CR-6472-01 18 19237110 19237110 G A ABHD3 Silent p.H282H 0.30 TCGA-CR-6472-01 18 21705475 21705475 C G TTC39C Missense_Mutation p.P461A 0.39 tolerated(0.06) benign(0.139) TCGA-CR-6472-01 18 22642517 22642517 C T ZNF521 3'UTR 0.38 TCGA-CR-6472-01 18 2700762 2700762 G C SMCHD1 Missense_Mutation p.R498T 0.42 tolerated(0.26) possibly_damaging(0.511) TCGA-CR-6472-01 18 2724980 2724980 C A SMCHD1 Missense_Mutation p.S896Y 0.48 tolerated(0.51) possibly_damaging(0.534) TCGA-CR-6472-01 18 31314318 31314318 G T ASXL3 Nonsense_Mutation p.E341* 0.27 TCGA-CR-6472-01 18 55103474 55103474 C T ONECUT2 Missense_Mutation p.P176S 0.50 tolerated(0.25) benign(0.079) TCGA-CR-6472-01 18 59895656 59895656 G A KIAA1468 Missense_Mutation p.V425I 0.33 tolerated(0.58) benign(0.001) TCGA-CR-6472-01 18 60642700 60642700 G C PHLPP1 Missense_Mutation p.D1276H 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-CR-6472-01 18 60642822 60642822 G A PHLPP1 Silent p.L1316L 0.35 TCGA-CR-6472-01 18 61034360 61034360 G A KDSR 5'UTR 0.50 TCGA-CR-6472-01 18 61064456 61064456 C T VPS4B Silent p.P301P 0.09 TCGA-CR-6472-01 18 70502470 70502470 C T NETO1 Intron 0.25 TCGA-CR-6472-01 18 72344264 72344264 G A ZNF407 Missense_Mutation p.R430Q 0.43 deleterious(0.02) possibly_damaging(0.463) TCGA-CR-6472-01 19 10104345 10104345 C T COL5A3 Missense_Mutation p.D549N 0.25 unknown(0) TCGA-CR-6472-01 19 1032417 1032417 C G CNN2 Missense_Mutation p.S71C 0.37 deleterious(0) possibly_damaging(0.524) TCGA-CR-6472-01 19 11517470 11517470 G A RGL3 Silent p.L236L 0.39 TCGA-CR-6472-01 19 11618651 11618651 C T ECSIT Missense_Mutation p.D271N 0.31 tolerated(0.12) possibly_damaging(0.533) TCGA-CR-6472-01 19 11998761 11998761 G T ZNF69 Missense_Mutation p.R8M 0.26 deleterious_low_confidence(0.02) benign(0.059) TCGA-CR-6472-01 19 12060754 12060754 G A ZNF700 Missense_Mutation p.E639K 0.32 tolerated(0.15) benign(0.101) TCGA-CR-6472-01 19 12061174 12061174 G C ZNF700 3'UTR 0.35 TCGA-CR-6472-01 19 12779095 12779095 G C WDR83OS 3'UTR 0.30 TCGA-CR-6472-01 19 14203941 14203941 C G PRKACA Missense_Mutation p.E347Q 0.35 deleterious(0.01) benign(0.31) TCGA-CR-6472-01 19 14676041 14676041 C T TECR Missense_Mutation p.P231L 0.39 deleterious(0.04) benign(0.424) TCGA-CR-6472-01 19 15224468 15224468 G A SYDE1 Silent p.V634V 0.31 TCGA-CR-6472-01 19 15586745 15586745 C T PGLYRP2 Missense_Mutation p.E246K 0.35 deleterious(0.03) possibly_damaging(0.844) TCGA-CR-6472-01 19 15918881 15918881 G A OR10H1 5'UTR 0.38 TCGA-CR-6472-01 19 17608070 17608070 C G SLC27A1 Missense_Mutation p.Q335E 0.39 deleterious(0) possibly_damaging(0.794) TCGA-CR-6472-01 19 17918980 17918980 C T B3GNT3 Missense_Mutation p.R122C 0.10 deleterious(0) probably_damaging(0.997) TCGA-CR-6472-01 19 1828053 1828053 G A REXO1 Silent p.L245L 0.36 TCGA-CR-6472-01 19 18956861 18956861 G A UPF1 Missense_Mutation p.E102K 0.46 tolerated(0.09) benign(0.373) TCGA-CR-6472-01 19 18967806 18967806 C A UPF1 Missense_Mutation p.P649T 0.37 deleterious(0) probably_damaging(0.99) TCGA-CR-6472-01 19 22940553 22940553 G C ZNF99 Missense_Mutation p.L720V 0.32 deleterious(0.02) probably_damaging(0.947) TCGA-CR-6472-01 19 22952052 22952052 C A ZNF99 Missense_Mutation p.Q26H 0.35 deleterious(0) possibly_damaging(0.658) TCGA-CR-6472-01 19 23318824 23318824 G C ZNF730 Missense_Mutation p.D69H 0.42 deleterious(0) benign(0.377) TCGA-CR-6472-01 19 2759262 2759262 G A SGTA Nonsense_Mutation p.Q244* 0.30 TCGA-CR-6472-01 19 2851477 2851477 C G ZNF555 Missense_Mutation p.Q48E 0.39 tolerated(0.32) benign(0.016) TCGA-CR-6472-01 19 3028701 3028701 C T TLE2 Intron 0.39 TCGA-CR-6472-01 19 32949405 32949405 C T DPY19L3 Missense_Mutation p.H438Y 0.41 deleterious(0.04) benign(0.217) TCGA-CR-6472-01 19 34904736 34904736 C G PDCD2L Missense_Mutation p.Q261E 0.26 tolerated(0.21) benign(0.403) TCGA-CR-6472-01 19 36431159 36431159 C T LRFN3 Silent p.L278L 0.29 TCGA-CR-6472-01 19 37253246 37253246 C G ZNF850 Missense_Mutation p.D34H 0.31 deleterious(0) probably_damaging(0.961) TCGA-CR-6472-01 19 38976417 38976417 G A RYR1 Missense_Mutation p.A1708T 0.37 benign(0.099) TCGA-CR-6472-01 19 39915437 39915437 G C PLEKHG2 Missense_Mutation p.D1222H 0.34 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-CR-6472-01 19 39962116 39962116 C T SUPT5H Silent p.I599I 0.36 TCGA-CR-6472-01 19 40996095 40996095 C G SPTBN4 Missense_Mutation p.I145M 0.40 deleterious(0) probably_damaging(0.979) TCGA-CR-6472-01 19 41895711 41895711 C G EXOSC5 Missense_Mutation p.D162H 0.39 deleterious(0.02) benign(0.012) TCGA-CR-6472-01 19 42406794 42406803 TGTGCCTTCG - ARHGEF1 Frame_Shift_Del p.A553Rfs*14 0.44 TCGA-CR-6472-01 19 42558072 42558072 C G GRIK5 Missense_Mutation p.D356H 0.45 deleterious(0.03) probably_damaging(0.961) TCGA-CR-6472-01 19 42827732 42827732 C G TMEM145 Intron 0.31 TCGA-CR-6472-01 19 42827884 42827884 C T TMEM145 Silent p.I448I 0.37 TCGA-CR-6472-01 19 45161157 45161157 G A PVR Missense_Mutation p.E324K 0.31 deleterious(0.03) possibly_damaging(0.896) TCGA-CR-6472-01 19 45681487 45681487 C T TRAPPC6A 5'UTR 0.35 TCGA-CR-6472-01 19 46800352 46800352 C G HIF3A Missense_Mutation p.R7G 0.40 deleterious(0.04) benign(0.003) TCGA-CR-6472-01 19 47597670 47597670 C T ZC3H4 Silent p.K119K 0.32 TCGA-CR-6472-01 19 47960796 47960796 C A SLC8A2 Missense_Mutation p.W244L 0.39 deleterious(0.03) benign(0.02) TCGA-CR-6472-01 19 49391429 49391429 C A TULP2 Silent p.L242L 0.48 TCGA-CR-6472-01 19 49621200 49621200 G A LIN7B Missense_Mutation p.R176Q 0.31 tolerated(0.23) benign(0.007) TCGA-CR-6472-01 19 49657828 49657828 C G HRC Missense_Mutation p.E223Q 0.27 deleterious(0.03) possibly_damaging(0.904) TCGA-CR-6472-01 19 49657906 49657907 - CTG HRC In_Frame_Ins p.E196_E197insQ 0.35 TCGA-CR-6472-01 19 50285913 50285913 C T AP2A1 Silent p.I135I 0.21 TCGA-CR-6472-01 19 50510833 50510833 G C VRK3 Silent p.L180L 0.23 TCGA-CR-6472-01 19 50542425 50542425 T G ZNF473 Missense_Mutation p.V6G 0.31 deleterious(0) possibly_damaging(0.908) TCGA-CR-6472-01 19 52023242 52023242 C G SIGLEC6 3'UTR 0.52 TCGA-CR-6472-01 19 52537236 52537236 C G ZNF432 Missense_Mutation p.E566Q 0.31 deleterious(0.02) possibly_damaging(0.566) TCGA-CR-6472-01 19 55247444 55247444 G A KIR3DL3 Missense_Mutation p.D372N 0.28 tolerated(0.22) benign(0.334) TCGA-CR-6472-01 19 55668994 55668994 G C TNNI3 5'UTR 0.35 TCGA-CR-6472-01 19 56041144 56041144 C T SBK2 Missense_Mutation p.E335K 0.36 tolerated(0.27) unknown(0) TCGA-CR-6472-01 19 57888534 57888534 G C ZNF547 Missense_Mutation p.E64Q 0.36 tolerated(0.09) benign(0.001) TCGA-CR-6472-01 19 58153116 58153116 G C ZNF211 Missense_Mutation p.G486A 0.31 deleterious(0) probably_damaging(0.998) TCGA-CR-6472-01 19 619625 619625 C A POLRMT Missense_Mutation p.Q1009H 0.33 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 19 8976578 8976578 C T MUC16 Intron 0.42 TCGA-CR-6472-01 19 9019597 9019597 C T MUC16 Intron 0.34 TCGA-CR-6472-01 19 9066076 9066076 G A MUC16 Missense_Mutation p.L7124F 0.27 unknown(0) TCGA-CR-6472-01 1 101704696 101704696 C T S1PR1 Silent p.F52F 0.35 TCGA-CR-6472-01 1 104112347 104112347 G C AMY2B Intron 0.50 TCGA-CR-6472-01 1 10707968 10707968 C T CASZ1 Missense_Mutation p.M1129I 0.67 tolerated(0.19) benign(0.02) TCGA-CR-6472-01 1 109811620 109811621 TG - CELSR2 Frame_Shift_Del p.V2208Lfs*36 0.29 TCGA-CR-6472-01 1 110294644 110294644 C T EPS8L3 Silent p.L470L 0.32 TCGA-CR-6472-01 1 111146834 111146834 C T KCNA2 Missense_Mutation p.E191K 0.34 tolerated(0.19) benign(0.001) TCGA-CR-6472-01 1 112309284 112309284 G A DDX20 Silent p.L746L 0.32 TCGA-CR-6472-01 1 114226508 114226508 G C MAGI3 Missense_Mutation p.E1440Q 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.557) TCGA-CR-6472-01 1 145522727 145522727 C A PEX11B Silent p.L196L 0.17 TCGA-CR-6472-01 1 147381142 147381142 G A GJA8 Missense_Mutation p.E354K 0.15 tolerated(0.35) benign(0.115) TCGA-CR-6472-01 1 149762936 149762936 G C FCGR1A Missense_Mutation p.D330H 0.16 tolerated(0.16) possibly_damaging(0.462) TCGA-CR-6472-01 1 149858839 149858839 G T HIST2H2AC Missense_Mutation p.Q105H 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-CR-6472-01 1 149878401 149878401 G C SV2A Missense_Mutation p.F562L 0.26 tolerated(0.56) benign(0.209) TCGA-CR-6472-01 1 151630748 151630748 C G SNX27 Missense_Mutation p.S194C 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-CR-6472-01 1 152282183 152282183 C T FLG Missense_Mutation p.E1727K 0.25 benign(0.292) TCGA-CR-6472-01 1 152648745 152648745 G T LCE2C Missense_Mutation p.R85L 0.04 tolerated_low_confidence(0.06) unknown(0) TCGA-CR-6472-01 1 155984754 155984754 C A SSR2 Missense_Mutation p.V121L 0.17 tolerated(0.64) benign(0.14) TCGA-CR-6472-01 1 160309718 160309718 C G COPA Missense_Mutation p.G70A 0.23 deleterious(0.02) probably_damaging(0.979) TCGA-CR-6472-01 1 160340937 160340937 C T NHLH1 3'UTR 0.24 TCGA-CR-6472-01 1 161172237 161172237 G C NDUFS2 Missense_Mutation p.G21A 0.08 tolerated_low_confidence(0.94) benign(0) TCGA-CR-6472-01 1 162745470 162745470 A G DDR2 Missense_Mutation p.M629V 0.07 deleterious(0) possibly_damaging(0.612) TCGA-CR-6472-01 1 168014240 168014240 C T DCAF6 Missense_Mutation p.S678L 0.21 tolerated_low_confidence(0.17) benign(0.001) TCGA-CR-6472-01 1 171530231 171530231 C G PRRC2C Missense_Mutation p.P2034A 0.26 benign(0.016) TCGA-CR-6472-01 1 171560972 171560972 G T PRRC2C Nonsense_Mutation p.E2814* 0.20 TCGA-CR-6472-01 1 173545823 173545823 C T SLC9C2 Silent p.P293P 0.26 TCGA-CR-6472-01 1 174363181 174363181 G C RABGAP1L Missense_Mutation p.K536N 0.27 deleterious(0) benign(0.174) TCGA-CR-6472-01 1 175360470 175360470 C G TNR Silent p.L487L 0.31 TCGA-CR-6472-01 1 176983947 176983947 G A ASTN1 Silent p.N501N 0.29 TCGA-CR-6472-01 1 177226275 177226275 G C BRINP2 Intron 0.31 TCGA-CR-6472-01 1 178389654 178389654 C G RASAL2 Missense_Mutation p.F191L 0.19 tolerated(1) benign(0.027) TCGA-CR-6472-01 1 179972362 179972362 G C CEP350 Missense_Mutation p.E358Q 0.21 probably_damaging(0.947) TCGA-CR-6472-01 1 180199673 180199673 G A LHX4 Silent p.Q3Q 0.21 TCGA-CR-6472-01 1 180843068 180843068 G C XPR1 Missense_Mutation p.E600Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 1 181689972 181689972 C G CACNA1E Missense_Mutation p.A646G 0.17 deleterious(0) possibly_damaging(0.694) TCGA-CR-6472-01 1 182555377 182555377 C G RNASEL Missense_Mutation p.D189H 0.25 tolerated(0.23) benign(0.036) TCGA-CR-6472-01 1 183196670 183196670 G A LAMC2 Missense_Mutation p.E436K 0.17 tolerated(0.32) probably_damaging(0.985) TCGA-CR-6472-01 1 183938448 183938448 T C COLGALT2 Missense_Mutation p.T263A 0.21 tolerated(0.89) benign(0.001) TCGA-CR-6472-01 1 197070880 197070880 G A ASPM Nonsense_Mutation p.Q2501* 0.26 TCGA-CR-6472-01 1 200143123 200143123 G C NR5A2 Missense_Mutation p.E471Q 0.17 tolerated(0.11) benign(0.275) TCGA-CR-6472-01 1 202288024 202288024 G A LGR6 Missense_Mutation p.D865N 0.25 deleterious(0.04) possibly_damaging(0.786) TCGA-CR-6472-01 1 203054939 203054939 C T MYOG Missense_Mutation p.E51K 0.34 tolerated(0.12) benign(0.085) TCGA-CR-6472-01 1 203316468 203316468 C G FMOD Missense_Mutation p.V311L 0.24 deleterious(0.01) possibly_damaging(0.863) TCGA-CR-6472-01 1 203316478 203316478 C G FMOD Missense_Mutation p.K307N 0.25 deleterious(0.02) possibly_damaging(0.859) TCGA-CR-6472-01 1 205027723 205027723 G A CNTN2 Missense_Mutation p.R140Q 0.59 deleterious(0) possibly_damaging(0.81) TCGA-CR-6472-01 1 205495256 205495256 G C CDK18 Missense_Mutation p.E204Q 0.29 deleterious(0.02) probably_damaging(0.915) TCGA-CR-6472-01 1 206942023 206942023 G A IL10 Silent p.I165I 0.50 TCGA-CR-6472-01 1 207925591 207925591 C T CD46 Missense_Mutation p.P12S 0.24 tolerated(0.84) benign(0.003) TCGA-CR-6472-01 1 211486481 211486481 G C RCOR3 Intron 0.22 TCGA-CR-6472-01 1 212161241 212161241 G T INTS7 Missense_Mutation p.F328L 0.21 tolerated(0.25) benign(0.002) TCGA-CR-6472-01 1 212964964 212964964 C T NSL1 Missense_Mutation p.E48K 0.22 deleterious(0) probably_damaging(0.961) TCGA-CR-6472-01 1 21903031 21903031 G A ALPL Silent p.L402L 0.42 TCGA-CR-6472-01 1 220809219 220809219 C G MARK1 Missense_Mutation p.Q441E 0.27 tolerated(0.27) benign(0.194) TCGA-CR-6472-01 1 22148095 22148095 G C LDLRAD2 Missense_Mutation p.A266P 0.37 tolerated(0.06) possibly_damaging(0.77) TCGA-CR-6472-01 1 222802603 222802603 G A MIA3 Missense_Mutation p.E681K 0.22 tolerated(0.08) benign(0.012) TCGA-CR-6472-01 1 223438081 223438081 C T SUSD4 Silent p.V205V 0.28 TCGA-CR-6472-01 1 225155383 225155383 G C DNAH14 Intron 0.23 TCGA-CR-6472-01 1 228399685 228399685 C G OBSCN Silent p.L67L 0.20 TCGA-CR-6472-01 1 232649841 232649843 CTC A SIPA1L2 Frame_Shift_Del p.E415Yfs*66 0.24 TCGA-CR-6472-01 1 233314809 233314809 C G PCNXL2 Intron 0.27 TCGA-CR-6472-01 1 234546228 234546228 G C TARBP1 Nonsense_Mutation p.S1252* 0.10 TCGA-CR-6472-01 1 236399689 236399689 G T ERO1LB Missense_Mutation p.S172Y 0.29 deleterious(0) probably_damaging(0.988) TCGA-CR-6472-01 1 237893557 237893557 C G RYR2 Intron 0.20 TCGA-CR-6472-01 1 247655066 247655066 C T OR2W5 RNA 0.05 TCGA-CR-6472-01 1 247751981 247751981 C T OR2G2 Missense_Mutation p.S107F 0.26 tolerated(0.93) benign(0.275) TCGA-CR-6472-01 1 27755376 27755376 C T WASF2 Missense_Mutation p.E9K 0.50 deleterious(0.02) unknown(0) TCGA-CR-6472-01 1 33145359 33145359 G C RBBP4 3'UTR 0.32 TCGA-CR-6472-01 1 34174890 34174890 A T CSMD2 Intron 0.31 TCGA-CR-6472-01 1 35921704 35921704 G A KIAA0319L Silent p.L522L 0.41 TCGA-CR-6472-01 1 36298161 36298161 G C AGO4 Missense_Mutation p.D457H 0.27 deleterious(0.03) benign(0.017) TCGA-CR-6472-01 1 39852945 39852945 G A MACF1 Missense_Mutation p.D2749N 0.38 benign(0.003) TCGA-CR-6472-01 1 39907972 39907972 G A MACF1 Missense_Mutation p.E4251K 0.31 probably_damaging(0.954) TCGA-CR-6472-01 1 41976891 41976904 TGAGCAGGGCCGGG - HIVEP3 Frame_Shift_Del p.P2147Sfs*12 0.22 TCGA-CR-6472-01 1 43903370 43903370 C T SZT2 Missense_Mutation p.S2075L 0.45 tolerated(0.47) benign(0.001) TCGA-CR-6472-01 1 47182007 47182007 G C EFCAB14 Silent p.L98L 0.33 TCGA-CR-6472-01 1 52256649 52256649 C T NRD1 Missense_Mutation p.D1060N 0.42 deleterious(0.04) benign(0.302) TCGA-CR-6472-01 1 53692756 53692756 G A MAGOH Silent p.F134F 0.27 TCGA-CR-6472-01 1 60538268 60538268 C G C1orf87 Missense_Mutation p.E16D 0.31 deleterious(0.02) benign(0.029) TCGA-CR-6472-01 1 62586850 62586850 C T INADL Intron 0.53 TCGA-CR-6472-01 1 66058502 66058502 A C LEPR Silent p.G219G 0.28 TCGA-CR-6472-01 1 6698379 6698379 C T DNAJC11 Silent p.Q433Q 0.53 TCGA-CR-6472-01 1 78204976 78204976 G C USP33 Missense_Mutation p.H140D 0.32 tolerated(0.62) benign(0.021) TCGA-CR-6472-01 1 86252129 86252129 G T COL24A1 Missense_Mutation p.P1323T 0.41 tolerated(0.16) benign(0.011) TCGA-CR-6472-01 1 89579735 89579735 G C GBP2 Missense_Mutation p.F371L 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-CR-6472-01 1 90179681 90179681 G C LRRC8C Missense_Mutation p.E518Q 0.35 deleterious(0.04) probably_damaging(0.994) TCGA-CR-6472-01 1 93649049 93649049 C G CCDC18 Missense_Mutation p.S98C 0.44 deleterious(0) probably_damaging(0.952) TCGA-CR-6472-01 1 94470994 94470994 C T ABCA4 Intron 0.45 TCGA-CR-6472-01 1 9777022 9777022 C G PIK3CD Missense_Mutation p.I262M 0.57 deleterious(0.02) possibly_damaging(0.87) TCGA-CR-6472-01 20 126135 126135 G C DEFB126 Missense_Mutation p.K46N 0.35 tolerated(0.38) benign(0.156) TCGA-CR-6472-01 20 1600649 1600649 C G SIRPB1 5'UTR 0.53 TCGA-CR-6472-01 20 18448199 18448199 G A POLR3F Missense_Mutation p.E17K 0.34 deleterious(0.03) benign(0.22) TCGA-CR-6472-01 20 20601168 20601168 C G RALGAPA2 Missense_Mutation p.R447T 0.39 tolerated(0.37) benign(0) TCGA-CR-6472-01 20 33297096 33297096 C G TP53INP2 Missense_Mutation p.P61A 0.50 tolerated(0.36) benign(0.009) TCGA-CR-6472-01 20 33862274 33862274 G A MMP24 Silent p.V600V 0.39 TCGA-CR-6472-01 20 35155433 35155433 G C DLGAP4 Nonstop_Mutation p.*990Sext*10 0.44 TCGA-CR-6472-01 20 3553417 3553417 C T ATRN Silent p.L637L 0.26 TCGA-CR-6472-01 20 42088733 42088733 G C SRSF6 Missense_Mutation p.E148Q 0.33 deleterious(0.03) probably_damaging(1) TCGA-CR-6472-01 20 42815224 42815224 G C JPH2 Missense_Mutation p.S41C 0.29 deleterious(0.02) probably_damaging(0.929) TCGA-CR-6472-01 20 43374746 43374746 G A KCNK15 Silent p.L65L 0.35 TCGA-CR-6472-01 20 43566728 43566728 G A PABPC1L Missense_Mutation p.D558N 0.39 tolerated(0.39) benign(0.002) TCGA-CR-6472-01 20 44433831 44433831 C G DNTTIP1 Missense_Mutation p.S217C 0.38 deleterious(0.01) possibly_damaging(0.866) TCGA-CR-6472-01 20 47733708 47733708 C G STAU1 Silent p.L529L 0.44 TCGA-CR-6472-01 20 52198855 52198855 G A ZNF217 Missense_Mutation p.L171F 0.33 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 20 56188387 56188387 C G ZBP1 Splice_Site p.X168_splice 0.41 TCGA-CR-6472-01 20 58571732 58571732 G A CDH26 Silent p.K645K 0.37 TCGA-CR-6472-01 20 61907878 61907878 G C ARFGAP1 Missense_Mutation p.E73Q 0.40 deleterious(0) benign(0.125) TCGA-CR-6472-01 20 61982264 61982264 A C CHRNA4 Missense_Mutation p.F167V 0.39 deleterious(0) possibly_damaging(0.812) TCGA-CR-6472-01 20 62168671 62168671 G A PTK6 5'UTR 0.35 TCGA-CR-6472-01 20 62837064 62837064 C G MYT1 Missense_Mutation p.S103C 0.30 possibly_damaging(0.525) TCGA-CR-6472-01 21 30359144 30359144 G C LTN1 Missense_Mutation p.Q98E 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-CR-6472-01 21 32492803 32492803 G C TIAM1 Silent p.L1553L 0.47 TCGA-CR-6472-01 21 32513499 32513499 G A TIAM1 Silent p.I1237I 0.42 TCGA-CR-6472-01 21 32513759 32513759 G A TIAM1 Missense_Mutation p.S1180F 0.32 deleterious(0.01) possibly_damaging(0.514) TCGA-CR-6472-01 21 32589957 32589957 G A TIAM1 Missense_Mutation p.S685F 0.35 deleterious(0.01) possibly_damaging(0.62) TCGA-CR-6472-01 21 34787221 34787221 C T IFNGR2 Nonsense_Mutation p.Q34* 0.47 TCGA-CR-6472-01 21 43508453 43508453 C G UMODL1 Nonsense_Mutation p.S218* 0.76 TCGA-CR-6472-01 21 43852254 43852254 G A UBASH3A Missense_Mutation p.E405K 0.33 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 21 46387037 46387037 C A FAM207A Silent p.L147L 0.26 TCGA-CR-6472-01 22 24034855 24034855 G A RGL4 Splice_Site p.X125_splice 0.34 TCGA-CR-6472-01 22 25150055 25150055 T G PIWIL3 Silent p.T301T 0.32 TCGA-CR-6472-01 22 27026412 27026412 G A CRYBA4 Silent p.P184P 0.50 TCGA-CR-6472-01 22 30366987 30367015 AGAGCCTTGTTGGACACTGAAGAAGGGAC - MTMR3 5'UTR 0.21 TCGA-CR-6472-01 22 36684376 36684376 G A MYH9 Silent p.D1618D 0.23 TCGA-CR-6472-01 22 36912642 36912642 C T EIF3D Nonsense_Mutation p.W363* 0.34 TCGA-CR-6472-01 22 37769912 37769912 G C ELFN2 Missense_Mutation p.L555V 0.51 deleterious(0) probably_damaging(0.998) TCGA-CR-6472-01 22 41253202 41253202 C A XPNPEP3 Nonsense_Mutation p.S6* 0.69 TCGA-CR-6472-01 22 42078461 42078461 C A NHP2L1 5'UTR 0.53 TCGA-CR-6472-01 22 42322147 42322147 G T TNFRSF13C Missense_Mutation p.R109S 0.40 tolerated(0.81) benign(0.02) TCGA-CR-6472-01 22 43831044 43831044 C G MPPED1 Missense_Mutation p.I105M 0.60 tolerated(0.13) benign(0.09) TCGA-CR-6472-01 22 50616191 50616191 C G PANX2 Missense_Mutation p.F350L 0.65 deleterious(0.01) possibly_damaging(0.758) TCGA-CR-6472-01 2 152507244 152507244 G A NEB Silent p.F2357F 0.55 TCGA-CR-6472-01 2 153573906 153573906 C T PRPF40A Missense_Mutation p.M16I 0.57 tolerated_low_confidence(0.07) benign(0.019) TCGA-CR-6472-01 2 163250937 163250937 C T KCNH7 Missense_Mutation p.R891K 0.59 tolerated(0.08) benign(0.003) TCGA-CR-6472-01 2 179365828 179365828 C T PLEKHA3 Nonsense_Mutation p.R234* 0.66 TCGA-CR-6472-01 2 179416824 179416824 G A TTN Missense_Mutation p.S30268L 0.60 TCGA-CR-6472-01 2 17946179 17946179 G C GEN1 Missense_Mutation p.E122Q 0.72 tolerated(0.05) possibly_damaging(0.889) TCGA-CR-6472-01 2 189932835 189932835 G C COL5A2 Missense_Mutation p.S436C 0.55 probably_damaging(0.987) TCGA-CR-6472-01 2 202003668 202003668 G A CFLAR Intron 0.39 TCGA-CR-6472-01 2 219229377 219229377 G A C2orf62 Silent p.Q219Q 0.69 TCGA-CR-6472-01 2 230643289 230643289 T C TRIP12 Missense_Mutation p.T1667A 0.42 tolerated(0.15) benign(0.002) TCGA-CR-6472-01 2 231742261 231742261 G A ITM2C Silent p.R236R 0.47 TCGA-CR-6472-01 2 233421129 233421129 G C EIF4E2 Missense_Mutation p.L8F 0.54 deleterious(0.01) probably_damaging(0.947) TCGA-CR-6472-01 2 24522802 24522802 C G ITSN2 Missense_Mutation p.R440S 0.75 deleterious(0) unknown(0) TCGA-CR-6472-01 2 24522843 24522843 C G ITSN2 Missense_Mutation p.E427Q 0.72 tolerated(0.08) unknown(0) TCGA-CR-6472-01 2 27712512 27712512 C T IFT172 Silent p.L3L 0.66 TCGA-CR-6472-01 2 33488459 33488459 G T LTBP1 Nonsense_Mutation p.E873* 0.31 TCGA-CR-6472-01 2 39262376 39262376 G C SOS1 Missense_Mutation p.L351V 0.24 deleterious(0.05) benign(0.169) TCGA-CR-6472-01 2 47596657 47596657 C T EPCAM Nonsense_Mutation p.Q5* 0.60 TCGA-CR-6472-01 2 48707126 48707126 C T PPP1R21 Missense_Mutation p.A430V 0.68 tolerated(0.2) benign(0.021) TCGA-CR-6472-01 2 69732794 69732794 C T AAK1 Missense_Mutation p.E726K 0.67 deleterious(0.01) possibly_damaging(0.782) TCGA-CR-6472-01 2 72562091 72562091 G A EXOC6B Silent p.F727F 0.59 TCGA-CR-6472-01 2 86276328 86276328 G C POLR1A Silent p.V810V 0.60 TCGA-CR-6472-01 2 97400156 97400156 C G LMAN2L Silent p.R138R 0.52 TCGA-CR-6472-01 3 10264363 10264363 C T IRAK2 Missense_Mutation p.H353Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 3 105377697 105377697 C G CBLB 3'UTR 0.35 TCGA-CR-6472-01 3 113724488 113724488 C G KIAA1407 Missense_Mutation p.E579Q 0.33 tolerated(0.06) benign(0.15) TCGA-CR-6472-01 3 118865466 118865466 G T C3orf30 Nonsense_Mutation p.E144* 0.34 TCGA-CR-6472-01 3 121258384 121258384 G C POLQ Missense_Mutation p.S176C 0.30 deleterious(0) possibly_damaging(0.874) TCGA-CR-6472-01 3 12545233 12545233 G A TSEN2 Missense_Mutation p.E261K 0.34 deleterious(0.02) benign(0.327) TCGA-CR-6472-01 3 126451938 126451938 C G CHCHD6 Missense_Mutation p.A95G 0.13 deleterious(0) probably_damaging(0.977) TCGA-CR-6472-01 3 127391827 127391827 C T ABTB1 5'UTR 0.40 TCGA-CR-6472-01 3 128979529 128979529 C G COPG1 Nonsense_Mutation p.S336* 0.41 TCGA-CR-6472-01 3 130293197 130293197 G A COL6A6 Silent p.L1125L 0.33 TCGA-CR-6472-01 3 132294631 132294631 C G ACAD11 Missense_Mutation p.K662N 0.27 deleterious(0) probably_damaging(0.926) TCGA-CR-6472-01 3 132394720 132394720 C G UBA5 Missense_Mutation p.P362A 0.42 tolerated(0.3) benign(0.002) TCGA-CR-6472-01 3 132423059 132423059 C G NPHP3 Missense_Mutation p.E503Q 0.47 tolerated(0.35) benign(0.064) TCGA-CR-6472-01 3 134327552 134327552 C G KY Missense_Mutation p.K343N 0.43 tolerated(0.33) benign(0.051) TCGA-CR-6472-01 3 142394998 142394998 G C PLS1 Splice_Site p.X122_splice 0.28 TCGA-CR-6472-01 3 151046746 151046746 G C P2RY13 Missense_Mutation p.S33C 0.42 deleterious(0) benign(0.266) TCGA-CR-6472-01 3 165548094 165548094 G A BCHE Missense_Mutation p.S243L 0.20 tolerated(0.23) benign(0.005) TCGA-CR-6472-01 3 169540507 169540507 G C LRRIQ4 Silent p.G266G 0.56 TCGA-CR-6472-01 3 172096154 172096154 G A FNDC3B Missense_Mutation p.E1035K 0.53 deleterious(0.01) benign(0.097) TCGA-CR-6472-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.50 deleterious(0.02) probably_damaging(0.959) TCGA-CR-6472-01 3 187447411 187447411 G C BCL6 Missense_Mutation p.P261R 0.31 deleterious(0) possibly_damaging(0.489) TCGA-CR-6472-01 3 195256617 195256617 C A PPP1R2 Nonsense_Mutation p.E70* 0.53 TCGA-CR-6472-01 3 19921070 19921070 G T EFHB 3'UTR 0.46 TCGA-CR-6472-01 3 23996052 23996052 C G NR1D2 Missense_Mutation p.S14C 0.39 deleterious(0) possibly_damaging(0.869) TCGA-CR-6472-01 3 27244013 27244013 T G NEK10 Missense_Mutation p.K709T 0.42 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 3 32031248 32031248 G C ZNF860 Missense_Mutation p.R226T 0.25 tolerated(0.09) probably_damaging(0.991) TCGA-CR-6472-01 3 32776347 32776347 C A CNOT10 Missense_Mutation p.L525I 0.35 tolerated(0.05) probably_damaging(0.999) TCGA-CR-6472-01 3 36884182 36884182 G A TRANK1 Silent p.F1693F 0.23 TCGA-CR-6472-01 3 48451107 48451107 G C PLXNB1 Missense_Mutation p.F1937L 0.29 deleterious(0) probably_damaging(0.927) TCGA-CR-6472-01 3 48699002 48699002 C G CELSR3 Missense_Mutation p.E356Q 0.33 deleterious(0.03) probably_damaging(0.939) TCGA-CR-6472-01 3 49152909 49152909 G C USP19 Missense_Mutation p.S617C 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-CR-6472-01 3 49155409 49155409 G A USP19 Missense_Mutation p.S90F 0.59 tolerated_low_confidence(0.1) benign(0.003) TCGA-CR-6472-01 3 49278740 49278740 C T CCDC36 Missense_Mutation p.P105S 0.31 tolerated(0.08) benign(0.344) TCGA-CR-6472-01 3 49929191 49929191 G A MST1R Missense_Mutation p.R1118C 0.34 deleterious(0) possibly_damaging(0.872) TCGA-CR-6472-01 3 73651507 73651507 C G PDZRN3 Missense_Mutation p.E306Q 0.37 tolerated(0.96) benign(0.088) TCGA-CR-6472-01 3 78737857 78737857 G T ROBO1 Missense_Mutation p.Q371K 0.43 tolerated(0.36) probably_damaging(0.983) TCGA-CR-6472-01 3 93646189 93646189 C G PROS1 Missense_Mutation p.E47Q 0.41 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 3 97439174 97439174 G C EPHA6 Missense_Mutation p.D952H 0.40 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 3 9984547 9984547 T C CRELD1 Missense_Mutation p.C262R 0.41 deleterious(0) probably_damaging(0.994) TCGA-CR-6472-01 4 100261734 100261734 C T ADH1C Missense_Mutation p.G321E 0.56 probably_damaging(0.998) TCGA-CR-6472-01 4 121957931 121957931 G A NDNF Nonsense_Mutation p.Q399* 0.51 TCGA-CR-6472-01 4 123814217 123814217 G A NUDT6 Silent p.C239C 0.04 TCGA-CR-6472-01 4 144354740 144354740 C T GAB1 Missense_Mutation p.S155F 0.60 tolerated(0.71) benign(0.002) TCGA-CR-6472-01 4 148867785 148867785 G A ARHGAP10 Missense_Mutation p.E441K 0.65 tolerated(0.19) possibly_damaging(0.722) TCGA-CR-6472-01 4 154315459 154315459 G A MND1 Missense_Mutation p.E108K 0.50 tolerated(0.35) benign(0.012) TCGA-CR-6472-01 4 155665794 155665794 G T LRAT Missense_Mutation p.A106S 0.69 deleterious(0.01) probably_damaging(0.997) TCGA-CR-6472-01 4 164050069 164050069 G A NAF1 Missense_Mutation p.H489Y 0.61 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CR-6472-01 4 170428916 170428916 C G NEK1 Missense_Mutation p.E621Q 0.58 deleterious(0.01) possibly_damaging(0.691) TCGA-CR-6472-01 4 186317996 186317996 C T ANKRD37 5'UTR 0.55 TCGA-CR-6472-01 4 186318030 186318030 C T ANKRD37 5'UTR 0.57 TCGA-CR-6472-01 4 62935975 62935975 C T LPHN3 Silent p.T1253T 0.50 TCGA-CR-6472-01 4 66467879 66467879 G C EPHA5 Silent p.L130L 0.65 TCGA-CR-6472-01 4 71024438 71024438 G C C4orf40 Missense_Mutation p.E157Q 0.79 tolerated(0.28) unknown(0) TCGA-CR-6472-01 4 72429528 72429529 - A SLC4A4 Intron 0.27 TCGA-CR-6472-01 5 108691708 108691708 C T PJA2 Missense_Mutation p.D558N 0.33 deleterious(0) possibly_damaging(0.677) TCGA-CR-6472-01 5 112137026 112137026 G C APC Missense_Mutation p.Q260H 0.29 possibly_damaging(0.492) TCGA-CR-6472-01 5 118968548 118968548 C G FAM170A Missense_Mutation p.S59C 0.35 deleterious(0) probably_damaging(0.986) TCGA-CR-6472-01 5 125918566 125918566 C T ALDH7A1 Missense_Mutation p.G165E 0.54 tolerated(0.29) benign(0.133) TCGA-CR-6472-01 5 132232368 132232368 C G AFF4 Missense_Mutation p.D652H 0.33 deleterious(0.03) probably_damaging(0.976) TCGA-CR-6472-01 5 134210097 134210097 G C TXNDC15 5'UTR 0.31 TCGA-CR-6472-01 5 140201501 140201501 C T PCDHA5 Silent p.I47I 0.45 TCGA-CR-6472-01 5 140201580 140201580 C T PCDHA5 Silent p.L74L 0.33 TCGA-CR-6472-01 5 140209500 140209500 G A PCDHA6 Silent p.S608S 0.31 TCGA-CR-6472-01 5 140532108 140532108 C G PCDHB6 Nonsense_Mutation p.S757* 0.39 TCGA-CR-6472-01 5 140710402 140710402 G A PCDHGA1 Missense_Mutation p.D51N 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.651) TCGA-CR-6472-01 5 140711728 140711728 G A PCDHGA1 Missense_Mutation p.E493K 0.27 deleterious_low_confidence(0.05) benign(0.33) TCGA-CR-6472-01 5 140782700 140782700 G T PCDHGA9 Nonsense_Mutation p.E61* 0.38 TCGA-CR-6472-01 5 140812070 140812070 G A PCDHGA12 Missense_Mutation p.A582T 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.775) TCGA-CR-6472-01 5 150512081 150512081 C T ANXA6 Missense_Mutation p.R231Q 0.22 tolerated(0.13) benign(0.23) TCGA-CR-6472-01 5 17275436 17275436 G A BASP1 Silent p.P37P 0.52 TCGA-CR-6472-01 5 32712159 32712159 C T NPR3 Silent p.L93L 0.28 TCGA-CR-6472-01 5 43161724 43161724 A G ZNF131 Intron 0.33 TCGA-CR-6472-01 5 49694979 49694979 G A EMB 3'UTR 0.29 TCGA-CR-6472-01 5 5186271 5186271 G C ADAMTS16 Silent p.L290L 0.41 TCGA-CR-6472-01 5 76715710 76715710 G A PDE8B Missense_Mutation p.E750K 0.36 tolerated(0.86) possibly_damaging(0.852) TCGA-CR-6472-01 5 95087996 95087996 G A RHOBTB3 Silent p.K208K 0.31 TCGA-CR-6472-01 6 110778028 110778028 C G SLC22A16 Missense_Mutation p.Q82H 0.33 tolerated(0.73) benign(0) TCGA-CR-6472-01 6 111288781 111288781 C G GTF3C6 Missense_Mutation p.L144V 0.33 tolerated(0.21) benign(0.031) TCGA-CR-6472-01 6 116599934 116599934 G C TSPYL1 Missense_Mutation p.P354A 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-CR-6472-01 6 117150061 117150061 C G GPRC6A Missense_Mutation p.G39A 0.40 deleterious(0.01) possibly_damaging(0.86) TCGA-CR-6472-01 6 123869710 123869710 C T TRDN Missense_Mutation p.D94N 0.50 deleterious_low_confidence(0) unknown(0) TCGA-CR-6472-01 6 131999049 131999049 C G ENPP3 Missense_Mutation p.S327C 0.34 deleterious(0) possibly_damaging(0.897) TCGA-CR-6472-01 6 136599330 136599330 G A BCLAF1 Missense_Mutation p.S230L 0.24 deleterious(0.01) possibly_damaging(0.504) TCGA-CR-6472-01 6 137245833 137245833 G C SLC35D3 Nonstop_Mutation p.*417Sext*17 0.41 TCGA-CR-6472-01 6 138428475 138428475 C A PERP Translation_Start_Site p.M1? 0.34 deleterious(0) possibly_damaging(0.838) TCGA-CR-6472-01 6 146264599 146264599 C T SHPRH Missense_Mutation p.D640N 0.32 tolerated_low_confidence(0.24) benign(0.099) TCGA-CR-6472-01 6 150052833 150052833 G C NUP43 Missense_Mutation p.L277V 0.36 deleterious(0) probably_damaging(0.991) TCGA-CR-6472-01 6 151152198 151152198 G C PLEKHG1 Missense_Mutation p.E651Q 0.37 tolerated(0.28) probably_damaging(0.94) TCGA-CR-6472-01 6 152644705 152644705 G C SYNE1 Silent p.T5275T 0.35 TCGA-CR-6472-01 6 15410497 15410497 C T JARID2 Missense_Mutation p.S75L 0.80 deleterious_low_confidence(0.01) benign(0.035) TCGA-CR-6472-01 6 159084253 159084253 C G SYTL3 5'UTR 0.14 TCGA-CR-6472-01 6 170102948 170102948 G A C6orf120 Missense_Mutation p.M131I 0.33 tolerated(0.07) benign(0.136) TCGA-CR-6472-01 6 170626882 170626882 C G FAM120B Nonsense_Mutation p.S135* 0.35 TCGA-CR-6472-01 6 25450578 25450578 C T LRRC16A Nonsense_Mutation p.Q161* 0.53 TCGA-CR-6472-01 6 26156615 26156615 C T HIST1H1E 5'UTR 0.58 TCGA-CR-6472-01 6 27799116 27799116 C A HIST1H4K Nonsense_Mutation p.E64* 0.34 TCGA-CR-6472-01 6 29394966 29394966 G C OR11A1 Silent p.L151L 0.45 TCGA-CR-6472-01 6 32815407 32815407 G A TAP1 Nonsense_Mutation p.Q656* 0.59 TCGA-CR-6472-01 6 33660555 33660555 C T ITPR3 Silent p.I2503I 0.49 TCGA-CR-6472-01 6 39159321 39159321 C T KCNK5 Missense_Mutation p.S282N 0.61 tolerated(0.56) benign(0.001) TCGA-CR-6472-01 6 44268239 44268239 C T AARS2 3'UTR 0.71 TCGA-CR-6472-01 6 52993467 52993467 G A GCM1 Missense_Mutation p.S283F 0.31 tolerated(0.72) possibly_damaging(0.467) TCGA-CR-6472-01 6 82927733 82927733 C G IBTK Missense_Mutation p.G457A 0.39 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 6 83830475 83830475 G A DOPEY1 Missense_Mutation p.R355H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 6 99856061 99856061 C T PNISR Missense_Mutation p.E254K 0.44 deleterious(0) probably_damaging(0.995) TCGA-CR-6472-01 7 100246206 100246211 GATGTC - ACTL6B In_Frame_Del p.D213_I214del 0.52 TCGA-CR-6472-01 7 100488803 100488803 C T ACHE Silent p.L570L 0.47 TCGA-CR-6472-01 7 102045060 102045060 G C PRKRIP1 Missense_Mutation p.E108Q 0.38 deleterious(0.02) possibly_damaging(0.777) TCGA-CR-6472-01 7 104703989 104704002 ACATGATGATGGAT - KMT2E Frame_Shift_Del p.D129Lfs*3 0.22 TCGA-CR-6472-01 7 107678026 107678026 G C LAMB4 Missense_Mutation p.P1496A 0.32 deleterious(0.03) probably_damaging(1) TCGA-CR-6472-01 7 116918349 116918349 T G WNT2 Missense_Mutation p.T315P 0.27 deleterious(0) probably_damaging(0.998) TCGA-CR-6472-01 7 127240257 127240257 G A FSCN3 Missense_Mutation p.G434E 0.32 tolerated(0.06) probably_damaging(0.979) TCGA-CR-6472-01 7 135292103 135292103 C G NUP205 Missense_Mutation p.A1060G 0.52 deleterious(0.04) benign(0.062) TCGA-CR-6472-01 7 142561964 142561964 G A EPHB6 Missense_Mutation p.E136K 0.37 deleterious(0) benign(0.278) TCGA-CR-6472-01 7 143104760 143104760 C T EPHA1 Missense_Mutation p.D32N 0.40 deleterious(0) probably_damaging(0.999) TCGA-CR-6472-01 7 143807003 143807003 G C OR2A2 Missense_Mutation p.E110Q 0.31 deleterious(0) probably_damaging(0.974) TCGA-CR-6472-01 7 148312598 148312598 G A C7orf33 3'UTR 0.40 TCGA-CR-6472-01 7 17379231 17379231 C G AHR Missense_Mutation p.F594L 0.40 tolerated(0.33) benign(0.008) TCGA-CR-6472-01 7 34997615 34997615 G A DPY19L1 Missense_Mutation p.S314F 0.17 deleterious(0) possibly_damaging(0.803) TCGA-CR-6472-01 7 4247913 4247913 G A SDK1 Silent p.Q1799Q 0.29 TCGA-CR-6472-01 7 44555448 44555448 G A NPC1L1 Silent p.G1277G 0.33 TCGA-CR-6472-01 7 4862113 4862113 C T RADIL Nonsense_Mutation p.W509* 0.21 TCGA-CR-6472-01 7 51096582 51096582 C A COBL Silent p.G737G 0.34 TCGA-CR-6472-01 7 65419170 65419170 C G VKORC1L1 Missense_Mutation p.F138L 0.45 tolerated(0.14) benign(0.116) TCGA-CR-6472-01 7 65439419 65439419 G A GUSB Silent p.F418F 0.44 TCGA-CR-6472-01 7 74148262 74148262 C G GTF2I Intron 0.40 TCGA-CR-6472-01 7 75630281 75630281 G T STYXL1 Missense_Mutation p.S246Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-CR-6472-01 7 92131290 92131290 C G PEX1 Missense_Mutation p.G777A 0.38 deleterious(0) benign(0.003) TCGA-CR-6472-01 7 94230021 94230021 G T SGCE Nonsense_Mutation p.S325* 0.37 TCGA-CR-6472-01 7 99674971 99674971 G C ZNF3 Missense_Mutation p.Q4E 0.35 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-CR-6472-01 7 99754719 99754719 G A C7orf43 Silent p.V281V 0.26 TCGA-CR-6472-01 7 99755503 99755503 G A C7orf43 Missense_Mutation p.S157L 0.26 deleterious(0) possibly_damaging(0.765) TCGA-CR-6472-01 7 99799275 99799275 C G GATS 3'UTR 0.23 TCGA-CR-6472-01 8 10102704 10102704 C T MSRA Missense_Mutation p.S101L 0.36 deleterious(0.04) benign(0.102) TCGA-CR-6472-01 8 109462710 109462710 G A EMC2 Missense_Mutation p.D70N 0.35 tolerated(0.1) benign(0.019) TCGA-CR-6472-01 8 11706668 11706668 G A CTSB Silent p.F111F 0.21 TCGA-CR-6472-01 8 124042888 124042888 G C DERL1 Silent p.V74V 0.30 TCGA-CR-6472-01 8 125078776 125078776 G A FER1L6 Silent p.L1221L 0.06 TCGA-CR-6472-01 8 133855066 133855066 G A PHF20L1 Missense_Mutation p.M898I 0.29 tolerated(0.41) benign(0) TCGA-CR-6472-01 8 143763453 143763453 G A PSCA Missense_Mutation p.C83Y 0.36 deleterious(0) probably_damaging(1) TCGA-CR-6472-01 8 144776267 144776267 G A ZNF707 Missense_Mutation p.R228H 0.42 tolerated(0.09) benign(0.397) TCGA-CR-6472-01 8 144877604 144877604 C G SCRIB Missense_Mutation p.E1234Q 0.29 possibly_damaging(0.779) TCGA-CR-6472-01 8 146076069 146076069 C G COMMD5 Missense_Mutation p.E219Q 0.31 tolerated(0.24) benign(0.01) TCGA-CR-6472-01 8 27394310 27394310 G A EPHX2 Missense_Mutation p.E394K 0.29 deleterious(0) probably_damaging(0.995) TCGA-CR-6472-01 8 27898624 27898624 C T NUGGC Missense_Mutation p.E519K 0.67 deleterious(0.04) benign(0.039) TCGA-CR-6472-01 8 27967950 27967950 G C ELP3 Missense_Mutation p.E153Q 0.35 tolerated(0.09) benign(0.065) TCGA-CR-6472-01 8 40011187 40011187 G A C8orf4 Missense_Mutation p.E46K 0.39 tolerated(0.2) benign(0.049) TCGA-CR-6472-01 8 48805814 48805814 G A PRKDC Missense_Mutation p.R1244W 0.45 possibly_damaging(0.764) TCGA-CR-6472-01 8 48885504 48885504 G C MCM4 Missense_Mutation p.Q672H 0.31 tolerated(0.05) benign(0.021) TCGA-CR-6472-01 8 80677568 80677568 G A HEY1 Missense_Mutation p.S261L 0.50 tolerated(0.05) probably_damaging(0.998) TCGA-CR-6472-01 8 95709092 95709092 G C ESRP1 Missense_Mutation p.D662H 0.23 deleterious(0) possibly_damaging(0.671) TCGA-CR-6472-01 8 95869113 95869113 C T INTS8 Missense_Mutation p.H621Y 0.38 tolerated(1) benign(0) TCGA-CR-6472-01 9 109687761 109687761 C G ZNF462 Nonsense_Mutation p.S523* 0.47 TCGA-CR-6472-01 9 123808549 123808549 G C C5 Missense_Mutation p.P60A 0.56 tolerated(0.13) possibly_damaging(0.545) TCGA-CR-6472-01 9 140007428 140007428 G A DPP7 Missense_Mutation p.P283S 0.70 tolerated(0.89) benign(0.016) TCGA-CR-6472-01 9 18777191 18777191 G A ADAMTSL1 Silent p.P988P 0.44 TCGA-CR-6472-01 9 32541770 32541770 G A TOPORS Missense_Mutation p.S918F 0.59 deleterious_low_confidence(0.05) unknown(0) TCGA-CR-6472-01 9 32630255 32630255 C A TAF1L Missense_Mutation p.D1775Y 0.50 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-CR-6472-01 9 34610763 34610763 G T RPP25L 3'UTR 0.27 TCGA-CR-6472-01 9 35660595 35660595 G C CCDC107 Missense_Mutation p.E121Q 0.34 deleterious(0) probably_damaging(0.969) TCGA-CR-6472-01 9 36162499 36162499 G A GLIPR2 Missense_Mutation p.V149I 0.58 deleterious(0.03) benign(0.297) TCGA-CR-6472-01 9 40772752 40772752 G C ZNF658 Silent p.L841L 0.17 TCGA-CR-6472-01 9 97062208 97062208 C A ZNF169 Nonsense_Mutation p.S123* 0.55 TCGA-CR-6472-01 X 11204461 11204461 G C ARHGAP6 Missense_Mutation p.Q390E 0.74 tolerated(0.96) benign(0.005) TCGA-CR-6472-01 X 135430993 135430993 G A GPR112 Missense_Mutation p.D1710N 0.78 tolerated(0.41) benign(0.012) TCGA-CR-6472-01 X 153296808 153296808 G A MECP2 Silent p.F169F 0.80 TCGA-CR-6472-01 X 153580937 153580937 G A FLNA Silent p.L2162L 0.64 TCGA-CR-6472-01 X 21900801 21900801 G C MBTPS2 3'UTR 0.78 TCGA-CR-6472-01 X 40456555 40456555 G C ATP6AP2 Missense_Mutation p.E119Q 0.63 tolerated(0.08) benign(0.051) TCGA-CR-6472-01 X 40496291 40496291 C G CXorf38 Missense_Mutation p.E197Q 0.75 tolerated(0.06) probably_damaging(0.982) TCGA-CR-6472-01 X 53654387 53654387 C T HUWE1 Missense_Mutation p.G488E 0.69 possibly_damaging(0.569) TCGA-CR-6472-01 X 69496305 69496305 C G ARR3 Missense_Mutation p.S123C 0.77 deleterious(0) probably_damaging(0.997) TCGA-CR-6473-01 10 101997927 101997927 C T CWF19L1 Missense_Mutation p.G369E 0.34 deleterious(0) possibly_damaging(0.665) TCGA-CR-6473-01 10 104678631 104678631 G C CNNM2 Missense_Mutation p.E132Q 0.48 tolerated(0.19) benign(0.004) TCGA-CR-6473-01 10 11997456 11997456 T - UPF2 Frame_Shift_Del p.G876Efs*97 0.29 TCGA-CR-6473-01 10 124380632 124380632 G T DMBT1 Missense_Mutation p.V1653L 0.39 deleterious(0.04) possibly_damaging(0.657) TCGA-CR-6473-01 10 56138640 56138640 C T PCDH15 Missense_Mutation p.E74K 0.32 tolerated(0.05) possibly_damaging(0.573) TCGA-CR-6473-01 10 75035242 75035242 C G TTC18 Missense_Mutation p.E949Q 0.49 tolerated(0.06) benign(0.109) TCGA-CR-6473-01 11 14632514 14632514 T A PSMA1 Nonsense_Mutation p.K7* 0.30 TCGA-CR-6473-01 11 17793798 17793798 A G KCNC1 Missense_Mutation p.N386S 0.38 tolerated(0.55) probably_damaging(0.999) TCGA-CR-6473-01 11 18359808 18359808 C G GTF2H1 Missense_Mutation p.S167C 0.44 deleterious(0) probably_damaging(0.984) TCGA-CR-6473-01 11 19261718 19261718 T C E2F8 5'UTR 0.33 TCGA-CR-6473-01 11 6190885 6190885 G A OR52B2 Silent p.L224L 0.41 TCGA-CR-6473-01 12 106751632 106751632 C T POLR3B 5'UTR 0.36 TCGA-CR-6473-01 12 121175211 121175211 C T ACADS Missense_Mutation p.A138V 0.37 deleterious(0.02) benign(0.037) TCGA-CR-6473-01 12 123344617 123344617 T C HIP1R Missense_Mutation p.L830P 0.17 deleterious(0) probably_damaging(1) TCGA-CR-6473-01 12 32458713 32458713 T A BICD1 Missense_Mutation p.I221N 0.39 tolerated(0.28) benign(0.189) TCGA-CR-6473-01 12 42745801 42745801 G A PPHLN1 Missense_Mutation p.E63K 0.57 tolerated(0.19) benign(0.11) TCGA-CR-6473-01 12 4919430 4919430 C T KCNA6 Missense_Mutation p.R75C 0.49 deleterious(0) probably_damaging(0.957) TCGA-CR-6473-01 12 49436602 49436602 C A KMT2D Nonsense_Mutation p.E1902* 0.49 TCGA-CR-6473-01 12 53005099 53005099 C G KRT73 Missense_Mutation p.Q333H 0.47 deleterious(0) probably_damaging(1) TCGA-CR-6473-01 13 100635350 100635350 C T ZIC2 Silent p.F344F 0.38 TCGA-CR-6473-01 13 20277482 20277482 G C PSPC1 Missense_Mutation p.Q469E 0.34 deleterious(0.04) benign(0.002) TCGA-CR-6473-01 13 32972674 32972674 G A BRCA2 Missense_Mutation p.E3342K 0.27 deleterious(0) probably_damaging(0.999) TCGA-CR-6473-01 14 102509067 102509067 C T DYNC1H1 Silent p.P4165P 0.47 TCGA-CR-6473-01 14 21216174 21216174 C T EDDM3A Silent p.I145I 0.46 TCGA-CR-6473-01 14 21216202 21216202 C T EDDM3A 3'UTR 0.36 TCGA-CR-6473-01 14 44975037 44975037 C T FSCB Missense_Mutation p.R385Q 0.35 tolerated(1) benign(0.001) TCGA-CR-6473-01 14 71267584 71267584 C T MAP3K9 Missense_Mutation p.R207K 0.43 tolerated(0.39) benign(0.004) TCGA-CR-6473-01 14 74125657 74125657 C T DNAL1 Silent p.C50C 0.40 TCGA-CR-6473-01 15 40259747 40259747 C T EIF2AK4 Missense_Mutation p.A407V 0.44 deleterious(0.02) benign(0.008) TCGA-CR-6473-01 15 74043429 74043429 C T C15orf59 Missense_Mutation p.D15N 0.42 tolerated(0.41) benign(0.011) TCGA-CR-6473-01 15 74738327 74738327 C T UBL7 3'UTR 0.18 TCGA-CR-6473-01 16 53404765 53404765 A G RP11-44F14.1 RNA 0.85 TCGA-CR-6473-01 16 57063689 57063689 C T NLRC5 Missense_Mutation p.R750W 0.50 deleterious(0) benign(0.39) TCGA-CR-6473-01 16 67709163 67709163 G C GFOD2 Missense_Mutation p.I351M 0.69 deleterious(0) probably_damaging(0.928) TCGA-CR-6473-01 16 84132744 84132744 G A MBTPS1 Missense_Mutation p.A112V 0.13 tolerated(0.29) benign(0.001) TCGA-CR-6473-01 17 10424679 10424679 C T MYH2 Missense_Mutation p.R1915Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-CR-6473-01 17 27382170 27382170 C A PIPOX Missense_Mutation p.S299R 0.11 tolerated(0.49) benign(0.005) TCGA-CR-6473-01 17 35771469 35771469 C T TADA2A Missense_Mutation p.P6L 0.43 tolerated_low_confidence(0.18) benign(0) TCGA-CR-6473-01 17 43246353 43246353 C G HEXIM2 Intron 0.27 TCGA-CR-6473-01 17 67153022 67153022 G C ABCA10 Missense_Mutation p.L1136V 0.53 deleterious(0) probably_damaging(0.94) TCGA-CR-6473-01 17 67171572 67171572 C T ABCA10 Missense_Mutation p.G951D 0.04 deleterious(0) possibly_damaging(0.648) TCGA-CR-6473-01 17 73661241 73661241 C T RECQL5 Missense_Mutation p.V48I 0.24 deleterious(0.03) probably_damaging(0.992) TCGA-CR-6473-01 18 13826656 13826656 C T MC5R Missense_Mutation p.R298C 0.43 deleterious(0.01) benign(0.038) TCGA-CR-6473-01 19 10473005 10473005 C T TYK2 Missense_Mutation p.G535D 0.07 tolerated(0.07) benign(0.027) TCGA-CR-6473-01 19 11657661 11657661 C A CNN1 Silent p.G89G 0.10 TCGA-CR-6473-01 19 35512474 35512474 C T GRAMD1A Missense_Mutation p.S515L 0.41 tolerated(0.07) benign(0.407) TCGA-CR-6473-01 19 36245020 36245020 C T LIN37 Missense_Mutation p.P183S 0.46 tolerated(0.14) probably_damaging(0.996) TCGA-CR-6473-01 19 39330892 39330892 G A HNRNPL Silent p.Y359Y 0.50 TCGA-CR-6473-01 19 43763286 43763286 C T PSG9 Silent p.P237P 0.36 TCGA-CR-6473-01 19 4793183 4793183 G A FEM1A Silent p.A439A 0.37 TCGA-CR-6473-01 19 56969527 56969527 G T ZNF667 Missense_Mutation p.P84T 0.07 tolerated(0.15) benign(0.005) TCGA-CR-6473-01 19 9083519 9083519 C T MUC16 Missense_Mutation p.E2766K 0.39 unknown(0) TCGA-CR-6473-01 19 9084696 9084696 C T MUC16 Silent p.L2373L 0.46 TCGA-CR-6473-01 19 9085596 9085596 C T MUC16 Silent p.L2073L 0.38 TCGA-CR-6473-01 19 9085982 9085982 C T MUC16 Missense_Mutation p.E1945K 0.42 unknown(0) TCGA-CR-6473-01 19 9086220 9086220 C G MUC16 Missense_Mutation p.L1865F 0.41 unknown(0) TCGA-CR-6473-01 19 9086743 9086743 C T MUC16 Missense_Mutation p.R1691K 0.49 unknown(0) TCGA-CR-6473-01 19 9086890 9086890 C A MUC16 Missense_Mutation p.G1642V 0.37 unknown(0) TCGA-CR-6473-01 19 9087590 9087590 C G MUC16 Missense_Mutation p.E1409Q 0.41 unknown(0) TCGA-CR-6473-01 1 152080007 152080007 G A TCHH Missense_Mutation p.R1896C 0.53 possibly_damaging(0.689) TCGA-CR-6473-01 1 152128845 152128845 C G RPTN Missense_Mutation p.E244Q 0.46 tolerated(0.05) benign(0.094) TCGA-CR-6473-01 1 152285143 152285143 C T FLG Missense_Mutation p.R740Q 0.43 benign(0.134) TCGA-CR-6473-01 1 172558719 172558719 A G SUCO Silent p.P826P 0.17 TCGA-CR-6473-01 1 197069707 197069707 G A ASPM Missense_Mutation p.H2892Y 0.48 tolerated(0.94) benign(0.086) TCGA-CR-6473-01 1 32829615 32829616 AA - TSSK3 Frame_Shift_Del p.K190Rfs*2 0.36 TCGA-CR-6473-01 1 57252852 57252852 C T C1orf168 Missense_Mutation p.E317K 0.44 tolerated(0.12) benign(0.023) TCGA-CR-6473-01 20 31379433 31379433 G A DNMT3B Silent p.L280L 0.11 TCGA-CR-6473-01 20 31651460 31651460 G A BPIFB3 Missense_Mutation p.E211K 0.14 tolerated(0.07) possibly_damaging(0.832) TCGA-CR-6473-01 22 19346902 19346902 C T HIRA Missense_Mutation p.E731K 0.52 tolerated(0.08) benign(0.11) TCGA-CR-6473-01 22 20103246 20103246 C T TRMT2A Silent p.K219K 0.33 TCGA-CR-6473-01 22 23256456 23256456 G A IGLJ5 Missense_Mutation p.E17K 0.34 unknown(0) TCGA-CR-6473-01 22 26829615 26829615 G C ASPHD2 Missense_Mutation p.D12H 0.34 deleterious_low_confidence(0.02) benign(0) TCGA-CR-6473-01 22 43206867 43206867 G T ARFGAP3 Missense_Mutation p.T383N 0.41 tolerated(0.31) benign(0.001) TCGA-CR-6473-01 22 47393590 47393590 G A TBC1D22A Missense_Mutation p.V396M 0.44 tolerated(0.15) probably_damaging(0.984) TCGA-CR-6473-01 2 130737596 130737596 G A RAB6C 5'UTR 0.32 TCGA-CR-6473-01 2 136399147 136399147 C G R3HDM1 Missense_Mutation p.L421V 0.42 deleterious(0.04) probably_damaging(0.997) TCGA-CR-6473-01 2 1459985 1459985 A G TPO Silent p.K250K 0.36 TCGA-CR-6473-01 2 167143021 167143021 C T SCN9A Missense_Mutation p.R476K 0.44 tolerated(0.13) possibly_damaging(0.812) TCGA-CR-6473-01 2 185801739 185801740 - A ZNF804A Frame_Shift_Ins p.N541Kfs*2 0.34 TCGA-CR-6473-01 2 196602680 196602680 G A DNAH7 Nonsense_Mutation p.R4014* 0.44 TCGA-CR-6473-01 2 202430560 202430560 G A ALS2CR11 Missense_Mutation p.A290V 0.31 deleterious(0) probably_damaging(0.99) TCGA-CR-6473-01 2 220396543 220396543 C T ASIC4 Missense_Mutation p.R343W 0.38 tolerated(0.18) probably_damaging(0.96) TCGA-CR-6473-01 2 43871918 43871918 G A PLEKHH2 Missense_Mutation p.E36K 0.42 deleterious(0.03) benign(0.437) TCGA-CR-6473-01 2 89513043 89513043 A G IGKV1-27 Silent p.A72A 0.43 TCGA-CR-6473-01 2 97274403 97274403 T C KANSL3 Splice_Site p.X529_splice 0.40 TCGA-CR-6473-01 2 97543732 97543732 C T FAM178B Silent p.T634T 0.36 TCGA-CR-6473-01 2 99721848 99721848 C G TSGA10 Missense_Mutation p.E145Q 0.37 deleterious(0.01) possibly_damaging(0.873) TCGA-CR-6473-01 3 111637948 111637948 A T PHLDB2 Missense_Mutation p.R583S 0.25 deleterious(0.04) benign(0.011) TCGA-CR-6473-01 3 124053163 124053163 C T KALRN Missense_Mutation p.P488S 0.26 tolerated(0.31) benign(0.343) TCGA-CR-6473-01 3 18391090 18391090 G T SATB1 Missense_Mutation p.P654T 0.85 deleterious(0.04) benign(0.439) TCGA-CR-6473-01 3 190026161 190026161 G A CLDN1 Silent p.L181L 0.15 TCGA-CR-6473-01 3 193068904 193068904 G A ATP13A5 Silent p.I231I 0.34 TCGA-CR-6473-01 3 196657755 196657755 G C SENP5 Missense_Mutation p.R743S 0.27 deleterious(0) probably_damaging(0.999) TCGA-CR-6473-01 3 40457535 40457535 G T ENTPD3 Nonsense_Mutation p.E268* 0.76 TCGA-CR-6473-01 3 49149394 49149394 G A USP19 Silent p.A949A 0.68 TCGA-CR-6473-01 3 52720819 52720819 T C GNL3 Silent p.H16H 0.71 TCGA-CR-6473-01 3 52825552 52825552 C T ITIH1 Silent p.I838I 0.81 TCGA-CR-6473-01 3 53376252 53376252 T C DCP1A Missense_Mutation p.M75V 0.88 deleterious(0.02) benign(0.306) TCGA-CR-6473-01 3 9877030 9877030 C T TTLL3 Nonsense_Mutation p.R869* 0.79 TCGA-CR-6473-01 4 158254056 158254056 G A GRIA2 Missense_Mutation p.R323Q 0.39 deleterious(0.03) possibly_damaging(0.841) TCGA-CR-6473-01 4 164247769 164247769 G A NPY1R 5'UTR 0.60 TCGA-CR-6473-01 4 56841014 56841014 A G CEP135 Missense_Mutation p.E451G 0.40 deleterious(0) probably_damaging(0.999) TCGA-CR-6473-01 5 126206381 126206381 G C MARCH3 Missense_Mutation p.P236A 0.29 tolerated(0.19) benign(0.007) TCGA-CR-6473-01 5 136974777 136974777 G A KLHL3 Missense_Mutation p.R362W 0.08 deleterious(0) probably_damaging(1) TCGA-CR-6473-01 5 153429537 153429537 G A MFAP3 Nonsense_Mutation p.W85* 0.35 TCGA-CR-6473-01 5 71654182 71654182 G A PTCD2 Silent p.T365T 0.58 TCGA-CR-6473-01 6 116756747 116756747 C T DSE Intron 0.86 TCGA-CR-6473-01 6 160469544 160469544 C T IGF2R Missense_Mutation p.S828L 0.76 deleterious(0) possibly_damaging(0.686) TCGA-CR-6473-01 6 26448955 26448955 G A BTN3A3 Splice_Site p.X313_splice 0.41 TCGA-CR-6473-01 6 29365090 29365090 C G OR12D2 Missense_Mutation p.A205G 0.39 tolerated(0.73) benign(0.03) TCGA-CR-6473-01 6 42016446 42016446 G T TAF8 5'Flank 0.58 TCGA-CR-6473-01 6 43476039 43476039 G C LRRC73 Missense_Mutation p.L185V 0.29 deleterious(0.01) benign(0.154) TCGA-CR-6473-01 7 149473162 149473162 C T ZNF467 5'Flank 0.50 TCGA-CR-6473-01 7 31890345 31890345 G A PDE1C Missense_Mutation p.T314M 0.75 deleterious(0) probably_damaging(0.996) TCGA-CR-6473-01 8 67925256 67925256 C T PPP1R42 Silent p.E124E 0.29 TCGA-CR-6473-01 9 134340154 134340154 C T PRRC2B Missense_Mutation p.S470L 0.15 tolerated(0.12) benign(0.002) TCGA-CR-6473-01 X 109310602 109310602 C T TMEM164 Missense_Mutation p.R140W 0.39 deleterious(0.01) benign(0.008) TCGA-CR-6473-01 X 122532519 122532519 G A GRIA3 Silent p.L315L 0.48 TCGA-CR-6473-01 X 153214697 153214697 T G HCFC1 3'UTR 0.32 TCGA-CR-6474-01 10 120917410 120917410 G A SFXN4 Silent p.F148F 0.12 TCGA-CR-6474-01 10 129907526 129907526 C G MKI67 Missense_Mutation p.D860H 0.09 tolerated(0.1) probably_damaging(0.921) TCGA-CR-6474-01 10 131761669 131761669 C A EBF3 Nonsense_Mutation p.E85* 0.17 TCGA-CR-6474-01 10 26482144 26482144 A T MYO3A Missense_Mutation p.K1483N 0.09 tolerated_low_confidence(0.16) benign(0.347) TCGA-CR-6474-01 10 7423850 7423850 G C SFMBT2 Missense_Mutation p.T4S 0.33 tolerated_low_confidence(0.8) benign(0) TCGA-CR-6474-01 11 1028716 1028716 G T MUC6 Silent p.L507L 0.17 TCGA-CR-6474-01 11 40137506 40137506 T G LRRC4C Silent p.R113R 0.26 TCGA-CR-6474-01 11 56258421 56258421 G T OR5M8 Missense_Mutation p.F142L 0.18 tolerated(0.74) benign(0) TCGA-CR-6474-01 11 61196680 61196680 T A CPSF7 Missense_Mutation p.I53L 0.13 tolerated(0.71) benign(0.001) TCGA-CR-6474-01 11 62655847 62655847 G T SLC3A2 Silent p.R526R 0.23 TCGA-CR-6474-01 12 25308336 25308336 C A CASC1 Missense_Mutation p.R70M 0.25 deleterious(0) probably_damaging(0.998) TCGA-CR-6474-01 12 50571764 50571764 C T LIMA1 Missense_Mutation p.G456S 0.04 deleterious(0.01) possibly_damaging(0.701) TCGA-CR-6474-01 12 88535027 88535027 G A CEP290 Missense_Mutation p.R20C 0.33 possibly_damaging(0.685) TCGA-CR-6474-01 13 32653003 32653003 C A FRY Missense_Mutation p.P35T 0.14 tolerated_low_confidence(0.18) benign(0.003) TCGA-CR-6474-01 14 106306754 106306754 G A IGHD Missense_Mutation p.H359Y 0.17 deleterious(0) probably_damaging(1) TCGA-CR-6474-01 14 23874010 23874010 C A MYH6 Missense_Mutation p.K184N 0.10 deleterious(0) probably_damaging(0.985) TCGA-CR-6474-01 14 72152344 72152344 A T SIPA1L1 Missense_Mutation p.R1124W 0.16 deleterious(0.01) possibly_damaging(0.533) TCGA-CR-6474-01 15 33358886 33358886 T A FMN1 Silent p.T400T 0.19 TCGA-CR-6474-01 15 34648621 34648621 A G NUTM1 Silent p.L776L 0.15 TCGA-CR-6474-01 15 39884784 39884784 G A THBS1 Missense_Mutation p.D850N 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-CR-6474-01 15 39884823 39884823 G A THBS1 Missense_Mutation p.D863N 0.26 deleterious(0) probably_damaging(0.999) TCGA-CR-6474-01 15 59499449 59499449 G A LDHAL6B Missense_Mutation p.E104K 0.12 tolerated(0.08) possibly_damaging(0.786) TCGA-CR-6474-01 15 79172896 79172896 A G MORF4L1 Missense_Mutation p.I44V 0.26 tolerated(0.27) benign(0.383) TCGA-CR-6474-01 15 89074302 89074302 T C DET1 Missense_Mutation p.D223G 0.19 deleterious(0) probably_damaging(1) TCGA-CR-6474-01 16 15694394 15694394 G C KIAA0430 Silent p.L1568L 0.23 TCGA-CR-6474-01 16 77397755 77397755 T G ADAMTS18 Missense_Mutation p.I334L 0.15 tolerated(0.28) possibly_damaging(0.524) TCGA-CR-6474-01 17 10293886 10293886 C G MYH8 Missense_Mutation p.R1900P 0.12 deleterious(0) probably_damaging(0.979) TCGA-CR-6474-01 17 18156743 18156743 C T FLII Silent p.K295K 0.31 TCGA-CR-6474-01 17 2298243 2298243 T G MNT Silent p.P193P 0.25 TCGA-CR-6474-01 17 30179963 30179963 C G COPRS Missense_Mutation p.E85Q 0.09 deleterious(0.02) possibly_damaging(0.904) TCGA-CR-6474-01 17 34325338 34325338 C T CCL15 Missense_Mutation p.E76K 0.06 tolerated(0.28) benign(0.022) TCGA-CR-6474-01 17 38153867 38153867 G A PSMD3 3'UTR 0.55 TCGA-CR-6474-01 17 62859197 62859197 G C LRRC37A3 Intron 0.26 TCGA-CR-6474-01 17 67189687 67189687 C A ABCA10 Missense_Mutation p.G530C 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-CR-6474-01 17 691248 691248 G A RNMTL1 Silent p.K201K 0.07 TCGA-CR-6474-01 17 7230951 7230951 C A NEURL4 Missense_Mutation p.G179C 0.42 deleterious(0) probably_damaging(0.946) TCGA-CR-6474-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.48 deleterious(0) probably_damaging(1) TCGA-CR-6474-01 17 7592167 7592167 A G WRAP53 Silent p.L67L 0.24 TCGA-CR-6474-01 18 3086058 3086059 - T MYOM1 Frame_Shift_Ins p.I1410Nfs*18 0.09 TCGA-CR-6474-01 18 42530201 42530201 C G SETBP1 Missense_Mutation p.P299R 0.15 deleterious(0.01) benign(0.174) TCGA-CR-6474-01 19 11888528 11888528 A G ZNF441 Missense_Mutation p.T36A 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-CR-6474-01 19 17411962 17411962 T C ABHD8 Missense_Mutation p.K155R 0.21 tolerated(0.05) probably_damaging(0.998) TCGA-CR-6474-01 19 21606158 21606158 A T ZNF493 Missense_Mutation p.T233S 0.25 tolerated(0.13) probably_damaging(0.917) TCGA-CR-6474-01 19 22939994 22939994 A G ZNF99 3'Flank 0.11 TCGA-CR-6474-01 19 35832025 35832025 C T CD22 Silent p.V497V 0.34 TCGA-CR-6474-01 19 3779783 3779783 C T MATK Missense_Mutation p.G253D 0.10 deleterious(0) probably_damaging(0.972) TCGA-CR-6474-01 19 4110577 4110577 G A MAP2K2 Missense_Mutation p.S127L 0.13 deleterious(0) probably_damaging(0.99) TCGA-CR-6474-01 19 56473581 56473581 C G NLRP8 Missense_Mutation p.Q731E 0.18 tolerated(0.85) benign(0.015) TCGA-CR-6474-01 19 57646638 57646638 A C ZIM3 Missense_Mutation p.I356S 0.13 tolerated(0.21) probably_damaging(0.995) TCGA-CR-6474-01 1 11090260 11090260 C A MASP2 Nonsense_Mutation p.E424* 0.24 TCGA-CR-6474-01 1 146696734 146696734 C T FMO5 Intron 0.19 TCGA-CR-6474-01 1 149784913 149784913 C G HIST2H3D Silent p.T108T 0.16 TCGA-CR-6474-01 1 157497570 157497570 C T FCRL5 Nonsense_Mutation p.W599* 0.21 TCGA-CR-6474-01 1 158151354 158151354 C T CD1D Silent p.S57S 0.25 TCGA-CR-6474-01 1 170001123 170001123 C G KIFAP3 Missense_Mutation p.D249H 0.10 deleterious(0.02) possibly_damaging(0.8) TCGA-CR-6474-01 1 17953907 17953907 A G ARHGEF10L Missense_Mutation p.E498G 0.23 deleterious(0) probably_damaging(0.991) TCGA-CR-6474-01 1 203148443 203148443 A G CHI3L1 3'UTR 0.39 TCGA-CR-6474-01 1 46656363 46656363 C T POMGNT1 Intron 0.29 TCGA-CR-6474-01 1 7724942 7724942 G A CAMTA1 Missense_Mutation p.D779N 0.08 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CR-6474-01 1 78183606 78183606 G C USP33 Missense_Mutation p.Q653E 0.05 tolerated(0.11) benign(0.217) TCGA-CR-6474-01 1 78383306 78383306 A T NEXN Missense_Mutation p.K28M 0.09 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-CR-6474-01 1 87558299 87558299 T C HS2ST1 Missense_Mutation p.F179L 0.09 deleterious(0.02) benign(0.013) TCGA-CR-6474-01 1 89271671 89271671 G C PKN2 Missense_Mutation p.E592Q 0.13 tolerated(0.47) benign(0.004) TCGA-CR-6474-01 1 97981411 97981411 C A DPYD Missense_Mutation p.M537I 0.09 tolerated(0.48) benign(0.01) TCGA-CR-6474-01 20 16359581 16359581 G C KIF16B Missense_Mutation p.H1022Q 0.06 tolerated_low_confidence(0.14) benign(0.062) TCGA-CR-6474-01 20 2542577 2542577 C T TMC2 Nonsense_Mutation p.Q159* 0.16 TCGA-CR-6474-01 20 31436547 31436547 G A MAPRE1 3'UTR 0.34 TCGA-CR-6474-01 20 34317447 34317447 G A RBM39 Missense_Mutation p.S100F 0.07 deleterious(0.03) benign(0) TCGA-CR-6474-01 20 3541513 3541513 C G ATRN Missense_Mutation p.L470V 0.07 tolerated(0.31) benign(0.013) TCGA-CR-6474-01 20 8352093 8352093 C G PLCB1 Missense_Mutation p.P81R 0.14 deleterious(0) benign(0.01) TCGA-CR-6474-01 21 28216933 28216933 G A ADAMTS1 Missense_Mutation p.P114L 0.17 tolerated(0.25) benign(0.003) TCGA-CR-6474-01 21 44195418 44195418 G A PDE9A 3'UTR 0.09 TCGA-CR-6474-01 21 46066855 46066855 C T KRTAP10-11 Silent p.T160T 0.35 TCGA-CR-6474-01 22 50862016 50862016 C T PPP6R2 Silent p.C367C 0.10 TCGA-CR-6474-01 2 100210748 100210748 C A AFF3 Nonsense_Mutation p.E484* 0.15 TCGA-CR-6474-01 2 166897962 166897962 G T SCN1A Missense_Mutation p.Q732K 0.35 tolerated(0.08) possibly_damaging(0.611) TCGA-CR-6474-01 2 179582358 179582358 C T TTN Missense_Mutation p.A8415T 0.16 TCGA-CR-6474-01 2 198953700 198953701 TT - PLCL1 Frame_Shift_Del p.L945Rfs*27 0.16 TCGA-CR-6474-01 2 215274872 215274872 T C SPAG16 Silent p.L577L 0.29 TCGA-CR-6474-01 2 225652094 225652094 T C DOCK10 Silent p.L1813L 0.28 TCGA-CR-6474-01 2 230663654 230663654 G A TRIP12 Missense_Mutation p.A1065V 0.26 tolerated(0.14) benign(0.036) TCGA-CR-6474-01 2 65245229 65245229 G A SLC1A4 Missense_Mutation p.M353I 0.29 tolerated(0.27) benign(0.003) TCGA-CR-6474-01 2 90121911 90121914 CACT ACA IGKV1D-17 Frame_Shift_Del p.T44Hfs*12 0.10 TCGA-CR-6474-01 3 124415027 124415027 G C AC080008.1 3'Flank 0.13 TCGA-CR-6474-01 3 141884493 141884493 G A GK5 Missense_Mutation p.R521C 0.11 deleterious(0.01) benign(0.439) TCGA-CR-6474-01 3 155838565 155838565 C G KCNAB1 Silent p.L55L 0.15 TCGA-CR-6474-01 3 15609397 15609397 C T HACL1 Missense_Mutation p.D455N 0.08 deleterious(0) probably_damaging(0.998) TCGA-CR-6474-01 3 172643242 172643242 C A SPATA16 Missense_Mutation p.W374C 0.20 deleterious(0) possibly_damaging(0.878) TCGA-CR-6474-01 3 48691215 48691215 G A CELSR3 Missense_Mutation p.A1762V 0.05 tolerated(0.16) benign(0.001) TCGA-CR-6474-01 3 48719836 48719836 C T NCKIPSD Missense_Mutation p.R144Q 0.09 deleterious(0.05) possibly_damaging(0.517) TCGA-CR-6474-01 3 53222779 53222780 - T PRKCD Frame_Shift_Ins p.K488Qfs*26 0.15 TCGA-CR-6474-01 3 54913049 54913049 G C CACNA2D3 Missense_Mutation p.R572T 0.10 deleterious(0) probably_damaging(0.989) TCGA-CR-6474-01 3 85961658 85961658 C G CADM2 Missense_Mutation p.T215S 0.30 tolerated(1) benign(0.004) TCGA-CR-6474-01 3 97516946 97516946 G C ARL6 3'UTR 0.12 TCGA-CR-6474-01 4 115773929 115773929 T G NDST4 Missense_Mutation p.T590P 0.23 deleterious(0.01) benign(0.095) TCGA-CR-6474-01 4 120213687 120213687 C G USP53 Missense_Mutation p.S848C 0.12 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-CR-6474-01 4 122742139 122742139 T G CCNA2 Missense_Mutation p.M189L 0.10 tolerated(0.38) benign(0.005) TCGA-CR-6474-01 4 20482374 20482374 A T SLIT2 Missense_Mutation p.D168V 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CR-6474-01 4 42145927 42145927 G T BEND4 Missense_Mutation p.S191Y 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.675) TCGA-CR-6474-01 4 436363 436363 C T ZNF721 Silent p.Q631Q 0.09 TCGA-CR-6474-01 4 7056454 7056454 G A TADA2B Silent p.R312R 0.06 TCGA-CR-6474-01 4 85748035 85748035 T A WDFY3 Silent p.P352P 0.12 TCGA-CR-6474-01 5 100147498 100147498 C G ST8SIA4 3'UTR 0.30 TCGA-CR-6474-01 5 134121257 134121257 G C DDX46 Missense_Mutation p.G482A 0.11 deleterious(0) probably_damaging(1) TCGA-CR-6474-01 5 138283163 138283163 C G SIL1 Splice_Site p.X344_splice 0.11 TCGA-CR-6474-01 5 140798773 140798773 G A PCDHGB7 Silent p.A449A 0.07 TCGA-CR-6474-01 5 148715178 148715178 A T AFAP1L1 Missense_Mutation p.N726Y 0.05 deleterious(0.01) benign(0.121) TCGA-CR-6474-01 5 16761646 16761646 C T MYO10 Missense_Mutation p.D556N 0.14 tolerated(0.11) probably_damaging(0.997) TCGA-CR-6474-01 5 38464020 38464020 G C EGFLAM Missense_Mutation p.D996H 0.16 deleterious(0) probably_damaging(1) TCGA-CR-6474-01 6 119324126 119324126 C G FAM184A Missense_Mutation p.D676H 0.10 tolerated(0.12) possibly_damaging(0.668) TCGA-CR-6474-01 6 130370430 130370430 C T L3MBTL3 Missense_Mutation p.R36W 0.24 deleterious(0) probably_damaging(0.991) TCGA-CR-6474-01 6 146480529 146480529 C T GRM1 Missense_Mutation p.A249V 0.10 deleterious(0.03) benign(0.219) TCGA-CR-6474-01 6 24145830 24145830 G T NRSN1 Missense_Mutation p.V82L 0.08 deleterious(0.01) possibly_damaging(0.623) TCGA-CR-6474-01 6 44222789 44222789 A T SLC35B2 Missense_Mutation p.L318Q 0.31 deleterious(0) probably_damaging(1) TCGA-CR-6474-01 6 55113547 55113547 C A HCRTR2 Missense_Mutation p.L112M 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-CR-6474-01 6 90425374 90425374 G A MDN1 Silent p.F2286F 0.08 TCGA-CR-6474-01 6 90647860 90647860 C A BACH2 Intron 0.31 TCGA-CR-6474-01 7 142625874 142625874 T G TRPV5 Missense_Mutation p.H225P 0.05 tolerated(0.29) benign(0.317) TCGA-CR-6474-01 7 143632931 143632931 T G OR2F2 Silent p.S202S 0.21 TCGA-CR-6474-01 7 1528988 1528988 C T INTS1 Silent p.V770V 0.16 TCGA-CR-6474-01 7 73790521 73790521 A G CLIP2 Missense_Mutation p.D597G 0.19 tolerated(0.16) benign(0.007) TCGA-CR-6474-01 7 73795176 73795176 C T CLIP2 Missense_Mutation p.T821M 0.22 tolerated(1) benign(0.001) TCGA-CR-6474-01 8 104054601 104054601 G A ATP6V1C1 Missense_Mutation p.D56N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-CR-6474-01 8 107763289 107763289 A T OXR1 3'UTR 0.26 TCGA-CR-6474-01 8 71495448 71495448 C G TRAM1 Silent p.V334V 0.11 TCGA-CR-6474-01 9 116356436 116356436 G A RGS3 Intron 0.19 TCGA-CR-6474-01 9 37887716 37887716 G A SLC25A51 Missense_Mutation p.R278W 0.17 deleterious(0.03) possibly_damaging(0.635) TCGA-CR-6474-01 X 26157074 26157074 A G MAGEB18 5'UTR 0.57 TCGA-CR-6474-01 X 83357104 83357104 G A RPS6KA6 Nonsense_Mutation p.R573* 0.70 TCGA-CR-6474-01 X 86890582 86890582 C T KLHL4 Missense_Mutation p.R578C 0.46 deleterious(0) probably_damaging(1) TCGA-CR-6477-01 10 102763471 102763475 AGTGG - LZTS2 Frame_Shift_Del p.S206Lfs*96 0.33 TCGA-CR-6477-01 10 115923080 115923080 G A C10orf118 5'UTR 0.35 TCGA-CR-6477-01 10 120513993 120513993 G A CACUL1 Silent p.C94C 0.14 TCGA-CR-6477-01 10 121685722 121685722 G A SEC23IP Missense_Mutation p.E766K 0.05 tolerated(0.18) benign(0.003) TCGA-CR-6477-01 10 51768861 51768861 A G AGAP6 Missense_Mutation p.I326V 0.14 tolerated(0.89) benign(0.017) TCGA-CR-6477-01 11 123847715 123847715 G A OR10S1 Silent p.I228I 0.09 TCGA-CR-6477-01 11 55658878 55658878 C A TRIM51 Missense_Mutation p.L377I 0.14 tolerated(0.6) possibly_damaging(0.597) TCGA-CR-6477-01 11 55945016 55945016 A C OR5J2 Missense_Mutation p.K308T 0.22 deleterious(0.02) benign(0.043) TCGA-CR-6477-01 11 66330402 66330402 T C CTSF 3'Flank 0.12 TCGA-CR-6477-01 11 68341612 68341612 A G PPP6R3 Missense_Mutation p.H460R 0.28 deleterious(0) probably_damaging(0.994) TCGA-CR-6477-01 11 68571514 68571514 G A CPT1A Missense_Mutation p.S170L 0.11 deleterious(0) benign(0.231) TCGA-CR-6477-01 11 71725761 71725761 G A NUMA1 Nonsense_Mutation p.Q930* 0.26 TCGA-CR-6477-01 11 73584274 73584274 G A COA4 Silent p.D50D 0.09 TCGA-CR-6477-01 12 102471261 102471261 A G NUP37 Silent p.N187N 0.11 TCGA-CR-6477-01 12 78511829 78511829 G A NAV3 Missense_Mutation p.R931H 0.20 tolerated(0.76) benign(0.013) TCGA-CR-6477-01 13 52742433 52742433 C T MRPS31P5 RNA 0.11 TCGA-CR-6477-01 14 101530842 101530842 A G MIR541 RNA 0.09 TCGA-CR-6477-01 14 21966392 21966392 G A METTL3 3'UTR 0.06 TCGA-CR-6477-01 14 56755320 56755320 G T PELI2 Nonsense_Mutation p.G159* 0.31 TCGA-CR-6477-01 14 62203800 62203800 A G HIF1A Missense_Mutation p.I432V 0.41 tolerated(0.11) benign(0.05) TCGA-CR-6477-01 14 62536483 62536483 G A SYT16 Missense_Mutation p.R229H 0.12 tolerated(0.66) benign(0.002) TCGA-CR-6477-01 14 69805441 69805441 C T GALNT16 Silent p.F347F 0.05 TCGA-CR-6477-01 14 70175480 70175481 - T KIAA0247 Frame_Shift_Ins p.G183Wfs*11 0.36 TCGA-CR-6477-01 15 42651956 42651956 C T CAPN3 5'UTR 0.15 TCGA-CR-6477-01 15 72227761 72227761 T A MYO9A Missense_Mutation p.T815S 0.13 tolerated(1) benign(0) TCGA-CR-6477-01 16 20442585 20442585 G A ACSM5 Missense_Mutation p.G417E 0.10 deleterious(0) probably_damaging(1) TCGA-CR-6477-01 16 2369816 2369816 G A ABCA3 Silent p.A213A 0.12 TCGA-CR-6477-01 16 47294551 47294551 C G ITFG1 Missense_Mutation p.E376Q 0.09 tolerated(0.51) benign(0.01) TCGA-CR-6477-01 16 66969474 66969474 C A CES2 Missense_Mutation p.P43Q 0.10 tolerated_low_confidence(0.1) benign(0.08) TCGA-CR-6477-01 17 10398332 10398332 C T MYH1 Silent p.V1794V 0.15 TCGA-CR-6477-01 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.40 tolerated(0.12) benign(0.252) TCGA-CR-6477-01 17 27937744 27937744 G A ANKRD13B Silent p.R288R 0.13 TCGA-CR-6477-01 17 5042701 5042701 T G USP6 Silent p.R410R 0.10 TCGA-CR-6477-01 17 7574003 7574003 G - TP53 Frame_Shift_Del p.R342Efs*3 0.35 TCGA-CR-6477-01 18 33703502 33703502 C T SLC39A6 Missense_Mutation p.V366I 0.10 deleterious(0) probably_damaging(0.984) TCGA-CR-6477-01 19 1507298 1507299 TG - ADAMTSL5 Frame_Shift_Del p.T265Rfs*15 0.16 TCGA-CR-6477-01 19 50099892 50099892 C T PRR12 Missense_Mutation p.P767L 0.11 possibly_damaging(0.851) TCGA-CR-6477-01 1 103496741 103496741 C G COL11A1 Missense_Mutation p.E237D 0.24 benign(0.432) TCGA-CR-6477-01 1 1149108 1149108 C T TNFRSF4 Missense_Mutation p.G68E 0.31 tolerated(1) benign(0.003) TCGA-CR-6477-01 1 13716862 13716862 T G PRAMEF17 Missense_Mutation p.S117A 0.14 deleterious(0.03) benign(0.325) TCGA-CR-6477-01 1 155718129 155718129 C T GON4L 3'Flank 0.16 TCGA-CR-6477-01 1 173503733 173503733 A G SLC9C2 Missense_Mutation p.Y622H 0.68 deleterious(0) probably_damaging(0.935) TCGA-CR-6477-01 1 197070787 197070787 G A ASPM Missense_Mutation p.H2532Y 0.13 deleterious(0.02) benign(0.026) TCGA-CR-6477-01 1 19992722 19992722 T C HTR6 Missense_Mutation p.F159S 0.11 deleterious(0) probably_damaging(0.992) TCGA-CR-6477-01 1 200017505 200017505 A G NR5A2 Silent p.L223L 0.14 TCGA-CR-6477-01 1 27278782 27278783 AT - C1orf172 Frame_Shift_Del p.Y30* 0.44 TCGA-CR-6477-01 1 47407103 47407103 C T CYP4A11 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-6477-01 1 60505607 60505607 C T C1orf87 Silent p.K243K 0.05 TCGA-CR-6477-01 1 861349 861349 C A SAMD11 Missense_Mutation p.P10T 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-CR-6477-01 1 90048267 90048267 T A LRRC8B Missense_Mutation p.L20I 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-CR-6477-01 21 43536021 43536025 GTCAG - UMODL1 Frame_Shift_Del p.R930Lfs*97 0.21 TCGA-CR-6477-01 22 28193871 28193871 G A MN1 Silent p.A887A 0.42 TCGA-CR-6477-01 22 32487710 32487710 G A SLC5A1 Missense_Mutation p.R414H 0.44 deleterious(0.01) probably_damaging(1) TCGA-CR-6477-01 2 107459945 107459945 A C ST6GAL2 Missense_Mutation p.F163L 0.10 benign(0) TCGA-CR-6477-01 2 136566025 136566025 C G LCT Missense_Mutation p.E1298Q 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-CR-6477-01 2 158636996 158636996 C T ACVR1 Missense_Mutation p.G62S 0.12 deleterious(0.04) benign(0.207) TCGA-CR-6477-01 2 163302670 163302670 C T KCNH7 Missense_Mutation p.R471K 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-CR-6477-01 2 176982013 176982013 A G HOXD10 Missense_Mutation p.Y151C 0.74 deleterious(0) probably_damaging(0.997) TCGA-CR-6477-01 2 179586740 179586740 T C TTN Silent p.K7550K 0.09 TCGA-CR-6477-01 2 190592581 190592581 G A ANKAR Splice_Site p.X879_splice 0.22 TCGA-CR-6477-01 2 225376094 225376094 A C CUL3 Missense_Mutation p.M287R 0.15 deleterious(0) probably_damaging(1) TCGA-CR-6477-01 2 65245373 65245373 C G SLC1A4 Silent p.L401L 0.09 TCGA-CR-6477-01 3 1320176 1320176 A G CNTN6 Silent p.P146P 0.11 TCGA-CR-6477-01 3 18391087 18391087 G A SATB1 Missense_Mutation p.R655W 0.17 deleterious(0) possibly_damaging(0.781) TCGA-CR-6477-01 3 26751571 26751571 G A LRRC3B Silent p.L136L 0.41 TCGA-CR-6477-01 3 28562601 28562601 A G ZCWPW2 Silent p.G301G 0.32 TCGA-CR-6477-01 3 38760236 38760236 A C SCN10A Missense_Mutation p.F1197V 0.09 deleterious(0) probably_damaging(1) TCGA-CR-6477-01 3 47888975 47888975 C T DHX30 Missense_Mutation p.R687C 0.25 deleterious(0) benign(0.195) TCGA-CR-6477-01 3 89390112 89390112 T G EPHA3 Missense_Mutation p.C287W 0.10 deleterious(0) benign(0.016) TCGA-CR-6477-01 3 97662186 97662186 T C CRYBG3 3'UTR 0.24 TCGA-CR-6477-01 4 100125995 100125995 G C ADH6 Intron 0.12 TCGA-CR-6477-01 4 106158042 106158042 T A TET2 Silent p.I981I 0.25 TCGA-CR-6477-01 4 122722749 122722749 G A EXOSC9 Intron 0.20 TCGA-CR-6477-01 4 187540779 187540779 G A FAT1 Nonsense_Mutation p.Q2321* 0.27 TCGA-CR-6477-01 5 13721156 13721156 C A DNAH5 Missense_Mutation p.G4078C 0.12 probably_damaging(0.991) TCGA-CR-6477-01 5 150925423 150925423 A G FAT2 Silent p.A1755A 0.17 TCGA-CR-6477-01 5 32276834 32276834 G T MTMR12 Missense_Mutation p.N32K 0.05 tolerated(0.41) benign(0.005) TCGA-CR-6477-01 5 33947210 33947210 C G SLC45A2 Intron 0.07 TCGA-CR-6477-01 5 89941887 89941887 G A GPR98 Missense_Mutation p.D1001N 0.42 probably_damaging(0.945) TCGA-CR-6477-01 6 152831446 152831446 C T SYNE1 Missense_Mutation p.V155M 0.05 benign(0.018) TCGA-CR-6477-01 6 154763230 154763230 C T CNKSR3 Nonsense_Mutation p.W137* 0.07 TCGA-CR-6477-01 6 36070426 36070426 G T MAPK14 Missense_Mutation p.A281S 0.24 deleterious(0.01) possibly_damaging(0.813) TCGA-CR-6477-01 6 56494141 56494141 T C DST Missense_Mutation p.Y924C 0.31 possibly_damaging(0.819) TCGA-CR-6477-01 7 100683015 100683015 C T MUC17 Missense_Mutation p.T2773I 0.14 unknown(0) TCGA-CR-6477-01 7 102952157 102952158 - T PMPCB Frame_Shift_Ins p.M408Ifs*6 0.15 TCGA-CR-6477-01 7 2577675 2577675 G C BRAT1 3'UTR 0.09 TCGA-CR-6477-01 7 44924514 44924514 C T PURB Missense_Mutation p.R145H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-6477-01 7 72912824 72912824 T C BAZ1B Intron 0.22 TCGA-CR-6477-01 7 76909918 76909918 A G CCDC146 Missense_Mutation p.M623V 0.26 deleterious(0.04) benign(0.266) TCGA-CR-6477-01 7 95214926 95214926 C A PDK4 3'UTR 0.21 TCGA-CR-6477-01 8 104415406 104415406 G A SLC25A32 Missense_Mutation p.R180C 0.10 deleterious(0.03) probably_damaging(0.982) TCGA-CR-6477-01 8 10466397 10466397 C A RP1L1 Silent p.G1737G 0.08 TCGA-CR-6477-01 8 113347570 113347570 G A CSMD3 Missense_Mutation p.L2385F 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-CR-6477-01 8 3265649 3265649 T G CSMD1 Missense_Mutation p.I615L 0.18 possibly_damaging(0.867) TCGA-CR-6477-01 8 43173712 43173712 C T POTEA RNA 0.14 TCGA-CR-6477-01 9 82320810 82320810 G T TLE4 Missense_Mutation p.D246Y 0.44 deleterious(0) probably_damaging(0.941) TCGA-CR-6477-01 X 118985732 118985732 C T UPF3B Silent p.T87T 0.44 TCGA-CR-6477-01 X 130218939 130218939 A C ARHGAP36 Missense_Mutation p.N286H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-6477-01 X 136649736 136649736 G A ZIC3 Missense_Mutation p.V296I 0.23 tolerated(1) benign(0) TCGA-CR-6477-01 X 18593592 18593592 G C CDKL5 Silent p.V88V 0.21 TCGA-CR-6477-01 X 19377655 19377655 G A PDHA1 Missense_Mutation p.A391T 0.31 deleterious(0) possibly_damaging(0.89) TCGA-CR-6477-01 X 31950341 31950341 T C DMD Silent p.L2206L 0.16 TCGA-CR-6477-01 X 50028249 50028249 C T CCNB3 Missense_Mutation p.P29L 0.08 tolerated(0.33) benign(0.001) TCGA-CR-6477-01 X 54783977 54783977 T C ITIH6 Missense_Mutation p.I844V 0.24 tolerated(0.13) benign(0.01) TCGA-CR-6477-01 X 63410937 63410937 C G AMER1 Missense_Mutation p.A744P 0.29 deleterious(0.01) probably_damaging(0.914) TCGA-CR-6477-01 X 79988994 79988994 T C BRWD3 Missense_Mutation p.D363G 0.05 deleterious(0.01) possibly_damaging(0.641) TCGA-CR-6477-01 X 91133770 91133770 C A PCDH11X Missense_Mutation p.A844D 0.29 tolerated(0.07) probably_damaging(0.944) TCGA-CR-6478-01 10 101190305 101190305 G A GOT1 Silent p.V6V 0.11 TCGA-CR-6478-01 10 106899161 106899161 A C SORCS3 Missense_Mutation p.T407P 0.09 deleterious(0.03) benign(0.102) TCGA-CR-6478-01 10 122668114 122668114 G A WDR11 Silent p.K1188K 0.05 TCGA-CR-6478-01 10 30316179 30316179 G A KIAA1462 Silent p.D966D 0.26 TCGA-CR-6478-01 10 61022290 61022290 G A FAM13C Silent p.G380G 0.11 TCGA-CR-6478-01 10 74114770 74114770 C T DNAJB12 5'UTR 0.17 TCGA-CR-6478-01 10 81697587 81697587 G T SFTPD 3'UTR 0.22 TCGA-CR-6478-01 10 81697588 81697588 C T SFTPD 3'UTR 0.21 TCGA-CR-6478-01 10 99340627 99340627 C T ANKRD2 Silent p.L185L 0.25 TCGA-CR-6478-01 11 110036199 110036199 G A ZC3H12C Missense_Mutation p.D797N 0.07 tolerated(1) benign(0.008) TCGA-CR-6478-01 11 132081943 132081943 C G NTM Nonsense_Mutation p.S143* 0.10 TCGA-CR-6478-01 11 34533165 34533165 G A ELF5 5'UTR 0.25 TCGA-CR-6478-01 11 3681285 3681285 G T ART1 Missense_Mutation p.R179L 0.44 deleterious(0) probably_damaging(0.98) TCGA-CR-6478-01 11 60059779 60059779 A T MS4A4A Silent p.G41G 0.16 TCGA-CR-6478-01 11 62294494 62294494 G A AHNAK Silent p.P2465P 0.10 TCGA-CR-6478-01 11 67052618 67052618 C T ADRBK1 Missense_Mutation p.L622F 0.06 tolerated(0.1) benign(0.053) TCGA-CR-6478-01 11 70332040 70332040 G A SHANK2 Missense_Mutation p.S1454F 0.03 deleterious(0.04) possibly_damaging(0.485) TCGA-CR-6478-01 11 71276860 71276860 C G KRTAP5-10 Missense_Mutation p.S76C 0.26 unknown(0) TCGA-CR-6478-01 11 71277239 71277239 C G KRTAP5-10 Missense_Mutation p.I202M 0.37 unknown(0) TCGA-CR-6478-01 11 92624271 92624271 C T FAT3 Nonsense_Mutation p.Q4588* 0.41 TCGA-CR-6478-01 12 100550734 100550734 C T AC010203.1 3'Flank 0.11 TCGA-CR-6478-01 12 104067821 104067821 C T STAB2 Silent p.F836F 0.29 TCGA-CR-6478-01 12 109522853 109522853 C T USP30 Missense_Mutation p.P422S 0.09 tolerated(0.46) benign(0.026) TCGA-CR-6478-01 12 123214555 123214555 G A HCAR1 Missense_Mutation p.A111V 0.12 tolerated(1) benign(0.001) TCGA-CR-6478-01 12 14949890 14949890 C G WBP11 Missense_Mutation p.D80H 0.43 deleterious(0.04) unknown(0) TCGA-CR-6478-01 12 20799470 20799470 T C PDE3A Silent p.Y766Y 0.19 TCGA-CR-6478-01 12 32900172 32900172 C T YARS2 Missense_Mutation p.R467K 0.37 tolerated(1) benign(0.006) TCGA-CR-6478-01 12 39726145 39726145 C T KIF21A Silent p.E974E 0.07 TCGA-CR-6478-01 12 40651163 40651163 C T LRRK2 Missense_Mutation p.H468Y 0.09 tolerated(1) benign(0.004) TCGA-CR-6478-01 12 49434415 49434415 G A KMT2D Nonsense_Mutation p.Q2380* 0.09 TCGA-CR-6478-01 12 75905362 75905362 G A KRR1 Silent p.L6L 0.09 TCGA-CR-6478-01 12 81839428 81839428 C T PPFIA2 Silent p.R159R 0.06 TCGA-CR-6478-01 13 49742771 49742771 A G FNDC3A Missense_Mutation p.I354V 0.29 tolerated(1) benign(0) TCGA-CR-6478-01 14 58056063 58056063 T C SLC35F4 Missense_Mutation p.Y189C 0.35 deleterious(0) probably_damaging(0.935) TCGA-CR-6478-01 15 33916108 33916108 A G RYR3 Missense_Mutation p.R820G 0.20 benign(0.021) TCGA-CR-6478-01 15 34522006 34522007 - CGG EMC4 3'UTR 0.10 TCGA-CR-6478-01 15 34526146 34526146 T A SLC12A6 Missense_Mutation p.E1130V 0.14 deleterious(0) probably_damaging(0.999) TCGA-CR-6478-01 15 38243510 38243510 G A TMCO5A 3'UTR 0.24 TCGA-CR-6478-01 15 45445673 45445673 G A DUOX1 Missense_Mutation p.D1174N 0.14 tolerated(0.38) benign(0.045) TCGA-CR-6478-01 16 2522266 2522266 C T NTN3 Silent p.S188S 0.23 TCGA-CR-6478-01 16 30977192 30977192 G A SETD1A Missense_Mutation p.E664K 0.10 possibly_damaging(0.636) TCGA-CR-6478-01 16 3486915 3486915 G A ZNF597 Missense_Mutation p.H262Y 0.11 deleterious(0) probably_damaging(0.986) TCGA-CR-6478-01 16 3786770 3786770 C T CREBBP Missense_Mutation p.D1481N 0.16 unknown(0) TCGA-CR-6478-01 16 67692699 67692699 G A ACD Silent p.V308V 0.14 TCGA-CR-6478-01 16 67778207 67778207 C T RANBP10 Silent p.K184K 0.08 TCGA-CR-6478-01 16 70571939 70571939 C A SF3B3 Intron 0.26 TCGA-CR-6478-01 16 90161774 90161774 G T TUBB8P7 RNA 0.18 TCGA-CR-6478-01 16 90161775 90161775 C T TUBB8P7 RNA 0.20 TCGA-CR-6478-01 17 1840605 1840605 C T RTN4RL1 Missense_Mutation p.D171N 0.14 deleterious(0) probably_damaging(0.976) TCGA-CR-6478-01 17 27896356 27896356 C T TP53I13 Silent p.Y54Y 0.14 TCGA-CR-6478-01 17 35825582 35825582 A G TADA2A Missense_Mutation p.M254V 0.25 tolerated(0.11) benign(0.003) TCGA-CR-6478-01 17 38638646 38638646 G T TNS4 Silent p.I508I 0.15 TCGA-CR-6478-01 17 41956730 41956730 C A MPP2 Silent p.V465V 0.17 TCGA-CR-6478-01 17 48618855 48618855 G A EPN3 Missense_Mutation p.S462N 0.11 tolerated(0.18) benign(0.008) TCGA-CR-6478-01 17 62291153 62291153 C T TEX2 Missense_Mutation p.G142E 0.09 tolerated_low_confidence(0.26) benign(0.25) TCGA-CR-6478-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.37 deleterious(0) probably_damaging(1) TCGA-CR-6478-01 18 23772346 23772346 G A PSMA8 Missense_Mutation p.E248K 0.15 tolerated(0.64) unknown(0) TCGA-CR-6478-01 18 51820401 51820401 C T POLI Missense_Mutation p.S596F 0.26 tolerated(0.1) possibly_damaging(0.499) TCGA-CR-6478-01 18 5397374 5397374 G C EPB41L3 Missense_Mutation p.H842D 0.19 tolerated(0.08) benign(0.001) TCGA-CR-6478-01 18 5397375 5397375 C A EPB41L3 Silent p.V841V 0.20 TCGA-CR-6478-01 18 72914175 72914175 A G ZADH2 Silent p.S110S 0.10 TCGA-CR-6478-01 19 10663623 10663623 T A ATG4D Silent p.A435A 0.16 TCGA-CR-6478-01 19 14707912 14707912 C T CLEC17A Silent p.Y195Y 0.14 TCGA-CR-6478-01 19 14991892 14991892 G A OR7A17 Silent p.I92I 0.16 TCGA-CR-6478-01 19 17057903 17057903 C T CPAMD8 Silent p.L928L 0.12 TCGA-CR-6478-01 19 18376204 18376204 T A KIAA1683 Missense_Mutation p.M716L 0.13 deleterious(0.01) benign(0.002) TCGA-CR-6478-01 19 20229657 20229657 A G ZNF90 Missense_Mutation p.K432E 0.18 deleterious(0) possibly_damaging(0.806) TCGA-CR-6478-01 19 31039805 31039805 C T ZNF536 Silent p.S1093S 0.20 TCGA-CR-6478-01 19 55652591 55652591 T G TNNT1 Missense_Mutation p.K91T 0.14 deleterious(0.02) probably_damaging(0.967) TCGA-CR-6478-01 19 6919744 6919744 C T EMR1 Silent p.L536L 0.11 TCGA-CR-6478-01 1 100606565 100606565 C T TRMT13 Missense_Mutation p.T220I 0.12 deleterious(0.04) possibly_damaging(0.733) TCGA-CR-6478-01 1 109366241 109366241 C T AKNAD1 Missense_Mutation p.C669Y 0.17 deleterious(0.03) benign(0.133) TCGA-CR-6478-01 1 111731345 111731345 G A DENND2D Nonsense_Mutation p.Q360* 0.04 TCGA-CR-6478-01 1 149858212 149858212 G C HIST2H2BE 5'UTR 0.12 TCGA-CR-6478-01 1 152187050 152187050 G A HRNR Missense_Mutation p.S2352F 0.05 unknown(0) TCGA-CR-6478-01 1 202464747 202464747 C T PPP1R12B Silent p.I795I 0.10 TCGA-CR-6478-01 1 21599368 21599368 G A ECE1 Missense_Mutation p.S106L 0.11 tolerated(0.62) benign(0.097) TCGA-CR-6478-01 1 216017746 216017746 C T USH2A Missense_Mutation p.V3050I 0.11 benign(0.104) TCGA-CR-6478-01 1 222801790 222801790 G A MIA3 Missense_Mutation p.E410K 0.19 deleterious(0.01) possibly_damaging(0.468) TCGA-CR-6478-01 1 235904814 235904814 G A LYST Missense_Mutation p.H2756Y 0.11 tolerated(0.58) probably_damaging(0.979) TCGA-CR-6478-01 1 248551586 248551586 A C OR2T6 Missense_Mutation p.H226P 0.22 tolerated(0.18) possibly_damaging(0.74) TCGA-CR-6478-01 1 248790265 248790265 G A OR2T11 Silent p.P55P 0.07 TCGA-CR-6478-01 1 29557401 29557401 G A MECR Silent p.T6T 0.11 TCGA-CR-6478-01 1 35859302 35859302 C T ZMYM4 Missense_Mutation p.S958F 0.11 deleterious(0) probably_damaging(0.938) TCGA-CR-6478-01 1 43637162 43637162 C T EBNA1BP2 Missense_Mutation p.R159Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-CR-6478-01 1 45478996 45478996 C T UROD Silent p.I82I 0.23 TCGA-CR-6478-01 1 52499004 52499004 C T KTI12 Missense_Mutation p.A144T 0.24 tolerated(0.35) benign(0) TCGA-CR-6478-01 1 87012825 87012825 T C CLCA4 Missense_Mutation p.V8A 0.09 tolerated(0.38) unknown(0) TCGA-CR-6478-01 20 18529385 18529385 T A SEC23B Missense_Mutation p.Y626N 0.21 tolerated(0.3) benign(0.174) TCGA-CR-6478-01 20 4764911 4764911 C T RASSF2 3'UTR 0.21 TCGA-CR-6478-01 20 49575960 49575962 TGC - MOCS3 In_Frame_Del p.L195del 0.22 TCGA-CR-6478-01 20 9496129 9496129 G A LAMP5 Missense_Mutation p.E32K 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CR-6478-01 21 40604128 40604128 T A BRWD1 Missense_Mutation p.E992V 0.26 deleterious(0) probably_damaging(0.991) TCGA-CR-6478-01 22 22673302 22673302 C T IGLV5-52 Missense_Mutation p.S32F 0.12 deleterious(0.02) benign(0.068) TCGA-CR-6478-01 22 30824464 30824464 C T MTFP1 Silent p.L148L 0.20 TCGA-CR-6478-01 2 120125495 120125495 G A DBI Intron 0.10 TCGA-CR-6478-01 2 135744631 135744631 T A MAP3K19 Missense_Mutation p.H604L 0.16 tolerated(0.3) benign(0.002) TCGA-CR-6478-01 2 160599714 160599714 G A MARCH7 Missense_Mutation p.C99Y 0.15 tolerated(1) probably_damaging(0.997) TCGA-CR-6478-01 2 167133711 167133711 G T SCN9A Missense_Mutation p.Q875K 0.09 deleterious(0.02) probably_damaging(0.963) TCGA-CR-6478-01 2 201507512 201507512 A G AOX1 Silent p.L945L 0.13 TCGA-CR-6478-01 2 26750743 26750743 G C OTOF Missense_Mutation p.L62V 0.11 deleterious(0.03) probably_damaging(0.993) TCGA-CR-6478-01 2 33810258 33810258 C T FAM98A Missense_Mutation p.G381E 0.05 deleterious_low_confidence(0.02) unknown(0) TCGA-CR-6478-01 2 39485697 39485697 G A MAP4K3 Silent p.T780T 0.13 TCGA-CR-6478-01 2 47300993 47300993 C T TTC7A Silent p.F836F 0.27 TCGA-CR-6478-01 2 50280535 50280535 C T NRXN1 Missense_Mutation p.M1374I 0.09 tolerated(0.46) benign(0.003) TCGA-CR-6478-01 2 61492562 61492562 A T USP34 Silent p.P1916P 0.14 TCGA-CR-6478-01 2 97866192 97866192 C T ANKRD36 Silent p.A929A 0.07 TCGA-CR-6478-01 2 98275416 98275416 C T ACTR1B Silent p.E122E 0.07 TCGA-CR-6478-01 3 121206399 121206399 G A POLQ Silent p.F1793F 0.07 TCGA-CR-6478-01 3 121410866 121410866 T C GOLGB1 Missense_Mutation p.T2449A 0.13 benign(0.012) TCGA-CR-6478-01 3 141692899 141692899 C T TFDP2 Silent p.Q218Q 0.27 TCGA-CR-6478-01 3 44776296 44776296 A G ZNF501 Missense_Mutation p.H128R 0.37 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-CR-6478-01 3 49689519 49689519 C T BSN Nonsense_Mutation p.R844* 0.32 TCGA-CR-6478-01 3 53381537 53381537 G A DCP1A Missense_Mutation p.A3V 0.14 deleterious(0.02) benign(0.199) TCGA-CR-6478-01 4 106156428 106156428 A G TET2 Silent p.T443T 0.32 TCGA-CR-6478-01 4 3520617 3520617 C T LRPAP1 Silent p.E191E 0.25 TCGA-CR-6478-01 4 36162102 36162102 G A ARAP2 Silent p.L807L 0.07 TCGA-CR-6478-01 4 52861043 52861043 G A LRRC66 Silent p.S715S 0.05 TCGA-CR-6478-01 4 66197747 66197747 C T EPHA5 Silent p.E984E 0.20 TCGA-CR-6478-01 4 76943923 76943923 T G CXCL10 Missense_Mutation p.N37H 0.04 deleterious(0.04) benign(0.049) TCGA-CR-6478-01 4 83774850 83774850 A G SEC31A Missense_Mutation p.L676P 0.26 deleterious(0) probably_damaging(0.952) TCGA-CR-6478-01 4 83839313 83839313 G A THAP9 Missense_Mutation p.E650K 0.11 tolerated(0.8) benign(0.001) TCGA-CR-6478-01 4 83989672 83989672 G A COPS4 Missense_Mutation p.E362K 0.12 tolerated(0.14) benign(0.1) TCGA-CR-6478-01 5 115782989 115782989 G A SEMA6A Silent p.L805L 0.10 TCGA-CR-6478-01 5 118865640 118865640 C T HSD17B4 Missense_Mutation p.P632S 0.09 tolerated(0.33) benign(0.053) TCGA-CR-6478-01 5 140188443 140188443 C T PCDHA4 Silent p.D557D 0.12 TCGA-CR-6478-01 5 31409214 31409214 C T DROSHA Missense_Mutation p.C1268Y 0.13 deleterious(0) benign(0.345) TCGA-CR-6478-01 5 32407005 32407025 GGCAGCTGTTGCAGCAGCAGC - ZFR In_Frame_Del p.A296_A302del 0.19 TCGA-CR-6478-01 5 40832484 40832484 G A RPL37 3'UTR 0.21 TCGA-CR-6478-01 5 5461426 5461426 C A KIAA0947 Missense_Mutation p.T660N 0.21 deleterious(0.05) benign(0.108) TCGA-CR-6478-01 6 151785628 151785628 G A C6orf211 Missense_Mutation p.E145K 0.14 tolerated(0.71) benign(0.016) TCGA-CR-6478-01 6 155450482 155450482 C T TIAM2 Missense_Mutation p.S42L 0.15 deleterious_low_confidence(0.03) benign(0.008) TCGA-CR-6478-01 6 26043662 26043662 G A HIST1H2BB Missense_Mutation p.A75V 0.28 deleterious_low_confidence(0.01) benign(0.018) TCGA-CR-6478-01 6 27100829 27100829 C T HIST1H2BJ 5'Flank 0.10 TCGA-CR-6478-01 6 27101060 27101060 G A HIST1H2AG Silent p.A70A 0.36 TCGA-CR-6478-01 6 38939413 38939413 G A DNAH8 Missense_Mutation p.R3949Q 0.11 probably_damaging(0.991) TCGA-CR-6478-01 6 44219502 44219502 G A HSP90AB1 Missense_Mutation p.R448H 0.08 deleterious(0.04) possibly_damaging(0.886) TCGA-CR-6478-01 6 52701052 52701052 T C GSTA5 Missense_Mutation p.D85G 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-CR-6478-01 6 97414959 97414959 G C KLHL32 Missense_Mutation p.S8T 0.32 tolerated_low_confidence(0.15) benign(0.001) TCGA-CR-6478-01 7 100179491 100179491 G A LRCH4 Silent p.N169N 0.06 TCGA-CR-6478-01 7 100731849 100731849 C T TRIM56 Missense_Mutation p.P419L 0.12 tolerated(0.12) benign(0.001) TCGA-CR-6478-01 7 103007958 103007958 A G PSMC2 Missense_Mutation p.I315V 0.60 tolerated(0.44) probably_damaging(0.994) TCGA-CR-6478-01 7 142459743 142459743 G A PRSS1 Missense_Mutation p.D107N 0.15 deleterious(0.03) probably_damaging(0.967) TCGA-CR-6478-01 7 38796567 38796567 C T VPS41 Silent p.K522K 0.13 TCGA-CR-6478-01 7 42950074 42950074 G A C7orf25 Silent p.I200I 0.06 TCGA-CR-6478-01 7 55466318 55466318 C T LANCL2 Silent p.V175V 0.16 TCGA-CR-6478-01 8 125113503 125113503 G A FER1L6 Silent p.K1683K 0.07 TCGA-CR-6478-01 8 29203107 29203107 C T DUSP4 Intron 0.12 TCGA-CR-6478-01 8 33246581 33246581 C T FUT10 Missense_Mutation p.R371Q 0.28 deleterious(0) probably_damaging(1) TCGA-CR-6478-01 8 55372417 55372417 C T SOX17 Silent p.F369F 0.15 TCGA-CR-6478-01 8 75941619 75941619 C T CRISPLD1 Intron 0.31 TCGA-CR-6478-01 8 7808253 7808253 C T ZNF705B Missense_Mutation p.S101F 0.25 deleterious(0.05) benign(0.174) TCGA-CR-6478-01 8 96167061 96167061 G A PLEKHF2 3'UTR 0.13 TCGA-CR-6478-01 9 136260872 136260872 C T C9orf96 Missense_Mutation p.S283L 0.12 tolerated(0.13) benign(0.052) TCGA-CR-6478-01 9 19050493 19050493 C T RRAGA Missense_Mutation p.P279L 0.05 tolerated(0.07) benign(0.005) TCGA-CR-6478-01 X 134947917 134947917 G T CT45A5 Nonsense_Mutation p.C136* 0.20 TCGA-CR-6478-01 X 23353314 23353314 G A PTCHD1 Missense_Mutation p.D108N 0.19 tolerated(0.09) probably_damaging(0.916) TCGA-CR-6478-01 X 591553 591553 G A SHOX 5'UTR 0.11 TCGA-CR-6478-01 X 69455943 69455943 G A AWAT1 Missense_Mutation p.R70K 0.10 deleterious(0) benign(0.32) TCGA-CR-6478-01 X 70356763 70356763 A G MED12 Missense_Mutation p.Y1812C 0.24 benign(0.315) TCGA-CR-6480-01 10 102568873 102568873 G A PAX2 Missense_Mutation p.E290K 0.26 tolerated(0.16) benign(0.038) TCGA-CR-6480-01 10 103799781 103799781 C G C10orf76 Missense_Mutation p.E31Q 0.34 tolerated(0.58) benign(0.019) TCGA-CR-6480-01 10 118646072 118646072 G T KIAA1598 Missense_Mutation p.P560H 0.34 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-CR-6480-01 10 61828403 61828403 C G ANK3 Missense_Mutation p.R4079T 0.35 benign(0.012) TCGA-CR-6480-01 10 61829289 61829289 C G ANK3 Missense_Mutation p.D3784H 0.39 probably_damaging(0.993) TCGA-CR-6480-01 10 61829440 61829440 C T ANK3 Missense_Mutation p.M3733I 0.41 benign(0.001) TCGA-CR-6480-01 10 61830234 61830234 C T ANK3 Missense_Mutation p.E3469K 0.34 probably_damaging(0.956) TCGA-CR-6480-01 10 61831482 61831482 C G ANK3 Missense_Mutation p.E3053Q 0.40 benign(0.102) TCGA-CR-6480-01 10 61831782 61831782 C T ANK3 Missense_Mutation p.E2953K 0.31 benign(0.022) TCGA-CR-6480-01 10 61831830 61831830 C T ANK3 Missense_Mutation p.E2937K 0.24 benign(0.007) TCGA-CR-6480-01 10 61831953 61831953 C T ANK3 Missense_Mutation p.E2896K 0.27 benign(0.021) TCGA-CR-6480-01 10 6506278 6506278 G A PRKCQ Missense_Mutation p.A481V 0.24 deleterious(0) probably_damaging(0.935) TCGA-CR-6480-01 10 97779130 97779130 C T CC2D2B Intron 0.70 TCGA-CR-6480-01 11 116661546 116661546 C T APOA5 Silent p.T133T 0.62 TCGA-CR-6480-01 11 31125289 31125289 C G DCDC1 Missense_Mutation p.L593F 0.31 deleterious(0.03) probably_damaging(0.986) TCGA-CR-6480-01 11 64022367 64022367 C T PLCB3 Intron 0.39 TCGA-CR-6480-01 11 64022744 64022744 C T PLCB3 Silent p.I142I 0.31 TCGA-CR-6480-01 11 69514326 69514326 C T FGF19 Missense_Mutation p.D119N 0.36 deleterious(0.02) probably_damaging(0.994) TCGA-CR-6480-01 11 74340350 74340350 G C POLD3 Missense_Mutation p.D330H 0.49 deleterious(0) probably_damaging(0.984) TCGA-CR-6480-01 12 110463612 110463618 AAAAAAG - ANKRD13A Frame_Shift_Del p.K290Dfs*51 0.21 TCGA-CR-6480-01 12 11183373 11183373 A T TAS2R31 Missense_Mutation p.F188I 0.30 deleterious(0.03) possibly_damaging(0.558) TCGA-CR-6480-01 12 118506244 118506244 C G VSIG10 Missense_Mutation p.R502T 0.33 deleterious(0) possibly_damaging(0.848) TCGA-CR-6480-01 12 12871106 12871106 G A CDKN1B Silent p.G111G 0.43 TCGA-CR-6480-01 12 2968408 2968408 G A FOXM1 Missense_Mutation p.S601L 0.36 tolerated(0.13) possibly_damaging(0.476) TCGA-CR-6480-01 12 53861083 53861083 G C PCBP2 Intron 0.40 TCGA-CR-6480-01 12 6031929 6031929 G A ANO2 Nonsense_Mutation p.Q18* 0.40 TCGA-CR-6480-01 14 50789270 50789270 C T ATP5S Missense_Mutation p.A65V 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-CR-6480-01 14 74040259 74040259 G A ACOT2 Missense_Mutation p.E271K 0.41 deleterious(0.03) benign(0.369) TCGA-CR-6480-01 15 45003747 45003747 G T B2M Translation_Start_Site p.M1? 0.53 deleterious(0) possibly_damaging(0.775) TCGA-CR-6480-01 15 48737641 48737641 G C FBN1 Missense_Mutation p.T1950R 0.41 benign(0.424) TCGA-CR-6480-01 15 59172279 59172279 T C SLTM Silent p.V1008V 0.11 TCGA-CR-6480-01 15 64026927 64026927 C A HERC1 Missense_Mutation p.G881V 0.33 probably_damaging(0.983) TCGA-CR-6480-01 15 66855887 66855887 G A LCTL Silent p.P149P 0.35 TCGA-CR-6480-01 15 78557113 78557113 A G DNAJA4 Missense_Mutation p.K32R 0.18 tolerated(0.11) benign(0.162) TCGA-CR-6480-01 16 31477389 31477389 C G ARMC5 Intron 0.47 TCGA-CR-6480-01 16 3639417 3639417 G A SLX4 Nonsense_Mutation p.Q1408* 0.45 TCGA-CR-6480-01 17 1582626 1582626 C T PRPF8 Silent p.L456L 0.37 TCGA-CR-6480-01 17 27943185 27943185 G A CORO6 Silent p.L357L 0.33 TCGA-CR-6480-01 17 27943190 27943190 C G CORO6 Missense_Mutation p.D356H 0.33 deleterious(0.01) probably_damaging(0.942) TCGA-CR-6480-01 17 40870631 40870631 G A EZH1 Nonsense_Mutation p.R258* 0.29 TCGA-CR-6480-01 17 74072818 74072818 C G GALR2 Missense_Mutation p.S157C 0.29 deleterious(0) probably_damaging(0.996) TCGA-CR-6480-01 17 74625693 74625693 C T ST6GALNAC1 Missense_Mutation p.E78K 0.37 benign(0.165) TCGA-CR-6480-01 17 8638891 8638891 C A CCDC42 Silent p.T177T 0.45 TCGA-CR-6480-01 18 3502477 3502477 C T DLGAP1 Intron 0.42 TCGA-CR-6480-01 18 77208872 77208872 C T NFATC1 Nonsense_Mutation p.Q480* 0.56 TCGA-CR-6480-01 19 12807411 12807411 G A FBXW9 5'UTR 0.35 TCGA-CR-6480-01 19 47282157 47282157 G - SLC1A5 Frame_Shift_Del p.P278Lfs*64 0.30 TCGA-CR-6480-01 19 54080933 54080933 C T ZNF331 Silent p.H373H 0.15 TCGA-CR-6480-01 19 7677766 7677766 G A CAMSAP3 Missense_Mutation p.R823K 0.23 deleterious(0) probably_damaging(0.995) TCGA-CR-6480-01 1 110028684 110028684 G A ATXN7L2 Missense_Mutation p.E45K 0.44 deleterious(0.01) benign(0.094) TCGA-CR-6480-01 1 150724308 150724308 G A CTSS Silent p.I192I 0.34 TCGA-CR-6480-01 1 150724458 150724458 G A CTSS Silent p.F142F 0.32 TCGA-CR-6480-01 1 150724480 150724480 G T CTSS Missense_Mutation p.S135Y 0.34 deleterious(0.01) possibly_damaging(0.771) TCGA-CR-6480-01 1 178433454 178433454 G A RASAL2 Silent p.E1098E 0.38 TCGA-CR-6480-01 1 186327736 186327736 G A TPR Missense_Mutation p.S479L 0.28 benign(0.307) TCGA-CR-6480-01 1 19923509 19923509 G A MINOS1-NBL1 5'UTR 0.41 TCGA-CR-6480-01 1 218475717 218475717 G T RRP15 Missense_Mutation p.C74F 0.44 tolerated(0.66) benign(0.002) TCGA-CR-6480-01 1 226041387 226041387 G C TMEM63A Silent p.L580L 0.50 TCGA-CR-6480-01 1 237713931 237713931 G A RYR2 Missense_Mutation p.E1052K 0.50 possibly_damaging(0.64) TCGA-CR-6480-01 1 245850334 245850334 C G KIF26B Missense_Mutation p.S1350C 0.41 tolerated(0.07) unknown(0) TCGA-CR-6480-01 1 27657224 27657224 A G TMEM222 Missense_Mutation p.I70V 0.32 tolerated(0.13) benign(0.005) TCGA-CR-6480-01 1 36291577 36291577 G C AGO4 Missense_Mutation p.E226Q 0.40 tolerated(0.23) probably_damaging(0.987) TCGA-CR-6480-01 1 39341838 39341838 G A GJA9 5'UTR 0.33 TCGA-CR-6480-01 1 67787297 67787297 G C IL12RB2 Missense_Mutation p.R30T 0.31 deleterious(0.01) possibly_damaging(0.906) TCGA-CR-6480-01 1 75037078 75037078 C T C1orf173 Missense_Mutation p.R1439Q 0.09 tolerated(0.49) benign(0) TCGA-CR-6480-01 20 25657009 25657009 G C ZNF337 Silent p.S305S 0.37 TCGA-CR-6480-01 20 31062481 31062481 G A C20orf112 Missense_Mutation p.P11L 0.33 tolerated_low_confidence(0.49) benign(0) TCGA-CR-6480-01 20 62598782 62598782 C T ZNF512B Silent p.K72K 0.40 TCGA-CR-6480-01 21 31709410 31709410 C G KRTAP27-1 Missense_Mutation p.E193Q 0.47 tolerated(0.06) possibly_damaging(0.836) TCGA-CR-6480-01 21 45876816 45876816 C T LRRC3 Missense_Mutation p.H97Y 0.33 tolerated(0.08) benign(0.098) TCGA-CR-6480-01 22 22049338 22049338 A T PPIL2 Missense_Mutation p.K482M 0.16 deleterious(0) probably_damaging(0.996) TCGA-CR-6480-01 22 22057704 22057704 G A YPEL1 Silent p.A75A 0.30 TCGA-CR-6480-01 22 46776788 46776788 G C CELSR1 Missense_Mutation p.P2385A 0.32 tolerated(0.51) benign(0.003) TCGA-CR-6480-01 22 50319135 50319135 G A CRELD2 Silent p.G362G 0.24 TCGA-CR-6480-01 22 50319169 50319169 G A CRELD2 Missense_Mutation p.E374K 0.32 tolerated(0.07) probably_damaging(0.932) TCGA-CR-6480-01 2 106498358 106498358 A G NCK2 Silent p.P267P 0.36 TCGA-CR-6480-01 2 149838001 149838001 G A KIF5C Missense_Mutation p.D499N 0.43 deleterious(0) probably_damaging(0.991) TCGA-CR-6480-01 2 160615841 160615841 G A MARCH7 Missense_Mutation p.E630K 0.40 deleterious(0.02) probably_damaging(0.954) TCGA-CR-6480-01 2 178592823 178592823 G A PDE11A Silent p.A622A 0.38 TCGA-CR-6480-01 2 179529438 179529438 G A TTN Missense_Mutation p.P12049S 0.11 TCGA-CR-6480-01 2 179529439 179529439 G T TTN Silent p.V12048V 0.10 TCGA-CR-6480-01 2 18765360 18765360 G A NT5C1B Silent p.F355F 0.29 TCGA-CR-6480-01 2 210867428 210867428 G A RPE Missense_Mutation p.D15N 0.29 deleterious(0.05) benign(0.058) TCGA-CR-6480-01 2 24302332 24302332 C T TP53I3 Silent p.L266L 0.28 TCGA-CR-6480-01 2 66796032 66796032 T C MEIS1 Intron 0.46 TCGA-CR-6480-01 2 74784055 74784055 C A DOK1 Silent p.L420L 0.35 TCGA-CR-6480-01 2 97215191 97215195 AGCAG - ARID5A Frame_Shift_Del 0.39 TCGA-CR-6480-01 3 113684007 113684007 C T KIAA1407 Missense_Mutation p.E936K 0.16 tolerated_low_confidence(0.23) benign(0) TCGA-CR-6480-01 3 119396148 119396148 G C COX17 Missense_Mutation p.L4V 0.24 tolerated(0.46) benign(0.002) TCGA-CR-6480-01 3 122629104 122629104 G A SEMA5B Silent p.F1168F 0.23 TCGA-CR-6480-01 3 124066089 124066089 G A KALRN Missense_Mutation p.D581N 0.17 tolerated(0.07) unknown(0) TCGA-CR-6480-01 3 124839586 124839586 C A SLC12A8 Intron 0.47 TCGA-CR-6480-01 3 151597659 151597659 G A SUCNR1 5'UTR 0.20 TCGA-CR-6480-01 3 179597776 179597776 G A PEX5L Missense_Mutation p.T149M 0.08 deleterious_low_confidence(0) benign(0.003) TCGA-CR-6480-01 3 197346715 197346715 C T AC024560.3 RNA 0.11 TCGA-CR-6480-01 3 197751552 197751552 G A LMLN Missense_Mutation p.E554K 0.18 deleterious(0) possibly_damaging(0.875) TCGA-CR-6480-01 3 52292653 52292653 C A WDR82 Missense_Mutation p.G271C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CR-6480-01 3 9476528 9476528 T G SETD5 Missense_Mutation p.V117G 0.23 tolerated(0.55) benign(0.047) TCGA-CR-6480-01 4 1326563 1326563 C A MAEA Missense_Mutation p.F225L 0.28 tolerated(0.18) benign(0.174) TCGA-CR-6480-01 4 169383027 169383027 C T DDX60L Silent p.L143L 0.28 TCGA-CR-6480-01 4 169383170 169383170 C T DDX60L Missense_Mutation p.D96N 0.39 tolerated(1) benign(0.002) TCGA-CR-6480-01 4 30723353 30723353 C T PCDH7 Silent p.F103F 0.55 TCGA-CR-6480-01 4 79403092 79403092 G A FRAS1 Missense_Mutation p.E2860K 0.53 benign(0.349) TCGA-CR-6480-01 4 88047256 88047256 C T AFF1 Missense_Mutation p.S860F 0.42 tolerated(0.56) unknown(0) TCGA-CR-6480-01 4 88047277 88047277 C T AFF1 Missense_Mutation p.S867L 0.41 tolerated(0.3) unknown(0) TCGA-CR-6480-01 5 118533530 118533530 G A DMXL1 Missense_Mutation p.E2542K 0.50 deleterious(0.02) possibly_damaging(0.624) TCGA-CR-6480-01 5 137599972 137599972 G A GFRA3 Silent p.T119T 0.33 TCGA-CR-6480-01 5 140250408 140250408 G A PCDHA11 Missense_Mutation p.G574S 0.46 tolerated_low_confidence(0.29) benign(0.023) TCGA-CR-6480-01 5 38504091 38504091 G A LIFR Missense_Mutation p.S475L 0.37 tolerated(0.09) benign(0.011) TCGA-CR-6480-01 6 18122141 18122141 C G NHLRC1 Missense_Mutation p.D233H 0.25 deleterious(0) probably_damaging(1) TCGA-CR-6480-01 6 28402458 28402458 G A ZSCAN23 Silent p.A318A 0.36 TCGA-CR-6480-01 6 56496810 56496810 G C DST Silent p.L741L 0.29 TCGA-CR-6480-01 6 8421006 8421006 C T SLC35B3 Silent p.L210L 0.26 TCGA-CR-6480-01 7 102743916 102743916 C T NAPEPLD Missense_Mutation p.G381E 0.32 deleterious(0) probably_damaging(0.999) TCGA-CR-6480-01 7 106826251 106826251 C G HBP1 Missense_Mutation p.S135C 0.39 deleterious(0) possibly_damaging(0.702) TCGA-CR-6480-01 7 107880487 107880487 T C NRCAM Missense_Mutation p.K8E 0.38 tolerated(0.33) benign(0.002) TCGA-CR-6480-01 7 124481048 124481048 C T POT1 Missense_Mutation p.E450K 0.28 tolerated(0.19) benign(0.034) TCGA-CR-6480-01 7 128359080 128359080 T A FAM71F1 Silent p.I210I 0.04 TCGA-CR-6480-01 7 128359081 128359081 C G FAM71F1 Missense_Mutation p.L211V 0.04 tolerated(0.4) possibly_damaging(0.748) TCGA-CR-6480-01 7 140266910 140266910 T A DENND2A Missense_Mutation p.E585D 0.55 deleterious(0.01) probably_damaging(0.988) TCGA-CR-6480-01 7 5568921 5568921 G C ACTB Missense_Mutation p.N78K 0.40 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-CR-6480-01 7 70597882 70597882 G A WBSCR17 Missense_Mutation p.A32T 0.37 tolerated_low_confidence(1) benign(0) TCGA-CR-6480-01 7 8196806 8196806 A T ICA1 Silent p.T248T 0.06 TCGA-CR-6480-01 8 144992204 144992204 G A PLEC Silent p.L4066L 0.44 TCGA-CR-6480-01 8 17396300 17396300 G C SLC7A2 5'UTR 0.27 TCGA-CR-6480-01 8 35616853 35616853 G A UNC5D Missense_Mutation p.E727K 0.34 deleterious(0) probably_damaging(0.997) TCGA-CR-6480-01 8 93027012 93027012 T C RUNX1T1 Missense_Mutation p.N99S 0.08 tolerated(0.12) benign(0.024) TCGA-CR-6480-01 9 129157913 129157913 C T MVB12B Missense_Mutation p.S200L 0.38 tolerated(0.25) benign(0.419) TCGA-CR-6480-01 9 137734077 137734077 C T COL5A1 Silent p.I1815I 0.34 TCGA-CR-6480-01 9 33030454 33030454 A G DNAJA1 Silent p.K144K 0.57 TCGA-CR-6480-01 9 36117110 36117110 A G RECK Missense_Mutation p.E730G 0.08 tolerated(0.06) possibly_damaging(0.76) TCGA-CR-6480-01 9 39085944 39085944 C T CNTNAP3 Intron 0.50 TCGA-CR-6480-01 9 5968103 5968103 G C KIAA2026 Missense_Mutation p.L710V 0.33 tolerated(0.35) possibly_damaging(0.879) TCGA-CR-6480-01 9 5968206 5968206 G A KIAA2026 Silent p.L675L 0.35 TCGA-CR-6480-01 9 72338300 72338300 C G PTAR1 Missense_Mutation p.E297Q 0.40 tolerated(0.09) benign(0.056) TCGA-CR-6480-01 9 8484233 8484233 G A PTPRD Missense_Mutation p.T1100M 0.32 deleterious(0.02) possibly_damaging(0.776) TCGA-CR-6480-01 X 153277293 153277293 C T IRAK1 3'UTR 0.74 TCGA-CR-6480-01 X 77380864 77380864 G T PGK1 Silent p.T385T 0.68 TCGA-CR-6480-01 X 85211360 85211360 C T CHM Missense_Mutation p.E322K 0.80 deleterious(0.03) benign(0.324) TCGA-CR-6481-01 10 102891411 102891411 C T TLX1 Missense_Mutation p.S38L 0.19 tolerated(0.24) benign(0.019) TCGA-CR-6481-01 10 105194617 105194617 G A PDCD11 Missense_Mutation p.E1244K 0.18 tolerated(0.93) benign(0.001) TCGA-CR-6481-01 10 105819884 105819884 G A COL17A1 Silent p.I378I 0.11 TCGA-CR-6481-01 10 116213165 116213165 G A ABLIM1 Nonsense_Mutation p.Q507* 0.10 TCGA-CR-6481-01 10 117059722 117059722 C T ATRNL1 Missense_Mutation p.S865F 0.24 deleterious(0.02) possibly_damaging(0.534) TCGA-CR-6481-01 10 120801689 120801689 C T EIF3A Missense_Mutation p.D1115N 0.16 deleterious_low_confidence(0.01) benign(0.299) TCGA-CR-6481-01 10 123844325 123844325 G C TACC2 Silent p.S770S 0.17 TCGA-CR-6481-01 10 124214231 124214231 C T ARMS2 5'UTR 0.09 TCGA-CR-6481-01 10 125805644 125805644 G A CHST15 Missense_Mutation p.H29Y 0.12 tolerated_low_confidence(0.14) benign(0.002) TCGA-CR-6481-01 10 13629084 13629084 G A PRPF18 5'UTR 0.17 TCGA-CR-6481-01 10 15138708 15138708 C T C10orf111 Missense_Mutation p.R39K 0.21 deleterious_low_confidence(0) unknown(0) TCGA-CR-6481-01 10 17275592 17275592 G C VIM Missense_Mutation p.D211H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 10 18250518 18250518 A T SLC39A12 Missense_Mutation p.E90D 0.15 tolerated(0.06) possibly_damaging(0.9) TCGA-CR-6481-01 10 22209807 22209807 C A DNAJC1 Nonsense_Mutation p.E153* 0.15 TCGA-CR-6481-01 10 27306526 27306526 C G ANKRD26 Missense_Mutation p.E1471Q 0.18 tolerated(0.06) possibly_damaging(0.663) TCGA-CR-6481-01 10 35929113 35929113 C T FZD8 Silent p.V415V 0.19 TCGA-CR-6481-01 10 38344019 38344019 G A ZNF33A Missense_Mutation p.D323N 0.14 tolerated(0.33) benign(0.004) TCGA-CR-6481-01 10 61122255 61122255 T C FAM13C 5'UTR 0.23 TCGA-CR-6481-01 10 61819457 61819457 C G ANK3 Intron 0.11 TCGA-CR-6481-01 10 61840377 61840377 C T ANK3 Splice_Site p.X1451_splice 0.13 TCGA-CR-6481-01 10 63173346 63173346 G A TMEM26 Intron 0.17 TCGA-CR-6481-01 10 72358020 72358020 T A PRF1 Missense_Mutation p.D486V 0.21 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 10 7759731 7759731 C T ITIH2 Missense_Mutation p.R204W 0.14 deleterious(0) probably_damaging(0.934) TCGA-CR-6481-01 10 79614066 79614066 G A DLG5 Missense_Mutation p.S200L 0.19 tolerated(0.23) probably_damaging(0.997) TCGA-CR-6481-01 10 79784393 79784393 C T POLR3A Missense_Mutation p.D187N 0.16 tolerated(0.13) benign(0.014) TCGA-CR-6481-01 10 81850682 81850682 G A TMEM254 3'UTR 0.15 TCGA-CR-6481-01 10 85994045 85994045 C T LRIT1 Missense_Mutation p.E227K 0.16 deleterious(0.01) possibly_damaging(0.821) TCGA-CR-6481-01 10 95660597 95660597 G A SLC35G1 Missense_Mutation p.A150T 0.17 deleterious(0) probably_damaging(0.971) TCGA-CR-6481-01 10 97373783 97373783 C T ALDH18A1 Missense_Mutation p.E581K 0.04 deleterious(0) probably_damaging(0.994) TCGA-CR-6481-01 10 98133495 98133495 C T TLL2 Silent p.P840P 0.16 TCGA-CR-6481-01 10 98392752 98392752 C T PIK3AP1 Intron 0.15 TCGA-CR-6481-01 11 100061931 100061931 C T CNTN5 Nonsense_Mutation p.R552* 0.22 TCGA-CR-6481-01 11 108106437 108106437 C T ATM Silent p.I124I 0.26 TCGA-CR-6481-01 11 111636039 111636039 C T PPP2R1B Missense_Mutation p.E62K 0.11 deleterious(0) possibly_damaging(0.755) TCGA-CR-6481-01 11 112071361 112071361 C T BCO2 Silent p.F297F 0.18 TCGA-CR-6481-01 11 118633977 118633977 G T DDX6 Missense_Mutation p.L229I 0.11 tolerated(0.05) possibly_damaging(0.759) TCGA-CR-6481-01 11 131781512 131781512 C T NTM Missense_Mutation p.T46M 0.18 deleterious(0.02) benign(0.396) TCGA-CR-6481-01 11 17098993 17098993 G C RPS13 Missense_Mutation p.R19G 0.24 deleterious(0.02) possibly_damaging(0.793) TCGA-CR-6481-01 11 17531001 17531001 C G USH1C Missense_Mutation p.D639H 0.15 tolerated_low_confidence(0.12) benign(0.28) TCGA-CR-6481-01 11 2433448 2433448 C T TRPM5 Silent p.K797K 0.21 TCGA-CR-6481-01 11 46564069 46564069 G A AMBRA1 Nonsense_Mutation p.Q410* 0.18 TCGA-CR-6481-01 11 46564092 46564092 G C AMBRA1 Missense_Mutation p.S402W 0.16 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-CR-6481-01 11 46694332 46694332 G C ATG13 3'Flank 0.41 TCGA-CR-6481-01 11 587351 587351 G A PHRF1 Missense_Mutation p.D103N 0.24 deleterious(0) possibly_damaging(0.481) TCGA-CR-6481-01 11 587453 587453 G A PHRF1 Missense_Mutation p.E137K 0.14 deleterious(0) possibly_damaging(0.567) TCGA-CR-6481-01 11 59604756 59604756 G C GIF Silent p.L254L 0.20 TCGA-CR-6481-01 11 60107353 60107353 G C MS4A6E Silent p.L123L 0.13 TCGA-CR-6481-01 11 65147398 65147398 C G SLC25A45 Missense_Mutation p.Q31H 0.13 deleterious(0) probably_damaging(0.997) TCGA-CR-6481-01 11 65649791 65649791 C T CTSW Silent p.I144I 0.18 TCGA-CR-6481-01 11 65650706 65650706 C G CTSW Missense_Mutation p.I277M 0.20 tolerated(0.11) possibly_damaging(0.588) TCGA-CR-6481-01 11 67220094 67220094 G A GPR152 Silent p.V34V 0.29 TCGA-CR-6481-01 11 67399081 67399081 G A TBX10 Nonsense_Mutation p.Q385* 0.31 TCGA-CR-6481-01 11 73074248 73074248 C T ARHGEF17 Intron 0.38 TCGA-CR-6481-01 11 73675980 73675980 G C DNAJB13 Missense_Mutation p.R131P 0.12 tolerated(0.09) benign(0.006) TCGA-CR-6481-01 11 801315 801315 C G PIDD Missense_Mutation p.E511D 0.26 tolerated(0.21) possibly_damaging(0.74) TCGA-CR-6481-01 11 86153891 86153891 C T ME3 Missense_Mutation p.R542Q 0.16 tolerated(0.22) benign(0.003) TCGA-CR-6481-01 11 8953862 8953862 C T C11orf16 5'UTR 0.19 TCGA-CR-6481-01 12 104336982 104336982 C G HSP90B1 Missense_Mutation p.A592G 0.14 deleterious(0) probably_damaging(0.957) TCGA-CR-6481-01 12 108091362 108091362 G C PWP1 Missense_Mutation p.K244N 0.31 deleterious(0.05) probably_damaging(0.945) TCGA-CR-6481-01 12 110252302 110252302 C T TRPV4 Silent p.K100K 0.14 TCGA-CR-6481-01 12 11138872 11138872 C T TAS2R50 Silent p.L196L 0.14 TCGA-CR-6481-01 12 111776184 111776184 G A CUX2 Silent p.L1097L 0.19 TCGA-CR-6481-01 12 113664628 113664628 C T TPCN1 Missense_Mutation p.H63Y 0.21 deleterious_low_confidence(0.01) benign(0.021) TCGA-CR-6481-01 12 11420963 11420963 G A PRB3 Missense_Mutation p.R74C 0.11 deleterious(0.01) unknown(0) TCGA-CR-6481-01 12 117627050 117627050 C G FBXO21 Missense_Mutation p.K119N 0.12 deleterious(0.02) benign(0.076) TCGA-CR-6481-01 12 118405983 118405983 C A KSR2 Silent p.L26L 0.08 TCGA-CR-6481-01 12 120204897 120204897 C G CIT Missense_Mutation p.K766N 0.16 deleterious(0.03) possibly_damaging(0.58) TCGA-CR-6481-01 12 12043951 12043951 G A ETV6 Missense_Mutation p.E444K 0.17 tolerated(0.09) benign(0.313) TCGA-CR-6481-01 12 123804454 123804454 C G SBNO1 Missense_Mutation p.G931A 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-CR-6481-01 12 123805101 123805101 C T SBNO1 Missense_Mutation p.E849K 0.19 tolerated(0.08) benign(0.437) TCGA-CR-6481-01 12 123810101 123810101 C T SBNO1 Missense_Mutation p.E641K 0.13 deleterious(0.04) possibly_damaging(0.887) TCGA-CR-6481-01 12 12629840 12629840 G A DUSP16 Missense_Mutation p.S642L 0.15 deleterious(0) benign(0.367) TCGA-CR-6481-01 12 129558534 129558534 C A TMEM132D Missense_Mutation p.R1062S 0.17 tolerated(0.16) benign(0) TCGA-CR-6481-01 12 130184842 130184842 C T TMEM132D Missense_Mutation p.A161T 0.11 tolerated(0.32) benign(0.008) TCGA-CR-6481-01 12 132404537 132404537 G A ULK1 Silent p.L939L 0.10 TCGA-CR-6481-01 12 132498089 132498089 C T EP400 Silent p.L1222L 0.12 TCGA-CR-6481-01 12 133358996 133358996 C T GOLGA3 Silent p.E1117E 0.17 TCGA-CR-6481-01 12 15090892 15090892 G C ERP27 Missense_Mutation p.F63L 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-CR-6481-01 12 22069956 22069956 G C ABCC9 Nonsense_Mutation p.S163* 0.14 TCGA-CR-6481-01 12 30876222 30876222 G A CAPRIN2 Nonsense_Mutation p.Q672* 0.09 TCGA-CR-6481-01 12 32873662 32873662 C G DNM1L Missense_Mutation p.L269V 0.14 deleterious(0.01) possibly_damaging(0.85) TCGA-CR-6481-01 12 39967597 39967597 C T ABCD2 Missense_Mutation p.D642N 0.09 deleterious(0) probably_damaging(0.93) TCGA-CR-6481-01 12 43846363 43846363 G A ADAMTS20 Silent p.I632I 0.14 TCGA-CR-6481-01 12 44782467 44782467 G C TMEM117 3'UTR 0.10 TCGA-CR-6481-01 12 4721834 4721834 C T DYRK4 Missense_Mutation p.S424F 0.14 tolerated(0.07) benign(0.016) TCGA-CR-6481-01 12 48179624 48179624 C T HDAC7 Missense_Mutation p.A873T 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-CR-6481-01 12 49742881 49742881 C G DNAJC22 Missense_Mutation p.L76V 0.14 tolerated(0.37) benign(0.006) TCGA-CR-6481-01 12 498349 498349 G C KDM5A 5'UTR 0.17 TCGA-CR-6481-01 12 49944103 49944103 G A KCNH3 Missense_Mutation p.A637T 0.13 deleterious(0) probably_damaging(0.998) TCGA-CR-6481-01 12 50152485 50152485 G A TMBIM6 Silent p.L209L 0.19 TCGA-CR-6481-01 12 51382088 51382088 G A SLC11A2 3'UTR 0.16 TCGA-CR-6481-01 12 52881470 52881470 G C KRT6A 3'UTR 0.12 TCGA-CR-6481-01 12 53895890 53895890 G A TARBP2 Missense_Mutation p.D49N 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-CR-6481-01 12 56737683 56737683 C T STAT2 Missense_Mutation p.G780E 0.05 tolerated_low_confidence(1) benign(0.007) TCGA-CR-6481-01 12 58019209 58019209 G A SLC26A10 Missense_Mutation p.R497Q 0.17 tolerated(1) benign(0.028) TCGA-CR-6481-01 12 66357047 66357047 C G HMGA2 Nonsense_Mutation p.S102* 0.15 TCGA-CR-6481-01 12 6966015 6966015 G A USP5 Silent p.P243P 0.15 TCGA-CR-6481-01 12 7169796 7169796 C T C1S Missense_Mutation p.S8L 0.11 tolerated(0.42) benign(0.08) TCGA-CR-6481-01 12 72068122 72068122 C A THAP2 Missense_Mutation p.L71I 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-CR-6481-01 12 72335507 72335507 C G TPH2 Silent p.L83L 0.09 TCGA-CR-6481-01 12 75437009 75437009 G A KCNC2 Missense_Mutation p.S598F 0.10 deleterious_low_confidence(0) benign(0.045) TCGA-CR-6481-01 12 996423 996423 C T WNK1 Silent p.L1773L 0.13 TCGA-CR-6481-01 13 25263408 25263408 G A ATP12A Silent p.L147L 0.09 TCGA-CR-6481-01 13 26129126 26129126 C T ATP8A2 Intron 0.11 TCGA-CR-6481-01 13 38172937 38172937 C T POSTN 5'UTR 0.25 TCGA-CR-6481-01 13 39588581 39588581 G C PROSER1 Missense_Mutation p.P270A 0.14 deleterious(0.02) possibly_damaging(0.79) TCGA-CR-6481-01 13 49771891 49771891 G A FNDC3A Missense_Mutation p.E791K 0.22 deleterious(0.01) benign(0.326) TCGA-CR-6481-01 13 79952987 79952987 C G RBM26 Missense_Mutation p.D43H 0.18 deleterious(0) unknown(0) TCGA-CR-6481-01 14 105259081 105259081 G C AKT1 5'UTR 0.20 TCGA-CR-6481-01 14 105404375 105404375 C G AHNAK2 3'UTR 0.19 TCGA-CR-6481-01 14 105936499 105936499 C T MTA1 Missense_Mutation p.R699W 0.22 tolerated(0.06) possibly_damaging(0.451) TCGA-CR-6481-01 14 34145537 34145537 G A NPAS3 Missense_Mutation p.E227K 0.15 tolerated(0.14) possibly_damaging(0.517) TCGA-CR-6481-01 14 36143457 36143457 C T RALGAPA1 Missense_Mutation p.D1110N 0.23 deleterious(0) probably_damaging(0.998) TCGA-CR-6481-01 14 45606317 45606317 G C FANCM Missense_Mutation p.R185T 0.11 deleterious(0) possibly_damaging(0.891) TCGA-CR-6481-01 14 45644452 45644452 C G FANCM Missense_Mutation p.S832C 0.21 tolerated(0.18) benign(0.024) TCGA-CR-6481-01 14 45665674 45665674 C T FANCM Silent p.F1880F 0.19 TCGA-CR-6481-01 14 51208379 51208379 C T NIN Missense_Mutation p.R1790Q 0.16 tolerated(0.23) benign(0.042) TCGA-CR-6481-01 14 54875501 54875501 G C CDKN3 Missense_Mutation p.D63H 0.13 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 14 58932685 58932685 G A KIAA0586 Missense_Mutation p.R784K 0.03 tolerated(0.15) possibly_damaging(0.599) TCGA-CR-6481-01 14 65198093 65198093 C G PLEKHG3 Silent p.L232L 0.14 TCGA-CR-6481-01 14 73566393 73566393 G T RBM25 Nonsense_Mutation p.E268* 0.17 TCGA-CR-6481-01 14 73989358 73989358 G A HEATR4 Missense_Mutation p.H167Y 0.15 tolerated(0.91) benign(0.001) TCGA-CR-6481-01 14 75568401 75568401 C T NEK9 Missense_Mutation p.R600H 0.10 tolerated(0.27) benign(0.01) TCGA-CR-6481-01 14 78146284 78146284 C T ALKBH1 Missense_Mutation p.R162Q 0.13 deleterious(0.03) probably_damaging(0.961) TCGA-CR-6481-01 14 94394757 94394757 G A FAM181A Silent p.Q104Q 0.21 TCGA-CR-6481-01 14 94674900 94674900 C T PPP4R4 Silent p.V97V 0.12 TCGA-CR-6481-01 15 101109585 101109585 C T LINS Missense_Mutation p.R711K 0.15 tolerated(1) benign(0.012) TCGA-CR-6481-01 15 102346152 102346152 C T OR4F6 Missense_Mutation p.T77I 0.16 tolerated_low_confidence(0.2) benign(0.003) TCGA-CR-6481-01 15 25463692 25463692 C G SNORD115-27 5'Flank 0.16 TCGA-CR-6481-01 15 25470286 25470286 G A SNORD115-27 3'Flank 0.10 TCGA-CR-6481-01 15 28413555 28413555 C G HERC2 Missense_Mutation p.E3471Q 0.16 benign(0.002) TCGA-CR-6481-01 15 28459835 28459835 G A HERC2 Silent p.L2108L 0.14 TCGA-CR-6481-01 15 31323259 31323259 C T TRPM1 Nonsense_Mutation p.W1035* 0.10 TCGA-CR-6481-01 15 31362189 31362189 G A TRPM1 Intron 0.14 TCGA-CR-6481-01 15 33359906 33359906 G A FMN1 Silent p.F60F 0.12 TCGA-CR-6481-01 15 34648777 34648777 C T NUTM1 Silent p.T828T 0.15 TCGA-CR-6481-01 15 41523623 41523623 G C CHP1 Missense_Mutation p.E15Q 0.24 tolerated(0.39) benign(0.01) TCGA-CR-6481-01 15 42110227 42110227 G C MAPKBP1 Missense_Mutation p.G648A 0.16 tolerated(0.06) possibly_damaging(0.742) TCGA-CR-6481-01 15 43552604 43552604 C G TGM5 Missense_Mutation p.E62Q 0.09 deleterious(0.03) probably_damaging(0.938) TCGA-CR-6481-01 15 43814069 43814069 G C MAP1A Missense_Mutation p.G133A 0.19 probably_damaging(0.998) TCGA-CR-6481-01 15 43827592 43827592 G A PPIP5K1 Silent p.F1194F 0.15 TCGA-CR-6481-01 15 51790872 51790872 G A DMXL2 Missense_Mutation p.H1517Y 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-CR-6481-01 15 71535293 71535293 C T THSD4 Missense_Mutation p.S257L 0.20 tolerated(0.07) benign(0.108) TCGA-CR-6481-01 15 76496185 76496185 C G C15orf27 Silent p.L375L 0.17 TCGA-CR-6481-01 15 76496280 76496280 C T C15orf27 Missense_Mutation p.S407F 0.21 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-CR-6481-01 15 81575003 81575003 G A IL16 Missense_Mutation p.G369S 0.17 tolerated(0.09) probably_damaging(1) TCGA-CR-6481-01 15 85406114 85406114 C T ALPK3 Missense_Mutation p.L1662F 0.14 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 15 85406847 85406847 C T ALPK3 Missense_Mutation p.A1694V 0.21 tolerated(1) benign(0.101) TCGA-CR-6481-01 15 89173347 89173347 G A AEN Missense_Mutation p.R267Q 0.14 tolerated(0.07) benign(0.046) TCGA-CR-6481-01 16 1398119 1398119 C T BAIAP3 Missense_Mutation p.R1093C 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-CR-6481-01 16 1399439 1399439 C T TSR3 Silent p.%3D 0.11 TCGA-CR-6481-01 16 1399524 1399524 C T TSR3 Missense_Mutation p.E285K 0.14 tolerated_low_confidence(0.28) benign(0.002) TCGA-CR-6481-01 16 16286777 16286777 G A ABCC6 Silent p.L447L 0.19 TCGA-CR-6481-01 16 1816351 1816351 C A MAPK8IP3 Silent p.L919L 0.12 TCGA-CR-6481-01 16 21213295 21213295 G A ZP2 Missense_Mutation p.T446M 0.16 tolerated(0.07) benign(0.017) TCGA-CR-6481-01 16 24950751 24950751 G A ARHGAP17 Missense_Mutation p.S553F 0.16 tolerated(0.15) benign(0.396) TCGA-CR-6481-01 16 27495572 27495572 G A GTF3C1 Missense_Mutation p.R1321C 0.30 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 16 2808519 2808519 G - SRRM2 Frame_Shift_Del p.K189Rfs*198 0.11 TCGA-CR-6481-01 16 2811883 2811883 G T SRRM2 Nonsense_Mutation p.E452* 0.08 TCGA-CR-6481-01 16 30537313 30537313 C T ZNF768 Missense_Mutation p.E50K 0.12 deleterious_low_confidence(0) benign(0.3) TCGA-CR-6481-01 16 3712847 3712847 C T TRAP1 Intron 0.16 TCGA-CR-6481-01 16 3830809 3830809 G A CREBBP Missense_Mutation p.P583S 0.10 benign(0.306) TCGA-CR-6481-01 16 4835884 4835884 C A SEPT12 Nonsense_Mutation p.E100* 0.10 TCGA-CR-6481-01 16 57597888 57597888 C G GPR114 Missense_Mutation p.F142L 0.13 deleterious(0.02) possibly_damaging(0.62) TCGA-CR-6481-01 16 57598964 57598964 C G GPR114 Missense_Mutation p.L150V 0.12 tolerated(0.31) benign(0.101) TCGA-CR-6481-01 16 58704061 58704061 G A SLC38A7 Silent p.L414L 0.23 TCGA-CR-6481-01 16 599044 599044 G A CAPN15 Missense_Mutation p.G501S 0.24 tolerated(0.46) probably_damaging(1) TCGA-CR-6481-01 16 67680670 67680670 C T RLTPR Nonsense_Mutation p.R174* 0.10 TCGA-CR-6481-01 16 67876995 67876995 C G THAP11 Missense_Mutation p.P180A 0.11 tolerated_low_confidence(0.98) benign(0.002) TCGA-CR-6481-01 16 67877127 67877127 C T THAP11 Missense_Mutation p.P224S 0.10 tolerated(0.8) benign(0.007) TCGA-CR-6481-01 16 67969349 67969349 C T PSMB10 Missense_Mutation p.E178K 0.22 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 16 68729708 68729708 G A CDH3 Missense_Mutation p.G721D 0.09 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 16 71510032 71510032 C A ZNF19 Missense_Mutation p.D140Y 0.15 tolerated(0.12) benign(0.188) TCGA-CR-6481-01 16 72188118 72188118 C G PMFBP1 Missense_Mutation p.E136Q 0.15 deleterious(0.02) probably_damaging(0.951) TCGA-CR-6481-01 16 81209259 81209259 G C PKD1L2 Missense_Mutation p.S101C 0.18 deleterious(0.04) probably_damaging(0.983) TCGA-CR-6481-01 16 89597147 89597147 C T SPG7 Silent p.V306V 0.09 TCGA-CR-6481-01 16 89877208 89877208 C G FANCA Missense_Mutation p.K143N 0.15 deleterious(0.03) benign(0.403) TCGA-CR-6481-01 16 9943615 9943615 G C GRIN2A Missense_Mutation p.I442M 0.18 tolerated(0.23) benign(0.062) TCGA-CR-6481-01 17 15965063 15965063 C T NCOR1 Missense_Mutation p.E1845K 0.17 benign(0.101) TCGA-CR-6481-01 17 17409126 17409126 G A PEMT Silent p.S230S 0.15 TCGA-CR-6481-01 17 26518200 26518200 G A NLK Missense_Mutation p.D464N 0.15 tolerated(0.09) possibly_damaging(0.655) TCGA-CR-6481-01 17 29161435 29161435 G C ATAD5 Missense_Mutation p.K112N 0.10 deleterious(0.01) possibly_damaging(0.776) TCGA-CR-6481-01 17 29161585 29161585 G C ATAD5 Missense_Mutation p.K162N 0.07 tolerated(0.06) benign(0.027) TCGA-CR-6481-01 17 29161714 29161714 G C ATAD5 Missense_Mutation p.L205F 0.15 tolerated(0.12) possibly_damaging(0.563) TCGA-CR-6481-01 17 29161793 29161793 G C ATAD5 Missense_Mutation p.D232H 0.11 deleterious(0.04) benign(0.013) TCGA-CR-6481-01 17 29162131 29162131 G A ATAD5 Silent p.L344L 0.17 TCGA-CR-6481-01 17 29162168 29162168 G A ATAD5 Missense_Mutation p.D357N 0.13 tolerated(0.12) benign(0.021) TCGA-CR-6481-01 17 29162199 29162199 G C ATAD5 Missense_Mutation p.R367T 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 17 29162272 29162272 G A ATAD5 Silent p.V391V 0.17 TCGA-CR-6481-01 17 29162420 29162420 G A ATAD5 Missense_Mutation p.D441N 0.14 tolerated(0.94) benign(0.001) TCGA-CR-6481-01 17 29162726 29162726 G A ATAD5 Missense_Mutation p.D543N 0.22 tolerated(0.23) benign(0.006) TCGA-CR-6481-01 17 29164285 29164285 G A ATAD5 Missense_Mutation p.E677K 0.18 tolerated(0.52) benign(0.001) TCGA-CR-6481-01 17 30349317 30349317 G A LRRC37B Silent p.L384L 0.14 TCGA-CR-6481-01 17 30376174 30376174 G A LRRC37B Missense_Mutation p.E813K 0.16 tolerated(0.69) benign(0.006) TCGA-CR-6481-01 17 36704795 36704795 C G SRCIN1 Missense_Mutation p.E1090Q 0.15 tolerated(0.87) benign(0.426) TCGA-CR-6481-01 17 36704826 36704826 C T SRCIN1 Silent p.E1079E 0.16 TCGA-CR-6481-01 17 36876644 36876644 G C MLLT6 Silent p.A725A 0.13 TCGA-CR-6481-01 17 37826388 37826388 G C PNMT Missense_Mutation p.D199H 0.12 tolerated(0.13) benign(0.01) TCGA-CR-6481-01 17 37900456 37900456 C A GRB7 Missense_Mutation p.S289Y 0.08 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 17 38348898 38348898 C A RAPGEFL1 Missense_Mutation p.S360Y 0.14 deleterious(0.01) benign(0.34) TCGA-CR-6481-01 17 42092252 42092252 G A TMEM101 Silent p.L23L 0.25 TCGA-CR-6481-01 17 42153206 42153206 G A G6PC3 Missense_Mutation p.G279E 0.18 tolerated(0.41) benign(0.23) TCGA-CR-6481-01 17 42743884 42743884 C T C17orf104 Missense_Mutation p.S202L 0.11 tolerated(0.24) possibly_damaging(0.903) TCGA-CR-6481-01 17 43171126 43171126 C G NMT1 Silent p.P153P 0.15 TCGA-CR-6481-01 17 4457189 4457189 C G MYBBP1A Silent p.S159S 0.15 TCGA-CR-6481-01 17 4510765 4510765 C T SMTNL2 Silent p.L457L 0.20 TCGA-CR-6481-01 17 46690757 46690757 G C HOXB8 Missense_Mutation p.S180W 0.12 deleterious(0) probably_damaging(0.998) TCGA-CR-6481-01 17 47886529 47886529 C G KAT7 Missense_Mutation p.H238D 0.17 tolerated(0.59) benign(0.035) TCGA-CR-6481-01 17 5392414 5392414 C G MIS12 Missense_Mutation p.L78V 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CR-6481-01 17 58282903 58282903 C T USP32 Missense_Mutation p.E1052K 0.10 tolerated(0.16) benign(0.006) TCGA-CR-6481-01 17 60598187 60598187 G C TLK2 Missense_Mutation p.L45F 0.13 tolerated_low_confidence(0.05) probably_damaging(0.956) TCGA-CR-6481-01 17 61776232 61776232 C T LIMD2 Missense_Mutation p.E51K 0.13 deleterious(0) probably_damaging(0.997) TCGA-CR-6481-01 17 64683318 64683318 G A PRKCA Missense_Mutation p.E207K 0.18 tolerated(0.7) benign(0.02) TCGA-CR-6481-01 17 65147302 65147302 G A HELZ Missense_Mutation p.P739L 0.18 deleterious(0.03) probably_damaging(0.969) TCGA-CR-6481-01 17 66039309 66039309 C T KPNA2 Missense_Mutation p.P254S 0.14 deleterious(0) probably_damaging(0.965) TCGA-CR-6481-01 17 66042035 66042035 G A KPNA2 Missense_Mutation p.E499K 0.18 deleterious(0.04) possibly_damaging(0.8) TCGA-CR-6481-01 17 73237033 73237033 G A GGA3 Missense_Mutation p.S351L 0.10 tolerated(0.32) benign(0.003) TCGA-CR-6481-01 17 73560499 73560499 C T LLGL2 Missense_Mutation p.S316L 0.20 deleterious(0) possibly_damaging(0.904) TCGA-CR-6481-01 17 73887415 73887415 C T TRIM65 Silent p.L333L 0.30 TCGA-CR-6481-01 17 76045388 76045388 G A TNRC6C Missense_Mutation p.R82K 0.16 tolerated(0.21) benign(0.396) TCGA-CR-6481-01 17 76967746 76967746 G A LGALS3BP Missense_Mutation p.S557F 0.07 tolerated(0.33) probably_damaging(0.959) TCGA-CR-6481-01 17 78156549 78156549 C T CARD14 Silent p.V103V 0.19 TCGA-CR-6481-01 17 78320513 78320513 C G RNF213 Nonsense_Mutation p.S2793* 0.29 TCGA-CR-6481-01 17 80674690 80674690 C A FN3KRP Nonsense_Mutation p.S20* 0.19 TCGA-CR-6481-01 17 80788498 80788498 C T ZNF750 Silent p.P564P 0.20 TCGA-CR-6481-01 17 80789280 80789280 C T ZNF750 Missense_Mutation p.E351K 0.20 deleterious(0.01) possibly_damaging(0.725) TCGA-CR-6481-01 17 80790150 80790150 G A ZNF750 Nonsense_Mutation p.R61* 0.18 TCGA-CR-6481-01 17 8700953 8700953 G A MFSD6L Nonsense_Mutation p.R496* 0.21 TCGA-CR-6481-01 18 31324832 31324832 G A ASXL3 Missense_Mutation p.E1674K 0.15 benign(0.185) TCGA-CR-6481-01 18 31325319 31325319 G A ASXL3 Missense_Mutation p.G1836E 0.17 probably_damaging(1) TCGA-CR-6481-01 18 33689584 33689584 T A SLC39A6 Missense_Mutation p.H747L 0.14 deleterious(0) probably_damaging(0.998) TCGA-CR-6481-01 18 57363888 57363888 G C CCBE1 Missense_Mutation p.S62C 0.10 tolerated(0.09) benign(0.156) TCGA-CR-6481-01 18 627346 627346 G A CLUL1 Missense_Mutation p.E225K 0.12 deleterious(0.01) possibly_damaging(0.593) TCGA-CR-6481-01 18 8796233 8796233 G C SOGA2 Missense_Mutation p.E672Q 0.11 tolerated(0.13) possibly_damaging(0.477) TCGA-CR-6481-01 18 8796331 8796331 G C SOGA2 Missense_Mutation p.K704N 0.12 deleterious(0) possibly_damaging(0.735) TCGA-CR-6481-01 19 10132365 10132365 C G RDH8 Silent p.L312L 0.11 TCGA-CR-6481-01 19 10204253 10204253 C T ANGPTL6 Missense_Mutation p.E332K 0.24 deleterious(0) probably_damaging(0.984) TCGA-CR-6481-01 19 10204273 10204273 C T ANGPTL6 Missense_Mutation p.G325E 0.19 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 19 11725686 11725686 C T ZNF627 Missense_Mutation p.P59S 0.11 tolerated(0.32) benign(0.034) TCGA-CR-6481-01 19 12429881 12429881 G A ZNF563 Missense_Mutation p.H320Y 0.14 tolerated(1) probably_damaging(0.979) TCGA-CR-6481-01 19 16611792 16611792 C G C19orf44 Silent p.L63L 0.12 TCGA-CR-6481-01 19 16875993 16875993 C A NWD1 Silent p.L800L 0.12 TCGA-CR-6481-01 19 17691701 17691701 G A COLGALT1 Missense_Mutation p.D530N 0.15 tolerated(0.72) benign(0.008) TCGA-CR-6481-01 19 17875220 17875220 G A FCHO1 Silent p.A52A 0.19 TCGA-CR-6481-01 19 18497038 18497038 G C GDF15 Missense_Mutation p.Q13H 0.12 tolerated_low_confidence(0.19) benign(0.201) TCGA-CR-6481-01 19 20117110 20117110 C T ZNF682 Missense_Mutation p.E401K 0.17 deleterious(0.02) possibly_damaging(0.844) TCGA-CR-6481-01 19 2834250 2834250 G C ZNF554 Missense_Mutation p.L339F 0.12 tolerated(0.17) probably_damaging(0.996) TCGA-CR-6481-01 19 2834551 2834551 G A ZNF554 Missense_Mutation p.E440K 0.16 tolerated(0.06) benign(0.011) TCGA-CR-6481-01 19 35551551 35551551 G T HPN Missense_Mutation p.R214L 0.20 deleterious(0.01) benign(0.081) TCGA-CR-6481-01 19 35828818 35828818 G A CD22 Silent p.T293T 0.08 TCGA-CR-6481-01 19 36033280 36033280 C G GAPDHS Missense_Mutation p.T170R 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-6481-01 19 37975067 37975067 G C ZNF570 Missense_Mutation p.K181N 0.18 tolerated(0.05) benign(0.006) TCGA-CR-6481-01 19 39437135 39437135 C G CTC-360G5.8 Missense_Mutation p.Q83H 0.20 deleterious_low_confidence(0) benign(0.287) TCGA-CR-6481-01 19 41828509 41828509 C T CCDC97 Silent p.D307D 0.09 TCGA-CR-6481-01 19 42907160 42907160 C T LIPE Missense_Mutation p.E856K 0.11 deleterious(0.02) possibly_damaging(0.735) TCGA-CR-6481-01 19 43243011 43243013 CTC TT PSG3 Frame_Shift_Del p.R98Qfs*11 0.10 TCGA-CR-6481-01 19 43372195 43372195 G A PSG1 3'UTR 0.28 TCGA-CR-6481-01 19 46215859 46215859 G A FBXO46 Nonsense_Mutation p.R299* 0.19 TCGA-CR-6481-01 19 46973455 46973455 C T PNMAL1 Missense_Mutation p.E280K 0.15 tolerated(0.09) possibly_damaging(0.486) TCGA-CR-6481-01 19 49004553 49004553 C T LMTK3 Missense_Mutation p.E359K 0.16 possibly_damaging(0.689) TCGA-CR-6481-01 19 4929378 4929378 G C MIR4747 5'Flank 0.17 TCGA-CR-6481-01 19 49652886 49652886 C G PPFIA3 Nonsense_Mutation p.S1146* 0.07 TCGA-CR-6481-01 19 50780093 50780093 G A MYH14 Missense_Mutation p.E1254K 0.22 deleterious(0.02) possibly_damaging(0.46) TCGA-CR-6481-01 19 52671401 52671401 C G ZNF836 5'UTR 0.18 TCGA-CR-6481-01 19 53058569 53058569 C T ZNF808 Silent p.F800F 0.11 TCGA-CR-6481-01 19 53454322 53454322 T C ZNF816 Missense_Mutation p.K236E 0.14 deleterious(0.01) benign(0.059) TCGA-CR-6481-01 19 53889460 53889460 G T ZNF525 3'Flank 0.24 TCGA-CR-6481-01 19 55857665 55857665 G A SUV420H2 Missense_Mutation p.E219K 0.11 tolerated(0.1) benign(0.011) TCGA-CR-6481-01 19 57641988 57641988 G A USP29 Missense_Mutation p.D649N 0.10 tolerated(0.22) probably_damaging(0.985) TCGA-CR-6481-01 19 6741022 6741022 A T TRIP10 Missense_Mutation p.D9V 0.13 deleterious(0) possibly_damaging(0.892) TCGA-CR-6481-01 19 9874111 9874111 C T ZNF846 Intron 0.09 TCGA-CR-6481-01 1 10702951 10702951 G A CASZ1 Missense_Mutation p.S1376F 0.10 deleterious_low_confidence(0) possibly_damaging(0.645) TCGA-CR-6481-01 1 10703259 10703259 C T CASZ1 Silent p.R1326R 0.12 TCGA-CR-6481-01 1 10707773 10707773 G C CASZ1 Intron 0.29 TCGA-CR-6481-01 1 10707847 10707847 G A CASZ1 Intron 0.15 TCGA-CR-6481-01 1 109154857 109154857 C T FAM102B Missense_Mutation p.R116C 0.25 tolerated(0.18) probably_damaging(0.95) TCGA-CR-6481-01 1 110466425 110466425 C G CSF1 Silent p.L394L 0.15 TCGA-CR-6481-01 1 11255096 11255096 G C ANGPTL7 3'UTR 0.29 TCGA-CR-6481-01 1 1390860 1390860 C T ATAD3C Silent p.L133L 0.25 TCGA-CR-6481-01 1 145459695 145459695 C T POLR3GL Missense_Mutation p.M71I 0.17 deleterious(0.04) benign(0.371) TCGA-CR-6481-01 1 150634351 150634351 C T GOLPH3L Silent p.L123L 0.15 TCGA-CR-6481-01 1 153516400 153516400 C T S100A4 Splice_Site p.X48_splice 0.20 TCGA-CR-6481-01 1 15392164 15392164 G A KAZN Silent p.K379K 0.08 TCGA-CR-6481-01 1 155011959 155011959 G A DCST1 Missense_Mutation p.E115K 0.05 deleterious(0.01) possibly_damaging(0.869) TCGA-CR-6481-01 1 156213794 156213794 C T PAQR6 Missense_Mutation p.R305K 0.11 deleterious_low_confidence(0) unknown(0) TCGA-CR-6481-01 1 157648586 157648586 C T FCRL3 Missense_Mutation p.A707T 0.18 tolerated(0.29) benign(0.009) TCGA-CR-6481-01 1 157665912 157665912 C G FCRL3 Missense_Mutation p.E350D 0.12 tolerated(0.06) probably_damaging(0.969) TCGA-CR-6481-01 1 161326611 161326611 G A SDHC Nonsense_Mutation p.W129* 0.14 TCGA-CR-6481-01 1 163039306 163039306 C G RGS4 Missense_Mutation p.S108C 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.667) TCGA-CR-6481-01 1 167095830 167095830 G C DUSP27 Missense_Mutation p.E488Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-CR-6481-01 1 167097324 167097324 G A DUSP27 Missense_Mutation p.E986K 0.16 tolerated(0.05) benign(0.025) TCGA-CR-6481-01 1 169390719 169390719 G C CCDC181 Missense_Mutation p.S317C 0.17 tolerated(0.05) possibly_damaging(0.698) TCGA-CR-6481-01 1 17292539 17292539 G A CROCC Missense_Mutation p.E1541K 0.14 possibly_damaging(0.502) TCGA-CR-6481-01 1 179311274 179311274 C T SOAT1 Missense_Mutation p.S269L 0.21 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 1 180163447 180163447 C G QSOX1 Missense_Mutation p.S463C 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CR-6481-01 1 182569610 182569610 C T RGS16 Missense_Mutation p.M142I 0.12 deleterious(0.03) benign(0) TCGA-CR-6481-01 1 183209330 183209330 G C LAMC2 Missense_Mutation p.Q1075H 0.21 tolerated(0.05) probably_damaging(0.957) TCGA-CR-6481-01 1 183775568 183775568 C T RGL1 Silent p.L64L 0.19 TCGA-CR-6481-01 1 183853004 183853004 C T RGL1 Missense_Mutation p.S267L 0.17 deleterious(0.04) benign(0.021) TCGA-CR-6481-01 1 185062311 185062311 C T RNF2 Missense_Mutation p.H123Y 0.12 deleterious(0.03) probably_damaging(0.932) TCGA-CR-6481-01 1 186275736 186275736 G A PRG4 Silent p.Q295Q 0.15 TCGA-CR-6481-01 1 186315362 186315362 G A TPR Nonsense_Mutation p.Q1001* 0.11 TCGA-CR-6481-01 1 197031034 197031034 G C F13B Missense_Mutation p.Q111E 0.16 tolerated(0.11) benign(0.314) TCGA-CR-6481-01 1 200524573 200524573 C G KIF14 Missense_Mutation p.E1455Q 0.18 tolerated(1) benign(0.002) TCGA-CR-6481-01 1 204197211 204197211 C T PLEKHA6 Missense_Mutation p.V1011M 0.18 deleterious(0.01) possibly_damaging(0.602) TCGA-CR-6481-01 1 207112542 207112542 C T PIGR Missense_Mutation p.D104N 0.25 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 1 210856787 210856787 C T KCNH1 Missense_Mutation p.D936N 0.18 deleterious_low_confidence(0.02) benign(0.078) TCGA-CR-6481-01 1 223990037 223990037 C T TP53BP2 Missense_Mutation p.D336N 0.12 tolerated(0.37) possibly_damaging(0.791) TCGA-CR-6481-01 1 223990386 223990386 C T TP53BP2 Intron 0.13 TCGA-CR-6481-01 1 223990487 223990487 C G TP53BP2 Silent p.L314L 0.18 TCGA-CR-6481-01 1 230907820 230907820 G C CAPN9 Missense_Mutation p.E284Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-CR-6481-01 1 232942141 232942141 C T MAP10 Missense_Mutation p.P458S 0.14 tolerated(0.08) possibly_damaging(0.763) TCGA-CR-6481-01 1 235915332 235915332 G A LYST Nonsense_Mutation p.Q2534* 0.22 TCGA-CR-6481-01 1 235922480 235922480 G A LYST Missense_Mutation p.R2225C 0.18 deleterious_low_confidence(0.05) benign(0.005) TCGA-CR-6481-01 1 247322349 247322349 C G ZNF124 Missense_Mutation p.Q59H 0.22 tolerated(1) benign(0.005) TCGA-CR-6481-01 1 248402793 248402793 C G OR2M4 Missense_Mutation p.S188C 0.04 deleterious(0) probably_damaging(0.988) TCGA-CR-6481-01 1 25254140 25254140 G A RUNX3 Missense_Mutation p.R136C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 1 31350069 31350069 G A SDC3 Intron 0.22 TCGA-CR-6481-01 1 32210323 32210323 G A BAI2 Missense_Mutation p.P283L 0.14 tolerated(0.89) benign(0.001) TCGA-CR-6481-01 1 35578687 35578687 C T ZMYM1 Missense_Mutation p.S419F 0.17 tolerated_low_confidence(0.05) benign(0.316) TCGA-CR-6481-01 1 39750825 39750825 G A MACF1 Missense_Mutation p.G406E 0.17 probably_damaging(0.95) TCGA-CR-6481-01 1 39876389 39876389 C T KIAA0754 Missense_Mutation p.S15F 0.05 possibly_damaging(0.683) TCGA-CR-6481-01 1 41481844 41481844 C T SLFNL1 Silent p.E386E 0.13 TCGA-CR-6481-01 1 41481853 41481853 C T SLFNL1 Silent p.L383L 0.14 TCGA-CR-6481-01 1 45221866 45221866 G C KIF2C Missense_Mutation p.D312H 0.15 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 1 45268512 45268512 C T PLK3 Missense_Mutation p.S245L 0.16 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 1 47398445 47398445 G C CYP4A11 Nonsense_Mutation p.S451* 0.17 TCGA-CR-6481-01 1 47840885 47840885 C T CMPK1 Nonsense_Mutation p.Q189* 0.15 TCGA-CR-6481-01 1 50574860 50574860 G A ELAVL4 Intron 0.16 TCGA-CR-6481-01 1 53108622 53108622 C T FAM159A Silent p.I90I 0.14 TCGA-CR-6481-01 1 75038328 75038328 G T C1orf173 Silent p.A1022A 0.15 TCGA-CR-6481-01 1 76397847 76397847 C A ASB17 Nonsense_Mutation p.E44* 0.20 TCGA-CR-6481-01 1 84650847 84650847 G A PRKACB Missense_Mutation p.R181K 0.12 deleterious(0.02) possibly_damaging(0.48) TCGA-CR-6481-01 1 84948646 84948646 G A RPF1 Missense_Mutation p.D112N 0.14 deleterious(0.02) probably_damaging(0.979) TCGA-CR-6481-01 1 86313410 86313410 C G COL24A1 Missense_Mutation p.G1134R 0.11 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 1 86964330 86964330 G C CLCA1 Missense_Mutation p.R730T 0.11 deleterious(0.01) benign(0.126) TCGA-CR-6481-01 1 89885758 89885758 C A GBP1P1 RNA 0.09 TCGA-CR-6481-01 1 89885842 89885842 C T GBP1P1 RNA 0.13 TCGA-CR-6481-01 1 9427562 9427562 G C SPSB1 Silent p.G250G 0.21 TCGA-CR-6481-01 1 9427566 9427566 G A SPSB1 Missense_Mutation p.E252K 0.22 tolerated(0.67) benign(0.009) TCGA-CR-6481-01 1 94502326 94502326 C T ABCA4 Missense_Mutation p.E1278K 0.20 deleterious(0.03) benign(0.066) TCGA-CR-6481-01 1 94577116 94577116 C G ABCA4 Silent p.A60A 0.15 TCGA-CR-6481-01 20 36992685 36992685 C T LBP Missense_Mutation p.R237W 0.19 deleterious(0.01) possibly_damaging(0.772) TCGA-CR-6481-01 20 42089355 42089355 G C SRSF6 Silent p.R229R 0.13 TCGA-CR-6481-01 20 47649614 47649614 G C ARFGEF2 Missense_Mutation p.D1746H 0.13 deleterious(0) possibly_damaging(0.897) TCGA-CR-6481-01 20 52199332 52199332 G A ZNF217 Nonsense_Mutation p.Q12* 0.13 TCGA-CR-6481-01 20 53208154 53208154 G C DOK5 Splice_Site p.X137_splice 0.06 TCGA-CR-6481-01 20 56139406 56139406 C T PCK1 Silent p.V381V 0.10 TCGA-CR-6481-01 20 61525058 61525058 C T DIDO1 Missense_Mutation p.D1021N 0.16 possibly_damaging(0.678) TCGA-CR-6481-01 20 61525160 61525160 C T DIDO1 Missense_Mutation p.D987N 0.15 possibly_damaging(0.584) TCGA-CR-6481-01 21 34994360 34994360 C T CRYZL1 Missense_Mutation p.M53I 0.19 tolerated(0.53) benign(0.004) TCGA-CR-6481-01 21 35166702 35166702 G A ITSN1 Missense_Mutation p.E628K 0.14 tolerated(0.69) benign(0.013) TCGA-CR-6481-01 21 45219458 45219458 C T RRP1 Silent p.I273I 0.11 TCGA-CR-6481-01 22 17630458 17630458 C T CECR5 Missense_Mutation p.E102K 0.13 tolerated(0.05) benign(0.159) TCGA-CR-6481-01 22 19868160 19868160 C A TXNRD2 Silent p.L389L 0.08 TCGA-CR-6481-01 22 21363659 21363659 G C AC002472.1 5'Flank 0.14 TCGA-CR-6481-01 22 30079103 30079103 G A NF2 Intron 0.08 TCGA-CR-6481-01 22 32586749 32586749 G C RFPL2 3'UTR 0.08 TCGA-CR-6481-01 22 38028118 38028118 G A GGA1 Silent p.L548L 0.12 TCGA-CR-6481-01 22 38757526 38757526 G A RP3-449O17.1 RNA 0.21 TCGA-CR-6481-01 22 41240869 41240869 G A ST13 Nonsense_Mutation p.Q97* 0.21 TCGA-CR-6481-01 22 41832313 41832313 G A TOB2 3'UTR 0.08 TCGA-CR-6481-01 22 42423140 42423140 C T WBP2NL Silent p.N295N 0.19 TCGA-CR-6481-01 22 45571788 45571788 G T NUP50 Missense_Mutation p.G56V 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-CR-6481-01 22 45728405 45728405 G A FAM118A Missense_Mutation p.V251M 0.14 deleterious(0.04) probably_damaging(1) TCGA-CR-6481-01 2 100203693 100203693 C G AFF3 Missense_Mutation p.E863D 0.18 tolerated(0.11) benign(0.007) TCGA-CR-6481-01 2 101096984 101096984 C T NMS Silent p.F121F 0.14 TCGA-CR-6481-01 2 10136520 10136520 G C GRHL1 Missense_Mutation p.L556F 0.19 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 2 11361348 11361348 C G ROCK2 Missense_Mutation p.G412A 0.16 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 2 11605933 11605933 G A E2F6 Missense_Mutation p.R25W 0.38 deleterious(0) possibly_damaging(0.617) TCGA-CR-6481-01 2 124783248 124783248 G A CNTNAP5 Silent p.L7L 0.10 TCGA-CR-6481-01 2 136740989 136740989 C G DARS Missense_Mutation p.M34I 0.18 tolerated(0.09) benign(0.005) TCGA-CR-6481-01 2 152132175 152132175 C G NMI Missense_Mutation p.E153Q 0.07 tolerated(0.39) benign(0.081) TCGA-CR-6481-01 2 15417101 15417101 C T NBAS Missense_Mutation p.D1755N 0.11 deleterious(0.02) possibly_damaging(0.788) TCGA-CR-6481-01 2 159530188 159530188 G A PKP4 Splice_Site p.X975_splice 0.16 TCGA-CR-6481-01 2 160092614 160092614 G A WDSUB1 Missense_Mutation p.S454L 0.21 deleterious(0) probably_damaging(0.909) TCGA-CR-6481-01 2 160958212 160958212 C T ITGB6 3'UTR 0.21 TCGA-CR-6481-01 2 166011139 166011139 C T SCN3A Missense_Mutation p.M401I 0.20 deleterious(0.03) possibly_damaging(0.679) TCGA-CR-6481-01 2 167262119 167262119 C A SCN7A Nonsense_Mutation p.E1674* 0.16 TCGA-CR-6481-01 2 169869909 169869909 C G ABCB11 Missense_Mutation p.D88H 0.14 deleterious(0) probably_damaging(0.991) TCGA-CR-6481-01 2 179497295 179497295 C G TTN Missense_Mutation p.E14480Q 0.19 TCGA-CR-6481-01 2 179497313 179497313 C T TTN Missense_Mutation p.E14474K 0.17 TCGA-CR-6481-01 2 179547472 179547472 C T TTN Missense_Mutation p.E11016K 0.13 TCGA-CR-6481-01 2 183960237 183960237 G A DUSP19 Missense_Mutation p.E169K 0.13 tolerated(0.06) benign(0.026) TCGA-CR-6481-01 2 183960345 183960345 G A DUSP19 Missense_Mutation p.E205K 0.16 tolerated_low_confidence(0.22) benign(0.001) TCGA-CR-6481-01 2 185800988 185800988 G C ZNF804A Missense_Mutation p.E289Q 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-CR-6481-01 2 187702178 187702178 C G ZSWIM2 Missense_Mutation p.E200Q 0.10 deleterious(0.04) possibly_damaging(0.611) TCGA-CR-6481-01 2 1914020 1914020 G A MYT1L Silent p.R601R 0.12 TCGA-CR-6481-01 2 201515837 201515837 C T AOX1 Silent p.F996F 0.09 TCGA-CR-6481-01 2 202550741 202550741 C T MPP4 Silent p.Q131Q 0.18 TCGA-CR-6481-01 2 204820605 204820605 C T ICOS Missense_Mutation p.S102F 0.11 deleterious(0) probably_damaging(0.954) TCGA-CR-6481-01 2 212566850 212566850 G C ERBB4 Missense_Mutation p.S444C 0.13 tolerated(0.06) probably_damaging(0.989) TCGA-CR-6481-01 2 218749773 218749773 C G TNS1 Missense_Mutation p.D286H 0.07 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 2 220085575 220085575 C T ATG9A Missense_Mutation p.R803Q 0.18 deleterious_low_confidence(0.04) benign(0.286) TCGA-CR-6481-01 2 227958967 227958967 G C COL4A4 Missense_Mutation p.L415V 0.12 benign(0.213) TCGA-CR-6481-01 2 228109061 228109061 C T COL4A3 Missense_Mutation p.T87M 0.13 possibly_damaging(0.541) TCGA-CR-6481-01 2 233671258 233671258 C G GIGYF2 Missense_Mutation p.S587C 0.17 probably_damaging(0.998) TCGA-CR-6481-01 2 233899032 233899032 G A NEU2 Nonsense_Mutation p.W136* 0.21 TCGA-CR-6481-01 2 235950502 235950502 G A SH3BP4 Silent p.P363P 0.12 TCGA-CR-6481-01 2 27685974 27685974 G T IFT172 Missense_Mutation p.S671Y 0.11 deleterious(0.02) possibly_damaging(0.48) TCGA-CR-6481-01 2 30756062 30756062 C G LCLAT1 Missense_Mutation p.I120M 0.09 deleterious(0) probably_damaging(0.994) TCGA-CR-6481-01 2 32626362 32626362 C G BIRC6 Missense_Mutation p.S389C 0.15 benign(0.078) TCGA-CR-6481-01 2 39411779 39411779 C G CDKL4 Missense_Mutation p.E249Q 0.07 tolerated(0.13) possibly_damaging(0.483) TCGA-CR-6481-01 2 44116941 44116941 G C LRPPRC Missense_Mutation p.L1354V 0.12 deleterious(0.03) benign(0.323) TCGA-CR-6481-01 2 44970813 44970813 G A CAMKMT Missense_Mutation p.D226N 0.20 deleterious(0.05) probably_damaging(1) TCGA-CR-6481-01 2 46986106 46986106 G A SOCS5 Missense_Mutation p.R146Q 0.17 tolerated(0.47) benign(0.198) TCGA-CR-6481-01 2 54876298 54876298 G A SPTBN1 Missense_Mutation p.E1725K 0.13 deleterious(0) probably_damaging(0.981) TCGA-CR-6481-01 2 68389791 68389791 G A PNO1 Missense_Mutation p.D206N 0.15 deleterious(0.04) benign(0.344) TCGA-CR-6481-01 2 75061710 75061710 G A HK2 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0.04) benign(0.009) TCGA-CR-6481-01 2 85818887 85818887 G A VAMP5 Missense_Mutation p.E15K 0.19 tolerated(0.08) probably_damaging(0.971) TCGA-CR-6481-01 2 90139520 90139520 C T IGKV1D-16 Silent p.I97I 0.10 TCGA-CR-6481-01 2 95953210 95953210 G T PROM2 Nonsense_Mutation p.E748* 0.11 TCGA-CR-6481-01 3 123419491 123419491 C T MYLK Missense_Mutation p.E942K 0.14 deleterious(0.04) benign(0.044) TCGA-CR-6481-01 3 129389903 129389903 C T TMCC1 Missense_Mutation p.E261K 0.17 deleterious(0) probably_damaging(0.931) TCGA-CR-6481-01 3 133553479 133553479 G A RAB6B Nonsense_Mutation p.R168* 0.18 TCGA-CR-6481-01 3 1367580 1367580 G T CNTN6 Missense_Mutation p.G343V 0.10 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 3 137843367 137843367 G A A4GNT Silent p.F254F 0.21 TCGA-CR-6481-01 3 140277609 140277609 G C CLSTN2 Missense_Mutation p.E651Q 0.14 tolerated(0.07) benign(0.022) TCGA-CR-6481-01 3 141626075 141626075 C T ATP1B3 Missense_Mutation p.S102L 0.12 deleterious(0.03) possibly_damaging(0.605) TCGA-CR-6481-01 3 145789109 145789109 G A PLOD2 Silent p.F650F 0.10 TCGA-CR-6481-01 3 151545802 151545802 G A AADAC Missense_Mutation p.D348N 0.13 deleterious(0) probably_damaging(0.996) TCGA-CR-6481-01 3 154860103 154860103 G C MME Missense_Mutation p.R391T 0.14 deleterious(0) probably_damaging(0.959) TCGA-CR-6481-01 3 155199669 155199669 G C PLCH1 Silent p.L1390L 0.07 TCGA-CR-6481-01 3 168834418 168834418 G C MECOM Missense_Mutation p.F291L 0.10 deleterious(0) probably_damaging(0.998) TCGA-CR-6481-01 3 169644598 169644598 G A SAMD7 Missense_Mutation p.R183Q 0.11 tolerated(0.06) possibly_damaging(0.782) TCGA-CR-6481-01 3 183368194 183368194 G A KLHL24 Missense_Mutation p.R17H 0.10 deleterious_low_confidence(0.01) benign(0.288) TCGA-CR-6481-01 3 183996310 183996310 C A ECE2 Silent p.R379R 0.14 TCGA-CR-6481-01 3 184022098 184022098 C T PSMD2 Silent p.G486G 0.26 TCGA-CR-6481-01 3 184046444 184046444 G A EIF4G1 Missense_Mutation p.E1334K 0.14 deleterious(0) possibly_damaging(0.883) TCGA-CR-6481-01 3 185823423 185823423 C T ETV5 Missense_Mutation p.D42N 0.07 deleterious(0) possibly_damaging(0.902) TCGA-CR-6481-01 3 186450325 186450325 C T KNG1 Silent p.C264C 0.14 TCGA-CR-6481-01 3 193185238 193185238 C T ATP13A4 Silent p.K327K 0.10 TCGA-CR-6481-01 3 195306307 195306307 G A APOD Missense_Mutation p.S9F 0.09 tolerated(0.05) unknown(0) TCGA-CR-6481-01 3 196288262 196288262 C G WDR53 Missense_Mutation p.E29Q 0.14 deleterious(0) probably_damaging(0.965) TCGA-CR-6481-01 3 196288299 196288299 C G WDR53 Silent p.L16L 0.16 TCGA-CR-6481-01 3 196434703 196434703 C T CEP19 Missense_Mutation p.E75K 0.17 tolerated(0.15) benign(0.007) TCGA-CR-6481-01 3 196534686 196534686 G A PAK2 Missense_Mutation p.A204T 0.08 tolerated(0.34) benign(0.004) TCGA-CR-6481-01 3 196626904 196626904 C G SENP5 Missense_Mutation p.L577V 0.17 deleterious(0) probably_damaging(0.996) TCGA-CR-6481-01 3 30045394 30045394 G A RBMS3 3'UTR 0.14 TCGA-CR-6481-01 3 30885930 30885930 G C GADL1 Missense_Mutation p.S227C 0.18 deleterious(0.01) probably_damaging(0.928) TCGA-CR-6481-01 3 33585011 33585011 C T CLASP2 Silent p.L1114L 0.15 TCGA-CR-6481-01 3 38645426 38645426 C T SCN5A Missense_Mutation p.S556N 0.14 tolerated(0.1) probably_damaging(0.995) TCGA-CR-6481-01 3 41973352 41973352 C T ULK4 Missense_Mutation p.M175I 0.10 tolerated(0.41) benign(0.002) TCGA-CR-6481-01 3 48669702 48669702 G A SLC26A6 Silent p.L187L 0.19 TCGA-CR-6481-01 3 49136368 49136368 G C QARS Missense_Mutation p.Q605E 0.18 tolerated(0.4) benign(0.003) TCGA-CR-6481-01 3 49947847 49947847 C T MON1A Missense_Mutation p.E459K 0.12 deleterious(0) probably_damaging(0.994) TCGA-CR-6481-01 3 50608743 50608743 C T HEMK1 Missense_Mutation p.H70Y 0.11 tolerated(0.13) benign(0.272) TCGA-CR-6481-01 3 51992917 51992917 G A PCBP4 Missense_Mutation p.S271L 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-CR-6481-01 3 52087966 52087966 G C DUSP7 Missense_Mutation p.I314M 0.14 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 3 53531326 53531326 C G CACNA1D Missense_Mutation p.S72C 0.05 deleterious_low_confidence(0) benign(0.424) TCGA-CR-6481-01 3 56173588 56173588 G C ERC2 Silent p.L474L 0.19 TCGA-CR-6481-01 3 89259517 89259517 C T EPHA3 Nonsense_Mutation p.Q221* 0.11 TCGA-CR-6481-01 4 108969898 108969898 C A LEF1 3'UTR 0.19 TCGA-CR-6481-01 4 110791623 110791623 G A LRIT3 Missense_Mutation p.R573K 0.20 tolerated(0.81) benign(0.023) TCGA-CR-6481-01 4 123161431 123161431 C T KIAA1109 Missense_Mutation p.R1532C 0.14 probably_damaging(0.998) TCGA-CR-6481-01 4 142053860 142053860 C G RNF150 Missense_Mutation p.E35Q 0.14 deleterious(0.01) possibly_damaging(0.856) TCGA-CR-6481-01 4 149357542 149357542 C T NR3C2 Silent p.V157V 0.11 TCGA-CR-6481-01 4 154553947 154553947 G A KIAA0922 Missense_Mutation p.G1429S 0.16 tolerated(1) benign(0.002) TCGA-CR-6481-01 4 159790180 159790180 G C FNIP2 Missense_Mutation p.D798H 0.08 deleterious(0.02) benign(0.067) TCGA-CR-6481-01 4 169923193 169923193 C G CBR4 Intron 0.22 TCGA-CR-6481-01 4 17583385 17583385 C T LAP3 Missense_Mutation p.S74F 0.15 deleterious(0.03) possibly_damaging(0.778) TCGA-CR-6481-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.17 deleterious(0.01) possibly_damaging(0.594) TCGA-CR-6481-01 4 2746559 2746559 C T TNIP2 Missense_Mutation p.M257I 0.19 deleterious(0.01) benign(0.156) TCGA-CR-6481-01 4 2949385 2949385 G C NOP14 Intron 0.17 TCGA-CR-6481-01 4 47427752 47427752 C T GABRB1 Missense_Mutation p.S381L 0.13 deleterious(0.04) benign(0.035) TCGA-CR-6481-01 4 49034613 49034613 G T CWH43 Silent p.V513V 0.15 TCGA-CR-6481-01 4 57244556 57244556 G A AASDH Silent p.F142F 0.10 TCGA-CR-6481-01 4 69203024 69203024 C T YTHDC1 Missense_Mutation p.E202K 0.12 tolerated_low_confidence(0.19) unknown(0) TCGA-CR-6481-01 4 69683744 69683744 C G UGT2B10 Intron 0.10 TCGA-CR-6481-01 4 76871850 76871850 G C SDAD1 3'UTR 0.13 TCGA-CR-6481-01 4 79328882 79328882 G C FRAS1 Missense_Mutation p.D1399H 0.12 benign(0.127) TCGA-CR-6481-01 4 79461904 79461904 G A FRAS1 Missense_Mutation p.E3889K 0.15 possibly_damaging(0.488) TCGA-CR-6481-01 4 89052248 89052248 G C ABCG2 Missense_Mutation p.Q166E 0.15 tolerated(1) benign(0.004) TCGA-CR-6481-01 5 127653955 127653955 C G FBN2 Missense_Mutation p.E1535Q 0.16 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 5 130857157 130857157 G A RAPGEF6 Missense_Mutation p.H185Y 0.11 tolerated(0.05) possibly_damaging(0.61) TCGA-CR-6481-01 5 131679482 131679482 C T SLC22A4 Missense_Mutation p.S537L 0.17 tolerated(0.44) benign(0.001) TCGA-CR-6481-01 5 137071467 137071467 G T KLHL3 5'UTR 0.29 TCGA-CR-6481-01 5 137271509 137271509 G A PKD2L2 Missense_Mutation p.M565I 0.12 tolerated(0.42) benign(0.009) TCGA-CR-6481-01 5 137847221 137847221 C G ETF1 Missense_Mutation p.E269Q 0.15 tolerated(0.06) possibly_damaging(0.609) TCGA-CR-6481-01 5 139745140 139745140 G C SLC4A9 Missense_Mutation p.D587H 0.24 deleterious(0.02) benign(0.022) TCGA-CR-6481-01 5 140167978 140167978 C T PCDHA1 Silent p.I701I 0.19 TCGA-CR-6481-01 5 140208515 140208515 C G PCDHA6 Missense_Mutation p.S280C 0.17 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CR-6481-01 5 140754586 140754586 G C PCDHGA6 Silent p.S312S 0.16 TCGA-CR-6481-01 5 150897219 150897219 G A FAT2 Missense_Mutation p.L3809F 0.15 possibly_damaging(0.701) TCGA-CR-6481-01 5 154393878 154393878 C A KIF4B Nonsense_Mutation p.C153* 0.12 TCGA-CR-6481-01 5 172560701 172560701 C T CREBRF Missense_Mutation p.P625S 0.18 deleterious(0.02) benign(0.254) TCGA-CR-6481-01 5 176673765 176673765 G A NSD1 Missense_Mutation p.D1489N 0.18 deleterious(0.03) benign(0.091) TCGA-CR-6481-01 5 179302008 179302008 C T TBC1D9B Missense_Mutation p.E694K 0.16 deleterious(0) probably_damaging(0.986) TCGA-CR-6481-01 5 24537725 24537725 C A CDH10 Missense_Mutation p.G97V 0.13 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 5 33938124 33938124 G A RXFP3 Missense_Mutation p.E427K 0.18 tolerated(0.07) benign(0.042) TCGA-CR-6481-01 5 36122457 36122457 G A LMBRD2 Missense_Mutation p.H349Y 0.19 deleterious(0) benign(0.01) TCGA-CR-6481-01 5 37815932 37815932 C G GDNF Missense_Mutation p.E170Q 0.10 tolerated(0.09) possibly_damaging(0.83) TCGA-CR-6481-01 5 38883988 38883988 G A OSMR Missense_Mutation p.E160K 0.08 deleterious(0) probably_damaging(0.977) TCGA-CR-6481-01 5 50091252 50091252 G A PARP8 Splice_Site p.X476_splice 0.15 TCGA-CR-6481-01 5 66458527 66458527 C T MAST4 Missense_Mutation p.S1293L 0.11 probably_damaging(1) TCGA-CR-6481-01 5 66460113 66460113 C T MAST4 Silent p.L1702L 0.21 TCGA-CR-6481-01 5 68669684 68669684 G C RAD17 Missense_Mutation p.D24H 0.15 deleterious(0.01) possibly_damaging(0.491) TCGA-CR-6481-01 5 68669849 68669849 G C RAD17 Missense_Mutation p.E79Q 0.09 tolerated(0.22) benign(0.078) TCGA-CR-6481-01 5 68849620 68849620 G C OCLN 3'UTR 0.19 TCGA-CR-6481-01 5 90041440 90041440 G C GPR98 Missense_Mutation p.R3601T 0.17 benign(0.001) TCGA-CR-6481-01 5 94849302 94849302 G C TTC37 Missense_Mutation p.F917L 0.09 deleterious(0.02) possibly_damaging(0.488) TCGA-CR-6481-01 6 106999740 106999740 G A AIM1 Missense_Mutation p.E1368K 0.13 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 6 116879267 116879267 C G FAM26D Missense_Mutation p.L137V 0.11 tolerated(0.21) benign(0.416) TCGA-CR-6481-01 6 116988128 116988128 C T ZUFSP Silent p.K76K 0.15 TCGA-CR-6481-01 6 125144398 125144398 G A NKAIN2 3'UTR 0.10 TCGA-CR-6481-01 6 133783787 133783787 G A EYA4 Silent p.K203K 0.12 TCGA-CR-6481-01 6 137527279 137527279 G A IFNGR1 Nonsense_Mutation p.R123* 0.15 TCGA-CR-6481-01 6 138202334 138202334 G A TNFAIP3 Missense_Mutation p.E751K 0.08 tolerated(0.73) benign(0.075) TCGA-CR-6481-01 6 170591809 170591809 G T DLL1 3'UTR 0.19 TCGA-CR-6481-01 6 26124697 26124697 C T HIST1H2AC Silent p.I79I 0.16 TCGA-CR-6481-01 6 26413881 26413881 G C BTN3A1 Missense_Mutation p.L501F 0.14 tolerated(0.18) benign(0.096) TCGA-CR-6481-01 6 26463541 26463541 C T BTN2A1 Missense_Mutation p.S167F 0.12 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 6 27839889 27839889 G A HIST1H3I Nonsense_Mutation p.Q69* 0.24 TCGA-CR-6481-01 6 30856694 30856694 G A DDR1 Missense_Mutation p.R32H 0.08 deleterious(0) probably_damaging(0.995) TCGA-CR-6481-01 6 31084503 31084503 C T CDSN Missense_Mutation p.E297K 0.09 deleterious_low_confidence(0) unknown(0) TCGA-CR-6481-01 6 31324665 31324665 G T HLA-B Nonsense_Mutation p.S48* 0.23 TCGA-CR-6481-01 6 31627496 31627496 C T C6orf47 Missense_Mutation p.E77K 0.08 tolerated_low_confidence(0.91) benign(0.234) TCGA-CR-6481-01 6 31856391 31856391 C G EHMT2 Missense_Mutation p.E450D 0.11 tolerated(0.24) benign(0.123) TCGA-CR-6481-01 6 32050002 32050002 C T RNA5SP206 5'Flank 0.09 TCGA-CR-6481-01 6 33660549 33660549 C T ITPR3 Silent p.F2501F 0.16 TCGA-CR-6481-01 6 34839420 34839420 G A UHRF1BP1 Missense_Mutation p.M1347I 0.15 tolerated(1) benign(0.003) TCGA-CR-6481-01 6 36938202 36938202 G A MTCH1 Silent p.L317L 0.17 TCGA-CR-6481-01 6 43098331 43098331 C T PTK7 Silent p.F256F 0.08 TCGA-CR-6481-01 6 49415427 49415427 C T MUT Missense_Mutation p.D506N 0.15 deleterious_low_confidence(0.01) benign(0.323) TCGA-CR-6481-01 6 66204659 66204659 A G EYS Silent p.D215D 0.12 TCGA-CR-6481-01 6 7559514 7559514 C G DSP Missense_Mutation p.R160G 0.13 probably_damaging(0.992) TCGA-CR-6481-01 6 7566622 7566622 C T DSP Nonsense_Mutation p.Q318* 0.13 TCGA-CR-6481-01 6 7570715 7570715 C T DSP Silent p.L540L 0.17 TCGA-CR-6481-01 6 88144769 88144769 C T C6ORF165 Nonsense_Mutation p.Q498* 0.09 TCGA-CR-6481-01 6 90472197 90472197 C G MDN1 Missense_Mutation p.E733Q 0.05 probably_damaging(0.984) TCGA-CR-6481-01 6 99347183 99347183 G A FBXL4 Silent p.C426C 0.17 TCGA-CR-6481-01 7 100344231 100344231 G A ZAN Silent p.V279V 0.08 TCGA-CR-6481-01 7 100816658 100816658 C A NAT16 Silent p.P152P 0.23 TCGA-CR-6481-01 7 101844841 101844841 C G CUX1 Missense_Mutation p.S766C 0.16 deleterious(0.01) unknown(0) TCGA-CR-6481-01 7 107822288 107822288 C T NRCAM Missense_Mutation p.R875Q 0.25 tolerated(0.61) benign(0.042) TCGA-CR-6481-01 7 133041328 133041328 G A EXOC4 Splice_Site p.X336_splice 0.09 TCGA-CR-6481-01 7 141422958 141422958 C T WEE2 Missense_Mutation p.S302F 0.17 deleterious(0.05) possibly_damaging(0.877) TCGA-CR-6481-01 7 141765603 141765603 C G MGAM Intron 0.28 TCGA-CR-6481-01 7 150774893 150774893 C G FASTK Intron 0.17 TCGA-CR-6481-01 7 150936782 150936782 G C SMARCD3 Missense_Mutation p.F408L 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 7 151818888 151818888 C T GALNT11 3'UTR 0.25 TCGA-CR-6481-01 7 18066763 18066763 C T PRPS1L1 Missense_Mutation p.V215M 0.17 tolerated(0.08) benign(0.297) TCGA-CR-6481-01 7 21781778 21781778 C T DNAH11 Silent p.V2723V 0.22 TCGA-CR-6481-01 7 37989863 37989863 C A EPDR1 Silent p.T180T 0.10 TCGA-CR-6481-01 7 38796440 38796440 C G VPS41 Missense_Mutation p.E565Q 0.13 deleterious(0.03) possibly_damaging(0.883) TCGA-CR-6481-01 7 56007242 56007242 G A ZNF713 Missense_Mutation p.G279E 0.13 tolerated(0.05) benign(0.172) TCGA-CR-6481-01 7 77256781 77256781 C T PTPN12 Silent p.L595L 0.11 TCGA-CR-6481-01 7 89856767 89856767 G C STEAP2 Missense_Mutation p.M325I 0.20 tolerated(1) benign(0.017) TCGA-CR-6481-01 7 92838091 92838091 C T HEPACAM2 Missense_Mutation p.A272T 0.14 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 7 99159525 99159525 C T ZNF655 Intron 0.44 TCGA-CR-6481-01 8 100523503 100523503 G T VPS13B Nonsense_Mutation p.E1491* 0.14 TCGA-CR-6481-01 8 102731491 102731491 C G NCALD Missense_Mutation p.E123Q 0.14 tolerated(0.18) benign(0.253) TCGA-CR-6481-01 8 10470341 10470341 G A RP1L1 Missense_Mutation p.R423W 0.25 benign(0.028) TCGA-CR-6481-01 8 107782097 107782097 C G ABRA Missense_Mutation p.E108Q 0.04 tolerated(0.27) probably_damaging(0.926) TCGA-CR-6481-01 8 110293297 110293297 G A NUDCD1 Missense_Mutation p.H310Y 0.18 tolerated(0.61) benign(0.01) TCGA-CR-6481-01 8 110497290 110497290 G C PKHD1L1 Silent p.V3198V 0.16 TCGA-CR-6481-01 8 11188593 11188593 G T SLC35G5 5'UTR 0.15 TCGA-CR-6481-01 8 11188898 11188898 C T SLC35G5 Silent p.L95L 0.12 TCGA-CR-6481-01 8 117874120 117874120 C A RAD21 Nonsense_Mutation p.E112* 0.16 TCGA-CR-6481-01 8 118183390 118183390 C T SLC30A8 Missense_Mutation p.S316L 0.15 deleterious(0) probably_damaging(0.986) TCGA-CR-6481-01 8 120118062 120118062 G A COLEC10 Missense_Mutation p.E156K 0.13 deleterious(0.01) benign(0.092) TCGA-CR-6481-01 8 123965799 123965799 G A ZHX2 Silent p.L683L 0.09 TCGA-CR-6481-01 8 123965807 123965807 G C ZHX2 Missense_Mutation p.G686A 0.08 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 8 124413317 124413317 G A ATAD2 5'Flank 0.15 TCGA-CR-6481-01 8 144941998 144941998 G A EPPK1 Silent p.D1808D 0.18 TCGA-CR-6481-01 8 145096263 145096263 G C SPATC1 Missense_Mutation p.K479N 0.18 deleterious(0) probably_damaging(0.998) TCGA-CR-6481-01 8 17613142 17613142 C G MTUS1 Missense_Mutation p.E59Q 0.14 deleterious(0.01) possibly_damaging(0.628) TCGA-CR-6481-01 8 21767244 21767244 G A DOK2 Missense_Mutation p.R273W 0.08 deleterious(0.01) probably_damaging(0.939) TCGA-CR-6481-01 8 23167319 23167319 G A LOXL2 Missense_Mutation p.S581L 0.16 deleterious(0) possibly_damaging(0.57) TCGA-CR-6481-01 8 23174627 23174627 C G LOXL2 Missense_Mutation p.E491Q 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-CR-6481-01 8 38840029 38840029 C T HTRA4 Missense_Mutation p.S376L 0.09 tolerated(0.42) benign(0.006) TCGA-CR-6481-01 8 41161008 41161008 G C SFRP1 Missense_Mutation p.I198M 0.23 tolerated(0.32) benign(0.023) TCGA-CR-6481-01 8 68131668 68131668 C T ARFGEF1 Missense_Mutation p.E1446K 0.07 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 8 69058533 69058533 C G PREX2 Missense_Mutation p.Q1393E 0.12 tolerated(0.1) benign(0.057) TCGA-CR-6481-01 8 73850115 73850115 G A KCNB2 Missense_Mutation p.R842K 0.12 tolerated_low_confidence(0.98) benign(0.028) TCGA-CR-6481-01 8 81577163 81577163 C G ZNF704 Missense_Mutation p.D272H 0.15 tolerated(0.08) possibly_damaging(0.767) TCGA-CR-6481-01 8 93029653 93029653 G A RUNX1T1 Intron 0.10 TCGA-CR-6481-01 9 100616544 100616544 C G FOXE1 Silent p.R116R 0.11 TCGA-CR-6481-01 9 100872212 100872212 C T TRIM14 Missense_Mutation p.D88N 0.10 deleterious(0.03) benign(0.159) TCGA-CR-6481-01 9 102784444 102784444 C T ERP44 Missense_Mutation p.M117I 0.09 tolerated(0.2) benign(0.004) TCGA-CR-6481-01 9 117120255 117120255 G C AKNA Missense_Mutation p.I895M 0.13 deleterious(0.03) benign(0.284) TCGA-CR-6481-01 9 125438029 125438029 G A OR1L3 Silent p.V207V 0.18 TCGA-CR-6481-01 9 125865491 125865491 G A RABGAP1 Silent p.%3D 0.15 TCGA-CR-6481-01 9 127999008 127999008 C T HSPA5 Missense_Mutation p.D610N 0.11 tolerated_low_confidence(0.38) benign(0.012) TCGA-CR-6481-01 9 128001040 128001040 C T HSPA5 Missense_Mutation p.D355N 0.20 deleterious_low_confidence(0) benign(0.242) TCGA-CR-6481-01 9 128001050 128001050 C T HSPA5 Silent p.L351L 0.23 TCGA-CR-6481-01 9 131388879 131388879 G C SPTAN1 Missense_Mutation p.K2163N 0.22 deleterious(0.03) probably_damaging(0.972) TCGA-CR-6481-01 9 132984969 132984969 C G NCS1 Missense_Mutation p.I116M 0.13 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 9 134473643 134473643 G A RAPGEF1 Silent p.D684D 0.26 TCGA-CR-6481-01 9 135073644 135073644 G A NTNG2 Missense_Mutation p.E169K 0.24 tolerated(0.2) benign(0.402) TCGA-CR-6481-01 9 136323096 136323096 G A ADAMTS13 Silent p.T1319T 0.06 TCGA-CR-6481-01 9 136629201 136629201 C T VAV2 Missense_Mutation p.E874K 0.10 deleterious(0) probably_damaging(0.999) TCGA-CR-6481-01 9 139391123 139391123 G A NOTCH1 Silent p.A2356A 0.13 TCGA-CR-6481-01 9 139418216 139418216 A T NOTCH1 Missense_Mutation p.L119Q 0.14 tolerated(0.07) probably_damaging(0.982) TCGA-CR-6481-01 9 139635723 139635723 C T LCN10 Silent p.P116P 0.11 TCGA-CR-6481-01 9 140139845 140139845 C T FAM166A Missense_Mutation p.D146N 0.10 tolerated(0.39) benign(0.002) TCGA-CR-6481-01 9 140150496 140150496 C G NELFB Missense_Mutation p.I80M 0.13 deleterious(0.04) possibly_damaging(0.71) TCGA-CR-6481-01 9 141070129 141070129 C G TUBBP5 RNA 0.10 TCGA-CR-6481-01 9 21854777 21854777 C T MTAP Missense_Mutation p.P200S 0.13 deleterious(0.05) probably_damaging(0.917) TCGA-CR-6481-01 9 35739738 35739738 C G GBA2 Missense_Mutation p.G490A 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-CR-6481-01 9 35741858 35741858 C G GBA2 Missense_Mutation p.Q199H 0.07 deleterious(0.04) benign(0.033) TCGA-CR-6481-01 9 35806507 35806507 G A NPR2 Missense_Mutation p.E831K 0.17 deleterious(0) probably_damaging(0.992) TCGA-CR-6481-01 9 36211652 36211652 G A CLTA Missense_Mutation p.E210K 0.10 deleterious(0) probably_damaging(0.992) TCGA-CR-6481-01 9 6506134 6506134 G A UHRF2 Silent p.Q788Q 0.05 TCGA-CR-6481-01 9 77354768 77354768 G A TRPM6 Silent p.V1786V 0.15 TCGA-CR-6481-01 9 88193845 88193845 C T AGTPBP1 Missense_Mutation p.G1071E 0.12 deleterious(0) probably_damaging(1) TCGA-CR-6481-01 9 97844977 97844977 G T C9orf3 Missense_Mutation p.V814L 0.19 deleterious(0) probably_damaging(0.986) TCGA-CR-6481-01 9 97845023 97845023 C T C9orf3 Intron 0.13 TCGA-CR-6481-01 9 98242295 98242295 C G PTCH1 Missense_Mutation p.L341F 0.22 deleterious(0) probably_damaging(0.996) TCGA-CR-6481-01 9 99489552 99489552 C T RP11-535M15.2 3'Flank 0.31 TCGA-CR-6481-01 X 100604914 100604914 G A BTK Missense_Mutation p.L647F 0.28 deleterious(0) possibly_damaging(0.848) TCGA-CR-6481-01 X 119005174 119005174 C T RNF113A Missense_Mutation p.E135K 0.06 deleterious(0.05) benign(0.259) TCGA-CR-6481-01 X 119005250 119005250 C T RNF113A Silent p.V109V 0.07 TCGA-CR-6481-01 X 119005303 119005303 C T RNF113A Missense_Mutation p.E92K 0.07 tolerated(0.33) benign(0.002) TCGA-CR-6481-01 X 119005408 119005408 C T RNF113A Missense_Mutation p.E57K 0.04 tolerated(0.22) benign(0.022) TCGA-CR-6481-01 X 122537305 122537305 G A GRIA3 Missense_Mutation p.D410N 0.36 tolerated(0.54) benign(0.005) TCGA-CR-6481-01 X 130410218 130410218 G A IGSF1 Silent p.F876F 0.34 TCGA-CR-6481-01 X 151366158 151366158 G C GABRA3 Nonsense_Mutation p.S293* 0.25 TCGA-CR-6481-01 X 18956826 18956826 G T PHKA2 Silent p.L320L 0.31 TCGA-CR-6481-01 X 2878422 2878422 G A ARSE Missense_Mutation p.S7F 0.34 deleterious(0.03) benign(0.003) TCGA-CR-6481-01 X 41206168 41206168 G C DDX3X Missense_Mutation p.D558H 0.38 deleterious(0.01) benign(0.318) TCGA-CR-6481-01 X 41206210 41206210 G C DDX3X Missense_Mutation p.E572Q 0.39 deleterious(0.02) benign(0.026) TCGA-CR-6481-01 X 70514197 70514197 C T NONO Nonsense_Mutation p.Q157* 0.27 TCGA-CR-6481-01 X 73072061 73072061 G A XIST RNA 0.33 TCGA-CR-6481-01 X 79980560 79980560 C T BRWD3 Missense_Mutation p.D465N 0.33 tolerated(0.14) benign(0.161) TCGA-CR-6481-01 X 79989634 79989634 C T BRWD3 Missense_Mutation p.E357K 0.32 deleterious(0) possibly_damaging(0.827) TCGA-CR-6481-01 X 86890739 86890739 C T KLHL4 Missense_Mutation p.S630F 0.27 deleterious(0) possibly_damaging(0.776) TCGA-CR-6482-01 10 102689617 102689617 T G FAM178A Missense_Mutation p.I732M 0.18 tolerated(0.19) benign(0.354) TCGA-CR-6482-01 10 102747249 102747249 G A MRPL43 5'UTR 0.14 TCGA-CR-6482-01 10 135015084 135015084 C T KNDC1 Silent p.D1023D 0.18 TCGA-CR-6482-01 11 30358279 30358279 G T ARL14EP Missense_Mutation p.K240N 0.14 tolerated(0.19) probably_damaging(0.996) TCGA-CR-6482-01 11 57154973 57154973 C A PRG2 Missense_Mutation p.R215I 0.17 deleterious(0.03) benign(0.229) TCGA-CR-6482-01 12 105151235 105151235 A G CHST11 Missense_Mutation p.E238G 0.27 tolerated(0.17) benign(0.038) TCGA-CR-6482-01 12 42866219 42866219 C T PRICKLE1 Missense_Mutation p.A34T 0.19 tolerated(0.07) benign(0.05) TCGA-CR-6482-01 12 56504766 56504766 G C PA2G4 Missense_Mutation p.K287N 0.15 deleterious(0.05) benign(0.007) TCGA-CR-6482-01 12 56505295 56505295 G C PA2G4 Missense_Mutation p.Q367H 0.17 deleterious(0.03) benign(0.276) TCGA-CR-6482-01 13 25670487 25670487 T C PABPC3 Missense_Mutation p.S51P 0.16 deleterious(0.02) probably_damaging(0.914) TCGA-CR-6482-01 14 52473375 52473375 G A NID2 Missense_Mutation p.T1295I 0.12 deleterious(0) probably_damaging(0.999) TCGA-CR-6482-01 15 101589973 101589973 G A LRRK1 Missense_Mutation p.D1142N 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-CR-6482-01 15 22956374 22956374 G A CYFIP1 Intron 0.21 TCGA-CR-6482-01 15 34150099 34150099 G A RYR3 Missense_Mutation p.C4709Y 0.13 benign(0.38) TCGA-CR-6482-01 15 41191580 41191580 C G VPS18 Silent p.L188L 0.16 TCGA-CR-6482-01 15 43816968 43816968 C A MAP1A Silent p.V1099V 0.20 TCGA-CR-6482-01 16 1306807 1306807 G C TPSD1 Missense_Mutation p.K88N 0.11 tolerated(0.5) benign(0.255) TCGA-CR-6482-01 17 18057108 18057108 G A MYO15A Silent p.L2662L 0.10 TCGA-CR-6482-01 17 61391920 61391920 G A TANC2 Missense_Mutation p.G370E 0.19 deleterious(0) probably_damaging(0.988) TCGA-CR-6482-01 17 80045301 80045301 C T FASN Silent p.S1041S 0.17 TCGA-CR-6482-01 18 11893497 11893497 G T MPPE1 Silent p.I120I 0.35 TCGA-CR-6482-01 18 7231177 7231177 G A LRRC30 Missense_Mutation p.G14D 0.14 tolerated_low_confidence(0.77) benign(0.002) TCGA-CR-6482-01 19 15807840 15807840 G A CYP4F12 Missense_Mutation p.R507H 0.17 deleterious(0.01) probably_damaging(0.924) TCGA-CR-6482-01 19 47137457 47137457 G T GNG8 Nonsense_Mutation p.S30* 0.35 TCGA-CR-6482-01 19 48922614 48922614 A G GRIN2D Missense_Mutation p.K620R 0.16 tolerated(0.15) possibly_damaging(0.779) TCGA-CR-6482-01 19 57838010 57838010 T C ZNF543 Missense_Mutation p.L52S 0.17 deleterious(0) possibly_damaging(0.638) TCGA-CR-6482-01 1 110466699 110466699 G A CSF1 Missense_Mutation p.E486K 0.27 tolerated(0.82) benign(0.014) TCGA-CR-6482-01 1 11718436 11718436 C T FBXO44 Silent p.F126F 0.25 TCGA-CR-6482-01 1 152188507 152188507 A T HRNR Silent p.G1866G 0.05 TCGA-CR-6482-01 1 155152367 155152367 C T TRIM46 Silent p.G515G 0.24 TCGA-CR-6482-01 1 33246856 33246857 - A YARS Intron 0.33 TCGA-CR-6482-01 21 19628972 19628972 G C CHODL Missense_Mutation p.E76Q 0.19 deleterious(0) probably_damaging(0.914) TCGA-CR-6482-01 22 24038844 24038844 G A RGL4 Missense_Mutation p.R377K 0.21 tolerated(0.05) benign(0.098) TCGA-CR-6482-01 22 37962716 37962716 C G CDC42EP1 Missense_Mutation p.I120M 0.15 tolerated(0.06) probably_damaging(0.984) TCGA-CR-6482-01 2 33764264 33764264 G T RASGRP3 Missense_Mutation p.R422M 0.21 deleterious(0) benign(0.326) TCGA-CR-6482-01 3 121208235 121208235 A G POLQ Silent p.N1181N 0.03 TCGA-CR-6482-01 3 124103747 124103747 C T KALRN Missense_Mutation p.T607M 0.11 deleterious(0) unknown(0) TCGA-CR-6482-01 3 136664745 136664745 G A NCK1 Missense_Mutation p.V183I 0.18 tolerated(0.23) benign(0.025) TCGA-CR-6482-01 3 69111272 69111272 T A UBA3 Missense_Mutation p.E251V 0.22 deleterious(0) probably_damaging(1) TCGA-CR-6482-01 5 140698816 140698816 C T TAF7 Missense_Mutation p.E266K 0.20 tolerated(0.85) benign(0.002) TCGA-CR-6482-01 5 141325324 141325324 C T PCDH12 Silent p.A1059A 0.24 TCGA-CR-6482-01 6 117128262 117128262 C G GPRC6A Silent p.L202L 0.23 TCGA-CR-6482-01 6 135510957 135510957 G A MYB Missense_Mutation p.R81Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-CR-6482-01 6 55223938 55223938 T C GFRAL Splice_Site p.X318_splice 0.16 TCGA-CR-6482-01 6 56472764 56472764 A T DST Intron 0.27 TCGA-CR-6482-01 7 138601971 138601971 C T KIAA1549 Missense_Mutation p.E801K 0.19 tolerated(0.39) benign(0.003) TCGA-CR-6482-01 7 150036158 150036158 A C RARRES2 Missense_Mutation p.C98G 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-CR-6482-01 8 143695621 143695621 G A ARC Silent p.D4D 0.27 TCGA-CR-6482-01 8 144919254 144919254 G A NRBP2 Missense_Mutation p.A407V 0.28 tolerated(0.91) benign(0.009) TCGA-CR-6482-01 8 144998170 144998170 G A PLEC Missense_Mutation p.A2113V 0.52 unknown(0) TCGA-CR-6482-01 9 130259572 130259572 G A LRSAM1 Missense_Mutation p.R624Q 0.22 tolerated(0.3) benign(0.034) TCGA-CR-6482-01 9 133805083 133805083 G A FIBCD1 Silent p.A141A 0.36 TCGA-CR-6484-01 10 102048203 102048203 C G PKD2L1 Missense_Mutation p.E790Q 0.15 tolerated_low_confidence(0.15) benign(0.403) TCGA-CR-6484-01 10 103360965 103360965 C G DPCD Missense_Mutation p.I92M 0.11 deleterious(0.01) possibly_damaging(0.459) TCGA-CR-6484-01 10 103871248 103871248 G A LDB1 Missense_Mutation p.P24L 0.19 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CR-6484-01 10 116057054 116057054 C G AFAP1L2 Silent p.L744L 0.14 TCGA-CR-6484-01 10 121556365 121556365 G C INPP5F Missense_Mutation p.D270H 0.06 deleterious(0.01) probably_damaging(0.972) TCGA-CR-6484-01 10 127429586 127429586 C G EDRF1 Silent p.L729L 0.22 TCGA-CR-6484-01 10 131557595 131557595 G A MGMT Missense_Mutation p.R166K 0.19 tolerated(0.06) benign(0.109) TCGA-CR-6484-01 10 27048143 27048143 G A ABI1 Missense_Mutation p.S309F 0.21 tolerated_low_confidence(0.21) benign(0.361) TCGA-CR-6484-01 10 5789019 5789019 C A FAM208B Missense_Mutation p.S1212Y 0.09 deleterious(0) possibly_damaging(0.526) TCGA-CR-6484-01 10 5789105 5789105 C T FAM208B Missense_Mutation p.H1241Y 0.11 deleterious(0.01) benign(0.001) TCGA-CR-6484-01 10 70737337 70737337 G A DDX21 Missense_Mutation p.E599K 0.12 tolerated(0.14) benign(0.011) TCGA-CR-6484-01 10 79742546 79742546 G C POLR3A Missense_Mutation p.I1153M 0.13 deleterious(0) probably_damaging(0.969) TCGA-CR-6484-01 10 85981835 85981835 G A LRIT2 Silent p.R498R 0.20 TCGA-CR-6484-01 11 110327657 110327657 C G FDX1 Missense_Mutation p.T109S 0.15 deleterious(0) probably_damaging(0.996) TCGA-CR-6484-01 11 111844775 111844775 C T DIXDC1 Silent p.I115I 0.19 TCGA-CR-6484-01 11 111889689 111889689 G A DIXDC1 Missense_Mutation p.D660N 0.11 deleterious(0) possibly_damaging(0.906) TCGA-CR-6484-01 11 122848536 122848536 C T BSX Missense_Mutation p.E175K 0.22 tolerated(0.1) benign(0.009) TCGA-CR-6484-01 11 128781747 128781747 C G KCNJ5 Silent p.P193P 0.12 TCGA-CR-6484-01 11 1629200 1629200 G C KRTAP5-3 Nonsense_Mutation p.S139* 0.13 TCGA-CR-6484-01 11 1956113 1956113 C G TNNT3 Missense_Mutation p.F215L 0.19 tolerated(0.05) benign(0.287) TCGA-CR-6484-01 11 33363124 33363124 G A HIPK3 Missense_Mutation p.A597T 0.11 tolerated(0.13) benign(0.003) TCGA-CR-6484-01 11 34982054 34982054 A G PDHX Missense_Mutation p.I210M 0.06 tolerated(0.1) probably_damaging(0.938) TCGA-CR-6484-01 11 36300091 36300091 G A COMMD9 Missense_Mutation p.L85F 0.03 deleterious(0.01) probably_damaging(0.979) TCGA-CR-6484-01 11 46687010 46687010 G C ATG13 Missense_Mutation p.E359D 0.12 tolerated_low_confidence(0.45) probably_damaging(0.968) TCGA-CR-6484-01 11 47189775 47189775 C G ARFGAP2 Missense_Mutation p.E323D 0.12 tolerated(1) probably_damaging(0.916) TCGA-CR-6484-01 11 47295502 47295502 G C MADD Missense_Mutation p.D13H 0.16 deleterious(0) probably_damaging(0.999) TCGA-CR-6484-01 11 55927105 55927105 G A OR8K5 Missense_Mutation p.S230F 0.17 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-CR-6484-01 11 56954823 56954823 G A LRRC55 Missense_Mutation p.D299N 0.11 tolerated(0.56) probably_damaging(0.995) TCGA-CR-6484-01 11 58920371 58920371 G A FAM111A Silent p.V410V 0.13 TCGA-CR-6484-01 11 609574 609574 C G PHRF1 Missense_Mutation p.S1372C 0.17 tolerated(0.15) benign(0.166) TCGA-CR-6484-01 11 65810464 65810464 G A GAL3ST3 Silent p.R270R 0.19 TCGA-CR-6484-01 11 67191490 67191490 G C CARNS1 Silent p.L757L 0.20 TCGA-CR-6484-01 11 6816674 6816674 G A OR6A2 Missense_Mutation p.S89F 0.18 deleterious(0.05) benign(0.002) TCGA-CR-6484-01 11 70218613 70218613 G C PPFIA1 Silent p.L1024L 0.12 TCGA-CR-6484-01 11 73074301 73074301 G C ARHGEF17 Missense_Mutation p.E1683Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-CR-6484-01 11 73074384 73074384 G C ARHGEF17 Silent p.G1710G 0.17 TCGA-CR-6484-01 11 799973 799973 G C PIDD Silent p.L772L 0.18 TCGA-CR-6484-01 11 87847020 87847021 - AA RAB38 3'UTR 0.20 TCGA-CR-6484-01 12 12274061 12274061 C G LRP6 Nonstop_Mutation p.*1614Sext*7 0.16 TCGA-CR-6484-01 12 14589102 14589102 C T ATF7IP Missense_Mutation p.R570C 0.26 tolerated_low_confidence(0.08) possibly_damaging(0.835) TCGA-CR-6484-01 12 4919508 4919508 C T KCNA6 Nonsense_Mutation p.Q101* 0.20 TCGA-CR-6484-01 12 49373291 49373291 G A WNT1 Missense_Mutation p.D49N 0.16 tolerated(0.57) benign(0.001) TCGA-CR-6484-01 12 49436420 49436420 G T KMT2D Missense_Mutation p.P1931T 0.34 benign(0.297) TCGA-CR-6484-01 12 49462888 49462888 C T RHEBL1 Silent p.G18G 0.25 TCGA-CR-6484-01 12 49943272 49943272 G A KCNH3 Missense_Mutation p.R506H 0.17 deleterious(0.01) possibly_damaging(0.651) TCGA-CR-6484-01 12 51138607 51138607 G A DIP2B Silent p.V1572V 0.25 TCGA-CR-6484-01 12 52448880 52448880 G C NR4A1 Silent p.R269R 0.10 TCGA-CR-6484-01 12 53709522 53709522 G C AAAS Nonsense_Mutation p.S99* 0.32 TCGA-CR-6484-01 12 53876597 53876597 C T MAP3K12 Missense_Mutation p.D664N 0.27 tolerated_low_confidence(0.3) benign(0.008) TCGA-CR-6484-01 12 56547847 56547847 G A MYL6B Missense_Mutation p.E49K 0.08 deleterious_low_confidence(0.02) benign(0.074) TCGA-CR-6484-01 12 56548600 56548600 G A MYL6B Missense_Mutation p.E60K 0.13 tolerated(0.09) benign(0.005) TCGA-CR-6484-01 12 56548975 56548975 G A MYL6B Silent p.K113K 0.16 TCGA-CR-6484-01 12 56554275 56554275 G A MYL6 Intron 0.20 TCGA-CR-6484-01 12 6980429 6980429 C T SPSB2 Missense_Mutation p.G240E 0.21 deleterious(0.01) possibly_damaging(0.839) TCGA-CR-6484-01 12 83455572 83455572 G C TMTC2 Missense_Mutation p.E765Q 0.14 deleterious(0) probably_damaging(1) TCGA-CR-6484-01 12 99093306 99093306 G A APAF1 Missense_Mutation p.D809N 0.15 tolerated(0.24) possibly_damaging(0.539) TCGA-CR-6484-01 13 22113514 22113514 G A MICU2 Silent p.D131D 0.41 TCGA-CR-6484-01 13 23913992 23913992 G C SACS Silent p.L1341L 0.23 TCGA-CR-6484-01 13 24471143 24471143 G A C1QTNF9B 5'UTR 0.27 TCGA-CR-6484-01 13 28913326 28913326 C A FLT1 Missense_Mutation p.A823S 0.06 tolerated(0.07) possibly_damaging(0.856) TCGA-CR-6484-01 13 42352181 42352181 C T VWA8 Silent p.V763V 0.10 TCGA-CR-6484-01 13 47303005 47303005 C T LRCH1 Silent p.V631V 0.14 TCGA-CR-6484-01 13 93518707 93518707 C T GPC5 3'UTR 0.06 TCGA-CR-6484-01 13 93518708 93518708 C T GPC5 3'UTR 0.06 TCGA-CR-6484-01 14 100363569 100363569 G A EML1 Silent p.V274V 0.13 TCGA-CR-6484-01 14 23564610 23564610 C T C14orf119 5'UTR 0.12 TCGA-CR-6484-01 14 31637671 31637671 C G HECTD1 Missense_Mutation p.W485C 0.11 deleterious(0) possibly_damaging(0.894) TCGA-CR-6484-01 14 39650613 39650613 G C PNN Missense_Mutation p.R567T 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-CR-6484-01 14 51102087 51102087 C T SAV1 Silent p.L322L 0.27 TCGA-CR-6484-01 14 60749451 60749451 G A PPM1A Missense_Mutation p.M83I 0.08 deleterious(0.04) benign(0.006) TCGA-CR-6484-01 14 61952289 61952289 C T PRKCH Missense_Mutation p.R450C 0.12 deleterious(0) probably_damaging(0.93) TCGA-CR-6484-01 14 65194385 65194385 C A PLEKHG3 Missense_Mutation p.S12R 0.20 deleterious(0) possibly_damaging(0.877) TCGA-CR-6484-01 14 75200790 75200790 C T FCF1 Silent p.Y155Y 0.17 TCGA-CR-6484-01 14 94511037 94511037 C G OTUB2 Missense_Mutation p.L137V 0.08 deleterious(0) probably_damaging(0.998) TCGA-CR-6484-01 15 100332372 100332372 G T AC090825.1 5'Flank 0.19 TCGA-CR-6484-01 15 33955886 33955886 C T RYR3 Missense_Mutation p.A1856V 0.15 probably_damaging(0.963) TCGA-CR-6484-01 15 40565875 40565875 G T PAK6 Nonsense_Mutation p.E581* 0.11 TCGA-CR-6484-01 15 41624610 41624610 G C OIP5 Silent p.L50L 0.19 TCGA-CR-6484-01 15 41804373 41804373 G C LTK Silent p.L150L 0.11 TCGA-CR-6484-01 15 55838571 55838571 G A PYGO1 Nonsense_Mutation p.Q304* 0.13 TCGA-CR-6484-01 15 62993361 62993361 T C TLN2 Silent p.S548S 0.08 TCGA-CR-6484-01 15 65350896 65350896 G A RASL12 Silent p.Y98Y 0.17 TCGA-CR-6484-01 15 72637931 72637931 T C HEXA Intron 0.27 TCGA-CR-6484-01 15 72642814 72642814 G A HEXA Intron 0.10 TCGA-CR-6484-01 15 74368322 74368322 G C GOLGA6A Missense_Mutation p.S190W 0.07 deleterious(0) possibly_damaging(0.716) TCGA-CR-6484-01 15 74628216 74628216 C G CCDC33 Intron 0.09 TCGA-CR-6484-01 15 74967310 74967310 G A EDC3 Silent p.V52V 0.14 TCGA-CR-6484-01 15 82336881 82336881 G C MEX3B Silent p.V110V 0.19 TCGA-CR-6484-01 15 83226644 83226644 C G CPEB1 Missense_Mutation p.D158H 0.09 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-CR-6484-01 15 89738457 89738457 G C ABHD2 Splice_Site p.X361_splice 0.19 TCGA-CR-6484-01 15 89744465 89744465 G C ABHD2 3'UTR 0.12 TCGA-CR-6484-01 15 90210983 90210983 C T PLIN1 Silent p.A271A 0.33 TCGA-CR-6484-01 16 1621494 1621494 C T IFT140 Silent p.G522G 0.10 TCGA-CR-6484-01 16 19126188 19126188 C A ITPRIPL2 Silent p.R135R 0.33 TCGA-CR-6484-01 16 2017315 2017315 A G RNF151 Missense_Mutation p.D15G 0.13 deleterious(0.04) benign(0.077) TCGA-CR-6484-01 16 21261527 21261527 G C ANKS4B Missense_Mutation p.D214H 0.10 deleterious(0.01) possibly_damaging(0.717) TCGA-CR-6484-01 16 21261721 21261721 G T ANKS4B Missense_Mutation p.R278S 0.09 deleterious(0.04) benign(0.01) TCGA-CR-6484-01 16 21261982 21261982 G T ANKS4B Missense_Mutation p.K365N 0.11 tolerated(0.37) benign(0.003) TCGA-CR-6484-01 16 21261991 21261991 G T ANKS4B Missense_Mutation p.Q368H 0.12 deleterious(0.05) possibly_damaging(0.857) TCGA-CR-6484-01 16 21624068 21624068 G A METTL9 Missense_Mutation p.E90K 0.07 tolerated(0.07) possibly_damaging(0.808) TCGA-CR-6484-01 16 30904177 30904177 G A BCL7C Silent p.I88I 0.14 TCGA-CR-6484-01 16 31095655 31095655 C T PRSS53 Missense_Mutation p.G476D 0.09 deleterious(0.04) probably_damaging(0.984) TCGA-CR-6484-01 16 313748 313748 G C ITFG3 Missense_Mutation p.E388Q 0.15 deleterious(0) possibly_damaging(0.821) TCGA-CR-6484-01 16 57555060 57555060 C T CCDC102A Missense_Mutation p.E281K 0.09 deleterious(0) possibly_damaging(0.758) TCGA-CR-6484-01 16 57741450 57741450 G A CCDC135 Missense_Mutation p.E313K 0.10 tolerated(0.05) probably_damaging(0.923) TCGA-CR-6484-01 16 67985892 67985892 G C SLC12A4 Missense_Mutation p.I324M 0.14 tolerated(0.08) benign(0.309) TCGA-CR-6484-01 16 71961649 71961649 C G IST1 Nonsense_Mutation p.S358* 0.04 TCGA-CR-6484-01 16 72057137 72057137 C G DHODH Missense_Mutation p.S298C 0.15 deleterious(0.02) possibly_damaging(0.647) TCGA-CR-6484-01 16 72124582 72124582 C G TXNL4B Missense_Mutation p.E23Q 0.13 deleterious(0.02) benign(0.03) TCGA-CR-6484-01 16 89350564 89350564 T A ANKRD11 Nonsense_Mutation p.K796* 0.09 TCGA-CR-6484-01 17 12656083 12656083 C T MYOCD Missense_Mutation p.T493M 0.28 tolerated(0.16) possibly_damaging(0.79) TCGA-CR-6484-01 17 28530257 28530257 G T SLC6A4 Nonsense_Mutation p.S584* 0.08 TCGA-CR-6484-01 17 34236190 34236190 C T AC015849.16 RNA 0.30 TCGA-CR-6484-01 17 38633892 38633892 G A TNS4 Missense_Mutation p.S699L 0.11 tolerated(0.05) benign(0.056) TCGA-CR-6484-01 17 39019596 39019596 C T KRT12 Splice_Site p.X366_splice 0.20 TCGA-CR-6484-01 17 40946629 40946629 C T WNK4 Intron 0.22 TCGA-CR-6484-01 17 43924109 43924109 G A SPPL2C Missense_Mutation p.E613K 0.21 deleterious_low_confidence(0.05) possibly_damaging(0.536) TCGA-CR-6484-01 17 5012863 5012863 C T ZNF232 Silent p.L108L 0.24 TCGA-CR-6484-01 17 65083187 65083187 C G HELZ Missense_Mutation p.R1751T 0.17 deleterious_low_confidence(0) unknown(0) TCGA-CR-6484-01 17 7216603 7216603 G C GPS2 Silent p.L244L 0.17 TCGA-CR-6484-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.24 TCGA-CR-6484-01 17 76989755 76989755 G C CANT1 Silent p.L361L 0.14 TCGA-CR-6484-01 17 7810759 7810759 G C CHD3 Missense_Mutation p.G1685A 0.10 possibly_damaging(0.794) TCGA-CR-6484-01 17 8077524 8077524 G C TMEM107 Missense_Mutation p.F146L 0.12 tolerated_low_confidence(0.22) possibly_damaging(0.45) TCGA-CR-6484-01 17 8157504 8157504 G A PFAS Missense_Mutation p.E55K 0.13 tolerated(0.19) benign(0.003) TCGA-CR-6484-01 18 45374862 45374862 C G SMAD2 Missense_Mutation p.M327I 0.09 tolerated(0.19) benign(0.001) TCGA-CR-6484-01 19 10080263 10080263 G A COL5A3 Silent p.I1362I 0.10 TCGA-CR-6484-01 19 11333759 11333759 G C DOCK6 Silent p.L993L 0.07 TCGA-CR-6484-01 19 16614078 16614078 C G C19orf44 Nonsense_Mutation p.S321* 0.09 TCGA-CR-6484-01 19 17571473 17571473 C T NXNL1 Missense_Mutation p.R69Q 0.21 deleterious(0.03) possibly_damaging(0.782) TCGA-CR-6484-01 19 18943117 18943117 C G UPF1 Missense_Mutation p.F33L 0.25 deleterious(0.01) benign(0.128) TCGA-CR-6484-01 19 20229332 20229332 G A ZNF90 Silent p.K323K 0.11 TCGA-CR-6484-01 19 21720644 21720644 G C ZNF429 Missense_Mutation p.E597Q 0.10 tolerated(0.06) benign(0.026) TCGA-CR-6484-01 19 23927132 23927132 G C ZNF681 Nonsense_Mutation p.S407* 0.10 TCGA-CR-6484-01 19 2444431 2444431 C G LMNB2 Silent p.L124L 0.14 TCGA-CR-6484-01 19 31039498 31039498 C G ZNF536 Missense_Mutation p.S991W 0.11 deleterious(0) possibly_damaging(0.778) TCGA-CR-6484-01 19 33592477 33592477 G C GPATCH1 Missense_Mutation p.K359N 0.16 tolerated(0.1) benign(0.022) TCGA-CR-6484-01 19 34912556 34912556 C G PDCD2L Silent p.L310L 0.11 TCGA-CR-6484-01 19 36594781 36594781 C G WDR62 Missense_Mutation p.P1351A 0.11 tolerated_low_confidence(0.2) benign(0.003) TCGA-CR-6484-01 19 42584276 42584276 G C ZNF574 Missense_Mutation p.K506N 0.12 deleterious(0.02) probably_damaging(0.937) TCGA-CR-6484-01 19 42797308 42797308 G C CIC Missense_Mutation p.E1224Q 0.20 probably_damaging(0.932) TCGA-CR-6484-01 19 4538721 4538721 G C LRG1 Missense_Mutation p.S92C 0.14 deleterious(0.01) possibly_damaging(0.784) TCGA-CR-6484-01 19 47570821 47570821 C T ZC3H4 Missense_Mutation p.E902K 0.18 unknown(0) TCGA-CR-6484-01 19 49535348 49535348 G C CGB2 5'UTR 0.13 TCGA-CR-6484-01 19 50099779 50099779 G C PRR12 Missense_Mutation p.K729N 0.24 possibly_damaging(0.607) TCGA-CR-6484-01 19 50394716 50394716 G C IL4I1 Silent p.L216L 0.13 TCGA-CR-6484-01 19 50902122 50902122 G A POLD1 Missense_Mutation p.R5Q 0.36 deleterious(0.02) unknown(0) TCGA-CR-6484-01 19 54758764 54758764 G A LILRB5 Silent p.P363P 0.08 TCGA-CR-6484-01 19 55824272 55824272 G A TMEM150B Silent p.L219L 0.33 TCGA-CR-6484-01 19 56204355 56204355 G C EPN1 Missense_Mutation p.D492H 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-CR-6484-01 19 56423845 56423845 C T NLRP13 Silent p.Q446Q 0.11 TCGA-CR-6484-01 19 57866643 57866643 C T ZNF304 Intron 0.09 TCGA-CR-6484-01 1 10032236 10032236 G C NMNAT1 Missense_Mutation p.M35I 0.16 deleterious(0.05) benign(0.11) TCGA-CR-6484-01 1 103364318 103364318 A G COL11A1 Silent p.G1384G 0.09 TCGA-CR-6484-01 1 120263736 120263736 G A PHGDH Intron 0.11 TCGA-CR-6484-01 1 120462868 120462868 C G NOTCH2 Silent p.V1821V 0.12 TCGA-CR-6484-01 1 151234661 151234661 G A PSMD4 Silent p.R17R 0.10 TCGA-CR-6484-01 1 151680372 151680372 C G CELF3 Missense_Mutation p.E176Q 0.12 tolerated(0.6) benign(0.083) TCGA-CR-6484-01 1 155893435 155893435 C T KIAA0907 Missense_Mutation p.E313K 0.19 deleterious(0.01) possibly_damaging(0.548) TCGA-CR-6484-01 1 156238112 156238112 C T SMG5 Missense_Mutation p.E270K 0.12 deleterious(0.01) benign(0.015) TCGA-CR-6484-01 1 156618362 156618362 G C BCAN Missense_Mutation p.E258Q 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-CR-6484-01 1 156641455 156641455 G C NES Missense_Mutation p.S842C 0.09 tolerated(0.05) benign(0.048) TCGA-CR-6484-01 1 161011934 161011934 C T USF1 Missense_Mutation p.G83D 0.10 tolerated(0.08) benign(0.08) TCGA-CR-6484-01 1 16101195 16101195 C T FBLIM1 Missense_Mutation p.S265F 0.09 deleterious(0.01) possibly_damaging(0.693) TCGA-CR-6484-01 1 161070553 161070553 C T PFDN2 Missense_Mutation p.E129K 0.09 tolerated(0.12) probably_damaging(0.942) TCGA-CR-6484-01 1 161569462 161569462 G A FCGR2C Intron 0.07 TCGA-CR-6484-01 1 16259153 16259153 G C SPEN Missense_Mutation p.D2140H 0.18 possibly_damaging(0.607) TCGA-CR-6484-01 1 162741855 162741855 G C DDR2 Missense_Mutation p.E516Q 0.08 tolerated(0.4) benign(0.322) TCGA-CR-6484-01 1 165872469 165872469 C G UCK2 Missense_Mutation p.Q184E 0.05 deleterious(0) probably_damaging(0.931) TCGA-CR-6484-01 1 171154965 171154965 G A FMO2 Missense_Mutation p.G38E 0.09 deleterious(0) probably_damaging(1) TCGA-CR-6484-01 1 173951999 173951999 C G RC3H1 Missense_Mutation p.E212Q 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-CR-6484-01 1 183209189 183209189 G A LAMC2 Silent p.L1028L 0.13 TCGA-CR-6484-01 1 186086731 186086731 G C HMCN1 Missense_Mutation p.D3942H 0.08 possibly_damaging(0.904) TCGA-CR-6484-01 1 200522745 200522745 G C KIF14 Missense_Mutation p.S1573C 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-CR-6484-01 1 201465408 201465408 C G CSRP1 Missense_Mutation p.K8N 0.16 tolerated(0.65) benign(0) TCGA-CR-6484-01 1 203708719 203708719 C G ATP2B4 Missense_Mutation p.Q1119E 0.14 tolerated(1) benign(0.001) TCGA-CR-6484-01 1 213414696 213414696 C A RPS6KC1 Nonsense_Mutation p.S626* 0.09 TCGA-CR-6484-01 1 222803432 222803432 C T MIA3 Missense_Mutation p.S957L 0.12 tolerated(1) benign(0.002) TCGA-CR-6484-01 1 234509430 234509430 C T COA6 5'UTR 0.13 TCGA-CR-6484-01 1 238045807 238045807 G C ZP4 Missense_Mutation p.S513C 0.16 deleterious(0.01) possibly_damaging(0.606) TCGA-CR-6484-01 1 24484051 24484051 C T IFNLR1 Missense_Mutation p.E378K 0.24 tolerated(0.13) benign(0.037) TCGA-CR-6484-01 1 248458752 248458752 C A OR2T12 Missense_Mutation p.M43I 0.21 deleterious(0.03) benign(0.026) TCGA-CR-6484-01 1 248486993 248486993 C T OR2M7 Missense_Mutation p.R293H 0.27 deleterious(0.04) benign(0.008) TCGA-CR-6484-01 1 27190100 27190100 G A SFN Missense_Mutation p.E133K 0.15 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-CR-6484-01 1 27721305 27721305 C T GPR3 3'UTR 0.18 TCGA-CR-6484-01 1 32622524 32622524 C G KPNA6 Missense_Mutation p.S70C 0.06 deleterious(0.02) possibly_damaging(0.563) TCGA-CR-6484-01 1 32678154 32678154 T C DCDC2B Silent p.Y197Y 0.13 TCGA-CR-6484-01 1 78470770 78470770 C G DNAJB4 5'UTR 0.17 TCGA-CR-6484-01 1 85488044 85488044 T C MCOLN3 Missense_Mutation p.T379A 0.13 deleterious(0.01) benign(0.25) TCGA-CR-6484-01 20 17623689 17623689 C T RRBP1 Missense_Mutation p.E233K 0.15 deleterious(0) possibly_damaging(0.502) TCGA-CR-6484-01 20 19981362 19981362 G C RIN2 Missense_Mutation p.E873Q 0.09 tolerated(0.12) benign(0.036) TCGA-CR-6484-01 20 23546668 23546668 C G CST9L Silent p.G99G 0.09 TCGA-CR-6484-01 20 3007774 3007774 C G PTPRA Missense_Mutation p.F572L 0.08 tolerated(0.24) probably_damaging(0.993) TCGA-CR-6484-01 20 3944599 3944599 G A RNF24 Silent p.L43L 0.10 TCGA-CR-6484-01 20 42965898 42965898 C - R3HDML Frame_Shift_Del p.Q35Sfs*10 0.18 TCGA-CR-6484-01 20 47691914 47691914 G C CSE1L Missense_Mutation p.E398Q 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-CR-6484-01 20 62172623 62172623 G C SRMS Silent p.V402V 0.09 TCGA-CR-6484-01 20 62705602 62705602 G C RGS19 Missense_Mutation p.F119L 0.12 deleterious(0) probably_damaging(0.999) TCGA-CR-6484-01 21 30318479 30318479 G A LTN1 Silent p.F1252F 0.06 TCGA-CR-6484-01 22 19384358 19384358 C T HIRA Silent p.R202R 0.09 TCGA-CR-6484-01 22 20094865 20094865 A G DGCR8 Missense_Mutation p.N690D 0.05 deleterious(0.03) possibly_damaging(0.902) TCGA-CR-6484-01 22 20755021 20755021 G C ZNF74 Missense_Mutation p.E74Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-CR-6484-01 22 28293876 28293876 C G PITPNB Missense_Mutation p.V68L 0.11 tolerated(0.22) possibly_damaging(0.648) TCGA-CR-6484-01 22 30038255 30038255 C T NF2 Missense_Mutation p.S143F 0.10 deleterious(0) probably_damaging(0.975) TCGA-CR-6484-01 22 30891384 30891384 C T SEC14L4 Missense_Mutation p.E94K 0.13 deleterious(0.04) benign(0.243) TCGA-CR-6484-01 22 31927062 31927062 C G SFI1 Missense_Mutation p.F95L 0.05 deleterious(0) possibly_damaging(0.539) TCGA-CR-6484-01 22 42781129 42781129 C A NFAM1 3'UTR 0.10 TCGA-CR-6484-01 2 101655014 101655014 C T TBC1D8 Missense_Mutation p.R380Q 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-CR-6484-01 2 101874329 101874329 C G CNOT11 Missense_Mutation p.F197L 0.10 tolerated(0.8) possibly_damaging(0.827) TCGA-CR-6484-01 2 108626898 108626898 G T SLC5A7 Missense_Mutation p.G442C 0.10 deleterious(0) probably_damaging(1) TCGA-CR-6484-01 2 10931955 10931955 C G PDIA6 Missense_Mutation p.E184Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-6484-01 2 112994207 112994207 G A ZC3H8 Nonsense_Mutation p.R146* 0.13 TCGA-CR-6484-01 2 11364578 11364578 G T ROCK2 Missense_Mutation p.P293T 0.09 deleterious(0) probably_damaging(1) TCGA-CR-6484-01 2 113950670 113950670 C G PSD4 Missense_Mutation p.F628L 0.05 deleterious(0) possibly_damaging(0.872) TCGA-CR-6484-01 2 136389447 136389447 T A R3HDM1 Missense_Mutation p.F192I 0.17 deleterious(0) probably_damaging(1) TCGA-CR-6484-01 2 160194206 160194206 G A BAZ2B Silent p.C1844C 0.14 TCGA-CR-6484-01 2 160194207 160194207 C A BAZ2B Missense_Mutation p.C1844F 0.14 benign(0.005) TCGA-CR-6484-01 2 163163360 163163360 C G IFIH1 Missense_Mutation p.E210Q 0.07 tolerated(0.14) benign(0.235) TCGA-CR-6484-01 2 179417226 179417226 G C TTN Nonsense_Mutation p.S30134* 0.16 TCGA-CR-6484-01 2 192225422 192225422 C T MYO1B Nonsense_Mutation p.Q210* 0.13 TCGA-CR-6484-01 2 223066840 223066840 G C PAX3 Missense_Mutation p.L415V 0.19 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-CR-6484-01 2 224809972 224809972 C G WDFY1 Missense_Mutation p.Q10H 0.12 tolerated(0.09) possibly_damaging(0.519) TCGA-CR-6484-01 2 232146798 232146798 G A ARMC9 Silent p.L526L 0.09 TCGA-CR-6484-01 2 27600989 27600989 C T ZNF513 Missense_Mutation p.G350E 0.12 tolerated(0.79) probably_damaging(0.931) TCGA-CR-6484-01 2 27695135 27695135 G A IFT172 Silent p.F502F 0.09 TCGA-CR-6484-01 2 31133797 31133797 C T GALNT14 Missense_Mutation p.M548I 0.10 tolerated(0.39) benign(0.034) TCGA-CR-6484-01 2 32289083 32289083 C T SPAST Silent p.F61F 0.09 TCGA-CR-6484-01 2 38537571 38537571 C T ATL2 Missense_Mutation p.E275K 0.14 tolerated(0.19) benign(0.023) TCGA-CR-6484-01 2 43986079 43986079 C T PLEKHH2 Missense_Mutation p.R1328W 0.09 deleterious(0) probably_damaging(0.981) TCGA-CR-6484-01 2 63831977 63831977 G A MDH1 Missense_Mutation p.D234N 0.16 tolerated(0.14) benign(0.438) TCGA-CR-6484-01 2 71189955 71189955 C T ATP6V1B1 Silent p.F278F 0.17 TCGA-CR-6484-01 2 95814960 95814960 G C ZNF514 3'UTR 0.16 TCGA-CR-6484-01 3 113798799 113798799 G C QTRTD1 Missense_Mutation p.E277Q 0.11 deleterious(0.03) benign(0.343) TCGA-CR-6484-01 3 122090639 122090639 G C CCDC58 Silent p.L20L 0.10 TCGA-CR-6484-01 3 127783682 127783682 G T SEC61A1 Intron 0.24 TCGA-CR-6484-01 3 142681168 142681168 G C PAQR9 Silent p.L337L 0.12 TCGA-CR-6484-01 3 149039271 149039271 G A TM4SF18 Silent p.I200I 0.10 TCGA-CR-6484-01 3 157160249 157160249 C T PTX3 Silent p.A209A 0.13 TCGA-CR-6484-01 3 188426294 188426294 G A LPP Intron 0.12 TCGA-CR-6484-01 3 194408636 194408636 G T FAM43A Missense_Mutation p.G361C 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-6484-01 3 2908579 2908579 G A CNTN4 Missense_Mutation p.V200M 0.13 tolerated(0.2) possibly_damaging(0.718) TCGA-CR-6484-01 3 39104562 39104562 G C WDR48 Missense_Mutation p.E24Q 0.10 deleterious(0.02) benign(0.407) TCGA-CR-6484-01 3 49293924 49293924 G C CCDC36 Missense_Mutation p.E332Q 0.18 tolerated(0.06) possibly_damaging(0.744) TCGA-CR-6484-01 4 125592795 125592795 C T ANKRD50 Missense_Mutation p.R546K 0.08 tolerated(0.11) benign(0.023) TCGA-CR-6484-01 4 25351204 25351204 G C ZCCHC4 Missense_Mutation p.E284Q 0.15 deleterious(0.04) probably_damaging(0.913) TCGA-CR-6484-01 4 40245288 40245288 G A RHOH Silent p.L94L 0.29 TCGA-CR-6484-01 4 41648692 41648692 C T LIMCH1 Missense_Mutation p.P483S 0.09 tolerated(0.08) possibly_damaging(0.881) TCGA-CR-6484-01 5 112175987 112175987 G T APC Missense_Mutation p.D1566Y 0.12 possibly_damaging(0.795) TCGA-CR-6484-01 5 112257912 112257912 G A REEP5 5'UTR 0.33 TCGA-CR-6484-01 5 125821386 125821386 G C GRAMD3 Missense_Mutation p.E342Q 0.09 tolerated(0.19) benign(0.086) TCGA-CR-6484-01 5 131953875 131953875 G A RAD50 Missense_Mutation p.R1093Q 0.13 tolerated(0.14) benign(0.004) TCGA-CR-6484-01 5 141307791 141307791 C T KIAA0141 Missense_Mutation p.R114W 0.14 deleterious(0.02) possibly_damaging(0.614) TCGA-CR-6484-01 5 150276107 150276107 C G ZNF300 Missense_Mutation p.E248Q 0.14 tolerated(0.26) benign(0.048) TCGA-CR-6484-01 5 154393495 154393495 G A KIF4B Missense_Mutation p.E26K 0.34 tolerated(0.12) probably_damaging(0.999) TCGA-CR-6484-01 5 160721121 160721121 G C GABRB2 Missense_Mutation p.F502L 0.11 deleterious(0) probably_damaging(0.991) TCGA-CR-6484-01 5 176519745 176519745 C T FGFR4 Silent p.I339I 0.06 TCGA-CR-6484-01 5 176794747 176794747 G A RGS14 Silent p.P220P 0.14 TCGA-CR-6484-01 5 218470 218470 C T SDHA 5'UTR 0.20 TCGA-CR-6484-01 5 35806816 35806816 C G SPEF2 Nonsense_Mutation p.S1673* 0.14 TCGA-CR-6484-01 5 54591224 54591224 C G DHX29 Missense_Mutation p.E212Q 0.11 tolerated(0.39) benign(0.179) TCGA-CR-6484-01 5 63256583 63256583 C G HTR1A Missense_Mutation p.E322Q 0.07 tolerated(0.34) benign(0.094) TCGA-CR-6484-01 6 112537671 112537671 C T LAMA4 Splice_Site p.X66_splice 0.17 TCGA-CR-6484-01 6 135239804 135239804 C T ALDH8A1 Missense_Mutation p.E405K 0.08 deleterious(0) probably_damaging(0.992) TCGA-CR-6484-01 6 144772564 144772564 C G UTRN Missense_Mutation p.Q711E 0.15 tolerated(0.12) benign(0.196) TCGA-CR-6484-01 6 157522076 157522076 G A ARID1B Missense_Mutation p.G1450S 0.23 probably_damaging(0.999) TCGA-CR-6484-01 6 17637953 17637953 G C NUP153 Missense_Mutation p.T632R 0.13 tolerated(0.09) benign(0.236) TCGA-CR-6484-01 6 24547320 24547320 G T KIAA0319 3'UTR 0.13 TCGA-CR-6484-01 6 26200015 26200015 G A HIST1H2BF Missense_Mutation p.E77K 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-CR-6484-01 6 26505360 26505360 C G BTN1A1 Missense_Mutation p.S212C 0.13 deleterious(0) probably_damaging(0.975) TCGA-CR-6484-01 6 28269871 28269871 C T PGBD1 Missense_Mutation p.S747L 0.13 deleterious(0) probably_damaging(0.998) TCGA-CR-6484-01 6 29430385 29430385 C G OR2H1 Missense_Mutation p.T280S 0.13 deleterious(0.01) benign(0.305) TCGA-CR-6484-01 6 30131831 30131831 C G TRIM15 Missense_Mutation p.Q124E 0.20 tolerated(0.2) benign(0.15) TCGA-CR-6484-01 6 31778792 31778792 C T HSPA1L Missense_Mutation p.E320K 0.13 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CR-6484-01 6 33371665 33371665 G C KIFC1 Missense_Mutation p.R172T 0.10 tolerated(0.52) benign(0.039) TCGA-CR-6484-01 6 39284586 39284586 G T KCNK16 Missense_Mutation p.S211R 0.13 deleterious(0) probably_damaging(0.994) TCGA-CR-6484-01 6 57015615 57015615 C T ZNF451 Silent p.L903L 0.13 TCGA-CR-6484-01 6 84895136 84895136 C G KIAA1009 Missense_Mutation p.E478Q 0.08 tolerated(0.21) probably_damaging(0.917) TCGA-CR-6484-01 6 97247016 97247016 G A GPR63 Silent p.L198L 0.05 TCGA-CR-6484-01 7 100229801 100229801 G A TFR2 Silent p.F290F 0.18 TCGA-CR-6484-01 7 142460822 142460822 T G PRSS1 Missense_Mutation p.V232G 0.19 deleterious(0) probably_damaging(1) TCGA-CR-6484-01 7 150164001 150164001 C T GIMAP8 Missense_Mutation p.S72L 0.16 deleterious(0.01) possibly_damaging(0.903) TCGA-CR-6484-01 7 150713883 150713883 G A ATG9B Silent p.F771F 0.23 TCGA-CR-6484-01 7 33044999 33044999 G A FKBP9 3'UTR 0.20 TCGA-CR-6484-01 7 33066516 33066516 G A NT5C3A Silent p.F55F 0.13 TCGA-CR-6484-01 7 37172813 37172813 G A ELMO1 Silent p.F371F 0.09 TCGA-CR-6484-01 7 39606114 39606114 G C YAE1D1 Missense_Mutation p.E33Q 0.12 deleterious(0) possibly_damaging(0.849) TCGA-CR-6484-01 7 40041594 40041594 G C CDK13 Missense_Mutation p.D773H 0.16 deleterious(0) probably_damaging(0.999) TCGA-CR-6484-01 7 40723654 40723654 G C SUGCT Splice_Site p.X371_splice 0.17 TCGA-CR-6484-01 7 45113081 45113081 G A CCM2 Missense_Mutation p.V297M 0.13 deleterious(0.01) benign(0.357) TCGA-CR-6484-01 7 4800700 4800700 G C FOXK1 Missense_Mutation p.E568Q 0.08 tolerated(0.06) possibly_damaging(0.772) TCGA-CR-6484-01 7 75643194 75643194 G A STYXL1 Nonsense_Mutation p.Q107* 0.15 TCGA-CR-6484-01 7 75896598 75896598 G A SRRM3 Missense_Mutation p.E285K 0.25 deleterious(0.01) unknown(0) TCGA-CR-6484-01 7 82453635 82453635 T C PCLO Missense_Mutation p.H4838R 0.19 unknown(0) TCGA-CR-6484-01 7 91726162 91726162 G C AKAP9 Missense_Mutation p.E3297Q 0.14 probably_damaging(0.999) TCGA-CR-6484-01 7 92731898 92731898 T C SAMD9 Silent p.E1171E 0.13 TCGA-CR-6484-01 7 94057615 94057615 G T COL1A2 Missense_Mutation p.W1179C 0.08 unknown(0) TCGA-CR-6484-01 7 99705659 99705659 G A TAF6 Missense_Mutation p.P553S 0.09 tolerated(0.19) benign(0.362) TCGA-CR-6484-01 7 99965048 99965048 G C PILRB 3'UTR 0.15 TCGA-CR-6484-01 8 100975155 100975155 G C RGS22 Missense_Mutation p.L1223V 0.10 deleterious(0) probably_damaging(0.996) TCGA-CR-6484-01 8 113236913 113236913 G A CSMD3 3'UTR 0.39 TCGA-CR-6484-01 8 124801858 124801858 G C FAM91A1 Missense_Mutation p.Q428H 0.12 tolerated(0.16) possibly_damaging(0.504) TCGA-CR-6484-01 8 139890087 139890087 G A COL22A1 Silent p.I188I 0.14 TCGA-CR-6484-01 8 144124445 144124445 C G C8orf31 Silent p.S9S 0.08 TCGA-CR-6484-01 8 33454978 33454978 C T DUSP26 Missense_Mutation p.R19Q 0.15 tolerated(0.19) possibly_damaging(0.885) TCGA-CR-6484-01 8 37690552 37690552 C G GPR124 Missense_Mutation p.I374M 0.09 deleterious(0) probably_damaging(0.997) TCGA-CR-6484-01 8 42611780 42611780 G C CHRNA6 Missense_Mutation p.L188V 0.06 deleterious(0) probably_damaging(0.999) TCGA-CR-6484-01 8 61736506 61736506 C T CHD7 Silent p.V1103V 0.09 TCGA-CR-6484-01 8 67577807 67577807 C G VCPIP1 Missense_Mutation p.D463H 0.11 deleterious(0) possibly_damaging(0.553) TCGA-CR-6484-01 8 72755828 72755828 C A RP11-383H13.1 Silent p.R64R 0.16 TCGA-CR-6484-01 8 88885717 88885717 C T DCAF4L2 Silent p.A161A 0.39 TCGA-CR-6484-01 8 90937302 90937302 C T OSGIN2 Missense_Mutation p.H398Y 0.10 deleterious(0.01) possibly_damaging(0.52) TCGA-CR-6484-01 9 100412873 100412873 G C NCBP1 Missense_Mutation p.R329T 0.11 deleterious(0) possibly_damaging(0.616) TCGA-CR-6484-01 9 127982928 127982928 G C RABEPK Missense_Mutation p.E159Q 0.12 tolerated(0.1) possibly_damaging(0.856) TCGA-CR-6484-01 9 12821469 12821469 G C LURAP1L Missense_Mutation p.E133Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-6484-01 9 134014764 134014764 G T NUP214 Missense_Mutation p.D368Y 0.21 unknown(0) TCGA-CR-6484-01 9 139379468 139379468 C A C9orf163 Missense_Mutation p.L190I 0.26 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-CR-6484-01 9 140099678 140099678 G A TMEM203 Silent p.F63F 0.15 TCGA-CR-6484-01 9 34621456 34621456 C T ARID3C Silent p.%3D 0.10 TCGA-CR-6484-01 9 34635701 34635701 G C SIGMAR1 Missense_Mutation p.F200L 0.20 deleterious(0.05) possibly_damaging(0.792) TCGA-CR-6484-01 9 37512610 37512610 C T FBXO10 Silent p.T935T 0.11 TCGA-CR-6484-01 9 6605142 6605142 G A GLDC Missense_Mutation p.H284Y 0.16 deleterious(0) possibly_damaging(0.717) TCGA-CR-6484-01 9 88557141 88557141 G C NAA35 Missense_Mutation p.E23Q 0.13 tolerated(0.43) benign(0.005) TCGA-CR-6484-01 X 100911437 100911437 C G ARMCX2 Missense_Mutation p.D380H 0.17 deleterious(0) probably_damaging(1) TCGA-CR-6484-01 X 13778324 13778324 A T OFD1 Missense_Mutation p.N582I 0.15 deleterious(0.02) benign(0.006) TCGA-CR-6484-01 X 15266983 15266983 C A ASB9 Missense_Mutation p.A215S 0.16 deleterious(0) possibly_damaging(0.752) TCGA-CR-6484-01 X 153580056 153580056 C A FLNA Nonsense_Mutation p.E2306* 0.14 TCGA-CR-6484-01 X 15584408 15584408 G C ACE2 Missense_Mutation p.I694M 0.17 deleterious_low_confidence(0.02) benign(0.043) TCGA-CR-6484-01 X 53589797 53589797 C T HUWE1 Missense_Mutation p.R2400Q 0.16 probably_damaging(0.945) TCGA-CR-6484-01 X 54321097 54321097 G C WNK3 Missense_Mutation p.L528V 0.20 tolerated(0.56) benign(0.001) TCGA-CR-6484-01 X 5821900 5821900 G C NLGN4X Missense_Mutation p.F273L 0.12 deleterious(0) probably_damaging(0.988) TCGA-CR-6484-01 X 88008988 88008988 G C CPXCR1 Missense_Mutation p.E191D 0.11 tolerated(0.13) benign(0) TCGA-CR-6484-01 X 91134270 91134270 C G PCDH11X Missense_Mutation p.P1011A 0.16 tolerated(0.21) benign(0.028) TCGA-CR-6484-01 X 9683006 9683006 G A TBL1X Missense_Mutation p.R557Q 0.21 tolerated(0.29) benign(0.007) TCGA-CR-6487-01 10 102683830 102683830 G C FAM178A Missense_Mutation p.E358Q 0.16 tolerated(0.08) possibly_damaging(0.87) TCGA-CR-6487-01 10 103339236 103339236 G A POLL Nonsense_Mutation p.R568* 0.22 TCGA-CR-6487-01 10 106113607 106113607 C T CCDC147 5'UTR 0.35 TCGA-CR-6487-01 10 127726869 127726869 G A ADAM12 Missense_Mutation p.H767Y 0.14 tolerated(0.46) benign(0.003) TCGA-CR-6487-01 10 43606744 43606744 G A RET Silent p.T451T 0.13 TCGA-CR-6487-01 10 51808014 51808014 G A RP11-324H6.5 RNA 0.19 TCGA-CR-6487-01 10 7774362 7774362 C T ITIH2 Missense_Mutation p.S570L 0.12 tolerated(0.08) benign(0.009) TCGA-CR-6487-01 10 79760814 79760814 C A POLR3A Nonsense_Mutation p.G800* 0.13 TCGA-CR-6487-01 10 95276830 95276830 A T CEP55 Missense_Mutation p.Q273L 0.15 tolerated(0.07) benign(0.104) TCGA-CR-6487-01 10 95790868 95790868 C T PLCE1 Missense_Mutation p.A22V 0.05 deleterious_low_confidence(0.01) benign(0.004) TCGA-CR-6487-01 11 102816405 102816405 C T MMP13 Missense_Mutation p.D429N 0.23 tolerated(0.78) benign(0.003) TCGA-CR-6487-01 11 110450902 110450902 A - ARHGAP20 Frame_Shift_Del p.L923Yfs*5 0.20 TCGA-CR-6487-01 11 11971469 11971469 A G USP47 Missense_Mutation p.K1060E 0.13 tolerated(0.17) possibly_damaging(0.795) TCGA-CR-6487-01 11 11971484 11971484 C T USP47 Missense_Mutation p.R1065W 0.14 deleterious(0.02) probably_damaging(0.986) TCGA-CR-6487-01 11 123676380 123676380 G A OR6M1 Silent p.P226P 0.17 TCGA-CR-6487-01 11 17140215 17140215 G T PIK3C2A Silent p.I1004I 0.18 TCGA-CR-6487-01 11 17548829 17548829 G A USH1C Missense_Mutation p.T146I 0.15 tolerated(0.32) probably_damaging(0.955) TCGA-CR-6487-01 11 5221401 5221401 T A OR51V1 Missense_Mutation p.Y177F 0.22 tolerated(0.38) probably_damaging(0.999) TCGA-CR-6487-01 11 55594821 55594821 C T OR5L2 Silent p.L43L 0.21 TCGA-CR-6487-01 11 55606633 55606633 G A OR5D16 Missense_Mutation p.V136I 0.18 tolerated(0.06) benign(0.259) TCGA-CR-6487-01 11 6432243 6432243 C T APBB1 Missense_Mutation p.G112D 0.20 tolerated(0.17) possibly_damaging(0.778) TCGA-CR-6487-01 12 104370796 104370797 - AACTTC TDG In_Frame_Ins p.E42_E43insLQ 0.20 TCGA-CR-6487-01 12 120510422 120510422 C T CCDC64 Silent p.D399D 0.22 TCGA-CR-6487-01 12 121125205 121125205 G A MLEC Missense_Mutation p.V36M 0.31 tolerated(0.12) unknown(0) TCGA-CR-6487-01 12 3931108 3931108 G A PARP11 Missense_Mutation p.T160M 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-CR-6487-01 12 48131465 48131465 G A RAPGEF3 Missense_Mutation p.S886L 0.24 deleterious(0) benign(0.089) TCGA-CR-6487-01 12 49438595 49438595 G C KMT2D Nonsense_Mutation p.S1632* 0.20 TCGA-CR-6487-01 12 49448693 49448693 G A KMT2D Nonsense_Mutation p.Q56* 0.21 TCGA-CR-6487-01 12 50480110 50480110 C T SMARCD1 Missense_Mutation p.A115V 0.18 tolerated(0.2) benign(0.069) TCGA-CR-6487-01 12 6664531 6664531 A G IFFO1 Missense_Mutation p.V222A 0.12 tolerated(0.07) benign(0.292) TCGA-CR-6487-01 12 6933294 6933294 G A GPR162 Missense_Mutation p.R77H 0.15 tolerated(0.09) benign(0.034) TCGA-CR-6487-01 12 78513538 78513538 C T NAV3 Missense_Mutation p.R1188C 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-CR-6487-01 13 100915005 100915005 C G PCCA Missense_Mutation p.Q247E 0.17 tolerated(0.31) benign(0.009) TCGA-CR-6487-01 13 48954379 48954379 T G RB1 Splice_Site p.X500_splice 0.27 TCGA-CR-6487-01 14 101512279 101512279 T C MIR381 RNA 0.24 TCGA-CR-6487-01 14 21424548 21424548 G A RNASE2 3'UTR 0.23 TCGA-CR-6487-01 14 35786477 35786477 G C PSMA6 Missense_Mutation p.D236H 0.18 deleterious(0) possibly_damaging(0.775) TCGA-CR-6487-01 14 68252948 68252948 G A ZFYVE26 Nonsense_Mutation p.R1008* 0.28 TCGA-CR-6487-01 14 71493536 71493536 C T PCNX Nonsense_Mutation p.Q1135* 0.18 TCGA-CR-6487-01 14 74726405 74726405 G A VSX2 Missense_Mutation p.R227Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-CR-6487-01 14 90433740 90433740 C T TDP1 Silent p.L211L 0.18 TCGA-CR-6487-01 14 90650902 90650902 A G KCNK13 Missense_Mutation p.N261S 0.21 deleterious(0) probably_damaging(1) TCGA-CR-6487-01 14 96783566 96783566 G A ATG2B Silent p.D1042D 0.16 TCGA-CR-6487-01 15 58925416 58925416 A G ADAM10 Silent p.V385V 0.33 TCGA-CR-6487-01 15 59455404 59455404 C T MYO1E Missense_Mutation p.R860H 0.19 tolerated(0.08) benign(0.013) TCGA-CR-6487-01 16 14294323 14294323 C T MKL2 Intron 0.18 TCGA-CR-6487-01 16 2816182 2816182 C T SRRM2 Nonsense_Mutation p.R1885* 0.14 TCGA-CR-6487-01 16 67318623 67318623 C T PLEKHG4 Missense_Mutation p.T567M 0.14 tolerated(0.11) benign(0.003) TCGA-CR-6487-01 16 69703948 69703948 G A NFAT5 Missense_Mutation p.E480K 0.17 probably_damaging(0.977) TCGA-CR-6487-01 16 75146543 75146543 C T LDHD Missense_Mutation p.E439K 0.20 tolerated(0.17) benign(0.021) TCGA-CR-6487-01 17 33288392 33288392 G C CCT6B Silent p.V7V 0.09 TCGA-CR-6487-01 17 34190080 34190080 C G C17orf66 Missense_Mutation p.E225D 0.16 tolerated(0.41) benign(0.145) TCGA-CR-6487-01 17 4688867 4688867 G A VMO1 Silent p.L133L 0.16 TCGA-CR-6487-01 17 48750428 48750428 G A ABCC3 Missense_Mutation p.A780T 0.21 deleterious(0) possibly_damaging(0.524) TCGA-CR-6487-01 17 62238187 62238187 C T TEX2 Silent p.L933L 0.19 TCGA-CR-6487-01 18 13884716 13884716 T A MC2R Missense_Mutation p.N268Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-CR-6487-01 18 2946226 2946226 G A LPIN2 Intron 0.18 TCGA-CR-6487-01 18 77287639 77287639 G A NFATC1 3'UTR 0.46 TCGA-CR-6487-01 18 77287652 77287652 G A NFATC1 3'UTR 0.38 TCGA-CR-6487-01 18 77664144 77664144 G C PQLC1 Missense_Mutation p.F216L 0.41 deleterious(0) possibly_damaging(0.513) TCGA-CR-6487-01 19 12258584 12258584 A T ZNF625 Missense_Mutation p.F13I 0.09 deleterious(0) probably_damaging(0.946) TCGA-CR-6487-01 19 18546719 18546719 C T ISYNA1 Missense_Mutation p.V330M 0.20 deleterious(0) probably_damaging(0.997) TCGA-CR-6487-01 19 41765694 41765694 C T AXL Missense_Mutation p.A857V 0.14 tolerated(0.09) benign(0.194) TCGA-CR-6487-01 19 46388584 46388584 G A IRF2BP1 Missense_Mutation p.A150V 0.25 deleterious(0.02) possibly_damaging(0.75) TCGA-CR-6487-01 19 51361366 51361366 C A KLK3 Missense_Mutation p.F96L 0.25 tolerated(0.08) benign(0.36) TCGA-CR-6487-01 19 53384034 53384034 C T ZNF320 Missense_Mutation p.A449T 0.08 tolerated(0.41) benign(0.135) TCGA-CR-6487-01 19 55239242 55239242 C T KIR3DL3 Missense_Mutation p.A174V 0.57 deleterious(0.04) benign(0.348) TCGA-CR-6487-01 19 56133023 56133023 C T ZNF784 3'UTR 0.12 TCGA-CR-6487-01 19 56369057 56369057 C G NLRP4 Missense_Mutation p.Q100E 0.19 deleterious(0.02) benign(0.025) TCGA-CR-6487-01 19 56952505 56952505 G A ZNF667 3'UTR 0.04 TCGA-CR-6487-01 19 57037352 57037352 A G ZNF471 3'UTR 0.15 TCGA-CR-6487-01 19 57328787 57328787 G C PEG3 Missense_Mutation p.F341L 0.12 tolerated(0.74) benign(0.002) TCGA-CR-6487-01 19 58967762 58967762 C T ZNF324B Missense_Mutation p.T484M 0.14 deleterious(0.03) probably_damaging(0.969) TCGA-CR-6487-01 1 11151235 11151235 G A EXOSC10 Missense_Mutation p.A160V 0.18 tolerated(0.09) benign(0.206) TCGA-CR-6487-01 1 112031442 112031442 G A ADORA3 Missense_Mutation p.T221I 0.26 deleterious_low_confidence(0.03) benign(0.078) TCGA-CR-6487-01 1 117984891 117984891 C G MAN1A2 Silent p.L298L 0.12 TCGA-CR-6487-01 1 12056346 12056346 G A MFN2 Missense_Mutation p.E149K 0.11 deleterious(0.01) benign(0.116) TCGA-CR-6487-01 1 152331346 152331346 C G FLG2 Missense_Mutation p.L5F 0.16 unknown(0) TCGA-CR-6487-01 1 154029395 154029395 C G NUP210L Missense_Mutation p.E1046Q 0.17 tolerated(0.16) possibly_damaging(0.53) TCGA-CR-6487-01 1 154525286 154525286 G C UBE2Q1 Missense_Mutation p.S247C 0.16 deleterious(0.03) benign(0.093) TCGA-CR-6487-01 1 165398095 165398095 G C RXRG Missense_Mutation p.P53R 0.20 deleterious_low_confidence(0) benign(0.086) TCGA-CR-6487-01 1 180240979 180240979 C T LHX4 Nonsense_Mutation p.Q206* 0.17 TCGA-CR-6487-01 1 205306592 205306592 C T KLHDC8A Missense_Mutation p.A330T 0.22 deleterious(0.02) benign(0.069) TCGA-CR-6487-01 1 228476582 228476582 C T OBSCN Silent p.T3873T 0.18 TCGA-CR-6487-01 1 35223201 35223201 C T GJB5 Silent p.L90L 0.20 TCGA-CR-6487-01 1 5935081 5935081 C A NPHP4 Missense_Mutation p.S966I 0.12 deleterious(0.02) benign(0.436) TCGA-CR-6487-01 1 87805751 87805751 C T LMO4 Missense_Mutation p.R119W 0.21 deleterious(0.05) probably_damaging(0.964) TCGA-CR-6487-01 1 94505666 94505666 C T ABCA4 Silent p.S1180S 0.25 TCGA-CR-6487-01 1 99771596 99771596 C T LPPR4 Missense_Mutation p.S441F 0.19 deleterious(0) probably_damaging(0.999) TCGA-CR-6487-01 20 8719969 8719969 T C PLCB1 Missense_Mutation p.I757T 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-6487-01 21 30303556 30303556 G A LTN1 Missense_Mutation p.S1766L 0.17 deleterious(0.01) possibly_damaging(0.904) TCGA-CR-6487-01 21 34823152 34823152 A G TMEM50B Silent p.F150F 0.24 TCGA-CR-6487-01 21 41725414 41725414 C T DSCAM Silent p.V304V 0.15 TCGA-CR-6487-01 21 43221624 43221624 C A PRDM15 Nonsense_Mutation p.E1434* 0.19 TCGA-CR-6487-01 22 29966459 29966459 G A NIPSNAP1 Missense_Mutation p.P54L 0.13 deleterious(0) possibly_damaging(0.796) TCGA-CR-6487-01 22 41531855 41531855 C T EP300 Nonsense_Mutation p.Q523* 0.21 TCGA-CR-6487-01 22 43610219 43610219 C T SCUBE1 Missense_Mutation p.G644S 0.05 tolerated(0.53) benign(0.008) TCGA-CR-6487-01 2 140992403 140992403 C T LRP1B Silent p.A4537A 0.14 TCGA-CR-6487-01 2 15415898 15415898 C G NBAS Missense_Mutation p.E1812Q 0.11 tolerated(0.32) benign(0.147) TCGA-CR-6487-01 2 171055792 171055792 C T MYO3B Missense_Mutation p.T26I 0.15 tolerated(0.16) benign(0.265) TCGA-CR-6487-01 2 179604387 179604387 C T TTN Missense_Mutation p.E4525K 0.21 TCGA-CR-6487-01 2 210559886 210559886 C A MAP2 Missense_Mutation p.Q998K 0.11 tolerated_low_confidence(0.42) benign(0.155) TCGA-CR-6487-01 2 211459299 211459299 C T CPS1 Missense_Mutation p.P417L 0.19 tolerated(0.05) probably_damaging(0.962) TCGA-CR-6487-01 2 219559301 219559301 C T STK36 Silent p.D818D 0.17 TCGA-CR-6487-01 2 234775835 234775835 C G MSL3P1 RNA 0.11 TCGA-CR-6487-01 2 238277502 238277502 C T COL6A3 Missense_Mutation p.R1535H 0.14 probably_damaging(1) TCGA-CR-6487-01 2 39963988 39963988 C G THUMPD2 Missense_Mutation p.D467H 0.15 tolerated(0.15) benign(0.002) TCGA-CR-6487-01 3 101370392 101370392 C A ZBTB11 Missense_Mutation p.R927L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CR-6487-01 3 118865322 118865322 G A C3orf30 Missense_Mutation p.D96N 0.10 tolerated(0.67) benign(0.002) TCGA-CR-6487-01 3 121649690 121649690 T C SLC15A2 Silent p.F519F 0.17 TCGA-CR-6487-01 3 138417818 138417818 C G PIK3CB Missense_Mutation p.E567D 0.15 tolerated(0.42) benign(0.107) TCGA-CR-6487-01 3 142137436 142137436 T C XRN1 Missense_Mutation p.E419G 0.17 deleterious(0.01) benign(0.044) TCGA-CR-6487-01 3 164750459 164750459 T C SI Missense_Mutation p.T863A 0.08 tolerated(0.47) benign(0) TCGA-CR-6487-01 3 167543055 167543055 C T SERPINI1 Nonsense_Mutation p.R393* 0.08 TCGA-CR-6487-01 3 176769363 176769363 C T TBL1XR1 Missense_Mutation p.S119N 0.04 tolerated(0.75) benign(0.001) TCGA-CR-6487-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-CR-6487-01 3 179069808 179069808 T C MFN1 Missense_Mutation p.V78A 0.16 deleterious(0) probably_damaging(0.997) TCGA-CR-6487-01 3 193166024 193166024 G C ATP13A4 Nonsense_Mutation p.S708* 0.06 TCGA-CR-6487-01 3 197241274 197241274 G A BDH1 Silent p.L141L 0.06 TCGA-CR-6487-01 3 52521429 52521429 G A NISCH Missense_Mutation p.E641K 0.33 tolerated(0.29) benign(0.021) TCGA-CR-6487-01 4 146467854 146467854 G A SMAD1 Splice_Site p.X259_splice 0.28 TCGA-CR-6487-01 4 159825811 159825811 C T FNIP2 3'UTR 0.33 TCGA-CR-6487-01 4 2661312 2661312 G A FAM193A Missense_Mutation p.E182K 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-CR-6487-01 4 44449818 44449818 G A KCTD8 Silent p.I241I 0.24 TCGA-CR-6487-01 5 138145823 138145823 C G CTNNA1 Missense_Mutation p.S133C 0.31 deleterious(0.02) probably_damaging(0.909) TCGA-CR-6487-01 5 139918552 139918552 C T ANKHD1 Nonsense_Mutation p.Q2485* 0.20 TCGA-CR-6487-01 5 140165875 140165875 A G PCDHA1 5'Flank 0.17 TCGA-CR-6487-01 5 140710925 140710925 C T PCDHGA1 Missense_Mutation p.T225I 0.23 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-CR-6487-01 5 140782613 140782613 C T PCDHGA9 Missense_Mutation p.R32C 0.16 deleterious_low_confidence(0.01) benign(0.445) TCGA-CR-6487-01 5 140903714 140903714 A G DIAPH1 Silent p.R1219R 0.18 TCGA-CR-6487-01 5 141248480 141248480 A C PCDH1 Missense_Mutation p.L186R 0.19 tolerated(1) probably_damaging(1) TCGA-CR-6487-01 5 153149822 153149822 G A GRIA1 Missense_Mutation p.R716Q 0.23 deleterious(0) possibly_damaging(0.686) TCGA-CR-6487-01 5 74981280 74981280 C G POC5 Missense_Mutation p.E387Q 0.11 deleterious(0.01) probably_damaging(0.969) TCGA-CR-6487-01 6 10770373 10770373 T C MAK Missense_Mutation p.H563R 0.15 tolerated(0.09) benign(0.097) TCGA-CR-6487-01 6 29913255 29913255 G A HLA-A 3'UTR 0.17 TCGA-CR-6487-01 6 33768873 33768873 G A MLN Missense_Mutation p.T23M 0.14 deleterious(0.04) benign(0.146) TCGA-CR-6487-01 6 39513399 39513399 G A KIF6 Missense_Mutation p.A416V 0.08 deleterious(0.03) benign(0.285) TCGA-CR-6487-01 6 40360590 40360590 C T LRFN2 Missense_Mutation p.D488N 0.12 tolerated(0.14) possibly_damaging(0.683) TCGA-CR-6487-01 6 4998960 4998960 C T RPP40 Nonsense_Mutation p.W183* 0.17 TCGA-CR-6487-01 6 5369231 5369231 A G FARS2 Missense_Mutation p.N143S 0.12 tolerated(0.67) benign(0.039) TCGA-CR-6487-01 6 7229769 7229769 G A RREB1 Silent p.S479S 0.11 TCGA-CR-6487-01 6 90426527 90426528 CT - MDN1 Frame_Shift_Del p.E2195Vfs*6 0.21 TCGA-CR-6487-01 7 102136619 102136619 G C RASA4B Missense_Mutation p.L347V 0.06 deleterious(0) probably_damaging(0.96) TCGA-CR-6487-01 7 129367082 129367082 G A NRF1 Missense_Mutation p.E409K 0.13 tolerated(0.05) benign(0.001) TCGA-CR-6487-01 7 31692184 31692184 A G CCDC129 Missense_Mutation p.Q985R 0.15 tolerated(0.13) benign(0.022) TCGA-CR-6487-01 8 110456922 110456922 A T PKHD1L1 Missense_Mutation p.E1608D 0.28 tolerated(0.48) benign(0.003) TCGA-CR-6487-01 8 113960032 113960032 C T CSMD3 Missense_Mutation p.G499R 0.15 deleterious(0) possibly_damaging(0.895) TCGA-CR-6487-01 8 142178285 142178285 G A DENND3 Missense_Mutation p.V566I 0.08 tolerated(0.62) benign(0.008) TCGA-CR-6487-01 8 22106636 22106636 C T POLR3D Silent p.L245L 0.09 TCGA-CR-6487-01 8 39022696 39022696 G A ADAM32 Missense_Mutation p.D272N 0.13 deleterious(0) probably_damaging(1) TCGA-CR-6487-01 8 55542592 55542592 T C RP1 Silent p.N2050N 0.10 TCGA-CR-6487-01 8 89180146 89180146 C T MMP16 Missense_Mutation p.R154H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-CR-6487-01 9 108151336 108151336 G C SLC44A1 Nonstop_Mutation p.*658Sext*2 0.17 TCGA-CR-6487-01 9 116353615 116353615 G T RGS3 Missense_Mutation p.M1006I 0.12 tolerated(0.12) benign(0.003) TCGA-CR-6487-01 9 125282179 125282179 A G OR1J4 Missense_Mutation p.T254A 0.18 tolerated_low_confidence(0.43) benign(0.014) TCGA-CR-6487-01 9 140174030 140174030 G A TOR4A Missense_Mutation p.V297M 0.18 deleterious(0) probably_damaging(0.927) TCGA-CR-6487-01 9 140657192 140657192 C T EHMT1 Missense_Mutation p.R523W 0.17 deleterious(0) probably_damaging(0.991) TCGA-CR-6487-01 9 72521027 72521027 C T C9orf135 Missense_Mutation p.T222I 0.15 deleterious(0.01) possibly_damaging(0.624) TCGA-CR-6487-01 X 117527109 117527109 C T WDR44 Missense_Mutation p.A234V 0.52 deleterious_low_confidence(0.01) benign(0.206) TCGA-CR-6487-01 X 129272623 129272623 C T AIFM1 Silent p.T304T 0.60 TCGA-CR-6487-01 X 53426517 53426517 G A SMC1A Silent p.L852L 0.33 TCGA-CR-6487-01 X 77218129 77218129 C G ATP7A Intron 0.17 TCGA-CR-6488-01 10 102296171 102296171 C A HIF1AN Missense_Mutation p.P61T 0.17 deleterious(0) probably_damaging(1) TCGA-CR-6488-01 10 102987175 102987175 C T LBX1 Missense_Mutation p.G233D 0.22 tolerated_low_confidence(0.52) benign(0.001) TCGA-CR-6488-01 11 3661085 3661085 G T ART5 Missense_Mutation p.H192N 0.14 deleterious(0.04) benign(0.102) TCGA-CR-6488-01 11 64508502 64508502 C T RASGRP2 Missense_Mutation p.A97T 0.20 tolerated(0.37) benign(0.42) TCGA-CR-6488-01 11 7689764 7689764 C A CYB5R2 Silent p.T139T 0.21 TCGA-CR-6488-01 12 10584759 10584759 C A KLRC2 Missense_Mutation p.R177L 0.29 deleterious(0.01) possibly_damaging(0.795) TCGA-CR-6488-01 12 120574384 120574384 C T GCN1L1 Silent p.L2310L 0.18 TCGA-CR-6488-01 12 14923918 14923918 G A HIST4H4 Missense_Mutation p.A34V 0.38 deleterious(0.04) possibly_damaging(0.548) TCGA-CR-6488-01 14 20249043 20249043 G T OR4M1 Missense_Mutation p.A188S 0.07 deleterious(0.02) probably_damaging(1) TCGA-CR-6488-01 15 28230313 28230313 G A OCA2 Missense_Mutation p.R421W 0.27 deleterious(0) probably_damaging(0.992) TCGA-CR-6488-01 16 29891363 29891363 G A SEZ6L2 Silent p.F465F 0.24 TCGA-CR-6488-01 16 70404240 70404240 C T DDX19A Nonsense_Mutation p.R379* 0.09 TCGA-CR-6488-01 17 34935802 34935802 C T GGNBP2 Nonsense_Mutation p.Q325* 0.05 TCGA-CR-6488-01 17 36963178 36963178 G C CWC25 Missense_Mutation p.Q248E 0.19 tolerated(1) benign(0.002) TCGA-CR-6488-01 17 42430078 42430078 G T GRN Missense_Mutation p.C565F 0.12 deleterious(0) probably_damaging(0.998) TCGA-CR-6488-01 17 66883568 66883568 G A ABCA8 Missense_Mutation p.S1035F 0.09 deleterious(0) benign(0.436) TCGA-CR-6488-01 18 24442577 24442577 A G AQP4 Intron 0.07 TCGA-CR-6488-01 18 2923796 2923796 T A LPIN2 Silent p.A717A 0.19 TCGA-CR-6488-01 18 2946042 2946042 A G LPIN2 Intron 0.08 TCGA-CR-6488-01 18 2946105 2946106 - TC LPIN2 Intron 0.09 TCGA-CR-6488-01 19 19655208 19655208 G A CILP2 Silent p.A618A 0.05 TCGA-CR-6488-01 19 6004277 6004277 T A RFX2 Nonsense_Mutation p.K479* 0.22 TCGA-CR-6488-01 1 186072800 186072800 G A HMCN1 Silent p.Q3590Q 0.19 TCGA-CR-6488-01 1 40703344 40703344 G A RLF Silent p.T990T 0.16 TCGA-CR-6488-01 20 62680604 62680604 A C SOX18 Missense_Mutation p.M89R 0.37 deleterious(0) benign(0.022) TCGA-CR-6488-01 22 17578691 17578691 C T IL17RA Silent p.T56T 0.19 TCGA-CR-6488-01 22 45601760 45601760 G A KIAA0930 Missense_Mutation p.R89W 0.16 deleterious(0.04) probably_damaging(0.974) TCGA-CR-6488-01 2 219755048 219755048 C T WNT10A Missense_Mutation p.A240V 0.16 deleterious(0) possibly_damaging(0.687) TCGA-CR-6488-01 2 234590879 234590879 C T UGT1A7 Missense_Mutation p.T99M 0.05 tolerated(0.11) possibly_damaging(0.601) TCGA-CR-6488-01 3 50145726 50145726 C T RBM5 Missense_Mutation p.S394L 0.15 tolerated(0.2) benign(0.011) TCGA-CR-6488-01 4 113353310 113353310 C T ALPK1 Silent p.H869H 0.35 TCGA-CR-6488-01 4 139966007 139966007 A C CCRN4L Silent p.L225L 0.33 TCGA-CR-6488-01 5 140741082 140741082 C T PCDHGB2 Silent p.H460H 0.28 TCGA-CR-6488-01 5 141316762 141316762 G T KIAA0141 Splice_Site p.X384_splice 0.14 TCGA-CR-6488-01 5 7832094 7832094 G A C5orf49 Missense_Mutation p.R105C 0.05 deleterious(0) probably_damaging(0.97) TCGA-CR-6488-01 5 83402601 83402601 G T EDIL3 Missense_Mutation p.Q173K 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-CR-6488-01 6 155458480 155458480 G A TIAM2 Missense_Mutation p.R455Q 0.05 tolerated(0.18) benign(0.02) TCGA-CR-6488-01 6 41566645 41566645 G A FOXP4 Missense_Mutation p.E672K 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-CR-6488-01 6 74440235 74440235 C T CD109 Missense_Mutation p.R149C 0.07 deleterious(0) probably_damaging(1) TCGA-CR-6488-01 7 123101543 123101543 A T IQUB Nonsense_Mutation p.C625* 0.14 TCGA-CR-6488-01 7 154684560 154684560 C T DPP6 3'UTR 0.13 TCGA-CR-6488-01 7 44612540 44612540 C T DDX56 Missense_Mutation p.R111Q 0.30 tolerated(0.07) benign(0.362) TCGA-CR-6488-01 7 53103492 53103492 C T POM121L12 Missense_Mutation p.T43M 0.09 deleterious(0.03) benign(0.154) TCGA-CR-6488-01 X 118893450 118893450 G A SOWAHD Missense_Mutation p.A274T 0.15 tolerated(0.34) benign(0.008) TCGA-CR-6488-01 X 18972425 18972425 G A PHKA2 Missense_Mutation p.R62C 0.19 deleterious(0) probably_damaging(0.993) TCGA-CR-6488-01 X 26157441 26157441 G A MAGEB18 Silent p.S113S 0.40 TCGA-CR-6488-01 X 35974175 35974175 T G CXorf22 Missense_Mutation p.C424W 0.08 deleterious(0) probably_damaging(1) TCGA-CR-6488-01 X 65413378 65413378 C T HEPH Nonsense_Mutation p.R477* 0.32 TCGA-CR-6491-01 10 100503694 100503694 G A HPSE2 Silent p.L244L 0.29 TCGA-CR-6491-01 10 11994186 11994186 A G UPF2 Silent p.D971D 0.40 TCGA-CR-6491-01 10 12238301 12238301 A T CDC123 Silent p.R19R 0.33 TCGA-CR-6491-01 10 127677183 127677183 G A FANK1 Silent p.L85L 0.04 TCGA-CR-6491-01 10 22699991 22699991 T A SPAG6 Missense_Mutation p.L449H 0.42 tolerated(0.18) benign(0.031) TCGA-CR-6491-01 10 28872436 28872436 T G WAC Splice_Site p.X127_splice 0.36 TCGA-CR-6491-01 10 60027245 60027245 G C IPMK Missense_Mutation p.L43V 0.42 deleterious_low_confidence(0.01) probably_damaging(0.934) TCGA-CR-6491-01 10 86237392 86237392 A G CCSER2 Missense_Mutation p.Y766C 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-CR-6491-01 10 92508650 92508650 C A HTR7 Missense_Mutation p.G414V 0.05 deleterious(0.01) probably_damaging(0.951) TCGA-CR-6491-01 10 99123620 99123620 G A RRP12 Silent p.I1186I 0.04 TCGA-CR-6491-01 11 10825924 10825924 C A EIF4G2 Silent p.L131L 0.33 TCGA-CR-6491-01 11 1261590 1261590 C T MUC5B Missense_Mutation p.P1319S 0.34 unknown(0) TCGA-CR-6491-01 11 40137567 40137567 T A LRRC4C Missense_Mutation p.K92N 0.25 tolerated(0.22) benign(0.339) TCGA-CR-6491-01 11 7081273 7081273 A T NLRP14 Missense_Mutation p.S928C 0.34 tolerated(0.1) benign(0.014) TCGA-CR-6491-01 12 111948230 111948230 G T ATXN2 Missense_Mutation p.A732D 0.05 probably_damaging(0.999) TCGA-CR-6491-01 12 113354483 113354483 A G OAS1 Missense_Mutation p.Y275C 0.45 tolerated(0.14) possibly_damaging(0.776) TCGA-CR-6491-01 12 129360459 129360459 G A GLT1D1 Silent p.R23R 0.36 TCGA-CR-6491-01 12 132446187 132446187 C A EP400 Missense_Mutation p.N341K 0.36 unknown(0) TCGA-CR-6491-01 12 336790 336790 G A SLC6A13 Silent p.I292I 0.11 TCGA-CR-6491-01 12 51773260 51773260 G A GALNT6 Silent p.F102F 0.04 TCGA-CR-6491-01 12 57113764 57113764 T C NACA Missense_Mutation p.N517S 0.32 tolerated_low_confidence(1) benign(0) TCGA-CR-6491-01 12 57919712 57919712 A T MBD6 Missense_Mutation p.S321C 0.37 deleterious_low_confidence(0) unknown(0) TCGA-CR-6491-01 12 6666180 6666180 G C NOP2 Missense_Mutation p.N839K 0.37 deleterious_low_confidence(0.02) benign(0.055) TCGA-CR-6491-01 12 7086775 7086775 A T LPCAT3 Silent p.V391V 0.42 TCGA-CR-6491-01 12 81732956 81732956 T G PPFIA2 Intron 0.30 TCGA-CR-6491-01 13 101287320 101287320 C T TMTC4 Silent p.L444L 0.38 TCGA-CR-6491-01 13 114152804 114152804 A - TMCO3 Frame_Shift_Del p.I198* 0.26 TCGA-CR-6491-01 13 49762701 49762701 G C FNDC3A Missense_Mutation p.D626H 0.04 deleterious(0.01) probably_damaging(0.983) TCGA-CR-6491-01 13 52536026 52536026 C T ATP7B Silent p.L631L 0.22 TCGA-CR-6491-01 13 88329424 88329424 C T SLITRK5 Missense_Mutation p.A594V 0.15 deleterious(0) benign(0.058) TCGA-CR-6491-01 14 24896977 24896977 C T CBLN3 3'UTR 0.61 TCGA-CR-6491-01 14 36103939 36103939 C A RALGAPA1 Missense_Mutation p.A1440S 0.12 tolerated(1) benign(0.036) TCGA-CR-6491-01 14 53177865 53177865 T A PSMC6 Missense_Mutation p.M116K 0.62 tolerated(0.33) benign(0.013) TCGA-CR-6491-01 14 77257651 77257652 - GGCT ANGEL1 Frame_Shift_Ins p.F561Cfs*50 0.47 TCGA-CR-6491-01 14 92471192 92471192 G C TRIP11 Missense_Mutation p.T1043S 0.41 tolerated(0.29) probably_damaging(0.94) TCGA-CR-6491-01 15 49083442 49083442 C T CEP152 Missense_Mutation p.E322K 0.27 deleterious(0) probably_damaging(0.994) TCGA-CR-6491-01 15 53889439 53889439 C T WDR72 Silent p.A995A 0.06 TCGA-CR-6491-01 15 86201776 86201776 G T AKAP13 Intron 0.05 TCGA-CR-6491-01 16 2030459 2030459 C T NOXO1 Missense_Mutation p.A109T 0.33 tolerated(0.31) benign(0.039) TCGA-CR-6491-01 16 20781491 20781491 C T ACSM3 Silent p.S45S 0.38 TCGA-CR-6491-01 16 20927015 20927015 G A LYRM1 Silent p.T46T 0.38 TCGA-CR-6491-01 16 27476145 27476145 G A GTF3C1 Nonsense_Mutation p.Q1790* 0.35 TCGA-CR-6491-01 16 3100445 3100445 G A MMP25 Missense_Mutation p.G187R 0.16 deleterious(0) probably_damaging(1) TCGA-CR-6491-01 16 75564112 75564112 G A CHST5 Silent p.A57A 0.35 TCGA-CR-6491-01 17 11648369 11648369 A T DNAH9 Nonsense_Mutation p.K2123* 0.34 TCGA-CR-6491-01 17 28808253 28808253 A T GOSR1 Missense_Mutation p.T42S 0.36 tolerated(0.95) benign(0) TCGA-CR-6491-01 17 33445520 33445520 C A RAD51D Intron 0.12 TCGA-CR-6491-01 17 33521249 33521249 G A SLC35G3 Silent p.R26R 0.41 TCGA-CR-6491-01 17 35656257 35656257 T A ACACA Intron 0.18 TCGA-CR-6491-01 17 36047267 36047267 G A HNF1B 3'UTR 0.31 TCGA-CR-6491-01 17 3627636 3627636 C T GSG2 Missense_Mutation p.P136L 0.38 tolerated_low_confidence(0.09) benign(0.03) TCGA-CR-6491-01 17 37008939 37008939 C T RPL23 Silent p.R48R 0.43 TCGA-CR-6491-01 17 43227082 43227082 G A HEXIM1 Silent p.K175K 0.32 TCGA-CR-6491-01 17 61950041 61950041 A G CSH2 Missense_Mutation p.F118L 0.27 tolerated(0.56) benign(0.005) TCGA-CR-6491-01 17 61950043 61950043 C T CSH2 Missense_Mutation p.R117Q 0.26 tolerated(1) benign(0.004) TCGA-CR-6491-01 17 7577572 7577572 T C TP53 Missense_Mutation p.M237V 0.36 deleterious(0) probably_damaging(0.995) TCGA-CR-6491-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.30 deleterious(0) probably_damaging(1) TCGA-CR-6491-01 17 8170154 8170154 C G PFAS Missense_Mutation p.R969G 0.36 tolerated(0.31) benign(0.006) TCGA-CR-6491-01 18 33706965 33706965 C T SLC39A6 Silent p.A2A 0.32 TCGA-CR-6491-01 19 10127887 10127887 G A RDH8 Silent p.V106V 0.32 TCGA-CR-6491-01 19 11942884 11942884 A G ZNF440 Missense_Mutation p.Y298C 0.26 tolerated(0.06) probably_damaging(0.95) TCGA-CR-6491-01 19 30496290 30496290 C T URI1 Silent p.D130D 0.23 TCGA-CR-6491-01 19 37643886 37643886 T C ZNF585A Silent p.K250K 0.39 TCGA-CR-6491-01 19 37903627 37903627 G C ZNF569 Missense_Mutation p.Q645E 0.05 tolerated(0.64) probably_damaging(0.975) TCGA-CR-6491-01 19 40698536 40698536 G A MAP3K10 Missense_Mutation p.A200T 0.50 deleterious(0) probably_damaging(0.999) TCGA-CR-6491-01 19 41198104 41198104 T A ADCK4 Nonsense_Mutation p.K491* 0.38 TCGA-CR-6491-01 19 41198105 41198105 G A ADCK4 Silent p.R490R 0.38 TCGA-CR-6491-01 19 42720875 42720875 G A DEDD2 Silent p.R95R 0.41 TCGA-CR-6491-01 19 47996260 47996260 C T NAPA Silent p.A173A 0.06 TCGA-CR-6491-01 19 51628589 51628589 C T SIGLEC9 Missense_Mutation p.R120C 0.27 deleterious(0) possibly_damaging(0.838) TCGA-CR-6491-01 19 58117075 58117075 A G ZNF530 Missense_Mutation p.D61G 0.39 tolerated(0.06) benign(0.051) TCGA-CR-6491-01 1 12062113 12062113 G A MFN2 Silent p.A371A 0.34 TCGA-CR-6491-01 1 155889790 155889791 - A KIAA0907 Intron 0.18 TCGA-CR-6491-01 1 156670775 156670775 T A CRABP2 Missense_Mutation p.E47V 0.41 deleterious(0) benign(0.077) TCGA-CR-6491-01 1 160312934 160312934 G A COPA Silent p.S9S 0.05 TCGA-CR-6491-01 1 16355704 16355704 C T CLCNKA Silent p.P379P 0.08 TCGA-CR-6491-01 1 171621793 171621793 G A MYOC 5'UTR 0.40 TCGA-CR-6491-01 1 173961928 173961928 C A RC3H1 Missense_Mutation p.V66L 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-CR-6491-01 1 180010837 180010837 G A CEP350 Missense_Mutation p.R1421Q 0.29 benign(0.006) TCGA-CR-6491-01 1 19447699 19447699 T A UBR4 Missense_Mutation p.K3375N 0.26 benign(0.057) TCGA-CR-6491-01 1 201022675 201022675 C T CACNA1S Missense_Mutation p.R1236H 0.05 deleterious(0) probably_damaging(0.988) TCGA-CR-6491-01 1 20971032 20971032 C T PINK1 Missense_Mutation p.R276W 0.06 deleterious(0) probably_damaging(0.995) TCGA-CR-6491-01 1 39920720 39920720 C A MACF1 Missense_Mutation p.P4950Q 0.38 benign(0.382) TCGA-CR-6491-01 1 40944997 40944997 C T ZFP69 5'UTR 0.28 TCGA-CR-6491-01 1 44595384 44595384 C T KLF17 Silent p.F147F 0.09 TCGA-CR-6491-01 1 46651243 46651243 G A TSPAN1 3'UTR 0.10 TCGA-CR-6491-01 1 61920976 61920976 C T NFIA Missense_Mutation p.S550F 0.05 deleterious_low_confidence(0) benign(0.196) TCGA-CR-6491-01 1 6314150 6314150 G A GPR153 Silent p.S138S 0.32 TCGA-CR-6491-01 1 6646822 6646822 C G ZBTB48 Missense_Mutation p.S371C 0.19 deleterious(0.01) possibly_damaging(0.88) TCGA-CR-6491-01 1 75072531 75072531 C A C1orf173 Nonsense_Mutation p.E415* 0.05 TCGA-CR-6491-01 20 2795826 2795826 T C C20orf141 5'UTR 0.33 TCGA-CR-6491-01 20 57428562 57428562 T A GNAS Missense_Mutation p.L81H 0.12 deleterious_low_confidence(0) unknown(0) TCGA-CR-6491-01 21 41385184 41385184 C T DSCAM Missense_Mutation p.R1939H 0.33 deleterious_low_confidence(0.02) benign(0.39) TCGA-CR-6491-01 21 47532166 47532166 G A COL6A2 Missense_Mutation p.R130H 0.38 deleterious(0) benign(0.048) TCGA-CR-6491-01 22 23523321 23523321 C T BCR Silent p.Y58Y 0.27 TCGA-CR-6491-01 22 46748195 46748195 T C TRMU Missense_Mutation p.I247T 0.39 deleterious(0) possibly_damaging(0.555) TCGA-CR-6491-01 2 153494181 153494182 - A FMNL2 Frame_Shift_Ins p.Y981Ifs*2 0.30 TCGA-CR-6491-01 2 175779816 175779816 C T CHN1 Missense_Mutation p.R77Q 0.15 tolerated(0.07) benign(0.012) TCGA-CR-6491-01 2 182403829 182403829 C T CERKL Missense_Mutation p.V536I 0.39 tolerated(0.53) benign(0.339) TCGA-CR-6491-01 2 189434779 189434779 A G GULP1 Missense_Mutation p.M181V 0.36 tolerated(0.35) benign(0) TCGA-CR-6491-01 2 200173524 200173524 G A SATB2 Missense_Mutation p.R567C 0.21 deleterious(0) possibly_damaging(0.854) TCGA-CR-6491-01 2 216284069 216284069 A T FN1 Missense_Mutation p.I572N 0.30 deleterious(0) probably_damaging(0.945) TCGA-CR-6491-01 2 219540848 219540848 C T STK36 Silent p.Y177Y 0.05 TCGA-CR-6491-01 2 234621836 234621836 A G UGT1A5 Missense_Mutation p.M67V 0.32 tolerated(0.3) benign(0.002) TCGA-CR-6491-01 2 238303780 238303780 T A COL6A3 Missense_Mutation p.E53D 0.38 benign(0.123) TCGA-CR-6491-01 2 26700047 26700047 G A OTOF Missense_Mutation p.A839V 0.13 tolerated(0.88) benign(0.012) TCGA-CR-6491-01 2 29092443 29092443 A G TRMT61B Splice_Site p.X233_splice 0.32 TCGA-CR-6491-01 2 37586939 37586939 G A QPCT Missense_Mutation p.V162M 0.27 deleterious(0) probably_damaging(1) TCGA-CR-6491-01 2 60688292 60688292 G C BCL11A Missense_Mutation p.C585W 0.27 deleterious(0.04) possibly_damaging(0.795) TCGA-CR-6491-01 2 74441326 74441326 G A MTHFD2 Missense_Mutation p.R337Q 0.35 tolerated_low_confidence(0.45) benign(0.001) TCGA-CR-6491-01 2 90229437 90229437 G T IGKV1D-42 Missense_Mutation p.G86V 0.42 deleterious(0) probably_damaging(1) TCGA-CR-6491-01 2 90229438 90229438 C T IGKV1D-42 Silent p.G86G 0.41 TCGA-CR-6491-01 2 90260066 90260066 T - IGKV1D-8 Frame_Shift_Del p.W57Gfs*13 0.28 TCGA-CR-6491-01 3 13377046 13377046 T C NUP210 Missense_Mutation p.T1251A 0.19 deleterious(0.01) benign(0.175) TCGA-CR-6491-01 3 135870380 135870380 G C MSL2 Missense_Mutation p.P448R 0.28 deleterious(0) probably_damaging(0.999) TCGA-CR-6491-01 3 146251283 146251283 G C PLSCR1 Missense_Mutation p.P23R 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-CR-6491-01 3 148458873 148458873 T C AGTR1 Silent p.D17D 0.46 TCGA-CR-6491-01 3 151166715 151166715 T C IGSF10 Missense_Mutation p.I352V 0.33 tolerated(0.44) benign(0.027) TCGA-CR-6491-01 3 173998698 173998698 G T NLGN1 Missense_Mutation p.A693S 0.41 deleterious(0.02) probably_damaging(0.987) TCGA-CR-6491-01 3 39227515 39227530 CCATCCTGAATTGTCA - XIRP1 Frame_Shift_Del p.V1136Afs*8 0.46 TCGA-CR-6491-01 3 50326350 50326350 C A IFRD2 Missense_Mutation p.D366Y 0.58 tolerated(0.13) probably_damaging(0.98) TCGA-CR-6491-01 3 58104676 58104676 G T FLNB Silent p.P941P 0.12 TCGA-CR-6491-01 3 58111419 58111419 G T FLNB Missense_Mutation p.G1337V 0.51 deleterious(0) possibly_damaging(0.871) TCGA-CR-6491-01 4 120221571 120221571 G A C4orf3 Silent p.P173P 0.39 TCGA-CR-6491-01 4 120981206 120981206 T C MAD2L1 3'UTR 0.29 TCGA-CR-6491-01 4 3101073 3101073 G A HTT Silent p.E140E 0.06 TCGA-CR-6491-01 4 38830188 38830188 T C TLR6 Missense_Mutation p.T303A 0.48 tolerated(0.51) benign(0.001) TCGA-CR-6491-01 4 55594178 55594178 G T KIT Silent p.P627P 0.42 TCGA-CR-6491-01 4 66467472 66467472 G C EPHA5 Missense_Mutation p.S266C 0.41 deleterious(0) probably_damaging(0.987) TCGA-CR-6491-01 4 72425949 72425949 G T SLC4A4 Missense_Mutation p.S1026I 0.39 tolerated(0.08) benign(0.158) TCGA-CR-6491-01 4 96141148 96141148 C T UNC5C Missense_Mutation p.A430T 0.29 tolerated(1) benign(0.004) TCGA-CR-6491-01 5 106723440 106723440 A G EFNA5 Missense_Mutation p.C151R 0.06 deleterious(0) probably_damaging(1) TCGA-CR-6491-01 5 1219624 1219624 C T SLC6A19 Silent p.L461L 0.40 TCGA-CR-6491-01 5 146778660 146778660 G T DPYSL3 Silent p.A536A 0.09 TCGA-CR-6491-01 5 179751886 179751886 G T GFPT2 Missense_Mutation p.S202R 0.33 deleterious(0) probably_damaging(0.989) TCGA-CR-6491-01 5 179751887 179751887 C A GFPT2 Missense_Mutation p.S202I 0.36 deleterious(0) probably_damaging(0.986) TCGA-CR-6491-01 5 44815396 44815396 A C MRPS30 3'UTR 0.33 TCGA-CR-6491-01 5 65458371 65458371 C T SREK1 Missense_Mutation p.P236S 0.10 tolerated(0.12) benign(0.054) TCGA-CR-6491-01 6 10410525 10410526 - G TFAP2A Frame_Shift_Ins p.Q30Pfs*139 0.27 TCGA-CR-6491-01 6 152639352 152639352 A T SYNE1 Nonsense_Mutation p.L5479* 0.59 TCGA-CR-6491-01 6 18130879 18130879 T C TPMT 3'UTR 0.31 TCGA-CR-6491-01 6 27833150 27833150 G C HIST1H2AL Missense_Mutation p.K6N 0.07 deleterious_low_confidence(0) benign(0.067) TCGA-CR-6491-01 6 33400552 33400552 C T SYNGAP1 Silent p.L160L 0.38 TCGA-CR-6491-01 6 36930912 36930912 C T PI16 Missense_Mutation p.P265L 0.08 deleterious(0) probably_damaging(0.96) TCGA-CR-6491-01 6 43406408 43406408 C T ABCC10 Silent p.L668L 0.41 TCGA-CR-6491-01 6 73904678 73904678 C T KCNQ5 Silent p.V799V 0.17 TCGA-CR-6491-01 6 76602328 76602328 C T MYO6 Missense_Mutation p.R1010W 0.55 deleterious(0.02) probably_damaging(0.992) TCGA-CR-6491-01 7 115892374 115892374 G A TES Silent p.L307L 0.12 TCGA-CR-6491-01 7 121616905 121616905 G T PTPRZ1 Missense_Mutation p.G207W 0.11 deleterious(0) probably_damaging(0.999) TCGA-CR-6491-01 7 151874275 151874275 C G KMT2C Missense_Mutation p.D2755H 0.12 probably_damaging(0.999) TCGA-CR-6491-01 7 18669037 18669037 C A HDAC9 Missense_Mutation p.S243R 0.40 deleterious(0) possibly_damaging(0.733) TCGA-CR-6491-01 7 21627788 21627788 G A DNAH11 Missense_Mutation p.C606Y 0.12 probably_damaging(0.992) TCGA-CR-6491-01 7 43918683 43918683 C A URGCP Missense_Mutation p.A127S 0.36 tolerated(0.75) benign(0.02) TCGA-CR-6491-01 7 44187278 44187278 G A GCK Silent p.D279D 0.49 TCGA-CR-6491-01 7 57522865 57522865 A C ZNF716 Missense_Mutation p.K85Q 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-CR-6491-01 7 72856543 72856543 G A BAZ1B Nonsense_Mutation p.R1479* 0.04 TCGA-CR-6491-01 7 8125840 8125840 C T GLCCI1 Missense_Mutation p.S439L 0.05 tolerated(0.32) benign(0.173) TCGA-CR-6491-01 7 99264261 99264261 G A CYP3A5 Missense_Mutation p.R162W 0.05 deleterious(0) benign(0.026) TCGA-CR-6491-01 8 110476920 110476920 G T PKHD1L1 Missense_Mutation p.G2620V 0.46 deleterious(0) probably_damaging(0.999) TCGA-CR-6491-01 8 118552171 118552171 G A MED30 Missense_Mutation p.R164Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-CR-6491-01 8 133150233 133150233 T A KCNQ3 Missense_Mutation p.K533N 0.33 deleterious(0) possibly_damaging(0.816) TCGA-CR-6491-01 8 139601575 139601575 G A COL22A1 Missense_Mutation p.P1601L 0.17 unknown(0) TCGA-CR-6491-01 8 22460089 22460089 A G C8orf58 Missense_Mutation p.N307D 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CR-6491-01 8 27401308 27401308 G A EPHX2 Missense_Mutation p.V498M 0.09 deleterious(0) probably_damaging(0.916) TCGA-CR-6491-01 8 27964292 27964292 T C ELP3 Silent p.N107N 0.33 TCGA-CR-6491-01 8 33364791 33364792 - A TTI2 Frame_Shift_Ins p.A295Cfs*46 0.25 TCGA-CR-6491-01 9 100899882 100899882 T A CORO2A Missense_Mutation p.E97V 0.29 tolerated(1) benign(0.006) TCGA-CR-6491-01 9 125315629 125315629 C T OR1N2 Missense_Mutation p.L61F 0.07 deleterious(0.04) benign(0.303) TCGA-CR-6491-01 9 128723127 128723127 C T PBX3 Silent p.S336S 0.12 TCGA-CR-6491-01 9 21350758 21350758 T C IFNA6 Silent p.Q43Q 0.68 TCGA-CR-6491-01 9 21968243 21968243 T C CDKN2A Splice_Site 0.56 TCGA-CR-6491-01 9 37486777 37486777 C T POLR1E Missense_Mutation p.P52S 0.11 deleterious(0.01) probably_damaging(0.948) TCGA-CR-6491-01 X 122765598 122765598 G C THOC2 Missense_Mutation p.H808D 0.03 deleterious(0) possibly_damaging(0.603) TCGA-CR-6491-01 X 153248203 153248203 G A TMEM187 Silent p.K230K 0.71 TCGA-CR-6491-01 X 70463731 70463731 C T ZMYM3 Missense_Mutation p.G1127D 0.10 deleterious(0) probably_damaging(0.999) TCGA-CR-6492-01 10 101657950 101657950 T A DNMBP Missense_Mutation p.N938I 0.13 deleterious(0) possibly_damaging(0.646) TCGA-CR-6492-01 11 102401427 102401427 C T MMP7 Missense_Mutation p.R2Q 0.10 tolerated(1) benign(0) TCGA-CR-6492-01 11 117335745 117335745 C T DSCAML1 Missense_Mutation p.A1120T 0.06 tolerated(1) benign(0.103) TCGA-CR-6492-01 11 43513699 43513699 G T TTC17 Missense_Mutation p.V1094F 0.09 deleterious(0) possibly_damaging(0.727) TCGA-CR-6492-01 11 58207492 58207492 C G OR5B12 Missense_Mutation p.E45Q 0.09 tolerated_low_confidence(0.06) benign(0.004) TCGA-CR-6492-01 11 64802351 64802351 C T SNX15 Nonsense_Mutation p.R97* 0.08 TCGA-CR-6492-01 12 110574583 110574583 A G IFT81 Silent p.L233L 0.12 TCGA-CR-6492-01 12 47472579 47472579 C T AMIGO2 Silent p.L69L 0.09 TCGA-CR-6492-01 12 48238570 48238570 T C VDR Missense_Mutation p.T465A 0.11 deleterious(0) possibly_damaging(0.877) TCGA-CR-6492-01 12 53455639 53455639 G A TENC1 Silent p.L1173L 0.08 TCGA-CR-6492-01 12 53609131 53609131 G A RARG Missense_Mutation p.R141C 0.08 deleterious(0.05) possibly_damaging(0.479) TCGA-CR-6492-01 13 114240101 114240101 T G TFDP1 5'UTR 0.09 TCGA-CR-6492-01 14 100728656 100728656 T C YY1 Missense_Mutation p.I232T 0.07 tolerated(0.57) benign(0.017) TCGA-CR-6492-01 14 33292535 33292535 C G AKAP6 Missense_Mutation p.P1839R 0.05 tolerated(0.12) benign(0.358) TCGA-CR-6492-01 14 70633915 70633915 C G SLC8A3 Missense_Mutation p.E409Q 0.12 deleterious(0) probably_damaging(1) TCGA-CR-6492-01 15 26026297 26026297 C T ATP10A Missense_Mutation p.E175K 0.08 deleterious(0.01) probably_damaging(0.924) TCGA-CR-6492-01 15 62942335 62942335 G A TLN2 Nonsense_Mutation p.W63* 0.07 TCGA-CR-6492-01 16 25255343 25255343 G C ZKSCAN2 Missense_Mutation p.L582V 0.10 deleterious(0) probably_damaging(0.999) TCGA-CR-6492-01 16 31075507 31075507 C G ZNF668 Missense_Mutation p.A115P 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-CR-6492-01 16 3736066 3736066 G A TRAP1 Silent p.D134D 0.06 TCGA-CR-6492-01 17 10209914 10209914 T C MYH13 Silent p.E1776E 0.08 TCGA-CR-6492-01 17 18882983 18882983 G T FAM83G Missense_Mutation p.L232I 0.07 tolerated(0.11) probably_damaging(0.991) TCGA-CR-6492-01 19 10597384 10597384 C G KEAP1 Missense_Mutation p.A607P 0.06 deleterious(0) probably_damaging(0.99) TCGA-CR-6492-01 19 12429679 12429679 T A ZNF563 Missense_Mutation p.H387L 0.08 deleterious(0) probably_damaging(1) TCGA-CR-6492-01 19 13065144 13065144 C T GADD45GIP1 Missense_Mutation p.E183K 0.05 deleterious(0.01) benign(0.041) TCGA-CR-6492-01 19 50412820 50412820 G A NUP62 Missense_Mutation p.A82V 0.09 deleterious(0.01) benign(0.196) TCGA-CR-6492-01 19 6829898 6829898 A T VAV1 Missense_Mutation p.D456V 0.06 deleterious(0) probably_damaging(1) TCGA-CR-6492-01 1 109806318 109806318 C T CELSR2 Silent p.L1640L 0.05 TCGA-CR-6492-01 1 145765384 145765384 T C GPR89A Silent p.L382L 0.11 TCGA-CR-6492-01 1 16260533 16260533 G A SPEN Missense_Mutation p.E2600K 0.10 probably_damaging(0.991) TCGA-CR-6492-01 1 197887087 197887087 C T LHX9 Missense_Mutation p.A45V 0.08 tolerated_low_confidence(0.14) benign(0.002) TCGA-CR-6492-01 1 198668699 198668699 C T PTPRC Missense_Mutation p.S102L 0.05 tolerated(0.26) benign(0.002) TCGA-CR-6492-01 1 200587425 200587425 T C KIF14 Missense_Mutation p.M143V 0.08 tolerated(0.29) benign(0) TCGA-CR-6492-01 1 231061288 231061288 G A TTC13 Silent p.F521F 0.09 TCGA-CR-6492-01 21 40568320 40568320 A G BRWD1 Intron 0.06 TCGA-CR-6492-01 21 46193489 46193489 G A UBE2G2 Silent p.L120L 0.10 TCGA-CR-6492-01 21 46875807 46875807 C T COL18A1 Silent p.I121I 0.09 TCGA-CR-6492-01 21 47700039 47700039 T A MCM3AP Missense_Mutation p.K512I 0.06 deleterious(0) probably_damaging(0.998) TCGA-CR-6492-01 2 10186310 10186310 G A KLF11 Missense_Mutation p.E26K 0.09 tolerated(0.13) possibly_damaging(0.706) TCGA-CR-6492-01 2 203420620 203420620 T G BMPR2 Silent p.P744P 0.06 TCGA-CR-6492-01 3 140277533 140277533 G C CLSTN2 Silent p.V625V 0.07 TCGA-CR-6492-01 3 169835109 169835109 T C PHC3 Missense_Mutation p.I700V 0.14 tolerated(0.6) benign(0) TCGA-CR-6492-01 3 189526137 189526137 A G TP63 Missense_Mutation p.Y134C 0.15 deleterious(0) probably_damaging(0.997) TCGA-CR-6492-01 3 369921 369921 G A CHL1 Missense_Mutation p.G90E 0.07 deleterious(0) probably_damaging(1) TCGA-CR-6492-01 3 97598838 97598838 T A CRYBG3 Missense_Mutation p.Y352N 0.13 deleterious(0) possibly_damaging(0.73) TCGA-CR-6492-01 4 187530345 187530345 G A FAT1 Nonsense_Mutation p.R3400* 0.20 TCGA-CR-6492-01 4 187542660 187542660 G A FAT1 Nonsense_Mutation p.Q1694* 0.12 TCGA-CR-6492-01 4 189022315 189022315 C G TRIML2 Missense_Mutation p.Q75H 0.12 tolerated(0.37) benign(0.002) TCGA-CR-6492-01 4 5750014 5750014 C T EVC Missense_Mutation p.S360F 0.07 tolerated(0.09) possibly_damaging(0.894) TCGA-CR-6492-01 4 8007050 8007050 T C ABLIM2 Intron 0.07 TCGA-CR-6492-01 5 115327924 115327924 G A AQPEP Missense_Mutation p.E404K 0.05 tolerated(0.38) benign(0.219) TCGA-CR-6492-01 5 154393632 154393632 G A KIF4B Silent p.P71P 0.11 TCGA-CR-6492-01 5 171485 171485 G A PLEKHG4B Missense_Mutation p.A970T 0.15 deleterious(0) probably_damaging(0.997) TCGA-CR-6492-01 5 67589628 67589628 A T PIK3R1 Missense_Mutation p.D464V 0.15 deleterious(0) possibly_damaging(0.789) TCGA-CR-6492-01 5 82948498 82948498 G T HAPLN1 Silent p.T82T 0.06 TCGA-CR-6492-01 5 86659189 86659189 T A RASA1 Nonsense_Mutation p.L493* 0.22 TCGA-CR-6492-01 6 106553695 106553695 A G PRDM1 Missense_Mutation p.R554G 0.07 deleterious(0.01) possibly_damaging(0.776) TCGA-CR-6492-01 6 121600334 121600334 T C TBC1D32 Missense_Mutation p.I556V 0.08 tolerated(0.15) benign(0.113) TCGA-CR-6492-01 6 24523069 24523069 C T ALDH5A1 Silent p.A376A 0.09 TCGA-CR-6492-01 6 27368887 27368887 G C ZNF391 Missense_Mutation p.E246D 0.06 deleterious(0.04) probably_damaging(0.957) TCGA-CR-6492-01 6 28327420 28327420 G A ZKSCAN3 Silent p.Q19Q 0.08 TCGA-CR-6492-01 6 43418618 43418618 C G DLK2 Missense_Mutation p.V271L 0.08 tolerated(0.67) benign(0.001) TCGA-CR-6492-01 7 138269634 138269634 G A TRIM24 Missense_Mutation p.D1031N 0.08 deleterious(0) possibly_damaging(0.723) TCGA-CR-6492-01 7 34888178 34888178 T C NPSR1 Missense_Mutation p.Y310H 0.05 tolerated(0.53) benign(0.005) TCGA-CR-6492-01 7 6063411 6063411 G C EIF2AK1 3'UTR 0.13 TCGA-CR-6492-01 9 127701010 127701010 T A GOLGA1 5'UTR 0.05 TCGA-CR-6492-01 9 139412242 139412242 A C NOTCH1 Missense_Mutation p.L468R 0.14 deleterious(0) probably_damaging(1) TCGA-CR-6492-01 9 139906446 139906446 G A ABCA2 Silent p.I1795I 0.07 TCGA-CR-6492-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.36 TCGA-CR-6492-01 9 32542338 32542338 G A TOPORS Missense_Mutation p.H729Y 0.06 tolerated_low_confidence(0.74) unknown(0) TCGA-CR-6492-01 X 153215722 153215722 G C HCFC1 Silent p.G1992G 0.18 TCGA-CR-6492-01 X 49032203 49032203 G T PRICKLE3 Nonsense_Mutation p.S556* 0.16 TCGA-CR-6493-01 10 16942822 16942822 G A CUBN Missense_Mutation p.P2738S 0.09 tolerated(1) benign(0.002) TCGA-CR-6493-01 11 840466 840466 G T POLR2L Missense_Mutation p.A37D 0.35 tolerated(0.32) possibly_damaging(0.549) TCGA-CR-6493-01 12 57988994 57988994 C T PIP4K2C Nonsense_Mutation p.Q120* 0.47 TCGA-CR-6493-01 12 8375146 8375146 G C FAM90A1 Missense_Mutation p.L223V 0.34 tolerated(0.53) benign(0.046) TCGA-CR-6493-01 13 23906082 23906082 A C SACS Missense_Mutation p.L3978R 0.22 probably_damaging(0.997) TCGA-CR-6493-01 14 106866589 106866589 C A IGHV3-38 Missense_Mutation p.W55C 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-CR-6493-01 14 23445688 23445688 A T AJUBA Missense_Mutation p.C406S 0.65 deleterious(0) possibly_damaging(0.849) TCGA-CR-6493-01 15 76633517 76633517 C G ISL2 Missense_Mutation p.P280A 0.34 deleterious(0.04) benign(0.323) TCGA-CR-6493-01 16 1991308 1991308 C T MSRB1 Missense_Mutation p.A52T 0.11 tolerated(0.27) benign(0.002) TCGA-CR-6493-01 16 50816274 50816274 A T CYLD Missense_Mutation p.T575S 0.35 deleterious(0) benign(0.414) TCGA-CR-6493-01 16 67680147 67680148 - CCTGGA RLTPR In_Frame_Ins p.L104_E105insDL 0.33 TCGA-CR-6493-01 17 7577594 7577595 AC - TP53 Frame_Shift_Del p.C229Yfs*10 0.28 TCGA-CR-6493-01 17 7578550 7578550 G T TP53 Missense_Mutation p.S127Y 0.39 deleterious(0) probably_damaging(1) TCGA-CR-6493-01 19 19162842 19162842 C T ARMC6 Missense_Mutation p.H231Y 0.13 deleterious(0.01) benign(0.075) TCGA-CR-6493-01 19 38991629 38991629 C T RYR1 Missense_Mutation p.T2538M 0.37 benign(0.144) TCGA-CR-6493-01 1 103461591 103461591 G A COL11A1 Missense_Mutation p.P750L 0.20 unknown(0) TCGA-CR-6493-01 1 154897618 154897618 C T PMVK Missense_Mutation p.R189H 0.37 tolerated(0.61) benign(0.001) TCGA-CR-6493-01 1 1650803 1650803 C G CDK11A Missense_Mutation p.E107Q 0.22 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-CR-6493-01 1 1669803 1669803 G T SLC35E2 Silent p.I181I 0.39 TCGA-CR-6493-01 1 169838196 169838196 A C SCYL3 Intron 0.21 TCGA-CR-6493-01 1 169838197 169838197 C A SCYL3 Intron 0.28 TCGA-CR-6493-01 1 181767512 181767512 G A CACNA1E Missense_Mutation p.V2162I 0.31 deleterious(0.02) possibly_damaging(0.796) TCGA-CR-6493-01 1 198711143 198711143 T C PTPRC Missense_Mutation p.V850A 0.15 deleterious(0) probably_damaging(0.992) TCGA-CR-6493-01 1 210111543 210111543 G A SYT14 5'UTR 0.73 TCGA-CR-6493-01 1 45206652 45206652 A C KIF2C Silent p.A46A 0.46 TCGA-CR-6493-01 20 29978363 29978363 G T DEFB119 5'Flank 0.17 TCGA-CR-6493-01 20 47244457 47244457 C T PREX1 Missense_Mutation p.R1604Q 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-CR-6493-01 20 61431001 61431001 C T MRGBP 3'UTR 0.35 TCGA-CR-6493-01 20 7864203 7864203 A - HAO1 3'UTR 0.50 TCGA-CR-6493-01 2 127958736 127958736 C T CYP27C1 Missense_Mutation p.R117Q 0.34 tolerated(0.74) benign(0.005) TCGA-CR-6493-01 2 33623487 33623487 T C LTBP1 Missense_Mutation p.C1681R 0.45 deleterious(0) probably_damaging(1) TCGA-CR-6493-01 2 90199155 90199155 G T IGKV1D-12 Missense_Mutation p.A106S 0.64 deleterious(0.01) possibly_damaging(0.606) TCGA-CR-6493-01 3 10005748 10005748 G C EMC3 3'UTR 0.69 TCGA-CR-6493-01 3 112993314 112993314 A G BOC Missense_Mutation p.R443G 0.47 tolerated(0.16) benign(0) TCGA-CR-6493-01 3 186295532 186295534 TAT - DNAJB11 In_Frame_Del p.I135del 0.31 TCGA-CR-6493-01 3 42676726 42676726 C G NKTR Missense_Mutation p.P344R 0.75 deleterious_low_confidence(0) unknown(0) TCGA-CR-6493-01 3 42680280 42680280 G T NKTR Missense_Mutation p.E1028D 0.68 tolerated_low_confidence(0.31) probably_damaging(0.935) TCGA-CR-6493-01 4 128812740 128812740 A G PLK4 Missense_Mutation p.I648V 0.34 tolerated(1) benign(0.002) TCGA-CR-6493-01 5 140559714 140559714 C T PCDHB8 Missense_Mutation p.S700L 0.78 deleterious_low_confidence(0.01) benign(0.059) TCGA-CR-6493-01 7 20825289 20825289 G A SP8 Silent p.H49H 0.33 TCGA-CR-6493-01 7 29944031 29944031 G T WIPF3 Intron 0.37 TCGA-CR-6493-01 7 87051469 87051469 C T ABCB4 Missense_Mutation p.G762R 0.15 deleterious(0) probably_damaging(0.995) TCGA-CR-6493-01 8 95802031 95802031 G A DPY19L4 Missense_Mutation p.E689K 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-CR-6493-01 9 114886703 114886703 G A SUSD1 Silent p.G240G 0.66 TCGA-CR-6493-01 9 125288894 125288894 G A OR1N1 Nonsense_Mutation p.R227* 0.58 TCGA-CR-6493-01 9 139273678 139273678 C A SNAPC4 Silent p.A867A 0.15 TCGA-CR-7364-01 10 100012126 100012126 G A LOXL4 Silent p.D645D 0.29 TCGA-CR-7364-01 10 102684054 102684054 G A FAM178A Silent p.K432K 0.26 TCGA-CR-7364-01 10 105948147 105948147 T C WDR96 Missense_Mutation p.Q523R 0.29 tolerated(0.08) possibly_damaging(0.749) TCGA-CR-7364-01 10 115381802 115381802 C A NRAP Missense_Mutation p.E865D 0.35 deleterious(0) possibly_damaging(0.639) TCGA-CR-7364-01 10 116975564 116975564 G A ATRNL1 Silent p.G486G 0.28 TCGA-CR-7364-01 10 124672281 124672281 T A FAM24A Silent p.A43A 0.30 TCGA-CR-7364-01 10 126715632 126715632 C G CTBP2 Missense_Mutation p.V233L 0.33 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-CR-7364-01 10 127411642 127411642 G A EDRF1 Missense_Mutation p.G108D 0.21 tolerated(0.26) probably_damaging(0.945) TCGA-CR-7364-01 10 132965138 132965138 T C TCERG1L Silent p.T289T 0.16 TCGA-CR-7364-01 10 135012588 135012588 G T KNDC1 Missense_Mutation p.S859I 0.35 tolerated(0.17) benign(0.26) TCGA-CR-7364-01 10 135024220 135024220 G T KNDC1 Silent p.T1300T 0.23 TCGA-CR-7364-01 10 15113820 15113820 T A OLAH Missense_Mutation p.L253H 0.23 deleterious(0) probably_damaging(0.997) TCGA-CR-7364-01 10 17127685 17127685 T A CUBN Missense_Mutation p.Q674L 0.23 tolerated(0.11) possibly_damaging(0.756) TCGA-CR-7364-01 10 27687958 27687958 C A PTCHD3 Silent p.L523L 0.20 TCGA-CR-7364-01 10 27702471 27702471 G A PTCHD3 Nonsense_Mutation p.Q237* 0.10 TCGA-CR-7364-01 10 48389293 48389293 G C RBP3 Missense_Mutation p.P529A 0.16 tolerated(0.4) possibly_damaging(0.822) TCGA-CR-7364-01 10 50315862 50315862 C A VSTM4 Missense_Mutation p.M78I 0.18 tolerated(0.25) possibly_damaging(0.761) TCGA-CR-7364-01 10 50315863 50315863 A T VSTM4 Missense_Mutation p.M78K 0.20 tolerated(0.17) benign(0.438) TCGA-CR-7364-01 10 50870701 50870701 G A CHAT Missense_Mutation p.G617E 0.28 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 10 50916545 50916545 T A C10orf53 Missense_Mutation p.V119E 0.26 deleterious_low_confidence(0) unknown(0) TCGA-CR-7364-01 10 50964873 50964873 G T OGDHL Missense_Mutation p.S108R 0.37 tolerated(0.41) benign(0.001) TCGA-CR-7364-01 10 51768720 51768720 G A AGAP6 Missense_Mutation p.G279S 0.20 tolerated(0.07) benign(0.109) TCGA-CR-7364-01 10 70962202 70962202 G A SUPV3L1 Missense_Mutation p.G509D 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 10 81372067 81372067 G T SFTPA1 Splice_Site p.X73_splice 0.27 TCGA-CR-7364-01 10 89264702 89264702 G T MINPP1 Silent p.R10R 0.20 TCGA-CR-7364-01 10 90768682 90768682 A G FAS Missense_Mutation p.N124S 0.28 deleterious(0) probably_damaging(0.992) TCGA-CR-7364-01 11 106579253 106579253 C A GUCY1A2 Missense_Mutation p.S690I 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 11 116797940 116797940 A T SIK3 Missense_Mutation p.I146K 0.29 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 11 121485640 121485640 G T SORL1 Missense_Mutation p.G1827V 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 11 121970551 121970552 - A MIR125B1 RNA 0.21 TCGA-CR-7364-01 11 122709301 122709301 G A CRTAM Splice_Site p.X16_splice 0.24 TCGA-CR-7364-01 11 123900617 123900617 C T OR10G8 Silent p.C96C 0.23 TCGA-CR-7364-01 11 130785267 130785267 C T SNX19 Missense_Mutation p.E190K 0.16 tolerated(0.6) benign(0.062) TCGA-CR-7364-01 11 132180115 132180115 G A NTM Silent p.K257K 0.28 TCGA-CR-7364-01 11 27379017 27379017 G C CCDC34 Missense_Mutation p.P144R 0.35 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 11 33037974 33037974 A G DEPDC7 Intron 0.30 TCGA-CR-7364-01 11 33094117 33094117 G A TCP11L1 Silent p.E475E 0.27 TCGA-CR-7364-01 11 34988233 34988233 G A PDHX Missense_Mutation p.E230K 0.35 tolerated(0.32) benign(0.008) TCGA-CR-7364-01 11 35463127 35463127 G C PAMR1 Missense_Mutation p.S329C 0.26 tolerated(0.08) possibly_damaging(0.669) TCGA-CR-7364-01 11 40137641 40137641 G C LRRC4C Missense_Mutation p.R68G 0.29 tolerated(0.35) benign(0.003) TCGA-CR-7364-01 11 47197400 47197400 A T ARFGAP2 Splice_Site p.X88_splice 0.23 TCGA-CR-7364-01 11 47311587 47311587 G T MADD Missense_Mutation p.D996Y 0.25 deleterious(0) possibly_damaging(0.691) TCGA-CR-7364-01 11 4976784 4976784 C A OR51A2 Nonsense_Mutation p.E54* 0.46 TCGA-CR-7364-01 11 5173083 5173083 G A OR52A1 Missense_Mutation p.H173Y 0.35 tolerated(0.09) benign(0.009) TCGA-CR-7364-01 11 5364443 5364443 T A OR51B5 Silent p.S104S 0.22 TCGA-CR-7364-01 11 5474910 5474910 C A OR51I2 Silent p.S64S 0.27 TCGA-CR-7364-01 11 55579097 55579097 G T OR5L1 Missense_Mutation p.S52I 0.26 deleterious(0.01) benign(0.01) TCGA-CR-7364-01 11 55653180 55653180 A T TRIM51 Silent p.I92I 0.17 TCGA-CR-7364-01 11 5566075 5566075 C T OR52H1 Missense_Mutation p.A227T 0.27 tolerated(0.66) benign(0.002) TCGA-CR-7364-01 11 56128025 56128025 G - OR8J1 Frame_Shift_Del p.G102Efs*11 0.24 TCGA-CR-7364-01 11 57559055 57559055 C G CTNND1 Silent p.R35R 0.23 TCGA-CR-7364-01 11 5757697 5757697 T A OR56B1 5'UTR 0.18 TCGA-CR-7364-01 11 57799217 57799217 C A OR6Q1 Missense_Mutation p.Q265K 0.26 deleterious(0.01) benign(0) TCGA-CR-7364-01 11 58972335 58972335 G A DTX4 Missense_Mutation p.A605T 0.24 tolerated(0.27) benign(0.161) TCGA-CR-7364-01 11 62297619 62297619 C G AHNAK Missense_Mutation p.D1424H 0.26 probably_damaging(0.94) TCGA-CR-7364-01 11 62393907 62393907 C T GANAB Missense_Mutation p.G864R 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 11 62607134 62607134 G T WDR74 5'UTR 0.21 TCGA-CR-7364-01 11 65360635 65360635 G C KCNK7 Silent p.T255T 0.23 TCGA-CR-7364-01 11 65421990 65421990 T A RELA Silent p.T505T 0.28 TCGA-CR-7364-01 11 67414349 67414349 C G ACY3 Missense_Mutation p.A56P 0.16 tolerated(0.13) benign(0.344) TCGA-CR-7364-01 11 67926430 67926430 C T SUV420H1 Silent p.L461L 0.19 TCGA-CR-7364-01 11 7949914 7949914 G T OR10A6 Missense_Mutation p.A99E 0.26 deleterious(0.01) possibly_damaging(0.563) TCGA-CR-7364-01 11 85977217 85977217 A T EED Silent p.A273A 0.20 TCGA-CR-7364-01 11 89402587 89402587 C T FOLH1B RNA 0.29 TCGA-CR-7364-01 11 93797618 93797618 C A HEPHL1 Silent p.T250T 0.32 TCGA-CR-7364-01 11 94040453 94040453 G A FOLR4 Nonsense_Mutation p.W150* 0.15 TCGA-CR-7364-01 12 100599500 100599500 T A ACTR6 Missense_Mutation p.L78H 0.27 deleterious(0) possibly_damaging(0.844) TCGA-CR-7364-01 12 103232972 103232972 G A PAH Missense_Mutation p.A447V 0.26 deleterious(0.04) possibly_damaging(0.66) TCGA-CR-7364-01 12 111655724 111655724 A T CUX2 Nonsense_Mutation p.K69* 0.24 TCGA-CR-7364-01 12 111758214 111758214 G T CUX2 Missense_Mutation p.A801S 0.26 tolerated(0.44) benign(0.133) TCGA-CR-7364-01 12 119583342 119583342 G A SRRM4 Missense_Mutation p.G310R 0.12 tolerated_low_confidence(0.95) possibly_damaging(0.833) TCGA-CR-7364-01 12 119592088 119592088 C A SRRM4 Silent p.R478R 0.14 TCGA-CR-7364-01 12 123352007 123352007 C T VPS37B Missense_Mutation p.A172T 0.24 deleterious(0.04) benign(0.08) TCGA-CR-7364-01 12 124846676 124846676 C G NCOR2 Missense_Mutation p.K1032N 0.31 probably_damaging(0.979) TCGA-CR-7364-01 12 124862866 124862866 G A NCOR2 Missense_Mutation p.A695V 0.22 unknown(0) TCGA-CR-7364-01 12 125834477 125834477 G T TMEM132B Missense_Mutation p.G178W 0.26 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 12 14018983 14018983 G A GRIN2B Missense_Mutation p.H54Y 0.16 tolerated(0.2) benign(0.035) TCGA-CR-7364-01 12 1895200 1895200 A G ADIPOR2 Missense_Mutation p.M375V 0.47 tolerated(0.63) benign(0.002) TCGA-CR-7364-01 12 20893179 20893179 T C SLCO1C1 Missense_Mutation p.I537T 0.19 tolerated(0.4) benign(0.004) TCGA-CR-7364-01 12 3147246 3147246 T A TEAD4 Missense_Mutation p.F337Y 0.21 deleterious(0) probably_damaging(0.976) TCGA-CR-7364-01 12 41966994 41966994 G T PDZRN4 Nonsense_Mutation p.E805* 0.26 TCGA-CR-7364-01 12 4702204 4702204 A G DYRK4 Missense_Mutation p.Y52C 0.21 deleterious(0) probably_damaging(0.91) TCGA-CR-7364-01 12 48368576 48368576 G C COL2A1 Missense_Mutation p.T1319S 0.22 unknown(0) TCGA-CR-7364-01 12 48389061 48389061 G C COL2A1 Missense_Mutation p.P247A 0.14 unknown(0) TCGA-CR-7364-01 12 48543741 48543741 T C ASB8 Missense_Mutation p.Y92C 0.30 deleterious(0) probably_damaging(0.996) TCGA-CR-7364-01 12 53563908 53563908 C T CSAD Missense_Mutation p.G244E 0.27 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 12 55615713 55615713 A G OR10A7 Missense_Mutation p.K302R 0.12 tolerated(1) benign(0.004) TCGA-CR-7364-01 12 57881758 57881758 G T MARS 5'UTR 0.36 TCGA-CR-7364-01 12 58218401 58218401 C T CTDSP2 Intron 0.28 TCGA-CR-7364-01 12 6623493 6623493 G T NCAPD2 Missense_Mutation p.R217L 0.17 deleterious(0) possibly_damaging(0.866) TCGA-CR-7364-01 12 6940435 6940435 G A LEPREL2 Silent p.P346P 0.13 TCGA-CR-7364-01 12 7639140 7639141 - C CD163 Frame_Shift_Ins p.Q805Afs*25 0.19 TCGA-CR-7364-01 12 78444708 78444708 G C NAV3 Missense_Mutation p.S766T 0.17 tolerated(0.12) benign(0.149) TCGA-CR-7364-01 12 80699365 80699365 T G OTOGL Missense_Mutation p.S1066A 0.27 tolerated(1) benign(0.004) TCGA-CR-7364-01 12 80699366 80699366 C G OTOGL Nonsense_Mutation p.S1066* 0.27 TCGA-CR-7364-01 12 9356471 9356471 T A PZP Missense_Mutation p.N54Y 0.23 deleterious(0) probably_damaging(0.994) TCGA-CR-7364-01 12 94603380 94603380 G A PLXNC1 Missense_Mutation p.G485E 0.19 tolerated(1) benign(0.001) TCGA-CR-7364-01 12 94641821 94641821 C G PLXNC1 Missense_Mutation p.P844R 0.23 deleterious(0) probably_damaging(0.994) TCGA-CR-7364-01 13 103701711 103701711 G C SLC10A2 Missense_Mutation p.L283V 0.61 tolerated(0.07) benign(0.119) TCGA-CR-7364-01 13 113887572 113887572 G A CUL4A Silent p.L198L 0.53 TCGA-CR-7364-01 13 26789615 26789615 C T RNF6 Missense_Mutation p.R135K 0.37 deleterious(0.01) benign(0.318) TCGA-CR-7364-01 13 28155627 28155627 T G LNX2 Missense_Mutation p.K72Q 0.45 tolerated(0.35) possibly_damaging(0.765) TCGA-CR-7364-01 13 42874719 42874719 A G AKAP11 Missense_Mutation p.S613G 0.26 tolerated(0.17) benign(0.008) TCGA-CR-7364-01 13 52639471 52639471 G A NEK5 3'UTR 0.39 TCGA-CR-7364-01 13 60616954 60616954 C T DIAPH3 Missense_Mutation p.G166R 0.29 deleterious(0.01) benign(0.11) TCGA-CR-7364-01 13 72063214 72063214 C T DACH1 Missense_Mutation p.G548E 0.34 possibly_damaging(0.876) TCGA-CR-7364-01 13 77672447 77672447 C A MYCBP2 Missense_Mutation p.D2910Y 0.32 possibly_damaging(0.794) TCGA-CR-7364-01 13 84453670 84453670 G T SLITRK1 Missense_Mutation p.A658E 0.44 tolerated(0.14) benign(0.375) TCGA-CR-7364-01 14 100934422 100934422 G C WDR25 Missense_Mutation p.R296P 0.23 deleterious(0) probably_damaging(0.998) TCGA-CR-7364-01 14 104640109 104640109 C T KIF26A Missense_Mutation p.A645V 0.27 deleterious(0.03) benign(0.334) TCGA-CR-7364-01 14 105920619 105920619 G - MTA1 Frame_Shift_Del p.A175Qfs*7 0.20 TCGA-CR-7364-01 14 106236462 106236462 G C IGHG3 Missense_Mutation p.P154R 0.30 tolerated(0.14) benign(0.005) TCGA-CR-7364-01 14 106236650 106236650 G C IGHG3 Missense_Mutation p.P139R 0.14 tolerated(0.54) benign(0.122) TCGA-CR-7364-01 14 106320561 106320561 G - IGHM Frame_Shift_Del p.H417Mfs*58 0.23 TCGA-CR-7364-01 14 19563520 19563520 C T POTEG Missense_Mutation p.A345V 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 14 22102184 22102184 G T OR10G2 Missense_Mutation p.P272H 0.25 tolerated(0.44) possibly_damaging(0.869) TCGA-CR-7364-01 14 22475783 22475783 G C TRAV19 5'UTR 0.27 TCGA-CR-7364-01 14 31852842 31852842 C T HEATR5A Missense_Mutation p.R201Q 0.32 tolerated(0.08) benign(0.173) TCGA-CR-7364-01 14 34269279 34269279 C T NPAS3 Missense_Mutation p.A589V 0.19 tolerated(0.15) benign(0) TCGA-CR-7364-01 14 63453789 63453789 C A KCNH5 Splice_Site p.X183_splice 0.30 TCGA-CR-7364-01 14 65511158 65511158 C G FNTB Missense_Mutation p.Q318E 0.22 tolerated(0.93) benign(0) TCGA-CR-7364-01 14 70263521 70263521 G A SLC10A1 Missense_Mutation p.L118F 0.28 deleterious(0) probably_damaging(0.997) TCGA-CR-7364-01 14 71058033 71058033 C T MED6 Missense_Mutation p.D178N 0.25 deleterious(0.05) possibly_damaging(0.533) TCGA-CR-7364-01 14 71058034 71058034 C A MED6 Silent p.V177V 0.24 TCGA-CR-7364-01 14 92336494 92336494 C T FBLN5 3'UTR 0.19 TCGA-CR-7364-01 14 92349360 92349360 C G FBLN5 Missense_Mutation p.G267A 0.23 deleterious(0) possibly_damaging(0.705) TCGA-CR-7364-01 14 95942074 95942074 C G SYNE3 Missense_Mutation p.V29L 0.18 tolerated(0.16) benign(0.008) TCGA-CR-7364-01 15 102201966 102201966 C G TARSL2 Missense_Mutation p.G674A 0.13 deleterious(0) possibly_damaging(0.907) TCGA-CR-7364-01 15 20643904 20643904 T C HERC2P3 RNA 0.11 TCGA-CR-7364-01 15 22709240 22709240 C A AC116165.1 5'Flank 0.16 TCGA-CR-7364-01 15 23889144 23889144 C A MAGEL2 Missense_Mutation p.R646L 0.09 deleterious_low_confidence(0.01) benign(0.129) TCGA-CR-7364-01 15 25415755 25415755 C A SNORD115-3 5'Flank 0.18 TCGA-CR-7364-01 15 25417815 25417815 G A SNORD115-2 RNA 0.24 TCGA-CR-7364-01 15 25463994 25463994 G T SNORD115-28 5'Flank 0.21 TCGA-CR-7364-01 15 30003139 30003139 T A TJP1 Missense_Mutation p.Q1423L 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.501) TCGA-CR-7364-01 15 34078040 34078040 G A RYR3 Missense_Mutation p.G3149D 0.28 probably_damaging(0.997) TCGA-CR-7364-01 15 42113133 42113133 C T MAPKBP1 Missense_Mutation p.S868F 0.30 deleterious(0) probably_damaging(0.943) TCGA-CR-7364-01 15 44921518 44921518 G A SPG11 Nonsense_Mutation p.Q602* 0.27 TCGA-CR-7364-01 15 45654207 45654207 A C GATM 3'UTR 0.29 TCGA-CR-7364-01 15 45965859 45965859 G C SQRDL Missense_Mutation p.V172L 0.34 tolerated(0.64) benign(0.007) TCGA-CR-7364-01 15 48429025 48429025 C T SLC24A5 Missense_Mutation p.P246S 0.29 tolerated(0.23) benign(0.001) TCGA-CR-7364-01 15 54860126 54860126 A G UNC13C Missense_Mutation p.I2029M 0.30 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CR-7364-01 15 57953656 57953656 A G GCOM1 Silent p.S376S 0.16 TCGA-CR-7364-01 15 62302756 62302756 G A VPS13C Missense_Mutation p.P309L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7364-01 15 64673546 64673546 C T KIAA0101 Missense_Mutation p.V9I 0.18 tolerated(0.07) benign(0.002) TCGA-CR-7364-01 15 65239631 65239631 C A ANKDD1A Missense_Mutation p.P390H 0.24 tolerated(0.14) benign(0.268) TCGA-CR-7364-01 15 65676728 65676728 G T IGDCC4 Silent p.A1124A 0.43 TCGA-CR-7364-01 15 65916538 65916538 C T SLC24A1 Silent p.H40H 0.18 TCGA-CR-7364-01 15 74178913 74178913 G T TBC1D21 Missense_Mutation p.R246L 0.37 deleterious(0) possibly_damaging(0.662) TCGA-CR-7364-01 15 75090969 75090969 C T CSK Missense_Mutation p.S10F 0.48 deleterious(0) possibly_damaging(0.483) TCGA-CR-7364-01 15 75648457 75648457 G C MAN2C1 Missense_Mutation p.A1014G 0.16 deleterious(0.03) probably_damaging(0.953) TCGA-CR-7364-01 15 76254225 76254225 A G NRG4 Silent p.F65F 0.49 TCGA-CR-7364-01 15 83328416 83328416 G A AP3B2 Silent p.L1049L 0.22 TCGA-CR-7364-01 15 83328417 83328417 G T AP3B2 Silent p.T1048T 0.25 TCGA-CR-7364-01 15 85200448 85200448 C G NMB Missense_Mutation p.A97P 0.41 deleterious(0.02) probably_damaging(0.986) TCGA-CR-7364-01 15 85488082 85488082 C T SLC28A1 Missense_Mutation p.R620C 0.38 deleterious(0.02) benign(0.007) TCGA-CR-7364-01 15 86312264 86312264 C A KLHL25 Nonsense_Mutation p.E260* 0.41 TCGA-CR-7364-01 15 88679705 88679705 G T NTRK3 Missense_Mutation p.T253N 0.15 tolerated(0.18) benign(0.14) TCGA-CR-7364-01 15 89424727 89424727 G A HAPLN3 Silent p.R118R 0.08 TCGA-CR-7364-01 16 10861862 10861862 A T NUBP1 Missense_Mutation p.T293S 0.56 tolerated(0.47) benign(0.184) TCGA-CR-7364-01 16 14973982 14973982 G T NOMO1 Silent p.G956G 0.19 TCGA-CR-7364-01 16 20430566 20430566 G T ACSM5 Silent p.P144P 0.31 TCGA-CR-7364-01 16 2235118 2235118 G T CASKIN1 Silent p.G411G 0.28 TCGA-CR-7364-01 16 24816384 24816384 G A TNRC6A Missense_Mutation p.R1345Q 0.51 deleterious(0.02) probably_damaging(0.997) TCGA-CR-7364-01 16 30408665 30408665 A T ZNF48 Missense_Mutation p.N32Y 0.25 deleterious(0.02) benign(0.03) TCGA-CR-7364-01 16 50745419 50745419 C T NOD2 Nonsense_Mutation p.Q533* 0.43 TCGA-CR-7364-01 16 72991344 72991344 C G ZFHX3 Missense_Mutation p.A901P 0.59 possibly_damaging(0.851) TCGA-CR-7364-01 16 86602395 86602395 C A FOXC2 Missense_Mutation p.P485Q 0.62 tolerated(0.77) probably_damaging(0.916) TCGA-CR-7364-01 17 10355578 10355578 G T MYH4 Missense_Mutation p.R1140S 0.39 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 17 1381744 1381744 G A MYO1C Missense_Mutation p.L419F 0.34 deleterious(0) probably_damaging(0.971) TCGA-CR-7364-01 17 17250289 17250289 G T NT5M 3'UTR 0.48 TCGA-CR-7364-01 17 26964893 26964893 C T KIAA0100 Missense_Mutation p.V578I 0.28 tolerated(0.29) benign(0.026) TCGA-CR-7364-01 17 27370155 27370155 C A PIPOX 5'UTR 0.19 TCGA-CR-7364-01 17 30692368 30692368 A T ZNF207 Silent p.P230P 0.37 TCGA-CR-7364-01 17 32582401 32582401 G T CCL2 Silent p.L11L 0.12 TCGA-CR-7364-01 17 34236333 34236333 G A AC015849.16 RNA 0.25 TCGA-CR-7364-01 17 40344951 40344951 G C GHDC Missense_Mutation p.N120K 0.27 tolerated(1) benign(0.001) TCGA-CR-7364-01 17 40368065 40368065 G A STAT5B Silent p.A480A 0.39 TCGA-CR-7364-01 17 42390790 42390790 G T RUNDC3A Missense_Mutation p.R126L 0.20 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 17 44061110 44061110 G C MAPT Missense_Mutation p.E314Q 0.24 deleterious(0) possibly_damaging(0.843) TCGA-CR-7364-01 17 48545852 48545852 T A CHAD Missense_Mutation p.H108L 0.23 deleterious(0) benign(0.05) TCGA-CR-7364-01 17 48545853 48545853 G T CHAD Missense_Mutation p.H108N 0.23 tolerated(0.81) benign(0.001) TCGA-CR-7364-01 17 50212253 50212253 C G CA10 Intron 0.22 TCGA-CR-7364-01 17 54990924 54990924 G A TRIM25 Silent p.D142D 0.40 TCGA-CR-7364-01 17 61566111 61566111 C A ACE Missense_Mutation p.P803Q 0.16 tolerated(0.33) benign(0.438) TCGA-CR-7364-01 17 62121439 62121439 A G ERN1 Missense_Mutation p.M948T 0.28 deleterious(0.01) possibly_damaging(0.819) TCGA-CR-7364-01 17 66040510 66040510 T A KPNA2 Missense_Mutation p.I413N 0.25 deleterious(0) probably_damaging(0.96) TCGA-CR-7364-01 17 7160292 7160292 G T ELP5 Missense_Mutation p.G192C 0.42 deleterious(0.02) probably_damaging(1) TCGA-CR-7364-01 17 72608743 72608743 G A CD300E 3'UTR 0.32 TCGA-CR-7364-01 17 7579433 7579433 G - TP53 Frame_Shift_Del p.P85Lfs*38 0.27 TCGA-CR-7364-01 17 79662939 79662939 A G HGS Missense_Mutation p.N435D 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-CR-7364-01 18 10696112 10696112 G C PIEZO2 Missense_Mutation p.H2271D 0.20 deleterious(0) probably_damaging(0.98) TCGA-CR-7364-01 18 3879232 3879232 C G DLGAP1 Missense_Mutation p.W279C 0.21 deleterious(0.04) benign(0.055) TCGA-CR-7364-01 18 43496500 43496500 G A EPG5 Missense_Mutation p.P1096L 0.27 tolerated(0.11) probably_damaging(0.991) TCGA-CR-7364-01 18 47803478 47803478 C G MBD1 Missense_Mutation p.L69F 0.19 tolerated(0.17) probably_damaging(0.997) TCGA-CR-7364-01 18 5489138 5489138 C T EPB41L3 Silent p.Q15Q 0.21 TCGA-CR-7364-01 18 55020099 55020099 C T ST8SIA3 Missense_Mutation p.R8W 0.30 possibly_damaging(0.876) TCGA-CR-7364-01 18 58039143 58039143 C A MC4R Missense_Mutation p.R147M 0.21 deleterious(0) probably_damaging(0.998) TCGA-CR-7364-01 18 5891714 5891714 G T TMEM200C Missense_Mutation p.P117T 0.20 tolerated(0.36) benign(0.031) TCGA-CR-7364-01 18 6955459 6955459 C T LAMA1 Silent p.Q2700Q 0.58 TCGA-CR-7364-01 18 70526311 70526311 T A NETO1 Splice_Site p.X74_splice 0.15 TCGA-CR-7364-01 18 72344576 72344576 G T ZNF407 Missense_Mutation p.G534V 0.28 deleterious(0) possibly_damaging(0.655) TCGA-CR-7364-01 19 18278076 18278076 G T PIK3R2 Missense_Mutation p.D566Y 0.30 deleterious(0) probably_damaging(0.971) TCGA-CR-7364-01 19 20002666 20002666 G T ZNF253 Nonsense_Mutation p.E204* 0.28 TCGA-CR-7364-01 19 20806968 20806968 T C ZNF626 3'UTR 0.23 TCGA-CR-7364-01 19 22940345 22940345 T A ZNF99 Missense_Mutation p.Y789F 0.31 tolerated(0.08) possibly_damaging(0.807) TCGA-CR-7364-01 19 22940512 22940512 G T ZNF99 Nonsense_Mutation p.Y733* 0.12 TCGA-CR-7364-01 19 2757733 2757733 C A SGTA Missense_Mutation p.G262V 0.36 tolerated(0.08) benign(0.01) TCGA-CR-7364-01 19 2757734 2757734 C A SGTA Missense_Mutation p.G262C 0.40 deleterious(0.01) possibly_damaging(0.653) TCGA-CR-7364-01 19 39976376 39976376 G T TIMM50 Nonsense_Mutation p.E244* 0.17 TCGA-CR-7364-01 19 40095319 40095319 G C LGALS13 Splice_Site p.X31_splice 0.26 TCGA-CR-7364-01 19 40222130 40222130 G T CLC Missense_Mutation p.Q107K 0.20 tolerated(0.72) benign(0.023) TCGA-CR-7364-01 19 40357440 40357440 C A FCGBP Silent p.V5291V 0.21 TCGA-CR-7364-01 19 42187951 42187951 C A CEACAM7 Silent p.P157P 0.27 TCGA-CR-7364-01 19 42406968 42406968 A T ARHGEF1 Missense_Mutation p.Q568L 0.26 deleterious(0) probably_damaging(0.963) TCGA-CR-7364-01 19 43529172 43529172 G T PSG11 Missense_Mutation p.A34D 0.25 deleterious(0) probably_damaging(0.982) TCGA-CR-7364-01 19 4442304 4442304 C T CHAF1A Silent p.G912G 0.33 TCGA-CR-7364-01 19 44536052 44536052 A G ZNF222 Silent p.Q115Q 0.28 TCGA-CR-7364-01 19 44890987 44890987 G T ZNF285 Missense_Mutation p.H474N 0.26 deleterious(0) probably_damaging(0.988) TCGA-CR-7364-01 19 46543550 46543550 G T IGFL4 Missense_Mutation p.S65R 0.27 deleterious(0.04) benign(0.154) TCGA-CR-7364-01 19 47884120 47884120 G T DHX34 Missense_Mutation p.M1010I 0.20 tolerated(0.15) benign(0.004) TCGA-CR-7364-01 19 52115387 52115387 C T SIGLEC5 3'UTR 0.28 TCGA-CR-7364-01 19 52468462 52468462 G A ZNF350 Missense_Mutation p.S415L 0.29 deleterious(0.03) possibly_damaging(0.614) TCGA-CR-7364-01 19 52468703 52468703 C T ZNF350 Missense_Mutation p.A335T 0.20 tolerated(0.15) probably_damaging(0.967) TCGA-CR-7364-01 19 54668180 54668180 G A TMC4 Silent p.T373T 0.27 TCGA-CR-7364-01 19 54867571 54867571 C A LAIR1 Missense_Mutation p.D237Y 0.24 deleterious(0.03) probably_damaging(0.99) TCGA-CR-7364-01 19 55087020 55087020 G T LILRA2 Splice_Site p.X318_splice 0.22 TCGA-CR-7364-01 19 55106733 55106733 G T LILRA1 Missense_Mutation p.G176V 0.20 deleterious(0) probably_damaging(0.994) TCGA-CR-7364-01 19 55143548 55143548 C G LILRB1 Missense_Mutation p.A174G 0.27 deleterious(0.04) benign(0.002) TCGA-CR-7364-01 19 55853662 55853662 G C SUV420H2 Missense_Mutation p.A64P 0.32 deleterious(0) probably_damaging(0.941) TCGA-CR-7364-01 19 57176038 57176038 G T ZNF835 Missense_Mutation p.Q177K 0.32 deleterious(0.03) possibly_damaging(0.467) TCGA-CR-7364-01 19 57327872 57327872 C - PEG3 Frame_Shift_Del p.I648Sfs*90 0.19 TCGA-CR-7364-01 19 58578900 58578900 G A ZNF135 Missense_Mutation p.G374R 0.36 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 19 6230694 6230694 C T MLLT1 Missense_Mutation p.D103N 0.32 deleterious(0.02) probably_damaging(1) TCGA-CR-7364-01 19 8969277 8969277 G T MUC16 Missense_Mutation p.A14356E 0.26 probably_damaging(0.998) TCGA-CR-7364-01 19 9059669 9059669 G T MUC16 Silent p.P9259P 0.41 TCGA-CR-7364-01 19 9578043 9578043 G A ZNF560 Missense_Mutation p.S527F 0.51 tolerated(0.7) benign(0.001) TCGA-CR-7364-01 1 109315300 109315300 A G STXBP3 Missense_Mutation p.D151G 0.29 deleterious(0.03) benign(0.332) TCGA-CR-7364-01 1 111060380 111060380 G A KCNA10 Missense_Mutation p.R344C 0.27 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 1 114397155 114397155 C T PTPN22 Missense_Mutation p.G230S 0.18 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 1 117487467 117487467 C T PTGFRN Silent p.S195S 0.27 TCGA-CR-7364-01 1 117560848 117560848 C T CD101 Silent p.S561S 0.11 TCGA-CR-7364-01 1 118165682 118165682 C T FAM46C Silent p.I64I 0.27 TCGA-CR-7364-01 1 118624066 118624066 C G SPAG17 Missense_Mutation p.M654I 0.20 tolerated(0.23) benign(0.167) TCGA-CR-7364-01 1 144868163 144868163 G A PDE4DIP Missense_Mutation p.T1759I 0.13 tolerated(0.4) benign(0.003) TCGA-CR-7364-01 1 147119326 147119326 C G ACP6 Missense_Mutation p.D396H 0.32 deleterious(0) benign(0.15) TCGA-CR-7364-01 1 148932810 148932810 G T RP11-14N7.2 RNA 0.12 TCGA-CR-7364-01 1 156554971 156554971 A G TTC24 Silent p.K468K 0.32 TCGA-CR-7364-01 1 157555966 157555966 G T FCRL4 Missense_Mutation p.T376N 0.32 deleterious(0.01) probably_damaging(0.922) TCGA-CR-7364-01 1 158151871 158151871 C T CD1D Silent p.N126N 0.25 TCGA-CR-7364-01 1 158323736 158323736 G A CD1E 5'UTR 0.11 TCGA-CR-7364-01 1 160523658 160523658 C A CD84 Intron 0.23 TCGA-CR-7364-01 1 16736455 16736455 C G SPATA21 Missense_Mutation p.Q76H 0.26 tolerated(0.08) benign(0.016) TCGA-CR-7364-01 1 169582838 169582838 G - SELP Frame_Shift_Del p.P192Qfs*6 0.20 TCGA-CR-7364-01 1 169696913 169696913 C A SELE Nonsense_Mutation p.G479* 0.23 TCGA-CR-7364-01 1 176903411 176903411 C A ASTN1 Missense_Mutation p.D850Y 0.32 deleterious(0.01) possibly_damaging(0.662) TCGA-CR-7364-01 1 186337063 186337063 T C TPR Missense_Mutation p.I128V 0.33 benign(0.031) TCGA-CR-7364-01 1 18809211 18809211 G T KLHDC7A Missense_Mutation p.R579L 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 1 197070947 197070947 T C ASPM Silent p.Q2478Q 0.19 TCGA-CR-7364-01 1 197397023 197397023 A T CRB1 Missense_Mutation p.R856S 0.32 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 1 197896918 197896918 T C LHX9 Silent p.L311L 0.21 TCGA-CR-7364-01 1 203453274 203453274 A G PRELP Missense_Mutation p.N321S 0.28 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 1 204130517 204130517 G A REN Silent p.I92I 0.21 TCGA-CR-7364-01 1 204159795 204159795 G T KISS1 Silent p.S78S 0.28 TCGA-CR-7364-01 1 205308834 205308834 G A KLHDC8A Missense_Mutation p.P160L 0.18 tolerated(0.06) benign(0.273) TCGA-CR-7364-01 1 205797807 205797807 C G PM20D1 Missense_Mutation p.E484Q 0.35 tolerated(0.5) benign(0.173) TCGA-CR-7364-01 1 206231182 206231182 T C AVPR1B 3'UTR 0.24 TCGA-CR-7364-01 1 208224624 208224624 G C PLXNA2 Missense_Mutation p.I1046M 0.16 tolerated(0.06) possibly_damaging(0.657) TCGA-CR-7364-01 1 210415652 210415652 A G SERTAD4 Silent p.K347K 0.22 TCGA-CR-7364-01 1 212911700 212911700 C G NSL1 3'UTR 0.27 TCGA-CR-7364-01 1 215990367 215990367 C T USH2A Missense_Mutation p.G3181E 0.23 probably_damaging(0.991) TCGA-CR-7364-01 1 216172316 216172316 C A USH2A Missense_Mutation p.W2190C 0.24 probably_damaging(0.984) TCGA-CR-7364-01 1 222803552 222803552 G C MIA3 Missense_Mutation p.R997P 0.37 deleterious(0.04) benign(0.007) TCGA-CR-7364-01 1 228033818 228033818 C A PRSS38 Missense_Mutation p.T297N 0.17 tolerated(0.18) benign(0.001) TCGA-CR-7364-01 1 236914832 236914832 G T ACTN2 Missense_Mutation p.Q573H 0.29 tolerated(0.06) possibly_damaging(0.672) TCGA-CR-7364-01 1 237608741 237608741 G A RYR2 Missense_Mutation p.S404N 0.27 benign(0.002) TCGA-CR-7364-01 1 237780711 237780711 C A RYR2 Silent p.V1947V 0.28 TCGA-CR-7364-01 1 237791164 237791164 T G RYR2 Missense_Mutation p.I2075S 0.14 probably_damaging(0.954) TCGA-CR-7364-01 1 237951287 237951287 G A RYR2 Splice_Site p.X4443_splice 0.40 TCGA-CR-7364-01 1 238046042 238046042 G T ZP4 Missense_Mutation p.R499S 0.19 tolerated(0.79) benign(0.014) TCGA-CR-7364-01 1 240370893 240370893 C T FMN2 Silent p.P927P 0.20 TCGA-CR-7364-01 1 240371006 240371006 C A FMN2 Missense_Mutation p.P965H 0.41 unknown(0) TCGA-CR-7364-01 1 241669303 241669303 C A FH Missense_Mutation p.G302C 0.32 deleterious(0.01) benign(0.237) TCGA-CR-7364-01 1 245865828 245865828 C A KIF26B Missense_Mutation p.R2083S 0.26 deleterious(0.05) unknown(0) TCGA-CR-7364-01 1 248084684 248084684 C A OR2T8 Missense_Mutation p.A122E 0.32 deleterious(0) benign(0.426) TCGA-CR-7364-01 1 248112456 248112456 G T OR2L8 Missense_Mutation p.Q99H 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-CR-7364-01 1 26648778 26648778 G A AIM1L Missense_Mutation p.P718S 0.27 tolerated(0.4) possibly_damaging(0.874) TCGA-CR-7364-01 1 29611279 29611279 C - PTPRU Frame_Shift_Del p.Q740Rfs*47 0.19 TCGA-CR-7364-01 1 33237601 33237601 C G KIAA1522 Missense_Mutation p.L941V 0.10 deleterious(0.01) probably_damaging(0.957) TCGA-CR-7364-01 1 33961077 33961077 G T ZSCAN20 3'UTR 0.15 TCGA-CR-7364-01 1 34666433 34666433 G T C1orf94 Missense_Mutation p.W357L 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-CR-7364-01 1 36298098 36298098 G T AGO4 Missense_Mutation p.A436S 0.28 tolerated(0.43) benign(0.002) TCGA-CR-7364-01 1 45294273 45294273 C G PTCH2 Missense_Mutation p.G499R 0.26 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 1 46726971 46726971 C A RAD54L Missense_Mutation p.P269T 0.30 deleterious(0) probably_damaging(0.987) TCGA-CR-7364-01 1 55545229 55545229 C A USP24 Silent p.G2394G 0.22 TCGA-CR-7364-01 1 57420405 57420405 G A C8B Nonsense_Mutation p.Q163* 0.24 TCGA-CR-7364-01 1 65278490 65278490 T C RAVER2 Missense_Mutation p.Y571H 0.19 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 1 68613868 68613868 G A WLS Missense_Mutation p.T360M 0.22 tolerated(0.1) possibly_damaging(0.817) TCGA-CR-7364-01 1 75072489 75072489 C A C1orf173 Missense_Mutation p.G429W 0.29 deleterious(0) probably_damaging(0.988) TCGA-CR-7364-01 1 76343943 76343943 A G MSH4 Missense_Mutation p.I494V 0.32 tolerated(0.35) benign(0.122) TCGA-CR-7364-01 1 76877998 76877998 G A ST6GALNAC3 Silent p.L173L 0.21 TCGA-CR-7364-01 1 77763626 77763626 G A AK5 Silent p.E231E 0.20 TCGA-CR-7364-01 1 91846506 91846506 G T HFM1 Missense_Mutation p.P279Q 0.14 deleterious(0.03) benign(0.271) TCGA-CR-7364-01 20 21376529 21376529 G A NKX2-4 3'UTR 0.46 TCGA-CR-7364-01 20 30363782 30363782 G A TPX2 Missense_Mutation p.A241T 0.46 deleterious(0.03) benign(0.245) TCGA-CR-7364-01 20 3147647 3147647 C A LZTS3 Missense_Mutation p.V55L 0.48 tolerated(0.08) possibly_damaging(0.872) TCGA-CR-7364-01 20 35885221 35885221 A T GHRH Silent p.P24P 0.19 TCGA-CR-7364-01 20 39316726 39316726 G C MAFB Missense_Mutation p.C255W 0.50 deleterious(0) probably_damaging(0.997) TCGA-CR-7364-01 20 40735527 40735527 T C PTPRT Missense_Mutation p.I1097V 0.62 tolerated(0.19) benign(0.003) TCGA-CR-7364-01 20 4202070 4202070 G C ADRA1D 3'UTR 0.38 TCGA-CR-7364-01 20 43251265 43251265 C A ADA Missense_Mutation p.G270V 0.60 deleterious(0) probably_damaging(0.993) TCGA-CR-7364-01 20 44519214 44519214 T C NEURL2 Silent p.P139P 0.59 TCGA-CR-7364-01 20 44685832 44685832 T A SLC12A5 Missense_Mutation p.M1073K 0.57 deleterious(0) probably_damaging(0.99) TCGA-CR-7364-01 20 53260098 53260098 A G DOK5 Silent p.G279G 0.16 TCGA-CR-7364-01 21 22746287 22746287 A C NCAM2 Silent p.A383A 0.20 TCGA-CR-7364-01 21 34923211 34923211 G T SON Silent p.L558L 0.22 TCGA-CR-7364-01 21 41450794 41450794 G T DSCAM Missense_Mutation p.L1511I 0.22 tolerated(0.1) possibly_damaging(0.644) TCGA-CR-7364-01 21 45402297 45402297 G T AGPAT3 3'UTR 0.24 TCGA-CR-7364-01 21 47557204 47557204 G A FTCD Silent p.F496F 0.26 TCGA-CR-7364-01 22 17601355 17601355 G T CECR6 Silent p.A221A 0.16 TCGA-CR-7364-01 22 19121856 19121856 G T DGCR14 Silent p.L428L 0.23 TCGA-CR-7364-01 22 21333755 21333755 C T AIFM3 Intron 0.40 TCGA-CR-7364-01 22 24829704 24829704 G T ADORA2A Missense_Mutation p.R111L 0.19 deleterious(0) benign(0.37) TCGA-CR-7364-01 22 26422934 26422934 G T MYO18B Missense_Mutation p.D2332Y 0.21 tolerated(0.11) benign(0.015) TCGA-CR-7364-01 22 29684763 29684763 G T EWSR1 Missense_Mutation p.R327L 0.17 tolerated(0.66) unknown(0) TCGA-CR-7364-01 22 30951150 30951150 G A GAL3ST1 Silent p.A354A 0.34 TCGA-CR-7364-01 22 32651265 32651265 G C SLC5A4 Missense_Mutation p.P18A 0.25 tolerated(0.6) benign(0.001) TCGA-CR-7364-01 22 42525169 42525169 T C CYP2D6 Missense_Mutation p.Y124C 0.37 deleterious(0) probably_damaging(0.989) TCGA-CR-7364-01 22 43015836 43015836 G C CYB5R3 Silent p.A316A 0.25 TCGA-CR-7364-01 22 50439538 50439538 G C IL17REL Missense_Mutation p.R28G 0.35 deleterious(0.04) possibly_damaging(0.864) TCGA-CR-7364-01 22 51018496 51018496 C G CHKB Silent p.G278G 0.26 TCGA-CR-7364-01 2 105954021 105954021 G A C2orf49 5'UTR 0.28 TCGA-CR-7364-01 2 112751909 112751909 A G MERTK Missense_Mutation p.R460G 0.31 deleterious(0.04) possibly_damaging(0.77) TCGA-CR-7364-01 2 113737705 113737706 - A IL36G Frame_Shift_Ins p.P95Afs*32 0.20 TCGA-CR-7364-01 2 118866018 118866018 G A INSIG2 3'UTR 0.35 TCGA-CR-7364-01 2 125547524 125547524 C A CNTNAP5 Missense_Mutation p.S932Y 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-CR-7364-01 2 133542404 133542404 C G NCKAP5 Missense_Mutation p.R660S 0.25 deleterious(0.03) probably_damaging(0.98) TCGA-CR-7364-01 2 155157934 155157934 G T GALNT13 Nonsense_Mutation p.G330* 0.28 TCGA-CR-7364-01 2 163099880 163099880 G T FAP 5'UTR 0.20 TCGA-CR-7364-01 2 169938164 169938164 G A DHRS9 Missense_Mutation p.E25K 0.29 tolerated(0.13) benign(0.008) TCGA-CR-7364-01 2 179404975 179404975 G - TTN Frame_Shift_Del p.Q32640Kfs*3 0.22 TCGA-CR-7364-01 2 179470318 179470318 G T TTN Silent p.R17902R 0.21 TCGA-CR-7364-01 2 179534147 179534147 T G TTN Missense_Mutation p.Q11833P 0.50 TCGA-CR-7364-01 2 179556770 179556770 T C TTN Missense_Mutation p.K10579E 0.29 TCGA-CR-7364-01 2 179597011 179597011 T A TTN Missense_Mutation p.Q5562L 0.32 TCGA-CR-7364-01 2 179639041 179639041 C A TTN Missense_Mutation p.R2317L 0.28 TCGA-CR-7364-01 2 182392030 182392030 A G ITGA4 Silent p.V782V 0.08 TCGA-CR-7364-01 2 196749473 196749473 A G DNAH7 Silent p.L1867L 0.26 TCGA-CR-7364-01 2 205986412 205986412 G A PARD3B Missense_Mutation p.G302S 0.46 tolerated(0.35) possibly_damaging(0.686) TCGA-CR-7364-01 2 207620081 207620081 C T MDH1B Missense_Mutation p.A188T 0.35 deleterious(0) benign(0.297) TCGA-CR-7364-01 2 208420421 208420421 A - CREB1 Frame_Shift_Del p.N22Tfs*4 0.27 TCGA-CR-7364-01 2 209010545 209010545 A G CRYGB Missense_Mutation p.W69R 0.30 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 2 209153476 209153476 A G PIKFYVE Missense_Mutation p.N282S 0.40 tolerated(1) benign(0) TCGA-CR-7364-01 2 21226197 21226197 C T APOB Missense_Mutation p.D4033N 0.27 benign(0.343) TCGA-CR-7364-01 2 217279485 217279485 G T SMARCAL1 Missense_Mutation p.A20S 0.40 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 2 238303598 238303598 C - COL6A3 Frame_Shift_Del p.G114Efs*9 0.19 TCGA-CR-7364-01 2 26696031 26696031 T G OTOF Silent p.P1234P 0.24 TCGA-CR-7364-01 2 27603383 27603383 C T ZNF513 Missense_Mutation p.R4K 0.25 tolerated(0.28) benign(0.002) TCGA-CR-7364-01 2 29169565 29169565 G A WDR43 Missense_Mutation p.E652K 0.27 tolerated_low_confidence(0.18) benign(0.001) TCGA-CR-7364-01 2 54125132 54125132 A T PSME4 Missense_Mutation p.W1161R 0.24 deleterious(0) probably_damaging(0.977) TCGA-CR-7364-01 2 61760930 61760930 A G XPO1 Silent p.L35L 0.27 TCGA-CR-7364-01 2 69046528 69046528 G T ARHGAP25 Intron 0.21 TCGA-CR-7364-01 2 71825794 71825794 G T DYSF Missense_Mutation p.E1225D 0.34 tolerated(0.52) benign(0.025) TCGA-CR-7364-01 2 74594514 74594514 C G DCTN1 Missense_Mutation p.E740Q 0.32 tolerated(0.12) probably_damaging(0.977) TCGA-CR-7364-01 2 75720464 75720464 C A EVA1A Missense_Mutation p.E119D 0.29 tolerated(0.07) probably_damaging(0.998) TCGA-CR-7364-01 2 79384406 79384406 C A REG3A Missense_Mutation p.W158C 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 2 80136849 80136849 C A CTNNA2 Missense_Mutation p.R328S 0.22 deleterious(0) probably_damaging(0.964) TCGA-CR-7364-01 2 85662935 85662935 G C SH2D6 Missense_Mutation p.R133S 0.45 deleterious(0.03) benign(0.256) TCGA-CR-7364-01 2 89265919 89265919 A T IGKV1-6 Nonsense_Mutation p.Y71* 0.28 TCGA-CR-7364-01 2 89975740 89975740 C T IGKV2D-30 Missense_Mutation p.L13F 0.21 tolerated(0.14) benign(0.025) TCGA-CR-7364-01 2 90153758 90153758 C A IGKV3D-15 Missense_Mutation p.A5E 0.21 deleterious(0.01) benign(0.443) TCGA-CR-7364-01 2 99013410 99013410 G - CNGA3 Frame_Shift_Del p.E593Kfs*14 0.27 TCGA-CR-7364-01 3 100119582 100119582 C A TOMM70A Missense_Mutation p.R71L 0.32 tolerated(0.31) benign(0.25) TCGA-CR-7364-01 3 108270064 108270064 T C KIAA1524 Missense_Mutation p.M884V 0.18 deleterious(0.05) benign(0.03) TCGA-CR-7364-01 3 122283260 122283260 C G DTX3L 5'UTR 0.38 TCGA-CR-7364-01 3 126201052 126201052 A T UROC1 3'UTR 0.28 TCGA-CR-7364-01 3 127783841 127783841 C T SEC61A1 Silent p.I246I 0.20 TCGA-CR-7364-01 3 129304823 129304823 G A PLXND1 Missense_Mutation p.S608F 0.05 tolerated(0.14) benign(0.121) TCGA-CR-7364-01 3 129389575 129389575 C A TMCC1 Missense_Mutation p.R370I 0.25 deleterious(0) probably_damaging(0.917) TCGA-CR-7364-01 3 134070860 134070860 G A AMOTL2 3'Flank 0.25 TCGA-CR-7364-01 3 134911580 134911580 G T EPHB1 Missense_Mutation p.R682L 0.34 deleterious(0) possibly_damaging(0.863) TCGA-CR-7364-01 3 137881194 137881194 T A DBR1 Missense_Mutation p.H391L 0.31 tolerated(0.66) benign(0) TCGA-CR-7364-01 3 142523472 142523472 G C TRPC1 Missense_Mutation p.K718N 0.25 tolerated(0.09) benign(0.283) TCGA-CR-7364-01 3 147131245 147131245 G T ZIC1 Silent p.P417P 0.15 TCGA-CR-7364-01 3 150659511 150659511 G T CLRN1 Silent p.I97I 0.26 TCGA-CR-7364-01 3 164725726 164725726 C G SI Missense_Mutation p.E1414Q 0.31 tolerated(0.53) benign(0.033) TCGA-CR-7364-01 3 165548790 165548790 C A BCHE Missense_Mutation p.R11I 0.30 tolerated(0.48) benign(0.007) TCGA-CR-7364-01 3 170078601 170078601 G T SKIL Missense_Mutation p.G161V 0.24 deleterious(0) probably_damaging(0.981) TCGA-CR-7364-01 3 170945955 170945955 C A TNIK Missense_Mutation p.G60V 0.23 deleterious(0.01) unknown(0) TCGA-CR-7364-01 3 25835674 25835674 G A OXSM Missense_Mutation p.A357T 0.46 tolerated(0.22) possibly_damaging(0.618) TCGA-CR-7364-01 3 32495753 32495753 C T CMTM7 3'UTR 0.23 TCGA-CR-7364-01 3 36779796 36779796 C A DCLK3 Missense_Mutation p.A119S 0.32 tolerated(0.36) benign(0.103) TCGA-CR-7364-01 3 39228156 39228156 C A XIRP1 Missense_Mutation p.Q927H 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-CR-7364-01 3 40570897 40570897 G C ZNF621 Missense_Mutation p.E38Q 0.32 deleterious(0.01) possibly_damaging(0.875) TCGA-CR-7364-01 3 44894181 44894181 G A KIF15 Missense_Mutation p.R1374H 0.22 deleterious(0) probably_damaging(0.912) TCGA-CR-7364-01 3 49020700 49020700 C G ARIH2 Silent p.T493T 0.29 TCGA-CR-7364-01 3 49691751 49691751 C G BSN Missense_Mutation p.Q1588E 0.35 unknown(0) TCGA-CR-7364-01 3 50314079 50314079 G A LSMEM2 5'Flank 0.25 TCGA-CR-7364-01 3 52428568 52428568 C A DNAH1 Silent p.R3572R 0.25 TCGA-CR-7364-01 3 52857966 52857966 C T ITIH4 Missense_Mutation p.R409Q 0.40 tolerated(0.79) benign(0.011) TCGA-CR-7364-01 3 74347306 74347306 C G CNTN3 Missense_Mutation p.G735R 0.26 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 3 87018113 87018113 C A VGLL3 Silent p.P188P 0.43 TCGA-CR-7364-01 3 98072954 98072954 T A OR5K4 Missense_Mutation p.F86Y 0.30 deleterious(0.02) benign(0.03) TCGA-CR-7364-01 4 1018993 1018993 A T FGFRL1 Missense_Mutation p.H458L 0.29 tolerated(0.29) benign(0.001) TCGA-CR-7364-01 4 110902034 110902034 G A EGF Silent p.K758K 0.19 TCGA-CR-7364-01 4 135121515 135121515 C A PABPC4L Missense_Mutation p.K278N 0.33 deleterious(0.04) possibly_damaging(0.901) TCGA-CR-7364-01 4 140640738 140640738 G A MAML3 Silent p.S1052S 0.14 TCGA-CR-7364-01 4 141868813 141868813 G T RNF150 Silent p.P295P 0.21 TCGA-CR-7364-01 4 143130163 143130163 C A INPP4B Nonsense_Mutation p.E285* 0.20 TCGA-CR-7364-01 4 154556600 154556600 C T KIAA0922 Silent p.A1478A 0.24 TCGA-CR-7364-01 4 155256021 155256021 C G DCHS2 Missense_Mutation p.L405F 0.27 tolerated(0.13) benign(0.272) TCGA-CR-7364-01 4 164087774 164087774 G A NAF1 Missense_Mutation p.P36S 0.33 tolerated_low_confidence(0.16) benign(0.001) TCGA-CR-7364-01 4 175896769 175896769 G T ADAM29 Silent p.P31P 0.32 TCGA-CR-7364-01 4 177056354 177056354 T C WDR17 Silent p.D422D 0.34 TCGA-CR-7364-01 4 177084375 177084375 A T WDR17 Missense_Mutation p.E998V 0.34 tolerated(0.11) possibly_damaging(0.453) TCGA-CR-7364-01 4 1827372 1827372 C A LETM1 Missense_Mutation p.K373N 0.24 tolerated(0.29) benign(0.034) TCGA-CR-7364-01 4 20493400 20493400 G C SLIT2 Missense_Mutation p.M264I 0.22 tolerated(0.16) benign(0.013) TCGA-CR-7364-01 4 38047458 38047458 G A TBC1D1 Silent p.L521L 0.23 TCGA-CR-7364-01 4 39436011 39436011 G T KLB Missense_Mutation p.G336V 0.23 tolerated(0.51) probably_damaging(0.956) TCGA-CR-7364-01 4 46737052 46737052 G A COX7B2 Missense_Mutation p.T53I 0.27 tolerated(0.27) benign(0.004) TCGA-CR-7364-01 4 46981101 46981101 C A GABRA4 Missense_Mutation p.V74L 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7364-01 4 47853907 47853907 G T NFXL1 Missense_Mutation p.T825K 0.19 tolerated(0.56) benign(0.017) TCGA-CR-7364-01 4 47939007 47939007 G T CNGA1 Missense_Mutation p.P571T 0.15 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 4 52895089 52895089 T A SGCB Splice_Site p.X144_splice 0.19 TCGA-CR-7364-01 4 53494256 53494256 C A USP46 Missense_Mutation p.L64F 0.32 deleterious(0) possibly_damaging(0.734) TCGA-CR-7364-01 4 54179841 54179841 G T SCFD2 Missense_Mutation p.A366E 0.33 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 4 6107640 6107640 G T JAKMIP1 Missense_Mutation p.Q62K 0.34 deleterious(0.03) probably_damaging(0.96) TCGA-CR-7364-01 4 69433907 69433907 T A UGT2B17 Missense_Mutation p.Y99F 0.51 tolerated(0.28) benign(0.051) TCGA-CR-7364-01 4 70080467 70080467 C T UGT2B11 5'Flank 0.29 TCGA-CR-7364-01 4 70513300 70513300 C T UGT2A1 Silent p.G21G 0.33 TCGA-CR-7364-01 4 74853045 74853045 G A PPBP Missense_Mutation p.P111S 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-CR-7364-01 4 78650155 78650155 C T CNOT6L Missense_Mutation p.D369N 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 4 8588894 8588894 G T GPR78 Missense_Mutation p.R299L 0.25 deleterious(0.05) possibly_damaging(0.52) TCGA-CR-7364-01 4 86915782 86915782 T C ARHGAP24 Silent p.H325H 0.25 TCGA-CR-7364-01 5 10391690 10391690 G A MARCH6 Missense_Mutation p.A205T 0.24 tolerated(0.64) benign(0.018) TCGA-CR-7364-01 5 1076277 1076277 C A SLC12A7 Missense_Mutation p.R608L 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-CR-7364-01 5 127782271 127782271 C A FBN2 Silent p.G285G 0.43 TCGA-CR-7364-01 5 131409633 131409633 C A CSF2 Silent p.A39A 0.29 TCGA-CR-7364-01 5 134345142 134345142 C A CATSPER3 Silent p.R300R 0.33 TCGA-CR-7364-01 5 13758967 13758967 C A DNAH5 Missense_Mutation p.M3469I 0.29 benign(0.001) TCGA-CR-7364-01 5 13786380 13786380 G A DNAH5 Silent p.L2910L 0.22 TCGA-CR-7364-01 5 140209910 140209910 T A PCDHA6 Missense_Mutation p.V745E 0.33 deleterious_low_confidence(0.01) benign(0.308) TCGA-CR-7364-01 5 149576820 149576820 C A SLC6A7 Missense_Mutation p.P189T 0.29 deleterious(0) probably_damaging(0.997) TCGA-CR-7364-01 5 150696552 150696552 C T SLC36A2 Silent p.L426L 0.35 TCGA-CR-7364-01 5 156786029 156786029 A G CYFIP2 Missense_Mutation p.Y871C 0.33 deleterious(0) probably_damaging(0.981) TCGA-CR-7364-01 5 176709508 176709508 G T NSD1 Nonsense_Mutation p.E1979* 0.34 TCGA-CR-7364-01 5 35910057 35910057 G A CAPSL Missense_Mutation p.P146S 0.24 deleterious(0.04) possibly_damaging(0.646) TCGA-CR-7364-01 5 35955699 35955699 T A UGT3A1 Intron 0.30 TCGA-CR-7364-01 5 35965526 35965526 C T UGT3A1 Missense_Mutation p.G269R 0.20 deleterious(0) probably_damaging(0.997) TCGA-CR-7364-01 5 39381644 39381644 G T DAB2 Silent p.P472P 0.29 TCGA-CR-7364-01 5 45303729 45303729 C G HCN1 Missense_Mutation p.M530I 0.20 deleterious(0.04) benign(0.033) TCGA-CR-7364-01 5 5146522 5146522 G T ADAMTS16 Missense_Mutation p.R152L 0.27 tolerated(0.1) benign(0.261) TCGA-CR-7364-01 5 5306737 5306737 C A ADAMTS16 Missense_Mutation p.L1103M 0.24 tolerated(0.16) benign(0.15) TCGA-CR-7364-01 5 53751686 53751686 C T HSPB3 Nonsense_Mutation p.R23* 0.37 TCGA-CR-7364-01 5 7521006 7521006 C A ADCY2 Silent p.V188V 0.22 TCGA-CR-7364-01 5 9119147 9119147 C A SEMA5A Missense_Mutation p.G630W 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 5 9337825 9337825 C A SEMA5A Missense_Mutation p.R75I 0.19 deleterious(0) possibly_damaging(0.819) TCGA-CR-7364-01 6 101037825 101037825 T A ASCC3 Missense_Mutation p.E1805V 0.24 deleterious(0) possibly_damaging(0.881) TCGA-CR-7364-01 6 101296082 101296082 C G ASCC3 Missense_Mutation p.C248S 0.15 deleterious(0.04) benign(0.025) TCGA-CR-7364-01 6 105606590 105606590 A T POPDC3 Missense_Mutation p.S211T 0.26 tolerated(0.49) benign(0.006) TCGA-CR-7364-01 6 107070746 107070746 C T RTN4IP1 Missense_Mutation p.G125S 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-CR-7364-01 6 117710810 117710810 G T ROS1 Missense_Mutation p.H488N 0.30 tolerated(0.33) benign(0.011) TCGA-CR-7364-01 6 118880079 118880079 G T PLN 5'UTR 0.38 TCGA-CR-7364-01 6 118887324 118887324 T A CEP85L Missense_Mutation p.M133L 0.16 tolerated(1) benign(0) TCGA-CR-7364-01 6 123687329 123687329 T C TRDN Splice_Site p.X425_splice 0.17 TCGA-CR-7364-01 6 129380955 129380955 G A LAMA2 Missense_Mutation p.D104N 0.31 deleterious(0) probably_damaging(0.99) TCGA-CR-7364-01 6 13053694 13053694 G A PHACTR1 Silent p.L116L 0.23 TCGA-CR-7364-01 6 130762603 130762603 C G TMEM200A Missense_Mutation p.P346A 0.20 tolerated(0.71) benign(0.006) TCGA-CR-7364-01 6 132270617 132270617 G A CTGF Silent p.Y279Y 0.20 TCGA-CR-7364-01 6 137815175 137815175 C T OLIG3 Missense_Mutation p.G45S 0.21 tolerated(1) benign(0.002) TCGA-CR-7364-01 6 147124080 147124080 G A ADGB Intron 0.15 TCGA-CR-7364-01 6 152647563 152647563 C A SYNE1 Missense_Mutation p.S5054I 0.21 benign(0.001) TCGA-CR-7364-01 6 154727611 154727611 G A CNKSR3 Silent p.A515A 0.30 TCGA-CR-7364-01 6 15497018 15497018 C G JARID2 Missense_Mutation p.S521C 0.21 tolerated(0.12) benign(0.376) TCGA-CR-7364-01 6 155718053 155718053 T C NOX3 Missense_Mutation p.R542G 0.28 deleterious(0.01) benign(0.174) TCGA-CR-7364-01 6 161128796 161128796 A G PLG Missense_Mutation p.I84V 0.25 tolerated(0.81) benign(0.006) TCGA-CR-7364-01 6 165801917 165801917 A G PDE10A Missense_Mutation p.L561P 0.27 deleterious(0) probably_damaging(0.973) TCGA-CR-7364-01 6 26045742 26045742 G T HIST1H3C Missense_Mutation p.G35V 0.17 deleterious_low_confidence(0.01) benign(0.227) TCGA-CR-7364-01 6 26046019 26046019 G T HIST1H3C Silent p.L127L 0.32 TCGA-CR-7364-01 6 27799255 27799255 C A HIST1H4K Missense_Mutation p.K17N 0.09 deleterious(0) benign(0.067) TCGA-CR-7364-01 6 33133582 33133582 G T COL11A2 Silent p.G1412G 0.20 TCGA-CR-7364-01 6 38867649 38867649 C A DNAH8 Missense_Mutation p.A2837D 0.18 probably_damaging(1) TCGA-CR-7364-01 6 40400710 40400710 G A LRFN2 Missense_Mutation p.P48L 0.21 deleterious(0.04) benign(0.026) TCGA-CR-7364-01 6 46135435 46135435 C A ENPP5 Missense_Mutation p.D189Y 0.30 deleterious(0) probably_damaging(0.926) TCGA-CR-7364-01 6 46214500 46214500 C T RCAN2 Missense_Mutation p.A186T 0.20 deleterious(0.02) benign(0.281) TCGA-CR-7364-01 6 47649740 47649740 A G GPR111 Missense_Mutation p.Y482C 0.20 deleterious(0.01) probably_damaging(1) TCGA-CR-7364-01 6 56489356 56489356 T C DST Missense_Mutation p.D1097G 0.19 probably_damaging(0.961) TCGA-CR-7364-01 6 57512689 57512689 G T PRIM2 3'UTR 0.12 TCGA-CR-7364-01 6 5999396 5999396 G T NRN1 Missense_Mutation p.T81K 0.17 tolerated(0.06) possibly_damaging(0.821) TCGA-CR-7364-01 6 70952405 70952405 T A COL9A1 Missense_Mutation p.E629V 0.31 benign(0.237) TCGA-CR-7364-01 6 76023776 76023776 C T FILIP1 Missense_Mutation p.C591Y 0.23 tolerated(0.35) benign(0.074) TCGA-CR-7364-01 6 86256905 86256905 C T SNX14 Missense_Mutation p.D345N 0.32 deleterious(0.03) probably_damaging(0.933) TCGA-CR-7364-01 6 90382061 90382061 G C MDN1 Nonsense_Mutation p.S4551* 0.19 TCGA-CR-7364-01 6 90718382 90718382 T C BACH2 Missense_Mutation p.Y61C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 6 96053988 96053988 C A MANEA Missense_Mutation p.R366S 0.21 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 6 97247474 97247474 C T GPR63 Missense_Mutation p.R45K 0.14 tolerated_low_confidence(0.9) benign(0) TCGA-CR-7364-01 6 9897113 9897113 G A OFCC1 Intron 0.12 TCGA-CR-7364-01 7 103194255 103194255 C A RELN Missense_Mutation p.V1941F 0.16 deleterious(0) benign(0.342) TCGA-CR-7364-01 7 103202352 103202352 C T RELN Silent p.G1753G 0.37 TCGA-CR-7364-01 7 107423469 107423469 G T SLC26A3 Missense_Mutation p.L397I 0.27 deleterious(0.02) possibly_damaging(0.764) TCGA-CR-7364-01 7 107696308 107696308 C T LAMB4 Missense_Mutation p.C1175Y 0.21 deleterious(0.01) possibly_damaging(0.658) TCGA-CR-7364-01 7 1132336 1132336 C T GPER1 Silent p.Y324Y 0.40 TCGA-CR-7364-01 7 117003704 117003704 T C ASZ1 Missense_Mutation p.I458M 0.25 deleterious(0.02) benign(0.043) TCGA-CR-7364-01 7 123270163 123270163 C A ASB15 Silent p.R528R 0.27 TCGA-CR-7364-01 7 142124180 142124180 C A TRBV6-8 Missense_Mutation p.A100S 0.26 tolerated(1) benign(0.004) TCGA-CR-7364-01 7 142482375 142482375 C A PRSS3P2 RNA 0.18 TCGA-CR-7364-01 7 148903833 148903833 G T ZNF282 Nonsense_Mutation p.E211* 0.29 TCGA-CR-7364-01 7 23383461 23383461 A T IGF2BP3 Nonsense_Mutation p.L318* 0.51 TCGA-CR-7364-01 7 26232884 26232885 - C HNRNPA2B1 Frame_Shift_Ins p.P330Tfs*37 0.18 TCGA-CR-7364-01 7 28857725 28857725 T A CREB5 Missense_Mutation p.L431Q 0.20 deleterious(0) unknown(0) TCGA-CR-7364-01 7 29152338 29152338 G C CPVL Missense_Mutation p.F90L 0.48 deleterious(0) benign(0.301) TCGA-CR-7364-01 7 31735160 31735160 C A PPP1R17 Missense_Mutation p.L54M 0.41 tolerated_low_confidence(0.06) benign(0.347) TCGA-CR-7364-01 7 34125437 34125437 T G BMPER Missense_Mutation p.L493R 0.38 deleterious(0) probably_damaging(0.993) TCGA-CR-7364-01 7 45005293 45005293 G A MYO1G Missense_Mutation p.P775L 0.50 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 7 48016391 48016391 G A HUS1 Missense_Mutation p.P134L 0.41 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 7 48411888 48411888 G T ABCA13 Missense_Mutation p.A3643S 0.35 benign(0.238) TCGA-CR-7364-01 7 5541042 5541042 C G FBXL18 Missense_Mutation p.M286I 0.41 deleterious(0.02) probably_damaging(0.981) TCGA-CR-7364-01 7 56062652 56062652 G A GBAS Missense_Mutation p.G228E 0.05 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 7 6042083 6042083 C T PMS2 Splice_Site p.X179_splice 0.06 TCGA-CR-7364-01 7 72985558 72985558 G A TBL2 Missense_Mutation p.A280V 0.25 deleterious(0) probably_damaging(0.99) TCGA-CR-7364-01 7 81346600 81346600 C G HGF Missense_Mutation p.W451C 0.23 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 7 82764673 82764673 C A PCLO Missense_Mutation p.K731N 0.19 unknown(0) TCGA-CR-7364-01 7 82784850 82784850 A G PCLO Silent p.A369A 0.23 TCGA-CR-7364-01 7 83590917 83590917 T C SEMA3A Missense_Mutation p.T696A 0.27 tolerated(0.64) benign(0.004) TCGA-CR-7364-01 7 97874270 97874270 G A TECPR1 Missense_Mutation p.P112L 0.23 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 8 110510777 110510777 T C PKHD1L1 Silent p.A3562A 0.29 TCGA-CR-7364-01 8 110530661 110530661 G T PKHD1L1 Missense_Mutation p.R3985S 0.25 deleterious(0.04) benign(0.001) TCGA-CR-7364-01 8 113249531 113249531 G C CSMD3 Nonsense_Mutation p.Y3505* 0.16 TCGA-CR-7364-01 8 113277722 113277722 G T CSMD3 Silent p.G3202G 0.32 TCGA-CR-7364-01 8 113317077 113317077 G A CSMD3 Silent p.S2713S 0.30 TCGA-CR-7364-01 8 11995836 11995836 G A USP17L2 Missense_Mutation p.P145L 0.34 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 8 12598387 12598387 T C LONRF1 Missense_Mutation p.Q320R 0.37 deleterious(0.03) benign(0.001) TCGA-CR-7364-01 8 133036754 133036754 C A OC90 Missense_Mutation p.G470W 0.36 tolerated(0.06) probably_damaging(0.995) TCGA-CR-7364-01 8 133856460 133856460 A G PHF20L1 Silent p.P936P 0.33 TCGA-CR-7364-01 8 135614050 135614050 C A ZFAT Missense_Mutation p.A638S 0.21 tolerated(0.81) benign(0.024) TCGA-CR-7364-01 8 144804268 144804272 GGCCC - MAPK15 Frame_Shift_Del p.G498Efs*74 0.12 TCGA-CR-7364-01 8 27310644 27310644 G A PTK2B Silent p.G854G 0.36 TCGA-CR-7364-01 8 38287450 38287450 G A FGFR1 Silent p.A69A 0.81 TCGA-CR-7364-01 8 41522471 41522471 T A ANK1 Intron 0.24 TCGA-CR-7364-01 8 41836253 41836253 C G KAT6A Missense_Mutation p.R317P 0.23 probably_damaging(0.979) TCGA-CR-7364-01 8 444571 444571 C T TDRP Nonsense_Mutation p.W45* 0.23 TCGA-CR-7364-01 8 55533742 55533742 G T RP1 Missense_Mutation p.R72S 0.20 deleterious(0.01) possibly_damaging(0.811) TCGA-CR-7364-01 8 57353977 57353977 G C PENK Missense_Mutation p.P220A 0.30 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 8 61774807 61774807 A G CHD7 Missense_Mutation p.H2628R 0.39 probably_damaging(0.921) TCGA-CR-7364-01 8 70594460 70594460 A C SLCO5A1 Missense_Mutation p.C581G 0.18 deleterious(0) probably_damaging(1) TCGA-CR-7364-01 8 75932314 75932314 G A CRISPLD1 Missense_Mutation p.R415K 0.28 deleterious(0) possibly_damaging(0.856) TCGA-CR-7364-01 8 86386585 86386585 G T CA2 Silent p.G128G 0.24 TCGA-CR-7364-01 8 92007999 92007999 C A TMEM55A Missense_Mutation p.W227L 0.27 deleterious(0) probably_damaging(0.973) TCGA-CR-7364-01 8 99101705 99101705 C A C8orf47 Missense_Mutation p.P154T 0.13 tolerated(1) benign(0.002) TCGA-CR-7364-01 9 100092789 100092789 C T CCDC180 Nonsense_Mutation p.Q716* 0.27 TCGA-CR-7364-01 9 123170649 123170649 C G CDK5RAP2 Missense_Mutation p.D1568H 0.32 deleterious(0) probably_damaging(0.99) TCGA-CR-7364-01 9 127253385 127253385 G C NR5A1 Silent p.L371L 0.37 TCGA-CR-7364-01 9 128099315 128099315 C T GAPVD1 Missense_Mutation p.S843F 0.40 deleterious_low_confidence(0) possibly_damaging(0.812) TCGA-CR-7364-01 9 140354823 140354823 C T PNPLA7 3'UTR 0.41 TCGA-CR-7364-01 9 38395768 38395768 G A ALDH1B1 Missense_Mutation p.R8Q 0.38 tolerated(0.2) benign(0.002) TCGA-CR-7364-01 9 43816796 43816796 C T CNTNAP3B Missense_Mutation p.S301F 0.22 tolerated(1) benign(0.007) TCGA-CR-7364-01 9 72897368 72897368 G A SMC5 Missense_Mutation p.E284K 0.36 tolerated(0.36) benign(0.014) TCGA-CR-7364-01 9 738306 738306 C T KANK1 Nonsense_Mutation p.Q1119* 0.40 TCGA-CR-7364-01 9 8340364 8340364 G T PTPRD Silent p.T1744T 0.41 TCGA-CR-7364-01 9 84607177 84607177 C T SPATA31D1 Silent p.L598L 0.35 TCGA-CR-7364-01 9 95738930 95738930 G T FGD3 Missense_Mutation p.G131V 0.42 deleterious(0.01) possibly_damaging(0.807) TCGA-CR-7364-01 X 101911283 101911283 G C GPRASP1 Missense_Mutation p.W814C 0.53 deleterious(0) benign(0.145) TCGA-CR-7364-01 X 104440323 104440323 G - IL1RAPL2 Frame_Shift_Del p.E84Kfs*11 0.34 TCGA-CR-7364-01 X 110644424 110644424 T C DCX Missense_Mutation p.S248G 0.59 tolerated(0.29) benign(0.001) TCGA-CR-7364-01 X 115594094 115594094 C G CT83 5'UTR 0.54 TCGA-CR-7364-01 X 122802034 122802034 T A THOC2 Missense_Mutation p.E331D 0.57 tolerated(0.26) benign(0.001) TCGA-CR-7364-01 X 129149413 129149413 C T BCORL1 Missense_Mutation p.P889S 0.40 probably_damaging(0.974) TCGA-CR-7364-01 X 136113046 136113046 C T GPR101 Missense_Mutation p.R263H 0.51 tolerated(0.83) benign(0.001) TCGA-CR-7364-01 X 142717001 142717001 C A SLITRK4 Missense_Mutation p.V642F 0.65 deleterious(0) probably_damaging(0.994) TCGA-CR-7364-01 X 151304000 151304000 G A MAGEA10 Silent p.P31P 0.60 TCGA-CR-7364-01 X 15344163 15344163 C T PIGA Missense_Mutation p.D241N 0.42 deleterious(0.01) probably_damaging(0.918) TCGA-CR-7364-01 X 155235022 155235022 A T IL9R Missense_Mutation p.H220L 0.48 tolerated(0.07) benign(0.001) TCGA-CR-7364-01 X 209702 209702 G T PLCXD1 Nonsense_Mutation p.E184* 0.18 TCGA-CR-7364-01 X 21875522 21875522 G T YY2 Missense_Mutation p.G307V 0.51 deleterious(0) probably_damaging(0.999) TCGA-CR-7364-01 X 34149264 34149264 C T FAM47A Missense_Mutation p.E378K 0.54 deleterious(0.04) probably_damaging(0.953) TCGA-CR-7364-01 X 41077827 41077827 G A USP9X Missense_Mutation p.A2138T 0.61 tolerated(0.53) benign(0) TCGA-CR-7364-01 X 49346301 49346301 G A GAGE12H Missense_Mutation p.G44R 0.22 tolerated(0.37) benign(0.024) TCGA-CR-7364-01 X 70463741 70463741 G A ZMYM3 Missense_Mutation p.R1124W 0.61 deleterious(0) probably_damaging(0.993) TCGA-CR-7364-01 X 70514351 70514351 G A NONO Missense_Mutation p.C208Y 0.50 deleterious(0) probably_damaging(0.969) TCGA-CR-7364-01 X 73066245 73066245 G A XIST RNA 0.64 TCGA-CR-7364-01 X 85950137 85950137 G T DACH2 Missense_Mutation p.A296S 0.67 tolerated(0.64) benign(0.006) TCGA-CR-7364-01 X 86773057 86773057 G T KLHL4 Missense_Mutation p.S54I 0.63 deleterious_low_confidence(0.01) possibly_damaging(0.784) TCGA-CR-7365-01 10 104184490 104184490 G C CUEDC2 Missense_Mutation p.S45W 0.41 deleterious(0) probably_damaging(0.997) TCGA-CR-7365-01 10 11505446 11505446 G A USP6NL Missense_Mutation p.S511L 0.18 deleterious_low_confidence(0.02) benign(0.287) TCGA-CR-7365-01 10 129141970 129141970 G C DOCK1 Missense_Mutation p.E1041Q 0.22 tolerated(0.06) benign(0.064) TCGA-CR-7365-01 10 26409613 26409613 T C MYO3A Silent p.G595G 0.14 TCGA-CR-7365-01 10 38240985 38240985 T C ZNF25 3'UTR 0.15 TCGA-CR-7365-01 10 82269077 82269077 C T TSPAN14 Silent p.L100L 0.44 TCGA-CR-7365-01 11 101323651 101323651 A G TRPC6 3'UTR 0.27 TCGA-CR-7365-01 11 104901918 104901918 T C CASP1 Missense_Mutation p.R143G 0.39 deleterious(0) benign(0.044) TCGA-CR-7365-01 11 118339526 118339526 G A KMT2A Missense_Mutation p.V157I 0.38 benign(0.007) TCGA-CR-7365-01 11 118895769 118895769 C T SLC37A4 Missense_Mutation p.G403R 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7365-01 11 119214569 119214569 C A MFRP Missense_Mutation p.V361L 0.31 tolerated(0.06) possibly_damaging(0.822) TCGA-CR-7365-01 11 125453532 125453532 C A EI24 Nonsense_Mutation p.S325* 0.41 TCGA-CR-7365-01 11 125453592 125453592 C T EI24 3'UTR 0.36 TCGA-CR-7365-01 11 17427072 17427072 C G ABCC8 Missense_Mutation p.R1123T 0.31 deleterious(0) probably_damaging(0.955) TCGA-CR-7365-01 11 17531964 17531964 A C USH1C Missense_Mutation p.N506K 0.45 deleterious_low_confidence(0) benign(0.21) TCGA-CR-7365-01 11 20622705 20622705 C G SLC6A5 Missense_Mutation p.L12V 0.26 deleterious_low_confidence(0.03) benign(0) TCGA-CR-7365-01 11 48328704 48328704 A G OR4S1 Nonstop_Mutation p.*310Wext*? 0.23 TCGA-CR-7365-01 11 5255269 5255269 C G HBD Silent p.L89L 0.34 TCGA-CR-7365-01 11 61404539 61404539 C G RPLP0P2 RNA 0.38 TCGA-CR-7365-01 11 65793518 65793518 G A CATSPER1 Silent p.Y111Y 0.14 TCGA-CR-7365-01 11 72406446 72406446 C G ARAP1 Missense_Mutation p.E1188Q 0.22 tolerated(0.1) possibly_damaging(0.653) TCGA-CR-7365-01 11 72406880 72406880 C T ARAP1 Missense_Mutation p.M1101I 0.34 deleterious(0) probably_damaging(0.965) TCGA-CR-7365-01 11 73789689 73789689 C G C2CD3 Missense_Mutation p.K1358N 0.36 tolerated(0.32) benign(0.274) TCGA-CR-7365-01 11 78381038 78381038 C T TENM4 Missense_Mutation p.E2118K 0.41 deleterious(0.04) possibly_damaging(0.542) TCGA-CR-7365-01 11 93464231 93464231 G T KIAA1731 3'Flank 0.22 TCGA-CR-7365-01 12 118105354 118105354 G A KSR2 Missense_Mutation p.R366C 0.37 deleterious(0.01) possibly_damaging(0.854) TCGA-CR-7365-01 12 120600729 120600729 C T GCN1L1 Silent p.K695K 0.33 TCGA-CR-7365-01 12 123061462 123061462 C G KNTC1 Silent p.L869L 0.39 TCGA-CR-7365-01 12 21471722 21471722 C G SLCO1A2 Missense_Mutation p.E66Q 0.27 deleterious(0) possibly_damaging(0.461) TCGA-CR-7365-01 12 25672833 25672833 G C IFLTD1 Missense_Mutation p.I325M 0.29 tolerated(0.22) benign(0.196) TCGA-CR-7365-01 12 49073534 49073534 C T KANSL2 Missense_Mutation p.G112S 0.26 tolerated(0.83) benign(0.009) TCGA-CR-7365-01 12 53410267 53410267 G C EIF4B Missense_Mutation p.K8N 0.23 tolerated(0.05) benign(0.403) TCGA-CR-7365-01 12 56816656 56816656 C T TIMELESS Missense_Mutation p.E805K 0.40 deleterious(0.04) benign(0.367) TCGA-CR-7365-01 12 71965319 71965319 G C LGR5 Missense_Mutation p.D366H 0.19 tolerated(0.07) possibly_damaging(0.853) TCGA-CR-7365-01 13 52158755 52158755 C G WDFY2 5'UTR 0.45 TCGA-CR-7365-01 13 76381901 76381901 A G LMO7 Silent p.V261V 0.33 TCGA-CR-7365-01 14 102504835 102504835 G C DYNC1H1 Silent p.L3649L 0.20 TCGA-CR-7365-01 14 23893298 23893298 G T MYH7 Missense_Mutation p.Q914K 0.28 deleterious(0.01) benign(0.082) TCGA-CR-7365-01 14 44975541 44975541 G A FSCB Missense_Mutation p.S217L 0.28 tolerated(1) benign(0.118) TCGA-CR-7365-01 14 53325091 53325091 C G FERMT2 3'UTR 0.15 TCGA-CR-7365-01 14 64906869 64906879 GTGAAATTATG - MTHFD1 Frame_Shift_Del p.E568Cfs*24 0.39 TCGA-CR-7365-01 14 88477180 88477180 A G GPR65 5'UTR 0.60 TCGA-CR-7365-01 14 95906295 95906295 C G SYNE3 Missense_Mutation p.E677Q 0.51 tolerated(0.3) benign(0.167) TCGA-CR-7365-01 15 43508574 43508574 G A EPB42 Missense_Mutation p.R60C 0.35 deleterious(0.02) possibly_damaging(0.884) TCGA-CR-7365-01 15 43924464 43924464 T C CATSPER2 Silent p.R498R 0.26 TCGA-CR-7365-01 15 49126974 49126974 C T SHC4 Missense_Mutation p.E577K 0.28 deleterious(0) probably_damaging(0.976) TCGA-CR-7365-01 15 63419597 63419597 C T LACTB Missense_Mutation p.R221C 0.28 deleterious(0) probably_damaging(1) TCGA-CR-7365-01 15 76426621 76426621 C G C15orf27 Missense_Mutation p.S6C 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.518) TCGA-CR-7365-01 15 80253297 80253297 C G BCL2A1 3'UTR 0.12 TCGA-CR-7365-01 15 81565513 81565513 G T IL16 Missense_Mutation p.G253V 0.29 deleterious(0) probably_damaging(0.996) TCGA-CR-7365-01 15 91505044 91505044 C G RCCD1 3'UTR 0.38 TCGA-CR-7365-01 16 1573848 1573848 G A IFT140 Missense_Mutation p.A1084V 0.24 deleterious(0) probably_damaging(0.992) TCGA-CR-7365-01 16 24802886 24802887 - T TNRC6A Frame_Shift_Ins p.P976Tfs*27 0.22 TCGA-CR-7365-01 16 2807470 2807470 C T SRRM2 Intron 0.27 TCGA-CR-7365-01 16 30199820 30199820 C T CORO1A Missense_Mutation p.R402W 0.38 deleterious(0) possibly_damaging(0.75) TCGA-CR-7365-01 16 4664715 4664715 C G UBALD1 Silent p.A28A 0.13 TCGA-CR-7365-01 16 56539947 56539947 G A BBS2 Missense_Mutation p.S240L 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7365-01 16 69199456 69199456 A G CIRH1A Intron 0.34 TCGA-CR-7365-01 16 81219116 81219116 C A PKD1L2 5'Flank 0.27 TCGA-CR-7365-01 17 18151261 18151261 C T FLII Silent p.L759L 0.29 TCGA-CR-7365-01 17 36552194 36552194 G A SOCS7 Silent p.Q573Q 0.35 TCGA-CR-7365-01 17 36869265 36869265 G T MLLT6 Intron 0.22 TCGA-CR-7365-01 17 36872785 36872785 C T MLLT6 Missense_Mutation p.S401F 0.41 deleterious(0) unknown(0) TCGA-CR-7365-01 17 37840929 37840929 C T PGAP3 Missense_Mutation p.S118N 0.38 tolerated(1) benign(0.006) TCGA-CR-7365-01 17 3981229 3981229 C T ZZEF1 Silent p.L979L 0.33 TCGA-CR-7365-01 17 40174467 40174467 A G NKIRAS2 Missense_Mutation p.T49A 0.38 deleterious(0) probably_damaging(0.996) TCGA-CR-7365-01 17 42483420 42483420 C G GPATCH8 Splice_Site p.X165_splice 0.37 TCGA-CR-7365-01 17 55182885 55182885 C A AKAP1 Silent p.L20L 0.40 TCGA-CR-7365-01 17 60042437 60042437 G C MED13 Missense_Mutation p.L1592V 0.20 tolerated(0.51) benign(0.064) TCGA-CR-7365-01 17 72308173 72308173 T A DNAI2 Missense_Mutation p.I509N 0.41 tolerated(0.11) benign(0.009) TCGA-CR-7365-01 17 72997458 72997458 C T CDR2L Missense_Mutation p.T72M 0.20 tolerated(0.25) benign(0.013) TCGA-CR-7365-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.73 deleterious(0) probably_damaging(1) TCGA-CR-7365-01 17 79612131 79612131 G A TSPAN10 Silent p.P50P 0.22 TCGA-CR-7365-01 18 48584552 48584552 C G SMAD4 Nonsense_Mutation p.S242* 0.58 TCGA-CR-7365-01 19 11242105 11242105 A G LDLR 3'UTR 0.42 TCGA-CR-7365-01 19 18990068 18990068 C T CERS1 Missense_Mutation p.M294I 0.13 deleterious(0.04) possibly_damaging(0.728) TCGA-CR-7365-01 19 24309211 24309211 G A ZNF254 Missense_Mutation p.E137K 0.37 tolerated(0.73) benign(0.013) TCGA-CR-7365-01 19 35790470 35790470 C T MAG Silent p.I143I 0.12 TCGA-CR-7365-01 19 3759797 3759797 C G APBA3 Missense_Mutation p.E156Q 0.23 tolerated(0.07) possibly_damaging(0.876) TCGA-CR-7365-01 19 49316972 49316972 T C HSD17B14 Missense_Mutation p.M164V 0.42 deleterious(0.01) benign(0.361) TCGA-CR-7365-01 19 50204760 50204760 G C CPT1C Missense_Mutation p.E188Q 0.30 tolerated(0.06) possibly_damaging(0.608) TCGA-CR-7365-01 19 50361359 50361359 G A PTOV1 Silent p.P308P 0.26 TCGA-CR-7365-01 19 50368399 50368399 C T PNKP Silent p.V161V 0.19 TCGA-CR-7365-01 19 50368482 50368482 C T PNKP Missense_Mutation p.E134K 0.18 tolerated(0.25) benign(0.002) TCGA-CR-7365-01 19 55690416 55690416 G A SYT5 5'UTR 0.31 TCGA-CR-7365-01 19 57061542 57061542 G T ZFP28 Missense_Mutation p.G265V 0.33 tolerated(0.36) possibly_damaging(0.844) TCGA-CR-7365-01 19 57174961 57174961 C G ZNF835 Missense_Mutation p.E536Q 0.46 deleterious_low_confidence(0) benign(0.002) TCGA-CR-7365-01 19 58102361 58102361 C A ZIK1 Silent p.L394L 0.34 TCGA-CR-7365-01 19 58863922 58863922 C T A1BG Splice_Site p.X114_splice 0.12 TCGA-CR-7365-01 1 11007909 11007909 C T C1orf127 Silent p.L761L 0.14 TCGA-CR-7365-01 1 115398091 115398091 A C SYCP1 Missense_Mutation p.E2D 0.26 tolerated(0.08) benign(0.079) TCGA-CR-7365-01 1 1163936 1163936 C G SDF4 Missense_Mutation p.E80Q 0.35 deleterious(0) probably_damaging(0.948) TCGA-CR-7365-01 1 1164020 1164020 C T SDF4 Missense_Mutation p.E52K 0.40 tolerated(0.16) benign(0.11) TCGA-CR-7365-01 1 12024727 12024727 C G PLOD1 Nonsense_Mutation p.S452* 0.42 TCGA-CR-7365-01 1 12446336 12446336 G A VPS13D Silent p.V3859V 0.17 TCGA-CR-7365-01 1 149784921 149784921 C T HIST2H3D Missense_Mutation p.E106K 0.17 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CR-7365-01 1 151542192 151542206 GGCCAAGCTTCAGGA - TUFT1 In_Frame_Del p.L183_K187del 0.17 TCGA-CR-7365-01 1 154171896 154171896 G A C1orf189 3'UTR 0.21 TCGA-CR-7365-01 1 155161971 155161971 C G MUC1 Silent p.V54V 0.15 TCGA-CR-7365-01 1 169694892 169694892 A C SELE Missense_Mutation p.I609S 0.31 tolerated(0.05) benign(0.002) TCGA-CR-7365-01 1 173456943 173456943 G T PRDX6 Missense_Mutation p.V206F 0.47 tolerated(0.52) benign(0.027) TCGA-CR-7365-01 1 179659915 179659915 C G TDRD5 Missense_Mutation p.S982C 0.21 deleterious(0) possibly_damaging(0.834) TCGA-CR-7365-01 1 203025593 203025593 G C PPFIA4 Missense_Mutation p.E227Q 0.21 deleterious(0.02) benign(0.002) TCGA-CR-7365-01 1 212965008 212965008 C A NSL1 Missense_Mutation p.R33L 0.34 tolerated(0.35) benign(0.005) TCGA-CR-7365-01 1 214549657 214549657 G A PTPN14 Nonsense_Mutation p.R938* 0.36 TCGA-CR-7365-01 1 226465500 226465500 G A LIN9 Silent p.L236L 0.20 TCGA-CR-7365-01 1 248309245 248309245 C T OR2M5 Missense_Mutation p.R266C 0.40 deleterious(0.03) benign(0.032) TCGA-CR-7365-01 1 248551737 248551737 C A OR2T6 Silent p.A276A 0.18 TCGA-CR-7365-01 1 27632792 27632792 T A WDTC1 Missense_Mutation p.I650N 0.37 deleterious(0.01) possibly_damaging(0.854) TCGA-CR-7365-01 1 35321025 35321025 T C SMIM12 3'UTR 0.17 TCGA-CR-7365-01 1 40129051 40129051 G C NT5C1A Silent p.L163L 0.45 TCGA-CR-7365-01 1 47395807 47395807 C T CYP4A11 Missense_Mutation p.E514K 0.20 tolerated_low_confidence(0.24) benign(0) TCGA-CR-7365-01 1 47882283 47882283 G A FOXE3 Missense_Mutation p.R99H 0.12 deleterious(0) probably_damaging(0.991) TCGA-CR-7365-01 1 53516455 53516455 G A SCP2 3'UTR 0.59 TCGA-CR-7365-01 1 55598230 55598230 G C USP24 Silent p.L1175L 0.42 TCGA-CR-7365-01 1 57216842 57216842 T C C1orf168 Missense_Mutation p.Q421R 0.06 deleterious(0.03) benign(0.103) TCGA-CR-7365-01 1 66378941 66378941 T G PDE4B 5'UTR 0.10 TCGA-CR-7365-01 1 68173379 68173379 T C GNG12 5'UTR 0.42 TCGA-CR-7365-01 1 70504342 70504342 T AA LRRC7 Frame_Shift_Ins p.N907Kfs*14 0.16 TCGA-CR-7365-01 1 74507588 74507588 C T LRRIQ3 Missense_Mutation p.E343K 0.11 tolerated(0.08) possibly_damaging(0.729) TCGA-CR-7365-01 20 20621406 20621407 - A RALGAPA2 Frame_Shift_Ins p.M163Ifs*18 0.16 TCGA-CR-7365-01 20 32232451 32232451 G A CBFA2T2 Silent p.%3D 0.26 TCGA-CR-7365-01 20 32232507 32232507 G C CBFA2T2 3'UTR 0.31 TCGA-CR-7365-01 20 34761727 34761727 G A EPB41L1 Missense_Mutation p.E10K 0.23 deleterious(0.01) benign(0.016) TCGA-CR-7365-01 20 43385614 43385614 G A RIMS4 Silent p.V173V 0.24 TCGA-CR-7365-01 20 44999107 44999107 T C ELMO2 Missense_Mutation p.E620G 0.20 deleterious(0.02) benign(0.191) TCGA-CR-7365-01 21 35208792 35208792 G C ITSN1 Missense_Mutation p.E1173Q 0.42 deleterious(0) probably_damaging(0.994) TCGA-CR-7365-01 22 29834658 29834658 G C RFPL1 5'UTR 0.48 TCGA-CR-7365-01 22 42981957 42981957 G T POLDIP3 Missense_Mutation p.P369Q 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7365-01 2 108489298 108489298 C G RGPD4 Missense_Mutation p.S1613C 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.592) TCGA-CR-7365-01 2 113591119 113591119 C A IL1B Missense_Mutation p.D45Y 0.33 deleterious(0) probably_damaging(0.943) TCGA-CR-7365-01 2 136579616 136579616 C A LCT Silent p.L320L 0.29 TCGA-CR-7365-01 2 158617419 158617419 C G ACVR1 Missense_Mutation p.E413Q 0.14 deleterious(0) probably_damaging(1) TCGA-CR-7365-01 2 160245956 160245956 C G BAZ2B Missense_Mutation p.R1039T 0.29 probably_damaging(0.954) TCGA-CR-7365-01 2 179579947 179579947 T C TTN Missense_Mutation p.K8656E 0.31 TCGA-CR-7365-01 2 190571721 190571721 A G ANKAR Silent p.Q656Q 0.11 TCGA-CR-7365-01 2 190617430 190617430 C T OSGEPL1 Missense_Mutation p.R372H 0.31 tolerated(0.06) benign(0.008) TCGA-CR-7365-01 2 203834680 203834680 G C CARF Missense_Mutation p.R331T 0.39 deleterious(0) benign(0.353) TCGA-CR-7365-01 2 215797408 215797408 G C ABCA12 Missense_Mutation p.Q2580E 0.24 tolerated(0.3) benign(0.05) TCGA-CR-7365-01 2 37501611 37501611 G A PRKD3 Missense_Mutation p.T535I 0.29 tolerated(0.61) benign(0.009) TCGA-CR-7365-01 2 68620335 68620335 G C PLEK Missense_Mutation p.L268F 0.24 deleterious(0) probably_damaging(1) TCGA-CR-7365-01 2 69093522 69093522 C T BMP10 Silent p.E172E 0.29 TCGA-CR-7365-01 2 73868736 73868736 C G NAT8 Missense_Mutation p.R7P 0.27 deleterious(0) probably_damaging(0.974) TCGA-CR-7365-01 2 73868737 73868737 G A NAT8 Missense_Mutation p.R7C 0.26 deleterious(0.03) benign(0.239) TCGA-CR-7365-01 2 74785901 74785901 G A M1AP Missense_Mutation p.S512F 0.14 deleterious(0.05) benign(0.095) TCGA-CR-7365-01 2 85097636 85097636 C G TRABD2A Missense_Mutation p.E128Q 0.27 tolerated(0.1) probably_damaging(0.976) TCGA-CR-7365-01 3 108308247 108308247 G A KIAA1524 5'UTR 0.25 TCGA-CR-7365-01 3 119462951 119462951 G A MAATS1 Missense_Mutation p.E604K 0.30 deleterious(0) probably_damaging(0.995) TCGA-CR-7365-01 3 124398320 124398320 G A KALRN Missense_Mutation p.E716K 0.22 tolerated(0.15) possibly_damaging(0.477) TCGA-CR-7365-01 3 148781271 148781271 G C HLTF Missense_Mutation p.I369M 0.29 tolerated(0.24) benign(0.01) TCGA-CR-7365-01 3 170786641 170786641 G T TNIK Missense_Mutation p.S1232Y 0.15 deleterious(0) probably_damaging(0.974) TCGA-CR-7365-01 3 37034576 37034576 G A EPM2AIP1 5'UTR 0.48 TCGA-CR-7365-01 4 110866313 110866313 A G EGF Silent p.K274K 0.23 TCGA-CR-7365-01 4 13601055 13601055 G T BOD1L1 Nonsense_Mutation p.S2490* 0.19 TCGA-CR-7365-01 4 152593929 152593930 - T PET112 Frame_Shift_Ins p.A511Gfs*19 0.26 TCGA-CR-7365-01 4 155161884 155161884 A G DCHS2 Silent p.N1933N 0.22 TCGA-CR-7365-01 4 17841312 17841313 - T NCAPG Frame_Shift_Ins p.D828* 0.21 TCGA-CR-7365-01 4 26322490 26322490 G C RBPJ Intron 0.21 TCGA-CR-7365-01 4 3021418 3021418 C T GRK4 Silent p.L264L 0.42 TCGA-CR-7365-01 4 4458949 4458949 G T STX18 Silent p.R156R 0.22 TCGA-CR-7365-01 4 70512979 70512979 G A UGT2A1 Silent p.G128G 0.35 TCGA-CR-7365-01 4 78641757 78641757 T A CNOT6L Missense_Mutation p.N499I 0.23 tolerated(0.22) possibly_damaging(0.58) TCGA-CR-7365-01 5 121405752 121405752 A T LOX Missense_Mutation p.S415T 0.46 tolerated(0.58) benign(0.401) TCGA-CR-7365-01 5 128984583 128984583 G C ADAMTS19 Missense_Mutation p.R693T 0.51 deleterious(0.01) possibly_damaging(0.742) TCGA-CR-7365-01 5 141358012 141358012 C T RNF14 Nonsense_Mutation p.Q151* 0.48 TCGA-CR-7365-01 5 141358039 141358039 C G RNF14 Missense_Mutation p.Q160E 0.29 tolerated(1) benign(0.001) TCGA-CR-7365-01 5 164028158 164028158 G A CTC-340A15.2 RNA 0.61 TCGA-CR-7365-01 5 35692806 35692806 G A SPEF2 Missense_Mutation p.E627K 0.35 tolerated(0.53) benign(0.003) TCGA-CR-7365-01 5 422960 422960 G A AHRR Silent p.P190P 0.11 TCGA-CR-7365-01 5 82834175 82834175 G T VCAN Nonsense_Mutation p.E1785* 0.53 TCGA-CR-7365-01 5 86675622 86675622 C G RASA1 Nonsense_Mutation p.S853* 0.47 TCGA-CR-7365-01 6 116968707 116968707 C G ZUFSP Missense_Mutation p.W461C 0.28 deleterious(0) probably_damaging(0.971) TCGA-CR-7365-01 6 126250026 126250026 T C NCOA7 3'UTR 0.55 TCGA-CR-7365-01 6 151161325 151161325 C T PLEKHG1 Nonsense_Mutation p.Q1151* 0.17 TCGA-CR-7365-01 6 158535902 158535902 G A SERAC1 Missense_Mutation p.H535Y 0.36 deleterious(0.03) possibly_damaging(0.664) TCGA-CR-7365-01 6 167753771 167753771 C T TTLL2 Missense_Mutation p.S128F 0.14 deleterious(0) possibly_damaging(0.816) TCGA-CR-7365-01 6 26043802 26043802 C G HIST1H2BB Missense_Mutation p.K28N 0.23 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CR-7365-01 6 26197074 26197074 C A HIST1H3D Missense_Mutation p.R135S 0.42 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-CR-7365-01 6 30859860 30859860 C G DDR1 Silent p.V249V 0.38 TCGA-CR-7365-01 6 30860256 30860256 C T DDR1 Silent p.L346L 0.49 TCGA-CR-7365-01 6 30862324 30862324 C G DDR1 Silent p.L463L 0.46 TCGA-CR-7365-01 6 31118878 31118878 G C CCHCR1 Missense_Mutation p.H275D 0.22 deleterious(0) probably_damaging(0.986) TCGA-CR-7365-01 6 39874211 39874211 G T MOCS1 3'UTR 0.42 TCGA-CR-7365-01 6 43007895 43007895 C G CUL7 Missense_Mutation p.K1515N 0.16 tolerated(0.18) benign(0.02) TCGA-CR-7365-01 6 43008291 43008291 C T CUL7 Missense_Mutation p.E1418K 0.23 deleterious(0.02) possibly_damaging(0.615) TCGA-CR-7365-01 6 44337822 44337822 C G SPATS1 Missense_Mutation p.P244A 0.44 deleterious(0.01) probably_damaging(1) TCGA-CR-7365-01 6 56338733 56338733 C T DST Missense_Mutation p.R4688K 0.67 benign(0.005) TCGA-CR-7365-01 6 74114465 74114466 - A DDX43 Frame_Shift_Ins p.M208Nfs*8 0.27 TCGA-CR-7365-01 7 21847506 21847506 A G DNAH11 Missense_Mutation p.I3398V 0.52 benign(0.003) TCGA-CR-7365-01 7 24784316 24784316 C A DFNA5 Missense_Mutation p.G90V 0.53 deleterious(0) probably_damaging(1) TCGA-CR-7365-01 7 53103452 53103452 G A POM121L12 Missense_Mutation p.A30T 0.26 tolerated(0.43) possibly_damaging(0.908) TCGA-CR-7365-01 7 53103453 53103453 C A POM121L12 Missense_Mutation p.A30E 0.26 tolerated(0.08) probably_damaging(0.962) TCGA-CR-7365-01 7 53103987 53103987 G A POM121L12 Missense_Mutation p.R208Q 0.40 tolerated(0.43) benign(0.022) TCGA-CR-7365-01 7 78636436 78636436 G T MAGI2 Missense_Mutation p.R130S 0.44 deleterious(0) probably_damaging(0.928) TCGA-CR-7365-01 7 82387815 82387815 G C PCLO 3'UTR 0.19 TCGA-CR-7365-01 8 104343656 104343656 C G FZD6 Silent p.L680L 0.24 TCGA-CR-7365-01 8 116631735 116631735 G C TRPS1 Nonsense_Mutation p.S197* 0.13 TCGA-CR-7365-01 8 144995066 144995066 C G PLEC Missense_Mutation p.E3112Q 0.26 benign(0.052) TCGA-CR-7365-01 8 144995127 144995127 C G PLEC Missense_Mutation p.K3091N 0.23 probably_damaging(0.999) TCGA-CR-7365-01 8 144995409 144995409 C T PLEC Silent p.E2997E 0.19 TCGA-CR-7365-01 8 144996152 144996152 C G PLEC Missense_Mutation p.E2750Q 0.08 benign(0.05) TCGA-CR-7365-01 8 144996219 144996219 C T PLEC Silent p.E2727E 0.12 TCGA-CR-7365-01 8 144996395 144996395 C T PLEC Missense_Mutation p.E2669K 0.50 possibly_damaging(0.599) TCGA-CR-7365-01 8 145638738 145638738 C T SLC39A4 Missense_Mutation p.D504N 0.22 deleterious(0) probably_damaging(0.998) TCGA-CR-7365-01 8 19681434 19681434 A G INTS10 Missense_Mutation p.K239E 0.32 tolerated(0.13) benign(0.187) TCGA-CR-7365-01 8 72958791 72958791 G T TRPA1 Missense_Mutation p.T673K 0.28 tolerated(0.75) benign(0.002) TCGA-CR-7365-01 8 72958807 72958807 C G TRPA1 Missense_Mutation p.E668Q 0.21 tolerated(0.37) benign(0.025) TCGA-CR-7365-01 9 136030585 136030585 G A GBGT1 Silent p.V113V 0.37 TCGA-CR-7365-01 9 138387170 138387170 C T C9orf116 3'UTR 0.16 TCGA-CR-7365-01 9 139400138 139400138 C T NOTCH1 Missense_Mutation p.E1404K 0.40 tolerated(0.23) benign(0.012) TCGA-CR-7365-01 9 139410477 139410477 T - NOTCH1 Frame_Shift_Del p.K542Sfs*89 0.46 TCGA-CR-7365-01 9 139910605 139910605 G C ABCA2 Missense_Mutation p.F1042L 0.40 tolerated(0.1) probably_damaging(0.998) TCGA-CR-7365-01 9 32448900 32448900 A - ACO1 Frame_Shift_Del p.A794Pfs*20 0.38 TCGA-CR-7365-01 9 32493813 32493813 G A DDX58 Silent p.I123I 0.50 TCGA-CR-7365-01 X 119066103 119066103 C G NKAP Missense_Mutation p.E272Q 0.59 deleterious(0.04) unknown(0) TCGA-CR-7365-01 X 127185039 127185039 C T ACTRT1 3'UTR 0.61 TCGA-CR-7365-01 X 153580304 153580305 AA - FLNA Frame_Shift_Del p.F2285* 0.40 TCGA-CR-7365-01 X 18183158 18183158 C G BEND2 Missense_Mutation p.D791H 0.60 deleterious(0) probably_damaging(0.994) TCGA-CR-7365-01 X 47837109 47837109 T C ZNF182 Missense_Mutation p.K126R 0.62 tolerated(0.11) benign(0.022) TCGA-CR-7365-01 X 53560308 53560308 C A HUWE1 Missense_Mutation p.A4363S 0.62 unknown(0) TCGA-CR-7365-01 X 53589155 53589155 C T HUWE1 Missense_Mutation p.E2419K 0.57 benign(0.292) TCGA-CR-7365-01 X 99657785 99657785 C G PCDH19 Missense_Mutation p.D785H 0.42 deleterious(0) probably_damaging(0.986) TCGA-CR-7367-01 10 129913914 129913914 T G MKI67 Missense_Mutation p.Q253P 0.07 tolerated(0.13) possibly_damaging(0.622) TCGA-CR-7367-01 10 131565165 131565165 G T MGMT Missense_Mutation p.L207F 0.24 tolerated(0.06) unknown(0) TCGA-CR-7367-01 10 1405839 1405839 G T ADARB2 Missense_Mutation p.P154Q 0.10 deleterious(0) probably_damaging(1) TCGA-CR-7367-01 10 27493384 27493384 T C ACBD5 Missense_Mutation p.Y517C 0.16 deleterious(0.04) probably_damaging(0.976) TCGA-CR-7367-01 10 48416563 48416563 G T GDF2 Missense_Mutation p.P44H 0.23 deleterious(0.01) possibly_damaging(0.717) TCGA-CR-7367-01 10 52005019 52005019 C T ASAH2 Missense_Mutation p.R108Q 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7367-01 10 73057778 73057778 A G UNC5B Missense_Mutation p.N868S 0.12 tolerated(1) benign(0) TCGA-CR-7367-01 11 123624803 123624803 G T OR6X1 Missense_Mutation p.L142M 0.14 deleterious(0.03) probably_damaging(0.951) TCGA-CR-7367-01 11 26529781 26529781 G A ANO3 Missense_Mutation p.R188K 0.13 tolerated(0.38) probably_damaging(0.989) TCGA-CR-7367-01 11 5221490 5221490 A C OR51V1 Missense_Mutation p.N147K 0.11 deleterious(0.02) benign(0.41) TCGA-CR-7367-01 11 554064 554064 C A LRRC56 Missense_Mutation p.Q473K 0.15 tolerated(0.77) benign(0.079) TCGA-CR-7367-01 11 56310671 56310671 C T OR5M11 Silent p.P21P 0.08 TCGA-CR-7367-01 11 57085295 57085295 A G TNKS1BP1 Silent p.A265A 0.22 TCGA-CR-7367-01 11 57582974 57582974 T C CTNND1 Splice_Site p.X936_splice 0.13 TCGA-CR-7367-01 11 62388037 62388038 - G B3GAT3 Frame_Shift_Ins p.A64Cfs*7 0.11 TCGA-CR-7367-01 11 71729904 71729904 T A NUMA1 Missense_Mutation p.E236V 0.16 probably_damaging(0.999) TCGA-CR-7367-01 11 94341767 94341767 G A PIWIL4 Missense_Mutation p.V620I 0.24 tolerated(0.31) benign(0.315) TCGA-CR-7367-01 12 112150407 112150407 C T ACAD10 Missense_Mutation p.P297S 0.13 tolerated(0.05) probably_damaging(0.998) TCGA-CR-7367-01 12 118517157 118517157 G T VSIG10 Missense_Mutation p.Q307K 0.08 deleterious(0.04) benign(0.135) TCGA-CR-7367-01 12 125470690 125470690 C T DHX37 Silent p.E76E 0.40 TCGA-CR-7367-01 12 129467741 129467741 G T GLT1D1 3'UTR 0.15 TCGA-CR-7367-01 12 30877333 30877333 G T CAPRIN2 Missense_Mutation p.P653Q 0.13 tolerated(0.15) possibly_damaging(0.889) TCGA-CR-7367-01 12 43822059 43822059 G A ADAMTS20 Silent p.T1310T 0.09 TCGA-CR-7367-01 12 53590515 53590515 G A ITGB7 Missense_Mutation p.R222C 0.35 deleterious(0.04) possibly_damaging(0.738) TCGA-CR-7367-01 12 56528126 56528126 G A ESYT1 Missense_Mutation p.A526T 0.24 tolerated(0.97) benign(0.002) TCGA-CR-7367-01 12 5685021 5685021 T C ANO2 Missense_Mutation p.D867G 0.11 tolerated(1) benign(0.002) TCGA-CR-7367-01 12 57604546 57604546 G A LRP1 Missense_Mutation p.C4267Y 0.13 benign(0.057) TCGA-CR-7367-01 12 66531827 66531827 G A TMBIM4 Silent p.Y210Y 0.36 TCGA-CR-7367-01 12 7048173 7048173 C A ATN1 Missense_Mutation p.S1016Y 0.23 probably_damaging(0.996) TCGA-CR-7367-01 12 97043804 97043804 T C C12orf55 Missense_Mutation p.V1609A 0.15 deleterious(0) benign(0.041) TCGA-CR-7367-01 12 9907188 9907188 G T CD69 Missense_Mutation p.N162K 0.23 deleterious(0.02) benign(0.088) TCGA-CR-7367-01 13 103518238 103518238 C T BIVM-ERCC5 Missense_Mutation p.H1152Y 0.15 deleterious(0.03) benign(0.063) TCGA-CR-7367-01 13 108518140 108518140 G T FAM155A Missense_Mutation p.Q269K 0.16 deleterious(0.05) possibly_damaging(0.731) TCGA-CR-7367-01 13 26971342 26971342 G A CDK8 Missense_Mutation p.D305N 0.21 tolerated(0.18) benign(0.081) TCGA-CR-7367-01 13 42803280 42803280 G A DGKH Missense_Mutation p.G1207R 0.13 deleterious(0) probably_damaging(0.991) TCGA-CR-7367-01 13 77566263 77566263 C T CLN5 Silent p.G59G 0.24 TCGA-CR-7367-01 13 78477688 78477688 T C EDNRB Missense_Mutation p.I270V 0.39 tolerated(0.11) benign(0.101) TCGA-CR-7367-01 13 84453689 84453689 G A SLITRK1 Nonsense_Mutation p.R652* 0.21 TCGA-CR-7367-01 14 106091381 106091381 C T IGHG4 Silent p.P171P 0.14 TCGA-CR-7367-01 14 24974805 24974805 G A CMA1 Missense_Mutation p.R221W 0.13 tolerated(0.12) possibly_damaging(0.896) TCGA-CR-7367-01 14 64496701 64496701 T C SYNE2 Missense_Mutation p.F2268S 0.07 possibly_damaging(0.533) TCGA-CR-7367-01 15 62939593 62939593 C G TLN2 Nonsense_Mutation p.Y28* 0.13 TCGA-CR-7367-01 16 11792153 11792153 G A TXNDC11 Missense_Mutation p.T312I 0.24 deleterious(0) probably_damaging(1) TCGA-CR-7367-01 16 15127244 15127244 G A PDXDC1 Silent p.E600E 0.24 TCGA-CR-7367-01 16 20486734 20486734 C T ACSM2A Silent p.Y315Y 0.20 TCGA-CR-7367-01 16 2569563 2569563 C T ATP6V0C Silent p.A95A 0.32 TCGA-CR-7367-01 16 27549582 27549582 A T GTF3C1 Missense_Mutation p.F176Y 0.15 tolerated(0.65) benign(0.317) TCGA-CR-7367-01 16 2880774 2880774 T G ZG16B Silent p.S80S 0.23 TCGA-CR-7367-01 16 30018259 30018259 G A DOC2A Missense_Mutation p.A242V 0.27 tolerated(0.75) benign(0.001) TCGA-CR-7367-01 16 30995053 30995053 A C SETD1A Missense_Mutation p.K1637T 0.21 unknown(0) TCGA-CR-7367-01 16 48580115 48580115 G T N4BP1 Missense_Mutation p.P759H 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7367-01 16 58552440 58552440 C T SETD6 Missense_Mutation p.T370I 0.12 tolerated(0.16) possibly_damaging(0.673) TCGA-CR-7367-01 16 596993 596993 G A CAPN15 Missense_Mutation p.R52H 0.11 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-CR-7367-01 17 32483155 32483155 C T ASIC2 Missense_Mutation p.V133M 0.12 tolerated(0.23) benign(0.322) TCGA-CR-7367-01 17 33592632 33592633 - A SLFN5 Frame_Shift_Ins p.Y803Ifs*2 0.18 TCGA-CR-7367-01 17 44770322 44770322 C T NSF Silent p.I333I 0.12 TCGA-CR-7367-01 17 48263006 48263006 G A COL1A1 Missense_Mutation p.H1418Y 0.16 unknown(0) TCGA-CR-7367-01 17 58009058 58009058 G A RPS6KB1 Silent p.P221P 0.15 TCGA-CR-7367-01 17 61957943 61957943 C T GH2 Missense_Mutation p.M215I 0.12 tolerated_low_confidence(0.4) benign(0) TCGA-CR-7367-01 17 62589665 62589665 G A SMURF2 Missense_Mutation p.T76M 0.08 deleterious(0) probably_damaging(0.99) TCGA-CR-7367-01 17 66381312 66381312 A T ARSG Missense_Mutation p.S364C 0.33 deleterious(0) probably_damaging(0.994) TCGA-CR-7367-01 17 7847811 7847811 C T CNTROB Missense_Mutation p.A530V 0.14 tolerated(0.06) possibly_damaging(0.642) TCGA-CR-7367-01 17 79826727 79826727 C T ARHGDIA 3'UTR 0.19 TCGA-CR-7367-01 18 40854093 40854093 G T SYT4 Missense_Mutation p.L101I 0.12 deleterious(0.04) probably_damaging(0.942) TCGA-CR-7367-01 18 44260231 44260231 C T ST8SIA5 Missense_Mutation p.G302D 0.17 probably_damaging(1) TCGA-CR-7367-01 18 63511243 63511243 G A CDH7 Missense_Mutation p.G393R 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7367-01 18 72999914 72999914 T A TSHZ1 Missense_Mutation p.L806Q 0.10 tolerated(0.34) probably_damaging(0.993) TCGA-CR-7367-01 18 76757094 76757094 G A SALL3 Missense_Mutation p.M1225I 0.17 deleterious(0.01) possibly_damaging(0.771) TCGA-CR-7367-01 19 10570295 10570295 C T PDE4A Missense_Mutation p.R409C 0.13 tolerated(0.05) possibly_damaging(0.723) TCGA-CR-7367-01 19 12256889 12256889 C T ZNF625 Silent p.R114R 0.22 TCGA-CR-7367-01 19 1785624 1785624 G A ATP8B3 Silent p.F1079F 0.15 TCGA-CR-7367-01 19 39191741 39191741 T A ACTN4 Missense_Mutation p.L126Q 0.27 deleterious(0) possibly_damaging(0.788) TCGA-CR-7367-01 19 42314017 42314017 G A CEACAM3 Missense_Mutation p.R186H 0.11 tolerated(0.64) benign(0) TCGA-CR-7367-01 19 45004353 45004353 G T ZNF180 5'UTR 0.22 TCGA-CR-7367-01 19 46388533 46388533 A T IRF2BP1 Missense_Mutation p.L167Q 0.13 tolerated(0.07) benign(0.354) TCGA-CR-7367-01 19 50250010 50250010 G A TSKS Nonsense_Mutation p.R237* 0.14 TCGA-CR-7367-01 19 53418480 53418480 C T ZNF888 RNA 0.13 TCGA-CR-7367-01 19 54377153 54377153 T C MYADM Missense_Mutation p.Y124H 0.13 tolerated(0.11) probably_damaging(0.969) TCGA-CR-7367-01 19 55481573 55481573 G C NLRP2 Missense_Mutation p.D64H 0.17 tolerated(0.45) benign(0.005) TCGA-CR-7367-01 19 55494909 55494909 G T NLRP2 Nonsense_Mutation p.E615* 0.27 TCGA-CR-7367-01 19 56047567 56047567 A T SBK2 Missense_Mutation p.L32H 0.10 deleterious(0) unknown(0) TCGA-CR-7367-01 19 56156365 56156365 G A ZNF581 Missense_Mutation p.R143Q 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-CR-7367-01 19 56369225 56369225 C T NLRP4 Missense_Mutation p.P156S 0.10 tolerated(0.93) benign(0.004) TCGA-CR-7367-01 19 6714452 6714452 C T C3 Silent p.P170P 0.10 TCGA-CR-7367-01 1 103491099 103491099 C T COL11A1 Missense_Mutation p.R323K 0.11 possibly_damaging(0.476) TCGA-CR-7367-01 1 104115869 104115869 A G AMY2B Missense_Mutation p.N167S 0.11 tolerated(0.19) benign(0) TCGA-CR-7367-01 1 11734731 11734731 G A MAD2L2 3'UTR 0.18 TCGA-CR-7367-01 1 12326995 12326995 G A VPS13D Missense_Mutation p.R551Q 0.32 benign(0.005) TCGA-CR-7367-01 1 145581554 145581554 A G PIAS3 Missense_Mutation p.I379V 0.14 tolerated(0.32) benign(0.011) TCGA-CR-7367-01 1 151824868 151824868 G A THEM5 Missense_Mutation p.S64L 0.15 tolerated(0.06) benign(0.001) TCGA-CR-7367-01 1 159785428 159785428 G A FCRL6 Missense_Mutation p.D428N 0.18 tolerated(0.49) benign(0.004) TCGA-CR-7367-01 1 220153465 220153465 T C EPRS Missense_Mutation p.I1225V 0.08 tolerated(1) benign(0.002) TCGA-CR-7367-01 1 227935683 227935683 C T SNAP47 Silent p.S127S 0.08 TCGA-CR-7367-01 1 231396372 231396372 C A GNPAT Missense_Mutation p.S127R 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-CR-7367-01 1 23637236 23637241 GGTCCC - HNRNPR In_Frame_Del p.G540_P541del 0.21 TCGA-CR-7367-01 1 237659856 237659856 G A RYR2 Silent p.Q669Q 0.18 TCGA-CR-7367-01 1 243708856 243708856 T C AKT3 Missense_Mutation p.S403G 0.12 tolerated(0.14) benign(0.3) TCGA-CR-7367-01 1 248223987 248223987 G T OR2L3 Nonsense_Mutation p.E2* 0.20 TCGA-CR-7367-01 1 248224181 248224181 C G OR2L3 Silent p.S66S 0.10 TCGA-CR-7367-01 1 50666696 50666696 G A ELAVL4 Missense_Mutation p.R333H 0.14 deleterious(0.02) probably_damaging(0.977) TCGA-CR-7367-01 1 55282673 55282673 T A C1orf177 Silent p.G354G 0.14 TCGA-CR-7367-01 1 57351627 57351627 A T C8A Nonsense_Mutation p.K295* 0.42 TCGA-CR-7367-01 1 57611078 57611078 A G DAB1 Missense_Mutation p.L31S 0.09 deleterious(0) probably_damaging(1) TCGA-CR-7367-01 1 6635143 6635143 C T TAS1R1 Silent p.R317R 0.21 TCGA-CR-7367-01 1 86529426 86529426 G C COL24A1 Missense_Mutation p.P575R 0.18 tolerated(0.11) possibly_damaging(0.78) TCGA-CR-7367-01 20 16721614 16721614 G A SNRPB2 Silent p.P214P 0.12 TCGA-CR-7367-01 20 40162087 40162087 A G CHD6 Silent p.A52A 0.36 TCGA-CR-7367-01 20 50769409 50769409 C T ZFP64 Missense_Mutation p.R441H 0.27 deleterious(0.04) benign(0.089) TCGA-CR-7367-01 20 60888727 60888727 C T LAMA5 Missense_Mutation p.G2879E 0.18 possibly_damaging(0.517) TCGA-CR-7367-01 22 16267041 16267041 G A POTEH Silent p.L470L 0.04 TCGA-CR-7367-01 22 16267042 16267042 G T POTEH Missense_Mutation p.N469K 0.04 deleterious(0) probably_damaging(0.997) TCGA-CR-7367-01 22 46859980 46859980 G A CELSR1 Silent p.G1269G 0.11 TCGA-CR-7367-01 2 127451474 127451474 C A GYPC Silent p.G47G 0.09 TCGA-CR-7367-01 2 153504404 153504404 C T FMNL2 Silent p.A1088A 0.10 TCGA-CR-7367-01 2 15417199 15417199 C G NBAS Missense_Mutation p.R1722T 0.11 deleterious(0) probably_damaging(0.987) TCGA-CR-7367-01 2 170592711 170592711 G T KLHL23 Missense_Mutation p.W396L 0.10 deleterious(0) probably_damaging(0.999) TCGA-CR-7367-01 2 183627484 183627484 A C DNAJC10 Silent p.R741R 0.07 TCGA-CR-7367-01 2 1921066 1921066 C A MYT1L Missense_Mutation p.G508V 0.32 deleterious(0) probably_damaging(1) TCGA-CR-7367-01 2 202093999 202093999 C A CASP10 3'UTR 0.45 TCGA-CR-7367-01 2 202593826 202593826 C T ALS2 Silent p.K887K 0.62 TCGA-CR-7367-01 2 211502448 211502448 C G CPS1 Missense_Mutation p.L910V 0.16 deleterious(0.04) benign(0.423) TCGA-CR-7367-01 2 21239357 21239357 T C APOB Missense_Mutation p.I1096V 0.11 benign(0.072) TCGA-CR-7367-01 2 233398936 233398936 C T CHRND Missense_Mutation p.R419W 0.15 deleterious(0.03) possibly_damaging(0.697) TCGA-CR-7367-01 2 233680442 233680442 G T GIGYF2 Missense_Mutation p.A756S 0.09 probably_damaging(0.995) TCGA-CR-7367-01 2 240085518 240085518 C T HDAC4 Missense_Mutation p.D198N 0.21 tolerated(0.54) probably_damaging(0.999) TCGA-CR-7367-01 2 24011485 24011485 C A ATAD2B Missense_Mutation p.E891D 0.35 deleterious(0) probably_damaging(0.957) TCGA-CR-7367-01 2 74745638 74745638 C T DQX1 Missense_Mutation p.D697N 0.13 tolerated(0.38) benign(0.07) TCGA-CR-7367-01 3 105421037 105421037 T A CBLB Silent p.T620T 0.16 TCGA-CR-7367-01 3 107096565 107096565 G C CCDC54 Missense_Mutation p.G44A 0.14 tolerated(0.19) benign(0.033) TCGA-CR-7367-01 3 126220060 126220060 C T UROC1 Splice_Site p.X382_splice 0.09 TCGA-CR-7367-01 3 12653459 12653459 C T RAF1 Missense_Mutation p.E104K 0.35 tolerated(0.82) benign(0.009) TCGA-CR-7367-01 3 130742943 130742943 C A ASTE1 Missense_Mutation p.S403I 0.32 tolerated(0.15) benign(0.235) TCGA-CR-7367-01 3 136574278 136574278 G A SLC35G2 Missense_Mutation p.V326I 0.28 tolerated(1) benign(0.001) TCGA-CR-7367-01 3 149216509 149216509 G C TM4SF4 Silent p.G134G 0.10 TCGA-CR-7367-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.12 tolerated(0.11) possibly_damaging(0.529) TCGA-CR-7367-01 3 183961346 183961346 G A ALG3 Silent p.P335P 0.08 TCGA-CR-7367-01 3 184059698 184059698 G A FAM131A Intron 0.34 TCGA-CR-7367-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.20 tolerated(0.19) possibly_damaging(0.569) TCGA-CR-7367-01 3 47552662 47552662 G T ELP6 Missense_Mutation p.H37N 0.14 deleterious(0) probably_damaging(1) TCGA-CR-7367-01 3 48491541 48491541 G T ATRIP Missense_Mutation p.V116L 0.36 tolerated(0.06) benign(0.002) TCGA-CR-7367-01 3 49744294 49744294 G A RNF123 Missense_Mutation p.R820H 0.19 deleterious(0) probably_damaging(0.999) TCGA-CR-7367-01 4 100062731 100062731 C T ADH4 Missense_Mutation p.V75M 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7367-01 4 100205642 100205642 T C ADH1A Missense_Mutation p.I161V 0.15 tolerated(0.22) benign(0.047) TCGA-CR-7367-01 4 109088757 109088757 G A LEF1 Missense_Mutation p.S56F 0.17 deleterious(0) probably_damaging(0.974) TCGA-CR-7367-01 4 110222987 110222987 G A COL25A1 Silent p.I63I 0.13 TCGA-CR-7367-01 4 155158157 155158157 G A DCHS2 Silent p.F2094F 0.14 TCGA-CR-7367-01 4 1955057 1955057 A T WHSC1 Missense_Mutation p.H715L 0.10 deleterious(0) probably_damaging(0.917) TCGA-CR-7367-01 4 53751945 53751945 T C SCFD2 Missense_Mutation p.D644G 0.10 deleterious(0.01) possibly_damaging(0.715) TCGA-CR-7367-01 4 7026838 7026848 TCCTGAAGCTG - TBC1D14 Frame_Shift_Del p.L623Rfs*104 0.23 TCGA-CR-7367-01 4 70359477 70359477 G T UGT2B4 Missense_Mutation p.H268Q 0.31 tolerated(0.05) possibly_damaging(0.616) TCGA-CR-7367-01 4 72423471 72423471 C T SLC4A4 Nonsense_Mutation p.Q936* 0.27 TCGA-CR-7367-01 4 73012719 73012719 T G NPFFR2 Missense_Mutation p.F253L 0.07 tolerated(0.23) probably_damaging(0.999) TCGA-CR-7367-01 4 84384670 84384670 C A FAM175A Missense_Mutation p.R258I 0.11 deleterious(0) possibly_damaging(0.543) TCGA-CR-7367-01 4 86988972 86988972 G C MAPK10 Missense_Mutation p.F313L 0.28 tolerated(0.06) probably_damaging(1) TCGA-CR-7367-01 4 89318075 89318075 C A HERC6 Missense_Mutation p.S320R 0.05 tolerated(0.31) benign(0.005) TCGA-CR-7367-01 5 137426351 137426351 G A WNT8A Silent p.A215A 0.17 TCGA-CR-7367-01 5 140165973 140165973 A C PCDHA1 Missense_Mutation p.Y33S 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-7367-01 5 140209865 140209865 G A PCDHA6 Missense_Mutation p.G730D 0.36 deleterious_low_confidence(0.03) benign(0.144) TCGA-CR-7367-01 5 140346785 140346785 C G PCDHAC2 Nonsense_Mutation p.S145* 0.22 TCGA-CR-7367-01 5 140572211 140572211 G T PCDHB10 Missense_Mutation p.G29V 0.16 deleterious_low_confidence(0.03) benign(0.028) TCGA-CR-7367-01 5 149676799 149676799 C T ARSI Missense_Mutation p.R563K 0.15 tolerated_low_confidence(0.17) benign(0.016) TCGA-CR-7367-01 5 31323025 31323025 C T CDH6 Silent p.D661D 0.15 TCGA-CR-7367-01 5 38933399 38933399 T C OSMR Silent p.S931S 0.10 TCGA-CR-7367-01 5 55407004 55407004 G T ANKRD55 Missense_Mutation p.P524H 0.11 deleterious_low_confidence(0.04) benign(0.235) TCGA-CR-7367-01 5 70898414 70898414 G A MCCC2 Silent p.R155R 0.12 TCGA-CR-7367-01 5 79282892 79282892 G T MTX3 Missense_Mutation p.A146E 0.28 deleterious(0) probably_damaging(0.993) TCGA-CR-7367-01 5 9066574 9066574 C T SEMA5A Missense_Mutation p.R753Q 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7367-01 6 100895160 100895160 C T SIM1 Missense_Mutation p.V328I 0.11 tolerated(0.07) possibly_damaging(0.904) TCGA-CR-7367-01 6 133050063 133050063 G A VNN3 Silent p.N118N 0.38 TCGA-CR-7367-01 6 155581464 155581464 T C TFB1M Missense_Mutation p.E246G 0.07 deleterious(0) probably_damaging(1) TCGA-CR-7367-01 6 26240858 26240858 G T HIST1H4F Missense_Mutation p.D69Y 0.53 deleterious(0.01) possibly_damaging(0.861) TCGA-CR-7367-01 6 27840062 27840062 G A HIST1H3I Missense_Mutation p.S11F 0.11 deleterious_low_confidence(0.01) benign(0.033) TCGA-CR-7367-01 6 33653966 33653966 G A ITPR3 Missense_Mutation p.G1935D 0.21 tolerated(0.25) benign(0.005) TCGA-CR-7367-01 6 43304974 43304974 C T ZNF318 Missense_Mutation p.M2254I 0.31 benign(0.002) TCGA-CR-7367-01 6 56495121 56495121 G T DST Silent p.L864L 0.15 TCGA-CR-7367-01 6 96651372 96651372 G C FUT9 Missense_Mutation p.S114T 0.10 tolerated(0.25) benign(0.063) TCGA-CR-7367-01 7 11485699 11485699 C A THSD7A Missense_Mutation p.C1018F 0.35 deleterious(0) probably_damaging(0.999) TCGA-CR-7367-01 7 133160110 133160110 A T EXOC4 Missense_Mutation p.K404I 0.09 deleterious(0.01) possibly_damaging(0.898) TCGA-CR-7367-01 7 138583773 138583773 G A KIAA1549 Silent p.L1259L 0.10 TCGA-CR-7367-01 7 139715537 139715537 C A TBXAS1 Missense_Mutation p.A461E 0.09 deleterious(0.01) possibly_damaging(0.833) TCGA-CR-7367-01 7 139724438 139724438 C T PARP12 Silent p.Q676Q 0.16 TCGA-CR-7367-01 7 142612693 142612693 G A TRPV5 Silent p.L390L 0.10 TCGA-CR-7367-01 7 154738231 154738231 T G PAXIP1 Silent p.R1042R 0.06 TCGA-CR-7367-01 7 38765891 38765891 A C VPS41 Silent p.A840A 0.41 TCGA-CR-7367-01 7 53104113 53104113 A T POM121L12 Missense_Mutation p.D250V 0.17 tolerated(0.13) probably_damaging(0.972) TCGA-CR-7367-01 7 64438853 64438853 A T ZNF117 Missense_Mutation p.C366S 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-CR-7367-01 7 86416016 86416016 G A GRM3 Nonsense_Mutation p.W303* 0.18 TCGA-CR-7367-01 7 93555441 93555441 A T GNG11 Missense_Mutation p.E45D 0.20 deleterious(0.04) probably_damaging(0.951) TCGA-CR-7367-01 8 113236938 113236938 C T CSMD3 3'UTR 0.15 TCGA-CR-7367-01 8 113241018 113241018 A G CSMD3 Missense_Mutation p.F3644S 0.53 deleterious(0) benign(0.222) TCGA-CR-7367-01 8 141570572 141570572 C T AGO2 Missense_Mutation p.E186K 0.38 tolerated(0.88) benign(0.015) TCGA-CR-7367-01 8 30977861 30977861 G T WRN Nonsense_Mutation p.E851* 0.14 TCGA-CR-7367-01 8 39587478 39587478 T C ADAM18 3'UTR 0.31 TCGA-CR-7367-01 8 52284568 52284568 C A PXDNL Missense_Mutation p.V1256L 0.50 deleterious(0.02) benign(0.327) TCGA-CR-7367-01 8 52284569 52284569 C A PXDNL Silent p.R1255R 0.46 TCGA-CR-7367-01 8 92401664 92401664 G A SLC26A7 Missense_Mutation p.E592K 0.34 deleterious(0.01) benign(0.297) TCGA-CR-7367-01 9 115652267 115652267 G A SLC46A2 Missense_Mutation p.S232L 0.22 tolerated(0.15) benign(0.336) TCGA-CR-7367-01 9 119976974 119976974 C A ASTN2 Silent p.A226A 0.46 TCGA-CR-7367-01 9 134404963 134404963 C G UCK1 Missense_Mutation p.D98H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7367-01 9 137017113 137017113 G A WDR5 Nonsense_Mutation p.W198* 0.10 TCGA-CR-7367-01 9 38615682 38615682 T C ANKRD18A Missense_Mutation p.N135S 0.35 deleterious(0) probably_damaging(0.982) TCGA-CR-7367-01 9 99329078 99329078 C T CDC14B Intron 0.47 TCGA-CR-7367-01 X 103268089 103268089 T C H2BFWT Silent p.K48K 0.39 TCGA-CR-7367-01 X 11207007 11207007 T C ARHGAP6 Silent p.K306K 0.41 TCGA-CR-7367-01 X 145109371 145109371 G T MIR891A RNA 0.27 TCGA-CR-7367-01 X 49957554 49957554 G A AKAP4 Missense_Mutation p.H604Y 0.37 tolerated(0.5) possibly_damaging(0.461) TCGA-CR-7367-01 X 53240037 53240038 - A KDM5C Frame_Shift_Ins p.E468Dfs*49 0.24 TCGA-CR-7368-01 10 112356208 112356208 G A SMC3 Silent p.R672R 0.35 TCGA-CR-7368-01 10 131641455 131641455 C T EBF3 Silent p.L371L 0.29 TCGA-CR-7368-01 10 135176399 135176399 C G ECHS1 Missense_Mutation p.K282N 0.05 deleterious(0.01) probably_damaging(0.972) TCGA-CR-7368-01 10 26789781 26789781 A G APBB1IP Missense_Mutation p.D65G 0.21 deleterious(0) probably_damaging(0.998) TCGA-CR-7368-01 10 27459563 27459563 G A MASTL Missense_Mutation p.D559N 0.22 deleterious(0.02) benign(0.275) TCGA-CR-7368-01 10 33197461 33197462 CT - ITGB1 Frame_Shift_Del p.E722Vfs*37 0.20 TCGA-CR-7368-01 10 5956205 5956205 C T FBXO18 Nonsense_Mutation p.Q508* 0.09 TCGA-CR-7368-01 10 62029966 62029966 T C ANK3 Missense_Mutation p.M146V 0.35 probably_damaging(0.981) TCGA-CR-7368-01 10 63816914 63816914 G C ARID5B Missense_Mutation p.K295N 0.46 deleterious(0.05) probably_damaging(0.977) TCGA-CR-7368-01 10 69699408 69699408 G A HERC4 Silent p.S844S 0.21 TCGA-CR-7368-01 10 71000451 71000451 G A HKDC1 Missense_Mutation p.G212E 0.42 deleterious(0) probably_damaging(0.995) TCGA-CR-7368-01 10 75003029 75003029 C G DNAJC9 3'UTR 0.13 TCGA-CR-7368-01 10 91143656 91143656 G A IFIT1B Missense_Mutation p.G196R 0.17 tolerated(0.65) benign(0.002) TCGA-CR-7368-01 10 93272230 93272230 C T HECTD2 3'UTR 0.34 TCGA-CR-7368-01 11 107676147 107676147 C T SLC35F2 Silent p.L223L 0.09 TCGA-CR-7368-01 11 116729228 116729228 G C SIK3 Missense_Mutation p.Q879E 0.10 tolerated_low_confidence(0.05) benign(0.083) TCGA-CR-7368-01 11 123814028 123814028 C A OR6T1 Missense_Mutation p.G173V 0.55 tolerated(1) benign(0.003) TCGA-CR-7368-01 11 1270495 1270495 G C MUC5B Missense_Mutation p.E4129Q 0.17 unknown(0) TCGA-CR-7368-01 11 12785959 12785959 A T TEAD1 Missense_Mutation p.L60F 0.35 deleterious(0.03) probably_damaging(0.987) TCGA-CR-7368-01 11 129780421 129780421 G A PRDM10 Missense_Mutation p.S1042F 0.18 deleterious_low_confidence(0) benign(0.323) TCGA-CR-7368-01 11 14907463 14907463 T A CYP2R1 Missense_Mutation p.I76F 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7368-01 11 22248857 22248857 G C ANO5 Missense_Mutation p.D125H 0.28 deleterious(0) probably_damaging(0.94) TCGA-CR-7368-01 11 46894853 46894853 G C LRP4 Intron 0.14 TCGA-CR-7368-01 11 48238839 48238839 G A OR4B1 Missense_Mutation p.V160I 0.33 tolerated(0.31) benign(0.006) TCGA-CR-7368-01 11 55653074 55653074 A C TRIM51 Missense_Mutation p.K57T 0.22 tolerated(0.17) benign(0.084) TCGA-CR-7368-01 11 55735780 55735780 G C OR10AG1 Missense_Mutation p.L54V 0.16 deleterious(0.01) possibly_damaging(0.619) TCGA-CR-7368-01 11 62416825 62416825 G A INTS5 Missense_Mutation p.L243F 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-CR-7368-01 11 65620839 65620839 G A SNX32 3'UTR 0.10 TCGA-CR-7368-01 11 66191403 66191403 G A NPAS4 Missense_Mutation p.E348K 0.13 deleterious(0.02) benign(0.014) TCGA-CR-7368-01 11 76709867 76709867 T C ACER3 Splice_Site p.X166_splice 0.21 TCGA-CR-7368-01 11 92624013 92624013 G A FAT3 Missense_Mutation p.E4502K 0.37 benign(0.014) TCGA-CR-7368-01 11 94906413 94906413 G C SESN3 3'UTR 0.15 TCGA-CR-7368-01 12 111785464 111785464 G A CUX2 Missense_Mutation p.E1266K 0.25 deleterious(0) probably_damaging(0.947) TCGA-CR-7368-01 12 120882720 120882720 C T TRIAP1 Silent p.L62L 0.16 TCGA-CR-7368-01 12 122794385 122794385 G T CLIP1 Nonsense_Mutation p.S1173* 0.30 TCGA-CR-7368-01 12 15134501 15134501 G A PDE6H 3'UTR 0.25 TCGA-CR-7368-01 12 25702360 25702360 A T IFLTD1 Nonsense_Mutation p.Y70* 0.35 TCGA-CR-7368-01 12 26217552 26217552 C G RASSF8 Silent p.L75L 0.16 TCGA-CR-7368-01 12 32135856 32135856 C T KIAA1551 Missense_Mutation p.S656L 0.09 deleterious(0) probably_damaging(0.974) TCGA-CR-7368-01 12 45173642 45173642 C T NELL2 Missense_Mutation p.D217N 0.09 deleterious(0) probably_damaging(0.928) TCGA-CR-7368-01 12 49225034 49225034 G C DDX23 Silent p.L710L 0.11 TCGA-CR-7368-01 12 52099309 52099309 G A SCN8A Missense_Mutation p.E415K 0.11 deleterious(0) probably_damaging(0.983) TCGA-CR-7368-01 12 81112735 81112735 C A MYF5 Missense_Mutation p.Q225K 0.30 tolerated(0.77) benign(0.035) TCGA-CR-7368-01 13 60557957 60557957 C A DIAPH3 Missense_Mutation p.D476Y 0.32 deleterious(0) probably_damaging(1) TCGA-CR-7368-01 14 105413766 105413767 AG - AHNAK2 Frame_Shift_Del p.S2674* 0.24 TCGA-CR-7368-01 14 105418065 105418065 G A AHNAK2 Silent p.G1241G 0.67 TCGA-CR-7368-01 14 105418066 105418066 C A AHNAK2 Missense_Mutation p.G1241V 0.67 possibly_damaging(0.556) TCGA-CR-7368-01 14 22294136 22294136 C T TRAV10 Silent p.N80N 0.26 TCGA-CR-7368-01 14 23945265 23945265 G A NGDN Missense_Mutation p.E150K 0.07 tolerated(0.3) benign(0.352) TCGA-CR-7368-01 14 57938040 57938040 A G C14orf105 3'UTR 0.18 TCGA-CR-7368-01 14 93118912 93118912 T A RIN3 Silent p.S506S 0.34 TCGA-CR-7368-01 14 96807957 96807957 C T ATG2B Missense_Mutation p.E276K 0.16 deleterious(0.02) benign(0.443) TCGA-CR-7368-01 15 23812217 23812217 C A MKRN3 Missense_Mutation p.P430T 0.25 tolerated(0.08) benign(0.084) TCGA-CR-7368-01 15 28769152 28769152 C T GOLGA8G Silent p.E448E 0.28 TCGA-CR-7368-01 15 43622164 43622164 G A LCMT2 Missense_Mutation p.A175V 0.44 deleterious(0.03) benign(0.192) TCGA-CR-7368-01 15 52446255 52446255 C T GNB5 Missense_Mutation p.R86Q 0.23 tolerated(0.39) benign(0.013) TCGA-CR-7368-01 15 52609388 52609388 G C MYO5A Missense_Mutation p.R1731G 0.11 deleterious(0.02) benign(0.036) TCGA-CR-7368-01 15 75105240 75105240 C G LMAN1L Silent p.L15L 0.35 TCGA-CR-7368-01 15 75105354 75105354 C T LMAN1L Silent p.F53F 0.43 TCGA-CR-7368-01 15 91422758 91422758 C G FURIN Missense_Mutation p.L380V 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-CR-7368-01 15 92981732 92981732 C T ST8SIA2 Missense_Mutation p.S147L 0.07 probably_damaging(0.978) TCGA-CR-7368-01 16 27720105 27720105 C T KIAA0556 Missense_Mutation p.S490L 0.10 tolerated(0.16) benign(0.002) TCGA-CR-7368-01 16 31498885 31498885 C G SLC5A2 Missense_Mutation p.F230L 0.04 tolerated(0.69) benign(0.029) TCGA-CR-7368-01 16 55601232 55601232 A G CAPNS2 Silent p.Q188Q 0.35 TCGA-CR-7368-01 16 81077197 81077197 G C ATMIN Missense_Mutation p.S365T 0.13 tolerated(0.31) benign(0.02) TCGA-CR-7368-01 16 87885358 87885359 - A SLC7A5 Frame_Shift_Ins p.L213Pfs*11 0.30 TCGA-CR-7368-01 16 89849296 89849296 C T FANCA Missense_Mutation p.D533N 0.16 deleterious(0.03) possibly_damaging(0.539) TCGA-CR-7368-01 17 18694255 18694255 A G TVP23B Missense_Mutation p.I48V 0.42 tolerated(0.17) benign(0.015) TCGA-CR-7368-01 17 27442707 27442707 C T MYO18A Silent p.E734E 0.46 TCGA-CR-7368-01 17 39671692 39671692 C T KRT15 Intron 0.17 TCGA-CR-7368-01 17 43923106 43923106 C T SPPL2C Silent p.V278V 0.05 TCGA-CR-7368-01 17 48432263 48432263 G C XYLT2 Missense_Mutation p.D285H 0.07 deleterious(0) possibly_damaging(0.459) TCGA-CR-7368-01 17 5114066 5114066 C T SCIMP 3'UTR 0.29 TCGA-CR-7368-01 17 7127131 7127131 G A ACADVL Splice_Site p.X447_splice 0.34 TCGA-CR-7368-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7368-01 17 80790225 80790226 - A ZNF750 Frame_Shift_Ins p.E36* 0.44 TCGA-CR-7368-01 17 8701980 8701980 G A MFSD6L Silent p.F153F 0.10 TCGA-CR-7368-01 18 29104495 29104495 C T DSG2 Nonsense_Mutation p.Q259* 0.12 TCGA-CR-7368-01 18 480723 480723 G A COLEC12 Silent p.F14F 0.18 TCGA-CR-7368-01 18 59221721 59221721 C T CDH20 Silent p.A733A 0.08 TCGA-CR-7368-01 19 10893634 10893635 - GGCTACATT DNM2 Splice_Site p.X231_splice 0.16 TCGA-CR-7368-01 19 11925249 11925249 C T ZNF440 5'UTR 0.15 TCGA-CR-7368-01 19 12878702 12878702 G A HOOK2 Missense_Mutation p.R411W 0.48 deleterious(0) probably_damaging(0.999) TCGA-CR-7368-01 19 14518725 14518725 G A CD97 Silent p.R794R 0.14 TCGA-CR-7368-01 19 15728925 15728925 G C AD000091.2 5'Flank 0.13 TCGA-CR-7368-01 19 17488104 17488104 G A PLVAP 5'UTR 0.25 TCGA-CR-7368-01 19 30505952 30505952 T - URI1 Frame_Shift_Del p.A529Pfs*21 0.18 TCGA-CR-7368-01 19 40368715 40368715 G A FCGBP Silent p.G4211G 0.09 TCGA-CR-7368-01 19 4101137 4101137 C G MAP2K2 Silent p.V195V 0.29 TCGA-CR-7368-01 19 4511815 4511815 C T PLIN4 Silent p.V705V 0.05 TCGA-CR-7368-01 19 50266447 50266447 C T TSKS Missense_Mutation p.D20N 0.17 deleterious(0) probably_damaging(0.998) TCGA-CR-7368-01 19 55559839 55559839 G C RDH13 Silent p.L172L 0.06 TCGA-CR-7368-01 19 56369423 56369423 C G NLRP4 Missense_Mutation p.Q222E 0.04 tolerated(0.18) benign(0.085) TCGA-CR-7368-01 19 5754220 5754220 G A CATSPERD Silent p.S414S 0.31 TCGA-CR-7368-01 19 58152803 58152803 G A ZNF211 Missense_Mutation p.E382K 0.18 tolerated(0.15) benign(0.346) TCGA-CR-7368-01 19 58697098 58697098 A T ZNF274 Missense_Mutation p.D18V 0.40 deleterious(0) probably_damaging(0.998) TCGA-CR-7368-01 19 6309843 6309843 G A ACER1 Missense_Mutation p.S118F 0.15 tolerated(0.71) benign(0.006) TCGA-CR-7368-01 19 7755042 7755042 C T FCER2 Intron 0.10 TCGA-CR-7368-01 19 7805838 7805838 T - CD209 3'UTR 0.26 TCGA-CR-7368-01 19 8618294 8618294 C G MYO1F Silent p.V118V 0.07 TCGA-CR-7368-01 19 9528555 9528555 A T ZNF266 Missense_Mutation p.S22T 0.34 deleterious(0.01) benign(0.006) TCGA-CR-7368-01 1 110151357 110151357 C T GNAT2 Missense_Mutation p.M119I 0.29 tolerated(0.19) possibly_damaging(0.677) TCGA-CR-7368-01 1 110921808 110921808 C T SLC16A4 Missense_Mutation p.E233K 0.31 tolerated(0.53) benign(0.045) TCGA-CR-7368-01 1 11249656 11249656 C G ANGPTL7 Nonsense_Mutation p.S7* 0.11 TCGA-CR-7368-01 1 12337106 12337106 G A VPS13D Missense_Mutation p.G1154E 0.05 benign(0) TCGA-CR-7368-01 1 150235226 150235226 T G CA14 Silent p.A173A 0.37 TCGA-CR-7368-01 1 151021004 151021004 C A C1orf56 Missense_Mutation p.H227Q 0.20 tolerated(0.96) benign(0.001) TCGA-CR-7368-01 1 152324824 152324824 G A FLG2 Missense_Mutation p.S1813L 0.28 probably_damaging(0.998) TCGA-CR-7368-01 1 161166083 161166083 C A ADAMTS4 Missense_Mutation p.G323V 0.14 deleterious(0) probably_damaging(1) TCGA-CR-7368-01 1 162749994 162749994 C G DDR2 Missense_Mutation p.F842L 0.07 deleterious(0) probably_damaging(0.999) TCGA-CR-7368-01 1 167487781 167487781 C A CD247 5'Flank 0.27 TCGA-CR-7368-01 1 17609457 17609457 C G PADI3 Silent p.L626L 0.11 TCGA-CR-7368-01 1 196658599 196658599 G A CFH Silent p.E338E 0.15 TCGA-CR-7368-01 1 198509756 198509756 G A ATP6V1G3 Missense_Mutation p.H9Y 0.37 deleterious(0) possibly_damaging(0.681) TCGA-CR-7368-01 1 200549426 200549426 C G KIF14 Missense_Mutation p.E1141Q 0.27 deleterious(0.02) probably_damaging(0.939) TCGA-CR-7368-01 1 201868676 201868676 T G LMOD1 Missense_Mutation p.K489Q 0.43 benign(0.002) TCGA-CR-7368-01 1 207286390 207286390 C T C4BPA Missense_Mutation p.P7L 0.32 deleterious(0.05) possibly_damaging(0.888) TCGA-CR-7368-01 1 207966940 207966940 G C CD46 3'UTR 0.14 TCGA-CR-7368-01 1 236995364 236995364 G T MTR Missense_Mutation p.A392S 0.11 tolerated(0.26) benign(0.007) TCGA-CR-7368-01 1 242045251 242045251 C T EXO1 Nonsense_Mutation p.Q715* 0.07 TCGA-CR-7368-01 1 248343777 248343777 T C OR2M2 Missense_Mutation p.F164L 0.39 tolerated(1) benign(0.004) TCGA-CR-7368-01 1 248616677 248616677 G A OR2T2 Silent p.T193T 0.28 TCGA-CR-7368-01 1 41235027 41235027 G A NFYC Splice_Site p.X296_splice 0.08 TCGA-CR-7368-01 1 44137205 44137205 G A KDM4A Missense_Mutation p.E465K 0.10 tolerated(0.17) benign(0.099) TCGA-CR-7368-01 1 45243773 45243773 G A RPS8 Silent p.E163E 0.20 TCGA-CR-7368-01 1 65858191 65858191 G T DNAJC6 Nonsense_Mutation p.E516* 0.31 TCGA-CR-7368-01 1 86852635 86852635 C G ODF2L Missense_Mutation p.D26H 0.09 tolerated(1) benign(0.002) TCGA-CR-7368-01 1 94342038 94342038 C T DNTTIP2 Missense_Mutation p.D485N 0.33 tolerated(0.08) benign(0.347) TCGA-CR-7368-01 20 17937598 17937598 G C SNX5 Silent p.V45V 0.24 TCGA-CR-7368-01 20 25038407 25038407 G A ACSS1 Missense_Mutation p.S111F 0.12 deleterious(0.01) benign(0.073) TCGA-CR-7368-01 20 25604531 25604531 G A NANP Silent p.I18I 0.12 TCGA-CR-7368-01 20 33045206 33045206 G A ITCH Missense_Mutation p.D449N 0.15 deleterious(0) possibly_damaging(0.889) TCGA-CR-7368-01 20 35521289 35521289 T C SAMHD1 3'UTR 0.27 TCGA-CR-7368-01 20 37209995 37209995 G A ADIG Nonsense_Mutation p.W34* 0.47 TCGA-CR-7368-01 20 39316788 39316788 C T MAFB Missense_Mutation p.E235K 0.24 deleterious(0) benign(0.133) TCGA-CR-7368-01 20 47863847 47863847 G A ZNFX1 Missense_Mutation p.A1905V 0.30 deleterious(0) probably_damaging(0.998) TCGA-CR-7368-01 20 62871203 62871203 G T MYT1 Missense_Mutation p.G1062C 0.14 probably_damaging(1) TCGA-CR-7368-01 21 27136626 27136626 C T GABPA Missense_Mutation p.S303L 0.40 deleterious(0.02) benign(0.014) TCGA-CR-7368-01 21 31744345 31744345 G A KRTAP13-2 Missense_Mutation p.P63S 0.35 deleterious(0.02) possibly_damaging(0.901) TCGA-CR-7368-01 22 22869589 22869589 T C ZNF280A Silent p.E122E 0.39 TCGA-CR-7368-01 22 38323542 38323542 G A MICALL1 Silent p.P530P 0.38 TCGA-CR-7368-01 22 39497505 39497505 C T APOBEC3H Silent p.F138F 0.21 TCGA-CR-7368-01 2 113251798 113251798 C G TTL Silent p.L105L 0.18 TCGA-CR-7368-01 2 136528186 136528186 A G UBXN4 Missense_Mutation p.M235V 0.35 deleterious(0.04) benign(0.011) TCGA-CR-7368-01 2 153575279 153575279 A - ARL6IP6 Frame_Shift_Del p.C48Afs*83 0.30 TCGA-CR-7368-01 2 163055300 163055300 C T FAP Missense_Mutation p.D457N 0.32 tolerated(0.3) benign(0.001) TCGA-CR-7368-01 2 168103755 168103755 T G XIRP2 Silent p.A1951A 0.16 TCGA-CR-7368-01 2 179635006 179635006 C G TTN Missense_Mutation p.E2808Q 0.15 TCGA-CR-7368-01 2 18113159 18113159 T G KCNS3 Missense_Mutation p.M295R 0.33 deleterious(0) probably_damaging(0.938) TCGA-CR-7368-01 2 189873853 189873853 A G COL3A1 Silent p.G1243G 0.04 TCGA-CR-7368-01 2 190559831 190559831 C G ANKAR Missense_Mutation p.Q478E 0.07 tolerated(0.07) benign(0.026) TCGA-CR-7368-01 2 198949886 198949886 G C PLCL1 Missense_Mutation p.D549H 0.32 tolerated(0.06) benign(0.015) TCGA-CR-7368-01 2 203157551 203157551 C T NOP58 Nonsense_Mutation p.R278* 0.06 TCGA-CR-7368-01 2 220354138 220354138 C T SPEG Missense_Mutation p.P2800S 0.24 possibly_damaging(0.827) TCGA-CR-7368-01 2 234545520 234545520 G C UGT1A10 Missense_Mutation p.D118H 0.10 tolerated(0.13) possibly_damaging(0.756) TCGA-CR-7368-01 2 239261811 239261811 C G TRAF3IP1 Intron 0.10 TCGA-CR-7368-01 2 37126701 37126701 C T STRN Missense_Mutation p.D254N 0.08 tolerated(0.09) benign(0.011) TCGA-CR-7368-01 2 44079964 44079964 C T ABCG8 Silent p.I307I 0.10 TCGA-CR-7368-01 2 44102445 44102445 C T ABCG8 Missense_Mutation p.A550V 0.27 deleterious(0) probably_damaging(0.916) TCGA-CR-7368-01 2 46851371 46851371 A - CRIPT 3'UTR 0.19 TCGA-CR-7368-01 2 61431396 61431396 T C USP34 Missense_Mutation p.S3127G 0.38 tolerated(0.1) benign(0.013) TCGA-CR-7368-01 2 80530075 80530075 G T LRRTM1 Missense_Mutation p.N290K 0.29 deleterious(0) probably_damaging(0.996) TCGA-CR-7368-01 3 119246643 119246643 C T CD80 Missense_Mutation p.R281K 0.11 tolerated(0.4) unknown(0) TCGA-CR-7368-01 3 127379318 127379318 G A PODXL2 Missense_Mutation p.M149I 0.21 tolerated(0.38) benign(0.048) TCGA-CR-7368-01 3 132196904 132196904 C T DNAJC13 Missense_Mutation p.L877F 0.18 deleterious(0.01) possibly_damaging(0.866) TCGA-CR-7368-01 3 1363508 1363508 C G CNTN6 Silent p.L312L 0.47 TCGA-CR-7368-01 3 15276644 15276644 G C CAPN7 Missense_Mutation p.E467Q 0.18 tolerated(0.38) benign(0.117) TCGA-CR-7368-01 3 18390856 18390856 G C SATB1 Missense_Mutation p.L732V 0.05 tolerated(1) benign(0.004) TCGA-CR-7368-01 3 186507820 186507820 C G RFC4 Missense_Mutation p.E344Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-CR-7368-01 3 186507847 186507847 C T RFC4 Missense_Mutation p.D335N 0.12 tolerated(0.1) benign(0.186) TCGA-CR-7368-01 3 43344765 43344765 C T SNRK Nonsense_Mutation p.R24* 0.44 TCGA-CR-7368-01 3 47957727 47957727 G A MAP4 Silent p.L530L 0.51 TCGA-CR-7368-01 3 64085380 64085380 T A PRICKLE2 Missense_Mutation p.I628F 0.51 tolerated(0.7) benign(0.019) TCGA-CR-7368-01 4 100474995 100474995 C T TRMT10A Missense_Mutation p.D198N 0.11 deleterious(0.04) probably_damaging(0.988) TCGA-CR-7368-01 4 128878725 128878725 C G MFSD8 Missense_Mutation p.E29Q 0.13 tolerated(0.59) benign(0.006) TCGA-CR-7368-01 4 13606027 13606027 C T BOD1L1 Missense_Mutation p.A833T 0.27 benign(0.021) TCGA-CR-7368-01 4 153897181 153897181 G A FHDC1 Missense_Mutation p.R913K 0.14 tolerated(0.19) benign(0.214) TCGA-CR-7368-01 4 155157796 155157796 A T DCHS2 Missense_Mutation p.Y2215N 0.05 deleterious(0) probably_damaging(0.99) TCGA-CR-7368-01 4 177105838 177105838 T C SPATA4 3'UTR 0.40 TCGA-CR-7368-01 4 5811288 5811288 G A EVC Missense_Mutation p.R911Q 0.10 deleterious(0.01) benign(0.155) TCGA-CR-7368-01 4 68543386 68543386 T A UBA6 Silent p.T136T 0.40 TCGA-CR-7368-01 4 71099858 71099858 C T FDCSP Missense_Mutation p.P71L 0.33 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-CR-7368-01 4 76572243 76572243 C G G3BP2 Missense_Mutation p.D343H 0.15 deleterious(0.01) probably_damaging(1) TCGA-CR-7368-01 4 87671658 87671658 G A PTPN13 Missense_Mutation p.E896K 0.04 tolerated(0.1) possibly_damaging(0.769) TCGA-CR-7368-01 5 140175902 140175902 C T PCDHA2 Silent p.N451N 0.48 TCGA-CR-7368-01 5 140529865 140529865 G C PCDHB6 Missense_Mutation p.K9N 0.20 tolerated_low_confidence(0.06) benign(0.017) TCGA-CR-7368-01 5 140768638 140768638 C G PCDHGB4 Nonsense_Mutation p.S396* 0.07 TCGA-CR-7368-01 5 141353158 141353158 C T RNF14 Missense_Mutation p.S2L 0.17 deleterious(0.01) benign(0.295) TCGA-CR-7368-01 5 148619423 148619423 C T ABLIM3 Silent p.S392S 0.49 TCGA-CR-7368-01 5 149516593 149516593 C T PDGFRB Silent p.A6A 0.12 TCGA-CR-7368-01 5 161322867 161322867 C A GABRA1 Missense_Mutation p.P351Q 0.46 tolerated(0.29) probably_damaging(0.999) TCGA-CR-7368-01 5 180472573 180472573 C T BTNL9 Silent p.L28L 0.10 TCGA-CR-7368-01 5 36251470 36251470 G A RANBP3L Silent p.C458C 0.34 TCGA-CR-7368-01 5 38407099 38407099 A G EGFLAM Missense_Mutation p.K333R 0.21 tolerated(0.4) benign(0.003) TCGA-CR-7368-01 5 38510674 38510674 C T LIFR Missense_Mutation p.E295K 0.06 tolerated(0.48) benign(0.002) TCGA-CR-7368-01 5 38944623 38944623 C T RICTOR Missense_Mutation p.R1613H 0.24 deleterious(0) probably_damaging(0.967) TCGA-CR-7368-01 5 52371079 52371079 A T ITGA2 Missense_Mutation p.N924Y 0.23 deleterious(0) probably_damaging(1) TCGA-CR-7368-01 5 68616157 68616157 C G CCDC125 Missense_Mutation p.E71Q 0.49 tolerated(0.31) benign(0.349) TCGA-CR-7368-01 5 74879221 74879221 C G POLK Missense_Mutation p.I346M 0.33 tolerated(0.06) possibly_damaging(0.903) TCGA-CR-7368-01 5 75490760 75490760 C T SV2C Silent p.L199L 0.10 TCGA-CR-7368-01 5 7867461 7867461 C T FASTKD3 Missense_Mutation p.E246K 0.07 tolerated(1) benign(0.005) TCGA-CR-7368-01 5 7867642 7867642 C G FASTKD3 Silent p.L185L 0.07 TCGA-CR-7368-01 5 7867698 7867698 C G FASTKD3 Missense_Mutation p.E167Q 0.07 tolerated(0.06) benign(0.196) TCGA-CR-7368-01 5 79030703 79030703 A G CMYA5 Missense_Mutation p.K2039E 0.50 benign(0.001) TCGA-CR-7368-01 5 9052056 9052056 G T SEMA5A Missense_Mutation p.P925H 0.23 tolerated(0.06) probably_damaging(1) TCGA-CR-7368-01 6 105824004 105824004 G C PREP Silent p.L127L 0.31 TCGA-CR-7368-01 6 10695191 10695191 C G PAK1IP1 5'UTR 0.41 TCGA-CR-7368-01 6 10894396 10894396 G C SYCP2L Missense_Mutation p.E99Q 0.03 tolerated(0.22) benign(0.093) TCGA-CR-7368-01 6 111697577 111697577 C T REV3L Missense_Mutation p.D661N 0.26 tolerated_low_confidence(0.42) benign(0.011) TCGA-CR-7368-01 6 112035585 112035585 A T FYN Missense_Mutation p.F103L 0.07 tolerated(0.06) probably_damaging(0.998) TCGA-CR-7368-01 6 114378934 114378934 G A HS3ST5 Silent p.I176I 0.15 TCGA-CR-7368-01 6 138628503 138628503 G C KIAA1244 Missense_Mutation p.M1314I 0.13 tolerated(0.3) benign(0.003) TCGA-CR-7368-01 6 152770688 152770688 C G SYNE1 Missense_Mutation p.E1162Q 0.33 benign(0.003) TCGA-CR-7368-01 6 160241557 160241557 G A PNLDC1 3'UTR 0.12 TCGA-CR-7368-01 6 26033738 26033738 G C HIST1H2AB Missense_Mutation p.S20C 0.04 deleterious_low_confidence(0) unknown(0) TCGA-CR-7368-01 6 28215883 28215883 C G ZKSCAN4 Missense_Mutation p.D206H 0.30 deleterious(0.03) benign(0.1) TCGA-CR-7368-01 6 32169064 32169064 C G NOTCH4 Silent p.L1323L 0.09 TCGA-CR-7368-01 6 34512160 34512160 G A SPDEF Missense_Mutation p.R25W 0.11 tolerated_low_confidence(0.19) possibly_damaging(0.8) TCGA-CR-7368-01 6 39283006 39283006 C G KCNK16 Missense_Mutation p.R288T 0.29 deleterious_low_confidence(0) benign(0.402) TCGA-CR-7368-01 6 41753185 41753185 G C PRICKLE4 Silent p.L163L 0.09 TCGA-CR-7368-01 6 51890330 51890330 C T PKHD1 Silent p.S1426S 0.19 TCGA-CR-7368-01 6 57061369 57061369 C T RAB23 Missense_Mutation p.D93N 0.08 deleterious(0.02) probably_damaging(1) TCGA-CR-7368-01 6 74516607 74516607 C G CD109 Missense_Mutation p.P1001A 0.11 tolerated(0.08) benign(0.034) TCGA-CR-7368-01 6 76728432 76728432 C T IMPG1 Intron 0.37 TCGA-CR-7368-01 6 87969609 87969609 G C ZNF292 Missense_Mutation p.E2088Q 0.13 tolerated(0.06) probably_damaging(0.971) TCGA-CR-7368-01 6 88853849 88853849 C A CNR1 Missense_Mutation p.C382F 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-CR-7368-01 7 103017279 103017279 A G SLC26A5 Missense_Mutation p.Y673H 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-CR-7368-01 7 117431659 117431659 T A CTTNBP2 Missense_Mutation p.T531S 0.34 tolerated(0.93) benign(0.215) TCGA-CR-7368-01 7 127964661 127964661 C G RBM28 Missense_Mutation p.K430N 0.11 tolerated(0.11) probably_damaging(0.997) TCGA-CR-7368-01 7 129028933 129028933 C T AHCYL2 Missense_Mutation p.S171L 0.27 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-CR-7368-01 7 138774437 138774437 A T ZC3HAV1 Missense_Mutation p.L126H 0.68 deleterious(0) probably_damaging(0.984) TCGA-CR-7368-01 7 152345718 152345718 T C XRCC2 3'UTR 0.35 TCGA-CR-7368-01 7 20689665 20689665 C G ABCB5 Silent p.L409L 0.19 TCGA-CR-7368-01 7 86817567 86817567 C T DMTF1 Missense_Mutation p.S454F 0.32 tolerated(0.69) benign(0.165) TCGA-CR-7368-01 7 87339931 87339931 G C RUNDC3B Missense_Mutation p.E157Q 0.28 deleterious(0) probably_damaging(0.984) TCGA-CR-7368-01 7 88424117 88424117 A T C7orf62 Missense_Mutation p.L47H 0.29 deleterious(0) probably_damaging(0.988) TCGA-CR-7368-01 7 94043559 94043559 C A COL1A2 Missense_Mutation p.A564D 0.18 unknown(0) TCGA-CR-7368-01 7 98256519 98256519 C T NPTX2 Missense_Mutation p.H311Y 0.38 deleterious(0) probably_damaging(1) TCGA-CR-7368-01 8 11172549 11172549 C T MTMR9 Silent p.A363A 0.31 TCGA-CR-7368-01 8 22487967 22487967 G T BIN3 Missense_Mutation p.F95L 0.15 tolerated(0.67) benign(0.007) TCGA-CR-7368-01 8 24771655 24771655 G C NEFM Missense_Mutation p.E117Q 0.18 deleterious(0.02) unknown(0) TCGA-CR-7368-01 8 30038087 30038087 G C DCTN6 Missense_Mutation p.E139Q 0.18 deleterious(0) possibly_damaging(0.643) TCGA-CR-7368-01 8 30402106 30402106 C G RBPMS Missense_Mutation p.P165A 0.05 tolerated(0.25) benign(0.001) TCGA-CR-7368-01 8 30889927 30889927 C T PURG Silent p.E124E 0.13 TCGA-CR-7368-01 8 41834744 41834744 C T KAT6A Missense_Mutation p.G382E 0.08 possibly_damaging(0.621) TCGA-CR-7368-01 8 48973468 48973468 A G UBE2V2 3'UTR 0.42 TCGA-CR-7368-01 8 53569790 53569790 G C RB1CC1 Missense_Mutation p.L867V 0.15 deleterious_low_confidence(0) possibly_damaging(0.5) TCGA-CR-7368-01 8 57025630 57025630 G A MOS Silent p.F304F 0.17 TCGA-CR-7368-01 8 68028195 68028195 A G CSPP1 Missense_Mutation p.E440G 0.31 deleterious(0.03) probably_damaging(0.984) TCGA-CR-7368-01 8 95504890 95504890 T C KIAA1429 Missense_Mutation p.I1600V 0.11 tolerated(0.16) probably_damaging(0.99) TCGA-CR-7368-01 9 125004258 125004258 C G RBM18 Missense_Mutation p.E160Q 0.14 tolerated(0.29) benign(0.069) TCGA-CR-7368-01 9 137623932 137623932 G T COL5A1 Missense_Mutation p.G450C 0.53 probably_damaging(1) TCGA-CR-7368-01 9 139751179 139751179 G A MAMDC4 Missense_Mutation p.E580K 0.29 deleterious(0) possibly_damaging(0.686) TCGA-CR-7368-01 9 21409512 21409512 G C IFNA8 Missense_Mutation p.D113H 0.37 tolerated(1) benign(0.005) TCGA-CR-7368-01 9 35751957 35751957 C T RGP1 Missense_Mutation p.S256L 0.14 deleterious(0.03) benign(0.33) TCGA-CR-7368-01 9 69238279 69238279 T C CBWD6 Missense_Mutation p.T205A 0.24 tolerated(0.2) possibly_damaging(0.472) TCGA-CR-7368-01 9 71606110 71606110 G A PIP5K1B Silent p.L519L 0.08 TCGA-CR-7368-01 9 96291798 96291798 G C FAM120A Missense_Mutation p.R557T 0.18 deleterious(0) probably_damaging(0.938) TCGA-CR-7368-01 9 96320925 96320925 C T FAM120A Missense_Mutation p.R911C 0.16 deleterious(0) possibly_damaging(0.736) TCGA-CR-7368-01 X 130412064 130412064 C T IGSF1 Missense_Mutation p.G701S 0.65 deleterious(0) probably_damaging(1) TCGA-CR-7368-01 X 134426280 134426280 C T ZNF75D Nonsense_Mutation p.W177* 0.06 TCGA-CR-7368-01 X 140270912 140270912 C T LDOC1 Missense_Mutation p.E99K 0.60 tolerated(0.47) benign(0.242) TCGA-CR-7368-01 X 1407734 1407734 G A CSF2RA Silent p.P142P 0.44 TCGA-CR-7368-01 X 149101932 149101932 C T CXorf40B Missense_Mutation p.R54Q 0.63 tolerated(0.21) benign(0.002) TCGA-CR-7368-01 X 15349714 15349714 G A PIGA Silent p.L113L 0.79 TCGA-CR-7368-01 X 19568091 19568091 C T SH3KBP1 Splice_Site p.X498_splice 0.06 TCGA-CR-7368-01 X 23803928 23803928 C A SAT1 Missense_Mutation p.F157L 0.54 tolerated(0.06) benign(0.405) TCGA-CR-7368-01 X 306382 306382 G A PPP2R3B Missense_Mutation p.A302V 0.30 tolerated(0.07) benign(0.053) TCGA-CR-7368-01 X 44870205 44870205 G A KDM6A Splice_Site p.X129_splice 0.42 TCGA-CR-7368-01 X 63555987 63555987 T A MTMR8 Missense_Mutation p.I375L 0.78 tolerated(0.88) benign(0.039) TCGA-CR-7369-01 10 89692794 89692794 A G PTEN Missense_Mutation p.H93R 0.26 deleterious(0.03) probably_damaging(0.92) TCGA-CR-7369-01 11 124189328 124189328 T A OR8D2 Missense_Mutation p.T256S 0.31 tolerated(0.12) benign(0.253) TCGA-CR-7369-01 11 17428479 17428479 C T ABCC8 Missense_Mutation p.A1040T 0.06 tolerated(0.36) benign(0.046) TCGA-CR-7369-01 11 2190937 2190937 G A TH Silent p.L116L 0.31 TCGA-CR-7369-01 11 26734241 26734241 G A SLC5A12 Nonsense_Mutation p.R118* 0.24 TCGA-CR-7369-01 11 43418289 43418289 G T TTC17 Missense_Mutation p.A232S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7369-01 11 6191145 6191145 G A OR52B2 Silent p.L138L 0.15 TCGA-CR-7369-01 12 122018774 122018774 G A KDM2B Missense_Mutation p.P15S 0.18 tolerated_low_confidence(1) possibly_damaging(0.641) TCGA-CR-7369-01 12 50570796 50570796 G A LIMA1 3'UTR 0.26 TCGA-CR-7369-01 12 63544069 63544069 G A AVPR1A Missense_Mutation p.T183M 0.37 tolerated(0.1) possibly_damaging(0.512) TCGA-CR-7369-01 13 103295686 103295686 T C TPP2 Missense_Mutation p.L712P 0.26 deleterious(0) probably_damaging(0.94) TCGA-CR-7369-01 14 24702396 24702396 A C GMPR2 5'UTR 0.04 TCGA-CR-7369-01 14 42360816 42360816 A T LRFN5 Silent p.V583V 0.30 TCGA-CR-7369-01 14 71500712 71500712 G A PCNX Missense_Mutation p.E1245K 0.27 deleterious(0.02) benign(0.036) TCGA-CR-7369-01 15 90168261 90168261 C T TICRR Nonsense_Mutation p.R1574* 0.24 TCGA-CR-7369-01 16 24551988 24551988 A G RBBP6 Missense_Mutation p.Y14C 0.21 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CR-7369-01 17 10293710 10293710 G C MYH8 3'UTR 0.08 TCGA-CR-7369-01 17 63223491 63223491 A - RGS9 Frame_Shift_Del p.K665Rfs*27 0.27 TCGA-CR-7369-01 17 78063685 78063685 T G CCDC40 Splice_Site p.X944_splice 0.21 TCGA-CR-7369-01 18 10691302 10691302 G A PIEZO2 Missense_Mutation p.R2311C 0.27 deleterious(0) benign(0.266) TCGA-CR-7369-01 19 3648623 3648623 C A PIP5K1C Missense_Mutation p.R404M 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7369-01 19 4267629 4267629 G A CCDC94 Silent p.K239K 0.25 TCGA-CR-7369-01 19 45916913 45916913 G T ERCC1 Missense_Mutation p.P289T 0.26 tolerated_low_confidence(0.06) benign(0.005) TCGA-CR-7369-01 19 50099696 50099696 A T PRR12 Missense_Mutation p.S702C 0.36 possibly_damaging(0.843) TCGA-CR-7369-01 19 5455922 5455922 C T ZNRF4 Silent p.N140N 0.27 TCGA-CR-7369-01 19 57839395 57839395 G A ZNF543 Missense_Mutation p.D189N 0.26 tolerated(0.07) benign(0.013) TCGA-CR-7369-01 1 10715709 10715710 - A CASZ1 Frame_Shift_Ins p.M554Ifs*6 0.49 TCGA-CR-7369-01 1 10720212 10720212 G A CASZ1 Missense_Mutation p.S296L 0.55 tolerated_low_confidence(0.08) benign(0.213) TCGA-CR-7369-01 1 109270438 109270438 T C FNDC7 Missense_Mutation p.C374R 0.26 deleterious(0) probably_damaging(0.999) TCGA-CR-7369-01 1 114447385 114447385 C A AP4B1 5'UTR 0.16 TCGA-CR-7369-01 1 14075948 14075948 C A PRDM2 Silent p.A159A 0.41 TCGA-CR-7369-01 1 144923767 144923767 T C PDE4DIP Missense_Mutation p.I231V 0.12 tolerated(1) benign(0.001) TCGA-CR-7369-01 1 154524644 154524644 G A UBE2Q1 Silent p.S297S 0.15 TCGA-CR-7369-01 1 158301282 158301282 C T CD1B 5'UTR 0.25 TCGA-CR-7369-01 1 186946794 186946794 T A PLA2G4A Missense_Mutation p.F612I 0.23 tolerated(0.11) possibly_damaging(0.877) TCGA-CR-7369-01 1 197091601 197091601 G A ASPM Missense_Mutation p.T1172M 0.20 deleterious(0) probably_damaging(0.973) TCGA-CR-7369-01 1 240656691 240656691 C T GREM2 Missense_Mutation p.A29T 0.37 tolerated(0.15) possibly_damaging(0.604) TCGA-CR-7369-01 1 245021401 245021401 A G HNRNPU Missense_Mutation p.I469T 0.20 tolerated(0.36) unknown(0) TCGA-CR-7369-01 1 33402524 33402524 G A RNF19B Silent p.A694A 0.25 TCGA-CR-7369-01 1 89481070 89481070 G C GBP3 Missense_Mutation p.S73C 0.25 deleterious(0) probably_damaging(0.977) TCGA-CR-7369-01 1 92604948 92604948 A G BTBD8 Missense_Mutation p.Y265C 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7369-01 20 31671216 31671216 C A BPIFB4 Silent p.P71P 0.25 TCGA-CR-7369-01 20 36841569 36841569 G A KIAA1755 Missense_Mutation p.R1160W 0.19 tolerated(1) benign(0) TCGA-CR-7369-01 20 37464808 37464808 C A PPP1R16B Missense_Mutation p.D80E 0.25 deleterious(0) probably_damaging(0.999) TCGA-CR-7369-01 20 43530339 43530339 C T YWHAB Silent p.G55G 0.33 TCGA-CR-7369-01 20 896725 896725 A C ANGPT4 Missense_Mutation p.Y45D 0.21 deleterious(0) probably_damaging(0.999) TCGA-CR-7369-01 21 47977603 47977603 C G DIP2A Missense_Mutation p.F1245L 0.33 tolerated(0.11) benign(0.002) TCGA-CR-7369-01 22 32009447 32009447 G T SFI1 Silent p.T891T 0.21 TCGA-CR-7369-01 2 166533063 166533063 G A CSRNP3 Missense_Mutation p.R217Q 0.28 tolerated(0.2) probably_damaging(0.99) TCGA-CR-7369-01 2 28210901 28210901 G A BRE Missense_Mutation p.D83N 0.22 deleterious(0) probably_damaging(0.998) TCGA-CR-7369-01 2 65318142 65318142 A G RAB1A Missense_Mutation p.I88T 0.15 deleterious(0) probably_damaging(0.995) TCGA-CR-7369-01 2 71633384 71633384 A G ZNF638 Missense_Mutation p.R1043G 0.27 deleterious(0) benign(0.031) TCGA-CR-7369-01 2 79385538 79385538 C G REG3A Missense_Mutation p.A83P 0.14 deleterious(0.04) benign(0.06) TCGA-CR-7369-01 2 89513199 89513199 G T IGKV1-27 Silent p.T20T 0.11 TCGA-CR-7369-01 2 89975752 89975752 G A IGKV2D-30 Missense_Mutation p.G17R 0.10 deleterious(0.01) possibly_damaging(0.515) TCGA-CR-7369-01 2 96072879 96072879 G A FAHD2A Missense_Mutation p.E146K 0.16 tolerated(0.19) benign(0.016) TCGA-CR-7369-01 3 102171893 102171893 C A ZPLD1 Nonsense_Mutation p.C95* 0.68 TCGA-CR-7369-01 3 122133906 122133906 C T WDR5B Missense_Mutation p.G157E 0.21 deleterious(0) probably_damaging(0.997) TCGA-CR-7369-01 3 160156068 160156069 TG - TRIM59 Frame_Shift_Del p.I302Sfs*17 0.16 TCGA-CR-7369-01 3 186338468 186338468 G A AHSG Missense_Mutation p.A285T 0.61 tolerated(0.58) benign(0.013) TCGA-CR-7369-01 3 47889378 47889378 A G DHX30 Missense_Mutation p.I740V 0.36 tolerated(0.19) benign(0.152) TCGA-CR-7369-01 3 78987994 78987994 T G ROBO1 Missense_Mutation p.T86P 0.27 deleterious(0) probably_damaging(0.987) TCGA-CR-7369-01 4 100131636 100131636 G A ADH6 Silent p.L96L 0.26 TCGA-CR-7369-01 4 151773953 151773953 C A LRBA Missense_Mutation p.G970V 0.22 tolerated(0.11) benign(0.063) TCGA-CR-7369-01 4 160266481 160266481 T G RAPGEF2 Missense_Mutation p.L1007V 0.16 tolerated(0.12) benign(0.009) TCGA-CR-7369-01 4 175598318 175598318 C T GLRA3 Missense_Mutation p.D280N 0.35 deleterious(0.03) possibly_damaging(0.746) TCGA-CR-7369-01 4 1902895 1902895 A T WHSC1 Missense_Mutation p.S172C 0.33 deleterious(0.01) possibly_damaging(0.75) TCGA-CR-7369-01 4 77091132 77091132 G T SCARB2 Missense_Mutation p.P334H 0.04 deleterious(0) possibly_damaging(0.853) TCGA-CR-7369-01 5 112868639 112868639 C T YTHDC2 Nonsense_Mutation p.Q247* 0.05 TCGA-CR-7369-01 5 122729184 122729184 G T CEP120 Missense_Mutation p.P207Q 0.42 deleterious(0) probably_damaging(0.978) TCGA-CR-7369-01 5 37008756 37008756 T G NIPBL Nonsense_Mutation p.L1451* 0.18 TCGA-CR-7369-01 5 41008749 41008749 C T MROH2B Silent p.V1189V 0.38 TCGA-CR-7369-01 6 10415240 10415240 G C TFAP2A 5'UTR 0.16 TCGA-CR-7369-01 6 159653481 159653481 A G FNDC1 Missense_Mutation p.D646G 0.15 tolerated_low_confidence(0.32) unknown(0) TCGA-CR-7369-01 6 348127 348127 G A DUSP22 Silent p.V96V 0.15 TCGA-CR-7369-01 6 36824426 36824426 T C PPIL1 Silent p.R72R 0.19 TCGA-CR-7369-01 6 40360344 40360344 C T LRFN2 Missense_Mutation p.A570T 0.15 tolerated(0.84) benign(0.004) TCGA-CR-7369-01 6 43189000 43189000 C T CUL9 Silent p.L2231L 0.23 TCGA-CR-7369-01 6 56857219 56857219 C T BEND6 Missense_Mutation p.S55F 0.21 tolerated_low_confidence(0.07) probably_damaging(0.962) TCGA-CR-7369-01 7 107732207 107732207 T C LAMB4 Missense_Mutation p.N522S 0.20 tolerated(0.19) benign(0.01) TCGA-CR-7369-01 7 130002807 130002807 C T CPA5 Missense_Mutation p.P240L 0.06 deleterious(0) probably_damaging(1) TCGA-CR-7369-01 7 18067095 18067095 C A PRPS1L1 Missense_Mutation p.R104L 0.25 deleterious(0) possibly_damaging(0.841) TCGA-CR-7369-01 8 103354705 103354705 T C UBR5 Missense_Mutation p.D365G 0.47 tolerated(0.09) probably_damaging(0.93) TCGA-CR-7369-01 8 145008578 145008579 - G PLEC Frame_Shift_Ins p.G497Wfs*30 0.27 TCGA-CR-7369-01 8 145583549 145583549 C T SLC52A2 Silent p.L133L 0.18 TCGA-CR-7369-01 8 52336282 52336282 G T PXDNL Missense_Mutation p.Q550K 0.19 tolerated(0.06) benign(0.395) TCGA-CR-7369-01 8 53044649 53044649 C G ST18 Missense_Mutation p.K845N 0.17 deleterious(0) probably_damaging(0.963) TCGA-CR-7369-01 8 88886149 88886149 C A DCAF4L2 Missense_Mutation p.K17N 0.28 deleterious(0) possibly_damaging(0.493) TCGA-CR-7369-01 9 19126190 19126190 C A PLIN2 Missense_Mutation p.A50S 0.32 deleterious(0) probably_damaging(0.999) TCGA-CR-7369-01 9 4117907 4117907 A G GLIS3 Missense_Mutation p.V524A 0.12 tolerated(0.11) benign(0.005) TCGA-CR-7369-01 9 78911648 78911648 C A PCSK5 Silent p.S1130S 0.27 TCGA-CR-7369-01 X 139586674 139586674 C T SOX3 Silent p.E184E 0.07 TCGA-CR-7369-01 X 49021041 49021041 C T MAGIX Intron 0.47 TCGA-CR-7370-01 10 104120033 104120033 G A GBF1 Missense_Mutation p.E424K 0.67 deleterious(0.05) possibly_damaging(0.889) TCGA-CR-7370-01 10 104416663 104416663 C T TRIM8 Missense_Mutation p.A403V 0.61 tolerated_low_confidence(0.28) benign(0.028) TCGA-CR-7370-01 10 117885028 117885028 C T GFRA1 Silent p.A158A 0.21 TCGA-CR-7370-01 10 23248003 23248003 T A ARMC3 Missense_Mutation p.D99E 0.52 tolerated(0.42) benign(0.102) TCGA-CR-7370-01 10 34671813 34671813 T C PARD3 Missense_Mutation p.I352V 0.58 tolerated(1) benign(0.001) TCGA-CR-7370-01 10 37520466 37520466 G C ANKRD30A 3'UTR 0.12 TCGA-CR-7370-01 10 44140211 44140211 C T ZNF32 Missense_Mutation p.E37K 0.13 tolerated_low_confidence(0.13) benign(0.292) TCGA-CR-7370-01 10 50863176 50863176 C T CHAT Missense_Mutation p.A557V 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7370-01 10 5498668 5498668 C - NET1 Frame_Shift_Del p.F503Sfs*45 0.49 TCGA-CR-7370-01 10 76803730 76803730 C T DUPD1 Silent p.T82T 0.48 TCGA-CR-7370-01 10 8006089 8006089 G A TAF3 Missense_Mutation p.D206N 0.57 deleterious(0.04) possibly_damaging(0.65) TCGA-CR-7370-01 10 82039969 82039969 G C MAT1A Missense_Mutation p.S170C 0.64 deleterious(0.01) possibly_damaging(0.499) TCGA-CR-7370-01 10 875449 875449 T A LARP4B Missense_Mutation p.Q334L 0.65 deleterious(0) probably_damaging(0.987) TCGA-CR-7370-01 10 87614373 87614373 C A GRID1 Splice_Site p.X372_splice 0.71 TCGA-CR-7370-01 10 98105775 98105775 C T OPALIN Missense_Mutation p.D117N 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-CR-7370-01 11 102738033 102738033 G C MMP12 RNA 0.70 TCGA-CR-7370-01 11 111938637 111938637 G C PIH1D2 Missense_Mutation p.I302M 0.53 tolerated(0.22) benign(0.209) TCGA-CR-7370-01 11 114393726 114393726 G A NXPE1 Missense_Mutation p.T186I 0.59 tolerated(0.32) benign(0.015) TCGA-CR-7370-01 11 114453199 114453199 T G NXPE4 Missense_Mutation p.Q214P 0.55 tolerated(0.2) possibly_damaging(0.566) TCGA-CR-7370-01 11 117299175 117299175 G A DSCAML1 Missense_Mutation p.P2071S 0.54 tolerated_low_confidence(0.32) benign(0.003) TCGA-CR-7370-01 11 119229766 119229766 A T USP2 Silent p.P380P 0.74 TCGA-CR-7370-01 11 1213747 1213747 G A MUC5AC RNA 0.36 TCGA-CR-7370-01 11 132306621 132306621 C T OPCML Silent p.K239K 0.48 TCGA-CR-7370-01 11 133790844 133790844 G T IGSF9B Missense_Mutation p.P926T 0.59 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 11 18158862 18158862 C - MRGPRX3 Frame_Shift_Del p.V40Sfs*3 0.25 TCGA-CR-7370-01 11 20483570 20483570 G A PRMT3 Missense_Mutation p.V373M 0.32 benign(0.001) TCGA-CR-7370-01 11 22242683 22242683 G T ANO5 Missense_Mutation p.R74L 0.42 deleterious(0) probably_damaging(0.994) TCGA-CR-7370-01 11 292048 292048 C T ATHL1 Missense_Mutation p.R327C 0.40 deleterious(0.01) probably_damaging(0.967) TCGA-CR-7370-01 11 31484808 31484808 G A IMMP1L Silent p.L6L 0.07 TCGA-CR-7370-01 11 3249862 3249862 G A MRGPRE Silent p.N55N 0.38 TCGA-CR-7370-01 11 44286554 44286554 C T ALX4 Silent p.T362T 0.21 TCGA-CR-7370-01 11 4470788 4470788 G T OR52K2 Silent p.L73L 0.40 TCGA-CR-7370-01 11 46726538 46726538 G C ZNF408 Missense_Mutation p.V430L 0.27 tolerated(0.78) probably_damaging(0.998) TCGA-CR-7370-01 11 47611622 47611622 C T C1QTNF4 Silent p.L247L 0.34 TCGA-CR-7370-01 11 48327915 48327915 C A OR4S1 Silent p.I47I 0.43 TCGA-CR-7370-01 11 5153170 5153170 C T OR52A5 Missense_Mutation p.E235K 0.49 deleterious(0.04) benign(0.327) TCGA-CR-7370-01 11 5373014 5373014 G T OR51B6 Nonsense_Mutation p.G93* 0.44 TCGA-CR-7370-01 11 5510563 5510563 C A OR52D1 Silent p.A209A 0.35 TCGA-CR-7370-01 11 55405873 55405873 G A OR4P4 Missense_Mutation p.G14R 0.39 deleterious(0) probably_damaging(0.988) TCGA-CR-7370-01 11 55658943 55658943 G T TRIM51 Silent p.V398V 0.34 TCGA-CR-7370-01 11 55681386 55681386 C T OR5W2 Missense_Mutation p.V225I 0.30 tolerated(0.87) benign(0.104) TCGA-CR-7370-01 11 55944656 55944656 C A OR5J2 Nonsense_Mutation p.S188* 0.39 TCGA-CR-7370-01 11 56128446 56128446 G A OR8J1 Missense_Mutation p.A242T 0.38 deleterious(0.02) benign(0.262) TCGA-CR-7370-01 11 57379390 57379390 C A SERPING1 Silent p.L410L 0.38 TCGA-CR-7370-01 11 58126398 58126398 G C OR5B17 Missense_Mutation p.L49V 0.36 tolerated_low_confidence(0.06) benign(0.049) TCGA-CR-7370-01 11 59626621 59626621 C G TCN1 Missense_Mutation p.E226Q 0.33 tolerated(0.28) benign(0.124) TCGA-CR-7370-01 11 59997435 59997435 A T MS4A4E Missense_Mutation p.C32S 0.44 deleterious_low_confidence(0.03) benign(0) TCGA-CR-7370-01 11 60637115 60637115 C A ZP1 Silent p.R142R 0.44 TCGA-CR-7370-01 11 61094321 61094321 T A DDB1 Silent p.R198R 0.38 TCGA-CR-7370-01 11 613308 613308 C T IRF7 Missense_Mutation p.E392K 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-CR-7370-01 11 62296993 62296993 T C AHNAK Silent p.P1632P 0.41 TCGA-CR-7370-01 11 64415749 64415749 C A NRXN2 Missense_Mutation p.W1115C 0.33 deleterious(0) probably_damaging(0.998) TCGA-CR-7370-01 11 67068516 67068516 G T ANKRD13D Missense_Mutation p.V377L 0.35 deleterious(0.02) probably_damaging(0.938) TCGA-CR-7370-01 11 67399229 67399229 C G TBX10 Silent p.P335P 0.29 TCGA-CR-7370-01 11 68181317 68181317 C T LRP5 Silent p.F888F 0.44 TCGA-CR-7370-01 11 6898646 6898646 C A OR10A4 Silent p.A256A 0.43 TCGA-CR-7370-01 11 6898647 6898647 A T OR10A4 Missense_Mutation p.I257F 0.43 tolerated(0.72) possibly_damaging(0.808) TCGA-CR-7370-01 11 70332941 70332941 G T SHANK2 Missense_Mutation p.P1154T 0.39 tolerated(0.19) benign(0) TCGA-CR-7370-01 11 71260116 71260116 C T KRTAP5-9 Missense_Mutation p.S138L 0.37 deleterious_low_confidence(0) unknown(0) TCGA-CR-7370-01 11 74013546 74013546 G T P4HA3 Missense_Mutation p.D145E 0.35 deleterious(0) probably_damaging(0.942) TCGA-CR-7370-01 11 74408263 74408263 A G CHRDL2 Missense_Mutation p.W419R 0.36 tolerated_low_confidence(0.95) benign(0) TCGA-CR-7370-01 11 74800700 74800700 C T OR2AT4 Missense_Mutation p.G20D 0.41 deleterious(0) probably_damaging(0.957) TCGA-CR-7370-01 11 8132424 8132424 C T RIC3 Missense_Mutation p.E311K 0.45 tolerated(0.06) possibly_damaging(0.699) TCGA-CR-7370-01 11 8947492 8947492 G A C11orf16 Missense_Mutation p.P241L 0.13 deleterious(0) probably_damaging(0.978) TCGA-CR-7370-01 12 104152959 104152959 T C STAB2 Missense_Mutation p.F2386L 0.53 tolerated(1) benign(0.011) TCGA-CR-7370-01 12 109684049 109684049 C A ACACB Silent p.I1789I 0.55 TCGA-CR-7370-01 12 111923529 111923529 G A ATXN2 Silent p.S975S 0.22 TCGA-CR-7370-01 12 117685212 117685212 C T NOS1 Missense_Mutation p.G956R 0.46 deleterious(0) probably_damaging(0.997) TCGA-CR-7370-01 12 120173008 120173008 C A CIT Missense_Mutation p.R1038L 0.26 deleterious(0.01) possibly_damaging(0.83) TCGA-CR-7370-01 12 120652757 120652757 G T PXN Silent p.V397V 0.15 TCGA-CR-7370-01 12 12232294 12232294 C T BCL2L14 Silent p.L19L 0.12 TCGA-CR-7370-01 12 123485364 123485364 G A PITPNM2 Silent p.F395F 0.12 TCGA-CR-7370-01 12 124144433 124144433 G A GTF2H3 Missense_Mutation p.R259Q 0.20 tolerated(0.08) possibly_damaging(0.832) TCGA-CR-7370-01 12 124191294 124191294 G T TCTN2 Missense_Mutation p.Q597H 0.39 deleterious(0.03) possibly_damaging(0.873) TCGA-CR-7370-01 12 130926460 130926460 C A RIMBP2 Silent p.P462P 0.40 TCGA-CR-7370-01 12 132510276 132510276 G T EP400 Silent p.A1647A 0.17 TCGA-CR-7370-01 12 133433063 133433063 G C CHFR Nonsense_Mutation p.S419* 0.22 TCGA-CR-7370-01 12 21168707 21168707 C A SLCO1B7 Missense_Mutation p.F26L 0.36 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 12 266858 266858 G A IQSEC3 Missense_Mutation p.R814Q 0.08 deleterious(0) probably_damaging(0.968) TCGA-CR-7370-01 12 43769237 43769237 A G ADAMTS20 Silent p.A1797A 0.19 TCGA-CR-7370-01 12 43846439 43846439 G C ADAMTS20 Missense_Mutation p.T607S 0.12 tolerated(0.15) probably_damaging(0.999) TCGA-CR-7370-01 12 43847820 43847820 C T ADAMTS20 Silent p.T550T 0.10 TCGA-CR-7370-01 12 4747326 4747326 C T AKAP3 Missense_Mutation p.G13R 0.22 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 12 49164737 49164737 C A ADCY6 Missense_Mutation p.R1023L 0.37 deleterious(0.03) benign(0.319) TCGA-CR-7370-01 12 49460759 49460759 C T RHEBL1 Missense_Mutation p.A62T 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7370-01 12 50594642 50594642 T C LIMA1 Missense_Mutation p.E297G 0.47 deleterious(0) probably_damaging(0.917) TCGA-CR-7370-01 12 52164414 52164414 A G SCN8A Missense_Mutation p.N1198D 0.13 tolerated(0.08) possibly_damaging(0.867) TCGA-CR-7370-01 12 53621207 53621207 C G RARG Missense_Mutation p.M41I 0.67 tolerated_low_confidence(0.45) benign(0.007) TCGA-CR-7370-01 12 53684657 53684657 G T ESPL1 Silent p.L1799L 0.40 TCGA-CR-7370-01 12 56395923 56395923 C T SUOX 5'UTR 0.33 TCGA-CR-7370-01 12 56554286 56554286 G T MYL6 Intron 0.18 TCGA-CR-7370-01 12 60168743 60168743 A G SLC16A7 Missense_Mutation p.I223V 0.44 tolerated(0.3) benign(0.055) TCGA-CR-7370-01 12 65088583 65088583 G T RASSF3 Missense_Mutation p.R203L 0.40 tolerated(0.24) benign(0.198) TCGA-CR-7370-01 12 6646845 6646845 C A GAPDH Silent p.I207I 0.45 TCGA-CR-7370-01 12 70087573 70087573 C A BEST3 Missense_Mutation p.G121V 0.32 deleterious(0) possibly_damaging(0.897) TCGA-CR-7370-01 12 7188341 7188341 C A C1R Missense_Mutation p.R486L 0.21 tolerated(0.09) benign(0.036) TCGA-CR-7370-01 12 72936127 72936127 G A TRHDE Silent p.R548R 0.42 TCGA-CR-7370-01 12 78400833 78400833 G A NAV3 Silent p.L505L 0.55 TCGA-CR-7370-01 12 78553062 78553062 A C NAV3 Missense_Mutation p.Q1622P 0.24 deleterious(0) possibly_damaging(0.713) TCGA-CR-7370-01 12 80655759 80655759 G A OTOGL Missense_Mutation p.G625S 0.18 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 12 80655760 80655760 G T OTOGL Missense_Mutation p.G625V 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 12 82147793 82147793 G T PPFIA2 Silent p.R70R 0.22 TCGA-CR-7370-01 12 85677506 85677506 C T ALX1 Missense_Mutation p.S128F 0.51 deleterious(0.01) probably_damaging(0.956) TCGA-CR-7370-01 12 88381702 88381702 G A C12orf50 Nonsense_Mutation p.R248* 0.44 TCGA-CR-7370-01 12 96394715 96394715 A T LTA4H 3'UTR 0.27 TCGA-CR-7370-01 13 109793638 109793638 C A MYO16 Missense_Mutation p.P1671H 0.55 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-7370-01 13 39262131 39262131 G T FREM2 Missense_Mutation p.R217L 0.78 deleterious(0.02) possibly_damaging(0.501) TCGA-CR-7370-01 13 48941688 48941688 C T RB1 Missense_Mutation p.A333V 0.62 deleterious(0.05) probably_damaging(0.996) TCGA-CR-7370-01 13 58298958 58298958 G C PCDH17 Missense_Mutation p.D1004H 0.70 deleterious(0) possibly_damaging(0.896) TCGA-CR-7370-01 13 61985813 61985813 C T PCDH20 Missense_Mutation p.E807K 0.74 tolerated(1) benign(0.013) TCGA-CR-7370-01 13 99092244 99092244 G T FARP1 Silent p.V821V 0.71 TCGA-CR-7370-01 14 100157458 100157458 G T CYP46A1 Nonsense_Mutation p.E54* 0.39 TCGA-CR-7370-01 14 100615483 100615483 G C DEGS2 Missense_Mutation p.S216C 0.83 deleterious(0) possibly_damaging(0.869) TCGA-CR-7370-01 14 102699058 102699058 C A MOK Intron 0.81 TCGA-CR-7370-01 14 105419983 105419983 C A AHNAK2 Missense_Mutation p.R602I 0.08 benign(0.017) TCGA-CR-7370-01 14 22972794 22972794 C A TRAJ37 Missense_Mutation p.T21N 0.82 unknown(0) TCGA-CR-7370-01 14 23354038 23354038 G C REM2 Missense_Mutation p.D87H 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7370-01 14 23355356 23355356 G A REM2 Missense_Mutation p.A215T 0.10 deleterious(0.05) benign(0.212) TCGA-CR-7370-01 14 23826490 23826491 TC - EFS Frame_Shift_Del p.E544Tfs*14 0.22 TCGA-CR-7370-01 14 25043923 25043923 T C CTSG Silent p.Q99Q 0.78 TCGA-CR-7370-01 14 31405784 31405784 C A STRN3 Missense_Mutation p.D255Y 0.79 deleterious(0.01) probably_damaging(0.925) TCGA-CR-7370-01 14 31405799 31405799 A C STRN3 Missense_Mutation p.F250V 0.75 deleterious(0.02) probably_damaging(0.968) TCGA-CR-7370-01 14 50857053 50857053 C T CDKL1 Intron 0.38 TCGA-CR-7370-01 14 55818402 55818402 G A FBXO34 Missense_Mutation p.V432I 0.06 tolerated(0.31) benign(0.004) TCGA-CR-7370-01 14 59112862 59112862 A G DACT1 Silent p.K507K 0.85 TCGA-CR-7370-01 14 59950740 59950740 C A L3HYPDH Missense_Mutation p.G99C 0.23 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 14 59950741 59950741 C A L3HYPDH Missense_Mutation p.E98D 0.23 deleterious(0.04) benign(0.021) TCGA-CR-7370-01 14 60756619 60756619 G T PPM1A Nonsense_Mutation p.E423* 0.41 TCGA-CR-7370-01 14 65268548 65268548 G A SPTB Missense_Mutation p.P191S 0.88 tolerated(0.05) probably_damaging(0.951) TCGA-CR-7370-01 14 74825284 74825284 G A VRTN Missense_Mutation p.E600K 0.73 tolerated(0.8) benign(0.005) TCGA-CR-7370-01 14 77948965 77948965 C A ISM2 Missense_Mutation p.D225Y 0.40 deleterious(0) possibly_damaging(0.488) TCGA-CR-7370-01 14 81953772 81953772 C T SEL1L Missense_Mutation p.G532S 0.78 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 14 86088031 86088031 C G FLRT2 Missense_Mutation p.P58R 0.77 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 14 95234726 95234726 G T GSC 3'UTR 0.50 TCGA-CR-7370-01 15 23811411 23811411 C A MKRN3 Missense_Mutation p.P161Q 0.38 tolerated(0.11) probably_damaging(0.946) TCGA-CR-7370-01 15 23811593 23811593 G T MKRN3 Nonsense_Mutation p.E222* 0.31 TCGA-CR-7370-01 15 24922301 24922301 G T NPAP1 Missense_Mutation p.L429F 0.34 deleterious(0.02) probably_damaging(0.976) TCGA-CR-7370-01 15 25322271 25322271 C A SNORD116-12 RNA 0.23 TCGA-CR-7370-01 15 25423728 25423728 A C SNORD115-6 5'Flank 0.21 TCGA-CR-7370-01 15 25423729 25423729 C A SNORD115-6 5'Flank 0.21 TCGA-CR-7370-01 15 25488662 25488662 G T SNORD115-40 5'Flank 0.22 TCGA-CR-7370-01 15 27128609 27128609 C T GABRA5 Silent p.F134F 0.11 TCGA-CR-7370-01 15 31197880 31197880 G A FAN1 Silent p.E338E 0.31 TCGA-CR-7370-01 15 34543234 34543234 G T SLC12A6 Missense_Mutation p.P453H 0.34 tolerated(0.18) benign(0.003) TCGA-CR-7370-01 15 34640393 34640393 C T NUTM1 Silent p.L80L 0.19 TCGA-CR-7370-01 15 38852064 38852064 C T RASGRP1 Missense_Mutation p.A60T 0.25 deleterious(0.01) probably_damaging(0.959) TCGA-CR-7370-01 15 42117604 42117604 C T MAPKBP1 Silent p.A1505A 0.36 TCGA-CR-7370-01 15 42278076 42278076 G A PLA2G4E Silent p.L721L 0.31 TCGA-CR-7370-01 15 43122142 43122142 G C TTBK2 Missense_Mutation p.I142M 0.26 deleterious(0) probably_damaging(0.936) TCGA-CR-7370-01 15 45491299 45491299 C T SHF 5'UTR 0.27 TCGA-CR-7370-01 15 45560574 45560574 C T SLC28A2 Nonsense_Mutation p.Q456* 0.40 TCGA-CR-7370-01 15 51984366 51984366 C A SCG3 Missense_Mutation p.A234E 0.15 tolerated_low_confidence(1) benign(0.392) TCGA-CR-7370-01 15 52015795 52015795 C A LYSMD2 3'UTR 0.39 TCGA-CR-7370-01 15 54305610 54305610 G T UNC13C Missense_Mutation p.E170D 0.26 tolerated_low_confidence(0.06) probably_damaging(0.99) TCGA-CR-7370-01 15 57929944 57929944 G A GCOM1 Missense_Mutation p.G329R 0.33 tolerated(0.14) benign(0.098) TCGA-CR-7370-01 15 69347810 69347810 C T NOX5 Silent p.R712R 0.38 TCGA-CR-7370-01 15 74367214 74367214 G C GOLGA6A Missense_Mutation p.Q326E 0.16 tolerated(0.26) probably_damaging(0.979) TCGA-CR-7370-01 15 76426602 76426602 C T C15orf27 5'UTR 0.21 TCGA-CR-7370-01 15 76630854 76630854 C A ISL2 Silent p.P170P 0.44 TCGA-CR-7370-01 15 78398049 78398049 C T CIB2 Intron 0.33 TCGA-CR-7370-01 15 78758820 78758820 A G IREB2 Silent p.Q206Q 0.32 TCGA-CR-7370-01 15 78765606 78765606 A G IREB2 Silent p.E302E 0.29 TCGA-CR-7370-01 15 79059741 79059741 C A ADAMTS7 Missense_Mutation p.A947S 0.44 tolerated(0.07) benign(0.222) TCGA-CR-7370-01 15 80423525 80423525 C T ZFAND6 Missense_Mutation p.S123L 0.08 deleterious(0.04) benign(0.003) TCGA-CR-7370-01 15 85326320 85326320 C T ZNF592 Silent p.F138F 0.23 TCGA-CR-7370-01 15 85431063 85431063 G T SLC28A1 Missense_Mutation p.M24I 0.38 tolerated(0.31) benign(0.055) TCGA-CR-7370-01 15 90019999 90019999 G T RHCG Missense_Mutation p.A433E 0.33 tolerated(0.92) benign(0.016) TCGA-CR-7370-01 15 97328505 97328505 C G SPATA8 3'UTR 0.44 TCGA-CR-7370-01 16 15225072 15225072 C T RP11-1186N24.5 RNA 0.54 TCGA-CR-7370-01 16 1552736 1552736 G T TELO2 Missense_Mutation p.A582S 0.27 deleterious(0.01) possibly_damaging(0.536) TCGA-CR-7370-01 16 20043241 20043241 C T GPR139 Missense_Mutation p.R293H 0.35 deleterious(0) probably_damaging(0.991) TCGA-CR-7370-01 16 21696600 21696600 T A OTOA Missense_Mutation p.L106Q 0.44 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 16 22271832 22271832 T G EEF2K Missense_Mutation p.D427E 0.38 tolerated(0.25) benign(0.004) TCGA-CR-7370-01 16 23647270 23647270 A C PALB2 Silent p.L199L 0.39 TCGA-CR-7370-01 16 24800997 24800997 G C TNRC6A Missense_Mutation p.W345S 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 16 30770330 30770330 C T C16orf93 Intron 0.53 TCGA-CR-7370-01 16 30770417 30770417 C T C16orf93 Missense_Mutation p.E245K 0.53 tolerated(0.1) benign(0.021) TCGA-CR-7370-01 16 30770423 30770423 C T C16orf93 Splice_Site p.X243_splice 0.52 TCGA-CR-7370-01 16 30771764 30771764 C G C16orf93 Missense_Mutation p.E104Q 0.45 tolerated(0.07) benign(0.145) TCGA-CR-7370-01 16 31143906 31143906 C T PRSS8 Silent p.L183L 0.49 TCGA-CR-7370-01 16 3274518 3274518 C T ZNF200 Missense_Mutation p.D188N 0.39 tolerated(0.15) possibly_damaging(0.798) TCGA-CR-7370-01 16 68842735 68842735 G A CDH1 Missense_Mutation p.R224H 0.11 tolerated(0.18) benign(0) TCGA-CR-7370-01 16 7102088 7102088 G A RBFOX1 Missense_Mutation p.E6K 0.31 tolerated_low_confidence(0.28) benign(0.006) TCGA-CR-7370-01 16 9923430 9923430 G T GRIN2A Silent p.V619V 0.33 TCGA-CR-7370-01 17 10206572 10206572 C A MYH13 Missense_Mutation p.D1870Y 0.37 deleterious(0) possibly_damaging(0.89) TCGA-CR-7370-01 17 10310220 10310220 G A MYH8 Missense_Mutation p.T681I 0.10 tolerated(0.09) benign(0.239) TCGA-CR-7370-01 17 10351938 10351938 G - MYH4 Frame_Shift_Del p.Q1510Nfs*7 0.23 TCGA-CR-7370-01 17 10364260 10364260 C A MYH4 Nonsense_Mutation p.E374* 0.36 TCGA-CR-7370-01 17 10366498 10366498 T C MYH4 Silent p.L271L 0.38 TCGA-CR-7370-01 17 10554888 10554888 T A MYH3 Missense_Mutation p.Q149L 0.31 deleterious(0.04) benign(0.022) TCGA-CR-7370-01 17 18030103 18030103 A G MYO15A Splice_Site p.X1289_splice 0.33 TCGA-CR-7370-01 17 18653137 18653137 T C FBXW10 Missense_Mutation p.L258S 0.23 deleterious(0) probably_damaging(0.917) TCGA-CR-7370-01 17 1936719 1936719 C A DPH1 Intron 0.42 TCGA-CR-7370-01 17 21205550 21205550 C A MAP2K3 Silent p.I165I 0.23 TCGA-CR-7370-01 17 21318731 21318731 C T KCNJ12 Missense_Mutation p.S26L 0.08 tolerated(0.36) benign(0.242) TCGA-CR-7370-01 17 21318732 21318732 G C KCNJ12 Silent p.S26S 0.12 TCGA-CR-7370-01 17 26084314 26084314 C A NOS2 Missense_Mutation p.R1140S 0.36 tolerated(0.37) benign(0) TCGA-CR-7370-01 17 27008409 27008409 G T SUPT6H Missense_Mutation p.E495D 0.36 tolerated(0.41) benign(0.002) TCGA-CR-7370-01 17 31340990 31340990 G T ASIC2 Missense_Mutation p.A562D 0.36 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 17 32690143 32690143 A T CCL1 Missense_Mutation p.L13Q 0.41 deleterious(0) probably_damaging(0.991) TCGA-CR-7370-01 17 33768373 33768373 G A SLFN13 Silent p.I645I 0.31 TCGA-CR-7370-01 17 38564238 38564238 C A TOP2A Missense_Mutation p.R494L 0.35 deleterious(0) possibly_damaging(0.859) TCGA-CR-7370-01 17 38975866 38975866 C G KRT10 Missense_Mutation p.E426Q 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7370-01 17 40847817 40847817 A T CNTNAP1 Missense_Mutation p.S1091C 0.40 tolerated(0.08) benign(0.387) TCGA-CR-7370-01 17 41052904 41052904 G A G6PC Missense_Mutation p.G4E 0.17 tolerated(1) benign(0.147) TCGA-CR-7370-01 17 48676874 48676874 G T CACNA1G Missense_Mutation p.R1115L 0.50 deleterious(0.01) possibly_damaging(0.596) TCGA-CR-7370-01 17 5085012 5085012 T C ZNF594 3'UTR 0.35 TCGA-CR-7370-01 17 5085080 5085080 G C ZNF594 3'UTR 0.38 TCGA-CR-7370-01 17 51900391 51900391 C A KIF2B 5'UTR 0.41 TCGA-CR-7370-01 17 56620307 56620307 G T C17orf47 Missense_Mutation p.P414H 0.24 deleterious(0) probably_damaging(0.979) TCGA-CR-7370-01 17 56620308 56620308 G T C17orf47 Missense_Mutation p.P414T 0.22 deleterious(0) probably_damaging(0.958) TCGA-CR-7370-01 17 56620309 56620309 C T C17orf47 Silent p.L413L 0.21 TCGA-CR-7370-01 17 58258936 58258936 T A USP32 Missense_Mutation p.N1433Y 0.22 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-CR-7370-01 17 62291328 62291328 C A TEX2 Missense_Mutation p.D84Y 0.37 tolerated_low_confidence(0.09) possibly_damaging(0.61) TCGA-CR-7370-01 17 65628289 65628289 A T PITPNC1 Nonsense_Mutation p.R133* 0.41 TCGA-CR-7370-01 17 65722658 65722658 G A NOL11 Silent p.L249L 0.44 TCGA-CR-7370-01 17 67047271 67047271 G C ABCA9 5'UTR 0.25 TCGA-CR-7370-01 17 7366417 7366417 C A ZBTB4 Silent p.L628L 0.44 TCGA-CR-7370-01 17 7577569 7577569 A T TP53 Missense_Mutation p.C238S 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 17 7662908 7662908 C G DNAH2 Missense_Mutation p.L873V 0.09 benign(0) TCGA-CR-7370-01 17 7814256 7814256 A G CHD3 Missense_Mutation p.N2008S 0.40 benign(0.292) TCGA-CR-7370-01 17 8451705 8451705 G A MYH10 Missense_Mutation p.S362L 0.50 benign(0.005) TCGA-CR-7370-01 17 9792910 9792910 C A GLP2R Missense_Mutation p.P517H 0.43 deleterious(0.01) possibly_damaging(0.711) TCGA-CR-7370-01 18 11868555 11868555 C T GNAL Silent p.I308I 0.04 TCGA-CR-7370-01 18 14542920 14542920 C T POTEC Missense_Mutation p.G76S 0.04 tolerated_low_confidence(0.07) possibly_damaging(0.862) TCGA-CR-7370-01 18 47017972 47017973 - T RPL17 5'UTR 0.10 TCGA-CR-7370-01 18 50866223 50866223 G A DCC Missense_Mutation p.A769T 0.23 deleterious(0.02) benign(0.44) TCGA-CR-7370-01 18 5397201 5397201 C A EPB41L3 Missense_Mutation p.E899D 0.77 tolerated(0.19) benign(0.003) TCGA-CR-7370-01 18 63547683 63547683 C A CDH7 Silent p.P637P 0.32 TCGA-CR-7370-01 18 677394 677394 G A ENOSF1 Missense_Mutation p.H374Y 0.04 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 18 72997606 72997606 A T TSHZ1 Missense_Mutation p.S37C 0.45 deleterious(0) probably_damaging(0.997) TCGA-CR-7370-01 18 7888335 7888335 C A PTPRM Missense_Mutation p.A143E 0.05 deleterious(0) probably_damaging(0.965) TCGA-CR-7370-01 18 8113617 8113617 G T PTPRM Nonsense_Mutation p.E664* 0.77 TCGA-CR-7370-01 18 8786039 8786039 G A SOGA2 Missense_Mutation p.G613R 0.85 tolerated(0.12) probably_damaging(0.997) TCGA-CR-7370-01 19 10505718 10505718 C A CDC37 Silent p.R235R 0.78 TCGA-CR-7370-01 19 12154763 12154763 C G ZNF878 Missense_Mutation p.G485R 0.78 tolerated(0.05) probably_damaging(0.987) TCGA-CR-7370-01 19 12577309 12577309 A C ZNF709 Missense_Mutation p.I52S 0.05 deleterious(0.05) benign(0) TCGA-CR-7370-01 19 15537872 15537872 C A WIZ Silent p.P334P 0.76 TCGA-CR-7370-01 19 18271316 18271316 C T PIK3R2 Missense_Mutation p.P120S 0.46 deleterious(0.04) possibly_damaging(0.508) TCGA-CR-7370-01 19 20727787 20727787 A G ZNF737 Missense_Mutation p.Y408H 0.31 tolerated(0.65) unknown(0) TCGA-CR-7370-01 19 32954307 32954307 A - DPY19L3 Frame_Shift_Del p.G455Afs*5 0.34 TCGA-CR-7370-01 19 36212275 36212275 G A KMT2B Missense_Mutation p.A676T 0.50 benign(0.01) TCGA-CR-7370-01 19 37440567 37440567 C A ZNF568 Nonsense_Mutation p.S171* 0.08 TCGA-CR-7370-01 19 38876144 38876144 G T GGN Missense_Mutation p.F586L 0.36 deleterious_low_confidence(0.01) probably_damaging(0.916) TCGA-CR-7370-01 19 38899416 38899416 G T FAM98C Missense_Mutation p.R315L 0.25 deleterious(0) probably_damaging(0.976) TCGA-CR-7370-01 19 39691333 39691333 G C NCCRP1 Missense_Mutation p.E255D 0.38 tolerated(0.33) possibly_damaging(0.761) TCGA-CR-7370-01 19 40909731 40909731 C G PRX Missense_Mutation p.E22D 0.29 deleterious(0) benign(0.388) TCGA-CR-7370-01 19 41257159 41257159 G A SNRPA 5'UTR 0.62 TCGA-CR-7370-01 19 41854358 41854358 T C TGFB1 Missense_Mutation p.I120V 0.40 tolerated(0.5) benign(0.001) TCGA-CR-7370-01 19 4216937 4216937 G T ANKRD24 Missense_Mutation p.A594S 0.21 tolerated_low_confidence(0.11) benign(0.004) TCGA-CR-7370-01 19 42187790 42187790 A T CEACAM7 Missense_Mutation p.I211K 0.42 tolerated(0.08) benign(0.005) TCGA-CR-7370-01 19 42224051 42224051 C T CEACAM5 Silent p.D565D 0.44 TCGA-CR-7370-01 19 42381281 42381282 - G CD79A 5'UTR 0.17 TCGA-CR-7370-01 19 45540703 45540703 C A RELB Missense_Mutation p.D465E 0.17 deleterious(0.01) possibly_damaging(0.784) TCGA-CR-7370-01 19 45570821 45570821 G T CLASRP Missense_Mutation p.A546S 0.50 tolerated_low_confidence(0.07) unknown(0) TCGA-CR-7370-01 19 46914604 46914604 C T CCDC8 Nonsense_Mutation p.W488* 0.36 TCGA-CR-7370-01 19 49488819 49488819 C A GYS1 Missense_Mutation p.R241L 0.31 deleterious(0) possibly_damaging(0.733) TCGA-CR-7370-01 19 50123642 50123642 G T PRR12 Missense_Mutation p.R1844M 0.16 unknown(0) TCGA-CR-7370-01 19 50204810 50204810 C A CPT1C Silent p.V204V 0.44 TCGA-CR-7370-01 19 50305113 50305113 C T AP2A1 Silent p.I640I 0.60 TCGA-CR-7370-01 19 50412135 50412135 C A NUP62 Silent p.V310V 0.33 TCGA-CR-7370-01 19 51633327 51633327 C A SIGLEC9 Intron 0.30 TCGA-CR-7370-01 19 52149112 52149112 C - SIGLEC14 Frame_Shift_Del p.G208Afs*8 0.33 TCGA-CR-7370-01 19 52394076 52394076 G A ZNF649 Missense_Mutation p.A438V 0.33 deleterious(0) probably_damaging(0.926) TCGA-CR-7370-01 19 52496176 52496176 G A ZNF615 Missense_Mutation p.A729V 0.42 tolerated(0.63) probably_damaging(0.937) TCGA-CR-7370-01 19 52919907 52919907 G T ZNF528 Missense_Mutation p.G601V 0.35 deleterious(0) probably_damaging(0.996) TCGA-CR-7370-01 19 53122257 53122257 A T ZNF83 Intron 0.21 TCGA-CR-7370-01 19 53612438 53612438 A G ZNF415 Missense_Mutation p.L287P 0.12 deleterious(0) probably_damaging(0.99) TCGA-CR-7370-01 19 54297343 54297343 G T NLRP12 Missense_Mutation p.A1049E 0.28 tolerated(0.15) possibly_damaging(0.769) TCGA-CR-7370-01 19 54418659 54418659 C A CACNG7 Silent p.L108L 0.39 TCGA-CR-7370-01 19 54666867 54666867 G C TMC4 Missense_Mutation p.L441V 0.33 tolerated(0.09) probably_damaging(0.997) TCGA-CR-7370-01 19 55019221 55019221 G T LAIR2 Missense_Mutation p.R62S 0.38 deleterious(0.01) benign(0.216) TCGA-CR-7370-01 19 55019222 55019222 G T LAIR2 Nonsense_Mutation p.E63* 0.38 TCGA-CR-7370-01 19 55106360 55106360 G T LILRA1 Missense_Mutation p.G101C 0.40 tolerated(0.17) probably_damaging(0.998) TCGA-CR-7370-01 19 55177323 55177323 T A LILRB4 Missense_Mutation p.L272H 0.28 deleterious(0) probably_damaging(0.986) TCGA-CR-7370-01 19 55177324 55177324 C A LILRB4 Silent p.L272L 0.31 TCGA-CR-7370-01 19 55693038 55693038 C A PTPRH 3'UTR 0.37 TCGA-CR-7370-01 19 56487625 56487625 G T NLRP8 Silent p.L944L 0.42 TCGA-CR-7370-01 19 57325220 57325220 C G PEG3 Missense_Mutation p.M1530I 0.37 tolerated(0.08) benign(0.007) TCGA-CR-7370-01 1 103343518 103343518 G C COL11A1 3'UTR 0.31 TCGA-CR-7370-01 1 103462681 103462681 C T COL11A1 Splice_Site p.X733_splice 0.66 TCGA-CR-7370-01 1 103487279 103487279 G T COL11A1 Missense_Mutation p.P431Q 0.57 probably_damaging(0.991) TCGA-CR-7370-01 1 112298279 112298279 C A DDX20 5'UTR 0.57 TCGA-CR-7370-01 1 145075791 145075791 G T PDE4DIP Silent p.R24R 0.18 TCGA-CR-7370-01 1 146747865 146747865 G C CHD1L Missense_Mutation p.E495Q 0.05 deleterious(0.02) benign(0.287) TCGA-CR-7370-01 1 152005294 152005294 C G S100A11 Missense_Mutation p.Q54H 0.35 deleterious(0.02) benign(0.063) TCGA-CR-7370-01 1 155004083 155004083 G A DCST2 Missense_Mutation p.P236S 0.29 tolerated(0.44) benign(0.205) TCGA-CR-7370-01 1 155837912 155837912 T C SYT11 Missense_Mutation p.I64T 0.32 deleterious(0.01) possibly_damaging(0.905) TCGA-CR-7370-01 1 158227497 158227497 C A CD1A 3'UTR 0.35 TCGA-CR-7370-01 1 158325824 158325824 G C CD1E Missense_Mutation p.G278A 0.35 tolerated(0.46) benign(0.173) TCGA-CR-7370-01 1 158435444 158435444 C T OR10K1 Silent p.F31F 0.38 TCGA-CR-7370-01 1 158582607 158582607 C T SPTA1 Silent p.Q2378Q 0.33 TCGA-CR-7370-01 1 158627344 158627344 C G SPTA1 Missense_Mutation p.E910Q 0.38 deleterious(0.04) probably_damaging(0.954) TCGA-CR-7370-01 1 159175930 159175930 C A DARC Missense_Mutation p.A236E 0.28 tolerated(0.17) possibly_damaging(0.686) TCGA-CR-7370-01 1 161093691 161093691 C G DEDD Missense_Mutation p.R124P 0.27 deleterious(0.02) benign(0.375) TCGA-CR-7370-01 1 162731083 162731083 G T DDR2 Missense_Mutation p.W313L 0.47 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 1 162824618 162824618 G A C1orf110 Silent p.S282S 0.41 TCGA-CR-7370-01 1 177226407 177226407 A T BRINP2 Missense_Mutation p.S186C 0.32 deleterious(0) possibly_damaging(0.819) TCGA-CR-7370-01 1 180006140 180006140 G T CEP350 Silent p.S1342S 0.50 TCGA-CR-7370-01 1 181690908 181690908 G A CACNA1E Silent p.E657E 0.31 TCGA-CR-7370-01 1 193028325 193028325 A C UCHL5 Missense_Mutation p.I22M 0.64 deleterious(0.01) probably_damaging(0.988) TCGA-CR-7370-01 1 196227558 196227558 G T KCNT2 Missense_Mutation p.R993S 0.33 tolerated(0.23) benign(0.274) TCGA-CR-7370-01 1 197404354 197404354 C A CRB1 Missense_Mutation p.Q1121K 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-CR-7370-01 1 205900999 205900999 C G SLC26A9 Missense_Mutation p.A181P 0.38 deleterious(0) probably_damaging(0.998) TCGA-CR-7370-01 1 207106357 207106357 C A PIGR Silent p.G620G 0.28 TCGA-CR-7370-01 1 209781228 209781228 C A CAMK1G Silent p.P195P 0.37 TCGA-CR-7370-01 1 210006693 210006693 A G DIEXF Silent p.K184K 0.34 TCGA-CR-7370-01 1 211093374 211093374 C A KCNH1 Missense_Mutation p.R357L 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 1 214170119 214170119 G A PROX1 Missense_Mutation p.E81K 0.10 deleterious(0.01) possibly_damaging(0.723) TCGA-CR-7370-01 1 214170863 214170863 G A PROX1 Missense_Mutation p.G329S 0.14 tolerated(0.16) benign(0.02) TCGA-CR-7370-01 1 215955411 215955411 C G USH2A Silent p.T3571T 0.37 TCGA-CR-7370-01 1 216258127 216258127 G T USH2A Missense_Mutation p.Q1694K 0.37 benign(0.009) TCGA-CR-7370-01 1 217822275 217822275 A T SPATA17 Missense_Mutation p.Q40H 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 1 235324273 235324273 G A RBM34 Missense_Mutation p.R55W 0.20 tolerated(0.07) possibly_damaging(0.849) TCGA-CR-7370-01 1 237774236 237774236 C A RYR2 Missense_Mutation p.Q1620K 0.23 possibly_damaging(0.477) TCGA-CR-7370-01 1 237817705 237817705 G T RYR2 Silent p.L2652L 0.31 TCGA-CR-7370-01 1 237843850 237843850 C G RYR2 Missense_Mutation p.S2997C 0.53 probably_damaging(0.979) TCGA-CR-7370-01 1 240370334 240370334 C T FMN2 Missense_Mutation p.A741V 0.26 unknown(0) TCGA-CR-7370-01 1 240371462 240371462 G C FMN2 Missense_Mutation p.G1117A 0.43 unknown(0) TCGA-CR-7370-01 1 241798273 241798273 G C CHML Missense_Mutation p.L266V 0.35 deleterious(0) probably_damaging(0.996) TCGA-CR-7370-01 1 246784843 246784844 - GC CNST Frame_Shift_Ins p.P166Rfs*32 0.30 TCGA-CR-7370-01 1 247769784 247769784 G C OR2G3 Missense_Mutation p.E299D 0.33 tolerated(0.09) benign(0.001) TCGA-CR-7370-01 1 248224349 248224349 C T OR2L3 Silent p.Y122Y 0.40 TCGA-CR-7370-01 1 248343675 248343675 C A OR2M2 Missense_Mutation p.L130I 0.33 deleterious(0) probably_damaging(0.977) TCGA-CR-7370-01 1 248458101 248458102 GG T OR2T12 Frame_Shift_Del p.P260Qfs*24 0.25 TCGA-CR-7370-01 1 248487047 248487047 G A OR2M7 Missense_Mutation p.S275F 0.40 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 1 248756557 248756557 G A OR2T10 Silent p.S171S 0.35 TCGA-CR-7370-01 1 26607338 26607338 A G SH3BGRL3 Missense_Mutation p.N44S 0.66 tolerated(0.65) benign(0.02) TCGA-CR-7370-01 1 34123627 34123627 C T CSMD2 Missense_Mutation p.A1416T 0.65 tolerated(0.4) benign(0.003) TCGA-CR-7370-01 1 34174731 34174731 C T CSMD2 Silent p.L1138L 0.12 TCGA-CR-7370-01 1 36068886 36068886 G A PSMB2 Silent p.F196F 0.17 TCGA-CR-7370-01 1 3740094 3740094 C A CEP104 Missense_Mutation p.L799F 0.53 deleterious(0) probably_damaging(0.997) TCGA-CR-7370-01 1 43738818 43738818 G T TMEM125 Missense_Mutation p.R142L 0.64 tolerated(0.1) benign(0.253) TCGA-CR-7370-01 1 53074130 53074130 G T GPX7 3'UTR 0.47 TCGA-CR-7370-01 1 55518372 55518372 G A PCSK9 Missense_Mutation p.G236D 0.67 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 1 62340990 62340990 G T INADL Missense_Mutation p.D971Y 0.71 deleterious(0) probably_damaging(0.928) TCGA-CR-7370-01 1 75072536 75072536 C A C1orf173 Missense_Mutation p.R413M 0.60 deleterious(0) possibly_damaging(0.615) TCGA-CR-7370-01 1 85561694 85561694 C G WDR63 Missense_Mutation p.I418M 0.63 tolerated(0.17) benign(0.064) TCGA-CR-7370-01 1 9019024 9019024 C A CA6 Missense_Mutation p.A155E 0.65 tolerated(0.32) benign(0.187) TCGA-CR-7370-01 1 91843694 91843694 A G HFM1 Missense_Mutation p.V428A 0.56 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 20 1144966 1144966 C T PSMF1 Missense_Mutation p.R204W 0.47 deleterious(0.05) possibly_damaging(0.72) TCGA-CR-7370-01 20 13280156 13280156 C A ISM1 3'UTR 0.28 TCGA-CR-7370-01 20 16719498 16719498 G A SNRPB2 Missense_Mutation p.G127E 0.23 tolerated(0.37) benign(0.116) TCGA-CR-7370-01 20 21687098 21687098 C T PAX1 Silent p.N103N 0.24 TCGA-CR-7370-01 20 29628289 29628289 A T FRG1B Silent p.I97I 0.11 TCGA-CR-7370-01 20 30408307 30408307 C T MYLK2 Missense_Mutation p.P144L 0.47 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 20 32378871 32378871 C T ZNF341 Missense_Mutation p.H698Y 0.25 deleterious(0.03) benign(0.417) TCGA-CR-7370-01 20 33337564 33337564 C A NCOA6 Missense_Mutation p.V812F 0.40 possibly_damaging(0.854) TCGA-CR-7370-01 20 33345322 33345322 C A NCOA6 Missense_Mutation p.G410V 0.31 possibly_damaging(0.642) TCGA-CR-7370-01 20 44839176 44839176 G T CDH22 Silent p.P352P 0.60 TCGA-CR-7370-01 20 49221286 49221286 C G FAM65C Missense_Mutation p.V324L 0.42 tolerated(0.67) benign(0.005) TCGA-CR-7370-01 20 56929251 56929254 TATT - RAB22A Frame_Shift_Del p.I140Mfs*5 0.38 TCGA-CR-7370-01 20 60887107 60887107 C T LAMA5 Splice_Site p.X3169_splice 0.47 TCGA-CR-7370-01 20 6759467 6759467 G A BMP2 Missense_Mutation p.V308M 0.24 deleterious(0) probably_damaging(0.995) TCGA-CR-7370-01 20 8609052 8609052 G T PLCB1 Missense_Mutation p.V120L 0.29 tolerated(0.15) benign(0.105) TCGA-CR-7370-01 20 947818 947818 C T RSPO4 Silent p.Q136Q 0.16 TCGA-CR-7370-01 21 10959762 10959762 G T TPTE Missense_Mutation p.A71D 0.04 tolerated(0.47) benign(0.002) TCGA-CR-7370-01 21 11012957 11012957 A C TPTE RNA 0.05 TCGA-CR-7370-01 21 11012958 11012958 G T TPTE RNA 0.05 TCGA-CR-7370-01 21 41539196 41539196 C A DSCAM Missense_Mutation p.Q989H 0.30 tolerated(0.07) benign(0.436) TCGA-CR-7370-01 21 46047615 46047615 C - KRTAP10-9 Frame_Shift_Del p.C178Afs*203 0.26 TCGA-CR-7370-01 21 47545908 47545908 G T COL6A2 Missense_Mutation p.A727S 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-CR-7370-01 22 18300912 18300912 G - MICAL3 Frame_Shift_Del p.R1506Efs*99 0.42 TCGA-CR-7370-01 22 20760750 20760750 A C ZNF74 Missense_Mutation p.E476A 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7370-01 22 32828502 32828502 G T BPIFC Missense_Mutation p.P336H 0.31 deleterious(0) probably_damaging(0.993) TCGA-CR-7370-01 22 38121264 38121264 A T TRIOBP Missense_Mutation p.N901Y 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-7370-01 22 38212669 38212669 G T GCAT Missense_Mutation p.D428Y 0.41 deleterious(0) probably_damaging(0.954) TCGA-CR-7370-01 22 39219124 39219124 G C NPTXR Missense_Mutation p.I414M 0.30 deleterious(0) possibly_damaging(0.867) TCGA-CR-7370-01 22 40140270 40140270 C T ENTHD1 Missense_Mutation p.G413E 0.15 tolerated(0.15) benign(0.038) TCGA-CR-7370-01 22 46657867 46657867 G C PKDREJ Silent p.L451L 0.51 TCGA-CR-7370-01 22 46658330 46658330 G A PKDREJ Missense_Mutation p.S297L 0.48 deleterious(0.02) possibly_damaging(0.557) TCGA-CR-7370-01 22 50665439 50665439 C A TUBGCP6 Missense_Mutation p.A494S 0.27 tolerated(0.72) benign(0.041) TCGA-CR-7370-01 22 51041671 51041671 G T MAPK8IP2 Missense_Mutation p.R64L 0.50 deleterious(0) probably_damaging(0.994) TCGA-CR-7370-01 2 100623731 100623731 G A AFF3 Silent p.P147P 0.40 TCGA-CR-7370-01 2 102968192 102968192 G A IL1RL1 Silent p.E494E 0.15 TCGA-CR-7370-01 2 10563138 10563138 G A HPCAL1 Missense_Mutation p.M136I 0.23 tolerated(0.14) benign(0.002) TCGA-CR-7370-01 2 116598360 116598360 C G DPP10 Missense_Mutation p.I743M 0.41 deleterious(0) benign(0.42) TCGA-CR-7370-01 2 121555035 121555035 G A GLI2 Missense_Mutation p.A47T 0.29 tolerated_low_confidence(0.15) benign(0.002) TCGA-CR-7370-01 2 12881002 12881002 C T TRIB2 3'UTR 0.25 TCGA-CR-7370-01 2 135744037 135744037 G A MAP3K19 Missense_Mutation p.P802L 0.49 tolerated(1) benign(0) TCGA-CR-7370-01 2 136467633 136467633 A G R3HDM1 Silent p.G821G 0.35 TCGA-CR-7370-01 2 136566979 136566979 A T LCT Missense_Mutation p.W980R 0.44 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 2 15415825 15415825 T A NBAS Missense_Mutation p.K1836M 0.24 deleterious(0.02) benign(0.274) TCGA-CR-7370-01 2 158962720 158962720 G C UPP2 Missense_Mutation p.D115H 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-CR-7370-01 2 160257124 160257124 G A BAZ2B Nonsense_Mutation p.Q962* 0.28 TCGA-CR-7370-01 2 164466811 164466811 C A FIGN Missense_Mutation p.A511S 0.48 tolerated(0.3) benign(0.313) TCGA-CR-7370-01 2 1652098 1652098 G T PXDN Missense_Mutation p.L1152M 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-CR-7370-01 2 1652817 1652817 G A PXDN Missense_Mutation p.A912V 0.47 deleterious(0) probably_damaging(0.997) TCGA-CR-7370-01 2 165956828 165956828 C A SCN3A Missense_Mutation p.R1317L 0.41 deleterious(0) possibly_damaging(0.843) TCGA-CR-7370-01 2 1668820 1668820 G C PXDN Missense_Mutation p.Q440E 0.53 tolerated(0.43) benign(0.008) TCGA-CR-7370-01 2 175287708 175287708 T A SCRN3 Missense_Mutation p.S284T 0.49 deleterious(0) probably_damaging(0.927) TCGA-CR-7370-01 2 179401131 179401131 C G TTN Missense_Mutation p.R33448P 0.28 TCGA-CR-7370-01 2 179412806 179412806 C T TTN Missense_Mutation p.E31183K 0.51 TCGA-CR-7370-01 2 179439363 179439363 G T TTN Silent p.T23832T 0.17 TCGA-CR-7370-01 2 179443986 179443986 G C TTN Missense_Mutation p.L22591V 0.45 TCGA-CR-7370-01 2 179598401 179598401 T C TTN Missense_Mutation p.T5239A 0.28 TCGA-CR-7370-01 2 179610817 179610817 G T TTN Intron 0.48 TCGA-CR-7370-01 2 179613353 179613353 C T TTN Intron 0.05 TCGA-CR-7370-01 2 182779977 182779977 C T SSFA2 Missense_Mutation p.A537V 0.45 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 2 189918902 189918902 C A COL5A2 Missense_Mutation p.G810C 0.43 unknown(0) TCGA-CR-7370-01 2 196825030 196825030 T C DNAH7 Missense_Mutation p.T949A 0.06 deleterious(0) probably_damaging(0.984) TCGA-CR-7370-01 2 219677074 219677074 G T CYP27A1 Silent p.L192L 0.05 TCGA-CR-7370-01 2 231248247 231248247 G T SP140L Missense_Mutation p.W220C 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7370-01 2 233349955 233349955 A T ECEL1 Missense_Mutation p.L270Q 0.81 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 2 233349956 233349956 G T ECEL1 Missense_Mutation p.L270M 0.81 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 2 241661290 241661290 C T KIF1A Silent p.L1559L 0.75 TCGA-CR-7370-01 2 25464448 25464448 T A DNMT3A Missense_Mutation p.S689C 0.16 deleterious(0) possibly_damaging(0.57) TCGA-CR-7370-01 2 29074027 29074027 T C TRMT61B Missense_Mutation p.K408R 0.15 tolerated(0.73) benign(0.003) TCGA-CR-7370-01 2 32859031 32859031 C G TTC27 Missense_Mutation p.Q119E 0.24 tolerated(0.29) benign(0.001) TCGA-CR-7370-01 2 33246136 33246136 G T LTBP1 Missense_Mutation p.W242C 0.44 tolerated(0.06) possibly_damaging(0.619) TCGA-CR-7370-01 2 63380060 63380060 C A WDPCP Missense_Mutation p.G727C 0.26 tolerated(0.19) benign(0) TCGA-CR-7370-01 2 65296555 65296555 C T CEP68 5'UTR 0.22 TCGA-CR-7370-01 2 65540558 65540558 C A SPRED2 3'UTR 0.46 TCGA-CR-7370-01 2 65540979 65540979 C G SPRED2 Missense_Mutation p.E305Q 0.16 tolerated(0.09) benign(0.346) TCGA-CR-7370-01 2 70475683 70475683 C T TIA1 5'UTR 0.61 TCGA-CR-7370-01 2 73446061 73446061 G T SMYD5 Missense_Mutation p.A57S 0.28 tolerated(0.8) benign(0.017) TCGA-CR-7370-01 2 74763195 74763195 T A LOXL3 Silent p.T392T 0.46 TCGA-CR-7370-01 2 79349979 79349979 C T REG1A Missense_Mutation p.H112Y 0.23 deleterious(0.02) possibly_damaging(0.684) TCGA-CR-7370-01 2 79384262 79384262 G T REG3A 3'UTR 0.53 TCGA-CR-7370-01 2 80530979 80530979 C A LRRTM1 5'UTR 0.29 TCGA-CR-7370-01 2 89246879 89246879 G T IGKV1-5 Silent p.I97I 0.29 TCGA-CR-7370-01 2 89309940 89309940 G T IGKV1-9 Silent p.V5V 0.23 TCGA-CR-7370-01 2 89326800 89326800 T C IGKV3-11 Silent p.A71A 0.21 TCGA-CR-7370-01 2 89544345 89544345 G T IGKV2-30 Silent p.G93G 0.29 TCGA-CR-7370-01 2 90044350 90044350 G T IGKV2D-24 Missense_Mutation p.G91W 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7370-01 2 90139107 90139107 G T IGKV1D-16 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-CR-7370-01 2 90229081 90229081 C A IGKV1D-42 Missense_Mutation p.P6H 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-CR-7370-01 2 95952298 95952298 C A PROM2 Silent p.V673V 0.44 TCGA-CR-7370-01 2 97165148 97165148 C T NEURL3 RNA 0.22 TCGA-CR-7370-01 3 100621495 100621495 C A ABI3BP Missense_Mutation p.A106S 0.39 deleterious(0.01) benign(0.364) TCGA-CR-7370-01 3 113099870 113099870 T C WDR52 Missense_Mutation p.Y643C 0.40 deleterious(0.01) possibly_damaging(0.54) TCGA-CR-7370-01 3 121352001 121352001 C A HCLS1 Silent p.G307G 0.62 TCGA-CR-7370-01 3 122277281 122277281 C A PARP9 Missense_Mutation p.G17C 0.46 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-CR-7370-01 3 137822454 137822454 G A DZIP1L Silent p.G120G 0.40 TCGA-CR-7370-01 3 137850025 137850025 A T A4GNT Missense_Mutation p.L25Q 0.41 tolerated(0.24) benign(0.022) TCGA-CR-7370-01 3 141682777 141682779 CTC TT TFDP2 Frame_Shift_Del p.R254Kfs*15 0.25 TCGA-CR-7370-01 3 145917674 145917674 G A PLSCR4 Nonsense_Mutation p.R184* 0.50 TCGA-CR-7370-01 3 14745912 14745912 C T C3orf20 Missense_Mutation p.A316V 0.64 tolerated(0.07) possibly_damaging(0.801) TCGA-CR-7370-01 3 151082807 151082807 G C MED12L Missense_Mutation p.V965L 0.42 tolerated(0.36) possibly_damaging(0.749) TCGA-CR-7370-01 3 155218533 155218533 G T PLCH1 Missense_Mutation p.D573E 0.10 tolerated(0.54) benign(0.007) TCGA-CR-7370-01 3 155632262 155632262 A G GMPS Missense_Mutation p.D314G 0.09 tolerated(0.4) benign(0.001) TCGA-CR-7370-01 3 157099093 157099093 G T VEPH1 Missense_Mutation p.L327I 0.46 tolerated(0.08) possibly_damaging(0.839) TCGA-CR-7370-01 3 16254215 16254215 G T GALNT15 Missense_Mutation p.G446V 0.58 deleterious(0.02) possibly_damaging(0.516) TCGA-CR-7370-01 3 164737463 164737463 A T SI Missense_Mutation p.V1117E 0.19 deleterious(0.02) benign(0.104) TCGA-CR-7370-01 3 164750444 164750444 G T SI Missense_Mutation p.Q868K 0.42 tolerated(1) benign(0.002) TCGA-CR-7370-01 3 183776222 183776222 C A HTR3C Missense_Mutation p.S189R 0.06 tolerated(0.21) benign(0.005) TCGA-CR-7370-01 3 183776244 183776244 G A HTR3C Missense_Mutation p.E197K 0.07 tolerated(0.19) benign(0.033) TCGA-CR-7370-01 3 183778250 183778250 C T HTR3C 3'UTR 0.21 TCGA-CR-7370-01 3 185363192 185363192 C G IGF2BP2 3'UTR 0.50 TCGA-CR-7370-01 3 186944202 186944202 G T MASP1 Silent p.I516I 0.19 TCGA-CR-7370-01 3 193042775 193042775 C A ATP13A5 Missense_Mutation p.G518C 0.11 deleterious(0) probably_damaging(0.988) TCGA-CR-7370-01 3 194149602 194149602 C T ATP13A3 Silent p.L973L 0.11 TCGA-CR-7370-01 3 194344010 194344010 C A TMEM44 Silent p.L185L 0.61 TCGA-CR-7370-01 3 195479980 195479980 G A MUC4 Silent p.A5150A 0.28 TCGA-CR-7370-01 3 197707351 197707351 G A LMLN Missense_Mutation p.C235Y 0.05 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 3 3081938 3081938 T G CNTN4 Missense_Mutation p.V794G 0.58 deleterious(0.02) possibly_damaging(0.597) TCGA-CR-7370-01 3 35778754 35778754 G A ARPP21 Missense_Mutation p.G481E 0.52 deleterious(0.02) possibly_damaging(0.501) TCGA-CR-7370-01 3 38889201 38889201 G T SCN11A Missense_Mutation p.H1454N 0.65 tolerated(0.24) benign(0.002) TCGA-CR-7370-01 3 38951680 38951680 A T SCN11A Nonsense_Mutation p.Y326* 0.69 TCGA-CR-7370-01 3 47890739 47890739 C T DHX30 Missense_Mutation p.S996L 0.09 deleterious(0.02) possibly_damaging(0.487) TCGA-CR-7370-01 3 49690362 49690362 G C BSN Missense_Mutation p.E1125Q 0.59 unknown(0) TCGA-CR-7370-01 3 51982442 51982442 C T PARP3 Silent p.L523L 0.72 TCGA-CR-7370-01 3 52945182 52945182 C A SFMBT1 Missense_Mutation p.K581N 0.65 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 3 99513341 99513341 C A COL8A1 Missense_Mutation p.P199Q 0.45 deleterious(0.05) unknown(0) TCGA-CR-7370-01 4 101111077 101111077 C A DDIT4L Missense_Mutation p.G22C 0.62 deleterious(0.05) benign(0.319) TCGA-CR-7370-01 4 103870556 103870556 C A SLC9B1 Missense_Mutation p.M80I 0.49 tolerated(0.09) benign(0.001) TCGA-CR-7370-01 4 114238907 114238907 C T ANK2 Missense_Mutation p.A913V 0.62 benign(0.266) TCGA-CR-7370-01 4 114275560 114275560 C T ANK2 Missense_Mutation p.S1929L 0.31 possibly_damaging(0.597) TCGA-CR-7370-01 4 122075747 122075747 C A TNIP3 Nonsense_Mutation p.E228* 0.58 TCGA-CR-7370-01 4 122075748 122075748 C A TNIP3 Missense_Mutation p.K227N 0.55 deleterious(0.01) benign(0.145) TCGA-CR-7370-01 4 125591844 125591844 C T ANKRD50 Missense_Mutation p.C863Y 0.68 deleterious(0) probably_damaging(0.996) TCGA-CR-7370-01 4 126336137 126336137 G T FAT4 Missense_Mutation p.D2007Y 0.60 probably_damaging(1) TCGA-CR-7370-01 4 128637585 128637585 C T INTU Silent p.T941T 0.56 TCGA-CR-7370-01 4 155665906 155665906 G A LRAT Missense_Mutation p.R143Q 0.65 tolerated(0.6) benign(0.01) TCGA-CR-7370-01 4 156831334 156831334 C A TDO2 Missense_Mutation p.Q197K 0.57 tolerated(0.44) benign(0.012) TCGA-CR-7370-01 4 187629118 187629120 CCG A FAT1 Frame_Shift_Del p.S621Lfs*54 0.57 TCGA-CR-7370-01 4 190878615 190878615 A T FRG1 Silent p.I165I 0.16 TCGA-CR-7370-01 4 38828702 38828702 T A TLR6 3'UTR 0.46 TCGA-CR-7370-01 4 49000563 49000563 C T CWH43 Missense_Mutation p.T267I 0.70 tolerated(0.64) benign(0.004) TCGA-CR-7370-01 4 56744196 56744196 G A EXOC1 Silent p.K396K 0.59 TCGA-CR-7370-01 4 77039260 77039260 G A NUP54 Nonsense_Mutation p.Q418* 0.14 TCGA-CR-7370-01 4 94377028 94377028 G C GRID2 Missense_Mutation p.L587F 0.09 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 4 96762223 96762223 G A PDHA2 Missense_Mutation p.V308I 0.63 tolerated(0.14) benign(0.016) TCGA-CR-7370-01 5 114472790 114472790 A G TRIM36 Missense_Mutation p.F385L 0.46 tolerated(0.08) probably_damaging(0.993) TCGA-CR-7370-01 5 131533904 131533904 T A P4HA2 Missense_Mutation p.N456Y 0.77 tolerated(0.38) probably_damaging(1) TCGA-CR-7370-01 5 137593402 137593402 G T GFRA3 Silent p.P237P 0.74 TCGA-CR-7370-01 5 139231313 139231313 G T NRG2 Missense_Mutation p.P550T 0.18 deleterious(0) probably_damaging(0.995) TCGA-CR-7370-01 5 140188217 140188217 C A PCDHA4 Missense_Mutation p.A482E 0.55 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-CR-7370-01 5 140188563 140188563 G A PCDHA4 Silent p.V597V 0.68 TCGA-CR-7370-01 5 140209620 140209620 G T PCDHA6 Silent p.L648L 0.69 TCGA-CR-7370-01 5 140257259 140257259 G T PCDHA12 Silent p.P734P 0.87 TCGA-CR-7370-01 5 140712446 140712446 T A PCDHGA1 Nonsense_Mutation p.L732* 0.59 TCGA-CR-7370-01 5 140720611 140720611 G T PCDHGA2 Silent p.L691L 0.60 TCGA-CR-7370-01 5 140789266 140789266 G T PCDHGB6 Silent p.L499L 0.71 TCGA-CR-7370-01 5 140789267 140789267 G T PCDHGB6 Missense_Mutation p.A500S 0.71 tolerated(0.16) benign(0.053) TCGA-CR-7370-01 5 140811002 140811002 G A PCDHGA12 Missense_Mutation p.A226T 0.72 tolerated_low_confidence(0.31) benign(0.229) TCGA-CR-7370-01 5 150275854 150275854 T C ZNF300 Missense_Mutation p.Q332R 0.62 tolerated(0.15) probably_damaging(0.992) TCGA-CR-7370-01 5 153077675 153077675 A T GRIA1 Silent p.S412S 0.52 TCGA-CR-7370-01 5 156184595 156184595 G T SGCD Missense_Mutation p.L193F 0.79 deleterious(0) probably_damaging(0.971) TCGA-CR-7370-01 5 159821207 159821207 C A C5orf54 Nonsense_Mutation p.E431* 0.66 TCGA-CR-7370-01 5 160029629 160029629 G A ATP10B Silent p.Y1106Y 0.69 TCGA-CR-7370-01 5 160033898 160033898 C A ATP10B Nonsense_Mutation p.E1012* 0.54 TCGA-CR-7370-01 5 167655022 167655022 A G TENM2 Missense_Mutation p.I1803V 0.74 tolerated(1) benign(0.01) TCGA-CR-7370-01 5 176318482 176318482 C G HK3 Missense_Mutation p.G56R 0.53 tolerated(0.56) benign(0.005) TCGA-CR-7370-01 5 176489129 176489129 C T ZNF346 Silent p.V258V 0.57 TCGA-CR-7370-01 5 178770807 178770807 G A ADAMTS2 Silent p.A165A 0.40 TCGA-CR-7370-01 5 23522738 23522738 A G PRDM9 Missense_Mutation p.Q209R 0.54 deleterious(0.01) benign(0.246) TCGA-CR-7370-01 5 23527110 23527110 G A PRDM9 Missense_Mutation p.C638Y 0.22 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 5 31323142 31323142 C A CDH6 Silent p.P700P 0.21 TCGA-CR-7370-01 5 33461070 33461070 G A TARS Silent p.G471G 0.26 TCGA-CR-7370-01 5 35654802 35654802 C T SPEF2 Nonsense_Mutation p.Q318* 0.51 TCGA-CR-7370-01 5 36184011 36184011 T G SKP2 3'UTR 0.09 TCGA-CR-7370-01 5 40681505 40681505 G T PTGER4 Missense_Mutation p.G137V 0.43 tolerated(0.07) benign(0.166) TCGA-CR-7370-01 5 41038946 41038946 C A MROH2B Missense_Mutation p.M702I 0.26 tolerated(1) benign(0.005) TCGA-CR-7370-01 5 43280809 43280809 C G NIM1K Missense_Mutation p.S430C 0.44 deleterious(0) probably_damaging(0.99) TCGA-CR-7370-01 5 43382139 43382139 G T CCL28 Silent p.R69R 0.16 TCGA-CR-7370-01 5 5191795 5191795 C A ADAMTS16 Intron 0.46 TCGA-CR-7370-01 5 54275042 54275042 A T ESM1 3'UTR 0.40 TCGA-CR-7370-01 5 6609987 6609987 T A NSUN2 Silent p.A425A 0.49 TCGA-CR-7370-01 5 677917 677917 C A TPPP Missense_Mutation p.D87Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-CR-7370-01 5 71492252 71492252 G A MAP1B Missense_Mutation p.D1024N 0.76 possibly_damaging(0.734) TCGA-CR-7370-01 5 77385258 77385258 G T AP3B1 Missense_Mutation p.L846I 0.65 deleterious(0) benign(0.364) TCGA-CR-7370-01 5 7867502 7867502 C T FASTKD3 Missense_Mutation p.G232D 0.21 tolerated(0.22) benign(0.018) TCGA-CR-7370-01 5 7897181 7897181 A G MTRR Silent p.K618K 0.44 TCGA-CR-7370-01 5 9202224 9202224 C A SEMA5A Missense_Mutation p.G259C 0.33 deleterious(0) probably_damaging(0.971) TCGA-CR-7370-01 5 92923837 92923837 G C NR2F1 Silent p.L226L 0.59 TCGA-CR-7370-01 6 105406156 105406156 C G LIN28B Missense_Mutation p.H65D 0.39 deleterious(0.02) possibly_damaging(0.531) TCGA-CR-7370-01 6 105548851 105548851 A C BVES 3'UTR 0.35 TCGA-CR-7370-01 6 107361208 107361208 G A C6orf203 Missense_Mutation p.V87I 0.32 tolerated(1) benign(0.001) TCGA-CR-7370-01 6 110301114 110301114 G T GPR6 Missense_Mutation p.A267S 0.16 tolerated(0.1) possibly_damaging(0.468) TCGA-CR-7370-01 6 117130668 117130668 A - GPRC6A Frame_Shift_Del p.C103Vfs*12 0.22 TCGA-CR-7370-01 6 117665282 117665282 C A ROS1 Missense_Mutation p.V1489F 0.35 deleterious(0) possibly_damaging(0.747) TCGA-CR-7370-01 6 125231810 125231810 A G RP11-510H23.1 RNA 0.36 TCGA-CR-7370-01 6 129704301 129704301 G T LAMA2 Missense_Mutation p.G1665V 0.37 tolerated(0.15) benign(0.117) TCGA-CR-7370-01 6 132722446 132722446 G T MOXD1 Silent p.G40G 0.44 TCGA-CR-7370-01 6 132938351 132938351 C T TAAR2 Missense_Mutation p.G332S 0.53 deleterious(0.04) probably_damaging(1) TCGA-CR-7370-01 6 133073775 133073775 A G VNN2 Silent p.Y217Y 0.29 TCGA-CR-7370-01 6 133091300 133091300 C A SLC18B1 3'UTR 0.50 TCGA-CR-7370-01 6 135239568 135239568 G T ALDH8A1 Silent p.I483I 0.30 TCGA-CR-7370-01 6 137814953 137814953 G C OLIG3 Missense_Mutation p.R119G 0.24 deleterious(0) probably_damaging(0.993) TCGA-CR-7370-01 6 150290448 150290448 T C ULBP1 Missense_Mutation p.W193R 0.42 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 6 152652521 152652521 G T SYNE1 Missense_Mutation p.H4433Q 0.54 probably_damaging(0.977) TCGA-CR-7370-01 6 153347653 153347653 C A RGS17 Missense_Mutation p.G49W 0.22 deleterious(0.01) possibly_damaging(0.773) TCGA-CR-7370-01 6 15468903 15468903 G T JARID2 Silent p.S208S 0.41 TCGA-CR-7370-01 6 158454617 158454617 G T SYNJ2 Missense_Mutation p.V206F 0.40 tolerated(0.07) benign(0.175) TCGA-CR-7370-01 6 165752772 165752772 C A PDE10A Missense_Mutation p.G725C 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-CR-7370-01 6 166581041 166581041 C G T Silent p.L13L 0.38 TCGA-CR-7370-01 6 168457935 168457935 G T FRMD1 Missense_Mutation p.P498T 0.73 tolerated(0.85) possibly_damaging(0.893) TCGA-CR-7370-01 6 168464370 168464370 C A FRMD1 Missense_Mutation p.G239C 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 6 27925284 27925284 G A OR2B6 Missense_Mutation p.R89K 0.66 tolerated(0.5) benign(0.001) TCGA-CR-7370-01 6 29527575 29527576 TG - UBD 5'UTR 0.42 TCGA-CR-7370-01 6 33146751 33146751 C A COL11A2 Splice_Site p.X452_splice 0.59 TCGA-CR-7370-01 6 33264212 33264212 T C RGL2 Missense_Mutation p.D150G 0.63 tolerated(0.23) benign(0) TCGA-CR-7370-01 6 40399511 40399511 G A LRFN2 Missense_Mutation p.R448W 0.23 tolerated(0.08) possibly_damaging(0.892) TCGA-CR-7370-01 6 41653831 41653831 G T TFEB Silent p.I316I 0.19 TCGA-CR-7370-01 6 43020081 43020081 C T CUL7 Missense_Mutation p.S201N 0.10 deleterious(0) probably_damaging(0.994) TCGA-CR-7370-01 6 43109969 43109969 G T PTK7 Missense_Mutation p.G668V 0.42 deleterious(0) probably_damaging(0.993) TCGA-CR-7370-01 6 54191661 54191661 C T TINAG Missense_Mutation p.R191C 0.38 deleterious(0) probably_damaging(0.91) TCGA-CR-7370-01 6 54214671 54214671 C A TINAG Missense_Mutation p.P353T 0.18 deleterious(0) possibly_damaging(0.843) TCGA-CR-7370-01 6 56481471 56481471 G A DST Intron 0.21 TCGA-CR-7370-01 6 57512611 57512611 C T PRIM2 3'UTR 0.14 TCGA-CR-7370-01 6 63989916 63989916 G A LGSN 3'UTR 0.15 TCGA-CR-7370-01 6 74116174 74116174 C A DDX43 Missense_Mutation p.P299T 0.52 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 6 96651708 96651708 T A FUT9 Missense_Mutation p.V226D 0.29 deleterious(0) possibly_damaging(0.797) TCGA-CR-7370-01 7 100192139 100192139 C A FBXO24 Missense_Mutation p.N347K 0.44 deleterious(0.05) benign(0.403) TCGA-CR-7370-01 7 100490790 100490790 A G ACHE Missense_Mutation p.L355P 0.27 tolerated(0.06) probably_damaging(0.991) TCGA-CR-7370-01 7 100679156 100679156 G A MUC17 Missense_Mutation p.V1487I 0.29 unknown(0) TCGA-CR-7370-01 7 103389906 103389906 G T RELN Missense_Mutation p.S208Y 0.45 deleterious(0.01) benign(0.36) TCGA-CR-7370-01 7 107198559 107198559 C T COG5 Silent p.G63G 0.20 TCGA-CR-7370-01 7 107704266 107704266 C T LAMB4 Missense_Mutation p.A1001T 0.32 deleterious(0.04) benign(0.006) TCGA-CR-7370-01 7 112097034 112097034 A G IFRD1 Missense_Mutation p.E117G 0.40 deleterious(0) possibly_damaging(0.907) TCGA-CR-7370-01 7 113518193 113518193 G T PPP1R3A Nonsense_Mutation p.S985* 0.11 TCGA-CR-7370-01 7 121513485 121513485 C G PTPRZ1 5'UTR 0.40 TCGA-CR-7370-01 7 122338457 122338457 G A RNF133 Silent p.L172L 0.34 TCGA-CR-7370-01 7 122338764 122338764 C A RNF133 Missense_Mutation p.R70I 0.44 deleterious(0.04) benign(0.312) TCGA-CR-7370-01 7 123197486 123197486 C G NDUFA5 Missense_Mutation p.G13A 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7370-01 7 127224972 127224972 T A GCC1 Missense_Mutation p.T89S 0.36 tolerated(0.33) benign(0.001) TCGA-CR-7370-01 7 140125809 140125809 C T RAB19 Silent p.V171V 0.25 TCGA-CR-7370-01 7 141478516 141478516 G A TAS2R4 Silent p.R76R 0.35 TCGA-CR-7370-01 7 142000815 142000815 C A TRBV2 5'UTR 0.13 TCGA-CR-7370-01 7 142459743 142459743 G A PRSS1 Missense_Mutation p.D107N 0.06 deleterious(0.03) probably_damaging(0.967) TCGA-CR-7370-01 7 143657597 143657597 C T OR2F1 Silent p.S178S 0.38 TCGA-CR-7370-01 7 148312582 148312582 T A C7orf33 3'UTR 0.46 TCGA-CR-7370-01 7 148800930 148800930 C T ZNF425 Missense_Mutation p.R678K 0.36 tolerated(1) benign(0.009) TCGA-CR-7370-01 7 150164299 150164299 G A GIMAP8 Silent p.K171K 0.05 TCGA-CR-7370-01 7 150784095 150784095 G T AGAP3 Silent p.L89L 0.36 TCGA-CR-7370-01 7 151877135 151877135 T C KMT2C Missense_Mutation p.Q2409R 0.35 benign(0.011) TCGA-CR-7370-01 7 21747362 21747362 C T DNAH11 Missense_Mutation p.P2205S 0.35 possibly_damaging(0.856) TCGA-CR-7370-01 7 23221586 23221586 C G NUPL2 5'UTR 0.60 TCGA-CR-7370-01 7 23682551 23682551 G T CCDC126 Silent p.A80A 0.40 TCGA-CR-7370-01 7 31864484 31864484 G C PDE1C Missense_Mutation p.S528W 0.30 tolerated(0.07) benign(0.087) TCGA-CR-7370-01 7 34009964 34009964 G A BMPER Silent p.G142G 0.36 TCGA-CR-7370-01 7 43917780 43917780 C A URGCP Missense_Mutation p.V428L 0.29 deleterious(0.03) benign(0.026) TCGA-CR-7370-01 7 44609415 44609415 G A DDX56 Silent p.L404L 0.46 TCGA-CR-7370-01 7 538156 538156 C A PDGFA 3'UTR 0.63 TCGA-CR-7370-01 7 57194381 57194381 C T ZNF479 Silent p.E28E 0.38 TCGA-CR-7370-01 7 64525420 64525420 C T SNORA22 5'Flank 0.24 TCGA-CR-7370-01 7 72718297 72718297 C A NSUN5 Silent p.A288A 0.35 TCGA-CR-7370-01 7 82584629 82584629 T A PCLO Silent p.V1880V 0.39 TCGA-CR-7370-01 7 87173503 87173503 G T ABCB1 Missense_Mutation p.A718D 0.36 deleterious(0) probably_damaging(0.997) TCGA-CR-7370-01 7 87910388 87910388 G A STEAP4 Missense_Mutation p.L331F 0.32 deleterious(0.03) benign(0.319) TCGA-CR-7370-01 7 89856546 89856546 A G STEAP2 Missense_Mutation p.I252V 0.37 tolerated(0.69) benign(0.011) TCGA-CR-7370-01 7 91570285 91570285 G T AKAP9 5'UTR 0.48 TCGA-CR-7370-01 7 92099669 92099669 G A ERVW-1 Silent p.L9L 0.09 TCGA-CR-7370-01 7 92143172 92143172 C G PEX1 Missense_Mutation p.R450T 0.36 tolerated(0.59) benign(0.001) TCGA-CR-7370-01 7 92848626 92848626 G A HEPACAM2 Missense_Mutation p.P73L 0.39 tolerated(0.05) benign(0.012) TCGA-CR-7370-01 7 99564629 99564629 G T AZGP1 Missense_Mutation p.S298R 0.38 deleterious(0) possibly_damaging(0.541) TCGA-CR-7370-01 8 10782284 10782284 C T XKR6 Missense_Mutation p.R274Q 0.06 deleterious(0.02) probably_damaging(0.974) TCGA-CR-7370-01 8 12040041 12040041 C T FAM86B1 3'UTR 0.26 TCGA-CR-7370-01 8 13072141 13072141 G C DLC1 Intron 0.25 TCGA-CR-7370-01 8 139149455 139149455 C G FAM135B Missense_Mutation p.R1317P 0.17 deleterious(0) probably_damaging(0.995) TCGA-CR-7370-01 8 13959908 13959908 G T SGCZ Missense_Mutation p.H241N 0.25 tolerated(0.5) benign(0.07) TCGA-CR-7370-01 8 13959909 13959909 G T SGCZ Silent p.L240L 0.25 TCGA-CR-7370-01 8 139603718 139603718 C T COL22A1 Missense_Mutation p.G1548S 0.13 unknown(0) TCGA-CR-7370-01 8 142486153 142486153 C G MROH5 Intron 0.21 TCGA-CR-7370-01 8 146017246 146017246 C A RPL8 Silent p.R64R 0.16 TCGA-CR-7370-01 8 1497720 1497720 G A DLGAP2 Silent p.K287K 0.21 TCGA-CR-7370-01 8 23243466 23243466 T G LOXL2 Intron 0.28 TCGA-CR-7370-01 8 26721992 26721992 C G ADRA1A Missense_Mutation p.W165C 0.49 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 8 3226842 3226842 C A CSMD1 Missense_Mutation p.G945W 0.55 probably_damaging(1) TCGA-CR-7370-01 8 53025853 53025853 T G ST18 Missense_Mutation p.T1017P 0.26 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 8 55540739 55540739 G T RP1 Missense_Mutation p.A1433S 0.26 tolerated(0.12) benign(0.114) TCGA-CR-7370-01 8 56879420 56879420 G T LYN Nonsense_Mutation p.E313* 0.20 TCGA-CR-7370-01 8 59514633 59514633 C A NSMAF Missense_Mutation p.R401L 0.26 deleterious(0) probably_damaging(0.966) TCGA-CR-7370-01 8 59548030 59548030 G C NSMAF Missense_Mutation p.I106M 0.05 tolerated(0.12) benign(0.037) TCGA-CR-7370-01 8 62602264 62602264 C A ASPH Intron 0.13 TCGA-CR-7370-01 8 65493499 65493499 G A BHLHE22 Missense_Mutation p.R51Q 0.60 tolerated_low_confidence(0.08) benign(0.272) TCGA-CR-7370-01 8 77767550 77767550 C - ZFHX4 Frame_Shift_Del p.D2799Ifs*35 0.35 TCGA-CR-7370-01 8 87126074 87126074 C A ATP6V0D2 Silent p.S89S 0.16 TCGA-CR-7370-01 8 89128829 89128829 G A MMP16 Silent p.T330T 0.56 TCGA-CR-7370-01 8 90777691 90777691 G A RIPK2 Silent p.Q150Q 0.08 TCGA-CR-7370-01 8 91081386 91081386 A T CALB1 Missense_Mutation p.M104K 0.11 deleterious(0) benign(0.296) TCGA-CR-7370-01 8 92407405 92407405 G - SLC26A7 3'Flank 0.17 TCGA-CR-7370-01 8 93003956 93003956 C T RUNX1T1 Missense_Mutation p.R312H 0.14 tolerated(0.08) benign(0.177) TCGA-CR-7370-01 8 93027017 93027017 G A RUNX1T1 Silent p.A97A 0.14 TCGA-CR-7370-01 9 101017708 101017708 C G TBC1D2 Missense_Mutation p.R39P 0.30 tolerated(0.51) benign(0.007) TCGA-CR-7370-01 9 101749627 101749627 C A COL15A1 Missense_Mutation p.L234M 0.11 tolerated(0.21) possibly_damaging(0.602) TCGA-CR-7370-01 9 116858353 116858353 G C KIF12 Missense_Mutation p.I153M 0.37 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 9 120476132 120476132 C A TLR4 Missense_Mutation p.L576I 0.33 tolerated(0.29) benign(0.39) TCGA-CR-7370-01 9 131331097 131331097 A T SPTAN1 Missense_Mutation p.N95I 0.85 deleterious(0.01) probably_damaging(0.954) TCGA-CR-7370-01 9 137293648 137293648 G T RXRA Missense_Mutation p.V67F 0.75 tolerated(0.09) probably_damaging(0.93) TCGA-CR-7370-01 9 137998625 137998625 C A OLFM1 Missense_Mutation p.P218H 0.59 deleterious(0) probably_damaging(0.988) TCGA-CR-7370-01 9 139282935 139282935 G T SNAPC4 Missense_Mutation p.Q362K 0.22 deleterious(0.01) possibly_damaging(0.767) TCGA-CR-7370-01 9 139925073 139925073 G A FUT7 3'UTR 0.19 TCGA-CR-7370-01 9 21971035 21971035 T A CDKN2A Missense_Mutation p.D108V 0.85 deleterious(0) probably_damaging(0.999) TCGA-CR-7370-01 9 32633172 32633172 G A TAF1L Silent p.G802G 0.32 TCGA-CR-7370-01 9 79634859 79634859 T A FOXB2 Missense_Mutation p.F97I 0.41 deleterious(0) unknown(0) TCGA-CR-7370-01 9 84532518 84532518 C T SPATA31D5P RNA 0.64 TCGA-CR-7370-01 9 84609214 84609214 T A SPATA31D1 Missense_Mutation p.C1277S 0.44 tolerated(0.13) benign(0.002) TCGA-CR-7370-01 X 104463830 104463830 G T TEX13A Missense_Mutation p.P349H 0.64 tolerated(0.1) benign(0.091) TCGA-CR-7370-01 X 110653518 110653519 AG C DCX Frame_Shift_Del p.S117Rfs*11 0.39 TCGA-CR-7370-01 X 110654066 110654066 A G DCX Missense_Mutation p.V46A 0.63 deleterious_low_confidence(0) unknown(0) TCGA-CR-7370-01 X 111090412 111090412 T A TRPC5 Missense_Mutation p.T544S 0.59 tolerated(0.29) benign(0.377) TCGA-CR-7370-01 X 12632926 12632926 G A FRMPD4 Silent p.P116P 0.24 TCGA-CR-7370-01 X 12905663 12905663 A G TLR7 Missense_Mutation p.N679S 0.22 tolerated(0.25) benign(0.007) TCGA-CR-7370-01 X 130220339 130220339 G T ARHGAP36 Missense_Mutation p.V440L 0.52 tolerated(1) possibly_damaging(0.888) TCGA-CR-7370-01 X 135429618 135429618 C A GPR112 Silent p.T1251T 0.11 TCGA-CR-7370-01 X 135431250 135431250 T G GPR112 Silent p.T1795T 0.22 TCGA-CR-7370-01 X 135574475 135574475 G A BRS3 Missense_Mutation p.E381K 0.14 deleterious(0.04) possibly_damaging(0.697) TCGA-CR-7370-01 X 154493403 154493403 G C RAB39B Silent p.R57R 0.60 TCGA-CR-7370-01 X 15543445 15543445 C G BMX Missense_Mutation p.Q263E 0.18 tolerated(0.32) benign(0.021) TCGA-CR-7370-01 X 18622489 18622489 A G CDKL5 Missense_Mutation p.Y482C 0.16 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-CR-7370-01 X 23723192 23723192 G A ACOT9 Missense_Mutation p.S342F 0.39 deleterious(0) probably_damaging(0.919) TCGA-CR-7370-01 X 27996918 27996918 G T DCAF8L1 3'UTR 0.26 TCGA-CR-7370-01 X 30260834 30260834 C A MAGEB4 Silent p.T194T 0.46 TCGA-CR-7370-01 X 30326619 30326619 G T NR0B1 Missense_Mutation p.R288S 0.27 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 X 30327199 30327199 C T NR0B1 Silent p.P94P 0.43 TCGA-CR-7370-01 X 30671548 30671548 C T GK 5'UTR 0.19 TCGA-CR-7370-01 X 3235181 3235181 T A MXRA5 Missense_Mutation p.R2181W 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 X 33146266 33146266 G A DMD Intron 0.17 TCGA-CR-7370-01 X 36122647 36122647 G T CHDC2 Missense_Mutation p.C295F 0.21 tolerated(0.36) benign(0.004) TCGA-CR-7370-01 X 40498350 40498350 G T CXorf38 Missense_Mutation p.Q128K 0.14 tolerated(1) benign(0) TCGA-CR-7370-01 X 47272966 47272966 T G ZNF157 Silent p.R498R 0.20 TCGA-CR-7370-01 X 47509902 47509902 C T ELK1 5'Flank 0.43 TCGA-CR-7370-01 X 48370283 48370283 G A PORCN Silent p.E111E 0.21 TCGA-CR-7370-01 X 48678561 48678561 G T HDAC6 Missense_Mutation p.G746W 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7370-01 X 48681696 48681696 G C HDAC6 Missense_Mutation p.D963H 0.18 tolerated(0.11) benign(0.091) TCGA-CR-7370-01 X 48762559 48762559 G A SLC35A2 Silent p.S209S 0.56 TCGA-CR-7370-01 X 48858649 48858649 C A GRIPAP1 5'UTR 0.48 TCGA-CR-7370-01 X 48979050 48979050 G T GPKOW Silent p.R85R 0.33 TCGA-CR-7370-01 X 48979051 48979051 G T GPKOW Silent p.A84A 0.33 TCGA-CR-7370-01 X 49099871 49099871 C T CCDC22 Silent p.G219G 0.30 TCGA-CR-7370-01 X 49108103 49108103 C T FOXP3 Intron 0.33 TCGA-CR-7370-01 X 49108105 49108105 G A FOXP3 Intron 0.31 TCGA-CR-7370-01 X 49173663 49173663 G C GAGE10 Missense_Mutation p.S75T 0.30 tolerated(0.25) probably_damaging(0.935) TCGA-CR-7370-01 X 49346267 49346267 C A GAGE12H Missense_Mutation p.F32L 0.24 tolerated(0.8) benign(0.007) TCGA-CR-7370-01 X 49646067 49646067 G A USP27X Missense_Mutation p.R386Q 0.47 deleterious(0.01) possibly_damaging(0.861) TCGA-CR-7370-01 X 49958928 49958928 C A AKAP4 Nonsense_Mutation p.E146* 0.54 TCGA-CR-7370-01 X 53105743 53105743 G T GPR173 5'UTR 0.30 TCGA-CR-7370-01 X 53172355 53172355 G A LINC01155 RNA 0.29 TCGA-CR-7370-01 X 53276218 53276218 G A IQSEC2 Silent p.D894D 0.16 TCGA-CR-7370-01 X 53455483 53455483 C G RIBC1 Missense_Mutation p.T151R 0.40 tolerated(0.14) benign(0.037) TCGA-CR-7370-01 X 53658553 53658553 G C HUWE1 Missense_Mutation p.T220R 0.21 possibly_damaging(0.736) TCGA-CR-7370-01 X 5821198 5821198 G T NLGN4X Silent p.L507L 0.22 TCGA-CR-7370-01 X 63413127 63413127 C T AMER1 Missense_Mutation p.A14T 0.19 tolerated_low_confidence(0.39) benign(0.003) TCGA-CR-7370-01 X 64957172 64957172 G T MSN Missense_Mutation p.R408L 0.24 tolerated(0.21) benign(0) TCGA-CR-7370-01 X 76939151 76939151 C G ATRX Missense_Mutation p.E533Q 0.55 probably_damaging(0.993) TCGA-CR-7370-01 X 7811940 7811940 C G VCX Missense_Mutation p.S168R 0.26 deleterious(0.04) unknown(0) TCGA-CR-7370-01 X 86087232 86087232 G A DACH2 3'UTR 0.56 TCGA-CR-7370-01 X 86890748 86890754 GCTCCAG - KLHL4 Frame_Shift_Del p.S634Ffs*21 0.52 TCGA-CR-7370-01 X 86919890 86919890 G A KLHL4 Silent p.L684L 0.60 TCGA-CR-7370-01 X 8997416 8997416 G A FAM9B Missense_Mutation p.L109F 0.14 tolerated(0.76) probably_damaging(0.996) TCGA-CR-7370-01 X 91133291 91133291 G T PCDH11X Missense_Mutation p.L684F 0.57 tolerated(0.17) benign(0.12) TCGA-CR-7370-01 X 91133292 91133292 G T PCDH11X Missense_Mutation p.V685F 0.57 deleterious(0) probably_damaging(0.98) TCGA-CR-7370-01 X 9862691 9862691 G T SHROOM2 Missense_Mutation p.G248V 0.17 deleterious(0.01) benign(0.044) TCGA-CR-7371-01 10 11047378 11047378 A G RP1-251M9.3 3'Flank 0.03 TCGA-CR-7371-01 10 116444079 116444079 C A ABLIM1 Missense_Mutation p.D12Y 0.16 tolerated_low_confidence(0.07) benign(0.03) TCGA-CR-7371-01 10 118969465 118969465 T C KCNK18 Silent p.D270D 0.16 TCGA-CR-7371-01 10 119768713 119768713 A T RAB11FIP2 Silent p.T445T 0.25 TCGA-CR-7371-01 10 122618278 122618278 G A WDR11 Missense_Mutation p.E108K 0.12 tolerated(0.09) possibly_damaging(0.621) TCGA-CR-7371-01 10 15655677 15655677 G C ITGA8 Missense_Mutation p.S512C 0.13 deleterious(0.03) possibly_damaging(0.778) TCGA-CR-7371-01 10 26414348 26414348 G A MYO3A Missense_Mutation p.R642Q 0.62 tolerated(1) benign(0.003) TCGA-CR-7371-01 10 34420402 34420402 C G PARD3 Missense_Mutation p.E1180Q 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-CR-7371-01 10 34420469 34420469 C G PARD3 Silent p.L1157L 0.11 TCGA-CR-7371-01 10 37440991 37440991 C T ANKRD30A Missense_Mutation p.P494L 0.19 tolerated(0.15) benign(0.076) TCGA-CR-7371-01 10 38344884 38344884 G A ZNF33A Missense_Mutation p.C611Y 0.15 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 10 43654256 43654256 G T CSGALNACT2 Missense_Mutation p.R252L 0.17 deleterious(0) possibly_damaging(0.753) TCGA-CR-7371-01 10 75457410 75457410 C T AGAP5 Missense_Mutation p.G35E 0.12 deleterious_low_confidence(0.05) probably_damaging(0.994) TCGA-CR-7371-01 10 88232004 88232004 C G WAPAL Missense_Mutation p.G664A 0.09 tolerated(0.12) probably_damaging(0.998) TCGA-CR-7371-01 11 105924580 105924580 T G KBTBD3 Missense_Mutation p.Q279P 0.07 tolerated(0.16) benign(0.017) TCGA-CR-7371-01 11 122930370 122930370 G A HSPA8 Missense_Mutation p.R311C 0.31 deleterious_low_confidence(0.03) benign(0.019) TCGA-CR-7371-01 11 124252330 124252330 G A OR8B2 Silent p.L304L 0.29 TCGA-CR-7371-01 11 125484217 125484217 A G STT3A Splice_Site p.X558_splice 0.08 TCGA-CR-7371-01 11 130318901 130318901 C T ADAMTS15 Silent p.F11F 0.12 TCGA-CR-7371-01 11 17482165 17482165 G T ABCC8 Missense_Mutation p.A294D 0.16 deleterious(0) possibly_damaging(0.737) TCGA-CR-7371-01 11 18741305 18741305 C A IGSF22 Silent p.L218L 0.11 TCGA-CR-7371-01 11 20639323 20639323 G T SLC6A5 Missense_Mutation p.G385W 0.10 deleterious(0) probably_damaging(0.996) TCGA-CR-7371-01 11 33768856 33768856 T C FBXO3 Silent p.P353P 0.29 TCGA-CR-7371-01 11 46637351 46637351 C G HARBI1 Missense_Mutation p.G146A 0.18 deleterious(0) probably_damaging(0.998) TCGA-CR-7371-01 11 4945474 4945474 G T OR51G1 Silent p.P32P 0.16 TCGA-CR-7371-01 11 55322242 55322242 C A OR4C15 Missense_Mutation p.L154I 0.21 tolerated_low_confidence(0.27) benign(0.09) TCGA-CR-7371-01 11 55322833 55322833 A T OR4C15 Missense_Mutation p.M351L 0.14 deleterious_low_confidence(0.04) benign(0.013) TCGA-CR-7371-01 11 56086330 56086330 C A OR8K3 Missense_Mutation p.P183H 0.19 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-CR-7371-01 11 5653889 5653889 G T TRIM34 Nonsense_Mutation p.E110* 0.14 TCGA-CR-7371-01 11 57118259 57118259 C T P2RX3 Silent p.I243I 0.13 TCGA-CR-7371-01 11 5862952 5862952 T A OR52E6 Missense_Mutation p.E59V 0.14 deleterious(0.01) benign(0.01) TCGA-CR-7371-01 11 59271774 59271774 C T OR4D11 Silent p.S242S 0.14 TCGA-CR-7371-01 11 60215208 60215208 T C MS4A5 Silent p.D193D 0.15 TCGA-CR-7371-01 11 63233609 63233609 G T HRASLS5 Silent p.L240L 0.11 TCGA-CR-7371-01 11 65744017 65744017 G A SART1 Missense_Mutation p.R575H 0.17 deleterious(0) probably_damaging(0.995) TCGA-CR-7371-01 11 68305161 68305161 C T PPP6R3 Missense_Mutation p.S10L 0.08 deleterious(0) benign(0.036) TCGA-CR-7371-01 11 6913477 6913477 C A OR2D2 Silent p.L85L 0.14 TCGA-CR-7371-01 11 7064307 7064307 G A NLRP14 Missense_Mutation p.M350I 0.14 tolerated(0.42) benign(0) TCGA-CR-7371-01 11 75851885 75851885 G A UVRAG Missense_Mutation p.E510K 0.06 tolerated_low_confidence(0.06) benign(0.275) TCGA-CR-7371-01 11 77301379 77301379 C A AQP11 Silent p.P114P 0.15 TCGA-CR-7371-01 11 7960962 7960962 C T OR10A3 Missense_Mutation p.V36M 0.27 tolerated(0.16) benign(0.128) TCGA-CR-7371-01 12 100955661 100955661 A T NR1H4 Splice_Site p.X370_splice 0.39 TCGA-CR-7371-01 12 106460569 106460569 G A NUAK1 3'UTR 0.10 TCGA-CR-7371-01 12 108589738 108589738 C T WSCD2 Silent p.P43P 0.17 TCGA-CR-7371-01 12 110205834 110205834 G T FAM222A Missense_Mutation p.A34S 0.11 tolerated(1) benign(0.001) TCGA-CR-7371-01 12 110475392 110475392 G A ANKRD13A 3'UTR 0.12 TCGA-CR-7371-01 12 110784230 110784230 G T ATP2A2 Missense_Mutation p.W1028C 0.15 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-CR-7371-01 12 119617367 119617367 G T HSPB8 Nonsense_Mutation p.E84* 0.10 TCGA-CR-7371-01 12 124008157 124008157 C T RILPL1 Silent p.E115E 0.25 TCGA-CR-7371-01 12 132281832 132281832 C G SFSWAP Missense_Mutation p.P934A 0.21 tolerated_low_confidence(0.11) unknown(0) TCGA-CR-7371-01 12 14018815 14018815 G T GRIN2B Missense_Mutation p.Q110K 0.20 deleterious(0) probably_damaging(0.949) TCGA-CR-7371-01 12 18854534 18854534 G C PLCZ1 Intron 0.17 TCGA-CR-7371-01 12 40076630 40076630 C A C12orf40 Missense_Mutation p.Q302K 0.24 tolerated(0.12) benign(0.015) TCGA-CR-7371-01 12 49495950 49495950 G A LMBR1L Missense_Mutation p.R295W 0.14 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 12 56332340 56332340 G C DGKA Missense_Mutation p.S132T 0.18 tolerated(0.16) probably_damaging(0.976) TCGA-CR-7371-01 12 58090152 58090152 T G OS9 Missense_Mutation p.V192G 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 12 8691819 8691819 C A CLEC4E Nonsense_Mutation p.G72* 0.12 TCGA-CR-7371-01 12 93196189 93196189 T C EEA1 Missense_Mutation p.I887M 0.09 tolerated(0.22) benign(0.003) TCGA-CR-7371-01 12 93219970 93219970 C A EEA1 Missense_Mutation p.S499I 0.14 deleterious(0.01) benign(0.318) TCGA-CR-7371-01 12 9984956 9984956 T C KLRF1 Missense_Mutation p.S44P 0.19 tolerated(0.25) probably_damaging(0.928) TCGA-CR-7371-01 13 101747987 101747987 C G NALCN Missense_Mutation p.K1069N 0.15 deleterious(0.02) benign(0.279) TCGA-CR-7371-01 13 19748110 19748110 C A TUBA3C Missense_Mutation p.G416W 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-7371-01 13 26154054 26154054 G T ATP8A2 Missense_Mutation p.R659L 0.33 tolerated(0.1) benign(0.194) TCGA-CR-7371-01 13 28589793 28589793 C A FLT3 Missense_Mutation p.G863C 0.26 deleterious(0.01) probably_damaging(1) TCGA-CR-7371-01 13 39425083 39425083 G C FREM2 Missense_Mutation p.E2194Q 0.19 tolerated(0.17) possibly_damaging(0.752) TCGA-CR-7371-01 13 39952599 39952599 C G LHFP Missense_Mutation p.Q150H 0.21 deleterious(0) probably_damaging(0.995) TCGA-CR-7371-01 13 52971717 52971717 C T THSD1 Missense_Mutation p.R224Q 0.16 tolerated(0.18) benign(0.004) TCGA-CR-7371-01 14 102028010 102028010 C G DIO3 Silent p.L59L 0.11 TCGA-CR-7371-01 14 20849805 20849805 G A TEP1 Silent p.L1489L 0.15 TCGA-CR-7371-01 14 22133982 22133982 C G OR4E2 Nonsense_Mutation p.S229* 0.13 TCGA-CR-7371-01 14 30066700 30066700 C G PRKD1 Missense_Mutation p.E811Q 0.16 tolerated(0.18) benign(0.082) TCGA-CR-7371-01 14 33684490 33684490 T A NPAS3 Silent p.P81P 0.14 TCGA-CR-7371-01 14 37754564 37754564 G T MIPOL1 Nonsense_Mutation p.E179* 0.17 TCGA-CR-7371-01 14 38679129 38679130 - T SSTR1 Frame_Shift_Ins p.V181Rfs*69 0.17 TCGA-CR-7371-01 14 38679680 38679680 C A SSTR1 Silent p.A362A 0.19 TCGA-CR-7371-01 14 42356976 42356976 G T LRFN5 Missense_Mutation p.S383I 0.15 tolerated(0.06) benign(0.091) TCGA-CR-7371-01 14 44975712 44975712 C A FSCB Missense_Mutation p.S160I 0.16 deleterious(0) probably_damaging(0.988) TCGA-CR-7371-01 14 44975773 44975773 A T FSCB Missense_Mutation p.W140R 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-CR-7371-01 14 52194577 52194577 C G FRMD6 Missense_Mutation p.Q567E 0.18 deleterious(0.04) benign(0.214) TCGA-CR-7371-01 14 74761852 74761852 T A ABCD4 Nonsense_Mutation p.R240* 0.23 TCGA-CR-7371-01 14 74874270 74874270 C T SYNDIG1L Missense_Mutation p.A229T 0.18 deleterious(0.02) benign(0.193) TCGA-CR-7371-01 14 88707107 88707107 T A KCNK10 Missense_Mutation p.S154C 0.20 deleterious(0.03) probably_damaging(1) TCGA-CR-7371-01 14 88904701 88904701 G C SPATA7 Missense_Mutation p.D579H 0.20 deleterious(0) benign(0.162) TCGA-CR-7371-01 14 89305909 89305909 A G TTC8 Silent p.Q86Q 0.12 TCGA-CR-7371-01 14 91780146 91780146 G A CCDC88C Nonsense_Mutation p.Q672* 0.25 TCGA-CR-7371-01 14 97022574 97022574 C T PAPOLA Missense_Mutation p.P610S 0.20 tolerated(0.32) benign(0.197) TCGA-CR-7371-01 15 100672232 100672232 C G ADAMTS17 Missense_Mutation p.Q567H 0.09 deleterious(0.02) possibly_damaging(0.879) TCGA-CR-7371-01 15 20170352 20170352 C T IGHV1OR15-9 Translation_Start_Site p.M1? 0.22 deleterious(0.02) benign(0.333) TCGA-CR-7371-01 15 23890179 23890179 G A MAGEL2 Missense_Mutation p.A301V 0.28 deleterious(0.01) benign(0.074) TCGA-CR-7371-01 15 33842467 33842467 C A RYR3 Silent p.R308R 0.35 TCGA-CR-7371-01 15 43067454 43067454 G A TTBK2 Missense_Mutation p.P626L 0.49 deleterious_low_confidence(0.04) benign(0) TCGA-CR-7371-01 15 50786338 50786338 G A USP8 Missense_Mutation p.G840E 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 15 69335123 69335123 G C NOX5 Missense_Mutation p.R542T 0.50 tolerated(0.06) benign(0.026) TCGA-CR-7371-01 15 77906424 77906424 C A LINGO1 Missense_Mutation p.A609S 0.39 tolerated(0.57) benign(0.012) TCGA-CR-7371-01 15 78393645 78393645 C G SH2D7 Missense_Mutation p.I350M 0.19 deleterious(0.01) benign(0.116) TCGA-CR-7371-01 16 11071128 11071128 G C CLEC16A Missense_Mutation p.D259H 0.13 deleterious(0) probably_damaging(0.999) TCGA-CR-7371-01 16 1996719 1996719 G C RPL3L Silent p.R286R 0.20 TCGA-CR-7371-01 16 30518132 30518132 G C ITGAL Silent p.L821L 0.15 TCGA-CR-7371-01 16 31073227 31073227 C T ZNF668 Missense_Mutation p.C364Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CR-7371-01 16 31502206 31502206 C T C16orf58 Missense_Mutation p.D453N 0.22 deleterious(0.05) possibly_damaging(0.677) TCGA-CR-7371-01 16 58198043 58198043 C A CSNK2A2 Missense_Mutation p.V329L 0.17 tolerated(0.68) benign(0) TCGA-CR-7371-01 16 71406097 71406097 C T CALB2 Nonsense_Mutation p.Q46* 0.18 TCGA-CR-7371-01 16 84808830 84808830 A T USP10 Silent p.A736A 0.25 TCGA-CR-7371-01 17 26107912 26107912 C T NOS2 Nonsense_Mutation p.W295* 0.21 TCGA-CR-7371-01 17 27085655 27085655 G - FAM222B Frame_Shift_Del p.P441Hfs*70 0.22 TCGA-CR-7371-01 17 44408689 44408689 G A LRRC37A Missense_Mutation p.S1349N 0.08 deleterious(0) probably_damaging(0.993) TCGA-CR-7371-01 17 45914142 45914142 C A LRRC46 Missense_Mutation p.L208M 0.10 tolerated(0.52) benign(0.047) TCGA-CR-7371-01 17 46135825 46135825 G T NFE2L1 Nonsense_Mutation p.E381* 0.26 TCGA-CR-7371-01 17 46867429 46867429 C T TTLL6 Missense_Mutation p.D422N 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 17 56620420 56620420 G C C17orf47 Silent p.T376T 0.18 TCGA-CR-7371-01 17 62122729 62122729 G A ERN1 Silent p.P881P 0.13 TCGA-CR-7371-01 17 64059084 64059084 T A CEP112 Missense_Mutation p.K357N 0.15 deleterious(0) probably_damaging(0.983) TCGA-CR-7371-01 17 72368159 72368159 C T GPR142 Missense_Mutation p.S270L 0.16 deleterious(0.05) probably_damaging(0.976) TCGA-CR-7371-01 17 72443133 72443133 C G GPRC5C Missense_Mutation p.S476C 0.14 tolerated_low_confidence(0.19) benign(0.032) TCGA-CR-7371-01 17 73498200 73498200 C A CASKIN2 Silent p.T985T 0.19 TCGA-CR-7371-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.25 tolerated(0.11) benign(0.308) TCGA-CR-7371-01 17 9143248 9143248 A G NTN1 Missense_Mutation p.Q593R 0.19 tolerated(0.08) probably_damaging(0.996) TCGA-CR-7371-01 18 20979546 20979546 C G TMEM241 Missense_Mutation p.R88T 0.11 deleterious(0) possibly_damaging(0.899) TCGA-CR-7371-01 18 22806305 22806305 G C ZNF521 Missense_Mutation p.S526C 0.09 deleterious(0.01) probably_damaging(0.935) TCGA-CR-7371-01 18 33828964 33828964 G T MOCOS Splice_Site p.X680_splice 0.25 TCGA-CR-7371-01 18 5397146 5397146 C G EPB41L3 Missense_Mutation p.E918Q 0.04 tolerated(0.28) benign(0.004) TCGA-CR-7371-01 18 72103843 72103843 G C FAM69C Missense_Mutation p.P385A 0.22 tolerated(0.06) benign(0.114) TCGA-CR-7371-01 19 1043352 1043352 G C ABCA7 Silent p.L270L 0.14 TCGA-CR-7371-01 19 12089972 12089972 G A ZNF763 3'UTR 0.13 TCGA-CR-7371-01 19 12297490 12297490 G A ZNF136 Silent p.V99V 0.12 TCGA-CR-7371-01 19 15754740 15754740 G A CYP4F3 Intron 0.22 TCGA-CR-7371-01 19 20807035 20807035 G C ZNF626 3'UTR 0.19 TCGA-CR-7371-01 19 20844270 20844270 T C ZNF626 5'UTR 0.23 TCGA-CR-7371-01 19 21132951 21132951 G A ZNF85 Missense_Mutation p.G544D 0.10 tolerated(0.09) benign(0.028) TCGA-CR-7371-01 19 31039948 31039948 C G ZNF536 Missense_Mutation p.S1141C 0.13 tolerated_low_confidence(0.06) benign(0.001) TCGA-CR-7371-01 19 34263714 34263714 G A CHST8 Missense_Mutation p.D341N 0.25 tolerated(0.77) benign(0.014) TCGA-CR-7371-01 19 3527705 3527705 G A FZR1 Missense_Mutation p.E183K 0.12 tolerated(0.07) benign(0.165) TCGA-CR-7371-01 19 36673999 36673999 C T ZNF565 Missense_Mutation p.R290H 0.15 tolerated(0.49) probably_damaging(0.973) TCGA-CR-7371-01 19 37367985 37367985 A G ZNF345 Missense_Mutation p.T85A 0.13 deleterious(0.01) benign(0.15) TCGA-CR-7371-01 19 4548323 4548323 G C SEMA6B Missense_Mutation p.S469C 0.11 tolerated(0.07) possibly_damaging(0.454) TCGA-CR-7371-01 19 4792971 4792971 G A FEM1A Missense_Mutation p.E369K 0.19 tolerated(0.12) benign(0.14) TCGA-CR-7371-01 19 51358194 51358194 C G KLK3 5'UTR 0.12 TCGA-CR-7371-01 19 52570837 52570837 C T ZNF841 Missense_Mutation p.E100K 0.12 tolerated(0.6) possibly_damaging(0.88) TCGA-CR-7371-01 19 54377171 54377171 C A MYADM Missense_Mutation p.H130N 0.17 tolerated(0.26) benign(0.06) TCGA-CR-7371-01 19 54756392 54756392 C T LILRB5 Missense_Mutation p.G499R 0.08 deleterious(0.03) benign(0.072) TCGA-CR-7371-01 19 55106219 55106219 G A LILRA1 Missense_Mutation p.E54K 0.16 tolerated(0.12) benign(0.113) TCGA-CR-7371-01 19 55148286 55148286 C T LILRB1 Missense_Mutation p.S639F 0.25 deleterious(0.01) possibly_damaging(0.543) TCGA-CR-7371-01 19 7830679 7830679 G C CLEC4M Missense_Mutation p.G124R 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7371-01 19 9056573 9056573 G A MUC16 Silent p.T10291T 0.10 TCGA-CR-7371-01 19 9068476 9068476 C T MUC16 Missense_Mutation p.D6324N 0.10 unknown(0) TCGA-CR-7371-01 1 110020605 110020605 T A SYPL2 Missense_Mutation p.S208T 0.24 tolerated(0.25) benign(0.339) TCGA-CR-7371-01 1 117656090 117656090 C G TRIM45 Silent p.V495V 0.36 TCGA-CR-7371-01 1 152279054 152279054 C T FLG Missense_Mutation p.A2770T 0.03 benign(0.341) TCGA-CR-7371-01 1 152283044 152283044 A G FLG Missense_Mutation p.S1440P 0.05 benign(0.307) TCGA-CR-7371-01 1 155240769 155240769 C G CLK2 Splice_Site p.X1_splice 0.10 TCGA-CR-7371-01 1 156621474 156621474 G A BCAN Silent p.T430T 0.15 TCGA-CR-7371-01 1 157667698 157667698 G T FCRL3 Missense_Mutation p.L104M 0.21 deleterious(0) probably_damaging(0.996) TCGA-CR-7371-01 1 158595971 158595971 C A SPTA1 Missense_Mutation p.D1959Y 0.17 deleterious(0) probably_damaging(0.992) TCGA-CR-7371-01 1 158724934 158724934 T G OR6K6 Missense_Mutation p.L110R 0.24 deleterious(0) probably_damaging(0.998) TCGA-CR-7371-01 1 159021690 159021690 C G IFI16 Missense_Mutation p.I573M 0.16 deleterious(0.01) possibly_damaging(0.809) TCGA-CR-7371-01 1 160160609 160160609 T A CASQ1 Missense_Mutation p.L23Q 0.21 tolerated(0.29) probably_damaging(0.973) TCGA-CR-7371-01 1 160209906 160209906 C G DCAF8 Missense_Mutation p.E102Q 0.10 tolerated(0.14) benign(0.355) TCGA-CR-7371-01 1 169511663 169511663 T A F5 Nonsense_Mutation p.K889* 0.18 TCGA-CR-7371-01 1 169511664 169511664 A T F5 Missense_Mutation p.H888Q 0.18 tolerated(0.06) benign(0.006) TCGA-CR-7371-01 1 175086104 175086104 G T TNN Missense_Mutation p.D717Y 0.17 deleterious(0.01) probably_damaging(0.948) TCGA-CR-7371-01 1 176525600 176525600 G C PAPPA2 Missense_Mutation p.E48Q 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.603) TCGA-CR-7371-01 1 181058479 181058479 G C IER5 Silent p.P147P 0.23 TCGA-CR-7371-01 1 196920114 196920114 G T CFHR2 Missense_Mutation p.C129F 0.13 deleterious(0) probably_damaging(0.998) TCGA-CR-7371-01 1 197403914 197403914 C A CRB1 Missense_Mutation p.T974N 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-CR-7371-01 1 203456020 203456020 G - PRELP 3'UTR 0.15 TCGA-CR-7371-01 1 204093816 204093816 G A SOX13 Missense_Mutation p.E475K 0.24 deleterious(0) probably_damaging(0.997) TCGA-CR-7371-01 1 214170122 214170122 G C PROX1 Missense_Mutation p.D82H 0.04 deleterious(0) probably_damaging(0.976) TCGA-CR-7371-01 1 215821936 215821936 G A USH2A Missense_Mutation p.T4839M 0.26 benign(0.16) TCGA-CR-7371-01 1 22157584 22157584 C G HSPG2 Splice_Site p.X3855_splice 0.14 TCGA-CR-7371-01 1 231076226 231076226 C A TTC13 Missense_Mutation p.R250L 0.15 deleterious(0.04) possibly_damaging(0.531) TCGA-CR-7371-01 1 236900470 236900470 G C ACTN2 Missense_Mutation p.E278Q 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7371-01 1 236979822 236979822 T A MTR Missense_Mutation p.V248E 0.21 deleterious(0) possibly_damaging(0.766) TCGA-CR-7371-01 1 241953918 241953918 C G WDR64 Missense_Mutation p.L963V 0.23 tolerated(0.14) possibly_damaging(0.855) TCGA-CR-7371-01 1 33330273 33330273 G T FNDC5 Missense_Mutation p.R134S 0.21 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-CR-7371-01 1 34092182 34092182 C T CSMD2 Splice_Site p.X1694_splice 0.31 TCGA-CR-7371-01 1 35580175 35580175 G C ZMYM1 Missense_Mutation p.G915A 0.17 tolerated(0.12) possibly_damaging(0.459) TCGA-CR-7371-01 1 45516821 45516821 G C ZSWIM5 Missense_Mutation p.L453V 0.38 tolerated(0.11) unknown(0) TCGA-CR-7371-01 1 55059688 55059688 C T ACOT11 Silent p.F149F 0.14 TCGA-CR-7371-01 1 98015229 98015229 T A DPYD Missense_Mutation p.T471S 0.31 tolerated(0.25) benign(0.082) TCGA-CR-7371-01 20 18393348 18393348 C G DZANK1 Missense_Mutation p.Q458H 0.11 deleterious(0.01) possibly_damaging(0.905) TCGA-CR-7371-01 20 2775946 2775946 C A CPXM1 Missense_Mutation p.A613S 0.12 tolerated(1) benign(0.371) TCGA-CR-7371-01 20 31620830 31620830 G A BPIFB6 Silent p.K46K 0.17 TCGA-CR-7371-01 20 3655732 3655732 T A ADAM33 Missense_Mutation p.Y92F 0.29 tolerated(0.31) probably_damaging(0.999) TCGA-CR-7371-01 20 57767508 57767508 C G ZNF831 Missense_Mutation p.D478E 0.21 tolerated(0.4) possibly_damaging(0.847) TCGA-CR-7371-01 20 61522236 61522236 T A DIDO1 Intron 0.43 TCGA-CR-7371-01 21 31988891 31988891 G T KRTAP20-1 Missense_Mutation p.G40C 0.20 unknown(0) TCGA-CR-7371-01 21 46021194 46021194 A T KRTAP10-7 Missense_Mutation p.T225S 0.08 tolerated(0.17) unknown(0) TCGA-CR-7371-01 21 46596174 46596174 G A ADARB1 Silent p.A186A 0.19 TCGA-CR-7371-01 22 17288660 17288660 A - XKR3 Frame_Shift_Del p.W102Gfs*6 0.22 TCGA-CR-7371-01 22 18769813 18769813 G A GGT3P RNA 0.21 TCGA-CR-7371-01 22 21064999 21064999 T C PI4KA Missense_Mutation p.Y2024C 0.19 deleterious(0) probably_damaging(0.994) TCGA-CR-7371-01 22 21799710 21799710 C T HIC2 Nonsense_Mutation p.Q176* 0.56 TCGA-CR-7371-01 22 29442723 29442723 C A ZNRF3 Missense_Mutation p.A255D 0.27 deleterious(0) probably_damaging(0.986) TCGA-CR-7371-01 22 30412531 30412531 G A MTMR3 Silent p.Q506Q 0.25 TCGA-CR-7371-01 22 30977575 30977575 C T PES1 Silent p.T229T 0.13 TCGA-CR-7371-01 22 32217595 32217595 G A DEPDC5 Missense_Mutation p.E660K 0.10 tolerated(0.1) probably_damaging(0.917) TCGA-CR-7371-01 22 43821067 43821067 G C MPPED1 Missense_Mutation p.A26P 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.497) TCGA-CR-7371-01 22 47033858 47033858 G T GRAMD4 Splice_Site p.X95_splice 0.25 TCGA-CR-7371-01 22 47095335 47095335 G T CERK Nonsense_Mutation p.S273* 0.12 TCGA-CR-7371-01 2 143712377 143712377 A G KYNU Splice_Site p.X125_splice 0.28 TCGA-CR-7371-01 2 144704616 144704616 C T GTDC1 3'UTR 0.09 TCGA-CR-7371-01 2 1664703 1664703 G C PXDN Missense_Mutation p.A596G 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-CR-7371-01 2 176043799 176043799 G C ATP5G3 Missense_Mutation p.I100M 0.21 deleterious(0.02) possibly_damaging(0.677) TCGA-CR-7371-01 2 179259094 179259094 G A OSBPL6 Silent p.E901E 0.26 TCGA-CR-7371-01 2 179579978 179579978 G A TTN Silent p.F8645F 0.29 TCGA-CR-7371-01 2 183731215 183731215 G A FRZB Silent p.L22L 0.55 TCGA-CR-7371-01 2 202005138 202005138 C T CFLAR Silent p.L194L 0.25 TCGA-CR-7371-01 2 220112912 220112912 C T STK16 Intron 0.15 TCGA-CR-7371-01 2 241815351 241815351 G A AGXT Splice_Site p.X259_splice 0.17 TCGA-CR-7371-01 2 242662623 242662623 A T ING5 Splice_Site p.X207_splice 0.23 TCGA-CR-7371-01 2 25050956 25050956 C T ADCY3 Silent p.E749E 0.11 TCGA-CR-7371-01 2 27247054 27247054 G C MAPRE3 Missense_Mutation p.D120H 0.18 deleterious(0) possibly_damaging(0.724) TCGA-CR-7371-01 2 32667279 32667279 C T BIRC6 Missense_Mutation p.S1364L 0.12 benign(0.001) TCGA-CR-7371-01 2 37217854 37217854 G C HEATR5B Silent p.V1878V 0.15 TCGA-CR-7371-01 2 74041177 74041177 C G C2orf78 Missense_Mutation p.S224C 0.19 deleterious(0.04) probably_damaging(0.971) TCGA-CR-7371-01 2 80097015 80097015 G T CTNNA2 Missense_Mutation p.G180V 0.13 tolerated(0.36) possibly_damaging(0.733) TCGA-CR-7371-01 2 80097016 80097016 G T CTNNA2 Silent p.G180G 0.13 TCGA-CR-7371-01 2 80530635 80530635 C G LRRTM1 Missense_Mutation p.V104L 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-CR-7371-01 2 89185464 89185464 C G IGKV4-1 Missense_Mutation p.S53C 0.14 deleterious(0.02) benign(0.005) TCGA-CR-7371-01 2 89399636 89399636 C T IGKV1-16 Missense_Mutation p.D23N 0.10 deleterious(0.01) benign(0.292) TCGA-CR-7371-01 2 96689186 96689186 G A GPAT2 Silent p.T633T 0.19 TCGA-CR-7371-01 3 100170695 100170695 C A LNP1 Missense_Mutation p.P97T 0.19 tolerated(0.34) possibly_damaging(0.804) TCGA-CR-7371-01 3 109046726 109046726 C A DPPA4 3'UTR 0.20 TCGA-CR-7371-01 3 126220752 126220752 G T UROC1 Silent p.A314A 0.19 TCGA-CR-7371-01 3 130463595 130463595 G A PIK3R4 Silent p.V156V 0.14 TCGA-CR-7371-01 3 130828653 130828653 G A NEK11 Missense_Mutation p.D115N 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-CR-7371-01 3 141622516 141622516 C G ATP1B3 Nonsense_Mutation p.S55* 0.17 TCGA-CR-7371-01 3 148562481 148562481 G T CPB1 Missense_Mutation p.K235N 0.11 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 3 158991603 158991603 C T IQCJ-SCHIP1 Intron 0.18 TCGA-CR-7371-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.13 deleterious(0.02) probably_damaging(0.959) TCGA-CR-7371-01 3 179051458 179051458 C T ZNF639 Nonsense_Mutation p.R236* 0.20 TCGA-CR-7371-01 3 180324283 180324283 G T TTC14 Missense_Mutation p.G355V 0.08 deleterious(0) probably_damaging(0.999) TCGA-CR-7371-01 3 184002748 184002748 C G ECE2 Intron 0.10 TCGA-CR-7371-01 3 194169313 194169313 C T ATP13A3 Silent p.V341V 0.16 TCGA-CR-7371-01 3 195451995 195451995 C G MUC20 Nonsense_Mutation p.S174* 0.12 TCGA-CR-7371-01 3 47712147 47712147 C A SMARCC1 Splice_Site p.X633_splice 0.22 TCGA-CR-7371-01 3 74350693 74350693 C A CNTN3 Nonsense_Mutation p.E651* 0.34 TCGA-CR-7371-01 3 74411068 74411068 C T CNTN3 Missense_Mutation p.G446E 0.23 deleterious(0.01) benign(0.11) TCGA-CR-7371-01 3 87325510 87325510 G A POU1F1 Silent p.L35L 0.17 TCGA-CR-7371-01 4 104035710 104035710 C T CENPE Splice_Site p.X2481_splice 0.17 TCGA-CR-7371-01 4 109769944 109769944 G C COL25A1 Missense_Mutation p.P469A 0.21 tolerated(0.06) possibly_damaging(0.868) TCGA-CR-7371-01 4 114376956 114376956 C T CAMK2D Silent p.G485G 0.13 TCGA-CR-7371-01 4 134084409 134084409 G T PCDH10 Silent p.T1025T 0.09 TCGA-CR-7371-01 4 139980635 139980635 C T ELF2 Silent p.A416A 0.24 TCGA-CR-7371-01 4 164466767 164466767 G C MARCH1 Missense_Mutation p.I184M 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-CR-7371-01 4 166795090 166795090 G A TLL1 Missense_Mutation p.V12M 0.06 tolerated_low_confidence(0.08) benign(0.002) TCGA-CR-7371-01 4 16760821 16760821 T A LDB2 Missense_Mutation p.L65F 0.16 deleterious(0.01) possibly_damaging(0.582) TCGA-CR-7371-01 4 176573010 176573010 A G GPM6A Silent p.N172N 0.11 TCGA-CR-7371-01 4 24801160 24801160 G T SOD3 Missense_Mutation p.C6F 0.18 tolerated(0.73) unknown(0) TCGA-CR-7371-01 4 47559897 47559897 G C ATP10D Missense_Mutation p.E681Q 0.12 tolerated(0.36) benign(0.219) TCGA-CR-7371-01 4 57221514 57221514 G A AASDH Nonsense_Mutation p.R313* 0.14 TCGA-CR-7371-01 4 89668809 89668809 C A FAM13A Silent p.A785A 0.15 TCGA-CR-7371-01 4 94693335 94693335 C G GRID2 Missense_Mutation p.P904A 0.06 tolerated_low_confidence(1) benign(0.019) TCGA-CR-7371-01 5 11236806 11236806 G T CTNND2 Silent p.A586A 0.18 TCGA-CR-7371-01 5 121355833 121355833 T A SRFBP1 Missense_Mutation p.S135T 0.30 tolerated(0.51) possibly_damaging(0.836) TCGA-CR-7371-01 5 140562680 140562680 C T PCDHB16 Silent p.I182I 0.27 TCGA-CR-7371-01 5 140563947 140563947 C A PCDHB16 Missense_Mutation p.Q605K 0.26 deleterious_low_confidence(0) benign(0.2) TCGA-CR-7371-01 5 140616044 140616044 C A PCDHB18 RNA 0.19 TCGA-CR-7371-01 5 140626992 140626992 G T PCDHB15 Missense_Mutation p.G616C 0.22 deleterious_low_confidence(0.01) benign(0.305) TCGA-CR-7371-01 5 141033762 141033762 C G ARAP3 Missense_Mutation p.E1464Q 0.21 tolerated_low_confidence(0.07) possibly_damaging(0.464) TCGA-CR-7371-01 5 141233941 141233941 A T PCDH1 Missense_Mutation p.F1127Y 0.23 tolerated(0.69) benign(0.004) TCGA-CR-7371-01 5 169484632 169484632 G C DOCK2 Missense_Mutation p.G1477R 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 5 180057697 180057697 G A FLT4 Silent p.G86G 0.22 TCGA-CR-7371-01 5 50092850 50092850 G A PARP8 Missense_Mutation p.R488H 0.28 tolerated(0.7) benign(0) TCGA-CR-7371-01 5 63256365 63256365 C A HTR1A Silent p.L394L 0.23 TCGA-CR-7371-01 5 63256923 63256923 C A HTR1A Silent p.L208L 0.23 TCGA-CR-7371-01 5 7717278 7717278 C A ADCY2 Nonsense_Mutation p.S544* 0.09 TCGA-CR-7371-01 5 79966002 79966002 C G MSH3 Missense_Mutation p.N222K 0.26 tolerated(0.16) benign(0.336) TCGA-CR-7371-01 5 93856022 93856022 C G KIAA0825 Missense_Mutation p.E301Q 0.32 deleterious(0.01) possibly_damaging(0.869) TCGA-CR-7371-01 6 130762242 130762242 C G TMEM200A Silent p.S225S 0.12 TCGA-CR-7371-01 6 130762243 130762243 G T TMEM200A Missense_Mutation p.V226L 0.10 tolerated(0.34) benign(0.007) TCGA-CR-7371-01 6 132891511 132891511 C A TAAR6 Missense_Mutation p.N17K 0.19 tolerated(0.08) benign(0.077) TCGA-CR-7371-01 6 132966284 132966284 C G TAAR1 Missense_Mutation p.D287H 0.16 deleterious(0.04) probably_damaging(0.948) TCGA-CR-7371-01 6 133802716 133802716 G T EYA4 Silent p.P362P 0.21 TCGA-CR-7371-01 6 152554980 152554980 C T SYNE1 Missense_Mutation p.R6883H 0.20 benign(0) TCGA-CR-7371-01 6 159420840 159420840 C G RSPH3 Missense_Mutation p.D57H 0.19 tolerated_low_confidence(0.15) benign(0.359) TCGA-CR-7371-01 6 26216847 26216847 G C HIST1H2BG Missense_Mutation p.P9A 0.16 tolerated_low_confidence(0.09) unknown(0) TCGA-CR-7371-01 6 27776257 27776257 C T HIST1H2AI Silent p.N90N 0.19 TCGA-CR-7371-01 6 27792087 27792087 T C HIST1H4J Missense_Mutation p.F62S 0.23 deleterious(0) probably_damaging(0.998) TCGA-CR-7371-01 6 27799116 27799116 C G HIST1H4K Missense_Mutation p.E64Q 0.15 deleterious(0) possibly_damaging(0.735) TCGA-CR-7371-01 6 32036752 32036752 C G TNXB Missense_Mutation p.D1917H 0.21 probably_damaging(0.999) TCGA-CR-7371-01 6 38834618 38834618 T - DNAH8 Frame_Shift_Del p.Y2004Tfs*18 0.26 TCGA-CR-7371-01 6 42146620 42146620 C T GUCA1A Silent p.D144D 0.28 TCGA-CR-7371-01 6 70040462 70040462 C T BAI3 Silent p.L1034L 0.18 TCGA-CR-7371-01 6 96651056 96651056 C G FUT9 Missense_Mutation p.L9V 0.18 tolerated(0.12) benign(0.043) TCGA-CR-7371-01 6 96651727 96651727 T C FUT9 Silent p.I232I 0.19 TCGA-CR-7371-01 7 100679091 100679091 C A MUC17 Missense_Mutation p.T1465K 0.21 unknown(0) TCGA-CR-7371-01 7 102665637 102665637 C A FBXL13 Missense_Mutation p.R123M 0.31 deleterious(0.01) benign(0.302) TCGA-CR-7371-01 7 103237037 103237037 C A RELN Missense_Mutation p.Q1135H 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-CR-7371-01 7 123516942 123516942 C T HYAL4 Silent p.N393N 0.14 TCGA-CR-7371-01 7 141951989 141951989 A G PRSS58 3'UTR 0.21 TCGA-CR-7371-01 7 141952173 141952173 C T PRSS58 Silent p.P198P 0.18 TCGA-CR-7371-01 7 142499028 142499028 G A TRBC2 Missense_Mutation p.G102E 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-7371-01 7 143826781 143826781 G C OR2A14 Missense_Mutation p.W192C 0.16 tolerated(0.1) benign(0.06) TCGA-CR-7371-01 7 149486333 149486333 C A SSPO RNA 0.16 TCGA-CR-7371-01 7 150036164 150036164 G C RARRES2 Missense_Mutation p.R96G 0.19 deleterious(0.02) probably_damaging(0.963) TCGA-CR-7371-01 7 38305125 38305125 G T TRGC1 Missense_Mutation p.N52K 0.10 tolerated(0.72) benign(0.003) TCGA-CR-7371-01 7 55221793 55221793 G A EGFR Silent p.V279V 0.09 TCGA-CR-7371-01 7 7412695 7412695 C G COL28A1 Missense_Mutation p.E948Q 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-CR-7371-01 7 91730347 91730347 G C AKAP9 Missense_Mutation p.D3692H 0.18 probably_damaging(0.91) TCGA-CR-7371-01 7 99124010 99124010 A G ZKSCAN5 Silent p.L449L 0.24 TCGA-CR-7371-01 8 100831006 100831006 G A VPS13B Silent p.E2862E 0.12 TCGA-CR-7371-01 8 100831079 100831079 G A VPS13B Missense_Mutation p.E2887K 0.16 deleterious(0.03) benign(0.292) TCGA-CR-7371-01 8 114449201 114449201 G C CSMD3 5'UTR 0.20 TCGA-CR-7371-01 8 121296005 121296005 G T COL14A1 Missense_Mutation p.V1319F 0.18 deleterious(0) benign(0.311) TCGA-CR-7371-01 8 139155262 139155262 G T FAM135B Silent p.R1211R 0.11 TCGA-CR-7371-01 8 139165260 139165260 C T FAM135B Silent p.V486V 0.13 TCGA-CR-7371-01 8 139614357 139614357 C A COL22A1 Splice_Site p.X1395_splice 0.22 TCGA-CR-7371-01 8 143425409 143425409 G T TSNARE1 Silent p.L221L 0.19 TCGA-CR-7371-01 8 143747266 143747266 G C JRK RNA 0.17 TCGA-CR-7371-01 8 144696589 144696589 C T TSTA3 Missense_Mutation p.A167T 0.10 tolerated(0.11) benign(0.014) TCGA-CR-7371-01 8 1876769 1876769 G C ARHGEF10 Silent p.V958V 0.09 TCGA-CR-7371-01 8 28196682 28196682 C T PNOC Silent p.L84L 0.16 TCGA-CR-7371-01 8 30695362 30695362 T A TEX15 Missense_Mutation p.E2430V 0.19 tolerated(0.11) benign(0.439) TCGA-CR-7371-01 8 3256980 3256980 C G CSMD1 Missense_Mutation p.D780H 0.19 probably_damaging(1) TCGA-CR-7371-01 8 41791507 41791507 C G KAT6A Missense_Mutation p.E1411Q 0.21 unknown(0) TCGA-CR-7371-01 8 41798738 41798738 G C KAT6A Silent p.L887L 0.18 TCGA-CR-7371-01 8 42024827 42024827 G A AP3M2 Missense_Mutation p.G317R 0.19 tolerated(0.34) benign(0.222) TCGA-CR-7371-01 8 42868217 42868217 A T HOOK3 Missense_Mutation p.K621N 0.17 deleterious(0) probably_damaging(0.998) TCGA-CR-7371-01 8 53073977 53073977 T A ST18 Missense_Mutation p.I518L 0.23 tolerated(0.28) benign(0.001) TCGA-CR-7371-01 8 55533682 55533682 G T RP1 Missense_Mutation p.R52S 0.19 deleterious(0) benign(0.094) TCGA-CR-7371-01 8 93074874 93074874 G C RUNX1T1 Intron 0.20 TCGA-CR-7371-01 9 107618116 107618116 C G ABCA1 Intron 0.23 TCGA-CR-7371-01 9 111903626 111903626 G A FRRS1L Nonsense_Mutation p.Q287* 0.12 TCGA-CR-7371-01 9 114676936 114676936 C T UGCG Silent p.L50L 0.20 TCGA-CR-7371-01 9 116155760 116155760 T C ALAD Missense_Mutation p.N27S 0.22 tolerated(0.36) benign(0) TCGA-CR-7371-01 9 126429310 126429310 C G DENND1A Missense_Mutation p.E168Q 0.13 deleterious(0) possibly_damaging(0.823) TCGA-CR-7371-01 9 130511596 130511596 C A SH2D3C Missense_Mutation p.V345F 0.17 tolerated(0.7) benign(0.179) TCGA-CR-7371-01 9 13168483 13168483 C A MPDZ Missense_Mutation p.G1046C 0.46 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 9 133993218 133993218 C G AIF1L Nonsense_Mutation p.S119* 0.10 TCGA-CR-7371-01 9 134308156 134308156 A T PRRC2B Nonsense_Mutation p.K90* 0.12 TCGA-CR-7371-01 9 137716625 137716625 A T COL5A1 Missense_Mutation p.K1626N 0.23 unknown(0) TCGA-CR-7371-01 9 139913671 139913671 C T ABCA2 Missense_Mutation p.E505K 0.15 deleterious(0.01) possibly_damaging(0.66) TCGA-CR-7371-01 9 21187567 21187567 G T IFNA4 5'UTR 0.61 TCGA-CR-7371-01 9 27950478 27950478 G A LINGO2 Silent p.L64L 0.43 TCGA-CR-7371-01 9 32631662 32631662 C T TAF1L Missense_Mutation p.V1306M 0.41 tolerated(0.09) benign(0.139) TCGA-CR-7371-01 9 32633519 32633519 G A TAF1L Missense_Mutation p.P687S 0.05 tolerated(0.15) benign(0.014) TCGA-CR-7371-01 9 35107755 35107755 C T FAM214B Missense_Mutation p.E173K 0.12 tolerated(0.06) benign(0.031) TCGA-CR-7371-01 9 35650548 35650548 A T SIT1 Missense_Mutation p.L63M 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7371-01 9 71002492 71002492 G C PGM5 Missense_Mutation p.A229P 0.11 deleterious(0) possibly_damaging(0.492) TCGA-CR-7371-01 9 72435949 72435949 T A C9orf135 Splice_Site p.X51_splice 0.19 TCGA-CR-7371-01 9 73167807 73167807 C T TRPM3 Missense_Mutation p.R1164Q 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7371-01 9 79320154 79320154 C A PRUNE2 Nonsense_Mutation p.E2346* 0.19 TCGA-CR-7371-01 9 84199390 84199390 C - TLE1 Frame_Shift_Del p.T727Pfs*28 0.11 TCGA-CR-7371-01 X 10106854 10106854 T A WWC3 Missense_Mutation p.C988S 0.16 tolerated(1) benign(0.002) TCGA-CR-7371-01 X 10176392 10176392 C G CLCN4 Missense_Mutation p.A384G 0.15 tolerated(0.06) benign(0.049) TCGA-CR-7371-01 X 103045553 103045553 A C PLP1 3'UTR 0.27 TCGA-CR-7371-01 X 104984567 104984567 G C IL1RAPL2 Missense_Mutation p.E311Q 0.16 tolerated(0.16) probably_damaging(0.988) TCGA-CR-7371-01 X 111097124 111097124 T A TRPC5 Missense_Mutation p.T371S 0.27 tolerated(0.88) benign(0.333) TCGA-CR-7371-01 X 112021692 112021692 C A AMOT 3'UTR 0.32 TCGA-CR-7371-01 X 112033890 112033890 G C AMOT Missense_Mutation p.Q683E 0.18 unknown(0) TCGA-CR-7371-01 X 123041078 123041078 G A XIAP 3'UTR 0.29 TCGA-CR-7371-01 X 12736348 12736348 G A FRMPD4 Missense_Mutation p.D1135N 0.11 deleterious_low_confidence(0.02) benign(0.009) TCGA-CR-7371-01 X 151820062 151820062 C G GABRQ Missense_Mutation p.I325M 0.28 deleterious(0) probably_damaging(0.933) TCGA-CR-7371-01 X 151900413 151900413 A T MAGEA12 Missense_Mutation p.F130I 0.28 tolerated(0.98) benign(0.003) TCGA-CR-7371-01 X 151909334 151909334 C G CSAG1 3'UTR 0.19 TCGA-CR-7371-01 X 25033720 25033720 T A ARX Silent p.G45G 0.17 TCGA-CR-7371-01 X 29686564 29686564 C T IL1RAPL1 Missense_Mutation p.P241S 0.13 deleterious(0.03) benign(0.115) TCGA-CR-7371-01 X 31496268 31496268 G C DMD Silent p.G2964G 0.12 TCGA-CR-7371-01 X 31496480 31496480 C G DMD Missense_Mutation p.E2894Q 0.16 possibly_damaging(0.607) TCGA-CR-7371-01 X 54823474 54823474 G A ITIH6 Missense_Mutation p.T53I 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7371-01 X 6069520 6069520 C G NLGN4X 5'UTR 0.15 TCGA-CR-7371-01 X 70146774 70146774 G A SLC7A3 Silent p.I468I 0.10 TCGA-CR-7371-01 X 73067568 73067568 T C XIST RNA 0.32 TCGA-CR-7371-01 X 73964112 73964112 C T KIAA2022 Missense_Mutation p.A94T 0.17 deleterious_low_confidence(0.04) benign(0.003) TCGA-CR-7371-01 X 91134302 91134302 C G PCDH11X Intron 0.16 TCGA-CR-7372-01 10 115962045 115962045 G A TDRD1 Silent p.E228E 0.32 TCGA-CR-7372-01 10 24834796 24834796 C T KIAA1217 Missense_Mutation p.P1792L 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-CR-7372-01 11 9445348 9445348 C A IPO7 Missense_Mutation p.P356T 0.21 deleterious(0.03) possibly_damaging(0.461) TCGA-CR-7372-01 12 11461743 11461743 T C PRB4 Silent p.Q58Q 0.22 TCGA-CR-7372-01 12 133215740 133215740 G A POLE Silent p.L1841L 0.24 TCGA-CR-7372-01 12 66786267 66786267 C A GRIP1 Missense_Mutation p.S710I 0.11 tolerated(0.19) benign(0.016) TCGA-CR-7372-01 13 101714441 101714441 C T NALCN Missense_Mutation p.R1545Q 0.22 deleterious(0) probably_damaging(0.97) TCGA-CR-7372-01 13 60384961 60384961 G A DIAPH3 Missense_Mutation p.R1042C 0.08 deleterious(0) probably_damaging(0.998) TCGA-CR-7372-01 14 76965245 76965245 G A ESRRB Intron 0.27 TCGA-CR-7372-01 15 43815758 43815758 G T MAP1A Missense_Mutation p.R696L 0.18 possibly_damaging(0.643) TCGA-CR-7372-01 15 45439652 45439652 G A DUOX1 Missense_Mutation p.D782N 0.16 deleterious(0.04) possibly_damaging(0.552) TCGA-CR-7372-01 15 54542506 54542506 G A UNC13C Silent p.T1104T 0.30 TCGA-CR-7372-01 15 89871966 89871966 G A POLG Nonsense_Mutation p.R374* 0.04 TCGA-CR-7372-01 16 5058627 5058627 G T SEC14L5 Missense_Mutation p.C593F 0.21 tolerated(0.08) probably_damaging(0.997) TCGA-CR-7372-01 16 58633241 58633241 T C CNOT1 Translation_Start_Site p.M1? 0.25 tolerated(0.06) probably_damaging(0.98) TCGA-CR-7372-01 16 71784153 71784153 A G AP1G1 Missense_Mutation p.V459A 0.10 tolerated(0.3) benign(0.251) TCGA-CR-7372-01 17 7579452 7579453 CT GGG TP53 Frame_Shift_Ins p.A79Pfs*70 0.39 TCGA-CR-7372-01 17 76526453 76526453 G A DNAH17 Missense_Mutation p.R1086W 0.27 possibly_damaging(0.659) TCGA-CR-7372-01 18 28651727 28651727 C T DSC2 Missense_Mutation p.G657S 0.36 deleterious(0.04) probably_damaging(1) TCGA-CR-7372-01 18 32443990 32443990 A G DTNA Silent p.L482L 0.47 TCGA-CR-7372-01 19 1784856 1784856 G A ATP8B3 Nonsense_Mutation p.R1208* 0.11 TCGA-CR-7372-01 19 35450296 35450296 G T ZNF792 Missense_Mutation p.P155T 0.40 tolerated(0.34) benign(0.018) TCGA-CR-7372-01 19 42793503 42793503 G A CIC Silent p.T435T 0.29 TCGA-CR-7372-01 19 44832521 44832521 G T ZNF112 Missense_Mutation p.H603N 0.18 deleterious(0) probably_damaging(1) TCGA-CR-7372-01 19 50549981 50549981 C T ZNF473 Nonsense_Mutation p.Q761* 0.13 TCGA-CR-7372-01 1 159827930 159827930 C T VSIG8 Missense_Mutation p.R127Q 0.15 tolerated(0.05) benign(0.099) TCGA-CR-7372-01 1 198723447 198723447 G T PTPRC Nonsense_Mutation p.E1187* 0.27 TCGA-CR-7372-01 1 223177009 223177009 C A DISP1 Nonsense_Mutation p.S757* 0.14 TCGA-CR-7372-01 1 236849948 236849948 G A ACTN2 5'UTR 0.30 TCGA-CR-7372-01 1 240939460 240939460 C T RGS7 3'UTR 0.20 TCGA-CR-7372-01 22 32498104 32498104 C A SLC5A1 Missense_Mutation p.S515R 0.10 tolerated(0.08) benign(0.239) TCGA-CR-7372-01 2 111399701 111399701 A C BUB1 Missense_Mutation p.L820V 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7372-01 2 141081499 141081499 T G LRP1B Missense_Mutation p.K4159N 0.36 benign(0.403) TCGA-CR-7372-01 2 241737138 241737138 C T KIF1A Missense_Mutation p.R11Q 0.27 deleterious(0) probably_damaging(1) TCGA-CR-7372-01 2 38976812 38976812 G A SRSF7 Missense_Mutation p.S82L 0.31 deleterious(0) possibly_damaging(0.849) TCGA-CR-7372-01 3 105260531 105260531 C T ALCAM Missense_Mutation p.R305C 0.12 deleterious(0) probably_damaging(0.998) TCGA-CR-7372-01 3 120469828 120469828 G T GTF2E1 Missense_Mutation p.Q143H 0.18 deleterious(0.03) possibly_damaging(0.447) TCGA-CR-7372-01 3 129284253 129284253 C T PLXND1 Missense_Mutation p.R1484Q 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7372-01 3 46728524 46728524 G A ALS2CL Silent p.H161H 0.40 TCGA-CR-7372-01 3 85775646 85775646 C A CADM2 Missense_Mutation p.F5L 0.16 tolerated(0.49) benign(0.01) TCGA-CR-7372-01 4 114469879 114469879 A G CAMK2D Silent p.C116C 0.26 TCGA-CR-7372-01 5 137548688 137548688 T A CDC23 Missense_Mutation p.I76F 0.13 tolerated(0.72) benign(0) TCGA-CR-7372-01 5 139494355 139494355 G T PURA Nonsense_Mutation p.E197* 0.13 TCGA-CR-7372-01 5 139494356 139494356 A T PURA Missense_Mutation p.E197V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CR-7372-01 6 114379098 114379098 C A HS3ST5 Nonsense_Mutation p.E122* 0.18 TCGA-CR-7372-01 6 26156805 26156807 AAG - HIST1H1E In_Frame_Del p.K64del 0.20 TCGA-CR-7372-01 6 74176036 74176037 - GT MTO1 Frame_Shift_Ins p.H110Yfs*6 0.19 TCGA-CR-7372-01 7 121691548 121691548 A T PTPRZ1 Nonsense_Mutation p.K2051* 0.31 TCGA-CR-7372-01 7 44737087 44737087 G A OGDH Missense_Mutation p.G724S 0.14 deleterious(0.01) benign(0.202) TCGA-CR-7372-01 7 5410483 5410483 G T TNRC18 Missense_Mutation p.Q1248K 0.27 benign(0.114) TCGA-CR-7372-01 7 5410484 5410484 C T TNRC18 Silent p.V1247V 0.27 TCGA-CR-7372-01 7 635848 635848 C T PRKAR1B Missense_Mutation p.V215M 0.22 deleterious(0) probably_damaging(0.995) TCGA-CR-7372-01 7 87913465 87913465 C A STEAP4 Missense_Mutation p.Q40H 0.13 tolerated(0.12) benign(0.247) TCGA-CR-7372-01 8 110477209 110477209 G T PKHD1L1 Silent p.L2716L 0.27 TCGA-CR-7372-01 8 140630972 140630972 C T KCNK9 Silent p.P218P 0.17 TCGA-CR-7372-01 8 77690483 77690483 T C ZFHX4 Missense_Mutation p.C1045R 0.12 possibly_damaging(0.588) TCGA-CR-7372-01 9 112200446 112200446 C T PTPN3 Missense_Mutation p.D179N 0.19 tolerated(1) possibly_damaging(0.448) TCGA-CR-7372-01 9 124751527 124751527 C T TTLL11 Missense_Mutation p.V496I 0.15 tolerated(0.14) benign(0.108) TCGA-CR-7373-01 10 106113661 106113661 T A CCDC147 Silent p.A2A 0.41 TCGA-CR-7373-01 10 123845099 123845099 G C TACC2 Missense_Mutation p.W1028C 0.22 benign(0.423) TCGA-CR-7373-01 10 126311927 126311927 C T FAM53B Missense_Mutation p.E385K 0.21 tolerated(0.38) benign(0.084) TCGA-CR-7373-01 10 30900884 30900884 T A LYZL2 Nonstop_Mutation p.*195Yext*42 0.34 TCGA-CR-7373-01 10 32800667 32800667 G A CCDC7 Intron 0.31 TCGA-CR-7373-01 10 37508040 37508040 G A ANKRD30A Missense_Mutation p.E1078K 0.35 tolerated(0.78) possibly_damaging(0.636) TCGA-CR-7373-01 10 75757900 75757900 C G VCL 5'UTR 0.33 TCGA-CR-7373-01 10 96818118 96818118 C G CYP2C8 Missense_Mutation p.D265H 0.06 deleterious(0) probably_damaging(0.999) TCGA-CR-7373-01 10 98770859 98770859 C T SLIT1 Missense_Mutation p.D1078N 0.12 tolerated(0.22) benign(0.16) TCGA-CR-7373-01 11 124750348 124750348 C T ROBO3 Silent p.F1331F 0.34 TCGA-CR-7373-01 11 1271273 1271273 C T MUC5B Missense_Mutation p.T4388M 0.30 benign(0.227) TCGA-CR-7373-01 11 128838895 128838895 C G ARHGAP32 Missense_Mutation p.Q2057H 0.19 tolerated_low_confidence(1) probably_damaging(0.993) TCGA-CR-7373-01 11 133792107 133792107 G C IGSF9B Silent p.L764L 0.15 TCGA-CR-7373-01 11 35308446 35308446 C G SLC1A2 Missense_Mutation p.D382H 0.24 deleterious(0) probably_damaging(1) TCGA-CR-7373-01 11 5566547 5566547 G C OR52H1 Missense_Mutation p.F69L 0.24 tolerated(0.86) benign(0.005) TCGA-CR-7373-01 11 59857261 59857261 G A MS4A2 Silent p.L51L 0.34 TCGA-CR-7373-01 11 6891450 6891450 C T OR10A2 Silent p.F155F 0.22 TCGA-CR-7373-01 11 71822259 71822259 G T ANAPC15 Silent p.R22R 0.34 TCGA-CR-7373-01 11 73388874 73388874 G A RAB6A 3'UTR 0.27 TCGA-CR-7373-01 11 85597249 85597249 G A CCDC83 Missense_Mutation p.R117H 0.27 tolerated(0.15) benign(0.187) TCGA-CR-7373-01 11 94134045 94134045 G C GPR83 Silent p.L123L 0.29 TCGA-CR-7373-01 12 120972767 120972767 G C RNF10 Missense_Mutation p.K51N 0.24 tolerated(0.13) benign(0.185) TCGA-CR-7373-01 12 122079382 122079382 G A ORAI1 Missense_Mutation p.G249S 0.31 deleterious(0.02) probably_damaging(0.967) TCGA-CR-7373-01 12 133295392 133295392 C G PGAM5 Intron 0.22 TCGA-CR-7373-01 12 13722780 13722780 C A GRIN2B Silent p.L781L 0.28 TCGA-CR-7373-01 12 4409145 4409145 C T CCND2 Silent p.T280T 0.09 TCGA-CR-7373-01 12 57920934 57920934 C - MBD6 Frame_Shift_Del p.P671Lfs*4 0.27 TCGA-CR-7373-01 12 6955001 6955001 G A CDCA3 3'Flank 0.39 TCGA-CR-7373-01 13 25285720 25285720 A G ATP12A 3'UTR 0.36 TCGA-CR-7373-01 13 77715011 77715011 G C MYCBP2 Silent p.V2419V 0.26 TCGA-CR-7373-01 14 20345329 20345329 G C OR4K2 Silent p.L301L 0.51 TCGA-CR-7373-01 14 36097115 36097115 C T RALGAPA1 Missense_Mutation p.R1507H 0.53 tolerated(0.07) probably_damaging(0.998) TCGA-CR-7373-01 15 42192864 42192864 C A EHD4 Missense_Mutation p.K535N 0.52 tolerated(0.11) probably_damaging(0.937) TCGA-CR-7373-01 15 84286874 84286874 C G SH3GL3 Silent p.L293L 0.29 TCGA-CR-7373-01 15 85669605 85669605 G A PDE8A Silent p.Q751Q 0.23 TCGA-CR-7373-01 15 86687068 86687068 G A AGBL1 Missense_Mutation p.G39D 0.30 deleterious(0) probably_damaging(0.952) TCGA-CR-7373-01 15 90143870 90143870 C T TICRR Nonsense_Mutation p.R703* 0.25 TCGA-CR-7373-01 15 91573318 91573318 A G AC068831.10 Intron 0.50 TCGA-CR-7373-01 16 28906160 28906160 G A ATP2A1 Silent p.E435E 0.27 TCGA-CR-7373-01 16 31073297 31073297 G A ZNF668 Missense_Mutation p.R341W 0.22 deleterious(0) probably_damaging(0.995) TCGA-CR-7373-01 16 335330 335330 G A PDIA2 Missense_Mutation p.A272T 0.21 tolerated(0.16) benign(0.037) TCGA-CR-7373-01 16 69007962 69007962 G C TANGO6 Missense_Mutation p.E911D 0.32 tolerated(0.3) benign(0.071) TCGA-CR-7373-01 16 745785 745785 C T FBXL16 Missense_Mutation p.D258N 0.40 deleterious(0.01) possibly_damaging(0.64) TCGA-CR-7373-01 16 75238201 75238201 A - CTRB2 Frame_Shift_Del p.L217Rfs*? 0.22 TCGA-CR-7373-01 17 17720296 17720297 - TT SREBF1 Frame_Shift_Ins p.Q618Sfs*111 0.26 TCGA-CR-7373-01 17 18144788 18144788 C T LLGL1 Silent p.S842S 0.26 TCGA-CR-7373-01 17 19809444 19809446 TAG - AKAP10 3'UTR 0.19 TCGA-CR-7373-01 17 27895763 27895763 C G TP53I13 5'UTR 0.21 TCGA-CR-7373-01 17 3475479 3475479 G A SHPK Missense_Mutation p.S723L 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-CR-7373-01 17 37576168 37576168 G C MED1 Missense_Mutation p.L367V 0.39 deleterious(0.01) probably_damaging(0.972) TCGA-CR-7373-01 17 38785063 38785063 T C SMARCE1 Missense_Mutation p.I404V 0.32 tolerated_low_confidence(1) unknown(0) TCGA-CR-7373-01 17 42635585 42635585 G A FZD2 Missense_Mutation p.G177R 0.32 tolerated(0.64) benign(0.01) TCGA-CR-7373-01 17 44248386 44248386 G C KANSL1 Nonsense_Mutation p.S375* 0.14 TCGA-CR-7373-01 17 4847869 4847869 C T RNF167 Silent p.V229V 0.18 TCGA-CR-7373-01 17 5048764 5048764 G A USP6 Missense_Mutation p.R686K 0.28 tolerated_low_confidence(1) benign(0.23) TCGA-CR-7373-01 17 54940147 54940147 G T DGKE Nonsense_Mutation p.E567* 0.37 TCGA-CR-7373-01 17 73751885 73751885 G A ITGB4 Silent p.E1554E 0.28 TCGA-CR-7373-01 17 7577139 7577139 G C TP53 Missense_Mutation p.R267G 0.57 deleterious(0) probably_damaging(0.994) TCGA-CR-7373-01 18 77710917 77710917 C G PQLC1 Missense_Mutation p.E4Q 0.33 tolerated_low_confidence(0.17) benign(0.017) TCGA-CR-7373-01 19 11132522 11132522 C T SMARCA4 Missense_Mutation p.P913L 0.20 probably_damaging(0.992) TCGA-CR-7373-01 19 15290215 15290215 G A NOTCH3 Silent p.L1140L 0.24 TCGA-CR-7373-01 19 33882214 33882214 C A PEPD Missense_Mutation p.G380V 0.21 deleterious(0) probably_damaging(0.999) TCGA-CR-7373-01 19 49507659 49507659 G C RUVBL2 Missense_Mutation p.K83N 0.17 deleterious(0) probably_damaging(0.983) TCGA-CR-7373-01 19 50098966 50098966 G T PRR12 Silent p.G458G 0.25 TCGA-CR-7373-01 19 50958903 50958903 T C MYBPC2 Splice_Site p.X780_splice 0.41 TCGA-CR-7373-01 19 5456154 5456154 G A ZNRF4 Missense_Mutation p.A218T 0.31 tolerated(0.33) benign(0.161) TCGA-CR-7373-01 1 112309065 112309065 C T DDX20 Silent p.Y673Y 0.24 TCGA-CR-7373-01 1 152276170 152276170 G A FLG Missense_Mutation p.T3731I 0.31 unknown(0) TCGA-CR-7373-01 1 152883939 152883939 C T IVL Nonsense_Mutation p.Q556* 0.26 TCGA-CR-7373-01 1 153533987 153533987 C T S100A2 Silent p.E74E 0.26 TCGA-CR-7373-01 1 153957221 153957221 C T RAB13 Missense_Mutation p.G54E 0.11 deleterious(0.01) possibly_damaging(0.862) TCGA-CR-7373-01 1 159505792 159505792 C G OR10J5 Missense_Mutation p.K2N 0.30 tolerated(0.23) benign(0.008) TCGA-CR-7373-01 1 160109482 160109482 C A ATP1A2 Missense_Mutation p.L965I 0.25 tolerated(0.1) probably_damaging(0.922) TCGA-CR-7373-01 1 165378880 165378880 C T RXRG Missense_Mutation p.V321M 0.30 deleterious(0.01) probably_damaging(0.951) TCGA-CR-7373-01 1 198685828 198685828 C G PTPRC Missense_Mutation p.L437V 0.17 tolerated(0.35) benign(0.012) TCGA-CR-7373-01 1 221913036 221913036 G A DUSP10 Silent p.P17P 0.30 TCGA-CR-7373-01 1 232941709 232941709 A G MAP10 Missense_Mutation p.T314A 0.39 deleterious(0.01) benign(0.013) TCGA-CR-7373-01 1 44415762 44415762 C T IPO13 Missense_Mutation p.S253L 0.31 deleterious(0.01) benign(0.108) TCGA-CR-7373-01 1 94342345 94342345 G A DNTTIP2 Silent p.P382P 0.44 TCGA-CR-7373-01 20 23966391 23966391 G A GGTLC1 Silent p.G148G 0.21 TCGA-CR-7373-01 20 35695460 35695460 A G RBL1 Silent p.D207D 0.26 TCGA-CR-7373-01 20 43837187 43837187 C A SEMG1 Missense_Mutation p.L417I 0.29 tolerated(0.32) benign(0.285) TCGA-CR-7373-01 20 57768086 57768087 TC A ZNF831 Frame_Shift_Del p.V671Dfs*34 0.16 TCGA-CR-7373-01 21 41710050 41710050 C G DSCAM Missense_Mutation p.Q587H 0.09 deleterious(0) probably_damaging(0.951) TCGA-CR-7373-01 22 21348988 21348988 C T LZTR1 Missense_Mutation p.A586V 0.08 tolerated(0.09) possibly_damaging(0.829) TCGA-CR-7373-01 2 132010645 132010645 C T POTEE Missense_Mutation p.P584L 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.713) TCGA-CR-7373-01 2 189953461 189953461 G C COL5A2 Missense_Mutation p.S202C 0.26 possibly_damaging(0.846) TCGA-CR-7373-01 2 231112687 231112687 G A SP140 Missense_Mutation p.E267K 0.53 tolerated(0.54) benign(0) TCGA-CR-7373-01 2 24261267 24261267 G C C2orf44 Missense_Mutation p.I366M 0.23 deleterious(0) probably_damaging(0.984) TCGA-CR-7373-01 2 24261335 24261335 G A C2orf44 Silent p.L344L 0.25 TCGA-CR-7373-01 2 24261747 24261747 G C C2orf44 Silent p.V206V 0.24 TCGA-CR-7373-01 2 26700042 26700042 C T OTOF Missense_Mutation p.E841K 0.14 deleterious(0) benign(0.231) TCGA-CR-7373-01 2 29443686 29443686 C G ALK Missense_Mutation p.Q1177H 0.30 deleterious(0.01) benign(0.09) TCGA-CR-7373-01 2 55812192 55812192 C T SMEK2 Missense_Mutation p.D410N 0.24 deleterious(0.05) possibly_damaging(0.71) TCGA-CR-7373-01 2 98408979 98408979 C T TMEM131 Silent p.A1338A 0.24 TCGA-CR-7373-01 3 121303817 121303817 G C ARGFX Missense_Mutation p.E92Q 0.19 deleterious(0.04) benign(0.298) TCGA-CR-7373-01 3 123383036 123383036 G A MYLK Missense_Mutation p.R1301C 0.23 tolerated(0.08) benign(0.005) TCGA-CR-7373-01 3 142523281 142523281 C T TRPC1 Missense_Mutation p.H655Y 0.36 deleterious(0) probably_damaging(0.985) TCGA-CR-7373-01 3 149192513 149192513 A G TM4SF4 5'UTR 0.25 TCGA-CR-7373-01 3 168834351 168834351 C A MECOM Nonsense_Mutation p.G314* 0.24 TCGA-CR-7373-01 3 169496734 169496734 G C MYNN Missense_Mutation p.D149H 0.37 deleterious(0.02) probably_damaging(0.976) TCGA-CR-7373-01 3 186395717 186395717 G C HRG 3'UTR 0.38 TCGA-CR-7373-01 3 40570902 40570902 G A ZNF621 Silent p.V39V 0.39 TCGA-CR-7373-01 3 50617880 50617880 C T HEMK1 3'UTR 0.22 TCGA-CR-7373-01 3 98240146 98240146 T G CLDND1 Missense_Mutation p.E64D 0.26 tolerated(0.18) possibly_damaging(0.697) TCGA-CR-7373-01 3 9989488 9989488 G A PRRT3 Missense_Mutation p.P457S 0.33 tolerated(0.1) probably_damaging(0.999) TCGA-CR-7373-01 4 1017651 1017651 C T FGFRL1 Silent p.I160I 0.32 TCGA-CR-7373-01 4 154557738 154557738 G C KIAA0922 3'UTR 0.45 TCGA-CR-7373-01 4 56230347 56230347 G C SRD5A3 Missense_Mutation p.M157I 0.18 tolerated(0.09) benign(0.001) TCGA-CR-7373-01 5 134007526 134007526 C G SEC24A Missense_Mutation p.S256C 0.30 deleterious(0.03) benign(0.285) TCGA-CR-7373-01 5 137911052 137911052 C T HSPA9 5'UTR 0.12 TCGA-CR-7373-01 5 140203521 140203521 C T PCDHA5 Missense_Mutation p.R721W 0.31 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-CR-7373-01 5 140735144 140735144 T C PCDHGA4 Missense_Mutation p.V126A 0.33 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-CR-7373-01 5 149754239 149754239 C A TCOF1 Silent p.S381S 0.23 TCGA-CR-7373-01 5 71491499 71491499 G A MAP1B Missense_Mutation p.A773T 0.22 unknown(0) TCGA-CR-7373-01 5 82808041 82808041 G A VCAN Missense_Mutation p.G290S 0.38 deleterious(0) probably_damaging(1) TCGA-CR-7373-01 6 119501047 119501047 G A MAN1A1 Silent p.S633S 0.22 TCGA-CR-7373-01 6 126203622 126203622 G A NCOA7 Silent p.S208S 0.14 TCGA-CR-7373-01 6 126210917 126210917 G A NCOA7 Missense_Mutation p.E573K 0.23 tolerated(0.1) benign(0.005) TCGA-CR-7373-01 6 152706952 152706952 C T SYNE1 Missense_Mutation p.E2837K 0.19 benign(0.184) TCGA-CR-7373-01 6 163876442 163876442 G C QKI Missense_Mutation p.E92Q 0.30 deleterious(0) probably_damaging(0.967) TCGA-CR-7373-01 6 2675332 2675332 G C MYLK4 Silent p.L356L 0.28 TCGA-CR-7373-01 6 27420303 27420303 C G ZNF184 Missense_Mutation p.Q345H 0.16 tolerated(0.21) benign(0.233) TCGA-CR-7373-01 6 29910349 29910349 C T HLA-A Nonsense_Mutation p.R7* 0.20 TCGA-CR-7373-01 6 33219368 33219368 G A VPS52 Missense_Mutation p.S651L 0.29 deleterious(0.04) benign(0.022) TCGA-CR-7373-01 6 40359913 40359913 C T LRFN2 Silent p.P713P 0.26 TCGA-CR-7373-01 6 41318601 41318601 G A NCR2 Silent p.%3D 0.26 TCGA-CR-7373-01 7 123346798 123346798 C T WASL Missense_Mutation p.G112E 0.30 deleterious(0) unknown(0) TCGA-CR-7373-01 7 134849458 134849458 G A TMEM140 Missense_Mutation p.G89R 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7373-01 7 14378224 14378224 G A DGKB Nonsense_Mutation p.R681* 0.31 TCGA-CR-7373-01 7 44805631 44805631 C T ZMIZ2 Intron 0.21 TCGA-CR-7373-01 7 86468769 86468769 G A GRM3 Missense_Mutation p.G647R 0.28 deleterious(0.03) probably_damaging(0.995) TCGA-CR-7373-01 7 99084583 99084583 T G ZNF789 Missense_Mutation p.C250W 0.27 deleterious(0) probably_damaging(0.982) TCGA-CR-7373-01 8 120818639 120818639 C T TAF2 Missense_Mutation p.R101K 0.20 tolerated(0.26) possibly_damaging(0.585) TCGA-CR-7373-01 8 144557590 144557590 G T ZC3H3 Silent p.G627G 0.25 TCGA-CR-7373-01 9 123731393 123731393 G C C5 Missense_Mutation p.S1389C 0.12 deleterious(0.01) possibly_damaging(0.765) TCGA-CR-7373-01 9 124751422 124751422 T A TTLL11 Intron 0.21 TCGA-CR-7373-01 9 130257620 130257620 G A LRSAM1 Missense_Mutation p.E541K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7373-01 9 130630646 130630646 G A AK1 Missense_Mutation p.T157I 0.34 tolerated(0.06) probably_damaging(1) TCGA-CR-7373-01 9 134321939 134321939 C T PRRC2B Silent p.L255L 0.09 TCGA-CR-7373-01 9 139617956 139617956 C T FAM69B Silent p.Y342Y 0.38 TCGA-CR-7373-01 9 33917126 33917126 C G UBE2R2 Nonsense_Mutation p.S203* 0.11 TCGA-CR-7373-01 9 34623560 34623560 G A ARID3C Missense_Mutation p.R243W 0.14 deleterious(0.02) benign(0.004) TCGA-CR-7373-01 9 35715166 35715166 C T TLN1 Missense_Mutation p.D882N 0.10 tolerated(0.82) probably_damaging(0.989) TCGA-CR-7373-01 9 72471558 72471558 G A C9orf135 Missense_Mutation p.E117K 0.10 tolerated(0.4) benign(0.295) TCGA-CR-7373-01 9 95043130 95043130 C G IARS Missense_Mutation p.D215H 0.07 deleterious(0.01) benign(0.183) TCGA-CR-7373-01 X 151900864 151900864 T A MAGEA12 5'UTR 0.57 TCGA-CR-7373-01 X 48123288 48123288 C T SSX1 Silent p.N134N 0.57 TCGA-CR-7374-01 10 15120601 15120601 C A ACBD7 Silent p.G65G 0.34 TCGA-CR-7374-01 10 18292013 18292013 C T SLC39A12 Intron 0.36 TCGA-CR-7374-01 10 24884718 24884718 G A ARHGAP21 Nonsense_Mutation p.R1214* 0.34 TCGA-CR-7374-01 10 27434503 27434503 C T YME1L1 Missense_Mutation p.R119K 0.20 tolerated(0.41) benign(0.004) TCGA-CR-7374-01 10 37438733 37438733 C A ANKRD30A Missense_Mutation p.P478Q 0.32 tolerated(0.05) benign(0.267) TCGA-CR-7374-01 10 49414961 49414961 G T FRMPD2 Missense_Mutation p.P543T 0.32 deleterious(0.01) probably_damaging(0.957) TCGA-CR-7374-01 10 55782945 55782945 C T PCDH15 Missense_Mutation p.D745N 0.13 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 10 62648067 62648067 C A RHOBTB1 Missense_Mutation p.M453I 0.23 deleterious(0.03) benign(0.11) TCGA-CR-7374-01 10 74673213 74673213 G T OIT3 Missense_Mutation p.G313V 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 10 75139821 75139821 G A ANXA7 Nonsense_Mutation p.Q375* 0.23 TCGA-CR-7374-01 10 75277422 75277422 G C USP54 Missense_Mutation p.S921C 0.16 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-CR-7374-01 10 8100437 8100437 G A GATA3 Silent p.S137S 0.31 TCGA-CR-7374-01 10 89624270 89624270 G C PTEN Missense_Mutation p.R15T 0.10 deleterious(0) possibly_damaging(0.821) TCGA-CR-7374-01 11 103027117 103027117 G C DYNC2H1 Missense_Mutation p.D1249H 0.37 benign(0.012) TCGA-CR-7374-01 11 108043717 108043717 G A NPAT Missense_Mutation p.S665F 0.06 deleterious(0.02) benign(0.089) TCGA-CR-7374-01 11 119144609 119144609 G C CBL Missense_Mutation p.A208P 0.31 deleterious(0.04) possibly_damaging(0.882) TCGA-CR-7374-01 11 120925915 120925915 A T TBCEL Missense_Mutation p.T204S 0.39 tolerated(0.61) benign(0.073) TCGA-CR-7374-01 11 121476228 121476228 C G SORL1 Silent p.L1632L 0.07 TCGA-CR-7374-01 11 17409546 17409546 C T KCNJ11 Silent p.R31R 0.08 TCGA-CR-7374-01 11 17427052 17427052 T C ABCC8 Missense_Mutation p.T1130A 0.22 tolerated(0.13) benign(0.044) TCGA-CR-7374-01 11 18636297 18636298 - T SPTY2D1 Frame_Shift_Ins p.N508Kfs*18 0.25 TCGA-CR-7374-01 11 19077336 19077336 A T MRGPRX2 Missense_Mutation p.L205Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-CR-7374-01 11 21592462 21592462 T A NELL1 Missense_Mutation p.H711Q 0.27 tolerated(0.32) benign(0.004) TCGA-CR-7374-01 11 22848863 22848863 C A SVIP Missense_Mutation p.A37S 0.21 tolerated(0.6) probably_damaging(0.99) TCGA-CR-7374-01 11 26681844 26681844 C T ANO3 Silent p.Y933Y 0.23 TCGA-CR-7374-01 11 26742938 26742938 G A SLC5A12 Silent p.I108I 0.33 TCGA-CR-7374-01 11 35222735 35222735 G A CD44 Silent p.R343R 0.22 TCGA-CR-7374-01 11 433389 433389 G C ANO9 Missense_Mutation p.T92S 0.53 tolerated(0.4) benign(0.298) TCGA-CR-7374-01 11 47371331 47371331 G T MYBPC3 Silent p.A216A 0.35 TCGA-CR-7374-01 11 4870420 4870420 G T OR51S1 Missense_Mutation p.Q7K 0.28 tolerated(0.24) benign(0.001) TCGA-CR-7374-01 11 5142452 5142452 C A OR52A4 RNA 0.16 TCGA-CR-7374-01 11 534351 534351 C T HRAS 5'UTR 0.55 TCGA-CR-7374-01 11 55595390 55595390 G T OR5L2 Missense_Mutation p.E232D 0.31 tolerated(0.05) possibly_damaging(0.876) TCGA-CR-7374-01 11 55872670 55872670 G T OR8H2 Missense_Mutation p.R51L 0.23 tolerated(0.26) benign(0.009) TCGA-CR-7374-01 11 55872803 55872803 G T OR8H2 Silent p.T95T 0.25 TCGA-CR-7374-01 11 55890000 55890000 G T OR8H3 Missense_Mutation p.R51L 0.08 tolerated(0.1) benign(0.011) TCGA-CR-7374-01 11 55927286 55927286 C A OR8K5 Missense_Mutation p.G170C 0.36 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CR-7374-01 11 56230512 56230512 C A OR5M9 Missense_Mutation p.M122I 0.30 deleterious(0.04) benign(0.008) TCGA-CR-7374-01 11 60183849 60183849 G C MS4A14 Missense_Mutation p.E503Q 0.07 deleterious(0.03) benign(0.257) TCGA-CR-7374-01 11 61179315 61179320 GATGAG - CPSF7 In_Frame_Del p.L435_I436del 0.31 TCGA-CR-7374-01 11 65651106 65651106 C G CTSW 3'UTR 0.19 TCGA-CR-7374-01 11 65651446 65651446 C T FIBP Silent p.%3D 0.12 TCGA-CR-7374-01 11 67378581 67378581 C T NDUFV1 Silent p.G272G 0.27 TCGA-CR-7374-01 11 722549 722549 G A EPS8L2 Missense_Mutation p.R403H 0.48 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 11 76063227 76063227 C A PRKRIR Nonsense_Mutation p.E323* 0.29 TCGA-CR-7374-01 11 82879779 82879779 G C PCF11 Missense_Mutation p.G801A 0.07 tolerated(0.42) benign(0.004) TCGA-CR-7374-01 11 85436305 85436305 C T SYTL2 Missense_Mutation p.V399I 0.30 deleterious(0.01) benign(0.031) TCGA-CR-7374-01 11 86152375 86152378 AAAG - ME3 Frame_Shift_Del p.F587Hfs*12 0.29 TCGA-CR-7374-01 11 89531367 89531367 T C TRIM49 Silent p.L430L 0.15 TCGA-CR-7374-01 11 9161320 9161320 G C DENND5A Missense_Mutation p.I1254M 0.09 tolerated(0.08) benign(0.016) TCGA-CR-7374-01 12 100934551 100934551 C - NR1H4 Frame_Shift_Del p.P355Rfs*22 0.20 TCGA-CR-7374-01 12 101750774 101750774 C G UTP20 Missense_Mutation p.L1869V 0.37 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 12 107109319 107109319 C T RFX4 Nonsense_Mutation p.Q388* 0.33 TCGA-CR-7374-01 12 109893929 109893929 C A KCTD10 Missense_Mutation p.Q239H 0.29 tolerated(0.36) probably_damaging(0.961) TCGA-CR-7374-01 12 112711557 112711557 G C HECTD4 Nonsense_Mutation p.S471* 0.05 TCGA-CR-7374-01 12 123651318 123651318 G A MPHOSPH9 Silent p.D673D 0.33 TCGA-CR-7374-01 12 124408924 124408924 A G DNAH10 Missense_Mutation p.D3786G 0.26 benign(0.02) TCGA-CR-7374-01 12 125397588 125397588 C G UBC Missense_Mutation p.E244Q 0.06 tolerated(0.06) benign(0.344) TCGA-CR-7374-01 12 14976373 14976373 C T C12orf60 Silent p.T168T 0.07 TCGA-CR-7374-01 12 15035014 15035014 G T MGP 3'UTR 0.33 TCGA-CR-7374-01 12 46765160 46765160 G C SLC38A2 Intron 0.25 TCGA-CR-7374-01 12 56396425 56396425 C G SUOX Missense_Mutation p.S50C 0.16 deleterious_low_confidence(0.05) benign(0.01) TCGA-CR-7374-01 12 57883081 57883081 G A MARS Missense_Mutation p.D78N 0.07 tolerated(0.55) benign(0.001) TCGA-CR-7374-01 12 69109407 69109407 G T NUP107 Missense_Mutation p.D324Y 0.30 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 12 72278770 72278770 G T TBC1D15 Nonsense_Mutation p.E175* 0.15 TCGA-CR-7374-01 12 78444768 78444768 G A NAV3 Missense_Mutation p.R786H 0.29 deleterious(0) probably_damaging(0.92) TCGA-CR-7374-01 12 94806149 94806149 A T CCDC41 Missense_Mutation p.L40I 0.22 tolerated(0.2) benign(0.017) TCGA-CR-7374-01 13 100807338 100807338 G T PCCA Missense_Mutation p.A136S 0.67 deleterious(0.02) benign(0.295) TCGA-CR-7374-01 13 25263504 25263504 G C ATP12A Missense_Mutation p.M179I 0.14 deleterious(0) probably_damaging(0.996) TCGA-CR-7374-01 13 29599738 29599738 A T MTUS2 Missense_Mutation p.L311F 0.42 deleterious(0.01) possibly_damaging(0.682) TCGA-CR-7374-01 13 33016826 33016826 C T N4BP2L2 Silent p.L616L 0.44 TCGA-CR-7374-01 13 33281144 33281144 C G PDS5B Missense_Mutation p.Q644E 0.14 tolerated(1) benign(0.001) TCGA-CR-7374-01 13 48955580 48955580 G A RB1 Splice_Site p.X565_splice 0.45 TCGA-CR-7374-01 13 49281892 49281892 G T CYSLTR2 Missense_Mutation p.K313N 0.51 deleterious(0.03) probably_damaging(0.995) TCGA-CR-7374-01 13 49281893 49281893 G T CYSLTR2 Missense_Mutation p.D314Y 0.52 deleterious(0.03) possibly_damaging(0.789) TCGA-CR-7374-01 13 52593200 52593200 G A ALG11 Missense_Mutation p.A66T 0.50 deleterious(0.01) probably_damaging(0.954) TCGA-CR-7374-01 14 103188673 103188673 G C RCOR1 Missense_Mutation p.E447Q 0.07 tolerated(0.41) benign(0.346) TCGA-CR-7374-01 14 104025981 104025981 G A BAG5 3'UTR 0.70 TCGA-CR-7374-01 14 19553818 19553818 C G POTEG Missense_Mutation p.H134Q 0.05 deleterious(0.05) benign(0.051) TCGA-CR-7374-01 14 22356034 22356034 G A TRAV12-2 5'Flank 0.31 TCGA-CR-7374-01 14 29237608 29237608 G T FOXG1 Missense_Mutation p.A375S 0.30 tolerated(0.19) benign(0.392) TCGA-CR-7374-01 14 45669225 45669225 G A FANCM 3'UTR 0.13 TCGA-CR-7374-01 14 58060786 58060786 G A SLC35F4 Missense_Mutation p.H90Y 0.40 tolerated_low_confidence(0.17) benign(0.002) TCGA-CR-7374-01 14 62550913 62550913 G A SYT16 Splice_Site p.X479_splice 0.22 TCGA-CR-7374-01 14 64954378 64954378 G A ZBTB25 Nonsense_Mutation p.Q191* 0.33 TCGA-CR-7374-01 14 68029252 68029252 A T PLEKHH1 Missense_Mutation p.R302W 0.23 deleterious_low_confidence(0) possibly_damaging(0.566) TCGA-CR-7374-01 14 69919976 69919976 C G SLC39A9 Missense_Mutation p.S141C 0.03 tolerated(0.05) benign(0.4) TCGA-CR-7374-01 14 70238141 70238141 C - SRSF5 Frame_Shift_Del p.R262Dfs*14 0.18 TCGA-CR-7374-01 14 75230189 75230189 C A YLPM1 5'UTR 0.16 TCGA-CR-7374-01 14 86088200 86088200 C T FLRT2 Silent p.L114L 0.31 TCGA-CR-7374-01 14 88983571 88983571 T G PTPN21 Missense_Mutation p.Q72P 0.30 deleterious(0.03) possibly_damaging(0.873) TCGA-CR-7374-01 14 92560173 92560173 A - ATXN3 Frame_Shift_Del p.I80* 0.24 TCGA-CR-7374-01 14 92625450 92625450 G T CPSF2 Nonsense_Mutation p.E649* 0.33 TCGA-CR-7374-01 14 93754978 93754978 C T BTBD7 Intron 0.20 TCGA-CR-7374-01 15 20645746 20645746 G A HERC2P3 RNA 0.17 TCGA-CR-7374-01 15 20666500 20666500 G T HERC2P3 RNA 0.22 TCGA-CR-7374-01 15 22332526 22332526 C A RP11-69H14.6 RNA 0.10 TCGA-CR-7374-01 15 35045073 35045073 C A GJD2 Missense_Mutation p.R191M 0.39 tolerated(0.06) possibly_damaging(0.784) TCGA-CR-7374-01 15 40462766 40462766 C T BUB1B Missense_Mutation p.P90S 0.08 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 15 42632035 42632035 G T GANC Missense_Mutation p.R671I 0.35 possibly_damaging(0.821) TCGA-CR-7374-01 15 48577394 48577394 C T SLC12A1 Silent p.G859G 0.33 TCGA-CR-7374-01 15 48730063 48730063 G A FBN1 Missense_Mutation p.S2072L 0.07 benign(0.006) TCGA-CR-7374-01 15 50773685 50773685 G T USP8 Missense_Mutation p.R409L 0.38 deleterious(0) probably_damaging(0.968) TCGA-CR-7374-01 15 50902065 50902065 G A TRPM7 Missense_Mutation p.H792Y 0.29 tolerated(0.13) benign(0.007) TCGA-CR-7374-01 15 55929374 55929374 G T PRTG Missense_Mutation p.R873S 0.32 deleterious(0.04) possibly_damaging(0.887) TCGA-CR-7374-01 15 59146757 59146757 G C FAM63B Missense_Mutation p.R605P 0.15 deleterious(0.02) probably_damaging(0.969) TCGA-CR-7374-01 15 59934436 59934436 C A GTF2A2 Missense_Mutation p.C68F 0.25 deleterious(0) probably_damaging(0.987) TCGA-CR-7374-01 15 64658146 64658146 G C KIAA0101 3'UTR 0.21 TCGA-CR-7374-01 15 66777514 66777514 G A MAP2K1 Missense_Mutation p.G294R 0.19 tolerated(0.1) benign(0.167) TCGA-CR-7374-01 15 79292109 79292109 G T RASGRF1 Silent p.R924R 0.23 TCGA-CR-7374-01 15 82523196 82523196 C A EFTUD1 Missense_Mutation p.G283V 0.05 tolerated(0.19) benign(0.032) TCGA-CR-7374-01 15 89015921 89015921 G A MRPS11 Silent p.E82E 0.06 TCGA-CR-7374-01 15 89453073 89453073 G A MFGE8 Missense_Mutation p.S52L 0.13 deleterious(0.05) benign(0.065) TCGA-CR-7374-01 15 89837176 89837176 G A FANCI Missense_Mutation p.D802N 0.16 tolerated(0.36) benign(0.009) TCGA-CR-7374-01 15 91436009 91436009 G C FES Missense_Mutation p.E594Q 0.06 deleterious(0.01) probably_damaging(0.97) TCGA-CR-7374-01 15 94928705 94928705 G T MCTP2 Missense_Mutation p.G580V 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-CR-7374-01 15 97326848 97326848 G T SPATA8 5'UTR 0.47 TCGA-CR-7374-01 16 20476886 20476886 G A ACSM2A Silent p.K75K 0.08 TCGA-CR-7374-01 16 20570722 20570722 C T ACSM2B Silent p.K75K 0.33 TCGA-CR-7374-01 16 21215680 21215680 T C ZP2 Missense_Mutation p.I247V 0.41 tolerated(0.33) benign(0.001) TCGA-CR-7374-01 16 216015 216015 C A HBM Missense_Mutation p.R7S 0.29 deleterious(0) benign(0.271) TCGA-CR-7374-01 16 30456514 30456514 C A SEPHS2 Missense_Mutation p.V179F 0.45 probably_damaging(0.992) TCGA-CR-7374-01 16 30779633 30779633 G A RNF40 Silent p.E587E 0.34 TCGA-CR-7374-01 16 32890588 32890588 T A SLC6A10P RNA 0.19 TCGA-CR-7374-01 16 56678640 56678640 C A MT1A 3'Flank 0.31 TCGA-CR-7374-01 16 58043902 58043902 G A USB1 Missense_Mutation p.R112Q 0.03 tolerated(0.4) benign(0.015) TCGA-CR-7374-01 16 66881111 66881111 T C CA7 Silent p.N73N 0.31 TCGA-CR-7374-01 16 67694944 67694944 G C PARD6A Translation_Start_Site p.M1? 0.33 deleterious(0.03) benign(0.218) TCGA-CR-7374-01 16 68337973 68337973 C G SLC7A6OS Missense_Mutation p.E212Q 0.06 tolerated(0.98) benign(0.223) TCGA-CR-7374-01 16 68729192 68729192 G A CDH3 Silent p.K679K 0.12 TCGA-CR-7374-01 16 84485542 84485542 C G ATP2C2 Missense_Mutation p.S559C 0.07 tolerated(0.09) probably_damaging(0.972) TCGA-CR-7374-01 16 89371734 89371734 G C ANKRD11 Missense_Mutation p.L36V 0.06 possibly_damaging(0.899) TCGA-CR-7374-01 17 10353772 10353772 G T MYH4 Silent p.A1393A 0.32 TCGA-CR-7374-01 17 1703541 1703541 C T SMYD4 Missense_Mutation p.E383K 0.08 tolerated(0.16) benign(0.097) TCGA-CR-7374-01 17 1747221 1747221 G A RPA1 Missense_Mutation p.R31H 0.64 deleterious(0) probably_damaging(0.987) TCGA-CR-7374-01 17 177361 177361 G A RPH3AL 5'UTR 0.31 TCGA-CR-7374-01 17 18070960 18070960 C T MYO15A Silent p.S3335S 0.32 TCGA-CR-7374-01 17 21731304 21731304 G A UBBP4 Intron 0.35 TCGA-CR-7374-01 17 2323539 2323539 C A METTL16 Nonsense_Mutation p.G472* 0.25 TCGA-CR-7374-01 17 26898064 26898064 C T PIGS Intron 0.15 TCGA-CR-7374-01 17 29528502 29528502 A T NF1 Missense_Mutation p.N420I 0.62 deleterious(0.01) probably_damaging(0.991) TCGA-CR-7374-01 17 29631403 29631403 C T EVI2B Missense_Mutation p.D409N 0.30 deleterious(0.03) possibly_damaging(0.908) TCGA-CR-7374-01 17 34863652 34863652 C G MYO19 Missense_Mutation p.R448T 0.32 deleterious(0) possibly_damaging(0.688) TCGA-CR-7374-01 17 38858167 38858167 C G KRT24 Missense_Mutation p.E212Q 0.07 tolerated(0.5) probably_damaging(0.928) TCGA-CR-7374-01 17 38859533 38859533 C G KRT24 Missense_Mutation p.G138A 0.07 deleterious(0) unknown(0) TCGA-CR-7374-01 17 38906696 38906696 C G KRT25 Missense_Mutation p.D371H 0.21 deleterious(0.01) benign(0.119) TCGA-CR-7374-01 17 38906822 38906822 C A KRT25 Nonsense_Mutation p.E329* 0.17 TCGA-CR-7374-01 17 4883457 4883457 C A CAMTA2 Missense_Mutation p.G410V 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-7374-01 17 58073303 58073303 T A RP11-178C3.2 RNA 0.31 TCGA-CR-7374-01 17 59760576 59760576 C G BRIP1 3'UTR 0.15 TCGA-CR-7374-01 17 67197788 67197788 G A ABCA10 Missense_Mutation p.S343F 0.20 deleterious(0) possibly_damaging(0.888) TCGA-CR-7374-01 17 74729274 74729274 C G METTL23 Missense_Mutation p.S100C 0.06 deleterious(0) probably_damaging(0.979) TCGA-CR-7374-01 17 7578469 7578469 C - TP53 Frame_Shift_Del p.G154Afs*16 0.41 TCGA-CR-7374-01 17 78327389 78327389 G C RNF213 Missense_Mutation p.E3501Q 0.07 benign(0.017) TCGA-CR-7374-01 17 78388916 78388916 C G ENDOV 5'Flank 0.12 TCGA-CR-7374-01 18 14542977 14542977 G A POTEC Missense_Mutation p.L57F 0.14 tolerated_low_confidence(0.06) benign(0) TCGA-CR-7374-01 18 31325388 31325388 G T ASXL3 Missense_Mutation p.C1859F 0.03 possibly_damaging(0.729) TCGA-CR-7374-01 18 33750144 33750144 T G ELP2 Missense_Mutation p.L797R 0.34 deleterious(0.02) possibly_damaging(0.757) TCGA-CR-7374-01 18 40613778 40613778 A G RIT2 Missense_Mutation p.I53T 0.53 deleterious(0) probably_damaging(0.983) TCGA-CR-7374-01 18 43310367 43310367 A G SLC14A1 Missense_Mutation p.R84G 0.05 tolerated(0.52) benign(0.002) TCGA-CR-7374-01 18 8783661 8783661 A C SOGA2 Missense_Mutation p.Y184S 0.06 deleterious(0.03) probably_damaging(1) TCGA-CR-7374-01 19 13067806 13067806 G A GADD45GIP1 Missense_Mutation p.S74L 0.38 tolerated(0.33) benign(0.027) TCGA-CR-7374-01 19 14090331 14090331 T A RFX1 Silent p.P254P 0.24 TCGA-CR-7374-01 19 19822966 19822966 G A ZNF14 Missense_Mutation p.S375F 0.12 tolerated(0.71) probably_damaging(0.988) TCGA-CR-7374-01 19 2109958 2109958 C G AP3D1 Splice_Site p.X1089_splice 0.24 TCGA-CR-7374-01 19 23415077 23415077 C T ZNF724P Missense_Mutation p.D8N 0.25 deleterious(0) probably_damaging(0.945) TCGA-CR-7374-01 19 23869962 23869962 C A ZNF675 5'UTR 0.36 TCGA-CR-7374-01 19 23869963 23869963 C A ZNF675 5'UTR 0.37 TCGA-CR-7374-01 19 35800952 35800952 G T MAG Silent p.V469V 0.48 TCGA-CR-7374-01 19 36362534 36362534 C T APLP1 Silent p.L186L 0.20 TCGA-CR-7374-01 19 42597981 42597981 C G POU2F2 Missense_Mutation p.V400L 0.06 tolerated(0.07) possibly_damaging(0.891) TCGA-CR-7374-01 19 42795409 42795409 C A CIC Missense_Mutation p.P830H 0.44 probably_damaging(0.99) TCGA-CR-7374-01 19 44376785 44376785 T C ZNF404 Silent p.E527E 0.53 TCGA-CR-7374-01 19 51563831 51563831 C A KLK13 Missense_Mutation p.S33I 0.45 deleterious(0.01) benign(0.276) TCGA-CR-7374-01 19 52497539 52497539 C T ZNF615 Missense_Mutation p.E275K 0.09 tolerated(0.06) benign(0.001) TCGA-CR-7374-01 19 52659425 52659425 C A ZNF836 Missense_Mutation p.G504V 0.51 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 19 52659426 52659426 C A ZNF836 Missense_Mutation p.G504C 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7374-01 19 54318203 54318203 G C NLRP12 Nonsense_Mutation p.S110* 0.11 TCGA-CR-7374-01 19 55106848 55106848 C A LILRA1 Silent p.L214L 0.06 TCGA-CR-7374-01 19 6190690 6190690 C G ACSBG2 3'UTR 0.20 TCGA-CR-7374-01 19 6924814 6924814 G T EMR1 Silent p.L639L 0.24 TCGA-CR-7374-01 19 7697683 7697683 G A PCP2 Silent p.L29L 0.56 TCGA-CR-7374-01 19 7965435 7965435 A T LRRC8E Silent p.S676S 0.35 TCGA-CR-7374-01 19 9003657 9003657 T G MUC16 Missense_Mutation p.N13328T 0.08 probably_damaging(1) TCGA-CR-7374-01 19 9069584 9069584 A T MUC16 Silent p.A5954A 0.33 TCGA-CR-7374-01 1 10713622 10713622 G C CASZ1 Nonsense_Mutation p.S831* 0.17 TCGA-CR-7374-01 1 109538250 109538250 G C WDR47 Nonsense_Mutation p.S556* 0.13 TCGA-CR-7374-01 1 111772349 111772349 G T CHI3L2 Intron 0.46 TCGA-CR-7374-01 1 114397643 114397643 T C PTPN22 Missense_Mutation p.Y190C 0.46 deleterious(0) probably_damaging(0.994) TCGA-CR-7374-01 1 12885142 12885142 T A PRAMEF11 Silent p.I323I 0.28 TCGA-CR-7374-01 1 13475124 13475124 G A PRAMEF18 Silent p.I335I 0.42 TCGA-CR-7374-01 1 13718882 13718882 A G PRAMEF17 Missense_Mutation p.R449G 0.52 tolerated(0.34) probably_damaging(0.984) TCGA-CR-7374-01 1 13940214 13940214 G C PDPN Missense_Mutation p.E198Q 0.44 deleterious(0.03) benign(0.017) TCGA-CR-7374-01 1 149783712 149783712 G T HIST2H2BF Nonsense_Mutation p.S56* 0.29 TCGA-CR-7374-01 1 149859080 149859080 G T HIST2H2AB Missense_Mutation p.N129K 0.43 tolerated_low_confidence(0.34) benign(0.065) TCGA-CR-7374-01 1 149900966 149900966 G C MTMR11 3'UTR 0.22 TCGA-CR-7374-01 1 152275982 152275982 G A FLG Nonsense_Mutation p.Q3794* 0.34 TCGA-CR-7374-01 1 153949693 153949710 CTGGGGGAGGCCAGGCCT - JTB In_Frame_Del p.R7_Q12del 0.19 TCGA-CR-7374-01 1 156263979 156263979 G C C1orf85 Missense_Mutation p.L210V 0.15 deleterious(0) possibly_damaging(0.469) TCGA-CR-7374-01 1 158549486 158549486 G C OR10X1 Missense_Mutation p.D68E 0.27 tolerated(0.21) benign(0.127) TCGA-CR-7374-01 1 158725260 158725260 G A OR6K6 Missense_Mutation p.D219N 0.26 deleterious(0.02) possibly_damaging(0.768) TCGA-CR-7374-01 1 160264643 160264662 CTTCCCTACAGAGGGAAGGA - COPA Splice_Site p.X835_splice 0.26 TCGA-CR-7374-01 1 167742587 167742587 C G MPZL1 Missense_Mutation p.S196C 0.06 deleterious(0.01) possibly_damaging(0.625) TCGA-CR-7374-01 1 169510654 169510654 G T F5 Missense_Mutation p.A1225D 0.31 tolerated(1) benign(0.001) TCGA-CR-7374-01 1 190067106 190067106 A G BRINP3 3'UTR 0.29 TCGA-CR-7374-01 1 190067943 190067943 C T BRINP3 Silent p.Q502Q 0.17 TCGA-CR-7374-01 1 207103594 207103594 G C PIGR 3'UTR 0.17 TCGA-CR-7374-01 1 207110641 207110641 C A PIGR Missense_Mutation p.V282F 0.29 deleterious(0) probably_damaging(0.93) TCGA-CR-7374-01 1 209933400 209933400 C T TRAF3IP3 Missense_Mutation p.P6S 0.26 tolerated(0.1) benign(0.223) TCGA-CR-7374-01 1 215848133 215848133 C T USH2A Missense_Mutation p.V4374I 0.30 benign(0.167) TCGA-CR-7374-01 1 216052268 216052268 C - USH2A Frame_Shift_Del p.G2799Vfs*31 0.25 TCGA-CR-7374-01 1 216850476 216850476 G C ESRRG Nonsense_Mutation p.Y143* 0.28 TCGA-CR-7374-01 1 225598118 225598118 C A LBR Missense_Mutation p.V397L 0.33 tolerated(0.11) possibly_damaging(0.851) TCGA-CR-7374-01 1 226176001 226176001 T C SDE2 Missense_Mutation p.M244V 0.30 tolerated(0.6) benign(0) TCGA-CR-7374-01 1 231069578 231069578 C G TTC13 Missense_Mutation p.L310F 0.19 deleterious(0) probably_damaging(0.995) TCGA-CR-7374-01 1 236399573 236399573 G T ERO1LB Intron 0.06 TCGA-CR-7374-01 1 237167691 237167691 C G MT1HL1 5'UTR 0.34 TCGA-CR-7374-01 1 237951342 237951342 G T RYR2 Missense_Mutation p.K4461N 0.41 probably_damaging(0.937) TCGA-CR-7374-01 1 240256603 240256603 C A FMN2 Silent p.P398P 0.31 TCGA-CR-7374-01 1 240371048 240371048 C A FMN2 Missense_Mutation p.P979H 0.41 unknown(0) TCGA-CR-7374-01 1 240635698 240635698 G A FMN2 Missense_Mutation p.R1696K 0.25 benign(0.082) TCGA-CR-7374-01 1 241519074 241519074 C A RGS7 Translation_Start_Site p.M1? 0.30 tolerated_low_confidence(0.14) possibly_damaging(0.679) TCGA-CR-7374-01 1 247655015 247655015 G T OR2W5 RNA 0.35 TCGA-CR-7374-01 1 247695641 247695641 G T OR2C3 Missense_Mutation p.T58K 0.38 deleterious(0) probably_damaging(0.994) TCGA-CR-7374-01 1 248039588 248039588 G A TRIM58 Missense_Mutation p.G420S 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 1 248129228 248129228 C A OR2AK2 Missense_Mutation p.L199I 0.10 deleterious(0.04) possibly_damaging(0.58) TCGA-CR-7374-01 1 248813773 248813773 C G OR2T27 Missense_Mutation p.R138P 0.26 tolerated(0.28) benign(0.035) TCGA-CR-7374-01 1 31423055 31423055 G A PUM1 Silent p.V925V 0.08 TCGA-CR-7374-01 1 40319737 40319737 C T TRIT1 Missense_Mutation p.E107K 0.14 deleterious(0.02) possibly_damaging(0.555) TCGA-CR-7374-01 1 41107389 41107389 G A RIMS3 Missense_Mutation p.P70L 0.15 deleterious_low_confidence(0) benign(0.004) TCGA-CR-7374-01 1 50661352 50661352 G T ELAVL4 Missense_Mutation p.A227S 0.36 deleterious(0.04) possibly_damaging(0.71) TCGA-CR-7374-01 1 66838453 66838453 A G PDE4B 3'UTR 0.35 TCGA-CR-7374-01 1 78279429 78279429 G A FAM73A Silent p.L216L 0.46 TCGA-CR-7374-01 1 85498622 85498622 G C MCOLN3 Missense_Mutation p.P190A 0.46 tolerated(0.06) possibly_damaging(0.677) TCGA-CR-7374-01 1 93672782 93672782 G C CCDC18 Missense_Mutation p.E400Q 0.16 tolerated(0.08) possibly_damaging(0.691) TCGA-CR-7374-01 20 20350277 20350277 C T INSM1 Nonsense_Mutation p.Q456* 0.27 TCGA-CR-7374-01 20 31652345 31652345 G T BPIFB3 Silent p.L245L 0.30 TCGA-CR-7374-01 20 3324338 3324338 T A C20orf194 Missense_Mutation p.H277L 0.53 deleterious(0.04) benign(0.39) TCGA-CR-7374-01 20 35559189 35559189 T C SAMHD1 Missense_Mutation p.Q200R 0.31 deleterious(0) benign(0.41) TCGA-CR-7374-01 20 422475 422475 C A TBC1D20 Intron 0.37 TCGA-CR-7374-01 20 4865411 4865411 G A SLC23A2 Silent p.P210P 0.22 TCGA-CR-7374-01 20 62321524 62321524 C T RTEL1 Silent p.I766I 0.08 TCGA-CR-7374-01 20 62591451 62591451 C G ZNF512B Missense_Mutation p.R823S 0.05 deleterious(0.01) benign(0.146) TCGA-CR-7374-01 21 15326473 15326473 T A ANKRD20A11P Splice_Site 0.20 TCGA-CR-7374-01 21 33671361 33671361 G C MRAP Missense_Mutation p.D27H 0.08 deleterious(0) probably_damaging(0.998) TCGA-CR-7374-01 21 34003713 34003713 G A SYNJ1 Silent p.I1477I 0.23 TCGA-CR-7374-01 21 42080487 42080487 G A DSCAM Missense_Mutation p.P85L 0.04 deleterious(0.01) possibly_damaging(0.593) TCGA-CR-7374-01 22 21159259 21159259 C T PI4KA Intron 0.18 TCGA-CR-7374-01 22 29191483 29191483 C G XBP1 3'UTR 0.09 TCGA-CR-7374-01 22 29940543 29940543 C T THOC5 Missense_Mutation p.G49D 0.04 tolerated(0.61) benign(0.02) TCGA-CR-7374-01 22 31091189 31091189 C T OSBP2 Missense_Mutation p.S98L 0.11 tolerated_low_confidence(0.21) benign(0) TCGA-CR-7374-01 22 50718166 50718166 T A PLXNB2 Missense_Mutation p.I1428F 0.34 deleterious(0) probably_damaging(0.993) TCGA-CR-7374-01 22 50860746 50860746 C T PPP6R2 Silent p.S304S 0.06 TCGA-CR-7374-01 2 116257182 116257182 T A DPP10 Splice_Site p.X126_splice 0.36 TCGA-CR-7374-01 2 11809734 11809734 C A NTSR2 Missense_Mutation p.M174I 0.58 tolerated(0.07) benign(0.033) TCGA-CR-7374-01 2 131100699 131100699 G T IMP4 Missense_Mutation p.R15L 0.37 deleterious(0) unknown(0) TCGA-CR-7374-01 2 131521734 131521734 C T AMER3 Missense_Mutation p.P697S 0.34 tolerated(0.53) benign(0.037) TCGA-CR-7374-01 2 132021201 132021201 G A POTEE Missense_Mutation p.D725N 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.908) TCGA-CR-7374-01 2 141032165 141032165 C A LRP1B Missense_Mutation p.V4324L 0.36 benign(0.167) TCGA-CR-7374-01 2 143986215 143986215 A G ARHGAP15 Missense_Mutation p.K121R 0.36 tolerated(0.05) probably_damaging(0.934) TCGA-CR-7374-01 2 166847776 166847776 A T SCN1A Missense_Mutation p.D2003E 0.39 tolerated_low_confidence(1) benign(0.001) TCGA-CR-7374-01 2 167056097 167056097 A G SCN9A Silent p.F1673F 0.25 TCGA-CR-7374-01 2 168103763 168103763 C A XIRP2 Missense_Mutation p.A1954E 0.21 benign(0.004) TCGA-CR-7374-01 2 168107805 168107805 G A XIRP2 Silent p.V3301V 0.27 TCGA-CR-7374-01 2 168115224 168115224 A G XIRP2 3'UTR 0.24 TCGA-CR-7374-01 2 171260886 171260886 C A MYO3B Missense_Mutation p.Q803K 0.32 tolerated(0.37) benign(0.034) TCGA-CR-7374-01 2 179452324 179452324 G A TTN Missense_Mutation p.R21238C 0.21 TCGA-CR-7374-01 2 179469614 179469614 G C TTN Missense_Mutation p.P18068A 0.29 TCGA-CR-7374-01 2 180308165 180308165 T C ZNF385B Missense_Mutation p.K410E 0.21 deleterious(0) possibly_damaging(0.65) TCGA-CR-7374-01 2 180383318 180383318 G T ZNF385B Silent p.S148S 0.37 TCGA-CR-7374-01 2 185801142 185801142 T C ZNF804A Missense_Mutation p.V340A 0.31 tolerated(0.5) benign(0.133) TCGA-CR-7374-01 2 197863757 197863757 C A ANKRD44 Missense_Mutation p.A822S 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-CR-7374-01 2 202575803 202575803 G C ALS2 Missense_Mutation p.Q1345E 0.20 tolerated(0.2) benign(0.017) TCGA-CR-7374-01 2 209180091 209180091 C T PIKFYVE Silent p.I667I 0.32 TCGA-CR-7374-01 2 211018891 211018891 G C KANSL1L Nonsense_Mutation p.S139* 0.06 TCGA-CR-7374-01 2 211163191 211163191 G C MYL1 Missense_Mutation p.P86R 0.43 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 2 212589868 212589868 T A ERBB4 Missense_Mutation p.Y225F 0.45 tolerated(0.56) benign(0.007) TCGA-CR-7374-01 2 216269263 216269263 G A FN1 Silent p.T1034T 0.51 TCGA-CR-7374-01 2 241514540 241514540 G A RNPEPL1 Missense_Mutation p.R230H 0.52 tolerated(0.17) benign(0.001) TCGA-CR-7374-01 2 242187504 242187504 G T HDLBP Missense_Mutation p.Q549K 0.52 tolerated(0.43) benign(0.001) TCGA-CR-7374-01 2 24507701 24507701 C G ITSN2 Missense_Mutation p.M625I 0.40 tolerated(0.09) unknown(0) TCGA-CR-7374-01 2 64085024 64085024 G T UGP2 Missense_Mutation p.G70V 0.30 deleterious(0.01) benign(0.092) TCGA-CR-7374-01 2 71206951 71206951 G T ANKRD53 Missense_Mutation p.C193F 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 2 79349251 79349251 G T REG1A Missense_Mutation p.K107N 0.32 tolerated(0.44) possibly_damaging(0.894) TCGA-CR-7374-01 2 79386513 79386513 G T REG3A Missense_Mutation p.L7M 0.24 deleterious(0.02) probably_damaging(0.919) TCGA-CR-7374-01 2 80874994 80874994 C A CTNNA2 Missense_Mutation p.F905L 0.33 tolerated_low_confidence(0.06) benign(0.087) TCGA-CR-7374-01 2 85777030 85777030 A G GGCX 3'UTR 0.24 TCGA-CR-7374-01 2 88424028 88424028 G A FABP1 Silent p.G106G 0.35 TCGA-CR-7374-01 2 89976394 89976394 G A IGKV2D-30 Missense_Mutation p.G89S 0.08 deleterious(0.01) probably_damaging(1) TCGA-CR-7374-01 2 90199094 90199094 C A IGKV1D-12 Missense_Mutation p.S85R 0.30 deleterious(0.05) possibly_damaging(0.47) TCGA-CR-7374-01 2 99787024 99787024 G A MITD1 Missense_Mutation p.S190F 0.28 deleterious(0) possibly_damaging(0.765) TCGA-CR-7374-01 3 112647682 112647682 C A CD200R1 Silent p.L250L 0.33 TCGA-CR-7374-01 3 114026751 114026751 C T TIGIT Missense_Mutation p.L170F 0.16 tolerated(0.22) benign(0.02) TCGA-CR-7374-01 3 122003103 122003103 G T CASR Missense_Mutation p.G778C 0.34 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 3 12208791 12208791 G C SYN2 RNA 0.15 TCGA-CR-7374-01 3 124390618 124390618 C T KALRN Missense_Mutation p.A363V 0.11 tolerated(1) benign(0) TCGA-CR-7374-01 3 150690259 150690259 C T CLRN1 Silent p.R79R 0.25 TCGA-CR-7374-01 3 160099294 160099294 C G IFT80 Missense_Mutation p.D86H 0.12 deleterious(0) probably_damaging(0.994) TCGA-CR-7374-01 3 174814867 174814867 A T NAALADL2 Missense_Mutation p.T111S 0.20 tolerated(0.27) benign(0.007) TCGA-CR-7374-01 3 174951960 174951960 C T NAALADL2 Missense_Mutation p.S262L 0.15 deleterious(0.02) possibly_damaging(0.791) TCGA-CR-7374-01 3 178921521 178921521 A G PIK3CA Missense_Mutation p.R335G 0.11 deleterious(0) benign(0.33) TCGA-CR-7374-01 3 182790247 182790247 G A MCCC1 Missense_Mutation p.S133L 0.06 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 3 196509690 196509690 C T PAK2 Missense_Mutation p.S58L 0.08 tolerated(0.49) benign(0.01) TCGA-CR-7374-01 3 196846384 196846384 C G DLG1 Missense_Mutation p.D428H 0.08 deleterious(0.04) possibly_damaging(0.878) TCGA-CR-7374-01 3 27463267 27463267 C T SLC4A7 Missense_Mutation p.D415N 0.60 tolerated(0.47) probably_damaging(1) TCGA-CR-7374-01 3 43596801 43596801 G C ANO10 Nonsense_Mutation p.S546* 0.06 TCGA-CR-7374-01 3 44541821 44541821 C G ZNF852 Missense_Mutation p.E150Q 0.20 tolerated(1) benign(0.009) TCGA-CR-7374-01 3 46482938 46482938 C A LTF Silent p.V564V 0.68 TCGA-CR-7374-01 3 47049354 47049354 C G NBEAL2 Nonsense_Mutation p.S2519* 0.29 TCGA-CR-7374-01 3 47049787 47049787 C G NBEAL2 Missense_Mutation p.I2578M 0.24 deleterious(0) probably_damaging(0.991) TCGA-CR-7374-01 3 47950644 47950644 C T MAP4 Intron 0.04 TCGA-CR-7374-01 3 4829703 4829703 G A ITPR1 Missense_Mutation p.E2215K 0.11 deleterious(0.02) benign(0.196) TCGA-CR-7374-01 3 50380755 50380755 C G ZMYND10 Missense_Mutation p.D165H 0.28 deleterious(0.04) benign(0.003) TCGA-CR-7374-01 3 66460596 66460596 T C LRIG1 Missense_Mutation p.I298V 0.50 tolerated(0.06) benign(0.267) TCGA-CR-7374-01 3 69239050 69239050 C T FRMD4B Missense_Mutation p.D590N 0.35 deleterious(0) benign(0.388) TCGA-CR-7374-01 3 98109533 98109533 G C OR5K3 Missense_Mutation p.L8F 0.25 tolerated(0.06) benign(0.006) TCGA-CR-7374-01 4 104068734 104068734 T C CENPE Missense_Mutation p.M1305V 0.52 benign(0) TCGA-CR-7374-01 4 109822296 109822296 C T COL25A1 Silent p.Q271Q 0.21 TCGA-CR-7374-01 4 123155982 123155982 A G KIAA1109 Silent p.K1126K 0.47 TCGA-CR-7374-01 4 123855336 123855336 G T SPATA5 Missense_Mutation p.G197V 0.41 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 4 128741604 128741604 G C HSPA4L Missense_Mutation p.D566H 0.34 deleterious(0.01) possibly_damaging(0.695) TCGA-CR-7374-01 4 128743942 128743942 G T HSPA4L Missense_Mutation p.D611Y 0.37 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 4 128748493 128748493 G C HSPA4L Missense_Mutation p.E694Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 4 164247211 164247211 C T NPY1R Missense_Mutation p.A166T 0.44 deleterious(0) probably_damaging(0.938) TCGA-CR-7374-01 4 176573001 176573001 C T GPM6A Silent p.L175L 0.06 TCGA-CR-7374-01 4 187521277 187521277 C A FAT1 Nonsense_Mutation p.G3960* 0.47 TCGA-CR-7374-01 4 62778453 62778453 G A LPHN3 Missense_Mutation p.R629H 0.51 deleterious(0.01) probably_damaging(0.995) TCGA-CR-7374-01 4 72205125 72205125 G C SLC4A4 Missense_Mutation p.E98Q 0.10 tolerated(0.09) benign(0.196) TCGA-CR-7374-01 4 73280591 73280591 T A ADAMTS3 Missense_Mutation p.Y201F 0.47 deleterious(0) possibly_damaging(0.651) TCGA-CR-7374-01 4 79285132 79285132 C G FRAS1 Silent p.L882L 0.12 TCGA-CR-7374-01 4 88584164 88584164 C T DMP1 Missense_Mutation p.L412F 0.49 tolerated(0.06) unknown(0) TCGA-CR-7374-01 5 102890447 102890447 C T NUDT12 Missense_Mutation p.E358K 0.24 deleterious(0) probably_damaging(0.98) TCGA-CR-7374-01 5 11023077 11023077 G A CTNND2 Nonsense_Mutation p.R935* 0.45 TCGA-CR-7374-01 5 11346514 11346514 G T CTNND2 Missense_Mutation p.P533Q 0.39 deleterious(0) probably_damaging(0.985) TCGA-CR-7374-01 5 113831600 113831600 C T KCNN2 Silent p.N487N 0.24 TCGA-CR-7374-01 5 118576160 118576160 G C DMXL1 Missense_Mutation p.V2879L 0.29 deleterious(0) benign(0.05) TCGA-CR-7374-01 5 140347910 140347910 C T PCDHAC2 Missense_Mutation p.S520F 0.05 deleterious(0) probably_damaging(0.997) TCGA-CR-7374-01 5 140581330 140581330 C G PCDHB11 Silent p.L661L 0.05 TCGA-CR-7374-01 5 140719457 140719457 C T PCDHGA2 Silent p.L307L 0.05 TCGA-CR-7374-01 5 140795002 140795002 C T PCDHGA10 Silent p.L754L 0.40 TCGA-CR-7374-01 5 145439601 145439601 C T SH3RF2 Silent p.L576L 0.33 TCGA-CR-7374-01 5 161324208 161324208 C A GABRA1 Missense_Mutation p.P384Q 0.43 tolerated(0.13) probably_damaging(0.999) TCGA-CR-7374-01 5 16783479 16783479 C A MYO10 Missense_Mutation p.K189N 0.27 tolerated(0.12) benign(0.185) TCGA-CR-7374-01 5 178358636 178358636 A T ZFP2 Missense_Mutation p.S108C 0.40 deleterious(0) benign(0.267) TCGA-CR-7374-01 5 26890642 26890642 G T CDH9 Missense_Mutation p.R429S 0.26 tolerated(0.15) possibly_damaging(0.506) TCGA-CR-7374-01 5 35039554 35039554 C T AGXT2 Silent p.T79T 0.27 TCGA-CR-7374-01 5 41055916 41055916 G T MROH2B Missense_Mutation p.Q321K 0.21 tolerated(0.61) probably_damaging(0.925) TCGA-CR-7374-01 5 52778754 52778754 G A FST Missense_Mutation p.V44I 0.10 tolerated(0.18) benign(0.001) TCGA-CR-7374-01 5 71501008 71501008 G A MAP1B Missense_Mutation p.S2450N 0.05 probably_damaging(0.997) TCGA-CR-7374-01 5 77311320 77311320 C A AP3B1 Missense_Mutation p.Q1015H 0.67 deleterious(0.01) benign(0.216) TCGA-CR-7374-01 5 80640770 80640770 G A ACOT12 Silent p.Y288Y 0.28 TCGA-CR-7374-01 5 90106677 90106677 T A GPR98 Silent p.A5200A 0.32 TCGA-CR-7374-01 5 90106682 90106682 C A GPR98 Missense_Mutation p.S5202Y 0.33 benign(0.012) TCGA-CR-7374-01 5 9066745 9066745 C A SEMA5A Missense_Mutation p.C696F 0.30 deleterious(0) probably_damaging(0.959) TCGA-CR-7374-01 6 121482138 121482138 C A TBC1D32 Missense_Mutation p.G879C 0.27 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 6 13185055 13185055 G A PHACTR1 Missense_Mutation p.S116N 0.08 tolerated(0.15) benign(0) TCGA-CR-7374-01 6 135518296 135518296 A T MYB Missense_Mutation p.L467F 0.25 tolerated(0.76) benign(0.004) TCGA-CR-7374-01 6 136990454 136990454 G A MAP3K5 Nonsense_Mutation p.Q445* 0.26 TCGA-CR-7374-01 6 147684646 147684646 G A STXBP5 Silent p.Q907Q 0.23 TCGA-CR-7374-01 6 26197326 26197326 C T HIST1H3D Silent p.E51E 0.31 TCGA-CR-7374-01 6 26370714 26370714 G T BTN3A2 Missense_Mutation p.G200C 0.25 deleterious(0.02) possibly_damaging(0.473) TCGA-CR-7374-01 6 27834576 27834576 G A HIST1H1B 3'UTR 0.24 TCGA-CR-7374-01 6 28541503 28541503 A C SCAND3 Silent p.P721P 0.11 TCGA-CR-7374-01 6 30043359 30043359 C G RNF39 Missense_Mutation p.D70H 0.36 deleterious_low_confidence(0) benign(0.365) TCGA-CR-7374-01 6 32797792 32797792 G C TAP2 Missense_Mutation p.S570R 0.30 tolerated(0.12) benign(0.048) TCGA-CR-7374-01 6 33283712 33283712 G C ZBTB22 Missense_Mutation p.L328V 0.09 tolerated(0.07) probably_damaging(0.981) TCGA-CR-7374-01 6 33287564 33287564 G C DAXX Silent p.G511G 0.07 TCGA-CR-7374-01 6 35378951 35378951 C G PPARD Silent p.L29L 0.18 TCGA-CR-7374-01 6 36106682 36106682 G A MAPK13 Missense_Mutation p.E290K 0.21 tolerated(0.28) possibly_damaging(0.71) TCGA-CR-7374-01 6 38759381 38759381 C T DNAH8 Silent p.A727A 0.35 TCGA-CR-7374-01 6 41250265 41250265 C G TREM1 Missense_Mutation p.D92H 0.19 tolerated(0.12) possibly_damaging(0.534) TCGA-CR-7374-01 6 44224086 44224086 C T SLC35B2 Missense_Mutation p.G118E 0.30 deleterious(0) probably_damaging(0.996) TCGA-CR-7374-01 6 46830642 46830642 G C GPR116 Missense_Mutation p.L728V 0.19 deleterious(0.04) possibly_damaging(0.685) TCGA-CR-7374-01 6 47200672 47200672 G C TNFRSF21 Missense_Mutation p.I599M 0.06 deleterious(0) probably_damaging(0.985) TCGA-CR-7374-01 6 52993279 52993279 G A GCM1 Missense_Mutation p.P346S 0.19 tolerated(0.18) benign(0.029) TCGA-CR-7374-01 6 56484146 56484146 C T DST Intron 0.29 TCGA-CR-7374-01 6 70071204 70071204 C A BAI3 Missense_Mutation p.P1347T 0.39 deleterious(0.02) benign(0.031) TCGA-CR-7374-01 6 71185189 71185189 T C FAM135A Silent p.N78N 0.10 TCGA-CR-7374-01 6 75994456 75994456 G A TMEM30A 5'UTR 0.28 TCGA-CR-7374-01 6 90331648 90331648 G T ANKRD6 Missense_Mutation p.R267L 0.24 deleterious(0.01) possibly_damaging(0.715) TCGA-CR-7374-01 6 9900667 9900667 C G OFCC1 Intron 0.08 TCGA-CR-7374-01 7 100466214 100466214 C T TRIP6 Missense_Mutation p.P154L 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7374-01 7 100677694 100677694 G T MUC17 Missense_Mutation p.E999D 0.47 possibly_damaging(0.716) TCGA-CR-7374-01 7 101918582 101918582 C G CUX1 Missense_Mutation p.I503M 0.11 deleterious(0) probably_damaging(0.979) TCGA-CR-7374-01 7 102065581 102065581 C G PRKRIP1 3'UTR 0.55 TCGA-CR-7374-01 7 129948163 129948163 A C CPA4 Missense_Mutation p.K240T 0.45 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 7 143454040 143454040 C T CTAGE6 Missense_Mutation p.V238M 0.44 deleterious(0.04) benign(0.346) TCGA-CR-7374-01 7 143772094 143772094 C A OR2A25 Missense_Mutation p.P261H 0.44 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 7 1481953 1481953 G T MICALL2 Missense_Mutation p.S529Y 0.08 deleterious(0.03) possibly_damaging(0.707) TCGA-CR-7374-01 7 148311217 148311217 G T C7orf33 Missense_Mutation p.W96C 0.32 tolerated_low_confidence(0.12) possibly_damaging(0.878) TCGA-CR-7374-01 7 150325508 150325508 T C GIMAP6 Missense_Mutation p.I60V 0.04 deleterious(0) probably_damaging(0.973) TCGA-CR-7374-01 7 150557669 150557669 C A AOC1 Missense_Mutation p.P646Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 7 21640667 21640667 T C DNAH11 Missense_Mutation p.F1099L 0.23 benign(0.003) TCGA-CR-7374-01 7 23348989 23348989 C T MALSU1 Missense_Mutation p.H178Y 0.22 deleterious(0.03) probably_damaging(1) TCGA-CR-7374-01 7 23351916 23351916 C T IGF2BP3 3'UTR 0.16 TCGA-CR-7374-01 7 35673933 35673933 G C HERPUD2 Missense_Mutation p.L350V 0.36 tolerated(0.15) benign(0.119) TCGA-CR-7374-01 7 44091508 44091508 C T DBNL Silent p.N73N 0.25 TCGA-CR-7374-01 7 4722314 4722314 C G FOXK1 Missense_Mutation p.I125M 0.13 deleterious(0) probably_damaging(0.997) TCGA-CR-7374-01 7 4800781 4800781 G A FOXK1 Missense_Mutation p.G595R 0.30 tolerated(0.13) possibly_damaging(0.739) TCGA-CR-7374-01 7 5353145 5353145 C T TNRC18 Silent p.E2459E 0.36 TCGA-CR-7374-01 7 56147375 56147375 C T SUMF2 Silent p.S296S 0.31 TCGA-CR-7374-01 7 66236935 66236935 C G RABGEF1 Missense_Mutation p.L17V 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 7 66479523 66479523 C T TYW1 Missense_Mutation p.S182F 0.18 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 7 87056098 87056098 G A ABCB4 Nonsense_Mutation p.Q678* 0.41 TCGA-CR-7374-01 7 91924262 91924262 C G ANKIB1 5'UTR 0.63 TCGA-CR-7374-01 7 94057155 94057155 A C COL1A2 Missense_Mutation p.T1162P 0.55 unknown(0) TCGA-CR-7374-01 8 103335611 103335611 C A UBR5 Missense_Mutation p.S571I 0.24 tolerated(0.25) benign(0.444) TCGA-CR-7374-01 8 110980568 110980568 G A KCNV1 Missense_Mutation p.L418F 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7374-01 8 113668540 113668540 C G CSMD3 Silent p.L949L 0.27 TCGA-CR-7374-01 8 134232922 134232922 G T WISP1 Missense_Mutation p.A150S 0.27 tolerated(0.05) benign(0.283) TCGA-CR-7374-01 8 144358699 144358699 C T GLI4 Nonsense_Mutation p.Q286* 0.36 TCGA-CR-7374-01 8 144463846 144463846 G A RHPN1 Silent p.S531S 0.34 TCGA-CR-7374-01 8 35608237 35608237 G T UNC5D Silent p.L691L 0.09 TCGA-CR-7374-01 8 35624547 35624547 A G UNC5D Missense_Mutation p.H814R 0.44 deleterious(0.01) benign(0.256) TCGA-CR-7374-01 8 38153445 38153445 C T WHSC1L1 Silent p.S928S 0.61 TCGA-CR-7374-01 8 41792081 41792081 T C KAT6A Silent p.L1219L 0.45 TCGA-CR-7374-01 8 64099575 64099575 C T YTHDF3 Missense_Mutation p.P335S 0.33 tolerated(0.14) possibly_damaging(0.803) TCGA-CR-7374-01 8 69005862 69005862 A T PREX2 Missense_Mutation p.Y758F 0.31 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-CR-7374-01 8 95547138 95547138 G A KIAA1429 Missense_Mutation p.S138F 0.28 deleterious(0) probably_damaging(0.997) TCGA-CR-7374-01 9 107288743 107288743 T C OR13C4 Missense_Mutation p.I250V 0.55 tolerated(0.35) benign(0.116) TCGA-CR-7374-01 9 107586827 107586827 G A ABCA1 Missense_Mutation p.P859S 0.58 deleterious(0.01) probably_damaging(0.953) TCGA-CR-7374-01 9 117405675 117405675 C A C9orf91 3'UTR 0.43 TCGA-CR-7374-01 9 130485521 130485521 C T TTC16 Silent p.L261L 0.66 TCGA-CR-7374-01 9 131768858 131768858 G A NUP188 Silent p.S1717S 0.58 TCGA-CR-7374-01 9 136522303 136522303 C A DBH Missense_Mutation p.F558L 0.40 tolerated(0.58) benign(0.15) TCGA-CR-7374-01 9 34493300 34493300 A G DNAI1 Missense_Mutation p.R264G 0.42 tolerated(0.08) benign(0.003) TCGA-CR-7374-01 9 43626492 43626492 C G SPATA31A6 Missense_Mutation p.R732T 0.26 tolerated(0.12) benign(0.041) TCGA-CR-7374-01 9 712501 712501 G C KANK1 Missense_Mutation p.D579H 0.13 deleterious(0) possibly_damaging(0.894) TCGA-CR-7374-01 9 84609741 84609741 G A SPATA31D1 Silent p.E1452E 0.46 TCGA-CR-7374-01 X 101139207 101139207 C G ZMAT1 Missense_Mutation p.D398H 0.04 deleterious(0) probably_damaging(0.982) TCGA-CR-7374-01 X 106840889 106840890 - C FRMPD3 Frame_Shift_Ins p.R628Pfs*12 0.34 TCGA-CR-7374-01 X 122318400 122318400 A G GRIA3 Missense_Mutation p.K5E 0.47 tolerated_low_confidence(0.06) benign(0) TCGA-CR-7374-01 X 12904444 12904444 T G TLR7 Missense_Mutation p.C273G 0.45 deleterious(0) probably_damaging(1) TCGA-CR-7374-01 X 144906314 144906314 C T SLITRK2 Nonsense_Mutation p.R791* 0.47 TCGA-CR-7374-01 X 153594777 153594777 T A FLNA Missense_Mutation p.K376M 0.16 tolerated(0.39) benign(0.076) TCGA-CR-7374-01 X 21863309 21863309 T G MBTPS2 Missense_Mutation p.F82C 0.51 deleterious(0) benign(0.349) TCGA-CR-7374-01 X 36162677 36162677 G C CHDC2 Splice_Site p.X421_splice 0.40 TCGA-CR-7374-01 X 41069829 41069829 G T USP9X Missense_Mutation p.D1695Y 0.54 deleterious(0) probably_damaging(0.983) TCGA-CR-7374-01 X 53634558 53634558 G A HUWE1 Missense_Mutation p.L808F 0.10 probably_damaging(1) TCGA-CR-7374-01 X 54469925 54469925 G T TSR2 Splice_Site p.X88_splice 0.28 TCGA-CR-7374-01 X 57313310 57313310 G A FAAH2 Missense_Mutation p.G18S 0.20 tolerated(0.36) benign(0.043) TCGA-CR-7374-01 X 70520068 70520068 G C NONO 3'UTR 0.21 TCGA-CR-7374-01 X 73960704 73960704 C T KIAA2022 Missense_Mutation p.A1230T 0.28 tolerated(0.2) benign(0.035) TCGA-CR-7374-01 X 76874427 76874427 G C ATRX Missense_Mutation p.I1765M 0.16 probably_damaging(0.996) TCGA-CR-7374-01 X 90690736 90690736 G T PABPC5 Missense_Mutation p.V54L 0.45 tolerated(0.1) benign(0.101) TCGA-CR-7374-01 X 99854535 99854535 C A TNMD Missense_Mutation p.L259M 0.61 deleterious(0.03) possibly_damaging(0.564) TCGA-CR-7376-01 10 28228887 28228887 A G ARMC4 Missense_Mutation p.V679A 0.07 deleterious(0) probably_damaging(1) TCGA-CR-7376-01 10 30630542 30630542 C G MTPAP Missense_Mutation p.R62T 0.07 tolerated(1) benign(0.002) TCGA-CR-7376-01 10 77818491 77818491 C T C10orf11 Nonsense_Mutation p.R128* 0.10 TCGA-CR-7376-01 11 1018367 1018367 T A MUC6 Silent p.S1478S 0.08 TCGA-CR-7376-01 11 118404820 118404820 A T TMEM25 Missense_Mutation p.N305Y 0.14 deleterious(0) possibly_damaging(0.836) TCGA-CR-7376-01 11 1501645 1501645 G A MOB2 Nonsense_Mutation p.Q115* 0.11 TCGA-CR-7376-01 11 71808908 71808908 T A LAMTOR1 Missense_Mutation p.D149V 0.07 deleterious(0) possibly_damaging(0.576) TCGA-CR-7376-01 12 107393445 107393445 C G CRY1 Missense_Mutation p.D341H 0.06 deleterious(0) probably_damaging(1) TCGA-CR-7376-01 12 121867998 121867998 G T KDM2B 3'UTR 0.09 TCGA-CR-7376-01 12 2107117 2107117 A T DCP1B Missense_Mutation p.L59I 0.07 deleterious(0.03) probably_damaging(0.996) TCGA-CR-7376-01 12 30869532 30869532 G C CAPRIN2 Missense_Mutation p.Q743E 0.07 tolerated(0.13) possibly_damaging(0.844) TCGA-CR-7376-01 12 45782051 45782051 C G ANO6 Missense_Mutation p.R446G 0.07 deleterious(0.02) possibly_damaging(0.527) TCGA-CR-7376-01 12 9251236 9251236 G A A2M Silent p.L606L 0.15 TCGA-CR-7376-01 13 36229804 36229804 C T NBEA Silent p.I2739I 0.04 TCGA-CR-7376-01 14 31774252 31774252 G A RP11-596D21.1 3'Flank 0.12 TCGA-CR-7376-01 14 91780018 91780018 C G CCDC88C Missense_Mutation p.E714D 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-CR-7376-01 14 97321591 97321591 C T VRK1 Missense_Mutation p.R203W 0.06 deleterious(0) possibly_damaging(0.792) TCGA-CR-7376-01 16 30777510 30777510 G C RNF40 Missense_Mutation p.E340D 0.05 tolerated(0.06) benign(0.085) TCGA-CR-7376-01 16 72108189 72108189 G A HPR Missense_Mutation p.R33H 0.12 tolerated(0.13) benign(0.001) TCGA-CR-7376-01 16 89696859 89696859 G A DPEP1 Missense_Mutation p.C14Y 0.12 deleterious(0) possibly_damaging(0.73) TCGA-CR-7376-01 17 10427914 10427914 G A MYH2 Missense_Mutation p.R1682C 0.09 deleterious(0) possibly_damaging(0.458) TCGA-CR-7376-01 17 7577098 7577098 T G TP53 Missense_Mutation p.R280S 0.12 deleterious(0.03) possibly_damaging(0.646) TCGA-CR-7376-01 17 7579698 7579699 - CC TP53 Splice_Site p.X32_splice 0.22 TCGA-CR-7376-01 18 31326305 31326305 A C ASXL3 Missense_Mutation p.K2165Q 0.06 possibly_damaging(0.581) TCGA-CR-7376-01 19 20295277 20295277 A C ZNF486 Missense_Mutation p.H48P 0.06 deleterious(0) benign(0.042) TCGA-CR-7376-01 19 51532606 51532606 A G KLK12 Silent p.Y233Y 0.10 TCGA-CR-7376-01 19 613894 613894 G A HCN2 Missense_Mutation p.R623Q 0.10 deleterious(0.03) possibly_damaging(0.477) TCGA-CR-7376-01 1 12920037 12920037 C T PRAMEF2 Silent p.F259F 0.08 TCGA-CR-7376-01 1 43812539 43812539 G A MPL Silent p.S414S 0.12 TCGA-CR-7376-01 1 47148983 47148983 G C EFCAB14 Missense_Mutation p.S434C 0.07 deleterious(0) probably_damaging(0.952) TCGA-CR-7376-01 20 44592204 44592204 G A ZNF335 Missense_Mutation p.R481C 0.05 deleterious(0) probably_damaging(0.995) TCGA-CR-7376-01 2 11767109 11767109 C T GREB1 Missense_Mutation p.P1443L 0.07 deleterious(0.03) benign(0.027) TCGA-CR-7376-01 2 1652027 1652027 G C PXDN Silent p.V1175V 0.08 TCGA-CR-7376-01 2 179439605 179439605 C T TTN Missense_Mutation p.E23752K 0.15 TCGA-CR-7376-01 2 204571365 204571365 C A CD28 5'UTR 0.28 TCGA-CR-7376-01 2 89544371 89544371 C G IGKV2-30 Missense_Mutation p.D85H 0.10 deleterious(0) benign(0.158) TCGA-CR-7376-01 3 30713559 30713559 C G TGFBR2 Nonsense_Mutation p.S320* 0.10 TCGA-CR-7376-01 3 38347718 38347718 G C SLC22A14 Missense_Mutation p.Q67H 0.11 deleterious(0.03) benign(0.17) TCGA-CR-7376-01 3 58514635 58514635 G C ACOX2 Silent p.L347L 0.10 TCGA-CR-7376-01 3 98251012 98251012 G T GPR15 Silent p.L45L 0.09 TCGA-CR-7376-01 4 126412367 126412367 C A FAT4 Missense_Mutation p.T4797K 0.07 probably_damaging(0.994) TCGA-CR-7376-01 5 139747331 139747331 C G SLC4A9 Silent p.L758L 0.09 TCGA-CR-7376-01 5 140242463 140242463 T G AC005609.1 Silent p.A171A 0.29 TCGA-CR-7376-01 5 140812277 140812277 C A PCDHGA12 Missense_Mutation p.Q651K 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-CR-7376-01 5 14504668 14504668 G C TRIO Missense_Mutation p.E2860Q 0.03 unknown(0) TCGA-CR-7376-01 6 106967352 106967352 G A AIM1 Missense_Mutation p.E349K 0.10 tolerated_low_confidence(0.13) benign(0.005) TCGA-CR-7376-01 6 29141890 29141890 C T OR2J2 Missense_Mutation p.H160Y 0.07 tolerated(0.06) possibly_damaging(0.849) TCGA-CR-7376-01 6 46658969 46658969 A G TDRD6 Missense_Mutation p.N1035S 0.04 tolerated(0.74) benign(0.004) TCGA-CR-7376-01 7 100205594 100205594 G A PCOLCE Silent p.E406E 0.11 TCGA-CR-7376-01 7 100685103 100685103 C T MUC17 Missense_Mutation p.P3469L 0.08 benign(0.2) TCGA-CR-7376-01 7 106520087 106520087 C T PIK3CG Missense_Mutation p.R839C 0.08 deleterious(0) probably_damaging(1) TCGA-CR-7376-01 7 107572693 107572693 C T LAMB1 Missense_Mutation p.A1440T 0.10 deleterious(0.04) possibly_damaging(0.657) TCGA-CR-7376-01 7 143701885 143701885 T G OR6B1 Missense_Mutation p.F266V 0.08 deleterious(0.02) benign(0.328) TCGA-CR-7376-01 7 151573605 151573605 C T PRKAG2 Missense_Mutation p.R34H 0.10 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CR-7376-01 7 45010270 45010270 G A MYO1G Missense_Mutation p.R380W 0.09 tolerated(0.17) probably_damaging(0.999) TCGA-CR-7376-01 7 56136270 56136270 C T SUMF2 Missense_Mutation p.R74W 0.08 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-CR-7376-01 7 66262383 66262383 G C KCTD7 Missense_Mutation p.K206N 0.08 tolerated(0.09) benign(0.02) TCGA-CR-7376-01 7 91682106 91682106 C G AKAP9 Nonsense_Mutation p.S1812* 0.13 TCGA-CR-7376-01 8 109001316 109001316 C T RSPO2 Missense_Mutation p.G84E 0.04 deleterious(0) probably_damaging(0.979) TCGA-CR-7376-01 8 113308235 113308235 G A CSMD3 Missense_Mutation p.A2814V 0.10 deleterious(0.02) possibly_damaging(0.49) TCGA-CR-7376-01 8 69005941 69005941 T C PREX2 Silent p.F784F 0.08 TCGA-CR-7376-01 8 69358591 69358591 G A C8orf34 Missense_Mutation p.R168K 0.06 deleterious(0.04) probably_damaging(0.99) TCGA-CR-7376-01 9 139411828 139411828 C A NOTCH1 Missense_Mutation p.G484V 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7376-01 9 36236908 36236908 T A GNE Silent p.I261I 0.07 TCGA-CR-7376-01 X 129201444 129201444 G A ELF4 Missense_Mutation p.S415L 0.19 tolerated(0.15) possibly_damaging(0.704) TCGA-CR-7376-01 X 14550468 14550468 A G GLRA2 Missense_Mutation p.D59G 0.20 deleterious(0) probably_damaging(0.954) TCGA-CR-7376-01 X 1460639 1460639 G A IL3RA 5'UTR 0.09 TCGA-CR-7376-01 X 16870184 16870184 T G RBBP7 Missense_Mutation p.N386T 0.12 tolerated(0.39) benign(0.414) TCGA-CR-7377-01 10 55600185 55600185 C A PCDH15 Missense_Mutation p.R1293L 0.13 deleterious(0) probably_damaging(0.993) TCGA-CR-7377-01 10 63829502 63829502 G A ARID5B Missense_Mutation p.G382D 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-7377-01 10 77160129 77160129 C G ZNF503 Missense_Mutation p.D107H 0.15 deleterious(0) possibly_damaging(0.818) TCGA-CR-7377-01 11 1156593 1156593 G A MUC5AC Missense_Mutation p.A204T 0.11 tolerated(0.17) benign(0.121) TCGA-CR-7377-01 11 123516409 123516409 G A SCN3B Silent p.A35A 0.12 TCGA-CR-7377-01 11 123516410 123516410 G A SCN3B Missense_Mutation p.A35V 0.12 deleterious(0) probably_damaging(0.989) TCGA-CR-7377-01 11 18054883 18054883 C G TPH1 Missense_Mutation p.D114H 0.11 deleterious(0) probably_damaging(1) TCGA-CR-7377-01 11 3038413 3038413 C A CARS Missense_Mutation p.A614S 0.10 tolerated(0.62) benign(0.004) TCGA-CR-7377-01 11 3697423 3697423 G A NUP98 Missense_Mutation p.S1790F 0.15 deleterious(0.01) probably_damaging(0.958) TCGA-CR-7377-01 11 66033999 66033999 G A KLC2 Intron 0.38 TCGA-CR-7377-01 11 6632171 6632173 CTT - TAF10 In_Frame_Del p.K213del 0.11 TCGA-CR-7377-01 11 68701351 68701351 G A IGHMBP2 Missense_Mutation p.E503K 0.30 tolerated(0.88) benign(0.071) TCGA-CR-7377-01 11 76919561 76919561 C T MYO7A Silent p.D1981D 0.12 TCGA-CR-7377-01 12 108102726 108102726 A G PWP1 Silent p.V367V 0.12 TCGA-CR-7377-01 12 110788113 110788113 G A ATP2A2 3'Flank 0.09 TCGA-CR-7377-01 12 126139185 126139185 T A TMEM132B Missense_Mutation p.C1056S 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7377-01 12 21668638 21668638 A G GOLT1B Silent p.V138V 0.12 TCGA-CR-7377-01 12 48543152 48543152 T C ASB8 Silent p.E288E 0.10 TCGA-CR-7377-01 12 49521800 49521800 C A TUBA1B Nonsense_Mutation p.E433* 0.14 TCGA-CR-7377-01 12 56524381 56524381 G A ESYT1 Missense_Mutation p.V136M 0.13 deleterious(0) probably_damaging(0.987) TCGA-CR-7377-01 12 72091109 72091109 A G TMEM19 Silent p.T144T 0.17 TCGA-CR-7377-01 13 111299462 111299462 C T CARS2 Silent p.A393A 0.18 TCGA-CR-7377-01 13 111973249 111973249 G T TEX29 Silent p.V4V 0.04 TCGA-CR-7377-01 13 48985944 48985944 T C LPAR6 Missense_Mutation p.M206V 0.11 tolerated(0.32) benign(0.007) TCGA-CR-7377-01 13 73334727 73334727 G T DIS3 Silent p.I911I 0.17 TCGA-CR-7377-01 14 20917164 20917164 G A OSGEP Silent p.N172N 0.10 TCGA-CR-7377-01 14 24702464 24702464 C T GMPR2 Missense_Mutation p.P20L 0.18 deleterious_low_confidence(0) benign(0.212) TCGA-CR-7377-01 14 31348049 31348049 G A COCH Missense_Mutation p.R91Q 0.17 tolerated(0.35) benign(0.35) TCGA-CR-7377-01 14 79933641 79933641 C T NRXN3 Missense_Mutation p.R741W 0.18 deleterious(0) benign(0.252) TCGA-CR-7377-01 14 94089060 94089060 C T UNC79 Silent p.S1650S 0.13 TCGA-CR-7377-01 15 45353314 45353314 C G SORD Missense_Mutation p.F105L 0.11 tolerated(0.32) benign(0.002) TCGA-CR-7377-01 15 59373425 59373425 C T RNF111 Missense_Mutation p.P747S 0.10 tolerated(0.11) probably_damaging(0.999) TCGA-CR-7377-01 15 64463939 64463939 C T CSNK1G1 3'UTR 0.25 TCGA-CR-7377-01 15 72030124 72030124 G A THSD4 Missense_Mutation p.E562K 0.15 tolerated(0.48) benign(0.001) TCGA-CR-7377-01 15 84237394 84237394 G A SH3GL3 Missense_Mutation p.G101R 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7377-01 16 104045 104045 A G SNRNP25 Missense_Mutation p.D19G 0.20 tolerated(0.23) benign(0.191) TCGA-CR-7377-01 16 1842153 1842153 A G IGFALS Missense_Mutation p.V127A 0.09 deleterious(0) benign(0.217) TCGA-CR-7377-01 16 20994156 20994156 C T DNAH3 Silent p.S2582S 0.13 TCGA-CR-7377-01 16 30124099 30124099 G A GDPD3 Silent p.R66R 0.06 TCGA-CR-7377-01 16 30124100 30124100 C A GDPD3 Missense_Mutation p.R66L 0.07 deleterious(0.01) benign(0.332) TCGA-CR-7377-01 16 31383062 31383062 T C ITGAX Missense_Mutation p.L706P 0.08 deleterious(0) probably_damaging(0.995) TCGA-CR-7377-01 16 48226462 48226462 G A ABCC11 Missense_Mutation p.S892F 0.12 deleterious(0) possibly_damaging(0.744) TCGA-CR-7377-01 16 89789017 89789017 C T ZNF276 Missense_Mutation p.S95F 0.09 tolerated(0.45) benign(0.022) TCGA-CR-7377-01 17 48597049 48597049 G A MYCBPAP Missense_Mutation p.E316K 0.13 deleterious(0) probably_damaging(0.956) TCGA-CR-7377-01 17 49825158 49825158 G A CA10 Silent p.N100N 0.13 TCGA-CR-7377-01 17 59972740 59972740 A G INTS2 Missense_Mutation p.V508A 0.21 tolerated(1) benign(0.003) TCGA-CR-7377-01 17 60749025 60749025 T A MRC2 Missense_Mutation p.V378E 0.12 tolerated(0.32) benign(0.004) TCGA-CR-7377-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.10 TCGA-CR-7377-01 19 14247232 14247232 C T ASF1B Missense_Mutation p.E13K 0.20 deleterious(0.01) benign(0.232) TCGA-CR-7377-01 19 22363559 22363559 C G ZNF676 Missense_Mutation p.W320C 0.09 tolerated(0.21) probably_damaging(0.961) TCGA-CR-7377-01 19 22939799 22939799 G A ZNF99 3'Flank 0.13 TCGA-CR-7377-01 19 34984493 34984493 G T WTIP Nonsense_Mutation p.E333* 0.10 TCGA-CR-7377-01 19 36212436 36212436 C T KMT2B Silent p.N729N 0.09 TCGA-CR-7377-01 19 39336375 39336375 C A HNRNPL Missense_Mutation p.D209Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-CR-7377-01 19 44010937 44010937 C G ETHE1 3'UTR 0.09 TCGA-CR-7377-01 19 47226075 47226075 C T STRN4 Missense_Mutation p.G640D 0.15 tolerated(0.57) possibly_damaging(0.711) TCGA-CR-7377-01 19 6476960 6476960 C T DENND1C Missense_Mutation p.V196M 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7377-01 19 758519 758519 G T MISP Missense_Mutation p.V525F 0.21 tolerated(0.37) benign(0.022) TCGA-CR-7377-01 19 8438840 8438840 G A ANGPTL4 3'UTR 0.14 TCGA-CR-7377-01 19 9489013 9489013 G C ZNF177 Missense_Mutation p.W9S 0.07 tolerated(0.41) benign(0.178) TCGA-CR-7377-01 1 100572486 100572486 G A SASS6 Silent p.L464L 0.13 TCGA-CR-7377-01 1 109340774 109340774 A C STXBP3 Missense_Mutation p.Q455P 0.20 tolerated(0.14) benign(0.039) TCGA-CR-7377-01 1 114680442 114680442 C T SYT6 Missense_Mutation p.R164H 0.26 deleterious(0.03) possibly_damaging(0.791) TCGA-CR-7377-01 1 117492010 117492010 G A PTGFRN Silent p.S343S 0.11 TCGA-CR-7377-01 1 149858559 149858559 G C HIST2H2AC Missense_Mutation p.R12P 0.08 tolerated_low_confidence(0.07) unknown(0) TCGA-CR-7377-01 1 151824773 151824773 G A THEM5 Missense_Mutation p.R96W 0.12 deleterious(0) benign(0.394) TCGA-CR-7377-01 1 156843527 156843527 A G NTRK1 Missense_Mutation p.N318S 0.16 deleterious(0.03) probably_damaging(0.991) TCGA-CR-7377-01 1 182554927 182554927 G A RNASEL Nonsense_Mutation p.Q339* 0.11 TCGA-CR-7377-01 1 182812531 182812531 A G DHX9 Missense_Mutation p.I72V 0.08 tolerated(0.35) benign(0.001) TCGA-CR-7377-01 1 186136045 186136045 G A HMCN1 Missense_Mutation p.R5182Q 0.12 probably_damaging(0.986) TCGA-CR-7377-01 1 203276431 203276431 G A BTG2 Silent p.G114G 0.16 TCGA-CR-7377-01 1 208061164 208061164 A T CD34 Silent p.A359A 0.08 TCGA-CR-7377-01 1 231060684 231060684 C T TTC13 Missense_Mutation p.V542M 0.19 tolerated(0.43) benign(0.011) TCGA-CR-7377-01 1 248616314 248616314 C A OR2T2 Silent p.T72T 0.07 TCGA-CR-7377-01 1 248616457 248616457 C A OR2T2 Missense_Mutation p.A120D 0.08 deleterious(0) probably_damaging(0.998) TCGA-CR-7377-01 1 53680207 53680207 G A C1orf123 3'UTR 0.36 TCGA-CR-7377-01 20 25456758 25456758 C T NINL Missense_Mutation p.D1057N 0.23 tolerated(0.08) benign(0.311) TCGA-CR-7377-01 20 45129810 45129810 T G ZNF334 3'UTR 0.24 TCGA-CR-7377-01 20 45131154 45131154 C T ZNF334 Missense_Mutation p.R275H 0.11 tolerated(0.54) benign(0.028) TCGA-CR-7377-01 20 57767313 57767313 C T ZNF831 Silent p.S413S 0.19 TCGA-CR-7377-01 21 32253869 32253869 G T KRTAP11-1 5'UTR 0.21 TCGA-CR-7377-01 22 17072462 17072462 T A CCT8L2 Missense_Mutation p.S327C 0.11 tolerated(0.37) possibly_damaging(0.456) TCGA-CR-7377-01 22 21348279 21348279 A G LZTR1 Missense_Mutation p.I474V 0.16 deleterious(0.02) probably_damaging(0.934) TCGA-CR-7377-01 22 29754833 29754833 T A AP1B1 Missense_Mutation p.Y136F 0.21 deleterious(0) probably_damaging(0.997) TCGA-CR-7377-01 22 43830954 43830954 G A MPPED1 Missense_Mutation p.M75I 0.09 tolerated(0.24) benign(0.037) TCGA-CR-7377-01 22 50720046 50720046 C T PLXNB2 Silent p.P1157P 0.13 TCGA-CR-7377-01 2 108487680 108487680 G A RGPD4 Missense_Mutation p.V1074I 0.11 tolerated(0.62) benign(0.001) TCGA-CR-7377-01 2 108924864 108924864 G A SULT1C2 Missense_Mutation p.E290K 0.09 tolerated(0.32) benign(0.008) TCGA-CR-7377-01 2 128029027 128029027 T A ERCC3 Silent p.V610V 0.06 TCGA-CR-7377-01 2 228882145 228882145 C G SPHKAP Missense_Mutation p.R1142T 0.16 deleterious(0) probably_damaging(0.999) TCGA-CR-7377-01 2 233675989 233675989 A C GIGYF2 Missense_Mutation p.K666T 0.10 probably_damaging(0.997) TCGA-CR-7377-01 2 239040108 239040108 G A ESPNL Missense_Mutation p.G918D 0.07 deleterious(0.01) probably_damaging(0.97) TCGA-CR-7377-01 2 25754408 25754408 G C DTNB Missense_Mutation p.T312R 0.13 tolerated(0.07) benign(0.088) TCGA-CR-7377-01 2 39251221 39251221 T A SOS1 Missense_Mutation p.T378S 0.08 tolerated(0.87) benign(0.057) TCGA-CR-7377-01 2 40397431 40397431 G A SLC8A1 Silent p.I676I 0.12 TCGA-CR-7377-01 3 100469363 100469363 C T ABI3BP Silent p.G1068G 0.07 TCGA-CR-7377-01 3 108746688 108746688 G A MORC1 Silent p.S538S 0.18 TCGA-CR-7377-01 3 109023367 109023367 G T DPPA2 Missense_Mutation p.S270Y 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-CR-7377-01 3 109047778 109047778 C T DPPA4 Silent p.P279P 0.22 TCGA-CR-7377-01 3 121414052 121414052 G C GOLGB1 Missense_Mutation p.S1773C 0.08 probably_damaging(0.919) TCGA-CR-7377-01 3 134076477 134076477 G A AMOTL2 3'UTR 0.22 TCGA-CR-7377-01 3 155314050 155314050 C T PLCH1 Missense_Mutation p.R54Q 0.22 deleterious(0) benign(0.135) TCGA-CR-7377-01 3 164760860 164760860 G A SI Missense_Mutation p.S664F 0.15 deleterious(0) benign(0.221) TCGA-CR-7377-01 3 3887531 3887531 G C LRRN1 Silent p.P402P 0.24 TCGA-CR-7377-01 3 70008500 70008500 C T MITF Missense_Mutation p.R364C 0.19 deleterious(0) probably_damaging(0.998) TCGA-CR-7377-01 3 97868271 97868271 C T OR5H14 Silent p.L14L 0.09 TCGA-CR-7377-01 4 146807157 146807157 C T ZNF827 Missense_Mutation p.V474I 0.12 tolerated(0.19) benign(0.003) TCGA-CR-7377-01 4 162306902 162306902 G A FSTL5 Silent p.A847A 0.11 TCGA-CR-7377-01 4 185681655 185681655 C T ACSL1 Splice_Site p.X547_splice 0.12 TCGA-CR-7377-01 4 24854761 24854761 T C CCDC149 Missense_Mutation p.N102S 0.16 tolerated(0.11) benign(0.382) TCGA-CR-7377-01 5 140603276 140603276 G A PCDHB14 Missense_Mutation p.V67M 0.11 deleterious_low_confidence(0.02) benign(0.101) TCGA-CR-7377-01 5 145719962 145719962 C T POU4F3 Silent p.N324N 0.08 TCGA-CR-7377-01 5 54565331 54565331 C T DHX29 Silent p.P1068P 0.15 TCGA-CR-7377-01 5 61779883 61779883 C G IPO11 Missense_Mutation p.F396L 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-CR-7377-01 6 100838427 100838427 T C SIM1 Missense_Mutation p.Q704R 0.11 deleterious_low_confidence(0.02) benign(0.15) TCGA-CR-7377-01 6 100901656 100901656 C T SIM1 Silent p.L80L 0.13 TCGA-CR-7377-01 6 130762312 130762312 G A TMEM200A Missense_Mutation p.D249N 0.11 deleterious(0.04) possibly_damaging(0.563) TCGA-CR-7377-01 6 134638658 134638658 T C SGK1 5'UTR 0.18 TCGA-CR-7377-01 6 135778701 135778701 A G AHI1 Missense_Mutation p.I361T 0.19 deleterious(0) probably_damaging(0.958) TCGA-CR-7377-01 6 24564520 24564520 G C KIAA0319 Missense_Mutation p.L781V 0.14 deleterious(0) possibly_damaging(0.764) TCGA-CR-7377-01 6 26184294 26184294 A G HIST1H2BE Missense_Mutation p.T91A 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.708) TCGA-CR-7377-01 6 30140093 30140093 G A TRIM15 Nonsense_Mutation p.W455* 0.15 TCGA-CR-7377-01 6 38649810 38649810 T C GLO1 Silent p.K148K 0.10 TCGA-CR-7377-01 6 43322834 43322834 T C ZNF318 Silent p.P746P 0.16 TCGA-CR-7377-01 6 49704206 49704206 A G CRISP3 Silent p.T52T 0.10 TCGA-CR-7377-01 6 55925556 55925556 C T COL21A1 Missense_Mutation p.C797Y 0.09 deleterious(0) probably_damaging(0.996) TCGA-CR-7377-01 6 71232224 71232224 A G FAM135A Silent p.R346R 0.09 TCGA-CR-7377-01 7 100358081 100358081 G A ZAN Missense_Mutation p.R1255Q 0.13 unknown(0) TCGA-CR-7377-01 7 12258148 12258148 G A TMEM106B Splice_Site p.X94_splice 0.24 TCGA-CR-7377-01 7 142423485 142423485 C T TRBV27 Silent p.N47N 0.09 TCGA-CR-7377-01 7 16640498 16640498 T C ANKMY2 Missense_Mutation p.K405R 0.21 tolerated_low_confidence(0.05) benign(0.009) TCGA-CR-7377-01 7 17833621 17833621 T C SNX13 3'UTR 0.09 TCGA-CR-7377-01 7 37264509 37264509 C T ELMO1 Missense_Mutation p.G226S 0.25 tolerated(0.5) possibly_damaging(0.907) TCGA-CR-7377-01 7 43581558 43581558 A G HECW1 Silent p.L1403L 0.17 TCGA-CR-7377-01 7 87913347 87913347 C T STEAP4 Missense_Mutation p.A80T 0.10 deleterious(0.04) benign(0.167) TCGA-CR-7377-01 7 88965755 88965755 C A ZNF804B Missense_Mutation p.D1153E 0.09 tolerated(0.73) benign(0.214) TCGA-CR-7377-01 7 99699320 99699320 C G AP4M1 5'UTR 0.10 TCGA-CR-7377-01 8 4494972 4494972 C G CSMD1 Missense_Mutation p.G65A 0.15 probably_damaging(0.999) TCGA-CR-7377-01 8 72938196 72938196 A G TRPA1 Missense_Mutation p.F1017S 0.10 tolerated(0.41) benign(0.003) TCGA-CR-7377-01 8 87645051 87645051 A C CNGB3 Missense_Mutation p.L417V 0.33 tolerated(0.33) benign(0.06) TCGA-CR-7377-01 9 103070951 103070951 C T TEX10 Missense_Mutation p.V766I 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-CR-7377-01 9 103213277 103213277 A G MSANTD3 3'UTR 0.17 TCGA-CR-7377-01 9 114305147 114305147 C T ZNF483 Silent p.F644F 0.14 TCGA-CR-7377-01 9 126137517 126137517 C T CRB2 Silent p.P1176P 0.08 TCGA-CR-7377-01 9 139392011 139392011 C T NOTCH1 Splice_Site p.X2061_splice 0.15 TCGA-CR-7377-01 9 139400000 139400000 C A NOTCH1 Nonsense_Mutation p.E1450* 0.15 TCGA-CR-7377-01 9 35812184 35812184 A G SPAG8 5'UTR 0.06 TCGA-CR-7377-01 9 99522337 99522337 T C ZNF510 Missense_Mutation p.I259V 0.11 tolerated(0.33) benign(0.035) TCGA-CR-7377-01 X 109696314 109696314 G A RGAG1 Missense_Mutation p.M823I 0.25 tolerated(0.09) benign(0.037) TCGA-CR-7377-01 X 138886713 138886713 C A ATP11C Missense_Mutation p.D161Y 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7377-01 X 144904539 144904539 C T SLITRK2 Missense_Mutation p.A199V 0.21 tolerated(0.41) benign(0.074) TCGA-CR-7377-01 X 55042039 55042039 A C ALAS2 Missense_Mutation p.H380Q 0.20 tolerated(0.1) benign(0.08) TCGA-CR-7377-01 X 70604857 70604857 A G TAF1 Silent p.T748T 0.23 TCGA-CR-7379-01 10 103558656 103558656 C T MGEA5 Nonsense_Mutation p.W584* 0.10 TCGA-CR-7379-01 10 105882813 105882813 C T SFR1 Missense_Mutation p.S35L 0.11 tolerated(0.1) benign(0.006) TCGA-CR-7379-01 10 108389086 108389086 C T SORCS1 Missense_Mutation p.V846I 0.16 tolerated(0.1) benign(0.281) TCGA-CR-7379-01 10 116593011 116593011 C T FAM160B1 Silent p.T48T 0.10 TCGA-CR-7379-01 10 129913712 129913712 T C MKI67 Silent p.G320G 0.17 TCGA-CR-7379-01 10 15255111 15255111 C T FAM171A1 Missense_Mutation p.G826S 0.15 tolerated(0.34) benign(0.033) TCGA-CR-7379-01 10 48388751 48388751 C T RBP3 Silent p.V709V 0.23 TCGA-CR-7379-01 10 88459211 88459211 C T LDB3 Intron 0.21 TCGA-CR-7379-01 10 95720289 95720289 T A PIPSL RNA 0.16 TCGA-CR-7379-01 10 98355175 98355175 C T PIK3AP1 3'UTR 0.40 TCGA-CR-7379-01 10 98743187 98743187 T A C10orf12 Silent p.A680A 0.16 TCGA-CR-7379-01 10 98744511 98744511 C T C10orf12 Missense_Mutation p.P1122S 0.12 tolerated(0.19) benign(0.04) TCGA-CR-7379-01 11 108380962 108380962 G A EXPH5 Silent p.L1758L 0.16 TCGA-CR-7379-01 11 125848248 125848248 T A CDON Missense_Mutation p.I1103F 0.19 deleterious(0.01) benign(0.067) TCGA-CR-7379-01 11 20409618 20409618 G A PRMT3 Missense_Mutation p.G28R 0.11 possibly_damaging(0.472) TCGA-CR-7379-01 11 47298327 47298327 G C MADD Silent p.V336V 0.11 TCGA-CR-7379-01 11 5509984 5509984 C T OR52D1 Silent p.F16F 0.21 TCGA-CR-7379-01 11 55798090 55798090 T G OR5AS1 Missense_Mutation p.L66V 0.12 deleterious(0) probably_damaging(0.996) TCGA-CR-7379-01 11 59863040 59863040 G A MS4A2 Missense_Mutation p.D216N 0.15 deleterious(0) probably_damaging(0.958) TCGA-CR-7379-01 11 6452483 6452483 C T HPX Silent p.P449P 0.08 TCGA-CR-7379-01 12 11082884 11082884 C T PRH2 Silent p.D27D 0.14 TCGA-CR-7379-01 12 112506764 112506764 T A NAA25 Nonsense_Mutation p.K357* 0.18 TCGA-CR-7379-01 12 113830708 113830709 TT - SDS 3'UTR 0.20 TCGA-CR-7379-01 12 116434432 116434432 T C MED13L Missense_Mutation p.M949V 0.20 tolerated(0.09) unknown(0) TCGA-CR-7379-01 12 118406030 118406030 C A KSR2 Nonsense_Mutation p.E11* 0.06 TCGA-CR-7379-01 12 124862849 124862849 C A NCOR2 Nonsense_Mutation p.E701* 0.20 TCGA-CR-7379-01 12 27841969 27841969 G A PPFIBP1 Missense_Mutation p.V846I 0.16 deleterious(0.04) probably_damaging(0.919) TCGA-CR-7379-01 12 32735513 32735513 G A FGD4 Intron 0.31 TCGA-CR-7379-01 12 49447796 49447796 A G KMT2D Missense_Mutation p.L213P 0.18 unknown(0) TCGA-CR-7379-01 12 54110137 54110137 C T CALCOCO1 Silent p.K304K 0.28 TCGA-CR-7379-01 12 58000719 58000719 G A DTX3 Missense_Mutation p.V25M 0.30 deleterious(0) benign(0.354) TCGA-CR-7379-01 12 81675072 81675072 A G PPFIA2 Missense_Mutation p.L1059P 0.13 deleterious(0) probably_damaging(1) TCGA-CR-7379-01 12 91449289 91449289 C T KERA Missense_Mutation p.R257K 0.22 tolerated(0.11) benign(0.001) TCGA-CR-7379-01 13 25275010 25275010 C T ATP12A Missense_Mutation p.R617W 0.16 deleterious(0.02) possibly_damaging(0.608) TCGA-CR-7379-01 13 49027134 49027134 A T RB1 Silent p.S567S 0.08 TCGA-CR-7379-01 13 96212417 96212417 C G CLDN10 Missense_Mutation p.I84M 0.07 deleterious(0) probably_damaging(0.909) TCGA-CR-7379-01 13 98043798 98043798 C G MBNL2 3'UTR 0.11 TCGA-CR-7379-01 14 19566010 19566010 A T POTEG Splice_Site p.X352_splice 0.09 TCGA-CR-7379-01 14 29237757 29237757 G A FOXG1 Silent p.P424P 0.24 TCGA-CR-7379-01 14 30046528 30046528 G T PRKD1 Silent p.I885I 0.25 TCGA-CR-7379-01 14 31762629 31762629 C T RP11-596D21.1 Intron 0.25 TCGA-CR-7379-01 14 47120482 47120482 C T RPL10L Missense_Mutation p.R153H 0.13 tolerated(0.18) benign(0.026) TCGA-CR-7379-01 14 55509833 55509833 A G SOCS4 Missense_Mutation p.D25G 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7379-01 14 64989074 64989074 C T ZBTB1 Silent p.Y284Y 0.19 TCGA-CR-7379-01 14 67843302 67843302 A C EIF2S1 Silent p.A156A 0.20 TCGA-CR-7379-01 15 25444536 25444536 G A SNORD115-14 3'Flank 0.12 TCGA-CR-7379-01 15 43503700 43503700 G A EPB42 Missense_Mutation p.R185C 0.33 tolerated(0.06) possibly_damaging(0.534) TCGA-CR-7379-01 15 48760184 48760184 C G FBN1 Silent p.L1566L 0.20 TCGA-CR-7379-01 15 51031995 51031995 A G SPPL2A Silent p.D205D 0.21 TCGA-CR-7379-01 15 83932492 83932492 G A BNC1 Missense_Mutation p.T504M 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7379-01 15 84690198 84690198 C G ADAMTSL3 Missense_Mutation p.S1437C 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7379-01 15 91346818 91346818 C T BLM Silent p.A1142A 0.25 TCGA-CR-7379-01 15 91769696 91769696 C T SV2B Missense_Mutation p.P68L 0.30 tolerated(0.37) benign(0.006) TCGA-CR-7379-01 16 19047109 19047109 G A TMC7 Silent p.A323A 0.32 TCGA-CR-7379-01 16 20439133 20439133 C A ACSM5 Silent p.T315T 0.27 TCGA-CR-7379-01 16 3646278 3646278 C T SLX4 Silent p.P600P 0.33 TCGA-CR-7379-01 16 49764836 49764836 C T ZNF423 Silent p.A41A 0.14 TCGA-CR-7379-01 16 71163606 71163606 C G HYDIN Missense_Mutation p.Q388H 0.11 probably_damaging(0.977) TCGA-CR-7379-01 16 731778 731778 C T JMJD8 3'UTR 0.23 TCGA-CR-7379-01 16 81134661 81134661 G A GCSH 5'Flank 0.39 TCGA-CR-7379-01 17 35880712 35880712 G A SYNRG Missense_Mutation p.R1236W 0.23 deleterious(0) probably_damaging(0.999) TCGA-CR-7379-01 17 41142894 41142894 C T RUNDC1 Missense_Mutation p.R335W 0.22 deleterious(0) possibly_damaging(0.847) TCGA-CR-7379-01 17 44110824 44110824 C T KANSL1 Nonsense_Mutation p.W890* 0.12 TCGA-CR-7379-01 17 45361893 45361893 C - ITGB3 Frame_Shift_Del p.M150* 0.25 TCGA-CR-7379-01 17 4647997 4647997 C G ZMYND15 Silent p.G587G 0.09 TCGA-CR-7379-01 17 74386975 74386975 C A UBE2O 3'UTR 0.29 TCGA-CR-7379-01 17 7578522 7578522 T A TP53 Missense_Mutation p.Q136H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-7379-01 17 79658578 79658578 G A HGS Silent p.E213E 0.27 TCGA-CR-7379-01 17 8132760 8132760 G A CTC1 Missense_Mutation p.P1006S 0.14 tolerated(0.17) benign(0.065) TCGA-CR-7379-01 18 14537869 14537869 G T POTEC Silent p.V247V 0.32 TCGA-CR-7379-01 18 23845146 23845146 T A TAF4B Missense_Mutation p.I119N 0.12 deleterious(0) possibly_damaging(0.713) TCGA-CR-7379-01 18 30350279 30350279 C T KLHL14 Silent p.P92P 0.22 TCGA-CR-7379-01 18 67425109 67425109 G T DOK6 Missense_Mutation p.G286C 0.09 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-CR-7379-01 19 10107328 10107328 C T COL5A3 Missense_Mutation p.G434E 0.28 unknown(0) TCGA-CR-7379-01 19 10129435 10129435 G T RDH8 Silent p.G117G 0.14 TCGA-CR-7379-01 19 1080465 1080465 G A HMHA1 Missense_Mutation p.G627R 0.17 tolerated(0.14) benign(0.078) TCGA-CR-7379-01 19 12763060 12763060 G A MAN2B1 Silent p.N651N 0.19 TCGA-CR-7379-01 19 19790618 19790618 A C ZNF101 Silent p.R274R 0.10 TCGA-CR-7379-01 19 22941431 22941431 C A ZNF99 Missense_Mutation p.C427F 0.31 deleterious(0) probably_damaging(1) TCGA-CR-7379-01 19 36572390 36572390 C T WDR62 Missense_Mutation p.T430I 0.11 deleterious(0) probably_damaging(0.997) TCGA-CR-7379-01 19 45556084 45556084 A G CLASRP Missense_Mutation p.D78G 0.26 deleterious(0) probably_damaging(1) TCGA-CR-7379-01 19 54666830 54666830 G A TMC4 Missense_Mutation p.T453I 0.34 deleterious(0) possibly_damaging(0.851) TCGA-CR-7379-01 19 57648260 57648260 C T ZIM3 Silent p.V74V 0.14 TCGA-CR-7379-01 19 9085508 9085508 G A MUC16 Nonsense_Mutation p.Q2103* 0.09 TCGA-CR-7379-01 1 107691215 107691215 G A NTNG1 5'UTR 0.47 TCGA-CR-7379-01 1 112303130 112303130 G A DDX20 Silent p.L200L 0.46 TCGA-CR-7379-01 1 12640432 12640432 C T DHRS3 Intron 0.57 TCGA-CR-7379-01 1 150445676 150445676 C T RPRD2 Missense_Mutation p.R1418W 0.61 deleterious_low_confidence(0.02) benign(0.001) TCGA-CR-7379-01 1 169434982 169434982 G T SLC19A2 3'UTR 0.40 TCGA-CR-7379-01 1 169580906 169580906 C T SELP Missense_Mutation p.C324Y 0.47 deleterious(0.02) probably_damaging(0.992) TCGA-CR-7379-01 1 171753042 171753042 A C METTL13 Missense_Mutation p.T106P 0.56 deleterious(0.03) probably_damaging(0.932) TCGA-CR-7379-01 1 217856693 217856693 G T SPATA17 Missense_Mutation p.D129Y 0.50 deleterious(0) possibly_damaging(0.707) TCGA-CR-7379-01 1 27676942 27676942 G A SYTL1 Missense_Mutation p.R324Q 0.44 deleterious(0.01) probably_damaging(0.934) TCGA-CR-7379-01 1 29650167 29650167 C T PTPRU Missense_Mutation p.R1337W 0.52 deleterious(0) probably_damaging(0.913) TCGA-CR-7379-01 1 44085815 44085815 G A PTPRF Missense_Mutation p.E1721K 0.53 deleterious(0) probably_damaging(0.999) TCGA-CR-7379-01 20 36992665 36992665 A T LBP Missense_Mutation p.Y230F 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-CR-7379-01 20 42825851 42825851 C T OSER1 Silent p.S240S 0.07 TCGA-CR-7379-01 20 58513978 58513978 G A PPP1R3D 3'UTR 0.50 TCGA-CR-7379-01 22 36900343 36900343 G A FOXRED2 Missense_Mutation p.T284M 0.34 tolerated(0.06) possibly_damaging(0.513) TCGA-CR-7379-01 22 39529912 39529912 C A CBX7 Missense_Mutation p.R247L 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-CR-7379-01 22 40815260 40815260 A G MKL1 Silent p.P394P 0.27 TCGA-CR-7379-01 22 50439548 50439548 C T IL17REL Silent p.A24A 0.33 TCGA-CR-7379-01 22 50943500 50943500 A G LMF2 Missense_Mutation p.F414L 0.20 deleterious(0) probably_damaging(0.998) TCGA-CR-7379-01 2 113949982 113949982 T A PSD4 Missense_Mutation p.S552T 0.36 tolerated(0.45) benign(0.104) TCGA-CR-7379-01 2 179472661 179472661 C T TTN Missense_Mutation p.R17618H 0.24 TCGA-CR-7379-01 2 179639678 179639678 C T TTN Missense_Mutation p.V2254I 0.19 TCGA-CR-7379-01 2 202131228 202131228 C G CASP8 Missense_Mutation p.L66V 0.26 deleterious(0) probably_damaging(1) TCGA-CR-7379-01 2 202625656 202625656 T A ALS2 Missense_Mutation p.D354V 0.18 tolerated(0.1) benign(0.036) TCGA-CR-7379-01 2 212488657 212488657 G A ERBB4 Missense_Mutation p.T731M 0.18 deleterious(0.01) possibly_damaging(0.885) TCGA-CR-7379-01 2 212568852 212568852 G A ERBB4 Silent p.T422T 0.21 TCGA-CR-7379-01 2 237172797 237172797 G A ASB18 Silent p.T64T 0.10 TCGA-CR-7379-01 3 108072558 108072558 G A HHLA2 Missense_Mutation p.G117R 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7379-01 3 151161398 151161398 C A IGSF10 Missense_Mutation p.W1779C 0.15 deleterious(0) probably_damaging(1) TCGA-CR-7379-01 3 4355272 4355272 C G SETMAR Missense_Mutation p.L283V 0.23 tolerated_low_confidence(0.1) benign(0.02) TCGA-CR-7379-01 3 57898145 57898145 C T SLMAP Silent p.L545L 0.16 TCGA-CR-7379-01 3 88188748 88188750 TAC - ZNF654 In_Frame_Del p.T97del 0.26 TCGA-CR-7379-01 3 97868899 97868899 A C OR5H14 Missense_Mutation p.T224P 0.07 deleterious(0) probably_damaging(0.918) TCGA-CR-7379-01 3 97983841 97983841 T C OR5H6 Missense_Mutation p.L238P 0.10 deleterious(0) probably_damaging(0.992) TCGA-CR-7379-01 4 107252981 107252981 G A AIMP1 Missense_Mutation p.G206R 0.13 deleterious(0) probably_damaging(0.996) TCGA-CR-7379-01 4 126241670 126241670 C T FAT4 Silent p.N1368N 0.21 TCGA-CR-7379-01 4 153247226 153247226 A G FBXW7 Missense_Mutation p.W526R 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7379-01 4 153259045 153259046 - TGAGT FBXW7 Frame_Shift_Ins p.I257Nfs*11 0.32 TCGA-CR-7379-01 4 156752996 156752996 A T ASIC5 Missense_Mutation p.V436E 0.18 deleterious(0.01) possibly_damaging(0.61) TCGA-CR-7379-01 4 177081214 177081214 G A WDR17 Silent p.V889V 0.20 TCGA-CR-7379-01 4 187628208 187628208 G C FAT1 Missense_Mutation p.P925R 0.13 probably_damaging(1) TCGA-CR-7379-01 4 4864759 4864759 G T MSX1 Silent p.A267A 0.21 TCGA-CR-7379-01 5 156668657 156668657 C T ITK Silent p.G329G 0.25 TCGA-CR-7379-01 5 179740899 179740899 C T GFPT2 Missense_Mutation p.V447I 0.21 tolerated(1) benign(0.004) TCGA-CR-7379-01 5 23522511 23522511 C A PRDM9 Missense_Mutation p.L203I 0.23 deleterious(0) benign(0.063) TCGA-CR-7379-01 5 76932942 76932942 G A OTP Missense_Mutation p.P51S 0.44 tolerated(0.65) benign(0) TCGA-CR-7379-01 6 131917269 131917269 G A MED23 Missense_Mutation p.A938V 0.27 tolerated(0.38) possibly_damaging(0.827) TCGA-CR-7379-01 6 40399668 40399668 G A LRFN2 Silent p.R395R 0.23 TCGA-CR-7379-01 6 64422707 64422707 G A PHF3 Silent p.E1741E 0.19 TCGA-CR-7379-01 7 143417084 143417084 G T FAM115C Missense_Mutation p.C311F 0.21 tolerated(0.71) benign(0.216) TCGA-CR-7379-01 7 156803085 156803085 G A MNX1 5'UTR 0.44 TCGA-CR-7379-01 7 17349613 17349613 G C AHR Missense_Mutation p.R40T 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7379-01 7 20199733 20199733 A G MACC1 Missense_Mutation p.L84P 0.29 tolerated(0.16) possibly_damaging(0.772) TCGA-CR-7379-01 7 31378780 31378780 C G NEUROD6 Missense_Mutation p.E35Q 0.23 tolerated(0.3) benign(0.01) TCGA-CR-7379-01 7 48390266 48390266 C T ABCA13 Missense_Mutation p.H3411Y 0.37 probably_damaging(0.937) TCGA-CR-7379-01 7 50121443 50121443 C G ZPBP Silent p.T87T 0.38 TCGA-CR-7379-01 8 143999224 143999224 C T CYP11B2 Silent p.V11V 0.18 TCGA-CR-7379-01 8 144811234 144811234 G T FAM83H Missense_Mutation p.P214T 0.21 tolerated(0.23) probably_damaging(1) TCGA-CR-7379-01 8 145012832 145012832 G T PLEC Silent p.T184T 0.16 TCGA-CR-7379-01 8 51571204 51571204 T C SNTG1 Missense_Mutation p.I340T 0.45 tolerated(0.4) benign(0.05) TCGA-CR-7379-01 8 70476367 70476367 C T SULF1 Nonsense_Mutation p.Q53* 0.19 TCGA-CR-7379-01 8 71520380 71520380 C T TRAM1 Missense_Mutation p.V19I 0.19 tolerated(0.71) benign(0.001) TCGA-CR-7379-01 8 81400004 81400004 A G ZBTB10 Missense_Mutation p.E320G 0.05 deleterious_low_confidence(0) benign(0.01) TCGA-CR-7379-01 8 91929759 91929759 A T NECAB1 Nonsense_Mutation p.R133* 0.32 TCGA-CR-7379-01 8 91929771 91929771 A T NECAB1 Nonsense_Mutation p.K137* 0.33 TCGA-CR-7379-01 8 95862216 95862216 G C INTS8 Missense_Mutation p.L468F 0.10 tolerated(0.12) possibly_damaging(0.871) TCGA-CR-7379-01 9 131367378 131367378 G C SPTAN1 Missense_Mutation p.G1262A 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-CR-7379-01 9 139396213 139396213 A T NOTCH1 Missense_Mutation p.N1875K 0.18 deleterious(0) benign(0.184) TCGA-CR-7379-01 9 15199906 15199906 G A TTC39B Silent p.N259N 0.14 TCGA-CR-7379-01 9 21968242 21968242 C T CDKN2A Splice_Site 0.42 TCGA-CR-7379-01 9 32407405 32407405 C T ACO1 Missense_Mutation p.R82C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CR-7379-01 9 35658694 35658694 C G CCDC107 Silent p.V76V 0.25 TCGA-CR-7379-01 9 6328941 6328941 G A TPD52L3 Missense_Mutation p.A116T 0.13 tolerated(0.27) benign(0.09) TCGA-CR-7379-01 9 71098810 71098810 C T PGM5 Missense_Mutation p.T442M 0.21 deleterious(0.03) benign(0.026) TCGA-CR-7379-01 9 91657049 91657049 T C SHC3 Missense_Mutation p.T418A 0.25 tolerated(0.77) benign(0) TCGA-CR-7379-01 X 100879979 100879979 G A ARMCX3 Missense_Mutation p.A4T 0.15 tolerated(0.47) benign(0.073) TCGA-CR-7379-01 X 101095787 101095787 G C NXF5 Silent p.V187V 0.08 TCGA-CR-7379-01 X 102337969 102337969 C T NXF3 Silent p.Q218Q 0.09 TCGA-CR-7379-01 X 114141460 114141460 C T HTR2C Missense_Mutation p.R287C 0.12 tolerated(0.08) benign(0.001) TCGA-CR-7379-01 X 114883894 114883894 G A PLS3 3'UTR 0.13 TCGA-CR-7379-01 X 123518065 123518065 C G TENM1 Missense_Mutation p.G2239A 0.10 deleterious(0.03) probably_damaging(0.925) TCGA-CR-7379-01 X 124097658 124097658 C A TENM1 5'UTR 0.17 TCGA-CR-7379-01 X 14861944 14861944 A C FANCB Silent p.S775S 0.16 TCGA-CR-7379-01 X 151092703 151092703 C G MAGEA4 Silent p.G189G 0.08 TCGA-CR-7379-01 X 154013398 154013398 C T MPP1 Missense_Mutation p.E238K 0.13 tolerated(0.58) benign(0.109) TCGA-CR-7379-01 X 154159320 154159320 T G F8 Silent p.A915A 0.05 TCGA-CR-7379-01 X 37431412 37431412 A T LANCL3 Nonsense_Mutation p.K97* 0.24 TCGA-CR-7379-01 X 37431414 37431414 G A LANCL3 Silent p.K97K 0.24 TCGA-CR-7379-01 X 48564736 48564736 C A SUV39H1 Nonsense_Mutation p.Y303* 0.17 TCGA-CR-7379-01 X 55650595 55650595 G A FOXR2 Missense_Mutation p.D151N 0.14 tolerated(0.64) benign(0.001) TCGA-CR-7379-01 X 65253341 65253341 C A VSIG4 Missense_Mutation p.K129N 0.18 tolerated(0.06) benign(0.355) TCGA-CR-7379-01 X 70461117 70461117 G A ZMYM3 Missense_Mutation p.R1294C 0.11 deleterious(0) possibly_damaging(0.786) TCGA-CR-7379-01 X 71425660 71425660 G C ERCC6L Missense_Mutation p.P986R 0.35 tolerated(0.31) benign(0.024) TCGA-CR-7379-01 X 94318214 94318214 C G MIR548M RNA 0.16 TCGA-CR-7380-01 10 108389025 108389025 C T SORCS1 Missense_Mutation p.R866H 0.27 deleterious(0) probably_damaging(0.982) TCGA-CR-7380-01 10 33217097 33217097 C T ITGB1 Missense_Mutation p.D158N 0.22 tolerated(0.07) possibly_damaging(0.537) TCGA-CR-7380-01 10 71258083 71258083 G A TSPAN15 Silent p.Q167Q 0.40 TCGA-CR-7380-01 11 101818768 101818768 G A KIAA1377 Missense_Mutation p.R134Q 0.39 tolerated(1) benign(0.001) TCGA-CR-7380-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.77 deleterious(0) probably_damaging(0.999) TCGA-CR-7380-01 11 11394162 11394163 - T GALNT18 Frame_Shift_Ins p.I331Nfs*54 0.21 TCGA-CR-7380-01 11 64337279 64337279 C T SLC22A11 Missense_Mutation p.P513L 0.25 deleterious(0) possibly_damaging(0.841) TCGA-CR-7380-01 12 101551086 101551086 T C SLC5A8 Missense_Mutation p.S602G 0.09 tolerated(0.11) benign(0.002) TCGA-CR-7380-01 12 111785858 111785858 C T CUX2 Missense_Mutation p.S1397L 0.34 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-CR-7380-01 12 118829084 118829084 G A SUDS3 Missense_Mutation p.G172R 0.13 deleterious(0) probably_damaging(0.955) TCGA-CR-7380-01 12 123340573 123340573 A G HIP1R Missense_Mutation p.E392G 0.50 deleterious(0) probably_damaging(0.985) TCGA-CR-7380-01 12 55641374 55641375 CA - OR6C74 Frame_Shift_Del p.T102Yfs*7 0.15 TCGA-CR-7380-01 12 94965489 94965489 G A TMCC3 Missense_Mutation p.R386C 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7380-01 13 109661380 109661380 T C MYO16 Silent p.L838L 0.26 TCGA-CR-7380-01 13 32805362 32805362 C A FRY Missense_Mutation p.Q1818K 0.28 tolerated(0.28) benign(0.281) TCGA-CR-7380-01 13 37439827 37439827 G A SMAD9 Nonsense_Mutation p.R284* 0.25 TCGA-CR-7380-01 13 43180950 43180950 C T TNFSF11 Missense_Mutation p.R284W 0.19 deleterious(0) probably_damaging(0.969) TCGA-CR-7380-01 13 73468075 73468076 - A PIBF1 Frame_Shift_Ins p.L495Ifs*10 0.13 TCGA-CR-7380-01 14 23517613 23517613 C T CDH24 Missense_Mutation p.R679Q 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7380-01 14 94849078 94849078 G A SERPINA1 Missense_Mutation p.A166V 0.45 tolerated(0.41) benign(0.127) TCGA-CR-7380-01 15 25420125 25420125 A C SNORD115-3 RNA 0.32 TCGA-CR-7380-01 15 41228839 41228839 G A DLL4 Missense_Mutation p.V552M 0.32 tolerated(0.05) benign(0.146) TCGA-CR-7380-01 15 63958585 63958585 G A HERC1 Missense_Mutation p.R2765W 0.25 probably_damaging(0.997) TCGA-CR-7380-01 16 20371929 20371929 C T PDILT Silent p.L489L 0.29 TCGA-CR-7380-01 16 3100422 3100422 A G MMP25 Missense_Mutation p.H179R 0.28 deleterious(0) probably_damaging(0.996) TCGA-CR-7380-01 16 396963 396963 G A AXIN1 Silent p.P21P 0.30 TCGA-CR-7380-01 16 66651242 66651242 C A CMTM4 Missense_Mutation p.V215L 0.36 tolerated_low_confidence(0.21) benign(0) TCGA-CR-7380-01 17 18198059 18198059 G A TOP3A Missense_Mutation p.A344V 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-CR-7380-01 17 37331582 37331584 TCT - CACNB1 In_Frame_Del p.E553del 0.21 TCGA-CR-7380-01 17 39643859 39643859 C T KRT36 Missense_Mutation p.R277H 0.25 tolerated(0.13) benign(0.071) TCGA-CR-7380-01 17 41019741 41019741 C T AOC4P RNA 0.25 TCGA-CR-7380-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.53 deleterious(0) probably_damaging(0.997) TCGA-CR-7380-01 17 79220126 79220126 C T SLC38A10 Missense_Mutation p.A864T 0.24 tolerated(0.15) benign(0.036) TCGA-CR-7380-01 17 7951079 7951079 G A ALOX15B Nonsense_Mutation p.W566* 0.24 TCGA-CR-7380-01 19 11470367 11470367 G A DKFZP761J1410 Missense_Mutation p.A51T 0.20 deleterious(0.02) benign(0.388) TCGA-CR-7380-01 19 14069867 14069867 T C DCAF15 Silent p.S265S 0.41 TCGA-CR-7380-01 19 15284919 15284919 C T NOTCH3 Missense_Mutation p.E1566K 0.24 tolerated(0.64) benign(0.003) TCGA-CR-7380-01 19 45004467 45004467 G T ZNF180 5'UTR 0.33 TCGA-CR-7380-01 19 5151410 5151410 G A KDM4B Missense_Mutation p.R1060H 0.44 possibly_damaging(0.84) TCGA-CR-7380-01 19 53959107 53959107 G A ZNF761 RNA 0.38 TCGA-CR-7380-01 19 56693617 56693617 C T GALP Silent p.A71A 0.44 TCGA-CR-7380-01 19 9048094 9048094 G T MUC16 Silent p.T11179T 0.21 TCGA-CR-7380-01 19 9801493 9801493 G T ZNF812 Missense_Mutation p.S229Y 0.48 deleterious(0.01) possibly_damaging(0.794) TCGA-CR-7380-01 1 109242023 109242023 G A PRPF38B Missense_Mutation p.R341Q 0.34 deleterious(0.04) unknown(0) TCGA-CR-7380-01 1 175048747 175048747 G A TNN Missense_Mutation p.E230K 0.55 deleterious(0.02) benign(0.149) TCGA-CR-7380-01 1 220955133 220955133 G A MARC2 Missense_Mutation p.D300N 0.16 deleterious(0.01) possibly_damaging(0.824) TCGA-CR-7380-01 1 24460838 24460838 C T IL22RA1 Missense_Mutation p.V132M 0.51 tolerated(0.07) possibly_damaging(0.58) TCGA-CR-7380-01 1 247201303 247201303 G A ZNF670 Silent p.F206F 0.11 TCGA-CR-7380-01 1 33745945 33745945 C T ZNF362 Silent p.S190S 0.25 TCGA-CR-7380-01 1 44085423 44085423 C T PTPRF Missense_Mutation p.R1669W 0.14 deleterious(0) probably_damaging(1) TCGA-CR-7380-01 1 76877873 76877873 A G ST6GALNAC3 Missense_Mutation p.S132G 0.26 probably_damaging(0.976) TCGA-CR-7380-01 1 78392266 78392266 C G NEXN Silent p.L219L 0.26 TCGA-CR-7380-01 1 94543340 94543340 C T ABCA4 Missense_Mutation p.R487Q 0.32 tolerated(0.36) benign(0.002) TCGA-CR-7380-01 20 24994664 24994664 G A ACSS1 Missense_Mutation p.A462V 0.27 tolerated(0.06) possibly_damaging(0.883) TCGA-CR-7380-01 20 57767141 57767141 C T ZNF831 Missense_Mutation p.P356L 0.57 deleterious(0.01) probably_damaging(0.932) TCGA-CR-7380-01 20 8755221 8755221 C T PLCB1 Missense_Mutation p.T989M 0.32 tolerated(0.13) benign(0.007) TCGA-CR-7380-01 22 46776786 46776786 C T CELSR1 Silent p.P2385P 0.29 TCGA-CR-7380-01 22 50716420 50716420 T C PLXNB2 Missense_Mutation p.D1637G 0.38 deleterious(0) probably_damaging(1) TCGA-CR-7380-01 2 108625031 108625031 G T SLC5A7 Missense_Mutation p.G336C 0.42 deleterious(0) probably_damaging(0.987) TCGA-CR-7380-01 2 132276229 132276229 A T AC093838.4 RNA 0.29 TCGA-CR-7380-01 2 160690588 160690588 G A LY75-CD302 Nonsense_Mutation p.Q1270* 0.32 TCGA-CR-7380-01 2 160708798 160708799 - T LY75-CD302 Frame_Shift_Ins p.Y933Ifs*2 0.25 TCGA-CR-7380-01 2 168107151 168107151 A T XIRP2 Missense_Mutation p.Q3083H 0.43 possibly_damaging(0.896) TCGA-CR-7380-01 2 175446145 175446145 A C WIPF1 Missense_Mutation p.L25W 0.22 deleterious(0) probably_damaging(0.999) TCGA-CR-7380-01 2 179400029 179400029 G T TTN Missense_Mutation p.S33771R 0.38 TCGA-CR-7380-01 2 179596116 179596116 C T TTN Missense_Mutation p.E5793K 0.05 TCGA-CR-7380-01 2 189857641 189857641 G T COL3A1 Missense_Mutation p.G342V 0.51 unknown(0) TCGA-CR-7380-01 2 20405159 20405160 - G SDC1 Frame_Shift_Ins p.E32* 0.23 TCGA-CR-7380-01 2 211471497 211471497 C T CPS1 Missense_Mutation p.A681V 0.49 deleterious(0.04) benign(0.075) TCGA-CR-7380-01 2 220422982 220422982 G A OBSL1 Silent p.H1142H 0.63 TCGA-CR-7380-01 2 27800115 27800115 G T C2orf16 Nonsense_Mutation p.E226* 0.30 TCGA-CR-7380-01 2 37543567 37543567 G A PRKD3 Missense_Mutation p.T34M 0.31 tolerated_low_confidence(0.19) benign(0.183) TCGA-CR-7380-01 2 54081573 54081573 G A GPR75 Silent p.F107F 0.05 TCGA-CR-7380-01 2 54753667 54753667 C T SPTBN1 Missense_Mutation p.R38W 0.16 deleterious(0) probably_damaging(0.987) TCGA-CR-7380-01 2 70451687 70451687 C T TIA1 Nonsense_Mutation p.W158* 0.24 TCGA-CR-7380-01 3 174974310 174974310 G A NAALADL2 Silent p.L310L 0.09 TCGA-CR-7380-01 3 51349911 51349911 G T DOCK3 Missense_Mutation p.W1033L 0.07 deleterious(0) benign(0.424) TCGA-CR-7380-01 4 8456493 8456493 C T TRMT44 Nonsense_Mutation p.R386* 0.30 TCGA-CR-7380-01 5 132232472 132232472 G C AFF4 Missense_Mutation p.S617C 0.57 deleterious(0.01) possibly_damaging(0.716) TCGA-CR-7380-01 5 13919309 13919309 C T DNAH5 Silent p.A317A 0.28 TCGA-CR-7380-01 5 140683343 140683343 G A SLC25A2 Silent p.F30F 0.10 TCGA-CR-7380-01 5 153432559 153432559 C T MFAP3 Silent p.F125F 0.51 TCGA-CR-7380-01 5 177577981 177577981 C A NHP2 Missense_Mutation p.A82S 0.10 deleterious(0) probably_damaging(0.993) TCGA-CR-7380-01 5 36608588 36608591 AGTC - SLC1A3 Frame_Shift_Del p.R23Nfs*50 0.30 TCGA-CR-7380-01 6 11191251 11191251 G T NEDD9 Missense_Mutation p.P284Q 0.20 deleterious(0.01) benign(0.221) TCGA-CR-7380-01 6 150209677 150209677 T - RAET1E Frame_Shift_Del p.N250Mfs*11 0.36 TCGA-CR-7380-01 6 24302242 24302242 C T DCDC2 Missense_Mutation p.V127M 0.32 deleterious(0) probably_damaging(0.921) TCGA-CR-7380-01 6 30856982 30856982 G A DDR1 Silent p.L64L 0.31 TCGA-CR-7380-01 6 52992954 52992954 G T GCM1 3'UTR 0.15 TCGA-CR-7380-01 6 74078519 74078519 A T OOEP Missense_Mutation p.D146E 0.08 tolerated(1) benign(0.015) TCGA-CR-7380-01 7 127894691 127894691 A G LEP Missense_Mutation p.T127A 0.24 tolerated(0.24) benign(0.002) TCGA-CR-7380-01 7 129297406 129297406 C T NRF1 Missense_Mutation p.A72V 0.29 tolerated(0.08) possibly_damaging(0.608) TCGA-CR-7380-01 7 143098584 143098584 C T EPHA1 Missense_Mutation p.G89R 0.42 tolerated(0.23) probably_damaging(0.997) TCGA-CR-7380-01 7 148947811 148947811 G A ZNF212 Missense_Mutation p.E152K 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7380-01 7 150649889 150649889 C T KCNH2 Missense_Mutation p.R394H 0.07 deleterious(0) probably_damaging(0.999) TCGA-CR-7380-01 7 156762310 156762310 C T NOM1 Silent p.H832H 0.26 TCGA-CR-7380-01 7 23825153 23825153 C T STK31 Silent p.P735P 0.19 TCGA-CR-7380-01 7 37955724 37955724 G T SFRP4 Missense_Mutation p.P139H 0.53 tolerated(0.06) probably_damaging(0.998) TCGA-CR-7380-01 7 66703464 66703465 - G TYW1 Frame_Shift_Ins p.D717Gfs*49 0.22 TCGA-CR-7380-01 8 100147902 100147902 C T VPS13B Nonsense_Mutation p.R502* 0.29 TCGA-CR-7380-01 8 139890008 139890008 G A COL22A1 Missense_Mutation p.R215C 0.38 unknown(0) TCGA-CR-7380-01 8 49833873 49833888 GAGGACACGGCGGTCC - SNAI2 5'UTR 0.44 TCGA-CR-7380-01 8 61707620 61707620 T A CHD7 Missense_Mutation p.N724K 0.32 benign(0.071) TCGA-CR-7380-01 8 73921257 73921257 G A TERF1 Missense_Mutation p.E46K 0.09 deleterious_low_confidence(0.01) benign(0.004) TCGA-CR-7380-01 8 92365190 92365191 - A SLC26A7 Frame_Shift_Ins p.Y430Ifs*6 0.31 TCGA-CR-7380-01 9 124522454 124522454 C T DAB2IP Silent p.A274A 0.10 TCGA-CR-7380-01 9 131476379 131476379 C T PKN3 Missense_Mutation p.R431C 0.21 tolerated(0.14) benign(0.009) TCGA-CR-7380-01 9 131678559 131678559 G A LRRC8A Missense_Mutation p.R781H 0.34 deleterious(0.05) benign(0.277) TCGA-CR-7380-01 9 131696086 131696086 G T PHYHD1 Missense_Mutation p.S73I 0.40 deleterious(0) probably_damaging(1) TCGA-CR-7380-01 9 139405168 139405168 A T NOTCH1 Missense_Mutation p.C893S 0.32 deleterious(0) probably_damaging(0.976) TCGA-CR-7380-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.71 TCGA-CR-7380-01 9 23692607 23692607 C T ELAVL2 Missense_Mutation p.G343E 0.40 tolerated(0.05) probably_damaging(0.965) TCGA-CR-7380-01 9 32635310 32635310 C T TAF1L Missense_Mutation p.G90S 0.32 tolerated(0.46) benign(0.017) TCGA-CR-7380-01 X 150832808 150832808 C T PASD1 Silent p.G353G 0.34 TCGA-CR-7382-01 10 121685734 121685734 G A SEC23IP Missense_Mutation p.G770R 0.11 deleterious(0) probably_damaging(0.999) TCGA-CR-7382-01 10 26463239 26463239 C A MYO3A Missense_Mutation p.A1349E 0.10 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-CR-7382-01 10 43650731 43650731 C T CSGALNACT2 Missense_Mutation p.P45L 0.11 tolerated(0.33) possibly_damaging(0.835) TCGA-CR-7382-01 10 62648571 62648571 G A RHOBTB1 Silent p.L285L 0.12 TCGA-CR-7382-01 11 108546344 108546344 G A DDX10 Missense_Mutation p.R90H 0.08 tolerated(0.55) possibly_damaging(0.652) TCGA-CR-7382-01 11 123676267 123676267 G A OR6M1 Missense_Mutation p.S264L 0.11 deleterious(0.02) benign(0.061) TCGA-CR-7382-01 11 534289 534289 C T HRAS Missense_Mutation p.G12S 0.54 deleterious(0.02) possibly_damaging(0.525) TCGA-CR-7382-01 11 61089130 61089130 G A DDB1 Missense_Mutation p.R388W 0.07 deleterious(0) probably_damaging(1) TCGA-CR-7382-01 11 61090509 61090509 G A DDB1 Missense_Mutation p.R327C 0.08 tolerated(0.11) possibly_damaging(0.625) TCGA-CR-7382-01 12 11420826 11420826 C A PRB3 Missense_Mutation p.K119N 0.09 tolerated(0.41) unknown(0) TCGA-CR-7382-01 12 44148576 44148576 G A PUS7L Missense_Mutation p.P158L 0.08 tolerated(0.09) benign(0.001) TCGA-CR-7382-01 12 57867414 57867414 G C ARHGAP9 Missense_Mutation p.L666V 0.09 deleterious(0) probably_damaging(0.998) TCGA-CR-7382-01 12 57867440 57867440 G C ARHGAP9 Nonsense_Mutation p.S657* 0.09 TCGA-CR-7382-01 12 65130831 65130831 G A GNS Missense_Mutation p.P351S 0.06 deleterious(0) probably_damaging(1) TCGA-CR-7382-01 13 113508638 113508638 C T ATP11A Silent p.A679A 0.08 TCGA-CR-7382-01 15 40068654 40068654 G T FSIP1 Missense_Mutation p.S24R 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7382-01 15 63942010 63942010 C T HERC1 Missense_Mutation p.R3554Q 0.23 probably_damaging(0.99) TCGA-CR-7382-01 15 68118861 68118861 C T SKOR1 Missense_Mutation p.A418V 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.832) TCGA-CR-7382-01 15 93518123 93518123 C A CHD2 Silent p.S840S 0.16 TCGA-CR-7382-01 16 67318871 67318871 C A PLEKHG4 Missense_Mutation p.P650T 0.18 deleterious(0.02) benign(0.15) TCGA-CR-7382-01 16 67650717 67650717 G A CTCF Missense_Mutation p.R341H 0.09 deleterious(0.04) possibly_damaging(0.873) TCGA-CR-7382-01 16 68382250 68382250 C G PRMT7 Missense_Mutation p.F443L 0.09 tolerated(1) benign(0.001) TCGA-CR-7382-01 16 727018 727018 G A RHBDL1 Silent p.L223L 0.10 TCGA-CR-7382-01 16 727019 727019 C A RHBDL1 Missense_Mutation p.Q224K 0.10 deleterious(0.04) probably_damaging(0.93) TCGA-CR-7382-01 17 10354168 10354168 G A MYH4 Nonsense_Mutation p.Q1304* 0.15 TCGA-CR-7382-01 17 40359614 40359614 G A STAT5B Missense_Mutation p.S680F 0.11 deleterious(0) possibly_damaging(0.831) TCGA-CR-7382-01 17 40854917 40854917 C T EZH1 Missense_Mutation p.E721K 0.09 deleterious(0) probably_damaging(0.993) TCGA-CR-7382-01 17 5085805 5085805 G C ZNF594 Missense_Mutation p.L583V 0.08 deleterious(0) benign(0.032) TCGA-CR-7382-01 17 72926892 72926892 G A OTOP2 Missense_Mutation p.V388M 0.08 deleterious(0) probably_damaging(0.995) TCGA-CR-7382-01 18 48573554 48573554 G A SMAD4 Silent p.K46K 0.07 TCGA-CR-7382-01 18 65178325 65178325 A G DSEL Missense_Mutation p.I1184T 0.13 deleterious(0.01) benign(0.407) TCGA-CR-7382-01 18 72344099 72344099 C A ZNF407 Missense_Mutation p.P375H 0.08 tolerated(0.56) benign(0.28) TCGA-CR-7382-01 18 9255584 9255584 G C ANKRD12 Missense_Mutation p.E773D 0.10 deleterious_low_confidence(0.02) benign(0.044) TCGA-CR-7382-01 19 13414687 13414687 G A CACNA1A Silent p.G666G 0.10 TCGA-CR-7382-01 19 3920766 3920766 C G ATCAY Missense_Mutation p.S359C 0.10 tolerated_low_confidence(0.07) benign(0.002) TCGA-CR-7382-01 19 39369777 39369777 G A SIRT2 3'UTR 0.21 TCGA-CR-7382-01 19 45681407 45681407 C G TRAPPC6A Missense_Mutation p.D24H 0.10 deleterious(0.01) possibly_damaging(0.768) TCGA-CR-7382-01 19 4847853 4847853 C T PLIN3 Silent p.Q228Q 0.17 TCGA-CR-7382-01 19 52715983 52715983 G A PPP2R1A Missense_Mutation p.R183Q 0.15 deleterious(0) probably_damaging(0.997) TCGA-CR-7382-01 19 56539838 56539838 G C NLRP5 Missense_Mutation p.D747H 0.08 tolerated(0.06) benign(0.2) TCGA-CR-7382-01 19 8551952 8551952 C T HNRNPM Silent p.N674N 0.10 TCGA-CR-7382-01 1 100672165 100672165 C G DBT Missense_Mutation p.D349H 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-CR-7382-01 1 151373293 151373293 C T PSMB4 Missense_Mutation p.A183V 0.10 deleterious(0) probably_damaging(0.995) TCGA-CR-7382-01 1 181702070 181702070 G T CACNA1E Nonsense_Mutation p.E950* 0.10 TCGA-CR-7382-01 1 19577911 19577911 A G EMC1 Silent p.D31D 0.15 TCGA-CR-7382-01 1 236175241 236175241 C T NID1 Missense_Mutation p.G836D 0.08 deleterious(0) probably_damaging(1) TCGA-CR-7382-01 1 237961367 237961367 C T RYR2 Nonsense_Mutation p.R4663* 0.14 TCGA-CR-7382-01 1 244735832 244735832 C G C1orf101 Missense_Mutation p.L570V 0.10 deleterious(0.03) possibly_damaging(0.753) TCGA-CR-7382-01 1 33745847 33745847 G A ZNF362 Missense_Mutation p.A158T 0.05 tolerated(0.17) benign(0.383) TCGA-CR-7382-01 20 10604013 10604013 G A SLX4IP Missense_Mutation p.E405K 0.08 tolerated_low_confidence(0.18) benign(0.009) TCGA-CR-7382-01 20 18491571 18491571 C T SEC23B Missense_Mutation p.A31V 0.07 deleterious(0.02) possibly_damaging(0.855) TCGA-CR-7382-01 20 50255990 50255990 G C ATP9A Missense_Mutation p.D520E 0.07 deleterious(0.03) benign(0.362) TCGA-CR-7382-01 22 21335410 21335410 T C AIFM3 3'UTR 0.46 TCGA-CR-7382-01 22 23063594 23063594 G A IGLV3-19 Missense_Mutation p.E101K 0.21 deleterious(0.01) probably_damaging(0.975) TCGA-CR-7382-01 22 30184986 30184986 G A ASCC2 3'UTR 0.12 TCGA-CR-7382-01 22 50580618 50580618 G A MOV10L1 Missense_Mutation p.V727I 0.18 tolerated(0.34) benign(0.002) TCGA-CR-7382-01 2 120194495 120194495 C T TMEM37 Missense_Mutation p.R18C 0.13 tolerated(0.06) benign(0.002) TCGA-CR-7382-01 2 128389183 128389183 C T MYO7B Missense_Mutation p.R1676W 0.15 deleterious(0) possibly_damaging(0.513) TCGA-CR-7382-01 2 159535144 159535144 G C PKP4 Missense_Mutation p.R1103T 0.19 tolerated(0.35) benign(0.009) TCGA-CR-7382-01 2 202149644 202149644 A G CASP8 Missense_Mutation p.D362G 0.17 deleterious(0.01) possibly_damaging(0.77) TCGA-CR-7382-01 2 237032621 237032621 G A AGAP1 Missense_Mutation p.R810Q 0.07 deleterious(0.05) possibly_damaging(0.49) TCGA-CR-7382-01 2 43984289 43984289 C T PLEKHH2 Missense_Mutation p.S1276L 0.06 deleterious(0.04) benign(0.098) TCGA-CR-7382-01 3 179076745 179076745 A C MFN1 Missense_Mutation p.K122N 0.11 deleterious(0.02) possibly_damaging(0.678) TCGA-CR-7382-01 3 32933083 32933083 G A TRIM71 Missense_Mutation p.R796H 0.11 deleterious(0) probably_damaging(1) TCGA-CR-7382-01 3 58555543 58555543 C G FAM107A Silent p.L15L 0.11 TCGA-CR-7382-01 3 58639409 58639409 C T FAM3D Missense_Mutation p.R38H 0.08 tolerated(0.08) possibly_damaging(0.888) TCGA-CR-7382-01 4 129864211 129864211 C T SCLT1 Silent p.R524R 0.08 TCGA-CR-7382-01 4 129873944 129873944 C A SCLT1 Nonsense_Mutation p.E400* 0.08 TCGA-CR-7382-01 4 146767142 146767142 G A ZNF827 Missense_Mutation p.H749Y 0.07 deleterious(0) benign(0.176) TCGA-CR-7382-01 4 187541184 187541184 A C FAT1 Missense_Mutation p.F2186V 0.07 probably_damaging(0.999) TCGA-CR-7382-01 4 3445789 3445789 G A HGFAC Missense_Mutation p.G167S 0.12 tolerated(0.85) benign(0.004) TCGA-CR-7382-01 4 7726911 7726911 T C SORCS2 Missense_Mutation p.V881A 0.21 tolerated(1) benign(0.023) TCGA-CR-7382-01 5 131892962 131892962 C G RAD50 5'UTR 0.10 TCGA-CR-7382-01 5 140799485 140799485 G A PCDHGB7 Missense_Mutation p.E687K 0.10 tolerated(0.09) possibly_damaging(0.888) TCGA-CR-7382-01 5 167689098 167689098 C G TENM2 Silent p.A2536A 0.13 TCGA-CR-7382-01 5 169477279 169477279 G A DOCK2 Missense_Mutation p.R1364H 0.10 deleterious(0) probably_damaging(1) TCGA-CR-7382-01 5 176314244 176314244 G C HK3 Missense_Mutation p.I565M 0.17 tolerated(0.19) benign(0.421) TCGA-CR-7382-01 5 33624346 33624346 C T ADAMTS12 Silent p.K711K 0.05 TCGA-CR-7382-01 5 41008749 41008749 C T MROH2B Silent p.V1189V 0.10 TCGA-CR-7382-01 5 55082475 55082475 G A DDX4 Missense_Mutation p.A332T 0.05 deleterious(0) possibly_damaging(0.859) TCGA-CR-7382-01 5 79030604 79030604 G C CMYA5 Missense_Mutation p.E2006Q 0.10 benign(0.255) TCGA-CR-7382-01 6 139101031 139101031 C T CCDC28A Silent p.S167S 0.11 TCGA-CR-7382-01 6 46847692 46847692 G A GPR116 Missense_Mutation p.S300F 0.10 deleterious(0.01) possibly_damaging(0.588) TCGA-CR-7382-01 6 90461165 90461166 - G MDN1 Frame_Shift_Ins p.R1071Pfs*20 0.14 TCGA-CR-7382-01 7 107114488 107114488 A C GPR22 5'UTR 0.19 TCGA-CR-7382-01 7 123142651 123142651 C T IQUB Silent p.A341A 0.08 TCGA-CR-7382-01 7 83014672 83014672 G A SEMA3E Nonsense_Mutation p.R605* 0.13 TCGA-CR-7382-01 7 94051241 94051241 C T COL1A2 Missense_Mutation p.R794W 0.09 unknown(0) TCGA-CR-7382-01 7 99117510 99117510 C A ZKSCAN5 Nonsense_Mutation p.S205* 0.14 TCGA-CR-7382-01 8 103305835 103305835 G A UBR5 Silent p.S1529S 0.10 TCGA-CR-7382-01 8 140744267 140744267 G A TRAPPC9 Silent p.H1176H 0.26 TCGA-CR-7382-01 8 21843104 21843104 G A XPO7 Silent p.L493L 0.22 TCGA-CR-7382-01 9 100331211 100331211 G A TMOD1 Silent p.L254L 0.11 TCGA-CR-7382-01 9 100331220 100331220 G A TMOD1 Silent p.L257L 0.12 TCGA-CR-7382-01 9 101585618 101585618 C T GALNT12 Missense_Mutation p.T151I 0.05 deleterious(0) probably_damaging(1) TCGA-CR-7382-01 9 132740854 132740854 C T FNBP1 Missense_Mutation p.E79K 0.12 deleterious(0) probably_damaging(0.996) TCGA-CR-7382-01 9 141016410 141016410 C T CACNA1B Missense_Mutation p.R2327W 0.17 deleterious(0) possibly_damaging(0.893) TCGA-CR-7382-01 9 20789459 20789459 C T FOCAD Missense_Mutation p.A436V 0.12 tolerated(0.5) benign(0.034) TCGA-CR-7382-01 9 35618375 35618375 G A CD72 5'UTR 0.19 TCGA-CR-7382-01 9 38414183 38414183 G A IGFBPL1 Missense_Mutation p.P160S 0.06 deleterious(0.03) possibly_damaging(0.705) TCGA-CR-7382-01 9 79465512 79465512 C T PRUNE2 Missense_Mutation p.E71K 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-CR-7382-01 9 90321943 90321943 G A DAPK1 Silent p.P1319P 0.07 TCGA-CR-7382-01 9 95094556 95094556 G C CENPP Missense_Mutation p.S71T 0.11 tolerated(0.88) benign(0.153) TCGA-CR-7383-01 10 108716285 108716285 C G SORCS1 Missense_Mutation p.E204D 0.39 tolerated(0.08) probably_damaging(0.961) TCGA-CR-7383-01 10 127519144 127519144 C T BCCIP Missense_Mutation p.S112L 0.10 tolerated(0.14) benign(0.1) TCGA-CR-7383-01 10 134219279 134219279 C G PWWP2B Missense_Mutation p.S425R 0.10 deleterious(0.02) possibly_damaging(0.627) TCGA-CR-7383-01 11 108380358 108380358 T C EXPH5 Missense_Mutation p.Y1959C 0.32 deleterious(0.02) benign(0.302) TCGA-CR-7383-01 11 123811134 123811134 G A OR4D5 Missense_Mutation p.V271I 0.30 tolerated(0.33) benign(0.01) TCGA-CR-7383-01 11 57080223 57080223 C A TNKS1BP1 Nonsense_Mutation p.E647* 0.20 TCGA-CR-7383-01 11 61505662 61505662 C T DAGLA Nonsense_Mutation p.R547* 0.24 TCGA-CR-7383-01 11 62488775 62488775 G A HNRNPUL2 Missense_Mutation p.L535F 0.04 deleterious(0) probably_damaging(0.986) TCGA-CR-7383-01 11 65417519 65417519 G T SIPA1 Nonsense_Mutation p.E949* 0.24 TCGA-CR-7383-01 12 100728042 100728042 G A SCYL2 Silent p.Q620Q 0.27 TCGA-CR-7383-01 12 11126310 11126310 T A PRR4 RNA 0.29 TCGA-CR-7383-01 12 11421068 11421068 G A PRB3 Nonsense_Mutation p.R39* 0.24 TCGA-CR-7383-01 12 11545926 11545926 A G PRB2 Silent p.P362P 0.20 TCGA-CR-7383-01 12 120214570 120214570 C T CIT Missense_Mutation p.R581Q 0.35 tolerated(0.09) benign(0.35) TCGA-CR-7383-01 12 121432043 121432043 G A HNF1A Missense_Mutation p.V264I 0.36 deleterious(0.01) possibly_damaging(0.855) TCGA-CR-7383-01 12 13828761 13828761 T G GRIN2B Missense_Mutation p.N348T 0.22 deleterious(0) probably_damaging(0.989) TCGA-CR-7383-01 12 40681270 40681270 A T LRRK2 Missense_Mutation p.D873V 0.11 deleterious(0.01) benign(0.347) TCGA-CR-7383-01 12 49522232 49522232 C G TUBA1B Missense_Mutation p.A289P 0.19 tolerated_low_confidence(0.15) benign(0.001) TCGA-CR-7383-01 12 57602910 57602910 G T LRP1 Missense_Mutation p.A4064S 0.18 benign(0.444) TCGA-CR-7383-01 12 6753641 6753641 C T ACRBP Silent p.E202E 0.18 TCGA-CR-7383-01 13 28880897 28880897 C T FLT1 Missense_Mutation p.D1245N 0.23 deleterious(0.01) possibly_damaging(0.676) TCGA-CR-7383-01 13 33091954 33091954 G T N4BP2L2 Intron 0.15 TCGA-CR-7383-01 13 53616150 53616150 G T OLFM4 Missense_Mutation p.D155Y 0.26 deleterious(0) probably_damaging(0.968) TCGA-CR-7383-01 13 92560274 92560274 T C GPC5 Missense_Mutation p.I455T 0.25 deleterious(0.02) benign(0.262) TCGA-CR-7383-01 14 50713770 50713770 C A L2HGDH 3'UTR 0.06 TCGA-CR-7383-01 14 52794093 52794093 G A PTGER2 Missense_Mutation p.R333Q 0.19 tolerated(0.58) benign(0.003) TCGA-CR-7383-01 14 90798195 90798195 G T NRDE2 Missense_Mutation p.S18R 0.13 tolerated(0.06) benign(0.235) TCGA-CR-7383-01 14 93176022 93176022 G A LGMN Silent p.L339L 0.21 TCGA-CR-7383-01 14 96851862 96851862 G A GSKIP Silent p.V87V 0.20 TCGA-CR-7383-01 15 25436628 25436628 G T SNORD115-12 RNA 0.12 TCGA-CR-7383-01 15 65871653 65871653 G A VWA9 3'UTR 0.06 TCGA-CR-7383-01 16 20559465 20559465 C T ACSM2B Silent p.E339E 0.32 TCGA-CR-7383-01 16 71663461 71663461 G A MARVELD3 Intron 0.14 TCGA-CR-7383-01 16 89986164 89986164 G A MC1R Silent p.A166A 0.18 TCGA-CR-7383-01 17 15231310 15231310 G A TEKT3 Missense_Mutation p.T221M 0.24 tolerated(0.06) benign(0.094) TCGA-CR-7383-01 17 1840355 1840355 C A RTN4RL1 Missense_Mutation p.G254V 0.49 deleterious(0) probably_damaging(0.955) TCGA-CR-7383-01 17 18923025 18923025 G A SLC5A10 Splice_Site p.X487_splice 0.09 TCGA-CR-7383-01 17 18923032 18923032 T C SLC5A10 Missense_Mutation p.F489L 0.09 deleterious(0.01) possibly_damaging(0.615) TCGA-CR-7383-01 17 26817912 26817912 G C SLC13A2 Missense_Mutation p.V237L 0.18 tolerated(0.58) benign(0.003) TCGA-CR-7383-01 17 27086837 27086837 G A FAM222B Missense_Mutation p.A47V 0.33 deleterious(0) probably_damaging(0.972) TCGA-CR-7383-01 17 35600294 35600294 C T ACACA Missense_Mutation p.S975N 0.11 deleterious(0) probably_damaging(0.981) TCGA-CR-7383-01 17 40128850 40128850 C G CNP 3'UTR 0.10 TCGA-CR-7383-01 17 44060805 44060805 C T MAPT Missense_Mutation p.P212L 0.25 tolerated(0.31) benign(0) TCGA-CR-7383-01 17 59821801 59821801 C A BRIP1 Missense_Mutation p.G750V 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-CR-7383-01 17 65104673 65104673 C T HELZ Silent p.P1553P 0.08 TCGA-CR-7383-01 17 67039587 67039587 T A ABCA9 Intron 0.09 TCGA-CR-7383-01 17 73725497 73725497 C T ITGB4 Silent p.L240L 0.31 TCGA-CR-7383-01 17 7576852 7576852 C T TP53 Splice_Site p.X331_splice 0.49 TCGA-CR-7383-01 18 21017841 21017841 G A TMEM241 5'UTR 0.26 TCGA-CR-7383-01 18 22056762 22056762 G A HRH4 Missense_Mutation p.V137M 0.27 tolerated(0.06) possibly_damaging(0.481) TCGA-CR-7383-01 18 2946508 2946508 G A LPIN2 Intron 0.32 TCGA-CR-7383-01 18 57569917 57569917 G A PMAIP1 Missense_Mutation p.G33R 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7383-01 19 11134270 11134270 G A SMARCA4 Missense_Mutation p.R979Q 0.27 probably_damaging(0.971) TCGA-CR-7383-01 19 11537572 11537572 C T CCDC151 Silent p.K215K 0.26 TCGA-CR-7383-01 19 14521049 14521049 C A DDX39A Silent p.V237V 0.28 TCGA-CR-7383-01 19 35657174 35657174 C T FXYD5 Missense_Mutation p.R145W 0.17 deleterious(0) probably_damaging(0.996) TCGA-CR-7383-01 19 37129598 37129598 A T ZNF461 Missense_Mutation p.V550D 0.13 deleterious(0.03) benign(0.368) TCGA-CR-7383-01 19 4054997 4054997 G C ZBTB7A Missense_Mutation p.D78E 0.16 deleterious(0.02) probably_damaging(0.968) TCGA-CR-7383-01 19 42930494 42930494 C T LIPE Missense_Mutation p.V270M 0.17 tolerated_low_confidence(0.19) benign(0.002) TCGA-CR-7383-01 19 45681404 45681404 G T TRAPPC6A Missense_Mutation p.P25T 0.16 deleterious(0.04) benign(0.035) TCGA-CR-7383-01 19 46191786 46191786 T G SNRPD2 Missense_Mutation p.E14A 0.13 tolerated(0.17) benign(0.124) TCGA-CR-7383-01 19 51506324 51506324 C T KLK9 3'UTR 0.16 TCGA-CR-7383-01 19 54848719 54848719 A G LILRA4 Missense_Mutation p.S302P 0.20 deleterious(0.02) possibly_damaging(0.861) TCGA-CR-7383-01 19 6749986 6749986 C T TRIP10 Missense_Mutation p.P379L 0.25 deleterious(0) probably_damaging(0.987) TCGA-CR-7383-01 19 8809062 8809062 C T ACTL9 5'UTR 0.18 TCGA-CR-7383-01 1 110254866 110254866 C T GSTM5 5'Flank 0.16 TCGA-CR-7383-01 1 114397603 114397603 G A PTPN22 Silent p.D203D 0.24 TCGA-CR-7383-01 1 120458389 120458389 G - NOTCH2 Frame_Shift_Del p.A2319Gfs*39 0.11 TCGA-CR-7383-01 1 167096196 167096196 G A DUSP27 Missense_Mutation p.E610K 0.09 deleterious(0) benign(0.282) TCGA-CR-7383-01 1 176738746 176738746 G T PAPPA2 Nonsense_Mutation p.E1443* 0.24 TCGA-CR-7383-01 1 200818427 200818427 C T CAMSAP2 Missense_Mutation p.P844S 0.15 tolerated(0.56) benign(0.009) TCGA-CR-7383-01 1 201817629 201817629 C A IPO9 Missense_Mutation p.P141T 0.15 deleterious(0) probably_damaging(0.992) TCGA-CR-7383-01 1 22163405 22163405 G C HSPG2 Silent p.A3415A 0.27 TCGA-CR-7383-01 1 231396328 231396330 AAA - GNPAT In_Frame_Del p.K113del 0.12 TCGA-CR-7383-01 1 231829916 231829916 C A DISC1 Missense_Mutation p.P138T 0.36 deleterious(0.01) probably_damaging(0.967) TCGA-CR-7383-01 1 235324629 235324629 C - RBM34 5'UTR 0.22 TCGA-CR-7383-01 1 247201495 247201495 A G ZNF670 Silent p.H142H 0.28 TCGA-CR-7383-01 1 248458349 248458349 C T OR2T12 Missense_Mutation p.E178K 0.21 deleterious(0.01) probably_damaging(0.939) TCGA-CR-7383-01 1 248524920 248524920 G T OR2T4 Missense_Mutation p.W13L 0.20 tolerated_low_confidence(0.67) benign(0.001) TCGA-CR-7383-01 1 248685642 248685642 C T OR2G6 Missense_Mutation p.A232V 0.25 tolerated(0.11) benign(0.009) TCGA-CR-7383-01 1 32092659 32092659 G T HCRTR1 3'UTR 0.11 TCGA-CR-7383-01 1 32740034 32740034 C T LCK Missense_Mutation p.T35M 0.29 tolerated_low_confidence(0.08) benign(0) TCGA-CR-7383-01 1 33329769 33329769 G A FNDC5 3'UTR 0.19 TCGA-CR-7383-01 1 33363922 33363922 T A TMEM54 Splice_Site p.X6_splice 0.31 TCGA-CR-7383-01 1 45293182 45293182 C T PTCH2 Missense_Mutation p.A755T 0.26 tolerated(0.13) benign(0.01) TCGA-CR-7383-01 1 59042502 59042502 G A TACSTD2 Silent p.D109D 0.34 TCGA-CR-7383-01 1 89298809 89298809 C T PKN2 Missense_Mutation p.A907V 0.15 deleterious(0) probably_damaging(1) TCGA-CR-7383-01 1 94506793 94506793 T C ABCA4 Missense_Mutation p.N1165S 0.08 tolerated(1) benign(0.004) TCGA-CR-7383-01 20 43926821 43926822 GC - MATN4 Frame_Shift_Del p.A472Qfs*161 0.12 TCGA-CR-7383-01 20 62326202 62326202 C T RTEL1 Missense_Mutation p.S1097F 0.14 deleterious(0.03) possibly_damaging(0.725) TCGA-CR-7383-01 21 37788586 37788586 C T CHAF1B Silent p.D534D 0.12 TCGA-CR-7383-01 21 40650700 40650700 G A BRWD1 Silent p.G324G 0.28 TCGA-CR-7383-01 22 23406115 23406115 G A RTDR1 Silent p.I206I 0.08 TCGA-CR-7383-01 2 100011184 100011184 A G EIF5B Missense_Mutation p.Y1031C 0.22 probably_damaging(0.997) TCGA-CR-7383-01 2 15415841 15415841 G A NBAS Missense_Mutation p.P1831S 0.14 tolerated(0.3) benign(0.09) TCGA-CR-7383-01 2 168101674 168101674 G A XIRP2 Missense_Mutation p.D1258N 0.07 benign(0.043) TCGA-CR-7383-01 2 17697544 17697544 A G RAD51AP2 Silent p.C713C 0.16 TCGA-CR-7383-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7383-01 2 179395925 179395925 G - TTN Frame_Shift_Del p.V35140Sfs*21 0.16 TCGA-CR-7383-01 2 242350491 242350491 C T FARP2 Missense_Mutation p.R152C 0.18 deleterious(0) probably_damaging(0.954) TCGA-CR-7383-01 2 99863255 99863255 A C LYG2 Missense_Mutation p.S24R 0.24 deleterious(0.04) benign(0.018) TCGA-CR-7383-01 3 147114119 147114119 C G ZIC4 Missense_Mutation p.D120H 0.33 deleterious(0) probably_damaging(0.936) TCGA-CR-7383-01 3 170078020 170078020 C T SKIL 5'UTR 0.21 TCGA-CR-7383-01 3 183381264 183381264 G A KLHL24 Silent p.E313E 0.24 TCGA-CR-7383-01 3 193343972 193343972 A G OPA1 Missense_Mutation p.Y239C 0.23 tolerated(0.17) benign(0.235) TCGA-CR-7383-01 3 195595233 195595233 G C TNK2 Missense_Mutation p.P709A 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.664) TCGA-CR-7383-01 3 20082194 20082194 C T KAT2B Silent p.I75I 0.32 TCGA-CR-7383-01 3 42739102 42739102 C T HHATL Missense_Mutation p.V255M 0.13 deleterious(0.03) benign(0.066) TCGA-CR-7383-01 4 162463813 162463813 G T FSTL5 Missense_Mutation p.Q350K 0.12 deleterious(0) probably_damaging(0.952) TCGA-CR-7383-01 4 73012967 73012967 T A NPFFR2 Missense_Mutation p.L336H 0.13 deleterious(0) probably_damaging(0.997) TCGA-CR-7383-01 4 8224685 8224685 G T SH3TC1 Missense_Mutation p.V411L 0.15 tolerated(0.12) benign(0.18) TCGA-CR-7383-01 4 84216583 84216583 G C HPSE Missense_Mutation p.L516V 0.12 deleterious(0.02) possibly_damaging(0.725) TCGA-CR-7383-01 5 126250611 126250611 C T MARCH3 Intron 0.18 TCGA-CR-7383-01 5 140255327 140255327 C A PCDHA12 Silent p.I90I 0.13 TCGA-CR-7383-01 5 140741197 140741197 C T PCDHGB2 Missense_Mutation p.R499W 0.14 tolerated(0.14) probably_damaging(0.932) TCGA-CR-7383-01 5 150922100 150922100 A G FAT2 Missense_Mutation p.L2863P 0.15 probably_damaging(0.995) TCGA-CR-7383-01 5 154200018 154200018 T C FAXDC2 Missense_Mutation p.Y287C 0.14 deleterious(0) probably_damaging(0.982) TCGA-CR-7383-01 5 154250226 154250226 A G CNOT8 Missense_Mutation p.D106G 0.26 deleterious(0) probably_damaging(0.997) TCGA-CR-7383-01 5 16674967 16674967 C T MYO10 Silent p.L1653L 0.09 TCGA-CR-7383-01 5 96518925 96518925 T A CTD-2215E18.1 Silent p.S82S 0.26 TCGA-CR-7383-01 6 117128089 117128089 C T GPRC6A Missense_Mutation p.R260Q 0.10 tolerated(1) benign(0.001) TCGA-CR-7383-01 6 121401861 121401861 C T TBC1D32 3'Flank 0.22 TCGA-CR-7383-01 6 123130244 123130244 G T SMPDL3A Missense_Mutation p.L351F 0.12 tolerated(0.34) benign(0.013) TCGA-CR-7383-01 6 153043080 153043080 C T MYCT1 Nonsense_Mutation p.R134* 0.26 TCGA-CR-7383-01 6 24667534 24667534 A G ACOT13 Missense_Mutation p.M15V 0.29 tolerated(0.33) benign(0) TCGA-CR-7383-01 6 45459775 45459775 C A RUNX2 Silent p.V261V 0.09 TCGA-CR-7383-01 6 62390900 62390900 C G KHDRBS2 Missense_Mutation p.G340R 0.11 tolerated(0.37) benign(0.287) TCGA-CR-7383-01 6 76715082 76715086 TAGCT AGCCTTTTGAG IMPG1 In_Frame_Ins p.A352_T353delinsSKGS 0.12 TCGA-CR-7383-01 7 100479790 100479790 A G SRRT Missense_Mutation p.Y172C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CR-7383-01 7 100553050 100553050 G A MUC3A Silent p.V565V 0.09 TCGA-CR-7383-01 7 142499875 142499875 G A TRBC2 Missense_Mutation p.A165T 0.09 tolerated(0.26) benign(0.018) TCGA-CR-7383-01 7 151875040 151875040 C T KMT2C Missense_Mutation p.V2500M 0.13 benign(0.04) TCGA-CR-7383-01 7 154863042 154863042 C T HTR5A Missense_Mutation p.R145C 0.21 deleterious(0) benign(0.248) TCGA-CR-7383-01 7 158738290 158738290 G T WDR60 Silent p.A1007A 0.10 TCGA-CR-7383-01 7 50611624 50611624 C A DDC Nonsense_Mutation p.E54* 0.32 TCGA-CR-7383-01 7 62752615 62752615 G A ZNF733P RNA 0.13 TCGA-CR-7383-01 7 89861767 89861767 T G STEAP2 Silent p.L434L 0.23 TCGA-CR-7383-01 8 100287445 100287445 C G VPS13B Missense_Mutation p.I929M 0.13 deleterious(0.03) benign(0.043) TCGA-CR-7383-01 8 104419953 104419953 T C SLC25A32 Missense_Mutation p.I72V 0.11 tolerated(0.22) benign(0.107) TCGA-CR-7383-01 8 131922053 131922053 G A ADCY8 Missense_Mutation p.S514L 0.12 deleterious(0) probably_damaging(0.997) TCGA-CR-7383-01 8 145001198 145001198 A T PLEC Missense_Mutation p.S1435T 0.17 benign(0.184) TCGA-CR-7383-01 8 15621812 15621812 C A TUSC3 3'UTR 0.36 TCGA-CR-7383-01 8 53062328 53062328 A T ST18 Nonsense_Mutation p.Y672* 0.09 TCGA-CR-7383-01 8 7694042 7694042 T C DEFB104A Silent p.L12L 0.12 TCGA-CR-7383-01 8 92365191 92365191 A T SLC26A7 Missense_Mutation p.L427F 0.08 deleterious(0) probably_damaging(0.999) TCGA-CR-7383-01 9 116130642 116130642 G A BSPRY Missense_Mutation p.A221T 0.10 deleterious(0.05) possibly_damaging(0.616) TCGA-CR-7383-01 9 6587232 6587232 G A GLDC Nonsense_Mutation p.Q587* 0.30 TCGA-CR-7383-01 9 95280053 95280053 A T ECM2 Missense_Mutation p.C133S 0.41 deleterious(0.02) possibly_damaging(0.541) TCGA-CR-7383-01 X 100177997 100177997 T A XKRX Missense_Mutation p.E130V 0.37 deleterious(0) possibly_damaging(0.741) TCGA-CR-7383-01 X 101382142 101382142 A T TCEAL2 Missense_Mutation p.S114C 0.34 deleterious(0.05) possibly_damaging(0.902) TCGA-CR-7383-01 X 107909817 107909817 T C COL4A5 Silent p.G1182G 0.30 TCGA-CR-7383-01 X 114541413 114541413 A C LUZP4 3'UTR 0.20 TCGA-CR-7383-01 X 118925600 118925600 G A RPL39 5'UTR 0.27 TCGA-CR-7383-01 X 152610352 152610352 G A ZNF275 Intron 0.14 TCGA-CR-7383-01 X 51150063 51150063 C T CXorf67 Silent p.A65A 0.13 TCGA-CR-7383-01 X 67433776 67433777 - A OPHN1 Frame_Shift_Ins p.E176Rfs*5 0.11 TCGA-CR-7383-01 X 77529270 77529270 C G CYSLTR1 Intron 0.22 TCGA-CR-7383-01 X 84585990 84585990 G A POF1B Silent p.H273H 0.26 TCGA-CR-7383-01 X 99852545 99852545 G C TNMD Missense_Mutation p.W156C 0.10 deleterious(0) probably_damaging(0.999) TCGA-CR-7385-01 10 46961947 46961947 G A SYT15 3'UTR 0.06 TCGA-CR-7385-01 10 96708979 96708979 G A CYP2C9 Missense_Mutation p.E253K 0.10 tolerated(0.31) benign(0.009) TCGA-CR-7385-01 11 107224441 107224441 C G CWF19L2 Missense_Mutation p.D632H 0.16 deleterious(0) benign(0.284) TCGA-CR-7385-01 11 18557990 18557992 CTT - UEVLD In_Frame_Del p.E362del 0.22 TCGA-CR-7385-01 11 5021081 5021081 A G OR51L1 Missense_Mutation p.N290S 0.10 deleterious(0) probably_damaging(0.99) TCGA-CR-7385-01 11 78413296 78413296 G A TENM4 Silent p.D1454D 0.16 TCGA-CR-7385-01 12 27149786 27149786 G A TM7SF3 Missense_Mutation p.P136L 0.15 deleterious(0) probably_damaging(0.92) TCGA-CR-7385-01 12 68724993 68724993 A G MDM1 Silent p.S9S 0.05 TCGA-CR-7385-01 12 78400292 78400292 C T NAV3 Missense_Mutation p.S325F 0.17 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-CR-7385-01 12 9027036 9027036 C G A2ML1 Missense_Mutation p.Q1413E 0.22 tolerated(0.39) benign(0.348) TCGA-CR-7385-01 14 53223283 53223283 A T STYX Missense_Mutation p.D86V 0.14 deleterious(0) probably_damaging(0.93) TCGA-CR-7385-01 15 42111558 42111558 G A MAPKBP1 Silent p.K808K 0.10 TCGA-CR-7385-01 15 85341886 85341886 C G ZNF592 Nonsense_Mutation p.S935* 0.13 TCGA-CR-7385-01 16 29888272 29888272 C T SEZ6L2 Splice_Site p.X637_splice 0.14 TCGA-CR-7385-01 16 31138398 31138398 G A KAT8 Missense_Mutation p.E169K 0.21 deleterious(0) possibly_damaging(0.707) TCGA-CR-7385-01 18 61304845 61304845 G A SERPINB4 3'UTR 0.22 TCGA-CR-7385-01 19 1387822 1387822 G A NDUFS7 Missense_Mutation p.R10H 0.19 tolerated_low_confidence(0.14) benign(0.183) TCGA-CR-7385-01 19 1802615 1802615 G A ATP8B3 Missense_Mutation p.R312W 0.23 deleterious(0) probably_damaging(0.982) TCGA-CR-7385-01 19 55823304 55823304 G A BRSK1 Silent p.R735R 0.13 TCGA-CR-7385-01 1 152191393 152191393 G T HRNR Silent p.P904P 0.14 TCGA-CR-7385-01 1 152191395 152191395 G C HRNR Missense_Mutation p.P904A 0.14 unknown(0) TCGA-CR-7385-01 1 154987971 154987971 G A ZBTB7B Missense_Mutation p.E313K 0.17 tolerated(0.28) possibly_damaging(0.801) TCGA-CR-7385-01 1 203017400 203017400 G A PPFIA4 5'Flank 0.14 TCGA-CR-7385-01 1 211545470 211545470 C A TRAF5 Missense_Mutation p.A367D 0.24 tolerated(0.46) benign(0.001) TCGA-CR-7385-01 1 214478569 214478569 A C SMYD2 Silent p.A71A 0.22 TCGA-CR-7385-01 21 47959793 47959793 C T DIP2A Missense_Mutation p.S642L 0.32 deleterious(0) probably_damaging(0.997) TCGA-CR-7385-01 2 166170610 166170610 G - SCN2A Frame_Shift_Del p.E459Kfs*22 0.15 TCGA-CR-7385-01 2 216002861 216002861 A T ABCA12 Splice_Site p.X23_splice 0.47 TCGA-CR-7385-01 2 74685002 74685002 C T INO80B 3'UTR 0.25 TCGA-CR-7385-01 3 179525565 179525565 C T PEX5L Missense_Mutation p.E525K 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-CR-7385-01 3 42679772 42679772 G A NKTR Missense_Mutation p.R859K 0.12 tolerated_low_confidence(0.85) possibly_damaging(0.899) TCGA-CR-7385-01 3 52544478 52544478 T C STAB1 Silent p.G914G 0.33 TCGA-CR-7385-01 3 87276655 87276655 C A CHMP2B 5'UTR 0.09 TCGA-CR-7385-01 3 9726305 9726305 G C MTMR14 Missense_Mutation p.W334S 0.05 deleterious(0) probably_damaging(0.995) TCGA-CR-7385-01 4 6087152 6087152 C T JAKMIP1 Missense_Mutation p.V277I 0.11 tolerated(0.15) benign(0.031) TCGA-CR-7385-01 4 71467197 71467197 A G AMBN Silent p.Q119Q 0.27 TCGA-CR-7385-01 5 137500599 137500599 G A BRD8 Missense_Mutation p.P512L 0.05 tolerated(0.27) benign(0.002) TCGA-CR-7385-01 5 137680937 137680937 G A FAM53C Missense_Mutation p.R187K 0.17 tolerated(1) possibly_damaging(0.567) TCGA-CR-7385-01 5 54456872 54456872 T G GPX8 Missense_Mutation p.N85K 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-CR-7385-01 5 77590312 77590312 G A AP3B1 Missense_Mutation p.S31L 0.14 deleterious(0.01) benign(0.005) TCGA-CR-7385-01 6 13273268 13273268 G A TBC1D7 Intron 0.08 TCGA-CR-7385-01 6 151670504 151670504 G C AKAP12 Missense_Mutation p.K326N 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-CR-7385-01 6 26033429 26033429 C G HIST1H2AB Missense_Mutation p.S123T 0.11 tolerated_low_confidence(0.06) benign(0) TCGA-CR-7385-01 6 35262305 35262305 G A ZNF76 Missense_Mutation p.A523T 0.09 tolerated(0.85) probably_damaging(0.998) TCGA-CR-7385-01 6 42689524 42689524 G A PRPH2 Silent p.R183R 0.11 TCGA-CR-7385-01 6 43472753 43472753 G A TJAP1 Silent p.P278P 0.12 TCGA-CR-7385-01 7 100451815 100451815 C T SLC12A9 5'UTR 0.10 TCGA-CR-7385-01 7 6226735 6226735 C T CYTH3 Silent p.Q65Q 0.15 TCGA-CR-7385-01 9 119382714 119382714 C G ASTN2 Missense_Mutation p.K976N 0.17 deleterious(0) unknown(0) TCGA-CR-7385-01 9 27949880 27949880 C A LINGO2 Missense_Mutation p.V264L 0.17 deleterious(0.03) benign(0.005) TCGA-CR-7385-01 9 88650358 88650358 C G GOLM1 Missense_Mutation p.E314Q 0.15 tolerated(0.3) possibly_damaging(0.859) TCGA-CR-7385-01 X 140786496 140786496 C T SPANXD Missense_Mutation p.E23K 0.37 tolerated(0.11) benign(0.007) TCGA-CR-7385-01 X 69458123 69458123 C T AWAT1 Silent p.L174L 0.27 TCGA-CR-7386-01 10 105362900 105362900 G C SH3PXD2A Nonsense_Mutation p.S664* 0.14 TCGA-CR-7386-01 10 105814753 105814753 C G COL17A1 Missense_Mutation p.S577T 0.10 unknown(0) TCGA-CR-7386-01 10 124097537 124097537 G C BTBD16 Missense_Mutation p.L486F 0.13 tolerated(0.14) probably_damaging(0.975) TCGA-CR-7386-01 10 17164832 17164832 C G CUBN Missense_Mutation p.Q185H 0.21 deleterious(0.02) possibly_damaging(0.513) TCGA-CR-7386-01 10 30317105 30317105 C G KIAA1462 Missense_Mutation p.D658H 0.14 tolerated(0.36) benign(0.077) TCGA-CR-7386-01 10 30653930 30653932 TCC - AL161651.1 3'Flank 0.19 TCGA-CR-7386-01 10 74803657 74803657 C G P4HA1 Intron 0.11 TCGA-CR-7386-01 10 87487785 87487785 C G GRID1 Missense_Mutation p.E454Q 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-CR-7386-01 10 88946848 88946848 G A FAM35A Silent p.A733A 0.08 TCGA-CR-7386-01 11 116662530 116662530 G A APOA5 Missense_Mutation p.S16L 0.11 tolerated(0.11) benign(0.005) TCGA-CR-7386-01 11 119025544 119025544 C G ABCG4 Missense_Mutation p.S202C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CR-7386-01 11 124294739 124294739 G A OR8B4 Missense_Mutation p.T10I 0.12 deleterious_low_confidence(0.04) benign(0.005) TCGA-CR-7386-01 11 1579116 1579116 G A DUSP8 Silent p.I243I 0.17 TCGA-CR-7386-01 11 22301307 22301307 T C ANO5 Missense_Mutation p.L913P 0.19 deleterious_low_confidence(0) benign(0.424) TCGA-CR-7386-01 11 43436245 43436245 G C TTC17 Missense_Mutation p.E724Q 0.09 tolerated(0.53) benign(0.074) TCGA-CR-7386-01 11 4622349 4622349 G C TRIM68 Missense_Mutation p.S272C 0.11 deleterious(0.01) benign(0.013) TCGA-CR-7386-01 11 5080352 5080352 G A OR52E2 Missense_Mutation p.P169L 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-CR-7386-01 11 6048851 6048851 C G OR56A1 Missense_Mutation p.Q28H 0.06 tolerated(1) benign(0.365) TCGA-CR-7386-01 11 64521767 64521767 C G PYGM Silent p.L350L 0.07 TCGA-CR-7386-01 11 65829169 65829169 G A SF3B2 Missense_Mutation p.E598K 0.17 deleterious(0) probably_damaging(0.997) TCGA-CR-7386-01 11 66272236 66272236 C T DPP3 Missense_Mutation p.R678C 0.15 tolerated(0.19) benign(0.017) TCGA-CR-7386-01 11 66335085 66335085 G A CTSF Missense_Mutation p.R121W 0.08 deleterious(0) probably_damaging(0.971) TCGA-CR-7386-01 11 771117 771117 G C PDDC1 Intron 0.13 TCGA-CR-7386-01 12 102591364 102591364 G T PMCH Missense_Mutation p.S62Y 0.20 tolerated(0.53) benign(0.08) TCGA-CR-7386-01 12 105568149 105568151 TTG GGTTA APPL2 Nonsense_Mutation p.Q652* 0.13 TCGA-CR-7386-01 12 107245264 107245264 G A RIC8B Missense_Mutation p.E400K 0.09 deleterious(0) probably_damaging(0.999) TCGA-CR-7386-01 12 107245315 107245315 G A RIC8B Missense_Mutation p.D417N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7386-01 12 111956093 111956093 G A ATXN2 Silent p.F535F 0.17 TCGA-CR-7386-01 12 116429339 116429339 G C MED13L Missense_Mutation p.I1140M 0.20 deleterious(0) unknown(0) TCGA-CR-7386-01 12 3127708 3127708 C G TEAD4 Intron 0.09 TCGA-CR-7386-01 12 4459054 4459054 C T C12orf5 Missense_Mutation p.R88W 0.24 deleterious(0) probably_damaging(0.999) TCGA-CR-7386-01 12 53849783 53849783 G T PCBP2 Nonsense_Mutation p.E81* 0.08 TCGA-CR-7386-01 12 66786483 66786483 G T GRIP1 Missense_Mutation p.T696N 0.09 deleterious(0.02) probably_damaging(0.956) TCGA-CR-7386-01 12 70931979 70931979 C G PTPRB Missense_Mutation p.D1968H 0.14 deleterious(0) probably_damaging(0.969) TCGA-CR-7386-01 13 42873613 42873613 C T AKAP11 Missense_Mutation p.S244L 0.21 deleterious(0.02) possibly_damaging(0.662) TCGA-CR-7386-01 13 58208221 58208221 C T PCDH17 Missense_Mutation p.S514L 0.16 deleterious(0.02) possibly_damaging(0.888) TCGA-CR-7386-01 13 79209281 79209281 C T RNF219 Missense_Mutation p.R201Q 0.11 deleterious(0.03) possibly_damaging(0.676) TCGA-CR-7386-01 13 94938726 94938726 C A GPC6 Missense_Mutation p.S334Y 0.10 deleterious(0) possibly_damaging(0.908) TCGA-CR-7386-01 14 102476268 102476268 C T DYNC1H1 Silent p.Y2022Y 0.16 TCGA-CR-7386-01 14 102552205 102552205 G A HSP90AA1 Missense_Mutation p.S262F 0.22 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-CR-7386-01 14 21558641 21558641 G A ZNF219 3'UTR 0.22 TCGA-CR-7386-01 14 23523465 23523465 G A CDH24 Missense_Mutation p.P286L 0.16 tolerated(0.56) probably_damaging(0.92) TCGA-CR-7386-01 14 23897712 23897712 C T MYH7 Silent p.E525E 0.12 TCGA-CR-7386-01 14 36096897 36096897 G A RALGAPA1 Missense_Mutation p.P1580S 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7386-01 14 45432505 45432505 C G FAM179B Missense_Mutation p.S294C 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CR-7386-01 14 60750214 60750214 G C PPM1A Missense_Mutation p.E338Q 0.08 tolerated(0.1) benign(0.416) TCGA-CR-7386-01 14 76966231 76966231 C G ESRRB Missense_Mutation p.S441C 0.10 deleterious_low_confidence(0.04) benign(0.024) TCGA-CR-7386-01 14 78399825 78399825 C T ADCK1 3'UTR 0.15 TCGA-CR-7386-01 14 94417555 94417555 G C ASB2 Missense_Mutation p.L224V 0.09 deleterious(0) probably_damaging(0.996) TCGA-CR-7386-01 15 23012399 23012399 G A NIPA2 Missense_Mutation p.L110F 0.11 deleterious(0.04) benign(0.178) TCGA-CR-7386-01 15 34131070 34131070 G A RYR3 Missense_Mutation p.E4297K 0.17 benign(0.063) TCGA-CR-7386-01 15 48056145 48056145 G C SEMA6D Silent p.L282L 0.11 TCGA-CR-7386-01 15 90167507 90167507 G C TICRR Missense_Mutation p.K1322N 0.07 tolerated(0.15) possibly_damaging(0.576) TCGA-CR-7386-01 16 1962054 1962054 G A HS3ST6 Missense_Mutation p.S158F 0.14 deleterious(0) probably_damaging(1) TCGA-CR-7386-01 16 27751533 27751533 G C KIAA0556 Missense_Mutation p.E639Q 0.11 tolerated(0.12) benign(0.099) TCGA-CR-7386-01 16 30749246 30749246 G A SRCAP Missense_Mutation p.E2629K 0.16 unknown(0) TCGA-CR-7386-01 16 49672763 49672763 G A ZNF423 Silent p.L100L 0.13 TCGA-CR-7386-01 16 66562953 66562953 C T TK2 Silent p.L131L 0.17 TCGA-CR-7386-01 16 72984803 72984803 C T ZFHX3 Silent p.L927L 0.13 TCGA-CR-7386-01 16 85839561 85839561 G C COX4I1 Intron 0.14 TCGA-CR-7386-01 16 88870221 88870221 C T CDT1 5'UTR 0.09 TCGA-CR-7386-01 17 16594003 16594003 G C CCDC144A Missense_Mutation p.E97Q 0.26 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-CR-7386-01 17 39079161 39079161 G A KRT23 3'UTR 0.27 TCGA-CR-7386-01 17 39659616 39659616 G A KRT13 Silent p.L220L 0.15 TCGA-CR-7386-01 17 44895960 44895960 C G WNT3 Missense_Mutation p.E2Q 0.18 tolerated_low_confidence(0.53) benign(0.001) TCGA-CR-7386-01 17 4535217 4535217 G A ALOX15 Silent p.I592I 0.08 TCGA-CR-7386-01 17 61988231 61988231 G C CSHL1 Missense_Mutation p.Q22E 0.07 tolerated(0.06) benign(0.09) TCGA-CR-7386-01 17 71189326 71189326 G C COG1 Missense_Mutation p.E40Q 0.23 deleterious(0.02) probably_damaging(0.987) TCGA-CR-7386-01 17 72588192 72588192 G A C17orf77 Missense_Mutation p.E3K 0.12 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-CR-7386-01 17 7578217 7578218 GT - TP53 Frame_Shift_Del p.T211Ffs*4 0.24 TCGA-CR-7386-01 17 79663007 79663007 C T HGS Silent p.L457L 0.07 TCGA-CR-7386-01 18 14543165 14543165 G A POTEC 5'Flank 0.11 TCGA-CR-7386-01 18 31318686 31318686 G A ASXL3 Missense_Mutation p.E440K 0.21 benign(0.309) TCGA-CR-7386-01 18 3597106 3597106 C T DLGAP1 Intron 0.14 TCGA-CR-7386-01 18 52928732 52928732 G T TCF4 Missense_Mutation p.Q421K 0.15 deleterious(0.02) possibly_damaging(0.564) TCGA-CR-7386-01 18 56402442 56402442 G C MALT1 Missense_Mutation p.G495A 0.15 tolerated(0.05) probably_damaging(0.993) TCGA-CR-7386-01 19 10204163 10204163 C T ANGPTL6 Missense_Mutation p.D362N 0.16 tolerated(0.23) probably_damaging(1) TCGA-CR-7386-01 19 10415872 10415872 G A ZGLP1 Silent p.Y237Y 0.15 TCGA-CR-7386-01 19 11665079 11665079 G A ELOF1 Silent p.F28F 0.11 TCGA-CR-7386-01 19 14884783 14884783 C T EMR2 Missense_Mutation p.E56K 0.20 tolerated(0.1) benign(0.008) TCGA-CR-7386-01 19 17000712 17000712 G C F2RL3 Missense_Mutation p.E146D 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7386-01 19 35251156 35251156 G C ZNF599 Missense_Mutation p.Q184E 0.05 tolerated(0.31) benign(0.001) TCGA-CR-7386-01 19 35616221 35616221 G A LGI4 Missense_Mutation p.P497L 0.16 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-CR-7386-01 19 41522664 41522664 C G CYP2B6 Missense_Mutation p.L470V 0.23 tolerated(0.4) possibly_damaging(0.502) TCGA-CR-7386-01 19 42600050 42600050 T C POU2F2 Missense_Mutation p.Y232C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CR-7386-01 19 44471544 44471544 C G ZNF221 3'UTR 0.17 TCGA-CR-7386-01 19 47844899 47844899 C G C5AR2 Silent p.L281L 0.18 TCGA-CR-7386-01 19 49692319 49692319 C T TRPM4 Missense_Mutation p.R664C 0.18 deleterious(0) probably_damaging(0.943) TCGA-CR-7386-01 19 50042435 50042435 C T RCN3 Silent p.I226I 0.11 TCGA-CR-7386-01 19 52115366 52115366 C T SIGLEC5 3'UTR 0.31 TCGA-CR-7386-01 19 55450689 55450689 C T NLRP7 Missense_Mutation p.V500I 0.13 tolerated(0.2) benign(0.022) TCGA-CR-7386-01 19 58420667 58420667 T C ZNF417 Missense_Mutation p.R327G 0.04 tolerated(0.52) benign(0) TCGA-CR-7386-01 19 6697749 6697749 G A C3 Silent p.L833L 0.08 TCGA-CR-7386-01 19 8137035 8137035 G A FBN3 Missense_Mutation p.P2662L 0.14 tolerated(0.05) benign(0.004) TCGA-CR-7386-01 1 109714534 109714534 G A KIAA1324 Missense_Mutation p.E172K 0.19 deleterious(0.01) probably_damaging(0.924) TCGA-CR-7386-01 1 109815344 109815344 C A CELSR2 Missense_Mutation p.Q2713K 0.18 tolerated(0.9) benign(0.014) TCGA-CR-7386-01 1 113657144 113657144 C T LRIG2 Missense_Mutation p.R726C 0.12 deleterious(0) probably_damaging(0.978) TCGA-CR-7386-01 1 13501 13501 G A DDX11L1 RNA 0.05 TCGA-CR-7386-01 1 145367753 145367753 G - NBPF10 Frame_Shift_Del p.R3450Kfs*29 0.10 TCGA-CR-7386-01 1 150040002 150040002 G C VPS45 Missense_Mutation p.E30Q 0.07 tolerated(0.09) possibly_damaging(0.612) TCGA-CR-7386-01 1 152284258 152284258 G C FLG Missense_Mutation p.S1035C 0.06 probably_damaging(0.998) TCGA-CR-7386-01 1 155225970 155225970 C T SCAMP3 3'UTR 0.16 TCGA-CR-7386-01 1 160181434 160181434 G A PEA15 Missense_Mutation p.E34K 0.13 tolerated(0.28) benign(0.006) TCGA-CR-7386-01 1 16273491 16273491 G C ZBTB17 Silent p.L111L 0.15 TCGA-CR-7386-01 1 173744918 173744918 G C KLHL20 Missense_Mutation p.E525D 0.06 deleterious(0) probably_damaging(0.999) TCGA-CR-7386-01 1 175097823 175097823 G A TNN Missense_Mutation p.D1091N 0.11 tolerated(0.08) possibly_damaging(0.527) TCGA-CR-7386-01 1 176740227 176740227 C T PAPPA2 Silent p.L1542L 0.10 TCGA-CR-7386-01 1 183103932 183103932 G C LAMC1 Missense_Mutation p.K1329N 0.15 tolerated(0.08) possibly_damaging(0.791) TCGA-CR-7386-01 1 183106903 183106903 G C LAMC1 Missense_Mutation p.E1472Q 0.16 tolerated(0.1) probably_damaging(0.998) TCGA-CR-7386-01 1 186277112 186277112 C G PRG4 Missense_Mutation p.P754R 0.19 unknown(0) TCGA-CR-7386-01 1 200880920 200880920 G A C1orf106 Silent p.P433P 0.21 TCGA-CR-7386-01 1 22170783 22170783 C T HSPG2 Missense_Mutation p.G2825E 0.12 benign(0.011) TCGA-CR-7386-01 1 227268658 227268658 C A CDC42BPA Missense_Mutation p.D806Y 0.21 deleterious(0.04) benign(0.033) TCGA-CR-7386-01 1 24121288 24121288 C G LYPLA2 3'UTR 0.27 TCGA-CR-7386-01 1 28293631 28293631 C A XKR8 Missense_Mutation p.Q370K 0.12 tolerated(0.31) benign(0.019) TCGA-CR-7386-01 1 32165443 32165443 C T COL16A1 Silent p.L79L 0.14 TCGA-CR-7386-01 1 38345771 38345771 G A INPP5B Silent p.D509D 0.18 TCGA-CR-7386-01 1 44422118 44422118 C T IPO13 Silent p.G316G 0.21 TCGA-CR-7386-01 1 45480410 45480410 C A UROD Silent p.I259I 0.10 TCGA-CR-7386-01 1 45797203 45797203 G A MUTYH Silent p.F401F 0.21 TCGA-CR-7386-01 1 59042150 59042150 C T TACSTD2 Missense_Mutation p.E227K 0.17 deleterious(0) probably_damaging(0.998) TCGA-CR-7386-01 1 6738499 6738499 G A DNAJC11 Silent p.I77I 0.18 TCGA-CR-7386-01 1 9067373 9067373 C T SLC2A7 Silent p.G396G 0.07 TCGA-CR-7386-01 20 23586433 23586433 G C CST9 Silent p.L23L 0.12 TCGA-CR-7386-01 20 2378615 2378615 G A TGM6 Missense_Mutation p.G199S 0.08 tolerated(0.31) benign(0) TCGA-CR-7386-01 20 34302145 34302145 G A RBM39 Missense_Mutation p.T353I 0.10 deleterious(0) possibly_damaging(0.65) TCGA-CR-7386-01 20 36869389 36869389 C G KIAA1755 Missense_Mutation p.D382H 0.15 tolerated(0.25) benign(0.006) TCGA-CR-7386-01 20 57429096 57429096 C T GNAS Missense_Mutation p.A259V 0.15 deleterious_low_confidence(0) unknown(0) TCGA-CR-7386-01 20 9520219 9520219 C G PAK7 Missense_Mutation p.E684Q 0.15 deleterious(0) probably_damaging(0.993) TCGA-CR-7386-01 21 11038927 11038927 C T BAGE2 RNA 0.03 TCGA-CR-7386-01 21 34923116 34923116 C T SON Missense_Mutation p.H527Y 0.14 benign(0.152) TCGA-CR-7386-01 21 38525425 38525425 G C TTC3 Missense_Mutation p.R863T 0.16 tolerated(0.33) benign(0.199) TCGA-CR-7386-01 22 36678704 36678704 G C MYH9 3'UTR 0.10 TCGA-CR-7386-01 22 36708234 36708234 C T MYH9 Missense_Mutation p.E530K 0.16 probably_damaging(0.976) TCGA-CR-7386-01 2 108487257 108487257 C T RGPD4 Nonsense_Mutation p.Q933* 0.17 TCGA-CR-7386-01 2 166615260 166615260 G A GALNT3 Silent p.F396F 0.12 TCGA-CR-7386-01 2 169023849 169023849 G A STK39 Silent p.V130V 0.09 TCGA-CR-7386-01 2 170101261 170101261 C T LRP2 Silent p.K1124K 0.14 TCGA-CR-7386-01 2 175432655 175432655 C G WIPF1 Missense_Mutation p.G426R 0.13 deleterious(0) probably_damaging(0.997) TCGA-CR-7386-01 2 179414566 179414566 C T TTN Missense_Mutation p.R30628K 0.04 TCGA-CR-7386-01 2 201534448 201534448 G A AOX1 Missense_Mutation p.D1317N 0.13 deleterious(0.01) probably_damaging(1) TCGA-CR-7386-01 2 210658580 210658580 C T UNC80 Missense_Mutation p.S312F 0.11 benign(0.078) TCGA-CR-7386-01 2 219204763 219204763 C A PNKD Missense_Mutation p.L122I 0.17 tolerated(0.46) benign(0.057) TCGA-CR-7386-01 2 233405103 233405103 G A CHRNG Missense_Mutation p.E70K 0.17 deleterious(0) probably_damaging(0.989) TCGA-CR-7386-01 2 235949960 235949960 G A SH3BP4 Missense_Mutation p.E183K 0.20 tolerated(0.55) benign(0.027) TCGA-CR-7386-01 2 39893244 39893244 G C TMEM178A Missense_Mutation p.E44Q 0.16 tolerated(0.09) benign(0.277) TCGA-CR-7386-01 2 55546086 55546086 C G CCDC88A Missense_Mutation p.E1072Q 0.07 deleterious(0.02) possibly_damaging(0.881) TCGA-CR-7386-01 3 120115681 120115681 C G FSTL1 3'UTR 0.13 TCGA-CR-7386-01 3 133368367 133368367 G C TOPBP1 Nonsense_Mutation p.S455* 0.21 TCGA-CR-7386-01 3 134911464 134911464 G C EPHB1 Missense_Mutation p.K643N 0.21 deleterious(0) possibly_damaging(0.835) TCGA-CR-7386-01 3 138187688 138187688 G A ESYT3 Missense_Mutation p.E467K 0.11 tolerated(0.37) probably_damaging(0.998) TCGA-CR-7386-01 3 142241603 142241603 G A ATR Silent p.S1411S 0.25 TCGA-CR-7386-01 3 142285073 142285073 G C ATR Missense_Mutation p.S61C 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.678) TCGA-CR-7386-01 3 153202424 153202424 C G C3orf79 Missense_Mutation p.L27V 0.07 tolerated_low_confidence(0.1) possibly_damaging(0.567) TCGA-CR-7386-01 3 155200325 155200325 G A PLCH1 Silent p.L1172L 0.17 TCGA-CR-7386-01 3 182554386 182554386 C G ATP11B Intron 0.18 TCGA-CR-7386-01 3 185882740 185882740 G A DGKG Silent p.T721T 0.20 TCGA-CR-7386-01 3 186358276 186358276 C A FETUB Silent p.L9L 0.27 TCGA-CR-7386-01 3 186793540 186793540 C T ST6GAL1 Silent p.I390I 0.07 TCGA-CR-7386-01 3 186917561 186917561 C G RTP1 Missense_Mutation p.C165W 0.40 deleterious(0) probably_damaging(0.994) TCGA-CR-7386-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.08 tolerated(0.19) possibly_damaging(0.569) TCGA-CR-7386-01 3 197665630 197665630 C A IQCG Nonsense_Mutation p.E102* 0.12 TCGA-CR-7386-01 4 111397596 111397596 C G ENPEP Missense_Mutation p.S9C 0.13 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-CR-7386-01 4 114158298 114158298 G C ANK2 Missense_Mutation p.Q213H 0.08 probably_damaging(0.999) TCGA-CR-7386-01 4 122068285 122068285 T C TNIP3 Silent p.R295R 0.09 TCGA-CR-7386-01 4 128842692 128842692 C A MFSD8 Missense_Mutation p.G446V 0.10 deleterious(0) probably_damaging(1) TCGA-CR-7386-01 4 158057783 158057783 C T GLRB Missense_Mutation p.H154Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-CR-7386-01 4 185616385 185616385 G C CENPU 3'UTR 0.13 TCGA-CR-7386-01 4 187532590 187532590 G C FAT1 Nonsense_Mutation p.S3268* 0.19 TCGA-CR-7386-01 4 187539227 187539227 G C FAT1 Nonsense_Mutation p.S2838* 0.11 TCGA-CR-7386-01 4 187629184 187629184 G A FAT1 Nonsense_Mutation p.Q600* 0.12 TCGA-CR-7386-01 4 20884283 20884283 G A KCNIP4 Silent p.L37L 0.08 TCGA-CR-7386-01 4 2242704 2242704 G C HAUS3 5'UTR 0.24 TCGA-CR-7386-01 4 3768939 3768939 C T ADRA2C Silent p.C202C 0.11 TCGA-CR-7386-01 4 39276495 39276495 C T WDR19 Silent p.F1211F 0.07 TCGA-CR-7386-01 4 44700691 44700691 C G GUF1 Missense_Mutation p.S668C 0.24 deleterious(0) benign(0.371) TCGA-CR-7386-01 4 71628306 71628306 G C RUFY3 Missense_Mutation p.L83F 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7386-01 4 80328806 80328806 G C GK2 Missense_Mutation p.I183M 0.05 deleterious(0.04) probably_damaging(0.97) TCGA-CR-7386-01 4 83838784 83838784 G C THAP9 Silent p.L473L 0.16 TCGA-CR-7386-01 4 88766888 88766888 G A MEPE Missense_Mutation p.E290K 0.13 tolerated(0.37) benign(0.388) TCGA-CR-7386-01 4 89652580 89652580 C G FAM13A Splice_Site p.X948_splice 0.11 TCGA-CR-7386-01 4 957073 957073 C T DGKQ Silent p.A580A 0.20 TCGA-CR-7386-01 5 10973441 10973441 C G CTNND2 3'UTR 0.30 TCGA-CR-7386-01 5 112256898 112256898 G C REEP5 Silent p.L58L 0.12 TCGA-CR-7386-01 5 118832266 118832266 G C HSD17B4 Silent p.L324L 0.06 TCGA-CR-7386-01 5 131930643 131930643 G A RAD50 Missense_Mutation p.E626K 0.16 deleterious(0.02) possibly_damaging(0.629) TCGA-CR-7386-01 5 13841896 13841896 G C DNAH5 Missense_Mutation p.Q1797E 0.12 benign(0.001) TCGA-CR-7386-01 5 13883188 13883188 G A DNAH5 Missense_Mutation p.S1000F 0.11 possibly_damaging(0.485) TCGA-CR-7386-01 5 140176795 140176795 C T PCDHA2 Missense_Mutation p.S749F 0.19 deleterious_low_confidence(0) benign(0.263) TCGA-CR-7386-01 5 140741419 140741419 G A PCDHGB2 Missense_Mutation p.A573T 0.15 tolerated(0.39) possibly_damaging(0.754) TCGA-CR-7386-01 5 141019745 141019745 G A RELL2 Silent p.G254G 0.06 TCGA-CR-7386-01 5 146750271 146750271 G C STK32A Missense_Mutation p.E239Q 0.06 tolerated(0.41) benign(0.027) TCGA-CR-7386-01 5 36122518 36122518 C A LMBRD2 Missense_Mutation p.Q328H 0.09 tolerated(0.25) benign(0.004) TCGA-CR-7386-01 5 40747077 40747077 G C TTC33 Nonsense_Mutation p.S15* 0.11 TCGA-CR-7386-01 5 42808335 42808335 G A SEPP1 Missense_Mutation p.P41S 0.14 deleterious(0) possibly_damaging(0.88) TCGA-CR-7386-01 5 72798854 72798854 G C BTF3 Silent p.L143L 0.14 TCGA-CR-7386-01 6 10529667 10529667 G A GCNT2 Missense_Mutation p.E175K 0.35 tolerated(1) benign(0.001) TCGA-CR-7386-01 6 111696128 111696128 C T REV3L Missense_Mutation p.E1144K 0.11 tolerated(0.35) benign(0.002) TCGA-CR-7386-01 6 111880600 111880600 G C TRAF3IP2 3'UTR 0.20 TCGA-CR-7386-01 6 152557387 152557387 C G SYNE1 Missense_Mutation p.D6751H 0.09 possibly_damaging(0.67) TCGA-CR-7386-01 6 158927728 158927728 G A TULP4 3'UTR 0.15 TCGA-CR-7386-01 6 167550802 167550802 G A CCR6 Missense_Mutation p.E362K 0.10 deleterious(0.05) benign(0.266) TCGA-CR-7386-01 6 29079743 29079743 C G OR2J3 Missense_Mutation p.L26V 0.22 deleterious(0.03) benign(0.17) TCGA-CR-7386-01 6 30671732 30671732 G C MDC1 Missense_Mutation p.S1743C 0.21 deleterious(0.03) probably_damaging(0.916) TCGA-CR-7386-01 6 31106763 31106763 C A PSORS1C2 Missense_Mutation p.C14F 0.16 deleterious_low_confidence(0.01) benign(0.1) TCGA-CR-7386-01 6 56374648 56374648 G A DST Silent p.I3645I 0.10 TCGA-CR-7386-01 6 83810518 83810518 G C DOPEY1 Missense_Mutation p.G78A 0.12 deleterious(0) possibly_damaging(0.863) TCGA-CR-7386-01 6 88251661 88251661 G C RARS2 Missense_Mutation p.S196C 0.15 deleterious(0.05) benign(0.049) TCGA-CR-7386-01 7 106826264 106826264 C T HBP1 Silent p.I139I 0.12 TCGA-CR-7386-01 7 127961459 127961459 G C RBM28 Missense_Mutation p.Q475E 0.11 tolerated(0.07) probably_damaging(0.977) TCGA-CR-7386-01 7 146536831 146536831 C T CNTNAP2 Silent p.S79S 0.18 TCGA-CR-7386-01 7 147869376 147869376 C T CNTNAP2 Missense_Mutation p.S939F 0.13 deleterious(0.02) possibly_damaging(0.857) TCGA-CR-7386-01 7 31683300 31683300 G A CCDC129 Silent p.L798L 0.17 TCGA-CR-7386-01 7 43531746 43531746 C G HECW1 Missense_Mutation p.R1103G 0.09 deleterious(0.04) benign(0.018) TCGA-CR-7386-01 7 48092304 48092304 C G C7orf57 Missense_Mutation p.Q205E 0.05 deleterious(0.01) benign(0.228) TCGA-CR-7386-01 7 76924175 76924175 G C CCDC146 Missense_Mutation p.E954Q 0.12 deleterious(0.02) probably_damaging(0.96) TCGA-CR-7386-01 7 86468876 86468876 C A GRM3 Missense_Mutation p.F682L 0.20 tolerated(0.11) probably_damaging(0.968) TCGA-CR-7386-01 7 89939442 89939442 C T C7orf63 Silent p.L906L 0.07 TCGA-CR-7386-01 7 99821206 99821206 C T GATS 3'UTR 0.18 TCGA-CR-7386-01 8 122626424 122626424 C T HAS2 Silent p.T528T 0.14 TCGA-CR-7386-01 8 144899260 144899260 C T PUF60 Silent p.V400V 0.09 TCGA-CR-7386-01 8 22167484 22167484 G A PIWIL2 Missense_Mutation p.R566H 0.11 deleterious(0.03) probably_damaging(0.909) TCGA-CR-7386-01 8 42038171 42038171 G A PLAT Nonsense_Mutation p.Q308* 0.18 TCGA-CR-7386-01 8 48842538 48842538 C A PRKDC Nonsense_Mutation p.E643* 0.05 TCGA-CR-7386-01 8 54866838 54866838 G A RGS20 Missense_Mutation p.E316K 0.11 deleterious(0) possibly_damaging(0.554) TCGA-CR-7386-01 8 92972554 92972554 C T RUNX1T1 Silent p.G588G 0.15 TCGA-CR-7386-01 9 115422154 115422154 C T KIAA1958 Silent p.F652F 0.15 TCGA-CR-7386-01 9 139639631 139639631 C T LCN6 Missense_Mutation p.E135K 0.16 deleterious(0.01) benign(0.345) TCGA-CR-7386-01 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.28 TCGA-CR-7386-01 9 35698089 35698089 C G TLN1 Missense_Mutation p.E2484D 0.14 tolerated(0.58) benign(0) TCGA-CR-7386-01 9 5921788 5921788 G C KIAA2026 Missense_Mutation p.S1403C 0.15 deleterious(0.02) probably_damaging(0.963) TCGA-CR-7386-01 X 100910650 100910650 C G ARMCX2 3'UTR 0.35 TCGA-CR-7386-01 X 107169397 107169397 G A MID2 Silent p.E557E 0.28 TCGA-CR-7386-01 X 148059934 148059934 G A AFF2 Silent p.L1173L 0.16 TCGA-CR-7386-01 X 153735753 153735753 C T FAM3A Missense_Mutation p.D152N 0.27 deleterious(0) probably_damaging(0.994) TCGA-CR-7386-01 X 27999311 27999311 C G DCAF8L1 Silent p.S47S 0.23 TCGA-CR-7386-01 X 37587032 37587032 G C XK Missense_Mutation p.E218Q 0.31 deleterious(0) probably_damaging(1) TCGA-CR-7386-01 X 50377069 50377069 G A SHROOM4 Silent p.L668L 0.30 TCGA-CR-7386-01 X 50377082 50377082 G A SHROOM4 Missense_Mutation p.S664F 0.32 deleterious(0) probably_damaging(0.979) TCGA-CR-7386-01 X 50377856 50377856 G C SHROOM4 Missense_Mutation p.T406R 0.25 deleterious(0.02) benign(0.303) TCGA-CR-7386-01 X 77243873 77243873 G A ATP7A Missense_Mutation p.D86N 0.30 tolerated(0.33) benign(0.012) TCGA-CR-7388-01 10 112269778 112269778 A T DUSP5 Missense_Mutation p.D250V 0.11 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 10 116698023 116698023 C G TRUB1 Missense_Mutation p.S4C 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-CR-7388-01 10 116853721 116853721 C A ATRNL1 Nonsense_Mutation p.S71* 0.23 TCGA-CR-7388-01 10 118196325 118196325 A T PNLIPRP3 Missense_Mutation p.K51M 0.14 deleterious(0.02) possibly_damaging(0.566) TCGA-CR-7388-01 10 120809438 120809438 G A EIF3A Nonsense_Mutation p.Q845* 0.06 TCGA-CR-7388-01 10 121618670 121618670 G T MCMBP Silent p.P56P 0.26 TCGA-CR-7388-01 10 129179577 129179577 G C DOCK1 Missense_Mutation p.C1230S 0.35 tolerated(0.13) benign(0.427) TCGA-CR-7388-01 10 129906158 129906158 G C MKI67 Missense_Mutation p.P1316A 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7388-01 10 134598414 134598414 G C NKX6-2 3'UTR 0.15 TCGA-CR-7388-01 10 15686196 15686196 G A ITGA8 Missense_Mutation p.A411V 0.39 deleterious(0) possibly_damaging(0.9) TCGA-CR-7388-01 10 18885189 18885189 C T NSUN6 Missense_Mutation p.C242Y 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 10 32101646 32101646 C G ARHGAP12 Missense_Mutation p.G647A 0.11 deleterious(0) benign(0.207) TCGA-CR-7388-01 10 49633957 49633957 G C MAPK8 Missense_Mutation p.E239Q 0.07 tolerated(0.1) benign(0.242) TCGA-CR-7388-01 10 53458085 53458085 C A CSTF2T Missense_Mutation p.G409C 0.18 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-CR-7388-01 10 61592413 61592413 T A CCDC6 Splice_Site p.X152_splice 0.17 TCGA-CR-7388-01 10 61666097 61666097 G C CCDC6 Missense_Mutation p.S29W 0.12 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-CR-7388-01 10 68687295 68687295 C G LRRTM3 Silent p.L207L 0.07 TCGA-CR-7388-01 10 69785429 69785429 C A HERC4 Missense_Mutation p.G261V 0.15 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 10 70164518 70164518 G C RUFY2 Missense_Mutation p.L65V 0.17 deleterious(0.03) benign(0.432) TCGA-CR-7388-01 10 75156946 75156946 C A ANXA7 Missense_Mutation p.G116C 0.18 tolerated(0.1) benign(0.005) TCGA-CR-7388-01 10 79784811 79784811 G A POLR3A Silent p.Y136Y 0.18 TCGA-CR-7388-01 10 85908523 85908523 G A GHITM Missense_Mutation p.G174E 0.09 deleterious(0) possibly_damaging(0.905) TCGA-CR-7388-01 10 85991723 85991723 C G LRIT1 Missense_Mutation p.G611A 0.18 tolerated(1) benign(0.012) TCGA-CR-7388-01 10 88416025 88416025 G - OPN4 Frame_Shift_Del p.G87Afs*3 0.16 TCGA-CR-7388-01 10 98741788 98741788 A T C10orf12 Missense_Mutation p.H214L 0.17 tolerated(0.09) benign(0.009) TCGA-CR-7388-01 11 122931384 122931384 C G HSPA8 Missense_Mutation p.E110Q 0.09 deleterious_low_confidence(0.01) benign(0.195) TCGA-CR-7388-01 11 124440565 124440565 A T OR8A1 Missense_Mutation p.M201L 0.21 tolerated(1) benign(0.042) TCGA-CR-7388-01 11 17793800 17793800 A T KCNC1 Missense_Mutation p.I387F 0.29 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 11 31086167 31086167 G T DCDC1 Missense_Mutation p.Q814K 0.13 tolerated_low_confidence(0.11) possibly_damaging(0.76) TCGA-CR-7388-01 11 46564192 46564192 G A AMBRA1 Nonsense_Mutation p.Q369* 0.17 TCGA-CR-7388-01 11 48346907 48346907 C T OR4C3 Silent p.L139L 0.15 TCGA-CR-7388-01 11 5254027 5254027 A C HBD 3'Flank 0.35 TCGA-CR-7388-01 11 549902 549902 G T LRRC56 Missense_Mutation p.R109S 0.27 deleterious(0) probably_damaging(0.928) TCGA-CR-7388-01 11 55371370 55371370 C A OR4C11 Silent p.L160L 0.22 TCGA-CR-7388-01 11 55419152 55419152 G T OR4S2 Missense_Mutation p.R258L 0.16 deleterious(0) possibly_damaging(0.495) TCGA-CR-7388-01 11 55541290 55541290 T G OR5D13 Missense_Mutation p.V126G 0.17 deleterious(0) probably_damaging(0.931) TCGA-CR-7388-01 11 55735663 55735663 A T OR10AG1 Missense_Mutation p.C93S 0.14 deleterious(0.04) benign(0.098) TCGA-CR-7388-01 11 55873233 55873233 T A OR8H2 Missense_Mutation p.S239T 0.21 deleterious(0.01) probably_damaging(0.967) TCGA-CR-7388-01 11 56000129 56000129 C A OR5T2 Missense_Mutation p.R178I 0.19 deleterious(0) probably_damaging(0.964) TCGA-CR-7388-01 11 56019731 56019731 T A OR5T3 Missense_Mutation p.M19K 0.11 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-CR-7388-01 11 56086553 56086553 G T OR8K3 Missense_Mutation p.M257I 0.12 tolerated_low_confidence(0.08) benign(0.214) TCGA-CR-7388-01 11 5656091 5656091 G C TRIM34 Missense_Mutation p.Q250H 0.26 deleterious(0.02) probably_damaging(0.977) TCGA-CR-7388-01 11 57077033 57077033 C A TNKS1BP1 Missense_Mutation p.S1051I 0.28 tolerated(0.2) benign(0.047) TCGA-CR-7388-01 11 5717502 5717502 A T TRIM22 Missense_Mutation p.T14S 0.25 tolerated(0.06) possibly_damaging(0.646) TCGA-CR-7388-01 11 57947762 57947762 C A OR9Q1 Silent p.P282P 0.31 TCGA-CR-7388-01 11 57996040 57996040 G T OR10Q1 Missense_Mutation p.A103D 0.19 deleterious(0) benign(0.273) TCGA-CR-7388-01 11 57996165 57996165 G C OR10Q1 Silent p.T61T 0.12 TCGA-CR-7388-01 11 59190214 59190214 G T OR5A2 Missense_Mutation p.D71E 0.23 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 11 6129218 6129218 C A OR56B4 Silent p.G70G 0.22 TCGA-CR-7388-01 11 62293302 62293302 C T AHNAK Missense_Mutation p.D2863N 0.09 benign(0.155) TCGA-CR-7388-01 11 6239802 6239802 C T FAM160A2 Missense_Mutation p.R488K 0.30 tolerated(0.92) benign(0.002) TCGA-CR-7388-01 11 65617935 65617935 G A SNX32 Silent p.A136A 0.09 TCGA-CR-7388-01 11 65793167 65793167 C A CATSPER1 Missense_Mutation p.R228S 0.28 tolerated(0.23) benign(0.026) TCGA-CR-7388-01 11 67812468 67812468 G T TCIRG1 Missense_Mutation p.R355L 0.16 tolerated(0.08) benign(0.015) TCGA-CR-7388-01 11 69063361 69063361 G T MYEOV Silent p.G148G 0.05 TCGA-CR-7388-01 11 71277262 71277262 C T KRTAP5-10 3'UTR 0.09 TCGA-CR-7388-01 11 722485 722485 G A EPS8L2 Missense_Mutation p.G382S 0.22 tolerated(0.11) probably_damaging(0.998) TCGA-CR-7388-01 11 7437333 7437333 C A SYT9 Missense_Mutation p.L369M 0.33 tolerated(0.14) probably_damaging(0.98) TCGA-CR-7388-01 11 78413272 78413272 G T TENM4 Silent p.A1462A 0.24 TCGA-CR-7388-01 11 85375815 85375815 C G CREBZF Silent p.L35L 0.08 TCGA-CR-7388-01 11 8724239 8724239 G A ST5 Missense_Mutation p.S867L 0.16 deleterious(0.02) probably_damaging(0.984) TCGA-CR-7388-01 11 88027277 88027277 C A CTSC Missense_Mutation p.G430V 0.14 deleterious(0) probably_damaging(0.996) TCGA-CR-7388-01 11 88911881 88911881 G C TYR Missense_Mutation p.G254R 0.27 deleterious(0) probably_damaging(0.991) TCGA-CR-7388-01 11 89774538 89774538 C A TRIM49C Silent p.T393T 0.14 TCGA-CR-7388-01 11 9090930 9090930 C T SCUBE2 Silent p.Q210Q 0.23 TCGA-CR-7388-01 11 92523337 92523337 G T FAT3 Nonsense_Mutation p.E1522* 0.27 TCGA-CR-7388-01 11 93088643 93088643 C T CCDC67 Nonsense_Mutation p.R46* 0.23 TCGA-CR-7388-01 12 101017491 101017491 G T GAS2L3 Missense_Mutation p.S303I 0.13 deleterious(0) benign(0.267) TCGA-CR-7388-01 12 103699898 103699898 C T C12orf42 Nonsense_Mutation p.W162* 0.22 TCGA-CR-7388-01 12 103988252 103988252 C T STAB2 Missense_Mutation p.R99W 0.17 deleterious(0) benign(0.296) TCGA-CR-7388-01 12 104335647 104335647 A T HSP90B1 Missense_Mutation p.E449V 0.22 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 12 105151344 105151344 C G CHST11 Missense_Mutation p.D274E 0.11 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 12 112229161 112229161 G T ALDH2 Missense_Mutation p.A245S 0.26 deleterious(0.01) probably_damaging(0.974) TCGA-CR-7388-01 12 112846080 112846080 C G RPL6 Missense_Mutation p.K100N 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7388-01 12 113614713 113614713 C A DDX54 Silent p.V228V 0.22 TCGA-CR-7388-01 12 114261089 114261089 C G RBM19 Missense_Mutation p.E941D 0.09 tolerated(0.91) benign(0.004) TCGA-CR-7388-01 12 114839711 114839711 G C TBX5 Missense_Mutation p.I54M 0.12 deleterious(0.02) possibly_damaging(0.485) TCGA-CR-7388-01 12 120135524 120135524 T A CIT Missense_Mutation p.K1941M 0.22 deleterious(0) probably_damaging(0.987) TCGA-CR-7388-01 12 124221632 124221632 G A ATP6V0A2 Silent p.L284L 0.09 TCGA-CR-7388-01 12 129283841 129283841 G C SLC15A4 Missense_Mutation p.I512M 0.22 deleterious(0.03) benign(0.045) TCGA-CR-7388-01 12 129558977 129558977 C G TMEM132D Missense_Mutation p.D915H 0.14 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 12 130912810 130912810 C A RIMBP2 Nonsense_Mutation p.E759* 0.14 TCGA-CR-7388-01 12 133327233 133327233 C T ANKLE2 Silent p.L281L 0.13 TCGA-CR-7388-01 12 14766002 14766002 C T GUCY2C 3'UTR 0.11 TCGA-CR-7388-01 12 21970162 21970162 C A ABCC9 Missense_Mutation p.S1284I 0.11 tolerated(0.24) benign(0.325) TCGA-CR-7388-01 12 21970227 21970227 C A ABCC9 Missense_Mutation p.L1262F 0.14 deleterious(0) possibly_damaging(0.758) TCGA-CR-7388-01 12 2602389 2602389 C T CACNA1C Missense_Mutation p.A317V 0.21 deleterious(0.02) possibly_damaging(0.674) TCGA-CR-7388-01 12 27788028 27788028 G C PPFIBP1 Missense_Mutation p.E84Q 0.22 deleterious(0.01) possibly_damaging(0.499) TCGA-CR-7388-01 12 32260340 32260340 G C BICD1 Silent p.T25T 0.29 TCGA-CR-7388-01 12 32793299 32793299 G T FGD4 Silent p.L711L 0.16 TCGA-CR-7388-01 12 40697896 40697896 G C LRRK2 Missense_Mutation p.R1246T 0.08 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 12 41327310 41327310 G A CNTN1 Missense_Mutation p.V251I 0.25 tolerated(0.13) benign(0) TCGA-CR-7388-01 12 43862412 43862412 A G ADAMTS20 Missense_Mutation p.L405P 0.27 deleterious(0) possibly_damaging(0.601) TCGA-CR-7388-01 12 5154004 5154004 G A KCNA5 Missense_Mutation p.E231K 0.15 tolerated(0.21) benign(0.029) TCGA-CR-7388-01 12 51584173 51584173 T A POU6F1 Nonsense_Mutation p.K255* 0.17 TCGA-CR-7388-01 12 52200604 52200604 C G SCN8A Missense_Mutation p.D1778E 0.10 tolerated(1) benign(0.016) TCGA-CR-7388-01 12 53202496 53202496 C G KRT4 Missense_Mutation p.E325Q 0.09 deleterious(0) probably_damaging(0.969) TCGA-CR-7388-01 12 54367536 54367536 T G HOXC11 Missense_Mutation p.C171G 0.13 tolerated(0.46) possibly_damaging(0.885) TCGA-CR-7388-01 12 56827894 56827894 C T TIMELESS Missense_Mutation p.E21K 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-CR-7388-01 12 57843393 57843393 C T INHBC Missense_Mutation p.A216V 0.19 tolerated(0.08) possibly_damaging(0.493) TCGA-CR-7388-01 12 57929539 57929539 C T DCTN2 Silent p.K70K 0.15 TCGA-CR-7388-01 12 60169100 60169100 T A SLC16A7 Missense_Mutation p.L342I 0.05 tolerated(0.53) benign(0.006) TCGA-CR-7388-01 12 63543842 63543842 C A AVPR1A Missense_Mutation p.A259S 0.18 tolerated(0.46) benign(0.014) TCGA-CR-7388-01 12 69265656 69265656 C G CPM Silent p.L113L 0.14 TCGA-CR-7388-01 12 6939088 6939088 G C GPR162 3'Flank 0.22 TCGA-CR-7388-01 12 6939090 6939090 A T GPR162 3'Flank 0.22 TCGA-CR-7388-01 12 70049561 70049561 C T BEST3 Nonsense_Mutation p.W378* 0.25 TCGA-CR-7388-01 12 7047658 7047658 G C ATN1 Missense_Mutation p.E844D 0.14 benign(0.259) TCGA-CR-7388-01 12 70954649 70954649 A T PTPRB Missense_Mutation p.W1412R 0.15 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 12 7177304 7177304 G T C1S Silent p.T472T 0.19 TCGA-CR-7388-01 12 72969167 72969167 A T TRHDE Missense_Mutation p.E710V 0.14 deleterious(0.04) benign(0.147) TCGA-CR-7388-01 12 75895584 75895584 C T KRR1 Missense_Mutation p.E308K 0.16 tolerated(0.08) benign(0.005) TCGA-CR-7388-01 12 78562546 78562546 T A NAV3 Silent p.L1627L 0.20 TCGA-CR-7388-01 12 81768487 81768487 G T PPFIA2 Missense_Mutation p.Q398K 0.29 deleterious(0) probably_damaging(0.967) TCGA-CR-7388-01 12 8211440 8211440 G A C3AR1 Nonsense_Mutation p.Q448* 0.17 TCGA-CR-7388-01 12 83359583 83359583 T A TMTC2 Intron 0.14 TCGA-CR-7388-01 12 86373115 86373115 T G MGAT4C Silent p.T463T 0.14 TCGA-CR-7388-01 12 93170693 93170693 C G EEA1 Missense_Mutation p.R1347T 0.07 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 12 94694716 94694716 G A PLXNC1 Silent p.L1423L 0.21 TCGA-CR-7388-01 12 99007959 99007959 C G IKBIP Missense_Mutation p.D153H 0.24 deleterious(0.03) benign(0.38) TCGA-CR-7388-01 12 994586 994586 G C WNK1 Missense_Mutation p.G1539A 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.467) TCGA-CR-7388-01 13 101944439 101944439 A G NALCN Missense_Mutation p.F317L 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 13 103282533 103282533 C G TPP2 Missense_Mutation p.S411C 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 13 103443611 103443611 C A KDELC1 Missense_Mutation p.G281V 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-CR-7388-01 13 113208415 113208415 T C TUBGCP3 Missense_Mutation p.T308A 0.41 tolerated(0.42) benign(0.003) TCGA-CR-7388-01 13 113536508 113536508 G A ATP11A 3'UTR 0.11 TCGA-CR-7388-01 13 25671507 25671507 G A PABPC3 Missense_Mutation p.A391T 0.18 tolerated(0.25) benign(0.064) TCGA-CR-7388-01 13 26402328 26402328 G T ATP8A2 Missense_Mutation p.V918L 0.17 deleterious(0.02) possibly_damaging(0.779) TCGA-CR-7388-01 13 27254257 27254257 G T WASF3 Intron 0.25 TCGA-CR-7388-01 13 28624246 28624246 C A FLT3 Missense_Mutation p.R243M 0.16 deleterious(0.01) benign(0.158) TCGA-CR-7388-01 13 32813472 32813472 G A FRY Missense_Mutation p.E2168K 0.09 tolerated(0.08) possibly_damaging(0.806) TCGA-CR-7388-01 13 33271024 33271024 G T PDS5B Missense_Mutation p.V529L 0.27 tolerated(0.35) benign(0.041) TCGA-CR-7388-01 13 36744767 36744767 T G SOHLH2 Silent p.S463S 0.11 TCGA-CR-7388-01 13 37269082 37269082 A T SERTM1 5'UTR 0.31 TCGA-CR-7388-01 13 37622712 37622712 C G SUPT20H Missense_Mutation p.D10H 0.14 deleterious(0) probably_damaging(0.982) TCGA-CR-7388-01 13 38143521 38143521 C T POSTN Splice_Site p.X783_splice 0.14 TCGA-CR-7388-01 13 46542018 46542018 C T ZC3H13 Silent p.E1314E 0.14 TCGA-CR-7388-01 13 67801710 67801710 C T PCDH9 Missense_Mutation p.R288Q 0.15 tolerated(0.2) benign(0.004) TCGA-CR-7388-01 13 70456497 70456497 C A KLHL1 Missense_Mutation p.W382L 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-CR-7388-01 13 75930347 75930348 - C TBC1D4 Frame_Shift_Ins p.E404Gfs*8 0.26 TCGA-CR-7388-01 13 86369101 86369101 C A SLITRK6 Nonsense_Mutation p.E515* 0.11 TCGA-CR-7388-01 13 88329558 88329558 C A SLITRK5 Missense_Mutation p.P639T 0.15 tolerated(0.22) benign(0.001) TCGA-CR-7388-01 14 102500686 102500686 G C DYNC1H1 Missense_Mutation p.E3551Q 0.08 probably_damaging(0.986) TCGA-CR-7388-01 14 106321086 106321086 G A IGHM Silent p.F301F 0.15 TCGA-CR-7388-01 14 21464897 21464897 G C METTL17 Missense_Mutation p.W431S 0.14 deleterious_low_confidence(0) benign(0) TCGA-CR-7388-01 14 22564625 22564625 C T TRDV1 Nonsense_Mutation p.Q26* 0.13 TCGA-CR-7388-01 14 24034829 24034829 C T AP1G2 Missense_Mutation p.D243N 0.29 deleterious(0.01) benign(0.083) TCGA-CR-7388-01 14 24659669 24659669 C G TM9SF1 Missense_Mutation p.K448N 0.23 tolerated(0.23) benign(0.088) TCGA-CR-7388-01 14 30066890 30066890 G A PRKD1 Silent p.P747P 0.37 TCGA-CR-7388-01 14 36988380 36988380 G A NKX2-1 Silent p.H91H 0.61 TCGA-CR-7388-01 14 44976217 44976217 G C FSCB 5'UTR 0.18 TCGA-CR-7388-01 14 45605509 45605509 G C FANCM Missense_Mutation p.R92P 0.19 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 14 50088061 50088061 G A MGAT2 Nonsense_Mutation p.W25* 0.16 TCGA-CR-7388-01 14 51375033 51375033 C A PYGL Nonsense_Mutation p.E779* 0.25 TCGA-CR-7388-01 14 51390809 51390809 C G PYGL Missense_Mutation p.A180P 0.13 tolerated(1) probably_damaging(0.999) TCGA-CR-7388-01 14 54417231 54417231 C G BMP4 Missense_Mutation p.G249A 0.26 tolerated(0.56) benign(0.032) TCGA-CR-7388-01 14 59946014 59946014 G A L3HYPDH Silent p.G188G 0.21 TCGA-CR-7388-01 14 60903528 60903528 G A C14orf39 3'UTR 0.09 TCGA-CR-7388-01 14 63511873 63511873 G A KCNH5 Missense_Mutation p.P11L 0.10 deleterious(0.02) benign(0.02) TCGA-CR-7388-01 14 64006301 64006301 G C PPP2R5E Missense_Mutation p.Q35E 0.08 deleterious(0) benign(0.015) TCGA-CR-7388-01 14 65041172 65041172 G C PPP1R36 Splice_Site p.X178_splice 0.10 TCGA-CR-7388-01 14 65261194 65261194 C T SPTB Missense_Mutation p.E596K 0.09 tolerated(0.05) benign(0.108) TCGA-CR-7388-01 14 71495434 71495434 G C PCNX Missense_Mutation p.A1162P 0.48 deleterious(0.02) possibly_damaging(0.772) TCGA-CR-7388-01 14 74759945 74759945 C A ABCD4 Silent p.G242G 0.17 TCGA-CR-7388-01 14 75248679 75248679 C A YLPM1 Missense_Mutation p.Q645K 0.24 benign(0.002) TCGA-CR-7388-01 14 75248700 75248700 C T YLPM1 Missense_Mutation p.P652S 0.22 possibly_damaging(0.803) TCGA-CR-7388-01 14 75473335 75473335 G C EIF2B2 Missense_Mutation p.G250A 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-CR-7388-01 15 102215919 102215919 A T TARSL2 Missense_Mutation p.C558S 0.29 deleterious(0.03) benign(0.082) TCGA-CR-7388-01 15 20490580 20490580 T A CHEK2P2 RNA 0.04 TCGA-CR-7388-01 15 20649480 20649480 C A HERC2P3 Intron 0.15 TCGA-CR-7388-01 15 20876530 20876530 C A NBEAP1 RNA 0.10 TCGA-CR-7388-01 15 24923661 24923661 C A NPAP1 Missense_Mutation p.P883T 0.11 tolerated(0.23) benign(0.35) TCGA-CR-7388-01 15 25490534 25490534 C A SNORD115-40 3'Flank 0.11 TCGA-CR-7388-01 15 25953204 25953204 C G ATP10A Missense_Mutation p.E832Q 0.14 tolerated(0.28) benign(0.059) TCGA-CR-7388-01 15 32929051 32929051 A T ARHGAP11A Missense_Mutation p.T693S 0.13 tolerated(0.23) benign(0.009) TCGA-CR-7388-01 15 45409770 45409770 G C DUOXA1 Missense_Mutation p.F465L 0.40 tolerated_low_confidence(0.64) benign(0.003) TCGA-CR-7388-01 15 49118015 49118015 C T SHC4 3'UTR 0.20 TCGA-CR-7388-01 15 49584728 49584728 C G GALK2 Missense_Mutation p.Q321E 0.16 tolerated(0.57) benign(0.006) TCGA-CR-7388-01 15 59209166 59209166 C G SLTM Missense_Mutation p.D95H 0.12 deleterious(0) unknown(0) TCGA-CR-7388-01 15 65497636 65497636 T A CILP Missense_Mutation p.Q198L 0.15 tolerated(0.18) benign(0.122) TCGA-CR-7388-01 15 75094861 75094861 G T CSK 3'UTR 0.11 TCGA-CR-7388-01 15 75977614 75977614 C T CSPG4 Silent p.L1406L 0.08 TCGA-CR-7388-01 15 81041863 81041863 G T ABHD17C Silent p.V200V 0.09 TCGA-CR-7388-01 15 81225753 81225753 C G KIAA1199 Missense_Mutation p.I987M 0.19 deleterious(0) possibly_damaging(0.568) TCGA-CR-7388-01 15 94901811 94901811 A T MCTP2 Missense_Mutation p.D424V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 16 15179505 15179505 C T RRN3 Missense_Mutation p.E175K 0.15 deleterious(0.02) probably_damaging(0.989) TCGA-CR-7388-01 16 20329553 20329553 T G GP2 Missense_Mutation p.T406P 0.11 deleterious(0) probably_damaging(0.953) TCGA-CR-7388-01 16 2159507 2159507 G A PKD1 Silent p.I1887I 0.17 TCGA-CR-7388-01 16 27561184 27561184 C G GTF3C1 Missense_Mutation p.E10Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 16 29825423 29825423 C G PRRT2 Intron 0.24 TCGA-CR-7388-01 16 31131716 31131716 G T KAT8 Missense_Mutation p.V115L 0.36 tolerated(0.41) benign(0.001) TCGA-CR-7388-01 16 31308844 31308844 T C ITGAM Missense_Mutation p.Y456H 0.18 deleterious(0.01) probably_damaging(1) TCGA-CR-7388-01 16 31487345 31487345 C G TGFB1I1 Missense_Mutation p.L243V 0.20 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 16 3187533 3187533 C G ZNF213 Missense_Mutation p.I84M 0.12 deleterious(0.04) possibly_damaging(0.544) TCGA-CR-7388-01 16 3304450 3304450 G A MEFV Silent p.N206N 0.19 TCGA-CR-7388-01 16 3487315 3487315 T A ZNF597 Silent p.P128P 0.24 TCGA-CR-7388-01 16 3633428 3633428 G A SLX4 Missense_Mutation p.S1608L 0.07 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 16 48145806 48145806 C G ABCC12 Missense_Mutation p.D669H 0.15 deleterious(0) probably_damaging(0.966) TCGA-CR-7388-01 16 61851473 61851473 T C CDH8 Missense_Mutation p.Y396C 0.18 deleterious(0) probably_damaging(0.989) TCGA-CR-7388-01 16 67173918 67173918 G A C16orf70 Silent p.K231K 0.05 TCGA-CR-7388-01 16 67333532 67333532 G A KCTD19 Intron 0.27 TCGA-CR-7388-01 16 67470691 67470691 C T HSD11B2 Missense_Mutation p.R335C 0.11 deleterious(0) possibly_damaging(0.582) TCGA-CR-7388-01 16 68335378 68335378 C T SLC7A6 3'UTR 0.35 TCGA-CR-7388-01 16 69458700 69458700 G C CYB5B Missense_Mutation p.L38F 0.07 tolerated(0.68) benign(0.016) TCGA-CR-7388-01 16 69458737 69458737 G A CYB5B Missense_Mutation p.D51N 0.11 tolerated(0.07) benign(0.32) TCGA-CR-7388-01 16 70573046 70573046 G T SF3B3 Missense_Mutation p.V335F 0.31 deleterious(0) probably_damaging(0.944) TCGA-CR-7388-01 16 71015349 71015349 C G HYDIN Silent p.L1485L 0.14 TCGA-CR-7388-01 16 72158692 72158692 C A PMFBP1 Nonsense_Mutation p.E855* 0.12 TCGA-CR-7388-01 16 75481557 75481557 C A TMEM170A Missense_Mutation p.A112S 0.15 tolerated(0.27) probably_damaging(0.944) TCGA-CR-7388-01 16 8860098 8860098 G A ABAT Missense_Mutation p.E192K 0.23 deleterious(0.03) possibly_damaging(0.521) TCGA-CR-7388-01 16 89865401 89865401 C - FANCA Intron 0.28 TCGA-CR-7388-01 17 10406202 10406202 A G MYH1 Silent p.G988G 0.17 TCGA-CR-7388-01 17 12666815 12666815 G C MYOCD Missense_Mutation p.E939Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 17 2218848 2218848 C G SRR Intron 0.07 TCGA-CR-7388-01 17 27829692 27829692 C G TAOK1 Nonsense_Mutation p.S430* 0.12 TCGA-CR-7388-01 17 30374901 30374901 C G LRRC37B Missense_Mutation p.I788M 0.07 deleterious(0.01) possibly_damaging(0.703) TCGA-CR-7388-01 17 33749704 33749704 G C SLFN12 Missense_Mutation p.S115C 0.12 tolerated(0.07) possibly_damaging(0.818) TCGA-CR-7388-01 17 34871743 34871743 C G MYO19 Missense_Mutation p.E169Q 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 17 3561357 3561357 T C CTNS Missense_Mutation p.F247S 0.32 deleterious(0) probably_damaging(0.927) TCGA-CR-7388-01 17 36093688 36093688 G C HNF1B Missense_Mutation p.S224C 0.19 deleterious(0.02) possibly_damaging(0.469) TCGA-CR-7388-01 17 36484183 36484183 C G GPR179 Missense_Mutation p.E1757Q 0.09 tolerated(0.15) benign(0.232) TCGA-CR-7388-01 17 36484226 36484226 C G GPR179 Missense_Mutation p.E1742D 0.09 tolerated(0.22) possibly_damaging(0.524) TCGA-CR-7388-01 17 36484653 36484653 C G GPR179 Missense_Mutation p.R1600T 0.05 tolerated(0.39) benign(0.017) TCGA-CR-7388-01 17 40315263 40315263 G A KCNH4 Missense_Mutation p.S856F 0.19 tolerated(0.08) benign(0.068) TCGA-CR-7388-01 17 40865279 40865279 T C EZH1 Silent p.K384K 0.31 TCGA-CR-7388-01 17 4389751 4389751 G T SPNS3 Missense_Mutation p.Q441H 0.15 tolerated(0.11) benign(0.275) TCGA-CR-7388-01 17 45056164 45056164 G T RPRML Silent p.I70I 0.48 TCGA-CR-7388-01 17 47699430 47699430 C G SPOP Splice_Site p.X27_splice 0.41 TCGA-CR-7388-01 17 57288086 57288086 G C SMG8 Missense_Mutation p.R225P 0.44 deleterious(0.01) possibly_damaging(0.852) TCGA-CR-7388-01 17 57955478 57955478 C T TUBD1 Missense_Mutation p.R252K 0.18 tolerated(0.56) benign(0.018) TCGA-CR-7388-01 17 7131012 7131012 G A DVL2 Missense_Mutation p.S398F 0.22 deleterious(0.03) probably_damaging(0.969) TCGA-CR-7388-01 17 73498346 73498346 C G CASKIN2 Missense_Mutation p.E937Q 0.23 tolerated(0.18) benign(0.255) TCGA-CR-7388-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.42 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 17 80439061 80439061 G A NARF Missense_Mutation p.R248Q 0.17 tolerated(0.21) benign(0.023) TCGA-CR-7388-01 17 9536276 9536276 C G WDR16 Missense_Mutation p.H416D 0.14 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 18 118470 118470 C T ROCK1P1 RNA 0.14 TCGA-CR-7388-01 18 13884801 13884801 G T MC2R Silent p.V239V 0.12 TCGA-CR-7388-01 18 30091842 30091842 C T WBP11P1 RNA 0.08 TCGA-CR-7388-01 18 31323161 31323161 C T ASXL3 Nonsense_Mutation p.R1117* 0.16 TCGA-CR-7388-01 18 31326042 31326042 G T ASXL3 Missense_Mutation p.S2077I 0.15 probably_damaging(0.997) TCGA-CR-7388-01 18 34261476 34261476 G T FHOD3 Missense_Mutation p.R463L 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CR-7388-01 18 3880031 3880031 C A DLGAP1 Missense_Mutation p.G13V 0.28 tolerated(0.33) benign(0.01) TCGA-CR-7388-01 18 3880032 3880032 C G DLGAP1 Missense_Mutation p.G13R 0.32 tolerated(0.12) possibly_damaging(0.483) TCGA-CR-7388-01 18 5397176 5397176 C A EPB41L3 Nonsense_Mutation p.E908* 0.15 TCGA-CR-7388-01 18 56034991 56034991 C G NEDD4L Missense_Mutation p.L693V 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 18 56202141 56202141 T A ALPK2 Nonsense_Mutation p.K1760* 0.12 TCGA-CR-7388-01 18 64172405 64172405 C G CDH19 Missense_Mutation p.D655H 0.22 deleterious(0) probably_damaging(0.988) TCGA-CR-7388-01 18 7955122 7955122 C A PTPRM Missense_Mutation p.P281Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 18 9258619 9258619 G - ANKRD12 Frame_Shift_Del p.R1787Gfs*12 0.12 TCGA-CR-7388-01 19 10893674 10893674 G C DNM2 Missense_Mutation p.E243Q 0.09 tolerated(0.19) benign(0.431) TCGA-CR-7388-01 19 12430511 12430511 C G ZNF563 Missense_Mutation p.E110Q 0.08 tolerated(0.05) probably_damaging(0.917) TCGA-CR-7388-01 19 12542690 12542690 C A ZNF443 Missense_Mutation p.G99V 0.14 tolerated(0.06) benign(0.024) TCGA-CR-7388-01 19 12924254 12924254 G T RNASEH2A Missense_Mutation p.G292C 0.12 tolerated(0.2) benign(0.003) TCGA-CR-7388-01 19 14710934 14710934 C T CLEC17A Silent p.A278A 0.14 TCGA-CR-7388-01 19 15587077 15587077 C T PGLYRP2 Missense_Mutation p.R135H 0.16 tolerated(0.57) benign(0.002) TCGA-CR-7388-01 19 19356187 19356187 G A NCAN Silent p.V1186V 0.19 TCGA-CR-7388-01 19 2191238 2191238 C T DOT1L Silent p.S164S 0.20 TCGA-CR-7388-01 19 21991840 21991840 C T ZNF43 Silent p.K333K 0.16 TCGA-CR-7388-01 19 22155676 22155676 G C ZNF208 Silent p.P720P 0.16 TCGA-CR-7388-01 19 22942301 22942301 C G ZNF99 Missense_Mutation p.W137S 0.10 tolerated(0.34) benign(0.076) TCGA-CR-7388-01 19 2435054 2435054 T C LMNB2 Missense_Mutation p.H267R 0.19 deleterious(0) benign(0.419) TCGA-CR-7388-01 19 30936467 30936467 G T ZNF536 Silent p.V666V 0.22 TCGA-CR-7388-01 19 36018830 36018830 C T SBSN Silent p.G118G 0.06 TCGA-CR-7388-01 19 36231339 36231339 C T IGFLR1 Missense_Mutation p.G95E 0.21 tolerated(0.11) probably_damaging(0.999) TCGA-CR-7388-01 19 37643946 37643946 C A ZNF585A Missense_Mutation p.L230F 0.20 tolerated(0.09) probably_damaging(1) TCGA-CR-7388-01 19 38682885 38682885 G A SIPA1L3 Missense_Mutation p.E1511K 0.28 tolerated(0.34) probably_damaging(0.986) TCGA-CR-7388-01 19 38903644 38903644 G C RASGRP4 Missense_Mutation p.Q488E 0.18 tolerated(0.08) benign(0.003) TCGA-CR-7388-01 19 39879272 39879272 A T PAF1 Missense_Mutation p.L262Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-CR-7388-01 19 40366446 40366446 G A FCGBP Silent p.F4596F 0.11 TCGA-CR-7388-01 19 41281750 41281750 C T MIA Missense_Mutation p.S74F 0.18 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 19 41631533 41631533 T G CYP2F1 Missense_Mutation p.S430A 0.15 deleterious(0.01) benign(0.072) TCGA-CR-7388-01 19 42558056 42558056 C T GRIK5 Missense_Mutation p.R361Q 0.31 deleterious(0.05) possibly_damaging(0.555) TCGA-CR-7388-01 19 44661807 44661807 G A ZNF234 Silent p.G546G 0.14 TCGA-CR-7388-01 19 44733947 44733947 G A ZNF227 Missense_Mutation p.M83I 0.11 deleterious(0.03) benign(0.01) TCGA-CR-7388-01 19 44778176 44778176 G A ZNF233 Missense_Mutation p.E455K 0.16 deleterious(0.03) benign(0.025) TCGA-CR-7388-01 19 44892232 44892232 G T ZNF285 Missense_Mutation p.Q59K 0.12 tolerated(0.06) benign(0.223) TCGA-CR-7388-01 19 4538167 4538167 C G LRG1 Missense_Mutation p.E277Q 0.09 tolerated(0.56) benign(0.007) TCGA-CR-7388-01 19 45575215 45575215 C T ZNF296 Missense_Mutation p.E358K 0.07 tolerated(0.21) benign(0.003) TCGA-CR-7388-01 19 47030233 47030233 C A PPP5D1 Missense_Mutation p.G62C 0.30 tolerated(0.19) benign(0.039) TCGA-CR-7388-01 19 47151869 47151869 C T DACT3 Missense_Mutation p.G587E 0.20 tolerated(0.08) benign(0.013) TCGA-CR-7388-01 19 47969076 47969076 C T SLC8A2 Silent p.L195L 0.14 TCGA-CR-7388-01 19 48305449 48305449 G C TPRX1 Silent p.A273A 0.17 TCGA-CR-7388-01 19 49110596 49110596 C G SPACA4 Missense_Mutation p.P121A 0.56 tolerated_low_confidence(0.55) unknown(0) TCGA-CR-7388-01 19 49514288 49514288 G C RUVBL2 Missense_Mutation p.E274Q 0.12 tolerated(0.29) benign(0.118) TCGA-CR-7388-01 19 49912474 49912474 G A CCDC155 Silent p.L360L 0.20 TCGA-CR-7388-01 19 50167864 50167864 C A IRF3 Intron 0.25 TCGA-CR-7388-01 19 50549315 50549315 A C ZNF473 Silent p.R539R 0.21 TCGA-CR-7388-01 19 51994940 51994940 C A SIGLEC12 Missense_Mutation p.Q581H 0.19 deleterious(0.01) benign(0.031) TCGA-CR-7388-01 19 52376905 52376905 C A ZNF577 Missense_Mutation p.G113V 0.17 tolerated(0.19) benign(0.272) TCGA-CR-7388-01 19 53058026 53058026 A G ZNF808 Silent p.G619G 0.22 TCGA-CR-7388-01 19 53643887 53643887 T G ZNF347 Missense_Mutation p.T733P 0.22 deleterious(0) probably_damaging(0.943) TCGA-CR-7388-01 19 53945743 53945743 A C TPM3P9 RNA 0.16 TCGA-CR-7388-01 19 54313208 54313208 C T NLRP12 Missense_Mutation p.E569K 0.25 tolerated(0.29) benign(0.007) TCGA-CR-7388-01 19 54726424 54726424 G - LILRB3 Frame_Shift_Del p.K28Nfs*11 0.16 TCGA-CR-7388-01 19 54782234 54782234 C G LILRB2 Missense_Mutation p.E380Q 0.11 tolerated(0.06) possibly_damaging(0.893) TCGA-CR-7388-01 19 55915773 55915773 G A UBE2S Silent p.P75P 0.17 TCGA-CR-7388-01 19 56244612 56244612 C G NLRP9 Missense_Mutation p.E195D 0.19 deleterious(0.05) benign(0.198) TCGA-CR-7388-01 19 56300718 56300718 A G NLRP11 Missense_Mutation p.I854T 0.18 tolerated(0.62) benign(0.002) TCGA-CR-7388-01 19 57176264 57176264 C G ZNF835 Missense_Mutation p.E101D 0.25 deleterious(0.01) benign(0.162) TCGA-CR-7388-01 19 57723646 57723646 C T ZNF264 Missense_Mutation p.T394I 0.14 deleterious(0) probably_damaging(0.996) TCGA-CR-7388-01 19 57922695 57922695 C T ZNF17 5'UTR 0.67 TCGA-CR-7388-01 19 6465616 6465616 C G CRB3 Missense_Mutation p.S48C 0.19 deleterious(0) probably_damaging(0.938) TCGA-CR-7388-01 19 6694461 6694461 G T C3 Silent p.A1045A 0.16 TCGA-CR-7388-01 19 7594574 7594574 C G MCOLN1 Missense_Mutation p.I445M 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 19 7705802 7705802 G C STXBP2 Silent p.L114L 0.08 TCGA-CR-7388-01 19 7810693 7810693 C T CD209 Silent p.L153L 0.08 TCGA-CR-7388-01 19 8531162 8531162 G A HNRNPM Missense_Mutation p.S225N 0.14 tolerated(0.1) benign(0.219) TCGA-CR-7388-01 19 9003692 9003692 T A MUC16 Splice_Site p.X13317_splice 0.19 TCGA-CR-7388-01 19 9048498 9048498 G A MUC16 Silent p.L11045L 0.18 TCGA-CR-7388-01 19 9068263 9068263 T A MUC16 Missense_Mutation p.T6395S 0.14 unknown(0) TCGA-CR-7388-01 19 9297146 9297146 C G OR7D2 Nonsense_Mutation p.S230* 0.10 TCGA-CR-7388-01 1 100681578 100681578 G C DBT Missense_Mutation p.P245A 0.14 tolerated(0.55) benign(0.001) TCGA-CR-7388-01 1 101361893 101361893 G T SLC30A7 Missense_Mutation p.W25C 0.13 deleterious(0.03) benign(0.087) TCGA-CR-7388-01 1 10659315 10659315 G A PEX14 Missense_Mutation p.D64N 0.10 deleterious(0.04) benign(0.032) TCGA-CR-7388-01 1 11206848 11206848 C A MTOR Missense_Mutation p.G1524V 0.29 deleterious(0.03) possibly_damaging(0.64) TCGA-CR-7388-01 1 11334044 11334044 G C UBIAD1 Silent p.L152L 0.13 TCGA-CR-7388-01 1 115256551 115256551 C A NRAS Missense_Mutation p.D54Y 0.24 deleterious(0) probably_damaging(0.919) TCGA-CR-7388-01 1 117624455 117624455 G A TTF2 Missense_Mutation p.D597N 0.15 deleterious(0) probably_damaging(0.99) TCGA-CR-7388-01 1 12726424 12726424 C T AADACL4 Missense_Mutation p.P301L 0.23 deleterious(0.05) possibly_damaging(0.521) TCGA-CR-7388-01 1 144824745 144824745 A T NBPF9 Silent p.P430P 0.23 TCGA-CR-7388-01 1 150239858 150239858 T A APH1A Missense_Mutation p.I127F 0.40 tolerated(0.09) possibly_damaging(0.814) TCGA-CR-7388-01 1 152059098 152059098 C G TCHHL1 Missense_Mutation p.E354Q 0.11 tolerated(0.1) possibly_damaging(0.521) TCGA-CR-7388-01 1 152284282 152284282 G C FLG Nonsense_Mutation p.S1027* 0.30 TCGA-CR-7388-01 1 152681605 152681605 C A LCE4A Silent p.I18I 0.13 TCGA-CR-7388-01 1 153004978 153004978 G A SPRR1B Missense_Mutation p.V53M 0.10 tolerated(0.05) possibly_damaging(0.844) TCGA-CR-7388-01 1 153926054 153926054 C G CRTC2 Missense_Mutation p.E155Q 0.09 deleterious(0.01) possibly_damaging(0.844) TCGA-CR-7388-01 1 155209413 155209413 C T GBA Missense_Mutation p.E150K 0.15 tolerated(0.39) benign(0.003) TCGA-CR-7388-01 1 155924708 155924708 G A ARHGEF2 Silent p.L590L 0.31 TCGA-CR-7388-01 1 157545497 157545497 C A FCRL4 Nonsense_Mutation p.E485* 0.29 TCGA-CR-7388-01 1 157556230 157556230 C G FCRL4 Missense_Mutation p.G288A 0.29 tolerated(0.08) benign(0.116) TCGA-CR-7388-01 1 157667247 157667247 G A FCRL3 Intron 0.20 TCGA-CR-7388-01 1 158746552 158746552 G T OR6N2 Missense_Mutation p.L292I 0.24 deleterious(0) possibly_damaging(0.844) TCGA-CR-7388-01 1 158746962 158746962 C A OR6N2 Missense_Mutation p.C155F 0.21 tolerated(0.27) possibly_damaging(0.689) TCGA-CR-7388-01 1 158812150 158812150 C A MNDA Silent p.A69A 0.28 TCGA-CR-7388-01 1 159410397 159410397 G C OR10J1 Silent p.L283L 0.20 TCGA-CR-7388-01 1 159684351 159684351 G - CRP 5'UTR 0.30 TCGA-CR-7388-01 1 160098579 160098579 C A ATP1A2 Silent p.T385T 0.27 TCGA-CR-7388-01 1 163317670 163317670 C A NUF2 Missense_Mutation p.Q356K 0.17 tolerated(0.06) benign(0.033) TCGA-CR-7388-01 1 167095719 167095719 C T DUSP27 Silent p.L451L 0.33 TCGA-CR-7388-01 1 169094256 169094256 A G ATP1B1 Missense_Mutation p.M121V 0.05 tolerated(0.43) benign(0.004) TCGA-CR-7388-01 1 170961323 170961323 G A MROH9 Nonsense_Mutation p.W349* 0.11 TCGA-CR-7388-01 1 171293343 171293343 G A FMO4 Missense_Mutation p.E130K 0.07 deleterious(0.03) probably_damaging(0.917) TCGA-CR-7388-01 1 173934113 173934113 G C RC3H1 Missense_Mutation p.P494A 0.28 tolerated(0.3) benign(0.017) TCGA-CR-7388-01 1 176640191 176640191 C G PAPPA2 Missense_Mutation p.R693G 0.29 tolerated(0.09) benign(0.162) TCGA-CR-7388-01 1 179084079 179084079 C T ABL2 Missense_Mutation p.E499K 0.08 deleterious(0.01) possibly_damaging(0.819) TCGA-CR-7388-01 1 179398721 179398721 C T AXDND1 Silent p.Y433Y 0.12 TCGA-CR-7388-01 1 183230439 183230439 C G NMNAT2 Splice_Site p.X218_splice 0.37 TCGA-CR-7388-01 1 185833652 185833652 G A HMCN1 Silent p.L130L 0.12 TCGA-CR-7388-01 1 185966560 185966560 G C HMCN1 Splice_Site p.X1260_splice 0.11 TCGA-CR-7388-01 1 185972962 185972962 G T HMCN1 Missense_Mutation p.W1487C 0.09 probably_damaging(0.999) TCGA-CR-7388-01 1 186064470 186064470 G T HMCN1 Missense_Mutation p.A3464S 0.17 benign(0.048) TCGA-CR-7388-01 1 190067524 190067524 T A BRINP3 Missense_Mutation p.E642V 0.16 deleterious(0.01) benign(0.353) TCGA-CR-7388-01 1 19062184 19062184 C A PAX7 Missense_Mutation p.S405Y 0.23 deleterious_low_confidence(0) possibly_damaging(0.845) TCGA-CR-7388-01 1 192548282 192548282 C G RGS1 Missense_Mutation p.R154G 0.15 tolerated(0.05) benign(0.005) TCGA-CR-7388-01 1 197128811 197128811 G C ZBTB41 Missense_Mutation p.S803C 0.10 deleterious(0.04) possibly_damaging(0.491) TCGA-CR-7388-01 1 198682089 198682089 A G PTPRC Silent p.G393G 0.31 TCGA-CR-7388-01 1 207265029 207265029 C G C4BPB Missense_Mutation p.F91L 0.05 tolerated(0.3) benign(0.032) TCGA-CR-7388-01 1 207651401 207651401 C A CR2 Missense_Mutation p.A1025E 0.30 tolerated(0.07) probably_damaging(0.994) TCGA-CR-7388-01 1 207753627 207753627 C T CR1 Missense_Mutation p.P1660L 0.06 tolerated(0.21) benign(0.067) TCGA-CR-7388-01 1 212151750 212151750 G A INTS7 Missense_Mutation p.A445V 0.13 tolerated(0.28) benign(0.032) TCGA-CR-7388-01 1 213146178 213146178 G T VASH2 Missense_Mutation p.V208F 0.36 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 1 214171246 214171246 C A PROX1 Silent p.A456A 0.24 TCGA-CR-7388-01 1 216850521 216850521 C T ESRRG Missense_Mutation p.M128I 0.20 tolerated(1) benign(0.002) TCGA-CR-7388-01 1 21889671 21889671 G T ALPL Missense_Mutation p.K122N 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 1 220355610 220355610 G C RAB3GAP2 Missense_Mutation p.Q767E 0.13 tolerated(0.11) benign(0.19) TCGA-CR-7388-01 1 223176180 223176180 G T DISP1 Missense_Mutation p.V481L 0.24 tolerated(0.41) benign(0.01) TCGA-CR-7388-01 1 226076549 226076549 G C LEFTY1 Missense_Mutation p.S73C 0.26 deleterious(0) probably_damaging(0.989) TCGA-CR-7388-01 1 228346341 228346341 G C GJC2 Silent p.A294A 0.27 TCGA-CR-7388-01 1 237777906 237777906 T C RYR2 Silent p.Y1826Y 0.21 TCGA-CR-7388-01 1 240255773 240255773 A G FMN2 Missense_Mutation p.S122G 0.27 unknown(0) TCGA-CR-7388-01 1 240492684 240492684 C G FMN2 Silent p.V1451V 0.08 TCGA-CR-7388-01 1 24137224 24137224 A C HMGCL Splice_Site p.X187_splice 0.21 TCGA-CR-7388-01 1 241798317 241798317 G C CHML Nonsense_Mutation p.S251* 0.10 TCGA-CR-7388-01 1 247588696 247588696 C A NLRP3 Missense_Mutation p.P651T 0.17 tolerated(0.48) possibly_damaging(0.808) TCGA-CR-7388-01 1 247902360 247902360 C T OR14K1 Silent p.L148L 0.07 TCGA-CR-7388-01 1 248437009 248437009 G T OR2T33 Silent p.S36S 0.20 TCGA-CR-7388-01 1 248637210 248637210 C T OR2T3 Missense_Mutation p.P187S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7388-01 1 248685139 248685139 C A OR2G6 Missense_Mutation p.S64R 0.35 tolerated(0.09) benign(0.043) TCGA-CR-7388-01 1 26691026 26691026 G C ZNF683 Silent p.L337L 0.20 TCGA-CR-7388-01 1 27092740 27092740 G - ARID1A Frame_Shift_Del p.G922Afs*2 0.13 TCGA-CR-7388-01 1 29652139 29652139 C T PTPRU Missense_Mutation p.A1436V 0.16 deleterious(0.02) benign(0.084) TCGA-CR-7388-01 1 31414879 31414879 T A PUM1 Missense_Mutation p.E1029V 0.19 deleterious(0) benign(0.021) TCGA-CR-7388-01 1 36755352 36755352 G A THRAP3 Missense_Mutation p.E578K 0.09 tolerated(0.14) probably_damaging(0.969) TCGA-CR-7388-01 1 55224789 55224789 T A PARS2 Missense_Mutation p.T16S 0.16 tolerated_low_confidence(0.63) benign(0.002) TCGA-CR-7388-01 1 57378249 57378249 G T C8A Missense_Mutation p.Q518H 0.24 tolerated(0.07) benign(0.035) TCGA-CR-7388-01 1 67507918 67507918 C - SLC35D1 Splice_Site p.X243_splice 0.15 TCGA-CR-7388-01 1 67558779 67558779 G C C1orf141 Nonsense_Mutation p.S371* 0.11 TCGA-CR-7388-01 1 74507579 74507579 C A LRRIQ3 Missense_Mutation p.D346Y 0.25 deleterious(0.01) probably_damaging(0.945) TCGA-CR-7388-01 1 75036823 75036823 G A C1orf173 Missense_Mutation p.S1524F 0.14 tolerated(0.06) probably_damaging(0.948) TCGA-CR-7388-01 1 75037379 75037379 C G C1orf173 Missense_Mutation p.A1339P 0.25 tolerated(0.07) probably_damaging(0.956) TCGA-CR-7388-01 1 78200086 78200086 T C USP33 Missense_Mutation p.K188R 0.15 tolerated(0.11) benign(0.053) TCGA-CR-7388-01 1 7999954 7999954 C T TNFRSF9 Splice_Site p.X34_splice 0.30 TCGA-CR-7388-01 1 84670194 84670194 G C PRKACB Intron 0.08 TCGA-CR-7388-01 1 84991680 84991680 C A SPATA1 RNA 0.16 TCGA-CR-7388-01 1 85733496 85733496 C T BCL10 Silent p.L172L 0.19 TCGA-CR-7388-01 1 871231 871231 T A SAMD11 Missense_Mutation p.C129S 0.25 tolerated(0.21) benign(0.119) TCGA-CR-7388-01 1 901962 901964 CTT - PLEKHN1 In_Frame_Del p.F18del 0.31 TCGA-CR-7388-01 1 91782033 91782033 C A HFM1 Missense_Mutation p.G938V 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 1 94354598 94354598 C T GCLM Missense_Mutation p.G258E 0.07 deleterious(0) probably_damaging(0.98) TCGA-CR-7388-01 1 94650455 94650455 C T ARHGAP29 Silent p.E694E 0.12 TCGA-CR-7388-01 20 1616920 1616920 C T SIRPG Missense_Mutation p.R221H 0.21 tolerated(1) benign(0.006) TCGA-CR-7388-01 20 2842527 2842527 T G VPS16 Missense_Mutation p.F326V 0.34 deleterious(0.03) possibly_damaging(0.622) TCGA-CR-7388-01 20 31023983 31023983 A - ASXL1 Frame_Shift_Del p.N1158Tfs*13 0.17 TCGA-CR-7388-01 20 33068494 33068494 G C ITCH Missense_Mutation p.E678Q 0.30 deleterious(0.03) probably_damaging(0.933) TCGA-CR-7388-01 20 33440233 33440233 C A GGT7 Silent p.V476V 0.23 TCGA-CR-7388-01 20 34022553 34022553 C G GDF5 Missense_Mutation p.Q220H 0.09 deleterious(0) benign(0.068) TCGA-CR-7388-01 20 35441119 35441119 G A SOGA1 Silent p.S815S 0.12 TCGA-CR-7388-01 20 36948668 36948668 C A BPI Missense_Mutation p.Q254K 0.19 tolerated(0.81) benign(0.024) TCGA-CR-7388-01 20 37356754 37356754 C A SLC32A1 Silent p.L350L 0.13 TCGA-CR-7388-01 20 39832463 39832463 G C ZHX3 Missense_Mutation p.P365R 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 20 42635314 42635314 G T TOX2 Missense_Mutation p.G98V 0.15 tolerated(0.07) possibly_damaging(0.861) TCGA-CR-7388-01 20 42743470 42743470 C T JPH2 Missense_Mutation p.G686D 0.16 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 20 45865143 45865143 G A ZMYND8 Missense_Mutation p.S882L 0.10 tolerated(0.07) benign(0.054) TCGA-CR-7388-01 20 58519303 58519303 G A FAM217B Missense_Mutation p.R102K 0.14 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 20 60733801 60733801 C T SS18L1 Missense_Mutation p.T48M 0.09 deleterious(0.04) probably_damaging(0.982) TCGA-CR-7388-01 20 61488904 61488904 C T TCFL5 Missense_Mutation p.E361K 0.09 deleterious(0.01) possibly_damaging(0.872) TCGA-CR-7388-01 20 61511825 61511825 G A DIDO1 Missense_Mutation p.P1828L 0.20 possibly_damaging(0.848) TCGA-CR-7388-01 20 9416221 9416221 T G PLCB4 Missense_Mutation p.L835V 0.15 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 21 31802642 31802642 G T KRTAP13-4 Missense_Mutation p.G17C 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-CR-7388-01 21 41719757 41719757 A G DSCAM Silent p.N350N 0.24 TCGA-CR-7388-01 21 43161808 43161808 C T RIPK4 Silent p.G515G 0.16 TCGA-CR-7388-01 21 43413920 43413920 C G ZBTB21 Missense_Mutation p.E95D 0.15 tolerated(0.39) benign(0.267) TCGA-CR-7388-01 21 43414197 43414197 C G ZBTB21 Missense_Mutation p.G3A 0.10 tolerated(0.09) probably_damaging(0.927) TCGA-CR-7388-01 21 46945761 46945761 C A SLC19A1 Silent p.V421V 0.24 TCGA-CR-7388-01 22 16449522 16449522 T A OR11H1 Nonsense_Mutation p.K95* 0.12 TCGA-CR-7388-01 22 17072993 17072993 G T CCT8L2 Missense_Mutation p.L150M 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 22 24039430 24039430 G C RGL4 Missense_Mutation p.D412H 0.07 deleterious(0.01) possibly_damaging(0.566) TCGA-CR-7388-01 22 35689665 35689665 G A HMGXB4 3'UTR 0.33 TCGA-CR-7388-01 22 36629289 36629289 T C APOL2 Splice_Site 0.44 TCGA-CR-7388-01 22 43830958 43830958 G C MPPED1 Missense_Mutation p.D77H 0.09 deleterious(0.03) possibly_damaging(0.672) TCGA-CR-7388-01 22 44340664 44340664 C T PNPLA3 Silent p.L402L 0.06 TCGA-CR-7388-01 2 105897018 105897018 G A TGFBRAP1 Silent p.L428L 0.16 TCGA-CR-7388-01 2 109988086 109988086 G T SH3RF3 Silent p.A298A 0.20 TCGA-CR-7388-01 2 114035972 114035972 C T PAX8 5'UTR 0.16 TCGA-CR-7388-01 2 121743959 121743959 C - GLI2 Frame_Shift_Del p.S690Afs*5 0.20 TCGA-CR-7388-01 2 128335742 128335742 C T MYO7B Missense_Mutation p.A295V 0.34 tolerated(0.19) benign(0.097) TCGA-CR-7388-01 2 131520753 131520753 G C AMER3 Missense_Mutation p.G370R 0.15 deleterious(0) probably_damaging(0.991) TCGA-CR-7388-01 2 136362449 136362449 G A R3HDM1 Missense_Mutation p.E12K 0.14 tolerated(0.26) benign(0.046) TCGA-CR-7388-01 2 145147399 145147399 C T ZEB2 Silent p.R1088R 0.11 TCGA-CR-7388-01 2 152138558 152138558 C T NMI Splice_Site p.X28_splice 0.24 TCGA-CR-7388-01 2 160294955 160294955 C G BAZ2B Silent p.V384V 0.24 TCGA-CR-7388-01 2 160994114 160994114 C G ITGB6 Silent p.L497L 0.07 TCGA-CR-7388-01 2 162711549 162711549 T C SLC4A10 Silent p.L162L 0.12 TCGA-CR-7388-01 2 162849789 162849789 G A DPP4 3'UTR 0.17 TCGA-CR-7388-01 2 162891810 162891810 G C DPP4 Missense_Mutation p.A213G 0.17 tolerated(0.12) probably_damaging(0.99) TCGA-CR-7388-01 2 167159754 167159754 C A SCN9A Missense_Mutation p.M249I 0.16 tolerated(0.06) benign(0.09) TCGA-CR-7388-01 2 169791840 169791840 G T ABCB11 Silent p.P970P 0.19 TCGA-CR-7388-01 2 169989114 169989114 G A LRP2 Silent p.N4566N 0.26 TCGA-CR-7388-01 2 175436931 175436931 C A WIPF1 Missense_Mutation p.R201L 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-CR-7388-01 2 17954379 17954379 G C GEN1 Missense_Mutation p.E324Q 0.10 deleterious(0) benign(0.056) TCGA-CR-7388-01 2 179614079 179614079 T C TTN Intron 0.13 TCGA-CR-7388-01 2 190926956 190926956 T C MSTN Missense_Mutation p.T123A 0.28 tolerated(0.13) benign(0.021) TCGA-CR-7388-01 2 192273886 192273886 G C MYO1B Missense_Mutation p.R916S 0.18 tolerated(0.25) benign(0.271) TCGA-CR-7388-01 2 200137230 200137230 C A SATB2 Missense_Mutation p.V636L 0.16 deleterious(0) possibly_damaging(0.866) TCGA-CR-7388-01 2 202400908 202400908 T G ALS2CR11 Missense_Mutation p.I448L 0.15 tolerated(0.14) benign(0.055) TCGA-CR-7388-01 2 203748374 203748374 G A WDR12 Missense_Mutation p.S360L 0.11 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 2 208866392 208866392 C G PLEKHM3 5'UTR 0.19 TCGA-CR-7388-01 2 209308194 209308194 G T PTH2R Nonsense_Mutation p.E211* 0.20 TCGA-CR-7388-01 2 21231102 21231102 G A APOB Nonsense_Mutation p.Q2880* 0.09 TCGA-CR-7388-01 2 215301378 215301378 G C VWC2L Missense_Mutation p.C139S 0.25 deleterious(0) probably_damaging(0.962) TCGA-CR-7388-01 2 215854053 215854053 C T ABCA12 Missense_Mutation p.G1277R 0.16 deleterious(0) probably_damaging(0.996) TCGA-CR-7388-01 2 216904001 216904001 G C PECR Silent p.L303L 0.16 TCGA-CR-7388-01 2 219873820 219873820 G A CCDC108 Silent p.D1541D 0.22 TCGA-CR-7388-01 2 232373749 232373749 C G LINC00471 RNA 0.11 TCGA-CR-7388-01 2 233635666 233635666 G A KCNJ13 Missense_Mutation p.A136V 0.19 tolerated(0.97) possibly_damaging(0.665) TCGA-CR-7388-01 2 241727548 241727548 C T KIF1A Missense_Mutation p.A95T 0.28 deleterious(0) probably_damaging(0.989) TCGA-CR-7388-01 2 242054809 242054809 T C PASK Missense_Mutation p.K1031R 0.25 tolerated(0.8) benign(0.394) TCGA-CR-7388-01 2 25467409 25467409 C A DNMT3A Missense_Mutation p.R556M 0.16 deleterious(0) probably_damaging(0.996) TCGA-CR-7388-01 2 271881 271881 C T ACP1 Missense_Mutation p.S20L 0.08 deleterious(0.01) benign(0.201) TCGA-CR-7388-01 2 27670397 27670397 C G IFT172 Missense_Mutation p.Q1548H 0.09 tolerated(0.45) benign(0.014) TCGA-CR-7388-01 2 29296154 29296154 A G C2orf71 Missense_Mutation p.L325P 0.18 deleterious(0) probably_damaging(0.997) TCGA-CR-7388-01 2 32735635 32735635 C A BIRC6 Missense_Mutation p.S3427Y 0.08 probably_damaging(0.994) TCGA-CR-7388-01 2 32773002 32773002 C T BIRC6 Missense_Mutation p.S4299F 0.20 probably_damaging(0.994) TCGA-CR-7388-01 2 32853371 32853371 G - TTC27 Frame_Shift_Del p.E5Sfs*5 0.17 TCGA-CR-7388-01 2 33482491 33482491 C T LTBP1 Missense_Mutation p.H770Y 0.19 tolerated(1) benign(0.017) TCGA-CR-7388-01 2 33752432 33752432 G A RASGRP3 Missense_Mutation p.A346T 0.23 tolerated(0.57) benign(0.416) TCGA-CR-7388-01 2 54148034 54148034 G C PSME4 Missense_Mutation p.P752A 0.09 tolerated(0.09) benign(0.091) TCGA-CR-7388-01 2 68609701 68609701 T A PLEK Silent p.T136T 0.28 TCGA-CR-7388-01 2 73799886 73799886 C G ALMS1 Missense_Mutation p.R3627G 0.20 probably_damaging(1) TCGA-CR-7388-01 2 77746095 77746095 C A LRRTM4 Missense_Mutation p.W300C 0.18 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 2 79253157 79253157 T G REG3G 5'UTR 0.15 TCGA-CR-7388-01 2 85836166 85836166 C G C2orf68 Missense_Mutation p.E135Q 0.10 tolerated(0.13) benign(0.051) TCGA-CR-7388-01 2 87042617 87042617 G T CD8B 3'Flank 0.23 TCGA-CR-7388-01 2 88402603 88402603 G C SMYD1 Missense_Mutation p.M305I 0.08 tolerated(0.19) benign(0) TCGA-CR-7388-01 2 8871289 8871289 C G KIDINS220 Missense_Mutation p.R1626P 0.15 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-CR-7388-01 2 90260092 90260092 C A IGKV1D-8 Silent p.A65A 0.16 TCGA-CR-7388-01 2 99180077 99180077 C T INPP4A Missense_Mutation p.R674C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 3 10362771 10362771 G C SEC13 5'UTR 0.09 TCGA-CR-7388-01 3 108135752 108135752 C G MYH15 Missense_Mutation p.E1305D 0.11 deleterious(0.05) benign(0.094) TCGA-CR-7388-01 3 112648042 112648042 A C CD200R1 Missense_Mutation p.V172G 0.07 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 3 113085109 113085109 C A WDR52 Missense_Mutation p.R831L 0.24 deleterious(0) probably_damaging(0.977) TCGA-CR-7388-01 3 119156656 119156656 G A TMEM39A Silent p.F290F 0.15 TCGA-CR-7388-01 3 119306495 119306495 G T ADPRH Missense_Mutation p.V282F 0.24 tolerated(0.05) benign(0.015) TCGA-CR-7388-01 3 120998664 120998664 G T STXBP5L Silent p.G657G 0.11 TCGA-CR-7388-01 3 122437543 122437543 C G PARP14 Missense_Mutation p.I1515M 0.08 deleterious(0.04) benign(0.21) TCGA-CR-7388-01 3 122811251 122811251 G T PDIA5 Silent p.A73A 0.17 TCGA-CR-7388-01 3 122842957 122842957 C T PDIA5 Silent p.I218I 0.20 TCGA-CR-7388-01 3 125879705 125879705 C A ALDH1L1 Missense_Mutation p.D50Y 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-7388-01 3 130649306 130649306 T A ATP2C1 Missense_Mutation p.I52N 0.19 deleterious(0.05) benign(0.397) TCGA-CR-7388-01 3 132320167 132320167 C G ACKR4 Missense_Mutation p.S309C 0.05 deleterious(0) probably_damaging(0.976) TCGA-CR-7388-01 3 137803006 137803006 G C DZIP1L Silent p.L384L 0.05 TCGA-CR-7388-01 3 139062846 139062846 G T MRPS22 5'UTR 0.22 TCGA-CR-7388-01 3 139090585 139090585 T C COPB2 Silent p.A395A 0.06 TCGA-CR-7388-01 3 140397246 140397246 G C TRIM42 Missense_Mutation p.E59Q 0.06 deleterious(0.01) possibly_damaging(0.838) TCGA-CR-7388-01 3 142224127 142224127 G C ATR Missense_Mutation p.H1684D 0.07 tolerated(0.97) benign(0.007) TCGA-CR-7388-01 3 146177778 146177778 G C PLSCR2 Missense_Mutation p.R45G 0.18 tolerated(0.46) benign(0.03) TCGA-CR-7388-01 3 147113922 147113922 G C ZIC4 Silent p.A185A 0.16 TCGA-CR-7388-01 3 150421607 150421607 C T FAM194A Missense_Mutation p.E27K 0.19 tolerated_low_confidence(0.18) possibly_damaging(0.486) TCGA-CR-7388-01 3 150460112 150460112 C G SIAH2 Missense_Mutation p.R264T 0.05 deleterious(0.01) probably_damaging(0.965) TCGA-CR-7388-01 3 150644587 150644587 G T CLRN1 3'Flank 0.15 TCGA-CR-7388-01 3 151073819 151073819 G A MED12L Missense_Mutation p.A850T 0.25 deleterious(0.02) benign(0.042) TCGA-CR-7388-01 3 156711004 156711004 G T RP11-6F2.3 5'Flank 0.20 TCGA-CR-7388-01 3 158399882 158399882 T A GFM1 Nonsense_Mutation p.L567* 0.16 TCGA-CR-7388-01 3 160243624 160243624 T A KPNA4 Silent p.P245P 0.19 TCGA-CR-7388-01 3 167750532 167750532 G A GOLIM4 Missense_Mutation p.P318S 0.35 tolerated(0.68) benign(0.039) TCGA-CR-7388-01 3 172025215 172025215 A T FNDC3B Missense_Mutation p.H375L 0.21 tolerated(0.68) benign(0) TCGA-CR-7388-01 3 173322659 173322659 G T NLGN1 Missense_Mutation p.G91W 0.31 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 3 173998723 173998723 A C NLGN1 Missense_Mutation p.K701T 0.20 deleterious(0) probably_damaging(0.986) TCGA-CR-7388-01 3 173999063 173999063 C - NLGN1 Frame_Shift_Del p.H816Ifs*19 0.26 TCGA-CR-7388-01 3 182937691 182937691 G C MCF2L2 Missense_Mutation p.P775A 0.06 deleterious(0.05) probably_damaging(0.93) TCGA-CR-7388-01 3 183905711 183905711 C T ABCF3 Missense_Mutation p.S170F 0.09 deleterious(0.01) possibly_damaging(0.753) TCGA-CR-7388-01 3 30691867 30691867 G A TGFBR2 Missense_Mutation p.M148I 0.12 deleterious(0) possibly_damaging(0.847) TCGA-CR-7388-01 3 40231679 40231679 C A MYRIP Silent p.R464R 0.26 TCGA-CR-7388-01 3 42793455 42793455 C T CCDC13 Silent p.P192P 0.29 TCGA-CR-7388-01 3 44489577 44489577 G A ZNF445 Missense_Mutation p.A529V 0.11 tolerated(1) possibly_damaging(0.798) TCGA-CR-7388-01 3 4847887 4847887 A G ITPR1 Missense_Mutation p.H2388R 0.38 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 3 52404172 52404172 C T DNAH1 Missense_Mutation p.S2062L 0.12 possibly_damaging(0.735) TCGA-CR-7388-01 3 52852070 52852070 T C ITIH4 Missense_Mutation p.Q765R 0.29 tolerated(0.06) probably_damaging(0.991) TCGA-CR-7388-01 3 74350577 74350577 G A CNTN3 Silent p.P689P 0.17 TCGA-CR-7388-01 3 87018032 87018032 C A VGLL3 Silent p.V215V 0.31 TCGA-CR-7388-01 3 97852332 97852332 C G OR5H1 Missense_Mutation p.S264C 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-CR-7388-01 3 97852367 97852367 C G OR5H1 Missense_Mutation p.L276V 0.10 tolerated(0.15) benign(0.116) TCGA-CR-7388-01 3 9796474 9796474 G C OGG1 Missense_Mutation p.E218Q 0.22 tolerated(0.09) benign(0.01) TCGA-CR-7388-01 4 106156786 106156786 G T TET2 Nonsense_Mutation p.G563* 0.22 TCGA-CR-7388-01 4 120240198 120240198 A T FABP2 Nonstop_Mutation p.*133Rext*34 0.16 TCGA-CR-7388-01 4 122734498 122734498 G A EXOSC9 Missense_Mutation p.E313K 0.08 tolerated(0.24) benign(0.012) TCGA-CR-7388-01 4 125593540 125593540 T C ANKRD50 Missense_Mutation p.K298E 0.23 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 4 126242430 126242430 C G FAT4 Missense_Mutation p.Q1622E 0.13 benign(0.009) TCGA-CR-7388-01 4 128685492 128685492 G A SLC25A31 Missense_Mutation p.R152Q 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-CR-7388-01 4 146806946 146806946 G A ZNF827 Missense_Mutation p.P544L 0.12 deleterious(0.01) benign(0.029) TCGA-CR-7388-01 4 149357050 149357050 C A NR3C2 Silent p.T321T 0.17 TCGA-CR-7388-01 4 151000270 151000270 T C DCLK2 Missense_Mutation p.S31P 0.35 deleterious(0.04) possibly_damaging(0.491) TCGA-CR-7388-01 4 155236942 155236942 C A DCHS2 Missense_Mutation p.G1285W 0.09 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 4 156289867 156289867 T A MAP9 Silent p.G193G 0.15 TCGA-CR-7388-01 4 17528565 17528565 G A CLRN2 Missense_Mutation p.E187K 0.14 tolerated(0.83) benign(0.362) TCGA-CR-7388-01 4 175749997 175749997 C T GLRA3 5'UTR 0.10 TCGA-CR-7388-01 4 186508764 186508764 G A SORBS2 3'UTR 0.17 TCGA-CR-7388-01 4 188924519 188924519 C A ZFP42 Missense_Mutation p.S186R 0.25 tolerated(0.86) benign(0.044) TCGA-CR-7388-01 4 189018247 189018247 C G TRIML2 Missense_Mutation p.R188T 0.10 tolerated(0.85) benign(0.001) TCGA-CR-7388-01 4 44177183 44177183 C A KCTD8 Missense_Mutation p.G349V 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7388-01 4 52938153 52938153 C A SPATA18 Silent p.R197R 0.15 TCGA-CR-7388-01 4 55131137 55131137 C A PDGFRA Nonsense_Mutation p.S227* 0.20 TCGA-CR-7388-01 4 70079865 70079865 G T UGT2B11 Silent p.S192S 0.18 TCGA-CR-7388-01 4 71347573 71347573 T C MUC7 Missense_Mutation p.I371T 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-CR-7388-01 4 71396868 71396868 G T AMTN Missense_Mutation p.G157V 0.25 deleterious(0) benign(0.002) TCGA-CR-7388-01 4 72897759 72897759 C G NPFFR2 Missense_Mutation p.S47R 0.16 tolerated_low_confidence(0.36) benign(0.002) TCGA-CR-7388-01 4 74043106 74043106 C T ANKRD17 Missense_Mutation p.E180K 0.08 possibly_damaging(0.624) TCGA-CR-7388-01 4 7435451 7435451 C T PSAPL1 Missense_Mutation p.E386K 0.33 tolerated(0.92) benign(0.017) TCGA-CR-7388-01 4 78528901 78528901 C A CXCL13 Missense_Mutation p.Q37K 0.20 tolerated(0.87) benign(0.066) TCGA-CR-7388-01 4 79455626 79455626 A T FRAS1 Missense_Mutation p.Q3650L 0.18 benign(0.266) TCGA-CR-7388-01 4 85781681 85781681 C G WDFY3 Missense_Mutation p.A22P 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-CR-7388-01 4 90857200 90857200 T G MMRN1 Missense_Mutation p.V790G 0.11 deleterious(0) possibly_damaging(0.556) TCGA-CR-7388-01 4 94750474 94750474 G C ATOH1 Missense_Mutation p.G133R 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7388-01 4 95223375 95223375 C T HPGDS Silent p.L119L 0.21 TCGA-CR-7388-01 4 96256640 96256640 G T UNC5C Silent p.T89T 0.31 TCGA-CR-7388-01 5 11018126 11018126 C T CTNND2 Missense_Mutation p.S1015N 0.07 deleterious(0.04) benign(0.033) TCGA-CR-7388-01 5 11364946 11364946 C G CTNND2 Missense_Mutation p.A412P 0.15 tolerated(0.5) benign(0.005) TCGA-CR-7388-01 5 118469789 118469789 G C DMXL1 Missense_Mutation p.E724Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 5 127647623 127647623 G C FBN2 Silent p.P1634P 0.17 TCGA-CR-7388-01 5 127648347 127648347 T A FBN2 Missense_Mutation p.T1620S 0.19 tolerated(0.11) benign(0.002) TCGA-CR-7388-01 5 127686626 127686626 G A FBN2 Silent p.L916L 0.08 TCGA-CR-7388-01 5 129039981 129039981 C T ADAMTS19 Missense_Mutation p.T1064I 0.08 deleterious(0) probably_damaging(0.942) TCGA-CR-7388-01 5 129520705 129520705 C G CHSY3 Missense_Mutation p.L624V 0.21 tolerated(0.36) possibly_damaging(0.456) TCGA-CR-7388-01 5 131879137 131879137 G C IL5 Missense_Mutation p.L12V 0.06 deleterious(0.04) possibly_damaging(0.794) TCGA-CR-7388-01 5 131973799 131973799 G A RAD50 Missense_Mutation p.D1168N 0.16 tolerated(0.13) possibly_damaging(0.677) TCGA-CR-7388-01 5 134143458 134143458 G A DDX46 Missense_Mutation p.D659N 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 5 140215588 140215588 G C PCDHA7 Silent p.A540A 0.18 TCGA-CR-7388-01 5 140516518 140516518 C G PCDHB5 Missense_Mutation p.S501C 0.20 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-CR-7388-01 5 140531479 140531479 G C PCDHB6 Missense_Mutation p.L547F 0.21 deleterious(0) possibly_damaging(0.52) TCGA-CR-7388-01 5 140554222 140554222 G T PCDHB7 Silent p.L602L 0.14 TCGA-CR-7388-01 5 140590115 140590115 C A PCDHB12 Missense_Mutation p.L546M 0.19 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-CR-7388-01 5 140604970 140604970 C A PCDHB14 Missense_Mutation p.S631R 0.12 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-CR-7388-01 5 140752193 140752193 C A PCDHGB3 Missense_Mutation p.S744R 0.10 deleterious(0.04) possibly_damaging(0.766) TCGA-CR-7388-01 5 140755150 140755150 C A PCDHGA6 Silent p.P500P 0.15 TCGA-CR-7388-01 5 140764245 140764245 G C PCDHGA7 Silent p.A593A 0.18 TCGA-CR-7388-01 5 140764339 140764339 G A PCDHGA7 Missense_Mutation p.E625K 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CR-7388-01 5 140798050 140798050 C G PCDHGB7 Missense_Mutation p.H208Q 0.33 deleterious(0.02) probably_damaging(0.945) TCGA-CR-7388-01 5 149006649 149006649 C T ARHGEF37 Missense_Mutation p.P492L 0.21 deleterious(0) probably_damaging(0.932) TCGA-CR-7388-01 5 156566373 156566373 C T MED7 Missense_Mutation p.E24K 0.21 tolerated(0.05) probably_damaging(0.955) TCGA-CR-7388-01 5 156770191 156770191 G A FNDC9 Silent p.A118A 0.21 TCGA-CR-7388-01 5 161119065 161119065 C T GABRA6 Silent p.F315F 0.10 TCGA-CR-7388-01 5 169714999 169714999 G C LCP2 Missense_Mutation p.Q55E 0.23 deleterious(0.01) benign(0.083) TCGA-CR-7388-01 5 171471924 171471924 C T STK10 Missense_Mutation p.A957T 0.17 tolerated_low_confidence(0.37) benign(0) TCGA-CR-7388-01 5 173376544 173376544 C G CPEB4 Missense_Mutation p.P497R 0.18 tolerated(0.12) benign(0.182) TCGA-CR-7388-01 5 176026208 176026208 C T GPRIN1 Missense_Mutation p.D210N 0.08 tolerated(0.05) possibly_damaging(0.503) TCGA-CR-7388-01 5 178416278 178416278 G A GRM6 Missense_Mutation p.R381C 0.30 deleterious(0) possibly_damaging(0.892) TCGA-CR-7388-01 5 180477289 180477289 C G BTNL9 Missense_Mutation p.A219G 0.20 tolerated(0.93) benign(0) TCGA-CR-7388-01 5 23527092 23527092 G T PRDM9 Missense_Mutation p.G632V 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7388-01 5 36953855 36953855 C T NIPBL Silent p.L19L 0.23 TCGA-CR-7388-01 5 37003451 37003451 T C NIPBL Splice_Site p.X1285_splice 0.12 TCGA-CR-7388-01 5 39341354 39341354 C T C9 Missense_Mutation p.D124N 0.13 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 5 41904501 41904501 G A C5orf51 Missense_Mutation p.R11Q 0.16 tolerated_low_confidence(0.06) unknown(0) TCGA-CR-7388-01 5 5237159 5237159 G T ADAMTS16 Missense_Mutation p.G701W 0.22 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 5 5462953 5462953 G A KIAA0947 Missense_Mutation p.R1169K 0.30 tolerated(0.83) benign(0.023) TCGA-CR-7388-01 5 63256751 63256751 C G HTR1A Missense_Mutation p.G266R 0.08 tolerated(0.64) benign(0.014) TCGA-CR-7388-01 5 6611186 6611186 C T NSUN2 Missense_Mutation p.D370N 0.21 tolerated(0.14) benign(0.021) TCGA-CR-7388-01 5 71482446 71482446 C A MAP1B Silent p.R125R 0.14 TCGA-CR-7388-01 5 79030276 79030276 G T CMYA5 Missense_Mutation p.L1896F 0.17 probably_damaging(0.986) TCGA-CR-7388-01 5 79945217 79945217 C T DHFR Missense_Mutation p.R78K 0.20 tolerated(0.15) benign(0.019) TCGA-CR-7388-01 5 80376426 80376426 G C RASGRF2 Missense_Mutation p.D327H 0.14 deleterious(0) probably_damaging(0.982) TCGA-CR-7388-01 5 85578561 85578561 C T NBPF22P RNA 0.17 TCGA-CR-7388-01 5 90073767 90073767 G C GPR98 Missense_Mutation p.W4191C 0.21 possibly_damaging(0.893) TCGA-CR-7388-01 5 94842665 94842665 G A TTC37 Missense_Mutation p.A1022V 0.15 tolerated(0.2) benign(0.089) TCGA-CR-7388-01 6 100868714 100868714 G A SIM1 Silent p.S373S 0.23 TCGA-CR-7388-01 6 129513899 129513899 G T LAMA2 Missense_Mutation p.L561F 0.14 tolerated(0.67) benign(0.001) TCGA-CR-7388-01 6 131222264 131222264 G C EPB41L2 Missense_Mutation p.S329C 0.14 deleterious(0) probably_damaging(0.991) TCGA-CR-7388-01 6 151939225 151939225 A G CCDC170 Silent p.K697K 0.16 TCGA-CR-7388-01 6 152786534 152786534 G C SYNE1 Silent p.L597L 0.16 TCGA-CR-7388-01 6 152826448 152826448 C A SYNE1 Silent p.P222P 0.21 TCGA-CR-7388-01 6 154763316 154763316 C T CNKSR3 Missense_Mutation p.D109N 0.11 deleterious(0) benign(0.051) TCGA-CR-7388-01 6 158516991 158516991 T C SYNJ2 Silent p.N1362N 0.17 TCGA-CR-7388-01 6 160328648 160328648 T G MAS1 Missense_Mutation p.S221A 0.13 tolerated(0.61) benign(0.002) TCGA-CR-7388-01 6 161127476 161127476 G C PLG Missense_Mutation p.Q29H 0.16 deleterious(0.02) benign(0.02) TCGA-CR-7388-01 6 17764532 17764532 C T KIF13A Missense_Mutation p.E1743K 0.31 deleterious_low_confidence(0.01) benign(0.021) TCGA-CR-7388-01 6 17817357 17817357 G A KIF13A Missense_Mutation p.R632C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 6 24843287 24843287 C G FAM65B Missense_Mutation p.E575Q 0.09 tolerated(0.06) probably_damaging(0.996) TCGA-CR-7388-01 6 24873906 24873906 C G FAM65B Missense_Mutation p.E75Q 0.17 deleterious(0.01) possibly_damaging(0.877) TCGA-CR-7388-01 6 26271337 26271337 G T HIST1H3G Silent p.A92A 0.19 TCGA-CR-7388-01 6 27925414 27925414 C A OR2B6 Nonsense_Mutation p.Y132* 0.08 TCGA-CR-7388-01 6 28971724 28971724 T G ZNF311 Missense_Mutation p.E3A 0.14 deleterious_low_confidence(0.04) benign(0.007) TCGA-CR-7388-01 6 29365065 29365065 C A OR12D2 Missense_Mutation p.L197I 0.28 tolerated(0.21) benign(0.12) TCGA-CR-7388-01 6 29430223 29430223 T A OR2H1 Missense_Mutation p.I226N 0.13 deleterious(0) possibly_damaging(0.839) TCGA-CR-7388-01 6 30558533 30558533 C T ABCF1 3'UTR 0.40 TCGA-CR-7388-01 6 30673437 30673437 C A MDC1 Missense_Mutation p.D1175Y 0.29 deleterious(0) probably_damaging(0.936) TCGA-CR-7388-01 6 30863278 30863278 C T DDR1 Silent p.P537P 0.20 TCGA-CR-7388-01 6 30878470 30878470 C T GTF2H4 Nonsense_Mutation p.Q135* 0.15 TCGA-CR-7388-01 6 31112662 31112662 C G CCHCR1 Missense_Mutation p.A689P 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-CR-7388-01 6 32035750 32035750 C G TNXB Missense_Mutation p.E2078Q 0.21 benign(0.022) TCGA-CR-7388-01 6 32037926 32037926 A C TNXB Silent p.P1752P 0.29 TCGA-CR-7388-01 6 33652196 33652196 G C ITPR3 Missense_Mutation p.R1667P 0.24 deleterious(0.01) possibly_damaging(0.669) TCGA-CR-7388-01 6 35087972 35087972 C T TCP11 Missense_Mutation p.R373H 0.11 tolerated(0.56) benign(0.051) TCGA-CR-7388-01 6 36767803 36767803 G A CPNE5 Silent p.F76F 0.20 TCGA-CR-7388-01 6 52993189 52993189 C T GCM1 Missense_Mutation p.V376I 0.08 tolerated(0.66) benign(0.002) TCGA-CR-7388-01 6 56044743 56044743 G A COL21A1 Silent p.L91L 0.26 TCGA-CR-7388-01 6 56473360 56473360 G A DST Intron 0.17 TCGA-CR-7388-01 6 56484118 56484118 G A DST Intron 0.08 TCGA-CR-7388-01 6 57013446 57013446 G C ZNF451 Missense_Mutation p.D855H 0.10 tolerated_low_confidence(0.06) possibly_damaging(0.681) TCGA-CR-7388-01 6 57512590 57512590 C G PRIM2 3'UTR 0.04 TCGA-CR-7388-01 6 64394442 64394442 G C PHF3 Missense_Mutation p.L273F 0.07 deleterious_low_confidence(0.01) benign(0.157) TCGA-CR-7388-01 6 69949029 69949029 G C BAI3 Missense_Mutation p.E909Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-CR-7388-01 6 73919739 73919739 C G RP11-257K9.8 3'UTR 0.11 TCGA-CR-7388-01 7 100175789 100175789 C G LRCH4 Missense_Mutation p.G314A 0.35 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 7 100276365 100276365 G A GNB2 Missense_Mutation p.D322N 0.08 tolerated(0.17) benign(0.149) TCGA-CR-7388-01 7 100486895 100486895 C G UFSP1 5'UTR 0.19 TCGA-CR-7388-01 7 100685079 100685079 C G MUC17 Nonsense_Mutation p.S3461* 0.27 TCGA-CR-7388-01 7 101843412 101843412 C G CUX1 Missense_Mutation p.I685M 0.07 deleterious(0) unknown(0) TCGA-CR-7388-01 7 103138678 103138678 C G RELN Missense_Mutation p.D2897H 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7388-01 7 105516849 105516849 G T ATXN7L1 Missense_Mutation p.D52E 0.37 tolerated(0.65) benign(0.021) TCGA-CR-7388-01 7 106509407 106509407 G T PIK3CG Silent p.L467L 0.33 TCGA-CR-7388-01 7 107340590 107340590 C T SLC26A4 Silent p.V559V 0.36 TCGA-CR-7388-01 7 136699801 136699801 C G CHRM2 Missense_Mutation p.F63L 0.09 tolerated(1) possibly_damaging(0.601) TCGA-CR-7388-01 7 140449137 140449137 C G BRAF Missense_Mutation p.E648Q 0.17 deleterious(0.01) probably_damaging(1) TCGA-CR-7388-01 7 141315363 141315363 C A AGK Silent p.V172V 0.10 TCGA-CR-7388-01 7 141673226 141673226 C T TAS2R38 Silent p.L88L 0.09 TCGA-CR-7388-01 7 141736654 141736654 C T MGAM Missense_Mutation p.S703F 0.06 tolerated(0.07) probably_damaging(0.938) TCGA-CR-7388-01 7 143453682 143453682 T A CTAGE6 Missense_Mutation p.K357I 0.16 deleterious(0) possibly_damaging(0.847) TCGA-CR-7388-01 7 143701434 143701434 G C OR6B1 Silent p.L115L 0.34 TCGA-CR-7388-01 7 154684701 154684701 C T DPP6 3'UTR 0.43 TCGA-CR-7388-01 7 15652147 15652147 C T MEOX2 Silent p.V260V 0.08 TCGA-CR-7388-01 7 15725621 15725621 G C MEOX2 Missense_Mutation p.S136C 0.10 deleterious(0.03) benign(0.037) TCGA-CR-7388-01 7 21779240 21779240 C T DNAH11 Silent p.V2628V 0.16 TCGA-CR-7388-01 7 2259027 2259027 C A MAD1L1 Missense_Mutation p.R179L 0.27 deleterious(0.01) benign(0.115) TCGA-CR-7388-01 7 2275158 2275158 G C FTSJ2 Missense_Mutation p.L114V 0.15 deleterious(0.01) possibly_damaging(0.871) TCGA-CR-7388-01 7 2297046 2297046 T C SNX8 Missense_Mutation p.N363S 0.22 tolerated(1) benign(0.003) TCGA-CR-7388-01 7 29111998 29111998 G A CPVL Silent p.I217I 0.29 TCGA-CR-7388-01 7 29980412 29980412 G C SCRN1 Missense_Mutation p.Q229E 0.10 tolerated(0.32) benign(0.005) TCGA-CR-7388-01 7 32908969 32908969 T C KBTBD2 Silent p.L620L 0.11 TCGA-CR-7388-01 7 36461541 36461541 G C ANLN Missense_Mutation p.E747Q 0.08 deleterious(0.03) possibly_damaging(0.583) TCGA-CR-7388-01 7 37955825 37955825 G T SFRP4 Silent p.R105R 0.20 TCGA-CR-7388-01 7 43548833 43548833 G C HECW1 Intron 0.28 TCGA-CR-7388-01 7 4796623 4796623 A G FOXK1 Splice_Site p.X351_splice 0.14 TCGA-CR-7388-01 7 53103985 53103985 G T POM121L12 Missense_Mutation p.R207S 0.25 deleterious(0.05) possibly_damaging(0.765) TCGA-CR-7388-01 7 54636715 54636715 T A VSTM2A Silent p.A216A 0.18 TCGA-CR-7388-01 7 57194383 57194383 C G ZNF479 Missense_Mutation p.E28Q 0.20 deleterious(0) benign(0.326) TCGA-CR-7388-01 7 6456202 6456202 C G DAGLB Intron 0.19 TCGA-CR-7388-01 7 73184251 73184251 C T CLDN3 Silent p.Q43Q 0.09 TCGA-CR-7388-01 7 75189091 75189091 G A HIP1 Silent p.L440L 0.17 TCGA-CR-7388-01 7 77824251 77824251 G C MAGI2 Missense_Mutation p.P737A 0.15 tolerated(0.2) benign(0.304) TCGA-CR-7388-01 7 80394477 80394477 G C SEMA3C Silent p.V479V 0.05 TCGA-CR-7388-01 7 82581261 82581261 C T PCLO Missense_Mutation p.G3003E 0.05 unknown(0) TCGA-CR-7388-01 7 87148655 87148655 C G ABCB1 Missense_Mutation p.E972Q 0.09 tolerated(0.3) benign(0.016) TCGA-CR-7388-01 7 88965082 88965082 T C ZNF804B Missense_Mutation p.L929S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7388-01 7 88965672 88965672 G C ZNF804B Missense_Mutation p.D1126H 0.08 deleterious(0.01) probably_damaging(1) TCGA-CR-7388-01 7 89982159 89982159 C G GTPBP10 Silent p.L21L 0.09 TCGA-CR-7388-01 7 92085756 92085756 C G GATAD1 Missense_Mutation p.F230L 0.05 deleterious(0.01) possibly_damaging(0.837) TCGA-CR-7388-01 7 94052383 94052383 C A COL1A2 Missense_Mutation p.P840T 0.39 unknown(0) TCGA-CR-7388-01 7 95157454 95157454 G C ASB4 Missense_Mutation p.E273Q 0.39 tolerated(0.24) possibly_damaging(0.889) TCGA-CR-7388-01 7 96318251 96318251 C G SHFM1 Missense_Mutation p.K66N 0.07 deleterious(0.01) probably_damaging(0.95) TCGA-CR-7388-01 7 97851742 97851742 C G TECPR1 Missense_Mutation p.G1007A 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-CR-7388-01 7 99092065 99092065 G A ZNF394 Missense_Mutation p.S258F 0.05 deleterious(0.03) probably_damaging(0.995) TCGA-CR-7388-01 7 99779813 99779813 C A STAG3 Missense_Mutation p.P73T 0.23 tolerated(0.09) benign(0.032) TCGA-CR-7388-01 8 102381147 102381147 G A NACAP1 RNA 0.33 TCGA-CR-7388-01 8 107715290 107715290 G A OXR1 Missense_Mutation p.D279N 0.39 tolerated(0.29) benign(0.32) TCGA-CR-7388-01 8 107763141 107763141 A G OXR1 Missense_Mutation p.Q866R 0.23 tolerated(0.05) benign(0.071) TCGA-CR-7388-01 8 110100017 110100017 C A TRHR Silent p.V92V 0.34 TCGA-CR-7388-01 8 110293364 110293364 C G NUDCD1 Missense_Mutation p.L287F 0.07 deleterious(0.01) possibly_damaging(0.557) TCGA-CR-7388-01 8 110420425 110420425 C G PKHD1L1 Nonsense_Mutation p.S654* 0.20 TCGA-CR-7388-01 8 110984839 110984839 G T KCNV1 Silent p.G213G 0.41 TCGA-CR-7388-01 8 113243846 113243846 C T CSMD3 Missense_Mutation p.D3586N 0.07 tolerated(0.06) benign(0.142) TCGA-CR-7388-01 8 113562955 113562955 G T CSMD3 Silent p.I1503I 0.09 TCGA-CR-7388-01 8 121295907 121295907 A G COL14A1 Missense_Mutation p.Y1286C 0.31 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 8 125132082 125132082 A G FER1L6 3'UTR 0.38 TCGA-CR-7388-01 8 139263149 139263149 G T FAM135B Missense_Mutation p.F159L 0.14 deleterious(0) probably_damaging(0.916) TCGA-CR-7388-01 8 139729092 139729092 G A COL22A1 Silent p.G792G 0.22 TCGA-CR-7388-01 8 139790645 139790645 G T COL22A1 Missense_Mutation p.P570H 0.20 unknown(0) TCGA-CR-7388-01 8 143783130 143783130 G C LY6K Silent p.V72V 0.15 TCGA-CR-7388-01 8 145649363 145649363 C - VPS28 Frame_Shift_Del p.S204Afs*6 0.18 TCGA-CR-7388-01 8 145773627 145773627 G A ARHGAP39 Silent p.L281L 0.22 TCGA-CR-7388-01 8 19811807 19811807 C T LPL Nonsense_Mutation p.Q240* 0.17 TCGA-CR-7388-01 8 30702709 30702709 C G TEX15 Silent p.V1275V 0.28 TCGA-CR-7388-01 8 48697804 48697804 G A PRKDC Silent p.F3658F 0.15 TCGA-CR-7388-01 8 57026507 57026507 C A MOS Missense_Mutation p.R12L 0.18 deleterious(0.01) benign(0.001) TCGA-CR-7388-01 8 72127676 72127676 A G EYA1 Missense_Mutation p.Y515H 0.36 deleterious(0.02) probably_damaging(0.95) TCGA-CR-7388-01 8 73849296 73849296 C G KCNB2 Missense_Mutation p.A569G 0.08 tolerated_low_confidence(0.4) benign(0) TCGA-CR-7388-01 8 77617387 77617387 G C ZFHX4 Missense_Mutation p.G355A 0.11 possibly_damaging(0.899) TCGA-CR-7388-01 8 77765696 77765696 C G ZFHX4 Missense_Mutation p.T2180R 0.38 probably_damaging(0.999) TCGA-CR-7388-01 8 77776817 77776817 C G ZFHX4 3'UTR 0.15 TCGA-CR-7388-01 8 93023245 93023245 G T RUNX1T1 Silent p.V192V 0.11 TCGA-CR-7388-01 8 95680467 95680467 G A ESRP1 Missense_Mutation p.E408K 0.13 deleterious(0) possibly_damaging(0.51) TCGA-CR-7388-01 8 97270606 97270606 C G MTERFD1 Missense_Mutation p.D105H 0.14 deleterious(0.03) possibly_damaging(0.877) TCGA-CR-7388-01 9 104187801 104187801 T A ALDOB Missense_Mutation p.T245S 0.21 tolerated(1) benign(0.01) TCGA-CR-7388-01 9 112899231 112899231 A G PALM2-AKAP2 Silent p.A469A 0.22 TCGA-CR-7388-01 9 113208279 113208279 C G SVEP1 Missense_Mutation p.G1434A 0.12 benign(0.311) TCGA-CR-7388-01 9 121976297 121976297 C G BRINP1 Silent p.P274P 0.16 TCGA-CR-7388-01 9 122075438 122075438 T C BRINP1 Missense_Mutation p.T66A 0.14 deleterious(0.03) benign(0.052) TCGA-CR-7388-01 9 123930380 123930380 C T CNTRL Nonsense_Mutation p.Q1951* 0.20 TCGA-CR-7388-01 9 127998972 127998972 C T HSPA5 Missense_Mutation p.E622K 0.39 tolerated_low_confidence(0.29) benign(0.008) TCGA-CR-7388-01 9 130551532 130551532 G A CDK9 Missense_Mutation p.D277N 0.26 deleterious(0.04) benign(0.013) TCGA-CR-7388-01 9 131704027 131704027 G T PHYHD1 Missense_Mutation p.G297W 0.33 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CR-7388-01 9 132482945 132482945 C T PRRX2 Missense_Mutation p.S173L 0.14 tolerated(0.08) benign(0.033) TCGA-CR-7388-01 9 134073156 134073156 C G NUP214 Missense_Mutation p.I1425M 0.14 benign(0.197) TCGA-CR-7388-01 9 134073548 134073548 C G NUP214 Missense_Mutation p.S1556C 0.12 benign(0.424) TCGA-CR-7388-01 9 134073559 134073559 C A NUP214 Missense_Mutation p.L1560I 0.12 benign(0.248) TCGA-CR-7388-01 9 139371758 139371758 G A SEC16A Nonsense_Mutation p.Q104* 0.10 TCGA-CR-7388-01 9 18928826 18928826 C T FAM154A Missense_Mutation p.E217K 0.13 deleterious(0.03) probably_damaging(1) TCGA-CR-7388-01 9 27036539 27036539 G A IFT74 Intron 0.15 TCGA-CR-7388-01 9 32418476 32418476 A G ACO1 Missense_Mutation p.T209A 0.23 deleterious(0) possibly_damaging(0.864) TCGA-CR-7388-01 9 35707190 35707190 C G TLN1 Missense_Mutation p.G1612R 0.18 tolerated(0.54) probably_damaging(0.973) TCGA-CR-7388-01 9 35716451 35716451 C A TLN1 Missense_Mutation p.R854L 0.20 deleterious(0.01) probably_damaging(0.968) TCGA-CR-7388-01 9 35801681 35801681 G T NPR2 Missense_Mutation p.R493L 0.33 deleterious(0) benign(0.409) TCGA-CR-7388-01 9 37740292 37740292 G T FRMPD1 Silent p.A589A 0.17 TCGA-CR-7388-01 9 43626924 43626924 C A SPATA31A6 Missense_Mutation p.S588I 0.09 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 9 5754839 5754839 A T KIAA1432 Splice_Site p.X535_splice 0.26 TCGA-CR-7388-01 9 74360399 74360399 C A TMEM2 Missense_Mutation p.G190V 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 9 82227616 82227616 C G TLE4 Missense_Mutation p.P100A 0.06 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 9 84603894 84603894 C - SPATA31D1 Frame_Shift_Del p.E55Kfs*45 0.21 TCGA-CR-7388-01 9 84606461 84606461 G T SPATA31D1 Missense_Mutation p.W359L 0.15 deleterious(0) possibly_damaging(0.595) TCGA-CR-7388-01 9 8517884 8517884 G T PTPRD Missense_Mutation p.L503I 0.27 tolerated(0.37) probably_damaging(0.996) TCGA-CR-7388-01 9 86414160 86414160 G C GKAP1 Missense_Mutation p.N100K 0.20 tolerated(0.34) benign(0.005) TCGA-CR-7388-01 9 86452160 86452160 T C KIF27 Missense_Mutation p.N1321S 0.46 tolerated(0.11) benign(0.002) TCGA-CR-7388-01 9 98270530 98270530 C - PTCH1 Frame_Shift_Del p.L39Cfs*41 0.36 TCGA-CR-7388-01 X 100912607 100912607 G T ARMCX2 5'UTR 0.17 TCGA-CR-7388-01 X 10092369 10092369 G T WWC3 Missense_Mutation p.V606L 0.32 tolerated(0.41) benign(0.114) TCGA-CR-7388-01 X 101381993 101381993 C T TCEAL2 Missense_Mutation p.P64L 0.33 tolerated(0.11) possibly_damaging(0.908) TCGA-CR-7388-01 X 101572257 101572257 C T NXF2 Intron 0.14 TCGA-CR-7388-01 X 101857875 101857875 C T ARMCX5 Missense_Mutation p.P269L 0.08 tolerated(0.1) benign(0.028) TCGA-CR-7388-01 X 101910570 101910570 G A GPRASP1 Missense_Mutation p.E577K 0.12 tolerated(0.12) possibly_damaging(0.494) TCGA-CR-7388-01 X 102192824 102192824 A G RAB40AL Missense_Mutation p.Q193R 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-CR-7388-01 X 102632528 102632528 C A NGFRAP1 Silent p.R37R 0.06 TCGA-CR-7388-01 X 105011308 105011308 C G IL1RAPL2 Missense_Mutation p.S572C 0.11 tolerated(0.06) possibly_damaging(0.894) TCGA-CR-7388-01 X 107148729 107148729 G C MID2 Missense_Mutation p.A316P 0.06 deleterious(0.03) possibly_damaging(0.869) TCGA-CR-7388-01 X 107320689 107320689 C G VSIG1 3'UTR 0.15 TCGA-CR-7388-01 X 107868952 107868952 G - COL4A5 Frame_Shift_Del p.G1012Vfs*9 0.12 TCGA-CR-7388-01 X 107977922 107977922 G T IRS4 Silent p.G551G 0.08 TCGA-CR-7388-01 X 108921236 108921236 G A ACSL4 Missense_Mutation p.P345L 0.08 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 X 112025794 112025794 A G AMOT Silent p.N738N 0.07 TCGA-CR-7388-01 X 11272776 11272776 C G ARHGAP6 Missense_Mutation p.V214L 0.09 deleterious(0) probably_damaging(0.978) TCGA-CR-7388-01 X 115590165 115590165 T C SLC6A14 3'UTR 0.14 TCGA-CR-7388-01 X 119054534 119054534 C T AKAP14 Silent p.F186F 0.14 TCGA-CR-7388-01 X 120183197 120183197 T C GLUD2 Silent p.A553A 0.16 TCGA-CR-7388-01 X 123504074 123504074 A T SH2D1A Missense_Mutation p.I84F 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 X 123805604 123805604 C A TENM1 Missense_Mutation p.R366M 0.13 tolerated_low_confidence(0.09) benign(0.264) TCGA-CR-7388-01 X 125299012 125299012 A T DCAF12L2 Missense_Mutation p.L299Q 0.16 deleterious(0.05) benign(0.081) TCGA-CR-7388-01 X 12937728 12937728 C A TLR8 Missense_Mutation p.T190N 0.25 tolerated(0.18) benign(0.005) TCGA-CR-7388-01 X 129759343 129759343 G T ENOX2 Missense_Mutation p.A593D 0.07 deleterious(0) probably_damaging(0.998) TCGA-CR-7388-01 X 130416528 130416528 A T IGSF1 Missense_Mutation p.L379H 0.19 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 X 130417184 130417184 C A IGSF1 Missense_Mutation p.G241V 0.23 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 X 131228105 131228105 T C FRMD7 Missense_Mutation p.N116S 0.09 tolerated(0.1) benign(0.307) TCGA-CR-7388-01 X 132162111 132162111 T - USP26 Frame_Shift_Del p.K46Nfs*7 0.22 TCGA-CR-7388-01 X 132351842 132351842 G A TFDP3 Missense_Mutation p.S149L 0.17 tolerated(0.49) benign(0) TCGA-CR-7388-01 X 133979247 133979247 G A FAM122C Missense_Mutation p.D87N 0.11 tolerated(0.13) benign(0.008) TCGA-CR-7388-01 X 134681181 134681181 A G DDX26B Missense_Mutation p.I245V 0.05 tolerated(1) benign(0) TCGA-CR-7388-01 X 135961278 135961278 G A RBMX Silent p.L38L 0.07 TCGA-CR-7388-01 X 139586788 139586788 G T SOX3 Missense_Mutation p.F146L 0.33 deleterious(0) probably_damaging(0.977) TCGA-CR-7388-01 X 1407736 1407736 C T CSF2RA Missense_Mutation p.T143M 0.15 deleterious(0.01) probably_damaging(0.938) TCGA-CR-7388-01 X 140926157 140926157 G T MAGEC3 Missense_Mutation p.G19V 0.22 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-CR-7388-01 X 140984249 140984249 G A MAGEC3 Intron 0.21 TCGA-CR-7388-01 X 140994191 140994191 C A MAGEC1 Missense_Mutation p.P334H 0.17 deleterious_low_confidence(0) unknown(0) TCGA-CR-7388-01 X 140996681 140996681 G T MAGEC1 3'UTR 0.29 TCGA-CR-7388-01 X 142803876 142803876 A T SPANXN2 5'UTR 0.23 TCGA-CR-7388-01 X 145075797 145075797 A T MIR890 RNA 0.11 TCGA-CR-7388-01 X 146271282 146271282 C T MIR513C RNA 0.19 TCGA-CR-7388-01 X 153132810 153132810 C A L1CAM Splice_Site p.X713_splice 0.07 TCGA-CR-7388-01 X 153132824 153132824 G C L1CAM Silent p.V708V 0.05 TCGA-CR-7388-01 X 153539314 153539314 C G TKTL1 Missense_Mutation p.H160D 0.08 deleterious(0) benign(0.21) TCGA-CR-7388-01 X 153648522 153648522 C A TAZ Intron 0.05 TCGA-CR-7388-01 X 153906346 153906346 C A GAB3 3'UTR 0.18 TCGA-CR-7388-01 X 153997472 153997472 G A DKC1 Missense_Mutation p.D268N 0.07 deleterious(0) probably_damaging(1) TCGA-CR-7388-01 X 15863569 15863569 C A AP1S2 Missense_Mutation p.G120V 0.21 deleterious(0) probably_damaging(0.999) TCGA-CR-7388-01 X 17746379 17746379 G T NHS Missense_Mutation p.A1364S 0.32 tolerated(0.17) benign(0.253) TCGA-CR-7388-01 X 18221663 18221663 G T BEND2 Missense_Mutation p.P289T 0.22 deleterious(0.04) benign(0.174) TCGA-CR-7388-01 X 18660202 18660202 G T RS1 Silent p.I199I 0.24 TCGA-CR-7388-01 X 18842187 18842187 G A PPEF1 Missense_Mutation p.E550K 0.14 tolerated(0.29) benign(0.008) TCGA-CR-7388-01 X 19854368 19854368 G T SH3KBP1 Missense_Mutation p.Q13K 0.26 deleterious(0.01) benign(0.001) TCGA-CR-7388-01 X 21675204 21675204 G T KLHL34 Missense_Mutation p.R235S 0.54 tolerated(0.11) benign(0.398) TCGA-CR-7388-01 X 21875297 21875297 C T YY2 Missense_Mutation p.P232L 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-CR-7388-01 X 24580396 24580396 C A PCYT1B 3'UTR 0.67 TCGA-CR-7388-01 X 24742495 24742495 C T POLA1 Missense_Mutation p.S409L 0.09 deleterious(0.02) benign(0.094) TCGA-CR-7388-01 X 26212208 26212208 C A MAGEB6 Missense_Mutation p.S82Y 0.22 deleterious(0.03) benign(0.007) TCGA-CR-7388-01 X 27766844 27766844 C G DCAF8L2 Missense_Mutation p.S611C 0.23 deleterious(0) possibly_damaging(0.891) TCGA-CR-7388-01 X 30254265 30254265 T C MAGEB3 Missense_Mutation p.V75A 0.23 tolerated(1) benign(0.01) TCGA-CR-7388-01 X 30269583 30269583 C A MAGEB1 Missense_Mutation p.R325S 0.21 tolerated(0.93) unknown(0) TCGA-CR-7388-01 X 30738843 30738843 C A GK Missense_Mutation p.L442M 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7388-01 X 30872655 30872655 G T TAB3 Missense_Mutation p.P376H 0.21 deleterious(0.03) possibly_damaging(0.579) TCGA-CR-7388-01 X 31792249 31792249 G T DMD Missense_Mutation p.S2457Y 0.23 possibly_damaging(0.781) TCGA-CR-7388-01 X 34149176 34149176 C G FAM47A Missense_Mutation p.G407A 0.16 tolerated(0.21) probably_damaging(0.992) TCGA-CR-7388-01 X 34962278 34962278 C T FAM47B Missense_Mutation p.P444S 0.16 tolerated(0.24) benign(0.017) TCGA-CR-7388-01 X 37850395 37850395 T A CXorf27 Missense_Mutation p.D101E 0.25 deleterious(0.02) benign(0.139) TCGA-CR-7388-01 X 39932751 39932751 G T BCOR Silent p.G616G 0.25 TCGA-CR-7388-01 X 48049698 48049698 G A SSX5 Missense_Mutation p.P154S 0.18 tolerated(0.18) possibly_damaging(0.546) TCGA-CR-7388-01 X 48542680 48542680 C A WAS Silent p.A47A 0.25 TCGA-CR-7388-01 X 48672940 48672940 C A HDAC6 Silent p.G300G 0.15 TCGA-CR-7388-01 X 48826247 48826247 G T KCND1 Silent p.A144A 0.31 TCGA-CR-7388-01 X 48921431 48921431 C A CCDC120 Missense_Mutation p.P75T 0.23 deleterious(0.01) possibly_damaging(0.863) TCGA-CR-7388-01 X 49142667 49142667 G C PPP1R3F Silent p.A505A 0.29 TCGA-CR-7388-01 X 49845250 49845250 G T CLCN5 Splice_Site p.X202_splice 0.33 TCGA-CR-7388-01 X 50089707 50089707 G A CCNB3 Silent p.Q1237Q 0.24 TCGA-CR-7388-01 X 50376525 50376525 G T SHROOM4 Missense_Mutation p.L850I 0.18 tolerated(0.15) benign(0.444) TCGA-CR-7388-01 X 51488376 51488376 G T GSPT2 Missense_Mutation p.V552F 0.25 deleterious(0) probably_damaging(0.923) TCGA-CR-7388-01 X 52844169 52844169 G T XAGE5 Nonsense_Mutation p.E78* 0.10 TCGA-CR-7388-01 X 53571657 53571657 G C HUWE1 Silent p.L3705L 0.05 TCGA-CR-7388-01 X 54472808 54472808 C G FGD1 Missense_Mutation p.E874Q 0.09 tolerated(0.31) possibly_damaging(0.493) TCGA-CR-7388-01 X 54785036 54785036 A T ITIH6 Missense_Mutation p.W491R 0.11 tolerated(1) benign(0.006) TCGA-CR-7388-01 X 54785154 54785154 G T ITIH6 Silent p.R451R 0.25 TCGA-CR-7388-01 X 55248198 55248198 A C PAGE5 Splice_Site p.X48_splice 0.39 TCGA-CR-7388-01 X 57162742 57162742 C G SPIN2A Missense_Mutation p.E97Q 0.10 deleterious(0.04) possibly_damaging(0.646) TCGA-CR-7388-01 X 63412059 63412059 C A AMER1 Nonsense_Mutation p.E370* 0.12 TCGA-CR-7388-01 X 69649711 69649711 C T GDPD2 Intron 0.25 TCGA-CR-7388-01 X 69719860 69719860 T C DLG3 Silent p.Y702Y 0.15 TCGA-CR-7388-01 X 70776893 70776893 C G OGT Missense_Mutation p.R420G 0.08 deleterious(0) probably_damaging(0.91) TCGA-CR-7388-01 X 71359607 71359607 C A NHSL2 Missense_Mutation p.P737T 0.09 tolerated(0.15) benign(0.003) TCGA-CR-7388-01 X 73812474 73812474 C T RLIM Missense_Mutation p.E226K 0.09 deleterious(0.03) unknown(0) TCGA-CR-7388-01 X 76854951 76854951 G A ATRX Missense_Mutation p.S1962F 0.08 probably_damaging(0.994) TCGA-CR-7388-01 X 76938634 76938634 T C ATRX Missense_Mutation p.D705G 0.11 possibly_damaging(0.772) TCGA-CR-7388-01 X 77271303 77271303 G T ATP7A Missense_Mutation p.V851F 0.07 deleterious(0.01) probably_damaging(0.973) TCGA-CR-7388-01 X 78010699 78010699 C A LPAR4 Nonsense_Mutation p.C111* 0.22 TCGA-CR-7388-01 X 78216597 78216597 G T P2RY10 Missense_Mutation p.A194S 0.09 tolerated(0.67) benign(0.004) TCGA-CR-7388-01 X 82763401 82763401 G A POU3F4 Silent p.A23A 0.12 TCGA-CR-7388-01 X 84362472 84362472 C T SATL1 Silent p.L501L 0.10 TCGA-CR-7388-01 X 91134149 91134149 C A PCDH11X Missense_Mutation p.N970K 0.24 deleterious(0) probably_damaging(1) TCGA-CR-7389-01 10 124459210 124459210 T C C10orf120 Missense_Mutation p.I33V 0.20 tolerated(0.56) benign(0.006) TCGA-CR-7389-01 10 15647748 15647748 G T ITGA8 Missense_Mutation p.P649T 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7389-01 10 20568717 20568717 A G PLXDC2 Missense_Mutation p.K520R 0.06 tolerated(0.06) possibly_damaging(0.614) TCGA-CR-7389-01 10 69407256 69407256 G A CTNNA3 Missense_Mutation p.P6S 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.641) TCGA-CR-7389-01 10 75289616 75289616 A G USP54 Missense_Mutation p.F628L 0.04 tolerated(0.59) benign(0.005) TCGA-CR-7389-01 10 91098946 91098946 T C IFIT3 Silent p.I178I 0.14 TCGA-CR-7389-01 10 97174256 97174256 T A SORBS1 Missense_Mutation p.S269C 0.15 deleterious_low_confidence(0.02) probably_damaging(0.91) TCGA-CR-7389-01 11 108348424 108348424 T C KDELC2 Silent p.E436E 0.19 TCGA-CR-7389-01 11 111739396 111739396 G A ALG9 5'UTR 0.14 TCGA-CR-7389-01 11 111753218 111753218 A G C11orf1 Missense_Mutation p.T58A 0.13 tolerated(0.06) possibly_damaging(0.578) TCGA-CR-7389-01 11 123597309 123597309 T A ZNF202 Missense_Mutation p.K448M 0.18 tolerated(0.05) possibly_damaging(0.855) TCGA-CR-7389-01 11 130131282 130131282 C A ZBTB44 Missense_Mutation p.V163L 0.16 tolerated(0.24) probably_damaging(0.997) TCGA-CR-7389-01 11 46842818 46842818 T C CKAP5 Intron 0.29 TCGA-CR-7389-01 11 56057819 56057819 A G OR8H1 Silent p.C240C 0.15 TCGA-CR-7389-01 11 56258800 56258800 A T OR5M8 Missense_Mutation p.L16Q 0.17 deleterious(0) probably_damaging(0.993) TCGA-CR-7389-01 11 59361545 59361545 G T OSBP Missense_Mutation p.L499I 0.12 deleterious(0) probably_damaging(0.999) TCGA-CR-7389-01 11 62521078 62521078 T A ZBTB3 Missense_Mutation p.Q70L 0.24 deleterious(0) benign(0.349) TCGA-CR-7389-01 11 62911082 62911082 T C SLC22A24 Missense_Mutation p.D57G 0.21 tolerated(0.14) benign(0.007) TCGA-CR-7389-01 12 111078916 111078916 G C TCTN1 Missense_Mutation p.V356L 0.22 tolerated(1) benign(0.005) TCGA-CR-7389-01 12 124099831 124099831 T A DDX55 Missense_Mutation p.N308K 0.14 tolerated(0.33) benign(0.349) TCGA-CR-7389-01 12 129559121 129559121 C T TMEM132D Missense_Mutation p.G867S 0.10 tolerated(0.29) benign(0.049) TCGA-CR-7389-01 12 131593399 131593399 G A GPR133 Missense_Mutation p.R673H 0.17 tolerated(0.56) benign(0.009) TCGA-CR-7389-01 12 13526327 13526327 C T C12orf36 Silent p.A76A 0.18 TCGA-CR-7389-01 12 15733638 15733638 A G PTPRO Missense_Mutation p.N1002S 0.24 tolerated(0.2) benign(0.012) TCGA-CR-7389-01 12 464365 464365 T C KDM5A Missense_Mutation p.M277V 0.22 tolerated(0.35) benign(0.01) TCGA-CR-7389-01 12 48367278 48367278 C T COL2A1 Missense_Mutation p.R1459H 0.28 unknown(0) TCGA-CR-7389-01 12 49440414 49440415 - G KMT2D Frame_Shift_Ins p.K1466Qfs*25 0.14 TCGA-CR-7389-01 12 50036081 50036081 C T PRPF40B Missense_Mutation p.R650C 0.09 deleterious(0) probably_damaging(0.992) TCGA-CR-7389-01 12 54063126 54063126 C T ATP5G2 Splice_Site p.X97_splice 0.12 TCGA-CR-7389-01 12 97073479 97073479 T A C12orf55 Missense_Mutation p.S1889T 0.29 tolerated(0.17) benign(0.009) TCGA-CR-7389-01 13 29287503 29287503 G A SLC46A3 Missense_Mutation p.A125V 0.19 deleterious(0.03) benign(0.231) TCGA-CR-7389-01 13 35770345 35770345 G A NBEA Missense_Mutation p.A1758T 0.21 tolerated_low_confidence(0.62) benign(0.002) TCGA-CR-7389-01 13 41133857 41133857 C T FOXO1 Missense_Mutation p.G591S 0.23 tolerated(0.33) probably_damaging(0.998) TCGA-CR-7389-01 13 73337680 73337680 T G DIS3 Missense_Mutation p.H679P 0.16 deleterious(0.02) benign(0.317) TCGA-CR-7389-01 13 73636125 73636137 TTACCTTACAGTA - KLF5 Frame_Shift_Del p.L130Sfs*3 0.16 TCGA-CR-7389-01 14 105517549 105517549 C T GPR132 Missense_Mutation p.V309M 0.49 tolerated(0.06) possibly_damaging(0.593) TCGA-CR-7389-01 14 20845894 20845894 A T TEP1 Missense_Mutation p.S1914T 0.18 tolerated(0.29) benign(0.285) TCGA-CR-7389-01 14 60582438 60582438 A G PCNXL4 Silent p.V219V 0.38 TCGA-CR-7389-01 14 95033317 95033317 G A SERPINA4 Silent p.E220E 0.11 TCGA-CR-7389-01 15 42701996 42701996 C T CAPN3 Silent p.I668I 0.20 TCGA-CR-7389-01 15 54305623 54305623 G - UNC13C Frame_Shift_Del p.G175Afs*2 0.24 TCGA-CR-7389-01 15 65759441 65759441 G A DPP8 Missense_Mutation p.R569C 0.10 tolerated(0.07) probably_damaging(0.97) TCGA-CR-7389-01 15 78474320 78474320 G A ACSBG1 Silent p.D354D 0.39 TCGA-CR-7389-01 16 72110789 72110789 T C HPR Missense_Mutation p.S286P 0.07 tolerated(0.28) probably_damaging(0.953) TCGA-CR-7389-01 17 11607668 11607668 A G DNAH9 Missense_Mutation p.Q1767R 0.05 benign(0.002) TCGA-CR-7389-01 17 26731995 26731995 G A SLC46A1 Silent p.T240T 0.04 TCGA-CR-7389-01 18 13826399 13826399 C T MC5R Missense_Mutation p.A212V 0.07 deleterious(0) probably_damaging(0.999) TCGA-CR-7389-01 18 50278466 50278466 A C DCC Missense_Mutation p.E45A 0.08 deleterious(0) possibly_damaging(0.786) TCGA-CR-7389-01 18 59928749 59928749 A G KIAA1468 Silent p.G736G 0.15 TCGA-CR-7389-01 19 38912750 38912750 G A RASGRP4 Missense_Mutation p.R23W 0.39 deleterious(0) possibly_damaging(0.816) TCGA-CR-7389-01 19 42873017 42873017 G A MEGF8 Silent p.G2101G 0.36 TCGA-CR-7389-01 19 44739552 44739552 T C ZNF227 Silent p.S323S 0.08 TCGA-CR-7389-01 19 47673077 47673077 G C SAE1 Missense_Mutation p.K210N 0.26 tolerated(0.23) benign(0.04) TCGA-CR-7389-01 19 52403436 52403436 G A ZNF649 5'UTR 0.14 TCGA-CR-7389-01 19 58234695 58234695 A G ZNF671 Missense_Mutation p.F51S 0.19 tolerated(0.1) benign(0.095) TCGA-CR-7389-01 19 9070169 9070169 A G MUC16 Silent p.S5759S 0.10 TCGA-CR-7389-01 1 113636139 113636139 A T LRIG2 Silent p.I156I 0.18 TCGA-CR-7389-01 1 152282261 152282261 G T FLG Missense_Mutation p.Q1701K 0.03 benign(0.149) TCGA-CR-7389-01 1 155288149 155288149 C T FDPS Intron 0.11 TCGA-CR-7389-01 1 158639216 158639216 T C SPTA1 Silent p.A605A 0.05 TCGA-CR-7389-01 1 159175972 159175972 C A DARC Missense_Mutation p.A250D 0.10 deleterious(0) possibly_damaging(0.533) TCGA-CR-7389-01 1 215777531 215777531 T G KCTD3 Missense_Mutation p.V399G 0.07 deleterious(0) probably_damaging(0.998) TCGA-CR-7389-01 1 21880541 21880541 G A ALPL 5'UTR 0.12 TCGA-CR-7389-01 1 237993897 237993897 A G RYR2 Missense_Mutation p.H4908R 0.09 possibly_damaging(0.507) TCGA-CR-7389-01 1 27721213 27721213 T C GPR3 Missense_Mutation p.V304A 0.06 deleterious(0) benign(0.028) TCGA-CR-7389-01 1 45293249 45293249 C G PTCH2 Missense_Mutation p.R732S 0.12 tolerated(0.06) benign(0.044) TCGA-CR-7389-01 1 60377930 60377930 T C CYP2J2 Missense_Mutation p.T143A 0.08 tolerated(0.19) benign(0.02) TCGA-CR-7389-01 1 85040121 85040121 A T CTBS 5'UTR 0.50 TCGA-CR-7389-01 1 9009363 9009363 G A CA6 Missense_Mutation p.A41T 0.28 tolerated(0.55) benign(0.021) TCGA-CR-7389-01 20 7886819 7886819 C T HAO1 Missense_Mutation p.A235T 0.25 tolerated(0.05) benign(0.391) TCGA-CR-7389-01 21 46048037 46048037 A C KRTAP10-9 3'UTR 0.35 TCGA-CR-7389-01 22 40066099 40066099 C A CACNA1I Silent p.I1417I 0.05 TCGA-CR-7389-01 22 45728337 45728337 C G FAM118A Missense_Mutation p.S228C 0.06 deleterious(0) probably_damaging(0.971) TCGA-CR-7389-01 22 50470327 50470327 C T TTLL8 Missense_Mutation p.E515K 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-CR-7389-01 2 133403103 133403103 A T GPR39 Missense_Mutation p.E429V 0.19 tolerated_low_confidence(0.06) benign(0.242) TCGA-CR-7389-01 2 179404536 179404536 T C TTN Silent p.A32752A 0.05 TCGA-CR-7389-01 2 228552279 228552279 T C SLC19A3 Missense_Mutation p.Y442C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CR-7389-01 2 242793393 242793393 G A PDCD1 Silent p.F228F 0.21 TCGA-CR-7389-01 2 74688529 74688529 C T MOGS Nonsense_Mutation p.W796* 0.10 TCGA-CR-7389-01 2 97369275 97369275 A G LMAN2L 3'Flank 0.24 TCGA-CR-7389-01 3 100489651 100489651 G A ABI3BP Silent p.T848T 0.11 TCGA-CR-7389-01 3 114014456 114014456 C - TIGIT Frame_Shift_Del p.L43Yfs*12 0.23 TCGA-CR-7389-01 3 164758751 164758751 T G SI Silent p.T712T 0.05 TCGA-CR-7389-01 3 35732405 35732405 T A ARPP21 Silent p.L198L 0.12 TCGA-CR-7389-01 3 38936227 38936227 T C SCN11A Missense_Mutation p.K878E 0.14 tolerated(0.4) benign(0.124) TCGA-CR-7389-01 3 78700882 78700882 C T ROBO1 Missense_Mutation p.V938I 0.26 deleterious(0.01) possibly_damaging(0.785) TCGA-CR-7389-01 4 148800393 148800393 G A ARHGAP10 Silent p.P281P 0.12 TCGA-CR-7389-01 4 156136041 156136041 C T NPY2R Missense_Mutation p.S317F 0.37 deleterious(0) probably_damaging(0.994) TCGA-CR-7389-01 4 48523117 48523117 T C FRYL Missense_Mutation p.E2546G 0.08 tolerated_low_confidence(0.22) benign(0.119) TCGA-CR-7389-01 4 66270095 66270095 C T EPHA5 Missense_Mutation p.G596E 0.13 tolerated(1) probably_damaging(0.997) TCGA-CR-7389-01 4 72215646 72215646 A - SLC4A4 Frame_Shift_Del p.V138Wfs*24 0.10 TCGA-CR-7389-01 4 995285 995285 T C IDUA Missense_Mutation p.W175R 0.20 deleterious(0) probably_damaging(1) TCGA-CR-7389-01 5 13841092 13841092 G A DNAH5 Silent p.L1878L 0.07 TCGA-CR-7389-01 5 140208448 140208448 G A PCDHA6 Missense_Mutation p.G258R 0.16 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-CR-7389-01 5 140957813 140957813 T A DIAPH1 Missense_Mutation p.D381V 0.18 unknown(0) TCGA-CR-7389-01 5 148679114 148679114 T A AFAP1L1 Missense_Mutation p.L20H 0.18 deleterious(0) probably_damaging(0.997) TCGA-CR-7389-01 5 150275862 150275862 A G ZNF300 Silent p.V329V 0.10 TCGA-CR-7389-01 5 161112904 161112904 G C GABRA6 5'UTR 0.33 TCGA-CR-7389-01 5 41159295 41159295 T C C6 Missense_Mutation p.K582R 0.54 tolerated(0.26) benign(0.094) TCGA-CR-7389-01 5 71493969 71493969 A G MAP1B Missense_Mutation p.Q1596R 0.13 probably_damaging(0.985) TCGA-CR-7389-01 5 78752757 78752757 A G HOMER1 Silent p.H30H 0.08 TCGA-CR-7389-01 6 117127648 117127648 G T GPRC6A Missense_Mutation p.A407D 0.12 deleterious(0.02) benign(0.195) TCGA-CR-7389-01 6 143093537 143093537 G A HIVEP2 Missense_Mutation p.A780V 0.17 tolerated(0.6) benign(0.03) TCGA-CR-7389-01 6 151121855 151121855 G A PLEKHG1 Silent p.R210R 0.08 TCGA-CR-7389-01 6 168430194 168430194 C A KIF25 5'UTR 0.35 TCGA-CR-7389-01 6 28554347 28554347 G A SCAND3 Missense_Mutation p.L50F 0.38 tolerated_low_confidence(0.16) benign(0.009) TCGA-CR-7389-01 6 44247948 44247948 A T TCTE1 Silent p.T492T 0.16 TCGA-CR-7389-01 6 82950154 82950154 T C IBTK Missense_Mutation p.H17R 0.09 deleterious(0) probably_damaging(1) TCGA-CR-7389-01 7 101844978 101844978 G A CUX1 Missense_Mutation p.D812N 0.44 tolerated(0.16) unknown(0) TCGA-CR-7389-01 7 57188428 57188428 T A ZNF479 Nonsense_Mutation p.K232* 0.17 TCGA-CR-7389-01 7 6204507 6204507 G A CYTH3 3'UTR 0.06 TCGA-CR-7389-01 7 6213353 6213353 T C CYTH3 Missense_Mutation p.N127S 0.42 deleterious(0.02) probably_damaging(0.943) TCGA-CR-7389-01 7 73535347 73535347 C T LIMK1 Silent p.T583T 0.19 TCGA-CR-7389-01 7 80091818 80091818 C T GNAT3 Silent p.V240V 0.12 TCGA-CR-7389-01 8 105361565 105361565 A T DCSTAMP Missense_Mutation p.Q262L 0.13 deleterious(0.01) possibly_damaging(0.67) TCGA-CR-7389-01 8 110455268 110455268 T C PKHD1L1 Missense_Mutation p.I1496T 0.14 deleterious(0) benign(0.013) TCGA-CR-7389-01 8 131880107 131880107 A G ADCY8 Missense_Mutation p.L732S 0.10 deleterious(0) benign(0.444) TCGA-CR-7389-01 8 37699033 37699033 C T GPR124 Silent p.S1059S 0.13 TCGA-CR-7389-01 8 92972688 92972688 G A RUNX1T1 Nonsense_Mutation p.R544* 0.38 TCGA-CR-7389-01 9 112899866 112899866 A T PALM2-AKAP2 Missense_Mutation p.D681V 0.48 deleterious(0) probably_damaging(0.962) TCGA-CR-7389-01 9 117797538 117797539 - G TNC Frame_Shift_Ins p.R1911Pfs*12 0.42 TCGA-CR-7389-01 9 43627396 43627396 C T SPATA31A6 Missense_Mutation p.A431T 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-CR-7389-01 9 94486931 94486931 G A ROR2 Silent p.D615D 0.13 TCGA-CR-7389-01 9 95179448 95179448 C G OMD Missense_Mutation p.K131N 0.06 tolerated(0.11) benign(0.076) TCGA-CR-7389-01 X 92927421 92927421 G T NAP1L3 Missense_Mutation p.L295I 0.63 tolerated(0.1) benign(0.037) TCGA-CR-7390-01 10 117221532 117221532 C A ATRNL1 Missense_Mutation p.A1135E 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7390-01 10 16918966 16918966 C T CUBN Silent p.P3012P 0.29 TCGA-CR-7390-01 10 61012750 61012750 T A FAM13C Missense_Mutation p.E447D 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CR-7390-01 10 6148125 6148125 A G RBM17 Silent p.E143E 0.20 TCGA-CR-7390-01 10 70044029 70044029 G C PBLD Missense_Mutation p.R258G 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7390-01 10 75407451 75407451 T C SYNPO2L Silent p.L653L 0.16 TCGA-CR-7390-01 10 8007660 8007660 G A TAF3 Silent p.E729E 0.12 TCGA-CR-7390-01 10 81058853 81058853 C T ZMIZ1 Silent p.G571G 0.09 TCGA-CR-7390-01 10 93668075 93668075 C A FGFBP3 Nonsense_Mutation p.E218* 0.17 TCGA-CR-7390-01 10 97917279 97917279 A T ZNF518A RNA 0.28 TCGA-CR-7390-01 11 100169983 100169983 G T CNTN5 Missense_Mutation p.M825I 0.18 tolerated(0.09) probably_damaging(0.996) TCGA-CR-7390-01 11 117266774 117266780 CTGGAGG - CEP164 Frame_Shift_Del p.E1033Kfs*9 0.18 TCGA-CR-7390-01 11 131781321 131781322 - G NTM 5'Flank 0.17 TCGA-CR-7390-01 11 17428228 17428228 C T ABCC8 Silent p.L1090L 0.16 TCGA-CR-7390-01 11 22397578 22397578 A G SLC17A6 Missense_Mutation p.R409G 0.16 deleterious(0.05) benign(0.003) TCGA-CR-7390-01 11 47753052 47753052 C G FNBP4 Missense_Mutation p.D628H 0.15 deleterious(0) probably_damaging(0.962) TCGA-CR-7390-01 11 5020608 5020608 G A OR51L1 Silent p.L132L 0.17 TCGA-CR-7390-01 11 6024283 6024283 G A OR56A4 Silent p.F32F 0.19 TCGA-CR-7390-01 11 65294570 65294570 C T SCYL1 Silent p.L277L 0.09 TCGA-CR-7390-01 11 66192179 66192179 C T NPAS4 Silent p.P606P 0.34 TCGA-CR-7390-01 11 8008701 8008701 G A EIF3F 5'UTR 0.21 TCGA-CR-7390-01 11 9838470 9838470 A G SBF2 Missense_Mutation p.F1299L 0.25 tolerated(0.66) benign(0.001) TCGA-CR-7390-01 12 1023104 1023104 C A RAD52 Missense_Mutation p.G384V 0.31 tolerated(0.06) benign(0.049) TCGA-CR-7390-01 12 103352724 103352724 C G ASCL1 Missense_Mutation p.N234K 0.16 deleterious(0.01) benign(0.065) TCGA-CR-7390-01 12 108686177 108686177 G A CMKLR1 Missense_Mutation p.S188F 0.13 tolerated(0.71) benign(0.063) TCGA-CR-7390-01 12 3387622 3387622 G A TSPAN9 Nonsense_Mutation p.W33* 0.24 TCGA-CR-7390-01 12 53839874 53839874 C T PRR13 3'UTR 0.18 TCGA-CR-7390-01 12 53876495 53876495 G T MAP3K12 Missense_Mutation p.P698T 0.22 tolerated_low_confidence(0.27) benign(0) TCGA-CR-7390-01 12 55794454 55794454 T A OR6C65 Missense_Mutation p.L48M 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.495) TCGA-CR-7390-01 13 25483949 25483949 C T CENPJ Missense_Mutation p.E282K 0.18 tolerated(0.08) benign(0.014) TCGA-CR-7390-01 13 70370888 70370888 T C KLHL1 Missense_Mutation p.T541A 0.09 deleterious(0) possibly_damaging(0.87) TCGA-CR-7390-01 14 23021075 23021075 C T AE000662.92 5'Flank 0.16 TCGA-CR-7390-01 14 23608670 23608670 G A SLC7A8 Missense_Mutation p.S292F 0.13 deleterious(0) probably_damaging(0.999) TCGA-CR-7390-01 14 23902836 23902836 C T MYH7 Missense_Mutation p.D36N 0.14 tolerated(0.27) benign(0.007) TCGA-CR-7390-01 14 24030798 24030798 G A AP1G2 Nonsense_Mutation p.Q594* 0.18 TCGA-CR-7390-01 14 32561108 32561108 A G ARHGAP5 Silent p.E411E 0.34 TCGA-CR-7390-01 14 42356819 42356819 G T LRFN5 Missense_Mutation p.A331S 0.12 tolerated(1) benign(0.003) TCGA-CR-7390-01 14 70515481 70515481 C T SLC8A3 Intron 0.15 TCGA-CR-7390-01 14 75746698 75746698 C G FOS Missense_Mutation p.P87R 0.13 deleterious(0.01) probably_damaging(0.98) TCGA-CR-7390-01 14 91701408 91701408 G A GPR68 5'UTR 0.07 TCGA-CR-7390-01 15 43762178 43762178 C T TP53BP1 Missense_Mutation p.E423K 0.13 tolerated(0.23) possibly_damaging(0.885) TCGA-CR-7390-01 15 50534531 50534531 C T HDC Missense_Mutation p.V639I 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CR-7390-01 15 68623327 68623327 C T ITGA11 Silent p.V631V 0.19 TCGA-CR-7390-01 15 73925476 73925476 G C NPTN Silent p.A27A 0.42 TCGA-CR-7390-01 15 74426446 74426446 G A ISLR2 Missense_Mutation p.A451T 0.24 tolerated(0.53) benign(0.001) TCGA-CR-7390-01 16 18806883 18806883 C G ARL6IP1 Missense_Mutation p.R104T 0.11 deleterious(0.01) benign(0.074) TCGA-CR-7390-01 16 30364884 30364884 A C CD2BP2 Missense_Mutation p.L205V 0.30 deleterious(0) probably_damaging(0.983) TCGA-CR-7390-01 16 3454902 3454902 G A ZNF174 Intron 0.17 TCGA-CR-7390-01 16 47196540 47196540 G A ITFG1 Nonsense_Mutation p.Q497* 0.19 TCGA-CR-7390-01 16 86600960 86600960 G A FOXC2 Missense_Mutation p.V7M 0.22 deleterious(0) probably_damaging(0.945) TCGA-CR-7390-01 16 89348862 89348862 C T ANKRD11 Missense_Mutation p.R1363Q 0.15 possibly_damaging(0.796) TCGA-CR-7390-01 16 89351117 89351117 G A ANKRD11 Silent p.F611F 0.16 TCGA-CR-7390-01 17 10352202 10352202 C T MYH4 Silent p.K1448K 0.07 TCGA-CR-7390-01 17 32964569 32964569 C T TMEM132E Missense_Mutation p.A758V 0.19 tolerated(0.27) benign(0.012) TCGA-CR-7390-01 17 39580043 39580043 C T KRT37 Silent p.A182A 0.16 TCGA-CR-7390-01 17 39742774 39742785 CAAAGCCACCAC - KRT14 In_Frame_Del p.G101_F104del 0.12 TCGA-CR-7390-01 17 40175777 40175777 G T NKIRAS2 Nonsense_Mutation p.E148* 0.16 TCGA-CR-7390-01 17 45745744 45745744 G C KPNB1 Missense_Mutation p.E398Q 0.11 deleterious(0.03) benign(0.003) TCGA-CR-7390-01 17 56355308 56355308 G A MPO Silent p.L362L 0.16 TCGA-CR-7390-01 17 72588200 72588200 G A C17orf77 Silent p.A5A 0.12 TCGA-CR-7390-01 17 73235980 73235980 G A GGA3 Silent p.A491A 0.13 TCGA-CR-7390-01 17 73702628 73702628 A G SAP30BP 3'UTR 0.13 TCGA-CR-7390-01 17 7579369 7579369 G C TP53 Missense_Mutation p.S106R 0.61 tolerated(0.41) benign(0.27) TCGA-CR-7390-01 17 76045219 76045219 G A TNRC6C Missense_Mutation p.A26T 0.14 tolerated(0.26) benign(0.016) TCGA-CR-7390-01 18 21330996 21330996 A C LAMA3 Missense_Mutation p.T267P 0.12 probably_damaging(0.995) TCGA-CR-7390-01 19 11348922 11348922 G C DOCK6 Missense_Mutation p.R568G 0.21 deleterious(0) probably_damaging(0.997) TCGA-CR-7390-01 19 21992242 21992242 C A ZNF43 Silent p.V199V 0.18 TCGA-CR-7390-01 19 30936342 30936342 A G ZNF536 Missense_Mutation p.N625D 0.16 tolerated(0.65) benign(0.063) TCGA-CR-7390-01 19 38600875 38600875 G A SIPA1L3 Silent p.R714R 0.12 TCGA-CR-7390-01 19 50098071 50098071 G A PRR12 Missense_Mutation p.R160H 0.32 possibly_damaging(0.715) TCGA-CR-7390-01 19 51362889 51362889 G T KLK3 Intron 0.31 TCGA-CR-7390-01 19 56490773 56490773 C T NLRP8 Silent p.L964L 0.36 TCGA-CR-7390-01 19 56953462 56953462 C A ZNF667 Missense_Mutation p.R301I 0.20 deleterious(0) benign(0.015) TCGA-CR-7390-01 19 56953707 56953707 C G ZNF667 Missense_Mutation p.M219I 0.27 deleterious(0.02) benign(0) TCGA-CR-7390-01 1 103488537 103488537 C G COL11A1 Missense_Mutation p.E336Q 0.21 probably_damaging(0.946) TCGA-CR-7390-01 1 110882111 110882111 G A RBM15 Silent p.G28G 0.21 TCGA-CR-7390-01 1 150923394 150923394 G A SETDB1 Missense_Mutation p.D681N 0.14 deleterious(0.01) probably_damaging(1) TCGA-CR-7390-01 1 154229858 154229858 C T UBAP2L Missense_Mutation p.P797L 0.16 deleterious(0) unknown(0) TCGA-CR-7390-01 1 157773648 157773648 C T FCRL1 Silent p.Q102Q 0.17 TCGA-CR-7390-01 1 176679116 176679116 C T PAPPA2 Intron 0.12 TCGA-CR-7390-01 1 179077340 179077340 C T ABL2 Missense_Mutation p.G1021E 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.772) TCGA-CR-7390-01 1 181021478 181021478 A - MR1 Frame_Shift_Del p.N239Tfs*63 0.11 TCGA-CR-7390-01 1 185902690 185902690 C T HMCN1 Missense_Mutation p.P521L 0.30 probably_damaging(0.998) TCGA-CR-7390-01 1 202984173 202984173 G A TMEM183A Missense_Mutation p.R175Q 0.14 deleterious(0.01) benign(0.025) TCGA-CR-7390-01 1 216497666 216497666 C G USH2A Missense_Mutation p.S391T 0.14 probably_damaging(0.992) TCGA-CR-7390-01 1 248525032 248525032 C G OR2T4 Missense_Mutation p.F50L 0.10 tolerated(0.13) benign(0.076) TCGA-CR-7390-01 1 3319474 3319474 G A PRDM16 Missense_Mutation p.E266K 0.20 tolerated(0.07) benign(0.14) TCGA-CR-7390-01 1 45923296 45923296 C T TESK2 Silent p.T54T 0.17 TCGA-CR-7390-01 1 52703916 52703916 A T ZFYVE9 Missense_Mutation p.D276V 0.17 deleterious_low_confidence(0.02) benign(0.003) TCGA-CR-7390-01 1 57480841 57480841 G - DAB1 Frame_Shift_Del p.A388Pfs*80 0.28 TCGA-CR-7390-01 1 63005304 63005304 T C DOCK7 Missense_Mutation p.N1040S 0.18 deleterious(0.03) possibly_damaging(0.891) TCGA-CR-7390-01 1 76257189 76257189 T C RABGGTB Missense_Mutation p.V171A 0.22 deleterious(0) probably_damaging(0.932) TCGA-CR-7390-01 1 78395180 78395180 G C NEXN Missense_Mutation p.R348S 0.18 deleterious(0.01) benign(0.184) TCGA-CR-7390-01 1 7848168 7848168 G T PER3 Missense_Mutation p.A152S 0.19 tolerated(0.36) possibly_damaging(0.739) TCGA-CR-7390-01 20 2640753 2640753 G A IDH3B Silent p.L280L 0.16 TCGA-CR-7390-01 20 31604856 31604856 G C BPIFB2 Silent p.L175L 0.18 TCGA-CR-7390-01 20 3214600 3214600 C T SLC4A11 Missense_Mutation p.G234E 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7390-01 21 14982834 14982834 G C POTED Missense_Mutation p.R95S 0.28 tolerated_low_confidence(0.09) possibly_damaging(0.622) TCGA-CR-7390-01 21 34923284 34923284 G C SON Missense_Mutation p.E583Q 0.18 benign(0.403) TCGA-CR-7390-01 22 17308543 17308543 G A HSFY1P1 RNA 0.19 TCGA-CR-7390-01 22 24567922 24567922 A G CABIN1 Missense_Mutation p.H2000R 0.15 tolerated_low_confidence(0.72) benign(0.021) TCGA-CR-7390-01 22 25120933 25120933 C G PIWIL3 Missense_Mutation p.G727R 0.24 deleterious(0) probably_damaging(1) TCGA-CR-7390-01 22 32352249 32352249 A G YWHAH Missense_Mutation p.M71V 0.14 deleterious_low_confidence(0.03) benign(0.005) TCGA-CR-7390-01 22 50752289 50752289 G A DENND6B Missense_Mutation p.T386M 0.32 deleterious(0) benign(0.302) TCGA-CR-7390-01 2 101885962 101885962 T A CNOT11 3'UTR 0.50 TCGA-CR-7390-01 2 119600538 119600538 G T EN1 Silent p.V385V 0.15 TCGA-CR-7390-01 2 160673380 160673380 G C LY75-CD302 Silent p.L1439L 0.13 TCGA-CR-7390-01 2 166621528 166621528 G A GALNT3 Missense_Mutation p.P185L 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7390-01 2 179539081 179539081 T G TTN Silent p.P11556P 0.38 TCGA-CR-7390-01 2 222298932 222298932 C T EPHA4 Missense_Mutation p.S809N 0.37 deleterious(0.02) possibly_damaging(0.718) TCGA-CR-7390-01 2 24432884 24432884 G C ITSN2 Missense_Mutation p.L1426V 0.23 tolerated(0.54) unknown(0) TCGA-CR-7390-01 2 24929454 24929454 C G NCOA1 Missense_Mutation p.S372C 0.36 tolerated(0.05) benign(0.051) TCGA-CR-7390-01 2 29606696 29606696 C T ALK Missense_Mutation p.R395H 0.09 tolerated(0.25) benign(0.014) TCGA-CR-7390-01 2 74687380 74687380 G C WBP1 Missense_Mutation p.E128Q 0.23 deleterious(0) probably_damaging(1) TCGA-CR-7390-01 2 97377727 97377727 G A LMAN2L Silent p.N192N 0.12 TCGA-CR-7390-01 3 113098399 113098399 C G WDR52 Splice_Site p.X685_splice 0.10 TCGA-CR-7390-01 3 119133482 119133482 G A ARHGAP31 Silent p.L902L 0.19 TCGA-CR-7390-01 3 125828902 125828902 G A ALDH1L1 Silent p.T754T 0.09 TCGA-CR-7390-01 3 147114162 147114162 G C ZIC4 Silent p.P105P 0.17 TCGA-CR-7390-01 3 165547586 165547586 G A BCHE Silent p.N412N 0.67 TCGA-CR-7390-01 3 169569457 169569457 G A LRRC31 Missense_Mutation p.S370L 0.10 deleterious(0.01) benign(0.341) TCGA-CR-7390-01 3 176743176 176743176 G A TBL1XR1 3'UTR 0.61 TCGA-CR-7390-01 3 182575744 182575745 - T ATP11B Frame_Shift_Ins p.W311Lfs*4 0.13 TCGA-CR-7390-01 3 9944734 9944734 C G IL17RE Missense_Mutation p.L40V 0.22 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-CR-7390-01 4 114824711 114824711 C T ARSJ Missense_Mutation p.M173I 0.16 tolerated(0.06) possibly_damaging(0.837) TCGA-CR-7390-01 4 166794938 166794938 C T TLL1 5'UTR 0.53 TCGA-CR-7390-01 4 187517874 187517874 C A FAT1 Nonsense_Mutation p.E4274* 0.59 TCGA-CR-7390-01 4 25258233 25258233 G A PI4K2B Silent p.K231K 0.12 TCGA-CR-7390-01 4 25278857 25278857 T A PI4K2B 3'UTR 0.21 TCGA-CR-7390-01 4 71840892 71840892 G T MOB1B Nonsense_Mutation p.G105* 0.10 TCGA-CR-7390-01 4 84376476 84376476 A G HELQ Intron 0.22 TCGA-CR-7390-01 4 84383771 84383771 G T FAM175A Silent p.R361R 0.21 TCGA-CR-7390-01 5 1232407 1232407 C T SLC6A18 Silent p.I78I 0.09 TCGA-CR-7390-01 5 138715667 138715668 - T SLC23A1 Frame_Shift_Ins p.I253Nfs*47 0.20 TCGA-CR-7390-01 5 139865277 139865277 A T ANKHD1 Missense_Mutation p.D701V 0.20 unknown(0) TCGA-CR-7390-01 5 140793166 140793166 C G PCDHGA10 Missense_Mutation p.L142V 0.28 tolerated_low_confidence(0.28) benign(0.039) TCGA-CR-7390-01 5 156816398 156816398 T A CYFIP2 Missense_Mutation p.Y1111N 0.32 deleterious(0) possibly_damaging(0.905) TCGA-CR-7390-01 5 156932713 156932713 G A ADAM19 Missense_Mutation p.A365V 0.08 tolerated(0.07) possibly_damaging(0.899) TCGA-CR-7390-01 5 33937333 33937333 C T RXFP3 Missense_Mutation p.S163F 0.20 deleterious(0.01) benign(0.063) TCGA-CR-7390-01 5 36153055 36153056 - C SKP2 Frame_Shift_Ins p.R67Tfs*10 0.12 TCGA-CR-7390-01 5 52376453 52376453 T C ITGA2 Splice_Site p.X1013_splice 0.29 TCGA-CR-7390-01 5 65054536 65054536 G C NLN Missense_Mutation p.E62Q 0.28 tolerated(0.26) benign(0.006) TCGA-CR-7390-01 5 79616524 79616524 C G SPZ1 Missense_Mutation p.L164V 0.15 tolerated(0.23) unknown(0) TCGA-CR-7390-01 6 10557455 10557455 C T GCNT2 Intron 0.21 TCGA-CR-7390-01 6 108533400 108533400 C T SNX3 Missense_Mutation p.E148K 0.14 tolerated(0.13) benign(0.042) TCGA-CR-7390-01 6 109796641 109796641 C A ZBTB24 Missense_Mutation p.D417Y 0.17 tolerated(0.07) probably_damaging(0.927) TCGA-CR-7390-01 6 24570136 24570136 G A KIAA0319 Silent p.H662H 0.31 TCGA-CR-7390-01 6 26056012 26056012 C T HIST1H1C 3'UTR 0.24 TCGA-CR-7390-01 6 31778361 31778361 C G HSPA1L Silent p.L463L 0.25 TCGA-CR-7390-01 6 35443391 35443391 G A TEAD3 Silent p.V331V 0.24 TCGA-CR-7390-01 6 56426298 56426313 TTCATAACCATGACTT - DST Frame_Shift_Del p.I2078Mfs*11 0.16 TCGA-CR-7390-01 6 84567050 84567050 C G RIPPLY2 Nonsense_Mutation p.S110* 0.24 TCGA-CR-7390-01 6 94066437 94066437 G T EPHA7 Missense_Mutation p.A441E 0.18 deleterious(0.05) benign(0.218) TCGA-CR-7390-01 7 100485056 100485056 G A SRRT Silent p.V697V 0.33 TCGA-CR-7390-01 7 111617324 111617324 A T DOCK4 Missense_Mutation p.H188Q 0.24 tolerated(0.28) benign(0.009) TCGA-CR-7390-01 7 112407527 112407527 C T TMEM168 Missense_Mutation p.E607K 0.12 deleterious(0.04) possibly_damaging(0.647) TCGA-CR-7390-01 7 142000966 142000966 G A TRBV2 5'UTR 0.28 TCGA-CR-7390-01 7 142143663 142143663 G T TRBV6-7 Silent p.A111A 0.31 TCGA-CR-7390-01 7 149557670 149557670 C A ZNF862 Missense_Mutation p.P474Q 0.16 tolerated(0.07) probably_damaging(0.92) TCGA-CR-7390-01 7 20421484 20421484 C T ITGB8 Silent p.N312N 0.09 TCGA-CR-7390-01 7 21550740 21550740 G A SP4 Silent p.G736G 0.09 TCGA-CR-7390-01 7 21639716 21639716 C T DNAH11 Silent p.H993H 0.07 TCGA-CR-7390-01 7 34125518 34125518 A T BMPER Missense_Mutation p.D520V 0.23 tolerated(0.15) possibly_damaging(0.635) TCGA-CR-7390-01 7 34889381 34889381 C A NPSR1 Intron 0.38 TCGA-CR-7390-01 7 38530746 38530746 C G AMPH Splice_Site p.X101_splice 0.10 TCGA-CR-7390-01 7 5983552 5983552 G T RSPH10B Missense_Mutation p.F533L 0.15 deleterious(0.02) benign(0.011) TCGA-CR-7390-01 7 72988772 72988772 G T TBL2 Silent p.R68R 0.19 TCGA-CR-7390-01 7 73969808 73969808 G A GTF2IRD1 Silent p.K701K 0.17 TCGA-CR-7390-01 7 8791329 8791329 A G NXPH1 Missense_Mutation p.Y249C 0.28 deleterious(0) probably_damaging(1) TCGA-CR-7390-01 7 94056540 94056540 G A COL1A2 Missense_Mutation p.R1067H 0.10 unknown(0) TCGA-CR-7390-01 8 143833896 143833896 C T LYPD2 5'UTR 0.24 TCGA-CR-7390-01 8 145584478 145584478 C G SLC52A2 Missense_Mutation p.L381V 0.19 tolerated(0.08) possibly_damaging(0.474) TCGA-CR-7390-01 8 82752108 82752108 A T SNX16 Missense_Mutation p.N38K 0.36 deleterious(0.04) benign(0.097) TCGA-CR-7390-01 9 104499644 104499644 C G GRIN3A Missense_Mutation p.M206I 0.62 tolerated(0.05) benign(0.01) TCGA-CR-7390-01 9 130712747 130712747 C T FAM102A Silent p.E123E 0.10 TCGA-CR-7390-01 9 13107074 13107074 C T MPDZ Missense_Mutation p.D2006N 0.42 deleterious(0) probably_damaging(1) TCGA-CR-7390-01 9 139402771 139402771 G A NOTCH1 Nonsense_Mutation p.Q1080* 0.53 TCGA-CR-7390-01 9 35741826 35741826 C T GBA2 Missense_Mutation p.R210H 0.18 tolerated(0.08) benign(0.02) TCGA-CR-7390-01 9 37592570 37592570 T C TOMM5 5'UTR 0.19 TCGA-CR-7390-01 9 88650342 88650342 T A GOLM1 Missense_Mutation p.E319V 0.14 deleterious(0) possibly_damaging(0.895) TCGA-CR-7390-01 X 103267270 103267270 T C H2BFWT 3'UTR 0.74 TCGA-CR-7390-01 X 12938009 12938009 C G TLR8 Missense_Mutation p.Q284E 0.40 tolerated(0.26) benign(0.196) TCGA-CR-7390-01 X 1712340 1712340 C T AKAP17A 5'UTR 0.18 TCGA-CR-7390-01 X 18748392 18748392 C G PPEF1 Missense_Mutation p.S47C 0.38 deleterious(0) probably_damaging(0.986) TCGA-CR-7390-01 X 54259359 54259359 G T WNK3 Missense_Mutation p.Q1575K 0.39 tolerated(0.16) benign(0.044) TCGA-CR-7391-01 11 57382046 57382046 A G SERPING1 Missense_Mutation p.R499G 0.08 deleterious(0.02) benign(0.13) TCGA-CR-7391-01 17 29162940 29162940 C G ATAD5 Missense_Mutation p.S614C 0.09 deleterious(0.01) possibly_damaging(0.896) TCGA-CR-7391-01 3 184009925 184009925 C T ECE2 Missense_Mutation p.R851C 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7391-01 8 142483025 142483025 C T MROH5 3'UTR 0.18 TCGA-CR-7391-01 8 144946714 144946714 G A EPPK1 Silent p.R236R 0.17 TCGA-CR-7391-01 8 30701885 30701885 T A TEX15 Missense_Mutation p.D1550V 0.06 deleterious(0.01) benign(0.016) TCGA-CR-7391-01 X 106186359 106186359 G C MORC4 Missense_Mutation p.L588V 0.05 tolerated(0.24) benign(0.056) TCGA-CR-7392-01 11 35640755 35640755 G A FJX1 Missense_Mutation p.E191K 0.19 deleterious(0) probably_damaging(0.98) TCGA-CR-7392-01 11 46564921 46564921 C T AMBRA1 Missense_Mutation p.D216N 0.13 tolerated_low_confidence(0.2) possibly_damaging(0.763) TCGA-CR-7392-01 11 55111250 55111250 T A OR4A16 Missense_Mutation p.F192I 0.04 tolerated_low_confidence(0.46) benign(0.314) TCGA-CR-7392-01 11 65124576 65124576 G A TIGD3 Missense_Mutation p.D433N 0.10 deleterious(0.01) benign(0.426) TCGA-CR-7392-01 11 8959494 8959494 C T ASCL3 Missense_Mutation p.C72Y 0.07 tolerated(0.38) benign(0.014) TCGA-CR-7392-01 12 42854281 42854281 G A PRICKLE1 Missense_Mutation p.P609L 0.04 tolerated(0.13) benign(0.007) TCGA-CR-7392-01 19 40540672 40540672 T A ZNF780B Silent p.V698V 0.07 TCGA-CR-7392-01 1 112303508 112303508 T C DDX20 Intron 0.05 TCGA-CR-7392-01 1 167906205 167906205 T C DCAF6 Missense_Mutation p.L19P 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CR-7392-01 1 244217659 244217659 C T ZBTB18 Nonsense_Mutation p.R195* 0.08 TCGA-CR-7392-01 22 32289633 32289633 C G DEPDC5 Missense_Mutation p.L1358V 0.07 tolerated(0.87) benign(0.012) TCGA-CR-7392-01 2 74783609 74783609 G C DOK1 Missense_Mutation p.G272R 0.04 tolerated(0.08) probably_damaging(0.957) TCGA-CR-7392-01 3 181430843 181430843 C T SOX2 Missense_Mutation p.T232I 0.09 tolerated(0.06) benign(0.024) TCGA-CR-7392-01 4 861163 861163 G C GAK Missense_Mutation p.A818G 0.04 tolerated(0.5) benign(0.002) TCGA-CR-7392-01 5 54456006 54456006 C T GPX8 5'UTR 0.07 TCGA-CR-7392-01 6 160952810 160952810 C A LPA Missense_Mutation p.R2025L 0.07 deleterious(0) benign(0.194) TCGA-CR-7392-01 6 26056369 26056369 C G HIST1H1C Silent p.T96T 0.03 TCGA-CR-7392-01 6 26217599 26217599 G C HIST1H2AE 3'UTR 0.05 TCGA-CR-7392-01 7 1579888 1579888 C T MAFK Silent p.T116T 0.15 TCGA-CR-7392-01 7 94230126 94230126 C T SGCE Missense_Mutation p.R290H 0.20 tolerated(0.54) benign(0.014) TCGA-CR-7392-01 8 59492228 59492228 G A SDCBP Missense_Mutation p.V209I 0.08 tolerated(0.26) benign(0.019) TCGA-CR-7392-01 8 61135309 61135309 G A CA8 Missense_Mutation p.R213W 0.15 deleterious(0.04) benign(0.074) TCGA-CR-7392-01 X 138643694 138643694 A T F9 Missense_Mutation p.I284F 0.12 deleterious(0.04) benign(0.242) TCGA-CR-7392-01 X 152730472 152730472 C A HAUS7 Missense_Mutation p.G99V 0.04 deleterious(0.03) probably_damaging(0.909) TCGA-CR-7394-01 10 104163637 104163637 C T PSD Missense_Mutation p.E936K 0.18 deleterious(0) benign(0.11) TCGA-CR-7394-01 10 1061734 1061734 T C GTPBP4 Silent p.T550T 0.09 TCGA-CR-7394-01 10 11567452 11567452 C T USP6NL Missense_Mutation p.E47K 0.11 tolerated(0.33) benign(0.037) TCGA-CR-7394-01 10 124596554 124596554 C T CUZD1 Missense_Mutation p.D204N 0.33 deleterious(0.03) probably_damaging(1) TCGA-CR-7394-01 10 125426416 125426416 G A GPR26 Missense_Mutation p.E165K 0.20 tolerated(0.32) benign(0.227) TCGA-CR-7394-01 10 129839247 129839247 G A PTPRE Silent p.T34T 0.09 TCGA-CR-7394-01 10 129914118 129914118 G A MKI67 Missense_Mutation p.S185L 0.14 deleterious(0) probably_damaging(0.963) TCGA-CR-7394-01 10 16994286 16994286 G A CUBN Missense_Mutation p.A1653V 0.10 tolerated(0.05) probably_damaging(0.986) TCGA-CR-7394-01 10 22618452 22618452 C T COMMD3-BMI1 Missense_Mutation p.S464L 0.09 deleterious_low_confidence(0) benign(0.096) TCGA-CR-7394-01 10 32329358 32329358 A T KIF5B Missense_Mutation p.I81K 0.10 deleterious(0) probably_damaging(0.999) TCGA-CR-7394-01 10 32329359 32329359 T A KIF5B Missense_Mutation p.I81L 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-CR-7394-01 10 32329361 32329361 G A KIF5B Missense_Mutation p.T80I 0.10 deleterious(0) probably_damaging(1) TCGA-CR-7394-01 10 48387946 48387946 C G RBP3 Missense_Mutation p.E978Q 0.06 tolerated(0.06) benign(0.403) TCGA-CR-7394-01 10 48388901 48388901 C G RBP3 Missense_Mutation p.Q659H 0.10 tolerated(0.08) benign(0.216) TCGA-CR-7394-01 10 48414224 48414224 A G GDF2 Missense_Mutation p.V215A 0.08 tolerated(0.57) benign(0.052) TCGA-CR-7394-01 10 50952758 50952758 T C OGDHL Missense_Mutation p.Y557C 0.12 deleterious(0) probably_damaging(0.943) TCGA-CR-7394-01 10 99148099 99148099 C T RRP12 Silent p.T309T 0.09 TCGA-CR-7394-01 11 110007346 110007346 G A ZC3H12C Intron 0.11 TCGA-CR-7394-01 11 113102481 113102481 G A NCAM1 Missense_Mutation p.G451S 0.08 deleterious(0) probably_damaging(1) TCGA-CR-7394-01 11 120170369 120170369 C A POU2F3 Missense_Mutation p.L101M 0.10 deleterious(0) probably_damaging(0.943) TCGA-CR-7394-01 11 1862066 1862066 G A TNNI2 Silent p.L68L 0.12 TCGA-CR-7394-01 11 33581457 33581457 C T KIAA1549L Missense_Mutation p.P1043S 0.05 tolerated(0.19) possibly_damaging(0.831) TCGA-CR-7394-01 11 45950273 45950273 C G GYLTL1B Silent p.T681T 0.07 TCGA-CR-7394-01 11 47317523 47317523 G A MADD Missense_Mutation p.E1226K 0.12 tolerated(0.5) benign(0.003) TCGA-CR-7394-01 11 4967899 4967899 G A OR51A4 Silent p.A144A 0.15 TCGA-CR-7394-01 11 534289 534289 C T HRAS Missense_Mutation p.G12S 0.11 deleterious(0.02) possibly_damaging(0.525) TCGA-CR-7394-01 11 5344774 5344774 T C OR51B2 Missense_Mutation p.T252A 0.07 deleterious(0) benign(0.107) TCGA-CR-7394-01 11 549952 549952 G T LRRC56 Missense_Mutation p.C126F 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7394-01 11 61079299 61079299 G A DDB1 Missense_Mutation p.T745M 0.07 tolerated(0.13) benign(0.069) TCGA-CR-7394-01 11 62389338 62389338 C T B3GAT3 Missense_Mutation p.G28S 0.07 tolerated(0.18) probably_damaging(0.964) TCGA-CR-7394-01 11 62457987 62457987 C A BSCL2 Missense_Mutation p.G414V 0.07 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CR-7394-01 11 64012227 64012227 C T PPP1R14B Silent p.%3D 0.09 TCGA-CR-7394-01 11 66358522 66358522 C T CCDC87 Nonsense_Mutation p.W655* 0.10 TCGA-CR-7394-01 11 66407347 66407347 G A RBM4 Silent p.L55L 0.10 TCGA-CR-7394-01 11 67050604 67050604 G A ADRBK1 Silent p.V411V 0.10 TCGA-CR-7394-01 11 73681032 73681032 G A DNAJB13 Missense_Mutation p.G275E 0.06 deleterious(0.01) benign(0.349) TCGA-CR-7394-01 12 123351727 123351727 G A VPS37B Missense_Mutation p.P265L 0.09 tolerated(0.06) probably_damaging(0.996) TCGA-CR-7394-01 12 132502171 132502171 G A EP400 Missense_Mutation p.E1339K 0.10 unknown(0) TCGA-CR-7394-01 12 133277837 133277837 G A PXMP2 Missense_Mutation p.G134E 0.08 deleterious(0.01) probably_damaging(0.959) TCGA-CR-7394-01 12 133362956 133362956 C T GOLGA3 Missense_Mutation p.G1031D 0.11 tolerated(0.19) benign(0.098) TCGA-CR-7394-01 12 46245723 46245723 C T ARID2 Nonsense_Mutation p.R1273* 0.08 TCGA-CR-7394-01 12 49580117 49580117 G A TUBA1A Silent p.L117L 0.10 TCGA-CR-7394-01 12 6976707 6976707 C T TPI1 Missense_Mutation p.L30F 0.29 tolerated_low_confidence(0.08) probably_damaging(0.992) TCGA-CR-7394-01 13 29278221 29278221 C T SLC46A3 Missense_Mutation p.C387Y 0.06 deleterious(0.03) possibly_damaging(0.851) TCGA-CR-7394-01 13 33859613 33859613 G C STARD13 Missense_Mutation p.Q55E 0.06 tolerated(1) benign(0.007) TCGA-CR-7394-01 13 40261891 40261891 G A COG6 Missense_Mutation p.E322K 0.07 deleterious(0) probably_damaging(0.994) TCGA-CR-7394-01 13 44463085 44463085 C T LACC1 Missense_Mutation p.P367L 0.05 tolerated(0.06) benign(0.033) TCGA-CR-7394-01 14 105418199 105418199 C T AHNAK2 Missense_Mutation p.V1197M 0.08 benign(0.009) TCGA-CR-7394-01 14 21822578 21822578 C T SUPT16H Missense_Mutation p.E928K 0.11 deleterious(0.01) benign(0.04) TCGA-CR-7394-01 14 21825367 21825367 C T SUPT16H Silent p.K883K 0.14 TCGA-CR-7394-01 14 21826091 21826091 C T SUPT16H Missense_Mutation p.E829K 0.10 deleterious(0) probably_damaging(0.992) TCGA-CR-7394-01 14 61510219 61510219 G C SLC38A6 Missense_Mutation p.E248Q 0.08 tolerated(1) benign(0.202) TCGA-CR-7394-01 14 92625471 92625471 G A CPSF2 Missense_Mutation p.D656N 0.12 tolerated(0.43) benign(0.022) TCGA-CR-7394-01 14 94750479 94750479 T G SERPINA10 Silent p.T386T 0.20 TCGA-CR-7394-01 15 42067523 42067523 G A MAPKBP1 Missense_Mutation p.R17K 0.12 deleterious(0.04) possibly_damaging(0.876) TCGA-CR-7394-01 15 56144728 56144728 G A NEDD4 Missense_Mutation p.S694L 0.08 deleterious(0.01) probably_damaging(0.94) TCGA-CR-7394-01 15 67629376 67629376 C A IQCH Missense_Mutation p.H151N 0.10 tolerated(0.46) benign(0.092) TCGA-CR-7394-01 15 79092834 79092834 G A ADAMTS7 Silent p.D52D 0.12 TCGA-CR-7394-01 15 91172509 91172509 C T CRTC3 Silent p.L337L 0.12 TCGA-CR-7394-01 16 20554519 20554519 G C ACSM2B Missense_Mutation p.I449M 0.05 tolerated(0.21) benign(0.174) TCGA-CR-7394-01 16 31477278 31477278 G A ARMC5 Missense_Mutation p.A658T 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-7394-01 17 17120452 17120452 G A FLCN Silent p.L369L 0.12 TCGA-CR-7394-01 17 18881375 18881375 G A FAM83G Missense_Mutation p.P535L 0.05 tolerated(0.16) benign(0.006) TCGA-CR-7394-01 17 27047570 27047570 G T RPL23A Intron 0.06 TCGA-CR-7394-01 17 29559140 29559140 C T NF1 Missense_Mutation p.L1083F 0.13 deleterious(0) possibly_damaging(0.541) TCGA-CR-7394-01 17 31094700 31094700 T A MYO1D Missense_Mutation p.E262V 0.12 deleterious(0.03) possibly_damaging(0.616) TCGA-CR-7394-01 17 34236351 34236351 C T AC015849.16 RNA 0.06 TCGA-CR-7394-01 17 38256348 38256348 G A NR1D1 5'UTR 0.17 TCGA-CR-7394-01 17 56320355 56320355 C G LPO Silent p.L5L 0.05 TCGA-CR-7394-01 17 60598197 60598197 G C TLK2 Missense_Mutation p.E49Q 0.06 deleterious_low_confidence(0.03) benign(0.169) TCGA-CR-7394-01 17 70120527 70120527 G A SOX9 Silent p.%3D 0.05 TCGA-CR-7394-01 17 7253489 7253489 C G ACAP1 Missense_Mutation p.R669G 0.07 tolerated(0.38) benign(0.017) TCGA-CR-7394-01 17 73729739 73729739 C T ITGB4 Silent p.F541F 0.09 TCGA-CR-7394-01 17 74287504 74287504 G A QRICH2 Missense_Mutation p.L936F 0.09 tolerated(0.13) possibly_damaging(0.571) TCGA-CR-7394-01 17 76060832 76060832 G A TNRC6C Missense_Mutation p.V806I 0.08 tolerated(0.09) benign(0.007) TCGA-CR-7394-01 17 7761549 7761549 G A CYB5D1 Missense_Mutation p.D33N 0.07 deleterious(0.01) probably_damaging(1) TCGA-CR-7394-01 18 22805793 22805793 C A ZNF521 Nonsense_Mutation p.E697* 0.06 TCGA-CR-7394-01 18 34833849 34833849 C T CELF4 Missense_Mutation p.M462I 0.11 deleterious(0) possibly_damaging(0.634) TCGA-CR-7394-01 18 8718593 8718593 G C SOGA2 Missense_Mutation p.E49Q 0.12 tolerated(1) benign(0.019) TCGA-CR-7394-01 18 9931855 9931855 C G VAPA Missense_Mutation p.S43W 0.05 deleterious(0.02) probably_damaging(1) TCGA-CR-7394-01 19 10394872 10394872 C T ICAM1 Silent p.N267N 0.10 TCGA-CR-7394-01 19 1073166 1073166 G A HMHA1 Missense_Mutation p.R163H 0.08 tolerated(0.22) benign(0.287) TCGA-CR-7394-01 19 11505030 11505030 G A RGL3 3'UTR 0.23 TCGA-CR-7394-01 19 12384320 12384320 C T ZNF44 Silent p.E298E 0.06 TCGA-CR-7394-01 19 13991286 13991286 C T NANOS3 Missense_Mutation p.S183L 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-CR-7394-01 19 14569134 14569134 G C PKN1 Missense_Mutation p.E462Q 0.06 tolerated(1) benign(0.006) TCGA-CR-7394-01 19 22362346 22362346 C T ZNF676 3'UTR 0.20 TCGA-CR-7394-01 19 36113850 36113850 G A HAUS5 Silent p.L619L 0.16 TCGA-CR-7394-01 19 39867397 39867397 G A SAMD4B Missense_Mutation p.R357H 0.16 deleterious(0.04) benign(0.081) TCGA-CR-7394-01 19 39971230 39971230 C T TIMM50 Missense_Mutation p.R16C 0.09 deleterious_low_confidence(0.01) benign(0.14) TCGA-CR-7394-01 19 44635574 44635574 C A ZNF225 Missense_Mutation p.F269L 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7394-01 19 45419544 45419544 C G APOC1 Missense_Mutation p.I52M 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-CR-7394-01 19 46057068 46057068 C G OPA3 Intron 0.18 TCGA-CR-7394-01 19 46057095 46057095 C T OPA3 Intron 0.13 TCGA-CR-7394-01 19 55143593 55143593 C T LILRB1 Missense_Mutation p.P189L 0.10 deleterious(0.02) benign(0.042) TCGA-CR-7394-01 19 55450785 55450785 G A NLRP7 Missense_Mutation p.H468Y 0.07 tolerated(0.08) possibly_damaging(0.566) TCGA-CR-7394-01 19 58773055 58773055 A G ZNF544 Silent p.K361K 0.12 TCGA-CR-7394-01 1 103471837 103471837 G A COL11A1 Missense_Mutation p.T573M 0.14 unknown(0) TCGA-CR-7394-01 1 110199472 110199472 G A GSTM4 Intron 0.10 TCGA-CR-7394-01 1 120480557 120480557 C T NOTCH2 Missense_Mutation p.C1087Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-7394-01 1 120548096 120548096 G A NOTCH2 Nonsense_Mutation p.R91* 0.07 TCGA-CR-7394-01 1 153964115 153964115 C G RPS27 Silent p.L63L 0.08 TCGA-CR-7394-01 1 156280738 156280738 C G CCT3 Intron 0.08 TCGA-CR-7394-01 1 19583616 19583616 G A MRTO4 Missense_Mutation p.E84K 0.07 deleterious(0.01) benign(0.359) TCGA-CR-7394-01 1 205039123 205039123 C T CNTN2 Missense_Mutation p.R789C 0.11 deleterious(0) probably_damaging(0.953) TCGA-CR-7394-01 1 216680464 216680464 C A ESRRG Silent p.A410A 0.15 TCGA-CR-7394-01 1 227300480 227300480 C T CDC42BPA Silent p.Q594Q 0.07 TCGA-CR-7394-01 1 231830190 231830190 G A DISC1 Missense_Mutation p.C229Y 0.13 deleterious(0.03) probably_damaging(0.984) TCGA-CR-7394-01 1 245850124 245850124 C T KIF26B Missense_Mutation p.S1280F 0.10 deleterious(0) unknown(0) TCGA-CR-7394-01 1 33832909 33832909 G A PHC2 Silent p.L262L 0.04 TCGA-CR-7394-01 1 38027808 38027808 G A DNALI1 Missense_Mutation p.E257K 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-CR-7394-01 1 46660524 46660524 C T POMGNT1 Missense_Mutation p.R215Q 0.14 benign(0.001) TCGA-CR-7394-01 1 53537242 53537242 C T PODN Silent p.L164L 0.11 TCGA-CR-7394-01 1 62235043 62235043 G A INADL Missense_Mutation p.G158E 0.10 deleterious(0.02) probably_damaging(0.985) TCGA-CR-7394-01 1 63003606 63003606 G T DOCK7 Missense_Mutation p.P1112T 0.09 tolerated(0.18) benign(0.099) TCGA-CR-7394-01 1 64643982 64643982 C G ROR1 Nonsense_Mutation p.S753* 0.07 TCGA-CR-7394-01 1 65278428 65278428 C G RAVER2 Missense_Mutation p.S550C 0.09 tolerated(0.16) benign(0.047) TCGA-CR-7394-01 1 8425906 8425906 G A RERE Silent p.V471V 0.05 TCGA-CR-7394-01 20 31611154 31611154 G A BPIFB2 Missense_Mutation p.V448M 0.09 tolerated(0.28) probably_damaging(0.954) TCGA-CR-7394-01 20 870886 870886 C T ANGPT4 Silent p.Q145Q 0.07 TCGA-CR-7394-01 21 31812939 31812939 A T KRTAP15-1 Silent p.G98G 0.07 TCGA-CR-7394-01 21 45821618 45821618 C T TRPM2 Silent p.F792F 0.08 TCGA-CR-7394-01 22 38041500 38041500 G A SH3BP1 Missense_Mutation p.E303K 0.14 tolerated(0.42) possibly_damaging(0.593) TCGA-CR-7394-01 22 39884499 39884499 C G MGAT3 Missense_Mutation p.R383G 0.12 deleterious(0.02) probably_damaging(0.981) TCGA-CR-7394-01 22 41568590 41568590 G A EP300 Missense_Mutation p.E1514K 0.13 probably_damaging(0.995) TCGA-CR-7394-01 22 42461814 42461814 C T NAGA Silent p.L229L 0.08 TCGA-CR-7394-01 22 45802535 45802535 C T SMC1B Missense_Mutation p.E141K 0.10 deleterious(0) probably_damaging(0.999) TCGA-CR-7394-01 2 136536546 136536546 C T UBXN4 Missense_Mutation p.S361L 0.10 deleterious(0) possibly_damaging(0.717) TCGA-CR-7394-01 2 157352715 157352715 G A GPD2 Missense_Mutation p.A88T 0.14 deleterious(0) probably_damaging(0.954) TCGA-CR-7394-01 2 191524148 191524148 C T NAB1 Silent p.F82F 0.05 TCGA-CR-7394-01 2 191524152 191524152 C G NAB1 Missense_Mutation p.Q84E 0.05 tolerated(0.07) benign(0.033) TCGA-CR-7394-01 2 198299715 198299715 C T SF3B1 Silent p.K3K 0.07 TCGA-CR-7394-01 2 202137620 202137620 G C CASP8 Splice_Site p.X243_splice 0.05 TCGA-CR-7394-01 2 202340452 202340452 G A STRADB Missense_Mutation p.G179S 0.17 deleterious(0.01) probably_damaging(0.97) TCGA-CR-7394-01 2 207530693 207530693 C T DYTN Silent p.Q347Q 0.10 TCGA-CR-7394-01 2 212530201 212530201 C T ERBB4 Missense_Mutation p.G573D 0.08 tolerated(0.06) probably_damaging(0.987) TCGA-CR-7394-01 2 220355164 220355164 G A SPEG Silent p.E2985E 0.12 TCGA-CR-7394-01 2 99013345 99013345 T C CNGA3 Missense_Mutation p.I571T 0.12 deleterious(0) possibly_damaging(0.891) TCGA-CR-7394-01 3 105253681 105253681 A G ALCAM Missense_Mutation p.D241G 0.16 tolerated(0.08) benign(0.01) TCGA-CR-7394-01 3 120977900 120977900 C T STXBP5L Missense_Mutation p.R615W 0.11 deleterious(0) possibly_damaging(0.879) TCGA-CR-7394-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.22 tolerated(0.36) benign(0.4) TCGA-CR-7394-01 3 197349060 197349060 C T AC024560.3 Intron 0.13 TCGA-CR-7394-01 3 3215782 3215782 A G CRBN Missense_Mutation p.L113S 0.07 deleterious(0) benign(0.063) TCGA-CR-7394-01 3 43381993 43381993 T C SNRK Splice_Site p.X315_splice 0.12 TCGA-CR-7394-01 3 48629337 48629337 C G COL7A1 Missense_Mutation p.E451Q 0.12 unknown(0) TCGA-CR-7394-01 3 58852289 58852289 A T C3orf67 Intron 0.12 TCGA-CR-7394-01 4 110791477 110791477 G T LRIT3 Silent p.G524G 0.12 TCGA-CR-7394-01 4 123159467 123159467 G A KIAA1109 Silent p.E1265E 0.10 TCGA-CR-7394-01 4 187535344 187535344 C T FAT1 Splice_Site p.X3077_splice 0.24 TCGA-CR-7394-01 4 56830508 56830508 C A CEP135 Silent p.V256V 0.11 TCGA-CR-7394-01 4 69093613 69093613 T C TMPRSS11B 3'UTR 0.12 TCGA-CR-7394-01 4 71509145 71509145 C T ENAM Nonsense_Mutation p.Q668* 0.11 TCGA-CR-7394-01 4 77057369 77057369 G A NUP54 Silent p.F164F 0.07 TCGA-CR-7394-01 4 95497118 95497118 G A PDLIM5 Missense_Mutation p.E106K 0.15 deleterious(0.04) benign(0.087) TCGA-CR-7394-01 5 10423860 10423860 G C MARCH6 Missense_Mutation p.G766A 0.10 deleterious(0.01) possibly_damaging(0.858) TCGA-CR-7394-01 5 11346704 11346704 G A CTNND2 Nonsense_Mutation p.Q470* 0.10 TCGA-CR-7394-01 5 137593489 137593489 G A GFRA3 Silent p.A208A 0.14 TCGA-CR-7394-01 5 140764270 140764270 G T PCDHGA7 Missense_Mutation p.A602S 0.09 deleterious_low_confidence(0.02) probably_damaging(0.936) TCGA-CR-7394-01 5 1416262 1416262 C A SLC6A3 Missense_Mutation p.V328L 0.06 deleterious(0) possibly_damaging(0.838) TCGA-CR-7394-01 5 146804509 146804509 G C DPYSL3 Missense_Mutation p.I133M 0.10 deleterious(0) possibly_damaging(0.573) TCGA-CR-7394-01 5 66461496 66461496 G A MAST4 Silent p.P2163P 0.21 TCGA-CR-7394-01 5 66479817 66479817 C T CD180 Missense_Mutation p.R285H 0.14 tolerated(1) benign(0) TCGA-CR-7394-01 5 68590675 68590675 G A CCDC125 Missense_Mutation p.S290F 0.07 deleterious(0.03) probably_damaging(0.991) TCGA-CR-7394-01 5 96498921 96498921 C T RIOK2 Silent p.V501V 0.08 TCGA-CR-7394-01 6 132201070 132201070 C T ENPP1 Nonsense_Mutation p.Q666* 0.10 TCGA-CR-7394-01 6 152772295 152772295 C G SYNE1 Missense_Mutation p.D1025H 0.06 benign(0.221) TCGA-CR-7394-01 6 157256619 157256619 A G ARID1B Missense_Mutation p.Y649C 0.12 probably_damaging(0.999) TCGA-CR-7394-01 6 26093372 26093372 C T HFE Silent p.V306V 0.09 TCGA-CR-7394-01 6 26252218 26252218 G C HIST1H2BH Missense_Mutation p.E114Q 0.04 deleterious_low_confidence(0.02) benign(0.192) TCGA-CR-7394-01 6 42231033 42231033 G A TRERF1 Intron 0.15 TCGA-CR-7394-01 6 44201176 44201176 G C SLC29A1 Missense_Mutation p.E428Q 0.06 deleterious(0) probably_damaging(1) TCGA-CR-7394-01 7 128356921 128356921 C T FAM71F1 Silent p.L102L 0.16 TCGA-CR-7394-01 7 138455987 138455987 C T ATP6V0A4 Silent p.V2V 0.08 TCGA-CR-7394-01 7 148487477 148487477 C T CUL1 Nonsense_Mutation p.Q584* 0.07 TCGA-CR-7394-01 7 15725557 15725557 C T MEOX2 Silent p.A157A 0.07 TCGA-CR-7394-01 7 50534944 50534944 C T DDC Missense_Mutation p.V404I 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-CR-7394-01 7 99701070 99701070 G A AP4M1 Silent p.L130L 0.10 TCGA-CR-7394-01 8 12878806 12878806 G A KIAA1456 Silent p.Q206Q 0.10 TCGA-CR-7394-01 8 145947129 145947129 G A ZNF251 Missense_Mutation p.P639L 0.13 tolerated(0.07) possibly_damaging(0.713) TCGA-CR-7394-01 8 28573933 28573933 G C EXTL3 Missense_Mutation p.K119N 0.25 tolerated(0.43) benign(0.004) TCGA-CR-7394-01 8 55542326 55542326 A G RP1 Missense_Mutation p.T1962A 0.08 deleterious(0.02) benign(0.013) TCGA-CR-7394-01 9 125273592 125273592 C T OR1J2 Missense_Mutation p.A171V 0.11 deleterious_low_confidence(0.01) benign(0.067) TCGA-CR-7394-01 9 125865544 125865544 C T RABGAP1 3'UTR 0.24 TCGA-CR-7394-01 9 139395018 139395018 G A NOTCH1 Nonsense_Mutation p.Q1974* 0.16 TCGA-CR-7394-01 9 140946543 140946543 G A CACNA1B Splice_Site p.X1237_splice 0.32 TCGA-CR-7394-01 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.11 TCGA-CR-7394-01 9 34647693 34647693 G C GALT Missense_Mutation p.R123P 0.10 deleterious(0) benign(0.015) TCGA-CR-7394-01 9 80858414 80858414 G A CEP78 Missense_Mutation p.E214K 0.12 deleterious(0) possibly_damaging(0.879) TCGA-CR-7394-01 9 84564179 84564179 A C RP11-383M4.6 Intron 0.50 TCGA-CR-7394-01 9 95219641 95219641 C G ASPN Missense_Mutation p.E358Q 0.11 deleterious(0.02) possibly_damaging(0.51) TCGA-CR-7394-01 9 98268846 98268846 C G PTCH1 Silent p.L79L 0.09 TCGA-CR-7394-01 9 99327111 99327111 A G CDC14B Missense_Mutation p.L92P 0.20 deleterious(0) probably_damaging(1) TCGA-CR-7394-01 X 112048305 112048305 C T AMOT Missense_Mutation p.R549H 0.04 unknown(0) TCGA-CR-7394-01 X 114357438 114357438 A G LRCH2 Missense_Mutation p.V662A 0.15 deleterious(0) probably_damaging(0.997) TCGA-CR-7394-01 X 118220735 118220735 C T KIAA1210 Silent p.S1486S 0.09 TCGA-CR-7394-01 X 150828296 150828296 C T PASD1 Missense_Mutation p.P277S 0.08 tolerated(0.5) benign(0.099) TCGA-CR-7394-01 X 151821396 151821396 G T GABRQ Missense_Mutation p.K517N 0.06 deleterious_low_confidence(0.01) benign(0.161) TCGA-CR-7394-01 X 152960239 152960239 G A SLC6A8 Silent p.P554P 0.19 TCGA-CR-7394-01 X 153191667 153191667 C T ARHGAP4 5'UTR 0.21 TCGA-CR-7394-01 X 18660071 18660071 A G RS1 3'UTR 0.11 TCGA-CR-7394-01 X 20033405 20033405 T G MAP7D2 Missense_Mutation p.Q562P 0.18 deleterious(0.01) unknown(0) TCGA-CR-7394-01 X 46915504 46915504 G C JADE3 Missense_Mutation p.M488I 0.10 deleterious(0) probably_damaging(0.993) TCGA-CR-7394-01 X 70470529 70470529 C T ZMYM3 Missense_Mutation p.D276N 0.22 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CR-7394-01 X 8759387 8759387 T G FAM9A Missense_Mutation p.I322L 0.29 tolerated_low_confidence(0.06) unknown(0) TCGA-CR-7394-01 Y 4968225 4968225 G A PCDH11Y Missense_Mutation p.R869H 0.31 tolerated(0.05) benign(0.021) TCGA-CR-7395-01 10 105205279 105205279 G A PDCD11 Silent p.E1863E 0.12 TCGA-CR-7395-01 10 125530458 125530458 G A CPXM2 Missense_Mutation p.S359L 0.12 deleterious(0) probably_damaging(0.993) TCGA-CR-7395-01 10 134942326 134942326 G A GPR123 Missense_Mutation p.D332N 0.18 tolerated(0.66) benign(0.002) TCGA-CR-7395-01 10 22048479 22048479 A C DNAJC1 Missense_Mutation p.L406V 0.15 tolerated(0.39) benign(0.024) TCGA-CR-7395-01 10 26417382 26417382 A C MYO3A Missense_Mutation p.K726T 0.11 tolerated(0.06) benign(0.069) TCGA-CR-7395-01 10 64967812 64967812 G A JMJD1C Missense_Mutation p.A1206V 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-7395-01 10 74322720 74322720 T G MICU1 Missense_Mutation p.K88T 0.11 tolerated(0.36) benign(0.001) TCGA-CR-7395-01 10 90665380 90665380 T A STAMBPL1 Missense_Mutation p.L71M 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-CR-7395-01 10 91005441 91005441 G C LIPA Missense_Mutation p.S74C 0.10 deleterious(0.05) benign(0.053) TCGA-CR-7395-01 10 97917735 97917735 T C ZNF518A RNA 0.09 TCGA-CR-7395-01 11 108121428 108121428 G C ATM Missense_Mutation p.W412C 0.16 deleterious(0) probably_damaging(0.954) TCGA-CR-7395-01 11 128842334 128842334 C T ARHGAP32 Intron 0.07 TCGA-CR-7395-01 11 133791272 133791272 C T IGSF9B Missense_Mutation p.S783N 0.16 deleterious(0) probably_damaging(0.995) TCGA-CR-7395-01 11 4976514 4976514 C T OR51A2 Missense_Mutation p.A144T 0.21 tolerated(0.12) benign(0.012) TCGA-CR-7395-01 11 534288 534288 C T HRAS Missense_Mutation p.G12D 0.11 deleterious(0) possibly_damaging(0.56) TCGA-CR-7395-01 11 55904603 55904603 T C OR8J3 Missense_Mutation p.I198V 0.13 tolerated(0.52) benign(0) TCGA-CR-7395-01 11 56058468 56058468 T G OR8H1 Missense_Mutation p.Q24P 0.08 deleterious(0.01) benign(0.005) TCGA-CR-7395-01 12 102064158 102064158 G A MYBPC1 Missense_Mutation p.E855K 0.11 deleterious(0) probably_damaging(0.998) TCGA-CR-7395-01 12 103288646 103288646 C T PAH Silent p.K73K 0.19 TCGA-CR-7395-01 12 112690297 112690297 C T HECTD4 Missense_Mutation p.M1015I 0.13 possibly_damaging(0.568) TCGA-CR-7395-01 12 2061959 2061959 T G DCP1B Missense_Mutation p.N383H 0.22 tolerated(0.56) benign(0.003) TCGA-CR-7395-01 12 46233280 46233280 G A ARID2 Splice_Site p.X500_splice 0.15 TCGA-CR-7395-01 12 46285669 46285669 C T ARID2 Nonsense_Mutation p.R1677* 0.08 TCGA-CR-7395-01 12 4668097 4668097 C T RAD51AP1 Missense_Mutation p.R333C 0.08 tolerated(0.07) benign(0.111) TCGA-CR-7395-01 12 51584078 51584078 G A POU6F1 Silent p.R286R 0.13 TCGA-CR-7395-01 12 52709762 52709762 C T KRT83 Missense_Mutation p.E393K 0.07 deleterious(0) probably_damaging(0.954) TCGA-CR-7395-01 13 25049615 25049615 C T PARP4 Missense_Mutation p.A637T 0.15 deleterious(0) probably_damaging(0.983) TCGA-CR-7395-01 13 53217120 53217120 C G HNRNPA1L2 Missense_Mutation p.Q165E 0.10 deleterious(0.01) benign(0.313) TCGA-CR-7395-01 13 75911119 75911119 C T TBC1D4 Missense_Mutation p.D557N 0.16 deleterious(0) probably_damaging(0.999) TCGA-CR-7395-01 14 105916417 105916417 G A MTA1 Silent p.E88E 0.13 TCGA-CR-7395-01 14 106053596 106053596 G A IGHA2 Missense_Mutation p.T234M 0.10 deleterious(0) probably_damaging(0.996) TCGA-CR-7395-01 14 20389087 20389087 A C OR4K5 Missense_Mutation p.T108P 0.07 deleterious(0.01) possibly_damaging(0.772) TCGA-CR-7395-01 14 20529070 20529070 G A OR4L1 Silent p.L289L 0.14 TCGA-CR-7395-01 14 24030847 24030847 G A AP1G2 Intron 0.18 TCGA-CR-7395-01 14 24795367 24795367 G A ADCY4 Missense_Mutation p.R525C 0.14 tolerated(0.1) possibly_damaging(0.837) TCGA-CR-7395-01 14 36039926 36039926 C G RALGAPA1 Missense_Mutation p.D1959H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CR-7395-01 14 94693666 94693666 C T PPP4R4 Intron 0.13 TCGA-CR-7395-01 14 96994296 96994296 G A PAPOLA Missense_Mutation p.E150K 0.19 deleterious(0.02) probably_damaging(0.924) TCGA-CR-7395-01 15 24923550 24923550 G A NPAP1 Missense_Mutation p.E846K 0.10 tolerated(0.78) benign(0.193) TCGA-CR-7395-01 15 26806250 26806250 G C GABRB3 Silent p.V303V 0.13 TCGA-CR-7395-01 15 40630982 40630982 C T C15orf52 Silent p.V162V 0.18 TCGA-CR-7395-01 15 41476415 41476415 T A EXD1 Missense_Mutation p.E420V 0.13 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-CR-7395-01 15 41476416 41476416 C T EXD1 Missense_Mutation p.E420K 0.13 tolerated_low_confidence(0.33) benign(0.04) TCGA-CR-7395-01 15 85201312 85201312 G A NMB Silent p.V24V 0.23 TCGA-CR-7395-01 15 91448552 91448552 C T MAN2A2 Silent p.I68I 0.09 TCGA-CR-7395-01 16 15501680 15501680 G A MPV17L Splice_Site p.X128_splice 0.13 TCGA-CR-7395-01 16 16302657 16302657 C T ABCC6 Missense_Mutation p.R241K 0.09 tolerated(1) benign(0.001) TCGA-CR-7395-01 16 1831369 1831369 G A SPSB3 Missense_Mutation p.S39F 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.729) TCGA-CR-7395-01 16 22320755 22320755 G A POLR3E Silent p.L96L 0.12 TCGA-CR-7395-01 16 22926538 22926538 C G HS3ST2 Nonsense_Mutation p.Y253* 0.09 TCGA-CR-7395-01 16 30723672 30723672 G A SRCAP Silent p.K635K 0.11 TCGA-CR-7395-01 16 46726320 46726320 G C ORC6 Missense_Mutation p.L74F 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-CR-7395-01 16 57157367 57157370 CTGC - CPNE2 Frame_Shift_Del p.C304Sfs*8 0.09 TCGA-CR-7395-01 16 69788590 69788590 T C NOB1 Missense_Mutation p.T35A 0.12 tolerated(0.86) benign(0.001) TCGA-CR-7395-01 16 71683624 71683624 G A PHLPP2 Silent p.L1047L 0.11 TCGA-CR-7395-01 16 72137934 72137934 C T DHX38 Silent p.L638L 0.08 TCGA-CR-7395-01 16 81929467 81929467 G A PLCG2 Silent p.R376R 0.14 TCGA-CR-7395-01 17 16005052 16005052 G A NCOR1 Silent p.S734S 0.15 TCGA-CR-7395-01 17 18874772 18874772 G A FAM83G Missense_Mutation p.S791F 0.14 deleterious(0) probably_damaging(0.998) TCGA-CR-7395-01 17 3724646 3724646 C T C17orf85 Nonsense_Mutation p.W299* 0.09 TCGA-CR-7395-01 17 38933275 38933275 C G KRT27 Missense_Mutation p.K452N 0.19 tolerated_low_confidence(0.14) benign(0.326) TCGA-CR-7395-01 17 55183032 55183032 C T AKAP1 Silent p.S69S 0.17 TCGA-CR-7395-01 17 63533163 63533163 G A AXIN2 Silent p.T577T 0.20 TCGA-CR-7395-01 17 6483153 6483153 C G KIAA0753 Missense_Mutation p.G940R 0.09 tolerated(0.23) probably_damaging(0.999) TCGA-CR-7395-01 17 74071008 74071008 C T GALR2 Missense_Mutation p.A15V 0.30 tolerated(0.34) benign(0) TCGA-CR-7395-01 17 76539977 76539977 C T DNAH17 Missense_Mutation p.V832I 0.13 benign(0.001) TCGA-CR-7395-01 17 78023899 78023899 G A CCDC40 Missense_Mutation p.E326K 0.12 deleterious(0) possibly_damaging(0.792) TCGA-CR-7395-01 17 79226904 79226904 C T SLC38A10 Silent p.P475P 0.09 TCGA-CR-7395-01 18 24081097 24081097 C G KCTD1 Missense_Mutation p.D35H 0.05 deleterious(0) probably_damaging(0.999) TCGA-CR-7395-01 18 28914090 28914090 C G DSG1 Missense_Mutation p.I310M 0.10 deleterious(0.01) possibly_damaging(0.839) TCGA-CR-7395-01 18 5419910 5419910 C G EPB41L3 Intron 0.11 TCGA-CR-7395-01 18 580651 580651 G T CETN1 Silent p.T81T 0.09 TCGA-CR-7395-01 18 59221475 59221475 C A CDH20 Silent p.I651I 0.10 TCGA-CR-7395-01 19 11943309 11943309 C T ZNF440 Nonsense_Mutation p.Q440* 0.11 TCGA-CR-7395-01 19 14161619 14161619 C A IL27RA Silent p.P484P 0.11 TCGA-CR-7395-01 19 16060277 16060277 T G OR10H4 Missense_Mutation p.S154A 0.14 tolerated(0.09) benign(0.042) TCGA-CR-7395-01 19 2121736 2121736 C T AP3D1 Silent p.G366G 0.12 TCGA-CR-7395-01 19 37677063 37677063 A C ZNF585B Missense_Mutation p.I459S 0.10 deleterious(0.02) benign(0.15) TCGA-CR-7395-01 19 39798886 39798886 C T LRFN1 Missense_Mutation p.R568H 0.15 tolerated(0.23) benign(0.001) TCGA-CR-7395-01 19 52001378 52001378 C A SIGLEC12 Silent p.L433L 0.13 TCGA-CR-7395-01 19 55301500 55301500 T C CTB-61M7.1 RNA 0.20 TCGA-CR-7395-01 1 155264372 155264372 C T PKLR Missense_Mutation p.R289Q 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7395-01 1 186026439 186026439 G A HMCN1 Silent p.L2406L 0.12 TCGA-CR-7395-01 1 197128556 197128556 C T ZBTB41 Missense_Mutation p.G888E 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-7395-01 1 204085730 204085730 G A SOX13 Missense_Mutation p.E172K 0.08 deleterious(0.02) possibly_damaging(0.883) TCGA-CR-7395-01 1 204943329 204943329 G A NFASC Silent p.S434S 0.20 TCGA-CR-7395-01 1 231057232 231057232 C G TTC13 Missense_Mutation p.M611I 0.09 tolerated(1) benign(0.002) TCGA-CR-7395-01 1 247921358 247921358 C A OR1C1 Silent p.V117V 0.10 TCGA-CR-7395-01 1 36785434 36785434 C T SH3D21 Silent p.L390L 0.20 TCGA-CR-7395-01 1 53580588 53580588 G A SLC1A7 Silent p.L91L 0.24 TCGA-CR-7395-01 1 63944501 63944502 TT - ITGB3BP Frame_Shift_Del p.K102Efs*11 0.12 TCGA-CR-7395-01 1 65142628 65142628 A G CACHD1 Missense_Mutation p.D958G 0.11 tolerated(0.06) benign(0.307) TCGA-CR-7395-01 1 78325024 78325024 G C FAM73A Missense_Mutation p.D381H 0.12 deleterious(0) probably_damaging(0.97) TCGA-CR-7395-01 1 84864283 84864283 A T DNASE2B Silent p.T12T 0.05 TCGA-CR-7395-01 1 85648848 85648848 A T SYDE2 Missense_Mutation p.L493M 0.12 tolerated(0.06) possibly_damaging(0.873) TCGA-CR-7395-01 20 13280034 13280034 C T ISM1 Silent p.N441N 0.14 TCGA-CR-7395-01 21 37788639 37788639 G A CHAF1B Missense_Mutation p.G552E 0.10 tolerated_low_confidence(0.25) benign(0.002) TCGA-CR-7395-01 22 31285493 31285493 C T OSBP2 Missense_Mutation p.S498L 0.09 tolerated(0.08) benign(0.01) TCGA-CR-7395-01 22 40343065 40343065 G C GRAP2 Intron 0.13 TCGA-CR-7395-01 22 41572250 41572250 G A EP300 Splice_Site p.X1594_splice 0.05 TCGA-CR-7395-01 22 44340652 44340652 G A PNPLA3 Silent p.L398L 0.15 TCGA-CR-7395-01 2 107032306 107032306 C T RGPD3 Silent p.K1688K 0.08 TCGA-CR-7395-01 2 112608430 112608430 T C ANAPC1 Missense_Mutation p.M525V 0.16 tolerated(0.53) benign(0.002) TCGA-CR-7395-01 2 11758602 11758602 G A GREB1 Missense_Mutation p.D1201N 0.32 tolerated(0.08) benign(0.294) TCGA-CR-7395-01 2 121748215 121748215 C T GLI2 Silent p.L1575L 0.12 TCGA-CR-7395-01 2 135744823 135744823 G A MAP3K19 Missense_Mutation p.S540L 0.10 deleterious(0.01) benign(0.132) TCGA-CR-7395-01 2 167262040 167262040 C T SCN7A 3'UTR 0.22 TCGA-CR-7395-01 2 170050337 170050337 C T LRP2 Missense_Mutation p.E2922K 0.20 benign(0.166) TCGA-CR-7395-01 2 179360322 179360322 G C PLEKHA3 Missense_Mutation p.E184Q 0.12 deleterious(0.05) benign(0.046) TCGA-CR-7395-01 2 179481235 179481235 G A TTN Nonsense_Mutation p.R16095* 0.24 TCGA-CR-7395-01 2 198593142 198593142 T C BOLL 3'UTR 0.19 TCGA-CR-7395-01 2 202131442 202131443 - C CASP8 Frame_Shift_Ins p.L138Pfs*4 0.17 TCGA-CR-7395-01 2 202337702 202337702 C T STRADB Missense_Mutation p.S73F 0.11 tolerated(0.09) benign(0.03) TCGA-CR-7395-01 2 209308254 209308254 T C PTH2R Missense_Mutation p.S231P 0.10 tolerated(0.1) probably_damaging(0.962) TCGA-CR-7395-01 2 217124235 217124235 G A MARCH4 Missense_Mutation p.P345S 0.14 tolerated(0.62) benign(0.007) TCGA-CR-7395-01 2 219527683 219527683 G A BCS1L Missense_Mutation p.E323K 0.11 deleterious(0) probably_damaging(0.996) TCGA-CR-7395-01 2 25468900 25468900 C T DNMT3A Missense_Mutation p.R488Q 0.13 tolerated(0.22) benign(0.043) TCGA-CR-7395-01 2 30961324 30961324 C T CAPN13 Splice_Site p.X513_splice 0.15 TCGA-CR-7395-01 2 38976747 38976747 C T SRSF7 Missense_Mutation p.D104N 0.19 tolerated(0.13) possibly_damaging(0.636) TCGA-CR-7395-01 2 62099641 62099641 C T CCT4 Missense_Mutation p.R403H 0.14 deleterious(0) probably_damaging(0.992) TCGA-CR-7395-01 3 110831075 110831075 G A PVRL3 Missense_Mutation p.R120K 0.12 deleterious(0.03) benign(0.068) TCGA-CR-7395-01 3 134251719 134251719 G A CEP63 Missense_Mutation p.E140K 0.27 tolerated(0.17) possibly_damaging(0.503) TCGA-CR-7395-01 3 137483941 137483941 C G SOX14 Silent p.L105L 0.16 TCGA-CR-7395-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.15 deleterious(0.04) probably_damaging(0.96) TCGA-CR-7395-01 3 37388711 37388711 C T GOLGA4 Missense_Mutation p.S2182L 0.09 benign(0.073) TCGA-CR-7395-01 3 39230363 39230363 T G XIRP1 Silent p.R192R 0.08 TCGA-CR-7395-01 3 39307506 39307506 G A CX3CR1 Silent p.F197F 0.10 TCGA-CR-7395-01 3 44609918 44609918 C T ZKSCAN7 Silent p.A268A 0.12 TCGA-CR-7395-01 3 44609921 44609921 C T ZKSCAN7 Silent p.S269S 0.12 TCGA-CR-7395-01 3 49924581 49924581 C T MST1R 3'UTR 0.29 TCGA-CR-7395-01 3 51746802 51746802 G A GRM2 Missense_Mutation p.R255Q 0.15 tolerated(0.18) benign(0.206) TCGA-CR-7395-01 3 97868522 97868522 A T OR5H14 Missense_Mutation p.K98M 0.13 tolerated(1) benign(0.001) TCGA-CR-7395-01 3 97887666 97887666 G C OR5H15 Silent p.G41G 0.09 TCGA-CR-7395-01 4 156618130 156618130 A G GUCY1A3 Silent p.S37S 0.10 TCGA-CR-7395-01 4 187628809 187628809 G A FAT1 Nonsense_Mutation p.Q725* 0.16 TCGA-CR-7395-01 4 1902711 1902712 - C WHSC1 Frame_Shift_Ins p.N113* 0.10 TCGA-CR-7395-01 4 20611715 20611715 G T SLIT2 Missense_Mutation p.G1258C 0.13 deleterious(0) probably_damaging(1) TCGA-CR-7395-01 4 37592483 37592483 C T C4orf19 Missense_Mutation p.S269L 0.09 tolerated(0.38) possibly_damaging(0.716) TCGA-CR-7395-01 4 48542543 48542543 C T FRYL Missense_Mutation p.R2041Q 0.22 deleterious(0.04) possibly_damaging(0.778) TCGA-CR-7395-01 5 132210175 132210175 C T LEAP2 3'UTR 0.10 TCGA-CR-7395-01 5 140166069 140166069 G A PCDHA1 Missense_Mutation p.R65Q 0.13 deleterious_low_confidence(0.05) possibly_damaging(0.858) TCGA-CR-7395-01 5 140751849 140751849 C T PCDHGB3 Missense_Mutation p.R630C 0.10 deleterious(0.01) probably_damaging(0.976) TCGA-CR-7395-01 5 145895392 145895392 T C GPR151 Silent p.R95R 0.14 TCGA-CR-7395-01 5 179676105 179676105 C G MAPK9 Missense_Mutation p.D162H 0.11 deleterious(0.04) probably_damaging(0.918) TCGA-CR-7395-01 5 35037140 35037140 G A AGXT2 Silent p.L131L 0.14 TCGA-CR-7395-01 5 37327823 37327823 A C NUP155 Silent p.T644T 0.10 TCGA-CR-7395-01 5 37605304 37605304 G A WDR70 Silent p.Q352Q 0.16 TCGA-CR-7395-01 5 79473837 79473837 C T SERINC5 Missense_Mutation p.C82Y 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7395-01 5 96239261 96239261 T C ERAP2 Missense_Mutation p.V670A 0.09 tolerated(0.3) probably_damaging(0.999) TCGA-CR-7395-01 6 107956508 107956508 G T SOBP Missense_Mutation p.M820I 0.12 deleterious(0.04) benign(0.099) TCGA-CR-7395-01 6 158516741 158516741 C T SYNJ2 Missense_Mutation p.T1279I 0.13 deleterious_low_confidence(0.04) benign(0.046) TCGA-CR-7395-01 6 17551730 17551730 G A CAP2 Silent p.K415K 0.13 TCGA-CR-7395-01 6 18121917 18121917 C T NHLRC1 Silent p.V307V 0.20 TCGA-CR-7395-01 6 18122747 18122747 C G NHLRC1 Missense_Mutation p.E31Q 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7395-01 6 24357946 24357946 C T KAAG1 Nonsense_Mutation p.Q27* 0.13 TCGA-CR-7395-01 6 28294045 28294045 G C ZSCAN31 Missense_Mutation p.H373Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-CR-7395-01 6 29910405 29910405 T G HLA-A Splice_Site p.X25_splice 0.19 TCGA-CR-7395-01 6 32138238 32138238 G A AGPAT1 Silent p.V158V 0.09 TCGA-CR-7395-01 6 33679329 33679329 G A UQCC2 Silent p.T45T 0.13 TCGA-CR-7395-01 6 44988309 44988309 G A SUPT3H Missense_Mutation p.L94F 0.10 tolerated(0.17) benign(0.09) TCGA-CR-7395-01 6 56494093 56494094 TG - DST Frame_Shift_Del p.Q940Ifs*3 0.10 TCGA-CR-7395-01 6 79668289 79668289 G A PHIP Nonsense_Mutation p.R1229* 0.12 TCGA-CR-7395-01 6 83841951 83841951 G A DOPEY1 Silent p.Q891Q 0.05 TCGA-CR-7395-01 6 87725377 87725377 T C HTR1E Missense_Mutation p.S109P 0.11 deleterious(0) probably_damaging(1) TCGA-CR-7395-01 6 87971506 87971506 G A ZNF292 Missense_Mutation p.R2720K 0.11 tolerated_low_confidence(0.13) benign(0.002) TCGA-CR-7395-01 7 110763864 110763864 C T LRRN3 Missense_Mutation p.L346F 0.18 deleterious(0) probably_damaging(1) TCGA-CR-7395-01 7 132192787 132192787 G A PLXNA4 Silent p.F222F 0.06 TCGA-CR-7395-01 7 138602131 138602131 A G KIAA1549 Silent p.A747A 0.14 TCGA-CR-7395-01 7 149461825 149461825 G A ZNF467 Missense_Mutation p.A589V 0.13 tolerated_low_confidence(0.15) benign(0.002) TCGA-CR-7395-01 7 150269980 150269980 G C GIMAP4 Missense_Mutation p.K274N 0.12 tolerated(0.07) benign(0.041) TCGA-CR-7395-01 7 99794806 99794806 C T STAG3 Silent p.I323I 0.09 TCGA-CR-7395-01 8 145736567 145736567 C T MFSD3 3'UTR 0.11 TCGA-CR-7395-01 8 25902267 25902267 C T EBF2 Missense_Mutation p.D37N 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.894) TCGA-CR-7395-01 8 27995259 27995259 C T ELP3 Silent p.L317L 0.07 TCGA-CR-7395-01 8 33408567 33408568 - T RNF122 Frame_Shift_Ins p.Y89Ifs*17 0.13 TCGA-CR-7395-01 8 6566210 6566210 C G AGPAT5 Silent p.L7L 0.12 TCGA-CR-7395-01 8 77761784 77761784 G A ZFHX4 Missense_Mutation p.D1228N 0.09 possibly_damaging(0.728) TCGA-CR-7395-01 9 100425264 100425264 G A NCBP1 Missense_Mutation p.E578K 0.12 tolerated(0.48) possibly_damaging(0.515) TCGA-CR-7395-01 9 124751885 124751885 G A TTLL11 Silent p.C376C 0.12 TCGA-CR-7395-01 9 131864310 131864310 A G CRAT Silent p.S219S 0.14 TCGA-CR-7395-01 9 139316332 139316332 A T PMPCA Missense_Mutation p.N438Y 0.13 deleterious(0) probably_damaging(0.994) TCGA-CR-7395-01 9 139392000 139392000 G A NOTCH1 Missense_Mutation p.P2064L 0.13 deleterious(0) possibly_damaging(0.564) TCGA-CR-7395-01 9 35074164 35074164 C T FANCG Missense_Mutation p.D604N 0.10 tolerated(0.25) benign(0.022) TCGA-CR-7395-01 9 98209652 98209652 C T PTCH1 Missense_Mutation p.G1296R 0.15 tolerated_low_confidence(0.68) benign(0.001) TCGA-CR-7395-01 X 100098950 100098950 T G NOX1 Missense_Mutation p.E562D 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-CR-7395-01 X 100608293 100608293 C G BTK Missense_Mutation p.E599D 0.10 tolerated(0.27) benign(0.012) TCGA-CR-7395-01 X 119504589 119504591 CTT - ATP1B4 In_Frame_Del p.F119del 0.14 TCGA-CR-7395-01 X 123159747 123159747 C T STAG2 Silent p.N34N 0.06 TCGA-CR-7395-01 X 134690127 134690127 T G DDX26B Missense_Mutation p.L365R 0.07 deleterious(0.01) probably_damaging(0.96) TCGA-CR-7395-01 X 153696341 153696341 G A PLXNA3 Missense_Mutation p.E1273K 0.18 deleterious(0) probably_damaging(0.99) TCGA-CR-7395-01 X 153696645 153696645 G A PLXNA3 Splice_Site p.X1322_splice 0.08 TCGA-CR-7395-01 X 154128150 154128150 A C F8 Silent p.S2088S 0.10 TCGA-CR-7395-01 X 1720159 1720159 G A AKAP17A Missense_Mutation p.R587Q 0.11 tolerated_low_confidence(0.17) unknown(0) TCGA-CR-7395-01 X 41048594 41048594 C T USP9X Silent p.D1281D 0.12 TCGA-CR-7395-01 X 48458093 48458093 G A WDR13 Missense_Mutation p.V171M 0.12 tolerated(0.06) possibly_damaging(0.499) TCGA-CR-7395-01 X 53455642 53455642 C T RIBC1 Intron 0.14 TCGA-CR-7395-01 X 63551561 63551561 T A MTMR8 Missense_Mutation p.M410L 0.09 tolerated(0.21) benign(0.013) TCGA-CR-7395-01 X 70607298 70607298 G A TAF1 Missense_Mutation p.R825Q 0.10 deleterious(0) benign(0.364) TCGA-CR-7395-01 X 71694444 71694444 A C HDAC8 Intron 0.10 TCGA-CR-7397-01 10 1284215 1284215 G A ADARB2 Missense_Mutation p.T447M 0.20 deleterious(0.02) possibly_damaging(0.672) TCGA-CR-7397-01 12 113633454 113633454 G A IQCD Missense_Mutation p.R324W 0.18 deleterious_low_confidence(0) unknown(0) TCGA-CR-7397-01 12 130840124 130840124 G A PIWIL1 Missense_Mutation p.R439Q 0.08 tolerated(0.54) benign(0.002) TCGA-CR-7397-01 12 56572620 56572620 C T SMARCC2 Missense_Mutation p.D385N 0.08 deleterious(0.01) benign(0.021) TCGA-CR-7397-01 12 56575490 56575490 C A SMARCC2 Nonsense_Mutation p.E280* 0.07 TCGA-CR-7397-01 14 57746958 57746958 C T AP5M1 Missense_Mutation p.L256F 0.05 deleterious(0.01) probably_damaging(0.972) TCGA-CR-7397-01 14 89130941 89130941 G C EML5 Missense_Mutation p.S1102C 0.06 tolerated(0.05) probably_damaging(0.998) TCGA-CR-7397-01 15 28538128 28538128 C T HERC2 Silent p.L76L 0.10 TCGA-CR-7397-01 16 27751578 27751578 G A KIAA0556 Missense_Mutation p.E654K 0.08 tolerated(0.23) benign(0.029) TCGA-CR-7397-01 16 85699645 85699645 C T GSE1 Missense_Mutation p.S941F 0.06 tolerated(0.14) possibly_damaging(0.862) TCGA-CR-7397-01 17 21319866 21319866 C T KCNJ12 Silent p.L404L 0.06 TCGA-CR-7397-01 17 3470183 3470183 G A SHPK Nonsense_Mutation p.R816* 0.11 TCGA-CR-7397-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.21 deleterious(0) probably_damaging(1) TCGA-CR-7397-01 18 61309020 61309020 C T SERPINB4 Missense_Mutation p.G109R 0.12 deleterious(0.02) benign(0.405) TCGA-CR-7397-01 19 12551822 12551822 C G CTD-3105H18.16 5'UTR 0.23 TCGA-CR-7397-01 19 22154658 22154658 C T ZNF208 Missense_Mutation p.E1060K 0.05 tolerated(0.76) benign(0.403) TCGA-CR-7397-01 19 23836193 23836193 G A ZNF675 Silent p.G514G 0.17 TCGA-CR-7397-01 19 39361610 39361610 G A RINL Silent p.H208H 0.12 TCGA-CR-7397-01 19 48607904 48607904 C T PLA2G4C Missense_Mutation p.M76I 0.08 deleterious(0.02) benign(0.406) TCGA-CR-7397-01 19 50548556 50548556 C G ZNF473 Missense_Mutation p.H286D 0.08 deleterious(0) benign(0.043) TCGA-CR-7397-01 1 103474049 103474049 G T COL11A1 Silent p.A551A 0.08 TCGA-CR-7397-01 1 200842880 200842880 C T GPR25 Missense_Mutation p.R239W 0.07 deleterious(0) probably_damaging(0.999) TCGA-CR-7397-01 1 244218372 244218372 C T ZBTB18 Silent p.Y432Y 0.08 TCGA-CR-7397-01 1 248263541 248263541 C A OR2L13 Silent p.I288I 0.12 TCGA-CR-7397-01 1 45799087 45799087 G A MUTYH Missense_Mutation p.R113W 0.09 tolerated(0.2) benign(0.004) TCGA-CR-7397-01 1 67195004 67195004 A G SGIP1 Silent p.R600R 0.07 TCGA-CR-7397-01 2 106497876 106497876 G A NCK2 Missense_Mutation p.D107N 0.13 tolerated(0.49) benign(0.298) TCGA-CR-7397-01 2 121729595 121729595 G A GLI2 Missense_Mutation p.E380K 0.12 deleterious(0) probably_damaging(0.991) TCGA-CR-7397-01 2 153000432 153000432 G A STAM2 Missense_Mutation p.R205W 0.11 deleterious(0) probably_damaging(0.927) TCGA-CR-7397-01 2 191235874 191235874 G T INPP1 Missense_Mutation p.D316Y 0.05 deleterious(0) probably_damaging(1) TCGA-CR-7397-01 2 220144591 220144591 A T DNAJB2 Silent p.R12R 0.20 TCGA-CR-7397-01 3 127983609 127983609 G A EEFSEC Silent p.E257E 0.11 TCGA-CR-7397-01 3 183368900 183368900 G A KLHL24 Silent p.L252L 0.11 TCGA-CR-7397-01 3 39116272 39116272 G C WDR48 Missense_Mutation p.R243T 0.21 deleterious(0.02) probably_damaging(0.987) TCGA-CR-7397-01 4 164272135 164272135 G A NPY5R Missense_Mutation p.S237N 0.23 tolerated(0.11) possibly_damaging(0.587) TCGA-CR-7397-01 4 44450256 44450256 C T KCTD8 Silent p.A95A 0.14 TCGA-CR-7397-01 5 137727716 137727716 C T KDM3B Silent p.L799L 0.12 TCGA-CR-7397-01 5 176018404 176018404 G A CDHR2 Splice_Site p.X1218_splice 0.16 TCGA-CR-7397-01 5 82817997 82817997 C G VCAN Missense_Mutation p.T1291R 0.13 deleterious(0) possibly_damaging(0.489) TCGA-CR-7397-01 6 139609822 139609822 G C TXLNB Missense_Mutation p.S72C 0.10 deleterious(0.03) probably_damaging(0.954) TCGA-CR-7397-01 6 31736952 31736952 G C VWA7 Nonsense_Mutation p.S449* 0.05 TCGA-CR-7397-01 7 122194724 122194724 G C CADPS2 Missense_Mutation p.S452C 0.11 tolerated(0.18) possibly_damaging(0.76) TCGA-CR-7397-01 7 131195709 131195709 G A PODXL Missense_Mutation p.T195M 0.07 tolerated(0.27) benign(0.002) TCGA-CR-7397-01 7 150553561 150553561 G A AOC1 Translation_Start_Site p.M1? 0.11 tolerated_low_confidence(0.36) benign(0.001) TCGA-CR-7397-01 7 4308450 4308450 G A SDK1 3'UTR 0.19 TCGA-CR-7397-01 7 53104281 53104281 C T POM121L12 3'UTR 0.07 TCGA-CR-7397-01 7 70236612 70236612 A G AUTS2 Silent p.Q604Q 0.07 TCGA-CR-7397-01 9 98220448 98220448 C A PTCH1 Silent p.G1005G 0.25 TCGA-CR-7397-01 X 119077227 119077227 C T NKAP Nonsense_Mutation p.W114* 0.17 TCGA-CR-7397-01 X 129629115 129629115 G A RP1-274L7.1 RNA 0.12 TCGA-CR-7397-01 X 63444272 63444272 G A ASB12 Silent p.A300A 0.12 TCGA-CR-7397-01 X 80377094 80377094 G A HMGN5 5'UTR 0.17 TCGA-CR-7398-01 10 100401623 100401623 T A HPSE2 Missense_Mutation p.Q360L 0.39 tolerated(0.05) benign(0.409) TCGA-CR-7398-01 10 100481443 100481443 C A HPSE2 Silent p.P309P 0.30 TCGA-CR-7398-01 10 107016579 107016579 C T SORCS3 Missense_Mutation p.P1114S 0.62 tolerated(0.06) probably_damaging(0.945) TCGA-CR-7398-01 10 108923992 108923992 G T SORCS1 Missense_Mutation p.S98Y 0.34 deleterious_low_confidence(0.01) benign(0.017) TCGA-CR-7398-01 10 119305325 119305325 C G EMX2 Missense_Mutation p.Q197E 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-CR-7398-01 10 129913444 129913444 C T MKI67 Missense_Mutation p.D410N 0.37 tolerated(1) benign(0) TCGA-CR-7398-01 10 131557583 131557583 G C MGMT Missense_Mutation p.G162A 0.37 deleterious(0) probably_damaging(0.993) TCGA-CR-7398-01 10 135106020 135106020 G A TUBGCP2 Silent p.I427I 0.29 TCGA-CR-7398-01 10 135440184 135440184 C A FRG2B Missense_Mutation p.Q21H 0.08 tolerated(0.09) benign(0.032) TCGA-CR-7398-01 10 15255068 15255068 G A FAM171A1 Missense_Mutation p.A840V 0.33 tolerated(0.4) benign(0.004) TCGA-CR-7398-01 10 16994277 16994277 G C CUBN Missense_Mutation p.P1656R 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-CR-7398-01 10 16996484 16996484 C A CUBN Missense_Mutation p.A1587S 0.39 tolerated(0.19) benign(0.004) TCGA-CR-7398-01 10 17165686 17165686 A T CUBN Silent p.T130T 0.54 TCGA-CR-7398-01 10 25886754 25886754 G T GPR158 Missense_Mutation p.M733I 0.34 deleterious(0) probably_damaging(0.937) TCGA-CR-7398-01 10 38407754 38407754 T G ZNF37A Missense_Mutation p.Y559D 0.36 tolerated_low_confidence(0.07) benign(0.023) TCGA-CR-7398-01 10 43679034 43679034 A T CSGALNACT2 3'UTR 0.40 TCGA-CR-7398-01 10 48388466 48388466 C A RBP3 Missense_Mutation p.E804D 0.39 tolerated(0.1) possibly_damaging(0.523) TCGA-CR-7398-01 10 50122273 50122273 A T LRRC18 5'UTR 0.45 TCGA-CR-7398-01 10 64944479 64944479 T A JMJD1C Missense_Mutation p.S2284C 0.37 tolerated(0.11) benign(0.007) TCGA-CR-7398-01 10 71392595 71392595 G T C10orf35 Missense_Mutation p.R49L 0.44 tolerated(0.63) benign(0.004) TCGA-CR-7398-01 10 93011162 93011162 C G PCGF5 Missense_Mutation p.R147G 0.31 tolerated(0.08) possibly_damaging(0.596) TCGA-CR-7398-01 10 93792 93792 C A TUBB8 Silent p.V180V 0.24 TCGA-CR-7398-01 11 101832914 101832914 G T KIAA1377 Missense_Mutation p.C383F 0.33 deleterious(0.04) benign(0.088) TCGA-CR-7398-01 11 105795455 105795455 C T GRIA4 Silent p.L603L 0.44 TCGA-CR-7398-01 11 113614600 113614600 T C ZW10 Missense_Mutation p.I479V 0.35 tolerated(0.07) benign(0.061) TCGA-CR-7398-01 11 114027108 114027108 C A ZBTB16 Silent p.R440R 0.26 TCGA-CR-7398-01 11 117093951 117093951 A C PCSK7 Missense_Mutation p.S376R 0.42 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 11 121032985 121032985 G T TECTA Missense_Mutation p.K1726N 0.34 tolerated(0.42) benign(0.057) TCGA-CR-7398-01 11 124413188 124413188 G C OR8B12 Silent p.R121R 0.32 TCGA-CR-7398-01 11 126343309 126343309 C T KIRREL3 Silent p.A162A 0.40 TCGA-CR-7398-01 11 128360449 128360449 T A ETS1 Silent p.P79P 0.45 TCGA-CR-7398-01 11 128628193 128628193 C T FLI1 Missense_Mutation p.R68W 0.32 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 11 15260557 15260557 G C INSC Missense_Mutation p.A491P 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 11 1629194 1629194 C A KRTAP5-3 Missense_Mutation p.C141F 0.39 deleterious(0) unknown(0) TCGA-CR-7398-01 11 1629195 1629195 A G KRTAP5-3 Missense_Mutation p.C141R 0.39 deleterious(0) unknown(0) TCGA-CR-7398-01 11 18231832 18231832 T A RP11-113D6.10 3'UTR 0.45 TCGA-CR-7398-01 11 20178181 20178181 G A DBX1 Missense_Mutation p.S243F 0.36 deleterious_low_confidence(0.03) benign(0.024) TCGA-CR-7398-01 11 26587419 26587419 G C MUC15 Missense_Mutation p.P23R 0.40 tolerated_low_confidence(0.35) possibly_damaging(0.904) TCGA-CR-7398-01 11 30928266 30928266 A G DCDC1 Missense_Mutation p.C1309R 0.40 tolerated(0.15) benign(0) TCGA-CR-7398-01 11 31086589 31086589 G T DCDC1 Missense_Mutation p.H804N 0.40 tolerated_low_confidence(0.38) possibly_damaging(0.542) TCGA-CR-7398-01 11 40137513 40137513 G T LRRC4C Missense_Mutation p.N110K 0.45 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 11 4621792 4621792 T C TRIM68 Missense_Mutation p.Y391C 0.34 tolerated(0.07) benign(0.102) TCGA-CR-7398-01 11 48346810 48346810 C A OR4C3 Silent p.L106L 0.13 TCGA-CR-7398-01 11 51411675 51411675 T A OR4A5 Missense_Mutation p.S241C 0.41 deleterious_low_confidence(0) benign(0.106) TCGA-CR-7398-01 11 55579555 55579555 T A OR5L1 Missense_Mutation p.L205M 0.32 deleterious(0.01) benign(0.436) TCGA-CR-7398-01 11 55927296 55927296 C A OR8K5 Missense_Mutation p.L166F 0.27 tolerated_low_confidence(0.09) probably_damaging(0.969) TCGA-CR-7398-01 11 55927362 55927362 C G OR8K5 Silent p.L144L 0.31 TCGA-CR-7398-01 11 56086244 56086244 C A OR8K3 Missense_Mutation p.F154L 0.41 deleterious_low_confidence(0.04) benign(0.059) TCGA-CR-7398-01 11 56511027 56511027 C A OR9G4 Missense_Mutation p.W87C 0.35 tolerated(1) benign(0.167) TCGA-CR-7398-01 11 5730671 5730671 G A TRIM22 Silent p.K430K 0.36 TCGA-CR-7398-01 11 58384258 58384258 G A ZFP91 Missense_Mutation p.R391Q 0.22 tolerated(0.15) probably_damaging(0.969) TCGA-CR-7398-01 11 58491896 58491896 G A GLYAT Missense_Mutation p.S25F 0.39 deleterious(0) probably_damaging(0.995) TCGA-CR-7398-01 11 5905604 5905604 T A OR52E4 Missense_Mutation p.W28R 0.40 deleterious(0) probably_damaging(0.937) TCGA-CR-7398-01 11 59622199 59622199 A G TCN1 Silent p.N349N 0.38 TCGA-CR-7398-01 11 60183525 60183525 T A MS4A14 Missense_Mutation p.S395T 0.50 tolerated(0.19) possibly_damaging(0.496) TCGA-CR-7398-01 11 62124564 62124564 C T ASRGL1 Missense_Mutation p.R147C 0.40 deleterious(0.02) possibly_damaging(0.849) TCGA-CR-7398-01 11 65637634 65637634 C T EFEMP2 Missense_Mutation p.E189K 0.43 tolerated(0.35) benign(0.064) TCGA-CR-7398-01 11 66407340 66407340 G A RBM4 Missense_Mutation p.R53H 0.30 tolerated(0.1) benign(0.022) TCGA-CR-7398-01 11 70033950 70033950 T A ANO1 Missense_Mutation p.F934Y 0.60 deleterious(0) benign(0.011) TCGA-CR-7398-01 11 7068026 7068026 G T NLRP14 Nonsense_Mutation p.E696* 0.37 TCGA-CR-7398-01 11 76870542 76870542 G C MYO7A Silent p.S351S 0.44 TCGA-CR-7398-01 11 92895879 92895879 C A SLC36A4 Missense_Mutation p.D344Y 0.47 deleterious(0) possibly_damaging(0.793) TCGA-CR-7398-01 12 11061579 11061579 A G TAS2R13 Missense_Mutation p.Y107H 0.70 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 12 13224192 13224192 T A KIAA1467 Silent p.G462G 0.26 TCGA-CR-7398-01 12 14996007 14996007 G T ART4 Missense_Mutation p.P14Q 0.59 deleterious_low_confidence(0.04) possibly_damaging(0.751) TCGA-CR-7398-01 12 18658284 18658284 G T PIK3C2G Missense_Mutation p.G1030V 0.55 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 12 26580957 26580957 C A ITPR2 Silent p.L2278L 0.22 TCGA-CR-7398-01 12 3939117 3939117 G T PARP11 Missense_Mutation p.T29K 0.37 deleterious(0) probably_damaging(0.992) TCGA-CR-7398-01 12 48738456 48738456 T C ZNF641 Missense_Mutation p.E163G 0.83 tolerated(0.07) benign(0) TCGA-CR-7398-01 12 53683319 53683319 G T ESPL1 Missense_Mutation p.G1685V 0.78 deleterious(0.02) benign(0.094) TCGA-CR-7398-01 12 5604005 5604005 G T NTF3 Missense_Mutation p.D222Y 0.67 deleterious(0) probably_damaging(0.998) TCGA-CR-7398-01 12 60168919 60168919 G T SLC16A7 Silent p.S281S 0.83 TCGA-CR-7398-01 12 64472740 64472740 T C SRGAP1 Silent p.D389D 0.77 TCGA-CR-7398-01 12 88588735 88588735 A T TMTC3 Missense_Mutation p.N685I 0.75 tolerated(0.18) benign(0) TCGA-CR-7398-01 13 102047697 102047697 C A NALCN Missense_Mutation p.R43L 0.78 deleterious(0.01) probably_damaging(0.935) TCGA-CR-7398-01 13 48881512 48881512 G A RB1 Nonsense_Mutation p.W78* 0.77 TCGA-CR-7398-01 13 49957001 49957001 C A CAB39L Nonsense_Mutation p.E16* 0.74 TCGA-CR-7398-01 13 52542619 52542619 C T ATP7B Missense_Mutation p.M556I 0.81 tolerated(0.84) benign(0.004) TCGA-CR-7398-01 13 70281880 70281880 C A KLHL1 Missense_Mutation p.M688I 0.84 tolerated(0.59) benign(0.004) TCGA-CR-7398-01 13 99540717 99540717 A T DOCK9 Missense_Mutation p.V625E 0.75 tolerated(0.18) probably_damaging(0.999) TCGA-CR-7398-01 14 100119179 100119179 G A HHIPL1 Missense_Mutation p.E292K 0.55 tolerated(0.91) benign(0.005) TCGA-CR-7398-01 14 106406028 106406028 G A IGHV6-1 Missense_Mutation p.P10L 0.58 tolerated(0.8) benign(0.002) TCGA-CR-7398-01 14 19377887 19377887 C G OR11H12 Silent p.V98V 0.47 TCGA-CR-7398-01 14 20389063 20389063 C T OR4K5 Nonsense_Mutation p.Q100* 0.63 TCGA-CR-7398-01 14 23889278 23889278 C T MYH7 Missense_Mutation p.E1168K 0.62 deleterious(0.01) probably_damaging(0.991) TCGA-CR-7398-01 14 24785367 24785367 G T LTB4R Silent p.P170P 0.62 TCGA-CR-7398-01 14 30046533 30046533 G T PRKD1 Missense_Mutation p.L884M 0.73 tolerated(0.06) possibly_damaging(0.77) TCGA-CR-7398-01 14 36217955 36217955 G T RALGAPA1 Missense_Mutation p.P363T 0.50 tolerated(0.14) possibly_damaging(0.823) TCGA-CR-7398-01 14 42355810 42355810 C A LRFN5 Intron 0.46 TCGA-CR-7398-01 14 47342647 47342647 C - MDGA2 Frame_Shift_Del p.G914Dfs*4 0.36 TCGA-CR-7398-01 14 67389587 67389587 G C GPHN Missense_Mutation p.D221H 0.56 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CR-7398-01 14 72054795 72054795 C T SIPA1L1 Missense_Mutation p.P69L 0.70 deleterious(0) probably_damaging(0.997) TCGA-CR-7398-01 14 74060510 74060510 C T ACOT4 Silent p.L188L 0.74 TCGA-CR-7398-01 14 94933495 94933495 C A SERPINA9 Missense_Mutation p.A303S 0.47 tolerated(0.15) benign(0.006) TCGA-CR-7398-01 15 22368621 22368621 G T OR4M2 Missense_Mutation p.G16C 0.24 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 15 23931741 23931741 G C NDN Missense_Mutation p.S208R 0.40 deleterious(0) possibly_damaging(0.892) TCGA-CR-7398-01 15 25322231 25322231 G T SNORD116-12 RNA 0.35 TCGA-CR-7398-01 15 25463671 25463671 C A SNORD115-27 5'Flank 0.32 TCGA-CR-7398-01 15 31214472 31214473 AG - FAN1 Frame_Shift_Del p.R697Nfs*5 0.34 TCGA-CR-7398-01 15 40494809 40494809 C T BUB1B Nonsense_Mutation p.R550* 0.38 TCGA-CR-7398-01 15 42159161 42159161 G A SPTBN5 Missense_Mutation p.T2159I 0.55 benign(0.081) TCGA-CR-7398-01 15 45402630 45402630 T A DUOX2 Missense_Mutation p.M346L 0.49 tolerated(0.25) benign(0.359) TCGA-CR-7398-01 15 49420932 49420946 ACATCAGCTACATCT - COPS2 In_Frame_Del p.I387_V392delinsM 0.10 TCGA-CR-7398-01 15 54586184 54586184 G T UNC13C Nonsense_Mutation p.E1304* 0.41 TCGA-CR-7398-01 15 56130375 56130375 G C NEDD4 Missense_Mutation p.H1058D 0.14 deleterious(0.02) probably_damaging(0.923) TCGA-CR-7398-01 15 79750339 79750339 G T KIAA1024 Missense_Mutation p.R617L 0.37 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 15 86123011 86123011 C T AKAP13 Missense_Mutation p.S571L 0.40 tolerated_low_confidence(0.09) benign(0.006) TCGA-CR-7398-01 16 20386177 20386177 G C PDILT Missense_Mutation p.H216Q 0.56 tolerated(0.35) probably_damaging(0.909) TCGA-CR-7398-01 16 21654459 21654459 C A IGSF6 Missense_Mutation p.R201L 0.52 deleterious(0.01) possibly_damaging(0.843) TCGA-CR-7398-01 16 21742247 21742247 C T OTOA Missense_Mutation p.T766I 0.44 tolerated(0.14) benign(0.007) TCGA-CR-7398-01 16 23706706 23706706 G C ERN2 Missense_Mutation p.Q587E 0.64 tolerated(0.38) benign(0.009) TCGA-CR-7398-01 16 25238439 25238439 C T AQP8 Missense_Mutation p.A218V 0.26 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 16 29825272 29825272 C G PRRT2 Intron 0.22 TCGA-CR-7398-01 16 3021084 3021084 G T PAQR4 Intron 0.63 TCGA-CR-7398-01 16 30566697 30566697 C T ZNF764 Missense_Mutation p.G349S 0.32 tolerated(0.05) probably_damaging(0.966) TCGA-CR-7398-01 16 30749357 30749357 G T SRCAP Nonsense_Mutation p.E2666* 0.32 TCGA-CR-7398-01 16 71481941 71481941 G A ZNF23 3'UTR 0.50 TCGA-CR-7398-01 16 75675607 75675607 C A KARS Missense_Mutation p.R54L 0.52 deleterious(0.02) possibly_damaging(0.601) TCGA-CR-7398-01 16 81069786 81069786 A T ATMIN Missense_Mutation p.H104L 0.68 deleterious(0) possibly_damaging(0.758) TCGA-CR-7398-01 16 84793532 84793532 T G USP10 Missense_Mutation p.V477G 0.60 tolerated(0.05) possibly_damaging(0.799) TCGA-CR-7398-01 16 9857768 9857768 G A GRIN2A Silent p.S1211S 0.55 TCGA-CR-7398-01 17 10302868 10302868 G C MYH8 Missense_Mutation p.T1285R 0.72 deleterious(0) possibly_damaging(0.831) TCGA-CR-7398-01 17 10395801 10395801 C T MYH1 Missense_Mutation p.E1918K 0.68 deleterious(0.01) benign(0.077) TCGA-CR-7398-01 17 20224898 20224898 C T AC004702.2 Intron 0.52 TCGA-CR-7398-01 17 33486400 33486400 A G UNC45B Missense_Mutation p.K272R 0.35 tolerated(0.05) possibly_damaging(0.735) TCGA-CR-7398-01 17 42274669 42274669 C A ATXN7L3 Missense_Mutation p.A95S 0.46 deleterious(0.01) probably_damaging(0.981) TCGA-CR-7398-01 17 47886541 47886541 G A KAT7 Missense_Mutation p.D242N 0.25 tolerated(0.14) benign(0) TCGA-CR-7398-01 17 49074019 49074019 C T SPAG9 Silent p.K625K 0.27 TCGA-CR-7398-01 17 61949685 61949685 T A CSH2 Splice_Site p.X153_splice 0.38 TCGA-CR-7398-01 17 6377866 6377866 G T PITPNM3 Missense_Mutation p.L382I 0.75 tolerated(0.14) benign(0.003) TCGA-CR-7398-01 17 66511665 66511665 G T PRKAR1A Missense_Mutation p.R42L 0.47 deleterious(0) possibly_damaging(0.644) TCGA-CR-7398-01 17 66914238 66914238 C T ABCA8 Missense_Mutation p.R626H 0.38 tolerated(0.25) benign(0.117) TCGA-CR-7398-01 17 72348368 72348368 G T KIF19 Silent p.L623L 0.20 TCGA-CR-7398-01 17 75085513 75085513 G A SEC14L1 Intron 0.41 TCGA-CR-7398-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.65 deleterious(0.01) probably_damaging(0.914) TCGA-CR-7398-01 17 77708950 77708950 A G ENPP7 Missense_Mutation p.T170A 0.41 tolerated(0.17) benign(0.029) TCGA-CR-7398-01 17 8044497 8044497 G A PER1 Silent p.A1254A 0.68 TCGA-CR-7398-01 17 8168408 8168408 A T PFAS Missense_Mutation p.T749S 0.77 tolerated(0.21) possibly_damaging(0.52) TCGA-CR-7398-01 18 13681843 13681843 T A FAM210A Silent p.P78P 0.35 TCGA-CR-7398-01 18 14543227 14543227 T A POTEC 5'Flank 0.12 TCGA-CR-7398-01 18 25591835 25591835 C A CDH2 Missense_Mutation p.G174V 0.19 deleterious(0) probably_damaging(0.991) TCGA-CR-7398-01 18 2770009 2770009 G C SMCHD1 Missense_Mutation p.M1623I 0.27 tolerated(0.07) benign(0.062) TCGA-CR-7398-01 18 3129467 3129467 C A MYOM1 Nonsense_Mutation p.G853* 0.43 TCGA-CR-7398-01 18 32706962 32706962 C T MAPRE2 Missense_Mutation p.P221S 0.67 tolerated(0.1) probably_damaging(0.992) TCGA-CR-7398-01 18 43795987 43795987 G T C18orf25 Silent p.A47A 0.78 TCGA-CR-7398-01 18 44560256 44560256 T C TCEB3B Silent p.S460S 0.58 TCGA-CR-7398-01 18 50866235 50866235 C A DCC Missense_Mutation p.R773S 0.59 tolerated(0.08) probably_damaging(0.913) TCGA-CR-7398-01 18 5415942 5415942 A T EPB41L3 Missense_Mutation p.F648I 0.38 tolerated(0.27) possibly_damaging(0.833) TCGA-CR-7398-01 18 55020077 55020077 G T ST8SIA3 5'UTR 0.53 TCGA-CR-7398-01 18 56415142 56415142 G A MALT1 3'UTR 0.22 TCGA-CR-7398-01 18 77227673 77227673 G A NFATC1 Intron 0.23 TCGA-CR-7398-01 19 12958435 12958435 C T MAST1 Silent p.R166R 0.38 TCGA-CR-7398-01 19 14163009 14163009 C A IL27RA Silent p.T606T 0.53 TCGA-CR-7398-01 19 16275696 16275696 C A CIB3 Silent p.A125A 0.23 TCGA-CR-7398-01 19 17679367 17679367 G T COLGALT1 Missense_Mutation p.R225L 0.38 deleterious(0) benign(0.165) TCGA-CR-7398-01 19 17766748 17766748 G T UNC13A Missense_Mutation p.D409E 0.21 tolerated_low_confidence(1) benign(0) TCGA-CR-7398-01 19 22941167 22941167 C - ZNF99 Frame_Shift_Del p.G515Afs*15 0.22 TCGA-CR-7398-01 19 33333131 33333131 C A SLC7A9 Silent p.T389T 0.28 TCGA-CR-7398-01 19 40421289 40421289 G A FCGBP Missense_Mutation p.R878W 0.29 probably_damaging(0.997) TCGA-CR-7398-01 19 47259642 47259642 G A FKRP Missense_Mutation p.R312H 0.60 deleterious(0) probably_damaging(0.996) TCGA-CR-7398-01 19 50245223 50245223 C T TSKS Silent p.L472L 0.40 TCGA-CR-7398-01 19 51503433 51503433 G A KLK8 Silent p.I149I 0.46 TCGA-CR-7398-01 19 51507039 51507039 C T KLK9 Missense_Mutation p.C175Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 19 53473080 53473080 T C ZNF702P RNA 0.26 TCGA-CR-7398-01 19 55740209 55740209 G A TMEM86B 5'UTR 0.31 TCGA-CR-7398-01 19 57335999 57335999 C T PEG3 Missense_Mutation p.A9T 0.22 tolerated(0.28) benign(0.001) TCGA-CR-7398-01 19 57647112 57647112 T C ZIM3 Missense_Mutation p.H198R 0.48 tolerated(0.68) benign(0) TCGA-CR-7398-01 19 58619280 58619280 C G ZSCAN18 Intron 0.70 TCGA-CR-7398-01 19 813188 813188 G A LPPR3 Silent p.A541A 0.38 TCGA-CR-7398-01 19 9064360 9064360 C T MUC16 Missense_Mutation p.V7696M 0.27 unknown(0) TCGA-CR-7398-01 1 103440441 103440441 T A COL11A1 Splice_Site p.X919_splice 0.44 TCGA-CR-7398-01 1 103444277 103444277 G T COL11A1 Missense_Mutation p.P914H 0.35 unknown(0) TCGA-CR-7398-01 1 103461595 103461595 G A COL11A1 Missense_Mutation p.P749S 0.36 unknown(0) TCGA-CR-7398-01 1 104160042 104160042 C A AMY2A 5'UTR 0.22 TCGA-CR-7398-01 1 104160135 104160135 C T AMY2A Missense_Mutation p.R25W 0.32 deleterious(0) probably_damaging(0.968) TCGA-CR-7398-01 1 111216927 111216927 T C KCNA3 Missense_Mutation p.I169V 0.40 deleterious(0.01) benign(0.292) TCGA-CR-7398-01 1 12853591 12853591 C A PRAMEF1 Missense_Mutation p.T72K 0.33 tolerated(0.96) benign(0.171) TCGA-CR-7398-01 1 12919600 12919600 G C PRAMEF2 Missense_Mutation p.A114P 0.38 tolerated(0.06) benign(0.012) TCGA-CR-7398-01 1 12939432 12939432 G C PRAMEF4 Missense_Mutation p.T457S 0.41 tolerated(0.36) probably_damaging(0.998) TCGA-CR-7398-01 1 144855862 144855862 G C PDE4DIP Missense_Mutation p.H2231D 0.08 deleterious(0.03) benign(0.096) TCGA-CR-7398-01 1 149916498 149916498 C T OTUD7B Missense_Mutation p.S597N 0.13 tolerated(1) benign(0.003) TCGA-CR-7398-01 1 152282723 152282723 C T FLG Missense_Mutation p.E1547K 0.41 benign(0.292) TCGA-CR-7398-01 1 152659536 152659536 C T LCE2B Silent p.L73L 0.46 TCGA-CR-7398-01 1 158595968 158595968 G T SPTA1 Missense_Mutation p.L1960I 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-CR-7398-01 1 158655028 158655028 C A SPTA1 Missense_Mutation p.R45M 0.44 deleterious(0) probably_damaging(0.997) TCGA-CR-7398-01 1 158669657 158669657 G A OR6K2 Silent p.R262R 0.31 TCGA-CR-7398-01 1 160097392 160097392 C T ATP1A2 Missense_Mutation p.R267C 0.38 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 1 166927159 166927159 G T ILDR2 Silent p.R76R 0.37 TCGA-CR-7398-01 1 169699747 169699747 T C SELE Missense_Mutation p.T181A 0.41 tolerated(0.2) benign(0.027) TCGA-CR-7398-01 1 176738746 176738746 G A PAPPA2 Missense_Mutation p.E1443K 0.23 tolerated(0.14) benign(0.007) TCGA-CR-7398-01 1 182551297 182551297 G T RNASEL Missense_Mutation p.P555T 0.30 deleterious(0.01) possibly_damaging(0.743) TCGA-CR-7398-01 1 212180752 212180752 G A INTS7 Missense_Mutation p.P199L 0.17 tolerated(0.11) probably_damaging(0.918) TCGA-CR-7398-01 1 216040469 216040469 C G USH2A Missense_Mutation p.G2909R 0.32 probably_damaging(0.998) TCGA-CR-7398-01 1 231047215 231047215 C T TTC13 Splice_Site p.X770_splice 0.36 TCGA-CR-7398-01 1 237942010 237942010 G T RYR2 Silent p.L3940L 0.38 TCGA-CR-7398-01 1 247599293 247599293 A G NLRP3 Silent p.T840T 0.31 TCGA-CR-7398-01 1 248004498 248004499 - A OR11L1 Frame_Shift_Ins p.R234Lfs*36 0.19 TCGA-CR-7398-01 1 248512790 248512790 C G OR14C36 Silent p.T238T 0.42 TCGA-CR-7398-01 1 29185538 29185538 C G OPRD1 Missense_Mutation p.S100R 0.32 deleterious(0.03) possibly_damaging(0.778) TCGA-CR-7398-01 1 34329945 34329945 C A HMGB4 Silent p.S51S 0.34 TCGA-CR-7398-01 1 44433423 44433423 T C IPO13 3'UTR 0.25 TCGA-CR-7398-01 1 45506091 45506091 G A ZSWIM5 Silent p.L577L 0.50 TCGA-CR-7398-01 1 57349196 57349196 G T C8A Missense_Mutation p.A233S 0.23 tolerated(0.77) benign(0.02) TCGA-CR-7398-01 1 68512915 68512915 G A DIRAS3 Silent p.A22A 0.40 TCGA-CR-7398-01 1 71478100 71478100 T C PTGER3 Missense_Mutation p.Q322R 0.44 tolerated(0.31) benign(0.288) TCGA-CR-7398-01 1 76253592 76253592 A G RABGGTB Intron 0.33 TCGA-CR-7398-01 1 77752660 77752660 A - AK5 Frame_Shift_Del p.D33Ifs*3 0.31 TCGA-CR-7398-01 1 79403499 79403499 C A ELTD1 Silent p.T251T 0.31 TCGA-CR-7398-01 1 84668432 84668432 C T PRKACB Missense_Mutation p.P284S 0.43 tolerated(0.06) possibly_damaging(0.566) TCGA-CR-7398-01 1 94485286 94485286 G A ABCA4 Missense_Mutation p.A1683V 0.28 deleterious(0) probably_damaging(0.933) TCGA-CR-7398-01 20 2577848 2577848 C T TMC2 Silent p.F376F 0.35 TCGA-CR-7398-01 20 3210334 3210334 G A SLC4A11 Silent p.A569A 0.47 TCGA-CR-7398-01 20 61594696 61594696 C T SLC17A9 Missense_Mutation p.R234W 0.49 tolerated(0.09) benign(0.013) TCGA-CR-7398-01 21 10910382 10910382 T C TPTE Silent p.T458T 0.08 TCGA-CR-7398-01 21 10969098 10969098 G T TPTE Silent p.A50A 0.14 TCGA-CR-7398-01 21 11029643 11029643 A - BAGE2 RNA 0.21 TCGA-CR-7398-01 21 31655254 31655254 C T KRTAP24-1 5'UTR 0.44 TCGA-CR-7398-01 21 31691518 31691518 A G KRTAP26-1 3'UTR 0.38 TCGA-CR-7398-01 21 38593591 38593591 C A DSCR3 3'Flank 0.33 TCGA-CR-7398-01 21 45732884 45732884 C T PFKL Missense_Mutation p.R151W 0.31 deleterious(0) possibly_damaging(0.809) TCGA-CR-7398-01 21 45978296 45978296 C T KRTAP10-3 Silent p.V101V 0.36 TCGA-CR-7398-01 21 46912603 46912603 C A COL18A1 Silent p.G910G 0.35 TCGA-CR-7398-01 21 47556338 47556338 C G FTCD 3'UTR 0.25 TCGA-CR-7398-01 22 25119105 25119105 C A PIWIL3 Missense_Mutation p.R792S 0.76 deleterious(0) probably_damaging(0.954) TCGA-CR-7398-01 22 30688801 30688803 CGC - TBC1D10A In_Frame_Del p.R370_E371delinsQ 0.71 TCGA-CR-7398-01 22 39910115 39910115 C T MIEF1 Silent p.A393A 0.61 TCGA-CR-7398-01 2 105858978 105858978 G A GPR45 Silent p.T221T 0.33 TCGA-CR-7398-01 2 112754924 112754924 C T MERTK Missense_Mutation p.S492L 0.36 deleterious(0.03) probably_damaging(0.941) TCGA-CR-7398-01 2 114399746 114399746 C A RABL2A 3'UTR 0.40 TCGA-CR-7398-01 2 116534814 116534814 C A DPP10 Missense_Mutation p.L422M 0.33 deleterious(0.01) probably_damaging(0.945) TCGA-CR-7398-01 2 118582663 118582663 G T DDX18 Missense_Mutation p.V452F 0.40 deleterious(0) probably_damaging(0.989) TCGA-CR-7398-01 2 124783205 124783205 G C CNTNAP5 5'UTR 0.34 TCGA-CR-7398-01 2 135739048 135739048 A G MAP3K19 Missense_Mutation p.V1088A 0.38 deleterious(0) probably_damaging(0.98) TCGA-CR-7398-01 2 141816540 141816540 G T LRP1B Missense_Mutation p.N440K 0.27 benign(0.403) TCGA-CR-7398-01 2 15679480 15679480 A T NBAS Missense_Mutation p.V127D 0.09 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 2 158272457 158272457 C A CYTIP Missense_Mutation p.R271M 0.32 tolerated(0.11) possibly_damaging(0.695) TCGA-CR-7398-01 2 162761344 162761344 G T SLC4A10 Missense_Mutation p.G559V 0.44 deleterious(0) possibly_damaging(0.661) TCGA-CR-7398-01 2 163292054 163292054 G T KCNH7 Silent p.R536R 0.41 TCGA-CR-7398-01 2 165947639 165947639 G C SCN3A Missense_Mutation p.S1675C 0.40 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 2 168106105 168106105 C A XIRP2 Missense_Mutation p.Q2735K 0.35 possibly_damaging(0.779) TCGA-CR-7398-01 2 170055350 170055350 A G LRP2 Missense_Mutation p.C2842R 0.30 probably_damaging(0.995) TCGA-CR-7398-01 2 170058313 170058313 G T LRP2 Silent p.R2759R 0.30 TCGA-CR-7398-01 2 179614488 179614488 G T TTN Intron 0.31 TCGA-CR-7398-01 2 179659867 179659867 G T TTN Missense_Mutation p.P343T 0.38 TCGA-CR-7398-01 2 182783380 182783380 C G SSFA2 Nonsense_Mutation p.S948* 0.38 TCGA-CR-7398-01 2 183818048 183818048 C A NCKAP1 Missense_Mutation p.G728V 0.36 tolerated(0.11) benign(0.408) TCGA-CR-7398-01 2 189909940 189909940 C A COL5A2 Nonsense_Mutation p.G1110* 0.41 TCGA-CR-7398-01 2 192701281 192701281 C G SDPR Missense_Mutation p.E216Q 0.36 tolerated(0.08) benign(0.068) TCGA-CR-7398-01 2 201476122 201476122 T C AOX1 Missense_Mutation p.I390T 0.41 deleterious(0.01) possibly_damaging(0.794) TCGA-CR-7398-01 2 201507394 201507394 G A AOX1 Missense_Mutation p.R906Q 0.37 tolerated(0.24) benign(0.004) TCGA-CR-7398-01 2 209308142 209308142 C - PTH2R Frame_Shift_Del p.S193Rfs*8 0.34 TCGA-CR-7398-01 2 210545497 210545497 C T MAP2 Missense_Mutation p.P134S 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-7398-01 2 211057583 211057583 C A ACADL Missense_Mutation p.D382Y 0.24 deleterious(0) possibly_damaging(0.545) TCGA-CR-7398-01 2 213403322 213403322 G T ERBB4 5'UTR 0.32 TCGA-CR-7398-01 2 216248799 216248799 G T FN1 Missense_Mutation p.T1613N 0.39 tolerated(0.36) probably_damaging(0.999) TCGA-CR-7398-01 2 216271041 216271041 G - FN1 Frame_Shift_Del p.P969Lfs*12 0.26 TCGA-CR-7398-01 2 219677281 219677281 G T CYP27A1 Missense_Mutation p.C218F 0.43 deleterious(0.03) benign(0.14) TCGA-CR-7398-01 2 228884716 228884716 C G SPHKAP Missense_Mutation p.R285P 0.35 tolerated(0.23) benign(0.191) TCGA-CR-7398-01 2 237489774 237489774 C T ACKR3 Silent p.A222A 0.50 TCGA-CR-7398-01 2 238449173 238449173 G T MLPH Silent p.P429P 0.59 TCGA-CR-7398-01 2 239344391 239344391 C T ASB1 Silent p.L77L 0.36 TCGA-CR-7398-01 2 240029767 240029767 C T HDAC4 Silent p.T692T 0.38 TCGA-CR-7398-01 2 241534551 241534551 C A CAPN10 Silent p.R370R 0.45 TCGA-CR-7398-01 2 241702653 241702653 C A KIF1A Missense_Mutation p.D627Y 0.29 deleterious(0) probably_damaging(0.959) TCGA-CR-7398-01 2 242135326 242135326 C T ANO7 Intron 0.38 TCGA-CR-7398-01 2 26852280 26852280 G T CIB4 Silent p.R62R 0.29 TCGA-CR-7398-01 2 27322328 27322328 G T KHK Missense_Mutation p.A232S 0.20 deleterious(0) possibly_damaging(0.879) TCGA-CR-7398-01 2 27596131 27596131 C A SNX17 Missense_Mutation p.L92I 0.19 tolerated(0.59) benign(0.24) TCGA-CR-7398-01 2 27898488 27898488 G A SLC4A1AP Missense_Mutation p.E479K 0.25 deleterious(0) possibly_damaging(0.703) TCGA-CR-7398-01 2 48873734 48873734 A G STON1-GTF2A1L Silent p.P881P 0.52 TCGA-CR-7398-01 2 70527991 70527991 C T FAM136A Missense_Mutation p.S70N 0.29 tolerated(0.49) benign(0.003) TCGA-CR-7398-01 2 71909661 71909661 C A DYSF Missense_Mutation p.R2059S 0.24 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 2 74452068 74452068 C A SLC4A5 Missense_Mutation p.D1065Y 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-CR-7398-01 2 75745218 75745218 G T EVA1A Missense_Mutation p.L17I 0.54 tolerated(0.12) benign(0.009) TCGA-CR-7398-01 2 80846291 80846291 A T CTNNA2 Intron 0.60 TCGA-CR-7398-01 2 85876161 85876161 G T USP39 3'UTR 0.25 TCGA-CR-7398-01 2 90249169 90249169 C A IGKV1D-43 Missense_Mutation p.T42N 0.40 deleterious(0.01) benign(0.341) TCGA-CR-7398-01 3 107938307 107938307 C A IFT57 Missense_Mutation p.D109Y 0.66 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 3 12225013 12225013 A G SYN2 RNA 0.78 TCGA-CR-7398-01 3 157146252 157146252 T C VEPH1 Silent p.L185L 0.79 TCGA-CR-7398-01 3 164704993 164704993 G A SI Silent p.L1710L 0.77 TCGA-CR-7398-01 3 164741485 164741485 G T SI Nonsense_Mutation p.S991* 0.39 TCGA-CR-7398-01 3 164766984 164766984 A G SI Missense_Mutation p.V549A 0.34 tolerated(0.66) benign(0.046) TCGA-CR-7398-01 3 185636179 185636179 C A TRA2B Missense_Mutation p.R277L 0.28 tolerated_low_confidence(0.13) unknown(0) TCGA-CR-7398-01 3 186450367 186450367 G T KNG1 Silent p.L278L 0.08 TCGA-CR-7398-01 3 190936696 190936696 G A OSTN Missense_Mutation p.G88E 0.49 deleterious(0) probably_damaging(0.963) TCGA-CR-7398-01 3 39229740 39229740 C A XIRP1 Silent p.V399V 0.51 TCGA-CR-7398-01 3 42265263 42265263 C T TRAK1 3'UTR 0.56 TCGA-CR-7398-01 3 52829637 52829637 G T ITIH3 Missense_Mutation p.G38W 0.35 deleterious(0.02) possibly_damaging(0.447) TCGA-CR-7398-01 3 58817503 58817503 T C C3orf67 Missense_Mutation p.H444R 0.68 deleterious(0.04) possibly_damaging(0.733) TCGA-CR-7398-01 4 153247288 153247288 C A FBXW7 Missense_Mutation p.R505L 0.56 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 4 155161859 155161859 G T DCHS2 Missense_Mutation p.Q1942K 0.50 tolerated(0.08) benign(0.217) TCGA-CR-7398-01 4 160273853 160273853 C T RAPGEF2 Silent p.P1133P 0.66 TCGA-CR-7398-01 4 162841698 162841698 A T FSTL5 Nonsense_Mutation p.C89* 0.72 TCGA-CR-7398-01 4 175158751 175160144 4:175158751-175160144 - FBXO8 large deletion p.X258_splice 0.46 TCGA-CR-7398-01 4 175750057 175750057 G T GLRA3 5'UTR 0.67 TCGA-CR-7398-01 4 187557372 187557372 A - FAT1 Frame_Shift_Del p.N1330Kfs*38 0.38 TCGA-CR-7398-01 4 46252554 46252554 G C GABRA2 Missense_Mutation p.P376R 0.62 deleterious(0.04) possibly_damaging(0.869) TCGA-CR-7398-01 4 53232 53232 G T ZNF595 5'UTR 0.38 TCGA-CR-7398-01 4 5458560 5458560 G A STK32B Silent p.T231T 0.62 TCGA-CR-7398-01 4 70513215 70513215 C T UGT2A1 Missense_Mutation p.V50M 0.40 deleterious(0.01) probably_damaging(1) TCGA-CR-7398-01 4 71068636 71068636 T C ODAM Splice_Site p.X270_splice 0.56 TCGA-CR-7398-01 4 71232484 71232484 C A SMR3A Missense_Mutation p.P60T 0.16 deleterious_low_confidence(0) unknown(0) TCGA-CR-7398-01 4 77660612 77660612 A G SHROOM3 Missense_Mutation p.E429G 0.31 deleterious(0) probably_damaging(0.997) TCGA-CR-7398-01 4 96762121 96762121 G - PDHA2 Frame_Shift_Del p.G274Efs*6 0.40 TCGA-CR-7398-01 4 99337959 99337959 A T RAP1GDS1 Missense_Mutation p.Q277L 0.68 deleterious(0.04) benign(0.023) TCGA-CR-7398-01 5 11082811 11082811 T C CTNND2 Missense_Mutation p.I929V 0.56 deleterious(0) probably_damaging(0.961) TCGA-CR-7398-01 5 112175215 112175215 A G APC Silent p.K1308K 0.83 TCGA-CR-7398-01 5 129037215 129037215 A T ADAMTS19 Missense_Mutation p.K1024M 0.54 deleterious(0) possibly_damaging(0.718) TCGA-CR-7398-01 5 140176493 140176493 C T PCDHA2 Silent p.L648L 0.75 TCGA-CR-7398-01 5 140788253 140788253 A T PCDHGB6 Missense_Mutation p.I162L 0.65 tolerated(0.16) benign(0.285) TCGA-CR-7398-01 5 169461490 169461490 G A DOCK2 Silent p.L1185L 0.62 TCGA-CR-7398-01 5 176675268 176675269 - A NSD1 Frame_Shift_Ins p.M1531Nfs*4 0.50 TCGA-CR-7398-01 5 26903843 26903843 G A CDH9 Missense_Mutation p.A301V 0.32 deleterious(0) benign(0.302) TCGA-CR-7398-01 5 33937868 33937868 C A RXFP3 Silent p.P341P 0.33 TCGA-CR-7398-01 5 35654677 35654677 C A SPEF2 Missense_Mutation p.T276K 0.33 tolerated(0.13) benign(0.262) TCGA-CR-7398-01 5 35727888 35727888 C A SPEF2 Nonsense_Mutation p.S1009* 0.60 TCGA-CR-7398-01 5 41939628 41939628 A G FBXO4 Silent p.L328L 0.27 TCGA-CR-7398-01 5 58287799 58287799 T A PDE4D Missense_Mutation p.T350S 0.88 tolerated_low_confidence(0.12) benign(0.101) TCGA-CR-7398-01 5 79498804 79498804 G C SERINC5 Silent p.S32S 0.58 TCGA-CR-7398-01 5 89933676 89933676 A T GPR98 Missense_Mutation p.L717F 0.60 possibly_damaging(0.86) TCGA-CR-7398-01 6 118802981 118802981 T A CEP85L Missense_Mutation p.Q572L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 6 128385930 128385930 T A PTPRK Missense_Mutation p.T723S 0.30 deleterious(0) benign(0.21) TCGA-CR-7398-01 6 129419489 129419489 T C LAMA2 Missense_Mutation p.S190P 0.41 deleterious(0) probably_damaging(0.958) TCGA-CR-7398-01 6 132203596 132203596 G C ENPP1 Missense_Mutation p.G738R 0.39 deleterious(0) probably_damaging(0.981) TCGA-CR-7398-01 6 136597402 136597402 T A BCLAF1 Nonsense_Mutation p.K421* 0.29 TCGA-CR-7398-01 6 142487415 142487415 G A VTA1 Missense_Mutation p.E55K 0.37 tolerated(0.08) probably_damaging(0.99) TCGA-CR-7398-01 6 144507960 144507960 G T STX11 Nonsense_Mutation p.G66* 0.40 TCGA-CR-7398-01 6 146755774 146755774 C T GRM1 Missense_Mutation p.P1143S 0.47 deleterious_low_confidence(0.03) benign(0.101) TCGA-CR-7398-01 6 159677661 159677661 G T FNDC1 Silent p.T1724T 0.41 TCGA-CR-7398-01 6 160328115 160328115 C - MAS1 Frame_Shift_Del p.P44Qfs*18 0.28 TCGA-CR-7398-01 6 26157302 26157302 A G HIST1H1E 3'UTR 0.64 TCGA-CR-7398-01 6 29274874 29274874 C G OR14J1 Silent p.P136P 0.30 TCGA-CR-7398-01 6 29408338 29408338 T A OR10C1 Silent p.P182P 0.26 TCGA-CR-7398-01 6 30297214 30297214 C T TRIM39 Silent p.V40V 0.56 TCGA-CR-7398-01 6 30627269 30627269 T A DHX16 Missense_Mutation p.T663S 0.56 deleterious(0) unknown(0) TCGA-CR-7398-01 6 31477636 31477636 C G MICB Missense_Mutation p.Q368E 0.55 deleterious(0) possibly_damaging(0.878) TCGA-CR-7398-01 6 31743183 31743183 C T VWA7 Nonsense_Mutation p.W179* 0.61 TCGA-CR-7398-01 6 38851748 38851748 C A DNAH8 Missense_Mutation p.P2528T 0.35 probably_damaging(1) TCGA-CR-7398-01 6 38919096 38919096 C A DNAH8 Missense_Mutation p.S3867Y 0.38 probably_damaging(0.992) TCGA-CR-7398-01 6 40359677 40359677 C A LRFN2 3'UTR 0.44 TCGA-CR-7398-01 6 44219990 44219990 A T HSP90AB1 Nonsense_Mutation p.K573* 0.35 TCGA-CR-7398-01 6 46108938 46108938 C T ENPP4 Silent p.L326L 0.47 TCGA-CR-7398-01 6 51484071 51484071 C T PKHD1 Silent p.L4011L 0.39 TCGA-CR-7398-01 6 55120039 55120039 C T HCRTR2 Missense_Mutation p.R170C 0.40 deleterious(0) probably_damaging(0.932) TCGA-CR-7398-01 6 62995903 62995903 C G KHDRBS2 5'UTR 0.62 TCGA-CR-7398-01 6 66204788 66204788 C A EYS Missense_Mutation p.Q172H 0.30 tolerated_low_confidence(0.11) probably_damaging(0.965) TCGA-CR-7398-01 6 70092801 70092802 - G BAI3 Frame_Shift_Ins p.D1453Gfs*26 0.27 TCGA-CR-7398-01 6 7568065 7568066 - C DSP Frame_Shift_Ins p.I399Hfs*32 0.21 TCGA-CR-7398-01 6 7884653 7884653 G A TXNDC5 Missense_Mutation p.A372V 0.28 tolerated(0.24) benign(0.029) TCGA-CR-7398-01 6 88127994 88127994 C A C6ORF165 Silent p.R234R 0.37 TCGA-CR-7398-01 6 96651430 96651430 G C FUT9 Missense_Mutation p.W133C 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 6 96651555 96651555 C G FUT9 Missense_Mutation p.T175R 0.31 tolerated(0.52) benign(0.02) TCGA-CR-7398-01 7 123092911 123092911 C A IQUB Missense_Mutation p.Q754H 0.68 deleterious(0.03) benign(0.111) TCGA-CR-7398-01 7 12692386 12692386 C T SCIN 3'UTR 0.58 TCGA-CR-7398-01 7 131831391 131831391 G C PLXNA4 Missense_Mutation p.L1645V 0.62 tolerated(0.32) possibly_damaging(0.844) TCGA-CR-7398-01 7 133884049 133884049 G C LRGUK Missense_Mutation p.E541D 0.60 tolerated(0.08) probably_damaging(0.991) TCGA-CR-7398-01 7 30701809 30701809 C A CRHR2 Missense_Mutation p.A268S 0.39 deleterious(0.05) possibly_damaging(0.748) TCGA-CR-7398-01 7 36462289 36462289 G T ANLN Nonsense_Mutation p.E783* 0.08 TCGA-CR-7398-01 7 53103797 53103797 G T POM121L12 Nonsense_Mutation p.E145* 0.32 TCGA-CR-7398-01 7 53104298 53104298 G A POM121L12 3'UTR 0.28 TCGA-CR-7398-01 7 64168848 64168848 T G ZNF107 Missense_Mutation p.C722W 0.48 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 7 64388382 64388382 A G ZNF273 Missense_Mutation p.K226E 0.53 tolerated(0.12) benign(0.13) TCGA-CR-7398-01 7 99654694 99654694 G A ZSCAN21 Missense_Mutation p.G22E 0.64 tolerated(0.65) probably_damaging(0.984) TCGA-CR-7398-01 8 103297762 103297762 G C UBR5 Nonsense_Mutation p.Y1821* 0.13 TCGA-CR-7398-01 8 110489571 110489571 C T PKHD1L1 Missense_Mutation p.P3012L 0.41 deleterious(0) benign(0.314) TCGA-CR-7398-01 8 113259248 113259248 C A CSMD3 Splice_Site p.X3408_splice 0.33 TCGA-CR-7398-01 8 120430512 120430512 A T NOV Silent p.P175P 0.38 TCGA-CR-7398-01 8 12586411 12586411 T G LONRF1 Missense_Mutation p.K670T 0.36 deleterious(0) benign(0.035) TCGA-CR-7398-01 8 132052592 132052592 C A ADCY8 5'UTR 0.43 TCGA-CR-7398-01 8 143832542 143832542 C A LYPD2 Silent p.S35S 0.42 TCGA-CR-7398-01 8 20005224 20005224 T A SLC18A1 Missense_Mutation p.D407V 0.37 deleterious(0) probably_damaging(1) TCGA-CR-7398-01 8 24151595 24151595 C G ADAM28 5'UTR 0.25 TCGA-CR-7398-01 8 35542267 35542267 G T UNC5D Missense_Mutation p.V307L 0.35 deleterious(0.02) possibly_damaging(0.777) TCGA-CR-7398-01 8 37623867 37623867 T C PROSC Silent p.L105L 0.45 TCGA-CR-7398-01 8 48697683 48697683 C A PRKDC Nonsense_Mutation p.E3699* 0.41 TCGA-CR-7398-01 8 55538955 55538955 C T RP1 Missense_Mutation p.S838F 0.40 deleterious(0.04) benign(0.031) TCGA-CR-7398-01 8 55542017 55542017 C G RP1 Missense_Mutation p.Q1859E 0.53 tolerated(0.19) benign(0.079) TCGA-CR-7398-01 8 67342479 67342479 C A RRS1 3'UTR 0.41 TCGA-CR-7398-01 8 88886016 88886016 G A DCAF4L2 Missense_Mutation p.H62Y 0.43 tolerated(0.1) benign(0.001) TCGA-CR-7398-01 8 89081749 89081749 C A MMP16 Intron 0.35 TCGA-CR-7398-01 8 93003886 93003886 C T RUNX1T1 Silent p.R335R 0.32 TCGA-CR-7398-01 9 113459720 113459720 C T MUSK Missense_Mutation p.S201F 0.52 deleterious(0) probably_damaging(0.994) TCGA-CR-7398-01 9 115760032 115760032 C T ZNF883 RNA 0.38 TCGA-CR-7398-01 9 116764924 116764924 G T ZNF618 Nonsense_Mutation p.E146* 0.24 TCGA-CR-7398-01 9 117071686 117071686 C T COL27A1 Silent p.F1788F 0.39 TCGA-CR-7398-01 9 123550177 123550177 C T FBXW2 Silent p.K120K 0.44 TCGA-CR-7398-01 9 125377755 125377755 G A OR1Q1 Missense_Mutation p.V247M 0.37 deleterious(0.01) probably_damaging(0.947) TCGA-CR-7398-01 9 125391641 125391641 G A OR1B1 Silent p.H58H 0.33 TCGA-CR-7398-01 9 138415086 138415086 G C LCN1 Missense_Mutation p.G77A 0.25 deleterious(0) possibly_damaging(0.827) TCGA-CR-7398-01 9 40702701 40702701 C A SPATA31A3 Missense_Mutation p.P120T 0.15 tolerated(0.09) probably_damaging(0.958) TCGA-CR-7398-01 9 77354822 77354822 C A TRPM6 Missense_Mutation p.Q1768H 0.38 deleterious(0) probably_damaging(0.984) TCGA-CR-7398-01 9 84532119 84532119 T A SPATA31D5P RNA 0.28 TCGA-CR-7398-01 9 8485777 8485777 G T PTPRD Missense_Mutation p.L1014M 0.50 tolerated(1) probably_damaging(0.986) TCGA-CR-7398-01 9 85627405 85627405 C T RASEF Missense_Mutation p.V263I 0.24 tolerated(1) benign(0.001) TCGA-CR-7398-01 9 90388441 90388441 A G CTSL3P RNA 0.41 TCGA-CR-7398-01 9 98678717 98678717 G A ERCC6L2 Splice_Site p.X397_splice 0.40 TCGA-CR-7398-01 X 100125791 100125791 C T NOX1 Missense_Mutation p.G20R 0.36 deleterious(0.01) probably_damaging(0.933) TCGA-CR-7398-01 X 100417906 100417906 C T CENPI Missense_Mutation p.H741Y 0.43 deleterious(0.02) benign(0.085) TCGA-CR-7398-01 X 101912157 101912157 C G GPRASP1 Missense_Mutation p.Q1106E 0.33 tolerated(0.16) benign(0.033) TCGA-CR-7398-01 X 103432977 103432977 G A FAM199X Missense_Mutation p.R329Q 0.36 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-CR-7398-01 X 104464080 104464080 C T TEX13A Missense_Mutation p.D266N 0.37 tolerated(0.34) benign(0.001) TCGA-CR-7398-01 X 107097876 107097876 G C MID2 Missense_Mutation p.R253P 0.40 deleterious(0.01) probably_damaging(0.914) TCGA-CR-7398-01 X 107977346 107977346 G C IRS4 Nonsense_Mutation p.Y743* 0.36 TCGA-CR-7398-01 X 117527102 117527102 G A WDR44 Missense_Mutation p.V232I 0.40 tolerated_low_confidence(0.41) benign(0.013) TCGA-CR-7398-01 X 118723982 118723982 A T NKRF Missense_Mutation p.V484D 0.35 tolerated(0.53) probably_damaging(0.911) TCGA-CR-7398-01 X 119005776 119005776 G A RNF113A 5'UTR 0.36 TCGA-CR-7398-01 X 119037469 119037469 C G AKAP14 Missense_Mutation p.P61A 0.24 tolerated(0.09) benign(0.242) TCGA-CR-7398-01 X 119211114 119211114 G T RHOXF2B Silent p.G73G 0.29 TCGA-CR-7398-01 X 119388366 119388366 A T ZBTB33 Missense_Mutation p.S366C 0.33 deleterious(0.04) benign(0.171) TCGA-CR-7398-01 X 122318254 122318254 G C GRIA3 5'UTR 0.40 TCGA-CR-7398-01 X 122778702 122778702 G A THOC2 Missense_Mutation p.S496F 0.34 deleterious(0) possibly_damaging(0.897) TCGA-CR-7398-01 X 130215646 130215646 G T ARHGAP36 Missense_Mutation p.G3C 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-7398-01 X 130220538 130220538 C T ARHGAP36 Missense_Mutation p.A462V 0.35 deleterious(0.03) possibly_damaging(0.533) TCGA-CR-7398-01 X 135323385 135323385 C G MAP7D3 Missense_Mutation p.D157H 0.40 deleterious(0.01) benign(0.4) TCGA-CR-7398-01 X 135633067 135633067 C A VGLL1 Intron 0.31 TCGA-CR-7398-01 X 140995682 140995682 T A MAGEC1 Missense_Mutation p.V831E 0.41 tolerated_low_confidence(0.24) unknown(0) TCGA-CR-7398-01 X 140996136 140996136 C A MAGEC1 Silent p.L982L 0.36 TCGA-CR-7398-01 X 142803752 142803752 G T SPANXN2 Missense_Mutation p.P4Q 0.32 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-CR-7398-01 X 144906246 144906246 G T SLITRK2 Missense_Mutation p.S768I 0.36 tolerated(0.13) benign(0.042) TCGA-CR-7398-01 X 150348250 150348250 C G GPR50 Missense_Mutation p.I65M 0.32 tolerated(0.17) benign(0.261) TCGA-CR-7398-01 X 150780162 150780162 G C PASD1 Silent p.L48L 0.15 TCGA-CR-7398-01 X 150791486 150791486 C A PASD1 Silent p.R166R 0.38 TCGA-CR-7398-01 X 150840134 150840134 G T PASD1 Silent p.G440G 0.45 TCGA-CR-7398-01 X 21670529 21670529 G A CNKSR2 Missense_Mutation p.D999N 0.65 deleterious(0.01) benign(0.021) TCGA-CR-7398-01 X 21674749 21674749 G A KLHL34 Silent p.D386D 0.61 TCGA-CR-7398-01 X 27998027 27998027 G A DCAF8L1 Silent p.F475F 0.62 TCGA-CR-7398-01 X 32361265 32361265 C A DMD Nonsense_Mutation p.E1909* 0.68 TCGA-CR-7398-01 X 35821242 35821242 C A MAGEB16 Missense_Mutation p.A310E 0.72 tolerated(1) unknown(0) TCGA-CR-7398-01 X 37027150 37027150 C A FAM47C Missense_Mutation p.R223S 0.58 tolerated(0.47) possibly_damaging(0.545) TCGA-CR-7398-01 X 47918863 47918863 T A ZNF630 Missense_Mutation p.K323M 0.78 deleterious(0) possibly_damaging(0.476) TCGA-CR-7398-01 X 50377848 50377848 G C SHROOM4 Missense_Mutation p.R409G 0.67 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 X 55042056 55042056 G A ALAS2 Missense_Mutation p.R375C 0.64 deleterious(0) probably_damaging(0.999) TCGA-CR-7398-01 X 62917154 62917154 C G ARHGEF9 Missense_Mutation p.D138H 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-CR-7398-01 X 63410016 63410016 C T AMER1 Missense_Mutation p.V1051M 0.47 tolerated(0.18) benign(0.008) TCGA-CR-7398-01 X 64955169 64955169 G T MSN Missense_Mutation p.R279L 0.30 tolerated(0.4) possibly_damaging(0.879) TCGA-CR-7398-01 X 73811496 73811496 G T RLIM Missense_Mutation p.Q552K 0.36 deleterious(0) probably_damaging(0.993) TCGA-CR-7398-01 X 73811508 73811508 G C RLIM Missense_Mutation p.L548V 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-CR-7398-01 X 73963237 73963237 G T KIAA2022 Silent p.G385G 0.25 TCGA-CR-7398-01 X 77392460 77392460 G T TAF9B Silent p.R145R 0.38 TCGA-CR-7398-01 X 86773132 86773132 G T KLHL4 Missense_Mutation p.G79V 0.39 tolerated_low_confidence(0.16) possibly_damaging(0.831) TCGA-CR-7398-01 X 90690670 90690670 G T PABPC5 Missense_Mutation p.D32Y 0.31 deleterious(0) probably_damaging(0.994) TCGA-CR-7398-01 X 99931173 99931173 C A SYTL4 Missense_Mutation p.G623V 0.38 deleterious(0.03) probably_damaging(1) TCGA-CR-7399-01 10 103771498 103771498 G C C10orf76 Missense_Mutation p.F271L 0.19 tolerated(0.62) benign(0.023) TCGA-CR-7399-01 10 105793987 105793987 C T COL17A1 Missense_Mutation p.G1291D 0.15 benign(0.003) TCGA-CR-7399-01 10 108377909 108377909 T A SORCS1 Missense_Mutation p.Y973F 0.17 tolerated(0.4) possibly_damaging(0.499) TCGA-CR-7399-01 10 135012615 135012615 G T KNDC1 Missense_Mutation p.R868L 0.25 tolerated(0.34) benign(0.007) TCGA-CR-7399-01 10 54529051 54529051 G C MBL2 Nonsense_Mutation p.S110* 0.14 TCGA-CR-7399-01 10 55892736 55892736 G T PCDH15 Missense_Mutation p.L606I 0.17 tolerated(0.21) possibly_damaging(0.836) TCGA-CR-7399-01 10 5836966 5836966 C T GDI2 Missense_Mutation p.M90I 0.42 tolerated(1) benign(0.077) TCGA-CR-7399-01 10 63957982 63957982 G A RTKN2 Silent p.P505P 0.18 TCGA-CR-7399-01 10 67726465 67726465 G A CTNNA3 Silent p.L769L 0.20 TCGA-CR-7399-01 10 68936676 68936676 T C CTNNA3 Intron 0.31 TCGA-CR-7399-01 10 75560118 75560118 C G ZSWIM8 Silent p.T1638T 0.19 TCGA-CR-7399-01 10 8100316 8100316 T A GATA3 Missense_Mutation p.L97Q 0.14 deleterious(0) probably_damaging(0.97) TCGA-CR-7399-01 10 85992040 85992040 G T LRIT1 Silent p.P505P 0.27 TCGA-CR-7399-01 10 86133458 86133458 C T CCSER2 Missense_Mutation p.L501F 0.18 deleterious(0) probably_damaging(0.999) TCGA-CR-7399-01 10 96064340 96064340 C T PLCE1 Nonsense_Mutation p.Q1854* 0.17 TCGA-CR-7399-01 11 102595499 102595499 T C MMP8 Missense_Mutation p.T30A 0.24 tolerated(0.63) benign(0.005) TCGA-CR-7399-01 11 123480966 123480966 C T GRAMD1B Silent p.H470H 0.26 TCGA-CR-7399-01 11 124266426 124266426 A T OR8B3 Silent p.S274S 0.18 TCGA-CR-7399-01 11 17426158 17426158 A T ABCC8 Missense_Mutation p.L1153Q 0.35 deleterious(0) possibly_damaging(0.835) TCGA-CR-7399-01 11 22396420 22396420 C A SLC17A6 Silent p.I387I 0.22 TCGA-CR-7399-01 11 3422998 3422998 C G TSSC2 RNA 0.17 TCGA-CR-7399-01 11 46750211 46750211 C A F2 Intron 0.25 TCGA-CR-7399-01 11 4945221 4945221 G A OR51G1 Silent p.L117L 0.25 TCGA-CR-7399-01 11 51411502 51411502 G C OR4A5 Silent p.L298L 0.29 TCGA-CR-7399-01 11 5474807 5474807 C A OR51I2 Missense_Mutation p.P30H 0.38 deleterious(0) probably_damaging(0.999) TCGA-CR-7399-01 11 55563722 55563722 C A OR5D14 Missense_Mutation p.R231S 0.15 tolerated(0.32) benign(0.008) TCGA-CR-7399-01 11 55579653 55579653 C T OR5L1 Silent p.A237A 0.26 TCGA-CR-7399-01 11 56432020 56432020 C A OR5AR1 Missense_Mutation p.P287T 0.21 deleterious(0) probably_damaging(0.998) TCGA-CR-7399-01 11 5701005 5701005 C A TRIM5 Missense_Mutation p.A135S 0.17 deleterious(0.01) possibly_damaging(0.902) TCGA-CR-7399-01 11 5758444 5758444 C A OR56B1 Missense_Mutation p.S233Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-CR-7399-01 11 5809561 5809561 A C OR52N1 Silent p.T162T 0.23 TCGA-CR-7399-01 11 58126434 58126434 G T OR5B17 Missense_Mutation p.L37M 0.14 tolerated_low_confidence(0.05) benign(0.175) TCGA-CR-7399-01 11 58660165 58660165 G C GLYATL1P2 RNA 0.12 TCGA-CR-7399-01 11 59245729 59245729 C A OR4D10 Missense_Mutation p.T276N 0.20 deleterious(0.04) benign(0.35) TCGA-CR-7399-01 11 6048932 6048932 C A OR56A1 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) unknown(0) TCGA-CR-7399-01 11 61563897 61563897 G T FEN1 Missense_Mutation p.R355L 0.16 deleterious(0) benign(0.036) TCGA-CR-7399-01 11 65995047 65995047 G T PACS1 Missense_Mutation p.D456Y 0.17 tolerated(1) benign(0.011) TCGA-CR-7399-01 11 67223649 67223649 C T CABP4 Intron 0.22 TCGA-CR-7399-01 11 67803822 67803822 G C NDUFS8 Missense_Mutation p.A159P 0.18 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CR-7399-01 11 71238392 71238392 G A KRTAP5-7 Missense_Mutation p.G16S 0.64 unknown(0) TCGA-CR-7399-01 11 71238393 71238393 G T KRTAP5-7 Missense_Mutation p.G16V 0.64 unknown(0) TCGA-CR-7399-01 12 101679354 101679354 G A UTP20 Missense_Mutation p.E45K 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-CR-7399-01 12 102040650 102040650 G - MYBPC1 Frame_Shift_Del p.E334Sfs*4 0.29 TCGA-CR-7399-01 12 124008061 124008065 CTCCT - RILPL1 Frame_Shift_Del p.E146Gfs*6 0.15 TCGA-CR-7399-01 12 124862827 124862827 G A NCOR2 Missense_Mutation p.S708L 0.32 unknown(0) TCGA-CR-7399-01 12 130926854 130926854 C A RIMBP2 Missense_Mutation p.S331I 0.17 deleterious(0.04) benign(0.197) TCGA-CR-7399-01 12 13716163 13716163 C G GRIN2B Missense_Mutation p.A1337P 0.28 deleterious(0.01) probably_damaging(0.951) TCGA-CR-7399-01 12 18793360 18793360 C T PIK3C2G Intron 0.23 TCGA-CR-7399-01 12 20968719 20968719 C G LST3 Nonsense_Mutation p.S16* 0.13 TCGA-CR-7399-01 12 21069224 21069224 G T SLCO1B3 3'UTR 0.31 TCGA-CR-7399-01 12 21196321 21196321 G T SLCO1B7 Missense_Mutation p.G214C 0.12 deleterious(0) probably_damaging(0.978) TCGA-CR-7399-01 12 23689547 23689547 C G SOX5 Missense_Mutation p.A610P 0.25 deleterious(0) probably_damaging(0.998) TCGA-CR-7399-01 12 2690864 2690864 G T CACNA1C Silent p.L668L 0.12 TCGA-CR-7399-01 12 30792543 30792543 G A IPO8 Missense_Mutation p.H799Y 0.33 deleterious(0.03) benign(0.212) TCGA-CR-7399-01 12 51855076 51855076 G A SLC4A8 Splice_Site p.X367_splice 0.15 TCGA-CR-7399-01 12 52309931 52309931 C A ACVRL1 Missense_Mutation p.T387K 0.17 tolerated(0.06) possibly_damaging(0.843) TCGA-CR-7399-01 12 57908991 57908991 A G MARS Missense_Mutation p.M755V 0.51 tolerated(0.06) benign(0.013) TCGA-CR-7399-01 12 58009731 58009731 C T ARHGEF25 Missense_Mutation p.P490S 0.19 tolerated(0.08) benign(0.024) TCGA-CR-7399-01 12 73046936 73046936 G A TRHDE Missense_Mutation p.R950K 0.25 tolerated(0.18) probably_damaging(0.974) TCGA-CR-7399-01 12 78562638 78562638 C A NAV3 Missense_Mutation p.P1658H 0.20 tolerated(0.14) possibly_damaging(0.482) TCGA-CR-7399-01 12 8196611 8196611 G T FOXJ2 Missense_Mutation p.G181V 0.18 tolerated(0.19) benign(0.05) TCGA-CR-7399-01 12 977147 977147 C T WNK1 Intron 0.34 TCGA-CR-7399-01 13 102359121 102359121 C - ITGBL1 Frame_Shift_Del p.C384Vfs*23 0.19 TCGA-CR-7399-01 13 113803734 113803734 C A F10 Missense_Mutation p.A457D 0.24 tolerated(0.08) benign(0.068) TCGA-CR-7399-01 13 21751049 21751049 A C MRP63 Splice_Site 0.06 TCGA-CR-7399-01 13 25033197 25033197 A T PARP4 Missense_Mutation p.H803Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-CR-7399-01 13 32313845 32313845 T C RXFP2 Splice_Site p.X32_splice 0.49 TCGA-CR-7399-01 13 36748876 36748876 G C SOHLH2 Missense_Mutation p.P335A 0.31 tolerated(0.06) possibly_damaging(0.471) TCGA-CR-7399-01 13 58206853 58206853 G C PCDH17 Missense_Mutation p.R58P 0.25 tolerated_low_confidence(0.25) benign(0.258) TCGA-CR-7399-01 13 70681720 70681720 G - KLHL1 Frame_Shift_Del p.L38Cfs*28 0.23 TCGA-CR-7399-01 13 86369426 86369426 C T SLITRK6 Silent p.S406S 0.32 TCGA-CR-7399-01 14 103986585 103986585 G C CKB Missense_Mutation p.L281V 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7399-01 14 105408248 105408248 G C AHNAK2 Missense_Mutation p.Q4514E 0.30 benign(0.108) TCGA-CR-7399-01 14 29237169 29237169 C A FOXG1 Silent p.S228S 0.60 TCGA-CR-7399-01 14 39790183 39790183 G T CTAGE5 Missense_Mutation p.R537I 0.20 deleterious(0) probably_damaging(0.991) TCGA-CR-7399-01 14 58875876 58875876 G A TIMM9 Missense_Mutation p.S49L 0.59 tolerated(0.07) benign(0.239) TCGA-CR-7399-01 14 60574714 60574714 A C PCNXL4 Intron 0.20 TCGA-CR-7399-01 15 23811612 23811612 C A MKRN3 Nonsense_Mutation p.S228* 0.30 TCGA-CR-7399-01 15 25227162 25227162 T A SNRPN 3'Flank 0.41 TCGA-CR-7399-01 16 30518144 30518144 G A ITGAL Silent p.P825P 0.17 TCGA-CR-7399-01 16 30748614 30748614 A - SRCAP Frame_Shift_Del p.H2418Lfs*57 0.16 TCGA-CR-7399-01 16 46771727 46771727 C T MYLK3 Silent p.E299E 0.15 TCGA-CR-7399-01 16 46956246 46956246 C A GPT2 Missense_Mutation p.P377H 0.26 deleterious(0) probably_damaging(0.996) TCGA-CR-7399-01 16 57060492 57060492 G T NLRC5 Missense_Mutation p.R546L 0.34 deleterious(0.01) possibly_damaging(0.895) TCGA-CR-7399-01 16 67404886 67404886 T C LRRC36 Missense_Mutation p.V412A 0.26 tolerated_low_confidence(0.1) benign(0.037) TCGA-CR-7399-01 17 10318851 10318851 G A MYH8 Nonsense_Mutation p.Q196* 0.40 TCGA-CR-7399-01 17 16203244 16203244 C T PIGL Silent p.H126H 0.16 TCGA-CR-7399-01 17 18155815 18155815 C T FLII Missense_Mutation p.E357K 0.10 deleterious(0.04) possibly_damaging(0.83) TCGA-CR-7399-01 17 18584121 18584121 G A ZNF286B Missense_Mutation p.P20L 0.10 tolerated(0.34) benign(0.001) TCGA-CR-7399-01 17 21319578 21319578 G C KCNJ12 Missense_Mutation p.M308I 0.05 deleterious(0.04) probably_damaging(0.975) TCGA-CR-7399-01 17 21731540 21731540 C T UBBP4 Silent p.G205G 0.23 TCGA-CR-7399-01 17 26942796 26942796 G A KIAA0100 Silent p.D2137D 0.33 TCGA-CR-7399-01 17 30615953 30615953 G A RHBDL3 Missense_Mutation p.R146Q 0.15 tolerated(0.2) possibly_damaging(0.892) TCGA-CR-7399-01 17 37075034 37075034 C T LASP1 3'UTR 0.36 TCGA-CR-7399-01 17 38447873 38447873 G A CDC6 Missense_Mutation p.G205R 0.15 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 17 46673848 46673848 C T HOXB6 Nonsense_Mutation p.W201* 0.16 TCGA-CR-7399-01 17 48435591 48435592 AG - XYLT2 Frame_Shift_Del p.E656Afs*46 0.15 TCGA-CR-7399-01 17 56348175 56348175 G C MPO Missense_Mutation p.L694V 0.04 deleterious(0) probably_damaging(0.941) TCGA-CR-7399-01 17 56676479 56676479 C T TEX14 Missense_Mutation p.E749K 0.23 deleterious(0) benign(0.109) TCGA-CR-7399-01 17 59479058 59479058 C T TBX2 Missense_Mutation p.P137S 0.10 tolerated(0.07) benign(0.406) TCGA-CR-7399-01 17 72877306 72877306 C A FADS6 Missense_Mutation p.W206C 0.48 tolerated(0.07) benign(0.33) TCGA-CR-7399-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.19 deleterious(0.03) probably_damaging(1) TCGA-CR-7399-01 17 7578211 7578211 C A TP53 Missense_Mutation p.R213L 0.38 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 17 76967754 76967754 C T LGALS3BP Silent p.K554K 0.08 TCGA-CR-7399-01 17 7851510 7851510 C T CNTROB Nonsense_Mutation p.Q749* 0.14 TCGA-CR-7399-01 17 81050915 81050915 C T METRNL Missense_Mutation p.P187L 0.18 deleterious(0.01) possibly_damaging(0.814) TCGA-CR-7399-01 18 14537933 14537933 A T POTEC Missense_Mutation p.L226Q 0.10 deleterious(0) probably_damaging(0.995) TCGA-CR-7399-01 18 3597341 3597341 C G DLGAP1 Intron 0.26 TCGA-CR-7399-01 18 56247140 56247140 C T ALPK2 Missense_Mutation p.V290M 0.21 tolerated(0.22) benign(0.004) TCGA-CR-7399-01 18 70209167 70209167 C A CBLN2 Missense_Mutation p.A77S 0.35 tolerated(0.34) benign(0.018) TCGA-CR-7399-01 19 12090302 12090302 T C ZNF763 3'UTR 0.19 TCGA-CR-7399-01 19 17122307 17122307 G A CPAMD8 Silent p.T198T 0.31 TCGA-CR-7399-01 19 20727499 20727499 T G ZNF737 Missense_Mutation p.T504P 0.19 deleterious(0) possibly_damaging(0.649) TCGA-CR-7399-01 19 22272134 22272134 T A ZNF257 Missense_Mutation p.S528T 0.20 deleterious(0.04) possibly_damaging(0.53) TCGA-CR-7399-01 19 24310288 24310288 G T ZNF254 Missense_Mutation p.G496C 0.19 deleterious(0) probably_damaging(0.992) TCGA-CR-7399-01 19 39994757 39994757 G T DLL3 Missense_Mutation p.Q233H 0.15 deleterious(0.03) possibly_damaging(0.553) TCGA-CR-7399-01 19 41754717 41754717 C T AXL Missense_Mutation p.T568M 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-7399-01 19 43579547 43579547 C A PSG2 Missense_Mutation p.G223V 0.19 tolerated(1) benign(0.003) TCGA-CR-7399-01 19 46525990 46525990 C T PGLYRP1 Intron 0.16 TCGA-CR-7399-01 19 47259844 47259844 G C FKRP Silent p.R379R 0.18 TCGA-CR-7399-01 19 4902866 4902866 T C ARRDC5 Missense_Mutation p.E5G 0.37 deleterious_low_confidence(0.01) benign(0.011) TCGA-CR-7399-01 19 52034090 52034090 G A SIGLEC6 Missense_Mutation p.S184L 0.20 deleterious(0.05) probably_damaging(0.99) TCGA-CR-7399-01 19 52505068 52505068 G T ZNF615 Missense_Mutation p.S79Y 0.20 deleterious(0) benign(0.014) TCGA-CR-7399-01 19 53367282 53367282 T A CTD-2331H12.5 5'Flank 0.29 TCGA-CR-7399-01 19 56422098 56422098 T A NLRP13 Missense_Mutation p.T705S 0.18 tolerated(0.34) benign(0.003) TCGA-CR-7399-01 19 57326339 57326339 G T PEG3 Nonsense_Mutation p.Y1157* 0.20 TCGA-CR-7399-01 19 5783814 5783814 C A PRR22 Silent p.P148P 0.60 TCGA-CR-7399-01 19 59010610 59010610 T G SLC27A5 Intron 0.17 TCGA-CR-7399-01 19 9049185 9049185 C T MUC16 Missense_Mutation p.G10816S 0.26 benign(0.008) TCGA-CR-7399-01 19 9085769 9085769 G A MUC16 Missense_Mutation p.H2016Y 0.25 unknown(0) TCGA-CR-7399-01 19 9297244 9297244 G A OR7D2 Missense_Mutation p.A263T 0.30 tolerated_low_confidence(0.07) benign(0.103) TCGA-CR-7399-01 1 148932888 148932888 G T RP11-14N7.2 RNA 0.06 TCGA-CR-7399-01 1 152882573 152882573 A G IVL Silent p.K100K 0.32 TCGA-CR-7399-01 1 156882415 156882415 G T PEAR1 Splice_Site p.X737_splice 0.50 TCGA-CR-7399-01 1 158641851 158641851 C A SPTA1 Nonsense_Mutation p.E496* 0.46 TCGA-CR-7399-01 1 165532977 165532977 C T LRRC52 Silent p.D286D 0.10 TCGA-CR-7399-01 1 169565302 169565302 G T SELP Nonsense_Mutation p.Y654* 0.20 TCGA-CR-7399-01 1 169572435 169572435 G T SELP Missense_Mutation p.P512T 0.39 tolerated(0.49) possibly_damaging(0.559) TCGA-CR-7399-01 1 175292419 175292419 C T TNR 3'UTR 0.17 TCGA-CR-7399-01 1 204006319 204006319 G A LINC00303 Intron 0.42 TCGA-CR-7399-01 1 213134597 213134597 G T VASH2 Splice_Site p.X122_splice 0.33 TCGA-CR-7399-01 1 214488115 214488115 G A SMYD2 Nonsense_Mutation p.W83* 0.17 TCGA-CR-7399-01 1 215987092 215987092 G C USH2A Missense_Mutation p.A3242G 0.18 benign(0.091) TCGA-CR-7399-01 1 216595476 216595476 T A USH2A Missense_Mutation p.H68L 0.42 benign(0.011) TCGA-CR-7399-01 1 220089179 220089179 C A SLC30A10 Missense_Mutation p.R357M 0.16 tolerated(0.11) benign(0.103) TCGA-CR-7399-01 1 222721186 222721186 G A HHIPL2 Silent p.F67F 0.15 TCGA-CR-7399-01 1 22332384 22332384 G T CELA3A Intron 0.18 TCGA-CR-7399-01 1 229773042 229773042 C T URB2 Silent p.I894I 0.38 TCGA-CR-7399-01 1 235324647 235324664 GCCGGGCGGCGGCGAAGG - RBM34 5'UTR 0.38 TCGA-CR-7399-01 1 236729217 236729217 A T HEATR1 Splice_Site p.X1479_splice 0.28 TCGA-CR-7399-01 1 237777666 237777666 C A RYR2 Missense_Mutation p.H1746Q 0.24 benign(0.306) TCGA-CR-7399-01 1 240371390 240371390 G T FMN2 Missense_Mutation p.G1093V 0.17 unknown(0) TCGA-CR-7399-01 1 243349134 243349134 C A CEP170 Nonsense_Mutation p.E505* 0.17 TCGA-CR-7399-01 1 2452658 2452658 C T PANK4 Missense_Mutation p.E102K 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7399-01 1 245849896 245849896 G A KIF26B Missense_Mutation p.S1204N 0.28 tolerated(1) unknown(0) TCGA-CR-7399-01 1 247599410 247599410 C A NLRP3 Silent p.A879A 0.36 TCGA-CR-7399-01 1 248402450 248402450 A T OR2M4 Missense_Mutation p.I74F 0.17 deleterious(0) possibly_damaging(0.714) TCGA-CR-7399-01 1 248551255 248551255 G C OR2T6 Missense_Mutation p.G116R 0.22 deleterious(0) probably_damaging(0.997) TCGA-CR-7399-01 1 26510922 26510922 C T CNKSR1 Missense_Mutation p.P344L 0.21 tolerated(0.17) benign(0.023) TCGA-CR-7399-01 1 32660790 32660790 G T TXLNA Missense_Mutation p.R545S 0.38 tolerated_low_confidence(0.7) benign(0) TCGA-CR-7399-01 1 34204749 34204749 C T CSMD2 Missense_Mutation p.R747Q 0.33 deleterious(0.01) probably_damaging(0.984) TCGA-CR-7399-01 1 38511546 38511546 C G POU3F1 Missense_Mutation p.Q290H 0.18 deleterious(0) possibly_damaging(0.714) TCGA-CR-7399-01 1 40235986 40235986 C G OXCT2 Missense_Mutation p.M314I 0.12 deleterious(0.01) benign(0.392) TCGA-CR-7399-01 1 40767556 40767556 G A COL9A2 Missense_Mutation p.R600C 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7399-01 1 43824867 43824867 C T CDC20 5'UTR 0.24 TCGA-CR-7399-01 1 64644143 64644143 G T ROR1 Missense_Mutation p.G807C 0.27 tolerated(0.1) possibly_damaging(0.895) TCGA-CR-7399-01 1 70460276 70460276 G A LRRC7 Missense_Mutation p.D284N 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-CR-7399-01 1 78324717 78324717 G T FAM73A Missense_Mutation p.G364V 0.12 deleterious(0.04) probably_damaging(1) TCGA-CR-7399-01 1 94997876 94997876 C T F3 Splice_Site p.X251_splice 0.22 TCGA-CR-7399-01 1 94997899 94997899 G T F3 Silent p.G243G 0.21 TCGA-CR-7399-01 20 34092038 34092038 A T CEP250 Silent p.A1947A 0.18 TCGA-CR-7399-01 20 8637904 8637904 C A PLCB1 Missense_Mutation p.P223H 0.12 deleterious(0) benign(0.133) TCGA-CR-7399-01 21 31812833 31812833 C A KRTAP15-1 Missense_Mutation p.T63K 0.19 tolerated(0.14) benign(0.265) TCGA-CR-7399-01 22 22285593 22285593 C A PPM1F Missense_Mutation p.G273V 0.28 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 22 29834658 29834658 G T RFPL1 5'UTR 0.19 TCGA-CR-7399-01 2 103324786 103324786 G C SLC9A2 Silent p.T759T 0.30 TCGA-CR-7399-01 2 109405345 109405345 A T CCDC138 Silent p.S63S 0.30 TCGA-CR-7399-01 2 111417591 111417591 C T BUB1 Missense_Mutation p.E414K 0.18 tolerated(0.08) benign(0.345) TCGA-CR-7399-01 2 116497460 116497460 G T DPP10 Silent p.P285P 0.19 TCGA-CR-7399-01 2 121107420 121107420 C A INHBB Missense_Mutation p.N398K 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 2 141299381 141299381 C T LRP1B Missense_Mutation p.G2452R 0.19 probably_damaging(0.953) TCGA-CR-7399-01 2 155555719 155555719 C A KCNJ3 Silent p.I144I 0.18 TCGA-CR-7399-01 2 158406691 158406691 A G ACVR1C Missense_Mutation p.I253T 0.33 deleterious(0) probably_damaging(0.999) TCGA-CR-7399-01 2 165768172 165768172 G T SLC38A11 Missense_Mutation p.P257T 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 2 179184986 179184986 C T OSBPL6 Intron 0.20 TCGA-CR-7399-01 2 179613245 179613245 G T TTN Intron 0.22 TCGA-CR-7399-01 2 179633515 179633515 C T TTN Missense_Mutation p.M3016I 0.30 TCGA-CR-7399-01 2 189907465 189907465 G A COL5A2 Missense_Mutation p.P1169L 0.27 unknown(0) TCGA-CR-7399-01 2 191940969 191940969 G T STAT4 Missense_Mutation p.A119D 0.15 deleterious(0) probably_damaging(0.989) TCGA-CR-7399-01 2 197021180 197021180 G C STK17B Missense_Mutation p.I106M 0.35 tolerated(0.97) possibly_damaging(0.755) TCGA-CR-7399-01 2 217279531 217279531 G A SMARCAL1 Missense_Mutation p.R35K 0.24 tolerated_low_confidence(0.41) benign(0) TCGA-CR-7399-01 2 219257742 219257743 - CT SLC11A1 Frame_Shift_Ins p.L403Sfs*20 0.17 TCGA-CR-7399-01 2 220034009 220034009 C G SLC23A3 Missense_Mutation p.R147T 0.32 tolerated(0.58) benign(0.029) TCGA-CR-7399-01 2 227924220 227924220 G T COL4A4 Missense_Mutation p.P762T 0.24 benign(0.09) TCGA-CR-7399-01 2 233194619 233194619 G - DIS3L2 Frame_Shift_Del p.Q614Kfs*31 0.16 TCGA-CR-7399-01 2 233322924 233322924 C G ALPI Intron 0.26 TCGA-CR-7399-01 2 24253907 24253908 AA - C2orf44 Frame_Shift_Del p.H689Qfs*9 0.08 TCGA-CR-7399-01 2 25469921 25469921 T A DNMT3A Missense_Mutation p.Q374L 0.16 tolerated(0.05) benign(0.02) TCGA-CR-7399-01 2 54081598 54081598 G A GPR75 Missense_Mutation p.P99L 0.06 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 2 68613641 68613641 C T PLEK Silent p.C160C 0.23 TCGA-CR-7399-01 2 74043891 74043891 C A C2orf78 Silent p.I847I 0.19 TCGA-CR-7399-01 2 77746278 77746278 G T LRRTM4 Missense_Mutation p.N239K 0.13 deleterious(0) probably_damaging(0.999) TCGA-CR-7399-01 2 79363173 79363173 G A REG1P RNA 0.17 TCGA-CR-7399-01 2 80101253 80101253 C G CTNNA2 Missense_Mutation p.L213V 0.27 deleterious(0.02) possibly_damaging(0.581) TCGA-CR-7399-01 2 80529767 80529767 G T LRRTM1 Missense_Mutation p.T393K 0.29 tolerated(0.46) benign(0.002) TCGA-CR-7399-01 2 80540759 80540759 C A CTNNA2 Intron 0.40 TCGA-CR-7399-01 2 90193223 90193223 C A IGKV1D-13 Silent p.G50G 0.20 TCGA-CR-7399-01 3 108373010 108373010 G T DZIP3 Missense_Mutation p.K684N 0.45 deleterious_low_confidence(0.05) possibly_damaging(0.478) TCGA-CR-7399-01 3 113172677 113172677 G C SPICE1 Nonsense_Mutation p.S593* 0.55 TCGA-CR-7399-01 3 123247241 123247241 C A PTPLB Missense_Mutation p.V125F 0.30 deleterious(0.05) probably_damaging(0.954) TCGA-CR-7399-01 3 126707921 126707921 G A PLXNA1 Missense_Mutation p.S162N 0.10 tolerated(0.29) possibly_damaging(0.507) TCGA-CR-7399-01 3 1269678 1269678 G T CNTN6 Splice_Site p.X120_splice 0.23 TCGA-CR-7399-01 3 130403120 130403120 G A PIK3R4 Missense_Mutation p.P1194L 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 3 134670706 134670706 T C EPHB1 Missense_Mutation p.F206S 0.14 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 3 136573436 136573436 A G SLC35G2 Missense_Mutation p.Y45C 0.13 tolerated(0.09) possibly_damaging(0.502) TCGA-CR-7399-01 3 137796423 137796423 C T DZIP1L Missense_Mutation p.R447H 0.14 tolerated(0.15) benign(0.186) TCGA-CR-7399-01 3 138338576 138338576 C T FAIM Intron 0.37 TCGA-CR-7399-01 3 138669186 138669186 C A C3orf72 Silent p.R100R 0.34 TCGA-CR-7399-01 3 143691744 143691744 C T C3orf58 Silent p.G190G 0.37 TCGA-CR-7399-01 3 147128596 147128596 G A ZIC1 Missense_Mutation p.E233K 0.16 deleterious(0.02) probably_damaging(0.919) TCGA-CR-7399-01 3 164732915 164732915 G T SI Missense_Mutation p.A1332E 0.09 deleterious(0.01) possibly_damaging(0.906) TCGA-CR-7399-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-CR-7399-01 3 184711810 184711810 G A VPS8 Missense_Mutation p.G1209R 0.30 tolerated(0.07) benign(0.04) TCGA-CR-7399-01 3 186974553 186974553 T C MASP1 Missense_Mutation p.T215A 0.09 tolerated(0.31) benign(0.005) TCGA-CR-7399-01 3 192078262 192078262 G T FGF12 Missense_Mutation p.P89T 0.24 deleterious(0) possibly_damaging(0.561) TCGA-CR-7399-01 3 36570191 36570191 A T STAC Silent p.P308P 0.25 TCGA-CR-7399-01 3 3888298 3888298 G A LRRN1 Missense_Mutation p.R658K 0.23 tolerated(0.37) benign(0.109) TCGA-CR-7399-01 3 39229057 39229057 G T XIRP1 Missense_Mutation p.T627N 0.31 deleterious(0) probably_damaging(0.997) TCGA-CR-7399-01 3 41497085 41497085 G A ULK4 Missense_Mutation p.A1132V 0.40 tolerated(0.14) benign(0.023) TCGA-CR-7399-01 3 42750369 42750369 G T CCDC13 3'UTR 0.45 TCGA-CR-7399-01 3 44762622 44762622 G A ZNF502 Missense_Mutation p.E105K 0.19 tolerated(0.6) benign(0.002) TCGA-CR-7399-01 3 46542079 46542079 G A RTP3 Missense_Mutation p.R130K 0.12 deleterious(0.03) benign(0.05) TCGA-CR-7399-01 3 53796040 53796040 G T CACNA1D Missense_Mutation p.A1288S 0.26 deleterious(0.03) benign(0.101) TCGA-CR-7399-01 3 85932571 85932571 C G CADM2 Silent p.S116S 0.15 TCGA-CR-7399-01 3 97806802 97806802 G T OR5AC2 Silent p.V262V 0.21 TCGA-CR-7399-01 3 9841894 9841894 C T ARPC4 Missense_Mutation p.P69S 0.19 deleterious(0.04) probably_damaging(0.949) TCGA-CR-7399-01 4 106744222 106744222 G A GSTCD Missense_Mutation p.G451D 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 4 114284553 114284553 C A ANK2 Missense_Mutation p.P3606T 0.19 probably_damaging(1) TCGA-CR-7399-01 4 177098210 177098210 C A WDR17 Missense_Mutation p.Q1190K 0.21 tolerated(0.18) probably_damaging(0.974) TCGA-CR-7399-01 4 185018464 185018464 G T ENPP6 Missense_Mutation p.R351S 0.18 tolerated(0.06) benign(0.206) TCGA-CR-7399-01 4 22749401 22749401 C A GBA3 Missense_Mutation p.P257T 0.20 deleterious(0.01) probably_damaging(0.939) TCGA-CR-7399-01 4 40115063 40115063 C A N4BP2 Missense_Mutation p.H533Q 0.19 tolerated(0.08) possibly_damaging(0.882) TCGA-CR-7399-01 4 42425687 42425687 C T ATP8A1 Missense_Mutation p.M1053I 0.29 tolerated(0.06) benign(0.01) TCGA-CR-7399-01 4 44680736 44680736 G A GUF1 Missense_Mutation p.A33T 0.17 tolerated_low_confidence(0.37) benign(0) TCGA-CR-7399-01 4 46314582 46314582 G A GABRA2 Missense_Mutation p.A136V 0.14 tolerated(0.06) possibly_damaging(0.85) TCGA-CR-7399-01 4 47857090 47857090 T A NFXL1 Nonsense_Mutation p.K803* 0.22 TCGA-CR-7399-01 4 53492412 53492412 G C USP46 Missense_Mutation p.L112V 0.19 tolerated(0.06) benign(0.16) TCGA-CR-7399-01 4 73956626 73956626 G A ANKRD17 Missense_Mutation p.P2240L 0.18 benign(0.002) TCGA-CR-7399-01 4 90169444 90169444 G T GPRIN3 Missense_Mutation p.S606R 0.22 deleterious(0.01) probably_damaging(0.945) TCGA-CR-7399-01 5 10415698 10415698 A G MARCH6 Missense_Mutation p.I689V 0.26 tolerated(1) benign(0.001) TCGA-CR-7399-01 5 121188322 121188322 G T FTMT Missense_Mutation p.D222Y 0.25 deleterious(0) benign(0.219) TCGA-CR-7399-01 5 128430682 128430682 G A ISOC1 Missense_Mutation p.E75K 0.23 tolerated_low_confidence(0.16) benign(0.002) TCGA-CR-7399-01 5 134870575 134870575 C G NEUROG1 3'UTR 0.23 TCGA-CR-7399-01 5 13719206 13719206 C T DNAH5 Missense_Mutation p.G4095E 0.23 probably_damaging(0.982) TCGA-CR-7399-01 5 138269800 138269800 C T CTNNA1 3'UTR 0.19 TCGA-CR-7399-01 5 140530921 140530921 C A PCDHB6 Silent p.I361I 0.26 TCGA-CR-7399-01 5 140558046 140558046 C G PCDHB8 Nonsense_Mutation p.S144* 0.21 TCGA-CR-7399-01 5 140559269 140559269 G T PCDHB8 Missense_Mutation p.V552L 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.715) TCGA-CR-7399-01 5 140719785 140719785 C - PCDHGA2 Frame_Shift_Del p.Y418Tfs*5 0.11 TCGA-CR-7399-01 5 140768028 140768028 G A PCDHGB4 Missense_Mutation p.E193K 0.21 deleterious(0.02) possibly_damaging(0.817) TCGA-CR-7399-01 5 142292826 142292826 G T ARHGAP26 Missense_Mutation p.K332N 0.21 deleterious(0) benign(0.403) TCGA-CR-7399-01 5 156186321 156186321 G C SGCD Missense_Mutation p.V265L 0.23 deleterious(0.01) benign(0.087) TCGA-CR-7399-01 5 169468122 169468122 G C DOCK2 Silent p.T1243T 0.10 TCGA-CR-7399-01 5 178770999 178770999 G T ADAMTS2 Missense_Mutation p.N101K 0.35 tolerated(0.81) benign(0.012) TCGA-CR-7399-01 5 179666940 179666940 T C MAPK9 Silent p.A348A 0.37 TCGA-CR-7399-01 5 180043408 180043408 G T FLT4 Silent p.R1060R 0.18 TCGA-CR-7399-01 5 24511453 24511453 T G CDH10 Missense_Mutation p.I329L 0.10 tolerated(0.14) benign(0.039) TCGA-CR-7399-01 5 32774814 32774814 G T NPR3 Missense_Mutation p.V354F 0.16 deleterious(0) possibly_damaging(0.833) TCGA-CR-7399-01 5 38427226 38427226 G T EGFLAM Silent p.R642R 0.14 TCGA-CR-7399-01 5 38427334 38427334 C T EGFLAM Silent p.G678G 0.10 TCGA-CR-7399-01 5 75428020 75428020 C T SV2C Missense_Mutation p.R149C 0.21 deleterious(0) probably_damaging(0.976) TCGA-CR-7399-01 5 82786136 82786136 A T VCAN Missense_Mutation p.Y97F 0.23 tolerated(0.08) possibly_damaging(0.539) TCGA-CR-7399-01 6 118015291 118015291 G A NUS1 Silent p.Q213Q 0.06 TCGA-CR-7399-01 6 121526220 121526220 C T TBC1D32 Splice_Site p.X857_splice 0.27 TCGA-CR-7399-01 6 135522834 135522834 G A MYB Missense_Mutation p.D670N 0.22 tolerated(0.12) benign(0.003) TCGA-CR-7399-01 6 146480525 146480525 G T GRM1 Missense_Mutation p.A248S 0.23 tolerated(0.09) possibly_damaging(0.512) TCGA-CR-7399-01 6 149719163 149719163 G A TAB2 Missense_Mutation p.C608Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-CR-7399-01 6 161015034 161015034 C T LPA Missense_Mutation p.M1195I 0.17 tolerated(0.12) possibly_damaging(0.621) TCGA-CR-7399-01 6 20102580 20102580 T C MBOAT1 Silent p.P475P 0.19 TCGA-CR-7399-01 6 25776987 25776987 T C SLC17A4 Intron 0.21 TCGA-CR-7399-01 6 29323758 29323758 C A OR5V1 Missense_Mutation p.C72F 0.25 tolerated(0.19) probably_damaging(0.999) TCGA-CR-7399-01 6 29641451 29641451 C G ZFP57 Missense_Mutation p.R146T 0.23 tolerated(0.45) benign(0.01) TCGA-CR-7399-01 6 39290287 39290287 C A KCNK16 Missense_Mutation p.W10C 0.56 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-CR-7399-01 6 43749750 43749750 G A VEGFA Silent p.T381T 0.15 TCGA-CR-7399-01 6 46107690 46107690 C G ENPP4 Missense_Mutation p.Q124E 0.21 tolerated(0.1) benign(0.012) TCGA-CR-7399-01 6 56371281 56371281 T A DST Missense_Mutation p.E3852V 0.13 probably_damaging(0.98) TCGA-CR-7399-01 6 76728538 76728538 C A IMPG1 Missense_Mutation p.R235M 0.25 tolerated(0.21) possibly_damaging(0.634) TCGA-CR-7399-01 7 100086152 100086152 G A NYAP1 Missense_Mutation p.E270K 0.15 deleterious(0.01) benign(0.247) TCGA-CR-7399-01 7 110763775 110763775 C T LRRN3 Missense_Mutation p.A316V 0.30 tolerated(0.94) probably_damaging(1) TCGA-CR-7399-01 7 112462106 112462106 C T C7orf60 Missense_Mutation p.R304H 0.29 deleterious(0) probably_damaging(0.997) TCGA-CR-7399-01 7 124482972 124482972 A G POT1 Missense_Mutation p.I351T 0.14 deleterious(0) benign(0.124) TCGA-CR-7399-01 7 142231787 142231787 G - TRBV10-1 Frame_Shift_Del p.Q44Rfs*19 0.18 TCGA-CR-7399-01 7 143771537 143771537 C A OR2A25 Missense_Mutation p.S75R 0.45 deleterious(0) benign(0.032) TCGA-CR-7399-01 7 144098460 144098460 G T NOBOX Missense_Mutation p.R175S 0.19 tolerated(0.69) benign(0.011) TCGA-CR-7399-01 7 149481149 149481149 C G SSPO RNA 0.17 TCGA-CR-7399-01 7 150174635 150174635 C T GIMAP8 Missense_Mutation p.R589C 0.15 tolerated(0.17) benign(0.381) TCGA-CR-7399-01 7 154875975 154875975 C G HTR5A Silent p.A284A 0.33 TCGA-CR-7399-01 7 30706892 30706892 C T CRHR2 Nonsense_Mutation p.W116* 0.11 TCGA-CR-7399-01 7 62752139 62752139 C A ZNF733P RNA 0.38 TCGA-CR-7399-01 7 81386541 81386541 C T HGF Missense_Mutation p.C149Y 0.31 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 7 86493676 86493676 G A GRM3 3'UTR 0.17 TCGA-CR-7399-01 7 86569411 86569411 T G KIAA1324L Silent p.T254T 0.19 TCGA-CR-7399-01 7 91694575 91694575 A G AKAP9 Missense_Mutation p.K2003R 0.51 possibly_damaging(0.777) TCGA-CR-7399-01 7 99526840 99526840 C A GJC3 Missense_Mutation p.W135L 0.14 tolerated(0.14) probably_damaging(0.998) TCGA-CR-7399-01 7 99565930 99565930 C T AZGP1 Nonsense_Mutation p.W154* 0.15 TCGA-CR-7399-01 7 99699233 99699233 G A AP4M1 5'UTR 0.18 TCGA-CR-7399-01 8 100874157 100874157 T A VPS13B Missense_Mutation p.L3758Q 0.30 deleterious(0) probably_damaging(0.928) TCGA-CR-7399-01 8 105463544 105463544 C T DPYS Missense_Mutation p.R118Q 0.15 deleterious(0.04) possibly_damaging(0.731) TCGA-CR-7399-01 8 113243843 113243843 C A CSMD3 Nonsense_Mutation p.G3587* 0.10 TCGA-CR-7399-01 8 131916241 131916241 T C ADCY8 Missense_Mutation p.Y563C 0.14 deleterious(0) probably_damaging(0.984) TCGA-CR-7399-01 8 133141603 133141603 G A KCNQ3 Missense_Mutation p.T842M 0.11 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 8 133142133 133142133 C A KCNQ3 Silent p.S665S 0.12 TCGA-CR-7399-01 8 136594270 136594270 A T KHDRBS3 Missense_Mutation p.Y254F 0.09 tolerated(0.15) probably_damaging(0.987) TCGA-CR-7399-01 8 139323163 139323163 C T FAM135B Silent p.G26G 0.15 TCGA-CR-7399-01 8 142188188 142188188 C T DENND3 Missense_Mutation p.A830V 0.24 deleterious(0) probably_damaging(0.999) TCGA-CR-7399-01 8 143994781 143994781 G T CYP11B2 Silent p.A347A 0.14 TCGA-CR-7399-01 8 146054432 146054432 C T ZNF7 5'UTR 0.26 TCGA-CR-7399-01 8 1497072 1497072 G T DLGAP2 Silent p.V71V 0.17 TCGA-CR-7399-01 8 21957263 21957263 G C FAM160B2 Silent p.L400L 0.23 TCGA-CR-7399-01 8 24334017 24334017 G A ADAM7 Missense_Mutation p.M235I 0.23 deleterious(0.01) possibly_damaging(0.755) TCGA-CR-7399-01 8 24358343 24358343 C T ADAM7 Silent p.V681V 0.17 TCGA-CR-7399-01 8 26365845 26365845 C T PNMA2 Missense_Mutation p.A143T 0.25 tolerated(0.21) benign(0.048) TCGA-CR-7399-01 8 26628171 26628171 G T ADRA1A Missense_Mutation p.P299H 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-CR-7399-01 8 28413285 28413285 G - FZD3 Frame_Shift_Del p.E529Nfs*9 0.20 TCGA-CR-7399-01 8 38258566 38258566 G A LETM2 Missense_Mutation p.D280N 0.41 deleterious(0) probably_damaging(1) TCGA-CR-7399-01 8 39022556 39022556 C T ADAM32 Missense_Mutation p.T225I 0.25 deleterious(0.03) benign(0.071) TCGA-CR-7399-01 8 6378820 6378820 G A ANGPT2 Silent p.I226I 0.16 TCGA-CR-7399-01 8 68044264 68044264 G A CSPP1 Silent p.P587P 0.16 TCGA-CR-7399-01 8 73480118 73480118 G T KCNB2 Missense_Mutation p.W50L 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-CR-7399-01 8 79598715 79598715 A G ZC2HC1A Missense_Mutation p.K75R 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-CR-7399-01 8 95272561 95272561 G T GEM Missense_Mutation p.S57R 0.10 tolerated(0.06) benign(0.016) TCGA-CR-7399-01 8 97156802 97156802 C T GDF6 Missense_Mutation p.G453S 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-CR-7399-01 9 118973930 118973930 T A PAPPA Nonsense_Mutation p.L546* 0.23 TCGA-CR-7399-01 9 125438052 125438052 T C OR1L3 Missense_Mutation p.I215T 0.19 tolerated(0.13) benign(0.008) TCGA-CR-7399-01 9 21187364 21187364 C A IFNA4 Missense_Mutation p.R56I 0.41 deleterious(0.01) possibly_damaging(0.848) TCGA-CR-7399-01 9 36083451 36083451 C T RECK Missense_Mutation p.P177S 0.14 tolerated(0.5) benign(0.031) TCGA-CR-7399-01 9 37518331 37518331 T A FBXO10 Missense_Mutation p.T769S 0.47 tolerated(0.06) possibly_damaging(0.684) TCGA-CR-7399-01 9 72521129 72521129 G A C9orf135 3'UTR 0.44 TCGA-CR-7399-01 9 73151901 73151901 T A TRPM3 Silent p.L1364L 0.23 TCGA-CR-7399-01 X 100912388 100912388 T C ARMCX2 Missense_Mutation p.I63V 0.19 tolerated_low_confidence(0.05) probably_damaging(0.965) TCGA-CR-7399-01 X 102529495 102529495 G C TCEAL5 5'UTR 0.16 TCGA-CR-7399-01 X 103294873 103294873 G C H2BFM Silent p.V110V 0.20 TCGA-CR-7399-01 X 110644217 110644217 C A DCX Splice_Site p.X316_splice 0.20 TCGA-CR-7399-01 X 114540770 114540770 G T LUZP4 Nonsense_Mutation p.E115* 0.15 TCGA-CR-7399-01 X 123195710 123195710 G T STAG2 Missense_Mutation p.G542W 0.14 deleterious(0) probably_damaging(0.996) TCGA-CR-7399-01 X 129215357 129215357 G T ELF4 5'UTR 0.16 TCGA-CR-7399-01 X 129629927 129629927 T G RP1-274L7.1 Intron 0.19 TCGA-CR-7399-01 X 133087117 133087117 C A GPC3 Missense_Mutation p.E99D 0.15 tolerated(0.2) benign(0.356) TCGA-CR-7399-01 X 138708352 138708352 C A MCF2 Missense_Mutation p.Q289H 0.13 deleterious(0) benign(0.104) TCGA-CR-7399-01 X 140984393 140984393 C T MAGEC3 Intron 0.15 TCGA-CR-7399-01 X 14882732 14882732 C G FANCB Missense_Mutation p.V301L 0.17 deleterious(0) possibly_damaging(0.799) TCGA-CR-7399-01 X 151284231 151284231 C T RP11-1007I13.4 RNA 0.15 TCGA-CR-7399-01 X 153631469 153631469 G T DNASE1L1 Missense_Mutation p.D196E 0.25 tolerated(0.4) benign(0.006) TCGA-CR-7399-01 X 153695707 153695707 C T PLXNA3 Missense_Mutation p.R1112C 0.12 deleterious(0.01) probably_damaging(0.959) TCGA-CR-7399-01 X 153906365 153906365 G T GAB3 3'UTR 0.20 TCGA-CR-7399-01 X 154736700 154736700 G T TMLHE Missense_Mutation p.A285E 0.27 tolerated(0.36) benign(0.063) TCGA-CR-7399-01 X 18638053 18638053 G T CDKL5 Missense_Mutation p.R781S 0.35 deleterious_low_confidence(0) benign(0.004) TCGA-CR-7399-01 X 18913306 18913306 G A PHKA2 Missense_Mutation p.H1096Y 0.24 tolerated(0.13) probably_damaging(0.962) TCGA-CR-7399-01 X 26158123 26158123 C A MAGEB18 Missense_Mutation p.H341N 0.25 tolerated(0.25) benign(0.133) TCGA-CR-7399-01 X 29973487 29973487 G C IL1RAPL1 Missense_Mutation p.L547F 0.26 tolerated(0.17) benign(0.423) TCGA-CR-7399-01 X 30269597 30269597 C A MAGEB1 Silent p.A329A 0.18 TCGA-CR-7399-01 X 32366523 32366523 C T DMD Missense_Mutation p.M1816I 0.25 benign(0.043) TCGA-CR-7399-01 X 54978369 54978369 C G PFKFB1 Missense_Mutation p.G272A 0.40 probably_damaging(1) TCGA-CR-7399-01 X 63563520 63563520 T G MTMR8 Missense_Mutation p.I316L 0.21 tolerated(0.16) benign(0.011) TCGA-CR-7399-01 X 69262102 69262102 T C AWAT2 Missense_Mutation p.Y261C 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-CR-7399-01 X 77393354 77393354 T C TAF9B Silent p.K99K 0.26 TCGA-CR-7399-01 X 79999597 79999597 C G BRWD3 Missense_Mutation p.W249C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-7399-01 X 85969660 85969660 C A DACH2 Silent p.A347A 0.11 TCGA-CR-7401-01 10 15254851 15254851 C T FAM171A1 3'UTR 0.16 TCGA-CR-7401-01 11 101323814 101323814 C G TRPC6 Missense_Mutation p.D890H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CR-7401-01 11 106810420 106810420 A G GUCY1A2 Silent p.C324C 0.26 TCGA-CR-7401-01 11 132527154 132527154 G A OPCML Silent p.Y76Y 0.14 TCGA-CR-7401-01 11 17126756 17126756 C T PIK3C2A Nonsense_Mutation p.W1214* 0.18 TCGA-CR-7401-01 11 18028145 18028145 C A SERGEF Missense_Mutation p.M115I 0.14 tolerated(1) benign(0.002) TCGA-CR-7401-01 11 60183772 60183772 A T MS4A14 Missense_Mutation p.N477I 0.17 deleterious(0) probably_damaging(0.94) TCGA-CR-7401-01 11 66039546 66039546 G C RAB1B Intron 0.18 TCGA-CR-7401-01 11 67176566 67176566 C T TBC1D10C Missense_Mutation p.P319S 0.22 tolerated(0.29) benign(0.005) TCGA-CR-7401-01 12 102028349 102028349 C T MYBPC1 Missense_Mutation p.P167S 0.08 tolerated(0.69) benign(0.044) TCGA-CR-7401-01 12 109530419 109530419 C T ALKBH2 Missense_Mutation p.R58Q 0.14 tolerated(0.96) benign(0) TCGA-CR-7401-01 12 130927037 130927037 G A RIMBP2 Missense_Mutation p.P270L 0.12 tolerated(0.12) benign(0.005) TCGA-CR-7401-01 12 133732617 133732617 A T ZNF10 Missense_Mutation p.E262V 0.09 deleterious(0) probably_damaging(0.999) TCGA-CR-7401-01 12 19413942 19413942 C G PLEKHA5 Silent p.L199L 0.15 TCGA-CR-7401-01 12 43944807 43944807 C T ADAMTS20 Missense_Mutation p.D120N 0.14 tolerated(0.17) benign(0.065) TCGA-CR-7401-01 12 7966855 7966855 C T SLC2A14 3'UTR 0.14 TCGA-CR-7401-01 13 29252224 29252224 A G POMP Silent p.K137K 0.20 TCGA-CR-7401-01 13 38211559 38211559 C T TRPC4 Silent p.P810P 0.12 TCGA-CR-7401-01 14 23586606 23586606 T A CEBPE 3'UTR 0.27 TCGA-CR-7401-01 14 24629560 24629560 C T RNF31 Missense_Mutation p.R1037C 0.17 tolerated(0.05) benign(0.258) TCGA-CR-7401-01 14 47351384 47351384 T C MDGA2 Missense_Mutation p.N760S 0.11 tolerated(0.38) benign(0.16) TCGA-CR-7401-01 14 52481904 52481904 C T NID2 Missense_Mutation p.V1040M 0.16 deleterious(0) probably_damaging(0.997) TCGA-CR-7401-01 14 75376271 75376271 G A RPS6KL1 Silent p.P415P 0.21 TCGA-CR-7401-01 15 79054873 79054873 C T ADAMTS7 Missense_Mutation p.R1592H 0.19 deleterious(0) probably_damaging(1) TCGA-CR-7401-01 15 90226612 90226612 C T PEX11A Missense_Mutation p.R247H 0.23 tolerated_low_confidence(0.19) possibly_damaging(0.483) TCGA-CR-7401-01 16 30750152 30750152 C T SRCAP Silent p.L2931L 0.14 TCGA-CR-7401-01 16 3712857 3712857 G A TRAP1 Intron 0.12 TCGA-CR-7401-01 16 67472541 67472543 AGA - ATP6V0D1 In_Frame_Del p.F315del 0.12 TCGA-CR-7401-01 16 67693460 67693460 G A ACD Silent p.P217P 0.08 TCGA-CR-7401-01 16 67862089 67862089 G A CENPT 3'UTR 0.17 TCGA-CR-7401-01 17 35591984 35591984 C T ACACA Missense_Mutation p.R1051Q 0.15 deleterious(0.01) possibly_damaging(0.465) TCGA-CR-7401-01 17 39594347 39594347 G T KRT38 Nonsense_Mutation p.C413* 0.13 TCGA-CR-7401-01 17 42083545 42083545 G A NAGS Silent p.L285L 0.23 TCGA-CR-7401-01 17 5486116 5486116 G C NLRP1 Missense_Mutation p.P108A 0.19 deleterious(0.01) possibly_damaging(0.505) TCGA-CR-7401-01 17 60501347 60501347 G T METTL2A Silent p.P28P 0.13 TCGA-CR-7401-01 17 7578177 7578177 C T TP53 Silent p.E224E 0.14 TCGA-CR-7401-01 17 7842957 7842957 C T CNTROB Missense_Mutation p.R352W 0.20 deleterious(0) possibly_damaging(0.471) TCGA-CR-7401-01 18 21330961 21330961 C T LAMA3 Missense_Mutation p.A255V 0.28 possibly_damaging(0.512) TCGA-CR-7401-01 18 31319491 31319491 C G ASXL3 Missense_Mutation p.S708C 0.14 probably_damaging(0.959) TCGA-CR-7401-01 19 31769049 31769049 G A TSHZ3 Silent p.I550I 0.08 TCGA-CR-7401-01 19 42818774 42818774 G A TMEM145 Missense_Mutation p.A95T 0.09 tolerated(0.16) benign(0.013) TCGA-CR-7401-01 19 47823557 47823557 C T C5AR1 Missense_Mutation p.R175W 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7401-01 19 52394087 52394087 C A ZNF649 Missense_Mutation p.E434D 0.15 tolerated(0.54) benign(0.041) TCGA-CR-7401-01 19 53958193 53958193 T C ZNF761 RNA 0.13 TCGA-CR-7401-01 19 54876556 54876556 G T LAIR1 5'UTR 0.27 TCGA-CR-7401-01 19 56160371 56160371 C T CCDC106 5'UTR 0.12 TCGA-CR-7401-01 19 57037304 57037304 G C ZNF471 Missense_Mutation p.G623A 0.17 deleterious(0.02) probably_damaging(0.987) TCGA-CR-7401-01 19 57911175 57911175 C G ZNF548 Missense_Mutation p.S519C 0.17 tolerated(1) benign(0.001) TCGA-CR-7401-01 19 9066782 9066782 C A MUC16 Silent p.A6888A 0.17 TCGA-CR-7401-01 1 109642857 109642857 C T TMEM167B 3'Flank 0.24 TCGA-CR-7401-01 1 155924729 155924729 C G ARHGEF2 Missense_Mutation p.E583Q 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-CR-7401-01 1 200550381 200550381 G A KIF14 Nonsense_Mutation p.Q1095* 0.11 TCGA-CR-7401-01 1 206649530 206649530 G A IKBKE Missense_Mutation p.G122D 0.07 deleterious(0) probably_damaging(0.99) TCGA-CR-7401-01 1 235940477 235940477 G A LYST Silent p.S1782S 0.19 TCGA-CR-7401-01 1 248636866 248636866 C T OR2T3 Missense_Mutation p.A72V 0.20 deleterious(0) benign(0.058) TCGA-CR-7401-01 1 35484994 35484994 G A ZMYM6 Silent p.L130L 0.24 TCGA-CR-7401-01 1 62263043 62263043 C G INADL Missense_Mutation p.L449V 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-CR-7401-01 1 77558060 77558061 - A PIGK Frame_Shift_Ins p.*396L 0.12 TCGA-CR-7401-01 20 47296246 47296246 G A PREX1 Silent p.F494F 0.14 TCGA-CR-7401-01 20 48130868 48130868 G A PTGIS Missense_Mutation p.A307V 0.12 tolerated(0.15) benign(0.236) TCGA-CR-7401-01 21 43287419 43287419 C T PRDM15 Silent p.A203A 0.14 TCGA-CR-7401-01 22 31535944 31535944 C T PLA2G3 Missense_Mutation p.A133T 0.07 tolerated(0.07) benign(0.367) TCGA-CR-7401-01 22 40825661 40825661 C T MKL1 Missense_Mutation p.V84M 0.08 deleterious(0) probably_damaging(0.996) TCGA-CR-7401-01 22 45782901 45782901 C T SMC1B Missense_Mutation p.R586K 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-CR-7401-01 2 113331325 113331325 C T POLR1B Nonsense_Mutation p.Q820* 0.16 TCGA-CR-7401-01 2 171716453 171716453 A C GAD1 3'UTR 0.33 TCGA-CR-7401-01 2 212495211 212495211 G A ERBB4 Silent p.A685A 0.14 TCGA-CR-7401-01 2 218713727 218713727 C T TNS1 Missense_Mutation p.G380R 0.20 deleterious(0.02) benign(0.413) TCGA-CR-7401-01 2 228476326 228476326 C T C2orf83 Silent p.R79R 0.21 TCGA-CR-7401-01 2 231264899 231264899 G A SP140L Missense_Mutation p.D419N 0.21 deleterious(0.03) probably_damaging(1) TCGA-CR-7401-01 2 27121505 27121505 C T DPYSL5 Silent p.G46G 0.18 TCGA-CR-7401-01 2 56420319 56420319 C T CCDC85A Silent p.H328H 0.09 TCGA-CR-7401-01 2 90108828 90108828 C G IGKV6D-41 Silent p.L31L 0.16 TCGA-CR-7401-01 3 150264529 150264529 G A EIF2A 5'UTR 0.29 TCGA-CR-7401-01 3 178921549 178921549 T G PIK3CA Missense_Mutation p.V344G 0.16 deleterious(0) probably_damaging(0.987) TCGA-CR-7401-01 3 183041051 183041051 C T MCF2L2 Missense_Mutation p.R192H 0.22 tolerated(0.2) benign(0.022) TCGA-CR-7401-01 3 44399311 44399311 G C TCAIM Missense_Mutation p.L36F 0.19 deleterious(0) probably_damaging(1) TCGA-CR-7401-01 3 50392907 50392907 T C TMEM115 Missense_Mutation p.D308G 0.19 tolerated(0.07) benign(0.202) TCGA-CR-7401-01 3 89478308 89478308 T C EPHA3 Silent p.S709S 0.28 TCGA-CR-7401-01 3 96706230 96706230 A G EPHA6 Silent p.V169V 0.11 TCGA-CR-7401-01 4 119219987 119219987 T C PRSS12 Missense_Mutation p.I580V 0.15 tolerated(0.5) benign(0.008) TCGA-CR-7401-01 4 126242740 126242740 A G FAT4 Missense_Mutation p.E1725G 0.22 benign(0.334) TCGA-CR-7401-01 4 126412581 126412581 C A FAT4 Silent p.P4868P 0.27 TCGA-CR-7401-01 4 6058428 6058428 T C JAKMIP1 Missense_Mutation p.E568G 0.21 deleterious(0) probably_damaging(0.973) TCGA-CR-7401-01 4 69203343 69203343 G A YTHDC1 Missense_Mutation p.R136W 0.10 deleterious_low_confidence(0) unknown(0) TCGA-CR-7401-01 4 72215743 72215743 A T SLC4A4 Silent p.G168G 0.16 TCGA-CR-7401-01 5 132652310 132652310 C T FSTL4 Silent p.L148L 0.10 TCGA-CR-7401-01 5 140731697 140731697 A C PCDHGB1 Missense_Mutation p.T624P 0.12 deleterious(0) probably_damaging(1) TCGA-CR-7401-01 5 54320494 54320494 A T GZMK Missense_Mutation p.N24I 0.26 tolerated(0.15) benign(0.074) TCGA-CR-7401-01 6 111697700 111697700 C T REV3L Missense_Mutation p.E620K 0.16 tolerated(0.05) benign(0.17) TCGA-CR-7401-01 6 129687384 129687384 G A LAMA2 Missense_Mutation p.G1580S 0.10 deleterious(0.01) probably_damaging(1) TCGA-CR-7401-01 6 132891604 132891604 T C TAAR6 Silent p.F48F 0.13 TCGA-CR-7401-01 6 26273547 26273547 G A HIST1H2BI Missense_Mutation p.G115D 0.20 deleterious_low_confidence(0.01) benign(0.247) TCGA-CR-7401-01 6 36020563 36020563 C T MAPK14 Silent p.T68T 0.18 TCGA-CR-7401-01 6 99282682 99282682 G A POU3F2 5'UTR 0.19 TCGA-CR-7401-01 7 106508732 106508732 C T PIK3CG Silent p.G242G 0.14 TCGA-CR-7401-01 7 132192500 132192500 G A PLXNA4 Missense_Mutation p.A318V 0.14 deleterious(0) benign(0.082) TCGA-CR-7401-01 7 1477796 1477796 G A MICALL2 Missense_Mutation p.R750W 0.38 deleterious(0) probably_damaging(0.91) TCGA-CR-7401-01 7 88963951 88963951 A G ZNF804B Missense_Mutation p.Y552C 0.09 tolerated(0.19) benign(0.02) TCGA-CR-7401-01 7 99074083 99074083 T G ZNF789 Missense_Mutation p.F2V 0.11 deleterious_low_confidence(0.01) benign(0.039) TCGA-CR-7401-01 8 110587403 110587403 C T SYBU Missense_Mutation p.R575K 0.07 tolerated(1) benign(0.003) TCGA-CR-7401-01 8 11996173 11996173 G T USP17L2 Missense_Mutation p.Q33K 0.14 tolerated(0.92) benign(0.083) TCGA-CR-7401-01 8 133622493 133622493 G A LRRC6 Silent p.V353V 0.14 TCGA-CR-7401-01 8 26238106 26238106 G A BNIP3L 5'Flank 0.09 TCGA-CR-7401-01 8 59412709 59412709 G A CYP7A1 5'UTR 0.29 TCGA-CR-7401-01 8 69031723 69031723 A G PREX2 Missense_Mutation p.S1160G 0.47 tolerated(1) benign(0) TCGA-CR-7401-01 8 98290036 98290036 C T TSPYL5 Missense_Mutation p.A13T 0.13 tolerated(0.13) unknown(0) TCGA-CR-7401-01 9 125154466 125154466 A G PTGS1 Splice_Site p.X482_splice 0.29 TCGA-CR-7401-01 9 132637882 132637882 C T USP20 Silent p.V754V 0.30 TCGA-CR-7401-01 9 139879239 139879239 A G LCNL1 Missense_Mutation p.K91E 0.44 deleterious(0.04) probably_damaging(0.921) TCGA-CR-7401-01 9 33264959 33264959 G T CHMP5 5'UTR 0.18 TCGA-CR-7401-01 9 8499728 8499728 A G PTPRD Silent p.Y747Y 0.15 TCGA-CR-7401-01 X 24024381 24024381 C T KLHL15 Missense_Mutation p.G144S 0.44 tolerated_low_confidence(0.81) benign(0.001) TCGA-CR-7401-01 X 51640125 51640125 G A MAGED1 Silent p.Q514Q 0.17 TCGA-CR-7401-01 X 63579362 63579362 C T MTMR8 Missense_Mutation p.A24T 0.42 tolerated(0.26) benign(0.165) TCGA-CR-7402-01 10 101190362 101190362 G C GOT1 5'Flank 0.24 TCGA-CR-7402-01 10 101544522 101544522 T A ABCC2 Missense_Mutation p.L64H 0.33 deleterious(0.02) benign(0.072) TCGA-CR-7402-01 10 103912013 103912013 A G NOLC1 5'UTR 0.47 TCGA-CR-7402-01 10 103912064 103912064 G C NOLC1 5'UTR 0.24 TCGA-CR-7402-01 10 103988898 103988898 A G ELOVL3 Silent p.E234E 0.26 TCGA-CR-7402-01 10 104142155 104142155 G T GBF1 3'UTR 0.33 TCGA-CR-7402-01 10 112647635 112647635 A T PDCD4 Missense_Mutation p.R256S 0.32 tolerated(0.06) benign(0.142) TCGA-CR-7402-01 10 115608754 115608754 A G DCLRE1A Missense_Mutation p.Y704H 0.33 deleterious(0) probably_damaging(0.95) TCGA-CR-7402-01 10 115636695 115636695 G - NHLRC2 Frame_Shift_Del p.V250Sfs*35 0.20 TCGA-CR-7402-01 10 116417997 116417997 G - ABLIM1 5'UTR 0.23 TCGA-CR-7402-01 10 117075142 117075142 G A ATRNL1 Missense_Mutation p.R978Q 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-CR-7402-01 10 118957144 118957144 G T KCNK18 Missense_Mutation p.V49F 0.24 deleterious(0.05) benign(0.362) TCGA-CR-7402-01 10 124266322 124266322 G T HTRA1 Missense_Mutation p.S298I 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 10 124339216 124339216 G A DMBT1 Missense_Mutation p.A268T 0.29 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 10 124457725 124457725 C T C10orf120 Missense_Mutation p.G178R 0.28 tolerated(1) benign(0.003) TCGA-CR-7402-01 10 124708266 124708266 T A C10orf88 Missense_Mutation p.R183W 0.47 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 10 129224216 129224216 G A DOCK1 Missense_Mutation p.E1598K 0.30 tolerated(0.06) benign(0.195) TCGA-CR-7402-01 10 134660493 134660493 C T TTC40 Silent p.V2070V 0.28 TCGA-CR-7402-01 10 16946023 16946023 G T CUBN Missense_Mutation p.H2668Q 0.30 tolerated(0.15) benign(0.344) TCGA-CR-7402-01 10 17126346 17126346 T A CUBN Missense_Mutation p.Q742L 0.33 tolerated(0.29) benign(0.002) TCGA-CR-7402-01 10 17168764 17168764 T A CUBN Missense_Mutation p.Q128L 0.39 deleterious(0.01) benign(0.047) TCGA-CR-7402-01 10 18690910 18690910 G T CACNB2 Missense_Mutation p.D91Y 0.16 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 10 21108419 21108419 C T NEBL Silent p.K663K 0.22 TCGA-CR-7402-01 10 25279433 25279433 T C ENKUR Missense_Mutation p.M185V 0.32 deleterious(0) possibly_damaging(0.513) TCGA-CR-7402-01 10 27403474 27403474 T C YME1L1 Silent p.E718E 0.19 TCGA-CR-7402-01 10 30915774 30915774 C G LYZL2 Missense_Mutation p.R70P 0.31 deleterious(0) probably_damaging(0.948) TCGA-CR-7402-01 10 31815599 31815599 G T ZEB1 Splice_Site p.X929_splice 0.23 TCGA-CR-7402-01 10 34666965 34666965 A T PARD3 Missense_Mutation p.V490E 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 10 38121829 38121829 C A ZNF248 Missense_Mutation p.G152C 0.33 deleterious(0.03) possibly_damaging(0.754) TCGA-CR-7402-01 10 38242024 38242024 T A ZNF25 Silent p.I134I 0.29 TCGA-CR-7402-01 10 43595965 43595965 G T RET Missense_Mutation p.Q44H 0.32 deleterious_low_confidence(0) possibly_damaging(0.712) TCGA-CR-7402-01 10 48438504 48438504 G A GDF10 Silent p.P69P 0.35 TCGA-CR-7402-01 10 49379207 49379207 C A FRMPD2 Nonsense_Mutation p.G1090* 0.18 TCGA-CR-7402-01 10 49431169 49431169 A T FRMPD2 Missense_Mutation p.L438H 0.33 deleterious(0) probably_damaging(0.992) TCGA-CR-7402-01 10 50667067 50667067 C G ERCC6 Missense_Mutation p.D1426H 0.26 deleterious(0) possibly_damaging(0.823) TCGA-CR-7402-01 10 50966454 50966454 T A OGDHL Missense_Mutation p.N62I 0.24 deleterious(0) benign(0.323) TCGA-CR-7402-01 10 52575947 52575947 G A A1CF Silent p.G328G 0.17 TCGA-CR-7402-01 10 55569197 55569197 G T PCDH15 Missense_Mutation p.T472K 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-CR-7402-01 10 56106245 56106245 C A PCDH15 Splice_Site p.X159_splice 0.30 TCGA-CR-7402-01 10 62039399 62039399 T G ANK3 Splice_Site p.X39_splice 0.28 TCGA-CR-7402-01 10 69961674 69961674 C A MYPN Silent p.R1194R 0.29 TCGA-CR-7402-01 10 73550138 73550138 A G CDH23 Missense_Mutation p.Q2011R 0.23 tolerated(0.75) benign(0.065) TCGA-CR-7402-01 10 75558105 75558105 C A ZSWIM8 Missense_Mutation p.S1357Y 0.25 deleterious(0.03) possibly_damaging(0.885) TCGA-CR-7402-01 10 76788996 76788996 G T KAT6B Nonsense_Mutation p.E1472* 0.23 TCGA-CR-7402-01 10 78729807 78729807 G C KCNMA1 Nonsense_Mutation p.S704* 0.20 TCGA-CR-7402-01 10 78846339 78846339 G T KCNMA1 Missense_Mutation p.N449K 0.37 deleterious(0.04) benign(0.081) TCGA-CR-7402-01 10 84745231 84745231 G C NRG3 Missense_Mutation p.S654T 0.38 deleterious_low_confidence(0.02) benign(0.295) TCGA-CR-7402-01 10 85944465 85944465 C A C10orf99 Nonsense_Mutation p.C63* 0.31 TCGA-CR-7402-01 10 90762893 90762893 T A FAS Silent p.T46T 0.28 TCGA-CR-7402-01 10 93601155 93601155 C A TNKS2 Missense_Mutation p.H597N 0.23 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 10 96535277 96535277 G C CYP2C19 Missense_Mutation p.E154D 0.25 deleterious(0.04) benign(0.069) TCGA-CR-7402-01 11 101344380 101344380 C G TRPC6 Silent p.L623L 0.22 TCGA-CR-7402-01 11 1017714 1017714 G T MUC6 Nonsense_Mutation p.S1696* 0.07 TCGA-CR-7402-01 11 101833302 101833302 G A KIAA1377 Silent p.K512K 0.19 TCGA-CR-7402-01 11 101834193 101834193 T C KIAA1377 Silent p.N809N 0.21 TCGA-CR-7402-01 11 102477375 102477375 G C MMP20 Missense_Mutation p.L282V 0.26 tolerated(0.34) benign(0.001) TCGA-CR-7402-01 11 103908508 103908508 A G DDI1 Missense_Mutation p.I320V 0.35 tolerated(0.68) benign(0.014) TCGA-CR-7402-01 11 105925058 105925058 C A KBTBD3 Missense_Mutation p.D120Y 0.21 deleterious(0.01) possibly_damaging(0.812) TCGA-CR-7402-01 11 107224343 107224343 C A CWF19L2 Missense_Mutation p.E664D 0.31 deleterious(0.04) benign(0.139) TCGA-CR-7402-01 11 113934661 113934661 C G ZBTB16 Silent p.L213L 0.31 TCGA-CR-7402-01 11 114401134 114401134 C T NXPE1 Missense_Mutation p.G57D 0.24 deleterious(0.04) benign(0.443) TCGA-CR-7402-01 11 115080341 115080341 G T CADM1 Missense_Mutation p.T344N 0.25 tolerated(0.53) possibly_damaging(0.759) TCGA-CR-7402-01 11 117303127 117303127 G C DSCAML1 Missense_Mutation p.P1767R 0.30 tolerated(0.07) possibly_damaging(0.578) TCGA-CR-7402-01 11 117332289 117332289 C A DSCAML1 Missense_Mutation p.V1157F 0.28 deleterious(0) probably_damaging(0.993) TCGA-CR-7402-01 11 118347536 118347536 C A KMT2A Nonsense_Mutation p.S1058* 0.24 TCGA-CR-7402-01 11 119290994 119290994 G T THY1 Missense_Mutation p.P47H 0.27 deleterious(0) probably_damaging(0.985) TCGA-CR-7402-01 11 120180221 120180221 C A POU2F3 Silent p.R334R 0.32 TCGA-CR-7402-01 11 120998532 120998532 G T TECTA Missense_Mutation p.D616Y 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-CR-7402-01 11 121495940 121495940 G C SORL1 Missense_Mutation p.Q2106H 0.24 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 11 123624645 123624645 T A OR6X1 Missense_Mutation p.E194D 0.28 deleterious(0.01) possibly_damaging(0.819) TCGA-CR-7402-01 11 124266529 124266529 G A OR8B3 Missense_Mutation p.T240I 0.19 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-CR-7402-01 11 124310451 124310451 G A OR8B8 Silent p.Y177Y 0.30 TCGA-CR-7402-01 11 124756439 124756439 G C ROBO4 Missense_Mutation p.H905Q 0.19 deleterious(0.01) benign(0.227) TCGA-CR-7402-01 11 124765699 124765699 C G ROBO4 Silent p.A263A 0.44 TCGA-CR-7402-01 11 130773227 130773227 T C SNX19 Silent p.L832L 0.23 TCGA-CR-7402-01 11 133794770 133794770 G T IGSF9B Silent p.A688A 0.22 TCGA-CR-7402-01 11 18472708 18472708 A T LDHC 3'UTR 0.34 TCGA-CR-7402-01 11 18637522 18637522 G T SPTY2D1 Missense_Mutation p.P100H 0.38 deleterious(0) possibly_damaging(0.893) TCGA-CR-7402-01 11 20065574 20065574 T C NAV2 Silent p.S1008S 0.28 TCGA-CR-7402-01 11 20066745 20066745 G T NAV2 Missense_Mutation p.S1167I 0.21 deleterious(0) probably_damaging(0.997) TCGA-CR-7402-01 11 20066746 20066746 C T NAV2 Silent p.S1167S 0.21 TCGA-CR-7402-01 11 20623176 20623176 G T SLC6A5 Missense_Mutation p.V169L 0.26 deleterious(0.02) possibly_damaging(0.762) TCGA-CR-7402-01 11 22364872 22364872 T G SLC17A6 Missense_Mutation p.I140S 0.29 deleterious(0) possibly_damaging(0.776) TCGA-CR-7402-01 11 2335755 2335755 G C TSPAN32 Missense_Mutation p.G166A 0.21 tolerated(0.14) benign(0.152) TCGA-CR-7402-01 11 30033418 30033418 G A KCNA4 Missense_Mutation p.R270W 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-CR-7402-01 11 30557708 30557708 G T MPPED2 Missense_Mutation p.P48Q 0.29 tolerated(0.09) benign(0.088) TCGA-CR-7402-01 11 32705039 32705039 T A CCDC73 Intron 0.28 TCGA-CR-7402-01 11 3681167 3681167 C A ART1 Missense_Mutation p.R140S 0.36 deleterious(0.05) benign(0.38) TCGA-CR-7402-01 11 4615655 4615655 C T OR52I1 Silent p.A129A 0.30 TCGA-CR-7402-01 11 46822845 46822845 T C CKAP5 Missense_Mutation p.K330E 0.32 deleterious(0) probably_damaging(0.981) TCGA-CR-7402-01 11 5221348 5221348 G A OR51V1 Missense_Mutation p.R195C 0.22 deleterious(0.01) probably_damaging(0.952) TCGA-CR-7402-01 11 5443437 5443437 C A OR51Q1 Missense_Mutation p.Q3K 0.30 tolerated(0.78) benign(0.001) TCGA-CR-7402-01 11 55110887 55110887 T C OR4A16 Missense_Mutation p.Y71H 0.28 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-CR-7402-01 11 55322574 55322574 C T OR4C15 Silent p.F264F 0.24 TCGA-CR-7402-01 11 55419304 55419304 A G OR4S2 Missense_Mutation p.K309E 0.29 tolerated(0.06) benign(0) TCGA-CR-7402-01 11 55433323 55433323 C A OR4C6 Missense_Mutation p.S227R 0.27 deleterious_low_confidence(0.01) benign(0.208) TCGA-CR-7402-01 11 55433552 55433552 G T OR4C6 Nonsense_Mutation p.E304* 0.16 TCGA-CR-7402-01 11 55606250 55606250 C A OR5D16 Missense_Mutation p.T8K 0.33 tolerated(0.63) benign(0.007) TCGA-CR-7402-01 11 55607036 55607036 G T OR5D16 Missense_Mutation p.R270M 0.23 tolerated(0.14) benign(0.14) TCGA-CR-7402-01 11 55653181 55653181 T C TRIM51 Missense_Mutation p.C93R 0.10 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 11 55658953 55658953 G T TRIM51 Missense_Mutation p.V402F 0.25 deleterious(0) probably_damaging(0.952) TCGA-CR-7402-01 11 55890065 55890065 A G OR8H3 Missense_Mutation p.S73G 0.27 tolerated(0.21) benign(0.023) TCGA-CR-7402-01 11 55890212 55890212 C G OR8H3 Missense_Mutation p.R122G 0.27 deleterious(0.01) probably_damaging(0.966) TCGA-CR-7402-01 11 55944846 55944846 C A OR5J2 Missense_Mutation p.F251L 0.27 tolerated(0.15) benign(0.246) TCGA-CR-7402-01 11 55999944 55999944 A T OR5T2 Missense_Mutation p.Y240N 0.25 tolerated(0.11) benign(0.183) TCGA-CR-7402-01 11 56085963 56085963 T C OR8K3 Missense_Mutation p.F61L 0.04 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-CR-7402-01 11 56114379 56114379 C - OR8K1 Frame_Shift_Del p.P289Lfs*3 0.19 TCGA-CR-7402-01 11 56185379 56185379 A T OR5R1 Silent p.T110T 0.27 TCGA-CR-7402-01 11 56237806 56237806 G T OR5M3 Silent p.P56P 0.28 TCGA-CR-7402-01 11 56237807 56237807 G T OR5M3 Missense_Mutation p.P56H 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-CR-7402-01 11 56380247 56380247 G T OR5M1 Missense_Mutation p.H244Q 0.18 deleterious(0.01) probably_damaging(0.951) TCGA-CR-7402-01 11 56380486 56380486 G C OR5M1 Missense_Mutation p.H165D 0.33 tolerated(0.08) benign(0.297) TCGA-CR-7402-01 11 5758078 5758078 A G OR56B1 Missense_Mutation p.Y111C 0.26 deleterious(0.03) benign(0.299) TCGA-CR-7402-01 11 57799168 57799168 C A OR6Q1 Missense_Mutation p.H248Q 0.27 deleterious(0) probably_damaging(0.996) TCGA-CR-7402-01 11 57970690 57970690 T C OR1S2 Missense_Mutation p.I322V 0.34 tolerated(0.57) benign(0) TCGA-CR-7402-01 11 58714591 58714591 C A GLYATL1 Intron 0.33 TCGA-CR-7402-01 11 59282896 59282896 C - OR4D9 Frame_Shift_Del p.N172Mfs*27 0.22 TCGA-CR-7402-01 11 59829952 59829952 C A MS4A3 Silent p.I56I 0.27 TCGA-CR-7402-01 11 608998 608998 G T PHRF1 Missense_Mutation p.R1180L 0.24 deleterious(0.01) possibly_damaging(0.858) TCGA-CR-7402-01 11 60971616 60971616 C G PGA3 Missense_Mutation p.L32V 0.52 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 11 6191434 6191434 G T OR52B2 Silent p.V41V 0.22 TCGA-CR-7402-01 11 62289778 62289778 G C AHNAK Missense_Mutation p.I4037M 0.27 possibly_damaging(0.861) TCGA-CR-7402-01 11 62298691 62298691 C G AHNAK Missense_Mutation p.K1066N 0.17 probably_damaging(0.999) TCGA-CR-7402-01 11 62592507 62592507 C T STX5 Splice_Site p.X227_splice 0.08 TCGA-CR-7402-01 11 64022704 64022704 A T PLCB3 Splice_Site p.X130_splice 0.45 TCGA-CR-7402-01 11 64390225 64390225 C A NRXN2 Missense_Mutation p.Q1391H 0.16 deleterious(0) benign(0.02) TCGA-CR-7402-01 11 65088571 65088571 A G CDC42EP2 Missense_Mutation p.T68A 0.30 tolerated(0.49) benign(0.25) TCGA-CR-7402-01 11 66003368 66003368 G A PACS1 Splice_Site p.X736_splice 0.24 TCGA-CR-7402-01 11 66327436 66327436 C A CTSF 3'Flank 0.54 TCGA-CR-7402-01 11 66392979 66392979 A T RBM14 Silent p.P544P 0.28 TCGA-CR-7402-01 11 67206199 67206199 G T CORO1B Silent p.P429P 0.29 TCGA-CR-7402-01 11 68571469 68571469 C A CPT1A Missense_Mutation p.R185M 0.30 deleterious(0) probably_damaging(0.993) TCGA-CR-7402-01 11 74911282 74911282 A G SLCO2B1 Missense_Mutation p.N538S 0.17 deleterious(0.05) possibly_damaging(0.832) TCGA-CR-7402-01 11 7722005 7722005 G T OVCH2 Silent p.R247R 0.43 TCGA-CR-7402-01 11 82880066 82880066 C T PCF11 Nonsense_Mutation p.Q897* 0.33 TCGA-CR-7402-01 11 85375697 85375697 C A CREBZF Missense_Mutation p.V75L 0.33 deleterious_low_confidence(0.02) benign(0.007) TCGA-CR-7402-01 11 85420476 85420476 T A SYTL2 Missense_Mutation p.Q971L 0.27 deleterious(0.02) probably_damaging(0.974) TCGA-CR-7402-01 11 85436429 85436429 C A SYTL2 Silent p.V357V 0.27 TCGA-CR-7402-01 11 92531613 92531613 G C FAT3 Missense_Mutation p.V1812L 0.29 probably_damaging(0.919) TCGA-CR-7402-01 11 92533403 92533403 C G FAT3 Silent p.P2408P 0.32 TCGA-CR-7402-01 12 100928694 100928694 T C NR1H4 Missense_Mutation p.S219P 0.43 deleterious(0) probably_damaging(0.979) TCGA-CR-7402-01 12 101491468 101491468 C A ANO4 Missense_Mutation p.N595K 0.28 tolerated(0.29) benign(0.205) TCGA-CR-7402-01 12 101603614 101603614 G T SLC5A8 Silent p.R5R 0.35 TCGA-CR-7402-01 12 105600962 105600962 C G APPL2 Missense_Mutation p.E172D 0.28 tolerated(0.29) benign(0.046) TCGA-CR-7402-01 12 106466568 106466568 C G NUAK1 Silent p.T211T 0.29 TCGA-CR-7402-01 12 108029160 108029160 G C BTBD11 Silent p.S910S 0.32 TCGA-CR-7402-01 12 108686440 108686440 G - CMKLR1 Frame_Shift_Del p.M101Wfs*30 0.16 TCGA-CR-7402-01 12 108930562 108930562 C A SART3 Splice_Site p.X437_splice 0.35 TCGA-CR-7402-01 12 109530453 109530453 C A ALKBH2 Missense_Mutation p.G47W 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.599) TCGA-CR-7402-01 12 109650676 109650676 G C ACACB Silent p.L1095L 0.27 TCGA-CR-7402-01 12 109959106 109959106 G C UBE3B Missense_Mutation p.D744H 0.22 deleterious(0) possibly_damaging(0.694) TCGA-CR-7402-01 12 11034876 11034876 C A PRH1 Silent p.G153G 0.21 TCGA-CR-7402-01 12 112670875 112670875 C G HECTD4 Missense_Mutation p.R1831P 0.42 probably_damaging(0.93) TCGA-CR-7402-01 12 113307719 113307719 C A RPH3A Missense_Mutation p.P224H 0.31 tolerated(0.08) possibly_damaging(0.572) TCGA-CR-7402-01 12 113321158 113321158 C T RPH3A Missense_Mutation p.L463F 0.30 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 12 120114377 120114377 G T PRKAB1 Nonsense_Mutation p.E190* 0.30 TCGA-CR-7402-01 12 122825411 122825411 C T CLIP1 Silent p.R780R 0.30 TCGA-CR-7402-01 12 123780568 123780568 G A SBNO1 Missense_Mutation p.P1357S 0.30 tolerated(0.73) benign(0.001) TCGA-CR-7402-01 12 124383262 124383262 G T DNAH10 Nonsense_Mutation p.E3063* 0.20 TCGA-CR-7402-01 12 129442110 129442110 G - GLT1D1 Frame_Shift_Del p.V188Yfs*13 0.24 TCGA-CR-7402-01 12 130184929 130184929 G T TMEM132D Missense_Mutation p.H132N 0.33 deleterious(0.04) benign(0.091) TCGA-CR-7402-01 12 130831562 130831562 C A PIWIL1 Missense_Mutation p.P203H 0.31 deleterious(0) probably_damaging(0.982) TCGA-CR-7402-01 12 131466553 131466553 G A GPR133 Silent p.V145V 0.34 TCGA-CR-7402-01 12 132611101 132611101 A G RP13-977J11.5 RNA 0.27 TCGA-CR-7402-01 12 133225973 133225973 C A POLE Silent p.R1308R 0.24 TCGA-CR-7402-01 12 133234500 133234500 C T POLE Missense_Mutation p.R1111Q 0.29 deleterious(0.04) probably_damaging(0.984) TCGA-CR-7402-01 12 133257867 133257867 T A POLE Splice_Site p.X21_splice 0.30 TCGA-CR-7402-01 12 133732562 133732562 G A ZNF10 Missense_Mutation p.D244N 0.30 tolerated(0.5) benign(0.001) TCGA-CR-7402-01 12 133733348 133733348 A T ZNF10 Nonsense_Mutation p.K506* 0.21 TCGA-CR-7402-01 12 14796620 14796620 G T GUCY2C Silent p.S606S 0.18 TCGA-CR-7402-01 12 1755062 1755062 G T WNT5B Missense_Mutation p.G242W 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 12 18435606 18435606 T C PIK3C2G Silent p.H197H 0.26 TCGA-CR-7402-01 12 21349914 21349914 G A SLCO1B1 Nonsense_Mutation p.W254* 0.28 TCGA-CR-7402-01 12 22680700 22680700 C A C2CD5 Missense_Mutation p.A102S 0.26 tolerated(0.42) benign(0.053) TCGA-CR-7402-01 12 25343548 25343548 C G CASC1 Missense_Mutation p.K7N 0.31 deleterious(0.01) unknown(0) TCGA-CR-7402-01 12 29631793 29631793 T C OVCH1 Silent p.L348L 0.22 TCGA-CR-7402-01 12 31435582 31435582 G C FAM60A 3'UTR 0.40 TCGA-CR-7402-01 12 40651127 40651127 C A LRRK2 Missense_Mutation p.P456T 0.32 deleterious(0.01) possibly_damaging(0.743) TCGA-CR-7402-01 12 40692113 40692113 G C LRRK2 Missense_Mutation p.L1055F 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-CR-7402-01 12 45429829 45429829 G C DBX2 Missense_Mutation p.R158G 0.30 tolerated(0.11) benign(0.241) TCGA-CR-7402-01 12 49438025 49438025 C A KMT2D Missense_Mutation p.A1716S 0.29 probably_damaging(0.91) TCGA-CR-7402-01 12 49447314 49447314 C T KMT2D Missense_Mutation p.A262T 0.31 unknown(0) TCGA-CR-7402-01 12 50186272 50186272 A G NCKAP5L Missense_Mutation p.M1250T 0.22 deleterious(0) benign(0.001) TCGA-CR-7402-01 12 50847384 50847384 C G LARP4 Missense_Mutation p.Q316E 0.25 deleterious(0.04) possibly_damaging(0.762) TCGA-CR-7402-01 12 51213453 51213453 A G ATF1 Missense_Mutation p.E236G 0.46 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 12 53208165 53208165 C G KRT4 5'UTR 0.41 TCGA-CR-7402-01 12 53227940 53227940 T C KRT79 Silent p.S35S 0.31 TCGA-CR-7402-01 12 53233651 53233651 G T KRT78 Missense_Mutation p.L389M 0.28 tolerated(0.62) benign(0.101) TCGA-CR-7402-01 12 53346565 53346565 G A KRT18 Missense_Mutation p.R411H 0.32 tolerated(0.33) benign(0.001) TCGA-CR-7402-01 12 57843137 57843137 C G INHBC Missense_Mutation p.Q131E 0.26 deleterious(0.03) benign(0.098) TCGA-CR-7402-01 12 58163103 58163103 C A METTL1 Missense_Mutation p.V220L 0.34 tolerated(0.56) benign(0.048) TCGA-CR-7402-01 12 60173400 60173400 T C SLC16A7 Silent p.D459D 0.27 TCGA-CR-7402-01 12 62715352 62715352 G T USP15 Missense_Mutation p.D195Y 0.20 deleterious(0) possibly_damaging(0.659) TCGA-CR-7402-01 12 63543951 63543951 G T AVPR1A Silent p.G222G 0.27 TCGA-CR-7402-01 12 66531826 66531826 C T TMBIM4 Missense_Mutation p.V211I 0.31 tolerated(1) benign(0.012) TCGA-CR-7402-01 12 66638281 66638282 - GATGA IRAK3 Frame_Shift_Ins p.D303Efs*9 0.20 TCGA-CR-7402-01 12 68051900 68051900 A T DYRK2 Missense_Mutation p.M405L 0.26 deleterious(0) possibly_damaging(0.762) TCGA-CR-7402-01 12 69203025 69203025 G C MDM2 Missense_Mutation p.G18R 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7402-01 12 71078504 71078504 T C PTPRR Missense_Mutation p.I447V 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-CR-7402-01 12 72335486 72335487 - T TPH2 Frame_Shift_Ins p.L77Ffs*19 0.25 TCGA-CR-7402-01 12 75687068 75687068 C A CAPS2 Missense_Mutation p.R394L 0.24 deleterious(0) probably_damaging(0.985) TCGA-CR-7402-01 12 7653975 7653975 C G CD163 Missense_Mutation p.G73R 0.26 tolerated(0.41) possibly_damaging(0.651) TCGA-CR-7402-01 12 78400500 78400500 G C NAV3 Silent p.R394R 0.27 TCGA-CR-7402-01 12 81627154 81627154 T C ACSS3 Silent p.G541G 0.23 TCGA-CR-7402-01 12 8374323 8374323 G T FAM90A1 3'UTR 0.26 TCGA-CR-7402-01 12 85255711 85255711 G T SLC6A15 Silent p.L631L 0.17 TCGA-CR-7402-01 12 85266419 85266419 G A SLC6A15 Missense_Mutation p.H422Y 0.34 deleterious(0.01) benign(0.173) TCGA-CR-7402-01 12 88433979 88433979 A T C12orf29 Missense_Mutation p.I49L 0.34 tolerated(0.26) benign(0.019) TCGA-CR-7402-01 12 8866600 8866600 G T RIMKLB Missense_Mutation p.M46I 0.39 tolerated(0.33) benign(0.052) TCGA-CR-7402-01 12 96312654 96312654 C A CCDC38 Silent p.T46T 0.24 TCGA-CR-7402-01 12 97158856 97158856 T C C12orf55 Missense_Mutation p.V2714A 0.20 deleterious(0.01) benign(0.001) TCGA-CR-7402-01 12 99007656 99007656 C A IKBIP Missense_Mutation p.D254Y 0.22 deleterious(0) possibly_damaging(0.598) TCGA-CR-7402-01 13 108518792 108518792 C A FAM155A Silent p.L51L 0.32 TCGA-CR-7402-01 13 108518793 108518793 A G FAM155A Missense_Mutation p.L51P 0.33 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 13 113770072 113770072 G T F7 Missense_Mutation p.G177W 0.23 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 13 19753636 19753636 T A TUBA3C Missense_Mutation p.Y24F 0.51 tolerated_low_confidence(0.17) benign(0.113) TCGA-CR-7402-01 13 25406105 25406105 G T RNF17 Missense_Mutation p.C824F 0.32 deleterious(0) probably_damaging(0.962) TCGA-CR-7402-01 13 25671150 25671150 C A PABPC3 Silent p.R272R 0.44 TCGA-CR-7402-01 13 26343303 26343303 G T ATP8A2 Missense_Mutation p.G835V 0.27 deleterious(0) probably_damaging(0.992) TCGA-CR-7402-01 13 27332948 27332948 G T GPR12 3'UTR 0.28 TCGA-CR-7402-01 13 28592684 28592684 G C FLT3 Missense_Mutation p.H821D 0.37 deleterious(0.01) possibly_damaging(0.547) TCGA-CR-7402-01 13 32527088 32527088 C G EEF1DP3 RNA 0.46 TCGA-CR-7402-01 13 39264040 39264040 C A FREM2 Missense_Mutation p.H853Q 0.31 deleterious(0.03) benign(0.014) TCGA-CR-7402-01 13 48955409 48955409 G - RB1 Frame_Shift_Del p.G509Efs*10 0.30 TCGA-CR-7402-01 13 49281445 49281445 C A CYSLTR2 Silent p.I164I 0.44 TCGA-CR-7402-01 13 58208274 58208274 G T PCDH17 Missense_Mutation p.G532W 0.43 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 13 58208540 58208540 C A PCDH17 Missense_Mutation p.S620R 0.44 deleterious(0) probably_damaging(0.988) TCGA-CR-7402-01 13 96599374 96599374 C T UGGT2 Missense_Mutation p.D532N 0.41 deleterious(0.02) possibly_damaging(0.52) TCGA-CR-7402-01 14 106307453 106307453 C T IGHD Missense_Mutation p.D196N 0.35 tolerated(0.05) benign(0.433) TCGA-CR-7402-01 14 106405743 106405743 G A IGHV6-1 Silent p.S77S 0.32 TCGA-CR-7402-01 14 106994246 106994246 C A IGHV3-48 Missense_Mutation p.V8F 0.24 deleterious_low_confidence(0.01) benign(0.109) TCGA-CR-7402-01 14 107131154 107131154 G A IGHV3-66 Missense_Mutation p.T76I 0.38 tolerated_low_confidence(0.07) benign(0.015) TCGA-CR-7402-01 14 20216334 20216334 C A OR4Q3 Missense_Mutation p.L250M 0.14 tolerated(0.11) probably_damaging(1) TCGA-CR-7402-01 14 20248502 20248502 C A OR4M1 Silent p.T7T 0.12 TCGA-CR-7402-01 14 20248683 20248683 C A OR4M1 Missense_Mutation p.L68I 0.11 tolerated(0.05) benign(0.014) TCGA-CR-7402-01 14 20345255 20345255 A T OR4K2 Missense_Mutation p.I277F 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-CR-7402-01 14 20482729 20482729 G C OR4K14 Silent p.S208S 0.28 TCGA-CR-7402-01 14 20502160 20502160 G T OR4K13 Missense_Mutation p.P253Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 14 20528986 20528986 A G OR4L1 Silent p.P261P 0.20 TCGA-CR-7402-01 14 20666322 20666322 C T OR11G2 Silent p.F276F 0.27 TCGA-CR-7402-01 14 20692320 20692320 C A OR11H6 Missense_Mutation p.P151H 0.33 deleterious(0.02) benign(0.072) TCGA-CR-7402-01 14 21109748 21109748 G T OR6S1 Missense_Mutation p.L35I 0.27 tolerated(0.12) benign(0.254) TCGA-CR-7402-01 14 22631741 22631741 T A TRAV29DV5 Silent p.S111S 0.26 TCGA-CR-7402-01 14 22789047 22789047 T A TRAV41 Missense_Mutation p.I87K 0.28 tolerated(0.12) benign(0.002) TCGA-CR-7402-01 14 23021046 23021046 C G AE000662.92 5'Flank 0.17 TCGA-CR-7402-01 14 42355978 42355978 C A LRFN5 Missense_Mutation p.D50E 0.37 deleterious(0.01) possibly_damaging(0.505) TCGA-CR-7402-01 14 45669148 45669148 T C FANCM Silent p.Y2028Y 0.28 TCGA-CR-7402-01 14 50312932 50312932 C A NEMF Missense_Mutation p.V95L 0.29 tolerated(0.08) benign(0.035) TCGA-CR-7402-01 14 51288662 51288662 T G NIN Missense_Mutation p.H38P 0.21 deleterious(0) probably_damaging(0.931) TCGA-CR-7402-01 14 51381466 51381466 G T PYGL Missense_Mutation p.R491S 0.23 deleterious(0) probably_damaging(0.991) TCGA-CR-7402-01 14 52781592 52781592 G C PTGER2 Missense_Mutation p.C109S 0.25 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 14 58056150 58056150 A G SLC35F4 Missense_Mutation p.M160T 0.28 tolerated(1) benign(0) TCGA-CR-7402-01 14 60622799 60622799 G T DHRS7 Missense_Mutation p.Q69K 0.25 deleterious(0.01) possibly_damaging(0.685) TCGA-CR-7402-01 14 64152979 64152979 T A SGPP1 Missense_Mutation p.L390F 0.20 tolerated(0.14) possibly_damaging(0.609) TCGA-CR-7402-01 14 69257126 69257126 C A ZFP36L1 Silent p.G47G 0.26 TCGA-CR-7402-01 14 71555910 71555910 A T PCNX Missense_Mutation p.N1814Y 0.20 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 14 74759551 74759551 T C ABCD4 Missense_Mutation p.Y279C 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 14 74969972 74969972 T A LTBP2 Missense_Mutation p.D1613V 0.37 tolerated(0.51) probably_damaging(0.977) TCGA-CR-7402-01 14 86087868 86087868 C T FLRT2 Nonsense_Mutation p.Q4* 0.25 TCGA-CR-7402-01 14 86088278 86088278 G C FLRT2 Silent p.L140L 0.21 TCGA-CR-7402-01 14 91948115 91948115 T A SMEK1 Silent p.L240L 0.28 TCGA-CR-7402-01 14 93118666 93118666 C G RIN3 Missense_Mutation p.D424E 0.29 tolerated(0.67) benign(0.032) TCGA-CR-7402-01 14 94038416 94038416 C G UNC79 Missense_Mutation p.F467L 0.22 tolerated(1) probably_damaging(0.99) TCGA-CR-7402-01 14 94187840 94187840 T G PRIMA1 Missense_Mutation p.S138R 0.28 deleterious(0) benign(0.036) TCGA-CR-7402-01 14 94711942 94711942 G T PPP4R4 Missense_Mutation p.D455Y 0.24 deleterious(0.04) benign(0.218) TCGA-CR-7402-01 14 95033445 95033445 G A SERPINA4 Missense_Mutation p.C263Y 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-CR-7402-01 14 95058512 95058512 G T SERPINA5 Missense_Mutation p.R386M 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-CR-7402-01 14 95108185 95108185 G A SERPINA13P RNA 0.32 TCGA-CR-7402-01 14 95234860 95234860 C A GSC Nonsense_Mutation p.E248* 0.28 TCGA-CR-7402-01 14 95234861 95234861 C A GSC Missense_Mutation p.E247D 0.27 deleterious_low_confidence(0.02) probably_damaging(0.97) TCGA-CR-7402-01 14 95582111 95582111 G T DICER1 Missense_Mutation p.D600E 0.34 tolerated(1) benign(0) TCGA-CR-7402-01 15 100332882 100332882 C A AC090825.1 3'Flank 0.26 TCGA-CR-7402-01 15 101872152 101872152 C T PCSK6 Missense_Mutation p.R647Q 0.38 tolerated(0.15) benign(0.287) TCGA-CR-7402-01 15 102312420 102312421 - T RN7SL209P 3'Flank 0.25 TCGA-CR-7402-01 15 102346444 102346444 A T OR4F6 Missense_Mutation p.L174F 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.529) TCGA-CR-7402-01 15 20490575 20490575 C T CHEK2P2 RNA 0.12 TCGA-CR-7402-01 15 23931753 23931753 G T NDN Silent p.G204G 0.26 TCGA-CR-7402-01 15 26806276 26806276 C - GABRB3 Frame_Shift_Del p.E295Rfs*75 0.23 TCGA-CR-7402-01 15 30665184 30665184 C A CHRFAM7A Missense_Mutation p.V109L 0.32 tolerated(1) benign(0.002) TCGA-CR-7402-01 15 34040373 34040373 G A RYR3 Missense_Mutation p.G2683D 0.44 probably_damaging(0.984) TCGA-CR-7402-01 15 42442599 42442599 T G PLA2G4F Missense_Mutation p.E286A 0.36 tolerated(0.05) possibly_damaging(0.721) TCGA-CR-7402-01 15 48443294 48443294 T A MYEF2 Intron 0.32 TCGA-CR-7402-01 15 48577336 48577336 C A SLC12A1 Missense_Mutation p.A840E 0.40 tolerated(0.25) benign(0.341) TCGA-CR-7402-01 15 50534984 50534984 C A HDC Missense_Mutation p.G488W 0.35 deleterious(0.01) possibly_damaging(0.471) TCGA-CR-7402-01 15 68650827 68650827 T C ITGA11 Missense_Mutation p.K190R 0.32 tolerated(0.49) benign(0.003) TCGA-CR-7402-01 15 74490147 74490147 G - STRA6 Frame_Shift_Del p.C82Afs*29 0.35 TCGA-CR-7402-01 15 76171514 76171514 T G UBE2Q2 Silent p.L270L 0.32 TCGA-CR-7402-01 15 89401765 89401765 C A ACAN Missense_Mutation p.D1983E 0.43 tolerated(0.74) probably_damaging(0.997) TCGA-CR-7402-01 15 90320436 90320436 C G MESP2 Missense_Mutation p.S283W 0.59 deleterious(0) possibly_damaging(0.465) TCGA-CR-7402-01 16 10971201 10971201 C T CIITA Missense_Mutation p.A5V 0.27 tolerated_low_confidence(0.14) benign(0.002) TCGA-CR-7402-01 16 11647435 11647435 C A LITAF Missense_Mutation p.A111S 0.23 tolerated(1) benign(0.059) TCGA-CR-7402-01 16 20327337 20327337 C A GP2 Missense_Mutation p.S484I 0.21 deleterious(0) possibly_damaging(0.903) TCGA-CR-7402-01 16 20370759 20370759 G C PDILT Missense_Mutation p.S546C 0.19 deleterious_low_confidence(0.05) benign(0.068) TCGA-CR-7402-01 16 20442556 20442556 G A ACSM5 Silent p.E407E 0.23 TCGA-CR-7402-01 16 20548573 20548573 A G ACSM2B 3'UTR 0.20 TCGA-CR-7402-01 16 20948070 20948070 C T DNAH3 Silent p.V3920V 0.28 TCGA-CR-7402-01 16 2159077 2159077 C A PKD1 Missense_Mutation p.V2031L 0.48 benign(0.153) TCGA-CR-7402-01 16 2167056 2167056 T C PKD1 Splice_Site p.X462_splice 0.41 TCGA-CR-7402-01 16 22126703 22126703 A G VWA3A Missense_Mutation p.Q242R 0.14 tolerated(0.12) benign(0.071) TCGA-CR-7402-01 16 2329015 2329015 C T ABCA3 Silent p.G1492G 0.27 TCGA-CR-7402-01 16 23768878 23768878 A G CHP2 Missense_Mutation p.K189E 0.23 deleterious(0) possibly_damaging(0.793) TCGA-CR-7402-01 16 2578355 2578355 G C AMDHD2 Missense_Mutation p.R279P 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7402-01 16 28508799 28508800 GG T APOBR Frame_Shift_Del p.G813Sfs*7 0.14 TCGA-CR-7402-01 16 29675891 29675891 A C SPN Missense_Mutation p.Q281P 0.27 deleterious(0) possibly_damaging(0.702) TCGA-CR-7402-01 16 30100304 30100304 C T TBX6 Missense_Mutation p.R194H 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7402-01 16 30794552 30794552 C A ZNF629 Missense_Mutation p.R366L 0.43 deleterious(0) probably_damaging(0.996) TCGA-CR-7402-01 16 32891911 32891911 G T SLC6A10P RNA 0.21 TCGA-CR-7402-01 16 3306443 3306443 T G MEFV Silent p.R49R 0.43 TCGA-CR-7402-01 16 422106 422106 C G TMEM8A Missense_Mutation p.A733P 0.47 deleterious(0.01) possibly_damaging(0.82) TCGA-CR-7402-01 16 49433207 49433207 C T C16orf78 3'UTR 0.30 TCGA-CR-7402-01 16 50811792 50811792 G - CYLD Frame_Shift_Del p.S361Lfs*47 0.35 TCGA-CR-7402-01 16 51175026 51175026 C G SALL1 Silent p.A369A 0.26 TCGA-CR-7402-01 16 55360356 55360356 T A IRX6 Missense_Mutation p.Y52N 0.50 deleterious(0) probably_damaging(0.983) TCGA-CR-7402-01 16 57722456 57722456 C G GPR97 3'UTR 0.40 TCGA-CR-7402-01 16 65016141 65016141 C T CDH11 Missense_Mutation p.D355N 0.48 deleterious(0.02) possibly_damaging(0.55) TCGA-CR-7402-01 16 69377541 69377541 G A TMED6 Silent p.D164D 0.52 TCGA-CR-7402-01 16 818749 818749 G C MSLN 3'UTR 0.17 TCGA-CR-7402-01 16 81979842 81979842 G C PLCG2 Missense_Mutation p.V1182L 0.36 deleterious(0.01) benign(0.248) TCGA-CR-7402-01 16 9923416 9923416 C G GRIN2A Missense_Mutation p.G624A 0.19 deleterious(0.01) probably_damaging(1) TCGA-CR-7402-01 17 10304018 10304018 G A MYH8 Missense_Mutation p.L1142F 0.30 deleterious(0) benign(0.169) TCGA-CR-7402-01 17 10348361 10348361 G A MYH4 Missense_Mutation p.R1800C 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-CR-7402-01 17 10354160 10354160 G T MYH4 Silent p.S1306S 0.35 TCGA-CR-7402-01 17 10424725 10424725 C T MYH2 Missense_Mutation p.A1900T 0.28 tolerated(0.16) benign(0.004) TCGA-CR-7402-01 17 10428788 10428788 C T MYH2 Missense_Mutation p.R1506Q 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-CR-7402-01 17 10433044 10433044 G T MYH2 Missense_Mutation p.T985K 0.31 deleterious(0.01) possibly_damaging(0.774) TCGA-CR-7402-01 17 11522951 11522951 G C DNAH9 Missense_Mutation p.L401F 0.30 benign(0.098) TCGA-CR-7402-01 17 11648295 11648295 T A DNAH9 Missense_Mutation p.F2098Y 0.26 probably_damaging(0.999) TCGA-CR-7402-01 17 12620739 12620739 G T MYOCD Splice_Site p.X85_splice 0.23 TCGA-CR-7402-01 17 1386207 1386207 T G MYO1C Missense_Mutation p.E165A 0.27 tolerated(0.35) benign(0.026) TCGA-CR-7402-01 17 1841024 1841025 CA - RTN4RL1 Frame_Shift_Del p.C31Lfs*208 0.27 TCGA-CR-7402-01 17 21318738 21318738 C T KCNJ12 Silent p.A28A 0.10 TCGA-CR-7402-01 17 21477513 21477513 G C AC138710.1 5'Flank 0.45 TCGA-CR-7402-01 17 27621096 27621096 C A NUFIP2 5'UTR 0.19 TCGA-CR-7402-01 17 32646545 32646545 T C CCL8 Missense_Mutation p.C9R 0.41 deleterious(0.01) benign(0.293) TCGA-CR-7402-01 17 3324182 3324182 C A OR3A3 Silent p.L107L 0.21 TCGA-CR-7402-01 17 34136516 34136516 G T TAF15 5'UTR 0.28 TCGA-CR-7402-01 17 35468548 35468548 T G ACACA Silent p.V2161V 0.27 TCGA-CR-7402-01 17 36352507 36352507 G A RP11-1407O15.2 Missense_Mutation p.S427F 0.20 TCGA-CR-7402-01 17 37009953 37009953 C G RPL23 Missense_Mutation p.R4P 0.18 deleterious(0.01) benign(0.007) TCGA-CR-7402-01 17 38910665 38910665 C T KRT25 Missense_Mutation p.R162K 0.27 deleterious(0.04) probably_damaging(0.983) TCGA-CR-7402-01 17 39019473 39019473 C A KRT12 Missense_Mutation p.E406D 0.40 deleterious(0.01) benign(0.302) TCGA-CR-7402-01 17 39190992 39190992 T C KRTAP1-3 Missense_Mutation p.S28G 0.38 deleterious(0.02) unknown(0) TCGA-CR-7402-01 17 39521745 39521745 G T KRT33B Missense_Mutation p.P217T 0.24 deleterious(0.02) probably_damaging(0.941) TCGA-CR-7402-01 17 39535393 39535393 C A KRT34 Missense_Mutation p.E346D 0.37 deleterious(0.03) probably_damaging(0.983) TCGA-CR-7402-01 17 40734205 40734205 G C FAM134C Missense_Mutation p.L343V 0.29 tolerated(0.42) possibly_damaging(0.548) TCGA-CR-7402-01 17 41133041 41133041 G C RUNDC1 Missense_Mutation p.E150Q 0.40 tolerated(0.43) benign(0.003) TCGA-CR-7402-01 17 42854579 42854579 C T ADAM11 Missense_Mutation p.T576M 0.19 deleterious(0.01) possibly_damaging(0.77) TCGA-CR-7402-01 17 42931930 42931930 G A EFTUD2 Silent p.P751P 0.20 TCGA-CR-7402-01 17 42931931 42931931 G A EFTUD2 Missense_Mutation p.P751L 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-CR-7402-01 17 4350211 4350211 G A SPNS3 Missense_Mutation p.G192E 0.36 deleterious(0) probably_damaging(0.979) TCGA-CR-7402-01 17 49353297 49353297 C A UTP18 Missense_Mutation p.P261H 0.38 deleterious(0) probably_damaging(0.99) TCGA-CR-7402-01 17 55607074 55607074 A G MSI2 Missense_Mutation p.N148S 0.29 deleterious(0.04) possibly_damaging(0.827) TCGA-CR-7402-01 17 56598341 56598341 C A SEPT4 Intron 0.30 TCGA-CR-7402-01 17 56619276 56619276 C A C17orf47 Missense_Mutation p.C538F 0.31 deleterious(0.03) benign(0.007) TCGA-CR-7402-01 17 61833679 61833679 C A CCDC47 Missense_Mutation p.G290V 0.28 tolerated(0.12) possibly_damaging(0.65) TCGA-CR-7402-01 17 61843413 61843413 T C CCDC47 Silent p.E41E 0.31 TCGA-CR-7402-01 17 63206682 63206682 G T RGS9 Missense_Mutation p.A456S 0.28 deleterious(0.05) benign(0.028) TCGA-CR-7402-01 17 65119097 65119097 C T HELZ Missense_Mutation p.V1207M 0.19 tolerated_low_confidence(0.81) benign(0.135) TCGA-CR-7402-01 17 65162623 65162623 C T HELZ Missense_Mutation p.M622I 0.30 tolerated(0.09) benign(0.024) TCGA-CR-7402-01 17 65717512 65717512 A G NOL11 Missense_Mutation p.R111G 0.20 deleterious(0) possibly_damaging(0.548) TCGA-CR-7402-01 17 66871844 66871844 C G ABCA8 Silent p.T1427T 0.28 TCGA-CR-7402-01 17 72301505 72301505 A T DNAI2 Missense_Mutation p.N379Y 0.47 tolerated(0.42) benign(0.05) TCGA-CR-7402-01 17 73569302 73569302 A G LLGL2 Missense_Mutation p.I890V 0.32 tolerated(0.15) benign(0.078) TCGA-CR-7402-01 17 75212635 75212635 C T SEC14L1 Nonsense_Mutation p.R717* 0.27 TCGA-CR-7402-01 17 7577138 7577138 C G TP53 Missense_Mutation p.R267P 0.57 deleterious(0) probably_damaging(0.997) TCGA-CR-7402-01 17 76200969 76200969 A G AFMID Missense_Mutation p.Y152C 0.27 deleterious(0) probably_damaging(0.978) TCGA-CR-7402-01 17 7689567 7689567 C T DNAH2 Silent p.C2085C 0.28 TCGA-CR-7402-01 17 79176070 79176070 C A AZI1 Missense_Mutation p.R253L 0.24 deleterious(0) possibly_damaging(0.776) TCGA-CR-7402-01 17 7977057 7977057 C G ALOX12B Missense_Mutation p.R558P 0.24 tolerated(0.24) possibly_damaging(0.726) TCGA-CR-7402-01 17 80195732 80195732 G - SLC16A3 Frame_Shift_Del p.E363Rfs*38 0.24 TCGA-CR-7402-01 17 80699208 80699208 A T FN3K Missense_Mutation p.E136V 0.50 tolerated(0.06) benign(0.02) TCGA-CR-7402-01 17 80885196 80885196 C T TBCD Missense_Mutation p.T869I 0.27 deleterious(0) benign(0.012) TCGA-CR-7402-01 17 8656718 8656718 G A SPDYE4 Missense_Mutation p.P192L 0.26 tolerated(0.08) probably_damaging(0.975) TCGA-CR-7402-01 18 10672752 10672752 G C PIEZO2 Silent p.A2647A 0.11 TCGA-CR-7402-01 18 13826509 13826509 G A MC5R Missense_Mutation p.V249M 0.11 deleterious(0.02) possibly_damaging(0.714) TCGA-CR-7402-01 18 14105881 14105881 G A ZNF519 Missense_Mutation p.P220S 0.08 tolerated(0.44) benign(0) TCGA-CR-7402-01 18 14478763 14478763 G T CXADRP3 RNA 0.18 TCGA-CR-7402-01 18 14752966 14752966 G - ANKRD30B Frame_Shift_Del p.A156Qfs*37 0.19 TCGA-CR-7402-01 18 18572799 18572799 G A ROCK1 Missense_Mutation p.S662L 0.49 tolerated(1) benign(0) TCGA-CR-7402-01 18 31319219 31319219 C - ASXL3 Frame_Shift_Del p.P618Qfs*59 0.34 TCGA-CR-7402-01 18 31323688 31323688 C A ASXL3 Nonsense_Mutation p.C1292* 0.57 TCGA-CR-7402-01 18 43253684 43253684 T A SLC14A2 Missense_Mutation p.F805Y 0.55 tolerated(0.84) possibly_damaging(0.462) TCGA-CR-7402-01 18 44560992 44560992 G T TCEB3B Missense_Mutation p.P215H 0.72 tolerated(0.06) possibly_damaging(0.77) TCGA-CR-7402-01 18 48439273 48439273 G T ME2 Silent p.T115T 0.54 TCGA-CR-7402-01 18 51013297 51013297 G T DCC Silent p.V1289V 0.53 TCGA-CR-7402-01 18 580859 580859 C T CETN1 Missense_Mutation p.R151W 0.20 deleterious(0.02) probably_damaging(0.963) TCGA-CR-7402-01 18 5891787 5891787 C T TMEM200C Silent p.A92A 0.09 TCGA-CR-7402-01 18 59203814 59203814 C T CDH20 Missense_Mutation p.R454W 0.50 deleterious(0) probably_damaging(0.95) TCGA-CR-7402-01 18 657969 657969 G C C18orf56 Silent p.S93S 0.17 TCGA-CR-7402-01 18 67562961 67562961 C A CD226 Missense_Mutation p.V235L 0.54 tolerated(0.15) benign(0.145) TCGA-CR-7402-01 18 6876197 6876197 C A ARHGAP28 Missense_Mutation p.A268D 0.50 deleterious(0.02) probably_damaging(0.98) TCGA-CR-7402-01 18 7024446 7024446 G A LAMA1 Missense_Mutation p.L808F 0.10 tolerated(0.06) probably_damaging(0.931) TCGA-CR-7402-01 18 70417315 70417315 T A NETO1 Missense_Mutation p.H508L 0.48 deleterious_low_confidence(0.01) benign(0.116) TCGA-CR-7402-01 18 8379247 8379247 G T PTPRM Missense_Mutation p.C1232F 0.19 tolerated(0.74) benign(0.299) TCGA-CR-7402-01 18 9887082 9887082 C G TXNDC2 Missense_Mutation p.I202M 0.09 deleterious(0.04) possibly_damaging(0.869) TCGA-CR-7402-01 19 10475629 10475629 C T TYK2 Silent p.P369P 0.31 TCGA-CR-7402-01 19 11144853 11144853 G T SMARCA4 Nonsense_Mutation p.E1310* 0.34 TCGA-CR-7402-01 19 12256682 12256682 T A ZNF625 Silent p.I183I 0.26 TCGA-CR-7402-01 19 12951880 12951880 G - MAST1 Frame_Shift_Del 0.19 TCGA-CR-7402-01 19 13340911 13340911 T C CACNA1A Missense_Mutation p.Y1838C 0.39 possibly_damaging(0.878) TCGA-CR-7402-01 19 14094399 14094399 T G RFX1 Missense_Mutation p.M110L 0.23 tolerated_low_confidence(0.52) benign(0.001) TCGA-CR-7402-01 19 15651434 15651434 G - CYP4F22 Frame_Shift_Del p.R283Gfs*87 0.25 TCGA-CR-7402-01 19 22785476 22785476 C A AC011467.1 5'Flank 0.25 TCGA-CR-7402-01 19 22940748 22940748 C T ZNF99 Missense_Mutation p.G655S 0.17 deleterious(0.02) probably_damaging(0.967) TCGA-CR-7402-01 19 22941188 22941191 GGTT AGGTA ZNF99 Frame_Shift_Ins p.K507Ifs*6 0.17 TCGA-CR-7402-01 19 24309076 24309076 C T ZNF254 Nonsense_Mutation p.Q92* 0.18 TCGA-CR-7402-01 19 2717513 2717513 C T DIRAS1 Missense_Mutation p.G98R 0.40 tolerated(0.35) benign(0.001) TCGA-CR-7402-01 19 3015720 3015720 C G TLE2 Missense_Mutation p.E203D 0.42 tolerated(0.43) benign(0.24) TCGA-CR-7402-01 19 31769884 31769884 T A TSHZ3 Missense_Mutation p.Q272L 0.23 deleterious(0) probably_damaging(0.995) TCGA-CR-7402-01 19 32844667 32844667 G A ZNF507 Missense_Mutation p.E311K 0.22 tolerated(0.86) benign(0.002) TCGA-CR-7402-01 19 35613703 35613703 C G FXYD3 Missense_Mutation p.C101W 0.29 deleterious(0.02) possibly_damaging(0.481) TCGA-CR-7402-01 19 36018649 36018649 C T SBSN Missense_Mutation p.G179R 0.26 deleterious(0) benign(0.39) TCGA-CR-7402-01 19 36357124 36357124 T C KIRREL2 Silent p.P619P 0.17 TCGA-CR-7402-01 19 3653452 3653452 C G PIP5K1C Missense_Mutation p.D253H 0.26 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 19 38103945 38103945 T A ZNF540 Missense_Mutation p.F588L 0.25 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 19 38956797 38956797 G C RYR1 Silent p.A979A 0.28 TCGA-CR-7402-01 19 39881986 39881986 G A MED29 5'UTR 0.27 TCGA-CR-7402-01 19 4054160 4054160 G T ZBTB7A Missense_Mutation p.S357R 0.31 deleterious(0) benign(0.266) TCGA-CR-7402-01 19 4054266 4054266 T A ZBTB7A Missense_Mutation p.Q322L 0.21 deleterious(0) benign(0.081) TCGA-CR-7402-01 19 40886623 40886623 G T HIPK4 Silent p.A425A 0.34 TCGA-CR-7402-01 19 41516003 41516003 C T CYP2B6 Silent p.Y309Y 0.17 TCGA-CR-7402-01 19 42190981 42190981 A T CEACAM7 Missense_Mutation p.I79N 0.29 deleterious(0) probably_damaging(0.997) TCGA-CR-7402-01 19 43529181 43529181 G T PSG11 Missense_Mutation p.P31H 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-CR-7402-01 19 43585036 43585036 A G PSG2 Missense_Mutation p.Y143H 0.19 tolerated(0.23) benign(0.001) TCGA-CR-7402-01 19 44051050 44051050 T A XRCC1 Nonsense_Mutation p.K427* 0.21 TCGA-CR-7402-01 19 44131332 44131332 G T CADM4 Missense_Mutation p.T117K 0.28 tolerated(0.27) possibly_damaging(0.871) TCGA-CR-7402-01 19 46056875 46056875 T A OPA3 Intron 0.24 TCGA-CR-7402-01 19 46195265 46195265 C A SNRPD2 5'UTR 0.22 TCGA-CR-7402-01 19 46195266 46195266 C A SNRPD2 5'UTR 0.19 TCGA-CR-7402-01 19 46290016 46290016 G A DMWD Silent p.P246P 0.33 TCGA-CR-7402-01 19 47503715 47503715 A G ARHGAP35 Missense_Mutation p.I1424V 0.29 tolerated(0.56) benign(0.019) TCGA-CR-7402-01 19 47978726 47978726 G T KPTN Missense_Mutation p.Q420K 0.31 tolerated_low_confidence(0.3) benign(0.02) TCGA-CR-7402-01 19 48339545 48339545 G A CRX Missense_Mutation p.S49N 0.27 deleterious(0.02) benign(0.008) TCGA-CR-7402-01 19 4891178 4891178 C A ARRDC5 Missense_Mutation p.W303C 0.29 tolerated(0.31) probably_damaging(0.991) TCGA-CR-7402-01 19 50364538 50364538 C A PNKP Silent p.L511L 0.35 TCGA-CR-7402-01 19 50657863 50657863 A G IZUMO2 Missense_Mutation p.V206A 0.32 tolerated(0.21) benign(0.294) TCGA-CR-7402-01 19 5082396 5082396 G T KDM4B Nonsense_Mutation p.E267* 0.29 TCGA-CR-7402-01 19 51133373 51133373 G T SYT3 Missense_Mutation p.P244T 0.26 tolerated(0.16) benign(0.002) TCGA-CR-7402-01 19 51274592 51274592 G T GPR32 Silent p.R245R 0.28 TCGA-CR-7402-01 19 51984682 51984682 A G CEACAM18 Missense_Mutation p.S207G 0.25 deleterious(0) benign(0.156) TCGA-CR-7402-01 19 53913050 53913050 G C ZNF765 3'UTR 0.12 TCGA-CR-7402-01 19 541375 541375 T C CDC34 Silent p.R178R 0.35 TCGA-CR-7402-01 19 54401341 54401341 T C PRKCG Silent p.V356V 0.30 TCGA-CR-7402-01 19 54403889 54403889 G A PRKCG Missense_Mutation p.M487I 0.34 tolerated(0.06) probably_damaging(0.914) TCGA-CR-7402-01 19 54742904 54742904 G T LILRA6 Silent p.V457V 0.25 TCGA-CR-7402-01 19 54848235 54848235 C A LILRA4 Missense_Mutation p.A378S 0.24 deleterious(0.03) probably_damaging(0.993) TCGA-CR-7402-01 19 55146717 55146717 C A LILRB1 Missense_Mutation p.P524T 0.15 deleterious(0.01) benign(0.022) TCGA-CR-7402-01 19 55417664 55417664 T A NCR1 Nonsense_Mutation p.C14* 0.20 TCGA-CR-7402-01 19 56370017 56370017 C A NLRP4 Silent p.R420R 0.23 TCGA-CR-7402-01 19 56372754 56372754 C A NLRP4 Nonsense_Mutation p.S620* 0.37 TCGA-CR-7402-01 19 56382227 56382227 G A NLRP4 Missense_Mutation p.E797K 0.34 tolerated(0.46) benign(0.01) TCGA-CR-7402-01 19 56688471 56688471 G A GALP 5'UTR 0.50 TCGA-CR-7402-01 19 57335011 57335011 A T PEG3 Missense_Mutation p.M144K 0.34 deleterious(0) benign(0.038) TCGA-CR-7402-01 19 57641686 57641686 C T USP29 Missense_Mutation p.P548L 0.26 tolerated(0.06) benign(0.169) TCGA-CR-7402-01 19 58967712 58967712 G T ZNF324B Silent p.V467V 0.24 TCGA-CR-7402-01 19 6686804 6686804 C G C3 Missense_Mutation p.G1200A 0.30 deleterious(0.01) benign(0.328) TCGA-CR-7402-01 19 746513 746513 C A PALM Missense_Mutation p.P288Q 0.19 deleterious(0.01) possibly_damaging(0.749) TCGA-CR-7402-01 19 7999066 7999066 C A TIMM44 Nonsense_Mutation p.E151* 0.24 TCGA-CR-7402-01 19 814685 814685 G T LPPR3 Missense_Mutation p.P222T 0.49 tolerated_low_confidence(0.23) unknown(0) TCGA-CR-7402-01 19 8206823 8206823 C A FBN3 Splice_Site p.X247_splice 0.18 TCGA-CR-7402-01 19 8206824 8206824 C A FBN3 Missense_Mutation p.D247Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 19 8587264 8587264 C T MYO1F Missense_Mutation p.E1073K 0.27 tolerated(0.62) possibly_damaging(0.582) TCGA-CR-7402-01 19 8933363 8933363 C A ZNF558 5'UTR 0.36 TCGA-CR-7402-01 19 9015728 9015728 C A MUC16 Missense_Mutation p.V12699L 0.23 benign(0.262) TCGA-CR-7402-01 19 9059286 9059286 G A MUC16 Missense_Mutation p.S9387L 0.24 unknown(0) TCGA-CR-7402-01 19 9059658 9059658 G C MUC16 Missense_Mutation p.T9263R 0.25 unknown(0) TCGA-CR-7402-01 19 9071927 9071927 A G MUC16 Silent p.G5173G 0.22 TCGA-CR-7402-01 19 9075894 9075894 T A MUC16 Missense_Mutation p.Q3851L 0.33 unknown(0) TCGA-CR-7402-01 1 104112906 104112906 G T AMY2B Intron 0.57 TCGA-CR-7402-01 1 109803804 109803804 G A CELSR2 Missense_Mutation p.V1367M 0.29 tolerated(0.47) benign(0.049) TCGA-CR-7402-01 1 110170415 110170415 C A AMPD2 Silent p.R378R 0.24 TCGA-CR-7402-01 1 11090242 11090242 A T MASP2 Missense_Mutation p.C430S 0.56 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 1 114376998 114376998 G T PTPN22 Nonsense_Mutation p.S653* 0.27 TCGA-CR-7402-01 1 114442738 114442738 C T AP4B1 Missense_Mutation p.R301H 0.30 tolerated(0.1) benign(0.103) TCGA-CR-7402-01 1 115527424 115527424 A T SYCP1 Nonsense_Mutation p.K880* 0.31 TCGA-CR-7402-01 1 115828838 115828838 G A NGF Silent p.D193D 0.30 TCGA-CR-7402-01 1 116380668 116380668 G - NHLH2 Frame_Shift_Del p.P109Rfs*148 0.16 TCGA-CR-7402-01 1 117142746 117142746 G C IGSF3 Missense_Mutation p.R636G 0.32 deleterious(0) probably_damaging(0.949) TCGA-CR-7402-01 1 119958051 119958051 G T HSD3B2 Missense_Mutation p.W3C 0.24 tolerated(0.17) probably_damaging(0.986) TCGA-CR-7402-01 1 120336711 120336711 T A REG4 3'UTR 0.25 TCGA-CR-7402-01 1 12908094 12908094 G C HNRNPCL1 Missense_Mutation p.R17G 0.22 deleterious(0) possibly_damaging(0.578) TCGA-CR-7402-01 1 145075769 145075769 G C PDE4DIP Missense_Mutation p.R32G 0.13 tolerated_low_confidence(0.66) benign(0.169) TCGA-CR-7402-01 1 145439871 145439874 AAAG - TXNIP Frame_Shift_Del p.K141Tfs*4 0.32 TCGA-CR-7402-01 1 145497393 145497393 G T LIX1L Missense_Mutation p.G200C 0.20 deleterious(0.01) probably_damaging(0.917) TCGA-CR-7402-01 1 147231343 147231343 C A GJA5 Missense_Mutation p.G2C 0.18 deleterious(0) probably_damaging(0.997) TCGA-CR-7402-01 1 1509984 1509984 T A SSU72 5'UTR 0.71 TCGA-CR-7402-01 1 152192079 152192079 C T HRNR Missense_Mutation p.G676S 0.32 unknown(0) TCGA-CR-7402-01 1 152382869 152382869 G T CRNN Missense_Mutation p.S230Y 0.32 tolerated(0.09) possibly_damaging(0.543) TCGA-CR-7402-01 1 152733815 152733815 A C KPRP 3'UTR 0.21 TCGA-CR-7402-01 1 153004977 153004977 A G SPRR1B Silent p.K52K 0.13 TCGA-CR-7402-01 1 156642721 156642721 C A NES Missense_Mutation p.G420V 0.27 deleterious(0.01) probably_damaging(0.92) TCGA-CR-7402-01 1 156906017 156906018 CA - ARHGEF11 Intron 0.19 TCGA-CR-7402-01 1 157567768 157567768 G C FCRL4 5'UTR 0.37 TCGA-CR-7402-01 1 158263289 158263289 A T CD1C 3'UTR 0.31 TCGA-CR-7402-01 1 158724824 158724824 G T OR6K6 Missense_Mutation p.M73I 0.21 tolerated(1) benign(0) TCGA-CR-7402-01 1 159850454 159850454 G A CCDC19 Nonsense_Mutation p.Q312* 0.19 TCGA-CR-7402-01 1 162724444 162724444 G A DDR2 Nonsense_Mutation p.W72* 0.33 TCGA-CR-7402-01 1 165377463 165377463 C A RXRG Splice_Site p.X380_splice 0.34 TCGA-CR-7402-01 1 165377464 165377464 C A RXRG Missense_Mutation p.D380Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 1 167097589 167097589 C T DUSP27 Missense_Mutation p.S1074L 0.43 deleterious(0) possibly_damaging(0.731) TCGA-CR-7402-01 1 169941740 169941740 C G KIFAP3 Splice_Site p.X633_splice 0.26 TCGA-CR-7402-01 1 170961417 170961417 G A MROH9 Missense_Mutation p.V381I 0.18 tolerated(0.14) benign(0.005) TCGA-CR-7402-01 1 172113760 172113760 G A DNM3 Intron 0.33 TCGA-CR-7402-01 1 173010716 173010716 C T TNFSF18 Missense_Mutation p.D131N 0.31 tolerated(0.75) benign(0.072) TCGA-CR-7402-01 1 175049390 175049390 C A TNN Silent p.L292L 0.32 TCGA-CR-7402-01 1 175054604 175054604 A G TNN Missense_Mutation p.K433R 0.26 tolerated(0.19) benign(0.119) TCGA-CR-7402-01 1 175067479 175067479 C G TNN Missense_Mutation p.P623A 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CR-7402-01 1 175914244 175914244 A G RFWD2 3'UTR 0.33 TCGA-CR-7402-01 1 179077050 179077050 C A ABL2 Missense_Mutation p.D1118Y 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.649) TCGA-CR-7402-01 1 179632540 179632540 C T TDRD5 Missense_Mutation p.L855F 0.25 tolerated(0.44) benign(0.093) TCGA-CR-7402-01 1 180061771 180061771 G C CEP350 Missense_Mutation p.E2177D 0.31 benign(0.009) TCGA-CR-7402-01 1 181705563 181705563 A T CACNA1E Missense_Mutation p.T1139S 0.22 tolerated(0.1) possibly_damaging(0.678) TCGA-CR-7402-01 1 181754552 181754552 C G CACNA1E Missense_Mutation p.Q1893E 0.24 tolerated(0.09) benign(0.149) TCGA-CR-7402-01 1 181759621 181759621 C T CACNA1E Missense_Mutation p.P1943S 0.20 tolerated(0.19) benign(0.005) TCGA-CR-7402-01 1 182354693 182354693 T C GLUL Splice_Site p.X202_splice 0.26 TCGA-CR-7402-01 1 182640845 182640845 G A RGS8 Silent p.L9L 0.23 TCGA-CR-7402-01 1 185089100 185089100 G T TRMT1L 3'UTR 0.22 TCGA-CR-7402-01 1 185114616 185114616 T A TRMT1L Missense_Mutation p.R204W 0.24 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-CR-7402-01 1 186344180 186344180 C A TPR 5'UTR 0.29 TCGA-CR-7402-01 1 190067933 190067933 T A BRINP3 Nonsense_Mutation p.R506* 0.29 TCGA-CR-7402-01 1 19168324 19168324 T A TAS1R2 Missense_Mutation p.K497M 0.25 deleterious(0.03) benign(0.389) TCGA-CR-7402-01 1 19428082 19428082 G T UBR4 Missense_Mutation p.R4319S 0.31 probably_damaging(0.931) TCGA-CR-7402-01 1 198721748 198721748 A T PTPRC Missense_Mutation p.Q1119L 0.21 deleterious(0.02) possibly_damaging(0.861) TCGA-CR-7402-01 1 200826433 200826433 G C CAMSAP2 Splice_Site p.X1338_splice 0.26 TCGA-CR-7402-01 1 200948800 200948800 G T KIF21B Silent p.I1341I 0.31 TCGA-CR-7402-01 1 203192687 203192687 C A CHIT1 Missense_Mutation p.W139L 0.33 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 1 207131928 207131928 A T FCAMR Missense_Mutation p.M556K 0.32 deleterious(0) benign(0.115) TCGA-CR-7402-01 1 207697136 207697136 G A CR1 Missense_Mutation p.G223D 0.20 deleterious(0.01) probably_damaging(0.911) TCGA-CR-7402-01 1 207790123 207790123 C G CR1 Missense_Mutation p.R2289G 0.24 deleterious(0.04) possibly_damaging(0.847) TCGA-CR-7402-01 1 20977105 20977105 T A PINK1 Missense_Mutation p.M556K 0.59 deleterious(0.04) benign(0.071) TCGA-CR-7402-01 1 215847664 215847664 G T USH2A Nonsense_Mutation p.S4530* 0.35 TCGA-CR-7402-01 1 224585902 224585902 G C WDR26 Missense_Mutation p.D557E 0.32 deleterious(0.01) benign(0.186) TCGA-CR-7402-01 1 228285798 228285798 A G ARF1 3'UTR 0.20 TCGA-CR-7402-01 1 228481186 228481186 G T OBSCN Missense_Mutation p.G4096V 0.33 probably_damaging(0.99) TCGA-CR-7402-01 1 228492877 228492877 G C OBSCN Missense_Mutation p.A4774P 0.27 probably_damaging(0.947) TCGA-CR-7402-01 1 22927255 22927255 G T EPHA8 Missense_Mutation p.E830D 0.55 deleterious(0) probably_damaging(0.995) TCGA-CR-7402-01 1 229730582 229730582 C A TAF5L Missense_Mutation p.W411L 0.19 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 1 229794961 229794961 A G URB2 Missense_Mutation p.R1498G 0.23 deleterious(0) possibly_damaging(0.767) TCGA-CR-7402-01 1 22987522 22987522 C A C1QB Silent p.R135R 0.55 TCGA-CR-7402-01 1 23234658 23234658 C A EPHB2 Silent p.A784A 0.52 TCGA-CR-7402-01 1 236208939 236208939 G - NID1 Frame_Shift_Del p.Y191Mfs*89 0.22 TCGA-CR-7402-01 1 236912520 236912520 G C ACTN2 Missense_Mutation p.D538H 0.20 deleterious(0.03) probably_damaging(1) TCGA-CR-7402-01 1 237608772 237608772 C A RYR2 Silent p.R414R 0.18 TCGA-CR-7402-01 1 237947191 237947191 A C RYR2 Missense_Mutation p.Q4060P 0.46 benign(0) TCGA-CR-7402-01 1 23857277 23857277 T A E2F2 Missense_Mutation p.Q3H 0.56 deleterious_low_confidence(0) benign(0.248) TCGA-CR-7402-01 1 242253370 242253370 C - PLD5 Frame_Shift_Del p.G466Afs*11 0.30 TCGA-CR-7402-01 1 245018845 245018845 C G HNRNPU Missense_Mutation p.G745R 0.21 tolerated(0.54) unknown(0) TCGA-CR-7402-01 1 247013403 247013403 C A AHCTF1 Missense_Mutation p.A1978S 0.19 tolerated(0.27) benign(0.318) TCGA-CR-7402-01 1 247695520 247695520 A T OR2C3 Nonsense_Mutation p.C98* 0.25 TCGA-CR-7402-01 1 247769112 247769112 T C OR2G3 Silent p.T75T 0.46 TCGA-CR-7402-01 1 247835616 247835616 G T OR13G1 Missense_Mutation p.T243K 0.51 deleterious(0) benign(0.044) TCGA-CR-7402-01 1 247978277 247978277 C T OR14A16 Missense_Mutation p.G252E 0.46 deleterious(0) probably_damaging(0.991) TCGA-CR-7402-01 1 248084536 248084536 T C OR2T8 Missense_Mutation p.S73P 0.04 tolerated(0.24) possibly_damaging(0.786) TCGA-CR-7402-01 1 248129117 248129117 T A OR2AK2 Missense_Mutation p.C162S 0.42 tolerated(0.31) benign(0.05) TCGA-CR-7402-01 1 248309365 248309365 G T OR2M5 Nonsense_Mutation p.G306* 0.41 TCGA-CR-7402-01 1 248366631 248366631 G T OR2M3 Missense_Mutation p.G88C 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-CR-7402-01 1 248366998 248366998 C A OR2M3 Missense_Mutation p.P210H 0.40 deleterious(0) probably_damaging(0.993) TCGA-CR-7402-01 1 248737333 248737333 G A OR2T34 Silent p.A242A 0.46 TCGA-CR-7402-01 1 248790227 248790227 G C OR2T11 Missense_Mutation p.T68S 0.42 deleterious(0) possibly_damaging(0.472) TCGA-CR-7402-01 1 27089589 27089589 C T ARID1A Missense_Mutation p.P849S 0.27 unknown(0) TCGA-CR-7402-01 1 3319429 3319429 T G PRDM16 Missense_Mutation p.Y251D 0.59 deleterious(0.04) probably_damaging(0.974) TCGA-CR-7402-01 1 34180246 34180246 C A CSMD2 Missense_Mutation p.R1076L 0.60 deleterious(0.04) benign(0.36) TCGA-CR-7402-01 1 3754057 3754057 G C CEP104 Silent p.L306L 0.42 TCGA-CR-7402-01 1 38484769 38484769 T A UTP11L Missense_Mutation p.D127E 0.64 tolerated(0.18) benign(0.052) TCGA-CR-7402-01 1 39763349 39763349 A T MACF1 Nonsense_Mutation p.K810* 0.63 TCGA-CR-7402-01 1 43770797 43770797 C A TIE1 Silent p.R112R 0.45 TCGA-CR-7402-01 1 43770798 43770798 G T TIE1 Missense_Mutation p.R112L 0.46 deleterious(0.05) benign(0.082) TCGA-CR-7402-01 1 47689705 47689705 G A TAL1 Missense_Mutation p.P171L 0.53 deleterious(0) benign(0.004) TCGA-CR-7402-01 1 50661318 50661319 - A ELAVL4 Frame_Shift_Ins p.S216Kfs*53 0.35 TCGA-CR-7402-01 1 54645006 54645006 A T CYB5RL Missense_Mutation p.L187Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-CR-7402-01 1 57395001 57395001 G T C8B 3'UTR 0.54 TCGA-CR-7402-01 1 62728768 62728768 C T KANK4 Silent p.E845E 0.50 TCGA-CR-7402-01 1 65138857 65138857 G T CACHD1 Missense_Mutation p.D792Y 0.55 deleterious(0) probably_damaging(0.986) TCGA-CR-7402-01 1 66036415 66036415 C A LEPR Silent p.S100S 0.62 TCGA-CR-7402-01 1 67359072 67359072 C A WDR78 Missense_Mutation p.V124F 0.59 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 1 70493932 70493932 G A LRRC7 Missense_Mutation p.V587M 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-CR-7402-01 1 74670412 74670412 C G FPGT Missense_Mutation p.F227L 0.23 deleterious(0) possibly_damaging(0.851) TCGA-CR-7402-01 1 79106756 79106756 C A IFI44L Missense_Mutation p.L367I 0.66 tolerated(0.1) probably_damaging(0.995) TCGA-CR-7402-01 1 84417927 84417927 C A TTLL7 5'UTR 0.38 TCGA-CR-7402-01 1 86196153 86196153 G T COL24A1 3'UTR 0.60 TCGA-CR-7402-01 1 86435953 86435953 C - COL24A1 Frame_Shift_Del p.G807Efs*32 0.30 TCGA-CR-7402-01 1 89430571 89430571 C A CCBL2 Missense_Mutation p.V132L 0.52 deleterious(0.03) possibly_damaging(0.583) TCGA-CR-7402-01 1 97700482 97700482 T A DPYD Missense_Mutation p.I790F 0.58 deleterious(0) possibly_damaging(0.829) TCGA-CR-7402-01 1 97771816 97771816 C A DPYD Missense_Mutation p.R699M 0.21 deleterious(0.02) possibly_damaging(0.456) TCGA-CR-7402-01 1 99418732 99418732 C A LPPR5 Missense_Mutation p.S172I 0.55 deleterious(0.03) possibly_damaging(0.529) TCGA-CR-7402-01 20 14306911 14306911 A C FLRT3 Silent p.T414T 0.28 TCGA-CR-7402-01 20 17446125 17446125 G A PCSK2 Missense_Mutation p.V453M 0.29 deleterious(0) probably_damaging(0.985) TCGA-CR-7402-01 20 18724787 18724787 G T DTD1 Missense_Mutation p.R174I 0.39 deleterious(0) benign(0.425) TCGA-CR-7402-01 20 21142998 21142998 G T RP4-777D9.2 Intron 0.33 TCGA-CR-7402-01 20 22563227 22563227 G A FOXA2 Missense_Mutation p.S218F 0.27 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 20 23017238 23017238 C A SSTR4 Missense_Mutation p.P373Q 0.30 tolerated(0.08) benign(0.143) TCGA-CR-7402-01 20 23029284 23029284 C A THBD Missense_Mutation p.Q286H 0.40 tolerated(0.38) benign(0) TCGA-CR-7402-01 20 23064994 23064994 C G CD93 Missense_Mutation p.K612N 0.25 deleterious(0.01) possibly_damaging(0.804) TCGA-CR-7402-01 20 23476506 23476506 G C CST8 Missense_Mutation p.W128C 0.35 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 20 23860133 23860133 T A CST5 Nonsense_Mutation p.K61* 0.24 TCGA-CR-7402-01 20 24995843 24995843 C A ACSS1 Missense_Mutation p.A424S 0.33 deleterious(0.04) possibly_damaging(0.817) TCGA-CR-7402-01 20 2688610 2688610 G A EBF4 Silent p.G140G 0.24 TCGA-CR-7402-01 20 31601615 31601615 G T BPIFB2 Splice_Site p.X103_splice 0.23 TCGA-CR-7402-01 20 31601640 31601640 G C BPIFB2 Silent p.T111T 0.14 TCGA-CR-7402-01 20 33519801 33519801 G T GSS Missense_Mutation p.Q324K 0.40 tolerated(0.32) benign(0.005) TCGA-CR-7402-01 20 36993246 36993246 G A LBP Missense_Mutation p.R254H 0.37 tolerated(0.1) benign(0.052) TCGA-CR-7402-01 20 41306563 41306563 C A PTPRT Missense_Mutation p.G366C 0.45 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 20 42328423 42328423 C T MYBL2 Silent p.S230S 0.36 TCGA-CR-7402-01 20 56735866 56735866 G T C20orf85 Missense_Mutation p.Q134H 0.42 deleterious(0) probably_damaging(0.919) TCGA-CR-7402-01 20 57268861 57268861 C T NPEPL1 Silent p.Y73Y 0.45 TCGA-CR-7402-01 20 58330273 58330273 C T PHACTR3 Missense_Mutation p.P132L 0.31 tolerated(0.45) benign(0.002) TCGA-CR-7402-01 20 5903868 5903868 G A CHGB Missense_Mutation p.E360K 0.25 tolerated(0.7) benign(0.253) TCGA-CR-7402-01 20 61525097 61525097 C A DIDO1 Missense_Mutation p.V1008L 0.42 benign(0.004) TCGA-CR-7402-01 20 62830234 62830234 A T MYT1 Missense_Mutation p.D7V 0.26 benign(0.002) TCGA-CR-7402-01 20 7915261 7915261 C G HAO1 Missense_Mutation p.M53I 0.30 tolerated(0.75) benign(0.001) TCGA-CR-7402-01 21 15746151 15746151 C A HSPA13 Missense_Mutation p.E401D 0.39 tolerated(0.06) possibly_damaging(0.887) TCGA-CR-7402-01 21 15872886 15872886 C A SAMSN1 Missense_Mutation p.K312N 0.14 tolerated(0.07) benign(0.007) TCGA-CR-7402-01 21 28338577 28338577 C T ADAMTS5 Missense_Mutation p.R45Q 0.32 tolerated_low_confidence(0.45) benign(0.001) TCGA-CR-7402-01 21 31709335 31709335 G A KRTAP27-1 3'UTR 0.24 TCGA-CR-7402-01 21 31797760 31797760 C T KRTAP13-3 Nonsense_Mutation p.W157* 0.40 TCGA-CR-7402-01 21 33064243 33064243 T C SCAF4 Missense_Mutation p.M539V 0.25 benign(0.284) TCGA-CR-7402-01 21 45708269 45708269 A T AIRE Missense_Mutation p.M194L 0.34 tolerated(0.13) benign(0.026) TCGA-CR-7402-01 21 45750076 45750076 T A C21orf2 3'UTR 0.58 TCGA-CR-7402-01 21 47421935 47421935 C T COL6A1 Missense_Mutation p.H673Y 0.24 tolerated(0.57) possibly_damaging(0.76) TCGA-CR-7402-01 21 47851899 47851899 G T PCNT Missense_Mutation p.A2841S 0.31 possibly_damaging(0.739) TCGA-CR-7402-01 22 16279270 16279270 T C POTEH Missense_Mutation p.H318R 0.06 tolerated(0.36) benign(0.02) TCGA-CR-7402-01 22 17072618 17072618 C G CCT8L2 Missense_Mutation p.D275H 0.26 deleterious(0) benign(0.336) TCGA-CR-7402-01 22 17073049 17073049 T A CCT8L2 Missense_Mutation p.Q131L 0.26 deleterious(0.01) probably_damaging(0.917) TCGA-CR-7402-01 22 22322027 22322027 C G TOP3B Missense_Mutation p.R267P 0.32 deleterious(0.04) benign(0.21) TCGA-CR-7402-01 22 24480531 24480531 G T CABIN1 Splice_Site p.X971_splice 0.24 TCGA-CR-7402-01 22 29684679 29684679 G C EWSR1 Missense_Mutation p.S299T 0.40 tolerated(0.12) unknown(0) TCGA-CR-7402-01 22 31946321 31946321 A T SFI1 Missense_Mutation p.R177S 0.35 deleterious(0.04) possibly_damaging(0.493) TCGA-CR-7402-01 22 32072838 32072838 T A PRR14L 3'Flank 0.26 TCGA-CR-7402-01 22 32555017 32555017 C G C22orf42 Missense_Mutation p.Q62H 0.26 deleterious_low_confidence(0) benign(0.387) TCGA-CR-7402-01 22 37603377 37603377 T A SSTR3 Missense_Mutation p.T156S 0.36 deleterious(0.01) possibly_damaging(0.81) TCGA-CR-7402-01 22 39380220 39380220 G T APOBEC3B Missense_Mutation p.G53V 0.72 deleterious(0.02) possibly_damaging(0.655) TCGA-CR-7402-01 22 40042659 40042659 T C CACNA1I Missense_Mutation p.M412T 0.42 deleterious(0) possibly_damaging(0.827) TCGA-CR-7402-01 22 40417675 40417675 C T FAM83F Silent p.P387P 0.21 TCGA-CR-7402-01 22 41918884 41918884 G T ACO2 Missense_Mutation p.A397S 0.31 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CR-7402-01 22 45132772 45132772 C A PRR5 Missense_Mutation p.A294E 0.25 tolerated(0.26) benign(0.103) TCGA-CR-7402-01 22 46704670 46704670 C A GTSE1 Missense_Mutation p.R198S 0.33 tolerated(0.9) benign(0) TCGA-CR-7402-01 22 50315316 50315316 C A CRELD2 Silent p.R167R 0.22 TCGA-CR-7402-01 22 51237503 51237503 C G RPL23AP82 RNA 0.51 TCGA-CR-7402-01 2 102000150 102000150 T C CREG2 Silent p.P152P 0.30 TCGA-CR-7402-01 2 103353142 103353142 C G MFSD9 Missense_Mutation p.R43P 0.23 deleterious_low_confidence(0.05) benign(0.063) TCGA-CR-7402-01 2 106739524 106739524 C T UXS1 Missense_Mutation p.E221K 0.28 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 2 107021671 107021671 C G RGPD3 3'UTR 0.19 TCGA-CR-7402-01 2 108863754 108863754 G T SULT1C3 Missense_Mutation p.W35L 0.23 tolerated(0.65) benign(0) TCGA-CR-7402-01 2 112944822 112944822 G T FBLN7 Silent p.T353T 0.26 TCGA-CR-7402-01 2 112945094 112945094 G A FBLN7 3'UTR 0.27 TCGA-CR-7402-01 2 114503857 114503857 A T SLC35F5 Silent p.S159S 0.27 TCGA-CR-7402-01 2 11702672 11702672 C G GREB1 Missense_Mutation p.L81V 0.26 tolerated(0.17) benign(0.1) TCGA-CR-7402-01 2 120003239 120003239 T A STEAP3 Missense_Mutation p.V66E 0.26 deleterious(0) probably_damaging(0.975) TCGA-CR-7402-01 2 121747847 121747847 A G GLI2 Missense_Mutation p.M1453V 0.27 tolerated(0.09) possibly_damaging(0.824) TCGA-CR-7402-01 2 125175132 125175132 T C CNTNAP5 Missense_Mutation p.I165T 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-CR-7402-01 2 130910309 130910309 C A SMPD4 Missense_Mutation p.R807M 0.61 deleterious(0) probably_damaging(0.919) TCGA-CR-7402-01 2 131520349 131520349 G A AMER3 Missense_Mutation p.C235Y 0.17 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 2 133540264 133540264 G C NCKAP5 Missense_Mutation p.P1374A 0.35 tolerated(0.08) possibly_damaging(0.641) TCGA-CR-7402-01 2 135740765 135740765 A T MAP3K19 Intron 0.46 TCGA-CR-7402-01 2 1480964 1480964 C A TPO Missense_Mutation p.S309Y 0.25 deleterious(0) probably_damaging(0.976) TCGA-CR-7402-01 2 148696734 148696734 C A ORC4 Missense_Mutation p.M311I 0.31 tolerated(0.23) benign(0.017) TCGA-CR-7402-01 2 15470842 15470842 C A NBAS Missense_Mutation p.W1409C 0.24 tolerated(0.05) possibly_damaging(0.885) TCGA-CR-7402-01 2 163027550 163027550 G T FAP Missense_Mutation p.T741K 0.43 tolerated(0.24) benign(0.004) TCGA-CR-7402-01 2 1658260 1658260 C A PXDN Nonsense_Mutation p.G620* 0.31 TCGA-CR-7402-01 2 166019263 166019263 C A SCN3A Missense_Mutation p.C257F 0.51 tolerated(0.07) probably_damaging(0.989) TCGA-CR-7402-01 2 1680770 1680770 C T PXDN Silent p.S259S 0.27 TCGA-CR-7402-01 2 168105477 168105477 A T XIRP2 Silent p.P2525P 0.39 TCGA-CR-7402-01 2 170096254 170096254 A T LRP2 Silent p.G1359G 0.40 TCGA-CR-7402-01 2 170667535 170667535 A G SSB Silent p.L326L 0.33 TCGA-CR-7402-01 2 179392225 179392225 A G TTN Silent p.N35876N 0.40 TCGA-CR-7402-01 2 179457788 179457788 A T TTN Missense_Mutation p.N19686K 0.46 TCGA-CR-7402-01 2 179482516 179482516 A T TTN Silent p.A15854A 0.34 TCGA-CR-7402-01 2 179642072 179642072 G A TTN Intron 0.41 TCGA-CR-7402-01 2 183995143 183995143 T C NUP35 Intron 0.49 TCGA-CR-7402-01 2 1890319 1890319 T A MYT1L Missense_Mutation p.Q899H 0.31 deleterious(0.01) probably_damaging(0.967) TCGA-CR-7402-01 2 189854843 189854843 C A COL3A1 Silent p.R238R 0.35 TCGA-CR-7402-01 2 198950550 198950550 A T PLCL1 Missense_Mutation p.Q770L 0.35 tolerated(0.77) benign(0.012) TCGA-CR-7402-01 2 202137359 202137359 A G CASP8 Splice_Site p.X197_splice 0.33 TCGA-CR-7402-01 2 207176110 207176110 G T ZDBF2 Missense_Mutation p.M2286I 0.67 tolerated(0.65) benign(0) TCGA-CR-7402-01 2 209116227 209116227 C T IDH1 Missense_Mutation p.E17K 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-7402-01 2 209308084 209308084 G A PTH2R Missense_Mutation p.C174Y 0.47 deleterious(0) probably_damaging(0.997) TCGA-CR-7402-01 2 211085399 211085399 G T ACADL Missense_Mutation p.Q69K 0.43 tolerated(0.18) benign(0.05) TCGA-CR-7402-01 2 21230042 21230042 T C APOB Missense_Mutation p.Y3233C 0.40 possibly_damaging(0.88) TCGA-CR-7402-01 2 21235485 21235485 T A APOB Missense_Mutation p.T1419S 0.16 probably_damaging(0.985) TCGA-CR-7402-01 2 212812196 212812196 C - ERBB4 Frame_Shift_Del p.G127Efs*10 0.23 TCGA-CR-7402-01 2 215976318 215976318 A T ABCA12 Splice_Site p.X55_splice 0.47 TCGA-CR-7402-01 2 220095004 220095004 C T ANKZF1 Missense_Mutation p.P9S 0.34 tolerated_low_confidence(0.29) benign(0.002) TCGA-CR-7402-01 2 225639746 225639746 G T DOCK10 Missense_Mutation p.D1963E 0.30 tolerated(1) benign(0.012) TCGA-CR-7402-01 2 228881633 228881633 A C SPHKAP Missense_Mutation p.S1313A 0.36 deleterious(0) probably_damaging(0.997) TCGA-CR-7402-01 2 243061153 243061153 G T AC093642.5 RNA 0.47 TCGA-CR-7402-01 2 27360306 27360306 A T C2orf53 Missense_Mutation p.F298I 0.30 deleterious(0) probably_damaging(0.997) TCGA-CR-7402-01 2 29092590 29092590 C A TRMT61B Missense_Mutation p.G185V 0.26 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 2 29158393 29158393 C T WDR43 Missense_Mutation p.L482F 0.20 tolerated(0.3) possibly_damaging(0.788) TCGA-CR-7402-01 2 30959385 30959385 C G CAPN13 Missense_Mutation p.R569P 0.33 deleterious(0.03) probably_damaging(0.961) TCGA-CR-7402-01 2 32474682 32474682 G A NLRC4 Silent p.L751L 0.27 TCGA-CR-7402-01 2 32475967 32475967 C T NLRC4 Silent p.L322L 0.26 TCGA-CR-7402-01 2 33540329 33540329 G A LTBP1 Silent p.T1241T 0.27 TCGA-CR-7402-01 2 33741637 33741637 T C RASGRP3 Silent p.Y33Y 0.15 TCGA-CR-7402-01 2 40656936 40656936 G T SLC8A1 Missense_Mutation p.T162N 0.25 tolerated(0.22) benign(0.001) TCGA-CR-7402-01 2 50573942 50573942 C A NRXN1 Intron 0.31 TCGA-CR-7402-01 2 50779852 50779852 C T NRXN1 Silent p.E584E 0.29 TCGA-CR-7402-01 2 50779857 50779857 T C NRXN1 Missense_Mutation p.I583V 0.26 tolerated(1) benign(0.024) TCGA-CR-7402-01 2 51254661 51254661 G T NRXN1 Missense_Mutation p.R251S 0.14 tolerated(0.75) benign(0.028) TCGA-CR-7402-01 2 51254722 51254722 G T NRXN1 Missense_Mutation p.N230K 0.41 deleterious(0) possibly_damaging(0.646) TCGA-CR-7402-01 2 55756024 55756024 A T CCDC104 Missense_Mutation p.Q98L 0.12 deleterious(0) probably_damaging(0.965) TCGA-CR-7402-01 2 62053636 62053636 G T FAM161A Missense_Mutation p.A702D 0.33 tolerated(0.66) unknown(0) TCGA-CR-7402-01 2 63283445 63283446 - T OTX1 Frame_Shift_Ins p.L354Ffs*98 0.17 TCGA-CR-7402-01 2 66664968 66664968 C T MEIS1 Missense_Mutation p.H38Y 0.24 tolerated(0.3) probably_damaging(0.989) TCGA-CR-7402-01 2 70015233 70015233 G - ANXA4 Frame_Shift_Del p.E20Kfs*6 0.19 TCGA-CR-7402-01 2 71797809 71797809 C T DYSF Nonsense_Mutation p.R1056* 0.30 TCGA-CR-7402-01 2 73315415 73315415 G A RAB11FIP5 Missense_Mutation p.S444F 0.31 deleterious(0) possibly_damaging(0.526) TCGA-CR-7402-01 2 73315801 73315801 C G RAB11FIP5 Silent p.V315V 0.21 TCGA-CR-7402-01 2 74709692 74709692 G A CCDC142 Silent p.L91L 0.38 TCGA-CR-7402-01 2 74754875 74754875 G A AUP1 Missense_Mutation p.R277C 0.27 tolerated(0.18) benign(0.398) TCGA-CR-7402-01 2 74907398 74907398 T G SEMA4F 3'UTR 0.35 TCGA-CR-7402-01 2 77746849 77746849 G T LRRTM4 Missense_Mutation p.S49Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 2 79363902 79363902 T G REG1P RNA 0.17 TCGA-CR-7402-01 2 79364439 79364439 C A REG1P RNA 0.57 TCGA-CR-7402-01 2 80136847 80136847 G T CTNNA2 Missense_Mutation p.R327L 0.31 deleterious(0) probably_damaging(0.912) TCGA-CR-7402-01 2 80816527 80816527 C G CTNNA2 Silent p.A702A 0.38 TCGA-CR-7402-01 2 84518274 84518274 C A FUNDC2P2 RNA 0.39 TCGA-CR-7402-01 2 85829087 85829087 G C TMEM150A 5'UTR 0.38 TCGA-CR-7402-01 2 86350830 86350830 G T PTCD3 Nonsense_Mutation p.E221* 0.27 TCGA-CR-7402-01 2 89246986 89246986 G T IGKV1-5 Missense_Mutation p.P62T 0.28 deleterious(0.02) possibly_damaging(0.635) TCGA-CR-7402-01 2 89247251 89247251 A G IGKV1-5 Missense_Mutation p.L15P 0.26 deleterious(0) probably_damaging(0.994) TCGA-CR-7402-01 2 89326772 89326772 T C IGKV3-11 Missense_Mutation p.R81G 0.24 deleterious(0) benign(0.111) TCGA-CR-7402-01 2 95537514 95537514 C A TEKT4 Silent p.R64R 0.23 TCGA-CR-7402-01 2 9666299 9666299 C G ADAM17 Missense_Mutation p.D232H 0.26 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 2 96780851 96780851 C A ADRA2B Silent p.V346V 0.25 TCGA-CR-7402-01 2 97008569 97008569 G C NCAPH Missense_Mutation p.E147Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 2 97370351 97370351 C A LMAN2L 3'Flank 0.27 TCGA-CR-7402-01 2 99179952 99179952 C T INPP4A Missense_Mutation p.P632L 0.21 deleterious(0) probably_damaging(0.992) TCGA-CR-7402-01 3 108211406 108211406 G A MYH15 Missense_Mutation p.A291V 0.24 tolerated(0.11) benign(0.094) TCGA-CR-7402-01 3 108549617 108549617 G T TRAT1 Missense_Mutation p.K36N 0.17 tolerated(0.1) probably_damaging(0.971) TCGA-CR-7402-01 3 108568018 108568018 A G TRAT1 Missense_Mutation p.M74V 0.17 tolerated(0.66) benign(0.001) TCGA-CR-7402-01 3 119301305 119301305 C A ADPRH Silent p.R97R 0.15 TCGA-CR-7402-01 3 119348365 119348365 A T PLA1A 3'UTR 0.24 TCGA-CR-7402-01 3 120469827 120469827 A T GTF2E1 Missense_Mutation p.Q143L 0.21 deleterious(0.02) benign(0.134) TCGA-CR-7402-01 3 121001149 121001149 C A STXBP5L Missense_Mutation p.P716H 0.21 deleterious(0.01) probably_damaging(0.935) TCGA-CR-7402-01 3 121838297 121838297 T C CD86 Silent p.H302H 0.23 TCGA-CR-7402-01 3 122642512 122642512 G T SEMA5B Missense_Mutation p.N462K 0.18 deleterious(0.04) possibly_damaging(0.66) TCGA-CR-7402-01 3 123427705 123427705 C A MYLK Silent p.G660G 0.14 TCGA-CR-7402-01 3 123633847 123633847 G T CCDC14 Missense_Mutation p.H840N 0.16 tolerated(0.12) benign(0.009) TCGA-CR-7402-01 3 124303661 124303661 G C KALRN 5'UTR 0.27 TCGA-CR-7402-01 3 124377324 124377324 G T KALRN Missense_Mutation p.R119L 0.20 deleterious(0) possibly_damaging(0.804) TCGA-CR-7402-01 3 125879696 125879696 C A ALDH1L1 Missense_Mutation p.G53C 0.15 deleterious_low_confidence(0.01) benign(0.323) TCGA-CR-7402-01 3 126218903 126218903 C A UROC1 Missense_Mutation p.A474S 0.20 tolerated(0.06) probably_damaging(0.979) TCGA-CR-7402-01 3 126291216 126291216 C A TXNRD3NB Silent p.G57G 0.19 TCGA-CR-7402-01 3 128060074 128060074 A T EEFSEC Splice_Site p.X263_splice 0.21 TCGA-CR-7402-01 3 128516832 128516832 A C RAB7A Missense_Mutation p.S34R 0.21 deleterious(0.02) benign(0.288) TCGA-CR-7402-01 3 128780893 128780893 C G GP9 Missense_Mutation p.T104R 0.18 tolerated(0.22) possibly_damaging(0.599) TCGA-CR-7402-01 3 130442379 130442379 C G PIK3R4 Silent p.L620L 0.43 TCGA-CR-7402-01 3 130683850 130683850 T A ATP2C1 Silent p.T395T 0.55 TCGA-CR-7402-01 3 131624228 131624228 G T CPNE4 Missense_Mutation p.S20R 0.24 tolerated(0.18) benign(0.282) TCGA-CR-7402-01 3 133191254 133191254 G T BFSP2 Silent p.L363L 0.13 TCGA-CR-7402-01 3 133672524 133672524 T A SLCO2A1 Missense_Mutation p.Y236F 0.51 tolerated(0.17) benign(0.008) TCGA-CR-7402-01 3 138174129 138174129 C A ESYT3 Missense_Mutation p.L155M 0.15 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 3 138255957 138255957 T A CEP70 Intron 0.18 TCGA-CR-7402-01 3 141163889 141163889 A T ZBTB38 Missense_Mutation p.S887C 0.23 deleterious(0) possibly_damaging(0.792) TCGA-CR-7402-01 3 142030457 142030457 G C XRN1 Missense_Mutation p.Q1673E 0.14 tolerated_low_confidence(0.81) benign(0.027) TCGA-CR-7402-01 3 143292939 143292939 C A SLC9A9 Missense_Mutation p.G331C 0.10 deleterious(0) probably_damaging(0.979) TCGA-CR-7402-01 3 145938675 145938675 T G PLSCR4 Missense_Mutation p.E15D 0.24 tolerated(0.09) benign(0.029) TCGA-CR-7402-01 3 148596303 148596303 C A CPA3 Missense_Mutation p.S115R 0.64 deleterious(0) probably_damaging(0.964) TCGA-CR-7402-01 3 14939485 14939485 G A FGD5 Silent p.R983R 0.40 TCGA-CR-7402-01 3 155303945 155303945 C - PLCH1 Frame_Shift_Del p.G158Vfs*5 0.13 TCGA-CR-7402-01 3 157146130 157146130 G C VEPH1 Missense_Mutation p.A226G 0.12 deleterious(0) possibly_damaging(0.488) TCGA-CR-7402-01 3 159583964 159583964 G A IQCJ-SCHIP1 Missense_Mutation p.E334K 0.15 deleterious(0.01) probably_damaging(0.923) TCGA-CR-7402-01 3 164741509 164741509 T A SI Missense_Mutation p.Y983F 0.16 deleterious(0) possibly_damaging(0.908) TCGA-CR-7402-01 3 16475401 16475401 G T RFTN1 Missense_Mutation p.L97M 0.32 tolerated(0.16) probably_damaging(0.992) TCGA-CR-7402-01 3 168806817 168806817 G T MECOM Missense_Mutation p.Q1063K 0.20 deleterious(0.01) benign(0.197) TCGA-CR-7402-01 3 170781743 170781743 G T TNIK Missense_Mutation p.A1337E 0.55 deleterious(0) probably_damaging(0.995) TCGA-CR-7402-01 3 170805171 170805171 C T TNIK Missense_Mutation p.R949H 0.15 tolerated(0.2) benign(0.021) TCGA-CR-7402-01 3 172059019 172059019 C T FNDC3B Nonsense_Mutation p.Q657* 0.53 TCGA-CR-7402-01 3 172607397 172607397 G T SPATA16 Missense_Mutation p.T558K 0.48 tolerated_low_confidence(0.17) benign(0.005) TCGA-CR-7402-01 3 175184791 175184791 A G NAALADL2 Missense_Mutation p.H451R 0.17 tolerated(0.21) benign(0.006) TCGA-CR-7402-01 3 179418886 179418886 C A USP13 Missense_Mutation p.A149E 0.41 tolerated(0.06) benign(0.06) TCGA-CR-7402-01 3 182841971 182841971 C A LAMP3 Silent p.V383V 0.19 TCGA-CR-7402-01 3 182924003 182924003 C A MCF2L2 Splice_Site p.X905_splice 0.15 TCGA-CR-7402-01 3 183823166 183823166 C A HTR3E Missense_Mutation p.T250N 0.17 deleterious(0.02) possibly_damaging(0.77) TCGA-CR-7402-01 3 190326880 190326880 G T IL1RAP Silent p.L149L 0.18 TCGA-CR-7402-01 3 190995858 190995858 C A UTS2B Intron 0.26 TCGA-CR-7402-01 3 191179206 191179206 T G PYDC2 Silent p.S85S 0.14 TCGA-CR-7402-01 3 195012437 195012437 T A ACAP2 Silent p.T687T 0.14 TCGA-CR-7402-01 3 197746225 197746225 A T LMLN Missense_Mutation p.K482M 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-CR-7402-01 3 21465512 21465512 G T ZNF385D Silent p.P299P 0.47 TCGA-CR-7402-01 3 21606087 21606087 G T ZNF385D Nonsense_Mutation p.C85* 0.33 TCGA-CR-7402-01 3 30691784 30691784 A G TGFBR2 Missense_Mutation p.T121A 0.42 tolerated(0.07) possibly_damaging(0.512) TCGA-CR-7402-01 3 36899135 36899135 G T TRANK1 Missense_Mutation p.T649N 0.50 tolerated(0.28) benign(0.002) TCGA-CR-7402-01 3 38763808 38763808 C A SCN10A Nonsense_Mutation p.E1150* 0.36 TCGA-CR-7402-01 3 38946691 38946691 G T SCN11A Missense_Mutation p.T532N 0.49 tolerated(0.17) probably_damaging(0.998) TCGA-CR-7402-01 3 39374449 39374449 C T CCR8 Silent p.I209I 0.40 TCGA-CR-7402-01 3 42304950 42304950 A T CCK Missense_Mutation p.L58Q 0.36 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 3 44441904 44441904 G T TCAIM Missense_Mutation p.D315Y 0.30 deleterious(0.01) benign(0.218) TCGA-CR-7402-01 3 44488019 44488019 T C ZNF445 3'UTR 0.40 TCGA-CR-7402-01 3 47618790 47618790 C T CSPG5 Silent p.E242E 0.43 TCGA-CR-7402-01 3 53781378 53781378 C A CACNA1D Missense_Mutation p.R1093S 0.49 deleterious(0.05) benign(0.185) TCGA-CR-7402-01 3 64608244 64608244 C T ADAMTS9 Missense_Mutation p.G803D 0.45 tolerated(0.05) benign(0.232) TCGA-CR-7402-01 3 71804129 71804129 T A GPR27 Missense_Mutation p.V310E 0.38 tolerated(0.09) probably_damaging(0.937) TCGA-CR-7402-01 3 73004273 73004273 C A GXYLT2 Missense_Mutation p.L209I 0.48 tolerated(0.15) possibly_damaging(0.788) TCGA-CR-7402-01 3 73433878 73433878 C A PDZRN3 Missense_Mutation p.L613F 0.40 deleterious(0.04) probably_damaging(0.969) TCGA-CR-7402-01 3 75986715 75986715 T C ROBO2 Missense_Mutation p.V24A 0.20 tolerated_low_confidence(0.43) unknown(0) TCGA-CR-7402-01 3 87313582 87313582 C A POU1F1 Missense_Mutation p.A125S 0.54 tolerated_low_confidence(1) benign(0.001) TCGA-CR-7402-01 3 89391052 89391052 G T EPHA3 Missense_Mutation p.C373F 0.33 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 3 97454962 97454962 T C EPHA6 Missense_Mutation p.V1043A 0.55 tolerated(0.55) benign(0.029) TCGA-CR-7402-01 3 97868383 97868383 G A OR5H14 Missense_Mutation p.D52N 0.17 deleterious(0.03) benign(0.048) TCGA-CR-7402-01 3 99513943 99513943 C A COL8A1 Missense_Mutation p.P400T 0.11 tolerated(0.54) unknown(0) TCGA-CR-7402-01 4 102951361 102951361 C A BANK1 Silent p.A613A 0.33 TCGA-CR-7402-01 4 109088901 109088901 C T LEF1 Missense_Mutation p.G8D 0.28 tolerated(0.2) possibly_damaging(0.901) TCGA-CR-7402-01 4 109745314 109745314 G T COL25A1 Intron 0.31 TCGA-CR-7402-01 4 111470910 111470910 G T ENPEP Missense_Mutation p.G790V 0.20 deleterious(0) probably_damaging(0.996) TCGA-CR-7402-01 4 114274328 114274328 C A ANK2 Silent p.T1518T 0.27 TCGA-CR-7402-01 4 121958113 121958113 G C NDNF Missense_Mutation p.A338G 0.23 tolerated(0.39) benign(0.022) TCGA-CR-7402-01 4 13605783 13605783 G T BOD1L1 Nonsense_Mutation p.S914* 0.24 TCGA-CR-7402-01 4 142950038 142950038 T C INPP4B Missense_Mutation p.K891R 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7402-01 4 143235901 143235901 G T INPP4B Silent p.V129V 0.25 TCGA-CR-7402-01 4 144920591 144920591 G T GYPB Missense_Mutation p.Q50K 0.27 tolerated(0.06) possibly_damaging(0.621) TCGA-CR-7402-01 4 145035886 145035886 G T GYPA Missense_Mutation p.P131H 0.30 tolerated(0.29) possibly_damaging(0.847) TCGA-CR-7402-01 4 154525579 154525579 A T KIAA0922 Missense_Mutation p.N1139Y 0.20 deleterious(0.01) possibly_damaging(0.583) TCGA-CR-7402-01 4 155163899 155163899 C A DCHS2 Missense_Mutation p.G1868W 0.33 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 4 155505381 155505381 G C FGA Missense_Mutation p.N832K 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-CR-7402-01 4 155665738 155665738 G T LRAT Missense_Mutation p.R87L 0.28 tolerated(0.9) benign(0.007) TCGA-CR-7402-01 4 156696131 156696131 A T GUCY1B3 Missense_Mutation p.Q30L 0.30 tolerated(0.26) benign(0.102) TCGA-CR-7402-01 4 15780186 15780186 G T CD38 Missense_Mutation p.W50L 0.30 deleterious(0) probably_damaging(0.996) TCGA-CR-7402-01 4 158256999 158256999 G T GRIA2 Missense_Mutation p.W481C 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 4 164394427 164394427 T C TKTL2 Missense_Mutation p.M154V 0.27 tolerated(0.22) benign(0.008) TCGA-CR-7402-01 4 173873316 173873316 G T GALNTL6 Missense_Mutation p.K426N 0.28 tolerated(0.71) benign(0.002) TCGA-CR-7402-01 4 177604999 177604999 C A VEGFC 3'UTR 0.24 TCGA-CR-7402-01 4 184186193 184186193 G T WWC2 Missense_Mutation p.V658L 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-CR-7402-01 4 186533086 186533086 C T SORBS2 Missense_Mutation p.G1078S 0.18 deleterious(0) probably_damaging(0.99) TCGA-CR-7402-01 4 188924241 188924241 T A ZFP42 Missense_Mutation p.S94T 0.36 tolerated(0.15) benign(0.052) TCGA-CR-7402-01 4 189018271 189018271 G T TRIML2 Missense_Mutation p.T180K 0.24 deleterious(0.02) benign(0.305) TCGA-CR-7402-01 4 189060957 189060957 G T TRIML1 Missense_Mutation p.R82L 0.27 deleterious(0.03) possibly_damaging(0.578) TCGA-CR-7402-01 4 20255599 20255599 C A SLIT2 Missense_Mutation p.P54H 0.24 deleterious(0) probably_damaging(0.914) TCGA-CR-7402-01 4 20568976 20568976 C T SLIT2 Silent p.D939D 0.29 TCGA-CR-7402-01 4 25314461 25314461 C A ZCCHC4 Silent p.A10A 0.30 TCGA-CR-7402-01 4 2958516 2958516 A G NOP14 Missense_Mutation p.I118T 0.15 deleterious(0) possibly_damaging(0.491) TCGA-CR-7402-01 4 30725162 30725162 C T PCDH7 Silent p.T706T 0.28 TCGA-CR-7402-01 4 36230489 36230489 C G ARAP2 Missense_Mutation p.S207T 0.23 tolerated_low_confidence(0.24) benign(0.013) TCGA-CR-7402-01 4 37903711 37903711 C A TBC1D1 5'UTR 0.32 TCGA-CR-7402-01 4 37903712 37903712 C A TBC1D1 5'UTR 0.32 TCGA-CR-7402-01 4 37903767 37903767 C A TBC1D1 Silent p.V17V 0.30 TCGA-CR-7402-01 4 39408952 39408952 G T KLB Missense_Mutation p.S128I 0.24 deleterious(0) possibly_damaging(0.865) TCGA-CR-7402-01 4 4199579 4199579 C T OTOP1 Missense_Mutation p.V328M 0.30 deleterious(0) probably_damaging(0.976) TCGA-CR-7402-01 4 42022531 42022531 A T SLC30A9 Missense_Mutation p.S145C 0.31 deleterious(0) probably_damaging(0.96) TCGA-CR-7402-01 4 44450416 44450416 A T KCTD8 Missense_Mutation p.F42Y 0.17 deleterious(0.04) benign(0.004) TCGA-CR-7402-01 4 52860966 52860966 C A LRRC66 Missense_Mutation p.G741V 0.28 deleterious(0.05) benign(0.334) TCGA-CR-7402-01 4 55139799 55139799 G C PDGFRA Missense_Mutation p.R487P 0.25 tolerated(0.07) benign(0.056) TCGA-CR-7402-01 4 5527953 5527953 C T C4orf6 Silent p.D59D 0.26 TCGA-CR-7402-01 4 55598063 55598063 C - KIT Frame_Shift_Del p.A755Pfs*10 0.19 TCGA-CR-7402-01 4 55604710 55604710 A G KIT Missense_Mutation p.H973R 0.29 tolerated(0.33) benign(0.007) TCGA-CR-7402-01 4 57215852 57215852 A T AASDH Missense_Mutation p.S689T 0.22 tolerated(0.25) benign(0.022) TCGA-CR-7402-01 4 6107405 6107405 G T JAKMIP1 Missense_Mutation p.A140E 0.31 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 4 62933931 62933932 - A LPHN3 Intron 0.08 TCGA-CR-7402-01 4 6296916 6296916 G T WFS1 Missense_Mutation p.K287N 0.37 deleterious(0.01) possibly_damaging(0.705) TCGA-CR-7402-01 4 65275045 65275045 C A TECRL Missense_Mutation p.A9S 0.30 tolerated_low_confidence(0.27) benign(0.005) TCGA-CR-7402-01 4 66356139 66356139 C G EPHA5 Missense_Mutation p.G453A 0.26 tolerated(0.86) benign(0.002) TCGA-CR-7402-01 4 68919756 68919756 A T TMPRSS11F Missense_Mutation p.D396E 0.26 tolerated(0.09) benign(0.061) TCGA-CR-7402-01 4 70080161 70080161 C A UGT2B11 Missense_Mutation p.V94F 0.28 tolerated(0.19) possibly_damaging(0.72) TCGA-CR-7402-01 4 70823471 70823471 A T CSN2 Missense_Mutation p.Y66N 0.28 tolerated(0.1) possibly_damaging(0.86) TCGA-CR-7402-01 4 73205293 73205293 A T ADAMTS3 Missense_Mutation p.V260E 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-CR-7402-01 4 74318195 74318195 T A AFP Silent p.T502T 0.26 TCGA-CR-7402-01 4 860744 860745 - A GAK Frame_Shift_Ins p.A958Cfs*2 0.21 TCGA-CR-7402-01 4 89407376 89407376 T C HERC5 Silent p.T616T 0.26 TCGA-CR-7402-01 4 89407377 89407377 G T HERC5 Missense_Mutation p.V617L 0.27 tolerated(1) benign(0) TCGA-CR-7402-01 4 94006343 94006343 C A GRID2 Missense_Mutation p.P148T 0.27 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 4 96256777 96256777 C A UNC5C Missense_Mutation p.D44Y 0.27 deleterious(0) probably_damaging(0.98) TCGA-CR-7402-01 4 96761796 96761796 C A PDHA2 Silent p.V165V 0.26 TCGA-CR-7402-01 5 101606491 101606491 C T SLCO4C1 Silent p.R213R 0.20 TCGA-CR-7402-01 5 101627047 101627047 C T SLCO4C1 Missense_Mutation p.D207N 0.26 tolerated(0.32) benign(0.056) TCGA-CR-7402-01 5 114573587 114573587 C G PGGT1B Silent p.A149A 0.25 TCGA-CR-7402-01 5 114916308 114916308 T C TMED7-TICAM2 Missense_Mutation p.K385E 0.28 tolerated_low_confidence(0.49) benign(0.001) TCGA-CR-7402-01 5 115336169 115336169 G T AQPEP Nonsense_Mutation p.E519* 0.26 TCGA-CR-7402-01 5 121187730 121187730 C T FTMT Silent p.C24C 0.11 TCGA-CR-7402-01 5 123983092 123983092 G - ZNF608 Frame_Shift_Del p.Y996Ifs*33 0.25 TCGA-CR-7402-01 5 127671152 127671152 C T FBN2 Missense_Mutation p.C1281Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 5 130726861 130726861 T G CDC42SE2 3'UTR 0.44 TCGA-CR-7402-01 5 131953939 131953939 A T RAD50 Silent p.T1114T 0.31 TCGA-CR-7402-01 5 131993925 131993925 C A IL13 Missense_Mutation p.A16E 0.25 deleterious(0) unknown(0) TCGA-CR-7402-01 5 135394834 135394834 G T TGFBI Silent p.L578L 0.37 TCGA-CR-7402-01 5 137419813 137419813 G C WNT8A Missense_Mutation p.G12A 0.25 tolerated(0.51) benign(0.002) TCGA-CR-7402-01 5 13788868 13788868 G T DNAH5 Missense_Mutation p.D2868E 0.23 benign(0.417) TCGA-CR-7402-01 5 13864714 13864714 C A DNAH5 Missense_Mutation p.W1463L 0.29 possibly_damaging(0.637) TCGA-CR-7402-01 5 140167848 140167848 C G PCDHA1 Missense_Mutation p.A658G 0.18 deleterious_low_confidence(0.01) benign(0.238) TCGA-CR-7402-01 5 140167951 140167951 G A PCDHA1 Silent p.A692A 0.25 TCGA-CR-7402-01 5 140182402 140182402 G T PCDHA3 Silent p.A540A 0.27 TCGA-CR-7402-01 5 140182502 140182502 G A PCDHA3 Missense_Mutation p.G574S 0.33 tolerated_low_confidence(0.17) benign(0.048) TCGA-CR-7402-01 5 140203532 140203532 G T PCDHA5 Silent p.A724A 0.23 TCGA-CR-7402-01 5 140237321 140237321 C G PCDHA10 Missense_Mutation p.A563G 0.54 deleterious_low_confidence(0.02) benign(0.246) TCGA-CR-7402-01 5 140255363 140255363 C A PCDHA12 Nonsense_Mutation p.C102* 0.28 TCGA-CR-7402-01 5 140255364 140255364 A G PCDHA12 Missense_Mutation p.S103G 0.28 tolerated_low_confidence(0.06) benign(0.211) TCGA-CR-7402-01 5 140346602 140346602 C A PCDHAC2 Missense_Mutation p.A84E 0.29 deleterious(0.01) benign(0.038) TCGA-CR-7402-01 5 140433332 140433332 A T PCDHB1 Silent p.S759S 0.06 TCGA-CR-7402-01 5 140474516 140474516 G T PCDHB2 Missense_Mutation p.A48S 0.22 deleterious_low_confidence(0.01) benign(0.248) TCGA-CR-7402-01 5 140481907 140481907 G C PCDHB3 Silent p.S558S 0.28 TCGA-CR-7402-01 5 140559442 140559442 G A PCDHB8 Silent p.K609K 0.17 TCGA-CR-7402-01 5 140562178 140562178 T C PCDHB16 Missense_Mutation p.L15P 0.27 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CR-7402-01 5 140604444 140604444 A G PCDHB14 Missense_Mutation p.Y456C 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CR-7402-01 5 140625859 140625859 A T PCDHB15 Missense_Mutation p.N238I 0.25 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CR-7402-01 5 141059771 141059771 C A ARAP3 Missense_Mutation p.V95L 0.23 deleterious(0.01) benign(0.188) TCGA-CR-7402-01 5 141693814 141693814 C A SPRY4 Missense_Mutation p.S310I 0.26 deleterious(0.01) benign(0.043) TCGA-CR-7402-01 5 14488346 14488346 G T TRIO Missense_Mutation p.V2537L 0.30 benign(0.006) TCGA-CR-7402-01 5 145719828 145719828 T A POU4F3 Missense_Mutation p.S280T 0.30 tolerated(0.06) probably_damaging(0.945) TCGA-CR-7402-01 5 145969694 145969694 T A PPP2R2B Missense_Mutation p.K386M 0.31 tolerated(0.13) benign(0.074) TCGA-CR-7402-01 5 148407063 148407063 C A SH3TC2 Silent p.L744L 0.33 TCGA-CR-7402-01 5 149636159 149636159 C A CAMK2A Missense_Mutation p.G130W 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-CR-7402-01 5 149678016 149678016 A G ARSI Silent p.C157C 0.33 TCGA-CR-7402-01 5 154394597 154394597 A T KIF4B Missense_Mutation p.Q393L 0.23 deleterious(0.01) benign(0.097) TCGA-CR-7402-01 5 156479381 156479381 G T HAVCR1 Missense_Mutation p.H222N 0.26 tolerated(0.32) possibly_damaging(0.607) TCGA-CR-7402-01 5 156899365 156899365 G A NIPAL4 Silent p.L266L 0.32 TCGA-CR-7402-01 5 156929850 156929850 A T ADAM19 Nonsense_Mutation p.Y423* 0.29 TCGA-CR-7402-01 5 157181901 157181901 G T LSM11 Nonsense_Mutation p.E238* 0.36 TCGA-CR-7402-01 5 158753716 158753716 T G IL12B Missense_Mutation p.E25D 0.30 deleterious(0.03) benign(0.017) TCGA-CR-7402-01 5 160071164 160071164 A G ATP10B Silent p.V283V 0.18 TCGA-CR-7402-01 5 169188524 169188524 C A DOCK2 Missense_Mutation p.Q817K 0.24 tolerated(0.98) benign(0.002) TCGA-CR-7402-01 5 16935980 16935980 C A MYO10 5'UTR 0.40 TCGA-CR-7402-01 5 169454881 169454881 C T DOCK2 Silent p.I1132I 0.30 TCGA-CR-7402-01 5 170147332 170147332 C A KCNIP1 Missense_Mutation p.P76H 0.22 deleterious(0) probably_damaging(0.952) TCGA-CR-7402-01 5 171523476 171523476 T A STK10 Missense_Mutation p.D320V 0.28 deleterious(0) possibly_damaging(0.878) TCGA-CR-7402-01 5 176072481 176072481 G A EIF4E1B Missense_Mutation p.R193K 0.30 tolerated(0.5) benign(0.029) TCGA-CR-7402-01 5 176637567 176637567 A T NSD1 Missense_Mutation p.T723S 0.30 tolerated_low_confidence(0.43) benign(0.004) TCGA-CR-7402-01 5 176675254 176675254 G - NSD1 Frame_Shift_Del p.M1525Cfs*49 0.26 TCGA-CR-7402-01 5 176709538 176709538 C T NSD1 Nonsense_Mutation p.Q1989* 0.20 TCGA-CR-7402-01 5 178503532 178503532 G T ZNF354C Silent p.R38R 0.22 TCGA-CR-7402-01 5 180374703 180374703 C T BTNL8 Intron 0.29 TCGA-CR-7402-01 5 180424227 180424227 C G BTNL3 Missense_Mutation p.P138A 0.24 deleterious(0.01) possibly_damaging(0.891) TCGA-CR-7402-01 5 24537561 24537561 C A CDH10 Missense_Mutation p.D152Y 0.30 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 5 31323216 31323216 C A CDH6 Missense_Mutation p.T725K 0.26 tolerated(0.86) benign(0.028) TCGA-CR-7402-01 5 33457373 33457373 G A TARS Silent p.T316T 0.23 TCGA-CR-7402-01 5 33643537 33643537 A G ADAMTS12 Silent p.F506F 0.25 TCGA-CR-7402-01 5 35991303 35991303 G T UGT3A1 Missense_Mutation p.L14I 0.28 tolerated(0.09) probably_damaging(0.996) TCGA-CR-7402-01 5 36260950 36260950 C T RANBP3L Missense_Mutation p.D226N 0.19 tolerated(0.14) benign(0.391) TCGA-CR-7402-01 5 37181062 37181062 C A C5orf42 Nonsense_Mutation p.E1823* 0.23 TCGA-CR-7402-01 5 38438424 38438424 C T EGFLAM Silent p.S777S 0.25 TCGA-CR-7402-01 5 39289035 39289035 G C C9 Missense_Mutation p.L479V 0.34 deleterious(0) probably_damaging(0.997) TCGA-CR-7402-01 5 39342218 39342218 T A C9 Missense_Mutation p.Q53L 0.17 tolerated(0.1) benign(0.11) TCGA-CR-7402-01 5 40979928 40979928 C T C7 Missense_Mutation p.T756I 0.17 deleterious(0) benign(0.409) TCGA-CR-7402-01 5 54945036 54945036 T C SLC38A9 Silent p.P353P 0.29 TCGA-CR-7402-01 5 60188359 60188359 C A ERCC8 Intron 0.41 TCGA-CR-7402-01 5 60189240 60189240 C A ERCC8 Intron 0.29 TCGA-CR-7402-01 5 70819984 70819984 G T BDP1 Missense_Mutation p.R1869L 0.29 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 5 71016459 71016459 C G CARTPT 3'UTR 0.38 TCGA-CR-7402-01 5 72427521 72427521 A T TMEM171 Silent p.T313T 0.35 TCGA-CR-7402-01 5 7789793 7789793 C A ADCY2 Missense_Mutation p.N836K 0.22 tolerated(1) benign(0.013) TCGA-CR-7402-01 5 78378765 78378765 G A BHMT2 Missense_Mutation p.R195K 0.31 tolerated(0.21) benign(0.007) TCGA-CR-7402-01 5 79034639 79034639 C A CMYA5 Missense_Mutation p.R3351S 0.31 benign(0.001) TCGA-CR-7402-01 5 79470855 79470855 C T SERINC5 Missense_Mutation p.G158E 0.38 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 5 79855120 79855120 G T ANKRD34B Missense_Mutation p.P240H 0.24 deleterious(0.04) possibly_damaging(0.497) TCGA-CR-7402-01 5 82785914 82785914 T C VCAN Intron 0.21 TCGA-CR-7402-01 5 89930999 89930999 C T GPR98 Silent p.I636I 0.23 TCGA-CR-7402-01 5 89954097 89954097 T A GPR98 Splice_Site p.X1584_splice 0.30 TCGA-CR-7402-01 5 94353071 94353071 C A MCTP1 Missense_Mutation p.G280W 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 5 95234300 95234300 T A ELL2 Missense_Mutation p.Q390L 0.32 tolerated(0.34) benign(0.213) TCGA-CR-7402-01 5 99871504 99871504 G T FAM174A Silent p.G90G 0.35 TCGA-CR-7402-01 6 100838661 100838661 T A SIM1 Missense_Mutation p.N626I 0.29 tolerated_low_confidence(0.11) benign(0.283) TCGA-CR-7402-01 6 107069363 107069363 C T RTN4IP1 Nonsense_Mutation p.W144* 0.21 TCGA-CR-7402-01 6 111587866 111587866 G T KIAA1919 Missense_Mutation p.M367I 0.26 deleterious(0.01) possibly_damaging(0.766) TCGA-CR-7402-01 6 127836029 127836029 C A SOGA3 Missense_Mutation p.R422L 0.27 deleterious(0.01) possibly_damaging(0.905) TCGA-CR-7402-01 6 127912781 127912781 A T C6orf58 3'UTR 0.32 TCGA-CR-7402-01 6 130535481 130535481 C T SAMD3 Splice_Site p.X90_splice 0.27 TCGA-CR-7402-01 6 130536394 130536394 C G SAMD3 Missense_Mutation p.V9L 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-7402-01 6 132172336 132172336 G T ENPP1 Missense_Mutation p.S162I 0.36 tolerated(0.08) possibly_damaging(0.71) TCGA-CR-7402-01 6 132824653 132824653 C A STX7 Missense_Mutation p.G6V 0.32 deleterious(0) benign(0.421) TCGA-CR-7402-01 6 133072643 133072643 C G VNN2 Missense_Mutation p.A281P 0.33 deleterious(0.03) benign(0.406) TCGA-CR-7402-01 6 133110904 133110904 C G SLC18B1 Missense_Mutation p.G118R 0.26 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 6 138576847 138576847 C A KIAA1244 Silent p.R349R 0.25 TCGA-CR-7402-01 6 139170518 139170518 A C ECT2L Missense_Mutation p.Q339P 0.24 deleterious(0) possibly_damaging(0.451) TCGA-CR-7402-01 6 144263314 144263314 T C PLAGL1 Silent p.K213K 0.28 TCGA-CR-7402-01 6 146756028 146756028 G T GRM1 3'UTR 0.50 TCGA-CR-7402-01 6 150094294 150094294 G T PCMT1 Missense_Mutation p.A119S 0.31 deleterious(0) probably_damaging(0.993) TCGA-CR-7402-01 6 151670376 151670376 C A AKAP12 Missense_Mutation p.P284T 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7402-01 6 151673277 151673277 T A AKAP12 Missense_Mutation p.S1251T 0.26 tolerated(0.41) benign(0.014) TCGA-CR-7402-01 6 152382208 152382208 C T ESR1 Silent p.L440L 0.47 TCGA-CR-7402-01 6 152529267 152529267 C A SYNE1 Missense_Mutation p.R7555L 0.32 possibly_damaging(0.588) TCGA-CR-7402-01 6 152725381 152725381 T G SYNE1 Missense_Mutation p.L2264F 0.40 probably_damaging(0.934) TCGA-CR-7402-01 6 152831418 152831418 G A SYNE1 Missense_Mutation p.P164L 0.28 benign(0.007) TCGA-CR-7402-01 6 15452388 15452388 A C JARID2 Missense_Mutation p.T159P 0.24 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 6 154762449 154762449 C G CNKSR3 Missense_Mutation p.D162H 0.31 deleterious(0) possibly_damaging(0.878) TCGA-CR-7402-01 6 158569896 158569896 C G SERAC1 Splice_Site p.X119_splice 0.22 TCGA-CR-7402-01 6 166571922 166571922 C A T Nonsense_Mutation p.G397* 0.24 TCGA-CR-7402-01 6 168434642 168434642 G A KIF25 Missense_Mutation p.G83D 0.28 tolerated(0.56) benign(0.01) TCGA-CR-7402-01 6 24533787 24533787 G A ALDH5A1 Silent p.L498L 0.53 TCGA-CR-7402-01 6 25779520 25779520 C T SLC17A4 3'UTR 0.50 TCGA-CR-7402-01 6 28228212 28228212 C T NKAPL Missense_Mutation p.R355C 0.13 deleterious(0.03) probably_damaging(0.952) TCGA-CR-7402-01 6 29080330 29080330 T A OR2J3 Nonsense_Mutation p.Y221* 0.10 TCGA-CR-7402-01 6 30860151 30860151 A G DDR1 Missense_Mutation p.M311V 0.46 tolerated(0.41) benign(0.009) TCGA-CR-7402-01 6 31783643 31783643 C T HSPA1A Missense_Mutation p.T37I 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CR-7402-01 6 32122555 32122555 G T PPT2 Splice_Site p.X67_splice 0.44 TCGA-CR-7402-01 6 32169141 32169141 C T NOTCH4 Missense_Mutation p.A1298T 0.63 tolerated(0.08) benign(0.025) TCGA-CR-7402-01 6 32904865 32904865 C A HLA-DMB Intron 0.65 TCGA-CR-7402-01 6 33146101 33146101 C A COL11A2 Missense_Mutation p.G515V 0.10 probably_damaging(0.996) TCGA-CR-7402-01 6 33262943 33262943 C T RGL2 Silent p.E390E 0.14 TCGA-CR-7402-01 6 36766231 36766231 C A CPNE5 Splice_Site p.X109_splice 0.48 TCGA-CR-7402-01 6 38885916 38885916 G A DNAH8 Silent p.K3291K 0.21 TCGA-CR-7402-01 6 41304148 41304148 T G NCR2 Missense_Mutation p.Y126D 0.66 tolerated(0.15) benign(0.175) TCGA-CR-7402-01 6 42236484 42236484 C A TRERF1 Missense_Mutation p.R282L 0.56 deleterious_low_confidence(0.04) possibly_damaging(0.63) TCGA-CR-7402-01 6 42890971 42890971 T G PTCRA Missense_Mutation p.L89V 0.15 tolerated(0.29) benign(0.175) TCGA-CR-7402-01 6 49456174 49456174 G T CENPQ Missense_Mutation p.R196I 0.51 deleterious(0) benign(0.116) TCGA-CR-7402-01 6 49578777 49578777 G T RHAG Missense_Mutation p.L343I 0.51 tolerated(1) benign(0.075) TCGA-CR-7402-01 6 49665662 49665662 C A CRISP2 Missense_Mutation p.W142C 0.13 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 6 51750673 51750673 C A PKHD1 Missense_Mutation p.G2403C 0.24 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 6 51947209 51947209 C T PKHD1 Missense_Mutation p.V88M 0.55 tolerated(0.05) benign(0.316) TCGA-CR-7402-01 6 54173485 54173485 G T TINAG Missense_Mutation p.R46L 0.17 tolerated(0.16) probably_damaging(0.985) TCGA-CR-7402-01 6 54214631 54214631 C T TINAG Silent p.P339P 0.60 TCGA-CR-7402-01 6 56347649 56347649 C A DST Missense_Mutation p.R4455S 0.22 probably_damaging(0.956) TCGA-CR-7402-01 6 62390894 62390894 T C KHDRBS2 Missense_Mutation p.R342G 0.34 deleterious(0) probably_damaging(0.987) TCGA-CR-7402-01 6 70847590 70847590 T A COL19A1 Missense_Mutation p.L466Q 0.26 tolerated(0.65) benign(0.038) TCGA-CR-7402-01 6 70859624 70859624 G T COL19A1 Missense_Mutation p.G641V 0.29 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 6 72596711 72596711 C A RIMS1 5'Flank 0.25 TCGA-CR-7402-01 6 75893061 75893061 C T COL12A1 Silent p.V532V 0.28 TCGA-CR-7402-01 6 84350842 84350842 T C SNAP91 Silent p.R246R 0.50 TCGA-CR-7402-01 6 86223949 86223949 C A SNX14 Missense_Mutation p.R799L 0.29 deleterious(0.02) possibly_damaging(0.809) TCGA-CR-7402-01 6 87725582 87725582 A T HTR1E Missense_Mutation p.H177L 0.21 tolerated(0.13) probably_damaging(1) TCGA-CR-7402-01 6 88854864 88854864 A T CNR1 Missense_Mutation p.F44I 0.36 tolerated_low_confidence(0.23) benign(0.006) TCGA-CR-7402-01 6 89790894 89790894 C G PNRC1 Missense_Mutation p.P94R 0.27 tolerated(0.42) probably_damaging(0.958) TCGA-CR-7402-01 6 9897106 9897106 G T OFCC1 Intron 0.13 TCGA-CR-7402-01 7 100225246 100225246 A T TFR2 Missense_Mutation p.F574Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-CR-7402-01 7 100676773 100676773 T C MUC17 Silent p.S692S 0.31 TCGA-CR-7402-01 7 103292197 103292197 C G RELN Missense_Mutation p.W601C 0.28 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 7 105204333 105204333 C T RINT1 Missense_Mutation p.R609C 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-CR-7402-01 7 105204334 105204334 G A RINT1 Missense_Mutation p.R609H 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-CR-7402-01 7 107643396 107643396 C T LAMB1 5'UTR 0.18 TCGA-CR-7402-01 7 107746424 107746424 A G LAMB4 Silent p.L236L 0.26 TCGA-CR-7402-01 7 110762957 110762957 C A LRRN3 Silent p.P43P 0.25 TCGA-CR-7402-01 7 111540519 111540519 C A DOCK4 Missense_Mutation p.S464I 0.30 deleterious(0) possibly_damaging(0.903) TCGA-CR-7402-01 7 117023080 117023080 A T ASZ1 Missense_Mutation p.L258M 0.19 tolerated(0.08) possibly_damaging(0.529) TCGA-CR-7402-01 7 117246788 117246788 C A CFTR Missense_Mutation p.T990N 0.20 deleterious(0) benign(0.083) TCGA-CR-7402-01 7 123508735 123508735 A G HYAL4 Silent p.E136E 0.22 TCGA-CR-7402-01 7 127223058 127223058 C T GCC1 Silent p.A446A 0.25 TCGA-CR-7402-01 7 12728069 12728069 G C ARL4A Missense_Mutation p.G64R 0.20 deleterious(0.04) benign(0.103) TCGA-CR-7402-01 7 130353845 130353845 G T TSGA13 3'UTR 0.28 TCGA-CR-7402-01 7 137237200 137237200 G T DGKI Missense_Mutation p.P688T 0.28 deleterious(0) probably_damaging(0.931) TCGA-CR-7402-01 7 137271843 137271843 C A DGKI Silent p.G475G 0.24 TCGA-CR-7402-01 7 139756947 139756947 G A PARP12 Nonsense_Mutation p.Q157* 0.26 TCGA-CR-7402-01 7 140244499 140244499 G C DENND2A Missense_Mutation p.S749C 0.24 tolerated(1) benign(0.053) TCGA-CR-7402-01 7 141673292 141673292 G T TAS2R38 Missense_Mutation p.F66L 0.29 tolerated(0.16) benign(0.026) TCGA-CR-7402-01 7 142919319 142919319 G C TAS2R40 Missense_Mutation p.G50R 0.25 tolerated(0.16) benign(0.006) TCGA-CR-7402-01 7 143453434 143453434 G T CTAGE6 Missense_Mutation p.L440I 0.08 deleterious(0.01) benign(0.331) TCGA-CR-7402-01 7 143657134 143657134 G T OR2F1 Missense_Mutation p.R24L 0.35 deleterious(0) benign(0.019) TCGA-CR-7402-01 7 143747689 143747689 G T OR2A5 Silent p.L65L 0.18 TCGA-CR-7402-01 7 143793100 143793100 A G OR2A12 Silent p.L300L 0.27 TCGA-CR-7402-01 7 143826284 143826284 T C OR2A14 Missense_Mutation p.C27R 0.26 deleterious(0) benign(0.188) TCGA-CR-7402-01 7 149462862 149462862 G A ZNF467 Silent p.P243P 0.35 TCGA-CR-7402-01 7 151711783 151711783 A G GALNTL5 Missense_Mutation p.I361V 0.27 tolerated(0.36) benign(0.038) TCGA-CR-7402-01 7 15601569 15601569 C G AGMO 5'UTR 0.39 TCGA-CR-7402-01 7 15601583 15601583 A T AGMO 5'UTR 0.34 TCGA-CR-7402-01 7 157364177 157364177 T C PTPRN2 Missense_Mutation p.N931S 0.24 deleterious(0.02) benign(0.368) TCGA-CR-7402-01 7 158334258 158334258 G A PTPRN2 Intron 0.33 TCGA-CR-7402-01 7 21628907 21628907 T A DNAH11 Silent p.R685R 0.35 TCGA-CR-7402-01 7 24331380 24331380 C A NPY 3'UTR 0.28 TCGA-CR-7402-01 7 27196162 27196162 C T HOXA7 Translation_Start_Site p.M1? 0.24 deleterious(0) possibly_damaging(0.543) TCGA-CR-7402-01 7 31682573 31682573 G A CCDC129 Missense_Mutation p.R556K 0.29 tolerated(0.87) benign(0.069) TCGA-CR-7402-01 7 31890356 31890356 C G PDE1C Splice_Site p.X311_splice 0.27 TCGA-CR-7402-01 7 31917614 31917614 C G PDE1C Missense_Mutation p.S214T 0.21 tolerated(0.28) possibly_damaging(0.468) TCGA-CR-7402-01 7 32590986 32590986 C T AVL9 Missense_Mutation p.T138I 0.12 deleterious(0.01) probably_damaging(0.963) TCGA-CR-7402-01 7 35673920 35673920 A G HERPUD2 Splice_Site p.X353_splice 0.25 TCGA-CR-7402-01 7 37903047 37903047 C A NME8 Nonsense_Mutation p.S146* 0.23 TCGA-CR-7402-01 7 37934211 37934211 G C NME8 Missense_Mutation p.V515L 0.28 deleterious(0.03) benign(0) TCGA-CR-7402-01 7 37947013 37947013 T G SFRP4 3'UTR 0.24 TCGA-CR-7402-01 7 37951857 37951857 C A SFRP4 Missense_Mutation p.D219Y 0.26 deleterious(0) probably_damaging(0.964) TCGA-CR-7402-01 7 37951858 37951858 C G SFRP4 Silent p.V218V 0.27 TCGA-CR-7402-01 7 40234623 40234623 G C SUGCT Missense_Mutation p.E157Q 0.24 tolerated(0.11) benign(0.017) TCGA-CR-7402-01 7 40498771 40498771 A G SUGCT Silent p.K327K 0.17 TCGA-CR-7402-01 7 4091359 4091359 G C SDK1 Silent p.T936T 0.31 TCGA-CR-7402-01 7 42005670 42005670 C A GLI3 Missense_Mutation p.G1001C 0.44 deleterious(0.04) possibly_damaging(0.908) TCGA-CR-7402-01 7 47408665 47408665 G T TNS3 Silent p.G526G 0.40 TCGA-CR-7402-01 7 47474985 47474985 C T TNS3 Nonsense_Mutation p.W73* 0.23 TCGA-CR-7402-01 7 48080958 48080958 G T C7orf57 Missense_Mutation p.R28L 0.19 deleterious(0.03) benign(0.099) TCGA-CR-7402-01 7 4830976 4830976 G T AP5Z1 Missense_Mutation p.S795I 0.50 deleterious(0) possibly_damaging(0.681) TCGA-CR-7402-01 7 48443395 48443395 G T ABCA13 Missense_Mutation p.V3997L 0.26 probably_damaging(0.986) TCGA-CR-7402-01 7 48619833 48619833 C A ABCA13 Missense_Mutation p.L4790M 0.40 possibly_damaging(0.796) TCGA-CR-7402-01 7 50070687 50070687 C A ZPBP Splice_Site p.X236_splice 0.07 TCGA-CR-7402-01 7 51261227 51261227 T A COBL Missense_Mutation p.H102L 0.16 deleterious(0.03) possibly_damaging(0.466) TCGA-CR-7402-01 7 5662355 5662355 G T RNF216 3'UTR 0.39 TCGA-CR-7402-01 7 57188157 57188157 T G ZNF479 Missense_Mutation p.E322A 0.29 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 7 57529257 57529257 T C ZNF716 Missense_Mutation p.S364P 0.28 tolerated(0.07) benign(0.003) TCGA-CR-7402-01 7 6189425 6189425 G T USP42 Missense_Mutation p.R533L 0.29 tolerated(0.1) possibly_damaging(0.827) TCGA-CR-7402-01 7 64166767 64166767 G T ZNF107 Missense_Mutation p.V29L 0.39 tolerated(0.1) benign(0.077) TCGA-CR-7402-01 7 64863788 64863788 A G ZNF92 Missense_Mutation p.E254G 0.42 deleterious(0) benign(0.246) TCGA-CR-7402-01 7 71036356 71036356 A G WBSCR17 Missense_Mutation p.Y350C 0.29 deleterious(0.01) possibly_damaging(0.867) TCGA-CR-7402-01 7 72717824 72717824 T A NSUN5 Missense_Mutation p.R382W 0.26 deleterious(0) probably_damaging(0.949) TCGA-CR-7402-01 7 7278538 7278538 T A C1GALT1 Nonsense_Mutation p.Y291* 0.29 TCGA-CR-7402-01 7 73279506 73279506 G T WBSCR28 Missense_Mutation p.V86F 0.31 deleterious(0) possibly_damaging(0.904) TCGA-CR-7402-01 7 73969543 73969543 G T GTF2IRD1 Missense_Mutation p.M684I 0.27 tolerated(0.4) benign(0) TCGA-CR-7402-01 7 80285972 80285972 C T CD36 Silent p.N79N 0.18 TCGA-CR-7402-01 7 82451863 82451863 C A PCLO Silent p.G4913G 0.28 TCGA-CR-7402-01 7 86416093 86416093 C A GRM3 Missense_Mutation p.P329T 0.24 tolerated(0.42) benign(0.019) TCGA-CR-7402-01 7 87160614 87160614 C G ABCB1 Missense_Mutation p.G894A 0.38 deleterious(0.02) possibly_damaging(0.815) TCGA-CR-7402-01 7 92134134 92134134 C A PEX1 Silent p.L661L 0.26 TCGA-CR-7402-01 7 94944746 94944746 A G PON1 Silent p.L86L 0.27 TCGA-CR-7402-01 7 99084446 99084446 G C ZNF789 Missense_Mutation p.E205Q 0.38 tolerated(0.07) possibly_damaging(0.483) TCGA-CR-7402-01 7 99124011 99124011 A C ZKSCAN5 Missense_Mutation p.K450Q 0.28 deleterious(0.05) probably_damaging(0.963) TCGA-CR-7402-01 7 99170651 99170651 G C ZNF655 Missense_Mutation p.S342T 0.26 tolerated(0.13) benign(0.294) TCGA-CR-7402-01 7 99445786 99445786 T C CYP3A43 Intron 0.44 TCGA-CR-7402-01 8 102656368 102656368 C G GRHL2 Silent p.V509V 0.24 TCGA-CR-7402-01 8 102656369 102656369 C T GRHL2 Missense_Mutation p.L510F 0.26 tolerated(0.7) benign(0.197) TCGA-CR-7402-01 8 104068161 104068161 G A ATP6V1C1 Missense_Mutation p.S213N 0.22 deleterious(0.01) possibly_damaging(0.451) TCGA-CR-7402-01 8 10470038 10470038 T A RP1L1 Missense_Mutation p.R524W 0.25 benign(0.073) TCGA-CR-7402-01 8 104898151 104898151 C G RIMS2 Missense_Mutation p.P442A 0.18 tolerated_low_confidence(0.05) possibly_damaging(0.729) TCGA-CR-7402-01 8 105027684 105027684 G A RIMS2 Intron 0.44 TCGA-CR-7402-01 8 108913235 108913235 G T RSPO2 3'UTR 0.29 TCGA-CR-7402-01 8 110980754 110980754 C A KCNV1 Nonsense_Mutation p.G356* 0.39 TCGA-CR-7402-01 8 113246700 113246700 T C CSMD3 Missense_Mutation p.Y3545C 0.29 deleterious(0) possibly_damaging(0.894) TCGA-CR-7402-01 8 113256746 113256746 G T CSMD3 Missense_Mutation p.L3427I 0.21 deleterious(0) possibly_damaging(0.705) TCGA-CR-7402-01 8 113418923 113418923 G A CSMD3 Missense_Mutation p.S1880F 0.31 deleterious(0) probably_damaging(0.989) TCGA-CR-7402-01 8 124657916 124657916 G T KLHL38 3'UTR 0.32 TCGA-CR-7402-01 8 131861992 131861992 G C ADCY8 Silent p.V756V 0.21 TCGA-CR-7402-01 8 133816972 133816972 T G PHF20L1 Silent p.L278L 0.26 TCGA-CR-7402-01 8 133899673 133899673 G T TG Missense_Mutation p.A686S 0.29 tolerated(1) benign(0.012) TCGA-CR-7402-01 8 134050883 134050883 C A SLA Silent p.L279L 0.32 TCGA-CR-7402-01 8 13959967 13959967 C A SGCZ Missense_Mutation p.R221L 0.26 deleterious(0) possibly_damaging(0.538) TCGA-CR-7402-01 8 145626066 145626066 C T CPSF1 Missense_Mutation p.G229R 0.30 deleterious(0.02) probably_damaging(1) TCGA-CR-7402-01 8 19822910 19822910 G T LPL 3'UTR 0.24 TCGA-CR-7402-01 8 20075667 20075667 G A ATP6V1B2 Missense_Mutation p.A424T 0.29 deleterious(0.01) possibly_damaging(0.597) TCGA-CR-7402-01 8 21560483 21560483 G C GFRA2 Missense_Mutation p.A351G 0.29 deleterious(0) possibly_damaging(0.805) TCGA-CR-7402-01 8 22675246 22675246 G T PEBP4 Silent p.G87G 0.34 TCGA-CR-7402-01 8 25715905 25715905 G T EBF2 Silent p.P486P 0.34 TCGA-CR-7402-01 8 27295006 27295006 A G PTK2B Missense_Mutation p.Y507C 0.29 deleterious(0.03) possibly_damaging(0.691) TCGA-CR-7402-01 8 27641568 27641569 - A ESCO2 Frame_Shift_Ins p.R338Kfs*5 0.17 TCGA-CR-7402-01 8 35406972 35406972 G T UNC5D Missense_Mutation p.G89V 0.36 deleterious(0) probably_damaging(0.999) TCGA-CR-7402-01 8 37914654 37914654 G T EIF4EBP1 Silent p.V67V 0.20 TCGA-CR-7402-01 8 38853858 38853858 T C TM2D2 Missense_Mutation p.H34R 0.33 tolerated_low_confidence(0.2) benign(0.014) TCGA-CR-7402-01 8 48746771 48746771 T C PRKDC Missense_Mutation p.D2712G 0.32 benign(0.073) TCGA-CR-7402-01 8 52384809 52384809 G T PXDNL Silent p.T250T 0.27 TCGA-CR-7402-01 8 55537480 55537480 C T RP1 Silent p.T346T 0.32 TCGA-CR-7402-01 8 56436507 56436507 C A XKR4 Missense_Mutation p.D558E 0.24 tolerated(0.8) benign(0.003) TCGA-CR-7402-01 8 56675124 56675124 T C TMEM68 Intron 0.31 TCGA-CR-7402-01 8 61121342 61121342 G T CA8 3'UTR 0.24 TCGA-CR-7402-01 8 62566183 62566183 G A ASPH Missense_Mutation p.P120L 0.18 tolerated_low_confidence(0.18) benign(0.021) TCGA-CR-7402-01 8 66605983 66605983 A T MTFR1 Silent p.S90S 0.38 TCGA-CR-7402-01 8 69002942 69002942 C A PREX2 Missense_Mutation p.P748T 0.20 deleterious(0.03) possibly_damaging(0.756) TCGA-CR-7402-01 8 70476335 70476335 G C SULF1 Missense_Mutation p.R42P 0.27 deleterious(0) probably_damaging(0.995) TCGA-CR-7402-01 8 75929588 75929588 G C CRISPLD1 Missense_Mutation p.G344R 0.39 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 8 7686529 7686529 C T DEFB106A 3'UTR 0.27 TCGA-CR-7402-01 8 77765155 77765155 C A ZFHX4 Missense_Mutation p.P2000T 0.28 possibly_damaging(0.803) TCGA-CR-7402-01 8 77775784 77775784 C A ZFHX4 Silent p.L3278L 0.26 TCGA-CR-7402-01 8 7806692 7806692 G A ZNF705B Silent p.Q18Q 0.45 TCGA-CR-7402-01 8 7806693 7806693 G T ZNF705B Nonsense_Mutation p.E19* 0.45 TCGA-CR-7402-01 8 81599465 81599465 C G ZNF704 Missense_Mutation p.R185T 0.24 deleterious(0) probably_damaging(0.917) TCGA-CR-7402-01 8 81605276 81605276 A C ZNF704 Silent p.T96T 0.25 TCGA-CR-7402-01 8 8185684 8185684 G A SGK223 Missense_Mutation p.H870Y 0.27 benign(0.142) TCGA-CR-7402-01 8 87165148 87165148 C A ATP6V0D2 Missense_Mutation p.A332E 0.27 deleterious(0) probably_damaging(0.978) TCGA-CR-7402-01 8 8750112 8750112 G C MFHAS1 Missense_Mutation p.Q153E 0.32 tolerated(1) benign(0.023) TCGA-CR-7402-01 8 88885723 88885723 G T DCAF4L2 Silent p.L159L 0.28 TCGA-CR-7402-01 8 91929810 91929810 C A NECAB1 Missense_Mutation p.L150M 0.35 deleterious(0.01) benign(0.086) TCGA-CR-7402-01 8 93017294 93017294 C A RUNX1T1 Intron 0.23 TCGA-CR-7402-01 8 95161033 95161033 C T CDH17 Silent p.V622V 0.29 TCGA-CR-7402-01 8 95543280 95543280 C A KIAA1429 Missense_Mutation p.S173I 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-CR-7402-01 8 9609323 9609323 G T TNKS Missense_Mutation p.G1013C 0.28 deleterious(0.04) probably_damaging(0.915) TCGA-CR-7402-01 8 98731417 98731417 G T MTDH Missense_Mutation p.Q507H 0.31 deleterious(0.05) probably_damaging(0.983) TCGA-CR-7402-01 8 99779536 99779536 T A STK3 Missense_Mutation p.Q85H 0.28 deleterious(0.04) probably_damaging(0.972) TCGA-CR-7402-01 9 101216274 101216274 A G GABBR2 Missense_Mutation p.F409L 0.51 tolerated(0.65) benign(0.03) TCGA-CR-7402-01 9 105765547 105765547 T C CYLC2 Splice_Site p.X60_splice 0.23 TCGA-CR-7402-01 9 107379790 107379790 C T OR13C9 Silent p.E232E 0.18 TCGA-CR-7402-01 9 116353656 116353656 G T RGS3 Missense_Mutation p.R1020L 0.28 tolerated(0.14) benign(0.115) TCGA-CR-7402-01 9 117092788 117092788 A T ORM2 Missense_Mutation p.Q63H 0.38 tolerated(0.2) benign(0.012) TCGA-CR-7402-01 9 117849088 117849088 C A TNC Nonsense_Mutation p.E308* 0.41 TCGA-CR-7402-01 9 118950331 118950331 G T PAPPA Silent p.G438G 0.21 TCGA-CR-7402-01 9 119976723 119976723 C A ASTN2 Missense_Mutation p.R310L 0.23 deleterious_low_confidence(0) unknown(0) TCGA-CR-7402-01 9 122075568 122075568 G A BRINP1 Silent p.P22P 0.44 TCGA-CR-7402-01 9 123177356 123177356 C G CDK5RAP2 Missense_Mutation p.R1420P 0.19 deleterious(0) probably_damaging(0.969) TCGA-CR-7402-01 9 123875817 123875817 A G CNTRL Missense_Mutation p.Y387C 0.29 probably_damaging(0.999) TCGA-CR-7402-01 9 125004254 125004254 T G RBM18 Missense_Mutation p.Y161S 0.21 tolerated(0.22) benign(0.004) TCGA-CR-7402-01 9 125154751 125154751 C A PTGS1 Nonsense_Mutation p.Y576* 0.23 TCGA-CR-7402-01 9 125512443 125512443 T C OR1L6 Missense_Mutation p.M106T 0.19 tolerated(0.07) benign(0.103) TCGA-CR-7402-01 9 130241717 130241717 G T LRSAM1 Missense_Mutation p.R279L 0.45 deleterious(0) probably_damaging(0.937) TCGA-CR-7402-01 9 130506941 130506941 G T SH2D3C Silent p.R568R 0.25 TCGA-CR-7402-01 9 133946978 133946978 G A LAMC3 Silent p.R1059R 0.38 TCGA-CR-7402-01 9 134021593 134021593 C A NUP214 Missense_Mutation p.S616Y 0.42 possibly_damaging(0.781) TCGA-CR-7402-01 9 134350269 134350269 G T PRRC2B Missense_Mutation p.W918L 0.50 deleterious(0.01) possibly_damaging(0.83) TCGA-CR-7402-01 9 134394277 134394277 G A POMT1 Silent p.G495G 0.29 TCGA-CR-7402-01 9 136226863 136226863 T C SURF2 Silent p.P125P 0.26 TCGA-CR-7402-01 9 139353630 139353630 C G SEC16A Missense_Mutation p.A1789P 0.48 deleterious(0) probably_damaging(1) TCGA-CR-7402-01 9 16437135 16437135 G A BNC2 Missense_Mutation p.R353W 0.23 deleterious(0.01) probably_damaging(0.947) TCGA-CR-7402-01 9 18889647 18889647 G A ADAMTSL1 Missense_Mutation p.C1515Y 0.29 deleterious(0) probably_damaging(0.969) TCGA-CR-7402-01 9 26905641 26905641 A G PLAA Silent p.L752L 0.25 TCGA-CR-7402-01 9 33799064 33799064 C G PRSS3 Silent p.L267L 0.24 TCGA-CR-7402-01 9 33956140 33956140 G T UBAP2 Missense_Mutation p.S268Y 0.26 deleterious(0) probably_damaging(0.984) TCGA-CR-7402-01 9 35044685 35044686 - C C9orf131 Frame_Shift_Ins p.S689Qfs*13 0.17 TCGA-CR-7402-01 9 35061050 35061050 C A VCP Missense_Mutation p.V441F 0.23 deleterious(0.04) benign(0.182) TCGA-CR-7402-01 9 35557972 35557972 G T RUSC2 Silent p.R1015R 0.27 TCGA-CR-7402-01 9 35609311 35609311 C T TESK1 Nonsense_Mutation p.Q485* 0.26 TCGA-CR-7402-01 9 35809452 35809452 C A SPAG8 Nonsense_Mutation p.E441* 0.29 TCGA-CR-7402-01 9 35842414 35842414 A C TMEM8B 5'UTR 0.13 TCGA-CR-7402-01 9 36846845 36846845 A T PAX5 Missense_Mutation p.L365Q 0.27 deleterious(0) probably_damaging(0.995) TCGA-CR-7402-01 9 37531943 37531943 C G FBXO10 Missense_Mutation p.G511A 0.21 tolerated(0.12) probably_damaging(0.989) TCGA-CR-7402-01 9 37745967 37745967 C A FRMPD1 Missense_Mutation p.A1313D 0.26 tolerated(0.23) benign(0.014) TCGA-CR-7402-01 9 5757415 5757415 T C KIAA1432 Silent p.S652S 0.27 TCGA-CR-7402-01 9 6984211 6984211 G T KDM4C Missense_Mutation p.E387D 0.29 tolerated(0.24) benign(0.004) TCGA-CR-7402-01 9 71152371 71152371 T A TMEM252 Missense_Mutation p.E106V 0.28 deleterious(0) benign(0.079) TCGA-CR-7402-01 9 71835869 71835869 G A TJP2 Missense_Mutation p.D168N 0.23 tolerated(0.1) benign(0.255) TCGA-CR-7402-01 9 73240414 73240414 C A TRPM3 Intron 0.30 TCGA-CR-7402-01 9 77282809 77282809 T A RORB Missense_Mutation p.I368K 0.17 deleterious(0) probably_damaging(0.992) TCGA-CR-7402-01 9 79635323 79635323 G T FOXB2 Silent p.S251S 0.30 TCGA-CR-7402-01 9 8460478 8460478 C G PTPRD Missense_Mutation p.V1270L 0.26 deleterious(0) probably_damaging(0.959) TCGA-CR-7402-01 9 84606419 84606419 G T SPATA31D1 Missense_Mutation p.G345V 0.32 deleterious(0) possibly_damaging(0.853) TCGA-CR-7402-01 9 84608333 84608333 T C SPATA31D1 Missense_Mutation p.L983P 0.34 deleterious(0) probably_damaging(0.955) TCGA-CR-7402-01 9 84608809 84608809 G T SPATA31D1 Missense_Mutation p.G1142C 0.41 tolerated(0.07) probably_damaging(0.946) TCGA-CR-7402-01 9 95076834 95076834 T C NOL8 Missense_Mutation p.I691M 0.11 tolerated(0.18) benign(0.008) TCGA-CR-7402-01 9 95846964 95846964 C G SUSD3 Missense_Mutation p.P235A 0.26 tolerated_low_confidence(0.69) benign(0.007) TCGA-CR-7402-01 9 96025977 96025977 G T WNK2 Silent p.R1180R 0.40 TCGA-CR-7402-01 9 96859788 96859788 G T PTPDC1 Missense_Mutation p.A312S 0.62 tolerated(0.16) benign(0.157) TCGA-CR-7402-01 X 103267280 103267280 G A H2BFWT 3'UTR 0.63 TCGA-CR-7402-01 X 103495025 103495025 C A ESX1 Missense_Mutation p.G369W 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-CR-7402-01 X 111078301 111078301 G T TRPC5 Missense_Mutation p.L582I 0.63 tolerated(0.06) probably_damaging(0.988) TCGA-CR-7402-01 X 123805537 123805537 T A TENM1 Missense_Mutation p.K388N 0.59 tolerated(0.24) benign(0.313) TCGA-CR-7402-01 X 125686094 125686094 G T DCAF12L1 Silent p.T166T 0.71 TCGA-CR-7402-01 X 12906382 12906382 C G TLR7 Missense_Mutation p.P919A 0.55 tolerated(0.54) benign(0.026) TCGA-CR-7402-01 X 1317518 1317518 A G CRLF2 Missense_Mutation p.F183L 0.34 tolerated(0.09) possibly_damaging(0.739) TCGA-CR-7402-01 X 136112422 136112422 T A GPR101 Missense_Mutation p.K471M 0.66 deleterious(0.01) possibly_damaging(0.87) TCGA-CR-7402-01 X 138642993 138642993 G A F9 Missense_Mutation p.V273I 0.14 tolerated(0.48) benign(0) TCGA-CR-7402-01 X 140785676 140785676 G T SPANXD Silent p.L80L 0.43 TCGA-CR-7402-01 X 141291747 141291747 G A MAGEC2 Silent p.F9F 0.62 TCGA-CR-7402-01 X 148564745 148564745 C A IDS Missense_Mutation p.R184S 0.55 tolerated(0.4) benign(0.015) TCGA-CR-7402-01 X 150840977 150840977 T A PASD1 Missense_Mutation p.L587Q 0.67 deleterious(0.01) possibly_damaging(0.641) TCGA-CR-7402-01 X 151092986 151092986 T A MAGEA4 Missense_Mutation p.Y284N 0.60 deleterious(0.02) benign(0.065) TCGA-CR-7402-01 X 151896605 151896605 C T MAGEA12 3'Flank 0.57 TCGA-CR-7402-01 X 151936011 151936011 C A MAGEA3 Missense_Mutation p.E52D 0.39 tolerated(0.24) benign(0.317) TCGA-CR-7402-01 X 152915660 152915660 A C DUSP9 Missense_Mutation p.Q352P 0.52 tolerated(0.29) benign(0.001) TCGA-CR-7402-01 X 153132315 153132315 C - L1CAM Frame_Shift_Del p.W740* 0.35 TCGA-CR-7402-01 X 27766738 27766738 G T DCAF8L2 Missense_Mutation p.D576Y 0.55 deleterious(0) probably_damaging(0.955) TCGA-CR-7402-01 X 27839501 27839501 A T MAGEB10 Silent p.I26I 0.46 TCGA-CR-7402-01 X 29973704 29973704 C G IL1RAPL1 Missense_Mutation p.R620G 0.41 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CR-7402-01 X 30326348 30326348 T G NR0B1 Missense_Mutation p.Y378S 0.47 deleterious(0) probably_damaging(0.998) TCGA-CR-7402-01 X 31198490 31198493 AGTG TTT DMD Nonsense_Mutation p.C3360* 0.57 TCGA-CR-7402-01 X 49142667 49142667 G A PPP1R3F Silent p.A505A 0.80 TCGA-CR-7402-01 X 50052855 50052855 T A CCNB3 Silent p.S562S 0.47 TCGA-CR-7402-01 X 50053222 50053222 A C CCNB3 Missense_Mutation p.K685Q 0.50 tolerated(0.24) possibly_damaging(0.816) TCGA-CR-7402-01 X 54949662 54949662 A G TRO Missense_Mutation p.T233A 0.67 tolerated(0.19) unknown(0) TCGA-CR-7402-01 X 601734 601734 G T SHOX Missense_Mutation p.G182V 0.27 deleterious(0) possibly_damaging(0.516) TCGA-CR-7402-01 X 65835806 65835806 T G EDA2R Missense_Mutation p.Q19H 0.57 deleterious(0.03) probably_damaging(0.937) TCGA-CR-7402-01 X 79286337 79286337 T G TBX22 Missense_Mutation p.S430R 0.53 tolerated(0.38) benign(0.003) TCGA-CR-7402-01 Y 21869833 21869833 T A KDM5D Missense_Mutation p.D1129V 0.54 deleterious(0) possibly_damaging(0.838) TCGA-CR-7402-01 Y 23557115 23557115 G T RBMY2EP RNA 0.74 TCGA-CR-7402-01 Y 4924812 4924812 A T PCDH11Y 5'UTR 0.58 TCGA-CR-7402-01 Y 4967506 4967506 T A PCDH11Y Silent p.P629P 0.32 TCGA-CR-7402-01 Y 6114391 6114391 G T TSPY2 Missense_Mutation p.A28S 0.54 tolerated(0.23) benign(0.004) TCGA-CR-7402-01 Y 6736363 6736363 G T AMELY Silent p.V96V 0.55 TCGA-CR-7402-01 Y 6958154 6958154 C A TBL1Y Missense_Mutation p.Q491K 0.52 tolerated(0.58) benign(0.003) TCGA-CR-7404-01 10 103912186 103912186 C T NOLC1 Missense_Mutation p.R7C 0.13 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-CR-7404-01 10 1042133 1042133 G A GTPBP4 Missense_Mutation p.M137I 0.13 deleterious(0.01) benign(0.267) TCGA-CR-7404-01 10 23326419 23326419 G A ARMC3 3'UTR 0.19 TCGA-CR-7404-01 10 32582604 32582604 C T EPC1 Silent p.V125V 0.16 TCGA-CR-7404-01 10 37421251 37421251 G C ANKRD30A Silent p.A142A 0.07 TCGA-CR-7404-01 10 5995053 5995053 G A IL15RA 3'UTR 0.29 TCGA-CR-7404-01 10 71874076 71874076 G A AIFM2 Missense_Mutation p.T327M 0.22 tolerated(0.2) benign(0.042) TCGA-CR-7404-01 10 99025873 99025873 G C ARHGAP19 Missense_Mutation p.I22M 0.17 deleterious_low_confidence(0.01) benign(0.238) TCGA-CR-7404-01 11 45671147 45671147 G A CHST1 3'UTR 0.32 TCGA-CR-7404-01 11 4976057 4976057 T G OR51A2 Missense_Mutation p.K296T 0.07 deleterious(0) probably_damaging(0.938) TCGA-CR-7404-01 11 4976440 4976440 C G OR51A2 Missense_Mutation p.L168F 0.16 tolerated(0.34) probably_damaging(0.99) TCGA-CR-7404-01 11 557988 557988 C G C11orf35 Missense_Mutation p.E151Q 0.28 tolerated(1) benign(0.007) TCGA-CR-7404-01 11 558188 558188 C G C11orf35 Missense_Mutation p.L124F 0.19 deleterious(0) probably_damaging(0.997) TCGA-CR-7404-01 11 6340220 6340220 G A PRKCDBP 3'UTR 0.15 TCGA-CR-7404-01 11 6340678 6340678 G A PRKCDBP Silent p.D167D 0.09 TCGA-CR-7404-01 11 68822767 68822767 G A TPCN2 Missense_Mutation p.E126K 0.20 deleterious(0) possibly_damaging(0.453) TCGA-CR-7404-01 11 70331427 70331427 G A SHANK2 Silent p.L1658L 0.16 TCGA-CR-7404-01 11 71249246 71249246 A C KRTAP5-8 Missense_Mutation p.S49R 0.04 deleterious_low_confidence(0) unknown(0) TCGA-CR-7404-01 12 108686010 108686010 C T CMKLR1 Missense_Mutation p.V244M 0.09 deleterious(0.04) possibly_damaging(0.657) TCGA-CR-7404-01 12 117977627 117977627 C T KSR2 Silent p.T528T 0.23 TCGA-CR-7404-01 12 120638642 120638642 G A RPLP0 5'UTR 0.30 TCGA-CR-7404-01 12 124330339 124330339 C T DNAH10 Silent p.N1733N 0.07 TCGA-CR-7404-01 12 132626474 132626474 C T DDX51 Missense_Mutation p.D306N 0.11 deleterious(0.02) possibly_damaging(0.817) TCGA-CR-7404-01 12 15800065 15800065 C T EPS8 Missense_Mutation p.D522N 0.08 tolerated(0.78) benign(0.046) TCGA-CR-7404-01 12 20890094 20890094 G C SLCO1C1 Missense_Mutation p.R479T 0.10 tolerated(0.24) benign(0.247) TCGA-CR-7404-01 12 33532834 33532834 C T SYT10 Missense_Mutation p.R478Q 0.19 deleterious(0) benign(0.093) TCGA-CR-7404-01 12 50186313 50186313 G A NCKAP5L Silent p.F1236F 0.09 TCGA-CR-7404-01 13 110827073 110827073 G A COL4A1 Silent p.F1074F 0.08 TCGA-CR-7404-01 13 114290326 114290326 G A TFDP1 Missense_Mutation p.R241Q 0.10 tolerated(0.26) benign(0.075) TCGA-CR-7404-01 13 32757152 32757152 C G FRY Missense_Mutation p.A1012G 0.47 deleterious(0.04) probably_damaging(0.994) TCGA-CR-7404-01 13 38320194 38320194 C T TRPC4 Silent p.T259T 0.08 TCGA-CR-7404-01 14 52794009 52794009 C G PTGER2 Nonsense_Mutation p.S305* 0.22 TCGA-CR-7404-01 14 64691756 64691756 G A SYNE2 Missense_Mutation p.E6837K 0.20 benign(0.149) TCGA-CR-7404-01 14 75475950 75475950 G A EIF2B2 3'UTR 0.06 TCGA-CR-7404-01 14 81659171 81659171 G A GTF2A1 Missense_Mutation p.L209F 0.05 deleterious(0.01) benign(0.226) TCGA-CR-7404-01 14 90650623 90650623 G A KCNK13 Missense_Mutation p.R168Q 0.23 tolerated(0.28) benign(0.006) TCGA-CR-7404-01 14 93397717 93397717 G A CHGA Missense_Mutation p.E160K 0.17 tolerated(0.3) benign(0.346) TCGA-CR-7404-01 15 23811706 23811708 GTA - MKRN3 In_Frame_Del p.M259_Y260delinsI 0.10 TCGA-CR-7404-01 15 78465941 78465941 C G ACSBG1 Missense_Mutation p.E695Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CR-7404-01 15 85328024 85328024 C T ZNF592 Silent p.L706L 0.09 TCGA-CR-7404-01 16 1470057 1470057 G C C16orf91 Missense_Mutation p.P320A 0.28 deleterious_low_confidence(0) unknown(0) TCGA-CR-7404-01 16 1470388 1470388 G A C16orf91 Silent p.L243L 0.17 TCGA-CR-7404-01 16 19085308 19085308 C G COQ7 Silent p.V106V 0.12 TCGA-CR-7404-01 16 19505660 19505660 C T TMC5 Missense_Mutation p.S968L 0.15 tolerated(0.28) benign(0.002) TCGA-CR-7404-01 16 28843600 28843600 C T ATXN2L Missense_Mutation p.P466S 0.17 tolerated(0.11) probably_damaging(0.998) TCGA-CR-7404-01 16 30990939 30990939 G C SETD1A Missense_Mutation p.E1278Q 0.21 unknown(0) TCGA-CR-7404-01 16 49672148 49672148 G A ZNF423 Silent p.V305V 0.24 TCGA-CR-7404-01 16 85697133 85697133 G A GSE1 Missense_Mutation p.E853K 0.26 deleterious(0.01) probably_damaging(0.932) TCGA-CR-7404-01 17 18025472 18025472 C T MYO15A Missense_Mutation p.R1120C 0.20 unknown(0) TCGA-CR-7404-01 17 27286455 27286455 C T SEZ6 Missense_Mutation p.V603M 0.23 deleterious(0.01) possibly_damaging(0.903) TCGA-CR-7404-01 17 40458324 40458324 G A STAT5A Missense_Mutation p.M513I 0.15 tolerated(0.1) possibly_damaging(0.613) TCGA-CR-7404-01 17 41245102 41245102 G A BRCA1 Missense_Mutation p.H816Y 0.05 tolerated(0.14) benign(0.059) TCGA-CR-7404-01 17 56599054 56599054 C G SEPT4 Intron 0.05 TCGA-CR-7404-01 17 7163017 7163017 G A ELP5 3'UTR 0.11 TCGA-CR-7404-01 17 80363226 80363226 G A OGFOD3 Silent p.F173F 0.28 TCGA-CR-7404-01 17 8045157 8045157 C T PER1 Missense_Mutation p.R1189Q 0.14 tolerated(0.46) possibly_damaging(0.756) TCGA-CR-7404-01 17 80790043 80790044 AG - ZNF750 Frame_Shift_Del p.S96Cfs*125 0.21 TCGA-CR-7404-01 18 47765019 47765019 C T CCDC11 Missense_Mutation p.E424K 0.20 tolerated(0.14) benign(0.032) TCGA-CR-7404-01 18 8784808 8784808 G C SOGA2 Silent p.G566G 0.16 TCGA-CR-7404-01 19 22575483 22575483 T C ZNF98 Missense_Mutation p.K185R 0.18 deleterious(0.03) probably_damaging(0.995) TCGA-CR-7404-01 19 327204 327204 G T MIER2 Nonsense_Mutation p.S141* 0.05 TCGA-CR-7404-01 19 4359198 4359198 C T MPND Silent p.L425L 0.17 TCGA-CR-7404-01 19 45375325 45375325 G A PVRL2 Missense_Mutation p.D232N 0.07 tolerated(0.26) benign(0.174) TCGA-CR-7404-01 19 54313983 54313983 C A NLRP12 Missense_Mutation p.W310C 0.09 tolerated(0.13) benign(0.015) TCGA-CR-7404-01 19 57335885 57335885 G C PEG3 Missense_Mutation p.Q47E 0.21 deleterious(0) possibly_damaging(0.748) TCGA-CR-7404-01 19 57889020 57889020 C G ZNF547 Missense_Mutation p.H226D 0.05 tolerated(0.43) benign(0.004) TCGA-CR-7404-01 1 102290711 102290711 C G OLFM3 Missense_Mutation p.E155Q 0.19 tolerated(0.23) benign(0.398) TCGA-CR-7404-01 1 11775204 11775204 C G DRAXIN Silent p.L292L 0.21 TCGA-CR-7404-01 1 152279707 152279707 C T FLG Missense_Mutation p.G2552E 0.04 benign(0.426) TCGA-CR-7404-01 1 154018842 154018842 C T NUP210L Missense_Mutation p.E1163K 0.16 tolerated(0.39) possibly_damaging(0.507) TCGA-CR-7404-01 1 161495705 161495705 C T HSPA6 Silent p.N419N 0.10 TCGA-CR-7404-01 1 165877020 165877020 G A UCK2 Missense_Mutation p.R249H 0.21 tolerated(0.22) benign(0.002) TCGA-CR-7404-01 1 168037616 168037616 C T DCAF6 Silent p.L902L 0.15 TCGA-CR-7404-01 1 168511261 168511261 G C XCL2 Missense_Mutation p.T49S 0.11 tolerated(0.07) possibly_damaging(0.851) TCGA-CR-7404-01 1 168549385 168549385 C G XCL1 Missense_Mutation p.T49S 0.11 tolerated(0.08) probably_damaging(0.99) TCGA-CR-7404-01 1 179013306 179013306 G A FAM20B Silent p.L108L 0.13 TCGA-CR-7404-01 1 183529328 183529328 C G NCF2 Missense_Mutation p.K457N 0.04 tolerated(0.05) benign(0.347) TCGA-CR-7404-01 1 21268030 21268030 C T EIF4G3 Silent p.E489E 0.14 TCGA-CR-7404-01 1 246810955 246810955 G C CNST Silent p.L484L 0.15 TCGA-CR-7404-01 1 246810956 246810956 C T CNST Nonsense_Mutation p.Q485* 0.16 TCGA-CR-7404-01 1 247752501 247752501 C T OR2G2 Silent p.F280F 0.07 TCGA-CR-7404-01 1 247902051 247902051 C G OR14K1 Silent p.L45L 0.11 TCGA-CR-7404-01 1 33065913 33065925 AGATCCTATGTGG - ZBTB8A Frame_Shift_Del p.S408Lfs*2 0.12 TCGA-CR-7404-01 1 47282750 47282750 C G CYP4B1 Silent p.T368T 0.19 TCGA-CR-7404-01 1 47351200 47351200 C T CYP4Z2P RNA 0.13 TCGA-CR-7404-01 1 91817197 91817197 C T HFM1 Missense_Mutation p.D661N 0.20 deleterious(0) possibly_damaging(0.606) TCGA-CR-7404-01 20 3209061 3209061 G A SLC4A11 Missense_Mutation p.P844L 0.13 deleterious(0) possibly_damaging(0.493) TCGA-CR-7404-01 20 35783534 35783534 C G MROH8 Missense_Mutation p.E363Q 0.22 deleterious(0) possibly_damaging(0.878) TCGA-CR-7404-01 20 41100954 41100954 C T PTPRT Missense_Mutation p.E468K 0.25 deleterious(0) probably_damaging(0.954) TCGA-CR-7404-01 20 45000318 45000318 C G ELMO2 Missense_Mutation p.E531D 0.18 deleterious(0.04) benign(0.004) TCGA-CR-7404-01 20 468206 468206 G A CSNK2A1 Nonsense_Mutation p.R280* 0.07 TCGA-CR-7404-01 20 47274751 47274751 C T PREX1 Missense_Mutation p.E633K 0.06 tolerated(0.09) benign(0.061) TCGA-CR-7404-01 20 62839693 62839693 G C MYT1 Missense_Mutation p.E382Q 0.18 probably_damaging(0.943) TCGA-CR-7404-01 21 44450050 44450050 C T PKNOX1 Nonsense_Mutation p.Q384* 0.16 TCGA-CR-7404-01 22 28193511 28193511 C T MN1 Silent p.S1007S 0.24 TCGA-CR-7404-01 2 119750046 119750046 G A MARCO Missense_Mutation p.E416K 0.09 deleterious(0.01) unknown(0) TCGA-CR-7404-01 2 152521102 152521102 C T NEB Nonsense_Mutation p.W1788* 0.24 TCGA-CR-7404-01 2 162735688 162735688 G A SLC4A10 Silent p.S332S 0.14 TCGA-CR-7404-01 2 168106863 168106863 G C XIRP2 Silent p.L2987L 0.18 TCGA-CR-7404-01 2 173429352 173429352 C G PDK1 Missense_Mutation p.Q178E 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-CR-7404-01 2 179411092 179411092 G C TTN Missense_Mutation p.L31656V 0.15 TCGA-CR-7404-01 2 179411461 179411461 G C TTN Missense_Mutation p.S31565C 0.26 TCGA-CR-7404-01 2 179444648 179444648 G A TTN Intron 0.19 TCGA-CR-7404-01 2 179585815 179585815 C T TTN Missense_Mutation p.R7644Q 0.16 TCGA-CR-7404-01 2 228882641 228882641 G A SPHKAP Nonsense_Mutation p.R977* 0.28 TCGA-CR-7404-01 2 40655980 40655980 C G SLC8A1 Missense_Mutation p.D481H 0.06 deleterious(0) probably_damaging(1) TCGA-CR-7404-01 2 60688312 60688312 C T BCL11A Missense_Mutation p.E579K 0.19 tolerated(0.32) benign(0.177) TCGA-CR-7404-01 2 61644449 61644449 G A USP34 Intron 0.13 TCGA-CR-7404-01 2 79255340 79255340 C G REG3G Missense_Mutation p.L156V 0.17 tolerated(0.1) benign(0.08) TCGA-CR-7404-01 2 79349207 79349207 A T REG1A Missense_Mutation p.T93S 0.22 tolerated(0.31) possibly_damaging(0.745) TCGA-CR-7404-01 2 86398430 86398430 C T IMMT Missense_Mutation p.D154N 0.21 deleterious(0.04) possibly_damaging(0.735) TCGA-CR-7404-01 2 8934023 8934023 T C KIDINS220 Missense_Mutation p.Y398C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CR-7404-01 2 99779504 99779504 T C LIPT1 Missense_Mutation p.W362R 0.11 deleterious(0) possibly_damaging(0.859) TCGA-CR-7404-01 3 113798870 113798870 C A QTRTD1 Missense_Mutation p.F300L 0.14 deleterious(0.01) possibly_damaging(0.747) TCGA-CR-7404-01 3 131068603 131068603 C T NEK11 Missense_Mutation p.L641F 0.06 tolerated_low_confidence(0.15) benign(0.003) TCGA-CR-7404-01 3 141163374 141163374 C T ZBTB38 Missense_Mutation p.S715L 0.12 deleterious(0) probably_damaging(0.996) TCGA-CR-7404-01 3 171404477 171404477 G A PLD1 Missense_Mutation p.A622V 0.07 tolerated(0.32) benign(0) TCGA-CR-7404-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-CR-7404-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-CR-7404-01 3 193175211 193175211 G A ATP13A4 Missense_Mutation p.P573L 0.06 tolerated(0.07) benign(0.017) TCGA-CR-7404-01 3 195608990 195608990 C T TNK2 Silent p.L336L 0.11 TCGA-CR-7404-01 3 24018766 24018766 C T NR1D2 Silent p.L532L 0.12 TCGA-CR-7404-01 3 48641703 48641703 G C UQCRC1 Missense_Mutation p.L197V 0.05 deleterious(0) probably_damaging(0.999) TCGA-CR-7404-01 3 5215724 5215724 G C ARL8B Missense_Mutation p.R132T 0.09 tolerated(0.33) benign(0.253) TCGA-CR-7404-01 4 146824152 146824152 C T ZNF827 Missense_Mutation p.D87N 0.20 deleterious(0) benign(0.264) TCGA-CR-7404-01 4 74274401 74274401 G C ALB Missense_Mutation p.E121Q 0.13 deleterious(0.01) possibly_damaging(0.609) TCGA-CR-7404-01 4 90171030 90171030 T C GPRIN3 Missense_Mutation p.M78V 0.28 deleterious(0.01) possibly_damaging(0.782) TCGA-CR-7404-01 5 140855927 140855927 G C PCDHGC3 Missense_Mutation p.E82Q 0.05 tolerated(0.11) benign(0.309) TCGA-CR-7404-01 5 37064919 37064929 TGCTAATAAGC - NIPBL Frame_Shift_Del p.A2781Dfs*2 0.21 TCGA-CR-7404-01 5 40798216 40798216 G T PRKAA1 Missense_Mutation p.H26N 0.13 tolerated(0.59) benign(0.272) TCGA-CR-7404-01 6 112510392 112510392 C T LAMA4 Missense_Mutation p.G245E 0.14 tolerated(0.09) probably_damaging(0.945) TCGA-CR-7404-01 6 128222101 128222101 G A THEMIS 5'UTR 0.19 TCGA-CR-7404-01 6 26431526 26431526 G C BTN2A3P RNA 0.09 TCGA-CR-7404-01 6 31646945 31646945 G A LY6G5C Silent p.C74C 0.21 TCGA-CR-7404-01 6 31655463 31655463 C T ABHD16A Missense_Mutation p.R501H 0.17 tolerated(0.12) benign(0.288) TCGA-CR-7404-01 6 32016196 32016196 A T TNXB 5'Flank 0.15 TCGA-CR-7404-01 6 32017777 32017777 G A TNXB 5'Flank 0.08 TCGA-CR-7404-01 7 100279283 100279283 C T GIGYF1 3'UTR 0.22 TCGA-CR-7404-01 7 100551440 100551440 C G MUC3A Missense_Mutation p.S64C 0.15 deleterious(0.01) possibly_damaging(0.448) TCGA-CR-7404-01 7 142569516 142569516 G A TRPV6 Missense_Mutation p.R708C 0.11 tolerated_low_confidence(0.06) benign(0.003) TCGA-CR-7404-01 7 27135348 27135348 C T HOXA1 Missense_Mutation p.G62S 0.18 tolerated(0.43) benign(0) TCGA-CR-7404-01 7 28220185 28220185 G A JAZF1 Silent p.I4I 0.12 TCGA-CR-7404-01 7 43519316 43519316 G A HECW1 Silent p.Q1069Q 0.05 TCGA-CR-7404-01 7 88423630 88423630 G C C7orf62 Silent p.L209L 0.15 TCGA-CR-7404-01 8 116426463 116426463 C T TRPS1 Missense_Mutation p.E1225K 0.15 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CR-7404-01 8 61764696 61764696 G A CHD7 Silent p.Q1928Q 0.14 TCGA-CR-7404-01 8 65291792 65291792 C T MIR124-2 RNA 0.11 TCGA-CR-7404-01 8 82670413 82670413 G A CHMP4C Missense_Mutation p.E174K 0.07 deleterious(0.01) probably_damaging(0.973) TCGA-CR-7404-01 9 15214144 15214144 G A TTC39B Missense_Mutation p.R159C 0.30 deleterious(0) probably_damaging(0.932) TCGA-CR-7404-01 9 80856706 80856706 G A CEP78 Silent p.K198K 0.24 TCGA-CR-7404-01 X 102471381 102471381 G A BEX4 Silent p.R100R 0.09 TCGA-CR-7404-01 X 108691319 108691319 G C GUCY2F Missense_Mutation p.I516M 0.35 deleterious(0) probably_damaging(0.994) TCGA-CR-7404-01 X 118370416 118370416 C T PGRMC1 Silent p.L30L 0.73 TCGA-CR-7404-01 X 13645320 13645320 G A EGFL6 Silent p.E493E 0.09 TCGA-CR-7404-01 X 139038791 139038791 T A CXorf66 Missense_Mutation p.D117V 0.15 deleterious(0) probably_damaging(0.972) TCGA-CR-7404-01 X 139038792 139038792 C A CXorf66 Missense_Mutation p.D117Y 0.14 deleterious(0) probably_damaging(0.979) TCGA-CR-7404-01 X 142716823 142716823 C A SLITRK4 Missense_Mutation p.G701V 0.24 tolerated(0.32) probably_damaging(0.999) TCGA-CR-7404-01 X 153043515 153043515 G A PLXNB3 Missense_Mutation p.D1815N 0.41 deleterious(0) probably_damaging(1) TCGA-CR-7404-01 X 44108119 44108119 C T EFHC2 Missense_Mutation p.R301Q 0.10 tolerated(0.11) benign(0.187) TCGA-CR-7404-01 X 99657583 99657583 G C PCDH19 Missense_Mutation p.S852C 0.25 deleterious(0.02) benign(0.443) TCGA-CV-5430-01 10 118306919 118306919 C T PNLIP Missense_Mutation p.R54C 0.69 deleterious(0) possibly_damaging(0.554) TCGA-CV-5430-01 10 118434882 118434882 G C HSPA12A Missense_Mutation p.L480V 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-CV-5430-01 10 125526664 125526664 G A CPXM2 Missense_Mutation p.S435L 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-CV-5430-01 10 127429569 127429569 G C EDRF1 Splice_Site p.X724_splice 0.22 TCGA-CV-5430-01 10 18439891 18439891 G A CACNB2 Missense_Mutation p.S67N 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-CV-5430-01 10 50532323 50532323 C T C10orf71 Missense_Mutation p.A578V 0.61 tolerated(0.11) benign(0.034) TCGA-CV-5430-01 10 5498902 5498902 G A NET1 Missense_Mutation p.R579Q 0.19 tolerated_low_confidence(0.06) benign(0.023) TCGA-CV-5430-01 10 70652497 70652497 C G STOX1 3'UTR 0.17 TCGA-CV-5430-01 10 84745450 84745451 AG - NRG3 3'Flank 0.41 TCGA-CV-5430-01 10 90682924 90682924 G C STAMBPL1 Splice_Site p.X419_splice 0.23 TCGA-CV-5430-01 11 1213506 1213506 C A MUC5AC RNA 0.06 TCGA-CV-5430-01 11 123989062 123989062 A G VWA5A Missense_Mutation p.D138G 0.14 deleterious(0) probably_damaging(0.992) TCGA-CV-5430-01 11 22363086 22363086 G A SLC17A6 Silent p.K33K 0.19 TCGA-CV-5430-01 11 57268800 57268800 C T SLC43A1 Missense_Mutation p.E53K 0.12 tolerated(0.2) benign(0.002) TCGA-CV-5430-01 11 67208498 67208498 G A CORO1B Intron 0.19 TCGA-CV-5430-01 12 121426777 121426777 G A HNF1A Silent p.T156T 0.33 TCGA-CV-5430-01 12 46245941 46245941 C A ARID2 Missense_Mutation p.D1345E 0.22 tolerated_low_confidence(0.62) benign(0.004) TCGA-CV-5430-01 12 50135944 50135944 G C TMBIM6 Missense_Mutation p.E9Q 0.71 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-CV-5430-01 12 53663848 53663848 G A ESPL1 Silent p.L374L 0.63 TCGA-CV-5430-01 12 54448755 54448755 C A HOXC4 Silent p.I187I 0.65 TCGA-CV-5430-01 12 6559821 6559821 C A CD27 Intron 0.18 TCGA-CV-5430-01 12 9095069 9095069 T C M6PR Silent p.K218K 0.15 TCGA-CV-5430-01 13 32913203 32913203 G A BRCA2 Missense_Mutation p.E1571K 0.59 tolerated(0.14) benign(0.073) TCGA-CV-5430-01 13 43643083 43643083 A T DNAJC15 Missense_Mutation p.I60F 0.37 tolerated(0.7) benign(0.01) TCGA-CV-5430-01 14 22315378 22315378 G T TRAV8-2 Missense_Mutation p.A106S 0.42 deleterious(0) probably_damaging(0.994) TCGA-CV-5430-01 14 24532038 24532038 G A LRRC16B Missense_Mutation p.E897K 0.08 tolerated(0.06) benign(0.31) TCGA-CV-5430-01 14 24789048 24789048 G C ADCY4 Nonsense_Mutation p.S878* 0.08 TCGA-CV-5430-01 14 45679696 45679696 A T MIS18BP1 Missense_Mutation p.D1013E 0.12 tolerated(0.27) probably_damaging(0.981) TCGA-CV-5430-01 14 67746331 67746331 G C MPP5 Intron 0.47 TCGA-CV-5430-01 14 72169178 72169178 C T SIPA1L1 Missense_Mutation p.T1201M 0.20 deleterious(0.01) possibly_damaging(0.877) TCGA-CV-5430-01 15 26806279 26806279 G A GABRB3 Missense_Mutation p.R294W 0.20 deleterious(0) probably_damaging(1) TCGA-CV-5430-01 15 40057834 40057834 G C FSIP1 Missense_Mutation p.Q142E 0.23 deleterious(0) possibly_damaging(0.716) TCGA-CV-5430-01 15 40750963 40750963 C G BAHD1 Silent p.P100P 0.09 TCGA-CV-5430-01 15 48054394 48054394 C T SEMA6D Intron 0.32 TCGA-CV-5430-01 15 89392924 89392924 C A ACAN Missense_Mutation p.P663Q 0.14 deleterious(0.01) unknown(0) TCGA-CV-5430-01 16 2053657 2053657 C T ZNF598 Missense_Mutation p.D99N 0.24 possibly_damaging(0.834) TCGA-CV-5430-01 16 20781560 20781560 G A ACSM3 Nonsense_Mutation p.W68* 0.09 TCGA-CV-5430-01 16 30364880 30364880 G A CD2BP2 Missense_Mutation p.A206V 0.11 tolerated(0.13) possibly_damaging(0.571) TCGA-CV-5430-01 16 30621254 30621254 A G ZNF689 Missense_Mutation p.Y37H 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-5430-01 16 4934903 4934903 G C PPL Silent p.L1251L 0.20 TCGA-CV-5430-01 16 615181 615181 C G C16orf11 Silent p.L530L 0.41 TCGA-CV-5430-01 16 69744855 69744855 G C NQO1 3'UTR 0.24 TCGA-CV-5430-01 16 825511 825511 G C MSLNL Missense_Mutation p.S417C 0.27 benign(0.086) TCGA-CV-5430-01 16 87744911 87744911 G A KLHDC4 Missense_Mutation p.S325L 0.21 deleterious(0.03) benign(0.109) TCGA-CV-5430-01 16 89603249 89603249 C G SPG7 Intron 0.18 TCGA-CV-5430-01 17 10545560 10545560 G A MYH3 Silent p.F652F 0.21 TCGA-CV-5430-01 17 28659169 28659169 C T TMIGD1 5'UTR 0.24 TCGA-CV-5430-01 17 3301357 3301357 C T OR1E1 Silent p.V116V 0.33 TCGA-CV-5430-01 17 3629572 3629572 G A GSG2 Missense_Mutation p.M781I 0.23 tolerated(0.37) benign(0.018) TCGA-CV-5430-01 17 3961378 3961378 T C ZZEF1 Missense_Mutation p.N1692S 0.31 tolerated(1) benign(0) TCGA-CV-5430-01 17 41347008 41347008 A G NBR1 Missense_Mutation p.I568V 0.22 deleterious(0) probably_damaging(0.995) TCGA-CV-5430-01 17 41888554 41888554 C G MPP3 Missense_Mutation p.K425N 0.20 deleterious(0) possibly_damaging(0.765) TCGA-CV-5430-01 17 48145541 48145541 C G ITGA3 Missense_Mutation p.T179S 0.08 tolerated(0.18) possibly_damaging(0.46) TCGA-CV-5430-01 17 5486123 5486123 C T NLRP1 Silent p.L105L 0.08 TCGA-CV-5430-01 17 72915717 72915717 G A USH1G Missense_Mutation p.A405V 0.06 tolerated(0.5) benign(0.001) TCGA-CV-5430-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.33 deleterious(0) probably_damaging(0.997) TCGA-CV-5430-01 17 7579410 7579420 GGGGCCAGGAG - TP53 Frame_Shift_Del p.S90Vfs*55 0.39 TCGA-CV-5430-01 17 76045225 76045225 G A TNRC6C Missense_Mutation p.V28I 0.15 tolerated(0.2) benign(0.016) TCGA-CV-5430-01 17 7667311 7667311 C G DNAH2 Silent p.L1047L 0.12 TCGA-CV-5430-01 18 29847915 29847915 G C GAREM Missense_Mutation p.I850M 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-5430-01 18 56184167 56184167 G T ALPK2 Silent p.I1971I 0.19 TCGA-CV-5430-01 18 58038766 58038766 G A MC4R Nonsense_Mutation p.Q273* 0.19 TCGA-CV-5430-01 19 10426650 10426650 C T FDX1L Missense_Mutation p.G8E 0.19 tolerated_low_confidence(0.07) benign(0.221) TCGA-CV-5430-01 19 11224240 11224240 C G LDLR Missense_Mutation p.S463C 0.24 deleterious(0) probably_damaging(0.934) TCGA-CV-5430-01 19 2096977 2096977 G T IZUMO4 Silent p.T11T 0.14 TCGA-CV-5430-01 19 22157311 22157311 A C ZNF208 Missense_Mutation p.C175W 0.16 deleterious(0) probably_damaging(0.986) TCGA-CV-5430-01 19 22836175 22836175 G A ZNF492 5'UTR 0.20 TCGA-CV-5430-01 19 23836955 23836955 T C ZNF675 Silent p.E260E 0.24 TCGA-CV-5430-01 19 4171169 4171169 C T CREB3L3 Silent p.V324V 0.48 TCGA-CV-5430-01 19 44501449 44501450 - A ZNF155 Frame_Shift_Ins p.P494Tfs*5 0.18 TCGA-CV-5430-01 19 45316587 45316587 C G BCAM Silent p.P195P 0.31 TCGA-CV-5430-01 19 49245052 49245052 C T IZUMO1 Missense_Mutation p.V250I 0.25 deleterious(0.01) probably_damaging(1) TCGA-CV-5430-01 19 50399101 50399101 C T IL4I1 Missense_Mutation p.A97T 0.10 deleterious(0.03) possibly_damaging(0.831) TCGA-CV-5430-01 19 52619847 52619847 A G ZNF616 Silent p.C190C 0.33 TCGA-CV-5430-01 19 55046878 55046878 C A KIR3DX1 Silent p.R141R 0.52 TCGA-CV-5430-01 1 109554140 109554140 G T WDR47 Silent p.I183I 0.28 TCGA-CV-5430-01 1 117087209 117087209 A - CD58 Frame_Shift_Del p.S30Pfs*12 0.41 TCGA-CV-5430-01 1 154067493 154067493 C G NUP210L Missense_Mutation p.G702A 0.22 tolerated(0.5) benign(0.017) TCGA-CV-5430-01 1 154171936 154171936 C G C1orf189 Missense_Mutation p.Q91H 0.15 tolerated(0.28) possibly_damaging(0.73) TCGA-CV-5430-01 1 156884446 156884446 C T PEAR1 Silent p.D990D 0.24 TCGA-CV-5430-01 1 157666929 157666929 C G FCRL3 Splice_Site p.X282_splice 0.41 TCGA-CV-5430-01 1 161039422 161039422 G T ARHGAP30 5'UTR 0.15 TCGA-CV-5430-01 1 161599568 161599568 C T FCGR3B Missense_Mutation p.G143S 0.11 tolerated(0.14) benign(0.222) TCGA-CV-5430-01 1 167757121 167757121 C T MPZL1 Missense_Mutation p.S258L 0.44 deleterious(0.01) benign(0.077) TCGA-CV-5430-01 1 171509614 171509614 A G PRRC2C Silent p.R1001R 0.26 TCGA-CV-5430-01 1 174977767 174977767 T C CACYBP Missense_Mutation p.I152T 0.60 deleterious(0.04) benign(0.204) TCGA-CV-5430-01 1 176668354 176668354 G T PAPPA2 Silent p.L955L 0.16 TCGA-CV-5430-01 1 176769219 176769219 G A PAPPA2 Missense_Mutation p.R1718H 0.24 deleterious(0.01) possibly_damaging(0.833) TCGA-CV-5430-01 1 180165521 180165521 C G QSOX1 Silent p.L531L 0.30 TCGA-CV-5430-01 1 197071233 197071233 C G ASPM Missense_Mutation p.R2383T 0.19 tolerated(0.11) benign(0.009) TCGA-CV-5430-01 1 214542824 214542824 G C PTPN14 Missense_Mutation p.P1083A 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-5430-01 1 215848775 215848775 C T USH2A Missense_Mutation p.A4160T 0.22 benign(0.098) TCGA-CV-5430-01 1 22150306 22150306 G T LDLRAD2 3'UTR 0.36 TCGA-CV-5430-01 1 228509058 228509058 C A OBSCN Missense_Mutation p.A5796E 0.23 benign(0.027) TCGA-CV-5430-01 1 37337827 37337827 C T GRIK3 Missense_Mutation p.D232N 0.15 deleterious(0) probably_damaging(1) TCGA-CV-5430-01 1 39797559 39797559 G A MACF1 Intron 0.22 TCGA-CV-5430-01 1 47882290 47882290 C T FOXE3 Silent p.I101I 0.29 TCGA-CV-5430-01 1 95448614 95448614 G A ALG14 3'UTR 0.34 TCGA-CV-5430-01 20 13753183 13753183 C T ESF1 Missense_Mutation p.E410K 0.02 tolerated(0.09) benign(0.019) TCGA-CV-5430-01 20 25199204 25199204 G A ENTPD6 Silent p.L299L 0.44 TCGA-CV-5430-01 20 2621930 2621930 A G TMC2 Missense_Mutation p.H885R 0.06 tolerated(0.45) benign(0) TCGA-CV-5430-01 20 60511842 60511842 C T CDH4 Silent p.S864S 0.50 TCGA-CV-5430-01 21 30357237 30357237 C T LTN1 Missense_Mutation p.D164N 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-5430-01 22 29695245 29695245 C T EWSR1 Silent p.F539F 0.21 TCGA-CV-5430-01 22 30722697 30722697 G A TBC1D10A Silent p.F58F 0.29 TCGA-CV-5430-01 22 42908346 42908346 C T RRP7A 3'UTR 0.26 TCGA-CV-5430-01 2 105977793 105977794 - G FHL2 Frame_Shift_Ins p.F263Lfs*28 0.22 TCGA-CV-5430-01 2 120712858 120712858 G T PTPN4 Missense_Mutation p.A647S 0.22 tolerated(0.36) benign(0) TCGA-CV-5430-01 2 152226720 152226720 A C TNFAIP6 Missense_Mutation p.E194A 0.16 deleterious(0.03) probably_damaging(0.924) TCGA-CV-5430-01 2 159488376 159488376 G T PKP4 Missense_Mutation p.S422I 0.25 deleterious(0) possibly_damaging(0.726) TCGA-CV-5430-01 2 174819640 174819640 T C SP3 Missense_Mutation p.I534V 0.36 tolerated(0.18) benign(0.192) TCGA-CV-5430-01 2 175006625 175006625 C T OLA1 Missense_Mutation p.M159I 0.16 tolerated(0.21) benign(0.001) TCGA-CV-5430-01 2 178482633 178482633 T A TTC30A Missense_Mutation p.N266I 0.34 deleterious(0) probably_damaging(0.987) TCGA-CV-5430-01 2 179449963 179449963 C T TTN Missense_Mutation p.G21503E 0.14 TCGA-CV-5430-01 2 201798698 201798698 C T ORC2 Splice_Site p.X237_splice 0.16 TCGA-CV-5430-01 2 237233322 237233322 C T IQCA1 3'UTR 0.33 TCGA-CV-5430-01 2 27566417 27566417 T A GTF3C2 Missense_Mutation p.D2V 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-5430-01 2 33588552 33588552 A C LTBP1 Missense_Mutation p.T1456P 0.12 tolerated(0.2) probably_damaging(0.947) TCGA-CV-5430-01 2 54155437 54155437 T C PSME4 Silent p.T440T 0.11 TCGA-CV-5430-01 2 9666273 9666273 G A ADAM17 Silent p.G240G 0.37 TCGA-CV-5430-01 2 97490833 97490833 G A CNNM3 Missense_Mutation p.E422K 0.14 deleterious(0) possibly_damaging(0.786) TCGA-CV-5430-01 3 101573934 101573934 A G NFKBIZ Missense_Mutation p.N491S 0.18 deleterious(0.02) probably_damaging(0.991) TCGA-CV-5430-01 3 111296359 111296359 G C CD96 Missense_Mutation p.S185T 0.16 tolerated_low_confidence(0.52) benign(0.01) TCGA-CV-5430-01 3 130715584 130715584 C G ATP2C1 Silent p.L763L 0.28 TCGA-CV-5430-01 3 132435736 132435736 C T NPHP3 Missense_Mutation p.E230K 0.15 deleterious(0.04) benign(0.169) TCGA-CV-5430-01 3 134323141 134323141 G A KY Silent p.S422S 0.11 TCGA-CV-5430-01 3 183894784 183894784 G C AP2M1 Translation_Start_Site p.M1? 0.13 deleterious(0) probably_damaging(0.996) TCGA-CV-5430-01 3 53834348 53834348 G T CACNA1D Nonsense_Mutation p.E1686* 0.29 TCGA-CV-5430-01 3 57542169 57542169 G A PDE12 Silent p.L21L 0.42 TCGA-CV-5430-01 4 17488749 17488749 G A QDPR 3'UTR 0.17 TCGA-CV-5430-01 4 187538164 187538164 C A FAT1 Nonsense_Mutation p.E3024* 0.37 TCGA-CV-5430-01 4 74846999 74846999 C T PF4 Silent p.L76L 0.09 TCGA-CV-5430-01 4 959312 959312 C T DGKQ Missense_Mutation p.V529M 0.10 deleterious(0.05) benign(0.017) TCGA-CV-5430-01 4 9828063 9828063 G A SLC2A9 Silent p.I527I 0.34 TCGA-CV-5430-01 5 102894586 102894586 C G NUDT12 Missense_Mutation p.E264Q 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-CV-5430-01 5 112176368 112176368 G A APC Missense_Mutation p.E1693K 0.18 probably_damaging(0.995) TCGA-CV-5430-01 5 112177885 112177885 G C APC Missense_Mutation p.L2198F 0.24 benign(0.394) TCGA-CV-5430-01 5 112178407 112178407 G T APC Missense_Mutation p.Q2372H 0.27 benign(0.044) TCGA-CV-5430-01 5 112178579 112178579 G C APC Missense_Mutation p.D2430H 0.35 probably_damaging(1) TCGA-CV-5430-01 5 140572793 140572793 C G PCDHB10 Missense_Mutation p.S223C 0.27 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-CV-5430-01 5 153085627 153085627 G A GRIA1 Missense_Mutation p.R618K 0.60 deleterious(0) probably_damaging(0.959) TCGA-CV-5430-01 5 167887709 167887709 C T WWC1 Nonsense_Mutation p.R960* 0.57 TCGA-CV-5430-01 5 169144446 169144446 A G DOCK2 Missense_Mutation p.E697G 0.05 deleterious(0) probably_damaging(0.971) TCGA-CV-5430-01 6 108984767 108984767 G C FOXO3 Missense_Mutation p.G244A 0.29 deleterious(0) probably_damaging(0.937) TCGA-CV-5430-01 6 117681060 117681060 A G ROS1 Missense_Mutation p.V1187A 0.12 tolerated(0.1) benign(0.063) TCGA-CV-5430-01 6 12122650 12122650 C G HIVEP1 Missense_Mutation p.F874L 0.15 tolerated(1) benign(0.006) TCGA-CV-5430-01 6 134498960 134498960 T C SGK1 Intron 0.26 TCGA-CV-5430-01 6 146126707 146126708 - A FBXO30 Frame_Shift_Ins p.D279* 0.19 TCGA-CV-5430-01 6 151936765 151936765 T C CCDC170 Missense_Mutation p.M633T 0.46 tolerated(0.14) benign(0.005) TCGA-CV-5430-01 6 26158508 26158508 C G HIST1H2BD Missense_Mutation p.S37R 0.09 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-CV-5430-01 6 27100532 27100532 C T HIST1H2BJ 5'Flank 0.15 TCGA-CV-5430-01 6 3105891 3105891 G C RIPK1 Missense_Mutation p.Q394H 0.28 tolerated(0.15) benign(0.011) TCGA-CV-5430-01 6 42036204 42036204 G A TAF8 Silent p.L213L 0.12 TCGA-CV-5430-01 6 43413457 43413457 G T ABCC10 Missense_Mutation p.A1051S 0.12 tolerated(0.05) possibly_damaging(0.486) TCGA-CV-5430-01 6 87726086 87726086 C A HTR1E Missense_Mutation p.T345K 0.22 deleterious(0) probably_damaging(1) TCGA-CV-5430-01 6 94120310 94120310 C T EPHA7 Silent p.R247R 0.19 TCGA-CV-5430-01 7 140501295 140501295 G C BRAF Missense_Mutation p.F259L 0.11 deleterious(0) benign(0.208) TCGA-CV-5430-01 7 150709614 150709614 G C ATG9B 3'UTR 0.12 TCGA-CV-5430-01 7 150935153 150935153 G C CHPF2 Missense_Mutation p.E569Q 0.14 tolerated(0.12) possibly_damaging(0.593) TCGA-CV-5430-01 7 2946206 2946206 C G CARD11 3'UTR 0.13 TCGA-CV-5430-01 7 30818091 30818091 G A FAM188B Missense_Mutation p.R36H 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-5430-01 7 47882701 47882701 G T PKD1L1 Silent p.V1768V 0.29 TCGA-CV-5430-01 7 83610760 83610760 G A SEMA3A Missense_Mutation p.A510V 0.17 tolerated(0.27) benign(0.025) TCGA-CV-5430-01 7 90895581 90895581 C T FZD1 Silent p.I462I 0.24 TCGA-CV-5430-01 7 91632007 91632007 G C AKAP9 Missense_Mutation p.E926Q 0.16 probably_damaging(0.999) TCGA-CV-5430-01 7 92147568 92147568 T C PEX1 Missense_Mutation p.E120G 0.40 deleterious(0) probably_damaging(1) TCGA-CV-5430-01 7 93112150 93112150 C G CALCR Intron 0.05 TCGA-CV-5430-01 7 94257653 94257653 G A SGCE Missense_Mutation p.P84L 0.34 tolerated(0.06) benign(0.276) TCGA-CV-5430-01 8 100479733 100479733 G - VPS13B Frame_Shift_Del p.G1180Vfs*6 0.19 TCGA-CV-5430-01 8 110984685 110984685 G A KCNV1 Missense_Mutation p.R265W 0.44 deleterious(0.02) benign(0.013) TCGA-CV-5430-01 8 141874416 141874416 G A PTK2 Nonsense_Mutation p.Q149* 0.08 TCGA-CV-5430-01 8 19315939 19315939 G A CSGALNACT1 Silent p.F283F 0.24 TCGA-CV-5430-01 8 21973860 21973860 G A HR Missense_Mutation p.H1154Y 0.46 tolerated(0.05) benign(0.023) TCGA-CV-5430-01 8 24813613 24813613 G C CTD-2168K21.2 5'Flank 0.27 TCGA-CV-5430-01 8 42012170 42012170 G C AP3M2 5'UTR 0.06 TCGA-CV-5430-01 8 56699563 56699563 G A TGS1 Missense_Mutation p.G369E 0.08 deleterious(0.03) benign(0.015) TCGA-CV-5430-01 8 77616773 77616773 G C ZFHX4 Missense_Mutation p.Q150H 0.53 benign(0.387) TCGA-CV-5430-01 8 91643854 91643854 C T TMEM64 Missense_Mutation p.G293S 0.67 deleterious(0) probably_damaging(1) TCGA-CV-5430-01 9 109688481 109688481 G C ZNF462 Missense_Mutation p.R763T 0.18 benign(0.197) TCGA-CV-5430-01 9 111945031 111945031 A - EPB41L4B Frame_Shift_Del p.F822Sfs*26 0.36 TCGA-CV-5430-01 9 116136274 116136274 G A HDHD3 Silent p.L121L 0.21 TCGA-CV-5430-01 9 117666585 117666585 T C TNFSF8 Missense_Mutation p.T111A 0.51 tolerated(0.06) benign(0.004) TCGA-CV-5430-01 9 125909210 125909210 G T STRBP Missense_Mutation p.S421Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-CV-5430-01 9 131669481 131669481 C T LRRC8A Missense_Mutation p.T13M 0.30 tolerated(0.13) possibly_damaging(0.873) TCGA-CV-5430-01 9 5763345 5763345 A G KIAA1432 Missense_Mutation p.H773R 0.37 tolerated(0.24) possibly_damaging(0.492) TCGA-CV-5430-01 9 5763371 5763371 C A KIAA1432 Missense_Mutation p.L782M 0.36 deleterious(0) probably_damaging(1) TCGA-CV-5430-01 X 100547854 100547854 G A TAF7L Silent p.D60D 0.04 TCGA-CV-5430-01 X 123870838 123870838 C G TENM1 Missense_Mutation p.V249L 0.64 tolerated_low_confidence(0.47) benign(0.035) TCGA-CV-5430-01 X 148798058 148798058 T C MAGEA11 Silent p.C304C 0.18 TCGA-CV-5430-01 X 18912411 18912411 G A PHKA2 Missense_Mutation p.L1150F 0.70 deleterious(0) benign(0.045) TCGA-CV-5432-01 10 103360557 103360557 G C DPCD Missense_Mutation p.D70H 0.32 deleterious(0) benign(0.026) TCGA-CV-5432-01 10 105174888 105174888 G T PDCD11 Missense_Mutation p.G500W 0.31 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 10 118215284 118215284 G C PNLIPRP3 Missense_Mutation p.L169F 0.08 deleterious(0) probably_damaging(0.99) TCGA-CV-5432-01 10 118351331 118351331 C A PNLIPRP1 Missense_Mutation p.P33H 0.24 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 10 118396416 118396416 A G PNLIPRP2 Missense_Mutation p.N353D 0.20 tolerated(0.52) benign(0.007) TCGA-CV-5432-01 10 125447567 125447567 G T GPR26 Missense_Mutation p.R302L 0.35 deleterious(0) possibly_damaging(0.809) TCGA-CV-5432-01 10 134563023 134563023 G A INPP5A Silent p.T245T 0.28 TCGA-CV-5432-01 10 15649744 15649744 G T ITGA8 Missense_Mutation p.R566S 0.65 tolerated(0.37) benign(0.169) TCGA-CV-5432-01 10 15700997 15700997 C T ITGA8 Splice_Site p.X316_splice 0.54 TCGA-CV-5432-01 10 60562844 60562844 G A BICC1 Missense_Mutation p.D675N 0.39 tolerated(0.2) benign(0.388) TCGA-CV-5432-01 10 72468365 72468365 C G ADAMTS14 Missense_Mutation p.P234R 0.23 deleterious(0.04) probably_damaging(0.91) TCGA-CV-5432-01 10 73044575 73044575 T G UNC5B Missense_Mutation p.S135A 0.29 tolerated(0.12) benign(0.147) TCGA-CV-5432-01 10 79764513 79764513 C T POLR3A Silent p.L736L 0.26 TCGA-CV-5432-01 11 108381350 108381350 G A EXPH5 Silent p.G1628G 0.61 TCGA-CV-5432-01 11 123777713 123777713 C T OR8D4 Missense_Mutation p.T192I 0.08 tolerated(0.06) possibly_damaging(0.724) TCGA-CV-5432-01 11 124121234 124121234 G A OR8G1 Intron 0.46 TCGA-CV-5432-01 11 128332245 128332245 C T ETS1 3'UTR 0.36 TCGA-CV-5432-01 11 48181590 48181590 A T PTPRJ Missense_Mutation p.T1183S 0.63 tolerated(0.08) benign(0.156) TCGA-CV-5432-01 11 55340052 55340052 C A OR4C16 Missense_Mutation p.S150Y 0.26 deleterious(0) probably_damaging(0.988) TCGA-CV-5432-01 11 55890010 55890010 C A OR8H3 Silent p.L54L 0.17 TCGA-CV-5432-01 11 56000380 56000380 G A OR5T2 Silent p.L94L 0.06 TCGA-CV-5432-01 11 56000428 56000428 G A OR5T2 Silent p.L78L 0.11 TCGA-CV-5432-01 11 56086376 56086376 A T OR8K3 Silent p.I198I 0.24 TCGA-CV-5432-01 11 56344727 56344727 G A OR5M10 Silent p.L157L 0.23 TCGA-CV-5432-01 11 5730527 5730527 G A TRIM22 Silent p.K382K 0.21 TCGA-CV-5432-01 11 58275518 58275518 G A OR5B21 Missense_Mutation p.L21F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.933) TCGA-CV-5432-01 11 58949291 58949291 C T DTX4 Silent p.N97N 0.23 TCGA-CV-5432-01 11 59271271 59271271 T C OR4D11 Missense_Mutation p.S75P 0.32 deleterious(0) probably_damaging(0.912) TCGA-CV-5432-01 11 61583972 61583972 C T FADS1 Intron 0.33 TCGA-CV-5432-01 11 6231257 6231257 C T C11orf42 Silent p.L84L 0.60 TCGA-CV-5432-01 11 63137901 63137901 A G SLC22A9 Missense_Mutation p.I125V 0.23 deleterious(0) benign(0.001) TCGA-CV-5432-01 11 68518104 68518104 C A MTL5 Missense_Mutation p.G9W 0.36 deleterious_low_confidence(0) unknown(0) TCGA-CV-5432-01 11 7847305 7847305 C G OR5P3 Missense_Mutation p.G72A 0.64 tolerated(0.07) benign(0.026) TCGA-CV-5432-01 11 89935555 89935555 C A CHORDC1 3'UTR 0.54 TCGA-CV-5432-01 12 101767436 101767436 C A UTP20 Missense_Mutation p.T2341K 0.30 tolerated(1) benign(0.001) TCGA-CV-5432-01 12 11183779 11183779 C T TAS2R31 Silent p.A52A 0.20 TCGA-CV-5432-01 12 112186135 112186135 C A ACAD10 Missense_Mutation p.R865S 0.61 deleterious(0.03) benign(0.28) TCGA-CV-5432-01 12 113629589 113629589 G A RITA1 Silent p.G259G 0.63 TCGA-CV-5432-01 12 26774192 26774192 T C ITPR2 Missense_Mutation p.Y1109C 0.04 deleterious(0) probably_damaging(0.992) TCGA-CV-5432-01 12 27950849 27950849 C T KLHL42 Missense_Mutation p.T423I 0.25 tolerated(0.4) benign(0.006) TCGA-CV-5432-01 12 40041680 40041680 G T C12orf40 Silent p.V157V 0.20 TCGA-CV-5432-01 12 43833759 43833759 T A ADAMTS20 Missense_Mutation p.N802Y 0.70 deleterious(0) possibly_damaging(0.905) TCGA-CV-5432-01 12 45410203 45410203 G T DBX2 Missense_Mutation p.P296T 0.21 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-CV-5432-01 12 52863216 52863216 C G KRT6C Missense_Mutation p.G480R 0.07 deleterious(0.04) unknown(0) TCGA-CV-5432-01 12 62104166 62104166 G A FAM19A2 3'UTR 0.36 TCGA-CV-5432-01 12 67699449 67699449 A T CAND1 Missense_Mutation p.K667N 0.74 deleterious(0) probably_damaging(0.92) TCGA-CV-5432-01 12 7280932 7280932 C T RBP5 Silent p.V52V 0.21 TCGA-CV-5432-01 12 7973850 7973850 C T SLC2A14 Silent p.A335A 0.53 TCGA-CV-5432-01 12 81110924 81110924 T A MYF5 Missense_Mutation p.F28I 0.56 deleterious(0) benign(0.446) TCGA-CV-5432-01 13 103514530 103514530 C G BIVM-ERCC5 Missense_Mutation p.T770S 0.14 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-CV-5432-01 13 24876972 24876972 G T SPATA13 3'UTR 0.43 TCGA-CV-5432-01 14 21058898 21058898 C G RNASE12 5'UTR 0.36 TCGA-CV-5432-01 14 24727794 24727795 - ATGTCC TGM1 In_Frame_Ins p.M413_D414dup 0.12 TCGA-CV-5432-01 14 35262044 35262044 G A BAZ1A Nonsense_Mutation p.Q483* 0.15 TCGA-CV-5432-01 14 42356347 42356347 G T LRFN5 Missense_Mutation p.L173F 0.64 deleterious(0) probably_damaging(0.992) TCGA-CV-5432-01 14 42356804 42356804 A T LRFN5 Nonsense_Mutation p.K326* 0.10 TCGA-CV-5432-01 14 44976037 44976037 A G FSCB Missense_Mutation p.S52P 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-5432-01 14 55510854 55510854 G A SOCS4 Silent p.K365K 0.48 TCGA-CV-5432-01 14 64468757 64468757 A G SYNE2 Silent p.G1248G 0.47 TCGA-CV-5432-01 14 69542127 69542127 T C DCAF5 Missense_Mutation p.Y294C 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-CV-5432-01 14 70924226 70924226 G C ADAM21 Missense_Mutation p.D4H 0.08 tolerated(0.09) benign(0.015) TCGA-CV-5432-01 14 76633013 76633013 A C GPATCH2L Missense_Mutation p.S224R 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-5432-01 14 94568245 94568245 G T IFI27L1 Missense_Mutation p.K49N 0.22 deleterious(0.04) possibly_damaging(0.728) TCGA-CV-5432-01 14 95111301 95111301 G T SERPINA13P RNA 0.46 TCGA-CV-5432-01 15 22473086 22473086 C T IGHV4OR15-8 Missense_Mutation p.G62E 0.13 deleterious(0.04) probably_damaging(0.936) TCGA-CV-5432-01 15 24921689 24921689 C T NPAP1 Silent p.A225A 0.16 TCGA-CV-5432-01 15 25962006 25962006 G T ATP10A Silent p.A549A 0.20 TCGA-CV-5432-01 15 34021144 34021144 G T RYR3 Missense_Mutation p.G2374C 0.38 probably_damaging(0.992) TCGA-CV-5432-01 15 40710403 40710403 G T IVD Missense_Mutation p.G408W 0.21 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 15 48720627 48720627 C A FBN1 Missense_Mutation p.G2305W 0.53 probably_damaging(1) TCGA-CV-5432-01 15 49880219 49880219 C T FAM227B Silent p.K133K 0.27 TCGA-CV-5432-01 15 81517986 81517986 G T IL16 Missense_Mutation p.E82D 0.18 tolerated(0.16) benign(0.004) TCGA-CV-5432-01 16 10995377 10995377 C A CIITA Missense_Mutation p.P148Q 0.38 deleterious(0.01) possibly_damaging(0.786) TCGA-CV-5432-01 16 29825972 29825972 C A PRRT2 3'UTR 0.22 TCGA-CV-5432-01 16 3781826 3781826 G A CREBBP Missense_Mutation p.S1614F 0.26 unknown(0) TCGA-CV-5432-01 16 76389225 76389225 C A CNTNAP4 Silent p.G44G 0.13 TCGA-CV-5432-01 16 81942171 81942171 C G PLCG2 Missense_Mutation p.P570A 0.46 tolerated(0.12) benign(0.006) TCGA-CV-5432-01 17 10248871 10248871 G A MYH13 Silent p.V442V 0.37 TCGA-CV-5432-01 17 11543609 11543609 C T DNAH9 Silent p.N603N 0.73 TCGA-CV-5432-01 17 15215750 15215750 G C TEKT3 Silent p.L309L 0.08 TCGA-CV-5432-01 17 17910396 17910396 A G LRRC48 Missense_Mutation p.I421V 0.39 tolerated(0.23) benign(0.074) TCGA-CV-5432-01 17 26906469 26906469 C A SPAG5 Missense_Mutation p.M973I 0.46 tolerated(0.08) benign(0.004) TCGA-CV-5432-01 17 36520668 36520668 C G SOCS7 Missense_Mutation p.S296C 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-5432-01 17 37687138 37687138 T C CDK12 Missense_Mutation p.F1348L 0.04 benign(0.366) TCGA-CV-5432-01 17 38133511 38133511 C G GSDMA 3'UTR 0.11 TCGA-CV-5432-01 17 39190615 39190615 G A KRTAP1-3 Silent p.C153C 0.22 TCGA-CV-5432-01 17 40858050 40858050 C A EZH1 Missense_Mutation p.C605F 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-CV-5432-01 17 45891043 45891043 C A OSBPL7 Silent p.P503P 0.19 TCGA-CV-5432-01 17 48618421 48618421 C G EPN3 Missense_Mutation p.P416R 0.11 tolerated(0.08) benign(0.04) TCGA-CV-5432-01 17 4883214 4883214 G T CAMTA2 Nonsense_Mutation p.S491* 0.22 TCGA-CV-5432-01 17 67124870 67124870 G T ABCA6 Missense_Mutation p.L337I 0.14 tolerated(0.39) benign(0.06) TCGA-CV-5432-01 17 72588683 72588683 C T C17orf77 Silent p.C166C 0.21 TCGA-CV-5432-01 17 7297016 7297016 G A TMEM256-PLSCR3 Silent p.F49F 0.31 TCGA-CV-5432-01 17 7577018 7577018 C A TP53 Splice_Site p.X307_splice 0.78 TCGA-CV-5432-01 17 77078233 77078233 C G ENGASE Intron 0.30 TCGA-CV-5432-01 17 78219976 78219976 G T SLC26A11 Missense_Mutation p.G374V 0.18 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 18 10540342 10540342 G C NAPG Missense_Mutation p.R151P 0.41 deleterious(0) probably_damaging(0.956) TCGA-CV-5432-01 18 14752641 14752641 A C ANKRD30B Missense_Mutation p.N100H 0.52 deleterious(0) possibly_damaging(0.891) TCGA-CV-5432-01 18 23731942 23731942 A G PSMA8 Missense_Mutation p.K123R 0.13 deleterious(0.01) possibly_damaging(0.511) TCGA-CV-5432-01 18 29054239 29054239 A T DSG3 Missense_Mutation p.T753S 0.51 tolerated(0.66) benign(0.002) TCGA-CV-5432-01 18 3215034 3215034 C T MYOM1 Missense_Mutation p.R63Q 0.17 tolerated_low_confidence(1) benign(0.031) TCGA-CV-5432-01 18 34415329 34415329 T C KIAA1328 Missense_Mutation p.V76A 0.04 tolerated(0.23) benign(0.023) TCGA-CV-5432-01 18 34647234 34647234 C T KIAA1328 Missense_Mutation p.P320S 0.14 tolerated(0.44) benign(0.003) TCGA-CV-5432-01 18 40853629 40853629 C T SYT4 Silent p.G255G 0.66 TCGA-CV-5432-01 18 44579299 44579299 A T KATNAL2 5'UTR 0.64 TCGA-CV-5432-01 18 5291107 5291107 T A ZBTB14 Missense_Mutation p.D367V 0.20 tolerated(0.22) possibly_damaging(0.624) TCGA-CV-5432-01 18 5291112 5291112 C T ZBTB14 Missense_Mutation p.M365I 0.20 tolerated(1) benign(0.025) TCGA-CV-5432-01 19 10107183 10107183 C A COL5A3 Missense_Mutation p.A450S 0.19 unknown(0) TCGA-CV-5432-01 19 10624466 10624466 G A S1PR5 3'UTR 0.12 TCGA-CV-5432-01 19 14991735 14991735 C A OR7A17 Missense_Mutation p.V145F 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-CV-5432-01 19 30935052 30935052 G A ZNF536 Missense_Mutation p.E195K 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-CV-5432-01 19 39359687 39359687 C A RINL 3'UTR 0.22 TCGA-CV-5432-01 19 39868430 39868430 C A SAMD4B Missense_Mutation p.D470E 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-CV-5432-01 19 41450419 41450419 C T AC092071.1 5'Flank 0.23 TCGA-CV-5432-01 19 42863326 42863326 A T MEGF8 Missense_Mutation p.D1740V 0.45 tolerated(0.06) benign(0.038) TCGA-CV-5432-01 19 43585341 43585341 T A PSG2 Missense_Mutation p.Q41L 0.36 tolerated(0.16) benign(0.131) TCGA-CV-5432-01 19 44222679 44222679 G T IRGC 5'UTR 0.25 TCGA-CV-5432-01 19 44833219 44833219 T C ZNF112 Missense_Mutation p.H370R 0.25 tolerated(0.58) benign(0.007) TCGA-CV-5432-01 19 47761913 47761913 G T CCDC9 Missense_Mutation p.R34L 0.28 deleterious(0) probably_damaging(0.994) TCGA-CV-5432-01 19 48607867 48607867 C A PLA2G4C Missense_Mutation p.A89S 0.27 tolerated(0.31) benign(0.342) TCGA-CV-5432-01 19 50306435 50306435 G T AP2A1 Missense_Mutation p.R770L 0.30 deleterious(0) possibly_damaging(0.729) TCGA-CV-5432-01 19 52905281 52905281 G A ZNF528 Silent p.Q5Q 0.15 TCGA-CV-5432-01 19 55107222 55107222 G A LILRA1 Silent p.E260E 0.27 TCGA-CV-5432-01 19 55285082 55285082 T A KIR2DL1 Missense_Mutation p.I123K 0.29 deleterious(0) benign(0.046) TCGA-CV-5432-01 19 56423633 56423633 T C NLRP13 Missense_Mutation p.Y517C 0.35 deleterious(0) possibly_damaging(0.662) TCGA-CV-5432-01 19 56485041 56485041 A T NLRP8 Missense_Mutation p.Q853L 0.28 tolerated(0.31) benign(0) TCGA-CV-5432-01 19 57868528 57868528 A T ZNF304 Missense_Mutation p.N431Y 0.30 deleterious(0.04) possibly_damaging(0.804) TCGA-CV-5432-01 19 58001541 58001541 A C ZNF419 Silent p.T20T 0.38 TCGA-CV-5432-01 19 58945609 58945609 C G ZNF132 Missense_Mutation p.R401T 0.23 deleterious(0) possibly_damaging(0.812) TCGA-CV-5432-01 19 58945629 58945629 C G ZNF132 Missense_Mutation p.Q394H 0.22 deleterious(0.02) possibly_damaging(0.705) TCGA-CV-5432-01 19 58945685 58945685 C G ZNF132 Missense_Mutation p.E376Q 0.27 deleterious(0.03) possibly_damaging(0.686) TCGA-CV-5432-01 19 58945763 58945763 C A ZNF132 Missense_Mutation p.D350Y 0.19 deleterious(0.01) benign(0.007) TCGA-CV-5432-01 19 58946028 58946028 C G ZNF132 Missense_Mutation p.E261D 0.16 tolerated(0.32) benign(0.111) TCGA-CV-5432-01 19 8367311 8367311 C A CD320 3'UTR 0.24 TCGA-CV-5432-01 19 9062481 9062481 G T MUC16 Missense_Mutation p.T8322N 0.19 unknown(0) TCGA-CV-5432-01 1 103491779 103491779 T A COL11A1 Missense_Mutation p.Q297L 0.47 possibly_damaging(0.833) TCGA-CV-5432-01 1 12064156 12064156 C T MFN2 Missense_Mutation p.T423M 0.46 deleterious(0) possibly_damaging(0.727) TCGA-CV-5432-01 1 150131633 150131633 T A PLEKHO1 Missense_Mutation p.L382Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-CV-5432-01 1 152191599 152191599 C A HRNR Missense_Mutation p.G836C 0.29 unknown(0) TCGA-CV-5432-01 1 152283555 152283555 A T FLG Missense_Mutation p.S1269R 0.42 possibly_damaging(0.637) TCGA-CV-5432-01 1 152882594 152882594 G A IVL Silent p.Q107Q 0.40 TCGA-CV-5432-01 1 154528425 154528425 C G UBE2Q1 Missense_Mutation p.V115L 0.26 tolerated(0.09) benign(0.041) TCGA-CV-5432-01 1 157556137 157556137 G C FCRL4 Missense_Mutation p.T319S 0.28 deleterious(0.04) probably_damaging(0.938) TCGA-CV-5432-01 1 158324270 158324270 G C CD1E Missense_Mutation p.E54D 0.24 tolerated(0.06) benign(0.007) TCGA-CV-5432-01 1 160460424 160460424 C A SLAMF6 Missense_Mutation p.G233V 0.31 tolerated(0.28) benign(0.011) TCGA-CV-5432-01 1 170941012 170941012 C A MROH9 Silent p.R202R 0.27 TCGA-CV-5432-01 1 173174492 173174492 C A TNFSF4 Intron 0.25 TCGA-CV-5432-01 1 173176350 173176350 G A TNFSF4 5'UTR 0.21 TCGA-CV-5432-01 1 175375752 175375752 C A TNR Silent p.L33L 0.43 TCGA-CV-5432-01 1 179834003 179834003 A T IFRG15 Silent p.S103S 0.25 TCGA-CV-5432-01 1 180151443 180151443 C A QSOX1 Silent p.S247S 0.29 TCGA-CV-5432-01 1 184868311 184868311 C T FAM129A Splice_Site p.X62_splice 0.08 TCGA-CV-5432-01 1 186276244 186276244 A G PRG4 Missense_Mutation p.K465E 0.15 unknown(0) TCGA-CV-5432-01 1 19712012 19712012 C A CAPZB Missense_Mutation p.G68W 0.32 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 1 198687403 198687403 T G PTPRC Missense_Mutation p.L544R 0.53 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 1 198713288 198713288 A T PTPRC Missense_Mutation p.R935W 0.26 deleterious(0) probably_damaging(0.99) TCGA-CV-5432-01 1 198828018 198828018 G T MIR181B1 RNA 0.36 TCGA-CV-5432-01 1 201821282 201821282 A G IPO9 Missense_Mutation p.I189V 0.20 tolerated(0.1) benign(0.338) TCGA-CV-5432-01 1 207739242 207739242 G T CR1 Missense_Mutation p.W1309L 0.18 deleterious(0) possibly_damaging(0.695) TCGA-CV-5432-01 1 228612628 228612628 C A HIST3H3 Silent p.G133G 0.38 TCGA-CV-5432-01 1 233750265 233750265 C T KCNK1 Silent p.S116S 0.21 TCGA-CV-5432-01 1 235628912 235628912 G A B3GALNT2 Intron 0.17 TCGA-CV-5432-01 1 241798800 241798800 C G CHML Missense_Mutation p.R90P 0.36 tolerated(0.26) benign(0.004) TCGA-CV-5432-01 1 247593033 247593033 C T NLRP3 Missense_Mutation p.P768L 0.20 deleterious(0.01) possibly_damaging(0.804) TCGA-CV-5432-01 1 247655019 247655019 C A OR2W5 RNA 0.22 TCGA-CV-5432-01 1 248458823 248458823 T C OR2T12 Missense_Mutation p.R20G 0.38 tolerated(0.32) benign(0) TCGA-CV-5432-01 1 248525119 248525119 T C OR2T4 Silent p.L79L 0.39 TCGA-CV-5432-01 1 248525375 248525375 C G OR2T4 Missense_Mutation p.P165A 0.19 deleterious(0.02) benign(0.029) TCGA-CV-5432-01 1 27627909 27627909 G A WDTC1 Silent p.L474L 0.69 TCGA-CV-5432-01 1 45205546 45205546 G A KIF2C 5'UTR 0.63 TCGA-CV-5432-01 1 68948183 68948183 C T DEPDC1 Silent p.E436E 0.59 TCGA-CV-5432-01 1 880925 880925 C A NOC2L Missense_Mutation p.D676Y 0.70 deleterious(0) possibly_damaging(0.873) TCGA-CV-5432-01 20 1285749 1285749 C T SNPH Missense_Mutation p.T179M 0.26 deleterious(0) probably_damaging(0.988) TCGA-CV-5432-01 20 14066362 14066362 A G MACROD2 Missense_Mutation p.I87V 0.20 deleterious(0.02) probably_damaging(0.971) TCGA-CV-5432-01 20 17600950 17600950 C T RRBP1 Silent p.S758S 0.23 TCGA-CV-5432-01 20 21687085 21687085 A G PAX1 Missense_Mutation p.Y99C 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CV-5432-01 20 29632694 29632694 G T FRG1B Missense_Mutation p.G170V 0.06 deleterious(0) possibly_damaging(0.86) TCGA-CV-5432-01 20 33609096 33609096 C T TRPC4AP Missense_Mutation p.R372K 0.26 tolerated(0.12) possibly_damaging(0.53) TCGA-CV-5432-01 20 36776383 36776383 C A TGM2 Missense_Mutation p.G221C 0.41 tolerated(0.2) benign(0.135) TCGA-CV-5432-01 20 42885797 42885797 G T GDAP1L1 Missense_Mutation p.R62L 0.77 tolerated(0.33) probably_damaging(0.996) TCGA-CV-5432-01 20 54575848 54575848 C G CBLN4 Missense_Mutation p.R116T 0.25 tolerated(0.11) possibly_damaging(0.777) TCGA-CV-5432-01 20 57781960 57781960 G C ZNF831 Missense_Mutation p.R1292S 0.22 deleterious(0) probably_damaging(0.991) TCGA-CV-5432-01 21 11039019 11039019 A C BAGE2 RNA 0.03 TCGA-CV-5432-01 21 33647184 33647184 C G MIS18A Missense_Mutation p.D120H 0.83 deleterious(0.01) probably_damaging(0.96) TCGA-CV-5432-01 21 43187145 43187145 C A RIPK4 Silent p.A19A 0.47 TCGA-CV-5432-01 21 44195393 44195393 A G PDE9A Missense_Mutation p.D591G 0.36 tolerated_low_confidence(0.16) benign(0) TCGA-CV-5432-01 22 22786685 22786685 T C IGLV1-36 Missense_Mutation p.S79P 0.46 tolerated_low_confidence(0.38) benign(0.001) TCGA-CV-5432-01 22 22989484 22989484 G C GGTLC2 Silent p.T112T 0.25 TCGA-CV-5432-01 22 39387522 39387522 G C APOBEC3B Silent p.V303V 0.11 TCGA-CV-5432-01 22 46114314 46114314 C T ATXN10 Silent p.L223L 0.18 TCGA-CV-5432-01 2 109367719 109367719 G T RANBP2 Splice_Site p.X425_splice 0.33 TCGA-CV-5432-01 2 116283477 116283477 A T DPP10 Missense_Mutation p.T128S 0.12 tolerated(0.98) benign(0.003) TCGA-CV-5432-01 2 116497324 116497324 T A DPP10 Missense_Mutation p.L240Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-CV-5432-01 2 125281880 125281880 G A CNTNAP5 Missense_Mutation p.G442D 0.49 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 2 127806012 127806012 T A BIN1 3'UTR 0.14 TCGA-CV-5432-01 2 138414459 138414459 G T THSD7B Missense_Mutation p.R1403I 0.19 deleterious(0) unknown(0) TCGA-CV-5432-01 2 141709504 141709504 G T LRP1B Missense_Mutation p.P965T 0.18 probably_damaging(0.973) TCGA-CV-5432-01 2 145157042 145157042 A G ZEB2 Missense_Mutation p.M571T 0.22 tolerated(0.6) benign(0.062) TCGA-CV-5432-01 2 152486055 152486055 C A NEB Missense_Mutation p.D3277Y 0.16 probably_damaging(0.955) TCGA-CV-5432-01 2 15496497 15496497 T A NBAS Missense_Mutation p.L1287F 0.07 deleterious(0) probably_damaging(0.987) TCGA-CV-5432-01 2 155295167 155295167 C T GALNT13 Missense_Mutation p.L487F 0.13 tolerated(0.26) benign(0.044) TCGA-CV-5432-01 2 1642655 1642655 A G PXDN Missense_Mutation p.L1390P 0.18 tolerated(0.27) benign(0.141) TCGA-CV-5432-01 2 164467941 164467941 C G FIGN Missense_Mutation p.G134A 0.26 tolerated(1) probably_damaging(0.992) TCGA-CV-5432-01 2 165795989 165795989 A C SLC38A11 Missense_Mutation p.L114V 0.15 deleterious(0) probably_damaging(0.99) TCGA-CV-5432-01 2 1670117 1670117 G T PXDN Missense_Mutation p.P387Q 0.17 tolerated(0.49) possibly_damaging(0.664) TCGA-CV-5432-01 2 167328890 167328890 G T SCN7A Missense_Mutation p.A170E 0.21 deleterious(0.04) possibly_damaging(0.872) TCGA-CV-5432-01 2 179438979 179438979 G T TTN Silent p.I23960I 0.21 TCGA-CV-5432-01 2 179474460 179474460 A G TTN Silent p.I17230I 0.48 TCGA-CV-5432-01 2 179516662 179516662 C T TTN Missense_Mutation p.E13110K 0.25 TCGA-CV-5432-01 2 179582094 179582094 G A TTN Missense_Mutation p.P8456L 0.22 TCGA-CV-5432-01 2 179584098 179584098 G A TTN Nonsense_Mutation p.R8007* 0.12 TCGA-CV-5432-01 2 179654130 179654130 G A TTN Missense_Mutation p.T678I 0.35 TCGA-CV-5432-01 2 179659664 179659664 G A TTN Silent p.A410A 0.36 TCGA-CV-5432-01 2 179665398 179665398 G A TTN Missense_Mutation p.P103S 0.46 TCGA-CV-5432-01 2 186678713 186678713 C A FSIP2 Missense_Mutation p.P6846T 0.19 benign(0.018) TCGA-CV-5432-01 2 216235085 216235085 A G FN1 Missense_Mutation p.I2262T 0.27 deleterious(0) benign(0.236) TCGA-CV-5432-01 2 220073562 220073562 A T ZFAND2B Intron 0.50 TCGA-CV-5432-01 2 220437168 220437168 G A INHA Silent p.L24L 0.49 TCGA-CV-5432-01 2 225365205 225365205 C A CUL3 Splice_Site p.X496_splice 0.21 TCGA-CV-5432-01 2 227924319 227924319 C A COL4A4 Missense_Mutation p.D729Y 0.23 possibly_damaging(0.884) TCGA-CV-5432-01 2 241530316 241530316 G T CAPN10 Missense_Mutation p.V120L 0.22 tolerated(0.06) benign(0.098) TCGA-CV-5432-01 2 37505011 37505011 G T PRKD3 Missense_Mutation p.L432M 0.64 tolerated(0.25) benign(0.079) TCGA-CV-5432-01 2 42720364 42720364 G C KCNG3 Missense_Mutation p.S93C 0.69 deleterious(0) probably_damaging(0.999) TCGA-CV-5432-01 2 55470638 55470638 C T MTIF2 Missense_Mutation p.R493Q 0.39 tolerated(0.47) benign(0.001) TCGA-CV-5432-01 2 63176055 63176055 G T EHBP1 Missense_Mutation p.D727Y 0.40 deleterious_low_confidence(0.01) benign(0.089) TCGA-CV-5432-01 2 74719855 74719855 G C TTC31 Missense_Mutation p.C415S 0.26 deleterious(0) possibly_damaging(0.756) TCGA-CV-5432-01 2 74906906 74906906 G T SEMA4F Missense_Mutation p.C628F 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-5432-01 2 77745756 77745756 T G LRRTM4 Silent p.A413A 0.58 TCGA-CV-5432-01 2 97464940 97464940 G T CNNM4 Missense_Mutation p.D610Y 0.34 deleterious(0) probably_damaging(0.995) TCGA-CV-5432-01 3 108568076 108568076 T A TRAT1 Missense_Mutation p.M93K 0.20 tolerated(0.29) benign(0.001) TCGA-CV-5432-01 3 109026954 109026954 T C DPPA2 Missense_Mutation p.R195G 0.20 deleterious(0) benign(0.171) TCGA-CV-5432-01 3 118621324 118621324 G T IGSF11 3'UTR 0.19 TCGA-CV-5432-01 3 122646669 122646669 C A SEMA5B Missense_Mutation p.R327L 0.12 deleterious(0.04) probably_damaging(0.969) TCGA-CV-5432-01 3 123987646 123987646 G A KALRN Silent p.T169T 0.19 TCGA-CV-5432-01 3 134089875 134089875 C A AMOTL2 Missense_Mutation p.R134L 0.63 tolerated(0.18) benign(0.22) TCGA-CV-5432-01 3 148459551 148459551 G A AGTR1 Missense_Mutation p.M243I 0.70 tolerated(0.74) benign(0.001) TCGA-CV-5432-01 3 152553781 152553781 C A P2RY1 Missense_Mutation p.S70R 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-CV-5432-01 3 155199248 155199248 C A PLCH1 Missense_Mutation p.V1531L 0.15 tolerated(0.74) benign(0.003) TCGA-CV-5432-01 3 172674544 172674544 A T SPATA16 Missense_Mutation p.I335K 0.08 tolerated(0.09) benign(0.02) TCGA-CV-5432-01 3 190366326 190366326 G T IL1RAP Intron 0.11 TCGA-CV-5432-01 3 193366587 193366587 G T OPA1 Nonsense_Mutation p.E629* 0.22 TCGA-CV-5432-01 3 194408726 194408726 A T FAM43A Missense_Mutation p.S391C 0.32 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CV-5432-01 3 28520394 28520394 G C ZCWPW2 Silent p.L194L 0.11 TCGA-CV-5432-01 3 28520395 28520395 G T ZCWPW2 Nonsense_Mutation p.E195* 0.12 TCGA-CV-5432-01 3 37048514 37048514 C G MLH1 Missense_Mutation p.P138R 0.42 deleterious(0.02) possibly_damaging(0.595) TCGA-CV-5432-01 3 38949584 38949584 A C SCN11A Missense_Mutation p.S443R 0.43 tolerated(0.09) possibly_damaging(0.894) TCGA-CV-5432-01 3 50091779 50091779 C T RBM6 Silent p.N548N 0.18 TCGA-CV-5432-01 3 73016867 73016867 G T GXYLT2 Silent p.R382R 0.16 TCGA-CV-5432-01 3 73433279 73433279 T G PDZRN3 Missense_Mutation p.E813A 0.24 tolerated(0.39) benign(0.002) TCGA-CV-5432-01 3 74411124 74411124 G T CNTN3 Silent p.V427V 0.17 TCGA-CV-5432-01 3 75477026 75477026 T C FAM86DP RNA 0.44 TCGA-CV-5432-01 3 78766929 78766929 G A ROBO1 Silent p.A254A 0.24 TCGA-CV-5432-01 3 85961535 85961535 T G CADM2 Nonsense_Mutation p.L174* 0.12 TCGA-CV-5432-01 3 89156987 89156987 G C EPHA3 Splice_Site p.X30_splice 0.31 TCGA-CV-5432-01 4 115858477 115858477 G T NDST4 Silent p.I468I 0.77 TCGA-CV-5432-01 4 149356316 149356316 A T NR3C2 Missense_Mutation p.L566Q 0.27 deleterious(0.01) possibly_damaging(0.902) TCGA-CV-5432-01 4 40104316 40104316 T C N4BP2 Missense_Mutation p.V284A 0.65 tolerated(0.13) benign(0.007) TCGA-CV-5432-01 4 5754629 5754629 G A EVC Missense_Mutation p.V389I 0.23 tolerated(1) benign(0.004) TCGA-CV-5432-01 4 5975389 5975389 T C C4orf50 Silent p.P609P 0.58 TCGA-CV-5432-01 4 62679530 62679530 A C LPHN3 Missense_Mutation p.Q400P 0.50 tolerated(0.9) benign(0.001) TCGA-CV-5432-01 4 62679532 62679532 G T LPHN3 Missense_Mutation p.A401S 0.47 tolerated(0.56) benign(0.001) TCGA-CV-5432-01 4 71201994 71201994 A G CABS1 3'UTR 0.70 TCGA-CV-5432-01 4 7533275 7533275 G A SORCS2 Silent p.T189T 0.57 TCGA-CV-5432-01 4 89607922 89607922 A G HERC3 Missense_Mutation p.D848G 0.46 deleterious(0) possibly_damaging(0.63) TCGA-CV-5432-01 4 94006249 94006249 C A GRID2 Missense_Mutation p.H116Q 0.52 deleterious(0.01) probably_damaging(1) TCGA-CV-5432-01 5 128301819 128301819 C T SLC27A6 5'UTR 0.48 TCGA-CV-5432-01 5 13859686 13859686 G A DNAH5 Nonsense_Mutation p.Q1609* 0.25 TCGA-CV-5432-01 5 140176015 140176015 T A PCDHA2 Missense_Mutation p.L489Q 0.35 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-CV-5432-01 5 140262396 140262396 C T PCDHA13 Silent p.D181D 0.13 TCGA-CV-5432-01 5 140537185 140537185 C G PCDHB17 Missense_Mutation p.R537G 0.59 tolerated_low_confidence(0.22) benign(0.032) TCGA-CV-5432-01 5 140537575 140537575 G T PCDHB17 3'UTR 0.32 TCGA-CV-5432-01 5 19839081 19839081 G A CDH18 Silent p.S5S 0.57 TCGA-CV-5432-01 5 23522455 23522455 G T PRDM9 Missense_Mutation p.R184L 0.52 deleterious(0.04) possibly_damaging(0.706) TCGA-CV-5432-01 5 23527462 23527462 G T PRDM9 Silent p.R755R 0.49 TCGA-CV-5432-01 5 24488121 24488121 C - CDH10 Frame_Shift_Del p.G673Afs*3 0.29 TCGA-CV-5432-01 5 33616118 33616118 C A ADAMTS12 Nonsense_Mutation p.E735* 0.23 TCGA-CV-5432-01 5 40853377 40853377 C T CARD6 Missense_Mutation p.A648V 0.48 tolerated(0.34) benign(0.028) TCGA-CV-5432-01 5 41052600 41052600 G T MROH2B Silent p.V399V 0.19 TCGA-CV-5432-01 5 88047672 88047672 A T MEF2C Splice_Site p.X215_splice 0.28 TCGA-CV-5432-01 6 100964151 100964151 C A ASCC3 Nonsense_Mutation p.E1994* 0.56 TCGA-CV-5432-01 6 118596758 118596758 A G SLC35F1 Silent p.A258A 0.15 TCGA-CV-5432-01 6 160978515 160978515 A G LPA Missense_Mutation p.C1574R 0.53 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 6 24861201 24861201 C A FAM65B Missense_Mutation p.G210C 0.67 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 6 26246948 26246948 G T HIST1H4G Silent p.A86A 0.65 TCGA-CV-5432-01 6 56341031 56341031 C A DST Missense_Mutation p.W4637C 0.56 probably_damaging(1) TCGA-CV-5432-01 6 64395424 64395424 C A PHF3 Missense_Mutation p.H601N 0.07 tolerated(0.38) benign(0.07) TCGA-CV-5432-01 6 71570005 71570005 G T SMAP1 Missense_Mutation p.G458C 0.12 deleterious(0) unknown(0) TCGA-CV-5432-01 6 79711634 79711634 T A PHIP Missense_Mutation p.M621L 0.64 tolerated(1) benign(0.002) TCGA-CV-5432-01 6 88387536 88387536 C A AKIRIN2 Nonsense_Mutation p.E177* 0.37 TCGA-CV-5432-01 7 100681637 100681637 A G MUC17 Missense_Mutation p.T2314A 0.44 unknown(0) TCGA-CV-5432-01 7 1040142 1040142 C T C7orf50 Silent p.Q123Q 0.55 TCGA-CV-5432-01 7 119915648 119915648 C G KCND2 Missense_Mutation p.A321G 0.43 deleterious(0.01) probably_damaging(1) TCGA-CV-5432-01 7 121671535 121671535 C T PTPRZ1 Silent p.V1696V 0.39 TCGA-CV-5432-01 7 124387345 124387345 C T GPR37 Missense_Mutation p.R359H 0.12 deleterious(0.01) probably_damaging(1) TCGA-CV-5432-01 7 142498951 142498951 G T TRBC2 Silent p.L76L 0.16 TCGA-CV-5432-01 7 143079743 143079743 G A ZYX Missense_Mutation p.D156N 0.41 tolerated(0.08) unknown(0) TCGA-CV-5432-01 7 143806846 143806846 C A OR2A2 Silent p.P57P 0.44 TCGA-CV-5432-01 7 152551645 152551645 C T ACTR3B 3'UTR 0.42 TCGA-CV-5432-01 7 20403258 20403258 A T ITGB8 Splice_Site p.X43_splice 0.72 TCGA-CV-5432-01 7 32598671 32598671 A T AVL9 Silent p.S270S 0.38 TCGA-CV-5432-01 7 38402543 38402543 T A TRGV2 Silent p.T92T 0.30 TCGA-CV-5432-01 7 47453532 47453532 C G TNS3 Intron 0.19 TCGA-CV-5432-01 7 48035729 48035729 C G SUN3 Missense_Mutation p.E198Q 0.15 tolerated(0.12) benign(0.174) TCGA-CV-5432-01 7 5239204 5239204 C G WIPI2 Intron 0.64 TCGA-CV-5432-01 7 70255697 70255697 G A AUTS2 Silent p.T1165T 0.31 TCGA-CV-5432-01 7 81335729 81335729 T A HGF Missense_Mutation p.Y544F 0.26 tolerated(0.06) probably_damaging(0.946) TCGA-CV-5432-01 7 82580192 82580192 C - PCLO Frame_Shift_Del p.E3238Nfs*26 0.24 TCGA-CV-5432-01 7 93108690 93108690 G A CALCR Nonsense_Mutation p.Q79* 0.29 TCGA-CV-5432-01 8 105510273 105510273 A T LRP12 Missense_Mutation p.D169E 0.36 tolerated(0.13) benign(0.174) TCGA-CV-5432-01 8 110431467 110431467 A T PKHD1L1 Silent p.T834T 0.12 TCGA-CV-5432-01 8 114389046 114389046 G C CSMD3 Intron 0.20 TCGA-CV-5432-01 8 139649040 139649040 T G COL22A1 Splice_Site p.X1168_splice 0.31 TCGA-CV-5432-01 8 144995520 144995520 G A PLEC Silent p.R2960R 0.10 TCGA-CV-5432-01 8 2056622 2056622 G A MYOM2 Splice_Site p.X1015_splice 0.35 TCGA-CV-5432-01 8 21848388 21848388 A G XPO7 Missense_Mutation p.T667A 0.21 tolerated(0.1) benign(0.033) TCGA-CV-5432-01 8 26365820 26365820 G A PNMA2 Missense_Mutation p.A151V 0.22 tolerated(0.37) benign(0.002) TCGA-CV-5432-01 8 42823227 42823227 G A HOOK3 Missense_Mutation p.G331D 0.32 tolerated(0.1) probably_damaging(0.934) TCGA-CV-5432-01 8 48715931 48715931 G A PRKDC Silent p.C3285C 0.28 TCGA-CV-5432-01 8 67578251 67578251 A T VCPIP1 Missense_Mutation p.S315T 0.36 tolerated(0.09) probably_damaging(0.966) TCGA-CV-5432-01 8 68184095 68184095 T A ARFGEF1 Missense_Mutation p.R472W 0.16 deleterious(0) possibly_damaging(0.886) TCGA-CV-5432-01 8 69552738 69552738 G T C8orf34 Missense_Mutation p.R411S 0.35 deleterious(0) probably_damaging(0.99) TCGA-CV-5432-01 8 73848742 73848742 T C KCNB2 Silent p.Y384Y 0.18 TCGA-CV-5432-01 8 77764235 77764235 A T ZFHX4 Missense_Mutation p.Q1693L 0.24 benign(0.145) TCGA-CV-5432-01 8 85441758 85441758 G A RALYL Missense_Mutation p.A81T 0.16 deleterious(0.02) probably_damaging(0.983) TCGA-CV-5432-01 8 8750004 8750004 C G MFHAS1 Missense_Mutation p.D189H 0.46 deleterious(0.03) probably_damaging(0.977) TCGA-CV-5432-01 8 92365165 92365165 G T SLC26A7 Nonsense_Mutation p.G419* 0.37 TCGA-CV-5432-01 9 101800963 101800963 T A COL15A1 Missense_Mutation p.I808N 0.21 tolerated(0.5) benign(0.054) TCGA-CV-5432-01 9 103109584 103109584 G A TEX10 Silent p.H95H 0.25 TCGA-CV-5432-01 9 119567939 119567939 G A ASTN2 Nonsense_Mutation p.Q739* 0.46 TCGA-CV-5432-01 9 120470905 120470905 C A TLR4 Missense_Mutation p.P53H 0.26 deleterious(0) probably_damaging(0.984) TCGA-CV-5432-01 9 134090708 134090708 A T NUP214 Missense_Mutation p.N1901I 0.51 possibly_damaging(0.878) TCGA-CV-5432-01 9 139273626 139273626 C T SNAPC4 Missense_Mutation p.G885S 0.45 deleterious(0.04) probably_damaging(0.984) TCGA-CV-5432-01 9 139402542 139402542 C G NOTCH1 Silent p.A1125A 0.15 TCGA-CV-5432-01 9 140109611 140109611 C G NDOR1 Missense_Mutation p.P377R 0.39 deleterious(0) probably_damaging(0.999) TCGA-CV-5432-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.38 TCGA-CV-5432-01 9 35750932 35750932 G T RGP1 Missense_Mutation p.V145F 0.74 tolerated(0.07) possibly_damaging(0.737) TCGA-CV-5432-01 9 36109951 36109951 C G RECK Intron 0.17 TCGA-CV-5432-01 9 86584314 86584314 A G HNRNPK 3'UTR 0.47 TCGA-CV-5432-01 9 94499675 94499675 G A ROR2 Missense_Mutation p.T207I 0.42 deleterious(0.03) possibly_damaging(0.688) TCGA-CV-5432-01 X 105882844 105882844 G T CXorf57 Missense_Mutation p.G554V 0.64 deleterious(0) probably_damaging(1) TCGA-CV-5432-01 X 107037529 107037529 C A NCBP2L Missense_Mutation p.R27S 0.75 tolerated(1) benign(0) TCGA-CV-5432-01 X 112033827 112033827 C A AMOT Missense_Mutation p.A704S 0.61 unknown(0) TCGA-CV-5432-01 X 117783069 117783069 C G DOCK11 Silent p.T1520T 0.62 TCGA-CV-5432-01 X 140995560 140995560 T C MAGEC1 Silent p.L790L 0.64 TCGA-CV-5432-01 X 140995929 140995929 C T MAGEC1 Silent p.D913D 0.62 TCGA-CV-5432-01 X 151560699 151560699 G A GABRA3 Intron 0.14 TCGA-CV-5432-01 X 1551172 1551172 C A ASMTL Missense_Mutation p.G167W 0.50 deleterious(0.03) probably_damaging(1) TCGA-CV-5432-01 X 19022897 19022897 A G GPR64 Missense_Mutation p.L647P 0.63 deleterious(0) probably_damaging(0.991) TCGA-CV-5432-01 X 37028482 37028482 C T FAM47C Missense_Mutation p.P667S 0.54 tolerated(0.43) benign(0.006) TCGA-CV-5432-01 X 54492197 54492197 C T FGD1 Missense_Mutation p.A477T 0.81 deleterious(0) probably_damaging(0.996) TCGA-CV-5432-01 X 67938280 67938280 C A STARD8 Silent p.T508T 0.54 TCGA-CV-5432-01 X 73962130 73962130 G T KIAA2022 Silent p.S754S 0.63 TCGA-CV-5432-01 X 75004022 75004022 G T MAGEE2 Missense_Mutation p.L289M 0.32 tolerated(0.17) benign(0.086) TCGA-CV-5434-01 10 135123687 135123687 G A ZNF511 Missense_Mutation p.G150D 0.40 deleterious(0) benign(0.387) TCGA-CV-5434-01 10 46999984 46999984 G T GPRIN2 Silent p.L368L 0.10 TCGA-CV-5434-01 10 5247720 5247720 C A AKR1C4 Missense_Mutation p.P124T 0.83 deleterious(0) possibly_damaging(0.882) TCGA-CV-5434-01 11 102734976 102734976 C T MMP12 RNA 0.19 TCGA-CV-5434-01 11 1973401 1973401 A G MRPL23 Missense_Mutation p.N62S 0.55 tolerated(0.12) benign(0.084) TCGA-CV-5434-01 11 31123808 31123808 A G DCDC1 Silent p.F633F 0.46 TCGA-CV-5434-01 11 60901634 60901634 G A VPS37C Missense_Mutation p.R47W 0.25 deleterious(0) probably_damaging(1) TCGA-CV-5434-01 11 67219165 67219165 G A GPR152 Missense_Mutation p.P344L 0.28 tolerated(0.09) benign(0.021) TCGA-CV-5434-01 11 67560591 67560591 G A FAM86C2P RNA 0.12 TCGA-CV-5434-01 11 82444616 82444616 C A FAM181B Silent p.S52S 0.43 TCGA-CV-5434-01 12 104492210 104492210 G T HCFC2 Missense_Mutation p.L610F 0.40 tolerated(0.37) probably_damaging(0.979) TCGA-CV-5434-01 12 105536970 105536970 T C KIAA1033 Silent p.Y653Y 0.08 TCGA-CV-5434-01 12 113599728 113599728 C G DDX54 Missense_Mutation p.R757P 0.34 tolerated(0.26) benign(0.265) TCGA-CV-5434-01 12 121735513 121735513 G A CAMKK2 5'UTR 0.47 TCGA-CV-5434-01 12 130898786 130898786 C T RIMBP2 Missense_Mutation p.E846K 0.34 tolerated(0.15) benign(0.21) TCGA-CV-5434-01 12 14591118 14591118 G A ATF7IP Missense_Mutation p.D616N 0.19 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-CV-5434-01 12 15669884 15669884 A T PTPRO Silent p.A591A 0.42 TCGA-CV-5434-01 12 18872484 18872484 A G PLCZ1 Silent p.C150C 0.14 TCGA-CV-5434-01 12 1963138 1963138 G A CACNA2D4 Missense_Mutation p.A742V 0.20 tolerated(0.11) benign(0.158) TCGA-CV-5434-01 12 22061049 22061054 TAAAGT - ABCC9 In_Frame_Del p.Y471_I473delinsF 0.37 TCGA-CV-5434-01 12 22487097 22487097 G A ST8SIA1 Missense_Mutation p.P24S 0.43 tolerated(0.14) possibly_damaging(0.477) TCGA-CV-5434-01 12 49447085 49447086 - AC KMT2D Frame_Shift_Ins p.K287Vfs*18 0.25 TCGA-CV-5434-01 12 6055399 6055399 G A ANO2 5'Flank 0.06 TCGA-CV-5434-01 12 70925945 70925945 C A PTPRB Missense_Mutation p.G2125V 0.29 deleterious(0) probably_damaging(1) TCGA-CV-5434-01 12 71078046 71078046 T A PTPRR Splice_Site p.X454_splice 0.34 TCGA-CV-5434-01 12 7469736 7469736 C T ACSM4 Silent p.F208F 0.28 TCGA-CV-5434-01 13 19755884 19755884 C T TUBA3C Splice_Site p.X1_splice 0.59 TCGA-CV-5434-01 13 39266020 39266020 T C FREM2 Silent p.D1513D 0.22 TCGA-CV-5434-01 13 39266021 39266021 G T FREM2 Nonsense_Mutation p.G1514* 0.21 TCGA-CV-5434-01 14 73198527 73198527 G C DPF3 Missense_Mutation p.I139M 0.23 tolerated(0.2) benign(0.065) TCGA-CV-5434-01 14 73749071 73749071 G T NUMB Missense_Mutation p.F364L 0.18 tolerated(0.69) benign(0.001) TCGA-CV-5434-01 15 50273431 50273431 T G ATP8B4 Missense_Mutation p.D270A 0.12 deleterious(0) probably_damaging(1) TCGA-CV-5434-01 15 58357778 58357778 T C ALDH1A2 Missense_Mutation p.H24R 0.19 tolerated_low_confidence(0.39) benign(0.05) TCGA-CV-5434-01 15 65115989 65115989 G A PIF1 Silent p.A182A 0.15 TCGA-CV-5434-01 15 74425155 74425155 C - ISLR2 Frame_Shift_Del p.P21Rfs*33 0.25 TCGA-CV-5434-01 15 89449094 89449094 G A MFGE8 Silent p.V193V 0.27 TCGA-CV-5434-01 16 10788293 10788293 C G TEKT5 Silent p.S146S 0.22 TCGA-CV-5434-01 16 2764207 2764207 C T PRSS27 Missense_Mutation p.A123T 0.26 deleterious(0) possibly_damaging(0.581) TCGA-CV-5434-01 16 48250115 48250115 C T ABCC11 Silent p.S287S 0.19 TCGA-CV-5434-01 16 50709754 50709754 C A SNX20 Missense_Mutation p.R70L 0.16 tolerated(0.15) benign(0.081) TCGA-CV-5434-01 16 89789220 89789220 G A ZNF276 Missense_Mutation p.G163S 0.16 tolerated(0.07) benign(0.043) TCGA-CV-5434-01 17 11895778 11895778 G A ZNF18 Silent p.P123P 0.39 TCGA-CV-5434-01 17 15406116 15406116 T C TVP23C 3'UTR 0.31 TCGA-CV-5434-01 17 20924462 20924462 C T USP22 Missense_Mutation p.A128T 0.38 deleterious(0.04) benign(0.284) TCGA-CV-5434-01 17 21215472 21215472 C T MAP2K3 Missense_Mutation p.R265W 0.07 deleterious(0.01) possibly_damaging(0.849) TCGA-CV-5434-01 17 34863298 34863298 G C MYO19 Missense_Mutation p.N469K 0.55 deleterious(0) probably_damaging(1) TCGA-CV-5434-01 17 37826489 37826489 G A PNMT Silent p.V232V 0.64 TCGA-CV-5434-01 17 37865676 37865676 C T ERBB2 Missense_Mutation p.T182I 0.26 tolerated(0.44) benign(0.002) TCGA-CV-5434-01 17 42940103 42940103 G A EFTUD2 Missense_Mutation p.R529C 0.11 deleterious(0.04) probably_damaging(0.982) TCGA-CV-5434-01 17 5365857 5365857 T C DHX33 Missense_Mutation p.T154A 0.22 tolerated(0.24) benign(0.257) TCGA-CV-5434-01 17 58511472 58511472 C A C17orf64 3'Flank 0.35 TCGA-CV-5434-01 17 62126509 62126509 A T ERN1 Silent p.S769S 0.47 TCGA-CV-5434-01 17 65026643 65026643 C A CACNG4 Missense_Mutation p.D169E 0.31 tolerated(0.23) possibly_damaging(0.696) TCGA-CV-5434-01 17 74077642 74077642 C T ZACN Missense_Mutation p.T229M 0.26 deleterious(0) probably_damaging(0.998) TCGA-CV-5434-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.50 deleterious(0) probably_damaging(0.996) TCGA-CV-5434-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.33 TCGA-CV-5434-01 17 80790065 80790065 T A ZNF750 Missense_Mutation p.K89M 0.29 deleterious(0.01) probably_damaging(0.912) TCGA-CV-5434-01 17 8170695 8170695 C T PFAS Missense_Mutation p.P1061S 0.38 tolerated(0.93) benign(0.001) TCGA-CV-5434-01 18 54385258 54385258 C T WDR7 Nonsense_Mutation p.R548* 0.36 TCGA-CV-5434-01 19 10600447 10600447 G A KEAP1 Missense_Mutation p.R470C 0.53 deleterious(0.01) benign(0.136) TCGA-CV-5434-01 19 2121212 2121212 G A AP3D1 Silent p.I400I 0.52 TCGA-CV-5434-01 19 21948566 21948566 C T ZNF100 Missense_Mutation p.C9Y 0.27 tolerated_low_confidence(0.68) benign(0) TCGA-CV-5434-01 19 22155123 22155123 T G ZNF208 Missense_Mutation p.T905P 0.22 tolerated(0.14) unknown(0) TCGA-CV-5434-01 19 38127001 38127001 C G ZFP30 Silent p.L147L 0.12 TCGA-CV-5434-01 19 41188693 41188693 G A NUMBL Silent p.S113S 0.11 TCGA-CV-5434-01 19 47423172 47423172 C T ARHGAP35 Nonsense_Mutation p.Q414* 0.70 TCGA-CV-5434-01 19 48887692 48887692 C T KDELR1 Silent p.P133P 0.56 TCGA-CV-5434-01 19 51411651 51411651 G T KLK4 Nonsense_Mutation p.C192* 0.51 TCGA-CV-5434-01 19 53384345 53384345 T A ZNF320 Missense_Mutation p.E345V 0.72 tolerated(0.34) benign(0.115) TCGA-CV-5434-01 19 55831420 55831420 A T TMEM150B Missense_Mutation p.V104E 0.83 deleterious(0) probably_damaging(0.996) TCGA-CV-5434-01 19 58370285 58370285 C T ZNF587 Missense_Mutation p.P169S 0.24 tolerated(0.26) benign(0.001) TCGA-CV-5434-01 19 58565249 58565249 C T ZSCAN1 Missense_Mutation p.R353W 0.72 deleterious(0.02) probably_damaging(0.924) TCGA-CV-5434-01 19 9959816 9959816 G A PIN1 Missense_Mutation p.E145K 0.31 deleterious(0.02) benign(0.367) TCGA-CV-5434-01 1 109794098 109794098 C T CELSR2 Missense_Mutation p.T466M 0.23 tolerated(0.3) benign(0.103) TCGA-CV-5434-01 1 11718615 11718615 G A FBXO44 Missense_Mutation p.D140N 0.78 tolerated(0.1) benign(0.003) TCGA-CV-5434-01 1 150255629 150255629 G T C1orf51 5'UTR 0.43 TCGA-CV-5434-01 1 158450008 158450008 T C OR10R2 Missense_Mutation p.F114S 0.54 deleterious(0.03) possibly_damaging(0.757) TCGA-CV-5434-01 1 158669969 158669969 C G OR6K2 Missense_Mutation p.E158D 0.19 tolerated(0.06) probably_damaging(0.992) TCGA-CV-5434-01 1 160011784 160011784 C T KCNJ10 Missense_Mutation p.R180H 0.45 tolerated(0.43) possibly_damaging(0.735) TCGA-CV-5434-01 1 161518384 161518384 C T FCGR3A Missense_Mutation p.G85E 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-5434-01 1 180399399 180399399 T A ACBD6 Splice_Site p.X129_splice 0.12 TCGA-CV-5434-01 1 197032145 197032145 G A F13B Missense_Mutation p.A36V 0.14 deleterious(0) probably_damaging(1) TCGA-CV-5434-01 1 203274687 203274687 C T BTG2 5'UTR 0.46 TCGA-CV-5434-01 1 205091119 205091119 G T RBBP5 5'UTR 0.23 TCGA-CV-5434-01 1 207105858 207105858 G A PIGR Silent p.L651L 0.42 TCGA-CV-5434-01 1 21585219 21585219 G C ECE1 Silent p.A243A 0.17 TCGA-CV-5434-01 1 216348641 216348641 T C USH2A Missense_Mutation p.Y1527C 0.15 probably_damaging(0.986) TCGA-CV-5434-01 1 29185555 29185555 G A OPRD1 Missense_Mutation p.S106N 0.73 deleterious(0.01) probably_damaging(0.965) TCGA-CV-5434-01 1 86590952 86590952 A C COL24A1 Missense_Mutation p.I356S 0.56 tolerated(0.42) benign(0) TCGA-CV-5434-01 20 31583478 31583478 T A SUN5 Missense_Mutation p.S161C 0.15 deleterious(0.03) possibly_damaging(0.711) TCGA-CV-5434-01 20 39832157 39832157 G A ZHX3 Missense_Mutation p.T467M 0.22 deleterious(0.02) possibly_damaging(0.587) TCGA-CV-5434-01 20 50400681 50400681 G A SALL4 3'UTR 0.36 TCGA-CV-5434-01 20 61512534 61512534 C T DIDO1 Missense_Mutation p.E1592K 0.45 benign(0.007) TCGA-CV-5434-01 21 45535281 45535281 G A PWP2 Splice_Site p.X202_splice 0.24 TCGA-CV-5434-01 21 47737166 47737166 C A C21orf58 Missense_Mutation p.R109L 0.50 deleterious(0) possibly_damaging(0.829) TCGA-CV-5434-01 22 41566521 41566521 G C EP300 Missense_Mutation p.W1466C 0.37 probably_damaging(1) TCGA-CV-5434-01 22 46654890 46654890 T C PKDREJ Missense_Mutation p.I1444V 0.23 deleterious(0.03) benign(0.181) TCGA-CV-5434-01 2 128238572 128238572 C A IWS1 3'UTR 0.19 TCGA-CV-5434-01 2 135911438 135911438 G A RAB3GAP1 Missense_Mutation p.A761T 0.12 deleterious(0) probably_damaging(0.998) TCGA-CV-5434-01 2 145187516 145187516 C T ZEB2 Missense_Mutation p.G51S 0.13 tolerated(0.95) benign(0) TCGA-CV-5434-01 2 182783567 182783567 G A SSFA2 Missense_Mutation p.R984H 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-CV-5434-01 2 231379989 231379990 - A SP100 Intron 0.44 TCGA-CV-5434-01 2 241706365 241706365 C T KIF1A Missense_Mutation p.V551I 0.33 tolerated(1) benign(0.001) TCGA-CV-5434-01 2 80530203 80530203 C T LRRTM1 Missense_Mutation p.V248M 0.24 tolerated(0.24) possibly_damaging(0.809) TCGA-CV-5434-01 2 95947688 95947688 G A PROM2 Missense_Mutation p.G523R 0.33 deleterious(0) probably_damaging(0.984) TCGA-CV-5434-01 2 96993685 96993685 C T ITPRIPL1 Missense_Mutation p.A447V 0.36 tolerated(0.24) benign(0.23) TCGA-CV-5434-01 3 101038496 101038496 A T IMPG2 Missense_Mutation p.V89E 0.69 deleterious(0) probably_damaging(0.991) TCGA-CV-5434-01 3 105456100 105456100 T C CBLB Missense_Mutation p.Y329C 0.65 deleterious(0) probably_damaging(1) TCGA-CV-5434-01 3 151150621 151150621 T A MED12L 3'UTR 0.42 TCGA-CV-5434-01 3 155199373 155199373 G T PLCH1 Missense_Mutation p.P1489H 0.19 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CV-5434-01 3 164906141 164906141 C A SLITRK3 Missense_Mutation p.Q826H 0.36 tolerated(0.13) possibly_damaging(0.694) TCGA-CV-5434-01 3 164906887 164906887 C T SLITRK3 Missense_Mutation p.E578K 0.08 deleterious(0) possibly_damaging(0.819) TCGA-CV-5434-01 3 168838896 168838896 C A MECOM Silent p.S237S 0.31 TCGA-CV-5434-01 3 4494724 4494724 T C SUMF1 Missense_Mutation p.I94V 0.31 tolerated(0.12) benign(0.213) TCGA-CV-5434-01 3 49689861 49689861 C T BSN Missense_Mutation p.R958W 0.75 unknown(0) TCGA-CV-5434-01 3 52383302 52383302 C G DNAH1 Missense_Mutation p.P798A 0.71 probably_damaging(1) TCGA-CV-5434-01 3 56667140 56667140 C T FAM208A Missense_Mutation p.V1227I 0.62 deleterious(0.02) probably_damaging(0.999) TCGA-CV-5434-01 4 130014244 130014244 G C SCLT1 Missense_Mutation p.I5M 0.67 tolerated(0.08) benign(0.377) TCGA-CV-5434-01 4 139103507 139103507 T C SLC7A11 Missense_Mutation p.I354V 0.62 tolerated(0.43) benign(0.019) TCGA-CV-5434-01 4 152212572 152212572 G C PRSS48 Missense_Mutation p.E318D 0.73 tolerated_low_confidence(0.65) benign(0.074) TCGA-CV-5434-01 4 187524462 187524462 C A FAT1 Nonsense_Mutation p.G3740* 0.71 TCGA-CV-5434-01 4 187524463 187524463 C A FAT1 Silent p.A3739A 0.71 TCGA-CV-5434-01 4 189022227 189022227 A G TRIML2 Missense_Mutation p.F105L 0.42 tolerated(0.67) benign(0.057) TCGA-CV-5434-01 4 47428009 47428009 G T GABRB1 Missense_Mutation p.V467F 0.62 tolerated(0.18) benign(0.249) TCGA-CV-5434-01 4 74719102 74719102 G A PF4V1 Missense_Mutation p.R8H 0.18 deleterious(0.01) unknown(0) TCGA-CV-5434-01 5 131915147 131915147 A G RAD50 Silent p.E168E 0.80 TCGA-CV-5434-01 5 140215594 140215594 G T PCDHA7 Silent p.V542V 0.41 TCGA-CV-5434-01 5 140580973 140580973 C T PCDHB11 Silent p.S542S 0.56 TCGA-CV-5434-01 5 66426148 66426148 G A MAST4 Missense_Mutation p.R619Q 0.50 probably_damaging(0.997) TCGA-CV-5434-01 6 100382303 100382303 C A MCHR2 Missense_Mutation p.E226D 0.20 tolerated(0.17) benign(0.019) TCGA-CV-5434-01 6 129637295 129637295 G A LAMA2 Missense_Mutation p.G1346E 0.50 deleterious(0) probably_damaging(1) TCGA-CV-5434-01 6 132910561 132910561 G A TAAR5 Missense_Mutation p.P89S 0.76 deleterious(0) probably_damaging(1) TCGA-CV-5434-01 6 1395022 1395022 C T FOXF2 Silent p.P421P 0.35 TCGA-CV-5434-01 6 31113227 31113227 C G CCHCR1 Missense_Mutation p.E579D 0.21 tolerated(0.14) possibly_damaging(0.803) TCGA-CV-5434-01 6 36993640 36993640 C T FGD2 Missense_Mutation p.L511F 0.84 tolerated(0.82) benign(0.004) TCGA-CV-5434-01 6 56997884 56997884 C T ZNF451 Nonsense_Mutation p.R157* 0.25 TCGA-CV-5434-01 6 80406206 80406206 A T SH3BGRL2 Missense_Mutation p.Y79F 0.67 tolerated(0.21) probably_damaging(0.956) TCGA-CV-5434-01 7 100285665 100285665 T G GIGYF1 Missense_Mutation p.K35T 0.21 deleterious(0) unknown(0) TCGA-CV-5434-01 7 108205290 108205290 G C THAP5 Missense_Mutation p.S178C 0.18 deleterious(0.04) benign(0.01) TCGA-CV-5434-01 7 122808429 122808429 T A SLC13A1 Missense_Mutation p.K220M 0.55 deleterious(0.04) benign(0.05) TCGA-CV-5434-01 7 141734603 141734603 C A MGAM Missense_Mutation p.P641T 0.50 tolerated(0.32) possibly_damaging(0.824) TCGA-CV-5434-01 7 1590490 1590490 G T TMEM184A Nonsense_Mutation p.Y116* 0.61 TCGA-CV-5434-01 7 22766989 22766989 G A IL6 Intron 0.57 TCGA-CV-5434-01 7 24705286 24705286 G A MPP6 Missense_Mutation p.R288K 0.52 tolerated(1) benign(0.004) TCGA-CV-5434-01 7 37780320 37780320 A G GPR141 Missense_Mutation p.I109V 0.21 deleterious(0.04) possibly_damaging(0.78) TCGA-CV-5434-01 7 78636417 78636417 C T MAGI2 Missense_Mutation p.R136H 0.60 tolerated(0.36) possibly_damaging(0.883) TCGA-CV-5434-01 7 8126118 8126118 G A GLCCI1 Missense_Mutation p.E532K 0.24 deleterious_low_confidence(0.01) benign(0.275) TCGA-CV-5434-01 7 92979233 92979233 T G CCDC132 Missense_Mutation p.V784G 0.14 deleterious(0) possibly_damaging(0.796) TCGA-CV-5434-01 7 92979234 92979234 A T CCDC132 Silent p.V784V 0.14 TCGA-CV-5434-01 7 95157520 95157520 G C ASB4 Missense_Mutation p.V295L 0.15 tolerated(0.05) probably_damaging(0.92) TCGA-CV-5434-01 7 96339200 96339200 G T SHFM1 5'UTR 0.84 TCGA-CV-5434-01 7 98446238 98446238 G T TMEM130 Silent p.R363R 0.64 TCGA-CV-5434-01 7 99258197 99258197 A G CYP3A5 Silent p.T317T 0.14 TCGA-CV-5434-01 8 134050694 134050694 C T SLA 3'UTR 0.18 TCGA-CV-5434-01 8 144697068 144697068 C A TSTA3 Missense_Mutation p.M93I 0.26 tolerated(1) benign(0.001) TCGA-CV-5434-01 8 144776666 144776666 G A ZNF707 Missense_Mutation p.R361Q 0.60 tolerated(0.38) probably_damaging(0.996) TCGA-CV-5434-01 8 59352288 59352288 G A UBXN2B Silent p.L210L 0.08 TCGA-CV-5434-01 8 68076024 68076024 C T CSPP1 Missense_Mutation p.R896C 0.26 deleterious(0) probably_damaging(0.949) TCGA-CV-5434-01 8 75276509 75276509 G A GDAP1 Silent p.L328L 0.29 TCGA-CV-5434-01 9 125316085 125316085 G A OR1N2 Missense_Mutation p.E213K 0.61 tolerated(0.06) benign(0.076) TCGA-CV-5434-01 9 125585430 125585430 C G PDCL Missense_Mutation p.E73D 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CV-5434-01 9 128092450 128092450 A G GAPVD1 Missense_Mutation p.E709G 0.24 deleterious(0) probably_damaging(0.98) TCGA-CV-5434-01 9 138376561 138376561 G A PPP1R26 Missense_Mutation p.A69T 0.50 tolerated(0.85) benign(0.091) TCGA-CV-5434-01 9 19063008 19063008 C G HAUS6 Missense_Mutation p.E543Q 0.22 tolerated(0.15) benign(0.199) TCGA-CV-5434-01 9 19063029 19063029 C G HAUS6 Missense_Mutation p.E536Q 0.26 tolerated(0.07) probably_damaging(0.96) TCGA-CV-5434-01 9 19063104 19063104 C T HAUS6 Missense_Mutation p.D511N 0.34 tolerated(0.4) benign(0.004) TCGA-CV-5434-01 9 19063775 19063775 C A HAUS6 Intron 0.35 TCGA-CV-5434-01 9 33943473 33943473 G T UBAP2 Missense_Mutation p.P554T 0.21 tolerated(0.09) benign(0.074) TCGA-CV-5434-01 9 73164503 73164503 C A TRPM3 Missense_Mutation p.R1209L 0.52 tolerated(0.07) probably_damaging(0.956) TCGA-CV-5434-01 X 101092763 101092763 T A NXF5 Nonsense_Mutation p.K304* 0.79 TCGA-CV-5434-01 X 101139651 101139651 A T ZMAT1 Missense_Mutation p.L250M 0.41 deleterious(0.05) benign(0.168) TCGA-CV-5434-01 X 107865911 107865911 G A COL4A5 Missense_Mutation p.D925N 0.35 unknown(0) TCGA-CV-5434-01 X 154294265 154294265 C T MTCP1 Silent p.G7G 0.37 TCGA-CV-5434-01 X 50051787 50051787 T A CCNB3 Missense_Mutation p.F206L 0.90 tolerated(0.34) benign(0.018) TCGA-CV-5435-01 10 122612036 122612036 G A WDR11 Nonsense_Mutation p.W29* 0.48 TCGA-CV-5435-01 10 27352931 27352931 T C ANKRD26 Missense_Mutation p.N450S 0.59 tolerated(0.19) benign(0.019) TCGA-CV-5435-01 10 29760123 29760123 T C SVIL Missense_Mutation p.Q1860R 0.20 tolerated(0.07) possibly_damaging(0.758) TCGA-CV-5435-01 10 43882508 43882508 T C HNRNPF Silent p.R275R 0.53 TCGA-CV-5435-01 10 81923102 81923102 C A ANXA11 Intron 0.32 TCGA-CV-5435-01 11 1016020 1016020 C T MUC6 Missense_Mutation p.A2261T 0.18 benign(0.021) TCGA-CV-5435-01 11 108253735 108253735 G A C11orf65 3'UTR 0.42 TCGA-CV-5435-01 11 118392924 118392924 G T KMT2A 3'UTR 0.54 TCGA-CV-5435-01 11 58125655 58125655 C A OR5B17 Missense_Mutation p.K296N 0.15 deleterious_low_confidence(0.05) benign(0.167) TCGA-CV-5435-01 11 61070101 61070101 G A DDB1 Missense_Mutation p.T1022I 0.44 tolerated(0.19) benign(0.003) TCGA-CV-5435-01 11 64033990 64033990 G C PLCB3 Missense_Mutation p.R1127P 0.13 tolerated(0.07) benign(0.202) TCGA-CV-5435-01 11 65273243 65273243 A G MALAT1 RNA 0.33 TCGA-CV-5435-01 12 11508453 11508453 G T PRB1 Missense_Mutation p.A12D 0.11 deleterious_low_confidence(0) unknown(0) TCGA-CV-5435-01 12 120139472 120139472 C T CIT Silent p.V1833V 0.19 TCGA-CV-5435-01 12 122862371 122862371 G C CLIP1 Missense_Mutation p.I74M 0.69 deleterious(0) probably_damaging(0.996) TCGA-CV-5435-01 12 124799005 124799005 C T FAM101A Silent p.T114T 0.22 TCGA-CV-5435-01 12 13717063 13717063 C T GRIN2B Missense_Mutation p.D1037N 0.63 tolerated(0.42) benign(0.055) TCGA-CV-5435-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.22 TCGA-CV-5435-01 12 42512903 42512903 C G GXYLT1 Missense_Mutation p.E129Q 0.16 deleterious(0.03) probably_damaging(0.951) TCGA-CV-5435-01 12 42864075 42864075 C A PRICKLE1 Missense_Mutation p.L73F 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-5435-01 12 71029580 71029580 A - PTPRB Frame_Shift_Del p.S108Lfs*11 0.34 TCGA-CV-5435-01 12 72416243 72416243 C A TPH2 Missense_Mutation p.A378E 0.22 deleterious(0) probably_damaging(1) TCGA-CV-5435-01 12 98987764 98987764 C G SLC25A3 Missense_Mutation p.S3W 0.28 deleterious_low_confidence(0.02) benign(0.026) TCGA-CV-5435-01 14 23450638 23450639 - C AJUBA Frame_Shift_Ins p.L280Afs*26 0.41 TCGA-CV-5435-01 14 63671683 63671683 G C RHOJ Silent p.V32V 0.46 TCGA-CV-5435-01 14 65208842 65208842 C T PLEKHG3 Silent p.S813S 0.51 TCGA-CV-5435-01 14 69256533 69256533 T A ZFP36L1 Missense_Mutation p.D245V 0.42 tolerated(0.13) possibly_damaging(0.515) TCGA-CV-5435-01 14 74440651 74440651 C T ENTPD5 Missense_Mutation p.C272Y 0.21 deleterious(0) probably_damaging(1) TCGA-CV-5435-01 14 76286467 76286467 C G TTLL5 Missense_Mutation p.Q1097E 0.28 tolerated(0.11) benign(0.027) TCGA-CV-5435-01 14 94158111 94158111 T C UNC79 Missense_Mutation p.M2292T 0.11 deleterious(0) benign(0.123) TCGA-CV-5435-01 15 25325297 25325297 G A SNORD116-14 RNA 0.50 TCGA-CV-5435-01 15 28326955 28326955 C T OCA2 Silent p.T22T 0.63 TCGA-CV-5435-01 15 39884807 39884807 C G THBS1 Missense_Mutation p.D857E 0.40 deleterious(0.02) probably_damaging(0.966) TCGA-CV-5435-01 15 55652269 55652310 CACTAAAAACTGTTCTTGGTTTTTCAGCTGCTTCTTTTGTAG - CCPG1 In_Frame_Del p.A554_S567del 0.20 TCGA-CV-5435-01 15 65491100 65491100 G A CILP Silent p.G508G 0.10 TCGA-CV-5435-01 15 79092702 79092702 G A ADAMTS7 Silent p.T96T 0.36 TCGA-CV-5435-01 15 79294032 79294032 G T RASGRF1 Silent p.P865P 0.20 TCGA-CV-5435-01 16 19871833 19871833 G A GPRC5B Missense_Mutation p.H401Y 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-CV-5435-01 16 46716023 46716023 G A VPS35 Missense_Mutation p.S56F 0.35 deleterious(0) possibly_damaging(0.9) TCGA-CV-5435-01 16 4815844 4815844 G C ZNF500 Missense_Mutation p.P46A 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-CV-5435-01 17 11660996 11660996 A G DNAH9 Missense_Mutation p.T2328A 0.55 benign(0.001) TCGA-CV-5435-01 17 27031231 27031231 C T PROCA1 Splice_Site p.X119_splice 0.19 TCGA-CV-5435-01 17 29162894 29162894 A C ATAD5 Silent p.R599R 0.21 TCGA-CV-5435-01 17 37369370 37369370 G T STAC2 Silent p.R337R 0.46 TCGA-CV-5435-01 17 44845973 44845973 C G WNT3 Missense_Mutation p.A261P 0.45 tolerated(1) benign(0.001) TCGA-CV-5435-01 17 48273527 48273527 C T COL1A1 Missense_Mutation p.A331T 0.35 unknown(0) TCGA-CV-5435-01 17 4937602 4937602 C A SLC52A1 Missense_Mutation p.G61V 0.37 deleterious(0) probably_damaging(0.977) TCGA-CV-5435-01 17 60087936 60087936 G T MED13 Missense_Mutation p.Q648K 0.17 tolerated(0.9) benign(0.001) TCGA-CV-5435-01 17 61958159 61958159 T C GH2 Silent p.L143L 0.35 TCGA-CV-5435-01 17 63898393 63898393 G A CEP112 Silent p.N680N 0.39 TCGA-CV-5435-01 17 66265473 66265473 G A SLC16A6 Nonsense_Mutation p.Q446* 0.25 TCGA-CV-5435-01 17 66538936 66538936 C T FAM20A Missense_Mutation p.R276Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-5435-01 17 73915827 73915827 G A FBF1 Missense_Mutation p.T672M 0.07 tolerated(0.1) possibly_damaging(0.681) TCGA-CV-5435-01 17 7579415 7579415 C T TP53 Nonsense_Mutation p.W91* 0.82 TCGA-CV-5435-01 17 76089205 76089205 G C TNRC6C Missense_Mutation p.E1385Q 0.43 deleterious(0) possibly_damaging(0.908) TCGA-CV-5435-01 17 78351573 78351573 G A RNF213 Missense_Mutation p.G4508S 0.38 probably_damaging(1) TCGA-CV-5435-01 18 29848299 29848299 G A GAREM Silent p.C722C 0.16 TCGA-CV-5435-01 18 46385964 46385964 G T CTIF 3'UTR 0.32 TCGA-CV-5435-01 18 63547907 63547907 G - CDH7 Frame_Shift_Del p.E713Kfs*3 0.32 TCGA-CV-5435-01 18 9944946 9944946 C T VAPA Missense_Mutation p.P148L 0.34 tolerated(0.4) benign(0.001) TCGA-CV-5435-01 19 19655287 19655287 G A CILP2 Missense_Mutation p.V645M 0.36 tolerated(0.21) probably_damaging(0.999) TCGA-CV-5435-01 19 21365730 21365730 A G ZNF431 Silent p.K208K 0.27 TCGA-CV-5435-01 19 31039034 31039034 C A ZNF536 Missense_Mutation p.D836E 0.32 tolerated(0.17) benign(0.024) TCGA-CV-5435-01 19 44471539 44471539 G A ZNF221 3'UTR 0.36 TCGA-CV-5435-01 19 49249188 49249188 C T IZUMO1 Intron 0.36 TCGA-CV-5435-01 19 52148741 52148741 C A SIGLEC14 Missense_Mutation p.G248V 0.22 tolerated(0.08) benign(0.199) TCGA-CV-5435-01 19 52941671 52941671 C A ZNF534 Missense_Mutation p.H333N 0.50 deleterious(0) probably_damaging(0.925) TCGA-CV-5435-01 1 102269859 102269859 T C OLFM3 Missense_Mutation p.N438D 0.62 deleterious(0.02) probably_damaging(0.995) TCGA-CV-5435-01 1 114964164 114964164 T A TRIM33 Missense_Mutation p.N652I 0.44 tolerated(0.44) benign(0.025) TCGA-CV-5435-01 1 152283935 152283935 C A FLG Nonsense_Mutation p.G1143* 0.04 TCGA-CV-5435-01 1 154562371 154562371 T C ADAR Missense_Mutation p.I844V 0.58 tolerated(0.18) benign(0.208) TCGA-CV-5435-01 1 16902841 16902841 C A NBPF1 Missense_Mutation p.K680N 0.03 tolerated(0.6) benign(0.076) TCGA-CV-5435-01 1 177909817 177909817 C T SEC16B Silent p.L685L 0.21 TCGA-CV-5435-01 1 18691843 18691843 A C IGSF21 Missense_Mutation p.T223P 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-CV-5435-01 1 196684815 196684815 G T CFH Missense_Mutation p.D538Y 0.19 tolerated(0.11) possibly_damaging(0.681) TCGA-CV-5435-01 1 197111716 197111716 T C ASPM Missense_Mutation p.K556E 0.44 tolerated(0.09) benign(0.055) TCGA-CV-5435-01 1 205038984 205038984 C T CNTN2 Silent p.D742D 0.37 TCGA-CV-5435-01 1 207242833 207242833 G A PFKFB2 Missense_Mutation p.R351Q 0.17 probably_damaging(1) TCGA-CV-5435-01 1 213414710 213414710 C G RPS6KC1 Missense_Mutation p.P631A 0.36 tolerated(0.11) benign(0.008) TCGA-CV-5435-01 1 244217113 244217113 C G ZBTB18 Missense_Mutation p.P13A 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-5435-01 1 248004560 248004560 C A OR11L1 Silent p.L213L 0.43 TCGA-CV-5435-01 1 248436609 248436609 G T OR2T33 Missense_Mutation p.H170N 0.12 deleterious(0.03) benign(0.012) TCGA-CV-5435-01 1 34204867 34204867 G C CSMD2 Missense_Mutation p.Q708E 0.24 tolerated(0.1) possibly_damaging(0.696) TCGA-CV-5435-01 1 39833905 39833905 C T MACF1 Missense_Mutation p.A2224V 0.40 benign(0.005) TCGA-CV-5435-01 1 47515807 47515807 T G CYP4X1 Missense_Mutation p.N497K 0.13 deleterious(0.01) benign(0.175) TCGA-CV-5435-01 1 63879791 63879791 G T ALG6 Missense_Mutation p.L292F 0.29 tolerated(0.73) benign(0.026) TCGA-CV-5435-01 1 99772407 99772407 C T LPPR4 Silent p.S711S 0.18 TCGA-CV-5435-01 20 10639359 10639359 T C JAG1 Missense_Mutation p.I151V 0.17 tolerated(0.08) benign(0.002) TCGA-CV-5435-01 21 38308946 38308946 C T HLCS Missense_Mutation p.V267I 0.28 tolerated(0.24) benign(0.266) TCGA-CV-5435-01 22 25598707 25598707 C A CRYBB3 Missense_Mutation p.L48M 0.35 deleterious(0) probably_damaging(0.967) TCGA-CV-5435-01 22 37603421 37603421 C T SSTR3 Missense_Mutation p.R141H 0.46 deleterious(0) probably_damaging(1) TCGA-CV-5435-01 22 50987418 50987418 C T KLHDC7B Missense_Mutation p.R275W 0.62 deleterious(0) probably_damaging(1) TCGA-CV-5435-01 2 179309173 179309173 C T PRKRA Silent p.Q124Q 0.48 TCGA-CV-5435-01 2 179430729 179430729 A G TTN Silent p.D26710D 0.19 TCGA-CV-5435-01 2 201798644 201798644 G C ORC2 Silent p.T254T 0.08 TCGA-CV-5435-01 2 201943659 201943659 T G NDUFB3 Missense_Mutation p.D18E 0.07 deleterious(0) possibly_damaging(0.633) TCGA-CV-5435-01 2 220115525 220115525 G A TUBA4A Missense_Mutation p.A299V 0.17 deleterious_low_confidence(0.04) benign(0.003) TCGA-CV-5435-01 2 225400286 225400286 G A CUL3 Nonsense_Mutation p.Q113* 0.67 TCGA-CV-5435-01 2 233660784 233660784 A G GIGYF2 Missense_Mutation p.M519V 0.17 benign(0.183) TCGA-CV-5435-01 2 27804812 27804812 C T C2orf16 Silent p.H1791H 0.14 TCGA-CV-5435-01 2 70901925 70901925 G A ADD2 Silent p.D542D 0.62 TCGA-CV-5435-01 2 73470213 73470213 C T CCT7 Missense_Mutation p.H117Y 0.07 deleterious(0.01) possibly_damaging(0.653) TCGA-CV-5435-01 2 74274034 74274049 GATCTCTCCCCAAGAG - TET3 Frame_Shift_Del p.I196Afs*9 0.59 TCGA-CV-5435-01 2 74689333 74689333 G T MOGS Missense_Mutation p.P528H 0.21 tolerated(0.06) possibly_damaging(0.841) TCGA-CV-5435-01 2 97860475 97860475 A G ANKRD36 Missense_Mutation p.K821R 0.47 tolerated_low_confidence(0.06) possibly_damaging(0.678) TCGA-CV-5435-01 3 126071260 126071260 G A KLF15 Missense_Mutation p.A169V 0.51 tolerated(0.48) benign(0.126) TCGA-CV-5435-01 3 130743569 130743570 - G ASTE1 Frame_Shift_Ins p.A195Cfs*7 0.25 TCGA-CV-5435-01 3 139094375 139094375 C T COPB2 Missense_Mutation p.G196S 0.53 tolerated(0.08) possibly_damaging(0.654) TCGA-CV-5435-01 3 155199435 155199435 C A PLCH1 Missense_Mutation p.M1468I 0.10 tolerated_low_confidence(0.3) benign(0.001) TCGA-CV-5435-01 3 173998976 173998976 C T NLGN1 Silent p.P785P 0.17 TCGA-CV-5435-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.53 deleterious(0.02) probably_damaging(0.959) TCGA-CV-5435-01 3 179306510 179306510 A T MRPL47 3'UTR 0.30 TCGA-CV-5435-01 3 194790786 194790786 C T XXYLT1 Silent p.P280P 0.18 TCGA-CV-5435-01 3 196865135 196865135 A C DLG1 Missense_Mutation p.S314A 0.60 tolerated(0.56) benign(0.005) TCGA-CV-5435-01 3 47680266 47680266 T C SMARCC1 Silent p.G775G 0.67 TCGA-CV-5435-01 3 71804252 71804252 C T GPR27 Missense_Mutation p.A351V 0.64 deleterious(0.01) possibly_damaging(0.477) TCGA-CV-5435-01 3 98002139 98002139 A G OR5H2 Silent p.L136L 0.23 TCGA-CV-5435-01 4 134072873 134072873 C T PCDH10 Silent p.Y526Y 0.26 TCGA-CV-5435-01 4 178897080 178897081 - T LINC01098 Frame_Shift_Ins p.S97Ffs*2 0.26 TCGA-CV-5435-01 4 48096214 48096214 C A TXK Nonsense_Mutation p.E197* 0.12 TCGA-CV-5435-01 4 48096215 48096215 C A TXK Silent p.T196T 0.12 TCGA-CV-5435-01 4 53470719 53470719 C T USP46 Missense_Mutation p.E224K 0.59 tolerated(0.31) benign(0.088) TCGA-CV-5435-01 4 69796456 69796456 G C UGT2A3 Missense_Mutation p.T371S 0.71 deleterious(0) probably_damaging(1) TCGA-CV-5435-01 5 131755552 131755552 A C C5orf56 5'UTR 0.75 TCGA-CV-5435-01 5 145379827 145379827 C G SH3RF2 Silent p.L195L 0.56 TCGA-CV-5435-01 5 150924395 150924395 T C FAT2 Missense_Mutation p.D2098G 0.73 probably_damaging(1) TCGA-CV-5435-01 5 40777689 40777689 C G PRKAA1 Splice_Site p.X43_splice 0.73 TCGA-CV-5435-01 6 46661854 46661854 G T TDRD6 Nonsense_Mutation p.E1997* 0.08 TCGA-CV-5435-01 7 104808499 104808499 G A SRPK2 Missense_Mutation p.H128Y 0.34 deleterious(0) probably_damaging(0.967) TCGA-CV-5435-01 7 142364532 142364532 A G TRBV24-1 Missense_Mutation p.Q56R 0.28 deleterious(0.01) probably_damaging(0.923) TCGA-CV-5435-01 7 149480698 149480698 T C SSPO RNA 0.31 TCGA-CV-5435-01 7 154684290 154684290 C A DPP6 3'UTR 0.58 TCGA-CV-5435-01 7 154767472 154767472 C T PAXIP1 Silent p.R336R 0.54 TCGA-CV-5435-01 7 42949873 42949873 C G C7orf25 Missense_Mutation p.E267D 0.53 tolerated(0.72) benign(0.004) TCGA-CV-5435-01 7 92762231 92762231 C A SAMD9L Missense_Mutation p.E1018D 0.28 tolerated(0.13) possibly_damaging(0.686) TCGA-CV-5435-01 7 93106945 93106945 A G CALCR Missense_Mutation p.C99R 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-5435-01 7 99917380 99917380 C A SPDYE3 Missense_Mutation p.F513L 0.32 tolerated(0.21) benign(0.307) TCGA-CV-5435-01 8 133858165 133858165 A G PHF20L1 Silent p.V1017V 0.61 TCGA-CV-5435-01 8 2820154 2820154 G A CSMD1 Silent p.F3154F 0.17 TCGA-CV-5435-01 8 66691976 66691976 T C PDE7A Missense_Mutation p.I88V 0.12 tolerated(0.14) benign(0.029) TCGA-CV-5435-01 8 6679525 6679525 C T XKR5 RNA 0.25 TCGA-CV-5435-01 8 67576729 67576729 G C VCPIP1 Missense_Mutation p.P822R 0.17 deleterious(0) probably_damaging(1) TCGA-CV-5435-01 9 101552737 101552737 C A ANKS6 Missense_Mutation p.D171Y 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-CV-5435-01 9 101552738 101552738 C A ANKS6 Silent p.V170V 0.42 TCGA-CV-5435-01 9 116038996 116038996 A G PRPF4 Missense_Mutation p.I67V 0.46 tolerated(0.2) benign(0.004) TCGA-CV-5435-01 9 13147652 13147652 A T MPDZ Missense_Mutation p.D1212E 0.53 deleterious(0.01) possibly_damaging(0.906) TCGA-CV-5435-01 X 103495254 103495254 C T ESX1 Silent p.A292A 0.41 TCGA-CV-5435-01 X 151869581 151869581 G A MAGEA6 Missense_Mutation p.E91K 0.31 tolerated(0.16) possibly_damaging(0.811) TCGA-CV-5435-01 X 92965205 92965205 C T FAM133A 3'UTR 0.19 TCGA-CV-5436-01 10 18629869 18629869 G A CACNB2 Intron 0.29 TCGA-CV-5436-01 10 37508487 37508487 C T ANKRD30A Missense_Mutation p.H1227Y 0.27 deleterious(0.04) benign(0.403) TCGA-CV-5436-01 10 468941 468941 C A DIP2C Missense_Mutation p.V143L 0.31 tolerated(1) benign(0) TCGA-CV-5436-01 10 95436422 95436422 C T FRA10AC1 Missense_Mutation p.D272N 0.39 tolerated(0.14) benign(0) TCGA-CV-5436-01 10 97174295 97174295 G A SORBS1 Missense_Mutation p.R256C 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-CV-5436-01 11 118888677 118888677 G A RPS25 Silent p.A30A 0.32 TCGA-CV-5436-01 11 13438772 13438772 C T BTBD10 Missense_Mutation p.R207Q 0.35 tolerated(0.07) possibly_damaging(0.875) TCGA-CV-5436-01 11 14901976 14901976 C T CYP2R1 Missense_Mutation p.G236S 0.26 tolerated(0.42) possibly_damaging(0.895) TCGA-CV-5436-01 11 46681003 46681003 A G ATG13 Missense_Mutation p.T253A 0.32 tolerated(0.15) benign(0.002) TCGA-CV-5436-01 11 5529987 5529987 C T UBQLN3 Missense_Mutation p.A268T 0.34 deleterious(0) possibly_damaging(0.852) TCGA-CV-5436-01 11 55579760 55579760 T G OR5L1 Missense_Mutation p.V273G 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-CV-5436-01 11 65304218 65304218 G A SCYL1 Missense_Mutation p.E605K 0.28 tolerated(0.79) benign(0.334) TCGA-CV-5436-01 11 84028169 84028213 TTGGTGAGGTATGCATTCATACTGCACTGATGCCTACTCTTTCCT - DLG2 Intron 0.34 TCGA-CV-5436-01 11 95591793 95591793 T C MTMR2 Missense_Mutation p.I158V 0.36 deleterious(0.01) benign(0.001) TCGA-CV-5436-01 12 14946725 14946725 C T WBP11 Missense_Mutation p.G285R 0.33 tolerated_low_confidence(0.32) unknown(0) TCGA-CV-5436-01 12 29423364 29423364 T A FAR2 5'UTR 0.31 TCGA-CV-5436-01 12 32480416 32480416 C T BICD1 Missense_Mutation p.L343F 0.29 deleterious(0) probably_damaging(1) TCGA-CV-5436-01 12 49428450 49428450 C G KMT2D Splice_Site p.X3452_splice 0.21 TCGA-CV-5436-01 12 56222003 56222003 T A DNAJC14 Missense_Mutation p.N147I 0.36 deleterious_low_confidence(0) benign(0.165) TCGA-CV-5436-01 12 56712923 56712923 T C PAN2 Missense_Mutation p.M1109V 0.32 deleterious(0.01) benign(0.009) TCGA-CV-5436-01 13 114112358 114112358 G A DCUN1D2 Missense_Mutation p.R256C 0.06 deleterious(0.02) benign(0.339) TCGA-CV-5436-01 13 36700037 36700037 G A DCLK1 Missense_Mutation p.R80W 0.24 deleterious(0) unknown(0) TCGA-CV-5436-01 13 45768678 45768678 C G KCTD4 Missense_Mutation p.E9Q 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-CV-5436-01 13 46721156 46721156 T A LCP1 Missense_Mutation p.D354V 0.27 deleterious(0) probably_damaging(1) TCGA-CV-5436-01 14 20825824 20825825 - GCG PARP2 In_Frame_Ins p.A541dup 0.32 TCGA-CV-5436-01 14 24045205 24045205 C G JPH4 Missense_Mutation p.E280D 0.20 deleterious(0.02) probably_damaging(0.935) TCGA-CV-5436-01 15 43027800 43027800 C T CDAN1 Missense_Mutation p.G284E 0.65 tolerated(0.18) benign(0.011) TCGA-CV-5436-01 15 44143363 44143363 G A WDR76 Missense_Mutation p.A371T 0.04 tolerated(0.56) benign(0.009) TCGA-CV-5436-01 15 49059304 49059304 A G CEP152 Silent p.L745L 0.63 TCGA-CV-5436-01 16 1894871 1894871 G C MEIOB Missense_Mutation p.S291C 0.56 deleterious(0.01) possibly_damaging(0.882) TCGA-CV-5436-01 16 2086358 2086358 C T SLC9A3R2 Missense_Mutation p.R150W 0.45 deleterious(0) probably_damaging(1) TCGA-CV-5436-01 16 31391868 31391868 G T ITGAX Missense_Mutation p.V1067L 0.49 tolerated(0.13) benign(0.002) TCGA-CV-5436-01 16 54967589 54967589 G A IRX5 Missense_Mutation p.G419E 0.20 deleterious(0.01) unknown(0) TCGA-CV-5436-01 16 58557303 58557303 A T CNOT1 Missense_Mutation p.N2296K 0.17 deleterious(0.02) benign(0.188) TCGA-CV-5436-01 16 68849489 68849489 C T CDH1 Silent p.V464V 0.50 TCGA-CV-5436-01 16 70722052 70722052 C T VAC14 Intron 0.42 TCGA-CV-5436-01 17 3195526 3195526 C T OR3A1 Silent p.L117L 0.30 TCGA-CV-5436-01 17 45291173 45291173 C T MYL4 Silent p.F48F 0.37 TCGA-CV-5436-01 17 48356767 48356767 A C TMEM92 3'UTR 0.25 TCGA-CV-5436-01 17 5085039 5085039 G A ZNF594 3'UTR 0.31 TCGA-CV-5436-01 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-5436-01 17 7579521 7579521 C A TP53 Nonsense_Mutation p.E56* 0.30 TCGA-CV-5436-01 17 76464798 76464798 G A DNAH17 Silent p.I2879I 0.31 TCGA-CV-5436-01 18 76754297 76754297 C T SALL3 Missense_Mutation p.T769M 0.40 deleterious(0) probably_damaging(0.962) TCGA-CV-5436-01 19 10655726 10655726 C G ATG4D Missense_Mutation p.S138W 0.06 deleterious(0) possibly_damaging(0.841) TCGA-CV-5436-01 19 17088291 17088291 C T CPAMD8 Missense_Mutation p.V596M 0.37 deleterious(0) probably_damaging(0.958) TCGA-CV-5436-01 19 58850657 58850657 G A ZSCAN22 Missense_Mutation p.V481I 0.39 tolerated(0.24) benign(0.001) TCGA-CV-5436-01 19 8435950 8435950 G C ANGPTL4 Missense_Mutation p.W224C 0.36 deleterious(0) probably_damaging(1) TCGA-CV-5436-01 1 110294291 110294291 G A EPS8L3 Silent p.G517G 0.42 TCGA-CV-5436-01 1 152277201 152277201 G A FLG Silent p.L3387L 0.34 TCGA-CV-5436-01 1 153905961 153905961 C T DENND4B Missense_Mutation p.E1110K 0.34 tolerated(0.09) probably_damaging(0.981) TCGA-CV-5436-01 1 153906274 153906274 C G DENND4B Silent p.L1005L 0.45 TCGA-CV-5436-01 1 179414261 179414261 C G AXDND1 Missense_Mutation p.R574G 0.34 tolerated(0.29) benign(0.004) TCGA-CV-5436-01 1 180155269 180155269 A G QSOX1 Silent p.E323E 0.29 TCGA-CV-5436-01 1 18962744 18962744 G A PAX7 Silent p.S155S 0.32 TCGA-CV-5436-01 1 201965306 201965306 G C RNPEP Missense_Mutation p.D257H 0.34 deleterious(0.04) benign(0.033) TCGA-CV-5436-01 1 215777507 215777507 G A KCTD3 Missense_Mutation p.G391D 0.28 deleterious(0) probably_damaging(1) TCGA-CV-5436-01 1 222717416 222717416 G A HHIPL2 Missense_Mutation p.S146L 0.33 tolerated(0.19) possibly_damaging(0.826) TCGA-CV-5436-01 1 38181550 38181550 G A EPHA10 3'Flank 0.32 TCGA-CV-5436-01 1 43885835 43885835 C T SZT2 Missense_Mutation p.R368C 0.05 deleterious(0.01) probably_damaging(0.983) TCGA-CV-5436-01 1 43907942 43907942 C G SZT2 Missense_Mutation p.A2569G 0.22 tolerated(0.4) possibly_damaging(0.581) TCGA-CV-5436-01 1 54684016 54684016 C TG MRPL37 3'UTR 0.26 TCGA-CV-5436-01 20 30432595 30432595 G A FOXS1 Missense_Mutation p.R251W 0.23 deleterious(0) probably_damaging(0.993) TCGA-CV-5436-01 20 47630398 47630398 G C ARFGEF2 Missense_Mutation p.K1360N 0.21 deleterious(0) probably_damaging(0.943) TCGA-CV-5436-01 22 23438215 23438215 G - GNAZ Frame_Shift_Del p.G112Afs*46 0.33 TCGA-CV-5436-01 22 25016313 25016313 T A GGT1 Missense_Mutation p.V134E 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-5436-01 22 31534395 31534395 A G PLA2G3 Missense_Mutation p.F217L 0.17 deleterious(0) probably_damaging(1) TCGA-CV-5436-01 22 37491963 37491963 T C TMPRSS6 Missense_Mutation p.E200G 0.29 tolerated(0.26) benign(0.002) TCGA-CV-5436-01 2 152135384 152135384 T C NMI Missense_Mutation p.I100V 0.27 deleterious(0.01) benign(0.002) TCGA-CV-5436-01 2 179501212 179501212 C G TTN Missense_Mutation p.V13748L 0.15 TCGA-CV-5436-01 2 179597359 179597359 T C TTN Missense_Mutation p.T5477A 0.25 TCGA-CV-5436-01 2 182400388 182400388 T C ITGA4 3'UTR 0.27 TCGA-CV-5436-01 2 203745631 203745631 T C WDR12 Silent p.K408K 0.55 TCGA-CV-5436-01 2 21233522 21233522 A G APOB Missense_Mutation p.F2073S 0.35 probably_damaging(0.994) TCGA-CV-5436-01 2 225662626 225662626 T A DOCK10 Missense_Mutation p.M1523L 0.46 tolerated(1) benign(0) TCGA-CV-5436-01 2 235951774 235951774 C A SH3BP4 Nonsense_Mutation p.C787* 0.46 TCGA-CV-5436-01 2 66739354 66739354 T C MEIS1 Silent p.R272R 0.53 TCGA-CV-5436-01 2 95713749 95713749 C T MAL Missense_Mutation p.P47S 0.29 tolerated(0.1) probably_damaging(0.911) TCGA-CV-5436-01 2 98355850 98355850 C A ZAP70 Silent p.R583R 0.31 TCGA-CV-5436-01 3 121207907 121207907 G C POLQ Missense_Mutation p.L1291V 0.24 tolerated_low_confidence(1) benign(0) TCGA-CV-5436-01 3 122645415 122645415 G A SEMA5B Silent p.R374R 0.24 TCGA-CV-5436-01 3 130454754 130454754 G C PIK3R4 Missense_Mutation p.Q276E 0.19 deleterious(0.05) benign(0.03) TCGA-CV-5436-01 3 150903227 150903227 G A MED12L Silent p.R535R 0.27 TCGA-CV-5436-01 3 15616518 15616518 G A HACL1 Missense_Mutation p.P292L 0.49 deleterious(0) probably_damaging(0.976) TCGA-CV-5436-01 3 187089105 187089106 TG - RTP4 Frame_Shift_Del p.V230Lfs*32 0.36 TCGA-CV-5436-01 4 123140523 123140523 A G KIAA1109 Missense_Mutation p.Y759C 0.25 probably_damaging(0.998) TCGA-CV-5436-01 4 153601078 153601078 G A TMEM154 Missense_Mutation p.A3V 0.26 tolerated(0.07) possibly_damaging(0.866) TCGA-CV-5436-01 4 178911818 178911818 G A LINC01098 3'UTR 0.20 TCGA-CV-5436-01 4 71227862 71227862 T G SMR3A Silent p.L10L 0.23 TCGA-CV-5436-01 4 74702557 74702557 G A CXCL6 Silent p.P30P 0.05 TCGA-CV-5436-01 4 98480263 98480263 G T STPG2 Silent p.S442S 0.46 TCGA-CV-5436-01 5 10433762 10433762 C T MARCH6 Missense_Mutation p.S900L 0.30 tolerated(0.1) unknown(0) TCGA-CV-5436-01 5 11397249 11397249 G A CTNND2 Missense_Mutation p.P169L 0.37 tolerated(0.07) benign(0.03) TCGA-CV-5436-01 5 128365282 128365282 G C SLC27A6 Missense_Mutation p.R522T 0.27 deleterious(0.01) benign(0.023) TCGA-CV-5436-01 5 136448238 136448238 C T SPOCK1 Silent p.G120G 0.23 TCGA-CV-5436-01 6 107955178 107955178 G A SOBP Missense_Mutation p.G377D 0.31 deleterious(0) probably_damaging(0.989) TCGA-CV-5436-01 6 111912597 111912597 G A TRAF3IP2 Silent p.L231L 0.37 TCGA-CV-5436-01 6 144779962 144779962 A C UTRN Missense_Mutation p.K781Q 0.26 tolerated(0.39) benign(0.028) TCGA-CV-5436-01 6 27420364 27420364 T C ZNF184 Missense_Mutation p.Q325R 0.43 deleterious(0.04) benign(0.354) TCGA-CV-5436-01 6 28264676 28264676 C G PGBD1 Silent p.L242L 0.05 TCGA-CV-5436-01 6 4892155 4892155 A T CDYL Missense_Mutation p.N78I 0.47 deleterious(0.03) possibly_damaging(0.676) TCGA-CV-5436-01 6 66204885 66204885 C A EYS Missense_Mutation p.W140L 0.33 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-CV-5436-01 6 86328538 86328538 T C SYNCRIP Silent p.Q426Q 0.27 TCGA-CV-5436-01 6 93956564 93956564 T A EPHA7 Missense_Mutation p.D891V 0.28 deleterious(0) benign(0.207) TCGA-CV-5436-01 6 93956565 93956565 C A EPHA7 Missense_Mutation p.D891Y 0.28 deleterious(0) possibly_damaging(0.683) TCGA-CV-5436-01 6 96651080 96651080 A G FUT9 Missense_Mutation p.I17V 0.35 tolerated(0.82) benign(0.02) TCGA-CV-5436-01 7 102982244 102982244 G A DNAJC2 Silent p.P74P 0.32 TCGA-CV-5436-01 7 111503408 111503408 C T DOCK4 Intron 0.26 TCGA-CV-5436-01 7 15601453 15601453 G T AGMO Silent p.A6A 0.18 TCGA-CV-5436-01 7 15601590 15601590 A T AGMO 5'UTR 0.18 TCGA-CV-5436-01 7 35242348 35242348 G C TBX20 Silent p.L346L 0.12 TCGA-CV-5436-01 7 38289117 38289117 C A TRGC2 Missense_Mutation p.A20S 0.38 tolerated(0.1) possibly_damaging(0.603) TCGA-CV-5436-01 7 38431514 38431514 G A AMPH Silent p.D571D 0.17 TCGA-CV-5436-01 7 6077129 6077129 T C EIF2AK1 Missense_Mutation p.T420A 0.25 tolerated(0.13) benign(0.155) TCGA-CV-5436-01 7 63726517 63726517 C T ZNF679 Missense_Mutation p.S169L 0.35 tolerated(0.16) benign(0.003) TCGA-CV-5436-01 7 73118115 73118115 C G STX1A Missense_Mutation p.E170D 0.37 deleterious(0.02) benign(0) TCGA-CV-5436-01 7 95019514 95019514 G C PON3 Silent p.G51G 0.31 TCGA-CV-5436-01 8 108972911 108972911 C T RSPO2 Missense_Mutation p.E140K 0.12 deleterious(0) benign(0.329) TCGA-CV-5436-01 8 139606419 139606419 G A COL22A1 Nonsense_Mutation p.Q1486* 0.56 TCGA-CV-5436-01 8 145223234 145223234 A G MROH1 Missense_Mutation p.K20R 0.47 tolerated(0.11) benign(0.071) TCGA-CV-5436-01 8 16032716 16032716 G T MSR1 Missense_Mutation p.P66H 0.28 deleterious(0.01) probably_damaging(1) TCGA-CV-5436-01 8 48845609 48845609 G C PRKDC Missense_Mutation p.L583V 0.21 benign(0.013) TCGA-CV-5436-01 8 55537622 55537622 A G RP1 Missense_Mutation p.M394V 0.21 deleterious(0.01) benign(0.005) TCGA-CV-5436-01 9 135975451 135975451 C T RALGDS Intron 0.67 TCGA-CV-5436-01 9 139412212 139412212 C T NOTCH1 Missense_Mutation p.C478Y 0.78 deleterious(0) probably_damaging(1) TCGA-CV-5436-01 9 139905635 139905635 C A ABCA2 Intron 0.19 TCGA-CV-5436-01 9 139905642 139905642 C T ABCA2 Silent p.K1973K 0.20 TCGA-CV-5436-01 9 96437264 96437264 G C PHF2 Missense_Mutation p.K894N 0.16 deleterious(0.04) unknown(0) TCGA-CV-5439-01 10 117704304 117704304 C T ATRNL1 3'UTR 0.32 TCGA-CV-5439-01 10 24873384 24873384 G A ARHGAP21 Missense_Mutation p.S1945F 0.30 deleterious(0) possibly_damaging(0.674) TCGA-CV-5439-01 10 24955940 24955940 T A ARHGAP21 Splice_Site p.X82_splice 0.19 TCGA-CV-5439-01 10 29834018 29834018 C T SVIL Intron 0.21 TCGA-CV-5439-01 10 49393603 49393603 A G FRMPD2 Silent p.R784R 0.33 TCGA-CV-5439-01 10 50819677 50819677 G - SLC18A3 Frame_Shift_Del p.L298Sfs*19 0.24 TCGA-CV-5439-01 10 71899604 71899604 G T TYSND1 3'UTR 0.35 TCGA-CV-5439-01 10 75335341 75335341 A T USP54 Missense_Mutation p.S26T 0.36 deleterious(0.02) probably_damaging(0.986) TCGA-CV-5439-01 11 105923992 105923992 C A KBTBD3 Missense_Mutation p.C475F 0.29 deleterious(0) probably_damaging(0.957) TCGA-CV-5439-01 11 113711431 113711431 G A USP28 Silent p.R141R 0.30 TCGA-CV-5439-01 11 117280412 117280412 G T CEP164 Missense_Mutation p.S1276I 0.35 deleterious(0) benign(0.331) TCGA-CV-5439-01 11 12379876 12379876 G T MICALCL Missense_Mutation p.E646D 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-CV-5439-01 11 124519604 124519604 G T SIAE Silent p.I211I 0.29 TCGA-CV-5439-01 11 125359582 125359582 T C FEZ1 Missense_Mutation p.Y31C 0.23 tolerated(0.17) benign(0.003) TCGA-CV-5439-01 11 128781856 128781856 G A KCNJ5 Missense_Mutation p.V230M 0.20 deleterious(0) probably_damaging(1) TCGA-CV-5439-01 11 1651586 1651615 CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA - KRTAP5-5 In_Frame_Del p.Y192_P201del 0.28 TCGA-CV-5439-01 11 18231364 18231364 C T RP11-113D6.10 Silent p.F50F 0.29 TCGA-CV-5439-01 11 40136107 40136107 G T LRRC4C Missense_Mutation p.T579K 0.29 tolerated_low_confidence(0.92) benign(0.035) TCGA-CV-5439-01 11 56128169 56128169 C T OR8J1 Silent p.Y149Y 0.36 TCGA-CV-5439-01 11 5717432 5717432 C T TRIM22 5'UTR 0.24 TCGA-CV-5439-01 11 59814593 59814593 G - OOSP2 3'UTR 0.26 TCGA-CV-5439-01 11 66617739 66617739 G T PC Silent p.V890V 0.19 TCGA-CV-5439-01 11 8474394 8474394 G - STK33 Frame_Shift_Del p.T283Hfs*27 0.26 TCGA-CV-5439-01 11 89421766 89421766 G C FOLH1B RNA 0.31 TCGA-CV-5439-01 12 100774536 100774536 G T SLC17A8 Missense_Mutation p.R53S 0.11 deleterious(0.05) benign(0.06) TCGA-CV-5439-01 12 103352676 103352676 T C ASCL1 Silent p.S218S 0.24 TCGA-CV-5439-01 12 104160137 104160137 C T STAB2 3'UTR 0.25 TCGA-CV-5439-01 12 110246113 110246113 C A TRPV4 Nonsense_Mutation p.E183* 0.19 TCGA-CV-5439-01 12 12337036 12337036 G A LRP6 Missense_Mutation p.P285L 0.19 tolerated(0.06) benign(0.002) TCGA-CV-5439-01 12 15103494 15103494 C A ARHGDIB Silent p.T51T 0.20 TCGA-CV-5439-01 12 16516968 16516968 A G MGST1 Missense_Mutation p.Y154C 0.34 deleterious(0.01) possibly_damaging(0.827) TCGA-CV-5439-01 12 3763444 3763444 T A EFCAB4B Missense_Mutation p.Q327L 0.32 tolerated(0.2) benign(0.073) TCGA-CV-5439-01 12 49943928 49943928 G A KCNH3 Silent p.L578L 0.37 TCGA-CV-5439-01 12 53086203 53086203 A G KRT77 Splice_Site p.X476_splice 0.25 TCGA-CV-5439-01 12 56089326 56089326 C T ITGA7 Silent p.T665T 0.13 TCGA-CV-5439-01 12 56827878 56827878 T A TIMELESS Missense_Mutation p.H26L 0.26 tolerated(0.09) benign(0.06) TCGA-CV-5439-01 14 106330468 106330468 G T IGHJ4 Nonsense_Mutation p.Y1? 0.62 TCGA-CV-5439-01 14 23299461 23299461 C T MRPL52 Missense_Mutation p.A52V 0.05 tolerated(0.16) possibly_damaging(0.695) TCGA-CV-5439-01 14 59112773 59112773 A G DACT1 Missense_Mutation p.S478G 0.67 tolerated(0.2) benign(0.007) TCGA-CV-5439-01 15 24921169 24921169 G T NPAP1 Missense_Mutation p.R52L 0.22 tolerated(0.08) benign(0.433) TCGA-CV-5439-01 15 33895352 33895352 G A RYR3 Missense_Mutation p.A651T 0.14 benign(0.23) TCGA-CV-5439-01 15 54786889 54786889 C T UNC13C Missense_Mutation p.R1673C 0.05 tolerated_low_confidence(0.06) possibly_damaging(0.614) TCGA-CV-5439-01 15 85405961 85405961 G A ALPK3 Missense_Mutation p.E1611K 0.47 deleterious(0.02) probably_damaging(0.973) TCGA-CV-5439-01 16 15729832 15729832 C - KIAA0430 Frame_Shift_Del p.G171Afs*11 0.26 TCGA-CV-5439-01 16 57111883 57111883 A T NLRC5 Missense_Mutation p.T1678S 0.19 deleterious(0.02) possibly_damaging(0.897) TCGA-CV-5439-01 16 68716358 68716358 G T CDH3 Nonsense_Mutation p.E384* 0.27 TCGA-CV-5439-01 16 84438840 84438840 A G ATP2C2 Missense_Mutation p.Y106C 0.18 deleterious(0) probably_damaging(0.981) TCGA-CV-5439-01 16 9857484 9857484 C A GRIN2A Missense_Mutation p.R1306M 0.27 tolerated(0.08) probably_damaging(0.979) TCGA-CV-5439-01 17 10555773 10555773 G A MYH3 Silent p.Y104Y 0.54 TCGA-CV-5439-01 17 37828989 37828989 G A PGAP3 3'UTR 0.29 TCGA-CV-5439-01 17 39742810 39742810 C A KRT14 Missense_Mutation p.G93C 0.23 tolerated(0.12) unknown(0) TCGA-CV-5439-01 17 42458334 42458334 G T ITGA2B Missense_Mutation p.Q436K 0.31 deleterious(0) probably_damaging(0.999) TCGA-CV-5439-01 17 51901024 51901024 A T KIF2B Missense_Mutation p.Q210H 0.33 deleterious(0) benign(0.169) TCGA-CV-5439-01 17 67031933 67031933 C T ABCA9 Nonsense_Mutation p.W270* 0.38 TCGA-CV-5439-01 17 7576896 7576897 - G TP53 Frame_Shift_Ins p.Q317Pfs*20 0.31 TCGA-CV-5439-01 19 14069909 14069909 G A DCAF15 Silent p.A279A 0.77 TCGA-CV-5439-01 19 16003194 16003194 C T CYP4F2 Missense_Mutation p.M150I 0.43 deleterious(0) possibly_damaging(0.465) TCGA-CV-5439-01 19 18726931 18726931 G T TMEM59L Silent p.V185V 0.43 TCGA-CV-5439-01 19 2233901 2233901 G C PLEKHJ1 Missense_Mutation p.P130A 0.19 deleterious(0) probably_damaging(0.979) TCGA-CV-5439-01 19 30935385 30935385 G C ZNF536 Missense_Mutation p.D306H 0.37 deleterious(0.03) probably_damaging(1) TCGA-CV-5439-01 19 35849960 35849960 C T FFAR3 Silent p.N56N 0.10 TCGA-CV-5439-01 19 42820842 42820842 C T TMEM145 Silent p.L252L 0.08 TCGA-CV-5439-01 19 55144499 55144499 C A LILRB1 Missense_Mutation p.Q331K 0.31 tolerated(0.16) benign(0.021) TCGA-CV-5439-01 19 58571455 58571455 T A ZNF135 Intron 0.15 TCGA-CV-5439-01 19 9721791 9721791 T A ZNF561 Silent p.P182P 0.21 TCGA-CV-5439-01 19 9721793 9721793 G A ZNF561 Missense_Mutation p.P182S 0.20 tolerated(0.08) benign(0.219) TCGA-CV-5439-01 1 1269065 1269065 C T TAS1R3 Missense_Mutation p.R594W 0.13 tolerated(0.09) benign(0.011) TCGA-CV-5439-01 1 157773638 157773638 G T FCRL1 Missense_Mutation p.H106N 0.09 deleterious(0) benign(0.21) TCGA-CV-5439-01 1 160523210 160523210 G A CD84 Silent p.L240L 0.10 TCGA-CV-5439-01 1 166818449 166818449 T C POGK Silent p.Y211Y 0.42 TCGA-CV-5439-01 1 177930830 177930830 C A SEC16B Nonsense_Mutation p.E228* 0.23 TCGA-CV-5439-01 1 184764621 184764621 G A FAM129A Silent p.H759H 0.30 TCGA-CV-5439-01 1 196762707 196762707 T C CFHR3 3'UTR 0.24 TCGA-CV-5439-01 1 201618224 201618224 A G NAV1 Missense_Mutation p.E143G 0.29 deleterious(0) benign(0.299) TCGA-CV-5439-01 1 209804074 209804074 C T LAMB3 Missense_Mutation p.D277N 0.10 tolerated(0.44) benign(0.032) TCGA-CV-5439-01 1 215847915 215847915 G A USH2A Silent p.N4446N 0.58 TCGA-CV-5439-01 1 24077469 24077469 G A TCEB3 Missense_Mutation p.S151N 0.33 tolerated(0.05) benign(0.104) TCGA-CV-5439-01 1 247162685 247162685 C A ZNF695 Missense_Mutation p.W75L 0.19 tolerated(0.12) benign(0.307) TCGA-CV-5439-01 1 26898664 26898664 C A RPS6KA1 Intron 0.28 TCGA-CV-5439-01 1 39759235 39759235 G A MACF1 Missense_Mutation p.A705T 0.18 benign(0.423) TCGA-CV-5439-01 1 8386047 8386047 C A SLC45A1 Missense_Mutation p.D220E 0.38 deleterious(0) probably_damaging(1) TCGA-CV-5439-01 20 17446068 17446068 G A PCSK2 Missense_Mutation p.V434I 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-CV-5439-01 20 29632681 29632681 G T FRG1B Missense_Mutation p.A166S 0.02 deleterious(0.01) probably_damaging(0.997) TCGA-CV-5439-01 21 31743950 31743950 A G KRTAP13-2 3'UTR 0.35 TCGA-CV-5439-01 22 19195770 19195770 C T CLTCL1 Missense_Mutation p.R1165H 0.32 deleterious(0.04) benign(0.044) TCGA-CV-5439-01 22 38061758 38061758 G T PDXP Silent p.T257T 0.23 TCGA-CV-5439-01 22 46655440 46655440 G A PKDREJ Silent p.T1260T 0.33 TCGA-CV-5439-01 2 100203709 100203709 T C AFF3 Missense_Mutation p.K858R 0.31 deleterious(0) benign(0.018) TCGA-CV-5439-01 2 125284860 125284860 A G CNTNAP5 Splice_Site p.X492_splice 0.12 TCGA-CV-5439-01 2 135756434 135756434 T A MAP3K19 Missense_Mutation p.R150W 0.36 deleterious(0) possibly_damaging(0.598) TCGA-CV-5439-01 2 21234136 21234136 G T APOB Silent p.L1868L 0.25 TCGA-CV-5439-01 2 21255430 21255430 A G APOB Missense_Mutation p.V383A 0.33 possibly_damaging(0.67) TCGA-CV-5439-01 2 215840653 215840653 C T ABCA12 Missense_Mutation p.G1746D 0.31 deleterious(0) probably_damaging(1) TCGA-CV-5439-01 2 219494358 219494358 T C PLCD4 Missense_Mutation p.V364A 0.32 deleterious(0) possibly_damaging(0.509) TCGA-CV-5439-01 2 28117398 28117398 A T BRE Splice_Site 0.29 TCGA-CV-5439-01 2 3469400 3469400 G T TRAPPC12 Silent p.S570S 0.32 TCGA-CV-5439-01 2 86327213 86327213 C T POLR1A Missense_Mutation p.A54T 0.30 deleterious(0.01) possibly_damaging(0.609) TCGA-CV-5439-01 2 88427526 88427526 G A FABP1 Missense_Mutation p.S4F 0.36 deleterious(0) possibly_damaging(0.838) TCGA-CV-5439-01 2 90260016 90260016 G T IGKV1D-8 Missense_Mutation p.R40I 0.31 deleterious(0) benign(0.187) TCGA-CV-5439-01 3 140682107 140682107 T G SLC25A36 Intron 0.14 TCGA-CV-5439-01 3 169642876 169642876 A T SAMD7 Missense_Mutation p.K81M 0.06 deleterious(0) probably_damaging(0.915) TCGA-CV-5439-01 3 170819325 170819325 T C TNIK Missense_Mutation p.E835G 0.47 deleterious(0.03) possibly_damaging(0.695) TCGA-CV-5439-01 3 36897366 36897366 A T TRANK1 Missense_Mutation p.S1239T 0.50 tolerated(0.38) benign(0.002) TCGA-CV-5439-01 3 40299793 40299793 A C MYRIP 3'UTR 0.70 TCGA-CV-5439-01 3 50338477 50338477 G A HYAL1 Missense_Mutation p.A311V 0.10 tolerated(0.08) possibly_damaging(0.508) TCGA-CV-5439-01 4 6082004 6082004 C T JAKMIP1 Silent p.R379R 0.06 TCGA-CV-5439-01 5 1268652 1268652 C T TERT Silent p.A855A 0.10 TCGA-CV-5439-01 5 132197721 132197721 C T GDF9 Missense_Mutation p.D309N 0.25 tolerated(0.53) benign(0.002) TCGA-CV-5439-01 5 156479590 156479590 G A HAVCR1 Missense_Mutation p.T152M 0.16 tolerated(0.14) unknown(0) TCGA-CV-5439-01 5 33637800 33637800 C A ADAMTS12 Missense_Mutation p.L590F 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-CV-5439-01 5 53751689 53751689 G A HSPB3 Missense_Mutation p.G24S 0.09 tolerated(0.43) benign(0.039) TCGA-CV-5439-01 5 76624877 76624877 G T PDE8B Silent p.S215S 0.52 TCGA-CV-5439-01 6 13642754 13642754 G A RANBP9 Silent p.D394D 0.24 TCGA-CV-5439-01 6 152554995 152554995 C A SYNE1 Missense_Mutation p.R6878L 0.33 probably_damaging(0.949) TCGA-CV-5439-01 6 160969605 160969605 T A LPA Missense_Mutation p.Y1687F 0.28 tolerated(0.36) probably_damaging(0.996) TCGA-CV-5439-01 6 17649453 17649453 G A NUP153 Missense_Mutation p.P492S 0.27 tolerated(0.35) benign(0.032) TCGA-CV-5439-01 6 33423586 33423586 C T ZBTB9 Missense_Mutation p.P237S 0.41 tolerated(0.38) benign(0.018) TCGA-CV-5439-01 6 44247986 44247986 G A TCTE1 Missense_Mutation p.R480W 0.08 deleterious(0) possibly_damaging(0.724) TCGA-CV-5439-01 6 70071099 70071099 C T BAI3 Missense_Mutation p.P1312S 0.23 deleterious(0) probably_damaging(0.996) TCGA-CV-5439-01 6 72960961 72960961 A T RIMS1 Missense_Mutation p.H863L 0.36 deleterious(0) possibly_damaging(0.885) TCGA-CV-5439-01 7 100778862 100778862 C T SERPINE1 Silent p.F329F 0.31 TCGA-CV-5439-01 7 150390469 150390469 A G GIMAP2 3'UTR 0.29 TCGA-CV-5439-01 7 38288988 38288988 T A TRGC2 Missense_Mutation p.M63L 0.25 tolerated(0.17) benign(0.084) TCGA-CV-5439-01 7 38288989 38288989 G T TRGC2 Silent p.T62T 0.25 TCGA-CV-5439-01 7 38433623 38433623 G T AMPH Silent p.L530L 0.38 TCGA-CV-5439-01 7 62752752 62752752 T A ZNF733P RNA 0.15 TCGA-CV-5439-01 7 88963462 88963462 C T ZNF804B Missense_Mutation p.S389L 0.19 tolerated(0.26) benign(0.012) TCGA-CV-5439-01 8 102731518 102731518 C A NCALD Missense_Mutation p.G114C 0.33 deleterious(0) probably_damaging(1) TCGA-CV-5439-01 8 120435311 120435311 C A NOV Missense_Mutation p.P338H 0.29 deleterious(0) probably_damaging(1) TCGA-CV-5439-01 8 42234459 42234459 G T DKK4 Silent p.A35A 0.22 TCGA-CV-5439-01 8 61655163 61655163 C T CHD7 Missense_Mutation p.A391V 0.29 benign(0.134) TCGA-CV-5439-01 8 73942569 73942569 A G TERF1 Splice_Site p.X296_splice 0.18 TCGA-CV-5439-01 9 104335733 104335733 C T GRIN3A Missense_Mutation p.R1024Q 0.40 tolerated(0.11) benign(0.009) TCGA-CV-5439-01 9 115805240 115805240 G T ZFP37 Missense_Mutation p.A553D 0.19 deleterious(0) possibly_damaging(0.635) TCGA-CV-5439-01 9 123384920 123384920 C A MEGF9 Missense_Mutation p.R306L 0.30 tolerated(0.2) probably_damaging(0.933) TCGA-CV-5439-01 9 123384926 123384926 T G MEGF9 Missense_Mutation p.N304T 0.29 deleterious(0) possibly_damaging(0.741) TCGA-CV-5439-01 9 139418287 139418287 C A NOTCH1 Silent p.G95G 0.31 TCGA-CV-5439-01 9 139418289 139418289 C A NOTCH1 Missense_Mutation p.G95W 0.30 deleterious(0) probably_damaging(0.983) TCGA-CV-5439-01 9 139981560 139981560 A G MAN1B1 Missense_Mutation p.M37V 0.47 tolerated_low_confidence(0.05) benign(0.007) TCGA-CV-5439-01 9 15510244 15510244 C T PSIP1 5'UTR 0.09 TCGA-CV-5439-01 9 72071296 72071296 C T APBA1 Missense_Mutation p.G552E 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-CV-5439-01 9 84605871 84605871 G A SPATA31D1 Silent p.S162S 0.06 TCGA-CV-5439-01 9 98279222 98279222 G C RP11-435O5.4 3'Flank 0.25 TCGA-CV-5439-01 9 99227713 99227713 A G HABP4 Missense_Mutation p.R203G 0.40 tolerated(0.17) possibly_damaging(0.701) TCGA-CV-5439-01 X 140994291 140994291 T - MAGEC1 Frame_Shift_Del p.Q370Sfs*17 0.42 TCGA-CV-5439-01 X 34149650 34149650 G T FAM47A Missense_Mutation p.P249Q 0.48 tolerated(0.11) probably_damaging(0.997) TCGA-CV-5439-01 X 76875969 76875969 A G ATRX Silent p.H1722H 0.84 TCGA-CV-5439-01 X 77301812 77301812 G C ATP7A Missense_Mutation p.E1416D 0.08 tolerated(0.11) benign(0.033) TCGA-CV-5439-01 X 88008503 88008503 G C CPXCR1 Missense_Mutation p.D30H 0.93 deleterious(0) probably_damaging(0.979) TCGA-CV-5439-01 X 99901218 99901218 T C SRPX2 5'UTR 0.73 TCGA-CV-5440-01 10 101117299 101117299 T A CNNM1 Missense_Mutation p.V535E 0.32 deleterious(0.02) probably_damaging(1) TCGA-CV-5440-01 10 101636867 101636867 G A DNMBP 3'UTR 0.20 TCGA-CV-5440-01 10 101639864 101639864 G C DNMBP Missense_Mutation p.L1418V 0.15 tolerated(0.39) benign(0.003) TCGA-CV-5440-01 10 101715220 101715220 C G DNMBP Missense_Mutation p.E671Q 0.22 tolerated(0.17) benign(0.008) TCGA-CV-5440-01 10 101715433 101715433 C G DNMBP Missense_Mutation p.E600Q 0.19 tolerated(0.2) benign(0.017) TCGA-CV-5440-01 10 112343699 112343701 AAG - SMC3 In_Frame_Del p.E359del 0.19 TCGA-CV-5440-01 10 121339445 121339445 A T TIAL1 Splice_Site p.X166_splice 0.40 TCGA-CV-5440-01 10 43601966 43601966 A T RET Missense_Mutation p.E337V 0.38 deleterious(0) possibly_damaging(0.697) TCGA-CV-5440-01 10 45479530 45479530 G T RASSF4 Silent p.V114V 0.50 TCGA-CV-5440-01 10 46222872 46222872 G C FAM21C Missense_Mutation p.R4P 0.18 tolerated_low_confidence(0.08) possibly_damaging(0.619) TCGA-CV-5440-01 10 63851485 63851485 G A ARID5B Missense_Mutation p.V755I 0.05 deleterious(0.03) possibly_damaging(0.897) TCGA-CV-5440-01 10 64425946 64425946 C - ZNF365 Frame_Shift_Del p.Q427Kfs*4 0.22 TCGA-CV-5440-01 10 75051479 75051479 C T TTC18 Missense_Mutation p.E717K 0.16 deleterious(0.01) benign(0.14) TCGA-CV-5440-01 10 75051480 75051480 C T TTC18 Silent p.L716L 0.15 TCGA-CV-5440-01 10 89624189 89624189 C G PTEN 5'UTR 0.42 TCGA-CV-5440-01 11 12379876 12379876 G A MICALCL Silent p.E646E 0.31 TCGA-CV-5440-01 11 129794994 129794994 C A PRDM10 Missense_Mutation p.C558F 0.60 tolerated(0.37) benign(0.267) TCGA-CV-5440-01 11 46911618 46911618 C T LRP4 Missense_Mutation p.D657N 0.16 deleterious(0) probably_damaging(1) TCGA-CV-5440-01 11 50003589 50003589 C A OR4C12 Missense_Mutation p.G150V 0.38 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CV-5440-01 11 55065675 55065675 T A TRIM51HP RNA 0.18 TCGA-CV-5440-01 11 70318862 70318862 A G SHANK2 3'UTR 0.07 TCGA-CV-5440-01 11 83641505 83641505 G T DLG2 Missense_Mutation p.S454R 0.71 tolerated(0.23) probably_damaging(0.988) TCGA-CV-5440-01 12 10332096 10332096 G A TMEM52B 5'UTR 0.10 TCGA-CV-5440-01 12 15261935 15261935 G C RERG 3'UTR 0.08 TCGA-CV-5440-01 12 15262053 15262053 G A RERG Silent p.I197I 0.07 TCGA-CV-5440-01 12 56721836 56721836 T A PAN2 Silent p.G198G 0.39 TCGA-CV-5440-01 12 6691342 6691342 G C CHD4 Silent p.V1492V 0.12 TCGA-CV-5440-01 12 6979823 6979823 C T TPI1 3'UTR 0.21 TCGA-CV-5440-01 12 78562566 78562566 T C NAV3 Missense_Mutation p.I1634T 0.14 deleterious(0) possibly_damaging(0.69) TCGA-CV-5440-01 12 81503433 81503433 C T ACSS3 Missense_Mutation p.P136S 0.20 deleterious(0) probably_damaging(1) TCGA-CV-5440-01 12 81762520 81762520 G C PPFIA2 Missense_Mutation p.A489G 0.15 tolerated(0.21) benign(0.333) TCGA-CV-5440-01 13 111546470 111546470 T A ANKRD10 Intron 0.11 TCGA-CV-5440-01 13 113439477 113439477 G T ATP11A Missense_Mutation p.S23I 0.55 deleterious(0) benign(0.128) TCGA-CV-5440-01 13 25451309 25451309 C G RNF17 Silent p.L1586L 0.37 TCGA-CV-5440-01 13 32914805 32914805 A G BRCA2 Missense_Mutation p.I2105V 0.44 tolerated(0.38) benign(0.034) TCGA-CV-5440-01 13 49752754 49752754 G A FNDC3A Silent p.V527V 0.12 TCGA-CV-5440-01 14 100706146 100706146 G A YY1 Missense_Mutation p.G189R 0.29 tolerated(0.28) benign(0.021) TCGA-CV-5440-01 14 88945294 88945294 C T PTPN21 Silent p.K827K 0.43 TCGA-CV-5440-01 14 92563179 92563179 C A ATXN3 Nonsense_Mutation p.E10* 0.28 TCGA-CV-5440-01 15 25302066 25302066 G C SNORD116-3 RNA 0.21 TCGA-CV-5440-01 15 42003059 42003059 C T MGA Nonsense_Mutation p.R866* 0.21 TCGA-CV-5440-01 15 43026218 43026218 G C CDAN1 Missense_Mutation p.Q429E 0.67 tolerated(0.06) possibly_damaging(0.878) TCGA-CV-5440-01 15 43939313 43939313 G A CATSPER2 Missense_Mutation p.P108L 0.54 tolerated(0.28) benign(0.073) TCGA-CV-5440-01 15 44887540 44887540 C T SPG11 Missense_Mutation p.E1518K 0.51 tolerated(0.21) probably_damaging(0.953) TCGA-CV-5440-01 15 49320740 49320740 A G SECISBP2L Silent p.I268I 0.52 TCGA-CV-5440-01 15 85326988 85326988 C T ZNF592 Missense_Mutation p.S361L 0.32 deleterious(0) probably_damaging(0.993) TCGA-CV-5440-01 15 85405871 85405871 G A ALPK3 Missense_Mutation p.E1581K 0.38 deleterious(0) probably_damaging(0.997) TCGA-CV-5440-01 15 85405916 85405916 G A ALPK3 Missense_Mutation p.D1596N 0.30 deleterious(0.03) probably_damaging(0.987) TCGA-CV-5440-01 15 90785083 90785083 G C GDPGP1 Missense_Mutation p.A315P 0.48 tolerated(0.59) benign(0.057) TCGA-CV-5440-01 16 14312825 14312825 A G MKL2 Silent p.P221P 0.22 TCGA-CV-5440-01 16 2164258 2164258 G C PKD1 Silent p.L922L 0.27 TCGA-CV-5440-01 16 67969351 67969351 A G PSMB10 Missense_Mutation p.L177P 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-5440-01 16 74384602 74384602 T C RP11-252A24.2 RNA 0.17 TCGA-CV-5440-01 16 89350644 89350644 G C ANKRD11 Nonsense_Mutation p.S769* 0.17 TCGA-CV-5440-01 17 10544406 10544406 G C MYH3 Missense_Mutation p.Q721E 0.12 deleterious(0) benign(0.108) TCGA-CV-5440-01 17 16325907 16325930 CCACAGAGGGCTCCACAGGTAAGA - TRPV2 Splice_Site p.X112_splice 0.24 TCGA-CV-5440-01 17 3392579 3392579 G T ASPA Missense_Mutation p.D193Y 0.18 tolerated(0.07) probably_damaging(0.986) TCGA-CV-5440-01 17 34935812 34935812 T C GGNBP2 Missense_Mutation p.F328S 0.21 deleterious(0.02) probably_damaging(0.922) TCGA-CV-5440-01 17 46685394 46685394 T C HOXB7 Missense_Mutation p.E155G 0.43 deleterious(0) probably_damaging(0.996) TCGA-CV-5440-01 17 72951930 72951930 G A HID1 Silent p.F531F 0.44 TCGA-CV-5440-01 17 7483025 7483025 C T CD68 Silent p.A10A 0.20 TCGA-CV-5440-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.34 deleterious(0) probably_damaging(0.995) TCGA-CV-5440-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.45 deleterious(0.04) possibly_damaging(0.898) TCGA-CV-5440-01 17 9774114 9774114 C G GLP2R Silent p.L369L 0.34 TCGA-CV-5440-01 18 21526172 21526172 G A LAMA3 Missense_Mutation p.G3092E 0.14 probably_damaging(0.989) TCGA-CV-5440-01 19 18313497 18313497 G C RAB3A Missense_Mutation p.N18K 0.24 deleterious(0.05) possibly_damaging(0.579) TCGA-CV-5440-01 19 18853806 18853806 C T CRTC1 Silent p.I71I 0.38 TCGA-CV-5440-01 19 21991574 21991574 C G ZNF43 Missense_Mutation p.G422A 0.13 deleterious(0.01) benign(0.367) TCGA-CV-5440-01 19 44738977 44738977 C T ZNF227 Nonsense_Mutation p.Q132* 0.31 TCGA-CV-5440-01 19 46215299 46215299 G A FBXO46 Silent p.F485F 0.20 TCGA-CV-5440-01 19 52729262 52729262 C T PPP2R1A 3'UTR 0.17 TCGA-CV-5440-01 19 7685323 7685323 C T XAB2 Missense_Mutation p.A702T 0.11 tolerated(0.39) benign(0) TCGA-CV-5440-01 1 10690033 10690033 G C PEX14 Missense_Mutation p.E375Q 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.588) TCGA-CV-5440-01 1 153907346 153907346 C T DENND4B Missense_Mutation p.R888H 0.14 deleterious(0) probably_damaging(0.994) TCGA-CV-5440-01 1 168510129 168510129 C A XCL2 3'UTR 0.27 TCGA-CV-5440-01 1 176811605 176811605 C T PAPPA2 3'UTR 0.42 TCGA-CV-5440-01 1 185970752 185970753 TG - HMCN1 Frame_Shift_Del p.V1410Efs*25 0.16 TCGA-CV-5440-01 1 209799093 209799093 C A LAMB3 Missense_Mutation p.D626Y 0.04 deleterious(0.01) benign(0.322) TCGA-CV-5440-01 1 213186481 213186481 C G ANGEL2 Missense_Mutation p.M113I 0.18 deleterious(0.01) benign(0.062) TCGA-CV-5440-01 1 249210815 249210815 G A PGBD2 Missense_Mutation p.G11E 0.40 tolerated_low_confidence(0.34) benign(0.001) TCGA-CV-5440-01 1 2523433 2523433 C A MMEL1 Missense_Mutation p.D701Y 0.73 deleterious(0) probably_damaging(0.987) TCGA-CV-5440-01 1 41303381 41303381 G A KCNQ4 Missense_Mutation p.R597Q 0.47 deleterious(0.01) possibly_damaging(0.886) TCGA-CV-5440-01 1 89834114 89834114 G T GBP6 Nonsense_Mutation p.E2* 0.36 TCGA-CV-5440-01 20 18446012 18446012 C G DZANK1 5'UTR 0.17 TCGA-CV-5440-01 20 44673612 44673612 G A SLC12A5 Missense_Mutation p.E491K 0.19 deleterious(0.03) possibly_damaging(0.523) TCGA-CV-5440-01 20 62065124 62065124 G T KCNQ2 Intron 0.12 TCGA-CV-5440-01 21 16338750 16338750 A - NRIP1 Frame_Shift_Del p.E589Kfs*3 0.37 TCGA-CV-5440-01 21 32185551 32185551 G - KRTAP8-1 5'UTR 0.35 TCGA-CV-5440-01 21 33331187 33331187 C T HUNK Missense_Mutation p.T260M 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-CV-5440-01 21 46925146 46925146 C T COL18A1 Silent p.P1169P 0.33 TCGA-CV-5440-01 22 50752701 50752701 C G DENND6B Missense_Mutation p.G358A 0.12 tolerated(0.14) benign(0.314) TCGA-CV-5440-01 2 121997182 121997182 G A TFCP2L1 Missense_Mutation p.P271L 0.48 tolerated(0.19) benign(0.165) TCGA-CV-5440-01 2 152342139 152342139 G A NEB 3'UTR 0.14 TCGA-CV-5440-01 2 179484357 179484357 C G TTN Missense_Mutation p.E15563Q 0.20 TCGA-CV-5440-01 2 185802803 185802803 G A ZNF804A Missense_Mutation p.E894K 0.16 tolerated(0.85) benign(0.037) TCGA-CV-5440-01 2 191900890 191900890 C T STAT4 Missense_Mutation p.V524I 0.38 tolerated(0.2) benign(0.063) TCGA-CV-5440-01 2 225360546 225360546 T C CUL3 Intron 0.61 TCGA-CV-5440-01 2 242078139 242078139 C T PASK Missense_Mutation p.R224H 0.62 tolerated(0.34) benign(0) TCGA-CV-5440-01 3 10331501 10331501 A T GHRL Missense_Mutation p.L57H 0.63 tolerated(0.08) probably_damaging(0.937) TCGA-CV-5440-01 3 109056409 109056409 T G DPPA4 5'UTR 0.86 TCGA-CV-5440-01 3 112642398 112642398 T A CD200R1 3'UTR 0.79 TCGA-CV-5440-01 3 119211292 119211292 T C POGLUT1 3'UTR 0.71 TCGA-CV-5440-01 3 132036236 132036236 C G ACPP 5'Flank 0.12 TCGA-CV-5440-01 3 135974807 135974807 A T PCCB Missense_Mutation p.D98V 0.16 deleterious_low_confidence(0) possibly_damaging(0.561) TCGA-CV-5440-01 3 148791054 148791054 A G HLTF Silent p.Y195Y 0.74 TCGA-CV-5440-01 3 169482828 169482828 C G ACTRT3 3'Flank 0.15 TCGA-CV-5440-01 3 189612152 189612152 G T TP63 Missense_Mutation p.G635V 0.13 tolerated(0.31) possibly_damaging(0.708) TCGA-CV-5440-01 3 49210166 49210166 G C KLHDC8B 5'UTR 0.50 TCGA-CV-5440-01 3 49210467 49210467 G A KLHDC8B Missense_Mutation p.E89K 0.87 tolerated(0.79) benign(0.016) TCGA-CV-5440-01 3 98217323 98217323 G A OR5K2 Missense_Mutation p.E267K 0.89 tolerated(0.22) benign(0.047) TCGA-CV-5440-01 4 52894901 52894901 C T SGCB Missense_Mutation p.E206K 0.09 tolerated(0.26) benign(0.016) TCGA-CV-5440-01 4 70351035 70351035 C G UGT2B4 Missense_Mutation p.D401H 0.36 deleterious(0.01) benign(0.047) TCGA-CV-5440-01 5 129241116 129241116 C T CHSY3 Silent p.F198F 0.41 TCGA-CV-5440-01 5 134044567 134044567 C G SEC24A Missense_Mutation p.L906V 0.89 deleterious(0) possibly_damaging(0.814) TCGA-CV-5440-01 5 79284343 79284343 C T MTX3 Missense_Mutation p.R88K 0.85 tolerated(0.06) probably_damaging(0.999) TCGA-CV-5440-01 6 117121842 117121842 G T GPRC6A Missense_Mutation p.H485N 0.25 tolerated(0.51) benign(0.007) TCGA-CV-5440-01 6 155743937 155743937 G C NOX3 Missense_Mutation p.P400R 0.39 tolerated(0.08) benign(0.015) TCGA-CV-5440-01 6 155743938 155743938 G T NOX3 Missense_Mutation p.P400T 0.39 deleterious(0.05) benign(0.428) TCGA-CV-5440-01 6 163510334 163510334 C G PACRG Silent p.L169L 0.33 TCGA-CV-5440-01 6 2833893 2833893 C T SERPINB1 Silent p.R363R 0.14 TCGA-CV-5440-01 6 30681733 30681733 G A MDC1 Missense_Mutation p.L122F 0.71 deleterious(0) probably_damaging(0.998) TCGA-CV-5440-01 6 30681830 30681830 G A MDC1 Silent p.L89L 0.78 TCGA-CV-5440-01 6 30867114 30867114 G A DDR1 3'UTR 0.74 TCGA-CV-5440-01 6 30867188 30867188 T C DDR1 3'UTR 0.80 TCGA-CV-5440-01 6 31122387 31122387 T A CCHCR1 Silent p.R229R 0.76 TCGA-CV-5440-01 6 52550825 52550825 G C TMEM14A Missense_Mutation p.R93T 0.74 deleterious(0) benign(0.126) TCGA-CV-5440-01 7 100677236 100677236 C T MUC17 Missense_Mutation p.P847S 0.35 unknown(0) TCGA-CV-5440-01 7 104753117 104753117 G A KMT2E Silent p.P1638P 0.05 TCGA-CV-5440-01 7 122338572 122338572 C A RNF133 Missense_Mutation p.G134V 0.23 deleterious(0) probably_damaging(1) TCGA-CV-5440-01 7 128407640 128407640 C T CALU Silent p.I266I 0.61 TCGA-CV-5440-01 7 31848696 31848696 T C PDE1C Missense_Mutation p.T674A 0.36 tolerated_low_confidence(0.7) benign(0) TCGA-CV-5440-01 7 47384376 47384388 GCTGGGCTGCTCA - TNS3 Frame_Shift_Del p.L872Pfs*129 0.25 TCGA-CV-5440-01 7 64441840 64441840 C T ZNF117 5'UTR 0.05 TCGA-CV-5440-01 7 73521402 73521402 G A LIMK1 Missense_Mutation p.R315H 0.40 tolerated(0.13) benign(0.012) TCGA-CV-5440-01 8 104928744 104928744 T C RIMS2 Missense_Mutation p.L672P 0.69 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-5440-01 8 105001535 105001535 G A RIMS2 Missense_Mutation p.R977Q 0.17 tolerated_low_confidence(0.35) possibly_damaging(0.86) TCGA-CV-5440-01 8 117668121 117668121 T C EIF3H Silent p.K227K 0.25 TCGA-CV-5440-01 8 124042859 124042859 G A DERL1 Missense_Mutation p.T84M 0.12 tolerated(0.13) possibly_damaging(0.77) TCGA-CV-5440-01 8 126062854 126062854 G A KIAA0196 Silent p.R717R 0.12 TCGA-CV-5440-01 8 38880809 38880809 C G ADAM9 Missense_Mutation p.I293M 0.18 deleterious(0.01) possibly_damaging(0.675) TCGA-CV-5440-01 8 39009051 39009051 T C ADAM32 Missense_Mutation p.I170T 0.38 deleterious(0.03) benign(0.139) TCGA-CV-5440-01 8 48848436 48848436 G C PRKDC Missense_Mutation p.L435V 0.39 probably_damaging(0.976) TCGA-CV-5440-01 8 59852094 59852094 C A TOX Missense_Mutation p.G60C 0.30 tolerated(0.08) probably_damaging(0.997) TCGA-CV-5440-01 8 68092140 68092140 G T CSPP1 Nonsense_Mutation p.E1062* 0.31 TCGA-CV-5440-01 9 101788189 101788189 C G COL15A1 Missense_Mutation p.P662A 0.69 tolerated(0.06) probably_damaging(0.996) TCGA-CV-5440-01 9 115598539 115598539 A G SNX30 Missense_Mutation p.M222V 0.82 tolerated(0.56) benign(0) TCGA-CV-5440-01 9 126319866 126319866 C A DENND1A Missense_Mutation p.A326S 0.32 deleterious(0.01) possibly_damaging(0.795) TCGA-CV-5440-01 9 134454883 134454883 C G RAPGEF1 3'UTR 0.39 TCGA-CV-5440-01 9 136132863 136132863 C T RP11-430N14.4 5'Flank 0.06 TCGA-CV-5440-01 9 139741083 139741083 C G C9orf172 Missense_Mutation p.I739M 0.18 deleterious(0.04) possibly_damaging(0.692) TCGA-CV-5440-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.81 deleterious(0) probably_damaging(0.999) TCGA-CV-5440-01 9 72933828 72933829 - A SMC5 Frame_Shift_Ins p.T702Nfs*28 0.39 TCGA-CV-5440-01 9 74327069 74327069 C A TMEM2 Missense_Mutation p.G900V 0.86 deleterious(0) possibly_damaging(0.816) TCGA-CV-5440-01 9 82333859 82333859 G A TLE4 Silent p.K521K 0.12 TCGA-CV-5440-01 9 84531703 84531703 C G SPATA31D5P RNA 0.15 TCGA-CV-5440-01 9 93641137 93641137 C T SYK Silent p.L495L 0.18 TCGA-CV-5440-01 9 99521412 99521412 G A ZNF510 Missense_Mutation p.T567M 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-CV-5440-01 X 102931249 102931249 C G MORF4L2 Missense_Mutation p.G236A 0.11 deleterious(0.02) possibly_damaging(0.78) TCGA-CV-5440-01 X 117773475 117773475 C T DOCK11 Missense_Mutation p.S1360L 0.45 tolerated(0.1) benign(0.001) TCGA-CV-5440-01 X 54228471 54228471 G T WNK3 Missense_Mutation p.Q1676K 0.30 tolerated(0.06) benign(0.011) TCGA-CV-5440-01 X 71424823 71424823 T C ERCC6L 3'UTR 0.90 TCGA-CV-5441-01 10 101945402 101945402 C A ERLIN1 5'UTR 0.27 TCGA-CV-5441-01 10 102050189 102050189 C A PKD2L1 Nonsense_Mutation p.G699* 0.30 TCGA-CV-5441-01 10 11963064 11963064 C T UPF2 3'UTR 0.37 TCGA-CV-5441-01 10 129904753 129904753 G A MKI67 Missense_Mutation p.T1784I 0.29 tolerated(0.19) benign(0.194) TCGA-CV-5441-01 10 135011840 135011840 G T KNDC1 Splice_Site p.X636_splice 0.38 TCGA-CV-5441-01 10 135011841 135011841 G T KNDC1 Missense_Mutation p.G636V 0.35 deleterious(0) benign(0.348) TCGA-CV-5441-01 10 15820936 15820936 G C FAM188A 3'UTR 0.24 TCGA-CV-5441-01 10 31816121 31816121 G T ZEB1 Missense_Mutation p.A1103S 0.38 tolerated_low_confidence(0.09) benign(0) TCGA-CV-5441-01 10 49763518 49763518 C A ARHGAP22 Missense_Mutation p.E104D 0.30 deleterious(0.01) benign(0.083) TCGA-CV-5441-01 10 50946031 50946031 C A OGDHL Missense_Mutation p.V827L 0.29 tolerated(0.19) benign(0.034) TCGA-CV-5441-01 10 56077052 56077052 G T PCDH15 Silent p.A285A 0.34 TCGA-CV-5441-01 10 68280484 68280484 C A CTNNA3 Silent p.A474A 0.31 TCGA-CV-5441-01 10 73059058 73059058 A G UNC5B 3'UTR 0.32 TCGA-CV-5441-01 10 85901368 85901368 C T GHITM Silent p.L38L 0.30 TCGA-CV-5441-01 10 88446827 88446827 G T LDB3 Missense_Mutation p.A231S 0.24 tolerated(1) benign(0.115) TCGA-CV-5441-01 10 97516060 97516060 G C ENTPD1 Intron 0.29 TCGA-CV-5441-01 11 1016760 1016760 G T MUC6 Missense_Mutation p.T2014N 0.05 probably_damaging(0.989) TCGA-CV-5441-01 11 105623920 105623920 T C GRIA4 Missense_Mutation p.F154S 0.44 deleterious(0.01) probably_damaging(0.986) TCGA-CV-5441-01 11 123777721 123777721 G - OR8D4 Frame_Shift_Del p.D195Mfs*4 0.38 TCGA-CV-5441-01 11 17169081 17169081 G C PIK3C2A Missense_Mutation p.Q515E 0.26 tolerated(0.07) benign(0.071) TCGA-CV-5441-01 11 30937083 30937083 G A DCDC1 Missense_Mutation p.R1210C 0.24 tolerated(0.1) possibly_damaging(0.835) TCGA-CV-5441-01 11 3688905 3688905 C G CHRNA10 Missense_Mutation p.R151P 0.25 deleterious(0) possibly_damaging(0.889) TCGA-CV-5441-01 11 48267094 48267094 C T OR4X2 Missense_Mutation p.H147Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 11 51515641 51515641 C T OR4C46 Silent p.H120H 0.41 TCGA-CV-5441-01 11 5221655 5221655 C T OR51V1 Silent p.G92G 0.30 TCGA-CV-5441-01 11 55110944 55110944 A G OR4A16 Missense_Mutation p.I90V 0.45 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-CV-5441-01 11 55540998 55540998 C A OR5D13 Missense_Mutation p.L29I 0.46 deleterious(0.02) possibly_damaging(0.45) TCGA-CV-5441-01 11 55999771 55999771 C A OR5T2 Missense_Mutation p.M297I 0.45 tolerated(0.08) benign(0.168) TCGA-CV-5441-01 11 57114095 57114095 G T P2RX3 Missense_Mutation p.G66V 0.68 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 11 5717794 5717794 A G TRIM22 Missense_Mutation p.D111G 0.35 deleterious(0) probably_damaging(0.938) TCGA-CV-5441-01 11 58125729 58125729 C A OR5B17 Missense_Mutation p.A272S 0.60 tolerated_low_confidence(0.06) possibly_damaging(0.65) TCGA-CV-5441-01 11 59224522 59224522 T A OR4D6 Missense_Mutation p.V30D 0.43 deleterious(0.01) benign(0.203) TCGA-CV-5441-01 11 6048725 6048725 G A OR56A1 Silent p.L70L 0.25 TCGA-CV-5441-01 11 62430392 62430392 G A C11orf48 3'UTR 0.40 TCGA-CV-5441-01 11 65422031 65422031 T G RELA Missense_Mutation p.M492L 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.636) TCGA-CV-5441-01 11 65638688 65638688 C T EFEMP2 Missense_Mutation p.A103T 0.23 tolerated(0.28) benign(0.003) TCGA-CV-5441-01 11 6815970 6815970 T C OR6A2 Missense_Mutation p.S324G 0.18 tolerated_low_confidence(0.51) benign(0) TCGA-CV-5441-01 11 72004448 72004448 G A CLPB Missense_Mutation p.A696V 0.19 deleterious_low_confidence(0.05) benign(0.044) TCGA-CV-5441-01 11 73008628 73008628 C A P2RY6 3'UTR 0.12 TCGA-CV-5441-01 11 88911460 88911460 A C TYR Silent p.T113T 0.39 TCGA-CV-5441-01 11 9005172 9005172 A G NRIP3 Intron 0.33 TCGA-CV-5441-01 12 101365164 101365164 G A ANO4 Missense_Mutation p.M144I 0.34 deleterious(0.01) benign(0.087) TCGA-CV-5441-01 12 10569334 10569334 C T KLRC3 Nonsense_Mutation p.W173* 0.39 TCGA-CV-5441-01 12 106632696 106632696 A T CKAP4 3'UTR 0.29 TCGA-CV-5441-01 12 109723196 109723196 G T FOXN4 Missense_Mutation p.L272M 0.33 deleterious(0.01) possibly_damaging(0.812) TCGA-CV-5441-01 12 11244286 11244286 C T TAS2R43 Missense_Mutation p.M181I 0.50 tolerated(0.09) benign(0.001) TCGA-CV-5441-01 12 113543660 113543660 C A RASAL1 Silent p.P564P 0.23 TCGA-CV-5441-01 12 11506794 11506794 G T PRB1 Silent p.P81P 0.28 TCGA-CV-5441-01 12 11506795 11506795 G T PRB1 Missense_Mutation p.P81H 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-5441-01 12 129294620 129294620 T C SLC15A4 Silent p.Q293Q 0.34 TCGA-CV-5441-01 12 129360582 129360582 C G GLT1D1 Silent p.L64L 0.31 TCGA-CV-5441-01 12 130185032 130185032 G A TMEM132D Silent p.Y97Y 0.36 TCGA-CV-5441-01 12 133212601 133212601 T C POLE Silent p.S1896S 0.31 TCGA-CV-5441-01 12 21472443 21472443 C A SLCO1A2 Intron 0.27 TCGA-CV-5441-01 12 21970133 21970133 C A ABCC9 Nonsense_Mutation p.E1294* 0.27 TCGA-CV-5441-01 12 2967768 2967768 G T FOXM1 3'UTR 0.40 TCGA-CV-5441-01 12 33538213 33538213 A C SYT10 Missense_Mutation p.L364R 0.25 deleterious(0) probably_damaging(0.998) TCGA-CV-5441-01 12 49420595 49420595 G A KMT2D Silent p.L5052L 0.28 TCGA-CV-5441-01 12 49420606 49420606 C A KMT2D Missense_Mutation p.R5048L 0.28 unknown(0) TCGA-CV-5441-01 12 52979793 52979793 G A KRT72 Silent p.S503S 0.31 TCGA-CV-5441-01 12 53189876 53189876 G C KRT3 5'UTR 0.23 TCGA-CV-5441-01 12 54913116 54913116 G T NCKAP1L Missense_Mutation p.C542F 0.31 deleterious(0) probably_damaging(0.943) TCGA-CV-5441-01 12 56232343 56232343 A C MMP19 Intron 0.34 TCGA-CV-5441-01 12 56566376 56566376 G A SMARCC2 Missense_Mutation p.P588L 0.32 tolerated(0.37) benign(0.008) TCGA-CV-5441-01 12 57112598 57112604 TGGGTGC - NACA Intron 0.25 TCGA-CV-5441-01 12 58001107 58001107 G T DTX3 Missense_Mutation p.R154L 0.19 tolerated(0.16) benign(0.008) TCGA-CV-5441-01 12 7241888 7241888 C T C1R Splice_Site p.X255_splice 0.38 TCGA-CV-5441-01 12 72955994 72955994 G T TRHDE Missense_Mutation p.W568L 0.42 deleterious(0) probably_damaging(0.973) TCGA-CV-5441-01 12 75692714 75692714 C A CAPS2 Missense_Mutation p.G315V 0.29 deleterious(0.01) probably_damaging(1) TCGA-CV-5441-01 12 8083212 8083212 C A SLC2A3 Silent p.G179G 0.20 TCGA-CV-5441-01 12 9089872 9089872 C T PHC1 Missense_Mutation p.R860C 0.24 deleterious(0) unknown(0) TCGA-CV-5441-01 12 91347314 91347314 C G CCER1 Missense_Mutation p.Q402H 0.06 deleterious(0.04) unknown(0) TCGA-CV-5441-01 12 93134644 93134644 C A PLEKHG7 Missense_Mutation p.L7I 0.31 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 12 993327 993327 G A WNK1 Silent p.A1254A 0.31 TCGA-CV-5441-01 13 101910914 101910914 C T NALCN Silent p.R382R 0.38 TCGA-CV-5441-01 13 25744108 25744108 G T AMER2 Nonsense_Mutation p.Y550* 0.62 TCGA-CV-5441-01 13 26542750 26542750 G C ATP8A2 Missense_Mutation p.V1104L 0.38 deleterious(0) possibly_damaging(0.662) TCGA-CV-5441-01 13 41706215 41706215 A T KBTBD6 Missense_Mutation p.Y145N 0.46 deleterious(0) probably_damaging(0.996) TCGA-CV-5441-01 13 58208987 58208987 G T PCDH17 Silent p.L769L 0.42 TCGA-CV-5441-01 13 70549883 70549883 A G KLHL1 Silent p.S183S 0.46 TCGA-CV-5441-01 14 105353169 105353169 C T CEP170B Missense_Mutation p.R865W 0.10 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 14 105411998 105411998 C A AHNAK2 Missense_Mutation p.A3264S 0.32 benign(0.373) TCGA-CV-5441-01 14 105412823 105412823 C G AHNAK2 Missense_Mutation p.G2989R 0.32 benign(0.121) TCGA-CV-5441-01 14 106109618 106109618 G T IGHG2 Silent p.V301V 0.31 TCGA-CV-5441-01 14 106780623 106780623 G A IGHV4-28 Missense_Mutation p.P81S 0.27 tolerated(0.05) benign(0.387) TCGA-CV-5441-01 14 107211110 107211110 G A IGHV3-73 Missense_Mutation p.S60F 0.26 deleterious_low_confidence(0) benign(0.228) TCGA-CV-5441-01 14 23313040 23313040 C T MMP14 Silent p.D324D 0.25 TCGA-CV-5441-01 14 24884816 24884816 C G NYNRIN Silent p.P1287P 0.28 TCGA-CV-5441-01 14 30066892 30066892 G T PRKD1 Missense_Mutation p.P747T 0.30 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 14 34269516 34269516 C A NPAS3 Missense_Mutation p.P668Q 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CV-5441-01 14 37203722 37203723 - T SLC25A21 Frame_Shift_Ins p.R87Kfs*9 0.16 TCGA-CV-5441-01 14 47121008 47121008 T A RPL10L 5'UTR 0.32 TCGA-CV-5441-01 14 47530772 47530772 T A MDGA2 Missense_Mutation p.K402I 0.23 deleterious(0.05) possibly_damaging(0.898) TCGA-CV-5441-01 14 55448358 55448358 C A WDHD1 Missense_Mutation p.G655C 0.26 tolerated(0.09) benign(0.114) TCGA-CV-5441-01 14 59730201 59730201 C A DAAM1 Silent p.A2A 0.34 TCGA-CV-5441-01 14 59939674 59939674 T C L3HYPDH 3'UTR 0.29 TCGA-CV-5441-01 14 64891613 64891613 C T MTHFD1 Silent p.G273G 0.25 TCGA-CV-5441-01 14 67939994 67939994 C A TMEM229B 3'UTR 0.35 TCGA-CV-5441-01 14 70633591 70633591 A G SLC8A3 Missense_Mutation p.C517R 0.27 tolerated(0.35) benign(0) TCGA-CV-5441-01 14 72200507 72200507 A G SIPA1L1 Silent p.V1683V 0.31 TCGA-CV-5441-01 14 75150018 75150018 G A AREL1 Silent p.Y154Y 0.28 TCGA-CV-5441-01 14 77845409 77845409 G A SAMD15 Missense_Mutation p.V550I 0.30 deleterious(0) probably_damaging(0.992) TCGA-CV-5441-01 14 94100936 94100936 T A UNC79 Missense_Mutation p.L1752Q 0.28 deleterious_low_confidence(0) benign(0.094) TCGA-CV-5441-01 14 94845639 94845639 A T SERPINA1 Intron 0.44 TCGA-CV-5441-01 14 95080630 95080630 G C SERPINA3 5'UTR 0.50 TCGA-CV-5441-01 15 20488829 20488829 T C CHEK2P2 RNA 0.13 TCGA-CV-5441-01 15 23811400 23811400 G A MKRN3 Silent p.A157A 0.21 TCGA-CV-5441-01 15 23932095 23932095 C T NDN Silent p.P90P 0.31 TCGA-CV-5441-01 15 25440148 25440148 C A SNORD115-14 RNA 0.30 TCGA-CV-5441-01 15 31324988 31324988 G A TRPM1 Silent p.I969I 0.38 TCGA-CV-5441-01 15 38591587 38591587 C T SPRED1 Nonsense_Mutation p.R16* 0.32 TCGA-CV-5441-01 15 48055235 48055235 A T SEMA6D Silent p.I227I 0.16 TCGA-CV-5441-01 15 60745949 60745949 T A NARG2 Silent p.S326S 0.24 TCGA-CV-5441-01 15 62202492 62202492 A G VPS13C Missense_Mutation p.W2910R 0.26 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 15 67073771 67073771 C T SMAD6 Silent p.S463S 0.38 TCGA-CV-5441-01 15 78878992 78878993 - A CHRNA5 Frame_Shift_Ins p.N90Kfs*24 0.40 TCGA-CV-5441-01 15 89873428 89873428 G A POLG Silent p.L247L 0.10 TCGA-CV-5441-01 15 93528831 93528831 C T CHD2 Missense_Mutation p.P1114L 0.20 deleterious(0.02) benign(0.186) TCGA-CV-5441-01 16 15931989 15931989 C G MYH11 Missense_Mutation p.E41Q 0.29 probably_damaging(0.996) TCGA-CV-5441-01 16 20487096 20487096 G T ACSM2A Splice_Site p.X366_splice 0.29 TCGA-CV-5441-01 16 23847475 23847475 G T PRKCB 5'UTR 0.56 TCGA-CV-5441-01 16 24231346 24231346 C A PRKCB 3'UTR 0.33 TCGA-CV-5441-01 16 28995109 28995109 C T SPNS1 Silent p.I441I 0.39 TCGA-CV-5441-01 16 3487215 3487215 C A ZNF597 Missense_Mutation p.D162Y 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CV-5441-01 16 4475952 4475952 G T DNAJA3 Missense_Mutation p.G24C 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.664) TCGA-CV-5441-01 16 68598394 68598394 C T ZFP90 Silent p.L568L 0.31 TCGA-CV-5441-01 16 70530226 70530226 T A COG4 Missense_Mutation p.Q530H 0.17 tolerated(0.13) possibly_damaging(0.498) TCGA-CV-5441-01 16 75646689 75646689 C A ADAT1 Missense_Mutation p.W165C 0.29 tolerated(0.19) probably_damaging(0.975) TCGA-CV-5441-01 16 77375634 77375634 G C ADAMTS18 Silent p.P559P 0.27 TCGA-CV-5441-01 16 84024099 84024099 G T NECAB2 Missense_Mutation p.V154L 0.33 tolerated(0.27) probably_damaging(0.996) TCGA-CV-5441-01 17 10304007 10304007 T C MYH8 Silent p.E1145E 0.69 TCGA-CV-5441-01 17 27963640 27963640 T C SSH2 Silent p.E509E 0.19 TCGA-CV-5441-01 17 28380818 28380818 C A EFCAB5 Missense_Mutation p.Q616K 0.23 tolerated(0.39) benign(0.002) TCGA-CV-5441-01 17 35549233 35549233 C T ACACA Missense_Mutation p.R1405H 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-CV-5441-01 17 40265543 40265543 G A KAT2A 3'UTR 0.50 TCGA-CV-5441-01 17 40937377 40937377 G T WNK4 Silent p.P451P 0.33 TCGA-CV-5441-01 17 42513913 42513913 C A GPATCH8 Missense_Mutation p.G65V 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-5441-01 17 45785830 45785830 C A TBKBP1 Missense_Mutation p.Q315K 0.29 deleterious(0.01) possibly_damaging(0.814) TCGA-CV-5441-01 17 55183669 55183669 G A AKAP1 Missense_Mutation p.D282N 0.31 deleterious(0.04) benign(0.287) TCGA-CV-5441-01 17 64059162 64059162 C A CEP112 Missense_Mutation p.E331D 0.31 deleterious(0) benign(0.034) TCGA-CV-5441-01 17 67025355 67025355 T C ABCA9 Missense_Mutation p.K487E 0.40 deleterious(0.03) benign(0.072) TCGA-CV-5441-01 17 77768668 77768668 G T CBX8 Silent p.G312G 0.38 TCGA-CV-5441-01 17 7806008 7806008 G A CHD3 Silent p.T1170T 0.66 TCGA-CV-5441-01 17 7943265 7943265 G T ALOX15B Missense_Mutation p.R138L 0.52 deleterious(0) possibly_damaging(0.828) TCGA-CV-5441-01 17 7975970 7975971 - T ALOX12B 3'UTR 0.47 TCGA-CV-5441-01 18 13053023 13053023 G T CEP192 Silent p.T1041T 0.15 TCGA-CV-5441-01 18 346445 346445 G A COLEC12 Missense_Mutation p.R393C 0.72 deleterious(0.02) benign(0.007) TCGA-CV-5441-01 18 48248423 48248423 G C MAPK4 Missense_Mutation p.E269D 0.36 tolerated(0.19) benign(0.108) TCGA-CV-5441-01 18 5397093 5397093 G T EPB41L3 Missense_Mutation p.H935Q 0.67 tolerated(0.31) benign(0.004) TCGA-CV-5441-01 18 7037668 7037668 C T LAMA1 Missense_Mutation p.R549H 0.71 tolerated(0.51) benign(0.002) TCGA-CV-5441-01 18 77794529 77794529 C T RBFA Missense_Mutation p.R12C 0.50 tolerated(0.2) benign(0.001) TCGA-CV-5441-01 19 10078024 10078024 G T COL5A3 Missense_Mutation p.P1486Q 0.33 unknown(0) TCGA-CV-5441-01 19 10221172 10221172 G A PPAN Missense_Mutation p.E305K 0.22 tolerated(0.08) probably_damaging(0.997) TCGA-CV-5441-01 19 1105707 1105707 C G GPX4 Silent p.V125V 0.35 TCGA-CV-5441-01 19 11486219 11486219 C G SWSAP1 Missense_Mutation p.R73G 0.28 tolerated(0.08) benign(0.018) TCGA-CV-5441-01 19 14074050 14074050 C A RFX1 Missense_Mutation p.A870S 0.28 tolerated(0.08) probably_damaging(0.997) TCGA-CV-5441-01 19 15905710 15905710 C A OR10H5 Silent p.P284P 0.33 TCGA-CV-5441-01 19 15989674 15989674 G A CYP4F2 Silent p.R490R 0.18 TCGA-CV-5441-01 19 16861004 16861004 G A NWD1 Silent p.P517P 0.28 TCGA-CV-5441-01 19 17631872 17631872 G A PGLS Silent p.E253E 0.29 TCGA-CV-5441-01 19 22235400 22235400 C A ZNF257 5'UTR 0.26 TCGA-CV-5441-01 19 22235401 22235401 A G ZNF257 5'UTR 0.26 TCGA-CV-5441-01 19 22271667 22271667 A T ZNF257 Missense_Mutation p.Y372F 0.23 deleterious(0.04) benign(0.218) TCGA-CV-5441-01 19 2252344 2252344 C A JSRP1 Missense_Mutation p.G327V 0.36 deleterious(0.03) probably_damaging(0.991) TCGA-CV-5441-01 19 22586259 22586259 C A ZNF98 Missense_Mutation p.C29F 0.22 tolerated(0.06) probably_damaging(0.995) TCGA-CV-5441-01 19 23406046 23406046 C T ZNF724P Missense_Mutation p.G334D 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 19 24102416 24102416 G T ZNF726 Intron 0.36 TCGA-CV-5441-01 19 31025860 31025860 T C ZNF536 Silent p.T759T 0.32 TCGA-CV-5441-01 19 35435633 35435633 G A ZNF30 Missense_Mutation p.R589Q 0.35 deleterious(0.02) benign(0.136) TCGA-CV-5441-01 19 36381394 36381394 T A NFKBID Splice_Site p.X203_splice 0.36 TCGA-CV-5441-01 19 38610472 38610472 G T SIPA1L3 Missense_Mutation p.A940S 0.33 tolerated(1) benign(0.001) TCGA-CV-5441-01 19 39760161 39760161 C T IFNL2 Silent p.L102L 0.25 TCGA-CV-5441-01 19 40929371 40929371 G A SERTAD1 Missense_Mutation p.P28L 0.20 deleterious(0.03) benign(0.1) TCGA-CV-5441-01 19 45872213 45872213 G T ERCC2 Nonsense_Mutation p.S74* 0.27 TCGA-CV-5441-01 19 46376291 46376291 C T FOXA3 Missense_Mutation p.S343F 0.36 deleterious(0) benign(0.193) TCGA-CV-5441-01 19 4891219 4891219 G C ARRDC5 Missense_Mutation p.H290D 0.31 tolerated(0.31) benign(0.039) TCGA-CV-5441-01 19 49552205 49552205 G - CGB8 5'UTR 0.41 TCGA-CV-5441-01 19 49684706 49684706 C T TRPM4 Silent p.D417D 0.31 TCGA-CV-5441-01 19 50919882 50919882 G A POLD1 Missense_Mutation p.R990H 0.25 deleterious(0) probably_damaging(0.981) TCGA-CV-5441-01 19 52620044 52620044 G T ZNF616 Missense_Mutation p.Q125K 0.27 tolerated(0.17) benign(0.028) TCGA-CV-5441-01 19 53343753 53343753 C A ZNF468 3'UTR 0.21 TCGA-CV-5441-01 19 54515364 54515364 C A CACNG6 Missense_Mutation p.A235D 0.41 deleterious(0) benign(0.243) TCGA-CV-5441-01 19 55148089 55148089 C A LILRB1 Missense_Mutation p.Q600K 0.18 deleterious(0.03) benign(0.373) TCGA-CV-5441-01 19 56090061 56090061 C A ZNF579 Missense_Mutation p.Q315H 0.11 tolerated(0.12) benign(0.01) TCGA-CV-5441-01 19 56703218 56703218 C A ZSCAN5B Splice_Site p.X196_splice 0.31 TCGA-CV-5441-01 19 57176560 57176560 C A ZNF835 Nonsense_Mutation p.G3* 0.21 TCGA-CV-5441-01 19 7794150 7794150 A C CLEC4G 3'UTR 0.42 TCGA-CV-5441-01 19 990234 990234 C A WDR18 Missense_Mutation p.A156D 0.19 tolerated(0.37) benign(0.13) TCGA-CV-5441-01 1 10035807 10035807 G T NMNAT1 Missense_Mutation p.E91D 0.31 tolerated(0.36) benign(0.032) TCGA-CV-5441-01 1 1021283 1021283 G - C1orf159 Frame_Shift_Del p.R141Gfs*20 0.31 TCGA-CV-5441-01 1 103343706 103343706 C A COL11A1 Nonsense_Mutation p.E1764* 0.16 TCGA-CV-5441-01 1 118481110 118481110 G A WDR3 Missense_Mutation p.D170N 0.27 deleterious(0) probably_damaging(0.976) TCGA-CV-5441-01 1 144879382 144879382 C A PDE4DIP Missense_Mutation p.K1356N 0.15 deleterious(0) possibly_damaging(0.772) TCGA-CV-5441-01 1 148932902 148932902 C A RP11-14N7.2 RNA 0.06 TCGA-CV-5441-01 1 154516995 154516995 T A TDRD10 Splice_Site p.X266_splice 0.26 TCGA-CV-5441-01 1 154931794 154931794 G A PYGO2 Nonsense_Mutation p.Q228* 0.15 TCGA-CV-5441-01 1 155340374 155340374 C A ASH1L Missense_Mutation p.V2203L 0.39 deleterious_low_confidence(0.02) probably_damaging(0.963) TCGA-CV-5441-01 1 155629663 155629663 C A YY1AP1 Missense_Mutation p.G818W 0.19 tolerated_low_confidence(0.07) benign(0.042) TCGA-CV-5441-01 1 156639196 156639196 G A NES Missense_Mutation p.P1595L 0.31 deleterious(0) possibly_damaging(0.548) TCGA-CV-5441-01 1 157659649 157659649 G T FCRL3 Missense_Mutation p.S583R 0.21 deleterious(0.02) possibly_damaging(0.866) TCGA-CV-5441-01 1 16073407 16073407 T C TMEM82 Missense_Mutation p.V268A 0.59 deleterious(0.03) possibly_damaging(0.884) TCGA-CV-5441-01 1 17084550 17084550 C A MST1L RNA 0.10 TCGA-CV-5441-01 1 176853475 176853475 C A ASTN1 Nonsense_Mutation p.E1076* 0.31 TCGA-CV-5441-01 1 176853589 176853589 G C ASTN1 Missense_Mutation p.L1038V 0.37 tolerated(0.53) probably_damaging(0.941) TCGA-CV-5441-01 1 177247890 177247890 C T BRINP2 Missense_Mutation p.R402C 0.15 deleterious(0.01) possibly_damaging(0.828) TCGA-CV-5441-01 1 180240538 180240538 C G LHX4 Missense_Mutation p.R159G 0.13 deleterious(0) benign(0.316) TCGA-CV-5441-01 1 185833728 185833728 G C HMCN1 Missense_Mutation p.V156L 0.31 benign(0.045) TCGA-CV-5441-01 1 185878573 185878574 - A HMCN1 Frame_Shift_Ins p.S243Kfs*17 0.22 TCGA-CV-5441-01 1 19712005 19712005 G T CAPZB Missense_Mutation p.S70Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 1 204131245 204131245 G T REN Silent p.R49R 0.24 TCGA-CV-5441-01 1 205585757 205585757 T C ELK4 Missense_Mutation p.N405D 0.21 deleterious(0.01) benign(0.341) TCGA-CV-5441-01 1 207196627 207196627 G A C1orf116 Missense_Mutation p.P161L 0.32 deleterious(0.02) benign(0.065) TCGA-CV-5441-01 1 214542973 214542973 G C PTPN14 Missense_Mutation p.A1033G 0.19 deleterious(0.03) benign(0.274) TCGA-CV-5441-01 1 214557726 214557726 C T PTPN14 Missense_Mutation p.R491Q 0.21 deleterious(0.04) benign(0.116) TCGA-CV-5441-01 1 215179245 215179245 C - KCNK2 5'UTR 0.25 TCGA-CV-5441-01 1 2160689 2160689 A T SKI Nonsense_Mutation p.K162* 0.76 TCGA-CV-5441-01 1 216258096 216258096 T G USH2A Missense_Mutation p.N1704T 0.15 benign(0.045) TCGA-CV-5441-01 1 22205106 22205106 G A HSPG2 Missense_Mutation p.A841V 0.40 possibly_damaging(0.555) TCGA-CV-5441-01 1 234452395 234452395 C T SLC35F3 Silent p.Y292Y 0.33 TCGA-CV-5441-01 1 235295239 235295239 C T RBM34 Missense_Mutation p.R361H 0.15 deleterious(0.04) benign(0.22) TCGA-CV-5441-01 1 236882193 236882193 G - ACTN2 Splice_Site p.X82_splice 0.20 TCGA-CV-5441-01 1 237969512 237969512 C A RYR2 Missense_Mutation p.L4743I 0.21 possibly_damaging(0.874) TCGA-CV-5441-01 1 248039216 248039216 G T TRIM58 Missense_Mutation p.D296Y 0.13 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 1 248202460 248202460 G A OR2L2 Missense_Mutation p.M297I 0.16 tolerated(0.1) benign(0.002) TCGA-CV-5441-01 1 248262808 248262808 T C OR2L13 Missense_Mutation p.M44T 0.20 deleterious(0.01) possibly_damaging(0.694) TCGA-CV-5441-01 1 248402915 248402915 G A OR2M4 Missense_Mutation p.G229S 0.40 tolerated(0.9) benign(0.052) TCGA-CV-5441-01 1 248685532 248685532 C A OR2G6 Missense_Mutation p.N195K 0.26 deleterious(0.05) probably_damaging(0.993) TCGA-CV-5441-01 1 248790373 248790373 C A OR2T11 Missense_Mutation p.E19D 0.51 tolerated(0.13) benign(0.03) TCGA-CV-5441-01 1 36379547 36379547 C T AGO1 Missense_Mutation p.L563F 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 1 39720017 39720017 G T MACF1 Missense_Mutation p.Q140H 0.30 possibly_damaging(0.706) TCGA-CV-5441-01 1 43228142 43228142 T C LEPRE1 Missense_Mutation p.N157S 0.32 deleterious(0.05) possibly_damaging(0.57) TCGA-CV-5441-01 1 55599818 55599818 C T USP24 Silent p.R1102R 0.32 TCGA-CV-5441-01 1 57257960 57257960 C A C1orf168 Missense_Mutation p.G176W 0.36 deleterious(0) probably_damaging(0.981) TCGA-CV-5441-01 1 57420448 57420448 G C C8B Missense_Mutation p.D148E 0.28 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 1 6188634 6188634 T A CHD5 Missense_Mutation p.I1219F 0.29 tolerated_low_confidence(0.46) benign(0) TCGA-CV-5441-01 1 62954718 62954718 C A DOCK7 Missense_Mutation p.V1763F 0.24 deleterious(0) possibly_damaging(0.891) TCGA-CV-5441-01 1 67099824 67099824 C A SGIP1 Intron 0.19 TCGA-CV-5441-01 1 75005943 75005943 C A TNNI3K Missense_Mutation p.L894M 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.468) TCGA-CV-5441-01 1 78429830 78429830 C A FUBP1 Nonsense_Mutation p.E320* 0.30 TCGA-CV-5441-01 1 86591713 86591713 C A COL24A1 Missense_Mutation p.L102F 0.34 tolerated(0.27) possibly_damaging(0.741) TCGA-CV-5441-01 1 89726431 89726431 C A GBP5 Missense_Mutation p.A573S 0.24 deleterious(0.03) benign(0.334) TCGA-CV-5441-01 20 13839934 13839934 A G SEL1L2 Intron 0.34 TCGA-CV-5441-01 20 23017173 23017173 C A SSTR4 Silent p.L351L 0.38 TCGA-CV-5441-01 20 23017264 23017264 C T SSTR4 Missense_Mutation p.L382F 0.31 tolerated_low_confidence(0.06) benign(0.002) TCGA-CV-5441-01 20 2308958 2308958 C T TGM3 Missense_Mutation p.A427V 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 20 2411213 2411213 G T TGM6 Missense_Mutation p.K600N 0.26 deleterious(0) probably_damaging(0.991) TCGA-CV-5441-01 20 2592857 2592857 A G TMC2 Missense_Mutation p.I538M 0.24 tolerated(0.11) possibly_damaging(0.714) TCGA-CV-5441-01 20 31434486 31434486 G A MAPRE1 Silent p.K220K 0.29 TCGA-CV-5441-01 20 31685548 31685548 C A BPIFB4 Silent p.V508V 0.39 TCGA-CV-5441-01 20 34778267 34778267 G T EPB41L1 Missense_Mutation p.K365N 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 20 37464725 37464725 C A PPP1R16B Silent p.R53R 0.36 TCGA-CV-5441-01 20 41100930 41100930 G T PTPRT Missense_Mutation p.L476M 0.34 tolerated(0.05) benign(0.183) TCGA-CV-5441-01 20 41419980 41419980 C A PTPRT Missense_Mutation p.R114M 0.29 deleterious(0) possibly_damaging(0.819) TCGA-CV-5441-01 20 45129824 45129824 T C ZNF334 3'UTR 0.31 TCGA-CV-5441-01 20 45129826 45129826 C A ZNF334 3'UTR 0.29 TCGA-CV-5441-01 20 5166473 5166473 G A CDS2 Splice_Site p.X276_splice 0.31 TCGA-CV-5441-01 20 5283103 5283103 G T PROKR2 Silent p.I246I 0.33 TCGA-CV-5441-01 20 7866414 7866414 A C HAO1 Missense_Mutation p.L304R 0.28 deleterious(0) probably_damaging(0.997) TCGA-CV-5441-01 21 11039369 11039369 G T BAGE2 RNA 0.05 TCGA-CV-5441-01 21 22849700 22849700 A G NCAM2 Missense_Mutation p.Y662C 0.40 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 21 28306893 28306893 C A ADAMTS5 Missense_Mutation p.M527I 0.32 tolerated(0.27) benign(0.026) TCGA-CV-5441-01 21 30693704 30693704 G T BACH1 Missense_Mutation p.D35Y 0.24 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 21 31864055 31864055 C A KRTAP19-3 Missense_Mutation p.G74V 0.31 tolerated_low_confidence(0.72) unknown(0) TCGA-CV-5441-01 21 31864056 31864056 C A KRTAP19-3 Nonsense_Mutation p.G74* 0.31 TCGA-CV-5441-01 21 47537349 47537349 G A COL6A2 Silent p.K345K 0.25 TCGA-CV-5441-01 22 21975947 21975947 C A UBE2L3 Missense_Mutation p.P210T 0.23 deleterious(0) probably_damaging(0.982) TCGA-CV-5441-01 22 22868460 22868460 G A ZNF280A Nonsense_Mutation p.Q499* 0.33 TCGA-CV-5441-01 22 22869368 22869368 A C ZNF280A Missense_Mutation p.V196G 0.09 tolerated(0.39) benign(0.229) TCGA-CV-5441-01 22 23047205 23047205 T A IGLV3-22 Silent p.S81S 0.38 TCGA-CV-5441-01 22 37462243 37462243 G A TMPRSS6 Silent p.L771L 0.35 TCGA-CV-5441-01 22 37627347 37627347 G T RAC2 Missense_Mutation p.D124E 0.40 tolerated_low_confidence(0.83) benign(0.001) TCGA-CV-5441-01 22 37769436 37769436 G A ELFN2 Silent p.P713P 0.33 TCGA-CV-5441-01 22 39907350 39907350 C A MIEF1 Silent p.G17G 0.26 TCGA-CV-5441-01 22 46930098 46930098 C A CELSR1 Missense_Mutation p.L990F 0.35 deleterious(0.02) probably_damaging(0.99) TCGA-CV-5441-01 22 50279075 50279075 G T ZBED4 Missense_Mutation p.G589W 0.35 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 22 50899572 50899589 GCGCACCGCGCCCCACCT - SBF1 Splice_Site p.X989_splice 0.34 TCGA-CV-5441-01 22 51143509 51143509 G T SHANK3 Missense_Mutation p.G688W 0.24 probably_damaging(0.945) TCGA-CV-5441-01 2 109547447 109547447 C A EDAR Silent p.T8T 0.31 TCGA-CV-5441-01 2 116599915 116599915 T A DPP10 Missense_Mutation p.D799E 0.36 tolerated(0.24) benign(0.034) TCGA-CV-5441-01 2 11727549 11727549 G C GREB1 Intron 0.25 TCGA-CV-5441-01 2 121107382 121107382 G T INHBB Missense_Mutation p.D386Y 0.27 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 2 125284996 125284996 A G CNTNAP5 Missense_Mutation p.S537G 0.35 tolerated(0.06) probably_damaging(0.995) TCGA-CV-5441-01 2 141359046 141359046 T C LRP1B Missense_Mutation p.H2321R 0.25 benign(0.227) TCGA-CV-5441-01 2 149270611 149270611 C G MBD5 3'UTR 0.39 TCGA-CV-5441-01 2 155555407 155555407 G A KCNJ3 Silent p.K40K 0.34 TCGA-CV-5441-01 2 166618451 166618451 C A GALNT3 Missense_Mutation p.A268S 0.24 tolerated(0.06) probably_damaging(0.947) TCGA-CV-5441-01 2 168101077 168101077 T A XIRP2 Missense_Mutation p.F1059I 0.33 probably_damaging(1) TCGA-CV-5441-01 2 168106303 168106303 C A XIRP2 Missense_Mutation p.P2801T 0.39 benign(0.117) TCGA-CV-5441-01 2 170013897 170013897 G A LRP2 Silent p.D4001D 0.33 TCGA-CV-5441-01 2 172669945 172669945 C A SLC25A12 Missense_Mutation p.G359C 0.23 deleterious(0) benign(0.049) TCGA-CV-5441-01 2 175333771 175333771 T C GPR155 Missense_Mutation p.T351A 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 2 179462734 179462734 C A TTN Nonsense_Mutation p.E19055* 0.26 TCGA-CV-5441-01 2 179578813 179578813 C T TTN Missense_Mutation p.E8858K 0.28 TCGA-CV-5441-01 2 189852852 189852852 G T COL3A1 Missense_Mutation p.G192C 0.28 unknown(0) TCGA-CV-5441-01 2 196544871 196544871 G A SLC39A10 Silent p.A35A 0.34 TCGA-CV-5441-01 2 197184265 197184265 C A HECW2 Missense_Mutation p.S450I 0.27 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CV-5441-01 2 200173595 200173595 C T SATB2 Missense_Mutation p.R543H 0.04 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 2 207621698 207621698 C T MDH1B Missense_Mutation p.G113R 0.27 tolerated(0.17) benign(0.001) TCGA-CV-5441-01 2 207621966 207621966 C A MDH1B Missense_Mutation p.A89S 0.20 deleterious(0.02) benign(0.411) TCGA-CV-5441-01 2 21230877 21230877 T C APOB Missense_Mutation p.T2955A 0.30 benign(0.002) TCGA-CV-5441-01 2 215279018 215279018 G A VWC2L Missense_Mutation p.G34D 0.35 deleterious(0.04) benign(0.334) TCGA-CV-5441-01 2 215843554 215843554 C T ABCA12 Missense_Mutation p.G1651S 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-CV-5441-01 2 219209737 219209737 C A PNKD 3'UTR 0.14 TCGA-CV-5441-01 2 225740756 225740756 C A DOCK10 Silent p.L310L 0.18 TCGA-CV-5441-01 2 226446802 226446802 G A NYAP2 Silent p.P223P 0.07 TCGA-CV-5441-01 2 232390072 232390072 G C NMUR1 Missense_Mutation p.S321R 0.31 deleterious(0) probably_damaging(0.991) TCGA-CV-5441-01 2 239040038 239040038 G C ESPNL Missense_Mutation p.E895Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-CV-5441-01 2 23977593 23977593 G A ATAD2B Missense_Mutation p.T1377M 0.36 tolerated(0.13) benign(0.003) TCGA-CV-5441-01 2 29519791 29519791 G T ALK Missense_Mutation p.Q594K 0.33 tolerated(0.36) benign(0.247) TCGA-CV-5441-01 2 31489393 31489393 C T EHD3 Silent p.P477P 0.30 TCGA-CV-5441-01 2 31805986 31805986 C A SRD5A2 RNA 0.42 TCGA-CV-5441-01 2 48059803 48059804 - T FBXO11 Frame_Shift_Ins p.C390Mfs*3 0.29 TCGA-CV-5441-01 2 48874048 48874048 G A STON1-GTF2A1L Missense_Mutation p.S986N 0.30 tolerated(0.29) benign(0.122) TCGA-CV-5441-01 2 49381449 49381449 C G FSHR Missense_Mutation p.K36N 0.29 tolerated(0.28) benign(0.008) TCGA-CV-5441-01 2 63631467 63631467 C T WDPCP Missense_Mutation p.S384N 0.34 tolerated(0.09) benign(0.022) TCGA-CV-5441-01 2 74684871 74684871 G C INO80B Silent p.P317P 0.29 TCGA-CV-5441-01 2 75426131 75426131 G A TACR1 5'UTR 0.28 TCGA-CV-5441-01 2 79349244 79349244 C A REG1A Missense_Mutation p.P105H 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-CV-5441-01 2 79349245 79349245 C A REG1A Silent p.P105P 0.31 TCGA-CV-5441-01 2 80530249 80530249 G T LRRTM1 Silent p.L232L 0.34 TCGA-CV-5441-01 2 80530450 80530450 C G LRRTM1 Silent p.T165T 0.29 TCGA-CV-5441-01 2 80816488 80816488 A G CTNNA2 Missense_Mutation p.I689M 0.30 tolerated(0.23) benign(0.106) TCGA-CV-5441-01 2 84784995 84784995 G A DNAH6 Missense_Mutation p.G580E 0.29 deleterious(0.01) benign(0.271) TCGA-CV-5441-01 2 85570275 85570275 G C RETSAT 3'UTR 0.18 TCGA-CV-5441-01 2 8871438 8871438 C G KIDINS220 Silent p.A1576A 0.30 TCGA-CV-5441-01 2 89185363 89185363 C A IGKV4-1 Nonsense_Mutation p.Y19* 0.26 TCGA-CV-5441-01 2 89384911 89384911 C T IGKV3-15 Missense_Mutation p.G36E 0.29 deleterious(0.01) benign(0.139) TCGA-CV-5441-01 2 96260164 96260164 G T TRIM43 Missense_Mutation p.E131D 0.30 tolerated(0.22) benign(0.094) TCGA-CV-5441-01 2 98351166 98351166 G T ZAP70 Missense_Mutation p.R358L 0.51 tolerated(0.07) benign(0.164) TCGA-CV-5441-01 3 109049520 109049520 G T DPPA4 Missense_Mutation p.P177H 0.27 deleterious(0.02) benign(0.099) TCGA-CV-5441-01 3 114069727 114069727 G T ZBTB20 Silent p.R400R 0.32 TCGA-CV-5441-01 3 121972885 121972885 G C CASR 5'UTR 0.50 TCGA-CV-5441-01 3 129289977 129289977 C T PLXND1 Missense_Mutation p.R1169H 0.25 tolerated(0.4) benign(0.001) TCGA-CV-5441-01 3 138025304 138025304 C A NME9 Missense_Mutation p.C99F 0.34 deleterious(0.02) possibly_damaging(0.637) TCGA-CV-5441-01 3 140122626 140122626 G - CLSTN2 Frame_Shift_Del p.G130Vfs*21 0.30 TCGA-CV-5441-01 3 147127954 147127954 G A ZIC1 Missense_Mutation p.A19T 0.29 tolerated_low_confidence(1) benign(0) TCGA-CV-5441-01 3 16268961 16268961 G T GALNT15 Missense_Mutation p.R625L 0.32 tolerated(0.39) benign(0.268) TCGA-CV-5441-01 3 164907542 164907542 G C SLITRK3 Silent p.P359P 0.27 TCGA-CV-5441-01 3 170150565 170150565 C A CLDN11 3'UTR 0.32 TCGA-CV-5441-01 3 170216503 170216503 C A SLC7A14 Missense_Mutation p.G238W 0.29 tolerated(0.19) possibly_damaging(0.838) TCGA-CV-5441-01 3 172835328 172835329 - T SPATA16 Frame_Shift_Ins p.M65Nfs*12 0.28 TCGA-CV-5441-01 3 173997336 173997336 C A NLGN1 Silent p.I515I 0.33 TCGA-CV-5441-01 3 184076565 184076565 C T CLCN2 Missense_Mutation p.R86K 0.25 tolerated(1) benign(0.012) TCGA-CV-5441-01 3 184294701 184294701 C - EPHB3 Frame_Shift_Del p.R363Gfs*43 0.25 TCGA-CV-5441-01 3 194947466 194947466 C T XXYLT1 Silent p.S208S 0.06 TCGA-CV-5441-01 3 196541368 196541368 G - PAK2 Frame_Shift_Del p.S330Hfs*6 0.25 TCGA-CV-5441-01 3 3067852 3067852 C A CNTN4 Missense_Mutation p.P518Q 0.26 tolerated(0.1) probably_damaging(0.995) TCGA-CV-5441-01 3 36524549 36524549 G A STAC Missense_Mutation p.D152N 0.26 tolerated(0.56) probably_damaging(0.957) TCGA-CV-5441-01 3 39307932 39307932 A T CX3CR1 Silent p.I55I 0.27 TCGA-CV-5441-01 3 47147518 47147518 T C SETD2 Missense_Mutation p.H1603R 0.23 deleterious(0) possibly_damaging(0.832) TCGA-CV-5441-01 3 48896061 48896061 G C SLC25A20 Missense_Mutation p.P241R 0.18 deleterious(0) probably_damaging(0.976) TCGA-CV-5441-01 3 49755534 49755534 G A AMIGO3 Silent p.V455V 0.33 TCGA-CV-5441-01 3 49935550 49935550 C A MST1R Missense_Mutation p.G605V 0.29 deleterious(0.02) probably_damaging(0.949) TCGA-CV-5441-01 3 56330328 56330328 G A ERC2 Missense_Mutation p.R265W 0.29 deleterious(0) probably_damaging(0.954) TCGA-CV-5441-01 3 73433074 73433074 C A PDZRN3 Missense_Mutation p.Q881H 0.30 tolerated(0.06) probably_damaging(0.982) TCGA-CV-5441-01 3 77147180 77147180 A T ROBO2 Missense_Mutation p.Q42L 0.32 tolerated(1) unknown(0) TCGA-CV-5441-01 3 77695277 77695277 A G ROBO2 3'UTR 0.17 TCGA-CV-5441-01 3 88202621 88202621 G T C3orf38 Missense_Mutation p.Q125H 0.27 tolerated(0.09) possibly_damaging(0.632) TCGA-CV-5441-01 4 113198952 113198952 T G TIFA 3'UTR 0.19 TCGA-CV-5441-01 4 156860668 156860668 C G CTSO Missense_Mutation p.S136T 0.56 deleterious(0.01) possibly_damaging(0.458) TCGA-CV-5441-01 4 162841665 162841665 C A FSTL5 Silent p.V100V 0.61 TCGA-CV-5441-01 4 162841675 162841675 T C FSTL5 Missense_Mutation p.Y97C 0.63 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 4 189012438 189012438 T A TRIML2 3'UTR 0.77 TCGA-CV-5441-01 4 2175683 2175683 C G POLN Missense_Mutation p.G458A 0.54 deleterious(0.04) possibly_damaging(0.856) TCGA-CV-5441-01 4 43022369 43022369 A T GRXCR1 Splice_Site p.X210_splice 0.60 TCGA-CV-5441-01 4 46252598 46252598 C T GABRA2 Missense_Mutation p.M361I 0.07 tolerated(0.66) benign(0.001) TCGA-CV-5441-01 4 62813846 62813846 G A LPHN3 Missense_Mutation p.C818Y 0.62 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 4 62845283 62845283 C A LPHN3 Missense_Mutation p.H868Q 0.63 tolerated(0.29) benign(0.045) TCGA-CV-5441-01 4 89199527 89199527 C T PPM1K Missense_Mutation p.R70H 0.54 deleterious(0) probably_damaging(0.991) TCGA-CV-5441-01 4 91549260 91549260 G T CCSER1 Silent p.A603A 0.60 TCGA-CV-5441-01 5 106763036 106763036 C A EFNA5 Missense_Mutation p.W100C 0.24 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 5 106763037 106763037 C A EFNA5 Missense_Mutation p.W100L 0.24 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 5 130897714 130897715 - T RAPGEF6 Frame_Shift_Ins p.R103Kfs*4 0.36 TCGA-CV-5441-01 5 13735314 13735314 G A DNAH5 Missense_Mutation p.T3896I 0.30 possibly_damaging(0.507) TCGA-CV-5441-01 5 13865914 13865914 C A DNAH5 Missense_Mutation p.K1406N 0.34 possibly_damaging(0.728) TCGA-CV-5441-01 5 139908268 139908268 C T ANKHD1 Silent p.L1913L 0.38 TCGA-CV-5441-01 5 140530659 140530659 G A PCDHB6 Missense_Mutation p.G274E 0.27 deleterious(0) possibly_damaging(0.803) TCGA-CV-5441-01 5 140595270 140595270 G T PCDHB13 Missense_Mutation p.Q525H 0.54 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-CV-5441-01 5 140595271 140595271 G T PCDHB13 Missense_Mutation p.G526W 0.55 deleterious_low_confidence(0) benign(0.003) TCGA-CV-5441-01 5 140763189 140763189 C T PCDHGA7 Silent p.V241V 0.32 TCGA-CV-5441-01 5 140802351 140802351 A T PCDHGA11 Missense_Mutation p.Q519H 0.25 tolerated_low_confidence(0.26) benign(0.016) TCGA-CV-5441-01 5 140868945 140868945 G C PCDHGC5 Silent p.G46G 0.19 TCGA-CV-5441-01 5 148389880 148389880 A T SH3TC2 Missense_Mutation p.F1094I 0.46 deleterious(0) probably_damaging(0.964) TCGA-CV-5441-01 5 150056389 150056389 A T MYOZ3 Missense_Mutation p.R236S 0.30 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 5 150920141 150920141 G C FAT2 Missense_Mutation p.P3009R 0.53 probably_damaging(1) TCGA-CV-5441-01 5 154394078 154394078 T C KIF4B Missense_Mutation p.I220T 0.32 deleterious(0) benign(0.261) TCGA-CV-5441-01 5 16067854 16067854 C A MARCH11 Missense_Mutation p.W312L 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-CV-5441-01 5 168195150 168195150 C A SLIT3 Intron 0.33 TCGA-CV-5441-01 5 168244400 168244400 C A SLIT3 Missense_Mutation p.R233L 0.23 tolerated(0.06) probably_damaging(0.998) TCGA-CV-5441-01 5 176700778 176700779 AT - NSD1 Frame_Shift_Del p.I1873Kfs*18 0.36 TCGA-CV-5441-01 5 177171895 177171895 C A FAM153A Silent p.A34A 0.11 TCGA-CV-5441-01 5 21751671 21751671 T G CDH12 3'UTR 0.50 TCGA-CV-5441-01 5 23527544 23527544 C A PRDM9 Silent p.R783R 0.29 TCGA-CV-5441-01 5 37697932 37697932 C A WDR70 Intron 0.28 TCGA-CV-5441-01 5 39377090 39377090 G A DAB2 Missense_Mutation p.P600L 0.24 deleterious(0) benign(0.341) TCGA-CV-5441-01 5 39381569 39381569 G T DAB2 Silent p.P497P 0.25 TCGA-CV-5441-01 5 40853333 40853333 G A CARD6 Missense_Mutation p.M633I 0.04 tolerated(0.1) benign(0.056) TCGA-CV-5441-01 5 41004450 41004450 C A MROH2B Missense_Mutation p.D1398Y 0.35 deleterious(0) probably_damaging(0.963) TCGA-CV-5441-01 5 41382389 41382389 G T PLCXD3 Missense_Mutation p.F117L 0.33 deleterious(0.01) probably_damaging(0.963) TCGA-CV-5441-01 5 75936852 75936852 G T IQGAP2 Missense_Mutation p.G673V 0.31 deleterious(0.04) probably_damaging(0.978) TCGA-CV-5441-01 5 76703252 76703252 C A PDE8B Missense_Mutation p.H445Q 0.25 tolerated(0.06) probably_damaging(0.997) TCGA-CV-5441-01 5 7706876 7706876 G A ADCY2 Missense_Mutation p.G377R 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-CV-5441-01 5 7757586 7757586 C G ADCY2 Missense_Mutation p.L661V 0.23 tolerated(0.51) benign(0.007) TCGA-CV-5441-01 5 92929334 92929334 A T NR2F1 Missense_Mutation p.E353V 0.22 deleterious(0.03) possibly_damaging(0.728) TCGA-CV-5441-01 6 117825024 117825024 A G DCBLD1 Silent p.E69E 0.15 TCGA-CV-5441-01 6 118635271 118635271 C A SLC35F1 Silent p.A361A 0.15 TCGA-CV-5441-01 6 125614026 125614026 T A HDDC2 Silent p.L113L 0.56 TCGA-CV-5441-01 6 126210575 126210575 G T NCOA7 Missense_Mutation p.V459L 0.20 tolerated_low_confidence(0.35) benign(0.001) TCGA-CV-5441-01 6 131946091 131946091 A G MED23 Silent p.F66F 0.17 TCGA-CV-5441-01 6 132713397 132713397 C A MOXD1 Intron 0.27 TCGA-CV-5441-01 6 144779941 144779941 G T UTRN Nonsense_Mutation p.E774* 0.52 TCGA-CV-5441-01 6 152469434 152469434 T A SYNE1 Missense_Mutation p.H8241L 0.40 benign(0.004) TCGA-CV-5441-01 6 152623106 152623106 G A SYNE1 Silent p.T5813T 0.19 TCGA-CV-5441-01 6 152665308 152665308 G T SYNE1 Missense_Mutation p.L4045M 0.54 possibly_damaging(0.826) TCGA-CV-5441-01 6 152673332 152673332 C G SYNE1 Missense_Mutation p.V3804L 0.53 benign(0.027) TCGA-CV-5441-01 6 152757237 152757237 C A SYNE1 Splice_Site p.X1384_splice 0.56 TCGA-CV-5441-01 6 157469762 157469762 C G ARID1B Missense_Mutation p.N852K 0.15 probably_damaging(0.989) TCGA-CV-5441-01 6 157470017 157470018 TG - ARID1B Frame_Shift_Del p.V938Efs*3 0.52 TCGA-CV-5441-01 6 27925796 27925796 C T OR2B6 Silent p.L260L 0.64 TCGA-CV-5441-01 6 29691698 29691698 G A HLA-F Missense_Mutation p.E110K 0.91 deleterious_low_confidence(0.03) possibly_damaging(0.896) TCGA-CV-5441-01 6 32782378 32782378 A T HLA-DOB Missense_Mutation p.V121E 0.61 tolerated(0.05) benign(0.075) TCGA-CV-5441-01 6 33254975 33254975 T C WDR46 Missense_Mutation p.D303G 0.67 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 6 36104684 36104684 G T MAPK13 Missense_Mutation p.M213I 0.53 deleterious(0) probably_damaging(0.99) TCGA-CV-5441-01 6 38877379 38877379 G T DNAH8 Missense_Mutation p.R2983M 0.59 possibly_damaging(0.706) TCGA-CV-5441-01 6 45405777 45405777 G T RUNX2 Missense_Mutation p.R225L 0.60 deleterious(0) possibly_damaging(0.75) TCGA-CV-5441-01 6 54806055 54806055 G A FAM83B Silent p.K762K 0.24 TCGA-CV-5441-01 6 76124636 76124636 C A FILIP1 Missense_Mutation p.C18F 0.44 tolerated(0.53) benign(0.008) TCGA-CV-5441-01 6 79770397 79770397 G T PHIP Missense_Mutation p.R110S 0.45 deleterious(0) probably_damaging(0.931) TCGA-CV-5441-01 6 88854007 88854007 C T CNR1 Silent p.V329V 0.43 TCGA-CV-5441-01 7 100280797 100280797 C G GIGYF1 Silent p.V750V 0.31 TCGA-CV-5441-01 7 103290782 103290782 G T RELN Missense_Mutation p.N647K 0.22 tolerated(0.94) benign(0.031) TCGA-CV-5441-01 7 105603804 105603804 A G CDHR3 Missense_Mutation p.M14V 0.34 tolerated(1) benign(0) TCGA-CV-5441-01 7 106507993 106507993 A T PIK3CG Splice_Site 0.26 TCGA-CV-5441-01 7 106509367 106509367 C A PIK3CG Missense_Mutation p.S454Y 0.27 deleterious(0.04) benign(0.012) TCGA-CV-5441-01 7 106509368 106509368 C A PIK3CG Silent p.S454S 0.28 TCGA-CV-5441-01 7 11675973 11675973 C A THSD7A Missense_Mutation p.R269L 0.33 deleterious(0) possibly_damaging(0.706) TCGA-CV-5441-01 7 122787212 122787212 C T SLC13A1 Splice_Site p.X271_splice 0.48 TCGA-CV-5441-01 7 122787213 122787213 G A SLC13A1 Missense_Mutation p.T271I 0.49 tolerated(0.15) benign(0.013) TCGA-CV-5441-01 7 124387211 124387211 T A GPR37 Missense_Mutation p.S404C 0.30 deleterious(0.02) possibly_damaging(0.895) TCGA-CV-5441-01 7 126079095 126079095 G A GRM8 3'UTR 0.10 TCGA-CV-5441-01 7 127670179 127670179 G A LRRC4 Missense_Mutation p.S172F 0.33 deleterious(0) probably_damaging(0.972) TCGA-CV-5441-01 7 134225940 134225940 T C AKR1B10 3'UTR 0.38 TCGA-CV-5441-01 7 141719028 141719028 G A MGAM Nonsense_Mutation p.W119* 0.25 TCGA-CV-5441-01 7 141765554 141765554 T A MGAM Intron 0.29 TCGA-CV-5441-01 7 142378920 142378920 A C MTRNR2L6 3'Flank 0.29 TCGA-CV-5441-01 7 143028713 143028713 G A CLCN1 Silent p.K378K 0.28 TCGA-CV-5441-01 7 149473575 149473575 G A ZNF467 5'Flank 0.42 TCGA-CV-5441-01 7 20449331 20449331 A T ITGB8 Missense_Mutation p.Q706L 0.31 tolerated(0.56) benign(0.048) TCGA-CV-5441-01 7 23205333 23205333 A G KLHL7 Missense_Mutation p.D318G 0.35 tolerated(0.24) possibly_damaging(0.57) TCGA-CV-5441-01 7 36478884 36478884 A T ANLN Missense_Mutation p.E985D 0.37 deleterious(0) benign(0.036) TCGA-CV-5441-01 7 38505100 38505100 G C AMPH Missense_Mutation p.A239G 0.54 tolerated(0.66) probably_damaging(0.956) TCGA-CV-5441-01 7 43400528 43400528 G T HECW1 Silent p.G168G 0.23 TCGA-CV-5441-01 7 53103940 53103940 C T POM121L12 Silent p.F192F 0.30 TCGA-CV-5441-01 7 74470176 74470176 C A WBSCR16 Nonsense_Mutation p.G355* 0.35 TCGA-CV-5441-01 7 81693671 81693671 C G CACNA2D1 Splice_Site p.X243_splice 0.27 TCGA-CV-5441-01 7 82457236 82457236 G T PCLO Missense_Mutation p.P4766T 0.19 unknown(0) TCGA-CV-5441-01 7 96650315 96650315 C T DLX5 Missense_Mutation p.M201I 0.28 tolerated(1) benign(0.38) TCGA-CV-5441-01 8 105105870 105105870 A T RIMS2 Intron 0.64 TCGA-CV-5441-01 8 110453596 110453596 G - PKHD1L1 Frame_Shift_Del p.D1400Ifs*6 0.18 TCGA-CV-5441-01 8 113326813 113326813 G A CSMD3 Missense_Mutation p.S2465F 0.48 deleterious(0) probably_damaging(0.996) TCGA-CV-5441-01 8 113504751 113504751 G T CSMD3 Missense_Mutation p.P1749T 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-CV-5441-01 8 117954972 117954972 G T AARD 3'UTR 0.15 TCGA-CV-5441-01 8 139380222 139380222 G A FAM135B Missense_Mutation p.S2F 0.43 deleterious(0) possibly_damaging(0.553) TCGA-CV-5441-01 8 139620234 139620234 T G COL22A1 Splice_Site p.X1327_splice 0.15 TCGA-CV-5441-01 8 140630763 140630763 G A KCNK9 Missense_Mutation p.A288V 0.55 tolerated(0.07) benign(0.018) TCGA-CV-5441-01 8 143381940 143381940 C A TSNARE1 Missense_Mutation p.M399I 0.08 tolerated(0.4) benign(0.001) TCGA-CV-5441-01 8 27311740 27311740 C T PTK2B Missense_Mutation p.R889W 0.53 deleterious(0) possibly_damaging(0.832) TCGA-CV-5441-01 8 27668593 27668593 C T PBK Silent p.V218V 0.46 TCGA-CV-5441-01 8 6366351 6366351 G C ANGPT2 Intron 0.07 TCGA-CV-5441-01 8 69633639 69633639 C A C8orf34 Missense_Mutation p.D457E 0.48 tolerated(0.83) benign(0.003) TCGA-CV-5441-01 8 71646336 71646336 G T XKR9 Missense_Mutation p.V267F 0.45 deleterious(0) probably_damaging(0.929) TCGA-CV-5441-01 8 72973870 72973870 T C TRPA1 Missense_Mutation p.M312V 0.53 tolerated(0.18) benign(0.033) TCGA-CV-5441-01 8 85799925 85799925 C A RALYL Missense_Mutation p.P271T 0.52 tolerated(0.15) benign(0.217) TCGA-CV-5441-01 8 85799926 85799926 C A RALYL Missense_Mutation p.P271H 0.51 tolerated(0.07) benign(0.009) TCGA-CV-5441-01 8 92307834 92307834 C A SLC26A7 Missense_Mutation p.T127N 0.07 deleterious(0.05) possibly_damaging(0.732) TCGA-CV-5441-01 9 112705742 112705742 A G PALM2 3'UTR 0.23 TCGA-CV-5441-01 9 125315759 125315759 C A OR1N2 Missense_Mutation p.T104N 0.35 deleterious(0.04) benign(0.002) TCGA-CV-5441-01 9 139407552 139407552 C - NOTCH1 Frame_Shift_Del p.S797Pfs*5 0.33 TCGA-CV-5441-01 9 140108321 140108321 A G NDOR1 Missense_Mutation p.H134R 0.64 deleterious(0) probably_damaging(0.972) TCGA-CV-5441-01 9 27561618 27561620 ATC - C9orf72 In_Frame_Del p.D210del 0.22 TCGA-CV-5441-01 9 312083 312083 G A DOCK8 Missense_Mutation p.E220K 0.36 deleterious(0) benign(0.31) TCGA-CV-5441-01 9 32989950 32989950 C A APTX Intron 0.39 TCGA-CV-5441-01 9 35869982 35869982 C G OR13J1 Silent p.R139R 0.36 TCGA-CV-5441-01 9 70177139 70177139 G T FOXD4L5 Missense_Mutation p.P282Q 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-CV-5441-01 9 713363 713363 T C KANK1 Missense_Mutation p.L866P 0.49 deleterious(0) possibly_damaging(0.904) TCGA-CV-5441-01 9 71503929 71503929 G A PIP5K1B Silent p.L117L 0.29 TCGA-CV-5441-01 9 71845118 71845118 G T TJP2 Missense_Mutation p.E578D 0.40 deleterious(0.04) possibly_damaging(0.755) TCGA-CV-5441-01 9 75445586 75445586 G T TMC1 Missense_Mutation p.A750S 0.19 tolerated(0.45) unknown(0) TCGA-CV-5441-01 9 79635087 79635087 C A FOXB2 Missense_Mutation p.P173T 0.36 tolerated_low_confidence(0.11) unknown(0) TCGA-CV-5441-01 9 84534417 84534417 C A SPATA31D5P RNA 0.38 TCGA-CV-5441-01 9 91616672 91616672 C T S1PR3 Missense_Mutation p.S186F 0.26 deleterious(0) probably_damaging(1) TCGA-CV-5441-01 9 93606272 93606273 - G SYK Frame_Shift_Ins p.M34Hfs*3 0.45 TCGA-CV-5441-01 X 11783734 11783734 C A MSL3 Missense_Mutation p.R353S 0.57 deleterious(0.03) probably_damaging(0.935) TCGA-CV-5441-01 X 123504071 123504071 C A SH2D1A Missense_Mutation p.L83I 0.66 deleterious(0) probably_damaging(0.999) TCGA-CV-5441-01 X 140995750 140995750 C T MAGEC1 Missense_Mutation p.P854S 0.56 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-5441-01 X 148037568 148037568 G C AFF2 Missense_Mutation p.D665H 0.54 deleterious(0.01) possibly_damaging(0.797) TCGA-CV-5441-01 X 19008855 19008855 G T GPR64 3'UTR 0.55 TCGA-CV-5441-01 X 30237175 30237175 C A MAGEB2 Missense_Mutation p.L160I 0.70 tolerated(0.56) benign(0.123) TCGA-CV-5441-01 X 39933957 39933957 T A BCOR Silent p.S214S 0.72 TCGA-CV-5441-01 X 40513656 40513656 G A MED14 Silent p.N1417N 0.73 TCGA-CV-5441-01 X 44733171 44733172 - G KDM6A Frame_Shift_Ins p.L56Pfs*9 0.56 TCGA-CV-5441-01 X 51151314 51151314 T A CXorf67 Silent p.P482P 0.58 TCGA-CV-5441-01 X 62570269 62570269 G C SPIN4 Missense_Mutation p.R144G 0.61 deleterious(0) possibly_damaging(0.905) TCGA-CV-5441-01 X 70467681 70467681 T G ZMYM3 Missense_Mutation p.Q684P 0.78 deleterious(0.01) probably_damaging(0.995) TCGA-CV-5441-01 X 70836725 70836725 G A CXCR3 Silent p.N246N 0.64 TCGA-CV-5441-01 X 73811532 73811532 C T RLIM Missense_Mutation p.D540N 0.59 tolerated(0.09) possibly_damaging(0.453) TCGA-CV-5442-01 10 108536327 108536327 C T SORCS1 Missense_Mutation p.E284K 0.36 deleterious(0) possibly_damaging(0.747) TCGA-CV-5442-01 10 112362632 112362632 C T SMC3 Missense_Mutation p.S1116L 0.22 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 10 113932772 113932772 G A GPAM Nonsense_Mutation p.Q205* 0.31 TCGA-CV-5442-01 10 24896476 24896476 G C ARHGAP21 Nonsense_Mutation p.S879* 0.37 TCGA-CV-5442-01 10 26500926 26500926 C T MYO3A 3'UTR 0.25 TCGA-CV-5442-01 10 54074713 54074713 G A DKK1 Missense_Mutation p.G92S 0.36 tolerated(0.32) benign(0.006) TCGA-CV-5442-01 10 70706381 70706381 G C DDX50 Missense_Mutation p.D737H 0.41 deleterious_low_confidence(0.02) unknown(0) TCGA-CV-5442-01 11 101342884 101342884 G A TRPC6 Missense_Mutation p.S730L 0.35 deleterious(0) probably_damaging(0.989) TCGA-CV-5442-01 11 114453064 114453064 G A NXPE4 Missense_Mutation p.S259F 0.41 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 11 133712412 133712412 G C SPATA19 Missense_Mutation p.I135M 0.40 deleterious(0.05) benign(0) TCGA-CV-5442-01 11 2428395 2428395 G A TRPM5 Silent p.L1024L 0.48 TCGA-CV-5442-01 11 28057782 28057782 T C KIF18A Missense_Mutation p.N793S 0.44 tolerated(0.33) benign(0.009) TCGA-CV-5442-01 11 4615302 4615302 A T OR52I1 Missense_Mutation p.T12S 0.05 tolerated(0.7) benign(0.003) TCGA-CV-5442-01 11 48347158 48347158 G T OR4C3 Silent p.L222L 0.27 TCGA-CV-5442-01 11 7111451 7111451 G A RBMXL2 Missense_Mutation p.R367Q 0.29 tolerated(0.36) unknown(0) TCGA-CV-5442-01 11 74351802 74351802 G C POLD3 Missense_Mutation p.Q464H 0.33 deleterious(0.03) probably_damaging(0.926) TCGA-CV-5442-01 11 9830613 9830613 G C SBF2 Intron 0.48 TCGA-CV-5442-01 12 101587457 101587457 C T SLC5A8 Missense_Mutation p.G213E 0.44 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 12 121880818 121880818 C T KDM2B Missense_Mutation p.E861K 0.47 tolerated_low_confidence(0.06) benign(0.002) TCGA-CV-5442-01 12 124934366 124934366 G C NCOR2 Missense_Mutation p.I270M 0.35 unknown(0) TCGA-CV-5442-01 12 132636125 132636125 C T NOC4L Silent p.F390F 0.60 TCGA-CV-5442-01 12 16052888 16052888 G C STRAP Missense_Mutation p.D276H 0.36 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 12 3662836 3662836 C G PRMT8 Missense_Mutation p.S146C 0.39 deleterious(0.03) probably_damaging(0.992) TCGA-CV-5442-01 12 41386958 41386958 G A CNTN1 Missense_Mutation p.R667K 0.40 tolerated(0.71) benign(0.001) TCGA-CV-5442-01 12 48137435 48137435 T G RAPGEF3 Missense_Mutation p.D568A 0.36 deleterious(0.02) probably_damaging(1) TCGA-CV-5442-01 12 53647820 53647820 C A MFSD5 Silent p.R508R 0.35 TCGA-CV-5442-01 12 53675381 53675381 C T ESPL1 Nonsense_Mutation p.R864* 0.38 TCGA-CV-5442-01 12 53856277 53856278 - C PCBP2 Frame_Shift_Ins p.K176Efs*46 0.41 TCGA-CV-5442-01 12 55420738 55420738 G C NEUROD4 Missense_Mutation p.G172A 0.36 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 12 5603698 5603698 G A NTF3 Silent p.L119L 0.15 TCGA-CV-5442-01 12 8618142 8618142 G A CLEC6A Missense_Mutation p.E96K 0.41 tolerated(0.53) benign(0.006) TCGA-CV-5442-01 12 88442938 88442938 G A C12orf29 3'UTR 0.36 TCGA-CV-5442-01 13 100192968 100192968 G C TM9SF2 Missense_Mutation p.E277Q 0.39 tolerated(0.15) possibly_damaging(0.58) TCGA-CV-5442-01 13 110438062 110438062 G C IRS2 Missense_Mutation p.I113M 0.23 deleterious(0) probably_damaging(0.996) TCGA-CV-5442-01 13 110838797 110838797 G A COL4A1 Missense_Mutation p.A611V 0.47 possibly_damaging(0.689) TCGA-CV-5442-01 13 29008329 29008329 C G FLT1 Missense_Mutation p.G181A 0.20 deleterious(0.01) possibly_damaging(0.859) TCGA-CV-5442-01 13 42830658 42830658 G C FHP1 RNA 0.41 TCGA-CV-5442-01 14 105609968 105609968 C T JAG2 Missense_Mutation p.S1031N 0.46 tolerated(0.16) probably_damaging(0.985) TCGA-CV-5442-01 14 20856088 20856088 G T TEP1 Missense_Mutation p.P887H 0.31 deleterious(0.01) benign(0.06) TCGA-CV-5442-01 14 21829239 21829239 C T SUPT16H Missense_Mutation p.E643K 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-CV-5442-01 14 24663958 24663958 C T TM9SF1 Missense_Mutation p.E90K 0.37 tolerated(0.73) benign(0.01) TCGA-CV-5442-01 14 24710319 24710319 G A TINF2 Nonsense_Mutation p.Q171* 0.45 TCGA-CV-5442-01 14 30098292 30098292 G C PRKD1 Missense_Mutation p.I560M 0.44 tolerated(0.22) benign(0.257) TCGA-CV-5442-01 14 31614087 31614087 G A HECTD1 Missense_Mutation p.R853C 0.46 deleterious(0) probably_damaging(0.998) TCGA-CV-5442-01 14 38678915 38678915 C T SSTR1 Silent p.L107L 0.36 TCGA-CV-5442-01 14 50190589 50190589 C T KLHDC1 Intron 0.33 TCGA-CV-5442-01 14 79423682 79423682 C T NRXN3 Silent p.T418T 0.26 TCGA-CV-5442-01 14 80668711 80668711 C G DIO2 3'Flank 0.45 TCGA-CV-5442-01 14 92949145 92949145 C T SLC24A4 Silent p.T459T 0.53 TCGA-CV-5442-01 15 20170052 20170052 C T IGHV1OR15-9 Missense_Mutation p.D74N 0.44 tolerated(1) benign(0.006) TCGA-CV-5442-01 15 25470388 25470388 G A SNORD115-30 RNA 0.34 TCGA-CV-5442-01 15 34376648 34376663 CATGGTTGGAATTCAG - EMC7 Frame_Shift_Del p.L201Sfs*9 0.34 TCGA-CV-5442-01 15 42285087 42285087 G A PLA2G4E Missense_Mutation p.R440W 0.32 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 15 42734335 42734335 C T ZNF106 Silent p.E1210E 0.40 TCGA-CV-5442-01 15 48414417 48414417 G C SLC24A5 Intron 0.62 TCGA-CV-5442-01 15 63125727 63125727 G C TLN2 Missense_Mutation p.E2343Q 0.19 deleterious(0.01) possibly_damaging(0.855) TCGA-CV-5442-01 15 75188726 75188726 C T MPI Intron 0.27 TCGA-CV-5442-01 15 99670618 99670618 G A SYNM Missense_Mutation p.E684K 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-CV-5442-01 16 15045778 15045778 C T NPIPA1 Missense_Mutation p.P317S 0.04 deleterious(0) benign(0.377) TCGA-CV-5442-01 16 20487094 20487094 C T ACSM2A Missense_Mutation p.T366M 0.36 deleterious(0.02) possibly_damaging(0.56) TCGA-CV-5442-01 16 23491207 23491207 G C GGA2 Silent p.V336V 0.41 TCGA-CV-5442-01 16 3190831 3190831 C T ZNF213 Missense_Mutation p.A288V 0.52 tolerated(0.34) benign(0.003) TCGA-CV-5442-01 16 70543161 70543161 G T COG4 Missense_Mutation p.F325L 0.36 tolerated(0.13) benign(0.299) TCGA-CV-5442-01 16 71798596 71798596 G A AP1G1 Nonsense_Mutation p.R261* 0.31 TCGA-CV-5442-01 17 18769186 18769186 A T PRPSAP2 Missense_Mutation p.N14Y 0.33 deleterious(0) possibly_damaging(0.738) TCGA-CV-5442-01 17 28644217 28644217 G C TMIGD1 Missense_Mutation p.T260R 0.30 deleterious(0) probably_damaging(0.997) TCGA-CV-5442-01 17 39594463 39594463 C T KRT38 Missense_Mutation p.E375K 0.36 deleterious(0.03) benign(0.39) TCGA-CV-5442-01 17 39680030 39680030 G A KRT19 Missense_Mutation p.H390Y 0.27 tolerated(0.09) benign(0.003) TCGA-CV-5442-01 17 42934459 42934459 C T EFTUD2 Missense_Mutation p.E677K 0.40 tolerated(0.11) probably_damaging(0.945) TCGA-CV-5442-01 17 47797228 47797228 G A FAM117A Missense_Mutation p.S201F 0.38 tolerated(0.19) possibly_damaging(0.672) TCGA-CV-5442-01 17 7320306 7320306 G A NLGN2 Missense_Mutation p.E566K 0.54 tolerated(0.08) probably_damaging(0.963) TCGA-CV-5442-01 17 78320969 78320969 G A RNF213 Missense_Mutation p.R2945H 0.29 benign(0.136) TCGA-CV-5442-01 17 79082323 79082323 C T BAIAP2 Intron 0.31 TCGA-CV-5442-01 17 8411946 8411946 G T MYH10 Missense_Mutation p.A1047D 0.40 possibly_damaging(0.53) TCGA-CV-5442-01 17 9532073 9532073 C T WDR16 Silent p.I370I 0.41 TCGA-CV-5442-01 18 211360 211360 G C USP14 3'UTR 0.13 TCGA-CV-5442-01 18 21402267 21402267 C T LAMA3 Missense_Mutation p.R786C 0.34 possibly_damaging(0.88) TCGA-CV-5442-01 18 31325316 31325316 T C ASXL3 Missense_Mutation p.V1835A 0.03 benign(0.005) TCGA-CV-5442-01 18 47812521 47812521 C T CXXC1 Silent p.K110K 0.39 TCGA-CV-5442-01 18 47813971 47813971 C T CXXC1 5'UTR 0.45 TCGA-CV-5442-01 18 48331680 48331680 G C MRO Silent p.L105L 0.43 TCGA-CV-5442-01 18 59221574 59221574 G C CDH20 Missense_Mutation p.W684C 0.39 deleterious(0.04) probably_damaging(0.964) TCGA-CV-5442-01 18 72346054 72346054 C G ZNF407 Missense_Mutation p.H1027D 0.38 deleterious(0) possibly_damaging(0.694) TCGA-CV-5442-01 19 11687634 11687634 C G ACP5 Missense_Mutation p.D96H 0.25 tolerated(0.23) possibly_damaging(0.701) TCGA-CV-5442-01 19 14040932 14040932 G A CC2D1A Missense_Mutation p.E918K 0.18 deleterious(0) possibly_damaging(0.901) TCGA-CV-5442-01 19 18252811 18252811 G A MAST3 Silent p.L746L 0.22 TCGA-CV-5442-01 19 19740868 19740868 C T GMIP Silent p.E939E 0.25 TCGA-CV-5442-01 19 2247868 2247868 G A SF3A2 Missense_Mutation p.G240S 0.20 deleterious_low_confidence(0.04) unknown(0) TCGA-CV-5442-01 19 32844642 32844642 C T ZNF507 Silent p.V302V 0.11 TCGA-CV-5442-01 19 33370171 33370171 C T CEP89 Missense_Mutation p.R750K 0.30 tolerated(0.38) benign(0.007) TCGA-CV-5442-01 19 38230601 38230601 G A ZNF573 Missense_Mutation p.H264Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-CV-5442-01 19 38976258 38976258 C T RYR1 Missense_Mutation p.R1655C 0.23 benign(0.047) TCGA-CV-5442-01 19 39230743 39230743 G C CAPN12 Missense_Mutation p.S226C 0.18 deleterious(0.04) possibly_damaging(0.8) TCGA-CV-5442-01 19 42510807 42510807 G T GRIK5 Missense_Mutation p.T676N 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CV-5442-01 19 42599758 42599758 C T POU2F2 Missense_Mutation p.R298H 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-CV-5442-01 19 4529766 4529766 G A PLIN5 Intron 0.26 TCGA-CV-5442-01 19 46319745 46319745 C G SYMPK Missense_Mutation p.E1117Q 0.23 tolerated(0.21) probably_damaging(0.968) TCGA-CV-5442-01 19 46916184 46916184 C T CCDC8 5'UTR 0.30 TCGA-CV-5442-01 19 52954939 52954939 G A ZNF578 5'Flank 0.29 TCGA-CV-5442-01 19 53883984 53883984 C T ZNF525 Missense_Mutation p.S51F 0.18 tolerated(0.72) probably_damaging(0.996) TCGA-CV-5442-01 19 55899356 55899356 C T RPL28 Silent p.A88A 0.27 TCGA-CV-5442-01 19 56736048 56736048 C T ZSCAN5A Missense_Mutation p.R123K 0.35 tolerated(0.5) possibly_damaging(0.601) TCGA-CV-5442-01 19 58048682 58048682 C T ZNF549 Missense_Mutation p.H104Y 0.25 tolerated(0.12) benign(0.014) TCGA-CV-5442-01 19 58153100 58153100 C T ZNF211 Missense_Mutation p.R481W 0.34 tolerated(0.12) probably_damaging(0.981) TCGA-CV-5442-01 19 58189590 58189590 G T ZSCAN4 Nonsense_Mutation p.E207* 0.30 TCGA-CV-5442-01 19 6828659 6828659 C G VAV1 Silent p.V373V 0.10 TCGA-CV-5442-01 19 7998423 7998423 G A TIMM44 Missense_Mutation p.S239F 0.27 deleterious(0.04) probably_damaging(0.913) TCGA-CV-5442-01 19 8606807 8606807 C G MYO1F Silent p.L531L 0.24 TCGA-CV-5442-01 19 9204176 9204176 C T OR1M1 Nonsense_Mutation p.Q86* 0.13 TCGA-CV-5442-01 1 109197402 109197402 G T HENMT1 Missense_Mutation p.H112N 0.15 deleterious(0.02) benign(0.063) TCGA-CV-5442-01 1 114133210 114133210 G A MAGI3 Missense_Mutation p.E290K 0.17 deleterious(0.02) possibly_damaging(0.894) TCGA-CV-5442-01 1 114193781 114193781 G A MAGI3 Missense_Mutation p.R798Q 0.21 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 1 11907385 11907385 C T NPPA Missense_Mutation p.E79K 0.24 deleterious(0.03) possibly_damaging(0.64) TCGA-CV-5442-01 1 153785835 153785835 C T GATAD2B Missense_Mutation p.G437D 0.28 deleterious(0.01) probably_damaging(1) TCGA-CV-5442-01 1 155291198 155291198 C T RUSC1 Intron 0.20 TCGA-CV-5442-01 1 155686886 155686886 G A DAP3 Silent p.P45P 0.10 TCGA-CV-5442-01 1 156897321 156897321 C T LRRC71 Silent p.I232I 0.21 TCGA-CV-5442-01 1 160183267 160183267 G A PEA15 Silent p.K128K 0.13 TCGA-CV-5442-01 1 160327005 160327005 C T NCSTN Missense_Mutation p.R657C 0.30 deleterious(0.01) benign(0.359) TCGA-CV-5442-01 1 196871632 196871632 C A CFHR4 Missense_Mutation p.A47E 0.61 tolerated(0.12) possibly_damaging(0.9) TCGA-CV-5442-01 1 197404461 197404461 C T CRB1 Silent p.D1156D 0.53 TCGA-CV-5442-01 1 200619777 200619777 G C DDX59 Missense_Mutation p.Q364E 0.17 tolerated(0.22) possibly_damaging(0.773) TCGA-CV-5442-01 1 201193890 201193890 C T IGFN1 Silent p.L3458L 0.23 TCGA-CV-5442-01 1 204170910 204170910 G A GOLT1A Silent p.I49I 0.25 TCGA-CV-5442-01 1 204951100 204951100 G A NFASC Missense_Mutation p.G808R 0.30 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 1 207010082 207010082 C T IL19 Silent p.L63L 0.16 TCGA-CV-5442-01 1 212180042 212180042 A G INTS7 Missense_Mutation p.I273T 0.25 deleterious(0.02) benign(0.012) TCGA-CV-5442-01 1 230386252 230386252 G A GALNT2 Missense_Mutation p.E319K 0.26 tolerated(0.21) benign(0.185) TCGA-CV-5442-01 1 236180568 236180568 C G NID1 Missense_Mutation p.D712H 0.30 deleterious(0) probably_damaging(0.997) TCGA-CV-5442-01 1 248004499 248004499 G A OR11L1 Missense_Mutation p.R234W 0.24 deleterious(0.01) benign(0.042) TCGA-CV-5442-01 1 248616452 248616452 C T OR2T2 Silent p.L118L 0.07 TCGA-CV-5442-01 1 248616965 248616965 C A OR2T2 Silent p.L289L 0.14 TCGA-CV-5442-01 1 27277965 27277965 G A C1orf172 Missense_Mutation p.R303C 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-5442-01 1 28555483 28555483 C T DNAJC8 Missense_Mutation p.E44K 0.27 tolerated(0.05) benign(0.156) TCGA-CV-5442-01 1 33147251 33147251 G C SYNC 3'UTR 0.33 TCGA-CV-5442-01 1 33147528 33147528 G A RBBP4 3'UTR 0.32 TCGA-CV-5442-01 1 33147533 33147533 G A RBBP4 3'UTR 0.31 TCGA-CV-5442-01 1 45218850 45218850 G A KIF2C Silent p.L162L 0.34 TCGA-CV-5442-01 1 6648997 6648997 G C ZBTB48 Missense_Mutation p.E598Q 0.24 tolerated(0.53) benign(0.049) TCGA-CV-5442-01 1 67724885 67724885 G C IL23R 3'UTR 0.42 TCGA-CV-5442-01 1 87538628 87538628 G A HS2ST1 Missense_Mutation p.A46T 0.24 tolerated(0.28) benign(0.003) TCGA-CV-5442-01 1 89582907 89582907 C T GBP2 Silent p.K212K 0.50 TCGA-CV-5442-01 1 89730647 89730647 G C GBP5 Missense_Mutation p.L291V 0.32 deleterious(0) probably_damaging(0.99) TCGA-CV-5442-01 20 1115688 1115688 G A PSMF1 Intron 0.48 TCGA-CV-5442-01 20 25277175 25277175 C T PYGB 3'UTR 0.24 TCGA-CV-5442-01 20 30825529 30825529 G A POFUT1 3'UTR 0.23 TCGA-CV-5442-01 20 40065914 40065914 C T CHD6 Silent p.T1356T 0.18 TCGA-CV-5442-01 20 43030051 43030051 C T HNF4A Silent p.A13A 0.26 TCGA-CV-5442-01 20 46264311 46264311 C T NCOA3 Missense_Mutation p.S453F 0.23 tolerated(0.23) benign(0.01) TCGA-CV-5442-01 20 49508078 49508078 G C ADNP Missense_Mutation p.S1058C 0.23 deleterious_low_confidence(0) benign(0.423) TCGA-CV-5442-01 20 56073693 56073693 G A CTCFL Silent p.V635V 0.26 TCGA-CV-5442-01 20 9416276 9416276 G A PLCB4 Missense_Mutation p.R853K 0.25 tolerated(1) benign(0.004) TCGA-CV-5442-01 21 15525004 15525004 G A LIPI Silent p.T357T 0.28 TCGA-CV-5442-01 21 34931547 34931547 G A SON Silent p.Q2111Q 0.25 TCGA-CV-5442-01 21 39764247 39764247 C T ERG Intron 0.44 TCGA-CV-5442-01 21 47836709 47836709 G A PCNT Missense_Mutation p.E2293K 0.44 benign(0.007) TCGA-CV-5442-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-5442-01 22 26083563 26083563 T A ADRBK2 Missense_Mutation p.F296I 0.33 deleterious(0) probably_damaging(0.977) TCGA-CV-5442-01 22 30691791 30691791 C T TBC1D10A Silent p.V160V 0.24 TCGA-CV-5442-01 22 32756289 32756289 G A RFPL3 Missense_Mutation p.D142N 0.32 deleterious(0.04) possibly_damaging(0.538) TCGA-CV-5442-01 22 36889786 36889786 G A FOXRED2 Silent p.I563I 0.04 TCGA-CV-5442-01 22 40662468 40662468 G C TNRC6B Missense_Mutation p.G745A 0.28 tolerated(0.49) possibly_damaging(0.829) TCGA-CV-5442-01 22 42461763 42461763 C T NAGA Silent p.G246G 0.24 TCGA-CV-5442-01 22 43435712 43435712 G A TTLL1 3'UTR 0.44 TCGA-CV-5442-01 22 47071407 47071407 G A GRAMD4 Silent p.R507R 0.41 TCGA-CV-5442-01 2 101967378 101967378 C T CREG2 3'UTR 0.27 TCGA-CV-5442-01 2 132276720 132276720 C T AC093838.4 RNA 0.17 TCGA-CV-5442-01 2 15417101 15417101 C G NBAS Missense_Mutation p.D1755H 0.35 deleterious(0) probably_damaging(0.994) TCGA-CV-5442-01 2 165995989 165995989 C T SCN3A Missense_Mutation p.E717K 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-CV-5442-01 2 166758288 166758288 C T TTC21B Missense_Mutation p.E901K 0.38 deleterious(0.05) probably_damaging(0.981) TCGA-CV-5442-01 2 167334107 167334107 C T SCN7A Missense_Mutation p.E34K 0.52 tolerated(0.17) benign(0.219) TCGA-CV-5442-01 2 191873691 191873691 G A STAT1 Nonsense_Mutation p.Q91* 0.87 TCGA-CV-5442-01 2 1926709 1926709 C A MYT1L Nonsense_Mutation p.E278* 0.38 TCGA-CV-5442-01 2 215843708 215843708 G A ABCA12 Silent p.I1599I 0.47 TCGA-CV-5442-01 2 233704679 233704679 G C GIGYF2 Missense_Mutation p.E984Q 0.30 unknown(0) TCGA-CV-5442-01 2 241834961 241834961 G A C2orf54 Missense_Mutation p.L152F 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-5442-01 2 29356671 29356671 C T CLIP4 Missense_Mutation p.S173L 0.33 deleterious(0) benign(0.192) TCGA-CV-5442-01 2 36956606 36956606 G A VIT Silent p.T30T 0.37 TCGA-CV-5442-01 2 48681851 48681851 C T PPP1R21 Silent p.L82L 0.39 TCGA-CV-5442-01 2 66691284 66691284 C T MEIS1 Missense_Mutation p.S225L 0.23 tolerated(0.85) benign(0.313) TCGA-CV-5442-01 3 10320403 10320403 C T TATDN2 Intron 0.25 TCGA-CV-5442-01 3 115805246 115805246 C T LSAMP Missense_Mutation p.D105N 0.35 deleterious(0) probably_damaging(0.999) TCGA-CV-5442-01 3 147127991 147127991 G A ZIC1 Missense_Mutation p.R31Q 0.21 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-CV-5442-01 3 148897378 148897378 G A CP Missense_Mutation p.P876S 0.61 tolerated(0.55) possibly_damaging(0.786) TCGA-CV-5442-01 3 149678787 149678787 G C RNF13 Missense_Mutation p.D348H 0.17 deleterious(0.02) benign(0.348) TCGA-CV-5442-01 3 169504251 169504251 G C MYNN Missense_Mutation p.E540Q 0.28 deleterious_low_confidence(0.05) benign(0.432) TCGA-CV-5442-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-CV-5442-01 3 184020171 184020171 G A PSMD2 Missense_Mutation p.V240M 0.27 deleterious(0.05) benign(0.104) TCGA-CV-5442-01 3 184043060 184043060 C T EIF4G1 Nonsense_Mutation p.R961* 0.21 TCGA-CV-5442-01 3 38010903 38010903 G A CTDSPL Intron 0.19 TCGA-CV-5442-01 3 38103718 38103718 G C DLEC1 Missense_Mutation p.Q244H 0.28 tolerated(0.15) benign(0) TCGA-CV-5442-01 3 38755460 38755460 C G SCN10A Missense_Mutation p.E1265Q 0.26 deleterious(0.03) probably_damaging(0.981) TCGA-CV-5442-01 3 43388882 43388882 C G SNRK Silent p.L377L 0.18 TCGA-CV-5442-01 3 44951844 44951844 G A TGM4 Silent p.S530S 0.28 TCGA-CV-5442-01 3 51708495 51708495 G A TEX264 Missense_Mutation p.E59K 0.25 tolerated(0.08) possibly_damaging(0.527) TCGA-CV-5442-01 3 52256442 52256442 C G TLR9 Missense_Mutation p.L784F 0.18 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 3 52257323 52257323 G A TLR9 Missense_Mutation p.R491C 0.30 deleterious(0.02) benign(0.073) TCGA-CV-5442-01 3 52425293 52425293 G C DNAH1 Missense_Mutation p.E3280D 0.24 probably_damaging(0.999) TCGA-CV-5442-01 3 52819193 52819193 G A ITIH1 Missense_Mutation p.R514H 0.19 tolerated(0.06) benign(0.035) TCGA-CV-5442-01 3 53902620 53902620 C G ACTR8 3'UTR 0.36 TCGA-CV-5442-01 3 69088019 69088019 G A TMF1 Nonsense_Mutation p.Q657* 0.25 TCGA-CV-5442-01 3 7188201 7188201 C G GRM7 Missense_Mutation p.F194L 0.28 tolerated(0.09) possibly_damaging(0.524) TCGA-CV-5442-01 3 73432819 73432819 C T PDZRN3 Silent p.E966E 0.32 TCGA-CV-5442-01 3 74414719 74414719 C T CNTN3 Missense_Mutation p.E361K 0.27 tolerated(0.08) possibly_damaging(0.685) TCGA-CV-5442-01 3 85935436 85935436 C A CADM2 Missense_Mutation p.A156E 0.26 deleterious(0) probably_damaging(0.913) TCGA-CV-5442-01 3 9783100 9783100 C T BRPF1 Missense_Mutation p.R611W 0.18 deleterious(0) probably_damaging(0.997) TCGA-CV-5442-01 4 129043065 129043065 G A LARP1B Missense_Mutation p.D416N 0.40 deleterious(0) probably_damaging(0.996) TCGA-CV-5442-01 4 155531239 155531239 A T FGG Missense_Mutation p.I171N 0.39 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 4 164271506 164271506 C T NPY5R Silent p.F27F 0.38 TCGA-CV-5442-01 4 177056386 177056386 C T WDR17 Missense_Mutation p.P433L 0.39 tolerated(0.07) probably_damaging(0.999) TCGA-CV-5442-01 4 1808852 1808852 G C FGFR3 Missense_Mutation p.D764H 0.25 deleterious(0) probably_damaging(0.986) TCGA-CV-5442-01 4 1808924 1808924 G A FGFR3 Missense_Mutation p.D788N 0.56 deleterious(0) probably_damaging(0.999) TCGA-CV-5442-01 4 27024254 27024254 C T STIM2 Missense_Mutation p.S634L 0.38 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-CV-5442-01 4 38117541 38117541 G A TBC1D1 Missense_Mutation p.R923Q 0.47 deleterious(0) probably_damaging(0.994) TCGA-CV-5442-01 4 88231424 88231424 C T HSD17B13 Silent p.S261S 0.27 TCGA-CV-5442-01 5 101631989 101631989 C A SLCO4C1 5'UTR 0.41 TCGA-CV-5442-01 5 140209500 140209500 G A PCDHA6 Silent p.S608S 0.47 TCGA-CV-5442-01 5 140250862 140250862 C T PCDHA11 Missense_Mutation p.T725M 0.39 tolerated_low_confidence(0.07) benign(0.002) TCGA-CV-5442-01 5 140626472 140626472 G A PCDHB15 Silent p.S442S 0.38 TCGA-CV-5442-01 5 140720677 140720677 G A PCDHGA2 Silent p.A713A 0.35 TCGA-CV-5442-01 5 14492748 14492748 G A TRIO Missense_Mutation p.E2569K 0.09 benign(0.042) TCGA-CV-5442-01 5 145851051 145851051 G A TCERG1 Missense_Mutation p.E505K 0.38 tolerated(0.23) unknown(0) TCGA-CV-5442-01 5 148929808 148929808 G C CSNK1A1 Intron 0.48 TCGA-CV-5442-01 5 150097909 150097909 C G DCTN4 Missense_Mutation p.E341Q 0.38 tolerated(0.4) benign(0.084) TCGA-CV-5442-01 5 159820802 159820802 C T C5orf54 Missense_Mutation p.D566N 0.62 tolerated(0.75) benign(0.005) TCGA-CV-5442-01 5 176072440 176072440 C G EIF4E1B Silent p.V179V 0.33 TCGA-CV-5442-01 5 178505983 178505983 G C ZNF354C Missense_Mutation p.E184Q 0.31 tolerated(0.42) benign(0.295) TCGA-CV-5442-01 5 32108096 32108096 G A PDZD2 Missense_Mutation p.G2792E 0.12 deleterious(0) probably_damaging(1) TCGA-CV-5442-01 5 36181999 36181999 G T SKP2 Nonsense_Mutation p.E381* 0.19 TCGA-CV-5442-01 5 41160316 41160316 C T C6 Missense_Mutation p.E538K 0.11 deleterious(0.01) possibly_damaging(0.616) TCGA-CV-5442-01 5 484663 484663 C T SLC9A3 Missense_Mutation p.E302K 0.13 deleterious(0) probably_damaging(0.982) TCGA-CV-5442-01 5 53815217 53815217 G C SNX18 Missense_Mutation p.E479Q 0.39 tolerated(0.17) probably_damaging(0.999) TCGA-CV-5442-01 5 54585191 54585191 C T DHX29 Missense_Mutation p.E325K 0.43 tolerated(0.11) benign(0.004) TCGA-CV-5442-01 5 56777372 56777372 G A ACTBL2 3'UTR 0.48 TCGA-CV-5442-01 5 64020228 64020228 C T SREK1IP1 Missense_Mutation p.E151K 0.34 deleterious_low_confidence(0) unknown(0) TCGA-CV-5442-01 5 70671819 70671819 C T RP11-136K7.2 Intron 0.26 TCGA-CV-5442-01 5 74018254 74018254 G A GFM2 Missense_Mutation p.R721C 0.32 deleterious(0) probably_damaging(0.982) TCGA-CV-5442-01 5 74807074 74807074 C G COL4A3BP Missense_Mutation p.E115Q 0.50 tolerated_low_confidence(0.89) benign(0.014) TCGA-CV-5442-01 5 78076243 78076243 C T ARSB Missense_Mutation p.G527R 0.38 deleterious(0) probably_damaging(0.987) TCGA-CV-5442-01 5 89981662 89981662 G A GPR98 Missense_Mutation p.D2114N 0.46 probably_damaging(0.989) TCGA-CV-5442-01 6 109480484 109480484 C T CEP57L1 Missense_Mutation p.R279C 0.29 tolerated(0.18) benign(0) TCGA-CV-5442-01 6 109769587 109769587 T - MICAL1 Frame_Shift_Del p.E559Sfs*15 0.34 TCGA-CV-5442-01 6 119338003 119338003 G A FAM184A Missense_Mutation p.S480F 0.29 deleterious(0.03) possibly_damaging(0.5) TCGA-CV-5442-01 6 152456262 152456262 G A SYNE1 Nonsense_Mutation p.Q8589* 0.19 TCGA-CV-5442-01 6 157527778 157527778 G A ARID1B Missense_Mutation p.E1835K 0.16 probably_damaging(0.99) TCGA-CV-5442-01 6 160200073 160200073 C G TCP1 3'UTR 0.25 TCGA-CV-5442-01 6 30523396 30523396 G A GNL1 Missense_Mutation p.H59Y 0.33 deleterious(0.04) benign(0.006) TCGA-CV-5442-01 6 36891266 36891266 G A C6orf89 3'UTR 0.27 TCGA-CV-5442-01 6 38891905 38891905 G A DNAH8 Silent p.L3426L 0.24 TCGA-CV-5442-01 6 41712219 41712219 G A PGC Missense_Mutation p.P82S 0.25 deleterious(0) probably_damaging(0.997) TCGA-CV-5442-01 6 46678347 46678347 C G PLA2G7 Missense_Mutation p.D238H 0.30 deleterious(0) possibly_damaging(0.84) TCGA-CV-5442-01 6 5368981 5368981 C T FARS2 Nonsense_Mutation p.Q60* 0.36 TCGA-CV-5442-01 6 70840095 70840095 G A COL19A1 Missense_Mutation p.G455R 0.08 tolerated(0.53) benign(0.021) TCGA-CV-5442-01 6 74104684 74104684 G A DDX43 Missense_Mutation p.R19Q 0.34 tolerated_low_confidence(0.16) possibly_damaging(0.602) TCGA-CV-5442-01 6 82935280 82935280 C T IBTK Missense_Mutation p.D247N 0.23 tolerated(0.23) benign(0.043) TCGA-CV-5442-01 7 100859192 100859192 C G PLOD3 Silent p.L204L 0.16 TCGA-CV-5442-01 7 102996211 102996211 C G PSMC2 Silent p.L87L 0.33 TCGA-CV-5442-01 7 103130201 103130201 C T RELN Missense_Mutation p.E3251K 0.23 tolerated(0.42) benign(0.002) TCGA-CV-5442-01 7 103389927 103389927 A G RELN Missense_Mutation p.I201T 0.58 deleterious(0) benign(0.012) TCGA-CV-5442-01 7 142985527 142985527 G A CASP2 5'UTR 0.41 TCGA-CV-5442-01 7 151896385 151896385 G C KMT2C Missense_Mutation p.P1418A 0.26 benign(0.153) TCGA-CV-5442-01 7 1542722 1542722 G A INTS1 Missense_Mutation p.S55F 0.30 deleterious(0) possibly_damaging(0.707) TCGA-CV-5442-01 7 154595624 154595624 C T DPP6 Silent p.D486D 0.22 TCGA-CV-5442-01 7 18806740 18806740 C T HDAC9 Nonsense_Mutation p.Q726* 0.20 TCGA-CV-5442-01 7 29132252 29132252 G T CPVL Silent p.R177R 0.82 TCGA-CV-5442-01 7 30639566 30639566 C T GARS Silent p.L110L 0.30 TCGA-CV-5442-01 7 37955895 37955895 G A SFRP4 Missense_Mutation p.A82V 0.64 tolerated(0.15) benign(0.026) TCGA-CV-5442-01 7 38812186 38812186 A G VPS41 Missense_Mutation p.V355A 0.33 deleterious(0) probably_damaging(0.973) TCGA-CV-5442-01 7 71177210 71177210 G A WBSCR17 3'UTR 0.34 TCGA-CV-5442-01 7 71252799 71252799 C G CALN1 Silent p.L249L 0.34 TCGA-CV-5442-01 7 77797320 77797320 T G MAGI2 Missense_Mutation p.T837P 0.68 tolerated(0.35) benign(0.005) TCGA-CV-5442-01 7 78131061 78131061 C T MAGI2 Silent p.E266E 0.33 TCGA-CV-5442-01 7 80546041 80546041 C T SEMA3C Silent p.V19V 0.23 TCGA-CV-5442-01 7 95215081 95215081 C T PDK4 Missense_Mutation p.E370K 0.22 tolerated(0.11) probably_damaging(0.982) TCGA-CV-5442-01 7 97820093 97820093 C T LMTK2 Missense_Mutation p.S351L 0.57 tolerated(0.08) benign(0.291) TCGA-CV-5442-01 8 105105807 105105807 C T RIMS2 Intron 0.27 TCGA-CV-5442-01 8 110401306 110401306 A T PKHD1L1 Splice_Site p.X208_splice 0.30 TCGA-CV-5442-01 8 113519017 113519017 G A CSMD3 Missense_Mutation p.L1600F 0.21 deleterious(0.02) possibly_damaging(0.656) TCGA-CV-5442-01 8 125076810 125076810 C T FER1L6 Missense_Mutation p.P1184L 0.24 tolerated(0.29) benign(0.002) TCGA-CV-5442-01 8 144994955 144994955 C G PLEC Missense_Mutation p.E3149Q 0.36 possibly_damaging(0.572) TCGA-CV-5442-01 8 146278237 146278238 - A C8orf33 Frame_Shift_Ins p.E92Rfs*13 0.26 TCGA-CV-5442-01 8 2054178 2054178 G T MYOM2 Missense_Mutation p.V961L 0.20 tolerated(0.1) benign(0.006) TCGA-CV-5442-01 8 38851142 38851142 G A TM2D2 Missense_Mutation p.S118L 0.32 tolerated(0.22) benign(0.001) TCGA-CV-5442-01 8 39142417 39142417 T A ADAM32 3'UTR 0.20 TCGA-CV-5442-01 8 70981882 70981882 G A PRDM14 Missense_Mutation p.R72W 0.35 deleterious(0.01) possibly_damaging(0.549) TCGA-CV-5442-01 8 76465281 76465281 C T HNF4G Missense_Mutation p.S155L 0.29 tolerated(0.1) benign(0.003) TCGA-CV-5442-01 8 76471076 76471076 G A HNF4G Missense_Mutation p.M299I 0.33 tolerated(0.09) benign(0.066) TCGA-CV-5442-01 8 9437728 9437728 C T TNKS Missense_Mutation p.R245C 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-CV-5442-01 9 114454011 114454011 C T C9orf84 Missense_Mutation p.E1352K 0.26 tolerated(0.95) benign(0.004) TCGA-CV-5442-01 9 125921433 125921433 G A STRBP Silent p.G259G 0.29 TCGA-CV-5442-01 9 12821667 12821667 T G LURAP1L Missense_Mutation p.L199V 0.28 tolerated(0.08) benign(0.013) TCGA-CV-5442-01 9 132401583 132401583 C T ASB6 Missense_Mutation p.E137K 0.32 tolerated(0.06) possibly_damaging(0.524) TCGA-CV-5442-01 9 132890983 132890983 C T GPR107 Missense_Mutation p.S550L 0.24 deleterious(0) possibly_damaging(0.472) TCGA-CV-5442-01 9 136518063 136518063 G A DBH Missense_Mutation p.G459E 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-5442-01 9 139278482 139278482 G A SNAPC4 Missense_Mutation p.H475Y 0.26 deleterious(0) possibly_damaging(0.876) TCGA-CV-5442-01 9 16436303 16436303 T A BNC2 Missense_Mutation p.K630M 0.30 deleterious(0) probably_damaging(0.998) TCGA-CV-5442-01 9 19516048 19516048 C A SLC24A2 3'UTR 0.66 TCGA-CV-5442-01 9 34107477 34107477 G C DCAF12 Silent p.G140G 0.59 TCGA-CV-5442-01 9 37015106 37015106 C T PAX5 Missense_Mutation p.A100T 0.30 deleterious(0.01) benign(0.193) TCGA-CV-5442-01 9 390558 390558 G C DOCK8 Missense_Mutation p.E988Q 0.22 tolerated(0.28) possibly_damaging(0.653) TCGA-CV-5442-01 9 4118651 4118651 G A GLIS3 Missense_Mutation p.T276M 0.29 tolerated(0.3) benign(0) TCGA-CV-5442-01 9 6460620 6460620 C T UHRF2 Missense_Mutation p.P231L 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-CV-5442-01 9 6506129 6506129 C G UHRF2 Missense_Mutation p.L787V 0.27 deleterious(0) probably_damaging(0.952) TCGA-CV-5442-01 9 72131087 72131087 G A APBA1 Missense_Mutation p.S347L 0.29 deleterious(0) probably_damaging(0.996) TCGA-CV-5442-01 9 77448916 77448916 C A TRPM6 Missense_Mutation p.D223Y 0.57 deleterious(0) probably_damaging(0.98) TCGA-CV-5442-01 9 84609179 84609179 G A SPATA31D1 Missense_Mutation p.R1265H 0.34 tolerated(0.21) benign(0.001) TCGA-CV-5442-01 9 85627423 85627423 C T RASEF Missense_Mutation p.E257K 0.26 tolerated(0.07) probably_damaging(0.997) TCGA-CV-5442-01 9 97082865 97082865 G A NUTM2F Silent p.P331P 0.26 TCGA-CV-5442-01 X 11135450 11135450 G C HCCS Missense_Mutation p.E106Q 0.30 tolerated(0.47) possibly_damaging(0.593) TCGA-CV-5442-01 X 119249462 119249462 C T RHOXF1 Missense_Mutation p.R104Q 0.26 tolerated(0.22) benign(0.19) TCGA-CV-5442-01 X 131212241 131212241 G A FRMD7 Missense_Mutation p.P602S 0.25 tolerated(0.11) possibly_damaging(0.611) TCGA-CV-5442-01 X 138840005 138840005 G A ATP11C Nonsense_Mutation p.Q891* 0.26 TCGA-CV-5442-01 X 15555263 15555263 G T BMX Missense_Mutation p.W410L 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-CV-5442-01 X 19702076 19702076 G A SH3KBP1 Silent p.N197N 0.28 TCGA-CV-5442-01 X 2773149 2773149 C T GYG2 Missense_Mutation p.T178M 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-5442-01 X 3002413 3002413 G A ARSF Missense_Mutation p.R179H 0.31 tolerated(0.3) possibly_damaging(0.879) TCGA-CV-5442-01 X 38262913 38262913 G A OTC Missense_Mutation p.G195R 0.31 deleterious(0.04) probably_damaging(1) TCGA-CV-5442-01 X 49142813 49142813 C T PPP1R3F Missense_Mutation p.T554M 0.30 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-CV-5442-01 X 53243984 53243984 C T KDM5C Missense_Mutation p.D337N 0.34 deleterious(0) probably_damaging(0.975) TCGA-CV-5442-01 X 53573555 53573555 T A HUWE1 Splice_Site p.X3587_splice 0.48 TCGA-CV-5442-01 X 56590313 56590313 G A UBQLN2 Missense_Mutation p.E3K 0.16 tolerated_low_confidence(0.23) unknown(0) TCGA-CV-5442-01 X 64196284 64196284 G T ZC4H2 5'UTR 0.30 TCGA-CV-5442-01 X 69385733 69385733 G A IGBP1 Missense_Mutation p.E308K 0.28 deleterious(0.04) benign(0.25) TCGA-CV-5442-01 X 69595998 69595998 G A KIF4A Missense_Mutation p.A658T 0.26 tolerated(0.21) benign(0.057) TCGA-CV-5442-01 X 70836869 70836870 - AGGT CXCR3 Frame_Shift_Ins p.N199Pfs*209 0.23 TCGA-CV-5442-01 X 7268021 7268021 G A STS Missense_Mutation p.G491R 0.27 deleterious(0.01) probably_damaging(0.94) TCGA-CV-5442-01 X 73047490 73047490 A G XIST RNA 0.29 TCGA-CV-5442-01 X 83361414 83361414 G A RPS6KA6 Nonsense_Mutation p.R442* 0.22 TCGA-CV-5443-01 10 135003312 135003312 G A KNDC1 Missense_Mutation p.E524K 0.16 deleterious(0) possibly_damaging(0.757) TCGA-CV-5443-01 10 14923625 14923625 G A SUV39H2 Missense_Mutation p.C53Y 0.04 deleterious(0) probably_damaging(0.998) TCGA-CV-5443-01 10 27702649 27702649 C T PTCHD3 Silent p.P177P 0.23 TCGA-CV-5443-01 11 118263536 118263536 G A UBE4A Silent p.L1007L 0.40 TCGA-CV-5443-01 11 13410506 13410506 C A BTBD10 Missense_Mutation p.D434Y 0.37 deleterious(0) probably_damaging(0.993) TCGA-CV-5443-01 11 4944867 4944867 C A OR51G1 Nonsense_Mutation p.E235* 0.29 TCGA-CV-5443-01 11 60531293 60531293 G T MS4A15 Silent p.L29L 0.31 TCGA-CV-5443-01 11 65303482 65303482 C A SCYL1 Missense_Mutation p.P482Q 0.22 deleterious(0) probably_damaging(0.989) TCGA-CV-5443-01 11 66612399 66612399 G A RCE1 Missense_Mutation p.A171T 0.34 deleterious(0) probably_damaging(1) TCGA-CV-5443-01 12 122975114 122975114 C T ZCCHC8 Silent p.K106K 0.33 TCGA-CV-5443-01 12 12334328 12334328 C T LRP6 Missense_Mutation p.R341H 0.29 deleterious(0) benign(0.046) TCGA-CV-5443-01 12 15699542 15699542 C A PTPRO Missense_Mutation p.T735N 0.19 tolerated(0.06) possibly_damaging(0.734) TCGA-CV-5443-01 12 6859160 6859160 C T MLF2 Missense_Mutation p.R138Q 0.20 deleterious(0) benign(0.153) TCGA-CV-5443-01 13 39265211 39265211 A T FREM2 Missense_Mutation p.N1244Y 0.26 deleterious(0) possibly_damaging(0.496) TCGA-CV-5443-01 13 76134943 76134943 A G UCHL3 Missense_Mutation p.M37V 0.25 deleterious(0.04) benign(0.032) TCGA-CV-5443-01 14 101488430 101488430 G A MIR379 RNA 0.10 TCGA-CV-5443-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-5443-01 14 23846483 23846483 G A CMTM5 Missense_Mutation p.R8Q 0.26 tolerated_low_confidence(0.16) benign(0.013) TCGA-CV-5443-01 14 70989374 70989374 G A ADAM20 Missense_Mutation p.P751S 0.32 tolerated(0.43) benign(0.034) TCGA-CV-5443-01 14 93760396 93760396 A G BTBD7 Missense_Mutation p.Y324H 0.06 deleterious(0.02) possibly_damaging(0.864) TCGA-CV-5443-01 15 22383350 22383350 A G OR4N4 Missense_Mutation p.E293G 0.10 deleterious(0) possibly_damaging(0.834) TCGA-CV-5443-01 15 43821897 43821897 C T MAP1A Silent p.L2695L 0.23 TCGA-CV-5443-01 15 65739137 65739137 G A DPP8 3'UTR 0.25 TCGA-CV-5443-01 15 72186069 72186071 TCT - MYO9A In_Frame_Del p.E1697del 0.32 TCGA-CV-5443-01 16 22447022 22447022 C T RRN3P3 RNA 0.17 TCGA-CV-5443-01 16 30455654 30455654 G A SEPHS2 3'Flank 0.36 TCGA-CV-5443-01 16 55579722 55579722 A G LPCAT2 Missense_Mutation p.M310V 0.08 deleterious(0) possibly_damaging(0.596) TCGA-CV-5443-01 17 11778325 11778325 C T DNAH9 Silent p.D3434D 0.28 TCGA-CV-5443-01 17 1704289 1704289 C T SMYD4 Silent p.Q133Q 0.25 TCGA-CV-5443-01 17 27015218 27015218 C T SUPT6H Missense_Mutation p.T1039M 0.24 deleterious(0) probably_damaging(0.943) TCGA-CV-5443-01 17 36689649 36689649 T - SRCIN1 Frame_Shift_Del p.E1146Rfs*2 0.19 TCGA-CV-5443-01 17 39658663 39658663 C T KRT13 Missense_Mutation p.A403T 0.30 tolerated(0.07) possibly_damaging(0.744) TCGA-CV-5443-01 18 47110036 47110036 G A LIPG Nonsense_Mutation p.W423* 0.23 TCGA-CV-5443-01 19 15302992 15302992 C T NOTCH3 Missense_Mutation p.R153H 0.36 tolerated(0.15) benign(0.216) TCGA-CV-5443-01 19 47824133 47824133 C T C5AR1 3'UTR 0.26 TCGA-CV-5443-01 19 53854765 53854765 C A ZNF845 Silent p.T279T 0.22 TCGA-CV-5443-01 1 149858146 149858146 G C HIST2H2BE Silent p.S15S 0.32 TCGA-CV-5443-01 1 156214599 156214599 G T PAQR6 Missense_Mutation p.A132D 0.26 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CV-5443-01 1 248366532 248366532 C A OR2M3 Missense_Mutation p.L55I 0.30 deleterious(0) probably_damaging(0.94) TCGA-CV-5443-01 1 43777409 43777409 G A TIE1 Silent p.P467P 0.26 TCGA-CV-5443-01 1 43804269 43804269 G A MPL Missense_Mutation p.R90Q 0.21 deleterious(0.02) benign(0.319) TCGA-CV-5443-01 20 2297758 2297758 C T TGM3 Silent p.S238S 0.26 TCGA-CV-5443-01 20 62631039 62631039 G A PRPF6 Missense_Mutation p.R317H 0.35 deleterious(0.01) possibly_damaging(0.75) TCGA-CV-5443-01 22 37769728 37769728 C T ELFN2 Missense_Mutation p.R616H 0.50 deleterious(0) probably_damaging(0.999) TCGA-CV-5443-01 2 125175049 125175049 C G CNTNAP5 Missense_Mutation p.S137R 0.28 deleterious(0) probably_damaging(0.979) TCGA-CV-5443-01 2 125204332 125204332 G T CNTNAP5 Missense_Mutation p.D246Y 0.22 deleterious(0) probably_damaging(0.981) TCGA-CV-5443-01 2 141598619 141598619 C T LRP1B Missense_Mutation p.R1661H 0.23 possibly_damaging(0.522) TCGA-CV-5443-01 2 220412472 220412472 C T TMEM198 Silent p.S137S 0.28 TCGA-CV-5443-01 2 27804538 27804538 G A C2orf16 Missense_Mutation p.R1700K 0.03 tolerated(0.18) benign(0.219) TCGA-CV-5443-01 3 142103391 142103391 G T XRN1 Missense_Mutation p.P826T 0.21 tolerated(0.08) benign(0.334) TCGA-CV-5443-01 4 100062705 100062705 G T ADH4 Silent p.T83T 0.34 TCGA-CV-5443-01 4 38023338 38023338 G C TBC1D1 Missense_Mutation p.E403D 0.12 deleterious(0.02) possibly_damaging(0.869) TCGA-CV-5443-01 4 71347107 71347107 C A MUC7 Missense_Mutation p.P216T 0.06 tolerated(0.31) unknown(0) TCGA-CV-5443-01 4 95155227 95155227 C T SMARCAD1 Missense_Mutation p.T164I 0.39 deleterious(0.03) possibly_damaging(0.571) TCGA-CV-5443-01 5 176024594 176024594 C T GPRIN1 Missense_Mutation p.V748M 0.26 tolerated(0.13) benign(0.329) TCGA-CV-5443-01 5 176935517 176935517 C A DOK3 Silent p.L87L 0.19 TCGA-CV-5443-01 5 176951589 176951589 A G FAM193B Silent p.G631G 0.26 TCGA-CV-5443-01 5 32312996 32312996 C A MTMR12 5'UTR 0.36 TCGA-CV-5443-01 5 33549375 33549375 G A ADAMTS12 Silent p.P1413P 0.28 TCGA-CV-5443-01 5 34824125 34824125 C T RAI14 Silent p.N729N 0.41 TCGA-CV-5443-01 5 878568 878568 C T BRD9 Silent p.S391S 0.07 TCGA-CV-5443-01 6 110763501 110763509 AAAACGAGT - SLC22A16 In_Frame_Del p.Y374_F376del 0.13 TCGA-CV-5443-01 6 137527279 137527279 G A IFNGR1 Nonsense_Mutation p.R123* 0.05 TCGA-CV-5443-01 6 152763322 152763322 G A SYNE1 Missense_Mutation p.A1299V 0.20 benign(0.022) TCGA-CV-5443-01 6 26476600 26476600 G A BTN2A1 3'UTR 0.50 TCGA-CV-5443-01 6 31997106 31997106 G A C4B Missense_Mutation p.E1223K 0.13 tolerated(0.24) benign(0.013) TCGA-CV-5443-01 6 73951452 73951452 C A KHDC1 Splice_Site p.X172_splice 0.31 TCGA-CV-5443-01 7 103214639 103214639 C T RELN Missense_Mutation p.G1471R 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-5443-01 7 142563798 142563798 G A EPHB6 Missense_Mutation p.G396R 0.25 deleterious(0) probably_damaging(1) TCGA-CV-5443-01 7 154684403 154684403 C T DPP6 3'UTR 0.21 TCGA-CV-5443-01 7 48081064 48081064 A G C7orf57 Missense_Mutation p.I63M 0.38 deleterious(0) probably_damaging(0.923) TCGA-CV-5443-01 8 103664557 103664557 C T KLF10 Silent p.E35E 0.28 TCGA-CV-5443-01 8 21973915 21973915 G A HR Silent p.S1135S 0.24 TCGA-CV-5443-01 9 140058119 140058119 C G GRIN1 Silent p.A835A 0.28 TCGA-CV-5443-01 X 101857876 101857876 T G ARMCX5 Silent p.P269P 0.51 TCGA-CV-5443-01 X 1755398 1755398 G C ASMT Missense_Mutation p.W285C 0.28 deleterious(0) probably_damaging(0.998) TCGA-CV-5444-01 10 12197928 12197928 G C SEC61A2 Missense_Mutation p.R205T 0.15 deleterious(0.02) benign(0.06) TCGA-CV-5444-01 10 71835389 71835389 C A H2AFY2 5'UTR 0.18 TCGA-CV-5444-01 10 71902546 71902546 G C TYSND1 Nonsense_Mutation p.S454* 0.14 TCGA-CV-5444-01 10 97920007 97920007 G A ZNF518A RNA 0.09 TCGA-CV-5444-01 11 113295483 113295483 C T DRD2 Intron 0.24 TCGA-CV-5444-01 11 124294096 124294096 G C OR8B4 Missense_Mutation p.I224M 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-5444-01 11 133789939 133789939 G A IGSF9B Silent p.G1227G 0.20 TCGA-CV-5444-01 11 18422455 18422455 C T LDHA Missense_Mutation p.R135C 0.07 tolerated(0.06) probably_damaging(0.983) TCGA-CV-5444-01 11 46389294 46389294 G A DGKZ Missense_Mutation p.M310I 0.23 tolerated(0.27) benign(0.017) TCGA-CV-5444-01 11 46400012 46400012 G T DGKZ Nonsense_Mutation p.E982* 0.14 TCGA-CV-5444-01 11 47256845 47256845 G A DDB2 Missense_Mutation p.R302Q 0.07 tolerated(0.23) benign(0.054) TCGA-CV-5444-01 11 48328525 48328525 C - OR4S1 Frame_Shift_Del p.M253Cfs*23 0.17 TCGA-CV-5444-01 11 64698016 64698016 G A PPP2R5B Silent p.L282L 0.08 TCGA-CV-5444-01 11 7022446 7022446 C G ZNF214 Missense_Mutation p.M156I 0.21 tolerated(0.36) benign(0.002) TCGA-CV-5444-01 11 70281210 70281210 G T CTTN Missense_Mutation p.G495V 0.20 deleterious(0) probably_damaging(1) TCGA-CV-5444-01 11 73067756 73067756 C G ARHGEF17 Silent p.L1281L 0.07 TCGA-CV-5444-01 11 8118955 8118955 C T TUB Missense_Mutation p.R345C 0.10 deleterious(0) probably_damaging(0.976) TCGA-CV-5444-01 12 122622100 122622100 C G MLXIP Nonsense_Mutation p.S706* 0.08 TCGA-CV-5444-01 12 123200775 123200775 C G HCAR3 Missense_Mutation p.Q170H 0.15 tolerated(0.6) benign(0.004) TCGA-CV-5444-01 12 25272139 25272139 C G CASC1 Missense_Mutation p.E446Q 0.07 tolerated(0.51) benign(0.03) TCGA-CV-5444-01 12 26384028 26384028 C G SSPN 3'UTR 0.09 TCGA-CV-5444-01 12 40709011 40709011 C G LRRK2 Intron 0.17 TCGA-CV-5444-01 12 40745387 40745387 G A LRRK2 Missense_Mutation p.R2143H 0.20 tolerated(0.67) benign(0) TCGA-CV-5444-01 12 53207700 53207700 C T KRT4 Missense_Mutation p.G48D 0.24 deleterious(0) possibly_damaging(0.901) TCGA-CV-5444-01 12 62715321 62715321 G C USP15 Missense_Mutation p.M184I 0.12 tolerated(0.21) benign(0.227) TCGA-CV-5444-01 12 675230 675230 G A NINJ2 Silent p.L96L 0.19 TCGA-CV-5444-01 13 111558412 111558412 G A ANKRD10 Silent p.I141I 0.20 TCGA-CV-5444-01 13 25376549 25376549 G C RNF17 Missense_Mutation p.E597Q 0.08 tolerated(0.09) benign(0.034) TCGA-CV-5444-01 13 39430346 39430346 T A FREM2 Missense_Mutation p.F2337I 0.09 deleterious(0) probably_damaging(0.998) TCGA-CV-5444-01 13 41134162 41134162 C T FOXO1 Missense_Mutation p.S489N 0.13 tolerated(0.17) benign(0.001) TCGA-CV-5444-01 14 102508999 102508999 C T DYNC1H1 Missense_Mutation p.R4143C 0.09 probably_damaging(0.997) TCGA-CV-5444-01 14 105412495 105412495 G A AHNAK2 Missense_Mutation p.T3098M 0.14 benign(0.081) TCGA-CV-5444-01 14 107013028 107013028 G A IGHV3-49 Silent p.F89F 0.21 TCGA-CV-5444-01 14 24607870 24607870 C T PSME1 3'UTR 0.28 TCGA-CV-5444-01 14 24711353 24711353 C T TINF2 Silent p.K62K 0.18 TCGA-CV-5444-01 14 29237058 29237058 G C FOXG1 Missense_Mutation p.M191I 0.09 deleterious(0.01) probably_damaging(0.989) TCGA-CV-5444-01 14 70418890 70418890 C G SMOC1 Silent p.L45L 0.21 TCGA-CV-5444-01 14 73448574 73448574 G A ZFYVE1 Silent p.I411I 0.06 TCGA-CV-5444-01 14 74523883 74523883 C T CCDC176 Silent p.T500T 0.15 TCGA-CV-5444-01 14 76668293 76668293 G A GPATCH2L 3'UTR 0.19 TCGA-CV-5444-01 14 92471271 92471271 C T TRIP11 Missense_Mutation p.E1017K 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-CV-5444-01 14 95562276 95562276 G A DICER1 Missense_Mutation p.H1661Y 0.14 tolerated(0.47) possibly_damaging(0.748) TCGA-CV-5444-01 14 96134710 96134710 T C TCL6 Intron 0.20 TCGA-CV-5444-01 15 25307553 25307553 G A SNORD116-5 RNA 0.09 TCGA-CV-5444-01 15 41099536 41099536 C G ZFYVE19 5'UTR 0.13 TCGA-CV-5444-01 15 42442333 42442333 C G PLA2G4F Missense_Mutation p.E298Q 0.07 tolerated(0.28) benign(0.036) TCGA-CV-5444-01 15 43730581 43730581 G C TP53BP1 Missense_Mutation p.I1044M 0.16 deleterious(0.01) benign(0.037) TCGA-CV-5444-01 15 73581580 73581580 G A NEO1 Splice_Site p.X1248_splice 0.12 TCGA-CV-5444-01 15 99672808 99672808 G A SYNM Missense_Mutation p.E1414K 0.10 deleterious(0.02) benign(0.058) TCGA-CV-5444-01 16 31151714 31151714 G A PRSS36 Silent p.S730S 0.08 TCGA-CV-5444-01 16 31228221 31228221 C T PYDC1 Silent p.A43A 0.07 TCGA-CV-5444-01 16 50667326 50667326 C A NKD1 Silent p.P349P 0.10 TCGA-CV-5444-01 16 50745721 50745721 C T NOD2 Silent p.G633G 0.16 TCGA-CV-5444-01 16 67899106 67899106 G C NUTF2 Missense_Mutation p.D25H 0.12 deleterious(0.01) possibly_damaging(0.819) TCGA-CV-5444-01 16 71768545 71768545 G C AP1G1 Missense_Mutation p.I781M 0.06 tolerated(0.06) benign(0.145) TCGA-CV-5444-01 17 10248844 10248844 G T MYH13 Silent p.T451T 0.22 TCGA-CV-5444-01 17 15971267 15971267 C T NCOR1 Missense_Mutation p.R1561Q 0.42 probably_damaging(0.99) TCGA-CV-5444-01 17 1972199 1972199 C T SMG6 Missense_Mutation p.M1236I 0.19 tolerated(0.61) benign(0.004) TCGA-CV-5444-01 17 21826393 21826393 C A FAM27L RNA 0.42 TCGA-CV-5444-01 17 41003847 41003847 C T AOC3 Missense_Mutation p.P163S 0.20 deleterious(0.02) possibly_damaging(0.887) TCGA-CV-5444-01 17 42155928 42155928 G A HDAC5 Missense_Mutation p.A1091V 0.11 deleterious(0) probably_damaging(0.987) TCGA-CV-5444-01 17 43009571 43009571 C A KIF18B Missense_Mutation p.Q414H 0.15 tolerated(0.05) probably_damaging(0.922) TCGA-CV-5444-01 17 44408471 44408471 C A LRRC37A Silent p.T1276T 0.23 TCGA-CV-5444-01 17 55038285 55038285 C G COIL Missense_Mutation p.L32F 0.12 deleterious(0.01) probably_damaging(0.914) TCGA-CV-5444-01 17 7578506 7578514 GGCAGGTCT - TP53 In_Frame_Del p.K139_P142delinsT 0.20 TCGA-CV-5444-01 17 7579912 7579912 T C TP53 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-CV-5444-01 17 7734557 7734557 C A DNAH2 Silent p.T4128T 0.31 TCGA-CV-5444-01 17 79517287 79517287 G T C17orf70 Silent p.P411P 0.20 TCGA-CV-5444-01 17 79612251 79612251 G A TSPAN10 Silent p.L90L 0.18 TCGA-CV-5444-01 17 80788944 80788944 C G ZNF750 Missense_Mutation p.E463Q 0.11 tolerated(0.21) possibly_damaging(0.448) TCGA-CV-5444-01 18 31803292 31803292 G A NOL4 5'UTR 0.18 TCGA-CV-5444-01 19 41860592 41860592 G C B9D2 3'UTR 0.10 TCGA-CV-5444-01 19 5047507 5047507 C T KDM4B Silent p.I151I 0.08 TCGA-CV-5444-01 19 52506950 52506950 C T ZNF615 Silent p.Q5Q 0.11 TCGA-CV-5444-01 19 54656252 54656252 G T CNOT3 Missense_Mutation p.G598V 0.08 deleterious(0) probably_damaging(0.953) TCGA-CV-5444-01 19 58438294 58438294 C A ZNF418 Missense_Mutation p.G419C 0.17 deleterious(0) possibly_damaging(0.507) TCGA-CV-5444-01 19 58472888 58472888 G A C19orf18 Missense_Mutation p.L135F 0.13 deleterious(0.05) probably_damaging(0.934) TCGA-CV-5444-01 19 7584186 7584186 G A ZNF358 Missense_Mutation p.E20K 0.08 tolerated_low_confidence(0.09) benign(0.001) TCGA-CV-5444-01 1 109795151 109795151 G A CELSR2 Missense_Mutation p.R817Q 0.11 tolerated(0.19) possibly_damaging(0.77) TCGA-CV-5444-01 1 111996851 111996851 G C ATP5F1 Missense_Mutation p.R32S 0.11 tolerated(0.09) probably_damaging(0.925) TCGA-CV-5444-01 1 145538042 145538042 C A ITGA10 Silent p.V907V 0.23 TCGA-CV-5444-01 1 1455561 1455561 G A ATAD3A Silent p.E233E 0.09 TCGA-CV-5444-01 1 152085245 152085245 C T TCHH Missense_Mutation p.E150K 0.19 unknown(0) TCGA-CV-5444-01 1 196197298 196197298 C A KCNT2 3'UTR 0.17 TCGA-CV-5444-01 1 197407928 197407928 G A CRB1 Intron 0.29 TCGA-CV-5444-01 1 19950057 19950057 C G MINOS1 Missense_Mutation p.L68V 0.11 tolerated(0.13) benign(0.012) TCGA-CV-5444-01 1 19992662 19992662 C T HTR6 Missense_Mutation p.T139M 0.09 deleterious(0) probably_damaging(0.998) TCGA-CV-5444-01 1 202569513 202569513 G C SYT2 Silent p.L297L 0.09 TCGA-CV-5444-01 1 203316668 203316668 G A FMOD Missense_Mutation p.S244L 0.10 tolerated(0.28) benign(0.004) TCGA-CV-5444-01 1 21936736 21936736 G A RAP1GAP Silent p.I356I 0.14 TCGA-CV-5444-01 1 227216783 227216783 C T CDC42BPA Missense_Mutation p.C1301Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-5444-01 1 246498710 246498710 G A SMYD3 Missense_Mutation p.P99S 0.21 tolerated(0.07) benign(0.082) TCGA-CV-5444-01 1 28657231 28657231 G A MED18 Missense_Mutation p.E20K 0.16 deleterious(0) probably_damaging(0.987) TCGA-CV-5444-01 1 35480710 35480710 G A ZMYM6 Missense_Mutation p.P161L 0.22 tolerated(0.36) benign(0.006) TCGA-CV-5444-01 1 38352663 38352663 C T INPP5B Missense_Mutation p.R343Q 0.09 deleterious(0) probably_damaging(1) TCGA-CV-5444-01 1 40961662 40961662 C T ZFP69 Silent p.F504F 0.27 TCGA-CV-5444-01 1 53537247 53537247 G A PODN Missense_Mutation p.R166Q 0.14 tolerated(0.09) probably_damaging(0.942) TCGA-CV-5444-01 1 53736921 53736921 G C LRP8 Silent p.L368L 0.07 TCGA-CV-5444-01 1 65845131 65845131 A G DNAJC6 Missense_Mutation p.N197S 0.05 tolerated(0.46) probably_damaging(0.966) TCGA-CV-5444-01 1 75622625 75622625 T G LHX8 Silent p.P286P 0.15 TCGA-CV-5444-01 1 7737774 7737774 C T CAMTA1 Silent p.H965H 0.21 TCGA-CV-5444-01 1 78444669 78444676 ACTGTTGA - FUBP1 Frame_Shift_Del p.S5Afs*21 0.22 TCGA-CV-5444-01 20 24523672 24523672 G A SYNDIG1 5'UTR 0.15 TCGA-CV-5444-01 20 35443718 35443718 G C SOGA1 Silent p.L709L 0.33 TCGA-CV-5444-01 20 54972832 54972832 G A CSTF1 Missense_Mutation p.D194N 0.11 deleterious(0.01) probably_damaging(0.934) TCGA-CV-5444-01 20 60888187 60888187 C T LAMA5 Missense_Mutation p.R2971Q 0.42 benign(0.114) TCGA-CV-5444-01 20 60966046 60966046 C T CABLES2 Missense_Mutation p.R473H 0.25 deleterious(0) probably_damaging(0.993) TCGA-CV-5444-01 22 21304053 21304053 G A CRKL Missense_Mutation p.E278K 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-CV-5444-01 22 22313587 22313587 C G TOP3B Missense_Mutation p.E608Q 0.06 deleterious(0.01) benign(0.046) TCGA-CV-5444-01 22 26228956 26228956 C A MYO18B Missense_Mutation p.P1018T 0.16 tolerated(0.08) probably_damaging(0.931) TCGA-CV-5444-01 2 106498121 106498121 G A NCK2 Silent p.L188L 0.12 TCGA-CV-5444-01 2 135756548 135756548 G C MAP3K19 Missense_Mutation p.Q112E 0.12 deleterious(0.05) benign(0.114) TCGA-CV-5444-01 2 160241870 160241870 G C BAZ2B Missense_Mutation p.A1161G 0.08 benign(0.334) TCGA-CV-5444-01 2 165949010 165949010 C G SCN3A Missense_Mutation p.D1521H 0.20 deleterious(0) probably_damaging(1) TCGA-CV-5444-01 2 237150090 237150090 C T ASB18 Intron 0.11 TCGA-CV-5444-01 2 242407683 242407683 C T FARP2 Silent p.L674L 0.14 TCGA-CV-5444-01 2 53897623 53897623 T A ASB3 3'UTR 0.18 TCGA-CV-5444-01 2 86433353 86433353 C T MRPL35 Silent p.S56S 0.14 TCGA-CV-5444-01 2 9676833 9676833 C T ADAM17 Missense_Mutation p.V119M 0.10 deleterious(0) possibly_damaging(0.832) TCGA-CV-5444-01 2 97498355 97498355 G A CNNM3 3'UTR 0.09 TCGA-CV-5444-01 3 110845177 110845177 T C PVRL3 Missense_Mutation p.I355T 0.25 deleterious(0) possibly_damaging(0.858) TCGA-CV-5444-01 3 124998088 124998088 G A ZNF148 Missense_Mutation p.L155F 0.39 tolerated(0.07) probably_damaging(0.973) TCGA-CV-5444-01 3 141231006 141231006 T A RASA2 Nonsense_Mutation p.C45* 0.24 TCGA-CV-5444-01 3 151166371 151166371 C T IGSF10 Silent p.R466R 0.16 TCGA-CV-5444-01 3 183535851 183535851 C T MAP6D1 Silent p.K150K 0.09 TCGA-CV-5444-01 3 195711456 195711456 G A SDHAP1 RNA 0.14 TCGA-CV-5444-01 3 30729875 30729875 G A TGFBR2 Splice_Site p.X491_splice 0.16 TCGA-CV-5444-01 3 30729917 30729917 G A TGFBR2 Missense_Mutation p.E505K 0.17 deleterious(0) benign(0.208) TCGA-CV-5444-01 3 77666731 77666731 G C ROBO2 Missense_Mutation p.E1137Q 0.23 deleterious(0.03) benign(0.403) TCGA-CV-5444-01 3 9747714 9747714 G C CPNE9 Missense_Mutation p.G115A 0.08 tolerated(0.25) benign(0.414) TCGA-CV-5444-01 3 9945094 9945094 C A IL17RE Missense_Mutation p.T49N 0.22 deleterious_low_confidence(0.04) benign(0.057) TCGA-CV-5444-01 4 100532392 100532392 T C MTTP Missense_Mutation p.I621T 0.14 deleterious(0.01) benign(0.044) TCGA-CV-5444-01 4 126238826 126238826 C G FAT4 Missense_Mutation p.I420M 0.19 probably_damaging(0.99) TCGA-CV-5444-01 4 144920591 144920591 G C GYPB Missense_Mutation p.Q50E 0.45 deleterious(0.01) possibly_damaging(0.523) TCGA-CV-5444-01 4 82056396 82056396 T A PRKG2 Silent p.A563A 0.17 TCGA-CV-5444-01 5 11364901 11364901 G A CTNND2 Missense_Mutation p.R427C 0.25 deleterious(0) probably_damaging(0.973) TCGA-CV-5444-01 5 140531980 140531980 G A PCDHB6 Silent p.R714R 0.10 TCGA-CV-5444-01 5 140553835 140553835 C T PCDHB7 Silent p.V473V 0.06 TCGA-CV-5444-01 5 140589072 140589072 A T PCDHB12 Missense_Mutation p.K198M 0.21 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-CV-5444-01 5 148745675 148745675 G T PCYOX1L Missense_Mutation p.R214L 0.20 deleterious(0) probably_damaging(0.998) TCGA-CV-5444-01 5 154250259 154250259 C T CNOT8 Missense_Mutation p.A117V 0.22 tolerated(0.17) benign(0.006) TCGA-CV-5444-01 5 177036573 177036573 G A B4GALT7 Silent p.L287L 0.15 TCGA-CV-5444-01 5 40747015 40747015 C T TTC33 Missense_Mutation p.D36N 0.11 tolerated(0.2) benign(0.06) TCGA-CV-5444-01 5 54552280 54552280 C T DHX29 3'UTR 0.26 TCGA-CV-5444-01 6 125569434 125569434 G A TPD52L1 Silent p.K97K 0.22 TCGA-CV-5444-01 6 32020544 32020544 G A TNXB Silent p.T3004T 0.20 TCGA-CV-5444-01 6 57398239 57398239 G T PRIM2 Missense_Mutation p.K314N 0.08 deleterious(0) probably_damaging(1) TCGA-CV-5444-01 6 62995957 62995957 G A KHDRBS2 5'UTR 0.33 TCGA-CV-5444-01 6 69684692 69684692 G T BAI3 Silent p.S521S 0.08 TCGA-CV-5444-01 6 91226264 91226264 C T MAP3K7 Missense_Mutation p.E593K 0.18 deleterious(0.04) benign(0.069) TCGA-CV-5444-01 7 12691524 12691524 C T SCIN Missense_Mutation p.S673F 0.37 tolerated(0.28) probably_damaging(1) TCGA-CV-5444-01 7 127235925 127235925 C T FSCN3 Missense_Mutation p.P237S 0.24 deleterious(0.01) benign(0.424) TCGA-CV-5444-01 7 142498971 142498971 C G TRBC2 Missense_Mutation p.S83W 0.11 deleterious(0) probably_damaging(0.989) TCGA-CV-5444-01 7 151859737 151859737 G C KMT2C Missense_Mutation p.S3642C 0.22 probably_damaging(0.995) TCGA-CV-5444-01 7 151859794 151859794 G C KMT2C Nonsense_Mutation p.S3623* 0.16 TCGA-CV-5444-01 7 29111497 29111497 G A CPVL Silent p.F252F 0.40 TCGA-CV-5444-01 7 50514941 50514941 C G FIGNL1 Missense_Mutation p.Q15H 0.34 deleterious(0) probably_damaging(0.973) TCGA-CV-5444-01 7 64643382 64643382 C T INTS4L1 RNA 0.45 TCGA-CV-5444-01 7 75192564 75192564 C T HIP1 Silent p.L269L 0.08 TCGA-CV-5444-01 7 95224335 95224335 C T PDK4 Nonsense_Mutation p.W91* 0.11 TCGA-CV-5444-01 7 97861158 97861158 G T TECPR1 Missense_Mutation p.D644E 0.04 deleterious(0.04) possibly_damaging(0.742) TCGA-CV-5444-01 8 103291308 103291308 G A UBR5 Silent p.L2044L 0.06 TCGA-CV-5444-01 8 104417026 104417026 G A SLC25A32 Silent p.Y123Y 0.11 TCGA-CV-5444-01 8 121174684 121174684 G A COL14A1 Silent p.L75L 0.08 TCGA-CV-5444-01 8 131414210 131414210 A G ASAP1 5'UTR 0.23 TCGA-CV-5444-01 8 133051056 133051056 C G OC90 Missense_Mutation p.L203F 0.10 tolerated(0.18) possibly_damaging(0.632) TCGA-CV-5444-01 8 142228641 142228641 G A SLC45A4 Silent p.A315A 0.21 TCGA-CV-5444-01 8 144644225 144644225 A T GSDMD Missense_Mutation p.E307V 0.31 tolerated(0.05) benign(0.2) TCGA-CV-5444-01 8 145737627 145737627 C G RECQL4 Missense_Mutation p.E1046Q 0.19 tolerated(0.46) benign(0.124) TCGA-CV-5444-01 8 93029589 93029589 G T RUNX1T1 Missense_Mutation p.R42S 0.12 tolerated_low_confidence(0.08) possibly_damaging(0.745) TCGA-CV-5444-01 9 113562840 113562840 A C MUSK Missense_Mutation p.T728P 0.20 deleterious(0.02) probably_damaging(1) TCGA-CV-5444-01 9 127289143 127289143 G A NR6A1 Silent p.L372L 0.07 TCGA-CV-5444-01 9 129595320 129595320 G C ZBTB43 Missense_Mutation p.E178Q 0.10 tolerated(0.16) benign(0.133) TCGA-CV-5444-01 9 129937010 129937010 G A RALGPS1 Missense_Mutation p.E287K 0.06 deleterious(0) probably_damaging(0.972) TCGA-CV-5444-01 9 131830488 131830488 G A FAM73B Missense_Mutation p.M427I 0.18 tolerated(0.07) possibly_damaging(0.619) TCGA-CV-5444-01 9 135462894 135462894 C T BARHL1 Silent p.L215L 0.14 TCGA-CV-5444-01 9 136671217 136671217 G A VAV2 Silent p.L274L 0.09 TCGA-CV-5444-01 9 139701235 139701235 C T CCDC183 Silent p.L435L 0.04 TCGA-CV-5444-01 9 21970900 21970900 C T CDKN2A Splice_Site p.X153_splice 0.17 TCGA-CV-5444-01 9 21970901 21970901 C T CDKN2A Missense_Mutation p.E153K 0.17 tolerated_low_confidence(0.09) benign(0.019) TCGA-CV-5444-01 9 79325493 79325493 T C PRUNE2 Missense_Mutation p.H566R 0.38 deleterious(0) benign(0.003) TCGA-CV-5444-01 X 22095598 22095598 G A PHEX Silent p.A147A 0.29 TCGA-CV-5966-01 10 117704198 117704198 A G ATRNL1 Missense_Mutation p.I1350V 0.30 tolerated(0.74) benign(0.006) TCGA-CV-5966-01 10 117704311 117704311 A G ATRNL1 3'UTR 0.32 TCGA-CV-5966-01 10 63661489 63661489 G A ARID5B Silent p.Q7Q 0.16 TCGA-CV-5966-01 10 70204742 70204742 T C DNA2 Missense_Mutation p.I472V 0.31 tolerated(0.49) benign(0.005) TCGA-CV-5966-01 10 79569435 79569435 T C DLG5 Missense_Mutation p.K1506R 0.30 tolerated(0.38) benign(0.02) TCGA-CV-5966-01 10 87615919 87615919 A G GRID1 Missense_Mutation p.V327A 0.30 deleterious(0) probably_damaging(0.997) TCGA-CV-5966-01 11 129827743 129827743 G A PRDM10 Silent p.R44R 0.22 TCGA-CV-5966-01 11 19209725 19209725 A T CSRP3 Missense_Mutation p.L80H 0.14 deleterious(0) probably_damaging(0.92) TCGA-CV-5966-01 11 26581216 26581216 T C MUC15 3'UTR 0.17 TCGA-CV-5966-01 11 33308310 33308310 A G HIPK3 Missense_Mutation p.H117R 0.22 tolerated(0.16) benign(0.013) TCGA-CV-5966-01 11 43923092 43923092 G C ALKBH3 Missense_Mutation p.K162N 0.26 tolerated(0.06) probably_damaging(0.997) TCGA-CV-5966-01 11 6662135 6662135 G T DCHS1 Missense_Mutation p.A237D 0.17 tolerated(0.34) benign(0.027) TCGA-CV-5966-01 11 71717271 71717271 C T NUMA1 Silent p.S1834S 0.10 TCGA-CV-5966-01 11 8728695 8728695 C T ST5 Silent p.S836S 0.24 TCGA-CV-5966-01 12 119917004 119917004 C G CCDC60 Missense_Mutation p.H149Q 0.15 tolerated(0.08) benign(0.296) TCGA-CV-5966-01 12 122369654 122369654 C T WDR66 Silent p.T250T 0.10 TCGA-CV-5966-01 12 124371815 124371815 G A DNAH10 Missense_Mutation p.A2866T 0.16 possibly_damaging(0.673) TCGA-CV-5966-01 12 40715964 40715964 A T LRRK2 Silent p.T1766T 0.20 TCGA-CV-5966-01 12 56091493 56091493 G A ITGA7 Silent p.T469T 0.25 TCGA-CV-5966-01 13 47345545 47345546 - T ESD 3'UTR 0.30 TCGA-CV-5966-01 13 53048164 53048164 A G CKAP2 Missense_Mutation p.T584A 0.21 tolerated(0.14) benign(0.005) TCGA-CV-5966-01 13 72440352 72440352 G A DACH1 Nonsense_Mutation p.Q186* 0.24 TCGA-CV-5966-01 13 77625998 77625998 T C MYCBP2 Missense_Mutation p.Y4530C 0.26 probably_damaging(0.995) TCGA-CV-5966-01 13 77672743 77672743 T C MYCBP2 Missense_Mutation p.N2811S 0.28 benign(0.002) TCGA-CV-5966-01 13 80911560 80911560 A C SPRY2 Missense_Mutation p.L94R 0.22 tolerated(0.35) benign(0.062) TCGA-CV-5966-01 14 20612330 20612330 T C OR4N5 Silent p.L146L 0.09 TCGA-CV-5966-01 14 65390788 65390788 T C CHURC1-FNTB Missense_Mutation p.L41P 0.20 deleterious_low_confidence(0) benign(0.3) TCGA-CV-5966-01 16 23117549 23117549 G A USP31 Missense_Mutation p.P313L 0.16 deleterious(0.02) probably_damaging(1) TCGA-CV-5966-01 16 30002109 30002109 G A TAOK2 3'Flank 0.26 TCGA-CV-5966-01 16 53289642 53289642 C T CHD9 Missense_Mutation p.T1387I 0.10 probably_damaging(0.986) TCGA-CV-5966-01 16 56974084 56974084 C T HERPUD1 Missense_Mutation p.L278F 0.53 deleterious(0) probably_damaging(0.924) TCGA-CV-5966-01 16 57188404 57188404 T G FAM192A Missense_Mutation p.K188T 0.17 tolerated(0.56) benign(0.011) TCGA-CV-5966-01 16 614994 614994 C G C16orf11 Missense_Mutation p.S468C 0.17 deleterious(0) probably_damaging(1) TCGA-CV-5966-01 16 68712178 68712178 C G CDH3 Missense_Mutation p.Q130E 0.20 deleterious(0) probably_damaging(0.953) TCGA-CV-5966-01 16 88870221 88870221 C T CDT1 5'UTR 0.31 TCGA-CV-5966-01 17 19605988 19605988 C G SLC47A2 Splice_Site p.X401_splice 0.32 TCGA-CV-5966-01 17 2867251 2867251 G C RAP1GAP2 Silent p.G127G 0.21 TCGA-CV-5966-01 17 7578479 7578479 G T TP53 Missense_Mutation p.P151T 0.41 deleterious(0) probably_damaging(0.983) TCGA-CV-5966-01 18 19424087 19424087 A T MIB1 Missense_Mutation p.Q695L 0.09 deleterious(0.04) benign(0.05) TCGA-CV-5966-01 18 46238063 46238063 G A CTIF Missense_Mutation p.R194Q 0.32 tolerated_low_confidence(0.09) benign(0.358) TCGA-CV-5966-01 18 909585 909585 G C ADCYAP1 Missense_Mutation p.K160N 0.06 deleterious(0.05) probably_damaging(0.987) TCGA-CV-5966-01 18 9257171 9257171 A G ANKRD12 Silent p.R1302R 0.41 TCGA-CV-5966-01 19 20728770 20728770 T G ZNF737 Missense_Mutation p.H80P 0.17 deleterious(0.02) probably_damaging(0.914) TCGA-CV-5966-01 19 2276476 2276476 C T C19orf35 Missense_Mutation p.G209R 0.28 tolerated(0.19) benign(0.097) TCGA-CV-5966-01 19 36124784 36124784 G A RBM42 Missense_Mutation p.E294K 0.26 tolerated(0.13) unknown(0) TCGA-CV-5966-01 19 37879538 37879538 A T ZNF527 Missense_Mutation p.Y196F 0.11 tolerated(0.7) benign(0.006) TCGA-CV-5966-01 19 53384668 53384668 T A ZNF320 Missense_Mutation p.R237S 0.12 deleterious(0.01) possibly_damaging(0.635) TCGA-CV-5966-01 19 7550795 7550795 T A PEX11G Missense_Mutation p.R60W 0.29 deleterious(0) probably_damaging(1) TCGA-CV-5966-01 19 7916349 7916349 C T EVI5L Silent p.F261F 0.13 TCGA-CV-5966-01 19 985937 985937 G A WDR18 Missense_Mutation p.V95I 0.09 tolerated(0.62) benign(0.009) TCGA-CV-5966-01 1 109514033 109514033 G T WDR47 3'UTR 0.22 TCGA-CV-5966-01 1 11297982 11297982 T C MTOR Missense_Mutation p.E709G 0.24 deleterious(0) probably_damaging(0.986) TCGA-CV-5966-01 1 13497673 13497673 G C PRAMEF16 Missense_Mutation p.E324Q 0.14 tolerated(0.54) benign(0.011) TCGA-CV-5966-01 1 13718507 13718507 G C PRAMEF17 Missense_Mutation p.E324Q 0.33 tolerated(0.54) benign(0.007) TCGA-CV-5966-01 1 152057405 152057405 T A TCHHL1 3'UTR 0.18 TCGA-CV-5966-01 1 155006045 155006045 G T DCST2 Missense_Mutation p.L45I 0.17 tolerated(0.07) possibly_damaging(0.788) TCGA-CV-5966-01 1 155018958 155018958 C A DCST1 Missense_Mutation p.F497L 0.20 tolerated(0.06) possibly_damaging(0.679) TCGA-CV-5966-01 1 155736338 155736338 C T GON4L Missense_Mutation p.G976S 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-CV-5966-01 1 156926233 156926233 C T ARHGEF11 Silent p.P550P 0.19 TCGA-CV-5966-01 1 157103862 157103862 C G ETV3 Intron 0.21 TCGA-CV-5966-01 1 158326543 158326543 C T CD1E Missense_Mutation p.H342Y 0.14 tolerated(1) benign(0.003) TCGA-CV-5966-01 1 161953453 161953453 G T OLFML2B 3'UTR 0.18 TCGA-CV-5966-01 1 19653876 19653876 C T PQLC2 Silent p.G258G 0.17 TCGA-CV-5966-01 1 207072852 207072852 G A IL24 Missense_Mutation p.D79N 0.19 tolerated(0.17) benign(0.058) TCGA-CV-5966-01 1 76255009 76255009 C - RABGGTB Frame_Shift_Del p.P93Lfs*24 0.18 TCGA-CV-5966-01 20 44507028 44507028 G A ZSWIM3 Missense_Mutation p.E611K 0.18 tolerated(0.35) benign(0.176) TCGA-CV-5966-01 21 34932318 34932318 G A SON Intron 0.36 TCGA-CV-5966-01 21 46011580 46011580 G T KRTAP10-6 Silent p.T262T 0.25 TCGA-CV-5966-01 22 26932363 26932363 C T TPST2 Missense_Mutation p.R311Q 0.16 tolerated(0.41) benign(0.002) TCGA-CV-5966-01 22 31492832 31492832 G A SMTN Missense_Mutation p.D659N 0.27 deleterious(0.02) benign(0.048) TCGA-CV-5966-01 2 11053801 11053801 C T KCNF1 Missense_Mutation p.R417C 0.23 deleterious(0.01) possibly_damaging(0.732) TCGA-CV-5966-01 2 159477835 159477835 G A PKP4 Missense_Mutation p.V169M 0.10 tolerated(0.11) benign(0.001) TCGA-CV-5966-01 2 172951395 172951395 G A DLX1 Silent p.E109E 0.19 TCGA-CV-5966-01 2 202131498 202131498 C T CASP8 Nonsense_Mutation p.Q156* 0.22 TCGA-CV-5966-01 2 240969562 240969562 G T OR6B2 Silent p.V95V 0.13 TCGA-CV-5966-01 2 62067206 62067206 C A FAM161A Missense_Mutation p.K311N 0.11 deleterious(0) probably_damaging(0.962) TCGA-CV-5966-01 2 69093551 69093551 G T BMP10 Silent p.R163R 0.08 TCGA-CV-5966-01 2 87013005 87013005 A T CD8A 3'UTR 0.18 TCGA-CV-5966-01 3 111697969 111697969 G T ABHD10 Missense_Mutation p.A21S 0.14 tolerated_low_confidence(0.15) benign(0.008) TCGA-CV-5966-01 3 112324383 112324383 G A CCDC80 Missense_Mutation p.R912C 0.07 deleterious(0) probably_damaging(0.982) TCGA-CV-5966-01 3 159713493 159713493 A T IL12A 3'UTR 0.18 TCGA-CV-5966-01 3 194118839 194118839 A T GP5 Missense_Mutation p.F58Y 0.37 tolerated(0.41) benign(0.003) TCGA-CV-5966-01 3 71247175 71247175 C T FOXP1 Nonsense_Mutation p.W75* 0.26 TCGA-CV-5966-01 3 86114798 86114798 C T CADM2 Silent p.L371L 0.23 TCGA-CV-5966-01 4 110758732 110758732 G T RRH Missense_Mutation p.D231Y 0.22 tolerated(0.06) benign(0.202) TCGA-CV-5966-01 4 148539033 148539033 C T TMEM184C 5'UTR 0.25 TCGA-CV-5966-01 4 164394114 164394114 G T TKTL2 Missense_Mutation p.A258E 0.21 tolerated(0.75) benign(0.046) TCGA-CV-5966-01 4 175232005 175232005 T G CEP44 Missense_Mutation p.N319K 0.24 tolerated(0.31) benign(0.009) TCGA-CV-5966-01 4 187524850 187524850 G C FAT1 Nonsense_Mutation p.Y3610* 0.23 TCGA-CV-5966-01 4 2065645 2065645 G A NAT8L Missense_Mutation p.E234K 0.20 deleterious(0.01) possibly_damaging(0.468) TCGA-CV-5966-01 4 39512453 39512453 A G UGDH Missense_Mutation p.M98T 0.22 tolerated(0.16) benign(0.062) TCGA-CV-5966-01 4 47898591 47898591 G A NFXL1 Silent p.I426I 0.17 TCGA-CV-5966-01 4 70156431 70156431 T A UGT2B28 Silent p.A404A 0.16 TCGA-CV-5966-01 4 70156461 70156461 A T UGT2B28 Missense_Mutation p.R414S 0.12 tolerated(0.37) benign(0.004) TCGA-CV-5966-01 4 70156462 70156462 C T UGT2B28 Silent p.L415L 0.12 TCGA-CV-5966-01 4 77661382 77661382 G A SHROOM3 Missense_Mutation p.E686K 0.42 deleterious(0.04) benign(0.194) TCGA-CV-5966-01 5 102894926 102894926 A T NUDT12 Missense_Mutation p.F150L 0.16 deleterious(0.01) benign(0.079) TCGA-CV-5966-01 5 132069993 132069993 T G KIF3A Missense_Mutation p.T62P 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-CV-5966-01 5 140188217 140188217 C T PCDHA4 Missense_Mutation p.A482V 0.21 deleterious_low_confidence(0.03) benign(0.177) TCGA-CV-5966-01 5 140558908 140558908 G C PCDHB8 Missense_Mutation p.R431S 0.20 deleterious_low_confidence(0.03) benign(0.023) TCGA-CV-5966-01 5 140627104 140627104 C T PCDHB15 Missense_Mutation p.S653L 0.23 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-CV-5966-01 5 141974914 141974914 G A FGF1 Missense_Mutation p.R137W 0.25 deleterious(0) probably_damaging(0.912) TCGA-CV-5966-01 5 145878147 145878147 C G TCERG1 Missense_Mutation p.F760L 0.27 deleterious(0) unknown(0) TCGA-CV-5966-01 5 160063201 160063201 G T ATP10B Silent p.I372I 0.16 TCGA-CV-5966-01 5 82817939 82817939 G A VCAN Missense_Mutation p.E1272K 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-CV-5966-01 5 93294538 93294538 T C FAM172A Missense_Mutation p.I171V 0.17 tolerated(0.32) possibly_damaging(0.517) TCGA-CV-5966-01 6 111587430 111587430 G A KIAA1919 Missense_Mutation p.R222Q 0.28 tolerated(0.21) benign(0.022) TCGA-CV-5966-01 6 117687343 117687343 A C ROS1 Missense_Mutation p.I903S 0.13 tolerated(0.38) benign(0.118) TCGA-CV-5966-01 6 122777667 122777667 T C SERINC1 Silent p.K110K 0.20 TCGA-CV-5966-01 6 136597369 136597369 C T BCLAF1 Missense_Mutation p.E432K 0.06 tolerated(0.06) possibly_damaging(0.486) TCGA-CV-5966-01 6 136710510 136710510 C G MAP7 Missense_Mutation p.Q152H 0.18 deleterious(0) probably_damaging(0.997) TCGA-CV-5966-01 6 152694261 152694261 C T SYNE1 Missense_Mutation p.A3140T 0.19 benign(0.059) TCGA-CV-5966-01 6 27115271 27115271 G A HIST1H2AH Missense_Mutation p.E122K 0.10 tolerated_low_confidence(0.21) benign(0.014) TCGA-CV-5966-01 6 31749380 31749380 C T VARS Missense_Mutation p.E808K 0.24 tolerated(0.46) benign(0.06) TCGA-CV-5966-01 6 32008981 32008981 C T CYP21A2 3'UTR 0.36 TCGA-CV-5966-01 6 41655657 41655657 C T TFEB Missense_Mutation p.R220Q 0.21 deleterious(0.04) benign(0.007) TCGA-CV-5966-01 7 100457855 100457855 G A SLC12A9 Splice_Site p.X406_splice 0.24 TCGA-CV-5966-01 7 100859997 100859997 C T PLOD3 Silent p.E60E 0.21 TCGA-CV-5966-01 7 11630197 11630197 C T THSD7A Missense_Mutation p.R448H 0.21 tolerated(0.22) probably_damaging(0.972) TCGA-CV-5966-01 7 117292972 117292972 A C CFTR Missense_Mutation p.K1317T 0.19 tolerated(0.1) benign(0.01) TCGA-CV-5966-01 7 24324986 24324986 G A NPY Missense_Mutation p.E43K 0.20 deleterious(0) probably_damaging(0.998) TCGA-CV-5966-01 7 48146983 48146983 C G UPP1 Silent p.L224L 0.36 TCGA-CV-5966-01 7 64167053 64167053 G A ZNF107 Missense_Mutation p.R124K 0.18 tolerated(0.21) benign(0.026) TCGA-CV-5966-01 7 82585177 82585177 C T PCLO Missense_Mutation p.E1698K 0.24 unknown(0) TCGA-CV-5966-01 8 104453792 104453792 C G DCAF13 Missense_Mutation p.S551C 0.18 tolerated(0.2) benign(0.029) TCGA-CV-5966-01 8 109465334 109465334 G C EMC2 Missense_Mutation p.R88T 0.15 deleterious(0) probably_damaging(0.983) TCGA-CV-5966-01 8 145150852 145150852 G C CYC1 Silent p.V82V 0.14 TCGA-CV-5966-01 8 21986633 21986633 C T HR Silent p.T17T 0.04 TCGA-CV-5966-01 8 26627932 26627932 C T ADRA1A Missense_Mutation p.V379M 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.742) TCGA-CV-5966-01 8 97247850 97247850 G A UQCRB 5'Flank 0.22 TCGA-CV-5966-01 9 115232841 115232841 A G HSDL2 3'UTR 0.38 TCGA-CV-5966-01 9 116930511 116930511 C T COL27A1 Missense_Mutation p.H226Y 0.28 unknown(0) TCGA-CV-5966-01 9 137620520 137620520 C T COL5A1 Missense_Mutation p.T264M 0.21 probably_damaging(0.932) TCGA-CV-5966-01 9 137716559 137716559 C T COL5A1 Silent p.Y1604Y 0.29 TCGA-CV-5966-01 9 139409935 139409936 - TG NOTCH1 Frame_Shift_Ins p.G635Qfs*138 0.29 TCGA-CV-5966-01 9 15185309 15185309 G A TTC39B Missense_Mutation p.P528L 0.29 deleterious(0.01) possibly_damaging(0.608) TCGA-CV-5966-01 9 20981679 20981679 G C FOCAD Missense_Mutation p.K1544N 0.09 tolerated(0.14) benign(0.428) TCGA-CV-5966-01 9 91978793 91978793 T - SECISBP2 3'Flank 0.12 TCGA-CV-5966-01 X 100240775 100240775 A T ARL13A Missense_Mutation p.N84Y 0.38 deleterious(0) probably_damaging(0.934) TCGA-CV-5966-01 X 107979062 107979062 G A IRS4 Silent p.F171F 0.10 TCGA-CV-5966-01 X 117775197 117775197 G T DOCK11 Nonsense_Mutation p.E1397* 0.25 TCGA-CV-5966-01 X 117959641 117959641 C T ZCCHC12 Missense_Mutation p.A145V 0.23 tolerated(0.88) benign(0.01) TCGA-CV-5966-01 X 138724625 138724625 A T MCF2 Intron 0.17 TCGA-CV-5966-01 X 145082599 145082599 C T MIR891B RNA 0.17 TCGA-CV-5966-01 X 18668577 18668577 G A CDKL5 Missense_Mutation p.V949I 0.27 deleterious_low_confidence(0) benign(0.103) TCGA-CV-5966-01 X 68381831 68381831 A C PJA1 Silent p.P417P 0.13 TCGA-CV-5966-01 X 73062364 73062364 A G XIST RNA 0.10 TCGA-CV-5970-01 10 101439180 101439180 G A ENTPD7 Missense_Mutation p.M118I 0.12 deleterious(0.01) possibly_damaging(0.837) TCGA-CV-5970-01 10 102035122 102035122 G C BLOC1S2 3'UTR 0.11 TCGA-CV-5970-01 10 106075039 106075039 G A ITPRIP Silent p.C257C 0.33 TCGA-CV-5970-01 10 3189404 3189404 G C PITRM1 Missense_Mutation p.I759M 0.14 tolerated(0.23) benign(0.027) TCGA-CV-5970-01 10 48414496 48414496 C T GDF2 Silent p.E124E 0.12 TCGA-CV-5970-01 10 64979732 64979732 G C JMJD1C Missense_Mutation p.D153E 0.19 tolerated(0.11) benign(0.015) TCGA-CV-5970-01 10 68857399 68857399 A C LRRTM3 Missense_Mutation p.S531R 0.10 tolerated_low_confidence(0.12) benign(0.003) TCGA-CV-5970-01 10 7409703 7409703 C T SFMBT2 Missense_Mutation p.R115H 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-5970-01 11 106558198 106558198 A G GUCY1A2 3'UTR 0.31 TCGA-CV-5970-01 11 14490304 14490304 G A COPB1 Nonsense_Mutation p.Q690* 0.11 TCGA-CV-5970-01 11 55135812 55135812 C A OR4A15 Nonsense_Mutation p.Y151* 0.18 TCGA-CV-5970-01 11 55798369 55798369 C T OR5AS1 Missense_Mutation p.H159Y 0.37 deleterious(0.03) probably_damaging(0.966) TCGA-CV-5970-01 11 61558011 61558011 C T TMEM258 Missense_Mutation p.V23M 0.38 tolerated(0.29) benign(0.085) TCGA-CV-5970-01 11 64120247 64120247 G A CCDC88B Missense_Mutation p.V1130M 0.06 deleterious(0.02) possibly_damaging(0.809) TCGA-CV-5970-01 11 64678743 64678743 C T ATG2A Silent p.K411K 0.37 TCGA-CV-5970-01 11 64825688 64825688 G A NAALADL1 Missense_Mutation p.P74S 0.13 tolerated(0.27) benign(0.015) TCGA-CV-5970-01 11 65124729 65124729 C G TIGD3 3'UTR 0.14 TCGA-CV-5970-01 11 68131338 68131338 G A LRP5 Silent p.K270K 0.09 TCGA-CV-5970-01 11 70281261 70281261 G A CTTN Intron 0.22 TCGA-CV-5970-01 11 73073640 73073640 G T ARHGEF17 Missense_Mutation p.M1619I 0.10 tolerated(0.06) benign(0) TCGA-CV-5970-01 11 75299192 75299192 G A MAP6 Nonsense_Mutation p.Q452* 0.23 TCGA-CV-5970-01 11 77590009 77590009 G C INTS4 Missense_Mutation p.P960A 0.09 deleterious(0.01) possibly_damaging(0.906) TCGA-CV-5970-01 11 85396236 85396236 C T CCDC89 Missense_Mutation p.R313Q 0.22 tolerated(0.08) probably_damaging(0.998) TCGA-CV-5970-01 12 109972546 109972546 C T UBE3B Missense_Mutation p.R1056C 0.15 deleterious(0) probably_damaging(0.998) TCGA-CV-5970-01 12 120636693 120636693 G A RPLP0 Silent p.I143I 0.12 TCGA-CV-5970-01 12 12232347 12232347 C G BCL2L14 Missense_Mutation p.F36L 0.25 tolerated(0.18) benign(0.039) TCGA-CV-5970-01 12 20903736 20903736 C G SLCO1C1 Missense_Mutation p.I642M 0.13 deleterious(0.01) benign(0.004) TCGA-CV-5970-01 12 27841992 27841992 G A PPFIBP1 Silent p.L853L 0.12 TCGA-CV-5970-01 12 31945119 31945119 G A H3F3C 5'UTR 0.17 TCGA-CV-5970-01 12 3757747 3757747 C T EFCAB4B Missense_Mutation p.R360H 0.14 deleterious(0) probably_damaging(0.996) TCGA-CV-5970-01 12 42853994 42854008 TGTACAGCCGCAGTC - PRICKLE1 In_Frame_Del p.R700_Y704del 0.13 TCGA-CV-5970-01 12 45810577 45810577 G A ANO6 Missense_Mutation p.A724T 0.24 deleterious(0) probably_damaging(0.98) TCGA-CV-5970-01 12 48367873 48367873 G A COL2A1 Missense_Mutation p.T1439M 0.11 unknown(0) TCGA-CV-5970-01 12 50616056 50616056 G A LIMA1 Silent p.P126P 0.16 TCGA-CV-5970-01 12 53227934 53227934 C T KRT79 Silent p.T37T 0.11 TCGA-CV-5970-01 12 54428313 54428313 C T HOXC5 3'UTR 0.30 TCGA-CV-5970-01 12 6135131 6135131 C T VWF Missense_Mutation p.D1017N 0.17 tolerated(0.08) probably_damaging(0.956) TCGA-CV-5970-01 12 6690555 6690555 C G CHD4 Splice_Site p.X1561_splice 0.09 TCGA-CV-5970-01 12 6979473 6979473 G A TPI1 Missense_Mutation p.D263N 0.25 deleterious(0.03) probably_damaging(0.961) TCGA-CV-5970-01 12 78531084 78531084 T G NAV3 Silent p.S1523S 0.14 TCGA-CV-5970-01 12 85554449 85554449 A C LRRIQ1 Missense_Mutation p.K1593N 0.07 tolerated(0.06) benign(0.037) TCGA-CV-5970-01 12 9349219 9349219 C T PZP Silent p.T310T 0.16 TCGA-CV-5970-01 12 95694420 95694420 G C VEZT Missense_Mutation p.E771Q 0.15 tolerated_low_confidence(0.23) unknown(0) TCGA-CV-5970-01 12 97328772 97328772 T C NEDD1 Missense_Mutation p.Y177H 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-5970-01 13 113832567 113832567 T A PCID2 Missense_Mutation p.Q436L 0.47 deleterious(0.01) possibly_damaging(0.454) TCGA-CV-5970-01 13 58208055 58208055 G T PCDH17 Missense_Mutation p.A459S 0.14 tolerated(0.42) benign(0.039) TCGA-CV-5970-01 13 98671904 98671904 C T IPO5 Missense_Mutation p.T987I 0.21 deleterious(0) benign(0.386) TCGA-CV-5970-01 13 99907960 99907960 G A GPR18 Missense_Mutation p.T56M 0.33 deleterious(0.02) probably_damaging(0.984) TCGA-CV-5970-01 14 101407483 101407483 G A SNORD113-7 RNA 0.27 TCGA-CV-5970-01 14 24424278 24424278 G T DHRS4 Missense_Mutation p.D55Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-5970-01 14 24546188 24546188 G A CPNE6 Silent p.P422P 0.16 TCGA-CV-5970-01 14 50262630 50262630 G C NEMF Nonsense_Mutation p.S833* 0.12 TCGA-CV-5970-01 14 57101623 57101623 T G TMEM260 Missense_Mutation p.D577E 0.23 tolerated(0.16) benign(0.003) TCGA-CV-5970-01 14 75567725 75567725 C T NEK9 Missense_Mutation p.G658S 0.39 deleterious(0) probably_damaging(1) TCGA-CV-5970-01 14 77942421 77942421 C G ISM2 Missense_Mutation p.K411N 0.16 deleterious(0) probably_damaging(0.937) TCGA-CV-5970-01 14 90759044 90759044 T C NRDE2 Silent p.R613R 0.16 TCGA-CV-5970-01 15 31295039 31295039 G A TRPM1 Silent p.S1305S 0.19 TCGA-CV-5970-01 15 85327115 85327115 G C ZNF592 Missense_Mutation p.K403N 0.17 deleterious(0.04) possibly_damaging(0.794) TCGA-CV-5970-01 15 88483978 88483978 T C NTRK3 Missense_Mutation p.Q531R 0.20 tolerated(0.23) benign(0.003) TCGA-CV-5970-01 15 89424833 89424833 C T HAPLN3 Missense_Mutation p.R83H 0.25 tolerated(0.14) benign(0.035) TCGA-CV-5970-01 15 99672905 99672905 C T SYNM Missense_Mutation p.T1446M 0.23 deleterious(0.02) benign(0.024) TCGA-CV-5970-01 16 15131880 15131880 C T NTAN1 3'UTR 0.19 TCGA-CV-5970-01 16 28883644 28883644 C T SH2B1 Silent p.H549H 0.20 TCGA-CV-5970-01 16 31105715 31105715 G T VKORC1 Intron 0.07 TCGA-CV-5970-01 16 50583366 50583366 G A NKD1 Missense_Mutation p.R31Q 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-CV-5970-01 16 58001097 58001097 C G CNGB1 Missense_Mutation p.E32Q 0.17 tolerated_low_confidence(0.1) benign(0.378) TCGA-CV-5970-01 16 65032724 65032724 A G CDH11 Silent p.I88I 0.15 TCGA-CV-5970-01 16 68200760 68200760 G C NFATC3 Missense_Mutation p.G539A 0.26 deleterious(0) probably_damaging(1) TCGA-CV-5970-01 16 77325197 77325197 A C ADAMTS18 Missense_Mutation p.M1123R 0.15 tolerated(0.63) benign(0) TCGA-CV-5970-01 16 818647 818647 G T MSLN Splice_Site p.X603_splice 0.19 TCGA-CV-5970-01 16 84353096 84353096 G A WFDC1 Missense_Mutation p.E161K 0.27 deleterious(0.05) benign(0.028) TCGA-CV-5970-01 16 86612542 86612542 G A FOXL1 Silent p.T71T 0.27 TCGA-CV-5970-01 16 90016035 90016035 G A DEF8 Silent p.T54T 0.17 TCGA-CV-5970-01 16 9934948 9934948 C T GRIN2A Missense_Mutation p.E448K 0.19 tolerated(0.54) benign(0.315) TCGA-CV-5970-01 17 21825525 21825525 G A FAM27L RNA 0.26 TCGA-CV-5970-01 17 27045165 27045165 G C RAB34 Missense_Mutation p.R41G 0.20 deleterious_low_confidence(0.04) benign(0) TCGA-CV-5970-01 17 32583342 32583342 C A CCL2 Missense_Mutation p.P60T 0.33 deleterious(0.03) possibly_damaging(0.718) TCGA-CV-5970-01 17 38073560 38073560 C T GSDMB Missense_Mutation p.V4I 0.27 tolerated(0.46) benign(0.003) TCGA-CV-5970-01 17 5009153 5009153 C T ZNF232 Missense_Mutation p.R434Q 0.18 tolerated(1) benign(0) TCGA-CV-5970-01 17 51900368 51900368 C T KIF2B 5'UTR 0.30 TCGA-CV-5970-01 17 57990070 57990070 G A RPS6KB1 Missense_Mutation p.E73K 0.13 deleterious(0.02) probably_damaging(0.974) TCGA-CV-5970-01 17 72959983 72959983 C A HID1 Missense_Mutation p.G80V 0.33 tolerated(0.35) benign(0.013) TCGA-CV-5970-01 17 73851273 73851273 C G WBP2 Intron 0.21 TCGA-CV-5970-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.35 deleterious(0) probably_damaging(1) TCGA-CV-5970-01 17 78120703 78120703 C G EIF4A3 Missense_Mutation p.E20Q 0.12 tolerated_low_confidence(0.11) benign(0.032) TCGA-CV-5970-01 17 78938109 78938109 G A RPTOR Silent p.S1329S 0.32 TCGA-CV-5970-01 18 31325516 31325516 C G ASXL3 Missense_Mutation p.P1902A 0.06 probably_damaging(0.998) TCGA-CV-5970-01 18 42529990 42529990 G T SETBP1 Nonsense_Mutation p.G229* 0.13 TCGA-CV-5970-01 18 47811188 47811188 C T CXXC1 Missense_Mutation p.E312K 0.16 tolerated(0.08) benign(0.001) TCGA-CV-5970-01 18 47811201 47811201 C T CXXC1 Missense_Mutation p.M307I 0.21 tolerated(0.44) benign(0.002) TCGA-CV-5970-01 18 52571634 52571634 G A CCDC68 Silent p.T321T 0.23 TCGA-CV-5970-01 18 908272 908272 C G ADCYAP1 Silent p.V83V 0.12 TCGA-CV-5970-01 19 10610149 10610149 G A KEAP1 Silent p.I187I 0.08 TCGA-CV-5970-01 19 11598248 11598248 C T ZNF653 Missense_Mutation p.G344S 0.53 tolerated(0.62) benign(0.021) TCGA-CV-5970-01 19 13029104 13029104 C A SYCE2 Missense_Mutation p.L21F 0.24 tolerated_low_confidence(0.11) benign(0.018) TCGA-CV-5970-01 19 1581180 1581180 G C MBD3 Silent p.L196L 0.25 TCGA-CV-5970-01 19 17922878 17922878 G A B3GNT3 Missense_Mutation p.D356N 0.30 tolerated(0.51) benign(0.02) TCGA-CV-5970-01 19 18420497 18420497 C T LSM4 Missense_Mutation p.A107T 0.17 tolerated(0.11) possibly_damaging(0.499) TCGA-CV-5970-01 19 19372352 19372352 G A HAPLN4 Silent p.L8L 0.29 TCGA-CV-5970-01 19 40842076 40842076 C T C19orf47 Missense_Mutation p.V92M 0.12 deleterious(0) probably_damaging(0.94) TCGA-CV-5970-01 19 42260722 42260722 C T CEACAM6 Silent p.P93P 0.41 TCGA-CV-5970-01 19 43382154 43382154 C T PSG1 Missense_Mutation p.R114Q 0.51 tolerated(1) benign(0.001) TCGA-CV-5970-01 19 46832529 46832529 C G HIF3A Silent p.L502L 0.17 TCGA-CV-5970-01 19 47278748 47278748 G A SLC1A5 3'UTR 0.36 TCGA-CV-5970-01 19 49422529 49422529 G A NUCB1 Missense_Mutation p.G330R 0.15 tolerated(0.1) benign(0.232) TCGA-CV-5970-01 19 49910549 49910549 C T CCDC155 Missense_Mutation p.S310F 0.12 deleterious(0.03) benign(0.311) TCGA-CV-5970-01 19 50861932 50861932 A T NAPSA Missense_Mutation p.Y381N 0.22 deleterious(0) possibly_damaging(0.826) TCGA-CV-5970-01 19 55301663 55301663 C G CTB-61M7.1 RNA 0.17 TCGA-CV-5970-01 19 56953259 56953259 G T ZNF667 Silent p.R369R 0.52 TCGA-CV-5970-01 19 6670018 6670018 G A TNFSF14 Silent p.F21F 0.18 TCGA-CV-5970-01 19 8381382 8381382 C G NDUFA7 Missense_Mutation p.E83D 0.14 tolerated(0.27) benign(0.006) TCGA-CV-5970-01 19 8551905 8551905 C T HNRNPM Intron 0.13 TCGA-CV-5970-01 1 11080498 11080498 G C TARDBP Missense_Mutation p.E186Q 0.11 tolerated(0.42) benign(0.017) TCGA-CV-5970-01 1 145473612 145473612 C T ANKRD34A Missense_Mutation p.S95L 0.15 deleterious(0) benign(0.131) TCGA-CV-5970-01 1 145473671 145473671 C G ANKRD34A Missense_Mutation p.L115V 0.17 deleterious(0) probably_damaging(0.995) TCGA-CV-5970-01 1 155160217 155160217 C T MUC1 Silent p.L354L 0.23 TCGA-CV-5970-01 1 165678677 165678677 G C RP11-466F5.10 5'Flank 0.25 TCGA-CV-5970-01 1 197396601 197396601 T C CRB1 Missense_Mutation p.F716L 0.15 deleterious(0) probably_damaging(0.957) TCGA-CV-5970-01 1 204408140 204408140 C T PIK3C2B Missense_Mutation p.V1147M 0.33 deleterious(0) probably_damaging(0.998) TCGA-CV-5970-01 1 207966950 207966950 C A CD46 3'UTR 0.20 TCGA-CV-5970-01 1 20975048 20975048 G A PINK1 Missense_Mutation p.E392K 0.09 tolerated(0.51) benign(0.033) TCGA-CV-5970-01 1 21103166 21103166 C T HP1BP3 Missense_Mutation p.E92K 0.16 deleterious(0.01) probably_damaging(0.931) TCGA-CV-5970-01 1 211652374 211652374 G A RD3 3'UTR 0.20 TCGA-CV-5970-01 1 216680189 216680189 T A ESRRG 3'UTR 0.25 TCGA-CV-5970-01 1 234565343 234565358 GAGAGGCACACCCATT - TARBP1 Frame_Shift_Del p.Q892Lfs*4 0.17 TCGA-CV-5970-01 1 236189239 236189239 C A NID1 Missense_Mutation p.K647N 0.19 tolerated(0.06) benign(0.009) TCGA-CV-5970-01 1 24978971 24978971 G C SRRM1 Missense_Mutation p.E258Q 0.10 unknown(0) TCGA-CV-5970-01 1 43778831 43778831 C T TIE1 Silent p.H651H 0.11 TCGA-CV-5970-01 1 44303969 44303969 G A ST3GAL3 Silent p.T165T 0.14 TCGA-CV-5970-01 1 53459044 53459044 G A SCP2 Intron 0.17 TCGA-CV-5970-01 1 54610233 54610233 C G CDCP2 Silent p.P111P 0.22 TCGA-CV-5970-01 1 70618219 70618219 C G LRRC40 Missense_Mutation p.E446Q 0.16 tolerated(0.13) benign(0.067) TCGA-CV-5970-01 1 77806120 77806120 G C AK5 Missense_Mutation p.R253T 0.12 deleterious(0) probably_damaging(0.995) TCGA-CV-5970-01 1 8390837 8390837 C T SLC45A1 Silent p.S428S 0.12 TCGA-CV-5970-01 20 18168174 18168174 G A CSRP2BP 3'UTR 0.18 TCGA-CV-5970-01 20 31291246 31291246 G C COMMD7 Missense_Mutation p.Q181E 0.12 deleterious(0.04) possibly_damaging(0.708) TCGA-CV-5970-01 20 31813054 31813054 G T BPIFA3 Splice_Site p.X179_splice 0.09 TCGA-CV-5970-01 20 32685311 32685311 C A EIF2S2 Nonsense_Mutation p.E149* 0.12 TCGA-CV-5970-01 20 33529522 33529522 G A GSS Missense_Mutation p.S201L 0.14 deleterious(0.03) possibly_damaging(0.619) TCGA-CV-5970-01 20 43836743 43836743 C G SEMG1 Missense_Mutation p.Q269E 0.11 tolerated(0.19) probably_damaging(0.988) TCGA-CV-5970-01 20 55777625 55777625 G A BMP7 Silent p.G222G 0.20 TCGA-CV-5970-01 21 41416162 41416162 C T DSCAM Silent p.A1742A 0.25 TCGA-CV-5970-01 21 42861456 42861456 G A TMPRSS2 Silent p.A138A 0.30 TCGA-CV-5970-01 21 46596022 46596022 G A ADARB1 Missense_Mutation p.E136K 0.16 deleterious(0) probably_damaging(0.989) TCGA-CV-5970-01 22 21087351 21087351 C G PI4KA Missense_Mutation p.R1399P 0.12 tolerated(0.1) benign(0.125) TCGA-CV-5970-01 22 22892745 22892745 A C PRAME Missense_Mutation p.L119R 0.14 deleterious(0) probably_damaging(0.995) TCGA-CV-5970-01 22 29139936 29139936 C T HSCB Silent p.V101V 0.13 TCGA-CV-5970-01 22 30818409 30818409 T G SEC14L2 3'UTR 0.36 TCGA-CV-5970-01 22 32586995 32586995 G A RFPL2 Missense_Mutation p.R301C 0.24 deleterious(0.02) possibly_damaging(0.594) TCGA-CV-5970-01 22 39826084 39826084 G A TAB1 Missense_Mutation p.D458N 0.10 tolerated(0.17) probably_damaging(0.989) TCGA-CV-5970-01 22 44079707 44079707 C A EFCAB6 Nonsense_Mutation p.E391* 0.18 TCGA-CV-5970-01 22 50660299 50660299 G A TUBGCP6 Missense_Mutation p.T830M 0.17 deleterious(0.04) benign(0.188) TCGA-CV-5970-01 2 143798151 143798151 G A KYNU Missense_Mutation p.R399Q 0.16 deleterious(0) probably_damaging(1) TCGA-CV-5970-01 2 152293769 152293769 C T RIF1 Missense_Mutation p.P463S 0.17 tolerated(0.06) benign(0.082) TCGA-CV-5970-01 2 160801458 160801458 G A PLA2R1 Missense_Mutation p.P1368L 0.11 deleterious(0.02) possibly_damaging(0.71) TCGA-CV-5970-01 2 166856246 166856246 A G SCN1A Missense_Mutation p.V1442A 0.12 deleterious(0) possibly_damaging(0.694) TCGA-CV-5970-01 2 170101321 170101321 G A LRP2 Silent p.H1104H 0.14 TCGA-CV-5970-01 2 171806117 171806117 C G GORASP2 Missense_Mutation p.I71M 0.12 deleterious(0) benign(0.199) TCGA-CV-5970-01 2 179403830 179403830 C G TTN Missense_Mutation p.W32944C 0.13 TCGA-CV-5970-01 2 179424911 179424911 A G TTN Missense_Mutation p.F28650L 0.20 TCGA-CV-5970-01 2 196891589 196891589 C G DNAH7 Missense_Mutation p.V188L 0.07 deleterious(0.05) benign(0.426) TCGA-CV-5970-01 2 231947609 231947609 G A PSMD1 Missense_Mutation p.G476S 0.13 deleterious(0) probably_damaging(0.995) TCGA-CV-5970-01 2 238785963 238785963 C A RAMP1 Silent p.A50A 0.21 TCGA-CV-5970-01 2 239003069 239003069 C T SCLY Silent p.F346F 0.05 TCGA-CV-5970-01 2 241066179 241066179 C T MYEOV2 Missense_Mutation p.R187Q 0.12 tolerated_low_confidence(0.5) unknown(0) TCGA-CV-5970-01 2 241987826 241987826 C T SNED1 Silent p.P456P 0.33 TCGA-CV-5970-01 2 25978930 25978930 G A ASXL2 Silent p.F331F 0.13 TCGA-CV-5970-01 2 27015013 27015013 C T CENPA Nonsense_Mutation p.Q39* 0.30 TCGA-CV-5970-01 2 27463149 27463149 G A CAD Missense_Mutation p.R1838H 0.12 tolerated(0.06) possibly_damaging(0.649) TCGA-CV-5970-01 2 27480162 27480162 C T SLC30A3 Missense_Mutation p.E213K 0.33 tolerated(0.34) benign(0.026) TCGA-CV-5970-01 2 28531155 28531155 A C BRE Intron 0.55 TCGA-CV-5970-01 2 37078179 37078179 C T STRN Missense_Mutation p.E684K 0.19 deleterious(0) possibly_damaging(0.83) TCGA-CV-5970-01 2 37235751 37235751 C T HEATR5B Intron 0.21 TCGA-CV-5970-01 2 46739793 46739793 C G ATP6V1E2 Missense_Mutation p.E20Q 0.14 deleterious(0) probably_damaging(0.965) TCGA-CV-5970-01 2 47656948 47656948 C T MSH2 Missense_Mutation p.R382C 0.19 deleterious(0) probably_damaging(0.956) TCGA-CV-5970-01 2 63280071 63280071 G A OTX1 5'UTR 0.11 TCGA-CV-5970-01 2 80530153 80530153 C G LRRTM1 Silent p.S264S 0.15 TCGA-CV-5970-01 2 80530267 80530267 G A LRRTM1 Silent p.F226F 0.16 TCGA-CV-5970-01 3 107938325 107938325 C T IFT57 Missense_Mutation p.E103K 0.07 tolerated(0.08) benign(0.088) TCGA-CV-5970-01 3 112300018 112300018 G C SLC35A5 Missense_Mutation p.D352H 0.13 tolerated(0.1) benign(0.261) TCGA-CV-5970-01 3 120424914 120424914 A C RABL3 Missense_Mutation p.L106V 0.19 deleterious(0) possibly_damaging(0.899) TCGA-CV-5970-01 3 122287708 122287708 G C DTX3L Missense_Mutation p.E258Q 0.07 tolerated(0.2) benign(0.056) TCGA-CV-5970-01 3 150377925 150377925 C T FAM194A Silent p.E582E 0.07 TCGA-CV-5970-01 3 150908657 150908657 G A MED12L Missense_Mutation p.R636Q 0.11 tolerated(0.58) probably_damaging(0.996) TCGA-CV-5970-01 3 151129190 151129190 C G MED12L Missense_Mutation p.S1977C 0.08 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-CV-5970-01 3 156175266 156175266 G A KCNAB1 Missense_Mutation p.A128T 0.10 deleterious(0) probably_damaging(0.998) TCGA-CV-5970-01 3 172474799 172474799 G A ECT2 Missense_Mutation p.M110I 0.40 tolerated(0.19) benign(0.002) TCGA-CV-5970-01 3 185198087 185198087 G C MAP3K13 Missense_Mutation p.D857H 0.10 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-CV-5970-01 3 186502610 186502610 C T EIF4A2 Intron 0.08 TCGA-CV-5970-01 3 188426313 188426313 C G LPP Intron 0.29 TCGA-CV-5970-01 3 195481222 195481222 C T MUC4 Missense_Mutation p.G5064R 0.36 benign(0.444) TCGA-CV-5970-01 3 53700551 53700551 G A CACNA1D Missense_Mutation p.V369M 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-CV-5970-01 3 8787388 8787388 C T CAV3 Silent p.F97F 0.21 TCGA-CV-5970-01 4 128627931 128627931 G A INTU Missense_Mutation p.R693K 0.17 tolerated(0.5) benign(0.007) TCGA-CV-5970-01 4 128628077 128628077 G A INTU Missense_Mutation p.E742K 0.16 tolerated(0.26) benign(0.09) TCGA-CV-5970-01 4 156281422 156281422 C A MAP9 Missense_Mutation p.K316N 0.15 tolerated(0.32) possibly_damaging(0.809) TCGA-CV-5970-01 4 1985365 1985365 G A NELFA Missense_Mutation p.P465S 0.33 tolerated(0.19) probably_damaging(0.932) TCGA-CV-5970-01 4 5961120 5961120 C T C4orf50 Silent p.P745P 0.13 TCGA-CV-5970-01 4 71114847 71114847 C G CSN3 Missense_Mutation p.P74A 0.12 tolerated(0.3) possibly_damaging(0.822) TCGA-CV-5970-01 4 79460452 79460452 G A FRAS1 Missense_Mutation p.R3768H 0.16 probably_damaging(0.999) TCGA-CV-5970-01 4 80327860 80327860 G A GK2 Missense_Mutation p.R499C 0.15 deleterious(0.02) possibly_damaging(0.893) TCGA-CV-5970-01 4 94377124 94377124 A C GRID2 Missense_Mutation p.Q619H 0.16 deleterious(0) probably_damaging(1) TCGA-CV-5970-01 5 10407240 10407240 G A MARCH6 Silent p.L493L 0.08 TCGA-CV-5970-01 5 140769023 140769023 C T PCDHGB4 Silent p.R524R 0.35 TCGA-CV-5970-01 5 140769043 140769043 A T PCDHGB4 Missense_Mutation p.Q531L 0.38 deleterious(0.02) possibly_damaging(0.6) TCGA-CV-5970-01 5 146971218 146971218 T G JAKMIP2 3'UTR 0.13 TCGA-CV-5970-01 5 149932896 149932896 C T NDST1 3'UTR 0.10 TCGA-CV-5970-01 5 159437549 159437549 C T TTC1 Missense_Mutation p.S5L 0.14 deleterious_low_confidence(0.01) benign(0.231) TCGA-CV-5970-01 5 33448677 33448677 C T TARS Missense_Mutation p.R57C 0.08 deleterious(0) probably_damaging(0.997) TCGA-CV-5970-01 5 36686248 36686248 G A SLC1A3 Silent p.L502L 0.09 TCGA-CV-5970-01 5 37108457 37108457 G A C5orf42 Missense_Mutation p.P3119S 0.06 deleterious(0.05) possibly_damaging(0.821) TCGA-CV-5970-01 5 66398375 66398375 C T MAST4 Missense_Mutation p.S361F 0.19 probably_damaging(0.979) TCGA-CV-5970-01 5 68660814 68660814 C T TAF9 Missense_Mutation p.D251N 0.11 deleterious(0.03) unknown(0) TCGA-CV-5970-01 5 78338269 78338269 G A DMGDH Nonsense_Mutation p.R344* 0.16 TCGA-CV-5970-01 5 9119159 9119159 T C SEMA5A Missense_Mutation p.T626A 0.18 tolerated(1) benign(0.052) TCGA-CV-5970-01 5 96314937 96314937 C G LNPEP Missense_Mutation p.L39V 0.12 deleterious(0.01) possibly_damaging(0.814) TCGA-CV-5970-01 6 117890830 117890830 C T GOPC Missense_Mutation p.G328R 0.23 tolerated(0.07) benign(0.344) TCGA-CV-5970-01 6 133783571 133783571 C A EYA4 Missense_Mutation p.T179K 0.14 deleterious(0) possibly_damaging(0.475) TCGA-CV-5970-01 6 33422811 33422811 C T ZBTB9 5'UTR 0.18 TCGA-CV-5970-01 6 34499521 34499521 C T PACSIN1 Silent p.Y394Y 0.17 TCGA-CV-5970-01 6 35260716 35260716 G A ZNF76 Silent p.S408S 0.50 TCGA-CV-5970-01 6 36714277 36714277 C T CPNE5 Missense_Mutation p.V366I 0.06 deleterious(0.02) probably_damaging(0.95) TCGA-CV-5970-01 6 87966228 87966228 G A ZNF292 Missense_Mutation p.G961S 0.27 tolerated_low_confidence(0.06) benign(0.008) TCGA-CV-5970-01 6 88126412 88126412 G A C6ORF165 Silent p.Q166Q 0.68 TCGA-CV-5970-01 6 90372597 90372597 C T MDN1 Missense_Mutation p.E4776K 0.20 benign(0.391) TCGA-CV-5970-01 7 107053006 107053006 C T COG5 Missense_Mutation p.A235T 0.25 deleterious(0.03) possibly_damaging(0.827) TCGA-CV-5970-01 7 120979112 120979112 G C WNT16 Missense_Mutation p.E271Q 0.19 tolerated(0.31) benign(0.071) TCGA-CV-5970-01 7 20826471 20826471 G A SP8 5'UTR 0.21 TCGA-CV-5970-01 7 25175685 25175685 G A C7orf31 Missense_Mutation p.S560L 0.16 deleterious(0.02) benign(0.062) TCGA-CV-5970-01 7 2752042 2752042 A C AMZ1 Missense_Mutation p.T343P 0.36 tolerated(0.13) possibly_damaging(0.657) TCGA-CV-5970-01 7 38259205 38259205 T G STARD3NL Missense_Mutation p.L198R 0.08 deleterious(0) possibly_damaging(0.696) TCGA-CV-5970-01 7 4272924 4272924 G A SDK1 Silent p.P1955P 0.16 TCGA-CV-5970-01 7 44179945 44179945 G A MYL7 Missense_Mutation p.T92M 0.11 deleterious(0.01) possibly_damaging(0.796) TCGA-CV-5970-01 7 56124052 56124052 G C CCT6A Missense_Mutation p.D187H 0.12 deleterious(0) probably_damaging(0.972) TCGA-CV-5970-01 7 87476268 87476268 G A SLC25A40 Silent p.F209F 0.15 TCGA-CV-5970-01 7 92136441 92136441 C T PEX1 Splice_Site p.X557_splice 0.15 TCGA-CV-5970-01 8 102381483 102381483 C T NACAP1 RNA 0.15 TCGA-CV-5970-01 8 145698053 145698053 C T KIFC2 Missense_Mutation p.R609C 0.13 deleterious(0.05) benign(0.018) TCGA-CV-5970-01 8 22019379 22019379 C T SFTPC Missense_Mutation p.P13L 0.19 deleterious(0) probably_damaging(1) TCGA-CV-5970-01 8 22266000 22266000 G A SLC39A14 Missense_Mutation p.A150T 0.17 tolerated(0.41) benign(0.001) TCGA-CV-5970-01 8 48798673 48798673 C T PRKDC Silent p.A1535A 0.41 TCGA-CV-5970-01 8 56436657 56436657 G C XKR4 Missense_Mutation p.E608D 0.20 tolerated(1) probably_damaging(0.97) TCGA-CV-5970-01 8 61765187 61765187 G A CHD7 Missense_Mutation p.E2009K 0.28 benign(0.374) TCGA-CV-5970-01 8 72987692 72987692 G A TRPA1 5'UTR 0.25 TCGA-CV-5970-01 9 124073041 124073041 G A GSN Missense_Mutation p.R195Q 0.13 deleterious(0.01) benign(0.27) TCGA-CV-5970-01 9 137779204 137779204 G A FCN2 Silent p.S295S 0.73 TCGA-CV-5970-01 9 138376726 138376726 G C PPP1R26 Missense_Mutation p.D124H 0.58 deleterious(0) probably_damaging(0.979) TCGA-CV-5970-01 X 135572633 135572633 C T BRS3 Missense_Mutation p.A259V 0.07 tolerated(0.48) benign(0.092) TCGA-CV-5970-01 X 147924495 147924495 G A AFF2 Silent p.S393S 0.63 TCGA-CV-5970-01 X 18283829 18283829 A G SCML2 Missense_Mutation p.L275S 0.29 tolerated(0.7) benign(0.009) TCGA-CV-5970-01 X 23928433 23928433 C T CXorf58 Missense_Mutation p.S5L 0.41 tolerated_low_confidence(0.43) benign(0.027) TCGA-CV-5970-01 X 9863269 9863269 G A SHROOM2 Missense_Mutation p.D441N 0.51 tolerated(0.82) benign(0.01) TCGA-CV-5971-01 10 102056008 102056008 G C PKD2L1 Silent p.L409L 0.10 TCGA-CV-5971-01 10 104359280 104359280 G A SUFU Missense_Mutation p.G334D 0.10 tolerated(0.45) benign(0.006) TCGA-CV-5971-01 10 12867572 12867572 C G CAMK1D Missense_Mutation p.Q308E 0.06 deleterious(0.01) benign(0.194) TCGA-CV-5971-01 11 111154935 111154935 G A C11orf53 Missense_Mutation p.A48T 0.04 tolerated(0.24) benign(0.062) TCGA-CV-5971-01 11 58723559 58723559 A G GLYATL1 3'UTR 0.12 TCGA-CV-5971-01 11 59420024 59420024 C T PATL1 Missense_Mutation p.E447K 0.07 deleterious(0.01) benign(0.349) TCGA-CV-5971-01 14 64746775 64746775 G A ESR2 Silent p.S153S 0.06 TCGA-CV-5971-01 19 46444042 46444042 G A NOVA2 Silent p.P186P 0.07 TCGA-CV-5971-01 1 152286334 152286334 C T FLG Missense_Mutation p.R343K 0.04 possibly_damaging(0.812) TCGA-CV-5971-01 1 196918742 196918742 C T CFHR2 Silent p.C72C 0.09 TCGA-CV-5971-01 1 209803116 209803116 C A LAMB3 Silent p.R366R 0.06 TCGA-CV-5971-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-5971-01 22 38483195 38483195 T C BAIAP2L2 Missense_Mutation p.M399V 0.60 tolerated(1) benign(0) TCGA-CV-5971-01 22 39387498 39387498 G A APOBEC3B Silent p.A295A 0.03 TCGA-CV-5971-01 2 219137576 219137576 G A PNKD Intron 0.12 TCGA-CV-5971-01 2 24046267 24046267 G A ATAD2B Silent p.S664S 0.10 TCGA-CV-5971-01 2 27804893 27804893 G A C2orf16 Silent p.L1818L 0.05 TCGA-CV-5971-01 2 90044193 90044193 G T IGKV2D-24 Silent p.P38P 0.06 TCGA-CV-5971-01 3 46244880 46244880 G A CCR1 Missense_Mutation p.R309W 0.10 deleterious(0) benign(0.091) TCGA-CV-5971-01 3 88199220 88199220 C G C3orf38 Silent p.L6L 0.11 TCGA-CV-5971-01 5 132232314 132232314 C T AFF4 Missense_Mutation p.E670K 0.07 tolerated(0.34) benign(0.116) TCGA-CV-5971-01 5 140723793 140723793 C T PCDHGA3 Missense_Mutation p.R65C 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-5971-01 5 71492944 71492944 G A MAP1B Silent p.S1254S 0.12 TCGA-CV-5971-01 7 141490605 141490605 C T TAS2R5 Silent p.F148F 0.13 TCGA-CV-5971-01 7 82581315 82581315 C G PCLO Missense_Mutation p.R2985T 0.04 unknown(0) TCGA-CV-5971-01 8 68423859 68423859 C G CPA6 Missense_Mutation p.E117Q 0.03 tolerated(0.06) probably_damaging(1) TCGA-CV-5971-01 9 138379027 138379027 C T PPP1R26 Missense_Mutation p.R891C 0.18 deleterious(0) probably_damaging(0.942) TCGA-CV-5971-01 9 139413085 139413085 G A NOTCH1 Missense_Mutation p.R353C 0.12 deleterious(0) probably_damaging(1) TCGA-CV-5971-01 9 71992331 71992331 G A FAM189A2 Missense_Mutation p.V100I 0.13 tolerated(0.12) probably_damaging(0.927) TCGA-CV-5971-01 X 106819559 106819559 G A FRMPD3 Silent p.L470L 0.08 TCGA-CV-5973-01 10 21804807 21804807 G A SKIDA1 Missense_Mutation p.P649S 0.07 tolerated(0.1) unknown(0) TCGA-CV-5973-01 10 294963 294963 G C ZMYND11 Missense_Mutation p.E541Q 0.12 tolerated(0.13) probably_damaging(0.995) TCGA-CV-5973-01 10 43316394 43316394 C T BMS1 Missense_Mutation p.P988L 0.54 deleterious(0) benign(0.444) TCGA-CV-5973-01 11 35641069 35641069 C T FJX1 Silent p.F295F 0.15 TCGA-CV-5973-01 11 59860935 59860935 C T MS4A2 Silent p.I147I 0.24 TCGA-CV-5973-01 11 64419615 64419615 C T NRXN2 Missense_Mutation p.E810K 0.12 tolerated(0.23) benign(0.001) TCGA-CV-5973-01 11 72412738 72412741 GTCT AGC ARAP1 Frame_Shift_Del p.K752Sfs*30 0.51 TCGA-CV-5973-01 12 49522572 49522572 G A TUBA1B Silent p.P175P 0.16 TCGA-CV-5973-01 12 57114712 57114712 C A NACA Missense_Mutation p.G201V 0.60 tolerated_low_confidence(0.16) benign(0.001) TCGA-CV-5973-01 12 69264160 69264160 C T CPM Missense_Mutation p.D151N 0.49 deleterious(0) probably_damaging(0.981) TCGA-CV-5973-01 12 6954826 6954826 A G GNB3 Missense_Mutation p.Q259R 0.36 tolerated(1) benign(0.023) TCGA-CV-5973-01 12 78400845 78400845 C A NAV3 Silent p.G509G 0.25 TCGA-CV-5973-01 14 103452874 103452875 - TCA CDC42BPB Nonsense_Mutation p.H213_I214ins* 0.60 TCGA-CV-5973-01 14 21502302 21502302 C T RNASE13 Missense_Mutation p.R49Q 0.64 tolerated(1) benign(0.001) TCGA-CV-5973-01 14 44975348 44975348 C T FSCB Silent p.A281A 0.30 TCGA-CV-5973-01 15 63054621 63054621 G A TLN2 Missense_Mutation p.D1644N 0.28 deleterious(0) benign(0.162) TCGA-CV-5973-01 15 72641550 72641550 T C HEXA Missense_Mutation p.T286A 0.49 tolerated(0.14) benign(0.008) TCGA-CV-5973-01 15 79382884 79382884 C T RASGRF1 5'UTR 0.19 TCGA-CV-5973-01 15 89744049 89744049 C G ABHD2 3'UTR 0.32 TCGA-CV-5973-01 16 55360387 55360387 C T IRX6 Missense_Mutation p.P62L 0.23 tolerated(0.05) probably_damaging(0.992) TCGA-CV-5973-01 16 58324903 58324903 C T PRSS54 Missense_Mutation p.E75K 0.19 tolerated(0.09) probably_damaging(0.955) TCGA-CV-5973-01 16 71025263 71025263 T C HYDIN Silent p.E1274E 0.42 TCGA-CV-5973-01 16 90038224 90038224 G A CENPBD1 Missense_Mutation p.A36V 0.32 tolerated(0.33) benign(0.024) TCGA-CV-5973-01 17 2598736 2598736 G A CLUH Missense_Mutation p.R787C 0.29 deleterious(0) probably_damaging(1) TCGA-CV-5973-01 17 56536136 56536136 C T HSF5 Silent p.K571K 0.36 TCGA-CV-5973-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.85 deleterious(0) probably_damaging(0.997) TCGA-CV-5973-01 18 59928798 59928798 C A KIAA1468 Missense_Mutation p.Q753K 0.22 tolerated(0.14) possibly_damaging(0.721) TCGA-CV-5973-01 19 19043825 19043825 G A HOMER3 Silent p.N147N 0.24 TCGA-CV-5973-01 19 22785506 22785506 C T AC011467.1 5'Flank 0.30 TCGA-CV-5973-01 19 22942355 22942355 C T ZNF99 Missense_Mutation p.S119N 0.14 tolerated(0.43) benign(0.009) TCGA-CV-5973-01 19 48578033 48578033 C T PLA2G4C Missense_Mutation p.E343K 0.23 tolerated(0.83) benign(0.005) TCGA-CV-5973-01 19 53453768 53453768 A T ZNF816 Silent p.T420T 0.56 TCGA-CV-5973-01 19 57132791 57132791 G T ZNF71 Nonsense_Mutation p.E46* 0.22 TCGA-CV-5973-01 19 7806539 7806539 G A CD209 3'UTR 0.27 TCGA-CV-5973-01 19 9579792 9579792 C A ZNF560 Missense_Mutation p.G201W 0.18 deleterious(0.02) probably_damaging(0.979) TCGA-CV-5973-01 1 150923168 150923168 A G SETDB1 Silent p.L605L 0.49 TCGA-CV-5973-01 1 179497484 179497484 A T AXDND1 Missense_Mutation p.K878M 0.24 tolerated(0.11) benign(0.043) TCGA-CV-5973-01 1 197111689 197111689 A T ASPM Missense_Mutation p.S565T 0.24 tolerated(0.23) benign(0.008) TCGA-CV-5973-01 1 207504538 207504538 G A CD55 Silent p.T250T 0.30 TCGA-CV-5973-01 1 248789870 248789870 G T OR2T11 Missense_Mutation p.A187E 0.18 tolerated(0.06) possibly_damaging(0.529) TCGA-CV-5973-01 1 45292686 45292686 G T PTCH2 Silent p.T861T 0.16 TCGA-CV-5973-01 1 54233608 54233608 T C NDC1 3'UTR 0.89 TCGA-CV-5973-01 20 21695343 21695343 C T PAX1 Missense_Mutation p.R503C 0.19 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-CV-5973-01 20 33438687 33438687 C G GGT7 Intron 0.56 TCGA-CV-5973-01 20 61143483 61143483 C T C20orf166 5'Flank 0.21 TCGA-CV-5973-01 20 62178692 62178692 G A SRMS Missense_Mutation p.P42L 0.22 tolerated(0.14) benign(0.002) TCGA-CV-5973-01 21 43327154 43327154 G A C2CD2 Missense_Mutation p.A422V 0.35 deleterious(0) possibly_damaging(0.884) TCGA-CV-5973-01 22 17288926 17288926 G T XKR3 Missense_Mutation p.T13K 0.29 tolerated(0.9) possibly_damaging(0.788) TCGA-CV-5973-01 22 30803469 30803469 C T SEC14L2 Silent p.Y100Y 0.33 TCGA-CV-5973-01 22 50720458 50720458 G A PLXNB2 Missense_Mutation p.S1057F 0.23 deleterious(0) probably_damaging(0.991) TCGA-CV-5973-01 2 109964267 109964267 C T SH3RF3 Silent p.H237H 0.21 TCGA-CV-5973-01 2 152112091 152112091 G A RBM43 Missense_Mutation p.T57I 0.40 deleterious(0) probably_damaging(0.964) TCGA-CV-5973-01 2 219529928 219529928 C T RNF25 Missense_Mutation p.V206M 0.21 deleterious(0.01) possibly_damaging(0.684) TCGA-CV-5973-01 2 220164844 220164844 G A PTPRN Silent p.P433P 0.38 TCGA-CV-5973-01 2 234750497 234750498 CA T HJURP Frame_Shift_Del p.C310Tfs*22 0.28 TCGA-CV-5973-01 2 50280513 50280513 C T NRXN1 Missense_Mutation p.A1382T 0.18 tolerated(0.61) benign(0.013) TCGA-CV-5973-01 2 89442550 89442550 C A IGKV3-20 Missense_Mutation p.W14C 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-CV-5973-01 2 99013496 99013496 G A CNGA3 Silent p.A621A 0.60 TCGA-CV-5973-01 3 121207697 121207697 G A POLQ Nonsense_Mutation p.Q1361* 0.13 TCGA-CV-5973-01 3 135722254 135722254 A T PPP2R3A Silent p.S638S 0.22 TCGA-CV-5973-01 3 47912432 47912432 C T MAP4 Silent p.S910S 0.40 TCGA-CV-5973-01 3 53842756 53842756 C T CACNA1D Missense_Mutation p.P1964S 0.29 tolerated_low_confidence(0.64) benign(0.403) TCGA-CV-5973-01 4 184241208 184241209 AC - CLDN22 Frame_Shift_Del p.V55Hfs*13 0.23 TCGA-CV-5973-01 5 14378176 14378176 G A TRIO Missense_Mutation p.M1129I 0.29 benign(0.007) TCGA-CV-5973-01 6 110777895 110777895 C T SLC22A16 Missense_Mutation p.D127N 0.41 tolerated(0.18) possibly_damaging(0.479) TCGA-CV-5973-01 6 31322969 31322970 CA - HLA-B Frame_Shift_Del p.V309Gfs*24 0.33 TCGA-CV-5973-01 6 35479474 35479474 G A TULP1 Silent p.R100R 0.36 TCGA-CV-5973-01 6 36485513 36485513 G C STK38 Missense_Mutation p.I165M 0.27 deleterious(0) probably_damaging(0.926) TCGA-CV-5973-01 7 13935629 13935629 T C ETV1 Silent p.P432P 0.37 TCGA-CV-5973-01 7 150772826 150772826 G A SLC4A2 Silent p.P1145P 0.23 TCGA-CV-5973-01 7 21784487 21784487 G T DNAH11 Splice_Site p.X2780_splice 0.17 TCGA-CV-5973-01 8 22438929 22438929 G A PDLIM2 Missense_Mutation p.R294Q 0.40 tolerated(0.31) possibly_damaging(0.759) TCGA-CV-5973-01 8 48852134 48852134 G A PRKDC Missense_Mutation p.R364C 0.24 probably_damaging(1) TCGA-CV-5973-01 9 131678563 131678563 C T LRRC8A Silent p.S782S 0.29 TCGA-CV-5973-01 9 139393696 139393696 G A NOTCH1 Nonsense_Mutation p.R1984* 0.49 TCGA-CV-5973-01 9 20944734 20944734 C T FOCAD Silent p.H1172H 0.34 TCGA-CV-5973-01 9 21974755 21974758 CCGA - CDKN2A Frame_Shift_Del p.R24* 0.33 TCGA-CV-5973-01 9 79635500 79635500 C T FOXB2 Silent p.V310V 0.40 TCGA-CV-5973-01 9 84531710 84531710 C T SPATA31D5P RNA 0.29 TCGA-CV-5973-01 X 71350464 71350464 T G RGAG4 Missense_Mutation p.R309S 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-CV-5976-01 11 118243810 118243810 A C UBE4A Missense_Mutation p.D251A 0.29 tolerated(0.5) benign(0.012) TCGA-CV-5976-01 11 45246383 45246383 C T PRDM11 Missense_Mutation p.S453L 0.31 deleterious_low_confidence(0) benign(0.145) TCGA-CV-5976-01 11 55135388 55135388 T A OR4A15 Missense_Mutation p.F10Y 0.13 benign(0) TCGA-CV-5976-01 11 58478154 58478154 G A GLYAT Missense_Mutation p.L133F 0.27 deleterious(0) probably_damaging(0.99) TCGA-CV-5976-01 11 65123651 65123651 G A TIGD3 Silent p.L124L 0.17 TCGA-CV-5976-01 11 65393198 65393198 G A PCNXL3 Missense_Mutation p.V1071I 0.33 deleterious(0) benign(0.27) TCGA-CV-5976-01 11 65735028 65735028 G A SART1 Missense_Mutation p.R467Q 0.31 tolerated(0.1) probably_damaging(0.988) TCGA-CV-5976-01 11 75298616 75298616 G A MAP6 Missense_Mutation p.P644S 0.25 tolerated_low_confidence(0.07) benign(0.03) TCGA-CV-5976-01 12 129559527 129559527 G T TMEM132D Missense_Mutation p.F731L 0.25 tolerated(0.05) probably_damaging(0.954) TCGA-CV-5976-01 12 130184386 130184386 T C TMEM132D Missense_Mutation p.R313G 0.30 tolerated(0.25) benign(0.003) TCGA-CV-5976-01 12 45170851 45170851 C G NELL2 Missense_Mutation p.D296H 0.19 tolerated(0.24) probably_damaging(0.94) TCGA-CV-5976-01 12 46244616 46244616 C T ARID2 Nonsense_Mutation p.Q904* 0.19 TCGA-CV-5976-01 12 56720656 56720656 A T PAN2 Missense_Mutation p.F336Y 0.30 deleterious(0) possibly_damaging(0.801) TCGA-CV-5976-01 13 31891811 31891811 G A B3GALTL Silent p.T391T 0.22 TCGA-CV-5976-01 14 21771560 21771560 A G RPGRIP1 Missense_Mutation p.M220V 0.27 tolerated(0.57) benign(0.001) TCGA-CV-5976-01 14 44974982 44974982 G A FSCB Silent p.G403G 0.23 TCGA-CV-5976-01 14 50792426 50792426 A G ATP5S Silent p.K211K 0.31 TCGA-CV-5976-01 14 53245024 53245024 G A GNPNAT1 3'UTR 0.18 TCGA-CV-5976-01 14 70490018 70490018 G A SMOC1 Missense_Mutation p.R382Q 0.24 deleterious(0) benign(0.324) TCGA-CV-5976-01 15 42003295 42003297 CAT - MGA In_Frame_Del p.I946del 0.35 TCGA-CV-5976-01 15 42110413 42110413 A T MAPKBP1 Missense_Mutation p.I674F 0.19 deleterious(0.03) benign(0.058) TCGA-CV-5976-01 15 59225787 59225787 G A SLTM 5'UTR 0.21 TCGA-CV-5976-01 16 2983757 2983757 C T FLYWCH1 Silent p.F429F 0.41 TCGA-CV-5976-01 17 36485397 36485397 C A GPR179 Missense_Mutation p.S1352I 0.18 deleterious(0.01) benign(0.361) TCGA-CV-5976-01 17 42855578 42855578 C T ADAM11 Silent p.A748A 0.19 TCGA-CV-5976-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.39 deleterious(0) probably_damaging(1) TCGA-CV-5976-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.25 deleterious(0.04) possibly_damaging(0.898) TCGA-CV-5976-01 18 50942511 50942511 A C DCC Missense_Mutation p.M1050L 0.48 tolerated(0.05) benign(0.269) TCGA-CV-5976-01 18 67406313 67406313 A T DOK6 Missense_Mutation p.M238L 0.48 tolerated(1) benign(0.001) TCGA-CV-5976-01 19 18649084 18649084 G A FKBP8 Silent p.F238F 0.06 TCGA-CV-5976-01 19 39898771 39898771 G A ZFP36 Missense_Mutation p.R144H 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-5976-01 19 47856424 47856424 A G DHX34 Missense_Mutation p.E46G 0.30 tolerated(0.06) benign(0) TCGA-CV-5976-01 19 55605735 55605735 C T PPP1R12C Missense_Mutation p.R554H 0.21 deleterious(0) probably_damaging(0.994) TCGA-CV-5976-01 19 5699115 5699115 G A LONP1 Silent p.I536I 0.19 TCGA-CV-5976-01 1 100598746 100598746 C A TRMT13 Missense_Mutation p.P8T 0.18 tolerated_low_confidence(0.12) benign(0.001) TCGA-CV-5976-01 1 110022065 110022065 G C SYPL2 Silent p.P238P 0.29 TCGA-CV-5976-01 1 113240920 113240920 C T MOV10 Silent p.I776I 0.17 TCGA-CV-5976-01 1 14106924 14106924 A G PRDM2 Silent p.V878V 0.26 TCGA-CV-5976-01 1 145299900 145299900 C G NBPF10 Missense_Mutation p.Q317E 0.15 benign(0.01) TCGA-CV-5976-01 1 145608112 145608113 - A POLR3C Frame_Shift_Ins p.L195Ffs*6 0.25 TCGA-CV-5976-01 1 152192700 152192700 C G HRNR Missense_Mutation p.E469Q 0.27 unknown(0) TCGA-CV-5976-01 1 152192821 152192821 C G HRNR Missense_Mutation p.Q428H 0.30 unknown(0) TCGA-CV-5976-01 1 161697075 161697075 C A FCRLB Missense_Mutation p.P302T 0.20 deleterious(0.05) benign(0.322) TCGA-CV-5976-01 1 161697178 161697178 C T FCRLB Missense_Mutation p.S336F 0.31 tolerated(0.08) benign(0.006) TCGA-CV-5976-01 1 168148294 168148294 C A TIPRL 5'UTR 0.32 TCGA-CV-5976-01 1 177249883 177249883 G A BRINP2 Missense_Mutation p.R524H 0.39 deleterious(0) probably_damaging(0.996) TCGA-CV-5976-01 1 181701838 181701838 C T CACNA1E Silent p.T872T 0.40 TCGA-CV-5976-01 1 207741172 207741174 TCT CC CR1 Frame_Shift_Del p.I1319Tfs*28 0.24 TCGA-CV-5976-01 1 26448944 26448944 A G PDIK1L Missense_Mutation p.N301S 0.31 tolerated(1) benign(0.015) TCGA-CV-5976-01 1 27682581 27682581 G C MAP3K6 Nonsense_Mutation p.S1216* 0.25 TCGA-CV-5976-01 1 38227606 38227606 G A EPHA10 Silent p.F107F 0.29 TCGA-CV-5976-01 1 47284539 47284539 C T CYP4B1 3'UTR 0.28 TCGA-CV-5976-01 1 57173466 57173466 A G PRKAA2 3'UTR 0.23 TCGA-CV-5976-01 1 74671407 74671407 A G FPGT Missense_Mutation p.Y559C 0.27 deleterious(0.03) possibly_damaging(0.662) TCGA-CV-5976-01 20 47991218 47991218 G A KCNB1 Silent p.R293R 0.36 TCGA-CV-5976-01 21 11039138 11039138 G A BAGE2 RNA 0.06 TCGA-CV-5976-01 21 45537698 45537698 C G PWP2 Intron 0.20 TCGA-CV-5976-01 22 23063589 23063589 A C IGLV3-19 Missense_Mutation p.E99A 0.24 deleterious(0.01) possibly_damaging(0.881) TCGA-CV-5976-01 22 30127110 30127110 G A ZMAT5 3'UTR 0.19 TCGA-CV-5976-01 2 136546023 136546023 G A LCT Silent p.Y1885Y 0.18 TCGA-CV-5976-01 2 141946119 141946119 C T LRP1B Missense_Mutation p.R295Q 0.33 possibly_damaging(0.553) TCGA-CV-5976-01 2 216298182 216298182 C T FN1 Missense_Mutation p.E94K 0.24 tolerated(0.06) probably_damaging(0.998) TCGA-CV-5976-01 2 218669168 218669168 G C TNS1 3'UTR 0.15 TCGA-CV-5976-01 2 220500408 220500408 G A SLC4A3 Silent p.E689E 0.33 TCGA-CV-5976-01 2 26101116 26101116 G T ASXL2 5'UTR 0.21 TCGA-CV-5976-01 2 28761181 28761181 C T PLB1 Intron 0.11 TCGA-CV-5976-01 2 45233324 45233324 C T SIX2 Silent p.V287V 0.17 TCGA-CV-5976-01 2 62934294 62934294 C A EHBP1 5'UTR 0.23 TCGA-CV-5976-01 2 68729908 68729908 C T APLF Missense_Mutation p.L72F 0.28 deleterious(0.05) benign(0.055) TCGA-CV-5976-01 3 52553341 52553341 G A STAB1 Missense_Mutation p.G1699D 0.46 deleterious(0) probably_damaging(1) TCGA-CV-5976-01 3 57569702 57569702 T C ARF4 Missense_Mutation p.I61V 0.44 tolerated_low_confidence(0.14) benign(0.147) TCGA-CV-5976-01 4 175897355 175897355 G T ADAM29 Missense_Mutation p.V227F 0.35 tolerated(0.73) benign(0.06) TCGA-CV-5976-01 4 187518254 187518254 C T FAT1 Missense_Mutation p.G4147D 0.32 probably_damaging(0.956) TCGA-CV-5976-01 4 46930431 46930431 G A GABRA4 Silent p.T492T 0.16 TCGA-CV-5976-01 4 62598970 62598970 A T LPHN3 Missense_Mutation p.E298V 0.17 deleterious(0) probably_damaging(1) TCGA-CV-5976-01 4 70071211 70071211 C G UGT2B11 Missense_Mutation p.Q359H 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-5976-01 4 85566477 85566477 A T CDS1 Missense_Mutation p.R419W 0.49 deleterious(0) probably_damaging(0.983) TCGA-CV-5976-01 5 14716914 14716914 C T ANKH Missense_Mutation p.V348M 0.23 deleterious(0.01) benign(0.093) TCGA-CV-5976-01 5 74655134 74655134 A G HMGCR Missense_Mutation p.Q766R 0.24 deleterious(0) probably_damaging(0.986) TCGA-CV-5976-01 6 10874807 10874807 G A GCM2 Silent p.V314V 0.28 TCGA-CV-5976-01 6 27799149 27799149 C G HIST1H4K Missense_Mutation p.E53Q 0.27 deleterious(0.02) possibly_damaging(0.451) TCGA-CV-5976-01 6 29910349 29910349 C T HLA-A Nonsense_Mutation p.R7* 0.25 TCGA-CV-5976-01 6 31778484 31778484 G A HSPA1L Silent p.I422I 0.24 TCGA-CV-5976-01 6 43638533 43638533 G T RSPH9 Nonsense_Mutation p.E244* 0.13 TCGA-CV-5976-01 6 4935984 4935984 G A CDYL Silent p.E309E 0.26 TCGA-CV-5976-01 7 106508605 106508605 C T PIK3CG Missense_Mutation p.P200L 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-CV-5976-01 7 127223255 127223255 C T GCC1 Missense_Mutation p.E381K 0.25 deleterious(0) probably_damaging(0.91) TCGA-CV-5976-01 7 13935510 13935510 T C ETV1 Missense_Mutation p.N472S 0.21 tolerated(1) benign(0.004) TCGA-CV-5976-01 7 15599868 15599868 A T AGMO Missense_Mutation p.L52Q 0.28 deleterious(0) benign(0.372) TCGA-CV-5976-01 7 37264524 37264524 G A ELMO1 Nonsense_Mutation p.Q221* 0.32 TCGA-CV-5976-01 7 37988572 37988572 G A EPDR1 Missense_Mutation p.E134K 0.36 deleterious(0) possibly_damaging(0.865) TCGA-CV-5976-01 7 96651405 96651405 C T DLX5 Intron 0.19 TCGA-CV-5976-01 8 144944533 144944533 C T EPPK1 Silent p.L963L 0.20 TCGA-CV-5976-01 8 144993862 144993862 C T PLEC Missense_Mutation p.R3513H 0.31 probably_damaging(0.98) TCGA-CV-5976-01 8 53573780 53573780 G A RB1CC1 Missense_Mutation p.R474C 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-5976-01 9 130207597 130207597 C A ZNF79 3'UTR 0.23 TCGA-CV-5976-01 9 21971108 21971108 C T CDKN2A Missense_Mutation p.D84N 0.36 deleterious(0) probably_damaging(1) TCGA-CV-5976-01 9 99522150 99522150 G C ZNF510 Nonsense_Mutation p.S321* 0.29 TCGA-CV-5976-01 X 35993984 35993984 C A CXorf22 Silent p.P889P 0.37 TCGA-CV-5977-01 10 11308601 11308601 G A CELF2 Silent p.Q193Q 0.33 TCGA-CV-5977-01 10 123274743 123274743 A G FGFR2 Missense_Mutation p.V393A 0.44 tolerated(0.13) possibly_damaging(0.686) TCGA-CV-5977-01 10 16962010 16962010 C T CUBN Missense_Mutation p.R2258H 0.24 tolerated(0.52) possibly_damaging(0.806) TCGA-CV-5977-01 10 38299706 38299706 A T ZNF33A 5'UTR 0.16 TCGA-CV-5977-01 10 48370659 48370659 C T ZNF488 Missense_Mutation p.R43W 0.16 tolerated(0.18) benign(0.446) TCGA-CV-5977-01 10 55582486 55582486 G T PCDH15 Missense_Mutation p.P1669H 0.49 deleterious_low_confidence(0.01) benign(0.002) TCGA-CV-5977-01 10 62632017 62632017 C T RHOBTB1 Missense_Mutation p.C616Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-5977-01 10 7205769 7205769 C G SFMBT2 Missense_Mutation p.R883T 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-5977-01 10 96580294 96580294 G T CYP2C19 Missense_Mutation p.L287F 0.16 deleterious(0.01) possibly_damaging(0.594) TCGA-CV-5977-01 11 55371152 55371152 T - OR4C11 Frame_Shift_Del p.K233Rfs*10 0.51 TCGA-CV-5977-01 11 6648366 6648366 A G DCHS1 Silent p.R1968R 0.29 TCGA-CV-5977-01 11 68566776 68566776 C T CPT1A Silent p.R201R 0.39 TCGA-CV-5977-01 12 21692267 21692267 G A GYS2 Silent p.Y605Y 0.33 TCGA-CV-5977-01 12 7046142 7046142 C A ATN1 Missense_Mutation p.S571Y 0.15 possibly_damaging(0.722) TCGA-CV-5977-01 13 46543408 46543408 C T ZC3H13 Missense_Mutation p.G1091S 0.19 unknown(0) TCGA-CV-5977-01 13 48528631 48528631 G C SUCLA2 Missense_Mutation p.I288M 0.23 deleterious(0) possibly_damaging(0.785) TCGA-CV-5977-01 13 84453707 84453707 G A SLITRK1 Nonsense_Mutation p.R646* 0.42 TCGA-CV-5977-01 14 101531829 101531829 T C MIR412 RNA 0.45 TCGA-CV-5977-01 14 21058491 21058491 A T RNASE12 Missense_Mutation p.L131H 0.42 deleterious(0) probably_damaging(0.93) TCGA-CV-5977-01 15 35084363 35084363 C T ACTC1 Missense_Mutation p.D246N 0.15 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-CV-5977-01 15 74630346 74630346 G A CYP11A1 Silent p.F511F 0.25 TCGA-CV-5977-01 16 10273897 10273897 G A GRIN2A Silent p.I124I 0.29 TCGA-CV-5977-01 16 1747824 1747824 C G HN1L Missense_Mutation p.F116L 0.24 tolerated(1) benign(0.001) TCGA-CV-5977-01 16 20856517 20856517 C T AC004381.6 Missense_Mutation p.P693L 0.24 tolerated(0.55) benign(0.001) TCGA-CV-5977-01 16 5123195 5123195 C G ALG1 Missense_Mutation p.Q110E 0.19 deleterious(0) possibly_damaging(0.589) TCGA-CV-5977-01 16 66950205 66950205 C T CDH16 Missense_Mutation p.R86Q 0.36 deleterious(0.01) possibly_damaging(0.833) TCGA-CV-5977-01 16 75513510 75513510 C T CHST6 Missense_Mutation p.A73T 0.35 deleterious(0) probably_damaging(0.946) TCGA-CV-5977-01 17 27287979 27287979 C G SEZ6 Missense_Mutation p.G418A 0.15 deleterious(0) probably_damaging(1) TCGA-CV-5977-01 17 34079822 34079822 C A GAS2L2 Silent p.P16P 0.24 TCGA-CV-5977-01 17 3572587 3572587 C G EMC6 Silent p.L49L 0.23 TCGA-CV-5977-01 17 42148497 42148497 T C G6PC3 Missense_Mutation p.I55T 0.29 deleterious(0.04) benign(0.226) TCGA-CV-5977-01 17 42397759 42397759 G A SLC25A39 Missense_Mutation p.R283C 0.58 deleterious(0.01) benign(0.249) TCGA-CV-5977-01 17 7319416 7319416 G A NLGN2 Missense_Mutation p.A542T 0.31 deleterious(0) probably_damaging(0.996) TCGA-CV-5977-01 17 7576853 7576853 C T TP53 Silent p.Q331Q 0.28 TCGA-CV-5977-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.50 deleterious(0) probably_damaging(0.982) TCGA-CV-5977-01 17 79409052 79409052 G A RP11-1055B8.7 Missense_Mutation p.R226K 0.21 benign(0.001) TCGA-CV-5977-01 18 14478912 14478912 G A CXADRP3 RNA 0.46 TCGA-CV-5977-01 18 7044739 7044739 A G LAMA1 Missense_Mutation p.S320P 0.14 deleterious(0.02) possibly_damaging(0.756) TCGA-CV-5977-01 19 11598501 11598501 G T ZNF653 Silent p.T259T 0.35 TCGA-CV-5977-01 19 14499294 14499294 G A CD97 Missense_Mutation p.E19K 0.35 tolerated(0.64) benign(0.065) TCGA-CV-5977-01 19 21493405 21493405 C A ZNF708 Missense_Mutation p.A10S 0.37 deleterious(0.03) probably_damaging(0.938) TCGA-CV-5977-01 19 3613305 3613305 C T CACTIN Missense_Mutation p.A513T 0.42 tolerated(0.57) benign(0.007) TCGA-CV-5977-01 19 39660174 39660174 C T PAK4 Intron 0.24 TCGA-CV-5977-01 19 4679886 4679886 G A DPP9 Silent p.V849V 0.19 TCGA-CV-5977-01 19 51363301 51363301 C T KLK3 Missense_Mutation p.A235V 0.38 deleterious(0.04) benign(0.033) TCGA-CV-5977-01 19 52941603 52941603 C A ZNF534 Missense_Mutation p.P310H 0.15 deleterious(0) probably_damaging(0.998) TCGA-CV-5977-01 19 758639 758639 C T MISP Missense_Mutation p.R565W 0.36 deleterious(0) probably_damaging(1) TCGA-CV-5977-01 19 8807822 8807822 G A ACTL9 Silent p.I410I 0.36 TCGA-CV-5977-01 19 9296557 9296557 A G OR7D2 Missense_Mutation p.M34V 0.09 deleterious_low_confidence(0.02) benign(0.081) TCGA-CV-5977-01 1 1164118 1164118 G A SDF4 Missense_Mutation p.A19V 0.29 tolerated_low_confidence(0.32) benign(0.004) TCGA-CV-5977-01 1 151260525 151260525 G A ZNF687 Silent p.K586K 0.22 TCGA-CV-5977-01 1 159175312 159175312 C T DARC Missense_Mutation p.S30F 0.15 tolerated(0.69) benign(0) TCGA-CV-5977-01 1 179077623 179077632 GAGTGGTTGG - ABL2 Frame_Shift_Del p.P924Tfs*13 0.20 TCGA-CV-5977-01 1 22902848 22902848 G A EPHA8 Missense_Mutation p.E100K 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-5977-01 1 247597516 247597516 C T NLRP3 Silent p.F813F 0.64 TCGA-CV-5977-01 1 32118423 32118423 C T COL16A1 Missense_Mutation p.M1548I 0.27 benign(0.242) TCGA-CV-5977-01 1 75072310 75072310 G A C1orf173 Silent p.D488D 0.58 TCGA-CV-5977-01 1 90398915 90398915 C T LRRC8D Silent p.N96N 0.76 TCGA-CV-5977-01 1 94953518 94953518 G A ABCD3 Missense_Mutation p.R379H 0.18 deleterious(0) probably_damaging(0.97) TCGA-CV-5977-01 20 644433 644433 C T SCRT2 Missense_Mutation p.R269H 0.50 deleterious(0.03) benign(0.066) TCGA-CV-5977-01 22 40080513 40080513 C T CACNA1I Intron 0.53 TCGA-CV-5977-01 22 44004470 44004470 T C EFCAB6 Missense_Mutation p.E858G 0.24 deleterious(0) probably_damaging(1) TCGA-CV-5977-01 2 152539188 152539188 G A NEB Silent p.D977D 0.57 TCGA-CV-5977-01 2 179642181 179642181 G T TTN Silent p.G1537G 0.27 TCGA-CV-5977-01 2 179647599 179647599 G A TTN Nonsense_Mutation p.R1012* 0.42 TCGA-CV-5977-01 2 239180022 239180022 C T PER2 Missense_Mutation p.D235N 0.23 deleterious(0) probably_damaging(0.998) TCGA-CV-5977-01 2 38301497 38301497 G A CYP1B1 Silent p.L345L 0.27 TCGA-CV-5977-01 2 73447180 73447180 C T SMYD5 Silent p.A69A 0.43 TCGA-CV-5977-01 2 74650048 74650048 C A WDR54 Silent p.R92R 0.24 TCGA-CV-5977-01 2 74902408 74902408 C T SEMA4F Silent p.G423G 0.18 TCGA-CV-5977-01 3 142841109 142841109 G A CHST2 Missense_Mutation p.R484Q 0.08 deleterious(0) probably_damaging(0.992) TCGA-CV-5977-01 3 180322057 180322057 G A TTC14 Silent p.G177G 0.53 TCGA-CV-5977-01 3 194947478 194947478 G A XXYLT1 Silent p.I204I 0.10 TCGA-CV-5977-01 3 196199094 196199094 C G RNF168 Missense_Mutation p.E438Q 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-CV-5977-01 3 52819104 52819104 T C ITIH1 Silent p.D484D 0.33 TCGA-CV-5977-01 3 9489625 9489625 A G SETD5 Missense_Mutation p.T680A 0.17 tolerated(0.81) benign(0) TCGA-CV-5977-01 4 120213723 120213723 C T USP53 Missense_Mutation p.S860F 0.30 deleterious_low_confidence(0) benign(0.419) TCGA-CV-5977-01 4 126240974 126240974 G C FAT4 Missense_Mutation p.R1136S 0.18 possibly_damaging(0.752) TCGA-CV-5977-01 4 154542878 154542878 G C KIAA0922 Missense_Mutation p.E1246Q 0.21 deleterious(0) probably_damaging(0.93) TCGA-CV-5977-01 4 44688655 44688655 C T GUF1 Missense_Mutation p.S288F 0.14 tolerated(0.22) probably_damaging(1) TCGA-CV-5977-01 5 131398259 131398259 C T IL3 Missense_Mutation p.T112M 0.16 tolerated(0.1) possibly_damaging(0.856) TCGA-CV-5977-01 5 140559041 140559041 G A PCDHB8 Missense_Mutation p.A476T 0.13 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-CV-5977-01 5 140755613 140755613 T G PCDHGA6 Missense_Mutation p.S655A 0.22 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-CV-5977-01 5 140764535 140764535 C T PCDHGA7 Missense_Mutation p.T690M 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.792) TCGA-CV-5977-01 5 167896016 167896016 C T WWC1 Silent p.D1118D 0.21 TCGA-CV-5977-01 5 178416069 178416069 C T GRM6 Silent p.A407A 0.22 TCGA-CV-5977-01 5 81549160 81549160 G C ATG10 Silent p.L193L 0.19 TCGA-CV-5977-01 6 34101144 34101144 G A GRM4 Missense_Mutation p.R44C 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-CV-5977-01 6 46846093 46846093 C T GPR116 Silent p.K362K 0.20 TCGA-CV-5977-01 6 55113499 55113499 C G HCRTR2 Missense_Mutation p.L96V 0.44 deleterious(0) probably_damaging(1) TCGA-CV-5977-01 7 136938277 136938277 C G PTN Missense_Mutation p.E75Q 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.492) TCGA-CV-5977-01 7 38402614 38402614 C A TRGV2 Missense_Mutation p.D69Y 0.22 deleterious(0.04) benign(0.126) TCGA-CV-5977-01 7 4825265 4825265 C T AP5Z1 Missense_Mutation p.P361L 0.62 tolerated(0.72) benign(0.004) TCGA-CV-5977-01 7 5540952 5540952 C T FBXL18 Silent p.P316P 0.44 TCGA-CV-5977-01 7 74212483 74212483 C T GTF2IRD2 Silent p.V456V 0.38 TCGA-CV-5977-01 7 82579315 82579315 G A PCLO Missense_Mutation p.P3530L 0.36 unknown(0) TCGA-CV-5977-01 7 8791411 8791411 G A NXPH1 3'UTR 0.50 TCGA-CV-5977-01 7 94056511 94056511 T C COL1A2 Silent p.G1057G 0.33 TCGA-CV-5977-01 7 99364768 99364768 C T CYP3A4 Missense_Mutation p.E262K 0.31 tolerated(1) benign(0) TCGA-CV-5977-01 8 131880186 131880186 G C ADCY8 Missense_Mutation p.Q706E 0.24 deleterious(0.02) benign(0.23) TCGA-CV-5977-01 8 133978854 133978854 C A TG Silent p.V1866V 0.32 TCGA-CV-5977-01 8 17611496 17611496 G T MTUS1 Silent p.A607A 0.77 TCGA-CV-5977-01 8 3611465 3611465 G A CSMD1 Silent p.N306N 0.69 TCGA-CV-5977-01 9 115760008 115760008 C T ZNF883 RNA 0.42 TCGA-CV-5977-01 9 116267802 116267802 C T RGS3 Silent p.S326S 0.46 TCGA-CV-5977-01 9 124064328 124064328 C A GSN Missense_Mutation p.L78M 0.20 tolerated(0.41) probably_damaging(1) TCGA-CV-5977-01 9 136307841 136307841 C T ADAMTS13 Silent p.C737C 0.54 TCGA-CV-5977-01 9 138714065 138714065 C G CAMSAP1 Missense_Mutation p.M814I 0.15 deleterious(0) probably_damaging(0.968) TCGA-CV-5977-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.93 TCGA-CV-5977-01 9 84608276 84608276 G A SPATA31D1 Missense_Mutation p.R964H 0.34 tolerated(0.55) benign(0.024) TCGA-CV-5977-01 X 128887212 128887212 C G XPNPEP2 Silent p.L365L 0.38 TCGA-CV-5977-01 X 1407749 1407749 C T CSF2RA Silent p.D147D 0.18 TCGA-CV-5978-01 10 100904156 100904156 T A HPSE2 Missense_Mutation p.D150V 0.16 deleterious(0.02) possibly_damaging(0.632) TCGA-CV-5978-01 10 102239717 102239717 G C WNT8B Missense_Mutation p.W63C 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-5978-01 10 128936006 128936006 C T FAM196A 3'UTR 0.50 TCGA-CV-5978-01 10 27703080 27703080 G A PTCHD3 Nonsense_Mutation p.Q34* 0.14 TCGA-CV-5978-01 10 51748544 51748544 G T AGAP6 Silent p.S23S 0.41 TCGA-CV-5978-01 10 87482808 87482808 G T GRID1 Missense_Mutation p.A650D 0.21 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 11 119059095 119059095 G T PDZD3 Silent p.L298L 0.19 TCGA-CV-5978-01 11 123753941 123753941 T C TMEM225 Silent p.P194P 0.24 TCGA-CV-5978-01 11 18159486 18159486 G C MRGPRX3 Missense_Mutation p.W246S 0.09 tolerated(0.57) benign(0) TCGA-CV-5978-01 11 284380 284380 G C NLRP6 Missense_Mutation p.Q784H 0.41 tolerated(0.14) benign(0.018) TCGA-CV-5978-01 11 43702294 43702294 C T HSD17B12 5'UTR 0.23 TCGA-CV-5978-01 11 55761981 55761981 C T OR5F1 Missense_Mutation p.G41R 0.26 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 11 56510760 56510760 G A OR9G4 Silent p.A176A 0.28 TCGA-CV-5978-01 11 58715400 58715400 C A GLYATL1 Missense_Mutation p.P81T 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-CV-5978-01 11 65273602 65273602 G A MALAT1 RNA 0.32 TCGA-CV-5978-01 11 68777336 68777336 C T MRGPRF Missense_Mutation p.G12S 0.06 tolerated_low_confidence(0.73) benign(0) TCGA-CV-5978-01 11 7960207 7960207 C T OR10A3 Silent p.P287P 0.30 TCGA-CV-5978-01 11 83770475 83770475 G A DLG2 Missense_Mutation p.H268Y 0.13 deleterious(0) probably_damaging(0.968) TCGA-CV-5978-01 11 89135493 89135493 C A NOX4 Splice_Site p.X282_splice 0.18 TCGA-CV-5978-01 11 89896824 89896824 C A NAALAD2 Intron 0.30 TCGA-CV-5978-01 12 104171585 104171585 A T NT5DC3 3'UTR 0.20 TCGA-CV-5978-01 12 105515902 105515902 G A KIAA1033 Silent p.L224L 0.09 TCGA-CV-5978-01 12 108959132 108959132 T C ISCU Silent p.A88A 0.09 TCGA-CV-5978-01 12 11034867 11034867 T A PRH1 Silent p.P156P 0.16 TCGA-CV-5978-01 12 14613818 14613818 G A ATF7IP Missense_Mutation p.V850M 0.21 deleterious_low_confidence(0) unknown(0) TCGA-CV-5978-01 12 19475473 19475473 C T PLEKHA5 Silent p.L774L 0.37 TCGA-CV-5978-01 12 33532866 33532866 G T SYT10 Nonsense_Mutation p.C467* 0.17 TCGA-CV-5978-01 12 40734242 40734242 C G LRRK2 Nonsense_Mutation p.S2032* 0.19 TCGA-CV-5978-01 12 57619381 57619381 G A NXPH4 Missense_Mutation p.E260K 0.37 deleterious(0) probably_damaging(0.996) TCGA-CV-5978-01 12 7076686 7076686 G A PHB2 Intron 0.30 TCGA-CV-5978-01 12 7649408 7649408 C G CD163 Splice_Site p.X367_splice 0.10 TCGA-CV-5978-01 12 85680630 85680630 G C ALX1 Splice_Site p.X178_splice 0.24 TCGA-CV-5978-01 13 103520608 103520608 G C BIVM-ERCC5 Splice_Site p.X1318_splice 0.06 TCGA-CV-5978-01 13 109779811 109779811 C A MYO16 Missense_Mutation p.P1300T 0.43 deleterious(0.02) probably_damaging(1) TCGA-CV-5978-01 13 64321279 64321279 G T AL445989.1 Missense_Mutation p.G116C 0.32 unknown(0) TCGA-CV-5978-01 14 103573762 103573762 C T EXOC3L4 Missense_Mutation p.P528L 0.44 deleterious(0.04) benign(0.382) TCGA-CV-5978-01 14 31071100 31071100 G T G2E3 Nonsense_Mutation p.G293* 0.48 TCGA-CV-5978-01 14 59105250 59105250 G T DACT1 Silent p.L110L 0.33 TCGA-CV-5978-01 14 69808451 69808451 G A GALNT16 Nonsense_Mutation p.W414* 0.36 TCGA-CV-5978-01 14 70633619 70633619 G T SLC8A3 Silent p.P507P 0.44 TCGA-CV-5978-01 14 96797952 96797952 T C ATG2B Silent p.S497S 0.19 TCGA-CV-5978-01 15 102516484 102516484 C G WASH3P 3'Flank 0.34 TCGA-CV-5978-01 15 32926132 32926132 A G ARHGAP11A Splice_Site p.X412_splice 0.38 TCGA-CV-5978-01 15 66821212 66821212 C T ZWILCH Missense_Mutation p.A331V 0.17 tolerated(0.07) probably_damaging(0.978) TCGA-CV-5978-01 15 74032449 74032449 G A C15orf59 Missense_Mutation p.H231Y 0.06 tolerated(0.67) benign(0) TCGA-CV-5978-01 15 75641231 75641231 G T NEIL1 5'UTR 0.29 TCGA-CV-5978-01 15 79080663 79080663 C T ADAMTS7 Missense_Mutation p.R411Q 0.32 tolerated(0.07) benign(0.127) TCGA-CV-5978-01 15 86311590 86311605 GTACCGCCAAGGCTGG - KLHL25 Frame_Shift_Del p.W482Lfs*38 0.20 TCGA-CV-5978-01 15 88472648 88472648 G A NTRK3 Missense_Mutation p.A636V 0.16 deleterious(0.02) probably_damaging(0.991) TCGA-CV-5978-01 15 91185222 91185222 G T CRTC3 Missense_Mutation p.E570D 0.10 tolerated(0.39) benign(0.09) TCGA-CV-5978-01 16 3139838 3139838 G A ZSCAN10 Missense_Mutation p.R478C 0.25 deleterious(0.01) possibly_damaging(0.824) TCGA-CV-5978-01 16 57180102 57180102 G A CPNE2 Missense_Mutation p.V470M 0.33 deleterious(0) probably_damaging(0.983) TCGA-CV-5978-01 16 61891110 61891110 C A CDH8 Missense_Mutation p.A194S 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-CV-5978-01 16 66642247 66642247 G A CMTM3 Silent p.A61A 0.09 TCGA-CV-5978-01 17 20224924 20224924 G A AC004702.2 Intron 0.29 TCGA-CV-5978-01 17 37563664 37563664 T C MED1 3'UTR 0.36 TCGA-CV-5978-01 17 48602314 48602314 C T MYCBPAP Missense_Mutation p.P614L 0.29 deleterious(0.01) probably_damaging(1) TCGA-CV-5978-01 17 7106115 7106115 C T DLG4 Intron 0.29 TCGA-CV-5978-01 17 7578416 7578416 C A TP53 Missense_Mutation p.V172F 0.46 deleterious(0) probably_damaging(0.984) TCGA-CV-5978-01 17 9674889 9674889 G A DHRS7C Silent p.Y285Y 0.21 TCGA-CV-5978-01 18 11893517 11893517 C T MPPE1 Missense_Mutation p.V114I 0.14 tolerated(0.15) benign(0.078) TCGA-CV-5978-01 18 13825968 13825968 C A MC5R Missense_Mutation p.H68Q 0.18 tolerated(0.09) probably_damaging(0.998) TCGA-CV-5978-01 18 14106206 14106206 T C ZNF519 Silent p.K111K 0.17 TCGA-CV-5978-01 18 31322978 31322978 G T ASXL3 Missense_Mutation p.D1056Y 0.25 probably_damaging(0.999) TCGA-CV-5978-01 18 40323626 40323626 G T RIT2 Silent p.T162T 0.37 TCGA-CV-5978-01 18 44266168 44266168 T A ST8SIA5 Missense_Mutation p.R180W 0.08 benign(0.009) TCGA-CV-5978-01 19 10610277 10610277 T A KEAP1 Missense_Mutation p.I145F 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-CV-5978-01 19 2112894 2112894 C T AP3D1 Missense_Mutation p.E918K 0.17 tolerated_low_confidence(0.65) benign(0.042) TCGA-CV-5978-01 19 30936564 30936564 G A ZNF536 Missense_Mutation p.G699R 0.52 deleterious(0.01) probably_damaging(1) TCGA-CV-5978-01 19 33131245 33131245 T C ANKRD27 Silent p.L317L 0.28 TCGA-CV-5978-01 19 36430643 36430643 C T LRFN3 Silent p.L106L 0.14 TCGA-CV-5978-01 19 36517871 36517871 G A CLIP3 Missense_Mutation p.A128V 0.10 deleterious(0.02) possibly_damaging(0.793) TCGA-CV-5978-01 19 40424009 40424009 C A FCGBP Missense_Mutation p.V732F 0.26 probably_damaging(0.985) TCGA-CV-5978-01 19 51871727 51871729 TTG - CLDND2 In_Frame_Del p.Q35del 0.27 TCGA-CV-5978-01 19 57723895 57723895 A T ZNF264 Missense_Mutation p.H477L 0.24 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 19 6709693 6709693 A T C3 Splice_Site p.X615_splice 0.08 TCGA-CV-5978-01 19 9059076 9059076 T C MUC16 Missense_Mutation p.H9457R 0.21 unknown(0) TCGA-CV-5978-01 19 9062974 9062974 C A MUC16 Missense_Mutation p.V8158F 0.17 unknown(0) TCGA-CV-5978-01 1 1273764 1273764 C A DVL1 Silent p.R439R 0.25 TCGA-CV-5978-01 1 150974779 150974779 C G FAM63A Missense_Mutation p.R153S 0.09 tolerated(0.16) benign(0.076) TCGA-CV-5978-01 1 153910068 153910068 G A DENND4B Missense_Mutation p.R710W 0.24 deleterious(0) benign(0.308) TCGA-CV-5978-01 1 154480950 154480950 T C TDRD10 Missense_Mutation p.I45T 0.34 tolerated(0.1) benign(0.009) TCGA-CV-5978-01 1 159175705 159175705 C G DARC Missense_Mutation p.A161G 0.10 tolerated(0.18) possibly_damaging(0.604) TCGA-CV-5978-01 1 160124906 160124906 C A ATP1A4 Silent p.T93T 0.20 TCGA-CV-5978-01 1 160535331 160535331 C T CD84 Missense_Mutation p.R84Q 0.14 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 1 171956944 171956944 C A DNM3 Missense_Mutation p.H128Q 0.10 deleterious(0.04) benign(0.123) TCGA-CV-5978-01 1 176708895 176708895 T C PAPPA2 Missense_Mutation p.L1311P 0.09 deleterious(0) possibly_damaging(0.907) TCGA-CV-5978-01 1 190067913 190067913 G - BRINP3 Frame_Shift_Del p.I513Ffs*25 0.16 TCGA-CV-5978-01 1 192127873 192127873 G A RGS18 Missense_Mutation p.E36K 0.30 tolerated(0.14) possibly_damaging(0.606) TCGA-CV-5978-01 1 197237478 197237478 G A CRB1 5'UTR 0.14 TCGA-CV-5978-01 1 206631989 206631989 C T SRGAP2 Missense_Mutation p.S757F 0.60 tolerated(0.37) benign(0.196) TCGA-CV-5978-01 1 207646235 207646235 A G CR2 Silent p.G563G 0.11 TCGA-CV-5978-01 1 230903376 230903376 C A CAPN9 Missense_Mutation p.T209N 0.24 deleterious(0.01) possibly_damaging(0.856) TCGA-CV-5978-01 1 248058896 248058896 G A OR2W3 Missense_Mutation p.G3E 0.20 tolerated(1) benign(0.002) TCGA-CV-5978-01 1 248652138 248652138 C A OR2T5 Silent p.P83P 0.19 TCGA-CV-5978-01 1 248801846 248801846 A G OR2T35 Silent p.F238F 0.20 TCGA-CV-5978-01 1 46726604 46726604 A G RAD54L Missense_Mutation p.N228S 0.09 deleterious(0.02) benign(0.265) TCGA-CV-5978-01 1 68896799 68896799 G A RPE65 Missense_Mutation p.P467S 0.35 deleterious(0) possibly_damaging(0.907) TCGA-CV-5978-01 1 75199080 75199080 G T TYW3 Missense_Mutation p.G51V 0.11 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 20 13846030 13846030 A G SEL1L2 Intron 0.29 TCGA-CV-5978-01 20 18379176 18379176 C T DZANK1 Silent p.R509R 0.23 TCGA-CV-5978-01 20 31024686 31024686 A T ASXL1 Missense_Mutation p.S1391C 0.19 deleterious(0) possibly_damaging(0.711) TCGA-CV-5978-01 21 41711115 41711115 C T DSCAM Missense_Mutation p.G480R 0.35 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 21 46386972 46386972 G C FAM207A Missense_Mutation p.E126Q 0.52 tolerated(0.07) probably_damaging(0.936) TCGA-CV-5978-01 21 47423497 47423497 C A COL6A1 Missense_Mutation p.P886Q 0.19 tolerated(0.58) possibly_damaging(0.879) TCGA-CV-5978-01 22 35661578 35661578 G C HMGXB4 Missense_Mutation p.E399D 0.20 tolerated(0.88) benign(0.002) TCGA-CV-5978-01 22 38016247 38016247 T C GGA1 Silent p.Y102Y 0.34 TCGA-CV-5978-01 2 122038776 122038776 G A TFCP2L1 Missense_Mutation p.P45L 0.21 tolerated(0.48) benign(0.069) TCGA-CV-5978-01 2 127447862 127447862 C A GYPC Silent p.T27T 0.18 TCGA-CV-5978-01 2 127453707 127453707 T G GYPC Missense_Mutation p.Y126D 0.33 deleterious(0) probably_damaging(0.998) TCGA-CV-5978-01 2 128262822 128262822 A G IWS1 Silent p.P219P 0.14 TCGA-CV-5978-01 2 131521962 131521962 C A AMER3 Missense_Mutation p.Q773K 0.16 tolerated(0.96) benign(0.013) TCGA-CV-5978-01 2 141208173 141208173 C A LRP1B Missense_Mutation p.D3341Y 0.25 probably_damaging(0.961) TCGA-CV-5978-01 2 178098932 178098952 TCAAATACTTCTCGACTTACT - NFE2L2 In_Frame_Del p.V32_D38del 0.19 TCGA-CV-5978-01 2 220501091 220501091 C G SLC4A3 Silent p.L780L 0.28 TCGA-CV-5978-01 2 222347263 222347263 T A EPHA4 Missense_Mutation p.K376M 0.24 tolerated(0.1) benign(0.353) TCGA-CV-5978-01 2 75425690 75425690 G A TACR1 Missense_Mutation p.T124M 0.14 deleterious(0.04) probably_damaging(0.937) TCGA-CV-5978-01 2 90139313 90139313 G A IGKV1D-16 Silent p.Q28Q 0.33 TCGA-CV-5978-01 2 90211999 90211999 C A IGKV3D-11 Missense_Mutation p.L31M 0.17 tolerated(0.08) probably_damaging(0.973) TCGA-CV-5978-01 3 108195314 108195314 A T MYH15 Missense_Mutation p.V408E 0.10 deleterious(0) possibly_damaging(0.875) TCGA-CV-5978-01 3 108688550 108688550 T A MORC1 Missense_Mutation p.Q857L 0.14 deleterious(0) benign(0.051) TCGA-CV-5978-01 3 130282012 130282012 C A COL6A6 Missense_Mutation p.S55R 0.15 tolerated(0.06) benign(0.211) TCGA-CV-5978-01 3 146173132 146173132 G T PLSCR2 Missense_Mutation p.S145Y 0.13 tolerated(1) benign(0.033) TCGA-CV-5978-01 3 155623996 155623996 T C GMPS Missense_Mutation p.V157A 0.46 deleterious(0) probably_damaging(0.957) TCGA-CV-5978-01 3 160148867 160148867 A C SMC4 Missense_Mutation p.E996D 0.10 tolerated(0.08) benign(0.114) TCGA-CV-5978-01 3 170198783 170198783 G A SLC7A14 Nonsense_Mutation p.R430* 0.09 TCGA-CV-5978-01 3 175184932 175184932 G C NAALADL2 Missense_Mutation p.G498A 0.06 tolerated(0.47) possibly_damaging(0.851) TCGA-CV-5978-01 3 38597251 38597251 A G SCN5A Silent p.L1480L 0.39 TCGA-CV-5978-01 3 44929184 44929184 C G TGM4 Missense_Mutation p.P66R 0.41 tolerated(0.17) benign(0.012) TCGA-CV-5978-01 3 48725981 48725982 - A IP6K2 Frame_Shift_Ins p.D336* 0.31 TCGA-CV-5978-01 3 52021202 52021202 G A ACY1 Missense_Mutation p.E233K 0.43 deleterious(0) possibly_damaging(0.861) TCGA-CV-5978-01 3 9027554 9027554 C A SRGAP3 Silent p.T983T 0.24 TCGA-CV-5978-01 4 110223145 110223145 C T COL25A1 Missense_Mutation p.G11R 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-5978-01 4 122836027 122836027 G A TRPC3 Nonsense_Mutation p.Q417* 0.16 TCGA-CV-5978-01 4 123249348 123249348 G C KIAA1109 Silent p.V3695V 0.11 TCGA-CV-5978-01 4 134072460 134072460 G A PCDH10 Missense_Mutation p.E389K 0.12 tolerated(0.06) possibly_damaging(0.852) TCGA-CV-5978-01 4 143191916 143191916 C G INPP4B Missense_Mutation p.G172A 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-CV-5978-01 4 144135671 144135671 C T USP38 Missense_Mutation p.H848Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-5978-01 4 164394370 164394370 G C TKTL2 Missense_Mutation p.H173D 0.14 deleterious(0.03) possibly_damaging(0.827) TCGA-CV-5978-01 4 176622906 176622906 C A GPM6A Missense_Mutation p.C17F 0.10 deleterious(0) probably_damaging(0.998) TCGA-CV-5978-01 4 177071267 177071267 A G WDR17 Silent p.E731E 0.18 TCGA-CV-5978-01 5 10992697 10992697 G C CTNND2 Missense_Mutation p.I1059M 0.35 tolerated(0.14) benign(0.416) TCGA-CV-5978-01 5 11111052 11111052 A C CTNND2 Missense_Mutation p.L794R 0.13 deleterious(0.02) benign(0.183) TCGA-CV-5978-01 5 11565132 11565132 C T CTNND2 Missense_Mutation p.A71T 0.13 tolerated(0.13) possibly_damaging(0.776) TCGA-CV-5978-01 5 13717426 13717426 T G DNAH5 Missense_Mutation p.K4235Q 0.13 possibly_damaging(0.728) TCGA-CV-5978-01 5 13788883 13788883 C T DNAH5 Silent p.V2863V 0.30 TCGA-CV-5978-01 5 13864670 13864670 C T DNAH5 Missense_Mutation p.E1478K 0.17 benign(0.103) TCGA-CV-5978-01 5 13885171 13885171 A C DNAH5 Silent p.L970L 0.20 TCGA-CV-5978-01 5 140573798 140573798 C A PCDHB10 Nonsense_Mutation p.S558* 0.46 TCGA-CV-5978-01 5 140750005 140750005 G T PCDHGB3 Missense_Mutation p.R15L 0.33 tolerated(0.19) possibly_damaging(0.54) TCGA-CV-5978-01 5 19721468 19721468 C A CDH18 Missense_Mutation p.D211Y 0.29 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 5 21752180 21752180 A G CDH12 Missense_Mutation p.I684T 0.11 tolerated(0.1) benign(0.365) TCGA-CV-5978-01 5 31318062 31318062 C A CDH6 Intron 0.09 TCGA-CV-5978-01 6 102074485 102074485 G T GRIK2 Missense_Mutation p.V172F 0.17 tolerated(0.54) probably_damaging(0.93) TCGA-CV-5978-01 6 109787534 109787534 C A ZBTB24 Missense_Mutation p.Q538H 0.34 tolerated(0.14) benign(0.049) TCGA-CV-5978-01 6 165706833 165706833 C G C6orf118 Intron 0.17 TCGA-CV-5978-01 6 27777865 27777865 A T HIST1H3H Missense_Mutation p.K5M 0.36 deleterious_low_confidence(0) benign(0.026) TCGA-CV-5978-01 6 34741320 34741320 G A SNRPC Silent p.R151R 0.17 TCGA-CV-5978-01 6 43325349 43325349 C T ZNF318 Missense_Mutation p.D235N 0.12 benign(0.106) TCGA-CV-5978-01 6 43488440 43488440 G A POLR1C Missense_Mutation p.V245M 0.05 deleterious(0) possibly_damaging(0.722) TCGA-CV-5978-01 6 49425487 49425487 C A MUT Nonsense_Mutation p.E224* 0.41 TCGA-CV-5978-01 6 5004269 5004269 G T RPP40 5'UTR 0.43 TCGA-CV-5978-01 6 72892001 72892001 G C RIMS1 Missense_Mutation p.G276A 0.30 tolerated(0.27) benign(0.001) TCGA-CV-5978-01 6 96651233 96651233 G T FUT9 Missense_Mutation p.V68L 0.19 tolerated(0.67) benign(0.005) TCGA-CV-5978-01 7 101747722 101747723 - T CUX1 Frame_Shift_Ins p.A184Cfs*22 0.11 TCGA-CV-5978-01 7 106898718 106898718 C T COG5 Silent p.K593K 0.09 TCGA-CV-5978-01 7 142423476 142423476 G A TRBV27 Silent p.Q44Q 0.23 TCGA-CV-5978-01 7 143701665 143701665 G T OR6B1 Missense_Mutation p.M192I 0.12 tolerated(0.18) benign(0.152) TCGA-CV-5978-01 7 149522074 149522074 T C SSPO RNA 0.23 TCGA-CV-5978-01 7 21678667 21678667 G A DNAH11 Missense_Mutation p.G1648E 0.55 probably_damaging(0.927) TCGA-CV-5978-01 7 75912371 75912371 A G SRRM3 Missense_Mutation p.K562R 0.27 deleterious(0.01) benign(0.292) TCGA-CV-5978-01 7 81626562 81626562 G T CACNA2D1 Missense_Mutation p.P532H 0.20 tolerated(0.14) possibly_damaging(0.792) TCGA-CV-5978-01 8 103564144 103564144 C G ODF1 Silent p.R63R 0.27 TCGA-CV-5978-01 8 113585863 113585863 C T CSMD3 Silent p.T1303T 0.26 TCGA-CV-5978-01 8 113599379 113599379 G T CSMD3 Nonsense_Mutation p.C1267* 0.26 TCGA-CV-5978-01 8 120629736 120629736 T A ENPP2 Missense_Mutation p.S183C 0.26 deleterious(0.02) possibly_damaging(0.649) TCGA-CV-5978-01 8 12943411 12943411 G T DLC1 Missense_Mutation p.S1499Y 0.29 tolerated(0.12) possibly_damaging(0.861) TCGA-CV-5978-01 8 139164844 139164844 T A FAM135B Missense_Mutation p.E625V 0.10 deleterious(0.03) benign(0.319) TCGA-CV-5978-01 8 15978072 15978072 G T MSR1 Missense_Mutation p.H359Q 0.29 deleterious(0.03) benign(0.064) TCGA-CV-5978-01 8 2855570 2855570 G A CSMD1 Silent p.S2780S 0.12 TCGA-CV-5978-01 8 30705035 30705035 T C TEX15 Missense_Mutation p.Y500C 0.16 tolerated(0.09) benign(0.006) TCGA-CV-5978-01 8 38261968 38261968 A T LETM2 Missense_Mutation p.T341S 0.31 deleterious(0.01) benign(0.41) TCGA-CV-5978-01 8 53570560 53570560 T A RB1CC1 Nonsense_Mutation p.K640* 0.26 TCGA-CV-5978-01 8 73848938 73848938 G A KCNB2 Missense_Mutation p.V450I 0.24 tolerated(0.05) benign(0.253) TCGA-CV-5978-01 8 8998840 8998840 C A PPP1R3B Nonsense_Mutation p.E108* 0.17 TCGA-CV-5978-01 9 101907135 101907135 T C TGFBR1 Silent p.I365I 0.19 TCGA-CV-5978-01 9 116185750 116185750 G T C9orf43 Nonsense_Mutation p.E210* 0.10 TCGA-CV-5978-01 9 125315468 125315468 G A OR1N2 Missense_Mutation p.R7H 0.12 deleterious_low_confidence(0.04) benign(0) TCGA-CV-5978-01 9 126219701 126219701 C T DENND1A Missense_Mutation p.R371Q 0.06 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 9 130941207 130941207 C T CIZ1 Missense_Mutation p.V427I 0.04 tolerated_low_confidence(0.11) benign(0) TCGA-CV-5978-01 9 133799269 133799269 T A FIBCD1 Splice_Site p.X238_splice 0.11 TCGA-CV-5978-01 9 137642722 137642722 G T COL5A1 Missense_Mutation p.Q552H 0.32 probably_damaging(0.99) TCGA-CV-5978-01 9 34370855 34370855 A C KIAA1161 Missense_Mutation p.L662R 0.46 tolerated(0.27) probably_damaging(0.951) TCGA-CV-5978-01 9 84531608 84531608 T C SPATA31D5P RNA 0.21 TCGA-CV-5978-01 9 86506407 86506407 T - KIF27 Frame_Shift_Del p.I538* 0.20 TCGA-CV-5978-01 X 100656686 100656686 C T GLA Missense_Mutation p.D161N 0.38 deleterious(0.02) benign(0.011) TCGA-CV-5978-01 X 10188916 10188916 G T CLCN4 Missense_Mutation p.G731W 0.28 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 X 105153085 105153085 G T NRK Missense_Mutation p.Q485H 0.11 deleterious(0.02) benign(0.018) TCGA-CV-5978-01 X 114869295 114869295 G A PLS3 Missense_Mutation p.G229R 0.09 deleterious(0) probably_damaging(1) TCGA-CV-5978-01 X 129484680 129484680 T C SLC25A14 Missense_Mutation p.I158T 0.09 deleterious(0) possibly_damaging(0.742) TCGA-CV-5978-01 X 136112567 136112567 C T GPR101 Missense_Mutation p.V423M 0.11 tolerated(0.18) possibly_damaging(0.868) TCGA-CV-5978-01 X 152960179 152960179 C G SLC6A8 Missense_Mutation p.I534M 0.24 tolerated(0.07) probably_damaging(0.917) TCGA-CV-5978-01 X 153195468 153195468 C A NAA10 Missense_Mutation p.S227I 0.07 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-CV-5978-01 X 155004525 155004525 G C SPRY3 3'UTR 0.42 TCGA-CV-5978-01 X 18283736 18283736 G T SCML2 Missense_Mutation p.P306Q 0.08 deleterious(0.02) benign(0.342) TCGA-CV-5978-01 X 18616687 18616687 G T CDKL5 Missense_Mutation p.A311S 0.15 tolerated_low_confidence(1) benign(0.005) TCGA-CV-5978-01 X 18972377 18972377 C A PHKA2 Nonsense_Mutation p.E78* 0.28 TCGA-CV-5978-01 X 32716006 32716006 C T DMD Missense_Mutation p.R314Q 0.29 benign(0.014) TCGA-CV-5978-01 X 34150048 34150048 C A FAM47A Silent p.A116A 0.17 TCGA-CV-5978-01 X 39913236 39913236 C A BCOR Missense_Mutation p.D1627Y 0.19 deleterious(0.02) benign(0.017) TCGA-CV-5978-01 X 39913587 39913587 C T BCOR Splice_Site p.X1581_splice 0.25 TCGA-CV-5978-01 X 39933796 39933796 G T BCOR Nonsense_Mutation p.S268* 0.24 TCGA-CV-5978-01 X 48374170 48374170 G A PORCN Missense_Mutation p.A338T 0.23 tolerated(0.08) probably_damaging(0.939) TCGA-CV-5978-01 X 49853388 49853388 G A CLCN5 Missense_Mutation p.V531I 0.24 tolerated(0.43) benign(0.325) TCGA-CV-5978-01 X 53619397 53619397 G A HUWE1 Silent p.S1311S 0.25 TCGA-CV-5978-01 X 54472832 54472832 G C FGD1 Missense_Mutation p.R866G 0.24 tolerated(0.07) probably_damaging(0.964) TCGA-CV-5978-01 X 54482960 54482960 A T FGD1 Missense_Mutation p.N559K 0.09 deleterious(0) possibly_damaging(0.819) TCGA-CV-5978-01 X 54985328 54985328 G T PFKFB1 Silent p.R139R 0.24 TCGA-CV-5978-01 X 55284929 55284929 T G PAGE3 3'UTR 0.29 TCGA-CV-5978-01 X 63490948 63490948 C A MTMR8 Missense_Mutation p.W496L 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-5978-01 X 73962022 73962022 C A KIAA2022 Silent p.T790T 0.05 TCGA-CV-5978-01 X 76938250 76938250 G T ATRX Missense_Mutation p.A833D 0.12 benign(0.093) TCGA-CV-5978-01 X 8768217 8768217 G T FAM9A 5'UTR 0.36 TCGA-CV-5978-01 X 9660274 9660274 G T TBL1X Missense_Mutation p.V291F 0.21 deleterious(0) probably_damaging(1) TCGA-CV-5979-01 10 114919707 114919707 G A TCF7L2 Intron 0.49 TCGA-CV-5979-01 10 135026377 135026377 C T KNDC1 Missense_Mutation p.T1465M 0.44 deleterious(0.05) possibly_damaging(0.777) TCGA-CV-5979-01 10 3178006 3178006 A G PFKP Missense_Mutation p.E734G 0.81 deleterious(0.02) benign(0.149) TCGA-CV-5979-01 11 198284 198284 A G ODF3 Silent p.R132R 0.28 TCGA-CV-5979-01 11 6704488 6704488 C T MRPL17 Missense_Mutation p.V14I 0.08 deleterious(0.04) benign(0.264) TCGA-CV-5979-01 12 107113755 107113755 C A RFX4 Missense_Mutation p.H395N 0.31 tolerated(0.51) benign(0.032) TCGA-CV-5979-01 12 56547746 56547746 C A MYL6B Missense_Mutation p.P15H 0.07 deleterious_low_confidence(0) unknown(0) TCGA-CV-5979-01 14 20216155 20216155 G A OR4Q3 Missense_Mutation p.C190Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-5979-01 14 21762877 21762877 C T RPGRIP1 Missense_Mutation p.R43W 0.36 deleterious(0.03) benign(0.091) TCGA-CV-5979-01 15 43821514 43821514 C A MAP1A Missense_Mutation p.P2615T 0.52 probably_damaging(0.999) TCGA-CV-5979-01 15 49097837 49097837 C A CEP152 Missense_Mutation p.D4Y 0.06 deleterious(0) probably_damaging(1) TCGA-CV-5979-01 15 56665657 56665657 G T TEX9 Missense_Mutation p.L46F 0.48 deleterious(0) probably_damaging(0.999) TCGA-CV-5979-01 16 87445930 87445930 T G ZCCHC14 Missense_Mutation p.Q662H 0.60 deleterious(0.01) probably_damaging(0.997) TCGA-CV-5979-01 17 39740135 39740135 G T KRT14 Silent p.V268V 0.39 TCGA-CV-5979-01 17 71282113 71282113 T C CDC42EP4 Missense_Mutation p.D176G 0.48 tolerated(0.18) probably_damaging(0.941) TCGA-CV-5979-01 17 7190036 7190036 C T SLC2A4 3'UTR 0.26 TCGA-CV-5979-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.34 deleterious(0) probably_damaging(1) TCGA-CV-5979-01 17 78326742 78326742 C A RNF213 Missense_Mutation p.L3436M 0.06 probably_damaging(0.999) TCGA-CV-5979-01 19 1818781 1818781 G A REXO1 Silent p.N942N 0.38 TCGA-CV-5979-01 19 8576734 8576734 T A ZNF414 Missense_Mutation p.D214V 0.62 deleterious(0.02) possibly_damaging(0.849) TCGA-CV-5979-01 1 162124256 162124256 G A NOS1AP Missense_Mutation p.R56H 0.41 deleterious(0.01) benign(0.347) TCGA-CV-5979-01 1 171086625 171086625 C A FMO3 3'UTR 0.44 TCGA-CV-5979-01 1 172411036 172411036 G A PIGC Silent p.L243L 0.59 TCGA-CV-5979-01 1 197112489 197112489 A G ASPM Missense_Mutation p.L298P 0.38 tolerated(0.09) benign(0.03) TCGA-CV-5979-01 20 42208658 42208658 A G SGK2 Missense_Mutation p.D359G 0.40 deleterious(0.03) possibly_damaging(0.831) TCGA-CV-5979-01 20 62328365 62328365 G A TNFRSF6B Nonsense_Mutation p.W82* 0.25 TCGA-CV-5979-01 21 46047662 46047662 T A KRTAP10-9 Missense_Mutation p.C192S 0.04 tolerated(0.06) unknown(0) TCGA-CV-5979-01 2 168105632 168105632 A G XIRP2 Missense_Mutation p.N2577S 0.49 benign(0.015) TCGA-CV-5979-01 2 198570092 198570092 C G MARS2 5'UTR 0.45 TCGA-CV-5979-01 2 32481961 32481961 T C NLRC4 Intron 0.18 TCGA-CV-5979-01 3 137749947 137749947 G T CLDN18 Missense_Mutation p.E250D 0.38 tolerated_low_confidence(0.5) benign(0.003) TCGA-CV-5979-01 3 51198105 51198105 G T DOCK3 Nonsense_Mutation p.E337* 0.38 TCGA-CV-5979-01 4 155490819 155490819 C T FGB Missense_Mutation p.S371L 0.32 deleterious(0) possibly_damaging(0.704) TCGA-CV-5979-01 5 173534535 173534535 C G NSG2 3'UTR 0.29 TCGA-CV-5979-01 5 173534536 173534536 G C NSG2 3'UTR 0.29 TCGA-CV-5979-01 6 10529618 10529618 G A GCNT2 Silent p.S158S 0.39 TCGA-CV-5979-01 6 139167808 139167808 G A ECT2L Silent p.A299A 0.43 TCGA-CV-5979-01 6 146276439 146276439 C T SHPRH Missense_Mutation p.R7H 0.44 deleterious_low_confidence(0.04) benign(0.021) TCGA-CV-5979-01 8 139164859 139164859 T A FAM135B Missense_Mutation p.K620M 0.29 deleterious(0) possibly_damaging(0.868) TCGA-CV-5979-01 8 41530033 41530033 C G ANK1 Missense_Mutation p.R1686S 0.04 tolerated_low_confidence(0.12) benign(0.166) TCGA-CV-5979-01 X 1484134 1484134 C T IL3RA Missense_Mutation p.P288L 0.31 deleterious(0.01) probably_damaging(0.928) TCGA-CV-5979-01 X 18195875 18195875 G A BEND2 Missense_Mutation p.P482S 0.12 deleterious(0) probably_damaging(0.925) TCGA-CV-6003-01 10 17142048 17142048 C T CUBN Missense_Mutation p.R574K 0.16 tolerated(1) benign(0.081) TCGA-CV-6003-01 10 293375 293375 G A ZMYND11 Missense_Mutation p.R399Q 0.23 tolerated(0.18) probably_damaging(0.992) TCGA-CV-6003-01 10 33208820 33208820 C T ITGB1 Missense_Mutation p.A488T 0.11 tolerated(0.16) benign(0.386) TCGA-CV-6003-01 10 55566403 55566403 G C PCDH15 Missense_Mutation p.S1661C 0.34 deleterious_low_confidence(0) benign(0.359) TCGA-CV-6003-01 10 85903817 85903817 A G GHITM Missense_Mutation p.Y99C 0.38 deleterious(0) probably_damaging(0.999) TCGA-CV-6003-01 10 97810064 97810064 C T CCNJ Missense_Mutation p.R41W 0.30 deleterious(0.05) probably_damaging(0.995) TCGA-CV-6003-01 11 12265567 12265567 C A MICAL2 Missense_Mutation p.H898N 0.13 tolerated_low_confidence(0.22) benign(0.031) TCGA-CV-6003-01 11 20119263 20119263 G A NAV2 Silent p.E2110E 0.09 TCGA-CV-6003-01 11 56432082 56432082 A G OR5AR1 Silent p.K307K 0.32 TCGA-CV-6003-01 11 640559 640559 G A DRD4 Missense_Mutation p.E406K 0.25 deleterious(0) probably_damaging(0.98) TCGA-CV-6003-01 11 64065047 64065047 G A KCNK4 Missense_Mutation p.E195K 0.12 deleterious(0) benign(0.098) TCGA-CV-6003-01 11 64627529 64627529 G A EHD1 Missense_Mutation p.P261L 0.09 deleterious(0) possibly_damaging(0.869) TCGA-CV-6003-01 11 6704513 6704513 G C MRPL17 Silent p.V5V 0.54 TCGA-CV-6003-01 11 71942214 71942214 C T INPPL1 Missense_Mutation p.T493M 0.48 tolerated(0.22) probably_damaging(0.965) TCGA-CV-6003-01 11 75152211 75152211 G A GDPD5 Silent p.I490I 0.23 TCGA-CV-6003-01 12 113332462 113332462 G A RPH3A Missense_Mutation p.E619K 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-CV-6003-01 12 406330 406330 G A KDM5A Missense_Mutation p.P1371S 0.48 deleterious(0.03) benign(0.344) TCGA-CV-6003-01 12 48185772 48185772 G A HDAC7 Missense_Mutation p.S565L 0.35 deleterious(0) probably_damaging(0.995) TCGA-CV-6003-01 12 48737262 48737262 T C ZNF641 Missense_Mutation p.K271E 0.19 deleterious(0) probably_damaging(0.98) TCGA-CV-6003-01 12 52627278 52627278 C T KRT7 Silent p.V66V 0.62 TCGA-CV-6003-01 12 91348029 91348029 G A CCER1 Missense_Mutation p.A164V 0.26 tolerated(1) benign(0.401) TCGA-CV-6003-01 12 97043730 97043733 ACAA - C12orf55 Frame_Shift_Del p.T1586Ffs*23 0.45 TCGA-CV-6003-01 12 97085024 97085024 G T C12orf55 Missense_Mutation p.C2067F 0.19 deleterious(0.04) benign(0) TCGA-CV-6003-01 13 113728844 113728844 G A MCF2L Silent p.L361L 0.11 TCGA-CV-6003-01 14 23447637 23447651 TGCACTTGATACAGG - AJUBA In_Frame_Del p.T337_C341del 0.74 TCGA-CV-6003-01 14 71517433 71517433 G T PCNX Missense_Mutation p.W1468L 0.79 deleterious(0) probably_damaging(0.998) TCGA-CV-6003-01 14 95570037 95570037 G A DICER1 Silent p.S1232S 0.31 TCGA-CV-6003-01 15 25468205 25468205 G C SNORD115-27 3'Flank 0.59 TCGA-CV-6003-01 15 75932053 75932054 - GC IMP3 Frame_Shift_Ins p.S153Afs*20 0.28 TCGA-CV-6003-01 15 99250815 99250815 G T IGF1R Missense_Mutation p.R40L 0.23 deleterious(0) probably_damaging(0.916) TCGA-CV-6003-01 16 2314602 2314602 T C RNPS1 Missense_Mutation p.K15E 0.42 deleterious_low_confidence(0) unknown(0) TCGA-CV-6003-01 16 31091299 31091299 C T ZNF646 Silent p.L1218L 0.31 TCGA-CV-6003-01 16 51174003 51174003 G A SALL1 Silent p.I710I 0.38 TCGA-CV-6003-01 16 57719693 57719693 G A GPR97 Silent p.A465A 0.23 TCGA-CV-6003-01 16 68289698 68289698 C T PLA2G15 Missense_Mutation p.R178C 0.42 deleterious(0) probably_damaging(0.932) TCGA-CV-6003-01 16 69056846 69056846 G C TANGO6 Missense_Mutation p.Q986H 0.25 deleterious(0) possibly_damaging(0.76) TCGA-CV-6003-01 16 74486093 74486093 A C GLG1 Intron 0.29 TCGA-CV-6003-01 16 84255948 84255948 G T KCNG4 Missense_Mutation p.Q479K 0.30 tolerated(0.71) benign(0.004) TCGA-CV-6003-01 17 34001260 34001260 G A AP2B1 Silent p.G748G 0.31 TCGA-CV-6003-01 17 38320341 38320341 G A CASC3 Missense_Mutation p.D465N 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-CV-6003-01 17 48145460 48145460 C T ITGA3 Missense_Mutation p.S152L 0.16 tolerated(0.21) benign(0.005) TCGA-CV-6003-01 17 75495433 75495433 G A SEPT9 3'UTR 0.30 TCGA-CV-6003-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.74 TCGA-CV-6003-01 18 13741657 13741657 T C RNMT Missense_Mutation p.F314S 0.24 deleterious(0) probably_damaging(0.995) TCGA-CV-6003-01 18 63511084 63511084 C T CDH7 Missense_Mutation p.R340W 0.26 deleterious(0) probably_damaging(0.978) TCGA-CV-6003-01 18 77960806 77960806 C A PARD6G Nonsense_Mutation p.E28* 0.13 TCGA-CV-6003-01 19 45496031 45496031 C T CLPTM1 Missense_Mutation p.T629M 0.12 tolerated(0.08) possibly_damaging(0.791) TCGA-CV-6003-01 19 55221973 55221973 C A AC098784.2 3'Flank 0.28 TCGA-CV-6003-01 1 109479802 109479803 TC - CLCC1 Frame_Shift_Del p.D427Cfs*2 0.31 TCGA-CV-6003-01 1 120539834 120539834 A T NOTCH2 Nonsense_Mutation p.C179* 0.42 TCGA-CV-6003-01 1 154033013 154033013 C A NUP210L Intron 0.18 TCGA-CV-6003-01 1 161683231 161683231 C G FCRLA 3'UTR 0.20 TCGA-CV-6003-01 1 16203028 16203028 C T SPEN Missense_Mutation p.H246Y 0.51 probably_damaging(0.985) TCGA-CV-6003-01 1 182555479 182555479 G A RNASEL Nonsense_Mutation p.R155* 0.33 TCGA-CV-6003-01 1 197411572 197411573 - A CRB1 Intron 0.33 TCGA-CV-6003-01 1 22169404 22169404 C T HSPG2 Silent p.L2923L 0.11 TCGA-CV-6003-01 1 235301488 235301488 G A RBM34 Missense_Mutation p.R235C 0.41 deleterious(0) possibly_damaging(0.886) TCGA-CV-6003-01 1 23724057 23724057 C T TCEA3 Missense_Mutation p.M215I 0.16 tolerated(0.06) benign(0.007) TCGA-CV-6003-01 1 240256066 240256066 A G FMN2 Silent p.Q219Q 0.20 TCGA-CV-6003-01 1 24663602 24663602 C T GRHL3 Missense_Mutation p.P216L 0.22 tolerated(0.23) benign(0.008) TCGA-CV-6003-01 1 36060122 36060122 G T TFAP2E Missense_Mutation p.G392C 0.43 deleterious(0) probably_damaging(1) TCGA-CV-6003-01 1 40229493 40229493 C T PPIE 3'UTR 0.23 TCGA-CV-6003-01 1 95367290 95367290 C G CNN3 Missense_Mutation p.E146Q 0.21 deleterious(0.01) possibly_damaging(0.465) TCGA-CV-6003-01 20 25262744 25262744 G T PYGB Silent p.L493L 0.44 TCGA-CV-6003-01 20 33296573 33296573 C T TP53INP2 Silent p.F10F 0.09 TCGA-CV-6003-01 20 47864939 47864939 G C ZNFX1 Missense_Mutation p.T1541S 0.42 tolerated(0.7) benign(0.004) TCGA-CV-6003-01 20 57568743 57568743 C T NELFCD Missense_Mutation p.P520L 0.32 deleterious(0) probably_damaging(0.967) TCGA-CV-6003-01 21 34113745 34113745 C T PAXBP1 Intron 0.46 TCGA-CV-6003-01 22 29886350 29886350 G A NEFH Silent p.E907E 0.16 TCGA-CV-6003-01 22 47059754 47059754 C T GRAMD4 Missense_Mutation p.R207W 0.37 deleterious(0) probably_damaging(0.978) TCGA-CV-6003-01 2 101186128 101186128 G C PDCL3 Missense_Mutation p.E105Q 0.07 tolerated(0.12) possibly_damaging(0.567) TCGA-CV-6003-01 2 129026288 129026288 C T HS6ST1 Silent p.T228T 0.07 TCGA-CV-6003-01 2 166908262 166908262 C G SCN1A Missense_Mutation p.E311Q 0.19 tolerated(0.59) benign(0.029) TCGA-CV-6003-01 2 179730517 179730517 C T CCDC141 Missense_Mutation p.A901T 0.18 tolerated(1) benign(0.001) TCGA-CV-6003-01 2 185802876 185802876 T C ZNF804A Missense_Mutation p.V918A 0.28 tolerated(0.16) benign(0) TCGA-CV-6003-01 2 211471538 211471538 C T CPS1 Missense_Mutation p.R695C 0.16 deleterious(0) probably_damaging(0.983) TCGA-CV-6003-01 2 220073082 220073082 C T ZFAND2B Intron 0.19 TCGA-CV-6003-01 3 110830979 110830979 A G PVRL3 Missense_Mutation p.Q88R 0.06 deleterious(0) probably_damaging(0.992) TCGA-CV-6003-01 3 127394943 127394943 C G ABTB1 Missense_Mutation p.D102E 0.58 tolerated(0.64) benign(0.004) TCGA-CV-6003-01 3 185347618 185347618 C T SENP2 Nonsense_Mutation p.Q586* 0.14 TCGA-CV-6003-01 3 189526228 189526229 - A TP63 Frame_Shift_Ins p.I165Nfs*33 0.36 TCGA-CV-6003-01 3 50144226 50144227 AC - RBM5 Frame_Shift_Del p.Q295Efs*9 0.38 TCGA-CV-6003-01 3 9785382 9785382 G A BRPF1 Missense_Mutation p.R811H 0.61 deleterious(0) possibly_damaging(0.674) TCGA-CV-6003-01 4 126411278 126411278 C T FAT4 Missense_Mutation p.P4434L 0.54 probably_damaging(0.999) TCGA-CV-6003-01 5 140202723 140202723 G A PCDHA5 Missense_Mutation p.A455T 0.31 tolerated_low_confidence(0.07) benign(0.04) TCGA-CV-6003-01 5 140263856 140263856 C T PCDHA13 Missense_Mutation p.S668L 0.43 deleterious_low_confidence(0.04) benign(0.064) TCGA-CV-6003-01 5 140730444 140730444 G A PCDHGB1 Missense_Mutation p.R206H 0.52 tolerated(1) benign(0.006) TCGA-CV-6003-01 5 161302579 161302579 G A GABRA1 Missense_Mutation p.A164T 0.17 deleterious(0) benign(0.001) TCGA-CV-6003-01 5 176523713 176523713 G A FGFR4 Missense_Mutation p.M708I 0.19 deleterious(0) probably_damaging(0.995) TCGA-CV-6003-01 5 180338567 180338567 G A BTNL8 Missense_Mutation p.R209Q 0.54 tolerated(1) benign(0) TCGA-CV-6003-01 5 26885757 26885757 G A CDH9 Silent p.L616L 0.35 TCGA-CV-6003-01 5 43616103 43616103 C G NNT Missense_Mutation p.Q179E 0.14 tolerated(0.21) probably_damaging(0.994) TCGA-CV-6003-01 6 100382357 100382357 G T MCHR2 Missense_Mutation p.F208L 0.66 tolerated(0.76) benign(0.007) TCGA-CV-6003-01 6 117715330 117715330 C T ROS1 Missense_Mutation p.E387K 0.08 tolerated(0.14) benign(0.001) TCGA-CV-6003-01 6 153019042 153019042 G A MYCT1 Missense_Mutation p.R2Q 0.63 tolerated_low_confidence(1) benign(0) TCGA-CV-6003-01 6 31864767 31864767 C T EHMT2 Splice_Site p.X15_splice 0.05 TCGA-CV-6003-01 7 123516945 123516945 G A HYAL4 Silent p.A394A 0.41 TCGA-CV-6003-01 7 143701141 143701141 C T OR6B1 Missense_Mutation p.P18S 0.38 tolerated(0.25) possibly_damaging(0.666) TCGA-CV-6003-01 7 29552210 29552210 G A CHN2 Missense_Mutation p.M422I 0.40 deleterious(0) benign(0.434) TCGA-CV-6003-01 7 5097370 5097370 G A RBAK-RBAKDN Silent p.P66P 0.18 TCGA-CV-6003-01 7 76826174 76826174 C T FGL2 Missense_Mutation p.G248R 0.40 deleterious(0) probably_damaging(0.988) TCGA-CV-6003-01 8 120859281 120859281 C T DSCC1 Missense_Mutation p.E176K 0.31 tolerated(0.07) benign(0.259) TCGA-CV-6003-01 8 95683890 95683890 G C ESRP1 Missense_Mutation p.L481F 0.17 tolerated(0.12) possibly_damaging(0.521) TCGA-CV-6003-01 9 113170491 113170491 G C SVEP1 Silent p.L2463L 0.24 TCGA-CV-6003-01 9 116859596 116859596 C T KIF12 Missense_Mutation p.E73K 0.09 tolerated(0.21) benign(0.072) TCGA-CV-6003-01 9 139749038 139749038 C T MAMDC4 Missense_Mutation p.R282C 0.36 tolerated(0.18) possibly_damaging(0.711) TCGA-CV-6003-01 9 20981650 20981650 G A FOCAD Missense_Mutation p.G1535R 0.22 tolerated(0.25) benign(0.048) TCGA-CV-6003-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.45 TCGA-CV-6003-01 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.36 TCGA-CV-6003-01 9 35450086 35450086 C A ATP8B5P RNA 0.24 TCGA-CV-6003-01 X 101396190 101396190 C T TCEAL6 Silent p.A38A 0.13 TCGA-CV-6003-01 X 109694331 109694332 AG - RGAG1 Frame_Shift_Del p.E163Dfs*25 0.12 TCGA-CV-6003-01 X 128696645 128696645 C G OCRL Missense_Mutation p.L376V 0.16 deleterious(0) probably_damaging(0.96) TCGA-CV-6003-01 X 129159271 129159271 G A BCORL1 Missense_Mutation p.R1332Q 0.47 probably_damaging(0.997) TCGA-CV-6003-01 X 138724819 138724819 C T MCF2 Intron 0.10 TCGA-CV-6003-01 X 140926143 140926143 T C MAGEC3 Silent p.S14S 0.05 TCGA-CV-6003-01 X 144337190 144337190 G A SPANXN1 Splice_Site p.X26_splice 0.16 TCGA-CV-6003-01 X 27840483 27840483 C A MAGEB10 3'UTR 0.34 TCGA-CV-6003-01 X 41401990 41401990 C G CASK Missense_Mutation p.K703N 0.10 tolerated(0.14) possibly_damaging(0.617) TCGA-CV-6003-01 X 47101692 47101692 G A USP11 Missense_Mutation p.R507H 0.24 tolerated(0.12) probably_damaging(0.973) TCGA-CV-6003-01 X 47774432 47774432 A T ZNF81 Missense_Mutation p.L129F 0.43 deleterious(0.05) possibly_damaging(0.66) TCGA-CV-6003-01 X 54476096 54476096 G A FGD1 Missense_Mutation p.S715F 0.09 deleterious(0.03) probably_damaging(0.986) TCGA-CV-6003-01 X 5821173 5821173 C T NLGN4X Missense_Mutation p.D516N 0.26 deleterious(0) probably_damaging(0.998) TCGA-CV-6003-01 X 73524500 73524500 C A ZCCHC13 Nonsense_Mutation p.C133* 0.29 TCGA-CV-6003-01 X 77267139 77267139 T G ATP7A Missense_Mutation p.L714V 0.28 deleterious(0.01) possibly_damaging(0.624) TCGA-CV-6003-01 X 79281158 79281158 T A TBX22 Missense_Mutation p.I172N 0.12 deleterious(0.01) benign(0.248) TCGA-CV-6003-01 X 91131788 91131788 C A PCDH11X Missense_Mutation p.N183K 0.26 tolerated(0.16) benign(0.297) TCGA-CV-6433-01 10 117823944 117823944 G A GFRA1 Silent p.L455L 0.22 TCGA-CV-6433-01 10 53564372 53564372 T A PRKG1 Missense_Mutation p.I207N 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-6433-01 11 55038432 55038432 G A TRIM48 3'UTR 0.23 TCGA-CV-6433-01 11 55371281 55371281 G A OR4C11 Missense_Mutation p.T190I 0.57 deleterious(0.03) benign(0.247) TCGA-CV-6433-01 11 67200832 67200832 C T RPS6KB2 Missense_Mutation p.R274W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-6433-01 14 20978941 20978957 AGAGCAACAAAGACTAT - RNASE10 Frame_Shift_Del p.Q104Pfs*2 0.23 TCGA-CV-6433-01 14 22392815 22392815 C T TRAV14DV4 Missense_Mutation p.A113V 0.47 TCGA-CV-6433-01 14 94046720 94046721 GT - UNC79 Frame_Shift_Del p.V710Gfs*9 0.25 TCGA-CV-6433-01 15 43900126 43900126 T C STRC Silent p.E1243E 0.23 TCGA-CV-6433-01 15 51981445 51981445 A G SCG3 Silent p.E190E 0.34 TCGA-CV-6433-01 16 64984710 64984710 G A CDH11 Silent p.G618G 0.24 TCGA-CV-6433-01 16 66974469 66974469 G A CES2 Silent p.A293A 0.33 TCGA-CV-6433-01 17 61601637 61601645 CCCAACACA - KCNH6 In_Frame_Del p.N73_P75del 0.32 TCGA-CV-6433-01 19 13004312 13004312 G A GCDH Missense_Mutation p.G117E 0.46 deleterious_low_confidence(0.03) probably_damaging(0.991) TCGA-CV-6433-01 19 18555654 18555654 T A ELL Nonsense_Mutation p.K592* 0.28 TCGA-CV-6433-01 19 19654650 19654659 CGCCAGCTCC - CILP2 Frame_Shift_Del p.S434Afs*21 0.66 TCGA-CV-6433-01 19 19654666 19654666 T G CILP2 Missense_Mutation p.C438G 0.43 deleterious(0) probably_damaging(0.999) TCGA-CV-6433-01 19 38979817 38979817 G A RYR1 Missense_Mutation p.V1850M 0.59 benign(0.147) TCGA-CV-6433-01 19 45716536 45716536 G A EXOC3L2 Missense_Mutation p.R341W 0.24 deleterious(0) probably_damaging(0.996) TCGA-CV-6433-01 19 52887785 52887785 C T ZNF880 Missense_Mutation p.H318Y 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-CV-6433-01 19 57176313 57176313 G A ZNF835 Missense_Mutation p.A85V 0.41 tolerated(0.47) benign(0.029) TCGA-CV-6433-01 19 9088749 9088749 G C MUC16 Silent p.L1022L 0.05 TCGA-CV-6433-01 1 111490996 111490996 G A LRIF1 Missense_Mutation p.A632V 0.32 tolerated(0.42) possibly_damaging(0.866) TCGA-CV-6433-01 1 156563322 156563322 C T APOA1BP Silent p.P213P 0.10 TCGA-CV-6433-01 1 171756952 171756952 C A METTL13 Missense_Mutation p.D397E 0.08 tolerated(1) benign(0.001) TCGA-CV-6433-01 1 179460728 179460728 T G AXDND1 Missense_Mutation p.M716R 0.33 deleterious(0) benign(0.003) TCGA-CV-6433-01 1 201185880 201185880 G A IGFN1 Silent p.E3198E 0.39 TCGA-CV-6433-01 1 236924422 236924422 C T ACTN2 Silent p.T825T 0.44 TCGA-CV-6433-01 1 27874105 27874105 G C AHDC1 Missense_Mutation p.P1508A 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-CV-6433-01 20 30897975 30897975 G T KIF3B Missense_Mutation p.R132L 0.05 deleterious(0.03) benign(0.011) TCGA-CV-6433-01 2 192922459 192922459 G A TMEFF2 Missense_Mutation p.T161I 0.34 tolerated(0.06) benign(0.044) TCGA-CV-6433-01 2 9515038 9515038 G A ASAP2 Missense_Mutation p.D571N 0.36 deleterious(0.01) possibly_damaging(0.903) TCGA-CV-6433-01 3 45776796 45776796 G A SACM1L Missense_Mutation p.M390I 0.25 tolerated(1) benign(0.019) TCGA-CV-6433-01 3 48699612 48699612 A T CELSR3 Missense_Mutation p.S152R 0.33 tolerated_low_confidence(0.06) benign(0.043) TCGA-CV-6433-01 3 48699613 48699613 C T CELSR3 Missense_Mutation p.S152N 0.34 tolerated_low_confidence(0.09) benign(0.001) TCGA-CV-6433-01 4 144467996 144467996 A G SMARCA5 Missense_Mutation p.D863G 0.32 deleterious(0.04) benign(0.007) TCGA-CV-6433-01 4 154249705 154249705 C T TRIM2 Silent p.F682F 0.35 TCGA-CV-6433-01 4 27003875 27003875 C T STIM2 Missense_Mutation p.T221I 0.07 tolerated(0.5) benign(0.003) TCGA-CV-6433-01 4 48169913 48169913 C T TEC Missense_Mutation p.V185I 0.06 tolerated(0.47) benign(0.035) TCGA-CV-6433-01 4 68610290 68610290 G A GNRHR Silent p.P246P 0.42 TCGA-CV-6433-01 4 73963791 73963791 T G ANKRD17 Missense_Mutation p.K1674Q 0.36 benign(0) TCGA-CV-6433-01 5 140788902 140788902 G C PCDHGB6 Missense_Mutation p.G378A 0.47 tolerated(0.12) benign(0.045) TCGA-CV-6433-01 5 151784417 151784417 G T NMUR2 Missense_Mutation p.S86R 0.32 deleterious(0) probably_damaging(1) TCGA-CV-6433-01 6 116288718 116288718 T C FRK Silent p.K265K 0.06 TCGA-CV-6433-01 6 145093097 145093097 A G UTRN Silent p.Q2850Q 0.27 TCGA-CV-6433-01 6 157502235 157502235 C G ARID1B Missense_Mutation p.L1090V 0.20 possibly_damaging(0.739) TCGA-CV-6433-01 6 33690555 33690555 T C IP6K3 Missense_Mutation p.Y392C 0.27 deleterious(0) probably_damaging(0.995) TCGA-CV-6433-01 6 84862866 84862866 C A KIAA1009 Missense_Mutation p.E1009D 0.25 deleterious(0.02) benign(0.126) TCGA-CV-6433-01 6 87968193 87968193 A G ZNF292 Missense_Mutation p.R1616G 0.22 tolerated_low_confidence(0.44) benign(0.002) TCGA-CV-6433-01 7 100677648 100677648 C A MUC17 Missense_Mutation p.P984Q 0.35 probably_damaging(0.997) TCGA-CV-6433-01 8 110587412 110587412 C T SYBU Missense_Mutation p.R572H 0.34 tolerated(0.18) benign(0.005) TCGA-CV-6433-01 8 113933928 113933928 C T CSMD3 Missense_Mutation p.A521T 0.37 deleterious(0.01) benign(0.15) TCGA-CV-6433-01 8 144295190 144295190 G T GPIHBP1 Silent p.R16R 0.11 TCGA-CV-6433-01 8 17478590 17478590 G T PDGFRL Missense_Mutation p.L128F 0.27 deleterious(0.02) probably_damaging(1) TCGA-CV-6433-01 8 22107661 22107661 G A POLR3D Missense_Mutation p.R332H 0.06 deleterious(0) possibly_damaging(0.473) TCGA-CV-6433-01 8 27327422 27327422 C T CHRNA2 Silent p.P50P 0.05 TCGA-CV-6433-01 8 67929968 67929968 G T PPP1R42 Silent p.T5T 0.18 TCGA-CV-6433-01 9 100222899 100222899 A - TDRD7 Frame_Shift_Del p.E433Sfs*5 0.16 TCGA-CV-6433-01 9 139974547 139974547 C T UAP1L1 Silent p.N377N 0.46 TCGA-CV-6433-01 9 87285579 87285579 G A NTRK2 5'UTR 0.20 TCGA-CV-6433-01 X 132826430 132826430 G A GPC3 Missense_Mutation p.T443I 0.72 tolerated(0.43) benign(0.148) TCGA-CV-6433-01 X 140994302 140994302 C T MAGEC1 Missense_Mutation p.S371F 0.22 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-CV-6433-01 X 35938046 35938046 C T CXorf22 Missense_Mutation p.P44S 0.50 deleterious(0.01) probably_damaging(0.987) TCGA-CV-6433-01 X 70613166 70613166 C T TAF1 Missense_Mutation p.R1043C 0.69 deleterious(0) probably_damaging(0.959) TCGA-CV-6436-01 10 122622272 122622272 C T WDR11 Silent p.F184F 0.22 TCGA-CV-6436-01 10 28413008 28413008 G A MPP7 Silent p.N189N 0.09 TCGA-CV-6436-01 11 11986065 11986065 C T DKK3 Silent p.A333A 0.11 TCGA-CV-6436-01 11 27679288 27679288 G C BDNF 3'UTR 0.45 TCGA-CV-6436-01 11 44956362 44956362 G A TP53I11 3'UTR 0.18 TCGA-CV-6436-01 11 47707594 47707594 C T AGBL2 Missense_Mutation p.E547K 0.26 tolerated(0.07) benign(0.208) TCGA-CV-6436-01 11 47833636 47833636 A G NUP160 Silent p.L741L 0.10 TCGA-CV-6436-01 11 534288 534288 C T HRAS Missense_Mutation p.G12D 0.41 deleterious(0) possibly_damaging(0.56) TCGA-CV-6436-01 11 55032498 55032498 A G TRIM48 Missense_Mutation p.Y56C 0.19 tolerated(0.26) benign(0.01) TCGA-CV-6436-01 11 55322467 55322467 C A OR4C15 Missense_Mutation p.H229N 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.462) TCGA-CV-6436-01 11 64544069 64544069 G A SF1 Missense_Mutation p.R146C 0.10 deleterious(0.02) possibly_damaging(0.566) TCGA-CV-6436-01 11 65063612 65063612 G T POLA2 Intron 0.18 TCGA-CV-6436-01 11 8772184 8772184 G A ST5 Missense_Mutation p.R22W 0.38 deleterious_low_confidence(0) benign(0.165) TCGA-CV-6436-01 12 105597508 105597508 A G APPL2 Missense_Mutation p.L232S 0.19 deleterious(0) possibly_damaging(0.712) TCGA-CV-6436-01 12 112167625 112167625 G T ACAD10 Missense_Mutation p.R451L 0.26 deleterious(0) benign(0.092) TCGA-CV-6436-01 12 113599136 113599136 T G DDX54 Missense_Mutation p.E784D 0.16 tolerated(0.44) benign(0.007) TCGA-CV-6436-01 12 117914339 117914339 G A KSR2 Missense_Mutation p.R838C 0.47 deleterious(0.02) benign(0.089) TCGA-CV-6436-01 12 12022544 12022544 G C ETV6 Missense_Mutation p.R217T 0.16 tolerated(0.27) benign(0.001) TCGA-CV-6436-01 12 31613307 31613307 G A DENND5B Missense_Mutation p.R305C 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-6436-01 12 99007411 99007411 C T IKBIP Silent p.E335E 0.14 TCGA-CV-6436-01 13 42044676 42044676 G T RGCC 3'UTR 0.19 TCGA-CV-6436-01 13 61084005 61084005 C G TDRD3 Missense_Mutation p.L323V 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-6436-01 14 106110981 106110981 G A IGHG2 Silent p.G49G 0.24 TCGA-CV-6436-01 14 70924430 70924430 C T ADAM21 Missense_Mutation p.H72Y 0.12 tolerated(0.06) benign(0.107) TCGA-CV-6436-01 14 93172970 93172970 C T LGMN Missense_Mutation p.R350H 0.29 tolerated(0.21) benign(0.003) TCGA-CV-6436-01 14 94674875 94674875 C T PPP4R4 Missense_Mutation p.T89M 0.25 deleterious(0.01) probably_damaging(0.978) TCGA-CV-6436-01 15 25961901 25961901 C T ATP10A Silent p.T584T 0.12 TCGA-CV-6436-01 15 74425583 74425583 C T ISLR2 Missense_Mutation p.A163V 0.19 tolerated(0.39) benign(0.155) TCGA-CV-6436-01 15 83331629 83331629 G A AP3B2 Missense_Mutation p.R865W 0.16 deleterious(0) possibly_damaging(0.689) TCGA-CV-6436-01 16 10032166 10032166 C T GRIN2A Silent p.L219L 0.14 TCGA-CV-6436-01 16 1961723 1961737 GCGGGGACGGCTGCC - HS3ST6 In_Frame_Del p.G264_R268del 0.30 TCGA-CV-6436-01 16 20410538 20410538 A G PDILT Missense_Mutation p.S29P 0.19 tolerated(0.37) benign(0.001) TCGA-CV-6436-01 16 49430551 49430551 C T C16orf78 Silent p.T204T 0.12 TCGA-CV-6436-01 17 40735595 40735595 C T FAM134C Missense_Mutation p.R244H 0.27 tolerated(0.15) benign(0.002) TCGA-CV-6436-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.26 tolerated(0.13) possibly_damaging(0.631) TCGA-CV-6436-01 17 7673916 7673916 C T DNAH2 Silent p.L1380L 0.18 TCGA-CV-6436-01 17 77807811 77807811 C T CBX4 Missense_Mutation p.D544N 0.25 deleterious(0) probably_damaging(0.959) TCGA-CV-6436-01 18 44260048 44260048 C T ST8SIA5 Missense_Mutation p.R363Q 0.23 possibly_damaging(0.71) TCGA-CV-6436-01 19 14266090 14266090 T C LPHN1 Intron 0.11 TCGA-CV-6436-01 19 2271954 2271954 G A OAZ1 Splice_Site p.X155_splice 0.28 TCGA-CV-6436-01 19 37039185 37039185 C T ZNF529 Missense_Mutation p.G92E 0.21 tolerated(1) benign(0.01) TCGA-CV-6436-01 19 40321135 40321137 CTC - DYRK1B In_Frame_Del p.E84del 0.26 TCGA-CV-6436-01 19 46914919 46914919 G C CCDC8 Missense_Mutation p.H383Q 0.23 benign(0) TCGA-CV-6436-01 19 52519599 52519599 G A ZNF614 Nonsense_Mutation p.Q418* 0.21 TCGA-CV-6436-01 19 5772836 5772836 G T CATSPERD Nonsense_Mutation p.E601* 0.24 TCGA-CV-6436-01 19 9000504 9000504 C T MUC16 Missense_Mutation p.E13494K 0.18 possibly_damaging(0.661) TCGA-CV-6436-01 1 151740703 151740703 G A OAZ3 Missense_Mutation p.R113Q 0.22 deleterious(0.02) benign(0.141) TCGA-CV-6436-01 1 152281685 152281685 C T FLG Missense_Mutation p.D1893N 0.19 possibly_damaging(0.831) TCGA-CV-6436-01 1 204210594 204210594 G C PLEKHA6 Missense_Mutation p.P773R 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6436-01 1 33150041 33150041 C T RBBP4 3'UTR 0.20 TCGA-CV-6436-01 1 3428684 3428684 C T MEGF6 Missense_Mutation p.E288K 0.23 deleterious(0) probably_damaging(0.998) TCGA-CV-6436-01 1 92161270 92161270 G A TGFBR3 Missense_Mutation p.A799V 0.31 tolerated(0.15) possibly_damaging(0.831) TCGA-CV-6436-01 20 2969023 2969023 C T PTPRA Missense_Mutation p.T214I 0.20 tolerated(0.11) probably_damaging(0.998) TCGA-CV-6436-01 20 61511734 61511734 G A DIDO1 Silent p.A1858A 0.19 TCGA-CV-6436-01 20 62046415 62046415 C T KCNQ2 Missense_Mutation p.G456R 0.15 tolerated(0.1) possibly_damaging(0.594) TCGA-CV-6436-01 22 19960526 19960526 G A ARVCF Silent p.H824H 0.29 TCGA-CV-6436-01 22 32614659 32614659 C T SLC5A4 Missense_Mutation p.G608S 0.14 deleterious(0.01) probably_damaging(0.933) TCGA-CV-6436-01 22 38121554 38121554 C T TRIOBP Silent p.P997P 0.16 TCGA-CV-6436-01 22 41753277 41753277 G C ZC3H7B Silent p.L926L 0.12 TCGA-CV-6436-01 2 11802096 11802096 G A NTSR2 Missense_Mutation p.L299F 0.16 deleterious(0.02) probably_damaging(0.949) TCGA-CV-6436-01 2 202131241 202131241 G A CASP8 Missense_Mutation p.G70E 0.23 tolerated(0.29) possibly_damaging(0.637) TCGA-CV-6436-01 2 95481176 95481176 G C ANKRD20A8P RNA 0.13 TCGA-CV-6436-01 2 98986432 98986432 C T CNGA3 5'UTR 0.20 TCGA-CV-6436-01 3 123665761 123665761 T C CCDC14 Missense_Mutation p.T371A 0.21 tolerated(0.46) possibly_damaging(0.801) TCGA-CV-6436-01 3 178916944 178916944 A G PIK3CA Missense_Mutation p.K111E 0.26 deleterious(0.03) probably_damaging(0.983) TCGA-CV-6436-01 3 184039612 184039612 G A EIF4G1 Missense_Mutation p.D421N 0.20 tolerated(0.15) probably_damaging(0.986) TCGA-CV-6436-01 3 42799629 42799629 C A CCDC13 Missense_Mutation p.S70I 0.16 tolerated(0.25) benign(0.009) TCGA-CV-6436-01 3 8609125 8609125 G A LMCD1 Splice_Site p.X314_splice 0.15 TCGA-CV-6436-01 3 8609159 8609159 G A LMCD1 Missense_Mutation p.D325N 0.16 tolerated(0.45) benign(0.312) TCGA-CV-6436-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.23 deleterious(0) probably_damaging(1) TCGA-CV-6436-01 4 6107523 6107523 G A JAKMIP1 Missense_Mutation p.R101C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-6436-01 4 88035995 88035995 G A AFF1 Silent p.V670V 0.18 TCGA-CV-6436-01 4 88312141 88312141 G T HSD17B11 Missense_Mutation p.P28T 0.25 deleterious(0) possibly_damaging(0.901) TCGA-CV-6436-01 5 137593489 137593489 G A GFRA3 Silent p.A208A 0.23 TCGA-CV-6436-01 5 137762666 137762666 C T KDM3B Nonsense_Mutation p.R1472* 0.21 TCGA-CV-6436-01 5 138718971 138718971 G A SLC23A1 5'UTR 0.12 TCGA-CV-6436-01 5 140220964 140220964 C T PCDHA8 Missense_Mutation p.L20F 0.13 tolerated_low_confidence(0.11) benign(0.02) TCGA-CV-6436-01 5 140553798 140553798 G A PCDHB7 Missense_Mutation p.R461H 0.19 tolerated_low_confidence(0.09) benign(0.012) TCGA-CV-6436-01 5 177151088 177151088 C A FAM153A 3'UTR 0.12 TCGA-CV-6436-01 6 10877388 10877388 G A GCM2 Missense_Mutation p.R110W 0.17 deleterious(0) probably_damaging(0.993) TCGA-CV-6436-01 6 123332281 123332281 C T CLVS2 Nonsense_Mutation p.R181* 0.14 TCGA-CV-6436-01 6 145021235 145021235 G A UTRN Silent p.E2555E 0.18 TCGA-CV-6436-01 6 26158692 26158692 G C HIST1H2BD Missense_Mutation p.V99L 0.16 tolerated_low_confidence(0.05) benign(0.005) TCGA-CV-6436-01 6 27100520 27100520 G T HIST1H2BJ Missense_Mutation p.P4T 0.13 tolerated_low_confidence(0.17) unknown(0) TCGA-CV-6436-01 6 30867169 30867169 C T DDR1 3'UTR 0.23 TCGA-CV-6436-01 6 51907774 51907774 G A PKHD1 Missense_Mutation p.R994W 0.21 tolerated(0.06) benign(0.022) TCGA-CV-6436-01 6 75950913 75950913 C T COX7A2 Silent p.P61P 0.18 TCGA-CV-6436-01 7 104801043 104801043 C A SRPK2 Nonsense_Mutation p.E178* 0.23 TCGA-CV-6436-01 7 149461821 149461821 C T ZNF467 Silent p.P590P 0.21 TCGA-CV-6436-01 7 77469555 77469555 G T PHTF2 5'UTR 0.24 TCGA-CV-6436-01 7 89915651 89915651 G T C7orf63 Nonsense_Mutation p.E532* 0.16 TCGA-CV-6436-01 8 142367698 142367698 C T GPR20 Missense_Mutation p.R109H 0.26 deleterious(0) probably_damaging(1) TCGA-CV-6436-01 8 67771822 67771822 T G SGK3 3'UTR 0.31 TCGA-CV-6436-01 9 116930231 116930231 C T COL27A1 Silent p.P132P 0.27 TCGA-CV-6436-01 9 135277682 135277682 G A TTF1 Missense_Mutation p.A176V 0.33 deleterious(0.01) benign(0.009) TCGA-CV-6436-01 9 137328348 137328348 G A RXRA Missense_Mutation p.R426H 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-6436-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.28 TCGA-CV-6436-01 9 79930245 79930245 G TT VPS13A Frame_Shift_Ins p.V1497Ffs*3 0.28 TCGA-CV-6436-01 9 86905135 86905135 G A SLC28A3 Silent p.H361H 0.21 TCGA-CV-6436-01 X 117575441 117575441 C G WDR44 Missense_Mutation p.I695M 0.44 deleterious(0) probably_damaging(0.995) TCGA-CV-6436-01 X 77126359 77126359 G C MAGT1 Missense_Mutation p.N144K 0.36 tolerated(0.19) possibly_damaging(0.691) TCGA-CV-6441-01 10 120094625 120094625 C A FAM204A Splice_Site p.X151_splice 0.12 TCGA-CV-6441-01 10 126490394 126490394 C A FAM175B 5'UTR 0.17 TCGA-CV-6441-01 10 134628237 134628237 C A TTC40 Missense_Mutation p.R2401L 0.38 deleterious(0) probably_damaging(0.998) TCGA-CV-6441-01 10 135020757 135020757 C T KNDC1 Silent p.L1232L 0.16 TCGA-CV-6441-01 10 17147564 17147564 A T CUBN Silent p.P374P 0.39 TCGA-CV-6441-01 10 17278348 17278348 G A VIM Silent p.L443L 0.35 TCGA-CV-6441-01 10 25284722 25284722 C T ENKUR Silent p.Q100Q 0.21 TCGA-CV-6441-01 10 329222 329222 A - DIP2C Frame_Shift_Del p.D1428Efs*13 0.11 TCGA-CV-6441-01 10 44052584 44052584 C G ZNF239 Missense_Mutation p.G315A 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 10 64968896 64968896 G T JMJD1C Missense_Mutation p.P932T 0.57 deleterious(0.05) possibly_damaging(0.855) TCGA-CV-6441-01 10 79737229 79737229 C G POLR3A 3'UTR 0.16 TCGA-CV-6441-01 10 79764570 79764570 C T POLR3A Silent p.L717L 0.16 TCGA-CV-6441-01 10 88428385 88428385 G C LDB3 Intron 0.16 TCGA-CV-6441-01 10 92508597 92508597 G A HTR7 Silent p.L432L 0.29 TCGA-CV-6441-01 10 92508598 92508598 C A HTR7 Silent p.V431V 0.28 TCGA-CV-6441-01 10 95892095 95892095 C G PLCE1 Silent p.L457L 0.50 TCGA-CV-6441-01 11 123601372 123601372 C T ZNF202 Silent p.L75L 0.26 TCGA-CV-6441-01 11 126276890 126276890 G A ST3GAL4 Missense_Mutation p.E52K 0.22 tolerated(0.75) benign(0.024) TCGA-CV-6441-01 11 133790784 133790784 G C IGSF9B Missense_Mutation p.R946G 0.35 deleterious_low_confidence(0) benign(0.148) TCGA-CV-6441-01 11 2683116 2683116 C T KCNQ1 Intron 0.12 TCGA-CV-6441-01 11 31625408 31625408 T G ELP4 Missense_Mutation p.F203V 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-CV-6441-01 11 4944942 4944942 C T OR51G1 Missense_Mutation p.G210S 0.22 deleterious(0.01) probably_damaging(0.956) TCGA-CV-6441-01 11 5566615 5566615 C G OR52H1 Missense_Mutation p.V47L 0.20 tolerated(1) benign(0.001) TCGA-CV-6441-01 11 55872567 55872567 G A OR8H2 Missense_Mutation p.G17R 0.19 deleterious(0.01) probably_damaging(1) TCGA-CV-6441-01 11 57100270 57100270 G A SSRP1 Silent p.I199I 0.20 TCGA-CV-6441-01 11 60689394 60689394 G C TMEM109 Silent p.L163L 0.21 TCGA-CV-6441-01 11 64645866 64645866 C A EHD1 Missense_Mutation p.G24V 0.48 deleterious(0) benign(0.119) TCGA-CV-6441-01 11 65268382 65268383 GG - MALAT1 RNA 0.12 TCGA-CV-6441-01 11 66272197 66272197 C T DPP3 Missense_Mutation p.R665C 0.19 deleterious(0) possibly_damaging(0.542) TCGA-CV-6441-01 11 69466006 69466006 G C CCND1 Missense_Mutation p.D282H 0.67 deleterious(0) probably_damaging(0.969) TCGA-CV-6441-01 12 112097072 112097072 C T BRAP Silent p.E350E 0.11 TCGA-CV-6441-01 12 122413157 122413157 G A WDR66 Missense_Mutation p.E927K 0.21 deleterious(0) possibly_damaging(0.703) TCGA-CV-6441-01 12 124812114 124812114 T C NCOR2 Missense_Mutation p.I2342V 0.41 probably_damaging(0.997) TCGA-CV-6441-01 12 133732548 133732548 A T ZNF10 Missense_Mutation p.K239I 0.33 deleterious(0.03) benign(0.008) TCGA-CV-6441-01 12 32890803 32890803 C G DNM1L Missense_Mutation p.S534C 0.20 deleterious(0.04) benign(0.155) TCGA-CV-6441-01 12 4643433 4643433 C G C12orf4 Missense_Mutation p.E72Q 0.26 tolerated(0.31) benign(0.301) TCGA-CV-6441-01 12 49433388 49433388 G A KMT2D Nonsense_Mutation p.R2687* 0.34 TCGA-CV-6441-01 12 50367243 50367243 C G AQP6 Missense_Mutation p.S96C 0.25 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 12 52884660 52884660 C T KRT6A Silent p.L298L 0.12 TCGA-CV-6441-01 12 53608326 53608338 ATAGCTGTCAGGT - RARG Frame_Shift_Del p.P177Sfs*2 0.22 TCGA-CV-6441-01 12 54635514 54635514 G C CBX5 3'UTR 0.22 TCGA-CV-6441-01 12 55945429 55945429 T C OR6C4 Missense_Mutation p.I140T 0.11 tolerated_low_confidence(0.96) benign(0.003) TCGA-CV-6441-01 12 64055144 64055144 G A DPY19L2 Missense_Mutation p.R190C 0.23 deleterious(0) probably_damaging(0.991) TCGA-CV-6441-01 12 69042549 69042549 A - RAP1B Frame_Shift_Del p.K16Sfs*4 0.13 TCGA-CV-6441-01 12 9161618 9161618 G A KLRG1 Silent p.L135L 0.19 TCGA-CV-6441-01 12 95397464 95397464 C G NDUFA12 5'UTR 0.18 TCGA-CV-6441-01 12 99640336 99640336 C A ANKS1B Missense_Mutation p.G688V 0.17 tolerated(0.07) benign(0.165) TCGA-CV-6441-01 13 113439521 113439521 G C ATP11A Missense_Mutation p.E38Q 0.18 deleterious(0.02) benign(0.033) TCGA-CV-6441-01 13 113464990 113464990 C A ATP11A Missense_Mutation p.H131N 0.12 tolerated(0.31) benign(0.002) TCGA-CV-6441-01 13 36050182 36050182 G T MAB21L1 Silent p.R32R 0.20 TCGA-CV-6441-01 13 86369500 86369500 C A SLITRK6 Missense_Mutation p.D382Y 0.41 deleterious(0) probably_damaging(0.957) TCGA-CV-6441-01 14 105412107 105412107 G C AHNAK2 Silent p.P3227P 0.08 TCGA-CV-6441-01 14 105414735 105414735 G T AHNAK2 Missense_Mutation p.D2351E 0.17 benign(0.019) TCGA-CV-6441-01 14 22476277 22476279 TCG - TRAV19 In_Frame_Del p.R71del 0.20 TCGA-CV-6441-01 14 47426600 47426600 C T MDGA2 Missense_Mutation p.G689E 0.32 deleterious(0.04) probably_damaging(0.967) TCGA-CV-6441-01 14 52535538 52535538 C A NID2 Missense_Mutation p.V59L 0.38 tolerated(0.67) benign(0.004) TCGA-CV-6441-01 14 75485569 75485569 G T MLH3 Missense_Mutation p.P1402Q 0.39 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 15 101445832 101445832 C G ALDH1A3 Silent p.L391L 0.13 TCGA-CV-6441-01 15 28369180 28369180 T A HERC2 Intron 0.71 TCGA-CV-6441-01 15 34538068 34538068 C A SLC12A6 Missense_Mutation p.K550N 0.35 deleterious(0) probably_damaging(0.976) TCGA-CV-6441-01 15 48892392 48892392 C T FBN1 Missense_Mutation p.C129Y 0.71 probably_damaging(0.991) TCGA-CV-6441-01 15 52903845 52903845 C T FAM214A Missense_Mutation p.D111N 0.25 tolerated(0.09) benign(0.013) TCGA-CV-6441-01 15 54914565 54914565 T C UNC13C Silent p.H2049H 0.77 TCGA-CV-6441-01 15 65490839 65490839 T C CILP Silent p.E595E 0.35 TCGA-CV-6441-01 15 74922109 74922109 T G CLK3 Nonsense_Mutation p.L601* 0.79 TCGA-CV-6441-01 15 96875642 96875642 T G NR2F2 Missense_Mutation p.F103C 0.28 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 16 11374754 11374754 T C PRM1 3'UTR 0.25 TCGA-CV-6441-01 16 2273707 2273707 G A E4F1 Silent p.A31A 0.62 TCGA-CV-6441-01 16 28844640 28844640 C T ATXN2L Silent p.I640I 0.29 TCGA-CV-6441-01 16 30100461 30100461 C G TBX6 Missense_Mutation p.D142H 0.19 deleterious(0) probably_damaging(0.995) TCGA-CV-6441-01 16 30773817 30773817 C T RNF40 5'UTR 0.25 TCGA-CV-6441-01 16 57973358 57973358 C T CNGB1 Missense_Mutation p.E450K 0.21 tolerated(0.48) benign(0.045) TCGA-CV-6441-01 16 81061821 81061821 G A CENPN Missense_Mutation p.E286K 0.18 tolerated(0.07) benign(0.158) TCGA-CV-6441-01 16 81183305 81183305 C G PKD1L2 RNA 0.21 TCGA-CV-6441-01 17 10433049 10433049 G T MYH2 Missense_Mutation p.N983K 0.51 deleterious(0) probably_damaging(0.999) TCGA-CV-6441-01 17 16068406 16068406 G C NCOR1 Missense_Mutation p.Q169E 0.10 possibly_damaging(0.766) TCGA-CV-6441-01 17 16068472 16068472 G A NCOR1 Missense_Mutation p.P147S 0.10 benign(0) TCGA-CV-6441-01 17 18062990 18062990 G A MYO15A Silent p.L3100L 0.22 TCGA-CV-6441-01 17 30688523 30688523 C T ZNF207 Silent p.C196C 0.08 TCGA-CV-6441-01 17 37627593 37627593 C G CDK12 Missense_Mutation p.S503C 0.18 benign(0.271) TCGA-CV-6441-01 17 39412307 39412307 G C KRTAP9-9 3'UTR 0.24 TCGA-CV-6441-01 17 43159057 43159057 G C NMT1 Missense_Mutation p.K59N 0.12 tolerated(0.12) possibly_damaging(0.48) TCGA-CV-6441-01 17 44408913 44408913 G A LRRC37A Missense_Mutation p.E1424K 0.30 tolerated(0.17) benign(0.316) TCGA-CV-6441-01 17 47210374 47210374 C G B4GALNT2 5'UTR 0.42 TCGA-CV-6441-01 17 57768080 57768080 C G CLTC Intron 0.12 TCGA-CV-6441-01 17 67287394 67287394 C T ABCA5 Silent p.L523L 0.20 TCGA-CV-6441-01 17 72348997 72348997 C G KIF19 Nonsense_Mutation p.S673* 0.16 TCGA-CV-6441-01 17 76187113 76187113 G C AFMID Missense_Mutation p.L42F 0.29 deleterious(0.01) possibly_damaging(0.783) TCGA-CV-6441-01 17 7736073 7736073 C T DNAH2 Silent p.N4301N 0.80 TCGA-CV-6441-01 17 78032313 78032313 A G CCDC40 Missense_Mutation p.M394V 0.17 tolerated(1) benign(0.004) TCGA-CV-6441-01 17 79534533 79534533 C A NPLOC4 Missense_Mutation p.L492F 0.38 tolerated(0.08) probably_damaging(0.971) TCGA-CV-6441-01 17 79667588 79667588 C T HGS Silent p.P658P 0.88 TCGA-CV-6441-01 17 79847182 79847182 C T ALYREF Silent p.T138T 0.77 TCGA-CV-6441-01 18 29450923 29450923 T C TRAPPC8 Silent p.S741S 0.47 TCGA-CV-6441-01 18 47812911 47812911 C G CXXC1 Missense_Mutation p.R74T 0.32 deleterious(0.01) benign(0.127) TCGA-CV-6441-01 18 54285302 54285302 T G TXNL1 Missense_Mutation p.D142A 0.35 deleterious(0) possibly_damaging(0.822) TCGA-CV-6441-01 18 74154474 74154474 G A ZNF516 Silent p.C179C 0.20 TCGA-CV-6441-01 19 10221801 10221801 G A PPAN Intron 0.36 TCGA-CV-6441-01 19 11233896 11233896 A G LDLR Silent p.L729L 0.21 TCGA-CV-6441-01 19 11531413 11531413 C A CCDC151 3'UTR 0.62 TCGA-CV-6441-01 19 15132719 15132719 G A CCDC105 Silent p.A413A 0.63 TCGA-CV-6441-01 19 15164426 15164426 G C CASP14 Missense_Mutation p.R54T 0.20 tolerated(1) benign(0.038) TCGA-CV-6441-01 19 17086829 17086829 G A CPAMD8 Missense_Mutation p.R678W 0.50 deleterious(0) possibly_damaging(0.84) TCGA-CV-6441-01 19 19431288 19431288 G A SUGP1 Silent p.D6D 0.38 TCGA-CV-6441-01 19 22271115 22271115 T A ZNF257 Missense_Mutation p.L188Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-CV-6441-01 19 3192652 3192652 C T NCLN Silent p.V123V 0.30 TCGA-CV-6441-01 19 3964692 3964692 G C DAPK3 Silent p.L120L 0.29 TCGA-CV-6441-01 19 40582009 40582009 C G ZNF780A Missense_Mutation p.E115Q 0.67 tolerated(0.13) benign(0.002) TCGA-CV-6441-01 19 42557775 42557775 G A GRIK5 Silent p.T416T 0.24 TCGA-CV-6441-01 19 43269720 43269720 G C PSG8 Nonsense_Mutation p.S5* 0.22 TCGA-CV-6441-01 19 45783855 45783855 C T MARK4 Missense_Mutation p.P380L 0.20 tolerated(0.13) probably_damaging(0.994) TCGA-CV-6441-01 19 47575952 47575952 C T ZC3H4 Missense_Mutation p.E487K 0.35 unknown(0) TCGA-CV-6441-01 19 50496192 50496192 G C VRK3 Missense_Mutation p.F296L 0.25 deleterious(0.01) possibly_damaging(0.84) TCGA-CV-6441-01 19 51649129 51649129 A C SIGLEC7 Missense_Mutation p.N260H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-6441-01 19 55378031 55378031 G A KIR3DL2 Missense_Mutation p.V405I 0.29 tolerated(0.56) benign(0.252) TCGA-CV-6441-01 19 56413454 56413454 G C NLRP13 Silent p.V912V 0.18 TCGA-CV-6441-01 19 56481960 56481960 A C NLRP8 Missense_Mutation p.N811T 0.12 tolerated(0.59) benign(0.095) TCGA-CV-6441-01 19 9800941 9800941 C T ZNF812 Missense_Mutation p.R413K 0.25 deleterious(0.01) benign(0) TCGA-CV-6441-01 1 103480096 103480096 G A COL11A1 Nonsense_Mutation p.Q515* 0.15 TCGA-CV-6441-01 1 107691398 107691398 G A NTNG1 Silent p.L61L 0.18 TCGA-CV-6441-01 1 110086037 110086037 C G GPR61 Silent p.L131L 0.20 TCGA-CV-6441-01 1 118693935 118693935 G C SPAG17 Missense_Mutation p.L49V 0.18 tolerated(0.18) possibly_damaging(0.7) TCGA-CV-6441-01 1 145301812 145301812 G A NBPF10 Missense_Mutation p.E361K 0.12 benign(0.193) TCGA-CV-6441-01 1 145536002 145536002 G C ITGA10 Missense_Mutation p.M698I 0.22 tolerated(1) benign(0.001) TCGA-CV-6441-01 1 151552206 151552206 G C TUFT1 Missense_Mutation p.E336Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-6441-01 1 154573540 154573540 C T ADAR Silent p.Q526Q 0.15 TCGA-CV-6441-01 1 156038115 156038115 G T RAB25 Missense_Mutation p.Q98H 0.47 tolerated_low_confidence(0.12) benign(0.044) TCGA-CV-6441-01 1 158300658 158300658 C G CD1B Missense_Mutation p.E86Q 0.20 tolerated(0.41) benign(0.003) TCGA-CV-6441-01 1 158736156 158736156 G T OR6N1 Missense_Mutation p.S106Y 0.25 deleterious(0) probably_damaging(0.957) TCGA-CV-6441-01 1 159174731 159174731 G A DARC 5'Flank 0.32 TCGA-CV-6441-01 1 159174732 159174732 C A DARC 5'Flank 0.31 TCGA-CV-6441-01 1 161180556 161180556 C G NDUFS2 Intron 0.35 TCGA-CV-6441-01 1 168059864 168059864 C T GPR161 Missense_Mutation p.G401E 0.27 tolerated(0.13) benign(0.011) TCGA-CV-6441-01 1 175116116 175116116 T C TNN Missense_Mutation p.V1270A 0.24 deleterious(0.03) possibly_damaging(0.78) TCGA-CV-6441-01 1 179561846 179561846 G C TDRD5 Missense_Mutation p.E32D 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-CV-6441-01 1 182908567 182908567 C T SHCBP1L Intron 0.41 TCGA-CV-6441-01 1 200377873 200377873 G A ZNF281 Nonsense_Mutation p.Q321* 0.41 TCGA-CV-6441-01 1 202287786 202287786 C G LGR6 Silent p.L785L 0.13 TCGA-CV-6441-01 1 204124994 204124994 A G REN Missense_Mutation p.L338P 0.17 deleterious(0) probably_damaging(0.994) TCGA-CV-6441-01 1 20474959 20474959 G T PLA2G2F 3'UTR 0.43 TCGA-CV-6441-01 1 205589519 205589519 C G ELK4 Missense_Mutation p.E219Q 0.22 tolerated(0.41) benign(0.005) TCGA-CV-6441-01 1 206760273 206760273 A G RASSF5 Missense_Mutation p.E407G 0.06 deleterious(0) benign(0.146) TCGA-CV-6441-01 1 212115325 212115325 C T INTS7 Silent p.V910V 0.21 TCGA-CV-6441-01 1 226925078 226925078 G A ITPKB Missense_Mutation p.P28S 0.40 tolerated_low_confidence(0.28) benign(0.142) TCGA-CV-6441-01 1 22915935 22915935 C T EPHA8 Intron 0.27 TCGA-CV-6441-01 1 25569004 25569004 G T C1orf63 3'UTR 0.20 TCGA-CV-6441-01 1 25611200 25611200 C T RHD Silent p.D95D 0.08 TCGA-CV-6441-01 1 32677785 32677785 G C DCDC2B Missense_Mutation p.Q170H 0.08 deleterious(0.05) benign(0.126) TCGA-CV-6441-01 1 36367908 36367908 C T AGO1 Missense_Mutation p.P456L 0.26 tolerated(0.64) probably_damaging(0.921) TCGA-CV-6441-01 1 36367909 36367909 C A AGO1 Silent p.P456P 0.26 TCGA-CV-6441-01 1 40092678 40092678 G A HEYL Missense_Mutation p.S163L 0.28 tolerated(0.1) benign(0.011) TCGA-CV-6441-01 1 40701683 40701683 G C RLF Missense_Mutation p.D437H 0.16 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 1 5993234 5993237 TACC - NPHP4 Frame_Shift_Del p.K424Nfs*6 0.29 TCGA-CV-6441-01 1 62299323 62299323 C A INADL Intron 0.42 TCGA-CV-6441-01 1 6680226 6680226 T G PHF13 Missense_Mutation p.S169A 0.34 tolerated(0.06) benign(0.152) TCGA-CV-6441-01 1 67396046 67396046 C G MIER1 Intron 0.39 TCGA-CV-6441-01 1 77752661 77752661 A C AK5 Missense_Mutation p.E32D 0.42 tolerated(1) benign(0.014) TCGA-CV-6441-01 1 85630216 85630216 G A SYDE2 Silent p.L1026L 0.31 TCGA-CV-6441-01 1 91861862 91861862 G A HFM1 Missense_Mutation p.H58Y 0.21 tolerated_low_confidence(0.46) benign(0.001) TCGA-CV-6441-01 20 24993469 24993469 G A ACSS1 Silent p.T562T 0.53 TCGA-CV-6441-01 20 30898796 30898796 G A KIF3B Missense_Mutation p.E406K 0.37 tolerated(0.39) benign(0.027) TCGA-CV-6441-01 20 32848176 32848176 C T ASIP 5'UTR 0.16 TCGA-CV-6441-01 20 35532577 35532577 C A SAMHD1 Nonsense_Mutation p.E496* 0.16 TCGA-CV-6441-01 20 41306573 41306573 G - PTPRT Frame_Shift_Del p.T363Hfs*34 0.19 TCGA-CV-6441-01 20 45140723 45140723 G T ZNF334 Missense_Mutation p.Q7K 0.43 deleterious(0.04) benign(0.038) TCGA-CV-6441-01 20 47887747 47887747 C T ZNFX1 Missense_Mutation p.R201H 0.45 tolerated(0.06) probably_damaging(0.998) TCGA-CV-6441-01 20 47990164 47990164 C G KCNB1 Missense_Mutation p.D645H 0.11 tolerated_low_confidence(0.17) benign(0.001) TCGA-CV-6441-01 20 50007836 50007836 G T NFATC2 3'UTR 0.59 TCGA-CV-6441-01 20 58520157 58520157 A T FAM217B 3'UTR 0.18 TCGA-CV-6441-01 20 60884793 60884793 G C LAMA5 Missense_Mutation p.L3643V 0.46 benign(0.03) TCGA-CV-6441-01 21 30380432 30380432 C G RWDD2B Missense_Mutation p.L125F 0.25 deleterious(0.03) probably_damaging(0.97) TCGA-CV-6441-01 21 37650364 37650364 C G DOPEY2 Missense_Mutation p.P1935R 0.20 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 22 18387474 18387474 G A MICAL3 Silent p.F132F 0.26 TCGA-CV-6441-01 22 18389542 18389542 G C MICAL3 Missense_Mutation p.H13D 0.22 probably_damaging(0.995) TCGA-CV-6441-01 22 18389604 18389604 G C MICAL3 5'UTR 0.17 TCGA-CV-6441-01 22 18389636 18389636 G A MICAL3 5'UTR 0.19 TCGA-CV-6441-01 22 24106898 24106898 C T C22orf15 Missense_Mutation p.A108V 0.30 deleterious(0.01) probably_damaging(0.914) TCGA-CV-6441-01 22 38270460 38270460 C T EIF3L Missense_Mutation p.R279C 0.67 deleterious(0) probably_damaging(0.996) TCGA-CV-6441-01 22 41240914 41240914 C T ST13 Splice_Site p.X82_splice 0.32 TCGA-CV-6441-01 22 43898630 43898630 C A MPPED1 Silent p.I285I 0.31 TCGA-CV-6441-01 22 50724681 50724681 G A PLXNB2 Nonsense_Mutation p.R600* 0.75 TCGA-CV-6441-01 2 108626801 108626801 T C SLC5A7 Silent p.S409S 0.41 TCGA-CV-6441-01 2 119727757 119727757 G C MARCO Missense_Mutation p.E89D 0.40 tolerated(0.12) possibly_damaging(0.899) TCGA-CV-6441-01 2 121732650 121732650 A G GLI2 Missense_Mutation p.T445A 0.15 tolerated(0.31) benign(0.008) TCGA-CV-6441-01 2 130902284 130902284 G T CCDC74B Intron 0.16 TCGA-CV-6441-01 2 141598641 141598641 G A LRP1B Silent p.L1654L 0.39 TCGA-CV-6441-01 2 158157196 158157196 G A GALNT5 Missense_Mutation p.M708I 0.11 deleterious(0) probably_damaging(0.99) TCGA-CV-6441-01 2 160206345 160206345 T C BAZ2B Silent p.S1579S 0.37 TCGA-CV-6441-01 2 174229611 174229611 G T CDCA7 Missense_Mutation p.R263M 0.19 deleterious(0) benign(0.087) TCGA-CV-6441-01 2 179430407 179430407 C T TTN Missense_Mutation p.E26818K 0.14 TCGA-CV-6441-01 2 179458509 179458510 - T TTN Frame_Shift_Ins p.D19506Efs*2 0.24 TCGA-CV-6441-01 2 179482556 179482556 A T TTN Missense_Mutation p.V15841D 0.36 TCGA-CV-6441-01 2 179616191 179616192 - T TTN Intron 0.56 TCGA-CV-6441-01 2 180348156 180348156 C A ZNF385B Missense_Mutation p.Q171H 0.47 deleterious(0) probably_damaging(0.998) TCGA-CV-6441-01 2 191872313 191872313 C A STAT1 Silent p.L116L 0.46 TCGA-CV-6441-01 2 204306102 204306102 G A RAPH1 Missense_Mutation p.S604L 0.23 benign(0.115) TCGA-CV-6441-01 2 206641301 206641301 G A NRP2 Intron 0.13 TCGA-CV-6441-01 2 220309817 220309817 C T SPEG Missense_Mutation p.S250F 0.31 probably_damaging(0.965) TCGA-CV-6441-01 2 226446903 226446903 G A NYAP2 Missense_Mutation p.R257K 0.43 tolerated(1) benign(0.001) TCGA-CV-6441-01 2 228131135 228131135 G A COL4A3 Missense_Mutation p.D440N 0.08 benign(0.212) TCGA-CV-6441-01 2 228476153 228476165 TCTTGTGGCTTCT - C2orf83 Frame_Shift_Del p.K133Ifs*31 0.14 TCGA-CV-6441-01 2 234602466 234602466 C T UGT1A6 Silent p.V272V 0.39 TCGA-CV-6441-01 2 242435884 242435884 G C STK25 Missense_Mutation p.F390L 0.17 tolerated_low_confidence(0.16) benign(0.008) TCGA-CV-6441-01 2 27600461 27600461 G T ZNF513 Missense_Mutation p.P526Q 0.36 deleterious_low_confidence(0.02) benign(0.013) TCGA-CV-6441-01 2 37459318 37459318 C G NDUFAF7 Missense_Mutation p.P42R 0.05 tolerated(0.06) benign(0.134) TCGA-CV-6441-01 2 38178983 38178983 C A RMDN2 Missense_Mutation p.Q209K 0.18 tolerated_low_confidence(0.48) benign(0.225) TCGA-CV-6441-01 2 43808911 43808911 C T THADA Silent p.L230L 0.11 TCGA-CV-6441-01 2 47278982 47278982 G T TTC7A Missense_Mutation p.Q705H 0.53 tolerated(0.73) benign(0.008) TCGA-CV-6441-01 2 47278983 47278983 C T TTC7A Silent p.L706L 0.55 TCGA-CV-6441-01 2 7018158 7018158 A G RSAD2 Missense_Mutation p.N76S 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-6441-01 2 86361419 86361419 T G PTCD3 Missense_Mutation p.S516R 0.30 deleterious(0.02) benign(0.434) TCGA-CV-6441-01 3 112358039 112358039 C T CCDC80 Silent p.L238L 0.14 TCGA-CV-6441-01 3 113850024 113850024 T G DRD3 Missense_Mutation p.Q316P 0.18 tolerated(0.06) possibly_damaging(0.713) TCGA-CV-6441-01 3 113955700 113955700 C T ZNF80 Silent p.V74V 0.27 TCGA-CV-6441-01 3 120941894 120941894 C A STXBP5L Missense_Mutation p.A334D 0.36 deleterious(0.01) possibly_damaging(0.744) TCGA-CV-6441-01 3 121126217 121126217 G A STXBP5L Nonsense_Mutation p.W929* 0.10 TCGA-CV-6441-01 3 121554076 121554076 G A EAF2 5'UTR 0.18 TCGA-CV-6441-01 3 153973168 153973168 C G ARHGEF26 Missense_Mutation p.P841R 0.20 deleterious(0) probably_damaging(0.998) TCGA-CV-6441-01 3 170725002 170725002 C T SLC2A2 Missense_Mutation p.A183T 0.16 tolerated(0.47) benign(0.02) TCGA-CV-6441-01 3 46945227 46945227 C G PTH1R 3'UTR 0.38 TCGA-CV-6441-01 3 79067568 79067568 C G ROBO1 Intron 0.58 TCGA-CV-6441-01 3 89498433 89498433 C G EPHA3 Missense_Mutation p.T802R 0.43 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 3 97868318 97868318 C A OR5H14 Missense_Mutation p.A30E 0.31 deleterious(0) benign(0.122) TCGA-CV-6441-01 4 100475021 100475021 T C TRMT10A Missense_Mutation p.D189G 0.82 tolerated(0.06) probably_damaging(0.99) TCGA-CV-6441-01 4 125592804 125592804 G C ANKRD50 Nonsense_Mutation p.S543* 0.77 TCGA-CV-6441-01 4 159091505 159091505 C T FAM198B Intron 0.53 TCGA-CV-6441-01 4 17829921 17829921 G C NCAPG Missense_Mutation p.Q558H 0.36 deleterious(0) benign(0.281) TCGA-CV-6441-01 4 186188282 186188282 C T SNX25 Missense_Mutation p.S191F 0.23 tolerated(0.05) benign(0.372) TCGA-CV-6441-01 4 187627830 187627830 G C FAT1 Nonsense_Mutation p.S1051* 0.65 TCGA-CV-6441-01 4 20525414 20525414 C T SLIT2 Missense_Mutation p.R388W 0.22 deleterious(0) possibly_damaging(0.853) TCGA-CV-6441-01 4 38696416 38696416 G A KLF3 Missense_Mutation p.E249K 0.12 deleterious(0.01) possibly_damaging(0.709) TCGA-CV-6441-01 4 66361186 66361186 T A EPHA5 Missense_Mutation p.H329L 0.35 tolerated(0.33) benign(0) TCGA-CV-6441-01 4 66361187 66361187 G T EPHA5 Missense_Mutation p.H329N 0.35 tolerated(0.49) benign(0) TCGA-CV-6441-01 4 68703947 68703947 G A TMPRSS11D Nonsense_Mutation p.R140* 0.39 TCGA-CV-6441-01 4 68928194 68928194 G C TMPRSS11F Intron 0.42 TCGA-CV-6441-01 4 69978401 69978401 C G UGT2B7 Missense_Mutation p.L513V 0.44 deleterious(0.01) benign(0.299) TCGA-CV-6441-01 4 70152479 70152479 G C UGT2B28 Missense_Mutation p.E294Q 0.35 deleterious(0.01) probably_damaging(0.925) TCGA-CV-6441-01 5 10250377 10250377 C T CCT5 5'UTR 0.09 TCGA-CV-6441-01 5 114598559 114598559 A G PGGT1B 5'UTR 0.78 TCGA-CV-6441-01 5 121411146 121411146 G A LOX Silent p.F277F 0.14 TCGA-CV-6441-01 5 130897699 130897699 A T RAPGEF6 Missense_Mutation p.L108H 0.83 deleterious(0) possibly_damaging(0.713) TCGA-CV-6441-01 5 13901563 13901563 G A DNAH5 Missense_Mutation p.A617V 0.17 benign(0.379) TCGA-CV-6441-01 5 140222091 140222091 C G PCDHA8 Missense_Mutation p.F395L 0.18 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-CV-6441-01 5 141009429 141009429 C T HDAC3 Missense_Mutation p.E140K 0.14 deleterious(0) probably_damaging(0.952) TCGA-CV-6441-01 5 1489929 1489929 G A LPCAT1 Nonsense_Mutation p.Q180* 0.04 TCGA-CV-6441-01 5 159821613 159821613 C G C5orf54 Silent p.V295V 0.23 TCGA-CV-6441-01 5 176618931 176618931 A T NSD1 Missense_Mutation p.D325V 0.72 deleterious(0.01) probably_damaging(0.971) TCGA-CV-6441-01 5 24535254 24535254 C T CDH10 Missense_Mutation p.D261N 0.06 deleterious(0) probably_damaging(0.978) TCGA-CV-6441-01 5 32037403 32037403 C G PDZD2 Missense_Mutation p.P492A 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6441-01 5 37371159 37371159 G C NUP155 5'UTR 0.10 TCGA-CV-6441-01 5 43453838 43453838 T A C5orf28 Silent p.G78G 0.21 TCGA-CV-6441-01 5 5463028 5463028 C G KIAA0947 Missense_Mutation p.S1194C 0.12 deleterious(0.03) benign(0.178) TCGA-CV-6441-01 5 79095241 79095241 G A CMYA5 Silent p.E4004E 0.13 TCGA-CV-6441-01 5 82940335 82940335 C A HAPLN1 Missense_Mutation p.G208C 0.78 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 6 105606561 105606561 G A POPDC3 Silent p.L220L 0.31 TCGA-CV-6441-01 6 106547390 106547390 C G PRDM1 Missense_Mutation p.H209Q 0.77 tolerated(0.07) benign(0) TCGA-CV-6441-01 6 10707670 10707670 G C PAK1IP1 Missense_Mutation p.E255Q 0.20 tolerated(0.1) benign(0.117) TCGA-CV-6441-01 6 163984469 163984469 C G QKI Missense_Mutation p.L218V 0.12 tolerated(0.23) benign(0.338) TCGA-CV-6441-01 6 26056153 26056153 C G HIST1H1C Missense_Mutation p.K168N 0.69 deleterious(0.02) unknown(0) TCGA-CV-6441-01 6 2623874 2623874 G A C6orf195 Silent p.P61P 0.38 TCGA-CV-6441-01 6 27114365 27114365 G A HIST1H2BK Silent p.F71F 0.69 TCGA-CV-6441-01 6 43230556 43230556 C T TTBK1 Missense_Mutation p.S485L 0.50 benign(0.409) TCGA-CV-6441-01 7 100806475 100806475 G A VGF Silent p.I550I 0.11 TCGA-CV-6441-01 7 103053458 103053458 T G SLC26A5 Missense_Mutation p.I132L 0.23 deleterious(0.03) benign(0.003) TCGA-CV-6441-01 7 108154982 108154982 C G PNPLA8 Missense_Mutation p.K318N 0.16 deleterious(0) possibly_damaging(0.461) TCGA-CV-6441-01 7 112461999 112461999 T C C7orf60 Missense_Mutation p.I340V 0.10 deleterious(0.02) possibly_damaging(0.85) TCGA-CV-6441-01 7 11676325 11676325 C T THSD7A Missense_Mutation p.G152S 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-6441-01 7 120613295 120613295 G C ING3 Missense_Mutation p.D380H 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-6441-01 7 130144942 130144942 T C MEST 3'UTR 0.35 TCGA-CV-6441-01 7 150878413 150878413 T C ASB10 Silent p.A239A 0.23 TCGA-CV-6441-01 7 20739693 20739693 G C ABCB5 Missense_Mutation p.G758R 0.30 deleterious(0) probably_damaging(0.993) TCGA-CV-6441-01 7 21678648 21678648 C G DNAH11 Missense_Mutation p.L1642V 0.16 possibly_damaging(0.908) TCGA-CV-6441-01 7 2412331 2412331 G A EIF3B Missense_Mutation p.E571K 0.32 deleterious(0) probably_damaging(0.951) TCGA-CV-6441-01 7 2566545 2566545 G A LFNG Missense_Mutation p.D355N 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-6441-01 7 42079708 42079708 C T GLI3 Silent p.T319T 0.11 TCGA-CV-6441-01 7 44157600 44157600 C T POLD2 Missense_Mutation p.G95D 0.05 deleterious(0) probably_damaging(1) TCGA-CV-6441-01 7 47476871 47476871 A G TNS3 Missense_Mutation p.L64P 0.38 deleterious(0) probably_damaging(0.99) TCGA-CV-6441-01 7 48045610 48045610 C G SUN3 Missense_Mutation p.R178T 0.17 deleterious(0.01) possibly_damaging(0.447) TCGA-CV-6441-01 7 75612906 75612907 - G POR Frame_Shift_Ins p.R301Afs*18 0.24 TCGA-CV-6441-01 7 81355326 81355326 G A HGF Nonsense_Mutation p.R350* 0.27 TCGA-CV-6441-01 7 94024234 94024234 T C COL1A2 5'UTR 0.12 TCGA-CV-6441-01 8 110348368 110348368 G A ENY2 Missense_Mutation p.M6I 0.36 tolerated(0.1) benign(0.001) TCGA-CV-6441-01 8 110590243 110590243 A G SYBU Silent p.R246R 0.21 TCGA-CV-6441-01 8 16850824 16850824 C G FGF20 Missense_Mutation p.E131D 0.25 tolerated(0.06) benign(0.003) TCGA-CV-6441-01 8 19810909 19810909 A T LPL Missense_Mutation p.N173I 0.38 deleterious(0.05) benign(0.278) TCGA-CV-6441-01 8 48887407 48887407 T A MCM4 Silent p.S750S 0.07 TCGA-CV-6441-01 8 51705261 51705261 C G SNTG1 Missense_Mutation p.L476V 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-6441-01 8 56698298 56698298 G C TGS1 Missense_Mutation p.E63Q 0.21 deleterious(0.01) possibly_damaging(0.548) TCGA-CV-6441-01 8 59059795 59059795 G A FAM110B Missense_Mutation p.D336N 0.50 deleterious(0) benign(0.063) TCGA-CV-6441-01 8 81899630 81899630 C T PAG1 Silent p.Q83Q 0.16 TCGA-CV-6441-01 9 100887010 100887010 G A CORO2A 3'UTR 0.35 TCGA-CV-6441-01 9 114986066 114986066 C G PTBP3 3'UTR 0.21 TCGA-CV-6441-01 9 138454276 138454276 G A PAEP Missense_Mutation p.R78K 0.11 tolerated(1) benign(0.191) TCGA-CV-6441-01 9 140145786 140145788 CAT - C9orf173 In_Frame_Del p.I17del 0.84 TCGA-CV-6441-01 9 18753314 18753314 G A ADAMTSL1 Nonsense_Mutation p.W675* 0.83 TCGA-CV-6441-01 9 18928327 18928327 G T FAM154A Missense_Mutation p.P383H 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-CV-6441-01 9 2653941 2653941 G C VLDLR 3'UTR 0.82 TCGA-CV-6441-01 9 35044434 35044434 C T C9orf131 Missense_Mutation p.P603L 0.23 tolerated(0.12) possibly_damaging(0.866) TCGA-CV-6441-01 9 35044709 35044709 C G C9orf131 Missense_Mutation p.L695V 0.29 tolerated(0.34) possibly_damaging(0.862) TCGA-CV-6441-01 9 8471058 8471058 C G PTPRD Missense_Mutation p.L1147F 0.67 deleterious(0.03) probably_damaging(0.982) TCGA-CV-6441-01 9 95256393 95256393 C T ECM2 3'Flank 0.17 TCGA-CV-6441-01 X 101159303 101159303 T C ZMAT1 Missense_Mutation p.D41G 0.33 tolerated(0.05) benign(0.129) TCGA-CV-6441-01 X 1471251 1471251 G A IL3RA Silent p.T156T 0.36 TCGA-CV-6441-01 X 151092296 151092296 G A MAGEA4 Missense_Mutation p.V54M 0.80 deleterious(0.03) possibly_damaging(0.596) TCGA-CV-6441-01 X 153596026 153596026 A T FLNA Missense_Mutation p.W235R 0.73 deleterious(0) probably_damaging(0.974) TCGA-CV-6441-01 X 15711112 15711112 C T CA5BP1 RNA 0.31 TCGA-CV-6441-01 Y 15816245 15816245 C G TMSB4Y Missense_Mutation p.I10M 0.44 tolerated(0.11) possibly_damaging(0.665) TCGA-CV-6441-01 Y 6114274 6114274 G A TSPY2 5'UTR 0.65 TCGA-CV-6933-01 10 102283570 102283570 G T NDUFB8 3'UTR 0.20 TCGA-CV-6933-01 10 117823894 117823894 A T GFRA1 3'UTR 0.30 TCGA-CV-6933-01 10 15151773 15151773 C G NMT2 Missense_Mutation p.K468N 0.14 deleterious(0) probably_damaging(0.999) TCGA-CV-6933-01 10 93718943 93718943 G T BTAF1 Intron 0.23 TCGA-CV-6933-01 11 107431547 107431547 C T ALKBH8 Missense_Mutation p.A25T 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-CV-6933-01 11 123811175 123811175 T C OR4D5 Silent p.P284P 0.21 TCGA-CV-6933-01 11 5142746 5142746 G A OR52A4 RNA 0.16 TCGA-CV-6933-01 11 55761646 55761646 C A OR5F1 Silent p.G152G 0.14 TCGA-CV-6933-01 11 62532822 62532822 C T POLR2G Missense_Mutation p.S115L 0.08 tolerated(0.14) benign(0.032) TCGA-CV-6933-01 11 62569082 62569082 C T NXF1 Missense_Mutation p.D221N 0.09 tolerated(0.12) benign(0.101) TCGA-CV-6933-01 12 104732985 104732985 G A TXNRD1 Silent p.A605A 0.22 TCGA-CV-6933-01 12 32886735 32886735 T C DNM1L Silent p.N511N 0.27 TCGA-CV-6933-01 12 55714812 55714812 T G OR6C1 Silent p.V143V 0.18 TCGA-CV-6933-01 12 56663287 56663287 T C COQ10A Missense_Mutation p.I173T 0.13 tolerated(0.15) benign(0.03) TCGA-CV-6933-01 12 65564805 65564805 C G LEMD3 Missense_Mutation p.L477V 0.38 deleterious(0) probably_damaging(0.979) TCGA-CV-6933-01 12 81777935 81777935 A T PPFIA2 Missense_Mutation p.M284K 0.27 deleterious(0.01) benign(0.004) TCGA-CV-6933-01 12 8211391 8211391 C T C3AR1 Missense_Mutation p.R464H 0.27 tolerated(1) benign(0) TCGA-CV-6933-01 12 88589416 88589416 A G TMTC3 Missense_Mutation p.N912S 0.17 tolerated_low_confidence(0.72) benign(0.034) TCGA-CV-6933-01 12 9092018 9092018 A T PHC1 Missense_Mutation p.K993M 0.45 deleterious(0) unknown(0) TCGA-CV-6933-01 12 9353588 9353588 G C PZP Silent p.S190S 0.17 TCGA-CV-6933-01 12 94648533 94648533 T C PLXNC1 Intron 0.26 TCGA-CV-6933-01 13 23910945 23910945 T A SACS Missense_Mutation p.E2357V 0.33 benign(0.028) TCGA-CV-6933-01 13 41134865 41134865 C T FOXO1 Missense_Mutation p.A255T 0.10 tolerated(0.09) possibly_damaging(0.715) TCGA-CV-6933-01 13 45148997 45148997 G A TSC22D1 Missense_Mutation p.S405L 0.24 deleterious(0) probably_damaging(0.99) TCGA-CV-6933-01 13 53608558 53608558 T A OLFM4 Missense_Mutation p.F94I 0.10 tolerated(0.36) possibly_damaging(0.831) TCGA-CV-6933-01 13 60413536 60413536 C A DIAPH3 Missense_Mutation p.Q928H 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-CV-6933-01 13 79191286 79191286 T C RNF219 Intron 0.41 TCGA-CV-6933-01 13 84455394 84455394 A T SLITRK1 Missense_Mutation p.N83K 0.32 tolerated(0.07) possibly_damaging(0.622) TCGA-CV-6933-01 14 19553517 19553517 G T POTEG Missense_Mutation p.W34L 0.08 deleterious_low_confidence(0) benign(0) TCGA-CV-6933-01 14 52520462 52520462 G T NID2 Missense_Mutation p.P422T 0.26 tolerated(0.24) benign(0.382) TCGA-CV-6933-01 14 64468762 64468762 A T SYNE2 Missense_Mutation p.H1250L 0.28 benign(0.206) TCGA-CV-6933-01 14 76549919 76549919 G C IFT43 Nonstop_Mutation p.*214Sext*13 0.09 TCGA-CV-6933-01 14 76957942 76957942 C T ESRRB Missense_Mutation p.L314F 0.31 deleterious(0.04) possibly_damaging(0.54) TCGA-CV-6933-01 14 88945598 88945598 C G PTPN21 Missense_Mutation p.R726P 0.12 tolerated_low_confidence(0.24) benign(0) TCGA-CV-6933-01 15 20649492 20649492 C G HERC2P3 RNA 0.20 TCGA-CV-6933-01 15 22473131 22473131 G T IGHV4OR15-8 Missense_Mutation p.S47Y 0.15 deleterious(0.01) possibly_damaging(0.508) TCGA-CV-6933-01 15 22473323 22473323 C A IGHV4OR15-8 Missense_Mutation p.V11L 0.12 tolerated(0.61) benign(0.009) TCGA-CV-6933-01 15 23889583 23889583 A G MAGEL2 Missense_Mutation p.S500P 0.11 tolerated(0.42) benign(0.011) TCGA-CV-6933-01 15 23931584 23931584 A G NDN Missense_Mutation p.F261L 0.08 tolerated(0.66) benign(0.026) TCGA-CV-6933-01 15 55838317 55838317 T A PYGO1 Silent p.A388A 0.27 TCGA-CV-6933-01 15 99901641 99901641 G A LRRC28 Missense_Mutation p.E266K 0.48 tolerated(0.21) benign(0.004) TCGA-CV-6933-01 16 18875116 18875116 T C SMG1 Missense_Mutation p.N1184S 0.24 tolerated(0.31) probably_damaging(0.97) TCGA-CV-6933-01 16 71570812 71570812 G A CHST4 Missense_Mutation p.V78M 0.34 deleterious(0) probably_damaging(0.958) TCGA-CV-6933-01 17 3101177 3101177 G A OR1A2 Missense_Mutation p.R122Q 0.33 deleterious(0) possibly_damaging(0.709) TCGA-CV-6933-01 17 62081229 62081229 G T ICAM2 Missense_Mutation p.L142M 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-CV-6933-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.41 TCGA-CV-6933-01 17 7752094 7752094 G A KDM6B Missense_Mutation p.G830R 0.06 probably_damaging(0.979) TCGA-CV-6933-01 18 48252451 48252451 C T MAPK4 Nonsense_Mutation p.Q325* 0.54 TCGA-CV-6933-01 18 64172067 64172067 T A CDH19 Silent p.A767A 0.48 TCGA-CV-6933-01 19 15839701 15839701 C T OR10H2 Missense_Mutation p.T283M 0.19 deleterious(0) probably_damaging(1) TCGA-CV-6933-01 19 19260222 19260222 C G MEF2B Missense_Mutation p.R24P 0.22 deleterious(0) probably_damaging(0.998) TCGA-CV-6933-01 19 21990434 21990434 G A ZNF43 Missense_Mutation p.P802L 0.16 tolerated(0.68) benign(0.038) TCGA-CV-6933-01 19 51984689 51984689 T C CEACAM18 Missense_Mutation p.L209P 0.54 tolerated(0.15) possibly_damaging(0.862) TCGA-CV-6933-01 19 8191467 8191467 C T FBN3 Nonsense_Mutation p.W813* 0.35 TCGA-CV-6933-01 1 11298657 11298657 A G MTOR Missense_Mutation p.F602L 0.57 deleterious(0.03) benign(0.006) TCGA-CV-6933-01 1 150934615 150934615 G A SETDB1 Missense_Mutation p.D1047N 0.29 tolerated_low_confidence(0.13) benign(0.003) TCGA-CV-6933-01 1 152286148 152286148 G C FLG Missense_Mutation p.A405G 0.29 benign(0.32) TCGA-CV-6933-01 1 196876522 196876522 G A CFHR4 Silent p.L230L 0.09 TCGA-CV-6933-01 1 207236550 207236550 T C PFKFB2 Missense_Mutation p.I124T 0.08 probably_damaging(1) TCGA-CV-6933-01 1 212521732 212521732 A T PPP2R5A Missense_Mutation p.I256F 0.27 deleterious(0) probably_damaging(1) TCGA-CV-6933-01 1 220253139 220253139 G C BPNT1 Missense_Mutation p.S17C 0.12 tolerated(0.08) probably_damaging(0.942) TCGA-CV-6933-01 1 241958516 241958516 G C WDR64 Missense_Mutation p.R992T 0.18 tolerated(0.06) benign(0.007) TCGA-CV-6933-01 1 248458107 248458107 C T OR2T12 Missense_Mutation p.M258I 0.34 tolerated(0.05) benign(0.158) TCGA-CV-6933-01 1 248551197 248551197 C A OR2T6 Silent p.A96A 0.27 TCGA-CV-6933-01 1 27677312 27677312 G T SYTL1 Missense_Mutation p.G345C 0.45 deleterious(0) probably_damaging(0.992) TCGA-CV-6933-01 1 49202034 49202034 C T BEND5 Missense_Mutation p.A329T 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-CV-6933-01 1 59131251 59131251 T C MYSM1 Missense_Mutation p.Y695C 0.12 deleterious(0) probably_damaging(0.997) TCGA-CV-6933-01 1 89616146 89616146 T A GBP7 Missense_Mutation p.L246F 0.31 deleterious(0) probably_damaging(0.993) TCGA-CV-6933-01 1 99772515 99772515 T C LPPR4 Silent p.T747T 0.29 TCGA-CV-6933-01 20 21143094 21143094 G A RP4-777D9.2 Intron 0.25 TCGA-CV-6933-01 20 21377938 21377938 C T NKX2-4 Missense_Mutation p.A34T 0.40 tolerated(0.38) benign(0.372) TCGA-CV-6933-01 20 25459583 25459583 T C NINL Missense_Mutation p.H726R 0.31 tolerated(0.06) probably_damaging(0.976) TCGA-CV-6933-01 20 33524591 33524591 G A GSS Silent p.L248L 0.16 TCGA-CV-6933-01 20 62122079 62122079 G A EEF1A2 Missense_Mutation p.T261M 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-6933-01 20 9364994 9364994 G A PLCB4 Missense_Mutation p.G334S 0.32 deleterious(0) probably_damaging(1) TCGA-CV-6933-01 21 10862909 10862909 T G IGHV1OR21-1 Missense_Mutation p.L69V 0.05 tolerated(0.47) benign(0.001) TCGA-CV-6933-01 21 45993906 45993906 C A KRTAP10-4 Missense_Mutation p.Q91K 0.12 tolerated(0.05) unknown(0) TCGA-CV-6933-01 22 20127041 20127041 G A ZDHHC8 Silent p.P89P 0.57 TCGA-CV-6933-01 2 116510763 116510763 A C DPP10 Missense_Mutation p.T326P 0.12 deleterious(0.03) benign(0.183) TCGA-CV-6933-01 2 136111147 136111147 C G ZRANB3 Missense_Mutation p.E78Q 0.06 tolerated(0.53) benign(0.1) TCGA-CV-6933-01 2 141299370 141299370 A T LRP1B Silent p.A2455A 0.06 TCGA-CV-6933-01 2 163228467 163228467 G T KCNH7 Missense_Mutation p.H1155N 0.14 tolerated_low_confidence(0.48) benign(0.021) TCGA-CV-6933-01 2 166901572 166901572 C G SCN1A Missense_Mutation p.R548T 0.34 tolerated(0.13) benign(0.341) TCGA-CV-6933-01 2 168115072 168115072 G T XIRP2 3'UTR 0.14 TCGA-CV-6933-01 2 27278036 27278036 C T AGBL5 Missense_Mutation p.P275S 0.13 deleterious(0.03) possibly_damaging(0.864) TCGA-CV-6933-01 2 37234297 37234298 - AACCAG HEATR5B In_Frame_Ins p.S1556_G1557dup 0.13 TCGA-CV-6933-01 2 88991201 88991201 G C RPIA 5'UTR 0.10 TCGA-CV-6933-01 3 115395102 115395102 C T GAP43 Silent p.A127A 0.16 TCGA-CV-6933-01 3 196281606 196281606 T C WDR53 Missense_Mutation p.M185V 0.22 tolerated(0.34) benign(0) TCGA-CV-6933-01 3 33885692 33885692 A C PDCD6IP Missense_Mutation p.E488A 0.05 tolerated(0.13) benign(0.004) TCGA-CV-6933-01 4 108641421 108641421 G C PAPSS1 5'UTR 0.44 TCGA-CV-6933-01 4 121958183 121958183 A T NDNF Missense_Mutation p.F315I 0.18 deleterious(0) probably_damaging(0.974) TCGA-CV-6933-01 4 47939078 47939078 C T CNGA1 Missense_Mutation p.R547H 0.18 deleterious(0.01) probably_damaging(1) TCGA-CV-6933-01 4 73956863 73956863 T A ANKRD17 Missense_Mutation p.Q2161L 0.18 benign(0.002) TCGA-CV-6933-01 4 88584472 88584472 G C DMP1 Nonstop_Mutation p.*514Yext*5 0.19 TCGA-CV-6933-01 4 96761919 96761919 C T PDHA2 Silent p.F206F 0.21 TCGA-CV-6933-01 5 156741393 156741393 G A CYFIP2 Silent p.E358E 0.39 TCGA-CV-6933-01 5 176519733 176519733 A G FGFR4 Silent p.A335A 0.42 TCGA-CV-6933-01 5 24487650 24487650 G T CDH10 3'UTR 0.35 TCGA-CV-6933-01 5 79027402 79027402 T C CMYA5 Silent p.D938D 0.54 TCGA-CV-6933-01 5 90041015 90041015 C G GPR98 Missense_Mutation p.L3568V 0.23 benign(0.002) TCGA-CV-6933-01 6 110421867 110421867 T C WASF1 Missense_Mutation p.K513R 0.37 tolerated(0.05) probably_damaging(0.982) TCGA-CV-6933-01 6 117724426 117724426 C T ROS1 Silent p.P151P 0.29 TCGA-CV-6933-01 6 119232721 119232721 A G MCM9 Intron 0.50 TCGA-CV-6933-01 6 128404886 128404886 G C PTPRK Missense_Mutation p.P517A 0.16 deleterious(0.04) probably_damaging(0.991) TCGA-CV-6933-01 6 26205025 26205025 C A HIST1H4E Silent p.I51I 0.35 TCGA-CV-6933-01 6 33283873 33283873 G A ZBTB22 Missense_Mutation p.A274V 0.19 tolerated(0.49) benign(0.001) TCGA-CV-6933-01 6 4037761 4037761 C T PRPF4B Missense_Mutation p.R457C 0.33 deleterious(0) possibly_damaging(0.689) TCGA-CV-6933-01 6 41889501 41889501 G C BYSL Missense_Mutation p.E67D 0.33 tolerated(0.53) benign(0.038) TCGA-CV-6933-01 6 57512691 57512691 G A PRIM2 3'UTR 0.03 TCGA-CV-6933-01 6 83849755 83849755 G A DOPEY1 Missense_Mutation p.M1719I 0.16 deleterious(0.03) benign(0.006) TCGA-CV-6933-01 6 83896760 83896760 C T PGM3 Missense_Mutation p.D170N 0.24 tolerated(0.06) possibly_damaging(0.816) TCGA-CV-6933-01 6 90097155 90097155 G T RRAGD Nonsense_Mutation p.C101* 0.34 TCGA-CV-6933-01 7 106513012 106513012 G A PIK3CG Missense_Mutation p.A676T 0.39 tolerated(0.17) probably_damaging(0.909) TCGA-CV-6933-01 7 107820812 107820813 - T NRCAM Frame_Shift_Ins p.I903Dfs*20 0.13 TCGA-CV-6933-01 7 11675953 11675953 T A THSD7A Nonsense_Mutation p.R276* 0.24 TCGA-CV-6933-01 7 23825129 23825129 A G STK31 Silent p.E727E 0.28 TCGA-CV-6933-01 7 44556434 44556434 G A NPC1L1 Silent p.L1156L 0.25 TCGA-CV-6933-01 7 57187885 57187885 C G ZNF479 Missense_Mutation p.E413Q 0.11 deleterious(0.02) possibly_damaging(0.462) TCGA-CV-6933-01 7 57188238 57188238 C G ZNF479 Missense_Mutation p.R295T 0.08 deleterious(0) benign(0.375) TCGA-CV-6933-01 7 72413634 72413634 G A POM121 Silent p.T769T 0.11 TCGA-CV-6933-01 7 87913172 87913172 G C STEAP4 Nonsense_Mutation p.S138* 0.79 TCGA-CV-6933-01 8 104987601 104987601 C G RIMS2 Missense_Mutation p.L932V 0.21 tolerated_low_confidence(0.42) possibly_damaging(0.79) TCGA-CV-6933-01 8 105361225 105361225 C T DCSTAMP Nonsense_Mutation p.Q149* 0.14 TCGA-CV-6933-01 8 105521276 105521276 G - LRP12 Frame_Shift_Del p.R55Efs*6 0.10 TCGA-CV-6933-01 8 139601580 139601580 G A COL22A1 Silent p.P1599P 0.17 TCGA-CV-6933-01 8 144671365 144671365 C T EEF1D Missense_Mutation p.G296E 0.18 tolerated(0.43) benign(0.101) TCGA-CV-6933-01 8 146107136 146107136 C G ZNF250 Missense_Mutation p.E483Q 0.14 tolerated(0.13) benign(0.009) TCGA-CV-6933-01 8 146107269 146107269 C G ZNF250 Silent p.L438L 0.15 TCGA-CV-6933-01 8 25154152 25154152 C T DOCK5 Silent p.I198I 0.36 TCGA-CV-6933-01 8 25365207 25365207 C G CDCA2 Missense_Mutation p.L1009V 0.13 tolerated(0.09) benign(0.147) TCGA-CV-6933-01 8 48614380 48614380 A G SPIDR Missense_Mutation p.K624R 0.33 tolerated(0.1) benign(0.004) TCGA-CV-6933-01 8 72948640 72948640 G A TRPA1 Missense_Mutation p.T813M 0.19 deleterious(0.03) probably_damaging(1) TCGA-CV-6933-01 8 87591016 87591016 C T CNGB3 Silent p.P668P 0.10 TCGA-CV-6933-01 9 118997917 118997917 G T PAPPA Splice_Site p.X911_splice 0.29 TCGA-CV-6933-01 9 134343088 134343088 A G PRRC2B Missense_Mutation p.Y620C 0.31 deleterious(0.02) probably_damaging(0.927) TCGA-CV-6933-01 9 139874395 139874395 C T PTGDS Intron 0.08 TCGA-CV-6933-01 9 140911625 140911625 A T CACNA1B Intron 0.31 TCGA-CV-6933-01 9 72131553 72131553 C T APBA1 Missense_Mutation p.G192S 0.16 tolerated_low_confidence(0.11) benign(0.02) TCGA-CV-6933-01 9 93650902 93650902 A G SYK Missense_Mutation p.T610A 0.26 tolerated(0.15) probably_damaging(0.997) TCGA-CV-6933-01 X 107924156 107924156 G T COL4A5 Nonsense_Mutation p.E1353* 0.65 TCGA-CV-6933-01 X 119077333 119077338 CGCGAC - NKAP In_Frame_Del p.S80_R81del 0.65 TCGA-CV-6933-01 X 120008850 120008850 C G CT47B1 Missense_Mutation p.E225D 0.05 tolerated(0.14) unknown(0) TCGA-CV-6933-01 X 1752052 1752052 G C ASMT Missense_Mutation p.G219A 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-6933-01 X 34961338 34961338 C T FAM47B Silent p.P130P 0.63 TCGA-CV-6933-01 X 5811511 5811511 A G NLGN4X Silent p.L600L 0.54 TCGA-CV-6934-01 10 106960976 106960976 A C SORCS3 Silent p.S742S 0.14 TCGA-CV-6934-01 10 13698719 13698719 G A FRMD4A Missense_Mutation p.S957L 0.09 deleterious(0) probably_damaging(0.978) TCGA-CV-6934-01 10 17126460 17126460 G A CUBN Missense_Mutation p.S704L 0.28 tolerated(0.13) benign(0.008) TCGA-CV-6934-01 10 60148561 60148561 A T TFAM Missense_Mutation p.K141N 0.22 deleterious(0) possibly_damaging(0.49) TCGA-CV-6934-01 10 76803647 76803647 C G DUPD1 Missense_Mutation p.G110A 0.22 deleterious(0.01) probably_damaging(0.958) TCGA-CV-6934-01 10 99132919 99132919 A C RRP12 Missense_Mutation p.F689V 0.05 deleterious(0) possibly_damaging(0.756) TCGA-CV-6934-01 11 102709884 102709884 G A MMP3 Silent p.A342A 0.27 TCGA-CV-6934-01 11 103022985 103022985 G T DYNC2H1 Nonsense_Mutation p.E1023* 0.11 TCGA-CV-6934-01 11 108044157 108044157 T A NPAT Missense_Mutation p.E518D 0.27 tolerated(0.45) possibly_damaging(0.827) TCGA-CV-6934-01 11 123993667 123993667 G A VWA5A Missense_Mutation p.G254D 0.09 tolerated(0.75) benign(0.016) TCGA-CV-6934-01 11 55065365 55065365 A G TRIM51HP RNA 0.29 TCGA-CV-6934-01 11 57466839 57466839 C T ZDHHC5 Missense_Mutation p.P644L 0.26 deleterious(0.01) benign(0.01) TCGA-CV-6934-01 11 63994371 63994371 G T NUDT22 Missense_Mutation p.G83C 0.20 deleterious(0) probably_damaging(1) TCGA-CV-6934-01 11 66626406 66626406 C T LRFN4 Silent p.A397A 0.08 TCGA-CV-6934-01 11 74562186 74562186 T G XRRA1 Missense_Mutation p.K435Q 0.20 deleterious(0.05) benign(0.178) TCGA-CV-6934-01 11 85712203 85712203 T A PICALM Splice_Site p.X298_splice 0.22 TCGA-CV-6934-01 11 86518800 86518800 G A PRSS23 Missense_Mutation p.V39I 0.20 tolerated(0.2) benign(0.002) TCGA-CV-6934-01 11 9759763 9759763 C T SWAP70 Silent p.L362L 0.26 TCGA-CV-6934-01 12 124268652 124268652 C T DNAH10 Silent p.T325T 0.22 TCGA-CV-6934-01 12 132534871 132534871 A G EP400 Missense_Mutation p.K2402E 0.19 unknown(0) TCGA-CV-6934-01 12 29659813 29659813 C T TMTC1 Missense_Mutation p.R872Q 0.09 deleterious(0.03) possibly_damaging(0.862) TCGA-CV-6934-01 12 56351770 56351770 G A PMEL Missense_Mutation p.H190Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-6934-01 12 56351771 56351771 G A PMEL Silent p.Y189Y 0.15 TCGA-CV-6934-01 12 72863583 72863583 G T TRHDE Missense_Mutation p.W409L 0.18 deleterious(0) probably_damaging(1) TCGA-CV-6934-01 13 23898716 23898716 G A SGCG 3'UTR 0.42 TCGA-CV-6934-01 13 95230316 95230316 G T TGDS Missense_Mutation p.N256K 0.14 deleterious(0) benign(0.224) TCGA-CV-6934-01 14 105409742 105409742 G T AHNAK2 Missense_Mutation p.L4016I 0.32 possibly_damaging(0.71) TCGA-CV-6934-01 14 24610485 24610485 G C EMC9 Missense_Mutation p.A10G 0.43 deleterious(0.01) probably_damaging(0.988) TCGA-CV-6934-01 15 22369305 22369305 T G OR4M2 Missense_Mutation p.S244A 0.14 tolerated(0.5) benign(0.114) TCGA-CV-6934-01 15 66828269 66828269 A T ZWILCH Splice_Site p.X448_splice 0.07 TCGA-CV-6934-01 15 67995696 67995696 C A MAP2K5 Missense_Mutation p.Q332K 0.19 deleterious(0.05) benign(0.268) TCGA-CV-6934-01 16 1260937 1260937 G A CACNA1H Missense_Mutation p.V1397M 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-6934-01 16 29884953 29884953 C A SEZ6L2 Silent p.L734L 0.12 TCGA-CV-6934-01 16 71319701 71319705 ATTAA - CMTR2 Frame_Shift_Del p.L40Qfs*2 0.47 TCGA-CV-6934-01 17 49270365 49270365 G C MBTD1 Missense_Mutation p.H490D 0.17 deleterious(0) possibly_damaging(0.752) TCGA-CV-6934-01 17 54428211 54428211 C T ANKFN1 Silent p.N94N 0.16 TCGA-CV-6934-01 17 67270205 67270205 T C ABCA5 Missense_Mutation p.K887E 0.21 tolerated(0.48) possibly_damaging(0.542) TCGA-CV-6934-01 17 73059132 73059132 C T KCTD2 Missense_Mutation p.S261L 0.14 deleterious(0.02) possibly_damaging(0.851) TCGA-CV-6934-01 17 73500710 73500710 C T CASKIN2 Silent p.G419G 0.12 TCGA-CV-6934-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.41 deleterious(0) probably_damaging(0.99) TCGA-CV-6934-01 17 9923233 9923233 A T GAS7 Intron 0.17 TCGA-CV-6934-01 18 13885391 13885391 G A MC2R Silent p.L43L 0.27 TCGA-CV-6934-01 18 30093118 30093118 G T WBP11P1 RNA 0.14 TCGA-CV-6934-01 19 11038315 11038315 G A YIPF2 Silent p.D90D 0.16 TCGA-CV-6934-01 19 44590486 44590486 G A ZNF284 Silent p.K285K 0.24 TCGA-CV-6934-01 19 51986513 51986513 A T CEACAM18 Missense_Mutation p.I367F 0.27 deleterious(0.03) possibly_damaging(0.5) TCGA-CV-6934-01 19 54965698 54965698 C T LENG8 Silent p.P172P 0.14 TCGA-CV-6934-01 19 55995170 55995170 G A ZNF628 Silent p.V870V 0.12 TCGA-CV-6934-01 19 58213526 58213526 C T ZNF154 Missense_Mutation p.R264Q 0.18 tolerated(1) benign(0.017) TCGA-CV-6934-01 1 111778261 111778261 G T CHI3L2 Nonsense_Mutation p.E161* 0.25 TCGA-CV-6934-01 1 12954474 12954474 T A PRAMEF10 Missense_Mutation p.Q270L 0.19 deleterious(0) possibly_damaging(0.887) TCGA-CV-6934-01 1 153604096 153604096 C A S100A1 Intron 0.20 TCGA-CV-6934-01 1 15771229 15771229 G A CTRC Missense_Mutation p.V208I 0.15 tolerated(0.55) benign(0.002) TCGA-CV-6934-01 1 166826916 166826916 A G TADA1 Missense_Mutation p.L299P 0.27 tolerated(0.1) benign(0.275) TCGA-CV-6934-01 1 183095288 183095288 G A LAMC1 Silent p.G945G 0.25 TCGA-CV-6934-01 1 196197396 196197396 G T KCNT2 Nonsense_Mutation p.C1122* 0.16 TCGA-CV-6934-01 1 205034950 205034950 G A CNTN2 Missense_Mutation p.A577T 0.23 tolerated(0.1) benign(0.358) TCGA-CV-6934-01 1 226074402 226074402 G A LEFTY1 3'UTR 0.33 TCGA-CV-6934-01 1 226334387 226334387 T C ACBD3 Missense_Mutation p.Y504C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-6934-01 1 228431117 228431117 G A OBSCN Missense_Mutation p.E1147K 0.17 possibly_damaging(0.826) TCGA-CV-6934-01 1 228596742 228596742 T C TRIM17 Intron 0.18 TCGA-CV-6934-01 1 27427055 27427055 C T SLC9A1 Missense_Mutation p.D731N 0.20 tolerated(0.29) benign(0.006) TCGA-CV-6934-01 1 27736225 27736225 T A WASF2 Missense_Mutation p.S434C 0.13 deleterious(0) probably_damaging(0.995) TCGA-CV-6934-01 1 28800237 28800237 C G PHACTR4 Missense_Mutation p.S342W 0.22 tolerated(0.18) benign(0.022) TCGA-CV-6934-01 1 33502361 33502361 A G AK2 Silent p.P23P 0.17 TCGA-CV-6934-01 1 35853113 35853113 A T ZMYM4 Missense_Mutation p.N724I 0.26 tolerated(0.34) benign(0.281) TCGA-CV-6934-01 20 13856702 13856702 A T SEL1L2 Missense_Mutation p.F362L 0.28 deleterious(0.03) possibly_damaging(0.817) TCGA-CV-6934-01 20 1600540 1600540 C A SIRPB1 Missense_Mutation p.M17I 0.11 deleterious(0.03) benign(0.005) TCGA-CV-6934-01 20 47897282 47897282 A G ZNFX1 5'Flank 0.22 TCGA-CV-6934-01 22 20127696 20127696 T A ZDHHC8 Missense_Mutation p.F206I 0.15 deleterious(0) probably_damaging(0.995) TCGA-CV-6934-01 22 31333632 31333632 G A MORC2 Missense_Mutation p.P417L 0.15 deleterious(0.01) probably_damaging(1) TCGA-CV-6934-01 22 45574201 45574201 C T NUP50 Silent p.S141S 0.19 TCGA-CV-6934-01 2 152375496 152375496 T G NEB Missense_Mutation p.S7560R 0.13 probably_damaging(1) TCGA-CV-6934-01 2 168106357 168106357 G A XIRP2 Missense_Mutation p.E2819K 0.18 benign(0.131) TCGA-CV-6934-01 2 171906348 171906348 C G TLK1 Missense_Mutation p.G319A 0.20 deleterious(0.02) probably_damaging(0.983) TCGA-CV-6934-01 2 179483053 179483053 G T TTN Missense_Mutation p.A15711E 0.15 TCGA-CV-6934-01 2 179549086 179549086 G A TTN Missense_Mutation p.T10898I 0.10 TCGA-CV-6934-01 2 27822849 27822849 G A ZNF512 Missense_Mutation p.R129Q 0.25 tolerated(0.52) probably_damaging(0.968) TCGA-CV-6934-01 3 179754423 179754423 C T PEX5L 5'UTR 0.08 TCGA-CV-6934-01 3 181430873 181430873 C T SOX2 Missense_Mutation p.S242L 0.16 deleterious(0) benign(0.024) TCGA-CV-6934-01 4 119621732 119621732 G C METTL14 Missense_Mutation p.A225P 0.14 deleterious(0) possibly_damaging(0.604) TCGA-CV-6934-01 4 119727067 119727067 C G SEC24D Missense_Mutation p.V282L 0.26 tolerated(0.29) benign(0.004) TCGA-CV-6934-01 4 89052340 89052340 G T ABCG2 Missense_Mutation p.T135K 0.09 deleterious(0) probably_damaging(0.998) TCGA-CV-6934-01 5 11082866 11082866 G A CTNND2 Silent p.C910C 0.20 TCGA-CV-6934-01 5 162900509 162900509 T G HMMR Missense_Mutation p.S284A 0.10 tolerated(0.17) possibly_damaging(0.654) TCGA-CV-6934-01 5 76251503 76251503 G A CRHBP Missense_Mutation p.G120E 0.22 deleterious(0) probably_damaging(0.996) TCGA-CV-6934-01 6 10830857 10830857 G - MAK Frame_Shift_Del p.Q9Sfs*27 0.12 TCGA-CV-6934-01 6 157525122 157525122 C G ARID1B Missense_Mutation p.L1673V 0.22 probably_damaging(0.99) TCGA-CV-6934-01 6 168281147 168281147 G C MLLT4 Missense_Mutation p.E283Q 0.08 tolerated(0.13) possibly_damaging(0.822) TCGA-CV-6934-01 6 22290542 22290542 G T PRL Missense_Mutation p.S118Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-6934-01 6 26250638 26250638 G A HIST1H3F Silent p.L66L 0.12 TCGA-CV-6934-01 6 28116421 28116421 G T ZKSCAN8 Missense_Mutation p.W79L 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-6934-01 6 29455526 29455526 G A MAS1L Missense_Mutation p.L52F 0.25 deleterious(0.03) benign(0.429) TCGA-CV-6934-01 6 32020730 32020730 C T TNXB Silent p.T2942T 0.12 TCGA-CV-6934-01 6 32906579 32906579 C T HLA-DMB Silent p.A73A 0.14 TCGA-CV-6934-01 6 46107985 46107985 A G ENPP4 Missense_Mutation p.K222R 0.19 deleterious(0.03) benign(0.145) TCGA-CV-6934-01 6 84563844 84563844 C T RIPPLY2 Missense_Mutation p.A68V 0.14 deleterious(0) possibly_damaging(0.842) TCGA-CV-6934-01 7 133886291 133886291 G C LRGUK Missense_Mutation p.L602F 0.14 deleterious(0.03) benign(0.167) TCGA-CV-6934-01 7 142008732 142008732 A C TRBV3-1 Missense_Mutation p.N69H 0.08 deleterious(0.01) probably_damaging(0.935) TCGA-CV-6934-01 7 32599009 32599010 - G AVL9 Frame_Shift_Ins p.I384Dfs*52 0.11 TCGA-CV-6934-01 7 5103363 5103363 A G RBAK-RBAKDN Intron 0.17 TCGA-CV-6934-01 7 92762824 92762824 C T SAMD9L Missense_Mutation p.V821I 0.28 tolerated(0.18) benign(0.001) TCGA-CV-6934-01 7 97821898 97821898 C T LMTK2 Silent p.H707H 0.16 TCGA-CV-6934-01 8 133925427 133925427 C A TG Missense_Mutation p.T1432N 0.21 tolerated(0.13) possibly_damaging(0.649) TCGA-CV-6934-01 8 144680434 144680436 GAG - TIGD5 In_Frame_Del p.E123del 0.22 TCGA-CV-6934-01 8 77763207 77763207 G C ZFHX4 Silent p.P1350P 0.20 TCGA-CV-6934-01 8 8869134 8869134 G T ERI1 Missense_Mutation p.D124Y 0.35 deleterious(0.01) possibly_damaging(0.656) TCGA-CV-6934-01 8 90949281 90949281 T C NBN Missense_Mutation p.E736G 0.13 deleterious(0) probably_damaging(1) TCGA-CV-6934-01 8 95839504 95839504 G A INTS8 Missense_Mutation p.V107I 0.36 tolerated(0.41) probably_damaging(0.993) TCGA-CV-6934-01 9 135554721 135554722 - T GTF3C4 Frame_Shift_Ins p.W574Lfs*4 0.16 TCGA-CV-6934-01 9 74364981 74364981 T C TMEM2 Missense_Mutation p.I103M 0.17 deleterious(0.01) possibly_damaging(0.753) TCGA-CV-6934-01 X 107393409 107393409 A G ATG4A Missense_Mutation p.H281R 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-6934-01 X 135430046 135430046 T C GPR112 Missense_Mutation p.V1394A 0.22 tolerated(0.16) benign(0.057) TCGA-CV-6934-01 X 151283638 151283638 T G RP11-1007I13.4 RNA 0.21 TCGA-CV-6934-01 X 43698134 43698134 G A MAOB Missense_Mutation p.R87C 0.18 tolerated(0.05) benign(0.015) TCGA-CV-6934-01 X 50052074 50052074 C G CCNB3 Missense_Mutation p.P302R 0.09 deleterious(0.01) benign(0.358) TCGA-CV-6935-01 10 102050202 102050202 C A PKD2L1 Missense_Mutation p.E694D 0.23 tolerated(0.35) benign(0.002) TCGA-CV-6935-01 10 102241771 102241771 G A WNT8B Missense_Mutation p.R157Q 0.33 tolerated(0.13) benign(0.317) TCGA-CV-6935-01 10 105893540 105893540 A G WDR96 Silent p.T1478T 0.29 TCGA-CV-6935-01 10 15828592 15828592 C A FAM188A Missense_Mutation p.G362C 0.32 deleterious(0.01) possibly_damaging(0.907) TCGA-CV-6935-01 10 24727394 24727394 A G KIAA1217 Missense_Mutation p.N278D 0.43 deleterious(0.01) probably_damaging(0.917) TCGA-CV-6935-01 10 43015849 43015849 G A ZNF37BP RNA 0.34 TCGA-CV-6935-01 10 47087602 47087602 C A NPY4R Silent p.A273A 0.18 TCGA-CV-6935-01 10 50945898 50945898 T A OGDHL Missense_Mutation p.I842F 0.39 deleterious(0.03) possibly_damaging(0.553) TCGA-CV-6935-01 10 56106133 56106133 C A PCDH15 Missense_Mutation p.D196Y 0.31 deleterious(0.01) possibly_damaging(0.515) TCGA-CV-6935-01 10 63661466 63661466 G A ARID5B 5'UTR 0.48 TCGA-CV-6935-01 10 88836358 88836358 C T GLUD1 Silent p.L167L 0.40 TCGA-CV-6935-01 11 102818711 102818711 C G MMP13 Missense_Mutation p.G374R 0.57 deleterious(0) possibly_damaging(0.862) TCGA-CV-6935-01 11 105789531 105789531 G C GRIA4 Missense_Mutation p.A455P 0.71 deleterious(0) probably_damaging(0.991) TCGA-CV-6935-01 11 1263788 1263788 C A MUC5B Missense_Mutation p.S1893Y 0.37 unknown(0) TCGA-CV-6935-01 11 22301128 22301128 G T ANO5 Missense_Mutation p.M853I 0.30 tolerated(0.2) benign(0.422) TCGA-CV-6935-01 11 46908046 46908046 T C LRP4 Missense_Mutation p.I752V 0.43 tolerated(0.13) benign(0.074) TCGA-CV-6935-01 11 48267430 48267430 A G OR4X2 Missense_Mutation p.I259V 0.45 tolerated(0.51) benign(0.004) TCGA-CV-6935-01 11 48511249 48511249 G T OR4A47 Missense_Mutation p.R302I 0.35 deleterious_low_confidence(0) benign(0.379) TCGA-CV-6935-01 11 51515722 51515722 G T OR4C46 Missense_Mutation p.W147C 0.37 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CV-6935-01 11 56019812 56019812 G C OR5T3 Missense_Mutation p.G46A 0.38 deleterious(0) probably_damaging(0.956) TCGA-CV-6935-01 11 56380788 56380788 C T OR5M1 Missense_Mutation p.G64D 0.36 deleterious(0) possibly_damaging(0.493) TCGA-CV-6935-01 11 6007529 6007529 G T OR52L1 Missense_Mutation p.T211K 0.36 tolerated(0.19) probably_damaging(1) TCGA-CV-6935-01 11 6643935 6643935 C T DCHS1 Missense_Mutation p.R2991Q 0.50 deleterious(0.03) benign(0.029) TCGA-CV-6935-01 11 67410230 67410230 G T ACY3 Missense_Mutation p.P309T 0.32 tolerated(0.06) possibly_damaging(0.617) TCGA-CV-6935-01 11 68154175 68154175 G A LRP5 Silent p.V469V 0.36 TCGA-CV-6935-01 11 72946311 72946311 C G P2RY2 Missense_Mutation p.S369R 0.57 tolerated_low_confidence(0.14) benign(0.055) TCGA-CV-6935-01 11 73101965 73101965 G T RELT Missense_Mutation p.G96W 0.55 deleterious(0) probably_damaging(0.993) TCGA-CV-6935-01 11 74800246 74800246 C G OR2AT4 Missense_Mutation p.M171I 0.74 deleterious(0.03) benign(0.02) TCGA-CV-6935-01 11 7818034 7818034 A G OR5P2 Silent p.A152A 0.41 TCGA-CV-6935-01 11 8737301 8737301 C T ST5 Missense_Mutation p.R565Q 0.34 tolerated(0.09) possibly_damaging(0.787) TCGA-CV-6935-01 12 112622228 112622228 G A HECTD4 Silent p.A3368A 0.91 TCGA-CV-6935-01 12 11546873 11546873 G T PRB2 Missense_Mutation p.P47T 0.44 tolerated_low_confidence(0.63) unknown(0) TCGA-CV-6935-01 12 121438953 121438953 C A HNF1A Silent p.I618I 0.67 TCGA-CV-6935-01 12 31435799 31435799 C T FAM60A Silent p.K171K 0.37 TCGA-CV-6935-01 12 39947723 39947723 C G ABCD2 Missense_Mutation p.E738D 0.36 tolerated_low_confidence(0.27) benign(0.001) TCGA-CV-6935-01 12 4479741 4479742 CG A FGF23 Frame_Shift_Del p.R175Cfs*16 0.35 TCGA-CV-6935-01 12 89745444 89745444 C T DUSP6 Missense_Mutation p.E125K 0.75 deleterious(0.02) benign(0.193) TCGA-CV-6935-01 12 91502199 91502199 G C LUM Silent p.L186L 0.77 TCGA-CV-6935-01 13 110828798 110828798 C T COL4A1 Missense_Mutation p.G1011R 0.35 probably_damaging(1) TCGA-CV-6935-01 13 19997193 19997193 C T TPTE2 3'UTR 0.69 TCGA-CV-6935-01 13 26911771 26911771 G C CDK8 Missense_Mutation p.E66Q 0.36 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 13 37524134 37524134 C T ALG5 Missense_Mutation p.R307Q 0.31 tolerated(0.18) probably_damaging(0.966) TCGA-CV-6935-01 13 39446956 39446956 G T FREM2 Silent p.G2687G 0.36 TCGA-CV-6935-01 13 47409480 47409480 G A HTR2A Missense_Mutation p.P303L 0.42 tolerated(0.4) benign(0.001) TCGA-CV-6935-01 13 99364806 99364806 A G SLC15A1 Silent p.S252S 0.29 TCGA-CV-6935-01 13 99452600 99452600 G A DOCK9 Missense_Mutation p.S1967L 0.34 tolerated(0.32) benign(0.093) TCGA-CV-6935-01 14 20216179 20216179 T A OR4Q3 Missense_Mutation p.V198E 0.40 deleterious(0) possibly_damaging(0.701) TCGA-CV-6935-01 14 21969087 21969087 C T METTL3 Missense_Mutation p.D362N 0.57 tolerated(0.15) benign(0.017) TCGA-CV-6935-01 14 65194605 65194605 C T PLEKHG3 Missense_Mutation p.P86S 0.58 tolerated(0.35) benign(0.004) TCGA-CV-6935-01 15 101567909 101567909 G T LRRK1 Missense_Mutation p.D865Y 0.65 deleterious(0.01) probably_damaging(0.96) TCGA-CV-6935-01 15 22473030 22473030 G T IGHV4OR15-8 Missense_Mutation p.P81T 0.29 deleterious(0.02) benign(0.319) TCGA-CV-6935-01 15 22956494 22956494 G C CYFIP1 Missense_Mutation p.K577N 0.68 deleterious(0.01) possibly_damaging(0.776) TCGA-CV-6935-01 15 24923926 24923926 C G NPAP1 Missense_Mutation p.A971G 0.64 tolerated(0.07) possibly_damaging(0.643) TCGA-CV-6935-01 15 25438354 25438354 C G SNORD115-11 3'Flank 0.74 TCGA-CV-6935-01 15 33954863 33954863 G C RYR3 Missense_Mutation p.R1711P 0.57 probably_damaging(0.987) TCGA-CV-6935-01 15 48434437 48434437 C T SLC24A5 Silent p.D464D 0.67 TCGA-CV-6935-01 15 48818391 48818391 G A FBN1 Silent p.V308V 0.83 TCGA-CV-6935-01 15 77474169 77474169 C T PEAK1 Missense_Mutation p.E34K 0.05 deleterious(0.02) probably_damaging(0.975) TCGA-CV-6935-01 15 83926817 83926817 C T BNC1 Missense_Mutation p.E788K 0.37 tolerated(0.78) benign(0.08) TCGA-CV-6935-01 15 86124699 86124699 G A AKAP13 Missense_Mutation p.V1134M 0.78 tolerated_low_confidence(0.07) benign(0.438) TCGA-CV-6935-01 16 10274094 10274094 G T GRIN2A Missense_Mutation p.Q59K 0.35 tolerated(0.38) benign(0.013) TCGA-CV-6935-01 16 19127024 19127026 TGC - ITPRIPL2 In_Frame_Del p.L416del 0.45 TCGA-CV-6935-01 16 24980081 24980081 C A ARHGAP17 Missense_Mutation p.E95D 0.40 tolerated(0.26) benign(0.09) TCGA-CV-6935-01 16 28917494 28917494 G A RABEP2 Silent p.C423C 0.42 TCGA-CV-6935-01 16 29888756 29888756 A T SEZ6L2 Missense_Mutation p.L582Q 0.28 deleterious(0) probably_damaging(0.942) TCGA-CV-6935-01 16 31105904 31105904 G A VKORC1 Silent p.I49I 0.52 TCGA-CV-6935-01 16 46766447 46766447 C A MYLK3 Missense_Mutation p.G379W 0.33 tolerated(0.06) benign(0.007) TCGA-CV-6935-01 16 66603837 66603837 A T CMTM1 Splice_Site p.X145_splice 0.36 TCGA-CV-6935-01 16 70499039 70499039 C T FUK Missense_Mutation p.S82F 0.46 deleterious(0.01) benign(0.444) TCGA-CV-6935-01 16 72188112 72188112 C T PMFBP1 Missense_Mutation p.E138K 0.38 tolerated(0.1) probably_damaging(0.969) TCGA-CV-6935-01 16 74386247 74386247 C A RP11-252A24.2 RNA 0.20 TCGA-CV-6935-01 16 84690944 84690944 G C KLHL36 Silent p.T177T 0.39 TCGA-CV-6935-01 16 85946795 85946795 G T IRF8 Missense_Mutation p.C169F 0.35 deleterious(0.01) benign(0.429) TCGA-CV-6935-01 17 10351339 10351339 G A MYH4 Silent p.L1587L 0.04 TCGA-CV-6935-01 17 13977709 13977709 A G COX10 Missense_Mutation p.H38R 0.38 tolerated_low_confidence(0.43) benign(0.001) TCGA-CV-6935-01 17 21731491 21731491 C A UBBP4 Missense_Mutation p.P189H 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-CV-6935-01 17 34266465 34266465 G T LYZL6 5'UTR 0.26 TCGA-CV-6935-01 17 38249328 38249328 C A THRA Missense_Mutation p.P389Q 0.36 deleterious_low_confidence(0.01) benign(0.058) TCGA-CV-6935-01 17 58024140 58024140 G C RPS6KB1 Missense_Mutation p.M523I 0.41 deleterious_low_confidence(0.04) probably_damaging(0.914) TCGA-CV-6935-01 17 73657115 73657115 C G RECQL5 Missense_Mutation p.Q302H 0.11 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 17 7577557 7577557 A T TP53 Missense_Mutation p.C242S 0.75 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 18 13621229 13621229 C T LDLRAD4 Missense_Mutation p.R99C 0.79 deleterious(0) probably_damaging(0.95) TCGA-CV-6935-01 18 22056718 22056718 A T HRH4 Missense_Mutation p.Y122F 0.14 deleterious(0.01) possibly_damaging(0.698) TCGA-CV-6935-01 18 22804737 22804737 C A ZNF521 Missense_Mutation p.G1049W 0.47 deleterious(0.04) possibly_damaging(0.598) TCGA-CV-6935-01 18 67614187 67614187 G A CD226 Silent p.T55T 0.57 TCGA-CV-6935-01 18 7079974 7079974 C G LAMA1 Missense_Mutation p.Q115H 0.12 deleterious(0) probably_damaging(0.994) TCGA-CV-6935-01 19 10221511 10221511 C T PPAN Silent p.F390F 0.31 TCGA-CV-6935-01 19 10665770 10665770 G C KRI1 Missense_Mutation p.R598G 0.38 tolerated(0.44) benign(0.001) TCGA-CV-6935-01 19 12155285 12155285 A G ZNF878 Missense_Mutation p.Y311H 0.30 tolerated(0.07) probably_damaging(1) TCGA-CV-6935-01 19 15651373 15651373 C T CYP4F22 Missense_Mutation p.R262W 0.24 tolerated(0.09) benign(0.01) TCGA-CV-6935-01 19 17728564 17728564 G A UNC13A Missense_Mutation p.T1502M 0.41 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 19 39330958 39330959 - G HNRNPL Frame_Shift_Ins p.P338Tfs*56 0.30 TCGA-CV-6935-01 19 40321360 40321360 C T DYRK1B Missense_Mutation p.A43T 0.41 deleterious(0.02) benign(0.15) TCGA-CV-6935-01 19 44680226 44680226 C T ZNF226 Nonsense_Mutation p.Q271* 0.35 TCGA-CV-6935-01 19 44778658 44778658 G T ZNF233 Silent p.T615T 0.39 TCGA-CV-6935-01 19 44832694 44832694 C G ZNF112 Missense_Mutation p.R545T 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-6935-01 19 55396680 55396680 C A FCAR Nonsense_Mutation p.S35* 0.37 TCGA-CV-6935-01 19 5598876 5598876 C G SAFB2 Silent p.R570R 0.36 TCGA-CV-6935-01 19 57646307 57646307 C T ZIM3 Silent p.Q466Q 0.41 TCGA-CV-6935-01 19 5786796 5786796 C T DUS3L Missense_Mutation p.E484K 0.36 tolerated(0.26) benign(0.038) TCGA-CV-6935-01 19 58265188 58265188 C A ZNF776 Silent p.L230L 0.34 TCGA-CV-6935-01 19 9000496 9000496 C A MUC16 Missense_Mutation p.M13496I 0.33 possibly_damaging(0.884) TCGA-CV-6935-01 19 9577562 9577562 G A ZNF560 Silent p.N687N 0.38 TCGA-CV-6935-01 1 100327061 100327061 T C AGL Missense_Mutation p.Y29H 0.55 tolerated(0.36) benign(0.077) TCGA-CV-6935-01 1 114216018 114216018 G A MAGI3 Silent p.E1040E 0.62 TCGA-CV-6935-01 1 12955542 12955542 A C PRAMEF10 Missense_Mutation p.M46R 0.59 tolerated(1) benign(0) TCGA-CV-6935-01 1 147416146 147416146 T C GPR89B Missense_Mutation p.W117R 0.54 deleterious(0) possibly_damaging(0.809) TCGA-CV-6935-01 1 149905389 149905389 C T MTMR11 Missense_Mutation p.D299N 0.23 deleterious(0.04) possibly_damaging(0.848) TCGA-CV-6935-01 1 151315026 151315026 G C RFX5 Nonsense_Mutation p.S496* 0.30 TCGA-CV-6935-01 1 152280167 152280167 A G FLG Missense_Mutation p.S2399P 0.07 benign(0.307) TCGA-CV-6935-01 1 154034118 154034118 C T NUP210L Missense_Mutation p.G863R 0.34 deleterious(0.01) probably_damaging(0.97) TCGA-CV-6935-01 1 158669597 158669597 C G OR6K2 Missense_Mutation p.L282F 0.23 tolerated(0.07) benign(0.424) TCGA-CV-6935-01 1 15956910 15956910 C T DDI2 Missense_Mutation p.S120L 0.69 tolerated(0.32) benign(0) TCGA-CV-6935-01 1 161022564 161022564 G A ARHGAP30 Nonsense_Mutation p.R230* 0.39 TCGA-CV-6935-01 1 161719654 161719654 C T DUSP12 Silent p.V21V 0.20 TCGA-CV-6935-01 1 16380200 16380200 A G CLCNKB Silent p.P563P 0.49 TCGA-CV-6935-01 1 169390813 169390813 C T CCDC181 Missense_Mutation p.E286K 0.26 tolerated(0.07) possibly_damaging(0.789) TCGA-CV-6935-01 1 170688866 170688866 G C PRRX1 Splice_Site p.X81_splice 0.40 TCGA-CV-6935-01 1 171509618 171509618 G T PRRC2C Nonsense_Mutation p.E1003* 0.52 TCGA-CV-6935-01 1 175362961 175362962 - A TNR Frame_Shift_Ins p.F438Lfs*18 0.33 TCGA-CV-6935-01 1 181680164 181680164 A G CACNA1E Missense_Mutation p.E377G 0.28 deleterious(0) benign(0.403) TCGA-CV-6935-01 1 185276680 185276680 G C IVNS1ABP Missense_Mutation p.Q158E 0.27 tolerated(0.22) benign(0.262) TCGA-CV-6935-01 1 185946936 185946936 C T HMCN1 Nonsense_Mutation p.Q797* 0.44 TCGA-CV-6935-01 1 197390341 197390355 AGATGGCCAGCATGG - CRB1 In_Frame_Del p.D462_G466del 0.40 TCGA-CV-6935-01 1 237660034 237660034 G C RYR2 Missense_Mutation p.G729R 0.24 probably_damaging(1) TCGA-CV-6935-01 1 237865319 237865319 T A RYR2 Missense_Mutation p.L3137I 0.67 benign(0.145) TCGA-CV-6935-01 1 240370643 240370643 C T FMN2 Missense_Mutation p.S844F 0.53 unknown(0) TCGA-CV-6935-01 1 240964780 240964780 G C RGS7 Missense_Mutation p.S463C 0.34 deleterious(0.02) benign(0.326) TCGA-CV-6935-01 1 245849620 245849620 G T KIF26B Missense_Mutation p.G1112V 0.30 tolerated(0.17) unknown(0) TCGA-CV-6935-01 1 248039833 248039833 C T TRIM58 3'UTR 0.47 TCGA-CV-6935-01 1 248569514 248569514 C A OR2T1 Silent p.T73T 0.52 TCGA-CV-6935-01 1 248637225 248637225 C T OR2T3 Missense_Mutation p.L192F 0.55 deleterious(0) probably_damaging(0.999) TCGA-CV-6935-01 1 248637239 248637239 C G OR2T3 Missense_Mutation p.D196E 0.28 deleterious(0.01) possibly_damaging(0.636) TCGA-CV-6935-01 1 40030930 40030930 C A PABPC4 Missense_Mutation p.V365F 0.62 deleterious(0) probably_damaging(0.972) TCGA-CV-6935-01 1 47717390 47717390 G A STIL Silent p.S1095S 0.62 TCGA-CV-6935-01 1 54562036 54562036 C T TCEANC2 Missense_Mutation p.R173W 0.61 deleterious(0) probably_damaging(0.999) TCGA-CV-6935-01 1 66081724 66081724 C T LEPR Nonsense_Mutation p.Q677* 0.47 TCGA-CV-6935-01 1 75037100 75037100 C A C1orf173 Missense_Mutation p.G1432C 0.63 deleterious(0.01) probably_damaging(0.964) TCGA-CV-6935-01 20 7895010 7895010 C T HAO1 Missense_Mutation p.E116K 0.28 deleterious(0.01) probably_damaging(1) TCGA-CV-6935-01 21 26960033 26960033 G A MRPL39 Silent p.L346L 0.27 TCGA-CV-6935-01 21 31709388 31709388 C A KRTAP27-1 Missense_Mutation p.G200V 0.32 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 21 32253706 32253706 G T KRTAP11-1 Missense_Mutation p.F46L 0.37 tolerated(0.23) benign(0.063) TCGA-CV-6935-01 21 32554912 32554912 C T TIAM1 Missense_Mutation p.A905T 0.07 tolerated(0.63) benign(0.001) TCGA-CV-6935-01 21 45076541 45076541 T A HSF2BP Silent p.I38I 0.44 TCGA-CV-6935-01 21 47552400 47552400 C A COL6A2 Missense_Mutation p.H998Q 0.27 tolerated(0.08) benign(0) TCGA-CV-6935-01 22 23241819 23241819 C A IGLL5 3'Flank 0.46 TCGA-CV-6935-01 22 26242186 26242186 C A MYO18B Missense_Mutation p.T1163N 0.41 deleterious(0) probably_damaging(0.937) TCGA-CV-6935-01 22 26242187 26242187 C A MYO18B Silent p.T1163T 0.41 TCGA-CV-6935-01 2 143913079 143913079 C G ARHGAP15 Missense_Mutation p.S7C 0.36 tolerated(0.18) benign(0.001) TCGA-CV-6935-01 2 143913203 143913203 T C ARHGAP15 Silent p.D48D 0.53 TCGA-CV-6935-01 2 155711512 155711512 A G KCNJ3 Missense_Mutation p.K398R 0.41 tolerated(0.73) benign(0.003) TCGA-CV-6935-01 2 163279766 163279766 G C KCNH7 Intron 0.26 TCGA-CV-6935-01 2 165986510 165986510 G T SCN3A Silent p.V954V 0.57 TCGA-CV-6935-01 2 178098973 178098973 C G NFE2L2 Missense_Mutation p.W24C 0.45 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 2 179465721 179465721 C A TTN Missense_Mutation p.R18637L 0.56 TCGA-CV-6935-01 2 179596593 179596593 C G TTN Missense_Mutation p.W5670S 0.21 TCGA-CV-6935-01 2 186670222 186670223 - T FSIP2 Frame_Shift_Ins p.S5488Ffs*16 0.18 TCGA-CV-6935-01 2 197538986 197538986 A G CCDC150 Missense_Mutation p.K351E 0.44 tolerated(0.37) benign(0.079) TCGA-CV-6935-01 2 201468754 201468754 C G AOX1 Silent p.L201L 0.52 TCGA-CV-6935-01 2 207170044 207170044 G C ZDBF2 Missense_Mutation p.M264I 0.54 tolerated(1) benign(0) TCGA-CV-6935-01 2 210893657 210893657 A C KANSL1L Missense_Mutation p.Y770D 0.40 deleterious(0) probably_damaging(0.943) TCGA-CV-6935-01 2 211473158 211473158 G A CPS1 Missense_Mutation p.G762R 0.47 tolerated(0.25) benign(0.291) TCGA-CV-6935-01 2 21228818 21228818 G T APOB Missense_Mutation p.S3641Y 0.35 benign(0.044) TCGA-CV-6935-01 2 218751275 218751275 T A TNS1 Missense_Mutation p.N196Y 0.75 deleterious(0) possibly_damaging(0.698) TCGA-CV-6935-01 2 220164922 220164922 G - PTPRN Frame_Shift_Del p.M408Cfs*33 0.44 TCGA-CV-6935-01 2 32728276 32728276 G A BIRC6 Missense_Mutation p.E3158K 0.29 probably_damaging(0.986) TCGA-CV-6935-01 2 80529897 80529897 C A LRRTM1 Missense_Mutation p.G350C 0.39 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 2 8936972 8936972 T C KIDINS220 Missense_Mutation p.T343A 0.34 deleterious(0.05) probably_damaging(0.999) TCGA-CV-6935-01 2 90139424 90139424 C A IGKV1D-16 Silent p.A65A 0.32 TCGA-CV-6935-01 2 99797327 99797327 C T MITD1 Missense_Mutation p.E40K 0.37 deleterious(0.01) benign(0.424) TCGA-CV-6935-01 3 108778707 108778707 T G MORC1 Missense_Mutation p.Q326P 0.11 tolerated(0.06) benign(0.024) TCGA-CV-6935-01 3 126736700 126736700 G A PLXNA1 Missense_Mutation p.E1209K 0.24 tolerated(0.07) probably_damaging(0.979) TCGA-CV-6935-01 3 130698095 130698095 C T ATP2C1 Missense_Mutation p.L559F 0.04 deleterious(0.01) probably_damaging(0.959) TCGA-CV-6935-01 3 155203145 155203145 C T PLCH1 Missense_Mutation p.A1000T 0.21 deleterious_low_confidence(0.03) benign(0.003) TCGA-CV-6935-01 3 170716928 170716928 G T SLC2A2 Missense_Mutation p.R366S 0.27 deleterious(0) probably_damaging(0.996) TCGA-CV-6935-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.27 TCGA-CV-6935-01 3 51400017 51400017 G A DOCK3 Silent p.S1735S 0.63 TCGA-CV-6935-01 3 73432909 73432909 C A PDZRN3 Missense_Mutation p.R936S 0.58 deleterious(0) probably_damaging(0.999) TCGA-CV-6935-01 3 97852283 97852283 G T OR5H1 Missense_Mutation p.V248F 0.21 deleterious(0) probably_damaging(0.99) TCGA-CV-6935-01 4 134072226 134072226 G C PCDH10 Missense_Mutation p.E311Q 0.60 tolerated(0.05) probably_damaging(0.999) TCGA-CV-6935-01 4 164272687 164272687 A G NPY5R Missense_Mutation p.N421S 0.70 deleterious(0) probably_damaging(0.999) TCGA-CV-6935-01 4 65147243 65147243 G A TECRL Silent p.N289N 0.67 TCGA-CV-6935-01 4 88344060 88344060 G A NUDT9 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) benign(0.445) TCGA-CV-6935-01 5 102423676 102423676 C A GIN1 Missense_Mutation p.D499Y 0.36 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-CV-6935-01 5 112151205 112151205 G A APC Missense_Mutation p.R283Q 0.37 benign(0.015) TCGA-CV-6935-01 5 113831815 113831815 G T KCNN2 Missense_Mutation p.R559L 0.30 tolerated_low_confidence(0.53) unknown(0) TCGA-CV-6935-01 5 13719184 13719184 G T DNAH5 Nonsense_Mutation p.C4102* 0.43 TCGA-CV-6935-01 5 140627413 140627413 C A PCDHB15 Missense_Mutation p.T756K 0.38 deleterious_low_confidence(0.02) benign(0.028) TCGA-CV-6935-01 5 140718609 140718609 G T PCDHGA2 Missense_Mutation p.W24L 0.31 tolerated_low_confidence(0.13) benign(0.003) TCGA-CV-6935-01 5 140751081 140751081 C A PCDHGB3 Missense_Mutation p.L374I 0.23 deleterious(0.02) benign(0.103) TCGA-CV-6935-01 5 140784798 140784798 C A PCDHGA9 Missense_Mutation p.T760N 0.33 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-CV-6935-01 5 140797510 140797510 G T PCDHGB7 Silent p.T28T 0.36 TCGA-CV-6935-01 5 15616151 15616151 A G FBXL7 Missense_Mutation p.K33E 0.30 tolerated(0.16) benign(0.017) TCGA-CV-6935-01 5 168006280 168006280 G A PANK3 Silent p.I3I 0.38 TCGA-CV-6935-01 5 171488156 171488156 C A STK10 Missense_Mutation p.Q733H 0.33 tolerated(0.23) possibly_damaging(0.759) TCGA-CV-6935-01 5 26885803 26885803 G T CDH9 Missense_Mutation p.T601N 0.22 tolerated(1) benign(0) TCGA-CV-6935-01 5 39376143 39376143 C G DAB2 Missense_Mutation p.E735Q 0.32 deleterious(0.05) probably_damaging(0.971) TCGA-CV-6935-01 5 637653 637653 C T CEP72 Missense_Mutation p.S309L 0.36 tolerated(0.09) benign(0.006) TCGA-CV-6935-01 5 66429471 66429471 A G MAST4 Silent p.K741K 0.35 TCGA-CV-6935-01 6 117683782 117683782 C A ROS1 Missense_Mutation p.C1122F 0.32 tolerated(0.52) benign(0.048) TCGA-CV-6935-01 6 117709005 117709005 G A ROS1 Missense_Mutation p.A651V 0.41 deleterious(0) probably_damaging(0.998) TCGA-CV-6935-01 6 128222065 128222065 G T THEMIS Missense_Mutation p.L5M 0.43 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 6 132061454 132061454 C T ENPP3 Silent p.C797C 0.38 TCGA-CV-6935-01 6 13273294 13273294 G C TBC1D7 Intron 0.33 TCGA-CV-6935-01 6 133777689 133777689 C T EYA4 Intron 0.36 TCGA-CV-6935-01 6 138601217 138601217 G A KIAA1244 Missense_Mutation p.V793M 0.50 deleterious(0) probably_damaging(0.989) TCGA-CV-6935-01 6 165957010 165957010 C A PDE10A Missense_Mutation p.Q38H 0.40 tolerated(0.08) benign(0.332) TCGA-CV-6935-01 6 26597372 26597372 G T ABT1 Silent p.P54P 0.33 TCGA-CV-6935-01 6 30297275 30297275 G A TRIM39 Missense_Mutation p.E61K 0.36 tolerated(0.72) benign(0.403) TCGA-CV-6935-01 6 31975532 31975532 C T AL645922.1 5'Flank 0.47 TCGA-CV-6935-01 6 32154610 32154610 C T PBX2 Missense_Mutation p.D365N 0.36 deleterious(0.03) possibly_damaging(0.576) TCGA-CV-6935-01 6 41029194 41029194 C A APOBEC2 Silent p.R87R 0.30 TCGA-CV-6935-01 6 55113511 55113511 G T HCRTR2 Missense_Mutation p.D100Y 0.34 deleterious(0) probably_damaging(1) TCGA-CV-6935-01 6 70856592 70856592 A T COL19A1 Silent p.P604P 0.29 TCGA-CV-6935-01 6 88763681 88763681 G C SPACA1 Missense_Mutation p.V76L 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.686) TCGA-CV-6935-01 7 100551864 100551864 C G MUC3A Silent p.L205L 0.13 TCGA-CV-6935-01 7 116339752 116339752 A G MET Missense_Mutation p.Y205C 0.43 tolerated(0.17) possibly_damaging(0.754) TCGA-CV-6935-01 7 126544151 126544151 T C GRM8 Missense_Mutation p.N298S 0.40 deleterious(0.02) possibly_damaging(0.468) TCGA-CV-6935-01 7 141536336 141536336 C A PRSS37 Splice_Site p.X190_splice 0.75 TCGA-CV-6935-01 7 141755884 141755884 A C MGAM Missense_Mutation p.S1190R 0.73 deleterious(0) probably_damaging(0.999) TCGA-CV-6935-01 7 151699803 151699803 T A GALNTL5 Missense_Mutation p.D221E 0.65 tolerated(0.52) benign(0.366) TCGA-CV-6935-01 7 23750000 23750000 G C STK31 Intron 0.24 TCGA-CV-6935-01 7 23827673 23827673 A G STK31 Silent p.S854S 0.26 TCGA-CV-6935-01 7 23871841 23871841 C T STK31 Silent p.F972F 0.52 TCGA-CV-6935-01 7 37960281 37960281 G T EPDR1 5'UTR 0.45 TCGA-CV-6935-01 7 38402465 38402465 C A TRGV2 Silent p.G118G 0.52 TCGA-CV-6935-01 7 41739824 41739824 G T INHBA Missense_Mutation p.S50Y 0.41 tolerated(0.16) benign(0.353) TCGA-CV-6935-01 7 57529071 57529071 G T ZNF716 Missense_Mutation p.G302C 0.32 deleterious(0.01) probably_damaging(0.958) TCGA-CV-6935-01 7 64452342 64452342 C A ERV3-1 Missense_Mutation p.D355Y 0.29 tolerated(0.08) possibly_damaging(0.633) TCGA-CV-6935-01 7 71142291 71142291 G T WBSCR17 Missense_Mutation p.Q500H 0.35 deleterious(0) probably_damaging(0.992) TCGA-CV-6935-01 7 82582174 82582174 G T PCLO Missense_Mutation p.P2699T 0.28 unknown(0) TCGA-CV-6935-01 7 88847532 88847532 G T ZNF804B Nonsense_Mutation p.E58* 0.47 TCGA-CV-6935-01 7 92887685 92887685 G T CCDC132 Missense_Mutation p.R186L 0.27 deleterious(0) probably_damaging(0.988) TCGA-CV-6935-01 7 94791279 94791279 G A PPP1R9A Missense_Mutation p.V584I 0.62 deleterious(0) probably_damaging(0.972) TCGA-CV-6935-01 7 98581764 98581764 A G TRRAP Missense_Mutation p.N3028S 0.39 benign(0.173) TCGA-CV-6935-01 8 105235910 105235910 G T RIMS2 Intron 0.32 TCGA-CV-6935-01 8 110451290 110451290 G A PKHD1L1 Missense_Mutation p.E1309K 0.37 tolerated(0.44) benign(0.289) TCGA-CV-6935-01 8 110476802 110476802 C A PKHD1L1 Missense_Mutation p.H2581N 0.41 deleterious(0) probably_damaging(0.995) TCGA-CV-6935-01 8 113246662 113246662 G T CSMD3 Missense_Mutation p.L3558I 0.33 deleterious(0.01) benign(0.028) TCGA-CV-6935-01 8 113697930 113697930 C A CSMD3 Missense_Mutation p.M729I 0.29 tolerated(0.06) possibly_damaging(0.828) TCGA-CV-6935-01 8 123965602 123965602 T C ZHX2 Missense_Mutation p.S618P 0.33 tolerated(0.17) benign(0.355) TCGA-CV-6935-01 8 127569206 127569206 C T FAM84B Silent p.V143V 0.13 TCGA-CV-6935-01 8 139151251 139151251 G C FAM135B Silent p.L1293L 0.08 TCGA-CV-6935-01 8 139165165 139165165 C A FAM135B Missense_Mutation p.C518F 0.19 tolerated(0.91) benign(0.002) TCGA-CV-6935-01 8 143994844 143994844 C A CYP11B2 Silent p.T326T 0.15 TCGA-CV-6935-01 8 144658323 144658323 C A NAPRT1 Silent p.V344V 0.34 TCGA-CV-6935-01 8 145016653 145016653 G T PLEC Intron 0.64 TCGA-CV-6935-01 8 26149292 26149292 G A PPP2R2A 5'Flank 0.19 TCGA-CV-6935-01 8 72754902 72754902 G T MSC Silent p.T205T 0.39 TCGA-CV-6935-01 8 87060915 87060915 C G PSKH2 Missense_Mutation p.G312R 0.42 tolerated(0.43) benign(0.088) TCGA-CV-6935-01 8 89339533 89339533 G T MMP16 5'UTR 0.38 TCGA-CV-6935-01 8 95174380 95174380 G T CDH17 Silent p.T431T 0.30 TCGA-CV-6935-01 9 104133542 104133542 G A BAAT Missense_Mutation p.H49Y 0.30 tolerated(0.76) benign(0) TCGA-CV-6935-01 9 125315511 125315511 G C OR1N2 Silent p.V21V 0.38 TCGA-CV-6935-01 9 135203353 135203376 CGTGAATTGGGAGTTGAAGTCCTT - SETX In_Frame_Del p.R1203_R1211delinsS 0.37 TCGA-CV-6935-01 9 139301763 139301763 G A SDCCAG3 Missense_Mutation p.P218L 0.55 tolerated(0.07) benign(0.031) TCGA-CV-6935-01 9 139754408 139754408 G A MAMDC4 Silent p.V1088V 0.44 TCGA-CV-6935-01 9 139820570 139820570 G A TRAF2 3'UTR 0.38 TCGA-CV-6935-01 9 140346851 140346851 C G NSMF Missense_Mutation p.G401A 0.33 deleterious(0.01) probably_damaging(1) TCGA-CV-6935-01 9 19316463 19316463 G T DENND4C Silent p.P512P 0.86 TCGA-CV-6935-01 9 43626706 43626706 T A SPATA31A6 Missense_Mutation p.R661W 0.83 deleterious(0.01) possibly_damaging(0.647) TCGA-CV-6935-01 9 71098829 71098829 G T PGM5 Missense_Mutation p.R448S 0.34 tolerated(0.46) benign(0.007) TCGA-CV-6935-01 9 95009669 95009669 G T IARS Missense_Mutation p.F927L 0.32 tolerated(0.11) benign(0.008) TCGA-CV-6935-01 X 100494001 100494001 C T DRP2 Missense_Mutation p.P157L 0.79 tolerated(0.07) probably_damaging(0.986) TCGA-CV-6935-01 X 110491846 110491846 T G CAPN6 Missense_Mutation p.T479P 0.75 tolerated(0.24) probably_damaging(0.961) TCGA-CV-6935-01 X 110924494 110924494 C T ALG13 Silent p.L16L 0.81 TCGA-CV-6935-01 X 142795413 142795413 G T SPANXN2 Missense_Mutation p.L89I 0.77 deleterious(0.03) possibly_damaging(0.832) TCGA-CV-6935-01 X 148072769 148072769 G T AFF2 Missense_Mutation p.M1281I 0.79 deleterious(0) probably_damaging(0.914) TCGA-CV-6935-01 X 21627262 21627262 C G CNKSR2 Missense_Mutation p.S740C 0.76 deleterious(0.01) probably_damaging(0.99) TCGA-CV-6935-01 X 21869684 21869684 A T MBTPS2 Missense_Mutation p.I166F 0.05 deleterious(0.04) probably_damaging(0.949) TCGA-CV-6935-01 X 32328320 32328320 G A DMD Missense_Mutation p.T1999I 0.75 possibly_damaging(0.702) TCGA-CV-6935-01 X 32404497 32404497 G T DMD Missense_Mutation p.T1535K 0.78 probably_damaging(0.936) TCGA-CV-6935-01 X 44938390 44938390 G C KDM6A Splice_Site p.X980_splice 0.92 TCGA-CV-6935-01 X 7023726 7023726 T C HDHD1 Missense_Mutation p.E95G 1.00 deleterious(0.02) benign(0.286) TCGA-CV-6935-01 X 91090459 91090459 G T PCDH11X 5'UTR 0.77 TCGA-CV-6936-01 10 101451214 101451214 G A ENTPD7 Missense_Mutation p.G261E 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-CV-6936-01 10 118394400 118394400 A T PNLIPRP2 Missense_Mutation p.Y289F 0.15 deleterious(0.01) possibly_damaging(0.908) TCGA-CV-6936-01 10 29599073 29599073 C T LYZL1 Silent p.I157I 0.28 TCGA-CV-6936-01 10 62149197 62149197 C T ANK3 Missense_Mutation p.D34N 0.19 benign(0.441) TCGA-CV-6936-01 10 72500862 72500862 C T ADAMTS14 Missense_Mutation p.S626F 0.28 deleterious(0.01) probably_damaging(0.971) TCGA-CV-6936-01 10 82187156 82187156 C G FAM213A Nonsense_Mutation p.Y160* 0.06 TCGA-CV-6936-01 10 95892130 95892130 C T PLCE1 Missense_Mutation p.S469F 0.07 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-CV-6936-01 11 1157901 1157901 G A MUC5AC Missense_Mutation p.G323E 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-CV-6936-01 11 117864051 117864051 G T IL10RA Missense_Mutation p.D155Y 0.10 tolerated(0.05) probably_damaging(0.92) TCGA-CV-6936-01 11 21592401 21592402 - A NELL1 Frame_Shift_Ins p.S692Kfs*21 0.28 TCGA-CV-6936-01 11 40137497 40137497 C T LRRC4C Missense_Mutation p.E116K 0.14 deleterious(0) probably_damaging(0.964) TCGA-CV-6936-01 11 56431302 56431302 C G OR5AR1 Missense_Mutation p.I47M 0.05 tolerated(0.28) benign(0.004) TCGA-CV-6936-01 11 587346 587346 C G PHRF1 Missense_Mutation p.S101C 0.35 deleterious(0) probably_damaging(0.996) TCGA-CV-6936-01 11 60107412 60107418 GGAAACA - MS4A6E Frame_Shift_Del p.W143* 0.26 TCGA-CV-6936-01 11 64428240 64428240 G A NRXN2 Missense_Mutation p.R724W 0.27 deleterious(0.01) benign(0.105) TCGA-CV-6936-01 11 92918982 92918982 T A SLC36A4 Splice_Site p.X19_splice 0.39 TCGA-CV-6936-01 12 101510564 101510564 T C ANO4 Missense_Mutation p.L818P 0.05 deleterious(0.04) benign(0.273) TCGA-CV-6936-01 12 101779782 101779782 A G UTP20 Missense_Mutation p.M2747V 0.30 tolerated(0.17) benign(0.001) TCGA-CV-6936-01 12 102036248 102036248 G A MYBPC1 Silent p.L214L 0.27 TCGA-CV-6936-01 12 108961164 108961164 G C ISCU Intron 0.40 TCGA-CV-6936-01 12 110764234 110764234 C T ATP2A2 Missense_Mutation p.P195L 0.13 deleterious(0.03) possibly_damaging(0.656) TCGA-CV-6936-01 12 123780467 123780467 C G SBNO1 Missense_Mutation p.L1390F 0.03 tolerated_low_confidence(0.48) benign(0) TCGA-CV-6936-01 12 32908286 32908286 C A YARS2 Missense_Mutation p.A175S 0.40 tolerated(0.75) benign(0.001) TCGA-CV-6936-01 12 49392252 49392252 C G DDN Missense_Mutation p.R136P 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-6936-01 12 51851325 51851325 T C SLC4A8 Splice_Site p.X255_splice 0.34 TCGA-CV-6936-01 12 57863427 57863427 C G GLI1 Missense_Mutation p.Q508E 0.15 tolerated(0.05) probably_damaging(0.974) TCGA-CV-6936-01 12 57868406 57868406 C T ARHGAP9 Intron 0.15 TCGA-CV-6936-01 12 77240411 77240413 TTC - ZDHHC17 In_Frame_Del p.F488del 0.14 TCGA-CV-6936-01 12 79689943 79689943 A T SYT1 Missense_Mutation p.K190M 0.33 tolerated(0.08) probably_damaging(0.982) TCGA-CV-6936-01 12 79988212 79988212 T A PAWR Missense_Mutation p.E278V 0.29 deleterious(0) probably_damaging(0.996) TCGA-CV-6936-01 12 81503457 81503457 T A ACSS3 Missense_Mutation p.F144I 0.20 tolerated(1) benign(0) TCGA-CV-6936-01 12 93213152 93213152 G C EEA1 Missense_Mutation p.Q554E 0.15 tolerated(0.17) probably_damaging(0.995) TCGA-CV-6936-01 13 101890129 101890129 G A NALCN Missense_Mutation p.H471Y 0.22 tolerated(1) benign(0.009) TCGA-CV-6936-01 13 113223541 113223541 G A TUBGCP3 Missense_Mutation p.R37W 0.25 deleterious(0) probably_damaging(0.996) TCGA-CV-6936-01 13 20763385 20763385 C T GJB2 Silent p.K112K 0.23 TCGA-CV-6936-01 13 32869543 32869543 C A FRY Nonsense_Mutation p.Y2996* 0.30 TCGA-CV-6936-01 13 32950881 32950881 G A BRCA2 Missense_Mutation p.E2903K 0.16 deleterious(0) probably_damaging(0.96) TCGA-CV-6936-01 13 60544172 60544172 A T DIAPH3 Silent p.T660T 0.47 TCGA-CV-6936-01 13 61068665 61068665 T G TDRD3 Missense_Mutation p.S272A 0.13 tolerated(0.96) benign(0.001) TCGA-CV-6936-01 13 72063278 72063278 C T DACH1 Missense_Mutation p.E527K 0.18 benign(0.169) TCGA-CV-6936-01 13 75873593 75873593 C A TBC1D4 Missense_Mutation p.G1010V 0.40 deleterious(0) probably_damaging(1) TCGA-CV-6936-01 14 105246455 105246455 C T AKT1 Missense_Mutation p.E49K 0.46 tolerated(0.76) possibly_damaging(0.595) TCGA-CV-6936-01 14 20216405 20216405 C A OR4Q3 Silent p.S273S 0.11 TCGA-CV-6936-01 14 23528491 23528491 C - ACIN1 Frame_Shift_Del p.D1298Tfs*119 0.26 TCGA-CV-6936-01 14 23884302 23884302 C G MYH7 Missense_Mutation p.E1821Q 0.13 deleterious(0.02) possibly_damaging(0.751) TCGA-CV-6936-01 14 35593231 35593231 A C KIAA0391 Silent p.V260V 0.31 TCGA-CV-6936-01 14 47504427 47504427 C G MDGA2 Missense_Mutation p.V536L 0.28 deleterious(0.01) possibly_damaging(0.527) TCGA-CV-6936-01 14 58909519 58909519 C T KIAA0586 Missense_Mutation p.S222L 0.14 deleterious(0) probably_damaging(0.999) TCGA-CV-6936-01 14 63175134 63175134 C T KCNH5 Missense_Mutation p.E687K 0.19 deleterious(0) benign(0.007) TCGA-CV-6936-01 14 69701456 69701456 C T EXD2 Missense_Mutation p.L253F 0.24 deleterious(0) probably_damaging(0.94) TCGA-CV-6936-01 14 73959074 73959074 G C HEATR4 Intron 0.24 TCGA-CV-6936-01 14 81972553 81972553 C T SEL1L Missense_Mutation p.E125K 0.23 deleterious_low_confidence(0.05) probably_damaging(0.993) TCGA-CV-6936-01 14 92959967 92959967 G A SLC24A4 Missense_Mutation p.D622N 0.16 deleterious_low_confidence(0.01) benign(0.005) TCGA-CV-6936-01 14 93393037 93393037 C A CHGA Silent p.R61R 0.41 TCGA-CV-6936-01 14 94395169 94395169 G A FAM181A Missense_Mutation p.E242K 0.11 tolerated(0.19) possibly_damaging(0.493) TCGA-CV-6936-01 14 94521392 94521392 C T DDX24 Missense_Mutation p.E710K 0.17 deleterious(0.03) probably_damaging(0.971) TCGA-CV-6936-01 14 94567115 94567115 G C IFI27L1 Missense_Mutation p.G20A 0.17 tolerated(0.18) possibly_damaging(0.472) TCGA-CV-6936-01 14 96757161 96757161 T C ATG2B Silent p.L1897L 0.29 TCGA-CV-6936-01 15 25339225 25339225 G A SNORD116-24 RNA 0.17 TCGA-CV-6936-01 15 25963462 25963462 C A ATP10A Missense_Mutation p.S483I 0.55 deleterious(0.01) possibly_damaging(0.781) TCGA-CV-6936-01 15 43237453 43237453 G A UBR1 3'UTR 0.35 TCGA-CV-6936-01 15 52656782 52656782 T A MYO5A Missense_Mutation p.D1093V 0.31 deleterious(0) benign(0.017) TCGA-CV-6936-01 15 63128147 63128147 C G TLN2 Missense_Mutation p.Q2417E 0.11 deleterious(0) benign(0.208) TCGA-CV-6936-01 15 68489825 68489825 A T CALML4 Missense_Mutation p.L149Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-6936-01 16 14020442 14020442 G A ERCC4 Missense_Mutation p.R138K 0.05 tolerated(0.68) benign(0.016) TCGA-CV-6936-01 16 30100529 30100529 C T TBX6 Missense_Mutation p.R119H 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-6936-01 16 3029673 3029673 A G PKMYT1 5'UTR 0.64 TCGA-CV-6936-01 16 32077573 32077573 C T IGHV3OR16-9 Missense_Mutation p.S63F 0.23 deleterious_low_confidence(0) benign(0.235) TCGA-CV-6936-01 16 57474872 57474872 C T CIAPIN1 5'UTR 0.21 TCGA-CV-6936-01 16 81087678 81087678 A G RP11-303E16.5 5'Flank 0.28 TCGA-CV-6936-01 16 84108251 84108251 T A MBTPS1 Missense_Mutation p.N515I 0.38 deleterious(0) probably_damaging(0.992) TCGA-CV-6936-01 16 87678544 87678544 C T JPH3 Missense_Mutation p.R355W 0.26 deleterious(0) probably_damaging(0.997) TCGA-CV-6936-01 16 88664701 88664701 C T ZC3H18 Silent p.L268L 0.09 TCGA-CV-6936-01 17 10309390 10309390 C G MYH8 Missense_Mutation p.M800I 0.10 deleterious(0.02) benign(0.022) TCGA-CV-6936-01 17 1783840 1783840 G A RPA1 Missense_Mutation p.D366N 0.34 deleterious(0) benign(0.041) TCGA-CV-6936-01 17 18775924 18775924 G T PRPSAP2 Silent p.V67V 0.19 TCGA-CV-6936-01 17 26965108 26965108 C G KIAA0100 Missense_Mutation p.S506T 0.17 tolerated(0.08) probably_damaging(0.958) TCGA-CV-6936-01 17 38938473 38938473 G C KRT27 Silent p.L91L 0.33 TCGA-CV-6936-01 17 41585799 41585799 C T DHX8 Missense_Mutation p.P805S 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-CV-6936-01 17 43480174 43480174 G A ARHGAP27 Missense_Mutation p.S209F 0.32 deleterious(0.02) possibly_damaging(0.479) TCGA-CV-6936-01 17 54450025 54450025 G A ANKFN1 Missense_Mutation p.R210Q 0.13 tolerated(0.12) probably_damaging(0.998) TCGA-CV-6936-01 17 66890418 66890418 T C ABCA8 Missense_Mutation p.R938G 0.33 deleterious(0.03) probably_damaging(0.993) TCGA-CV-6936-01 17 7230539 7230539 C T NEURL4 Silent p.V246V 0.32 TCGA-CV-6936-01 17 73259680 73259680 C G MRPS7 Intron 0.21 TCGA-CV-6936-01 17 7399540 7399540 G C POLR2A Missense_Mutation p.E80Q 0.11 possibly_damaging(0.596) TCGA-CV-6936-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.58 deleterious(0) probably_damaging(0.998) TCGA-CV-6936-01 17 7637808 7637808 C T DNAH2 Missense_Mutation p.R254W 0.19 probably_damaging(0.992) TCGA-CV-6936-01 17 7752018 7752018 C G KDM6B Silent p.L804L 0.10 TCGA-CV-6936-01 17 7794330 7794330 G A CHD3 Missense_Mutation p.E212K 0.29 probably_damaging(0.949) TCGA-CV-6936-01 17 8706467 8706467 C T PIK3R6 3'UTR 0.42 TCGA-CV-6936-01 18 31523045 31523045 C T NOL4 Missense_Mutation p.R509H 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-6936-01 18 32428280 32428280 G A DTNA Missense_Mutation p.R369Q 0.47 tolerated(0.06) benign(0.273) TCGA-CV-6936-01 18 64178908 64178908 G A CDH19 Silent p.I491I 0.38 TCGA-CV-6936-01 19 12461237 12461237 G C ZNF442 Missense_Mutation p.H388D 0.05 tolerated(0.2) probably_damaging(0.93) TCGA-CV-6936-01 19 12969220 12969220 C T MAST1 Silent p.F374F 0.14 TCGA-CV-6936-01 19 21492100 21492100 T A ZNF708 Missense_Mutation p.Q58H 0.26 deleterious(0) possibly_damaging(0.873) TCGA-CV-6936-01 19 21606747 21606747 G C ZNF493 Missense_Mutation p.G429A 0.09 deleterious(0.02) probably_damaging(0.958) TCGA-CV-6936-01 19 23542840 23542840 G A ZNF91 Missense_Mutation p.L981F 0.09 tolerated(0.09) probably_damaging(1) TCGA-CV-6936-01 19 36355599 36355599 G A KIRREL2 Missense_Mutation p.G592E 0.65 tolerated(1) benign(0.001) TCGA-CV-6936-01 19 4282869 4282869 G A SHD Silent p.L100L 0.35 TCGA-CV-6936-01 19 43688992 43688992 G C PSG5 Missense_Mutation p.I124M 0.31 tolerated(0.06) possibly_damaging(0.897) TCGA-CV-6936-01 19 44777511 44777511 C A ZNF233 Missense_Mutation p.A233D 0.24 tolerated(0.09) benign(0.1) TCGA-CV-6936-01 19 45563652 45563652 T A CLASRP Missense_Mutation p.L239H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-6936-01 19 46328447 46328447 C G SYMPK Silent p.L824L 0.08 TCGA-CV-6936-01 19 47503732 47503732 C G ARHGAP35 Missense_Mutation p.I1429M 0.22 deleterious(0) probably_damaging(0.998) TCGA-CV-6936-01 19 50412910 50412910 G C NUP62 Missense_Mutation p.T52R 0.05 tolerated(0.08) benign(0.073) TCGA-CV-6936-01 19 52115506 52115506 G A SIGLEC5 Missense_Mutation p.S545L 0.15 deleterious(0) benign(0.411) TCGA-CV-6936-01 19 8367860 8367860 G A CD320 Silent p.T169T 0.20 TCGA-CV-6936-01 19 9524534 9524534 T G ZNF266 Missense_Mutation p.D356A 0.27 tolerated(0.42) benign(0.345) TCGA-CV-6936-01 1 11140553 11140553 C T EXOSC10 Intron 0.25 TCGA-CV-6936-01 1 111777615 111777615 G C CHI3L2 Missense_Mutation p.G139A 0.08 deleterious(0) probably_damaging(1) TCGA-CV-6936-01 1 151237665 151237665 C G PSMD4 Silent p.L131L 0.06 TCGA-CV-6936-01 1 152327481 152327481 A G FLG2 Silent p.S927S 0.61 TCGA-CV-6936-01 1 153636573 153636573 C G ILF2 Missense_Mutation p.L230F 0.15 deleterious(0.01) possibly_damaging(0.513) TCGA-CV-6936-01 1 154437818 154437818 T G IL6R Missense_Mutation p.Y457D 0.05 deleterious(0) possibly_damaging(0.884) TCGA-CV-6936-01 1 154898882 154898882 G A PMVK Silent p.R130R 0.08 TCGA-CV-6936-01 1 156290786 156290786 C G CCT3 Missense_Mutation p.M151I 0.07 tolerated(0.17) benign(0.003) TCGA-CV-6936-01 1 158641861 158641861 C G SPTA1 Missense_Mutation p.M492I 0.19 tolerated(0.31) possibly_damaging(0.853) TCGA-CV-6936-01 1 16272441 16272441 G C ZBTB17 Intron 0.31 TCGA-CV-6936-01 1 16641805 16641805 C G FBXO42 Missense_Mutation p.E37Q 0.09 deleterious_low_confidence(0.03) benign(0.142) TCGA-CV-6936-01 1 169391472 169391472 G C CCDC181 Missense_Mutation p.S66C 0.08 deleterious(0.01) possibly_damaging(0.58) TCGA-CV-6936-01 1 17397918 17397918 C T PADI2 Missense_Mutation p.E540K 0.30 tolerated(0.2) possibly_damaging(0.794) TCGA-CV-6936-01 1 17662722 17662722 G A PADI4 Splice_Site p.X136_splice 0.22 TCGA-CV-6936-01 1 179562647 179562647 G A TDRD5 Silent p.R95R 0.23 TCGA-CV-6936-01 1 183774372 183774372 G A RGL1 Intron 0.27 TCGA-CV-6936-01 1 186312565 186312565 C T TPR Missense_Mutation p.E1215K 0.17 benign(0.292) TCGA-CV-6936-01 1 19204081 19204081 G A ALDH4A1 Silent p.F322F 0.24 TCGA-CV-6936-01 1 19209163 19209163 G A ALDH4A1 Intron 0.16 TCGA-CV-6936-01 1 192153747 192153747 T A RGS18 3'UTR 0.52 TCGA-CV-6936-01 1 196709904 196709904 C T CFH Missense_Mutation p.H980Y 0.07 deleterious(0.04) benign(0.002) TCGA-CV-6936-01 1 196920100 196920100 G A CFHR2 Silent p.E124E 0.10 TCGA-CV-6936-01 1 197298069 197298069 G A CRB1 Silent p.K196K 0.05 TCGA-CV-6936-01 1 20107215 20107215 G C TMCO4 Missense_Mutation p.Q13E 0.19 tolerated_low_confidence(0.33) benign(0.029) TCGA-CV-6936-01 1 202457699 202457699 C G PPP1R12B Missense_Mutation p.S630C 0.61 deleterious(0) probably_damaging(0.995) TCGA-CV-6936-01 1 202863774 202863774 C G KLHL12 Missense_Mutation p.Q413H 0.09 deleterious(0.03) benign(0.047) TCGA-CV-6936-01 1 203186208 203186208 G A CHIT1 Nonsense_Mutation p.Q404* 0.09 TCGA-CV-6936-01 1 203316510 203316510 C T FMOD Missense_Mutation p.E297K 0.50 deleterious(0) probably_damaging(1) TCGA-CV-6936-01 1 204128555 204128555 C G REN Missense_Mutation p.E221Q 0.14 tolerated(0.23) benign(0.314) TCGA-CV-6936-01 1 204400897 204400897 C G PIK3C2B Missense_Mutation p.E1394Q 0.08 tolerated(0.07) benign(0.014) TCGA-CV-6936-01 1 205779410 205779410 G A SLC41A1 Missense_Mutation p.R54W 0.09 tolerated(0.06) possibly_damaging(0.649) TCGA-CV-6936-01 1 226474137 226474137 C G LIN9 Missense_Mutation p.D157H 0.27 deleterious(0) probably_damaging(0.99) TCGA-CV-6936-01 1 228432256 228432256 C T OBSCN Silent p.F1247F 0.05 TCGA-CV-6936-01 1 228521393 228521393 C T OBSCN Silent p.S6279S 0.53 TCGA-CV-6936-01 1 228556503 228556503 A G OBSCN Silent p.P7573P 0.62 TCGA-CV-6936-01 1 231335933 231335933 C T TRIM67 Missense_Mutation p.R435C 0.06 deleterious(0) possibly_damaging(0.72) TCGA-CV-6936-01 1 24119147 24119148 - C LYPLA2 Intron 0.23 TCGA-CV-6936-01 1 247040301 247040301 T C AHCTF1 Missense_Mutation p.N972S 0.12 deleterious(0.01) benign(0.381) TCGA-CV-6936-01 1 248224496 248224496 G T OR2L3 Missense_Mutation p.R171S 0.13 deleterious(0) probably_damaging(0.939) TCGA-CV-6936-01 1 25810760 25810760 G A TMEM57 Silent p.Q436Q 0.27 TCGA-CV-6936-01 1 27875878 27875878 C T AHDC1 Missense_Mutation p.A917T 0.25 tolerated(0.29) benign(0) TCGA-CV-6936-01 1 39749116 39749116 A G MACF1 Missense_Mutation p.I287V 0.24 possibly_damaging(0.537) TCGA-CV-6936-01 1 40027815 40027815 C T PABPC4 Missense_Mutation p.G608E 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6936-01 1 46826430 46826430 A - NSUN4 Frame_Shift_Del p.N270Tfs*72 0.26 TCGA-CV-6936-01 1 53459281 53459281 C T SCP2 Intron 0.14 TCGA-CV-6936-01 1 53712666 53712666 G A LRP8 3'UTR 0.37 TCGA-CV-6936-01 1 66101929 66101929 C A LEPR Missense_Mutation p.P910H 0.28 deleterious(0) probably_damaging(1) TCGA-CV-6936-01 1 7896001 7896001 G C PER3 Missense_Mutation p.E1123Q 0.09 tolerated(0.08) probably_damaging(0.913) TCGA-CV-6936-01 1 978800 978800 C T AGRN Silent p.L522L 0.23 TCGA-CV-6936-01 20 2375175 2375175 G A TGM6 Missense_Mutation p.E29K 0.12 deleterious(0.05) possibly_damaging(0.61) TCGA-CV-6936-01 20 33329653 33329653 T C NCOA6 Silent p.K1469K 0.18 TCGA-CV-6936-01 20 36850870 36850870 C G KIAA1755 Missense_Mutation p.D800H 0.09 tolerated(0.06) possibly_damaging(0.824) TCGA-CV-6936-01 20 39791883 39791883 G C PLCG1 Missense_Mutation p.E253Q 0.15 deleterious(0.02) possibly_damaging(0.574) TCGA-CV-6936-01 20 61541176 61541176 C G DIDO1 Missense_Mutation p.D346H 0.04 probably_damaging(0.999) TCGA-CV-6936-01 20 62608706 62608706 C T SAMD10 Missense_Mutation p.E49K 0.09 deleterious(0) probably_damaging(0.936) TCGA-CV-6936-01 21 27130510 27130510 G A GABPA Missense_Mutation p.R248Q 0.31 deleterious(0.01) possibly_damaging(0.878) TCGA-CV-6936-01 21 28338237 28338237 G A ADAMTS5 Silent p.V158V 0.22 TCGA-CV-6936-01 21 38597790 38597790 A - DSCR3 3'UTR 0.21 TCGA-CV-6936-01 21 40762689 40762689 G A WRB Missense_Mutation p.M56I 0.12 deleterious(0.02) benign(0.262) TCGA-CV-6936-01 21 46951984 46951984 G A SLC19A1 Silent p.L90L 0.36 TCGA-CV-6936-01 22 17119533 17119533 G A TPTEP1 RNA 0.23 TCGA-CV-6936-01 22 19076905 19076905 C T DGCR2 Missense_Mutation p.E60K 0.10 tolerated_low_confidence(0.76) benign(0.006) TCGA-CV-6936-01 22 19183840 19183840 G A CLTCL1 Silent p.L1376L 0.10 TCGA-CV-6936-01 22 19209480 19209480 C G CLTCL1 Missense_Mutation p.R852T 0.06 deleterious(0) possibly_damaging(0.789) TCGA-CV-6936-01 22 19766783 19766783 G A GNB1L 3'Flank 0.13 TCGA-CV-6936-01 22 21157491 21157491 G A PI4KA Nonsense_Mutation p.Q527* 0.08 TCGA-CV-6936-01 22 21377467 21377467 C T P2RX6 Silent p.F206F 0.04 TCGA-CV-6936-01 22 26343755 26343755 G C MYO18B Silent p.L1903L 0.33 TCGA-CV-6936-01 22 27026341 27026341 C T CRYBA4 Nonsense_Mutation p.Q161* 0.24 TCGA-CV-6936-01 22 31010483 31010483 C T TCN2 Missense_Mutation p.S192F 0.34 deleterious(0) probably_damaging(0.986) TCGA-CV-6936-01 22 35789458 35789458 C G HMOX1 Intron 0.15 TCGA-CV-6936-01 22 36886209 36886209 T C FOXRED2 Missense_Mutation p.H634R 0.10 tolerated_low_confidence(0.09) benign(0.007) TCGA-CV-6936-01 22 40825650 40825650 G T MKL1 Missense_Mutation p.N87K 0.71 deleterious(0) probably_damaging(0.992) TCGA-CV-6936-01 22 50721260 50721260 C T PLXNB2 Missense_Mutation p.R956Q 0.12 tolerated(0.58) benign(0.084) TCGA-CV-6936-01 2 116447315 116447315 G A DPP10 Missense_Mutation p.R169K 0.19 tolerated(1) benign(0.014) TCGA-CV-6936-01 2 141260622 141260622 G C LRP1B Missense_Mutation p.L2858V 0.27 possibly_damaging(0.694) TCGA-CV-6936-01 2 149227843 149227843 C T MBD5 Silent p.N777N 0.23 TCGA-CV-6936-01 2 168102261 168102261 T G XIRP2 Silent p.T1453T 0.40 TCGA-CV-6936-01 2 175346518 175346518 C G GPR155 Missense_Mutation p.G56A 0.24 deleterious(0) probably_damaging(1) TCGA-CV-6936-01 2 179395647 179395647 G T TTN Missense_Mutation p.P35232Q 0.08 TCGA-CV-6936-01 2 179593094 179593094 T G TTN Missense_Mutation p.K6486T 0.32 TCGA-CV-6936-01 2 179654776 179654776 G T TTN Missense_Mutation p.Q623K 0.39 TCGA-CV-6936-01 2 179655440 179655440 C T TTN Missense_Mutation p.E599K 0.06 TCGA-CV-6936-01 2 179669350 179669350 G A TTN Missense_Mutation p.T7M 0.28 TCGA-CV-6936-01 2 190719576 190719576 T C PMS1 Silent p.C526C 0.30 TCGA-CV-6936-01 2 191863005 191863005 C T STAT1 Missense_Mutation p.D191N 0.10 tolerated(0.35) benign(0.139) TCGA-CV-6936-01 2 196664153 196664153 C T DNAH7 Missense_Mutation p.R3407H 0.28 tolerated(0.06) benign(0.051) TCGA-CV-6936-01 2 201725853 201725853 G A CLK1 Intron 0.25 TCGA-CV-6936-01 2 21224885 21224885 G A APOB Missense_Mutation p.S4470F 0.13 possibly_damaging(0.459) TCGA-CV-6936-01 2 216286886 216286886 G C FN1 Missense_Mutation p.H492D 0.16 deleterious(0) probably_damaging(0.994) TCGA-CV-6936-01 2 231112644 231112644 C T SP140 Silent p.N252N 0.29 TCGA-CV-6936-01 2 237075004 237075004 C A GBX2 Silent p.S200S 0.33 TCGA-CV-6936-01 2 242435027 242435027 C T STK25 3'UTR 0.26 TCGA-CV-6936-01 2 24345335 24345335 A T PFN4 Missense_Mutation p.I24N 0.56 deleterious(0) probably_damaging(0.965) TCGA-CV-6936-01 2 25463307 25463307 C T DNMT3A Missense_Mutation p.R729Q 0.52 deleterious(0.02) probably_damaging(0.973) TCGA-CV-6936-01 2 63217961 63217961 G A EHBP1 Missense_Mutation p.E978K 0.13 tolerated(0.31) benign(0.003) TCGA-CV-6936-01 2 66775128 66775128 C T MEIS1 Silent p.L314L 0.28 TCGA-CV-6936-01 2 70188034 70188034 G A ASPRV1 Silent p.L263L 0.28 TCGA-CV-6936-01 2 71653623 71653623 G T ZNF638 Missense_Mutation p.V1542F 0.46 deleterious(0) probably_damaging(0.999) TCGA-CV-6936-01 2 79314023 79314023 C G REG1B Missense_Mutation p.R33P 0.55 deleterious(0.02) possibly_damaging(0.507) TCGA-CV-6936-01 2 79878701 79878701 C T CTNNA2 Missense_Mutation p.P7S 0.29 tolerated(0.64) benign(0.007) TCGA-CV-6936-01 2 90193380 90193380 G A IGKV1D-13 Missense_Mutation p.E103K 0.11 deleterious(0.01) probably_damaging(0.93) TCGA-CV-6936-01 3 100463757 100463758 - A TFG Nonsense_Mutation p.Y268* 0.35 TCGA-CV-6936-01 3 112998239 112998239 A T BOC Missense_Mutation p.I653F 0.16 deleterious(0.01) benign(0.338) TCGA-CV-6936-01 3 120315376 120315376 G A NDUFB4 Missense_Mutation p.R57Q 0.17 tolerated(0.4) benign(0.036) TCGA-CV-6936-01 3 121414936 121414936 T C GOLGB1 Silent p.E1478E 0.16 TCGA-CV-6936-01 3 125648482 125648482 A G ALG1L Intron 0.29 TCGA-CV-6936-01 3 136573801 136573801 C T SLC35G2 Nonsense_Mutation p.R167* 0.17 TCGA-CV-6936-01 3 147106535 147106535 C G ZIC4 3'UTR 0.19 TCGA-CV-6936-01 3 147114239 147114239 G T ZIC4 Missense_Mutation p.H80N 0.18 deleterious(0) possibly_damaging(0.838) TCGA-CV-6936-01 3 147114240 147114240 G T ZIC4 Missense_Mutation p.H79Q 0.20 tolerated(0.33) benign(0.075) TCGA-CV-6936-01 3 148459339 148459339 G A AGTR1 Missense_Mutation p.E173K 0.22 tolerated(0.6) benign(0.02) TCGA-CV-6936-01 3 15609959 15609959 C T HACL1 Silent p.Q410Q 0.10 TCGA-CV-6936-01 3 157146114 157146114 G A VEPH1 Silent p.L231L 0.08 TCGA-CV-6936-01 3 160099354 160099354 G A IFT80 Missense_Mutation p.P66S 0.15 tolerated(0.06) possibly_damaging(0.571) TCGA-CV-6936-01 3 182841786 182841786 C G LAMP3 3'UTR 0.09 TCGA-CV-6936-01 3 183707045 183707045 T C ABCC5 Missense_Mutation p.S86G 0.62 tolerated(0.1) benign(0.001) TCGA-CV-6936-01 3 30713698 30713698 C T TGFBR2 Silent p.V366V 0.57 TCGA-CV-6936-01 3 37048548 37048548 G A MLH1 Silent p.Q149Q 0.57 TCGA-CV-6936-01 3 38081086 38081086 G A DLEC1 Missense_Mutation p.E124K 0.37 tolerated(0.08) benign(0.058) TCGA-CV-6936-01 3 3888390 3888390 G T LRRN1 Nonsense_Mutation p.E689* 0.68 TCGA-CV-6936-01 3 39156090 39156090 G A TTC21A Missense_Mutation p.M191I 0.52 tolerated(0.21) benign(0.211) TCGA-CV-6936-01 3 46713495 46713495 C G ALS2CL Missense_Mutation p.E855Q 0.05 tolerated(0.49) benign(0.367) TCGA-CV-6936-01 3 47033992 47033992 G A NBEAL2 Missense_Mutation p.E354K 0.56 tolerated(0.52) benign(0.066) TCGA-CV-6936-01 3 50151488 50151488 G C RBM5 Missense_Mutation p.E575Q 0.45 deleterious(0.04) probably_damaging(0.954) TCGA-CV-6936-01 3 51749374 51749374 G C GRM2 Missense_Mutation p.E529Q 0.29 tolerated(0.87) benign(0.361) TCGA-CV-6936-01 3 52947576 52947576 G C SFMBT1 Nonsense_Mutation p.S513* 0.52 TCGA-CV-6936-01 3 55984515 55984515 G A ERC2 Nonsense_Mutation p.Q781* 0.20 TCGA-CV-6936-01 3 99513335 99513335 G A COL8A1 Missense_Mutation p.G197E 0.08 deleterious(0) unknown(0) TCGA-CV-6936-01 4 110834476 110834476 C T EGF 5'UTR 0.30 TCGA-CV-6936-01 4 115769459 115769459 G C NDST4 Missense_Mutation p.P618A 0.06 deleterious(0.03) probably_damaging(0.962) TCGA-CV-6936-01 4 122250496 122250496 C A QRFPR Missense_Mutation p.E423D 0.28 tolerated_low_confidence(0.42) benign(0.033) TCGA-CV-6936-01 4 13603813 13603813 T A BOD1L1 Missense_Mutation p.N1571Y 0.17 benign(0.405) TCGA-CV-6936-01 4 175414436 175414436 C T HPGD Silent p.V176V 0.17 TCGA-CV-6936-01 4 175897135 175897135 C T ADAM29 Silent p.D153D 0.22 TCGA-CV-6936-01 4 186231908 186231908 C A SNX25 Missense_Mutation p.P264T 0.15 tolerated(0.11) benign(0.234) TCGA-CV-6936-01 4 186318369 186318369 G A ANKRD37 Silent p.K31K 0.14 TCGA-CV-6936-01 4 187628386 187628386 C - FAT1 Frame_Shift_Del p.D866Tfs*8 0.24 TCGA-CV-6936-01 4 187630110 187630110 G C FAT1 Missense_Mutation p.S291C 0.10 possibly_damaging(0.841) TCGA-CV-6936-01 4 22517230 22517230 C T GPR125 Missense_Mutation p.E60K 0.48 tolerated(0.4) benign(0.008) TCGA-CV-6936-01 4 39843630 39843630 C G PDS5A Missense_Mutation p.E1199Q 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.761) TCGA-CV-6936-01 4 41984115 41984115 C T DCAF4L1 Silent p.I102I 0.27 TCGA-CV-6936-01 4 42403210 42403210 C G SHISA3 Silent p.T153T 0.22 TCGA-CV-6936-01 4 54880271 54880271 C T CHIC2 Missense_Mutation p.E116K 0.37 deleterious(0.03) benign(0.314) TCGA-CV-6936-01 4 57896492 57896492 T - POLR2B Frame_Shift_Del p.C1122Vfs*3 0.18 TCGA-CV-6936-01 4 68925156 68925156 C G TMPRSS11F Missense_Mutation p.R349T 0.35 tolerated(0.3) possibly_damaging(0.872) TCGA-CV-6936-01 5 13901432 13901432 G A DNAH5 Missense_Mutation p.R661C 0.33 possibly_damaging(0.599) TCGA-CV-6936-01 5 139231379 139231379 T A NRG2 Missense_Mutation p.S528C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-6936-01 5 140203557 140203557 C T PCDHA5 Missense_Mutation p.R733W 0.31 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-CV-6936-01 5 140433131 140433131 C A PCDHB1 Silent p.V692V 0.22 TCGA-CV-6936-01 5 140746180 140746180 G A PCDHGA5 Silent p.A761A 0.08 TCGA-CV-6936-01 5 140789449 140789449 G A PCDHGB6 Silent p.P560P 0.21 TCGA-CV-6936-01 5 151052775 151052775 T C SPARC Silent p.V41V 0.32 TCGA-CV-6936-01 5 176308467 176308467 G A HK3 Silent p.D821D 0.33 TCGA-CV-6936-01 5 180057046 180057046 C A FLT4 Missense_Mutation p.M191I 0.23 tolerated(0.15) benign(0.013) TCGA-CV-6936-01 5 26881405 26881405 G A CDH9 Missense_Mutation p.T737M 0.28 deleterious(0) possibly_damaging(0.873) TCGA-CV-6936-01 5 35086419 35086419 C G PRLR Missense_Mutation p.E32Q 0.22 tolerated(0.44) benign(0.012) TCGA-CV-6936-01 5 37022428 37022428 G A NIPBL Missense_Mutation p.R1837Q 0.16 deleterious(0) probably_damaging(0.923) TCGA-CV-6936-01 5 43539127 43539127 C T PAIP1 Missense_Mutation p.E249K 0.28 deleterious(0) probably_damaging(0.979) TCGA-CV-6936-01 5 53814496 53814496 C T SNX18 Silent p.S238S 0.30 TCGA-CV-6936-01 5 79854712 79854712 G C ANKRD34B Nonsense_Mutation p.S376* 0.13 TCGA-CV-6936-01 5 94842673 94842673 G A TTC37 Silent p.Y1019Y 0.31 TCGA-CV-6936-01 5 96320825 96320825 C G LNPEP Missense_Mutation p.S301C 0.21 tolerated(0.06) probably_damaging(0.986) TCGA-CV-6936-01 6 105816838 105816838 C A PREP Missense_Mutation p.Q219H 0.41 deleterious(0) probably_damaging(0.99) TCGA-CV-6936-01 6 116265528 116265528 G A FRK Missense_Mutation p.S340F 0.19 deleterious(0) probably_damaging(0.994) TCGA-CV-6936-01 6 146720758 146720758 C T GRM1 Silent p.G861G 0.32 TCGA-CV-6936-01 6 149699950 149699950 C T TAB2 Missense_Mutation p.S300L 0.09 tolerated(0.19) benign(0.03) TCGA-CV-6936-01 6 152737810 152737810 G A SYNE1 Missense_Mutation p.S1921F 0.32 possibly_damaging(0.498) TCGA-CV-6936-01 6 160899548 160899548 G C LPAL2 RNA 0.16 TCGA-CV-6936-01 6 165792780 165792780 T A PDE10A Missense_Mutation p.I630F 0.15 deleterious(0) probably_damaging(0.986) TCGA-CV-6936-01 6 29407891 29407891 C T OR10C1 Silent p.I33I 0.34 TCGA-CV-6936-01 6 30658649 30658649 G C NRM Missense_Mutation p.L35V 0.31 tolerated(0.41) benign(0.254) TCGA-CV-6936-01 6 32007955 32007955 C T CYP21A2 Silent p.A304A 0.20 TCGA-CV-6936-01 6 32097359 32097359 C T FKBPL Missense_Mutation p.E67K 0.14 tolerated_low_confidence(0.14) benign(0.118) TCGA-CV-6936-01 6 34741420 34741420 G C SNRPC 3'UTR 0.10 TCGA-CV-6936-01 6 38821072 38821072 C G DNAH8 Missense_Mutation p.I1677M 0.38 probably_damaging(0.99) TCGA-CV-6936-01 6 41900357 41900357 C T BYSL Silent p.P409P 0.15 TCGA-CV-6936-01 6 46967889 46967889 C T GPR110 3'UTR 0.18 TCGA-CV-6936-01 6 7301699 7301699 G T SSR1 Missense_Mutation p.D129E 0.29 deleterious(0.03) probably_damaging(0.951) TCGA-CV-6936-01 6 76344433 76344433 C T SENP6 Nonsense_Mutation p.Q122* 0.30 TCGA-CV-6936-01 7 100676630 100676630 G C MUC17 Missense_Mutation p.E645Q 0.19 benign(0.243) TCGA-CV-6936-01 7 107114489 107114489 C A GPR22 5'UTR 0.24 TCGA-CV-6936-01 7 108524578 108524578 C G C7orf66 Silent p.V4V 0.05 TCGA-CV-6936-01 7 111368292 111368292 C T DOCK4 3'UTR 0.74 TCGA-CV-6936-01 7 120764400 120764400 G C CPED1 Missense_Mutation p.E312Q 0.22 tolerated(0.09) possibly_damaging(0.603) TCGA-CV-6936-01 7 127240328 127240328 G A FSCN3 Missense_Mutation p.E458K 0.09 deleterious(0) possibly_damaging(0.505) TCGA-CV-6936-01 7 133812362 133812362 G A LRGUK Missense_Mutation p.G81D 0.13 tolerated_low_confidence(0.61) benign(0.001) TCGA-CV-6936-01 7 138603487 138603487 G A KIAA1549 Silent p.D295D 0.21 TCGA-CV-6936-01 7 139727113 139727113 G A PARP12 Nonsense_Mutation p.R531* 0.11 TCGA-CV-6936-01 7 140373236 140373236 G T ADCK2 Missense_Mutation p.D36Y 0.33 deleterious(0.01) benign(0.092) TCGA-CV-6936-01 7 142231586 142231586 C T TRBV10-1 Missense_Mutation p.A111T 0.40 deleterious(0.04) possibly_damaging(0.838) TCGA-CV-6936-01 7 142643301 142643301 C T KEL Missense_Mutation p.R436Q 0.42 tolerated(0.67) benign(0.017) TCGA-CV-6936-01 7 26236448 26236448 C T HNRNPA2B1 Missense_Mutation p.D164N 0.11 deleterious(0.02) unknown(0) TCGA-CV-6936-01 7 37956080 37956080 G A SFRP4 Silent p.R20R 0.35 TCGA-CV-6936-01 7 48318187 48318187 C G ABCA13 Missense_Mutation p.L2466V 0.08 benign(0.209) TCGA-CV-6936-01 7 70853278 70853278 C G WBSCR17 Missense_Mutation p.F160L 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-CV-6936-01 7 82475906 82475906 T A PCLO Missense_Mutation p.E4603V 0.51 unknown(0) TCGA-CV-6936-01 7 87258202 87258202 G C RUNDC3B Missense_Mutation p.K21N 0.25 tolerated_low_confidence(0.11) unknown(0) TCGA-CV-6936-01 7 99264357 99264357 C G CYP3A5 Intron 0.13 TCGA-CV-6936-01 7 99306662 99306662 C T CYP3A7 Missense_Mutation p.E417K 0.16 deleterious(0) probably_damaging(0.965) TCGA-CV-6936-01 8 101932872 101932872 G T YWHAZ 3'UTR 0.47 TCGA-CV-6936-01 8 113364752 113364752 C A CSMD3 Missense_Mutation p.D2050Y 0.11 deleterious(0.01) probably_damaging(0.91) TCGA-CV-6936-01 8 135612760 135612760 C T ZFAT Silent p.L798L 0.19 TCGA-CV-6936-01 8 142432330 142432330 C T PTP4A3 5'UTR 0.22 TCGA-CV-6936-01 8 144464817 144464817 C T RHPN1 Missense_Mutation p.P670L 0.52 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-CV-6936-01 8 144996395 144996395 C G PLEC Missense_Mutation p.E2669Q 0.20 possibly_damaging(0.771) TCGA-CV-6936-01 8 145640760 145640760 G T SLC39A4 Missense_Mutation p.A173E 0.35 tolerated(0.17) possibly_damaging(0.887) TCGA-CV-6936-01 8 28974435 28974435 G A KIF13B Silent p.I1250I 0.30 TCGA-CV-6936-01 8 3267046 3267046 G T CSMD1 Missense_Mutation p.T548K 0.44 benign(0.096) TCGA-CV-6936-01 8 42179657 42179657 C G IKBKB Missense_Mutation p.I608M 0.12 tolerated(0.1) possibly_damaging(0.51) TCGA-CV-6936-01 8 57025647 57025647 G A MOS Missense_Mutation p.L299F 0.21 tolerated(0.19) probably_damaging(0.959) TCGA-CV-6936-01 8 57025648 57025648 G A MOS Silent p.S298S 0.20 TCGA-CV-6936-01 8 67514655 67514655 C T MYBL1 Missense_Mutation p.E42K 0.26 deleterious(0) probably_damaging(0.968) TCGA-CV-6936-01 8 6794410 6794410 G C DEFA4 Missense_Mutation p.I4M 0.31 deleterious(0.01) unknown(0) TCGA-CV-6936-01 8 68007843 68007843 C T CSPP1 Missense_Mutation p.R276C 0.16 tolerated(0.24) benign(0.002) TCGA-CV-6936-01 8 70964454 70964454 G C PRDM14 Missense_Mutation p.S525C 0.13 deleterious(0.03) benign(0.054) TCGA-CV-6936-01 8 77775694 77775694 T C ZFHX4 Silent p.N3248N 0.22 TCGA-CV-6936-01 8 87645041 87645041 A G CNGB3 Missense_Mutation p.I420T 0.42 deleterious(0.01) possibly_damaging(0.457) TCGA-CV-6936-01 8 87738776 87738776 C T CNGB3 Silent p.G107G 0.21 TCGA-CV-6936-01 8 90937360 90937360 C T OSGIN2 Missense_Mutation p.S417F 0.09 deleterious(0.04) possibly_damaging(0.694) TCGA-CV-6936-01 9 113169482 113169482 C G SVEP1 Missense_Mutation p.E2800Q 0.59 benign(0.024) TCGA-CV-6936-01 9 133957539 133957539 G C LAMC3 Missense_Mutation p.D1341H 0.68 tolerated(0.11) possibly_damaging(0.832) TCGA-CV-6936-01 9 136253248 136253248 C G C9orf96 Silent p.L104L 0.18 TCGA-CV-6936-01 9 139744530 139744530 G A PHPT1 Missense_Mutation p.G76S 0.67 deleterious(0) probably_damaging(1) TCGA-CV-6936-01 9 139840948 139840948 G C C8G Silent p.L162L 0.13 TCGA-CV-6936-01 9 140115259 140115259 C T RNF208 Missense_Mutation p.A136T 0.68 tolerated(0.85) benign(0.001) TCGA-CV-6936-01 9 15469058 15469058 T C PSIP1 Splice_Site p.X369_splice 0.38 TCGA-CV-6936-01 9 34098412 34098412 G C DCAF12 Missense_Mutation p.I235M 0.06 tolerated(0.07) possibly_damaging(0.459) TCGA-CV-6936-01 9 90502856 90502856 A G SPATA31E1 Missense_Mutation p.T1152A 0.20 tolerated(0.52) benign(0.054) TCGA-CV-6936-01 X 102842017 102842017 C T TCEAL4 Silent p.L138L 0.08 TCGA-CV-6936-01 X 103041526 103041526 C T PLP1 Silent p.I108I 0.10 TCGA-CV-6936-01 X 105280474 105280474 G A SERPINA7 Silent p.L192L 0.15 TCGA-CV-6936-01 X 109922601 109922601 C T CHRDL1 Silent p.E403E 0.75 TCGA-CV-6936-01 X 132548982 132548982 G A GPC4 Silent p.F4F 0.19 TCGA-CV-6936-01 X 152160167 152160167 C T PNMA5 5'UTR 0.82 TCGA-CV-6936-01 X 1554652 1554652 C T ASMTL Splice_Site p.X92_splice 0.13 TCGA-CV-6936-01 X 21545080 21545080 C T CNKSR2 Silent p.L351L 0.10 TCGA-CV-6936-01 X 38664680 38664680 C G MID1IP1 Missense_Mutation p.L161V 0.56 deleterious(0) probably_damaging(1) TCGA-CV-6936-01 X 40456555 40456555 G C ATP6AP2 Missense_Mutation p.E119Q 0.26 tolerated(0.08) benign(0.051) TCGA-CV-6936-01 X 47074277 47074277 C T UBA1 Silent p.D1042D 0.59 TCGA-CV-6936-01 X 56591223 56591223 A T UBQLN2 Missense_Mutation p.Q306L 0.79 deleterious(0) benign(0.298) TCGA-CV-6936-01 X 69489243 69489243 A C ARR3 Missense_Mutation p.K3T 0.65 deleterious(0.02) benign(0.002) TCGA-CV-6936-01 Y 21877710 21877710 G A KDM5D Missense_Mutation p.R738W 0.88 deleterious(0) probably_damaging(0.954) TCGA-CV-6937-01 10 101120712 101120712 C T CNNM1 Missense_Mutation p.T613I 0.22 deleterious(0) possibly_damaging(0.78) TCGA-CV-6937-01 10 1405267 1405267 G A ADARB2 Missense_Mutation p.P345S 0.28 tolerated(0.12) possibly_damaging(0.637) TCGA-CV-6937-01 10 75104930 75104930 G T TTC18 Missense_Mutation p.L168I 0.21 deleterious(0.03) probably_damaging(0.99) TCGA-CV-6937-01 10 75397509 75397509 C T MYOZ1 Missense_Mutation p.S82N 0.19 tolerated(0.67) benign(0.006) TCGA-CV-6937-01 11 18159705 18159705 G C MRGPRX3 Missense_Mutation p.R319T 0.06 deleterious(0.04) benign(0.197) TCGA-CV-6937-01 11 35308409 35308409 G A SLC1A2 Missense_Mutation p.A394V 0.11 deleterious(0) probably_damaging(1) TCGA-CV-6937-01 11 5080740 5080740 C T OR52E2 Missense_Mutation p.A40T 0.19 deleterious(0.05) possibly_damaging(0.73) TCGA-CV-6937-01 11 56128260 56128260 G C OR8J1 Missense_Mutation p.D180H 0.24 deleterious(0) probably_damaging(1) TCGA-CV-6937-01 11 56431506 56431506 G C OR5AR1 Silent p.L115L 0.12 TCGA-CV-6937-01 11 7111302 7111302 T C RBMXL2 Silent p.D317D 0.20 TCGA-CV-6937-01 11 93170975 93170975 C G CCDC67 3'UTR 0.12 TCGA-CV-6937-01 12 110246181 110246181 C T TRPV4 Missense_Mutation p.R160Q 0.25 tolerated(0.65) possibly_damaging(0.544) TCGA-CV-6937-01 12 18234091 18234091 C T RERGL 3'UTR 0.28 TCGA-CV-6937-01 12 48921776 48921776 G A OR8S1 Missense_Mutation p.E324K 0.38 deleterious_low_confidence(0.04) benign(0.001) TCGA-CV-6937-01 12 4919817 4919817 C T KCNA6 Nonsense_Mutation p.R204* 0.14 TCGA-CV-6937-01 12 5020755 5020755 C T KCNA1 Missense_Mutation p.R71C 0.20 deleterious(0) probably_damaging(0.954) TCGA-CV-6937-01 12 62749159 62749159 A G USP15 Missense_Mutation p.N273S 0.18 tolerated(1) benign(0.001) TCGA-CV-6937-01 12 6970649 6970649 A G USP5 Missense_Mutation p.E514G 0.17 tolerated(0.4) benign(0.158) TCGA-CV-6937-01 12 91366624 91366624 G C EPYC Missense_Mutation p.I158M 0.05 deleterious(0) probably_damaging(0.973) TCGA-CV-6937-01 13 24823649 24823649 C T SPATA13 Missense_Mutation p.S563L 0.50 deleterious_low_confidence(0.04) benign(0.21) TCGA-CV-6937-01 14 52194479 52194479 C G FRMD6 Missense_Mutation p.P534R 0.13 tolerated(0.07) benign(0.157) TCGA-CV-6937-01 14 71444809 71444809 T A PCNX Silent p.G585G 0.12 TCGA-CV-6937-01 14 73422322 73422322 G A DCAF4 Missense_Mutation p.R366H 0.15 tolerated(0.4) benign(0.036) TCGA-CV-6937-01 14 77722968 77722968 G C TMEM63C Missense_Mutation p.E774Q 0.31 tolerated(0.25) benign(0.265) TCGA-CV-6937-01 14 93723663 93723663 T G BTBD7 Missense_Mutation p.K496Q 0.09 deleterious(0.01) probably_damaging(0.972) TCGA-CV-6937-01 14 95571506 95571506 T A DICER1 Silent p.I1057I 0.14 TCGA-CV-6937-01 15 48446066 48446066 C A MYEF2 Missense_Mutation p.G337V 0.23 deleterious(0) possibly_damaging(0.507) TCGA-CV-6937-01 16 18602585 18602585 C T ABCC6P1 RNA 0.19 TCGA-CV-6937-01 16 28997738 28997738 C T LAT Missense_Mutation p.T130M 0.18 tolerated_low_confidence(1) benign(0.002) TCGA-CV-6937-01 16 68853324 68853324 C A CDH1 Missense_Mutation p.D569E 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-6937-01 16 84229512 84229512 G C ADAD2 Missense_Mutation p.V464L 0.11 tolerated(0.58) benign(0.025) TCGA-CV-6937-01 16 90103725 90103725 A C GAS8 Missense_Mutation p.D281A 0.28 deleterious(0.04) benign(0.142) TCGA-CV-6937-01 17 37224028 37224028 T C PLXDC1 3'UTR 0.07 TCGA-CV-6937-01 17 7578232 7578232 A - TP53 Frame_Shift_Del p.L206Wfs*41 0.26 TCGA-CV-6937-01 17 8793324 8793324 C T PIK3R5 Silent p.A259A 0.30 TCGA-CV-6937-01 19 15198322 15198322 G A OR1I1 Nonsense_Mutation p.W149* 0.19 TCGA-CV-6937-01 19 17322582 17322582 A T MYO9B Missense_Mutation p.E2019D 0.19 deleterious(0.01) possibly_damaging(0.685) TCGA-CV-6937-01 19 23844924 23844924 T G ZNF675 Missense_Mutation p.E73A 0.21 deleterious(0.02) benign(0.003) TCGA-CV-6937-01 19 36037696 36037696 G A TMEM147 Silent p.E110E 0.09 TCGA-CV-6937-01 19 36365411 36365411 C A APLP1 Missense_Mutation p.F354L 0.27 deleterious(0) probably_damaging(0.995) TCGA-CV-6937-01 19 41129882 41129882 G A LTBP4 Missense_Mutation p.G1309S 0.21 deleterious(0.01) possibly_damaging(0.455) TCGA-CV-6937-01 19 49993877 49993877 C T RPL13A Intron 0.18 TCGA-CV-6937-01 19 53740463 53740463 T G ZNF677 Missense_Mutation p.K506T 0.06 deleterious(0.03) benign(0.324) TCGA-CV-6937-01 1 118640375 118640375 G T SPAG17 Missense_Mutation p.T310K 0.87 deleterious(0.01) probably_damaging(0.942) TCGA-CV-6937-01 1 120458562 120458562 C G NOTCH2 Missense_Mutation p.E2261D 0.22 tolerated(0.48) benign(0.002) TCGA-CV-6937-01 1 151955750 151955750 C A S100A10 Missense_Mutation p.Q61H 0.17 deleterious(0.03) possibly_damaging(0.868) TCGA-CV-6937-01 1 152081918 152081918 G A TCHH Missense_Mutation p.R1259C 0.24 unknown(0) TCGA-CV-6937-01 1 157666098 157666098 C T FCRL3 Silent p.V288V 0.12 TCGA-CV-6937-01 1 160001164 160001164 G A PIGM Silent p.R122R 0.16 TCGA-CV-6937-01 1 162737067 162737067 G C DDR2 Missense_Mutation p.C404S 0.15 tolerated(0.12) probably_damaging(0.999) TCGA-CV-6937-01 1 167088617 167088617 A G DUSP27 Missense_Mutation p.E190G 0.22 deleterious(0) probably_damaging(1) TCGA-CV-6937-01 1 167971802 167971802 G A DCAF6 Missense_Mutation p.R329Q 0.12 tolerated(0.11) probably_damaging(0.964) TCGA-CV-6937-01 1 168153231 168153231 G A TIPRL Missense_Mutation p.E66K 0.19 deleterious(0.02) possibly_damaging(0.595) TCGA-CV-6937-01 1 175053061 175053072 TGACATCACTGG - TNN Splice_Site p.X409_splice 0.13 TCGA-CV-6937-01 1 177000057 177000057 G T ASTN1 Missense_Mutation p.N299K 0.12 tolerated_low_confidence(0.11) benign(0.01) TCGA-CV-6937-01 1 196882040 196882040 C A CFHR4 Missense_Mutation p.P389T 0.34 tolerated(0.05) possibly_damaging(0.784) TCGA-CV-6937-01 1 200944711 200944711 G A KIF21B Silent p.L1510L 0.10 TCGA-CV-6937-01 1 207195191 207195191 T A C1orf116 3'UTR 0.35 TCGA-CV-6937-01 1 209949072 209949072 C A TRAF3IP3 Silent p.S348S 0.16 TCGA-CV-6937-01 1 211923148 211923148 T A LPGAT1 3'UTR 0.36 TCGA-CV-6937-01 1 212553337 212553337 G A TMEM206 Missense_Mutation p.R241W 0.32 deleterious(0) probably_damaging(0.951) TCGA-CV-6937-01 1 216737606 216737606 C A ESRRG Missense_Mutation p.D285Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-6937-01 1 241799198 241799198 T C CHML 5'UTR 0.33 TCGA-CV-6937-01 1 36054125 36054125 G A TFAP2E Missense_Mutation p.A253T 0.28 deleterious(0) probably_damaging(0.997) TCGA-CV-6937-01 1 42905661 42905664 ATAG - ZMYND12 Frame_Shift_Del p.L153Sfs*30 0.21 TCGA-CV-6937-01 1 76878016 76878016 C G ST6GALNAC3 Missense_Mutation p.I179M 0.11 benign(0.368) TCGA-CV-6937-01 1 77558068 77558068 G A PIGK Silent p.F393F 0.16 TCGA-CV-6937-01 20 18371073 18371073 C T DZANK1 Missense_Mutation p.G614R 0.11 deleterious(0) possibly_damaging(0.809) TCGA-CV-6937-01 20 40710552 40710552 A G PTPRT Silent p.R1414R 0.21 TCGA-CV-6937-01 20 57598597 57598597 G A TUBB1 Missense_Mutation p.M73I 0.21 tolerated_low_confidence(0.09) benign(0.128) TCGA-CV-6937-01 22 21134259 21134259 C T SERPIND1 Missense_Mutation p.S220L 0.24 tolerated(0.14) probably_damaging(0.984) TCGA-CV-6937-01 22 21134279 21134279 C T SERPIND1 Nonsense_Mutation p.Q227* 0.29 TCGA-CV-6937-01 22 21134359 21134359 C T SERPIND1 Silent p.F253F 0.41 TCGA-CV-6937-01 22 21134379 21134379 C G SERPIND1 Nonsense_Mutation p.S260* 0.42 TCGA-CV-6937-01 22 21134470 21134470 C T SERPIND1 Silent p.L290L 0.41 TCGA-CV-6937-01 22 21134479 21134479 C T SERPIND1 Silent p.I293I 0.41 TCGA-CV-6937-01 22 42032124 42032124 A G XRCC6 Missense_Mutation p.Q68R 0.16 tolerated(1) benign(0.085) TCGA-CV-6937-01 22 50664276 50664276 C T TUBGCP6 Missense_Mutation p.V644I 0.12 tolerated(0.08) possibly_damaging(0.897) TCGA-CV-6937-01 2 132290462 132290462 A G CCDC74A Missense_Mutation p.E301G 0.19 deleterious(0) possibly_damaging(0.894) TCGA-CV-6937-01 2 141260621 141260621 A G LRP1B Missense_Mutation p.L2858P 0.22 probably_damaging(0.928) TCGA-CV-6937-01 2 1459959 1459959 G A TPO Missense_Mutation p.A242T 0.10 tolerated(0.31) benign(0.408) TCGA-CV-6937-01 2 158991382 158991382 C T UPP2 Missense_Mutation p.R369W 0.08 tolerated(0.15) benign(0.005) TCGA-CV-6937-01 2 1648500 1648500 G A PXDN Silent p.I1211I 0.23 TCGA-CV-6937-01 2 168725997 168725997 C A B3GALT1 Missense_Mutation p.H150N 0.15 tolerated(0.63) benign(0.055) TCGA-CV-6937-01 2 179620992 179620992 G C TTN Missense_Mutation p.D3737E 0.23 TCGA-CV-6937-01 2 219895483 219895485 CTT - CCDC108 In_Frame_Del p.K363del 0.17 TCGA-CV-6937-01 2 235950011 235950011 T A SH3BP4 Missense_Mutation p.S200T 0.26 tolerated(0.47) benign(0.003) TCGA-CV-6937-01 2 242162677 242162677 G A ANO7 Missense_Mutation p.V854I 0.25 tolerated(0.72) benign(0.386) TCGA-CV-6937-01 2 80530510 80530510 C T LRRTM1 Silent p.S145S 0.14 TCGA-CV-6937-01 2 88056409 88056409 C A PLGLB2 3'UTR 0.15 TCGA-CV-6937-01 2 90458636 90458636 A G CH17-132F21.1 Silent p.A104A 0.03 TCGA-CV-6937-01 2 99980764 99980764 A C EIF5B Missense_Mutation p.K390Q 0.09 benign(0.001) TCGA-CV-6937-01 3 112991529 112991529 C G BOC Missense_Mutation p.L314V 0.14 tolerated(0.31) benign(0.098) TCGA-CV-6937-01 3 119459395 119459395 G T MAATS1 Splice_Site p.X512_splice 0.13 TCGA-CV-6937-01 3 129009622 129009622 A G HMCES Missense_Mutation p.Y143C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-6937-01 3 134278043 134278043 A C CEP63 Missense_Mutation p.K575N 0.24 tolerated(0.05) benign(0.037) TCGA-CV-6937-01 3 142180856 142180856 T A ATR Missense_Mutation p.E2373V 0.19 deleterious(0) probably_damaging(1) TCGA-CV-6937-01 3 194080176 194080176 T C LRRC15 Missense_Mutation p.T539A 0.05 deleterious(0.01) benign(0.221) TCGA-CV-6937-01 3 196753556 196753556 C T MFI2 Silent p.P93P 0.06 TCGA-CV-6937-01 3 197351027 197351027 G A AC024560.3 RNA 0.21 TCGA-CV-6937-01 3 36897578 36897578 A G TRANK1 Missense_Mutation p.L1168P 0.25 deleterious(0) probably_damaging(1) TCGA-CV-6937-01 3 49721591 49721591 G A MST1 Missense_Mutation p.T683I 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-CV-6937-01 3 89521703 89521703 A T EPHA3 Missense_Mutation p.H927L 0.09 deleterious(0) benign(0.02) TCGA-CV-6937-01 4 100451030 100451030 C T C4orf17 Missense_Mutation p.S154F 0.29 tolerated(0.1) benign(0.047) TCGA-CV-6937-01 4 114257135 114257135 G A ANK2 Silent p.L1171L 0.11 TCGA-CV-6937-01 4 13603427 13603427 T C BOD1L1 Silent p.A1699A 0.09 TCGA-CV-6937-01 4 138451748 138451748 G T PCDH18 Missense_Mutation p.Q499K 0.11 tolerated(0.49) benign(0.202) TCGA-CV-6937-01 4 39308288 39308288 C A RFC1 Missense_Mutation p.G641V 0.09 deleterious(0) probably_damaging(0.967) TCGA-CV-6937-01 4 70346487 70346487 G A UGT2B4 Silent p.T484T 0.17 TCGA-CV-6937-01 4 8472843 8472843 C T TRMT44 Silent p.L654L 0.10 TCGA-CV-6937-01 5 102442428 102442428 T G GIN1 Missense_Mutation p.K109Q 0.12 deleterious(0.04) possibly_damaging(0.823) TCGA-CV-6937-01 5 108714181 108714181 T C PJA2 Missense_Mutation p.H336R 0.19 tolerated(0.09) possibly_damaging(0.521) TCGA-CV-6937-01 5 113740539 113740539 C T KCNN2 Silent p.V329V 0.12 TCGA-CV-6937-01 5 134871437 134871437 C T NEUROG1 5'UTR 0.17 TCGA-CV-6937-01 5 140263296 140263296 C T PCDHA13 Silent p.D481D 0.20 TCGA-CV-6937-01 5 140263844 140263844 C T PCDHA13 Missense_Mutation p.T664M 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-6937-01 5 140626124 140626124 A - PCDHB15 Frame_Shift_Del p.L327Ffs*21 0.17 TCGA-CV-6937-01 5 145609363 145609363 A G RBM27 Missense_Mutation p.Y160C 0.40 deleterious(0.01) possibly_damaging(0.872) TCGA-CV-6937-01 5 158140094 158140094 T A EBF1 Missense_Mutation p.H418L 0.35 tolerated_low_confidence(0.18) benign(0.086) TCGA-CV-6937-01 5 161324318 161324318 C T GABRA1 Nonsense_Mutation p.R421* 0.22 TCGA-CV-6937-01 5 24505329 24505329 C T CDH10 Missense_Mutation p.D429N 0.08 deleterious(0.04) benign(0.057) TCGA-CV-6937-01 5 33998863 33998863 G C AMACR Missense_Mutation p.R208G 0.05 deleterious(0) probably_damaging(0.972) TCGA-CV-6937-01 5 44809264 44809264 A T MRPS30 Missense_Mutation p.Q67L 0.24 tolerated(0.52) benign(0.186) TCGA-CV-6937-01 5 56777772 56777772 G A ACTBL2 Missense_Mutation p.R255C 0.13 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-CV-6937-01 5 63256301 63256301 T C HTR1A Missense_Mutation p.K416E 0.11 tolerated(0.17) benign(0.16) TCGA-CV-6937-01 6 110636640 110636640 A G METTL24 Silent p.S154S 0.12 TCGA-CV-6937-01 6 111697876 111697876 T C REV3L Missense_Mutation p.H561R 0.07 tolerated(0.08) probably_damaging(0.96) TCGA-CV-6937-01 6 149944272 149944272 T C KATNA1 Silent p.E156E 0.12 TCGA-CV-6937-01 6 161530868 161530868 A G MAP3K4 Missense_Mutation p.I1440V 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-CV-6937-01 6 170176742 170176742 G T ERMARD Missense_Mutation p.R571L 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-6937-01 6 26205156 26205156 G A HIST1H4E Missense_Mutation p.G95E 0.21 deleterious(0.02) possibly_damaging(0.696) TCGA-CV-6937-01 6 29911172 29911172 G A HLA-A Nonsense_Mutation p.W157* 0.21 TCGA-CV-6937-01 6 33703227 33703227 G A IP6K3 Silent p.A9A 0.12 TCGA-CV-6937-01 6 37426517 37426527 AAGGGCCCTAA - CMTR1 Frame_Shift_Del p.K303* 0.15 TCGA-CV-6937-01 6 83835435 83835435 G A DOPEY1 Missense_Mutation p.E568K 0.13 tolerated(0.31) benign(0.013) TCGA-CV-6937-01 7 103183184 103183184 T C RELN Missense_Mutation p.H2222R 0.11 tolerated(0.79) benign(0.031) TCGA-CV-6937-01 7 103270583 103270583 C A RELN Nonsense_Mutation p.G836* 0.09 TCGA-CV-6937-01 7 108213733 108213733 G A DNAJB9 Missense_Mutation p.C203Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-6937-01 7 112423785 112423786 - A TMEM168 Frame_Shift_Ins p.A366Cfs*37 0.15 TCGA-CV-6937-01 7 128394382 128394382 G C CALU Intron 0.21 TCGA-CV-6937-01 7 139575421 139575421 A G TBXAS1 Missense_Mutation p.Y75C 0.05 deleterious(0) probably_damaging(0.988) TCGA-CV-6937-01 7 30486644 30486644 C T NOD1 Missense_Mutation p.D770N 0.16 deleterious(0) benign(0.168) TCGA-CV-6937-01 7 48314127 48314127 C T ABCA13 Missense_Mutation p.P1622S 0.10 benign(0.031) TCGA-CV-6937-01 7 55242489 55242489 G A EGFR Silent p.P753P 0.09 TCGA-CV-6937-01 7 71252883 71252883 A C CALN1 Missense_Mutation p.H221Q 0.29 tolerated(0.29) possibly_damaging(0.808) TCGA-CV-6937-01 7 94750101 94750101 G A PPP1R9A Missense_Mutation p.V536I 0.25 deleterious(0) possibly_damaging(0.853) TCGA-CV-6937-01 8 101273978 101273978 T C RNF19A Missense_Mutation p.T492A 0.61 tolerated(0.46) benign(0.017) TCGA-CV-6937-01 8 110476615 110476615 A G PKHD1L1 Missense_Mutation p.I2518M 0.46 deleterious(0) possibly_damaging(0.864) TCGA-CV-6937-01 8 133142023 133142023 A C KCNQ3 Missense_Mutation p.V702G 0.05 tolerated(0.18) probably_damaging(0.959) TCGA-CV-6937-01 8 134030138 134030138 C T TG Silent p.D2226D 0.42 TCGA-CV-6937-01 8 142367504 142367504 C T GPR20 Missense_Mutation p.V174M 0.47 deleterious(0) probably_damaging(0.994) TCGA-CV-6937-01 8 48794645 48794645 A G PRKDC Missense_Mutation p.L1596S 0.33 probably_damaging(0.999) TCGA-CV-6937-01 9 101980621 101980621 C T ALG2 Silent p.Q282Q 0.30 TCGA-CV-6937-01 9 126414316 126414316 G A DENND1A Silent p.L198L 0.20 TCGA-CV-6937-01 9 87486857 87486857 C T NTRK2 Intron 0.21 TCGA-CV-6937-01 9 88207485 88207485 G A AGTPBP1 Missense_Mutation p.S813L 0.19 deleterious(0) possibly_damaging(0.599) TCGA-CV-6937-01 9 98241283 98241283 T A PTCH1 Missense_Mutation p.E405V 0.26 deleterious(0.01) possibly_damaging(0.477) TCGA-CV-6937-01 9 98775457 98775457 A G ERCC6L2 Missense_Mutation p.N514S 0.28 tolerated(0.62) benign(0.022) TCGA-CV-6937-01 X 12937993 12937993 A T TLR8 Silent p.I278I 0.20 TCGA-CV-6937-01 X 3030221 3030221 C T ARSF Missense_Mutation p.S466L 0.47 deleterious(0.04) benign(0.007) TCGA-CV-6937-01 X 37026544 37026544 T C FAM47C Missense_Mutation p.Y21H 0.46 deleterious(0.01) probably_damaging(0.961) TCGA-CV-6937-01 X 62917122 62917122 G T ARHGEF9 Silent p.I148I 0.36 TCGA-CV-6938-01 10 71142523 71142523 G A HK1 Missense_Mutation p.V520I 0.15 tolerated(0.05) benign(0.129) TCGA-CV-6938-01 10 72489916 72489916 G A ADAMTS14 Nonsense_Mutation p.W338* 0.11 TCGA-CV-6938-01 10 96117971 96117972 - T NOC3L Frame_Shift_Ins p.K74* 0.09 TCGA-CV-6938-01 11 118984985 118984985 G T C2CD2L Missense_Mutation p.D608Y 0.07 deleterious(0) probably_damaging(1) TCGA-CV-6938-01 11 124487352 124487352 C T PANX3 Silent p.S169S 0.15 TCGA-CV-6938-01 11 17523029 17523029 C A USH1C Missense_Mutation p.K760N 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-6938-01 11 30914379 30914379 T A DCDC1 Nonsense_Mutation p.K1687* 0.20 TCGA-CV-6938-01 11 534288 534288 C G HRAS Missense_Mutation p.G12A 0.16 deleterious(0.02) possibly_damaging(0.846) TCGA-CV-6938-01 11 55371657 55371657 A G OR4C11 Missense_Mutation p.S65P 0.10 deleterious(0.01) probably_damaging(1) TCGA-CV-6938-01 11 5758256 5758256 G T OR56B1 Silent p.V170V 0.15 TCGA-CV-6938-01 11 63066443 63066443 G T SLC22A10 Missense_Mutation p.E294D 0.11 deleterious(0.03) benign(0.071) TCGA-CV-6938-01 11 74989766 74989766 G A ARRB1 Missense_Mutation p.R169W 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-6938-01 11 8252036 8252036 G C LMO1 Missense_Mutation p.S14C 0.09 deleterious(0) possibly_damaging(0.838) TCGA-CV-6938-01 11 88583210 88583210 T C GRM5 Missense_Mutation p.K259E 0.08 deleterious(0.05) possibly_damaging(0.622) TCGA-CV-6938-01 11 89868742 89868742 C T NAALAD2 Missense_Mutation p.P33L 0.09 tolerated(0.08) benign(0.014) TCGA-CV-6938-01 12 100995424 100995424 G A GAS2L3 Missense_Mutation p.V66I 0.11 tolerated(0.52) benign(0.052) TCGA-CV-6938-01 12 101017977 101017977 G A GAS2L3 Missense_Mutation p.C465Y 0.08 tolerated(1) benign(0.001) TCGA-CV-6938-01 12 106708250 106708250 A G TCP11L2 Missense_Mutation p.Q91R 0.17 tolerated(0.16) benign(0.003) TCGA-CV-6938-01 12 113553852 113553852 T C RASAL1 Missense_Mutation p.N246D 0.07 tolerated(0.35) benign(0.009) TCGA-CV-6938-01 12 119978433 119978435 CAT - CCDC60 In_Frame_Del p.I524del 0.09 TCGA-CV-6938-01 12 122012498 122012498 C T KDM2B Silent p.K117K 0.08 TCGA-CV-6938-01 12 122386953 122386953 A G WDR66 Missense_Mutation p.I419V 0.10 tolerated(0.25) benign(0.012) TCGA-CV-6938-01 12 27869315 27869315 C T MRPS35 Missense_Mutation p.P82L 0.10 deleterious(0) probably_damaging(1) TCGA-CV-6938-01 12 44148515 44148515 G A PUS7L Silent p.A178A 0.10 TCGA-CV-6938-01 12 53854894 53854895 GT - PCBP2 Frame_Shift_Del p.V159Qfs*62 0.11 TCGA-CV-6938-01 12 56221562 56221562 C T DNAJC14 Nonsense_Mutation p.W294* 0.09 TCGA-CV-6938-01 12 9304243 9304243 C T PZP Missense_Mutation p.R1413Q 0.14 tolerated(0.16) probably_damaging(0.985) TCGA-CV-6938-01 13 100635244 100635244 G C ZIC2 Missense_Mutation p.R309P 0.12 deleterious(0) probably_damaging(0.996) TCGA-CV-6938-01 13 110827095 110827095 C T COL4A1 Missense_Mutation p.G1067E 0.11 probably_damaging(1) TCGA-CV-6938-01 13 25671496 25671496 C T PABPC3 Missense_Mutation p.A387V 0.08 tolerated(0.06) benign(0.379) TCGA-CV-6938-01 13 28895620 28895620 C T FLT1 Missense_Mutation p.D1052N 0.04 deleterious(0) probably_damaging(0.973) TCGA-CV-6938-01 13 44953805 44953807 GAC - SERP2 In_Frame_Del p.G38_P39delinsA 0.10 TCGA-CV-6938-01 13 46627851 46627851 G A CPB2 Silent p.G390G 0.14 TCGA-CV-6938-01 13 58208829 58208829 A G PCDH17 Missense_Mutation p.I717V 0.09 tolerated(0.75) benign(0.002) TCGA-CV-6938-01 13 60544103 60544103 C G DIAPH3 Missense_Mutation p.E683D 0.13 tolerated(0.25) probably_damaging(0.997) TCGA-CV-6938-01 13 78492516 78492516 A T EDNRB Missense_Mutation p.S155T 0.09 tolerated(0.06) benign(0.007) TCGA-CV-6938-01 14 20915266 20915266 C T OSGEP 3'UTR 0.12 TCGA-CV-6938-01 14 21464803 21464803 C T METTL17 Missense_Mutation p.H400Y 0.08 deleterious(0.03) probably_damaging(0.986) TCGA-CV-6938-01 14 23346570 23346570 G A LRP10 Missense_Mutation p.R659Q 0.10 tolerated(0.09) probably_damaging(0.978) TCGA-CV-6938-01 14 76452140 76452140 T A IFT43 Nonsense_Mutation p.L4* 0.09 TCGA-CV-6938-01 15 101719015 101719015 A G CHSY1 Silent p.H329H 0.11 TCGA-CV-6938-01 15 42115756 42115756 G A MAPKBP1 Missense_Mutation p.R1243Q 0.12 tolerated(0.26) benign(0.004) TCGA-CV-6938-01 15 56657880 56657880 G A TEX9 Intron 0.15 TCGA-CV-6938-01 15 57565366 57565366 T A TCF12 Nonsense_Mutation p.C628* 0.17 TCGA-CV-6938-01 15 58357758 58357758 G C ALDH1A2 Missense_Mutation p.P31A 0.07 tolerated(0.38) benign(0) TCGA-CV-6938-01 16 10524589 10524589 C T ATF7IP2 Silent p.L38L 0.12 TCGA-CV-6938-01 16 1537772 1537772 C T PTX4 Missense_Mutation p.R109Q 0.15 deleterious(0.03) possibly_damaging(0.563) TCGA-CV-6938-01 16 20990733 20990733 C G DNAH3 Silent p.L2665L 0.08 TCGA-CV-6938-01 16 31477646 31477646 C T ARMC5 Silent p.P748P 0.08 TCGA-CV-6938-01 16 3296524 3296524 C T MEFV Splice_Site p.X537_splice 0.09 TCGA-CV-6938-01 16 50347892 50347892 C T ADCY7 Silent p.S925S 0.09 TCGA-CV-6938-01 16 67670670 67670670 C T CTCF Nonsense_Mutation p.Q639* 0.12 TCGA-CV-6938-01 16 71718486 71718486 G A PHLPP2 Missense_Mutation p.R210W 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6938-01 16 76482788 76482788 C T CNTNAP4 Silent p.D264D 0.13 TCGA-CV-6938-01 17 17751077 17751077 C T TOM1L2 Missense_Mutation p.E466K 0.07 deleterious(0) possibly_damaging(0.881) TCGA-CV-6938-01 17 26901251 26901251 A G ALDOC Silent p.A211A 0.09 TCGA-CV-6938-01 17 31322569 31322569 T A SPACA3 Silent p.A59A 0.17 TCGA-CV-6938-01 17 37901747 37901747 C T GRB7 Missense_Mutation p.R412W 0.12 tolerated(0.07) benign(0.007) TCGA-CV-6938-01 17 38027749 38027749 C A ZPBP2 Missense_Mutation p.Q93K 0.09 tolerated(1) benign(0.002) TCGA-CV-6938-01 17 39254188 39254188 C A KRTAP4-8 Missense_Mutation p.C50F 0.19 deleterious(0) unknown(0) TCGA-CV-6938-01 17 40818790 40818790 A T TUBG2 Missense_Mutation p.Y443F 0.07 tolerated(0.09) probably_damaging(0.993) TCGA-CV-6938-01 17 4684093 4684093 C G TM4SF5 Missense_Mutation p.P63A 0.22 deleterious(0.01) probably_damaging(0.948) TCGA-CV-6938-01 17 73870511 73870513 GAG - TRIM47 3'UTR 0.16 TCGA-CV-6938-01 18 33607246 33607246 C T RPRD1A Missense_Mutation p.D172N 0.08 tolerated(0.13) benign(0.027) TCGA-CV-6938-01 19 16688252 16688252 C T MED26 Missense_Mutation p.R130H 0.14 deleterious(0.01) possibly_damaging(0.564) TCGA-CV-6938-01 19 36215919 36215919 T - KMT2B Frame_Shift_Del p.N1156Mfs*26 0.13 TCGA-CV-6938-01 19 36218428 36218429 - A KMT2B Frame_Shift_Ins p.A1404Gfs*274 0.09 TCGA-CV-6938-01 19 38190161 38190161 G A ZNF607 Missense_Mutation p.R291C 0.11 tolerated(0.12) benign(0.087) TCGA-CV-6938-01 19 43428922 43428922 T A PSG7 3'UTR 0.10 TCGA-CV-6938-01 19 57175375 57175375 C T ZNF835 Missense_Mutation p.A398T 0.12 tolerated(0.23) benign(0.022) TCGA-CV-6938-01 19 9066795 9066795 G A MUC16 Missense_Mutation p.T6884I 0.11 unknown(0) TCGA-CV-6938-01 19 9091710 9091711 - G MUC16 Frame_Shift_Ins p.G36Rfs*7 0.13 TCGA-CV-6938-01 1 110038890 110038890 G A CYB561D1 3'UTR 0.08 TCGA-CV-6938-01 1 12416557 12416557 A G VPS13D Missense_Mutation p.Y3325C 0.22 probably_damaging(0.993) TCGA-CV-6938-01 1 152083257 152083257 C T TCHH Silent p.P812P 0.09 TCGA-CV-6938-01 1 152279952 152279952 A T FLG Missense_Mutation p.S2470R 0.08 benign(0.011) TCGA-CV-6938-01 1 156206091 156206091 G T PMF1 Intron 0.07 TCGA-CV-6938-01 1 161953756 161953756 C T OLFML2B Silent p.A654A 0.14 TCGA-CV-6938-01 1 204394760 204394760 T A PIK3C2B Missense_Mutation p.N1566I 0.14 deleterious(0) probably_damaging(1) TCGA-CV-6938-01 1 205899105 205899105 G T SLC26A9 Missense_Mutation p.A211D 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-6938-01 1 209969692 209969692 C G IRF6 Splice_Site p.X127_splice 0.10 TCGA-CV-6938-01 1 213146032 213146032 G A VASH2 Missense_Mutation p.R159H 0.11 tolerated(0.2) benign(0.004) TCGA-CV-6938-01 1 220824023 220824023 C T MARK1 Missense_Mutation p.T511I 0.12 deleterious(0.01) benign(0.025) TCGA-CV-6938-01 1 230841942 230841942 C T AGT Silent p.K287K 0.11 TCGA-CV-6938-01 1 230846071 230846071 C T AGT Missense_Mutation p.D176N 0.09 deleterious(0.01) probably_damaging(0.984) TCGA-CV-6938-01 1 244579342 244579342 G A ADSS Missense_Mutation p.T370M 0.09 deleterious(0.02) benign(0.019) TCGA-CV-6938-01 1 247014644 247014644 T A AHCTF1 Missense_Mutation p.Y1564F 0.11 tolerated(0.07) benign(0.377) TCGA-CV-6938-01 1 26769228 26769228 C T DHDDS Missense_Mutation p.R63W 0.28 deleterious(0) benign(0.378) TCGA-CV-6938-01 1 33795788 33795788 C T PHC2 Missense_Mutation p.V677M 0.10 tolerated(0.22) possibly_damaging(0.815) TCGA-CV-6938-01 1 8074054 8074054 C T ERRFI1 Missense_Mutation p.R202H 0.15 deleterious(0) probably_damaging(0.998) TCGA-CV-6938-01 1 9022705 9022705 C T CA6 Silent p.I187I 0.14 TCGA-CV-6938-01 1 92948573 92948573 G A GFI1 Missense_Mutation p.A49V 0.17 tolerated(0.13) benign(0.039) TCGA-CV-6938-01 20 25604502 25604502 A T NANP Missense_Mutation p.M28K 0.10 tolerated(0.14) benign(0.008) TCGA-CV-6938-01 20 35748234 35748234 C T MROH8 Missense_Mutation p.R773Q 0.11 tolerated(1) benign(0.007) TCGA-CV-6938-01 20 42213608 42213608 C G SGK2 Missense_Mutation p.F412L 0.11 deleterious(0) probably_damaging(0.967) TCGA-CV-6938-01 20 62197118 62197118 C T HELZ2 Silent p.T1019T 0.16 TCGA-CV-6938-01 21 38877706 38877706 G C DYRK1A Missense_Mutation p.D454H 0.08 deleterious(0) probably_damaging(0.98) TCGA-CV-6938-01 22 16287402 16287402 C T POTEH Missense_Mutation p.D162N 0.08 deleterious(0.05) benign(0.105) TCGA-CV-6938-01 22 19754406 19754406 G A TBX1 3'UTR 0.11 TCGA-CV-6938-01 22 24583660 24583660 C G SUSD2 Silent p.L671L 0.10 TCGA-CV-6938-01 22 24953663 24953663 T A SNRPD3 Silent p.I7I 0.12 TCGA-CV-6938-01 22 41547861 41547861 G A EP300 Missense_Mutation p.E948K 0.13 possibly_damaging(0.622) TCGA-CV-6938-01 2 141130669 141130669 C T LRP1B Missense_Mutation p.R3559Q 0.21 benign(0) TCGA-CV-6938-01 2 179477175 179477175 C T TTN Missense_Mutation p.V16693I 0.13 TCGA-CV-6938-01 2 196605563 196605563 C G DNAH7 Missense_Mutation p.G3932A 0.12 deleterious(0) probably_damaging(0.988) TCGA-CV-6938-01 2 202151199 202151199 C T CASP8 Missense_Mutation p.T500I 0.11 deleterious(0) probably_damaging(0.947) TCGA-CV-6938-01 2 219131638 219131638 C T AAMP Missense_Mutation p.G156S 0.27 deleterious(0) probably_damaging(1) TCGA-CV-6938-01 2 54041718 54041718 A T ERLEC1 Missense_Mutation p.D422V 0.11 deleterious(0) probably_damaging(0.973) TCGA-CV-6938-01 2 69472570 69472570 A G ANTXR1 Missense_Mutation p.N550D 0.10 tolerated_low_confidence(0.14) unknown(0) TCGA-CV-6938-01 2 95942354 95942354 G A PROM2 Missense_Mutation p.V211M 0.10 tolerated(0.1) benign(0.243) TCGA-CV-6938-01 2 97427064 97427064 G A CNNM4 Missense_Mutation p.E110K 0.15 tolerated(0.61) benign(0.027) TCGA-CV-6938-01 2 98779314 98779314 G C VWA3B Missense_Mutation p.G330A 0.13 tolerated(0.17) probably_damaging(0.999) TCGA-CV-6938-01 3 119263487 119263487 C A CD80 Missense_Mutation p.D110Y 0.10 deleterious(0) probably_damaging(1) TCGA-CV-6938-01 3 121208599 121208599 G A POLQ Missense_Mutation p.S1060F 0.07 deleterious_low_confidence(0.03) benign(0.041) TCGA-CV-6938-01 3 121345772 121345772 C T FBXO40 3'UTR 0.15 TCGA-CV-6938-01 3 122642482 122642482 G A SEMA5B Silent p.N472N 0.11 TCGA-CV-6938-01 3 134670357 134670357 C T EPHB1 Missense_Mutation p.R90C 0.09 deleterious(0) probably_damaging(0.953) TCGA-CV-6938-01 3 31712335 31712335 T C OSBPL10 Missense_Mutation p.T623A 0.09 tolerated(0.34) benign(0.052) TCGA-CV-6938-01 3 41275708 41275708 C T CTNNB1 Nonsense_Mutation p.R535* 0.13 TCGA-CV-6938-01 3 41277959 41277960 AG - CTNNB1 Frame_Shift_Del p.E642Vfs*5 0.09 TCGA-CV-6938-01 3 46539589 46539589 C A RTP3 Missense_Mutation p.Q13K 0.11 deleterious(0) probably_damaging(0.971) TCGA-CV-6938-01 4 187524190 187524190 T C FAT1 Splice_Site p.X3784_splice 0.22 TCGA-CV-6938-01 4 70352332 70352332 A G UGT2B4 Missense_Mutation p.L362P 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-6938-01 4 71510266 71510266 G A ENAM Silent p.E1041E 0.11 TCGA-CV-6938-01 4 76721831 76721831 A C USO1 Silent p.L590L 0.10 TCGA-CV-6938-01 4 8305956 8305956 C G HTRA3 Silent p.V382V 0.11 TCGA-CV-6938-01 5 131396411 131396411 G T IL3 Silent p.L4L 0.06 TCGA-CV-6938-01 5 140229894 140229894 C T PCDHA9 Missense_Mutation p.A605V 0.09 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-CV-6938-01 5 140250227 140250227 C T PCDHA11 Silent p.S513S 0.13 TCGA-CV-6938-01 5 149501528 149501528 G - PDGFRB Frame_Shift_Del p.M754Cfs*4 0.16 TCGA-CV-6938-01 5 156479608 156479608 G C HAVCR1 Missense_Mutation p.T146R 0.11 tolerated(0.42) unknown(0) TCGA-CV-6938-01 5 158522653 158522653 C T EBF1 Missense_Mutation p.R129H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-6938-01 5 167643922 167643922 G A TENM2 Missense_Mutation p.A1410T 0.08 tolerated(0.28) benign(0) TCGA-CV-6938-01 5 24537731 24537731 C T CDH10 Missense_Mutation p.G95E 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-6938-01 5 72285313 72285313 A G FCHO2 Missense_Mutation p.N62S 0.20 tolerated(0.1) benign(0.249) TCGA-CV-6938-01 5 82817330 82817330 G A VCAN Missense_Mutation p.D1069N 0.15 tolerated(0.06) benign(0.023) TCGA-CV-6938-01 5 90074703 90074703 T C GPR98 Missense_Mutation p.S4291P 0.09 possibly_damaging(0.887) TCGA-CV-6938-01 6 117050816 117050816 T C KPNA5 Silent p.L448L 0.12 TCGA-CV-6938-01 6 125619867 125619867 C T HDDC2 Missense_Mutation p.R101Q 0.09 tolerated(0.1) benign(0.087) TCGA-CV-6938-01 6 149901732 149901732 G A GINM1 Missense_Mutation p.S197N 0.14 tolerated(0.33) benign(0.436) TCGA-CV-6938-01 6 17669742 17669742 G C NUP153 Silent p.L296L 0.12 TCGA-CV-6938-01 6 25726614 25726614 C T HIST1H2AA Missense_Mutation p.A48T 0.06 deleterious_low_confidence(0.02) benign(0.322) TCGA-CV-6938-01 6 26205053 26205053 G C HIST1H4E Missense_Mutation p.V61L 0.09 deleterious(0.05) benign(0.009) TCGA-CV-6938-01 6 27834947 27834947 G C HIST1H1B Missense_Mutation p.P121A 0.13 tolerated(0.1) unknown(0) TCGA-CV-6938-01 6 42712835 42712836 - G TBCC Frame_Shift_Ins p.R326Pfs*13 0.12 TCGA-CV-6938-01 6 56765371 56765371 C T DST Missense_Mutation p.A89T 0.13 tolerated_low_confidence(0.05) benign(0.002) TCGA-CV-6938-01 6 69640514 69640514 G T BAI3 Missense_Mutation p.R274M 0.16 deleterious(0.03) benign(0.254) TCGA-CV-6938-01 7 106509928 106509928 G C PIK3CG Missense_Mutation p.R641T 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-6938-01 7 126698170 126698170 G A GRM8 Intron 0.23 TCGA-CV-6938-01 7 135047645 135047645 G A CNOT4 Missense_Mutation p.R712C 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CV-6938-01 7 143088618 143088618 G A EPHA1 Nonsense_Mutation p.Q955* 0.14 TCGA-CV-6938-01 7 154561208 154561208 G A DPP6 Missense_Mutation p.R322H 0.11 tolerated(0.2) probably_damaging(0.932) TCGA-CV-6938-01 7 31377952 31377952 C G NEUROD6 Missense_Mutation p.D311H 0.11 deleterious(0) benign(0.116) TCGA-CV-6938-01 7 4014086 4014086 A T SDK1 Missense_Mutation p.S635C 0.18 deleterious(0) probably_damaging(0.971) TCGA-CV-6938-01 7 95157420 95157420 G C ASB4 Missense_Mutation p.W261C 0.09 deleterious(0.03) probably_damaging(0.971) TCGA-CV-6938-01 8 145003892 145003892 C T PLEC Missense_Mutation p.E1086K 0.32 unknown(0) TCGA-CV-6938-01 8 24333985 24333985 C T ADAM7 Nonsense_Mutation p.R225* 0.10 TCGA-CV-6938-01 8 24811239 24811239 G T CTD-2168K21.2 5'Flank 0.13 TCGA-CV-6938-01 8 43152233 43152233 C G POTEA RNA 0.04 TCGA-CV-6938-01 8 48733339 48733339 G A PRKDC Nonsense_Mutation p.Q3092* 0.25 TCGA-CV-6938-01 8 72951161 72951161 G T TRPA1 Missense_Mutation p.A745D 0.11 tolerated(0.54) possibly_damaging(0.886) TCGA-CV-6938-01 9 101611399 101611399 C T GALNT12 3'UTR 0.16 TCGA-CV-6938-01 9 131348167 131348167 G A SPTAN1 Missense_Mutation p.E901K 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-6938-01 9 134165490 134165490 C T PPAPDC3 Missense_Mutation p.R36C 0.27 deleterious(0.01) possibly_damaging(0.642) TCGA-CV-6938-01 9 139402475 139402475 C - NOTCH1 Frame_Shift_Del p.E1148Sfs*31 0.09 TCGA-CV-6938-01 9 139694847 139694847 C T CCDC183 Missense_Mutation p.R149C 0.15 deleterious(0.02) probably_damaging(1) TCGA-CV-6938-01 9 139878139 139878139 C T LCNL1 Missense_Mutation p.A34V 0.08 tolerated(0.08) possibly_damaging(0.86) TCGA-CV-6938-01 X 117043397 117043397 G C KLHL13 Silent p.V414V 0.18 TCGA-CV-6938-01 X 119565263 119565263 G A LAMP2 Intron 0.21 TCGA-CV-6938-01 X 139866350 139866350 G A CDR1 Missense_Mutation p.T61M 0.27 tolerated(0.22) possibly_damaging(0.566) TCGA-CV-6938-01 X 142718785 142718785 G A SLITRK4 Missense_Mutation p.S47L 0.26 deleterious(0.03) benign(0) TCGA-CV-6938-01 X 153689702 153689702 C T PLXNA3 Silent p.G286G 0.29 TCGA-CV-6939-01 10 117884861 117884861 C T GFRA1 Missense_Mutation p.C214Y 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6939-01 10 135195045 135195045 C A PAOX Silent p.I250I 0.15 TCGA-CV-6939-01 11 120957788 120957788 G C TBCEL Missense_Mutation p.E420Q 0.35 tolerated(0.19) benign(0.064) TCGA-CV-6939-01 11 66191328 66191328 C T NPAS4 Missense_Mutation p.R323C 0.23 deleterious(0) probably_damaging(0.994) TCGA-CV-6939-01 11 66627262 66627262 G T LRFN4 Missense_Mutation p.A502S 0.25 tolerated(0.25) benign(0.186) TCGA-CV-6939-01 11 71725192 71725192 G A NUMA1 Silent p.G1119G 0.34 TCGA-CV-6939-01 12 112182675 112182675 C T ACAD10 Missense_Mutation p.S679L 0.06 deleterious(0.05) benign(0.376) TCGA-CV-6939-01 13 49039220 49039220 A - RB1 Frame_Shift_Del p.N767Ifs*43 0.25 TCGA-CV-6939-01 13 88329290 88329290 G - SLITRK5 Frame_Shift_Del p.D550Tfs*3 0.19 TCGA-CV-6939-01 14 103363738 103363738 G A TRAF3 Silent p.Q320Q 0.16 TCGA-CV-6939-01 15 56130006 56130006 T G NEDD4 Missense_Mutation p.Q1095P 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-6939-01 15 91040514 91040516 TCG - IQGAP1 Nonsense_Mutation p.F1601_E1602delins* 0.23 TCGA-CV-6939-01 16 30387481 30387481 G T MYLPF Missense_Mutation p.D38Y 0.15 deleterious(0) probably_damaging(1) TCGA-CV-6939-01 16 67335719 67335719 G C KCTD19 Silent p.A250A 0.08 TCGA-CV-6939-01 17 18055176 18055176 G A MYO15A Missense_Mutation p.V2602M 0.19 unknown(0) TCGA-CV-6939-01 17 7942598 7942598 G T ALOX15B Missense_Mutation p.G42V 0.22 deleterious(0) probably_damaging(1) TCGA-CV-6939-01 18 64172339 64172339 C A CDH19 Nonsense_Mutation p.E677* 0.26 TCGA-CV-6939-01 19 44981990 44981990 A G ZNF180 Silent p.H236H 0.12 TCGA-CV-6939-01 1 101490909 101490909 G A DPH5 Silent p.L31L 0.07 TCGA-CV-6939-01 1 10725438 10725438 A T CASZ1 Silent p.P69P 0.19 TCGA-CV-6939-01 1 145438932 145438932 G A TXNIP Missense_Mutation p.V44I 0.29 deleterious(0.04) benign(0.019) TCGA-CV-6939-01 1 183195980 183195980 C G LAMC2 Missense_Mutation p.A405G 0.06 tolerated(0.06) possibly_damaging(0.732) TCGA-CV-6939-01 1 237037074 237037074 G A MTR Missense_Mutation p.V803I 0.13 tolerated(0.28) possibly_damaging(0.764) TCGA-CV-6939-01 1 237037075 237037075 T A MTR Missense_Mutation p.V803D 0.13 deleterious(0) probably_damaging(0.996) TCGA-CV-6939-01 1 23885665 23885665 C - ID3 Frame_Shift_Del p.A85Pfs*41 0.29 TCGA-CV-6939-01 1 248201982 248201982 G C OR2L2 Missense_Mutation p.R138T 0.03 tolerated(0.09) benign(0.021) TCGA-CV-6939-01 1 27124415 27124415 G T PIGV 3'UTR 0.29 TCGA-CV-6939-01 1 46543232 46543232 C T PIK3R3 Missense_Mutation p.R90Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-CV-6939-01 1 47399867 47399867 C T CYP4A11 Missense_Mutation p.D357N 0.31 tolerated(0.09) benign(0.25) TCGA-CV-6939-01 1 55139731 55139731 C T MROH7 Missense_Mutation p.L615F 0.20 deleterious(0) probably_damaging(0.932) TCGA-CV-6939-01 20 13856747 13856747 C A SEL1L2 Silent p.G347G 0.06 TCGA-CV-6939-01 20 31973565 31973565 C T CDK5RAP1 Missense_Mutation p.R256Q 0.08 deleterious(0) probably_damaging(1) TCGA-CV-6939-01 20 62660829 62660829 T C PRPF6 Missense_Mutation p.L844P 0.18 deleterious(0) probably_damaging(1) TCGA-CV-6939-01 22 50307071 50307071 G A ALG12 Missense_Mutation p.S86L 0.08 possibly_damaging(0.625) TCGA-CV-6939-01 2 110053585 110053585 G C SH3RF3 Missense_Mutation p.R604P 0.26 deleterious(0) possibly_damaging(0.604) TCGA-CV-6939-01 2 170099522 170099522 G A LRP2 Missense_Mutation p.T1204I 0.33 benign(0.004) TCGA-CV-6939-01 3 130452855 130452855 G C PIK3R4 Silent p.A329A 0.17 TCGA-CV-6939-01 3 142985669 142985669 G A SLC9A9 Silent p.L605L 0.30 TCGA-CV-6939-01 4 107092375 107092382 AGTCCAAC - TBCK Frame_Shift_Del p.C702Sfs*2 0.10 TCGA-CV-6939-01 4 15556747 15556747 G A CC2D2A Missense_Mutation p.D847N 0.33 tolerated(0.24) benign(0.382) TCGA-CV-6939-01 5 154296703 154296703 C T GEMIN5 Silent p.L570L 0.08 TCGA-CV-6939-01 7 43484116 43484116 A C HECW1 Missense_Mutation p.I449L 0.12 tolerated_low_confidence(0.52) benign(0) TCGA-CV-6939-01 8 42552689 42552689 G A CHRNB3 5'UTR 0.17 TCGA-CV-6939-01 8 73921394 73921394 C T TERF1 Silent p.R91R 0.23 TCGA-CV-6939-01 9 134386815 134386815 C G POMT1 Missense_Mutation p.P338R 0.22 deleterious(0.03) possibly_damaging(0.887) TCGA-CV-6939-01 9 137801845 137801845 G A FCN1 Silent p.D260D 0.17 TCGA-CV-6939-01 9 32631389 32631389 G A TAF1L Missense_Mutation p.R1397C 0.18 deleterious(0) possibly_damaging(0.727) TCGA-CV-6939-01 X 153667402 153667402 T G GDI1 Missense_Mutation p.F102V 0.41 deleterious(0) probably_damaging(0.963) TCGA-CV-6939-01 X 70339729 70339729 T G MED12 Splice_Site p.X132_splice 0.33 TCGA-CV-6940-01 10 135347301 135347301 C G CYP2E1 Missense_Mutation p.I289M 0.18 tolerated(0.07) possibly_damaging(0.823) TCGA-CV-6940-01 10 135438868 135438868 G A FRG2B Missense_Mutation p.A191V 0.08 tolerated(0.74) benign(0.26) TCGA-CV-6940-01 10 49634078 49634079 TT - MAPK8 Frame_Shift_Del p.F280Pfs*3 0.23 TCGA-CV-6940-01 10 50678260 50678260 T A ERCC6 Missense_Mutation p.D1249V 0.56 deleterious(0) probably_damaging(0.996) TCGA-CV-6940-01 10 73050851 73050851 A C UNC5B Missense_Mutation p.K427Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-6940-01 11 102663445 102663445 G C MMP1 Missense_Mutation p.F308L 0.31 tolerated(0.64) benign(0.001) TCGA-CV-6940-01 11 11374111 11374111 G C CSNK2A3 Missense_Mutation p.Q186E 0.31 tolerated(0.21) possibly_damaging(0.463) TCGA-CV-6940-01 11 34988327 34988327 C T PDHX Missense_Mutation p.P261L 0.36 deleterious(0) benign(0.394) TCGA-CV-6940-01 11 51516007 51516007 C T OR4C46 Silent p.I242I 0.34 TCGA-CV-6940-01 11 64009862 64009862 G T FKBP2 Translation_Start_Site p.M1? 0.12 deleterious(0.01) benign(0.023) TCGA-CV-6940-01 11 64011493 64011493 G C FKBP2 Missense_Mutation p.E141Q 0.11 deleterious(0.01) possibly_damaging(0.848) TCGA-CV-6940-01 11 64390422 64390422 C T NRXN2 Missense_Mutation p.E1326K 0.79 deleterious(0.02) possibly_damaging(0.816) TCGA-CV-6940-01 11 71148918 71148918 G A DHCR7 Silent p.H301H 0.11 TCGA-CV-6940-01 12 106821034 106821034 T A POLR3B Silent p.I387I 0.13 TCGA-CV-6940-01 12 109863801 109863801 C G MYO1H Missense_Mutation p.I576M 0.25 tolerated(1) benign(0.007) TCGA-CV-6940-01 12 122723220 122723220 C A VPS33A Missense_Mutation p.V406L 0.32 deleterious(0.01) benign(0.443) TCGA-CV-6940-01 12 124107222 124107222 G A EIF2B1 Silent p.L238L 0.16 TCGA-CV-6940-01 12 130184841 130184841 G T TMEM132D Missense_Mutation p.A161D 0.19 deleterious(0.02) benign(0.138) TCGA-CV-6940-01 12 133245062 133245062 G A POLE Missense_Mutation p.R685W 0.31 deleterious(0.04) possibly_damaging(0.662) TCGA-CV-6940-01 12 42792759 42792759 C G PPHLN1 Missense_Mutation p.S291C 0.32 deleterious(0.03) benign(0.316) TCGA-CV-6940-01 12 44913891 44913891 C G NELL2 Missense_Mutation p.R816P 0.12 tolerated(0.34) possibly_damaging(0.836) TCGA-CV-6940-01 12 52912854 52912854 C A KRT5 Nonsense_Mutation p.E216* 0.34 TCGA-CV-6940-01 12 56087845 56087845 G A ITGA7 Missense_Mutation p.S836F 0.16 deleterious(0.02) benign(0.029) TCGA-CV-6940-01 12 59279610 59279610 C T LRIG3 Intron 0.14 TCGA-CV-6940-01 12 9162218 9162218 G A KLRG1 3'UTR 0.30 TCGA-CV-6940-01 13 100982841 100982841 C T PCCA Nonsense_Mutation p.R486* 0.13 TCGA-CV-6940-01 13 108863582 108863582 G C LIG4 Missense_Mutation p.S12C 0.24 deleterious(0) possibly_damaging(0.572) TCGA-CV-6940-01 13 36050072 36050072 G A MAB21L1 Silent p.V68V 0.27 TCGA-CV-6940-01 13 47012010 47012010 C T PPP1R2P4 RNA 0.29 TCGA-CV-6940-01 13 61987588 61987588 G A PCDH20 Missense_Mutation p.S215L 0.22 tolerated(0.16) benign(0.166) TCGA-CV-6940-01 13 99476728 99476728 C A DOCK9 Missense_Mutation p.R1685M 0.26 tolerated(0.16) probably_damaging(0.967) TCGA-CV-6940-01 14 19574288 19574288 C A POTEG Missense_Mutation p.P449T 0.14 tolerated(0.07) benign(0.062) TCGA-CV-6940-01 14 24114362 24114362 C G DHRS2 Missense_Mutation p.Q252E 0.23 tolerated_low_confidence(0.05) benign(0.001) TCGA-CV-6940-01 15 102462360 102462360 A G OR4F4 Silent p.S301S 0.07 TCGA-CV-6940-01 15 34380295 34380295 G A EMC7 Silent p.L179L 0.11 TCGA-CV-6940-01 15 40655921 40655921 C T DISP2 Missense_Mutation p.P72L 0.34 deleterious_low_confidence(0.01) benign(0.006) TCGA-CV-6940-01 15 42132731 42132731 C G PLA2G4B Missense_Mutation p.S262C 0.19 deleterious(0) possibly_damaging(0.707) TCGA-CV-6940-01 15 42132977 42132977 C T PLA2G4B Silent p.V306V 0.24 TCGA-CV-6940-01 15 42133453 42133453 C T PLA2G4B Silent p.V370V 0.17 TCGA-CV-6940-01 15 42134775 42134775 G A PLA2G4B Silent p.L474L 0.15 TCGA-CV-6940-01 15 44158387 44158387 G A WDR76 Missense_Mutation p.E560K 0.21 deleterious(0) possibly_damaging(0.636) TCGA-CV-6940-01 15 45408913 45408913 C T DUOXA2 Silent p.A180A 0.24 TCGA-CV-6940-01 15 65678901 65678901 C T IGDCC4 Missense_Mutation p.R980H 0.22 deleterious(0.01) possibly_damaging(0.551) TCGA-CV-6940-01 15 68605146 68605146 C T ITGA11 Missense_Mutation p.D980N 0.18 tolerated(0.32) benign(0.005) TCGA-CV-6940-01 16 18809332 18809332 C G ARL6IP1 Missense_Mutation p.G69R 0.13 tolerated(0.05) probably_damaging(0.988) TCGA-CV-6940-01 16 20975470 20975470 G C DNAH3 Missense_Mutation p.L3246V 0.25 deleterious(0) probably_damaging(0.979) TCGA-CV-6940-01 16 48382183 48382183 G C LONP2 Silent p.L773L 0.20 TCGA-CV-6940-01 16 53272475 53272475 G A CHD9 Missense_Mutation p.E952K 0.26 possibly_damaging(0.862) TCGA-CV-6940-01 16 70350036 70350036 C T DDX19B Intron 0.27 TCGA-CV-6940-01 16 77775743 77775744 - A NUDT7 Frame_Shift_Ins p.P208Tfs*4 0.24 TCGA-CV-6940-01 17 10296300 10296300 C A MYH8 Nonsense_Mutation p.E1771* 0.19 TCGA-CV-6940-01 17 2323149 2323149 G A METTL16 3'UTR 0.55 TCGA-CV-6940-01 17 26960318 26960318 G A KIAA0100 Silent p.N1189N 0.16 TCGA-CV-6940-01 17 36482452 36482452 C A GPR179 Nonsense_Mutation p.E2334* 0.17 TCGA-CV-6940-01 17 41584941 41584941 T C DHX8 Missense_Mutation p.M665T 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-CV-6940-01 17 48542772 48542772 C T CHAD Missense_Mutation p.D323N 0.17 tolerated(0.13) benign(0.01) TCGA-CV-6940-01 17 5087253 5087253 C T ZNF594 Missense_Mutation p.R100K 0.16 tolerated(1) benign(0.366) TCGA-CV-6940-01 17 61571742 61571742 C G ACE Nonsense_Mutation p.Y1097* 0.08 TCGA-CV-6940-01 17 617910 617910 C G VPS53 Missense_Mutation p.E14Q 0.12 tolerated(0.56) possibly_damaging(0.859) TCGA-CV-6940-01 17 75484325 75484325 T C SEPT9 Missense_Mutation p.I349T 0.38 deleterious(0) probably_damaging(0.994) TCGA-CV-6940-01 17 7577102 7577119 CCAGGACAGGCACAAACA - TP53 In_Frame_Del p.V274_G279del 0.57 TCGA-CV-6940-01 17 76113582 76113582 G A TMC6 Missense_Mutation p.T722I 0.33 tolerated(0.06) benign(0.273) TCGA-CV-6940-01 17 76832439 76832439 T C USP36 Missense_Mutation p.I3V 0.35 deleterious(0.02) possibly_damaging(0.857) TCGA-CV-6940-01 17 80146213 80146213 C G CCDC57 Missense_Mutation p.E312Q 0.28 tolerated(0.25) benign(0.32) TCGA-CV-6940-01 19 14512333 14512333 C T CD97 Silent p.L345L 0.11 TCGA-CV-6940-01 19 33321500 33321500 G A SLC7A9 3'UTR 0.21 TCGA-CV-6940-01 19 51021432 51021432 G A LRRC4B Missense_Mutation p.P513L 0.26 tolerated_low_confidence(0.52) benign(0.017) TCGA-CV-6940-01 19 57335633 57335633 C T PEG3 Missense_Mutation p.E131K 0.12 tolerated(0.05) possibly_damaging(0.673) TCGA-CV-6940-01 1 102312416 102312416 C A OLFM3 Intron 0.15 TCGA-CV-6940-01 1 111146468 111146468 C A KCNA2 Missense_Mutation p.G313C 0.23 deleterious(0) probably_damaging(1) TCGA-CV-6940-01 1 145368630 145368630 G A NBPF10 Silent p.L3536L 0.11 TCGA-CV-6940-01 1 152383333 152383333 C T CRNN Silent p.L75L 0.35 TCGA-CV-6940-01 1 161512759 161512759 A T FCGR3A 3'UTR 0.17 TCGA-CV-6940-01 1 183086740 183086740 G C LAMC1 Missense_Mutation p.D587H 0.62 deleterious(0.03) probably_damaging(0.988) TCGA-CV-6940-01 1 190068199 190068199 C T BRINP3 Missense_Mutation p.G417D 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-6940-01 1 226923395 226923395 G A ITPKB Missense_Mutation p.P589S 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6940-01 1 6697514 6697514 G A DNAJC11 Silent p.S458S 0.59 TCGA-CV-6940-01 1 70687302 70687302 G C SRSF11 5'UTR 0.21 TCGA-CV-6940-01 1 70819809 70819809 G A ANKRD13C Silent p.L95L 0.73 TCGA-CV-6940-01 1 79412073 79412073 C T ELTD1 Missense_Mutation p.E71K 0.61 deleterious_low_confidence(0.01) benign(0.362) TCGA-CV-6940-01 1 89613381 89613381 G A GBP7 Missense_Mutation p.R412W 0.70 deleterious(0.03) possibly_damaging(0.579) TCGA-CV-6940-01 20 139650 139650 G A DEFB127 Silent p.K95K 0.20 TCGA-CV-6940-01 20 24944531 24944531 T G APMAP Missense_Mutation p.E390A 0.48 deleterious(0) probably_damaging(0.954) TCGA-CV-6940-01 20 34022225 34022225 C A GDF5OS Nonsense_Mutation p.S90* 0.10 TCGA-CV-6940-01 20 34025402 34025402 C T GDF5 Missense_Mutation p.G103S 0.40 tolerated_low_confidence(0.31) benign(0.003) TCGA-CV-6940-01 20 3644019 3644019 G A GFRA4 Silent p.L10L 0.40 TCGA-CV-6940-01 20 47870298 47870298 T A ZNFX1 Missense_Mutation p.I1004L 0.34 deleterious(0.01) benign(0.036) TCGA-CV-6940-01 20 55982844 55982844 C T RBM38 Missense_Mutation p.A221V 0.21 deleterious_low_confidence(0.03) benign(0.001) TCGA-CV-6940-01 21 43338269 43338269 G C C2CD2 Missense_Mutation p.S222C 0.40 tolerated(0.1) possibly_damaging(0.789) TCGA-CV-6940-01 21 47737162 47737162 C G C21orf58 Missense_Mutation p.Q110H 0.38 deleterious(0) benign(0.263) TCGA-CV-6940-01 22 18570779 18570779 C T PEX26 Missense_Mutation p.L286F 0.33 deleterious(0.04) benign(0.076) TCGA-CV-6940-01 22 24379500 24379500 A G GSTT1 Missense_Mutation p.L71P 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6940-01 22 36657700 36657700 G A APOL1 Silent p.Q98Q 0.24 TCGA-CV-6940-01 22 42463795 42463795 G C NAGA Missense_Mutation p.H100D 0.14 tolerated(0.47) benign(0.019) TCGA-CV-6940-01 22 49042418 49042418 C T FAM19A5 Missense_Mutation p.A41V 0.29 tolerated(0.2) benign(0.268) TCGA-CV-6940-01 2 166764213 166764213 C A TTC21B Missense_Mutation p.G848V 0.32 deleterious(0.03) benign(0.04) TCGA-CV-6940-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.34 deleterious(0) probably_damaging(1) TCGA-CV-6940-01 2 179479114 179479114 C A TTN Intron 0.17 TCGA-CV-6940-01 2 179606289 179606289 T G TTN Missense_Mutation p.T3891P 0.12 TCGA-CV-6940-01 2 18112572 18112572 C T KCNS3 Silent p.F99F 0.32 TCGA-CV-6940-01 2 18113212 18113212 C T KCNS3 Silent p.L313L 0.29 TCGA-CV-6940-01 2 220078866 220078866 G A ABCB6 Nonsense_Mutation p.R477* 0.24 TCGA-CV-6940-01 2 43452849 43452849 C T ZFP36L2 Missense_Mutation p.D32N 0.26 tolerated(0.17) probably_damaging(0.945) TCGA-CV-6940-01 2 70444000 70444000 C G TIA1 Intron 0.16 TCGA-CV-6940-01 2 75347732 75347732 C T TACR1 Nonsense_Mutation p.W184* 0.13 TCGA-CV-6940-01 2 99448936 99448936 G A KIAA1211L Missense_Mutation p.P139S 0.31 deleterious(0.04) possibly_damaging(0.803) TCGA-CV-6940-01 3 101578333 101578334 - A NFKBIZ 3'UTR 0.28 TCGA-CV-6940-01 3 113497631 113497631 G A ATP6V1A Missense_Mutation p.D11N 0.11 tolerated_low_confidence(0.06) benign(0.014) TCGA-CV-6940-01 3 121340738 121340738 T C FBXO40 Silent p.T154T 0.50 TCGA-CV-6940-01 3 148614530 148614530 C T CPA3 3'UTR 0.05 TCGA-CV-6940-01 3 148880010 148880010 G A HPS3 Missense_Mutation p.E728K 0.13 tolerated(0.08) benign(0.064) TCGA-CV-6940-01 3 15642612 15642612 C G HACL1 Missense_Mutation p.M57I 0.26 deleterious(0.01) possibly_damaging(0.593) TCGA-CV-6940-01 3 170198315 170198315 C A SLC7A14 Missense_Mutation p.G586C 0.16 deleterious(0) probably_damaging(0.933) TCGA-CV-6940-01 3 180359892 180359892 C A CCDC39 Missense_Mutation p.R588I 0.25 deleterious(0) possibly_damaging(0.8) TCGA-CV-6940-01 3 183707056 183707056 T C ABCC5 Missense_Mutation p.H82R 0.30 tolerated(0.43) benign(0.017) TCGA-CV-6940-01 3 194167697 194167697 T C ATP13A3 Missense_Mutation p.I486V 0.33 deleterious(0.01) possibly_damaging(0.776) TCGA-CV-6940-01 3 49156626 49156626 C T USP19 5'UTR 0.40 TCGA-CV-6940-01 3 49570156 49570156 G C DAG1 Missense_Mutation p.D738H 0.20 tolerated(0.12) probably_damaging(0.956) TCGA-CV-6940-01 3 57616485 57616485 G C DENND6A Missense_Mutation p.Q492E 0.30 deleterious(0) probably_damaging(0.953) TCGA-CV-6940-01 3 9488977 9488977 T C SETD5 Missense_Mutation p.S590P 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-CV-6940-01 4 100534246 100534246 C T MTTP Silent p.G722G 0.15 TCGA-CV-6940-01 4 166231784 166231784 C T KLHL2 Silent p.Y377Y 0.19 TCGA-CV-6940-01 4 167675844 167675844 G C SPOCK3 Nonsense_Mutation p.S252* 0.20 TCGA-CV-6940-01 4 48036925 48036925 C T NIPAL1 Silent p.N163N 0.48 TCGA-CV-6940-01 4 48172263 48172263 A C TEC Splice_Site p.X152_splice 0.22 TCGA-CV-6940-01 4 76794404 76794404 C T PPEF2 Missense_Mutation p.R461Q 0.54 deleterious(0) probably_damaging(1) TCGA-CV-6940-01 4 88583266 88583266 C A DMP1 Missense_Mutation p.D112E 0.52 deleterious(0) probably_damaging(0.998) TCGA-CV-6940-01 5 176308438 176308438 G T HK3 Missense_Mutation p.A831D 0.12 deleterious(0.01) probably_damaging(1) TCGA-CV-6940-01 5 176477792 176477792 C A ZNF346 Missense_Mutation p.F186L 0.23 deleterious(0.03) possibly_damaging(0.88) TCGA-CV-6940-01 5 179294796 179294796 C T TBC1D9B Missense_Mutation p.E949K 0.38 deleterious(0.02) benign(0.016) TCGA-CV-6940-01 6 100911241 100911241 G A SIM1 Missense_Mutation p.S35L 0.20 deleterious(0) probably_damaging(0.954) TCGA-CV-6940-01 6 111067348 111067348 G A CDK19 Missense_Mutation p.S62L 0.07 deleterious(0.01) probably_damaging(0.951) TCGA-CV-6940-01 6 127607982 127607982 G A RNF146 Missense_Mutation p.R75Q 0.18 deleterious(0) probably_damaging(0.924) TCGA-CV-6940-01 6 151671694 151671694 C T AKAP12 Missense_Mutation p.T723M 0.08 tolerated(0.09) possibly_damaging(0.714) TCGA-CV-6940-01 6 151672232 151672232 A G AKAP12 Silent p.A902A 0.26 TCGA-CV-6940-01 6 160908301 160908301 C G LPAL2 Intron 0.22 TCGA-CV-6940-01 6 29429505 29429505 G T OR2H1 5'UTR 0.55 TCGA-CV-6940-01 6 30881710 30881710 G - GTF2H4 Frame_Shift_Del p.H448Tfs*50 0.17 TCGA-CV-6940-01 6 71232223 71232223 G C FAM135A Missense_Mutation p.R346T 0.15 deleterious(0.01) benign(0.26) TCGA-CV-6940-01 6 90434920 90434920 G A MDN1 Nonsense_Mutation p.Q1890* 0.20 TCGA-CV-6940-01 7 111517169 111517169 C T DOCK4 Missense_Mutation p.G554E 0.59 tolerated(0.14) possibly_damaging(0.635) TCGA-CV-6940-01 7 139829433 139829433 T C KDM7A Missense_Mutation p.K140R 0.32 tolerated(0.43) benign(0.015) TCGA-CV-6940-01 7 141619410 141619410 C T OR9A4 Silent p.F245F 0.06 TCGA-CV-6940-01 7 150741174 150741174 G A ABCB8 Missense_Mutation p.E628K 0.21 deleterious(0.01) possibly_damaging(0.794) TCGA-CV-6940-01 7 23830531 23830531 C G STK31 Nonsense_Mutation p.S909* 0.24 TCGA-CV-6940-01 7 26225363 26225363 C T NFE2L3 Missense_Mutation p.S682L 0.24 deleterious(0.02) benign(0.02) TCGA-CV-6940-01 7 73150882 73150882 G T ABHD11 3'UTR 0.16 TCGA-CV-6940-01 7 93055850 93055850 G A CALCR Nonsense_Mutation p.Q449* 0.37 TCGA-CV-6940-01 7 99773453 99773453 G A GPC2 Silent p.Y130Y 0.46 TCGA-CV-6940-01 8 102585906 102585906 C T GRHL2 Nonsense_Mutation p.Q249* 0.41 TCGA-CV-6940-01 8 107773700 107773700 C T ABRA Silent p.Q237Q 0.12 TCGA-CV-6940-01 8 17611659 17611659 A C MTUS1 Missense_Mutation p.L553W 0.21 deleterious(0) possibly_damaging(0.873) TCGA-CV-6940-01 8 25346199 25346199 G A CDCA2 Silent p.K555K 0.21 TCGA-CV-6940-01 8 38034583 38034583 G A BAG4 Missense_Mutation p.G66S 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.735) TCGA-CV-6940-01 8 87423945 87423945 A G WWP1 Silent p.A301A 0.28 TCGA-CV-6940-01 8 94930038 94930038 C G PDP1 Intron 0.47 TCGA-CV-6940-01 9 129974476 129974476 G A RALGPS1 Silent p.L438L 0.25 TCGA-CV-6940-01 9 131566365 131566365 G C TBC1D13 Missense_Mutation p.L295F 0.19 deleterious(0.04) probably_damaging(0.993) TCGA-CV-6940-01 9 135554462 135554462 G T GTF3C4 Missense_Mutation p.G486C 0.15 tolerated(0.12) probably_damaging(0.925) TCGA-CV-6940-01 9 139397641 139397641 G A NOTCH1 Silent p.A1720A 0.16 TCGA-CV-6940-01 9 19371907 19371907 G C DENND4C Intron 0.11 TCGA-CV-6940-01 9 2182188 2182188 G C SMARCA2 Missense_Mutation p.K1469N 0.07 possibly_damaging(0.758) TCGA-CV-6940-01 9 35650526 35650526 C A SIT1 Missense_Mutation p.R70L 0.05 tolerated(0.1) benign(0.209) TCGA-CV-6940-01 9 37731065 37731065 G A FRMPD1 Missense_Mutation p.E275K 0.12 deleterious(0) probably_damaging(0.963) TCGA-CV-6940-01 9 79824394 79824394 C T VPS13A Silent p.I147I 0.29 TCGA-CV-6940-01 9 82187743 82187743 G A TLE4 Missense_Mutation p.R13K 0.16 deleterious(0.02) benign(0.202) TCGA-CV-6940-01 9 98218642 98218642 G A PTCH1 Silent p.I1074I 0.44 TCGA-CV-6940-01 X 105011444 105011444 T C IL1RAPL2 Silent p.C617C 0.10 TCGA-CV-6940-01 X 153694349 153694349 G T PLXNA3 Missense_Mutation p.L868F 0.71 tolerated(0.06) benign(0.131) TCGA-CV-6940-01 X 70367883 70367883 G A NLGN3 Missense_Mutation p.G95D 0.23 tolerated(0.09) benign(0.06) TCGA-CV-6941-01 10 101151322 101151322 G A CNNM1 3'UTR 0.23 TCGA-CV-6941-01 10 104136823 104136823 G A GBF1 Missense_Mutation p.G1473R 0.41 tolerated(0.2) benign(0.108) TCGA-CV-6941-01 10 3823889 3823889 C T KLF6 Missense_Mutation p.C207Y 0.36 deleterious(0) unknown(0) TCGA-CV-6941-01 10 412284 412284 C G DIP2C Silent p.L733L 0.13 TCGA-CV-6941-01 10 44111790 44111790 C T ZNF485 Missense_Mutation p.S100F 0.16 tolerated(0.42) possibly_damaging(0.737) TCGA-CV-6941-01 10 56287615 56287615 T C PCDH15 Silent p.G38G 0.50 TCGA-CV-6941-01 10 5789368 5789368 G A FAM208B Silent p.E1328E 0.32 TCGA-CV-6941-01 10 61832598 61832598 G A ANK3 Nonsense_Mutation p.Q2681* 0.35 TCGA-CV-6941-01 10 85964326 85964326 G A CDHR1 Missense_Mutation p.G276D 0.43 deleterious(0.02) possibly_damaging(0.903) TCGA-CV-6941-01 10 87614311 87614311 A T GRID1 Missense_Mutation p.V392D 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-6941-01 11 104970094 104970094 G A CARD17 Missense_Mutation p.S110F 0.44 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-CV-6941-01 11 31823109 31823109 G T PAX6 Missense_Mutation p.S133R 0.20 deleterious(0) probably_damaging(0.99) TCGA-CV-6941-01 11 33054913 33054913 C T DEPDC7 Missense_Mutation p.S483L 0.22 tolerated(0.13) benign(0.019) TCGA-CV-6941-01 11 35496243 35496243 G A PAMR1 Silent p.S143S 0.27 TCGA-CV-6941-01 11 44626655 44626655 G A CD82 Missense_Mutation p.V62M 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-CV-6941-01 11 46780912 46780912 T A CKAP5 Missense_Mutation p.E1492V 0.20 tolerated(0.06) benign(0.117) TCGA-CV-6941-01 11 4703255 4703255 G A OR51E2 Silent p.S229S 0.24 TCGA-CV-6941-01 11 47739054 47739054 C A FNBP4 Nonsense_Mutation p.E992* 0.26 TCGA-CV-6941-01 11 5474810 5474810 T G OR51I2 Missense_Mutation p.L31R 0.11 deleterious(0) probably_damaging(0.949) TCGA-CV-6941-01 11 56020591 56020591 A G OR5T3 Missense_Mutation p.I306V 0.20 tolerated(1) benign(0.02) TCGA-CV-6941-01 11 57367613 57367613 C A SERPING1 Missense_Mutation p.P105T 0.22 tolerated(0.11) possibly_damaging(0.641) TCGA-CV-6941-01 11 58660167 58660167 G A GLYATL1P2 RNA 0.21 TCGA-CV-6941-01 11 58920865 58920865 G C FAM111A Missense_Mutation p.G575A 0.41 deleterious(0.02) possibly_damaging(0.599) TCGA-CV-6941-01 11 64137240 64137240 C T RPS6KA4 Missense_Mutation p.R558W 0.38 tolerated(0.17) possibly_damaging(0.892) TCGA-CV-6941-01 11 6498296 6498296 G T ARFIP2 3'UTR 0.65 TCGA-CV-6941-01 11 65265527 65265527 C G MALAT1 RNA 0.12 TCGA-CV-6941-01 11 76891461 76891461 G A MYO7A Silent p.E876E 0.38 TCGA-CV-6941-01 12 101510520 101510520 A C ANO4 Silent p.R803R 0.19 TCGA-CV-6941-01 12 102069094 102069094 T C MYBPC1 Missense_Mutation p.V938A 0.20 deleterious(0) possibly_damaging(0.814) TCGA-CV-6941-01 12 120502659 120502659 G T CCDC64 Missense_Mutation p.R295S 0.36 deleterious(0.02) benign(0.223) TCGA-CV-6941-01 12 123187772 123187772 A G HCAR2 Missense_Mutation p.V20A 0.11 tolerated(0.54) benign(0.011) TCGA-CV-6941-01 12 13828794 13828794 C T GRIN2B Splice_Site p.X337_splice 0.31 TCGA-CV-6941-01 12 46321867 46321867 T C SCAF11 Silent p.T539T 0.17 TCGA-CV-6941-01 12 48104564 48104564 C T ENDOU 3'UTR 0.31 TCGA-CV-6941-01 12 51384679 51384679 T A SLC11A2 Missense_Mutation p.M521L 0.50 tolerated(1) benign(0.003) TCGA-CV-6941-01 12 52992876 52992876 C T KRT72 Silent p.Q149Q 0.23 TCGA-CV-6941-01 12 64818925 64818925 T - XPOT Frame_Shift_Del p.S473Qfs*9 0.28 TCGA-CV-6941-01 12 70194071 70194071 T A RAB3IP Missense_Mutation p.I340N 0.24 deleterious(0) probably_damaging(0.971) TCGA-CV-6941-01 12 71148203 71148203 C G PTPRR Intron 0.45 TCGA-CV-6941-01 12 7548986 7548986 C T CD163L1 Silent p.L585L 0.42 TCGA-CV-6941-01 13 113200121 113200121 C T TUBGCP3 Silent p.P409P 0.53 TCGA-CV-6941-01 14 69345238 69345238 C A ACTN1 Missense_Mutation p.K788N 0.57 tolerated(0.12) benign(0.001) TCGA-CV-6941-01 14 81610331 81610331 T A TSHR Nonsense_Mutation p.Y643* 0.37 TCGA-CV-6941-01 14 81610332 81610332 G T TSHR Missense_Mutation p.A644S 0.37 deleterious(0.02) possibly_damaging(0.836) TCGA-CV-6941-01 14 95660246 95660246 C G CLMN Missense_Mutation p.S927T 0.12 deleterious(0.02) possibly_damaging(0.823) TCGA-CV-6941-01 15 20649519 20649519 G T HERC2P3 RNA 0.26 TCGA-CV-6941-01 15 22709650 22709650 C A AC116165.1 5'Flank 0.10 TCGA-CV-6941-01 15 27572157 27572157 A T GABRG3 Nonsense_Mutation p.K158* 0.43 TCGA-CV-6941-01 15 28357012 28357012 A C HERC2 Missense_Mutation p.L4801R 0.29 probably_damaging(0.979) TCGA-CV-6941-01 15 78472020 78472020 C T ACSBG1 Silent p.A452A 0.15 TCGA-CV-6941-01 15 86311556 86311556 T A KLHL25 Missense_Mutation p.I496F 0.40 deleterious(0) probably_damaging(0.996) TCGA-CV-6941-01 16 1035026 1035026 G A SOX8 Silent p.S327S 0.42 TCGA-CV-6941-01 16 2373404 2373404 G T ABCA3 Intron 0.14 TCGA-CV-6941-01 16 30567359 30567359 G A ZNF764 Missense_Mutation p.A128V 0.15 tolerated(0.31) benign(0.035) TCGA-CV-6941-01 16 30667619 30667619 C T PRR14 Missense_Mutation p.P582L 0.12 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CV-6941-01 16 3169975 3169975 C T ZNF205 Silent p.H438H 0.26 TCGA-CV-6941-01 16 55907847 55907847 C A CES5A Missense_Mutation p.G88V 0.58 deleterious(0) probably_damaging(1) TCGA-CV-6941-01 16 721109 721109 A G RHOT2 Missense_Mutation p.I259V 0.29 tolerated(0.08) benign(0.074) TCGA-CV-6941-01 16 89619494 89619494 C T SPG7 Silent p.A629A 0.40 TCGA-CV-6941-01 17 10303904 10303904 C G MYH8 Missense_Mutation p.D1180H 0.31 deleterious(0) probably_damaging(0.995) TCGA-CV-6941-01 17 18065898 18065898 G T MYO15A Splice_Site p.X3173_splice 0.74 TCGA-CV-6941-01 17 34077222 34077222 T A GAS2L2 Silent p.T167T 0.31 TCGA-CV-6941-01 17 39553595 39553595 C T KRT31 Missense_Mutation p.R66H 0.32 deleterious(0.04) probably_damaging(1) TCGA-CV-6941-01 17 43004426 43004426 G A KIF18B Missense_Mutation p.T766I 0.35 deleterious(0.04) possibly_damaging(0.857) TCGA-CV-6941-01 17 48432867 48432867 A G XYLT2 Missense_Mutation p.N338S 0.10 tolerated(0.06) possibly_damaging(0.676) TCGA-CV-6941-01 17 56060238 56060238 G A VEZF1 Nonsense_Mutation p.R184* 0.25 TCGA-CV-6941-01 17 56729334 56729334 G A TEX14 Missense_Mutation p.P10L 0.27 deleterious(0) probably_damaging(1) TCGA-CV-6941-01 17 72209745 72209745 G C TTYH2 Missense_Mutation p.D7H 0.23 deleterious(0.01) possibly_damaging(0.479) TCGA-CV-6941-01 17 7578384 7578401 GCAGCGCTCATGGTGGGG - TP53 In_Frame_Del p.P177_C182del 0.40 TCGA-CV-6941-01 17 77758172 77758172 G A CBX2 Silent p.K310K 0.13 TCGA-CV-6941-01 17 9632373 9632373 C T USP43 3'UTR 0.31 TCGA-CV-6941-01 18 13826243 13826243 G A MC5R Missense_Mutation p.G160E 0.36 tolerated(0.27) possibly_damaging(0.557) TCGA-CV-6941-01 18 15316668 15316668 T A RNU6-721P 3'Flank 0.27 TCGA-CV-6941-01 18 21759702 21759702 C T OSBPL1A Missense_Mutation p.R637Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-CV-6941-01 18 33795646 33795646 C T MOCOS Silent p.A501A 0.29 TCGA-CV-6941-01 19 1051513 1051513 G T ABCA7 Missense_Mutation p.D964Y 0.22 deleterious(0) probably_damaging(1) TCGA-CV-6941-01 19 13054358 13054358 C T CALR Missense_Mutation p.S323F 0.30 deleterious(0) probably_damaging(0.994) TCGA-CV-6941-01 19 18278008 18278008 A T PIK3R2 Missense_Mutation p.E543V 0.42 deleterious(0) benign(0.202) TCGA-CV-6941-01 19 312210 312210 G A MIER2 Silent p.F290F 0.24 TCGA-CV-6941-01 19 35617874 35617874 G A LGI4 Missense_Mutation p.P226S 0.53 tolerated(0.67) benign(0.002) TCGA-CV-6941-01 19 38230129 38230129 T G ZNF573 Missense_Mutation p.K421T 0.25 deleterious(0) probably_damaging(0.997) TCGA-CV-6941-01 19 56572976 56572976 G A NLRP5 3'UTR 0.15 TCGA-CV-6941-01 19 58384572 58384572 T C ZNF814 Missense_Mutation p.Y729C 0.33 tolerated(0.11) benign(0) TCGA-CV-6941-01 19 8032636 8032636 G A ELAVL1 Missense_Mutation p.R157W 0.41 tolerated(0.09) benign(0.021) TCGA-CV-6941-01 1 103345449 103345449 T C COL11A1 Silent p.G1688G 0.37 TCGA-CV-6941-01 1 12887175 12887175 G T PRAMEF11 Missense_Mutation p.R228S 0.12 tolerated(0.23) benign(0.033) TCGA-CV-6941-01 1 1573159 1573159 G A CDK11B Missense_Mutation p.L480F 0.17 unknown(0) TCGA-CV-6941-01 1 162368816 162368816 T C SH2D1B Missense_Mutation p.E87G 0.08 tolerated(0.08) benign(0.132) TCGA-CV-6941-01 1 166927307 166927307 G A ILDR2 Silent p.P26P 0.07 TCGA-CV-6941-01 1 175067683 175067683 C A TNN Missense_Mutation p.Q691K 0.49 tolerated(0.28) benign(0.314) TCGA-CV-6941-01 1 192548327 192548327 A C RGS1 Missense_Mutation p.T169P 0.62 tolerated(0.11) probably_damaging(0.969) TCGA-CV-6941-01 1 201938617 201938617 C T TIMM17A Missense_Mutation p.P151S 0.56 deleterious(0.01) benign(0.014) TCGA-CV-6941-01 1 23385657 23385657 A G KDM1A Silent p.Q388Q 0.18 TCGA-CV-6941-01 1 248129000 248129000 G T OR2AK2 Missense_Mutation p.G123C 0.06 tolerated(0.11) probably_damaging(0.977) TCGA-CV-6941-01 1 248685814 248685814 C A OR2G6 Silent p.I289I 0.14 TCGA-CV-6941-01 1 25153564 25153564 A C CLIC4 Missense_Mutation p.K124N 0.20 deleterious(0.01) benign(0.179) TCGA-CV-6941-01 1 50666796 50666796 G T ELAVL4 Silent p.L366L 0.33 TCGA-CV-6941-01 1 6253065 6253065 A G RPL22 Missense_Mutation p.L56P 0.12 deleterious(0) probably_damaging(0.994) TCGA-CV-6941-01 1 68947901 68947901 A C DEPDC1 Silent p.A530A 0.23 TCGA-CV-6941-01 1 75688097 75688097 A C SLC44A5 Missense_Mutation p.F345C 0.49 deleterious(0) probably_damaging(0.994) TCGA-CV-6941-01 1 899313 899313 G A KLHL17 Missense_Mutation p.D457N 0.22 tolerated(0.19) probably_damaging(0.996) TCGA-CV-6941-01 20 1551507 1551507 C T SIRPB1 Missense_Mutation p.S343N 0.20 tolerated(0.97) benign(0) TCGA-CV-6941-01 20 2315841 2315841 G A TGM3 Silent p.A574A 0.42 TCGA-CV-6941-01 20 30407983 30407983 C A MYLK2 Missense_Mutation p.P36H 0.32 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-CV-6941-01 20 62669728 62669728 T A ZNF512B Intron 0.17 TCGA-CV-6941-01 20 7962875 7962875 T A TMX4 3'UTR 0.21 TCGA-CV-6941-01 20 8709798 8709798 T C PLCB1 Missense_Mutation p.V622A 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6941-01 21 44521539 44521539 T C U2AF1 Intron 0.55 TCGA-CV-6941-01 22 35481763 35481764 - G ISX 3'UTR 0.09 TCGA-CV-6941-01 22 37538536 37538536 A T IL2RB Missense_Mutation p.C74S 0.13 deleterious(0.01) probably_damaging(0.969) TCGA-CV-6941-01 22 37693602 37693602 C T CYTH4 Intron 0.21 TCGA-CV-6941-01 22 39832515 39832515 G A TAB1 3'Flank 0.08 TCGA-CV-6941-01 22 39832645 39832645 G A TAB1 3'Flank 0.21 TCGA-CV-6941-01 22 39917879 39917879 G A ATF4 Missense_Mutation p.D110N 0.18 deleterious(0.04) possibly_damaging(0.632) TCGA-CV-6941-01 2 110373348 110373349 CT - SOWAHC Frame_Shift_Del p.S429Tfs*17 0.33 TCGA-CV-6941-01 2 128712714 128712714 C T SAP130 Silent p.A782A 0.15 TCGA-CV-6941-01 2 141294272 141294272 T A LRP1B Missense_Mutation p.N2507I 0.37 possibly_damaging(0.904) TCGA-CV-6941-01 2 16085953 16085953 T A MYCN Missense_Mutation p.S377T 0.50 tolerated(0.33) benign(0.362) TCGA-CV-6941-01 2 169690790 169690790 T C NOSTRIN Silent p.L153L 0.23 TCGA-CV-6941-01 2 179612845 179612845 C A TTN Intron 0.38 TCGA-CV-6941-01 2 18766048 18766048 T C NT5C1B Missense_Mutation p.N212S 0.30 tolerated_low_confidence(0.11) benign(0.002) TCGA-CV-6941-01 2 218674659 218674659 C T TNS1 Silent p.Q1616Q 0.53 TCGA-CV-6941-01 2 47382368 47382368 G A C2orf61 Missense_Mutation p.T8I 0.40 tolerated_low_confidence(1) benign(0) TCGA-CV-6941-01 2 63283436 63283436 G T OTX1 Silent p.R350R 0.14 TCGA-CV-6941-01 2 89986923 89986923 T C IGKV2D-29 Silent p.P68P 0.46 TCGA-CV-6941-01 3 133099858 133099858 C T TMEM108 Missense_Mutation p.P435S 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-6941-01 3 14552798 14552798 C T GRIP2 RNA 0.52 TCGA-CV-6941-01 3 151100493 151100493 G A MED12L Missense_Mutation p.R1512Q 0.52 tolerated(0.11) probably_damaging(0.944) TCGA-CV-6941-01 3 183368452 183368452 G A KLHL24 Missense_Mutation p.R103Q 0.29 tolerated(0.32) benign(0.095) TCGA-CV-6941-01 3 183521945 183521945 G C YEATS2 Missense_Mutation p.E1251D 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-CV-6941-01 3 49213226 49213226 G - KLHDC8B Frame_Shift_Del p.V354Sfs*36 0.39 TCGA-CV-6941-01 3 49329942 49329942 C G USP4 Splice_Site p.X658_splice 0.62 TCGA-CV-6941-01 3 53804530 53804530 G A CACNA1D Missense_Mutation p.R1352K 0.51 tolerated(0.32) probably_damaging(0.99) TCGA-CV-6941-01 3 56657144 56657144 C G FAM208A 3'UTR 0.49 TCGA-CV-6941-01 3 88189761 88189761 G C ZNF654 Missense_Mutation p.S434T 0.54 deleterious(0.03) benign(0.075) TCGA-CV-6941-01 3 97888271 97888271 C A OR5H15 Missense_Mutation p.A243D 0.25 deleterious(0.01) possibly_damaging(0.892) TCGA-CV-6941-01 4 107956552 107956552 C G DKK2 Missense_Mutation p.S66T 0.28 tolerated(0.62) benign(0.049) TCGA-CV-6941-01 4 109805340 109805340 C T COL25A1 Silent p.G338G 0.16 TCGA-CV-6941-01 4 134072702 134072702 C T PCDH10 Silent p.D469D 0.31 TCGA-CV-6941-01 4 1801019 1801019 G A FGFR3 Missense_Mutation p.V50I 0.20 tolerated(0.23) benign(0.011) TCGA-CV-6941-01 4 184931970 184931970 G A STOX2 Missense_Mutation p.G660E 0.22 deleterious_low_confidence(0) benign(0.408) TCGA-CV-6941-01 4 83970432 83970433 - A COPS4 Frame_Shift_Ins p.I92Dfs*4 0.29 TCGA-CV-6941-01 4 94031921 94031921 C T GRID2 Silent p.F184F 0.23 TCGA-CV-6941-01 4 949582 949582 C T TMEM175 Missense_Mutation p.S249L 0.23 tolerated(0.14) benign(0.075) TCGA-CV-6941-01 5 135383029 135383029 C T TGFBI Missense_Mutation p.L231F 0.50 deleterious(0) probably_damaging(0.998) TCGA-CV-6941-01 5 13769209 13769209 C T DNAH5 Missense_Mutation p.E3253K 0.27 possibly_damaging(0.621) TCGA-CV-6941-01 5 167552005 167552005 C T TENM2 Missense_Mutation p.T720M 0.33 deleterious(0.01) benign(0.393) TCGA-CV-6941-01 5 176673717 176673717 C T NSD1 Nonsense_Mutation p.R1473* 0.57 TCGA-CV-6941-01 5 34945007 34945007 A G DNAJC21 Missense_Mutation p.E340G 0.46 deleterious(0) probably_damaging(0.986) TCGA-CV-6941-01 5 37480011 37480011 G A WDR70 Silent p.K254K 0.14 TCGA-CV-6941-01 5 41054880 41054880 G T MROH2B Missense_Mutation p.L366I 0.33 tolerated(0.39) benign(0.037) TCGA-CV-6941-01 5 5237176 5237176 G A ADAMTS16 Silent p.E706E 0.37 TCGA-CV-6941-01 6 13639954 13639954 T C RANBP9 Missense_Mutation p.T456A 0.25 tolerated(0.18) probably_damaging(0.992) TCGA-CV-6941-01 6 152527463 152527463 C G SYNE1 Missense_Mutation p.S7620T 0.17 benign(0.263) TCGA-CV-6941-01 6 31855962 31855962 G A EHMT2 Missense_Mutation p.P534L 0.20 deleterious(0) probably_damaging(0.998) TCGA-CV-6941-01 6 33423997 33423997 G A ZBTB9 Missense_Mutation p.G374R 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-CV-6941-01 6 34499414 34499414 G A PACSIN1 Missense_Mutation p.E359K 0.21 tolerated(0.08) possibly_damaging(0.526) TCGA-CV-6941-01 7 103018069 103018069 C A SLC26A5 Missense_Mutation p.V655F 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-6941-01 7 138738294 138738294 G A ZC3HAV1 Silent p.L784L 0.31 TCGA-CV-6941-01 7 20683197 20683197 C T ABCB5 Missense_Mutation p.T207I 0.41 deleterious(0) probably_damaging(0.945) TCGA-CV-6941-01 7 21940799 21940799 C T DNAH11 Missense_Mutation p.T4500I 0.33 possibly_damaging(0.791) TCGA-CV-6941-01 7 23221624 23221624 G A NUPL2 5'UTR 0.20 TCGA-CV-6941-01 7 44739836 44739836 C A OGDH Silent p.R843R 0.19 TCGA-CV-6941-01 7 6045547 6045547 G A PMS2 Silent p.L47L 0.17 TCGA-CV-6941-01 7 64166756 64166756 C T ZNF107 Missense_Mutation p.S25F 0.49 deleterious(0.05) benign(0.127) TCGA-CV-6941-01 7 8153539 8153539 C G ICA1 3'UTR 0.22 TCGA-CV-6941-01 7 87459335 87459343 CTCCATCCT - RUNDC3B Nonstop_Mutation p.TPS*471R 0.21 TCGA-CV-6941-01 7 92015905 92015905 G A ANKIB1 Missense_Mutation p.R567H 0.55 deleterious(0) probably_damaging(0.969) TCGA-CV-6941-01 8 13356766 13356766 G A DLC1 Missense_Mutation p.T272I 0.09 deleterious_low_confidence(0.03) benign(0.008) TCGA-CV-6941-01 8 143784867 143784867 G A LY6K 3'UTR 0.41 TCGA-CV-6941-01 8 146033063 146033063 C T ZNF517 Silent p.V254V 0.37 TCGA-CV-6941-01 8 146157090 146157090 G A ZNF16 Silent p.S361S 0.32 TCGA-CV-6941-01 8 195353 195353 G A ZNF596 Missense_Mutation p.S169N 0.38 tolerated(0.05) benign(0) TCGA-CV-6941-01 8 68130079 68130079 T C ARFGEF1 Silent p.L1517L 0.42 TCGA-CV-6941-01 9 103092287 103092287 G C TEX10 Missense_Mutation p.S472C 0.53 tolerated(0.21) benign(0.005) TCGA-CV-6941-01 9 123476100 123476100 G T MEGF9 Missense_Mutation p.S179R 0.15 tolerated(0.15) benign(0) TCGA-CV-6941-01 9 125148893 125148893 C G PTGS1 Missense_Mutation p.S393C 0.64 deleterious(0) possibly_damaging(0.863) TCGA-CV-6941-01 9 136277920 136277920 C T REXO4 Missense_Mutation p.V232M 0.26 deleterious(0.01) probably_damaging(0.915) TCGA-CV-6941-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.50 TCGA-CV-6941-01 9 72723128 72723128 C T MAMDC2 Silent p.G50G 0.13 TCGA-CV-6941-01 9 84199033 84199033 A T TLE1 3'UTR 0.56 TCGA-CV-6941-01 9 84607724 84607724 T C SPATA31D1 Missense_Mutation p.V780A 0.41 tolerated(0.48) benign(0.001) TCGA-CV-6941-01 9 96051365 96051365 G A WNK2 Silent p.P1480P 1.00 TCGA-CV-6941-01 X 100497390 100497390 C G DRP2 Missense_Mutation p.S302C 0.67 tolerated(0.22) benign(0.109) TCGA-CV-6941-01 X 147733537 147733537 G T AFF2 Missense_Mutation p.R22L 0.70 deleterious(0) probably_damaging(0.992) TCGA-CV-6941-01 X 24006507 24006507 C T KLHL15 Missense_Mutation p.S449N 0.58 tolerated(0.29) benign(0.081) TCGA-CV-6941-01 X 73042039 73042039 C T XIST RNA 0.62 TCGA-CV-6941-01 X 74334622 74334622 T A ABCB7 Missense_Mutation p.K72N 0.67 tolerated(0.16) benign(0.002) TCGA-CV-6942-01 10 103563684 103563684 G C MGEA5 Missense_Mutation p.H282D 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-6942-01 10 104678683 104678683 G C CNNM2 Missense_Mutation p.R149P 0.24 tolerated(0.36) benign(0.003) TCGA-CV-6942-01 10 12110991 12110991 C A DHTKD1 5'UTR 0.29 TCGA-CV-6942-01 10 43015890 43015890 G A ZNF37BP RNA 0.13 TCGA-CV-6942-01 10 45799190 45799190 C T OR13A1 Silent p.V227V 0.15 TCGA-CV-6942-01 10 51748341 51748341 C G AGAP6 5'Flank 0.25 TCGA-CV-6942-01 10 96541716 96541716 C G CYP2C19 Missense_Mutation p.R261G 0.32 deleterious(0) possibly_damaging(0.894) TCGA-CV-6942-01 11 116728595 116728595 C T SIK3 Missense_Mutation p.E1090K 0.18 deleterious_low_confidence(0.01) benign(0.297) TCGA-CV-6942-01 11 1271681 1271681 C G MUC5B Missense_Mutation p.A4524G 0.32 unknown(0) TCGA-CV-6942-01 11 130343462 130343462 C T ADAMTS15 Missense_Mutation p.R867W 0.17 deleterious(0.04) possibly_damaging(0.832) TCGA-CV-6942-01 11 32615458 32615458 G C EIF3M Missense_Mutation p.E194Q 0.29 tolerated(0.12) benign(0.18) TCGA-CV-6942-01 11 34668200 34668200 C G EHF Silent p.L126L 0.69 TCGA-CV-6942-01 11 49214404 49214404 C A FOLH1 Nonsense_Mutation p.E152* 0.08 TCGA-CV-6942-01 11 55541619 55541619 C T OR5D13 Missense_Mutation p.R236C 0.11 tolerated(0.07) benign(0.082) TCGA-CV-6942-01 11 62484600 62484600 C G HNRNPUL2 Missense_Mutation p.E614D 0.07 tolerated(0.1) benign(0.002) TCGA-CV-6942-01 11 65349905 65349905 G C EHBP1L1 Missense_Mutation p.E588Q 0.15 deleterious(0.02) benign(0.424) TCGA-CV-6942-01 11 66332076 66332076 C A CTSF Missense_Mutation p.S425I 0.77 deleterious(0.01) probably_damaging(0.969) TCGA-CV-6942-01 11 73717291 73717291 C T UCP3 Missense_Mutation p.R87H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-6942-01 11 82880841 82880841 A - PCF11 Frame_Shift_Del p.H1155Lfs*56 0.17 TCGA-CV-6942-01 12 113758155 113758155 G A SLC8B1 Silent p.V225V 0.22 TCGA-CV-6942-01 12 120941685 120941685 C T COQ5 Missense_Mutation p.E296K 0.22 tolerated(0.38) possibly_damaging(0.597) TCGA-CV-6942-01 12 129694177 129694177 G A TMEM132D Missense_Mutation p.T444M 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6942-01 12 21377664 21377664 C G SLCO1B1 Missense_Mutation p.L586V 0.24 tolerated(0.2) probably_damaging(0.976) TCGA-CV-6942-01 12 23998941 23998941 C G SOX5 Missense_Mutation p.E153Q 0.16 deleterious(0.05) probably_damaging(0.993) TCGA-CV-6942-01 12 27850258 27850258 C G REP15 3'UTR 0.39 TCGA-CV-6942-01 12 48596119 48596119 C T OR10AD1 3'UTR 0.24 TCGA-CV-6942-01 12 57500498 57500498 C G STAT6 Missense_Mutation p.Q152H 0.30 tolerated(0.22) benign(0.004) TCGA-CV-6942-01 12 57864291 57864291 C T GLI1 Missense_Mutation p.R590W 0.17 deleterious(0) probably_damaging(0.998) TCGA-CV-6942-01 12 57868406 57868406 C T ARHGAP9 Intron 0.23 TCGA-CV-6942-01 12 58158990 58158990 G C CYP27B1 Missense_Mutation p.I198M 0.13 deleterious(0) probably_damaging(0.967) TCGA-CV-6942-01 12 7047686 7047686 C G ATN1 Missense_Mutation p.L854V 0.18 possibly_damaging(0.736) TCGA-CV-6942-01 12 7818459 7818459 C T APOBEC1 Missense_Mutation p.E4K 0.16 tolerated(0.47) benign(0.001) TCGA-CV-6942-01 12 89745576 89745576 C T DUSP6 Missense_Mutation p.E81K 0.12 tolerated(0.35) benign(0.233) TCGA-CV-6942-01 13 19753481 19753481 C T TUBA3C Missense_Mutation p.D76N 0.09 deleterious_low_confidence(0.01) benign(0.018) TCGA-CV-6942-01 13 42335296 42335296 G C VWA8 Silent p.L798L 0.21 TCGA-CV-6942-01 13 49852553 49852553 C A CDADC1 Missense_Mutation p.S373Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-6942-01 14 21167749 21167749 C T RNASE4 Silent p.F73F 0.19 TCGA-CV-6942-01 14 24650974 24650974 G T IPO4 Silent p.I961I 0.14 TCGA-CV-6942-01 14 24868439 24868439 C T NYNRIN 5'UTR 0.20 TCGA-CV-6942-01 14 50655405 50655405 A C SOS2 Missense_Mutation p.M175R 0.21 deleterious(0) probably_damaging(0.982) TCGA-CV-6942-01 14 51233551 51233551 C G NIN Missense_Mutation p.E498Q 0.37 tolerated(0.14) probably_damaging(0.999) TCGA-CV-6942-01 14 70518746 70518746 G T SLC8A3 Silent p.P664P 0.30 TCGA-CV-6942-01 14 73989500 73989500 G A HEATR4 Silent p.F119F 0.16 TCGA-CV-6942-01 15 102294646 102294646 G C DNM1P47 RNA 0.21 TCGA-CV-6942-01 15 30008860 30008860 G A TJP1 Missense_Mutation p.P1386L 0.21 tolerated_low_confidence(0.11) benign(0.002) TCGA-CV-6942-01 15 31358388 31358388 G A TRPM1 Silent p.S244S 0.17 TCGA-CV-6942-01 15 35189848 35189848 C G AQR Missense_Mutation p.D768H 0.36 tolerated(0.05) benign(0.401) TCGA-CV-6942-01 15 41030186 41030186 G A RMDN3 Missense_Mutation p.L368F 0.18 deleterious(0) probably_damaging(0.997) TCGA-CV-6942-01 15 41350928 41350928 G A INO80 Nonsense_Mutation p.Q632* 0.22 TCGA-CV-6942-01 15 42375422 42375422 C G PLA2G4D Missense_Mutation p.E216Q 0.19 tolerated(0.45) benign(0.017) TCGA-CV-6942-01 15 54305735 54305735 A T UNC13C Missense_Mutation p.K212M 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-6942-01 15 63481934 63481934 C T RAB8B Silent p.F37F 0.21 TCGA-CV-6942-01 15 63571357 63571357 C G APH1B Intron 0.08 TCGA-CV-6942-01 15 65916745 65916745 G A SLC24A1 Silent p.E109E 0.16 TCGA-CV-6942-01 15 65918077 65918077 C T SLC24A1 Silent p.L553L 0.19 TCGA-CV-6942-01 15 77473623 77473623 C G PEAK1 Missense_Mutation p.E216Q 0.22 deleterious(0) possibly_damaging(0.827) TCGA-CV-6942-01 15 90616485 90616485 C A ZNF710 Missense_Mutation p.F547L 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-CV-6942-01 15 91522476 91522476 C T PRC1 Missense_Mutation p.R340Q 0.11 tolerated(0.26) benign(0.081) TCGA-CV-6942-01 16 1614075 1614075 C T IFT140 Missense_Mutation p.E664K 0.18 deleterious(0) probably_damaging(0.987) TCGA-CV-6942-01 16 28925721 28925721 C T RABEP2 Missense_Mutation p.G244S 0.21 tolerated(0.59) benign(0.008) TCGA-CV-6942-01 16 3656656 3656656 C G SLX4 Missense_Mutation p.L193F 0.21 tolerated(0.06) benign(0.104) TCGA-CV-6942-01 16 67272351 67272351 C T FHOD1 Splice_Site p.X125_splice 0.15 TCGA-CV-6942-01 17 16527194 16527194 C T ZNF624 Missense_Mutation p.E336K 0.22 deleterious(0.03) benign(0.44) TCGA-CV-6942-01 17 17061836 17061836 G A MPRIP Silent p.P522P 0.17 TCGA-CV-6942-01 17 1746094 1746094 C G RPA1 Intron 0.18 TCGA-CV-6942-01 17 19748690 19748690 G A ULK2 Missense_Mutation p.A157V 0.25 deleterious(0.02) probably_damaging(0.98) TCGA-CV-6942-01 17 34072759 34072759 C T GAS2L2 Missense_Mutation p.R586Q 0.16 tolerated(0.46) benign(0.005) TCGA-CV-6942-01 17 3550808 3550808 C T CTNS Silent p.L44L 0.20 TCGA-CV-6942-01 17 40557194 40557194 G A PTRF Silent p.R228R 0.19 TCGA-CV-6942-01 17 40849569 40849569 C G CNTNAP1 Intron 0.18 TCGA-CV-6942-01 17 40940726 40940726 G C WNK4 Missense_Mutation p.E690Q 0.25 deleterious(0) unknown(0) TCGA-CV-6942-01 17 4436304 4436304 C T SPNS2 Missense_Mutation p.S323L 0.19 deleterious(0) possibly_damaging(0.669) TCGA-CV-6942-01 17 44408455 44408455 G C LRRC37A Missense_Mutation p.R1271T 0.23 deleterious(0.02) benign(0.034) TCGA-CV-6942-01 17 46685180 46685180 C T HOXB7 3'UTR 0.17 TCGA-CV-6942-01 17 4996049 4996049 G T ZFP3 Missense_Mutation p.G417V 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 17 61910724 61910724 G C SMARCD2 Silent p.L458L 0.26 TCGA-CV-6942-01 17 6905118 6905118 C A ALOX12 Missense_Mutation p.H383Q 0.18 deleterious(0) probably_damaging(0.931) TCGA-CV-6942-01 17 73564865 73564865 G C LLGL2 Missense_Mutation p.D423H 0.12 tolerated(0.06) benign(0.072) TCGA-CV-6942-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.18 TCGA-CV-6942-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.24 TCGA-CV-6942-01 17 8790443 8790443 G C PIK3R5 Silent p.L625L 0.17 TCGA-CV-6942-01 18 11752499 11752499 G A GNAL Intron 0.20 TCGA-CV-6942-01 18 40853923 40853923 G C SYT4 Silent p.L157L 0.13 TCGA-CV-6942-01 18 56897646 56897646 C G GRP Silent p.L131L 0.19 TCGA-CV-6942-01 18 9255172 9255172 C T ANKRD12 Missense_Mutation p.S636L 0.21 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CV-6942-01 19 10254621 10254621 G A DNMT1 Silent p.P979P 0.15 TCGA-CV-6942-01 19 11213447 11213447 G C LDLR Missense_Mutation p.D100H 0.13 deleterious(0) probably_damaging(0.988) TCGA-CV-6942-01 19 12776262 12776262 G A MAN2B1 Missense_Mutation p.R114C 0.21 deleterious(0) probably_damaging(0.936) TCGA-CV-6942-01 19 15061151 15061151 G T SLC1A6 Silent p.A517A 0.24 TCGA-CV-6942-01 19 21240040 21240040 G C ZNF430 Missense_Mutation p.R309T 0.22 tolerated(0.24) benign(0.255) TCGA-CV-6942-01 19 21300910 21300910 C G ZNF714 Nonsense_Mutation p.Y480* 0.23 TCGA-CV-6942-01 19 22363886 22363886 G C ZNF676 Missense_Mutation p.I211M 0.16 tolerated(0.24) benign(0.34) TCGA-CV-6942-01 19 30935952 30935952 G A ZNF536 Missense_Mutation p.V495M 0.22 tolerated(0.09) possibly_damaging(0.803) TCGA-CV-6942-01 19 43428917 43428917 G C PSG7 3'UTR 0.22 TCGA-CV-6942-01 19 46215504 46215504 T C FBXO46 Missense_Mutation p.D417G 0.29 tolerated(0.37) benign(0.007) TCGA-CV-6942-01 19 47910822 47910822 C G MEIS3 Missense_Mutation p.R287T 0.36 tolerated_low_confidence(0.63) benign(0.003) TCGA-CV-6942-01 19 49207290 49207290 C G FUT2 3'UTR 0.16 TCGA-CV-6942-01 19 50862816 50862816 C T NAPSA Missense_Mutation p.E294K 0.19 tolerated(0.15) probably_damaging(0.91) TCGA-CV-6942-01 19 54318203 54318203 G A NLRP12 Missense_Mutation p.S110L 0.23 tolerated(0.72) benign(0.004) TCGA-CV-6942-01 19 56701579 56701579 G T ZSCAN5B Missense_Mutation p.Q369K 0.26 tolerated(0.34) benign(0.007) TCGA-CV-6942-01 19 57746747 57746747 C T AURKC Nonsense_Mutation p.R298* 0.22 TCGA-CV-6942-01 1 12336511 12336511 C T VPS13D Silent p.L956L 0.14 TCGA-CV-6942-01 1 145560245 145560245 G A ANKRD35 Missense_Mutation p.R244Q 0.22 tolerated(0.07) possibly_damaging(0.602) TCGA-CV-6942-01 1 1463193 1463193 A GC ATAD3A Frame_Shift_Ins p.R534Afs*5 0.15 TCGA-CV-6942-01 1 149785051 149785051 C G HIST2H3D Silent p.L62L 0.25 TCGA-CV-6942-01 1 153615540 153615540 G C CHTOP Intron 0.29 TCGA-CV-6942-01 1 154184769 154184769 C G C1orf43 Intron 0.18 TCGA-CV-6942-01 1 156821804 156821804 G A INSRR Missense_Mutation p.R273C 0.24 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 1 157666155 157666155 G T FCRL3 Intron 0.27 TCGA-CV-6942-01 1 160001446 160001446 G A PIGM Silent p.A28A 0.25 TCGA-CV-6942-01 1 16262721 16262721 C T SPEN Missense_Mutation p.S3329F 0.10 possibly_damaging(0.498) TCGA-CV-6942-01 1 165664528 165664528 C A ALDH9A1 Missense_Mutation p.E96D 0.32 deleterious(0.02) benign(0.172) TCGA-CV-6942-01 1 166891884 166891884 C T ILDR2 Missense_Mutation p.R386H 0.17 tolerated(0.07) benign(0.041) TCGA-CV-6942-01 1 181727186 181727186 C T CACNA1E Missense_Mutation p.P1478L 0.19 deleterious(0) possibly_damaging(0.726) TCGA-CV-6942-01 1 190067931 190067941 TCTGTCCGTTT - BRINP3 Frame_Shift_Del p.K503Tfs*12 0.16 TCGA-CV-6942-01 1 197890773 197890773 C A LHX9 Silent p.I239I 0.16 TCGA-CV-6942-01 1 203696681 203696681 G A ATP2B4 Silent p.L1097L 0.27 TCGA-CV-6942-01 1 213147383 213147383 C T VASH2 Silent p.P278P 0.08 TCGA-CV-6942-01 1 220870088 220870088 G T C1orf115 3'UTR 0.25 TCGA-CV-6942-01 1 231155686 231155686 C G FAM89A Missense_Mutation p.D160H 0.29 tolerated(0.08) benign(0.003) TCGA-CV-6942-01 1 39826464 39826464 G C MACF1 Splice_Site p.X2020_splice 0.18 TCGA-CV-6942-01 1 42744162 42744162 C G FOXJ3 Missense_Mutation p.D76H 0.15 deleterious(0) probably_damaging(0.997) TCGA-CV-6942-01 1 44685131 44685131 C G DMAP1 Silent p.V320V 0.24 TCGA-CV-6942-01 1 47264771 47264771 C T CYP4B1 Silent p.L6L 0.15 TCGA-CV-6942-01 1 52729530 52729530 C G ZFYVE9 Nonsense_Mutation p.S755* 0.16 TCGA-CV-6942-01 1 62905655 62905655 C G USP1 Missense_Mutation p.F39L 0.17 deleterious(0.01) possibly_damaging(0.823) TCGA-CV-6942-01 1 78207408 78207408 C T USP33 Missense_Mutation p.G23E 0.11 tolerated_low_confidence(0.21) benign(0.005) TCGA-CV-6942-01 1 91727882 91727882 G C HFM1 Missense_Mutation p.S1385C 0.19 tolerated_low_confidence(0.06) possibly_damaging(0.625) TCGA-CV-6942-01 1 94526123 94526123 C T ABCA4 Missense_Mutation p.M710I 0.20 tolerated(1) benign(0.016) TCGA-CV-6942-01 1 94652141 94652141 C T ARHGAP29 Missense_Mutation p.R565Q 0.26 tolerated(0.06) benign(0.116) TCGA-CV-6942-01 1 95710026 95710026 C A RWDD3 Silent p.L115L 0.23 TCGA-CV-6942-01 1 97564048 97564048 G T DPYD Silent p.I921I 0.24 TCGA-CV-6942-01 1 98039322 98039322 G A DPYD Missense_Mutation p.P445S 0.24 tolerated(0.32) benign(0.002) TCGA-CV-6942-01 20 44675031 44675031 G T SLC12A5 Silent p.L604L 0.17 TCGA-CV-6942-01 20 50701128 50701128 C T ZFP64 Missense_Mutation p.E636K 0.26 deleterious_low_confidence(0.03) benign(0.032) TCGA-CV-6942-01 20 55750064 55750064 C G BMP7 Splice_Site p.X320_splice 0.36 TCGA-CV-6942-01 20 58349449 58349449 G T PHACTR3 Nonsense_Mutation p.E360* 0.23 TCGA-CV-6942-01 20 8717816 8717816 G A PLCB1 Missense_Mutation p.E729K 0.10 deleterious(0) probably_damaging(0.957) TCGA-CV-6942-01 21 22710789 22710789 G A NCAM2 Missense_Mutation p.E327K 0.30 deleterious(0.02) benign(0.039) TCGA-CV-6942-01 21 34037326 34037326 C T SYNJ1 Missense_Mutation p.R773Q 0.14 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 21 42824567 42824567 G C MX1 Missense_Mutation p.R510T 0.19 deleterious(0.03) benign(0.315) TCGA-CV-6942-01 21 43161791 43161791 C T RIPK4 Missense_Mutation p.R521Q 0.17 deleterious(0.02) possibly_damaging(0.852) TCGA-CV-6942-01 21 43531075 43531075 C T UMODL1 Silent p.L581L 0.26 TCGA-CV-6942-01 21 44299516 44299516 C A WDR4 Splice_Site p.X30_splice 0.28 TCGA-CV-6942-01 21 47549243 47549243 C T COL6A2 Intron 0.16 TCGA-CV-6942-01 21 47665030 47665030 C T MCM3AP Missense_Mutation p.E1577K 0.21 deleterious(0) probably_damaging(0.986) TCGA-CV-6942-01 22 17288845 17288845 G C XKR3 Nonsense_Mutation p.S40* 0.19 TCGA-CV-6942-01 22 20825634 20825634 C G KLHL22 Intron 0.23 TCGA-CV-6942-01 22 30639779 30639779 C A LIF Missense_Mutation p.S157I 0.29 deleterious(0.04) benign(0.117) TCGA-CV-6942-01 22 38690154 38690154 G A CSNK1E Silent p.L393L 0.13 TCGA-CV-6942-01 22 46657509 46657509 C G PKDREJ Missense_Mutation p.A571P 0.11 tolerated(0.27) benign(0.055) TCGA-CV-6942-01 22 46780555 46780555 G T CELSR1 Missense_Mutation p.F2256L 0.15 tolerated(0.66) benign(0.006) TCGA-CV-6942-01 2 102984411 102984411 C T IL18R1 Missense_Mutation p.S62L 0.24 tolerated(0.25) benign(0.015) TCGA-CV-6942-01 2 11284117 11284117 G A C2orf50 Silent p.T123T 0.14 TCGA-CV-6942-01 2 129025882 129025882 G A HS6ST1 Nonsense_Mutation p.Q364* 0.28 TCGA-CV-6942-01 2 135093845 135093845 G A MGAT5 Missense_Mutation p.D211N 0.32 tolerated(0.5) benign(0.175) TCGA-CV-6942-01 2 149793866 149793866 C G KIF5C Missense_Mutation p.I120M 0.20 deleterious(0) probably_damaging(0.973) TCGA-CV-6942-01 2 15629092 15629092 G A NBAS Missense_Mutation p.H337Y 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6942-01 2 178095623 178095623 C T NFE2L2 Missense_Mutation p.D570N 0.15 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 2 179397871 179397871 C G TTN Missense_Mutation p.E34491Q 0.23 TCGA-CV-6942-01 2 179450071 179450071 G A TTN Missense_Mutation p.P21467L 0.20 TCGA-CV-6942-01 2 197767387 197767387 T A PGAP1 Silent p.G243G 0.21 TCGA-CV-6942-01 2 198363463 198363463 C T HSPD1 Missense_Mutation p.R37Q 0.16 tolerated(0.05) benign(0.038) TCGA-CV-6942-01 2 198570406 198570406 G C MARS2 Missense_Mutation p.D93H 0.24 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 2 198570421 198570421 A C MARS2 Missense_Mutation p.K98Q 0.20 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 2 20101573 20101573 C T TTC32 Missense_Mutation p.A15T 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-6942-01 2 21230369 21230369 T C APOB Missense_Mutation p.D3124G 0.18 benign(0.081) TCGA-CV-6942-01 2 218999995 218999995 G C CXCR2 Missense_Mutation p.Q157H 0.29 tolerated(0.13) probably_damaging(0.997) TCGA-CV-6942-01 2 219000052 219000052 G A CXCR2 Silent p.L176L 0.37 TCGA-CV-6942-01 2 230653558 230653558 C T TRIP12 Missense_Mutation p.M1523I 0.26 tolerated(0.07) possibly_damaging(0.885) TCGA-CV-6942-01 2 234186223 234186223 G A ATG16L1 Missense_Mutation p.D322N 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-6942-01 2 234527112 234527112 G A UGT1A8 Silent p.L253L 0.17 TCGA-CV-6942-01 2 242065973 242065973 T C PASK Missense_Mutation p.E786G 0.24 tolerated(0.66) benign(0.002) TCGA-CV-6942-01 2 26688665 26688665 C A OTOF Silent p.T1558T 0.17 TCGA-CV-6942-01 2 28050554 28050554 C A RBKS Missense_Mutation p.L225F 0.22 tolerated(0.09) benign(0.258) TCGA-CV-6942-01 2 47604194 47604194 C A EPCAM Missense_Mutation p.P178Q 0.17 tolerated(0.12) benign(0.008) TCGA-CV-6942-01 2 53927562 53927562 G A ASB3 Missense_Mutation p.R397C 0.09 tolerated(0.08) benign(0.013) TCGA-CV-6942-01 2 60687704 60687704 C G BCL11A Missense_Mutation p.Q781H 0.23 deleterious(0) probably_damaging(0.998) TCGA-CV-6942-01 2 61483552 61483552 G C USP34 Missense_Mutation p.S2063C 0.16 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 2 71043722 71043722 A G CLEC4F Missense_Mutation p.V264A 0.26 tolerated(0.36) benign(0.093) TCGA-CV-6942-01 2 89326865 89326865 T G IGKV3-11 Missense_Mutation p.S50R 0.24 deleterious(0.04) benign(0.075) TCGA-CV-6942-01 2 89986900 89986900 T A IGKV2D-29 Missense_Mutation p.Y61N 0.15 deleterious(0) benign(0.327) TCGA-CV-6942-01 2 89986918 89986918 C A IGKV2D-29 Missense_Mutation p.Q67K 0.17 tolerated(0.07) benign(0.109) TCGA-CV-6942-01 2 99695250 99695250 G C TSGA10 Missense_Mutation p.Q252E 0.10 deleterious(0.03) benign(0.115) TCGA-CV-6942-01 3 113152421 113152421 C G WDR52 Missense_Mutation p.E31Q 0.21 tolerated_low_confidence(0.36) benign(0.02) TCGA-CV-6942-01 3 120413005 120413005 C G RABL3 Missense_Mutation p.D201H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-6942-01 3 12209896 12209896 C T SYN2 RNA 0.29 TCGA-CV-6942-01 3 122514336 122514336 C G DIRC2 Missense_Mutation p.I99M 0.16 deleterious(0) possibly_damaging(0.704) TCGA-CV-6942-01 3 132387716 132387716 T A UBA5 Missense_Mutation p.F118I 0.23 deleterious(0) probably_damaging(0.917) TCGA-CV-6942-01 3 135720623 135720623 C A PPP2R3A Missense_Mutation p.P95T 0.16 tolerated_low_confidence(0.12) benign(0.172) TCGA-CV-6942-01 3 141292835 141292835 C G RASA2 Nonsense_Mutation p.S470* 0.16 TCGA-CV-6942-01 3 150176430 150176430 C G TSC22D2 3'UTR 0.19 TCGA-CV-6942-01 3 179066596 179066596 C T MFN1 Intron 0.21 TCGA-CV-6942-01 3 184039136 184039136 C T EIF4G1 Missense_Mutation p.S262L 0.18 tolerated(0.1) benign(0.067) TCGA-CV-6942-01 3 32612233 32612233 G A DYNC1LI1 Silent p.F10F 0.18 TCGA-CV-6942-01 3 38991702 38991702 C T SCN11A Missense_Mutation p.R51Q 0.08 tolerated(0.14) benign(0.045) TCGA-CV-6942-01 3 39227860 39227860 C G XIRP1 Missense_Mutation p.G1026A 0.20 deleterious(0.02) benign(0.354) TCGA-CV-6942-01 3 41266590 41266590 A G CTNNB1 Silent p.S129S 0.23 TCGA-CV-6942-01 3 42229593 42229593 C T TRAK1 Silent p.T179T 0.14 TCGA-CV-6942-01 3 45874556 45874556 C T LZTFL1 Missense_Mutation p.E148K 0.10 tolerated(0.38) benign(0.018) TCGA-CV-6942-01 3 52014456 52014456 C T ABHD14A Missense_Mutation p.R149W 0.32 deleterious(0) probably_damaging(0.998) TCGA-CV-6942-01 3 78696802 78696802 G C ROBO1 Missense_Mutation p.P939R 0.20 tolerated(0.05) possibly_damaging(0.473) TCGA-CV-6942-01 4 11400946 11400946 G A HS3ST1 Silent p.I228I 0.17 TCGA-CV-6942-01 4 141543569 141543569 T A TBC1D9 Missense_Mutation p.Q1194L 0.16 tolerated_low_confidence(0.29) benign(0) TCGA-CV-6942-01 4 151271210 151271210 C G LRBA Silent p.V2443V 0.19 TCGA-CV-6942-01 4 156764841 156764841 G T ASIC5 Missense_Mutation p.Q285K 0.23 tolerated(0.09) benign(0.1) TCGA-CV-6942-01 4 185678149 185678149 C T ACSL1 3'UTR 0.28 TCGA-CV-6942-01 4 186545417 186545417 T C SORBS2 Missense_Mutation p.D485G 0.22 deleterious(0) probably_damaging(0.998) TCGA-CV-6942-01 4 187541705 187541721 AAAGGCTCATTGATTGG - FAT1 Frame_Shift_Del p.P2007Vfs*12 0.19 TCGA-CV-6942-01 4 42416643 42416643 C T ATP8A1 Splice_Site p.X1133_splice 0.21 TCGA-CV-6942-01 4 52860807 52860807 G C LRRC66 Missense_Mutation p.S794C 0.11 deleterious(0) probably_damaging(0.99) TCGA-CV-6942-01 4 85701392 85701392 C A WDFY3 Missense_Mutation p.A1412S 0.32 tolerated(0.64) benign(0.338) TCGA-CV-6942-01 4 89688701 89688701 C T FAM13A Intron 0.21 TCGA-CV-6942-01 5 134305780 134305780 G C CATSPER3 Missense_Mutation p.E84Q 0.15 tolerated(0.12) benign(0.23) TCGA-CV-6942-01 5 139825539 139825539 C G ANKHD1 Missense_Mutation p.L376V 0.25 unknown(0) TCGA-CV-6942-01 5 140502282 140502282 C A PCDHB4 Silent p.I234I 0.17 TCGA-CV-6942-01 5 141243981 141243981 C T PCDH1 Missense_Mutation p.G639R 0.20 tolerated(0.06) possibly_damaging(0.617) TCGA-CV-6942-01 5 167419991 167419991 C T TENM2 Silent p.F330F 0.28 TCGA-CV-6942-01 5 176721768 176721768 G C NSD1 Missense_Mutation p.E2467Q 0.18 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-CV-6942-01 5 54637510 54637510 T - SKIV2L2 Frame_Shift_Del p.L232* 0.21 TCGA-CV-6942-01 5 56152466 56152466 C T MAP3K1 Silent p.H174H 0.12 TCGA-CV-6942-01 5 66409957 66409957 G C MAST4 Missense_Mutation p.E501Q 0.26 probably_damaging(0.96) TCGA-CV-6942-01 5 74063033 74063033 C G GFM2 5'UTR 0.20 TCGA-CV-6942-01 5 74077279 74077279 C A FAM169A 3'UTR 0.20 TCGA-CV-6942-01 5 74077286 74077286 C G FAM169A Nonstop_Mutation p.*671Sext*13 0.20 TCGA-CV-6942-01 5 74722220 74722220 A T COL4A3BP Silent p.S272S 0.07 TCGA-CV-6942-01 6 135787271 135787271 C A AHI1 Nonsense_Mutation p.E144* 0.25 TCGA-CV-6942-01 6 152470722 152470722 C T SYNE1 Missense_Mutation p.E8178K 0.23 possibly_damaging(0.863) TCGA-CV-6942-01 6 15508627 15508627 C G JARID2 Missense_Mutation p.R930G 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-CV-6942-01 6 24596166 24596166 C G KIAA0319 Missense_Mutation p.E246Q 0.17 tolerated(0.22) benign(0.019) TCGA-CV-6942-01 6 26252092 26252092 G C HIST1H2BH Missense_Mutation p.E72Q 0.13 deleterious_low_confidence(0.02) benign(0.334) TCGA-CV-6942-01 6 28554275 28554275 G A SCAND3 Missense_Mutation p.R74W 0.18 deleterious_low_confidence(0) benign(0.333) TCGA-CV-6942-01 6 29274829 29274829 C T OR14J1 Silent p.Y121Y 0.24 TCGA-CV-6942-01 6 31934521 31934521 C T SKIV2L Silent p.L746L 0.15 TCGA-CV-6942-01 6 31934894 31934894 G C SKIV2L Silent p.L818L 0.17 TCGA-CV-6942-01 6 35980126 35980126 C T SLC26A8 Missense_Mutation p.R71Q 0.16 tolerated(0.06) possibly_damaging(0.656) TCGA-CV-6942-01 6 47678616 47678616 C G GPR115 Silent p.L98L 0.17 TCGA-CV-6942-01 6 57075104 57075104 C A RAB23 Missense_Mutation p.M25I 0.21 deleterious(0.01) probably_damaging(1) TCGA-CV-6942-01 6 74063030 74063030 G A DPPA5 3'UTR 0.17 TCGA-CV-6942-01 7 117149168 117149168 T A CFTR Missense_Mutation p.M82K 0.17 deleterious(0) benign(0.424) TCGA-CV-6942-01 7 121943869 121943869 G A FEZF1 Missense_Mutation p.A208V 0.23 tolerated(0.09) benign(0.041) TCGA-CV-6942-01 7 123097516 123097516 G T IQUB Silent p.S704S 0.17 TCGA-CV-6942-01 7 144380027 144380027 C G TPK1 Missense_Mutation p.D54H 0.22 tolerated(0.36) benign(0.04) TCGA-CV-6942-01 7 152012253 152012253 G C KMT2C Nonsense_Mutation p.S187* 0.20 TCGA-CV-6942-01 7 24905839 24905839 G A OSBPL3 Silent p.V133V 0.26 TCGA-CV-6942-01 7 48068470 48068470 G A SUN3 Silent p.S22S 0.22 TCGA-CV-6942-01 7 72849297 72849297 C G FZD9 Silent p.L320L 0.18 TCGA-CV-6942-01 7 72849453 72849453 C T FZD9 Silent p.V372V 0.33 TCGA-CV-6942-01 7 82763968 82763968 T C PCLO Silent p.Q966Q 0.17 TCGA-CV-6942-01 7 82785588 82785588 C G PCLO Missense_Mutation p.Q123H 0.16 unknown(0) TCGA-CV-6942-01 7 94057185 94057185 G C COL1A2 Missense_Mutation p.E1172Q 0.12 unknown(0) TCGA-CV-6942-01 7 96746985 96746985 G A ACN9 5'UTR 0.20 TCGA-CV-6942-01 7 99757817 99757817 G A GAL3ST4 Missense_Mutation p.R399C 0.25 deleterious(0) probably_damaging(0.961) TCGA-CV-6942-01 8 121473491 121473491 G C MTBP Missense_Mutation p.E325Q 0.25 deleterious(0.01) probably_damaging(0.932) TCGA-CV-6942-01 8 143310873 143310873 A G TSNARE1 Missense_Mutation p.I505T 0.40 tolerated(0.08) benign(0.023) TCGA-CV-6942-01 8 52252221 52252221 G C PXDNL Missense_Mutation p.A1370G 0.16 tolerated(0.42) benign(0.006) TCGA-CV-6942-01 8 62366697 62366697 C T CLVS1 Intron 0.33 TCGA-CV-6942-01 8 87230021 87230021 G A SLC7A13 Missense_Mutation p.S286L 0.26 deleterious(0) possibly_damaging(0.833) TCGA-CV-6942-01 8 95172204 95172204 T A CDH17 Nonsense_Mutation p.K516* 0.09 TCGA-CV-6942-01 9 112963671 112963671 C T C9orf152 Missense_Mutation p.E93K 0.18 tolerated(0.07) benign(0.096) TCGA-CV-6942-01 9 117187294 117187294 C T DFNB31 Missense_Mutation p.D393N 0.24 tolerated(0.11) benign(0.004) TCGA-CV-6942-01 9 131254985 131254985 G A ODF2 Missense_Mutation p.M551I 0.15 tolerated(0.32) benign(0.023) TCGA-CV-6942-01 9 131254993 131254993 G A ODF2 Missense_Mutation p.R554K 0.16 tolerated(0.12) benign(0.259) TCGA-CV-6942-01 9 133967144 133967144 C A LAMC3 Missense_Mutation p.S1566R 0.28 deleterious(0) possibly_damaging(0.807) TCGA-CV-6942-01 9 133967145 133967145 C A LAMC3 Missense_Mutation p.L1567M 0.27 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 9 135413023 135413023 G T C9orf171 Missense_Mutation p.R223L 0.18 deleterious(0) probably_damaging(0.963) TCGA-CV-6942-01 9 138379081 138379081 G C PPP1R26 Missense_Mutation p.E909Q 0.17 tolerated(0.27) possibly_damaging(0.859) TCGA-CV-6942-01 9 139409118 139409118 C - NOTCH1 Frame_Shift_Del p.G684Afs*88 0.28 TCGA-CV-6942-01 9 21974696 21974696 T C CDKN2A Missense_Mutation p.Y44C 0.22 deleterious(0.01) benign(0.038) TCGA-CV-6942-01 9 32630264 32630264 C T TAF1L Missense_Mutation p.D1772N 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.69) TCGA-CV-6942-01 9 35853523 35853523 C T TMEM8B Missense_Mutation p.R369W 0.25 deleterious(0.01) probably_damaging(1) TCGA-CV-6942-01 9 8518241 8518241 T G PTPRD Missense_Mutation p.S384R 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-CV-6942-01 9 90296352 90296352 C T DAPK1 Nonsense_Mutation p.R679* 0.19 TCGA-CV-6942-01 9 91653163 91653163 G T SHC3 Silent p.P467P 0.20 TCGA-CV-6942-01 9 97329705 97329705 G C FBP2 Intron 0.25 TCGA-CV-6942-01 X 108926454 108926454 A T ACSL4 Missense_Mutation p.S88T 0.21 tolerated(0.5) benign(0) TCGA-CV-6942-01 X 11197434 11197434 T C ARHGAP6 Missense_Mutation p.I490V 0.23 tolerated(0.1) possibly_damaging(0.759) TCGA-CV-6942-01 X 125299536 125299536 G A DCAF12L2 Silent p.D124D 0.10 TCGA-CV-6942-01 X 134493848 134493848 C G ZNF449 Missense_Mutation p.F197L 0.26 tolerated(0.53) benign(0.004) TCGA-CV-6942-01 X 138871517 138871517 C T ATP11C Missense_Mutation p.G449E 0.21 tolerated(0.1) possibly_damaging(0.752) TCGA-CV-6942-01 X 141290746 141290746 C G MAGEC2 Missense_Mutation p.R343T 0.17 deleterious(0.01) possibly_damaging(0.49) TCGA-CV-6942-01 X 142717244 142717244 C T SLITRK4 Missense_Mutation p.E561K 0.21 tolerated(0.54) benign(0.078) TCGA-CV-6942-01 X 153178184 153178184 G C ARHGAP4 Silent p.L544L 0.23 TCGA-CV-6942-01 X 153178994 153178994 C T ARHGAP4 Missense_Mutation p.G439R 0.27 tolerated(0.34) possibly_damaging(0.784) TCGA-CV-6942-01 X 32366610 32366610 G T DMD Missense_Mutation p.N1787K 0.18 possibly_damaging(0.607) TCGA-CV-6942-01 X 3238066 3238066 C A MXRA5 Missense_Mutation p.W1887L 0.22 deleterious(0) probably_damaging(0.954) TCGA-CV-6942-01 X 37586996 37586996 C T XK Silent p.L206L 0.20 TCGA-CV-6942-01 X 48687838 48687838 A T ERAS Missense_Mutation p.H102L 0.20 tolerated(0.07) benign(0.124) TCGA-CV-6942-01 X 54337720 54337720 C G WNK3 Missense_Mutation p.R181P 0.30 deleterious(0) probably_damaging(1) TCGA-CV-6942-01 X 55757890 55757890 C T RRAGB Silent p.S157S 0.13 TCGA-CV-6942-01 X 69504561 69504561 C T RAB41 3'UTR 0.35 TCGA-CV-6942-01 X 70824232 70824232 G A ACRC Missense_Mutation p.D369N 0.20 unknown(0) TCGA-CV-6942-01 X 75649321 75649321 C T MAGEE1 Missense_Mutation p.P333L 0.21 tolerated_low_confidence(0.45) benign(0.001) TCGA-CV-6943-01 10 26789871 26789871 A T APBB1IP Missense_Mutation p.H95L 0.08 tolerated(0.35) benign(0.002) TCGA-CV-6943-01 10 61014170 61014170 G A FAM13C Missense_Mutation p.L424F 0.06 tolerated(0.08) benign(0.104) TCGA-CV-6943-01 10 90034742 90034742 C T RNLS Missense_Mutation p.M308I 0.11 tolerated_low_confidence(0.38) unknown(0) TCGA-CV-6943-01 10 96028705 96028705 G A PLCE1 Missense_Mutation p.R1434Q 0.12 deleterious(0) probably_damaging(1) TCGA-CV-6943-01 11 103062954 103062954 C G DYNC2H1 Missense_Mutation p.Q2557E 0.14 benign(0.001) TCGA-CV-6943-01 11 3697545 3697545 A G NUP98 Silent p.D1749D 0.11 TCGA-CV-6943-01 11 57583793 57583793 C T CTNND1 3'UTR 0.07 TCGA-CV-6943-01 11 61131848 61131848 G C TMEM138 5'UTR 0.07 TCGA-CV-6943-01 11 65482118 65482118 C T KAT5 Silent p.S281S 0.15 TCGA-CV-6943-01 12 102067320 102067320 G A MYBPC1 Missense_Mutation p.R903K 0.19 deleterious(0.04) probably_damaging(0.995) TCGA-CV-6943-01 12 110345367 110345367 G A TCHP Missense_Mutation p.E188K 0.08 deleterious(0.01) probably_damaging(1) TCGA-CV-6943-01 12 124172678 124172678 G C TCTN2 Missense_Mutation p.G282A 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-6943-01 12 19282753 19282753 T G PLEKHA5 Missense_Mutation p.L7R 0.12 tolerated(0.6) possibly_damaging(0.462) TCGA-CV-6943-01 12 48143717 48143717 G A RAPGEF3 Silent p.T271T 0.07 TCGA-CV-6943-01 12 64502717 64502717 G C SRGAP1 Missense_Mutation p.D607H 0.11 deleterious(0) possibly_damaging(0.722) TCGA-CV-6943-01 13 28578200 28578200 C T FLT3 Missense_Mutation p.E991K 0.17 tolerated_low_confidence(0.17) benign(0.003) TCGA-CV-6943-01 13 50586806 50586806 G C TRIM13 Missense_Mutation p.E247Q 0.06 deleterious(0.02) probably_damaging(0.951) TCGA-CV-6943-01 14 20296393 20296393 C T OR4N2 Silent p.F262F 0.14 TCGA-CV-6943-01 14 77901690 77901690 C A VIPAS39 Missense_Mutation p.R320L 0.08 deleterious(0.01) possibly_damaging(0.647) TCGA-CV-6943-01 15 23811808 23811808 C G MKRN3 Missense_Mutation p.H293Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-6943-01 16 15826519 15826519 C T MYH11 Missense_Mutation p.E1192K 0.08 benign(0.172) TCGA-CV-6943-01 16 30721369 30721369 C G SRCAP Missense_Mutation p.Q352E 0.12 unknown(0) TCGA-CV-6943-01 16 4861236 4861236 G T GLYR1 Missense_Mutation p.R508S 0.10 deleterious(0.01) benign(0.198) TCGA-CV-6943-01 16 90097737 90097737 G C GAS8 Missense_Mutation p.E41Q 0.05 deleterious(0) benign(0.424) TCGA-CV-6943-01 17 26962166 26962166 C A KIAA0100 Silent p.R813R 0.09 TCGA-CV-6943-01 17 33680115 33680115 T A SLFN11 Nonsense_Mutation p.R656* 0.10 TCGA-CV-6943-01 17 36002253 36002253 C T DDX52 Missense_Mutation p.V58M 0.13 tolerated(0.11) benign(0.018) TCGA-CV-6943-01 17 43005428 43005428 C G KIF18B Missense_Mutation p.E748Q 0.08 tolerated(0.55) benign(0.015) TCGA-CV-6943-01 17 46673729 46673729 C T HOXB6 3'UTR 0.11 TCGA-CV-6943-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.18 deleterious(0) probably_damaging(1) TCGA-CV-6943-01 17 76128900 76128900 G T TMC8 Silent p.P160P 0.06 TCGA-CV-6943-01 19 12997871 12997871 G A KLF1 Silent p.L28L 0.10 TCGA-CV-6943-01 19 54695773 54695773 G A TSEN34 Missense_Mutation p.E149K 0.18 tolerated(0.13) benign(0.002) TCGA-CV-6943-01 1 10357284 10357284 C A KIF1B Missense_Mutation p.L653I 0.11 deleterious(0.04) probably_damaging(0.986) TCGA-CV-6943-01 1 152058381 152058381 C G TCHHL1 Missense_Mutation p.D593H 0.06 deleterious(0) probably_damaging(0.914) TCGA-CV-6943-01 1 197021931 197021931 C G F13B Missense_Mutation p.R463T 0.10 tolerated(0.1) benign(0.206) TCGA-CV-6943-01 1 203652440 203652440 G A ATP2B4 Missense_Mutation p.R36H 0.05 tolerated(0.05) benign(0.157) TCGA-CV-6943-01 1 8928111 8928111 C G ENO1 Silent p.L82L 0.07 TCGA-CV-6943-01 20 3147473 3147473 C T LZTS3 Missense_Mutation p.G113S 0.09 tolerated(0.1) probably_damaging(0.986) TCGA-CV-6943-01 22 41513521 41513521 G T EP300 Missense_Mutation p.G142V 0.13 unknown(0) TCGA-CV-6943-01 22 46656522 46656522 T C PKDREJ Missense_Mutation p.N900D 0.12 tolerated(0.63) benign(0.017) TCGA-CV-6943-01 2 108488225 108488225 G A RGPD4 Silent p.R1255R 0.14 TCGA-CV-6943-01 2 108488226 108488226 G A RGPD4 Missense_Mutation p.E1256K 0.14 tolerated(0.18) benign(0.074) TCGA-CV-6943-01 2 133541833 133541833 C T NCKAP5 Missense_Mutation p.E851K 0.05 deleterious(0.03) benign(0.056) TCGA-CV-6943-01 2 202137479 202137481 ACT - CASP8 In_Frame_Del p.Y237del 0.21 TCGA-CV-6943-01 2 27306123 27306123 C G EMILIN1 Missense_Mutation p.L562V 0.12 benign(0.002) TCGA-CV-6943-01 2 39250272 39250272 C T SOS1 Missense_Mutation p.E433K 0.06 deleterious(0.02) benign(0.146) TCGA-CV-6943-01 3 150264627 150264627 G A SERP1 5'UTR 0.08 TCGA-CV-6943-01 3 180685878 180685878 C G FXR1 Missense_Mutation p.S413C 0.13 deleterious(0.04) probably_damaging(0.99) TCGA-CV-6943-01 3 30691947 30691947 C G TGFBR2 Nonsense_Mutation p.S175* 0.06 TCGA-CV-6943-01 3 51430468 51430468 G A RBM15B Silent p.L546L 0.09 TCGA-CV-6943-01 4 126241929 126241929 C G FAT4 Missense_Mutation p.L1455V 0.04 possibly_damaging(0.68) TCGA-CV-6943-01 4 187539417 187539417 G A FAT1 Nonsense_Mutation p.Q2775* 0.08 TCGA-CV-6943-01 6 29912175 29912175 G T HLA-A Splice_Site p.X299_splice 0.16 TCGA-CV-6943-01 6 41773790 41773790 G A USP49 Missense_Mutation p.S311L 0.09 tolerated(0.13) benign(0.004) TCGA-CV-6943-01 6 84872909 84872909 C T KIAA1009 Missense_Mutation p.M822I 0.09 tolerated(0.11) benign(0.106) TCGA-CV-6943-01 8 103358503 103358503 C T UBR5 Missense_Mutation p.D233N 0.06 tolerated(0.11) probably_damaging(0.93) TCGA-CV-6943-01 8 104709390 104709390 C T RIMS2 Nonsense_Mutation p.Q85* 0.13 TCGA-CV-6943-01 8 2020522 2020522 C G MYOM2 Silent p.L297L 0.09 TCGA-CV-6943-01 9 140150358 140150358 G C NELFB Splice_Site p.X35_splice 0.09 TCGA-CV-6943-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.23 TCGA-CV-6943-01 X 100524182 100524182 C T TAF7L Silent p.%3D 0.17 TCGA-CV-6943-01 X 13762639 13762639 G T OFD1 Splice_Site p.X173_splice 0.21 TCGA-CV-6943-01 X 150911102 150911102 C T CNGA2 Nonsense_Mutation p.R193* 0.26 TCGA-CV-6945-01 10 131973264 131973264 C T GLRX3 Missense_Mutation p.R290W 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-6945-01 10 134014379 134014379 C T DPYSL4 Silent p.C334C 0.27 TCGA-CV-6945-01 10 15760779 15760779 G T ITGA8 Missense_Mutation p.P110Q 0.30 tolerated(0.44) probably_damaging(1) TCGA-CV-6945-01 10 16918894 16918894 A T CUBN Splice_Site p.X3036_splice 0.16 TCGA-CV-6945-01 10 47754726 47754726 C G ANXA8L2 Silent p.T111T 0.18 TCGA-CV-6945-01 10 5948284 5948284 C T FBXO18 Missense_Mutation p.P199S 0.12 tolerated(0.25) benign(0.002) TCGA-CV-6945-01 10 64159517 64159517 A G ZNF365 Intron 0.20 TCGA-CV-6945-01 10 96162460 96162460 G A TBC1D12 Silent p.R30R 0.38 TCGA-CV-6945-01 11 134253871 134253871 C T B3GAT1 Silent p.T108T 0.56 TCGA-CV-6945-01 11 59190241 59190241 G A OR5A2 Silent p.F62F 0.23 TCGA-CV-6945-01 11 59211053 59211053 A G OR5A1 Missense_Mutation p.I138V 0.10 tolerated(0.25) benign(0.001) TCGA-CV-6945-01 11 66192686 66192686 G A NPAS4 Silent p.G775G 0.29 TCGA-CV-6945-01 12 100955674 100955674 G T NR1H4 Nonsense_Mutation p.E374* 0.17 TCGA-CV-6945-01 12 105600878 105600878 C T APPL2 Missense_Mutation p.M200I 0.15 tolerated(1) benign(0) TCGA-CV-6945-01 12 109849746 109849746 G C MYO1H Silent p.L470L 0.27 TCGA-CV-6945-01 12 113872019 113872019 C A SDSL Silent p.P145P 0.18 TCGA-CV-6945-01 12 123482024 123482024 C T PITPNM2 Silent p.G440G 0.23 TCGA-CV-6945-01 12 133266864 133266864 A T PXMP2 Silent p.A46A 0.19 TCGA-CV-6945-01 12 21069131 21069131 G C SLCO1B3 Missense_Mutation p.D687H 0.36 deleterious(0.02) possibly_damaging(0.73) TCGA-CV-6945-01 12 21958120 21958120 C A ABCC9 Intron 0.30 TCGA-CV-6945-01 12 51853842 51853842 G T SLC4A8 Silent p.L321L 0.16 TCGA-CV-6945-01 12 52709747 52709747 T A KRT83 Missense_Mutation p.M398L 0.17 deleterious(0.04) benign(0.047) TCGA-CV-6945-01 12 57532268 57532268 T C LRP1 Missense_Mutation p.F32L 0.19 probably_damaging(0.995) TCGA-CV-6945-01 12 6970679 6970679 G A USP5 Missense_Mutation p.R524Q 0.42 deleterious(0) probably_damaging(0.929) TCGA-CV-6945-01 12 7046365 7046365 C G ATN1 Silent p.S645S 0.20 TCGA-CV-6945-01 12 7973851 7973851 G A SLC2A14 Missense_Mutation p.A335V 0.26 tolerated(0.86) benign(0.042) TCGA-CV-6945-01 13 102375271 102375271 G C FGF14 Silent p.V223V 0.53 TCGA-CV-6945-01 13 25743972 25743972 G T AMER2 Missense_Mutation p.L596M 0.51 tolerated(0.21) probably_damaging(1) TCGA-CV-6945-01 13 32907432 32907432 C T BRCA2 Missense_Mutation p.P606L 0.13 tolerated(0.07) benign(0.003) TCGA-CV-6945-01 13 37269148 37269148 G T SERTM1 5'UTR 0.49 TCGA-CV-6945-01 13 76393647 76393647 C T LMO7 Missense_Mutation p.T495M 0.30 deleterious(0) possibly_damaging(0.841) TCGA-CV-6945-01 13 78183252 78183252 G T SCEL Missense_Mutation p.G426V 0.37 deleterious(0.01) probably_damaging(0.964) TCGA-CV-6945-01 14 21957421 21957421 T C TOX4 Silent p.P223P 0.45 TCGA-CV-6945-01 14 24631429 24631450 CCCGGAGTGTGCTGGGATGATA - IRF9 Frame_Shift_Del p.P26Qfs*240 0.24 TCGA-CV-6945-01 14 63246619 63246619 T A KCNH5 Missense_Mutation p.I616F 0.31 tolerated(0.31) benign(0.287) TCGA-CV-6945-01 14 64936395 64936395 G C AKAP5 Nonstop_Mutation p.*428Sext*27 0.14 TCGA-CV-6945-01 14 75264441 75264441 G A YLPM1 Missense_Mutation p.R814Q 0.22 probably_damaging(0.975) TCGA-CV-6945-01 15 22472949 22472949 C A IGHV4OR15-8 Missense_Mutation p.A108S 0.06 deleterious(0.03) benign(0.262) TCGA-CV-6945-01 15 23261779 23261779 G A GOLGA8I Silent p.P297P 0.21 TCGA-CV-6945-01 15 28491924 28491924 C T HERC2 Missense_Mutation p.A1119T 0.23 possibly_damaging(0.557) TCGA-CV-6945-01 15 42470746 42470746 A C VPS39 Missense_Mutation p.I247M 0.13 deleterious(0.01) benign(0.35) TCGA-CV-6945-01 15 43927557 43927557 C G CATSPER2 Splice_Site p.X393_splice 0.07 TCGA-CV-6945-01 15 75047386 75047386 G T CYP1A2 Missense_Mutation p.R503L 0.16 deleterious(0) benign(0.102) TCGA-CV-6945-01 16 23700835 23700835 C T PLK1 Silent p.F482F 0.33 TCGA-CV-6945-01 16 53675283 53675283 C T RPGRIP1L Missense_Mutation p.E930K 0.28 tolerated(0.64) benign(0.002) TCGA-CV-6945-01 16 70164400 70164400 G T PDPR Missense_Mutation p.D228Y 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-CV-6945-01 16 71319208 71319208 T A CMTR2 Missense_Mutation p.N206Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-CV-6945-01 16 76496003 76496003 G A CNTNAP4 Splice_Site p.X422_splice 0.24 TCGA-CV-6945-01 16 848479 848480 CA - GNG13 3'UTR 0.50 TCGA-CV-6945-01 17 17078662 17078662 G A MPRIP Missense_Mutation p.G882E 0.21 tolerated(1) benign(0.038) TCGA-CV-6945-01 17 18155350 18155350 C A FLII Silent p.A403A 0.32 TCGA-CV-6945-01 17 34192401 34192401 C A C17orf66 Splice_Site p.X47_splice 0.39 TCGA-CV-6945-01 17 39658642 39658642 C T KRT13 Missense_Mutation p.E410K 0.24 deleterious(0) probably_damaging(0.978) TCGA-CV-6945-01 17 42230139 42230145 GCGCAAG - C17orf53 Frame_Shift_Del 0.19 TCGA-CV-6945-01 17 51900500 51900500 C A KIF2B Missense_Mutation p.R36S 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6945-01 17 57288460 57288460 A T SMG8 Missense_Mutation p.M350L 0.26 tolerated(0.62) benign(0.014) TCGA-CV-6945-01 17 72741290 72741290 C T RAB37 Intron 0.43 TCGA-CV-6945-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.60 deleterious(0) probably_damaging(1) TCGA-CV-6945-01 17 78059875 78059875 C A CCDC40 Missense_Mutation p.A770E 0.10 deleterious(0) benign(0.031) TCGA-CV-6945-01 17 79244715 79244715 C T SLC38A10 Intron 0.31 TCGA-CV-6945-01 18 13100301 13100301 C T CEP192 Intron 0.53 TCGA-CV-6945-01 19 30193700 30193700 C T C19orf12 Silent p.E126E 0.31 TCGA-CV-6945-01 19 36046418 36046418 C T ATP4A Missense_Mutation p.R694H 0.25 tolerated(0.09) possibly_damaging(0.744) TCGA-CV-6945-01 19 38860883 38860883 C A CATSPERG Silent p.A1066A 0.41 TCGA-CV-6945-01 19 3964890 3964890 A - DAPK3 Frame_Shift_Del p.V56* 0.23 TCGA-CV-6945-01 19 42364842 42364842 C G RPS19 Intron 0.22 TCGA-CV-6945-01 19 47503647 47503647 G A ARHGAP35 Nonsense_Mutation p.W1401* 0.13 TCGA-CV-6945-01 19 54194151 54194151 C A MIR520A RNA 0.17 TCGA-CV-6945-01 19 55143396 55143396 C G LILRB1 Missense_Mutation p.I123M 0.14 deleterious(0.01) benign(0) TCGA-CV-6945-01 19 55493571 55493571 C T NLRP2 Missense_Mutation p.R169W 0.36 tolerated(0.19) benign(0.001) TCGA-CV-6945-01 19 56370340 56370340 A G NLRP4 Missense_Mutation p.I527M 0.17 tolerated(0.06) benign(0.23) TCGA-CV-6945-01 19 58596681 58596681 G A ZSCAN18 Missense_Mutation p.P358S 0.42 tolerated(0.76) possibly_damaging(0.857) TCGA-CV-6945-01 19 59073763 59073763 G A MZF1 Silent p.C627C 0.36 TCGA-CV-6945-01 1 104115830 104115830 G C AMY2B Missense_Mutation p.G154A 0.10 tolerated(0.21) benign(0.002) TCGA-CV-6945-01 1 147381094 147381094 G A GJA8 Missense_Mutation p.A338T 0.44 tolerated(0.12) benign(0.024) TCGA-CV-6945-01 1 156518471 156518471 A T IQGAP3 Nonsense_Mutation p.L632* 0.17 TCGA-CV-6945-01 1 159024730 159024730 G T IFI16 3'UTR 0.28 TCGA-CV-6945-01 1 159842919 159842919 C T CCDC19 Silent p.E464E 0.31 TCGA-CV-6945-01 1 162343660 162343660 C T C1orf111 3'UTR 0.27 TCGA-CV-6945-01 1 177226226 177226226 T C BRINP2 Intron 0.26 TCGA-CV-6945-01 1 202850116 202850116 G A RABIF Missense_Mutation p.S121F 0.17 deleterious(0.01) possibly_damaging(0.793) TCGA-CV-6945-01 1 21940122 21940122 T A RAP1GAP Missense_Mutation p.K222M 0.20 deleterious(0) probably_damaging(0.985) TCGA-CV-6945-01 1 248366497 248366497 C G OR2M3 Missense_Mutation p.S43C 0.27 deleterious(0.03) possibly_damaging(0.592) TCGA-CV-6945-01 1 52305985 52305985 T C NRD1 Silent p.E181E 0.29 TCGA-CV-6945-01 1 91182551 91182551 C A BARHL2 Missense_Mutation p.V68F 0.09 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-CV-6945-01 1 91404033 91404033 G A ZNF644 Missense_Mutation p.L960F 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-CV-6945-01 20 33855127 33855127 G A MMP24 Missense_Mutation p.G367R 0.26 tolerated(0.51) possibly_damaging(0.851) TCGA-CV-6945-01 21 15599442 15599442 G C RBM11 Missense_Mutation p.G225A 0.15 tolerated_low_confidence(0.59) probably_damaging(0.998) TCGA-CV-6945-01 21 15599531 15599531 G A RBM11 Missense_Mutation p.D255N 0.14 deleterious(0) probably_damaging(0.989) TCGA-CV-6945-01 21 15599599 15599599 G A RBM11 Silent p.K277K 0.16 TCGA-CV-6945-01 21 31744390 31744390 G T KRTAP13-2 Missense_Mutation p.L48M 0.25 deleterious(0.02) possibly_damaging(0.786) TCGA-CV-6945-01 22 46860111 46860111 G A CELSR1 Missense_Mutation p.L1226F 0.23 tolerated(0.4) probably_damaging(0.969) TCGA-CV-6945-01 22 50279257 50279257 C T ZBED4 Silent p.Y649Y 0.24 TCGA-CV-6945-01 22 51137137 51137137 C T SHANK3 Silent p.G522G 0.24 TCGA-CV-6945-01 2 103324959 103324959 G A SLC9A2 3'UTR 0.39 TCGA-CV-6945-01 2 114210755 114210755 G T CBWD2 Missense_Mutation p.G157V 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-CV-6945-01 2 133543010 133543010 C A NCKAP5 Silent p.G458G 0.15 TCGA-CV-6945-01 2 159530275 159530275 T G PKP4 Splice_Site p.X1003_splice 0.35 TCGA-CV-6945-01 2 162087916 162087916 A G TANK Missense_Mutation p.I319V 0.23 tolerated(0.45) benign(0.006) TCGA-CV-6945-01 2 179428334 179428334 G T TTN Silent p.R27509R 0.25 TCGA-CV-6945-01 2 179612977 179612977 G A TTN Intron 0.18 TCGA-CV-6945-01 2 190530996 190530996 G T ASNSD1 Missense_Mutation p.Q46H 0.26 tolerated(0.39) benign(0.002) TCGA-CV-6945-01 2 19553023 19553023 G A OSR1 Missense_Mutation p.R182C 0.36 deleterious(0) probably_damaging(1) TCGA-CV-6945-01 2 26682979 26682979 A G OTOF Silent p.L1970L 0.25 TCGA-CV-6945-01 2 80835424 80835424 G T CTNNA2 Missense_Mutation p.G804V 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-6945-01 2 90109045 90109045 G C IGKV6D-41 Missense_Mutation p.A104P 0.12 deleterious(0) probably_damaging(0.985) TCGA-CV-6945-01 3 108211974 108211974 C A MYH15 Silent p.V274V 0.14 TCGA-CV-6945-01 3 121304883 121304883 C A ARGFX Missense_Mutation p.N128K 0.11 deleterious(0.02) probably_damaging(0.945) TCGA-CV-6945-01 3 121643791 121643791 G T SLC15A2 Splice_Site p.X346_splice 0.14 TCGA-CV-6945-01 3 16646816 16646816 C T DAZL 5'Flank 0.39 TCGA-CV-6945-01 3 170219002 170219002 C G SLC7A14 Missense_Mutation p.G146A 0.17 deleterious(0.01) probably_damaging(1) TCGA-CV-6945-01 3 178948136 178948136 G A PIK3CA Missense_Mutation p.E970K 0.36 tolerated(0.51) benign(0.05) TCGA-CV-6945-01 3 184040413 184040413 C T EIF4G1 Missense_Mutation p.P571S 0.12 tolerated(0.13) benign(0.013) TCGA-CV-6945-01 3 35732493 35732493 A T ARPP21 Nonsense_Mutation p.R228* 0.11 TCGA-CV-6945-01 3 36780196 36780196 G A DCLK3 5'UTR 0.43 TCGA-CV-6945-01 3 39306963 39306963 C G CX3CR1 Silent p.T378T 0.35 TCGA-CV-6945-01 3 48670527 48670528 - A SLC26A6 Intron 0.29 TCGA-CV-6945-01 3 52012073 52012073 G T ABHD14A Missense_Mutation p.V86L 0.30 deleterious(0.04) benign(0.164) TCGA-CV-6945-01 3 98001793 98001793 G T OR5H2 Missense_Mutation p.G21V 0.19 deleterious(0) probably_damaging(0.997) TCGA-CV-6945-01 4 108535299 108535299 T C PAPSS1 3'UTR 0.24 TCGA-CV-6945-01 4 13602037 13602037 T G BOD1L1 Missense_Mutation p.K2163Q 0.26 benign(0.007) TCGA-CV-6945-01 4 178911715 178911715 G A LINC01098 3'UTR 0.15 TCGA-CV-6945-01 4 1941327 1941327 A G WHSC1 Intron 0.26 TCGA-CV-6945-01 4 3134446 3134446 A T HTT Silent p.T798T 0.29 TCGA-CV-6945-01 4 367208 367208 A G ZNF141 Missense_Mutation p.K328E 0.30 tolerated(0.26) benign(0.01) TCGA-CV-6945-01 4 3768967 3768967 C T ADRA2C Silent p.L212L 0.30 TCGA-CV-6945-01 4 40752855 40752856 - T NSUN7 Frame_Shift_Ins p.M49Ifs*25 0.19 TCGA-CV-6945-01 4 41747863 41747863 G C PHOX2B Missense_Mutation p.N302K 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-6945-01 4 42403471 42403471 C T SHISA3 3'UTR 0.31 TCGA-CV-6945-01 4 44177041 44177041 T A KCTD8 Silent p.A396A 0.15 TCGA-CV-6945-01 4 48550722 48550724 GAA - FRYL In_Frame_Del p.L1624del 0.23 TCGA-CV-6945-01 4 79284715 79284715 G T FRAS1 Missense_Mutation p.G824V 0.44 possibly_damaging(0.862) TCGA-CV-6945-01 4 87705662 87705662 A T PTPN13 Missense_Mutation p.K2028N 0.12 tolerated(0.48) benign(0.005) TCGA-CV-6945-01 5 13708445 13708445 C T DNAH5 Splice_Site p.X4376_splice 0.33 TCGA-CV-6945-01 5 140166108 140166108 A T PCDHA1 Missense_Mutation p.N78I 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CV-6945-01 5 140222763 140222763 C A PCDHA8 Silent p.R619R 0.30 TCGA-CV-6945-01 5 140475707 140475707 G C PCDHB2 Missense_Mutation p.D445H 0.28 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CV-6945-01 5 172517447 172517447 G A CREBRF Missense_Mutation p.E89K 0.44 deleterious_low_confidence(0.05) probably_damaging(0.994) TCGA-CV-6945-01 5 176794768 176794768 G T RGS14 Silent p.G227G 0.24 TCGA-CV-6945-01 5 35876595 35876595 A G IL7R 3'UTR 0.17 TCGA-CV-6945-01 5 5486871 5486871 A T KIAA0947 Silent p.P2186P 0.23 TCGA-CV-6945-01 5 54968452 54968452 G A SLC38A9 Missense_Mutation p.S62F 0.20 tolerated(0.08) possibly_damaging(0.529) TCGA-CV-6945-01 5 60188219 60188219 C G ERCC8 Intron 0.22 TCGA-CV-6945-01 5 7831828 7831828 G C C5orf49 3'UTR 0.29 TCGA-CV-6945-01 6 144416291 144416291 T A SF3B5 3'UTR 0.56 TCGA-CV-6945-01 6 169648982 169648983 CG - THBS2 Frame_Shift_Del p.G47Afs*14 0.32 TCGA-CV-6945-01 6 27440105 27440105 G A ZNF184 5'UTR 0.48 TCGA-CV-6945-01 6 38820534 38820534 G A DNAH8 Missense_Mutation p.R1627H 0.19 possibly_damaging(0.849) TCGA-CV-6945-01 7 102614071 102614071 C A FBXL13 Intron 0.23 TCGA-CV-6945-01 7 107674717 107674717 C G LAMB4 Missense_Mutation p.R1585P 0.25 tolerated(0.12) benign(0.008) TCGA-CV-6945-01 7 12263867 12263867 G A TMEM106B Missense_Mutation p.M99I 0.22 tolerated(0.17) benign(0.003) TCGA-CV-6945-01 7 141673487 141673487 C T TAS2R38 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0.05) probably_damaging(0.98) TCGA-CV-6945-01 7 148767797 148767797 C A ZNF786 Silent p.A689A 0.27 TCGA-CV-6945-01 7 2618149 2618149 G T IQCE Missense_Mutation p.D207Y 0.25 deleterious(0) probably_damaging(0.933) TCGA-CV-6945-01 7 63727013 63727013 C A ZNF679 Missense_Mutation p.N334K 0.29 tolerated(0.32) benign(0.007) TCGA-CV-6945-01 7 82584801 82584801 G A PCLO Missense_Mutation p.P1823L 0.22 unknown(0) TCGA-CV-6945-01 7 87785302 87785302 G T ADAM22 Nonsense_Mutation p.G630* 0.24 TCGA-CV-6945-01 7 92905483 92905483 A G CCDC132 Missense_Mutation p.M270V 0.32 tolerated(0.14) possibly_damaging(0.497) TCGA-CV-6945-01 7 97482391 97482391 T A ASNS Missense_Mutation p.Q486L 0.20 deleterious(0.01) benign(0.236) TCGA-CV-6945-01 7 97939786 97939786 G A BAIAP2L1 Missense_Mutation p.P309L 0.22 deleterious(0.05) benign(0.03) TCGA-CV-6945-01 8 114326998 114326998 G C CSMD3 Missense_Mutation p.T68S 0.05 tolerated(0.31) possibly_damaging(0.626) TCGA-CV-6945-01 8 131127924 131127924 T C ASAP1 Missense_Mutation p.N708D 0.11 tolerated(0.2) possibly_damaging(0.622) TCGA-CV-6945-01 8 139160820 139160820 C T FAM135B Missense_Mutation p.E1131K 0.19 deleterious(0) benign(0.196) TCGA-CV-6945-01 8 141521631 141521631 C A CHRAC1 Silent p.G11G 0.43 TCGA-CV-6945-01 8 70744880 70744880 C A SLCO5A1 Missense_Mutation p.G10V 0.25 tolerated_low_confidence(0.12) benign(0.021) TCGA-CV-6945-01 8 86385963 86385963 C G CA2 Missense_Mutation p.Q92E 0.20 deleterious(0.01) possibly_damaging(0.837) TCGA-CV-6945-01 8 88886052 88886052 G T DCAF4L2 Missense_Mutation p.R50S 0.26 deleterious(0.01) benign(0.424) TCGA-CV-6945-01 9 122011377 122011377 C T BRINP1 Silent p.L90L 0.37 TCGA-CV-6945-01 9 15478476 15478485 TGTCACTCTC - PSIP1 Frame_Shift_Del p.E207Sfs*55 0.26 TCGA-CV-6945-01 9 34249862 34249862 C T UBAP1 Missense_Mutation p.P454L 0.39 tolerated(0.07) benign(0.015) TCGA-CV-6945-01 X 101408934 101408934 C T BEX5 Missense_Mutation p.D102N 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-CV-6945-01 X 123556459 123556459 T C TENM1 Silent p.A1378A 0.55 TCGA-CV-6945-01 X 1538002 1538002 C T ASMTL Silent p.A417A 0.15 TCGA-CV-6945-01 X 37027194 37027194 G A FAM47C Silent p.E237E 0.69 TCGA-CV-6945-01 X 41333914 41333915 - A NYX Frame_Shift_Ins p.E404Rfs*89 0.38 TCGA-CV-6945-01 X 44703891 44703891 G C DUSP21 Silent p.S171S 0.26 TCGA-CV-6945-01 X 57935809 57935809 G A ZXDA Missense_Mutation p.A349V 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-CV-6945-01 X 73962796 73962796 G C KIAA2022 Silent p.T532T 0.65 TCGA-CV-6948-01 10 102891411 102891411 C G TLX1 Missense_Mutation p.S38W 0.35 deleterious(0.01) possibly_damaging(0.672) TCGA-CV-6948-01 10 114158684 114158684 A G ACSL5 Missense_Mutation p.Q117R 0.43 tolerated(0.55) possibly_damaging(0.454) TCGA-CV-6948-01 10 114171725 114171725 G C ACSL5 Missense_Mutation p.E368D 0.04 deleterious(0.01) benign(0.149) TCGA-CV-6948-01 10 13240697 13240697 G T MCM10 Nonsense_Mutation p.E711* 0.42 TCGA-CV-6948-01 10 38651237 38651237 C G HSD17B7P2 RNA 0.32 TCGA-CV-6948-01 10 6061875 6061875 C T IL2RA Missense_Mutation p.G205S 0.33 tolerated(0.6) benign(0.001) TCGA-CV-6948-01 10 75552076 75552076 T A ZSWIM8 Missense_Mutation p.S593R 0.45 tolerated_low_confidence(0.21) benign(0) TCGA-CV-6948-01 10 863817 863817 G A LARP4B Nonsense_Mutation p.Q515* 0.32 TCGA-CV-6948-01 10 90521213 90521213 T C LIPN Silent p.N17N 0.39 TCGA-CV-6948-01 11 102993566 102993566 A C DYNC2H1 Missense_Mutation p.I500L 0.38 benign(0.001) TCGA-CV-6948-01 11 122850009 122850009 C T BSX Missense_Mutation p.R140Q 0.31 deleterious(0) probably_damaging(1) TCGA-CV-6948-01 11 19970445 19970445 G A NAV2 Missense_Mutation p.V845M 0.76 tolerated(1) benign(0.004) TCGA-CV-6948-01 11 36614509 36614509 C T RAG2 Missense_Mutation p.E404K 0.60 deleterious(0) probably_damaging(0.991) TCGA-CV-6948-01 11 62384617 62384617 G A B3GAT3 Missense_Mutation p.H154Y 0.44 deleterious(0.01) benign(0) TCGA-CV-6948-01 11 64883456 64883456 G A TM7SF2 Silent p.Q396Q 0.40 TCGA-CV-6948-01 11 66039643 66039643 G C RAB1B Missense_Mutation p.E35Q 0.33 tolerated(0.08) benign(0.081) TCGA-CV-6948-01 11 6640542 6640542 T C TPP1 Intron 0.65 TCGA-CV-6948-01 11 67816400 67816400 A T TCIRG1 Missense_Mutation p.M537L 0.42 tolerated(0.18) probably_damaging(0.997) TCGA-CV-6948-01 11 7063670 7063670 G T NLRP14 Missense_Mutation p.W138L 0.64 tolerated(0.45) benign(0.004) TCGA-CV-6948-01 11 7950014 7950014 A C OR10A6 Missense_Mutation p.L66V 0.67 deleterious(0.01) probably_damaging(0.966) TCGA-CV-6948-01 11 89902099 89902099 G C NAALAD2 Missense_Mutation p.E427D 0.22 tolerated(0.14) benign(0.048) TCGA-CV-6948-01 12 104118864 104118864 A T STAB2 Missense_Mutation p.I1599F 0.82 deleterious(0) possibly_damaging(0.856) TCGA-CV-6948-01 12 104390557 104390557 C T GLT8D2 Missense_Mutation p.D186N 0.74 tolerated(0.09) benign(0.382) TCGA-CV-6948-01 12 112665943 112665943 C T HECTD4 Silent p.G2122G 0.64 TCGA-CV-6948-01 12 4479837 4479837 C G FGF23 Missense_Mutation p.R143T 0.38 deleterious(0.01) benign(0.204) TCGA-CV-6948-01 12 51281127 51281127 G A TMPRSS12 Missense_Mutation p.G293D 0.42 deleterious(0) probably_damaging(0.998) TCGA-CV-6948-01 12 53164843 53164843 T G KRT76 Missense_Mutation p.K475T 0.08 deleterious(0) probably_damaging(0.996) TCGA-CV-6948-01 12 55759093 55759093 C T OR6C75 Silent p.L67L 0.39 TCGA-CV-6948-01 12 57594938 57594938 T C LRP1 Splice_Site p.X3449_splice 0.35 TCGA-CV-6948-01 12 68645319 68645319 G T IL22 Missense_Mutation p.Q146K 0.15 deleterious(0.01) benign(0.021) TCGA-CV-6948-01 12 68719244 68719244 C A MDM1 Missense_Mutation p.A204S 0.21 tolerated(1) benign(0.014) TCGA-CV-6948-01 12 7842556 7842556 G A GDF3 Missense_Mutation p.S338F 0.32 deleterious(0) probably_damaging(1) TCGA-CV-6948-01 12 89917406 89917406 A T GALNT4 Silent p.P307P 0.08 TCGA-CV-6948-01 13 113777199 113777199 C T F10 Silent p.L10L 0.31 TCGA-CV-6948-01 13 26975692 26975692 G A CDK8 Silent p.P400P 0.14 TCGA-CV-6948-01 13 77671556 77671556 C G MYCBP2 Missense_Mutation p.G3207R 0.34 probably_damaging(0.999) TCGA-CV-6948-01 13 88327892 88327892 C T SLITRK5 Silent p.I83I 0.37 TCGA-CV-6948-01 13 88328028 88328029 - G SLITRK5 Frame_Shift_Ins p.L131Ffs*9 0.32 TCGA-CV-6948-01 14 100125954 100125954 C T HHIPL1 Silent p.R412R 0.60 TCGA-CV-6948-01 14 105421961 105421961 C T AHNAK2 Missense_Mutation p.E109K 0.38 possibly_damaging(0.595) TCGA-CV-6948-01 14 22315302 22315302 C T TRAV8-2 Silent p.N80N 0.42 TCGA-CV-6948-01 14 22356496 22356496 C A TRAV12-2 Missense_Mutation p.Q52K 0.39 tolerated(0.07) benign(0.219) TCGA-CV-6948-01 14 24034829 24034829 C T AP1G2 Missense_Mutation p.D243N 0.35 deleterious(0.01) benign(0.083) TCGA-CV-6948-01 14 24884134 24884134 C T NYNRIN Missense_Mutation p.A1060V 0.07 tolerated_low_confidence(1) benign(0) TCGA-CV-6948-01 14 45414307 45414307 C T KLHL28 Missense_Mutation p.M275I 0.43 tolerated(0.4) benign(0) TCGA-CV-6948-01 14 50616839 50616839 T A SOS2 Silent p.P757P 0.33 TCGA-CV-6948-01 14 64518544 64518544 C G SYNE2 Missense_Mutation p.T2638S 0.12 benign(0.204) TCGA-CV-6948-01 14 64891551 64891551 G T MTHFD1 Missense_Mutation p.V253L 0.09 deleterious(0.04) probably_damaging(0.994) TCGA-CV-6948-01 14 68108986 68108986 C T ARG2 Missense_Mutation p.R90C 0.43 deleterious(0) probably_damaging(0.996) TCGA-CV-6948-01 14 74874373 74874373 C T SYNDIG1L Silent p.G194G 0.32 TCGA-CV-6948-01 14 76425483 76425483 C G TGFB3 3'UTR 0.43 TCGA-CV-6948-01 14 91787565 91787565 G A CCDC88C Nonsense_Mutation p.Q476* 0.30 TCGA-CV-6948-01 14 94722876 94722876 G T PPP4R4 Nonsense_Mutation p.E649* 0.16 TCGA-CV-6948-01 15 50264849 50264849 G T ATP8B4 Silent p.S391S 0.88 TCGA-CV-6948-01 15 50769168 50769168 G A USP8 Silent p.Q324Q 0.64 TCGA-CV-6948-01 15 75982451 75982451 G A CSPG4 Missense_Mutation p.R319W 0.65 deleterious(0.03) possibly_damaging(0.846) TCGA-CV-6948-01 15 83820108 83820108 G A HDGFRP3 Silent p.S155S 0.34 TCGA-CV-6948-01 16 11004076 11004076 G T CIITA Nonsense_Mutation p.E950* 0.31 TCGA-CV-6948-01 16 1245997 1245997 C T CACNA1H Missense_Mutation p.P206L 0.42 deleterious(0) probably_damaging(1) TCGA-CV-6948-01 16 15457778 15457778 T C NPIPA5 Missense_Mutation p.K264R 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-CV-6948-01 16 15797863 15797863 G A MYH11 Silent p.T1975T 0.41 TCGA-CV-6948-01 16 2201695 2201695 G T RAB26 Splice_Site p.X117_splice 0.35 TCGA-CV-6948-01 16 30536326 30536326 C A ZNF768 Missense_Mutation p.G379C 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-6948-01 16 31422110 31422110 G T ITGAD Missense_Mutation p.A423S 0.33 deleterious(0) probably_damaging(0.993) TCGA-CV-6948-01 16 74695292 74695292 T A RFWD3 Missense_Mutation p.Q19L 0.40 tolerated_low_confidence(0.17) benign(0) TCGA-CV-6948-01 16 81399047 81399047 C T GAN Missense_Mutation p.T489I 0.49 tolerated(0.44) benign(0.058) TCGA-CV-6948-01 16 8990890 8990890 C G USP7 Missense_Mutation p.V929L 0.05 tolerated(0.17) benign(0.004) TCGA-CV-6948-01 17 26125804 26125804 G C NOS2 Missense_Mutation p.T11S 0.48 tolerated_low_confidence(0.98) benign(0.001) TCGA-CV-6948-01 17 27009843 27009843 C T SUPT6H Missense_Mutation p.P566S 0.41 deleterious(0) probably_damaging(0.994) TCGA-CV-6948-01 17 28849455 28849455 G C GOSR1 3'UTR 0.40 TCGA-CV-6948-01 17 34266424 34266424 G A LYZL6 5'UTR 0.33 TCGA-CV-6948-01 17 35306512 35306512 G A AATF Silent p.E29E 0.33 TCGA-CV-6948-01 17 3631298 3631298 C T ITGAE Missense_Mutation p.G1000E 0.44 tolerated(0.18) benign(0.252) TCGA-CV-6948-01 17 39274113 39274113 G A KRTAP4-11 Missense_Mutation p.S152F 0.24 deleterious(0.01) unknown(0) TCGA-CV-6948-01 17 40725103 40725103 G C MLX 3'UTR 0.41 TCGA-CV-6948-01 17 55189196 55189197 - T AKAP1 Frame_Shift_Ins p.V630Cfs*77 0.32 TCGA-CV-6948-01 17 58042024 58042024 T C RNFT1 Translation_Start_Site p.M1? 0.38 tolerated_low_confidence(0.05) unknown(0) TCGA-CV-6948-01 17 60685501 60685501 G C TLK2 Missense_Mutation p.E691Q 0.54 deleterious(0) probably_damaging(0.956) TCGA-CV-6948-01 17 73624385 73624385 G A RECQL5 Silent p.S906S 0.12 TCGA-CV-6948-01 17 7576928 7576928 T C TP53 Splice_Site p.X307_splice 0.49 TCGA-CV-6948-01 17 7577032 7577033 CC - TP53 Frame_Shift_Del p.G302Efs*3 0.31 TCGA-CV-6948-01 17 78322014 78322014 C A RNF213 Missense_Mutation p.H3293Q 0.06 probably_damaging(0.953) TCGA-CV-6948-01 18 8296397 8296397 A C PTPRM Missense_Mutation p.D929A 0.07 deleterious(0.01) benign(0.164) TCGA-CV-6948-01 19 10675688 10675688 C T KRI1 Missense_Mutation p.R70Q 0.33 tolerated(0.23) benign(0.024) TCGA-CV-6948-01 19 11537725 11537725 C G CCDC151 Missense_Mutation p.E194Q 0.40 deleterious(0.04) probably_damaging(0.986) TCGA-CV-6948-01 19 15052714 15052714 C A OR7C2 Silent p.P138P 0.35 TCGA-CV-6948-01 19 15288423 15288423 T C NOTCH3 Missense_Mutation p.N1439S 0.78 deleterious(0) possibly_damaging(0.903) TCGA-CV-6948-01 19 15514345 15514345 C T AKAP8L Missense_Mutation p.M101I 0.38 deleterious(0.02) benign(0.049) TCGA-CV-6948-01 19 15905429 15905429 G A OR10H5 Missense_Mutation p.D191N 0.06 tolerated(0.22) benign(0.002) TCGA-CV-6948-01 19 17988641 17988641 G A SLC5A5 Missense_Mutation p.V270M 0.40 deleterious(0.02) benign(0.378) TCGA-CV-6948-01 19 18368445 18368445 C T KIAA1683 Missense_Mutation p.D1217N 0.36 deleterious(0.01) possibly_damaging(0.582) TCGA-CV-6948-01 19 20736633 20736633 C T ZNF737 Silent p.L4L 0.46 TCGA-CV-6948-01 19 32844322 32844322 C T ZNF507 Missense_Mutation p.P196S 0.44 tolerated(0.71) benign(0) TCGA-CV-6948-01 19 36210733 36210733 C T KMT2B Missense_Mutation p.P162S 0.34 unknown(0) TCGA-CV-6948-01 19 39336596 39336596 G C HNRNPL Missense_Mutation p.S174C 0.34 deleterious(0.02) benign(0.037) TCGA-CV-6948-01 19 45496120 45496120 C T CLPTM1 Missense_Mutation p.P659S 0.37 tolerated_low_confidence(0.31) unknown(0) TCGA-CV-6948-01 19 45762300 45762300 C - MARK4 Frame_Shift_Del p.R36Afs*27 0.32 TCGA-CV-6948-01 19 45810135 45810135 T C CKM Missense_Mutation p.D340G 0.32 deleterious(0) probably_damaging(0.998) TCGA-CV-6948-01 19 46027399 46027399 A T VASP Missense_Mutation p.R319W 0.50 deleterious(0) probably_damaging(0.997) TCGA-CV-6948-01 19 49183902 49183902 G A RN7SL345P 5'Flank 0.43 TCGA-CV-6948-01 19 49464406 49464406 C G BAX 3'UTR 0.40 TCGA-CV-6948-01 19 50162899 50162899 G A IRF3 Missense_Mutation p.R436C 0.27 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-CV-6948-01 19 52132769 52132769 G A SIGLEC5 Missense_Mutation p.T181M 0.53 tolerated(0.15) benign(0.019) TCGA-CV-6948-01 19 52383641 52383641 T C ZNF577 5'UTR 0.46 TCGA-CV-6948-01 19 53854940 53854940 C G ZNF845 Missense_Mutation p.Q338E 0.37 tolerated(0.33) possibly_damaging(0.509) TCGA-CV-6948-01 19 54401792 54401792 G C PRKCG Silent p.L397L 0.39 TCGA-CV-6948-01 19 57988707 57988707 C G ZNF772 5'UTR 0.60 TCGA-CV-6948-01 19 9868519 9868519 G T ZNF846 Missense_Mutation p.H412N 0.35 deleterious(0) probably_damaging(0.998) TCGA-CV-6948-01 1 114308567 114308567 A T RSBN1 3'UTR 0.79 TCGA-CV-6948-01 1 151640992 151640992 C T SNX27 Nonsense_Mutation p.Q344* 0.23 TCGA-CV-6948-01 1 152276850 152276850 C T FLG Silent p.S3504S 0.39 TCGA-CV-6948-01 1 156106747 156106747 G A LMNA Silent p.Q472Q 0.56 TCGA-CV-6948-01 1 156713224 156713224 T C HDGF 3'UTR 0.45 TCGA-CV-6948-01 1 180910242 180910242 A G KIAA1614 Missense_Mutation p.K994E 0.11 deleterious(0.01) benign(0.234) TCGA-CV-6948-01 1 186321170 186321170 C G TPR Missense_Mutation p.E803Q 0.16 benign(0.403) TCGA-CV-6948-01 1 204416561 204416561 C T PIK3C2B Intron 0.31 TCGA-CV-6948-01 1 209796421 209796421 A C LAMB3 Missense_Mutation p.V821G 0.41 deleterious(0.01) benign(0.028) TCGA-CV-6948-01 1 214542900 214542900 C T PTPN14 Silent p.K1057K 0.30 TCGA-CV-6948-01 1 216595769 216595769 A G USH2A 5'UTR 0.40 TCGA-CV-6948-01 1 226125198 226125198 C A LEFTY2 Silent p.V348V 0.36 TCGA-CV-6948-01 1 226454018 226454018 C T LIN9 Missense_Mutation p.E294K 0.27 deleterious(0) possibly_damaging(0.844) TCGA-CV-6948-01 1 227170663 227170663 C T ADCK3 Silent p.F336F 0.44 TCGA-CV-6948-01 1 228492963 228492963 A G OBSCN Silent p.R4802R 0.39 TCGA-CV-6948-01 1 247921171 247921171 C G OR1C1 Missense_Mutation p.D180H 0.38 deleterious(0) probably_damaging(0.999) TCGA-CV-6948-01 1 248005020 248005020 T A OR11L1 Missense_Mutation p.Y60F 0.34 deleterious(0.05) benign(0.025) TCGA-CV-6948-01 1 248458698 248458698 C T OR2T12 Silent p.L61L 0.44 TCGA-CV-6948-01 1 27875791 27875792 - G AHDC1 Frame_Shift_Ins p.K946Qfs*40 0.45 TCGA-CV-6948-01 1 39951383 39951383 G A MACF1 Missense_Mutation p.G5404R 0.04 benign(0.379) TCGA-CV-6948-01 1 40929123 40929123 C G ZFP69B Silent p.S489S 0.08 TCGA-CV-6948-01 1 44365306 44365306 T A ST3GAL3 Silent p.P286P 0.42 TCGA-CV-6948-01 1 44467092 44467094 GAA - SLC6A9 In_Frame_Del p.F463del 0.30 TCGA-CV-6948-01 1 52823543 52823543 C G CC2D1B Missense_Mutation p.A503P 0.73 tolerated(0.2) possibly_damaging(0.851) TCGA-CV-6948-01 1 7798213 7798213 G A CAMTA1 Missense_Mutation p.E1285K 0.62 tolerated_low_confidence(0.25) benign(0.154) TCGA-CV-6948-01 1 86961316 86961316 C T CLCA1 Nonsense_Mutation p.Q691* 0.73 TCGA-CV-6948-01 20 19937366 19937366 G A RIN2 Missense_Mutation p.R138Q 0.12 deleterious(0) benign(0.025) TCGA-CV-6948-01 20 25197285 25197285 C A ENTPD6 Silent p.G237G 0.34 TCGA-CV-6948-01 20 29891043 29891043 G T DEFB116 Missense_Mutation p.T94K 0.30 tolerated(0.14) benign(0.003) TCGA-CV-6948-01 20 31587898 31587898 G C SUN5 Missense_Mutation p.L108V 0.15 deleterious(0.05) possibly_damaging(0.471) TCGA-CV-6948-01 20 31699256 31699256 G A BPIFB4 3'UTR 0.22 TCGA-CV-6948-01 20 33502206 33502206 C - ACSS2 Frame_Shift_Del p.P269Qfs*13 0.30 TCGA-CV-6948-01 20 34505531 34505531 G A PHF20 Missense_Mutation p.E651K 0.28 deleterious(0) possibly_damaging(0.868) TCGA-CV-6948-01 20 3739186 3739186 G C C20orf27 Silent p.V78V 0.04 TCGA-CV-6948-01 20 57769026 57769026 G T ZNF831 Silent p.L984L 0.70 TCGA-CV-6948-01 21 37741537 37741537 C G MORC3 Nonsense_Mutation p.S624* 0.28 TCGA-CV-6948-01 21 43962541 43962541 G A SLC37A1 Missense_Mutation p.G172S 0.41 deleterious(0) probably_damaging(1) TCGA-CV-6948-01 22 16279295 16279295 G T POTEH Missense_Mutation p.L310I 0.07 deleterious(0.05) possibly_damaging(0.734) TCGA-CV-6948-01 22 42606032 42606032 G A TCF20 Silent p.S1760S 0.31 TCGA-CV-6948-01 2 108626706 108626706 G A SLC5A7 Missense_Mutation p.V378I 0.39 tolerated(0.76) benign(0.005) TCGA-CV-6948-01 2 160663608 160663608 G C LY75-CD302 Silent p.V1622V 0.26 TCGA-CV-6948-01 2 170591601 170591601 T C KLHL23 Missense_Mutation p.F26S 0.04 deleterious(0) possibly_damaging(0.842) TCGA-CV-6948-01 2 182387035 182387035 C T ITGA4 Silent p.P680P 0.31 TCGA-CV-6948-01 2 185801843 185801843 G T ZNF804A Missense_Mutation p.D574Y 0.32 deleterious(0) possibly_damaging(0.754) TCGA-CV-6948-01 2 202625540 202625540 C T ALS2 Intron 0.23 TCGA-CV-6948-01 2 238280262 238280262 A G COL6A3 Intron 0.21 TCGA-CV-6948-01 2 238483689 238483689 C T RAB17 Silent p.A204A 0.45 TCGA-CV-6948-01 2 242380775 242380775 C G FARP2 Silent p.A405A 0.32 TCGA-CV-6948-01 2 26203809 26203809 G C KIF3C Silent p.L326L 0.33 TCGA-CV-6948-01 2 27263739 27263739 G T TMEM214 3'UTR 0.44 TCGA-CV-6948-01 2 37506980 37506980 C T PRKD3 Missense_Mutation p.E361K 0.49 tolerated(0.24) benign(0.045) TCGA-CV-6948-01 2 38302373 38302373 G A CYP1B1 Silent p.G53G 0.46 TCGA-CV-6948-01 2 44099198 44099198 C T ABCG8 Silent p.L350L 0.41 TCGA-CV-6948-01 2 44162018 44162018 C A LRPPRC Splice_Site p.X835_splice 0.38 TCGA-CV-6948-01 2 56149558 56149558 G A EFEMP1 Silent p.F6F 0.47 TCGA-CV-6948-01 3 113375182 113375182 G A KIAA2018 Missense_Mutation p.P1783S 0.27 benign(0.242) TCGA-CV-6948-01 3 138400825 138400825 C T PIK3CB Missense_Mutation p.A830T 0.32 deleterious(0.01) benign(0.175) TCGA-CV-6948-01 3 139069822 139069822 A G MRPS22 Missense_Mutation p.M218V 0.24 tolerated(1) benign(0.002) TCGA-CV-6948-01 3 14565164 14565164 C T GRIP2 RNA 0.70 TCGA-CV-6948-01 3 155860955 155860955 G T KCNAB1 Intron 0.20 TCGA-CV-6948-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.14 deleterious(0.02) probably_damaging(0.959) TCGA-CV-6948-01 3 183885748 183885748 C T DVL3 Missense_Mutation p.R465C 0.25 deleterious(0) probably_damaging(0.997) TCGA-CV-6948-01 3 183907447 183907447 C T ABCF3 Missense_Mutation p.R406W 0.32 deleterious(0) probably_damaging(0.998) TCGA-CV-6948-01 3 185797720 185797721 - G ETV5 Frame_Shift_Ins p.H179Pfs*31 0.26 TCGA-CV-6948-01 3 49053902 49053902 G A DALRD3 Missense_Mutation p.T369I 0.70 deleterious(0) benign(0.382) TCGA-CV-6948-01 3 49278823 49278823 G T CCDC36 Splice_Site p.X132_splice 0.70 TCGA-CV-6948-01 3 5246816 5246816 G A EDEM1 Silent p.L369L 0.67 TCGA-CV-6948-01 3 97851777 97851777 C A OR5H1 Missense_Mutation p.P79Q 0.24 deleterious(0) probably_damaging(0.972) TCGA-CV-6948-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.76 deleterious(0) probably_damaging(1) TCGA-CV-6948-01 4 177605120 177605120 C T VEGFC Missense_Mutation p.R407H 0.30 tolerated(0.16) probably_damaging(0.999) TCGA-CV-6948-01 4 17805431 17805431 C T DCAF16 Missense_Mutation p.E112K 0.53 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-CV-6948-01 4 184366790 184366790 G A CDKN2AIP Silent p.V125V 0.64 TCGA-CV-6948-01 4 38798908 38798908 C A TLR1 Missense_Mutation p.K515N 0.73 tolerated(0.64) benign(0.006) TCGA-CV-6948-01 4 42618055 42618055 G A ATP8A1 Missense_Mutation p.T135M 0.71 deleterious(0.01) benign(0.438) TCGA-CV-6948-01 4 71702029 71702029 C T GRSF1 Silent p.E120E 0.37 TCGA-CV-6948-01 4 76813090 76813090 A C PPEF2 Missense_Mutation p.Y33D 0.26 deleterious(0) probably_damaging(0.937) TCGA-CV-6948-01 4 95376534 95376534 G A PDLIM5 Missense_Mutation p.S32N 0.59 deleterious(0.01) possibly_damaging(0.852) TCGA-CV-6948-01 5 10256236 10256236 G A CCT5 Silent p.Q167Q 0.45 TCGA-CV-6948-01 5 112175991 112175991 C G APC Nonsense_Mutation p.S1567* 0.66 TCGA-CV-6948-01 5 138707837 138707837 A G SLC23A1 Missense_Mutation p.I556T 0.48 tolerated(0.4) benign(0.001) TCGA-CV-6948-01 5 140580820 140580820 C A PCDHB11 Silent p.L491L 0.41 TCGA-CV-6948-01 5 140763371 140763371 C A PCDHGA7 Nonsense_Mutation p.S302* 0.35 TCGA-CV-6948-01 5 148929773 148929773 C G CSNK1A1 Intron 0.44 TCGA-CV-6948-01 5 167991072 167991072 T G PANK3 Splice_Site p.X212_splice 0.17 TCGA-CV-6948-01 5 177639971 177639971 C G PHYKPL Intron 0.63 TCGA-CV-6948-01 5 74801935 74801935 T C COL4A3BP Missense_Mutation p.N163D 0.84 deleterious(0) probably_damaging(0.999) TCGA-CV-6948-01 5 79770505 79770505 G A ZFYVE16 Silent p.Q1439Q 0.62 TCGA-CV-6948-01 5 88018742 88018742 T C MEF2C Silent p.G377G 0.36 TCGA-CV-6948-01 5 89988434 89988434 C A GPR98 Missense_Mutation p.Q2322K 0.71 possibly_damaging(0.678) TCGA-CV-6948-01 6 118556746 118556746 G T SLC35F1 Missense_Mutation p.A142S 0.37 deleterious(0) possibly_damaging(0.571) TCGA-CV-6948-01 6 134210616 134210616 G A TCF21 Silent p.S27S 0.44 TCGA-CV-6948-01 6 146126431 146126431 C T FBXO30 Missense_Mutation p.D371N 0.41 tolerated(0.54) benign(0.004) TCGA-CV-6948-01 6 17600920 17600920 G A FAM8A1 Missense_Mutation p.E94K 0.60 deleterious(0.03) probably_damaging(0.959) TCGA-CV-6948-01 6 24146264 24146264 G C NRSN1 3'UTR 0.46 TCGA-CV-6948-01 6 26452390 26452390 G T BTN3A3 Missense_Mutation p.L502F 0.24 tolerated(0.16) benign(0.199) TCGA-CV-6948-01 6 27835121 27835121 C - HIST1H1B Frame_Shift_Del p.A63Qfs*7 0.10 TCGA-CV-6948-01 6 28871930 28871930 G C TRIM27 Missense_Mutation p.L487V 0.47 deleterious(0) possibly_damaging(0.837) TCGA-CV-6948-01 6 30105123 30105123 G A TRIM40 Missense_Mutation p.E104K 0.43 deleterious(0.02) probably_damaging(0.992) TCGA-CV-6948-01 6 30530165 30530165 G T PRR3 Splice_Site p.X154_splice 0.28 TCGA-CV-6948-01 6 30624230 30624230 G T DHX16 Missense_Mutation p.L790M 0.18 tolerated(0.33) unknown(0) TCGA-CV-6948-01 6 43491459 43491459 T G XPO5 3'UTR 0.44 TCGA-CV-6948-01 6 56481828 56481828 G T DST Intron 0.29 TCGA-CV-6948-01 6 7211049 7211071 CCATGAGAAGGACCCTAACAGTG - RREB1 Frame_Shift_Del p.E148Sfs*11 0.23 TCGA-CV-6948-01 6 78172918 78172918 G A HTR1B Missense_Mutation p.A68V 0.38 tolerated(0.13) benign(0.05) TCGA-CV-6948-01 7 100677499 100677499 G A MUC17 Silent p.T934T 0.43 TCGA-CV-6948-01 7 133689722 133689722 G T EXOC4 Silent p.V802V 0.06 TCGA-CV-6948-01 7 138968956 138968956 G C UBN2 Missense_Mutation p.S1102T 0.48 deleterious_low_confidence(0.01) benign(0.058) TCGA-CV-6948-01 7 143885356 143885356 G C ARHGEF35 Missense_Mutation p.Q41E 0.77 tolerated(0.19) possibly_damaging(0.84) TCGA-CV-6948-01 7 154862903 154862903 G A HTR5A-AS1 Silent p.T37T 0.22 TCGA-CV-6948-01 7 2962348 2962348 G A CARD11 Missense_Mutation p.T730I 0.12 deleterious(0.04) benign(0.183) TCGA-CV-6948-01 7 36633994 36633994 C G AOAH Missense_Mutation p.D297H 0.27 deleterious(0) probably_damaging(0.976) TCGA-CV-6948-01 7 4917456 4917456 C T RADIL Silent p.R105R 0.34 TCGA-CV-6948-01 7 5632776 5632776 T A FSCN1 Missense_Mutation p.L70Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-6948-01 7 5968017 5968017 C T RSPH10B Missense_Mutation p.E748K 0.27 tolerated(0.08) benign(0.367) TCGA-CV-6948-01 7 73649972 73649972 G A RFC2 Missense_Mutation p.L282F 0.35 deleterious(0.01) benign(0.175) TCGA-CV-6948-01 7 7646800 7646800 C G MIOS 3'UTR 0.40 TCGA-CV-6948-01 7 7676611 7676611 C T RPA3 3'UTR 0.50 TCGA-CV-6948-01 7 82584860 82584860 A G PCLO Silent p.S1803S 0.42 TCGA-CV-6948-01 7 92869194 92869194 C G CCDC132 Missense_Mutation p.Q17E 0.35 tolerated_low_confidence(1) benign(0.002) TCGA-CV-6948-01 7 99711345 99711345 G A TAF6 Silent p.A134A 0.17 TCGA-CV-6948-01 8 100513954 100513954 G A VPS13B Missense_Mutation p.D1304N 0.42 tolerated(0.18) probably_damaging(0.98) TCGA-CV-6948-01 8 109252300 109252300 C G EIF3E Missense_Mutation p.L70F 0.19 tolerated(0.18) benign(0.272) TCGA-CV-6948-01 8 113323395 113323395 G T CSMD3 Missense_Mutation p.A2566D 0.20 deleterious(0) possibly_damaging(0.811) TCGA-CV-6948-01 8 128753051 128753051 G C MYC Missense_Mutation p.K404N 0.17 deleterious(0) probably_damaging(0.998) TCGA-CV-6948-01 8 131073299 131073299 T C ASAP1 Silent p.T906T 0.23 TCGA-CV-6948-01 8 133036916 133036916 G A OC90 Missense_Mutation p.L416F 0.21 deleterious(0.02) benign(0.195) TCGA-CV-6948-01 8 144992466 144992479 GCTGGGCTCTGACA - PLEC Frame_Shift_Del p.L3974Rfs*26 0.27 TCGA-CV-6948-01 8 38034614 38034614 G A BAG4 Missense_Mutation p.G76E 0.79 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-CV-6948-01 8 56270346 56270346 G T XKR4 Silent p.L305L 0.54 TCGA-CV-6948-01 8 62212732 62212732 C T CLVS1 Missense_Mutation p.P116S 0.23 deleterious(0.05) benign(0.094) TCGA-CV-6948-01 8 68934274 68934274 G A PREX2 Missense_Mutation p.D114N 0.40 deleterious(0.03) benign(0.089) TCGA-CV-6948-01 8 8234394 8234394 C A SGK223 Nonsense_Mutation p.E509* 0.59 TCGA-CV-6948-01 8 86121536 86121536 C G E2F5 Missense_Mutation p.P259A 0.05 tolerated(0.08) benign(0.016) TCGA-CV-6948-01 8 87076791 87076791 G T PSKH2 Silent p.T85T 0.20 TCGA-CV-6948-01 8 87519250 87519250 G A RMDN1 Missense_Mutation p.A74V 0.37 tolerated(0.21) benign(0.005) TCGA-CV-6948-01 8 94713483 94713483 G T FAM92A1 Missense_Mutation p.V20F 0.21 deleterious(0) probably_damaging(0.947) TCGA-CV-6948-01 9 105767308 105767308 C G CYLC2 Nonsense_Mutation p.S132* 0.18 TCGA-CV-6948-01 9 112168829 112168829 C G PTPN3 Missense_Mutation p.E569Q 0.40 tolerated(0.14) probably_damaging(1) TCGA-CV-6948-01 9 112899008 112899008 G A PALM2-AKAP2 Missense_Mutation p.R395Q 0.84 deleterious(0.02) benign(0.178) TCGA-CV-6948-01 9 121929820 121929820 T G BRINP1 Missense_Mutation p.T610P 0.80 deleterious(0) probably_damaging(0.969) TCGA-CV-6948-01 9 140941353 140941353 C G CACNA1B Intron 0.32 TCGA-CV-6948-01 9 26999638 26999640 ATA - LRRC19 In_Frame_Del p.L18del 0.44 TCGA-CV-6948-01 9 6805612 6805612 A T KDM4C Missense_Mutation p.K53M 0.83 deleterious(0) benign(0.169) TCGA-CV-6948-01 X 105179222 105179222 T C NRK Missense_Mutation p.V1188A 0.69 deleterious(0) probably_damaging(0.98) TCGA-CV-6948-01 X 135439890 135439890 G C GPR112 Missense_Mutation p.A2319P 0.04 deleterious(0) possibly_damaging(0.462) TCGA-CV-6948-01 X 26212041 26212041 G C MAGEB6 Silent p.T26T 0.63 TCGA-CV-6948-01 X 51639730 51639730 C T MAGED1 Nonsense_Mutation p.Q383* 0.76 TCGA-CV-6948-01 X 83129489 83129489 A G CYLC1 Silent p.K591K 0.09 TCGA-CV-6950-01 11 108206667 108206667 A C ATM Missense_Mutation p.K2749N 0.52 deleterious(0.04) possibly_damaging(0.62) TCGA-CV-6950-01 11 55658941 55658943 GTG - TRIM51 In_Frame_Del p.V399del 0.24 TCGA-CV-6950-01 11 755976 755976 G A TALDO1 Silent p.A65A 0.13 TCGA-CV-6950-01 12 111758147 111758147 G T CUX2 Missense_Mutation p.E778D 0.29 deleterious(0) probably_damaging(0.949) TCGA-CV-6950-01 12 49444269 49444276 GGGAACCA - KMT2D Frame_Shift_Del p.L1032Pfs*33 0.19 TCGA-CV-6950-01 12 54756330 54756330 G T GPR84 3'UTR 0.33 TCGA-CV-6950-01 12 8212707 8212707 G A C3AR1 Silent p.L25L 0.30 TCGA-CV-6950-01 13 28004707 28004707 A T GTF3A Missense_Mutation p.H146L 0.50 deleterious(0) probably_damaging(0.998) TCGA-CV-6950-01 13 77662989 77662989 G A MYCBP2 Missense_Mutation p.A3530V 0.42 probably_damaging(0.98) TCGA-CV-6950-01 14 104167058 104167058 C T KLC1 Silent p.T616T 0.13 TCGA-CV-6950-01 14 22309894 22309894 T A TRAV12-1 Missense_Mutation p.I92N 0.72 deleterious(0) possibly_damaging(0.477) TCGA-CV-6950-01 14 23447604 23447604 G A AJUBA Nonsense_Mutation p.Q353* 0.72 TCGA-CV-6950-01 14 50597456 50597456 T C SOS2 Missense_Mutation p.K1034E 0.10 deleterious(0) probably_damaging(0.971) TCGA-CV-6950-01 14 89091394 89091394 C T EML5 Silent p.A1606A 0.09 TCGA-CV-6950-01 15 28467346 28467346 T C HERC2 Missense_Mutation p.N1827S 0.23 benign(0.001) TCGA-CV-6950-01 15 35082732 35082732 A G ACTC1 Missense_Mutation p.Y339H 0.23 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-CV-6950-01 16 2160250 2160250 C G PKD1 Missense_Mutation p.G1640R 0.56 possibly_damaging(0.557) TCGA-CV-6950-01 16 30002124 30002124 A G TAOK2 3'Flank 0.35 TCGA-CV-6950-01 17 40986550 40986550 A G PSME3 Missense_Mutation p.N32D 0.27 tolerated(0.53) benign(0.108) TCGA-CV-6950-01 17 7578241 7578241 A - TP53 Frame_Shift_Del p.V203Gfs*44 0.35 TCGA-CV-6950-01 18 67801778 67801778 C T RTTN Splice_Site p.X962_splice 0.11 TCGA-CV-6950-01 19 10624909 10624909 A T S1PR5 Missense_Mutation p.F260Y 0.64 deleterious(0) possibly_damaging(0.679) TCGA-CV-6950-01 19 42584699 42584699 C T ZNF574 Silent p.S647S 0.20 TCGA-CV-6950-01 19 44097383 44097383 C T IRGQ Missense_Mutation p.A223T 0.33 tolerated(0.32) probably_damaging(0.999) TCGA-CV-6950-01 19 5604923 5604923 T C SAFB2 Missense_Mutation p.N441D 0.12 deleterious(0) possibly_damaging(0.809) TCGA-CV-6950-01 1 169822793 169822793 G T C1orf112 3'UTR 0.28 TCGA-CV-6950-01 1 197091638 197091638 C A ASPM Missense_Mutation p.A1160S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6950-01 1 203452429 203452430 - CCCAGT PRELP In_Frame_Ins p.P40_R41insSP 0.35 TCGA-CV-6950-01 1 249212056 249212056 G T PGBD2 Missense_Mutation p.A425S 0.15 deleterious(0.03) possibly_damaging(0.867) TCGA-CV-6950-01 1 46511672 46511672 C T PIK3R3 Missense_Mutation p.E369K 0.20 deleterious(0) probably_damaging(1) TCGA-CV-6950-01 1 86196225 86196225 G C COL24A1 3'UTR 0.19 TCGA-CV-6950-01 20 30433105 30433105 G T FOXS1 Missense_Mutation p.R81S 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-6950-01 20 33519179 33519179 G A GSS Silent p.A357A 0.21 TCGA-CV-6950-01 20 5903296 5903296 A G CHGB Missense_Mutation p.E169G 0.06 tolerated(0.19) benign(0.269) TCGA-CV-6950-01 22 24439496 24439496 C T CABIN1 Missense_Mutation p.P159L 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-CV-6950-01 22 26164180 26164180 T C MYO18B Silent p.P99P 0.10 TCGA-CV-6950-01 2 107423131 107423131 T A ST6GAL2 3'UTR 0.11 TCGA-CV-6950-01 2 198285265 198285265 T C SF3B1 Missense_Mutation p.Y101C 0.60 tolerated(0.17) possibly_damaging(0.502) TCGA-CV-6950-01 2 241689923 241689923 A G KIF1A Missense_Mutation p.L967P 0.05 deleterious(0) probably_damaging(0.951) TCGA-CV-6950-01 3 122354785 122354785 C T PARP15 Silent p.F625F 0.28 TCGA-CV-6950-01 3 132219737 132219737 C T DNAJC13 Missense_Mutation p.R1506W 0.30 deleterious(0) probably_damaging(0.959) TCGA-CV-6950-01 3 151112629 151112629 C T MED12L Nonsense_Mutation p.Q1897* 0.13 TCGA-CV-6950-01 3 185975671 185975671 C T DGKG Silent p.G494G 0.41 TCGA-CV-6950-01 4 100268199 100268199 C T ADH1C Missense_Mutation p.E75K 0.24 benign(0.085) TCGA-CV-6950-01 4 119951990 119951990 C A SYNPO2 Missense_Mutation p.A687D 0.24 deleterious(0) probably_damaging(0.991) TCGA-CV-6950-01 4 15638198 15638198 T A FBXL5 Missense_Mutation p.S229C 0.22 deleterious(0.01) possibly_damaging(0.649) TCGA-CV-6950-01 4 49030675 49030675 C A CWH43 Silent p.I432I 0.20 TCGA-CV-6950-01 5 140724693 140724693 G C PCDHGA3 Missense_Mutation p.E365Q 0.43 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-CV-6950-01 5 14758681 14758681 T A ANKH Missense_Mutation p.I114F 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-6950-01 5 158630622 158630622 C A RNF145 Missense_Mutation p.A32S 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.619) TCGA-CV-6950-01 5 17354444 17354444 G A CTD-2139B15.2 RNA 0.23 TCGA-CV-6950-01 5 179320402 179320402 C T TBC1D9B Missense_Mutation p.E215K 0.53 deleterious(0.01) possibly_damaging(0.734) TCGA-CV-6950-01 5 180665329 180665329 C - GNB2L1 Intron 0.32 TCGA-CV-6950-01 6 131602681 131602681 G T AKAP7 Nonsense_Mutation p.G288* 0.27 TCGA-CV-6950-01 6 32119654 32119654 C T PRRT1 5'UTR 0.33 TCGA-CV-6950-01 6 41738404 41738404 C A FRS3 Missense_Mutation p.G478C 0.20 deleterious(0) probably_damaging(1) TCGA-CV-6950-01 6 51524466 51524466 C T PKHD1 Silent p.L3486L 0.31 TCGA-CV-6950-01 6 71247998 71247998 C T FAM135A Silent p.L1374L 0.42 TCGA-CV-6950-01 7 35288434 35288434 G C TBX20 Missense_Mutation p.R134G 0.09 deleterious(0) probably_damaging(0.974) TCGA-CV-6950-01 7 88423535 88423535 A G C7orf62 Missense_Mutation p.L241P 0.37 deleterious(0) possibly_damaging(0.907) TCGA-CV-6950-01 7 91659267 91659267 G T AKAP9 Nonsense_Mutation p.G1403* 0.50 TCGA-CV-6950-01 7 92161858 92161858 A G RBM48 Missense_Mutation p.N148S 0.55 tolerated(0.37) benign(0.004) TCGA-CV-6950-01 8 103287969 103287969 T A UBR5 Silent p.V2199V 0.26 TCGA-CV-6950-01 8 125597387 125597387 C A MTSS1 Missense_Mutation p.R134L 0.29 deleterious(0.02) benign(0.217) TCGA-CV-6950-01 8 52320774 52320774 G A PXDNL Missense_Mutation p.S1137L 0.07 tolerated(1) benign(0) TCGA-CV-6950-01 8 52336259 52336259 G A PXDNL Silent p.F557F 0.18 TCGA-CV-6950-01 8 95531399 95531399 C T KIAA1429 Missense_Mutation p.S776N 0.12 tolerated(0.53) benign(0.107) TCGA-CV-6950-01 9 116131934 116131934 C T BSPRY Missense_Mutation p.P241S 0.13 deleterious(0.03) probably_damaging(0.991) TCGA-CV-6950-01 9 137676879 137676879 A C COL5A1 Missense_Mutation p.E843D 0.55 unknown(0) TCGA-CV-6950-01 9 139354513 139354513 C T SEC16A Missense_Mutation p.R1685Q 0.55 deleterious(0) probably_damaging(0.998) TCGA-CV-6950-01 9 3263051 3263051 G A RFX3 Nonsense_Mutation p.R497* 0.20 TCGA-CV-6950-01 9 86914576 86914576 C A SLC28A3 Missense_Mutation p.G197C 0.18 deleterious(0) probably_damaging(1) TCGA-CV-6950-01 X 108718934 108718934 A G GUCY2F Silent p.L78L 0.68 TCGA-CV-6950-01 X 138832233 138832233 C A ATP11C Nonsense_Mutation p.E930* 0.08 TCGA-CV-6950-01 X 144906483 144906483 G T SLITRK2 3'UTR 0.47 TCGA-CV-6950-01 X 153186904 153186904 T A ARHGAP4 Missense_Mutation p.S117C 0.47 deleterious(0) probably_damaging(0.971) TCGA-CV-6950-01 X 3241944 3241944 C T MXRA5 Silent p.S594S 0.26 TCGA-CV-6951-01 10 119799785 119799785 A G RAB11FIP2 Silent p.F215F 0.24 TCGA-CV-6951-01 10 124348656 124348656 C T DMBT1 Silent p.G660G 0.27 TCGA-CV-6951-01 10 38120569 38120569 T C ZNF248 Missense_Mutation p.R572G 0.16 tolerated(0.52) benign(0.002) TCGA-CV-6951-01 10 43088343 43088343 T C ZNF33B Silent p.R685R 0.28 TCGA-CV-6951-01 10 75556724 75556724 G T ZSWIM8 Missense_Mutation p.G1076W 0.21 deleterious(0.02) possibly_damaging(0.852) TCGA-CV-6951-01 10 81373011 81373011 A G SFTPA1 Missense_Mutation p.Q135R 0.37 tolerated(0.5) possibly_damaging(0.644) TCGA-CV-6951-01 10 93582061 93582061 T A TNKS2 Missense_Mutation p.V246E 0.51 deleterious(0) probably_damaging(1) TCGA-CV-6951-01 11 1263375 1263375 C T MUC5B Silent p.T1755T 0.27 TCGA-CV-6951-01 11 45671418 45671418 G C CHST1 Missense_Mutation p.N352K 0.54 deleterious(0.03) possibly_damaging(0.765) TCGA-CV-6951-01 11 55861217 55861217 G C OR8I2 Missense_Mutation p.G145A 0.46 tolerated(0.32) benign(0.016) TCGA-CV-6951-01 11 64622855 64622855 T C EHD1 Missense_Mutation p.Q340R 0.24 tolerated(0.55) benign(0) TCGA-CV-6951-01 11 65729209 65729209 G T SART1 5'UTR 0.44 TCGA-CV-6951-01 11 68318642 68318642 G T PPP6R3 Silent p.S202S 0.19 TCGA-CV-6951-01 11 72945507 72945507 C T P2RY2 Silent p.F101F 0.17 TCGA-CV-6951-01 11 74800310 74800310 G A OR2AT4 Missense_Mutation p.A150V 0.45 deleterious(0.03) probably_damaging(0.976) TCGA-CV-6951-01 11 77931466 77931466 C T GAB2 Missense_Mutation p.V596I 0.18 tolerated(0.4) benign(0.003) TCGA-CV-6951-01 11 89018057 89018057 G C TYR Missense_Mutation p.R434T 0.26 tolerated(0.59) benign(0.008) TCGA-CV-6951-01 11 9080855 9080855 C G SCUBE2 Missense_Mutation p.C362S 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-6951-01 12 102030483 102030483 C T MYBPC1 Silent p.D189D 0.24 TCGA-CV-6951-01 12 112369498 112369498 C G TMEM116 Missense_Mutation p.R314T 0.26 deleterious(0) probably_damaging(0.998) TCGA-CV-6951-01 12 123019279 123019279 A G KNTC1 Silent p.S66S 0.12 TCGA-CV-6951-01 12 49488008 49488008 G A DHH Silent p.D96D 0.33 TCGA-CV-6951-01 12 52866981 52866981 C T KRT6C Splice_Site p.X180_splice 0.16 TCGA-CV-6951-01 12 53722831 53722831 G T SP7 Missense_Mutation p.T132K 0.29 deleterious(0) benign(0.001) TCGA-CV-6951-01 12 62954421 62954421 C T MON2 Missense_Mutation p.T1187I 0.32 tolerated(0.08) benign(0.009) TCGA-CV-6951-01 12 85623415 85623415 G T LRRIQ1 Missense_Mutation p.R1648I 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-6951-01 12 9307283 9307283 T A PZP Missense_Mutation p.T1235S 0.39 tolerated(0.74) probably_damaging(0.989) TCGA-CV-6951-01 13 114009696 114009696 G C GRTP1 Nonsense_Mutation p.Y94* 0.88 TCGA-CV-6951-01 14 105355876 105355876 C T CEP170B Intron 0.18 TCGA-CV-6951-01 14 31139469 31139469 A G SCFD1 Missense_Mutation p.H288R 0.33 tolerated(0.54) benign(0.038) TCGA-CV-6951-01 14 70634091 70634091 C T SLC8A3 Missense_Mutation p.S350N 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-6951-01 14 93118236 93118236 C T RIN3 Missense_Mutation p.P281L 0.52 tolerated(0.17) unknown(0) TCGA-CV-6951-01 15 42054540 42054540 G C MGA Missense_Mutation p.R2575T 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-6951-01 15 42166142 42166142 G T SPTBN5 Silent p.I1597I 0.48 TCGA-CV-6951-01 15 52058689 52058689 A T TMOD2 Missense_Mutation p.E17D 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-CV-6951-01 15 52697571 52697571 T A MYO5A Missense_Mutation p.Q322H 0.27 deleterious(0) probably_damaging(1) TCGA-CV-6951-01 15 64067261 64067261 G C HERC1 Missense_Mutation p.L188V 0.26 possibly_damaging(0.884) TCGA-CV-6951-01 15 78640277 78640277 C T CRABP1 Silent p.G124G 0.42 TCGA-CV-6951-01 15 90119305 90119305 C T TICRR Missense_Mutation p.S163L 0.50 deleterious(0) probably_damaging(1) TCGA-CV-6951-01 15 90984777 90984777 G A IQGAP1 Missense_Mutation p.R230H 0.26 tolerated(0.2) benign(0.001) TCGA-CV-6951-01 16 3778359 3778359 T A CREBBP Missense_Mutation p.Q2230L 0.44 unknown(0) TCGA-CV-6951-01 16 70916719 70916719 C T HYDIN Silent p.Q3353Q 0.38 TCGA-CV-6951-01 16 89351103 89351103 T G ANKRD11 Missense_Mutation p.E616A 0.20 benign(0.025) TCGA-CV-6951-01 16 90128681 90128681 C G PRDM7 Intron 0.27 TCGA-CV-6951-01 17 15902870 15902870 C G TTC19 5'UTR 0.19 TCGA-CV-6951-01 17 18178288 18178288 G T TOP3A Missense_Mutation p.S945Y 0.31 tolerated(0.57) benign(0.09) TCGA-CV-6951-01 17 2282583 2282583 C T SGSM2 Intron 0.16 TCGA-CV-6951-01 17 37343809 37343809 G T CACNB1 Missense_Mutation p.P113T 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-CV-6951-01 17 37657685 37657685 A - CDK12 Frame_Shift_Del p.N868Ifs*8 0.28 TCGA-CV-6951-01 17 38933792 38933792 A T KRT27 Missense_Mutation p.C389S 0.17 tolerated(0.35) possibly_damaging(0.843) TCGA-CV-6951-01 17 73749930 73749930 C T ITGB4 Missense_Mutation p.P1398L 0.50 tolerated_low_confidence(0.06) benign(0.059) TCGA-CV-6951-01 17 7577129 7577129 A C TP53 Missense_Mutation p.F270C 0.48 deleterious(0) probably_damaging(0.998) TCGA-CV-6951-01 17 7578217 7578217 G A TP53 Missense_Mutation p.T211I 0.33 deleterious(0.02) probably_damaging(0.96) TCGA-CV-6951-01 17 77073809 77073809 C G ENGASE Silent p.L93L 0.47 TCGA-CV-6951-01 17 8131878 8131878 G A CTC1 Missense_Mutation p.R1153C 0.19 deleterious(0) probably_damaging(1) TCGA-CV-6951-01 18 21111620 21111620 C G C18orf8 Missense_Mutation p.F642L 0.25 deleterious(0.01) possibly_damaging(0.787) TCGA-CV-6951-01 18 43204609 43204609 G C SLC14A2 5'UTR 0.22 TCGA-CV-6951-01 18 43698200 43698200 C A HAUS1 Missense_Mutation p.L87I 0.19 deleterious(0.01) probably_damaging(0.948) TCGA-CV-6951-01 18 63547973 63547973 C - CDH7 Frame_Shift_Del p.A734Vfs*15 0.16 TCGA-CV-6951-01 19 14520565 14520565 C G DDX39A Missense_Mutation p.E285Q 0.31 tolerated(0.07) benign(0.018) TCGA-CV-6951-01 19 16268177 16268177 C T HSH2D 3'Flank 0.36 TCGA-CV-6951-01 19 2110868 2110868 C G AP3D1 Missense_Mutation p.E1005Q 0.14 tolerated(0.45) benign(0.001) TCGA-CV-6951-01 19 38943488 38943488 G A RYR1 Missense_Mutation p.R425Q 0.27 possibly_damaging(0.49) TCGA-CV-6951-01 19 48917263 48917263 C T GRIN2D Silent p.I367I 0.14 TCGA-CV-6951-01 19 53644215 53644215 C A ZNF347 Missense_Mutation p.E623D 0.49 deleterious(0) benign(0.094) TCGA-CV-6951-01 19 56114117 56114117 C T ZNF524 Silent p.L213L 0.68 TCGA-CV-6951-01 19 58118331 58118331 C T ZNF530 Nonsense_Mutation p.R480* 0.51 TCGA-CV-6951-01 1 120927052 120927052 A G FCGR1B 3'UTR 0.41 TCGA-CV-6951-01 1 154062033 154062033 A C NUP210L Missense_Mutation p.L742R 0.17 tolerated(0.15) probably_damaging(0.999) TCGA-CV-6951-01 1 154961343 154961343 G A FLAD1 Intron 0.42 TCGA-CV-6951-01 1 158595954 158595954 G T SPTA1 Silent p.L1964L 0.11 TCGA-CV-6951-01 1 16358754 16358754 G A CLCNKA Missense_Mutation p.A605T 0.52 tolerated(0.4) benign(0.001) TCGA-CV-6951-01 1 179437833 179437833 A T AXDND1 Intron 0.29 TCGA-CV-6951-01 1 182026706 182026706 G A ZNF648 Missense_Mutation p.A147V 0.17 tolerated(0.13) benign(0.005) TCGA-CV-6951-01 1 186057074 186057074 C G HMCN1 Missense_Mutation p.T3125R 0.10 probably_damaging(0.998) TCGA-CV-6951-01 1 196928195 196928195 T G CFHR2 Missense_Mutation p.S266R 0.25 tolerated(0.37) benign(0.153) TCGA-CV-6951-01 1 201759817 201759817 C A NAV1 Missense_Mutation p.Q1082K 0.16 deleterious(0.01) probably_damaging(0.917) TCGA-CV-6951-01 1 203036878 203036878 G A PPFIA4 Missense_Mutation p.E530K 0.31 deleterious(0.02) possibly_damaging(0.57) TCGA-CV-6951-01 1 238048742 238048742 G A ZP4 Missense_Mutation p.T370I 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-6951-01 1 247264162 247264162 C G ZNF669 Missense_Mutation p.E303D 0.12 tolerated(0.07) probably_damaging(0.943) TCGA-CV-6951-01 1 248637569 248637569 G A OR2T3 Silent p.L306L 0.11 TCGA-CV-6951-01 1 249151487 249151487 G C ZNF692 Missense_Mutation p.H146D 0.43 tolerated(0.65) benign(0.021) TCGA-CV-6951-01 1 27686819 27686819 G A MAP3K6 Missense_Mutation p.R699C 0.18 deleterious(0.02) possibly_damaging(0.849) TCGA-CV-6951-01 1 33116074 33116074 C T ZBTB8OS Silent p.A31A 0.33 TCGA-CV-6951-01 1 35452858 35452858 T C ZMYM6 Silent p.L1275L 0.22 TCGA-CV-6951-01 1 55145695 55145695 C T MROH7 Silent p.L786L 0.46 TCGA-CV-6951-01 1 67516168 67516168 G A SLC35D1 Silent p.L138L 0.32 TCGA-CV-6951-01 1 91406595 91406595 C T ZNF644 Missense_Mutation p.E106K 0.16 tolerated(0.08) probably_damaging(0.995) TCGA-CV-6951-01 20 32217677 32217677 C T CBFA2T2 Silent p.V404V 0.45 TCGA-CV-6951-01 20 3726199 3726199 G A HSPA12B Silent p.E171E 0.19 TCGA-CV-6951-01 20 40757407 40757407 G A PTPRT Missense_Mutation p.A945V 0.08 deleterious(0) probably_damaging(0.997) TCGA-CV-6951-01 22 24034794 24034794 T C RGL4 Intron 0.14 TCGA-CV-6951-01 22 36712573 36712573 C T MYH9 Missense_Mutation p.E457K 0.29 probably_damaging(1) TCGA-CV-6951-01 2 116572538 116572538 G - DPP10 Frame_Shift_Del p.V628* 0.10 TCGA-CV-6951-01 2 11727605 11727605 G A GREB1 Intron 0.35 TCGA-CV-6951-01 2 128712891 128712891 C A SAP130 Silent p.V723V 0.23 TCGA-CV-6951-01 2 139316665 139316665 G T SPOPL Missense_Mutation p.R185L 0.33 tolerated(0.3) benign(0.02) TCGA-CV-6951-01 2 164466892 164466892 C G FIGN Missense_Mutation p.D484H 0.11 tolerated(0.19) probably_damaging(0.997) TCGA-CV-6951-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.20 deleterious(0) probably_damaging(1) TCGA-CV-6951-01 2 189434754 189434754 G T GULP1 Splice_Site p.X173_splice 0.21 TCGA-CV-6951-01 2 189867029 189867029 G C COL3A1 Missense_Mutation p.E799D 0.20 unknown(0) TCGA-CV-6951-01 2 216191665 216191665 C A ATIC Missense_Mutation p.Q218K 0.23 tolerated(0.12) possibly_damaging(0.655) TCGA-CV-6951-01 2 27804296 27804296 G A C2orf16 Silent p.E1619E 0.30 TCGA-CV-6951-01 2 27804510 27804510 G T C2orf16 Nonsense_Mutation p.E1691* 0.21 TCGA-CV-6951-01 2 68365916 68365916 G C WDR92 Silent p.L197L 0.21 TCGA-CV-6951-01 2 68615548 68615548 T G PLEK Missense_Mutation p.N229K 0.49 tolerated(0.31) possibly_damaging(0.557) TCGA-CV-6951-01 2 79253167 79253167 C T REG3G 5'UTR 0.14 TCGA-CV-6951-01 2 9661434 9661434 G A ADAM17 Silent p.L285L 0.22 TCGA-CV-6951-01 3 121138003 121138003 C T STXBP5L 3'UTR 0.17 TCGA-CV-6951-01 3 122340298 122340298 G T PARP15 Missense_Mutation p.Q357H 0.64 deleterious(0) possibly_damaging(0.838) TCGA-CV-6951-01 3 138023770 138023770 G A NME9 Nonsense_Mutation p.R185* 0.15 TCGA-CV-6951-01 3 161221279 161221279 G A OTOL1 Missense_Mutation p.R328Q 0.13 deleterious(0) probably_damaging(0.993) TCGA-CV-6951-01 3 46937299 46937299 G T PTH1R Missense_Mutation p.G85W 0.24 deleterious(0.02) benign(0.145) TCGA-CV-6951-01 3 49466588 49466588 C T NICN1 Missense_Mutation p.G29S 0.31 deleterious(0) probably_damaging(0.962) TCGA-CV-6951-01 3 56675420 56675420 G C FAM208A Missense_Mutation p.S859C 0.21 deleterious(0.04) benign(0.069) TCGA-CV-6951-01 4 139965958 139965958 G C CCRN4L Missense_Mutation p.R209T 0.17 tolerated(0.69) benign(0.055) TCGA-CV-6951-01 4 164394488 164394488 T A TKTL2 Silent p.A133A 0.24 TCGA-CV-6951-01 4 76811247 76811247 C T PPEF2 Missense_Mutation p.A94T 0.47 tolerated(0.47) benign(0.022) TCGA-CV-6951-01 4 81187884 81187884 G A FGF5 5'UTR 0.35 TCGA-CV-6951-01 4 96761704 96761704 G C PDHA2 Missense_Mutation p.E135Q 0.51 deleterious(0) probably_damaging(0.982) TCGA-CV-6951-01 5 140307419 140307419 C T PCDHAC1 Silent p.D314D 0.29 TCGA-CV-6951-01 5 179226007 179226007 C T MGAT4B Missense_Mutation p.E437K 0.41 tolerated(0.12) benign(0.194) TCGA-CV-6951-01 5 40716573 40716573 G A TTC33 Missense_Mutation p.H155Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-6951-01 5 79929781 79929781 G T DHFR Missense_Mutation p.L134I 0.29 tolerated(0.29) possibly_damaging(0.535) TCGA-CV-6951-01 5 80667608 80667608 G C ACOT12 Missense_Mutation p.I73M 0.28 deleterious(0) probably_damaging(1) TCGA-CV-6951-01 6 121563420 121563420 A T TBC1D32 Missense_Mutation p.L695Q 0.24 deleterious(0) benign(0.169) TCGA-CV-6951-01 6 129475657 129475657 T A LAMA2 Missense_Mutation p.N345K 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-6951-01 6 135371740 135371740 T C HBS1L Missense_Mutation p.Y30C 0.55 deleterious(0.02) benign(0.151) TCGA-CV-6951-01 6 160666488 160666488 C T SLC22A2 Missense_Mutation p.M349I 0.21 deleterious(0.05) benign(0) TCGA-CV-6951-01 6 26217479 26217479 G A HIST1H2AE Missense_Mutation p.E93K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-CV-6951-01 6 28268867 28268867 C G PGBD1 Silent p.L412L 0.17 TCGA-CV-6951-01 6 37344797 37344797 A G RNF8 Silent p.E408E 0.41 TCGA-CV-6951-01 6 50681694 50681694 G T TFAP2D 5'UTR 0.22 TCGA-CV-6951-01 6 94120657 94120657 A T EPHA7 Missense_Mutation p.Y132N 0.41 tolerated(0.55) benign(0.057) TCGA-CV-6951-01 7 100420076 100420076 C T EPHB4 Missense_Mutation p.E209K 0.26 deleterious(0.02) benign(0.206) TCGA-CV-6951-01 7 113519867 113519867 A G PPP1R3A Missense_Mutation p.L427P 0.58 tolerated(0.23) benign(0.071) TCGA-CV-6951-01 7 117450885 117450885 G A CTTNBP2 Silent p.A116A 0.17 TCGA-CV-6951-01 7 1526591 1526591 G A INTS1 Silent p.G931G 0.20 TCGA-CV-6951-01 7 15725704 15725704 G T MEOX2 Silent p.L108L 0.77 TCGA-CV-6951-01 7 36895309 36895309 C T ELMO1 Missense_Mutation p.M677I 0.21 deleterious(0) benign(0.164) TCGA-CV-6951-01 7 57188597 57188597 A G ZNF479 Silent p.D175D 0.28 TCGA-CV-6951-01 7 77256506 77256506 A G PTPN12 Missense_Mutation p.N504D 0.13 tolerated_low_confidence(0.22) benign(0) TCGA-CV-6951-01 7 88963135 88963135 A C ZNF804B Missense_Mutation p.E280A 0.22 tolerated(0.71) benign(0.002) TCGA-CV-6951-01 7 92761451 92761451 C T SAMD9L Silent p.L1278L 0.20 TCGA-CV-6951-01 7 94024311 94024311 G A COL1A2 5'UTR 0.56 TCGA-CV-6951-01 8 109498872 109498872 G C EMC2 3'UTR 0.25 TCGA-CV-6951-01 8 133898695 133898695 G T TG Nonsense_Mutation p.E360* 0.33 TCGA-CV-6951-01 8 144681367 144681367 G A TIGD5 Missense_Mutation p.E432K 0.25 deleterious(0.01) probably_damaging(0.97) TCGA-CV-6951-01 8 144801638 144801638 C T MAPK15 Missense_Mutation p.P236L 0.46 tolerated(0.43) benign(0.049) TCGA-CV-6951-01 8 144942354 144942354 T C EPPK1 Missense_Mutation p.I1690V 0.11 benign(0.051) TCGA-CV-6951-01 8 145012852 145012852 C T PLEC Missense_Mutation p.D178N 0.22 unknown(0) TCGA-CV-6951-01 8 145624248 145624248 C T CPSF1 Missense_Mutation p.R520Q 0.53 deleterious(0.04) probably_damaging(0.994) TCGA-CV-6951-01 8 95944333 95944333 G A TP53INP1 Intron 0.29 TCGA-CV-6951-01 9 101980370 101980370 G A ALG2 Missense_Mutation p.P366L 0.30 deleterious(0.01) possibly_damaging(0.815) TCGA-CV-6951-01 9 102731043 102731043 A G STX17 3'UTR 0.67 TCGA-CV-6951-01 9 111903702 111903702 C T FRRS1L Silent p.V261V 0.71 TCGA-CV-6951-01 9 130536273 130536273 C T SH2D3C Missense_Mutation p.E171K 0.69 tolerated(0.18) benign(0.002) TCGA-CV-6951-01 9 131897100 131897100 C T PPP2R4 Missense_Mutation p.L163F 0.80 deleterious(0) probably_damaging(0.948) TCGA-CV-6951-01 9 15472704 15472705 - T PSIP1 Frame_Shift_Ins p.N301Kfs*8 0.41 TCGA-CV-6951-01 9 21970919 21970919 C - CDKN2A Frame_Shift_Del p.A147Pfs*8 0.44 TCGA-CV-6951-01 9 33034296 33034296 G T DNAJA1 Silent p.V242V 0.33 TCGA-CV-6951-01 9 72338400 72338400 C G PTAR1 Missense_Mutation p.L263F 0.26 tolerated(0.17) benign(0.024) TCGA-CV-6951-01 9 73167793 73167793 C T TRPM3 Missense_Mutation p.E1169K 0.28 tolerated(0.27) benign(0.266) TCGA-CV-6951-01 9 98239882 98239882 C A PTCH1 Nonsense_Mutation p.G484* 0.82 TCGA-CV-6951-01 X 140985505 140985505 G T MAGEC3 Missense_Mutation p.A607S 0.77 deleterious(0.01) probably_damaging(0.967) TCGA-CV-6951-01 X 48762651 48762651 C T SLC35A2 Missense_Mutation p.V179I 0.64 tolerated(0.09) possibly_damaging(0.692) TCGA-CV-6951-01 X 70618519 70618519 G C TAF1 Missense_Mutation p.E1260Q 0.91 tolerated(0.08) probably_damaging(0.987) TCGA-CV-6952-01 10 103531217 103531217 C T FGF8 Intron 0.27 TCGA-CV-6952-01 10 124610029 124610030 - A FAM24B Frame_Shift_Ins p.M1? 0.22 TCGA-CV-6952-01 10 124758050 124758050 C G IKZF5 Missense_Mutation p.G31A 0.24 tolerated(0.23) probably_damaging(0.992) TCGA-CV-6952-01 10 38301244 38301244 C G ZNF33A 5'UTR 0.24 TCGA-CV-6952-01 10 59976032 59976032 G A IPMK Silent p.P140P 0.19 TCGA-CV-6952-01 10 7214579 7214579 C T SFMBT2 Missense_Mutation p.G677R 0.30 deleterious(0.03) benign(0.091) TCGA-CV-6952-01 10 72631612 72631612 A G SGPL1 Missense_Mutation p.I310V 0.21 tolerated(0.08) benign(0.107) TCGA-CV-6952-01 10 79576322 79576322 G A DLG5 Missense_Mutation p.R1338W 0.13 deleterious(0.04) benign(0) TCGA-CV-6952-01 10 93740247 93740247 A T BTAF1 Missense_Mutation p.M563L 0.19 tolerated(0.07) benign(0.003) TCGA-CV-6952-01 10 95399902 95399902 G A PDE6C Missense_Mutation p.G520R 0.29 deleterious(0.01) benign(0.208) TCGA-CV-6952-01 11 10215531 10215531 G A SBF2 Missense_Mutation p.S20L 0.17 deleterious(0.01) benign(0.082) TCGA-CV-6952-01 11 118368762 118368763 - T KMT2A Frame_Shift_Ins p.M1926Ifs*12 0.19 TCGA-CV-6952-01 11 118375349 118375349 C A KMT2A Silent p.V2914V 0.25 TCGA-CV-6952-01 11 120998603 120998603 C T TECTA Silent p.L639L 0.24 TCGA-CV-6952-01 11 121348887 121348887 G A SORL1 Missense_Mutation p.G155S 0.22 tolerated(0.86) benign(0.015) TCGA-CV-6952-01 11 20136232 20136232 C T NAV2 Missense_Mutation p.P2411L 0.34 deleterious(0.05) probably_damaging(0.997) TCGA-CV-6952-01 11 20136233 20136233 C T NAV2 Silent p.P2411P 0.34 TCGA-CV-6952-01 11 209939 209939 T C RIC8A Missense_Mutation p.M222T 0.17 deleterious(0.05) probably_damaging(0.962) TCGA-CV-6952-01 11 36654876 36654876 C T C11orf74 Missense_Mutation p.S60L 0.18 tolerated(0.57) benign(0.258) TCGA-CV-6952-01 11 5173296 5173296 G A OR52A1 Nonsense_Mutation p.Q102* 0.27 TCGA-CV-6952-01 11 62285788 62285788 T C AHNAK Silent p.G5367G 0.22 TCGA-CV-6952-01 11 65266549 65266549 T C MALAT1 RNA 0.23 TCGA-CV-6952-01 11 70263146 70263146 A G CTTN Missense_Mutation p.Y162C 0.22 deleterious(0) probably_damaging(0.968) TCGA-CV-6952-01 11 7064378 7064378 C A NLRP14 Missense_Mutation p.A374D 0.24 tolerated(0.07) benign(0.232) TCGA-CV-6952-01 11 72013356 72013356 G A CLPB Nonsense_Mutation p.R417* 0.13 TCGA-CV-6952-01 11 73803532 73803532 C T C2CD3 Missense_Mutation p.G1149E 0.15 tolerated(0.32) possibly_damaging(0.559) TCGA-CV-6952-01 11 76063019 76063019 T A PRKRIR Missense_Mutation p.H392L 0.19 tolerated(0.33) benign(0.017) TCGA-CV-6952-01 11 83874509 83874509 C T DLG2 Missense_Mutation p.E207K 0.19 deleterious(0.04) possibly_damaging(0.908) TCGA-CV-6952-01 11 89944413 89944413 G C CHORDC1 Missense_Mutation p.L135V 0.21 tolerated(0.06) benign(0.022) TCGA-CV-6952-01 12 123078827 123078827 C G KNTC1 Missense_Mutation p.S1417C 0.29 deleterious(0) probably_damaging(0.99) TCGA-CV-6952-01 12 123355461 123355461 A C VPS37B Missense_Mutation p.Y87D 0.24 tolerated(0.09) probably_damaging(0.951) TCGA-CV-6952-01 12 130921797 130921797 C T RIMBP2 Missense_Mutation p.V549M 0.50 deleterious(0.01) probably_damaging(0.939) TCGA-CV-6952-01 12 130934748 130934748 T C RIMBP2 Missense_Mutation p.Y176C 0.33 deleterious(0.03) benign(0.366) TCGA-CV-6952-01 12 46320591 46320591 G A SCAF11 Missense_Mutation p.R965W 0.22 tolerated(0.06) benign(0.082) TCGA-CV-6952-01 12 52380658 52380658 T G ACVR1B Missense_Mutation p.F439C 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-CV-6952-01 12 53823690 53823690 C T AMHR2 Nonsense_Mutation p.R406* 0.23 TCGA-CV-6952-01 12 66639014 66639014 G A IRAK3 Missense_Mutation p.R429Q 0.27 deleterious(0) probably_damaging(0.926) TCGA-CV-6952-01 12 93100819 93100819 C T C12orf74 Nonsense_Mutation p.Q138* 0.19 TCGA-CV-6952-01 13 109699324 109699324 C G MYO16 Missense_Mutation p.L931V 0.24 tolerated(0.4) benign(0.181) TCGA-CV-6952-01 13 42783488 42783488 A G DGKH Missense_Mutation p.I913V 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-CV-6952-01 13 52742289 52742303 CCCTCTGGTAGTTAT - MRPS31P5 RNA 0.20 TCGA-CV-6952-01 13 86370532 86370532 C T SLITRK6 Missense_Mutation p.E38K 0.07 deleterious(0.04) benign(0.059) TCGA-CV-6952-01 14 100835536 100835536 C T WARS 5'UTR 0.25 TCGA-CV-6952-01 14 104028278 104028278 T C BAG5 Missense_Mutation p.I23V 0.09 tolerated_low_confidence(1) benign(0) TCGA-CV-6952-01 14 47566080 47566080 T - MDGA2 Frame_Shift_Del p.K391Sfs*7 0.17 TCGA-CV-6952-01 14 88945670 88945670 G C PTPN21 Missense_Mutation p.S702W 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-6952-01 14 91700861 91700861 G C GPR68 Missense_Mutation p.I178M 0.13 tolerated(1) benign(0.016) TCGA-CV-6952-01 15 100269526 100269526 G A LYSMD4 Silent p.V232V 0.24 TCGA-CV-6952-01 15 40951562 40951562 G A CASC5 Missense_Mutation p.A2273T 0.33 tolerated(0.37) benign(0.089) TCGA-CV-6952-01 15 43991391 43991391 A G CKMT1A 3'UTR 0.28 TCGA-CV-6952-01 15 50769638 50769638 C G USP8 Missense_Mutation p.S387C 0.36 deleterious(0.04) possibly_damaging(0.514) TCGA-CV-6952-01 15 91835756 91835756 G C SV2B Missense_Mutation p.E676Q 0.26 tolerated(0.07) probably_damaging(0.99) TCGA-CV-6952-01 16 1370539 1370539 C T UBE2I Intron 0.09 TCGA-CV-6952-01 16 68893913 68893913 G C TANGO6 Missense_Mutation p.R74T 0.11 deleterious(0.04) possibly_damaging(0.717) TCGA-CV-6952-01 16 75204123 75204123 G A ZFP1 Missense_Mutation p.R372Q 0.11 tolerated(0.07) probably_damaging(0.999) TCGA-CV-6952-01 16 75263414 75263414 C T BCAR1 Missense_Mutation p.A916T 0.25 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-CV-6952-01 16 75513142 75513142 T C CHST6 Silent p.L195L 0.20 TCGA-CV-6952-01 16 84104310 84104310 T C MBTPS1 Silent p.L555L 0.17 TCGA-CV-6952-01 17 15619477 15619477 G T ZNF286A Missense_Mutation p.V147F 0.46 tolerated(0.71) benign(0.004) TCGA-CV-6952-01 17 38433351 38433351 G C WIPF2 Missense_Mutation p.K399N 0.19 deleterious(0) probably_damaging(0.994) TCGA-CV-6952-01 17 39845245 39845245 C T EIF1 5'UTR 0.36 TCGA-CV-6952-01 17 42992693 42992693 C T GFAP Silent p.L54L 0.27 TCGA-CV-6952-01 17 46862375 46862375 G A TTLL6 Silent p.L650L 0.37 TCGA-CV-6952-01 17 4994843 4994843 C T ZFP3 Missense_Mutation p.S15F 0.50 tolerated(0.12) benign(0.001) TCGA-CV-6952-01 17 74078133 74078133 G A ZACN Intron 0.30 TCGA-CV-6952-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.47 deleterious(0) probably_damaging(0.983) TCGA-CV-6952-01 17 79410170 79410170 G A RP11-1055B8.7 Missense_Mutation p.E599K 0.27 probably_damaging(0.991) TCGA-CV-6952-01 17 914076 914077 - TCA ABR In_Frame_Ins p.L709_S710insM 0.51 TCGA-CV-6952-01 18 14780007 14780007 C G ANKRD30B Missense_Mutation p.S490C 0.23 deleterious(0) probably_damaging(0.965) TCGA-CV-6952-01 18 29055986 29055986 C T DSG3 Silent p.S921S 0.23 TCGA-CV-6952-01 18 5397422 5397422 T C EPB41L3 Missense_Mutation p.M826V 0.28 tolerated(0.56) benign(0) TCGA-CV-6952-01 19 19112448 19112448 G A SUGP2 Missense_Mutation p.R989W 0.15 deleterious(0) probably_damaging(0.915) TCGA-CV-6952-01 19 37368294 37368294 G A ZNF345 Missense_Mutation p.A188T 0.34 tolerated(0.39) benign(0.103) TCGA-CV-6952-01 19 39336360 39336360 T C HNRNPL Missense_Mutation p.I214V 0.22 tolerated(0.37) probably_damaging(0.97) TCGA-CV-6952-01 19 44536636 44536636 C A ZNF222 Nonsense_Mutation p.S310* 0.25 TCGA-CV-6952-01 19 46828852 46828852 G A HIF3A Missense_Mutation p.G466R 0.25 tolerated(0.48) benign(0.003) TCGA-CV-6952-01 19 48830823 48830823 G A EMP3 Missense_Mutation p.D42N 0.18 tolerated(0.6) probably_damaging(0.999) TCGA-CV-6952-01 19 49813315 49813315 T A SLC6A16 Missense_Mutation p.M228L 0.31 deleterious(0.02) benign(0.006) TCGA-CV-6952-01 19 52619980 52619980 G T ZNF616 Nonsense_Mutation p.S146* 0.22 TCGA-CV-6952-01 19 56388492 56388492 C T NLRP4 Missense_Mutation p.R886W 0.25 deleterious(0.04) benign(0.195) TCGA-CV-6952-01 19 57325894 57325894 T G PEG3 Missense_Mutation p.N1306H 0.25 tolerated(0.05) possibly_damaging(0.492) TCGA-CV-6952-01 1 100591488 100591488 T C SASS6 Missense_Mutation p.I26V 0.27 tolerated(1) benign(0.001) TCGA-CV-6952-01 1 108116684 108116684 T A VAV3 Silent p.G829G 0.19 TCGA-CV-6952-01 1 113657294 113657294 C T LRIG2 Missense_Mutation p.R776C 0.19 deleterious(0.01) benign(0.011) TCGA-CV-6952-01 1 114499830 114499830 C T HIPK1 Silent p.F559F 0.21 TCGA-CV-6952-01 1 117158883 117158883 G A IGSF3 Silent p.P80P 0.12 TCGA-CV-6952-01 1 146739091 146739091 T G CHD1L Missense_Mutation p.F301C 0.24 deleterious(0) probably_damaging(0.997) TCGA-CV-6952-01 1 152188024 152188024 C T HRNR Silent p.S2027S 0.12 TCGA-CV-6952-01 1 159558171 159558171 G C APCS Silent p.V115V 0.18 TCGA-CV-6952-01 1 160850996 160850996 G T ITLN1 Missense_Mutation p.T171K 0.23 deleterious(0) probably_damaging(1) TCGA-CV-6952-01 1 162343682 162343683 TA - C1orf111 3'UTR 0.19 TCGA-CV-6952-01 1 163325191 163325191 G T NUF2 Missense_Mutation p.D443Y 0.26 deleterious(0.02) benign(0.229) TCGA-CV-6952-01 1 17907072 17907072 C T ARHGEF10L 5'UTR 0.24 TCGA-CV-6952-01 1 203821425 203821425 A G ZC3H11A Missense_Mutation p.I777M 0.29 tolerated(0.12) benign(0.187) TCGA-CV-6952-01 1 220804398 220804398 A T MARK1 Missense_Mutation p.M311L 0.24 deleterious(0.01) benign(0.096) TCGA-CV-6952-01 1 234596074 234596074 G T TARBP1 Missense_Mutation p.L490I 0.26 tolerated(0.17) benign(0.037) TCGA-CV-6952-01 1 248004351 248004351 G T OR11L1 Missense_Mutation p.P283Q 0.21 deleterious(0) probably_damaging(0.994) TCGA-CV-6952-01 1 248004352 248004352 G T OR11L1 Missense_Mutation p.P283T 0.21 deleterious(0) probably_damaging(0.979) TCGA-CV-6952-01 1 248309150 248309150 G A OR2M5 Missense_Mutation p.R234H 0.29 tolerated(0.11) benign(0.013) TCGA-CV-6952-01 1 44878151 44878151 G A RNF220 Missense_Mutation p.D128N 0.20 deleterious(0.02) benign(0.227) TCGA-CV-6952-01 1 53158471 53158471 T C COA7 Missense_Mutation p.K59E 0.23 deleterious(0.01) possibly_damaging(0.521) TCGA-CV-6952-01 1 60309235 60309235 A G HOOK1 Silent p.Q251Q 0.32 TCGA-CV-6952-01 1 85547058 85547058 C A WDR63 Missense_Mutation p.A82D 0.21 deleterious(0) probably_damaging(0.96) TCGA-CV-6952-01 20 2844895 2844895 C T VPS16 Missense_Mutation p.A561V 0.25 deleterious(0) possibly_damaging(0.817) TCGA-CV-6952-01 21 47851581 47851581 C T PCNT Nonsense_Mutation p.Q2735* 0.33 TCGA-CV-6952-01 22 24432587 24432587 A G CABIN1 Silent p.E18E 0.30 TCGA-CV-6952-01 22 41257490 41257490 G C DNAJB7 Missense_Mutation p.S170C 0.18 deleterious(0.01) probably_damaging(0.915) TCGA-CV-6952-01 22 46658432 46658432 G A PKDREJ Missense_Mutation p.S263F 0.12 deleterious(0.04) probably_damaging(0.931) TCGA-CV-6952-01 22 46658434 46658434 G A PKDREJ Silent p.F262F 0.11 TCGA-CV-6952-01 2 128044295 128044295 T C ERCC3 Silent p.E442E 0.21 TCGA-CV-6952-01 2 141081531 141081531 C A LRP1B Nonsense_Mutation p.E4149* 0.26 TCGA-CV-6952-01 2 141625820 141625820 C G LRP1B Missense_Mutation p.W1394C 0.20 benign(0.074) TCGA-CV-6952-01 2 141625821 141625821 C G LRP1B Missense_Mutation p.W1394S 0.20 benign(0) TCGA-CV-6952-01 2 145156648 145156648 A G ZEB2 Silent p.N702N 0.23 TCGA-CV-6952-01 2 149526743 149526743 G A EPC2 Silent p.P388P 0.35 TCGA-CV-6952-01 2 163200683 163200683 C T GCA 5'UTR 0.24 TCGA-CV-6952-01 2 172644450 172644451 - G SLC25A12 Frame_Shift_Ins p.A532Sfs*9 0.23 TCGA-CV-6952-01 2 197738421 197738421 C G PGAP1 Silent p.L496L 0.23 TCGA-CV-6952-01 2 198285204 198285204 C T SF3B1 Silent p.K121K 0.31 TCGA-CV-6952-01 2 231944262 231944262 A G PSMD1 Silent p.E391E 0.24 TCGA-CV-6952-01 2 233925301 233925301 G A INPP5D Missense_Mutation p.R38Q 0.22 tolerated(0.09) benign(0.3) TCGA-CV-6952-01 2 239344474 239344474 A G ASB1 Missense_Mutation p.D105G 0.29 deleterious(0) probably_damaging(0.992) TCGA-CV-6952-01 2 26680819 26680819 C G OTOF 3'UTR 0.29 TCGA-CV-6952-01 2 61275957 61275957 A G PEX13 3'UTR 0.30 TCGA-CV-6952-01 2 61415337 61415337 A G USP34 Missense_Mutation p.M3514T 0.18 tolerated_low_confidence(0.39) benign(0) TCGA-CV-6952-01 2 61515972 61515973 - A USP34 Frame_Shift_Ins p.C1530Lfs*16 0.28 TCGA-CV-6952-01 3 111688671 111688671 C T PHLDB2 Silent p.L1150L 0.18 TCGA-CV-6952-01 3 141162473 141162473 A G ZBTB38 Missense_Mutation p.I415V 0.27 tolerated(0.28) benign(0.32) TCGA-CV-6952-01 3 141499575 141499575 G T GRK7 Silent p.L324L 0.21 TCGA-CV-6952-01 3 151532078 151532078 T C AADAC Missense_Mutation p.I43T 0.12 tolerated(0.57) benign(0.004) TCGA-CV-6952-01 3 164735778 164735778 A T SI Nonsense_Mutation p.L1167* 0.46 TCGA-CV-6952-01 3 170150427 170150427 C T CLDN11 Silent p.L169L 0.19 TCGA-CV-6952-01 3 172070689 172070689 G C FNDC3B Missense_Mutation p.E871Q 0.28 tolerated(0.08) benign(0.027) TCGA-CV-6952-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.16 deleterious(0.04) probably_damaging(0.96) TCGA-CV-6952-01 3 47284589 47284589 A G KIF9 Missense_Mutation p.I554T 0.27 tolerated(0.62) benign(0) TCGA-CV-6952-01 3 49042401 49042401 G A P4HTM Missense_Mutation p.G332E 0.34 tolerated(0.12) possibly_damaging(0.872) TCGA-CV-6952-01 3 49155121 49155121 G C USP19 Missense_Mutation p.F147L 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.714) TCGA-CV-6952-01 3 54596957 54596957 G T CACNA2D3 Silent p.P225P 0.13 TCGA-CV-6952-01 3 9799175 9799175 G T CAMK1 3'UTR 0.41 TCGA-CV-6952-01 4 130023943 130023943 G A C4orf33 Missense_Mutation p.E60K 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-6952-01 4 141471530 141471530 A G ELMOD2 3'UTR 0.56 TCGA-CV-6952-01 4 187525003 187525003 G C FAT1 Nonsense_Mutation p.Y3559* 0.38 TCGA-CV-6952-01 4 48496198 48496198 C T ZAR1 Silent p.C404C 0.18 TCGA-CV-6952-01 4 74007554 74007554 G C ANKRD17 Missense_Mutation p.R746G 0.18 probably_damaging(0.931) TCGA-CV-6952-01 4 76928561 76928572 CAAGATGATGCC - CXCL9 In_Frame_Del p.G11_L14del 0.14 TCGA-CV-6952-01 4 76928614 76928614 G T CXCL9 5'UTR 0.20 TCGA-CV-6952-01 4 77033553 77033553 C T ART3 Missense_Mutation p.P351S 0.22 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-CV-6952-01 4 79455676 79455676 C G FRAS1 Missense_Mutation p.Q3667E 0.27 probably_damaging(0.97) TCGA-CV-6952-01 4 86787 86787 A G Z95704.2 RNA 0.23 TCGA-CV-6952-01 5 101834543 101834543 G A SLCO6A1 Silent p.F2F 0.18 TCGA-CV-6952-01 5 130764620 130764620 C G CTC-432M15.3 Silent p.V1635V 0.22 TCGA-CV-6952-01 5 132222032 132222032 C T AFF4 Silent p.K1023K 0.30 TCGA-CV-6952-01 5 133896507 133896507 A G JADE2 Missense_Mutation p.M182V 0.24 deleterious(0) probably_damaging(0.958) TCGA-CV-6952-01 5 134190804 134190804 A G C5orf24 Missense_Mutation p.I72V 0.34 tolerated_low_confidence(0.41) benign(0.015) TCGA-CV-6952-01 5 142513667 142513667 A - ARHGAP26 Frame_Shift_Del p.K612Nfs*34 0.17 TCGA-CV-6952-01 5 167655115 167655115 A G TENM2 Missense_Mutation p.I1834V 0.38 tolerated(1) benign(0) TCGA-CV-6952-01 5 169535280 169535280 C T FOXI1 Missense_Mutation p.P268S 0.20 tolerated(0.88) benign(0.001) TCGA-CV-6952-01 5 174156729 174156729 A G MSX2 3'UTR 0.30 TCGA-CV-6952-01 5 79734575 79734575 A G ZFYVE16 Missense_Mutation p.I691V 0.29 tolerated(0.85) benign(0) TCGA-CV-6952-01 6 11105000 11105000 G A ERVFRD-1 Nonsense_Mutation p.Q182* 0.24 TCGA-CV-6952-01 6 117710592 117710592 G A ROS1 Silent p.R560R 0.23 TCGA-CV-6952-01 6 139363993 139363993 C T ABRACL Silent p.L67L 0.25 TCGA-CV-6952-01 6 146720766 146720766 A G GRM1 Missense_Mutation p.K864R 0.25 deleterious(0.02) possibly_damaging(0.765) TCGA-CV-6952-01 6 151672243 151672243 T C AKAP12 Missense_Mutation p.I906T 0.26 deleterious(0.01) benign(0.053) TCGA-CV-6952-01 6 26043466 26043466 G A HIST1H2BB 3'UTR 0.44 TCGA-CV-6952-01 6 26509146 26509146 C G BTN1A1 Missense_Mutation p.S442C 0.20 deleterious(0) probably_damaging(0.932) TCGA-CV-6952-01 6 31752260 31752260 G A VARS Missense_Mutation p.T496I 0.27 deleterious(0.04) possibly_damaging(0.529) TCGA-CV-6952-01 6 43096755 43096755 C T PTK7 Silent p.S48S 0.18 TCGA-CV-6952-01 6 89650812 89650812 G C RNGTT Nonsense_Mutation p.S51* 0.19 TCGA-CV-6952-01 7 100486561 100486563 CCC A UFSP1 Frame_Shift_Del p.G111Lfs*9 0.22 TCGA-CV-6952-01 7 106781346 106781346 G A PRKAR2B Missense_Mutation p.E179K 0.13 deleterious(0) probably_damaging(0.956) TCGA-CV-6952-01 7 135279436 135279436 G C NUP205 Missense_Mutation p.E658Q 0.29 deleterious(0.05) probably_damaging(0.934) TCGA-CV-6952-01 7 138602949 138602949 C G KIAA1549 Missense_Mutation p.E475Q 0.30 deleterious(0.03) possibly_damaging(0.844) TCGA-CV-6952-01 7 139810963 139810964 - A KDM7A Frame_Shift_Ins p.E454* 0.18 TCGA-CV-6952-01 7 20824320 20824320 G A SP8 Silent p.G372G 0.28 TCGA-CV-6952-01 7 20824321 20824321 C A SP8 Missense_Mutation p.G372V 0.27 deleterious(0) possibly_damaging(0.754) TCGA-CV-6952-01 7 39606030 39606030 C T YAE1D1 Nonsense_Mutation p.Q5* 0.36 TCGA-CV-6952-01 7 82545553 82545553 G T PCLO Missense_Mutation p.Q3917K 0.27 unknown(0) TCGA-CV-6952-01 8 100831673 100831673 C T VPS13B Silent p.P2910P 0.10 TCGA-CV-6952-01 8 110456987 110456987 G C PKHD1L1 Missense_Mutation p.R1630T 0.18 tolerated(0.4) benign(0.288) TCGA-CV-6952-01 8 114327022 114327022 C T CSMD3 Missense_Mutation p.G60E 0.18 tolerated_low_confidence(0.05) benign(0.071) TCGA-CV-6952-01 8 121475947 121475947 T C MTBP Silent p.S331S 0.14 TCGA-CV-6952-01 8 127569307 127569307 C A FAM84B Nonsense_Mutation p.E110* 0.50 TCGA-CV-6952-01 8 144993792 144993792 C T PLEC Silent p.V3536V 0.26 TCGA-CV-6952-01 8 1497609 1497609 G A DLGAP2 Silent p.A250A 0.34 TCGA-CV-6952-01 8 17142026 17142026 A T VPS37A Silent p.A338A 0.57 TCGA-CV-6952-01 8 23709899 23709899 T A STC1 Splice_Site p.X40_splice 0.36 TCGA-CV-6952-01 8 77768159 77768159 G A ZFHX4 Missense_Mutation p.G3001E 0.23 probably_damaging(0.983) TCGA-CV-6952-01 8 95894373 95894373 T C CCNE2 Missense_Mutation p.Y363C 0.22 tolerated(0.12) probably_damaging(0.988) TCGA-CV-6952-01 9 104433149 104433149 C G GRIN3A Missense_Mutation p.L515F 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-CV-6952-01 9 105767470 105767470 A G CYLC2 Missense_Mutation p.K186R 0.28 deleterious(0.02) unknown(0) TCGA-CV-6952-01 9 131019276 131019276 A G GOLGA2 3'UTR 0.58 TCGA-CV-6952-01 9 136582547 136582547 C A SARDH Missense_Mutation p.D351Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-CV-6952-01 9 19516220 19516220 G C SLC24A2 Silent p.L639L 0.13 TCGA-CV-6952-01 9 88961250 88961250 C G ZCCHC6 Missense_Mutation p.E222D 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-CV-6952-01 9 98775038 98775038 C T ERCC6L2 Silent p.D374D 0.20 TCGA-CV-6952-01 X 100604788 100604788 G T BTK 3'UTR 0.35 TCGA-CV-6952-01 X 100604789 100604789 C T BTK 3'UTR 0.38 TCGA-CV-6952-01 X 102586386 102586386 A T TCEAL7 Missense_Mutation p.R19W 0.27 tolerated(0.09) benign(0.012) TCGA-CV-6952-01 X 107301344 107301344 C G VSIG1 Missense_Mutation p.I42M 0.23 tolerated(0.09) benign(0.139) TCGA-CV-6952-01 X 114238663 114238663 C T IL13RA2 Missense_Mutation p.E375K 0.28 deleterious_low_confidence(0) benign(0.01) TCGA-CV-6952-01 X 130415220 130415220 T G IGSF1 Silent p.R540R 0.27 TCGA-CV-6952-01 X 135098865 135098865 T - SLC9A6 Frame_Shift_Del p.L433Rfs*14 0.22 TCGA-CV-6952-01 X 13769430 13769430 A G OFD1 Missense_Mutation p.Q333R 0.31 deleterious(0.01) possibly_damaging(0.466) TCGA-CV-6952-01 X 138686866 138686866 T A MCF2 Nonsense_Mutation p.R649* 0.33 TCGA-CV-6952-01 X 153227686 153227686 T C HCFC1 Missense_Mutation p.T262A 0.09 tolerated(0.11) probably_damaging(0.991) TCGA-CV-6952-01 X 23700515 23700515 G A PRDX4 Missense_Mutation p.G201D 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6952-01 X 37027222 37027222 C T FAM47C Missense_Mutation p.R247C 0.20 tolerated(0.34) benign(0.003) TCGA-CV-6952-01 X 47002066 47002066 G A NDUFB11 Silent p.V95V 0.30 TCGA-CV-6952-01 X 48665100 48665100 A T HDAC6 Missense_Mutation p.M207L 0.28 tolerated(0.42) benign(0.071) TCGA-CV-6952-01 X 6069124 6069124 A C NLGN4X Missense_Mutation p.F128L 0.20 tolerated(0.16) probably_damaging(0.98) TCGA-CV-6952-01 X 65242022 65242022 G C VSIG4 3'UTR 0.14 TCGA-CV-6952-01 X 65392280 65392280 A T HEPH Missense_Mutation p.D138V 0.22 tolerated(0.09) benign(0.016) TCGA-CV-6952-01 X 65393633 65393633 C T HEPH Silent p.T259T 0.28 TCGA-CV-6952-01 X 69460187 69460187 A G AWAT1 3'UTR 0.20 TCGA-CV-6952-01 X 70612527 70612527 T A TAF1 Missense_Mutation p.F984I 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-CV-6952-01 X 78427029 78427029 G C GPR174 Missense_Mutation p.R175S 0.22 tolerated(0.08) benign(0.16) TCGA-CV-6952-01 X 79283536 79283536 T C TBX22 Missense_Mutation p.F304L 0.18 tolerated(1) benign(0) TCGA-CV-6952-01 X 83724401 83724401 T C HDX Missense_Mutation p.I110M 0.24 deleterious(0) benign(0.245) TCGA-CV-6952-01 X 9652149 9652149 C T TBL1X Missense_Mutation p.T93M 0.21 deleterious(0.01) possibly_damaging(0.696) TCGA-CV-6953-01 10 33211200 33211200 G C ITGB1 Missense_Mutation p.I371M 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-6953-01 10 43090020 43090020 A T ZNF33B Missense_Mutation p.F126L 0.14 tolerated(0.22) benign(0.003) TCGA-CV-6953-01 10 61005100 61005100 G T PHYHIPL Nonsense_Mutation p.E294* 0.27 TCGA-CV-6953-01 10 73115916 73115916 C T SLC29A3 Missense_Mutation p.A230V 0.19 deleterious(0) probably_damaging(0.933) TCGA-CV-6953-01 11 101832944 101832944 G T KIAA1377 Missense_Mutation p.R393M 0.15 deleterious(0.04) probably_damaging(0.927) TCGA-CV-6953-01 11 120291479 120291479 G A ARHGEF12 Missense_Mutation p.V73I 0.32 deleterious(0) probably_damaging(0.998) TCGA-CV-6953-01 11 124180386 124180386 G T OR8D1 Missense_Mutation p.L93I 0.20 deleterious(0) benign(0.033) TCGA-CV-6953-01 11 134253790 134253790 G A B3GAT1 Silent p.R135R 0.35 TCGA-CV-6953-01 11 35308365 35308365 C T SLC1A2 Missense_Mutation p.A409T 0.10 deleterious(0.01) probably_damaging(0.937) TCGA-CV-6953-01 11 5475541 5475541 C A OR51I2 Missense_Mutation p.L275I 0.22 tolerated(0.15) possibly_damaging(0.566) TCGA-CV-6953-01 11 55587492 55587492 C T OR5D18 Silent p.N129N 0.20 TCGA-CV-6953-01 11 59225310 59225310 G A OR4D6 Missense_Mutation p.E293K 0.27 deleterious(0.02) probably_damaging(0.99) TCGA-CV-6953-01 12 10167883 10167883 C T CLEC12B Nonsense_Mutation p.Q148* 0.18 TCGA-CV-6953-01 12 15742441 15742441 C T PTPRO Missense_Mutation p.H1155Y 0.27 deleterious(0.05) benign(0.196) TCGA-CV-6953-01 12 21981956 21981956 G A ABCC9 Missense_Mutation p.T1202M 0.16 deleterious(0.04) possibly_damaging(0.508) TCGA-CV-6953-01 12 31552693 31552693 C T DENND5B Missense_Mutation p.G988E 0.12 deleterious(0) probably_damaging(1) TCGA-CV-6953-01 12 53671305 53671305 G A ESPL1 Missense_Mutation p.E713K 0.28 deleterious(0.04) possibly_damaging(0.677) TCGA-CV-6953-01 12 54968993 54968993 C G PDE1B Missense_Mutation p.F392L 0.25 deleterious(0) possibly_damaging(0.587) TCGA-CV-6953-01 12 58143273 58143273 C T CDK4 Missense_Mutation p.G216E 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-CV-6953-01 12 6749669 6749669 C T ACRBP Missense_Mutation p.R366Q 0.24 deleterious(0) probably_damaging(0.994) TCGA-CV-6953-01 12 79685859 79685859 G T SYT1 Missense_Mutation p.E141D 0.19 tolerated(0.23) benign(0.104) TCGA-CV-6953-01 13 20325582 20325582 C A PSPC1 Missense_Mutation p.A266S 0.23 deleterious(0.04) possibly_damaging(0.513) TCGA-CV-6953-01 13 37453967 37453967 G A SMAD9 5'UTR 0.40 TCGA-CV-6953-01 13 52542595 52542595 G A ATP7B Silent p.G564G 0.14 TCGA-CV-6953-01 13 72053410 72053410 T C DACH1 Silent p.Q589Q 0.17 TCGA-CV-6953-01 14 102463450 102463450 G A DYNC1H1 Missense_Mutation p.E1215K 0.23 possibly_damaging(0.532) TCGA-CV-6953-01 14 106236201 106236201 C T IGHG3 Missense_Mutation p.E202K 0.24 tolerated(0.05) benign(0.076) TCGA-CV-6953-01 14 23886750 23886750 C T MYH7 Missense_Mutation p.A1439T 0.15 deleterious(0.02) possibly_damaging(0.826) TCGA-CV-6953-01 14 30135410 30135410 G A PRKD1 Silent p.S136S 0.27 TCGA-CV-6953-01 14 55818744 55818744 G C FBXO34 Missense_Mutation p.E546Q 0.25 tolerated(0.09) benign(0.193) TCGA-CV-6953-01 14 92601740 92601740 C T CPSF2 Silent p.L149L 0.18 TCGA-CV-6953-01 15 101719133 101719133 C G CHSY1 Missense_Mutation p.R290T 0.17 tolerated(0.25) benign(0.139) TCGA-CV-6953-01 15 102182562 102182565 CAAA - TM2D3 3'UTR 0.39 TCGA-CV-6953-01 15 49127202 49127202 G A SHC4 Nonsense_Mutation p.Q501* 0.24 TCGA-CV-6953-01 15 49288750 49288750 C T SECISBP2L Missense_Mutation p.E813K 0.21 tolerated(0.06) probably_damaging(0.975) TCGA-CV-6953-01 16 20651869 20651869 C T ACSM1 Missense_Mutation p.G344R 0.18 deleterious(0.01) probably_damaging(1) TCGA-CV-6953-01 16 2347779 2347779 G A ABCA3 Silent p.I680I 0.15 TCGA-CV-6953-01 16 3452371 3452371 G T ZNF174 Missense_Mutation p.D123Y 0.27 deleterious(0.01) probably_damaging(0.976) TCGA-CV-6953-01 16 50745602 50745602 G A NOD2 Missense_Mutation p.G594R 0.27 tolerated(0.09) benign(0.374) TCGA-CV-6953-01 16 53524139 53524139 G C RBL2 Missense_Mutation p.R1116T 0.27 deleterious(0) possibly_damaging(0.873) TCGA-CV-6953-01 16 84065527 84065527 C T SLC38A8 Missense_Mutation p.V193M 0.20 deleterious(0.02) possibly_damaging(0.847) TCGA-CV-6953-01 17 15215733 15215733 C A TEKT3 Missense_Mutation p.R315L 0.24 deleterious(0) probably_damaging(0.91) TCGA-CV-6953-01 17 15234646 15234646 T C TEKT3 Missense_Mutation p.N86S 0.31 tolerated(0.43) benign(0.04) TCGA-CV-6953-01 17 26900484 26900484 G C ALDOC 3'UTR 0.17 TCGA-CV-6953-01 17 3336564 3336564 G T OR1E2 Missense_Mutation p.S191Y 0.40 deleterious(0.05) benign(0.111) TCGA-CV-6953-01 17 39580482 39580482 G A KRT37 Silent p.N98N 0.22 TCGA-CV-6953-01 17 39635675 39635675 A C KRT35 Missense_Mutation p.L212R 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6953-01 17 44845801 44845801 C T WNT3 Missense_Mutation p.G318D 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-6953-01 17 74289852 74289852 C T QRICH2 Missense_Mutation p.R153H 0.24 tolerated(0.12) benign(0.011) TCGA-CV-6953-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.26 deleterious(0) probably_damaging(1) TCGA-CV-6953-01 17 8053316 8053316 C T PER1 Missense_Mutation p.A168T 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-6953-01 19 14213716 14213716 A G PRKACA Missense_Mutation p.L83P 0.21 deleterious(0) probably_damaging(0.947) TCGA-CV-6953-01 19 15806808 15806808 C T CYP4F12 Missense_Mutation p.P393L 0.32 deleterious(0) probably_damaging(0.996) TCGA-CV-6953-01 19 1796851 1796851 C T ATP8B3 Missense_Mutation p.A538T 0.22 deleterious(0) possibly_damaging(0.858) TCGA-CV-6953-01 19 22156897 22156897 G T ZNF208 Nonsense_Mutation p.Y313* 0.16 TCGA-CV-6953-01 19 33334841 33334841 C T SLC7A9 Missense_Mutation p.G332S 0.19 tolerated(0.24) benign(0.364) TCGA-CV-6953-01 19 34791871 34791871 G A KIAA0355 Missense_Mutation p.E165K 0.18 deleterious_low_confidence(0.02) benign(0.115) TCGA-CV-6953-01 19 34821154 34821154 G T KIAA0355 Missense_Mutation p.D389Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-CV-6953-01 19 39334716 39334716 C G HNRNPL Missense_Mutation p.A247P 0.23 deleterious(0) probably_damaging(1) TCGA-CV-6953-01 19 4529016 4529016 C G PLIN5 Intron 0.22 TCGA-CV-6953-01 19 50102549 50102549 G A PRR12 Silent p.K1233K 0.19 TCGA-CV-6953-01 19 57642405 57642405 G T USP29 Missense_Mutation p.G788C 0.30 deleterious(0.03) probably_damaging(1) TCGA-CV-6953-01 1 112999913 112999913 C T CTTNBP2NL Missense_Mutation p.T600I 0.11 tolerated(0.24) possibly_damaging(0.682) TCGA-CV-6953-01 1 151133270 151133270 A C LYSMD1 3'UTR 0.52 TCGA-CV-6953-01 1 154295468 154295468 G A AQP10 Silent p.L81L 0.25 TCGA-CV-6953-01 1 1720641 1720641 C T GNB1 Missense_Mutation p.R256H 0.27 deleterious(0) possibly_damaging(0.78) TCGA-CV-6953-01 1 183085957 183085957 T A LAMC1 Missense_Mutation p.C495S 0.20 deleterious(0) probably_damaging(0.997) TCGA-CV-6953-01 1 192335209 192335209 T C RGS21 Silent p.N138N 0.21 TCGA-CV-6953-01 1 213414331 213414331 A C RPS6KC1 Silent p.S504S 0.31 TCGA-CV-6953-01 1 32280968 32280968 C T SPOCD1 5'UTR 0.26 TCGA-CV-6953-01 1 37271718 37271718 G A GRIK3 Silent p.I767I 0.19 TCGA-CV-6953-01 1 38152075 38152075 C T C1orf109 Missense_Mutation p.V109M 0.11 deleterious(0) probably_damaging(0.927) TCGA-CV-6953-01 1 54060170 54060170 G A GLIS1 Missense_Mutation p.L136F 0.22 tolerated_low_confidence(0.07) benign(0.01) TCGA-CV-6953-01 20 3208447 3208447 C T SLC4A11 Missense_Mutation p.E915K 0.21 deleterious(0.03) possibly_damaging(0.767) TCGA-CV-6953-01 20 40192733 40192733 C T CHD6 Intron 0.17 TCGA-CV-6953-01 22 36688143 36688143 C A MYH9 Silent p.L1411L 0.11 TCGA-CV-6953-01 22 36688144 36688144 A G MYH9 Missense_Mutation p.L1411P 0.11 probably_damaging(0.953) TCGA-CV-6953-01 22 37098538 37098538 C A CACNG2 Silent p.V28V 0.23 TCGA-CV-6953-01 22 42189908 42189908 G C MEI1 Missense_Mutation p.D1141H 0.28 deleterious(0.02) benign(0.016) TCGA-CV-6953-01 2 105858505 105858505 G T GPR45 Missense_Mutation p.A64S 0.23 tolerated(0.08) benign(0.014) TCGA-CV-6953-01 2 111144800 111144800 G A LINC01106 5'Flank 0.13 TCGA-CV-6953-01 2 190619979 190619982 ACAG - OSGEPL1 Frame_Shift_Del p.L176Wfs*3 0.18 TCGA-CV-6953-01 2 197183717 197183717 C T HECW2 Missense_Mutation p.E633K 0.27 tolerated_low_confidence(0.44) benign(0.012) TCGA-CV-6953-01 2 202150039 202150039 C T CASP8 Nonsense_Mutation p.R494* 0.22 TCGA-CV-6953-01 2 207169470 207169470 C A ZDBF2 Missense_Mutation p.T73N 0.35 tolerated(0.32) benign(0.403) TCGA-CV-6953-01 2 220419305 220419305 C T OBSL1 Silent p.S1589S 0.23 TCGA-CV-6953-01 2 242573331 242573331 C T THAP4 Missense_Mutation p.V81M 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-6953-01 2 3726069 3726069 G A ALLC Silent p.P32P 0.18 TCGA-CV-6953-01 2 43953472 43953472 A T PLEKHH2 Missense_Mutation p.D868V 0.18 deleterious(0.03) probably_damaging(0.988) TCGA-CV-6953-01 2 56145351 56145351 C T EFEMP1 Intron 0.23 TCGA-CV-6953-01 3 113377777 113377777 G A KIAA2018 Nonsense_Mutation p.Q918* 0.26 TCGA-CV-6953-01 3 58120482 58120482 C G FLNB Missense_Mutation p.L1583V 0.24 tolerated(0.08) probably_damaging(0.999) TCGA-CV-6953-01 3 89448630 89448630 T A EPHA3 Missense_Mutation p.S532T 0.27 tolerated(0.62) benign(0.01) TCGA-CV-6953-01 4 175158632 175158632 T A FBXO8 Missense_Mutation p.Q297H 0.25 tolerated(0.35) benign(0.009) TCGA-CV-6953-01 4 185339790 185339790 G A IRF2 Missense_Mutation p.S87F 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-6953-01 4 5699317 5699317 C T EVC2 Intron 0.42 TCGA-CV-6953-01 4 69682402 69682402 G C UGT2B10 Missense_Mutation p.W222S 0.21 deleterious(0.04) possibly_damaging(0.493) TCGA-CV-6953-01 5 132556521 132556521 G A FSTL4 Silent p.D459D 0.18 TCGA-CV-6953-01 5 147819261 147819261 C G FBXO38 Missense_Mutation p.H951D 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-CV-6953-01 5 21817158 21817158 G T CDH12 Missense_Mutation p.Q300K 0.14 tolerated(0.44) benign(0.003) TCGA-CV-6953-01 5 34864544 34864544 G A TTC23L Missense_Mutation p.G180D 0.05 deleterious(0.03) benign(0.252) TCGA-CV-6953-01 5 57751189 57751189 C T PLK2 Missense_Mutation p.D560N 0.17 tolerated(0.29) benign(0.113) TCGA-CV-6953-01 5 94833175 94833175 G T TTC37 Missense_Mutation p.A1194D 0.24 tolerated(0.12) possibly_damaging(0.461) TCGA-CV-6953-01 6 118228943 118228943 G A SLC35F1 Silent p.P18P 0.46 TCGA-CV-6953-01 6 150322076 150322076 C T RAET1K RNA 0.22 TCGA-CV-6953-01 6 20124638 20124638 C T MBOAT1 Splice_Site p.X303_splice 0.19 TCGA-CV-6953-01 6 2779537 2779537 G A WRNIP1 Missense_Mutation p.A433T 0.26 deleterious(0.01) probably_damaging(0.937) TCGA-CV-6953-01 6 28120928 28120928 C T ZKSCAN8 Silent p.N290N 0.34 TCGA-CV-6953-01 6 36449469 36449469 G C KCTD20 Silent p.L263L 0.11 TCGA-CV-6953-01 6 42980233 42980233 C T MEA1 Missense_Mutation p.R178Q 0.17 tolerated(0.13) benign(0.008) TCGA-CV-6953-01 6 50681715 50681715 C T TFAP2D 5'UTR 0.24 TCGA-CV-6953-01 7 100358143 100358144 TA - ZAN Frame_Shift_Del p.Y1276Cfs*19 0.08 TCGA-CV-6953-01 7 100551548 100551548 C A MUC3A Missense_Mutation p.T100N 0.15 tolerated(0.13) possibly_damaging(0.795) TCGA-CV-6953-01 7 122635071 122635071 C A TAS2R16 Missense_Mutation p.Q206H 0.17 tolerated(0.17) probably_damaging(0.972) TCGA-CV-6953-01 7 127253563 127253563 C T PAX4 Missense_Mutation p.D188N 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-6953-01 7 141333766 141333766 C T AGK Silent p.G218G 0.27 TCGA-CV-6953-01 7 14789757 14789757 A C DGKB Intron 0.42 TCGA-CV-6953-01 7 150771490 150771490 G A SLC4A2 Missense_Mutation p.R932Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-6953-01 7 74105332 74105332 G A GTF2I Missense_Mutation p.E43K 0.25 deleterious(0) possibly_damaging(0.654) TCGA-CV-6953-01 7 88963666 88963666 G C ZNF804B Missense_Mutation p.W457S 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-6953-01 8 11637389 11637389 G A NEIL2 Missense_Mutation p.V141I 0.31 tolerated(1) benign(0.062) TCGA-CV-6953-01 8 18725364 18725364 C T PSD3 Missense_Mutation p.R485H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-6953-01 8 26722542 26722542 C T ADRA1A 5'UTR 0.23 TCGA-CV-6953-01 8 41791631 41791631 G A KAT6A Silent p.T1369T 0.14 TCGA-CV-6953-01 9 111745573 111745573 C T CTNNAL1 Missense_Mutation p.C251Y 0.19 deleterious(0) probably_damaging(1) TCGA-CV-6953-01 9 138011897 138011897 A G OLFM1 Missense_Mutation p.N426S 0.13 deleterious(0) possibly_damaging(0.874) TCGA-CV-6953-01 9 19346744 19346744 C G DENND4C Nonsense_Mutation p.S1277* 0.10 TCGA-CV-6953-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.53 TCGA-CV-6953-01 9 34290194 34290194 C T KIF24 Missense_Mutation p.D369N 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-6953-01 9 95043159 95043159 G A IARS Missense_Mutation p.S205L 0.12 deleterious(0) benign(0.41) TCGA-CV-6953-01 X 105183934 105183934 G A NRK Missense_Mutation p.E1291K 0.21 deleterious(0.04) benign(0.154) TCGA-CV-6953-01 X 107979141 107979141 C T IRS4 Missense_Mutation p.R145Q 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-CV-6953-01 X 153247752 153247752 T C TMEM187 Missense_Mutation p.L80P 0.21 tolerated(0.28) benign(0) TCGA-CV-6953-01 X 18662590 18662590 A C RS1 Missense_Mutation p.L161R 0.06 deleterious(0.02) benign(0.023) TCGA-CV-6953-01 X 34149003 34149003 C T FAM47A Missense_Mutation p.E465K 0.20 tolerated(0.13) probably_damaging(0.953) TCGA-CV-6953-01 X 70342193 70342193 G A MED12 Silent p.Q415Q 0.27 TCGA-CV-6954-01 10 11047387 11047387 G A RP1-251M9.3 3'Flank 0.22 TCGA-CV-6954-01 10 123310907 123310907 G T FGFR2 Missense_Mutation p.T174N 0.16 deleterious(0.01) possibly_damaging(0.627) TCGA-CV-6954-01 10 16526619 16526619 C G PTER Missense_Mutation p.A79G 0.05 deleterious(0.03) benign(0.12) TCGA-CV-6954-01 10 62652607 62652607 T C RHOBTB1 Missense_Mutation p.D148G 0.20 tolerated(0.05) probably_damaging(1) TCGA-CV-6954-01 11 105623796 105623796 T A GRIA4 Missense_Mutation p.L113I 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-CV-6954-01 11 117789510 117789510 G C TMPRSS13 Missense_Mutation p.A22G 0.14 tolerated_low_confidence(0.35) benign(0.024) TCGA-CV-6954-01 11 118377362 118377362 G T KMT2A Splice_Site p.X3585_splice 0.07 TCGA-CV-6954-01 11 124763789 124763789 G A ROBO4 Missense_Mutation p.R491C 0.17 deleterious(0.02) benign(0.014) TCGA-CV-6954-01 11 134027943 134027943 T C NCAPD3 Missense_Mutation p.I1352V 0.21 tolerated(0.25) benign(0.023) TCGA-CV-6954-01 11 5344901 5344901 A G OR51B2 Silent p.C209C 0.17 TCGA-CV-6954-01 11 55927529 55927529 G A OR8K5 Nonsense_Mutation p.R89* 0.16 TCGA-CV-6954-01 11 64604277 64604277 G C CDC42BPG Missense_Mutation p.P440A 0.44 tolerated(0.22) benign(0.001) TCGA-CV-6954-01 11 76371159 76371159 A T LRRC32 Nonsense_Mutation p.L493* 0.15 TCGA-CV-6954-01 12 101732715 101732715 A G UTP20 Silent p.K1331K 0.32 TCGA-CV-6954-01 12 122213541 122213541 C T TMEM120B Silent p.L311L 0.38 TCGA-CV-6954-01 12 32133942 32133942 A T KIAA1551 Missense_Mutation p.K18I 0.41 deleterious(0) probably_damaging(0.989) TCGA-CV-6954-01 12 4599038 4599038 G C C12orf4 Missense_Mutation p.L532V 0.46 deleterious(0.01) probably_damaging(0.942) TCGA-CV-6954-01 12 6342628 6342628 C G CD9 Missense_Mutation p.I108M 0.41 deleterious(0.01) possibly_damaging(0.9) TCGA-CV-6954-01 12 9313713 9313713 C T PZP Splice_Site p.X930_splice 0.10 TCGA-CV-6954-01 12 95887871 95887871 A G METAP2 Silent p.K156K 0.05 TCGA-CV-6954-01 13 79896555 79896555 G C RBM26 Missense_Mutation p.L928V 0.58 tolerated(0.22) probably_damaging(0.998) TCGA-CV-6954-01 14 102384193 102384193 C T PPP2R5C Missense_Mutation p.T482I 0.28 tolerated(0.23) benign(0.005) TCGA-CV-6954-01 14 30046531 30046531 C A PRKD1 Silent p.L884L 0.24 TCGA-CV-6954-01 14 68272336 68272336 C A ZFYVE26 Splice_Site p.X340_splice 0.11 TCGA-CV-6954-01 14 68272337 68272337 T C ZFYVE26 Splice_Site p.X340_splice 0.11 TCGA-CV-6954-01 14 75369021 75369021 C G DLST Silent p.L450L 0.22 TCGA-CV-6954-01 15 40756083 40756083 A G BAHD1 Silent p.R613R 0.33 TCGA-CV-6954-01 15 41814044 41814044 G C RPAP1 Missense_Mutation p.A977G 0.10 deleterious(0.03) benign(0.05) TCGA-CV-6954-01 15 43819557 43819557 G C MAP1A Missense_Mutation p.E1962D 0.27 probably_damaging(0.995) TCGA-CV-6954-01 15 48500299 48500299 G A SLC12A1 Missense_Mutation p.R128Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-CV-6954-01 15 53998227 53998227 T C WDR72 Silent p.K333K 0.11 TCGA-CV-6954-01 15 66645273 66645273 G A TIPIN Nonsense_Mutation p.Q5* 0.19 TCGA-CV-6954-01 15 80762647 80762647 G T ARNT2 Missense_Mutation p.A95S 0.29 deleterious(0.04) possibly_damaging(0.808) TCGA-CV-6954-01 15 80872870 80872870 C T ARNT2 Missense_Mutation p.R578C 0.28 deleterious(0) possibly_damaging(0.876) TCGA-CV-6954-01 15 91447520 91447520 G A MAN2A2 Missense_Mutation p.R28Q 0.23 tolerated(0.19) possibly_damaging(0.716) TCGA-CV-6954-01 16 1262016 1262016 T C CACNA1H Missense_Mutation p.V1546A 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-CV-6954-01 16 20347992 20347992 T C UMOD Missense_Mutation p.N600D 0.11 tolerated(0.74) possibly_damaging(0.905) TCGA-CV-6954-01 16 22545874 22545874 C T NPIPB5 Missense_Mutation p.P524S 0.03 tolerated_low_confidence(0.14) possibly_damaging(0.876) TCGA-CV-6954-01 16 24802394 24802394 A G TNRC6A Missense_Mutation p.T811A 0.24 tolerated(0.2) benign(0.004) TCGA-CV-6954-01 16 50733835 50733835 C T NOD2 Silent p.I170I 0.33 TCGA-CV-6954-01 16 67778258 67778258 G A RANBP10 Silent p.D167D 0.18 TCGA-CV-6954-01 16 67860602 67860602 C A TSNAXIP1 Missense_Mutation p.T416K 0.34 tolerated(0.64) benign(0.002) TCGA-CV-6954-01 16 70548314 70548314 C A COG4 Missense_Mutation p.E156D 0.18 deleterious(0.01) possibly_damaging(0.908) TCGA-CV-6954-01 16 72094609 72094609 A G HP Silent p.Q347Q 0.07 TCGA-CV-6954-01 16 90001910 90001910 G T TUBB3 Missense_Mutation p.V351L 0.05 deleterious_low_confidence(0) benign(0.117) TCGA-CV-6954-01 17 34341417 34341417 G T CCL23 Missense_Mutation p.F31L 0.22 tolerated(0.52) benign(0.002) TCGA-CV-6954-01 17 36868952 36868952 G A MLLT6 Silent p.K243K 0.05 TCGA-CV-6954-01 17 39280340 39280340 T C KRTAP4-12 Missense_Mutation p.D12G 0.17 deleterious(0.02) unknown(0) TCGA-CV-6954-01 17 39679917 39679917 G A KRT19 3'UTR 0.22 TCGA-CV-6954-01 17 46053298 46053298 C T CDK5RAP3 Silent p.Y239Y 0.11 TCGA-CV-6954-01 17 72519656 72519656 G C CD300LB Intron 0.10 TCGA-CV-6954-01 18 61390542 61390542 C T SERPINB11 Missense_Mutation p.A363V 0.30 tolerated(0.5) benign(0.01) TCGA-CV-6954-01 19 18119198 18119198 G A ARRDC2 Missense_Mutation p.G27S 0.22 deleterious(0.04) probably_damaging(1) TCGA-CV-6954-01 19 33200163 33200163 G A NUDT19 Missense_Mutation p.E263K 0.04 deleterious(0.04) probably_damaging(1) TCGA-CV-6954-01 19 40321138 40321140 CTT - DYRK1B In_Frame_Del p.K83del 0.27 TCGA-CV-6954-01 19 42471441 42471441 G A ATP1A3 Silent p.Y1004Y 0.40 TCGA-CV-6954-01 19 47423097 47423097 G C ARHGAP35 Missense_Mutation p.D389H 0.23 tolerated(0.1) possibly_damaging(0.885) TCGA-CV-6954-01 19 54466493 54466493 G A CACNG8 Missense_Mutation p.G33S 0.27 tolerated(0.77) benign(0.335) TCGA-CV-6954-01 19 58991738 58991738 C T ZNF446 Missense_Mutation p.T333M 0.24 tolerated(0.24) benign(0.009) TCGA-CV-6954-01 19 6926416 6926416 T G EMR1 Missense_Mutation p.F676V 0.19 deleterious(0) probably_damaging(0.994) TCGA-CV-6954-01 19 7754314 7754314 T G FCER2 Missense_Mutation p.N244T 0.22 deleterious(0) probably_damaging(1) TCGA-CV-6954-01 19 7794310 7794310 T C CLEC4G Missense_Mutation p.D275G 0.06 deleterious(0) probably_damaging(0.992) TCGA-CV-6954-01 1 108307728 108307728 C T VAV3 Silent p.K297K 0.12 TCGA-CV-6954-01 1 148342511 148342511 T G NBPF20 Missense_Mutation p.Q175H 0.10 benign(0.224) TCGA-CV-6954-01 1 149859412 149859412 A T HIST2H2AB Missense_Mutation p.S19T 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-6954-01 1 157557209 157557209 A G FCRL4 Missense_Mutation p.V235A 0.08 tolerated(0.09) benign(0.403) TCGA-CV-6954-01 1 168274253 168274253 C A TBX19 Silent p.G245G 0.19 TCGA-CV-6954-01 1 196227581 196227581 T A KCNT2 Missense_Mutation p.D985V 0.11 deleterious(0) possibly_damaging(0.588) TCGA-CV-6954-01 1 213277842 213277842 A T RPS6KC1 Missense_Mutation p.E103D 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-6954-01 1 222802470 222802470 T A MIA3 Missense_Mutation p.D636E 0.18 tolerated(0.45) benign(0.015) TCGA-CV-6954-01 1 229637829 229637829 T C NUP133 Missense_Mutation p.N108D 0.06 tolerated(0.07) benign(0.015) TCGA-CV-6954-01 1 235827826 235827826 T C LYST Missense_Mutation p.N3712D 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-CV-6954-01 1 24669194 24669194 G A GRHL3 Missense_Mutation p.R406K 0.04 deleterious(0) probably_damaging(0.997) TCGA-CV-6954-01 1 33149862 33149862 T C SYNC Missense_Mutation p.Y452C 0.43 deleterious(0) probably_damaging(0.991) TCGA-CV-6954-01 1 45792887 45792887 C T HPDL Missense_Mutation p.R23W 0.46 deleterious(0.01) possibly_damaging(0.629) TCGA-CV-6954-01 1 64643163 64643163 G A ROR1 Missense_Mutation p.G480D 0.07 deleterious(0) probably_damaging(1) TCGA-CV-6954-01 1 66074565 66074565 G T LEPR Missense_Mutation p.G578V 0.38 deleterious(0.01) possibly_damaging(0.628) TCGA-CV-6954-01 1 86904619 86904619 A T CLCA2 Missense_Mutation p.I345F 0.07 tolerated(0.05) benign(0.332) TCGA-CV-6954-01 1 87558326 87558326 C T HS2ST1 Missense_Mutation p.R188W 0.14 deleterious(0.03) possibly_damaging(0.729) TCGA-CV-6954-01 20 2636321 2636321 A G NOP56 Missense_Mutation p.S280G 0.10 tolerated(0.18) benign(0.01) TCGA-CV-6954-01 20 30136781 30136781 G A HM13 Intron 0.10 TCGA-CV-6954-01 20 3766487 3766487 T C CENPB Missense_Mutation p.D215G 0.09 tolerated(1) unknown(0) TCGA-CV-6954-01 20 3766501 3766501 C A CENPB Silent p.G210G 0.11 TCGA-CV-6954-01 20 44416545 44416545 T C WFDC3 Silent p.P96P 0.10 TCGA-CV-6954-01 20 50140072 50140072 C T NFATC2 Silent p.S236S 0.10 TCGA-CV-6954-01 20 50705115 50705115 G A ZFP64 Silent p.H151H 0.40 TCGA-CV-6954-01 20 61490757 61490757 C G TCFL5 Missense_Mutation p.R318T 0.09 tolerated(0.4) probably_damaging(0.989) TCGA-CV-6954-01 21 34072212 34072212 A T SYNJ1 Missense_Mutation p.L178I 0.17 tolerated(0.09) possibly_damaging(0.805) TCGA-CV-6954-01 21 34997056 34997056 G T CRYZL1 Missense_Mutation p.P26H 0.20 deleterious(0) benign(0.019) TCGA-CV-6954-01 22 20229737 20229737 G A RTN4R Nonsense_Mutation p.Q307* 0.30 TCGA-CV-6954-01 22 41923887 41923887 A G POLR3H 3'UTR 0.24 TCGA-CV-6954-01 2 108625031 108625031 G T SLC5A7 Missense_Mutation p.G336C 0.18 deleterious(0) probably_damaging(0.987) TCGA-CV-6954-01 2 109383950 109383950 C G RANBP2 Missense_Mutation p.L2319V 0.34 tolerated(0.11) benign(0.222) TCGA-CV-6954-01 2 176964535 176964535 T C HOXD12 Silent p.C2C 0.47 TCGA-CV-6954-01 2 179602873 179602873 C G TTN Missense_Mutation p.E4769D 0.14 TCGA-CV-6954-01 2 233128057 233128057 C T DIS3L2 Silent p.S522S 0.19 TCGA-CV-6954-01 2 234465540 234465540 C G USP40 Missense_Mutation p.Q181H 0.18 tolerated(0.06) benign(0.136) TCGA-CV-6954-01 2 24498605 24498606 - T ITSN2 Frame_Shift_Ins p.K687Efs*5 0.15 TCGA-CV-6954-01 2 31600014 31600014 T A XDH Silent p.P444P 0.06 TCGA-CV-6954-01 2 31805847 31805847 G A SRD5A2 RNA 0.21 TCGA-CV-6954-01 2 55407666 55407666 T A CLHC1 Missense_Mutation p.Q455L 0.05 deleterious(0) possibly_damaging(0.486) TCGA-CV-6954-01 2 55539617 55539617 C G CCDC88A Missense_Mutation p.Q1343H 0.19 deleterious(0.01) possibly_damaging(0.76) TCGA-CV-6954-01 2 96937180 96937180 G A CIAO1 3'UTR 0.55 TCGA-CV-6954-01 2 97845475 97845475 T G ANKRD36 Missense_Mutation p.V545G 0.10 deleterious_low_confidence(0) possibly_damaging(0.771) TCGA-CV-6954-01 3 101375081 101375081 C G ZBTB11 Missense_Mutation p.K686N 0.17 deleterious(0) probably_damaging(0.993) TCGA-CV-6954-01 3 102157324 102157324 G T ZPLD1 Missense_Mutation p.G14V 0.21 tolerated_low_confidence(0.16) possibly_damaging(0.522) TCGA-CV-6954-01 3 129695649 129695649 G T TRH Missense_Mutation p.A107S 0.06 tolerated(0.35) possibly_damaging(0.527) TCGA-CV-6954-01 3 136219098 136219098 G C STAG1 Missense_Mutation p.S290C 0.31 tolerated(0.07) benign(0.005) TCGA-CV-6954-01 3 137749921 137749921 G A CLDN18 Missense_Mutation p.D242N 0.16 tolerated(0.59) benign(0.001) TCGA-CV-6954-01 3 137893473 137893474 - GT DBR1 Frame_Shift_Ins p.P56Rfs*53 0.26 TCGA-CV-6954-01 3 141328366 141328366 G T RASA2 Splice_Site p.X777_splice 0.08 TCGA-CV-6954-01 3 195590982 195590982 C T TNK2 3'UTR 0.33 TCGA-CV-6954-01 3 30732963 30732963 G T TGFBR2 Nonsense_Mutation p.E551* 0.53 TCGA-CV-6954-01 3 38888436 38888436 C G SCN11A Missense_Mutation p.E1709Q 0.22 deleterious(0) possibly_damaging(0.847) TCGA-CV-6954-01 3 46399419 46399419 T A CCR2 Missense_Mutation p.L134Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-CV-6954-01 4 148944475 148944475 C G ARHGAP10 Missense_Mutation p.P593R 0.12 tolerated(0.17) probably_damaging(0.997) TCGA-CV-6954-01 4 1656773 1656773 G A FAM53A Missense_Mutation p.R272C 0.22 deleterious(0.02) benign(0) TCGA-CV-6954-01 4 38800207 38800207 C T TLR1 Silent p.Q82Q 0.04 TCGA-CV-6954-01 4 52861436 52861436 T C LRRC66 Missense_Mutation p.I584M 0.03 tolerated(1) benign(0) TCGA-CV-6954-01 4 5627547 5627547 C T EVC2 Missense_Mutation p.D659N 0.13 tolerated(0.2) benign(0.335) TCGA-CV-6954-01 4 66213889 66213889 T A EPHA5 Silent p.P847P 0.20 TCGA-CV-6954-01 4 66217243 66217243 A G EPHA5 Missense_Mutation p.L791P 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6954-01 4 72204910 72204910 G T SLC4A4 Intron 0.28 TCGA-CV-6954-01 5 13762885 13762885 C T DNAH5 Nonsense_Mutation p.W3409* 0.20 TCGA-CV-6954-01 5 139193154 139193154 C A PSD2 Missense_Mutation p.A211E 0.07 tolerated(0.13) possibly_damaging(0.765) TCGA-CV-6954-01 5 140553868 140553868 C T PCDHB7 Silent p.A484A 0.20 TCGA-CV-6954-01 5 147513386 147513386 G A SPINK5 Missense_Mutation p.R1071H 0.25 tolerated(0.25) benign(0.055) TCGA-CV-6954-01 5 150885203 150885203 G A FAT2 Missense_Mutation p.P4325S 0.46 benign(0.098) TCGA-CV-6954-01 5 17276034 17276034 A G BASP1 3'UTR 0.39 TCGA-CV-6954-01 5 175110708 175110708 T A HRH2 Missense_Mutation p.W158R 0.25 deleterious(0) probably_damaging(1) TCGA-CV-6954-01 5 40852441 40852441 G A CARD6 Missense_Mutation p.R336Q 0.12 deleterious(0.04) benign(0.001) TCGA-CV-6954-01 5 45262321 45262321 G A HCN1 Missense_Mutation p.S792L 0.08 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-CV-6954-01 5 90040951 90040951 T A GPR98 Silent p.P3546P 0.03 TCGA-CV-6954-01 6 117086362 117086362 G A FAM162B Silent p.L77L 0.23 TCGA-CV-6954-01 6 159687230 159687230 T C FNDC1 Missense_Mutation p.L1800P 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-6954-01 6 161143527 161143527 G T PLG Missense_Mutation p.G395V 0.09 deleterious(0) probably_damaging(1) TCGA-CV-6954-01 6 25826725 25826725 G A SLC17A1 Silent p.P57P 0.25 TCGA-CV-6954-01 6 26225492 26225492 A T HIST1H3E Missense_Mutation p.K37M 0.61 deleterious_low_confidence(0.01) benign(0.164) TCGA-CV-6954-01 6 31778509 31778509 G T HSPA1L Missense_Mutation p.A414D 0.08 tolerated_low_confidence(0.43) possibly_damaging(0.581) TCGA-CV-6954-01 6 32819997 32819997 C T TAP1 Missense_Mutation p.G305S 0.07 tolerated(0.49) benign(0.14) TCGA-CV-6954-01 6 39512320 39512320 A T KIF6 Intron 0.54 TCGA-CV-6954-01 6 43027844 43027844 C T KLC4 5'UTR 0.11 TCGA-CV-6954-01 6 43305026 43305026 T G ZNF318 Missense_Mutation p.K2237T 0.04 probably_damaging(0.96) TCGA-CV-6954-01 6 44272035 44272035 C T AARS2 Silent p.A630A 0.15 TCGA-CV-6954-01 7 11630196 11630196 G A THSD7A Silent p.R448R 0.17 TCGA-CV-6954-01 7 2472365 2472365 G A CHST12 Missense_Mutation p.A31T 0.51 tolerated(0.83) benign(0.003) TCGA-CV-6954-01 7 24758712 24758712 T A DFNA5 Missense_Mutation p.E177V 0.18 tolerated(0.05) possibly_damaging(0.863) TCGA-CV-6954-01 7 37250998 37250998 C T ELMO1 Missense_Mutation p.G360E 0.07 deleterious(0) probably_damaging(1) TCGA-CV-6954-01 7 38282073 38282073 A C TRGC2 Missense_Mutation p.V128G 0.03 tolerated(0.3) benign(0.001) TCGA-CV-6954-01 7 42961439 42961439 T C PSMA2 Intron 0.05 TCGA-CV-6954-01 7 83592582 83592582 T A SEMA3A Missense_Mutation p.K600M 0.28 deleterious(0) possibly_damaging(0.85) TCGA-CV-6954-01 7 98548528 98548528 C G TRRAP Missense_Mutation p.F1781L 0.03 possibly_damaging(0.593) TCGA-CV-6954-01 8 100513997 100513997 C G VPS13B Missense_Mutation p.T1318S 0.07 tolerated_low_confidence(1) benign(0) TCGA-CV-6954-01 8 110509169 110509169 A T PKHD1L1 Missense_Mutation p.K3450M 0.17 deleterious(0.04) possibly_damaging(0.796) TCGA-CV-6954-01 8 124219421 124219421 G C FAM83A Silent p.V266V 0.44 TCGA-CV-6954-01 8 126091066 126091066 C T KIAA0196 Missense_Mutation p.E209K 0.25 deleterious(0) probably_damaging(0.983) TCGA-CV-6954-01 8 145101649 145101649 C A SPATC1 Missense_Mutation p.A523E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6954-01 8 61777711 61777711 C T CHD7 Missense_Mutation p.T2738M 0.33 probably_damaging(0.965) TCGA-CV-6954-01 8 62556539 62556539 T G ASPH Missense_Mutation p.D225A 0.25 tolerated_low_confidence(0.06) possibly_damaging(0.755) TCGA-CV-6954-01 9 100895440 100895440 A G CORO2A Silent p.I176I 0.05 TCGA-CV-6954-01 9 107457531 107457531 T A OR13D1 Missense_Mutation p.S277T 0.06 deleterious(0) benign(0.006) TCGA-CV-6954-01 9 113704008 113704008 C T LPAR1 Silent p.R162R 0.23 TCGA-CV-6954-01 9 129958852 129958852 C - RALGPS1 Frame_Shift_Del p.R381Efs*6 0.16 TCGA-CV-6954-01 9 99581247 99581247 A - ZNF782 Frame_Shift_Del p.F353Sfs*9 0.37 TCGA-CV-6954-01 X 101139015 101139015 C T ZMAT1 Missense_Mutation p.V462M 0.48 tolerated(0.07) benign(0.071) TCGA-CV-6954-01 X 108902623 108902623 T A ACSL4 Missense_Mutation p.E646D 0.55 deleterious(0.02) probably_damaging(0.984) TCGA-CV-6954-01 X 128640093 128640093 G A SMARCA1 Silent p.L354L 0.51 TCGA-CV-6954-01 X 73063633 73063633 G T XIST RNA 0.42 TCGA-CV-6954-01 Y 16936196 16936196 G T NLGN4Y Missense_Mutation p.G252C 0.08 deleterious(0) probably_damaging(1) TCGA-CV-6954-01 Y 21761715 21761715 A G RP11-576C2.1 3'Flank 0.14 TCGA-CV-6955-01 10 12197794 12197794 G A SEC61A2 Silent p.L160L 0.10 TCGA-CV-6955-01 10 123970684 123970684 G A TACC2 Silent p.S2248S 0.08 TCGA-CV-6955-01 10 124598737 124598737 C T CUZD1 Missense_Mutation p.D82N 0.06 tolerated(0.99) benign(0.015) TCGA-CV-6955-01 10 48370455 48370455 G A ZNF488 5'UTR 0.22 TCGA-CV-6955-01 10 91066451 91066451 A T IFIT2 Silent p.V246V 0.25 TCGA-CV-6955-01 10 99400465 99400465 G C PI4K2A 5'UTR 0.20 TCGA-CV-6955-01 11 110451310 110451310 C G ARHGAP20 Missense_Mutation p.G787A 0.05 tolerated_low_confidence(0.11) probably_damaging(0.938) TCGA-CV-6955-01 11 14540580 14540580 T C PSMA1 Missense_Mutation p.N10S 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-CV-6955-01 11 18467778 18467778 G A LDHC Silent p.L244L 0.08 TCGA-CV-6955-01 11 281225 281225 C G NLRP6 Missense_Mutation p.F497L 0.04 deleterious(0) probably_damaging(0.997) TCGA-CV-6955-01 12 120166409 120166409 G C CIT Silent p.L1163L 0.05 TCGA-CV-6955-01 12 21919137 21919137 C G KCNJ8 Missense_Mutation p.L265F 0.30 deleterious(0) probably_damaging(0.995) TCGA-CV-6955-01 12 29486610 29486610 C T FAR2 Silent p.I477I 0.06 TCGA-CV-6955-01 12 53509201 53509201 C T SOAT2 Silent p.I157I 0.08 TCGA-CV-6955-01 12 56075775 56075775 C T METTL7B Silent p.C79C 0.20 TCGA-CV-6955-01 13 28136648 28136648 C A LNX2 Missense_Mutation p.A376S 0.12 tolerated(0.1) probably_damaging(0.999) TCGA-CV-6955-01 13 46559752 46559752 C T ZC3H13 Missense_Mutation p.R467Q 0.06 unknown(0) TCGA-CV-6955-01 13 52660423 52660423 C A NEK5 Missense_Mutation p.R490I 0.23 tolerated(0.2) benign(0.014) TCGA-CV-6955-01 14 105411954 105411954 G A AHNAK2 Silent p.V3278V 0.11 TCGA-CV-6955-01 14 21870656 21870656 C T CHD8 Missense_Mutation p.A1241T 0.41 deleterious(0) benign(0.249) TCGA-CV-6955-01 14 31358870 31358870 T G COCH Missense_Mutation p.L509R 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6955-01 14 44975153 44975153 A T FSCB Silent p.L346L 0.11 TCGA-CV-6955-01 14 69890883 69890883 G A SLC39A9 Missense_Mutation p.E57K 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-6955-01 14 94060062 94060062 G A UNC79 Silent p.L846L 0.19 TCGA-CV-6955-01 15 39881288 39881288 G A THBS1 Splice_Site p.X591_splice 0.04 TCGA-CV-6955-01 15 42059359 42059359 A - MGA Frame_Shift_Del p.M3028* 0.18 TCGA-CV-6955-01 15 85163919 85163919 G C ZSCAN2 Missense_Mutation p.E165Q 0.05 tolerated(0.48) benign(0.043) TCGA-CV-6955-01 15 91020962 91020962 G C IQGAP1 Missense_Mutation p.S1057T 0.08 tolerated(0.1) benign(0.033) TCGA-CV-6955-01 15 98512388 98512388 T C ARRDC4 Missense_Mutation p.C221R 0.25 deleterious(0.01) probably_damaging(0.938) TCGA-CV-6955-01 16 15677026 15677026 G A C16orf45 Missense_Mutation p.D145N 0.14 deleterious(0.01) possibly_damaging(0.864) TCGA-CV-6955-01 16 2011519 2011519 C G NDUFB10 Missense_Mutation p.I97M 0.03 deleterious(0.02) benign(0.329) TCGA-CV-6955-01 16 24552017 24552017 A G RBBP6 Missense_Mutation p.I24V 0.20 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-CV-6955-01 16 57101666 57101666 C T NLRC5 Silent p.L1475L 0.06 TCGA-CV-6955-01 16 67913808 67913808 G T EDC4 Missense_Mutation p.S626I 0.29 deleterious(0) benign(0.105) TCGA-CV-6955-01 16 70867859 70867859 C A HYDIN Missense_Mutation p.G4537V 0.35 probably_damaging(0.988) TCGA-CV-6955-01 17 12666526 12666526 C G MYOCD Missense_Mutation p.I842M 0.05 tolerated(0.15) benign(0.009) TCGA-CV-6955-01 17 1387008 1387008 G A MYO1C Silent p.G81G 0.16 TCGA-CV-6955-01 17 1562841 1562841 C A PRPF8 Missense_Mutation p.D1650Y 0.10 deleterious(0) probably_damaging(0.968) TCGA-CV-6955-01 17 17718569 17718569 G A SREBF1 Missense_Mutation p.P850S 0.07 deleterious(0) probably_damaging(0.982) TCGA-CV-6955-01 17 18040913 18040913 A G MYO15A Missense_Mutation p.S1599G 0.08 unknown(0) TCGA-CV-6955-01 17 41004139 41004139 C T AOC3 Missense_Mutation p.T260I 0.17 deleterious(0.02) benign(0.194) TCGA-CV-6955-01 17 42475597 42475597 G A GPATCH8 Missense_Mutation p.A1283V 0.04 tolerated(0.6) unknown(0) TCGA-CV-6955-01 17 76506502 76506502 G A DNAH17 Silent p.I1396I 0.03 TCGA-CV-6955-01 17 79872320 79872320 G A SIRT7 Silent p.G222G 0.20 TCGA-CV-6955-01 17 80332288 80332288 G A UTS2R Missense_Mutation p.A30T 0.18 tolerated(0.46) benign(0.004) TCGA-CV-6955-01 19 19042181 19042181 C T HOMER3 Missense_Mutation p.E283K 0.05 deleterious(0.01) benign(0.254) TCGA-CV-6955-01 19 37880095 37880095 G T ZNF527 Missense_Mutation p.G382C 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6955-01 19 43382262 43382262 T C PSG1 Missense_Mutation p.Y78C 0.19 deleterious(0.03) probably_damaging(0.916) TCGA-CV-6955-01 19 43920038 43920038 G C TEX101 Missense_Mutation p.Q7H 0.04 tolerated_low_confidence(0.16) benign(0.07) TCGA-CV-6955-01 19 4704050 4704050 G A DPP9 Missense_Mutation p.P206L 0.15 deleterious(0) probably_damaging(1) TCGA-CV-6955-01 19 57037232 57037232 A G ZNF471 Missense_Mutation p.Y599C 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6955-01 19 57327549 57327549 G A PEG3 Missense_Mutation p.S754F 0.06 deleterious(0.02) possibly_damaging(0.707) TCGA-CV-6955-01 1 111216780 111216780 G A KCNA3 Missense_Mutation p.R218C 0.11 deleterious(0) possibly_damaging(0.885) TCGA-CV-6955-01 1 156020169 156020169 C T UBQLN4 Missense_Mutation p.M218I 0.04 tolerated(0.07) benign(0.119) TCGA-CV-6955-01 1 15789236 15789236 G C CELA2A Missense_Mutation p.R79T 0.31 tolerated(0.2) benign(0.008) TCGA-CV-6955-01 1 200619738 200619738 C G DDX59 Missense_Mutation p.D377H 0.07 deleterious(0.02) probably_damaging(0.948) TCGA-CV-6955-01 1 22172685 22172685 G A HSPG2 Missense_Mutation p.R2794W 0.34 probably_damaging(0.927) TCGA-CV-6955-01 1 228362900 228362900 G A IBA57 Missense_Mutation p.V253M 0.09 deleterious(0.01) probably_damaging(0.915) TCGA-CV-6955-01 1 230979431 230979431 C T C1orf198 Missense_Mutation p.R199Q 0.17 deleterious(0.01) probably_damaging(1) TCGA-CV-6955-01 1 248224880 248224880 C A OR2L3 Silent p.A299A 0.14 TCGA-CV-6955-01 1 248366774 248366774 C G OR2M3 Silent p.L135L 0.05 TCGA-CV-6955-01 1 53074111 53074111 T A GPX7 3'UTR 0.20 TCGA-CV-6955-01 1 53930414 53930414 G A DMRTB1 Silent p.P285P 0.15 TCGA-CV-6955-01 1 57257877 57257877 G T C1orf168 Silent p.P203P 0.06 TCGA-CV-6955-01 1 6534542 6534542 G A PLEKHG5 Silent p.Y215Y 0.16 TCGA-CV-6955-01 1 6609717 6609717 A G NOL9 Missense_Mutation p.S220P 0.09 deleterious(0.01) possibly_damaging(0.828) TCGA-CV-6955-01 1 79002110 79002110 G A PTGFR Missense_Mutation p.G273E 0.06 tolerated(0.14) benign(0.122) TCGA-CV-6955-01 20 61542619 61542619 C T DIDO1 Missense_Mutation p.E116K 0.12 probably_damaging(0.997) TCGA-CV-6955-01 20 61914181 61914181 T G ARFGAP1 Missense_Mutation p.F232C 0.25 deleterious(0.04) possibly_damaging(0.749) TCGA-CV-6955-01 21 10996103 10996103 G C TPTE RNA 0.06 TCGA-CV-6955-01 21 19704465 19704465 C G TMPRSS15 Silent p.L530L 0.06 TCGA-CV-6955-01 21 35209324 35209324 G C ITSN1 Intron 0.03 TCGA-CV-6955-01 22 17629399 17629399 C T CECR5 Missense_Mutation p.E128K 0.05 tolerated(0.24) benign(0.004) TCGA-CV-6955-01 22 42294718 42294718 G T SREBF2 Missense_Mutation p.D891Y 0.35 deleterious(0) probably_damaging(0.99) TCGA-CV-6955-01 22 43870809 43870809 C T MPPED1 Silent p.T200T 0.31 TCGA-CV-6955-01 2 141250263 141250263 C G LRP1B Splice_Site p.X3012_splice 0.08 TCGA-CV-6955-01 2 178098810 178098810 C T NFE2L2 Missense_Mutation p.E79K 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-6955-01 2 232123816 232123816 G A ARMC9 Splice_Site p.X342_splice 0.29 TCGA-CV-6955-01 2 31215732 31215732 G A GALNT14 Intron 0.06 TCGA-CV-6955-01 2 74733102 74733102 C T PCGF1 Silent p.L169L 0.06 TCGA-CV-6955-01 3 127842450 127842450 C A RUVBL1 Missense_Mutation p.V40L 0.17 deleterious(0.01) possibly_damaging(0.855) TCGA-CV-6955-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.13 deleterious(0.04) probably_damaging(0.96) TCGA-CV-6955-01 3 30715720 30715720 C T TGFBR2 Missense_Mutation p.R485C 0.09 deleterious(0) probably_damaging(1) TCGA-CV-6955-01 3 48488144 48488144 C G ATRIP 5'UTR 0.11 TCGA-CV-6955-01 3 52857598 52857598 G T ITIH4 Missense_Mutation p.L505I 0.23 deleterious(0.01) possibly_damaging(0.899) TCGA-CV-6955-01 3 53844020 53844020 G A CACNA1D Missense_Mutation p.G1983S 0.18 tolerated_low_confidence(0.1) probably_damaging(0.981) TCGA-CV-6955-01 3 88205752 88205752 G A C3orf38 Silent p.Q319Q 0.22 TCGA-CV-6955-01 4 123336584 123336584 C T ADAD1 Missense_Mutation p.R434C 0.16 deleterious(0) probably_damaging(1) TCGA-CV-6955-01 4 187539957 187539959 GTG - FAT1 In_Frame_Del p.P2594del 0.14 TCGA-CV-6955-01 4 187629100 187629100 G A FAT1 Nonsense_Mutation p.R628* 0.08 TCGA-CV-6955-01 4 187630411 187630411 G A FAT1 Nonsense_Mutation p.R191* 0.09 TCGA-CV-6955-01 4 24801554 24801554 G C SOD3 Silent p.V137V 0.13 TCGA-CV-6955-01 4 4314793 4314793 G A ZBTB49 Missense_Mutation p.R443Q 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6955-01 4 5800433 5800433 A G EVC Missense_Mutation p.M740V 0.23 tolerated(0.43) benign(0.001) TCGA-CV-6955-01 5 111066653 111066653 G A NREP Missense_Mutation p.R102C 0.23 tolerated(0.27) benign(0.033) TCGA-CV-6955-01 5 115298293 115298293 G A AQPEP 5'UTR 0.18 TCGA-CV-6955-01 5 140799566 140799566 C T PCDHGB7 Missense_Mutation p.R714C 0.32 tolerated(0.06) probably_damaging(0.947) TCGA-CV-6955-01 5 140810887 140810887 C T PCDHGA12 Silent p.D187D 0.06 TCGA-CV-6955-01 5 150924152 150924153 - T FAT2 Frame_Shift_Ins p.R2179Kfs*4 0.11 TCGA-CV-6955-01 5 171471752 171471752 G A STK10 3'UTR 0.16 TCGA-CV-6955-01 5 56234739 56234739 C G MIER3 Missense_Mutation p.D96H 0.08 tolerated(0.06) probably_damaging(0.968) TCGA-CV-6955-01 5 79473175 79473175 C T SERINC5 Missense_Mutation p.G140E 0.08 deleterious(0.05) probably_damaging(0.993) TCGA-CV-6955-01 6 13601120 13601120 G T SIRT5 Missense_Mutation p.A266S 0.14 tolerated(0.68) benign(0.002) TCGA-CV-6955-01 6 145103095 145103095 C G UTRN Missense_Mutation p.F2890L 0.09 tolerated(0.19) possibly_damaging(0.887) TCGA-CV-6955-01 6 153347617 153347617 T G RGS17 Missense_Mutation p.M61L 0.26 tolerated(1) benign(0) TCGA-CV-6955-01 6 158565392 158565392 C T SERAC1 Missense_Mutation p.R183Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-CV-6955-01 6 169648845 169648845 C G THBS2 Missense_Mutation p.Q92H 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-6955-01 6 17291995 17291995 C T RBM24 Missense_Mutation p.A119V 0.14 tolerated(0.16) benign(0.165) TCGA-CV-6955-01 6 40359667 40359667 C A LRFN2 3'UTR 0.27 TCGA-CV-6955-01 7 101838850 101838850 G A CUX1 Missense_Mutation p.A408T 0.12 tolerated(0.36) unknown(0) TCGA-CV-6955-01 7 102584992 102584993 - A LRRC17 Frame_Shift_Ins p.H425Tfs*2 0.31 TCGA-CV-6955-01 7 121942917 121942917 G A FEZF1 Silent p.T335T 0.29 TCGA-CV-6955-01 7 143175518 143175518 A - TAS2R41 Frame_Shift_Del p.K185Nfs*19 0.11 TCGA-CV-6955-01 7 148777738 148777738 C G ZNF786 Missense_Mutation p.Q30H 0.05 deleterious(0) probably_damaging(1) TCGA-CV-6955-01 7 15240926 15240926 G C AGMO Missense_Mutation p.S441C 0.13 deleterious(0) possibly_damaging(0.499) TCGA-CV-6955-01 7 6085734 6085734 T A EIF2AK1 Missense_Mutation p.I200F 0.18 deleterious(0) possibly_damaging(0.728) TCGA-CV-6955-01 7 81714097 81714097 G A CACNA2D1 Nonsense_Mutation p.R216* 0.20 TCGA-CV-6955-01 7 98446224 98446224 C T TMEM130 Silent p.Q367Q 0.15 TCGA-CV-6955-01 7 99027337 99027337 C G ATP5J2-PTCD1 Missense_Mutation p.Q278H 0.06 deleterious(0.02) benign(0.43) TCGA-CV-6955-01 7 99654858 99654858 G A ZSCAN21 Missense_Mutation p.E77K 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-CV-6955-01 8 11188846 11188846 C T SLC35G5 Silent p.C77C 0.10 TCGA-CV-6955-01 8 125498991 125498991 C T RNF139 Silent p.I367I 0.08 TCGA-CV-6955-01 8 38148029 38148029 C T WHSC1L1 Missense_Mutation p.E1028K 0.04 tolerated(0.06) benign(0.278) TCGA-CV-6955-01 8 77618162 77618162 C T ZFHX4 Silent p.I613I 0.07 TCGA-CV-6955-01 9 117692669 117692669 C T TNFSF8 5'UTR 0.12 TCGA-CV-6955-01 9 136220669 136220669 G A SURF1 Silent p.G150G 0.04 TCGA-CV-6955-01 9 139399790 139399790 C G NOTCH1 Missense_Mutation p.D1520H 0.22 deleterious(0) probably_damaging(0.99) TCGA-CV-6955-01 9 139412284 139412284 T G NOTCH1 Missense_Mutation p.N454T 0.10 deleterious(0) probably_damaging(1) TCGA-CV-6955-01 9 139418203 139418204 - T NOTCH1 Frame_Shift_Ins p.E124Gfs*19 0.17 TCGA-CV-6955-01 9 140991032 140991032 C T CACNA1B Missense_Mutation p.R1731W 0.43 deleterious(0) probably_damaging(0.998) TCGA-CV-6955-01 9 35609464 35609464 C A TESK1 Silent p.R536R 0.38 TCGA-CV-6955-01 X 119660660 119660660 C T CUL4B Missense_Mutation p.E900K 0.31 tolerated(0.08) possibly_damaging(0.533) TCGA-CV-6955-01 X 120007815 120007815 C A CT47B1 Nonsense_Mutation p.E279* 0.22 TCGA-CV-6955-01 X 122820424 122820424 G C THOC2 Missense_Mutation p.L248V 0.10 deleterious(0) probably_damaging(0.925) TCGA-CV-6955-01 X 135429169 135429169 G T GPR112 Missense_Mutation p.A1102S 0.05 tolerated(0.05) benign(0.079) TCGA-CV-6955-01 X 139586097 139586097 C G SOX3 Missense_Mutation p.E377Q 0.19 deleterious(0.03) benign(0.077) TCGA-CV-6955-01 X 152821580 152821580 C T ATP2B3 Missense_Mutation p.T711M 0.21 deleterious(0) probably_damaging(0.966) TCGA-CV-6955-01 X 16863980 16863980 C G RBBP7 Missense_Mutation p.E438Q 0.08 deleterious(0) benign(0.177) TCGA-CV-6955-01 X 17819471 17819471 G T RAI2 Silent p.P220P 0.40 TCGA-CV-6955-01 X 34961653 34961653 C T FAM47B Silent p.L235L 0.05 TCGA-CV-6955-01 X 45606471 45606471 C T MIR222 RNA 0.16 TCGA-CV-6955-01 X 70787880 70787880 C T OGT Silent p.L960L 0.12 TCGA-CV-6955-01 X 83723803 83723803 C T HDX Missense_Mutation p.E310K 0.16 deleterious(0) probably_damaging(0.989) TCGA-CV-6956-01 10 115481445 115481445 G A CASP7 Missense_Mutation p.E128K 0.35 tolerated(0.65) benign(0.171) TCGA-CV-6956-01 10 127462419 127462419 G T MMP21 Silent p.I226I 0.38 TCGA-CV-6956-01 10 127462420 127462420 A T MMP21 Missense_Mutation p.I226N 0.38 deleterious(0) probably_damaging(0.994) TCGA-CV-6956-01 10 15726024 15726024 C A ITGA8 Nonsense_Mutation p.E183* 0.25 TCGA-CV-6956-01 10 21804965 21804965 C G SKIDA1 Missense_Mutation p.R596P 0.16 tolerated(0.07) unknown(0) TCGA-CV-6956-01 10 27366291 27366291 C T ANKRD26 Silent p.S351S 0.38 TCGA-CV-6956-01 10 28196653 28196653 G A ARMC4 Missense_Mutation p.P850L 0.30 deleterious(0) possibly_damaging(0.796) TCGA-CV-6956-01 10 43650762 43650762 G A CSGALNACT2 Silent p.E55E 0.25 TCGA-CV-6956-01 10 46999149 46999149 G C GPRIN2 Missense_Mutation p.W90S 0.16 tolerated(0.19) probably_damaging(0.999) TCGA-CV-6956-01 10 70962246 70962246 C G SUPV3L1 Missense_Mutation p.L524V 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-6956-01 10 92509226 92509226 G C HTR7 Missense_Mutation p.A222G 0.42 tolerated(0.27) benign(0.282) TCGA-CV-6956-01 11 118267058 118267058 C T UBE4A Missense_Mutation p.P1042L 0.35 deleterious(0) probably_damaging(1) TCGA-CV-6956-01 11 118267059 118267059 C T UBE4A Silent p.P1042P 0.34 TCGA-CV-6956-01 11 121444948 121444948 A T SORL1 Splice_Site p.X1113_splice 0.33 TCGA-CV-6956-01 11 122928593 122928593 T A HSPA8 Missense_Mutation p.K597I 0.36 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-CV-6956-01 11 123847492 123847492 T A OR10S1 Missense_Mutation p.T303S 0.34 tolerated(0.25) possibly_damaging(0.842) TCGA-CV-6956-01 11 124120549 124120549 C T OR8G1 Silent p.L43L 0.34 TCGA-CV-6956-01 11 130005458 130005458 A G APLP2 Missense_Mutation p.D562G 0.36 tolerated(0.06) possibly_damaging(0.706) TCGA-CV-6956-01 11 18257396 18257396 C T SAA4 Silent p.K26K 0.23 TCGA-CV-6956-01 11 20083856 20083856 A G NAV2 Missense_Mutation p.H1668R 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-CV-6956-01 11 55032387 55032387 C T TRIM48 Missense_Mutation p.S19F 0.30 tolerated(0.06) possibly_damaging(0.568) TCGA-CV-6956-01 11 55606573 55606573 C G OR5D16 Missense_Mutation p.L116V 0.36 deleterious(0.05) benign(0.32) TCGA-CV-6956-01 11 64897499 64897499 C A SYVN1 Missense_Mutation p.M461I 0.32 tolerated(0.12) unknown(0) TCGA-CV-6956-01 11 75277799 75277799 C T SERPINH1 Silent p.Y135Y 0.39 TCGA-CV-6956-01 12 101520815 101520815 G C ANO4 Missense_Mutation p.K910N 0.26 tolerated(0.08) possibly_damaging(0.837) TCGA-CV-6956-01 12 109017613 109017613 C T SELPLG Silent p.T173T 0.40 TCGA-CV-6956-01 12 111746236 111746236 G A CUX2 Missense_Mutation p.M388I 0.39 tolerated(0.16) benign(0) TCGA-CV-6956-01 12 121000765 121000765 G T RNF10 Silent p.L382L 0.36 TCGA-CV-6956-01 12 121434487 121434487 T A HNF1A Silent p.G417G 0.36 TCGA-CV-6956-01 12 122361573 122361573 G A WDR66 Missense_Mutation p.D142N 0.27 tolerated_low_confidence(0.81) benign(0.001) TCGA-CV-6956-01 12 133249289 133249289 T C POLE Missense_Mutation p.E537G 0.32 deleterious(0) probably_damaging(1) TCGA-CV-6956-01 12 14706306 14706306 C G PLBD1 Missense_Mutation p.K52N 0.40 deleterious(0.04) benign(0.081) TCGA-CV-6956-01 12 21467564 21467564 C G SLCO1A2 Missense_Mutation p.R85T 0.33 deleterious(0) probably_damaging(1) TCGA-CV-6956-01 12 26808679 26808679 G A ITPR2 Missense_Mutation p.P851S 0.36 tolerated(0.17) benign(0.285) TCGA-CV-6956-01 12 49319149 49319149 C A FKBP11 Silent p.A21A 0.10 TCGA-CV-6956-01 12 53241878 53241878 C T KRT78 Missense_Mutation p.V138I 0.25 deleterious(0.04) benign(0.309) TCGA-CV-6956-01 12 57431381 57431381 C G MYO1A Missense_Mutation p.G669A 0.31 tolerated(0.14) benign(0.004) TCGA-CV-6956-01 12 58088661 58088661 G A OS9 Silent p.G97G 0.31 TCGA-CV-6956-01 12 58218400 58218400 C G CTDSP2 Intron 0.43 TCGA-CV-6956-01 12 64521813 64521813 G A SRGAP1 Missense_Mutation p.D905N 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.821) TCGA-CV-6956-01 12 99020188 99020188 T A IKBIP Missense_Mutation p.R218S 0.28 deleterious(0.03) benign(0.093) TCGA-CV-6956-01 13 109475526 109475526 T A MYO16 Missense_Mutation p.W311R 0.25 deleterious(0) probably_damaging(0.954) TCGA-CV-6956-01 13 111919973 111919973 T C ARHGEF7 Silent p.Y364Y 0.32 TCGA-CV-6956-01 13 25448319 25448319 A T RNF17 Missense_Mutation p.E1505D 0.45 tolerated(0.11) probably_damaging(0.973) TCGA-CV-6956-01 13 33111164 33111164 T A N4BP2L2 Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0) benign(0.018) TCGA-CV-6956-01 13 35619136 35619136 G A NBEA Silent p.K193K 0.36 TCGA-CV-6956-01 13 35619137 35619137 G A NBEA Missense_Mutation p.E194K 0.38 deleterious(0) probably_damaging(0.997) TCGA-CV-6956-01 13 53419596 53419596 C T PCDH8 Missense_Mutation p.A935T 0.08 tolerated(0.18) probably_damaging(0.994) TCGA-CV-6956-01 13 70681868 70681868 G A KLHL1 5'UTR 0.42 TCGA-CV-6956-01 13 77632376 77632376 G A MYCBP2 Missense_Mutation p.L4398F 0.32 possibly_damaging(0.529) TCGA-CV-6956-01 13 88329860 88329860 C A SLITRK5 Silent p.P739P 0.26 TCGA-CV-6956-01 13 95055462 95055462 G T GPC6 Silent p.L553L 0.13 TCGA-CV-6956-01 13 99566619 99566619 C T DOCK9 Missense_Mutation p.G308D 0.28 tolerated(0.64) benign(0.038) TCGA-CV-6956-01 14 103148296 103148296 A G RCOR1 Silent p.Q142Q 0.40 TCGA-CV-6956-01 14 20711094 20711094 C T OR11H4 Silent p.T48T 0.32 TCGA-CV-6956-01 14 21955828 21955828 G A TOX4 Silent p.G98G 0.37 TCGA-CV-6956-01 14 51259494 51259494 G A NIN Missense_Mutation p.T124M 0.36 deleterious(0) possibly_damaging(0.866) TCGA-CV-6956-01 14 61917604 61917604 C T PRKCH Silent p.S249S 0.40 TCGA-CV-6956-01 14 78161201 78161201 C T ALKBH1 Nonsense_Mutation p.W112* 0.35 TCGA-CV-6956-01 14 94464411 94464411 G A LINC00521 RNA 0.25 TCGA-CV-6956-01 15 23006728 23006729 - G NIPA2 Frame_Shift_Ins p.V193Sfs*42 0.23 TCGA-CV-6956-01 15 23890016 23890016 C T MAGEL2 Nonsense_Mutation p.W355* 0.40 TCGA-CV-6956-01 15 34638159 34638159 G T NUTM1 5'UTR 0.36 TCGA-CV-6956-01 15 34640628 34640628 C T NUTM1 Missense_Mutation p.P159S 0.27 tolerated(0.14) benign(0.262) TCGA-CV-6956-01 15 42560198 42560198 T C TMEM87A Missense_Mutation p.I80V 0.33 tolerated(0.4) benign(0.003) TCGA-CV-6956-01 15 50906377 50906377 G A TRPM7 Silent p.C526C 0.33 TCGA-CV-6956-01 15 50906378 50906378 C T TRPM7 Missense_Mutation p.C526Y 0.32 deleterious(0.01) probably_damaging(0.923) TCGA-CV-6956-01 15 60741642 60741642 C G NARG2 Missense_Mutation p.L508F 0.35 tolerated(0.7) benign(0.352) TCGA-CV-6956-01 15 75498857 75498857 T C C15orf39 Silent p.D156D 0.36 TCGA-CV-6956-01 15 75983101 75983101 G A CSPG4 Missense_Mutation p.T102M 0.32 tolerated(0.22) benign(0.017) TCGA-CV-6956-01 15 89453067 89453074 GTGTACGA - MFGE8 Frame_Shift_Del p.S52Lfs*5 0.33 TCGA-CV-6956-01 16 17292261 17292261 T A XYLT1 Missense_Mutation p.Y366F 0.33 deleterious(0.03) possibly_damaging(0.685) TCGA-CV-6956-01 16 20797459 20797459 T G ACSM3 Silent p.P401P 0.42 TCGA-CV-6956-01 16 23563530 23563530 C G EARS2 Missense_Mutation p.D79H 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-6956-01 16 2581136 2581136 C T CEMP1 5'UTR 0.31 TCGA-CV-6956-01 16 29820025 29820025 C G MAZ Missense_Mutation p.S414R 0.41 deleterious(0) possibly_damaging(0.455) TCGA-CV-6956-01 16 30958233 30958233 C G FBXL19 Missense_Mutation p.P624A 0.23 tolerated(0.18) possibly_damaging(0.857) TCGA-CV-6956-01 17 17399294 17399294 G T RASD1 Missense_Mutation p.R68S 0.18 deleterious(0) probably_damaging(0.946) TCGA-CV-6956-01 17 18833957 18833957 C T PRPSAP2 Silent p.I352I 0.32 TCGA-CV-6956-01 17 20108048 20108048 T C SPECC1 Missense_Mutation p.L229P 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-CV-6956-01 17 34943490 34943490 C T GGNBP2 Missense_Mutation p.H569Y 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-CV-6956-01 17 38910653 38910653 T G KRT25 Missense_Mutation p.D166A 0.29 tolerated(0.05) benign(0.173) TCGA-CV-6956-01 17 40823110 40823110 C G PLEKHH3 Silent p.R441R 0.35 TCGA-CV-6956-01 17 40823111 40823111 C T PLEKHH3 Missense_Mutation p.R441Q 0.34 tolerated(0.24) unknown(0) TCGA-CV-6956-01 17 53063572 53063572 G T STXBP4 5'UTR 0.33 TCGA-CV-6956-01 17 60821758 60821758 C A MARCH10 Missense_Mutation p.V172L 0.35 deleterious(0.01) benign(0.055) TCGA-CV-6956-01 17 61776623 61776623 G - LIMD2 Frame_Shift_Del p.S13Lfs*24 0.31 TCGA-CV-6956-01 17 62290905 62290905 T A TEX2 Missense_Mutation p.T225S 0.40 tolerated(0.17) possibly_damaging(0.492) TCGA-CV-6956-01 17 66267356 66267356 G A SLC16A6 Silent p.I315I 0.32 TCGA-CV-6956-01 17 7251469 7251469 C G ACAP1 Silent p.V479V 0.23 TCGA-CV-6956-01 17 7579356 7579359 GACG - TP53 Frame_Shift_Del p.R110Wfs*12 0.63 TCGA-CV-6956-01 17 7839728 7839728 G C CNTROB Missense_Mutation p.E213D 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-CV-6956-01 18 13826439 13826439 C A MC5R Silent p.A225A 0.32 TCGA-CV-6956-01 18 22807174 22807174 C T ZNF521 Silent p.R236R 0.16 TCGA-CV-6956-01 18 55283091 55283091 C A NARS Missense_Mutation p.W70C 0.28 tolerated(0.1) benign(0.002) TCGA-CV-6956-01 19 10225320 10225320 C G PPAN-P2RY11 Missense_Mutation p.P764R 0.20 deleterious_low_confidence(0) benign(0.04) TCGA-CV-6956-01 19 12088200 12088200 G T ZNF763 Missense_Mutation p.D52Y 0.34 deleterious(0.04) probably_damaging(0.979) TCGA-CV-6956-01 19 14231247 14231247 C A ASF1B 3'UTR 0.52 TCGA-CV-6956-01 19 15222125 15222125 T C SYDE1 Missense_Mutation p.V431A 0.59 deleterious(0.02) probably_damaging(0.99) TCGA-CV-6956-01 19 19766741 19766741 C G ATP13A1 Silent p.P405P 0.20 TCGA-CV-6956-01 19 36368688 36368688 G A APLP1 Missense_Mutation p.E505K 0.28 tolerated(0.07) probably_damaging(0.996) TCGA-CV-6956-01 19 38057174 38057174 C T ZNF571 Silent p.V52V 0.23 TCGA-CV-6956-01 19 43529018 43529018 G A PSG11 Silent p.D85D 0.23 TCGA-CV-6956-01 19 43920656 43920656 T C TEX101 Missense_Mutation p.C132R 0.40 deleterious(0) probably_damaging(1) TCGA-CV-6956-01 19 4538051 4538051 C T LRG1 Silent p.Q315Q 0.51 TCGA-CV-6956-01 19 45971882 45971882 C T FOSB Missense_Mutation p.S13F 0.44 deleterious(0) possibly_damaging(0.485) TCGA-CV-6956-01 19 49497072 49497072 C G RUVBL2 5'UTR 0.17 TCGA-CV-6956-01 19 5211665 5211665 G A PTPRS Silent p.L1724L 0.23 TCGA-CV-6956-01 19 53644866 53644866 T A ZNF347 Missense_Mutation p.E406D 0.39 tolerated(0.08) benign(0.092) TCGA-CV-6956-01 19 53668656 53668688 TTGCAAGGTATGAATTGTGCCTGAAGACCTTGC - ZNF665 In_Frame_Del p.G352_K363delinsE 0.10 TCGA-CV-6956-01 19 54973750 54973750 T - LENG9 Frame_Shift_Del p.E342Dfs*14 0.31 TCGA-CV-6956-01 19 56303779 56303779 A G NLRP11 Missense_Mutation p.F801L 0.10 tolerated(1) benign(0) TCGA-CV-6956-01 19 57133864 57133864 G T ZNF71 Silent p.V403V 0.25 TCGA-CV-6956-01 19 58132578 58132578 G T ZNF134 Missense_Mutation p.R364M 0.51 deleterious(0) probably_damaging(0.997) TCGA-CV-6956-01 19 58199747 58199747 C T ZNF551 3'UTR 0.53 TCGA-CV-6956-01 19 9088493 9088493 C G MUC16 Missense_Mutation p.D1108H 0.31 unknown(0) TCGA-CV-6956-01 19 9452268 9452268 C G ZNF559 Intron 0.56 TCGA-CV-6956-01 1 144822011 144822011 C A NBPF9 Silent p.A317A 0.37 TCGA-CV-6956-01 1 150478094 150478094 C A TARS2 Missense_Mutation p.L641M 0.38 tolerated(0.09) probably_damaging(0.985) TCGA-CV-6956-01 1 151150569 151150569 C T VPS72 Silent p.R205R 0.24 TCGA-CV-6956-01 1 155223908 155223908 A T FAM189B Silent p.A120A 0.43 TCGA-CV-6956-01 1 160466073 160466073 T G SLAMF6 Missense_Mutation p.T54P 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-CV-6956-01 1 16254612 16254612 A G SPEN Missense_Mutation p.Y626C 0.44 probably_damaging(0.998) TCGA-CV-6956-01 1 169576215 169576215 G C SELP Missense_Mutation p.N497K 0.49 tolerated(0.49) benign(0.067) TCGA-CV-6956-01 1 183518407 183518407 G T SMG7 Missense_Mutation p.G940V 0.40 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-CV-6956-01 1 207760880 207760880 G A CR1 Missense_Mutation p.V1894I 0.36 deleterious(0.02) benign(0.33) TCGA-CV-6956-01 1 208072364 208072364 G A CD34 Missense_Mutation p.P157L 0.29 tolerated(0.3) benign(0.396) TCGA-CV-6956-01 1 211751730 211751730 G A SLC30A1 Silent p.I75I 0.46 TCGA-CV-6956-01 1 222843263 222843263 T C AIDA Missense_Mutation p.H298R 0.35 tolerated(0.05) benign(0.179) TCGA-CV-6956-01 1 227842404 227842404 A G ZNF678 Silent p.K151K 0.24 TCGA-CV-6956-01 1 237802492 237802492 G T RYR2 Missense_Mutation p.S2369I 0.26 benign(0.027) TCGA-CV-6956-01 1 248636651 248636651 C T OR2T3 5'UTR 0.16 TCGA-CV-6956-01 1 31210496 31210496 C A LAPTM5 Missense_Mutation p.M187I 0.36 tolerated(0.4) benign(0.004) TCGA-CV-6956-01 1 36372612 36372612 T G AGO1 Missense_Mutation p.Y492D 0.42 deleterious(0.04) possibly_damaging(0.843) TCGA-CV-6956-01 1 57257988 57257988 G T C1orf168 Silent p.A166A 0.36 TCGA-CV-6956-01 1 85491754 85491754 G T MCOLN3 Missense_Mutation p.F321L 0.41 tolerated(0.13) benign(0.18) TCGA-CV-6956-01 1 97915726 97915726 G C DPYD Silent p.P598P 0.34 TCGA-CV-6956-01 20 19981537 19981537 G T RIN2 Missense_Mutation p.G931V 0.26 deleterious_low_confidence(0.02) probably_damaging(0.951) TCGA-CV-6956-01 20 23614554 23614554 T A CST3 Nonstop_Mutation p.*147Lext*60 0.23 TCGA-CV-6956-01 20 2845938 2845938 C T VPS16 Missense_Mutation p.R717C 0.27 deleterious(0) probably_damaging(0.943) TCGA-CV-6956-01 20 3147717 3147717 C T LZTS3 Silent p.P31P 0.48 TCGA-CV-6956-01 20 60966010 60966012 CTT - CABLES2 3'UTR 0.28 TCGA-CV-6956-01 21 11058238 11058238 G A BAGE2 RNA 0.12 TCGA-CV-6956-01 21 16339770 16339770 T A NRIP1 Missense_Mutation p.E248D 0.29 tolerated(0.06) probably_damaging(0.993) TCGA-CV-6956-01 21 45479008 45479008 A T TRAPPC10 Missense_Mutation p.M235L 0.25 deleterious(0) possibly_damaging(0.722) TCGA-CV-6956-01 22 32909655 32909655 C G SYN3 3'UTR 0.44 TCGA-CV-6956-01 22 32909744 32909744 C G SYN3 Missense_Mutation p.D560H 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-6956-01 22 40364132 40364132 G T GRAP2 Missense_Mutation p.M182I 0.42 tolerated(0.55) benign(0.002) TCGA-CV-6956-01 22 45281799 45281799 C T PHF21B Missense_Mutation p.G406D 0.39 deleterious(0) benign(0.342) TCGA-CV-6956-01 22 46931727 46931727 G T CELSR1 Silent p.I447I 0.30 TCGA-CV-6956-01 2 108478103 108478103 A G RGPD4 Silent p.E704E 0.26 TCGA-CV-6956-01 2 128384629 128384629 T A MYO7B Missense_Mutation p.L1406Q 0.37 deleterious(0) benign(0.372) TCGA-CV-6956-01 2 135851202 135851202 A T RAB3GAP1 Missense_Mutation p.M101L 0.33 tolerated(0.39) benign(0.008) TCGA-CV-6956-01 2 152397296 152397296 G T NEB Missense_Mutation p.A6901D 0.36 probably_damaging(1) TCGA-CV-6956-01 2 166003416 166003416 G A SCN3A Nonsense_Mutation p.R502* 0.35 TCGA-CV-6956-01 2 179457367 179457367 C A TTN Missense_Mutation p.D19789Y 0.40 TCGA-CV-6956-01 2 183641862 183641862 A T DNAJC10 3'UTR 0.30 TCGA-CV-6956-01 2 189458684 189458684 A T GULP1 Silent p.G287G 0.26 TCGA-CV-6956-01 2 211473156 211473156 C T CPS1 Missense_Mutation p.S761F 0.36 deleterious(0) possibly_damaging(0.724) TCGA-CV-6956-01 2 217124378 217124378 G A MARCH4 Missense_Mutation p.S297L 0.48 deleterious(0) benign(0.058) TCGA-CV-6956-01 2 238287849 238287849 G C COL6A3 Missense_Mutation p.L643V 0.31 probably_damaging(0.999) TCGA-CV-6956-01 2 241069334 241069334 C T MYEOV2 Silent p.S125S 0.35 TCGA-CV-6956-01 2 26702480 26702480 G T OTOF Silent p.R652R 0.38 TCGA-CV-6956-01 2 27282380 27282380 C T AGBL5 Intron 0.37 TCGA-CV-6956-01 2 54080317 54080317 T C GPR75 Missense_Mutation p.E526G 0.29 tolerated_low_confidence(0.06) benign(0.002) TCGA-CV-6956-01 2 64780007 64780007 C T AFTPH Missense_Mutation p.H467Y 0.34 tolerated(0.14) possibly_damaging(0.535) TCGA-CV-6956-01 2 74652827 74652827 G C WDR54 Nonstop_Mutation p.*335Sext*? 0.42 TCGA-CV-6956-01 2 90249391 90249391 C T IGKV1D-43 Missense_Mutation p.T116I 0.27 tolerated(0.32) benign(0.005) TCGA-CV-6956-01 3 124369736 124369736 C T KALRN Missense_Mutation p.P7S 0.30 deleterious(0) benign(0.309) TCGA-CV-6956-01 3 136141433 136141433 T C STAG1 Missense_Mutation p.Q619R 0.27 deleterious(0.05) possibly_damaging(0.552) TCGA-CV-6956-01 3 140281753 140281753 C A CLSTN2 Nonsense_Mutation p.C771* 0.21 TCGA-CV-6956-01 3 17052859 17052859 G A PLCL2 Missense_Mutation p.R548K 0.41 deleterious(0.01) probably_damaging(0.983) TCGA-CV-6956-01 3 178916946 178916946 G C PIK3CA Missense_Mutation p.K111N 0.14 deleterious(0) probably_damaging(0.989) TCGA-CV-6956-01 3 182897459 182897459 C T MCF2L2 Missense_Mutation p.D1043N 0.50 deleterious(0.05) benign(0.157) TCGA-CV-6956-01 3 186518927 186518927 T G RFC4 Missense_Mutation p.K63N 0.18 deleterious(0.01) possibly_damaging(0.709) TCGA-CV-6956-01 3 196735690 196735690 C T MFI2 Missense_Mutation p.G558S 0.30 deleterious(0) probably_damaging(1) TCGA-CV-6956-01 3 25665146 25665146 T - TOP2B Frame_Shift_Del p.I858Ffs*3 0.22 TCGA-CV-6956-01 3 75477008 75477008 C T FAM86DP RNA 0.70 TCGA-CV-6956-01 3 89456492 89456492 C G EPHA3 Silent p.L556L 0.44 TCGA-CV-6956-01 3 95374086 95374086 C T MTHFD2P1 RNA 0.15 TCGA-CV-6956-01 3 97439174 97439174 G C EPHA6 Missense_Mutation p.D952H 0.43 deleterious(0) probably_damaging(1) TCGA-CV-6956-01 4 111398004 111398004 C A ENPEP Missense_Mutation p.P145Q 0.31 deleterious(0.02) probably_damaging(0.992) TCGA-CV-6956-01 4 119649746 119649746 A T SEC24D Silent p.I976I 0.23 TCGA-CV-6956-01 4 151168815 151168815 G A DCLK2 Silent p.P630P 0.31 TCGA-CV-6956-01 4 167675599 167675599 A G SPOCK3 Intron 0.26 TCGA-CV-6956-01 4 177077229 177077229 G T WDR17 Splice_Site p.X845_splice 0.25 TCGA-CV-6956-01 4 17910776 17910776 T A LCORL Missense_Mutation p.E208V 0.39 deleterious(0.03) probably_damaging(0.991) TCGA-CV-6956-01 4 187538253 187538253 A C FAT1 Missense_Mutation p.L2994R 0.37 probably_damaging(0.93) TCGA-CV-6956-01 4 20619185 20619185 G T SLIT2 Missense_Mutation p.K1420N 0.45 tolerated(0.18) benign(0.021) TCGA-CV-6956-01 4 76407873 76407873 G C RCHY1 Missense_Mutation p.L221V 0.28 deleterious(0.02) benign(0.285) TCGA-CV-6956-01 4 9784899 9784899 A C DRD5 Missense_Mutation p.N416H 0.28 tolerated(1) benign(0.009) TCGA-CV-6956-01 5 128302163 128302163 G A SLC27A6 Silent p.L111L 0.55 TCGA-CV-6956-01 5 13928288 13928288 C A DNAH5 Splice_Site p.X65_splice 0.23 TCGA-CV-6956-01 5 140769259 140769259 C T PCDHGB4 Missense_Mutation p.S603F 0.55 deleterious(0.01) probably_damaging(0.995) TCGA-CV-6956-01 5 140857945 140857945 G A PCDHGC3 Silent p.P754P 0.58 TCGA-CV-6956-01 5 149503837 149503837 G T PDGFRB Missense_Mutation p.L667M 0.47 deleterious(0) probably_damaging(1) TCGA-CV-6956-01 5 149562339 149562339 C A CDX1 Silent p.R152R 0.56 TCGA-CV-6956-01 5 175956543 175956543 G A RNF44 Missense_Mutation p.H373Y 0.47 deleterious(0.05) benign(0.139) TCGA-CV-6956-01 5 176709523 176709523 C T NSD1 Nonsense_Mutation p.R1984* 0.58 TCGA-CV-6956-01 5 180666087 180666087 G A GNB2L1 Missense_Mutation p.L206F 0.49 deleterious(0.02) probably_damaging(0.996) TCGA-CV-6956-01 5 22143040 22143040 C T CDH12 Intron 0.63 TCGA-CV-6956-01 5 37048756 37048756 A G NIPBL Missense_Mutation p.M2248V 0.28 deleterious(0) probably_damaging(0.958) TCGA-CV-6956-01 5 38482196 38482196 C T LIFR Missense_Mutation p.R932H 0.14 tolerated(0.22) benign(0.001) TCGA-CV-6956-01 5 90106737 90106737 C T GPR98 Silent p.F5220F 0.47 TCGA-CV-6956-01 5 92923999 92923999 C T NR2F1 Silent p.A280A 0.51 TCGA-CV-6956-01 6 117198535 117198535 C T RFX6 Silent p.L33L 0.71 TCGA-CV-6956-01 6 119345399 119345399 C G FAM184A Missense_Mutation p.D247H 0.26 deleterious(0) possibly_damaging(0.894) TCGA-CV-6956-01 6 150263229 150263229 C A ULBP2 Silent p.T7T 0.70 TCGA-CV-6956-01 6 165862443 165862443 T A PDE10A Silent p.A123A 0.35 TCGA-CV-6956-01 6 27778004 27778004 G A HIST1H3H Silent p.E51E 0.33 TCGA-CV-6956-01 6 30546284 30546284 G C ABCF1 Missense_Mutation p.S140T 0.80 deleterious_low_confidence(0.01) benign(0.097) TCGA-CV-6956-01 6 32947816 32947816 G T BRD2 Nonsense_Mutation p.E720* 0.06 TCGA-CV-6956-01 6 38885712 38885712 A G DNAH8 Silent p.A3223A 0.06 TCGA-CV-6956-01 6 49928037 49928037 C T DEFB114 Missense_Mutation p.E60K 0.33 deleterious_low_confidence(0.02) benign(0.005) TCGA-CV-6956-01 6 66205124 66205124 C A EYS Missense_Mutation p.L60F 0.16 tolerated_low_confidence(0.47) possibly_damaging(0.566) TCGA-CV-6956-01 6 86324795 86324795 G A SYNCRIP Silent p.P517P 0.64 TCGA-CV-6956-01 7 107763633 107763633 T A LAMB4 5'UTR 0.35 TCGA-CV-6956-01 7 1197827 1197827 T G ZFAND2A Missense_Mutation p.K8Q 0.17 tolerated(0.37) possibly_damaging(0.655) TCGA-CV-6956-01 7 127225333 127225333 T A GCC1 5'UTR 0.50 TCGA-CV-6956-01 7 141730195 141730195 G A MGAM Missense_Mutation p.E419K 0.38 tolerated(0.58) benign(0.004) TCGA-CV-6956-01 7 157959789 157959789 G A PTPRN2 Silent p.A248A 0.52 TCGA-CV-6956-01 7 47898336 47898336 C G PKD1L1 Missense_Mutation p.E1433Q 0.20 tolerated(0.06) possibly_damaging(0.513) TCGA-CV-6956-01 7 95157465 95157465 C A ASB4 Silent p.A276A 0.37 TCGA-CV-6956-01 8 103236307 103236307 A G RRM2B Silent p.L173L 0.44 TCGA-CV-6956-01 8 110346323 110346323 C T NUDCD1 5'UTR 0.36 TCGA-CV-6956-01 8 110461669 110461669 T A PKHD1L1 Missense_Mutation p.L2043H 0.55 tolerated(0.39) benign(0.113) TCGA-CV-6956-01 8 121256222 121256222 C T COL14A1 Silent p.V818V 0.09 TCGA-CV-6956-01 8 16884802 16884802 G T MICU3 Missense_Mutation p.R5L 0.37 deleterious_low_confidence(0) benign(0.006) TCGA-CV-6956-01 8 33451188 33451188 C T DUSP26 Missense_Mutation p.R100Q 0.22 tolerated(0.58) benign(0.011) TCGA-CV-6956-01 8 70978695 70978695 C T PRDM14 Missense_Mutation p.G320S 0.43 tolerated(0.73) benign(0.119) TCGA-CV-6956-01 8 94821068 94821068 G A TMEM67 Missense_Mutation p.E814K 0.17 deleterious(0.04) probably_damaging(0.933) TCGA-CV-6956-01 8 98289495 98289495 G A TSPYL5 Missense_Mutation p.S193L 0.20 tolerated(0.42) benign(0.002) TCGA-CV-6956-01 9 100403139 100403139 C G NCBP1 Missense_Mutation p.S33C 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-CV-6956-01 9 125273891 125273891 G A OR1J2 Missense_Mutation p.D271N 0.32 tolerated_low_confidence(0.2) benign(0.107) TCGA-CV-6956-01 9 130482360 130482360 C T TTC16 Nonsense_Mutation p.Q144* 0.46 TCGA-CV-6956-01 9 139366454 139366454 C T SEC16A Missense_Mutation p.S1226N 0.41 deleterious(0) probably_damaging(0.999) TCGA-CV-6956-01 9 140330690 140330690 G A ENTPD8 Silent p.L275L 0.26 TCGA-CV-6956-01 9 289552 289552 C T DOCK8 Silent p.Y125Y 0.17 TCGA-CV-6956-01 9 93650843 93650843 G A SYK Missense_Mutation p.R590Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-6956-01 X 125686264 125686264 G T DCAF12L1 Missense_Mutation p.Q110K 0.65 deleterious(0) possibly_damaging(0.715) TCGA-CV-6956-01 X 128599869 128599869 T G SMARCA1 Missense_Mutation p.E923D 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6956-01 X 132438794 132438794 G A GPC4 Silent p.N417N 0.67 TCGA-CV-6956-01 X 151336735 151336735 C T GABRA3 Missense_Mutation p.E482K 0.71 tolerated(0.08) benign(0.078) TCGA-CV-6956-01 X 152825277 152825277 G A ATP2B3 Missense_Mutation p.E906K 0.76 tolerated(0.05) benign(0.395) TCGA-CV-6956-01 X 30327172 30327172 C A NR0B1 Silent p.P103P 0.55 TCGA-CV-6956-01 X 51079104 51079104 A T NUDT10 3'UTR 0.86 TCGA-CV-6959-01 10 13489310 13489310 G A BEND7 Missense_Mutation p.A346V 0.16 tolerated_low_confidence(0.09) benign(0.059) TCGA-CV-6959-01 10 294467 294467 G C ZMYND11 Missense_Mutation p.K473N 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CV-6959-01 10 50820226 50820226 C T SLC18A3 Silent p.S480S 0.20 TCGA-CV-6959-01 10 70451332 70451332 C A TET1 Missense_Mutation p.Q2058K 0.19 tolerated(0.84) benign(0.298) TCGA-CV-6959-01 11 20119140 20119140 C G NAV2 Silent p.V2069V 0.14 TCGA-CV-6959-01 11 224206 224206 G A SIRT3 Missense_Mutation p.P281S 0.15 tolerated(0.22) benign(0.035) TCGA-CV-6959-01 12 122294232 122294232 G T HPD Missense_Mutation p.Q108K 0.27 tolerated(0.84) benign(0.001) TCGA-CV-6959-01 12 12303861 12303861 C T LRP6 Missense_Mutation p.R968Q 0.31 deleterious(0.01) benign(0.237) TCGA-CV-6959-01 12 40716168 40716168 G C LRRK2 Missense_Mutation p.E1789Q 0.15 deleterious(0) probably_damaging(0.952) TCGA-CV-6959-01 12 52714887 52714887 G T KRT83 Missense_Mutation p.P78H 0.28 deleterious(0) probably_damaging(0.926) TCGA-CV-6959-01 14 81259101 81259101 T C CEP128 Intron 0.56 TCGA-CV-6959-01 15 25223613 25223613 T A SNRPN 3'UTR 0.15 TCGA-CV-6959-01 15 57732649 57732649 C T CGNL1 Silent p.L559L 0.56 TCGA-CV-6959-01 15 73635796 73635796 G A HCN4 Missense_Mutation p.T380M 0.14 deleterious(0) possibly_damaging(0.488) TCGA-CV-6959-01 16 55364218 55364218 C T IRX6 3'UTR 0.15 TCGA-CV-6959-01 16 77465453 77465453 G A ADAMTS18 Silent p.H78H 0.16 TCGA-CV-6959-01 17 31094740 31094741 CT - MYO1D Frame_Shift_Del p.R248Sfs*4 0.30 TCGA-CV-6959-01 17 35299527 35299527 C T LHX1 Missense_Mutation p.R236W 0.12 deleterious(0) probably_damaging(0.946) TCGA-CV-6959-01 17 6330371 6330371 C T AIPL1 Missense_Mutation p.A158T 0.20 tolerated(0.56) benign(0.313) TCGA-CV-6959-01 17 7414779 7414779 G C POLR2A Missense_Mutation p.D1325H 0.11 possibly_damaging(0.863) TCGA-CV-6959-01 17 7579390 7579393 GGAA - TP53 Frame_Shift_Del p.S99Rfs*23 0.56 TCGA-CV-6959-01 18 31673461 31673461 T C NOL4 Missense_Mutation p.Q247R 0.13 tolerated(1) benign(0.075) TCGA-CV-6959-01 18 61649018 61649018 G C SERPINB8 Missense_Mutation p.D124H 0.37 deleterious(0.01) possibly_damaging(0.806) TCGA-CV-6959-01 18 8783718 8783718 G C SOGA2 Missense_Mutation p.R203P 0.41 deleterious(0) probably_damaging(1) TCGA-CV-6959-01 19 15905620 15905620 C A OR10H5 Silent p.G254G 0.15 TCGA-CV-6959-01 19 17056415 17056415 C T CPAMD8 Missense_Mutation p.A960T 0.17 tolerated(0.39) benign(0.006) TCGA-CV-6959-01 19 36017775 36017775 C T SBSN Missense_Mutation p.G470E 0.26 tolerated(0.13) probably_damaging(0.988) TCGA-CV-6959-01 19 38655170 38655170 G A SIPA1L3 Missense_Mutation p.A1278T 0.30 tolerated(0.16) benign(0.337) TCGA-CV-6959-01 19 49640003 49640003 C T PPFIA3 Missense_Mutation p.A563V 0.40 deleterious(0.03) benign(0.01) TCGA-CV-6959-01 19 6040054 6040054 G T RFX2 Silent p.I153I 0.12 TCGA-CV-6959-01 19 9061827 9061828 AT - MUC16 Frame_Shift_Del p.M8540Efs*2 0.15 TCGA-CV-6959-01 19 9583928 9583928 C A ZNF560 Missense_Mutation p.Q55H 0.16 deleterious(0.02) possibly_damaging(0.781) TCGA-CV-6959-01 1 10364155 10364155 C G KIF1B Intron 0.21 TCGA-CV-6959-01 1 145365392 145365392 C G NBPF10 Missense_Mutation p.C3339W 0.12 probably_damaging(0.924) TCGA-CV-6959-01 1 167409931 167409931 G C CD247 Silent p.V44V 0.13 TCGA-CV-6959-01 1 248513012 248513012 G A OR14C36 Silent p.V312V 0.18 TCGA-CV-6959-01 1 27216255 27216255 G A GPN2 Silent p.C111C 0.17 TCGA-CV-6959-01 1 35658680 35658680 A C SFPQ 5'UTR 0.17 TCGA-CV-6959-01 1 70687302 70687302 G A SRSF11 5'UTR 0.25 TCGA-CV-6959-01 20 31606143 31606143 C A BPIFB2 Missense_Mutation p.S219Y 0.13 deleterious(0.01) probably_damaging(0.935) TCGA-CV-6959-01 20 33876323 33876323 C T FAM83C Silent p.G249G 0.04 TCGA-CV-6959-01 22 32003955 32003955 G C SFI1 Silent p.V730V 0.11 TCGA-CV-6959-01 2 110015235 110015235 C T SH3RF3 Missense_Mutation p.R379C 0.11 deleterious(0.02) probably_damaging(0.918) TCGA-CV-6959-01 2 138208533 138208533 G T THSD7B Missense_Mutation p.W1026C 0.17 deleterious(0) unknown(0) TCGA-CV-6959-01 2 179599567 179599567 G A TTN Silent p.V5028V 0.11 TCGA-CV-6959-01 2 197184307 197184307 C A HECW2 Missense_Mutation p.C436F 0.38 tolerated_low_confidence(0.13) benign(0.005) TCGA-CV-6959-01 2 230911039 230911039 G T SLC16A14 Missense_Mutation p.P268H 0.16 tolerated(0.06) benign(0.004) TCGA-CV-6959-01 2 42991037 42991037 G C OXER1 Missense_Mutation p.L95V 0.13 deleterious(0) benign(0.219) TCGA-CV-6959-01 2 74883756 74883756 G A SEMA4F Missense_Mutation p.A81T 0.18 deleterious(0.02) benign(0.148) TCGA-CV-6959-01 2 99695246 99695246 C T TSGA10 Missense_Mutation p.R253Q 0.20 tolerated(1) benign(0.005) TCGA-CV-6959-01 3 129247885 129247885 C T RHO Silent p.F103F 0.12 TCGA-CV-6959-01 3 38739945 38739945 G A SCN10A Missense_Mutation p.A1589V 0.20 deleterious(0) probably_damaging(0.946) TCGA-CV-6959-01 3 447203 447203 G T CHL1 Nonsense_Mutation p.G1162* 0.17 TCGA-CV-6959-01 3 49755604 49755605 TG - AMIGO3 Frame_Shift_Del p.Q432Vfs*42 0.20 TCGA-CV-6959-01 3 78711146 78711146 C G ROBO1 Missense_Mutation p.W695C 0.27 deleterious(0) probably_damaging(0.997) TCGA-CV-6959-01 4 110667595 110667595 A G CFI Silent p.L404L 0.13 TCGA-CV-6959-01 4 185553070 185553070 C T CASP3 Missense_Mutation p.R111K 0.30 tolerated(0.29) probably_damaging(0.93) TCGA-CV-6959-01 4 187521088 187521088 G A FAT1 Nonsense_Mutation p.Q4023* 0.11 TCGA-CV-6959-01 5 140768679 140768679 C T PCDHGB4 Missense_Mutation p.R410C 0.20 deleterious(0) probably_damaging(1) TCGA-CV-6959-01 5 86659245 86659245 C T RASA1 Nonsense_Mutation p.R512* 0.38 TCGA-CV-6959-01 6 146755794 146755794 G A GRM1 Silent p.S1149S 0.21 TCGA-CV-6959-01 6 27839920 27839920 C T HIST1H3I Silent p.S58S 0.13 TCGA-CV-6959-01 6 31847881 31847881 G A EHMT2 Silent p.L1205L 0.26 TCGA-CV-6959-01 6 72968754 72968754 G A RIMS1 Missense_Mutation p.R998Q 0.12 tolerated(0.14) possibly_damaging(0.566) TCGA-CV-6959-01 6 83872585 83872585 G A DOPEY1 Missense_Mutation p.E2347K 0.30 deleterious(0) probably_damaging(0.965) TCGA-CV-6959-01 7 110763263 110763263 C A LRRN3 Silent p.L145L 0.09 TCGA-CV-6959-01 7 43484716 43484716 G A HECW1 Missense_Mutation p.D649N 0.35 deleterious_low_confidence(0.02) benign(0.002) TCGA-CV-6959-01 7 8790658 8790658 G A NXPH1 Silent p.T25T 0.31 TCGA-CV-6959-01 8 22900702 22900702 C T TNFRSF10B Missense_Mutation p.A67T 0.11 tolerated(0.73) benign(0.036) TCGA-CV-6959-01 8 56015652 56015652 G T XKR4 Missense_Mutation p.A202S 0.27 tolerated(0.28) benign(0.185) TCGA-CV-6959-01 9 111617576 111617576 C G ACTL7B Missense_Mutation p.G212A 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-6959-01 9 123476176 123476176 G T MEGF9 Missense_Mutation p.P154Q 0.14 tolerated(0.25) benign(0.003) TCGA-CV-6959-01 9 139405210 139405210 G A NOTCH1 Missense_Mutation p.R879W 0.21 deleterious(0.03) benign(0.052) TCGA-CV-6959-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.50 TCGA-CV-6959-01 9 79938130 79938130 G T VPS13A Missense_Mutation p.R1993L 0.32 deleterious(0) probably_damaging(0.971) TCGA-CV-6959-01 X 146312270 146312270 C A MIR506 RNA 0.62 TCGA-CV-6959-01 X 152808591 152808591 C G ATP2B3 Missense_Mutation p.A294G 0.33 tolerated(0.12) possibly_damaging(0.861) TCGA-CV-6959-01 X 34149633 34149633 G A FAM47A Missense_Mutation p.R255C 0.30 tolerated(0.14) probably_damaging(0.963) TCGA-CV-6959-01 X 68725656 68725656 C A FAM155B Silent p.A177A 0.31 TCGA-CV-6959-01 X 99662705 99662705 C A PCDH19 Silent p.L297L 0.49 TCGA-CV-6960-01 10 118357567 118357567 A G PNLIPRP1 Missense_Mutation p.T235A 0.57 deleterious(0.02) benign(0.02) TCGA-CV-6960-01 10 11911812 11911812 G T PROSER2 Missense_Mutation p.G239C 0.35 tolerated(0.18) benign(0.002) TCGA-CV-6960-01 10 14894529 14894529 A T HSPA14 Nonsense_Mutation p.R245* 0.33 TCGA-CV-6960-01 10 18331685 18331685 C A SLC39A12 Missense_Mutation p.L667M 0.20 deleterious(0) probably_damaging(0.992) TCGA-CV-6960-01 10 29600092 29600092 C G LYZL1 3'UTR 0.26 TCGA-CV-6960-01 10 43691705 43691705 A T RASGEF1A Missense_Mutation p.L478Q 0.27 deleterious(0.01) benign(0.126) TCGA-CV-6960-01 10 62648784 62648784 C T RHOBTB1 Silent p.L214L 0.21 TCGA-CV-6960-01 10 81319105 81319105 G T SFTPA2 Missense_Mutation p.D45E 0.16 tolerated(0.14) probably_damaging(1) TCGA-CV-6960-01 11 113076802 113076802 C A NCAM1 Silent p.I235I 0.13 TCGA-CV-6960-01 11 113639651 113639651 T A ZW10 Missense_Mutation p.E48D 0.47 tolerated(0.6) benign(0.028) TCGA-CV-6960-01 11 118949031 118949033 AGA - VPS11 In_Frame_Del p.K637del 0.14 TCGA-CV-6960-01 11 128332213 128332213 C A ETS1 3'UTR 0.19 TCGA-CV-6960-01 11 132016264 132016264 C T NTM Missense_Mutation p.P86S 0.22 tolerated(0.08) possibly_damaging(0.897) TCGA-CV-6960-01 11 26725200 26725200 G A SLC5A12 Silent p.L233L 0.37 TCGA-CV-6960-01 11 40136945 40136945 G C LRRC4C Missense_Mutation p.H300D 0.34 deleterious(0) possibly_damaging(0.871) TCGA-CV-6960-01 11 45241231 45241231 G A PRDM11 Missense_Mutation p.R222Q 0.26 tolerated(0.17) probably_damaging(0.971) TCGA-CV-6960-01 11 47598968 47598971 ATGA - KBTBD4 Frame_Shift_Del p.I210Tfs*15 0.25 TCGA-CV-6960-01 11 55136211 55136211 C A OR4A15 Missense_Mutation p.F284L 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.76) TCGA-CV-6960-01 11 5758676 5758676 C T OR56B1 Silent p.A310A 0.28 TCGA-CV-6960-01 11 6048915 6048915 G T OR56A1 Nonsense_Mutation p.S7* 0.28 TCGA-CV-6960-01 11 65048604 65048604 C G POLA2 Missense_Mutation p.L296V 0.21 deleterious(0) probably_damaging(0.947) TCGA-CV-6960-01 11 67051732 67051732 G A ADRBK1 Silent p.S514S 0.38 TCGA-CV-6960-01 12 10223926 10223926 G A CLEC1A 3'UTR 0.30 TCGA-CV-6960-01 12 114261056 114261056 G A RBM19 Silent p.D952D 0.32 TCGA-CV-6960-01 12 120884176 120884176 G - TRIAP1 5'UTR 0.23 TCGA-CV-6960-01 12 123200755 123200755 C T HCAR3 Missense_Mutation p.C177Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-CV-6960-01 12 124132650 124132650 A - GTF2H3 Frame_Shift_Del p.E114Gfs*5 0.25 TCGA-CV-6960-01 12 46215209 46215209 G T ARID2 Missense_Mutation p.G215V 0.18 deleterious(0.02) probably_damaging(0.951) TCGA-CV-6960-01 12 4721873 4721873 C G DYRK4 Missense_Mutation p.S437W 0.47 deleterious(0.02) possibly_damaging(0.648) TCGA-CV-6960-01 12 51632592 51632592 G A DAZAP2 5'Flank 0.47 TCGA-CV-6960-01 12 57323300 57323300 T C SDR9C7 Missense_Mutation p.I200V 0.47 tolerated(0.23) benign(0.175) TCGA-CV-6960-01 12 57550688 57550688 G A LRP1 Missense_Mutation p.G516R 0.20 probably_damaging(0.982) TCGA-CV-6960-01 12 6559460 6559466 TCGGTCG - CD27 Frame_Shift_Del p.R131Lfs*4 0.32 TCGA-CV-6960-01 12 6976735 6976735 C T TPI1 Missense_Mutation p.A39V 0.30 tolerated(0.18) benign(0.026) TCGA-CV-6960-01 12 7864234 7864234 C - DPPA3 Frame_Shift_Del p.R24Gfs*14 0.34 TCGA-CV-6960-01 13 107822853 107822853 C A FAM155A Nonsense_Mutation p.E457* 0.62 TCGA-CV-6960-01 13 36700222 36700222 G A DCLK1 Missense_Mutation p.A18V 0.38 tolerated_low_confidence(0.58) unknown(0) TCGA-CV-6960-01 13 46288501 46288501 G T SPERT Missense_Mutation p.R447S 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-6960-01 13 88328994 88328994 C A SLITRK5 Missense_Mutation p.R451S 0.62 tolerated(0.08) benign(0.199) TCGA-CV-6960-01 13 92345880 92345880 G C GPC5 Missense_Mutation p.M255I 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6960-01 13 93518663 93518663 G C GPC5 Missense_Mutation p.V564L 0.63 tolerated_low_confidence(0.72) benign(0.001) TCGA-CV-6960-01 14 101454501 101454501 T A SNORD114-27 RNA 0.31 TCGA-CV-6960-01 14 34243588 34243588 C A NPAS3 Missense_Mutation p.H300N 0.22 tolerated(0.09) possibly_damaging(0.775) TCGA-CV-6960-01 14 44974135 44974135 G A FSCB Missense_Mutation p.P686S 0.45 tolerated(0.62) unknown(0) TCGA-CV-6960-01 14 51464789 51464789 G A TRIM9 Silent p.L528L 0.24 TCGA-CV-6960-01 14 62204929 62204929 G A HIF1A Silent p.T482T 0.37 TCGA-CV-6960-01 14 69345204 69345204 C T ACTN1 Missense_Mutation p.A800T 0.41 tolerated_low_confidence(0.09) benign(0.021) TCGA-CV-6960-01 14 72175990 72175990 G A SIPA1L1 Missense_Mutation p.A1294T 0.24 tolerated(0.24) benign(0.24) TCGA-CV-6960-01 14 89088975 89088975 A G EML5 Silent p.D1662D 0.27 TCGA-CV-6960-01 14 93151468 93151468 G A RIN3 Silent p.K868K 0.23 TCGA-CV-6960-01 14 94845935 94845935 G T SERPINA1 Missense_Mutation p.H311N 0.27 deleterious(0.01) possibly_damaging(0.812) TCGA-CV-6960-01 14 95054055 95054055 A T SERPINA5 Missense_Mutation p.N119I 0.33 tolerated(0.09) benign(0.006) TCGA-CV-6960-01 15 24921008 24921008 G T NPAP1 5'UTR 0.30 TCGA-CV-6960-01 15 29346999 29346999 C T APBA2 Silent p.T304T 0.17 TCGA-CV-6960-01 15 62167104 62167104 C A VPS13C Missense_Mutation p.G3462V 0.45 deleterious(0) probably_damaging(1) TCGA-CV-6960-01 16 18841683 18841691 TGTAGTAGT - SMG1 In_Frame_Del p.R2931_H2934delinsS 0.18 TCGA-CV-6960-01 16 20043388 20043388 C G GPR139 Missense_Mutation p.R244P 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-6960-01 16 20873495 20873495 G T DCUN1D3 Silent p.P122P 0.25 TCGA-CV-6960-01 16 20873496 20873496 G T DCUN1D3 Missense_Mutation p.P122H 0.24 deleterious(0) probably_damaging(0.988) TCGA-CV-6960-01 16 31734616 31734620 GGAGC - ZNF720 Frame_Shift_Del p.E57Kfs*23 0.24 TCGA-CV-6960-01 16 33020772 33020772 A C IGHV3OR16-8 Silent p.P60P 0.26 TCGA-CV-6960-01 16 48595684 48595684 A G N4BP1 Silent p.S290S 0.28 TCGA-CV-6960-01 16 57144698 57144698 C - CPNE2 Frame_Shift_Del p.M17Wfs*14 0.22 TCGA-CV-6960-01 16 67984561 67984561 C T SLC12A4 Missense_Mutation p.D486N 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-CV-6960-01 16 84492912 84492912 C T ATP2C2 Silent p.T751T 0.26 TCGA-CV-6960-01 17 10402040 10402040 G T MYH1 Missense_Mutation p.Q1362K 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6960-01 17 18067125 18067125 T A MYO15A Missense_Mutation p.Y3254N 0.29 unknown(0) TCGA-CV-6960-01 17 21730864 21730864 C A UBBP4 Missense_Mutation p.L56I 0.37 deleterious(0.05) benign(0.286) TCGA-CV-6960-01 17 30801833 30801833 A G PSMD11 Silent p.A280A 0.06 TCGA-CV-6960-01 17 34236020 34236034 GCTGTAGTCATCGGG - AC015849.16 RNA 0.16 TCGA-CV-6960-01 17 43922823 43922823 A T SPPL2C Missense_Mutation p.D184V 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-6960-01 17 60028197 60028197 G T MED13 Missense_Mutation p.L2094I 0.05 tolerated(0.06) benign(0.092) TCGA-CV-6960-01 17 60342256 60342256 A T TBC1D3P2 3'Flank 0.31 TCGA-CV-6960-01 17 60342257 60342257 G T TBC1D3P2 3'Flank 0.31 TCGA-CV-6960-01 17 7577142 7577142 C A TP53 Nonsense_Mutation p.G266* 0.38 TCGA-CV-6960-01 17 7577143 7577143 C A TP53 Silent p.L265L 0.38 TCGA-CV-6960-01 17 8215500 8215500 G A ARHGEF15 Missense_Mutation p.R48Q 0.32 tolerated_low_confidence(0.18) benign(0) TCGA-CV-6960-01 18 23873435 23873435 C T TAF4B Missense_Mutation p.S591L 0.43 deleterious(0) possibly_damaging(0.884) TCGA-CV-6960-01 18 23873440 23873440 C T TAF4B Nonsense_Mutation p.Q593* 0.40 TCGA-CV-6960-01 18 64172320 64172320 C G CDH19 Missense_Mutation p.R683T 0.45 deleterious(0) possibly_damaging(0.899) TCGA-CV-6960-01 19 11510580 11510580 G T RGL3 Missense_Mutation p.P572H 0.35 deleterious(0.05) unknown(0) TCGA-CV-6960-01 19 12444382 12444382 G T ZNF563 5'UTR 0.33 TCGA-CV-6960-01 19 17056421 17056428 TCTCCTCA - CPAMD8 Frame_Shift_Del p.E956Sfs*20 0.30 TCGA-CV-6960-01 19 18729276 18729276 G C TMEM59L Missense_Mutation p.A292P 0.18 deleterious(0) possibly_damaging(0.866) TCGA-CV-6960-01 19 36362583 36362583 C T APLP1 Missense_Mutation p.R203C 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6960-01 19 44419353 44419355 CTA - ZNF45 Splice_Site p.X79_splice 0.56 TCGA-CV-6960-01 19 52000164 52000164 G T SIGLEC12 Missense_Mutation p.D523E 0.44 tolerated(0.12) possibly_damaging(0.677) TCGA-CV-6960-01 19 54135364 54135364 C A DPRX Missense_Mutation p.P2T 0.42 tolerated(0.26) benign(0.026) TCGA-CV-6960-01 19 8486776 8486776 G A MARCH2 Missense_Mutation p.G18S 0.25 tolerated_low_confidence(0.39) benign(0.004) TCGA-CV-6960-01 19 9213869 9213869 C T OR7G2 Silent p.L38L 0.32 TCGA-CV-6960-01 1 103354187 103354187 C A COL11A1 Splice_Site p.X1519_splice 0.26 TCGA-CV-6960-01 1 103471395 103471395 C A COL11A1 Missense_Mutation p.R615M 0.28 unknown(0) TCGA-CV-6960-01 1 11562935 11562935 C T PTCHD2 Silent p.L433L 0.05 TCGA-CV-6960-01 1 156261302 156261302 G - TMEM79 Frame_Shift_Del p.E366Dfs*41 0.21 TCGA-CV-6960-01 1 16332707 16332707 C T C1orf64 Missense_Mutation p.P126S 0.36 tolerated(0.63) benign(0.082) TCGA-CV-6960-01 1 16748518 16748518 G C SPATA21 Intron 0.31 TCGA-CV-6960-01 1 196295982 196295982 T C KCNT2 Missense_Mutation p.Y714C 0.28 deleterious(0) probably_damaging(0.998) TCGA-CV-6960-01 1 218614596 218614596 C A TGFB2 Nonsense_Mutation p.C407* 0.32 TCGA-CV-6960-01 1 237838057 237838057 C A RYR2 Missense_Mutation p.T2914K 0.22 benign(0.082) TCGA-CV-6960-01 1 36028893 36028893 G C NCDN Missense_Mutation p.K492N 0.27 tolerated(0.18) benign(0.016) TCGA-CV-6960-01 1 39879476 39879476 C G KIAA0754 Missense_Mutation p.A1044G 0.29 unknown(0) TCGA-CV-6960-01 1 57341807 57341807 G A C8A Missense_Mutation p.C130Y 0.28 deleterious(0) probably_damaging(1) TCGA-CV-6960-01 1 6172998 6172998 C A CHD5 Missense_Mutation p.S1658I 0.31 tolerated_low_confidence(0.12) benign(0.001) TCGA-CV-6960-01 1 76779616 76779616 C A ST6GALNAC3 Missense_Mutation p.P49T 0.34 benign(0.086) TCGA-CV-6960-01 1 85647842 85647842 C T SYDE2 Missense_Mutation p.G828E 0.16 deleterious(0.01) probably_damaging(1) TCGA-CV-6960-01 20 34828211 34828211 A T AAR2 Missense_Mutation p.S141C 0.48 deleterious(0) possibly_damaging(0.705) TCGA-CV-6960-01 20 3679898 3679898 G C SIGLEC1 Missense_Mutation p.D579E 0.32 tolerated(0.18) benign(0.06) TCGA-CV-6960-01 20 3845384 3845384 C T MAVS Silent p.L369L 0.30 TCGA-CV-6960-01 20 44236685 44236685 G C WFDC9 3'UTR 0.25 TCGA-CV-6960-01 20 44236686 44236686 G A WFDC9 3'UTR 0.24 TCGA-CV-6960-01 20 49196356 49196356 C G PTPN1 Missense_Mutation p.F327L 0.21 tolerated_low_confidence(0.24) benign(0.003) TCGA-CV-6960-01 21 10862797 10862797 G T IGHV1OR21-1 Missense_Mutation p.K31N 0.27 deleterious(0.05) benign(0.359) TCGA-CV-6960-01 21 15561702 15561702 C A LIPI Missense_Mutation p.V50L 0.38 tolerated(0.77) benign(0.015) TCGA-CV-6960-01 21 22696776 22696776 C T NCAM2 Silent p.S231S 0.23 TCGA-CV-6960-01 21 32253791 32253791 C A KRTAP11-1 Missense_Mutation p.R18L 0.36 tolerated(0.59) benign(0.012) TCGA-CV-6960-01 22 19504093 19504093 C - CDC45 Frame_Shift_Del p.L529* 0.23 TCGA-CV-6960-01 22 21354710 21354710 C T THAP7 Missense_Mutation p.G130D 0.27 tolerated(0.66) benign(0.001) TCGA-CV-6960-01 22 22782348 22782348 A T IGLV5-37 Missense_Mutation p.M116L 0.31 tolerated(0.19) benign(0) TCGA-CV-6960-01 22 23162156 23162156 C A IGLV3-9 Silent p.S83S 0.22 TCGA-CV-6960-01 22 24515613 24515613 A G CABIN1 Missense_Mutation p.Y1527C 0.35 deleterious(0) probably_damaging(0.998) TCGA-CV-6960-01 22 26838460 26838460 G C ASPHD2 Missense_Mutation p.G308R 0.25 deleterious(0) probably_damaging(0.97) TCGA-CV-6960-01 22 33733754 33733754 C A LARGE Missense_Mutation p.V389L 0.30 tolerated(0.06) benign(0.168) TCGA-CV-6960-01 22 36689419 36689419 C G MYH9 Missense_Mutation p.A1351P 0.35 possibly_damaging(0.781) TCGA-CV-6960-01 22 42538867 42538867 G A NDUFA6-AS1 3'Flank 0.38 TCGA-CV-6960-01 2 102475479 102475479 G C MAP4K4 Missense_Mutation p.E473Q 0.14 tolerated_low_confidence(0.25) unknown(0) TCGA-CV-6960-01 2 113535595 113535595 G A IL1A Missense_Mutation p.A195V 0.19 deleterious(0.01) benign(0.011) TCGA-CV-6960-01 2 136107559 136107559 C A ZRANB3 Nonsense_Mutation p.E196* 0.23 TCGA-CV-6960-01 2 149247953 149247953 C A MBD5 Missense_Mutation p.S1351R 0.31 deleterious_low_confidence(0) unknown(0) TCGA-CV-6960-01 2 162751316 162751316 C G SLC4A10 Missense_Mutation p.P441R 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-6960-01 2 169764237 169764237 C A G6PC2 Missense_Mutation p.A239D 0.33 deleterious(0) probably_damaging(0.92) TCGA-CV-6960-01 2 170129512 170129512 C A LRP2 Missense_Mutation p.D681Y 0.30 probably_damaging(0.948) TCGA-CV-6960-01 2 171259494 171259494 G A MYO3B Missense_Mutation p.A756T 0.14 tolerated(0.17) benign(0.196) TCGA-CV-6960-01 2 180409678 180409678 G A ZNF385B Missense_Mutation p.T91I 0.29 tolerated(0.06) benign(0.202) TCGA-CV-6960-01 2 182395331 182395331 G C ITGA4 Missense_Mutation p.L873F 0.32 tolerated(0.65) benign(0.052) TCGA-CV-6960-01 2 189849935 189849935 C A COL3A1 Missense_Mutation p.P99T 0.37 unknown(0) TCGA-CV-6960-01 2 197640813 197640813 C G GTF3C3 Missense_Mutation p.R539P 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-CV-6960-01 2 204255845 204255845 T A ABI2 Missense_Mutation p.M180K 0.19 tolerated(0.1) benign(0.147) TCGA-CV-6960-01 2 212530075 212530075 T A ERBB4 Missense_Mutation p.H615L 0.23 tolerated(0.07) benign(0.015) TCGA-CV-6960-01 2 214794821 214794821 T C SPAG16 Missense_Mutation p.V451A 0.39 deleterious(0) probably_damaging(0.935) TCGA-CV-6960-01 2 225368493 225368493 A C CUL3 Missense_Mutation p.L418R 0.25 deleterious(0) probably_damaging(0.995) TCGA-CV-6960-01 2 225717743 225717743 G T DOCK10 Missense_Mutation p.T662K 0.37 tolerated(0.16) benign(0.065) TCGA-CV-6960-01 2 234678255 234678255 C T UGT1A10 Intron 0.10 TCGA-CV-6960-01 2 238249123 238249123 G A COL6A3 Silent p.F2812F 0.36 TCGA-CV-6960-01 2 238283189 238283189 G T COL6A3 Missense_Mutation p.P1182Q 0.35 probably_damaging(0.999) TCGA-CV-6960-01 2 37035846 37035846 G C VIT Missense_Mutation p.E541Q 0.33 deleterious(0) probably_damaging(0.959) TCGA-CV-6960-01 2 37232867 37232867 C A HEATR5B Nonsense_Mutation p.E1605* 0.33 TCGA-CV-6960-01 2 43451842 43451842 C A ZFP36L2 Silent p.P367P 0.36 TCGA-CV-6960-01 2 88874652 88874652 G A EIF2AK3 Silent p.H783H 0.35 TCGA-CV-6960-01 2 99012576 99012576 C A CNGA3 Missense_Mutation p.H315N 0.51 deleterious(0) probably_damaging(1) TCGA-CV-6960-01 3 111604315 111604315 G T PHLDB2 Intron 0.30 TCGA-CV-6960-01 3 164758778 164758778 A G SI Silent p.F703F 0.26 TCGA-CV-6960-01 3 164781266 164781266 A G SI Missense_Mutation p.S291P 0.17 deleterious(0) probably_damaging(0.985) TCGA-CV-6960-01 3 178951964 178951964 G C PIK3CA Missense_Mutation p.G1007R 0.30 tolerated(0.1) possibly_damaging(0.817) TCGA-CV-6960-01 3 180349272 180349272 G T CCDC39 Silent p.A661A 0.19 TCGA-CV-6960-01 3 30875411 30875411 G T GADL1 Silent p.A328A 0.44 TCGA-CV-6960-01 3 46399710 46399710 G T CCR2 Missense_Mutation p.R231L 0.41 deleterious(0) benign(0.289) TCGA-CV-6960-01 3 49738099 49738099 C T RNF123 Silent p.L412L 0.37 TCGA-CV-6960-01 3 58520802 58520802 C T ACOX2 Missense_Mutation p.G11E 0.36 deleterious_low_confidence(0.03) benign(0.02) TCGA-CV-6960-01 3 68782251 68782251 C T FAM19A4 3'UTR 0.32 TCGA-CV-6960-01 3 74350820 74350820 C A CNTN3 Silent p.V641V 0.56 TCGA-CV-6960-01 4 100830007 100830007 T C DNAJB14 Silent p.K166K 0.34 TCGA-CV-6960-01 4 114290872 114290872 C G ANK2 Missense_Mutation p.P3841A 0.38 benign(0.364) TCGA-CV-6960-01 4 122800901 122800901 C G TRPC3 Missense_Mutation p.R919T 0.29 deleterious_low_confidence(0.01) benign(0.002) TCGA-CV-6960-01 4 126408505 126408505 G T FAT4 Missense_Mutation p.K4274N 0.29 possibly_damaging(0.727) TCGA-CV-6960-01 4 134073619 134073619 C A PCDH10 Missense_Mutation p.A775D 0.32 tolerated(0.39) possibly_damaging(0.698) TCGA-CV-6960-01 4 13602128 13602128 G T BOD1L1 Silent p.A2132A 0.26 TCGA-CV-6960-01 4 42588439 42588439 C A ATP8A1 Missense_Mutation p.G217C 0.28 deleterious(0.01) probably_damaging(1) TCGA-CV-6960-01 4 62812713 62812713 C G LPHN3 Missense_Mutation p.T766R 0.30 tolerated(0.34) benign(0.015) TCGA-CV-6960-01 4 71275449 71275449 T G PROL1 Missense_Mutation p.L135R 0.37 tolerated_low_confidence(0.2) possibly_damaging(0.883) TCGA-CV-6960-01 4 73175117 73175117 G A ADAMTS3 Missense_Mutation p.L726F 0.33 tolerated(0.6) benign(0.021) TCGA-CV-6960-01 4 77231280 77231280 G C FAM47E-STBD1 3'UTR 0.17 TCGA-CV-6960-01 4 81188293 81188293 G T FGF5 Silent p.P105P 0.32 TCGA-CV-6960-01 5 10992676 10992676 G T CTNND2 Silent p.P1066P 0.19 TCGA-CV-6960-01 5 11397162 11397162 G A CTNND2 Missense_Mutation p.T198M 0.29 deleterious(0.04) benign(0.223) TCGA-CV-6960-01 5 153056596 153056596 G T GRIA1 Nonsense_Mutation p.E312* 0.42 TCGA-CV-6960-01 5 153056599 153056599 G C GRIA1 Missense_Mutation p.A313P 0.41 tolerated(0.11) probably_damaging(1) TCGA-CV-6960-01 5 167921571 167921571 C T RARS Silent p.H165H 0.21 TCGA-CV-6960-01 5 176687055 176687055 G T NSD1 Missense_Mutation p.G1678W 0.31 deleterious(0) probably_damaging(1) TCGA-CV-6960-01 5 32783095 32783095 C G NPR3 Missense_Mutation p.R463G 0.24 tolerated(0.29) benign(0.19) TCGA-CV-6960-01 5 33614378 33614378 C - ADAMTS12 Frame_Shift_Del p.G831Afs*8 0.24 TCGA-CV-6960-01 5 34823148 34823148 C T RAI14 Missense_Mutation p.P404S 0.31 tolerated(0.75) benign(0.005) TCGA-CV-6960-01 6 10529410 10529410 C T GCNT2 Missense_Mutation p.S89F 0.41 deleterious(0) probably_damaging(0.996) TCGA-CV-6960-01 6 109215694 109215694 G T ARMC2 Missense_Mutation p.R232S 0.26 tolerated(0.19) benign(0.021) TCGA-CV-6960-01 6 112671295 112671295 G T RFPL4B Missense_Mutation p.D129Y 0.35 deleterious(0.04) benign(0.023) TCGA-CV-6960-01 6 112671407 112671407 C A RFPL4B Missense_Mutation p.P166Q 0.30 deleterious(0) benign(0.22) TCGA-CV-6960-01 6 129723502 129723502 A G LAMA2 Missense_Mutation p.M1866V 0.38 deleterious(0.02) benign(0.017) TCGA-CV-6960-01 6 130378576 130378576 G T L3MBTL3 Silent p.A231A 0.29 TCGA-CV-6960-01 6 26235207 26235207 G A HIST1H1D 5'UTR 0.31 TCGA-CV-6960-01 6 42936617 42936617 G A PEX6 Silent p.L492L 0.67 TCGA-CV-6960-01 6 75825753 75825753 C T COL12A1 Missense_Mutation p.D2514N 0.12 benign(0.223) TCGA-CV-6960-01 7 100685833 100685833 C T MUC17 Silent p.S3712S 0.70 TCGA-CV-6960-01 7 103216153 103216153 C A RELN Splice_Site p.X1382_splice 0.09 TCGA-CV-6960-01 7 107580499 107580499 G C LAMB1 Missense_Mutation p.D1232E 0.48 tolerated(1) benign(0.001) TCGA-CV-6960-01 7 1131629 1131629 G A GPER1 Missense_Mutation p.E89K 0.21 tolerated(0.73) possibly_damaging(0.756) TCGA-CV-6960-01 7 122028668 122028668 C T CADPS2 Missense_Mutation p.A1045T 0.43 tolerated(0.11) possibly_damaging(0.899) TCGA-CV-6960-01 7 142750110 142750110 C A OR6V1 Silent p.R225R 0.46 TCGA-CV-6960-01 7 25266438 25266438 T C NPVF Missense_Mutation p.M116V 0.28 tolerated(0.25) benign(0.032) TCGA-CV-6960-01 7 32209516 32209516 C A PDE1C Silent p.G63G 0.19 TCGA-CV-6960-01 7 38433765 38433765 G A AMPH Missense_Mutation p.A483V 0.44 tolerated(0.16) benign(0.006) TCGA-CV-6960-01 7 45928583 45928583 C A IGFBP1 Missense_Mutation p.S111Y 0.50 deleterious(0.03) benign(0.423) TCGA-CV-6960-01 7 72717256 72717256 G C NSUN5 3'UTR 0.34 TCGA-CV-6960-01 7 74015431 74015431 C G GTF2IRD1 Missense_Mutation p.S929C 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.889) TCGA-CV-6960-01 7 94946068 94946068 T G PON1 Missense_Mutation p.N60T 0.12 deleterious(0.03) benign(0.101) TCGA-CV-6960-01 7 97872809 97872809 C A TECPR1 Silent p.L209L 0.64 TCGA-CV-6960-01 8 105026790 105026790 G T RIMS2 Missense_Mutation p.G1094V 0.39 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-CV-6960-01 8 139890335 139890335 G A COL22A1 Missense_Mutation p.R106W 0.76 unknown(0) TCGA-CV-6960-01 8 48649939 48649939 C A CEBPD Silent p.R248R 0.27 TCGA-CV-6960-01 8 68184172 68184172 C A ARFGEF1 Splice_Site p.X446_splice 0.48 TCGA-CV-6960-01 8 95863869 95863869 A G INTS8 Silent p.L532L 0.28 TCGA-CV-6960-01 9 100963875 100963875 G T TBC1D2 Missense_Mutation p.H781Q 0.24 tolerated(0.06) benign(0.073) TCGA-CV-6960-01 9 104499694 104499694 C T GRIN3A Missense_Mutation p.V190M 0.25 tolerated(0.05) probably_damaging(0.979) TCGA-CV-6960-01 9 107267065 107267066 - A OR13F1 Frame_Shift_Ins p.N175Kfs*6 0.18 TCGA-CV-6960-01 9 108366711 108366711 T A FKTN Silent p.I195I 0.30 TCGA-CV-6960-01 9 113169643 113169643 C A SVEP1 Missense_Mutation p.G2746V 0.29 probably_damaging(1) TCGA-CV-6960-01 9 137772670 137772670 G T FCN2 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0.03) benign(0.001) TCGA-CV-6960-01 9 140438232 140438232 A C PNPLA7 Silent p.T103T 0.23 TCGA-CV-6960-01 9 34622436 34622436 G - ARID3C Frame_Shift_Del p.P319Qfs*7 0.24 TCGA-CV-6960-01 9 77403655 77403655 C T TRPM6 Missense_Mutation p.A848T 0.16 deleterious(0.04) benign(0.021) TCGA-CV-6960-01 9 95795123 95795123 C A FGD3 Missense_Mutation p.L585M 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-CV-6960-01 9 990980 990980 C G DMRT3 Missense_Mutation p.S465C 0.45 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-CV-6960-01 X 110653366 110653366 C G DCX Silent p.L168L 0.66 TCGA-CV-6960-01 X 119410744 119410744 T C TMEM255A Missense_Mutation p.D248G 0.68 deleterious(0) probably_damaging(0.999) TCGA-CV-6960-01 X 123515059 123515059 T C TENM1 Missense_Mutation p.N2509S 0.63 tolerated(1) benign(0) TCGA-CV-6960-01 X 138899028 138899028 G A ATP11C Silent p.I107I 0.41 TCGA-CV-6960-01 X 144329127 144329127 C T SPANXN1 Silent p.S7S 0.53 TCGA-CV-6960-01 X 73048907 73048907 T G XIST RNA 0.74 TCGA-CV-6960-01 X 79999656 79999656 C A BRWD3 Missense_Mutation p.V230F 0.59 deleterious(0) benign(0.33) TCGA-CV-6960-01 X 82764275 82764275 C T POU3F4 Missense_Mutation p.L315F 0.52 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 10 115368262 115368262 G A NRAP Missense_Mutation p.R1205W 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 10 134012379 134012379 G A DPYSL4 Missense_Mutation p.A239T 0.09 deleterious(0) probably_damaging(0.995) TCGA-CV-6961-01 10 29821937 29821937 C A SVIL Missense_Mutation p.K453N 0.42 deleterious(0.02) benign(0.039) TCGA-CV-6961-01 10 70231756 70231756 G A DNA2 Missense_Mutation p.H42Y 0.46 tolerated_low_confidence(0.13) benign(0.021) TCGA-CV-6961-01 10 72492036 72492036 C T ADAMTS14 Missense_Mutation p.H380Y 0.11 deleterious(0) probably_damaging(0.961) TCGA-CV-6961-01 11 10828424 10828424 G C EIF4G2 Missense_Mutation p.S17W 0.22 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-CV-6961-01 11 110023720 110023720 G C ZC3H12C Missense_Mutation p.D284H 0.30 deleterious(0) probably_damaging(0.975) TCGA-CV-6961-01 11 117860224 117860224 G A IL10RA Missense_Mutation p.V86M 0.43 tolerated(0.23) benign(0.05) TCGA-CV-6961-01 11 118453900 118453900 G A ARCN1 Missense_Mutation p.E92K 0.41 deleterious(0) probably_damaging(0.955) TCGA-CV-6961-01 11 123886938 123886938 C A OR10G4 Silent p.S219S 0.36 TCGA-CV-6961-01 11 129724648 129724648 C G TMEM45B Missense_Mutation p.L108V 0.41 tolerated(0.54) benign(0.015) TCGA-CV-6961-01 11 14280917 14280917 G A RP11-21L19.1 3'Flank 0.19 TCGA-CV-6961-01 11 14486569 14486569 C T COPB1 Silent p.L766L 0.36 TCGA-CV-6961-01 11 14507935 14507935 G C COPB1 Missense_Mutation p.S272C 0.11 deleterious(0) probably_damaging(0.995) TCGA-CV-6961-01 11 18105261 18105261 C T SAAL1 Missense_Mutation p.D354N 0.11 tolerated(0.25) benign(0.286) TCGA-CV-6961-01 11 18159813 18159813 G C MRGPRX3 3'UTR 0.24 TCGA-CV-6961-01 11 18231217 18231217 G T RP11-113D6.10 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) benign(0.02) TCGA-CV-6961-01 11 27384432 27384432 C G CCDC34 Missense_Mutation p.E104Q 0.24 tolerated(0.09) benign(0.094) TCGA-CV-6961-01 11 33566371 33566371 G A KIAA1549L Silent p.L647L 0.32 TCGA-CV-6961-01 11 34107680 34107680 C G CAPRIN1 Missense_Mutation p.P346A 0.10 tolerated(0.21) benign(0.006) TCGA-CV-6961-01 11 43911373 43911373 G C ALKBH3 Missense_Mutation p.R122T 0.26 deleterious(0.01) possibly_damaging(0.636) TCGA-CV-6961-01 11 45241256 45241256 G A PRDM11 Missense_Mutation p.M230I 0.28 tolerated(0.35) benign(0.097) TCGA-CV-6961-01 11 57069957 57069957 G A TNKS1BP1 Silent p.P1553P 0.20 TCGA-CV-6961-01 11 58919875 58919875 A G FAM111A Missense_Mutation p.N245S 0.16 deleterious(0.03) possibly_damaging(0.637) TCGA-CV-6961-01 11 58972245 58972245 G A DTX4 Missense_Mutation p.E575K 0.17 deleterious(0) possibly_damaging(0.881) TCGA-CV-6961-01 11 59283051 59283051 G C OR4D9 Missense_Mutation p.L222F 0.15 deleterious(0.01) benign(0.309) TCGA-CV-6961-01 11 61548770 61548770 C T MYRF Silent p.S911S 0.26 TCGA-CV-6961-01 11 63283183 63283183 G A LGALS12 Missense_Mutation p.E289K 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 11 63581231 63581231 G A C11orf84 Missense_Mutation p.E25K 0.24 tolerated_low_confidence(0.11) benign(0.07) TCGA-CV-6961-01 11 63990903 63990903 G A FERMT3 Missense_Mutation p.R648H 0.15 tolerated(0.1) benign(0.001) TCGA-CV-6961-01 11 64082296 64082296 G A ESRRA Missense_Mutation p.D219N 0.25 deleterious(0.03) benign(0.022) TCGA-CV-6961-01 11 64323368 64323368 G C SLC22A11 5'UTR 0.43 TCGA-CV-6961-01 11 64893435 64893435 G C MRPL49 3'UTR 0.19 TCGA-CV-6961-01 11 65271805 65271805 G C MALAT1 RNA 0.19 TCGA-CV-6961-01 11 65272108 65272108 G A MALAT1 RNA 0.23 TCGA-CV-6961-01 11 65272327 65272327 G A MALAT1 RNA 0.29 TCGA-CV-6961-01 11 65272344 65272344 G A MALAT1 RNA 0.23 TCGA-CV-6961-01 11 65272416 65272416 C G MALAT1 RNA 0.15 TCGA-CV-6961-01 11 65272459 65272459 G A MALAT1 RNA 0.30 TCGA-CV-6961-01 11 65272480 65272480 G A MALAT1 RNA 0.27 TCGA-CV-6961-01 11 65272556 65272556 G A MALAT1 RNA 0.25 TCGA-CV-6961-01 11 65272679 65272679 G A MALAT1 RNA 0.25 TCGA-CV-6961-01 11 65272755 65272755 G T MALAT1 RNA 0.21 TCGA-CV-6961-01 11 65272832 65272832 G A MALAT1 RNA 0.14 TCGA-CV-6961-01 11 65272924 65272924 G A MALAT1 RNA 0.18 TCGA-CV-6961-01 11 65272931 65272931 G A MALAT1 RNA 0.17 TCGA-CV-6961-01 11 65272949 65272949 G A MALAT1 RNA 0.17 TCGA-CV-6961-01 11 65273081 65273081 G A MALAT1 RNA 0.19 TCGA-CV-6961-01 11 65273364 65273364 G C MALAT1 RNA 0.24 TCGA-CV-6961-01 11 65273372 65273372 G C MALAT1 RNA 0.24 TCGA-CV-6961-01 11 66051034 66051034 C G CNIH2 Intron 0.27 TCGA-CV-6961-01 11 67254633 67254633 G C AIP Missense_Mutation p.A86P 0.08 deleterious(0.02) probably_damaging(0.918) TCGA-CV-6961-01 11 72409008 72409008 G A ARAP1 Silent p.F895F 0.15 TCGA-CV-6961-01 11 74546869 74546869 C G RNF169 Missense_Mutation p.I407M 0.24 deleterious(0) probably_damaging(0.997) TCGA-CV-6961-01 11 76062393 76062393 C T PRKRIR Missense_Mutation p.A601T 0.29 deleterious(0.02) benign(0.117) TCGA-CV-6961-01 11 76873901 76873901 C T MYO7A Silent p.G519G 0.30 TCGA-CV-6961-01 11 77920693 77920693 C G USP35 Missense_Mutation p.L598V 0.07 deleterious(0.03) unknown(0) TCGA-CV-6961-01 11 8008839 8008839 C G EIF3F 5'UTR 0.15 TCGA-CV-6961-01 11 9087482 9087482 G A SCUBE2 Missense_Mutation p.S269L 0.23 deleterious(0.03) benign(0.007) TCGA-CV-6961-01 11 9829600 9829600 G A SBF2 Nonsense_Mutation p.Q1464* 0.17 TCGA-CV-6961-01 12 102471251 102471251 G A NUP37 Missense_Mutation p.R191W 0.24 deleterious(0) probably_damaging(0.992) TCGA-CV-6961-01 12 104129353 104129353 G A STAB2 Missense_Mutation p.D1849N 0.21 tolerated(0.76) benign(0.015) TCGA-CV-6961-01 12 10570960 10570960 C G KLRC3 Missense_Mutation p.D157H 0.27 deleterious(0) probably_damaging(0.971) TCGA-CV-6961-01 12 109306418 109306418 C A SVOP Missense_Mutation p.G449C 0.36 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 12 120241085 120241085 G A CIT Missense_Mutation p.S407L 0.27 tolerated(0.16) benign(0.01) TCGA-CV-6961-01 12 120635242 120635242 G C RPLP0 Silent p.V225V 0.33 TCGA-CV-6961-01 12 121093905 121093905 G C CABP1 Intron 0.20 TCGA-CV-6961-01 12 122750886 122750886 G T VPS33A Missense_Mutation p.R24S 0.20 tolerated(0.14) benign(0.024) TCGA-CV-6961-01 12 122958596 122958596 C T ZCCHC8 Silent p.Q524Q 0.32 TCGA-CV-6961-01 12 124298073 124298073 C G DNAH10 Silent p.L1051L 0.23 TCGA-CV-6961-01 12 12874066 12874066 C A CDKN1B 3'UTR 0.19 TCGA-CV-6961-01 12 133248806 133248806 C T POLE Missense_Mutation p.E597K 0.15 tolerated(0.09) benign(0.008) TCGA-CV-6961-01 12 133732691 133732691 C T ZNF10 Missense_Mutation p.H287Y 0.29 tolerated(0.08) probably_damaging(0.999) TCGA-CV-6961-01 12 14959195 14959195 G A SMCO3 Silent p.V140V 0.04 TCGA-CV-6961-01 12 20799804 20799804 C A PDE3A Missense_Mutation p.L829M 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 12 21358889 21358889 C G SLCO1B1 Silent p.V473V 0.11 TCGA-CV-6961-01 12 26377309 26377309 G C SSPN Missense_Mutation p.M121I 0.22 tolerated(0.35) benign(0.175) TCGA-CV-6961-01 12 27834486 27834486 G C PPFIBP1 Missense_Mutation p.D641H 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 12 29649538 29649538 G C OVCH1 Missense_Mutation p.S45C 0.29 deleterious(0.01) probably_damaging(0.935) TCGA-CV-6961-01 12 32135670 32135670 C G KIAA1551 Missense_Mutation p.T594S 0.41 tolerated(0.34) benign(0.163) TCGA-CV-6961-01 12 45269417 45269417 C G NELL2 Intron 0.17 TCGA-CV-6961-01 12 46231439 46231439 G A ARID2 Missense_Mutation p.E427K 0.31 tolerated(0.08) possibly_damaging(0.827) TCGA-CV-6961-01 12 4736776 4736776 C G AKAP3 Missense_Mutation p.R431T 0.15 deleterious(0) possibly_damaging(0.82) TCGA-CV-6961-01 12 48143273 48143273 G A RAPGEF3 Missense_Mutation p.A314V 0.12 deleterious(0) probably_damaging(0.989) TCGA-CV-6961-01 12 48920205 48920205 C T OR8S1 Missense_Mutation p.S264L 0.25 deleterious(0.04) benign(0.261) TCGA-CV-6961-01 12 49088089 49088089 G A CCNT1 Missense_Mutation p.S303L 0.33 deleterious(0.01) probably_damaging(0.91) TCGA-CV-6961-01 12 49315828 49315828 C G FKBP11 Missense_Mutation p.R182T 0.06 tolerated_low_confidence(0.58) benign(0.001) TCGA-CV-6961-01 12 50035744 50035744 C T PRPF40B Silent p.V607V 0.28 TCGA-CV-6961-01 12 52910942 52910942 C G KRT5 Missense_Mutation p.M389I 0.20 tolerated(0.39) benign(0.006) TCGA-CV-6961-01 12 55688558 55688558 G A OR6C6 Silent p.I153I 0.12 TCGA-CV-6961-01 12 56363256 56363256 C T CDK2 Intron 0.18 TCGA-CV-6961-01 12 56740694 56740694 C A STAT2 Silent p.L590L 0.17 TCGA-CV-6961-01 12 57081762 57081762 C T PTGES3 Intron 0.16 TCGA-CV-6961-01 12 57106570 57106570 C T NACA Missense_Mutation p.M921I 0.17 deleterious_low_confidence(0.01) benign(0.12) TCGA-CV-6961-01 12 57106606 57106606 C T NACA Silent p.L909L 0.15 TCGA-CV-6961-01 12 57106659 57106659 C G NACA Missense_Mutation p.E892Q 0.10 deleterious_low_confidence(0) possibly_damaging(0.45) TCGA-CV-6961-01 12 57106861 57106861 C G NACA Missense_Mutation p.E875D 0.14 deleterious_low_confidence(0.03) benign(0.12) TCGA-CV-6961-01 12 57107318 57107318 C T NACA Intron 0.20 TCGA-CV-6961-01 12 57108149 57108149 C A NACA Silent p.R787R 0.17 TCGA-CV-6961-01 12 57110190 57110190 C G NACA Intron 0.23 TCGA-CV-6961-01 12 57110480 57110480 C T NACA Intron 0.29 TCGA-CV-6961-01 12 57110522 57110522 C G NACA Intron 0.15 TCGA-CV-6961-01 12 57110609 57110609 C G NACA Intron 0.25 TCGA-CV-6961-01 12 57110634 57110634 C G NACA Intron 0.29 TCGA-CV-6961-01 12 57111479 57111479 C G NACA Intron 0.26 TCGA-CV-6961-01 12 57112180 57112180 C T NACA Intron 0.45 TCGA-CV-6961-01 12 57112459 57112459 C T NACA Intron 0.23 TCGA-CV-6961-01 12 57112997 57112997 C A NACA Intron 0.36 TCGA-CV-6961-01 12 57484986 57484986 C A NAB2 Silent p.L54L 0.19 TCGA-CV-6961-01 12 57857788 57857788 C G GLI1 Missense_Mutation p.S36C 0.17 deleterious(0) possibly_damaging(0.653) TCGA-CV-6961-01 12 58112070 58112070 G C OS9 Missense_Mutation p.D426H 0.07 deleterious(0) possibly_damaging(0.491) TCGA-CV-6961-01 12 6499994 6499994 C G LTBR Missense_Mutation p.S400C 0.31 deleterious(0.04) benign(0.111) TCGA-CV-6961-01 12 662840 662840 G A B4GALNT3 Missense_Mutation p.G584E 0.21 tolerated(0.47) benign(0.001) TCGA-CV-6961-01 12 70049452 70049452 C G BEST3 Missense_Mutation p.R414S 0.18 tolerated(1) benign(0.001) TCGA-CV-6961-01 12 7054986 7054986 G A C12orf57 Silent p.E94E 0.23 TCGA-CV-6961-01 12 7260991 7260991 C T C1RL Silent p.L52L 0.25 TCGA-CV-6961-01 12 85450679 85450679 C G LRRIQ1 Missense_Mutation p.S703C 0.27 tolerated(0.08) benign(0.092) TCGA-CV-6961-01 12 85500377 85500377 C T LRRIQ1 Nonsense_Mutation p.Q1121* 0.14 TCGA-CV-6961-01 12 91358091 91358091 G A EPYC Silent p.L271L 0.19 TCGA-CV-6961-01 12 93163911 93163911 G C PLEKHG7 Missense_Mutation p.K360N 0.27 deleterious(0.05) benign(0.013) TCGA-CV-6961-01 12 93793193 93793193 C T NUDT4 3'UTR 0.10 TCGA-CV-6961-01 13 100622424 100622424 G A ZIC5 Silent p.F502F 0.19 TCGA-CV-6961-01 13 111293826 111293826 G C CARS2 3'UTR 0.42 TCGA-CV-6961-01 13 25348972 25348972 A C RNF17 Silent p.R83R 0.35 TCGA-CV-6961-01 13 28196057 28196057 C T POLR1D 5'UTR 0.36 TCGA-CV-6961-01 13 31232715 31232715 C T USPL1 Missense_Mutation p.S834L 0.20 tolerated(0.44) benign(0.004) TCGA-CV-6961-01 13 33703293 33703293 G T STARD13 Silent p.V507V 0.20 TCGA-CV-6961-01 13 47466711 47466711 G A HTR2A Silent p.L143L 0.20 TCGA-CV-6961-01 13 49796350 49796350 C T MLNR Missense_Mutation p.S359L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 13 52593181 52593181 G A ALG11 Silent p.G59G 0.27 TCGA-CV-6961-01 13 58208612 58208612 G T PCDH17 Missense_Mutation p.E644D 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 14 100743853 100743853 C T YY1 Silent p.F387F 0.25 TCGA-CV-6961-01 14 104245125 104245125 C G PPP1R13B Missense_Mutation p.R104T 0.26 tolerated(0.07) benign(0.066) TCGA-CV-6961-01 14 105716079 105716079 C T BTBD6 Silent p.V176V 0.09 TCGA-CV-6961-01 14 105716585 105716585 C A BTBD6 Missense_Mutation p.A345D 0.23 tolerated(0.35) probably_damaging(0.984) TCGA-CV-6961-01 14 106725254 106725254 G T IGHV3-23 Missense_Mutation p.L100M 0.11 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-CV-6961-01 14 21556189 21556189 C A ARHGEF40 Missense_Mutation p.Q1484K 0.18 deleterious_low_confidence(0.02) benign(0.07) TCGA-CV-6961-01 14 21827748 21827748 C G SUPT16H Missense_Mutation p.K732N 0.27 deleterious(0.02) possibly_damaging(0.45) TCGA-CV-6961-01 14 23523752 23523752 G C CDH24 Silent p.L249L 0.31 TCGA-CV-6961-01 14 23548138 23548138 C G ACIN1 Missense_Mutation p.C691S 0.18 benign(0) TCGA-CV-6961-01 14 23549752 23549752 C G ACIN1 Missense_Mutation p.E322D 0.26 benign(0.32) TCGA-CV-6961-01 14 24884017 24884017 C G NYNRIN Missense_Mutation p.S1021C 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-CV-6961-01 14 39716595 39716595 C T MIA2 Nonsense_Mutation p.Q273* 0.20 TCGA-CV-6961-01 14 55474026 55474026 C T WDHD1 Missense_Mutation p.R191K 0.20 tolerated(0.1) possibly_damaging(0.874) TCGA-CV-6961-01 14 64746790 64746790 G A ESR2 Silent p.F148F 0.17 TCGA-CV-6961-01 14 69805378 69805378 C G GALNT16 Missense_Mutation p.F326L 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-CV-6961-01 14 79432618 79432618 G A NRXN3 Silent p.L509L 0.18 TCGA-CV-6961-01 14 92469778 92469778 C T TRIP11 Silent p.L1514L 0.10 TCGA-CV-6961-01 14 92469811 92469811 C T TRIP11 Missense_Mutation p.M1503I 0.19 tolerated(0.27) benign(0.099) TCGA-CV-6961-01 14 92469841 92469841 C T TRIP11 Silent p.L1493L 0.18 TCGA-CV-6961-01 14 92470322 92470322 C T TRIP11 Missense_Mutation p.S1333N 0.16 tolerated(0.56) benign(0.001) TCGA-CV-6961-01 14 92470328 92470328 C G TRIP11 Missense_Mutation p.R1331T 0.13 tolerated(0.48) benign(0.002) TCGA-CV-6961-01 14 92470587 92470587 C G TRIP11 Missense_Mutation p.E1245Q 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6961-01 14 92470704 92470704 C T TRIP11 Missense_Mutation p.E1206K 0.19 deleterious(0.03) probably_damaging(0.981) TCGA-CV-6961-01 14 92471001 92471001 C T TRIP11 Missense_Mutation p.E1107K 0.23 tolerated(0.06) benign(0.161) TCGA-CV-6961-01 14 92471131 92471131 C T TRIP11 Silent p.Q1063Q 0.24 TCGA-CV-6961-01 14 92471181 92471181 C G TRIP11 Missense_Mutation p.D1047H 0.18 deleterious(0) probably_damaging(0.996) TCGA-CV-6961-01 14 92471470 92471470 C T TRIP11 Missense_Mutation p.M950I 0.12 deleterious(0.02) possibly_damaging(0.866) TCGA-CV-6961-01 14 92471478 92471478 C T TRIP11 Missense_Mutation p.E948K 0.13 deleterious(0.02) probably_damaging(0.987) TCGA-CV-6961-01 14 92471517 92471517 C G TRIP11 Missense_Mutation p.E935Q 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-CV-6961-01 14 92471562 92471562 C T TRIP11 Missense_Mutation p.E920K 0.21 deleterious(0.02) possibly_damaging(0.447) TCGA-CV-6961-01 14 92471643 92471643 C T TRIP11 Missense_Mutation p.E893K 0.17 deleterious(0) possibly_damaging(0.592) TCGA-CV-6961-01 14 92488028 92488028 G A TRIP11 Missense_Mutation p.P154S 0.20 tolerated(0.69) benign(0.004) TCGA-CV-6961-01 14 93022127 93022127 G C RIN3 Missense_Mutation p.E26Q 0.38 tolerated(0.23) unknown(0) TCGA-CV-6961-01 14 94041424 94041424 C G UNC79 Missense_Mutation p.I520M 0.30 deleterious(0) probably_damaging(0.998) TCGA-CV-6961-01 14 96829400 96829400 G A ATG2B 5'UTR 0.16 TCGA-CV-6961-01 15 100943007 100943007 C G CERS3 Missense_Mutation p.E355Q 0.23 tolerated(0.14) benign(0.355) TCGA-CV-6961-01 15 22850972 22850972 C T TUBGCP5 Silent p.L412L 0.33 TCGA-CV-6961-01 15 22935917 22935917 G A CYFIP1 Missense_Mutation p.D285N 0.15 deleterious(0.03) benign(0.005) TCGA-CV-6961-01 15 28463722 28463722 G A HERC2 Missense_Mutation p.H1981Y 0.33 benign(0) TCGA-CV-6961-01 15 31338418 31338418 G C TRPM1 Missense_Mutation p.L612V 0.28 deleterious(0.04) probably_damaging(0.935) TCGA-CV-6961-01 15 40849428 40849428 C G C15orf57 Missense_Mutation p.D139H 0.31 deleterious(0) probably_damaging(0.973) TCGA-CV-6961-01 15 43815940 43815940 G A MAP1A Missense_Mutation p.D757N 0.37 possibly_damaging(0.864) TCGA-CV-6961-01 15 59181735 59181735 C T SLTM Missense_Mutation p.E700K 0.34 deleterious(0) unknown(0) TCGA-CV-6961-01 15 62228879 62228879 G A VPS13C Missense_Mutation p.S1891L 0.31 tolerated(0.07) benign(0.005) TCGA-CV-6961-01 15 65152104 65152104 C G AC069368.3 Missense_Mutation p.I97M 0.19 tolerated(0.12) probably_damaging(0.97) TCGA-CV-6961-01 15 70959538 70959538 G C UACA Missense_Mutation p.S1162C 0.32 deleterious(0) possibly_damaging(0.823) TCGA-CV-6961-01 15 72460095 72460095 G T GRAMD2 Silent p.L118L 0.21 TCGA-CV-6961-01 15 72582528 72582528 G A CELF6 Nonsense_Mutation p.Q155* 0.30 TCGA-CV-6961-01 15 72643480 72643480 C A HEXA Missense_Mutation p.M222I 0.22 deleterious(0) benign(0.044) TCGA-CV-6961-01 15 73002044 73002044 C T BBS4 Missense_Mutation p.P27L 0.22 deleterious(0.01) benign(0.03) TCGA-CV-6961-01 15 78894511 78894511 G T CHRNA3 Missense_Mutation p.S158Y 0.06 deleterious(0.04) probably_damaging(1) TCGA-CV-6961-01 15 79296198 79296198 C T RASGRF1 Missense_Mutation p.E815K 0.26 deleterious_low_confidence(0.04) benign(0.008) TCGA-CV-6961-01 15 81172054 81172054 C G KIAA1199 Intron 0.22 TCGA-CV-6961-01 15 83518566 83518566 C T HOMER2 Silent p.L322L 0.32 TCGA-CV-6961-01 15 83687528 83687528 G A BTBD1 Silent p.F407F 0.20 TCGA-CV-6961-01 15 85370749 85370749 G C ALPK3 Missense_Mutation p.E275Q 0.11 deleterious(0) probably_damaging(0.917) TCGA-CV-6961-01 15 85405874 85405874 G A ALPK3 Missense_Mutation p.E1582K 0.24 deleterious(0) probably_damaging(0.997) TCGA-CV-6961-01 15 85407691 85407691 G A ALPK3 Silent p.L1708L 0.37 TCGA-CV-6961-01 15 86118486 86118486 C G AKAP13 Missense_Mutation p.H263D 0.26 tolerated(0.24) benign(0.032) TCGA-CV-6961-01 15 90144539 90144539 C G TICRR Missense_Mutation p.Q722E 0.14 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 15 91161162 91161162 C T CRTC3 Missense_Mutation p.P221S 0.19 tolerated(0.59) benign(0.246) TCGA-CV-6961-01 15 91448544 91448544 G T MAN2A2 Nonsense_Mutation p.E66* 0.23 TCGA-CV-6961-01 15 99459287 99459287 G C IGF1R Silent p.L641L 0.24 TCGA-CV-6961-01 16 11370258 11370258 G A PRM2 5'UTR 0.41 TCGA-CV-6961-01 16 15457692 15457692 G T NPIPA5 Missense_Mutation p.L293I 0.09 tolerated(0.08) benign(0.253) TCGA-CV-6961-01 16 1797130 1797130 C T MAPK8IP3 Missense_Mutation p.S282L 0.35 deleterious(0.04) benign(0.047) TCGA-CV-6961-01 16 18865140 18865140 G C SMG1 Missense_Mutation p.F1511L 0.33 tolerated(0.39) benign(0.024) TCGA-CV-6961-01 16 19659193 19659193 C T C16orf62 Nonsense_Mutation p.Q762* 0.24 TCGA-CV-6961-01 16 223621 223621 C T HBA2 3'UTR 0.22 TCGA-CV-6961-01 16 27375021 27375021 C T IL4R Missense_Mutation p.S783L 0.25 tolerated(1) benign(0) TCGA-CV-6961-01 16 27789012 27789012 G C KIAA0556 Missense_Mutation p.E1545Q 0.21 deleterious(0) possibly_damaging(0.907) TCGA-CV-6961-01 16 28997455 28997455 G C LAT Splice_Site p.X91_splice 0.29 TCGA-CV-6961-01 16 29994478 29994478 C G TAOK2 Missense_Mutation p.S362C 0.31 deleterious(0) probably_damaging(0.971) TCGA-CV-6961-01 16 30116264 30116264 C T GDPD3 Missense_Mutation p.V296I 0.23 tolerated(0.18) benign(0.126) TCGA-CV-6961-01 16 31121565 31121565 G A BCKDK Missense_Mutation p.V155M 0.21 deleterious(0.01) possibly_damaging(0.794) TCGA-CV-6961-01 16 31121725 31121725 G A BCKDK Missense_Mutation p.E183K 0.23 tolerated(0.15) benign(0.159) TCGA-CV-6961-01 16 31213943 31213943 G A C16orf98 Missense_Mutation p.E57K 0.15 unknown(0) TCGA-CV-6961-01 16 5112511 5112511 G A C16orf89 Silent p.R91R 0.26 TCGA-CV-6961-01 16 57786709 57786709 G C KATNB1 Missense_Mutation p.D242H 0.12 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 16 67237075 67237075 G C ELMO3 Missense_Mutation p.D630H 0.25 deleterious(0) probably_damaging(0.993) TCGA-CV-6961-01 16 68961608 68961608 C A TANGO6 Silent p.A755A 0.09 TCGA-CV-6961-01 16 69152431 69152431 G C CHTF8 3'UTR 0.20 TCGA-CV-6961-01 16 71512138 71512138 G A ZNF19 Silent p.V89V 0.19 TCGA-CV-6961-01 16 81078338 81078338 C G ATMIN Silent p.V745V 0.09 TCGA-CV-6961-01 16 81388253 81388253 C G GAN Missense_Mutation p.Q176E 0.30 tolerated(1) benign(0.001) TCGA-CV-6961-01 16 83636065 83636065 G C CDH13 Missense_Mutation p.E370Q 0.22 tolerated(1) benign(0.392) TCGA-CV-6961-01 16 8873373 8873373 G A ABAT Missense_Mutation p.R436Q 0.13 tolerated(0.33) benign(0.014) TCGA-CV-6961-01 16 8875251 8875251 C A ABAT Silent p.L489L 0.26 TCGA-CV-6961-01 16 89858379 89858379 G C FANCA Missense_Mutation p.S394C 0.23 deleterious(0) possibly_damaging(0.7) TCGA-CV-6961-01 16 89930015 89930015 G T SPIRE2 Silent p.G569G 0.16 TCGA-CV-6961-01 16 9210763 9210763 G A C16orf72 Missense_Mutation p.M274I 0.13 deleterious(0.03) benign(0.032) TCGA-CV-6961-01 16 9210767 9210767 T A C16orf72 Nonstop_Mutation p.*276Kext*54 0.14 TCGA-CV-6961-01 17 12823101 12823101 G A ARHGAP44 Silent p.R139R 0.20 TCGA-CV-6961-01 17 17398763 17398763 G A RASD1 Silent p.F174F 0.36 TCGA-CV-6961-01 17 17921887 17921887 G C ATPAF2 Silent p.V282V 0.25 TCGA-CV-6961-01 17 26879514 26879514 G A UNC119 Missense_Mutation p.S21L 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.602) TCGA-CV-6961-01 17 27001375 27001375 G C SUPT6H Missense_Mutation p.D62H 0.24 tolerated_low_confidence(0.09) unknown(0) TCGA-CV-6961-01 17 27244465 27244465 C G PHF12 Silent p.L324L 0.17 TCGA-CV-6961-01 17 28789469 28789469 C G CPD Missense_Mutation p.L1300V 0.30 tolerated(0.12) possibly_damaging(0.81) TCGA-CV-6961-01 17 30376383 30376383 G C LRRC37B Missense_Mutation p.Q882H 0.29 tolerated(0.06) benign(0) TCGA-CV-6961-01 17 32583786 32583786 G C CCL2 Missense_Mutation p.Q80H 0.33 deleterious(0.02) benign(0.248) TCGA-CV-6961-01 17 36499096 36499096 C T GPR179 Missense_Mutation p.D193N 0.19 tolerated(0.07) benign(0.374) TCGA-CV-6961-01 17 37842184 37842184 G A PGAP3 Silent p.F90F 0.17 TCGA-CV-6961-01 17 4009037 4009037 G C ZZEF1 Silent p.L448L 0.28 TCGA-CV-6961-01 17 40714573 40714573 C T COASY Intron 0.28 TCGA-CV-6961-01 17 40936541 40936541 G C WNK4 Missense_Mutation p.E372Q 0.14 deleterious(0) unknown(0) TCGA-CV-6961-01 17 42327722 42327722 C G SLC4A1 3'UTR 0.13 TCGA-CV-6961-01 17 42475439 42475439 G A GPATCH8 Silent p.L1336L 0.16 TCGA-CV-6961-01 17 46685395 46685395 C A HOXB7 Nonsense_Mutation p.E155* 0.24 TCGA-CV-6961-01 17 48683370 48683370 G C CACNA1G Missense_Mutation p.D1470H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 17 48684289 48684289 C G CACNA1G Missense_Mutation p.S1484C 0.27 tolerated(0.1) probably_damaging(0.998) TCGA-CV-6961-01 17 54893308 54893308 G A C17orf67 5'UTR 0.17 TCGA-CV-6961-01 17 56247319 56247319 C G OR4D2 Missense_Mutation p.I101M 0.07 tolerated(0.77) benign(0.153) TCGA-CV-6961-01 17 60814708 60814708 G C MARCH10 Intron 0.27 TCGA-CV-6961-01 17 65026887 65026887 G A CACNG4 Missense_Mutation p.E251K 0.29 tolerated(0.08) possibly_damaging(0.852) TCGA-CV-6961-01 17 6665494 6665494 G A XAF1 Missense_Mutation p.E148K 0.35 tolerated(0.22) benign(0.03) TCGA-CV-6961-01 17 7139717 7139717 G A PHF23 Missense_Mutation p.P177S 0.28 deleterious_low_confidence(0.04) probably_damaging(0.968) TCGA-CV-6961-01 17 74018542 74018542 C T EVPL Silent p.Q186Q 0.06 TCGA-CV-6961-01 17 76455098 76455098 G A DNAH17 Silent p.I3268I 0.25 TCGA-CV-6961-01 17 76455962 76455962 G A DNAH17 Missense_Mutation p.A3172V 0.55 possibly_damaging(0.844) TCGA-CV-6961-01 17 7752328 7752328 C T KDM6B Missense_Mutation p.R908C 0.35 possibly_damaging(0.855) TCGA-CV-6961-01 17 78358943 78358943 C T RNF213 Silent p.I4809I 0.20 TCGA-CV-6961-01 17 79563226 79563226 C G NPLOC4 Missense_Mutation p.D346H 0.29 tolerated(1) benign(0.009) TCGA-CV-6961-01 17 79813047 79813047 C G P4HB Missense_Mutation p.D199H 0.24 tolerated(0.13) benign(0.015) TCGA-CV-6961-01 17 79916266 79916266 G A NOTUM Silent p.F179F 0.20 TCGA-CV-6961-01 17 79973108 79973108 C G ASPSCR1 Missense_Mutation p.S504C 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.709) TCGA-CV-6961-01 17 80044282 80044282 G C FASN Missense_Mutation p.L1194V 0.32 tolerated(0.07) benign(0.271) TCGA-CV-6961-01 17 80352382 80352382 T A OGFOD3 Missense_Mutation p.Q287H 0.22 tolerated_low_confidence(0.32) benign(0.387) TCGA-CV-6961-01 17 80405459 80405459 C T C17orf62 Missense_Mutation p.G42R 0.20 tolerated(0.26) possibly_damaging(0.894) TCGA-CV-6961-01 17 80790179 80790179 T - ZNF750 Frame_Shift_Del p.N51Tfs*5 0.34 TCGA-CV-6961-01 18 12028874 12028874 C T IMPA2 Silent p.L211L 0.39 TCGA-CV-6961-01 18 19429231 19429231 C G MIB1 Nonsense_Mutation p.S823* 0.28 TCGA-CV-6961-01 18 19761413 19761413 G A GATA6 Splice_Site p.X435_splice 0.18 TCGA-CV-6961-01 18 21404467 21404467 G C LAMA3 Missense_Mutation p.D837H 0.29 benign(0.043) TCGA-CV-6961-01 18 46906126 46906126 C A DYM Nonsense_Mutation p.E66* 0.25 TCGA-CV-6961-01 18 47808822 47808822 C G CXXC1 3'UTR 0.26 TCGA-CV-6961-01 18 67801735 67801735 G A RTTN Silent p.F976F 0.29 TCGA-CV-6961-01 18 73122767 73122767 G C SMIM21 3'UTR 0.20 TCGA-CV-6961-01 19 11266370 11266370 C G SPC24 Missense_Mutation p.R28P 0.23 deleterious(0.01) probably_damaging(0.934) TCGA-CV-6961-01 19 12060474 12060474 C T ZNF700 Silent p.F545F 0.20 TCGA-CV-6961-01 19 1220487 1220487 G A STK11 Missense_Mutation p.D194N 0.42 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 19 1221279 1221279 G A STK11 Missense_Mutation p.G268R 0.38 deleterious(0.02) possibly_damaging(0.873) TCGA-CV-6961-01 19 13247198 13247198 G T NACC1 Nonsense_Mutation p.E367* 0.21 TCGA-CV-6961-01 19 13247207 13247207 G C NACC1 Missense_Mutation p.E370Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 19 14000824 14000824 G C C19orf57 Nonsense_Mutation p.S282* 0.12 TCGA-CV-6961-01 19 14020719 14020719 C T CC2D1A Silent p.F48F 0.22 TCGA-CV-6961-01 19 15222217 15222217 G A SYDE1 Missense_Mutation p.E462K 0.07 deleterious(0.02) probably_damaging(1) TCGA-CV-6961-01 19 1585105 1585105 C T MBD3 Silent p.K73K 0.18 TCGA-CV-6961-01 19 18543509 18543509 G C SSBP4 Splice_Site p.X251_splice 0.33 TCGA-CV-6961-01 19 19625897 19625897 C T TSSK6 Missense_Mutation p.D114N 0.29 tolerated(0.25) benign(0.005) TCGA-CV-6961-01 19 33183199 33183199 G A NUDT19 Silent p.K111K 0.33 TCGA-CV-6961-01 19 35502416 35502416 C T GRAMD1A Silent p.F188F 0.09 TCGA-CV-6961-01 19 35761375 35761375 A G USF2 Missense_Mutation p.N152S 0.29 tolerated(0.28) possibly_damaging(0.878) TCGA-CV-6961-01 19 36037925 36037925 C T TMEM147 Silent p.I141I 0.16 TCGA-CV-6961-01 19 37726940 37726940 A G ZNF383 Missense_Mutation p.M66V 0.26 tolerated(0.2) benign(0.004) TCGA-CV-6961-01 19 39101700 39101700 C G MAP4K1 Missense_Mutation p.K267N 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 19 39103253 39103253 G A MAP4K1 Silent p.L221L 0.33 TCGA-CV-6961-01 19 39327346 39327346 C T HNRNPL 3'UTR 0.24 TCGA-CV-6961-01 19 40519724 40519724 G C ZNF546 Missense_Mutation p.E183Q 0.40 tolerated(0.23) benign(0.403) TCGA-CV-6961-01 19 41125251 41125251 G A LTBP4 Splice_Site p.X1090_splice 0.26 TCGA-CV-6961-01 19 41257373 41257373 G C SNRPA Missense_Mutation p.K20N 0.33 deleterious(0) possibly_damaging(0.854) TCGA-CV-6961-01 19 41630772 41630772 C T CYP2F1 Silent p.V371V 0.15 TCGA-CV-6961-01 19 44251656 44251656 G T SMG9 Missense_Mutation p.R176S 0.06 tolerated(0.35) benign(0.019) TCGA-CV-6961-01 19 45683082 45683082 C G BLOC1S3 Missense_Mutation p.I176M 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-CV-6961-01 19 46056955 46056955 C G OPA3 Intron 0.22 TCGA-CV-6961-01 19 47124525 47124525 C G PTGIR 3'UTR 0.19 TCGA-CV-6961-01 19 47763996 47763996 G A CCDC9 Missense_Mutation p.R121Q 0.33 tolerated(0.25) benign(0.024) TCGA-CV-6961-01 19 48185361 48185361 C T GLTSCR1 Silent p.L745L 0.30 TCGA-CV-6961-01 19 49657579 49657579 C G HRC Missense_Mutation p.D306H 0.23 deleterious(0) probably_damaging(0.979) TCGA-CV-6961-01 19 49967126 49967126 G A ALDH16A1 Missense_Mutation p.D372N 0.17 tolerated(0.22) benign(0.41) TCGA-CV-6961-01 19 51410250 51410250 A C KLK4 Silent p.G235G 0.25 TCGA-CV-6961-01 19 52793884 52793884 C T ZNF766 Silent p.F280F 0.22 TCGA-CV-6961-01 19 53454424 53454424 G A ZNF816 Missense_Mutation p.H202Y 0.21 tolerated(0.36) benign(0.077) TCGA-CV-6961-01 19 54203354 54203354 G C MIR518F RNA 0.18 TCGA-CV-6961-01 19 54744933 54744933 G A LILRA6 Silent p.L243L 0.12 TCGA-CV-6961-01 19 55401037 55401037 G A FCAR Silent p.T224T 0.25 TCGA-CV-6961-01 19 55401049 55401049 G C FCAR Missense_Mutation p.L228F 0.26 tolerated(0.07) possibly_damaging(0.58) TCGA-CV-6961-01 19 56133815 56133815 C T ZNF784 Missense_Mutation p.E92K 0.21 deleterious(0.03) benign(0.125) TCGA-CV-6961-01 19 58233748 58233748 C A ZNF671 Missense_Mutation p.W108C 0.04 tolerated(0.05) benign(0.006) TCGA-CV-6961-01 19 58921347 58921347 G C ZNF584 Missense_Mutation p.E20Q 0.22 deleterious(0) probably_damaging(0.951) TCGA-CV-6961-01 19 873569 873569 G C MED16 Silent p.V595V 0.37 TCGA-CV-6961-01 19 9000195 9000195 T C MUC16 Missense_Mutation p.N13521S 0.42 probably_damaging(0.92) TCGA-CV-6961-01 19 9011341 9011341 C T MUC16 Silent p.R12964R 0.23 TCGA-CV-6961-01 19 9047213 9047213 G A MUC16 Missense_Mutation p.T11473I 0.35 benign(0.027) TCGA-CV-6961-01 1 100346890 100346890 C T AGL Missense_Mutation p.P682S 0.23 tolerated(0.34) benign(0.002) TCGA-CV-6961-01 1 100366244 100366244 C G AGL Missense_Mutation p.L1139V 0.19 deleterious(0.02) probably_damaging(1) TCGA-CV-6961-01 1 1019467 1019467 C T C1orf159 Intron 0.12 TCGA-CV-6961-01 1 109191450 109191450 G C HENMT1 Nonsense_Mutation p.S307* 0.13 TCGA-CV-6961-01 1 109461321 109461321 G A GPSM2 Silent p.L450L 0.13 TCGA-CV-6961-01 1 109795615 109795615 G A CELSR2 Missense_Mutation p.D972N 0.26 tolerated(0.05) probably_damaging(0.944) TCGA-CV-6961-01 1 116577934 116577934 G A SLC22A15 Silent p.L357L 0.30 TCGA-CV-6961-01 1 118483837 118483837 C G WDR3 Missense_Mutation p.L294V 0.09 tolerated(0.08) benign(0.098) TCGA-CV-6961-01 1 1268701 1268701 C G TAS1R3 Missense_Mutation p.F514L 0.31 deleterious(0.03) possibly_damaging(0.905) TCGA-CV-6961-01 1 12918895 12918895 G C PRAMEF2 Missense_Mutation p.E11Q 0.18 deleterious(0.05) benign(0.086) TCGA-CV-6961-01 1 145368591 145368591 C T NBPF10 Silent p.I3523I 0.11 TCGA-CV-6961-01 1 146756150 146756150 G A CHD1L Missense_Mutation p.R611Q 0.20 deleterious(0.01) possibly_damaging(0.69) TCGA-CV-6961-01 1 150551469 150551469 C T MCL1 Missense_Mutation p.E180K 0.29 deleterious(0.04) benign(0.119) TCGA-CV-6961-01 1 152282333 152282333 G C FLG Missense_Mutation p.P1677A 0.22 possibly_damaging(0.822) TCGA-CV-6961-01 1 152283709 152283709 C G FLG Missense_Mutation p.R1218T 0.24 benign(0.227) TCGA-CV-6961-01 1 152283989 152283989 C T FLG Missense_Mutation p.E1125K 0.29 benign(0.292) TCGA-CV-6961-01 1 152323370 152323370 G A FLG2 Missense_Mutation p.H2298Y 0.07 benign(0.153) TCGA-CV-6961-01 1 152732722 152732722 C T KPRP Nonsense_Mutation p.Q220* 0.06 TCGA-CV-6961-01 1 153580541 153580541 G C S100A16 Silent p.V29V 0.23 TCGA-CV-6961-01 1 153587810 153587810 G C S100A14 Missense_Mutation p.I26M 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 1 153661438 153661438 C T NPR1 Silent p.S809S 0.23 TCGA-CV-6961-01 1 153790563 153790563 G A GATAD2B Missense_Mutation p.R228W 0.26 deleterious(0) possibly_damaging(0.582) TCGA-CV-6961-01 1 153911479 153911479 G C DENND4B Missense_Mutation p.S621C 0.16 tolerated(0.06) benign(0.004) TCGA-CV-6961-01 1 154246316 154246316 C G HAX1 Nonsense_Mutation p.S128* 0.21 TCGA-CV-6961-01 1 155295461 155295461 C T RUSC1 Silent p.L604L 0.38 TCGA-CV-6961-01 1 156621404 156621404 C T BCAN Missense_Mutation p.S407F 0.10 deleterious(0.04) probably_damaging(0.998) TCGA-CV-6961-01 1 156621405 156621405 C T BCAN Silent p.S407S 0.10 TCGA-CV-6961-01 1 157556066 157556066 C G FCRL4 Missense_Mutation p.E343Q 0.23 deleterious(0.03) possibly_damaging(0.611) TCGA-CV-6961-01 1 15983119 15983119 G A DDI2 Silent p.Q397Q 0.29 TCGA-CV-6961-01 1 160970527 160970527 G A F11R Silent p.I94I 0.16 TCGA-CV-6961-01 1 161199674 161199674 C G NR1I3 Silent p.R329R 0.25 TCGA-CV-6961-01 1 161476260 161476260 C G FCGR2A Silent p.L81L 0.16 TCGA-CV-6961-01 1 162470803 162470803 C T UHMK1 Missense_Mutation p.S221L 0.13 deleterious(0.05) benign(0.009) TCGA-CV-6961-01 1 17749292 17749292 C G RCC2 Missense_Mutation p.K188N 0.26 tolerated(0.1) benign(0.435) TCGA-CV-6961-01 1 178491564 178491564 G A TEX35 Missense_Mutation p.E231K 0.36 tolerated_low_confidence(0.12) benign(0.012) TCGA-CV-6961-01 1 182853912 182853912 C T DHX9 Missense_Mutation p.S1142L 0.31 tolerated(0.07) benign(0.004) TCGA-CV-6961-01 1 186370311 186370311 G C OCLM Nonstop_Mutation p.*45Sext*4 0.23 TCGA-CV-6961-01 1 18703351 18703351 G A IGSF21 Missense_Mutation p.D387N 0.28 tolerated(0.21) probably_damaging(0.999) TCGA-CV-6961-01 1 193150249 193150249 C T B3GALT2 Silent p.E148E 0.30 TCGA-CV-6961-01 1 19597298 19597298 C T AKR7L Silent p.L3L 0.24 TCGA-CV-6961-01 1 202725518 202725518 C G KDM5B Missense_Mutation p.D442H 0.30 deleterious(0.01) possibly_damaging(0.77) TCGA-CV-6961-01 1 205138659 205138659 T C DSTYK Missense_Mutation p.N319S 0.15 tolerated(0.38) benign(0.002) TCGA-CV-6961-01 1 205779420 205779420 C G SLC41A1 Silent p.V50V 0.09 TCGA-CV-6961-01 1 210334211 210334211 G A SYT14 Missense_Mutation p.D562N 0.18 deleterious(0) probably_damaging(0.913) TCGA-CV-6961-01 1 210334216 210334216 G A SYT14 Silent p.V563V 0.18 TCGA-CV-6961-01 1 2121124 2121124 C G C1orf86 3'UTR 0.19 TCGA-CV-6961-01 1 216850530 216850530 G A ESRRG Silent p.L125L 0.19 TCGA-CV-6961-01 1 219384873 219384873 C T LYPLAL1 Nonsense_Mutation p.Q173* 0.22 TCGA-CV-6961-01 1 232941206 232941206 C G MAP10 Missense_Mutation p.S146W 0.32 deleterious(0.01) benign(0.3) TCGA-CV-6961-01 1 235345584 235345584 C A ARID4B Nonsense_Mutation p.E884* 0.06 TCGA-CV-6961-01 1 242162283 242162283 C T MAP1LC3C Missense_Mutation p.V10I 0.24 tolerated(0.2) benign(0.004) TCGA-CV-6961-01 1 2428128 2428128 G A PLCH2 Missense_Mutation p.D613N 0.20 deleterious(0.01) probably_damaging(0.913) TCGA-CV-6961-01 1 247694956 247694956 C G OR2C3 Silent p.L286L 0.06 TCGA-CV-6961-01 1 248059216 248059216 G C OR2W3 Missense_Mutation p.V110L 0.28 deleterious(0) benign(0.103) TCGA-CV-6961-01 1 27876393 27876393 C T AHDC1 Missense_Mutation p.R745Q 0.18 deleterious(0.03) benign(0.417) TCGA-CV-6961-01 1 36521367 36521367 G C AGO3 3'UTR 0.25 TCGA-CV-6961-01 1 36883811 36883811 C G OSCP1 Missense_Mutation p.E357Q 0.16 tolerated(0.18) benign(0.012) TCGA-CV-6961-01 1 3756183 3756183 C G CEP104 Missense_Mutation p.D242H 0.12 deleterious(0) probably_damaging(0.992) TCGA-CV-6961-01 1 3782217 3782217 C T DFFB Intron 0.20 TCGA-CV-6961-01 1 42880305 42880305 G C RIMKLA Missense_Mutation p.G279A 0.08 deleterious(0.03) probably_damaging(0.977) TCGA-CV-6961-01 1 43394969 43394969 G C SLC2A1 Missense_Mutation p.T295R 0.44 deleterious(0.02) possibly_damaging(0.546) TCGA-CV-6961-01 1 43812513 43812513 C G MPL Missense_Mutation p.L406V 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 1 43907767 43907767 G A SZT2 Silent p.R2556R 0.08 TCGA-CV-6961-01 1 45120816 45120816 G T TMEM53 Silent p.I83I 0.17 TCGA-CV-6961-01 1 45295679 45295679 C G PTCH2 Silent p.L279L 0.18 TCGA-CV-6961-01 1 46745255 46745255 C T LRRC41 Silent p.E684E 0.25 TCGA-CV-6961-01 1 47046281 47046281 G A MKNK1 Missense_Mutation p.S52F 0.36 deleterious(0.02) possibly_damaging(0.863) TCGA-CV-6961-01 1 52246990 52246990 G A OSBPL9 Missense_Mutation p.D481N 0.37 tolerated(0.42) benign(0.19) TCGA-CV-6961-01 1 55081832 55081832 G T FAM151A Silent p.V92V 0.30 TCGA-CV-6961-01 1 72748198 72748198 C G NEGR1 5'UTR 0.10 TCGA-CV-6961-01 1 94337703 94337703 C T DNTTIP2 Silent p.L664L 0.31 TCGA-CV-6961-01 20 18724748 18724748 C G DTD1 Nonsense_Mutation p.S161* 0.38 TCGA-CV-6961-01 20 2560666 2560666 T A TMC2 Silent p.L266L 0.08 TCGA-CV-6961-01 20 26084205 26084205 C G NCOR1P1 RNA 0.26 TCGA-CV-6961-01 20 3180644 3180644 C T DDRGK1 Intron 0.29 TCGA-CV-6961-01 20 3299010 3299010 C A C20orf194 Missense_Mutation p.G465V 0.31 tolerated(0.21) possibly_damaging(0.784) TCGA-CV-6961-01 20 33567491 33567491 C T MYH7B Nonsense_Mutation p.Q118* 0.23 TCGA-CV-6961-01 20 34041810 34041810 C G GDF5 Intron 0.21 TCGA-CV-6961-01 20 34054793 34054793 C T CEP250 Silent p.F165F 0.29 TCGA-CV-6961-01 20 34054830 34054830 C T CEP250 Missense_Mutation p.L178F 0.26 probably_damaging(1) TCGA-CV-6961-01 20 34054880 34054880 G C CEP250 Missense_Mutation p.M194I 0.27 probably_damaging(0.995) TCGA-CV-6961-01 20 34206846 34206846 G C SPAG4 Missense_Mutation p.R240T 0.19 tolerated(0.05) benign(0.057) TCGA-CV-6961-01 20 34292397 34292397 C G RBM39 3'UTR 0.21 TCGA-CV-6961-01 20 35155390 35155390 G C DLGAP4 Missense_Mutation p.D976H 0.16 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 20 36572481 36572481 C T VSTM2L Silent p.F147F 0.27 TCGA-CV-6961-01 20 428599 428599 C A TBC1D20 Nonsense_Mutation p.E64* 0.22 TCGA-CV-6961-01 20 43964468 43964468 G A SDC4 Silent p.P51P 0.40 TCGA-CV-6961-01 20 4705248 4705248 C G PRND Silent p.L17L 0.25 TCGA-CV-6961-01 20 50140540 50140540 G A NFATC2 Silent p.G80G 0.21 TCGA-CV-6961-01 20 60706468 60706468 G A LSM14B Missense_Mutation p.E298K 0.19 deleterious(0.01) benign(0.419) TCGA-CV-6961-01 20 60775858 60775858 G C MTG2 Missense_Mutation p.E316Q 0.23 tolerated(0.09) benign(0.395) TCGA-CV-6961-01 20 62298846 62298846 G C RTEL1 Silent p.R237R 0.29 TCGA-CV-6961-01 20 62904683 62904683 G C PCMTD2 Missense_Mutation p.K272N 0.22 deleterious(0.02) possibly_damaging(0.548) TCGA-CV-6961-01 21 31709486 31709486 G A KRTAP27-1 Silent p.N167N 0.28 TCGA-CV-6961-01 21 33031995 33031995 G A SOD1 5'UTR 0.33 TCGA-CV-6961-01 21 36171624 36171624 G A RUNX1 Missense_Mutation p.S314F 0.05 deleterious(0.01) benign(0.377) TCGA-CV-6961-01 21 36171681 36171681 G A RUNX1 Missense_Mutation p.S295F 0.08 deleterious(0.01) possibly_damaging(0.739) TCGA-CV-6961-01 21 37431212 37431212 G C SETD4 5'UTR 0.26 TCGA-CV-6961-01 21 40191453 40191453 G A ETS2 Missense_Mutation p.E280K 0.58 tolerated(0.1) benign(0.001) TCGA-CV-6961-01 21 40194646 40194646 G A ETS2 Missense_Mutation p.E415K 0.56 deleterious(0.04) probably_damaging(0.982) TCGA-CV-6961-01 21 40194812 40194812 G T ETS2 Nonstop_Mutation p.*470Lext*66 0.73 TCGA-CV-6961-01 21 40549373 40549373 C G PSMG1 Missense_Mutation p.K260N 0.27 tolerated(0.05) possibly_damaging(0.679) TCGA-CV-6961-01 21 42694889 42694889 G T FAM3B Missense_Mutation p.C20F 0.16 deleterious(0.03) benign(0.077) TCGA-CV-6961-01 21 43938510 43938510 C T SLC37A1 5'UTR 0.32 TCGA-CV-6961-01 21 45104516 45104516 C G RRP1B Missense_Mutation p.S325C 0.08 tolerated(0.18) benign(0.009) TCGA-CV-6961-01 21 45959218 45959218 G A KRTAP10-1 Silent p.L272L 0.35 TCGA-CV-6961-01 21 45959660 45959660 G C KRTAP10-1 Missense_Mutation p.S125C 0.21 deleterious(0.02) unknown(0) TCGA-CV-6961-01 21 45959828 45959828 G A KRTAP10-1 Missense_Mutation p.S69L 0.19 deleterious(0.04) unknown(0) TCGA-CV-6961-01 21 45960077 45960077 G T KRTAP10-1 5'UTR 0.25 TCGA-CV-6961-01 21 45994519 45994519 C G KRTAP10-4 Missense_Mutation p.S295C 0.06 deleterious(0.03) unknown(0) TCGA-CV-6961-01 21 47773920 47773920 G A PCNT Missense_Mutation p.E567K 0.17 probably_damaging(0.914) TCGA-CV-6961-01 22 17288751 17288751 G A XKR3 Silent p.I71I 0.26 TCGA-CV-6961-01 22 17956654 17956654 G C CECR2 Missense_Mutation p.D10H 0.28 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 22 18072904 18072904 G A SLC25A18 Missense_Mutation p.A284T 0.18 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 22 18220787 18220787 C T BID Missense_Mutation p.R237K 0.25 deleterious(0.01) possibly_damaging(0.753) TCGA-CV-6961-01 22 18604368 18604368 G C TUBA8 Missense_Mutation p.K42N 0.16 tolerated_low_confidence(0.51) benign(0) TCGA-CV-6961-01 22 18604405 18604405 G A TUBA8 Missense_Mutation p.E55K 0.12 deleterious_low_confidence(0) benign(0.088) TCGA-CV-6961-01 22 19207486 19207486 C T CLTCL1 Missense_Mutation p.E943K 0.22 deleterious(0.01) possibly_damaging(0.531) TCGA-CV-6961-01 22 21107310 21107310 C T PI4KA Silent p.K956K 0.37 TCGA-CV-6961-01 22 24086061 24086061 G A ZNF70 Silent p.L423L 0.33 TCGA-CV-6961-01 22 24086776 24086776 G C ZNF70 Silent p.L184L 0.20 TCGA-CV-6961-01 22 24911253 24911253 C T UPB1 Missense_Mutation p.R236W 0.30 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 22 29445929 29445929 G A ZNRF3 Missense_Mutation p.R587H 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-CV-6961-01 22 31484020 31484020 G A SMTN Missense_Mutation p.E41K 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-6961-01 22 32587230 32587230 C T RFPL2 Silent p.E222E 0.07 TCGA-CV-6961-01 22 36691644 36691644 T A MYH9 Missense_Mutation p.E1131V 0.25 probably_damaging(0.958) TCGA-CV-6961-01 22 36691645 36691645 C T MYH9 Missense_Mutation p.E1131K 0.25 probably_damaging(0.955) TCGA-CV-6961-01 22 39530549 39530549 G C CBX7 Missense_Mutation p.S152W 0.23 deleterious(0) probably_damaging(0.925) TCGA-CV-6961-01 22 40745953 40745953 C G ADSL Missense_Mutation p.H91D 0.05 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 22 41738568 41738568 C T ZC3H7B Silent p.I411I 0.07 TCGA-CV-6961-01 22 43272287 43272287 C G PACSIN2 Missense_Mutation p.E402Q 0.21 tolerated(0.06) possibly_damaging(0.709) TCGA-CV-6961-01 22 44681333 44681333 T A KIAA1644 Missense_Mutation p.M192L 0.22 tolerated_low_confidence(0.24) benign(0) TCGA-CV-6961-01 22 44681334 44681334 C T KIAA1644 Silent p.L191L 0.22 TCGA-CV-6961-01 22 44681481 44681481 C T KIAA1644 Missense_Mutation p.M142I 0.27 tolerated(0.07) benign(0.015) TCGA-CV-6961-01 22 46657831 46657831 G A PKDREJ Silent p.I463I 0.08 TCGA-CV-6961-01 22 46704811 46704811 G A GTSE1 Missense_Mutation p.G245R 0.20 deleterious(0) probably_damaging(0.976) TCGA-CV-6961-01 22 50654234 50654234 G A SELO Silent p.L480L 0.31 TCGA-CV-6961-01 22 50845240 50845240 A G PPP6R2 Missense_Mutation p.N117S 0.25 deleterious(0.02) probably_damaging(0.953) TCGA-CV-6961-01 2 10132193 10132193 C G GRHL1 Missense_Mutation p.F460L 0.13 tolerated(0.36) probably_damaging(0.986) TCGA-CV-6961-01 2 113258824 113258824 G C TTL Missense_Mutation p.D171H 0.16 deleterious(0.01) possibly_damaging(0.8) TCGA-CV-6961-01 2 113258890 113258890 G C TTL Missense_Mutation p.E193Q 0.19 tolerated(0.16) benign(0.063) TCGA-CV-6961-01 2 11774361 11774361 G T GREB1 Missense_Mutation p.W1699L 0.20 deleterious(0) possibly_damaging(0.76) TCGA-CV-6961-01 2 122165228 122165228 C T CLASP1 Missense_Mutation p.D830N 0.24 deleterious(0) probably_damaging(0.938) TCGA-CV-6961-01 2 128415128 128415128 G A LIMS2 Missense_Mutation p.S31L 0.27 tolerated(0.17) benign(0.327) TCGA-CV-6961-01 2 136399347 136399347 C T R3HDM1 Silent p.I487I 0.24 TCGA-CV-6961-01 2 152381070 152381070 C G NEB Missense_Mutation p.D7445H 0.25 probably_damaging(0.996) TCGA-CV-6961-01 2 155555807 155555807 G A KCNJ3 Missense_Mutation p.A174T 0.20 deleterious(0) probably_damaging(0.998) TCGA-CV-6961-01 2 160087378 160087378 C T TANC1 Missense_Mutation p.S1814F 0.17 tolerated_low_confidence(0.64) benign(0) TCGA-CV-6961-01 2 166210745 166210745 C T SCN2A Missense_Mutation p.S988F 0.20 deleterious(0) possibly_damaging(0.908) TCGA-CV-6961-01 2 166900256 166900256 C A SCN1A Nonsense_Mutation p.G656* 0.07 TCGA-CV-6961-01 2 169684718 169684718 C T NOSTRIN Missense_Mutation p.A83V 0.22 deleterious(0) probably_damaging(0.983) TCGA-CV-6961-01 2 176995585 176995585 C T HOXD8 Missense_Mutation p.S164L 0.17 tolerated(0.26) probably_damaging(0.997) TCGA-CV-6961-01 2 17699613 17699613 C T RAD51AP2 Missense_Mutation p.E24K 0.26 deleterious(0.03) possibly_damaging(0.52) TCGA-CV-6961-01 2 179398942 179398942 C T TTN Missense_Mutation p.E34134K 0.25 TCGA-CV-6961-01 2 179498729 179498729 G A TTN Missense_Mutation p.S14166F 0.30 TCGA-CV-6961-01 2 182763789 182763789 G A SSFA2 Silent p.G151G 0.15 TCGA-CV-6961-01 2 190626240 190626240 C G OSGEPL1 Missense_Mutation p.E43Q 0.11 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 2 191235867 191235867 C G INPP1 Missense_Mutation p.F313L 0.23 deleterious(0.01) possibly_damaging(0.707) TCGA-CV-6961-01 2 191895766 191895766 G A STAT4 Missense_Mutation p.L718F 0.19 tolerated(0.18) benign(0.11) TCGA-CV-6961-01 2 200173562 200173562 A G SATB2 Missense_Mutation p.V554A 0.21 tolerated(1) benign(0.002) TCGA-CV-6961-01 2 20130163 20130163 T A WDR35 Nonsense_Mutation p.K1050* 0.13 TCGA-CV-6961-01 2 20130164 20130164 C T WDR35 Silent p.L1049L 0.13 TCGA-CV-6961-01 2 20130165 20130165 A G WDR35 Missense_Mutation p.L1049P 0.13 deleterious(0) possibly_damaging(0.665) TCGA-CV-6961-01 2 203130661 203130661 C T NOP58 5'UTR 0.17 TCGA-CV-6961-01 2 203395617 203395617 G A BMPR2 Missense_Mutation p.M356I 0.30 tolerated(0.07) possibly_damaging(0.906) TCGA-CV-6961-01 2 206166459 206166459 C T PARD3B Intron 0.28 TCGA-CV-6961-01 2 207041250 207041250 G C GPR1 Missense_Mutation p.S241C 0.13 tolerated(0.05) possibly_damaging(0.907) TCGA-CV-6961-01 2 21238409 21238409 G A APOB Missense_Mutation p.T1114I 0.15 benign(0.08) TCGA-CV-6961-01 2 216177099 216177099 G A ATIC Intron 0.23 TCGA-CV-6961-01 2 219000410 219000410 C T CXCR2 Silent p.L296L 0.31 TCGA-CV-6961-01 2 219695504 219695504 G A PRKAG3 Missense_Mutation p.S65L 0.33 deleterious_low_confidence(0.01) benign(0) TCGA-CV-6961-01 2 220099962 220099962 A T ANKZF1 Missense_Mutation p.H540L 0.31 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 2 220101166 220101166 G A ANKZF1 Silent p.%3D 0.25 TCGA-CV-6961-01 2 220101255 220101255 G C ANKZF1 3'UTR 0.22 TCGA-CV-6961-01 2 220412742 220412742 C T TMEM198 Silent p.L227L 0.20 TCGA-CV-6961-01 2 223559247 223559247 G C MOGAT1 Missense_Mutation p.L215F 0.33 deleterious(0.01) probably_damaging(1) TCGA-CV-6961-01 2 230902183 230902183 C G SLC16A14 Missense_Mutation p.M482I 0.15 tolerated(0.13) benign(0.009) TCGA-CV-6961-01 2 231988494 231988494 G A HTR2B 5'UTR 0.12 TCGA-CV-6961-01 2 233001212 233001212 C G DIS3L2 Missense_Mutation p.R245G 0.20 deleterious(0) probably_damaging(0.989) TCGA-CV-6961-01 2 233321905 233321905 C T ALPI Missense_Mutation p.S174L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 2 234091127 234091127 C A INPP5D Missense_Mutation p.Q703K 0.21 deleterious(0.01) possibly_damaging(0.897) TCGA-CV-6961-01 2 27463930 27463930 G A CAD Silent p.L1881L 0.30 TCGA-CV-6961-01 2 47601169 47601169 C G EPCAM Missense_Mutation p.S136C 0.16 deleterious(0.01) possibly_damaging(0.711) TCGA-CV-6961-01 2 55460509 55460509 C G RPS27A Missense_Mutation p.S20W 0.11 deleterious(0) probably_damaging(0.959) TCGA-CV-6961-01 2 66664813 66664813 C G MEIS1 Intron 0.40 TCGA-CV-6961-01 2 69704114 69704114 C T AAK1 Missense_Mutation p.D897N 0.21 deleterious(0.05) probably_damaging(0.977) TCGA-CV-6961-01 2 70900406 70900406 G A ADD2 Intron 0.20 TCGA-CV-6961-01 2 74074516 74074516 G C STAMBP Missense_Mutation p.K126N 0.21 tolerated(0.69) benign(0.16) TCGA-CV-6961-01 2 74690021 74690021 C T MOGS Missense_Mutation p.G299S 0.27 deleterious(0.05) probably_damaging(0.915) TCGA-CV-6961-01 2 85628366 85628366 C T CAPG Silent p.K146K 0.27 TCGA-CV-6961-01 2 85628369 85628369 C A CAPG Missense_Mutation p.K145N 0.28 tolerated(0.06) possibly_damaging(0.897) TCGA-CV-6961-01 2 89416899 89416899 G A IGKV1-17 Silent p.L95L 0.06 TCGA-CV-6961-01 3 101572517 101572517 G A NFKBIZ Missense_Mutation p.E383K 0.15 tolerated(0.16) benign(0.017) TCGA-CV-6961-01 3 112358405 112358405 C T CCDC80 Silent p.E116E 0.21 TCGA-CV-6961-01 3 113753906 113753906 C G KIAA1407 Missense_Mutation p.Q228H 0.14 deleterious(0.02) benign(0.132) TCGA-CV-6961-01 3 120499990 120499990 G C GTF2E1 Missense_Mutation p.K331N 0.12 deleterious(0) possibly_damaging(0.776) TCGA-CV-6961-01 3 122170899 122170899 G C KPNA1 Missense_Mutation p.L193V 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6961-01 3 125879726 125879726 G C ALDH1L1 Missense_Mutation p.P43A 0.11 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-CV-6961-01 3 127327234 127327234 C T MCM2 Nonsense_Mutation p.Q371* 0.23 TCGA-CV-6961-01 3 133109176 133109176 G A TMEM108 Missense_Mutation p.E535K 0.16 deleterious(0) benign(0.131) TCGA-CV-6961-01 3 142443489 142443489 G A TRPC1 Missense_Mutation p.E30K 0.15 tolerated(0.88) benign(0) TCGA-CV-6961-01 3 150321201 150321201 G C SELT Missense_Mutation p.E18Q 0.19 tolerated(0.4) benign(0.003) TCGA-CV-6961-01 3 15467880 15467880 G C METTL6 Missense_Mutation p.L47V 0.24 deleterious(0.02) benign(0.036) TCGA-CV-6961-01 3 155200497 155200497 C T PLCH1 Silent p.E1114E 0.19 TCGA-CV-6961-01 3 157188282 157188282 C T VEPH1 Missense_Mutation p.E59K 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-CV-6961-01 3 157920866 157920866 G A RSRC1 Missense_Mutation p.R109K 0.08 tolerated_low_confidence(0.09) unknown(0) TCGA-CV-6961-01 3 160137327 160137327 G T SMC4 Missense_Mutation p.R618I 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6961-01 3 169802027 169802027 C T GPR160 Silent p.F89F 0.09 TCGA-CV-6961-01 3 179306692 179306692 G C MRPL47 Missense_Mutation p.L241V 0.07 tolerated(0.17) benign(0.056) TCGA-CV-6961-01 3 180685868 180685868 G A FXR1 Missense_Mutation p.E410K 0.12 deleterious(0) probably_damaging(0.944) TCGA-CV-6961-01 3 182897459 182897459 C G MCF2L2 Missense_Mutation p.D1043H 0.09 deleterious(0.01) possibly_damaging(0.541) TCGA-CV-6961-01 3 183900581 183900581 C T AP2M1 Silent p.I366I 0.15 TCGA-CV-6961-01 3 186338532 186338532 G C AHSG Missense_Mutation p.G306A 0.37 tolerated(0.87) benign(0.002) TCGA-CV-6961-01 3 186395631 186395631 C T HRG Missense_Mutation p.P513S 0.27 tolerated(0.67) benign(0.004) TCGA-CV-6961-01 3 189681803 189681803 C T LEPREL1 Missense_Mutation p.G660R 0.15 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 3 193185208 193185208 C G ATP13A4 Missense_Mutation p.Q337H 0.11 tolerated(1) benign(0.015) TCGA-CV-6961-01 3 193272589 193272589 G A ATP13A4 5'UTR 0.08 TCGA-CV-6961-01 3 194152469 194152469 G A ATP13A3 Missense_Mutation p.H800Y 0.16 tolerated(0.49) benign(0.002) TCGA-CV-6961-01 3 194309351 194309351 C G TMEM44 Silent p.V445V 0.04 TCGA-CV-6961-01 3 195498520 195498520 C T MUC4 Intron 0.25 TCGA-CV-6961-01 3 195515905 195515905 G A MUC4 Missense_Mutation p.S849F 0.11 unknown(0) TCGA-CV-6961-01 3 195595101 195595101 C G TNK2 Missense_Mutation p.E753Q 0.11 tolerated_low_confidence(0.09) possibly_damaging(0.828) TCGA-CV-6961-01 3 195595308 195595308 G C TNK2 Missense_Mutation p.Q684E 0.31 tolerated_low_confidence(0.07) benign(0.007) TCGA-CV-6961-01 3 195698269 195698269 G C SDHAP1 RNA 0.09 TCGA-CV-6961-01 3 196386869 196386869 G A NRROS Missense_Mutation p.E119K 0.12 tolerated(0.82) benign(0.005) TCGA-CV-6961-01 3 196792287 196792287 C T DLG1 Missense_Mutation p.D778N 0.05 tolerated(0.06) probably_damaging(0.989) TCGA-CV-6961-01 3 197427616 197427616 C G KIAA0226 Missense_Mutation p.E377Q 0.30 tolerated(0.81) benign(0.001) TCGA-CV-6961-01 3 197616387 197616387 C G IQCG 3'UTR 0.14 TCGA-CV-6961-01 3 19924047 19924047 C G EFHB Missense_Mutation p.E775Q 0.23 tolerated(0.19) benign(0.022) TCGA-CV-6961-01 3 30691947 30691947 C G TGFBR2 Nonsense_Mutation p.S175* 0.27 TCGA-CV-6961-01 3 36897603 36897603 C G TRANK1 Missense_Mutation p.E1160Q 0.06 deleterious(0) probably_damaging(0.993) TCGA-CV-6961-01 3 39228635 39228635 C T XIRP1 Missense_Mutation p.E768K 0.28 deleterious(0.05) benign(0.023) TCGA-CV-6961-01 3 42680839 42680839 G C NKTR Missense_Mutation p.E1215Q 0.32 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-CV-6961-01 3 42680982 42680982 G C NKTR Missense_Mutation p.L1262F 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-6961-01 3 48789027 48789027 G A PRKAR2A Silent p.L402L 0.48 TCGA-CV-6961-01 3 49702266 49702266 C T BSN Silent p.F3925F 0.30 TCGA-CV-6961-01 3 52382931 52382931 G A DNAH1 Missense_Mutation p.G712S 0.07 benign(0.011) TCGA-CV-6961-01 3 57557894 57557894 G A ARF4 3'UTR 0.37 TCGA-CV-6961-01 3 9517533 9517533 C T SETD5 Nonsense_Mutation p.Q1363* 0.45 TCGA-CV-6961-01 3 95374262 95374262 C T MTHFD2P1 RNA 0.08 TCGA-CV-6961-01 3 97887885 97887885 C G OR5H15 Silent p.L114L 0.21 TCGA-CV-6961-01 3 98518364 98518364 G A DCBLD2 Missense_Mutation p.S727L 0.23 deleterious(0.01) possibly_damaging(0.459) TCGA-CV-6961-01 3 99649833 99649833 G A FILIP1L Missense_Mutation p.S11L 0.17 tolerated(0.3) benign(0.001) TCGA-CV-6961-01 3 9979762 9979762 C T CRELD1 Silent p.P144P 0.19 TCGA-CV-6961-01 3 99881149 99881149 G A CMSS1 Silent p.K76K 0.11 TCGA-CV-6961-01 4 108578142 108578142 C T PAPSS1 Missense_Mutation p.V269I 0.12 tolerated(0.05) benign(0.362) TCGA-CV-6961-01 4 113435801 113435801 G T NEUROG2 3'UTR 0.28 TCGA-CV-6961-01 4 151773393 151773393 G A LRBA Nonsense_Mutation p.Q1157* 0.24 TCGA-CV-6961-01 4 153692046 153692046 C G TIGD4 Missense_Mutation p.K37N 0.34 tolerated(0.28) possibly_damaging(0.88) TCGA-CV-6961-01 4 153692254 153692254 C T TIGD4 5'UTR 0.33 TCGA-CV-6961-01 4 155278412 155278412 C G DCHS2 Missense_Mutation p.M253I 0.22 tolerated(0.4) benign(0) TCGA-CV-6961-01 4 158224904 158224904 C A GRIA2 Missense_Mutation p.Q144K 0.23 tolerated(1) benign(0) TCGA-CV-6961-01 4 159791564 159791564 C T FNIP2 Silent p.T964T 0.34 TCGA-CV-6961-01 4 159836377 159836377 G A C4orf45 Missense_Mutation p.S164L 0.35 tolerated(0.18) unknown(0) TCGA-CV-6961-01 4 170523167 170523167 G A NEK1 Missense_Mutation p.S69L 0.14 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 4 39448239 39448239 G A KLB Silent p.L631L 0.33 TCGA-CV-6961-01 4 40752778 40752778 C A NSUN7 Missense_Mutation p.T23N 0.29 tolerated_low_confidence(0.08) benign(0.055) TCGA-CV-6961-01 4 40752873 40752873 C G NSUN7 Missense_Mutation p.Q55E 0.29 deleterious(0) benign(0.156) TCGA-CV-6961-01 4 42403477 42403477 G T SHISA3 3'UTR 0.20 TCGA-CV-6961-01 4 52861814 52861814 G C LRRC66 Missense_Mutation p.F458L 0.25 tolerated(0.42) benign(0.011) TCGA-CV-6961-01 4 71068032 71068032 G A ODAM Missense_Mutation p.E212K 0.26 deleterious(0) benign(0.047) TCGA-CV-6961-01 4 71508386 71508409 ACTACTGTTGCCCCACTGGGTCCC - ENAM In_Frame_Del p.T415_P422del 0.23 TCGA-CV-6961-01 4 71508617 71508617 G A ENAM Missense_Mutation p.E492K 0.20 deleterious(0.02) possibly_damaging(0.523) TCGA-CV-6961-01 4 71660553 71660553 G A RUFY3 Missense_Mutation p.R500K 0.06 tolerated(0.09) benign(0.001) TCGA-CV-6961-01 4 71660554 71660554 A T RUFY3 Missense_Mutation p.R500S 0.06 tolerated(0.06) benign(0.054) TCGA-CV-6961-01 4 73280574 73280574 C G ADAMTS3 Missense_Mutation p.E207Q 0.28 tolerated(0.65) benign(0.001) TCGA-CV-6961-01 4 73957704 73957704 G A ANKRD17 Missense_Mutation p.L1881F 0.14 possibly_damaging(0.53) TCGA-CV-6961-01 4 74361120 74361120 G A AFM Missense_Mutation p.E388K 0.25 tolerated(0.05) benign(0.21) TCGA-CV-6961-01 4 78079754 78079754 C G CCNG2 Silent p.V23V 0.24 TCGA-CV-6961-01 4 79455676 79455676 C T FRAS1 Nonsense_Mutation p.Q3667* 0.20 TCGA-CV-6961-01 4 83858440 83858440 G A LIN54 Missense_Mutation p.S515L 0.19 deleterious(0.04) benign(0.008) TCGA-CV-6961-01 4 83859644 83859644 G A LIN54 Missense_Mutation p.S485L 0.07 tolerated(0.12) benign(0.002) TCGA-CV-6961-01 4 85672736 85672736 G C WDFY3 Missense_Mutation p.A1958G 0.29 deleterious(0) benign(0.298) TCGA-CV-6961-01 5 112851047 112851047 C T YTHDC2 Missense_Mutation p.S89F 0.18 deleterious(0) probably_damaging(0.996) TCGA-CV-6961-01 5 112868689 112868689 G C YTHDC2 Missense_Mutation p.E263D 0.25 deleterious(0.01) possibly_damaging(0.707) TCGA-CV-6961-01 5 112871369 112871369 G A YTHDC2 Missense_Mutation p.D326N 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-CV-6961-01 5 112889016 112889016 C T YTHDC2 Silent p.I609I 0.32 TCGA-CV-6961-01 5 115151922 115151922 C G CDO1 Intron 0.18 TCGA-CV-6961-01 5 121488078 121488078 G C ZNF474 Missense_Mutation p.L131F 0.28 deleterious(0.01) possibly_damaging(0.793) TCGA-CV-6961-01 5 123984351 123984351 G A ZNF608 Missense_Mutation p.H576Y 0.25 deleterious(0) probably_damaging(0.993) TCGA-CV-6961-01 5 127599217 127599217 C G FBN2 Missense_Mutation p.E2698Q 0.25 deleterious(0.01) benign(0.065) TCGA-CV-6961-01 5 131671648 131671648 G T SLC22A4 Missense_Mutation p.A467S 0.10 tolerated(0.06) benign(0.034) TCGA-CV-6961-01 5 131825145 131825145 C T IRF1 Missense_Mutation p.R9K 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CV-6961-01 5 137045500 137045500 C T KLHL3 Silent p.E60E 0.21 TCGA-CV-6961-01 5 139745591 139745591 G A SLC4A9 Missense_Mutation p.R652H 0.27 tolerated(0.06) benign(0.053) TCGA-CV-6961-01 5 140475302 140475302 G C PCDHB2 Missense_Mutation p.D310H 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CV-6961-01 5 140530308 140530308 A T PCDHB6 Missense_Mutation p.H157L 0.21 tolerated(0.11) benign(0) TCGA-CV-6961-01 5 140625408 140625408 G A PCDHB15 Missense_Mutation p.E88K 0.07 deleterious_low_confidence(0.03) benign(0.443) TCGA-CV-6961-01 5 141385711 141385711 C G GNPDA1 Missense_Mutation p.G136A 0.22 tolerated(0.09) possibly_damaging(0.831) TCGA-CV-6961-01 5 145651095 145651095 C G RBM27 Missense_Mutation p.S949C 0.24 tolerated(0.05) benign(0.002) TCGA-CV-6961-01 5 149576346 149576346 C G SLC6A7 Silent p.L95L 0.25 TCGA-CV-6961-01 5 153760021 153760021 G A GALNT10 Silent p.R256R 0.25 TCGA-CV-6961-01 5 158585719 158585719 G A RNF145 Missense_Mutation p.H681Y 0.17 tolerated_low_confidence(1) benign(0.026) TCGA-CV-6961-01 5 176562391 176562391 C G NSD1 Missense_Mutation p.S96C 0.18 tolerated_low_confidence(0.08) probably_damaging(0.993) TCGA-CV-6961-01 5 178358777 178358777 G C ZFP2 Missense_Mutation p.E155Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 5 178507032 178507032 C T ZNF354C Silent p.F533F 0.22 TCGA-CV-6961-01 5 180429669 180429669 C G BTNL3 Intron 0.20 TCGA-CV-6961-01 5 180661922 180661922 C G TRIM41 3'UTR 0.05 TCGA-CV-6961-01 5 24511615 24511615 G C CDH10 Missense_Mutation p.H275D 0.20 deleterious(0.03) benign(0.15) TCGA-CV-6961-01 5 36686317 36686317 G A SLC1A3 Silent p.L525L 0.13 TCGA-CV-6961-01 5 37307413 37307413 C G NUP155 Missense_Mutation p.Q963H 0.15 tolerated(0.08) benign(0.302) TCGA-CV-6961-01 5 38481936 38481936 C G LIFR Missense_Mutation p.E1019Q 0.16 tolerated(0.11) possibly_damaging(0.488) TCGA-CV-6961-01 5 41057214 41057214 G C MROH2B Missense_Mutation p.L306V 0.17 deleterious(0) probably_damaging(0.983) TCGA-CV-6961-01 5 434023 434023 C T AHRR Missense_Mutation p.R412W 0.11 tolerated(0.06) benign(0.02) TCGA-CV-6961-01 5 50118221 50118221 G A PARP8 Missense_Mutation p.R616K 0.15 tolerated(0.05) benign(0.08) TCGA-CV-6961-01 5 5306808 5306808 G A ADAMTS16 Silent p.S1126S 0.11 TCGA-CV-6961-01 5 70786860 70786860 G A BDP1 Silent p.K514K 0.16 TCGA-CV-6961-01 5 71494026 71494026 G C MAP1B Missense_Mutation p.R1615T 0.08 probably_damaging(0.996) TCGA-CV-6961-01 5 79029812 79029812 C T CMYA5 Nonsense_Mutation p.Q1742* 0.19 TCGA-CV-6961-01 5 887482 887482 C T BRD9 Missense_Mutation p.M237I 0.10 deleterious(0.01) benign(0.057) TCGA-CV-6961-01 5 90074289 90074289 C T GPR98 Nonsense_Mutation p.Q4238* 0.24 TCGA-CV-6961-01 5 90670857 90670857 C T ARRDC3 Missense_Mutation p.R251H 0.16 tolerated(0.15) benign(0.032) TCGA-CV-6961-01 6 109285456 109285456 C T ARMC2 Silent p.L742L 0.25 TCGA-CV-6961-01 6 109788881 109788881 G A ZBTB24 Missense_Mutation p.L449F 0.14 deleterious(0) probably_damaging(0.989) TCGA-CV-6961-01 6 116938309 116938309 G A RSPH4A Missense_Mutation p.E175K 0.23 tolerated_low_confidence(0.25) benign(0.035) TCGA-CV-6961-01 6 12122774 12122774 G A HIVEP1 Missense_Mutation p.G916R 0.20 tolerated(0.12) benign(0.046) TCGA-CV-6961-01 6 137243566 137243566 G A SLC35D3 5'UTR 0.29 TCGA-CV-6961-01 6 143091557 143091557 C T HIVEP2 Missense_Mutation p.R1440Q 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-CV-6961-01 6 151646958 151646958 G C AKAP12 Intron 0.29 TCGA-CV-6961-01 6 160484469 160484469 C G IGF2R Missense_Mutation p.D1231E 0.14 tolerated(0.06) probably_damaging(0.997) TCGA-CV-6961-01 6 161134112 161134112 G C PLG Missense_Mutation p.D168H 0.15 deleterious(0) probably_damaging(0.987) TCGA-CV-6961-01 6 16141928 16141928 G T MYLIP Silent p.V117V 0.11 TCGA-CV-6961-01 6 26188960 26188960 T C HIST1H4D 3'UTR 0.30 TCGA-CV-6961-01 6 28251866 28251866 C G PGBD1 Missense_Mutation p.F92L 0.25 deleterious_low_confidence(0.04) probably_damaging(0.928) TCGA-CV-6961-01 6 30297129 30297129 C T TRIM39 Missense_Mutation p.S12F 0.24 tolerated(0.12) unknown(0) TCGA-CV-6961-01 6 30647097 30647097 C G PPP1R18 Missense_Mutation p.E561Q 0.35 tolerated(0.05) possibly_damaging(0.824) TCGA-CV-6961-01 6 3081283 3081283 G C RIPK1 Missense_Mutation p.G131A 0.24 tolerated(0.17) possibly_damaging(0.61) TCGA-CV-6961-01 6 32097143 32097143 C T FKBPL Missense_Mutation p.E139K 0.27 tolerated(0.22) benign(0.145) TCGA-CV-6961-01 6 32097257 32097257 C A FKBPL Missense_Mutation p.D101Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 6 32118683 32118683 C T PRRT1 Missense_Mutation p.G7E 0.27 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-CV-6961-01 6 33555581 33555581 G A GGNBP1 Intron 0.24 TCGA-CV-6961-01 6 33656530 33656530 C G ITPR3 Missense_Mutation p.F2222L 0.20 deleterious(0) probably_damaging(0.913) TCGA-CV-6961-01 6 34839418 34839419 - T UHRF1BP1 Frame_Shift_Ins p.M1347Ifs*10 0.29 TCGA-CV-6961-01 6 35260660 35260660 G T ZNF76 Missense_Mutation p.A390S 0.09 tolerated(0.3) benign(0.082) TCGA-CV-6961-01 6 36285134 36285134 C T C6orf222 Silent p.%3D 0.31 TCGA-CV-6961-01 6 84311158 84311158 C G SNAP91 Splice_Site p.X386_splice 0.11 TCGA-CV-6961-01 6 90402813 90402813 C T MDN1 Silent p.K3312K 0.29 TCGA-CV-6961-01 6 90648025 90648025 C A BACH2 Missense_Mutation p.R627S 0.30 deleterious(0) benign(0.009) TCGA-CV-6961-01 7 102553560 102553560 G C FBXL13 Missense_Mutation p.I327M 0.18 deleterious(0.02) benign(0.285) TCGA-CV-6961-01 7 127236417 127236417 C T FSCN3 Nonsense_Mutation p.R293* 0.34 TCGA-CV-6961-01 7 134849728 134849728 G C TMEM140 Missense_Mutation p.E179Q 0.29 tolerated(0.17) benign(0.168) TCGA-CV-6961-01 7 138603406 138603406 G A KIAA1549 Silent p.Y322Y 0.43 TCGA-CV-6961-01 7 19156446 19156446 C A TWIST1 Nonsense_Mutation p.E167* 0.36 TCGA-CV-6961-01 7 20739704 20739704 G T ABCB5 Silent p.G761G 0.22 TCGA-CV-6961-01 7 21639530 21639530 G A DNAH11 Silent p.L931L 0.42 TCGA-CV-6961-01 7 33060909 33060909 C G NT5C3A Missense_Mutation p.E144Q 0.20 deleterious(0.01) benign(0.077) TCGA-CV-6961-01 7 4213926 4213926 G T SDK1 Missense_Mutation p.A1625S 0.16 tolerated(0.44) benign(0.007) TCGA-CV-6961-01 7 44578910 44578910 C T NPC1L1 Silent p.P362P 0.25 TCGA-CV-6961-01 7 53103789 53103789 C T POM121L12 Missense_Mutation p.A142V 0.29 deleterious(0.02) possibly_damaging(0.873) TCGA-CV-6961-01 7 55224337 55224337 C A EGFR Missense_Mutation p.P373Q 0.19 tolerated(0.58) probably_damaging(0.984) TCGA-CV-6961-01 7 56142396 56142396 G A SUMF2 Missense_Mutation p.E187K 0.06 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 7 5967846 5967846 C T RSPH10B Missense_Mutation p.D805N 0.15 tolerated(0.69) benign(0.004) TCGA-CV-6961-01 7 64168926 64168927 - A ZNF107 Frame_Shift_Ins p.C750Mfs*18 0.23 TCGA-CV-6961-01 7 73520530 73520530 C T LIMK1 Missense_Mutation p.P280S 0.16 tolerated(0.23) possibly_damaging(0.642) TCGA-CV-6961-01 7 73521420 73521420 C G LIMK1 Missense_Mutation p.S321C 0.14 deleterious(0) possibly_damaging(0.841) TCGA-CV-6961-01 7 81662153 81662153 C T CACNA2D1 Missense_Mutation p.R368K 0.36 tolerated(0.14) benign(0.012) TCGA-CV-6961-01 7 87913538 87913538 G A STEAP4 Missense_Mutation p.S16L 0.21 tolerated(0.31) benign(0.003) TCGA-CV-6961-01 7 938885 938885 C T ADAP1 Missense_Mutation p.R294Q 0.16 tolerated(0.54) benign(0.075) TCGA-CV-6961-01 7 98256620 98256620 C G NPTX2 Missense_Mutation p.I344M 0.31 deleterious(0) probably_damaging(0.976) TCGA-CV-6961-01 7 98545957 98545957 G C TRRAP Silent p.L1547L 0.20 TCGA-CV-6961-01 7 99696309 99696309 G A MCM7 Silent p.I204I 0.22 TCGA-CV-6961-01 7 99710524 99710524 C T TAF6 Silent p.Q194Q 0.29 TCGA-CV-6961-01 8 100025989 100025989 T C VPS13B Intron 0.05 TCGA-CV-6961-01 8 100866028 100866028 G A VPS13B Missense_Mutation p.E3496K 0.26 tolerated(0.23) benign(0.292) TCGA-CV-6961-01 8 102504890 102504890 C G GRHL2 5'UTR 0.09 TCGA-CV-6961-01 8 124109599 124109599 G C TBC1D31 Missense_Mutation p.R250T 0.20 deleterious(0) benign(0.342) TCGA-CV-6961-01 8 124138784 124138784 G C TBC1D31 Missense_Mutation p.E581Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-CV-6961-01 8 124810476 124810476 C T FAM91A1 Nonsense_Mutation p.Q520* 0.24 TCGA-CV-6961-01 8 125989717 125989717 C T ZNF572 Nonsense_Mutation p.Q403* 0.14 TCGA-CV-6961-01 8 139164359 139164359 C T FAM135B Missense_Mutation p.D787N 0.11 deleterious(0.04) benign(0.146) TCGA-CV-6961-01 8 139164976 139164976 G C FAM135B Missense_Mutation p.S581C 0.25 tolerated(0.27) benign(0.004) TCGA-CV-6961-01 8 13947783 13947783 G C SGCZ 3'UTR 0.43 TCGA-CV-6961-01 8 143961152 143961152 C G CYP11B1 Silent p.T26T 0.20 TCGA-CV-6961-01 8 143998588 143998588 C T CYP11B2 Silent p.P94P 0.23 TCGA-CV-6961-01 8 144943311 144943311 C T EPPK1 Missense_Mutation p.G1371R 0.18 benign(0.229) TCGA-CV-6961-01 8 144991749 144991749 C T PLEC Silent p.L4217L 0.21 TCGA-CV-6961-01 8 144998102 144998102 C G PLEC Missense_Mutation p.E2136Q 0.12 unknown(0) TCGA-CV-6961-01 8 145007122 145007122 G A PLEC Nonsense_Mutation p.Q663* 0.18 TCGA-CV-6961-01 8 17486079 17486079 C T PDGFRL Missense_Mutation p.R197W 0.27 deleterious(0) probably_damaging(1) TCGA-CV-6961-01 8 22210625 22210625 C T PIWIL2 Nonsense_Mutation p.Q853* 0.32 TCGA-CV-6961-01 8 22494439 22494439 G A BIN3 Nonsense_Mutation p.Q32* 0.17 TCGA-CV-6961-01 8 22886091 22886091 G T TNFRSF10B Silent p.V167V 0.24 TCGA-CV-6961-01 8 35616848 35616848 C G UNC5D Nonsense_Mutation p.S725* 0.23 TCGA-CV-6961-01 8 38162181 38162181 G A WHSC1L1 Silent p.L845L 0.15 TCGA-CV-6961-01 8 42693174 42693174 G A THAP1 Silent p.D191D 0.21 TCGA-CV-6961-01 8 43048965 43048965 G A HGSNAT Silent p.V481V 0.27 TCGA-CV-6961-01 8 95508622 95508622 T C KIAA1429 Silent p.K1439K 0.33 TCGA-CV-6961-01 8 95942725 95942725 C T TP53INP1 Silent p.P235P 0.31 TCGA-CV-6961-01 8 98289207 98289207 C G TSPYL5 Missense_Mutation p.R289T 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6961-01 8 99963753 99963753 C G OSR2 Missense_Mutation p.P255A 0.30 deleterious(0.01) benign(0) TCGA-CV-6961-01 9 100056386 100056386 G A CCDC180 5'UTR 0.29 TCGA-CV-6961-01 9 113169862 113169862 G A SVEP1 Missense_Mutation p.S2673L 0.25 benign(0.297) TCGA-CV-6961-01 9 116083793 116083793 G A WDR31 Silent p.L212L 0.34 TCGA-CV-6961-01 9 116136231 116136231 G C HDHD3 Missense_Mutation p.S135C 0.24 deleterious(0.01) probably_damaging(1) TCGA-CV-6961-01 9 117879 117879 C G FOXD4 Missense_Mutation p.E81Q 0.05 tolerated(0.08) benign(0.034) TCGA-CV-6961-01 9 125438072 125438072 C T OR1L3 Missense_Mutation p.L222F 0.23 tolerated(1) benign(0.116) TCGA-CV-6961-01 9 128086134 128086134 C T GAPVD1 Missense_Mutation p.S597L 0.16 deleterious(0) probably_damaging(0.995) TCGA-CV-6961-01 9 131678554 131678554 C G LRRC8A Silent p.L779L 0.12 TCGA-CV-6961-01 9 133507625 133507625 C A FUBP3 Missense_Mutation p.S490R 0.24 tolerated(0.14) benign(0.066) TCGA-CV-6961-01 9 135982483 135982483 C T RALGDS Missense_Mutation p.E468K 0.16 deleterious(0.02) unknown(0) TCGA-CV-6961-01 9 135985044 135985044 C T RALGDS Missense_Mutation p.E185K 0.22 tolerated(0.07) possibly_damaging(0.793) TCGA-CV-6961-01 9 136596561 136596561 C G SARDH Missense_Mutation p.E186Q 0.09 tolerated(0.18) benign(0.262) TCGA-CV-6961-01 9 139309033 139309033 G C PMPCA Missense_Mutation p.D156H 0.06 tolerated(0.31) benign(0.082) TCGA-CV-6961-01 9 139749723 139749723 G A MAMDC4 Silent p.Q405Q 0.46 TCGA-CV-6961-01 9 139909920 139909920 C T ABCA2 Missense_Mutation p.D1215N 0.23 tolerated(0.08) possibly_damaging(0.485) TCGA-CV-6961-01 9 139910481 139910481 C T ABCA2 Missense_Mutation p.E1084K 0.38 deleterious(0) probably_damaging(0.993) TCGA-CV-6961-01 9 139910547 139910547 C T ABCA2 Missense_Mutation p.E1062K 0.34 tolerated(0.6) benign(0.011) TCGA-CV-6961-01 9 139913234 139913234 C T ABCA2 Missense_Mutation p.E586K 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-6961-01 9 32542604 32542604 C T TOPORS Missense_Mutation p.R640K 0.25 tolerated_low_confidence(1) unknown(0) TCGA-CV-6961-01 9 33796723 33796723 G A PRSS3 Silent p.L98L 0.06 TCGA-CV-6961-01 9 35737182 35737182 T A GBA2 Missense_Mutation p.N923I 0.10 deleterious_low_confidence(0) benign(0.022) TCGA-CV-6961-01 9 43627818 43627818 G A SPATA31A6 Missense_Mutation p.S290L 0.47 tolerated(0.52) benign(0) TCGA-CV-6961-01 9 6413477 6413477 C T UHRF2 5'UTR 0.30 TCGA-CV-6961-01 9 74526632 74526632 G T C9orf85 5'UTR 0.21 TCGA-CV-6961-01 9 79244121 79244121 C T PRUNE2 Missense_Mutation p.E3046K 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-CV-6961-01 9 8524994 8524994 T C PTPRD Missense_Mutation p.K204E 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-CV-6961-01 9 86276731 86276731 C T UBQLN1 Missense_Mutation p.E581K 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-CV-6961-01 9 86518439 86518439 G C KIF27 Missense_Mutation p.L332V 0.21 deleterious(0) probably_damaging(0.957) TCGA-CV-6961-01 9 95481630 95481630 C G BICD2 Missense_Mutation p.E433Q 0.09 deleterious(0.03) probably_damaging(0.994) TCGA-CV-6961-01 X 100532640 100532640 C G TAF7L Missense_Mutation p.L301F 0.16 deleterious(0.04) benign(0.027) TCGA-CV-6961-01 X 114238635 114238635 G A IL13RA2 3'UTR 0.50 TCGA-CV-6961-01 X 115585606 115585606 C T SLC6A14 Nonsense_Mutation p.Q468* 0.45 TCGA-CV-6961-01 X 119738100 119738100 G C MCTS1 5'Flank 0.25 TCGA-CV-6961-01 X 122866817 122866817 G A THOC2 Missense_Mutation p.S19L 0.15 deleterious(0.02) benign(0.073) TCGA-CV-6961-01 X 151870254 151870254 G C MAGEA6 Nonstop_Mutation p.*315Sext*2 0.33 TCGA-CV-6961-01 X 153760233 153760233 C A G6PD Silent p.V540V 0.41 TCGA-CV-6961-01 X 15560113 15560113 G T BMX Missense_Mutation p.S468I 0.41 deleterious(0.01) benign(0.402) TCGA-CV-6961-01 X 32398771 32398771 C A DMD Missense_Mutation p.E1567D 0.55 possibly_damaging(0.764) TCGA-CV-6961-01 X 41000592 41000592 G A USP9X Missense_Mutation p.E357K 0.64 deleterious(0) probably_damaging(0.952) TCGA-CV-6961-01 X 46472745 46472745 C G SLC9A7 Silent p.L635L 0.41 TCGA-CV-6961-01 X 47485839 47485839 G A CFP Silent p.I340I 0.57 TCGA-CV-6961-01 X 49958507 49958507 A G AKAP4 Missense_Mutation p.M286T 0.42 tolerated(0.59) possibly_damaging(0.505) TCGA-CV-6961-01 X 53602642 53602642 C G HUWE1 Missense_Mutation p.Q1997H 0.43 possibly_damaging(0.716) TCGA-CV-6961-01 X 71401627 71401627 G A PIN4 Missense_Mutation p.A23T 0.29 tolerated_low_confidence(0.34) benign(0.001) TCGA-CV-6961-01 X 74519710 74519710 C A UPRT Missense_Mutation p.L235I 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6962-01 10 115384664 115384664 T A NRAP Missense_Mutation p.Q757L 0.74 deleterious(0) benign(0.375) TCGA-CV-6962-01 10 131640476 131640476 C A EBF3 Missense_Mutation p.G417C 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.518) TCGA-CV-6962-01 10 28270429 28270429 T C ARMC4 Missense_Mutation p.K301R 0.82 tolerated(0.41) benign(0.007) TCGA-CV-6962-01 10 33199209 33199209 A C ITGB1 Nonsense_Mutation p.Y702* 0.65 TCGA-CV-6962-01 10 48388214 48388214 G T RBP3 Silent p.P888P 0.56 TCGA-CV-6962-01 10 61819590 61819590 G T ANK3 Intron 0.71 TCGA-CV-6962-01 11 113266828 113266828 G C ANKK1 Missense_Mutation p.G241A 0.30 deleterious(0) probably_damaging(0.98) TCGA-CV-6962-01 11 124294456 124294456 A C OR8B4 Missense_Mutation p.C104W 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CV-6962-01 11 17139063 17139063 C T PIK3C2A Missense_Mutation p.R1064K 0.80 tolerated(0.62) benign(0.007) TCGA-CV-6962-01 11 21596607 21596607 A G NELL1 3'UTR 0.77 TCGA-CV-6962-01 11 284488 284488 G A NLRP6 Missense_Mutation p.D796N 0.69 tolerated(0.46) benign(0.001) TCGA-CV-6962-01 11 4967665 4967665 G C OR51A4 Missense_Mutation p.I222M 0.64 deleterious(0.01) possibly_damaging(0.834) TCGA-CV-6962-01 11 55432771 55432771 T C OR4C6 Silent p.I43I 0.56 TCGA-CV-6962-01 11 55861497 55861497 C A OR8I2 Silent p.S238S 0.48 TCGA-CV-6962-01 11 55904545 55904545 G T OR8J3 Missense_Mutation p.S217Y 0.37 deleterious(0) probably_damaging(0.934) TCGA-CV-6962-01 11 59224764 59224764 G T OR4D6 Missense_Mutation p.D111Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-6962-01 11 64577227 64577227 T A MEN1 Nonsense_Mutation p.K119* 0.54 TCGA-CV-6962-01 11 75907652 75907652 A G WNT11 Missense_Mutation p.L65P 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-CV-6962-01 11 82881002 82881002 C A PCF11 Missense_Mutation p.P1209T 0.44 deleterious(0.01) benign(0.031) TCGA-CV-6962-01 11 85396180 85396180 G A CCDC89 Missense_Mutation p.R332C 0.24 deleterious(0.01) probably_damaging(0.943) TCGA-CV-6962-01 12 110427583 110427583 C T GIT2 Missense_Mutation p.G71S 0.30 deleterious(0) probably_damaging(1) TCGA-CV-6962-01 12 11421068 11421068 G A PRB3 Nonsense_Mutation p.R39* 0.38 TCGA-CV-6962-01 12 130892304 130892304 G T RIMBP2 Missense_Mutation p.D964E 0.32 deleterious(0) probably_damaging(0.955) TCGA-CV-6962-01 12 132491260 132491260 C T EP400 Missense_Mutation p.P1048S 0.49 unknown(0) TCGA-CV-6962-01 12 44917184 44917184 A T NELL2 Missense_Mutation p.C680S 0.24 deleterious(0.03) possibly_damaging(0.843) TCGA-CV-6962-01 12 52884517 52884640 12:52884517-52884640 - KRT6A large deletion p.X305_splice 0.19 TCGA-CV-6962-01 12 53662897 53662897 C A ESPL1 Nonsense_Mutation p.C57* 0.55 TCGA-CV-6962-01 12 64505580 64505580 A G SRGAP1 Missense_Mutation p.Y653C 0.28 deleterious(0) probably_damaging(0.95) TCGA-CV-6962-01 12 76453961 76453988 AGATCGTGAACTTCCTCATAGAATTTGG - NAP1L1 Frame_Shift_Del p.A93Vfs*45 0.21 TCGA-CV-6962-01 12 98931317 98931317 A T TMPO 3'Flank 0.30 TCGA-CV-6962-01 13 108861972 108861972 T A LIG4 Missense_Mutation p.I549F 0.73 deleterious(0) possibly_damaging(0.839) TCGA-CV-6962-01 14 102391561 102391561 G C PPP2R5C Missense_Mutation p.L540F 0.69 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-CV-6962-01 14 73404779 73404779 G A DCAF4 Splice_Site p.X31_splice 0.67 TCGA-CV-6962-01 15 74425610 74425610 C A ISLR2 Missense_Mutation p.A172E 0.88 deleterious(0) probably_damaging(0.999) TCGA-CV-6962-01 15 84582032 84582032 C A ADAMTSL3 Missense_Mutation p.A630D 0.81 tolerated(0.57) benign(0.066) TCGA-CV-6962-01 16 22134933 22134933 G T VWA3A Splice_Site p.X480_splice 0.31 TCGA-CV-6962-01 16 23391989 23391989 G - SCNN1B Frame_Shift_Del p.R597Pfs*79 0.32 TCGA-CV-6962-01 16 23646401 23646401 G A PALB2 Missense_Mutation p.S489F 0.11 tolerated(0.12) benign(0.042) TCGA-CV-6962-01 16 29000849 29000849 G - LAT Frame_Shift_Del p.E202Sfs*7 0.30 TCGA-CV-6962-01 16 343545 343545 G C AXIN1 Missense_Mutation p.A710G 0.78 deleterious(0.03) benign(0.081) TCGA-CV-6962-01 16 343549 343549 C T AXIN1 Missense_Mutation p.E709K 0.79 deleterious(0.01) benign(0.117) TCGA-CV-6962-01 16 3788605 3788605 T C CREBBP Missense_Mutation p.Y1450C 0.88 unknown(0) TCGA-CV-6962-01 16 72094177 72094178 TC - HP Frame_Shift_Del p.F205Pfs*29 0.38 TCGA-CV-6962-01 16 84214963 84214963 G A TAF1C Missense_Mutation p.R405C 0.79 deleterious(0) probably_damaging(0.987) TCGA-CV-6962-01 17 1386944 1386944 G A MYO1C Missense_Mutation p.R103C 0.29 deleterious(0.04) probably_damaging(0.984) TCGA-CV-6962-01 17 21319078 21319078 A T KCNJ12 Missense_Mutation p.T142S 0.17 tolerated(0.22) benign(0.295) TCGA-CV-6962-01 17 25783823 25783823 A T KSR1 Missense_Mutation p.I52F 0.47 deleterious(0.03) possibly_damaging(0.719) TCGA-CV-6962-01 17 28534763 28534763 G C SLC6A4 Missense_Mutation p.P546R 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-6962-01 17 30668273 30668273 G A C17orf75 Silent p.D57D 0.39 TCGA-CV-6962-01 17 32963160 32963160 C G TMEM132E Missense_Mutation p.S614R 0.21 deleterious(0.01) possibly_damaging(0.756) TCGA-CV-6962-01 17 34912940 34912940 G C GGNBP2 Missense_Mutation p.K64N 0.41 tolerated(0.43) benign(0.001) TCGA-CV-6962-01 17 3854894 3854894 G A ATP2A3 Missense_Mutation p.A102V 0.45 deleterious(0) possibly_damaging(0.749) TCGA-CV-6962-01 17 39616390 39616390 C A KRT32 Missense_Mutation p.C440F 0.41 deleterious(0) benign(0.205) TCGA-CV-6962-01 17 40734008 40734008 C A FAM134C Silent p.L408L 0.34 TCGA-CV-6962-01 17 42429495 42429495 C T GRN Missense_Mutation p.A431V 0.49 deleterious(0.04) benign(0.078) TCGA-CV-6962-01 17 44248899 44248899 C - KANSL1 Frame_Shift_Del p.G204Vfs*2 0.14 TCGA-CV-6962-01 17 48699024 48699024 C A CACNA1G Missense_Mutation p.P1977T 0.30 tolerated(0.11) benign(0.097) TCGA-CV-6962-01 17 53120624 53120624 G A STXBP4 Missense_Mutation p.D295N 0.31 deleterious(0.04) benign(0.043) TCGA-CV-6962-01 17 64224252 64224252 G C APOH Missense_Mutation p.P43A 0.45 tolerated(0.36) benign(0.103) TCGA-CV-6962-01 17 72613588 72613588 C T CD300E Silent p.K19K 0.59 TCGA-CV-6962-01 17 74732524 74732524 G C SRSF2 Missense_Mutation p.R129G 0.11 tolerated(0.16) unknown(0) TCGA-CV-6962-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.82 deleterious(0) probably_damaging(1) TCGA-CV-6962-01 17 8138161 8138161 G A CTC1 Missense_Mutation p.A508V 0.37 tolerated(0.61) possibly_damaging(0.628) TCGA-CV-6962-01 18 19239184 19239191 GTTCAGTG - ABHD3 Frame_Shift_Del p.P261Lfs*5 0.26 TCGA-CV-6962-01 18 21703803 21703803 C T TTC39C Nonsense_Mutation p.Q398* 0.33 TCGA-CV-6962-01 18 5291170 5291170 G A ZBTB14 Missense_Mutation p.P346L 0.36 tolerated(0.09) benign(0.422) TCGA-CV-6962-01 18 909477 909478 CG - ADCYAP1 Frame_Shift_Del p.A125Gfs*38 0.36 TCGA-CV-6962-01 19 11323947 11323947 G A DOCK6 Missense_Mutation p.L1466F 0.29 deleterious(0) probably_damaging(0.997) TCGA-CV-6962-01 19 11943141 11943141 C T ZNF440 Nonsense_Mutation p.R384* 0.52 TCGA-CV-6962-01 19 21132175 21132175 C A ZNF85 Silent p.P285P 0.45 TCGA-CV-6962-01 19 22836811 22836811 C - ZNF492 Frame_Shift_Del p.P43Qfs*24 0.38 TCGA-CV-6962-01 19 3179935 3179935 G A S1PR4 Missense_Mutation p.R382Q 0.47 tolerated(0.1) benign(0.062) TCGA-CV-6962-01 19 36037859 36037859 A G TMEM147 Silent p.L119L 0.50 TCGA-CV-6962-01 19 39013683 39013683 G A RYR1 Silent p.T3425T 0.57 TCGA-CV-6962-01 19 39361466 39361466 C T RINL Silent p.E256E 0.25 TCGA-CV-6962-01 19 41206235 41206235 T G ADCK4 Missense_Mutation p.S339R 0.24 tolerated(0.07) benign(0.04) TCGA-CV-6962-01 19 4365608 4365608 G A SH3GL1 Silent p.L68L 0.46 TCGA-CV-6962-01 19 44377859 44377881 TACAAATGCTTTTCCACATTCAT - ZNF404 Frame_Shift_Del p.N162Sfs*7 0.63 TCGA-CV-6962-01 19 4445358 4445358 C T UBXN6 3'UTR 0.13 TCGA-CV-6962-01 19 4498321 4498321 A G HDGFRP2 Missense_Mutation p.K474R 0.55 tolerated(0.29) unknown(0) TCGA-CV-6962-01 19 49535254 49535254 C A CGB2 5'UTR 0.26 TCGA-CV-6962-01 19 50482260 50482260 G T VRK3 Intron 0.31 TCGA-CV-6962-01 19 53644453 53644453 C T ZNF347 Missense_Mutation p.C544Y 0.53 deleterious(0.02) probably_damaging(0.932) TCGA-CV-6962-01 19 54265626 54265626 C T MIR519A2 RNA 0.53 TCGA-CV-6962-01 19 54746172 54746173 - T LILRA6 Frame_Shift_Ins p.P29Tfs*6 0.20 TCGA-CV-6962-01 19 59068277 59068277 C T UBE2M Silent p.K75K 0.70 TCGA-CV-6962-01 19 971943 971943 G C ARID3A Missense_Mutation p.G554R 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-CV-6962-01 1 109170788 109170788 G C FAM102B Splice_Site p.X186_splice 0.72 TCGA-CV-6962-01 1 110996644 110996644 G A PROK1 Missense_Mutation p.R45Q 0.64 deleterious(0.04) benign(0.072) TCGA-CV-6962-01 1 151259689 151259689 G T ZNF687 Missense_Mutation p.G308W 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-6962-01 1 151259690 151259690 G T ZNF687 Missense_Mutation p.G308V 0.39 deleterious(0.03) possibly_damaging(0.835) TCGA-CV-6962-01 1 151820766 151820766 A C THEM5 Missense_Mutation p.F156C 0.39 deleterious(0.04) benign(0.166) TCGA-CV-6962-01 1 156254990 156254996 TGGTAGA - TMEM79 5'UTR 0.34 TCGA-CV-6962-01 1 16058487 16058487 A G PLEKHM2 Missense_Mutation p.S857G 0.56 deleterious(0.02) benign(0.07) TCGA-CV-6962-01 1 161495385 161495385 C T HSPA6 Missense_Mutation p.R313C 0.13 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-CV-6962-01 1 167865864 167865864 G A ADCY10 Silent p.F236F 0.17 TCGA-CV-6962-01 1 170695536 170695536 C G PRRX1 Missense_Mutation p.P198R 0.40 deleterious(0) benign(0.402) TCGA-CV-6962-01 1 17668883 17668883 G A PADI4 Silent p.E307E 0.70 TCGA-CV-6962-01 1 180166570 180166570 G C QSOX1 3'UTR 0.37 TCGA-CV-6962-01 1 200967679 200967679 G A KIF21B Missense_Mutation p.A637V 0.42 deleterious(0.03) probably_damaging(0.989) TCGA-CV-6962-01 1 208216455 208216455 C T PLXNA2 Missense_Mutation p.R1323Q 0.48 tolerated(0.06) probably_damaging(0.979) TCGA-CV-6962-01 1 217955658 217955658 A G SPATA17 Missense_Mutation p.D289G 0.34 deleterious(0.02) possibly_damaging(0.858) TCGA-CV-6962-01 1 226340302 226340302 G C ACBD3 Missense_Mutation p.A370G 0.36 deleterious(0.01) benign(0.076) TCGA-CV-6962-01 1 227152980 227152993 TTCTCTGCCATGGG - ADCK3 Frame_Shift_Del p.F153Lfs*22 0.29 TCGA-CV-6962-01 1 229625736 229625736 G - NUP133 Frame_Shift_Del p.T387Mfs*2 0.27 TCGA-CV-6962-01 1 248202502 248202502 A C OR2L2 Missense_Mutation p.K311N 0.09 deleterious(0.03) benign(0.053) TCGA-CV-6962-01 1 48694899 48694899 G T SLC5A9 Intron 0.78 TCGA-CV-6962-01 1 65301898 65301898 C T JAK1 Nonsense_Mutation p.W1047* 0.73 TCGA-CV-6962-01 20 1472021 1472021 C - SIRPB2 5'UTR 0.31 TCGA-CV-6962-01 20 20177278 20177278 G A C20orf26 Missense_Mutation p.R552H 0.34 tolerated(0.07) probably_damaging(0.945) TCGA-CV-6962-01 20 44519288 44519288 T C NEURL2 Missense_Mutation p.I115V 0.83 tolerated(0.12) benign(0.289) TCGA-CV-6962-01 20 57045686 57045686 T G APCDD1L Missense_Mutation p.N56T 0.39 tolerated(0.17) benign(0.005) TCGA-CV-6962-01 21 10942773 10942773 A G TPTE Missense_Mutation p.V223A 0.15 deleterious(0) probably_damaging(0.988) TCGA-CV-6962-01 21 11098870 11098870 C A BAGE2 RNA 0.38 TCGA-CV-6962-01 21 22881352 22881352 T A NCAM2 Missense_Mutation p.L753H 0.47 deleterious(0) possibly_damaging(0.855) TCGA-CV-6962-01 21 30419482 30419482 C A USP16 Missense_Mutation p.F617L 0.83 deleterious(0) probably_damaging(0.997) TCGA-CV-6962-01 21 46935426 46935426 G A SLC19A1 3'UTR 0.62 TCGA-CV-6962-01 22 40658079 40658079 G T TNRC6B Missense_Mutation p.G120V 0.89 tolerated(0.11) probably_damaging(0.938) TCGA-CV-6962-01 2 100368683 100368683 C A AFF3 Missense_Mutation p.K359N 0.30 deleterious(0) probably_damaging(0.998) TCGA-CV-6962-01 2 141359067 141359067 A T LRP1B Missense_Mutation p.M2314K 0.25 benign(0.042) TCGA-CV-6962-01 2 159519912 159519912 A T PKP4 Missense_Mutation p.E844D 0.38 deleterious(0) probably_damaging(0.997) TCGA-CV-6962-01 2 172953027 172953027 C T DLX1 3'UTR 0.36 TCGA-CV-6962-01 2 179581995 179581995 C A TTN Missense_Mutation p.W8489L 0.47 TCGA-CV-6962-01 2 26654844 26654844 G T DRC1 Missense_Mutation p.M286I 0.43 tolerated(0.27) benign(0.001) TCGA-CV-6962-01 2 33482371 33482371 C A LTBP1 Missense_Mutation p.P730T 0.42 deleterious(0) probably_damaging(1) TCGA-CV-6962-01 2 43452544 43452545 - T ZFP36L2 Frame_Shift_Ins p.H133Qfs*341 0.35 TCGA-CV-6962-01 2 90458669 90458669 T A CH17-132F21.1 Silent p.P115P 0.05 TCGA-CV-6962-01 2 95481516 95481516 G T ANKRD20A8P RNA 0.33 TCGA-CV-6962-01 2 99767333 99767337 TGCCT - C2ORF15 3'UTR 0.38 TCGA-CV-6962-01 3 105572471 105572471 T C CBLB Missense_Mutation p.N69S 0.90 deleterious(0.04) benign(0.249) TCGA-CV-6962-01 3 109049294 109049294 T C DPPA4 Intron 0.47 TCGA-CV-6962-01 3 118623581 118623581 A T IGSF11 Missense_Mutation p.F256L 0.37 tolerated(0.48) benign(0.001) TCGA-CV-6962-01 3 127842655 127842655 T A RUVBL1 5'UTR 0.39 TCGA-CV-6962-01 3 160473993 160473993 C T PPM1L 5'Flank 0.11 TCGA-CV-6962-01 3 171431702 171431702 G A PLD1 Nonsense_Mutation p.R298* 0.89 TCGA-CV-6962-01 3 185986617 185986617 C T DGKG Silent p.A363A 0.41 TCGA-CV-6962-01 3 197687077 197687077 A - LMLN 5'Flank 0.43 TCGA-CV-6962-01 3 36873305 36873305 C A TRANK1 Missense_Mutation p.R2546L 0.79 tolerated(0.27) benign(0.021) TCGA-CV-6962-01 3 9055160 9055160 C A SRGAP3 Missense_Mutation p.G660V 0.17 deleterious(0) probably_damaging(1) TCGA-CV-6962-01 3 97888085 97888085 C A OR5H15 Missense_Mutation p.T181N 0.81 deleterious(0) benign(0) TCGA-CV-6962-01 4 65274963 65274963 A G TECRL Missense_Mutation p.L36S 0.23 deleterious_low_confidence(0) benign(0.432) TCGA-CV-6962-01 4 71201892 71201892 A T CABS1 Missense_Mutation p.E379V 0.67 deleterious(0) benign(0.233) TCGA-CV-6962-01 4 73984419 73984419 C G ANKRD17 Missense_Mutation p.A1392P 0.70 possibly_damaging(0.722) TCGA-CV-6962-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.46 TCGA-CV-6962-01 5 128796153 128796153 C T ADAMTS19 Silent p.F17F 0.75 TCGA-CV-6962-01 5 140734960 140734960 C T PCDHGA4 Missense_Mutation p.R65C 0.70 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-6962-01 5 169472903 169472904 - A DOCK2 Frame_Shift_Ins p.N1321Kfs*10 0.23 TCGA-CV-6962-01 5 77714718 77714718 T - SCAMP1 Frame_Shift_Del p.L155Cfs*7 0.50 TCGA-CV-6962-01 6 17764996 17764996 C A KIF13A Missense_Mutation p.R1588L 0.65 tolerated_low_confidence(0.21) possibly_damaging(0.564) TCGA-CV-6962-01 6 26217266 26217266 G A HIST1H2AE Missense_Mutation p.A22T 0.64 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-6962-01 7 100684754 100684754 G A MUC17 Missense_Mutation p.V3353I 0.55 benign(0.018) TCGA-CV-6962-01 7 100771855 100771855 G A SERPINE1 Missense_Mutation p.G61R 0.49 deleterious(0) probably_damaging(1) TCGA-CV-6962-01 7 104787081 104787081 G T SRPK2 Missense_Mutation p.H216N 0.21 deleterious(0) probably_damaging(0.991) TCGA-CV-6962-01 7 107234422 107234422 A G BCAP29 Silent p.K72K 0.58 TCGA-CV-6962-01 7 107831704 107831704 C T NRCAM Missense_Mutation p.V643I 0.39 tolerated(0.65) benign(0) TCGA-CV-6962-01 7 108154727 108154727 C T PNPLA8 Missense_Mutation p.R356K 0.50 tolerated(0.21) benign(0.035) TCGA-CV-6962-01 7 123508362 123508362 G A HYAL4 Missense_Mutation p.C12Y 0.35 tolerated_low_confidence(1) benign(0) TCGA-CV-6962-01 7 128488731 128488731 C G FLNC Missense_Mutation p.A1566G 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-6962-01 7 130418557 130418557 C T KLF14 Missense_Mutation p.E102K 0.45 tolerated(0.22) benign(0.055) TCGA-CV-6962-01 7 142568363 142568363 G T EPHB6 Missense_Mutation p.G961V 0.22 deleterious(0) probably_damaging(0.959) TCGA-CV-6962-01 7 150325295 150325295 G A GIMAP6 Nonsense_Mutation p.Q131* 0.16 TCGA-CV-6962-01 7 18625006 18625006 G A HDAC9 Missense_Mutation p.R42H 0.35 deleterious(0.02) probably_damaging(0.99) TCGA-CV-6962-01 7 24874174 24874174 G A OSBPL3 Silent p.L559L 0.39 TCGA-CV-6962-01 7 43503399 43503399 G A HECW1 Splice_Site p.X931_splice 0.42 TCGA-CV-6962-01 7 43982686 43982686 G - UBE2D4 Intron 0.28 TCGA-CV-6962-01 7 45614734 45614734 G T ADCY1 Missense_Mutation p.V198F 0.37 deleterious(0) benign(0.299) TCGA-CV-6962-01 7 5391493 5391493 C T TNRC18 Silent p.A1809A 0.59 TCGA-CV-6962-01 7 94038122 94038122 C A COL1A2 Missense_Mutation p.A260D 0.09 unknown(0) TCGA-CV-6962-01 7 94996800 94996800 T C PON3 Missense_Mutation p.D123G 0.57 deleterious(0.01) possibly_damaging(0.633) TCGA-CV-6962-01 7 97488686 97488686 G A ASNS Missense_Mutation p.A171V 0.38 tolerated(0.31) benign(0.004) TCGA-CV-6962-01 8 110099852 110099852 C A TRHR Silent p.G37G 0.42 TCGA-CV-6962-01 8 110980617 110980617 G T KCNV1 Missense_Mutation p.D401E 0.35 tolerated(0.8) probably_damaging(0.997) TCGA-CV-6962-01 8 22864434 22864434 C T RHOBTB2 Missense_Mutation p.R248W 0.72 deleterious(0) probably_damaging(0.919) TCGA-CV-6962-01 8 23243522 23243522 A T LOXL2 Intron 0.72 TCGA-CV-6962-01 8 49637271 49637271 T A EFCAB1 3'UTR 0.31 TCGA-CV-6962-01 9 115407987 115407987 A G KIAA1958 Missense_Mutation p.D410G 0.29 tolerated(0.32) benign(0.043) TCGA-CV-6962-01 9 139412359 139412359 C T NOTCH1 Missense_Mutation p.C429Y 0.49 deleterious(0) probably_damaging(0.999) TCGA-CV-6962-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.90 TCGA-CV-6962-01 X 101857639 101857639 A T ARMCX5 Missense_Mutation p.E190D 0.86 tolerated(0.14) probably_damaging(0.991) TCGA-CV-6962-01 X 119421060 119421060 G T TMEM255A Nonsense_Mutation p.Y124* 0.03 TCGA-CV-6962-01 X 134166776 134166776 G - FAM127A 3'UTR 0.53 TCGA-CV-6962-01 X 140785697 140785697 T C SPANXD Silent p.R73R 0.78 TCGA-CV-6962-01 X 140984436 140984436 C A MAGEC3 Intron 0.83 TCGA-CV-6962-01 X 35966561 35966561 A G CXorf22 Silent p.E216E 0.80 TCGA-CV-6962-01 X 47271931 47271931 A C ZNF157 Missense_Mutation p.K153N 0.81 tolerated(0.05) benign(0.094) TCGA-CV-6962-01 X 55650824 55650824 C T FOXR2 Missense_Mutation p.P227L 0.89 deleterious(0.03) possibly_damaging(0.739) TCGA-CV-6962-01 X 73071310 73071310 C T XIST RNA 0.82 TCGA-CV-7089-01 10 102249138 102249138 C T SEC31B Missense_Mutation p.M1014I 0.18 tolerated(0.34) benign(0.001) TCGA-CV-7089-01 10 25701358 25701358 G A GPR158 Missense_Mutation p.D431N 0.05 tolerated(0.05) benign(0.147) TCGA-CV-7089-01 10 55955577 55955577 G C PCDH15 Missense_Mutation p.Q391E 0.13 deleterious(0.02) benign(0.341) TCGA-CV-7089-01 10 58118574 58118574 C G ZWINT Missense_Mutation p.K205N 0.12 deleterious(0.01) possibly_damaging(0.895) TCGA-CV-7089-01 10 79570931 79570931 C G DLG5 Missense_Mutation p.E1462Q 0.14 tolerated(0.14) benign(0.352) TCGA-CV-7089-01 10 87966143 87966143 G T GRID1 Silent p.V166V 0.21 TCGA-CV-7089-01 10 96306131 96306131 C T HELLS Intron 0.18 TCGA-CV-7089-01 11 128359290 128359290 T C ETS1 Missense_Mutation p.M144V 0.11 tolerated(0.06) benign(0.105) TCGA-CV-7089-01 11 132016253 132016253 G A NTM Nonsense_Mutation p.W82* 0.19 TCGA-CV-7089-01 11 36597850 36597850 C G RAG1 Missense_Mutation p.S999C 0.16 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-CV-7089-01 11 55761664 55761664 G A OR5F1 Silent p.A146A 0.12 TCGA-CV-7089-01 11 58891901 58891901 C T FAM111B Silent p.L111L 0.15 TCGA-CV-7089-01 11 59224763 59224763 A G OR4D6 Silent p.A110A 0.12 TCGA-CV-7089-01 11 61196678 61196678 T C CPSF7 Missense_Mutation p.I53M 0.15 tolerated(0.11) benign(0.181) TCGA-CV-7089-01 11 640646 640646 C G DRD4 3'UTR 0.09 TCGA-CV-7089-01 11 64813736 64813736 C T NAALADL1 Missense_Mutation p.E594K 0.19 tolerated(0.05) benign(0.007) TCGA-CV-7089-01 11 67431887 67431887 C T ALDH3B2 Missense_Mutation p.A285T 0.11 tolerated(0.1) benign(0.127) TCGA-CV-7089-01 12 107415889 107415889 T C CRY1 Silent p.P80P 0.15 TCGA-CV-7089-01 12 122991393 122991393 C T RSRC2 Silent p.L371L 0.10 TCGA-CV-7089-01 12 124832798 124832798 C T NCOR2 Missense_Mutation p.E1303K 0.14 possibly_damaging(0.908) TCGA-CV-7089-01 12 48188581 48188581 C T HDAC7 Missense_Mutation p.E474K 0.14 tolerated(0.07) possibly_damaging(0.492) TCGA-CV-7089-01 12 48888620 48888620 G A C12orf54 Silent p.L94L 0.08 TCGA-CV-7089-01 12 49165584 49165584 T C ADCY6 Missense_Mutation p.N987S 0.13 deleterious(0) possibly_damaging(0.617) TCGA-CV-7089-01 12 52309043 52309043 G A ACVRL1 Silent p.S269S 0.12 TCGA-CV-7089-01 12 53068744 53068744 C G KRT1 3'UTR 0.25 TCGA-CV-7089-01 12 69987352 69987352 A T CCT2 Missense_Mutation p.H314L 0.17 deleterious(0) possibly_damaging(0.876) TCGA-CV-7089-01 12 95603436 95603436 G A FGD6 Nonsense_Mutation p.Q542* 0.10 TCGA-CV-7089-01 13 100617654 100617654 C T ZIC5 Missense_Mutation p.E657K 0.15 deleterious(0.02) possibly_damaging(0.587) TCGA-CV-7089-01 13 52709904 52709904 G C NEK3 Missense_Mutation p.L407V 0.15 tolerated(0.38) benign(0.085) TCGA-CV-7089-01 14 104245113 104245113 T C PPP1R13B Missense_Mutation p.N108S 0.11 tolerated(0.41) benign(0.001) TCGA-CV-7089-01 14 106174257 106174257 C G IGHA1 Missense_Mutation p.D178H 0.14 tolerated(0.2) probably_damaging(0.996) TCGA-CV-7089-01 14 20443780 20443780 G A OR4K15 Missense_Mutation p.E35K 0.10 deleterious(0.01) possibly_damaging(0.484) TCGA-CV-7089-01 14 59792758 59792758 T - DAAM1 Frame_Shift_Del p.F380Sfs*26 0.11 TCGA-CV-7089-01 14 64564717 64564717 A G SYNE2 Silent p.K4053K 0.10 TCGA-CV-7089-01 15 49054667 49054667 T C CEP152 Missense_Mutation p.K828R 0.36 tolerated(0.09) possibly_damaging(0.731) TCGA-CV-7089-01 15 55622047 55622047 G A PIGB Missense_Mutation p.M216I 0.30 tolerated(0.35) benign(0.008) TCGA-CV-7089-01 15 62256970 62256970 G C VPS13C Missense_Mutation p.Q1048E 0.26 tolerated(0.65) benign(0.001) TCGA-CV-7089-01 15 73614875 73614875 C T HCN4 Missense_Mutation p.E1187K 0.23 tolerated_low_confidence(0.23) probably_damaging(0.952) TCGA-CV-7089-01 15 90328467 90328467 G C ANPEP 3'UTR 0.43 TCGA-CV-7089-01 15 90328529 90328529 G C ANPEP 3'UTR 0.29 TCGA-CV-7089-01 16 15130131 15130131 G A PDXDC1 Silent p.%3D 0.11 TCGA-CV-7089-01 16 2098710 2098710 G C TSC2 Missense_Mutation p.E32Q 0.09 deleterious(0.02) possibly_damaging(0.602) TCGA-CV-7089-01 16 31282283 31282283 C G ITGAM Missense_Mutation p.Q146E 0.16 tolerated(0.26) benign(0.004) TCGA-CV-7089-01 16 3434561 3434561 C T ZSCAN32 Missense_Mutation p.D166N 0.12 tolerated(0.09) benign(0.023) TCGA-CV-7089-01 16 50348223 50348223 C A ADCY7 Silent p.A959A 0.12 TCGA-CV-7089-01 17 10408257 10408257 G T MYH1 Missense_Mutation p.A854D 0.15 deleterious(0.03) possibly_damaging(0.493) TCGA-CV-7089-01 17 19850729 19850729 C T AKAP10 Missense_Mutation p.D323N 0.10 deleterious(0) possibly_damaging(0.753) TCGA-CV-7089-01 17 36927505 36927505 G C PIP4K2B Missense_Mutation p.I276M 0.15 deleterious(0.03) benign(0.292) TCGA-CV-7089-01 17 38241015 38241022 CATCGCAG - THRA Frame_Shift_Del p.R176Qfs*17 0.08 TCGA-CV-7089-01 17 39122956 39122956 G A KRT39 Silent p.L51L 0.14 TCGA-CV-7089-01 17 48148225 48148225 C T ITGA3 Nonsense_Mutation p.Q228* 0.14 TCGA-CV-7089-01 17 5048731 5048731 C T USP6 Missense_Mutation p.S675L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7089-01 17 56397485 56397485 G T BZRAP1 Silent p.T493T 0.15 TCGA-CV-7089-01 17 61838631 61838631 A C CCDC47 Missense_Mutation p.S210A 0.15 deleterious(0) probably_damaging(0.998) TCGA-CV-7089-01 17 64876761 64876761 G A CACNG5 Missense_Mutation p.R124H 0.13 tolerated(0.12) benign(0.077) TCGA-CV-7089-01 17 6510503 6510503 C G KIAA0753 Missense_Mutation p.Q639H 0.10 tolerated(0.48) benign(0.443) TCGA-CV-7089-01 17 6930392 6930392 G C BCL6B Missense_Mutation p.E437Q 0.06 deleterious(0.04) probably_damaging(0.987) TCGA-CV-7089-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-7089-01 17 7984278 7984278 G A ALOX12B Missense_Mutation p.P151S 0.10 deleterious(0.01) possibly_damaging(0.662) TCGA-CV-7089-01 17 79991361 79991361 C T RAC3 Silent p.L112L 0.09 TCGA-CV-7089-01 17 79991599 79991599 C G RAC3 Nonsense_Mutation p.S158* 0.17 TCGA-CV-7089-01 18 19995815 19995815 C T CTAGE1 Missense_Mutation p.E654K 0.09 tolerated(0.13) benign(0.099) TCGA-CV-7089-01 19 11200187 11200187 G C LDLR 5'UTR 0.16 TCGA-CV-7089-01 19 11532486 11532486 G A CCDC151 Silent p.F483F 0.14 TCGA-CV-7089-01 19 12951862 12951862 C G MAST1 Missense_Mutation p.S77W 0.18 deleterious(0) probably_damaging(0.991) TCGA-CV-7089-01 19 13065144 13065144 C G GADD45GIP1 Missense_Mutation p.E183Q 0.11 deleterious(0.01) benign(0.081) TCGA-CV-7089-01 19 16025612 16025612 C T CYP4F11 Silent p.T403T 0.15 TCGA-CV-7089-01 19 19603492 19603492 C G GATAD2A Missense_Mutation p.Q169E 0.08 deleterious(0) possibly_damaging(0.867) TCGA-CV-7089-01 19 2110168 2110168 C T AP3D1 Silent p.Q1077Q 0.17 TCGA-CV-7089-01 19 23544684 23544684 G T ZNF91 Missense_Mutation p.A366D 0.18 tolerated(0.07) benign(0.001) TCGA-CV-7089-01 19 2934164 2934164 C G ZNF77 Missense_Mutation p.E321Q 0.09 deleterious(0.02) probably_damaging(0.958) TCGA-CV-7089-01 19 37440746 37440746 T G ZNF568 Missense_Mutation p.F231V 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-CV-7089-01 19 38229377 38229377 C T ZNF573 3'UTR 0.12 TCGA-CV-7089-01 19 38781203 38781203 C G SPINT2 Missense_Mutation p.L194V 0.12 tolerated(0.5) benign(0.065) TCGA-CV-7089-01 19 40364331 40364331 C T FCGBP Missense_Mutation p.E4771K 0.12 probably_damaging(0.999) TCGA-CV-7089-01 19 40366539 40366539 C T FCGBP Silent p.Q4565Q 0.14 TCGA-CV-7089-01 19 44160641 44160641 T C PLAUR Silent p.E154E 0.16 TCGA-CV-7089-01 19 46142270 46142270 C T EML2 Intron 0.14 TCGA-CV-7089-01 19 52852486 52852486 C G ZNF610 Missense_Mutation p.Q21E 0.16 deleterious(0.01) benign(0.008) TCGA-CV-7089-01 19 55421380 55421380 G A NCR1 Missense_Mutation p.D213N 0.11 tolerated(0.14) benign(0.354) TCGA-CV-7089-01 19 56204351 56204351 C A EPN1 Missense_Mutation p.F490L 0.10 tolerated(0.18) benign(0.406) TCGA-CV-7089-01 19 5667066 5667066 G A SAFB Missense_Mutation p.E782K 0.11 deleterious(0.03) unknown(0) TCGA-CV-7089-01 1 103455092 103455092 C G COL11A1 Missense_Mutation p.M792I 0.06 unknown(0) TCGA-CV-7089-01 1 10425464 10425464 C T KIF1B Intron 0.23 TCGA-CV-7089-01 1 109824269 109824269 G C PSRC1 Missense_Mutation p.S164C 0.18 deleterious(0.01) possibly_damaging(0.745) TCGA-CV-7089-01 1 11017770 11017770 G A C1orf127 Missense_Mutation p.S199F 0.10 deleterious(0) possibly_damaging(0.648) TCGA-CV-7089-01 1 113238852 113238852 C T MOV10 Missense_Mutation p.T621I 0.10 deleterious(0) probably_damaging(0.972) TCGA-CV-7089-01 1 144816648 144816648 G C NBPF9 Missense_Mutation p.E260Q 0.12 tolerated(0.08) probably_damaging(0.979) TCGA-CV-7089-01 1 150722557 150722557 C T CTSS Missense_Mutation p.E240K 0.18 tolerated(1) benign(0.051) TCGA-CV-7089-01 1 154956218 154956218 G C FLAD1 Missense_Mutation p.R16S 0.05 benign(0.227) TCGA-CV-7089-01 1 155296505 155296505 G C RUSC1 Missense_Mutation p.E666Q 0.20 tolerated(0.16) probably_damaging(0.997) TCGA-CV-7089-01 1 158817562 158817562 T C MNDA Silent p.N344N 0.13 TCGA-CV-7089-01 1 179077353 179077353 C G ABL2 Missense_Mutation p.E1017Q 0.13 tolerated_low_confidence(0.54) benign(0.004) TCGA-CV-7089-01 1 19632584 19632584 G A AKR7A2 Silent p.A282A 0.13 TCGA-CV-7089-01 1 200376835 200376835 C G ZNF281 Missense_Mutation p.E667Q 0.08 deleterious(0) possibly_damaging(0.601) TCGA-CV-7089-01 1 200377024 200377024 C A ZNF281 Missense_Mutation p.D604Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-CV-7089-01 1 215823958 215823958 G A USH2A Silent p.S4773S 0.14 TCGA-CV-7089-01 1 21800026 21800026 C T NBPF3 Silent p.L296L 0.12 TCGA-CV-7089-01 1 223987709 223987709 T A TP53BP2 Missense_Mutation p.K459N 0.09 tolerated(0.06) probably_damaging(0.997) TCGA-CV-7089-01 1 27721255 27721255 C T GPR3 Missense_Mutation p.S318F 0.14 deleterious(0.01) possibly_damaging(0.758) TCGA-CV-7089-01 1 42045932 42045932 G A HIVEP3 Missense_Mutation p.P1513S 0.09 benign(0.004) TCGA-CV-7089-01 1 44424510 44424510 T C IPO13 Silent p.D659D 0.12 TCGA-CV-7089-01 1 46659359 46659359 C T POMGNT1 Intron 0.19 TCGA-CV-7089-01 1 86814621 86814621 G C ODF2L 3'UTR 0.12 TCGA-CV-7089-01 20 1115772 1115772 A G PSMF1 Missense_Mutation p.K125R 0.11 tolerated(0.19) benign(0.021) TCGA-CV-7089-01 20 31022294 31022294 A - ASXL1 Frame_Shift_Del p.C594Afs*109 0.09 TCGA-CV-7089-01 20 31608358 31608358 C A BPIFB2 Missense_Mutation p.L387I 0.08 tolerated(0.14) benign(0.058) TCGA-CV-7089-01 20 37524339 37524339 G C PPP1R16B Missense_Mutation p.K151N 0.17 deleterious(0.01) possibly_damaging(0.697) TCGA-CV-7089-01 20 58883604 58883604 C T MIR646 RNA 0.09 TCGA-CV-7089-01 20 62597525 62597525 G A ZNF512B Missense_Mutation p.R335C 0.13 deleterious(0) probably_damaging(0.998) TCGA-CV-7089-01 22 29121060 29121060 T C CHEK2 Missense_Mutation p.N209S 0.07 deleterious(0) probably_damaging(1) TCGA-CV-7089-01 22 42390724 42390724 C T SEPT3 Intron 0.13 TCGA-CV-7089-01 22 46652485 46652485 C T PKDREJ Silent p.G2245G 0.09 TCGA-CV-7089-01 22 46653078 46653078 G C PKDREJ Missense_Mutation p.H2048D 0.09 deleterious(0.01) possibly_damaging(0.843) TCGA-CV-7089-01 22 46653873 46653873 C T PKDREJ Missense_Mutation p.E1783K 0.10 deleterious(0.01) possibly_damaging(0.524) TCGA-CV-7089-01 22 46653935 46653935 C T PKDREJ Missense_Mutation p.R1762K 0.12 tolerated(0.96) benign(0.044) TCGA-CV-7089-01 22 46654045 46654045 C T PKDREJ Silent p.L1725L 0.11 TCGA-CV-7089-01 22 46654120 46654120 C T PKDREJ Silent p.K1700K 0.07 TCGA-CV-7089-01 22 46654124 46654124 C T PKDREJ Missense_Mutation p.R1699K 0.07 tolerated(0.42) benign(0.338) TCGA-CV-7089-01 22 46654251 46654251 C T PKDREJ Missense_Mutation p.E1657K 0.11 deleterious(0) possibly_damaging(0.899) TCGA-CV-7089-01 22 46654407 46654407 C G PKDREJ Missense_Mutation p.D1605H 0.10 deleterious(0.01) possibly_damaging(0.547) TCGA-CV-7089-01 22 46654584 46654584 C T PKDREJ Missense_Mutation p.D1546N 0.12 tolerated(0.34) benign(0.01) TCGA-CV-7089-01 22 46654864 46654864 C T PKDREJ Silent p.Q1452Q 0.10 TCGA-CV-7089-01 22 46654926 46654926 C T PKDREJ Missense_Mutation p.E1432K 0.10 deleterious(0) possibly_damaging(0.772) TCGA-CV-7089-01 22 46654948 46654948 C T PKDREJ Missense_Mutation p.M1424I 0.12 tolerated(1) benign(0) TCGA-CV-7089-01 22 51010730 51010730 C G CPT1B Missense_Mutation p.D454H 0.11 deleterious(0) probably_damaging(1) TCGA-CV-7089-01 2 113943603 113943603 G C PSD4 Missense_Mutation p.E467Q 0.12 deleterious_low_confidence(0) possibly_damaging(0.489) TCGA-CV-7089-01 2 120439337 120439337 G C TMEM177 Missense_Mutation p.R303T 0.10 deleterious(0) benign(0.294) TCGA-CV-7089-01 2 166854606 166854606 A G SCN1A Missense_Mutation p.F1473S 0.09 deleterious(0) probably_damaging(0.964) TCGA-CV-7089-01 2 179440094 179440094 C G TTN Missense_Mutation p.E23589Q 0.14 TCGA-CV-7089-01 2 180838488 180838488 G A CWC22 Missense_Mutation p.S208F 0.13 deleterious(0) probably_damaging(0.984) TCGA-CV-7089-01 2 220496825 220496825 G A SLC4A3 Missense_Mutation p.R343Q 0.07 deleterious(0.04) benign(0.219) TCGA-CV-7089-01 2 234602064 234602064 C G UGT1A6 Missense_Mutation p.F138L 0.12 tolerated(0.45) possibly_damaging(0.447) TCGA-CV-7089-01 2 73828456 73828456 G A ALMS1 Missense_Mutation p.E4002K 0.14 probably_damaging(0.999) TCGA-CV-7089-01 2 95941259 95941259 G T PROM2 Splice_Site p.X98_splice 0.10 TCGA-CV-7089-01 3 119134182 119134182 G A ARHGAP31 Missense_Mutation p.E1136K 0.07 tolerated(0.32) benign(0.345) TCGA-CV-7089-01 3 127646718 127646718 G A KBTBD12 Missense_Mutation p.M394I 0.12 deleterious(0.04) benign(0.026) TCGA-CV-7089-01 3 130452968 130452968 G C PIK3R4 Missense_Mutation p.Q292E 0.11 tolerated(0.3) benign(0.266) TCGA-CV-7089-01 3 130463505 130463505 G C PIK3R4 Missense_Mutation p.F186L 0.19 deleterious(0) possibly_damaging(0.547) TCGA-CV-7089-01 3 141163924 141163924 G T ZBTB38 Missense_Mutation p.E898D 0.23 tolerated(0.15) probably_damaging(0.994) TCGA-CV-7089-01 3 148459824 148459824 G A AGTR1 Missense_Mutation p.M334I 0.13 tolerated(0.17) benign(0.002) TCGA-CV-7089-01 3 183778119 183778119 C G HTR3C Silent p.V441V 0.11 TCGA-CV-7089-01 3 190362120 190362121 - A IL1RAP Frame_Shift_Ins p.H379Qfs*19 0.24 TCGA-CV-7089-01 3 194118031 194118031 C G GP5 Silent p.L327L 0.12 TCGA-CV-7089-01 3 52623229 52623229 G C PBRM1 Nonsense_Mutation p.S941* 0.10 TCGA-CV-7089-01 3 64132920 64132920 G C PRICKLE2 Missense_Mutation p.L416V 0.17 tolerated(0.1) benign(0.11) TCGA-CV-7089-01 3 93617301 93617301 C G PROS1 Missense_Mutation p.K280N 0.07 tolerated(0.47) possibly_damaging(0.548) TCGA-CV-7089-01 4 123230492 123230492 A G KIAA1109 Silent p.A3375A 0.14 TCGA-CV-7089-01 4 1360143 1360143 C T UVSSA Silent p.D404D 0.11 TCGA-CV-7089-01 4 155254167 155254167 C T DCHS2 Missense_Mutation p.A566T 0.10 tolerated(0.08) benign(0.021) TCGA-CV-7089-01 4 187541760 187541760 C A FAT1 Nonsense_Mutation p.E1994* 0.29 TCGA-CV-7089-01 4 38134714 38134714 A G TBC1D1 Missense_Mutation p.M1048V 0.13 deleterious(0) possibly_damaging(0.649) TCGA-CV-7089-01 4 39910122 39910122 T C PDS5A Missense_Mutation p.I376V 0.14 tolerated(1) benign(0.021) TCGA-CV-7089-01 4 71346858 71346858 C A MUC7 Missense_Mutation p.P133T 0.10 tolerated(0.57) benign(0.036) TCGA-CV-7089-01 5 131819736 131819736 G A IRF1 Silent p.F295F 0.08 TCGA-CV-7089-01 5 139885401 139885401 G C ANKHD1 Missense_Mutation p.E1119Q 0.10 possibly_damaging(0.728) TCGA-CV-7089-01 5 149357721 149357721 G T SLC26A2 Missense_Mutation p.C169F 0.16 deleterious(0) probably_damaging(0.997) TCGA-CV-7089-01 5 77477328 77477328 T C AP3B1 Intron 0.17 TCGA-CV-7089-01 5 79030301 79030301 C G CMYA5 Missense_Mutation p.Q1905E 0.13 benign(0.015) TCGA-CV-7089-01 5 90136535 90136535 G C GPR98 Missense_Mutation p.E5584D 0.12 possibly_damaging(0.636) TCGA-CV-7089-01 6 126334221 126334221 C T TRMT11 Silent p.V371V 0.17 TCGA-CV-7089-01 6 157505453 157505453 A G ARID1B Missense_Mutation p.Y1145C 0.20 probably_damaging(1) TCGA-CV-7089-01 6 158924402 158924402 C T TULP4 Missense_Mutation p.S1236F 0.17 deleterious_low_confidence(0) possibly_damaging(0.553) TCGA-CV-7089-01 6 160211594 160211594 G T MRPL18 5'UTR 0.14 TCGA-CV-7089-01 6 167704889 167704889 C A UNC93A 5'UTR 0.11 TCGA-CV-7089-01 6 24205370 24205370 G T DCDC2 Intron 0.05 TCGA-CV-7089-01 6 29454874 29454874 G A MAS1L Missense_Mutation p.S269L 0.16 deleterious(0) benign(0.151) TCGA-CV-7089-01 6 32974913 32974913 G A HLA-DOA Silent p.G231G 0.13 TCGA-CV-7089-01 6 53516703 53516703 A G KLHL31 Missense_Mutation p.L533P 0.15 deleterious(0) probably_damaging(0.925) TCGA-CV-7089-01 7 107667339 107667339 C G LAMB4 Intron 0.12 TCGA-CV-7089-01 7 124404013 124404013 T C GPR37 Missense_Mutation p.I340V 0.14 tolerated(0.22) benign(0.009) TCGA-CV-7089-01 7 124503478 124503478 G A POT1 Missense_Mutation p.P158S 0.12 tolerated(0.06) benign(0.002) TCGA-CV-7089-01 7 124503479 124503479 C A POT1 Missense_Mutation p.Q157H 0.13 tolerated(0.05) benign(0.433) TCGA-CV-7089-01 7 138429966 138429966 G C ATP6V0A4 Missense_Mutation p.I460M 0.09 tolerated(0.35) benign(0.395) TCGA-CV-7089-01 7 148978631 148978631 G A ZNF783 Missense_Mutation p.E280K 0.14 tolerated(0.18) benign(0.017) TCGA-CV-7089-01 7 19765219 19765219 C A TMEM196 Missense_Mutation p.C126F 0.17 deleterious(0) unknown(0) TCGA-CV-7089-01 7 21775391 21775391 C T DNAH11 Missense_Mutation p.A2532V 0.09 benign(0.126) TCGA-CV-7089-01 7 34125426 34125426 C G BMPER Silent p.L489L 0.15 TCGA-CV-7089-01 7 48035654 48035654 C G SUN3 Missense_Mutation p.E223Q 0.13 deleterious(0.02) probably_damaging(0.927) TCGA-CV-7089-01 7 73466086 73466086 G C ELN Missense_Mutation p.G269A 0.10 unknown(0) TCGA-CV-7089-01 7 88964913 88964913 G A ZNF804B Missense_Mutation p.E873K 0.12 tolerated(0.29) benign(0.01) TCGA-CV-7089-01 7 92987685 92987685 C G CCDC132 Missense_Mutation p.I944M 0.13 tolerated(0.1) probably_damaging(0.945) TCGA-CV-7089-01 8 144620188 144620188 C T ZC3H3 Missense_Mutation p.R450K 0.09 tolerated(0.05) probably_damaging(0.996) TCGA-CV-7089-01 8 146067676 146067676 C G ZNF7 Nonsense_Mutation p.S395* 0.08 TCGA-CV-7089-01 8 73849039 73849039 C T KCNB2 Silent p.D483D 0.10 TCGA-CV-7089-01 8 94746869 94746869 A G RBM12B Silent p.P590P 0.21 TCGA-CV-7089-01 9 127990196 127990196 G T RABEPK Silent p.L178L 0.12 TCGA-CV-7089-01 9 130863479 130863479 G C SLC25A25 Missense_Mutation p.K122N 0.09 tolerated(0.23) benign(0.02) TCGA-CV-7089-01 9 135862790 135862790 G C GFI1B Missense_Mutation p.R74S 0.22 tolerated(0.71) benign(0.001) TCGA-CV-7089-01 9 139412690 139412690 G A NOTCH1 Missense_Mutation p.S385F 0.44 deleterious(0) possibly_damaging(0.563) TCGA-CV-7089-01 9 32632974 32632974 G A TAF1L Silent p.C868C 0.11 TCGA-CV-7089-01 9 35231142 35231142 G A UNC13B Silent p.L26L 0.11 TCGA-CV-7089-01 9 711776 711776 G A KANK1 Missense_Mutation p.R337Q 0.08 tolerated(0.81) benign(0.004) TCGA-CV-7089-01 9 91977216 91977216 C T SECISBP2 3'Flank 0.16 TCGA-CV-7089-01 9 99581236 99581236 G A ZNF782 Nonsense_Mutation p.Q357* 0.13 TCGA-CV-7089-01 X 101152892 101152892 A T ZMAT1 Missense_Mutation p.L152I 0.25 tolerated(0.07) possibly_damaging(0.521) TCGA-CV-7089-01 X 102864119 102864120 - A TCEAL3 Frame_Shift_Ins p.C44Mfs*8 0.25 TCGA-CV-7089-01 X 135862907 135862907 G A ARHGEF6 Silent p.I45I 0.07 TCGA-CV-7089-01 X 148072970 148072970 G T AFF2 3'UTR 0.36 TCGA-CV-7089-01 X 18192280 18192280 A C BEND2 Silent p.S617S 0.30 TCGA-CV-7089-01 X 19702122 19702122 T A SH3KBP1 Missense_Mutation p.E182V 0.16 deleterious(0) benign(0.035) TCGA-CV-7089-01 X 2825395 2825395 T C ARSD Missense_Mutation p.I567V 0.18 tolerated(0.73) benign(0.005) TCGA-CV-7089-01 X 53617986 53617986 G A HUWE1 Missense_Mutation p.P1357S 0.15 benign(0.092) TCGA-CV-7089-01 X 53619384 53619384 G C HUWE1 Missense_Mutation p.Q1316E 0.25 benign(0.027) TCGA-CV-7090-01 10 112257918 112257918 G C DUSP5 Missense_Mutation p.K13N 0.24 tolerated(0.12) benign(0.139) TCGA-CV-7090-01 10 35456674 35456674 T G CREM Intron 0.23 TCGA-CV-7090-01 11 28318421 28318421 C T METTL15 Nonsense_Mutation p.Q241* 0.13 TCGA-CV-7090-01 11 47305994 47305994 C A MADD Missense_Mutation p.Q679K 0.41 tolerated_low_confidence(0.28) benign(0.001) TCGA-CV-7090-01 11 71715073 71715073 G A NUMA1 Missense_Mutation p.R2066W 0.14 probably_damaging(0.986) TCGA-CV-7090-01 11 92088363 92088363 G T FAT3 Missense_Mutation p.V1029L 0.15 benign(0.174) TCGA-CV-7090-01 12 70974931 70974931 A G PTPRB Silent p.S821S 0.16 TCGA-CV-7090-01 13 60584694 60584694 G A DIAPH3 Missense_Mutation p.A294V 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7090-01 14 21360411 21360411 G T RNASE3 3'UTR 0.35 TCGA-CV-7090-01 14 94069729 94069729 C T UNC79 Missense_Mutation p.A1063V 0.14 deleterious(0.01) possibly_damaging(0.462) TCGA-CV-7090-01 15 26812809 26812809 T C GABRB3 Missense_Mutation p.M252V 0.20 deleterious(0.04) probably_damaging(0.996) TCGA-CV-7090-01 15 49329919 49329919 C T SECISBP2L Silent p.K24K 0.34 TCGA-CV-7090-01 16 90001360 90001360 C T TUBB3 Silent p.F167F 0.13 TCGA-CV-7090-01 17 29261281 29261281 G C ADAP2 Missense_Mutation p.R159T 0.56 tolerated(0.09) benign(0.013) TCGA-CV-7090-01 17 48745371 48745371 G A ABCC3 Splice_Site p.X594_splice 0.30 TCGA-CV-7090-01 17 57968230 57968230 G C TUBD1 Missense_Mutation p.S45C 0.31 tolerated(0.18) benign(0.033) TCGA-CV-7090-01 17 61570945 61570945 G A ACE Missense_Mutation p.V1021M 0.13 tolerated(0.13) possibly_damaging(0.816) TCGA-CV-7090-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.47 tolerated(0.13) possibly_damaging(0.631) TCGA-CV-7090-01 18 20833870 20833870 C G CABLES1 Silent p.L577L 0.12 TCGA-CV-7090-01 18 43490551 43490551 C A EPG5 Silent p.L1380L 0.21 TCGA-CV-7090-01 19 10476499 10476499 C G TYK2 Silent p.R235R 0.14 TCGA-CV-7090-01 19 34263279 34263279 G A CHST8 Missense_Mutation p.E196K 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7090-01 19 36727775 36727775 G A ZNF146 Missense_Mutation p.E145K 0.09 tolerated(0.75) possibly_damaging(0.671) TCGA-CV-7090-01 19 44833908 44833908 G A ZNF112 Silent p.L140L 0.16 TCGA-CV-7090-01 19 45317520 45317520 C T BCAM Missense_Mutation p.P299L 0.21 tolerated(0.11) benign(0.349) TCGA-CV-7090-01 19 52825750 52825750 G A ZNF480 Missense_Mutation p.R416Q 0.12 tolerated(0.61) possibly_damaging(0.684) TCGA-CV-7090-01 1 111495258 111495258 T G LRIF1 Missense_Mutation p.Q83P 0.23 deleterious(0.04) possibly_damaging(0.702) TCGA-CV-7090-01 1 170961470 170961470 G A MROH9 Silent p.A398A 0.07 TCGA-CV-7090-01 1 232940983 232940984 - A MAP10 Frame_Shift_Ins p.T74Nfs*14 0.26 TCGA-CV-7090-01 1 27099013 27099013 G C ARID1A Silent p.G1143G 0.20 TCGA-CV-7090-01 1 60381634 60381634 G A CYP2J2 Nonsense_Mutation p.R117* 0.13 TCGA-CV-7090-01 1 62593753 62593753 C T INADL Missense_Mutation p.T1718I 0.12 deleterious(0) probably_damaging(0.998) TCGA-CV-7090-01 21 36171600 36171601 - A RUNX1 Frame_Shift_Ins p.S322Ffs*278 0.13 TCGA-CV-7090-01 22 26083560 26083560 C T ADRBK2 Missense_Mutation p.R295W 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7090-01 3 119531666 119531666 A G NR1I2 Missense_Mutation p.E257G 0.07 tolerated(0.13) benign(0.374) TCGA-CV-7090-01 3 160025459 160025459 G A IFT80 Silent p.Y356Y 0.18 TCGA-CV-7090-01 3 38058058 38058058 C T PLCD1 Missense_Mutation p.A139T 0.21 deleterious(0.01) benign(0.366) TCGA-CV-7090-01 3 86028420 86028420 C A CADM2 Silent p.T352T 0.13 TCGA-CV-7090-01 4 155489613 155489613 A T FGB Nonsense_Mutation p.R267* 0.07 TCGA-CV-7090-01 4 367159 367159 C T ZNF141 Silent p.Y311Y 0.35 TCGA-CV-7090-01 4 7857195 7857195 G A AFAP1 Missense_Mutation p.S111L 0.23 deleterious(0) benign(0.14) TCGA-CV-7090-01 5 179195848 179195848 C T MAML1 Intron 0.20 TCGA-CV-7090-01 5 35014142 35014142 G A AGXT2 Missense_Mutation p.A349V 0.42 deleterious(0) probably_damaging(1) TCGA-CV-7090-01 6 133783832 133783832 C A EYA4 Silent p.G218G 0.16 TCGA-CV-7090-01 6 4087843 4087843 G A C6orf201 5'UTR 0.16 TCGA-CV-7090-01 7 126249445 126249445 C T GRM8 Missense_Mutation p.G489S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7090-01 7 20725391 20725391 C T ABCB5 Silent p.L648L 0.21 TCGA-CV-7090-01 7 33057128 33057128 C G NT5C3A Missense_Mutation p.E211Q 0.11 deleterious(0.05) possibly_damaging(0.696) TCGA-CV-7090-01 7 33390925 33390925 C G BBS9 Silent p.S509S 0.09 TCGA-CV-7090-01 8 103564263 103564263 G A ODF1 Missense_Mutation p.R103Q 0.12 tolerated(0.21) benign(0.004) TCGA-CV-7090-01 8 121259909 121259909 G A COL14A1 Missense_Mutation p.R846H 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7090-01 8 38021331 38021331 G T LSM1 Missense_Mutation p.L87I 0.08 deleterious(0.04) probably_damaging(0.982) TCGA-CV-7090-01 8 38067634 38067634 G C BAG4 Missense_Mutation p.D333H 0.09 tolerated(0.11) possibly_damaging(0.897) TCGA-CV-7090-01 8 38067849 38067849 G C BAG4 Missense_Mutation p.K404N 0.05 deleterious(0) probably_damaging(1) TCGA-CV-7090-01 9 139700965 139700965 C T CCDC183 Silent p.S373S 0.10 TCGA-CV-7090-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.40 TCGA-CV-7090-01 9 71851111 71851111 A T TJP2 Missense_Mutation p.I681F 0.12 deleterious(0) possibly_damaging(0.897) TCGA-CV-7090-01 9 87285568 87285578 GAGCCGCAAGC - NTRK2 5'UTR 0.32 TCGA-CV-7090-01 X 133609219 133609219 G A HPRT1 Missense_Mutation p.R48H 0.21 deleterious(0.01) benign(0.117) TCGA-CV-7090-01 X 79282319 79282319 C A TBX22 Silent p.S250S 0.59 TCGA-CV-7091-01 10 102740948 102740948 A G SEMA4G Missense_Mutation p.E556G 0.09 tolerated(0.23) possibly_damaging(0.794) TCGA-CV-7091-01 10 29824982 29824982 G C SVIL Missense_Mutation p.H282D 0.15 tolerated(0.51) benign(0.254) TCGA-CV-7091-01 10 97976475 97976475 G T BLNK Missense_Mutation p.P181T 0.21 deleterious(0) benign(0.191) TCGA-CV-7091-01 11 118938701 118938701 G A VPS11 Missense_Mutation p.R56Q 0.29 deleterious(0.02) probably_damaging(0.975) TCGA-CV-7091-01 11 2594162 2594162 C T KCNQ1 Silent p.N289N 0.44 TCGA-CV-7091-01 11 5528766 5528766 T A UBQLN3 3'UTR 0.40 TCGA-CV-7091-01 11 56230205 56230205 G A OR5M9 Missense_Mutation p.R225C 0.41 deleterious(0.03) benign(0.103) TCGA-CV-7091-01 11 64359177 64359177 G A SLC22A12 Nonsense_Mutation p.W50* 0.12 TCGA-CV-7091-01 11 65631092 65631092 G C MUS81 Silent p.L287L 0.09 TCGA-CV-7091-01 11 66262860 66262860 G C DPP3 Missense_Mutation p.E493Q 0.13 deleterious(0.04) benign(0.208) TCGA-CV-7091-01 11 66326764 66326764 G T CTSF 3'Flank 0.16 TCGA-CV-7091-01 11 66617734 66617734 T C PC Missense_Mutation p.K892R 0.20 tolerated(0.4) benign(0.016) TCGA-CV-7091-01 11 67821473 67821473 C T CHKA Silent p.K452K 0.23 TCGA-CV-7091-01 12 112518864 112518864 T G NAA25 Missense_Mutation p.Q159H 0.18 deleterious(0) possibly_damaging(0.855) TCGA-CV-7091-01 12 113306439 113306439 G T RPH3A Intron 0.56 TCGA-CV-7091-01 12 1289706 1289706 A C ERC1 Missense_Mutation p.I580L 0.35 tolerated(0.08) benign(0.09) TCGA-CV-7091-01 12 20876088 20876088 C A SLCO1C1 Missense_Mutation p.S362R 0.27 deleterious(0) probably_damaging(0.937) TCGA-CV-7091-01 12 46592498 46592498 T C SLC38A1 Silent p.K344K 0.27 TCGA-CV-7091-01 12 52200796 52200796 C A SCN8A Silent p.I1842I 0.28 TCGA-CV-7091-01 12 54106918 54106918 G C CALCOCO1 Missense_Mutation p.P622A 0.30 deleterious(0.01) probably_damaging(0.913) TCGA-CV-7091-01 12 55863389 55863389 G A OR6C70 Silent p.D178D 0.24 TCGA-CV-7091-01 12 69656338 69656338 A G CPSF6 Nonstop_Mutation p.*552Wext*30 0.15 TCGA-CV-7091-01 12 7843292 7843292 G T GDF3 Missense_Mutation p.L93I 0.33 tolerated(0.45) benign(0.441) TCGA-CV-7091-01 12 95694417 95694417 G C VEZT Missense_Mutation p.E770Q 0.09 tolerated_low_confidence(0.42) unknown(0) TCGA-CV-7091-01 13 46716545 46716545 A C LCP1 Missense_Mutation p.Y462D 0.25 deleterious(0) probably_damaging(0.998) TCGA-CV-7091-01 13 70535472 70535472 G A KLHL1 Missense_Mutation p.A262V 0.38 deleterious(0.03) probably_damaging(0.913) TCGA-CV-7091-01 13 77742684 77742684 G C MYCBP2 Missense_Mutation p.S1960W 0.19 probably_damaging(0.993) TCGA-CV-7091-01 14 102931608 102931608 G C TECPR2 Missense_Mutation p.M1257I 0.21 tolerated(0.39) benign(0.004) TCGA-CV-7091-01 14 39769088 39769088 A T CTAGE5 Silent p.V236V 0.09 TCGA-CV-7091-01 14 61997130 61997130 C A RP11-47I22.4 Silent p.L31L 0.17 TCGA-CV-7091-01 14 62541956 62541957 - A SYT16 Frame_Shift_Ins p.H282Tfs*31 0.23 TCGA-CV-7091-01 14 72925015 72925015 A C RGS6 Missense_Mutation p.Q91P 0.34 deleterious(0) possibly_damaging(0.53) TCGA-CV-7091-01 15 33955093 33955093 G T RYR3 Nonsense_Mutation p.E1788* 0.13 TCGA-CV-7091-01 15 63904544 63904544 C T HERC1 Missense_Mutation p.R4769Q 0.12 probably_damaging(0.997) TCGA-CV-7091-01 15 76629267 76629267 G A ISL2 Missense_Mutation p.G15S 0.14 deleterious(0.01) possibly_damaging(0.682) TCGA-CV-7091-01 16 19718478 19718478 G C KNOP1 Silent p.L377L 0.29 TCGA-CV-7091-01 16 28167615 28167615 T C XPO6 Missense_Mutation p.N293D 0.28 tolerated(0.65) benign(0.101) TCGA-CV-7091-01 16 2817671 2817671 C G SRRM2 Missense_Mutation p.T2381S 0.27 probably_damaging(0.986) TCGA-CV-7091-01 16 28508717 28508717 G C APOBR Silent p.V785V 0.31 TCGA-CV-7091-01 16 48395697 48395697 G A SIAH1 Missense_Mutation p.R246C 0.19 tolerated(0.07) benign(0.091) TCGA-CV-7091-01 16 57416529 57416529 T A CX3CL1 Missense_Mutation p.L260Q 0.32 tolerated(0.07) benign(0.014) TCGA-CV-7091-01 16 66584113 66584113 T C TK2 5'UTR 0.26 TCGA-CV-7091-01 16 70551611 70551611 T C COG4 Missense_Mutation p.K96R 0.32 tolerated(0.37) benign(0.004) TCGA-CV-7091-01 16 87365007 87365007 G C FBXO31 Missense_Mutation p.L503V 0.34 tolerated(0.18) possibly_damaging(0.877) TCGA-CV-7091-01 17 16875383 16875383 C A TNFRSF13B Missense_Mutation p.G3C 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-7091-01 17 46128746 46128746 C A NFE2L1 Missense_Mutation p.A89D 0.21 deleterious(0.01) possibly_damaging(0.451) TCGA-CV-7091-01 17 7557506 7557506 C T ATP1B2 Silent p.S161S 0.55 TCGA-CV-7091-01 17 7579718 7579718 A - TP53 Frame_Shift_Del p.P27Lfs*17 0.42 TCGA-CV-7091-01 17 79410355 79410355 C T RP11-1055B8.7 Silent p.A660A 0.30 TCGA-CV-7091-01 18 39629606 39629606 T G PIK3C3 Intron 0.26 TCGA-CV-7091-01 18 63547834 63547834 C T CDH7 Missense_Mutation p.P688S 0.22 tolerated(0.08) possibly_damaging(0.859) TCGA-CV-7091-01 18 65180979 65180979 C G DSEL Missense_Mutation p.Q299H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-7091-01 19 10753954 10753954 G A SLC44A2 Splice_Site p.X672_splice 0.50 TCGA-CV-7091-01 19 12186456 12186456 G A ZNF844 Missense_Mutation p.C174Y 0.33 deleterious(0) probably_damaging(0.926) TCGA-CV-7091-01 19 12639154 12639154 A C ZNF564 Missense_Mutation p.I52S 0.13 deleterious(0.04) benign(0) TCGA-CV-7091-01 19 14513676 14513676 T C CD97 Splice_Site p.X483_splice 0.29 TCGA-CV-7091-01 19 15989681 15989681 C T CYP4F2 Missense_Mutation p.R488H 0.11 tolerated(0.06) benign(0.178) TCGA-CV-7091-01 19 18084991 18084991 G C KCNN1 Silent p.A98A 0.21 TCGA-CV-7091-01 19 18191667 18191667 C T IL12RB1 Silent p.E128E 0.15 TCGA-CV-7091-01 19 44418581 44418581 G A ZNF45 Missense_Mutation p.A336V 0.30 tolerated(1) benign(0.104) TCGA-CV-7091-01 19 44418582 44418582 C T ZNF45 Missense_Mutation p.A336T 0.29 tolerated(0.91) benign(0.063) TCGA-CV-7091-01 19 52618924 52618924 C T ZNF616 Missense_Mutation p.C498Y 0.11 deleterious(0) probably_damaging(1) TCGA-CV-7091-01 19 55441964 55441964 G T NLRP7 Missense_Mutation p.L905I 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7091-01 19 56736473 56736473 T C ZSCAN5A Intron 0.25 TCGA-CV-7091-01 19 57089845 57089845 G A ZNF470 Missense_Mutation p.G683E 0.18 tolerated(0.14) probably_damaging(1) TCGA-CV-7091-01 19 57879930 57879930 G A ZNF547 Missense_Mutation p.E3K 0.10 tolerated(0.94) benign(0.036) TCGA-CV-7091-01 19 58862944 58862944 G T A1BG Missense_Mutation p.F241L 0.40 deleterious(0) probably_damaging(1) TCGA-CV-7091-01 19 59011917 59011917 G A SLC27A5 Missense_Mutation p.R447C 0.24 deleterious(0.03) benign(0.126) TCGA-CV-7091-01 19 8131097 8131097 C T FBN3 Silent p.L2712L 0.35 TCGA-CV-7091-01 19 8842012 8842012 A C OR2Z1 Missense_Mutation p.M208L 0.40 tolerated(1) benign(0.001) TCGA-CV-7091-01 19 9049680 9049680 C G MUC16 Missense_Mutation p.A10651P 0.18 benign(0.145) TCGA-CV-7091-01 1 103480090 103480090 G C COL11A1 Missense_Mutation p.Q517E 0.19 probably_damaging(0.983) TCGA-CV-7091-01 1 10719786 10719786 A T CASZ1 Missense_Mutation p.I438N 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-7091-01 1 109241970 109241980 GGGGTTAGAAC - PRPF38B Frame_Shift_Del p.G324Qfs*6 0.40 TCGA-CV-7091-01 1 152128471 152128471 A T RPTN Missense_Mutation p.S368R 0.16 deleterious(0.02) benign(0.105) TCGA-CV-7091-01 1 154029336 154029336 C T NUP210L Silent p.K1065K 0.08 TCGA-CV-7091-01 1 157557696 157557696 T A FCRL4 Missense_Mutation p.N174I 0.24 tolerated(0.31) possibly_damaging(0.69) TCGA-CV-7091-01 1 158046036 158046036 G C KIRREL Missense_Mutation p.M62I 0.28 tolerated(1) benign(0.005) TCGA-CV-7091-01 1 161130531 161130531 G A USP21 Missense_Mutation p.R34H 0.32 tolerated_low_confidence(0.06) benign(0.284) TCGA-CV-7091-01 1 204403072 204403072 C T PIK3C2B Missense_Mutation p.R1231H 0.11 deleterious(0) probably_damaging(1) TCGA-CV-7091-01 1 206669644 206669644 C T IKBKE 3'UTR 0.30 TCGA-CV-7091-01 1 237060420 237060420 T C MTR Splice_Site p.X1237_splice 0.16 TCGA-CV-7091-01 1 33134662 33134664 AGA - RBBP4 In_Frame_Del p.E231del 0.24 TCGA-CV-7091-01 1 3322204 3322204 C T PRDM16 Missense_Mutation p.P393L 0.16 deleterious(0) possibly_damaging(0.844) TCGA-CV-7091-01 1 84946675 84946675 A G RPF1 Missense_Mutation p.R89G 0.44 tolerated(0.11) benign(0.256) TCGA-CV-7091-01 20 3202541 3202541 C T ITPA Nonsense_Mutation p.Q156* 0.19 TCGA-CV-7091-01 20 33764086 33764086 G A PROCR Silent p.E146E 0.33 TCGA-CV-7091-01 20 44756788 44756788 C T CD40 Missense_Mutation p.R191W 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7091-01 20 46301111 46301111 C A SULF2 Silent p.T469T 0.11 TCGA-CV-7091-01 20 745904 745904 A G SLC52A3 Missense_Mutation p.I172T 0.16 tolerated(0.66) benign(0) TCGA-CV-7091-01 22 19950331 19950331 C T COMT Silent p.D94D 0.16 TCGA-CV-7091-01 22 21800083 21800083 G T HIC2 Missense_Mutation p.G300V 0.28 tolerated(0.08) probably_damaging(0.953) TCGA-CV-7091-01 22 24034239 24034239 C G RGL4 Missense_Mutation p.L8V 0.41 tolerated_low_confidence(0.08) benign(0.051) TCGA-CV-7091-01 22 31302140 31302140 C A OSBP2 Intron 0.36 TCGA-CV-7091-01 2 152586143 152586143 C T NEB Missense_Mutation p.E22K 0.39 unknown(0) TCGA-CV-7091-01 2 167060716 167060716 A G SCN9A Missense_Mutation p.I1497T 0.40 deleterious(0.02) benign(0.341) TCGA-CV-7091-01 2 179528604 179528604 G A TTN Silent p.I12130I 0.30 TCGA-CV-7091-01 2 189906418 189906418 C T COL5A2 Missense_Mutation p.G1176D 0.28 unknown(0) TCGA-CV-7091-01 2 196718132 196718132 C A DNAH7 Missense_Mutation p.G2906W 0.48 deleterious(0) probably_damaging(1) TCGA-CV-7091-01 2 207605810 207605810 G A MDH1B Missense_Mutation p.P476L 0.42 tolerated_low_confidence(0.32) benign(0) TCGA-CV-7091-01 2 33412051 33412051 C T LTBP1 Nonsense_Mutation p.Q444* 0.25 TCGA-CV-7091-01 2 55200252 55200252 C T RTN4 3'UTR 0.16 TCGA-CV-7091-01 2 80097053 80097053 A G CTNNA2 Missense_Mutation p.R193G 0.20 deleterious(0) possibly_damaging(0.808) TCGA-CV-7091-01 3 121712107 121712107 G A ILDR1 Missense_Mutation p.R497C 0.24 deleterious(0.01) possibly_damaging(0.549) TCGA-CV-7091-01 3 157815817 157815817 C T SHOX2 Silent p.%3D 0.22 TCGA-CV-7091-01 3 173996813 173996813 A T NLGN1 Missense_Mutation p.E341V 0.25 deleterious(0.03) probably_damaging(0.933) TCGA-CV-7091-01 3 17418038 17418038 G C TBC1D5 Missense_Mutation p.A227G 0.34 deleterious(0.02) possibly_damaging(0.512) TCGA-CV-7091-01 3 194152587 194152587 T A ATP13A3 Missense_Mutation p.R760S 0.17 deleterious(0) probably_damaging(0.995) TCGA-CV-7091-01 3 197009585 197009585 C G DLG1 Missense_Mutation p.E95Q 0.09 tolerated_low_confidence(0.29) benign(0.019) TCGA-CV-7091-01 3 28365639 28365639 C T AZI2 Missense_Mutation p.S358N 0.42 tolerated(0.54) benign(0.025) TCGA-CV-7091-01 3 50313227 50313227 G A LSMEM2 5'Flank 0.41 TCGA-CV-7091-01 3 50330076 50330076 C A IFRD2 5'Flank 0.38 TCGA-CV-7091-01 3 97868655 97868655 C G OR5H14 Missense_Mutation p.I142M 0.08 tolerated(0.07) benign(0.099) TCGA-CV-7091-01 4 113540154 113540156 TGT A C4orf21 Frame_Shift_Del p.T348* 0.43 TCGA-CV-7091-01 4 147560567 147560567 T A POU4F2 Missense_Mutation p.L92H 0.36 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-CV-7091-01 4 166000814 166000814 G C TMEM192 Missense_Mutation p.T271R 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.627) TCGA-CV-7091-01 4 187627774 187627774 G A FAT1 Nonsense_Mutation p.R1070* 0.40 TCGA-CV-7091-01 4 7056447 7056447 C T TADA2B Missense_Mutation p.A310V 0.44 tolerated(0.28) benign(0.002) TCGA-CV-7091-01 4 74606300 74606300 A G IL8 5'UTR 0.14 TCGA-CV-7091-01 5 13719088 13719088 A G DNAH5 Silent p.A4134A 0.19 TCGA-CV-7091-01 5 140263365 140263365 G A PCDHA13 Silent p.L504L 0.37 TCGA-CV-7091-01 5 141026991 141026991 G A FCHSD1 Missense_Mutation p.H268Y 0.47 deleterious(0.02) benign(0.071) TCGA-CV-7091-01 5 36124341 36124341 G C LMBRD2 Missense_Mutation p.I258M 0.15 deleterious(0) possibly_damaging(0.691) TCGA-CV-7091-01 5 37057315 37057315 A G NIPBL Missense_Mutation p.I2431V 0.21 tolerated(0.43) benign(0.032) TCGA-CV-7091-01 5 74696051 74696051 C G COL4A3BP Silent p.G491G 0.39 TCGA-CV-7091-01 6 1395131 1395131 C A FOXF2 3'UTR 0.14 TCGA-CV-7091-01 6 151686959 151686959 G C ZBTB2 Missense_Mutation p.S414R 0.12 deleterious(0.03) probably_damaging(0.979) TCGA-CV-7091-01 6 26055978 26055978 G A HIST1H1C 3'UTR 0.17 TCGA-CV-7091-01 6 32975992 32975992 G A HLA-DOA Silent p.G43G 0.24 TCGA-CV-7091-01 6 43322436 43322436 G A ZNF318 Missense_Mutation p.S879F 0.34 probably_damaging(0.998) TCGA-CV-7091-01 6 43582058 43582058 G A POLH Missense_Mutation p.E636K 0.19 deleterious(0) possibly_damaging(0.616) TCGA-CV-7091-01 6 49754449 49754449 C T PGK2 Missense_Mutation p.R151Q 0.18 tolerated(0.11) benign(0.086) TCGA-CV-7091-01 7 12263954 12263954 A G TMEM106B Silent p.V128V 0.28 TCGA-CV-7091-01 7 142494819 142494819 C G TRBJ2-5 Nonsense_Mutation p.Y6* 0.43 TCGA-CV-7091-01 7 44579405 44579405 G A NPC1L1 Silent p.C197C 0.26 TCGA-CV-7091-01 7 44579406 44579406 C A NPC1L1 Missense_Mutation p.C197F 0.26 deleterious(0) probably_damaging(0.997) TCGA-CV-7091-01 7 95775995 95775995 T A SLC25A13 Missense_Mutation p.Q443L 0.46 deleterious(0) probably_damaging(0.985) TCGA-CV-7091-01 8 101299760 101299760 C T RNF19A Missense_Mutation p.D215N 0.33 tolerated(0.08) probably_damaging(1) TCGA-CV-7091-01 8 10388887 10388887 C T PRSS55 Missense_Mutation p.L144F 0.17 tolerated(0.09) benign(0.038) TCGA-CV-7091-01 8 105503080 105503081 - TGAG LRP12 Frame_Shift_Ins p.D801Lfs*8 0.24 TCGA-CV-7091-01 8 113259327 113259328 - T CSMD3 Frame_Shift_Ins p.G3382Rfs*15 0.25 TCGA-CV-7091-01 8 113267646 113267646 A T CSMD3 Nonsense_Mutation p.C3291* 0.16 TCGA-CV-7091-01 8 116631670 116631670 C T TRPS1 Missense_Mutation p.V219M 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.632) TCGA-CV-7091-01 8 139642988 139642988 C A COL22A1 Missense_Mutation p.A1205S 0.24 unknown(0) TCGA-CV-7091-01 8 2040177 2040177 T C MYOM2 Missense_Mutation p.V611A 0.42 tolerated(0.12) benign(0.003) TCGA-CV-7091-01 8 2820010 2820010 G A CSMD1 Silent p.S3202S 0.13 TCGA-CV-7091-01 8 30977842 30977842 C A WRN Missense_Mutation p.D844E 0.30 tolerated(1) benign(0) TCGA-CV-7091-01 8 68150679 68150679 C G ARFGEF1 Missense_Mutation p.G1063A 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7091-01 8 73850088 73850088 G C KCNB2 Missense_Mutation p.C833S 0.28 tolerated_low_confidence(0.48) benign(0.254) TCGA-CV-7091-01 8 77767248 77767248 G A ZFHX4 Silent p.R2697R 0.21 TCGA-CV-7091-01 8 90926441 90926441 G A OSGIN2 Silent p.Q112Q 0.24 TCGA-CV-7091-01 9 103090242 103090242 T C TEX10 Missense_Mutation p.Y543C 0.29 tolerated(0.08) benign(0.428) TCGA-CV-7091-01 9 140137973 140137973 G A TUBB4B Missense_Mutation p.E435K 0.52 tolerated_low_confidence(0.17) unknown(0) TCGA-CV-7091-01 9 71555671 71555671 C G PIP5K1B Missense_Mutation p.H489Q 0.36 tolerated_low_confidence(0.25) benign(0) TCGA-CV-7091-01 X 114540929 114540929 A G LUZP4 Missense_Mutation p.R168G 0.68 deleterious(0.01) possibly_damaging(0.895) TCGA-CV-7091-01 X 12735807 12735807 G A FRMPD4 Silent p.P954P 0.63 TCGA-CV-7091-01 X 1508618 1508618 G C SLC25A6 Silent p.V38V 0.12 TCGA-CV-7091-01 X 23724804 23724804 G A ACOT9 Silent p.A261A 0.27 TCGA-CV-7091-01 X 23801827 23801827 G A SAT1 Splice_Site p.X40_splice 0.43 TCGA-CV-7091-01 X 54955857 54955857 T G TRO Silent p.G900G 0.05 TCGA-CV-7091-01 X 92927031 92927031 C T NAP1L3 Missense_Mutation p.G425R 0.60 deleterious(0) probably_damaging(0.995) TCGA-CV-7095-01 10 27423860 27423860 G A YME1L1 Silent p.L254L 0.27 TCGA-CV-7095-01 10 3178029 3178029 G C PFKP Missense_Mutation p.E742Q 0.20 tolerated(0.15) benign(0.002) TCGA-CV-7095-01 10 43015372 43015372 G A ZNF37BP RNA 0.25 TCGA-CV-7095-01 10 84745207 84745207 G T NRG3 Missense_Mutation p.R646L 0.33 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-CV-7095-01 10 95791019 95791019 T C PLCE1 Silent p.I72I 0.32 TCGA-CV-7095-01 10 95791437 95791437 G T PLCE1 Missense_Mutation p.D212Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-CV-7095-01 10 95791784 95791784 G C PLCE1 Missense_Mutation p.R327S 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-7095-01 10 95791831 95791831 G C PLCE1 Missense_Mutation p.G343A 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7095-01 11 134072795 134072795 A G NCAPD3 Missense_Mutation p.S511P 0.47 tolerated(0.11) benign(0.006) TCGA-CV-7095-01 11 17418492 17418492 C G ABCC8 Missense_Mutation p.V1364L 0.19 deleterious(0.04) benign(0.05) TCGA-CV-7095-01 11 18456337 18456337 C T LDHC Missense_Mutation p.R157C 0.33 tolerated(0.09) probably_damaging(0.964) TCGA-CV-7095-01 11 26353783 26353783 C T ANO3 5'UTR 0.27 TCGA-CV-7095-01 11 27679532 27679532 C T BDNF Missense_Mutation p.E276K 0.26 tolerated(0.09) possibly_damaging(0.89) TCGA-CV-7095-01 11 31531473 31531473 T C ELP4 Missense_Mutation p.S48P 0.28 deleterious(0.04) probably_damaging(0.953) TCGA-CV-7095-01 11 36472865 36472865 C G PRR5L Nonsense_Mutation p.S231* 0.25 TCGA-CV-7095-01 11 45926322 45926322 C G MAPK8IP1 Silent p.V610V 0.24 TCGA-CV-7095-01 11 47297650 47297650 C T MADD Missense_Mutation p.P287L 0.26 tolerated(0.05) possibly_damaging(0.593) TCGA-CV-7095-01 11 49229949 49229949 G A FOLH1 Missense_Mutation p.L5F 0.25 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-CV-7095-01 11 49831788 49831788 C T RP11-707M1.1 RNA 0.08 TCGA-CV-7095-01 11 59631479 59631479 C T TCN1 Missense_Mutation p.A54T 0.22 tolerated(0.61) benign(0.026) TCGA-CV-7095-01 11 61188974 61188974 G C CPSF7 Missense_Mutation p.P97R 0.18 tolerated(0.12) possibly_damaging(0.494) TCGA-CV-7095-01 11 6431880 6431880 G C APBB1 Missense_Mutation p.S233C 0.17 deleterious(0) probably_damaging(0.927) TCGA-CV-7095-01 11 64525340 64525340 C G PYGM Missense_Mutation p.E191Q 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7095-01 11 66488701 66488701 G A SPTBN2 Missense_Mutation p.T4M 0.13 tolerated(0.3) benign(0.036) TCGA-CV-7095-01 11 67077772 67077772 G T SSH3 Nonsense_Mutation p.E549* 0.06 TCGA-CV-7095-01 11 67267280 67267280 T C PITPNM1 Missense_Mutation p.E362G 0.07 deleterious(0.01) benign(0.078) TCGA-CV-7095-01 11 67816564 67816564 C T TCIRG1 Missense_Mutation p.H564Y 0.08 tolerated(0.71) benign(0.012) TCGA-CV-7095-01 11 7024071 7024071 T C ZNF214 5'UTR 0.25 TCGA-CV-7095-01 11 8736175 8736175 C T ST5 Missense_Mutation p.E642K 0.17 deleterious(0.02) benign(0.16) TCGA-CV-7095-01 12 109673414 109673414 G C ACACB Missense_Mutation p.E1470Q 0.36 tolerated(0.54) possibly_damaging(0.644) TCGA-CV-7095-01 12 110370745 110370745 A - GIT2 3'UTR 0.24 TCGA-CV-7095-01 12 110968560 110968560 T A RAD9B Intron 0.18 TCGA-CV-7095-01 12 11150362 11150362 C T TAS2R20 Missense_Mutation p.R38K 0.33 tolerated(0.19) benign(0.173) TCGA-CV-7095-01 12 11183044 11183044 C G TAS2R31 Silent p.V297V 0.19 TCGA-CV-7095-01 12 113496163 113496163 G A DTX1 Missense_Mutation p.A56T 0.27 tolerated(0.17) benign(0.305) TCGA-CV-7095-01 12 117013807 117013807 C G MAP1LC3B2 Silent p.V20V 0.15 TCGA-CV-7095-01 12 124333280 124333280 G A DNAH10 Missense_Mutation p.V1867M 0.13 benign(0.028) TCGA-CV-7095-01 12 124496647 124496647 C A ZNF664 5'UTR 0.20 TCGA-CV-7095-01 12 18889205 18889205 C G PLCZ1 Missense_Mutation p.E29Q 0.21 tolerated(0.11) possibly_damaging(0.704) TCGA-CV-7095-01 12 48477537 48477537 G C SENP1 Nonsense_Mutation p.S130* 0.22 TCGA-CV-7095-01 12 51864173 51864173 C G SLC4A8 Intron 0.21 TCGA-CV-7095-01 12 54975892 54975892 G A PPP1R1A Missense_Mutation p.H91Y 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-CV-7095-01 12 57538855 57538855 G A LRP1 Silent p.P183P 0.33 TCGA-CV-7095-01 12 58145367 58145369 CCT - CDK4 In_Frame_Del p.G48del 0.22 TCGA-CV-7095-01 12 66990676 66990676 C T GRIP1 Silent p.Q29Q 0.24 TCGA-CV-7095-01 12 7842822 7842822 C G GDF3 Missense_Mutation p.R249S 0.27 deleterious(0) possibly_damaging(0.743) TCGA-CV-7095-01 12 7980270 7980270 G A SLC2A14 Missense_Mutation p.R252W 0.13 tolerated(0.3) benign(0.042) TCGA-CV-7095-01 12 8082459 8082459 G A SLC2A3 Missense_Mutation p.R228W 0.11 tolerated(0.27) benign(0.003) TCGA-CV-7095-01 12 94975422 94975422 T A TMCC3 Missense_Mutation p.Q324L 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-CV-7095-01 13 103338495 103338495 G A METTL21C Silent p.F227F 0.20 TCGA-CV-7095-01 13 23913048 23913048 A C SACS Missense_Mutation p.V1656G 0.29 benign(0.103) TCGA-CV-7095-01 13 33590903 33590903 C G KL Missense_Mutation p.L109V 0.14 tolerated(0.52) benign(0.003) TCGA-CV-7095-01 13 99092944 99092944 G A FARP1 Missense_Mutation p.A884T 0.09 tolerated(0.45) benign(0.001) TCGA-CV-7095-01 14 101201194 101201194 G A DLK1 Missense_Mutation p.M371I 0.27 deleterious(0.03) benign(0.013) TCGA-CV-7095-01 14 101351142 101351142 G C RTL1 5'UTR 0.39 TCGA-CV-7095-01 14 19378131 19378131 C G OR11H12 Missense_Mutation p.Q180E 0.08 deleterious(0) possibly_damaging(0.595) TCGA-CV-7095-01 14 31348691 31348691 G C COCH Missense_Mutation p.G146R 0.13 deleterious(0.01) benign(0.006) TCGA-CV-7095-01 14 51224285 51224285 G A NIN Silent p.L1155L 0.10 TCGA-CV-7095-01 14 60976681 60976681 A T SIX6 Nonsense_Mutation p.K189* 0.33 TCGA-CV-7095-01 14 72055505 72055505 G C SIPA1L1 Missense_Mutation p.E306Q 0.20 tolerated(0.25) benign(0.398) TCGA-CV-7095-01 14 77732550 77732550 C T NGB 3'UTR 0.32 TCGA-CV-7095-01 14 92461767 92461767 G A TRIP11 Missense_Mutation p.S1662F 0.48 deleterious(0.02) probably_damaging(0.976) TCGA-CV-7095-01 15 23932088 23932088 G A NDN Missense_Mutation p.P93S 0.22 tolerated(0.43) possibly_damaging(0.82) TCGA-CV-7095-01 15 34649168 34649168 G T NUTM1 Missense_Mutation p.G959W 0.36 tolerated(0.2) probably_damaging(0.988) TCGA-CV-7095-01 15 43820775 43820775 C - MAP1A Frame_Shift_Del p.P2370Qfs*84 0.19 TCGA-CV-7095-01 15 50774167 50774167 G C USP8 Missense_Mutation p.D570H 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7095-01 15 50791262 50791262 C T USP8 Nonsense_Mutation p.R1112* 0.25 TCGA-CV-7095-01 15 54916087 54916087 G T UNC13C Missense_Mutation p.K2098N 0.29 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-CV-7095-01 15 56207863 56207863 G A NEDD4 Silent p.D389D 0.29 TCGA-CV-7095-01 15 66782908 66782908 C T MAP2K1 Silent p.I379I 0.33 TCGA-CV-7095-01 15 74559050 74559050 G A CCDC33 Silent p.K117K 0.20 TCGA-CV-7095-01 15 76467994 76467994 G A C15orf27 Silent p.T249T 0.21 TCGA-CV-7095-01 15 79067056 79067056 G A ADAMTS7 Missense_Mutation p.R596C 0.18 deleterious(0.03) possibly_damaging(0.696) TCGA-CV-7095-01 15 83335612 83335612 C T AP3B2 Missense_Mutation p.R580H 0.20 deleterious(0) probably_damaging(0.991) TCGA-CV-7095-01 16 1306640 1306640 C T TPSD1 Missense_Mutation p.S69F 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-CV-7095-01 16 15832485 15832485 C T MYH11 Missense_Mutation p.E1027K 0.13 probably_damaging(0.993) TCGA-CV-7095-01 16 1812845 1812845 G A MAPK8IP3 Missense_Mutation p.R578H 0.28 deleterious(0) probably_damaging(0.989) TCGA-CV-7095-01 16 20981224 20981224 G A DNAH3 Missense_Mutation p.S2783L 0.29 deleterious(0) benign(0.311) TCGA-CV-7095-01 16 2757382 2757382 G C KCTD5 3'UTR 0.26 TCGA-CV-7095-01 16 28948971 28948971 G A CD19 Missense_Mutation p.E467K 0.34 deleterious(0.01) probably_damaging(0.953) TCGA-CV-7095-01 16 29918300 29918300 C T KCTD13 Missense_Mutation p.G295R 0.29 tolerated(0.21) benign(0.004) TCGA-CV-7095-01 16 3777767 3777767 G A CREBBP Silent p.V2427V 0.22 TCGA-CV-7095-01 16 46741676 46741676 C T MYLK3 Splice_Site p.X801_splice 0.19 TCGA-CV-7095-01 16 51174819 51174819 C T SALL1 Silent p.A438A 0.26 TCGA-CV-7095-01 16 66597116 66597116 G A CKLF Missense_Mutation p.G110E 0.19 deleterious(0) probably_damaging(0.995) TCGA-CV-7095-01 16 66766353 66766353 G C DYNC1LI2 Nonsense_Mutation p.S273* 0.38 TCGA-CV-7095-01 16 67979293 67979293 C G SLC12A4 Missense_Mutation p.R1006P 0.32 deleterious(0.01) possibly_damaging(0.737) TCGA-CV-7095-01 16 68344297 68344297 A G SLC7A6OS Silent p.L138L 0.43 TCGA-CV-7095-01 16 9857127 9857127 G C GRIN2A Missense_Mutation p.S1425W 0.31 deleterious(0.01) probably_damaging(0.935) TCGA-CV-7095-01 17 10547749 10547749 G A MYH3 Silent p.R443R 0.24 TCGA-CV-7095-01 17 12642624 12642624 A T MYOCD Silent p.I232I 0.45 TCGA-CV-7095-01 17 1303386 1303386 G C YWHAE Missense_Mutation p.L7V 0.17 tolerated_low_confidence(0.49) benign(0.074) TCGA-CV-7095-01 17 21318895 21318895 C T KCNJ12 Missense_Mutation p.R81W 0.09 deleterious(0) probably_damaging(0.998) TCGA-CV-7095-01 17 2298449 2298449 C T MNT Missense_Mutation p.G125S 0.36 tolerated(1) benign(0.004) TCGA-CV-7095-01 17 25628934 25628934 G T WSB1 Missense_Mutation p.G54V 0.14 deleterious(0) probably_damaging(0.999) TCGA-CV-7095-01 17 3385074 3385074 G C ASPA Missense_Mutation p.Q138H 0.11 tolerated(1) probably_damaging(1) TCGA-CV-7095-01 17 38991082 38991082 C T TMEM99 Missense_Mutation p.S105L 0.32 tolerated_low_confidence(0.42) benign(0) TCGA-CV-7095-01 17 39579981 39579981 G C KRT37 Intron 0.12 TCGA-CV-7095-01 17 43483053 43483053 C A ARHGAP27 Missense_Mutation p.G11W 0.09 deleterious(0.02) benign(0.371) TCGA-CV-7095-01 17 56643174 56643174 G T TEX14 Missense_Mutation p.Q1346K 0.24 deleterious(0.05) benign(0.027) TCGA-CV-7095-01 17 57970536 57970536 G C RPS6KB1 5'UTR 0.60 TCGA-CV-7095-01 17 6373604 6373604 G A PITPNM3 Silent p.D583D 0.24 TCGA-CV-7095-01 17 73049121 73049121 A T KCTD2 Missense_Mutation p.E154V 0.49 deleterious(0) probably_damaging(0.996) TCGA-CV-7095-01 17 7329885 7329885 C T C17orf74 Missense_Mutation p.P192L 0.17 tolerated(0.16) benign(0.026) TCGA-CV-7095-01 17 7330746 7330746 C T C17orf74 Missense_Mutation p.S479L 0.29 deleterious(0) possibly_damaging(0.765) TCGA-CV-7095-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.21 TCGA-CV-7095-01 17 7696466 7696466 C T DNAH2 Silent p.L2504L 0.19 TCGA-CV-7095-01 17 76991155 76991155 C T CANT1 Silent p.E260E 0.32 TCGA-CV-7095-01 17 79673961 79673961 C T SLC25A10 Missense_Mutation p.A124V 0.57 deleterious_low_confidence(0) benign(0) TCGA-CV-7095-01 17 8021162 8021162 C T ALOXE3 Silent p.S181S 0.12 TCGA-CV-7095-01 17 9545105 9545105 C G WDR16 Missense_Mutation p.S547W 0.21 deleterious(0) probably_damaging(0.983) TCGA-CV-7095-01 18 22806343 22806343 G C ZNF521 Missense_Mutation p.F513L 0.28 tolerated(0.14) probably_damaging(0.996) TCGA-CV-7095-01 18 335145 335145 C A COLEC12 Missense_Mutation p.E471D 0.24 tolerated(0.88) unknown(0) TCGA-CV-7095-01 18 47810844 47810844 G A CXXC1 Missense_Mutation p.A374V 0.10 tolerated(0.17) benign(0.064) TCGA-CV-7095-01 18 48447048 48447048 C G ME2 Missense_Mutation p.L288V 0.44 tolerated(1) possibly_damaging(0.775) TCGA-CV-7095-01 18 55143901 55143901 C T ONECUT2 Silent p.D487D 0.17 TCGA-CV-7095-01 18 67365664 67365664 C G DOK6 Missense_Mutation p.P145R 0.22 deleterious(0) possibly_damaging(0.647) TCGA-CV-7095-01 19 12541320 12541320 C T ZNF443 Missense_Mutation p.G556R 0.18 tolerated(0.08) probably_damaging(0.991) TCGA-CV-7095-01 19 14070284 14070284 G A DCAF15 Silent p.P404P 0.32 TCGA-CV-7095-01 19 15276316 15276316 C T NOTCH3 Missense_Mutation p.R1893Q 0.19 deleterious(0) possibly_damaging(0.621) TCGA-CV-7095-01 19 33870422 33870422 A T CEBPG Nonsense_Mutation p.R93* 0.43 TCGA-CV-7095-01 19 38591744 38591744 C G SIPA1L3 Missense_Mutation p.S636C 0.21 deleterious(0) probably_damaging(0.957) TCGA-CV-7095-01 19 3924654 3924654 C T ATCAY 3'UTR 0.29 TCGA-CV-7095-01 19 42912238 42912238 A G LIPE Missense_Mutation p.F516L 0.16 tolerated(0.06) benign(0.38) TCGA-CV-7095-01 19 49636571 49636571 G A PPFIA3 Silent p.A368A 0.15 TCGA-CV-7095-01 19 50925756 50925756 G A SPIB Silent p.L26L 0.41 TCGA-CV-7095-01 19 51994964 51994964 C T SIGLEC12 Silent p.A573A 0.09 TCGA-CV-7095-01 19 52497522 52497522 G A ZNF615 Silent p.F280F 0.10 TCGA-CV-7095-01 19 53303120 53303120 C G ZNF28 Missense_Mutation p.E660Q 0.10 deleterious(0.03) benign(0.291) TCGA-CV-7095-01 19 53612314 53612314 G T ZNF415 Nonsense_Mutation p.Y328* 0.49 TCGA-CV-7095-01 19 53912281 53912281 G A ZNF765 Silent p.Q491Q 0.12 TCGA-CV-7095-01 19 5785684 5785684 A T DUS3L Missense_Mutation p.W561R 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-7095-01 19 6495873 6495873 G A TUBB4A Missense_Mutation p.R213C 0.22 deleterious_low_confidence(0.01) benign(0.045) TCGA-CV-7095-01 19 7708073 7708073 C G STXBP2 Missense_Mutation p.A350G 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7095-01 1 10384836 10384836 G A KIF1B Missense_Mutation p.R807Q 0.27 tolerated(0.05) probably_damaging(0.984) TCGA-CV-7095-01 1 120057080 120057080 C T HSD3B1 Nonsense_Mutation p.R312* 0.24 TCGA-CV-7095-01 1 144994773 144994773 C T PDE4DIP 5'UTR 0.10 TCGA-CV-7095-01 1 150900253 150900253 G A SETDB1 Silent p.E21E 0.15 TCGA-CV-7095-01 1 151115104 151115104 C T SEMA6C 5'UTR 0.29 TCGA-CV-7095-01 1 152279854 152279854 G A FLG Missense_Mutation p.A2503V 0.34 probably_damaging(0.986) TCGA-CV-7095-01 1 158450344 158450344 T C OR10R2 Missense_Mutation p.V226A 0.25 tolerated(0.13) benign(0.181) TCGA-CV-7095-01 1 176564443 176564443 G A PAPPA2 Missense_Mutation p.S568N 0.20 tolerated(0.1) benign(0.01) TCGA-CV-7095-01 1 179989427 179989427 G C CEP350 Missense_Mutation p.E840Q 0.25 probably_damaging(0.999) TCGA-CV-7095-01 1 180471273 180471273 G A ACBD6 Silent p.A43A 0.22 TCGA-CV-7095-01 1 183938459 183938459 T G COLGALT2 Missense_Mutation p.D259A 0.25 deleterious(0) benign(0.155) TCGA-CV-7095-01 1 197024886 197024886 C T F13B Missense_Mutation p.R438H 0.18 tolerated(0.77) benign(0.004) TCGA-CV-7095-01 1 205039107 205039107 C A CNTN2 Silent p.P783P 0.20 TCGA-CV-7095-01 1 2160913 2160913 C T SKI Silent p.L236L 0.36 TCGA-CV-7095-01 1 228459794 228459794 C T OBSCN Missense_Mutation p.S1953L 0.15 probably_damaging(0.991) TCGA-CV-7095-01 1 228495827 228495827 T C OBSCN Missense_Mutation p.I5118T 0.16 probably_damaging(0.991) TCGA-CV-7095-01 1 234745081 234745081 C A IRF2BP2 Nonsense_Mutation p.E54* 0.45 TCGA-CV-7095-01 1 235295270 235295270 C G RBM34 Missense_Mutation p.E351Q 0.21 tolerated(0.06) possibly_damaging(0.771) TCGA-CV-7095-01 1 245772637 245772637 C G KIF26B Missense_Mutation p.S574C 0.29 deleterious(0.01) unknown(0) TCGA-CV-7095-01 1 27332876 27332876 G A FAM46B Silent p.L279L 0.34 TCGA-CV-7095-01 1 28099805 28099805 C T STX12 5'UTR 0.30 TCGA-CV-7095-01 1 36031042 36031042 C T NCDN Silent p.P656P 0.33 TCGA-CV-7095-01 1 50610702 50610702 A G ELAVL4 Missense_Mutation p.N45S 0.32 tolerated(0.4) benign(0.009) TCGA-CV-7095-01 1 59812064 59812064 G C FGGY Silent p.L153L 0.30 TCGA-CV-7095-01 1 66101886 66101886 G C LEPR Missense_Mutation p.E896Q 0.22 deleterious(0) possibly_damaging(0.835) TCGA-CV-7095-01 20 17475534 17475534 C G BFSP1 Missense_Mutation p.E395Q 0.39 tolerated(0.1) benign(0.045) TCGA-CV-7095-01 20 31590695 31590695 C T SUN5 Silent p.R36R 0.27 TCGA-CV-7095-01 20 31606867 31606867 G A BPIFB2 Splice_Site p.X286_splice 0.34 TCGA-CV-7095-01 20 3669239 3669239 C T SIGLEC1 Missense_Mutation p.E1700K 0.21 tolerated_low_confidence(0.24) benign(0.005) TCGA-CV-7095-01 20 52609131 52609131 T A BCAS1 Intron 0.18 TCGA-CV-7095-01 20 60835072 60835072 G A OSBPL2 Missense_Mutation p.E25K 0.30 tolerated(0.09) possibly_damaging(0.818) TCGA-CV-7095-01 20 61873937 61873937 G A NKAIN4 Missense_Mutation p.H191Y 0.24 tolerated(0.05) possibly_damaging(0.825) TCGA-CV-7095-01 21 33057747 33057747 G A SCAF4 Missense_Mutation p.P754S 0.18 unknown(0) TCGA-CV-7095-01 21 46011649 46011649 A C KRTAP10-6 Missense_Mutation p.C239W 0.26 deleterious(0) unknown(0) TCGA-CV-7095-01 21 46957703 46957703 C T SLC19A1 Silent p.K57K 0.54 TCGA-CV-7095-01 21 47697544 47697544 G A MCM3AP Silent p.L585L 0.10 TCGA-CV-7095-01 22 17662734 17662734 T A CECR1 Missense_Mutation p.K473I 0.35 deleterious(0) probably_damaging(1) TCGA-CV-7095-01 22 39883764 39883764 G A MGAT3 Missense_Mutation p.E138K 0.27 tolerated_low_confidence(0.43) benign(0.074) TCGA-CV-7095-01 22 40815316 40815316 G A MKL1 Missense_Mutation p.R376C 0.24 deleterious(0) possibly_damaging(0.664) TCGA-CV-7095-01 22 41573028 41573028 C A EP300 Nonsense_Mutation p.C1771* 0.18 TCGA-CV-7095-01 22 42033722 42033722 G C XRCC6 Missense_Mutation p.E234Q 0.13 deleterious(0.04) benign(0.09) TCGA-CV-7095-01 22 46751462 46751462 G C TRMU Missense_Mutation p.R332P 0.35 deleterious(0.01) possibly_damaging(0.597) TCGA-CV-7095-01 22 46752850 46752850 G A TRMU Missense_Mutation p.E405K 0.28 tolerated_low_confidence(0.5) benign(0.001) TCGA-CV-7095-01 2 100916183 100916183 C T LONRF2 Silent p.K421K 0.23 TCGA-CV-7095-01 2 108608589 108608589 A G SLC5A7 Missense_Mutation p.N69S 0.39 deleterious(0.03) possibly_damaging(0.549) TCGA-CV-7095-01 2 11389837 11389837 A - ROCK2 Frame_Shift_Del p.W138Gfs*31 0.21 TCGA-CV-7095-01 2 118758500 118758500 G C CCDC93 Nonsense_Mutation p.S87* 0.36 TCGA-CV-7095-01 2 128412466 128412466 T C LIMS2 Missense_Mutation p.E83G 0.12 deleterious(0) probably_damaging(0.997) TCGA-CV-7095-01 2 158390507 158390507 C T ACVR1C Missense_Mutation p.G469R 0.13 deleterious(0) probably_damaging(0.966) TCGA-CV-7095-01 2 160086120 160086120 G A TANC1 Missense_Mutation p.E1395K 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-7095-01 2 169417810 169417810 C G CERS6 Missense_Mutation p.L129V 0.13 tolerated(0.16) possibly_damaging(0.452) TCGA-CV-7095-01 2 172314572 172314572 C A DCAF17 Missense_Mutation p.T240N 0.26 tolerated(0.56) benign(0.081) TCGA-CV-7095-01 2 179474959 179474959 C T TTN Missense_Mutation p.M17098I 0.45 TCGA-CV-7095-01 2 179616442 179616442 G A TTN Intron 0.29 TCGA-CV-7095-01 2 189864617 189864617 C G COL3A1 Missense_Mutation p.P760R 0.12 unknown(0) TCGA-CV-7095-01 2 190660652 190660653 - G PMS1 Frame_Shift_Ins p.S99Vfs*7 0.24 TCGA-CV-7095-01 2 202149644 202149644 A T CASP8 Missense_Mutation p.D362V 0.49 deleterious(0) probably_damaging(0.978) TCGA-CV-7095-01 2 202509913 202509913 C G MPP4 3'UTR 0.15 TCGA-CV-7095-01 2 217124226 217124226 C A MARCH4 Nonsense_Mutation p.E348* 0.41 TCGA-CV-7095-01 2 27601470 27601470 C T ZNF513 Silent p.L221L 0.25 TCGA-CV-7095-01 2 32724766 32724766 C G BIRC6 Nonsense_Mutation p.S2874* 0.27 TCGA-CV-7095-01 2 3749215 3749215 C T ALLC Missense_Mutation p.P322S 0.32 tolerated(0.12) benign(0.262) TCGA-CV-7095-01 2 37571843 37571843 C G QPCT 5'UTR 0.31 TCGA-CV-7095-01 2 86267597 86267597 C T POLR1A Missense_Mutation p.G1220R 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7095-01 3 122420364 122420364 C T PARP14 Missense_Mutation p.P988L 0.19 tolerated(0.33) benign(0) TCGA-CV-7095-01 3 125694519 125694519 C G ROPN1B Missense_Mutation p.S77C 0.27 deleterious(0.03) benign(0.038) TCGA-CV-7095-01 3 126733043 126733043 C T PLXNA1 Missense_Mutation p.P810L 0.19 tolerated(0.36) benign(0.053) TCGA-CV-7095-01 3 130744130 130744130 C G ASTE1 Missense_Mutation p.M7I 0.28 deleterious(0.02) possibly_damaging(0.877) TCGA-CV-7095-01 3 148712030 148712030 G A GYG1 Missense_Mutation p.V37M 0.23 deleterious(0) possibly_damaging(0.75) TCGA-CV-7095-01 3 169814872 169814872 G C PHC3 3'UTR 0.28 TCGA-CV-7095-01 3 183551318 183551318 A - PARL Frame_Shift_Del p.F330Lfs*23 0.23 TCGA-CV-7095-01 3 183994461 183994461 C T ECE2 Intron 0.38 TCGA-CV-7095-01 3 19295208 19295208 G A KCNH8 Missense_Mutation p.D47N 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-7095-01 3 45804560 45804560 C G SLC6A20 Silent p.L436L 0.20 TCGA-CV-7095-01 3 53757958 53757958 T A CACNA1D Missense_Mutation p.F698I 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-CV-7095-01 4 106600660 106600660 C T ARHGEF38 3'UTR 0.28 TCGA-CV-7095-01 4 130023861 130023861 G A C4orf33 Missense_Mutation p.M32I 0.21 tolerated(0.16) benign(0.099) TCGA-CV-7095-01 4 153332853 153332853 G A FBXW7 Missense_Mutation p.R35C 0.34 deleterious_low_confidence(0) unknown(0) TCGA-CV-7095-01 4 187539252 187539252 G A FAT1 Nonsense_Mutation p.Q2830* 0.33 TCGA-CV-7095-01 4 4199228 4199228 C G OTOP1 Missense_Mutation p.E445Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-7095-01 4 66356413 66356413 G C EPHA5 Missense_Mutation p.R362G 0.25 deleterious(0.03) possibly_damaging(0.695) TCGA-CV-7095-01 4 77675521 77675521 C T SHROOM3 Silent p.L1295L 0.23 TCGA-CV-7095-01 4 79403007 79403007 C T FRAS1 Silent p.F2831F 0.26 TCGA-CV-7095-01 4 91230090 91230090 A G CCSER1 Missense_Mutation p.R219G 0.27 tolerated(0.39) benign(0.004) TCGA-CV-7095-01 4 959304 959304 G A DGKQ Silent p.S531S 0.19 TCGA-CV-7095-01 4 995557 995557 C G IDUA Missense_Mutation p.T227S 0.15 tolerated(0.34) benign(0.015) TCGA-CV-7095-01 5 121761101 121761101 C G SNCAIP Missense_Mutation p.L353V 0.50 deleterious(0.03) probably_damaging(0.997) TCGA-CV-7095-01 5 140476460 140476460 T C PCDHB2 Silent p.L696L 0.23 TCGA-CV-7095-01 5 140482313 140482313 T C PCDHB3 Silent p.L694L 0.16 TCGA-CV-7095-01 5 14406048 14406048 A G TRIO Missense_Mutation p.E1603G 0.29 benign(0.374) TCGA-CV-7095-01 5 150276445 150276445 C T ZNF300 Missense_Mutation p.G135D 0.52 tolerated(1) benign(0.004) TCGA-CV-7095-01 5 16465329 16465329 G A ZNF622 Missense_Mutation p.P149L 0.42 tolerated(0.64) benign(0.001) TCGA-CV-7095-01 5 180047255 180047255 C A FLT4 Silent p.G820G 0.51 TCGA-CV-7095-01 5 3600291 3600291 C G IRX1 Missense_Mutation p.P410R 0.16 tolerated(0.61) benign(0.445) TCGA-CV-7095-01 5 36265595 36265595 G C RANBP3L Nonsense_Mutation p.S124* 0.16 TCGA-CV-7095-01 5 37048678 37048678 G C NIPBL Missense_Mutation p.D2222H 0.25 deleterious(0.01) probably_damaging(0.962) TCGA-CV-7095-01 5 41143093 41143093 C G C6 Missense_Mutation p.C880S 0.18 deleterious(0) probably_damaging(0.922) TCGA-CV-7095-01 5 52351412 52351412 C T ITGA2 Missense_Mutation p.T275M 0.20 deleterious(0.01) probably_damaging(0.911) TCGA-CV-7095-01 6 112465999 112465999 G C LAMA4 Missense_Mutation p.S830R 0.20 tolerated(0.26) probably_damaging(0.974) TCGA-CV-7095-01 6 129635848 129635848 G A LAMA2 Missense_Mutation p.G1154R 0.18 deleterious(0) probably_damaging(1) TCGA-CV-7095-01 6 136582563 136582563 C T BCLAF1 Missense_Mutation p.R866H 0.09 deleterious(0.01) possibly_damaging(0.715) TCGA-CV-7095-01 6 146245960 146245960 T A SHPRH Missense_Mutation p.Y1106F 0.27 deleterious(0) probably_damaging(0.925) TCGA-CV-7095-01 6 152763311 152763311 C T SYNE1 Missense_Mutation p.E1303K 0.23 benign(0.113) TCGA-CV-7095-01 6 29274980 29274980 A G OR14J1 Missense_Mutation p.I172V 0.32 tolerated(0.55) benign(0.084) TCGA-CV-7095-01 6 29796372 29796372 C T HLA-G Silent p.R132R 0.22 TCGA-CV-7095-01 6 30154334 30154334 C T TRIM26 Silent p.V313V 0.26 TCGA-CV-7095-01 6 32137994 32137994 C G AGPAT1 Missense_Mutation p.G185A 0.35 deleterious(0) possibly_damaging(0.475) TCGA-CV-7095-01 6 37411845 37411845 C T CMTR1 Silent p.D68D 0.43 TCGA-CV-7095-01 6 43214425 43214425 G A TTBK1 Silent p.K9K 0.22 TCGA-CV-7095-01 6 66204916 66204916 G T EYS Missense_Mutation p.L130I 0.31 tolerated_low_confidence(0.21) probably_damaging(0.953) TCGA-CV-7095-01 6 73951181 73951181 G C KHDC1 3'UTR 0.19 TCGA-CV-7095-01 6 79655871 79655871 G C PHIP Missense_Mutation p.Q1493E 0.07 tolerated_low_confidence(0.31) benign(0.138) TCGA-CV-7095-01 7 1026752 1026752 C T CYP2W1 Missense_Mutation p.P277S 0.36 tolerated(0.84) benign(0.034) TCGA-CV-7095-01 7 105098338 105098338 G C PUS7 Missense_Mutation p.L629V 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7095-01 7 107204296 107204296 G C COG5 Missense_Mutation p.R47G 0.37 tolerated_low_confidence(0.44) benign(0.027) TCGA-CV-7095-01 7 107398754 107398754 G A CBLL1 Missense_Mutation p.E203K 0.31 tolerated(0.13) benign(0.256) TCGA-CV-7095-01 7 117432019 117432019 G C CTTNBP2 Missense_Mutation p.Q411E 0.22 tolerated(0.45) benign(0.044) TCGA-CV-7095-01 7 122635216 122635216 T C TAS2R16 Missense_Mutation p.E158G 0.20 tolerated(0.39) benign(0.007) TCGA-CV-7095-01 7 139796488 139796488 G A KDM7A Silent p.S747S 0.26 TCGA-CV-7095-01 7 141619579 141619579 C T OR9A4 Missense_Mutation p.R302W 0.22 deleterious(0.04) benign(0.021) TCGA-CV-7095-01 7 142566409 142566409 G A EPHB6 Missense_Mutation p.R733Q 0.35 deleterious(0) benign(0.191) TCGA-CV-7095-01 7 147336299 147336299 G A CNTNAP2 Missense_Mutation p.A667T 0.27 tolerated(0.08) benign(0.177) TCGA-CV-7095-01 7 148288041 148288041 C G C7orf33 Silent p.L8L 0.12 TCGA-CV-7095-01 7 21646281 21646281 T C DNAH11 Missense_Mutation p.F1261S 0.20 probably_damaging(0.984) TCGA-CV-7095-01 7 4856042 4856042 G A RADIL Missense_Mutation p.R595C 0.19 tolerated(0.21) benign(0.002) TCGA-CV-7095-01 7 82579179 82579179 T A PCLO Silent p.T3575T 0.27 TCGA-CV-7095-01 7 83032042 83032042 C A SEMA3E Missense_Mutation p.R350L 0.23 deleterious(0.01) probably_damaging(1) TCGA-CV-7095-01 7 97832936 97832936 G A LMTK2 Silent p.P1386P 0.28 TCGA-CV-7095-01 7 97935815 97935815 G A BAIAP2L1 Missense_Mutation p.P393S 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7095-01 7 99017073 99017073 C T BUD31 3'UTR 0.21 TCGA-CV-7095-01 8 121290786 121290786 G C COL14A1 Silent p.V1150V 0.50 TCGA-CV-7095-01 8 139263255 139263255 A C FAM135B Missense_Mutation p.L124W 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-CV-7095-01 8 144998292 144998292 C T PLEC Silent p.E2072E 0.34 TCGA-CV-7095-01 8 35583721 35583721 G A UNC5D Missense_Mutation p.R452Q 0.48 tolerated(0.32) benign(0.134) TCGA-CV-7095-01 8 36671785 36671785 G A KCNU1 Missense_Mutation p.E265K 0.47 tolerated(0.14) possibly_damaging(0.513) TCGA-CV-7095-01 8 38810819 38810819 G T PLEKHA2 Missense_Mutation p.R236L 0.28 deleterious(0) possibly_damaging(0.753) TCGA-CV-7095-01 8 55372674 55372674 G T SOX17 3'UTR 0.31 TCGA-CV-7095-01 8 68334861 68334861 C T CPA6 Missense_Mutation p.E398K 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-7095-01 8 74903673 74903673 G C LY96 5'UTR 0.35 TCGA-CV-7095-01 9 112899295 112899295 G C PALM2-AKAP2 Missense_Mutation p.E491Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-CV-7095-01 9 116028637 116028637 A G SLC31A1 3'Flank 0.44 TCGA-CV-7095-01 9 116154604 116154604 C T ALAD Intron 0.17 TCGA-CV-7095-01 9 116823771 116823771 G A AMBP Silent p.G262G 0.21 TCGA-CV-7095-01 9 117266938 117266938 C T DFNB31 Silent p.A48A 0.19 TCGA-CV-7095-01 9 125861042 125861042 A T RABGAP1 Nonsense_Mutation p.K928* 0.24 TCGA-CV-7095-01 9 130206706 130206706 C T ZNF79 Missense_Mutation p.H243Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-7095-01 9 135984211 135984211 C T RALGDS Silent p.S209S 0.13 TCGA-CV-7095-01 9 139636330 139636330 C T LCN10 Intron 0.57 TCGA-CV-7095-01 9 14848678 14848678 C A FREM1 Missense_Mutation p.V416L 0.31 deleterious(0) probably_damaging(0.925) TCGA-CV-7095-01 9 35385812 35385812 T C UNC13B Splice_Site p.X906_splice 0.21 TCGA-CV-7095-01 9 35403456 35403456 C T UNC13B Silent p.L1450L 0.36 TCGA-CV-7095-01 9 35750328 35750328 C A RGP1 Missense_Mutation p.Q69K 0.28 tolerated(1) benign(0.006) TCGA-CV-7095-01 9 3937164 3937164 G A GLIS3 Missense_Mutation p.S579L 0.11 deleterious(0) probably_damaging(0.997) TCGA-CV-7095-01 9 74764406 74764406 G C GDA 5'UTR 0.42 TCGA-CV-7095-01 9 79910535 79910535 T G VPS13A Silent p.T1195T 0.15 TCGA-CV-7095-01 9 88307677 88307677 G C AGTPBP1 Missense_Mutation p.I28M 0.19 tolerated(0.33) benign(0.023) TCGA-CV-7095-01 X 134494925 134494925 C T ZNF449 Missense_Mutation p.T494I 0.42 deleterious(0.03) benign(0.102) TCGA-CV-7095-01 X 140995473 140995473 G A MAGEC1 Silent p.E761E 0.25 TCGA-CV-7095-01 X 153880412 153880412 C T CTAG2 3'UTR 0.27 TCGA-CV-7095-01 X 31986549 31986549 G C DMD Nonsense_Mutation p.S2174* 0.22 TCGA-CV-7095-01 X 3241681 3241681 C T MXRA5 Missense_Mutation p.R682H 0.28 tolerated(0.21) benign(0.019) TCGA-CV-7095-01 X 47486681 47486681 A G CFP Missense_Mutation p.C209R 0.17 deleterious(0) probably_damaging(0.994) TCGA-CV-7095-01 X 47918145 47918145 C G ZNF630 Missense_Mutation p.Q562H 0.50 tolerated(0.05) probably_damaging(0.987) TCGA-CV-7095-01 X 48542320 48542320 C G WAS Silent p.L26L 0.25 TCGA-CV-7095-01 X 79980467 79980467 C T BRWD3 Missense_Mutation p.D496N 0.35 tolerated(0.44) benign(0.032) TCGA-CV-7095-01 X 84525039 84525039 G C ZNF711 Missense_Mutation p.R332T 0.20 tolerated(0.06) benign(0) TCGA-CV-7095-01 X 8522000 8522000 C G KAL1 Missense_Mutation p.K449N 0.17 tolerated(0.06) possibly_damaging(0.872) TCGA-CV-7097-01 10 5499022 5499022 T C NET1 3'UTR 0.10 TCGA-CV-7097-01 10 7841811 7841811 A G ATP5C1 Missense_Mutation p.I169V 0.15 tolerated(0.5) benign(0.057) TCGA-CV-7097-01 11 118107898 118107898 T C MPZL3 Silent p.V106V 0.45 TCGA-CV-7097-01 11 18158957 18158957 G A MRGPRX3 Missense_Mutation p.A70T 0.37 tolerated(0.06) benign(0.104) TCGA-CV-7097-01 11 5345445 5345445 G A OR51B2 Missense_Mutation p.P28L 0.24 deleterious(0.05) benign(0.033) TCGA-CV-7097-01 11 55653151 55653151 C T TRIM51 Missense_Mutation p.R83W 0.32 tolerated(0.9) benign(0.005) TCGA-CV-7097-01 11 55999976 55999976 G C OR5T2 Missense_Mutation p.S229C 0.27 deleterious(0) probably_damaging(0.996) TCGA-CV-7097-01 11 5809698 5809698 G C OR52N1 Missense_Mutation p.L117V 0.21 deleterious(0.01) possibly_damaging(0.786) TCGA-CV-7097-01 12 101018469 101018469 C T GAS2L3 Missense_Mutation p.P629L 0.26 tolerated(0.28) benign(0.002) TCGA-CV-7097-01 12 112165809 112165809 C G ACAD10 Missense_Mutation p.L400V 0.23 tolerated(0.32) benign(0.227) TCGA-CV-7097-01 12 113307745 113307745 G A RPH3A Missense_Mutation p.V233M 0.28 tolerated(0.27) benign(0.018) TCGA-CV-7097-01 12 124416356 124416356 G T DNAH10 Missense_Mutation p.V4246L 0.27 benign(0.012) TCGA-CV-7097-01 12 43777690 43777690 G A ADAMTS20 Nonsense_Mutation p.Q1515* 0.24 TCGA-CV-7097-01 12 53460181 53460181 C T SPRYD3 Missense_Mutation p.E371K 0.16 tolerated(0.22) benign(0.001) TCGA-CV-7097-01 12 53509227 53509227 C T SOAT2 Missense_Mutation p.A166V 0.33 tolerated(1) probably_damaging(0.933) TCGA-CV-7097-01 12 68595690 68595690 T G IL26 Missense_Mutation p.K151Q 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-CV-7097-01 12 8388253 8388253 G A RP11-266K4.9 RNA 0.23 TCGA-CV-7097-01 12 91550936 91550936 C G DCN Missense_Mutation p.G190R 0.08 deleterious(0) probably_damaging(1) TCGA-CV-7097-01 12 95645720 95645720 C A VEZT Missense_Mutation p.S14Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-CV-7097-01 14 102874944 102874944 G C TECPR2 Silent p.L156L 0.28 TCGA-CV-7097-01 14 25100270 25100270 C A GZMB 3'UTR 0.27 TCGA-CV-7097-01 14 59112758 59112758 G A DACT1 Missense_Mutation p.E473K 0.27 tolerated(0.26) probably_damaging(0.954) TCGA-CV-7097-01 14 74327274 74327274 C T PTGR2 Nonsense_Mutation p.R24* 0.36 TCGA-CV-7097-01 15 41797503 41797503 C T LTK Missense_Mutation p.G610S 0.10 tolerated_low_confidence(0.08) benign(0.133) TCGA-CV-7097-01 15 75114994 75114994 G - LMAN1L Frame_Shift_Del p.V382Sfs*18 0.12 TCGA-CV-7097-01 15 90771407 90771407 A T SEMA4B Missense_Mutation p.Q682H 0.23 tolerated(0.11) benign(0.002) TCGA-CV-7097-01 16 11016081 11016081 G A CIITA Silent p.P1069P 0.21 TCGA-CV-7097-01 16 67208838 67208838 G A NOL3 Silent p.T200T 0.40 TCGA-CV-7097-01 16 75513153 75513153 C T CHST6 Missense_Mutation p.A192T 0.21 tolerated(0.12) benign(0.013) TCGA-CV-7097-01 16 80718469 80718469 G A CDYL2 Silent p.D194D 0.21 TCGA-CV-7097-01 16 84691498 84691498 C T KLHL36 Missense_Mutation p.A362V 0.11 deleterious(0.02) possibly_damaging(0.907) TCGA-CV-7097-01 17 10440764 10440764 G C MYH2 Silent p.G561G 0.06 TCGA-CV-7097-01 17 41228515 41228515 C T BRCA1 Missense_Mutation p.G1513R 0.23 tolerated(0.16) benign(0.014) TCGA-CV-7097-01 17 61661062 61661062 G A DCAF7 Intron 0.25 TCGA-CV-7097-01 17 72341019 72341019 C T KIF19 Silent p.V234V 0.27 TCGA-CV-7097-01 18 48603080 48603080 C T SMAD4 Nonsense_Mutation p.Q461* 0.34 TCGA-CV-7097-01 19 17436103 17436103 G A ANO8 Silent p.A918A 0.32 TCGA-CV-7097-01 19 21476934 21476934 T G ZNF708 Missense_Mutation p.K278N 0.30 deleterious(0.02) possibly_damaging(0.483) TCGA-CV-7097-01 19 2214510 2214510 C T DOT1L Missense_Mutation p.T613M 0.37 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-CV-7097-01 19 23159583 23159583 A T ZNF728 Missense_Mutation p.S186T 0.23 tolerated(0.06) benign(0.212) TCGA-CV-7097-01 19 24097761 24097761 C G ZNF726 5'UTR 0.40 TCGA-CV-7097-01 19 39876966 39876966 C - PAF1 Frame_Shift_Del p.E421Rfs*137 0.13 TCGA-CV-7097-01 19 44610697 44610697 T A ZNF224 Silent p.G128G 0.14 TCGA-CV-7097-01 19 47996389 47996390 - G NAPA Frame_Shift_Ins p.E155Rfs*29 0.22 TCGA-CV-7097-01 19 53884457 53884457 C T ZNF525 Missense_Mutation p.R209C 0.30 tolerated(0.05) benign(0.292) TCGA-CV-7097-01 19 55144664 55144664 C T LILRB1 Missense_Mutation p.P386S 0.23 deleterious(0.02) benign(0.286) TCGA-CV-7097-01 1 104115755 104115755 C T AMY2B Missense_Mutation p.T129I 0.22 tolerated(0.05) benign(0.285) TCGA-CV-7097-01 1 107600207 107600207 C G PRMT6 Missense_Mutation p.I290M 0.29 tolerated(0.06) benign(0.057) TCGA-CV-7097-01 1 120050217 120050217 G A HSD3B1 Missense_Mutation p.G40R 0.25 tolerated(1) benign(0.001) TCGA-CV-7097-01 1 150795676 150795676 T C ARNT Missense_Mutation p.N463S 0.07 tolerated(0.18) benign(0.005) TCGA-CV-7097-01 1 156874633 156874633 C T PEAR1 Silent p.C65C 0.18 TCGA-CV-7097-01 1 196876014 196876014 G A CFHR4 Missense_Mutation p.E154K 0.22 tolerated(0.35) benign(0.127) TCGA-CV-7097-01 1 202249913 202249913 T G LGR6 Missense_Mutation p.L217V 0.31 deleterious(0) probably_damaging(0.999) TCGA-CV-7097-01 1 21013938 21013938 G A KIF17 Silent p.S627S 0.32 TCGA-CV-7097-01 1 211534067 211534067 T C TRAF5 Silent p.P189P 0.07 TCGA-CV-7097-01 1 247320151 247320151 C G ZNF124 Missense_Mutation p.G196A 0.30 deleterious(0) probably_damaging(0.915) TCGA-CV-7097-01 1 57257788 57257788 C T C1orf168 Missense_Mutation p.S233N 0.32 tolerated(0.1) benign(0.126) TCGA-CV-7097-01 1 67889975 67889975 T C SERBP1 Missense_Mutation p.I242M 0.30 tolerated_low_confidence(0.12) benign(0) TCGA-CV-7097-01 20 43386376 43386376 T A RIMS4 Missense_Mutation p.Q130L 0.52 deleterious_low_confidence(0) benign(0.007) TCGA-CV-7097-01 20 43945404 43945404 C A RBPJL Silent p.I453I 0.43 TCGA-CV-7097-01 20 47855521 47855530 ATGGAGAAAG - DDX27 Frame_Shift_Del p.E607Cfs*7 0.36 TCGA-CV-7097-01 20 54970581 54970581 C T CSTF1 5'UTR 0.23 TCGA-CV-7097-01 21 34958441 34958441 C T DONSON Missense_Mutation p.S150N 0.18 tolerated(0.45) benign(0.012) TCGA-CV-7097-01 21 47660924 47660924 T C MCM3AP Missense_Mutation p.I1812V 0.34 tolerated(0.59) benign(0.001) TCGA-CV-7097-01 2 164466120 164466120 G A FIGN Missense_Mutation p.S741F 0.39 deleterious(0) probably_damaging(0.985) TCGA-CV-7097-01 2 179595727 179595727 C T TTN Missense_Mutation p.D5889N 0.33 TCGA-CV-7097-01 2 186670771 186670771 G A FSIP2 Missense_Mutation p.D5669N 0.32 benign(0.001) TCGA-CV-7097-01 2 239988450 239988450 C A HDAC4 Nonsense_Mutation p.E986* 0.41 TCGA-CV-7097-01 2 242054319 242054319 C T PASK Intron 0.49 TCGA-CV-7097-01 2 24929972 24929972 A G NCOA1 Missense_Mutation p.N545D 0.17 deleterious(0.02) benign(0.031) TCGA-CV-7097-01 2 84784958 84784958 A G DNAH6 Missense_Mutation p.I568V 0.20 tolerated(0.07) benign(0.038) TCGA-CV-7097-01 3 112198458 112198458 C A BTLA Nonsense_Mutation p.E83* 0.17 TCGA-CV-7097-01 3 120998716 120998716 A G STXBP5L Missense_Mutation p.S675G 0.37 tolerated(0.09) benign(0.41) TCGA-CV-7097-01 3 129324754 129324754 C T PLXND1 Silent p.L243L 0.39 TCGA-CV-7097-01 3 131254048 131254048 T C CPNE4 Silent p.L555L 0.24 TCGA-CV-7097-01 3 171379875 171379875 T - PLD1 Frame_Shift_Del p.N772Tfs*14 0.18 TCGA-CV-7097-01 3 46062445 46062445 A G XCR1 Missense_Mutation p.F332S 0.71 deleterious(0.04) benign(0.025) TCGA-CV-7097-01 3 88040372 88040372 C T HTR1F Missense_Mutation p.P158L 0.46 deleterious(0) probably_damaging(1) TCGA-CV-7097-01 4 129776938 129776938 C T JADE1 Silent p.L284L 0.20 TCGA-CV-7097-01 4 146435852 146435852 G A SMAD1 Nonsense_Mutation p.W29* 0.07 TCGA-CV-7097-01 4 156634710 156634710 A T GUCY1A3 Missense_Mutation p.Q516L 0.14 tolerated(0.41) possibly_damaging(0.725) TCGA-CV-7097-01 4 169927998 169927998 T C CBR4 Missense_Mutation p.Q103R 0.04 deleterious(0) benign(0.319) TCGA-CV-7097-01 4 169927999 169927999 G T CBR4 Missense_Mutation p.Q103K 0.05 deleterious(0) benign(0.251) TCGA-CV-7097-01 4 169928000 169928000 A T CBR4 Silent p.S102S 0.05 TCGA-CV-7097-01 4 175162340 175162340 G T FBXO8 Silent p.I162I 0.32 TCGA-CV-7097-01 4 17609020 17609020 C G LAP3 Intron 0.31 TCGA-CV-7097-01 5 132073129 132073129 C T KIF3A 5'UTR 0.13 TCGA-CV-7097-01 5 140256564 140256564 G A PCDHA12 Missense_Mutation p.A503T 0.08 tolerated_low_confidence(0.08) benign(0.219) TCGA-CV-7097-01 5 169810824 169810824 C A KCNMB1 Silent p.L55L 0.30 TCGA-CV-7097-01 6 117237221 117237221 C A RFX6 Missense_Mutation p.D277E 0.18 deleterious(0) possibly_damaging(0.808) TCGA-CV-7097-01 6 158517350 158517350 A - SYNJ2 Frame_Shift_Del p.K1483Rfs*16 0.25 TCGA-CV-7097-01 6 166571825 166571825 G T T Missense_Mutation p.P429H 0.08 deleterious(0.02) benign(0.027) TCGA-CV-7097-01 6 30551996 30551997 - C ABCF1 Frame_Shift_Ins p.Q378Pfs*7 0.21 TCGA-CV-7097-01 6 32917064 32917064 C T HLA-DMA Silent p.R255R 0.29 TCGA-CV-7097-01 6 41309847 41309847 G A NCR2 Missense_Mutation p.V202I 0.28 tolerated(0.22) benign(0.004) TCGA-CV-7097-01 6 43305058 43305058 A G ZNF318 Silent p.D2226D 0.29 TCGA-CV-7097-01 6 656505 656505 G A HUS1B Missense_Mutation p.P147L 0.34 deleterious(0.02) benign(0.001) TCGA-CV-7097-01 6 75947582 75947582 T C COX7A2 3'UTR 0.29 TCGA-CV-7097-01 7 100677784 100677784 T C MUC17 Silent p.G1029G 0.27 TCGA-CV-7097-01 7 142569486 142569486 C T TRPV6 Missense_Mutation p.G718R 0.25 deleterious_low_confidence(0.01) benign(0.021) TCGA-CV-7097-01 7 158695196 158695196 A T WDR60 Missense_Mutation p.I423F 0.22 deleterious(0) possibly_damaging(0.507) TCGA-CV-7097-01 7 50605594 50605594 C G DDC Missense_Mutation p.L133F 0.24 deleterious(0) probably_damaging(0.989) TCGA-CV-7097-01 7 70597919 70597920 CG - WBSCR17 Frame_Shift_Del p.A46Rfs*43 0.31 TCGA-CV-7097-01 8 26236921 26236921 C T BNIP3L 5'Flank 0.36 TCGA-CV-7097-01 9 103111475 103111475 A T TEX10 Silent p.L57L 0.09 TCGA-CV-7097-01 9 123904513 123904513 A C CNTRL Silent p.R946R 0.21 TCGA-CV-7097-01 9 131233667 131233667 C T ODF2 Silent p.H167H 0.42 TCGA-CV-7097-01 9 21367983 21367983 C T IFNA13 Silent p.L9L 0.60 TCGA-CV-7097-01 9 990054 990054 A G DMRT3 Silent p.E156E 0.12 TCGA-CV-7097-01 X 15809058 15809058 C A ZRSR2 Missense_Mutation p.H15N 0.40 deleterious(0.02) unknown(0) TCGA-CV-7099-01 10 102054806 102054806 G A PKD2L1 Silent p.I477I 0.25 TCGA-CV-7099-01 10 104125205 104125205 C T GBF1 Nonsense_Mutation p.Q719* 0.27 TCGA-CV-7099-01 10 1045024 1045024 C G GTPBP4 Missense_Mutation p.L215V 0.31 deleterious(0) probably_damaging(0.99) TCGA-CV-7099-01 10 106907372 106907372 C T SORCS3 Intron 0.27 TCGA-CV-7099-01 10 135015069 135015069 G A KNDC1 Silent p.S1018S 0.34 TCGA-CV-7099-01 10 135015189 135015189 C T KNDC1 Silent p.G1058G 0.23 TCGA-CV-7099-01 10 16957859 16957859 C G CUBN Missense_Mutation p.E2391Q 0.31 tolerated(0.3) possibly_damaging(0.864) TCGA-CV-7099-01 10 24669819 24669819 C T KIAA1217 Missense_Mutation p.H126Y 0.24 tolerated(0.09) probably_damaging(0.991) TCGA-CV-7099-01 10 28971090 28971090 G C BAMBI Missense_Mutation p.K181N 0.27 deleterious(0.03) possibly_damaging(0.776) TCGA-CV-7099-01 10 55582664 55582664 C T PCDH15 Missense_Mutation p.E1610K 0.46 tolerated_low_confidence(0.17) benign(0.003) TCGA-CV-7099-01 10 60936718 60936718 C T PHYHIPL Silent p.D35D 0.24 TCGA-CV-7099-01 10 70737400 70737400 G - DDX21 Frame_Shift_Del p.G620Vfs*5 0.32 TCGA-CV-7099-01 10 77158680 77158680 G C ZNF503 Missense_Mutation p.R590G 0.36 deleterious(0) probably_damaging(0.999) TCGA-CV-7099-01 10 88277758 88277758 G C WAPAL Silent p.V23V 0.07 TCGA-CV-7099-01 10 98714869 98714869 G A LCOR Silent p.L164L 0.40 TCGA-CV-7099-01 11 117308639 117308639 C G DSCAML1 Missense_Mutation p.E1528D 0.09 tolerated(0.14) possibly_damaging(0.872) TCGA-CV-7099-01 11 13397291 13397291 C T ARNTL Missense_Mutation p.S435L 0.37 deleterious(0) probably_damaging(0.996) TCGA-CV-7099-01 11 20139931 20139931 G C NAV2 3'UTR 0.38 TCGA-CV-7099-01 11 20139988 20139988 G C NAV2 3'UTR 0.35 TCGA-CV-7099-01 11 3740767 3740767 G C NUP98 Missense_Mutation p.I758M 0.28 deleterious(0) probably_damaging(0.998) TCGA-CV-7099-01 11 47353698 47353698 C T MYBPC3 Missense_Mutation p.D1247N 0.36 deleterious(0) probably_damaging(1) TCGA-CV-7099-01 11 49805485 49805485 G C RP11-707M1.1 RNA 0.24 TCGA-CV-7099-01 11 55418944 55418944 G T OR4S2 Nonsense_Mutation p.E189* 0.17 TCGA-CV-7099-01 11 57310335 57310335 G C SMTNL1 Missense_Mutation p.D92H 0.27 deleterious(0) possibly_damaging(0.635) TCGA-CV-7099-01 11 59377944 59377944 G A OSBP Silent p.L161L 0.26 TCGA-CV-7099-01 11 67223246 67223246 C T CABP4 Nonsense_Mutation p.R118* 0.35 TCGA-CV-7099-01 11 68514686 68514686 G T MTL5 Missense_Mutation p.S207Y 0.27 deleterious(0) benign(0.316) TCGA-CV-7099-01 11 721618 721618 G A EPS8L2 Silent p.Q274Q 0.34 TCGA-CV-7099-01 11 721628 721628 G A EPS8L2 Missense_Mutation p.E278K 0.34 deleterious(0) possibly_damaging(0.907) TCGA-CV-7099-01 11 7334938 7334938 A G SYT9 Silent p.T270T 0.05 TCGA-CV-7099-01 11 75148046 75148046 A G GDPD5 Missense_Mutation p.L535P 0.28 deleterious(0) probably_damaging(0.996) TCGA-CV-7099-01 11 75277820 75277820 C T SERPINH1 Silent p.F142F 0.17 TCGA-CV-7099-01 11 77775068 77775068 C G THRSP Silent p.G47G 0.15 TCGA-CV-7099-01 11 8724164 8724164 G C ST5 Nonsense_Mutation p.S892* 0.22 TCGA-CV-7099-01 12 104461751 104461751 G C HCFC2 Silent p.V113V 0.31 TCGA-CV-7099-01 12 11091369 11091369 T C TAS2R14 Silent p.A146A 0.31 TCGA-CV-7099-01 12 112183993 112183993 G C ACAD10 Missense_Mutation p.E752Q 0.30 deleterious(0.03) probably_damaging(0.969) TCGA-CV-7099-01 12 113314609 113314609 G A RPH3A Missense_Mutation p.R370H 0.28 tolerated(0.22) benign(0.004) TCGA-CV-7099-01 12 123102942 123102942 C G KNTC1 Nonsense_Mutation p.S2028* 0.29 TCGA-CV-7099-01 12 123214171 123214171 G A HCAR1 Missense_Mutation p.A239V 0.33 tolerated(0.91) probably_damaging(0.999) TCGA-CV-7099-01 12 124092179 124092179 G A DDX55 Missense_Mutation p.G124E 0.25 tolerated(1) benign(0.063) TCGA-CV-7099-01 12 53071509 53071509 C A KRT1 Missense_Mutation p.M296I 0.28 deleterious(0.04) benign(0.048) TCGA-CV-7099-01 12 56477581 56477581 G A ERBB3 Silent p.E43E 0.26 TCGA-CV-7099-01 12 56481620 56481620 T C ERBB3 Missense_Mutation p.F219L 0.22 deleterious(0.01) probably_damaging(1) TCGA-CV-7099-01 12 6709458 6709458 G T CHD4 Silent p.P389P 0.13 TCGA-CV-7099-01 12 6709459 6709459 G A CHD4 Missense_Mutation p.P389L 0.14 deleterious(0) benign(0.073) TCGA-CV-7099-01 12 67706416 67706416 G C CAND1 Missense_Mutation p.E1167Q 0.33 deleterious(0) probably_damaging(0.993) TCGA-CV-7099-01 12 7069304 7069304 C T PTPN6 Missense_Mutation p.R495C 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7099-01 12 85434273 85434273 A G LRRIQ1 Silent p.S46S 0.29 TCGA-CV-7099-01 13 103450951 103450951 C G KDELC1 Missense_Mutation p.E24Q 0.40 tolerated(0.35) benign(0.001) TCGA-CV-7099-01 13 111996452 111996452 C T TEX29 Silent p.A146A 0.36 TCGA-CV-7099-01 13 112722212 112722212 G A SOX1 Silent p.E80E 0.48 TCGA-CV-7099-01 13 21172820 21172820 G T IFT88 Missense_Mutation p.V218F 0.11 tolerated(0.08) benign(0.005) TCGA-CV-7099-01 13 30091803 30091803 C T SLC7A1 Missense_Mutation p.E473K 0.10 tolerated(0.2) benign(0.14) TCGA-CV-7099-01 13 51922447 51922447 G C SERPINE3 Missense_Mutation p.D267H 0.40 deleterious(0.05) probably_damaging(0.928) TCGA-CV-7099-01 14 23444286 23444286 G A AJUBA Missense_Mutation p.H423Y 0.29 deleterious(0) benign(0.112) TCGA-CV-7099-01 14 23518917 23518917 C G CDH24 Missense_Mutation p.D544H 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-7099-01 14 30046490 30046490 T A PRKD1 Missense_Mutation p.E898V 0.15 deleterious_low_confidence(0.04) benign(0.104) TCGA-CV-7099-01 14 31813139 31813139 C T HEATR5A Missense_Mutation p.R771Q 0.24 deleterious(0.02) benign(0.009) TCGA-CV-7099-01 14 67815782 67815782 C G ATP6V1D Missense_Mutation p.K93N 0.36 deleterious(0) probably_damaging(0.965) TCGA-CV-7099-01 14 68022580 68022580 G C PLEKHH1 Missense_Mutation p.Q55H 0.13 tolerated(0.09) benign(0.009) TCGA-CV-7099-01 14 92549555 92549555 C T ATXN3 Missense_Mutation p.D175N 0.40 deleterious(0.02) possibly_damaging(0.723) TCGA-CV-7099-01 14 93199105 93199105 G A LGMN Silent p.L9L 0.24 TCGA-CV-7099-01 14 94083611 94083611 G A UNC79 Silent p.R1218R 0.08 TCGA-CV-7099-01 15 23316167 23316167 C A HERC2P2 RNA 0.21 TCGA-CV-7099-01 15 23890608 23890608 G T MAGEL2 Missense_Mutation p.A158E 0.09 deleterious_low_confidence(0) possibly_damaging(0.518) TCGA-CV-7099-01 15 40662125 40662125 C T DISP2 Missense_Mutation p.P1271L 0.25 deleterious(0.01) benign(0.394) TCGA-CV-7099-01 15 40697936 40697936 C T IVD 5'Flank 0.36 TCGA-CV-7099-01 15 41804949 41804949 C T LTK Silent p.L105L 0.35 TCGA-CV-7099-01 15 45007631 45007632 - A B2M Frame_Shift_Ins p.I27Nfs*30 0.27 TCGA-CV-7099-01 15 59910430 59910430 C T GCNT3 5'UTR 0.29 TCGA-CV-7099-01 15 64365001 64365001 G C FAM96A 3'UTR 0.20 TCGA-CV-7099-01 15 65219178 65219178 G C ANKDD1A Missense_Mutation p.D184H 0.05 tolerated(0.12) probably_damaging(0.958) TCGA-CV-7099-01 15 65319319 65319319 G C MTFMT Nonsense_Mutation p.S90* 0.22 TCGA-CV-7099-01 15 74372982 74372982 G C GOLGA6A Missense_Mutation p.S60C 0.11 deleterious(0.03) benign(0.004) TCGA-CV-7099-01 15 85165349 85165349 G C ZSCAN2 3'UTR 0.28 TCGA-CV-7099-01 15 89070909 89070909 G A DET1 Missense_Mutation p.R409C 0.20 deleterious(0.04) possibly_damaging(0.848) TCGA-CV-7099-01 16 1143809 1143809 G A C1QTNF8 Silent p.L151L 0.07 TCGA-CV-7099-01 16 14015908 14015908 G A ERCC4 Silent p.L76L 0.22 TCGA-CV-7099-01 16 15661909 15661909 C T C16orf45 Silent p.I100I 0.30 TCGA-CV-7099-01 16 2234836 2234836 G A CASKIN1 Missense_Mutation p.A453V 0.18 benign(0.002) TCGA-CV-7099-01 16 28944612 28944612 C G CD19 Missense_Mutation p.S206C 0.33 deleterious(0.02) benign(0.418) TCGA-CV-7099-01 16 31092645 31092645 C T ZNF646 Missense_Mutation p.S1667F 0.18 tolerated(0.42) benign(0.032) TCGA-CV-7099-01 16 3639184 3639184 C T SLX4 Silent p.Q1485Q 0.32 TCGA-CV-7099-01 16 56226562 56226562 A G GNAO1 Intron 0.48 TCGA-CV-7099-01 16 56652550 56652550 C T MT1L RNA 0.41 TCGA-CV-7099-01 16 57060491 57060491 C T NLRC5 Missense_Mutation p.R546C 0.47 deleterious(0) probably_damaging(0.981) TCGA-CV-7099-01 16 70515274 70515274 G C COG4 Silent p.L741L 0.03 TCGA-CV-7099-01 16 712044 712044 G A WDR90 Missense_Mutation p.D1340N 0.25 deleterious(0) probably_damaging(0.984) TCGA-CV-7099-01 16 71571751 71571751 G A CHST4 3'UTR 0.44 TCGA-CV-7099-01 16 72992559 72992559 G A ZFHX3 Missense_Mutation p.P496S 0.39 benign(0.01) TCGA-CV-7099-01 16 75665700 75665700 C T KARS Silent p.R351R 0.41 TCGA-CV-7099-01 16 81968079 81968079 G A PLCG2 Missense_Mutation p.E929K 0.38 deleterious(0) possibly_damaging(0.653) TCGA-CV-7099-01 17 10442663 10442663 G A MYH2 Silent p.N425N 0.13 TCGA-CV-7099-01 17 1582167 1582167 C G PRPF8 Missense_Mutation p.K536N 0.12 deleterious(0) probably_damaging(0.998) TCGA-CV-7099-01 17 1582626 1582626 C G PRPF8 Silent p.L456L 0.11 TCGA-CV-7099-01 17 15884351 15884351 C T ZSWIM7 Intron 0.26 TCGA-CV-7099-01 17 17942267 17942267 C T ATPAF2 Missense_Mutation p.G21S 0.50 tolerated_low_confidence(0.37) benign(0.002) TCGA-CV-7099-01 17 18039062 18039062 G A MYO15A Missense_Mutation p.R1507Q 0.21 unknown(0) TCGA-CV-7099-01 17 27581304 27581307 GAGA - CRYBA1 Frame_Shift_Del p.R196Sfs*21 0.25 TCGA-CV-7099-01 17 40087031 40087031 G A TTC25 RNA 0.36 TCGA-CV-7099-01 17 41246860 41246860 C G BRCA1 Missense_Mutation p.E230Q 0.38 deleterious(0) possibly_damaging(0.602) TCGA-CV-7099-01 17 45924944 45924944 G A SP6 Silent p.F284F 0.30 TCGA-CV-7099-01 17 46670537 46670537 C T HOXB5 Missense_Mutation p.E170K 0.26 tolerated(0.13) benign(0.114) TCGA-CV-7099-01 17 48615544 48615544 G A EPN3 Missense_Mutation p.E223K 0.22 deleterious(0) probably_damaging(1) TCGA-CV-7099-01 17 72353305 72353305 C T BTBD17 Missense_Mutation p.A310T 0.31 tolerated(0.32) benign(0.022) TCGA-CV-7099-01 17 72741479 72741479 G A RAB37 Missense_Mutation p.E206K 0.35 tolerated(0.1) benign(0.022) TCGA-CV-7099-01 17 74136166 74136166 A C FOXJ1 Missense_Mutation p.L104R 0.14 deleterious(0.01) benign(0.186) TCGA-CV-7099-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.36 deleterious(0) probably_damaging(0.985) TCGA-CV-7099-01 17 77043984 77043984 C G C1QTNF1 Missense_Mutation p.I220M 0.34 tolerated(0.06) possibly_damaging(0.897) TCGA-CV-7099-01 17 78265449 78265449 C G RNF213 Missense_Mutation p.L432V 0.05 probably_damaging(0.994) TCGA-CV-7099-01 17 8422110 8422110 C G MYH10 Splice_Site p.X782_splice 0.06 TCGA-CV-7099-01 18 21293932 21293932 C G LAMA3 Missense_Mutation p.P115A 0.28 probably_damaging(1) TCGA-CV-7099-01 18 346549 346549 C T COLEC12 Missense_Mutation p.R358Q 0.28 tolerated(0.35) benign(0.034) TCGA-CV-7099-01 18 50278591 50278591 G A DCC Missense_Mutation p.E87K 0.28 deleterious(0.01) benign(0.043) TCGA-CV-7099-01 18 54483274 54483274 C G WDR7 Nonsense_Mutation p.S1068* 0.35 TCGA-CV-7099-01 18 77193713 77193713 C T NFATC1 Missense_Mutation p.S441L 0.28 tolerated(0.49) benign(0.014) TCGA-CV-7099-01 19 15291045 15291045 A G NOTCH3 Silent p.C1055C 0.06 TCGA-CV-7099-01 19 17430407 17430407 C G DDA1 Missense_Mutation p.S84C 0.23 deleterious(0.03) benign(0.125) TCGA-CV-7099-01 19 17615340 17615340 C T SLC27A1 Silent p.F620F 0.27 TCGA-CV-7099-01 19 18324232 18324232 C G PDE4C Missense_Mutation p.K518N 0.41 deleterious(0) probably_damaging(0.999) TCGA-CV-7099-01 19 19040041 19040041 G C HOMER3 3'UTR 0.22 TCGA-CV-7099-01 19 20045701 20045701 C T ZNF93 3'UTR 0.23 TCGA-CV-7099-01 19 22193614 22193614 G T ZNF208 5'UTR 0.28 TCGA-CV-7099-01 19 3179318 3179318 G A S1PR4 Silent p.L176L 0.09 TCGA-CV-7099-01 19 35739867 35739867 C G LSR Missense_Mutation p.P29R 0.12 tolerated_low_confidence(0.11) benign(0.006) TCGA-CV-7099-01 19 36352524 36352524 C T KIRREL2 Missense_Mutation p.S424F 0.27 deleterious(0) benign(0.331) TCGA-CV-7099-01 19 36853091 36853091 C T ZFP14 Nonsense_Mutation p.W20* 0.09 TCGA-CV-7099-01 19 38103198 38103198 C T ZNF540 Silent p.C339C 0.08 TCGA-CV-7099-01 19 39017636 39017636 G C RYR1 Missense_Mutation p.D3544H 0.16 benign(0.192) TCGA-CV-7099-01 19 39398347 39398347 G C NFKBIB Intron 0.33 TCGA-CV-7099-01 19 41596383 41596383 C T CYP2A13 Missense_Mutation p.R190C 0.29 deleterious(0.03) probably_damaging(0.973) TCGA-CV-7099-01 19 42485787 42485787 C T ATP1A3 Missense_Mutation p.R448K 0.14 tolerated(0.18) benign(0.059) TCGA-CV-7099-01 19 42794752 42794752 C T CIC Missense_Mutation p.P611L 0.07 benign(0.043) TCGA-CV-7099-01 19 44500612 44500612 G C ZNF155 Missense_Mutation p.E212D 0.20 deleterious(0.03) benign(0.005) TCGA-CV-7099-01 19 45910389 45910389 G A CD3EAP Silent p.A20A 0.28 TCGA-CV-7099-01 19 49355547 49355547 C T PLEKHA4 Missense_Mutation p.E455K 0.25 deleterious(0) possibly_damaging(0.808) TCGA-CV-7099-01 19 52659522 52659522 A G ZNF836 Missense_Mutation p.C472R 0.08 deleterious(0) probably_damaging(1) TCGA-CV-7099-01 19 53612343 53612343 G A ZNF415 Nonsense_Mutation p.Q319* 0.33 TCGA-CV-7099-01 19 56896256 56896256 C G ZNF582 Missense_Mutation p.R177T 0.36 tolerated(0.13) benign(0.001) TCGA-CV-7099-01 19 58721350 58721350 G A ZNF274 Missense_Mutation p.E254K 0.26 tolerated(0.44) benign(0) TCGA-CV-7099-01 19 58928446 58928446 C T ZNF584 Silent p.F187F 0.24 TCGA-CV-7099-01 19 6916361 6916361 G C EMR1 Missense_Mutation p.E468Q 0.33 tolerated(0.37) benign(0.041) TCGA-CV-7099-01 19 7593497 7593497 C T MCOLN1 Missense_Mutation p.R298W 0.26 tolerated(0.18) probably_damaging(0.983) TCGA-CV-7099-01 1 100608709 100608709 G A TRMT13 Missense_Mutation p.R229K 0.16 tolerated(0.96) benign(0.006) TCGA-CV-7099-01 1 114442970 114442970 G A AP4B1 Missense_Mutation p.R224C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-7099-01 1 115153710 115153710 G C DENND2C Silent p.A451A 0.06 TCGA-CV-7099-01 1 11851316 11851316 C T MTHFR Missense_Mutation p.R567Q 0.35 deleterious(0.03) benign(0.428) TCGA-CV-7099-01 1 14108593 14108593 C T PRDM2 Nonsense_Mutation p.Q1435* 0.32 TCGA-CV-7099-01 1 14109005 14109005 C G PRDM2 Missense_Mutation p.S1572C 0.28 unknown(0) TCGA-CV-7099-01 1 147131131 147131131 C T ACP6 Missense_Mutation p.R168Q 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7099-01 1 149905304 149905304 A T MTMR11 Missense_Mutation p.L327Q 0.26 deleterious(0.01) possibly_damaging(0.779) TCGA-CV-7099-01 1 149905305 149905305 G T MTMR11 Missense_Mutation p.L327M 0.26 tolerated(0.07) possibly_damaging(0.562) TCGA-CV-7099-01 1 152282919 152282919 T C FLG Silent p.A1481A 0.09 TCGA-CV-7099-01 1 154523963 154523963 C G UBE2Q1 Missense_Mutation p.W360C 0.38 deleterious(0.02) probably_damaging(0.991) TCGA-CV-7099-01 1 155887369 155887369 G C KIAA0907 Missense_Mutation p.P454R 0.38 tolerated(0.06) possibly_damaging(0.904) TCGA-CV-7099-01 1 158548948 158548948 C T OR10X1 Missense_Mutation p.E248K 0.35 deleterious(0.04) benign(0.12) TCGA-CV-7099-01 1 160156138 160156138 C T ATP1A4 Silent p.L1014L 0.23 TCGA-CV-7099-01 1 167666869 167666872 AAAG - RCSD1 Frame_Shift_Del p.K337Sfs*8 0.33 TCGA-CV-7099-01 1 177898932 177898932 G C SEC16B 3'UTR 0.31 TCGA-CV-7099-01 1 179533893 179533893 G T NPHS2 Missense_Mutation p.L104I 0.32 tolerated(0.32) benign(0.077) TCGA-CV-7099-01 1 180012229 180012229 C T CEP350 Silent p.V1467V 0.31 TCGA-CV-7099-01 1 180601389 180601389 C G XPR1 Missense_Mutation p.Q18E 0.50 deleterious(0) possibly_damaging(0.8) TCGA-CV-7099-01 1 19505574 19505574 G A UBR4 Silent p.D775D 0.07 TCGA-CV-7099-01 1 201190818 201190818 G T IGFN1 Missense_Mutation p.G3382V 0.44 probably_damaging(0.994) TCGA-CV-7099-01 1 205290541 205290541 C G NUAK2 Missense_Mutation p.E72D 0.31 tolerated(0.09) possibly_damaging(0.657) TCGA-CV-7099-01 1 207085264 207085264 G A FAIM3 Missense_Mutation p.P174L 0.37 tolerated(0.1) benign(0.043) TCGA-CV-7099-01 1 208257734 208257734 C T PLXNA2 Silent p.Q763Q 0.28 TCGA-CV-7099-01 1 21050978 21050978 C T SH2D5 Missense_Mutation p.E181K 0.30 tolerated(0.08) probably_damaging(0.997) TCGA-CV-7099-01 1 218504373 218504373 C A RRP15 Missense_Mutation p.D263E 0.30 deleterious(0) probably_damaging(0.983) TCGA-CV-7099-01 1 22927210 22927212 CTC - EPHA8 In_Frame_Del p.S817del 0.25 TCGA-CV-7099-01 1 237893557 237893557 C T RYR2 Intron 0.25 TCGA-CV-7099-01 1 240370980 240370980 G T FMN2 Silent p.P956P 0.50 TCGA-CV-7099-01 1 248789544 248789544 C T OR2T11 Missense_Mutation p.G296R 0.28 tolerated(0.18) possibly_damaging(0.536) TCGA-CV-7099-01 1 27190444 27190444 G C SFN Missense_Mutation p.Q247H 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-7099-01 1 32134424 32134424 C T COL16A1 Silent p.L1076L 0.40 TCGA-CV-7099-01 1 33237233 33237233 C T KIAA1522 Missense_Mutation p.S818L 0.30 tolerated(0.22) benign(0.147) TCGA-CV-7099-01 1 3683848 3683848 G C CCDC27 Missense_Mutation p.E528Q 0.16 deleterious(0.01) probably_damaging(0.941) TCGA-CV-7099-01 1 41454371 41454371 C G CTPS1 Missense_Mutation p.L182V 0.07 deleterious(0) probably_damaging(0.913) TCGA-CV-7099-01 1 43047055 43047055 G C CCDC30 Missense_Mutation p.E364Q 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-CV-7099-01 1 45485782 45485782 C T ZSWIM5 Missense_Mutation p.R884H 0.25 deleterious(0.02) unknown(0) TCGA-CV-7099-01 1 886571 886571 C A NOC2L Missense_Mutation p.R460L 0.33 deleterious(0.04) possibly_damaging(0.894) TCGA-CV-7099-01 1 89521738 89521738 C T GBP1 Silent p.L443L 0.28 TCGA-CV-7099-01 1 92613302 92613302 G C BTBD8 Missense_Mutation p.E361Q 0.43 deleterious(0.01) possibly_damaging(0.791) TCGA-CV-7099-01 20 20453517 20453517 G A RALGAPA2 Silent p.N1817N 0.29 TCGA-CV-7099-01 20 23729656 23729656 C G CST1 Missense_Mutation p.Q113H 0.04 tolerated(0.15) probably_damaging(0.991) TCGA-CV-7099-01 20 25011402 25011402 G A ACSS1 Silent p.I208I 0.35 TCGA-CV-7099-01 20 34575417 34575417 G C CNBD2 Missense_Mutation p.D273H 0.26 deleterious(0) probably_damaging(0.985) TCGA-CV-7099-01 20 37174953 37174953 G C RALGAPB Missense_Mutation p.E928Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-7099-01 20 44578159 44578159 C T ZNF335 Missense_Mutation p.E1240K 0.27 deleterious(0) probably_damaging(0.998) TCGA-CV-7099-01 20 45000282 45000282 C G ELMO2 Missense_Mutation p.Q543H 0.28 deleterious(0.01) benign(0.042) TCGA-CV-7099-01 20 58514571 58514571 G C PPP1R3D Missense_Mutation p.S139W 0.32 deleterious(0) possibly_damaging(0.8) TCGA-CV-7099-01 20 61527745 61527745 C G DIDO1 Splice_Site p.X685_splice 0.24 TCGA-CV-7099-01 21 32253855 32253855 G T KRTAP11-1 5'UTR 0.27 TCGA-CV-7099-01 21 41496216 41496216 G A DSCAM Missense_Mutation p.S1201L 0.30 deleterious(0) benign(0.158) TCGA-CV-7099-01 21 46057496 46057496 G A KRTAP10-10 Silent p.Q54Q 0.32 TCGA-CV-7099-01 22 19864723 19864723 C T TXNRD2 Missense_Mutation p.V494M 0.24 deleterious(0) probably_damaging(0.921) TCGA-CV-7099-01 22 25755871 25755871 G C LRP5L Silent p.L63L 0.17 TCGA-CV-7099-01 22 37420616 37420616 C T MPST Silent p.F140F 0.44 TCGA-CV-7099-01 22 44583758 44583758 C T PARVG Nonsense_Mutation p.Q83* 0.25 TCGA-CV-7099-01 22 50906317 50906317 C G SBF1 Missense_Mutation p.E59D 0.36 tolerated(0.06) benign(0.021) TCGA-CV-7099-01 2 107460077 107460077 T G ST6GAL2 Missense_Mutation p.K119N 0.09 benign(0.014) TCGA-CV-7099-01 2 113780314 113780314 G A IL36B Silent p.L144L 0.36 TCGA-CV-7099-01 2 113940969 113940969 C T PSD4 Silent p.I312I 0.20 TCGA-CV-7099-01 2 120194890 120194890 C G TMEM37 Silent p.L149L 0.28 TCGA-CV-7099-01 2 152512709 152512709 C T NEB Missense_Mutation p.M2151I 0.25 benign(0.33) TCGA-CV-7099-01 2 162060088 162060088 C T TANK Missense_Mutation p.L64F 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7099-01 2 162273175 162273175 C T TBR1 Missense_Mutation p.P85L 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-CV-7099-01 2 163693250 163693250 C T KCNH7 Missense_Mutation p.R35K 0.38 tolerated(0.13) benign(0.219) TCGA-CV-7099-01 2 170366343 170366343 C T KLHL41 Missense_Mutation p.L19F 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7099-01 2 178098810 178098810 C T NFE2L2 Missense_Mutation p.E79K 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-7099-01 2 200137185 200137185 G A SATB2 Nonsense_Mutation p.Q651* 0.30 TCGA-CV-7099-01 2 202151270 202151270 C T CASP8 Nonsense_Mutation p.Q524* 0.33 TCGA-CV-7099-01 2 206869474 206869474 G C INO80D Missense_Mutation p.S901C 0.33 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-CV-7099-01 2 215440601 215440601 G T VWC2L 3'UTR 0.30 TCGA-CV-7099-01 2 242282467 242282467 G A SEPT2 Missense_Mutation p.D219N 0.28 deleterious(0.05) probably_damaging(1) TCGA-CV-7099-01 2 26204430 26204430 G C KIF3C Silent p.V119V 0.27 TCGA-CV-7099-01 2 27594205 27594205 G A SNX17 Missense_Mutation p.E45K 0.37 deleterious(0.02) probably_damaging(0.987) TCGA-CV-7099-01 2 27804899 27804899 G C C2orf16 Missense_Mutation p.R1820S 0.28 deleterious(0.02) unknown(0) TCGA-CV-7099-01 2 28634937 28634938 - CCAG FOSL2 Frame_Shift_Ins p.P204Sfs*56 0.15 TCGA-CV-7099-01 2 32667175 32667175 G A BIRC6 Silent p.E1329E 0.19 TCGA-CV-7099-01 2 38977291 38977291 C G SRSF7 Missense_Mutation p.G25A 0.07 tolerated(0.59) benign(0.115) TCGA-CV-7099-01 2 47136232 47136232 C T MCFD2 Missense_Mutation p.E27K 0.25 deleterious(0.04) benign(0.001) TCGA-CV-7099-01 2 54856684 54856684 G T SPTBN1 Nonsense_Mutation p.E805* 0.24 TCGA-CV-7099-01 2 55403114 55403114 C G CLHC1 Missense_Mutation p.E525Q 0.23 deleterious(0.01) probably_damaging(0.931) TCGA-CV-7099-01 2 68882429 68882429 C T PROKR1 Silent p.Y301Y 0.28 TCGA-CV-7099-01 2 73676052 73676052 A G ALMS1 Missense_Mutation p.K799E 0.29 possibly_damaging(0.782) TCGA-CV-7099-01 2 80529750 80529750 C T LRRTM1 Missense_Mutation p.E399K 0.28 tolerated(0.79) benign(0.025) TCGA-CV-7099-01 2 95539303 95539303 G C TEKT4 Missense_Mutation p.K179N 0.19 deleterious(0) probably_damaging(0.991) TCGA-CV-7099-01 2 97483071 97483071 G C CNNM3 Missense_Mutation p.E353Q 0.32 deleterious(0.01) possibly_damaging(0.782) TCGA-CV-7099-01 3 111304196 111304196 G A CD96 Missense_Mutation p.E276K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-CV-7099-01 3 121158907 121158907 G C POLQ Missense_Mutation p.Q2441E 0.27 tolerated(0.08) benign(0.168) TCGA-CV-7099-01 3 125872405 125872405 G C ALDH1L1 Nonsense_Mutation p.S257* 0.33 TCGA-CV-7099-01 3 127294643 127294643 G A TPRA1 Silent p.L207L 0.21 TCGA-CV-7099-01 3 128348837 128348837 G C RPN1 Missense_Mutation p.I331M 0.26 deleterious(0.04) benign(0.334) TCGA-CV-7099-01 3 136667114 136667114 C G NCK1 Nonsense_Mutation p.S318* 0.07 TCGA-CV-7099-01 3 140692589 140692589 G A SLC25A36 Missense_Mutation p.E162K 0.35 tolerated(0.1) benign(0.016) TCGA-CV-7099-01 3 149589832 149589832 C G RNF13 Nonsense_Mutation p.S71* 0.12 TCGA-CV-7099-01 3 150840608 150840608 G A MED12L Silent p.L81L 0.25 TCGA-CV-7099-01 3 168833803 168833803 G A MECOM Silent p.F496F 0.30 TCGA-CV-7099-01 3 170819256 170819256 C G TNIK Missense_Mutation p.S858T 0.30 tolerated(0.24) probably_damaging(0.968) TCGA-CV-7099-01 3 180685989 180685989 C T FXR1 Missense_Mutation p.S450L 0.31 tolerated(0.11) benign(0.257) TCGA-CV-7099-01 3 184079208 184079221 GGTCTGCTCGTACT - CLCN2 Frame_Shift_Del p.Q16Pfs*27 0.18 TCGA-CV-7099-01 3 197349067 197349067 G A AC024560.3 RNA 0.22 TCGA-CV-7099-01 3 2777987 2777987 C G CNTN4 Silent p.L48L 0.09 TCGA-CV-7099-01 3 49932708 49932708 C T MST1R Missense_Mutation p.E1055K 0.41 tolerated(0.33) benign(0.003) TCGA-CV-7099-01 3 57310567 57310567 G C ASB14 3'UTR 0.52 TCGA-CV-7099-01 3 9879867 9879867 G A RPUSD3 Missense_Mutation p.R297C 0.12 tolerated(0.09) benign(0.003) TCGA-CV-7099-01 4 110222950 110222950 G A COL25A1 Missense_Mutation p.H76Y 0.31 tolerated(0.42) unknown(0) TCGA-CV-7099-01 4 158233953 158233953 G C GRIA2 Missense_Mutation p.D198H 0.24 tolerated(0.09) probably_damaging(0.998) TCGA-CV-7099-01 4 158284166 158284166 C T GRIA2 Silent p.N874N 0.07 TCGA-CV-7099-01 4 166184408 166184408 A G KLHL2 Silent p.E151E 0.35 TCGA-CV-7099-01 4 186380966 186380966 C T CCDC110 Missense_Mutation p.E259K 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-7099-01 4 186380971 186380971 T A CCDC110 Missense_Mutation p.D257V 0.05 deleterious(0.04) benign(0.183) TCGA-CV-7099-01 4 187525001 187525001 G C FAT1 Nonsense_Mutation p.S3560* 0.27 TCGA-CV-7099-01 4 187525110 187525110 G A FAT1 Nonsense_Mutation p.Q3524* 0.27 TCGA-CV-7099-01 4 40122465 40122465 A G N4BP2 Missense_Mutation p.I912V 0.25 tolerated(0.5) benign(0.014) TCGA-CV-7099-01 4 42571206 42571206 C G ATP8A1 Missense_Mutation p.E438Q 0.25 tolerated(0.26) benign(0.305) TCGA-CV-7099-01 4 5586467 5586467 C G EVC2 Missense_Mutation p.E980D 0.38 deleterious(0.04) benign(0.004) TCGA-CV-7099-01 4 69433716 69433716 C T UGT2B17 Missense_Mutation p.E163K 0.26 deleterious(0.05) benign(0.34) TCGA-CV-7099-01 4 71859630 71859630 C G DCK Missense_Mutation p.I26M 0.30 deleterious(0.01) possibly_damaging(0.882) TCGA-CV-7099-01 4 72423435 72423435 G T SLC4A4 Missense_Mutation p.D924Y 0.09 deleterious(0) probably_damaging(0.995) TCGA-CV-7099-01 4 79387417 79387417 G A FRAS1 Missense_Mutation p.R2362Q 0.23 benign(0.023) TCGA-CV-7099-01 4 79780824 79780824 C G BMP2K Missense_Mutation p.P324A 0.23 deleterious(0.01) probably_damaging(0.925) TCGA-CV-7099-01 4 89426907 89426907 G A HERC5 Missense_Mutation p.E985K 0.23 deleterious(0) probably_damaging(0.988) TCGA-CV-7099-01 5 121309963 121309963 C T SRFBP1 Nonsense_Mutation p.R37* 0.32 TCGA-CV-7099-01 5 140724426 140724426 C A PCDHGA3 Missense_Mutation p.Q276K 0.33 tolerated_low_confidence(0.23) benign(0.032) TCGA-CV-7099-01 5 140794543 140794543 G A PCDHGA10 Missense_Mutation p.D601N 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7099-01 5 1409145 1409145 G A SLC6A3 Silent p.F498F 0.53 TCGA-CV-7099-01 5 14381332 14381332 G C TRIO Missense_Mutation p.E1181Q 0.29 possibly_damaging(0.908) TCGA-CV-7099-01 5 14387879 14387879 C T TRIO Silent p.I1268I 0.06 TCGA-CV-7099-01 5 150660632 150660632 C T SLC36A3 Missense_Mutation p.E404K 0.34 tolerated(0.23) benign(0.236) TCGA-CV-7099-01 5 157218825 157218825 G A CLINT1 Silent p.D422D 0.08 TCGA-CV-7099-01 5 171534828 171534828 C G STK10 Silent p.L183L 0.18 TCGA-CV-7099-01 5 176523644 176523644 C T FGFR4 Silent p.L685L 0.28 TCGA-CV-7099-01 5 35875625 35875625 T A IL7R Missense_Mutation p.I271N 0.33 deleterious(0) possibly_damaging(0.864) TCGA-CV-7099-01 5 5242298 5242298 G A ADAMTS16 Missense_Mutation p.G886R 0.29 deleterious(0) possibly_damaging(0.848) TCGA-CV-7099-01 5 61747671 61747671 C T IPO11 Nonsense_Mutation p.R183* 0.26 TCGA-CV-7099-01 5 7868022 7868022 G C FASTKD3 Missense_Mutation p.H59D 0.29 tolerated(0.06) benign(0.347) TCGA-CV-7099-01 5 90050870 90050870 G C GPR98 Missense_Mutation p.L3816F 0.30 benign(0.247) TCGA-CV-7099-01 5 96248384 96248384 C T ERAP2 Nonsense_Mutation p.Q800* 0.25 TCGA-CV-7099-01 6 102516409 102516409 G C GRIK2 3'UTR 0.45 TCGA-CV-7099-01 6 110423089 110423089 C T WASF1 Silent p.E408E 0.22 TCGA-CV-7099-01 6 13228205 13228205 G A PHACTR1 Missense_Mutation p.E382K 0.09 tolerated(0.07) possibly_damaging(0.801) TCGA-CV-7099-01 6 137243566 137243566 G C SLC35D3 5'UTR 0.43 TCGA-CV-7099-01 6 137815023 137815023 C T OLIG3 Silent p.R95R 0.38 TCGA-CV-7099-01 6 150210518 150210518 G A RAET1E Silent p.F196F 0.08 TCGA-CV-7099-01 6 18122513 18122513 T A NHLRC1 Missense_Mutation p.S109C 0.27 tolerated(0.21) benign(0) TCGA-CV-7099-01 6 18122525 18122525 G A NHLRC1 Missense_Mutation p.R105C 0.25 tolerated(0.08) benign(0.001) TCGA-CV-7099-01 6 18222258 18222258 G C KDM1B 3'UTR 0.30 TCGA-CV-7099-01 6 26043802 26043802 C T HIST1H2BB Silent p.K28K 0.25 TCGA-CV-7099-01 6 27839926 27839926 C T HIST1H3I Silent p.Q56Q 0.36 TCGA-CV-7099-01 6 30671427 30671427 C T MDC1 Missense_Mutation p.D1845N 0.28 tolerated(0.2) benign(0.006) TCGA-CV-7099-01 6 31323241 31323241 G C HLA-B Missense_Mutation p.Q250E 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.793) TCGA-CV-7099-01 6 31324637 31324637 G C HLA-B Missense_Mutation p.F57L 0.39 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-CV-7099-01 6 34498110 34498110 C T PACSIN1 Silent p.P293P 0.36 TCGA-CV-7099-01 6 40359796 40359796 C G LRFN2 Missense_Mutation p.W752C 0.30 deleterious(0) probably_damaging(0.997) TCGA-CV-7099-01 6 47680160 47680160 G A GPR115 Missense_Mutation p.R123Q 0.29 tolerated(0.48) benign(0.005) TCGA-CV-7099-01 6 71442124 71442124 C T SMAP1 Silent p.I54I 0.19 TCGA-CV-7099-01 6 7586033 7586033 G A DSP Silent p.R2846R 0.23 TCGA-CV-7099-01 6 76660391 76660391 C T IMPG1 Missense_Mutation p.R571Q 0.12 tolerated(1) benign(0.019) TCGA-CV-7099-01 7 100085946 100085946 G A NYAP1 Missense_Mutation p.R201Q 0.27 tolerated(0.71) benign(0.049) TCGA-CV-7099-01 7 100253069 100253069 G A ACTL6B Silent p.V81V 0.27 TCGA-CV-7099-01 7 13975358 13975358 C A ETV1 Missense_Mutation p.D177Y 0.07 deleterious(0.02) benign(0.012) TCGA-CV-7099-01 7 148427271 148427271 G A CUL1 Silent p.Q19Q 0.27 TCGA-CV-7099-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.79 deleterious(0) probably_damaging(0.991) TCGA-CV-7099-01 7 151262822 151262822 A T PRKAG2 Silent p.P461P 0.25 TCGA-CV-7099-01 7 158679719 158679719 G C WDR60 Missense_Mutation p.E315Q 0.69 tolerated(0.07) benign(0.246) TCGA-CV-7099-01 7 1608785 1608785 G C PSMG3 Missense_Mutation p.T64R 0.30 deleterious(0) probably_damaging(0.975) TCGA-CV-7099-01 7 27222479 27222479 C T HOXA11 Missense_Mutation p.R293K 0.30 tolerated(0.07) probably_damaging(0.992) TCGA-CV-7099-01 7 48318519 48318519 A T ABCA13 Missense_Mutation p.L2576F 0.35 benign(0.01) TCGA-CV-7099-01 7 50467665 50467665 G A IKZF1 Silent p.E258E 0.16 TCGA-CV-7099-01 7 87179526 87179526 G C ABCB1 Silent p.V437V 0.06 TCGA-CV-7099-01 7 99693502 99693502 G C MCM7 Missense_Mutation p.P497R 0.32 deleterious(0.03) benign(0.429) TCGA-CV-7099-01 7 99951166 99951166 C G PILRB 5'UTR 0.47 TCGA-CV-7099-01 8 101016160 101016160 G A RGS22 Missense_Mutation p.S874F 0.29 tolerated(0.34) possibly_damaging(0.877) TCGA-CV-7099-01 8 103848575 103848575 C T AZIN1 Missense_Mutation p.E165K 0.30 tolerated(0.23) possibly_damaging(0.635) TCGA-CV-7099-01 8 11637314 11637314 G C NEIL2 Missense_Mutation p.E116Q 0.38 tolerated(0.42) benign(0.011) TCGA-CV-7099-01 8 133898883 133898883 C G TG Silent p.L422L 0.03 TCGA-CV-7099-01 8 144943655 144943655 G A EPPK1 Missense_Mutation p.S1256F 0.42 probably_damaging(0.996) TCGA-CV-7099-01 8 30699749 30699749 C T TEX15 Missense_Mutation p.R2262K 0.31 tolerated(0.46) benign(0.007) TCGA-CV-7099-01 8 37696479 37696479 G C GPR124 Silent p.L755L 0.19 TCGA-CV-7099-01 8 66992626 66992626 C T DNAJC5B Silent p.I116I 0.29 TCGA-CV-7099-01 8 7721086 7721086 C T SPAG11A 3'UTR 0.26 TCGA-CV-7099-01 8 87623893 87623893 C G CNGB3 Missense_Mutation p.D529H 0.22 deleterious(0) probably_damaging(0.987) TCGA-CV-7099-01 8 91940500 91940500 G A NECAB1 Silent p.Q222Q 0.38 TCGA-CV-7099-01 8 91940510 91940510 G C NECAB1 Missense_Mutation p.D226H 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7099-01 8 98943558 98943558 C T MATN2 Nonsense_Mutation p.Q174* 0.11 TCGA-CV-7099-01 9 106864358 106864358 G C SMC2 Missense_Mutation p.E252Q 0.12 tolerated(0.36) benign(0.038) TCGA-CV-7099-01 9 107288808 107288808 G A OR13C4 Missense_Mutation p.T228M 0.48 tolerated(0.14) benign(0) TCGA-CV-7099-01 9 111705270 111705270 G C CTNNAL1 Missense_Mutation p.L704V 0.47 tolerated(1) benign(0.371) TCGA-CV-7099-01 9 130116626 130116626 G C GARNL3 Missense_Mutation p.E566Q 0.37 tolerated(0.18) benign(0.009) TCGA-CV-7099-01 9 134165521 134165521 C G PPAPDC3 Nonsense_Mutation p.S46* 0.28 TCGA-CV-7099-01 9 136031310 136031310 G A GBGT1 Nonsense_Mutation p.Q68* 0.47 TCGA-CV-7099-01 9 139401042 139401042 C G NOTCH1 Missense_Mutation p.K1317N 0.14 tolerated(0.05) benign(0.24) TCGA-CV-7099-01 9 140109353 140109353 C T NDOR1 Silent p.L316L 0.58 TCGA-CV-7099-01 9 140728824 140728824 C T EHMT1 Silent p.D1188D 0.24 TCGA-CV-7099-01 9 21227646 21227646 G C IFNA17 Missense_Mutation p.S176C 0.21 deleterious(0.01) benign(0.426) TCGA-CV-7099-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.38 TCGA-CV-7099-01 9 27284656 27284656 G A EQTN 3'Flank 0.43 TCGA-CV-7099-01 9 34256601 34256601 C T KIF24 Missense_Mutation p.D1002N 0.40 tolerated(0.11) benign(0.005) TCGA-CV-7099-01 9 34635731 34635731 G T SIGMAR1 Silent p.V190V 0.20 TCGA-CV-7099-01 9 37740340 37740340 G C FRMPD1 Silent p.S605S 0.46 TCGA-CV-7099-01 9 43861099 43861099 C T CNTNAP3B Missense_Mutation p.A658V 0.22 tolerated(0.11) benign(0.02) TCGA-CV-7099-01 9 98774964 98774964 G C ERCC6L2 Missense_Mutation p.D350H 0.53 deleterious(0) possibly_damaging(0.542) TCGA-CV-7099-01 X 100169570 100169570 G C XKRX Missense_Mutation p.F369L 0.30 tolerated(0.4) benign(0.082) TCGA-CV-7099-01 X 107925060 107925060 C G COL4A5 Missense_Mutation p.I1386M 0.18 benign(0.041) TCGA-CV-7099-01 X 109764970 109764970 A G TDGF1P3 RNA 0.34 TCGA-CV-7099-01 X 117707777 117707778 - T DOCK11 Frame_Shift_Ins p.I398Yfs*7 0.22 TCGA-CV-7099-01 X 118586986 118586986 C A SLC25A43 Missense_Mutation p.F328L 0.30 tolerated_low_confidence(0.51) benign(0) TCGA-CV-7099-01 X 118763373 118763373 G A SEPT6 Silent p.F396F 0.40 TCGA-CV-7099-01 X 129203540 129203540 C T ELF4 Missense_Mutation p.E308K 0.08 tolerated(0.07) benign(0.195) TCGA-CV-7099-01 X 134654746 134654746 G A DDX26B 5'UTR 0.33 TCGA-CV-7099-01 X 134989482 134989482 C T SAGE1 Silent p.V296V 0.05 TCGA-CV-7099-01 X 134991057 134991057 G A SAGE1 Silent p.K492K 0.34 TCGA-CV-7099-01 X 136652129 136652129 C A ZIC3 Missense_Mutation p.S435Y 0.36 deleterious(0) probably_damaging(0.986) TCGA-CV-7099-01 X 138619217 138619217 G A F9 Missense_Mutation p.R46K 0.04 deleterious(0) benign(0.055) TCGA-CV-7099-01 X 142795394 142795394 G A SPANXN2 Missense_Mutation p.S95F 0.31 deleterious(0.02) unknown(0) TCGA-CV-7099-01 X 151123391 151123391 C G GABRE Missense_Mutation p.E435Q 0.30 tolerated(1) benign(0.022) TCGA-CV-7099-01 X 152845456 152845456 C T ATP2B3 Silent p.F1121F 0.40 TCGA-CV-7099-01 X 16774794 16774794 C T SYAP1 Missense_Mutation p.R245W 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-7099-01 X 40534538 40534538 A T MED14 Missense_Mutation p.S986T 0.25 deleterious(0) probably_damaging(0.955) TCGA-CV-7099-01 X 49067781 49067781 C A CACNA1F Splice_Site p.X1431_splice 0.18 TCGA-CV-7099-01 X 49958650 49958650 C T AKAP4 Silent p.E238E 0.25 TCGA-CV-7099-01 X 6451714 6451714 G A VCX3A 3'UTR 0.14 TCGA-CV-7099-01 X 69424816 69424816 C T DGAT2L6 Missense_Mutation p.P292S 0.28 tolerated(0.16) probably_damaging(1) TCGA-CV-7099-01 X 73044438 73044438 G C XIST RNA 0.36 TCGA-CV-7099-01 X 78216842 78216842 C A P2RY10 Missense_Mutation p.S275R 0.33 tolerated(0.3) benign(0.02) TCGA-CV-7099-01 X 79975138 79975138 C T BRWD3 Missense_Mutation p.E632K 0.24 deleterious(0.01) possibly_damaging(0.784) TCGA-CV-7099-01 X 92927775 92927775 C - NAP1L3 Frame_Shift_Del p.V177Cfs*12 0.21 TCGA-CV-7099-01 X 96204003 96204003 G A DIAPH2 Missense_Mutation p.E527K 0.24 deleterious(0.04) unknown(0) TCGA-CV-7100-01 12 52818040 52818040 G A KRT75 3'UTR 0.44 TCGA-CV-7100-01 15 23261077 23261077 G A GOLGA8I Missense_Mutation p.R251Q 0.26 tolerated(0.27) benign(0.021) TCGA-CV-7100-01 15 85383922 85383922 C - ALPK3 Frame_Shift_Del p.Q675Sfs*30 0.19 TCGA-CV-7100-01 16 70693992 70693993 - AGCTG IL34 Frame_Shift_Ins p.Y213Sfs*20 0.23 TCGA-CV-7100-01 16 75146279 75146279 A G LDHD Missense_Mutation p.L500P 0.07 deleterious(0) probably_damaging(0.997) TCGA-CV-7100-01 19 12188121 12188121 G A ZNF844 3'UTR 0.73 TCGA-CV-7100-01 1 17405619 17405619 C G PADI2 Intron 0.64 TCGA-CV-7100-01 1 19451143 19451143 T G UBR4 Silent p.L3160L 0.22 TCGA-CV-7100-01 1 46099783 46099784 - A GPBP1L1 Frame_Shift_Ins p.S291Efs*15 0.27 TCGA-CV-7100-01 20 1961249 1961249 T G PDYN Missense_Mutation p.Y162S 0.05 tolerated(0.55) benign(0) TCGA-CV-7100-01 20 8678323 8678323 C T PLCB1 Silent p.L354L 0.30 TCGA-CV-7100-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.57 probably_damaging(1) TCGA-CV-7100-01 2 29451772 29451774 ACC T ALK Frame_Shift_Del p.G931Rfs*16 0.34 TCGA-CV-7100-01 3 119219666 119219667 - AG TIMMDC1 Frame_Shift_Ins p.S108Rfs*40 0.31 TCGA-CV-7100-01 3 129275049 129275066 CTCAGTATTTCCCAGTCT - PLXND1 3'UTR 0.20 TCGA-CV-7100-01 3 138724434 138724434 A G PRR23A Missense_Mutation p.V226A 0.25 deleterious(0.01) benign(0.418) TCGA-CV-7100-01 3 160239585 160239585 G A KPNA4 Silent p.H295H 0.40 TCGA-CV-7100-01 3 174974236 174974236 G A NAALADL2 Missense_Mutation p.D286N 0.14 deleterious(0) probably_damaging(0.962) TCGA-CV-7100-01 4 162307557 162307558 - T FSTL5 Frame_Shift_Ins p.I629Nfs*2 0.23 TCGA-CV-7100-01 4 185684332 185684332 C T ACSL1 Missense_Mutation p.G504S 0.23 deleterious(0.03) possibly_damaging(0.846) TCGA-CV-7100-01 4 72319250 72319250 C G SLC4A4 Missense_Mutation p.A454G 0.19 tolerated(0.08) possibly_damaging(0.859) TCGA-CV-7100-01 5 149676844 149676844 C A ARSI Missense_Mutation p.C548F 0.36 tolerated_low_confidence(0.13) benign(0.003) TCGA-CV-7100-01 7 6797367 6797367 C T RSPH10B2 Missense_Mutation p.S20L 0.26 deleterious(0.04) probably_damaging(0.922) TCGA-CV-7100-01 8 118170064 118170064 G A SLC30A8 Missense_Mutation p.A185T 0.34 deleterious(0) probably_damaging(1) TCGA-CV-7100-01 9 113018772 113018772 C G TXN 5'UTR 0.57 TCGA-CV-7101-01 10 106113526 106113526 C G CCDC147 5'UTR 0.27 TCGA-CV-7101-01 10 17127720 17127720 C - CUBN Frame_Shift_Del p.K663Sfs*38 0.27 TCGA-CV-7101-01 10 26243891 26243891 T A MYO3A Missense_Mutation p.F86Y 0.07 tolerated(1) benign(0.006) TCGA-CV-7101-01 10 31810429 31810429 A G ZEB1 Silent p.T723T 0.15 TCGA-CV-7101-01 10 54074846 54074846 G T DKK1 Splice_Site p.X136_splice 0.12 TCGA-CV-7101-01 10 87407143 87407143 T G GRID1 Missense_Mutation p.D670A 0.08 deleterious(0) probably_damaging(0.998) TCGA-CV-7101-01 10 91177111 91177111 C T IFIT5 Missense_Mutation p.A52V 0.10 deleterious(0.05) benign(0.004) TCGA-CV-7101-01 11 10064472 10064472 A G SBF2 Silent p.F66F 0.43 TCGA-CV-7101-01 11 118392789 118392789 G A KMT2A Missense_Mutation p.E3941K 0.14 probably_damaging(0.997) TCGA-CV-7101-01 11 126136385 126136385 C T SRPR Missense_Mutation p.E276K 0.17 tolerated(0.19) benign(0.14) TCGA-CV-7101-01 11 17741386 17741386 T G MYOD1 Silent p.S19S 0.34 TCGA-CV-7101-01 11 281335 281335 C A NLRP6 Missense_Mutation p.A534D 0.45 tolerated(0.26) benign(0.043) TCGA-CV-7101-01 11 65108938 65108938 C T DPF2 Missense_Mutation p.R124C 0.20 tolerated(0.14) possibly_damaging(0.517) TCGA-CV-7101-01 11 70176348 70176348 C T PPFIA1 Missense_Mutation p.R334C 0.35 deleterious(0) probably_damaging(0.976) TCGA-CV-7101-01 11 71727303 71727306 CCAG - NUMA1 Frame_Shift_Del p.L415Kfs*3 0.23 TCGA-CV-7101-01 11 792580 792580 T C SLC25A22 Missense_Mutation p.Y187C 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7101-01 11 8947244 8947244 C G C11orf16 Missense_Mutation p.E324Q 0.21 deleterious(0.03) probably_damaging(0.943) TCGA-CV-7101-01 11 8948556 8948556 C G C11orf16 Missense_Mutation p.E164Q 0.18 deleterious(0.02) benign(0.084) TCGA-CV-7101-01 12 121221519 121221519 G C SPPL3 Missense_Mutation p.P116R 0.53 deleterious(0) probably_damaging(0.999) TCGA-CV-7101-01 12 129563188 129563188 C A TMEM132D Missense_Mutation p.G669V 0.37 deleterious(0) benign(0.18) TCGA-CV-7101-01 12 31552693 31552693 C T DENND5B Missense_Mutation p.G988E 0.28 deleterious(0) probably_damaging(1) TCGA-CV-7101-01 12 4479380 4479380 C T FGF23 3'UTR 0.50 TCGA-CV-7101-01 12 49722756 49722756 A G TROAP Missense_Mutation p.Q313R 0.33 tolerated(0.59) possibly_damaging(0.647) TCGA-CV-7101-01 12 6954658 6954658 G T CDCA3 3'Flank 0.44 TCGA-CV-7101-01 12 7636160 7636160 T G CD163 Missense_Mutation p.Q964P 0.12 deleterious(0) possibly_damaging(0.609) TCGA-CV-7101-01 12 81661805 81661805 T C PPFIA2 Silent p.E1124E 0.33 TCGA-CV-7101-01 13 100622499 100622499 C G ZIC5 Missense_Mutation p.K477N 0.04 deleterious(0) possibly_damaging(0.885) TCGA-CV-7101-01 13 113678963 113678963 C T MCF2L Missense_Mutation p.R57W 0.08 deleterious(0) probably_damaging(1) TCGA-CV-7101-01 13 36229091 36229091 A T NBEA Missense_Mutation p.Y2691F 0.38 tolerated(0.69) benign(0.027) TCGA-CV-7101-01 13 88330022 88330022 G A SLITRK5 Silent p.Q793Q 0.39 TCGA-CV-7101-01 13 88330023 88330023 C A SLITRK5 Missense_Mutation p.Q794K 0.38 tolerated(0.95) benign(0) TCGA-CV-7101-01 13 99043103 99043103 G C FARP1 Missense_Mutation p.E353Q 0.21 deleterious(0.03) probably_damaging(0.962) TCGA-CV-7101-01 14 104570801 104570801 C T ASPG Missense_Mutation p.T305I 0.15 deleterious(0.01) possibly_damaging(0.736) TCGA-CV-7101-01 14 105920571 105920571 G A MTA1 Silent p.K158K 0.17 TCGA-CV-7101-01 14 21499312 21499312 C A TPPP2 Silent p.T105T 0.17 TCGA-CV-7101-01 14 22090461 22090461 C A TRAV1-1 Missense_Mutation p.Q23K 0.16 tolerated(0.12) benign(0.07) TCGA-CV-7101-01 14 23243254 23243254 A G SLC7A7 Silent p.D439D 0.37 TCGA-CV-7101-01 14 24885013 24885013 C T NYNRIN Missense_Mutation p.A1353V 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-7101-01 14 25100420 25100420 C G GZMB Missense_Mutation p.G201R 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7101-01 14 50159911 50159911 G C KLHDC1 5'UTR 0.09 TCGA-CV-7101-01 14 57957682 57957682 A T C14orf105 Intron 0.31 TCGA-CV-7101-01 14 75140809 75140809 G T AREL1 Missense_Mutation p.F362L 0.50 tolerated(1) benign(0) TCGA-CV-7101-01 15 22935896 22935896 G A CYFIP1 Missense_Mutation p.V278I 0.14 tolerated(0.19) benign(0.024) TCGA-CV-7101-01 15 28386588 28386588 G T HERC2 Missense_Mutation p.A4002D 0.57 benign(0.08) TCGA-CV-7101-01 15 49054851 49054851 G C CEP152 Missense_Mutation p.Q767E 0.55 tolerated(0.3) probably_damaging(0.994) TCGA-CV-7101-01 15 83478538 83478538 C T WHAMM Silent p.F20F 0.34 TCGA-CV-7101-01 15 85487997 85487997 C T SLC28A1 Silent p.Y591Y 0.53 TCGA-CV-7101-01 16 19586419 19586419 G A C16orf62 Splice_Site p.X226_splice 0.13 TCGA-CV-7101-01 16 22271782 22271782 G C EEF2K Splice_Site p.X411_splice 0.04 TCGA-CV-7101-01 16 223537 223537 C T HBA2 Missense_Mutation p.H123Y 0.15 deleterious(0) probably_damaging(0.931) TCGA-CV-7101-01 16 28877954 28877954 C T SH2B1 Missense_Mutation p.S180F 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-CV-7101-01 16 4408429 4408429 C T CORO7 Missense_Mutation p.R799Q 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7101-01 16 55862770 55862770 C A CES1 Missense_Mutation p.A57S 0.13 deleterious(0) probably_damaging(1) TCGA-CV-7101-01 16 57238809 57238809 C A RSPRY1 Missense_Mutation p.P80H 0.09 tolerated(0.14) probably_damaging(0.998) TCGA-CV-7101-01 16 64984742 64984742 C A CDH11 Missense_Mutation p.A608S 0.37 deleterious(0.01) benign(0.081) TCGA-CV-7101-01 16 67683451 67683451 C T RLTPR Silent p.I616I 0.17 TCGA-CV-7101-01 16 67862656 67862656 C G CENPT Missense_Mutation p.K457N 0.06 deleterious(0.01) probably_damaging(0.935) TCGA-CV-7101-01 16 67917557 67917557 G A EDC4 Silent p.P1312P 0.15 TCGA-CV-7101-01 16 75276926 75276926 G T BCAR1 Silent p.R71R 0.13 TCGA-CV-7101-01 16 81253869 81253869 C T PKD1L2 Missense_Mutation p.R36K 0.17 tolerated(0.12) benign(0.076) TCGA-CV-7101-01 17 16835813 16835813 C G TBC1D27 RNA 0.09 TCGA-CV-7101-01 17 171088 171088 C T RPH3AL Missense_Mutation p.D66N 0.26 deleterious(0) probably_damaging(0.986) TCGA-CV-7101-01 17 19286398 19286398 G A MAPK7 Missense_Mutation p.D769N 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-CV-7101-01 17 19610064 19610064 G A SLC47A2 Silent p.S282S 0.26 TCGA-CV-7101-01 17 37673784 37673784 A G CDK12 Missense_Mutation p.R980G 0.22 probably_damaging(0.997) TCGA-CV-7101-01 17 39412084 39412084 C A KRTAP9-9 Nonsense_Mutation p.C149* 0.31 TCGA-CV-7101-01 17 39644611 39644611 C T KRT36 Missense_Mutation p.D195N 0.36 deleterious(0.02) probably_damaging(0.916) TCGA-CV-7101-01 17 42478140 42478140 T G GPATCH8 Missense_Mutation p.K435N 0.07 tolerated(0.12) possibly_damaging(0.835) TCGA-CV-7101-01 17 44249585 44249585 C T KANSL1 5'UTR 0.29 TCGA-CV-7101-01 17 46153470 46153470 G A CBX1 Nonsense_Mutation p.Q71* 0.16 TCGA-CV-7101-01 17 72588986 72588986 G C C17orf77 3'UTR 0.12 TCGA-CV-7101-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.36 TCGA-CV-7101-01 17 7578420 7578420 C A TP53 Silent p.T170T 0.40 TCGA-CV-7101-01 17 80865685 80865685 G A TBCD Silent p.Q657Q 0.22 TCGA-CV-7101-01 18 34855109 34855109 G T CELF4 Silent p.T182T 0.09 TCGA-CV-7101-01 18 47405423 47405425 CAT TATGAG MYO5B In_Frame_Ins p.M1056delinsLI 0.58 TCGA-CV-7101-01 18 5291434 5291434 G C ZBTB14 Missense_Mutation p.T258R 0.22 tolerated(0.51) benign(0.193) TCGA-CV-7101-01 18 5291439 5291439 C G ZBTB14 Missense_Mutation p.W256C 0.22 tolerated(0.17) probably_damaging(0.994) TCGA-CV-7101-01 18 5394794 5394794 T A EPB41L3 Splice_Site p.X1052_splice 0.49 TCGA-CV-7101-01 18 60242731 60242731 C T ZCCHC2 Silent p.S1139S 0.25 TCGA-CV-7101-01 19 19243544 19243544 C T TMEM161A Missense_Mutation p.E70K 0.15 deleterious(0.04) possibly_damaging(0.7) TCGA-CV-7101-01 19 19655488 19655488 C T CILP2 Missense_Mutation p.R712C 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7101-01 19 22156525 22156525 G A ZNF208 Silent p.S437S 0.24 TCGA-CV-7101-01 19 22156838 22156838 G A ZNF208 Missense_Mutation p.A333V 0.41 tolerated(0.1) benign(0.065) TCGA-CV-7101-01 19 30165036 30165036 A C PLEKHF1 Missense_Mutation p.K97T 0.45 deleterious(0) probably_damaging(0.914) TCGA-CV-7101-01 19 31039643 31039643 C A ZNF536 Silent p.V1039V 0.27 TCGA-CV-7101-01 19 46280797 46280797 C T DMPK Missense_Mutation p.D322N 0.14 tolerated(0.08) benign(0.054) TCGA-CV-7101-01 19 49129107 49129107 G A SPHK2 Intron 0.17 TCGA-CV-7101-01 19 52954960 52954960 C A ZNF578 5'Flank 0.17 TCGA-CV-7101-01 19 53086647 53086647 G T ZNF701 Missense_Mutation p.K511N 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-CV-7101-01 19 54224338 54224338 C G MIR517B RNA 0.09 TCGA-CV-7101-01 19 54823182 54823182 G A LILRA5 Missense_Mutation p.P121S 0.25 tolerated(0.17) benign(0.387) TCGA-CV-7101-01 19 55286879 55286879 G T KIR2DL1 Missense_Mutation p.K211N 0.06 tolerated(0.38) benign(0) TCGA-CV-7101-01 19 55399565 55399565 C T FCAR Missense_Mutation p.L185F 0.32 tolerated(0.7) benign(0.29) TCGA-CV-7101-01 19 55501499 55501499 G T NLRP2 Nonsense_Mutation p.E826* 0.22 TCGA-CV-7101-01 19 56220313 56220313 C G NLRP9 Missense_Mutation p.D981H 0.11 deleterious(0.04) benign(0.003) TCGA-CV-7101-01 19 57327825 57327825 C A PEG3 Missense_Mutation p.C662F 0.23 tolerated(0.21) benign(0.038) TCGA-CV-7101-01 19 7685195 7685195 C A XAB2 Missense_Mutation p.Q744H 0.12 deleterious(0.04) benign(0.078) TCGA-CV-7101-01 19 8148207 8148207 G T FBN3 Nonsense_Mutation p.C2379* 0.19 TCGA-CV-7101-01 19 9296822 9296822 G A OR7D2 Missense_Mutation p.R122Q 0.07 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-CV-7101-01 1 104160645 104160645 G T AMY2A Missense_Mutation p.V80F 0.41 deleterious(0.02) possibly_damaging(0.751) TCGA-CV-7101-01 1 153954705 153954705 A C RAB13 Intron 0.27 TCGA-CV-7101-01 1 156142765 156142765 G A SEMA4A Missense_Mutation p.G428E 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-CV-7101-01 1 16272484 16272484 G A ZBTB17 Intron 0.24 TCGA-CV-7101-01 1 165860556 165860556 C G UCK2 Missense_Mutation p.S118C 0.23 tolerated(0.1) possibly_damaging(0.891) TCGA-CV-7101-01 1 186158872 186158872 G A HMCN1 Silent p.V5590V 0.37 TCGA-CV-7101-01 1 20005114 20005126 ACGAAGCACAGCA - HTR6 Frame_Shift_Del p.T257Gfs*4 0.34 TCGA-CV-7101-01 1 215847971 215847971 C T USH2A Missense_Mutation p.G4428S 0.07 probably_damaging(1) TCGA-CV-7101-01 1 218520300 218520300 C T TGFB2 Missense_Mutation p.A86V 0.37 tolerated(0.2) possibly_damaging(0.783) TCGA-CV-7101-01 1 226033041 226033041 G A EPHX1 Missense_Mutation p.R454Q 0.32 tolerated(0.65) benign(0.002) TCGA-CV-7101-01 1 236911018 236911018 T C ACTN2 Silent p.I486I 0.08 TCGA-CV-7101-01 1 237813233 237813233 C T RYR2 Silent p.A2523A 0.25 TCGA-CV-7101-01 1 238050710 238050710 G C ZP4 Missense_Mutation p.F235L 0.07 deleterious(0) probably_damaging(0.914) TCGA-CV-7101-01 1 240071149 240071149 G A CHRM3 Missense_Mutation p.R133Q 0.28 tolerated(0.44) benign(0.054) TCGA-CV-7101-01 1 242159451 242159451 C T MAP1LC3C 3'UTR 0.15 TCGA-CV-7101-01 1 242451674 242451674 G A PLD5 Missense_Mutation p.S162L 0.14 tolerated(0.08) benign(0.003) TCGA-CV-7101-01 1 246810610 246810610 C T CNST Silent p.A369A 0.30 TCGA-CV-7101-01 1 247614634 247614634 G A OR2B11 Silent p.L217L 0.12 TCGA-CV-7101-01 1 248059699 248059699 G A OR2W3 Missense_Mutation p.G271S 0.24 deleterious(0.03) possibly_damaging(0.483) TCGA-CV-7101-01 1 52498549 52498549 C A KTI12 Silent p.G295G 0.55 TCGA-CV-7101-01 1 66798150 66798150 G T PDE4B Intron 0.34 TCGA-CV-7101-01 1 66798151 66798151 C T PDE4B Intron 0.35 TCGA-CV-7101-01 1 77094302 77094302 T C ST6GALNAC3 Intron 0.33 TCGA-CV-7101-01 1 97771778 97771778 G C DPYD Missense_Mutation p.P712A 0.18 deleterious(0) probably_damaging(0.988) TCGA-CV-7101-01 20 23029759 23029759 T C THBD Missense_Mutation p.N128S 0.27 tolerated(0.67) benign(0) TCGA-CV-7101-01 20 23804655 23804655 C T CST2 3'UTR 0.21 TCGA-CV-7101-01 20 34214297 34214297 G A CPNE1 Missense_Mutation p.R499W 0.29 tolerated(0.05) possibly_damaging(0.677) TCGA-CV-7101-01 20 43929779 43929779 C T MATN4 Silent p.E284E 0.12 TCGA-CV-7101-01 21 10906865 10906865 G A TPTE 3'UTR 0.24 TCGA-CV-7101-01 21 37617523 37617523 G A DOPEY2 Missense_Mutation p.G1082D 0.10 tolerated(0.56) benign(0.004) TCGA-CV-7101-01 22 18384651 18384651 G A MICAL3 Silent p.T228T 0.19 TCGA-CV-7101-01 22 19344526 19344526 G T HIRA Silent p.S761S 0.08 TCGA-CV-7101-01 22 24640644 24640644 C G GGT5 Missense_Mutation p.G17A 0.08 tolerated(0.46) benign(0.036) TCGA-CV-7101-01 22 32198787 32198787 A T DEPDC5 Silent p.L348L 0.28 TCGA-CV-7101-01 22 42128529 42128529 G A MEI1 Missense_Mutation p.R418H 0.37 tolerated(0.11) benign(0.007) TCGA-CV-7101-01 22 50727541 50727541 C T PLXNB2 Missense_Mutation p.E367K 0.44 deleterious(0.01) probably_damaging(0.91) TCGA-CV-7101-01 2 1497685 1497685 A G TPO Missense_Mutation p.K627R 0.26 tolerated(0.67) benign(0.049) TCGA-CV-7101-01 2 179571656 179571656 G T TTN Silent p.T9689T 0.26 TCGA-CV-7101-01 2 179571657 179571657 G T TTN Missense_Mutation p.T9689N 0.26 TCGA-CV-7101-01 2 202744779 202744779 C A CDK15 Missense_Mutation p.L363M 0.22 tolerated(0.06) possibly_damaging(0.907) TCGA-CV-7101-01 2 219528721 219528721 G A RNF25 Missense_Mutation p.R447W 0.08 deleterious(0) possibly_damaging(0.591) TCGA-CV-7101-01 2 233198650 233198650 G A DIS3L2 Missense_Mutation p.R704H 0.09 deleterious(0) probably_damaging(1) TCGA-CV-7101-01 2 242035369 242035369 C T MTERFD2 3'UTR 0.06 TCGA-CV-7101-01 2 242035433 242035433 C T MTERFD2 Missense_Mutation p.D376N 0.07 deleterious_low_confidence(0) unknown(0) TCGA-CV-7101-01 2 73899462 73899462 G A ALMS1P RNA 0.22 TCGA-CV-7101-01 2 96953231 96953231 C T SNRNP200 Missense_Mutation p.E1144K 0.36 deleterious(0.01) possibly_damaging(0.461) TCGA-CV-7101-01 3 101476483 101476483 G A CEP97 Missense_Mutation p.V345I 0.18 tolerated(0.26) benign(0.028) TCGA-CV-7101-01 3 112648206 112648206 C G CD200R1 Missense_Mutation p.E117D 0.06 deleterious(0.01) benign(0.265) TCGA-CV-7101-01 3 113375488 113375488 A G KIAA2018 Missense_Mutation p.S1681P 0.73 probably_damaging(0.998) TCGA-CV-7101-01 3 121563320 121563320 A G EAF2 Missense_Mutation p.I43V 0.11 tolerated(0.45) benign(0.028) TCGA-CV-7101-01 3 122345843 122345843 A G PARP15 Silent p.A467A 0.14 TCGA-CV-7101-01 3 136221571 136221571 G T STAG1 Missense_Mutation p.H243N 0.13 tolerated(1) benign(0.001) TCGA-CV-7101-01 3 137889026 137889034 CAAAATGAC - DBR1 In_Frame_Del p.G135_F137del 0.08 TCGA-CV-7101-01 3 142278147 142278147 C T ATR Missense_Mutation p.E560K 0.12 tolerated_low_confidence(0.34) benign(0.002) TCGA-CV-7101-01 3 171451288 171451288 T C PLD1 Silent p.E184E 0.09 TCGA-CV-7101-01 3 179082171 179082171 C G MFN1 Missense_Mutation p.S208C 0.07 deleterious(0) probably_damaging(0.987) TCGA-CV-7101-01 3 182871533 182871533 G A LAMP3 Silent p.N232N 0.09 TCGA-CV-7101-01 3 184046477 184046477 C T EIF4G1 Missense_Mutation p.L1345F 0.04 deleterious(0) probably_damaging(1) TCGA-CV-7101-01 3 191888366 191888366 C T FGF12 Missense_Mutation p.R165H 0.04 deleterious(0.01) possibly_damaging(0.72) TCGA-CV-7101-01 3 195925231 195925231 G A ZDHHC19 Missense_Mutation p.L289F 0.16 tolerated(0.54) benign(0.154) TCGA-CV-7101-01 3 196612534 196612534 C T SENP5 Missense_Mutation p.P161L 0.07 tolerated_low_confidence(0.25) benign(0.005) TCGA-CV-7101-01 3 49946442 49946442 T C MON1A 3'UTR 0.30 TCGA-CV-7101-01 3 52723170 52723170 G A GNL3 Silent p.E163E 0.13 TCGA-CV-7101-01 3 88188518 88188518 C T ZNF654 Nonsense_Mutation p.Q20* 0.34 TCGA-CV-7101-01 4 122250599 122250599 T G QRFPR Missense_Mutation p.E389A 0.09 deleterious(0.02) benign(0.021) TCGA-CV-7101-01 4 153692050 153692050 C T TIGD4 Missense_Mutation p.G36D 0.07 deleterious(0) probably_damaging(0.993) TCGA-CV-7101-01 4 6302536 6302536 C T WFS1 Silent p.I338I 0.28 TCGA-CV-7101-01 4 83411227 83411227 G A TMEM150C Silent p.L176L 0.35 TCGA-CV-7101-01 4 89827587 89827587 G C FAM13A Silent p.P262P 0.07 TCGA-CV-7101-01 4 94145828 94145828 G A GRID2 Missense_Mutation p.E343K 0.34 tolerated(0.07) possibly_damaging(0.657) TCGA-CV-7101-01 5 112176386 112176386 G A APC Missense_Mutation p.E1699K 0.21 benign(0.066) TCGA-CV-7101-01 5 128359396 128359397 - A SLC27A6 Frame_Shift_Ins p.G419Rfs*24 0.23 TCGA-CV-7101-01 5 139876609 139876609 C G ANKHD1 Missense_Mutation p.P917R 0.42 unknown(0) TCGA-CV-7101-01 5 140201942 140201942 T G PCDHA5 Silent p.V194V 0.38 TCGA-CV-7101-01 5 140553578 140553578 G A PCDHB7 Missense_Mutation p.D388N 0.12 tolerated_low_confidence(0.42) benign(0.007) TCGA-CV-7101-01 5 156786087 156786087 C A CYFIP2 Silent p.I890I 0.40 TCGA-CV-7101-01 5 158588301 158588301 G T RNF145 Missense_Mutation p.H563Q 0.13 deleterious(0.01) possibly_damaging(0.864) TCGA-CV-7101-01 5 176395738 176395738 C G UIMC1 Missense_Mutation p.E340Q 0.46 deleterious(0.02) benign(0.398) TCGA-CV-7101-01 5 24593411 24593411 T G CDH10 Missense_Mutation p.L63F 0.15 deleterious(0) probably_damaging(0.992) TCGA-CV-7101-01 5 32312966 32312966 G A MTMR12 5'UTR 0.38 TCGA-CV-7101-01 5 5465121 5465121 C T KIAA0947 Missense_Mutation p.P1892S 0.18 tolerated(0.26) benign(0.023) TCGA-CV-7101-01 5 59894929 59894929 G T DEPDC1B Missense_Mutation p.N467K 0.36 tolerated(0.41) benign(0.001) TCGA-CV-7101-01 6 100838914 100838914 C T SIM1 Missense_Mutation p.A542T 0.07 tolerated_low_confidence(0.45) benign(0.047) TCGA-CV-7101-01 6 111498539 111498558 ATTGTCACTGCTGGCAGCAG - SLC16A10 Frame_Shift_Del p.I205Cfs*15 0.10 TCGA-CV-7101-01 6 112510314 112510314 A G LAMA4 Missense_Mutation p.I271T 0.15 deleterious(0.02) possibly_damaging(0.448) TCGA-CV-7101-01 6 118887417 118887417 T C CEP85L Missense_Mutation p.T102A 0.18 deleterious(0.04) possibly_damaging(0.599) TCGA-CV-7101-01 6 133049996 133049996 C A VNN3 Missense_Mutation p.G141W 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-7101-01 6 137815177 137815177 T C OLIG3 Missense_Mutation p.Q44R 0.35 tolerated(0.46) benign(0.112) TCGA-CV-7101-01 6 1742785 1742785 C A GMDS Missense_Mutation p.E269D 0.35 tolerated_low_confidence(0.7) benign(0.001) TCGA-CV-7101-01 6 18217997 18217997 C T KDM1B Missense_Mutation p.R524W 0.43 deleterious(0) unknown(0) TCGA-CV-7101-01 6 24706378 24706378 T C C6orf62 Missense_Mutation p.Y226C 0.52 deleterious_low_confidence(0.02) probably_damaging(0.923) TCGA-CV-7101-01 6 25701545 25701545 G T SCGN Silent p.G271G 0.39 TCGA-CV-7101-01 6 26468903 26468903 G T BTN2A1 3'UTR 0.24 TCGA-CV-7101-01 6 27805943 27805943 G C HIST1H2AK Missense_Mutation p.L59V 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.743) TCGA-CV-7101-01 6 32020624 32020624 C T TNXB Missense_Mutation p.D2978N 0.60 probably_damaging(0.913) TCGA-CV-7101-01 6 46107712 46107712 G A ENPP4 Missense_Mutation p.S131N 0.42 deleterious(0) probably_damaging(0.946) TCGA-CV-7101-01 6 56917579 56917579 C T KIAA1586 Silent p.S94S 0.20 TCGA-CV-7101-01 6 63990178 63990178 G A LGSN Silent p.A426A 0.20 TCGA-CV-7101-01 6 87725635 87725635 T A HTR1E Missense_Mutation p.L195M 0.21 tolerated(0.18) possibly_damaging(0.856) TCGA-CV-7101-01 7 100491265 100491265 C G ACHE Missense_Mutation p.E197Q 0.18 deleterious(0.01) possibly_damaging(0.708) TCGA-CV-7101-01 7 140125753 140125753 G T RAB19 Missense_Mutation p.G153C 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-CV-7101-01 7 154561126 154561126 G C DPP6 Splice_Site p.X295_splice 0.09 TCGA-CV-7101-01 7 21947962 21947962 T G CDCA7L Missense_Mutation p.K156T 0.08 tolerated(0.29) benign(0.002) TCGA-CV-7101-01 7 23809341 23809341 C A STK31 Nonsense_Mutation p.S560* 0.27 TCGA-CV-7101-01 7 38398165 38398165 T C TRGV3 Missense_Mutation p.Q101R 0.28 tolerated(1) benign(0.003) TCGA-CV-7101-01 7 43590145 43590145 C T HECW1 Silent p.R1450R 0.57 TCGA-CV-7101-01 7 80432017 80432017 C T SEMA3C Missense_Mutation p.D294N 0.08 deleterious(0.02) possibly_damaging(0.697) TCGA-CV-7101-01 7 82784624 82784624 C A PCLO Missense_Mutation p.G445W 0.34 probably_damaging(0.984) TCGA-CV-7101-01 7 98567840 98567840 C T TRRAP Missense_Mutation p.R2533C 0.23 possibly_damaging(0.676) TCGA-CV-7101-01 7 99128782 99128782 C G ZKSCAN5 Nonsense_Mutation p.S477* 0.07 TCGA-CV-7101-01 8 113585856 113585856 G A CSMD3 Silent p.L1306L 0.33 TCGA-CV-7101-01 8 121282288 121282288 A G COL14A1 Missense_Mutation p.K1030E 0.08 deleterious(0) benign(0.297) TCGA-CV-7101-01 8 136594129 136594129 G A KHDRBS3 Missense_Mutation p.G207E 0.27 deleterious(0.01) probably_damaging(0.981) TCGA-CV-7101-01 8 1719415 1719415 C T CLN8 Silent p.D65D 0.20 TCGA-CV-7101-01 8 20008242 20008242 C A SLC18A1 Missense_Mutation p.L343F 0.21 deleterious(0.02) probably_damaging(1) TCGA-CV-7101-01 8 2044180 2044180 C T MYOM2 Missense_Mutation p.S740L 0.43 deleterious(0) possibly_damaging(0.487) TCGA-CV-7101-01 8 23302048 23302048 C G ENTPD4 Missense_Mutation p.E162Q 0.05 tolerated(0.59) benign(0.007) TCGA-CV-7101-01 8 38005823 38005823 G C STAR Silent p.L67L 0.11 TCGA-CV-7101-01 8 38066593 38066593 A G BAG4 Silent p.S232S 0.21 TCGA-CV-7101-01 8 38280635 38280635 G A FGFR1 Intron 0.37 TCGA-CV-7101-01 8 64099527 64099527 C T YTHDF3 Nonsense_Mutation p.Q319* 0.24 TCGA-CV-7101-01 8 7320274 7320274 C T SPAG11B Missense_Mutation p.A57T 0.24 tolerated(0.16) benign(0.036) TCGA-CV-7101-01 9 116810994 116810994 A G ZNF618 Missense_Mutation p.E378G 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-7101-01 9 119495733 119495733 C T ASTN2 Silent p.E771E 0.28 TCGA-CV-7101-01 9 126132410 126132410 G A CRB2 Missense_Mutation p.D360N 0.23 tolerated(0.31) possibly_damaging(0.539) TCGA-CV-7101-01 9 13216781 13216781 T C MPDZ Missense_Mutation p.I428V 0.42 deleterious(0) probably_damaging(0.978) TCGA-CV-7101-01 9 139393659 139393659 G A NOTCH1 Missense_Mutation p.T1996M 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7101-01 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.46 TCGA-CV-7101-01 9 33927875 33927875 G A UBAP2 Missense_Mutation p.T764I 0.38 deleterious(0.03) unknown(0) TCGA-CV-7101-01 9 34310897 34310897 T C KIF24 Missense_Mutation p.K150E 0.18 tolerated(0.14) benign(0.018) TCGA-CV-7101-01 9 90582047 90582047 C T CDK20 3'UTR 0.16 TCGA-CV-7101-01 9 91617076 91617076 C T S1PR3 Missense_Mutation p.R321W 0.39 tolerated(0.05) benign(0.003) TCGA-CV-7101-01 X 10437743 10437743 C T MID1 Missense_Mutation p.V427I 0.35 tolerated(0.27) benign(0.009) TCGA-CV-7101-01 X 144337563 144337563 G T SPANXN1 3'UTR 0.26 TCGA-CV-7101-01 X 152483002 152483002 A T MAGEA1 Silent p.L3L 0.65 TCGA-CV-7101-01 X 3021856 3021856 C T ARSF Nonsense_Mutation p.R386* 0.50 TCGA-CV-7102-01 10 16911693 16911693 G A CUBN Silent p.F3132F 0.20 TCGA-CV-7102-01 11 33667250 33667250 G A KIAA1549L Missense_Mutation p.E1513K 0.23 deleterious(0.02) probably_damaging(0.974) TCGA-CV-7102-01 11 64508539 64508539 G A RASGRP2 Silent p.S84S 0.21 TCGA-CV-7102-01 11 64606237 64606237 T C CDC42BPG Silent p.E338E 0.29 TCGA-CV-7102-01 11 76813990 76813990 C T OMP Silent p.R35R 0.38 TCGA-CV-7102-01 12 101801473 101801473 C T ARL1 5'UTR 0.13 TCGA-CV-7102-01 12 117014215 117014215 T A MAP1LC3B2 3'UTR 0.42 TCGA-CV-7102-01 12 120172977 120172977 G A CIT Silent p.T1048T 0.16 TCGA-CV-7102-01 12 121691083 121691083 G C CAMKK2 Missense_Mutation p.S367C 0.06 deleterious(0.04) possibly_damaging(0.735) TCGA-CV-7102-01 12 124413860 124413860 G A DNAH10 Missense_Mutation p.M3997I 0.20 benign(0.21) TCGA-CV-7102-01 12 12870859 12870859 G T CDKN1B Missense_Mutation p.C29F 0.34 deleterious(0) probably_damaging(0.994) TCGA-CV-7102-01 12 21032551 21032551 C T SLCO1B3 Silent p.T439T 0.28 TCGA-CV-7102-01 12 21693480 21693480 C T GYS2 Missense_Mutation p.R558H 0.14 tolerated(0.06) possibly_damaging(0.795) TCGA-CV-7102-01 12 41421672 41421672 T A CNTN1 Silent p.P908P 0.39 TCGA-CV-7102-01 12 54115808 54115808 C T CALCOCO1 Splice_Site p.X203_splice 0.10 TCGA-CV-7102-01 12 54117433 54117433 C T CALCOCO1 Missense_Mutation p.E132K 0.12 tolerated(0.1) probably_damaging(0.973) TCGA-CV-7102-01 12 72680609 72680609 G A TRHDE Missense_Mutation p.V310M 0.39 tolerated(0.13) probably_damaging(0.93) TCGA-CV-7102-01 13 113030784 113030784 G A SPACA7 Missense_Mutation p.V29M 0.61 tolerated(0.52) benign(0.004) TCGA-CV-7102-01 14 52481133 52481133 G T NID2 Silent p.R1098R 0.42 TCGA-CV-7102-01 14 73408452 73408452 G C DCAF4 Splice_Site p.X118_splice 0.34 TCGA-CV-7102-01 14 94511065 94511065 G A OTUB2 Missense_Mutation p.R146Q 0.42 tolerated(0.13) benign(0.1) TCGA-CV-7102-01 14 96178699 96178699 C T TCL1A Missense_Mutation p.R52H 0.18 deleterious(0.04) possibly_damaging(0.626) TCGA-CV-7102-01 15 25456986 25456986 G A SNORD115-23 RNA 0.14 TCGA-CV-7102-01 15 45433157 45433157 G A DUOX1 Missense_Mutation p.G485E 0.25 deleterious(0) probably_damaging(0.996) TCGA-CV-7102-01 15 52632529 52632529 C A MYO5A Missense_Mutation p.R1368L 0.18 tolerated(0.15) benign(0.006) TCGA-CV-7102-01 15 56207900 56207900 G A NEDD4 Missense_Mutation p.S377L 0.12 tolerated_low_confidence(0.97) benign(0.173) TCGA-CV-7102-01 15 63978604 63978604 T C HERC1 Missense_Mutation p.Y2060C 0.35 possibly_damaging(0.653) TCGA-CV-7102-01 15 65888131 65888131 C T VWA9 Missense_Mutation p.D204N 0.17 deleterious(0) probably_damaging(0.993) TCGA-CV-7102-01 15 72244166 72244166 G A MYO9A Missense_Mutation p.H752Y 0.15 deleterious(0.03) probably_damaging(0.978) TCGA-CV-7102-01 15 72509817 72509817 G A PKM Missense_Mutation p.T60M 0.16 tolerated(1) benign(0.001) TCGA-CV-7102-01 15 72873104 72873104 C G ARIH1 Missense_Mutation p.F416L 0.13 deleterious(0.04) possibly_damaging(0.83) TCGA-CV-7102-01 16 2121792 2121792 G C TSC2 Missense_Mutation p.E652Q 0.18 deleterious(0.01) possibly_damaging(0.59) TCGA-CV-7102-01 16 2218133 2218133 C T TRAF7 Silent p.T65T 0.22 TCGA-CV-7102-01 16 30002132 30002132 G A TAOK2 3'Flank 0.16 TCGA-CV-7102-01 16 67660529 67660529 C T CTCF Missense_Mutation p.H477Y 0.19 deleterious(0.01) probably_damaging(0.968) TCGA-CV-7102-01 16 83159053 83159053 C T CDH13 Missense_Mutation p.P191S 0.33 deleterious(0.01) benign(0.015) TCGA-CV-7102-01 16 87365041 87365041 G A FBXO31 Silent p.F491F 0.31 TCGA-CV-7102-01 17 28811740 28811740 G C GOSR1 Missense_Mutation p.L100F 0.12 tolerated(0.62) benign(0.042) TCGA-CV-7102-01 17 30228654 30228654 G A UTP6 5'UTR 0.12 TCGA-CV-7102-01 17 36927374 36927374 T A PIP4K2B Missense_Mutation p.Y320F 0.27 tolerated(0.55) benign(0.002) TCGA-CV-7102-01 17 3716266 3716266 G A C17orf85 3'UTR 0.31 TCGA-CV-7102-01 17 39086308 39086308 C G KRT23 Missense_Mutation p.E174Q 0.17 deleterious(0) possibly_damaging(0.828) TCGA-CV-7102-01 17 41847077 41847077 A G DUSP3 Missense_Mutation p.I153T 0.16 tolerated(1) benign(0) TCGA-CV-7102-01 17 44626223 44626223 G C LRRC37A2 Missense_Mutation p.E1240Q 0.07 deleterious(0.03) benign(0.005) TCGA-CV-7102-01 17 63847958 63847958 C G CEP112 Missense_Mutation p.K786N 0.14 deleterious(0) benign(0.395) TCGA-CV-7102-01 17 7077514 7077514 G T ASGR1 Missense_Mutation p.D179E 0.40 tolerated(1) benign(0.003) TCGA-CV-7102-01 17 73258060 73258060 C G MRPS7 Missense_Mutation p.P27A 0.15 deleterious(0.01) possibly_damaging(0.611) TCGA-CV-7102-01 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.44 deleterious(0) probably_damaging(0.999) TCGA-CV-7102-01 17 8108663 8108663 C T AURKB Missense_Mutation p.M244I 0.18 deleterious(0.03) benign(0.323) TCGA-CV-7102-01 18 32457760 32457760 G C DTNA Missense_Mutation p.E574Q 0.17 tolerated(0.07) probably_damaging(0.919) TCGA-CV-7102-01 18 47107900 47107900 C T LIPG Silent p.F303F 0.12 TCGA-CV-7102-01 18 54358527 54358527 C G WDR7 Silent p.V266V 0.37 TCGA-CV-7102-01 19 13080346 13080346 G C DAND5 5'UTR 0.29 TCGA-CV-7102-01 19 17737530 17737530 T C UNC13A Missense_Mutation p.T1329A 0.36 tolerated(0.47) benign(0.114) TCGA-CV-7102-01 19 18778789 18778789 G C KLHL26 Missense_Mutation p.Q194H 0.15 tolerated(0.11) possibly_damaging(0.882) TCGA-CV-7102-01 19 19790800 19790800 A T ZNF101 Silent p.G334G 0.16 TCGA-CV-7102-01 19 21239886 21239886 G C ZNF430 Missense_Mutation p.E258Q 0.09 deleterious(0.03) possibly_damaging(0.572) TCGA-CV-7102-01 19 3452481 3452481 G T NFIC Silent p.G362G 0.22 TCGA-CV-7102-01 19 3586841 3586841 G A GIPC3 Silent p.R147R 0.27 TCGA-CV-7102-01 19 40408042 40408042 T A FCGBP Missense_Mutation p.D1560V 0.22 probably_damaging(0.995) TCGA-CV-7102-01 19 4552583 4552583 C T SEMA6B Silent p.K280K 0.43 TCGA-CV-7102-01 19 45916736 45916737 - T ERCC1 3'UTR 0.31 TCGA-CV-7102-01 19 46808523 46808523 C G HIF3A Missense_Mutation p.A80G 0.18 tolerated(0.21) benign(0.11) TCGA-CV-7102-01 19 54968931 54968931 G C LENG8 Missense_Mutation p.L579F 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-7102-01 19 57705330 57705330 G C ZNF264 Missense_Mutation p.E41Q 0.17 deleterious(0) probably_damaging(0.99) TCGA-CV-7102-01 19 58438232 58438232 G T ZNF418 Silent p.G439G 0.21 TCGA-CV-7102-01 19 7964812 7964812 C T AC010336.1 Nonsense_Mutation p.W152* 0.28 TCGA-CV-7102-01 1 12443108 12443108 T G VPS13D Missense_Mutation p.L3755W 0.32 probably_damaging(0.997) TCGA-CV-7102-01 1 155234561 155234561 C T CLK2 Missense_Mutation p.R312Q 0.47 tolerated(0.15) probably_damaging(0.997) TCGA-CV-7102-01 1 157062482 157062482 G C ETV3L Missense_Mutation p.L349V 0.08 deleterious_low_confidence(0.01) benign(0.074) TCGA-CV-7102-01 1 158817523 158817523 C T MNDA Silent p.S331S 0.18 TCGA-CV-7102-01 1 160147270 160147270 G A ATP1A4 Intron 0.15 TCGA-CV-7102-01 1 197115515 197115515 C T ASPM Missense_Mutation p.R18Q 0.16 tolerated(0.26) benign(0.026) TCGA-CV-7102-01 1 201981088 201981088 A G ELF3 Missense_Mutation p.K56R 0.38 tolerated(0.09) possibly_damaging(0.672) TCGA-CV-7102-01 1 202121757 202121757 G A PTPN7 Missense_Mutation p.S368L 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7102-01 1 21186878 21186878 C A EIF4G3 Missense_Mutation p.G1032C 0.26 deleterious(0) probably_damaging(0.995) TCGA-CV-7102-01 1 35919263 35919263 G C KIAA0319L Missense_Mutation p.A603G 0.17 deleterious(0) probably_damaging(0.993) TCGA-CV-7102-01 1 35919264 35919264 C G KIAA0319L Missense_Mutation p.A603P 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-CV-7102-01 1 43396789 43396789 G A SLC2A1 Missense_Mutation p.S68L 0.15 deleterious(0.04) possibly_damaging(0.582) TCGA-CV-7102-01 1 45243549 45243549 G T RPS8 Intron 0.11 TCGA-CV-7102-01 1 57378266 57378266 T G C8A Missense_Mutation p.L524W 0.12 deleterious(0.05) benign(0.137) TCGA-CV-7102-01 1 85656306 85656307 - A SYDE2 Frame_Shift_Ins p.Y292Lfs*9 0.23 TCGA-CV-7102-01 1 89616203 89616203 G T GBP7 Missense_Mutation p.F227L 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-CV-7102-01 20 13839936 13839936 A T SEL1L2 Intron 0.17 TCGA-CV-7102-01 21 33876236 33876236 G A EVA1C Missense_Mutation p.G287D 0.29 tolerated(0.31) benign(0.007) TCGA-CV-7102-01 21 38878577 38878577 G C DYRK1A Intron 0.17 TCGA-CV-7102-01 21 44521518 44521518 G A U2AF1 Intron 0.21 TCGA-CV-7102-01 21 45709685 45709685 C T AIRE Silent p.P266P 0.32 TCGA-CV-7102-01 22 20800823 20800823 C T KLHL22 Silent p.R482R 0.17 TCGA-CV-7102-01 22 41969737 41969737 C T CSDC2 Silent p.I85I 0.10 TCGA-CV-7102-01 2 114257054 114257054 T A FOXD4L1 Missense_Mutation p.I74N 0.29 tolerated(0.19) benign(0.002) TCGA-CV-7102-01 2 122038715 122038715 C T TFCP2L1 Silent p.T65T 0.14 TCGA-CV-7102-01 2 160085398 160085399 - A TANC1 Frame_Shift_Ins p.N1382Kfs*2 0.21 TCGA-CV-7102-01 2 162902113 162902113 C G DPP4 Missense_Mutation p.G99R 0.20 tolerated(0.1) benign(0.285) TCGA-CV-7102-01 2 179424503 179424503 C G TTN Missense_Mutation p.V28786L 0.28 TCGA-CV-7102-01 2 220286275 220286275 G T DES Nonsense_Mutation p.E413* 0.23 TCGA-CV-7102-01 2 27803074 27803074 C T C2orf16 Missense_Mutation p.T1212I 0.15 tolerated(0.13) benign(0.021) TCGA-CV-7102-01 2 44209427 44209427 C T LRPPRC Missense_Mutation p.R99H 0.16 deleterious(0) probably_damaging(0.996) TCGA-CV-7102-01 2 61711150 61711150 G A XPO1 Missense_Mutation p.P867S 0.15 tolerated(0.45) benign(0.051) TCGA-CV-7102-01 2 96993068 96993068 G C ITPRIPL1 Missense_Mutation p.Q241H 0.29 tolerated(0.62) benign(0.003) TCGA-CV-7102-01 3 111426919 111426919 G C PLCXD2 Missense_Mutation p.E104Q 0.14 tolerated(0.59) probably_damaging(0.993) TCGA-CV-7102-01 3 124165030 124165030 G T KALRN Missense_Mutation p.Q1110H 0.16 tolerated(0.06) possibly_damaging(0.906) TCGA-CV-7102-01 3 127395886 127395886 C T ABTB1 Silent p.L201L 0.22 TCGA-CV-7102-01 3 129275051 129275051 C G PLXND1 3'UTR 0.21 TCGA-CV-7102-01 3 138003316 138003316 A G ARMC8 Missense_Mutation p.K576R 0.32 tolerated(0.22) probably_damaging(0.997) TCGA-CV-7102-01 3 139173605 139173605 C T RBP2 Nonsense_Mutation p.W107* 0.16 TCGA-CV-7102-01 3 149683871 149683871 C G PFN2 3'UTR 0.27 TCGA-CV-7102-01 3 158363454 158363454 G A GFM1 Missense_Mutation p.V40M 0.16 tolerated(0.1) benign(0.114) TCGA-CV-7102-01 3 183824397 183824397 C T HTR3E Silent p.H455H 0.19 TCGA-CV-7102-01 3 197427812 197427812 C G KIAA0226 Missense_Mutation p.Q311H 0.12 tolerated(0.09) possibly_damaging(0.498) TCGA-CV-7102-01 3 43753250 43753250 G C ABHD5 Missense_Mutation p.D186H 0.16 tolerated(0.1) benign(0.019) TCGA-CV-7102-01 3 49412905 49412905 C G RHOA Missense_Mutation p.E40Q 0.18 deleterious(0.04) possibly_damaging(0.534) TCGA-CV-7102-01 4 113353568 113353568 G C ALPK1 Silent p.G955G 0.15 TCGA-CV-7102-01 4 122257976 122257976 C T QRFPR Missense_Mutation p.V183M 0.31 deleterious(0.04) possibly_damaging(0.883) TCGA-CV-7102-01 4 128753927 128753927 C G HSPA4L Missense_Mutation p.H806Q 0.15 tolerated(1) benign(0.008) TCGA-CV-7102-01 4 151388836 151388836 C T LRBA Missense_Mutation p.D2268N 0.12 deleterious(0) probably_damaging(0.998) TCGA-CV-7102-01 4 169611844 169611844 C T PALLD Missense_Mutation p.R476W 0.17 deleterious(0) probably_damaging(0.998) TCGA-CV-7102-01 4 175897744 175897744 G A ADAM29 Missense_Mutation p.M356I 0.14 deleterious(0) probably_damaging(0.998) TCGA-CV-7102-01 4 186382220 186382220 G A CCDC110 Missense_Mutation p.R111C 0.17 tolerated(0.09) benign(0.002) TCGA-CV-7102-01 4 186545017 186545017 C G SORBS2 Missense_Mutation p.Q618H 0.15 deleterious(0) probably_damaging(0.929) TCGA-CV-7102-01 4 20541203 20541203 A G SLIT2 Missense_Mutation p.T658A 0.20 deleterious(0.01) benign(0.065) TCGA-CV-7102-01 4 24801545 24801545 G A SOD3 Silent p.P134P 0.13 TCGA-CV-7102-01 4 2877732 2877732 G C ADD1 Missense_Mutation p.E30D 0.21 tolerated(0.12) probably_damaging(0.997) TCGA-CV-7102-01 4 44177085 44177085 G A KCTD8 Missense_Mutation p.H382Y 0.13 deleterious(0.05) benign(0.221) TCGA-CV-7102-01 4 56291664 56291664 A T TMEM165 3'UTR 0.18 TCGA-CV-7102-01 4 70513058 70513058 G A UGT2A1 Missense_Mutation p.S102L 0.15 tolerated(0.79) benign(0.004) TCGA-CV-7102-01 4 8021358 8021358 G C ABLIM2 Missense_Mutation p.I470M 0.19 deleterious(0.01) benign(0.252) TCGA-CV-7102-01 4 90857719 90857719 T C MMRN1 Missense_Mutation p.L963P 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-CV-7102-01 5 139838838 139838838 C G ANKHD1 Missense_Mutation p.L524V 0.19 unknown(0) TCGA-CV-7102-01 5 140580954 140580954 G A PCDHB11 Missense_Mutation p.R536H 0.34 deleterious_low_confidence(0.05) benign(0.052) TCGA-CV-7102-01 5 140589638 140589638 G A PCDHB12 Missense_Mutation p.E387K 0.19 deleterious_low_confidence(0.02) benign(0.057) TCGA-CV-7102-01 5 140589962 140589962 G A PCDHB12 Missense_Mutation p.D495N 0.11 deleterious_low_confidence(0.04) benign(0.33) TCGA-CV-7102-01 5 158524010 158524010 G T EBF1 Missense_Mutation p.A88E 0.32 deleterious(0.02) possibly_damaging(0.482) TCGA-CV-7102-01 5 160973365 160973365 C G GABRB2 Silent p.L44L 0.14 TCGA-CV-7102-01 5 161531032 161531032 G T GABRG2 Nonsense_Mutation p.G297* 0.31 TCGA-CV-7102-01 5 174868718 174868718 C T DRD1 3'UTR 0.20 TCGA-CV-7102-01 5 174868738 174868738 G T DRD1 3'UTR 0.23 TCGA-CV-7102-01 5 176943153 176943153 C A DDX41 Nonsense_Mutation p.E114* 0.16 TCGA-CV-7102-01 5 178358852 178358852 C A ZFP2 Missense_Mutation p.H180N 0.18 deleterious(0) probably_damaging(0.993) TCGA-CV-7102-01 5 7885832 7885832 C T MTRR Nonsense_Mutation p.Q335* 0.10 TCGA-CV-7102-01 6 110112620 110112620 C T FIG4 Missense_Mutation p.T741M 0.09 deleterious(0.01) benign(0.31) TCGA-CV-7102-01 6 122753414 122753414 C G HSF2 3'UTR 0.25 TCGA-CV-7102-01 6 129470160 129470160 G A LAMA2 Missense_Mutation p.D316N 0.14 deleterious(0.01) possibly_damaging(0.653) TCGA-CV-7102-01 6 31860266 31860266 T C EHMT2 Missense_Mutation p.E261G 0.18 deleterious_low_confidence(0.02) benign(0.051) TCGA-CV-7102-01 6 32808747 32808747 C A PSMB8 Missense_Mutation p.A274S 0.26 tolerated(0.2) benign(0.005) TCGA-CV-7102-01 6 64423243 64423243 G A PHF3 Missense_Mutation p.R1920H 0.36 deleterious(0) probably_damaging(0.943) TCGA-CV-7102-01 6 96052716 96052716 T G MANEA Missense_Mutation p.I223R 0.14 deleterious(0) probably_damaging(0.937) TCGA-CV-7102-01 7 107408304 107408304 C T SLC26A3 Silent p.V704V 0.28 TCGA-CV-7102-01 7 150772740 150772740 G T SLC4A2 Missense_Mutation p.V1117L 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7102-01 7 27134145 27134145 C T HOXA1 Missense_Mutation p.E308K 0.18 tolerated(0.09) possibly_damaging(0.502) TCGA-CV-7102-01 7 38305106 38305106 C A TRGC1 Nonsense_Mutation p.E59* 0.21 TCGA-CV-7102-01 7 43843400 43843400 G C BLVRA Missense_Mutation p.D196H 0.16 deleterious(0.02) possibly_damaging(0.494) TCGA-CV-7102-01 7 55233026 55233026 C T EGFR Silent p.V592V 0.04 TCGA-CV-7102-01 7 66456261 66456261 C G SBDS Missense_Mutation p.E163Q 0.21 tolerated(0.11) benign(0.178) TCGA-CV-7102-01 7 72717906 72717906 G A NSUN5 Silent p.L354L 0.23 TCGA-CV-7102-01 7 75172176 75172176 C A HIP1 Nonsense_Mutation p.E962* 0.19 TCGA-CV-7102-01 8 107782160 107782160 C T ABRA Missense_Mutation p.E87K 0.13 tolerated(0.55) benign(0.299) TCGA-CV-7102-01 8 110986443 110986443 A T KCNV1 Missense_Mutation p.C59S 0.38 tolerated(0.2) benign(0.007) TCGA-CV-7102-01 8 16026358 16026358 G A MSR1 Missense_Mutation p.T80M 0.41 tolerated(1) benign(0.017) TCGA-CV-7102-01 9 116022567 116022567 C T SLC31A1 Silent p.S129S 0.18 TCGA-CV-7102-01 9 34637427 34637427 G A SIGMAR1 Intron 0.50 TCGA-CV-7102-01 9 35380621 35380621 G A UNC13B Missense_Mutation p.V705I 0.26 deleterious(0) probably_damaging(0.959) TCGA-CV-7102-01 9 97522394 97522394 C T C9orf3 Missense_Mutation p.S110F 0.22 tolerated(0.14) benign(0.018) TCGA-CV-7102-01 X 100183244 100183244 G A XKRX Missense_Mutation p.S17L 0.27 deleterious(0.03) benign(0.014) TCGA-CV-7102-01 X 103267902 103267902 G C H2BFWT Missense_Mutation p.H111D 0.08 deleterious(0.01) possibly_damaging(0.673) TCGA-CV-7102-01 X 103267977 103267977 G A H2BFWT Missense_Mutation p.R86C 0.09 deleterious(0) possibly_damaging(0.761) TCGA-CV-7102-01 X 118220797 118220797 G T KIAA1210 Missense_Mutation p.L1466I 0.12 tolerated(0.65) benign(0.028) TCGA-CV-7102-01 X 129799651 129799651 C T ENOX2 Missense_Mutation p.R356Q 0.14 deleterious(0) possibly_damaging(0.492) TCGA-CV-7102-01 X 130678614 130678614 T G OR13H1 Silent p.S189S 0.17 TCGA-CV-7102-01 X 135431895 135431895 C G GPR112 Silent p.L2010L 0.12 TCGA-CV-7102-01 X 136649666 136649666 C T ZIC3 Silent p.F272F 0.09 TCGA-CV-7102-01 X 142967283 142967283 A G UBE2NL Silent p.P27P 0.29 TCGA-CV-7102-01 X 149963727 149963727 G A CD99L2 Nonsense_Mutation p.R128* 0.14 TCGA-CV-7102-01 X 151935346 151935346 C - MAGEA3 Frame_Shift_Del p.G274Vfs*11 0.12 TCGA-CV-7102-01 X 153736911 153736911 A T FAM3A Missense_Mutation p.Y57N 0.31 tolerated(0.16) possibly_damaging(0.861) TCGA-CV-7102-01 X 154033634 154033634 C T MPP1 Silent p.A5A 0.13 TCGA-CV-7102-01 X 17819548 17819548 G T RAI2 Missense_Mutation p.Q195K 0.16 tolerated(0.05) unknown(0) TCGA-CV-7102-01 X 17819549 17819549 G T RAI2 Silent p.S194S 0.16 TCGA-CV-7102-01 X 19983783 19983783 G C CXorf23 Nonsense_Mutation p.S218* 0.17 TCGA-CV-7102-01 X 23704511 23704511 A G PRDX4 3'UTR 0.26 TCGA-CV-7102-01 X 31947740 31947740 G C DMD Silent p.L2295L 0.16 TCGA-CV-7102-01 X 55479236 55479236 A G MAGEH1 Silent p.R143R 0.22 TCGA-CV-7102-01 X 70347742 70347742 G T MED12 Splice_Site p.X994_splice 0.31 TCGA-CV-7102-01 X 71681889 71681889 C G HDAC8 Missense_Mutation p.G324R 0.15 tolerated(0.07) benign(0.256) TCGA-CV-7102-01 X 73044042 73044042 G C XIST RNA 0.38 TCGA-CV-7102-01 X 73071873 73071873 C T XIST RNA 0.24 TCGA-CV-7103-01 10 11505354 11505354 C T USP6NL Missense_Mutation p.V542M 0.28 tolerated(0.19) benign(0.009) TCGA-CV-7103-01 10 115391662 115391662 G A NRAP Missense_Mutation p.A565V 0.41 deleterious(0.03) possibly_damaging(0.768) TCGA-CV-7103-01 10 97987176 97987176 G A BLNK Silent p.G117G 0.36 TCGA-CV-7103-01 11 124794765 124794765 G C HEPACAM Missense_Mutation p.R96G 0.36 tolerated(0.05) possibly_damaging(0.852) TCGA-CV-7103-01 11 47510570 47510570 C T CELF1 Silent p.K26K 0.10 TCGA-CV-7103-01 11 65402557 65402557 C T PCNXL3 Missense_Mutation p.A1640V 0.29 tolerated(0.43) benign(0.129) TCGA-CV-7103-01 12 49176996 49176996 G A ADCY6 Silent p.G74G 0.37 TCGA-CV-7103-01 12 56182870 56182870 T C SARNP Missense_Mutation p.I164V 0.29 tolerated(0.73) benign(0.001) TCGA-CV-7103-01 12 7025014 7025014 C T ENO2 Silent p.I6I 0.18 TCGA-CV-7103-01 13 39262438 39262438 G A FREM2 Silent p.K319K 0.49 TCGA-CV-7103-01 15 25417850 25417850 T A SNORD115-2 RNA 0.34 TCGA-CV-7103-01 15 68500464 68500464 C T CLN6 3'UTR 0.29 TCGA-CV-7103-01 15 72501133 72501133 G A PKM Missense_Mutation p.S222L 0.31 deleterious(0.01) benign(0.325) TCGA-CV-7103-01 16 2905603 2905603 G T PRSS22 Silent p.I177I 0.22 TCGA-CV-7103-01 17 37371437 37371437 G A STAC2 Silent p.G211G 0.36 TCGA-CV-7103-01 17 7578471 7578478 GGGCGGGG - TP53 Frame_Shift_Del p.P151Rfs*27 0.56 TCGA-CV-7103-01 18 47101893 47101893 C T LIPG Silent p.Y242Y 0.08 TCGA-CV-7103-01 19 10077031 10077031 C T COL5A3 Missense_Mutation p.G1581R 0.34 unknown(0) TCGA-CV-7103-01 19 10077032 10077032 C T COL5A3 Silent p.A1580A 0.39 TCGA-CV-7103-01 19 16902349 16902349 C G NWD1 Missense_Mutation p.I1043M 0.32 tolerated(0.17) benign(0.025) TCGA-CV-7103-01 19 20728546 20728546 G C ZNF737 Missense_Mutation p.H155D 0.37 tolerated(0.06) benign(0.315) TCGA-CV-7103-01 19 37733547 37733547 C G ZNF383 Missense_Mutation p.H137D 0.33 tolerated(0.09) benign(0.013) TCGA-CV-7103-01 19 40740869 40740869 C A AKT2 Intron 0.26 TCGA-CV-7103-01 19 43406456 43406456 T - PSG6 3'Flank 0.11 TCGA-CV-7103-01 19 56732960 56732960 T G ZSCAN5A Missense_Mutation p.E492A 0.37 deleterious(0.02) benign(0.293) TCGA-CV-7103-01 19 5691333 5691333 C G RPL36 Missense_Mutation p.L33V 0.35 deleterious(0.04) benign(0.211) TCGA-CV-7103-01 19 9074800 9074800 T G MUC16 Missense_Mutation p.S4216R 0.15 unknown(0) TCGA-CV-7103-01 1 10714479 10714479 C T CASZ1 Missense_Mutation p.C612Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-7103-01 1 150129105 150129105 G T PLEKHO1 Missense_Mutation p.A107S 0.13 deleterious(0.03) probably_damaging(0.983) TCGA-CV-7103-01 1 46726555 46726556 - AC RAD54L Frame_Shift_Ins p.K213Tfs*12 0.28 TCGA-CV-7103-01 1 53513618 53513618 G A SCP2 Intron 0.12 TCGA-CV-7103-01 1 67895933 67895933 G C SERBP1 Missense_Mutation p.F17L 0.52 deleterious(0) probably_damaging(0.983) TCGA-CV-7103-01 2 139429083 139429083 G A NXPH2 Silent p.P68P 0.33 TCGA-CV-7103-01 2 213878609 213878609 A C IKZF2 Missense_Mutation p.N254K 0.16 tolerated(0.93) benign(0.114) TCGA-CV-7103-01 2 37505102 37505102 C T PRKD3 Missense_Mutation p.M401I 0.13 deleterious(0.03) possibly_damaging(0.71) TCGA-CV-7103-01 3 142176456 142176456 G T ATR Missense_Mutation p.P2549T 0.51 tolerated(0.27) probably_damaging(0.94) TCGA-CV-7103-01 3 183960340 183960340 A G ALG3 Missense_Mutation p.F427L 0.21 tolerated(0.68) benign(0) TCGA-CV-7103-01 3 185363333 185363333 G A IGF2BP2 Nonsense_Mutation p.Q596* 0.68 TCGA-CV-7103-01 4 1332207 1332207 C T MAEA Intron 0.13 TCGA-CV-7103-01 4 159620266 159620266 A G ETFDH Missense_Mutation p.N367S 0.52 tolerated(0.18) probably_damaging(0.997) TCGA-CV-7103-01 4 187517826 187517826 C A FAT1 Nonsense_Mutation p.E4290* 0.65 TCGA-CV-7103-01 4 46388201 46388201 A G GABRA2 Missense_Mutation p.V26A 0.33 tolerated_low_confidence(0.28) benign(0.003) TCGA-CV-7103-01 4 57896547 57896547 C T POLR2B Silent p.G1139G 0.44 TCGA-CV-7103-01 4 755159 755159 G A PCGF3 Silent p.L185L 0.08 TCGA-CV-7103-01 5 132037805 132037805 C G KIF3A Missense_Mutation p.D593H 0.54 deleterious(0.01) possibly_damaging(0.707) TCGA-CV-7103-01 5 14716943 14716944 - G ANKH Frame_Shift_Ins p.L338Pfs*13 0.33 TCGA-CV-7103-01 5 180335857 180335857 G T BTNL8 Missense_Mutation p.L107F 0.06 deleterious(0.05) possibly_damaging(0.873) TCGA-CV-7103-01 5 180335874 180335874 G T BTNL8 Missense_Mutation p.G113V 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-7103-01 5 38464067 38464067 C G EGFLAM Missense_Mutation p.I1011M 0.06 deleterious(0) probably_damaging(0.998) TCGA-CV-7103-01 6 13230292 13230292 A C PHACTR1 Silent p.R420R 0.40 TCGA-CV-7103-01 6 83866921 83866941 CGTTTGCCACAGGTGCCAACT - DOPEY1 In_Frame_Del p.R2209_T2215del 0.21 TCGA-CV-7103-01 7 44747333 44747333 C G OGDH Silent p.V983V 0.35 TCGA-CV-7103-01 7 55210002 55210002 C G EGFR Missense_Mutation p.L38V 0.32 deleterious(0.01) possibly_damaging(0.85) TCGA-CV-7103-01 8 30705568 30705568 A T TEX15 Missense_Mutation p.D322E 0.32 tolerated(0.07) benign(0.42) TCGA-CV-7103-01 9 136132874 136132874 G A RP11-430N14.4 5'Flank 0.46 TCGA-CV-7103-01 X 100911661 100911661 T C ARMCX2 Missense_Mutation p.D305G 0.67 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-7103-01 X 134483238 134483238 T G ZNF449 Silent p.P186P 0.29 TCGA-CV-7103-01 X 153420103 153420103 C A OPN1LW Missense_Mutation p.S211R 0.67 deleterious(0.01) possibly_damaging(0.694) TCGA-CV-7104-01 10 135367712 135367712 T A SYCE1 3'Flank 0.26 TCGA-CV-7104-01 10 135367713 135367713 C G SYCE1 3'Flank 0.26 TCGA-CV-7104-01 10 48388506 48388506 G A RBP3 Missense_Mutation p.T791M 0.32 deleterious(0) probably_damaging(0.938) TCGA-CV-7104-01 10 64966567 64966567 G A JMJD1C Missense_Mutation p.T1621I 0.25 deleterious(0.01) possibly_damaging(0.844) TCGA-CV-7104-01 10 70992576 70992576 G T HKDC1 Missense_Mutation p.V95L 0.26 deleterious(0) possibly_damaging(0.557) TCGA-CV-7104-01 10 90665316 90665316 A G STAMBPL1 Silent p.R49R 0.31 TCGA-CV-7104-01 10 93619309 93619309 C T TNKS2 Missense_Mutation p.A1062V 0.27 deleterious(0) benign(0.004) TCGA-CV-7104-01 10 99228076 99228076 C T MMS19 Missense_Mutation p.R384Q 0.22 tolerated(0.06) possibly_damaging(0.787) TCGA-CV-7104-01 11 103780240 103780240 G A PDGFD 3'UTR 0.24 TCGA-CV-7104-01 11 113684554 113684554 G T USP28 Intron 0.22 TCGA-CV-7104-01 11 1956071 1956071 G A TNNT3 Silent p.K201K 0.23 TCGA-CV-7104-01 11 31312208 31312208 C A DCDC1 Nonsense_Mutation p.E316* 0.21 TCGA-CV-7104-01 11 3681420 3681420 G T ART1 Missense_Mutation p.C224F 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7104-01 11 45967551 45967551 C T PHF21A Missense_Mutation p.R430H 0.22 deleterious(0.02) possibly_damaging(0.827) TCGA-CV-7104-01 11 55540981 55540981 C T OR5D13 Missense_Mutation p.P23L 0.07 deleterious(0.02) benign(0.295) TCGA-CV-7104-01 11 65396095 65396095 C T PCNXL3 Silent p.F1244F 0.27 TCGA-CV-7104-01 12 108618515 108618515 G T WSCD2 Splice_Site p.X228_splice 0.19 TCGA-CV-7104-01 12 10954441 10954443 GAG - TAS2R7 In_Frame_Del p.L243del 0.20 TCGA-CV-7104-01 12 124798965 124798965 C A FAM101A Missense_Mutation p.T101N 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-CV-7104-01 12 58021971 58021971 G A B4GALNT1 Silent p.F359F 0.18 TCGA-CV-7104-01 12 993920 993920 A G WNK1 Missense_Mutation p.E1317G 0.34 deleterious(0) probably_damaging(0.954) TCGA-CV-7104-01 13 45010654 45010654 C T TSC22D1 Intron 0.15 TCGA-CV-7104-01 14 19553628 19553628 G T POTEG Missense_Mutation p.W71L 0.08 deleterious_low_confidence(0) benign(0.007) TCGA-CV-7104-01 14 31814337 31814337 C T HEATR5A Missense_Mutation p.R712H 0.23 deleterious(0) probably_damaging(0.968) TCGA-CV-7104-01 14 53010231 53010231 G C TXNDC16 Silent p.V15V 0.23 TCGA-CV-7104-01 15 22382574 22382574 C A OR4N4 Missense_Mutation p.F34L 0.39 tolerated(0.25) probably_damaging(0.995) TCGA-CV-7104-01 15 45047401 45047401 A T TRIM69 Nonsense_Mutation p.K104* 0.42 TCGA-CV-7104-01 15 59806519 59806519 C A FAM81A Missense_Mutation p.Q228K 0.34 deleterious(0.01) benign(0.133) TCGA-CV-7104-01 15 89864134 89864134 G A POLG Silent p.I948I 0.31 TCGA-CV-7104-01 16 3406177 3406177 C G OR2C1 Silent p.P79P 0.55 TCGA-CV-7104-01 16 50259097 50259097 T - PAPD5 Frame_Shift_Del p.C552* 0.19 TCGA-CV-7104-01 16 58552079 58552079 A G SETD6 Missense_Mutation p.N306S 0.25 tolerated(0.05) probably_damaging(0.991) TCGA-CV-7104-01 16 72094489 72094489 C T HP Silent p.D307D 0.26 TCGA-CV-7104-01 16 81197274 81197274 G A PKD1L2 RNA 0.38 TCGA-CV-7104-01 16 84088086 84088086 G T MBTPS1 Missense_Mutation p.Q1043K 0.22 tolerated_low_confidence(0.72) benign(0.018) TCGA-CV-7104-01 17 10362627 10362627 C T MYH4 Missense_Mutation p.E510K 0.19 deleterious(0.02) benign(0.124) TCGA-CV-7104-01 17 2200598 2200598 T A SMG6 Missense_Mutation p.K697M 0.25 deleterious(0) possibly_damaging(0.897) TCGA-CV-7104-01 17 27402057 27402058 - A TIAF1 5'UTR 0.31 TCGA-CV-7104-01 17 34945780 34945780 G A GGNBP2 Missense_Mutation p.R678Q 0.28 deleterious_low_confidence(0.02) benign(0.018) TCGA-CV-7104-01 17 35800747 35800747 A G TADA2A Silent p.T142T 0.12 TCGA-CV-7104-01 17 37817129 37817129 G A STARD3 Missense_Mutation p.V341M 0.27 deleterious(0.03) benign(0.018) TCGA-CV-7104-01 17 4937188 4937188 G T SLC52A1 Missense_Mutation p.A199E 0.29 deleterious(0.01) benign(0.123) TCGA-CV-7104-01 17 65914934 65914934 G T BPTF Missense_Mutation p.G1803V 0.30 probably_damaging(1) TCGA-CV-7104-01 17 73201850 73201850 C G NUP85 5'UTR 0.26 TCGA-CV-7104-01 17 7577609 7577609 C T TP53 Splice_Site p.X225_splice 0.24 TCGA-CV-7104-01 17 7579575 7579575 G A TP53 Nonsense_Mutation p.Q38* 0.22 TCGA-CV-7104-01 19 12822400 12822400 C T TNPO2 Missense_Mutation p.M306I 0.21 deleterious(0.02) possibly_damaging(0.47) TCGA-CV-7104-01 19 2810358 2810358 G A THOP1 Silent p.P504P 0.41 TCGA-CV-7104-01 19 35633258 35633258 C T FXYD1 Intron 0.30 TCGA-CV-7104-01 19 37309438 37309438 T A ZNF790 Missense_Mutation p.N603I 0.26 tolerated(0.12) benign(0.057) TCGA-CV-7104-01 19 48945466 48945466 G A GRIN2D Missense_Mutation p.E834K 0.27 deleterious(0.04) probably_damaging(0.996) TCGA-CV-7104-01 19 59028060 59028060 C T ZBTB45 Silent p.P327P 0.37 TCGA-CV-7104-01 19 9048464 9048464 C A MUC16 Missense_Mutation p.S11056I 0.20 benign(0.027) TCGA-CV-7104-01 1 115267850 115267850 G A CSDE1 Missense_Mutation p.T628I 0.26 tolerated(0.57) benign(0.002) TCGA-CV-7104-01 1 13001212 13001212 G T PRAMEF6 Missense_Mutation p.N157K 0.12 tolerated(0.43) benign(0.318) TCGA-CV-7104-01 1 13942431 13942431 G T PDPN 3'UTR 0.23 TCGA-CV-7104-01 1 152005278 152005278 G A S100A11 Missense_Mutation p.L60F 0.16 tolerated(0.06) possibly_damaging(0.689) TCGA-CV-7104-01 1 153905172 153905172 G A DENND4B Silent p.D1235D 0.27 TCGA-CV-7104-01 1 16475417 16475418 - CGCT EPHA2 Frame_Shift_Ins p.I94Afs*5 0.50 TCGA-CV-7104-01 1 169345895 169345895 G C BLZF1 Missense_Mutation p.S49T 0.22 tolerated_low_confidence(0.1) benign(0.146) TCGA-CV-7104-01 1 172411603 172411603 C T PIGC Missense_Mutation p.E54K 0.22 deleterious(0.01) probably_damaging(0.92) TCGA-CV-7104-01 1 216462695 216462695 G C USH2A Missense_Mutation p.S633W 0.23 benign(0.193) TCGA-CV-7104-01 1 240492663 240492663 C A FMN2 Silent p.I1444I 0.19 TCGA-CV-7104-01 1 33237578 33237578 C - KIAA1522 Frame_Shift_Del p.A933Gfs*172 0.29 TCGA-CV-7104-01 1 35578796 35578798 TAT - ZMYM1 In_Frame_Del p.I456del 0.46 TCGA-CV-7104-01 1 40525048 40525048 A T CAP1 Missense_Mutation p.R10S 0.25 deleterious(0) probably_damaging(0.951) TCGA-CV-7104-01 1 40661333 40661333 G A RLF Silent p.G168G 0.26 TCGA-CV-7104-01 1 40661334 40661334 A T RLF Missense_Mutation p.N169Y 0.27 deleterious(0) probably_damaging(0.962) TCGA-CV-7104-01 1 46658985 46658985 C T POMGNT1 Missense_Mutation p.V368M 0.35 probably_damaging(0.982) TCGA-CV-7104-01 1 77984359 77984359 G T AK5 Nonsense_Mutation p.E420* 0.27 TCGA-CV-7104-01 1 9804038 9804038 G C CLSTN1 Silent p.L420L 0.32 TCGA-CV-7104-01 20 3193868 3193868 T G ITPA Missense_Mutation p.I40M 0.32 deleterious(0.02) possibly_damaging(0.681) TCGA-CV-7104-01 20 37357005 37357005 C T SLC32A1 Missense_Mutation p.T434M 0.25 tolerated(0.21) benign(0.069) TCGA-CV-7104-01 22 31520883 31520883 C T INPP5J Missense_Mutation p.S53L 0.22 tolerated(0.4) benign(0) TCGA-CV-7104-01 22 38258977 38258977 G A EIF3L Missense_Mutation p.G146E 0.28 deleterious_low_confidence(0.03) benign(0.339) TCGA-CV-7104-01 22 39096038 39096038 T C JOSD1 5'UTR 0.33 TCGA-CV-7104-01 2 107459965 107459965 C T ST6GAL2 Missense_Mutation p.G157S 0.29 benign(0.011) TCGA-CV-7104-01 2 155711297 155711297 T - KCNJ3 Frame_Shift_Del p.P329Lfs*2 0.28 TCGA-CV-7104-01 2 16082160 16082160 C G MYCN 5'UTR 0.26 TCGA-CV-7104-01 2 206265816 206265816 G C PARD3B Missense_Mutation p.E842Q 0.18 deleterious(0) probably_damaging(0.957) TCGA-CV-7104-01 2 210518097 210518097 C G MAP2 Nonsense_Mutation p.S68* 0.29 TCGA-CV-7104-01 2 28634924 28634925 - GC FOSL2 Frame_Shift_Ins p.R199Afs*22 0.25 TCGA-CV-7104-01 3 132166224 132166224 C T DNAJC13 Silent p.F68F 0.15 TCGA-CV-7104-01 3 158363475 158363475 C T GFM1 Nonsense_Mutation p.R47* 0.33 TCGA-CV-7104-01 3 167183380 167183380 C A SERPINI2 Missense_Mutation p.G187V 0.28 deleterious(0) probably_damaging(0.936) TCGA-CV-7104-01 3 167183382 167183382 T C SERPINI2 Silent p.K186K 0.30 TCGA-CV-7104-01 3 168838947 168838947 G T MECOM Silent p.V220V 0.27 TCGA-CV-7104-01 3 184104380 184104380 C T CHRD Missense_Mutation p.A678V 0.23 tolerated(0.45) benign(0.003) TCGA-CV-7104-01 3 196664503 196664503 C G NCBP2 Missense_Mutation p.D93H 0.21 deleterious(0.02) possibly_damaging(0.54) TCGA-CV-7104-01 3 50356381 50356389 GCTTACCGT - HYAL2 Splice_Site p.X337_splice 0.29 TCGA-CV-7104-01 4 2934445 2934445 C T MFSD10 Missense_Mutation p.R138Q 0.20 tolerated(0.19) benign(0.254) TCGA-CV-7104-01 4 42445599 42445599 G T ATP8A1 Missense_Mutation p.P1036T 0.29 tolerated(0.22) probably_damaging(0.991) TCGA-CV-7104-01 4 47605597 47605597 T C CORIN Missense_Mutation p.T877A 0.06 tolerated(0.35) benign(0.213) TCGA-CV-7104-01 5 139781714 139781714 G A ANKHD1 Silent p.S54S 0.64 TCGA-CV-7104-01 5 140615543 140615543 G A PCDHB18 RNA 0.19 TCGA-CV-7104-01 5 140789785 140789785 G A PCDHGB6 Silent p.L672L 0.55 TCGA-CV-7104-01 5 142675046 142675046 T G NR3C1 Missense_Mutation p.T669P 0.18 deleterious(0.01) probably_damaging(0.958) TCGA-CV-7104-01 5 150929062 150929062 C T FAT2 Missense_Mutation p.R1528Q 0.68 probably_damaging(1) TCGA-CV-7104-01 5 167850580 167850580 C G WWC1 Silent p.P439P 0.22 TCGA-CV-7104-01 5 21752115 21752115 G T CDH12 Missense_Mutation p.P706T 0.21 tolerated(0.29) benign(0.004) TCGA-CV-7104-01 5 33576387 33576387 C A ADAMTS12 Silent p.L1248L 0.24 TCGA-CV-7104-01 5 36066838 36066838 C A UGT3A2 Silent p.L18L 0.42 TCGA-CV-7104-01 5 7396480 7396480 A T ADCY2 Missense_Mutation p.D24V 0.41 deleterious_low_confidence(0.04) benign(0) TCGA-CV-7104-01 6 134495871 134495871 G A SGK1 Intron 0.24 TCGA-CV-7104-01 6 31132578 31132580 GTT - POU5F1 In_Frame_Del p.Q294del 0.27 TCGA-CV-7104-01 6 31765655 31765655 G A LSM2 Missense_Mutation p.S56L 0.23 tolerated(0.08) benign(0.178) TCGA-CV-7104-01 6 36746628 36746628 C A CPNE5 Intron 0.21 TCGA-CV-7104-01 6 38843598 38843598 G A DNAH8 Missense_Mutation p.D2401N 0.41 benign(0.006) TCGA-CV-7104-01 6 56993596 56993596 G A ZNF451 Missense_Mutation p.E128K 0.32 tolerated(0.05) probably_damaging(0.993) TCGA-CV-7104-01 7 141673457 141673457 G C TAS2R38 Silent p.S11S 0.23 TCGA-CV-7104-01 7 144075958 144075958 C A ARHGEF5 Missense_Mutation p.D1545E 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7104-01 7 148979254 148979254 C G ZNF783 Missense_Mutation p.I487M 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-CV-7104-01 7 150693876 150693876 C T NOS3 Missense_Mutation p.R149W 0.18 deleterious(0) probably_damaging(1) TCGA-CV-7104-01 7 38357071 38357071 G C TRGV9 Nonsense_Mutation p.S8* 0.24 TCGA-CV-7104-01 7 72884760 72884760 C A BAZ1B Missense_Mutation p.A883S 0.37 tolerated(0.18) benign(0.437) TCGA-CV-7104-01 8 116631947 116631947 G C TRPS1 Missense_Mutation p.F126L 0.19 tolerated_low_confidence(0.23) benign(0.027) TCGA-CV-7104-01 8 145737407 145737407 C T RECQL4 Missense_Mutation p.E1094K 0.14 tolerated(0.08) benign(0.048) TCGA-CV-7104-01 8 196070 196070 G A ZNF596 Missense_Mutation p.R408Q 0.34 tolerated(0.74) possibly_damaging(0.526) TCGA-CV-7104-01 8 66539564 66539564 G C ARMC1 Missense_Mutation p.L24V 0.15 deleterious(0) possibly_damaging(0.632) TCGA-CV-7104-01 8 70570762 70570762 G T SULF1 Nonsense_Mutation p.E870* 0.50 TCGA-CV-7104-01 8 95677422 95677422 G T ESRP1 Missense_Mutation p.G310V 0.26 deleterious(0.02) possibly_damaging(0.814) TCGA-CV-7104-01 8 95677423 95677423 T A ESRP1 Silent p.G310G 0.24 TCGA-CV-7104-01 9 101552849 101552849 G A ANKS6 Silent p.H133H 0.26 TCGA-CV-7104-01 9 101980890 101980890 G C ALG2 Missense_Mutation p.H193D 0.12 tolerated(0.54) benign(0.002) TCGA-CV-7104-01 9 116840403 116840403 G C AMBP Missense_Mutation p.I29M 0.11 deleterious(0.01) benign(0.4) TCGA-CV-7104-01 9 125316206 125316206 A C OR1N2 Missense_Mutation p.K253T 0.30 deleterious(0) possibly_damaging(0.875) TCGA-CV-7104-01 9 130269539 130269539 G A FAM129B Missense_Mutation p.S609L 0.08 deleterious(0.02) benign(0.017) TCGA-CV-7104-01 9 130572339 130572339 A G FPGS Missense_Mutation p.N414S 0.26 deleterious(0.02) possibly_damaging(0.508) TCGA-CV-7104-01 9 21968186 21968186 G A CDKN2A 3'UTR 0.48 TCGA-CV-7104-01 9 32633291 32633291 C T TAF1L Missense_Mutation p.E763K 0.07 deleterious(0) possibly_damaging(0.555) TCGA-CV-7104-01 9 35906246 35906246 G A HRCT1 5'UTR 0.11 TCGA-CV-7104-01 9 72047505 72047505 C T APBA1 Missense_Mutation p.V797M 0.33 deleterious(0) probably_damaging(1) TCGA-CV-7104-01 9 74347385 74347385 C T TMEM2 Missense_Mutation p.R482K 0.11 deleterious(0.04) benign(0.275) TCGA-CV-7104-01 X 15845325 15845325 G A AP1S2 3'UTR 0.46 TCGA-CV-7104-01 X 39932420 39932420 G T BCOR Missense_Mutation p.P727T 0.35 deleterious(0) possibly_damaging(0.715) TCGA-CV-7104-01 X 50119800 50119800 G A DGKK RNA 0.39 TCGA-CV-7177-01 10 52566421 52566421 G C A1CF 3'UTR 0.25 TCGA-CV-7177-01 10 68687181 68687181 G A LRRTM3 Silent p.L169L 0.23 TCGA-CV-7177-01 10 73590951 73590951 A C PSAP Missense_Mutation p.S103A 0.31 tolerated(0.25) benign(0.07) TCGA-CV-7177-01 10 76993922 76993922 C T COMTD1 Missense_Mutation p.R233Q 0.28 tolerated(0.06) benign(0.038) TCGA-CV-7177-01 10 82280438 82280438 G A TSPAN14 3'UTR 0.33 TCGA-CV-7177-01 10 88451696 88451696 G A LDB3 Missense_Mutation p.V313I 0.05 tolerated(0.34) possibly_damaging(0.902) TCGA-CV-7177-01 11 1026050 1026050 C G MUC6 Missense_Mutation p.D880H 0.27 unknown(0) TCGA-CV-7177-01 11 123597653 123597653 C G ZNF202 Silent p.L333L 0.04 TCGA-CV-7177-01 11 15222416 15222416 T G INSC Missense_Mutation p.F294C 0.06 deleterious(0.05) possibly_damaging(0.688) TCGA-CV-7177-01 11 40137416 40137416 C T LRRC4C Missense_Mutation p.A143T 0.30 deleterious(0.04) probably_damaging(0.955) TCGA-CV-7177-01 11 4406682 4406684 AGA - TRIM21 In_Frame_Del p.F420del 0.41 TCGA-CV-7177-01 11 64359366 64359366 C T SLC22A12 Missense_Mutation p.T113M 0.40 deleterious(0) probably_damaging(0.958) TCGA-CV-7177-01 12 108006645 108006645 A G BTBD11 Missense_Mutation p.E633G 0.55 deleterious(0.01) probably_damaging(0.99) TCGA-CV-7177-01 12 122710578 122710578 G A DIABLO 5'UTR 0.36 TCGA-CV-7177-01 12 20885884 20885884 G T SLCO1C1 Missense_Mutation p.G410W 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7177-01 12 27824450 27824450 T G PPFIBP1 Silent p.T428T 0.10 TCGA-CV-7177-01 12 42554578 42554585 GTAACTTC - YAF2 Frame_Shift_Del p.E141Cfs*12 0.12 TCGA-CV-7177-01 12 53007615 53007616 GG - KRT73 Frame_Shift_Del p.I282Qfs*23 0.07 TCGA-CV-7177-01 12 57640658 57640659 AC - STAC3 Frame_Shift_Del p.F178* 0.23 TCGA-CV-7177-01 12 57975223 57975223 C T KIF5A Silent p.Y927Y 0.11 TCGA-CV-7177-01 12 70048856 70048856 G C BEST3 Missense_Mutation p.S613C 0.33 deleterious_low_confidence(0.04) benign(0.235) TCGA-CV-7177-01 14 105609208 105609208 C T JAG2 Missense_Mutation p.E1181K 0.58 tolerated(0.47) benign(0.353) TCGA-CV-7177-01 14 23450563 23450563 C - AJUBA Frame_Shift_Del p.E305Sfs*105 0.30 TCGA-CV-7177-01 14 24040391 24040391 C G JPH4 Missense_Mutation p.E517Q 0.09 deleterious(0.05) probably_damaging(0.954) TCGA-CV-7177-01 14 94931144 94931144 T C SERPINA9 Missense_Mutation p.N335S 0.35 deleterious(0) benign(0.038) TCGA-CV-7177-01 15 30011211 30011211 G A TJP1 Silent p.Y1045Y 0.30 TCGA-CV-7177-01 15 31294599 31294599 T C TRPM1 Missense_Mutation p.Y1452C 0.32 tolerated_low_confidence(0.11) benign(0.003) TCGA-CV-7177-01 15 85164140 85164140 C T ZSCAN2 Silent p.I238I 0.11 TCGA-CV-7177-01 15 91544674 91544674 A C VPS33B Missense_Mutation p.F475C 0.09 deleterious(0.03) possibly_damaging(0.779) TCGA-CV-7177-01 16 11348914 11348914 C T SOCS1 Missense_Mutation p.R141H 0.10 deleterious(0.02) benign(0.015) TCGA-CV-7177-01 16 27237111 27237111 G A NSMCE1 Silent p.Y219Y 0.28 TCGA-CV-7177-01 16 55539340 55539340 T C MMP2 Missense_Mutation p.W657R 0.04 deleterious(0.01) probably_damaging(1) TCGA-CV-7177-01 16 69782153 69782153 C T NOB1 Missense_Mutation p.R269H 0.12 deleterious(0) probably_damaging(0.993) TCGA-CV-7177-01 16 76572217 76572217 C G CNTNAP4 Missense_Mutation p.S994C 0.11 deleterious(0) probably_damaging(1) TCGA-CV-7177-01 16 87724057 87724057 C T JPH3 Silent p.F697F 0.53 TCGA-CV-7177-01 17 10298660 10298660 C G MYH8 Missense_Mutation p.E1584D 0.14 deleterious(0.04) possibly_damaging(0.852) TCGA-CV-7177-01 17 34340342 34340342 G T CCL23 Silent p.L103L 0.38 TCGA-CV-7177-01 17 40093075 40093075 G A TTC25 RNA 0.27 TCGA-CV-7177-01 17 45820480 45820480 G A TBX21 Silent p.A230A 0.38 TCGA-CV-7177-01 17 57958324 57958324 C T TUBD1 Silent p.Q156Q 0.18 TCGA-CV-7177-01 17 73498721 73498721 C T CASKIN2 Missense_Mutation p.E812K 0.79 deleterious(0.01) benign(0.017) TCGA-CV-7177-01 17 7578478 7578478 G T TP53 Missense_Mutation p.P151H 0.60 deleterious(0) possibly_damaging(0.773) TCGA-CV-7177-01 17 76134756 76134756 G C TMC8 Missense_Mutation p.R589P 0.10 tolerated(0.07) benign(0.008) TCGA-CV-7177-01 17 77753183 77753183 G T CBX2 Nonsense_Mutation p.E47* 0.59 TCGA-CV-7177-01 17 78348328 78348328 G A RNF213 Missense_Mutation p.R4338H 0.60 probably_damaging(0.999) TCGA-CV-7177-01 18 28968849 28968849 G A DSG4 Missense_Mutation p.A129T 0.31 deleterious(0) probably_damaging(0.999) TCGA-CV-7177-01 19 20807482 20807482 C A ZNF626 Nonsense_Mutation p.E401* 0.23 TCGA-CV-7177-01 19 22154781 22154781 G T ZNF208 Missense_Mutation p.H1019N 0.23 deleterious(0.01) probably_damaging(0.967) TCGA-CV-7177-01 19 40030624 40030624 C T EID2 Silent p.R32R 0.38 TCGA-CV-7177-01 19 42584413 42584413 G A ZNF574 Missense_Mutation p.R552Q 0.37 tolerated(0.34) possibly_damaging(0.666) TCGA-CV-7177-01 19 42819348 42819348 G A TMEM145 Missense_Mutation p.E172K 0.29 tolerated(0.08) possibly_damaging(0.505) TCGA-CV-7177-01 19 53855637 53855637 A G ZNF845 Missense_Mutation p.Q570R 0.09 tolerated(0.14) benign(0.373) TCGA-CV-7177-01 19 54678113 54678113 G A MBOAT7 Silent p.T348T 0.30 TCGA-CV-7177-01 19 54746647 54746647 C G LILRA6 5'Flank 0.08 TCGA-CV-7177-01 19 8436124 8436124 G A ANGPTL4 Splice_Site p.X253_splice 0.30 TCGA-CV-7177-01 1 111730992 111730992 G C DENND2D Missense_Mutation p.T367S 0.31 tolerated(0.68) benign(0.023) TCGA-CV-7177-01 1 12726525 12726525 C G AADACL4 Missense_Mutation p.Q335E 0.08 deleterious(0.01) probably_damaging(0.947) TCGA-CV-7177-01 1 12837210 12837210 C G PRAMEF12 Missense_Mutation p.S307W 0.25 deleterious(0) possibly_damaging(0.769) TCGA-CV-7177-01 1 151774300 151774300 C T LINGO4 Missense_Mutation p.R294Q 0.27 tolerated(0.16) benign(0.229) TCGA-CV-7177-01 1 156532415 156532415 G C IQGAP3 Missense_Mutation p.Q281E 0.26 deleterious(0) possibly_damaging(0.867) TCGA-CV-7177-01 1 158548862 158548862 C - OR10X1 Frame_Shift_Del p.K277Sfs*11 0.08 TCGA-CV-7177-01 1 173579235 173579235 T A ANKRD45 3'UTR 0.07 TCGA-CV-7177-01 1 182555965 182555969 ACTTT - RNASEL 5'UTR 0.42 TCGA-CV-7177-01 1 196874379 196874379 C A CFHR4 Missense_Mutation p.T132K 0.05 tolerated(0.11) probably_damaging(0.933) TCGA-CV-7177-01 1 203678644 203678644 G C ATP2B4 Missense_Mutation p.K591N 0.09 deleterious(0) probably_damaging(0.967) TCGA-CV-7177-01 1 248201955 248201955 T C OR2L2 Missense_Mutation p.L129P 0.03 deleterious(0) probably_damaging(0.992) TCGA-CV-7177-01 1 25687306 25687306 G C TMEM50A 3'UTR 0.40 TCGA-CV-7177-01 1 32098207 32098207 C T PEF1 Missense_Mutation p.D172N 0.29 tolerated(0.17) possibly_damaging(0.718) TCGA-CV-7177-01 1 85666170 85666170 G A SYDE2 Silent p.G170G 0.38 TCGA-CV-7177-01 20 31023531 31023531 G T ASXL1 Nonsense_Mutation p.E1006* 0.38 TCGA-CV-7177-01 20 33589835 33589835 G A MYH7B Missense_Mutation p.E1963K 0.18 probably_damaging(0.997) TCGA-CV-7177-01 20 3575209 3575209 G A ATRN Missense_Mutation p.E1136K 0.18 tolerated(0.21) benign(0.009) TCGA-CV-7177-01 20 3605205 3605205 C T ATRN Silent p.F1283F 0.14 TCGA-CV-7177-01 20 37202933 37202933 G A RALGAPB Missense_Mutation p.R1428Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-CV-7177-01 20 60835171 60835171 C G OSBPL2 Missense_Mutation p.Q58E 0.23 tolerated(0.22) benign(0.002) TCGA-CV-7177-01 20 61594660 61594660 C T SLC17A9 Missense_Mutation p.R222W 0.30 tolerated(0.11) possibly_damaging(0.67) TCGA-CV-7177-01 21 44299570 44299570 C G WDR4 Missense_Mutation p.Q12H 0.39 tolerated(0.11) benign(0.006) TCGA-CV-7177-01 22 19118994 19118994 T C TSSK2 Missense_Mutation p.S28P 0.27 deleterious(0.04) probably_damaging(0.942) TCGA-CV-7177-01 22 50671941 50671941 C T TUBGCP6 Missense_Mutation p.R307K 0.20 tolerated(0.52) benign(0.006) TCGA-CV-7177-01 22 50897810 50897810 C A SBF1 Missense_Mutation p.A1234S 0.45 tolerated(0.61) benign(0.068) TCGA-CV-7177-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.32 deleterious(0) probably_damaging(1) TCGA-CV-7177-01 2 46605175 46605175 C T EPAS1 Silent p.A464A 0.20 TCGA-CV-7177-01 2 55528370 55528370 A T CCDC88A Missense_Mutation p.D1571E 0.21 tolerated(0.87) benign(0.03) TCGA-CV-7177-01 2 99156130 99156130 T A INPP4A Missense_Mutation p.D270E 0.06 tolerated(0.07) probably_damaging(0.999) TCGA-CV-7177-01 3 107497345 107497345 G T BBX Nonsense_Mutation p.E728* 0.06 TCGA-CV-7177-01 3 129281955 129281955 G T PLXND1 Missense_Mutation p.N1550K 0.38 deleterious(0) probably_damaging(0.997) TCGA-CV-7177-01 3 151545495 151545495 C G AADAC Silent p.L245L 0.24 TCGA-CV-7177-01 3 155200527 155200527 A G PLCH1 Silent p.G1104G 0.22 TCGA-CV-7177-01 3 173997073 173997073 G C NLGN1 Missense_Mutation p.G428R 0.06 tolerated(0.06) probably_damaging(0.998) TCGA-CV-7177-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-CV-7177-01 3 49148936 49148936 C T USP19 Missense_Mutation p.E1070K 0.47 deleterious(0.02) possibly_damaging(0.635) TCGA-CV-7177-01 3 6903352 6903352 C T GRM7 Missense_Mutation p.P93S 0.61 tolerated(0.21) benign(0.138) TCGA-CV-7177-01 4 103226195 103226195 A T SLC39A8 Missense_Mutation p.L209H 0.16 deleterious(0.02) benign(0.333) TCGA-CV-7177-01 4 114823767 114823767 G C ARSJ Nonsense_Mutation p.S488* 0.35 TCGA-CV-7177-01 4 175897109 175897109 T A ADAM29 Missense_Mutation p.F145I 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-CV-7177-01 4 69513062 69513062 A G UGT2B15 Silent p.H451H 0.16 TCGA-CV-7177-01 4 85752750 85752750 C T WDFY3 Silent p.V195V 0.28 TCGA-CV-7177-01 5 159520157 159520157 G C PWWP2A Silent p.G500G 0.19 TCGA-CV-7177-01 5 34845770 34845770 G A TTC23L Missense_Mutation p.E83K 0.10 tolerated(0.31) benign(0.023) TCGA-CV-7177-01 6 119341142 119341142 C T FAM184A Splice_Site p.X444_splice 0.10 TCGA-CV-7177-01 6 125541335 125541345 TTCAGGTATGT - TPD52L1 Splice_Site p.X45_splice 0.13 TCGA-CV-7177-01 6 129724979 129724979 G T LAMA2 Missense_Mutation p.A1914S 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-CV-7177-01 6 15501599 15501599 G A JARID2 Missense_Mutation p.D803N 0.15 tolerated(0.05) benign(0.007) TCGA-CV-7177-01 6 161470492 161470492 G C MAP3K4 Missense_Mutation p.W396C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7177-01 6 26032187 26032187 G T HIST1H3B Silent p.G34G 0.10 TCGA-CV-7177-01 6 28554410 28554410 C T SCAND3 Missense_Mutation p.E29K 0.27 deleterious_low_confidence(0) benign(0.339) TCGA-CV-7177-01 6 52268776 52268776 C T PAQR8 Silent p.F255F 0.31 TCGA-CV-7177-01 7 143806750 143806750 C G OR2A2 Silent p.L25L 0.04 TCGA-CV-7177-01 7 45725669 45725669 C T ADCY1 Missense_Mutation p.H728Y 0.20 deleterious(0.02) benign(0.105) TCGA-CV-7177-01 7 50611693 50611693 G T DDC Missense_Mutation p.P31T 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7177-01 7 7613368 7613368 C T MIOS Missense_Mutation p.P421L 0.19 tolerated(0.05) benign(0.004) TCGA-CV-7177-01 7 99002548 99002548 C A PDAP1 Silent p.A14A 0.21 TCGA-CV-7177-01 8 120977486 120977486 A - DEPTOR Frame_Shift_Del p.N148Tfs*72 0.10 TCGA-CV-7177-01 8 136554958 136554958 A T KHDRBS3 Missense_Mutation p.E90V 0.08 deleterious(0) possibly_damaging(0.719) TCGA-CV-7177-01 8 37702008 37702008 T C BRF2 Nonstop_Mutation p.*420Wext*20 0.21 TCGA-CV-7177-01 9 117808854 117808854 T G TNC Missense_Mutation p.I1654L 0.23 tolerated(0.07) benign(0.34) TCGA-CV-7177-01 9 123632758 123632758 C T PHF19 Silent p.P109P 0.11 TCGA-CV-7177-01 9 138415134 138415134 G A LCN1 Missense_Mutation p.G93E 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-CV-7177-01 9 72082878 72082878 C T APBA1 Missense_Mutation p.G448E 0.29 deleterious(0.02) benign(0.263) TCGA-CV-7177-01 9 99003167 99003167 G A HSD17B3 Missense_Mutation p.S232L 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7177-01 X 101572273 101572273 G A NXF2 Intron 0.24 TCGA-CV-7177-01 X 101971267 101971267 C T GPRASP2 Silent p.T490T 0.20 TCGA-CV-7177-01 X 106888430 106888430 T C PRPS1 Missense_Mutation p.L185P 0.03 deleterious(0) probably_damaging(1) TCGA-CV-7177-01 X 107978579 107978579 A G IRS4 Silent p.C332C 0.33 TCGA-CV-7177-01 X 110644290 110644290 G C DCX Silent p.L292L 0.37 TCGA-CV-7177-01 X 110979971 110979971 T C ALG13 Silent p.A853A 0.11 TCGA-CV-7177-01 X 119054501 119054501 G T AKAP14 Missense_Mutation p.W175C 0.32 deleterious(0) probably_damaging(0.989) TCGA-CV-7177-01 X 119666336 119666336 C G CUL4B Missense_Mutation p.D812H 0.25 tolerated(0.06) benign(0.018) TCGA-CV-7177-01 X 122459926 122459926 G T GRIA3 Missense_Mutation p.W186C 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7177-01 X 153698126 153698126 C T PLXNA3 Silent p.Y1598Y 0.25 TCGA-CV-7177-01 X 44949094 44949094 T A KDM6A Missense_Mutation p.W1219R 0.16 deleterious(0) probably_damaging(0.955) TCGA-CV-7177-01 X 49854987 49854987 G A CLCN5 Missense_Mutation p.M653I 0.06 tolerated(0.19) benign(0.029) TCGA-CV-7177-01 X 86888820 86888820 G A KLHL4 Missense_Mutation p.E541K 0.06 deleterious(0) probably_damaging(0.979) TCGA-CV-7178-01 10 102048805 102048805 T A PKD2L1 Missense_Mutation p.Q753H 0.48 deleterious_low_confidence(0.03) benign(0.004) TCGA-CV-7178-01 10 115985910 115985910 G A TDRD1 Missense_Mutation p.R1037K 0.22 tolerated(0.31) possibly_damaging(0.87) TCGA-CV-7178-01 10 25887168 25887168 G T GPR158 Missense_Mutation p.E871D 0.26 tolerated(0.57) benign(0.037) TCGA-CV-7178-01 10 43650877 43650877 C T CSGALNACT2 Missense_Mutation p.R94W 0.17 deleterious(0.01) possibly_damaging(0.66) TCGA-CV-7178-01 10 70225525 70225525 G A DNA2 Silent p.L248L 0.19 TCGA-CV-7178-01 11 110035195 110035195 G A ZC3H12C Missense_Mutation p.G462E 0.44 deleterious(0.04) possibly_damaging(0.827) TCGA-CV-7178-01 11 128781799 128781799 C T KCNJ5 Missense_Mutation p.R211W 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7178-01 11 129979472 129979472 A T APLP2 Missense_Mutation p.E85V 0.39 deleterious(0) probably_damaging(0.999) TCGA-CV-7178-01 11 4967807 4967807 T C OR51A4 Missense_Mutation p.Q175R 0.38 deleterious(0.03) benign(0.012) TCGA-CV-7178-01 11 64084793 64084793 G A TRMT112 Silent p.F41F 0.43 TCGA-CV-7178-01 11 72946234 72946234 A G P2RY2 Missense_Mutation p.T344A 0.10 tolerated(0.42) benign(0.012) TCGA-CV-7178-01 11 76928297 76928297 C T GDPD4 3'UTR 0.19 TCGA-CV-7178-01 11 9009124 9009124 G A NRIP3 Silent p.L131L 0.18 TCGA-CV-7178-01 12 2027520 2027520 C A CACNA2D4 Missense_Mutation p.M40I 0.36 tolerated_low_confidence(0.48) benign(0) TCGA-CV-7178-01 12 40646775 40646775 C T LRRK2 Silent p.F415F 0.29 TCGA-CV-7178-01 12 57114446 57114446 G C NACA Missense_Mutation p.Q290E 0.15 deleterious_low_confidence(0) benign(0) TCGA-CV-7178-01 12 66531936 66531937 - A TMBIM4 Frame_Shift_Ins p.Y174Lfs*2 0.42 TCGA-CV-7178-01 12 99060002 99060002 A T APAF1 Missense_Mutation p.E410V 0.21 deleterious(0.03) benign(0.275) TCGA-CV-7178-01 13 28959102 28959102 G T FLT1 Missense_Mutation p.T679N 0.21 tolerated(0.17) possibly_damaging(0.719) TCGA-CV-7178-01 13 88327768 88327768 A T SLITRK5 Missense_Mutation p.D42V 0.15 deleterious(0) benign(0.322) TCGA-CV-7178-01 14 105213359 105213359 C G ADSSL1 3'UTR 0.34 TCGA-CV-7178-01 14 20248700 20248700 C G OR4M1 Nonsense_Mutation p.Y73* 0.23 TCGA-CV-7178-01 14 23016536 23016536 C T TRAC Nonsense_Mutation p.Q31* 0.14 TCGA-CV-7178-01 14 24438079 24438079 G C DHRS4 Nonstop_Mutation p.*279Sext*13 0.26 TCGA-CV-7178-01 14 45679706 45679706 T A MIS18BP1 Missense_Mutation p.D1010V 0.32 deleterious(0) possibly_damaging(0.601) TCGA-CV-7178-01 14 67799757 67799757 G A MPP5 3'UTR 0.36 TCGA-CV-7178-01 14 72191487 72191487 G A SIPA1L1 Missense_Mutation p.E1538K 0.18 tolerated(0.23) benign(0.171) TCGA-CV-7178-01 14 76948418 76948418 G A ESRRB Missense_Mutation p.E192K 0.07 tolerated(0.13) possibly_damaging(0.597) TCGA-CV-7178-01 15 100340095 100340095 C A DNM1P46 RNA 0.26 TCGA-CV-7178-01 15 40268785 40268785 G A EIF2AK4 Silent p.A663A 0.23 TCGA-CV-7178-01 15 40581116 40581116 G A PLCB2 Nonsense_Mutation p.Q1120* 0.08 TCGA-CV-7178-01 15 48500135 48500135 C A SLC12A1 Missense_Mutation p.F73L 0.19 tolerated(0.67) benign(0.175) TCGA-CV-7178-01 15 55931883 55931883 G T PRTG Missense_Mutation p.P761T 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7178-01 15 59185178 59185178 G A SLTM Missense_Mutation p.P606S 0.22 tolerated(0.38) unknown(0) TCGA-CV-7178-01 15 71124564 71124564 T A LARP6 Missense_Mutation p.R435W 0.34 deleterious(0) probably_damaging(1) TCGA-CV-7178-01 15 74467616 74467616 C T ISLR Silent p.R139R 0.21 TCGA-CV-7178-01 15 97327425 97327425 C T SPATA8 Silent p.C44C 0.14 TCGA-CV-7178-01 16 1033825 1033825 C T SOX8 Missense_Mutation p.R174W 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-7178-01 16 11643462 11643462 G A LITAF 3'UTR 0.25 TCGA-CV-7178-01 16 23706682 23706682 C T ERN2 Missense_Mutation p.V595I 0.21 deleterious(0) probably_damaging(0.995) TCGA-CV-7178-01 16 52473856 52473856 G C TOX3 Missense_Mutation p.Q338E 0.18 tolerated(0.13) possibly_damaging(0.759) TCGA-CV-7178-01 16 52473857 52473857 G T TOX3 Silent p.A337A 0.18 TCGA-CV-7178-01 16 77229484 77229484 G T MON1B Missense_Mutation p.D450Y 0.16 deleterious(0.02) possibly_damaging(0.797) TCGA-CV-7178-01 16 78198111 78198111 T G WWOX Missense_Mutation p.H147Q 0.32 deleterious(0.01) benign(0.178) TCGA-CV-7178-01 16 89986186 89986186 G A MC1R Missense_Mutation p.V174I 0.16 tolerated(1) benign(0.005) TCGA-CV-7178-01 17 18781170 18781170 G C PRPSAP2 Missense_Mutation p.M133I 0.25 deleterious(0) possibly_damaging(0.85) TCGA-CV-7178-01 17 36734745 36734745 G C SRCIN1 Missense_Mutation p.Q108E 0.21 deleterious(0.01) possibly_damaging(0.669) TCGA-CV-7178-01 17 37213363 37213363 C G CTD-2206N4.4 RNA 0.45 TCGA-CV-7178-01 17 3819545 3819545 G A P2RX1 5'UTR 0.21 TCGA-CV-7178-01 17 4053285 4053285 C T CYB5D2 Silent p.H117H 0.46 TCGA-CV-7178-01 17 7318427 7318427 C G NLGN2 Missense_Mutation p.P333A 0.42 tolerated(0.3) benign(0.048) TCGA-CV-7178-01 17 7577120 7577137 CGCACCTCAAAGCTGTTC - TP53 In_Frame_Del p.N268_R273del 0.35 TCGA-CV-7178-01 19 16319879 16319879 C T AP1M1 Missense_Mutation p.A146V 0.35 tolerated(0.2) benign(0.005) TCGA-CV-7178-01 19 19330033 19330033 G A NCAN Missense_Mutation p.G128E 0.45 deleterious(0) probably_damaging(1) TCGA-CV-7178-01 19 21910770 21910770 T A ZNF100 Missense_Mutation p.Q115L 0.17 deleterious(0) benign(0.367) TCGA-CV-7178-01 19 55495011 55495011 A G NLRP2 Missense_Mutation p.N649D 0.16 tolerated(0.34) benign(0.051) TCGA-CV-7178-01 19 56104200 56104200 C T FIZ1 Silent p.A369A 0.31 TCGA-CV-7178-01 19 57868268 57868268 A G ZNF304 Missense_Mutation p.Y344C 0.31 deleterious(0) possibly_damaging(0.907) TCGA-CV-7178-01 19 6532808 6532808 G A TNFSF9 Silent p.A93A 0.43 TCGA-CV-7178-01 1 110294748 110294748 G A EPS8L3 Nonsense_Mutation p.Q436* 0.22 TCGA-CV-7178-01 1 120539638 120539638 C A NOTCH2 Nonsense_Mutation p.E245* 0.17 TCGA-CV-7178-01 1 147131783 147131783 T C ACP6 Silent p.Q109Q 0.12 TCGA-CV-7178-01 1 150199019 150199019 T C ANP32E Missense_Mutation p.D201G 0.32 tolerated(0.41) unknown(0) TCGA-CV-7178-01 1 150316904 150316904 C T PRPF3 Intron 0.09 TCGA-CV-7178-01 1 159410091 159410091 T C OR10J1 Silent p.A181A 0.28 TCGA-CV-7178-01 1 161047483 161047483 C A PVRL4 Missense_Mutation p.G164C 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7178-01 1 161069390 161069390 G A KLHDC9 Silent p.E230E 0.54 TCGA-CV-7178-01 1 197070918 197070918 T G ASPM Missense_Mutation p.Q2488P 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-7178-01 1 200944027 200944027 C T KIF21B Silent p.A1543A 0.11 TCGA-CV-7178-01 1 205034931 205034931 G A CNTN2 Silent p.G570G 0.11 TCGA-CV-7178-01 1 205130494 205130494 G A DSTYK Missense_Mutation p.R614W 0.26 deleterious(0) probably_damaging(0.998) TCGA-CV-7178-01 1 223177961 223177961 C T DISP1 Silent p.F1074F 0.23 TCGA-CV-7178-01 1 228210572 228210572 C T WNT3A Silent p.H92H 0.14 TCGA-CV-7178-01 1 240555811 240555811 C A FMN2 Missense_Mutation p.A1620D 0.22 probably_damaging(0.997) TCGA-CV-7178-01 1 26752814 26752814 G C LIN28A Missense_Mutation p.Q165H 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-CV-7178-01 1 40771397 40771397 G A COL9A2 Missense_Mutation p.P366L 0.20 deleterious(0) possibly_damaging(0.908) TCGA-CV-7178-01 1 67861599 67861599 G A IL12RB2 Missense_Mutation p.D806N 0.25 deleterious(0.03) benign(0.048) TCGA-CV-7178-01 1 91403926 91403926 G A ZNF644 Silent p.A995A 0.23 TCGA-CV-7178-01 1 91405606 91405606 C T ZNF644 Silent p.G435G 0.25 TCGA-CV-7178-01 1 97770874 97770874 T A DPYD Missense_Mutation p.D747V 0.25 deleterious(0) benign(0.142) TCGA-CV-7178-01 20 1285638 1285638 T A SNPH Missense_Mutation p.I142N 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7178-01 20 14307545 14307545 C T FLRT3 Missense_Mutation p.R203H 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7178-01 20 34797434 34797434 G A EPB41L1 Missense_Mutation p.E565K 0.17 tolerated(0.13) benign(0.003) TCGA-CV-7178-01 20 368670 368670 C T TRIB3 Silent p.L6L 0.18 TCGA-CV-7178-01 20 44037000 44037000 C G DBNDD2 Missense_Mutation p.L67V 0.29 tolerated_low_confidence(0.09) benign(0.002) TCGA-CV-7178-01 20 5169722 5169722 C T CDS2 Missense_Mutation p.R331W 0.20 tolerated(0.22) benign(0) TCGA-CV-7178-01 20 8608996 8608996 G A PLCB1 Missense_Mutation p.R101H 0.29 deleterious(0) probably_damaging(0.917) TCGA-CV-7178-01 21 38639701 38639701 G C DSCR3 5'UTR 0.53 TCGA-CV-7178-01 22 41489079 41489079 C A EP300 Nonsense_Mutation p.S24* 0.15 TCGA-CV-7178-01 22 44645529 44645529 T C KIAA1644 3'UTR 0.22 TCGA-CV-7178-01 22 51143288 51143288 G A SHANK3 Missense_Mutation p.E648K 0.16 probably_damaging(0.998) TCGA-CV-7178-01 2 114257536 114257536 C G FOXD4L1 Missense_Mutation p.L235V 0.19 tolerated(0.05) benign(0.018) TCGA-CV-7178-01 2 179427268 179427268 G T TTN Missense_Mutation p.P27864H 0.16 TCGA-CV-7178-01 2 179638736 179638736 C T TTN Missense_Mutation p.V2387I 0.16 TCGA-CV-7178-01 2 198272767 198272767 T C SF3B1 Silent p.P398P 0.28 TCGA-CV-7178-01 2 220116737 220116737 C T TUBA4A Silent p.T73T 0.24 TCGA-CV-7178-01 2 220439871 220439871 T A INHA Missense_Mutation p.S242T 0.19 deleterious(0.04) benign(0.275) TCGA-CV-7178-01 2 233406237 233406237 C A CHRNG Missense_Mutation p.F168L 0.25 deleterious(0.03) possibly_damaging(0.908) TCGA-CV-7178-01 2 27457394 27457394 G A CAD Silent p.Q1209Q 0.18 TCGA-CV-7178-01 2 65541019 65541019 C T SPRED2 Silent p.Q291Q 0.17 TCGA-CV-7178-01 2 70520794 70520794 G A SNRPG 5'UTR 0.40 TCGA-CV-7178-01 2 74755571 74755571 C A AUP1 Silent p.L190L 0.28 TCGA-CV-7178-01 2 96780623 96780623 G C ADRA2B Missense_Mutation p.I422M 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-7178-01 3 10417306 10417306 C T ATP2B2 Silent p.T408T 0.58 TCGA-CV-7178-01 3 183681281 183681281 G A ABCC5 Silent p.D709D 0.15 TCGA-CV-7178-01 3 40573572 40573572 C G ZNF621 Missense_Mutation p.S104C 0.32 tolerated(0.08) benign(0.319) TCGA-CV-7178-01 4 118005444 118005444 G A TRAM1L1 Missense_Mutation p.S369L 0.43 deleterious(0) possibly_damaging(0.839) TCGA-CV-7178-01 4 1379683 1379683 C T UVSSA Silent p.A688A 0.51 TCGA-CV-7178-01 4 187175918 187175918 G A KLKB1 Splice_Site p.X497_splice 0.36 TCGA-CV-7178-01 4 187201215 187201215 A T F11 Missense_Mutation p.I269F 0.25 tolerated(0.2) benign(0.003) TCGA-CV-7178-01 4 2932838 2932838 C T MFSD10 Missense_Mutation p.R401H 0.50 deleterious(0) probably_damaging(0.963) TCGA-CV-7178-01 5 16682098 16682098 C T MYO10 Silent p.T1357T 0.12 TCGA-CV-7178-01 5 178140587 178140587 G C ZNF354A Missense_Mutation p.Q98E 0.44 tolerated(1) benign(0.071) TCGA-CV-7178-01 5 31305351 31305351 G T CDH6 Missense_Mutation p.R357L 0.41 deleterious(0.01) benign(0.429) TCGA-CV-7178-01 6 149893688 149893688 G C GINM1 Missense_Mutation p.D76H 0.26 deleterious(0) probably_damaging(0.988) TCGA-CV-7178-01 6 159401883 159401883 C T RSPH3 Missense_Mutation p.R403H 0.22 tolerated(0.14) benign(0.288) TCGA-CV-7178-01 6 27420986 27420986 C T ZNF184 Missense_Mutation p.E118K 0.51 tolerated(0.29) benign(0.033) TCGA-CV-7178-01 6 29633938 29633938 A G MOG Missense_Mutation p.Y149C 0.46 deleterious(0.01) probably_damaging(0.981) TCGA-CV-7178-01 6 32410230 32410230 C T HLA-DRA Missense_Mutation p.H30Y 0.23 tolerated(0.06) probably_damaging(0.996) TCGA-CV-7178-01 6 32816769 32816769 C T TAP1 Missense_Mutation p.E519K 0.25 tolerated(0.08) benign(0.071) TCGA-CV-7178-01 7 100677537 100677537 C G MUC17 Missense_Mutation p.T947S 0.30 benign(0.28) TCGA-CV-7178-01 7 117501264 117501264 C T CTTNBP2 Missense_Mutation p.R63Q 0.24 tolerated(0.13) benign(0.093) TCGA-CV-7178-01 7 120386013 120386013 T C KCND2 Silent p.H549H 0.12 TCGA-CV-7178-01 7 121944307 121944307 T C FEZF1 Missense_Mutation p.K62R 0.17 tolerated(0.07) probably_damaging(0.986) TCGA-CV-7178-01 7 142459768 142459768 C G PRSS1 Nonsense_Mutation p.S115* 0.14 TCGA-CV-7178-01 7 36459871 36459871 C T ANLN Nonsense_Mutation p.R655* 0.11 TCGA-CV-7178-01 7 44153489 44153489 C T AEBP1 Missense_Mutation p.R1036W 0.24 deleterious_low_confidence(0) benign(0.378) TCGA-CV-7178-01 7 44797689 44797689 C G ZMIZ2 Silent p.V265V 0.15 TCGA-CV-7178-01 7 70255917 70255917 C G AUTS2 Missense_Mutation p.P1239A 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-7178-01 8 119936942 119936942 C T TNFRSF11B Missense_Mutation p.E293K 0.13 tolerated(0.11) possibly_damaging(0.474) TCGA-CV-7178-01 8 122626402 122626402 T C HAS2 Missense_Mutation p.K536E 0.38 deleterious(0.02) benign(0.146) TCGA-CV-7178-01 8 124250097 124250097 C T C8orf76 Missense_Mutation p.A100T 0.54 deleterious(0) possibly_damaging(0.865) TCGA-CV-7178-01 8 124348766 124348766 C G ATAD2 Missense_Mutation p.D1020H 0.09 deleterious(0) probably_damaging(0.992) TCGA-CV-7178-01 8 145770919 145770919 C T ARHGAP39 Silent p.E745E 0.38 TCGA-CV-7178-01 8 56912010 56912010 A G LYN Missense_Mutation p.E413G 0.11 deleterious(0) probably_damaging(0.983) TCGA-CV-7178-01 8 95182707 95182707 T C CDH17 Silent p.V328V 0.18 TCGA-CV-7178-01 9 120176823 120176823 C T ASTN2 Missense_Mutation p.A132T 0.28 tolerated_low_confidence(0.1) unknown(0) TCGA-CV-7178-01 9 129595076 129595076 C T ZBTB43 Silent p.P96P 0.28 TCGA-CV-7178-01 9 135221775 135221775 T A SETX Missense_Mutation p.L87F 0.23 deleterious(0) probably_damaging(0.917) TCGA-CV-7178-01 9 21971132 21971133 - G CDKN2A Frame_Shift_Ins p.A76Rfs*44 0.38 TCGA-CV-7178-01 9 35618304 35618304 C T CD72 5'UTR 0.33 TCGA-CV-7178-01 9 37521758 37521758 G A FBXO10 Silent p.L670L 0.42 TCGA-CV-7178-01 X 131212552 131212553 - A FRMD7 Frame_Shift_Ins p.Y498Lfs*15 0.19 TCGA-CV-7178-01 X 142795518 142795518 C A SPANXN2 Missense_Mutation p.V54L 0.37 deleterious(0.05) possibly_damaging(0.622) TCGA-CV-7178-01 X 65486617 65486617 G C HEPH 3'UTR 0.36 TCGA-CV-7178-01 X 77912862 77912862 C G ZCCHC5 Missense_Mutation p.W352C 0.31 deleterious(0.03) benign(0.019) TCGA-CV-7178-01 X 99901312 99901312 T C SRPX2 5'UTR 0.21 TCGA-CV-7180-01 10 129839235 129839235 C T PTPRE Silent p.N30N 0.17 TCGA-CV-7180-01 10 45498926 45498926 T C ZNF22 Missense_Mutation p.I37T 0.20 tolerated(0.16) benign(0.01) TCGA-CV-7180-01 10 82126492 82126492 G A DYDC2 Missense_Mutation p.E121K 0.21 tolerated(0.09) benign(0.212) TCGA-CV-7180-01 10 96350210 96350210 G T HELLS Missense_Mutation p.R510L 0.18 deleterious(0) probably_damaging(0.992) TCGA-CV-7180-01 10 98917439 98917439 G A SLIT1 Intron 0.19 TCGA-CV-7180-01 11 126126642 126126642 A - FAM118B Frame_Shift_Del p.M293Cfs*25 0.15 TCGA-CV-7180-01 11 130275560 130275560 G A ADAMTS8 Nonsense_Mutation p.R855* 0.05 TCGA-CV-7180-01 11 27395209 27395209 T A LGR4 Missense_Mutation p.N423I 0.40 deleterious(0) probably_damaging(0.999) TCGA-CV-7180-01 11 59245249 59245249 C T OR4D10 Missense_Mutation p.S116L 0.26 tolerated(0.06) benign(0.009) TCGA-CV-7180-01 12 109696115 109696115 G T ACACB Silent p.R2102R 0.21 TCGA-CV-7180-01 12 116408480 116408480 T C MED13L Missense_Mutation p.I1996V 0.19 deleterious(0) probably_damaging(0.97) TCGA-CV-7180-01 12 64456755 64456755 C G SRGAP1 Missense_Mutation p.A287G 0.19 deleterious(0.01) probably_damaging(0.937) TCGA-CV-7180-01 13 24876816 24876816 G A SPATA13 Missense_Mutation p.V1247I 0.21 tolerated(0.79) benign(0.003) TCGA-CV-7180-01 13 99449739 99449739 T C DOCK9 Missense_Mutation p.N1988S 0.18 deleterious(0.01) possibly_damaging(0.579) TCGA-CV-7180-01 14 61201602 61201602 C T MNAT1 Missense_Mutation p.R8W 0.08 deleterious(0) probably_damaging(0.947) TCGA-CV-7180-01 14 75469994 75469994 G T EIF2B2 Silent p.L60L 0.26 TCGA-CV-7180-01 15 80181637 80181637 T C ST20-MTHFS Silent p.Q35Q 0.15 TCGA-CV-7180-01 15 90168446 90168446 C A TICRR Silent p.G1635G 0.12 TCGA-CV-7180-01 16 1537325 1537325 G C PTX4 Missense_Mutation p.P258R 0.16 deleterious(0.05) possibly_damaging(0.875) TCGA-CV-7180-01 17 72791738 72791738 C T TMEM104 Silent p.P201P 0.26 TCGA-CV-7180-01 17 73774633 73774633 T C H3F3B 3'UTR 0.20 TCGA-CV-7180-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7180-01 18 56171233 56171233 C T ALPK2 Silent p.Q2059Q 0.06 TCGA-CV-7180-01 19 3526259 3526259 G A FZR1 Missense_Mutation p.G88S 0.24 tolerated(0.33) benign(0.01) TCGA-CV-7180-01 19 58983227 58983227 G A ZNF324 Silent p.V456V 0.24 TCGA-CV-7180-01 1 12331121 12331121 G A VPS13D Silent p.K681K 0.07 TCGA-CV-7180-01 1 151149264 151149264 C T VPS72 Silent p.K328K 0.08 TCGA-CV-7180-01 1 151774040 151774040 A G LINGO4 Missense_Mutation p.S381P 0.15 tolerated(0.15) benign(0.021) TCGA-CV-7180-01 1 176661264 176661264 G A PAPPA2 Missense_Mutation p.D812N 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-7180-01 1 196918742 196918742 C T CFHR2 Silent p.C72C 0.29 TCGA-CV-7180-01 1 204978741 204978741 T G NFASC Missense_Mutation p.C1116G 0.12 deleterious(0) unknown(0) TCGA-CV-7180-01 1 213147325 213147325 C T VASH2 Missense_Mutation p.P259L 0.07 deleterious(0.03) benign(0.006) TCGA-CV-7180-01 1 228467143 228467143 C T OBSCN Missense_Mutation p.S2894L 0.10 possibly_damaging(0.841) TCGA-CV-7180-01 1 41228713 41228713 A T NFYC Missense_Mutation p.I239F 0.40 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-CV-7180-01 1 43912750 43912750 G A SZT2 Missense_Mutation p.R3009Q 0.08 tolerated(0.23) probably_damaging(0.964) TCGA-CV-7180-01 1 55058224 55058224 G T ACOT11 Missense_Mutation p.G106V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7180-01 1 93680428 93680428 T A CCDC18 Missense_Mutation p.L595M 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7180-01 20 6758934 6758934 G T BMP2 Missense_Mutation p.R130L 0.11 tolerated(0.69) benign(0.068) TCGA-CV-7180-01 21 42647622 42647622 G T BACE2 3'UTR 0.30 TCGA-CV-7180-01 2 101096979 101096979 G T NMS Missense_Mutation p.D120Y 0.19 deleterious(0) possibly_damaging(0.533) TCGA-CV-7180-01 2 152534283 152534283 G A NEB Silent p.N1190N 0.21 TCGA-CV-7180-01 2 160825846 160825846 T C PLA2R1 Missense_Mutation p.I895M 0.15 tolerated(0.22) possibly_damaging(0.866) TCGA-CV-7180-01 2 27480853 27480853 G T SLC30A3 Silent p.V166V 0.22 TCGA-CV-7180-01 2 32422829 32422829 C A SLC30A6 Missense_Mutation p.P240Q 0.22 deleterious(0) possibly_damaging(0.853) TCGA-CV-7180-01 2 60688312 60688312 C T BCL11A Missense_Mutation p.E579K 0.09 tolerated(0.32) benign(0.177) TCGA-CV-7180-01 2 96689170 96689170 C A GPAT2 Missense_Mutation p.A639S 0.09 tolerated(0.09) possibly_damaging(0.567) TCGA-CV-7180-01 3 49688471 49688471 G A BSN Missense_Mutation p.V649I 0.14 unknown(0) TCGA-CV-7180-01 4 101386581 101386581 C A EMCN Missense_Mutation p.K125N 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-CV-7180-01 4 107170083 107170083 T C TBCK Missense_Mutation p.I239V 0.23 tolerated(0.49) benign(0.001) TCGA-CV-7180-01 5 141334957 141334957 C T PCDH12 Silent p.P820P 0.24 TCGA-CV-7180-01 5 19721469 19721469 G A CDH18 Silent p.V210V 0.24 TCGA-CV-7180-01 5 58270507 58270507 C T PDE4D Missense_Mutation p.R805H 0.18 tolerated_low_confidence(0.23) benign(0) TCGA-CV-7180-01 5 71016344 71016344 G A CARTPT Missense_Mutation p.G85S 0.43 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7180-01 5 85578522 85578522 T C NBPF22P RNA 0.33 TCGA-CV-7180-01 6 121401926 121401926 C G TBC1D32 Missense_Mutation p.Q1255H 0.10 deleterious_low_confidence(0.03) benign(0.069) TCGA-CV-7180-01 6 155450592 155450592 G A TIAM2 Missense_Mutation p.G79S 0.20 tolerated_low_confidence(0.81) benign(0.006) TCGA-CV-7180-01 6 26156599 26156599 C G HIST1H1E 5'UTR 0.14 TCGA-CV-7180-01 6 41753268 41753268 C T PRICKLE4 Missense_Mutation p.A191V 0.12 deleterious(0) probably_damaging(0.99) TCGA-CV-7180-01 7 30485828 30485828 G A NOD1 Silent p.N794N 0.08 TCGA-CV-7180-01 7 92987685 92987685 C T CCDC132 Silent p.I944I 0.11 TCGA-CV-7180-01 8 144997709 144997709 G C PLEC Missense_Mutation p.Q2267E 0.10 unknown(0) TCGA-CV-7180-01 8 2796121 2796121 A G CSMD1 Missense_Mutation p.C3561R 0.21 probably_damaging(0.992) TCGA-CV-7180-01 8 53452412 53452412 T C FAM150A Missense_Mutation p.R102G 0.05 deleterious(0) probably_damaging(0.974) TCGA-CV-7180-01 8 8185602 8185602 G A SGK223 Missense_Mutation p.A897V 0.17 benign(0.002) TCGA-CV-7180-01 9 108097866 108097866 T C SLC44A1 Missense_Mutation p.C98R 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-7180-01 9 21974684 21974684 G A CDKN2A Missense_Mutation p.P48L 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7180-01 9 27949442 27949442 G T LINGO2 Missense_Mutation p.P410T 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-7180-01 9 96418259 96418259 C T PHF2 Silent p.F332F 0.14 TCGA-CV-7180-01 X 1428416 1428416 G A CSF2RA 3'UTR 0.07 TCGA-CV-7180-01 X 147084786 147084786 T A FMR1NB Missense_Mutation p.S115T 0.35 tolerated(0.14) benign(0.294) TCGA-CV-7180-01 X 77913257 77913257 C A ZCCHC5 Missense_Mutation p.A221S 0.16 deleterious(0.02) benign(0.056) TCGA-CV-7183-01 10 120353933 120353933 C A PRLHR Missense_Mutation p.R275L 0.22 deleterious(0) probably_damaging(0.98) TCGA-CV-7183-01 11 1651181 1651181 C A KRTAP5-5 Silent p.G37G 0.20 TCGA-CV-7183-01 11 34485744 34485744 C T CAT Missense_Mutation p.R430W 0.23 deleterious(0.02) benign(0.403) TCGA-CV-7183-01 11 534289 534289 C A HRAS Missense_Mutation p.G12C 0.13 deleterious(0.04) possibly_damaging(0.629) TCGA-CV-7183-01 11 55652898 55652898 C T TRIM51 Intron 0.24 TCGA-CV-7183-01 12 34179455 34179455 G C ALG10 Missense_Mutation p.A343P 0.19 deleterious(0.02) possibly_damaging(0.529) TCGA-CV-7183-01 12 49415846 49415846 G A KMT2D Nonsense_Mutation p.R5501* 0.26 TCGA-CV-7183-01 12 64062197 64062197 G T DPY19L2 5'UTR 0.25 TCGA-CV-7183-01 13 70549904 70549904 A C KLHL1 Silent p.P176P 0.27 TCGA-CV-7183-01 13 98828825 98828825 G A RNF113B Silent p.L222L 0.25 TCGA-CV-7183-01 14 21863099 21863099 C A CHD8 Nonsense_Mutation p.E1788* 0.28 TCGA-CV-7183-01 14 53175510 53175510 A T PSMC6 Missense_Mutation p.R92S 0.27 tolerated(0.05) possibly_damaging(0.73) TCGA-CV-7183-01 15 42109605 42109605 C T MAPKBP1 Silent p.R583R 0.25 TCGA-CV-7183-01 15 43771645 43771645 C T TP53BP1 Silent p.Q246Q 0.32 TCGA-CV-7183-01 16 27504019 27504019 C T GTF3C1 Silent p.S964S 0.30 TCGA-CV-7183-01 16 30749849 30749850 - A SRCAP Frame_Shift_Ins p.H2830Qfs*3 0.15 TCGA-CV-7183-01 16 67262976 67262976 G A TMEM208 Missense_Mutation p.R161Q 0.22 deleterious(0) unknown(0) TCGA-CV-7183-01 16 67264614 67264614 C T FHOD1 Silent p.L916L 0.21 TCGA-CV-7183-01 17 25936285 25936286 TA - KSR1 Frame_Shift_Del p.Y604* 0.23 TCGA-CV-7183-01 17 27613086 27613087 TC - NUFIP2 Frame_Shift_Del p.R642Ifs*9 0.15 TCGA-CV-7183-01 17 42855361 42855361 G A ADAM11 Nonsense_Mutation p.W704* 0.22 TCGA-CV-7183-01 17 58234830 58234830 G A CA4 Missense_Mutation p.G104E 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-7183-01 19 12958457 12958457 G C MAST1 Missense_Mutation p.E174Q 0.30 deleterious(0) possibly_damaging(0.663) TCGA-CV-7183-01 19 18899307 18899307 G A COMP Missense_Mutation p.A260V 0.10 deleterious(0) probably_damaging(0.994) TCGA-CV-7183-01 19 36360482 36360482 G A APLP1 Intron 0.29 TCGA-CV-7183-01 19 46318949 46318949 C T SYMPK Missense_Mutation p.A1232T 0.24 tolerated_low_confidence(0.1) benign(0.213) TCGA-CV-7183-01 19 46388435 46388436 TC - IRF2BP1 Frame_Shift_Del p.K200Afs*119 0.23 TCGA-CV-7183-01 19 55107315 55107315 C T LILRA1 Silent p.Y291Y 0.27 TCGA-CV-7183-01 19 8174522 8174522 G T FBN3 Silent p.G1483G 0.23 TCGA-CV-7183-01 1 149859054 149859055 TA - HIST2H2AB 3'UTR 0.08 TCGA-CV-7183-01 1 152383314 152383314 C A CRNN Missense_Mutation p.A82S 0.14 deleterious(0.01) benign(0.326) TCGA-CV-7183-01 1 159683270 159683270 C T CRP 3'UTR 0.19 TCGA-CV-7183-01 1 160650998 160650998 T C CD48 Missense_Mutation p.T216A 0.20 tolerated(0.22) benign(0.178) TCGA-CV-7183-01 1 176738863 176738863 G A PAPPA2 Missense_Mutation p.G1482R 0.09 deleterious(0) probably_damaging(1) TCGA-CV-7183-01 1 207109003 207109003 C T PIGR Silent p.E402E 0.17 TCGA-CV-7183-01 1 207222672 207222672 T C YOD1 Missense_Mutation p.D247G 0.27 deleterious(0.02) probably_damaging(1) TCGA-CV-7183-01 1 241680611 241680611 G C FH Missense_Mutation p.S46R 0.23 deleterious_low_confidence(0.03) benign(0.005) TCGA-CV-7183-01 1 248737781 248737781 C T OR2T34 Missense_Mutation p.G93E 0.21 deleterious(0.03) possibly_damaging(0.826) TCGA-CV-7183-01 1 26360245 26360245 C T EXTL1 Missense_Mutation p.T526M 0.28 tolerated(0.06) probably_damaging(0.99) TCGA-CV-7183-01 1 27614251 27614252 - AT WDTC1 Frame_Shift_Ins p.H128Sfs*11 0.28 TCGA-CV-7183-01 1 39908232 39908232 A T MACF1 Missense_Mutation p.K4307M 0.39 probably_damaging(1) TCGA-CV-7183-01 1 4829977 4829977 C T AJAP1 Silent p.I298I 0.21 TCGA-CV-7183-01 20 25460831 25460831 T - NINL Frame_Shift_Del p.H628Lfs*13 0.26 TCGA-CV-7183-01 20 58318189 58318189 G A PHACTR3 Missense_Mutation p.R49H 0.22 tolerated(0.17) probably_damaging(0.998) TCGA-CV-7183-01 21 33065610 33065610 T A SCAF4 Missense_Mutation p.S504C 0.25 probably_damaging(0.923) TCGA-CV-7183-01 2 197183966 197183966 C T HECW2 Missense_Mutation p.G550S 0.22 tolerated_low_confidence(0.53) benign(0) TCGA-CV-7183-01 2 223918016 223918016 C T KCNE4 Silent p.N156N 0.20 TCGA-CV-7183-01 3 126733334 126733334 C T PLXNA1 Missense_Mutation p.T873M 0.20 tolerated(0.15) possibly_damaging(0.891) TCGA-CV-7183-01 3 194080356 194080356 C A LRRC15 Missense_Mutation p.V479F 0.18 tolerated(0.55) benign(0.009) TCGA-CV-7183-01 3 32032156 32032156 C T ZNF860 Missense_Mutation p.H529Y 0.32 deleterious(0.01) benign(0.146) TCGA-CV-7183-01 4 113347690 113347690 G T ALPK1 Silent p.P230P 0.22 TCGA-CV-7183-01 4 126373729 126373729 G T FAT4 Missense_Mutation p.G3853V 0.20 probably_damaging(1) TCGA-CV-7183-01 4 134071537 134071537 G A PCDH10 Missense_Mutation p.R81H 0.23 deleterious(0) probably_damaging(0.998) TCGA-CV-7183-01 4 141300319 141300319 C A SCOC Missense_Mutation p.P76T 0.16 tolerated(0.07) possibly_damaging(0.796) TCGA-CV-7183-01 4 146770712 146770712 C T ZNF827 Silent p.A661A 0.19 TCGA-CV-7183-01 4 187629108 187629108 G T FAT1 Nonsense_Mutation p.S625* 0.31 TCGA-CV-7183-01 4 39978105 39978105 C T PDS5A Silent p.E31E 0.25 TCGA-CV-7183-01 4 74902951 74902951 C T CXCL3 3'UTR 0.18 TCGA-CV-7183-01 4 83280734 83280735 - C HNRNPD Frame_Shift_Ins p.F117Vfs*6 0.22 TCGA-CV-7183-01 5 140263259 140263259 C T PCDHA13 Missense_Mutation p.P469L 0.26 deleterious_low_confidence(0.02) benign(0.436) TCGA-CV-7183-01 5 167545383 167545383 G T TENM2 Missense_Mutation p.D634Y 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7183-01 5 174869350 174869350 G A DRD1 Silent p.V251V 0.25 TCGA-CV-7183-01 6 108508599 108508599 A - NR2E1 Frame_Shift_Del p.T366Pfs*46 0.22 TCGA-CV-7183-01 6 26271609 26271609 C A HIST1H3G Missense_Mutation p.A2S 0.19 deleterious_low_confidence(0) benign(0.063) TCGA-CV-7183-01 6 39159505 39159505 C A KCNK5 Missense_Mutation p.A221S 0.27 tolerated(0.52) benign(0.319) TCGA-CV-7183-01 6 42796801 42796801 C T GLTSCR1L Nonsense_Mutation p.Q244* 0.24 TCGA-CV-7183-01 6 56473921 56473921 G A DST Intron 0.26 TCGA-CV-7183-01 7 136699801 136699801 C T CHRM2 Silent p.F63F 0.26 TCGA-CV-7183-01 8 110503288 110503288 T A PKHD1L1 Missense_Mutation p.L3358M 0.29 deleterious(0) possibly_damaging(0.885) TCGA-CV-7183-01 8 139164609 139164609 C A FAM135B Missense_Mutation p.R703S 0.17 deleterious(0) possibly_damaging(0.642) TCGA-CV-7183-01 8 145771119 145771119 C T ARHGAP39 Missense_Mutation p.V679I 0.17 tolerated(0.3) benign(0.184) TCGA-CV-7183-01 8 27918050 27918050 G A NUGGC Silent p.H330H 0.17 TCGA-CV-7183-01 8 48883929 48883929 G T MCM4 Missense_Mutation p.R610L 0.20 deleterious(0) probably_damaging(0.99) TCGA-CV-7183-01 8 70570892 70570892 T A SULF1 3'UTR 0.28 TCGA-CV-7183-01 9 134136553 134136553 C T FAM78A Missense_Mutation p.V170M 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7183-01 9 135147149 135147149 C T SETX Missense_Mutation p.D2383N 0.03 deleterious(0.01) benign(0.314) TCGA-CV-7183-01 9 136253278 136253278 C A C9orf96 Missense_Mutation p.S114R 0.25 deleterious(0.01) possibly_damaging(0.653) TCGA-CV-7183-01 9 34241766 34241766 T C UBAP1 Missense_Mutation p.L312P 0.34 tolerated(0.16) benign(0.302) TCGA-CV-7235-01 10 103901393 103901393 C A PPRC1 Missense_Mutation p.P1043H 0.08 deleterious_low_confidence(0) benign(0.375) TCGA-CV-7235-01 10 124402660 124402660 G A DMBT1 Missense_Mutation p.G2330R 0.16 tolerated(0.59) benign(0.093) TCGA-CV-7235-01 10 27303483 27303483 T C ANKRD26 Missense_Mutation p.Y1555C 0.57 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7235-01 10 29776255 29776255 C G SVIL Intron 0.39 TCGA-CV-7235-01 10 74620189 74620189 C T MCU Missense_Mutation p.R134C 0.18 deleterious(0) probably_damaging(0.993) TCGA-CV-7235-01 10 75553701 75553701 A C ZSWIM8 Missense_Mutation p.T842P 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-CV-7235-01 10 84625186 84625186 A T NRG3 Missense_Mutation p.E349D 0.19 deleterious(0.03) possibly_damaging(0.869) TCGA-CV-7235-01 10 85972970 85972970 C T CDHR1 Missense_Mutation p.R636C 0.25 deleterious(0) possibly_damaging(0.86) TCGA-CV-7235-01 11 102666294 102666294 G C MMP1 Missense_Mutation p.L224V 0.07 deleterious(0) probably_damaging(0.998) TCGA-CV-7235-01 11 103780243 103780243 G C PDGFD 3'UTR 0.16 TCGA-CV-7235-01 11 118773004 118773004 G A BCL9L Missense_Mutation p.P483L 0.51 benign(0.06) TCGA-CV-7235-01 11 31616423 31616423 G A ELP4 Missense_Mutation p.R163H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7235-01 11 55653123 55653123 G A TRIM51 Missense_Mutation p.M73I 0.46 tolerated(0.07) benign(0.091) TCGA-CV-7235-01 11 55999656 55999656 C A OR5T2 Missense_Mutation p.V336L 0.26 deleterious(0) possibly_damaging(0.45) TCGA-CV-7235-01 11 62564806 62564806 G A NXF1 Missense_Mutation p.T369M 0.13 tolerated(0.16) benign(0.001) TCGA-CV-7235-01 11 64563761 64563761 G T MAP4K2 Missense_Mutation p.Q579K 0.28 deleterious(0.01) benign(0.102) TCGA-CV-7235-01 11 65960978 65960978 G C PACS1 Missense_Mutation p.K126N 0.19 tolerated(0.05) probably_damaging(0.984) TCGA-CV-7235-01 11 70333123 70333123 C T SHANK2 Missense_Mutation p.R1093Q 0.04 deleterious(0.02) benign(0.012) TCGA-CV-7235-01 11 869830 869830 C A CHID1 3'UTR 0.28 TCGA-CV-7235-01 12 102159938 102159938 C G GNPTAB Missense_Mutation p.A515P 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7235-01 12 104063402 104063402 A G STAB2 Silent p.G752G 0.16 TCGA-CV-7235-01 12 109328032 109328032 G C SVOP Missense_Mutation p.F264L 0.29 deleterious(0) probably_damaging(0.99) TCGA-CV-7235-01 12 111926424 111926424 G A ATXN2 Missense_Mutation p.P859L 0.29 benign(0.296) TCGA-CV-7235-01 12 112457557 112457557 C G ERP29 Intron 0.11 TCGA-CV-7235-01 12 11546897 11546897 C G PRB2 Missense_Mutation p.A39P 0.28 tolerated_low_confidence(0.33) unknown(0) TCGA-CV-7235-01 12 11546907 11546907 A C PRB2 Missense_Mutation p.N35K 0.33 tolerated_low_confidence(1) unknown(0) TCGA-CV-7235-01 12 123200718 123200718 G A HCAR3 Silent p.H189H 0.20 TCGA-CV-7235-01 12 12483163 12483163 C A MANSC1 Missense_Mutation p.G365V 0.27 deleterious(0) probably_damaging(0.968) TCGA-CV-7235-01 12 132425944 132425944 C G PUS1 Missense_Mutation p.Q218E 0.12 tolerated(0.37) benign(0.015) TCGA-CV-7235-01 12 13243618 13243618 G A GSG1 Silent p.P61P 0.26 TCGA-CV-7235-01 12 48526750 48526750 C A PFKM Missense_Mutation p.L184I 0.19 tolerated(0.05) probably_damaging(1) TCGA-CV-7235-01 12 57111028 57111028 G C NACA Intron 0.09 TCGA-CV-7235-01 12 57167654 57167654 G A HSD17B6 Silent p.A6A 0.18 TCGA-CV-7235-01 12 57560805 57560805 C G LRP1 Missense_Mutation p.R964G 0.18 benign(0.232) TCGA-CV-7235-01 12 65461539 65461539 G C WIF1 Silent p.G190G 0.24 TCGA-CV-7235-01 12 8693386 8693386 G T CLEC4E Nonsense_Mutation p.S3* 0.23 TCGA-CV-7235-01 13 108862659 108862659 T G LIG4 Missense_Mutation p.K320Q 0.53 tolerated(0.25) benign(0.009) TCGA-CV-7235-01 13 111953845 111953845 A G ARHGEF7 Missense_Mutation p.Y595C 0.52 deleterious(0) probably_damaging(0.98) TCGA-CV-7235-01 14 105415341 105415341 T A AHNAK2 Missense_Mutation p.K2149N 0.24 benign(0.188) TCGA-CV-7235-01 14 23346653 23346653 G C LRP10 Missense_Mutation p.D687H 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-7235-01 14 31346874 31346874 C G COCH Missense_Mutation p.S60C 0.19 tolerated(0.06) possibly_damaging(0.807) TCGA-CV-7235-01 14 44976338 44976338 G A FSCB 5'UTR 0.44 TCGA-CV-7235-01 14 67390956 67390956 G A GPHN Missense_Mutation p.E259K 0.18 tolerated_low_confidence(0.25) benign(0.002) TCGA-CV-7235-01 15 20169952 20169952 G T IGHV1OR15-9 Missense_Mutation p.S107Y 0.44 deleterious(0.03) benign(0.186) TCGA-CV-7235-01 15 23006379 23006379 G A NIPA2 Silent p.L309L 0.39 TCGA-CV-7235-01 15 48060874 48060874 C G SEMA6D Missense_Mutation p.S621C 0.38 tolerated(0.09) possibly_damaging(0.847) TCGA-CV-7235-01 15 58840724 58840724 A G LIPC Missense_Mutation p.K335R 0.31 tolerated(0.7) benign(0.019) TCGA-CV-7235-01 15 74284510 74284510 G A STOML1 Nonsense_Mutation p.Q19* 0.11 TCGA-CV-7235-01 16 19557137 19557137 A G CCP110 Splice_Site p.X902_splice 0.33 TCGA-CV-7235-01 16 4903155 4903155 G C UBN1 Missense_Mutation p.Q79H 0.22 tolerated(0.22) benign(0.001) TCGA-CV-7235-01 16 855768 855768 C T PRR25 Missense_Mutation p.T109I 0.23 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-CV-7235-01 17 10303758 10303758 C A MYH8 Missense_Mutation p.K1228N 0.17 deleterious(0) possibly_damaging(0.845) TCGA-CV-7235-01 17 43246702 43246702 A G HEXIM2 Silent p.E129E 0.12 TCGA-CV-7235-01 17 61958488 61958488 C T GH2 Silent p.K64K 0.58 TCGA-CV-7235-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.62 deleterious(0) probably_damaging(0.992) TCGA-CV-7235-01 17 80211118 80211118 G A CSNK1D Silent p.I113I 0.57 TCGA-CV-7235-01 18 28713884 28713884 C A DSC1 Missense_Mutation p.A696S 0.48 deleterious(0.05) benign(0.042) TCGA-CV-7235-01 18 46889584 46889584 A T DYM Silent p.L147L 0.17 TCGA-CV-7235-01 19 12912075 12912075 T A PRDX2 Translation_Start_Site p.M1? 0.45 tolerated_low_confidence(0.26) benign(0.049) TCGA-CV-7235-01 19 17088187 17088189 GAA - CPAMD8 In_Frame_Del p.F630del 0.19 TCGA-CV-7235-01 19 17122306 17122306 C T CPAMD8 Missense_Mutation p.V199I 0.23 tolerated(0.28) benign(0.078) TCGA-CV-7235-01 19 35232698 35232698 G T ZNF181 Missense_Mutation p.S471I 0.30 deleterious(0) possibly_damaging(0.646) TCGA-CV-7235-01 19 43259226 43259226 G C PSG8 Missense_Mutation p.T301R 0.51 deleterious(0) probably_damaging(0.958) TCGA-CV-7235-01 19 47111573 47111573 A G CALM3 Missense_Mutation p.M52V 0.58 deleterious_low_confidence(0.01) benign(0.329) TCGA-CV-7235-01 19 58806142 58806142 G T ZNF8 Missense_Mutation p.C323F 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7235-01 19 7619913 7619913 C T PNPLA6 Silent p.H933H 0.59 TCGA-CV-7235-01 1 13495995 13495995 C A PRAMEF16 Silent p.R106R 0.52 TCGA-CV-7235-01 1 149884914 149884914 C T SV2A Missense_Mutation p.G160D 0.48 deleterious(0) probably_damaging(0.998) TCGA-CV-7235-01 1 152085381 152085381 G A TCHH Silent p.D104D 0.57 TCGA-CV-7235-01 1 152671632 152671632 C T LCE2A Silent p.P85P 0.60 TCGA-CV-7235-01 1 155744943 155744943 G A GON4L Nonsense_Mutation p.Q734* 0.12 TCGA-CV-7235-01 1 161677051 161677051 C T FCRLA Silent p.V16V 0.12 TCGA-CV-7235-01 1 167088559 167088559 G A DUSP27 Missense_Mutation p.G171S 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-CV-7235-01 1 175097245 175097245 T G TNN Silent p.L1041L 0.11 TCGA-CV-7235-01 1 17552556 17552556 G C PADI1 Silent p.L185L 0.13 TCGA-CV-7235-01 1 192985497 192985497 G C UCHL5 Missense_Mutation p.A325G 0.10 tolerated(0.06) unknown(0) TCGA-CV-7235-01 1 196295872 196295872 G C KCNT2 Missense_Mutation p.P751A 0.07 deleterious(0) probably_damaging(0.997) TCGA-CV-7235-01 1 202733221 202733221 T C KDM5B Missense_Mutation p.N255S 0.21 tolerated(0.29) benign(0.115) TCGA-CV-7235-01 1 2327276 2327276 C T RER1 Missense_Mutation p.S16L 0.19 tolerated(0.2) probably_damaging(0.911) TCGA-CV-7235-01 1 237969513 237969513 T C RYR2 Missense_Mutation p.L4743P 0.38 probably_damaging(0.973) TCGA-CV-7235-01 1 248616736 248616736 C T OR2T2 Missense_Mutation p.S213F 0.06 deleterious(0.01) possibly_damaging(0.893) TCGA-CV-7235-01 1 36068938 36068938 C G PSMB2 Missense_Mutation p.S179T 0.17 tolerated(0.35) benign(0.002) TCGA-CV-7235-01 1 42645494 42645494 G A FOXJ3 Missense_Mutation p.H586Y 0.15 tolerated(0.27) possibly_damaging(0.628) TCGA-CV-7235-01 1 51439744 51439744 G C CDKN2C Silent p.G103G 0.09 TCGA-CV-7235-01 1 93306354 93306354 G A RPL5 Intron 0.15 TCGA-CV-7235-01 20 17462446 17462446 G C PCSK2 Missense_Mutation p.D550H 0.26 tolerated(0.06) possibly_damaging(0.528) TCGA-CV-7235-01 20 44006888 44006888 G T TP53TG5 5'UTR 0.19 TCGA-CV-7235-01 20 4680247 4680247 C A PRNP Silent p.G127G 0.46 TCGA-CV-7235-01 21 34926744 34926744 C T SON Missense_Mutation p.P1736L 0.22 possibly_damaging(0.726) TCGA-CV-7235-01 22 31485785 31485785 T C SMTN Missense_Mutation p.L191P 0.23 tolerated(0.09) possibly_damaging(0.853) TCGA-CV-7235-01 22 37098605 37098605 C G CACNG2 Missense_Mutation p.R6P 0.13 deleterious(0.02) probably_damaging(0.968) TCGA-CV-7235-01 2 100209981 100209984 GTTG - AFF3 Frame_Shift_Del p.N739Gfs*9 0.50 TCGA-CV-7235-01 2 101097599 101097599 G A NMS Silent p.A128A 0.16 TCGA-CV-7235-01 2 109086566 109086566 G C GCC2 Missense_Mutation p.A261P 0.21 tolerated(0.11) benign(0.261) TCGA-CV-7235-01 2 144764954 144764954 T A GTDC1 Missense_Mutation p.T224S 0.49 tolerated_low_confidence(0.71) benign(0) TCGA-CV-7235-01 2 152285383 152285383 A C RIF1 Missense_Mutation p.K291T 0.25 deleterious(0) probably_damaging(0.998) TCGA-CV-7235-01 2 160006935 160006935 G T TANC1 Missense_Mutation p.A184S 0.55 deleterious(0.03) possibly_damaging(0.459) TCGA-CV-7235-01 2 166894613 166894613 C A SCN1A Missense_Mutation p.W873C 0.13 deleterious(0) probably_damaging(1) TCGA-CV-7235-01 2 179552943 179552943 C G TTN Missense_Mutation p.E10736Q 0.09 TCGA-CV-7235-01 2 191862724 191862724 G A STAT1 Missense_Mutation p.H215Y 0.09 tolerated(0.17) benign(0.035) TCGA-CV-7235-01 2 192548983 192548983 A G NABP1 Missense_Mutation p.M136V 0.22 tolerated(0.57) benign(0) TCGA-CV-7235-01 2 201303979 201303979 A T SPATS2L Missense_Mutation p.T194S 0.53 tolerated(0.78) benign(0.307) TCGA-CV-7235-01 2 21224635 21224635 C G APOB Missense_Mutation p.K4553N 0.15 benign(0.006) TCGA-CV-7235-01 2 241492385 241492385 G A ANKMY1 Silent p.Y53Y 0.39 TCGA-CV-7235-01 2 96809549 96809549 G C DUSP2 3'UTR 0.21 TCGA-CV-7235-01 3 32398887 32398887 C T CMTM8 Missense_Mutation p.T57M 0.26 deleterious(0.04) benign(0.207) TCGA-CV-7235-01 3 64641512 64641512 T G ADAMTS9 Missense_Mutation p.I337L 0.75 deleterious(0) probably_damaging(0.951) TCGA-CV-7235-01 4 110980841 110980841 T G ELOVL6 Silent p.S97S 0.21 TCGA-CV-7235-01 4 114095604 114095604 C A ANK2 Silent p.A39A 0.16 TCGA-CV-7235-01 4 120427082 120427082 C T PDE5A Missense_Mutation p.R732Q 0.13 deleterious(0) probably_damaging(1) TCGA-CV-7235-01 4 164534666 164534666 A G MARCH1 Intron 0.42 TCGA-CV-7235-01 4 89583677 89583677 C T HERC3 Silent p.L414L 0.13 TCGA-CV-7235-01 4 89583679 89583679 C T HERC3 Missense_Mutation p.S415L 0.12 tolerated(0.35) benign(0) TCGA-CV-7235-01 4 96140364 96140364 G C UNC5C Missense_Mutation p.N467K 0.18 deleterious(0.02) possibly_damaging(0.49) TCGA-CV-7235-01 5 135388800 135388801 CA - TGFBI Frame_Shift_Del p.P373Rfs*8 0.19 TCGA-CV-7235-01 5 139903729 139903729 G T ANKHD1 Nonsense_Mutation p.E1466* 0.39 TCGA-CV-7235-01 5 140744 140744 T C PLEKHG4B Missense_Mutation p.S108P 0.14 tolerated(0.18) benign(0) TCGA-CV-7235-01 5 14758660 14758660 C T ANKH Missense_Mutation p.D121N 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7235-01 5 174156337 174156337 G T MSX2 Missense_Mutation p.Q185H 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-7235-01 5 3601208 3601208 A T IRX1 3'UTR 0.17 TCGA-CV-7235-01 5 52201636 52201636 C G ITGA1 Silent p.L451L 0.24 TCGA-CV-7235-01 5 66459360 66459360 G A MAST4 Silent p.S1451S 0.48 TCGA-CV-7235-01 5 7757570 7757570 C A ADCY2 Missense_Mutation p.S655R 0.42 tolerated(0.35) benign(0.002) TCGA-CV-7235-01 5 9066619 9066619 G T SEMA5A Missense_Mutation p.A738D 0.17 tolerated(0.31) benign(0.031) TCGA-CV-7235-01 6 10529730 10529730 C T GCNT2 Missense_Mutation p.P196S 0.52 deleterious(0) probably_damaging(1) TCGA-CV-7235-01 6 117641132 117641132 G C ROS1 Missense_Mutation p.L1947V 0.33 deleterious(0) probably_damaging(0.997) TCGA-CV-7235-01 6 150174187 150174187 G A LRP11 Silent p.V241V 0.32 TCGA-CV-7235-01 6 151694704 151694704 C T ZBTB2 Silent p.L23L 0.15 TCGA-CV-7235-01 6 170112526 170112526 C T PHF10 Missense_Mutation p.E305K 0.24 deleterious(0.04) benign(0.202) TCGA-CV-7235-01 6 26505323 26505323 T C BTN1A1 Missense_Mutation p.F200L 0.14 deleterious(0) possibly_damaging(0.876) TCGA-CV-7235-01 6 26638669 26638669 A G ZNF322 Missense_Mutation p.I38T 0.16 tolerated(1) benign(0.054) TCGA-CV-7235-01 6 27114581 27114581 G A HIST1H2BK 5'UTR 0.11 TCGA-CV-7235-01 6 28251760 28251760 G A PGBD1 Missense_Mutation p.G57E 0.50 tolerated_low_confidence(0.06) benign(0.125) TCGA-CV-7235-01 6 29796426 29796426 G T HLA-G Silent p.L150L 0.18 TCGA-CV-7235-01 6 30698343 30698343 C G FLOT1 Splice_Site p.X318_splice 0.19 TCGA-CV-7235-01 6 34101096 34101096 G A GRM4 Missense_Mutation p.R60W 0.13 deleterious(0) probably_damaging(0.997) TCGA-CV-7235-01 6 35436736 35436736 G T RPL10A Silent p.T31T 0.49 TCGA-CV-7235-01 6 36175199 36175199 G A BRPF3 Missense_Mutation p.R572K 0.12 deleterious(0) probably_damaging(0.992) TCGA-CV-7235-01 6 70386390 70386390 G A LMBRD1 Silent p.F487F 0.13 TCGA-CV-7235-01 6 7585071 7585071 A G DSP Missense_Mutation p.S2526G 0.20 benign(0.101) TCGA-CV-7235-01 7 100361512 100361512 G C ZAN Missense_Mutation p.R1357P 0.46 unknown(0) TCGA-CV-7235-01 7 1026395 1026395 G A CYP2W1 Missense_Mutation p.V261M 0.20 tolerated(0.24) benign(0.298) TCGA-CV-7235-01 7 130039885 130039885 T C CEP41 Missense_Mutation p.H323R 0.17 deleterious(0.03) benign(0.001) TCGA-CV-7235-01 7 142564288 142564288 C T EPHB6 Silent p.I504I 0.41 TCGA-CV-7235-01 7 23561386 23561386 C T TRA2A Missense_Mutation p.R37H 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.522) TCGA-CV-7235-01 7 82545296 82545296 A G PCLO Silent p.L4002L 0.44 TCGA-CV-7235-01 7 89854672 89854672 T C STEAP2 Silent p.A92A 0.46 TCGA-CV-7235-01 7 90547015 90547015 G T CDK14 Missense_Mutation p.G250W 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7235-01 7 92761382 92761382 C T SAMD9L Silent p.R1301R 0.29 TCGA-CV-7235-01 7 98984357 98984357 C T ARPC1B Silent p.S38S 0.14 TCGA-CV-7235-01 7 99170398 99170398 C G ZNF655 Missense_Mutation p.Q258E 0.11 deleterious(0.03) benign(0.092) TCGA-CV-7235-01 8 113599348 113599348 C G CSMD3 Missense_Mutation p.G1278R 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7235-01 8 144891191 144891191 G A SCRIB Missense_Mutation p.T568M 0.19 probably_damaging(0.999) TCGA-CV-7235-01 8 145649184 145649184 G T VPS28 3'UTR 0.07 TCGA-CV-7235-01 8 30695359 30695359 T G TEX15 Missense_Mutation p.N2431T 0.28 deleterious(0.01) benign(0.306) TCGA-CV-7235-01 8 72229804 72229804 T C EYA1 Missense_Mutation p.Y180C 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-7235-01 8 87454892 87454892 A G WWP1 Missense_Mutation p.Y628C 0.32 deleterious(0) probably_damaging(1) TCGA-CV-7235-01 8 95531705 95531705 C G KIAA1429 Splice_Site p.X674_splice 0.14 TCGA-CV-7235-01 9 103063054 103063054 A G INVS 3'UTR 0.80 TCGA-CV-7235-01 9 116136605 116136605 C T HDHD3 Silent p.L10L 0.16 TCGA-CV-7235-01 9 117044557 117044557 G C COL27A1 Missense_Mutation p.G1240R 0.63 probably_damaging(1) TCGA-CV-7235-01 9 119461761 119461761 C T TRIM32 Silent p.G580G 0.64 TCGA-CV-7235-01 9 130684360 130684360 C G PIP5KL1 Silent p.S317S 0.20 TCGA-CV-7235-01 9 77286707 77286707 C A RORB Silent p.R372R 0.56 TCGA-CV-7235-01 9 79917956 79917956 A G VPS13A Missense_Mutation p.N1313S 0.67 tolerated(0.68) benign(0.004) TCGA-CV-7235-01 X 105868408 105868408 T - CXorf57 Frame_Shift_Del p.G293Vfs*2 0.32 TCGA-CV-7235-01 X 34148619 34148619 C A FAM47A Nonsense_Mutation p.E593* 0.44 TCGA-CV-7236-01 10 96014690 96014690 C A PLCE1 Silent p.S1146S 0.10 TCGA-CV-7236-01 11 1262890 1262890 C T MUC5B Missense_Mutation p.R1594W 0.12 unknown(0) TCGA-CV-7236-01 11 30255210 30255210 G A FSHB Missense_Mutation p.A85T 0.09 tolerated(0.06) benign(0.046) TCGA-CV-7236-01 11 57982768 57982768 C A OR1S1 Missense_Mutation p.H184Q 0.23 tolerated(0.18) benign(0.006) TCGA-CV-7236-01 11 64572117 64572117 G A MEN1 Nonsense_Mutation p.Q513* 0.08 TCGA-CV-7236-01 11 6977595 6977595 C T ZNF215 Nonsense_Mutation p.Q463* 0.07 TCGA-CV-7236-01 12 101988804 101988804 G A MYBPC1 5'UTR 0.10 TCGA-CV-7236-01 12 26217656 26217656 C - RASSF8 Frame_Shift_Del p.A110Vfs*3 0.09 TCGA-CV-7236-01 12 50191005 50191005 C A NCKAP5L Missense_Mutation p.R213L 0.08 tolerated(0.08) benign(0.239) TCGA-CV-7236-01 12 64661051 64661051 G A C12orf56 Missense_Mutation p.P434L 0.19 tolerated(0.11) probably_damaging(0.977) TCGA-CV-7236-01 13 25875965 25875965 C T NUPL1 Silent p.A18A 0.09 TCGA-CV-7236-01 13 92346021 92346021 C T GPC5 Silent p.L302L 0.17 TCGA-CV-7236-01 14 20296100 20296100 C T OR4N2 Missense_Mutation p.R165C 0.05 tolerated(0.1) benign(0.052) TCGA-CV-7236-01 14 23891477 23891477 G A MYH7 Missense_Mutation p.R1053W 0.12 deleterious(0) probably_damaging(1) TCGA-CV-7236-01 14 61952305 61952305 G A PRKCH Missense_Mutation p.R455Q 0.15 deleterious(0) possibly_damaging(0.897) TCGA-CV-7236-01 14 74757040 74757040 C T ABCD4 Silent p.K427K 0.17 TCGA-CV-7236-01 14 96829296 96829296 C G ATG2B Silent p.S6S 0.10 TCGA-CV-7236-01 15 40954309 40954309 C T CASC5 Silent p.L2318L 0.17 TCGA-CV-7236-01 15 89698752 89698752 C T ABHD2 Silent p.R175R 0.22 TCGA-CV-7236-01 17 72851194 72851194 G A GRIN2C Missense_Mutation p.S13L 0.25 tolerated_low_confidence(1) benign(0.002) TCGA-CV-7236-01 17 7578503 7578503 C T TP53 Missense_Mutation p.V143M 0.18 deleterious(0) probably_damaging(1) TCGA-CV-7236-01 18 70532113 70532113 T C NETO1 Silent p.G50G 0.16 TCGA-CV-7236-01 19 12866479 12866479 C T BEST2 Silent p.R255R 0.15 TCGA-CV-7236-01 19 42847639 42847639 G A MEGF8 Silent p.A508A 0.12 TCGA-CV-7236-01 19 42914528 42914528 G C LIPE Silent p.T450T 0.10 TCGA-CV-7236-01 19 45762439 45762439 G A MARK4 Missense_Mutation p.G82S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7236-01 19 50805052 50805052 C T MYH14 Silent p.A1868A 0.12 TCGA-CV-7236-01 19 55670685 55670685 G A DNAAF3 Silent p.S524S 0.15 TCGA-CV-7236-01 1 1191442 1191443 AT - UBE2J2 Frame_Shift_Del p.L175Ffs*3 0.15 TCGA-CV-7236-01 1 158621162 158621162 G A SPTA1 Missense_Mutation p.R1158W 0.10 deleterious(0) probably_damaging(0.94) TCGA-CV-7236-01 1 215847770 215847770 G A USH2A Missense_Mutation p.R4495C 0.14 benign(0.01) TCGA-CV-7236-01 1 236646078 236646078 A G EDARADD 3'Flank 0.21 TCGA-CV-7236-01 1 44433123 44433123 G A IPO13 Missense_Mutation p.R917H 0.12 tolerated(0.26) benign(0.022) TCGA-CV-7236-01 1 86850380 86850382 AAG - ODF2L In_Frame_Del p.L117del 0.09 TCGA-CV-7236-01 20 31385069 31385069 G T DNMT3B Missense_Mutation p.R485L 0.11 tolerated(0.18) benign(0.011) TCGA-CV-7236-01 20 45839455 45839455 G A ZMYND8 Missense_Mutation p.T1173M 0.11 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-CV-7236-01 22 21799898 21799898 C T HIC2 Silent p.S238S 0.15 TCGA-CV-7236-01 22 24982181 24982181 C T FAM211B Silent p.L207L 0.20 TCGA-CV-7236-01 2 176947144 176947144 G A EVX2 Missense_Mutation p.T154M 0.11 deleterious(0.05) possibly_damaging(0.502) TCGA-CV-7236-01 2 179411521 179411521 C T TTN Missense_Mutation p.R31545H 0.16 TCGA-CV-7236-01 2 31590832 31590834 ACA - XDH In_Frame_Del p.V731del 0.16 TCGA-CV-7236-01 3 14942543 14942543 G A FGD5 Missense_Mutation p.R1080H 0.17 tolerated(0.57) benign(0.152) TCGA-CV-7236-01 3 167240197 167240197 T A WDR49 Nonsense_Mutation p.K542* 0.33 TCGA-CV-7236-01 3 369940 369940 C T CHL1 Silent p.N96N 0.14 TCGA-CV-7236-01 4 111398075 111398075 G A ENPEP Missense_Mutation p.V169M 0.17 deleterious(0.03) probably_damaging(0.915) TCGA-CV-7236-01 4 160251524 160251524 G A RAPGEF2 Silent p.E286E 0.16 TCGA-CV-7236-01 4 174449919 174449919 G A HAND2 Silent p.T174T 0.29 TCGA-CV-7236-01 6 27114571 27114571 C T HIST1H2BK Missense_Mutation p.E3K 0.08 deleterious_low_confidence(0.03) unknown(0) TCGA-CV-7236-01 6 56471494 56471494 C T DST Intron 0.13 TCGA-CV-7236-01 7 149152729 149152729 C T ZNF777 Missense_Mutation p.V129I 0.12 tolerated_low_confidence(0.11) benign(0) TCGA-CV-7236-01 7 150094922 150094922 C T ZNF775 Silent p.C451C 0.25 TCGA-CV-7236-01 7 37988614 37988614 G A EPDR1 Missense_Mutation p.V148I 0.07 deleterious(0.04) benign(0.206) TCGA-CV-7236-01 7 72418901 72418901 G A POM121 Silent p.P964P 0.13 TCGA-CV-7236-01 8 144993755 144993755 C T PLEC Missense_Mutation p.A3549T 0.23 probably_damaging(0.99) TCGA-CV-7236-01 8 70585202 70585202 C T SLCO5A1 Missense_Mutation p.A817T 0.11 tolerated_low_confidence(1) benign(0) TCGA-CV-7236-01 8 76471035 76471035 G A HNF4G Splice_Site p.X286_splice 0.31 TCGA-CV-7236-01 9 113431161 113431161 G A MUSK 5'UTR 0.13 TCGA-CV-7236-01 9 131019939 131019939 G T GOLGA2 Silent p.R860R 0.08 TCGA-CV-7236-01 9 134458080 134458080 C T RAPGEF1 Missense_Mutation p.E974K 0.18 deleterious(0) possibly_damaging(0.566) TCGA-CV-7236-01 9 139412252 139412252 C T NOTCH1 Missense_Mutation p.A465T 0.22 deleterious(0) probably_damaging(0.957) TCGA-CV-7236-01 9 99521423 99521423 C T ZNF510 Silent p.Q563Q 0.07 TCGA-CV-7236-01 X 48887360 48887360 C A TFE3 3'UTR 0.06 TCGA-CV-7236-01 X 54263432 54263434 CAC - WNK3 In_Frame_Del p.S1522_D1523delinsN 0.12 TCGA-CV-7236-01 X 78217018 78217018 G C P2RY10 Missense_Mutation p.G334A 0.12 tolerated(1) benign(0.01) TCGA-CV-7238-01 10 1087328 1087328 C G IDI1 Missense_Mutation p.L218F 0.28 deleterious(0.02) probably_damaging(0.967) TCGA-CV-7238-01 10 50531131 50531131 G C C10orf71 Missense_Mutation p.E181Q 0.27 tolerated(0.13) probably_damaging(0.928) TCGA-CV-7238-01 10 89692805 89692805 C T PTEN Nonsense_Mutation p.Q97* 0.31 TCGA-CV-7238-01 11 116661095 116661095 G A APOA5 Nonsense_Mutation p.R284* 0.11 TCGA-CV-7238-01 11 118375875 118375875 C T KMT2A Missense_Mutation p.P3090S 0.10 probably_damaging(0.998) TCGA-CV-7238-01 11 84028042 84028042 C T DLG2 Intron 0.09 TCGA-CV-7238-01 12 123875278 123875278 T G SETD8 Missense_Mutation p.H78Q 0.08 deleterious(0.03) benign(0.012) TCGA-CV-7238-01 12 63541189 63541189 C T AVPR1A Missense_Mutation p.D403N 0.06 deleterious(0.02) benign(0.084) TCGA-CV-7238-01 13 113479843 113479843 G A ATP11A Silent p.R324R 0.21 TCGA-CV-7238-01 14 29237514 29237514 C T FOXG1 Silent p.S343S 0.12 TCGA-CV-7238-01 15 35148965 35148965 G A AQR 3'UTR 0.17 TCGA-CV-7238-01 15 63978682 63978682 G A HERC1 Missense_Mutation p.S2034F 0.11 possibly_damaging(0.83) TCGA-CV-7238-01 15 76449066 76449066 C G C15orf27 Missense_Mutation p.L117V 0.08 tolerated(0.09) probably_damaging(0.996) TCGA-CV-7238-01 16 22161162 22161162 G A VWA3A Silent p.V1013V 0.25 TCGA-CV-7238-01 16 84492766 84492766 A - ATP2C2 Frame_Shift_Del p.N731Tfs*7 0.09 TCGA-CV-7238-01 17 11757554 11757554 C T DNAH9 Missense_Mutation p.P3248S 0.07 possibly_damaging(0.9) TCGA-CV-7238-01 17 27958010 27958010 A T SSH2 Missense_Mutation p.V1374E 0.11 deleterious_low_confidence(0.01) benign(0.028) TCGA-CV-7238-01 17 43351864 43351864 G A MAP3K14 RNA 0.11 TCGA-CV-7238-01 17 74740437 74740437 C T MFSD11 Missense_Mutation p.T177M 0.11 tolerated(0.09) possibly_damaging(0.556) TCGA-CV-7238-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.11 TCGA-CV-7238-01 19 35660502 35660502 G T FXYD5 Missense_Mutation p.R174L 0.16 deleterious(0) probably_damaging(0.993) TCGA-CV-7238-01 19 53015554 53015554 C T ZNF578 3'Flank 0.11 TCGA-CV-7238-01 19 54783667 54783667 G A LILRB2 Missense_Mutation p.P112S 0.06 tolerated(0.05) possibly_damaging(0.88) TCGA-CV-7238-01 1 11087433 11087433 T C MASP2 Missense_Mutation p.T524A 0.09 tolerated(0.58) benign(0.002) TCGA-CV-7238-01 1 161166278 161166278 C T ADAMTS4 Intron 0.11 TCGA-CV-7238-01 1 27100152 27100152 G A ARID1A Silent p.S1316S 0.16 TCGA-CV-7238-01 1 36937036 36937036 C T CSF3R Missense_Mutation p.R428K 0.09 tolerated(0.93) benign(0.003) TCGA-CV-7238-01 1 86173364 86173364 C T ZNHIT6 Missense_Mutation p.E202K 0.05 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-CV-7238-01 20 3027084 3027084 G A MRPS26 Missense_Mutation p.R93H 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7238-01 20 46291926 46291926 T C SULF2 Missense_Mutation p.N753S 0.05 deleterious(0) benign(0.354) TCGA-CV-7238-01 21 26961175 26961175 T C MRPL39 Missense_Mutation p.D314G 0.05 tolerated(0.5) benign(0.098) TCGA-CV-7238-01 21 45948404 45948404 A G TSPEAR Missense_Mutation p.F285L 0.16 tolerated(1) benign(0.003) TCGA-CV-7238-01 2 167142859 167142859 G A SCN9A Missense_Mutation p.S530F 0.08 tolerated(0.13) benign(0.024) TCGA-CV-7238-01 2 202093772 202093772 G A CASP10 Missense_Mutation p.R511Q 0.07 tolerated(0.4) benign(0.004) TCGA-CV-7238-01 2 27801709 27801709 G A C2orf16 Missense_Mutation p.G757E 0.07 tolerated(1) benign(0.203) TCGA-CV-7238-01 2 90259969 90259969 C A IGKV1D-8 Silent p.I24I 0.08 TCGA-CV-7238-01 3 129695951 129695951 C T TRH Silent p.G207G 0.12 TCGA-CV-7238-01 3 130281957 130281957 G A COL6A6 Missense_Mutation p.R37H 0.07 tolerated(1) benign(0) TCGA-CV-7238-01 3 139078167 139078167 G A COPB2 Missense_Mutation p.R750W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-7238-01 3 158402350 158402350 G C GFM1 Missense_Mutation p.G601A 0.12 deleterious(0) probably_damaging(0.995) TCGA-CV-7238-01 3 197402348 197402348 C T KIAA0226 Silent p.Q895Q 0.10 TCGA-CV-7238-01 3 64582598 64582598 C T ADAMTS9 Missense_Mutation p.A1363T 0.14 deleterious(0.03) possibly_damaging(0.821) TCGA-CV-7238-01 3 74350658 74350658 T A CNTN3 Silent p.V662V 0.09 TCGA-CV-7238-01 4 170523716 170523716 T - NEK1 Frame_Shift_Del p.K22Nfs*37 0.10 TCGA-CV-7238-01 5 150924339 150924339 G A FAT2 Nonsense_Mutation p.R2117* 0.08 TCGA-CV-7238-01 5 171520515 171520515 C T STK10 Silent p.S485S 0.09 TCGA-CV-7238-01 5 24487732 24487732 G C CDH10 3'UTR 0.07 TCGA-CV-7238-01 5 39134377 39134377 G T FYB Missense_Mutation p.P594T 0.13 tolerated(0.47) benign(0.005) TCGA-CV-7238-01 5 95018550 95018550 G C SPATA9 Missense_Mutation p.I3M 0.10 tolerated(0.05) benign(0.366) TCGA-CV-7238-01 6 118812962 118812962 C G CEP85L Missense_Mutation p.G445R 0.07 tolerated(0.37) benign(0.109) TCGA-CV-7238-01 6 129641784 129641784 C T LAMA2 Missense_Mutation p.S1387F 0.11 deleterious(0.02) probably_damaging(0.95) TCGA-CV-7238-01 6 32032668 32032668 C T TNXB Silent p.K2257K 0.11 TCGA-CV-7238-01 6 51920457 51920457 G A PKHD1 Silent p.L588L 0.07 TCGA-CV-7238-01 7 142919246 142919246 C T AC073342.1 Missense_Mutation p.G39R 0.12 benign(0) TCGA-CV-7238-01 7 149318492 149318492 C G ZNF767 RNA 0.14 TCGA-CV-7238-01 7 150070060 150070060 G C REPIN1 3'Flank 0.14 TCGA-CV-7238-01 7 33185888 33185888 T C BBS9 Silent p.D8D 0.11 TCGA-CV-7238-01 7 45717468 45717468 C T ADCY1 Missense_Mutation p.R536W 0.12 deleterious(0) probably_damaging(0.976) TCGA-CV-7238-01 7 76940734 76940734 C T GSAP Missense_Mutation p.D836N 0.08 tolerated(0.28) probably_damaging(0.999) TCGA-CV-7238-01 7 89915641 89915641 C G C7orf63 Silent p.A528A 0.08 TCGA-CV-7238-01 7 92731813 92731813 C T SAMD9 Missense_Mutation p.E1200K 0.11 deleterious(0) probably_damaging(0.957) TCGA-CV-7238-01 8 133152401 133152401 G A KCNQ3 Missense_Mutation p.A497V 0.30 tolerated(0.64) benign(0.01) TCGA-CV-7238-01 8 68007559 68007559 G A CSPP1 Missense_Mutation p.G181D 0.17 tolerated(0.15) benign(0.197) TCGA-CV-7238-01 8 74893475 74893475 A C TMEM70 Missense_Mutation p.E134D 0.23 tolerated(0.65) benign(0.288) TCGA-CV-7238-01 9 121929389 121929389 C T BRINP1 Silent p.S753S 0.14 TCGA-CV-7238-01 9 139407533 139407533 G A NOTCH1 Nonsense_Mutation p.Q803* 0.22 TCGA-CV-7238-01 X 135754234 135754234 C A ARHGEF6 Nonsense_Mutation p.E694* 0.08 TCGA-CV-7238-01 X 32380923 32380923 G T DMD Missense_Mutation p.H1769Q 0.09 benign(0.402) TCGA-CV-7238-01 X 63410343 63410343 G A AMER1 Nonsense_Mutation p.R942* 0.12 TCGA-CV-7238-01 X 69510347 69510347 G A KIF4A Silent p.A13A 0.13 TCGA-CV-7238-01 X 73812879 73812879 C T RLIM Missense_Mutation p.D91N 0.09 tolerated(0.34) unknown(0) TCGA-CV-7242-01 10 102089669 102089669 G T PKD2L1 Silent p.T64T 0.13 TCGA-CV-7242-01 10 104173584 104173584 G T PSD Missense_Mutation p.P499T 0.21 tolerated(0.57) benign(0.001) TCGA-CV-7242-01 10 112328765 112328765 G A SMC3 Missense_Mutation p.V29M 0.51 deleterious(0) probably_damaging(0.992) TCGA-CV-7242-01 10 11505159 11505159 C T USP6NL Missense_Mutation p.A607T 0.40 tolerated_low_confidence(0.37) benign(0.005) TCGA-CV-7242-01 10 122624702 122624702 G T WDR11 Missense_Mutation p.R286L 0.27 deleterious(0.01) possibly_damaging(0.509) TCGA-CV-7242-01 10 124339338 124339338 C T DMBT1 Silent p.S308S 0.31 TCGA-CV-7242-01 10 14976392 14976392 T A DCLRE1C Missense_Mutation p.E222V 0.20 deleterious(0) possibly_damaging(0.544) TCGA-CV-7242-01 10 25887011 25887011 G T GPR158 Missense_Mutation p.S819I 0.14 deleterious(0) probably_damaging(0.963) TCGA-CV-7242-01 10 26802519 26802519 C G APBB1IP Missense_Mutation p.T248R 0.16 deleterious(0) probably_damaging(0.996) TCGA-CV-7242-01 10 51585571 51585571 A T NCOA4 Missense_Mutation p.D573V 0.33 deleterious(0) probably_damaging(0.965) TCGA-CV-7242-01 10 62648688 62648688 T A RHOBTB1 Silent p.P246P 0.23 TCGA-CV-7242-01 10 75276690 75276690 G A USP54 Missense_Mutation p.P1165L 0.29 tolerated_low_confidence(0.09) benign(0.004) TCGA-CV-7242-01 10 79163662 79163662 C A KCNMA1 Silent p.A166A 0.20 TCGA-CV-7242-01 10 97023620 97023620 C T PDLIM1 Splice_Site p.X178_splice 0.09 TCGA-CV-7242-01 10 97366328 97366328 G A ALDH18A1 3'UTR 0.38 TCGA-CV-7242-01 11 108383615 108383615 C A EXPH5 Silent p.S873S 0.26 TCGA-CV-7242-01 11 113630936 113630936 G C ZW10 Nonsense_Mutation p.S192* 0.28 TCGA-CV-7242-01 11 117869498 117869498 C A IL10RA Silent p.I293I 0.22 TCGA-CV-7242-01 11 118122936 118122938 CCC A MPZL3 Splice_Site p.X24_splice 0.15 TCGA-CV-7242-01 11 118850289 118850289 C G FOXR1 Silent p.P174P 0.14 TCGA-CV-7242-01 11 123901012 123901012 G T OR10G8 Missense_Mutation p.R228L 0.26 deleterious(0.01) benign(0.417) TCGA-CV-7242-01 11 123901065 123901065 G A OR10G8 Missense_Mutation p.V246M 0.18 deleterious(0.02) benign(0.265) TCGA-CV-7242-01 11 133714155 133714155 C G SPATA19 Missense_Mutation p.Q115H 0.36 deleterious(0) possibly_damaging(0.891) TCGA-CV-7242-01 11 134240963 134240963 A T GLB1L2 Missense_Mutation p.Q426L 0.19 deleterious(0.02) possibly_damaging(0.728) TCGA-CV-7242-01 11 30253578 30253578 C T FSHB Silent p.T43T 0.23 TCGA-CV-7242-01 11 31086673 31086673 G C DCDC1 Missense_Mutation p.L776V 0.18 tolerated(0.28) probably_damaging(0.953) TCGA-CV-7242-01 11 40136707 40136707 G T LRRC4C Missense_Mutation p.T379K 0.20 tolerated(0.38) possibly_damaging(0.902) TCGA-CV-7242-01 11 46341851 46341851 C T CREB3L1 Missense_Mutation p.A432V 0.18 tolerated(0.12) benign(0.002) TCGA-CV-7242-01 11 4935987 4935987 G A OR51G2 Nonsense_Mutation p.Q303* 0.35 TCGA-CV-7242-01 11 5510098 5510098 G C OR52D1 Missense_Mutation p.M54I 0.24 deleterious(0.04) benign(0) TCGA-CV-7242-01 11 5530436 5530436 G T UBQLN3 Missense_Mutation p.P118H 0.28 deleterious(0) probably_damaging(0.938) TCGA-CV-7242-01 11 56468409 56468409 C T OR9G1 Silent p.P182P 0.17 TCGA-CV-7242-01 11 58207588 58207588 C A OR5B12 Missense_Mutation p.V13L 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-CV-7242-01 11 58477208 58477208 G C GLYAT 3'UTR 0.27 TCGA-CV-7242-01 11 5968729 5968729 G T OR56A3 Missense_Mutation p.M51I 0.20 tolerated(1) benign(0) TCGA-CV-7242-01 11 6048387 6048387 T A OR56A1 Missense_Mutation p.N183I 0.32 deleterious(0) probably_damaging(0.93) TCGA-CV-7242-01 11 62284353 62284353 C A AHNAK Missense_Mutation p.G5846C 0.23 probably_damaging(0.946) TCGA-CV-7242-01 11 6477901 6477901 C G TRIM3 Missense_Mutation p.G352A 0.24 deleterious(0.05) probably_damaging(0.921) TCGA-CV-7242-01 11 65113793 65113793 G - DPF2 Frame_Shift_Del p.C327Sfs*52 0.22 TCGA-CV-7242-01 11 67275066 67275066 C A CDK2AP2 Silent p.V59V 0.17 TCGA-CV-7242-01 11 6867169 6867169 C A OR10A5 Missense_Mutation p.L86M 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7242-01 11 68748190 68748190 G T MRGPRD Missense_Mutation p.P89H 0.26 tolerated(0.39) probably_damaging(0.943) TCGA-CV-7242-01 11 7960256 7960256 T C OR10A3 Missense_Mutation p.K271R 0.15 tolerated(0.07) probably_damaging(1) TCGA-CV-7242-01 11 89392880 89392880 T A FOLH1B RNA 0.18 TCGA-CV-7242-01 11 89902135 89902135 T A NAALAD2 Nonsense_Mutation p.Y439* 0.31 TCGA-CV-7242-01 12 100657483 100657483 A G DEPDC4 Missense_Mutation p.S116P 0.22 tolerated(0.22) probably_damaging(0.998) TCGA-CV-7242-01 12 101442142 101442142 A T ANO4 Silent p.G390G 0.22 TCGA-CV-7242-01 12 102433723 102433723 T C CCDC53 Missense_Mutation p.S120G 0.22 tolerated(0.13) benign(0.008) TCGA-CV-7242-01 12 10279171 10279171 T A CLEC7A Silent p.T113T 0.25 TCGA-CV-7242-01 12 10319426 10319426 C T OLR1 Silent p.K103K 0.21 TCGA-CV-7242-01 12 104171452 104171452 T A NT5DC3 3'UTR 0.25 TCGA-CV-7242-01 12 105260336 105260336 G A SLC41A2 Missense_Mutation p.P350L 0.18 tolerated(0.12) benign(0.003) TCGA-CV-7242-01 12 112605241 112605241 C G HECTD4 Silent p.P3992P 0.23 TCGA-CV-7242-01 12 113541858 113541858 G T RASAL1 Nonsense_Mutation p.S667* 0.16 TCGA-CV-7242-01 12 122396265 122396265 G A WDR66 Silent p.K606K 0.22 TCGA-CV-7242-01 12 133435715 133435715 C T CHFR Missense_Mutation p.D296N 0.22 deleterious(0.04) possibly_damaging(0.45) TCGA-CV-7242-01 12 133682776 133682776 G T ZNF140 Nonsense_Mutation p.E305* 0.29 TCGA-CV-7242-01 12 21457428 21457428 G T SLCO1A2 Silent p.P174P 0.34 TCGA-CV-7242-01 12 309926 309926 G T SLC6A12 Nonsense_Mutation p.S201* 0.26 TCGA-CV-7242-01 12 40714839 40714839 G T LRRK2 Missense_Mutation p.L1673F 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 12 40728910 40728910 A T LRRK2 Missense_Mutation p.T1967S 0.29 tolerated(0.41) probably_damaging(0.999) TCGA-CV-7242-01 12 45429852 45429852 G T DBX2 Missense_Mutation p.A150E 0.14 deleterious(0.04) benign(0.016) TCGA-CV-7242-01 12 4647951 4647951 C A RAD51AP1 5'Flank 0.42 TCGA-CV-7242-01 12 52115638 52115638 G T SCN8A Silent p.V648V 0.19 TCGA-CV-7242-01 12 54115880 54115880 G A CALCOCO1 Nonsense_Mutation p.R180* 0.28 TCGA-CV-7242-01 12 55615418 55615418 C T OR10A7 Missense_Mutation p.L204F 0.27 deleterious(0.05) benign(0.151) TCGA-CV-7242-01 12 65085357 65085357 G A RASSF3 Missense_Mutation p.E189K 0.20 deleterious(0) probably_damaging(0.927) TCGA-CV-7242-01 12 78400711 78400711 C A NAV3 Missense_Mutation p.P465T 0.18 tolerated(0.07) possibly_damaging(0.894) TCGA-CV-7242-01 12 8048229 8048229 C A NANOGP1 RNA 0.31 TCGA-CV-7242-01 12 88487640 88487640 C A CEP290 Silent p.R1072R 0.31 TCGA-CV-7242-01 12 99793503 99793503 T A ANKS1B Silent p.T554T 0.25 TCGA-CV-7242-01 13 24200851 24200851 A G TNFRSF19 Missense_Mutation p.Y122C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 13 31711555 31711555 T C HSPH1 Missense_Mutation p.E826G 0.27 tolerated(0.21) benign(0) TCGA-CV-7242-01 13 46661882 46661882 C A CPB2 Nonsense_Mutation p.E50* 0.42 TCGA-CV-7242-01 13 96086058 96086058 G T CLDN10 5'UTR 0.29 TCGA-CV-7242-01 14 101520698 101520698 C A MIR382 RNA 0.43 TCGA-CV-7242-01 14 105410208 105418127 14:105410208-105418127 - AHNAK2 large deletion p.E1221_L3860del 0.09 TCGA-CV-7242-01 14 106830017 106830017 T A IGHV4-34 Missense_Mutation p.H10L 0.17 tolerated(0.66) benign(0.012) TCGA-CV-7242-01 14 20874489 20874489 C T TEP1 Missense_Mutation p.G213E 0.22 tolerated(0.33) benign(0.124) TCGA-CV-7242-01 14 22434099 22434099 C G TRAV12-3 Missense_Mutation p.A51G 0.24 tolerated(0.07) benign(0.112) TCGA-CV-7242-01 14 24543809 24543809 G C CPNE6 Missense_Mutation p.V190L 0.11 deleterious(0.02) possibly_damaging(0.823) TCGA-CV-7242-01 14 35072621 35072621 C T SNX6 Missense_Mutation p.R162H 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CV-7242-01 14 36003398 36003398 C A INSM2 5'UTR 0.21 TCGA-CV-7242-01 14 62547693 62547693 G C SYT16 Missense_Mutation p.D379H 0.21 deleterious(0) probably_damaging(0.928) TCGA-CV-7242-01 14 77929012 77929012 C T AHSA1 Missense_Mutation p.P128S 0.24 tolerated(0.3) probably_damaging(0.965) TCGA-CV-7242-01 14 88401201 88401201 G C GALC Missense_Mutation p.L645V 0.26 tolerated(0.2) benign(0.013) TCGA-CV-7242-01 14 91084371 91084371 C T TTC7B Silent p.V590V 0.35 TCGA-CV-7242-01 14 93125658 93125658 C G RIN3 Missense_Mutation p.L727V 0.23 deleterious(0) probably_damaging(0.998) TCGA-CV-7242-01 14 93581573 93581573 G C ITPK1 5'UTR 0.40 TCGA-CV-7242-01 15 23049038 23049038 C A NIPA1 Missense_Mutation p.G261W 0.33 deleterious(0.03) probably_damaging(0.98) TCGA-CV-7242-01 15 23811310 23811310 C G MKRN3 Silent p.A127A 0.38 TCGA-CV-7242-01 15 27185148 27185148 C G GABRA5 Silent p.P267P 0.38 TCGA-CV-7242-01 15 31253125 31253125 C A MTMR10 Missense_Mutation p.W239C 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 15 32460234 32460234 C T CHRNA7 Missense_Mutation p.R391W 0.30 deleterious(0.02) possibly_damaging(0.849) TCGA-CV-7242-01 15 34646693 34646693 G C NUTM1 Silent p.R346R 0.28 TCGA-CV-7242-01 15 43621835 43621835 G A LCMT2 Missense_Mutation p.R285W 0.27 tolerated(0.07) benign(0.009) TCGA-CV-7242-01 15 43928002 43928002 C A CATSPER2 Missense_Mutation p.R348S 0.35 deleterious(0) possibly_damaging(0.878) TCGA-CV-7242-01 15 56683602 56683602 A T TEX9 Missense_Mutation p.N186I 0.27 deleterious(0.04) benign(0.17) TCGA-CV-7242-01 15 62242607 62242607 C A VPS13C Missense_Mutation p.D1516Y 0.25 deleterious(0) possibly_damaging(0.594) TCGA-CV-7242-01 15 66249955 66249955 G T MEGF11 Missense_Mutation p.P406H 0.29 tolerated(0.65) benign(0.063) TCGA-CV-7242-01 15 77425541 77425541 T A PEAK1 Missense_Mutation p.T1295S 0.28 deleterious(0.05) benign(0.005) TCGA-CV-7242-01 15 88669548 88669548 G A NTRK3 Silent p.F450F 0.28 TCGA-CV-7242-01 15 99251053 99251053 C A IGF1R Silent p.I119I 0.55 TCGA-CV-7242-01 16 12009941 12009941 G T GSPT1 5'Flank 0.22 TCGA-CV-7242-01 16 21261971 21261971 C T ANKS4B Missense_Mutation p.P362S 0.30 tolerated(0.15) probably_damaging(0.969) TCGA-CV-7242-01 16 30745886 30745886 G A SRCAP Missense_Mutation p.E2227K 0.26 benign(0.425) TCGA-CV-7242-01 16 31228118 31228118 T C PYDC1 Missense_Mutation p.M78V 0.22 tolerated(0.12) benign(0.034) TCGA-CV-7242-01 16 58325037 58325037 C T PRSS54 Missense_Mutation p.C30Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 16 58568212 58568212 G A CNOT1 Missense_Mutation p.R1912C 0.19 deleterious(0) probably_damaging(0.917) TCGA-CV-7242-01 16 67660581 67660581 G T CTCF Missense_Mutation p.R494L 0.20 tolerated(0.07) probably_damaging(0.986) TCGA-CV-7242-01 16 75513529 75513529 G C CHST6 Silent p.V66V 0.26 TCGA-CV-7242-01 16 77353779 77353779 C G ADAMTS18 Silent p.A833A 0.17 TCGA-CV-7242-01 16 80638278 80638278 G T CDYL2 3'UTR 0.25 TCGA-CV-7242-01 16 81712034 81712034 G C CMIP Missense_Mutation p.V397L 0.46 tolerated_low_confidence(0.2) possibly_damaging(0.736) TCGA-CV-7242-01 16 8851634 8851634 C G ABAT Missense_Mutation p.L113V 0.19 tolerated(0.15) benign(0.004) TCGA-CV-7242-01 16 88688786 88688786 A T ZC3H18 Missense_Mutation p.N553Y 0.16 deleterious_low_confidence(0) unknown(0) TCGA-CV-7242-01 16 90160878 90160878 C T TUBB8P7 RNA 0.30 TCGA-CV-7242-01 17 29326072 29326072 G T RNF135 Missense_Mutation p.A388S 0.07 tolerated(0.2) possibly_damaging(0.533) TCGA-CV-7242-01 17 37884229 37884229 C T ERBB2 Missense_Mutation p.P1234S 0.14 tolerated(0.18) benign(0.004) TCGA-CV-7242-01 17 38508182 38508184 AAG - RARA In_Frame_Del p.K167del 0.28 TCGA-CV-7242-01 17 40933194 40933194 A G WNK4 Missense_Mutation p.M160V 0.27 tolerated(1) unknown(0) TCGA-CV-7242-01 17 45901757 45901757 C T MRPL10 Silent p.L210L 0.35 TCGA-CV-7242-01 17 48268775 48268775 G A COL1A1 Missense_Mutation p.A735V 0.27 possibly_damaging(0.894) TCGA-CV-7242-01 17 51901021 51901021 G C KIF2B Silent p.P209P 0.14 TCGA-CV-7242-01 17 67218001 67218001 A G ABCA10 Missense_Mutation p.Y79H 0.35 tolerated(0.12) benign(0.021) TCGA-CV-7242-01 17 704121 704121 G A NXN 3'UTR 0.31 TCGA-CV-7242-01 17 72959062 72959062 C T HID1 Missense_Mutation p.V168M 0.18 tolerated(0.12) benign(0.039) TCGA-CV-7242-01 17 7578413 7578413 C T TP53 Missense_Mutation p.V173M 0.36 deleterious(0.02) probably_damaging(1) TCGA-CV-7242-01 17 78011950 78011950 G C CCDC40 Missense_Mutation p.E20Q 0.11 tolerated_low_confidence(0.17) benign(0.094) TCGA-CV-7242-01 17 79564324 79564324 C A NPLOC4 Missense_Mutation p.D314Y 0.18 deleterious(0) probably_damaging(1) TCGA-CV-7242-01 17 79589283 79589283 G A NPLOC4 Nonsense_Mutation p.Q40* 0.10 TCGA-CV-7242-01 17 9676237 9676237 C A DHRS7C Missense_Mutation p.A193S 0.23 tolerated(0.14) probably_damaging(1) TCGA-CV-7242-01 18 21751402 21751402 G C OSBPL1A Missense_Mutation p.H754Q 0.29 deleterious(0) probably_damaging(0.974) TCGA-CV-7242-01 18 2937737 2937737 G A LPIN2 Missense_Mutation p.S374L 0.20 tolerated(0.19) benign(0.002) TCGA-CV-7242-01 18 31226289 31226289 G A ASXL3 Silent p.E109E 0.27 TCGA-CV-7242-01 18 48190452 48190452 G A MAPK4 Missense_Mutation p.A42T 0.24 tolerated(1) benign(0.002) TCGA-CV-7242-01 18 5890361 5890361 G T TMEM200C Missense_Mutation p.L568M 0.23 tolerated(0.11) benign(0.029) TCGA-CV-7242-01 18 67406203 67406203 T C DOK6 Missense_Mutation p.M201T 0.29 deleterious(0.02) possibly_damaging(0.531) TCGA-CV-7242-01 18 674298 674298 T C ENOSF1 3'UTR 0.30 TCGA-CV-7242-01 19 1058907 1058912 GGGGAT - ABCA7 In_Frame_Del p.G1790_D1791del 0.16 TCGA-CV-7242-01 19 11032327 11032327 C T CARM1 Missense_Mutation p.T574M 0.24 deleterious_low_confidence(0.01) benign(0.425) TCGA-CV-7242-01 19 11032328 11032328 G T CARM1 Silent p.T574T 0.23 TCGA-CV-7242-01 19 12384496 12384496 C A ZNF44 Missense_Mutation p.G240C 0.31 deleterious(0) possibly_damaging(0.827) TCGA-CV-7242-01 19 12991695 12991695 C G DNASE2 Splice_Site p.X90_splice 0.16 TCGA-CV-7242-01 19 15281139 15281139 C T NOTCH3 Intron 0.14 TCGA-CV-7242-01 19 15770178 15770178 G C CYP4F3 Missense_Mutation p.V516L 0.16 tolerated(0.56) benign(0.02) TCGA-CV-7242-01 19 16687968 16687968 C T MED26 Missense_Mutation p.A225T 0.23 tolerated(0.07) benign(0.009) TCGA-CV-7242-01 19 17104378 17104378 C A CPAMD8 Missense_Mutation p.D419Y 0.29 deleterious(0) probably_damaging(1) TCGA-CV-7242-01 19 18707506 18707506 C - CRLF1 Frame_Shift_Del p.G317Afs*109 0.13 TCGA-CV-7242-01 19 20002921 20002922 TG - ZNF253 Frame_Shift_Del p.C289Wfs*5 0.10 TCGA-CV-7242-01 19 2276353 2276353 C T C19orf35 Missense_Mutation p.A250T 0.29 tolerated(0.15) benign(0.088) TCGA-CV-7242-01 19 24010548 24010548 G T RPSAP58 Missense_Mutation p.W195C 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-CV-7242-01 19 31048100 31048100 A G ZNF536 3'UTR 0.18 TCGA-CV-7242-01 19 33353084 33353084 T C SLC7A9 Missense_Mutation p.Q215R 0.18 tolerated(0.11) benign(0.005) TCGA-CV-7242-01 19 35449469 35449469 G C ZNF792 Missense_Mutation p.F430L 0.30 tolerated(0.55) benign(0.208) TCGA-CV-7242-01 19 36111009 36111009 G T HAUS5 Missense_Mutation p.G501V 0.34 deleterious(0.01) probably_damaging(1) TCGA-CV-7242-01 19 36515346 36515346 G T CLIP3 Missense_Mutation p.S290R 0.31 tolerated(0.28) benign(0.253) TCGA-CV-7242-01 19 3762721 3762721 G T MRPL54 Missense_Mutation p.G8V 0.20 tolerated_low_confidence(0.12) benign(0.013) TCGA-CV-7242-01 19 37838218 37838218 G C HKR1 Missense_Mutation p.E73Q 0.32 deleterious(0.04) benign(0.175) TCGA-CV-7242-01 19 3784203 3784203 C A MATK Missense_Mutation p.S95I 0.27 deleterious(0.03) possibly_damaging(0.876) TCGA-CV-7242-01 19 39913657 39913657 C T PLEKHG2 Missense_Mutation p.R655C 0.26 tolerated_low_confidence(0.13) benign(0) TCGA-CV-7242-01 19 39913658 39913658 G T PLEKHG2 Missense_Mutation p.R655L 0.26 tolerated_low_confidence(0.34) benign(0.001) TCGA-CV-7242-01 19 41450706 41450706 G C AC092071.1 5'Flank 0.23 TCGA-CV-7242-01 19 43269794 43269794 G C PSG8 5'UTR 0.19 TCGA-CV-7242-01 19 43519501 43519501 A T PSG11 Missense_Mutation p.I244N 0.17 deleterious(0) possibly_damaging(0.813) TCGA-CV-7242-01 19 45852823 45852823 C A KLC3 Missense_Mutation p.P369H 0.29 deleterious(0.01) possibly_damaging(0.697) TCGA-CV-7242-01 19 50390975 50390975 G T TBC1D17 Missense_Mutation p.V515L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 19 51172432 51172432 G T SHANK1 Missense_Mutation p.P929T 0.31 benign(0.092) TCGA-CV-7242-01 19 51650065 51650065 C A SIGLEC7 Missense_Mutation p.A361D 0.21 deleterious(0.01) possibly_damaging(0.878) TCGA-CV-7242-01 19 5222178 5222178 T A PTPRS Missense_Mutation p.S1053C 0.26 deleterious(0) possibly_damaging(0.599) TCGA-CV-7242-01 19 54313274 54313274 C T NLRP12 Missense_Mutation p.E547K 0.33 tolerated(0.15) benign(0.081) TCGA-CV-7242-01 19 54313275 54313275 G C NLRP12 Silent p.T546T 0.32 TCGA-CV-7242-01 19 54515287 54515287 G T CACNG6 Silent p.P209P 0.20 TCGA-CV-7242-01 19 54646740 54646740 G T CNOT3 Splice_Site p.X9_splice 0.20 TCGA-CV-7242-01 19 56499284 56499284 T A NLRP8 3'UTR 0.21 TCGA-CV-7242-01 19 57328850 57328850 C G PEG3 Missense_Mutation p.K320N 0.29 deleterious(0) possibly_damaging(0.717) TCGA-CV-7242-01 19 5787365 5787365 C - DUS3L Frame_Shift_Del p.G407Afs*5 0.26 TCGA-CV-7242-01 19 7518437 7518437 A T ARHGEF18 Missense_Mutation p.E459V 0.25 deleterious(0.02) possibly_damaging(0.881) TCGA-CV-7242-01 1 100701061 100701061 C A DBT Missense_Mutation p.R61L 0.27 tolerated(0.69) benign(0.006) TCGA-CV-7242-01 1 111991351 111991351 G A WDR77 Missense_Mutation p.P64L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7242-01 1 12921146 12921146 C A PRAMEF2 Missense_Mutation p.L313I 0.19 deleterious(0) benign(0.335) TCGA-CV-7242-01 1 145039590 145039590 C G PDE4DIP Missense_Mutation p.R7T 0.05 deleterious_low_confidence(0) unknown(0) TCGA-CV-7242-01 1 151553494 151553494 G A TUFT1 Missense_Mutation p.R362Q 0.25 tolerated(0.13) benign(0.036) TCGA-CV-7242-01 1 157514694 157514694 A C FCRL5 Silent p.G162G 0.11 TCGA-CV-7242-01 1 166904662 166904662 A T ILDR2 Silent p.G252G 0.28 TCGA-CV-7242-01 1 166961962 166961962 G T MAEL Missense_Mutation p.S122I 0.50 deleterious(0) possibly_damaging(0.621) TCGA-CV-7242-01 1 167097477 167097477 C T DUSP27 Missense_Mutation p.P1037S 0.43 deleterious(0) probably_damaging(0.957) TCGA-CV-7242-01 1 175325503 175325503 T C TNR Missense_Mutation p.T1024A 0.12 tolerated(0.46) benign(0.047) TCGA-CV-7242-01 1 176640251 176640251 G A PAPPA2 Missense_Mutation p.G713S 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7242-01 1 180885313 180885313 C G KIAA1614 Missense_Mutation p.T25R 0.06 tolerated(0.06) benign(0.003) TCGA-CV-7242-01 1 196712681 196712681 G T CFH Missense_Mutation p.R1078M 0.20 tolerated(0.11) benign(0.244) TCGA-CV-7242-01 1 197396759 197396759 G A CRB1 Silent p.E768E 0.51 TCGA-CV-7242-01 1 203472812 203472812 C T OPTC Silent p.F321F 0.33 TCGA-CV-7242-01 1 214171294 214171294 C A PROX1 Silent p.T472T 0.46 TCGA-CV-7242-01 1 216591996 216591996 C T USH2A Missense_Mutation p.G171R 0.11 probably_damaging(0.985) TCGA-CV-7242-01 1 243362455 243362455 G C CEP170 Missense_Mutation p.P180A 0.45 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 1 248569884 248569884 G T OR2T1 Missense_Mutation p.G197C 0.49 deleterious(0.04) benign(0.16) TCGA-CV-7242-01 1 25573429 25573429 C A C1orf63 Missense_Mutation p.W9L 0.21 deleterious_low_confidence(0) unknown(0) TCGA-CV-7242-01 1 2939112 2939112 G A ACTRT2 Missense_Mutation p.D288N 0.22 deleterious(0.02) benign(0.443) TCGA-CV-7242-01 1 3686432 3686432 A T CCDC27 Missense_Mutation p.D610V 0.18 deleterious(0.01) possibly_damaging(0.886) TCGA-CV-7242-01 1 43803901 43803901 C A MPL Silent p.R71R 0.17 TCGA-CV-7242-01 1 43903291 43903291 C T SZT2 Missense_Mutation p.R2049W 0.23 deleterious(0) probably_damaging(0.96) TCGA-CV-7242-01 1 51735628 51735628 G C RNF11 Missense_Mutation p.E42Q 0.17 tolerated(0.12) benign(0.01) TCGA-CV-7242-01 1 55451924 55451924 C T TMEM61 Missense_Mutation p.P57L 0.24 deleterious(0) probably_damaging(0.96) TCGA-CV-7242-01 1 67263676 67263676 A G INSL5 3'UTR 0.39 TCGA-CV-7242-01 1 7737775 7737775 G T CAMTA1 Missense_Mutation p.D966Y 0.29 deleterious(0) probably_damaging(0.989) TCGA-CV-7242-01 1 89523674 89523674 C A GBP1 Splice_Site p.X292_splice 0.31 TCGA-CV-7242-01 20 1285985 1285985 C A SNPH Missense_Mutation p.L258M 0.32 deleterious(0.03) probably_damaging(0.991) TCGA-CV-7242-01 20 1960874 1960874 T C PDYN 3'UTR 0.25 TCGA-CV-7242-01 20 2312716 2312716 G A TGM3 Missense_Mutation p.A468T 0.09 tolerated(0.57) benign(0.3) TCGA-CV-7242-01 20 2321165 2321165 G C TGM3 Missense_Mutation p.D674H 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-CV-7242-01 20 23345471 23345471 G T GZF1 Missense_Mutation p.V151L 0.24 tolerated(0.31) benign(0.004) TCGA-CV-7242-01 20 24524045 24524045 C A SYNDIG1 Missense_Mutation p.D104E 0.29 tolerated(0.79) benign(0.002) TCGA-CV-7242-01 20 2640691 2640691 G A IDH3B Silent p.Y300Y 0.20 TCGA-CV-7242-01 20 3841990 3841990 C T MAVS Missense_Mutation p.R102C 0.25 tolerated(0.24) benign(0.006) TCGA-CV-7242-01 20 40118659 40118659 T C CHD6 Missense_Mutation p.K480R 0.30 tolerated(0.82) benign(0.157) TCGA-CV-7242-01 20 50140492 50140492 C G NFATC2 Missense_Mutation p.K96N 0.18 tolerated(0.32) benign(0) TCGA-CV-7242-01 20 55909825 55909825 T C SPO11 Missense_Mutation p.L177S 0.25 deleterious(0.02) possibly_damaging(0.835) TCGA-CV-7242-01 20 629443 629443 C A SRXN1 Missense_Mutation p.R110L 0.25 tolerated(0.34) benign(0.049) TCGA-CV-7242-01 20 8737765 8737765 C A PLCB1 Missense_Mutation p.H866N 0.42 tolerated(0.52) benign(0.004) TCGA-CV-7242-01 21 31768471 31768471 G A KRTAP13-1 Missense_Mutation p.A23T 0.39 tolerated(0.18) benign(0.005) TCGA-CV-7242-01 21 31863869 31863869 T C KRTAP19-3 3'UTR 0.29 TCGA-CV-7242-01 21 34927512 34927512 G A SON Missense_Mutation p.S1992N 0.29 unknown(0) TCGA-CV-7242-01 22 41265101 41265101 C T XPNPEP3 Missense_Mutation p.P55S 0.22 deleterious(0.05) probably_damaging(0.986) TCGA-CV-7242-01 22 41349628 41349628 A G RBX1 Missense_Mutation p.M50V 0.20 deleterious(0) benign(0.22) TCGA-CV-7242-01 22 45689060 45689060 A T UPK3A Splice_Site p.X191_splice 0.24 TCGA-CV-7242-01 2 113514482 113514482 C A CKAP2L Missense_Mutation p.D156Y 0.17 deleterious(0.02) benign(0.023) TCGA-CV-7242-01 2 128036885 128036885 A G ERCC3 Silent p.L532L 0.20 TCGA-CV-7242-01 2 128186637 128186637 T A PROC 3'UTR 0.38 TCGA-CV-7242-01 2 137814036 137814036 G T THSD7B Missense_Mutation p.Q62H 0.22 deleterious(0) benign(0.387) TCGA-CV-7242-01 2 137852609 137852609 A G THSD7B Missense_Mutation p.I373V 0.22 tolerated(0.65) possibly_damaging(0.557) TCGA-CV-7242-01 2 158178042 158178042 T C ERMN Missense_Mutation p.D212G 0.05 deleterious(0) probably_damaging(0.988) TCGA-CV-7242-01 2 158594062 158594062 T A ACVR1 Missense_Mutation p.K504I 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 2 160206241 160206241 G A BAZ2B Missense_Mutation p.P1614L 0.15 benign(0.05) TCGA-CV-7242-01 2 169721546 169721546 A T NOSTRIN 3'UTR 0.21 TCGA-CV-7242-01 2 179411788 179411788 A T TTN Silent p.A31488A 0.21 TCGA-CV-7242-01 2 179411994 179411994 C T TTN Missense_Mutation p.V31420M 0.25 TCGA-CV-7242-01 2 179458745 179458745 C T TTN Missense_Mutation p.V19459M 0.22 TCGA-CV-7242-01 2 179571433 179571433 C A TTN Missense_Mutation p.G9723V 0.24 TCGA-CV-7242-01 2 179581892 179581892 G T TTN Silent p.A8523A 0.30 TCGA-CV-7242-01 2 179595724 179595724 T A TTN Missense_Mutation p.S5890C 0.25 TCGA-CV-7242-01 2 1796146 1796146 T C MYT1L Missense_Mutation p.N1121D 0.24 deleterious(0.03) probably_damaging(0.939) TCGA-CV-7242-01 2 183723523 183723523 C - FRZB Frame_Shift_Del p.A173Qfs*34 0.18 TCGA-CV-7242-01 2 185803799 185803799 A G ZNF804A 3'UTR 0.21 TCGA-CV-7242-01 2 190670532 190670532 G T PMS1 Intron 0.27 TCGA-CV-7242-01 2 197650199 197650199 T C GTF3C3 Missense_Mutation p.Y336C 0.19 tolerated(0.06) benign(0.018) TCGA-CV-7242-01 2 20647664 20647664 C A RHOB Silent p.A146A 0.31 TCGA-CV-7242-01 2 206869167 206869167 A G INO80D Silent p.P1003P 0.21 TCGA-CV-7242-01 2 207620218 207620218 G A MDH1B Missense_Mutation p.P142L 0.29 tolerated(0.26) benign(0.013) TCGA-CV-7242-01 2 207834010 207834010 G T CPO Missense_Mutation p.Q325H 0.20 deleterious(0) probably_damaging(0.998) TCGA-CV-7242-01 2 21231924 21231924 C T APOB Missense_Mutation p.A2606T 0.29 probably_damaging(0.996) TCGA-CV-7242-01 2 220501488 220501488 C T SLC4A3 Silent p.A836A 0.24 TCGA-CV-7242-01 2 232390111 232390111 G C NMUR1 Missense_Mutation p.I308M 0.15 deleterious(0) possibly_damaging(0.882) TCGA-CV-7242-01 2 233246046 233246046 C T ALPP Silent p.G426G 0.22 TCGA-CV-7242-01 2 241831032 241831032 G T C2orf54 Silent p.P221P 0.26 TCGA-CV-7242-01 2 39505576 39505576 T C MAP4K3 Missense_Mutation p.N589S 0.11 tolerated(0.07) probably_damaging(0.996) TCGA-CV-7242-01 2 42580403 42580403 C A COX7A2L Silent p.V51V 0.21 TCGA-CV-7242-01 2 44104829 44104829 T A ABCG8 Splice_Site p.X628_splice 0.20 TCGA-CV-7242-01 2 49189901 49189901 C G FSHR Missense_Mutation p.V687L 0.22 tolerated(0.16) benign(0.098) TCGA-CV-7242-01 2 49381534 49381534 A G FSHR Missense_Mutation p.L8S 0.17 tolerated(0.08) benign(0) TCGA-CV-7242-01 2 50780107 50780107 T A NRXN1 Silent p.G499G 0.22 TCGA-CV-7242-01 2 50780123 50780123 C A NRXN1 Missense_Mutation p.R494L 0.19 deleterious(0.01) probably_damaging(0.955) TCGA-CV-7242-01 2 71795363 71795363 C A DYSF Missense_Mutation p.P920H 0.22 tolerated(0.62) benign(0.261) TCGA-CV-7242-01 2 72361997 72361997 G A CYP26B1 Missense_Mutation p.R252W 0.34 deleterious(0.01) possibly_damaging(0.773) TCGA-CV-7242-01 2 73777441 73777441 A C ALMS1 Missense_Mutation p.T3318P 0.21 probably_damaging(0.999) TCGA-CV-7242-01 2 79312665 79312665 G C REG1B Missense_Mutation p.P129R 0.22 deleterious(0) probably_damaging(0.951) TCGA-CV-7242-01 2 85554620 85554620 C T TGOLN2 Missense_Mutation p.D79N 0.25 tolerated(0.18) possibly_damaging(0.908) TCGA-CV-7242-01 2 89399604 89399604 C GA IGKV1-16 Frame_Shift_Ins p.S34Lfs*19 0.12 TCGA-CV-7242-01 2 90108995 90108995 C T IGKV6D-41 Missense_Mutation p.S87F 0.24 deleterious(0.01) possibly_damaging(0.562) TCGA-CV-7242-01 2 97361322 97361322 T A FER1L5 RNA 0.29 TCGA-CV-7242-01 3 109049365 109049365 G C DPPA4 Intron 0.20 TCGA-CV-7242-01 3 109049491 109049491 C A DPPA4 Nonsense_Mutation p.E187* 0.19 TCGA-CV-7242-01 3 121208845 121208845 T C POLQ Missense_Mutation p.Q978R 0.25 tolerated(0.16) benign(0.01) TCGA-CV-7242-01 3 125727708 125727708 G T SLC41A3 Nonsense_Mutation p.S374* 0.18 TCGA-CV-7242-01 3 130287207 130287207 C A COL6A6 Silent p.P720P 0.25 TCGA-CV-7242-01 3 142184024 142184024 C T ATR Missense_Mutation p.G2319E 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7242-01 3 14769945 14769945 G T C3orf20 Splice_Site p.X564_splice 0.34 TCGA-CV-7242-01 3 168269715 168269715 G C MIR551B RNA 0.14 TCGA-CV-7242-01 3 172241175 172241175 G A TNFSF10 5'UTR 0.17 TCGA-CV-7242-01 3 173997383 173997383 A G NLGN1 Missense_Mutation p.N531S 0.14 tolerated(0.19) possibly_damaging(0.904) TCGA-CV-7242-01 3 194365325 194365325 C T LSG1 Missense_Mutation p.V592I 0.17 tolerated(0.15) possibly_damaging(0.459) TCGA-CV-7242-01 3 96533514 96533514 A T EPHA6 Missense_Mutation p.Q16L 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-7242-01 3 97439201 97439201 T A EPHA6 Missense_Mutation p.W961R 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 3 98299487 98299487 C T CPOX 3'UTR 0.16 TCGA-CV-7242-01 4 100349102 100349102 G T ADH7 Missense_Mutation p.T151K 0.22 deleterious(0.02) benign(0.101) TCGA-CV-7242-01 4 113351810 113351811 - G ALPK1 Frame_Shift_Ins p.E371Gfs*13 0.24 TCGA-CV-7242-01 4 121957963 121957963 T A NDNF Missense_Mutation p.Q388L 0.28 deleterious(0.03) possibly_damaging(0.873) TCGA-CV-7242-01 4 158281238 158281238 G T GRIA2 Missense_Mutation p.G745V 0.20 deleterious(0) probably_damaging(1) TCGA-CV-7242-01 4 162380450 162380450 G C FSTL5 Missense_Mutation p.P544A 0.14 deleterious(0) probably_damaging(0.98) TCGA-CV-7242-01 4 164246423 164246423 A G NPY1R 3'UTR 0.23 TCGA-CV-7242-01 4 164393884 164393884 C A TKTL2 Missense_Mutation p.A335S 0.23 tolerated(0.22) benign(0.031) TCGA-CV-7242-01 4 17805350 17805350 C A DCAF16 Missense_Mutation p.A139S 0.26 deleterious_low_confidence(0.04) benign(0.08) TCGA-CV-7242-01 4 187120147 187120147 C T CYP4V2 Silent p.P237P 0.20 TCGA-CV-7242-01 4 187629394 187629394 T A FAT1 Missense_Mutation p.M530L 0.27 possibly_damaging(0.795) TCGA-CV-7242-01 4 1936943 1936943 A T WHSC1 Missense_Mutation p.D543V 0.27 tolerated(0.31) benign(0.13) TCGA-CV-7242-01 4 57190366 57190366 G A KIAA1211 Missense_Mutation p.A1159T 0.23 tolerated(0.07) possibly_damaging(0.682) TCGA-CV-7242-01 4 73012694 73012694 G C NPFFR2 Splice_Site p.X245_splice 0.23 TCGA-CV-7242-01 4 77303790 77303790 C A CCDC158 Missense_Mutation p.S296I 0.22 deleterious(0) probably_damaging(0.992) TCGA-CV-7242-01 4 89414186 89414186 G A HERC5 Silent p.G719G 0.19 TCGA-CV-7242-01 4 90856410 90856410 T A MMRN1 Missense_Mutation p.S527T 0.23 tolerated(0.13) benign(0.099) TCGA-CV-7242-01 4 96140416 96140416 C G UNC5C Missense_Mutation p.R450T 0.27 tolerated(0.18) possibly_damaging(0.71) TCGA-CV-7242-01 5 110819999 110819999 G A CAMK4 Silent p.K419K 0.31 TCGA-CV-7242-01 5 11082934 11082934 C G CTNND2 Missense_Mutation p.V888L 0.58 tolerated(0.07) probably_damaging(0.989) TCGA-CV-7242-01 5 140168241 140168241 C G PCDHA1 Missense_Mutation p.P789R 0.21 tolerated_low_confidence(0.54) benign(0.002) TCGA-CV-7242-01 5 140207985 140207985 C T PCDHA6 Silent p.S103S 0.26 TCGA-CV-7242-01 5 140346945 140346945 G A PCDHAC2 Silent p.K198K 0.24 TCGA-CV-7242-01 5 140719217 140719217 C T PCDHGA2 Missense_Mutation p.R227C 0.23 tolerated_low_confidence(0.07) benign(0.318) TCGA-CV-7242-01 5 148407522 148407522 C A SH3TC2 Silent p.L591L 0.35 TCGA-CV-7242-01 5 17354245 17354245 C G CTD-2139B15.2 Intron 0.48 TCGA-CV-7242-01 5 176710803 176710803 G A NSD1 Missense_Mutation p.A2009T 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7242-01 5 44310549 44310549 T C FGF10 Missense_Mutation p.K137E 0.18 tolerated(0.22) benign(0.122) TCGA-CV-7242-01 5 65118660 65118660 G T NLN Missense_Mutation p.G678C 0.40 deleterious(0) probably_damaging(0.998) TCGA-CV-7242-01 6 11565999 11565999 G - TMEM170B Frame_Shift_Del p.G67Efs*17 0.17 TCGA-CV-7242-01 6 129802530 129802530 G A LAMA2 Silent p.L2565L 0.17 TCGA-CV-7242-01 6 133013716 133013716 G T VNN1 Silent p.G278G 0.32 TCGA-CV-7242-01 6 135639745 135639745 T G AHI1 Missense_Mutation p.Q1113P 0.25 deleterious(0.03) possibly_damaging(0.47) TCGA-CV-7242-01 6 136590672 136590672 G C BCLAF1 Missense_Mutation p.R708G 0.14 deleterious(0) benign(0.433) TCGA-CV-7242-01 6 146262922 146262922 C A SHPRH Missense_Mutation p.R776L 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7242-01 6 146263002 146263002 T G SHPRH Missense_Mutation p.Q749H 0.09 deleterious(0.01) probably_damaging(0.979) TCGA-CV-7242-01 6 146720036 146720036 C A GRM1 Missense_Mutation p.P621T 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7242-01 6 151673477 151673477 T A AKAP12 Missense_Mutation p.D1317E 0.22 tolerated(0.64) benign(0.003) TCGA-CV-7242-01 6 27879226 27879226 G A OR2B2 Missense_Mutation p.T291I 0.18 deleterious(0) probably_damaging(0.963) TCGA-CV-7242-01 6 28334066 28334066 A G ZKSCAN3 3'UTR 0.11 TCGA-CV-7242-01 6 28543800 28543800 T A SCAND3 Nonsense_Mutation p.R228* 0.14 TCGA-CV-7242-01 6 3227795 3227795 C T TUBB2B 5'UTR 0.27 TCGA-CV-7242-01 6 33041402 33041402 A T HLA-DPA1 5'UTR 0.33 TCGA-CV-7242-01 6 36294357 36294357 C T C6orf222 Nonsense_Mutation p.W322* 0.14 TCGA-CV-7242-01 6 38854730 38854730 C A DNAH8 Missense_Mutation p.T2591N 0.33 benign(0.02) TCGA-CV-7242-01 6 43581937 43581937 G T POLH Missense_Mutation p.M595I 0.16 tolerated(0.19) benign(0.001) TCGA-CV-7242-01 6 64422632 64422632 A T PHF3 Missense_Mutation p.L1716F 0.25 deleterious_low_confidence(0) benign(0.004) TCGA-CV-7242-01 6 70861308 70861308 G C COL19A1 Missense_Mutation p.G686A 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-CV-7242-01 6 84375158 84375158 C A SNAP91 Missense_Mutation p.E91D 0.28 deleterious(0) unknown(0) TCGA-CV-7242-01 6 87725251 87725251 A G HTR1E Missense_Mutation p.T67A 0.26 deleterious(0.02) probably_damaging(0.923) TCGA-CV-7242-01 6 90572117 90572117 C G CASP8AP2 RNA 0.29 TCGA-CV-7242-01 6 96652001 96652001 G C FUT9 Missense_Mutation p.V324L 0.35 tolerated(0.08) possibly_damaging(0.899) TCGA-CV-7242-01 7 103270558 103270558 G C RELN Missense_Mutation p.P844R 0.13 deleterious(0.02) possibly_damaging(0.907) TCGA-CV-7242-01 7 121756934 121756934 T A AASS Silent p.G255G 0.29 TCGA-CV-7242-01 7 122221318 122221318 G T CADPS2 Missense_Mutation p.T417N 0.13 deleterious(0) probably_damaging(0.971) TCGA-CV-7242-01 7 123143292 123143292 C G IQUB Missense_Mutation p.D220H 0.21 tolerated(0.29) benign(0.004) TCGA-CV-7242-01 7 142045805 142045805 C A TRBV4-2 Silent p.A111A 0.12 TCGA-CV-7242-01 7 142378976 142378976 G A MTRNR2L6 3'Flank 0.12 TCGA-CV-7242-01 7 146829568 146829568 C T CNTNAP2 Nonsense_Mutation p.Q439* 0.11 TCGA-CV-7242-01 7 148787807 148787807 C G ZNF786 5'Flank 0.44 TCGA-CV-7242-01 7 150768237 150768237 G T SLC4A2 Missense_Mutation p.V610L 0.24 tolerated(0.19) benign(0.215) TCGA-CV-7242-01 7 151127188 151127188 C G CRYGN Missense_Mutation p.E165D 0.21 tolerated_low_confidence(0.05) benign(0.011) TCGA-CV-7242-01 7 1515969 1515969 G A INTS1 Silent p.I1758I 0.33 TCGA-CV-7242-01 7 151797963 151797963 C T GALNT11 Missense_Mutation p.R126C 0.19 deleterious(0) possibly_damaging(0.893) TCGA-CV-7242-01 7 151845956 151845956 C T KMT2C Nonsense_Mutation p.W4352* 0.21 TCGA-CV-7242-01 7 37953821 37953821 T C SFRP4 Missense_Mutation p.S196G 0.33 tolerated(0.05) probably_damaging(0.926) TCGA-CV-7242-01 7 64498812 64498812 A T CCT6P3 RNA 0.18 TCGA-CV-7242-01 7 87053332 87053332 G T ABCB4 Missense_Mutation p.L701M 0.20 tolerated(0.38) benign(0.14) TCGA-CV-7242-01 7 88966279 88966279 G A ZNF804B Missense_Mutation p.C1328Y 0.21 tolerated(0.13) benign(0.02) TCGA-CV-7242-01 7 90042423 90042423 A T CLDN12 Missense_Mutation p.T145S 0.08 tolerated(0.06) benign(0.014) TCGA-CV-7242-01 7 91724387 91724387 T G AKAP9 Nonsense_Mutation p.L3210* 0.08 TCGA-CV-7242-01 7 94259126 94259126 G T SGCE Missense_Mutation p.S46Y 0.11 deleterious(0) possibly_damaging(0.674) TCGA-CV-7242-01 7 99358513 99358513 G T CYP3A4 Missense_Mutation p.L449I 0.29 tolerated(0.13) benign(0.048) TCGA-CV-7242-01 8 113353910 113353910 G T CSMD3 Missense_Mutation p.H2150N 0.59 deleterious(0.01) probably_damaging(0.93) TCGA-CV-7242-01 8 125555397 125555397 G A NDUFB9 Missense_Mutation p.M57I 0.55 tolerated(0.14) benign(0.058) TCGA-CV-7242-01 8 142231850 142231850 A G SLC45A4 Missense_Mutation p.Y35H 0.54 deleterious(0) benign(0.105) TCGA-CV-7242-01 8 144459586 144459586 G T RHPN1 Silent p.L114L 0.50 TCGA-CV-7242-01 8 20107319 20107319 G A LZTS1 Missense_Mutation p.R569C 0.14 tolerated(0.16) possibly_damaging(0.77) TCGA-CV-7242-01 8 2823313 2823313 G T CSMD1 Missense_Mutation p.S3088R 0.40 benign(0.421) TCGA-CV-7242-01 8 30703870 30703870 T C TEX15 Missense_Mutation p.I888M 0.21 tolerated(0.31) benign(0.392) TCGA-CV-7242-01 8 38699961 38699961 A C TACC1 Missense_Mutation p.K706T 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-7242-01 8 86158008 86158008 C T CA13 5'UTR 0.32 TCGA-CV-7242-01 8 95500951 95500951 G A KIAA1429 Missense_Mutation p.R1808C 0.26 deleterious(0) possibly_damaging(0.835) TCGA-CV-7242-01 9 112899643 112899643 G C PALM2-AKAP2 Missense_Mutation p.V607L 0.52 tolerated(0.17) benign(0.002) TCGA-CV-7242-01 9 121929752 121929752 C A BRINP1 Missense_Mutation p.E632D 0.48 tolerated(0.4) benign(0) TCGA-CV-7242-01 9 79229335 79229335 A G PRUNE2 3'UTR 0.44 TCGA-CV-7242-01 9 79321004 79321004 C A PRUNE2 Missense_Mutation p.Q2062H 0.24 tolerated(0.1) benign(0.086) TCGA-CV-7242-01 9 84564687 84564687 T A RP11-383M4.6 Intron 0.55 TCGA-CV-7242-01 X 117817178 117817178 C T DOCK11 Nonsense_Mutation p.Q2034* 0.39 TCGA-CV-7242-01 X 119677600 119677600 T G CUL4B Missense_Mutation p.Y431S 0.37 deleterious(0) probably_damaging(0.995) TCGA-CV-7242-01 X 12734346 12734346 A G FRMPD4 Missense_Mutation p.K590E 0.30 tolerated_low_confidence(0.13) benign(0.005) TCGA-CV-7242-01 X 12939289 12939289 T C TLR8 Silent p.F710F 0.28 TCGA-CV-7242-01 X 131212467 131212467 A G FRMD7 Silent p.T526T 0.34 TCGA-CV-7242-01 X 131212468 131212468 G T FRMD7 Missense_Mutation p.T526N 0.35 tolerated(0.08) benign(0.097) TCGA-CV-7242-01 X 140995218 140995218 C A MAGEC1 Silent p.L676L 0.34 TCGA-CV-7242-01 X 140995219 140995219 C A MAGEC1 Missense_Mutation p.Q677K 0.35 deleterious_low_confidence(0.01) benign(0.042) TCGA-CV-7242-01 X 153533683 153533683 T A TKTL1 Silent p.S54S 0.31 TCGA-CV-7242-01 X 26212351 26212351 G T MAGEB6 Missense_Mutation p.G130C 0.40 deleterious(0.02) probably_damaging(0.989) TCGA-CV-7242-01 X 27766814 27766814 C G DCAF8L2 Missense_Mutation p.A601G 0.31 tolerated(0.73) benign(0.007) TCGA-CV-7242-01 X 3229299 3229299 C T MXRA5 Silent p.G2315G 0.34 TCGA-CV-7242-01 X 34960984 34960984 C A FAM47B Silent p.S12S 0.32 TCGA-CV-7242-01 X 50119165 50119165 C A DGKK Splice_Site 0.38 TCGA-CV-7242-01 X 55290291 55290291 C G PAGE3 Missense_Mutation p.D16H 0.28 deleterious(0.04) probably_damaging(0.988) TCGA-CV-7242-01 X 73068472 73068472 G T XIST RNA 0.35 TCGA-CV-7242-01 X 78616913 78616913 G A ITM2A Missense_Mutation p.R206C 0.35 deleterious(0.01) benign(0.005) TCGA-CV-7242-01 X 89177112 89177112 G T TGIF2LX Nonsense_Mutation p.E10* 0.36 TCGA-CV-7243-01 10 121557140 121557140 C T INPP5F Missense_Mutation p.R346W 0.12 deleterious(0.02) benign(0.094) TCGA-CV-7243-01 10 131565233 131565233 C T MGMT Missense_Mutation p.S230L 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-CV-7243-01 11 120348886 120348886 C G ARHGEF12 Missense_Mutation p.S1185C 0.14 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-CV-7243-01 11 55904668 55904671 TGAT - OR8J3 Frame_Shift_Del p.N175Ifs*10 0.12 TCGA-CV-7243-01 11 56431686 56431686 T G OR5AR1 Missense_Mutation p.N175K 0.13 deleterious(0.02) probably_damaging(0.912) TCGA-CV-7243-01 11 57003294 57003294 C G APLNR 3'UTR 0.08 TCGA-CV-7243-01 11 57798843 57798843 T G OR6Q1 Missense_Mutation p.V140G 0.14 deleterious(0) probably_damaging(0.991) TCGA-CV-7243-01 12 104069765 104069765 G T STAB2 Missense_Mutation p.C871F 0.13 deleterious(0) probably_damaging(0.935) TCGA-CV-7243-01 12 105589401 105589401 T C APPL2 Missense_Mutation p.I359V 0.20 tolerated(0.94) benign(0.038) TCGA-CV-7243-01 12 110236702 110236702 G A TRPV4 Missense_Mutation p.S290L 0.17 deleterious(0) probably_damaging(0.997) TCGA-CV-7243-01 12 120582810 120582810 G A GCN1L1 Missense_Mutation p.S1691L 0.10 benign(0.306) TCGA-CV-7243-01 12 123001845 123001845 C A RSRC2 Missense_Mutation p.R177S 0.15 tolerated_low_confidence(0.23) unknown(0) TCGA-CV-7243-01 12 72335511 72335511 C G TPH2 Missense_Mutation p.Q85E 0.14 tolerated(0.74) benign(0.054) TCGA-CV-7243-01 12 93205154 93205158 CTTGT - EEA1 Frame_Shift_Del p.D699Afs*12 0.19 TCGA-CV-7243-01 13 100206567 100206570 CACC - TM9SF2 Frame_Shift_Del p.H500Qfs*43 0.18 TCGA-CV-7243-01 14 23746122 23746122 G A HOMEZ Silent p.A105A 0.13 TCGA-CV-7243-01 14 57747048 57747048 G A AP5M1 Missense_Mutation p.D286N 0.30 tolerated(0.07) benign(0.16) TCGA-CV-7243-01 14 58917303 58917303 T C KIAA0586 Missense_Mutation p.L376S 0.22 tolerated(0.58) benign(0.01) TCGA-CV-7243-01 14 95921755 95921755 C T SYNE3 Missense_Mutation p.G366R 0.24 tolerated(0.38) benign(0.001) TCGA-CV-7243-01 15 43820775 43820775 C T MAP1A Silent p.N2368N 0.18 TCGA-CV-7243-01 16 2158447 2158447 G C PKD1 Missense_Mutation p.L2241V 0.17 probably_damaging(0.998) TCGA-CV-7243-01 16 58074525 58074525 C T MMP15 Missense_Mutation p.A278V 0.30 deleterious(0) probably_damaging(0.977) TCGA-CV-7243-01 16 70597896 70597896 G A SF3B3 Silent p.T802T 0.13 TCGA-CV-7243-01 16 70698642 70698642 C T MTSS1L Missense_Mutation p.A444T 0.26 tolerated(0.15) benign(0.022) TCGA-CV-7243-01 16 84270386 84270386 C T KCNG4 Missense_Mutation p.V236I 0.46 tolerated(0.57) benign(0.017) TCGA-CV-7243-01 17 35981216 35981216 T C DDX52 Missense_Mutation p.N486S 0.41 deleterious(0.02) probably_damaging(0.922) TCGA-CV-7243-01 17 40847683 40847683 C T CNTNAP1 Missense_Mutation p.P1046L 0.20 tolerated(0.09) probably_damaging(0.913) TCGA-CV-7243-01 17 57189580 57189580 T C SKA2 3'UTR 0.28 TCGA-CV-7243-01 17 57287434 57287434 C T SMG8 Nonsense_Mutation p.R8* 0.39 TCGA-CV-7243-01 17 73571013 73571013 C T LLGL2 3'UTR 0.19 TCGA-CV-7243-01 17 7578446 7578466 TGGCCATGGCGCGGACGCGGG - TP53 In_Frame_Del p.T155_A161del 0.38 TCGA-CV-7243-01 18 43467768 43467768 C T EPG5 Missense_Mutation p.R1686H 0.16 deleterious(0.03) probably_damaging(0.984) TCGA-CV-7243-01 18 48500811 48500811 G A ELAC1 Missense_Mutation p.A13T 0.15 deleterious(0.01) probably_damaging(0.964) TCGA-CV-7243-01 18 8379226 8379226 G A PTPRM Missense_Mutation p.R1225Q 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7243-01 19 13395974 13395974 C T CACNA1A Silent p.E1200E 0.43 TCGA-CV-7243-01 19 18729231 18729231 T C TMEM59L Missense_Mutation p.S277P 0.10 deleterious(0) probably_damaging(0.981) TCGA-CV-7243-01 19 2234193 2234193 G A PLEKHJ1 Silent p.S92S 0.17 TCGA-CV-7243-01 19 36605825 36605825 G A POLR2I 5'UTR 0.08 TCGA-CV-7243-01 19 38980889 38980889 C T RYR1 Silent p.R1996R 0.30 TCGA-CV-7243-01 19 43258661 43258661 G A PSG8 Missense_Mutation p.A356V 0.17 tolerated(0.08) benign(0.131) TCGA-CV-7243-01 19 48183863 48183863 C T GLTSCR1 Missense_Mutation p.A479V 0.31 unknown(0) TCGA-CV-7243-01 19 49458947 49458947 C T BAX Silent p.F30F 0.12 TCGA-CV-7243-01 19 49962338 49962338 G A ALDH16A1 Silent p.L105L 0.13 TCGA-CV-7243-01 19 52869877 52869877 A T ZNF610 Missense_Mutation p.T416S 0.15 tolerated(0.24) benign(0.038) TCGA-CV-7243-01 19 54416119 54416119 C T CACNG7 Silent p.L12L 0.14 TCGA-CV-7243-01 19 56300195 56300195 C G NLRP11 Missense_Mutation p.D945H 0.17 deleterious(0.03) possibly_damaging(0.525) TCGA-CV-7243-01 19 58639337 58639337 G A ZNF329 Missense_Mutation p.R512W 0.36 deleterious(0) possibly_damaging(0.606) TCGA-CV-7243-01 19 9088852 9088852 G T MUC16 Missense_Mutation p.S988Y 0.19 unknown(0) TCGA-CV-7243-01 1 12428620 12428620 C T VPS13D Missense_Mutation p.P3516S 0.32 probably_damaging(0.996) TCGA-CV-7243-01 1 169336959 169336959 T A NME7 5'UTR 0.24 TCGA-CV-7243-01 1 176659381 176659381 G T PAPPA2 Missense_Mutation p.S749I 0.11 deleterious(0) probably_damaging(0.997) TCGA-CV-7243-01 1 43317557 43317557 T C ZNF691 3'UTR 0.22 TCGA-CV-7243-01 20 1551696 1551696 C T SIRPB1 Missense_Mutation p.R280Q 0.35 tolerated(1) benign(0.004) TCGA-CV-7243-01 20 21687285 21687285 G A PAX1 Missense_Mutation p.G166R 0.16 deleterious(0) probably_damaging(1) TCGA-CV-7243-01 20 34827959 34827959 T G AAR2 Missense_Mutation p.F57V 0.08 deleterious(0) probably_damaging(0.954) TCGA-CV-7243-01 20 40192707 40192707 G C CHD6 Intron 0.19 TCGA-CV-7243-01 21 22804480 22804480 G A NCAM2 Silent p.T511T 0.09 TCGA-CV-7243-01 22 26849348 26849348 C T HPS4 Missense_Mutation p.A660T 0.12 deleterious(0) probably_damaging(0.984) TCGA-CV-7243-01 2 128238512 128238512 C T IWS1 3'UTR 0.33 TCGA-CV-7243-01 2 220432935 220432935 C T OBSL1 Missense_Mutation p.R375H 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-CV-7243-01 2 25383852 25383852 G A POMC 3'UTR 0.18 TCGA-CV-7243-01 2 27830785 27830785 G A ZNF512 Missense_Mutation p.R337Q 0.20 deleterious(0) benign(0.12) TCGA-CV-7243-01 2 55571557 55571557 C T CCDC88A Missense_Mutation p.E379K 0.12 deleterious(0.03) benign(0.253) TCGA-CV-7243-01 2 5833121 5833121 C T SOX11 Silent p.L90L 0.24 TCGA-CV-7243-01 3 14499524 14499524 C T SLC6A6 Silent p.L222L 0.19 TCGA-CV-7243-01 3 53883814 53883814 G A IL17RB Missense_Mutation p.R73Q 0.38 deleterious(0.03) possibly_damaging(0.866) TCGA-CV-7243-01 3 97887689 97887689 T C OR5H15 Missense_Mutation p.I49T 0.34 deleterious(0) probably_damaging(0.918) TCGA-CV-7243-01 4 121958733 121958733 A G NDNF Silent p.N131N 0.19 TCGA-CV-7243-01 4 134072411 134072411 G A PCDH10 Silent p.A372A 0.12 TCGA-CV-7243-01 4 139965866 139965866 C T CCRN4L Silent p.L178L 0.22 TCGA-CV-7243-01 4 149356634 149356634 A T NR3C2 Missense_Mutation p.F460Y 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-CV-7243-01 4 189012783 189012783 C A TRIML2 Missense_Mutation p.W303L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7243-01 4 41265298 41265298 C T UCHL1 Silent p.L172L 0.11 TCGA-CV-7243-01 5 86674234 86674234 G T RASA1 Missense_Mutation p.R789L 0.37 deleterious(0) probably_damaging(0.968) TCGA-CV-7243-01 6 143092672 143092672 C T HIVEP2 Silent p.T1068T 0.20 TCGA-CV-7243-01 6 144769778 144769778 C T UTRN Nonsense_Mutation p.Q649* 0.11 TCGA-CV-7243-01 6 27114379 27114379 C T HIST1H2BK Missense_Mutation p.V67I 0.07 tolerated_low_confidence(0.09) benign(0.075) TCGA-CV-7243-01 7 102553460 102553460 G A LRRC17 5'UTR 0.22 TCGA-CV-7243-01 7 154681011 154681011 G A DPP6 Silent p.A778A 0.22 TCGA-CV-7243-01 7 75634686 75634686 C T STYXL1 Missense_Mutation p.V164M 0.25 tolerated(0.24) benign(0.004) TCGA-CV-7243-01 7 82584839 82584839 G T PCLO Missense_Mutation p.D1810E 0.18 unknown(0) TCGA-CV-7243-01 7 92099180 92099180 G A ERVW-1 Silent p.L172L 0.21 TCGA-CV-7243-01 8 42175203 42175203 A T IKBKB Missense_Mutation p.D385V 0.20 tolerated(0.5) benign(0.215) TCGA-CV-7243-01 8 8999166 8999166 C T PPP1R3B 5'UTR 0.10 TCGA-CV-7243-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.50 TCGA-CV-7243-01 X 114844557 114844557 C T PLS3 Intron 0.30 TCGA-CV-7243-01 X 135487937 135487937 G A GPR112 Missense_Mutation p.C2914Y 0.26 deleterious(0) probably_damaging(0.916) TCGA-CV-7243-01 X 153524304 153524305 - GC TKTL1 Frame_Shift_Ins p.I33Efs*34 0.16 TCGA-CV-7245-01 10 102749398 102749398 C T C10orf2 Intron 0.20 TCGA-CV-7245-01 10 102749399 102749399 A T C10orf2 Splice_Site p.X415_splice 0.21 TCGA-CV-7245-01 10 102763890 102763890 C A LZTS2 Missense_Mutation p.D345E 0.20 tolerated(0.69) benign(0.014) TCGA-CV-7245-01 10 105762811 105762811 G T SLK Missense_Mutation p.E625D 0.29 tolerated(0.43) benign(0.002) TCGA-CV-7245-01 10 116930892 116930892 C G ATRNL1 Missense_Mutation p.T397R 0.51 tolerated(0.58) benign(0.001) TCGA-CV-7245-01 10 123596230 123596230 T C ATE1 Intron 0.47 TCGA-CV-7245-01 10 127738229 127738229 G C ADAM12 Missense_Mutation p.P543R 0.46 deleterious(0) probably_damaging(0.995) TCGA-CV-7245-01 10 131639253 131639253 G T EBF3 Nonsense_Mutation p.Y463* 0.32 TCGA-CV-7245-01 10 135350720 135350720 G T CYP2E1 Missense_Mutation p.R374L 0.16 tolerated(0.05) benign(0.201) TCGA-CV-7245-01 10 37414825 37414825 G A ANKRD30A 5'UTR 0.30 TCGA-CV-7245-01 10 37508355 37508355 G T ANKRD30A Missense_Mutation p.V1183L 0.25 tolerated(0.1) benign(0.417) TCGA-CV-7245-01 10 43089499 43089499 T C ZNF33B Missense_Mutation p.H300R 0.28 tolerated(0.66) benign(0.001) TCGA-CV-7245-01 10 44871472 44871472 C G CXCL12 3'Flank 0.13 TCGA-CV-7245-01 10 46121668 46121668 C A ZFAND4 Missense_Mutation p.G535W 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 10 47087815 47087815 C G NPY4R Silent p.A344A 0.16 TCGA-CV-7245-01 10 55568470 55568470 A T PCDH15 Silent p.G714G 0.23 TCGA-CV-7245-01 10 61830610 61830610 T C ANK3 Silent p.Q3343Q 0.32 TCGA-CV-7245-01 10 63851213 63851213 G T ARID5B Missense_Mutation p.G664V 0.18 tolerated(0.3) probably_damaging(0.997) TCGA-CV-7245-01 10 64960389 64960389 A C JMJD1C Missense_Mutation p.L1708R 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 10 68687888 68687888 G T LRRTM3 Missense_Mutation p.G405V 0.28 tolerated(0.35) benign(0) TCGA-CV-7245-01 10 69571401 69571401 G A DNAJC12 Nonsense_Mutation p.Q60* 0.25 TCGA-CV-7245-01 10 7409710 7409710 C T SFMBT2 Missense_Mutation p.E113K 0.26 deleterious(0.02) benign(0.392) TCGA-CV-7245-01 10 7409747 7409747 G C SFMBT2 Missense_Mutation p.C100W 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 10 81050778 81050778 G C ZMIZ1 Silent p.A201A 0.10 TCGA-CV-7245-01 10 81928966 81928966 G C ANXA11 Missense_Mutation p.P107R 0.44 deleterious(0) unknown(0) TCGA-CV-7245-01 10 84498357 84498357 C A NRG3 Silent p.V326V 0.23 TCGA-CV-7245-01 10 85992290 85992290 C T LRIT1 Missense_Mutation p.R422Q 0.23 tolerated(0.86) benign(0) TCGA-CV-7245-01 10 91497825 91497825 A C KIF20B Missense_Mutation p.H1036P 0.29 deleterious(0.01) probably_damaging(0.931) TCGA-CV-7245-01 10 98803255 98803255 G T SLIT1 Missense_Mutation p.N623K 0.37 deleterious(0) probably_damaging(0.998) TCGA-CV-7245-01 11 101834402 101834402 G C KIAA1377 Missense_Mutation p.C879S 0.56 tolerated(0.44) benign(0.313) TCGA-CV-7245-01 11 104819393 104819393 C A CASP4 Silent p.G264G 0.27 TCGA-CV-7245-01 11 105774688 105774688 T C GRIA4 Missense_Mutation p.M345T 0.19 tolerated(0.05) benign(0.073) TCGA-CV-7245-01 11 105950303 105950303 C G AASDHPPT Nonsense_Mutation p.S98* 0.26 TCGA-CV-7245-01 11 110485323 110485323 G C ARHGAP20 Missense_Mutation p.L198V 0.21 tolerated(0.06) possibly_damaging(0.9) TCGA-CV-7245-01 11 11373684 11373684 A C CSNK2A3 Missense_Mutation p.V328G 0.10 deleterious(0.04) benign(0.002) TCGA-CV-7245-01 11 118772310 118772310 C A BCL9L Silent p.A714A 0.26 TCGA-CV-7245-01 11 118944567 118944567 C G VPS11 Missense_Mutation p.L381V 0.21 deleterious(0.02) possibly_damaging(0.763) TCGA-CV-7245-01 11 126283417 126283417 G C ST3GAL4 Silent p.L263L 0.33 TCGA-CV-7245-01 11 129758530 129758530 C A NFRKB Missense_Mutation p.R112L 0.30 tolerated(0.07) unknown(0) TCGA-CV-7245-01 11 19077157 19077157 C A MRGPRX2 Missense_Mutation p.V265F 0.40 tolerated(0.17) benign(0.014) TCGA-CV-7245-01 11 236959 236959 C T PSMD13 5'Flank 0.43 TCGA-CV-7245-01 11 25004816 25004816 C A LUZP2 Missense_Mutation p.P248T 0.26 deleterious(0.03) possibly_damaging(0.628) TCGA-CV-7245-01 11 31823216 31823216 C A PAX6 Missense_Mutation p.V98L 0.26 deleterious(0.01) possibly_damaging(0.653) TCGA-CV-7245-01 11 3681167 3681167 C T ART1 Missense_Mutation p.R140C 0.26 tolerated(0.06) benign(0.168) TCGA-CV-7245-01 11 45892072 45892072 A T CRY2 Missense_Mutation p.Y534F 0.21 deleterious(0.05) possibly_damaging(0.616) TCGA-CV-7245-01 11 48168496 48168496 A G PTPRJ Missense_Mutation p.I994V 0.46 tolerated(0.13) benign(0.033) TCGA-CV-7245-01 11 50003578 50003578 C T OR4C12 Missense_Mutation p.A154T 0.21 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CV-7245-01 11 51515337 51515337 C A OR4C46 Missense_Mutation p.P19Q 0.17 deleterious_low_confidence(0.03) benign(0.182) TCGA-CV-7245-01 11 5172865 5172865 A G OR52A1 Silent p.I245I 0.23 TCGA-CV-7245-01 11 5364185 5364185 G T OR51B5 Silent p.T190T 0.40 TCGA-CV-7245-01 11 55035843 55035843 A T TRIM48 Missense_Mutation p.L191F 0.20 tolerated(0.18) benign(0.187) TCGA-CV-7245-01 11 55703379 55703379 A G OR5I1 Silent p.F166F 0.49 TCGA-CV-7245-01 11 55703773 55703773 G A OR5I1 Missense_Mutation p.T35I 0.19 tolerated(0.31) benign(0.001) TCGA-CV-7245-01 11 56020200 56020200 C T OR5T3 Silent p.I175I 0.45 TCGA-CV-7245-01 11 56127929 56127929 T C OR8J1 Silent p.I69I 0.19 TCGA-CV-7245-01 11 56309852 56309852 T C OR5M11 Silent p.K294K 0.20 TCGA-CV-7245-01 11 56380575 56380575 C A OR5M1 Missense_Mutation p.R135M 0.41 tolerated(0.07) possibly_damaging(0.77) TCGA-CV-7245-01 11 57313764 57313764 G - SMTNL1 Frame_Shift_Del p.G396Vfs*14 0.44 TCGA-CV-7245-01 11 58170806 58170806 A G OR5B3 Missense_Mutation p.F26S 0.25 deleterious_low_confidence(0.02) benign(0.089) TCGA-CV-7245-01 11 6023944 6023944 C A OR56A4 Missense_Mutation p.R145S 0.29 deleterious(0.02) benign(0.008) TCGA-CV-7245-01 11 62343587 62343587 C T TUT1 Missense_Mutation p.R573H 0.22 deleterious(0) probably_damaging(0.996) TCGA-CV-7245-01 11 64335111 64335111 C A SLC22A11 Missense_Mutation p.L367M 0.51 deleterious(0) probably_damaging(0.955) TCGA-CV-7245-01 11 64367324 64367324 C T SLC22A12 Missense_Mutation p.A416V 0.20 tolerated(0.07) possibly_damaging(0.608) TCGA-CV-7245-01 11 66834226 66834226 C T RHOD Missense_Mutation p.R80C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 11 68177399 68177399 C T LRP5 Silent p.F703F 0.27 TCGA-CV-7245-01 11 68540781 68540781 C T CPT1A Silent p.T564T 0.18 TCGA-CV-7245-01 11 75150960 75150960 G T GDPD5 Missense_Mutation p.S507Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 11 94533100 94533100 G T AMOTL1 Missense_Mutation p.E248D 0.18 tolerated(0.27) benign(0.015) TCGA-CV-7245-01 11 9466672 9466672 A C IPO7 Silent p.G1016G 0.22 TCGA-CV-7245-01 12 10147807 10147807 G T CLEC1B Silent p.V159V 0.15 TCGA-CV-7245-01 12 109182593 109182593 T C SSH1 Missense_Mutation p.K774R 0.40 tolerated_low_confidence(0.23) benign(0.011) TCGA-CV-7245-01 12 110230484 110230484 C A TRPV4 Silent p.T599T 0.34 TCGA-CV-7245-01 12 111089187 111089187 C G HVCN1 Missense_Mutation p.V160L 0.36 deleterious(0.04) probably_damaging(0.927) TCGA-CV-7245-01 12 11508512 11508512 C A PRB1 5'UTR 0.13 TCGA-CV-7245-01 12 117662875 117662875 T C NOS1 Missense_Mutation p.I1292V 0.39 deleterious(0.05) benign(0.021) TCGA-CV-7245-01 12 122825885 122825885 T A CLIP1 Silent p.L622L 0.41 TCGA-CV-7245-01 12 126004094 126004094 G T TMEM132B Missense_Mutation p.D401Y 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-CV-7245-01 12 12618755 12618755 C A LOH12CR1 3'UTR 0.42 TCGA-CV-7245-01 12 132491392 132491392 G A EP400 Missense_Mutation p.A1092T 0.38 unknown(0) TCGA-CV-7245-01 12 20769241 20769241 T C PDE3A Silent p.G449G 0.29 TCGA-CV-7245-01 12 20874784 20874784 G T SLCO1C1 Missense_Mutation p.W274C 0.35 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 12 21472438 21472438 C T SLCO1A2 Intron 0.29 TCGA-CV-7245-01 12 29630038 29630038 T C OVCH1 Missense_Mutation p.I458M 0.24 tolerated(0.05) benign(0.121) TCGA-CV-7245-01 12 39716684 39716684 C A KIF21A Missense_Mutation p.A1153S 0.23 tolerated(0.07) possibly_damaging(0.908) TCGA-CV-7245-01 12 39724658 39724658 T G KIF21A Missense_Mutation p.K1070T 0.20 deleterious(0) probably_damaging(0.968) TCGA-CV-7245-01 12 41418967 41418967 G A CNTN1 Missense_Mutation p.A847T 0.17 tolerated(0.58) benign(0) TCGA-CV-7245-01 12 47629873 47629873 T C PCED1B Missense_Mutation p.S343P 0.06 tolerated(0.2) benign(0.004) TCGA-CV-7245-01 12 4835951 4835951 C T GALNT8 Silent p.N155N 0.33 TCGA-CV-7245-01 12 5021762 5021762 C T KCNA1 Silent p.V406V 0.36 TCGA-CV-7245-01 12 52312877 52312877 C A ACVRL1 Missense_Mutation p.P452H 0.23 tolerated(0.07) benign(0.032) TCGA-CV-7245-01 12 52756641 52756641 G T KRT85 Nonsense_Mutation p.C358* 0.35 TCGA-CV-7245-01 12 55614811 55614811 G C OR10A7 Translation_Start_Site p.M1? 0.18 deleterious(0) benign(0.376) TCGA-CV-7245-01 12 56113343 56113343 A T BLOC1S1 Missense_Mutation p.T138S 0.33 tolerated(0.47) benign(0.037) TCGA-CV-7245-01 12 57578167 57578167 G A LRP1 Missense_Mutation p.G2040S 0.33 probably_damaging(0.974) TCGA-CV-7245-01 12 57969038 57969038 C G KIF5A Missense_Mutation p.Q630E 0.12 deleterious(0) benign(0.15) TCGA-CV-7245-01 12 57971523 57971523 C A KIF5A Silent p.S776S 0.18 TCGA-CV-7245-01 12 62147483 62147483 G T FAM19A2 Missense_Mutation p.L102I 0.31 deleterious(0) probably_damaging(0.926) TCGA-CV-7245-01 12 64587735 64587735 C T C12orf66 Missense_Mutation p.E409K 0.32 deleterious(0.01) possibly_damaging(0.529) TCGA-CV-7245-01 12 68551716 68551716 A T IFNG Missense_Mutation p.F115I 0.20 deleterious(0) probably_damaging(0.998) TCGA-CV-7245-01 12 68595635 68595635 C T IL26 Missense_Mutation p.S169N 0.38 tolerated(0.3) benign(0.007) TCGA-CV-7245-01 12 72425354 72425354 C T TPH2 Missense_Mutation p.T451I 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 12 72771839 72771839 C G TRHDE Missense_Mutation p.T373R 0.19 deleterious(0) probably_damaging(0.969) TCGA-CV-7245-01 12 7636247 7636247 G C CD163 Missense_Mutation p.P935R 0.28 tolerated(0.07) benign(0.21) TCGA-CV-7245-01 12 83251085 83251085 C G TMTC2 Missense_Mutation p.P127R 0.21 tolerated(0.05) probably_damaging(0.994) TCGA-CV-7245-01 12 8388208 8388208 G A RP11-266K4.9 RNA 0.20 TCGA-CV-7245-01 12 88478552 88478552 C G CEP290 Silent p.L1505L 0.26 TCGA-CV-7245-01 12 9230012 9230012 C A A2M Missense_Mutation p.G1094V 0.25 deleterious(0) possibly_damaging(0.816) TCGA-CV-7245-01 12 93101490 93101490 G T C12orf74 Nonstop_Mutation p.*191Lext*11 0.15 TCGA-CV-7245-01 13 100193874 100193874 C A TM9SF2 Silent p.R324R 0.33 TCGA-CV-7245-01 13 25479525 25479525 C - CENPJ Frame_Shift_Del p.G884Efs*6 0.20 TCGA-CV-7245-01 13 41515109 41515109 T C ELF1 Missense_Mutation p.R402G 0.72 tolerated(0.37) benign(0) TCGA-CV-7245-01 13 45725938 45725938 A G GTF2F2 Silent p.T92T 0.73 TCGA-CV-7245-01 13 61987508 61987508 T C PCDH20 Missense_Mutation p.N242D 0.54 deleterious(0.01) probably_damaging(0.986) TCGA-CV-7245-01 14 101402830 101402830 G A SNORD113-4 RNA 0.29 TCGA-CV-7245-01 14 101421722 101421722 C T SNORD114-5 RNA 0.20 TCGA-CV-7245-01 14 102500485 102500485 T G DYNC1H1 Missense_Mutation p.F3529C 0.15 possibly_damaging(0.886) TCGA-CV-7245-01 14 103416154 103416154 C A CDC42BPB Nonsense_Mutation p.E1133* 0.36 TCGA-CV-7245-01 14 105521755 105521755 C A GPR132 Translation_Start_Site p.M1? 0.34 tolerated_low_confidence(0.71) benign(0.005) TCGA-CV-7245-01 14 105926711 105926711 G T MTA1 Missense_Mutation p.A224S 0.18 tolerated(0.08) possibly_damaging(0.613) TCGA-CV-7245-01 14 20528889 20528889 C T OR4L1 Missense_Mutation p.S229L 0.48 deleterious(0.01) probably_damaging(0.911) TCGA-CV-7245-01 14 20871907 20871907 T A TEP1 Missense_Mutation p.H390L 0.31 tolerated(0.06) benign(0.08) TCGA-CV-7245-01 14 21167532 21167532 T A RNASE4 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.996) TCGA-CV-7245-01 14 22564818 22564819 CA - TRDV1 Frame_Shift_Del p.A90Gfs*? 0.24 TCGA-CV-7245-01 14 22580396 22580396 G A TRAV25 Missense_Mutation p.M7I 0.25 tolerated(0.21) benign(0) TCGA-CV-7245-01 14 22636771 22636771 A T TRAV30 Missense_Mutation p.Q75L 0.20 benign(0.01) TCGA-CV-7245-01 14 23512042 23512042 C T PSMB11 Missense_Mutation p.A203V 0.42 deleterious(0.02) benign(0.016) TCGA-CV-7245-01 14 23862578 23862578 C A MYH6 Missense_Mutation p.K1026N 0.20 tolerated(0.14) probably_damaging(0.999) TCGA-CV-7245-01 14 24108190 24108190 C A DHRS2 Silent p.A39A 0.38 TCGA-CV-7245-01 14 24641797 24641797 C T REC8 Silent p.T12T 0.15 TCGA-CV-7245-01 14 36217975 36217975 T C RALGAPA1 Missense_Mutation p.K356R 0.16 tolerated(0.46) benign(0.002) TCGA-CV-7245-01 14 47504488 47504488 A T MDGA2 Silent p.V515V 0.44 TCGA-CV-7245-01 14 50596694 50596694 G C SOS2 Missense_Mutation p.L1122V 0.16 tolerated(0.5) benign(0.001) TCGA-CV-7245-01 14 58048102 58048102 G A SLC35F4 Missense_Mutation p.L249F 0.16 tolerated(0.51) probably_damaging(0.988) TCGA-CV-7245-01 14 60903645 60903645 T C C14orf39 Missense_Mutation p.Q561R 0.25 deleterious(0.01) possibly_damaging(0.607) TCGA-CV-7245-01 14 75614419 75614419 T G TMED10 Missense_Mutation p.Q120P 0.20 deleterious(0) possibly_damaging(0.904) TCGA-CV-7245-01 14 77274328 77274328 G A ANGEL1 Silent p.D271D 0.11 TCGA-CV-7245-01 14 89300041 89300041 C G TTC8 Missense_Mutation p.P40R 0.17 tolerated_low_confidence(0.45) probably_damaging(0.972) TCGA-CV-7245-01 14 90769079 90769079 C T NRDE2 Missense_Mutation p.E466K 0.14 deleterious(0) possibly_damaging(0.897) TCGA-CV-7245-01 14 94044388 94044388 G T UNC79 Missense_Mutation p.M627I 0.08 deleterious(0.04) benign(0.014) TCGA-CV-7245-01 14 94088986 94088986 C T UNC79 Missense_Mutation p.P1626S 0.15 tolerated_low_confidence(0.91) benign(0.004) TCGA-CV-7245-01 14 94914815 94914815 G T SERPINA11 Silent p.I99I 0.14 TCGA-CV-7245-01 14 94936102 94936102 C A SERPINA9 Missense_Mutation p.A44S 0.13 tolerated(1) benign(0.001) TCGA-CV-7245-01 14 95670290 95670290 C G CLMN Missense_Mutation p.V466L 0.16 tolerated_low_confidence(0.24) benign(0.048) TCGA-CV-7245-01 14 99641175 99641175 G A BCL11B Silent p.P666P 0.21 TCGA-CV-7245-01 15 23890840 23890840 G A MAGEL2 Missense_Mutation p.P81S 0.40 tolerated_low_confidence(0.06) benign(0.144) TCGA-CV-7245-01 15 24922500 24922500 G T NPAP1 Missense_Mutation p.D496Y 0.17 deleterious(0) possibly_damaging(0.873) TCGA-CV-7245-01 15 25330551 25330551 T C SNORD116-18 RNA 0.41 TCGA-CV-7245-01 15 25467514 25467514 G T SNORD115-28 RNA 0.18 TCGA-CV-7245-01 15 26026179 26026179 C G ATP10A Missense_Mutation p.G214A 0.16 deleterious(0.01) probably_damaging(0.938) TCGA-CV-7245-01 15 42167082 42167082 G A SPTBN5 Missense_Mutation p.A1487V 0.15 benign(0.075) TCGA-CV-7245-01 15 43507460 43507460 T C EPB42 Missense_Mutation p.K118R 0.23 deleterious(0.01) probably_damaging(0.967) TCGA-CV-7245-01 15 45660362 45660362 C T GATM Missense_Mutation p.R194Q 0.18 tolerated(0.31) benign(0.074) TCGA-CV-7245-01 15 48051971 48051971 C A SEMA6D 5'UTR 0.28 TCGA-CV-7245-01 15 55965629 55965629 C T PRTG Missense_Mutation p.G598R 0.20 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 15 58458911 58458911 C T AQP9 Nonsense_Mutation p.R51* 0.21 TCGA-CV-7245-01 15 63632630 63632630 C T CA12 Missense_Mutation p.V202I 0.18 tolerated(0.79) benign(0.005) TCGA-CV-7245-01 15 67757586 67757586 T G IQCH Missense_Mutation p.V876G 0.47 tolerated(0.39) benign(0.117) TCGA-CV-7245-01 15 70389190 70389190 G A TLE3 5'UTR 0.21 TCGA-CV-7245-01 15 80988172 80988172 G T ABHD17C Silent p.T134T 0.36 TCGA-CV-7245-01 15 89403596 89403596 G T ACAN Missense_Mutation p.G2291V 0.50 deleterious(0) probably_damaging(0.993) TCGA-CV-7245-01 15 90784840 90784840 C A GDPGP1 Missense_Mutation p.P234T 0.24 tolerated(0.08) possibly_damaging(0.736) TCGA-CV-7245-01 15 98513117 98513117 A G ARRDC4 Missense_Mutation p.Y296C 0.20 tolerated(0.33) probably_damaging(0.99) TCGA-CV-7245-01 16 1035270 1035270 C T SOX8 Missense_Mutation p.H409Y 0.20 tolerated(0.68) probably_damaging(0.993) TCGA-CV-7245-01 16 19488760 19488760 A T TMC5 Splice_Site p.X697_splice 0.23 TCGA-CV-7245-01 16 23203779 23203779 C A SCNN1G Missense_Mutation p.P242H 0.23 deleterious(0) probably_damaging(0.962) TCGA-CV-7245-01 16 31049253 31049253 G C STX4 Missense_Mutation p.V129L 0.18 deleterious(0.01) benign(0.078) TCGA-CV-7245-01 16 4861228 4861228 G T GLYR1 Silent p.A510A 0.22 TCGA-CV-7245-01 16 50118116 50118116 A G HEATR3 Missense_Mutation p.S402G 0.14 tolerated(0.23) benign(0) TCGA-CV-7245-01 16 50733572 50733572 C A NOD2 Missense_Mutation p.H83N 0.52 tolerated(0.32) benign(0.266) TCGA-CV-7245-01 16 51174936 51174936 G T SALL1 Missense_Mutation p.N399K 0.17 deleterious(0.01) benign(0.071) TCGA-CV-7245-01 16 56899255 56899255 C T SLC12A3 Silent p.A36A 0.18 TCGA-CV-7245-01 16 56899257 56899257 A T SLC12A3 Missense_Mutation p.Y37F 0.19 tolerated(0.67) benign(0.088) TCGA-CV-7245-01 16 56917998 56917998 G T SLC12A3 Silent p.A569A 0.11 TCGA-CV-7245-01 16 68591909 68591909 G A ZFP90 Silent p.V14V 0.14 TCGA-CV-7245-01 16 69148385 69148385 G C HAS3 Missense_Mutation p.S293T 0.23 tolerated(0.27) benign(0.005) TCGA-CV-7245-01 16 72132917 72132917 T A DHX38 Missense_Mutation p.S286T 0.23 tolerated(0.29) benign(0.007) TCGA-CV-7245-01 16 737322 737322 C T WDR24 Missense_Mutation p.A252T 0.26 deleterious(0) probably_damaging(0.978) TCGA-CV-7245-01 16 74330781 74330781 G A PSMD7 5'UTR 0.20 TCGA-CV-7245-01 16 75238069 75238069 G T CTRB2 Missense_Mutation p.A261D 0.40 deleterious(0.03) benign(0.007) TCGA-CV-7245-01 16 77759434 77759434 G T NUDT7 Missense_Mutation p.A48S 0.18 tolerated(0.07) possibly_damaging(0.491) TCGA-CV-7245-01 16 77918505 77918505 T C VAT1L Missense_Mutation p.W295R 0.25 deleterious(0) probably_damaging(0.99) TCGA-CV-7245-01 16 85936603 85936603 T A IRF8 Intron 0.14 TCGA-CV-7245-01 16 88747799 88747799 C T SNAI3 Missense_Mutation p.G134R 0.44 tolerated(0.27) benign(0) TCGA-CV-7245-01 16 89696828 89696828 G A DPEP1 Missense_Mutation p.G4R 0.14 tolerated_low_confidence(0.38) benign(0.007) TCGA-CV-7245-01 16 9858285 9858285 G T GRIN2A Missense_Mutation p.A1039E 0.46 tolerated(1) benign(0.001) TCGA-CV-7245-01 17 12916588 12916588 C A ELAC2 Silent p.V165V 0.35 TCGA-CV-7245-01 17 15517267 15517267 C G RP11-385D13.1 Missense_Mutation p.G561R 0.06 tolerated_low_confidence(0.07) possibly_damaging(0.747) TCGA-CV-7245-01 17 34182684 34182684 T A C17orf66 Missense_Mutation p.Q450L 0.48 tolerated(0.07) benign(0.109) TCGA-CV-7245-01 17 38711638 38711638 G A CCR7 Missense_Mutation p.H165Y 0.14 tolerated(0.06) possibly_damaging(0.874) TCGA-CV-7245-01 17 40950990 40950990 A G CNTD1 5'UTR 0.50 TCGA-CV-7245-01 17 40970594 40970594 G C BECN1 Silent p.L152L 0.20 TCGA-CV-7245-01 17 41019918 41019918 T C AOC4P RNA 0.15 TCGA-CV-7245-01 17 41226510 41226510 C T BRCA1 Missense_Mutation p.D1526N 0.22 tolerated(0.4) benign(0.026) TCGA-CV-7245-01 17 5050447 5050447 G A USP6 Missense_Mutation p.V797I 0.28 tolerated_low_confidence(0.51) benign(0.016) TCGA-CV-7245-01 17 54230836 54230836 C A ANKFN1 5'UTR 0.44 TCGA-CV-7245-01 17 60351166 60351166 C T TBC1D3P2 RNA 0.19 TCGA-CV-7245-01 17 61781806 61781806 G A STRADA Missense_Mutation p.P332L 0.49 tolerated(0.6) benign(0.002) TCGA-CV-7245-01 17 62854905 62854905 G A LRRC37A3 Missense_Mutation p.L1601F 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7245-01 17 63133680 63133680 C A RGS9 Missense_Mutation p.Q8K 0.28 tolerated(0.1) benign(0.009) TCGA-CV-7245-01 17 63822338 63822338 T C CEP112 Intron 0.25 TCGA-CV-7245-01 17 7239939 7239939 A T ACAP1 5'UTR 0.40 TCGA-CV-7245-01 17 73497083 73497083 T G CASKIN2 3'UTR 0.62 TCGA-CV-7245-01 17 73738820 73738820 C T ITGB4 Silent p.N980N 0.10 TCGA-CV-7245-01 17 73942818 73942818 C T ACOX1 3'UTR 0.50 TCGA-CV-7245-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.60 deleterious(0) probably_damaging(0.997) TCGA-CV-7245-01 17 76475623 76475623 C A DNAH17 Missense_Mutation p.R2601L 0.13 benign(0.003) TCGA-CV-7245-01 17 78321975 78321975 G A RNF213 Silent p.A3280A 0.42 TCGA-CV-7245-01 18 13621178 13621178 A T LDLRAD4 Missense_Mutation p.I82F 0.26 deleterious(0) benign(0.424) TCGA-CV-7245-01 18 55368510 55368510 G A ATP8B1 Silent p.T143T 0.59 TCGA-CV-7245-01 18 72245483 72245483 C T CNDP1 Missense_Mutation p.T363I 0.50 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 18 74962925 74962925 C G GALR1 Missense_Mutation p.R141G 0.46 tolerated(0.11) benign(0.113) TCGA-CV-7245-01 18 77896155 77896155 G C ADNP2 Silent p.P953P 0.42 TCGA-CV-7245-01 19 10199989 10199989 A C C19orf66 Intron 0.20 TCGA-CV-7245-01 19 11470311 11470311 C T DKFZP761J1410 Missense_Mutation p.A32V 0.10 deleterious(0.03) possibly_damaging(0.458) TCGA-CV-7245-01 19 12256755 12256755 C A ZNF625 Missense_Mutation p.G159V 0.22 deleterious(0.03) possibly_damaging(0.88) TCGA-CV-7245-01 19 12256756 12256756 C A ZNF625 Missense_Mutation p.G159W 0.22 deleterious(0) probably_damaging(0.97) TCGA-CV-7245-01 19 14674476 14674476 A T TECR Missense_Mutation p.Q42L 0.24 tolerated(0.15) benign(0.003) TCGA-CV-7245-01 19 14862462 14862462 C G EMR2 Missense_Mutation p.G604R 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-CV-7245-01 19 18004623 18004623 T A SLC5A5 Silent p.A623A 0.33 TCGA-CV-7245-01 19 18179338 18179338 T A IL12RB1 Splice_Site p.X397_splice 0.14 TCGA-CV-7245-01 19 19042356 19042356 G T HOMER3 Missense_Mutation p.L257M 0.30 deleterious(0.01) possibly_damaging(0.589) TCGA-CV-7245-01 19 20727933 20727933 T A ZNF737 Missense_Mutation p.H359L 0.21 deleterious(0) possibly_damaging(0.829) TCGA-CV-7245-01 19 22154889 22154889 T C ZNF208 Missense_Mutation p.S983G 0.35 tolerated(0.33) benign(0.001) TCGA-CV-7245-01 19 30935396 30935396 T A ZNF536 Silent p.A309A 0.43 TCGA-CV-7245-01 19 36357267 36357267 C T KIRREL2 Missense_Mutation p.P667L 0.33 deleterious(0.02) possibly_damaging(0.548) TCGA-CV-7245-01 19 37441991 37441991 A T ZNF568 3'Flank 0.34 TCGA-CV-7245-01 19 38167212 38167212 T C ZNF781 Intron 0.17 TCGA-CV-7245-01 19 44536610 44536610 A G ZNF222 Missense_Mutation p.I301M 0.28 tolerated(0.11) benign(0.373) TCGA-CV-7245-01 19 4704017 4704017 C T DPP9 Missense_Mutation p.R217Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7245-01 19 48620966 48620966 G A LIG1 Missense_Mutation p.P838S 0.29 deleterious(0.03) possibly_damaging(0.733) TCGA-CV-7245-01 19 49658346 49658346 G T HRC Missense_Mutation p.S50Y 0.17 deleterious(0.02) benign(0.007) TCGA-CV-7245-01 19 51022385 51022385 C A LRRC4B Silent p.L195L 0.21 TCGA-CV-7245-01 19 52619407 52619407 C A ZNF616 Missense_Mutation p.S337I 0.21 tolerated(0.25) benign(0.006) TCGA-CV-7245-01 19 53761833 53761833 G C VN1R2 Missense_Mutation p.V69L 0.36 deleterious_low_confidence(0) benign(0) TCGA-CV-7245-01 19 54313795 54313795 T A NLRP12 Missense_Mutation p.Y373F 0.26 deleterious(0.01) benign(0.335) TCGA-CV-7245-01 19 55377864 55377864 C A KIR3DL2 Missense_Mutation p.T382K 0.16 deleterious(0) benign(0.15) TCGA-CV-7245-01 19 56300307 56300307 T A NLRP11 Silent p.R907R 0.26 TCGA-CV-7245-01 19 57066324 57066324 A G ZFP28 Missense_Mutation p.T724A 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7245-01 19 57301415 57301415 T C ZIM2 Intron 0.44 TCGA-CV-7245-01 19 58118332 58118332 G C ZNF530 Missense_Mutation p.R480P 0.51 tolerated(0.16) possibly_damaging(0.828) TCGA-CV-7245-01 19 58370975 58370975 C T ZNF587 Nonsense_Mutation p.Q399* 0.40 TCGA-CV-7245-01 19 6442073 6442073 G T SLC25A23 Silent p.P440P 0.14 TCGA-CV-7245-01 19 7626150 7626150 A T PNPLA6 Missense_Mutation p.R1334W 0.18 deleterious(0) possibly_damaging(0.818) TCGA-CV-7245-01 19 8464858 8464858 G T RAB11B Missense_Mutation p.R51L 0.27 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CV-7245-01 19 9062568 9062568 G T MUC16 Missense_Mutation p.S8293Y 0.17 unknown(0) TCGA-CV-7245-01 19 9071210 9071210 T C MUC16 Silent p.T5412T 0.18 TCGA-CV-7245-01 1 101200228 101200228 A G VCAM1 Missense_Mutation p.I655V 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7245-01 1 103444450 103444450 C A COL11A1 Missense_Mutation p.G892V 0.61 unknown(0) TCGA-CV-7245-01 1 111492660 111492660 G T LRIF1 Missense_Mutation p.A561E 0.35 tolerated(0.3) benign(0.07) TCGA-CV-7245-01 1 119474274 119474274 A C TBX15 Missense_Mutation p.I23M 0.18 deleterious(0) probably_damaging(0.968) TCGA-CV-7245-01 1 12418560 12418560 G T VPS13D Silent p.P3348P 0.70 TCGA-CV-7245-01 1 147380375 147380375 A T GJA8 Missense_Mutation p.H98L 0.23 deleterious(0) possibly_damaging(0.678) TCGA-CV-7245-01 1 150480696 150480696 C G ECM1 Missense_Mutation p.T4R 0.33 tolerated_low_confidence(0.08) benign(0.333) TCGA-CV-7245-01 1 152275869 152275869 A T FLG Missense_Mutation p.H3831Q 0.23 unknown(0) TCGA-CV-7245-01 1 153430420 153430420 G T S100A7 Silent p.A56A 0.26 TCGA-CV-7245-01 1 161059164 161059164 G A PVRL4 5'UTR 0.52 TCGA-CV-7245-01 1 171077253 171077253 G T FMO3 Missense_Mutation p.S173I 0.33 deleterious(0) probably_damaging(0.994) TCGA-CV-7245-01 1 171168602 171168602 T G FMO2 Missense_Mutation p.V201G 0.14 deleterious(0.05) benign(0.328) TCGA-CV-7245-01 1 173446506 173446506 G C PRDX6 5'UTR 0.38 TCGA-CV-7245-01 1 17942457 17942457 C G ARHGEF10L Intron 0.74 TCGA-CV-7245-01 1 179620116 179620116 A G TDRD5 Missense_Mutation p.T639A 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 1 186370175 186370175 G T OCLM 5'UTR 0.17 TCGA-CV-7245-01 1 18808770 18808770 T C KLHDC7A Missense_Mutation p.L432P 0.62 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 1 190250824 190250824 C A BRINP3 Missense_Mutation p.G98V 0.45 tolerated(0.15) benign(0.321) TCGA-CV-7245-01 1 207105832 207105832 C A PIGR Silent p.G659G 0.17 TCGA-CV-7245-01 1 207648236 207648236 T A CR2 Missense_Mutation p.F797L 0.22 deleterious(0.01) possibly_damaging(0.869) TCGA-CV-7245-01 1 21054083 21054083 A T SH2D5 Missense_Mutation p.F34Y 0.67 deleterious(0) probably_damaging(0.996) TCGA-CV-7245-01 1 212799980 212799980 G T FAM71A Missense_Mutation p.E587D 0.19 deleterious(0.02) benign(0.064) TCGA-CV-7245-01 1 216062110 216062110 G C USH2A Missense_Mutation p.I2627M 0.23 possibly_damaging(0.77) TCGA-CV-7245-01 1 22179293 22179293 C T HSPG2 Silent p.V2208V 0.29 TCGA-CV-7245-01 1 228554824 228554824 G T OBSCN Missense_Mutation p.G7483W 0.25 probably_damaging(0.957) TCGA-CV-7245-01 1 231360005 231360005 G A C1orf131 3'UTR 0.30 TCGA-CV-7245-01 1 233482322 233482322 G A MLK4 Missense_Mutation p.E314K 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 1 237796940 237796940 A T RYR2 Silent p.I2206I 0.28 TCGA-CV-7245-01 1 245530230 245530230 G C KIF26B Missense_Mutation p.C187S 0.18 deleterious(0) unknown(0) TCGA-CV-7245-01 1 246518367 246518367 C A SMYD3 Missense_Mutation p.C65F 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 1 247200823 247200823 T A ZNF670 Missense_Mutation p.E366D 0.30 deleterious(0.02) benign(0.013) TCGA-CV-7245-01 1 247587342 247587342 C T NLRP3 Silent p.P199P 0.44 TCGA-CV-7245-01 1 26138256 26138256 C T SEPN1 Silent p.H389H 0.19 TCGA-CV-7245-01 1 27949593 27949593 T A FGR Missense_Mutation p.T97S 0.19 tolerated(1) benign(0.042) TCGA-CV-7245-01 1 44054597 44054597 G T PTPRF Missense_Mutation p.R292L 0.23 deleterious(0) benign(0.175) TCGA-CV-7245-01 1 44058190 44058190 C G PTPRF Silent p.L577L 0.65 TCGA-CV-7245-01 1 44058210 44058210 C T PTPRF Missense_Mutation p.A584V 0.61 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 1 48764465 48764465 C A SPATA6 Nonsense_Mutation p.E463* 0.29 TCGA-CV-7245-01 1 55207195 55207195 G A TTC4 3'UTR 0.48 TCGA-CV-7245-01 1 74506982 74506982 G C LRRIQ3 Missense_Mutation p.L545V 0.24 tolerated(0.13) benign(0.173) TCGA-CV-7245-01 1 76365339 76365339 C G MSH4 Nonsense_Mutation p.S856* 0.29 TCGA-CV-7245-01 1 94057756 94057756 G T BCAR3 Intron 0.39 TCGA-CV-7245-01 20 10653648 10653648 C A JAG1 Missense_Mutation p.G30W 0.13 deleterious(0.01) benign(0.302) TCGA-CV-7245-01 20 13789488 13789488 G A NDUFAF5 Missense_Mutation p.D240N 0.41 deleterious(0) probably_damaging(0.947) TCGA-CV-7245-01 20 13840045 13840045 G T SEL1L2 Intron 0.13 TCGA-CV-7245-01 20 13868451 13868451 C T SEL1L2 Missense_Mutation p.V237I 0.17 tolerated(0.18) benign(0.026) TCGA-CV-7245-01 20 17492691 17492691 T C BFSP1 Missense_Mutation p.Y186C 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 20 18296949 18296949 A G ZNF133 Missense_Mutation p.Q484R 0.26 deleterious(0.03) benign(0.033) TCGA-CV-7245-01 20 18297420 18297420 C T ZNF133 Missense_Mutation p.P641L 0.19 tolerated_low_confidence(0.06) benign(0.021) TCGA-CV-7245-01 20 20350324 20350325 - A INSM1 Frame_Shift_Ins p.Y473Vfs*81 0.15 TCGA-CV-7245-01 20 23472234 23472234 C A CST8 5'UTR 0.25 TCGA-CV-7245-01 20 25057164 25057164 C A VSX1 Silent p.G277G 0.18 TCGA-CV-7245-01 20 30065673 30065673 C A REM1 Missense_Mutation p.T128N 0.29 deleterious(0) probably_damaging(0.96) TCGA-CV-7245-01 20 30388918 30388918 G T TPX2 3'UTR 0.17 TCGA-CV-7245-01 20 31825963 31825963 T A BPIFA1 Missense_Mutation p.L88H 0.20 deleterious(0) probably_damaging(0.968) TCGA-CV-7245-01 20 33033227 33033227 A T ITCH Missense_Mutation p.Q408H 0.14 deleterious(0.01) benign(0.022) TCGA-CV-7245-01 20 35879508 35879508 G A GHRH 3'UTR 0.13 TCGA-CV-7245-01 20 3675353 3675353 T A SIGLEC1 Silent p.S967S 0.19 TCGA-CV-7245-01 20 3677790 3677790 G A SIGLEC1 Silent p.C774C 0.26 TCGA-CV-7245-01 20 40101970 40101970 C T CHD6 Missense_Mutation p.D886N 0.10 deleterious(0) probably_damaging(0.963) TCGA-CV-7245-01 20 47246080 47246080 C T PREX1 Missense_Mutation p.G1558E 0.18 deleterious(0) possibly_damaging(0.821) TCGA-CV-7245-01 20 49508160 49508160 T A ADNP Missense_Mutation p.S1031C 0.20 deleterious_low_confidence(0.03) benign(0.339) TCGA-CV-7245-01 20 57829617 57829617 C G ZNF831 Missense_Mutation p.S1618C 0.18 deleterious(0.05) benign(0.034) TCGA-CV-7245-01 20 6021815 6021815 G T LRRN4 Silent p.G692G 0.19 TCGA-CV-7245-01 20 60511804 60511804 G T CDH4 Missense_Mutation p.A852S 0.14 deleterious(0) probably_damaging(0.979) TCGA-CV-7245-01 20 60574130 60574130 C A TAF4 Missense_Mutation p.R941L 0.19 probably_damaging(0.992) TCGA-CV-7245-01 20 62493624 62493624 A T ABHD16B Missense_Mutation p.Y244F 0.25 tolerated(0.28) probably_damaging(0.999) TCGA-CV-7245-01 21 34878379 34878379 G T GART Silent p.R829R 0.47 TCGA-CV-7245-01 21 34878381 34878381 G A GART Missense_Mutation p.T828I 0.48 tolerated(0.06) possibly_damaging(0.714) TCGA-CV-7245-01 21 37652588 37652588 A G DOPEY2 Missense_Mutation p.K1992R 0.22 tolerated(1) benign(0.008) TCGA-CV-7245-01 21 39672100 39672100 A T KCNJ15 Missense_Mutation p.Y306F 0.63 tolerated(0.09) benign(0.003) TCGA-CV-7245-01 21 40578121 40578121 T C BRWD1 Missense_Mutation p.Q1426R 0.68 tolerated(0.43) probably_damaging(0.953) TCGA-CV-7245-01 21 41142930 41142930 C A IGSF5 Missense_Mutation p.T169N 0.61 tolerated(0.18) benign(0.076) TCGA-CV-7245-01 21 45753057 45753057 C A C21orf2 Missense_Mutation p.A78S 0.32 tolerated(0.6) possibly_damaging(0.6) TCGA-CV-7245-01 22 25601255 25601255 G A CRYBB3 Silent p.V132V 0.32 TCGA-CV-7245-01 22 35481716 35481716 A T ISX 3'UTR 0.79 TCGA-CV-7245-01 22 36054987 36054987 G A APOL6 Missense_Mutation p.V126M 0.19 deleterious(0.05) probably_damaging(0.934) TCGA-CV-7245-01 22 36140242 36140242 T G RBFOX2 3'Flank 0.08 TCGA-CV-7245-01 22 37407115 37407115 C G TST Missense_Mutation p.A283P 0.10 deleterious(0) possibly_damaging(0.814) TCGA-CV-7245-01 22 40815102 40815102 G A MKL1 Missense_Mutation p.T447M 0.39 tolerated(0.05) probably_damaging(0.993) TCGA-CV-7245-01 22 41922444 41922444 C G ACO2 Missense_Mutation p.A647G 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.837) TCGA-CV-7245-01 22 42383671 42383671 C T SEPT3 Silent p.F153F 0.28 TCGA-CV-7245-01 22 43036197 43036197 G A ATP5L2 Silent p.A28A 0.17 TCGA-CV-7245-01 22 46760459 46760459 C T CELSR1 Missense_Mutation p.S2910N 0.76 tolerated(0.4) benign(0.004) TCGA-CV-7245-01 22 50307385 50307385 C A ALG12 Missense_Mutation p.R10L 0.24 benign(0.041) TCGA-CV-7245-01 22 50705104 50705104 A C MAPK11 Intron 0.18 TCGA-CV-7245-01 2 100199351 100199351 C A AFF3 Missense_Mutation p.R926L 0.40 tolerated(0.06) benign(0.109) TCGA-CV-7245-01 2 105889341 105889341 G C TGFBRAP1 Missense_Mutation p.S648C 0.28 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 2 112942839 112942839 C T FBLN7 Silent p.T290T 0.17 TCGA-CV-7245-01 2 113316883 113316883 A G POLR1B Silent p.L448L 0.22 TCGA-CV-7245-01 2 138724713 138724713 G T HNMT Intron 0.22 TCGA-CV-7245-01 2 141458106 141458106 G T LRP1B Missense_Mutation p.A2171D 0.13 possibly_damaging(0.665) TCGA-CV-7245-01 2 142004851 142004851 C G LRP1B Missense_Mutation p.S179T 0.30 benign(0.016) TCGA-CV-7245-01 2 152138463 152138463 T C NMI Missense_Mutation p.Q59R 0.18 tolerated(0.18) benign(0.088) TCGA-CV-7245-01 2 155566132 155566132 G A KCNJ3 Silent p.E240E 0.26 TCGA-CV-7245-01 2 162876781 162876781 G T DPP4 Missense_Mutation p.T401N 0.22 tolerated(0.24) benign(0.001) TCGA-CV-7245-01 2 166892851 166892851 C G SCN1A Missense_Mutation p.D1046H 0.50 deleterious(0.03) possibly_damaging(0.606) TCGA-CV-7245-01 2 168107290 168107290 G T XIRP2 Missense_Mutation p.A3130S 0.47 possibly_damaging(0.574) TCGA-CV-7245-01 2 170028586 170028586 A G LRP2 Silent p.P3734P 0.48 TCGA-CV-7245-01 2 179395060 179395060 C G TTN Missense_Mutation p.D35428H 0.17 TCGA-CV-7245-01 2 179419418 179419418 G T TTN Silent p.T29552T 0.42 TCGA-CV-7245-01 2 179442239 179442239 T C TTN Splice_Site p.X22942_splice 0.31 TCGA-CV-7245-01 2 179479512 179479512 C G TTN Intron 0.24 TCGA-CV-7245-01 2 179490067 179490067 T C TTN Silent p.L14827L 0.56 TCGA-CV-7245-01 2 179578835 179578835 C T TTN Silent p.E8850E 0.18 TCGA-CV-7245-01 2 179612696 179612696 C A TTN Intron 0.15 TCGA-CV-7245-01 2 179617888 179617888 A G TTN Silent p.H3758H 0.17 TCGA-CV-7245-01 2 17998364 17998364 G A MSGN1 Silent p.A193A 0.52 TCGA-CV-7245-01 2 185801353 185801353 T A ZNF804A Silent p.T410T 0.24 TCGA-CV-7245-01 2 185803105 185803105 T A ZNF804A Nonsense_Mutation p.Y994* 0.48 TCGA-CV-7245-01 2 196753557 196753557 T A DNAH7 Missense_Mutation p.E1732V 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 2 198263271 198263271 C G SF3B1 Silent p.L1016L 0.28 TCGA-CV-7245-01 2 198646475 198646475 G A BOLL Missense_Mutation p.R46C 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 2 202494493 202494493 C A TMEM237 Missense_Mutation p.W212C 0.24 deleterious(0) probably_damaging(0.99) TCGA-CV-7245-01 2 209302279 209302279 G T PTH2R Nonsense_Mutation p.E66* 0.44 TCGA-CV-7245-01 2 215301351 215301351 A T VWC2L Splice_Site p.X131_splice 0.57 TCGA-CV-7245-01 2 219029140 219029140 G T CXCR1 Missense_Mutation p.D265E 0.23 deleterious(0) possibly_damaging(0.759) TCGA-CV-7245-01 2 227731999 227731999 G T RHBDD1 Missense_Mutation p.W177C 0.50 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 2 233244620 233244620 C A ALPP Missense_Mutation p.Q211K 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 2 233272622 233272622 C A ALPPL2 Missense_Mutation p.H181Q 0.21 deleterious(0) probably_damaging(0.994) TCGA-CV-7245-01 2 234112790 234112790 G C INPP5D Missense_Mutation p.K986N 0.27 deleterious(0.01) possibly_damaging(0.691) TCGA-CV-7245-01 2 234862641 234862641 C T TRPM8 Silent p.A407A 0.76 TCGA-CV-7245-01 2 242648716 242648716 G T ING5 Silent p.L65L 0.21 TCGA-CV-7245-01 2 27301892 27301892 G T EMILIN1 5'UTR 0.50 TCGA-CV-7245-01 2 33740206 33740206 G C RASGRP3 Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.914) TCGA-CV-7245-01 2 36583743 36583743 A G CRIM1 Missense_Mutation p.E103G 0.16 tolerated(0.22) benign(0.034) TCGA-CV-7245-01 2 37235842 37235842 T C HEATR5B Silent p.P1478P 0.12 TCGA-CV-7245-01 2 46607729 46607729 C T EPAS1 Missense_Mutation p.P640S 0.33 deleterious(0.02) possibly_damaging(0.893) TCGA-CV-7245-01 2 48874155 48874155 C T STON1-GTF2A1L Missense_Mutation p.P1022S 0.21 tolerated(0.42) benign(0.054) TCGA-CV-7245-01 2 49190015 49190015 T A FSHR Missense_Mutation p.M649L 0.23 tolerated(0.63) benign(0.009) TCGA-CV-7245-01 2 50724827 50724827 C A NRXN1 Missense_Mutation p.R881S 0.22 tolerated(0.06) possibly_damaging(0.581) TCGA-CV-7245-01 2 54137242 54137242 C A PSME4 Nonsense_Mutation p.E848* 0.46 TCGA-CV-7245-01 2 69043495 69043495 G T ARHGAP25 Splice_Site p.X294_splice 0.22 TCGA-CV-7245-01 2 70314821 70314821 A G PCBP1 5'UTR 0.43 TCGA-CV-7245-01 2 70520783 70520783 G A SNRPG 5'UTR 0.20 TCGA-CV-7245-01 2 72722617 72722617 T A EXOC6B Missense_Mutation p.N499Y 0.12 tolerated(0.1) possibly_damaging(0.678) TCGA-CV-7245-01 2 74750470 74750470 T A DQX1 Missense_Mutation p.Q337H 0.18 tolerated(0.27) benign(0) TCGA-CV-7245-01 2 74867187 74867187 C T M1AP Silent p.Q72Q 0.50 TCGA-CV-7245-01 2 77745762 77745762 A T LRRTM4 Silent p.P411P 0.16 TCGA-CV-7245-01 2 79348716 79348716 G T REG1A Missense_Mutation p.Q31H 0.32 deleterious(0) benign(0.338) TCGA-CV-7245-01 2 80530349 80530349 C A LRRTM1 Missense_Mutation p.S199I 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7245-01 2 90044239 90044239 G T IGKV2D-24 Nonsense_Mutation p.G54* 0.32 TCGA-CV-7245-01 2 98275915 98275915 C T ACTR1B Missense_Mutation p.R72H 0.29 tolerated(0.08) benign(0.035) TCGA-CV-7245-01 2 99155434 99155434 G A INPP4A Silent p.L220L 0.44 TCGA-CV-7245-01 3 102196426 102196426 A G ZPLD1 Silent p.L420L 0.25 TCGA-CV-7245-01 3 10960130 10960130 C T SLC6A11 Missense_Mutation p.A371V 0.68 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7245-01 3 110837676 110837676 A G PVRL3 Missense_Mutation p.T226A 0.16 deleterious(0) probably_damaging(0.996) TCGA-CV-7245-01 3 110837725 110837725 G T PVRL3 Missense_Mutation p.R242M 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 3 113724674 113724674 T G KIAA1407 Missense_Mutation p.N517H 0.17 tolerated(0.23) possibly_damaging(0.482) TCGA-CV-7245-01 3 115560725 115560725 G C LSAMP Missense_Mutation p.L296V 0.11 deleterious(0) probably_damaging(0.992) TCGA-CV-7245-01 3 119236160 119236160 G A TIMMDC1 Silent p.E235E 0.54 TCGA-CV-7245-01 3 123471326 123471326 G T MYLK Missense_Mutation p.S75R 0.46 tolerated(0.31) possibly_damaging(0.628) TCGA-CV-7245-01 3 128514247 128514247 A T RAB7A Missense_Mutation p.I13F 0.56 deleterious(0.01) probably_damaging(0.963) TCGA-CV-7245-01 3 137803000 137803000 G A DZIP1L Silent p.A386A 0.16 TCGA-CV-7245-01 3 145913025 145913025 C T PLSCR4 Silent p.R277R 0.08 TCGA-CV-7245-01 3 147114155 147114155 G A ZIC4 Missense_Mutation p.P108S 0.23 tolerated(0.84) benign(0.001) TCGA-CV-7245-01 3 157082158 157082158 C A VEPH1 Missense_Mutation p.G424V 0.16 tolerated(0.07) benign(0.082) TCGA-CV-7245-01 3 157823782 157823782 G T SHOX2 Missense_Mutation p.S11Y 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-7245-01 3 158980399 158980399 C - IQCJ-SCHIP1 Frame_Shift_Del p.P74Hfs*9 0.37 TCGA-CV-7245-01 3 167196746 167196746 T G WDR49 Missense_Mutation p.K672Q 0.32 deleterious(0.01) possibly_damaging(0.642) TCGA-CV-7245-01 3 167250747 167250747 A T WDR49 Missense_Mutation p.I306N 0.17 deleterious(0) probably_damaging(0.997) TCGA-CV-7245-01 3 169514002 169514002 G C LRRC34 Missense_Mutation p.A355G 0.46 deleterious(0) probably_damaging(0.984) TCGA-CV-7245-01 3 170789099 170789099 C T TNIK Silent p.R1154R 0.37 TCGA-CV-7245-01 3 172835472 172835472 T C SPATA16 Missense_Mutation p.Y17C 0.39 tolerated_low_confidence(0.19) possibly_damaging(0.878) TCGA-CV-7245-01 3 179107824 179107824 A T MFN1 Missense_Mutation p.Q682L 0.15 tolerated(0.09) probably_damaging(0.999) TCGA-CV-7245-01 3 183855540 183855540 G A EIF2B5 Silent p.V151V 0.35 TCGA-CV-7245-01 3 190995894 190995894 T C UTS2B Missense_Mutation p.K57E 0.56 deleterious(0.01) benign(0.165) TCGA-CV-7245-01 3 19554594 19554594 C T KCNH8 Missense_Mutation p.R738C 0.26 deleterious(0.02) benign(0.001) TCGA-CV-7245-01 3 195782076 195782076 C T TFRC Missense_Mutation p.E592K 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7245-01 3 196096339 196096339 T C UBXN7 Missense_Mutation p.Y220C 0.20 deleterious(0) probably_damaging(0.996) TCGA-CV-7245-01 3 196388450 196388450 C A NRROS Missense_Mutation p.L646M 0.24 tolerated(0.09) benign(0.195) TCGA-CV-7245-01 3 28562532 28562532 G - ZCWPW2 Frame_Shift_Del p.Q278Hfs*21 0.28 TCGA-CV-7245-01 3 32932010 32932010 G T TRIM71 Silent p.L438L 0.64 TCGA-CV-7245-01 3 367721 367721 T A CHL1 Nonsense_Mutation p.C57* 0.54 TCGA-CV-7245-01 3 38793848 38793848 C G SCN10A Silent p.L539L 0.55 TCGA-CV-7245-01 3 3886778 3886778 C G LRRN1 Missense_Mutation p.N151K 0.25 deleterious(0) probably_damaging(0.995) TCGA-CV-7245-01 3 433478 433478 T A CHL1 Missense_Mutation p.I971K 0.25 tolerated(0.08) benign(0.029) TCGA-CV-7245-01 3 44952882 44952882 C A TGM4 Missense_Mutation p.Q633K 0.30 tolerated(0.4) benign(0.065) TCGA-CV-7245-01 3 46062422 46062422 C T XCR1 3'UTR 0.43 TCGA-CV-7245-01 3 52325847 52325847 G T GLYCTK Missense_Mutation p.R205L 0.47 deleterious(0.02) benign(0.296) TCGA-CV-7245-01 4 10445495 10445495 C A ZNF518B Missense_Mutation p.D820Y 0.27 deleterious(0.02) possibly_damaging(0.635) TCGA-CV-7245-01 4 114278239 114278239 C T ANK2 Missense_Mutation p.T2822I 0.55 benign(0.005) TCGA-CV-7245-01 4 118975167 118975167 C T NDST3 Silent p.Y34Y 0.20 TCGA-CV-7245-01 4 118975575 118975575 G T NDST3 Missense_Mutation p.K170N 0.39 tolerated(1) benign(0.001) TCGA-CV-7245-01 4 128726265 128726265 A T HSPA4L Silent p.V341V 0.61 TCGA-CV-7245-01 4 141847144 141847144 G T RNF150 Missense_Mutation p.A325D 0.10 deleterious(0) possibly_damaging(0.585) TCGA-CV-7245-01 4 151142904 151142904 G T DCLK2 Missense_Mutation p.G420V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 4 153243903 153243903 C T FBXW7 3'UTR 0.36 TCGA-CV-7245-01 4 153565566 153565566 C T TMEM154 Splice_Site p.X131_splice 0.29 TCGA-CV-7245-01 4 155219268 155219268 G T DCHS2 Missense_Mutation p.D1611E 0.55 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 4 155226261 155226261 A G DCHS2 Missense_Mutation p.F1340L 0.51 tolerated(0.22) benign(0.083) TCGA-CV-7245-01 4 164534561 164534561 A G MARCH1 Intron 0.58 TCGA-CV-7245-01 4 16513685 16513685 G A LDB2 Missense_Mutation p.H220Y 0.39 deleterious(0.01) probably_damaging(0.961) TCGA-CV-7245-01 4 170608837 170608837 G T CLCN3 Missense_Mutation p.W116L 0.61 tolerated(0.37) probably_damaging(0.985) TCGA-CV-7245-01 4 173873273 173873273 C G GALNTL6 Missense_Mutation p.T412R 0.16 tolerated(0.08) possibly_damaging(0.463) TCGA-CV-7245-01 4 177605117 177605117 C G VEGFC Missense_Mutation p.C408S 0.54 deleterious(0) probably_damaging(0.998) TCGA-CV-7245-01 4 177649124 177649124 T A VEGFC Splice_Site p.X121_splice 0.29 TCGA-CV-7245-01 4 187073054 187073054 T C FAM149A Intron 0.69 TCGA-CV-7245-01 4 188924027 188924027 C A ZFP42 Silent p.P22P 0.15 TCGA-CV-7245-01 4 39507339 39507339 C A UGDH Missense_Mutation p.R312S 0.27 tolerated(0.43) benign(0.006) TCGA-CV-7245-01 4 55161582 55161582 G C PDGFRA 3'UTR 0.16 TCGA-CV-7245-01 4 69973976 69973976 G A UGT2B7 Missense_Mutation p.D416N 0.19 tolerated(0.46) benign(0.103) TCGA-CV-7245-01 4 70346550 70346550 C A UGT2B4 Missense_Mutation p.W463C 0.36 deleterious(0) possibly_damaging(0.624) TCGA-CV-7245-01 4 76415818 76415818 T C RCHY1 Silent p.P210P 0.09 TCGA-CV-7245-01 4 85654614 85654614 C G WDFY3 Missense_Mutation p.R2381T 0.16 deleterious(0) probably_damaging(0.992) TCGA-CV-7245-01 4 85657475 85657475 C A WDFY3 Nonsense_Mutation p.E2255* 0.33 TCGA-CV-7245-01 4 87728986 87728986 C G PTPN13 Missense_Mutation p.A2345G 0.22 tolerated(0.08) possibly_damaging(0.482) TCGA-CV-7245-01 4 96222797 96222797 C A UNC5C Silent p.A150A 0.50 TCGA-CV-7245-01 4 96469982 96469982 C T UNC5C Silent p.A9A 0.53 TCGA-CV-7245-01 5 101709176 101709176 A T SLCO6A1 Silent p.T680T 0.19 TCGA-CV-7245-01 5 102493935 102493935 G T PPIP5K2 Missense_Mutation p.W511C 0.36 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 5 11159793 11159793 G T CTNND2 Missense_Mutation p.A685E 0.10 tolerated(0.47) benign(0.019) TCGA-CV-7245-01 5 11236908 11236908 C A CTNND2 Silent p.L552L 0.24 TCGA-CV-7245-01 5 1244767 1244767 C A SLC6A18 Missense_Mutation p.P514H 0.12 deleterious(0) possibly_damaging(0.852) TCGA-CV-7245-01 5 126738373 126738373 C T MEGF10 Missense_Mutation p.R306W 0.55 deleterious(0) probably_damaging(0.976) TCGA-CV-7245-01 5 128359310 128359310 C G SLC27A6 Intron 0.40 TCGA-CV-7245-01 5 134029560 134029560 C A SEC24A Silent p.L641L 0.30 TCGA-CV-7245-01 5 13807803 13807803 G T DNAH5 Missense_Mutation p.A2595D 0.27 possibly_damaging(0.887) TCGA-CV-7245-01 5 13839501 13839501 C A DNAH5 Missense_Mutation p.C1949F 0.16 possibly_damaging(0.639) TCGA-CV-7245-01 5 139283936 139283936 G C NRG2 Intron 0.24 TCGA-CV-7245-01 5 140033549 140033549 G A IK Missense_Mutation p.R144K 0.59 tolerated(0.12) benign(0.191) TCGA-CV-7245-01 5 140180929 140180929 G T PCDHA3 Silent p.A49A 0.28 TCGA-CV-7245-01 5 140208678 140208678 C A PCDHA6 Nonsense_Mutation p.C334* 0.41 TCGA-CV-7245-01 5 140475671 140475671 C A PCDHB2 Missense_Mutation p.L433M 0.60 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-7245-01 5 140558615 140558615 G A PCDHB8 Missense_Mutation p.V334I 0.10 tolerated_low_confidence(0.11) benign(0.037) TCGA-CV-7245-01 5 140589218 140589218 T G PCDHB12 Missense_Mutation p.Y247D 0.64 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7245-01 5 140590088 140590088 G T PCDHB12 Missense_Mutation p.G537C 0.60 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7245-01 5 143200051 143200051 T C HMHB1 Missense_Mutation p.L15P 0.31 possibly_damaging(0.883) TCGA-CV-7245-01 5 145477757 145477757 C A PLAC8L1 Missense_Mutation p.S73I 0.63 deleterious(0) probably_damaging(0.933) TCGA-CV-7245-01 5 150722462 150722462 C T SLC36A2 Missense_Mutation p.A143T 0.49 deleterious(0.01) possibly_damaging(0.612) TCGA-CV-7245-01 5 156671418 156671418 T A ITK Missense_Mutation p.L460Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 5 159659189 159659189 C A FABP6 Missense_Mutation p.S100Y 0.53 deleterious(0) probably_damaging(0.987) TCGA-CV-7245-01 5 161115970 161115971 - T GABRA6 Frame_Shift_Ins p.R84Pfs*6 0.31 TCGA-CV-7245-01 5 161302615 161302615 G T GABRA1 Missense_Mutation p.D176Y 0.25 deleterious(0) possibly_damaging(0.608) TCGA-CV-7245-01 5 170239158 170239158 A G GABRP Missense_Mutation p.T407A 0.28 tolerated(0.66) possibly_damaging(0.787) TCGA-CV-7245-01 5 176675284 176675284 G T NSD1 Nonsense_Mutation p.E1534* 0.75 TCGA-CV-7245-01 5 179192840 179192840 G T MAML1 Nonsense_Mutation p.E277* 0.28 TCGA-CV-7245-01 5 23522987 23522987 C A PRDM9 Missense_Mutation p.S292Y 0.11 deleterious(0) possibly_damaging(0.53) TCGA-CV-7245-01 5 2752749 2752749 A T C5orf38 Nonsense_Mutation p.K72* 0.19 TCGA-CV-7245-01 5 33684161 33684161 C A ADAMTS12 Splice_Site p.X212_splice 0.16 TCGA-CV-7245-01 5 33997258 33997258 G T AMACR Intron 0.13 TCGA-CV-7245-01 5 35641597 35641597 C T SPEF2 Nonsense_Mutation p.Q76* 0.10 TCGA-CV-7245-01 5 36253851 36253851 G T RANBP3L Missense_Mutation p.S380R 0.10 deleterious(0) probably_damaging(0.992) TCGA-CV-7245-01 5 37331833 37331833 A - NUP155 Frame_Shift_Del p.V528Gfs*55 0.18 TCGA-CV-7245-01 5 44809461 44809461 C T MRPS30 Missense_Mutation p.P133S 0.10 tolerated(0.46) benign(0.026) TCGA-CV-7245-01 5 44815101 44815101 C T MRPS30 Nonsense_Mutation p.Q373* 0.14 TCGA-CV-7245-01 5 56168720 56168720 A T MAP3K1 Missense_Mutation p.Q525L 0.53 tolerated(0.34) benign(0.052) TCGA-CV-7245-01 5 58147183 58147183 C T RAB3C 3'UTR 0.25 TCGA-CV-7245-01 5 65349325 65349325 G C ERBB2IP Missense_Mutation p.D727H 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.765) TCGA-CV-7245-01 5 68525097 68525097 C A MRPS36 3'UTR 0.61 TCGA-CV-7245-01 5 70835391 70835391 T C BDP1 Silent p.N1979N 0.26 TCGA-CV-7245-01 5 90015959 90015959 G C GPR98 Missense_Mutation p.G3181A 0.25 probably_damaging(0.981) TCGA-CV-7245-01 6 105609578 105609578 C G POPDC3 Missense_Mutation p.W69C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 6 105821390 105821390 C A PREP Missense_Mutation p.W150L 0.23 deleterious(0) probably_damaging(0.997) TCGA-CV-7245-01 6 112457395 112457395 A C LAMA4 Missense_Mutation p.F1115C 0.06 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 6 112486448 112486448 C T LAMA4 Missense_Mutation p.E528K 0.22 tolerated(0.7) benign(0.201) TCGA-CV-7245-01 6 117680986 117680986 G T ROS1 Missense_Mutation p.R1212S 0.43 tolerated(0.83) benign(0.024) TCGA-CV-7245-01 6 121562642 121562642 T A TBC1D32 Silent p.T738T 0.24 TCGA-CV-7245-01 6 123869599 123869599 C G TRDN Missense_Mutation p.G131R 0.30 deleterious_low_confidence(0) unknown(0) TCGA-CV-7245-01 6 133836544 133836544 A T EYA4 Silent p.A529A 0.21 TCGA-CV-7245-01 6 151917620 151917620 A C CCDC170 Missense_Mutation p.K540Q 0.21 deleterious(0) benign(0.379) TCGA-CV-7245-01 6 152443676 152443676 G T SYNE1 Nonsense_Mutation p.C8763* 0.18 TCGA-CV-7245-01 6 152456317 152456317 G T SYNE1 Missense_Mutation p.D8570E 0.41 possibly_damaging(0.692) TCGA-CV-7245-01 6 160557345 160557345 G A SLC22A1 Silent p.K311K 0.34 TCGA-CV-7245-01 6 25670229 25670229 C A SCGN Missense_Mutation p.N132K 0.20 tolerated(0.08) benign(0.231) TCGA-CV-7245-01 6 26156599 26156599 C G HIST1H1E 5'UTR 0.25 TCGA-CV-7245-01 6 26273408 26273408 G A HIST1H2BI Missense_Mutation p.D69N 0.25 deleterious_low_confidence(0.05) benign(0.209) TCGA-CV-7245-01 6 26598238 26598238 G A ABT1 Missense_Mutation p.R113H 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-CV-7245-01 6 27419371 27419371 T A ZNF184 Missense_Mutation p.H656L 0.17 tolerated(0.1) benign(0.217) TCGA-CV-7245-01 6 29524075 29524075 T C UBD Missense_Mutation p.Y27C 0.28 deleterious(0.03) possibly_damaging(0.518) TCGA-CV-7245-01 6 30121714 30121714 G T TRIM10 3'UTR 0.23 TCGA-CV-7245-01 6 31726375 31726375 C A MSH5 Missense_Mutation p.N398K 0.32 deleterious(0.04) probably_damaging(0.948) TCGA-CV-7245-01 6 31854582 31854582 C T EHMT2 Missense_Mutation p.M737I 0.19 deleterious(0.01) benign(0.012) TCGA-CV-7245-01 6 31962428 31962428 C T C4A Nonsense_Mutation p.R916* 0.25 TCGA-CV-7245-01 6 35425701 35425701 G A FANCE Silent p.E303E 0.44 TCGA-CV-7245-01 6 36076281 36076281 G T MAPK14 3'UTR 0.45 TCGA-CV-7245-01 6 39507828 39507828 C A KIF6 Missense_Mutation p.Q532H 0.46 tolerated(0.13) benign(0.003) TCGA-CV-7245-01 6 39841095 39841095 C G DAAM2 Missense_Mutation p.L376V 0.13 tolerated(0.06) possibly_damaging(0.857) TCGA-CV-7245-01 6 41165984 41165984 T C TREML2 Missense_Mutation p.Q80R 0.16 tolerated(0.17) benign(0.318) TCGA-CV-7245-01 6 43013126 43013126 C G CUL7 Silent p.T1043T 0.26 TCGA-CV-7245-01 6 49698934 49698935 - G CRISP3 Frame_Shift_Ins p.Y208Lfs*2 0.09 TCGA-CV-7245-01 6 50803949 50803949 C G TFAP2B Silent p.P259P 0.44 TCGA-CV-7245-01 6 51890545 51890545 G A PKHD1 Missense_Mutation p.P1355S 0.22 tolerated(0.06) benign(0.356) TCGA-CV-7245-01 6 66044978 66044978 C G EYS Missense_Mutation p.C554S 0.29 deleterious(0.01) benign(0.008) TCGA-CV-7245-01 6 7583613 7583613 A G DSP Missense_Mutation p.I2040V 0.49 benign(0.05) TCGA-CV-7245-01 6 75843070 75843070 C A COL12A1 Silent p.V1911V 0.23 TCGA-CV-7245-01 6 82911176 82911176 C G IBTK Missense_Mutation p.G918A 0.42 tolerated(0.12) benign(0) TCGA-CV-7245-01 6 83850121 83850121 A G DOPEY1 Missense_Mutation p.K1805R 0.27 deleterious(0.04) probably_damaging(0.965) TCGA-CV-7245-01 6 89975369 89975369 C A GABRR2 Missense_Mutation p.W284C 0.37 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 6 96651163 96651163 C A FUT9 Silent p.A44A 0.49 TCGA-CV-7245-01 6 97562042 97562042 C T KLHL32 Silent p.S337S 0.17 TCGA-CV-7245-01 7 100677500 100677500 C A MUC17 Missense_Mutation p.P935T 0.19 probably_damaging(0.936) TCGA-CV-7245-01 7 103130227 103130227 G T RELN Missense_Mutation p.T3242K 0.21 tolerated(0.64) benign(0.246) TCGA-CV-7245-01 7 105177012 105177012 G A RINT1 Missense_Mutation p.S30N 0.45 deleterious_low_confidence(0.04) benign(0.001) TCGA-CV-7245-01 7 106508711 106508711 C G PIK3CG Silent p.V235V 0.29 TCGA-CV-7245-01 7 107599899 107599899 C A LAMB1 Missense_Mutation p.V829F 0.23 tolerated(0.15) benign(0.256) TCGA-CV-7245-01 7 11486919 11486919 G T THSD7A Missense_Mutation p.S913Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 7 11676130 11676130 G T THSD7A Silent p.R217R 0.14 TCGA-CV-7245-01 7 122342350 122342350 G A RNF148 Missense_Mutation p.A152V 0.30 tolerated(0.39) benign(0.012) TCGA-CV-7245-01 7 1273324 1273324 G T UNCX Missense_Mutation p.R148L 0.32 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 7 131866875 131866875 C T PLXNA4 Missense_Mutation p.G1078E 0.39 tolerated(0.31) possibly_damaging(0.608) TCGA-CV-7245-01 7 136912730 136912730 T G PTN 3'UTR 0.14 TCGA-CV-7245-01 7 137148340 137148340 T C DGKI Missense_Mutation p.N885S 0.42 tolerated(0.95) benign(0.039) TCGA-CV-7245-01 7 138944065 138944065 A G UBN2 Missense_Mutation p.E285G 0.15 deleterious(0.02) probably_damaging(0.968) TCGA-CV-7245-01 7 140482832 140482832 T G BRAF Silent p.R435R 0.33 TCGA-CV-7245-01 7 142149218 142149218 G T TRBV5-5 Missense_Mutation p.P18Q 0.30 tolerated(0.31) benign(0.079) TCGA-CV-7245-01 7 142231843 142231843 T C TRBV10-1 Missense_Mutation p.Q25R 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 7 142625329 142625329 T C TRPV5 Missense_Mutation p.M255V 0.12 tolerated(0.13) benign(0.035) TCGA-CV-7245-01 7 142640671 142640671 G T KEL Silent p.S535S 0.16 TCGA-CV-7245-01 7 143175187 143175187 C A TAS2R41 Silent p.V74V 0.17 TCGA-CV-7245-01 7 143657334 143657334 G T OR2F1 Missense_Mutation p.A91S 0.20 tolerated(0.54) benign(0) TCGA-CV-7245-01 7 158835786 158835786 C A VIPR2 Missense_Mutation p.K179N 0.24 deleterious(0) probably_damaging(0.995) TCGA-CV-7245-01 7 1937910 1937910 C T MAD1L1 Missense_Mutation p.D642N 0.32 tolerated(0.09) probably_damaging(0.988) TCGA-CV-7245-01 7 28844011 28844011 C T CREB5 Missense_Mutation p.H300Y 0.50 tolerated(1) unknown(0) TCGA-CV-7245-01 7 36397151 36397151 T C KIAA0895 Missense_Mutation p.N76S 0.25 tolerated_low_confidence(0.4) benign(0.009) TCGA-CV-7245-01 7 36895281 36895281 C A ELMO1 Missense_Mutation p.D687Y 0.28 deleterious(0) probably_damaging(0.976) TCGA-CV-7245-01 7 47898472 47898472 C G PKD1L1 Missense_Mutation p.M1387I 0.24 tolerated(0.19) benign(0.013) TCGA-CV-7245-01 7 50514817 50514817 T A FIGNL1 Nonsense_Mutation p.K57* 0.25 TCGA-CV-7245-01 7 62752510 62752510 G T ZNF733P RNA 0.20 TCGA-CV-7245-01 7 63538254 63538254 G C ZNF727 Missense_Mutation p.R276T 0.33 tolerated(0.13) benign(0.09) TCGA-CV-7245-01 7 70853353 70853353 G A WBSCR17 Silent p.K185K 0.39 TCGA-CV-7245-01 7 73638999 73638999 C T LAT2 Missense_Mutation p.P220L 0.50 tolerated(0.4) benign(0.025) TCGA-CV-7245-01 7 80394488 80394488 C G SEMA3C Missense_Mutation p.E476Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-CV-7245-01 7 81388078 81388078 G T HGF Missense_Mutation p.F99L 0.39 tolerated(1) benign(0.003) TCGA-CV-7245-01 7 82784509 82784509 T A PCLO Missense_Mutation p.Q483L 0.27 benign(0.145) TCGA-CV-7245-01 7 86394734 86394734 G C GRM3 Missense_Mutation p.L91F 0.19 deleterious(0) probably_damaging(0.995) TCGA-CV-7245-01 7 91631454 91631454 T G AKAP9 Silent p.L741L 0.16 TCGA-CV-7245-01 7 95668588 95668588 G T DYNC1I1 Splice_Site p.X472_splice 0.16 TCGA-CV-7245-01 8 104054596 104054596 T G ATP6V1C1 Missense_Mutation p.L54W 0.64 deleterious(0) possibly_damaging(0.88) TCGA-CV-7245-01 8 110509197 110509197 T A PKHD1L1 Silent p.G3459G 0.30 TCGA-CV-7245-01 8 113694687 113694687 C T CSMD3 Silent p.L887L 0.28 TCGA-CV-7245-01 8 114111075 114111075 C T CSMD3 Missense_Mutation p.G276E 0.42 tolerated(0.06) probably_damaging(0.99) TCGA-CV-7245-01 8 121290348 121290348 A T COL14A1 Splice_Site p.X1072_splice 0.18 TCGA-CV-7245-01 8 121475942 121475942 A G MTBP Missense_Mutation p.N330D 0.16 tolerated(0.18) benign(0.001) TCGA-CV-7245-01 8 128753114 128753114 G A MYC Silent p.E425E 0.12 TCGA-CV-7245-01 8 13356615 13356615 C T DLC1 Silent p.K322K 0.25 TCGA-CV-7245-01 8 134107379 134107379 T C TG Missense_Mutation p.M2444T 0.53 tolerated(0.89) benign(0) TCGA-CV-7245-01 8 139824102 139824102 T A COL22A1 Silent p.P463P 0.21 TCGA-CV-7245-01 8 142367609 142367609 G A GPR20 Missense_Mutation p.L139F 0.16 deleterious(0.02) probably_damaging(0.951) TCGA-CV-7245-01 8 144996134 144996134 G T PLEC Missense_Mutation p.Q2756K 0.36 benign(0.014) TCGA-CV-7245-01 8 2044190 2044190 G T MYOM2 Silent p.L743L 0.16 TCGA-CV-7245-01 8 21965720 21965720 A T NUDT18 Nonsense_Mutation p.C100* 0.12 TCGA-CV-7245-01 8 29207392 29207392 G A DUSP4 Missense_Mutation p.A135V 0.48 tolerated(0.2) benign(0.067) TCGA-CV-7245-01 8 39682336 39682336 A T ADAM2 Splice_Site p.X89_splice 0.16 TCGA-CV-7245-01 8 39682394 39682394 T A ADAM2 Nonsense_Mutation p.R71* 0.27 TCGA-CV-7245-01 8 39682401 39682401 A T ADAM2 Missense_Mutation p.H68Q 0.28 tolerated(0.59) benign(0.012) TCGA-CV-7245-01 8 51449264 51449264 G T SNTG1 Silent p.P192P 0.22 TCGA-CV-7245-01 8 53045843 53045843 G A ST18 Silent p.C773C 0.17 TCGA-CV-7245-01 8 55538431 55538431 G T RP1 Missense_Mutation p.K663N 0.16 tolerated(0.07) benign(0.004) TCGA-CV-7245-01 8 67357536 67357536 G A ADHFE1 Missense_Mutation p.C146Y 0.22 deleterious(0) probably_damaging(0.971) TCGA-CV-7245-01 8 67705944 67705944 A T SGK3 5'UTR 0.30 TCGA-CV-7245-01 8 86042283 86042283 C A LRRCC1 Missense_Mutation p.Q586K 0.20 deleterious(0.02) benign(0.033) TCGA-CV-7245-01 8 86351950 86351950 A T CA3 Missense_Mutation p.H15L 0.26 tolerated(0.07) benign(0.17) TCGA-CV-7245-01 8 87479236 87479236 C T WWP1 3'UTR 0.08 TCGA-CV-7245-01 9 100070394 100070394 C T CCDC180 Nonsense_Mutation p.Q61* 0.36 TCGA-CV-7245-01 9 104314536 104314536 C G RNF20 Missense_Mutation p.L508V 0.19 tolerated(0.33) benign(0.364) TCGA-CV-7245-01 9 107367190 107367190 G C OR13C2 Missense_Mutation p.T240S 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-7245-01 9 109687822 109687822 G C ZNF462 Silent p.P543P 0.16 TCGA-CV-7245-01 9 109691031 109691031 C T ZNF462 Missense_Mutation p.P1613L 0.15 possibly_damaging(0.657) TCGA-CV-7245-01 9 111735078 111735078 T C CTNNAL1 Silent p.L408L 0.29 TCGA-CV-7245-01 9 115760475 115760475 T C ZNF883 RNA 0.37 TCGA-CV-7245-01 9 120476305 120476305 C T TLR4 Silent p.I633I 0.15 TCGA-CV-7245-01 9 130550933 130550933 G A CDK9 Missense_Mutation p.A239T 0.25 tolerated(1) benign(0.001) TCGA-CV-7245-01 9 136635537 136635537 C A VAV2 Silent p.R770R 0.12 TCGA-CV-7245-01 9 137600429 137600429 A G COL5A1 Intron 0.13 TCGA-CV-7245-01 9 138413308 138413308 C T LCN1 5'UTR 0.13 TCGA-CV-7245-01 9 139290116 139290116 T A SNAPC4 Missense_Mutation p.E95V 0.37 deleterious(0) probably_damaging(0.964) TCGA-CV-7245-01 9 140329398 140329407 CAGCCCCCAC - ENTPD8 Frame_Shift_Del p.V483Pfs*36 0.26 TCGA-CV-7245-01 9 140357226 140357226 C A PNPLA7 Missense_Mutation p.D1135Y 0.35 deleterious(0.02) possibly_damaging(0.477) TCGA-CV-7245-01 9 16437438 16437438 C T BNC2 Missense_Mutation p.G252R 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-7245-01 9 21974763 21974763 G - CDKN2A Frame_Shift_Del p.R22Gfs*4 0.45 TCGA-CV-7245-01 9 26925866 26925866 A G PLAA Missense_Mutation p.C276R 0.65 deleterious(0.03) benign(0.235) TCGA-CV-7245-01 9 32493895 32493895 T G DDX58 Missense_Mutation p.K96T 0.80 tolerated(0.15) benign(0.013) TCGA-CV-7245-01 9 72073080 72073080 T C APBA1 Missense_Mutation p.R503G 0.13 deleterious(0.01) benign(0.39) TCGA-CV-7245-01 9 90321930 90321930 G A DAPK1 Missense_Mutation p.R1315H 0.39 tolerated(0.13) probably_damaging(0.973) TCGA-CV-7245-01 9 90535519 90535519 C A SPATA31C1 RNA 0.39 TCGA-CV-7245-01 9 91262250 91262250 A T RP13-60M5.2 RNA 0.24 TCGA-CV-7245-01 9 91628289 91628289 C A SHC3 3'UTR 0.31 TCGA-CV-7245-01 9 91628290 91628290 A G SHC3 3'UTR 0.31 TCGA-CV-7245-01 X 107978532 107978532 C T IRS4 Missense_Mutation p.G348D 0.29 deleterious(0.04) possibly_damaging(0.706) TCGA-CV-7245-01 X 112054479 112054479 C A AMOT Missense_Mutation p.R512I 0.53 unknown(0) TCGA-CV-7245-01 X 123615699 123615699 C A TENM1 Missense_Mutation p.D1278Y 0.55 deleterious(0) probably_damaging(0.987) TCGA-CV-7245-01 X 125299776 125299776 C T DCAF12L2 Silent p.R44R 0.94 TCGA-CV-7245-01 X 128926745 128926745 G C SASH3 Missense_Mutation p.R245P 0.85 tolerated(0.35) benign(0.111) TCGA-CV-7245-01 X 129149304 129149304 G T BCORL1 Silent p.L852L 0.74 TCGA-CV-7245-01 X 140984215 140984215 A G MAGEC3 Intron 0.52 TCGA-CV-7245-01 X 142716919 142716919 C T SLITRK4 Missense_Mutation p.R669K 0.22 tolerated(0.71) benign(0.197) TCGA-CV-7245-01 X 150912139 150912139 G T CNGA2 Missense_Mutation p.K388N 0.18 tolerated(0.18) possibly_damaging(0.448) TCGA-CV-7245-01 X 30261232 30261232 C T MAGEB4 Missense_Mutation p.T327I 0.17 tolerated(0.26) unknown(0) TCGA-CV-7245-01 X 55479543 55479543 G A MAGEH1 3'UTR 0.65 TCGA-CV-7245-01 X 64959704 64959704 G T MSN Missense_Mutation p.Q561H 0.48 deleterious(0) probably_damaging(0.994) TCGA-CV-7245-01 X 69502178 69502178 G T RAB41 Silent p.L37L 0.57 TCGA-CV-7245-01 X 78011270 78011270 C A LPAR4 Missense_Mutation p.L302M 0.64 tolerated(0.22) benign(0.1) TCGA-CV-7245-01 X 88009299 88009299 C A CPXCR1 Nonsense_Mutation p.S295* 0.89 TCGA-CV-7245-01 X 96396710 96396710 T C DIAPH2 Missense_Mutation p.F879S 0.37 deleterious(0) probably_damaging(1) TCGA-CV-7245-01 X 99551562 99551562 C G PCDH19 Missense_Mutation p.E1054Q 0.52 deleterious_low_confidence(0.02) probably_damaging(0.925) TCGA-CV-7245-01 X 99551615 99551615 T - PCDH19 Frame_Shift_Del p.K1036Rfs*6 0.36 TCGA-CV-7247-01 10 104210810 104210810 C T C10orf95 Missense_Mutation p.G60S 0.30 tolerated_low_confidence(0.05) probably_damaging(0.931) TCGA-CV-7247-01 10 93602105 93602105 C T TNKS2 Silent p.C672C 0.08 TCGA-CV-7247-01 10 95386572 95386572 G T PDE6C Missense_Mutation p.A339S 0.12 tolerated(0.27) benign(0.392) TCGA-CV-7247-01 11 10821256 10821260 CCTTT - EIF4G2 Frame_Shift_Del p.K722Tfs*29 0.25 TCGA-CV-7247-01 11 55032644 55032644 G A TRIM48 Missense_Mutation p.E105K 0.11 deleterious(0.05) benign(0.381) TCGA-CV-7247-01 11 55433284 55433284 G A OR4C6 Silent p.A214A 0.25 TCGA-CV-7247-01 11 61124072 61124072 A T CYB561A3 Missense_Mutation p.N55K 0.20 deleterious(0) benign(0.117) TCGA-CV-7247-01 11 61124075 61124075 C A CYB561A3 Missense_Mutation p.W54C 0.18 deleterious(0) probably_damaging(0.983) TCGA-CV-7247-01 11 8414255 8414255 A C STK33 Silent p.S449S 0.36 TCGA-CV-7247-01 12 113537802 113537802 C A RASAL1 Missense_Mutation p.D785Y 0.27 deleterious(0) possibly_damaging(0.747) TCGA-CV-7247-01 12 12022466 12022466 G A ETV6 Missense_Mutation p.R191Q 0.14 tolerated(0.1) benign(0.009) TCGA-CV-7247-01 12 20832977 20832977 C G PDE3A Missense_Mutation p.F1066L 0.11 tolerated(0.65) benign(0.004) TCGA-CV-7247-01 12 21967641 21967641 G A ABCC9 Missense_Mutation p.R1347C 0.15 deleterious(0) probably_damaging(0.991) TCGA-CV-7247-01 12 2224421 2224421 T A CACNA1C Missense_Mutation p.H27Q 0.40 tolerated_low_confidence(0.2) benign(0.053) TCGA-CV-7247-01 12 56717351 56717351 T - PAN2 Frame_Shift_Del p.D739Vfs*9 0.24 TCGA-CV-7247-01 13 100861712 100861712 G A PCCA Missense_Mutation p.V199I 0.13 tolerated(1) benign(0.079) TCGA-CV-7247-01 14 31597034 31597034 G - HECTD1 Frame_Shift_Del p.S1647Vfs*59 0.15 TCGA-CV-7247-01 15 75641409 75641409 G A NEIL1 Missense_Mutation p.E55K 0.07 deleterious(0) probably_damaging(1) TCGA-CV-7247-01 15 79750590 79750590 A T KIAA1024 Nonsense_Mutation p.K701* 0.10 TCGA-CV-7247-01 16 2159543 2159543 G C PKD1 Silent p.V1875V 0.38 TCGA-CV-7247-01 16 5127458 5127458 C A ALG1 Missense_Mutation p.F184L 0.15 tolerated(1) benign(0.002) TCGA-CV-7247-01 16 57765196 57765196 G A CCDC135 3'UTR 0.16 TCGA-CV-7247-01 16 70064946 70064946 C A MIR1972-2 3'Flank 0.23 TCGA-CV-7247-01 17 10447033 10447033 G A MYH2 Missense_Mutation p.R246C 0.10 deleterious(0) possibly_damaging(0.473) TCGA-CV-7247-01 17 19576582 19576582 G A ALDH3A2 3'UTR 0.11 TCGA-CV-7247-01 17 38552685 38552685 T G TOP2A Missense_Mutation p.Q1190H 0.09 tolerated(0.11) possibly_damaging(0.497) TCGA-CV-7247-01 17 53158448 53158448 A C STXBP4 Missense_Mutation p.T465P 0.07 tolerated(0.39) benign(0.001) TCGA-CV-7247-01 17 61781730 61781730 C A STRADA Missense_Mutation p.E357D 0.16 deleterious(0.02) possibly_damaging(0.778) TCGA-CV-7247-01 17 63526139 63526139 C T AXIN2 Silent p.P829P 0.14 TCGA-CV-7247-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.52 deleterious(0) probably_damaging(1) TCGA-CV-7247-01 17 80013938 80013938 G A GPS1 Missense_Mutation p.R339Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-7247-01 18 50977000 50977000 T G DCC Missense_Mutation p.I1120M 0.11 deleterious(0.01) possibly_damaging(0.851) TCGA-CV-7247-01 18 7043287 7043287 A C LAMA1 Missense_Mutation p.L365W 0.29 deleterious(0.02) possibly_damaging(0.84) TCGA-CV-7247-01 19 11832973 11832973 T G ZNF823 Missense_Mutation p.Q459P 0.05 deleterious(0.01) probably_damaging(0.985) TCGA-CV-7247-01 19 11943494 11943494 T - ZNF440 Frame_Shift_Del p.F502Lfs*4 0.17 TCGA-CV-7247-01 19 19334919 19334919 A G NCAN Missense_Mutation p.I189V 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-CV-7247-01 19 19655256 19655256 G A CILP2 Silent p.L634L 0.06 TCGA-CV-7247-01 19 2121250 2121250 C T AP3D1 Missense_Mutation p.E388K 0.08 deleterious(0) possibly_damaging(0.729) TCGA-CV-7247-01 19 43259212 43259212 C T PSG8 Missense_Mutation p.G306R 0.18 deleterious(0) probably_damaging(1) TCGA-CV-7247-01 1 1573143 1573143 G T CDK11B Missense_Mutation p.P485H 0.08 unknown(0) TCGA-CV-7247-01 1 161140306 161140306 G A PPOX Silent p.V365V 0.13 TCGA-CV-7247-01 1 176563958 176563958 G T PAPPA2 Missense_Mutation p.L406F 0.35 tolerated(0.1) benign(0.358) TCGA-CV-7247-01 1 216380633 216380633 C G USH2A Missense_Mutation p.E1100Q 0.15 benign(0.04) TCGA-CV-7247-01 1 236760193 236760193 T C HEATR1 Silent p.V229V 0.12 TCGA-CV-7247-01 1 247978414 247978414 G A OR14A16 Silent p.F206F 0.07 TCGA-CV-7247-01 1 248814121 248814121 C T OR2T27 Missense_Mutation p.R22H 0.13 tolerated(0.1) benign(0.001) TCGA-CV-7247-01 1 25944781 25944781 C T MAN1C1 Nonsense_Mutation p.Q165* 0.25 TCGA-CV-7247-01 1 27087340 27087345 GTTCTA ATCTT ARID1A Splice_Site p.X641_splice 0.16 TCGA-CV-7247-01 1 28906300 28906300 C A TRNAU1AP 3'Flank 0.24 TCGA-CV-7247-01 1 3397090 3397090 G A ARHGEF16 Missense_Mutation p.R690H 0.11 deleterious(0.03) possibly_damaging(0.781) TCGA-CV-7247-01 1 54562226 54562226 G C TCEANC2 3'UTR 0.46 TCGA-CV-7247-01 1 57140142 57140142 A C PRKAA2 Silent p.I61I 0.23 TCGA-CV-7247-01 1 78194375 78194375 C T USP33 Missense_Mutation p.C278Y 0.35 deleterious(0.04) probably_damaging(0.996) TCGA-CV-7247-01 22 31491537 31491537 C A SMTN Missense_Mutation p.D601E 0.28 deleterious(0.02) possibly_damaging(0.859) TCGA-CV-7247-01 22 41919936 41919936 G A ACO2 Silent p.T491T 0.21 TCGA-CV-7247-01 2 135965229 135965229 C T ZRANB3 Silent p.A928A 0.12 TCGA-CV-7247-01 2 136545684 136545684 A G LCT 3'UTR 0.64 TCGA-CV-7247-01 2 169020294 169020294 A C STK39 Missense_Mutation p.V176G 0.09 deleterious(0.01) probably_damaging(1) TCGA-CV-7247-01 2 182414397 182414397 G A CERKL Missense_Mutation p.P313S 0.12 tolerated(0.87) benign(0.006) TCGA-CV-7247-01 2 37284598 37284598 T G HEATR5B Missense_Mutation p.E695D 0.20 deleterious(0.02) benign(0.221) TCGA-CV-7247-01 2 80816531 80816531 T G CTNNA2 Missense_Mutation p.W704G 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7247-01 3 113378750 113378750 G C KIAA2018 Silent p.L593L 0.31 TCGA-CV-7247-01 3 133538447 133538447 C A SRPRB Missense_Mutation p.S218Y 0.10 deleterious(0) benign(0.217) TCGA-CV-7247-01 3 140167413 140167413 C - CLSTN2 Frame_Shift_Del p.S282Afs*73 0.27 TCGA-CV-7247-01 3 183754191 183754191 G T HTR3D Missense_Mutation p.A137S 0.41 tolerated(0.07) possibly_damaging(0.733) TCGA-CV-7247-01 3 191179054 191179054 C A PYDC2 Missense_Mutation p.L35M 0.08 tolerated(0.08) probably_damaging(0.992) TCGA-CV-7247-01 5 140432406 140432406 A T PCDHB1 Missense_Mutation p.I451L 0.13 tolerated(0.09) benign(0) TCGA-CV-7247-01 6 167721317 167721317 C T UNC93A Missense_Mutation p.R343C 0.08 deleterious(0.02) possibly_damaging(0.462) TCGA-CV-7247-01 6 26199851 26199851 C T HIST1H2BF Missense_Mutation p.A22V 0.16 tolerated_low_confidence(0.12) unknown(0) TCGA-CV-7247-01 6 80878708 80878708 G A BCKDHB Silent p.Q198Q 0.08 TCGA-CV-7247-01 6 83834513 83834513 A T DOPEY1 Missense_Mutation p.D477V 0.31 tolerated(0.58) possibly_damaging(0.864) TCGA-CV-7247-01 7 100483362 100483362 C T SRRT Missense_Mutation p.S453L 0.15 deleterious(0.01) probably_damaging(0.95) TCGA-CV-7247-01 7 11468652 11468652 C G THSD7A Silent p.V1055V 0.05 TCGA-CV-7247-01 7 129948151 129948151 G T CPA4 Missense_Mutation p.R236L 0.27 deleterious(0) probably_damaging(0.997) TCGA-CV-7247-01 7 38356883 38356883 G A TRGV9 Missense_Mutation p.T34M 0.11 tolerated(0.12) benign(0.137) TCGA-CV-7247-01 7 38402707 38402707 C T TRGV2 Missense_Mutation p.E38K 0.06 tolerated(0.2) benign(0.108) TCGA-CV-7247-01 8 59059406 59059406 T C FAM110B Missense_Mutation p.V206A 0.13 tolerated(0.09) benign(0.001) TCGA-CV-7247-01 8 70536227 70536227 G A SULF1 Missense_Mutation p.E549K 0.14 tolerated(0.09) benign(0.036) TCGA-CV-7247-01 8 97318687 97318687 A - PTDSS1 Frame_Shift_Del p.T304Pfs*4 0.29 TCGA-CV-7247-01 9 27220088 27220088 G A TEK Missense_Mutation p.E1049K 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-7247-01 9 95236914 95236914 G C ASPN Nonsense_Mutation p.S89* 0.12 TCGA-CV-7247-01 X 12734913 12734913 G A FRMPD4 Missense_Mutation p.D779N 0.08 tolerated(0.14) probably_damaging(1) TCGA-CV-7247-01 X 134495086 134495086 G A ZNF449 3'UTR 0.24 TCGA-CV-7247-01 X 30738152 30738152 C T GK Silent p.F386F 0.10 TCGA-CV-7247-01 X 48629492 48629492 C T GLOD5 Silent p.H117H 0.62 TCGA-CV-7248-01 10 108389130 108389130 G C SORCS1 Missense_Mutation p.T831R 0.18 deleterious(0) probably_damaging(0.94) TCGA-CV-7248-01 10 112771592 112771592 C T SHOC2 3'UTR 0.18 TCGA-CV-7248-01 10 114045943 114045943 T A TECTB Missense_Mutation p.L128M 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-7248-01 10 129903439 129903439 C A MKI67 Missense_Mutation p.R2222I 0.15 tolerated(0.13) benign(0.016) TCGA-CV-7248-01 10 129906870 129906870 T A MKI67 Silent p.P1078P 0.11 TCGA-CV-7248-01 10 135438829 135438829 C A FRG2B Missense_Mutation p.C204F 0.11 tolerated(0.09) benign(0.023) TCGA-CV-7248-01 10 17865310 17865310 G A MRC1L1 Nonsense_Mutation p.W100* 0.18 TCGA-CV-7248-01 10 84745309 84745309 C T NRG3 Missense_Mutation p.A680V 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.503) TCGA-CV-7248-01 10 87487719 87487719 T G GRID1 Missense_Mutation p.K476Q 0.13 tolerated(0.06) possibly_damaging(0.832) TCGA-CV-7248-01 10 94834702 94834702 T A CYP26A1 Missense_Mutation p.L194Q 0.12 deleterious(0.03) probably_damaging(0.952) TCGA-CV-7248-01 10 95360773 95360773 A G RBP4 Missense_Mutation p.W5R 0.11 tolerated(0.35) probably_damaging(0.996) TCGA-CV-7248-01 10 98743264 98743264 C T C10orf12 Missense_Mutation p.S706L 0.19 tolerated(0.1) benign(0.123) TCGA-CV-7248-01 11 113683178 113683178 C A USP28 Missense_Mutation p.A598S 0.23 tolerated(0.12) possibly_damaging(0.764) TCGA-CV-7248-01 11 130319057 130319057 C T ADAMTS15 Silent p.D63D 0.11 TCGA-CV-7248-01 11 133715038 133715038 C A SPATA19 Missense_Mutation p.W42C 0.14 deleterious(0) probably_damaging(0.95) TCGA-CV-7248-01 11 16847840 16847840 C T PLEKHA7 Silent p.R390R 0.29 TCGA-CV-7248-01 11 18134287 18134287 G T SAA3P RNA 0.25 TCGA-CV-7248-01 11 18451424 18451424 C A LDHC Missense_Mutation p.P129T 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7248-01 11 18451425 18451425 C A LDHC Missense_Mutation p.P129H 0.13 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 11 55432837 55432837 C A OR4C6 Silent p.S65S 0.17 TCGA-CV-7248-01 11 55595555 55595555 C A OR5L2 Silent p.P287P 0.18 TCGA-CV-7248-01 11 55860982 55860982 G T OR8I2 Missense_Mutation p.A67S 0.17 tolerated(1) probably_damaging(0.996) TCGA-CV-7248-01 11 57175325 57175325 G A SLC43A3 Silent p.H472H 0.28 TCGA-CV-7248-01 11 5968817 5968817 G T OR56A3 Missense_Mutation p.V81F 0.21 deleterious(0) possibly_damaging(0.834) TCGA-CV-7248-01 11 60269478 60269478 C T MS4A12 Missense_Mutation p.S146F 0.15 deleterious(0) probably_damaging(0.93) TCGA-CV-7248-01 11 62297865 62297865 C A AHNAK Missense_Mutation p.D1342Y 0.19 probably_damaging(0.978) TCGA-CV-7248-01 11 65623195 65623195 G T CFL1 Silent p.P106P 0.15 TCGA-CV-7248-01 11 65634509 65634509 C A EFEMP2 Silent p.P404P 0.21 TCGA-CV-7248-01 11 66411238 66411238 T C RBM14-RBM4 Missense_Mutation p.Y219H 0.20 deleterious(0.04) unknown(0) TCGA-CV-7248-01 11 82644765 82644765 T A C11orf82 Silent p.P795P 0.21 TCGA-CV-7248-01 12 105446604 105446604 G T ALDH1L2 Missense_Mutation p.P465T 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-CV-7248-01 12 112528566 112528566 G C NAA25 Missense_Mutation p.Q83E 0.23 deleterious(0) possibly_damaging(0.872) TCGA-CV-7248-01 12 11546523 11546523 G T PRB2 Silent p.P163P 0.10 TCGA-CV-7248-01 12 121093779 121093779 C T CABP1 Intron 0.33 TCGA-CV-7248-01 12 21991070 21991070 G A ABCC9 Missense_Mutation p.P1170S 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 12 333259 333259 C T SLC6A13 Missense_Mutation p.D404N 0.13 deleterious(0.01) possibly_damaging(0.656) TCGA-CV-7248-01 12 40740560 40740560 C T LRRK2 Missense_Mutation p.R2039C 0.13 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 12 49424105 49424105 T A KMT2D Nonsense_Mutation p.K4653* 0.31 TCGA-CV-7248-01 12 50367220 50367220 C T AQP6 Silent p.A88A 0.19 TCGA-CV-7248-01 12 50594639 50594639 A G LIMA1 Missense_Mutation p.I298T 0.19 tolerated(0.14) benign(0.03) TCGA-CV-7248-01 12 55615641 55615641 A G OR10A7 Missense_Mutation p.Y278C 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 12 56600268 56600268 A C RNF41 Missense_Mutation p.L306R 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 12 6729716 6729716 C T LPAR5 Silent p.V233V 0.44 TCGA-CV-7248-01 12 8192621 8192621 G T FOXJ2 Missense_Mutation p.G65C 0.20 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 12 97885730 97885732 GCT AA MIR1251 RNA 0.27 TCGA-CV-7248-01 13 102231768 102231768 C A ITGBL1 Nonsense_Mutation p.C239* 0.20 TCGA-CV-7248-01 13 109707435 109707435 G A MYO16 Silent p.L1008L 0.20 TCGA-CV-7248-01 13 112722188 112722188 G T SOX1 Missense_Mutation p.E72D 0.15 deleterious(0.03) possibly_damaging(0.808) TCGA-CV-7248-01 13 29007977 29007977 C T FLT1 Missense_Mutation p.M264I 0.19 tolerated(0.56) benign(0.02) TCGA-CV-7248-01 13 47279253 47279253 G A LRCH1 Missense_Mutation p.G484E 0.14 tolerated(1) benign(0.001) TCGA-CV-7248-01 13 53036054 53036054 G T CKAP2 Nonsense_Mutation p.E366* 0.34 TCGA-CV-7248-01 14 101349302 101349302 G T RTL1 Nonsense_Mutation p.Y608* 0.19 TCGA-CV-7248-01 14 21771560 21771560 A T RPGRIP1 Missense_Mutation p.M220L 0.29 tolerated(0.33) benign(0.001) TCGA-CV-7248-01 14 24736904 24736904 C T RABGGTA Missense_Mutation p.E439K 0.18 deleterious(0.03) probably_damaging(0.918) TCGA-CV-7248-01 14 30135391 30135391 G C PRKD1 Missense_Mutation p.Q143E 0.23 tolerated(0.24) possibly_damaging(0.65) TCGA-CV-7248-01 14 45644719 45644719 G T FANCM Missense_Mutation p.C921F 0.11 tolerated(0.68) benign(0.016) TCGA-CV-7248-01 14 52520359 52520359 G A NID2 Missense_Mutation p.T456I 0.23 tolerated(0.22) benign(0.002) TCGA-CV-7248-01 14 59112196 59112196 T C DACT1 Silent p.L285L 0.14 TCGA-CV-7248-01 14 60097374 60097374 G T RTN1 Intron 0.31 TCGA-CV-7248-01 14 62547851 62547851 T C SYT16 Silent p.C431C 0.21 TCGA-CV-7248-01 14 94640869 94640869 G A PPP4R4 Missense_Mutation p.D23N 0.34 tolerated(0.07) possibly_damaging(0.507) TCGA-CV-7248-01 15 20495403 20495403 G T CHEK2P2 RNA 0.10 TCGA-CV-7248-01 15 20657702 20657702 G T HERC2P3 RNA 0.57 TCGA-CV-7248-01 15 22369359 22369359 C G OR4M2 Missense_Mutation p.R262G 0.04 deleterious(0.01) possibly_damaging(0.802) TCGA-CV-7248-01 15 25222051 25222051 G T SNRPN Nonsense_Mutation p.G99* 0.15 TCGA-CV-7248-01 15 25222052 25222052 G T SNRPN Missense_Mutation p.G99V 0.17 deleterious(0.04) possibly_damaging(0.625) TCGA-CV-7248-01 15 25307570 25307570 G A SNORD116-5 RNA 0.12 TCGA-CV-7248-01 15 53050034 53050034 C T ONECUT1 Silent p.R372R 0.14 TCGA-CV-7248-01 15 54847645 54847645 G T UNC13C Nonsense_Mutation p.E1965* 0.11 TCGA-CV-7248-01 15 55657499 55657499 G A CCPG1 Nonsense_Mutation p.Q239* 0.17 TCGA-CV-7248-01 15 62217667 62217667 T G VPS13C Missense_Mutation p.E2199D 0.38 tolerated(0.25) possibly_damaging(0.885) TCGA-CV-7248-01 15 79748907 79748907 G A KIAA1024 Missense_Mutation p.E140K 0.10 tolerated(0.24) benign(0.037) TCGA-CV-7248-01 15 89417692 89417692 C A ACAN Missense_Mutation p.R2525S 0.22 tolerated(0.06) possibly_damaging(0.871) TCGA-CV-7248-01 16 58612676 58612676 G C CNOT1 Missense_Mutation p.S504C 0.11 tolerated(0.07) benign(0.025) TCGA-CV-7248-01 16 68395622 68395622 A T SMPD3 Missense_Mutation p.F584I 0.24 tolerated(0.36) possibly_damaging(0.648) TCGA-CV-7248-01 16 72188257 72188257 T A PMFBP1 Missense_Mutation p.K89N 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 16 81236234 81236234 G A PKD1L2 Silent p.T338T 0.24 TCGA-CV-7248-01 17 10305003 10305003 C G MYH8 Missense_Mutation p.E930Q 0.12 deleterious(0) possibly_damaging(0.752) TCGA-CV-7248-01 17 14683358 14683358 C T AC005863.1 RNA 0.12 TCGA-CV-7248-01 17 21730888 21730888 G A UBBP4 Missense_Mutation p.E64K 0.22 tolerated(0.11) benign(0.312) TCGA-CV-7248-01 17 31439077 31439077 T C ASIC2 Silent p.T239T 0.16 TCGA-CV-7248-01 17 34050756 34050756 G T AP2B1 3'UTR 0.20 TCGA-CV-7248-01 17 34263770 34263770 C - LYZL6 Frame_Shift_Del p.M123* 0.17 TCGA-CV-7248-01 17 35298160 35298160 C A LHX1 Silent p.T217T 0.21 TCGA-CV-7248-01 17 41245558 41245558 T C BRCA1 Missense_Mutation p.R664G 0.14 deleterious(0) possibly_damaging(0.457) TCGA-CV-7248-01 17 61791420 61791420 C - STRADA Frame_Shift_Del p.V58Sfs*2 0.17 TCGA-CV-7248-01 17 61949398 61949398 G T CSH2 3'UTR 0.25 TCGA-CV-7248-01 17 61949399 61949399 G T CSH2 3'UTR 0.25 TCGA-CV-7248-01 17 72846860 72846860 C G GRIN2C Missense_Mutation p.W387S 0.29 deleterious(0.01) probably_damaging(0.938) TCGA-CV-7248-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.39 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 18 64178851 64178851 A T CDH19 Silent p.S510S 0.23 TCGA-CV-7248-01 18 64202257 64202257 A T CDH19 Silent p.A434A 0.17 TCGA-CV-7248-01 18 67266726 67266726 G T DOK6 Missense_Mutation p.C94F 0.20 deleterious(0) possibly_damaging(0.643) TCGA-CV-7248-01 18 7949203 7949203 C T PTPRM Silent p.L230L 0.14 TCGA-CV-7248-01 19 10602622 10602622 C A KEAP1 Missense_Mutation p.C319F 0.27 tolerated(0.24) benign(0.133) TCGA-CV-7248-01 19 1080953 1080953 G A HMHA1 Missense_Mutation p.E710K 0.12 deleterious(0.03) benign(0.066) TCGA-CV-7248-01 19 11527319 11527319 C T RGL3 Missense_Mutation p.V132I 0.18 tolerated(0.22) benign(0.268) TCGA-CV-7248-01 19 21324881 21324881 C T ZNF431 5'UTR 0.24 TCGA-CV-7248-01 19 22271482 22271482 T A ZNF257 Missense_Mutation p.H310Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-CV-7248-01 19 22785437 22785437 G T AC011467.1 5'Flank 0.09 TCGA-CV-7248-01 19 22952031 22952031 C G ZNF99 Missense_Mutation p.M33I 0.08 tolerated(0.05) possibly_damaging(0.892) TCGA-CV-7248-01 19 39390156 39390156 T C SIRT2 Silent p.A2A 0.25 TCGA-CV-7248-01 19 39936475 39936475 G T SUPT5H 5'UTR 0.37 TCGA-CV-7248-01 19 42860263 42860263 G A MEGF8 Missense_Mutation p.G1407D 0.39 deleterious(0.04) probably_damaging(0.993) TCGA-CV-7248-01 19 43371230 43371230 G C PSG1 3'Flank 0.18 TCGA-CV-7248-01 19 43439857 43439857 T C PSG7 Silent p.P43P 0.13 TCGA-CV-7248-01 19 47863303 47863303 G T DHX34 Missense_Mutation p.G451W 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 19 48337742 48337742 C T TPRX2P Silent p.N14N 0.23 TCGA-CV-7248-01 19 48785741 48785741 C T ZNF114 Silent p.N41N 0.10 TCGA-CV-7248-01 19 49377451 49377451 G A PPP1R15A Missense_Mutation p.E321K 0.18 tolerated(0.16) possibly_damaging(0.899) TCGA-CV-7248-01 19 51581171 51581171 G A KLK14 3'UTR 0.22 TCGA-CV-7248-01 19 52496489 52496489 G T ZNF615 Missense_Mutation p.H625N 0.12 deleterious(0) probably_damaging(0.997) TCGA-CV-7248-01 19 52919017 52919017 G T ZNF528 Missense_Mutation p.K304N 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 19 54314216 54314216 C A NLRP12 Missense_Mutation p.D233Y 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 19 54314237 54314237 G C NLRP12 Missense_Mutation p.L226V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7248-01 19 54403990 54403990 A G PRKCG Missense_Mutation p.Y521C 0.20 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 19 55538970 55538970 C A GP6 Missense_Mutation p.D196Y 0.06 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-CV-7248-01 19 6746509 6746509 G A TRIP10 Missense_Mutation p.R344Q 0.12 deleterious(0) probably_damaging(0.973) TCGA-CV-7248-01 19 7506611 7506611 G T ARHGEF18 Silent p.L205L 0.22 TCGA-CV-7248-01 19 9010683 9010683 G C MUC16 Missense_Mutation p.T12993S 0.19 possibly_damaging(0.734) TCGA-CV-7248-01 1 111217039 111217039 G T KCNA3 Silent p.G131G 0.09 TCGA-CV-7248-01 1 1203232 1203232 G A UBE2J2 Intron 0.11 TCGA-CV-7248-01 1 150529140 150529140 G A ADAMTSL4 Nonsense_Mutation p.W540* 0.10 TCGA-CV-7248-01 1 152191468 152191468 G T HRNR Silent p.G879G 0.35 TCGA-CV-7248-01 1 156376852 156376852 A C C1orf61 Intron 0.33 TCGA-CV-7248-01 1 158583633 158583633 C G SPTA1 Silent p.G2289G 0.34 TCGA-CV-7248-01 1 158669539 158669539 T A OR6K2 Missense_Mutation p.I302L 0.31 tolerated(0.61) benign(0.021) TCGA-CV-7248-01 1 183387391 183387391 G C NMNAT2 Silent p.T4T 0.34 TCGA-CV-7248-01 1 197898131 197898131 G C LHX9 Splice_Site p.X313_splice 0.48 TCGA-CV-7248-01 1 20246801 20246801 C T PLA2G2E Silent p.%3D 0.21 TCGA-CV-7248-01 1 207078209 207078209 C G FAIM3 3'UTR 0.40 TCGA-CV-7248-01 1 23850945 23850945 C G E2F2 Missense_Mutation p.R96S 0.14 deleterious(0.03) benign(0.066) TCGA-CV-7248-01 1 247695829 247695829 G T OR2C3 5'UTR 0.31 TCGA-CV-7248-01 1 248084677 248084677 C A OR2T8 Missense_Mutation p.R120S 0.17 deleterious(0) probably_damaging(0.932) TCGA-CV-7248-01 1 248262829 248262829 A G OR2L13 Missense_Mutation p.D51G 0.04 deleterious(0) probably_damaging(0.976) TCGA-CV-7248-01 1 248436759 248436759 G T OR2T33 Missense_Mutation p.R120S 0.18 deleterious(0) probably_damaging(0.932) TCGA-CV-7248-01 1 25228965 25228965 G T RUNX3 Missense_Mutation p.A313D 0.17 deleterious(0.03) benign(0.196) TCGA-CV-7248-01 1 29064131 29064131 G C YTHDF2 Intron 0.12 TCGA-CV-7248-01 1 40928732 40928732 G A ZFP69B Missense_Mutation p.G359E 0.12 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 1 57395028 57395028 T G C8B 3'UTR 0.09 TCGA-CV-7248-01 1 71477812 71477812 G C PTGER3 Intron 0.15 TCGA-CV-7248-01 1 74507088 74507088 G T LRRIQ3 Silent p.S509S 0.07 TCGA-CV-7248-01 1 74507545 74507545 G T LRRIQ3 Missense_Mutation p.P357H 0.09 deleterious(0) possibly_damaging(0.849) TCGA-CV-7248-01 1 78098771 78098771 G A ZZZ3 Missense_Mutation p.S90F 0.10 tolerated(0.06) benign(0.007) TCGA-CV-7248-01 1 79470764 79470764 T A ELTD1 Missense_Mutation p.I55F 0.08 tolerated_low_confidence(0.67) benign(0.001) TCGA-CV-7248-01 1 86289270 86289270 G T COL24A1 Silent p.G1246G 0.08 TCGA-CV-7248-01 20 21346226 21346226 A T XRN2 Silent p.V780V 0.22 TCGA-CV-7248-01 20 42695453 42695453 G T TOX2 Missense_Mutation p.W480C 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-7248-01 20 42935681 42935681 G A FITM2 Missense_Mutation p.P125S 0.13 tolerated(0.44) benign(0.01) TCGA-CV-7248-01 20 44313466 44313466 C T WFDC10B 3'UTR 0.24 TCGA-CV-7248-01 20 476380 476380 C G CSNK2A1 Missense_Mutation p.D165H 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 21 34029187 34029187 C T SYNJ1 Missense_Mutation p.D908N 0.14 deleterious(0.04) probably_damaging(0.994) TCGA-CV-7248-01 21 47773909 47773909 G A PCNT Missense_Mutation p.C563Y 0.27 benign(0.188) TCGA-CV-7248-01 21 47931456 47931456 C T DIP2A Missense_Mutation p.T344I 0.17 deleterious(0.04) possibly_damaging(0.643) TCGA-CV-7248-01 22 22868532 22868532 G C ZNF280A Missense_Mutation p.Q475E 0.25 deleterious(0.01) possibly_damaging(0.606) TCGA-CV-7248-01 22 32479071 32479071 G A SLC5A1 Silent p.A198A 0.12 TCGA-CV-7248-01 22 32587270 32587270 C A RFPL2 Missense_Mutation p.R209L 0.19 tolerated(0.05) benign(0.104) TCGA-CV-7248-01 22 46790128 46790128 C A CELSR1 Missense_Mutation p.G1959W 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 2 103136343 103136343 A G SLC9A4 Missense_Mutation p.R583G 0.30 tolerated(0.16) benign(0.092) TCGA-CV-7248-01 2 128937402 128937402 G C UGGT1 Silent p.V1286V 0.15 TCGA-CV-7248-01 2 133541907 133541907 G - NCKAP5 Frame_Shift_Del p.P826Lfs*6 0.15 TCGA-CV-7248-01 2 145156365 145156365 G T ZEB2 Missense_Mutation p.H797N 0.11 tolerated(0.07) benign(0.428) TCGA-CV-7248-01 2 145156366 145156366 G T ZEB2 Silent p.S796S 0.12 TCGA-CV-7248-01 2 163695000 163695000 G T KCNH7 Missense_Mutation p.P10Q 0.21 deleterious(0.04) probably_damaging(0.982) TCGA-CV-7248-01 2 167279890 167279890 T G SCN7A Missense_Mutation p.E969A 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7248-01 2 167301445 167301445 A T SCN7A Missense_Mutation p.W485R 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 2 179423146 179423146 G T TTN Silent p.R29014R 0.24 TCGA-CV-7248-01 2 179423147 179423147 G T TTN Missense_Mutation p.F29013L 0.24 TCGA-CV-7248-01 2 179431634 179431634 G T TTN Missense_Mutation p.R26409S 0.25 TCGA-CV-7248-01 2 179483207 179483207 G T TTN Missense_Mutation p.P15660T 0.24 TCGA-CV-7248-01 2 179585700 179585700 C A TTN Missense_Mutation p.E7682D 0.10 TCGA-CV-7248-01 2 185803441 185803441 C T ZNF804A Silent p.H1106H 0.13 TCGA-CV-7248-01 2 187702117 187702117 G T ZSWIM2 Missense_Mutation p.A220E 0.29 deleterious(0.02) benign(0.209) TCGA-CV-7248-01 2 187703819 187703819 G T ZSWIM2 Missense_Mutation p.P121T 0.17 tolerated(0.24) benign(0.003) TCGA-CV-7248-01 2 190718963 190718963 A G PMS1 Splice_Site p.X323_splice 0.11 TCGA-CV-7248-01 2 196825534 196825534 T C DNAH7 Missense_Mutation p.R781G 0.21 deleterious(0.01) benign(0.065) TCGA-CV-7248-01 2 209207340 209207340 A G PIKFYVE Missense_Mutation p.K1665R 0.15 tolerated(0.57) benign(0.001) TCGA-CV-7248-01 2 210559961 210559961 C T MAP2 Missense_Mutation p.P1023S 0.13 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-CV-7248-01 2 215880266 215880266 A T ABCA12 Missense_Mutation p.L635H 0.17 tolerated(0.16) possibly_damaging(0.75) TCGA-CV-7248-01 2 238242141 238242141 T C COL6A3 Missense_Mutation p.T3094A 0.17 unknown(0) TCGA-CV-7248-01 2 242373725 242373726 - T FARP2 Frame_Shift_Ins p.R342Qfs*25 0.13 TCGA-CV-7248-01 2 24484540 24484540 T A ITSN2 Silent p.P809P 0.16 TCGA-CV-7248-01 2 26687858 26687858 G A OTOF Silent p.S1613S 0.13 TCGA-CV-7248-01 2 27663754 27663754 C T NRBP1 Missense_Mutation p.P426S 0.13 tolerated(0.35) benign(0.05) TCGA-CV-7248-01 2 31483477 31483477 G T EHD3 Nonsense_Mutation p.E202* 0.30 TCGA-CV-7248-01 2 31598336 31598336 C A XDH Missense_Mutation p.M504I 0.21 deleterious(0.01) possibly_damaging(0.882) TCGA-CV-7248-01 2 36982161 36982161 T G VIT Missense_Mutation p.S125A 0.13 tolerated(0.13) possibly_damaging(0.829) TCGA-CV-7248-01 2 46574098 46574098 C T EPAS1 Missense_Mutation p.A38V 0.12 deleterious(0) probably_damaging(0.99) TCGA-CV-7248-01 2 54117299 54117299 A T PSME4 Missense_Mutation p.L1413Q 0.17 deleterious(0) probably_damaging(0.977) TCGA-CV-7248-01 2 71043258 71043258 C A CLEC4F Missense_Mutation p.A419S 0.21 tolerated(0.05) benign(0.345) TCGA-CV-7248-01 2 79255021 79255021 T A REG3G Nonsense_Mutation p.L141* 0.17 TCGA-CV-7248-01 2 8822189 8822189 C G ID2 5'UTR 0.31 TCGA-CV-7248-01 2 88991474 88991474 C T RPIA Silent p.G86G 0.26 TCGA-CV-7248-01 2 89999511 89999511 G T IGKV2D-28 Missense_Mutation p.A105S 0.19 deleterious(0.04) benign(0.124) TCGA-CV-7248-01 2 90121952 90121952 G T IGKV1D-17 Missense_Mutation p.W57L 0.09 deleterious(0.01) possibly_damaging(0.852) TCGA-CV-7248-01 3 109031461 109031461 C T DPPA2 Missense_Mutation p.E38K 0.21 deleterious(0.03) probably_damaging(0.968) TCGA-CV-7248-01 3 109031510 109031510 C T DPPA2 Silent p.E21E 0.15 TCGA-CV-7248-01 3 121345686 121345686 C A FBXO40 Missense_Mutation p.P687T 0.19 tolerated(0.59) benign(0.001) TCGA-CV-7248-01 3 13670762 13670762 C T FBLN2 Nonsense_Mutation p.Q938* 0.27 TCGA-CV-7248-01 3 1424822 1424822 C A CNTN6 Missense_Mutation p.S788Y 0.17 deleterious(0) benign(0.281) TCGA-CV-7248-01 3 151163676 151163676 T A IGSF10 Missense_Mutation p.S1365C 0.14 deleterious(0.01) possibly_damaging(0.701) TCGA-CV-7248-01 3 155200696 155200696 T G PLCH1 Missense_Mutation p.H1048P 0.21 tolerated_low_confidence(0.4) benign(0) TCGA-CV-7248-01 3 159606694 159606694 T A IQCJ-SCHIP1 Missense_Mutation p.L503Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-CV-7248-01 3 172480522 172480522 C T ECT2 Missense_Mutation p.L311F 0.20 tolerated(0.09) possibly_damaging(0.891) TCGA-CV-7248-01 3 44442777 44442777 A G TCAIM Missense_Mutation p.I401V 0.23 tolerated(0.14) possibly_damaging(0.654) TCGA-CV-7248-01 3 55513456 55513456 T C WNT5A Missense_Mutation p.I93V 0.28 tolerated(0.49) benign(0.14) TCGA-CV-7248-01 3 63898838 63898838 G A ATXN7 Missense_Mutation p.E111K 0.22 deleterious(0.01) possibly_damaging(0.796) TCGA-CV-7248-01 3 67571002 67571002 C A SUCLG2 Missense_Mutation p.M158I 0.17 tolerated(0.05) benign(0.057) TCGA-CV-7248-01 3 89480488 89480488 A T EPHA3 Silent p.P775P 0.15 TCGA-CV-7248-01 4 113356374 113356374 G T ALPK1 Silent p.G1035G 0.24 TCGA-CV-7248-01 4 114163318 114163318 G C ANK2 Missense_Mutation p.V282L 0.29 possibly_damaging(0.872) TCGA-CV-7248-01 4 155249332 155249332 G A DCHS2 Nonsense_Mutation p.Q856* 0.34 TCGA-CV-7248-01 4 166916211 166916211 A G TLL1 Splice_Site p.X172_splice 0.27 TCGA-CV-7248-01 4 46314643 46314643 A T GABRA2 Missense_Mutation p.L116I 0.25 tolerated(0.19) probably_damaging(0.991) TCGA-CV-7248-01 4 47163453 47163453 T C GABRB1 Missense_Mutation p.L143P 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 4 71096932 71096932 G A FDCSP Silent p.L7L 0.13 TCGA-CV-7248-01 4 78532197 78532197 T A CXCL13 3'UTR 0.38 TCGA-CV-7248-01 4 85414622 85414622 C G NKX6-1 Silent p.S308S 0.37 TCGA-CV-7248-01 5 112175846 112175846 G - APC Frame_Shift_Del p.D1519Mfs*4 0.20 TCGA-CV-7248-01 5 128958005 128958005 T C ADAMTS19 Silent p.L572L 0.19 TCGA-CV-7248-01 5 129070697 129070697 G T ADAMTS19 Nonsense_Mutation p.G1123* 0.32 TCGA-CV-7248-01 5 140262292 140262292 C A PCDHA13 Missense_Mutation p.P147T 0.24 tolerated_low_confidence(0.54) benign(0.085) TCGA-CV-7248-01 5 140346697 140346697 C G PCDHAC2 Missense_Mutation p.R116G 0.26 tolerated(0.14) benign(0.239) TCGA-CV-7248-01 5 140712526 140712526 C A PCDHGA1 Missense_Mutation p.L759I 0.21 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-CV-7248-01 5 140720341 140720341 C T PCDHGA2 Silent p.N601N 0.18 TCGA-CV-7248-01 5 24511436 24511436 C A CDH10 Missense_Mutation p.K334N 0.21 deleterious(0) possibly_damaging(0.462) TCGA-CV-7248-01 5 38486030 38486030 C T LIFR Silent p.L796L 0.17 TCGA-CV-7248-01 5 41061778 41061778 C A MROH2B Missense_Mutation p.R170I 0.22 deleterious(0.02) benign(0.424) TCGA-CV-7248-01 5 60083228 60083228 C T ELOVL7 5'UTR 0.29 TCGA-CV-7248-01 5 94259701 94259701 C T MCTP1 Missense_Mutation p.G413E 0.10 tolerated(0.13) benign(0.023) TCGA-CV-7248-01 6 116288845 116288845 G A FRK Missense_Mutation p.T223I 0.20 deleterious(0.02) possibly_damaging(0.885) TCGA-CV-7248-01 6 129762020 129762020 A G LAMA2 Missense_Mutation p.K2049E 0.12 tolerated(0.96) benign(0.388) TCGA-CV-7248-01 6 132206176 132206176 G C ENPP1 Missense_Mutation p.R806P 0.17 tolerated(0.2) possibly_damaging(0.665) TCGA-CV-7248-01 6 145157526 145157526 C G UTRN Missense_Mutation p.P3305R 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-CV-7248-01 6 152655143 152655143 C G SYNE1 Missense_Mutation p.R4265T 0.16 probably_damaging(0.997) TCGA-CV-7248-01 6 152674536 152674536 C T SYNE1 Silent p.Q3705Q 0.17 TCGA-CV-7248-01 6 167708043 167708043 G T UNC93A Silent p.A42A 0.47 TCGA-CV-7248-01 6 26158752 26158752 G T HIST1H2BD Missense_Mutation p.V119F 0.25 deleterious_low_confidence(0) possibly_damaging(0.744) TCGA-CV-7248-01 6 29012922 29012922 C T OR2W1 Missense_Mutation p.G11S 0.27 tolerated(0.07) benign(0.027) TCGA-CV-7248-01 6 48036085 48036085 A T PTCHD4 Missense_Mutation p.S103T 0.20 tolerated(0.07) probably_damaging(0.914) TCGA-CV-7248-01 6 62604606 62604606 C A KHDRBS2 Silent p.R248R 0.25 TCGA-CV-7248-01 6 62887094 62887094 G T KHDRBS2 Missense_Mutation p.P72Q 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 6 66044934 66044934 C T EYS Missense_Mutation p.D569N 0.08 tolerated(0.1) benign(0.274) TCGA-CV-7248-01 6 66094281 66094281 T C EYS Missense_Mutation p.K433E 0.20 tolerated(0.98) benign(0.002) TCGA-CV-7248-01 6 69349246 69349246 G T BAI3 Nonsense_Mutation p.E227* 0.14 TCGA-CV-7248-01 6 69684742 69684742 C T BAI3 Missense_Mutation p.P538L 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7248-01 7 100281723 100281723 C G GIGYF1 Silent p.P596P 0.22 TCGA-CV-7248-01 7 102952105 102952105 A T PMPCB Silent p.T390T 0.10 TCGA-CV-7248-01 7 103179743 103179743 G T RELN Missense_Mutation p.T2321K 0.19 tolerated(0.11) probably_damaging(0.998) TCGA-CV-7248-01 7 11514030 11514030 C A THSD7A Missense_Mutation p.C728F 0.18 deleterious(0) probably_damaging(0.996) TCGA-CV-7248-01 7 116146236 116146236 A G CAV2 3'UTR 0.30 TCGA-CV-7248-01 7 123097469 123097469 G A IQUB Missense_Mutation p.A720V 0.08 deleterious(0) possibly_damaging(0.786) TCGA-CV-7248-01 7 126173059 126173059 T C GRM8 Missense_Mutation p.I793V 0.14 tolerated(0.75) probably_damaging(0.992) TCGA-CV-7248-01 7 127253104 127253104 C T PAX4 Silent p.E221E 0.16 TCGA-CV-7248-01 7 134363792 134363792 A T BPGM 3'UTR 0.19 TCGA-CV-7248-01 7 141752606 141752607 - T MGAM Frame_Shift_Ins p.C996Lfs*12 0.16 TCGA-CV-7248-01 7 141765147 141765147 G T MGAM Missense_Mutation p.E1499D 0.42 tolerated(0.15) benign(0.02) TCGA-CV-7248-01 7 141951967 141951967 G T PRSS58 3'UTR 0.30 TCGA-CV-7248-01 7 142206646 142206646 G T TRBV10-2 Missense_Mutation p.A70D 0.22 tolerated(0.41) benign(0.001) TCGA-CV-7248-01 7 147259327 147259327 G T CNTNAP2 Silent p.L625L 0.11 TCGA-CV-7248-01 7 21942677 21942677 C A CDCA7L Missense_Mutation p.R418L 0.19 deleterious(0) probably_damaging(0.996) TCGA-CV-7248-01 7 26217588 26217588 A G NFE2L3 Missense_Mutation p.H199R 0.16 tolerated(0.72) benign(0.035) TCGA-CV-7248-01 7 26236079 26236079 T G HNRNPA2B1 Silent p.S212S 0.19 TCGA-CV-7248-01 7 38471788 38471788 C - AMPH Splice_Site p.X386_splice 0.21 TCGA-CV-7248-01 7 38530673 38530673 G T AMPH Missense_Mutation p.L125M 0.17 deleterious(0.02) probably_damaging(1) TCGA-CV-7248-01 7 43982710 43982711 - A UBE2D4 Intron 0.26 TCGA-CV-7248-01 7 53103954 53103954 G T POM121L12 Missense_Mutation p.W197L 0.16 tolerated(0.13) possibly_damaging(0.803) TCGA-CV-7248-01 7 82585852 82585852 C T PCLO Missense_Mutation p.E1473K 0.15 unknown(0) TCGA-CV-7248-01 7 86468529 86468529 G T GRM3 Nonsense_Mutation p.E567* 0.14 TCGA-CV-7248-01 7 87135257 87135257 G C ABCB1 Missense_Mutation p.L1198V 0.21 deleterious(0.01) possibly_damaging(0.894) TCGA-CV-7248-01 7 88423800 88423800 C A C7orf62 Missense_Mutation p.V153F 0.16 deleterious(0.03) possibly_damaging(0.748) TCGA-CV-7248-01 7 91671405 91671405 G T AKAP9 Missense_Mutation p.V1655L 0.19 benign(0.034) TCGA-CV-7248-01 7 94049547 94049547 C A COL1A2 Silent p.G694G 0.10 TCGA-CV-7248-01 7 94146967 94146967 A T CASD1 Missense_Mutation p.S77C 0.10 tolerated(0.06) possibly_damaging(0.796) TCGA-CV-7248-01 8 110457455 110457455 A T PKHD1L1 Missense_Mutation p.Q1786L 0.31 tolerated(0.22) benign(0.005) TCGA-CV-7248-01 8 113317099 113317099 C A CSMD3 Missense_Mutation p.R2706I 0.12 tolerated(0.16) benign(0.223) TCGA-CV-7248-01 8 113364743 113364743 G T CSMD3 Missense_Mutation p.P2053T 0.18 deleterious(0.01) probably_damaging(0.948) TCGA-CV-7248-01 8 124349867 124349867 C T ATAD2 Missense_Mutation p.E1017K 0.16 deleterious(0) possibly_damaging(0.858) TCGA-CV-7248-01 8 12583338 12583338 A T LONRF1 Silent p.V687V 0.11 TCGA-CV-7248-01 8 139601515 139601515 C A COL22A1 Missense_Mutation p.G1621V 0.10 unknown(0) TCGA-CV-7248-01 8 14095184 14095184 C A SGCZ Missense_Mutation p.S114I 0.25 deleterious(0) probably_damaging(0.965) TCGA-CV-7248-01 8 144812599 144812599 C T FAM83H Missense_Mutation p.A52T 0.28 deleterious(0.02) probably_damaging(0.936) TCGA-CV-7248-01 8 38688648 38688648 G A TACC1 Missense_Mutation p.E556K 0.23 deleterious(0.05) probably_damaging(0.954) TCGA-CV-7248-01 8 41552254 41552254 C T ANK1 Silent p.L1102L 0.20 TCGA-CV-7248-01 8 67417763 67417763 G T C8orf46 Missense_Mutation p.V94L 0.22 tolerated(0.23) benign(0.257) TCGA-CV-7248-01 8 71037031 71037031 C A NCOA2 Missense_Mutation p.R1329L 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 8 74922334 74922334 G C LY96 Missense_Mutation p.D101H 0.13 deleterious(0.03) probably_damaging(0.965) TCGA-CV-7248-01 9 104448969 104448969 T C GRIN3A Missense_Mutation p.M405V 0.47 tolerated(0.46) benign(0.009) TCGA-CV-7248-01 9 117092249 117092250 TG - ORM2 Frame_Shift_Del p.A24Qfs*33 0.15 TCGA-CV-7248-01 9 118162697 118162697 G T DEC1 Missense_Mutation p.V25L 0.16 tolerated_low_confidence(0.15) benign(0.004) TCGA-CV-7248-01 9 131001792 131001792 C T DNM1 Silent p.A497A 0.41 TCGA-CV-7248-01 9 134503939 134503939 C T RAPGEF1 Silent p.R339R 0.29 TCGA-CV-7248-01 9 137619158 137619158 A C COL5A1 Missense_Mutation p.Y234S 0.13 possibly_damaging(0.473) TCGA-CV-7248-01 9 139090618 139090618 C A LHX3 Missense_Mutation p.A224S 0.17 deleterious(0) possibly_damaging(0.565) TCGA-CV-7248-01 9 139907591 139907591 A G ABCA2 Missense_Mutation p.L1577P 0.17 tolerated(0.13) possibly_damaging(0.847) TCGA-CV-7248-01 9 140611505 140611505 G A EHMT1 Silent p.T171T 0.43 TCGA-CV-7248-01 9 21974720 21974721 - C CDKN2A Frame_Shift_Ins p.A36Gfs*8 0.44 TCGA-CV-7248-01 9 79325656 79325656 A G PRUNE2 Missense_Mutation p.S512P 0.43 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 9 95872917 95872917 G T C9orf89 Missense_Mutation p.G73V 0.38 deleterious(0) probably_damaging(0.934) TCGA-CV-7248-01 X 100510189 100510189 A T DRP2 Missense_Mutation p.S733C 0.14 tolerated(0.15) benign(0.387) TCGA-CV-7248-01 X 10096607 10096607 C T WWC3 Missense_Mutation p.T764M 0.14 deleterious(0) probably_damaging(0.921) TCGA-CV-7248-01 X 101970137 101970137 G C GPRASP2 Missense_Mutation p.A114P 0.16 deleterious(0.01) benign(0.261) TCGA-CV-7248-01 X 106200165 106200165 C G MORC4 Splice_Site p.X485_splice 0.06 TCGA-CV-7248-01 X 107224687 107224687 C G TEX13B Missense_Mutation p.A188P 0.14 tolerated(0.15) possibly_damaging(0.737) TCGA-CV-7248-01 X 107681488 107681488 C T COL4A6 Intron 0.15 TCGA-CV-7248-01 X 107978562 107978562 G T IRS4 Missense_Mutation p.A338D 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7248-01 X 109695144 109695144 C G RGAG1 Silent p.A433A 0.13 TCGA-CV-7248-01 X 115303582 115303582 G T AGTR2 Missense_Mutation p.G17C 0.23 tolerated(0.08) benign(0.004) TCGA-CV-7248-01 X 115593060 115593060 G T CT83 Silent p.R64R 0.09 TCGA-CV-7248-01 X 117880977 117880977 C A IL13RA1 Missense_Mutation p.Q97K 0.14 tolerated(0.38) benign(0.012) TCGA-CV-7248-01 X 117925913 117925913 T A IL13RA1 3'UTR 0.40 TCGA-CV-7248-01 X 117959998 117959998 T C ZCCHC12 Missense_Mutation p.I264T 0.14 tolerated(0.07) benign(0.291) TCGA-CV-7248-01 X 119005630 119005630 C T RNF113A 5'UTR 0.14 TCGA-CV-7248-01 X 119389152 119389152 G C ZBTB33 Missense_Mutation p.G628R 0.12 tolerated(0.11) possibly_damaging(0.642) TCGA-CV-7248-01 X 119694442 119694442 G A CUL4B Nonsense_Mutation p.Q36* 0.23 TCGA-CV-7248-01 X 123181323 123181323 A C STAG2 Silent p.R263R 0.16 TCGA-CV-7248-01 X 123480493 123480493 A G SH2D1A Translation_Start_Site p.M1? 0.13 deleterious(0.03) probably_damaging(0.977) TCGA-CV-7248-01 X 123805604 123805604 C A TENM1 Missense_Mutation p.R366M 0.14 tolerated_low_confidence(0.09) benign(0.264) TCGA-CV-7248-01 X 127185945 127185945 C A ACTRT1 Nonsense_Mutation p.G81* 0.19 TCGA-CV-7248-01 X 134033180 134033180 G T MOSPD1 Missense_Mutation p.P57Q 0.20 deleterious(0) probably_damaging(1) TCGA-CV-7248-01 X 135288651 135288651 G C FHL1 Silent p.V20V 0.15 TCGA-CV-7248-01 X 135426794 135426794 C A GPR112 Missense_Mutation p.T310K 0.14 deleterious(0.04) possibly_damaging(0.69) TCGA-CV-7248-01 X 135482271 135482271 T A GPR112 Silent p.G2857G 0.11 TCGA-CV-7248-01 X 138670521 138670521 G T MCF2 Missense_Mutation p.T892K 0.20 tolerated(0.51) benign(0.091) TCGA-CV-7248-01 X 138844238 138844238 G T ATP11C Missense_Mutation p.A844E 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 X 140786490 140786490 C T SPANXD Splice_Site p.X24_splice 0.23 TCGA-CV-7248-01 X 142967601 142967601 C A UBE2NL Missense_Mutation p.N133K 0.08 deleterious(0.04) benign(0.211) TCGA-CV-7248-01 X 14748715 14748715 G A GLRA2 3'UTR 0.40 TCGA-CV-7248-01 X 148713282 148713282 G A TMEM185A 5'UTR 0.23 TCGA-CV-7248-01 X 148798378 148798378 C A MAGEA11 Missense_Mutation p.P411H 0.12 deleterious(0.05) probably_damaging(0.91) TCGA-CV-7248-01 X 151283933 151283933 C A RP11-1007I13.4 RNA 0.15 TCGA-CV-7248-01 X 151283934 151283934 C A RP11-1007I13.4 RNA 0.15 TCGA-CV-7248-01 X 153046726 153046726 C A SRPK3 Missense_Mutation p.P39T 0.17 deleterious_low_confidence(0.01) benign(0.187) TCGA-CV-7248-01 X 153049747 153049747 A T SRPK3 Splice_Site p.X383_splice 0.16 TCGA-CV-7248-01 X 153218076 153218076 C A HCFC1 Nonsense_Mutation p.E1611* 0.16 TCGA-CV-7248-01 X 153664276 153664276 C T ATP6AP1 3'UTR 0.19 TCGA-CV-7248-01 X 153944560 153944560 G T GAB3 Missense_Mutation p.S39R 0.14 deleterious(0) possibly_damaging(0.907) TCGA-CV-7248-01 X 18919705 18919705 G T PHKA2 Silent p.S975S 0.21 TCGA-CV-7248-01 X 22129609 22129609 G C PHEX Missense_Mutation p.W368C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 X 27765882 27765882 G T DCAF8L2 Missense_Mutation p.M290I 0.25 tolerated(0.07) benign(0.283) TCGA-CV-7248-01 X 30327463 30327463 G A NR0B1 Silent p.H6H 0.29 TCGA-CV-7248-01 X 34962805 34962805 C G FAM47B Missense_Mutation p.D619E 0.15 tolerated(0.14) probably_damaging(0.945) TCGA-CV-7248-01 X 35990013 35990013 T C CXorf22 Missense_Mutation p.S729P 0.19 deleterious(0.01) probably_damaging(0.943) TCGA-CV-7248-01 X 37026701 37026701 G T FAM47C Missense_Mutation p.R73L 0.21 tolerated(0.51) benign(0.028) TCGA-CV-7248-01 X 41031206 41031206 C G USP9X Missense_Mutation p.P1048R 0.10 deleterious(0) probably_damaging(0.997) TCGA-CV-7248-01 X 47272115 47272115 G C ZNF157 Missense_Mutation p.E215Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-7248-01 X 47516687 47516687 G A UXT Missense_Mutation p.P96L 0.29 deleterious(0) benign(0.35) TCGA-CV-7248-01 X 47836067 47836067 G C ZNF182 Silent p.L473L 0.14 TCGA-CV-7248-01 X 48418232 48418232 G A TBC1D25 Silent p.R312R 0.19 TCGA-CV-7248-01 X 48681334 48681334 G T HDAC6 Missense_Mutation p.R842I 0.09 tolerated(0.12) benign(0) TCGA-CV-7248-01 X 49021378 49021378 G T MAGIX Missense_Mutation p.V153L 0.20 deleterious(0) probably_damaging(0.921) TCGA-CV-7248-01 X 49065125 49065125 G T CACNA1F Missense_Mutation p.P1669H 0.14 tolerated(0.25) benign(0.032) TCGA-CV-7248-01 X 49961630 49961630 G C AKAP4 Missense_Mutation p.S63C 0.19 tolerated(0.09) benign(0.015) TCGA-CV-7248-01 X 50376870 50376870 G C SHROOM4 Missense_Mutation p.Q735E 0.19 deleterious(0) benign(0.345) TCGA-CV-7248-01 X 54577458 54577458 G T GNL3L Missense_Mutation p.V280L 0.13 deleterious(0) possibly_damaging(0.718) TCGA-CV-7248-01 X 55513447 55513447 A T USP51 Nonsense_Mutation p.C642* 0.08 TCGA-CV-7248-01 X 55784705 55784705 C A RRAGB Missense_Mutation p.R352S 0.17 tolerated(0.08) benign(0.033) TCGA-CV-7248-01 X 65486459 65486459 G T HEPH Missense_Mutation p.R1195L 0.24 deleterious_low_confidence(0.01) benign(0.143) TCGA-CV-7248-01 X 67942409 67942409 T C STARD8 Missense_Mutation p.L907P 0.17 deleterious(0) probably_damaging(0.973) TCGA-CV-7248-01 X 70282792 70282792 A T SNX12 Missense_Mutation p.L58Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 X 70338650 70338650 C G MED12 Missense_Mutation p.R16G 0.13 probably_damaging(0.981) TCGA-CV-7248-01 X 70523356 70523356 G A ITGB1BP2 Missense_Mutation p.G153E 0.18 deleterious(0) possibly_damaging(0.864) TCGA-CV-7248-01 X 70614023 70614023 A G TAF1 Missense_Mutation p.K1132E 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 X 72667341 72667341 C T CDX4 Silent p.S84S 0.12 TCGA-CV-7248-01 X 73962135 73962135 G T KIAA2022 Missense_Mutation p.Q753K 0.14 tolerated(0.23) benign(0.004) TCGA-CV-7248-01 X 74282246 74282246 C T ABCB7 Missense_Mutation p.A619T 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7248-01 X 74494242 74494242 C A UPRT Silent p.L51L 0.16 TCGA-CV-7248-01 X 75650773 75650773 G T MAGEE1 Missense_Mutation p.R817L 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-7248-01 X 76944409 76944409 G T ATRX Missense_Mutation p.H166N 0.10 probably_damaging(0.987) TCGA-CV-7248-01 X 91090898 91090898 T C PCDH11X Missense_Mutation p.I132T 0.20 tolerated(0.12) benign(0.024) TCGA-CV-7250-01 10 103291078 103291078 A T BTRC Silent p.I276I 0.31 TCGA-CV-7250-01 10 103343337 103343337 G A POLL Silent p.S331S 0.33 TCGA-CV-7250-01 10 115534710 115534710 C A PLEKHS1 Missense_Mutation p.S296Y 0.29 tolerated(0.42) possibly_damaging(0.681) TCGA-CV-7250-01 10 121182709 121182709 A C GRK5 Missense_Mutation p.D124A 0.24 tolerated(0.35) benign(0.006) TCGA-CV-7250-01 10 122280508 122280508 T A PPAPDC1A Missense_Mutation p.C116S 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7250-01 10 24825815 24825817 AGA - KIAA1217 In_Frame_Del p.K1178del 0.47 TCGA-CV-7250-01 10 45484754 45484754 G A RASSF4 Silent p.V188V 0.27 TCGA-CV-7250-01 10 5958267 5958267 G - FBXO18 Frame_Shift_Del p.K598Rfs*5 0.17 TCGA-CV-7250-01 10 69925475 69925475 G A MYPN Silent p.L500L 0.11 TCGA-CV-7250-01 10 70139220 70139220 G C RUFY2 Missense_Mutation p.T424S 0.12 deleterious(0.04) benign(0.087) TCGA-CV-7250-01 10 75059376 75059376 C T TTC18 Missense_Mutation p.G505E 0.33 tolerated(0.27) benign(0.143) TCGA-CV-7250-01 11 115102137 115102137 G A CADM1 Silent p.C166C 0.34 TCGA-CV-7250-01 11 123814471 123814471 G T OR6T1 Missense_Mutation p.F25L 0.34 tolerated(0.39) benign(0.001) TCGA-CV-7250-01 11 124121200 124121200 T A OR8G1 Splice_Site p.X259_splice 0.32 TCGA-CV-7250-01 11 32615476 32615476 G T EIF3M Missense_Mutation p.A200S 0.33 deleterious(0) probably_damaging(0.978) TCGA-CV-7250-01 11 533874 533874 T A HRAS Missense_Mutation p.Q61L 0.27 deleterious(0) possibly_damaging(0.476) TCGA-CV-7250-01 11 62439187 62439187 C T C11orf48 5'Flank 0.17 TCGA-CV-7250-01 11 63585325 63585325 C A C11orf84 Missense_Mutation p.A59E 0.24 deleterious(0.05) possibly_damaging(0.475) TCGA-CV-7250-01 11 7064303 7064303 C - NLRP14 Frame_Shift_Del p.M350* 0.22 TCGA-CV-7250-01 11 71277066 71277066 T C KRTAP5-10 Missense_Mutation p.C145R 0.34 unknown(0) TCGA-CV-7250-01 11 720677 720677 G A EPS8L2 Silent p.L136L 0.42 TCGA-CV-7250-01 11 92532912 92532912 C T FAT3 Missense_Mutation p.P2245S 0.27 benign(0.395) TCGA-CV-7250-01 11 93806191 93806191 T G HEPHL1 Missense_Mutation p.S411R 0.25 deleterious(0.04) benign(0.071) TCGA-CV-7250-01 12 126138423 126138423 G T TMEM132B Missense_Mutation p.D802Y 0.09 tolerated(0.09) possibly_damaging(0.805) TCGA-CV-7250-01 12 126138424 126138424 A G TMEM132B Missense_Mutation p.D802G 0.09 tolerated(0.17) possibly_damaging(0.544) TCGA-CV-7250-01 12 23999030 23999030 G A SOX5 Missense_Mutation p.S123F 0.34 tolerated(0.71) benign(0.309) TCGA-CV-7250-01 12 29469874 29469874 G A FAR2 Nonsense_Mutation p.W352* 0.08 TCGA-CV-7250-01 12 48920192 48920192 C G OR8S1 Missense_Mutation p.L260V 0.30 tolerated(0.05) possibly_damaging(0.479) TCGA-CV-7250-01 12 58142978 58142978 G A CDK4 Missense_Mutation p.A269V 0.18 tolerated(0.3) benign(0.007) TCGA-CV-7250-01 12 666883 666883 G A B4GALNT3 Silent p.E830E 0.39 TCGA-CV-7250-01 12 75889388 75889388 G A GLIPR1 Missense_Mutation p.G189R 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-7250-01 12 7966902 7966902 G A SLC2A14 3'UTR 0.60 TCGA-CV-7250-01 12 8073999 8073999 G A SLC2A3 3'UTR 0.11 TCGA-CV-7250-01 12 91348312 91348312 G T CCER1 Missense_Mutation p.Q70K 0.38 tolerated(0.12) benign(0.003) TCGA-CV-7250-01 13 20641147 20641148 GA - ZMYM2 Frame_Shift_Del p.E1097Vfs*5 0.19 TCGA-CV-7250-01 13 21331600 21331600 C T N6AMT2 Silent p.E46E 0.26 TCGA-CV-7250-01 13 33703125 33703125 A G STARD13 Silent p.P563P 0.35 TCGA-CV-7250-01 13 38320520 38320520 G - TRPC4 Frame_Shift_Del p.H151Ifs*7 0.25 TCGA-CV-7250-01 13 53313231 53313231 C G LECT1 Missense_Mutation p.G50R 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7250-01 13 86368987 86368987 C T SLITRK6 Missense_Mutation p.D553N 0.17 tolerated(0.12) benign(0.001) TCGA-CV-7250-01 13 97639754 97639754 G T OXGR1 Missense_Mutation p.P87H 0.36 deleterious(0) probably_damaging(1) TCGA-CV-7250-01 14 102900897 102900897 G T TECPR2 Silent p.L581L 0.26 TCGA-CV-7250-01 14 20389043 20389043 C A OR4K5 Missense_Mutation p.S93Y 0.16 deleterious(0) probably_damaging(0.987) TCGA-CV-7250-01 14 23859422 23859422 C T MYH6 Silent p.A1192A 0.24 TCGA-CV-7250-01 14 26918046 26918046 T A NOVA1 Missense_Mutation p.N215Y 0.36 deleterious(0) unknown(0) TCGA-CV-7250-01 14 35245154 35245154 C T BAZ1A Missense_Mutation p.R935H 0.24 tolerated(0.64) benign(0) TCGA-CV-7250-01 14 70633784 70633784 C A SLC8A3 Silent p.T452T 0.29 TCGA-CV-7250-01 14 70634902 70634902 A G SLC8A3 Missense_Mutation p.Y80H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-7250-01 14 88940131 88940131 G A PTPN21 Nonsense_Mutation p.R843* 0.11 TCGA-CV-7250-01 14 95081045 95081045 G A SERPINA3 Silent p.L89L 0.10 TCGA-CV-7250-01 15 25213157 25213157 C T SNURF Silent p.F63F 0.06 TCGA-CV-7250-01 15 25451254 25451254 C A SNORD115-22 5'Flank 0.43 TCGA-CV-7250-01 15 25959362 25959362 G T ATP10A Silent p.S601S 0.32 TCGA-CV-7250-01 15 30003119 30003119 G C TJP1 Missense_Mutation p.P1430A 0.40 deleterious_low_confidence(0.01) benign(0.008) TCGA-CV-7250-01 15 30033539 30033539 G A TJP1 Missense_Mutation p.L418F 0.44 tolerated(0.08) benign(0.019) TCGA-CV-7250-01 15 34529660 34529661 - A SLC12A6 Frame_Shift_Ins p.Y965Lfs*6 0.28 TCGA-CV-7250-01 15 42107957 42107957 G C MAPKBP1 Missense_Mutation p.G491R 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7250-01 15 50788056 50788056 G C USP8 Silent p.R890R 0.29 TCGA-CV-7250-01 15 85399896 85399896 G T ALPK3 Missense_Mutation p.A845S 0.26 deleterious_low_confidence(0.02) benign(0.055) TCGA-CV-7250-01 15 91455444 91455444 A C MAN2A2 Missense_Mutation p.S761R 0.30 tolerated(0.24) benign(0.006) TCGA-CV-7250-01 16 28617197 28617197 G A SULT1A1 Missense_Mutation p.A278V 0.27 tolerated(0.15) benign(0.013) TCGA-CV-7250-01 16 47627442 47627442 T C PHKB Missense_Mutation p.I367T 0.37 deleterious(0) benign(0.278) TCGA-CV-7250-01 16 66976677 66976677 G A CES2 Missense_Mutation p.G534E 0.12 tolerated(0.58) benign(0.098) TCGA-CV-7250-01 17 10318656 10318656 C G MYH8 Missense_Mutation p.A232P 0.26 deleterious(0.01) probably_damaging(1) TCGA-CV-7250-01 17 10318897 10318897 G T MYH8 Silent p.T180T 0.32 TCGA-CV-7250-01 17 11573072 11573072 T G DNAH9 Missense_Mutation p.L1105R 0.30 benign(0.014) TCGA-CV-7250-01 17 20884854 20884854 A G RP11-381P6.1 RNA 0.22 TCGA-CV-7250-01 17 30228722 30228722 G T UTP6 5'UTR 0.17 TCGA-CV-7250-01 17 34234112 34234112 G T AC015849.16 RNA 0.12 TCGA-CV-7250-01 17 37881982 37881982 G A ERBB2 Missense_Mutation p.M916I 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-7250-01 17 41222997 41222997 C A BRCA1 Missense_Mutation p.R1666M 0.47 deleterious(0.02) possibly_damaging(0.641) TCGA-CV-7250-01 17 42248236 42248236 G C ASB16 Missense_Mutation p.D27H 0.16 deleterious(0.03) probably_damaging(0.956) TCGA-CV-7250-01 17 46239901 46239901 C T SKAP1 Nonsense_Mutation p.W303* 0.13 TCGA-CV-7250-01 17 46620658 46620658 C T HOXB2 Silent p.G281G 0.15 TCGA-CV-7250-01 17 49726560 49726560 G C CA10 Missense_Mutation p.T206R 0.07 deleterious(0.04) probably_damaging(0.959) TCGA-CV-7250-01 17 55072947 55072947 A G SCPEP1 Missense_Mutation p.Y246C 0.05 deleterious(0) probably_damaging(0.928) TCGA-CV-7250-01 17 62084071 62084071 C G ICAM2 5'UTR 0.18 TCGA-CV-7250-01 17 72233624 72233624 C T TTYH2 Silent p.S202S 0.09 TCGA-CV-7250-01 17 72285736 72285736 C T DNAI2 Silent p.D157D 0.38 TCGA-CV-7250-01 17 76396892 76396892 A - PGS1 Frame_Shift_Del p.D279Afs*32 0.18 TCGA-CV-7250-01 17 78055742 78055742 G T CCDC40 Missense_Mutation p.R625M 0.20 deleterious(0) probably_damaging(0.91) TCGA-CV-7250-01 18 31432903 31432903 T C NOL4 Missense_Mutation p.N607S 0.35 tolerated(0.85) benign(0.008) TCGA-CV-7250-01 18 5415995 5415995 G A EPB41L3 Missense_Mutation p.P630L 0.23 tolerated(0.12) probably_damaging(0.981) TCGA-CV-7250-01 18 73000493 73000493 G A TSHZ1 Missense_Mutation p.R999Q 0.31 deleterious(0) probably_damaging(1) TCGA-CV-7250-01 19 11105592 11105592 C A SMARCA4 Missense_Mutation p.A503E 0.29 probably_damaging(0.944) TCGA-CV-7250-01 19 11141507 11141507 G T SMARCA4 Missense_Mutation p.G1162C 0.38 probably_damaging(1) TCGA-CV-7250-01 19 11546873 11546873 A G PRKCSH 5'UTR 0.13 TCGA-CV-7250-01 19 12187076 12187076 G C ZNF844 Missense_Mutation p.D381H 0.25 tolerated(0.1) benign(0.001) TCGA-CV-7250-01 19 1467216 1467216 G A APC2 Missense_Mutation p.G1306R 0.25 possibly_damaging(0.515) TCGA-CV-7250-01 19 20308131 20308131 T C ZNF486 Silent p.D204D 0.31 TCGA-CV-7250-01 19 37441482 37441482 G A ZNF568 Missense_Mutation p.C476Y 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7250-01 19 37677286 37677286 T A ZNF585B Missense_Mutation p.S385C 0.13 deleterious(0.02) possibly_damaging(0.855) TCGA-CV-7250-01 19 38652910 38652910 C G SIPA1L3 Missense_Mutation p.P1227A 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7250-01 19 39207844 39207844 C T ACTN4 Missense_Mutation p.P344L 0.08 deleterious(0) probably_damaging(1) TCGA-CV-7250-01 19 40929342 40929342 G A SERTAD1 Missense_Mutation p.P38S 0.34 tolerated(0.37) benign(0.054) TCGA-CV-7250-01 19 43433722 43433722 T A PSG7 Missense_Mutation p.Q194L 0.35 deleterious(0.04) benign(0.272) TCGA-CV-7250-01 19 50099588 50099588 G A PRR12 Missense_Mutation p.G666R 0.35 probably_damaging(0.98) TCGA-CV-7250-01 19 51633226 51633226 G T SIGLEC9 Intron 0.10 TCGA-CV-7250-01 19 52023284 52023284 A T SIGLEC6 3'UTR 0.26 TCGA-CV-7250-01 19 53058290 53058290 C T ZNF808 Silent p.Y707Y 0.07 TCGA-CV-7250-01 19 53762612 53762612 C T VN1R2 Silent p.Y328Y 0.29 TCGA-CV-7250-01 19 54496175 54496175 G C CACNG6 Missense_Mutation p.R15P 0.27 tolerated(0.22) probably_damaging(0.999) TCGA-CV-7250-01 19 55294944 55294944 C T KIR2DL1 Missense_Mutation p.A275V 0.20 deleterious(0.03) benign(0.002) TCGA-CV-7250-01 19 58038828 58038828 A T ZNF549 5'UTR 0.50 TCGA-CV-7250-01 19 58058918 58058918 C G ZNF550 Missense_Mutation p.E191Q 0.29 deleterious(0.02) benign(0.096) TCGA-CV-7250-01 19 7986386 7986386 G A SNAPC2 Missense_Mutation p.G88R 0.35 deleterious(0.04) probably_damaging(0.979) TCGA-CV-7250-01 1 103400075 103400075 C T COL11A1 Missense_Mutation p.G1177E 0.24 unknown(0) TCGA-CV-7250-01 1 11082376 11082376 G A TARDBP Missense_Mutation p.G304S 0.09 tolerated(0.1) benign(0.028) TCGA-CV-7250-01 1 14107331 14107331 C - PRDM2 Frame_Shift_Del p.T1015Pfs*26 0.27 TCGA-CV-7250-01 1 145762094 145762094 T C PDZK1 Missense_Mutation p.I424T 0.17 deleterious(0.05) benign(0.12) TCGA-CV-7250-01 1 149876628 149876628 G A SV2A Missense_Mutation p.L723F 0.20 deleterious(0.05) probably_damaging(0.998) TCGA-CV-7250-01 1 150808901 150808901 C A ARNT Missense_Mutation p.R185S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7250-01 1 150941485 150941485 G A CERS2 Nonsense_Mutation p.R28* 0.12 TCGA-CV-7250-01 1 158152775 158152775 A T CD1D Missense_Mutation p.M239L 0.07 deleterious(0.03) benign(0.26) TCGA-CV-7250-01 1 160520798 160520798 G C CD84 Missense_Mutation p.T280R 0.06 deleterious(0.01) benign(0.025) TCGA-CV-7250-01 1 165398200 165398200 G A RXRG Missense_Mutation p.S18F 0.43 tolerated_low_confidence(0.11) probably_damaging(0.962) TCGA-CV-7250-01 1 1685535 1685535 C T NADK Silent p.S497S 0.11 TCGA-CV-7250-01 1 177934270 177934270 C T SEC16B Missense_Mutation p.E149K 0.10 tolerated(0.24) possibly_damaging(0.536) TCGA-CV-7250-01 1 202287594 202287594 G A LGR6 Silent p.A721A 0.23 TCGA-CV-7250-01 1 203008176 203008176 C T PPFIA4 Silent p.L14L 0.20 TCGA-CV-7250-01 1 205238351 205238351 C T TMCC2 Nonsense_Mutation p.Q341* 0.08 TCGA-CV-7250-01 1 206972269 206972269 A T IL19 Missense_Mutation p.R10S 0.29 tolerated_low_confidence(0.85) benign(0.003) TCGA-CV-7250-01 1 236714247 236714247 C T HEATR1 Silent p.Q2130Q 0.44 TCGA-CV-7250-01 1 248685148 248685148 G T OR2G6 Silent p.S67S 0.11 TCGA-CV-7250-01 1 36226310 36226311 - T CLSPN Frame_Shift_Ins p.N404Kfs*2 0.14 TCGA-CV-7250-01 1 41978886 41978886 T A HIVEP3 Missense_Mutation p.E2002D 0.39 benign(0.069) TCGA-CV-7250-01 1 42050284 42050284 G A HIVEP3 Missense_Mutation p.P62L 0.37 possibly_damaging(0.628) TCGA-CV-7250-01 1 44063572 44063572 G A PTPRF Missense_Mutation p.R656Q 0.31 tolerated(0.58) benign(0.386) TCGA-CV-7250-01 1 57422503 57422503 A G C8B Silent p.C110C 0.11 TCGA-CV-7250-01 1 70616847 70616847 A T LRRC40 Missense_Mutation p.L494Q 0.35 deleterious(0) probably_damaging(0.992) TCGA-CV-7250-01 1 75038758 75038758 T C C1orf173 Missense_Mutation p.Q879R 0.31 tolerated(0.12) benign(0.035) TCGA-CV-7250-01 1 906364 906364 G A PLEKHN1 Missense_Mutation p.R197H 0.33 tolerated(0.29) benign(0.002) TCGA-CV-7250-01 1 91859650 91859650 C G HFM1 Missense_Mutation p.R165T 0.44 deleterious_low_confidence(0.04) benign(0.118) TCGA-CV-7250-01 1 94669495 94669495 A G ARHGAP29 Silent p.I251I 0.20 TCGA-CV-7250-01 1 99772018 99772018 A C LPPR4 Missense_Mutation p.M582L 0.32 tolerated(0.23) benign(0.008) TCGA-CV-7250-01 20 32247476 32247476 C T NECAB3 Missense_Mutation p.D236N 0.29 deleterious(0.02) benign(0.226) TCGA-CV-7250-01 20 34078580 34078580 C T CEP250 Nonsense_Mutation p.Q902* 0.10 TCGA-CV-7250-01 20 36869729 36869729 G A KIAA1755 Silent p.S268S 0.12 TCGA-CV-7250-01 20 42815270 42815270 G T JPH2 Missense_Mutation p.H26N 0.15 deleterious(0) probably_damaging(0.997) TCGA-CV-7250-01 20 9561116 9561116 G A PAK7 Silent p.A222A 0.30 TCGA-CV-7250-01 21 31933565 31933565 C T KRTAP19-7 Missense_Mutation p.C15Y 0.22 tolerated_low_confidence(1) unknown(0) TCGA-CV-7250-01 22 18031816 18031816 C T CECR2 Missense_Mutation p.P1439S 0.26 deleterious_low_confidence(0.05) benign(0.201) TCGA-CV-7250-01 22 25131809 25131809 G A PIWIL3 Silent p.P500P 0.27 TCGA-CV-7250-01 22 29169754 29169754 A T CCDC117 Missense_Mutation p.E76V 0.41 deleterious(0.04) benign(0.005) TCGA-CV-7250-01 22 39772188 39772188 T G SYNGR1 Missense_Mutation p.S157A 0.41 deleterious(0) probably_damaging(0.999) TCGA-CV-7250-01 22 47103761 47103761 G A CERK Missense_Mutation p.R232W 0.12 deleterious(0) probably_damaging(0.993) TCGA-CV-7250-01 22 50705870 50705870 A T MAPK11 Missense_Mutation p.I116N 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7250-01 2 112786077 112786077 A G MERTK Missense_Mutation p.E879G 0.21 tolerated(0.1) benign(0.033) TCGA-CV-7250-01 2 113417263 113417263 G A SLC20A1 Missense_Mutation p.V511I 0.06 deleterious(0.03) benign(0.028) TCGA-CV-7250-01 2 11367521 11367521 C T ROCK2 Missense_Mutation p.G243S 0.28 deleterious(0.02) probably_damaging(1) TCGA-CV-7250-01 2 113764229 113764229 G C IL36A Missense_Mutation p.G60A 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-CV-7250-01 2 119603946 119603946 C T EN1 Silent p.S266S 0.26 TCGA-CV-7250-01 2 138414509 138414510 - A THSD7B Frame_Shift_Ins p.Q1421Tfs*26 0.19 TCGA-CV-7250-01 2 145156077 145156077 G A ZEB2 Missense_Mutation p.P893S 0.05 tolerated(0.07) possibly_damaging(0.531) TCGA-CV-7250-01 2 149270514 149270514 A G MBD5 3'UTR 0.09 TCGA-CV-7250-01 2 152423805 152423805 G A NEB Silent p.A6011A 0.49 TCGA-CV-7250-01 2 152483591 152483591 G C NEB Missense_Mutation p.D3424E 0.07 benign(0.069) TCGA-CV-7250-01 2 163695089 163695089 C T KCNH7 5'UTR 0.27 TCGA-CV-7250-01 2 1651956 1651956 T C PXDN Missense_Mutation p.E1199G 0.14 deleterious(0.04) possibly_damaging(0.643) TCGA-CV-7250-01 2 179606601 179606601 C T TTN Missense_Mutation p.A3787T 0.29 TCGA-CV-7250-01 2 189870100 189870100 A T COL3A1 Missense_Mutation p.N986Y 0.46 probably_damaging(0.984) TCGA-CV-7250-01 2 197767327 197767327 G T PGAP1 Silent p.T263T 0.31 TCGA-CV-7250-01 2 206590770 206590770 G T NRP2 Missense_Mutation p.W318C 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-7250-01 2 213878608 213878608 T C IKZF2 Missense_Mutation p.I255V 0.35 tolerated(0.14) benign(0.019) TCGA-CV-7250-01 2 219507531 219507531 C A ZNF142 Silent p.T1236T 0.27 TCGA-CV-7250-01 2 228560704 228560704 C T SLC19A3 Missense_Mutation p.G358D 0.25 deleterious(0.01) probably_damaging(0.928) TCGA-CV-7250-01 2 234652654 234652654 G A UGT1A10 Intron 0.23 TCGA-CV-7250-01 2 239307657 239307657 A G TRAF3IP1 3'UTR 0.30 TCGA-CV-7250-01 2 25468197 25468197 G A DNMT3A Silent p.I493I 0.46 TCGA-CV-7250-01 2 73478562 73478562 T G CCT7 Splice_Site p.X470_splice 0.14 TCGA-CV-7250-01 2 95513821 95513821 G A RNU6-1320P 5'Flank 0.06 TCGA-CV-7250-01 3 101535734 101535734 C T NXPE3 Nonsense_Mutation p.Q340* 0.07 TCGA-CV-7250-01 3 108353773 108353773 G T DZIP3 Missense_Mutation p.C291F 0.21 deleterious(0) possibly_damaging(0.542) TCGA-CV-7250-01 3 129303021 129303021 G A PLXND1 Silent p.A695A 0.45 TCGA-CV-7250-01 3 130380825 130380825 G T COL6A6 Missense_Mutation p.A2059S 0.24 tolerated(0.2) benign(0.04) TCGA-CV-7250-01 3 133306682 133306682 A G CDV3 Intron 0.33 TCGA-CV-7250-01 3 154834497 154834497 C G MME Missense_Mutation p.P162A 0.12 tolerated(0.37) benign(0.002) TCGA-CV-7250-01 3 164727122 164727122 G T SI Missense_Mutation p.A1375D 0.23 tolerated(0.13) benign(0.41) TCGA-CV-7250-01 3 170723243 170723243 C T SLC2A2 Missense_Mutation p.G265E 0.32 deleterious(0) probably_damaging(0.998) TCGA-CV-7250-01 3 172165726 172165726 C T GHSR Missense_Mutation p.V160M 0.10 deleterious(0) probably_damaging(0.994) TCGA-CV-7250-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.22 deleterious(0.02) probably_damaging(0.959) TCGA-CV-7250-01 3 191093190 191093190 G A CCDC50 Missense_Mutation p.R263Q 0.28 tolerated(0.22) benign(0.005) TCGA-CV-7250-01 3 193156328 193156328 C G ATP13A4 Missense_Mutation p.A870P 0.46 deleterious(0) probably_damaging(0.999) TCGA-CV-7250-01 3 21706434 21706434 G T ZNF385D Missense_Mutation p.L37I 0.29 deleterious(0.01) possibly_damaging(0.899) TCGA-CV-7250-01 3 33059966 33059966 C T GLB1 Missense_Mutation p.D441N 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7250-01 3 35833960 35833960 A T ARPP21 Missense_Mutation p.N708Y 0.34 deleterious(0) benign(0.269) TCGA-CV-7250-01 3 41267196 41267196 C T CTNNB1 Silent p.H260H 0.58 TCGA-CV-7250-01 3 45127378 45127378 G A CDCP1 Silent p.L755L 0.62 TCGA-CV-7250-01 3 4768850 4768850 A G ITPR1 Missense_Mutation p.H1723R 0.29 tolerated(0.56) benign(0) TCGA-CV-7250-01 3 52637658 52637658 A G PBRM1 Silent p.L886L 0.23 TCGA-CV-7250-01 3 52778296 52778297 CT - NEK4 Frame_Shift_Del p.R618Efs*45 0.26 TCGA-CV-7250-01 4 128732697 128732697 C T HSPA4L Missense_Mutation p.A495V 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-7250-01 4 140309172 140309172 G A NAA15 Silent p.E845E 0.32 TCGA-CV-7250-01 4 157689065 157689065 C T PDGFC Missense_Mutation p.E261K 0.29 tolerated(0.06) probably_damaging(0.931) TCGA-CV-7250-01 4 183601503 183601503 G A TENM3 Splice_Site p.X547_splice 0.29 TCGA-CV-7250-01 4 184432021 184432021 G C ING2 Missense_Mutation p.W253C 0.12 deleterious(0.04) probably_damaging(1) TCGA-CV-7250-01 4 187557355 187557355 G C FAT1 Nonsense_Mutation p.S1336* 0.30 TCGA-CV-7250-01 4 25013978 25013978 G A LGI2 Missense_Mutation p.R267W 0.07 deleterious(0.01) probably_damaging(0.939) TCGA-CV-7250-01 4 70620403 70620403 C A SULT1B1 Nonsense_Mutation p.G88* 0.29 TCGA-CV-7250-01 4 87703369 87703369 G A PTPN13 Missense_Mutation p.G1998E 0.10 tolerated(1) benign(0.002) TCGA-CV-7250-01 5 114588910 114588910 C T PGGT1B Silent p.L61L 0.19 TCGA-CV-7250-01 5 123983042 123983042 C A ZNF608 Missense_Mutation p.G1012V 0.32 deleterious(0) possibly_damaging(0.725) TCGA-CV-7250-01 5 128351596 128351596 C A SLC27A6 Missense_Mutation p.H330N 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7250-01 5 132015436 132015436 G A IL4 Missense_Mutation p.A72T 0.32 tolerated(0.1) probably_damaging(0.992) TCGA-CV-7250-01 5 140222342 140222342 C T PCDHA8 Missense_Mutation p.A479V 0.66 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-CV-7250-01 5 140262926 140262926 C T PCDHA13 Missense_Mutation p.P358L 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.842) TCGA-CV-7250-01 5 140731974 140731974 G T PCDHGB1 Missense_Mutation p.S716I 0.09 deleterious(0.02) benign(0.413) TCGA-CV-7250-01 5 156590090 156590090 C G FAM71B Missense_Mutation p.G396R 0.39 tolerated(0.36) benign(0.007) TCGA-CV-7250-01 5 161128536 161128536 G A GABRA6 Silent p.R373R 0.25 TCGA-CV-7250-01 5 175995964 175995965 CT - CDHR2 Frame_Shift_Del p.Y91Hfs*26 0.26 TCGA-CV-7250-01 5 176517973 176517973 G C FGFR4 Missense_Mutation p.K157N 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7250-01 5 176665392 176665392 C A NSD1 Nonsense_Mutation p.S1359* 0.69 TCGA-CV-7250-01 5 177548532 177548532 G A N4BP3 Missense_Mutation p.A389T 0.35 tolerated(0.05) possibly_damaging(0.45) TCGA-CV-7250-01 5 179228834 179228837 CTTT - MGAT4B Frame_Shift_Del p.E92Gfs*16 0.20 TCGA-CV-7250-01 5 26903930 26903930 G A CDH9 Missense_Mutation p.T272M 0.20 tolerated(0.39) benign(0.014) TCGA-CV-7250-01 5 70308342 70308342 T C NAIP Missense_Mutation p.N134S 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-CV-7250-01 5 74064792 74064792 T A NSA2 Missense_Mutation p.Y14N 0.36 deleterious(0.04) possibly_damaging(0.549) TCGA-CV-7250-01 5 96478236 96478236 G A LIX1 Silent p.V15V 0.11 TCGA-CV-7250-01 6 119338093 119338093 T C FAM184A Missense_Mutation p.K450R 0.24 tolerated(0.21) benign(0.067) TCGA-CV-7250-01 6 138566721 138566721 G T KIAA1244 Missense_Mutation p.A220S 0.24 tolerated(0.24) benign(0.003) TCGA-CV-7250-01 6 152462343 152462343 G A SYNE1 Missense_Mutation p.T8414M 0.33 possibly_damaging(0.72) TCGA-CV-7250-01 6 155458488 155458488 A G TIAM2 Missense_Mutation p.I458V 0.32 tolerated(0.68) benign(0.193) TCGA-CV-7250-01 6 161159606 161159606 C T PLG Silent p.S613S 0.33 TCGA-CV-7250-01 6 26216840 26216840 G C HIST1H2BG Missense_Mutation p.P11R 0.08 deleterious_low_confidence(0) unknown(0) TCGA-CV-7250-01 6 31084822 31084822 G T CDSN Silent p.S190S 0.49 TCGA-CV-7250-01 6 44217289 44217289 C T HSP90AB1 Missense_Mutation p.S108F 0.12 deleterious(0) probably_damaging(1) TCGA-CV-7250-01 6 54245333 54245333 A T TINAG Silent p.T420T 0.25 TCGA-CV-7250-01 6 70428852 70428852 G C LMBRD1 Nonsense_Mutation p.S253* 0.19 TCGA-CV-7250-01 6 76344481 76344481 C T SENP6 Missense_Mutation p.H138Y 0.29 tolerated(0.09) benign(0.232) TCGA-CV-7250-01 6 90384310 90384310 T C MDN1 Splice_Site p.X4254_splice 0.29 TCGA-CV-7250-01 6 96651512 96651512 G T FUT9 Missense_Mutation p.D161Y 0.39 deleterious(0) probably_damaging(0.986) TCGA-CV-7250-01 7 112407741 112407741 G C TMEM168 Silent p.S535S 0.29 TCGA-CV-7250-01 7 12675756 12675756 T C SCIN Missense_Mutation p.V469A 0.33 deleterious(0) possibly_damaging(0.814) TCGA-CV-7250-01 7 142168472 142168472 G A TRBV5-4 Missense_Mutation p.S84L 0.42 deleterious(0.01) benign(0.333) TCGA-CV-7250-01 7 154172062 154172062 G C DPP6 Missense_Mutation p.V133L 0.44 tolerated(0.75) benign(0.005) TCGA-CV-7250-01 7 158449250 158449250 C T NCAPG2 Silent p.Q736Q 0.11 TCGA-CV-7250-01 7 31124410 31124410 T A ADCYAP1R1 Missense_Mutation p.V166D 0.29 deleterious(0.02) possibly_damaging(0.698) TCGA-CV-7250-01 7 4185403 4185403 C A SDK1 Silent p.T1426T 0.12 TCGA-CV-7250-01 7 50682481 50682481 C A GRB10 Missense_Mutation p.G361W 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-CV-7250-01 7 55220295 55220295 A T EGFR Missense_Mutation p.S229C 0.39 deleterious(0) probably_damaging(0.911) TCGA-CV-7250-01 7 86394583 86394583 T C GRM3 Missense_Mutation p.L41S 0.32 deleterious(0) probably_damaging(0.909) TCGA-CV-7250-01 7 95039308 95039308 G A PON2 Silent p.H200H 0.29 TCGA-CV-7250-01 8 108970481 108970481 C A RSPO2 Missense_Mutation p.G148V 0.32 deleterious(0) probably_damaging(0.993) TCGA-CV-7250-01 8 113326782 113326782 A T CSMD3 Silent p.P2475P 0.28 TCGA-CV-7250-01 8 144808544 144808544 G A FAM83H Silent p.N1029N 0.33 TCGA-CV-7250-01 8 145060329 145060329 C T PARP10 Silent p.E25E 0.17 TCGA-CV-7250-01 8 145746352 145746352 G A LRRC14 Silent p.E324E 0.10 TCGA-CV-7250-01 8 75227563 75227563 G C JPH1 Silent p.R224R 0.09 TCGA-CV-7250-01 9 104449192 104449192 G A GRIN3A Silent p.C330C 0.28 TCGA-CV-7250-01 9 135204921 135204921 G A SETX Silent p.C688C 0.37 TCGA-CV-7250-01 9 136037789 136037789 C T GBGT1 Missense_Mutation p.R4Q 0.24 tolerated_low_confidence(0.07) unknown(0) TCGA-CV-7250-01 9 136234223 136234223 G A SURF4 Silent p.S49S 0.49 TCGA-CV-7250-01 9 137809628 137809628 C T FCN1 Silent p.A30A 0.35 TCGA-CV-7250-01 9 2076291 2076291 C A SMARCA2 Missense_Mutation p.S666R 0.35 possibly_damaging(0.451) TCGA-CV-7250-01 9 27218815 27218815 G T TEK Nonsense_Mutation p.G1035* 0.29 TCGA-CV-7250-01 9 36170744 36170744 C T CCIN Silent p.G415G 0.40 TCGA-CV-7250-01 9 5570152 5570152 T C PDCD1LG2 3'UTR 0.25 TCGA-CV-7250-01 9 77300648 77300648 C A RORB 3'UTR 0.29 TCGA-CV-7250-01 9 79520904 79520904 G T PRUNE2 5'UTR 0.39 TCGA-CV-7250-01 9 82320843 82320843 G C TLE4 Missense_Mutation p.D257H 0.07 deleterious(0) possibly_damaging(0.897) TCGA-CV-7250-01 X 101382277 101382277 G T TCEAL2 Missense_Mutation p.D159Y 0.16 deleterious(0) probably_damaging(0.961) TCGA-CV-7250-01 X 104464103 104464103 G T TEX13A Missense_Mutation p.T258N 0.76 tolerated(0.11) possibly_damaging(0.788) TCGA-CV-7250-01 X 129518927 129518927 G T GPR119 Missense_Mutation p.F165L 0.58 tolerated(0.11) benign(0.044) TCGA-CV-7250-01 X 153588903 153588903 C T FLNA Missense_Mutation p.R1087H 0.26 tolerated(0.09) benign(0.001) TCGA-CV-7250-01 X 26157205 26157205 G A MAGEB18 Missense_Mutation p.G35R 0.25 tolerated(0.15) benign(0.049) TCGA-CV-7250-01 X 41390289 41390289 G A CASK Silent p.L826L 0.68 TCGA-CV-7250-01 X 8433407 8433407 G A VCX3B 5'UTR 0.33 TCGA-CV-7250-01 Y 9305927 9305927 C G TSPY1 Missense_Mutation p.P195A 0.12 tolerated(0.1) possibly_damaging(0.812) TCGA-CV-7252-01 10 101458317 101458317 G A ENTPD7 Missense_Mutation p.S346N 0.28 tolerated(0.13) benign(0.008) TCGA-CV-7252-01 10 102676401 102676401 G C FAM178A Missense_Mutation p.E87Q 0.28 deleterious(0.02) benign(0.039) TCGA-CV-7252-01 10 103826348 103826348 G A HPS6 Missense_Mutation p.G373R 0.13 tolerated(0.08) benign(0.122) TCGA-CV-7252-01 10 113933472 113933472 G A GPAM Missense_Mutation p.S182L 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-CV-7252-01 10 26377303 26377303 C T MYO3A Silent p.L511L 0.10 TCGA-CV-7252-01 10 33199181 33199181 C T ITGB1 Missense_Mutation p.E712K 0.11 tolerated(0.74) benign(0.014) TCGA-CV-7252-01 10 33200509 33200509 C T ITGB1 Missense_Mutation p.E600K 0.16 tolerated(0.69) benign(0.002) TCGA-CV-7252-01 10 51465428 51465428 T C AGAP7 Missense_Mutation p.D343G 0.18 deleterious(0.04) benign(0.038) TCGA-CV-7252-01 10 68687810 68687810 C A LRRTM3 Missense_Mutation p.T379K 0.21 tolerated(0.16) benign(0.082) TCGA-CV-7252-01 10 71631932 71631932 C T COL13A1 Intron 0.18 TCGA-CV-7252-01 10 73515124 73515124 G C C10orf54 Missense_Mutation p.S223C 0.28 deleterious(0) probably_damaging(0.91) TCGA-CV-7252-01 10 73537541 73537541 C T C10orf54 5'Flank 0.24 TCGA-CV-7252-01 11 109294892 109294892 C A C11orf87 Missense_Mutation p.A178E 0.36 tolerated_low_confidence(0.16) benign(0.006) TCGA-CV-7252-01 11 1213299 1213299 C T MUC5AC RNA 0.19 TCGA-CV-7252-01 11 130000002 130000002 C T APLP2 Missense_Mutation p.R509C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-7252-01 11 205338 205338 G A BET1L Silent p.F100F 0.23 TCGA-CV-7252-01 11 35456112 35456112 C T PAMR1 Missense_Mutation p.G542E 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 11 46747651 46747651 G A F2 Missense_Mutation p.D268N 0.14 tolerated(0.08) probably_damaging(1) TCGA-CV-7252-01 11 46958261 46958261 C T C11orf49 5'Flank 0.23 TCGA-CV-7252-01 11 48286331 48286331 G T OR4X1 3'Flank 0.23 TCGA-CV-7252-01 11 55594959 55594959 G A OR5L2 Missense_Mutation p.D89N 0.44 tolerated(0.25) benign(0.037) TCGA-CV-7252-01 11 56258161 56258161 G C OR5M8 Missense_Mutation p.S229C 0.14 deleterious(0.01) possibly_damaging(0.802) TCGA-CV-7252-01 11 56309925 56309925 G T OR5M11 Missense_Mutation p.S270Y 0.24 deleterious(0.01) probably_damaging(0.976) TCGA-CV-7252-01 11 57145249 57145249 G A PRG3 Missense_Mutation p.P190S 0.24 tolerated(0.48) benign(0.026) TCGA-CV-7252-01 11 61084032 61084032 C T DDB1 Nonsense_Mutation p.W411* 0.22 TCGA-CV-7252-01 11 61632693 61632693 G T FADS2 Missense_Mutation p.K409N 0.24 deleterious(0) probably_damaging(0.982) TCGA-CV-7252-01 11 65484420 65484420 C T KAT5 Missense_Mutation p.R411C 0.23 deleterious(0.02) possibly_damaging(0.727) TCGA-CV-7252-01 11 65788061 65788061 G A CATSPER1 Silent p.I655I 0.16 TCGA-CV-7252-01 11 67206332 67206332 G A CORO1B Missense_Mutation p.A385V 0.14 deleterious(0.03) possibly_damaging(0.491) TCGA-CV-7252-01 11 71500886 71500886 C A FAM86C1 Missense_Mutation p.Q52K 0.21 tolerated(0.42) possibly_damaging(0.721) TCGA-CV-7252-01 11 8478907 8478907 T A STK33 Silent p.I226I 0.22 TCGA-CV-7252-01 12 110474131 110474131 G C ANKRD13A Missense_Mutation p.E525D 0.21 tolerated(0.16) benign(0.006) TCGA-CV-7252-01 12 11422583 11422583 C T PRB3 Silent p.S7S 0.20 TCGA-CV-7252-01 12 121947475 121947475 C T KDM2B Silent p.L514L 0.22 TCGA-CV-7252-01 12 12318022 12318022 G A LRP6 Nonsense_Mutation p.R585* 0.26 TCGA-CV-7252-01 12 31605306 31605306 A T DENND5B Silent p.V399V 0.20 TCGA-CV-7252-01 12 43777495 43777495 G A ADAMTS20 Nonsense_Mutation p.R1555* 0.12 TCGA-CV-7252-01 12 46123891 46123892 AG - ARID2 Frame_Shift_Del p.R53Sfs*12 0.21 TCGA-CV-7252-01 12 46245639 46245639 C T ARID2 Nonsense_Mutation p.Q1245* 0.19 TCGA-CV-7252-01 12 49420049 49420049 C T KMT2D Missense_Mutation p.E5234K 0.27 unknown(0) TCGA-CV-7252-01 12 49420671 49420672 - GGTA KMT2D Frame_Shift_Ins p.R5027Tfs*12 0.24 TCGA-CV-7252-01 12 50036990 50036990 C A FMNL3 3'UTR 0.32 TCGA-CV-7252-01 12 52369156 52369156 C T ACVR1B Missense_Mutation p.R67C 0.27 deleterious(0.02) probably_damaging(0.979) TCGA-CV-7252-01 12 54367367 54367367 C A HOXC11 Silent p.L114L 0.22 TCGA-CV-7252-01 12 55356756 55356756 C T TESPA1 Missense_Mutation p.R309K 0.23 tolerated(0.16) benign(0.009) TCGA-CV-7252-01 12 63964555 63964555 G T DPY19L2 Nonsense_Mutation p.Y661* 0.17 TCGA-CV-7252-01 12 72005625 72005625 C G ZFC3H1 Silent p.L1890L 0.22 TCGA-CV-7252-01 12 81110787 81110787 C T MYF5 5'UTR 0.21 TCGA-CV-7252-01 12 85695240 85695240 C T ALX1 Missense_Mutation p.S323L 0.22 deleterious(0) probably_damaging(0.941) TCGA-CV-7252-01 12 9021141 9021141 G A A2ML1 Missense_Mutation p.G1357E 0.28 deleterious(0) probably_damaging(0.998) TCGA-CV-7252-01 13 107219952 107219953 - CTC ARGLU1 In_Frame_Ins p.E105dup 0.20 TCGA-CV-7252-01 13 45768657 45768657 C T KCTD4 Missense_Mutation p.G16R 0.24 tolerated_low_confidence(0.44) probably_damaging(0.979) TCGA-CV-7252-01 13 46632457 46632457 C G CPB2 Missense_Mutation p.E286Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7252-01 13 96205036 96205036 C T CLDN10 Missense_Mutation p.A10V 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-CV-7252-01 14 104142025 104142025 G A KLC1 Splice_Site p.X438_splice 0.19 TCGA-CV-7252-01 14 105843172 105843172 A T PACS2 Missense_Mutation p.Y290F 0.38 tolerated(0.19) benign(0.087) TCGA-CV-7252-01 14 24566131 24566131 C A PCK2 Silent p.G20G 0.19 TCGA-CV-7252-01 14 24845916 24845916 C T NFATC4 Missense_Mutation p.P888S 0.18 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-7252-01 14 35872923 35872923 G A NFKBIA Silent p.F103F 0.15 TCGA-CV-7252-01 14 44975031 44975031 G A FSCB Missense_Mutation p.P387L 0.23 deleterious(0.01) benign(0.008) TCGA-CV-7252-01 14 70634140 70634140 G A SLC8A3 Nonsense_Mutation p.Q334* 0.30 TCGA-CV-7252-01 14 92482133 92482133 G A TRIP11 Nonsense_Mutation p.Q244* 0.14 TCGA-CV-7252-01 14 95035800 95035800 G A SERPINA4 Silent p.A384A 0.32 TCGA-CV-7252-01 15 101447334 101447334 G T ALDH1A3 Silent p.G414G 0.16 TCGA-CV-7252-01 15 34105687 34105687 C T RYR3 Missense_Mutation p.S3470F 0.19 possibly_damaging(0.845) TCGA-CV-7252-01 15 34649146 34649146 G A NUTM1 Silent p.E951E 0.14 TCGA-CV-7252-01 15 35082673 35082673 C G ACTC1 Missense_Mutation p.W358C 0.32 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-CV-7252-01 15 43819190 43819190 C A MAP1A Missense_Mutation p.A1840D 0.28 probably_damaging(0.999) TCGA-CV-7252-01 15 43927989 43927989 C T CATSPER2 Missense_Mutation p.E353K 0.25 tolerated(0.27) benign(0.034) TCGA-CV-7252-01 15 54306178 54306178 G A UNC13C Missense_Mutation p.A360T 0.25 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-CV-7252-01 15 71124454 71124454 C A LARP6 Missense_Mutation p.L471F 0.21 tolerated(0.07) benign(0.394) TCGA-CV-7252-01 15 81230170 81230170 G A KIAA1199 Missense_Mutation p.R1086Q 0.27 tolerated(0.34) benign(0.006) TCGA-CV-7252-01 15 81648086 81648086 C G TMC3 Missense_Mutation p.E305D 0.26 deleterious(0) possibly_damaging(0.521) TCGA-CV-7252-01 16 21181823 21181823 C T TMEM159 Silent p.T54T 0.24 TCGA-CV-7252-01 16 21262063 21262063 G A ANKS4B Silent p.R392R 0.20 TCGA-CV-7252-01 16 30106009 30106009 G A YPEL3 Intron 0.22 TCGA-CV-7252-01 16 30409298 30409298 C T ZNF48 Missense_Mutation p.R243W 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-CV-7252-01 16 30793311 30793311 G A ZNF629 Missense_Mutation p.R780C 0.23 tolerated(0.09) possibly_damaging(0.79) TCGA-CV-7252-01 16 51171359 51171359 G A SALL1 Silent p.F1213F 0.20 TCGA-CV-7252-01 16 52484290 52484290 C T TOX3 Missense_Mutation p.A193T 0.23 tolerated(0.22) benign(0.002) TCGA-CV-7252-01 16 68721545 68721545 C T CDH3 Silent p.I567I 0.25 TCGA-CV-7252-01 16 732456 732456 C T STUB1 Silent p.F293F 0.19 TCGA-CV-7252-01 16 733066 733066 C T JMJD8 Missense_Mutation p.E222K 0.24 tolerated(0.22) benign(0.101) TCGA-CV-7252-01 16 74719469 74719469 C G MLKL Missense_Mutation p.Q245H 0.11 tolerated(0.54) benign(0.001) TCGA-CV-7252-01 16 87636924 87636924 G A JPH3 Missense_Mutation p.G58S 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-7252-01 16 88752818 88752818 C T SNAI3 5'UTR 0.20 TCGA-CV-7252-01 16 89805788 89805788 G A ZNF276 3'Flank 0.29 TCGA-CV-7252-01 17 10348460 10348460 C A MYH4 Missense_Mutation p.A1767S 0.25 tolerated(0.08) benign(0.167) TCGA-CV-7252-01 17 15964844 15964844 C G NCOR1 Missense_Mutation p.E1918Q 0.23 probably_damaging(0.993) TCGA-CV-7252-01 17 1704088 1704088 T C SMYD4 Silent p.E200E 0.22 TCGA-CV-7252-01 17 17700989 17700989 G A RAI1 Missense_Mutation p.R1576H 0.24 deleterious(0.01) possibly_damaging(0.815) TCGA-CV-7252-01 17 26874665 26874665 C T UNC119 Intron 0.30 TCGA-CV-7252-01 17 28706100 28706100 C G CPD Missense_Mutation p.I34M 0.38 deleterious_low_confidence(0.04) benign(0.092) TCGA-CV-7252-01 17 37761719 37761719 C A NEUROD2 Silent p.A378A 0.29 TCGA-CV-7252-01 17 38245491 38245491 G C THRA Missense_Mutation p.E339Q 0.17 deleterious(0.01) benign(0.323) TCGA-CV-7252-01 17 40986892 40986892 G A PSME3 Missense_Mutation p.G81D 0.22 tolerated(0.6) possibly_damaging(0.474) TCGA-CV-7252-01 17 41006513 41006513 C A AOC3 Missense_Mutation p.A550D 0.26 tolerated(0.2) benign(0.242) TCGA-CV-7252-01 17 6665481 6665481 A G XAF1 Silent p.R143R 0.28 TCGA-CV-7252-01 17 72741414 72741414 G A RAB37 Intron 0.33 TCGA-CV-7252-01 17 7578267 7578268 - AG TP53 Frame_Shift_Ins p.I195Lfs*53 0.23 TCGA-CV-7252-01 17 7579533 7579533 G A TP53 Nonsense_Mutation p.Q52* 0.26 TCGA-CV-7252-01 17 79207394 79207394 G A ENTHD2 Intron 0.25 TCGA-CV-7252-01 17 961286 961286 C T ABR Splice_Site p.X436_splice 0.23 TCGA-CV-7252-01 18 2891362 2891362 G A EMILIN2 Missense_Mutation p.D413N 0.15 deleterious(0.04) benign(0.063) TCGA-CV-7252-01 18 54423844 54423844 C T WDR7 Silent p.L674L 0.20 TCGA-CV-7252-01 19 10444126 10444126 C T RAVER1 Missense_Mutation p.E37K 0.32 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-CV-7252-01 19 12474424 12474424 C G ZNF442 Missense_Mutation p.D8H 0.18 tolerated_low_confidence(0.12) benign(0.058) TCGA-CV-7252-01 19 12491594 12491594 G A CTD-3105H18.14 3'UTR 0.25 TCGA-CV-7252-01 19 13928082 13928082 G A ZSWIM4 Silent p.G411G 0.27 TCGA-CV-7252-01 19 19744918 19744929 CGGCGGCCGCAG - GMIP In_Frame_Del p.L719_P722del 0.16 TCGA-CV-7252-01 19 36218454 36218474 GGGCCTGCGCCAGGTGCTCCA - KMT2B In_Frame_Del p.R1414_L1420del 0.17 TCGA-CV-7252-01 19 36228844 36228844 G C KMT2B Splice_Site p.X2581_splice 0.41 TCGA-CV-7252-01 19 37413631 37413631 G C ZNF568 5'UTR 0.10 TCGA-CV-7252-01 19 4037462 4037462 G A PIAS4 Silent p.K411K 0.18 TCGA-CV-7252-01 19 40704316 40704316 C T MAP3K10 Silent p.L239L 0.24 TCGA-CV-7252-01 19 40739814 40739814 G A AKT2 Missense_Mutation p.P471S 0.26 tolerated(0.08) benign(0.036) TCGA-CV-7252-01 19 44611712 44611712 C T ZNF224 Missense_Mutation p.R467W 0.22 tolerated(0.35) benign(0.002) TCGA-CV-7252-01 19 46443312 46443312 C T NOVA2 Missense_Mutation p.V430M 0.24 deleterious(0) probably_damaging(0.963) TCGA-CV-7252-01 19 50374957 50374957 C T AKT1S1 Silent p.E178E 0.25 TCGA-CV-7252-01 19 51192464 51192464 C T SHANK1 Silent p.R679R 0.11 TCGA-CV-7252-01 19 54618738 54618738 A G TFPT 5'UTR 0.08 TCGA-CV-7252-01 19 54664964 54664964 G A TMC4 Missense_Mutation p.R580C 0.29 deleterious(0) probably_damaging(0.984) TCGA-CV-7252-01 19 5733907 5733907 C T CATSPERD Missense_Mutation p.S106L 0.19 tolerated(0.06) benign(0.059) TCGA-CV-7252-01 19 58152875 58152875 T C ZNF211 Missense_Mutation p.Y406H 0.21 tolerated(0.06) benign(0.217) TCGA-CV-7252-01 19 7809868 7809868 C T CD209 Missense_Mutation p.V287M 0.17 tolerated(0.15) benign(0.077) TCGA-CV-7252-01 19 9061995 9061995 G A MUC16 Missense_Mutation p.S8484F 0.25 unknown(0) TCGA-CV-7252-01 1 109812163 109812163 G A CELSR2 Silent p.E2310E 0.17 TCGA-CV-7252-01 1 11579445 11579445 G T PTCHD2 Silent p.L641L 0.26 TCGA-CV-7252-01 1 1273500 1273500 G A DVL1 Missense_Mutation p.P499L 0.29 deleterious(0.02) unknown(0) TCGA-CV-7252-01 1 155903485 155903485 T C KIAA0907 Missense_Mutation p.K65R 0.19 tolerated(0.11) benign(0.031) TCGA-CV-7252-01 1 156756531 156756531 G A PRCC Silent p.K216K 0.22 TCGA-CV-7252-01 1 160769734 160769734 C T LY9 Nonsense_Mutation p.R106* 0.15 TCGA-CV-7252-01 1 16456829 16456829 C T EPHA2 Nonsense_Mutation p.W854* 0.22 TCGA-CV-7252-01 1 16475160 16475161 - A EPHA2 Frame_Shift_Ins p.Y179Lfs*35 0.19 TCGA-CV-7252-01 1 183177126 183177126 C A LAMC2 Missense_Mutation p.H64N 0.28 tolerated(0.66) possibly_damaging(0.688) TCGA-CV-7252-01 1 196303052 196303052 A G KCNT2 Missense_Mutation p.I641T 0.25 tolerated(0.15) benign(0.015) TCGA-CV-7252-01 1 197390489 197390489 G A CRB1 Missense_Mutation p.A511T 0.32 tolerated(1) benign(0.015) TCGA-CV-7252-01 1 198713291 198713291 G A PTPRC Missense_Mutation p.D936N 0.22 tolerated(0.12) possibly_damaging(0.562) TCGA-CV-7252-01 1 200842300 200842300 C G GPR25 Silent p.L45L 0.20 TCGA-CV-7252-01 1 200954056 200954056 C T KIF21B Missense_Mutation p.R1245Q 0.19 tolerated(0.14) benign(0.435) TCGA-CV-7252-01 1 202097163 202097163 C T GPR37L1 Missense_Mutation p.R309C 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 1 205631061 205631061 G A SLC45A3 Silent p.L384L 0.17 TCGA-CV-7252-01 1 21031314 21031314 G A KIF17 Missense_Mutation p.T250I 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7252-01 1 210637846 210637846 C T HHAT Intron 0.27 TCGA-CV-7252-01 1 228468382 228468382 C T OBSCN Silent p.F3123F 0.19 TCGA-CV-7252-01 1 233489592 233489592 C T MLK4 Silent p.V342V 0.22 TCGA-CV-7252-01 1 248201622 248201622 C A OR2L2 Missense_Mutation p.P18Q 0.23 tolerated(0.16) benign(0.024) TCGA-CV-7252-01 1 27277199 27277199 C A C1orf172 Missense_Mutation p.R363L 0.22 deleterious(0) probably_damaging(0.998) TCGA-CV-7252-01 1 27278782 27278783 AT - C1orf172 Frame_Shift_Del p.Y30* 0.22 TCGA-CV-7252-01 1 40131889 40131889 A G NT5C1A Missense_Mutation p.V52A 0.16 deleterious(0) benign(0.066) TCGA-CV-7252-01 1 43630439 43630439 C A EBNA1BP2 Missense_Mutation p.G304C 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 1 44441472 44441472 G T ATP6V0B Missense_Mutation p.G23V 0.23 tolerated(0.54) benign(0.209) TCGA-CV-7252-01 1 57209833 57209833 C T C1orf168 Silent p.R498R 0.22 TCGA-CV-7252-01 1 62960063 62960063 T C DOCK7 Silent p.E1669E 0.23 TCGA-CV-7252-01 1 70900825 70900825 G C CTH Missense_Mutation p.E339D 0.29 deleterious(0) possibly_damaging(0.688) TCGA-CV-7252-01 1 89729518 89729518 C A GBP5 Missense_Mutation p.K421N 0.26 tolerated(0.1) benign(0.042) TCGA-CV-7252-01 1 91845680 91845680 C A HFM1 Missense_Mutation p.L329F 0.12 tolerated(0.66) benign(0.006) TCGA-CV-7252-01 20 1433208 1433208 G A NSFL1C Missense_Mutation p.R241W 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7252-01 20 1895762 1895762 G A SIRPA Missense_Mutation p.E33K 0.34 tolerated(0.06) possibly_damaging(0.462) TCGA-CV-7252-01 20 23731395 23731395 C T CST1 Missense_Mutation p.A37T 0.18 deleterious(0.04) possibly_damaging(0.534) TCGA-CV-7252-01 20 23856724 23856724 G T CST5 3'UTR 0.35 TCGA-CV-7252-01 20 34596243 34596243 A G CNBD2 Missense_Mutation p.K332R 0.24 tolerated(0.19) benign(0.031) TCGA-CV-7252-01 20 35075135 35075135 G - DLGAP4 Frame_Shift_Del p.A482Pfs*73 0.28 TCGA-CV-7252-01 20 40049688 40049688 G A CHD6 Missense_Mutation p.H1863Y 0.21 deleterious_low_confidence(0.03) benign(0.002) TCGA-CV-7252-01 20 44515635 44515635 G A SPATA25 Nonsense_Mutation p.Q69* 0.20 TCGA-CV-7252-01 20 57429461 57429461 C G GNAS Missense_Mutation p.P381A 0.38 tolerated_low_confidence(0.12) unknown(0) TCGA-CV-7252-01 20 61598820 61598820 G A SLC17A9 Missense_Mutation p.V427M 0.22 tolerated(0.06) benign(0.213) TCGA-CV-7252-01 20 62493551 62493551 G A ABHD16B Missense_Mutation p.A220T 0.36 deleterious(0.03) probably_damaging(0.991) TCGA-CV-7252-01 20 853537 853537 C T ANGPT4 3'UTR 0.24 TCGA-CV-7252-01 21 15561401 15561401 G T LIPI Missense_Mutation p.T150N 0.12 deleterious(0) probably_damaging(0.986) TCGA-CV-7252-01 21 30318479 30318479 G A LTN1 Silent p.F1252F 0.15 TCGA-CV-7252-01 21 34011425 34011425 G A SYNJ1 Silent p.F1275F 0.20 TCGA-CV-7252-01 21 44324169 44324169 G T NDUFV3 Silent p.L349L 0.21 TCGA-CV-7252-01 22 21332000 21332000 G A AIFM3 Missense_Mutation p.A432T 0.35 tolerated(0.51) benign(0.363) TCGA-CV-7252-01 22 38823608 38823608 C T KCNJ4 Missense_Mutation p.R177Q 0.14 tolerated(0.54) possibly_damaging(0.714) TCGA-CV-7252-01 2 10729194 10729194 A T NOL10 Missense_Mutation p.S607T 0.45 tolerated(0.57) benign(0.002) TCGA-CV-7252-01 2 108881304 108881304 G C SULT1C3 Missense_Mutation p.K215N 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7252-01 2 110962526 110962526 C A NPHP1 Missense_Mutation p.R7L 0.10 deleterious(0.01) possibly_damaging(0.854) TCGA-CV-7252-01 2 160832579 160832579 C T PLA2R1 Silent p.A865A 0.38 TCGA-CV-7252-01 2 170917856 170917856 C T UBR3 Missense_Mutation p.S1641F 0.36 deleterious(0.02) benign(0.429) TCGA-CV-7252-01 2 171243774 171243774 C G MYO3B Missense_Mutation p.I511M 0.28 deleterious(0) possibly_damaging(0.612) TCGA-CV-7252-01 2 171243784 171243784 C G MYO3B Missense_Mutation p.L515V 0.31 deleterious(0) probably_damaging(0.996) TCGA-CV-7252-01 2 202149546 202149551 GACCAC - CASP8 In_Frame_Del p.T331_T332del 0.37 TCGA-CV-7252-01 2 210543343 210543343 G T MAP2 Missense_Mutation p.A104S 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-7252-01 2 234354353 234354353 C T DGKD Nonsense_Mutation p.Q427* 0.40 TCGA-CV-7252-01 2 240036972 240036972 G A HDAC4 Missense_Mutation p.P518L 0.37 tolerated(0.06) benign(0.139) TCGA-CV-7252-01 2 26500001 26500001 A G HADHB Missense_Mutation p.I139V 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7252-01 2 31805805 31805805 G T SRD5A2 RNA 0.64 TCGA-CV-7252-01 2 39494353 39494353 T C MAP4K3 Missense_Mutation p.K670R 0.43 tolerated(0.08) benign(0.083) TCGA-CV-7252-01 2 68520989 68520989 C A CNRIP1 3'UTR 0.26 TCGA-CV-7252-01 2 74328683 74328683 G A TET3 Missense_Mutation p.E1455K 0.29 tolerated(0.68) benign(0.081) TCGA-CV-7252-01 2 75720729 75720729 G A EVA1A Missense_Mutation p.P31L 0.45 deleterious(0.04) probably_damaging(1) TCGA-CV-7252-01 2 89339865 89339865 C A IGKV1-12 Silent p.L69L 0.19 TCGA-CV-7252-01 2 89619868 89619868 G A IGKV1-39 5'UTR 0.15 TCGA-CV-7252-01 3 151154847 151154847 C G IGSF10 Missense_Mutation p.R2501T 0.21 tolerated(0.06) possibly_damaging(0.906) TCGA-CV-7252-01 3 160135570 160135570 G A SMC4 Missense_Mutation p.M499I 0.19 deleterious(0.03) benign(0.017) TCGA-CV-7252-01 3 30713559 30713559 C G TGFBR2 Nonsense_Mutation p.S320* 0.32 TCGA-CV-7252-01 3 52283691 52283691 C G PPM1M Nonsense_Mutation p.S202* 0.22 TCGA-CV-7252-01 3 89448639 89448639 T G EPHA3 Intron 0.30 TCGA-CV-7252-01 4 104579540 104579540 G A TACR3 Missense_Mutation p.P190L 0.19 deleterious(0) possibly_damaging(0.797) TCGA-CV-7252-01 4 110790844 110790844 G A LRIT3 Missense_Mutation p.M313I 0.16 tolerated(1) benign(0.002) TCGA-CV-7252-01 4 153273934 153273934 G C FBXW7 Intron 0.25 TCGA-CV-7252-01 4 187534466 187534467 - G FAT1 Frame_Shift_Ins p.R3087Pfs*2 0.15 TCGA-CV-7252-01 4 187539457 187539469 CTTCAGTCTCCCG - FAT1 Frame_Shift_Del p.G2758Wfs*32 0.27 TCGA-CV-7252-01 4 189068147 189068147 G T TRIML1 Missense_Mutation p.W343L 0.14 deleterious(0) possibly_damaging(0.744) TCGA-CV-7252-01 4 38828928 38828928 G C TLR6 Missense_Mutation p.L723V 0.29 deleterious(0.03) benign(0.025) TCGA-CV-7252-01 4 46930480 46930480 C T GABRA4 Missense_Mutation p.R476H 0.23 tolerated_low_confidence(0.66) benign(0.001) TCGA-CV-7252-01 4 56820513 56820513 C G CEP135 Missense_Mutation p.Q146E 0.33 deleterious(0) probably_damaging(0.997) TCGA-CV-7252-01 4 76861372 76861372 G A NAAA Intron 0.24 TCGA-CV-7252-01 5 131819732 131819732 C T IRF1 Missense_Mutation p.D297N 0.20 deleterious(0.01) possibly_damaging(0.628) TCGA-CV-7252-01 5 131820066 131820066 C G IRF1 Missense_Mutation p.D281H 0.17 deleterious(0) possibly_damaging(0.735) TCGA-CV-7252-01 5 131820143 131820143 C T IRF1 Missense_Mutation p.G255E 0.13 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 5 131820153 131820153 C T IRF1 Missense_Mutation p.D252N 0.13 tolerated(0.59) benign(0.367) TCGA-CV-7252-01 5 141335106 141335106 G A PCDH12 Nonsense_Mutation p.Q771* 0.15 TCGA-CV-7252-01 5 147889016 147889016 C T HTR4 Intron 0.20 TCGA-CV-7252-01 5 154214195 154214195 G A FAXDC2 Silent p.L78L 0.23 TCGA-CV-7252-01 5 169805750 169805750 C T KCNMB1 Silent p.V178V 0.20 TCGA-CV-7252-01 5 176306459 176306459 G A UNC5A Missense_Mutation p.R778Q 0.20 tolerated(0.34) possibly_damaging(0.673) TCGA-CV-7252-01 5 176734658 176734658 G A MXD3 Silent p.A184A 0.20 TCGA-CV-7252-01 5 32088220 32088220 G A PDZD2 Missense_Mutation p.E1556K 0.30 deleterious(0) probably_damaging(0.998) TCGA-CV-7252-01 5 38933124 38933124 C T OSMR Missense_Mutation p.L840F 0.21 tolerated(0.13) possibly_damaging(0.894) TCGA-CV-7252-01 5 54329783 54329783 G C GZMK 3'UTR 0.30 TCGA-CV-7252-01 5 76645309 76645309 C T PDE8B Silent p.L314L 0.26 TCGA-CV-7252-01 5 94830705 94830705 C T TTC37 Missense_Mutation p.G1218E 0.15 deleterious(0.01) probably_damaging(1) TCGA-CV-7252-01 6 110567452 110567452 G A METTL24 Silent p.L266L 0.23 TCGA-CV-7252-01 6 111693797 111693797 A G REV3L Splice_Site p.X1920_splice 0.21 TCGA-CV-7252-01 6 112506519 112506519 C T LAMA4 Missense_Mutation p.A333T 0.18 tolerated(0.61) benign(0.001) TCGA-CV-7252-01 6 112508752 112508752 A G LAMA4 Missense_Mutation p.L289P 0.32 tolerated(0.23) probably_damaging(0.926) TCGA-CV-7252-01 6 116938138 116938138 C T RSPH4A Missense_Mutation p.P118S 0.22 tolerated_low_confidence(0.36) benign(0.006) TCGA-CV-7252-01 6 117709162 117709162 C T ROS1 Missense_Mutation p.E599K 0.26 tolerated_low_confidence(0.97) benign(0.002) TCGA-CV-7252-01 6 123332247 123332247 C T CLVS2 Silent p.F169F 0.16 TCGA-CV-7252-01 6 142764560 142764560 G C GPR126 Missense_Mutation p.D1221H 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 6 152443564 152443564 G T SYNE1 3'UTR 0.26 TCGA-CV-7252-01 6 168434601 168434601 C T KIF25 Silent p.S69S 0.19 TCGA-CV-7252-01 6 26388333 26388333 C T BTN2A2 Missense_Mutation p.L179F 0.20 tolerated(0.18) benign(0.296) TCGA-CV-7252-01 6 27368900 27368900 T C ZNF391 Missense_Mutation p.C251R 0.11 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 6 27839651 27839651 G A HIST1H3I 3'UTR 0.20 TCGA-CV-7252-01 6 28540086 28540086 G A SCAND3 Missense_Mutation p.P1194S 0.17 tolerated_low_confidence(0.07) benign(0.081) TCGA-CV-7252-01 6 33164363 33164363 G A RXRB Missense_Mutation p.R281W 0.13 deleterious(0) probably_damaging(0.977) TCGA-CV-7252-01 6 34496436 34496436 C T PACSIN1 Silent p.L80L 0.21 TCGA-CV-7252-01 6 34507170 34507170 G A SPDEF Missense_Mutation p.S229L 0.16 deleterious(0.05) benign(0.001) TCGA-CV-7252-01 6 46108043 46108043 C T ENPP4 Silent p.T241T 0.21 TCGA-CV-7252-01 6 51921548 51921548 G A PKHD1 Silent p.C547C 0.23 TCGA-CV-7252-01 6 52317592 52317592 C T EFHC1 Missense_Mutation p.S227L 0.19 deleterious(0) benign(0.394) TCGA-CV-7252-01 6 90660231 90660231 C G BACH2 Missense_Mutation p.G532R 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 7 100276155 100276155 C T GNB2 Silent p.F278F 0.27 TCGA-CV-7252-01 7 100280033 100280033 C T GIGYF1 Silent p.L891L 0.13 TCGA-CV-7252-01 7 101559408 101559408 C A CUX1 Missense_Mutation p.A26D 0.21 deleterious(0) unknown(0) TCGA-CV-7252-01 7 117375087 117375087 G A CTTNBP2 Silent p.A1252A 0.11 TCGA-CV-7252-01 7 127669962 127669962 G C LRRC4 Silent p.L244L 0.29 TCGA-CV-7252-01 7 127670131 127670131 G C LRRC4 Missense_Mutation p.S188C 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-7252-01 7 127670193 127670193 G A LRRC4 Silent p.F167F 0.20 TCGA-CV-7252-01 7 139801957 139801957 C T KDM7A Missense_Mutation p.E478K 0.28 tolerated(0.24) possibly_damaging(0.53) TCGA-CV-7252-01 7 142206550 142206550 C T TRBV10-2 Missense_Mutation p.R102H 0.26 tolerated(0.13) benign(0.004) TCGA-CV-7252-01 7 148112633 148112633 G A CNTNAP2 Silent p.A1307A 0.18 TCGA-CV-7252-01 7 148515125 148515125 G A EZH2 Missense_Mutation p.R362W 0.19 deleterious(0) possibly_damaging(0.828) TCGA-CV-7252-01 7 33296932 33296932 C T BBS9 Missense_Mutation p.P176L 0.28 deleterious(0) probably_damaging(0.998) TCGA-CV-7252-01 7 55221821 55221821 G A EGFR Missense_Mutation p.A289T 0.17 deleterious(0) probably_damaging(0.981) TCGA-CV-7252-01 7 62752012 62752012 C T ZNF733P RNA 0.11 TCGA-CV-7252-01 7 65439597 65439597 G A GUSB Missense_Mutation p.P387L 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 7 71177168 71177168 G A WBSCR17 3'UTR 0.18 TCGA-CV-7252-01 7 76950665 76950665 G A GSAP Missense_Mutation p.S660F 0.19 deleterious(0.03) possibly_damaging(0.739) TCGA-CV-7252-01 7 80141221 80141221 C T GNAT3 Missense_Mutation p.E8K 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-CV-7252-01 7 97617811 97617811 G A OCM2 Silent p.S37S 0.24 TCGA-CV-7252-01 7 99001128 99001128 C T PDAP1 Missense_Mutation p.E36K 0.19 tolerated(0.42) benign(0.011) TCGA-CV-7252-01 8 121267542 121267542 G A COL14A1 Nonsense_Mutation p.W939* 0.26 TCGA-CV-7252-01 8 143695543 143695543 C G ARC Missense_Mutation p.Q30H 0.17 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-CV-7252-01 8 143746149 143746149 C T JRK RNA 0.29 TCGA-CV-7252-01 8 144297245 144297245 G A GPIHBP1 Missense_Mutation p.C136Y 0.26 deleterious(0) probably_damaging(0.951) TCGA-CV-7252-01 8 145763114 145763114 C G ARHGAP39 Missense_Mutation p.E869Q 0.24 deleterious(0.02) benign(0.192) TCGA-CV-7252-01 8 19231062 19231062 A G SH2D4A Silent p.T313T 0.26 TCGA-CV-7252-01 8 19362961 19362961 C A CSGALNACT1 Missense_Mutation p.D129Y 0.24 deleterious(0.01) possibly_damaging(0.595) TCGA-CV-7252-01 8 27289833 27289833 G A PTK2B Silent p.E314E 0.18 TCGA-CV-7252-01 8 37823854 37823854 G A ADRB3 Missense_Mutation p.A45V 0.24 tolerated(0.12) probably_damaging(0.997) TCGA-CV-7252-01 8 6794389 6794389 G T DEFA4 Silent p.L11L 0.18 TCGA-CV-7252-01 8 99039681 99039681 C T MATN2 Silent p.I660I 0.24 TCGA-CV-7252-01 9 111705013 111705013 C T CTNNAL1 3'UTR 0.42 TCGA-CV-7252-01 9 126136903 126136903 C T CRB2 Silent p.L1145L 0.41 TCGA-CV-7252-01 9 131084816 131084816 G A TRUB2 5'UTR 0.35 TCGA-CV-7252-01 9 133932455 133932455 G A LAMC3 Silent p.R693R 0.24 TCGA-CV-7252-01 9 21455940 21455940 C G MIR31HG RNA 0.60 TCGA-CV-7252-01 9 74489807 74489807 C A ABHD17B Missense_Mutation p.D64Y 0.09 deleterious(0) possibly_damaging(0.729) TCGA-CV-7252-01 X 107377334 107377334 A C ATG4A Missense_Mutation p.I114L 0.42 deleterious(0) benign(0.083) TCGA-CV-7252-01 X 108708626 108708626 C G GUCY2F Missense_Mutation p.Q259H 0.27 deleterious(0) possibly_damaging(0.771) TCGA-CV-7252-01 X 117526618 117526618 G C WDR44 Missense_Mutation p.E70D 0.21 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-CV-7252-01 X 122767863 122767863 C T THOC2 Missense_Mutation p.E693K 0.16 deleterious(0) benign(0.176) TCGA-CV-7252-01 X 150573632 150573632 C T VMA21 3'UTR 0.40 TCGA-CV-7252-01 X 153128177 153128177 C T L1CAM Missense_Mutation p.G1239R 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7252-01 X 154292277 154292277 G A CMC4 Nonsense_Mutation p.Q8* 0.18 TCGA-CV-7252-01 X 17744773 17744773 G A NHS Silent p.P828P 0.16 TCGA-CV-7252-01 X 38009042 38009042 G A SRPX Silent p.F439F 0.27 TCGA-CV-7252-01 X 43652760 43652760 C A MAOB Silent p.L278L 0.28 TCGA-CV-7252-01 X 48891046 48891046 C T TFE3 Missense_Mutation p.R357H 0.32 deleterious(0) possibly_damaging(0.812) TCGA-CV-7252-01 X 57618953 57618953 G A ZXDB Missense_Mutation p.A158T 0.27 tolerated(0.19) benign(0.003) TCGA-CV-7252-01 X 69253320 69253320 G A EDA Missense_Mutation p.R289H 0.22 deleterious_low_confidence(0) benign(0.206) TCGA-CV-7252-01 X 69458111 69458111 C A AWAT1 Silent p.G170G 0.28 TCGA-CV-7252-01 X 71351044 71351044 C T RGAG4 Missense_Mutation p.G116E 0.30 tolerated_low_confidence(0.11) benign(0.116) TCGA-CV-7252-01 X 76937979 76937979 C A ATRX Missense_Mutation p.K923N 0.15 probably_damaging(0.996) TCGA-CV-7253-01 10 102247816 102247816 C A SEC31B Nonsense_Mutation p.E1110* 0.33 TCGA-CV-7253-01 10 114194142 114194142 A T ZDHHC6 Missense_Mutation p.F272L 0.08 tolerated(0.69) benign(0.001) TCGA-CV-7253-01 10 115341746 115341746 G A HABP2 Missense_Mutation p.G317D 0.06 deleterious(0) probably_damaging(0.998) TCGA-CV-7253-01 10 120802159 120802159 G T EIF3A Missense_Mutation p.P958H 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7253-01 10 121436667 121436667 A G BAG3 Missense_Mutation p.K534R 0.24 deleterious(0.04) unknown(0) TCGA-CV-7253-01 10 50678456 50678456 T C ERCC6 Missense_Mutation p.K1184E 0.40 deleterious(0.03) probably_damaging(0.915) TCGA-CV-7253-01 10 76789017 76789017 G A KAT6B Missense_Mutation p.V1479I 0.32 benign(0.002) TCGA-CV-7253-01 10 8097767 8097767 T A GATA3 Missense_Mutation p.L50H 0.67 deleterious(0) possibly_damaging(0.849) TCGA-CV-7253-01 10 93244188 93244188 A T HECTD2 Intron 0.30 TCGA-CV-7253-01 10 95931086 95931086 C G PLCE1 Missense_Mutation p.R548G 0.32 tolerated(0.07) probably_damaging(0.993) TCGA-CV-7253-01 11 1256320 1256320 G A MUC5B Missense_Mutation p.C879Y 0.38 unknown(0) TCGA-CV-7253-01 11 132812997 132812997 C T OPCML 5'UTR 0.28 TCGA-CV-7253-01 11 19077367 19077367 A C MRGPRX2 Missense_Mutation p.F195V 0.55 tolerated(0.09) possibly_damaging(0.596) TCGA-CV-7253-01 11 45937775 45937776 - A PEX16 Intron 0.11 TCGA-CV-7253-01 11 56230584 56230584 C A OR5M9 Missense_Mutation p.Q98H 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-7253-01 11 63137735 63137735 A T SLC22A9 Missense_Mutation p.Q69H 0.20 tolerated(0.13) benign(0.013) TCGA-CV-7253-01 11 6631495 6631495 G C ILK Missense_Mutation p.E399Q 0.44 tolerated(0.11) probably_damaging(0.984) TCGA-CV-7253-01 11 67412541 67412541 C T ACY3 Silent p.L203L 0.34 TCGA-CV-7253-01 12 102155370 102155370 G C GNPTAB Missense_Mutation p.R963G 0.38 deleterious(0) probably_damaging(0.999) TCGA-CV-7253-01 12 105282861 105282861 A T SLC41A2 Missense_Mutation p.L277H 0.30 deleterious(0) probably_damaging(0.99) TCGA-CV-7253-01 12 121013686 121013686 C T RNF10 Silent p.S764S 0.41 TCGA-CV-7253-01 12 122181639 122181639 G A TMEM120B Silent p.K58K 0.42 TCGA-CV-7253-01 12 124377980 124377980 C T DNAH10 Missense_Mutation p.P2948S 0.35 probably_damaging(0.993) TCGA-CV-7253-01 12 13238169 13238169 C A GSG1 Missense_Mutation p.W229L 0.24 deleterious(0) probably_damaging(0.967) TCGA-CV-7253-01 12 2760859 2760859 C A CACNA1C Silent p.V1381V 0.36 TCGA-CV-7253-01 12 3686072 3686072 A G PRMT8 Missense_Mutation p.I250V 0.06 tolerated(0.06) benign(0.013) TCGA-CV-7253-01 12 50135983 50135983 G T TMBIM6 Missense_Mutation p.V22L 0.24 deleterious_low_confidence(0) benign(0.198) TCGA-CV-7253-01 12 50535844 50535844 G A CERS5 Missense_Mutation p.L162F 0.36 deleterious(0) probably_damaging(0.93) TCGA-CV-7253-01 12 51590624 51590624 C T POU6F1 Translation_Start_Site p.M1? 0.06 deleterious_low_confidence(0.02) benign(0.019) TCGA-CV-7253-01 12 53878059 53878059 C T MAP3K12 Silent p.E410E 0.26 TCGA-CV-7253-01 12 9020506 9020506 C G A2ML1 Missense_Mutation p.I1262M 0.41 deleterious(0.01) benign(0.122) TCGA-CV-7253-01 12 93196253 93196253 G C EEA1 Missense_Mutation p.S866C 0.33 deleterious(0) possibly_damaging(0.827) TCGA-CV-7253-01 13 114839224 114839225 - A RASA3 Frame_Shift_Ins p.R49Qfs*20 0.21 TCGA-CV-7253-01 13 115002175 115002175 G T CDC16 Splice_Site p.X35_splice 0.29 TCGA-CV-7253-01 13 27649390 27649390 T C USP12 Silent p.S290S 0.27 TCGA-CV-7253-01 13 32798467 32798468 - C FRY Frame_Shift_Ins p.L1623Pfs*3 0.31 TCGA-CV-7253-01 13 37678354 37678354 C G CSNK1A1L 3'UTR 0.30 TCGA-CV-7253-01 13 38160349 38160349 G T POSTN Silent p.P274P 0.26 TCGA-CV-7253-01 13 39588614 39588614 C G PROSER1 Splice_Site p.X259_splice 0.26 TCGA-CV-7253-01 13 41891057 41891057 G T NAA16 Nonsense_Mutation p.E44* 0.30 TCGA-CV-7253-01 14 106452764 106452764 C T IGHV1-2 Silent p.R86R 0.26 TCGA-CV-7253-01 14 23777304 23777304 A C BCL2L2-PABPN1 Missense_Mutation p.S110R 0.43 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-CV-7253-01 14 24880367 24880367 G T NYNRIN Missense_Mutation p.V834L 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-7253-01 14 33015409 33015409 C T AKAP6 Missense_Mutation p.S517L 0.36 deleterious(0) benign(0.146) TCGA-CV-7253-01 14 44975866 44975866 G T FSCB Missense_Mutation p.P109T 0.31 deleterious(0.01) probably_damaging(0.982) TCGA-CV-7253-01 14 91642340 91642340 G T C14orf159 Missense_Mutation p.G224W 0.36 deleterious(0) probably_damaging(0.998) TCGA-CV-7253-01 15 22383155 22383155 C A OR4N4 Missense_Mutation p.A228E 0.10 deleterious(0.04) benign(0.001) TCGA-CV-7253-01 15 44941138 44941138 T A SPG11 Missense_Mutation p.S510C 0.25 deleterious(0.02) probably_damaging(0.987) TCGA-CV-7253-01 15 44941194 44941195 AG - SPG11 Frame_Shift_Del p.L491Dfs*66 0.26 TCGA-CV-7253-01 15 77907870 77907870 G A LINGO1 Missense_Mutation p.R127C 0.34 deleterious(0) possibly_damaging(0.85) TCGA-CV-7253-01 15 78894291 78894291 G T CHRNA3 Silent p.I231I 0.44 TCGA-CV-7253-01 15 81225737 81225737 G A KIAA1199 Missense_Mutation p.R982Q 0.30 tolerated(0.14) possibly_damaging(0.533) TCGA-CV-7253-01 16 31485728 31485728 G T TGFB1I1 Missense_Mutation p.E157D 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-7253-01 16 3722789 3722789 C T TRAP1 Silent p.L359L 0.29 TCGA-CV-7253-01 16 57994742 57994742 A G CNGB1 Splice_Site p.X178_splice 0.32 TCGA-CV-7253-01 16 58572083 58572083 C T CNOT1 Silent p.Q1741Q 0.22 TCGA-CV-7253-01 16 65038544 65038544 C A CDH11 Splice_Site p.X76_splice 0.53 TCGA-CV-7253-01 16 67650762 67650762 G T CTCF Missense_Mutation p.C356F 0.38 deleterious(0) possibly_damaging(0.795) TCGA-CV-7253-01 16 68265188 68265188 T A ESRP2 Missense_Mutation p.E535V 0.34 deleterious(0.02) possibly_damaging(0.628) TCGA-CV-7253-01 17 11554533 11554533 G T DNAH9 Missense_Mutation p.V749F 0.07 benign(0.345) TCGA-CV-7253-01 17 18075505 18075505 C T MYO15A Silent p.S3417S 0.11 TCGA-CV-7253-01 17 1945365 1945365 G A OVCA2 Silent p.R8R 0.75 TCGA-CV-7253-01 17 27426719 27426719 C T MYO18A Missense_Mutation p.R1190K 0.29 tolerated(0.32) benign(0.003) TCGA-CV-7253-01 17 27857580 27857580 A T TAOK1 Missense_Mutation p.L768F 0.43 deleterious(0) possibly_damaging(0.814) TCGA-CV-7253-01 17 32483076 32483076 C T ASIC2 Missense_Mutation p.R159H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-7253-01 17 3419860 3419860 C T TRPV3 Missense_Mutation p.A697T 0.50 deleterious(0.02) possibly_damaging(0.691) TCGA-CV-7253-01 17 3977538 3977538 A G ZZEF1 Silent p.D1197D 0.55 TCGA-CV-7253-01 17 41056042 41056043 TG - G6PC Frame_Shift_Del p.C109* 0.25 TCGA-CV-7253-01 17 48548429 48548429 C T ACSF2 Missense_Mutation p.A419V 0.39 tolerated(0.07) benign(0.047) TCGA-CV-7253-01 17 48694921 48694921 G C CACNA1G Missense_Mutation p.R1715P 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7253-01 17 5009729 5009729 G T ZNF232 Nonsense_Mutation p.S242* 0.67 TCGA-CV-7253-01 17 56355336 56355336 G T MPO Missense_Mutation p.N352K 0.25 tolerated(0.47) benign(0) TCGA-CV-7253-01 17 73485427 73485427 A G KIAA0195 Missense_Mutation p.H282R 0.12 tolerated(0.79) benign(0) TCGA-CV-7253-01 17 7577126 7577126 T A TP53 Missense_Mutation p.E271V 0.62 deleterious(0) probably_damaging(0.999) TCGA-CV-7253-01 17 80350347 80350347 C A OGFOD3 3'UTR 0.19 TCGA-CV-7253-01 17 80350348 80350348 C A OGFOD3 3'UTR 0.19 TCGA-CV-7253-01 18 13057679 13057679 C T CEP192 Missense_Mutation p.R1402C 0.77 deleterious(0) benign(0.424) TCGA-CV-7253-01 18 21534710 21534710 C A LAMA3 3'UTR 0.10 TCGA-CV-7253-01 18 44424058 44424058 C A PIAS2 Nonsense_Mutation p.E334* 0.53 TCGA-CV-7253-01 19 11096928 11096928 C A SMARCA4 Missense_Mutation p.S140Y 0.57 benign(0.102) TCGA-CV-7253-01 19 13862531 13862531 G T CCDC130 5'UTR 0.35 TCGA-CV-7253-01 19 16034706 16034706 G A CYP4F11 Silent p.L278L 0.43 TCGA-CV-7253-01 19 17918965 17918965 C T B3GNT3 Missense_Mutation p.P117S 0.22 deleterious(0.01) probably_damaging(1) TCGA-CV-7253-01 19 19130026 19130026 C T SUGP2 Missense_Mutation p.R581Q 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7253-01 19 22363996 22363996 C A ZNF676 Missense_Mutation p.G175C 0.44 deleterious(0.01) possibly_damaging(0.492) TCGA-CV-7253-01 19 30936598 30936598 C A ZNF536 Missense_Mutation p.A710D 0.06 tolerated(0.15) probably_damaging(0.998) TCGA-CV-7253-01 19 36853054 36853054 C T ZFP14 Silent p.R32R 0.12 TCGA-CV-7253-01 19 39899199 39899199 C A ZFP36 Missense_Mutation p.P287T 0.23 tolerated(0.18) possibly_damaging(0.717) TCGA-CV-7253-01 19 40886277 40886277 G A HIPK4 Nonsense_Mutation p.R541* 0.33 TCGA-CV-7253-01 19 50046458 50046458 C T RCN3 Silent p.H325H 0.28 TCGA-CV-7253-01 19 50105149 50105149 C T PRR12 Missense_Mutation p.R1583C 0.11 unknown(0) TCGA-CV-7253-01 19 56539846 56539846 C T NLRP5 Silent p.S749S 0.06 TCGA-CV-7253-01 19 58238941 58238941 C T ZNF671 5'UTR 0.49 TCGA-CV-7253-01 19 9082378 9082378 C G MUC16 Missense_Mutation p.S3146T 0.50 unknown(0) TCGA-CV-7253-01 1 103364525 103364525 T C COL11A1 Missense_Mutation p.E1371G 0.36 unknown(0) TCGA-CV-7253-01 1 109795741 109795743 CTT - CELSR2 In_Frame_Del p.L1014del 0.24 TCGA-CV-7253-01 1 111726202 111726203 TT - CEPT1 Frame_Shift_Del p.I375Sfs*8 0.21 TCGA-CV-7253-01 1 111824244 111824244 C T CHIAP2 RNA 0.42 TCGA-CV-7253-01 1 117644264 117644264 C A TTF2 3'UTR 0.10 TCGA-CV-7253-01 1 147091476 147091476 C T BCL9 Silent p.H505H 0.30 TCGA-CV-7253-01 1 152732519 152732519 A T KPRP Missense_Mutation p.N152I 0.31 deleterious(0.04) benign(0.009) TCGA-CV-7253-01 1 153745728 153745728 G A INTS3 Silent p.V1037V 0.36 TCGA-CV-7253-01 1 154316484 154316484 G T ATP8B2 Missense_Mutation p.R658L 0.33 deleterious(0) probably_damaging(0.996) TCGA-CV-7253-01 1 155895555 155895555 C A KIAA0907 Missense_Mutation p.G254V 0.29 deleterious(0) probably_damaging(1) TCGA-CV-7253-01 1 156348086 156348086 C T RHBG Missense_Mutation p.A190V 0.05 deleterious(0) possibly_damaging(0.805) TCGA-CV-7253-01 1 160969992 160969992 T A F11R Missense_Mutation p.S179C 0.41 deleterious(0.01) benign(0.236) TCGA-CV-7253-01 1 165737484 165737484 G A TMCO1 Silent p.Y82Y 0.39 TCGA-CV-7253-01 1 166892037 166892037 G C ILDR2 Missense_Mutation p.T335S 0.31 tolerated(0.45) possibly_damaging(0.614) TCGA-CV-7253-01 1 167868789 167868789 C T ADCY10 Missense_Mutation p.V172M 0.31 deleterious(0) probably_damaging(1) TCGA-CV-7253-01 1 175372692 175372692 C - TNR Frame_Shift_Del p.G187Afs*78 0.11 TCGA-CV-7253-01 1 178442393 178442393 G T RASAL2 3'UTR 0.41 TCGA-CV-7253-01 1 183923934 183923934 C G COLGALT2 Missense_Mutation p.V331L 0.44 tolerated(0.55) benign(0.002) TCGA-CV-7253-01 1 186645174 186645174 A C PTGS2 Nonsense_Mutation p.Y371* 0.42 TCGA-CV-7253-01 1 196648779 196648779 A G CFH Missense_Mutation p.I216V 0.26 tolerated(0.29) benign(0.009) TCGA-CV-7253-01 1 200978555 200978555 G A KIF21B Missense_Mutation p.P35S 0.06 tolerated(0.06) probably_damaging(0.995) TCGA-CV-7253-01 1 201196111 201196111 G T IGFN1 Nonsense_Mutation p.E3630* 0.40 TCGA-CV-7253-01 1 203134630 203134630 C T ADORA1 Missense_Mutation p.L195F 0.23 deleterious(0.04) benign(0.096) TCGA-CV-7253-01 1 2330854 2330854 G A RER1 Missense_Mutation p.G63S 0.08 deleterious(0.02) probably_damaging(1) TCGA-CV-7253-01 1 241032090 241032090 T A RGS7 Silent p.A171A 0.08 TCGA-CV-7253-01 1 25573139 25573139 G A C1orf63 Missense_Mutation p.R106W 0.10 deleterious(0.01) unknown(0) TCGA-CV-7253-01 1 25810763 25810763 C A TMEM57 Missense_Mutation p.N437K 0.25 deleterious(0.04) possibly_damaging(0.842) TCGA-CV-7253-01 1 36213644 36213666 CAGACAGTTTCCCTGAACTCTGG - CLSPN Splice_Site p.X825_splice 0.23 TCGA-CV-7253-01 1 86146537 86146537 G T ZNHIT6 Missense_Mutation p.A357D 0.19 deleterious(0.01) probably_damaging(0.934) TCGA-CV-7253-01 20 21695398 21695398 T - PAX1 Frame_Shift_Del p.Y522Ifs*6 0.21 TCGA-CV-7253-01 20 2451426 2451426 C A SNRPB 5'UTR 0.29 TCGA-CV-7253-01 20 30904034 30904034 A C KIF3B Missense_Mutation p.K473T 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7253-01 20 56189965 56189965 T C ZBP1 Silent p.K160K 0.31 TCGA-CV-7253-01 20 9391725 9391725 G T PLCB4 Nonsense_Mutation p.G669* 0.24 TCGA-CV-7253-01 21 11026773 11026773 G T BAGE2 RNA 0.12 TCGA-CV-7253-01 21 11039387 11039387 C G BAGE2 RNA 0.05 TCGA-CV-7253-01 21 31744004 31744004 T A KRTAP13-2 Nonstop_Mutation p.*176Cext*14 0.07 TCGA-CV-7253-01 21 43166897 43166898 - A RIPK4 Frame_Shift_Ins p.V237Gfs*37 0.09 TCGA-CV-7253-01 22 41605465 41605465 A C L3MBTL2 Intron 0.22 TCGA-CV-7253-01 22 41924682 41924682 C T ACO2 3'UTR 0.33 TCGA-CV-7253-01 2 128394185 128394185 C T MYO7B Silent p.L2037L 0.32 TCGA-CV-7253-01 2 131521973 131521973 G A AMER3 Silent p.Q776Q 0.28 TCGA-CV-7253-01 2 141115638 141115638 A C LRP1B Missense_Mutation p.C3769G 0.38 possibly_damaging(0.537) TCGA-CV-7253-01 2 152520126 152520126 T C NEB Missense_Mutation p.Y1900C 0.20 probably_damaging(1) TCGA-CV-7253-01 2 160028631 160028631 G T TANC1 Splice_Site p.X451_splice 0.34 TCGA-CV-7253-01 2 179604400 179604400 A G TTN Silent p.T4520T 0.27 TCGA-CV-7253-01 2 207509209 207509209 G A AC010731.4 RNA 0.31 TCGA-CV-7253-01 2 217002844 217002844 A C XRCC5 Missense_Mutation p.E428D 0.38 deleterious(0) probably_damaging(0.955) TCGA-CV-7253-01 2 220417282 220417282 C T OBSL1 Missense_Mutation p.A1762T 0.24 tolerated(0.5) benign(0.232) TCGA-CV-7253-01 2 220424011 220424011 C T OBSL1 Silent p.E1054E 0.21 TCGA-CV-7253-01 2 228563937 228563937 G A SLC19A3 Missense_Mutation p.A165V 0.34 tolerated(0.08) benign(0.382) TCGA-CV-7253-01 2 233321697 233321697 G C ALPI Missense_Mutation p.G130A 0.08 deleterious(0.01) probably_damaging(0.959) TCGA-CV-7253-01 2 235949783 235949783 A G SH3BP4 Missense_Mutation p.M124V 0.30 tolerated(0.18) benign(0.004) TCGA-CV-7253-01 2 241657475 241657475 C T KIF1A Silent p.G1775G 0.21 TCGA-CV-7253-01 2 27804830 27804830 C A C2orf16 Missense_Mutation p.S1797R 0.08 tolerated(0.7) unknown(0) TCGA-CV-7253-01 2 30379615 30379615 C T YPEL5 Missense_Mutation p.T33I 0.13 deleterious(0.03) probably_damaging(0.939) TCGA-CV-7253-01 2 44145429 44145429 T A LRPPRC Missense_Mutation p.E1002V 0.24 tolerated(0.14) benign(0) TCGA-CV-7253-01 2 56419698 56419698 G A CCDC85A Silent p.R121R 0.23 TCGA-CV-7253-01 2 68772424 68772424 C G APLF Silent p.P422P 0.11 TCGA-CV-7253-01 2 86075251 86075251 A T ST3GAL5 Nonsense_Mutation p.L132* 0.38 TCGA-CV-7253-01 2 89399357 89399357 A T IGKV1-16 Missense_Mutation p.Y116N 0.39 tolerated(0.18) benign(0.002) TCGA-CV-7253-01 3 152163264 152163264 A C MBNL1 Missense_Mutation p.K248T 0.49 deleterious(0) probably_damaging(0.999) TCGA-CV-7253-01 3 168807903 168807903 T C MECOM Missense_Mutation p.I973V 0.15 tolerated(0.45) benign(0.001) TCGA-CV-7253-01 3 186571026 186571026 G A ADIPOQ Missense_Mutation p.G60D 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7253-01 3 38442394 38442394 G A XYLB Missense_Mutation p.G484E 0.50 tolerated(0.5) benign(0.001) TCGA-CV-7253-01 3 49756364 49756364 C T AMIGO3 Missense_Mutation p.G179S 0.56 tolerated(0.09) possibly_damaging(0.889) TCGA-CV-7253-01 3 53842766 53842766 C T CACNA1D Missense_Mutation p.T1967M 0.13 deleterious_low_confidence(0) possibly_damaging(0.752) TCGA-CV-7253-01 4 71698926 71698926 C T GRSF1 Silent p.R193R 0.23 TCGA-CV-7253-01 4 72222834 72222834 C A SLC4A4 Missense_Mutation p.N220K 0.22 tolerated(0.94) benign(0.439) TCGA-CV-7253-01 4 77662554 77662554 C T SHROOM3 Silent p.P1076P 0.50 TCGA-CV-7253-01 5 10286575 10286580 TTGTTT - CMBL In_Frame_Del p.K118_Q119del 0.23 TCGA-CV-7253-01 5 118445852 118445852 G A DMXL1 Missense_Mutation p.R124H 0.28 deleterious(0) possibly_damaging(0.776) TCGA-CV-7253-01 5 124080411 124080411 G C ZNF608 Missense_Mutation p.S91C 0.06 deleterious(0.01) possibly_damaging(0.621) TCGA-CV-7253-01 5 128983577 128983577 C T ADAMTS19 Silent p.R658R 0.32 TCGA-CV-7253-01 5 130897676 130897676 T A RAPGEF6 Missense_Mutation p.I116F 0.25 deleterious(0) benign(0.005) TCGA-CV-7253-01 5 140564246 140564246 G A PCDHB16 Silent p.S704S 0.05 TCGA-CV-7253-01 5 156820116 156820116 G A CYFIP2 3'UTR 0.46 TCGA-CV-7253-01 5 160758103 160758103 G C GABRB2 Missense_Mutation p.I288M 0.34 deleterious(0) probably_damaging(1) TCGA-CV-7253-01 5 176638656 176638662 AGTAAAG - NSD1 Frame_Shift_Del p.S1086Rfs*6 0.78 TCGA-CV-7253-01 5 21975279 21975279 T A CDH12 Missense_Mutation p.K149N 0.06 deleterious(0.02) probably_damaging(1) TCGA-CV-7253-01 5 33576945 33576945 C T ADAMTS12 Silent p.L1062L 0.36 TCGA-CV-7253-01 5 34880347 34880347 G T TTC23L Missense_Mutation p.E337D 0.26 tolerated(0.8) benign(0.004) TCGA-CV-7253-01 5 54277890 54277890 C T ESM1 Missense_Mutation p.C129Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-CV-7253-01 5 72469320 72469320 A T TMEM174 Missense_Mutation p.T84S 0.34 tolerated(0.07) probably_damaging(0.994) TCGA-CV-7253-01 5 94936601 94936601 C T ARSK Missense_Mutation p.P383S 0.37 tolerated(0.07) benign(0.262) TCGA-CV-7253-01 6 108395812 108395812 G T OSTM1 Missense_Mutation p.P15Q 0.43 tolerated_low_confidence(0.12) benign(0.053) TCGA-CV-7253-01 6 109819090 109819090 T C AK9 Missense_Mutation p.R1709G 0.45 deleterious(0) benign(0.37) TCGA-CV-7253-01 6 127911377 127911377 A G C6orf58 Missense_Mutation p.T274A 0.58 tolerated(0.06) benign(0.044) TCGA-CV-7253-01 6 13365330 13365330 G A GFOD1 Missense_Mutation p.P273L 0.67 tolerated(0.33) benign(0.001) TCGA-CV-7253-01 6 150240749 150240749 C A RAET1G Missense_Mutation p.V97L 0.24 tolerated(0.18) benign(0.038) TCGA-CV-7253-01 6 152542128 152542128 A G SYNE1 Missense_Mutation p.L7237P 0.35 probably_damaging(0.987) TCGA-CV-7253-01 6 32041664 32041664 T C RNA5SP206 3'Flank 0.26 TCGA-CV-7253-01 6 35088707 35088707 C A TCP11 Nonsense_Mutation p.E245* 0.25 TCGA-CV-7253-01 6 38843395 38843395 C T DNAH8 Missense_Mutation p.P2333L 0.86 benign(0.442) TCGA-CV-7253-01 6 41899233 41899233 C T BYSL Silent p.L268L 0.28 TCGA-CV-7253-01 6 42996851 42996851 T A RRP36 Missense_Mutation p.L222Q 0.40 deleterious(0) probably_damaging(1) TCGA-CV-7253-01 6 43618143 43618143 C A RSPH9 Missense_Mutation p.P87T 0.14 deleterious(0.02) probably_damaging(0.958) TCGA-CV-7253-01 6 55304315 55304315 C T HMGCLL1 Missense_Mutation p.G310S 0.47 deleterious(0) probably_damaging(0.984) TCGA-CV-7253-01 6 56997899 56997899 A C ZNF451 Missense_Mutation p.T162P 0.23 tolerated(0.38) benign(0.037) TCGA-CV-7253-01 6 96053864 96053864 T C MANEA Silent p.F324F 0.59 TCGA-CV-7253-01 6 99883592 99883592 T C USP45 Silent p.%3D 0.60 TCGA-CV-7253-01 7 101845472 101845472 C A CUX1 Silent p.I976I 0.09 TCGA-CV-7253-01 7 103123326 103123326 A G RELN Missense_Mutation p.V3425A 0.22 deleterious(0) probably_damaging(0.989) TCGA-CV-7253-01 7 103163863 103163863 C T RELN Missense_Mutation p.G2489R 0.40 deleterious(0) probably_damaging(1) TCGA-CV-7253-01 7 134878366 134878366 T G WDR91 Missense_Mutation p.N485T 0.24 tolerated(0.83) possibly_damaging(0.642) TCGA-CV-7253-01 7 142961250 142961250 G A GSTK1 Missense_Mutation p.M48I 0.44 tolerated(0.06) benign(0.011) TCGA-CV-7253-01 7 16415830 16415830 C T ISPD Missense_Mutation p.V191I 0.34 tolerated(1) benign(0.001) TCGA-CV-7253-01 7 31682803 31682803 G C CCDC129 Missense_Mutation p.D633H 0.31 deleterious(0) probably_damaging(0.984) TCGA-CV-7253-01 7 38389104 38389104 T C TRGV5 Missense_Mutation p.D69G 0.44 deleterious(0.03) probably_damaging(0.953) TCGA-CV-7253-01 7 64438979 64438979 T A ZNF117 Nonsense_Mutation p.K324* 0.36 TCGA-CV-7253-01 7 69064922 69064922 A C AUTS2 Missense_Mutation p.S95R 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-CV-7253-01 7 87022283 87022283 G T CROT Missense_Mutation p.V568F 0.41 deleterious(0) probably_damaging(0.976) TCGA-CV-7253-01 8 11180420 11180420 C T MTMR9 3'UTR 0.23 TCGA-CV-7253-01 8 113657362 113657362 T A CSMD3 Missense_Mutation p.T1096S 0.20 deleterious(0.01) possibly_damaging(0.545) TCGA-CV-7253-01 8 116616583 116616584 - A TRPS1 Frame_Shift_Ins p.C538Lfs*5 0.38 TCGA-CV-7253-01 8 140631071 140631071 G C KCNK9 Missense_Mutation p.S185R 0.32 tolerated(0.07) benign(0.378) TCGA-CV-7253-01 8 24772151 24772151 A G NEFM Missense_Mutation p.D282G 0.11 tolerated(0.32) unknown(0) TCGA-CV-7253-01 8 27779108 27779108 C T SCARA5 Missense_Mutation p.R299Q 0.20 tolerated(0.06) benign(0.344) TCGA-CV-7253-01 8 3059180 3059180 G A CSMD1 Silent p.T1684T 0.37 TCGA-CV-7253-01 8 81553638 81553638 C G ZNF704 Missense_Mutation p.C401S 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7253-01 8 8560453 8560453 C T CLDN23 Missense_Mutation p.A182V 0.46 tolerated(0.5) benign(0.038) TCGA-CV-7253-01 8 99015907 99015907 T A MATN2 Missense_Mutation p.L408Q 0.11 tolerated(0.59) benign(0.439) TCGA-CV-7253-01 9 111617533 111617533 C T ACTL7B Silent p.G226G 0.22 TCGA-CV-7253-01 9 113169571 113169571 C A SVEP1 Missense_Mutation p.C2770F 0.08 probably_damaging(1) TCGA-CV-7253-01 9 178994 178994 T A CBWD1 5'UTR 0.59 TCGA-CV-7253-01 9 34506628 34506628 A G DNAI1 Missense_Mutation p.D356G 0.14 deleterious(0) possibly_damaging(0.643) TCGA-CV-7253-01 9 35060329 35060329 A C VCP Missense_Mutation p.V559G 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7253-01 9 38016101 38016101 G A SHB Missense_Mutation p.P249S 0.35 deleterious(0) probably_damaging(0.998) TCGA-CV-7253-01 9 74319658 74319658 G A TMEM2 Missense_Mutation p.P1016L 0.42 deleterious(0) probably_damaging(0.966) TCGA-CV-7253-01 9 98678056 98678056 C T ERCC6L2 Missense_Mutation p.L310F 0.22 tolerated(0.05) probably_damaging(1) TCGA-CV-7253-01 X 101857289 101857289 A T ARMCX5 Missense_Mutation p.T74S 0.51 tolerated(0.11) benign(0.122) TCGA-CV-7253-01 X 107413937 107413937 C G COL4A6 Missense_Mutation p.G1133A 0.21 probably_damaging(0.998) TCGA-CV-7253-01 X 120182629 120182629 C A GLUD2 Missense_Mutation p.A364E 0.72 deleterious(0.02) probably_damaging(0.982) TCGA-CV-7253-01 X 130222849 130222849 G T ARHGAP36 3'UTR 0.29 TCGA-CV-7253-01 X 44942704 44942704 G A KDM6A Splice_Site p.X1095_splice 0.80 TCGA-CV-7253-01 X 70674608 70674608 T C TAF1 Silent p.T1633T 0.81 TCGA-CV-7254-01 10 102267289 102267289 T A SEC31B Silent p.I225I 0.23 TCGA-CV-7254-01 10 105349976 105349976 C T NEURL1 Silent p.C524C 0.16 TCGA-CV-7254-01 10 112039820 112039820 C T MXI1 Missense_Mutation p.S234L 0.16 deleterious(0.01) probably_damaging(0.976) TCGA-CV-7254-01 10 114053774 114053774 C T TECTB Missense_Mutation p.S209L 0.28 deleterious(0) possibly_damaging(0.813) TCGA-CV-7254-01 10 118896129 118896129 G A VAX1 Silent p.L95L 0.23 TCGA-CV-7254-01 10 15688977 15688977 G T ITGA8 Missense_Mutation p.Q359K 0.15 tolerated(0.24) benign(0.021) TCGA-CV-7254-01 10 24896427 24896427 C T ARHGAP21 Splice_Site p.X895_splice 0.09 TCGA-CV-7254-01 10 26939503 26939503 C A LINC00202-2 RNA 0.13 TCGA-CV-7254-01 10 37508752 37508752 A T ANKRD30A Missense_Mutation p.E1315V 0.29 deleterious(0.01) possibly_damaging(0.788) TCGA-CV-7254-01 10 50532083 50532083 G C C10orf71 Missense_Mutation p.S498T 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-CV-7254-01 10 70450631 70450631 G T TET1 Missense_Mutation p.S1824I 0.15 deleterious(0.04) benign(0.113) TCGA-CV-7254-01 10 70847958 70847958 T C SRGN Silent p.L15L 0.19 TCGA-CV-7254-01 10 7808047 7808047 C G KIN Missense_Mutation p.R273T 0.12 deleterious(0.03) benign(0.021) TCGA-CV-7254-01 10 81915641 81915641 T A ANXA11 Missense_Mutation p.I496F 0.23 deleterious(0.02) probably_damaging(0.944) TCGA-CV-7254-01 10 91193071 91193071 T A SLC16A12 Missense_Mutation p.D434V 0.20 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 10 97916167 97916167 A C ZNF518A RNA 0.18 TCGA-CV-7254-01 11 102477389 102477389 A G MMP20 Missense_Mutation p.L277P 0.20 tolerated(1) benign(0.001) TCGA-CV-7254-01 11 111593425 111593425 C T SIK2 Nonsense_Mutation p.Q698* 0.26 TCGA-CV-7254-01 11 11373824 11373824 C T CSNK2A3 Nonsense_Mutation p.W281* 0.14 TCGA-CV-7254-01 11 124180027 124180027 T C OR8D1 Silent p.L212L 0.28 TCGA-CV-7254-01 11 124632034 124632034 C A ESAM Missense_Mutation p.G6V 0.20 tolerated_low_confidence(0.07) benign(0.255) TCGA-CV-7254-01 11 132016211 132016211 G T NTM Missense_Mutation p.W68L 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 11 15262059 15262059 T G INSC Missense_Mutation p.V534G 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 11 17428485 17428485 C T ABCC8 Missense_Mutation p.D1038N 0.25 deleterious(0.04) benign(0.021) TCGA-CV-7254-01 11 21135210 21135210 G T NELL1 Missense_Mutation p.R459L 0.28 tolerated(0.64) benign(0.033) TCGA-CV-7254-01 11 489914 489914 T C PTDSS2 Missense_Mutation p.W383R 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 11 51515649 51515649 C A OR4C46 Missense_Mutation p.A123D 0.23 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-CV-7254-01 11 5255583 5255583 C A HBD Missense_Mutation p.E27D 0.29 tolerated(0.06) possibly_damaging(0.56) TCGA-CV-7254-01 11 5443979 5443979 C A OR51Q1 Missense_Mutation p.H183Q 0.22 deleterious(0.02) probably_damaging(1) TCGA-CV-7254-01 11 55595286 55595286 C A OR5L2 Missense_Mutation p.L198M 0.22 tolerated(0.15) benign(0.113) TCGA-CV-7254-01 11 5602224 5602224 C G OR52B6 Missense_Mutation p.L40V 0.10 deleterious(0) benign(0.433) TCGA-CV-7254-01 11 56409156 56409156 C A OR5AP2 Missense_Mutation p.V254F 0.20 deleterious(0.01) probably_damaging(1) TCGA-CV-7254-01 11 57155327 57155327 T C PRG2 Silent p.R170R 0.35 TCGA-CV-7254-01 11 59245073 59245073 G T OR4D10 Silent p.T57T 0.19 TCGA-CV-7254-01 11 59939584 59939584 T C MS4A6A 3'Flank 0.22 TCGA-CV-7254-01 11 6462161 6462161 C A HPX Silent p.L11L 0.12 TCGA-CV-7254-01 11 6629415 6629415 C A ILK Missense_Mutation p.H77N 0.10 deleterious(0.03) probably_damaging(0.943) TCGA-CV-7254-01 11 6662065 6662065 G A DCHS1 Silent p.Y260Y 0.12 TCGA-CV-7254-01 11 6662629 6662629 C G DCHS1 Silent p.T72T 0.33 TCGA-CV-7254-01 11 77920009 77920009 G T USP35 Missense_Mutation p.R531L 0.10 deleterious(0) unknown(0) TCGA-CV-7254-01 11 82571102 82571102 C A PRCP Missense_Mutation p.D97Y 0.12 deleterious(0) possibly_damaging(0.907) TCGA-CV-7254-01 11 8704301 8704301 C A RPL27A 5'UTR 0.18 TCGA-CV-7254-01 11 92088407 92088407 C A FAT3 Missense_Mutation p.F1043L 0.18 probably_damaging(0.97) TCGA-CV-7254-01 12 100603865 100603865 G T ACTR6 Missense_Mutation p.A132S 0.12 tolerated(0.22) probably_damaging(0.996) TCGA-CV-7254-01 12 105428104 105428104 T A ALDH1L2 Missense_Mutation p.I740F 0.12 deleterious(0) probably_damaging(0.911) TCGA-CV-7254-01 12 107254088 107254088 G T RIC8B Missense_Mutation p.G450V 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 12 113314582 113314582 C A RPH3A Missense_Mutation p.A361E 0.14 tolerated(0.41) benign(0.169) TCGA-CV-7254-01 12 113645284 113645284 C T IQCD Missense_Mutation p.E230K 0.08 tolerated(0.12) benign(0.426) TCGA-CV-7254-01 12 12334103 12334103 T C LRP6 Missense_Mutation p.N416S 0.09 deleterious(0.01) possibly_damaging(0.893) TCGA-CV-7254-01 12 126135284 126135284 T C TMEM132B Missense_Mutation p.S562P 0.20 deleterious(0.01) possibly_damaging(0.742) TCGA-CV-7254-01 12 130827590 130827590 A T PIWIL1 Missense_Mutation p.E45V 0.15 tolerated(0.13) benign(0.018) TCGA-CV-7254-01 12 14018732 14018732 C T GRIN2B Silent p.K137K 0.45 TCGA-CV-7254-01 12 31944920 31944920 G A H3F3C Missense_Mutation p.L61F 0.37 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-CV-7254-01 12 49420184 49420184 C T KMT2D Missense_Mutation p.G5189R 0.18 unknown(0) TCGA-CV-7254-01 12 49722998 49722998 C - TROAP Frame_Shift_Del p.M360Cfs*43 0.13 TCGA-CV-7254-01 12 53011886 53011886 G C KRT73 Missense_Mutation p.N141K 0.25 deleterious(0.02) benign(0.116) TCGA-CV-7254-01 12 56092549 56092549 G C ITGA7 Missense_Mutation p.R319G 0.13 tolerated(0.75) benign(0.219) TCGA-CV-7254-01 12 76791671 76791671 C T OSBPL8 Missense_Mutation p.G159S 0.23 tolerated(0.07) probably_damaging(1) TCGA-CV-7254-01 12 8048329 8048329 C A NANOGP1 RNA 0.15 TCGA-CV-7254-01 12 81719651 81719651 T A PPFIA2 Splice_Site p.X850_splice 0.10 TCGA-CV-7254-01 12 83290168 83290168 C G TMTC2 Missense_Mutation p.T409R 0.14 deleterious(0) possibly_damaging(0.809) TCGA-CV-7254-01 12 91449952 91449952 G C KERA Missense_Mutation p.T36S 0.11 tolerated(0.83) benign(0) TCGA-CV-7254-01 13 32812117 32812117 G T FRY Missense_Mutation p.A2138S 0.18 tolerated(0.95) benign(0.016) TCGA-CV-7254-01 13 33701605 33701605 C G STARD13 Silent p.T609T 0.50 TCGA-CV-7254-01 13 39343779 39343793 AGTGCAGTTCAACCC - FREM2 In_Frame_Del p.V1826_P1830del 0.26 TCGA-CV-7254-01 13 39435695 39435695 A T FREM2 Silent p.I2549I 0.24 TCGA-CV-7254-01 13 46726918 46726918 C T LCP1 Missense_Mutation p.E246K 0.19 deleterious(0.03) benign(0.003) TCGA-CV-7254-01 14 106092271 106092271 C G IGHG4 Missense_Mutation p.A45P 0.12 deleterious(0.02) benign(0.04) TCGA-CV-7254-01 14 20295661 20295661 C A OR4N2 Silent p.T18T 0.12 TCGA-CV-7254-01 14 22192489 22192489 G T TRAV3 Missense_Mutation p.K88N 0.15 deleterious(0.02) benign(0.229) TCGA-CV-7254-01 14 23609700 23609700 C T SLC7A8 Silent p.E256E 0.13 TCGA-CV-7254-01 14 30103722 30103722 G T PRKD1 Missense_Mutation p.L406I 0.15 deleterious(0) probably_damaging(0.967) TCGA-CV-7254-01 14 36003680 36003680 G T INSM2 Silent p.G74G 0.69 TCGA-CV-7254-01 14 37283178 37283178 G T SLC25A21 Missense_Mutation p.P50T 0.11 tolerated(0.07) possibly_damaging(0.58) TCGA-CV-7254-01 14 93673339 93673339 T A C14orf142 Missense_Mutation p.Q15L 0.39 deleterious(0.03) benign(0.004) TCGA-CV-7254-01 14 96937852 96937852 A G AK7 Silent p.K465K 0.11 TCGA-CV-7254-01 15 33944987 33944987 G A RYR3 Missense_Mutation p.R1404Q 0.17 probably_damaging(0.929) TCGA-CV-7254-01 15 43815441 43815443 GAA - MAP1A In_Frame_Del p.K591del 0.11 TCGA-CV-7254-01 15 54306702 54306702 C T UNC13C Silent p.L534L 0.10 TCGA-CV-7254-01 15 55838897 55838897 A T PYGO1 Missense_Mutation p.V195D 0.32 tolerated(0.22) benign(0.073) TCGA-CV-7254-01 15 58724316 58724316 C G LIPC Missense_Mutation p.P29A 0.18 tolerated(0.67) benign(0.005) TCGA-CV-7254-01 15 64455212 64455212 G A PPIB 5'UTR 0.14 TCGA-CV-7254-01 15 65491007 65491007 G C CILP Silent p.L539L 0.18 TCGA-CV-7254-01 15 79382664 79382664 G A RASGRF1 Silent p.S59S 0.07 TCGA-CV-7254-01 15 82933969 82933969 C T GOLGA6L18 Missense_Mutation p.E449K 0.67 deleterious_low_confidence(0) benign(0.316) TCGA-CV-7254-01 15 86940669 86940669 G T AGBL1 Missense_Mutation p.G770V 0.22 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 15 88472442 88472442 A T NTRK3 Missense_Mutation p.Y705N 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 15 91304239 91304239 G C BLM Missense_Mutation p.E546Q 0.09 tolerated(0.13) possibly_damaging(0.467) TCGA-CV-7254-01 15 93540258 93540258 A G CHD2 Missense_Mutation p.I1223V 0.07 tolerated(0.12) benign(0.001) TCGA-CV-7254-01 16 2522435 2522435 G C NTN3 Missense_Mutation p.A245P 0.12 deleterious(0) possibly_damaging(0.533) TCGA-CV-7254-01 16 30776589 30776589 G A RNF40 Missense_Mutation p.E287K 0.13 tolerated(0.29) benign(0.023) TCGA-CV-7254-01 16 56865903 56865903 A T NUP93 Missense_Mutation p.D412V 0.15 deleterious(0) possibly_damaging(0.823) TCGA-CV-7254-01 16 67425061 67425061 C A TPPP3 5'UTR 0.32 TCGA-CV-7254-01 16 703573 703573 C A WDR90 Missense_Mutation p.Q428K 0.20 deleterious(0) probably_damaging(0.93) TCGA-CV-7254-01 16 715788 715788 A G WDR90 Missense_Mutation p.Q1474R 0.09 deleterious(0) probably_damaging(0.968) TCGA-CV-7254-01 16 72984464 72984464 G C ZFHX3 Silent p.L1040L 0.42 TCGA-CV-7254-01 16 81298334 81298334 C T BCMO1 Silent p.S187S 0.22 TCGA-CV-7254-01 16 89764695 89764695 C T SPATA2L Missense_Mutation p.V108M 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 17 18542504 18542504 C G TBC1D28 Missense_Mutation p.S61T 0.41 tolerated(1) benign(0.024) TCGA-CV-7254-01 17 26822750 26822750 C T SLC13A2 Silent p.I511I 0.32 TCGA-CV-7254-01 17 38179592 38179592 G T MED24 Missense_Mutation p.T681K 0.34 tolerated(0.09) benign(0.069) TCGA-CV-7254-01 17 40825796 40825796 G A PLEKHH3 Nonsense_Mutation p.R119* 0.58 TCGA-CV-7254-01 17 42930947 42930947 G T EFTUD2 Missense_Mutation p.H802N 0.09 tolerated(0.18) benign(0.082) TCGA-CV-7254-01 17 48941307 48941307 A G TOB1 Silent p.R24R 0.10 TCGA-CV-7254-01 17 4910344 4910344 C A KIF1C Missense_Mutation p.Q434K 0.21 tolerated(0.98) benign(0.001) TCGA-CV-7254-01 17 5323591 5323591 T C RPAIN Missense_Mutation p.W21R 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 17 5323592 5323592 G T RPAIN Missense_Mutation p.W21L 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 17 56271376 56271376 G C EPX Missense_Mutation p.A173P 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-CV-7254-01 17 56772501 56772501 A - RAD51C Frame_Shift_Del p.T120Qfs*21 0.34 TCGA-CV-7254-01 17 61949409 61949409 A G CSH2 3'UTR 0.29 TCGA-CV-7254-01 17 72469713 72469713 C A CD300A Missense_Mutation p.P27T 0.15 tolerated(1) benign(0.011) TCGA-CV-7254-01 17 74271917 74271917 G A QRICH2 Missense_Mutation p.S1656L 0.26 tolerated(1) benign(0.001) TCGA-CV-7254-01 17 7478055 7478055 A G EIF4A1 Intron 0.44 TCGA-CV-7254-01 17 7577508 7577508 T G TP53 Missense_Mutation p.E258A 0.32 deleterious(0) probably_damaging(0.998) TCGA-CV-7254-01 17 78226588 78226588 A G SLC26A11 3'UTR 0.14 TCGA-CV-7254-01 17 78319512 78319512 G C RNF213 Missense_Mutation p.M2459I 0.13 benign(0.231) TCGA-CV-7254-01 17 78360548 78360548 C T RNF213 Missense_Mutation p.R4927W 0.49 probably_damaging(0.988) TCGA-CV-7254-01 17 79986313 79986313 A T LRRC45 Missense_Mutation p.Q389L 0.15 tolerated(0.12) benign(0.005) TCGA-CV-7254-01 17 80684370 80684370 G T FN3KRP Missense_Mutation p.Q161H 0.32 tolerated(0.16) benign(0.031) TCGA-CV-7254-01 17 80684371 80684371 G T FN3KRP Nonsense_Mutation p.E162* 0.32 TCGA-CV-7254-01 17 8383805 8383805 C T MYH10 Missense_Mutation p.R1768Q 0.45 probably_damaging(0.994) TCGA-CV-7254-01 18 39618758 39618758 A C PIK3C3 Missense_Mutation p.E661A 0.22 deleterious(0) probably_damaging(0.99) TCGA-CV-7254-01 18 5397303 5397303 G T EPB41L3 Missense_Mutation p.H865Q 0.41 tolerated(0.07) benign(0.004) TCGA-CV-7254-01 18 55027547 55027547 G C ST8SIA3 3'UTR 0.27 TCGA-CV-7254-01 18 9256148 9256148 G A ANKRD12 Silent p.K961K 0.17 TCGA-CV-7254-01 19 11138619 11138619 G T SMARCA4 Missense_Mutation p.R1125S 0.32 probably_damaging(0.944) TCGA-CV-7254-01 19 11486363 11486363 A T SWSAP1 Missense_Mutation p.T121S 0.58 tolerated(0.06) probably_damaging(0.998) TCGA-CV-7254-01 19 16977356 16977356 G T SIN3B Missense_Mutation p.V631F 0.59 deleterious(0.04) possibly_damaging(0.79) TCGA-CV-7254-01 19 19753398 19753398 C G GMIP Missense_Mutation p.R17T 0.59 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 19 22271543 22271543 C T ZNF257 Missense_Mutation p.L331F 0.35 deleterious(0.03) possibly_damaging(0.663) TCGA-CV-7254-01 19 40197266 40197266 T C LGALS14 Silent p.P44P 0.33 TCGA-CV-7254-01 19 40710471 40710471 G A MAP3K10 Missense_Mutation p.V315M 0.14 deleterious(0) probably_damaging(0.964) TCGA-CV-7254-01 19 44271786 44271786 G A KCNN4 Missense_Mutation p.T398M 0.51 tolerated(0.08) benign(0.191) TCGA-CV-7254-01 19 45406351 45406351 G A TOMM40 Silent p.L337L 0.22 TCGA-CV-7254-01 19 51728369 51728369 T A CD33 5'UTR 0.35 TCGA-CV-7254-01 19 54313633 54313633 G T NLRP12 Missense_Mutation p.T427K 0.38 deleterious(0.03) benign(0.018) TCGA-CV-7254-01 19 54744856 54744856 C G LILRA6 Missense_Mutation p.G269A 0.22 tolerated(0.35) possibly_damaging(0.868) TCGA-CV-7254-01 19 56114033 56114033 G A ZNF524 Silent p.L185L 0.44 TCGA-CV-7254-01 19 571494 571494 G A BSG 5'Flank 0.12 TCGA-CV-7254-01 19 57888603 57888603 C A ZNF547 Missense_Mutation p.Q87K 0.37 deleterious(0.03) benign(0.395) TCGA-CV-7254-01 19 6854109 6854109 G T VAV1 Silent p.R828R 0.20 TCGA-CV-7254-01 1 108247231 108247231 G A VAV3 Missense_Mutation p.A549V 0.42 tolerated(0.81) possibly_damaging(0.47) TCGA-CV-7254-01 1 109815846 109815858 AGAGAGTAGTGGC - CELSR2 Frame_Shift_Del p.E2800Tfs*21 0.19 TCGA-CV-7254-01 1 1120451 1120451 C A TTLL10 Silent p.R455R 0.46 TCGA-CV-7254-01 1 117504234 117504234 G T PTGFRN Missense_Mutation p.W528L 0.40 tolerated(0.2) probably_damaging(0.999) TCGA-CV-7254-01 1 150202958 150202958 T G ANP32E Missense_Mutation p.Y92S 0.08 deleterious(0) probably_damaging(0.992) TCGA-CV-7254-01 1 152277899 152277899 G - FLG Frame_Shift_Del p.Q3155Sfs*61 0.09 TCGA-CV-7254-01 1 152278871 152278871 G - FLG Frame_Shift_Del p.Q2831Sfs*61 0.11 TCGA-CV-7254-01 1 152278933 152278933 C A FLG Missense_Mutation p.G2810V 0.11 benign(0.429) TCGA-CV-7254-01 1 152595358 152595358 C T LCE3A Silent p.Q74Q 0.13 TCGA-CV-7254-01 1 156352463 156352463 C A RHBG Intron 0.23 TCGA-CV-7254-01 1 157557331 157557331 C A FCRL4 Missense_Mutation p.E194D 0.09 tolerated(0.11) benign(0.061) TCGA-CV-7254-01 1 157740241 157740241 G A FCRL2 Missense_Mutation p.L90F 0.18 tolerated(0.82) benign(0.003) TCGA-CV-7254-01 1 161789450 161789450 A G ATF6 Missense_Mutation p.M313V 0.07 deleterious(0.01) probably_damaging(0.95) TCGA-CV-7254-01 1 165624685 165624685 C A MGST3 Missense_Mutation p.Q135K 0.25 tolerated(0.3) benign(0.001) TCGA-CV-7254-01 1 165624686 165624686 A T MGST3 Missense_Mutation p.Q135L 0.25 deleterious(0.03) benign(0.006) TCGA-CV-7254-01 1 169390781 169390781 G C CCDC181 Silent p.L296L 0.27 TCGA-CV-7254-01 1 169512317 169512317 T C F5 Missense_Mutation p.R671G 0.25 deleterious(0.05) benign(0.081) TCGA-CV-7254-01 1 182025709 182025709 C - ZNF648 Frame_Shift_Del p.Q480Sfs*12 0.12 TCGA-CV-7254-01 1 190423907 190423907 C T BRINP3 Silent p.Q38Q 0.30 TCGA-CV-7254-01 1 197024991 197024991 A T F13B Missense_Mutation p.M403K 0.07 tolerated(0.96) benign(0.001) TCGA-CV-7254-01 1 197071613 197071613 T A ASPM Missense_Mutation p.R2256S 0.16 deleterious(0) probably_damaging(0.991) TCGA-CV-7254-01 1 200522870 200522870 G A KIF14 Silent p.L1531L 0.22 TCGA-CV-7254-01 1 201980112 201980112 G A ELF3 5'UTR 0.45 TCGA-CV-7254-01 1 206243246 206243247 - G C1orf186 Frame_Shift_Ins p.M6Hfs*37 0.10 TCGA-CV-7254-01 1 207755303 207755303 G T CR1 Missense_Mutation p.V1753F 0.24 deleterious(0.04) possibly_damaging(0.878) TCGA-CV-7254-01 1 211192294 211192294 C T KCNH1 Missense_Mutation p.R288H 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 1 214171271 214171271 C A PROX1 Missense_Mutation p.H465N 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-CV-7254-01 1 216258196 216258196 C A USH2A Missense_Mutation p.G1671C 0.25 probably_damaging(1) TCGA-CV-7254-01 1 223116610 223116610 C T DISP1 Silent p.L149L 0.20 TCGA-CV-7254-01 1 231333150 231333150 G C TRIM67 Missense_Mutation p.D360H 0.30 deleterious(0) possibly_damaging(0.804) TCGA-CV-7254-01 1 240371752 240371752 G T FMN2 Missense_Mutation p.G1214C 0.19 unknown(0) TCGA-CV-7254-01 1 245848773 245848773 C T KIF26B Silent p.L830L 0.19 TCGA-CV-7254-01 1 248789867 248789867 T A OR2T11 Missense_Mutation p.D188V 0.52 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 1 36509068 36509068 C - AGO3 Frame_Shift_Del p.P732Qfs*52 0.25 TCGA-CV-7254-01 1 74670983 74670983 G T FPGT Missense_Mutation p.V418F 0.45 deleterious(0) probably_damaging(0.966) TCGA-CV-7254-01 1 78390878 78390878 G A NEXN Silent p.E151E 0.29 TCGA-CV-7254-01 20 2413288 2413288 G T TGM6 Nonstop_Mutation p.*707Lext*6 0.22 TCGA-CV-7254-01 20 30070276 30070276 G A REM1 Missense_Mutation p.E204K 0.19 deleterious(0) possibly_damaging(0.811) TCGA-CV-7254-01 20 3678550 3678550 G A SIGLEC1 Missense_Mutation p.R673C 0.16 deleterious(0) probably_damaging(0.956) TCGA-CV-7254-01 20 7875861 7875861 G T HAO1 Silent p.A244A 0.14 TCGA-CV-7254-01 21 11098776 11098776 C A BAGE2 RNA 0.11 TCGA-CV-7254-01 21 45050217 45050217 G A HSF2BP Missense_Mutation p.A187V 0.09 tolerated(0.07) probably_damaging(0.971) TCGA-CV-7254-01 22 18210216 18210216 G C BCL2L13 Missense_Mutation p.K458N 0.05 deleterious_low_confidence(0) benign(0.403) TCGA-CV-7254-01 22 30782669 30782669 G A RNF215 Missense_Mutation p.A122V 0.19 tolerated(0.15) benign(0.006) TCGA-CV-7254-01 22 40760320 40760320 C T ADSL Missense_Mutation p.A381V 0.12 deleterious(0.01) possibly_damaging(0.738) TCGA-CV-7254-01 22 45571834 45571834 A G NUP50 Silent p.G71G 0.06 TCGA-CV-7254-01 2 100210206 100210206 C T AFF3 Silent p.K664K 0.15 TCGA-CV-7254-01 2 102968311 102968311 A C IL1RL1 Missense_Mutation p.Q534P 0.13 deleterious(0.04) probably_damaging(0.942) TCGA-CV-7254-01 2 10912735 10912738 AAGT - ATP6V1C2 Splice_Site p.X213_splice 0.17 TCGA-CV-7254-01 2 116535404 116535404 T A DPP10 Missense_Mutation p.L456Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-CV-7254-01 2 11696796 11696796 A G GREB1 Missense_Mutation p.H19R 0.30 deleterious(0) probably_damaging(0.995) TCGA-CV-7254-01 2 11696840 11696840 A T GREB1 Missense_Mutation p.R34W 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 2 120844792 120844792 G A EPB41L5 Silent p.L283L 0.22 TCGA-CV-7254-01 2 121747427 121747427 C G GLI2 Missense_Mutation p.P1313A 0.08 tolerated_low_confidence(0.28) benign(0.079) TCGA-CV-7254-01 2 128775403 128775403 G C SAP130 Missense_Mutation p.Q93E 0.14 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CV-7254-01 2 135745488 135745488 T A MAP3K19 Missense_Mutation p.K318N 0.29 tolerated(0.35) benign(0.01) TCGA-CV-7254-01 2 144525796 144525796 T C ARHGAP15 3'UTR 0.29 TCGA-CV-7254-01 2 144903281 144903281 T A GTDC1 Missense_Mutation p.N69Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 2 176860325 176860325 G C KIAA1715 5'UTR 0.26 TCGA-CV-7254-01 2 179577214 179577214 C T TTN Nonsense_Mutation p.W9145* 0.20 TCGA-CV-7254-01 2 179598434 179598434 G A TTN Missense_Mutation p.P5228S 0.20 TCGA-CV-7254-01 2 197711732 197711732 C G PGAP1 Missense_Mutation p.L715F 0.31 tolerated(0.07) benign(0.033) TCGA-CV-7254-01 2 197866545 197866545 C T ANKRD44 Silent p.E764E 0.22 TCGA-CV-7254-01 2 198570156 198570156 G T MARS2 Silent p.L9L 0.12 TCGA-CV-7254-01 2 205989155 205989155 G A PARD3B Missense_Mutation p.D424N 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 2 21230159 21230159 C A APOB Missense_Mutation p.C3194F 0.32 benign(0) TCGA-CV-7254-01 2 21231819 21231819 T - APOB Frame_Shift_Del p.I2641Sfs*26 0.12 TCGA-CV-7254-01 2 216190845 216190845 G T ATIC Missense_Mutation p.R172L 0.22 deleterious(0.03) benign(0.022) TCGA-CV-7254-01 2 219543985 219543985 G T STK36 Splice_Site p.X260_splice 0.15 TCGA-CV-7254-01 2 25048966 25048966 A T ADCY3 Missense_Mutation p.M842K 0.19 tolerated(0.06) benign(0.084) TCGA-CV-7254-01 2 27800686 27800686 C T C2orf16 Missense_Mutation p.S416F 0.09 deleterious(0.02) probably_damaging(0.988) TCGA-CV-7254-01 2 44513108 44513108 T C SLC3A1 Intron 0.16 TCGA-CV-7254-01 2 55252626 55252626 T A RTN4 Missense_Mutation p.E870V 0.14 deleterious(0) possibly_damaging(0.756) TCGA-CV-7254-01 2 61415830 61415830 T A USP34 Missense_Mutation p.T3350S 0.25 tolerated(0.21) benign(0.013) TCGA-CV-7254-01 2 74128460 74128460 G A ACTG2 Missense_Mutation p.A8T 0.18 tolerated_low_confidence(0.06) benign(0.384) TCGA-CV-7254-01 2 79254286 79254286 G T REG3G Missense_Mutation p.D108Y 0.21 deleterious(0.03) probably_damaging(1) TCGA-CV-7254-01 2 79349170 79349170 G T REG1A Missense_Mutation p.E80D 0.21 deleterious(0) possibly_damaging(0.837) TCGA-CV-7254-01 2 79349171 79349171 G T REG1A Missense_Mutation p.G81C 0.22 deleterious(0) probably_damaging(0.997) TCGA-CV-7254-01 2 85570770 85570803 TAGAGGTTGGGGATGGGGCTCTGGGCCCTCAAGG GGTTGGTGATGGGGCTCTGGGCCTTCA RETSAT Frame_Shift_Del p.S551Lfs*11 0.08 TCGA-CV-7254-01 2 98797619 98797619 G T VWA3B Missense_Mutation p.D419Y 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 2 98916586 98916586 T C VWA3B Silent p.F1109F 0.25 TCGA-CV-7254-01 3 108147552 108147552 G A MYH15 Silent p.F1183F 0.17 TCGA-CV-7254-01 3 112999437 112999437 C A BOC Silent p.I745I 0.17 TCGA-CV-7254-01 3 118870107 118870107 G A C3orf30 Missense_Mutation p.D527N 0.34 deleterious(0) probably_damaging(0.981) TCGA-CV-7254-01 3 126747090 126747090 G T PLXNA1 Missense_Mutation p.D1526Y 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 3 129140646 129140646 C T EFCAB12 Missense_Mutation p.G17E 0.36 tolerated(0.09) benign(0.051) TCGA-CV-7254-01 3 13438951 13438951 G T NUP210 Missense_Mutation p.D114E 0.26 deleterious(0.05) possibly_damaging(0.757) TCGA-CV-7254-01 3 137843691 137843691 G T A4GNT Silent p.L146L 0.08 TCGA-CV-7254-01 3 154138924 154138924 T A GPR149 Missense_Mutation p.E509D 0.51 tolerated(0.13) benign(0.015) TCGA-CV-7254-01 3 17052474 17052474 A T PLCL2 Missense_Mutation p.T420S 0.24 tolerated(0.53) benign(0.02) TCGA-CV-7254-01 3 27203967 27203967 T A NEK10 Missense_Mutation p.N999Y 0.34 tolerated(0.27) benign(0.335) TCGA-CV-7254-01 3 27760106 27760106 C T EOMES Missense_Mutation p.A451T 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 3 36898414 36898414 C A TRANK1 Silent p.R889R 0.61 TCGA-CV-7254-01 3 38347844 38347844 C G SLC22A14 Missense_Mutation p.H109Q 0.39 deleterious(0) benign(0.04) TCGA-CV-7254-01 3 40231705 40231705 G A MYRIP Silent p.L472L 0.47 TCGA-CV-7254-01 3 43743731 43743731 A C ABHD5 Missense_Mutation p.E53A 0.45 tolerated(0.5) benign(0.004) TCGA-CV-7254-01 3 44762721 44762721 G T ZNF502 Missense_Mutation p.D138Y 0.16 tolerated(0.09) benign(0.037) TCGA-CV-7254-01 3 50225414 50225414 A T SEMA3F Missense_Mutation p.I742F 0.33 deleterious(0.01) possibly_damaging(0.852) TCGA-CV-7254-01 3 51995025 51995025 C A PCBP4 Splice_Site p.X35_splice 0.11 TCGA-CV-7254-01 4 111539443 111539443 G C PITX2 Nonsense_Mutation p.Y271* 0.12 TCGA-CV-7254-01 4 120446754 120446754 G A PDE5A Missense_Mutation p.R577W 0.36 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 4 156136121 156136121 C G NPY2R Missense_Mutation p.Q344E 0.16 tolerated(0.47) benign(0.002) TCGA-CV-7254-01 4 187522436 187522436 T C FAT1 Missense_Mutation p.Y3876C 0.10 probably_damaging(0.989) TCGA-CV-7254-01 4 189068327 189068327 C A TRIML1 Missense_Mutation p.P403H 0.23 deleterious(0) probably_damaging(0.909) TCGA-CV-7254-01 4 55964304 55964304 C A KDR Missense_Mutation p.G837C 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 4 55970955 55970955 G T KDR Silent p.A614A 0.14 TCGA-CV-7254-01 4 68527899 68527900 AT - UBA6 Intron 0.08 TCGA-CV-7254-01 4 71275379 71275379 T C PROL1 Missense_Mutation p.Y112H 0.26 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-CV-7254-01 4 79207678 79207678 C A FRAS1 Missense_Mutation p.R507S 0.15 benign(0.019) TCGA-CV-7254-01 4 82061705 82061705 C G PRKG2 Missense_Mutation p.C509S 0.12 tolerated(0.33) benign(0.022) TCGA-CV-7254-01 4 89407343 89407343 A G HERC5 Silent p.V605V 0.28 TCGA-CV-7254-01 5 11397213 11397213 C G CTNND2 Missense_Mutation p.G181A 0.27 tolerated(0.82) benign(0.005) TCGA-CV-7254-01 5 13714614 13714614 T A DNAH5 Missense_Mutation p.K4342M 0.15 probably_damaging(0.934) TCGA-CV-7254-01 5 140559200 140559200 G C PCDHB8 Missense_Mutation p.E529Q 0.17 tolerated_low_confidence(0.14) benign(0.018) TCGA-CV-7254-01 5 140563937 140563937 G C PCDHB16 Missense_Mutation p.W601C 0.56 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-7254-01 5 140594219 140594219 C G PCDHB13 Missense_Mutation p.P175R 0.34 deleterious_low_confidence(0.02) benign(0.094) TCGA-CV-7254-01 5 180219088 180219088 G T MGAT1 Missense_Mutation p.P295Q 0.60 probably_damaging(0.99) TCGA-CV-7254-01 5 23524491 23524491 C G PRDM9 Missense_Mutation p.F333L 0.18 tolerated(0.17) benign(0.092) TCGA-CV-7254-01 5 2749089 2749089 C T IRX2 Missense_Mutation p.A245T 0.16 tolerated(0.5) benign(0.001) TCGA-CV-7254-01 5 422969 422969 G A AHRR Silent p.E193E 0.20 TCGA-CV-7254-01 5 43295957 43295957 A T HMGCS1 Missense_Mutation p.C268S 0.15 deleterious(0.05) possibly_damaging(0.901) TCGA-CV-7254-01 5 70952610 70952610 C T MCCC2 Silent p.L539L 0.33 TCGA-CV-7254-01 5 75989261 75989261 G T IQGAP2 Silent p.A1329A 0.30 TCGA-CV-7254-01 5 82836553 82836553 C G VCAN Missense_Mutation p.I2577M 0.36 deleterious(0) probably_damaging(0.98) TCGA-CV-7254-01 6 112512959 112512959 A - LAMA4 Frame_Shift_Del p.F199Lfs*36 0.23 TCGA-CV-7254-01 6 117240431 117240431 G A RFX6 Missense_Mutation p.R385Q 0.17 deleterious(0) probably_damaging(0.991) TCGA-CV-7254-01 6 130761863 130761863 C T TMEM200A Missense_Mutation p.T99I 0.38 tolerated(0.2) benign(0.246) TCGA-CV-7254-01 6 165715309 165715309 G T C6orf118 Missense_Mutation p.P168T 0.44 tolerated(0.61) benign(0.027) TCGA-CV-7254-01 6 165832125 165832125 T C PDE10A Missense_Mutation p.I332M 0.38 deleterious(0) probably_damaging(0.98) TCGA-CV-7254-01 6 168344628 168344628 G A MLLT4 Missense_Mutation p.E1076K 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-CV-7254-01 6 24423169 24423169 A G MRS2 Missense_Mutation p.H371R 0.40 tolerated(0.84) benign(0.007) TCGA-CV-7254-01 6 31692374 31692374 C A C6orf25 Missense_Mutation p.P171T 0.14 tolerated_low_confidence(0.05) benign(0.099) TCGA-CV-7254-01 6 31864040 31864040 C T EHMT2 Silent p.Q194Q 0.41 TCGA-CV-7254-01 6 46660541 46660541 C A TDRD6 Missense_Mutation p.A1559E 0.13 tolerated(1) benign(0.003) TCGA-CV-7254-01 7 103126741 103126742 - A RELN Frame_Shift_Ins p.G3296Wfs*15 0.30 TCGA-CV-7254-01 7 112555359 112555359 A G C7orf60 Splice_Site p.X101_splice 0.40 TCGA-CV-7254-01 7 117874864 117874864 G A ANKRD7 Missense_Mutation p.G135D 0.33 tolerated(0.1) probably_damaging(0.992) TCGA-CV-7254-01 7 132192549 132192549 G C PLXNA4 Missense_Mutation p.R302G 0.20 tolerated(0.19) benign(0.299) TCGA-CV-7254-01 7 141794549 141794549 G T MGAM Silent p.T1552T 0.15 TCGA-CV-7254-01 7 150647315 150647315 T A KCNH2 Missense_Mutation p.Y780F 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-CV-7254-01 7 45141455 45141455 G A TBRG4 Silent p.L512L 0.19 TCGA-CV-7254-01 7 71571178 71571178 C T CALN1 Missense_Mutation p.E116K 0.08 deleterious(0.02) benign(0.32) TCGA-CV-7254-01 7 7622858 7622858 G A MIOS Silent p.K501K 0.06 TCGA-CV-7254-01 7 82580057 82580057 G C PCLO Missense_Mutation p.Q3283E 0.10 unknown(0) TCGA-CV-7254-01 7 92733867 92733867 C A SAMD9 Missense_Mutation p.R515I 0.09 deleterious(0) possibly_damaging(0.572) TCGA-CV-7254-01 7 92762801 92762801 T C SAMD9L Silent p.R828R 0.61 TCGA-CV-7254-01 7 96651486 96651486 G C DLX5 Intron 0.61 TCGA-CV-7254-01 7 98449123 98449123 C T TMEM130 Silent p.G309G 0.58 TCGA-CV-7254-01 8 113301698 113301698 G T CSMD3 Missense_Mutation p.S3015Y 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7254-01 8 131070203 131070203 C A ASAP1 Missense_Mutation p.W1104C 0.42 deleterious(0) probably_damaging(0.94) TCGA-CV-7254-01 8 13948034 13948034 C G SGCZ Missense_Mutation p.C286S 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-CV-7254-01 8 139728521 139728521 G T COL22A1 Silent p.G804G 0.20 TCGA-CV-7254-01 8 23702425 23702425 T G STC1 Missense_Mutation p.H201P 0.21 tolerated(0.29) benign(0.354) TCGA-CV-7254-01 8 39682379 39682379 T C ADAM2 Missense_Mutation p.S76G 0.19 deleterious(0.01) benign(0.102) TCGA-CV-7254-01 8 42563960 42563960 T C CHRNB3 Silent p.N51N 0.36 TCGA-CV-7254-01 8 62438587 62438587 C T ASPH Missense_Mutation p.E617K 0.29 deleterious(0) probably_damaging(0.992) TCGA-CV-7254-01 8 67525166 67525166 C A MYBL1 5'UTR 0.26 TCGA-CV-7254-01 8 86126909 86126909 C A C8orf59 Intron 0.31 TCGA-CV-7254-01 8 87242004 87242004 A G SLC7A13 Missense_Mutation p.V168A 0.18 deleterious(0) benign(0.403) TCGA-CV-7254-01 9 112189263 112189263 T G PTPN3 Missense_Mutation p.Q323P 0.46 tolerated(0.06) benign(0.397) TCGA-CV-7254-01 9 125154726 125154726 G T PTGS1 Missense_Mutation p.C568F 0.37 deleterious(0) probably_damaging(1) TCGA-CV-7254-01 9 130988359 130988359 A G DNM1 Intron 0.21 TCGA-CV-7254-01 9 131482522 131482522 A G PKN3 Missense_Mutation p.E806G 0.52 deleterious(0.02) benign(0.243) TCGA-CV-7254-01 9 133738362 133738362 G A ABL1 Silent p.G273G 0.18 TCGA-CV-7254-01 9 134183584 134183584 C G PPAPDC3 Silent p.S242S 0.38 TCGA-CV-7254-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.69 TCGA-CV-7254-01 9 34490414 34490414 C A DNAI1 Silent p.P183P 0.65 TCGA-CV-7254-01 9 35616525 35616525 G A CD72 Intron 0.36 TCGA-CV-7254-01 9 70177586 70177586 C T FOXD4L5 Missense_Mutation p.G133D 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7254-01 9 71845073 71845073 G C TJP2 Silent p.G563G 0.38 TCGA-CV-7254-01 9 71866155 71866155 G T TJP2 Nonsense_Mutation p.E1097* 0.30 TCGA-CV-7254-01 9 77436731 77436731 G T TRPM6 Silent p.V288V 0.39 TCGA-CV-7254-01 X 106312633 106312633 C G RBM41 Splice_Site p.X310_splice 0.35 TCGA-CV-7254-01 X 110576307 110576307 A T DCX Silent p.A341A 0.62 TCGA-CV-7254-01 X 119509289 119509289 C A ATP1B4 Missense_Mutation p.Q209K 0.75 deleterious(0) probably_damaging(0.999) TCGA-CV-7254-01 X 128940205 128940205 G A ZDHHC9 3'UTR 0.36 TCGA-CV-7254-01 X 129154964 129154964 G T BCORL1 Missense_Mutation p.R1149L 0.70 possibly_damaging(0.872) TCGA-CV-7254-01 X 130408088 130408088 C A IGSF1 Nonsense_Mutation p.E1287* 0.58 TCGA-CV-7254-01 X 139038574 139038574 T C CXorf66 Silent p.E189E 0.16 TCGA-CV-7254-01 X 37651299 37651299 T C CYBB Silent p.I108I 0.25 TCGA-CV-7254-01 X 83411200 83411200 C A RPS6KA6 Splice_Site p.X48_splice 0.42 TCGA-CV-7254-01 X 89177580 89177580 C A TGIF2LX Missense_Mutation p.Q166K 0.31 tolerated(0.1) benign(0.091) TCGA-CV-7255-01 10 102706839 102706839 C T FAM178A Missense_Mutation p.P993L 0.24 tolerated(0.18) probably_damaging(0.982) TCGA-CV-7255-01 10 102777943 102777943 T C PDZD7 Missense_Mutation p.R479G 0.25 deleterious_low_confidence(0.01) benign(0.047) TCGA-CV-7255-01 10 18629725 18629725 A G CACNB2 Intron 0.32 TCGA-CV-7255-01 10 71677072 71677072 G T COL13A1 Missense_Mutation p.G327C 0.34 deleterious(0) probably_damaging(1) TCGA-CV-7255-01 11 105758286 105758286 C A GRIA4 Silent p.I238I 0.08 TCGA-CV-7255-01 11 124413461 124413461 A T OR8B12 Missense_Mutation p.F30L 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7255-01 11 1264977 1264977 C T MUC5B Silent p.S2289S 0.18 TCGA-CV-7255-01 11 60183510 60183510 C T MS4A14 Missense_Mutation p.P390S 0.33 tolerated(0.73) benign(0.006) TCGA-CV-7255-01 11 65623524 65623524 C T CFL1 Missense_Mutation p.D65N 0.41 tolerated(0.11) benign(0.028) TCGA-CV-7255-01 11 6588483 6588483 C - DNHD1 Frame_Shift_Del p.R3916Afs*8 0.17 TCGA-CV-7255-01 11 66454940 66454940 C T SPTBN2 Missense_Mutation p.R2227H 0.36 deleterious(0) probably_damaging(0.998) TCGA-CV-7255-01 11 88911070 88911070 C G TYR 5'UTR 0.37 TCGA-CV-7255-01 12 133331319 133331319 C T ANKLE2 Silent p.K194K 0.22 TCGA-CV-7255-01 12 55945874 55945874 T C OR6C4 Silent p.Y288Y 0.27 TCGA-CV-7255-01 12 81472045 81472045 G A ACSS3 Missense_Mutation p.R49Q 0.46 tolerated_low_confidence(0.11) benign(0.117) TCGA-CV-7255-01 13 39265893 39265893 G T FREM2 Missense_Mutation p.C1471F 0.23 tolerated(0.18) benign(0.003) TCGA-CV-7255-01 13 45149170 45149170 A G TSC22D1 Silent p.A347A 0.24 TCGA-CV-7255-01 14 20249046 20249046 T - OR4M1 Frame_Shift_Del p.C189Vfs*9 0.08 TCGA-CV-7255-01 14 21897487 21897487 G A CHD8 Missense_Mutation p.S284L 0.23 deleterious_low_confidence(0.01) benign(0.17) TCGA-CV-7255-01 14 57268457 57268457 A - OTX2 Frame_Shift_Del p.L297Cfs*5 0.14 TCGA-CV-7255-01 14 69697274 69697274 C T EXD2 Missense_Mutation p.R226C 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7255-01 14 74426168 74426168 A C COQ6 Silent p.A278A 0.13 TCGA-CV-7255-01 14 95029811 95029811 G - SERPINA4 5'UTR 0.11 TCGA-CV-7255-01 15 24922410 24922410 C T NPAP1 Missense_Mutation p.P466S 0.21 tolerated(0.06) benign(0.445) TCGA-CV-7255-01 15 43446919 43446919 G C TMEM62 Missense_Mutation p.D358H 0.10 deleterious(0) probably_damaging(0.979) TCGA-CV-7255-01 15 52401938 52401938 A T BCL2L10 3'UTR 0.17 TCGA-CV-7255-01 16 20442600 20442600 G A ACSM5 Missense_Mutation p.R422H 0.13 deleterious(0) possibly_damaging(0.881) TCGA-CV-7255-01 16 23221114 23221114 A G SCNN1G Missense_Mutation p.E374G 0.10 tolerated(0.34) possibly_damaging(0.876) TCGA-CV-7255-01 16 29096582 29096582 G A RRN3P2 RNA 0.18 TCGA-CV-7255-01 16 29828566 29828566 A G PAGR1 Missense_Mutation p.E173G 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-7255-01 16 58077474 58077475 - G MMP15 Frame_Shift_Ins p.S505Rfs*11 0.23 TCGA-CV-7255-01 16 89702704 89702704 G A DPEP1 Silent p.Q90Q 0.23 TCGA-CV-7255-01 17 1675260 1675260 A T SERPINF1 Missense_Mutation p.Q178H 0.17 deleterious(0.04) benign(0.021) TCGA-CV-7255-01 17 19835125 19835125 G A AKAP10 Missense_Mutation p.A545V 0.16 tolerated(0.45) benign(0.035) TCGA-CV-7255-01 17 26694894 26694894 C T CTB-96E2.2 Missense_Mutation p.R47H 0.28 tolerated(0.11) benign(0.06) TCGA-CV-7255-01 17 36927448 36927450 CTC - PIP4K2B In_Frame_Del p.E295del 0.24 TCGA-CV-7255-01 17 37265528 37265528 T C PLXDC1 Missense_Mutation p.I124M 0.29 deleterious(0) possibly_damaging(0.65) TCGA-CV-7255-01 17 40914816 40914816 C T RAMP2 Silent p.P158P 0.24 TCGA-CV-7255-01 17 70119789 70119789 G A SOX9 Missense_Mutation p.R264K 0.21 tolerated(0.23) benign(0.046) TCGA-CV-7255-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.81 TCGA-CV-7255-01 17 8167249 8167249 C T PFAS Missense_Mutation p.R596W 0.09 deleterious(0) possibly_damaging(0.773) TCGA-CV-7255-01 18 13885467 13885467 A G MC2R Silent p.N17N 0.18 TCGA-CV-7255-01 18 61602211 61602211 G A SERPINB10 Missense_Mutation p.G310E 0.20 deleterious(0) probably_damaging(1) TCGA-CV-7255-01 18 9886722 9886722 C T TXNDC2 Silent p.A82A 0.22 TCGA-CV-7255-01 19 10675689 10675689 G A KRI1 Missense_Mutation p.R70W 0.56 deleterious(0) possibly_damaging(0.776) TCGA-CV-7255-01 19 17892312 17892312 T A FCHO1 Missense_Mutation p.L598M 0.21 tolerated(0.22) benign(0.26) TCGA-CV-7255-01 19 40392569 40392569 G A FCGBP Silent p.S2645S 0.23 TCGA-CV-7255-01 19 57967606 57967606 C T VN1R1 Silent p.T83T 0.27 TCGA-CV-7255-01 19 8122704 8122704 G C CCL25 Missense_Mutation p.K115N 0.33 tolerated(0.22) benign(0.199) TCGA-CV-7255-01 1 111969225 111969225 C A OVGP1 Missense_Mutation p.A32S 0.27 tolerated(0.38) probably_damaging(0.975) TCGA-CV-7255-01 1 117663359 117663359 G A TRIM45 Silent p.C155C 0.22 TCGA-CV-7255-01 1 1262354 1262354 G A GLTPD1 Missense_Mutation p.D22N 0.18 tolerated(0.79) benign(0) TCGA-CV-7255-01 1 152277569 152277569 C T FLG Missense_Mutation p.G3265R 0.39 unknown(0) TCGA-CV-7255-01 1 156314481 156314481 A T TSACC Missense_Mutation p.T49S 0.13 tolerated_low_confidence(0.3) benign(0.007) TCGA-CV-7255-01 1 175116091 175116091 G A TNN Missense_Mutation p.G1262R 0.14 deleterious(0) probably_damaging(1) TCGA-CV-7255-01 1 225155485 225155485 G T DNAH14 Intron 0.25 TCGA-CV-7255-01 1 232626732 232626732 G A SIPA1L2 Missense_Mutation p.P565L 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-7255-01 1 232626733 232626733 G T SIPA1L2 Missense_Mutation p.P565T 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-7255-01 1 31837035 31837035 G C ZCCHC17 Missense_Mutation p.E241Q 0.33 deleterious_low_confidence(0.05) unknown(0) TCGA-CV-7255-01 1 34082539 34082539 G C CSMD2 Missense_Mutation p.R1955G 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-7255-01 1 39792914 39792914 A C MACF1 Missense_Mutation p.Q1506H 0.29 benign(0.018) TCGA-CV-7255-01 1 43395563 43395564 - TCGT SLC2A1 Frame_Shift_Ins p.E221Rfs*17 0.16 TCGA-CV-7255-01 1 43636551 43636551 C T EBNA1BP2 Splice_Site p.X163_splice 0.34 TCGA-CV-7255-01 1 47726187 47726202 TATTTAATAGGTGGTT - STIL Frame_Shift_Del p.N947Vfs*14 0.25 TCGA-CV-7255-01 1 94342296 94342296 C T DNTTIP2 Missense_Mutation p.D399N 0.18 tolerated(0.13) benign(0.012) TCGA-CV-7255-01 20 32307907 32307911 CCGTT - PXMP4 Frame_Shift_Del p.N35Gfs*85 0.20 TCGA-CV-7255-01 20 33033215 33033215 T C ITCH Silent p.R404R 0.32 TCGA-CV-7255-01 20 40790072 40790072 C T PTPRT Missense_Mutation p.A868T 0.18 deleterious(0) probably_damaging(0.95) TCGA-CV-7255-01 20 44676660 44676660 C T SLC12A5 Missense_Mutation p.L673F 0.12 deleterious(0.02) probably_damaging(0.98) TCGA-CV-7255-01 20 56098320 56098320 C T CTCFL Silent p.Q186Q 0.12 TCGA-CV-7255-01 20 61143882 61143882 G A C20orf166 5'Flank 0.17 TCGA-CV-7255-01 21 16337046 16337049 TTCT - NRIP1 Frame_Shift_Del p.K1155Nfs*15 0.34 TCGA-CV-7255-01 22 38477107 38477107 G T SLC16A8 Missense_Mutation p.A313E 0.33 deleterious(0.05) benign(0.176) TCGA-CV-7255-01 22 45289390 45289390 G A PHF21B Missense_Mutation p.R303W 0.33 deleterious(0) probably_damaging(0.998) TCGA-CV-7255-01 2 11767141 11767141 C T GREB1 Missense_Mutation p.R1454W 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-CV-7255-01 2 168104558 168104558 C - XIRP2 Frame_Shift_Del p.T2219Nfs*4 0.11 TCGA-CV-7255-01 2 170055331 170055331 C T LRP2 Missense_Mutation p.C2848Y 0.28 probably_damaging(0.987) TCGA-CV-7255-01 2 171055899 171055899 A T MYO3B Missense_Mutation p.S62C 0.17 tolerated(0.18) possibly_damaging(0.895) TCGA-CV-7255-01 2 179569648 179569648 C G TTN Missense_Mutation p.E9884Q 0.26 TCGA-CV-7255-01 2 179595244 179595244 G T TTN Missense_Mutation p.L6006M 0.27 TCGA-CV-7255-01 2 187506226 187506226 A T ITGAV Missense_Mutation p.Q357L 0.26 tolerated(0.05) benign(0.005) TCGA-CV-7255-01 2 220136312 220136312 C A TUBA4B RNA 0.24 TCGA-CV-7255-01 2 24009046 24009046 G A ATAD2B Missense_Mutation p.R942C 0.25 deleterious(0.03) probably_damaging(0.939) TCGA-CV-7255-01 2 241500794 241500794 G T DUSP28 Missense_Mutation p.W147C 0.23 deleterious(0.01) possibly_damaging(0.588) TCGA-CV-7255-01 2 27884294 27884294 T A SUPT7L Intron 0.24 TCGA-CV-7255-01 2 71044191 71044202 TAAATGTCTGGA - CLEC4F In_Frame_Del p.I104_F107del 0.21 TCGA-CV-7255-01 3 109027049 109027049 T C DPPA2 Missense_Mutation p.Y163C 0.21 tolerated(0.19) benign(0.273) TCGA-CV-7255-01 3 145917744 145917744 T A PLSCR4 Silent p.T160T 0.11 TCGA-CV-7255-01 3 145917745 145917745 G A PLSCR4 Missense_Mutation p.T160I 0.11 deleterious(0.02) benign(0.133) TCGA-CV-7255-01 3 167223119 167223119 C T WDR49 Missense_Mutation p.G602S 0.13 tolerated(0.17) benign(0.017) TCGA-CV-7255-01 3 9908729 9908729 T A CIDEC 3'UTR 0.68 TCGA-CV-7255-01 4 1360207 1360207 C T UVSSA Missense_Mutation p.R426W 0.27 tolerated(0.06) benign(0.117) TCGA-CV-7255-01 4 146824264 146824264 C T ZNF827 Silent p.Q49Q 0.27 TCGA-CV-7255-01 4 3131671 3131671 C A HTT Missense_Mutation p.N588K 0.07 benign(0.002) TCGA-CV-7255-01 4 3131672 3131672 C G HTT Missense_Mutation p.Q589E 0.07 benign(0.066) TCGA-CV-7255-01 5 101834432 101834432 C T SLCO6A1 Silent p.P39P 0.65 TCGA-CV-7255-01 5 135231263 135231263 T G IL9 Missense_Mutation p.K44T 0.18 tolerated(0.33) probably_damaging(0.913) TCGA-CV-7255-01 5 137727094 137727097 GAAA - KDM3B Frame_Shift_Del p.K592Cfs*18 0.22 TCGA-CV-7255-01 5 153026582 153026582 C T GRIA1 Silent p.H115H 0.45 TCGA-CV-7255-01 5 158749490 158749490 C T IL12B Missense_Mutation p.E132K 0.25 deleterious(0.02) possibly_damaging(0.46) TCGA-CV-7255-01 5 16701457 16701457 G C MYO10 Nonsense_Mutation p.S1016* 0.29 TCGA-CV-7255-01 5 172662104 172662104 C T NKX2-5 5'UTR 0.35 TCGA-CV-7255-01 5 176301345 176301345 G T UNC5A Missense_Mutation p.D386Y 0.19 deleterious(0) possibly_damaging(0.905) TCGA-CV-7255-01 6 112537594 112537594 C A LAMA4 Missense_Mutation p.C91F 0.12 deleterious(0) probably_damaging(1) TCGA-CV-7255-01 6 117250042 117250042 C T RFX6 Missense_Mutation p.P840L 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7255-01 6 26033684 26033684 C A HIST1H2AB Missense_Mutation p.G38V 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7255-01 6 26033685 26033685 C A HIST1H2AB Missense_Mutation p.G38C 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7255-01 6 27107126 27107126 A C HIST1H4I Missense_Mutation p.K13N 0.26 deleterious_low_confidence(0.04) benign(0.067) TCGA-CV-7255-01 6 29523628 29523628 C A UBD 3'UTR 0.23 TCGA-CV-7255-01 6 31323330 31323330 T G HLA-B Missense_Mutation p.D220A 0.16 deleterious_low_confidence(0.02) benign(0.098) TCGA-CV-7255-01 6 32138309 32138309 C T AGPAT1 Missense_Mutation p.A135T 0.12 deleterious(0.01) benign(0.365) TCGA-CV-7255-01 6 32150719 32150719 G T AGER Missense_Mutation p.A197D 0.12 deleterious(0.04) possibly_damaging(0.48) TCGA-CV-7255-01 6 32150720 32150720 C T AGER Missense_Mutation p.A197T 0.12 tolerated(0.06) benign(0.037) TCGA-CV-7255-01 6 32150723 32150723 G C AGER Missense_Mutation p.P196A 0.11 tolerated(0.3) benign(0.446) TCGA-CV-7255-01 7 100238307 100238307 A G TFR2 Splice_Site p.X158_splice 0.22 TCGA-CV-7255-01 7 1132135 1132135 G A GPER1 Silent p.A257A 0.31 TCGA-CV-7255-01 7 128640537 128640537 C T TNPO3 Silent p.G319G 0.15 TCGA-CV-7255-01 7 30058665 30058665 C A FKBP14 Nonsense_Mutation p.E142* 0.17 TCGA-CV-7255-01 7 74211327 74211327 G TT GTF2IRD2 Frame_Shift_Ins p.L842Nfs*56 0.12 TCGA-CV-7255-01 7 94827740 94827740 C T PPP1R9A Missense_Mutation p.R612C 0.15 tolerated(0.1) probably_damaging(0.999) TCGA-CV-7255-01 8 100871564 100871572 AGCCCTGCA - VPS13B In_Frame_Del p.P3660_S3662del 0.12 TCGA-CV-7255-01 8 113249437 113249437 T C CSMD3 Missense_Mutation p.M3537V 0.11 tolerated(1) benign(0.013) TCGA-CV-7255-01 8 113347673 113347673 G A CSMD3 Silent p.I2350I 0.73 TCGA-CV-7255-01 8 56860268 56860268 G A LYN Missense_Mutation p.M90I 0.16 deleterious(0.01) benign(0.094) TCGA-CV-7255-01 8 80915385 80915385 A G MRPS28 Missense_Mutation p.S82P 0.15 deleterious(0) probably_damaging(0.997) TCGA-CV-7255-01 8 92352728 92352728 T C SLC26A7 Silent p.A325A 0.16 TCGA-CV-7255-01 9 126125359 126125359 C T CRB2 Missense_Mutation p.R104C 0.17 deleterious(0.01) unknown(0) TCGA-CV-7255-01 9 130712724 130712724 C T FAM102A Missense_Mutation p.R131H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-7255-01 9 21968234 21968234 G - CDKN2A 3'UTR 0.42 TCGA-CV-7255-01 9 34661860 34661860 T A IL11RA 3'UTR 0.07 TCGA-CV-7255-01 9 78796390 78796390 G A PCSK5 Missense_Mutation p.E694K 0.23 tolerated(0.07) probably_damaging(0.926) TCGA-CV-7255-01 X 102931661 102931661 G A MORF4L2 Missense_Mutation p.R99W 0.20 deleterious(0.05) benign(0.047) TCGA-CV-7255-01 X 125686191 125686191 G C DCAF12L1 Missense_Mutation p.P134R 0.18 deleterious(0) probably_damaging(0.984) TCGA-CV-7255-01 X 18949759 18949759 C A PHKA2 Missense_Mutation p.E415D 0.18 tolerated(0.12) benign(0.414) TCGA-CV-7255-01 X 37984588 37984588 A G SYTL5 Missense_Mutation p.K649E 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7255-01 X 49957377 49957377 C A AKAP4 Missense_Mutation p.A663S 0.17 tolerated(0.68) benign(0.006) TCGA-CV-7255-01 X 54955308 54955308 C A TRO Silent p.A717A 0.36 TCGA-CV-7255-01 X 57619372 57619372 C T ZXDB Silent p.S297S 0.25 TCGA-CV-7255-01 X 57936696 57936696 G A ZXDA Silent p.G53G 0.37 TCGA-CV-7255-01 X 77112872 77112872 G A MAGT1 Silent p.A203A 0.30 TCGA-CV-7255-01 X 79978124 79978124 C T BRWD3 Missense_Mutation p.V605I 0.10 deleterious(0.03) possibly_damaging(0.566) TCGA-CV-7261-01 10 107015457 107015457 C A SORCS3 Intron 0.42 TCGA-CV-7261-01 10 124189449 124189449 G A PLEKHA1 Missense_Mutation p.V404M 0.19 deleterious(0) probably_damaging(0.994) TCGA-CV-7261-01 10 129903164 129903164 C G MKI67 Missense_Mutation p.E2314Q 0.19 tolerated(0.07) possibly_damaging(0.905) TCGA-CV-7261-01 10 134660723 134660723 C T TTC40 Missense_Mutation p.E2019K 0.26 tolerated(0.21) benign(0.019) TCGA-CV-7261-01 10 26462739 26462739 C G MYO3A Missense_Mutation p.N1182K 0.15 tolerated(0.12) benign(0.013) TCGA-CV-7261-01 10 70951445 70951445 G T SUPV3L1 Missense_Mutation p.R259L 0.22 deleterious(0.02) benign(0.133) TCGA-CV-7261-01 10 7822113 7822113 G A KIN Silent p.V94V 0.13 TCGA-CV-7261-01 10 82329963 82329963 G T SH2D4B Missense_Mutation p.V80F 0.40 deleterious(0) probably_damaging(0.978) TCGA-CV-7261-01 11 105880416 105880416 G A MSANTD4 Missense_Mutation p.T295I 0.09 tolerated(0.06) benign(0.17) TCGA-CV-7261-01 11 111746387 111746387 C A FDXACB1 Missense_Mutation p.Q378H 0.06 deleterious(0) possibly_damaging(0.45) TCGA-CV-7261-01 11 115047127 115047127 A G CADM1 3'UTR 0.23 TCGA-CV-7261-01 11 26587444 26587444 C T MUC15 Splice_Site p.X15_splice 0.20 TCGA-CV-7261-01 11 30033487 30033487 C A KCNA4 Missense_Mutation p.V247F 0.05 deleterious(0) probably_damaging(1) TCGA-CV-7261-01 11 55135451 55135451 T C OR4A15 Missense_Mutation p.M31T 0.13 deleterious_low_confidence(0) benign(0.126) TCGA-CV-7261-01 11 55703122 55703122 A G OR5I1 Missense_Mutation p.I252T 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7261-01 11 5776833 5776833 C A OR52N4 Missense_Mutation p.P288H 0.57 deleterious(0) probably_damaging(0.995) TCGA-CV-7261-01 11 58322350 58322350 A G LPXN Silent p.D99D 0.11 TCGA-CV-7261-01 11 6452915 6452915 G A HPX Missense_Mutation p.A362V 0.58 deleterious(0) probably_damaging(0.976) TCGA-CV-7261-01 11 67265032 67265032 C T PITPNM1 Missense_Mutation p.S634N 0.08 tolerated(0.13) benign(0.014) TCGA-CV-7261-01 11 7324589 7324589 G A SYT9 Silent p.Q155Q 0.41 TCGA-CV-7261-01 11 75280100 75280100 C T SERPINH1 Missense_Mutation p.R280C 0.44 deleterious(0) probably_damaging(0.977) TCGA-CV-7261-01 12 100173680 100173680 C T ANKS1B Silent p.Q272Q 0.35 TCGA-CV-7261-01 12 110788113 110788113 G T ATP2A2 3'Flank 0.19 TCGA-CV-7261-01 12 12917664 12917664 C T APOLD1 Intron 0.09 TCGA-CV-7261-01 12 49431982 49431983 - A KMT2D Frame_Shift_Ins p.T3053Yfs*2 0.26 TCGA-CV-7261-01 12 51851197 51851197 C T SLC4A8 Missense_Mutation p.R213W 0.13 deleterious(0.03) benign(0.054) TCGA-CV-7261-01 12 8757850 8757850 G A AICDA Missense_Mutation p.H130Y 0.50 deleterious(0.01) possibly_damaging(0.461) TCGA-CV-7261-01 13 101726002 101726002 T A NALCN Missense_Mutation p.K1377N 0.13 tolerated(0.63) benign(0.03) TCGA-CV-7261-01 14 100793680 100793680 C G SLC25A47 Silent p.L100L 0.22 TCGA-CV-7261-01 14 20404652 20404652 C G OR4K1 Missense_Mutation p.T276S 0.03 tolerated(0.25) possibly_damaging(0.73) TCGA-CV-7261-01 14 23346447 23346447 T C LRP10 Missense_Mutation p.I618T 0.04 tolerated(0.47) benign(0.001) TCGA-CV-7261-01 14 36840687 36840687 C T DPPA3P2 RNA 0.11 TCGA-CV-7261-01 14 51237120 51237120 C A NIN Missense_Mutation p.A474S 0.12 tolerated(0.5) benign(0.386) TCGA-CV-7261-01 14 66136078 66136078 C T FUT8 Nonsense_Mutation p.R239* 0.24 TCGA-CV-7261-01 15 35086901 35086901 C T ACTC1 Missense_Mutation p.V37M 0.29 deleterious_low_confidence(0.02) probably_damaging(0.926) TCGA-CV-7261-01 15 53907901 53907901 C G WDR72 Missense_Mutation p.L834F 0.10 deleterious(0) benign(0.003) TCGA-CV-7261-01 15 58933155 58933155 T C ADAM10 Missense_Mutation p.N278S 0.07 deleterious(0.02) benign(0.069) TCGA-CV-7261-01 15 58971446 58971446 C G ADAM10 Missense_Mutation p.D121H 0.08 deleterious(0) possibly_damaging(0.564) TCGA-CV-7261-01 15 60297874 60297874 T C FOXB1 Missense_Mutation p.Y238H 0.43 deleterious(0) possibly_damaging(0.598) TCGA-CV-7261-01 15 67687836 67687836 C T IQCH Missense_Mutation p.R614C 0.12 deleterious(0) possibly_damaging(0.857) TCGA-CV-7261-01 16 10995979 10995979 C T CIITA Missense_Mutation p.A189V 0.09 tolerated(0.4) benign(0.064) TCGA-CV-7261-01 16 1561083 1561083 C T IFT140 Silent p.P1417P 0.44 TCGA-CV-7261-01 16 15715663 15715663 A G KIAA0430 Missense_Mutation p.Y856H 0.38 tolerated(0.25) benign(0.004) TCGA-CV-7261-01 16 319529 319529 G A RGS11 Missense_Mutation p.A421V 0.50 deleterious(0) probably_damaging(0.997) TCGA-CV-7261-01 16 65026844 65026844 G A CDH11 Missense_Mutation p.P206L 0.09 deleterious(0.01) probably_damaging(0.974) TCGA-CV-7261-01 16 82032990 82032990 C A SDR42E1 Missense_Mutation p.R303L 0.51 tolerated(0.05) benign(0.217) TCGA-CV-7261-01 17 39927914 39927914 C G JUP Missense_Mutation p.V65L 0.30 tolerated(0.65) benign(0.001) TCGA-CV-7261-01 17 41020616 41020616 C T AOC4P RNA 0.14 TCGA-CV-7261-01 17 44110827 44110827 C T KANSL1 Splice_Site p.X889_splice 0.29 TCGA-CV-7261-01 17 4883671 4883671 C T CAMTA2 Missense_Mutation p.G339R 0.62 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CV-7261-01 17 7137669 7137669 G A DVL2 5'UTR 0.66 TCGA-CV-7261-01 17 79804356 79804356 C T P4HB Silent p.T335T 0.26 TCGA-CV-7261-01 18 43249308 43249308 A C SLC14A2 Missense_Mutation p.K692Q 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7261-01 19 1105714 1105714 G C GPX4 Missense_Mutation p.D128H 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-CV-7261-01 19 12244792 12244792 C T ZNF20 Missense_Mutation p.R70K 0.26 tolerated(0.17) benign(0) TCGA-CV-7261-01 19 13345741 13345741 A G CACNA1A Missense_Mutation p.L1748P 0.27 benign(0.102) TCGA-CV-7261-01 19 13414674 13414674 C T CACNA1A Missense_Mutation p.E671K 0.08 possibly_damaging(0.81) TCGA-CV-7261-01 19 15366308 15366308 C T BRD4 Missense_Mutation p.R616Q 0.20 benign(0.238) TCGA-CV-7261-01 19 16860942 16860942 G A NWD1 Missense_Mutation p.G497R 0.06 tolerated(0.54) benign(0.022) TCGA-CV-7261-01 19 19749068 19749068 C T GMIP Missense_Mutation p.R230H 0.47 tolerated(0.06) possibly_damaging(0.834) TCGA-CV-7261-01 19 39019040 39019040 C T RYR1 Missense_Mutation p.P3640L 0.10 benign(0.007) TCGA-CV-7261-01 19 39138522 39138522 C T ACTN4 Missense_Mutation p.P46L 0.31 deleterious(0.03) possibly_damaging(0.604) TCGA-CV-7261-01 19 41209448 41209448 G A ADCK4 Missense_Mutation p.A266V 0.65 deleterious(0.01) benign(0.045) TCGA-CV-7261-01 19 50549349 50549349 T A ZNF473 Missense_Mutation p.I550N 0.13 deleterious(0.04) benign(0.308) TCGA-CV-7261-01 19 50549350 50549350 C G ZNF473 Missense_Mutation p.I550M 0.13 deleterious(0.03) benign(0.308) TCGA-CV-7261-01 19 9045870 9045870 C A MUC16 Nonsense_Mutation p.E11921* 0.36 TCGA-CV-7261-01 1 117131576 117131576 C G IGSF3 Missense_Mutation p.G747A 0.24 tolerated(0.5) benign(0.26) TCGA-CV-7261-01 1 147092754 147092754 T A BCL9 Silent p.P931P 0.12 TCGA-CV-7261-01 1 156616600 156616600 C T BCAN Silent p.R33R 0.19 TCGA-CV-7261-01 1 156640375 156640375 G A NES Missense_Mutation p.P1202L 0.04 deleterious(0.01) possibly_damaging(0.642) TCGA-CV-7261-01 1 157776893 157776893 G A FCRL1 Silent p.A17A 0.16 TCGA-CV-7261-01 1 158262428 158262428 C T CD1C Missense_Mutation p.S218F 0.08 deleterious(0) possibly_damaging(0.77) TCGA-CV-7261-01 1 159409809 159409809 C T OR10J1 Silent p.V87V 0.08 TCGA-CV-7261-01 1 197390386 197390386 C T CRB1 Silent p.T476T 0.16 TCGA-CV-7261-01 1 213436131 213436131 C G RPS6KC1 Missense_Mutation p.S1021C 0.33 deleterious(0.01) probably_damaging(1) TCGA-CV-7261-01 1 22313089 22313089 C G CELA3B Silent p.T236T 0.26 TCGA-CV-7261-01 1 248028119 248028119 C A TRIM58 Missense_Mutation p.A210E 0.29 tolerated(1) benign(0.028) TCGA-CV-7261-01 1 43917246 43917246 C T SZT2 3'UTR 0.30 TCGA-CV-7261-01 20 15843468 15843468 G A MACROD2 Missense_Mutation p.V242I 0.20 tolerated(0.36) benign(0) TCGA-CV-7261-01 20 9546783 9546783 C T PAK7 Silent p.P413P 0.30 TCGA-CV-7261-01 21 10952943 10952943 A C TPTE Missense_Mutation p.V85G 0.19 tolerated(0.05) possibly_damaging(0.545) TCGA-CV-7261-01 22 22127164 22127164 C A MAPK1 Nonsense_Mutation p.E322* 0.37 TCGA-CV-7261-01 2 107040930 107040931 - A RGPD3 Frame_Shift_Ins p.E1165* 0.25 TCGA-CV-7261-01 2 16082158 16082158 C T MYCN 5'UTR 0.44 TCGA-CV-7261-01 2 168101029 168101029 T C XIRP2 Missense_Mutation p.S1043P 0.32 probably_damaging(1) TCGA-CV-7261-01 2 168102825 168102825 A G XIRP2 Silent p.L1641L 0.20 TCGA-CV-7261-01 2 170062018 170062018 C A LRP2 Missense_Mutation p.E2562D 0.10 benign(0.008) TCGA-CV-7261-01 2 179435389 179435389 C G TTN Missense_Mutation p.R25157P 0.09 TCGA-CV-7261-01 2 179640223 179640223 C T TTN Missense_Mutation p.R2123Q 0.29 TCGA-CV-7261-01 2 203130611 203130611 G C NOP58 5'UTR 0.10 TCGA-CV-7261-01 2 219603790 219603790 A G TTLL4 Missense_Mutation p.N464S 0.50 tolerated(0.29) benign(0.001) TCGA-CV-7261-01 2 219888039 219888039 G A CCDC108 Missense_Mutation p.R904C 0.26 deleterious(0) probably_damaging(0.921) TCGA-CV-7261-01 2 242106562 242106562 G A PPP1R7 Intron 0.64 TCGA-CV-7261-01 2 24905921 24905921 G C NCOA1 Missense_Mutation p.M152I 0.07 tolerated(0.06) possibly_damaging(0.627) TCGA-CV-7261-01 2 43452530 43452530 T A ZFP36L2 Missense_Mutation p.Q138L 0.10 tolerated(0.47) possibly_damaging(0.728) TCGA-CV-7261-01 2 65296555 65296555 C T CEP68 5'UTR 0.14 TCGA-CV-7261-01 2 85133166 85133166 G A TMSB10 Missense_Mutation p.E9K 0.41 deleterious(0.02) benign(0.133) TCGA-CV-7261-01 3 122418794 122418794 C A PARP14 Missense_Mutation p.Q465K 0.52 deleterious(0.03) benign(0.242) TCGA-CV-7261-01 3 124431825 124431825 C A KALRN Missense_Mutation p.R1010S 0.23 deleterious(0.01) possibly_damaging(0.675) TCGA-CV-7261-01 3 126747877 126747877 G T PLXNA1 Nonsense_Mutation p.E1571* 0.27 TCGA-CV-7261-01 3 1415634 1415634 T C CNTN6 Missense_Mutation p.Y658H 0.10 tolerated(0.59) benign(0.007) TCGA-CV-7261-01 3 142987754 142987754 G A SLC9A9 Missense_Mutation p.P558L 0.04 tolerated(0.16) probably_damaging(0.999) TCGA-CV-7261-01 3 164727148 164727148 G A SI Silent p.F1366F 0.56 TCGA-CV-7261-01 3 178922325 178922325 A T PIK3CA Missense_Mutation p.E365V 0.25 deleterious(0) probably_damaging(0.993) TCGA-CV-7261-01 3 183535795 183535795 C T MAP6D1 Missense_Mutation p.G169E 0.48 tolerated(0.25) probably_damaging(0.927) TCGA-CV-7261-01 3 193171990 193171990 A C ATP13A4 Missense_Mutation p.F643V 0.08 deleterious(0.01) possibly_damaging(0.908) TCGA-CV-7261-01 3 46449784 46449784 G A CCRL2 Missense_Mutation p.V84M 0.41 tolerated(0.12) benign(0.226) TCGA-CV-7261-01 3 50103889 50103889 A T RBM6 Missense_Mutation p.N966I 0.44 deleterious(0) probably_damaging(0.998) TCGA-CV-7261-01 4 110687902 110687902 C T CFI Missense_Mutation p.V46I 0.08 tolerated(0.07) possibly_damaging(0.831) TCGA-CV-7261-01 4 187155200 187155200 C T KLKB1 Missense_Mutation p.H106Y 0.16 tolerated(0.18) benign(0.039) TCGA-CV-7261-01 4 70513428 70513428 A G UGT2A1 Intron 0.56 TCGA-CV-7261-01 5 161580208 161580208 A G GABRG2 Missense_Mutation p.D461G 0.14 tolerated(0.15) possibly_damaging(0.637) TCGA-CV-7261-01 5 45262058 45262058 C T HCN1 Missense_Mutation p.D880N 0.04 tolerated_low_confidence(0.13) benign(0.023) TCGA-CV-7261-01 6 117216368 117216368 G A RFX6 Missense_Mutation p.E224K 0.26 tolerated(0.1) possibly_damaging(0.742) TCGA-CV-7261-01 6 126080846 126080846 C T HEY2 Silent p.S304S 0.35 TCGA-CV-7261-01 6 126080849 126080849 G T HEY2 Silent p.P305P 0.35 TCGA-CV-7261-01 6 133783512 133783512 A G EYA4 Silent p.T159T 0.20 TCGA-CV-7261-01 6 144508185 144508185 C A STX11 Missense_Mutation p.R141S 0.32 tolerated(0.41) benign(0.004) TCGA-CV-7261-01 6 41166104 41166104 T G TREML2 Missense_Mutation p.Q40P 0.04 deleterious(0.01) probably_damaging(0.977) TCGA-CV-7261-01 6 89926972 89926972 T A GABRR1 Missense_Mutation p.S24C 0.26 tolerated_low_confidence(0.25) benign(0.002) TCGA-CV-7261-01 7 106508169 106508169 G A PIK3CG Missense_Mutation p.E55K 0.41 deleterious(0.02) benign(0.048) TCGA-CV-7261-01 7 149506138 149506138 G - SSPO RNA 0.27 TCGA-CV-7261-01 7 150846025 150846025 G T GBX1 Missense_Mutation p.A248E 0.08 tolerated(0.18) benign(0.006) TCGA-CV-7261-01 7 38247206 38247206 T A STARD3NL Missense_Mutation p.M34K 0.64 tolerated(0.29) benign(0.03) TCGA-CV-7261-01 7 42065866 42065866 G T GLI3 Missense_Mutation p.P392T 0.48 tolerated(0.09) benign(0.125) TCGA-CV-7261-01 7 53104106 53104106 T G POM121L12 Missense_Mutation p.C248G 0.07 tolerated(0.26) possibly_damaging(0.765) TCGA-CV-7261-01 7 86394698 86394698 C T GRM3 Silent p.I79I 0.27 TCGA-CV-7261-01 7 87037431 87037431 C A ABCB4 Silent p.L1067L 0.25 TCGA-CV-7261-01 7 87069068 87069068 C A ABCB4 Missense_Mutation p.R549L 0.06 deleterious(0) probably_damaging(0.943) TCGA-CV-7261-01 8 139190886 139190886 C A FAM135B Silent p.L307L 0.36 TCGA-CV-7261-01 8 145694974 145694974 C T KIFC2 Missense_Mutation p.R442C 0.17 deleterious(0) possibly_damaging(0.873) TCGA-CV-7261-01 8 26627526 26627526 T A ADRA1A Intron 0.31 TCGA-CV-7261-01 8 39624380 39624380 G A ADAM2 Silent p.D498D 0.13 TCGA-CV-7261-01 8 55534743 55534743 A T RP1 Nonsense_Mutation p.K228* 0.35 TCGA-CV-7261-01 8 77896342 77896342 G T PEX2 Missense_Mutation p.L25I 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-7261-01 8 86027454 86027454 G A LRRCC1 Missense_Mutation p.G222S 0.39 tolerated(0.18) benign(0.015) TCGA-CV-7261-01 8 88885295 88885295 G A DCAF4L2 Missense_Mutation p.T302I 0.42 tolerated(0.09) benign(0.092) TCGA-CV-7261-01 9 131022971 131022971 G A GOLGA2 Nonsense_Mutation p.Q484* 0.29 TCGA-CV-7261-01 9 131456200 131456200 G C SET Missense_Mutation p.G243A 0.13 tolerated(0.36) unknown(0) TCGA-CV-7261-01 9 136573442 136573442 G A SARDH Silent p.A479A 0.08 TCGA-CV-7261-01 9 84530532 84530532 C T SPATA31D5P RNA 0.26 TCGA-CV-7261-01 X 102864401 102864403 GAG - TCEAL3 In_Frame_Del p.E138del 0.52 TCGA-CV-7261-01 X 115304382 115304382 G C AGTR2 Missense_Mutation p.W283C 0.11 tolerated(0.18) possibly_damaging(0.885) TCGA-CV-7261-01 X 69673592 69673592 A G DLG3 Silent p.G417G 0.25 TCGA-CV-7263-01 10 116196002 116196002 C T ABLIM1 3'UTR 0.12 TCGA-CV-7263-01 10 118030435 118030435 G A GFRA1 Missense_Mutation p.A78V 0.26 tolerated(0.84) benign(0.264) TCGA-CV-7263-01 10 119043244 119043244 C A PDZD8 Missense_Mutation p.K1000N 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7263-01 10 121212266 121212266 C T GRK5 Silent p.D496D 0.26 TCGA-CV-7263-01 10 54528241 54528241 C T MBL2 Missense_Mutation p.G135R 0.15 deleterious(0.02) possibly_damaging(0.8) TCGA-CV-7263-01 10 76788252 76788252 A G KAT6B Missense_Mutation p.M1224V 0.12 benign(0) TCGA-CV-7263-01 10 76797686 76797686 T G DUPD1 Missense_Mutation p.K191Q 0.22 tolerated(0.08) probably_damaging(0.985) TCGA-CV-7263-01 10 98742212 98742212 C T C10orf12 Silent p.P355P 0.30 TCGA-CV-7263-01 11 102480739 102480739 G A MMP20 Silent p.F182F 0.16 TCGA-CV-7263-01 11 117095455 117095455 C T PCSK7 Missense_Mutation p.D293N 0.20 deleterious(0.04) probably_damaging(0.954) TCGA-CV-7263-01 11 117303096 117303096 G A DSCAML1 Silent p.I1777I 0.12 TCGA-CV-7263-01 11 120925792 120925792 T C TBCEL Missense_Mutation p.Y163H 0.16 deleterious(0) possibly_damaging(0.885) TCGA-CV-7263-01 11 124615418 124615418 C T NRGN Missense_Mutation p.P12L 0.13 tolerated(0.99) unknown(0) TCGA-CV-7263-01 11 1272638 1272638 G A MUC5B Missense_Mutation p.G4843E 0.38 unknown(0) TCGA-CV-7263-01 11 55653067 55653067 T G TRIM51 Missense_Mutation p.C55G 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7263-01 11 5757739 5757739 G T OR56B1 5'UTR 0.18 TCGA-CV-7263-01 11 60184515 60184515 G A MS4A14 3'UTR 0.16 TCGA-CV-7263-01 11 64519456 64519456 G A PYGM Missense_Mutation p.R570W 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7263-01 11 67134940 67134940 A T CLCF1 Silent p.A58A 0.35 TCGA-CV-7263-01 12 101295618 101295618 G A ANO4 Missense_Mutation p.V19M 0.30 tolerated_low_confidence(0.23) benign(0.005) TCGA-CV-7263-01 12 113496166 113496166 C T DTX1 Missense_Mutation p.R57C 0.20 deleterious(0) possibly_damaging(0.748) TCGA-CV-7263-01 12 15035958 15035958 C T MGP Missense_Mutation p.A65T 0.23 deleterious(0) probably_damaging(0.97) TCGA-CV-7263-01 12 20782996 20782996 A T PDE3A Missense_Mutation p.L565F 0.38 deleterious(0.02) possibly_damaging(0.703) TCGA-CV-7263-01 12 56506685 56506685 C T PA2G4 3'UTR 0.31 TCGA-CV-7263-01 12 69083344 69083344 T C NUP107 Silent p.N44N 0.28 TCGA-CV-7263-01 14 64522880 64522880 C T SYNE2 Silent p.S3321S 0.20 TCGA-CV-7263-01 15 30008972 30008972 C T TJP1 Missense_Mutation p.E1349K 0.16 deleterious_low_confidence(0.01) benign(0.437) TCGA-CV-7263-01 15 43360173 43360173 C T UBR1 Missense_Mutation p.V241I 0.11 deleterious(0) probably_damaging(0.927) TCGA-CV-7263-01 16 18828771 18828771 T C SMG1 Missense_Mutation p.I3306V 0.18 tolerated(0.13) benign(0.403) TCGA-CV-7263-01 16 27544670 27544670 A T GTF3C1 Missense_Mutation p.V264D 0.28 tolerated(0.75) benign(0.048) TCGA-CV-7263-01 16 618123 618123 G A NHLRC4 Missense_Mutation p.D26N 0.25 tolerated(0.3) probably_damaging(0.996) TCGA-CV-7263-01 17 34077293 34077293 C A GAS2L2 Missense_Mutation p.V144L 0.13 tolerated(0.19) probably_damaging(0.947) TCGA-CV-7263-01 17 39118751 39118751 G A KRT39 Missense_Mutation p.S258F 0.33 deleterious(0) probably_damaging(0.982) TCGA-CV-7263-01 17 40359689 40359689 G T STAT5B Missense_Mutation p.S655Y 0.22 deleterious(0) probably_damaging(0.963) TCGA-CV-7263-01 17 46053298 46053298 C T CDK5RAP3 Silent p.Y239Y 0.11 TCGA-CV-7263-01 17 5290067 5290067 G A NUP88 Missense_Mutation p.A708V 0.40 deleterious(0.05) probably_damaging(0.911) TCGA-CV-7263-01 17 57951968 57951968 G A TUBD1 Missense_Mutation p.T289I 0.12 deleterious(0) possibly_damaging(0.464) TCGA-CV-7263-01 17 70120341 70120341 C T SOX9 Missense_Mutation p.S448F 0.12 deleterious(0) possibly_damaging(0.553) TCGA-CV-7263-01 17 72608823 72608823 T - CD300E Frame_Shift_Del p.N196Tfs*? 0.19 TCGA-CV-7263-01 17 72691292 72691292 G A CD300LF Silent p.H272H 0.26 TCGA-CV-7263-01 17 7579378 7579378 G C TP53 Nonsense_Mutation p.Y103* 0.38 TCGA-CV-7263-01 17 7802768 7802768 G A CHD3 Silent p.T876T 0.34 TCGA-CV-7263-01 17 8398540 8398540 G A MYH10 Missense_Mutation p.S1324F 0.31 benign(0.388) TCGA-CV-7263-01 18 67687941 67687941 C T RTTN Missense_Mutation p.M2021I 0.13 tolerated(0.21) benign(0.001) TCGA-CV-7263-01 18 683302 683302 A C ENOSF1 Missense_Mutation p.W295G 0.32 deleterious(0) probably_damaging(1) TCGA-CV-7263-01 18 6956637 6956637 G A LAMA1 Missense_Mutation p.P2698S 0.14 deleterious(0.03) benign(0.016) TCGA-CV-7263-01 19 14593541 14593541 T C GIPC1 Missense_Mutation p.Y83C 0.23 deleterious(0) benign(0.319) TCGA-CV-7263-01 19 23414137 23414137 T A ZNF724P Missense_Mutation p.I53F 0.23 deleterious(0.02) possibly_damaging(0.507) TCGA-CV-7263-01 19 41931416 41931416 G A B3GNT8 3'UTR 0.47 TCGA-CV-7263-01 19 54080198 54080198 G A ZNF331 Silent p.E128E 0.30 TCGA-CV-7263-01 19 55995287 55995287 G A ZNF628 Silent p.A909A 0.40 TCGA-CV-7263-01 19 7916351 7916351 G A EVI5L Missense_Mutation p.R262H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7263-01 1 114267424 114267424 C T PHTF1 Missense_Mutation p.V194I 0.37 tolerated(0.41) benign(0) TCGA-CV-7263-01 1 11854027 11854027 G A MTHFR Silent p.N489N 0.31 TCGA-CV-7263-01 1 119683180 119683180 G A WARS2 Nonsense_Mutation p.Q30* 0.15 TCGA-CV-7263-01 1 155026854 155026854 G T ADAM15 Missense_Mutation p.G162C 0.15 deleterious(0.01) probably_damaging(0.972) TCGA-CV-7263-01 1 158669807 158669807 C T OR6K2 Silent p.V212V 0.19 TCGA-CV-7263-01 1 179079732 179079732 C G ABL2 Intron 0.31 TCGA-CV-7263-01 1 183106849 183106849 G A LAMC1 Missense_Mutation p.V1454I 0.16 deleterious(0.02) benign(0.11) TCGA-CV-7263-01 1 198665840 198665840 G A PTPRC Splice_Site p.X34_splice 0.27 TCGA-CV-7263-01 1 228548417 228548417 C T OBSCN Intron 0.35 TCGA-CV-7263-01 1 23707823 23707823 T A TCEA3 3'UTR 0.32 TCGA-CV-7263-01 1 36785374 36785374 C T SH3D21 Silent p.N370N 0.32 TCGA-CV-7263-01 1 46096158 46096158 G A GPBP1L1 Missense_Mutation p.H389Y 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-CV-7263-01 1 46096159 46096159 C A GPBP1L1 Missense_Mutation p.E388D 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-CV-7263-01 1 46751227 46751227 T C LRRC41 Silent p.E434E 0.34 TCGA-CV-7263-01 1 47279983 47279983 C T CYP4B1 Missense_Mutation p.A293V 0.41 tolerated(0.07) benign(0.034) TCGA-CV-7263-01 1 52940829 52940829 G C ZCCHC11 Missense_Mutation p.S801C 0.14 tolerated(0.15) benign(0.004) TCGA-CV-7263-01 1 77806144 77806144 A G AK5 Missense_Mutation p.Q261R 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-CV-7263-01 1 97236288 97236288 G A PTBP2 Missense_Mutation p.E105K 0.28 deleterious(0.03) probably_damaging(0.995) TCGA-CV-7263-01 20 30388951 30388951 C T TPX2 3'UTR 0.41 TCGA-CV-7263-01 20 35515884 35515884 T - TLDC2 Frame_Shift_Del p.F156Sfs*3 0.17 TCGA-CV-7263-01 20 43385559 43385559 G A RIMS4 Missense_Mutation p.P192S 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-7263-01 20 6759194 6759194 A G BMP2 Missense_Mutation p.T217A 0.08 tolerated(0.73) probably_damaging(0.982) TCGA-CV-7263-01 20 744241 744241 G A SLC52A3 Missense_Mutation p.S325F 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-7263-01 21 33060638 33060639 - A SCAF4 Frame_Shift_Ins p.T676Nfs*98 0.19 TCGA-CV-7263-01 22 20127348 20127348 G A ZDHHC8 Missense_Mutation p.V164M 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7263-01 22 31688261 31688261 C T PIK3IP1 Missense_Mutation p.G24S 0.28 deleterious(0.04) benign(0.424) TCGA-CV-7263-01 22 32545757 32545757 C T C22orf42 Missense_Mutation p.R222K 0.16 tolerated_low_confidence(0.27) benign(0.14) TCGA-CV-7263-01 22 45959162 45959162 C T FBLN1 Intron 0.14 TCGA-CV-7263-01 22 50654274 50654274 T C SELO Missense_Mutation p.F494L 0.26 tolerated(0.65) benign(0.008) TCGA-CV-7263-01 2 131890487 131890487 T C PLEKHB2 Missense_Mutation p.S116P 0.26 tolerated(0.51) benign(0.039) TCGA-CV-7263-01 2 136570169 136570169 G A LCT Missense_Mutation p.R689C 0.26 deleterious(0) probably_damaging(0.967) TCGA-CV-7263-01 2 149806405 149806405 A G KIF5C Missense_Mutation p.N256S 0.16 deleterious(0) probably_damaging(1) TCGA-CV-7263-01 2 171573597 171573597 A C SP5 Missense_Mutation p.K294Q 0.25 deleterious(0.01) benign(0.403) TCGA-CV-7263-01 2 172942597 172942597 T C METAP1D Silent p.H259H 0.33 TCGA-CV-7263-01 2 176945464 176945464 C T EVX2 Missense_Mutation p.A268T 0.12 deleterious(0.03) possibly_damaging(0.842) TCGA-CV-7263-01 2 178388494 178388494 A G AGPS Missense_Mutation p.I606V 0.24 tolerated(0.06) possibly_damaging(0.759) TCGA-CV-7263-01 2 206988923 206988923 G A NDUFS1 Missense_Mutation p.P738S 0.24 tolerated_low_confidence(0.06) benign(0.024) TCGA-CV-7263-01 2 220098107 220098107 C T ANKZF1 Silent p.H257H 0.25 TCGA-CV-7263-01 2 231775802 231775802 T C GPR55 5'UTR 0.35 TCGA-CV-7263-01 2 233272011 233272011 C T ALPPL2 Missense_Mutation p.T67M 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7263-01 2 50149201 50149201 G A NRXN1 Nonsense_Mutation p.R1509* 0.37 TCGA-CV-7263-01 2 5833737 5833737 A T SOX11 Missense_Mutation p.D295V 0.38 deleterious(0) benign(0.348) TCGA-CV-7263-01 2 86831161 86831161 A C RNF103 Missense_Mutation p.C621W 0.11 deleterious(0) probably_damaging(1) TCGA-CV-7263-01 3 111686631 111686631 T A PHLDB2 Missense_Mutation p.I1092K 0.19 deleterious(0) probably_damaging(0.922) TCGA-CV-7263-01 3 122128726 122128726 A T FAM162A 3'UTR 0.22 TCGA-CV-7263-01 3 126752808 126752808 G A PLXNA1 Missense_Mutation p.R1880Q 0.23 deleterious(0) benign(0.295) TCGA-CV-7263-01 3 182554302 182554302 G T ATP11B Intron 0.22 TCGA-CV-7263-01 3 186953699 186953699 C T MASP1 Missense_Mutation p.E654K 0.16 deleterious(0.01) probably_damaging(0.91) TCGA-CV-7263-01 3 195703964 195703964 G A SDHAP1 RNA 0.23 TCGA-CV-7263-01 3 47618893 47618893 A T CSPG5 Missense_Mutation p.I208N 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7263-01 3 49933239 49933239 C T MST1R Silent p.T957T 0.12 TCGA-CV-7263-01 3 52439912 52439913 TG - BAP1 Frame_Shift_Del p.Q267Afs*16 0.25 TCGA-CV-7263-01 4 153251878 153251886 AGTTACCTT - FBXW7 Splice_Site p.X374_splice 0.54 TCGA-CV-7263-01 4 159573014 159573014 G A RXFP1 Missense_Mutation p.R694Q 0.27 tolerated(1) benign(0) TCGA-CV-7263-01 4 1746264 1746264 A G TACC3 Missense_Mutation p.K748R 0.63 tolerated(0.12) benign(0.327) TCGA-CV-7263-01 4 187540845 187540845 C A FAT1 Nonsense_Mutation p.G2299* 0.60 TCGA-CV-7263-01 4 26407892 26407892 G A RBPJ Missense_Mutation p.R65K 0.60 deleterious(0.02) possibly_damaging(0.618) TCGA-CV-7263-01 4 70080272 70080272 C G UGT2B11 Missense_Mutation p.A57P 0.07 tolerated(0.08) probably_damaging(0.982) TCGA-CV-7263-01 4 86195 86195 G C Z95704.2 RNA 0.59 TCGA-CV-7263-01 5 13817734 13817734 C T DNAH5 Missense_Mutation p.R2304Q 0.36 possibly_damaging(0.553) TCGA-CV-7263-01 5 140627590 140627590 T A PCDHB15 3'UTR 0.40 TCGA-CV-7263-01 5 16682073 16682073 C T MYO10 Missense_Mutation p.A1366T 0.16 tolerated(0.44) probably_damaging(0.99) TCGA-CV-7263-01 5 19839096 19839096 T G CDH18 5'UTR 0.21 TCGA-CV-7263-01 5 70927976 70927976 C T MCCC2 Missense_Mutation p.S256F 0.20 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-CV-7263-01 6 108502785 108502785 C T NR2E1 Missense_Mutation p.R309W 0.21 deleterious(0.01) possibly_damaging(0.875) TCGA-CV-7263-01 6 118880042 118880042 T A PLN 5'UTR 0.33 TCGA-CV-7263-01 6 165806230 165806230 G A PDE10A Missense_Mutation p.R521W 0.10 deleterious(0) probably_damaging(0.947) TCGA-CV-7263-01 6 26027417 26027417 C T HIST1H4B Missense_Mutation p.V22M 0.12 deleterious(0) probably_damaging(0.95) TCGA-CV-7263-01 6 27839984 27839984 T A HIST1H3I Missense_Mutation p.K37M 0.19 deleterious_low_confidence(0.01) benign(0.164) TCGA-CV-7263-01 6 36106785 36106785 T C MAPK13 Missense_Mutation p.F324S 0.27 deleterious(0.01) benign(0.339) TCGA-CV-7263-01 6 4052307 4052307 G A PRPF4B Missense_Mutation p.C764Y 0.33 deleterious(0) unknown(0) TCGA-CV-7263-01 7 102453908 102453908 A G FBXL13 Missense_Mutation p.F697L 0.09 tolerated(0.26) benign(0.027) TCGA-CV-7263-01 7 142997481 142997481 G A CASP2 Intron 0.25 TCGA-CV-7263-01 7 150556008 150556008 C T AOC1 Silent p.Y576Y 0.16 TCGA-CV-7263-01 7 154172049 154172049 G T DPP6 Missense_Mutation p.K128N 0.26 tolerated(0.15) probably_damaging(0.966) TCGA-CV-7263-01 7 154561189 154561189 G A DPP6 Missense_Mutation p.A316T 0.15 deleterious(0.01) probably_damaging(0.964) TCGA-CV-7263-01 7 27224479 27224479 C A HOXA11 Missense_Mutation p.Q95H 0.21 deleterious(0.03) benign(0.074) TCGA-CV-7263-01 7 6731206 6731206 T C ZNF12 Missense_Mutation p.Y456C 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7263-01 7 72412464 72412464 G A POM121 Silent p.P379P 0.47 TCGA-CV-7263-01 7 82585666 82585666 A G PCLO Missense_Mutation p.S1535P 0.07 unknown(0) TCGA-CV-7263-01 7 88964789 88964789 C T ZNF804B Silent p.N831N 0.24 TCGA-CV-7263-01 8 121706116 121706116 T C SNTB1 Missense_Mutation p.K202E 0.20 deleterious(0) benign(0.041) TCGA-CV-7263-01 8 133596002 133596002 G A LRRC6 Nonsense_Mutation p.Q389* 0.41 TCGA-CV-7263-01 8 39775722 39775722 G A IDO1 Missense_Mutation p.R100H 0.16 tolerated(0.12) possibly_damaging(0.726) TCGA-CV-7263-01 8 70674022 70674022 A G SLCO5A1 Silent p.N332N 0.07 TCGA-CV-7263-01 9 125330736 125330736 G T OR1L8 Silent p.T7T 0.13 TCGA-CV-7263-01 9 131247076 131247076 A T ODF2 Missense_Mutation p.S401C 0.24 deleterious(0) possibly_damaging(0.556) TCGA-CV-7263-01 9 139273385 139273385 G A SNAPC4 Missense_Mutation p.T965I 0.40 tolerated(0.17) benign(0.095) TCGA-CV-7263-01 9 33294473 33294473 T A NFX1 Missense_Mutation p.N27K 0.44 tolerated_low_confidence(0.41) benign(0.002) TCGA-CV-7263-01 9 79955422 79955422 G A VPS13A Missense_Mutation p.A2328T 0.24 tolerated(0.12) benign(0.032) TCGA-CV-7263-01 9 95147858 95147858 A T OGN 3'UTR 0.61 TCGA-CV-7263-01 X 100183281 100183281 A G XKRX Missense_Mutation p.Y5H 0.52 tolerated_low_confidence(0.21) benign(0.172) TCGA-CV-7263-01 X 27839869 27839869 T A MAGEB10 Missense_Mutation p.F149Y 0.43 deleterious(0.05) possibly_damaging(0.782) TCGA-CV-7263-01 X 70350030 70350030 A G MED12 Missense_Mutation p.N1338S 0.15 benign(0.053) TCGA-CV-7406-01 10 102510539 102510539 G T PAX2 Nonsense_Mutation p.E101* 0.47 TCGA-CV-7406-01 10 120917539 120917539 C A SFXN4 Missense_Mutation p.K132N 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-CV-7406-01 10 120917544 120917544 T A SFXN4 Missense_Mutation p.I131F 0.14 deleterious(0.01) benign(0.229) TCGA-CV-7406-01 10 29821993 29821993 C T SVIL Missense_Mutation p.E435K 0.51 tolerated(0.38) benign(0.01) TCGA-CV-7406-01 10 35929479 35929479 G A FZD8 Silent p.F293F 0.42 TCGA-CV-7406-01 10 37482137 37482137 T - ANKRD30A Frame_Shift_Del p.I800Ffs*6 0.11 TCGA-CV-7406-01 10 3822362 3822362 C G KLF6 Missense_Mutation p.E246Q 0.23 deleterious(0) benign(0.315) TCGA-CV-7406-01 10 61012605 61012605 C T FAM13C Missense_Mutation p.V496I 0.06 tolerated(0.61) benign(0.007) TCGA-CV-7406-01 11 102593222 102593222 G A MMP8 Silent p.D95D 0.54 TCGA-CV-7406-01 11 35223298 35223298 C T CD44 Missense_Mutation p.H373Y 0.11 tolerated(0.56) benign(0.445) TCGA-CV-7406-01 11 5142643 5142643 C T OR52A4 RNA 0.28 TCGA-CV-7406-01 11 5290881 5290881 G T HBE1 Missense_Mutation p.Q40K 0.28 deleterious(0.02) possibly_damaging(0.471) TCGA-CV-7406-01 11 55606668 55606668 G A OR5D16 Silent p.V147V 0.27 TCGA-CV-7406-01 11 7689018 7689018 G A CYB5R2 Missense_Mutation p.R167C 0.22 deleterious(0) probably_damaging(1) TCGA-CV-7406-01 11 94861543 94861543 C T ENDOD1 Silent p.I101I 0.19 TCGA-CV-7406-01 12 106708240 106708240 C T TCP11L2 Nonsense_Mutation p.Q88* 0.18 TCGA-CV-7406-01 12 11546807 11546807 G C PRB2 Missense_Mutation p.Q69E 0.12 tolerated(0.06) unknown(0) TCGA-CV-7406-01 12 132325377 132325377 G A MMP17 Missense_Mutation p.E228K 0.21 deleterious(0) probably_damaging(0.986) TCGA-CV-7406-01 12 15742398 15742398 G A PTPRO Silent p.V1140V 0.26 TCGA-CV-7406-01 12 21531394 21531394 T G IAPP 3'UTR 0.17 TCGA-CV-7406-01 12 43847849 43847849 G T ADAMTS20 Missense_Mutation p.R541S 0.20 tolerated(0.12) benign(0.392) TCGA-CV-7406-01 12 53470909 53470909 C T SPRYD3 Missense_Mutation p.D54N 0.27 deleterious(0.02) benign(0.01) TCGA-CV-7406-01 12 54367025 54367025 G A HOXC11 5'UTR 0.22 TCGA-CV-7406-01 12 57492348 57492348 A G STAT6 Missense_Mutation p.I700T 0.05 deleterious(0.04) benign(0.033) TCGA-CV-7406-01 12 57994655 57994655 G A PIP4K2C Missense_Mutation p.R292Q 0.31 deleterious(0.01) benign(0.272) TCGA-CV-7406-01 12 70824480 70824480 C T KCNMB4 3'UTR 0.48 TCGA-CV-7406-01 12 8212581 8212581 C T C3AR1 Silent p.A67A 0.10 TCGA-CV-7406-01 12 8758041 8758041 G A AICDA Missense_Mutation p.S66L 0.11 tolerated(0.07) benign(0.073) TCGA-CV-7406-01 12 97345265 97345265 C T NEDD1 Missense_Mutation p.H630Y 0.24 tolerated(0.7) probably_damaging(0.982) TCGA-CV-7406-01 13 114149919 114149919 T G TMCO3 Missense_Mutation p.F8C 0.06 tolerated_low_confidence(0.21) benign(0.001) TCGA-CV-7406-01 13 33684190 33684190 G A STARD13 Missense_Mutation p.S956F 0.29 deleterious(0.02) probably_damaging(0.928) TCGA-CV-7406-01 13 47469754 47469754 G C HTR2A Missense_Mutation p.I96M 0.39 deleterious(0) probably_damaging(0.999) TCGA-CV-7406-01 13 67801807 67801807 G A PCDH9 Nonsense_Mutation p.Q256* 0.41 TCGA-CV-7406-01 14 24911789 24911789 C G SDR39U1 Intron 0.46 TCGA-CV-7406-01 14 53251317 53251317 C T GNPNAT1 Missense_Mutation p.D18N 0.91 tolerated(0.07) benign(0.023) TCGA-CV-7406-01 14 80669404 80669404 G A DIO2 Silent p.F186F 0.27 TCGA-CV-7406-01 14 88477470 88477470 C T GPR65 Silent p.L93L 0.35 TCGA-CV-7406-01 14 93709138 93709138 G A BTBD7 Silent p.L960L 0.41 TCGA-CV-7406-01 15 42019556 42019556 C T MGA Silent p.L1203L 0.26 TCGA-CV-7406-01 15 72502754 72502754 G A PKM Silent p.L104L 0.57 TCGA-CV-7406-01 15 75641389 75641389 C T NEIL1 Missense_Mutation p.S48L 0.68 deleterious(0.02) probably_damaging(0.956) TCGA-CV-7406-01 15 90784129 90784129 C T GDPGP1 Intron 0.59 TCGA-CV-7406-01 15 99758831 99758831 C T TTC23 Nonsense_Mutation p.W181* 0.58 TCGA-CV-7406-01 16 2376270 2376270 C T ABCA3 Silent p.R20R 0.63 TCGA-CV-7406-01 16 3614473 3614473 C T NLRC3 Silent p.V202V 0.71 TCGA-CV-7406-01 16 66945110 66945110 C G CDH16 Silent p.T633T 0.32 TCGA-CV-7406-01 16 85106591 85106591 G T KIAA0513 Missense_Mutation p.V164L 0.22 tolerated(0.35) benign(0.071) TCGA-CV-7406-01 17 10301955 10301955 G A MYH8 Silent p.A1328A 0.39 TCGA-CV-7406-01 17 11696943 11696943 G C DNAH9 Missense_Mutation p.D2729H 0.28 benign(0.013) TCGA-CV-7406-01 17 17891328 17891328 G A LRRC48 Silent p.R120R 0.08 TCGA-CV-7406-01 17 40574759 40574759 G A PTRF Silent p.V119V 0.20 TCGA-CV-7406-01 17 40812702 40812702 G A TUBG2 Missense_Mutation p.A126T 0.48 deleterious(0.02) possibly_damaging(0.888) TCGA-CV-7406-01 17 42786685 42786685 C T DBF4B Silent p.L11L 0.30 TCGA-CV-7406-01 17 44374768 44374768 C T LRRC37A Missense_Mutation p.P757S 0.62 tolerated(0.12) benign(0.117) TCGA-CV-7406-01 17 4635163 4635163 G A MED11 Missense_Mutation p.E60K 0.35 deleterious(0) probably_damaging(0.999) TCGA-CV-7406-01 17 4889259 4889259 C A CAMTA2 Missense_Mutation p.K40N 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7406-01 17 5440230 5440230 C T NLRP1 Missense_Mutation p.M967I 0.34 deleterious(0.02) benign(0.007) TCGA-CV-7406-01 17 60342553 60342553 G A TBC1D3P2 3'Flank 0.20 TCGA-CV-7406-01 17 6599185 6599185 C A SLC13A5 Missense_Mutation p.E305D 0.29 tolerated(0.11) probably_damaging(0.969) TCGA-CV-7406-01 17 7156110 7156110 G A ELP5 Missense_Mutation p.R39H 0.09 deleterious(0.04) probably_damaging(1) TCGA-CV-7406-01 17 73389711 73389711 C T GRB2 5'UTR 0.26 TCGA-CV-7406-01 17 76134712 76134712 G A TMC8 Silent p.V574V 0.26 TCGA-CV-7406-01 17 7734149 7734149 T - DNAH2 Frame_Shift_Del p.F4075Sfs*87 0.35 TCGA-CV-7406-01 17 78882729 78882729 G A RPTOR Silent p.K840K 0.25 TCGA-CV-7406-01 17 8006700 8006700 T C ALOXE3 Missense_Mutation p.N765D 0.35 deleterious(0.05) benign(0.409) TCGA-CV-7406-01 17 80863819 80863819 G A TBCD Silent p.P604P 0.42 TCGA-CV-7406-01 18 202939 202939 C T USP14 Silent p.I312I 0.24 TCGA-CV-7406-01 18 31325297 31325297 A C ASXL3 Missense_Mutation p.K1829Q 0.20 probably_damaging(0.999) TCGA-CV-7406-01 18 3880020 3880020 C T DLGAP1 Missense_Mutation p.D17N 0.32 deleterious(0.04) benign(0.319) TCGA-CV-7406-01 18 48584814 48584814 C T SMAD4 Missense_Mutation p.P298S 0.19 tolerated(0.07) benign(0.065) TCGA-CV-7406-01 18 55221509 55221509 G C FECH Missense_Mutation p.Q360E 0.19 tolerated(0.67) benign(0.002) TCGA-CV-7406-01 18 57147439 57147439 G A CCBE1 Missense_Mutation p.L82F 0.51 tolerated(0.12) benign(0.014) TCGA-CV-7406-01 18 61234050 61234050 T C SERPINB12 Missense_Mutation p.S342P 0.19 deleterious(0) probably_damaging(0.996) TCGA-CV-7406-01 19 11135091 11135091 G A SMARCA4 Missense_Mutation p.D1020N 0.38 benign(0.381) TCGA-CV-7406-01 19 19040078 19040078 A T HOMER3 3'UTR 0.19 TCGA-CV-7406-01 19 19637028 19637028 C G NDUFA13 Missense_Mutation p.I44M 0.20 tolerated(0.11) benign(0.016) TCGA-CV-7406-01 19 20728762 20728762 G A ZNF737 Nonsense_Mutation p.R83* 0.12 TCGA-CV-7406-01 19 31767646 31767646 A G TSHZ3 Missense_Mutation p.I1018T 0.29 tolerated(0.32) benign(0.135) TCGA-CV-7406-01 19 40354269 40354269 G A FCGBP Silent p.F5400F 0.17 TCGA-CV-7406-01 19 4171739 4171739 G A CREB3L3 Missense_Mutation p.E387K 0.35 tolerated(0.57) benign(0.041) TCGA-CV-7406-01 19 42221507 42221507 G A CEACAM5 Silent p.P364P 0.15 TCGA-CV-7406-01 19 42510941 42510941 G A GRIK5 Silent p.I631I 0.29 TCGA-CV-7406-01 19 43697409 43697409 C G PSG4 3'UTR 0.28 TCGA-CV-7406-01 19 44222839 44222839 C A IRGC Silent p.L43L 0.42 TCGA-CV-7406-01 19 45655146 45655146 C T NKPD1 3'UTR 0.47 TCGA-CV-7406-01 19 45769536 45769536 G A MARK4 Silent p.L182L 0.44 TCGA-CV-7406-01 19 52919487 52919487 G A ZNF528 Missense_Mutation p.G461E 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7406-01 19 54677887 54677887 G A MBOAT7 Missense_Mutation p.R424W 0.14 deleterious(0) probably_damaging(0.937) TCGA-CV-7406-01 19 54819017 54819017 G C LILRA5 Silent p.L243L 0.20 TCGA-CV-7406-01 19 56422029 56422029 G C NLRP13 Missense_Mutation p.L728V 0.24 tolerated(0.54) benign(0.003) TCGA-CV-7406-01 19 56954105 56954105 C A ZNF667 Missense_Mutation p.G87W 0.15 deleterious(0.04) benign(0.012) TCGA-CV-7406-01 19 57133429 57133429 C T ZNF71 Silent p.I258I 0.23 TCGA-CV-7406-01 19 8619446 8619446 C T MYO1F Missense_Mutation p.E81K 0.32 deleterious(0) probably_damaging(0.998) TCGA-CV-7406-01 19 9024166 9024166 G A MUC16 Missense_Mutation p.S12369L 0.25 benign(0.137) TCGA-CV-7406-01 19 9056817 9056817 G A MUC16 Missense_Mutation p.S10210L 0.19 possibly_damaging(0.504) TCGA-CV-7406-01 1 10715845 10715857 ATCACGTCCTGCT - CASZ1 Frame_Shift_Del p.K505Tfs*60 0.50 TCGA-CV-7406-01 1 109643008 109643008 G A TMEM167B 3'Flank 0.29 TCGA-CV-7406-01 1 160303419 160303419 C T COPA Nonsense_Mutation p.W120* 0.31 TCGA-CV-7406-01 1 169525915 169525915 G A F5 Silent p.I307I 0.16 TCGA-CV-7406-01 1 170959143 170959143 G A MROH9 Missense_Mutation p.D343N 0.21 tolerated(1) benign(0.003) TCGA-CV-7406-01 1 179063234 179063234 C T TOR3A Silent p.L275L 0.18 TCGA-CV-7406-01 1 182835672 182835672 G A DHX9 Missense_Mutation p.E476K 0.27 deleterious(0) probably_damaging(0.975) TCGA-CV-7406-01 1 235634193 235634193 C A B3GALNT2 Missense_Mutation p.D245Y 0.28 deleterious(0) probably_damaging(0.96) TCGA-CV-7406-01 1 246927581 246927581 G A SCCPDH Missense_Mutation p.G342S 0.26 deleterious(0.03) probably_damaging(0.951) TCGA-CV-7406-01 1 248005106 248005106 G T OR11L1 Missense_Mutation p.F31L 0.25 deleterious(0.02) benign(0.042) TCGA-CV-7406-01 1 249211968 249211968 G T PGBD2 Missense_Mutation p.R395S 0.29 deleterious(0) probably_damaging(0.928) TCGA-CV-7406-01 1 25944551 25944551 C T MAN1C1 Missense_Mutation p.A88V 0.36 tolerated(0.32) benign(0.001) TCGA-CV-7406-01 1 44456209 44456209 C T B4GALT2 3'Flank 0.37 TCGA-CV-7406-01 1 52911973 52911973 C G ZCCHC11 Missense_Mutation p.E1219Q 0.28 tolerated(0.06) benign(0.061) TCGA-CV-7406-01 1 54423865 54423865 C A LRRC42 Silent p.R173R 0.12 TCGA-CV-7406-01 1 86919185 86919185 G T CLCA2 Silent p.V763V 0.26 TCGA-CV-7406-01 1 89525943 89525943 G T GBP1 Missense_Mutation p.H85Q 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7406-01 1 89525944 89525944 T G GBP1 Missense_Mutation p.H85P 0.14 deleterious(0) probably_damaging(1) TCGA-CV-7406-01 20 20243630 20243630 C G C20orf26 Missense_Mutation p.Q787E 0.28 tolerated(0.15) benign(0.019) TCGA-CV-7406-01 20 25405913 25405913 G A GINS1 Missense_Mutation p.G133S 0.07 deleterious(0.02) possibly_damaging(0.714) TCGA-CV-7406-01 20 35668562 35668562 G A RBL1 Nonsense_Mutation p.R633* 0.30 TCGA-CV-7406-01 20 372179 372179 G A TRIB3 Silent p.L180L 0.23 TCGA-CV-7406-01 20 45221110 45221110 G C SLC13A3 Missense_Mutation p.L285V 0.19 tolerated(0.15) possibly_damaging(0.874) TCGA-CV-7406-01 20 62221365 62221365 G A GMEB2 3'UTR 0.38 TCGA-CV-7406-01 21 43523904 43523904 C T C21orf128 Missense_Mutation p.R110Q 0.22 tolerated_low_confidence(1) benign(0) TCGA-CV-7406-01 21 43547845 43547845 C T UMODL1 Silent p.F1326F 0.21 TCGA-CV-7406-01 22 23974134 23974134 G A C22orf43 Missense_Mutation p.S26F 0.27 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CV-7406-01 22 24483605 24483605 C T CABIN1 Missense_Mutation p.S1155L 0.29 deleterious(0) benign(0.269) TCGA-CV-7406-01 22 30722748 30722748 G A TBC1D10A Silent p.L41L 0.23 TCGA-CV-7406-01 2 133543004 133543004 G - NCKAP5 Frame_Shift_Del p.C461Afs*12 0.18 TCGA-CV-7406-01 2 158115183 158115183 C - GALNT5 Frame_Shift_Del p.R198Gfs*13 0.20 TCGA-CV-7406-01 2 158115563 158115563 G C GALNT5 Silent p.V323V 0.28 TCGA-CV-7406-01 2 159537250 159537250 G A PKP4 3'UTR 0.21 TCGA-CV-7406-01 2 179449657 179449657 C T TTN Missense_Mutation p.D21571N 0.37 TCGA-CV-7406-01 2 186672489 186672489 G A FSIP2 Silent p.K6241K 0.30 TCGA-CV-7406-01 2 191874723 191874723 G A STAT1 Nonsense_Mutation p.Q3* 0.45 TCGA-CV-7406-01 2 202002465 202002465 G A CFLAR Intron 0.20 TCGA-CV-7406-01 2 202173910 202173910 C T ALS2CR12 Missense_Mutation p.E247K 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7406-01 2 204009620 204009620 G C NBEAL1 Missense_Mutation p.E1687Q 0.43 tolerated(0.33) benign(0.322) TCGA-CV-7406-01 2 71046980 71046980 C T CLEC4F Silent p.P35P 0.27 TCGA-CV-7406-01 2 73898243 73898243 G A ALMS1P RNA 0.24 TCGA-CV-7406-01 2 74734013 74734013 T C PCGF1 Splice_Site p.X67_splice 0.24 TCGA-CV-7406-01 2 79878679 79878679 G A CTNNA2 Intron 0.31 TCGA-CV-7406-01 2 80530936 80530936 G A LRRTM1 Silent p.F3F 0.19 TCGA-CV-7406-01 2 86732871 86732871 C T CHMP3 3'UTR 0.21 TCGA-CV-7406-01 3 100995541 100995541 G C IMPG2 Missense_Mutation p.P184A 0.17 tolerated(0.06) benign(0.005) TCGA-CV-7406-01 3 101571040 101571040 C A NFKBIZ Missense_Mutation p.A134D 0.06 deleterious_low_confidence(0.01) benign(0.032) TCGA-CV-7406-01 3 11059596 11059596 C T SLC6A1 Silent p.C102C 0.32 TCGA-CV-7406-01 3 119528935 119528935 G A NR1I2 Silent p.L114L 0.14 TCGA-CV-7406-01 3 121448138 121448138 G A GOLGB1 Missense_Mutation p.A100V 0.14 probably_damaging(0.999) TCGA-CV-7406-01 3 126735460 126735460 G C PLXNA1 Missense_Mutation p.E1039Q 0.15 tolerated(0.19) possibly_damaging(0.751) TCGA-CV-7406-01 3 127642957 127642957 G A KBTBD12 Silent p.K351K 0.18 TCGA-CV-7406-01 3 137816636 137816636 G T DZIP1L Silent p.I185I 0.15 TCGA-CV-7406-01 3 137956364 137956364 G T ARMC8 Missense_Mutation p.K228N 0.16 tolerated(0.27) benign(0.436) TCGA-CV-7406-01 3 141328818 141328818 T G RASA2 Missense_Mutation p.I810S 0.18 deleterious(0) benign(0.091) TCGA-CV-7406-01 3 142607677 142607677 G A PCOLCE2 Missense_Mutation p.S21L 0.16 deleterious(0.03) benign(0.085) TCGA-CV-7406-01 3 148905959 148905959 G A CP Missense_Mutation p.P582S 0.20 tolerated(0.24) benign(0.039) TCGA-CV-7406-01 3 155560316 155560316 C T SLC33A1 Missense_Mutation p.E290K 0.11 tolerated(0.19) benign(0.032) TCGA-CV-7406-01 3 15613185 15613185 G A HACL1 Missense_Mutation p.A362V 0.14 tolerated(0.28) benign(0.009) TCGA-CV-7406-01 3 167033577 167033577 G C ZBBX Missense_Mutation p.P412R 0.19 deleterious(0) possibly_damaging(0.89) TCGA-CV-7406-01 3 170784400 170784409 ACATCCTTAG - TNIK Frame_Shift_Del p.T1272Rfs*20 0.13 TCGA-CV-7406-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.11 deleterious(0.02) probably_damaging(0.959) TCGA-CV-7406-01 3 183756393 183756393 C T HTR3D Silent p.L372L 0.11 TCGA-CV-7406-01 3 184005699 184005699 C T ECE2 Silent p.F564F 0.20 TCGA-CV-7406-01 3 184104374 184104374 C G CHRD Missense_Mutation p.S676C 0.33 tolerated(0.06) benign(0.01) TCGA-CV-7406-01 3 186917628 186917628 G A RTP1 Missense_Mutation p.G188R 0.21 tolerated(0.11) benign(0.005) TCGA-CV-7406-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.21 tolerated(0.19) possibly_damaging(0.569) TCGA-CV-7406-01 3 194362968 194362968 C G LSG1 Silent p.V602V 0.21 TCGA-CV-7406-01 3 19492809 19492809 C T KCNH8 Missense_Mutation p.R580C 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-7406-01 3 194991445 194991445 G A XXYLT1 Nonsense_Mutation p.Q115* 0.29 TCGA-CV-7406-01 3 46307508 46307508 G C CCR3 Missense_Mutation p.E308Q 0.42 deleterious(0.03) benign(0.444) TCGA-CV-7406-01 3 49694791 49694791 G A BSN Missense_Mutation p.R2601Q 0.29 unknown(0) TCGA-CV-7406-01 3 49898901 49898907 AGTGCAA - CAMKV Frame_Shift_Del p.L136Hfs*20 0.17 TCGA-CV-7406-01 3 51411927 51411927 G A DOCK3 Missense_Mutation p.R1774H 0.25 deleterious_low_confidence(0) benign(0.004) TCGA-CV-7406-01 3 97868899 97868899 A G OR5H14 Missense_Mutation p.T224A 0.24 tolerated(0.43) benign(0.047) TCGA-CV-7406-01 4 155530881 155530881 C T FGG Silent p.Q189Q 0.22 TCGA-CV-7406-01 4 56310930 56310930 C A CLOCK Missense_Mutation p.G521V 0.44 deleterious(0) possibly_damaging(0.649) TCGA-CV-7406-01 4 72397811 72397811 C T SLC4A4 Silent p.I733I 0.25 TCGA-CV-7406-01 4 90034531 90034531 C G TIGD2 Missense_Mutation p.P136A 0.29 tolerated(0.13) benign(0.224) TCGA-CV-7406-01 5 131915735 131915735 G A RAD50 Missense_Mutation p.E245K 0.32 tolerated(0.2) benign(0.151) TCGA-CV-7406-01 5 137803417 137803417 G A EGR1 Missense_Mutation p.D427N 0.27 tolerated(0.12) unknown(0) TCGA-CV-7406-01 5 139192996 139192996 C T PSD2 Silent p.L158L 0.31 TCGA-CV-7406-01 5 140735361 140735361 C T PCDHGA4 Silent p.R198R 0.47 TCGA-CV-7406-01 5 140811312 140811312 C T PCDHGA12 Missense_Mutation p.A329V 0.29 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-CV-7406-01 5 141694650 141694650 G A SPRY4 Silent p.S31S 0.31 TCGA-CV-7406-01 5 14368963 14368963 C G TRIO Silent p.L1007L 0.11 TCGA-CV-7406-01 5 158140039 158140039 C T EBF1 Silent p.V436V 0.32 TCGA-CV-7406-01 5 167645222 167645222 G A TENM2 Silent p.E1442E 0.27 TCGA-CV-7406-01 5 32088427 32088427 C G PDZD2 Missense_Mutation p.P1625A 0.30 tolerated(0.09) benign(0.059) TCGA-CV-7406-01 5 35065157 35065157 C G PRLR 3'UTR 0.32 TCGA-CV-7406-01 5 45353208 45353208 C T HCN1 Silent p.L457L 0.29 TCGA-CV-7406-01 5 71494584 71494584 C T MAP1B Missense_Mutation p.S1801L 0.15 probably_damaging(0.939) TCGA-CV-7406-01 5 73931590 73931590 G C ENC1 Missense_Mutation p.L241V 0.24 deleterious(0.04) probably_damaging(0.945) TCGA-CV-7406-01 5 74032528 74032528 C T GFM2 Intron 0.14 TCGA-CV-7406-01 5 79855801 79855801 G T ANKRD34B Missense_Mutation p.S13Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7406-01 5 82491695 82491695 A C XRCC4 Missense_Mutation p.N141T 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-CV-7406-01 5 89943367 89943367 C T GPR98 Silent p.L1025L 0.33 TCGA-CV-7406-01 5 94876457 94876457 C T TTC37 Nonsense_Mutation p.W160* 0.29 TCGA-CV-7406-01 6 105224986 105224986 C G HACE1 Splice_Site p.X560_splice 0.38 TCGA-CV-7406-01 6 112438963 112438963 C G LAMA4 Missense_Mutation p.E1654Q 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7406-01 6 159129394 159129394 G A SYTL3 Missense_Mutation p.E163K 0.27 tolerated(0.11) benign(0.057) TCGA-CV-7406-01 6 27419348 27419348 G A ZNF184 Missense_Mutation p.H664Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-CV-7406-01 6 27419878 27419878 G A ZNF184 Missense_Mutation p.S487L 0.29 tolerated(0.11) probably_damaging(0.997) TCGA-CV-7406-01 6 2838863 2838863 C T SERPINB1 Missense_Mutation p.D76N 0.24 tolerated(0.07) benign(0.028) TCGA-CV-7406-01 6 30521243 30521243 G A GNL1 Missense_Mutation p.P231L 0.26 deleterious(0) probably_damaging(0.957) TCGA-CV-7406-01 6 31846715 31846715 C T SLC44A4 Intron 0.27 TCGA-CV-7406-01 6 34507128 34507128 G A SPDEF Missense_Mutation p.S243L 0.24 tolerated(0.05) benign(0.441) TCGA-CV-7406-01 6 4087790 4087790 C G C6orf201 5'UTR 0.31 TCGA-CV-7406-01 6 71190648 71190648 C T FAM135A Missense_Mutation p.P196L 0.25 tolerated(0.09) probably_damaging(0.955) TCGA-CV-7406-01 7 103294652 103294652 C G RELN Missense_Mutation p.G481A 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-CV-7406-01 7 112412901 112412901 C G TMEM168 Missense_Mutation p.R494T 0.28 deleterious(0) probably_damaging(0.996) TCGA-CV-7406-01 7 121944204 121944204 C T FEZF1 Silent p.R96R 0.41 TCGA-CV-7406-01 7 121944205 121944205 C T FEZF1 Missense_Mutation p.R96Q 0.39 tolerated(0.35) probably_damaging(0.984) TCGA-CV-7406-01 7 128483349 128483349 G A FLNC Missense_Mutation p.E873K 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-CV-7406-01 7 128490905 128490907 ACA - FLNC In_Frame_Del p.N1817del 0.35 TCGA-CV-7406-01 7 130417929 130417929 G A KLF14 Missense_Mutation p.S311F 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.831) TCGA-CV-7406-01 7 143090949 143090949 C G EPHA1 Missense_Mutation p.K837N 0.36 deleterious(0.02) possibly_damaging(0.889) TCGA-CV-7406-01 7 38398224 38398224 G C TRGV3 Silent p.L81L 0.25 TCGA-CV-7406-01 7 40900094 40900094 C A SUGCT 3'UTR 0.19 TCGA-CV-7406-01 7 43483921 43483921 G A HECW1 Missense_Mutation p.A384T 0.36 tolerated_low_confidence(0.42) benign(0.002) TCGA-CV-7406-01 7 45753517 45753517 G A ADCY1 Missense_Mutation p.V1095I 0.26 tolerated_low_confidence(0.24) benign(0.008) TCGA-CV-7406-01 7 51096125 51096125 C T COBL Missense_Mutation p.G890S 0.21 tolerated(0.71) benign(0.007) TCGA-CV-7406-01 7 57529035 57529035 C T ZNF716 Missense_Mutation p.H290Y 0.33 deleterious(0.03) probably_damaging(0.972) TCGA-CV-7406-01 7 65425848 65425848 G A GUSB 3'UTR 0.28 TCGA-CV-7406-01 7 81374353 81374353 G A HGF Missense_Mutation p.H237Y 0.28 tolerated(0.14) benign(0.352) TCGA-CV-7406-01 7 92131331 92131331 C G PEX1 Missense_Mutation p.K763N 0.25 tolerated(0.27) benign(0.001) TCGA-CV-7406-01 7 99704400 99704400 C G AP4M1 Silent p.L419L 0.14 TCGA-CV-7406-01 8 113569178 113569178 C T CSMD3 Missense_Mutation p.E1350K 0.21 tolerated(0.12) possibly_damaging(0.799) TCGA-CV-7406-01 8 121354670 121354670 G A COL14A1 Missense_Mutation p.E1625K 0.31 deleterious(0) possibly_damaging(0.466) TCGA-CV-7406-01 8 130774940 130774940 T G GSDMC Missense_Mutation p.K203T 0.30 tolerated(0.19) benign(0.364) TCGA-CV-7406-01 8 130774941 130774941 T C GSDMC Missense_Mutation p.K203E 0.30 tolerated(0.09) possibly_damaging(0.783) TCGA-CV-7406-01 8 143695106 143695106 G A ARC Missense_Mutation p.P176L 0.56 deleterious_low_confidence(0) benign(0.168) TCGA-CV-7406-01 8 145154328 145154328 G A SHARPIN Silent p.F258F 0.22 TCGA-CV-7406-01 8 145692461 145692461 G A KIFC2 Missense_Mutation p.E100K 0.46 tolerated_low_confidence(0.08) possibly_damaging(0.725) TCGA-CV-7406-01 8 1905058 1905067 GCACTTCCGA - ARHGEF10 Frame_Shift_Del p.A1222Vfs*8 0.20 TCGA-CV-7406-01 8 51621528 51621528 C T SNTG1 Missense_Mutation p.A425V 0.28 tolerated(0.29) benign(0.05) TCGA-CV-7406-01 8 6366342 6366342 G A ANGPT2 Intron 0.34 TCGA-CV-7406-01 8 67066571 67066571 T G TRIM55 Splice_Site p.X508_splice 0.24 TCGA-CV-7406-01 8 71039096 71039096 G A NCOA2 Missense_Mutation p.R1290W 0.14 deleterious(0.02) probably_damaging(1) TCGA-CV-7406-01 8 88363940 88363940 C G CNBD1 Missense_Mutation p.S357C 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7406-01 9 130914289 130914289 A C LCN2 Missense_Mutation p.K154Q 0.24 tolerated(0.08) benign(0.184) TCGA-CV-7406-01 9 36169709 36169709 C T CCIN Silent p.I70I 0.24 TCGA-CV-7406-01 9 79229467 79229467 C T PRUNE2 3'UTR 0.25 TCGA-CV-7406-01 9 79936594 79936594 G A VPS13A Missense_Mutation p.R1921Q 0.25 tolerated(0.29) benign(0.018) TCGA-CV-7406-01 9 86912933 86912933 A C SLC28A3 Missense_Mutation p.V224G 0.11 deleterious(0) probably_damaging(0.991) TCGA-CV-7406-01 X 100290613 100290613 G C TRMT2B Missense_Mutation p.Q200E 0.43 tolerated(0.08) benign(0.075) TCGA-CV-7406-01 X 101971015 101971015 C G GPRASP2 Missense_Mutation p.I406M 0.07 tolerated(0.07) benign(0.27) TCGA-CV-7406-01 X 129205093 129205093 G C ELF4 Missense_Mutation p.S244C 0.61 deleterious(0) probably_damaging(0.999) TCGA-CV-7406-01 X 130220635 130220635 T A ARHGAP36 Missense_Mutation p.D494E 0.17 deleterious(0.01) benign(0.003) TCGA-CV-7406-01 X 132440099 132440099 C T GPC4 Missense_Mutation p.D321N 0.53 deleterious(0) probably_damaging(0.992) TCGA-CV-7406-01 X 132795857 132795857 C T GPC3 Silent p.R461R 0.39 TCGA-CV-7406-01 X 141291674 141291674 C T MAGEC2 Missense_Mutation p.E34K 0.54 tolerated(0.09) possibly_damaging(0.636) TCGA-CV-7406-01 X 153215717 153215717 G A HCFC1 Missense_Mutation p.A1994V 0.69 deleterious(0) possibly_damaging(0.874) TCGA-CV-7406-01 X 16775366 16775366 G A SYAP1 Missense_Mutation p.D289N 0.59 deleterious(0.03) possibly_damaging(0.884) TCGA-CV-7406-01 X 21670685 21670685 C A CNKSR2 3'UTR 0.47 TCGA-CV-7406-01 X 30873379 30873379 G A TAB3 Missense_Mutation p.P135S 0.64 tolerated(0.12) benign(0.018) TCGA-CV-7406-01 X 48650432 48650432 G A GATA1 Silent p.E134E 0.52 TCGA-CV-7406-01 X 48826593 48826593 G A KCND1 Missense_Mutation p.P29L 0.27 tolerated(0.4) benign(0.004) TCGA-CV-7406-01 X 53560990 53560990 G A HUWE1 Missense_Mutation p.R4334C 0.57 unknown(0) TCGA-CV-7406-01 X 78616833 78616833 G A ITM2A Silent p.L232L 0.56 TCGA-CV-7407-01 10 115365978 115365978 C T NRAP Missense_Mutation p.E1256K 0.43 deleterious(0) possibly_damaging(0.86) TCGA-CV-7407-01 10 20335831 20335831 A G PLXDC2 Missense_Mutation p.I120V 0.11 tolerated(0.35) benign(0.051) TCGA-CV-7407-01 10 25861578 25861578 G T GPR158 Missense_Mutation p.R505S 0.15 deleterious(0) probably_damaging(0.98) TCGA-CV-7407-01 10 47087866 47087866 C A NPY4R Silent p.V361V 0.17 TCGA-CV-7407-01 10 48428782 48428782 C T GDF10 Silent p.K368K 0.41 TCGA-CV-7407-01 11 107427562 107427562 G A ALKBH8 Silent p.T99T 0.13 TCGA-CV-7407-01 11 120346103 120346103 A T ARHGEF12 Missense_Mutation p.D1055V 0.10 deleterious(0) possibly_damaging(0.89) TCGA-CV-7407-01 11 18158851 18158851 G A MRGPRX3 Silent p.T34T 0.13 TCGA-CV-7407-01 11 22696395 22696395 G A GAS2 Splice_Site 0.29 TCGA-CV-7407-01 11 59575303 59575303 T G MRPL16 Missense_Mutation p.K47N 0.07 deleterious(0.05) benign(0.294) TCGA-CV-7407-01 11 60543106 60543106 G A MS4A15 Missense_Mutation p.S214N 0.22 tolerated(0.49) benign(0.125) TCGA-CV-7407-01 11 62298958 62298958 G A AHNAK Silent p.G977G 0.19 TCGA-CV-7407-01 11 64361159 64361159 T C SLC22A12 Silent p.S238S 0.23 TCGA-CV-7407-01 12 129569218 129569218 G T TMEM132D Silent p.V491V 0.18 TCGA-CV-7407-01 12 133319798 133319798 G A ANKLE2 Missense_Mutation p.S432L 0.19 tolerated(0.73) benign(0.14) TCGA-CV-7407-01 12 57396829 57396829 G A ZBTB39 Missense_Mutation p.R625W 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-7407-01 12 653525 653525 G A B4GALNT3 Silent p.L124L 0.10 TCGA-CV-7407-01 13 110408571 110408571 G T IRS2 3'UTR 0.28 TCGA-CV-7407-01 14 20295720 20295720 T C OR4N2 Missense_Mutation p.I38T 0.07 tolerated(0.86) possibly_damaging(0.611) TCGA-CV-7407-01 14 20586188 20586188 T - OR4K17 Frame_Shift_Del p.C210Vfs*12 0.10 TCGA-CV-7407-01 14 21971333 21971333 C T METTL3 Missense_Mutation p.E236K 0.25 deleterious(0) probably_damaging(0.946) TCGA-CV-7407-01 14 59950999 59950999 C T L3HYPDH Silent p.P12P 0.10 TCGA-CV-7407-01 14 60212930 60212930 T C RTN1 Missense_Mutation p.T171A 0.46 tolerated(0.05) benign(0.343) TCGA-CV-7407-01 14 64486767 64486767 A G SYNE2 Missense_Mutation p.I1703V 0.16 benign(0.054) TCGA-CV-7407-01 14 89060979 89060979 G A ZC3H14 Intron 0.15 TCGA-CV-7407-01 14 93412779 93412779 G A ITPK1 Silent p.S266S 0.21 TCGA-CV-7407-01 15 40915007 40915010 GGAA - CASC5 Frame_Shift_Del p.R876Kfs*30 0.14 TCGA-CV-7407-01 15 91557634 91557634 T C VPS33B Missense_Mutation p.K90R 0.19 tolerated(0.38) benign(0.004) TCGA-CV-7407-01 16 2436242 2436242 C T ABCA17P RNA 0.18 TCGA-CV-7407-01 16 24826581 24826581 C T TNRC6A Missense_Mutation p.R1596C 0.17 deleterious(0) probably_damaging(0.964) TCGA-CV-7407-01 16 66945163 66945163 C T CDH16 Missense_Mutation p.E616K 0.14 tolerated(0.18) benign(0.012) TCGA-CV-7407-01 16 72173223 72173223 G A PMFBP1 Missense_Mutation p.P295S 0.20 tolerated(0.21) benign(0.27) TCGA-CV-7407-01 16 81142842 81142842 T C RNU6-1191P 5'Flank 0.36 TCGA-CV-7407-01 16 830539 830539 C T MSLNL Silent p.P154P 0.12 TCGA-CV-7407-01 16 84520288 84520288 C A TLDC1 Missense_Mutation p.V303L 0.08 deleterious(0.03) benign(0.261) TCGA-CV-7407-01 17 10296168 10296168 T C MYH8 Missense_Mutation p.I1815V 0.13 tolerated(0.46) benign(0.37) TCGA-CV-7407-01 17 15971267 15971267 C T NCOR1 Missense_Mutation p.R1561Q 0.17 probably_damaging(0.99) TCGA-CV-7407-01 17 16342356 16342356 C G TRPV2 3'Flank 0.19 TCGA-CV-7407-01 17 32483504 32483504 G A ASIC2 Silent p.S16S 0.35 TCGA-CV-7407-01 17 34185484 34185484 C T C17orf66 Missense_Mutation p.V329I 0.10 tolerated(0.33) benign(0.098) TCGA-CV-7407-01 17 35600372 35600372 G T ACACA Missense_Mutation p.P949H 0.13 tolerated(0.11) probably_damaging(0.969) TCGA-CV-7407-01 17 64876725 64876725 T G CACNG5 Missense_Mutation p.F112C 0.21 deleterious(0) probably_damaging(0.951) TCGA-CV-7407-01 17 7577543 7577543 C T TP53 Missense_Mutation p.M246I 0.18 deleterious(0) possibly_damaging(0.811) TCGA-CV-7407-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.19 tolerated(0.11) benign(0.308) TCGA-CV-7407-01 17 8197904 8197904 G A SLC25A35 Silent p.F74F 0.21 TCGA-CV-7407-01 18 14542833 14542833 A C POTEC Missense_Mutation p.C105G 0.07 tolerated_low_confidence(0.13) benign(0.077) TCGA-CV-7407-01 18 54815012 54815012 C T BOD1L2 Missense_Mutation p.P157S 0.41 tolerated(0.2) benign(0.079) TCGA-CV-7407-01 18 55143819 55143819 C T ONECUT2 Missense_Mutation p.S460F 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-7407-01 19 19681616 19681616 C T PBX4 Missense_Mutation p.E74K 0.09 deleterious(0.01) benign(0.26) TCGA-CV-7407-01 19 37677052 37677052 C T ZNF585B Missense_Mutation p.E463K 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7407-01 19 37726884 37726884 T G ZNF383 Missense_Mutation p.L47R 0.05 tolerated(0.05) benign(0.245) TCGA-CV-7407-01 19 49714926 49714926 A G TRPM4 3'UTR 0.12 TCGA-CV-7407-01 19 49933917 49933917 G A SLC17A7 Silent p.D514D 0.20 TCGA-CV-7407-01 19 8618065 8618065 G A MYO1F Silent p.F154F 0.10 TCGA-CV-7407-01 1 108292084 108292085 - T VAV3 Frame_Shift_Ins p.W465Vfs*34 0.15 TCGA-CV-7407-01 1 151373789 151373789 C A PSMB4 Nonsense_Mutation p.C217* 0.14 TCGA-CV-7407-01 1 152856943 152856943 C T SMCP Silent p.G15G 0.24 TCGA-CV-7407-01 1 156756890 156756890 C T PRCC Missense_Mutation p.P336L 0.32 tolerated(0.09) benign(0.218) TCGA-CV-7407-01 1 158152716 158152716 G A CD1D Missense_Mutation p.R219H 0.11 tolerated(0.47) benign(0.014) TCGA-CV-7407-01 1 16059015 16059015 C G PLEKHM2 Nonsense_Mutation p.Y932* 0.41 TCGA-CV-7407-01 1 161018149 161018149 C A ARHGAP30 Missense_Mutation p.V888L 0.31 deleterious_low_confidence(0.01) benign(0.003) TCGA-CV-7407-01 1 166818317 166818317 G A POGK Silent p.G167G 0.14 TCGA-CV-7407-01 1 169511310 169511310 A C F5 Missense_Mutation p.H1006Q 0.07 tolerated(0.12) benign(0.027) TCGA-CV-7407-01 1 171249964 171249964 C T FMO1 Nonsense_Mutation p.R223* 0.05 TCGA-CV-7407-01 1 186281853 186281853 T C TPR 3'UTR 0.09 TCGA-CV-7407-01 1 205888028 205888028 G A SLC26A9 Silent p.D732D 0.17 TCGA-CV-7407-01 1 210415025 210415025 G C SERTAD4 Missense_Mutation p.R138S 0.13 deleterious(0) probably_damaging(0.998) TCGA-CV-7407-01 1 213181634 213181634 T C ANGEL2 Missense_Mutation p.Y187C 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7407-01 1 232600688 232600688 T C SIPA1L2 Silent p.G906G 0.50 TCGA-CV-7407-01 1 243809217 243809217 G C AKT3 Missense_Mutation p.S136C 0.11 deleterious(0.02) benign(0.013) TCGA-CV-7407-01 1 67896016 67896016 T C SERBP1 5'UTR 0.51 TCGA-CV-7407-01 1 86361734 86361734 A G COL24A1 Silent p.D949D 0.25 TCGA-CV-7407-01 1 90400516 90400516 G C LRRC8D Missense_Mutation p.S630T 0.08 tolerated(0.22) benign(0.015) TCGA-CV-7407-01 20 25477346 25477346 C T NINL Missense_Mutation p.M421I 0.14 deleterious(0.01) benign(0.053) TCGA-CV-7407-01 21 39947591 39947591 T C ERG Missense_Mutation p.I12V 0.08 tolerated(0.27) benign(0.001) TCGA-CV-7407-01 21 41496129 41496129 T C DSCAM Missense_Mutation p.Y1230C 0.10 tolerated(0.16) possibly_damaging(0.886) TCGA-CV-7407-01 21 41711195 41711195 T C DSCAM Missense_Mutation p.H453R 0.07 tolerated(0.16) benign(0.445) TCGA-CV-7407-01 21 45730967 45730967 G T PFKL Splice_Site p.X79_splice 0.20 TCGA-CV-7407-01 22 32011159 32011159 C G SFI1 Nonsense_Mutation p.S1065* 0.16 TCGA-CV-7407-01 22 32650129 32650129 C T SLC5A4 Silent p.P69P 0.47 TCGA-CV-7407-01 2 103068292 103068292 A G IL18RAP Missense_Mutation p.N484S 0.13 tolerated(0.48) benign(0.016) TCGA-CV-7407-01 2 136566291 136566291 T G LCT Missense_Mutation p.Y1209S 0.30 deleterious(0) probably_damaging(0.981) TCGA-CV-7407-01 2 141533735 141533735 G T LRP1B Missense_Mutation p.P1811H 0.30 possibly_damaging(0.893) TCGA-CV-7407-01 2 153471451 153471451 A G FMNL2 Silent p.E383E 0.23 TCGA-CV-7407-01 2 160204060 160204060 C G BAZ2B Missense_Mutation p.L1797F 0.05 possibly_damaging(0.67) TCGA-CV-7407-01 2 1653341 1653341 G A PXDN Silent p.F737F 0.21 TCGA-CV-7407-01 2 165557131 165557131 G C COBLL1 Missense_Mutation p.T493R 0.12 deleterious(0) possibly_damaging(0.786) TCGA-CV-7407-01 2 1664729 1664729 T C PXDN Silent p.A587A 0.21 TCGA-CV-7407-01 2 179433970 179433970 C T TTN Missense_Mutation p.G25630E 0.04 TCGA-CV-7407-01 2 179457754 179457754 C T TTN Missense_Mutation p.D19698N 0.03 TCGA-CV-7407-01 2 183616441 183616441 G A DNAJC10 Missense_Mutation p.V455I 0.06 tolerated(0.06) possibly_damaging(0.732) TCGA-CV-7407-01 2 183845983 183845983 C G NCKAP1 Missense_Mutation p.E450Q 0.04 tolerated(0.56) possibly_damaging(0.73) TCGA-CV-7407-01 2 183866755 183866755 G C NCKAP1 Missense_Mutation p.R183G 0.05 deleterious(0) probably_damaging(0.998) TCGA-CV-7407-01 2 21231328 21231328 G A APOB Silent p.L2804L 0.21 TCGA-CV-7407-01 2 219507041 219507041 G C ZNF142 Missense_Mutation p.L1400V 0.27 tolerated(0.28) possibly_damaging(0.694) TCGA-CV-7407-01 2 220494312 220494312 G A SLC4A3 Missense_Mutation p.G169E 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.884) TCGA-CV-7407-01 2 242401976 242401976 G A FARP2 Silent p.E542E 0.17 TCGA-CV-7407-01 2 27850176 27850176 A G CCDC121 Missense_Mutation p.L326P 0.21 tolerated(0.1) benign(0.301) TCGA-CV-7407-01 2 70408542 70408542 T C C2orf42 Silent p.K192K 0.12 TCGA-CV-7407-01 2 71653593 71653596 CCAT - ZNF638 Frame_Shift_Del p.P1532Yfs*16 0.09 TCGA-CV-7407-01 2 99720536 99720536 T C TSGA10 Missense_Mutation p.K169E 0.30 deleterious(0.02) possibly_damaging(0.677) TCGA-CV-7407-01 3 147128517 147128517 G A ZIC1 Silent p.A206A 0.22 TCGA-CV-7407-01 3 164741544 164741544 T A SI Silent p.A971A 0.16 TCGA-CV-7407-01 3 197423824 197423845 CCATATTCCATGTACAGAGAGC - KIAA0226 Splice_Site p.X446_splice 0.25 TCGA-CV-7407-01 3 49462293 49462293 A - NICN1 Frame_Shift_Del p.Y205* 0.36 TCGA-CV-7407-01 3 52860947 52860947 G A ITIH4 Nonsense_Mutation p.Q127* 0.18 TCGA-CV-7407-01 4 10444982 10444982 G A ZNF518B Missense_Mutation p.R991C 0.24 deleterious(0) probably_damaging(0.997) TCGA-CV-7407-01 4 185340660 185340660 T C IRF2 Silent p.K50K 0.11 TCGA-CV-7407-01 5 108233448 108233448 G C FER Missense_Mutation p.A379P 0.15 deleterious(0.02) possibly_damaging(0.827) TCGA-CV-7407-01 5 140167440 140167440 C T PCDHA1 Missense_Mutation p.P522L 0.52 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-CV-7407-01 5 169508940 169508940 C A DOCK2 Missense_Mutation p.D1794E 0.11 deleterious_low_confidence(0) benign(0.018) TCGA-CV-7407-01 5 170668104 170668104 T G RANBP17 Silent p.A865A 0.23 TCGA-CV-7407-01 5 176939861 176939861 T C DDX41 Missense_Mutation p.E440G 0.14 deleterious(0) benign(0.336) TCGA-CV-7407-01 5 38950400 38950400 T G RICTOR Missense_Mutation p.K1184Q 0.17 tolerated(0.27) benign(0.143) TCGA-CV-7407-01 5 7695903 7695903 C A ADCY2 Missense_Mutation p.A303E 0.48 deleterious(0) probably_damaging(0.945) TCGA-CV-7407-01 5 9224908 9224908 G C SEMA5A Missense_Mutation p.A175G 0.42 tolerated(0.09) benign(0.209) TCGA-CV-7407-01 6 152651117 152651117 C T SYNE1 Silent p.R4901R 0.27 TCGA-CV-7407-01 6 26107762 26107762 G A HIST1H1T Missense_Mutation p.A187V 0.17 tolerated(0.2) benign(0.098) TCGA-CV-7407-01 6 27833180 27833180 G A HIST1H2AL Silent p.K16K 0.11 TCGA-CV-7407-01 6 28268549 28268549 G A PGBD1 Silent p.R306R 0.07 TCGA-CV-7407-01 6 35919038 35919038 C T SLC26A8 Missense_Mutation p.V792M 0.19 deleterious(0.01) benign(0.149) TCGA-CV-7407-01 6 44253954 44253954 G A TCTE1 Missense_Mutation p.P198L 0.15 tolerated(0.06) possibly_damaging(0.521) TCGA-CV-7407-01 6 90482425 90482425 G A MDN1 Silent p.F650F 0.16 TCGA-CV-7407-01 6 97246956 97246956 G A GPR63 Missense_Mutation p.P218S 0.17 tolerated(0.49) possibly_damaging(0.475) TCGA-CV-7407-01 7 101559503 101559503 G T CUX1 Nonsense_Mutation p.E58* 0.11 TCGA-CV-7407-01 7 102523890 102523890 G C FBXL13 Missense_Mutation p.S417C 0.25 tolerated(0.49) benign(0.023) TCGA-CV-7407-01 7 115580975 115580975 A C TFEC Missense_Mutation p.I225S 0.12 deleterious(0) possibly_damaging(0.794) TCGA-CV-7407-01 7 121943895 121943895 G A FEZF1 Silent p.A199A 0.09 TCGA-CV-7407-01 7 126882949 126882949 C G GRM8 Missense_Mutation p.D104H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-7407-01 7 126883115 126883115 C T GRM8 Silent p.L48L 0.14 TCGA-CV-7407-01 7 142099704 142099704 T C TRBV7-8 Missense_Mutation p.K33R 0.23 tolerated(0.18) benign(0.033) TCGA-CV-7407-01 7 57528634 57528634 C T ZNF716 Missense_Mutation p.T156I 0.38 tolerated(1) benign(0) TCGA-CV-7407-01 7 86509768 86509768 A T KIAA1324L 3'UTR 0.24 TCGA-CV-7407-01 7 88963965 88963965 A C ZNF804B Missense_Mutation p.S557R 0.11 tolerated(0.42) benign(0.002) TCGA-CV-7407-01 7 98580905 98580905 G A TRRAP Missense_Mutation p.E2942K 0.24 probably_damaging(1) TCGA-CV-7407-01 8 27146779 27146779 C A TRIM35 Missense_Mutation p.E268D 0.16 tolerated(0.08) possibly_damaging(0.724) TCGA-CV-7407-01 8 614671 614671 C T ERICH1 Missense_Mutation p.A422T 0.08 deleterious(0.02) benign(0.175) TCGA-CV-7407-01 8 72211931 72211931 C T EYA1 Missense_Mutation p.G194E 0.39 deleterious(0) probably_damaging(0.986) TCGA-CV-7407-01 8 77764068 77764068 C T ZFHX4 Silent p.S1637S 0.08 TCGA-CV-7407-01 9 131670584 131670584 C G LRRC8A Missense_Mutation p.Q381E 0.08 deleterious(0.04) possibly_damaging(0.9) TCGA-CV-7407-01 9 14842546 14842546 G A FREM1 Silent p.G502G 0.04 TCGA-CV-7407-01 9 8507393 8507393 C G PTPRD Missense_Mutation p.E529Q 0.03 tolerated(0.12) probably_damaging(0.997) TCGA-CV-7407-01 9 86495230 86495230 C T KIF27 Silent p.R875R 0.05 TCGA-CV-7407-01 9 91953402 91953402 A T SECISBP2 Missense_Mutation p.E373D 0.10 tolerated(0.06) benign(0.105) TCGA-CV-7407-01 9 97897696 97897696 C A FANCC Nonsense_Mutation p.E259* 0.16 TCGA-CV-7407-01 X 102508843 102508843 C T TCEAL8 Missense_Mutation p.R22H 0.06 tolerated(0.91) benign(0.002) TCGA-CV-7407-01 X 102842317 102842317 C T TCEAL4 3'UTR 0.21 TCGA-CV-7407-01 X 119509241 119509241 C G ATP1B4 Missense_Mutation p.L193V 0.11 tolerated(1) benign(0.012) TCGA-CV-7407-01 X 135431431 135431431 C G GPR112 Missense_Mutation p.P1856A 0.15 tolerated(1) benign(0.066) TCGA-CV-7407-01 X 138680607 138680607 G C MCF2 Silent p.L705L 0.14 TCGA-CV-7407-01 X 145082598 145082598 C T MIR891B RNA 0.10 TCGA-CV-7407-01 X 18660205 18660205 G A RS1 Silent p.F198F 0.19 TCGA-CV-7407-01 X 21896226 21896226 C A MBTPS2 Missense_Mutation p.S346Y 0.14 tolerated(0.36) benign(0.403) TCGA-CV-7407-01 X 48564702 48564702 G A SUV39H1 Missense_Mutation p.R292H 0.08 tolerated(0.14) benign(0.013) TCGA-CV-7407-01 X 69496004 69496004 A T ARR3 Missense_Mutation p.K73I 0.19 deleterious(0) probably_damaging(0.932) TCGA-CV-7410-01 10 101559038 101559038 G A ABCC2 Silent p.L314L 0.03 TCGA-CV-7410-01 10 13481367 13481367 G C BEND7 Silent p.L404L 0.10 TCGA-CV-7410-01 11 55587255 55587255 C G OR5D18 Missense_Mutation p.I50M 0.10 deleterious(0.01) probably_damaging(0.933) TCGA-CV-7410-01 11 68703725 68703725 G A IGHMBP2 Missense_Mutation p.E593K 0.07 deleterious(0) probably_damaging(0.997) TCGA-CV-7410-01 12 50869453 50869453 G T LARP4 Missense_Mutation p.V661F 0.06 tolerated(0.16) benign(0.004) TCGA-CV-7410-01 12 66641854 66641854 C G IRAK3 Nonsense_Mutation p.S565* 0.10 TCGA-CV-7410-01 13 109535433 109535433 A T MYO16 Silent p.S462S 0.06 TCGA-CV-7410-01 13 67801363 67801363 C T PCDH9 Missense_Mutation p.E404K 0.06 tolerated(0.18) possibly_damaging(0.777) TCGA-CV-7410-01 13 79175606 79175606 A C POU4F1 Missense_Mutation p.W402G 0.06 deleterious(0) unknown(0) TCGA-CV-7410-01 15 77407181 77407181 C G PEAK1 Missense_Mutation p.E1520Q 0.11 deleterious(0) probably_damaging(1) TCGA-CV-7410-01 15 91030272 91030272 G A IQGAP1 Missense_Mutation p.V1371M 0.10 tolerated(0.07) benign(0.068) TCGA-CV-7410-01 16 17211720 17211720 C T XYLT1 Silent p.V780V 0.06 TCGA-CV-7410-01 16 70595670 70595670 C G SF3B3 Missense_Mutation p.I757M 0.09 deleterious(0) probably_damaging(0.973) TCGA-CV-7410-01 17 2233651 2233651 C G TSR1 Intron 0.11 TCGA-CV-7410-01 17 72914069 72914069 G A USH1G 3'UTR 0.33 TCGA-CV-7410-01 17 78263580 78263580 G A RNF213 Silent p.V352V 0.11 TCGA-CV-7410-01 17 9684831 9684831 C G DHRS7C Missense_Mutation p.D79H 0.11 deleterious(0.01) probably_damaging(0.961) TCGA-CV-7410-01 19 22605109 22605109 G T ZNF98 5'UTR 0.10 TCGA-CV-7410-01 19 30935293 30935293 G A ZNF536 Missense_Mutation p.R275H 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-7410-01 1 158646059 158646059 C T SPTA1 Silent p.E328E 0.04 TCGA-CV-7410-01 1 16257698 16257698 G C SPEN Missense_Mutation p.E1655Q 0.04 probably_damaging(0.993) TCGA-CV-7410-01 1 2538485 2538485 G C MMEL1 Missense_Mutation p.Q187E 0.09 tolerated(0.66) benign(0.02) TCGA-CV-7410-01 1 38484759 38484759 A T UTP11L Missense_Mutation p.H124L 0.06 deleterious(0) probably_damaging(0.972) TCGA-CV-7410-01 1 85029046 85029046 G T CTBS Missense_Mutation p.A284D 0.10 deleterious(0) possibly_damaging(0.77) TCGA-CV-7410-01 2 179635016 179635016 C G TTN Silent p.V2804V 0.06 TCGA-CV-7410-01 2 179638098 179638098 T C TTN Splice_Site p.X2532_splice 0.13 TCGA-CV-7410-01 2 234975872 234975872 C T SPP2 Silent p.L168L 0.06 TCGA-CV-7410-01 3 127335797 127335797 G A MCM2 Missense_Mutation p.E537K 0.07 deleterious(0) probably_damaging(0.98) TCGA-CV-7410-01 3 131197966 131197966 C T MRPL3 Intron 0.11 TCGA-CV-7410-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.09 deleterious(0.02) probably_damaging(0.959) TCGA-CV-7410-01 3 49412905 49412905 C G RHOA Missense_Mutation p.E40Q 0.09 deleterious(0.04) possibly_damaging(0.534) TCGA-CV-7410-01 4 185593362 185593362 G C PRIMPOL Missense_Mutation p.D198H 0.06 benign(0.001) TCGA-CV-7410-01 4 71255552 71255552 C A SMR3B Missense_Mutation p.P76H 0.09 unknown(0) TCGA-CV-7410-01 5 138856034 138856034 C T TMEM173 Missense_Mutation p.A318T 0.16 tolerated(0.39) benign(0.015) TCGA-CV-7410-01 5 140559562 140559562 C T PCDHB8 Silent p.G649G 0.07 TCGA-CV-7410-01 6 100868694 100868694 G A SIM1 Missense_Mutation p.S380L 0.08 deleterious(0.03) benign(0.192) TCGA-CV-7410-01 6 109481812 109481812 G T CEP57L1 Nonsense_Mutation p.E352* 0.11 TCGA-CV-7410-01 6 159457885 159457885 G A TAGAP Silent p.S390S 0.07 TCGA-CV-7410-01 6 31598918 31598918 G A PRRC2A Missense_Mutation p.S823N 0.10 benign(0.213) TCGA-CV-7410-01 6 36175192 36175192 C T BRPF3 Missense_Mutation p.R570W 0.16 deleterious(0) probably_damaging(1) TCGA-CV-7410-01 6 70637839 70637839 T C COL19A1 Missense_Mutation p.V102A 0.13 deleterious(0.01) unknown(0) TCGA-CV-7410-01 7 143140947 143140947 G A TAS2R60 Silent p.K134K 0.06 TCGA-CV-7410-01 7 31683457 31683457 G A CCDC129 Missense_Mutation p.E851K 0.09 tolerated(0.46) benign(0.076) TCGA-CV-7410-01 7 50611665 50611665 G A DDC Missense_Mutation p.P40L 0.05 deleterious(0.05) benign(0.373) TCGA-CV-7410-01 7 82997162 82997162 T A SEMA3E Missense_Mutation p.R690W 0.07 deleterious(0.02) benign(0.158) TCGA-CV-7410-01 8 42586940 42586940 C T CHRNB3 Nonsense_Mutation p.R164* 0.09 TCGA-CV-7410-01 8 94746334 94746335 - TG RBM12B Frame_Shift_Ins p.E769Qfs*119 0.14 TCGA-CV-7410-01 9 117014887 117014887 G A COL27A1 Missense_Mutation p.M1016I 0.09 unknown(0) TCGA-CV-7410-01 9 15920328 15920328 G A CCDC171 Missense_Mutation p.E1221K 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-CV-7410-01 X 138699732 138699732 C A MCF2 Missense_Mutation p.E373D 0.07 tolerated(0.07) probably_damaging(0.992) TCGA-CV-7410-01 X 138869398 138869398 C A ATP11C Missense_Mutation p.G512V 0.09 deleterious(0) probably_damaging(0.984) TCGA-CV-7410-01 X 3241208 3241208 C A MXRA5 Nonsense_Mutation p.E840* 0.09 TCGA-CV-7411-01 10 104164418 104164418 G A PSD Silent p.P874P 0.27 TCGA-CV-7411-01 10 30316132 30316132 G C KIAA1462 Nonsense_Mutation p.S982* 0.24 TCGA-CV-7411-01 10 30316271 30316271 G A KIAA1462 Missense_Mutation p.R936C 0.21 deleterious(0.03) possibly_damaging(0.784) TCGA-CV-7411-01 10 50952744 50952744 C T OGDHL Missense_Mutation p.D562N 0.28 tolerated(0.07) benign(0.058) TCGA-CV-7411-01 10 61834987 61834987 G T ANK3 Silent p.P1884P 0.12 TCGA-CV-7411-01 10 89474820 89474820 G A PAPSS2 Missense_Mutation p.E240K 0.36 deleterious(0.02) benign(0.018) TCGA-CV-7411-01 11 105797542 105797542 C A GRIA4 Missense_Mutation p.N641K 0.17 deleterious(0.01) possibly_damaging(0.828) TCGA-CV-7411-01 11 117152363 117152363 G A RNF214 Silent p.L428L 0.16 TCGA-CV-7411-01 11 118948900 118948900 C A VPS11 Missense_Mutation p.F592L 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-7411-01 11 121000377 121000377 T C TECTA Missense_Mutation p.F800L 0.26 tolerated(0.55) benign(0.004) TCGA-CV-7411-01 11 193783 193783 G A SCGB1C1 Missense_Mutation p.E43K 0.09 tolerated(0.06) possibly_damaging(0.689) TCGA-CV-7411-01 11 26558965 26558966 TT - ANO3 Frame_Shift_Del p.L330Hfs*14 0.15 TCGA-CV-7411-01 11 30033675 30033675 C G KCNA4 Missense_Mutation p.G184A 0.17 deleterious(0) probably_damaging(0.994) TCGA-CV-7411-01 11 65685181 65685181 G A C11orf68 Missense_Mutation p.R211C 0.21 deleterious(0) possibly_damaging(0.836) TCGA-CV-7411-01 11 73689424 73689424 G C UCP2 5'UTR 0.22 TCGA-CV-7411-01 12 103795437 103795437 A C C12orf42 Missense_Mutation p.I32S 0.24 deleterious(0) probably_damaging(0.934) TCGA-CV-7411-01 12 109845600 109845600 T C MYO1H Missense_Mutation p.V330A 0.21 deleterious(0) probably_damaging(0.998) TCGA-CV-7411-01 12 120588998 120588998 C A GCN1L1 Silent p.A1420A 0.14 TCGA-CV-7411-01 12 13715902 13715902 G A GRIN2B Missense_Mutation p.L1424F 0.31 tolerated(0.6) benign(0.035) TCGA-CV-7411-01 12 50043581 50043581 C G FMNL3 Missense_Mutation p.E710Q 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7411-01 12 94641745 94641745 C T PLXNC1 Missense_Mutation p.R819C 0.22 tolerated(0.18) possibly_damaging(0.717) TCGA-CV-7411-01 13 24465689 24465689 C A C1QTNF9B Silent p.G247G 0.13 TCGA-CV-7411-01 13 99376168 99376168 G A SLC15A1 Silent p.H121H 0.14 TCGA-CV-7411-01 14 21788328 21788328 C G RPGRIP1 Missense_Mutation p.Q487E 0.17 tolerated(0.54) benign(0.009) TCGA-CV-7411-01 14 94847230 94847230 A C SERPINA1 Missense_Mutation p.F299V 0.11 tolerated(0.17) benign(0.044) TCGA-CV-7411-01 14 95658065 95658065 C T CLMN Missense_Mutation p.A949T 0.20 tolerated(0.06) benign(0.043) TCGA-CV-7411-01 15 22861874 22861874 G A TUBGCP5 Missense_Mutation p.A632T 0.14 tolerated(0.24) possibly_damaging(0.507) TCGA-CV-7411-01 15 34115205 34115205 A G RYR3 Silent p.L3668L 0.12 TCGA-CV-7411-01 15 49052415 49052415 G A CEP152 Missense_Mutation p.P871S 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7411-01 15 59350644 59350644 C T RNF111 Nonsense_Mutation p.Q421* 0.08 TCGA-CV-7411-01 15 65693167 65693167 G A IGDCC4 Missense_Mutation p.P273L 0.06 deleterious(0) probably_damaging(1) TCGA-CV-7411-01 15 93547934 93547934 A T CHD2 Missense_Mutation p.I1456F 0.14 deleterious(0.05) probably_damaging(0.996) TCGA-CV-7411-01 15 93595681 93595681 C A RGMA Missense_Mutation p.G71C 0.17 tolerated(0.12) probably_damaging(0.927) TCGA-CV-7411-01 16 24829935 24829935 C T TNRC6A Missense_Mutation p.T1665I 0.09 deleterious(0) probably_damaging(0.996) TCGA-CV-7411-01 16 28906272 28906272 T C ATP2A1 Missense_Mutation p.S473P 0.15 tolerated(0.05) benign(0.237) TCGA-CV-7411-01 16 57762377 57762377 C A CCDC135 Missense_Mutation p.L758I 0.15 tolerated(0.47) benign(0.127) TCGA-CV-7411-01 16 72139499 72139499 C A DHX38 Silent p.I821I 0.14 TCGA-CV-7411-01 16 731765 731765 C T JMJD8 3'UTR 0.18 TCGA-CV-7411-01 16 731939 731939 C T JMJD8 3'UTR 0.16 TCGA-CV-7411-01 16 82033306 82033306 G T SDR42E1 Missense_Mutation p.P198T 0.16 deleterious(0) probably_damaging(1) TCGA-CV-7411-01 17 14110536 14110536 C T COX10 3'UTR 0.27 TCGA-CV-7411-01 17 21094308 21094308 C G DHRS7B Missense_Mutation p.Q274E 0.14 tolerated(0.75) benign(0.066) TCGA-CV-7411-01 17 29683523 29683523 C T NF1 Missense_Mutation p.P2554L 0.15 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-CV-7411-01 17 35631097 35631097 T A ACACA Missense_Mutation p.D332V 0.19 deleterious(0.01) benign(0.156) TCGA-CV-7411-01 17 3802281 3802281 G C P2RX1 Missense_Mutation p.R305G 0.20 deleterious(0) probably_damaging(0.981) TCGA-CV-7411-01 17 40175990 40175990 G C NKIRAS2 3'UTR 0.12 TCGA-CV-7411-01 17 40997732 40997732 A T AOC2 Silent p.V363V 0.21 TCGA-CV-7411-01 17 59477583 59477583 T A TBX2 Missense_Mutation p.F16I 0.19 deleterious(0.04) possibly_damaging(0.879) TCGA-CV-7411-01 17 60744755 60744755 G C MRC2 Missense_Mutation p.Q326H 0.13 tolerated(0.07) benign(0.261) TCGA-CV-7411-01 17 7907216 7907216 G A GUCY2D Silent p.Q256Q 0.19 TCGA-CV-7411-01 18 29052346 29052346 T - DSG3 Frame_Shift_Del p.H667Ifs*23 0.19 TCGA-CV-7411-01 18 29104786 29104786 G T DSG2 Nonsense_Mutation p.E317* 0.31 TCGA-CV-7411-01 18 3102583 3102583 G A MYOM1 Missense_Mutation p.S1155L 0.20 tolerated(0.43) probably_damaging(0.999) TCGA-CV-7411-01 18 56585503 56585503 A G ZNF532 Intron 0.25 TCGA-CV-7411-01 19 10395646 10395647 - T ICAM1 Frame_Shift_Ins p.C457Lfs*24 0.08 TCGA-CV-7411-01 19 1257108 1257108 C T MIDN Missense_Mutation p.P415L 0.12 deleterious(0) possibly_damaging(0.726) TCGA-CV-7411-01 19 15484099 15484099 C T AKAP8 Missense_Mutation p.E142K 0.15 deleterious(0) benign(0.427) TCGA-CV-7411-01 19 22379690 22379690 A T ZNF676 5'UTR 0.25 TCGA-CV-7411-01 19 22575526 22575526 T C ZNF98 Missense_Mutation p.R171G 0.19 tolerated(0.05) benign(0.283) TCGA-CV-7411-01 19 56235505 56235505 G A NLRP9 Missense_Mutation p.T667I 0.14 tolerated(0.41) benign(0.179) TCGA-CV-7411-01 19 56244753 56244753 C T NLRP9 Silent p.V148V 0.10 TCGA-CV-7411-01 19 57642147 57642147 G C USP29 Missense_Mutation p.E702Q 0.27 tolerated(0.19) probably_damaging(0.969) TCGA-CV-7411-01 19 6416646 6416646 T A KHSRP Missense_Mutation p.K448I 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-7411-01 19 6416663 6416663 T A KHSRP Splice_Site p.X443_splice 0.16 TCGA-CV-7411-01 1 109391400 109391400 G C AKNAD1 Missense_Mutation p.P407A 0.13 tolerated(0.4) possibly_damaging(0.742) TCGA-CV-7411-01 1 119427320 119427320 G C TBX15 3'UTR 0.16 TCGA-CV-7411-01 1 151377602 151377602 G C POGZ Silent p.V1303V 0.23 TCGA-CV-7411-01 1 156642028 156642028 G A NES Missense_Mutation p.T651M 0.21 deleterious(0) benign(0.115) TCGA-CV-7411-01 1 157665837 157665837 G T FCRL3 Silent p.T375T 0.16 TCGA-CV-7411-01 1 161192086 161192086 T C AL590714.1 Silent p.D7D 0.18 TCGA-CV-7411-01 1 171303659 171303659 G A FMO4 Missense_Mutation p.E313K 0.17 deleterious(0.01) possibly_damaging(0.589) TCGA-CV-7411-01 1 197111547 197111547 G A ASPM Missense_Mutation p.S612L 0.21 tolerated(0.15) benign(0.003) TCGA-CV-7411-01 1 208202360 208202360 C A PLXNA2 Silent p.V1751V 0.31 TCGA-CV-7411-01 1 237780641 237780641 C T RYR2 Missense_Mutation p.A1924V 0.21 possibly_damaging(0.869) TCGA-CV-7411-01 1 36929441 36929441 G C MRPS15 Silent p.L47L 0.15 TCGA-CV-7411-01 1 38305745 38305745 C T MTF1 Missense_Mutation p.R165Q 0.19 deleterious(0.01) benign(0.025) TCGA-CV-7411-01 1 6257724 6257725 - T RPL22 Frame_Shift_Ins p.D35Efs*6 0.15 TCGA-CV-7411-01 1 75055287 75055287 G - C1orf173 Intron 0.23 TCGA-CV-7411-01 20 39793623 39793623 G A PLCG1 Missense_Mutation p.R423K 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-CV-7411-01 20 402811 402811 G T RBCK1 Nonsense_Mutation p.E320* 0.21 TCGA-CV-7411-01 20 61978195 61978195 G A CHRNA4 Silent p.Y593Y 0.06 TCGA-CV-7411-01 21 33063182 33063182 C T SCAF4 Missense_Mutation p.D605N 0.22 possibly_damaging(0.857) TCGA-CV-7411-01 21 37769777 37769777 G A CHAF1B Silent p.L182L 0.24 TCGA-CV-7411-01 22 30887573 30887573 G A SEC14L4 Silent p.L356L 0.09 TCGA-CV-7411-01 22 42266924 42266924 A T SREBF2 Missense_Mutation p.D251V 0.19 deleterious(0) probably_damaging(0.939) TCGA-CV-7411-01 22 42322147 42322147 G C TNFRSF13C Missense_Mutation p.R109G 0.17 tolerated(0.5) benign(0) TCGA-CV-7411-01 22 42322238 42322238 G C TNFRSF13C Silent p.L78L 0.33 TCGA-CV-7411-01 2 155102369 155102369 C - GALNT13 Frame_Shift_Del p.T244Ifs*10 0.18 TCGA-CV-7411-01 2 166856255 166856255 T C SCN1A Missense_Mutation p.Y1439C 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7411-01 2 210559592 210559592 A C MAP2 Missense_Mutation p.T900P 0.17 tolerated_low_confidence(0.07) benign(0.042) TCGA-CV-7411-01 2 211464248 211464248 A T CPS1 Missense_Mutation p.L510F 0.26 deleterious(0) possibly_damaging(0.678) TCGA-CV-7411-01 2 233243766 233243766 C T ALPP Silent p.A54A 0.20 TCGA-CV-7411-01 2 237032610 237032610 G T AGAP1 Silent p.L806L 0.22 TCGA-CV-7411-01 2 237032611 237032611 G A AGAP1 Missense_Mutation p.A807T 0.23 tolerated(0.44) benign(0.148) TCGA-CV-7411-01 2 240984616 240984616 G A OR6B3 Silent p.L292L 0.16 TCGA-CV-7411-01 2 36691747 36691747 C T CRIM1 Missense_Mutation p.R314C 0.20 deleterious(0) probably_damaging(0.988) TCGA-CV-7411-01 2 80530211 80530211 A T LRRTM1 Missense_Mutation p.V245E 0.23 deleterious(0) benign(0.273) TCGA-CV-7411-01 2 90121878 90121878 C T IGKV1D-17 Silent p.A32A 0.13 TCGA-CV-7411-01 2 99013277 99013277 G A CNGA3 Silent p.G548G 0.23 TCGA-CV-7411-01 3 122629868 122629868 G A SEMA5B Missense_Mutation p.A1093V 0.19 tolerated(0.08) benign(0.031) TCGA-CV-7411-01 3 137850095 137850095 G A A4GNT Missense_Mutation p.R2W 0.16 deleterious(0.01) benign(0.232) TCGA-CV-7411-01 3 140185547 140185547 G A CLSTN2 Missense_Mutation p.A440T 0.15 deleterious(0.03) probably_damaging(0.988) TCGA-CV-7411-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.21 tolerated(0.06) possibly_damaging(0.801) TCGA-CV-7411-01 3 30715717 30715717 T C TGFBR2 Missense_Mutation p.S484P 0.36 deleterious(0) probably_damaging(0.995) TCGA-CV-7411-01 3 52552020 52552020 G C STAB1 Splice_Site p.X1587_splice 0.18 TCGA-CV-7411-01 4 1016192 1016192 C T FGFRL1 Missense_Mutation p.A94V 0.17 deleterious(0) probably_damaging(0.964) TCGA-CV-7411-01 4 122800994 122800994 C T TRPC3 Missense_Mutation p.R888H 0.23 deleterious(0.02) possibly_damaging(0.572) TCGA-CV-7411-01 4 126336256 126336256 T A FAT4 Missense_Mutation p.D2046E 0.16 probably_damaging(0.997) TCGA-CV-7411-01 4 13602988 13602988 C A BOD1L1 Missense_Mutation p.A1846S 0.17 benign(0.025) TCGA-CV-7411-01 4 48523208 48523208 C A FRYL Nonsense_Mutation p.E2516* 0.22 TCGA-CV-7411-01 4 56823519 56823519 G A CEP135 Silent p.V201V 0.17 TCGA-CV-7411-01 4 70713465 70713465 T C SULT1E1 Missense_Mutation p.K181R 0.04 tolerated(0.3) possibly_damaging(0.794) TCGA-CV-7411-01 4 71020037 71020037 T C C4orf40 5'UTR 0.20 TCGA-CV-7411-01 4 84348802 84348802 C T HELQ Missense_Mutation p.E864K 0.17 tolerated(0.21) benign(0.085) TCGA-CV-7411-01 4 91389411 91389411 G A CCSER1 Missense_Mutation p.V544I 0.13 tolerated(0.74) benign(0.005) TCGA-CV-7411-01 5 132094439 132094439 C A SEPT8 Intron 0.22 TCGA-CV-7411-01 5 140476702 140476702 C T PCDHB2 Silent p.F776F 0.18 TCGA-CV-7411-01 5 150027825 150027825 C T SYNPO Silent p.V240V 0.31 TCGA-CV-7411-01 5 150922849 150922849 A C FAT2 Missense_Mutation p.D2613E 0.20 probably_damaging(1) TCGA-CV-7411-01 5 156514184 156514184 C T HAVCR2 Missense_Mutation p.E279K 0.20 deleterious(0.03) benign(0.218) TCGA-CV-7411-01 5 169502981 169502981 C A DOCK2 Missense_Mutation p.H1587N 0.17 deleterious(0) probably_damaging(0.988) TCGA-CV-7411-01 5 23527544 23527544 C T PRDM9 Missense_Mutation p.R783W 0.16 deleterious(0) unknown(0) TCGA-CV-7411-01 5 70948526 70948526 G T MCCC2 Nonsense_Mutation p.E507* 0.20 TCGA-CV-7411-01 6 111214900 111214900 C T AMD1 3'UTR 0.18 TCGA-CV-7411-01 6 132195426 132195426 A G ENPP1 Silent p.K528K 0.19 TCGA-CV-7411-01 6 152647096 152647096 G T SYNE1 Missense_Mutation p.H5145Q 0.11 benign(0.404) TCGA-CV-7411-01 6 155153217 155153217 C T SCAF8 Missense_Mutation p.S835F 0.10 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-CV-7411-01 6 26205150 26205150 G C HIST1H4E Missense_Mutation p.R93T 0.11 deleterious(0) probably_damaging(0.992) TCGA-CV-7411-01 6 31474816 31474816 G A MICB Missense_Mutation p.V211I 0.20 tolerated(0.12) probably_damaging(0.973) TCGA-CV-7411-01 7 130039889 130039889 C A CEP41 Missense_Mutation p.D322Y 0.14 deleterious(0) possibly_damaging(0.806) TCGA-CV-7411-01 7 157208714 157208714 G A DNAJB6 Silent p.L301L 0.33 TCGA-CV-7411-01 7 18788641 18788641 C T HDAC9 Silent p.D641D 0.24 TCGA-CV-7411-01 7 33185916 33185916 G C BBS9 Missense_Mutation p.E18Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-7411-01 7 47920383 47920383 T C PKD1L1 Missense_Mutation p.T1155A 0.17 deleterious(0) probably_damaging(0.91) TCGA-CV-7411-01 7 87081037 87081037 C T ABCB4 Missense_Mutation p.A204T 0.16 tolerated(0.96) benign(0.034) TCGA-CV-7411-01 8 144993120 144993122 GAT - PLEC In_Frame_Del p.I3760del 0.18 TCGA-CV-7411-01 8 36673194 36673194 C G KCNU1 Silent p.L328L 0.18 TCGA-CV-7411-01 8 37793279 37793279 T C GOT1L1 Missense_Mutation p.N291S 0.28 tolerated(1) benign(0.007) TCGA-CV-7411-01 8 68208832 68208832 G A ARFGEF1 Missense_Mutation p.A158V 0.09 tolerated(1) benign(0.081) TCGA-CV-7411-01 8 94748464 94748464 G A RBM12B Missense_Mutation p.R59C 0.23 tolerated(0.12) probably_damaging(0.999) TCGA-CV-7411-01 9 100137790 100137790 C A CCDC180 Silent p.L1631L 0.21 TCGA-CV-7411-01 9 100849406 100849406 G A TRIM14 3'UTR 0.13 TCGA-CV-7411-01 9 121971050 121971050 G A BRINP1 Silent p.F364F 0.22 TCGA-CV-7411-01 9 131345356 131345356 G T SPTAN1 Missense_Mutation p.D603Y 0.22 deleterious(0) probably_damaging(1) TCGA-CV-7411-01 9 139401394 139401394 G T NOTCH1 Nonsense_Mutation p.C1225* 0.30 TCGA-CV-7411-01 9 35389887 35389887 C A UNC13B Missense_Mutation p.N964K 0.21 deleterious(0) possibly_damaging(0.86) TCGA-CV-7411-01 X 100497333 100497333 C A DRP2 Missense_Mutation p.S283Y 0.16 deleterious(0) benign(0.305) TCGA-CV-7411-01 X 118222748 118222748 G A KIAA1210 Silent p.F815F 0.18 TCGA-CV-7411-01 X 135428693 135428693 C T GPR112 Missense_Mutation p.S943L 0.17 deleterious(0.04) possibly_damaging(0.769) TCGA-CV-7411-01 X 153135917 153135917 G A L1CAM Silent p.F244F 0.22 TCGA-CV-7411-01 X 77245061 77245061 A T ATP7A Missense_Mutation p.R315W 0.17 deleterious(0) probably_damaging(0.911) TCGA-CV-7413-01 10 100150727 100150727 G A PYROXD2 Intron 0.18 TCGA-CV-7413-01 10 103826339 103826339 G A HPS6 Missense_Mutation p.E370K 0.19 tolerated(0.09) benign(0.231) TCGA-CV-7413-01 10 106899230 106899230 T C SORCS3 Missense_Mutation p.Y430H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7413-01 10 11370983 11370983 G A CELF2 Silent p.L511L 0.18 TCGA-CV-7413-01 10 12191922 12191922 G A SEC61A2 Missense_Mutation p.E142K 0.20 tolerated(0.13) benign(0.007) TCGA-CV-7413-01 11 102448025 102448025 C A MMP20 3'UTR 0.32 TCGA-CV-7413-01 11 219014 219014 C T SIRT3 Missense_Mutation p.A333T 0.36 tolerated(0.44) benign(0.003) TCGA-CV-7413-01 11 5274626 5274626 T A HBG2 Missense_Mutation p.N109Y 0.17 deleterious(0.04) probably_damaging(0.993) TCGA-CV-7413-01 11 55322484 55322484 G T OR4C15 Missense_Mutation p.L234F 0.18 deleterious_low_confidence(0.02) benign(0.121) TCGA-CV-7413-01 12 10213747 10213747 C T CLEC9A Missense_Mutation p.A65V 0.19 tolerated(0.66) benign(0.016) TCGA-CV-7413-01 12 113444282 113444282 A G OAS2 Silent p.K511K 0.26 TCGA-CV-7413-01 12 12940351 12940353 TCT - APOLD1 In_Frame_Del p.F204del 0.32 TCGA-CV-7413-01 12 130892282 130892282 C T RIMBP2 Missense_Mutation p.V972I 0.21 tolerated(0.17) benign(0.01) TCGA-CV-7413-01 12 4665701 4665701 T C RAD51AP1 Intron 0.16 TCGA-CV-7413-01 12 53217762 53217762 C T KRT79 Missense_Mutation p.G352E 0.21 deleterious(0.02) possibly_damaging(0.477) TCGA-CV-7413-01 12 55945682 55945682 G T OR6C4 Silent p.L224L 0.17 TCGA-CV-7413-01 12 57579467 57579467 G T LRP1 Missense_Mutation p.R2206L 0.21 probably_damaging(0.998) TCGA-CV-7413-01 12 7469847 7469847 C T ACSM4 Silent p.S245S 0.50 TCGA-CV-7413-01 12 8386935 8386935 C T RP11-266K4.9 5'Flank 0.09 TCGA-CV-7413-01 14 77844099 77844099 G A SAMD15 Missense_Mutation p.R113K 0.13 tolerated(0.81) benign(0.421) TCGA-CV-7413-01 15 100657103 100657103 C T ADAMTS17 Missense_Mutation p.D613N 0.34 tolerated(0.14) benign(0.306) TCGA-CV-7413-01 15 78526821 78526821 C T ACSBG1 Missense_Mutation p.G8E 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-CV-7413-01 15 87531246 87531246 C G AGBL1 Missense_Mutation p.H1038D 0.29 unknown(0) TCGA-CV-7413-01 16 15128328 15128328 G A PDXDC1 Silent p.Q640Q 0.22 TCGA-CV-7413-01 16 29994159 29994159 G A TAOK2 Missense_Mutation p.M312I 0.26 deleterious(0.04) benign(0.047) TCGA-CV-7413-01 16 50830465 50830465 C T CYLD 3'UTR 0.21 TCGA-CV-7413-01 16 67876720 67876720 G C THAP11 Missense_Mutation p.R88P 0.29 tolerated(0.11) unknown(0) TCGA-CV-7413-01 17 17696924 17696924 C T RAI1 Missense_Mutation p.T221I 0.33 deleterious(0.01) benign(0.432) TCGA-CV-7413-01 17 34077219 34077219 G A GAS2L2 Silent p.L168L 0.18 TCGA-CV-7413-01 17 43343801 43343801 C T SPATA32 5'Flank 0.26 TCGA-CV-7413-01 17 43472974 43472974 G A ARHGAP27 Missense_Mutation p.R499C 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7413-01 17 7579374 7579374 C A TP53 Missense_Mutation p.G105C 0.46 deleterious(0) probably_damaging(1) TCGA-CV-7413-01 18 14782606 14782606 A C ANKRD30B Missense_Mutation p.E521D 0.30 tolerated(0.08) benign(0.041) TCGA-CV-7413-01 18 21444832 21444832 G A LAMA3 Silent p.P1556P 0.05 TCGA-CV-7413-01 18 47340565 47340565 C T ACAA2 5'Flank 0.12 TCGA-CV-7413-01 18 65179933 65179933 T A DSEL Missense_Mutation p.D648V 0.20 deleterious(0) probably_damaging(0.995) TCGA-CV-7413-01 19 11018790 11018790 C T CARM1 Missense_Mutation p.T141M 0.16 deleterious(0) probably_damaging(0.997) TCGA-CV-7413-01 19 11280802 11280802 G A KANK2 Silent p.C786C 0.25 TCGA-CV-7413-01 19 39879970 39879970 G A PAF1 Missense_Mutation p.S138F 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-7413-01 19 55250985 55250985 G A KIR2DL3 Missense_Mutation p.E23K 0.19 tolerated(0.81) benign(0.137) TCGA-CV-7413-01 19 55450492 55450492 C G NLRP7 Silent p.V565V 0.32 TCGA-CV-7413-01 1 10239993 10239993 G A UBE4B Silent p.E1296E 0.15 TCGA-CV-7413-01 1 11561896 11561896 G A PTCHD2 Missense_Mutation p.G283S 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-7413-01 1 166985521 166985521 C T MAEL Missense_Mutation p.A303V 0.16 tolerated(0.05) possibly_damaging(0.532) TCGA-CV-7413-01 1 167095880 167095880 G A DUSP27 Silent p.A504A 0.28 TCGA-CV-7413-01 1 178411963 178411963 G A RASAL2 Missense_Mutation p.G361S 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-CV-7413-01 1 18023742 18023742 G T ARHGEF10L Missense_Mutation p.C1236F 0.26 deleterious(0.01) benign(0.397) TCGA-CV-7413-01 1 202935050 202935050 C T CYB5R1 Missense_Mutation p.D104N 0.17 deleterious(0.02) benign(0.012) TCGA-CV-7413-01 1 230381875 230381875 G A GALNT2 Missense_Mutation p.A266T 0.14 deleterious(0.02) probably_damaging(1) TCGA-CV-7413-01 1 32628883 32628883 A G KPNA6 Missense_Mutation p.N320S 0.23 deleterious(0) probably_damaging(0.974) TCGA-CV-7413-01 20 50140118 50140118 G A NFATC2 Missense_Mutation p.S221L 0.22 deleterious(0) probably_damaging(0.998) TCGA-CV-7413-01 21 31965096 31965096 G A KRTAP6-3 Silent p.%3D 0.21 TCGA-CV-7413-01 2 141806672 141806672 G T LRP1B Missense_Mutation p.P558T 0.20 possibly_damaging(0.641) TCGA-CV-7413-01 2 164467771 164467771 C T FIGN Missense_Mutation p.G191R 0.13 deleterious(0) possibly_damaging(0.624) TCGA-CV-7413-01 2 18757571 18757571 C T NT5C1B Missense_Mutation p.R463H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-7413-01 2 202131394 202131394 T C CASP8 Missense_Mutation p.L121P 0.20 deleterious(0) probably_damaging(0.997) TCGA-CV-7413-01 2 98914449 98914449 C T VWA3B Silent p.S1079S 0.13 TCGA-CV-7413-01 3 123339322 123339322 C T MYLK Intron 0.14 TCGA-CV-7413-01 3 156396202 156396202 G A TIPARP Missense_Mutation p.G239E 0.14 tolerated(0.15) benign(0.014) TCGA-CV-7413-01 3 56044571 56044571 C T ERC2 Missense_Mutation p.R609Q 0.20 tolerated(0.14) possibly_damaging(0.595) TCGA-CV-7413-01 4 126371855 126371855 G C FAT4 Silent p.V3228V 0.15 TCGA-CV-7413-01 4 151842388 151842388 G A LRBA Missense_Mutation p.P203S 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7413-01 4 187549812 187549812 G A FAT1 Nonsense_Mutation p.Q1477* 0.26 TCGA-CV-7413-01 5 132269973 132269973 C T AFF4 Missense_Mutation p.G262R 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7413-01 5 140475797 140475797 G A PCDHB2 Missense_Mutation p.V475I 0.22 tolerated_low_confidence(0.47) benign(0.113) TCGA-CV-7413-01 5 140595724 140595724 G C PCDHB13 Missense_Mutation p.A677P 0.23 tolerated_low_confidence(0.15) benign(0.004) TCGA-CV-7413-01 5 14488246 14488246 G C TRIO Silent p.P2503P 0.19 TCGA-CV-7413-01 5 161324468 161324468 G T GABRA1 3'UTR 0.15 TCGA-CV-7413-01 5 167673804 167673804 G A TENM2 Missense_Mutation p.E1954K 0.23 deleterious(0.01) possibly_damaging(0.665) TCGA-CV-7413-01 5 56546884 56546884 C T GPBP1 Missense_Mutation p.A366V 0.33 tolerated(0.08) benign(0.204) TCGA-CV-7413-01 5 86681171 86681171 C T RASA1 Nonsense_Mutation p.Q938* 0.13 TCGA-CV-7413-01 5 89970029 89970029 C A GPR98 Silent p.I1696I 0.33 TCGA-CV-7413-01 6 26240713 26240713 C T HIST1H4F Silent p.R20R 0.22 TCGA-CV-7413-01 6 27834874 27834874 G T HIST1H1B Missense_Mutation p.A145D 0.17 tolerated(0.21) unknown(0) TCGA-CV-7413-01 6 44254022 44254022 C T TCTE1 Silent p.A175A 0.32 TCGA-CV-7413-01 7 126746580 126746580 C T GRM8 Missense_Mutation p.E233K 0.26 tolerated(0.07) possibly_damaging(0.579) TCGA-CV-7413-01 7 2552941 2552941 C T LFNG Silent p.Y66Y 0.22 TCGA-CV-7413-01 8 133141591 133141591 G A KCNQ3 Missense_Mutation p.T846M 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7413-01 8 145107418 145107418 G A OPLAH Silent p.N1079N 0.30 TCGA-CV-7413-01 8 21976769 21976769 C T HR Missense_Mutation p.G1002E 0.14 deleterious(0) probably_damaging(1) TCGA-CV-7413-01 8 24209561 24209561 C G ADAM28 Missense_Mutation p.S747C 0.13 deleterious(0) possibly_damaging(0.784) TCGA-CV-7413-01 8 37702531 37702531 G C BRF2 Missense_Mutation p.S246C 0.27 deleterious(0.01) probably_damaging(0.971) TCGA-CV-7413-01 8 94746535 94746535 G A RBM12B Missense_Mutation p.P702S 0.20 tolerated_low_confidence(0.33) benign(0.013) TCGA-CV-7413-01 8 9605599 9605599 G A TNKS Silent p.A903A 0.17 TCGA-CV-7413-01 9 104170879 104170879 G A ZNF189 Missense_Mutation p.E277K 0.34 tolerated(0.69) benign(0.312) TCGA-CV-7413-01 9 127177670 127177670 C T PSMB7 Missense_Mutation p.G12E 0.36 deleterious(0) possibly_damaging(0.495) TCGA-CV-7413-01 9 140174120 140174120 C T TOR4A Missense_Mutation p.R327C 0.78 tolerated(0.2) benign(0.446) TCGA-CV-7413-01 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.37 TCGA-CV-7413-01 9 35658653 35658653 G A CCDC107 Missense_Mutation p.A63T 0.33 deleterious(0) benign(0.144) TCGA-CV-7413-01 9 382632 382632 G A DOCK8 Missense_Mutation p.A909T 0.19 tolerated(0.26) benign(0.002) TCGA-CV-7413-01 X 105937342 105937342 A G RNF128 Missense_Mutation p.Y10C 0.20 tolerated(0.16) benign(0.264) TCGA-CV-7413-01 X 106228467 106228468 - T MORC4 Frame_Shift_Ins p.M178Nfs*23 0.19 TCGA-CV-7413-01 X 148055022 148055022 G A AFF2 Missense_Mutation p.V1097M 0.22 deleterious(0) probably_damaging(0.995) TCGA-CV-7413-01 X 17744146 17744146 G A NHS Silent p.T619T 0.21 TCGA-CV-7413-01 X 73524270 73524270 G T ZCCHC13 Missense_Mutation p.A57S 0.15 deleterious(0.01) possibly_damaging(0.735) TCGA-CV-7414-01 10 129224216 129224216 G C DOCK1 Missense_Mutation p.E1598Q 0.22 tolerated(0.1) benign(0.193) TCGA-CV-7414-01 10 135346344 135346344 C G CYP2E1 Missense_Mutation p.T266S 0.42 deleterious(0) benign(0.354) TCGA-CV-7414-01 10 135370596 135370596 C G SYCE1 Missense_Mutation p.E147Q 0.05 deleterious(0.02) probably_damaging(0.975) TCGA-CV-7414-01 10 135440256 135440256 C T FRG2B 5'UTR 0.08 TCGA-CV-7414-01 10 18276458 18276458 C T SLC39A12 Silent p.L383L 0.35 TCGA-CV-7414-01 10 27035305 27035305 G A PDSS1 Missense_Mutation p.C384Y 0.11 deleterious(0) probably_damaging(0.984) TCGA-CV-7414-01 10 38121209 38121209 C G ZNF248 Silent p.G358G 0.34 TCGA-CV-7414-01 10 43882509 43882509 C T HNRNPF Missense_Mutation p.R275K 0.58 tolerated(0.49) benign(0.134) TCGA-CV-7414-01 10 45430193 45430193 G C TMEM72 Missense_Mutation p.E147Q 0.08 tolerated(0.15) probably_damaging(0.999) TCGA-CV-7414-01 10 45799279 45799279 C T OR13A1 Missense_Mutation p.E198K 0.40 deleterious(0.02) possibly_damaging(0.84) TCGA-CV-7414-01 10 46250521 46250521 G A FAM21C Missense_Mutation p.D460N 0.42 tolerated(0.97) benign(0.244) TCGA-CV-7414-01 10 50122006 50122006 G C LRRC18 Missense_Mutation p.I65M 0.30 deleterious(0) probably_damaging(0.954) TCGA-CV-7414-01 10 73326583 73326583 C T CDH23 Nonsense_Mutation p.Q172* 0.07 TCGA-CV-7414-01 10 882344 882344 T A LARP4B Missense_Mutation p.E250V 0.33 deleterious(0) possibly_damaging(0.694) TCGA-CV-7414-01 10 89536107 89536107 C T ATAD1 Missense_Mutation p.D221N 0.57 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 10 98064368 98064368 C T DNTT Silent p.F38F 0.52 TCGA-CV-7414-01 11 105880399 105880399 C G MSANTD4 Missense_Mutation p.E301Q 0.07 deleterious(0.02) probably_damaging(0.991) TCGA-CV-7414-01 11 123900988 123900988 T C OR10G8 Missense_Mutation p.I220T 0.71 deleterious(0.01) benign(0.262) TCGA-CV-7414-01 11 1858629 1858629 C G SYT8 Missense_Mutation p.L392V 0.56 tolerated(0.18) unknown(0) TCGA-CV-7414-01 11 19209824 19209824 G A CSRP3 Missense_Mutation p.T47M 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7414-01 11 294725 294725 C G ATHL1 Silent p.L730L 0.06 TCGA-CV-7414-01 11 46625165 46625165 G A HARBI1 Missense_Mutation p.P322L 0.42 tolerated(0.09) benign(0.002) TCGA-CV-7414-01 11 48166647 48166647 C G PTPRJ Nonsense_Mutation p.S961* 0.07 TCGA-CV-7414-01 11 55419207 55419207 C T OR4S2 Silent p.I276I 0.03 TCGA-CV-7414-01 11 62297223 62297223 C G AHNAK Missense_Mutation p.E1556Q 0.33 probably_damaging(0.998) TCGA-CV-7414-01 11 65789074 65789074 C G CATSPER1 Silent p.L528L 0.60 TCGA-CV-7414-01 11 67941319 67941319 C G SUV420H1 Missense_Mutation p.R202T 0.36 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 11 68029521 68029521 G A C11orf24 Silent p.I314I 0.23 TCGA-CV-7414-01 11 7335110 7335110 C G SYT9 Missense_Mutation p.L328V 0.36 tolerated(0.08) benign(0.057) TCGA-CV-7414-01 11 77301533 77301533 G A AQP11 Missense_Mutation p.A166T 0.70 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 11 794488 794488 G A SLC25A22 Missense_Mutation p.R58C 0.27 deleterious(0.01) probably_damaging(0.956) TCGA-CV-7414-01 11 82985036 82985036 C G CCDC90B Splice_Site p.X143_splice 0.55 TCGA-CV-7414-01 11 9007292 9007292 G A NRIP3 Silent p.G176G 0.46 TCGA-CV-7414-01 12 104341444 104341444 A G HSP90B1 3'UTR 0.30 TCGA-CV-7414-01 12 111318961 111318961 G A CCDC63 Silent p.Q238Q 0.12 TCGA-CV-7414-01 12 11214516 11214516 C T TAS2R46 Silent p.K126K 0.32 TCGA-CV-7414-01 12 113614854 113614854 C T DDX54 Intron 0.28 TCGA-CV-7414-01 12 117968797 117968797 G A KSR2 Missense_Mutation p.T584M 0.38 tolerated(0.12) benign(0.148) TCGA-CV-7414-01 12 119568510 119568510 G A SRRM4 Silent p.G214G 0.56 TCGA-CV-7414-01 12 125397967 125397967 C G UBC Missense_Mutation p.Q117H 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7414-01 12 13764753 13764753 C T GRIN2B Missense_Mutation p.M562I 0.09 deleterious(0) benign(0.037) TCGA-CV-7414-01 12 2061703 2061703 G C DCP1B Missense_Mutation p.S468C 0.08 deleterious(0.01) possibly_damaging(0.687) TCGA-CV-7414-01 12 46760703 46760703 C T SLC38A2 Silent p.V169V 0.29 TCGA-CV-7414-01 12 50500130 50500130 C T GPD1 Silent p.L140L 0.50 TCGA-CV-7414-01 12 52908677 52908677 C G KRT5 3'UTR 0.13 TCGA-CV-7414-01 12 53899914 53899914 C T TARBP2 Silent p.I361I 0.25 TCGA-CV-7414-01 12 54332775 54332775 G A HOXC13 Missense_Mutation p.G29S 0.50 tolerated_low_confidence(0.2) possibly_damaging(0.862) TCGA-CV-7414-01 12 57430774 57430774 C T MYO1A Silent p.L719L 0.36 TCGA-CV-7414-01 12 7079798 7079798 G C PHB2 5'UTR 0.30 TCGA-CV-7414-01 12 94244018 94244018 C T CRADD Missense_Mutation p.P191S 0.28 tolerated(0.27) benign(0.384) TCGA-CV-7414-01 13 113481013 113481013 C G ATP11A Silent p.L343L 0.16 TCGA-CV-7414-01 13 31233392 31233392 G C USPL1 Missense_Mutation p.D1060H 0.11 deleterious(0) probably_damaging(0.981) TCGA-CV-7414-01 13 46092895 46092895 A G COG3 Splice_Site p.X644_splice 0.09 TCGA-CV-7414-01 13 46732751 46732751 C G LCP1 Missense_Mutation p.K88N 0.25 tolerated(0.25) benign(0.016) TCGA-CV-7414-01 14 106321097 106321097 C T IGHM Missense_Mutation p.G298R 0.61 tolerated(0.08) possibly_damaging(0.878) TCGA-CV-7414-01 14 20978796 20978796 A T RNASE10 Missense_Mutation p.T56S 0.42 tolerated(0.11) benign(0.065) TCGA-CV-7414-01 14 23310776 23310776 C T MMP14 Missense_Mutation p.S62L 0.13 tolerated(0.1) benign(0.438) TCGA-CV-7414-01 14 29237831 29237831 C T FOXG1 Missense_Mutation p.S449L 0.38 deleterious_low_confidence(0.05) benign(0.368) TCGA-CV-7414-01 14 32560615 32560615 A G ARHGAP5 Missense_Mutation p.D247G 0.37 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 14 33004796 33004796 A G AKAP6 Missense_Mutation p.I121V 0.33 deleterious(0.02) probably_damaging(0.977) TCGA-CV-7414-01 14 36103865 36103865 A G RALGAPA1 Silent p.F1464F 0.31 TCGA-CV-7414-01 14 52156612 52156612 A G FRMD6 Missense_Mutation p.I20V 0.51 tolerated(1) benign(0.009) TCGA-CV-7414-01 14 52534779 52534779 C A NID2 Missense_Mutation p.A111S 0.27 tolerated(0.2) benign(0.062) TCGA-CV-7414-01 14 52741596 52741596 C T PTGDR Missense_Mutation p.R332W 0.46 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 14 60072193 60072193 G A RTN1 Nonsense_Mutation p.Q669* 0.27 TCGA-CV-7414-01 14 64988268 64988268 A T ZBTB1 Missense_Mutation p.N16Y 0.36 tolerated(0.1) benign(0.012) TCGA-CV-7414-01 14 68151825 68151825 G C RDH11 Missense_Mutation p.S254C 0.06 tolerated(0.18) possibly_damaging(0.711) TCGA-CV-7414-01 14 68196078 68196078 C G RDH12 Missense_Mutation p.L277V 0.06 tolerated(1) benign(0.021) TCGA-CV-7414-01 14 72138364 72138364 T C SIPA1L1 Silent p.S928S 0.58 TCGA-CV-7414-01 14 72939626 72939626 C G RGS6 Missense_Mutation p.Q195E 0.04 deleterious(0) possibly_damaging(0.742) TCGA-CV-7414-01 14 75151182 75151182 C A AREL1 Missense_Mutation p.G73V 0.05 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 14 78028787 78028787 G C SPTLC2 Missense_Mutation p.L268V 0.42 deleterious(0.04) possibly_damaging(0.838) TCGA-CV-7414-01 14 90446954 90446954 G C TDP1 Missense_Mutation p.D288H 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 14 90783141 90783141 G C NRDE2 Nonsense_Mutation p.S63* 0.18 TCGA-CV-7414-01 14 94245530 94245530 G C PRIMA1 Missense_Mutation p.S74C 0.30 tolerated(0.23) benign(0.009) TCGA-CV-7414-01 15 23890666 23890666 G A MAGEL2 Missense_Mutation p.R139C 0.40 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-CV-7414-01 15 24923324 24923324 T A NPAP1 Silent p.P770P 0.32 TCGA-CV-7414-01 15 43663547 43663547 G C TUBGCP4 5'UTR 0.40 TCGA-CV-7414-01 15 43708450 43708450 G C TP53BP1 Missense_Mutation p.L1616V 0.06 deleterious(0.02) probably_damaging(0.99) TCGA-CV-7414-01 15 50494767 50494767 G A SLC27A2 Missense_Mutation p.D258N 0.07 deleterious(0) probably_damaging(0.99) TCGA-CV-7414-01 15 50940979 50940979 C G TRPM7 Missense_Mutation p.E76Q 0.27 deleterious(0.01) probably_damaging(0.925) TCGA-CV-7414-01 15 52515861 52515861 C T MYO5C Silent p.L1169L 0.33 TCGA-CV-7414-01 15 53994481 53994481 G C WDR72 Silent p.L473L 0.06 TCGA-CV-7414-01 15 62258317 62258317 G A VPS13C Nonsense_Mutation p.Q1006* 0.33 TCGA-CV-7414-01 15 63017195 63017195 G C TLN2 Silent p.P1049P 0.36 TCGA-CV-7414-01 15 66601162 66601162 G T DIS3L Missense_Mutation p.V180L 0.35 tolerated(0.06) benign(0.02) TCGA-CV-7414-01 15 71302304 71302304 C T LRRC49 Silent p.F527F 0.43 TCGA-CV-7414-01 15 74536424 74536424 C T CCDC33 Silent p.T40T 0.40 TCGA-CV-7414-01 15 80181621 80181621 C G ST20-MTHFS Missense_Mutation p.E41Q 0.40 tolerated(0.26) benign(0.038) TCGA-CV-7414-01 15 86697725 86697725 G C AGBL1 Missense_Mutation p.R63S 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 16 15180300 15180300 G C RRN3 Missense_Mutation p.I88M 0.04 deleterious(0.04) probably_damaging(0.992) TCGA-CV-7414-01 16 18887543 18887543 T A SMG1 Missense_Mutation p.K598M 0.32 tolerated(0.09) benign(0.254) TCGA-CV-7414-01 16 19663399 19663399 G T C16orf62 Missense_Mutation p.Q825H 0.50 tolerated(0.18) benign(0.098) TCGA-CV-7414-01 16 23116857 23116857 G C USP31 Missense_Mutation p.H332D 0.21 deleterious(0) possibly_damaging(0.826) TCGA-CV-7414-01 16 23436072 23436072 A T COG7 Missense_Mutation p.L336Q 0.33 tolerated(0.14) benign(0.012) TCGA-CV-7414-01 16 30199516 30199516 C G CORO1A Missense_Mutation p.F337L 0.07 deleterious(0.02) benign(0.418) TCGA-CV-7414-01 16 3656527 3656527 C T SLX4 Silent p.A236A 0.36 TCGA-CV-7414-01 16 4491549 4491549 C G DNAJA3 Missense_Mutation p.F201L 0.24 deleterious(0.02) benign(0.049) TCGA-CV-7414-01 16 49559375 49559375 C T ZNF423 Missense_Mutation p.C1203Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-CV-7414-01 16 5081854 5081854 C T NAGPA Missense_Mutation p.E192K 0.08 benign(0.049) TCGA-CV-7414-01 16 56875739 56875739 C T NUP93 Silent p.R781R 0.67 TCGA-CV-7414-01 16 65032599 65032599 G A CDH11 Missense_Mutation p.A130V 0.70 tolerated(0.2) probably_damaging(0.998) TCGA-CV-7414-01 17 1373933 1373933 G T MYO1C Missense_Mutation p.L755I 0.33 tolerated(0.08) possibly_damaging(0.761) TCGA-CV-7414-01 17 16024584 16024584 C T NCOR1 Splice_Site p.X545_splice 0.04 TCGA-CV-7414-01 17 18023707 18023707 C G MYO15A Missense_Mutation p.F531L 0.31 benign(0.153) TCGA-CV-7414-01 17 18238931 18238931 A C SHMT1 Silent p.L291L 0.53 TCGA-CV-7414-01 17 18638380 18638380 G T TRIM16L Missense_Mutation p.E218D 0.90 tolerated(0.31) benign(0.123) TCGA-CV-7414-01 17 29220591 29220591 G C ATAD5 Missense_Mutation p.D1574H 0.19 deleterious(0) probably_damaging(0.997) TCGA-CV-7414-01 17 29221718 29221718 G C ATAD5 Missense_Mutation p.E1812Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 17 37421664 37421664 G A FBXL20 Nonsense_Mutation p.R326* 0.13 TCGA-CV-7414-01 17 37565028 37565028 G A MED1 Missense_Mutation p.S1149F 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-CV-7414-01 17 37565889 37565889 C T MED1 Missense_Mutation p.G862E 0.12 deleterious_low_confidence(0.01) benign(0.445) TCGA-CV-7414-01 17 38928008 38928008 C G KRT26 Missense_Mutation p.E120Q 0.09 tolerated(0.16) benign(0.038) TCGA-CV-7414-01 17 3928237 3928237 C T ZZEF1 Silent p.L2356L 0.06 TCGA-CV-7414-01 17 40932738 40932738 G C WNK4 Missense_Mutation p.E8Q 0.53 tolerated_low_confidence(0.09) unknown(0) TCGA-CV-7414-01 17 49057213 49057213 G C SPAG9 Silent p.G1101G 0.66 TCGA-CV-7414-01 17 60629712 60629712 C T TLK2 Missense_Mutation p.S194F 0.33 tolerated(0.17) benign(0.042) TCGA-CV-7414-01 17 61949939 61949939 C A CSH2 Missense_Mutation p.G152W 0.14 deleterious(0.04) benign(0.012) TCGA-CV-7414-01 17 64299066 64299066 G C PRKCA Missense_Mutation p.E33Q 0.32 tolerated(0.52) benign(0.158) TCGA-CV-7414-01 17 65119122 65119122 G C HELZ Silent p.V1198V 0.09 TCGA-CV-7414-01 17 7404130 7404130 G A POLR2A Missense_Mutation p.S615N 0.94 benign(0.006) TCGA-CV-7414-01 17 74287156 74287156 C G QRICH2 Missense_Mutation p.D1052H 0.36 deleterious(0) probably_damaging(0.98) TCGA-CV-7414-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.76 deleterious(0) probably_damaging(0.985) TCGA-CV-7414-01 17 7735024 7735024 C G DNAH2 Silent p.V4219V 0.18 TCGA-CV-7414-01 17 77710865 77710865 G A ENPP7 Missense_Mutation p.G351E 0.79 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 17 78321903 78321903 G A RNF213 Silent p.S3256S 0.84 TCGA-CV-7414-01 17 80789425 80789425 G C ZNF750 Nonsense_Mutation p.Y302* 0.79 TCGA-CV-7414-01 18 19995601 19995601 G T CTAGE1 Missense_Mutation p.P725Q 0.45 deleterious(0.01) probably_damaging(0.967) TCGA-CV-7414-01 18 29437875 29437875 T C TRAPPC8 Missense_Mutation p.N939S 0.36 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 18 346848 346848 C T COLEC12 Silent p.L258L 0.23 TCGA-CV-7414-01 18 42532870 42532870 C T SETBP1 Missense_Mutation p.R1189W 0.06 deleterious(0) probably_damaging(0.998) TCGA-CV-7414-01 18 63489364 63489364 C A CDH7 Missense_Mutation p.Q225K 0.33 tolerated(0.09) benign(0.101) TCGA-CV-7414-01 18 77513778 77513778 C T CTDP1 Silent p.N958N 0.40 TCGA-CV-7414-01 19 12776599 12776599 C T MAN2B1 Silent p.P60P 0.29 TCGA-CV-7414-01 19 12790281 12790281 C T DHPS Nonsense_Mutation p.W223* 0.42 TCGA-CV-7414-01 19 14562741 14562741 C - PKN1 Frame_Shift_Del p.F366Sfs*2 0.36 TCGA-CV-7414-01 19 1462153 1462153 C T APC2 Silent p.L610L 0.40 TCGA-CV-7414-01 19 1510410 1510410 G C ADAMTSL5 Missense_Mutation p.P70R 0.25 tolerated(0.21) benign(0.088) TCGA-CV-7414-01 19 19626011 19626011 A G TSSK6 Missense_Mutation p.F76L 0.30 tolerated(0.23) benign(0.005) TCGA-CV-7414-01 19 23544721 23544721 C G ZNF91 Missense_Mutation p.E354Q 0.30 tolerated(0.11) possibly_damaging(0.584) TCGA-CV-7414-01 19 30935350 30935350 G A ZNF536 Missense_Mutation p.R294H 0.43 tolerated(0.2) probably_damaging(0.999) TCGA-CV-7414-01 19 3179237 3179237 G A S1PR4 Silent p.R149R 0.06 TCGA-CV-7414-01 19 34890960 34890960 C G GPI 3'UTR 0.27 TCGA-CV-7414-01 19 36727335 36727335 C T ZNF146 5'UTR 0.29 TCGA-CV-7414-01 19 40196569 40196569 C T LGALS14 Missense_Mutation p.H8Y 0.08 deleterious_low_confidence(0.01) benign(0.043) TCGA-CV-7414-01 19 40363228 40363228 C T FCGBP Missense_Mutation p.E4948K 0.41 probably_damaging(0.974) TCGA-CV-7414-01 19 44680376 44680376 C T ZNF226 Missense_Mutation p.H321Y 0.11 tolerated(1) benign(0.406) TCGA-CV-7414-01 19 4859609 4859609 G A PLIN3 Missense_Mutation p.T114M 0.42 deleterious(0.01) possibly_damaging(0.816) TCGA-CV-7414-01 19 53385154 53385154 C T ZNF320 Silent p.Q75Q 0.06 TCGA-CV-7414-01 19 53652521 53652521 C G ZNF347 Missense_Mutation p.E39Q 0.36 deleterious(0) probably_damaging(0.994) TCGA-CV-7414-01 19 55451377 55451377 G A NLRP7 Silent p.C270C 0.43 TCGA-CV-7414-01 19 56166482 56166482 C T U2AF2 Silent p.F4F 0.23 TCGA-CV-7414-01 19 58361465 58361465 C G CTD-2583A14.10 Intron 0.17 TCGA-CV-7414-01 19 9085082 9085082 C T MUC16 Missense_Mutation p.E2245K 0.34 unknown(0) TCGA-CV-7414-01 19 9407596 9407596 C G ZNF699 Missense_Mutation p.E162Q 0.22 tolerated(0.06) benign(0.073) TCGA-CV-7414-01 1 103427750 103427750 T A COL11A1 Missense_Mutation p.R1032S 0.76 unknown(0) TCGA-CV-7414-01 1 13036375 13036375 G A PRAMEF22 Silent p.L149L 0.40 TCGA-CV-7414-01 1 13448416 13448416 G C PRAMEF13 Silent p.T353T 0.23 TCGA-CV-7414-01 1 157666065 157666065 C G FCRL3 Silent p.L299L 0.06 TCGA-CV-7414-01 1 159796654 159796654 C A SLAMF8 5'UTR 0.06 TCGA-CV-7414-01 1 161021182 161021182 C G ARHGAP30 Missense_Mutation p.E448Q 0.11 deleterious(0) probably_damaging(0.991) TCGA-CV-7414-01 1 166826757 166826757 C T TADA1 3'UTR 0.07 TCGA-CV-7414-01 1 17266512 17266512 G A CROCC Missense_Mutation p.D578N 0.15 possibly_damaging(0.891) TCGA-CV-7414-01 1 179815318 179815318 G C TOR1AIP2 Missense_Mutation p.S434C 0.07 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 1 182845596 182845596 C G DHX9 Missense_Mutation p.Q682E 0.09 tolerated(0.39) benign(0.124) TCGA-CV-7414-01 1 205499409 205499409 C T CDK18 Missense_Mutation p.S445L 0.06 deleterious(0.01) benign(0.303) TCGA-CV-7414-01 1 205892256 205892256 C T SLC26A9 Missense_Mutation p.R576K 0.26 tolerated(0.68) benign(0.003) TCGA-CV-7414-01 1 223958200 223958200 G A CAPN2 Missense_Mutation p.E626K 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7414-01 1 231473420 231473420 C T EXOC8 Silent p.A24A 0.11 TCGA-CV-7414-01 1 232615429 232615429 C T SIPA1L2 Missense_Mutation p.E677K 0.08 deleterious(0) probably_damaging(0.982) TCGA-CV-7414-01 1 236347168 236347168 G A GPR137B Missense_Mutation p.V310I 0.37 tolerated(0.16) benign(0.332) TCGA-CV-7414-01 1 247875239 247875239 A C OR6F1 Silent p.A273A 0.42 TCGA-CV-7414-01 1 38272639 38272639 T C YRDC Missense_Mutation p.I172V 0.47 tolerated(0.73) benign(0.029) TCGA-CV-7414-01 1 43830081 43830081 T C ELOVL1 Missense_Mutation p.M178V 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-7414-01 1 47403778 47403778 T G CYP4A11 Missense_Mutation p.Q76P 0.31 tolerated(0.24) benign(0.005) TCGA-CV-7414-01 1 52759159 52759159 C T ZFYVE9 Silent p.F1020F 0.35 TCGA-CV-7414-01 1 879608 879608 C T SAMD11 3'UTR 0.33 TCGA-CV-7414-01 1 9034714 9034714 T G CA6 3'Flank 0.42 TCGA-CV-7414-01 1 9097693 9097693 C T SLC2A5 Silent p.P486P 0.39 TCGA-CV-7414-01 1 9794124 9794124 C G CLSTN1 Silent p.L729L 0.36 TCGA-CV-7414-01 20 1517864 1517864 C G SIRPD Missense_Mutation p.E172Q 0.05 tolerated_low_confidence(0.13) benign(0.024) TCGA-CV-7414-01 20 21494272 21494272 G A NKX2-2 Silent p.V12V 0.11 TCGA-CV-7414-01 20 31829196 31829196 G A BPIFA1 Missense_Mutation p.G196D 0.38 tolerated(0.58) benign(0.034) TCGA-CV-7414-01 20 3210904 3210904 G A SLC4A11 Missense_Mutation p.S516L 0.41 deleterious(0) probably_damaging(0.987) TCGA-CV-7414-01 20 32677564 32677564 C T EIF2S2 Missense_Mutation p.R325Q 0.38 deleterious(0.02) benign(0.004) TCGA-CV-7414-01 20 36993299 36993299 G A LBP Missense_Mutation p.E272K 0.35 tolerated(0.23) benign(0.088) TCGA-CV-7414-01 20 40050616 40050616 G C CHD6 Silent p.L1553L 0.26 TCGA-CV-7414-01 20 43942191 43942191 G C RBPJL Missense_Mutation p.D235H 0.27 deleterious(0.03) possibly_damaging(0.853) TCGA-CV-7414-01 20 44577711 44577711 C G ZNF335 Missense_Mutation p.D1304H 0.15 deleterious(0) probably_damaging(0.993) TCGA-CV-7414-01 20 44757575 44757575 G C CD40 Missense_Mutation p.G244R 0.34 deleterious(0.04) benign(0.139) TCGA-CV-7414-01 20 47633821 47633821 T C ARFGEF2 Silent p.L1451L 0.42 TCGA-CV-7414-01 20 52198233 52198233 G T ZNF217 Missense_Mutation p.S378Y 0.09 deleterious(0.01) possibly_damaging(0.904) TCGA-CV-7414-01 21 31709900 31709900 G T KRTAP27-1 Silent p.T29T 0.30 TCGA-CV-7414-01 21 33686872 33686872 G T MRAP 3'Flank 0.45 TCGA-CV-7414-01 21 43412300 43412300 C G ZBTB21 Silent p.L635L 0.05 TCGA-CV-7414-01 21 43795836 43795836 C T TMPRSS3 Missense_Mutation p.E446K 0.33 tolerated(0.39) benign(0.063) TCGA-CV-7414-01 21 43816189 43816189 C T TMPRSS3 5'UTR 0.45 TCGA-CV-7414-01 22 18083871 18083871 C A ATP6V1E1 Missense_Mutation p.G118V 0.38 deleterious(0.01) benign(0.378) TCGA-CV-7414-01 22 30730681 30730681 T C SF3A1 Missense_Mutation p.I762V 0.35 deleterious(0.03) possibly_damaging(0.695) TCGA-CV-7414-01 22 37334191 37334191 A T CSF2RB Missense_Mutation p.R781W 0.30 tolerated(0.06) benign(0.014) TCGA-CV-7414-01 22 46319005 46319005 G C WNT7B Missense_Mutation p.Q261E 0.10 tolerated(0.19) benign(0.005) TCGA-CV-7414-01 2 100266105 100266105 G A AFF3 Silent p.L414L 0.09 TCGA-CV-7414-01 2 114257406 114257406 C T FOXD4L1 Silent p.F191F 0.06 TCGA-CV-7414-01 2 114257832 114257832 C G FOXD4L1 Silent p.V333V 0.11 TCGA-CV-7414-01 2 11733135 11733135 G A GREB1 Missense_Mutation p.E527K 0.21 deleterious(0) probably_damaging(0.996) TCGA-CV-7414-01 2 120439145 120439145 C G TMEM177 Missense_Mutation p.S239C 0.31 deleterious(0) probably_damaging(0.998) TCGA-CV-7414-01 2 1251141 1251141 G A SNTG2 Missense_Mutation p.D311N 0.32 tolerated(0.55) benign(0.005) TCGA-CV-7414-01 2 131981275 131981275 C G POTEE Missense_Mutation p.L210V 0.32 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-CV-7414-01 2 152398055 152398055 C T NEB Missense_Mutation p.R6863K 0.07 probably_damaging(0.919) TCGA-CV-7414-01 2 160194092 160194092 C T BAZ2B Silent p.R1882R 0.31 TCGA-CV-7414-01 2 168107133 168107133 G T XIRP2 Missense_Mutation p.E3077D 0.76 possibly_damaging(0.716) TCGA-CV-7414-01 2 174131080 174131080 G C MLTK Missense_Mutation p.E669Q 0.20 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-CV-7414-01 2 179413442 179413442 C G TTN Missense_Mutation p.D30971H 0.06 TCGA-CV-7414-01 2 202285154 202285154 G A TRAK2 Missense_Mutation p.S26L 0.11 tolerated(0.36) benign(0.003) TCGA-CV-7414-01 2 239079271 239079271 C T ILKAP Missense_Mutation p.R362H 0.43 tolerated(0.07) benign(0.427) TCGA-CV-7414-01 2 24299147 24299147 G C SF3B14 5'UTR 0.12 TCGA-CV-7414-01 2 24480764 24480764 G A ITSN2 Missense_Mutation p.R961W 0.38 deleterious(0.03) unknown(0) TCGA-CV-7414-01 2 24494796 24494796 C A ITSN2 Missense_Mutation p.G699V 0.76 tolerated(0.33) unknown(0) TCGA-CV-7414-01 2 27324289 27324289 G A CGREF1 Silent p.P270P 0.74 TCGA-CV-7414-01 2 27324303 27324303 C T CGREF1 Missense_Mutation p.E266K 0.76 tolerated_low_confidence(0.13) unknown(0) TCGA-CV-7414-01 2 28812554 28812554 G A PLB1 Missense_Mutation p.D645N 0.08 deleterious(0.01) probably_damaging(1) TCGA-CV-7414-01 2 29294945 29294945 C G C2orf71 Missense_Mutation p.R728T 0.06 deleterious(0) probably_damaging(0.997) TCGA-CV-7414-01 2 37520323 37520323 G C PRKD3 Nonsense_Mutation p.S127* 0.07 TCGA-CV-7414-01 2 39944277 39944277 C T TMEM178A Silent p.C260C 0.44 TCGA-CV-7414-01 2 69206027 69206027 C T GKN1 Nonsense_Mutation p.Q91* 0.06 TCGA-CV-7414-01 2 84777021 84777021 G A DNAH6 Missense_Mutation p.R442H 0.37 tolerated(0.2) benign(0.028) TCGA-CV-7414-01 2 86302279 86302279 G A POLR1A Silent p.S495S 0.78 TCGA-CV-7414-01 3 109028157 109028157 C T DPPA2 Missense_Mutation p.E68K 0.04 tolerated(0.47) benign(0.001) TCGA-CV-7414-01 3 11072889 11072889 T C SLC6A1 Silent p.F450F 0.21 TCGA-CV-7414-01 3 124646819 124646819 G C MUC13 Nonsense_Mutation p.S24* 0.04 TCGA-CV-7414-01 3 135870295 135870295 G C MSL2 Missense_Mutation p.C476W 0.29 deleterious(0) possibly_damaging(0.74) TCGA-CV-7414-01 3 137850006 137850006 G C A4GNT Missense_Mutation p.F31L 0.05 tolerated(0.21) benign(0.008) TCGA-CV-7414-01 3 139093347 139093347 G A COPB2 Silent p.I245I 0.31 TCGA-CV-7414-01 3 14799082 14799082 C T C3orf20 Silent p.I715I 0.12 TCGA-CV-7414-01 3 149039149 149039149 A C TM4SF18 3'UTR 0.62 TCGA-CV-7414-01 3 157160376 157160376 G C PTX3 Missense_Mutation p.E252Q 0.32 deleterious(0.02) benign(0.297) TCGA-CV-7414-01 3 164785231 164785231 T G SI Missense_Mutation p.K178Q 0.28 tolerated(0.67) benign(0) TCGA-CV-7414-01 3 170011198 170011198 G C PRKCI Missense_Mutation p.G440A 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 3 182923993 182923993 G C MCF2L2 Missense_Mutation p.L908V 0.08 tolerated(1) benign(0.011) TCGA-CV-7414-01 3 18462478 18462478 G C SATB1 5'UTR 0.12 TCGA-CV-7414-01 3 186504984 186504984 C G EIF4A2 Silent p.L280L 0.16 TCGA-CV-7414-01 3 20181763 20181763 C G KAT2B Missense_Mutation p.I637M 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 3 38888469 38888469 C G SCN11A Missense_Mutation p.D1698H 0.05 deleterious(0) benign(0.182) TCGA-CV-7414-01 3 38941542 38941542 G C SCN11A Missense_Mutation p.A622G 0.13 deleterious(0.03) probably_damaging(0.949) TCGA-CV-7414-01 3 46062824 46062824 C T XCR1 Missense_Mutation p.V206M 0.41 tolerated(0.07) benign(0.179) TCGA-CV-7414-01 3 49699342 49699342 C G BSN Nonsense_Mutation p.S3355* 0.09 TCGA-CV-7414-01 3 51708516 51708516 G C TEX264 Missense_Mutation p.E66Q 0.09 tolerated(0.05) probably_damaging(1) TCGA-CV-7414-01 3 72428559 72428559 G A RYBP Nonsense_Mutation p.Q149* 0.47 TCGA-CV-7414-01 3 9786777 9786777 G C BRPF1 Silent p.R1002R 0.38 TCGA-CV-7414-01 4 123160874 123160874 C G KIAA1109 Missense_Mutation p.S1346C 0.04 probably_damaging(0.982) TCGA-CV-7414-01 4 154502640 154502640 G C KIAA0922 Missense_Mutation p.E274Q 0.08 tolerated(0.06) probably_damaging(0.984) TCGA-CV-7414-01 4 186567862 186567862 T C SORBS2 Missense_Mutation p.Y315C 0.66 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 4 187173205 187173205 A G KLKB1 Silent p.G393G 0.61 TCGA-CV-7414-01 4 187539265 187539266 - C FAT1 Frame_Shift_Ins p.S2826Kfs*2 0.36 TCGA-CV-7414-01 4 40752793 40752793 C A NSUN7 Missense_Mutation p.S28Y 0.49 deleterious(0) possibly_damaging(0.542) TCGA-CV-7414-01 4 48581067 48581067 G C FRYL Missense_Mutation p.H817Q 0.38 tolerated(0.16) benign(0.017) TCGA-CV-7414-01 4 57777137 57777137 G C REST Silent p.L111L 0.25 TCGA-CV-7414-01 4 59346 59346 G A ZNF595 Silent p.V9V 0.23 TCGA-CV-7414-01 4 6055779 6055779 C T JAKMIP1 Missense_Mutation p.E602K 0.06 deleterious(0) probably_damaging(0.997) TCGA-CV-7414-01 4 6606982 6606982 G A MAN2B2 Silent p.L580L 0.83 TCGA-CV-7414-01 4 71509397 71509397 G A ENAM Missense_Mutation p.A752T 0.39 tolerated(0.06) benign(0.102) TCGA-CV-7414-01 4 7714493 7714493 G C SORCS2 Missense_Mutation p.W634C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 4 87028405 87028405 C T MAPK10 Missense_Mutation p.V113I 0.41 tolerated(0.53) possibly_damaging(0.904) TCGA-CV-7414-01 4 87754557 87754557 G A SLC10A6 Missense_Mutation p.S133F 0.23 deleterious(0) probably_damaging(0.984) TCGA-CV-7414-01 5 111500603 111500603 G C EPB41L4A 3'UTR 0.08 TCGA-CV-7414-01 5 114469606 114469606 G C TRIM36 Missense_Mutation p.I495M 0.15 tolerated(0.27) benign(0.029) TCGA-CV-7414-01 5 132427045 132427045 T C HSPA4 Silent p.D513D 0.33 TCGA-CV-7414-01 5 13885256 13885256 G A DNAH5 Missense_Mutation p.T942M 0.37 benign(0) TCGA-CV-7414-01 5 140308980 140308980 C A PCDHAC1 Intron 0.35 TCGA-CV-7414-01 5 140531735 140531735 G A PCDHB6 Missense_Mutation p.A633T 0.34 deleterious(0.03) possibly_damaging(0.492) TCGA-CV-7414-01 5 142500686 142500686 G C ARHGAP26 Missense_Mutation p.E558Q 0.21 deleterious(0.02) benign(0.438) TCGA-CV-7414-01 5 147807315 147807315 C G FBXO38 Intron 0.76 TCGA-CV-7414-01 5 36265071 36265071 G T RANBP3L Missense_Mutation p.T182K 0.35 tolerated(0.38) benign(0.104) TCGA-CV-7414-01 5 86672284 86672284 A G RASA1 Missense_Mutation p.I696V 0.20 tolerated(0.58) benign(0.001) TCGA-CV-7414-01 6 112430786 112430786 C G LAMA4 Splice_Site p.X1776_splice 0.46 TCGA-CV-7414-01 6 116574228 116574228 T C TSPYL4 Missense_Mutation p.Y315C 0.36 deleterious(0.02) probably_damaging(1) TCGA-CV-7414-01 6 146673517 146673517 G C GRM1 Missense_Mutation p.D440H 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-CV-7414-01 6 160222146 160222146 C G PNLDC1 Missense_Mutation p.L35V 0.04 deleterious(0) probably_damaging(0.968) TCGA-CV-7414-01 6 161469773 161469773 C G MAP3K4 Missense_Mutation p.R157G 0.09 tolerated(0.12) benign(0.001) TCGA-CV-7414-01 6 165746468 165746468 A T PDE10A 3'UTR 0.39 TCGA-CV-7414-01 6 170592437 170592437 C T DLL1 Missense_Mutation p.V644M 0.31 deleterious(0.01) possibly_damaging(0.454) TCGA-CV-7414-01 6 24409763 24409763 A G MRS2 Missense_Mutation p.I126V 0.36 tolerated(0.08) benign(0.279) TCGA-CV-7414-01 6 24843781 24843781 G C FAM65B Nonsense_Mutation p.S410* 0.15 TCGA-CV-7414-01 6 26104378 26104378 G C HIST1H4C Missense_Mutation p.R68P 0.25 deleterious(0) possibly_damaging(0.522) TCGA-CV-7414-01 6 36193116 36193116 G C BRPF3 Missense_Mutation p.R1085P 0.15 deleterious(0.01) probably_damaging(1) TCGA-CV-7414-01 6 39311516 39311516 G C KIF6 Missense_Mutation p.I799M 0.29 tolerated(0.16) benign(0.075) TCGA-CV-7414-01 6 44216418 44216418 C G HSP90AB1 Missense_Mutation p.Q18E 0.11 deleterious(0.02) benign(0.413) TCGA-CV-7414-01 6 53156755 53156755 C G ELOVL5 Missense_Mutation p.R22T 0.53 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 6 656504 656504 C T HUS1B Silent p.P147P 0.37 TCGA-CV-7414-01 6 7569532 7569532 C T DSP Silent p.I511I 0.30 TCGA-CV-7414-01 6 83863897 83863897 A T DOPEY1 Splice_Site p.X2130_splice 0.38 TCGA-CV-7414-01 7 100552889 100552889 G C MUC3A Missense_Mutation p.D512H 0.03 deleterious(0.05) possibly_damaging(0.848) TCGA-CV-7414-01 7 100686712 100686712 G A MUC17 Silent p.V4005V 0.03 TCGA-CV-7414-01 7 100686943 100686943 G A MUC17 Silent p.T4082T 0.12 TCGA-CV-7414-01 7 100855553 100855553 C T PLOD3 Missense_Mutation p.E370K 0.11 tolerated(0.27) benign(0.006) TCGA-CV-7414-01 7 100859523 100859523 C G PLOD3 Missense_Mutation p.E141D 0.14 tolerated(0.12) benign(0.177) TCGA-CV-7414-01 7 128366879 128366879 G A FAM71F1 Intron 0.14 TCGA-CV-7414-01 7 14027742 14027742 G A ETV1 Silent p.F34F 0.09 TCGA-CV-7414-01 7 21745088 21745088 T G DNAH11 Missense_Mutation p.L2167R 0.38 probably_damaging(1) TCGA-CV-7414-01 7 73952488 73952488 G A GTF2IRD1 Missense_Mutation p.E510K 0.07 tolerated(0.2) benign(0.039) TCGA-CV-7414-01 7 81964507 81964507 C G CACNA2D1 Missense_Mutation p.E80Q 0.35 tolerated(0.21) benign(0.037) TCGA-CV-7414-01 7 82595320 82595320 G A PCLO Missense_Mutation p.H1262Y 0.43 unknown(0) TCGA-CV-7414-01 7 89929196 89929196 T A C7orf63 Missense_Mutation p.F625I 0.44 tolerated(0.34) possibly_damaging(0.625) TCGA-CV-7414-01 7 92195342 92195342 G A FAM133B Nonsense_Mutation p.R215* 0.43 TCGA-CV-7414-01 7 99917593 99917593 G C SPDYE3 Missense_Mutation p.D544H 0.11 deleterious(0) probably_damaging(0.995) TCGA-CV-7414-01 8 100847876 100847876 A G VPS13B Silent p.L3309L 0.32 TCGA-CV-7414-01 8 101733737 101733737 C G PABPC1 Silent p.A25A 0.14 TCGA-CV-7414-01 8 103664280 103664280 G C KLF10 Missense_Mutation p.P94A 0.57 deleterious(0.01) probably_damaging(1) TCGA-CV-7414-01 8 114031357 114031357 G A CSMD3 Silent p.L323L 0.05 TCGA-CV-7414-01 8 143816795 143816795 G C THEM6 Missense_Mutation p.E189Q 0.25 tolerated(0.25) benign(0.021) TCGA-CV-7414-01 8 144621302 144621302 G A ZC3H3 Missense_Mutation p.R79W 0.58 deleterious(0.04) benign(0.022) TCGA-CV-7414-01 8 145947498 145947498 C T ZNF251 Missense_Mutation p.R516H 0.28 tolerated(0.1) possibly_damaging(0.522) TCGA-CV-7414-01 8 17159523 17159523 G A MTMR7 Intron 0.73 TCGA-CV-7414-01 8 37964677 37964677 G C ASH2L Missense_Mutation p.D132H 0.05 tolerated(0.08) possibly_damaging(0.57) TCGA-CV-7414-01 8 38172976 38172976 C T WHSC1L1 Silent p.S691S 0.10 TCGA-CV-7414-01 8 48650425 48650425 G A CEBPD Silent p.F86F 0.50 TCGA-CV-7414-01 8 52320812 52320812 C G PXDNL Missense_Mutation p.Q1124H 0.15 deleterious(0) possibly_damaging(0.516) TCGA-CV-7414-01 8 59511881 59511881 T C NSMAF Missense_Mutation p.S530G 0.40 deleterious(0.02) benign(0.109) TCGA-CV-7414-01 8 61778017 61778017 C G CHD7 Missense_Mutation p.T2840S 0.22 benign(0.089) TCGA-CV-7414-01 8 6357524 6357524 G T ANGPT2 3'UTR 0.60 TCGA-CV-7414-01 8 67834724 67834724 T A MCMDC2 3'Flank 0.44 TCGA-CV-7414-01 8 68071344 68071344 G C CSPP1 Missense_Mutation p.R832T 0.07 deleterious(0) probably_damaging(0.998) TCGA-CV-7414-01 8 94740469 94740469 G A FAM92A1 Missense_Mutation p.E272K 0.09 tolerated(0.23) benign(0.005) TCGA-CV-7414-01 8 95550492 95550492 C G KIAA1429 Missense_Mutation p.G88R 0.33 deleterious(0) probably_damaging(1) TCGA-CV-7414-01 8 98735238 98735238 G C MTDH Missense_Mutation p.K551N 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-7414-01 9 117015171 117015171 A C COL27A1 Missense_Mutation p.M1034L 0.40 unknown(0) TCGA-CV-7414-01 9 117797486 117797486 G C TNC Silent p.V1928V 0.09 TCGA-CV-7414-01 9 123169396 123169396 G C CDK5RAP2 Silent p.L1619L 0.24 TCGA-CV-7414-01 9 125154519 125154519 C T PTGS1 Missense_Mutation p.A499V 0.08 deleterious(0.02) probably_damaging(0.93) TCGA-CV-7414-01 9 131022404 131022404 C G GOLGA2 Missense_Mutation p.G581A 0.05 tolerated(1) benign(0.002) TCGA-CV-7414-01 9 131745290 131745290 C G NUP188 Missense_Mutation p.I593M 0.38 deleterious(0.01) possibly_damaging(0.835) TCGA-CV-7414-01 9 131783367 131783367 C A SH3GLB2 Intron 0.10 TCGA-CV-7414-01 9 135204799 135204799 C G SETX Missense_Mutation p.R729T 0.08 deleterious_low_confidence(0.01) benign(0.164) TCGA-CV-7414-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.79 TCGA-CV-7414-01 9 35099990 35099990 C T STOML2 3'UTR 0.46 TCGA-CV-7414-01 9 43628678 43628678 C G SPATA31A6 Silent p.P88P 0.55 TCGA-CV-7414-01 9 80537224 80537224 C T GNAQ Silent p.Q58Q 0.44 TCGA-CV-7414-01 X 30578057 30578057 G T CXorf21 Nonsense_Mutation p.S139* 0.80 TCGA-CV-7414-01 X 73964209 73964209 G A KIAA2022 Silent p.P61P 0.25 TCGA-CV-7414-01 X 8995923 8995923 C G FAM9B Missense_Mutation p.D160H 0.11 deleterious(0) possibly_damaging(0.882) TCGA-CV-7415-01 10 103826369 103826369 G A HPS6 Missense_Mutation p.A380T 0.09 tolerated(0.25) possibly_damaging(0.678) TCGA-CV-7415-01 10 105133180 105133180 G A TAF5 Missense_Mutation p.G209R 0.08 deleterious(0.01) probably_damaging(0.919) TCGA-CV-7415-01 10 135373623 135373623 C T SYCE1 Silent p.L36L 0.10 TCGA-CV-7415-01 10 26785285 26785285 A T APBB1IP Missense_Mutation p.E42V 0.23 deleterious(0) probably_damaging(0.926) TCGA-CV-7415-01 10 34408630 34408630 C T PARD3 Silent p.S1196S 0.29 TCGA-CV-7415-01 10 5948405 5948405 G A FBXO18 Missense_Mutation p.G239D 0.20 tolerated(0.51) benign(0.012) TCGA-CV-7415-01 10 61900111 61900111 C G ANK3 Intron 0.19 TCGA-CV-7415-01 10 64974590 64974590 G C JMJD1C Missense_Mutation p.A446G 0.41 tolerated_low_confidence(0.47) benign(0) TCGA-CV-7415-01 10 67726429 67726429 T A CTNNA3 Missense_Mutation p.I781F 0.25 deleterious(0) unknown(0) TCGA-CV-7415-01 10 87614310 87614310 G C GRID1 Silent p.V392V 0.21 TCGA-CV-7415-01 10 88259533 88259533 C T WAPAL Silent p.Q489Q 0.21 TCGA-CV-7415-01 11 6425033 6425033 G A APBB1 Silent p.N247N 0.53 TCGA-CV-7415-01 12 112082288 112082288 T C BRAP Silent p.R498R 0.19 TCGA-CV-7415-01 12 120636708 120636708 G C RPLP0 Missense_Mutation p.F138L 0.21 deleterious(0.03) benign(0.029) TCGA-CV-7415-01 12 123812541 123812541 A C SBNO1 Missense_Mutation p.L444V 0.15 tolerated(0.13) benign(0.308) TCGA-CV-7415-01 12 46315723 46315723 A G SCAF11 3'UTR 0.20 TCGA-CV-7415-01 12 4855415 4855415 T C GALNT8 Silent p.L388L 0.08 TCGA-CV-7415-01 12 57114924 57114924 G A NACA Silent p.T130T 0.11 TCGA-CV-7415-01 12 7559320 7559320 C T CD163L1 Missense_Mutation p.V299I 0.28 tolerated(0.73) possibly_damaging(0.751) TCGA-CV-7415-01 13 109318469 109318469 C T MYO16 Silent p.D66D 0.20 TCGA-CV-7415-01 13 29599504 29599504 C T MTUS2 Silent p.H233H 0.40 TCGA-CV-7415-01 14 23313687 23313687 G C MMP14 Missense_Mutation p.E373D 0.08 deleterious(0) probably_damaging(0.998) TCGA-CV-7415-01 14 31619322 31619322 C T HECTD1 Missense_Mutation p.D680N 0.12 deleterious(0) probably_damaging(0.937) TCGA-CV-7415-01 14 35343736 35343736 G C BAZ1A Missense_Mutation p.F25L 0.06 deleterious(0) benign(0.005) TCGA-CV-7415-01 14 47530684 47530684 T A MDGA2 Missense_Mutation p.E431D 0.38 tolerated(0.99) probably_damaging(0.995) TCGA-CV-7415-01 15 45437213 45437213 G T DUOX1 Missense_Mutation p.A753S 0.09 tolerated(0.25) benign(0.001) TCGA-CV-7415-01 15 91312807 91312807 G C BLM Missense_Mutation p.R849T 0.12 tolerated(0.05) benign(0.01) TCGA-CV-7415-01 16 23392188 23392188 C T SCNN1B 3'UTR 0.11 TCGA-CV-7415-01 16 58550236 58550236 C T SETD6 Silent p.H155H 0.10 TCGA-CV-7415-01 16 71318560 71318560 T A CMTR2 Nonsense_Mutation p.K422* 0.10 TCGA-CV-7415-01 16 72046004 72046004 C A DHODH Missense_Mutation p.S26Y 0.12 deleterious(0) possibly_damaging(0.498) TCGA-CV-7415-01 16 816458 816458 G C MSLN Missense_Mutation p.E400Q 0.13 tolerated(0.17) benign(0.02) TCGA-CV-7415-01 16 88873832 88873832 C G CDT1 Silent p.L473L 0.09 TCGA-CV-7415-01 17 11511572 11511572 G A DNAH9 Missense_Mutation p.G182R 0.07 probably_damaging(0.995) TCGA-CV-7415-01 17 40125676 40125676 G A CNP Missense_Mutation p.G334S 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7415-01 17 43175850 43175850 C T NMT1 Missense_Mutation p.H272Y 0.09 deleterious(0) probably_damaging(0.979) TCGA-CV-7415-01 17 5114008 5114008 G C SCIMP 3'UTR 0.62 TCGA-CV-7415-01 17 7578532 7578532 A T TP53 Missense_Mutation p.M133K 0.56 deleterious(0) benign(0.122) TCGA-CV-7415-01 18 47373592 47373592 C T MYO5B Silent p.R1461R 0.24 TCGA-CV-7415-01 19 16629998 16629998 C G CHERP Missense_Mutation p.R908P 0.19 deleterious(0) unknown(0) TCGA-CV-7415-01 19 40993612 40993612 G A SPTBN4 Missense_Mutation p.E60K 0.07 deleterious(0) benign(0.167) TCGA-CV-7415-01 19 43414874 43414874 C T PSG6 Missense_Mutation p.M188I 0.37 tolerated(0.57) benign(0.002) TCGA-CV-7415-01 19 49468783 49468783 C T FTL Nonsense_Mutation p.Q7* 0.57 TCGA-CV-7415-01 19 54823872 54823872 G C LILRA5 Missense_Mutation p.S8C 0.11 deleterious(0) probably_damaging(0.942) TCGA-CV-7415-01 19 59011756 59011756 G T SLC27A5 Missense_Mutation p.A473E 0.17 tolerated(0.06) possibly_damaging(0.679) TCGA-CV-7415-01 19 9048921 9048921 C T MUC16 Missense_Mutation p.E10904K 0.16 possibly_damaging(0.504) TCGA-CV-7415-01 1 114184803 114184803 C T MAGI3 Missense_Mutation p.S544L 0.26 tolerated(0.26) benign(0.001) TCGA-CV-7415-01 1 120296002 120296002 C A HMGCS2 Missense_Mutation p.A399S 0.27 tolerated(0.9) possibly_damaging(0.785) TCGA-CV-7415-01 1 12855677 12855677 C G PRAMEF1 Silent p.L319L 0.14 TCGA-CV-7415-01 1 152058810 152058810 C T TCHHL1 Missense_Mutation p.E450K 0.08 deleterious(0.04) possibly_damaging(0.835) TCGA-CV-7415-01 1 159857775 159857775 G T CCDC19 Silent p.I148I 0.34 TCGA-CV-7415-01 1 169701064 169701064 G A SELE Silent p.S147S 0.35 TCGA-CV-7415-01 1 174606603 174606603 G A RABGAP1L Missense_Mutation p.E601K 0.21 deleterious(0) possibly_damaging(0.733) TCGA-CV-7415-01 1 186273956 186273956 C G PRG4 Missense_Mutation p.S167C 0.09 possibly_damaging(0.869) TCGA-CV-7415-01 1 193104562 193104562 G A CDC73 Missense_Mutation p.G117S 0.36 tolerated(1) benign(0.018) TCGA-CV-7415-01 1 197115445 197115445 G C ASPM Silent p.L41L 0.16 TCGA-CV-7415-01 1 248366902 248366902 T C OR2M3 Missense_Mutation p.F178S 0.17 deleterious(0.01) probably_damaging(0.929) TCGA-CV-7415-01 1 248487479 248487479 C G OR2M7 Missense_Mutation p.R131T 0.03 deleterious(0) possibly_damaging(0.821) TCGA-CV-7415-01 1 7870006 7870006 G T PER3 Silent p.S431S 0.24 TCGA-CV-7415-01 20 33578239 33578258 CTCCACGTGAACATCACAGC - MYH7B Intron 0.35 TCGA-CV-7415-01 20 33872130 33872130 T G EIF6 Intron 0.33 TCGA-CV-7415-01 21 10951405 10951405 A T TPTE Missense_Mutation p.L103I 0.24 tolerated(0.45) benign(0.047) TCGA-CV-7415-01 21 18981460 18981460 C A BTG3 Translation_Start_Site p.M1? 0.49 deleterious(0) probably_damaging(0.998) TCGA-CV-7415-01 21 43161792 43161803 GTGTGCTAGACT - RIPK4 In_Frame_Del p.E517_R521delinsG 0.43 TCGA-CV-7415-01 21 45833913 45833913 C G TRPM2 Silent p.L1034L 0.11 TCGA-CV-7415-01 2 103120006 103120006 G A SLC9A4 Missense_Mutation p.G274R 0.14 deleterious(0) probably_damaging(1) TCGA-CV-7415-01 2 179594065 179594065 A G TTN Missense_Mutation p.V6273A 0.14 TCGA-CV-7415-01 2 183790481 183790481 C G NCKAP1 Silent p.L1118L 0.08 TCGA-CV-7415-01 2 185800736 185800736 C A ZNF804A Missense_Mutation p.Q205K 0.28 tolerated(0.05) benign(0.012) TCGA-CV-7415-01 2 189898825 189898825 C T COL5A2 Missense_Mutation p.V1491I 0.12 unknown(0) TCGA-CV-7415-01 2 220402017 220402017 C T ASIC4 Silent p.L567L 0.31 TCGA-CV-7415-01 3 136573702 136573702 C G SLC35G2 Missense_Mutation p.L134V 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-7415-01 3 168838959 168838959 G A MECOM Silent p.R216R 0.66 TCGA-CV-7415-01 3 183017859 183017859 G A MCF2L2 Silent p.I413I 0.14 TCGA-CV-7415-01 4 104579371 104579371 C T TACR3 Splice_Site p.X246_splice 0.24 TCGA-CV-7415-01 4 134072862 134072862 G A PCDH10 Missense_Mutation p.G523S 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7415-01 4 163032465 163032465 A G FSTL5 Silent p.Y28Y 0.10 TCGA-CV-7415-01 4 4426946 4426946 C T STX18 Missense_Mutation p.E236K 0.12 deleterious(0) benign(0.234) TCGA-CV-7415-01 4 73957032 73957032 G C ANKRD17 Missense_Mutation p.H2105D 0.08 benign(0) TCGA-CV-7415-01 5 127595501 127595501 C T FBN2 Silent p.E2795E 0.14 TCGA-CV-7415-01 5 140856119 140856119 G A PCDHGC3 Missense_Mutation p.E146K 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7415-01 5 176011455 176011455 G A CDHR2 Missense_Mutation p.E725K 0.10 deleterious(0) possibly_damaging(0.791) TCGA-CV-7415-01 5 176829658 176829658 G A F12 Missense_Mutation p.P525S 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7415-01 5 177649532 177649532 C T PHYKPL Missense_Mutation p.G251S 0.20 deleterious(0) probably_damaging(0.972) TCGA-CV-7415-01 6 52662432 52662432 C T GSTA1 Missense_Mutation p.E31K 0.11 deleterious(0.01) benign(0.01) TCGA-CV-7415-01 7 107752371 107752371 G A LAMB4 Silent p.I71I 0.12 TCGA-CV-7415-01 7 108204640 108204640 T A THAP5 Missense_Mutation p.I395L 0.38 tolerated(0.2) benign(0.001) TCGA-CV-7415-01 7 99489778 99489778 G A TRIM4 3'UTR 0.19 TCGA-CV-7415-01 8 110448632 110448632 G T PKHD1L1 Nonsense_Mutation p.E1191* 0.38 TCGA-CV-7415-01 8 141566084 141566084 C T AGO2 Missense_Mutation p.V394I 0.11 tolerated(0.38) benign(0.009) TCGA-CV-7415-01 8 144804461 144804461 C A MAPK15 3'UTR 0.15 TCGA-CV-7415-01 8 77895656 77895657 - A PEX2 Frame_Shift_Ins p.M253Ifs*8 0.32 TCGA-CV-7415-01 9 123852644 123852644 G C CNTRL Silent p.L103L 0.10 TCGA-CV-7415-01 9 15920346 15920346 C T CCDC171 Missense_Mutation p.H1227Y 0.27 deleterious(0.04) benign(0.097) TCGA-CV-7415-01 9 79321541 79321541 A G PRUNE2 Silent p.Y1883Y 0.53 TCGA-CV-7415-01 9 82334979 82334979 C T TLE4 Missense_Mutation p.R537C 0.15 deleterious(0) probably_damaging(0.996) TCGA-CV-7415-01 X 122767908 122767908 T C THOC2 Missense_Mutation p.I678V 0.18 tolerated(0.08) benign(0.023) TCGA-CV-7415-01 X 133700419 133700419 T C PLAC1 Missense_Mutation p.I98M 0.78 tolerated(0.64) benign(0.019) TCGA-CV-7415-01 X 54497839 54497839 G A FGD1 Missense_Mutation p.P130L 0.21 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-CV-7415-01 X 78426986 78426986 C A GPR174 Missense_Mutation p.T161N 0.35 tolerated(0.49) benign(0.231) TCGA-CV-7415-01 X 90690579 90690579 G A PABPC5 Translation_Start_Site p.M1? 0.62 tolerated_low_confidence(0.11) benign(0.019) TCGA-CV-7416-01 10 105812854 105812854 C T COL17A1 Missense_Mutation p.R625Q 0.40 unknown(0) TCGA-CV-7416-01 10 127786990 127786990 C A ADAM12 Missense_Mutation p.V334F 0.37 deleterious(0.03) probably_damaging(0.931) TCGA-CV-7416-01 10 30317939 30317939 C A KIAA1462 Missense_Mutation p.A380S 0.07 tolerated(0.12) possibly_damaging(0.487) TCGA-CV-7416-01 10 5951214 5951214 C T FBXO18 Missense_Mutation p.A377V 0.34 tolerated(0.51) benign(0.027) TCGA-CV-7416-01 11 20404742 20404742 C G HTATIP2 Silent p.L274L 0.40 TCGA-CV-7416-01 11 5461808 5461808 G C OR51I1 Missense_Mutation p.Q313E 0.17 tolerated(0.27) benign(0.006) TCGA-CV-7416-01 11 55890111 55890111 C T OR8H3 Missense_Mutation p.T88I 0.19 deleterious(0.02) benign(0.077) TCGA-CV-7416-01 11 61018663 61018663 G T PGA5 Missense_Mutation p.E359D 0.19 tolerated(0.46) benign(0.004) TCGA-CV-7416-01 12 122079507 122079507 C G ORAI1 Missense_Mutation p.H290Q 0.23 tolerated(0.3) benign(0.069) TCGA-CV-7416-01 12 1995395 1995405 GATATTAATGA - CACNA2D4 Frame_Shift_Del p.F326Yfs*5 0.21 TCGA-CV-7416-01 12 247432 247432 G A IQSEC3 Splice_Site p.X302_splice 0.09 TCGA-CV-7416-01 12 55523868 55523868 G T OR9K2 Missense_Mutation p.A106S 0.20 deleterious(0.01) possibly_damaging(0.564) TCGA-CV-7416-01 12 71148349 71148349 C T PTPRR Intron 0.16 TCGA-CV-7416-01 13 42761205 42761205 A C DGKH Missense_Mutation p.K520T 0.22 deleterious(0.01) benign(0.171) TCGA-CV-7416-01 14 102676240 102676240 G A WDR20 3'UTR 0.16 TCGA-CV-7416-01 14 106109804 106109804 C T IGHG2 Silent p.K239K 0.10 TCGA-CV-7416-01 14 61442681 61442696 TTCTTTGCTACTGGAA - TRMT5 Frame_Shift_Del p.I314Kfs*24 0.10 TCGA-CV-7416-01 14 80164200 80164200 A C NRXN3 Missense_Mutation p.M909L 0.13 tolerated(0.27) benign(0) TCGA-CV-7416-01 15 28517376 28517376 G A HERC2 Silent p.S356S 0.10 TCGA-CV-7416-01 15 43330042 43330042 G A UBR1 Missense_Mutation p.R651C 0.18 deleterious(0) probably_damaging(0.996) TCGA-CV-7416-01 15 68624774 68624774 C T ITGA11 Missense_Mutation p.D490N 0.40 tolerated(0.24) benign(0.066) TCGA-CV-7416-01 15 74610933 74610933 G A CCDC33 Intron 0.35 TCGA-CV-7416-01 15 76496314 76496314 G A C15orf27 Silent p.P418P 0.26 TCGA-CV-7416-01 15 81598782 81598782 C T IL16 Missense_Mutation p.T1234M 0.05 deleterious(0.05) benign(0.381) TCGA-CV-7416-01 15 93016181 93016181 A G C15orf32 Splice_Site p.X125_splice 0.22 TCGA-CV-7416-01 16 57992329 57992329 C A CNGB1 Silent p.G274G 0.27 TCGA-CV-7416-01 16 70712271 70712271 C T MTSS1L Missense_Mutation p.D170N 0.21 deleterious(0) possibly_damaging(0.906) TCGA-CV-7416-01 16 75512907 75512907 C T CHST6 Missense_Mutation p.E274K 0.08 deleterious(0) probably_damaging(0.968) TCGA-CV-7416-01 16 76513352 76513352 G A CNTNAP4 Missense_Mutation p.R527K 0.16 tolerated(0.55) benign(0.003) TCGA-CV-7416-01 17 27849481 27849481 C T TAOK1 Nonsense_Mutation p.R698* 0.19 TCGA-CV-7416-01 17 2995956 2995966 TTGTCCAGGGC - OR1D2 Frame_Shift_Del p.A109Pfs*9 0.27 TCGA-CV-7416-01 17 38855898 38855898 C T KRT24 Missense_Mutation p.G387R 0.33 tolerated(0.53) possibly_damaging(0.715) TCGA-CV-7416-01 17 72322500 72322500 C T KIF19 Silent p.S4S 0.17 TCGA-CV-7416-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.58 tolerated(0.11) benign(0.308) TCGA-CV-7416-01 17 78073373 78073373 G A CCDC40 Silent p.Q1076Q 0.21 TCGA-CV-7416-01 19 18888281 18888281 G A CRTC1 3'UTR 0.32 TCGA-CV-7416-01 19 19231608 19231608 G A TMEM161A Silent p.L384L 0.15 TCGA-CV-7416-01 19 21607093 21607093 C A ZNF493 Silent p.P544P 0.25 TCGA-CV-7416-01 19 22836160 22836161 - A ZNF492 5'UTR 0.14 TCGA-CV-7416-01 19 38948883 38948883 C T RYR1 Silent p.V706V 0.32 TCGA-CV-7416-01 19 41086523 41086527 GGATC - SHKBP1 Frame_Shift_Del p.W205Cfs*48 0.16 TCGA-CV-7416-01 19 47984035 47984035 A G KPTN Missense_Mutation p.L194P 0.19 deleterious(0) probably_damaging(0.969) TCGA-CV-7416-01 19 49134221 49134221 G A DBP Missense_Mutation p.S284L 0.27 deleterious(0) benign(0.109) TCGA-CV-7416-01 19 52722988 52722988 G A PPP2R1A Silent p.V391V 0.33 TCGA-CV-7416-01 19 53473566 53473566 T - ZNF702P RNA 0.20 TCGA-CV-7416-01 19 56952582 56952582 C A ZNF667 Silent p.R594R 0.34 TCGA-CV-7416-01 19 57324982 57324982 C T PEG3 3'UTR 0.70 TCGA-CV-7416-01 19 58639326 58639326 C T ZNF329 Silent p.Q515Q 0.30 TCGA-CV-7416-01 1 10699678 10699678 C T CASZ1 Missense_Mutation p.R1534H 0.42 deleterious(0.02) probably_damaging(1) TCGA-CV-7416-01 1 160062266 160062266 C T IGSF8 Missense_Mutation p.R511Q 0.21 tolerated(0.11) probably_damaging(0.986) TCGA-CV-7416-01 1 161071851 161071851 T C PFDN2 Missense_Mutation p.N92S 0.20 tolerated(0.67) benign(0.01) TCGA-CV-7416-01 1 17682852 17682852 G A PADI4 Missense_Mutation p.G486S 0.12 deleterious(0) probably_damaging(0.997) TCGA-CV-7416-01 1 19487581 19487581 G A UBR4 Nonsense_Mutation p.Q1746* 0.11 TCGA-CV-7416-01 1 204085788 204085788 C T SOX13 Missense_Mutation p.A191V 0.07 deleterious(0.02) probably_damaging(0.91) TCGA-CV-7416-01 1 39341347 39341347 T G GJA9 Silent p.R142R 0.33 TCGA-CV-7416-01 1 71477850 71477850 C A PTGER3 Intron 0.08 TCGA-CV-7416-01 1 76269464 76269464 C T MSH4 Missense_Mutation p.S98L 0.11 tolerated_low_confidence(0.82) benign(0.001) TCGA-CV-7416-01 20 35580031 35580032 - ATC SAMHD1 In_Frame_Ins p.D5dup 0.14 TCGA-CV-7416-01 21 46899995 46899995 G A COL18A1 Silent p.G621G 0.06 TCGA-CV-7416-01 22 17670900 17670900 C T CECR1 Missense_Mutation p.A302T 0.22 tolerated(0.57) benign(0.008) TCGA-CV-7416-01 22 19789706 19789706 C T GNB1L Missense_Mutation p.G184S 0.26 deleterious(0) probably_damaging(0.994) TCGA-CV-7416-01 2 162273105 162273105 C T TBR1 Nonsense_Mutation p.Q62* 0.30 TCGA-CV-7416-01 2 175431842 175431842 G A WIPF1 Missense_Mutation p.T471M 0.29 tolerated(0.17) benign(0.015) TCGA-CV-7416-01 2 211018847 211018847 C A KANSL1L Missense_Mutation p.D154Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-CV-7416-01 2 219000421 219000421 C T CXCR2 Silent p.T299T 0.13 TCGA-CV-7416-01 2 224743419 224743419 C T WDFY1 Missense_Mutation p.C401Y 0.18 tolerated_low_confidence(0.15) benign(0.002) TCGA-CV-7416-01 2 227945173 227945173 C G COL4A4 Missense_Mutation p.D597H 0.20 probably_damaging(0.953) TCGA-CV-7416-01 2 27317367 27317367 C T KHK Missense_Mutation p.R78C 0.26 deleterious(0) possibly_damaging(0.762) TCGA-CV-7416-01 2 48066041 48066041 C T FBXO11 Missense_Mutation p.V182I 0.07 deleterious(0.01) benign(0.355) TCGA-CV-7416-01 2 86279995 86279995 G A POLR1A Silent p.T779T 0.38 TCGA-CV-7416-01 3 108117636 108117636 C A MYH15 Nonsense_Mutation p.E1681* 0.05 TCGA-CV-7416-01 3 122647874 122647874 C T SEMA5B Missense_Mutation p.R223H 0.21 deleterious(0.05) probably_damaging(0.944) TCGA-CV-7416-01 3 36779850 36779850 C T DCLK3 Missense_Mutation p.E101K 0.35 deleterious(0.03) benign(0.007) TCGA-CV-7416-01 3 36779895 36779895 C G DCLK3 Missense_Mutation p.D86H 0.33 deleterious(0) benign(0.095) TCGA-CV-7416-01 3 38050888 38050888 T C PLCD1 Missense_Mutation p.D515G 0.53 deleterious(0.03) possibly_damaging(0.709) TCGA-CV-7416-01 3 50402370 50402370 C T CACNA2D2 Silent p.Q1087Q 0.24 TCGA-CV-7416-01 4 100543978 100543978 G A MTTP Silent p.P886P 0.29 TCGA-CV-7416-01 4 144141614 144141614 G A USP38 3'UTR 0.18 TCGA-CV-7416-01 5 1032273 1032273 C T NKD2 Missense_Mutation p.P50S 0.09 tolerated(0.36) possibly_damaging(0.568) TCGA-CV-7416-01 5 33937016 33937016 G A RXFP3 Silent p.P57P 0.09 TCGA-CV-7416-01 5 68716051 68716051 G A MARVELD2 Missense_Mutation p.R280Q 0.22 deleterious(0.03) possibly_damaging(0.453) TCGA-CV-7416-01 6 38084407 38084407 G C ZFAND3 Missense_Mutation p.E141Q 0.29 tolerated(0.21) benign(0.03) TCGA-CV-7416-01 6 43267656 43267656 G C SLC22A7 Missense_Mutation p.E227Q 0.29 tolerated(0.35) benign(0.371) TCGA-CV-7416-01 7 128497288 128497288 G A FLNC Missense_Mutation p.V2560M 0.18 tolerated(0.19) benign(0.329) TCGA-CV-7416-01 7 151879181 151879181 G C KMT2C Missense_Mutation p.P1922A 0.21 benign(0.129) TCGA-CV-7416-01 7 26233291 26233291 C T HNRNPA2B1 Missense_Mutation p.G261S 0.26 tolerated(0.23) benign(0.001) TCGA-CV-7416-01 7 70254942 70254942 G A AUTS2 Missense_Mutation p.G914S 0.16 tolerated(1) benign(0.002) TCGA-CV-7416-01 8 110441662 110441662 C T PKHD1L1 Silent p.L1032L 0.33 TCGA-CV-7416-01 9 135553693 135553693 G A GTF3C4 Silent p.P229P 0.57 TCGA-CV-7416-01 X 104463741 104463741 C T TEX13A Missense_Mutation p.D379N 0.12 tolerated(0.1) probably_damaging(0.945) TCGA-CV-7416-01 X 140995293 140995293 A T MAGEC1 Silent p.G701G 0.30 TCGA-CV-7416-01 X 24745918 24745918 C G POLA1 Silent p.V511V 0.13 TCGA-CV-7416-01 X 48629340 48629340 T A GLOD5 Intron 0.18 TCGA-CV-7416-01 X 64196325 64196325 C T ZC4H2 5'UTR 0.33 TCGA-CV-7416-01 X 68749788 68749788 C T FAM155B Missense_Mutation p.R470W 0.12 deleterious(0.04) possibly_damaging(0.736) TCGA-CV-7416-01 X 79960224 79960224 T A BRWD3 Nonsense_Mutation p.K892* 0.03 TCGA-CV-7416-01 X 80001189 80001189 C T BRWD3 Missense_Mutation p.R157H 0.93 deleterious(0.01) benign(0.032) TCGA-CV-7416-01 X 82763808 82763808 C T POU3F4 Missense_Mutation p.A159V 0.08 tolerated(0.36) benign(0.027) TCGA-CV-7418-01 10 105174033 105174033 T C PDCD11 Silent p.I439I 0.28 TCGA-CV-7418-01 10 106982948 106982948 G A SORCS3 Missense_Mutation p.V937M 0.47 deleterious(0) possibly_damaging(0.832) TCGA-CV-7418-01 10 118713583 118713583 C A KIAA1598 Missense_Mutation p.V136F 0.42 tolerated(0.75) benign(0.153) TCGA-CV-7418-01 10 119044328 119044328 A G PDZD8 Missense_Mutation p.V639A 0.10 tolerated(0.76) benign(0.005) TCGA-CV-7418-01 10 134648830 134648830 T C TTC40 Missense_Mutation p.D2241G 0.19 tolerated(0.08) benign(0.359) TCGA-CV-7418-01 10 74234891 74234891 C T MICU1 Silent p.Q300Q 0.29 TCGA-CV-7418-01 10 97779477 97779477 C G CC2D2B Missense_Mutation p.Q226E 0.21 tolerated(0.23) benign(0.234) TCGA-CV-7418-01 10 98292908 98292908 G C TM9SF3 Missense_Mutation p.L409V 0.35 deleterious(0) probably_damaging(0.999) TCGA-CV-7418-01 10 98744407 98744407 G A C10orf12 Missense_Mutation p.S1087N 0.45 tolerated(1) benign(0.004) TCGA-CV-7418-01 11 122756473 122756473 C T C11orf63 5'UTR 0.25 TCGA-CV-7418-01 11 122930647 122930647 C T HSPA8 Silent p.E218E 0.14 TCGA-CV-7418-01 11 17409554 17409554 G A KCNJ11 Missense_Mutation p.R29C 0.32 deleterious(0) possibly_damaging(0.549) TCGA-CV-7418-01 11 1862048 1862048 G A TNNI2 Splice_Site p.X63_splice 0.39 TCGA-CV-7418-01 11 197593 197593 G A ODF3 Missense_Mutation p.A48T 0.44 deleterious(0) possibly_damaging(0.906) TCGA-CV-7418-01 11 63325937 63325937 G A HRASLS2 Missense_Mutation p.P105L 0.20 tolerated(0.67) benign(0.012) TCGA-CV-7418-01 11 65144112 65144112 T A SLC25A45 Silent p.A211A 0.61 TCGA-CV-7418-01 11 66083244 66083244 C T CD248 Missense_Mutation p.E419K 0.35 tolerated(0.09) benign(0.171) TCGA-CV-7418-01 11 66083246 66083246 C T CD248 Missense_Mutation p.R418K 0.35 tolerated(1) benign(0.022) TCGA-CV-7418-01 11 66083267 66083267 C G CD248 Missense_Mutation p.R411T 0.37 tolerated(0.45) benign(0.005) TCGA-CV-7418-01 11 66083379 66083379 C T CD248 Missense_Mutation p.D374N 0.43 deleterious(0.04) benign(0.118) TCGA-CV-7418-01 11 66083463 66083463 C G CD248 Missense_Mutation p.D346H 0.48 deleterious(0) probably_damaging(1) TCGA-CV-7418-01 11 66083527 66083527 C T CD248 Silent p.Q324Q 0.38 TCGA-CV-7418-01 11 66083548 66083548 C G CD248 Missense_Mutation p.Q317H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-7418-01 11 66083586 66083586 C A CD248 Missense_Mutation p.D305Y 0.33 deleterious(0) probably_damaging(0.937) TCGA-CV-7418-01 11 66083748 66083748 C A CD248 Missense_Mutation p.D251Y 0.45 deleterious(0.01) probably_damaging(0.937) TCGA-CV-7418-01 11 66083845 66083845 C T CD248 Silent p.E218E 0.54 TCGA-CV-7418-01 11 66083847 66083847 C T CD248 Missense_Mutation p.E218K 0.53 deleterious(0.03) benign(0.002) TCGA-CV-7418-01 11 66083928 66083928 C G CD248 Missense_Mutation p.E191Q 0.32 tolerated(0.26) benign(0.01) TCGA-CV-7418-01 11 66084045 66084045 C T CD248 Missense_Mutation p.D152N 0.53 deleterious(0) probably_damaging(0.999) TCGA-CV-7418-01 11 66084084 66084084 C T CD248 Missense_Mutation p.E139K 0.56 tolerated(0.17) possibly_damaging(0.615) TCGA-CV-7418-01 11 71249400 71249400 G T KRTAP5-8 Missense_Mutation p.C100F 0.13 deleterious(0) unknown(0) TCGA-CV-7418-01 11 87016978 87016978 A G TMEM135 Missense_Mutation p.I233M 0.40 deleterious(0.03) benign(0.025) TCGA-CV-7418-01 12 109937603 109937603 C A UBE3B Missense_Mutation p.S369Y 0.23 deleterious(0.03) benign(0.176) TCGA-CV-7418-01 12 113906037 113906037 C T LHX5 Silent p.K190K 0.40 TCGA-CV-7418-01 12 117615346 117615346 C T FBXO21 Missense_Mutation p.D191N 0.46 tolerated(0.06) benign(0.03) TCGA-CV-7418-01 12 117968797 117968797 G A KSR2 Missense_Mutation p.T584M 0.34 tolerated(0.12) benign(0.148) TCGA-CV-7418-01 12 3921420 3921420 G A PARP11 Nonsense_Mutation p.R296* 0.32 TCGA-CV-7418-01 12 4627336 4627336 A T C12orf4 Missense_Mutation p.S307R 0.44 tolerated(0.16) benign(0.004) TCGA-CV-7418-01 12 54744278 54744278 G A COPZ1 Missense_Mutation p.E169K 0.06 deleterious(0) benign(0.045) TCGA-CV-7418-01 12 64202512 64202512 G C TMEM5 Missense_Mutation p.Q324H 0.30 tolerated(0.1) benign(0.044) TCGA-CV-7418-01 12 72057278 72057278 C T ZFC3H1 Missense_Mutation p.S38N 0.35 tolerated_low_confidence(0.52) benign(0.213) TCGA-CV-7418-01 12 80752051 80752051 G T OTOGL Missense_Mutation p.V2006F 0.26 deleterious(0.01) benign(0.003) TCGA-CV-7418-01 13 31711647 31711647 T C HSPH1 Silent p.T795T 0.51 TCGA-CV-7418-01 13 49796405 49796405 G A MLNR Silent p.P377P 0.66 TCGA-CV-7418-01 14 20837659 20837659 G A TEP1 Silent p.T2500T 0.06 TCGA-CV-7418-01 14 23450641 23450641 C A AJUBA Nonsense_Mutation p.E279* 0.32 TCGA-CV-7418-01 14 23502633 23502633 T C PSMB5 Missense_Mutation p.K150R 0.32 tolerated(0.5) benign(0.316) TCGA-CV-7418-01 14 23535181 23535181 C T ACIN1 Missense_Mutation p.V826I 0.29 benign(0.009) TCGA-CV-7418-01 14 31626071 31626071 T G HECTD1 Missense_Mutation p.N636T 0.40 tolerated(0.25) possibly_damaging(0.528) TCGA-CV-7418-01 14 50100984 50100984 G T DNAAF2 Missense_Mutation p.A295D 0.29 deleterious(0) probably_damaging(0.99) TCGA-CV-7418-01 14 50100985 50100985 C T DNAAF2 Missense_Mutation p.A295T 0.29 deleterious(0.05) probably_damaging(0.966) TCGA-CV-7418-01 14 58036671 58036671 C A SLC35F4 Missense_Mutation p.A357S 0.45 deleterious(0) benign(0.437) TCGA-CV-7418-01 14 60574583 60574583 C T PCNXL4 Intron 0.31 TCGA-CV-7418-01 14 61180764 61180764 C T SIX4 Silent p.Q569Q 0.41 TCGA-CV-7418-01 14 69704290 69704290 A G EXD2 Splice_Site p.X431_splice 0.38 TCGA-CV-7418-01 14 81965994 81965994 G T SEL1L Missense_Mutation p.L264M 0.18 tolerated(0.32) possibly_damaging(0.62) TCGA-CV-7418-01 14 81965995 81965995 A T SEL1L Missense_Mutation p.F263L 0.18 tolerated(0.06) benign(0.302) TCGA-CV-7418-01 15 24921325 24921325 A C NPAP1 Missense_Mutation p.N104T 0.07 deleterious(0.01) probably_damaging(0.958) TCGA-CV-7418-01 15 28389228 28389228 G A HERC2 Missense_Mutation p.A3765V 0.33 benign(0.082) TCGA-CV-7418-01 15 43102902 43102902 G A TTBK2 Silent p.H244H 0.38 TCGA-CV-7418-01 15 43579612 43579612 C - TGM7 Frame_Shift_Del p.G244Afs*31 0.29 TCGA-CV-7418-01 15 45814465 45814465 C G SLC30A4 Missense_Mutation p.D30H 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7418-01 15 73044806 73044806 C G ADPGK Missense_Mutation p.R456T 0.27 deleterious(0) possibly_damaging(0.617) TCGA-CV-7418-01 15 75942185 75942185 A G SNX33 Missense_Mutation p.S248G 0.06 deleterious(0) benign(0.205) TCGA-CV-7418-01 15 78923490 78923490 C T CHRNB4 Missense_Mutation p.R96H 0.26 deleterious(0.02) benign(0.011) TCGA-CV-7418-01 15 91479661 91479661 C T UNC45A Missense_Mutation p.R133W 0.45 deleterious(0.01) benign(0.004) TCGA-CV-7418-01 16 27765493 27765493 G A KIAA0556 Splice_Site p.X1185_splice 0.53 TCGA-CV-7418-01 16 66975087 66975087 C T CES2 Missense_Mutation p.R357W 0.06 deleterious(0) probably_damaging(0.996) TCGA-CV-7418-01 16 67234109 67234109 G A ELMO3 Silent p.E139E 0.50 TCGA-CV-7418-01 17 2290453 2290453 G C MNT Silent p.T497T 0.62 TCGA-CV-7418-01 17 26882020 26882020 G C PIGS Missense_Mutation p.T414R 0.43 tolerated(0.07) benign(0.001) TCGA-CV-7418-01 17 28537590 28537590 C T SLC6A4 Silent p.R464R 0.19 TCGA-CV-7418-01 17 35896099 35896100 - A SYNRG Frame_Shift_Ins p.M1216Ifs*10 0.11 TCGA-CV-7418-01 17 37347836 37347836 T C CACNB1 Missense_Mutation p.E61G 0.32 deleterious(0) possibly_damaging(0.527) TCGA-CV-7418-01 17 37899470 37899470 G T GRB7 Silent p.V190V 0.10 TCGA-CV-7418-01 17 39994252 39994252 C T KLHL10 Missense_Mutation p.A23V 0.34 tolerated(0.34) benign(0.008) TCGA-CV-7418-01 17 4098291 4098291 C T ANKFY1 Missense_Mutation p.A494T 0.34 tolerated(0.1) probably_damaging(0.946) TCGA-CV-7418-01 17 65186378 65186378 T G HELZ Silent p.S217S 0.19 TCGA-CV-7418-01 17 72929559 72929559 C T OTOP2 Silent p.I536I 0.15 TCGA-CV-7418-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.68 deleterious(0) probably_damaging(0.994) TCGA-CV-7418-01 17 80790003 80790003 C G ZNF750 Missense_Mutation p.D110H 0.14 deleterious(0.01) probably_damaging(0.943) TCGA-CV-7418-01 17 8383589 8383589 C A MYH10 Missense_Mutation p.Q1812H 0.32 possibly_damaging(0.754) TCGA-CV-7418-01 18 22806653 22806653 C A ZNF521 Missense_Mutation p.C410F 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-7418-01 18 25589801 25589801 C A CDH2 Silent p.R194R 0.37 TCGA-CV-7418-01 18 30350122 30350122 C T KLHL14 Missense_Mutation p.A145T 0.23 deleterious(0.01) benign(0.2) TCGA-CV-7418-01 18 47799236 47799236 T C MBD1 Silent p.K558K 0.05 TCGA-CV-7418-01 19 10446518 10446518 C T ICAM3 Missense_Mutation p.E160K 0.25 deleterious(0.01) probably_damaging(0.983) TCGA-CV-7418-01 19 15291931 15291931 C T NOTCH3 Silent p.S945S 0.54 TCGA-CV-7418-01 19 15587132 15587132 A T PGLYRP2 Missense_Mutation p.S117T 0.39 tolerated(0.26) probably_damaging(0.998) TCGA-CV-7418-01 19 19035702 19035702 T A DDX49 Missense_Mutation p.I314N 0.45 deleterious(0) probably_damaging(0.997) TCGA-CV-7418-01 19 19369367 19369367 C T HAPLN4 Missense_Mutation p.R261H 0.44 tolerated(0.14) benign(0.096) TCGA-CV-7418-01 19 20728176 20728176 A T ZNF737 Missense_Mutation p.I278N 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7418-01 19 38262306 38262306 C T ZNF573 Missense_Mutation p.A34T 0.21 tolerated(0.07) possibly_damaging(0.685) TCGA-CV-7418-01 19 4432045 4432045 C T CHAF1A Nonsense_Mutation p.Q682* 0.30 TCGA-CV-7418-01 19 48946565 48946565 G A GRIN2D Missense_Mutation p.G1128S 0.44 tolerated_low_confidence(0.18) unknown(0) TCGA-CV-7418-01 19 49206855 49206855 G C FUT2 Missense_Mutation p.K214N 0.37 tolerated(0.05) probably_damaging(0.952) TCGA-CV-7418-01 19 49469858 49469861 ACTC - FTL Frame_Shift_Del p.H133Sfs*2 0.28 TCGA-CV-7418-01 19 52149660 52149660 G A SIGLEC14 Missense_Mutation p.R91C 0.37 tolerated(0.05) probably_damaging(0.914) TCGA-CV-7418-01 19 55805723 55805723 A C BRSK1 Silent p.A212A 0.29 TCGA-CV-7418-01 19 9361989 9361989 T G OR7E24 Silent p.G90G 0.45 TCGA-CV-7418-01 1 142713447 142713447 T C RP11-417J8.6 RNA 0.13 TCGA-CV-7418-01 1 144828684 144828684 A G NBPF9 Missense_Mutation p.Q651R 0.02 tolerated(0.06) benign(0.304) TCGA-CV-7418-01 1 152681865 152681865 C A LCE4A 3'UTR 0.28 TCGA-CV-7418-01 1 16046240 16046240 C T PLEKHM2 Silent p.Y159Y 0.57 TCGA-CV-7418-01 1 197091324 197091324 G T ASPM Missense_Mutation p.H1236N 0.21 deleterious(0) probably_damaging(0.968) TCGA-CV-7418-01 1 203786208 203786208 C G ZC3H11A Missense_Mutation p.Q4E 0.14 deleterious(0) possibly_damaging(0.757) TCGA-CV-7418-01 1 205210771 205210771 G T TMCC2 Missense_Mutation p.D116Y 0.13 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CV-7418-01 1 236205526 236205526 G A NID1 Silent p.G273G 0.27 TCGA-CV-7418-01 1 248367254 248367254 G A OR2M3 Silent p.K295K 0.26 TCGA-CV-7418-01 1 248458696 248458696 C T OR2T12 Missense_Mutation p.S62N 0.09 deleterious(0.02) benign(0.167) TCGA-CV-7418-01 1 248569576 248569576 T A OR2T1 Missense_Mutation p.V94D 0.12 deleterious(0) possibly_damaging(0.541) TCGA-CV-7418-01 1 24978993 24978993 C G SRRM1 Missense_Mutation p.S265C 0.43 unknown(0) TCGA-CV-7418-01 1 29474918 29474918 C A SRSF4 3'UTR 0.41 TCGA-CV-7418-01 1 29474919 29474919 C A SRSF4 3'UTR 0.41 TCGA-CV-7418-01 1 32140630 32140630 G C COL16A1 Missense_Mutation p.P946R 0.37 unknown(0) TCGA-CV-7418-01 1 32671343 32671343 G A IQCC Missense_Mutation p.G21S 0.25 tolerated_low_confidence(0.43) benign(0.38) TCGA-CV-7418-01 1 60392390 60392390 G A CYP2J2 Missense_Mutation p.A10V 0.31 tolerated(0.1) unknown(0) TCGA-CV-7418-01 20 10620273 10620273 G A JAG1 Missense_Mutation p.T1177M 0.66 tolerated(0.16) benign(0.044) TCGA-CV-7418-01 20 11903683 11903683 T A BTBD3 Missense_Mutation p.L313Q 0.49 deleterious(0) probably_damaging(0.989) TCGA-CV-7418-01 20 23545618 23545618 G C CST9L Silent p.L137L 0.53 TCGA-CV-7418-01 20 34090746 34090746 C A CEP250 Silent p.R1517R 0.47 TCGA-CV-7418-01 21 34099218 34099218 C T SYNJ1 Missense_Mutation p.E36K 0.37 deleterious_low_confidence(0.03) benign(0.054) TCGA-CV-7418-01 21 43166824 43166824 G A RIPK4 Missense_Mutation p.L261F 0.35 deleterious(0) probably_damaging(1) TCGA-CV-7418-01 21 47841931 47841931 C G PCNT Missense_Mutation p.P2358A 0.32 benign(0.005) TCGA-CV-7418-01 22 36701124 36701124 G T MYH9 Silent p.S728S 0.31 TCGA-CV-7418-01 22 42482286 42482286 T C NDUFA6 Silent p.V122V 0.30 TCGA-CV-7418-01 2 135988170 135988170 C G ZRANB3 Missense_Mutation p.E623Q 0.37 tolerated(0.22) benign(0.023) TCGA-CV-7418-01 2 137814502 137814502 C A THSD7B Missense_Mutation p.P218T 0.29 deleterious(0) probably_damaging(0.954) TCGA-CV-7418-01 2 149847689 149847689 G T KIF5C Missense_Mutation p.A628S 0.24 tolerated(1) benign(0.004) TCGA-CV-7418-01 2 163374317 163374317 C A KCNH7 Missense_Mutation p.R272I 0.08 deleterious(0) probably_damaging(0.964) TCGA-CV-7418-01 2 169989168 169989168 A G LRP2 Silent p.D4548D 0.31 TCGA-CV-7418-01 2 179534354 179534354 G A TTN Missense_Mutation p.A11812V 0.34 TCGA-CV-7418-01 2 185731223 185731223 A G ZNF804A Missense_Mutation p.D80G 0.17 deleterious(0.01) benign(0.391) TCGA-CV-7418-01 2 190428622 190428622 G A SLC40A1 Missense_Mutation p.R364C 0.14 deleterious(0) probably_damaging(0.967) TCGA-CV-7418-01 2 20818936 20818936 G T HS1BP3 Silent p.P330P 0.35 TCGA-CV-7418-01 2 225368470 225368470 C G CUL3 Missense_Mutation p.D426H 0.64 deleterious(0) probably_damaging(1) TCGA-CV-7418-01 2 241418985 241418985 G C ANKMY1 3'UTR 0.45 TCGA-CV-7418-01 2 63086416 63086417 - GACTCAGA EHBP1 Frame_Shift_Ins p.E288Tfs*36 0.18 TCGA-CV-7418-01 2 90060716 90060716 T G IGKV6D-21 Missense_Mutation p.I21M 0.17 deleterious(0) probably_damaging(0.948) TCGA-CV-7418-01 3 101283915 101283915 T G TRMT10C Missense_Mutation p.F97C 0.19 deleterious(0) possibly_damaging(0.497) TCGA-CV-7418-01 3 125172710 125172710 T C SNX4 Silent p.L378L 0.31 TCGA-CV-7418-01 3 130283910 130283910 T C COL6A6 Missense_Mutation p.F245S 0.34 tolerated(0.06) possibly_damaging(0.896) TCGA-CV-7418-01 3 136708366 136708366 G C IL20RB Missense_Mutation p.E164Q 0.23 tolerated(0.62) benign(0.034) TCGA-CV-7418-01 3 139092255 139092255 C A COPB2 Splice_Site p.X299_splice 0.23 TCGA-CV-7418-01 3 153840472 153840472 C G ARHGEF26 Missense_Mutation p.P231A 0.41 tolerated(0.09) benign(0.437) TCGA-CV-7418-01 3 155551699 155551699 T C SLC33A1 Silent p.K365K 0.31 TCGA-CV-7418-01 3 167747722 167747722 G C GOLIM4 Missense_Mutation p.L427V 0.22 deleterious(0.04) possibly_damaging(0.872) TCGA-CV-7418-01 3 169511390 169511390 C T LRRC34 3'UTR 0.13 TCGA-CV-7418-01 3 183369021 183369021 A G KLHL24 Missense_Mutation p.I293V 0.20 tolerated(0.42) benign(0.02) TCGA-CV-7418-01 3 42917176 42917176 G T CYP8B1 Missense_Mutation p.H45N 0.52 deleterious(0.03) possibly_damaging(0.893) TCGA-CV-7418-01 3 48694603 48694603 G A CELSR3 Silent p.D1309D 0.39 TCGA-CV-7418-01 3 99569270 99569270 A C FILIP1L Missense_Mutation p.V417G 0.49 deleterious(0) probably_damaging(0.994) TCGA-CV-7418-01 4 107165855 107165855 C G TBCK Missense_Mutation p.G333A 0.58 deleterious(0) possibly_damaging(0.576) TCGA-CV-7418-01 4 144361302 144361303 - T GAB1 Frame_Shift_Ins p.P452Sfs*30 0.35 TCGA-CV-7418-01 4 152201007 152201007 C T PRSS48 Missense_Mutation p.R38C 0.47 deleterious(0) benign(0.024) TCGA-CV-7418-01 4 155510666 155510666 G A FGA Missense_Mutation p.R35C 0.68 deleterious(0) possibly_damaging(0.689) TCGA-CV-7418-01 5 112173676 112173680 CTATG TTAT APC Frame_Shift_Del p.G797Vfs*23 0.17 TCGA-CV-7418-01 5 128324299 128324299 C T SLC27A6 Missense_Mutation p.P231L 0.49 deleterious(0) probably_damaging(0.998) TCGA-CV-7418-01 5 137426396 137426396 C T WNT8A Silent p.S230S 0.40 TCGA-CV-7418-01 5 139941607 139941607 G T APBB3 Intron 0.21 TCGA-CV-7418-01 5 140175998 140175998 C A PCDHA2 Missense_Mutation p.D483E 0.32 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CV-7418-01 5 140182672 140182672 G T PCDHA3 Missense_Mutation p.E630D 0.28 deleterious_low_confidence(0) benign(0.421) TCGA-CV-7418-01 5 140750142 140750142 T G PCDHGB3 Missense_Mutation p.L61V 0.04 tolerated(0.13) probably_damaging(0.955) TCGA-CV-7418-01 5 151202317 151202317 A C GLRA1 Missense_Mutation p.F431V 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7418-01 5 19571938 19571938 G T CDH18 Missense_Mutation p.L335M 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7418-01 5 5461761 5461761 A G KIAA0947 Missense_Mutation p.I772V 0.30 tolerated(1) benign(0.002) TCGA-CV-7418-01 6 112493962 112493962 G C LAMA4 Missense_Mutation p.R468G 0.11 tolerated(0.08) possibly_damaging(0.858) TCGA-CV-7418-01 6 121768632 121768632 G T GJA1 Missense_Mutation p.M213I 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-7418-01 6 31473459 31473459 C A MICB Missense_Mutation p.L46I 0.59 tolerated(0.26) probably_damaging(0.986) TCGA-CV-7418-01 6 31974427 31974427 G A AL645922.1 Intron 0.44 TCGA-CV-7418-01 6 42603184 42603184 G A UBR2 Missense_Mutation p.G525E 0.59 deleterious(0) probably_damaging(0.997) TCGA-CV-7418-01 6 47682615 47682615 G C GPR115 Missense_Mutation p.R545T 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7418-01 6 56716396 56716396 C A RP11-472M19.2 Intron 0.40 TCGA-CV-7418-01 6 75851809 75851809 G A COL12A1 Silent p.V1632V 0.44 TCGA-CV-7418-01 6 83905997 83905997 G T RWDD2A 3'UTR 0.35 TCGA-CV-7418-01 7 106781395 106781395 A T PRKAR2B Missense_Mutation p.D195V 0.34 deleterious(0) probably_damaging(0.983) TCGA-CV-7418-01 7 129043233 129043233 G C AHCYL2 Missense_Mutation p.G311A 0.36 deleterious(0) probably_damaging(0.997) TCGA-CV-7418-01 7 139727186 139727186 G T PARP12 Silent p.S506S 0.24 TCGA-CV-7418-01 7 157178351 157178351 G A DNAJB6 Intron 0.27 TCGA-CV-7418-01 7 44801094 44801094 T C ZMIZ2 Silent p.D429D 0.06 TCGA-CV-7418-01 7 45697403 45697403 T A ADCY1 Missense_Mutation p.L409Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-CV-7418-01 7 96747113 96747113 C T ACN9 Silent p.D26D 0.21 TCGA-CV-7418-01 7 99091989 99091989 A G ZNF394 Silent p.N283N 0.08 TCGA-CV-7418-01 8 100880545 100880545 G A VPS13B Silent p.P3773P 0.24 TCGA-CV-7418-01 8 105459661 105459661 T C DPYS Missense_Mutation p.K165R 0.24 deleterious(0.03) benign(0.023) TCGA-CV-7418-01 8 110487466 110487466 A G PKHD1L1 Missense_Mutation p.I2909V 0.17 deleterious(0.02) probably_damaging(0.941) TCGA-CV-7418-01 8 113585824 113585824 G A CSMD3 Silent p.R1316R 0.25 TCGA-CV-7418-01 8 113988125 113988125 C G CSMD3 Missense_Mutation p.R428T 0.27 tolerated(0.14) benign(0.01) TCGA-CV-7418-01 8 126061386 126061386 G A KIAA0196 Silent p.T747T 0.25 TCGA-CV-7418-01 8 133141630 133141630 A T KCNQ3 Missense_Mutation p.L833H 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7418-01 8 145151332 145151332 T C CYC1 Silent p.S182S 0.31 TCGA-CV-7418-01 8 27657230 27657230 T G ESCO2 Missense_Mutation p.L557R 0.35 deleterious(0) probably_damaging(0.972) TCGA-CV-7418-01 8 39022614 39022614 G T ADAM32 Missense_Mutation p.K244N 0.39 deleterious(0) probably_damaging(0.997) TCGA-CV-7418-01 8 40554847 40554847 A G ZMAT4 Missense_Mutation p.V89A 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-CV-7418-01 8 70517085 70517085 C G SULF1 Nonsense_Mutation p.S432* 0.37 TCGA-CV-7418-01 9 123797114 123797114 G C C5 Missense_Mutation p.S184C 0.32 deleterious(0) probably_damaging(0.992) TCGA-CV-7418-01 9 130911792 130911792 C T LCN2 5'UTR 0.32 TCGA-CV-7418-01 9 21029378 21029378 G A PTPLAD2 Missense_Mutation p.L20F 0.23 deleterious(0) probably_damaging(0.937) TCGA-CV-7418-01 9 35107864 35107864 C T FAM214B Nonsense_Mutation p.W136* 0.27 TCGA-CV-7418-01 9 71532554 71532554 C T PIP5K1B Missense_Mutation p.P288S 0.75 tolerated(1) benign(0) TCGA-CV-7418-01 9 99694538 99694538 G C NUTM2G Missense_Mutation p.G184A 0.14 tolerated(0.29) possibly_damaging(0.519) TCGA-CV-7418-01 9 99694662 99694662 C G NUTM2G Silent p.P225P 0.14 TCGA-CV-7418-01 X 110490693 110490698 TCCTCC - CAPN6 In_Frame_Del p.E548_E549del 0.55 TCGA-CV-7418-01 X 48780923 48780923 G T OTUD5 Silent p.S527S 0.73 TCGA-CV-7418-01 X 71426165 71426165 A C ERCC6L Missense_Mutation p.F818V 0.70 tolerated(0.51) benign(0) TCGA-CV-7418-01 X 78011180 78011180 T G LPAR4 Missense_Mutation p.Y272D 0.70 deleterious(0) probably_damaging(1) TCGA-CV-7418-01 Y 6948772 6948773 - C TBL1Y Frame_Shift_Ins p.A321Rfs*3 0.44 TCGA-CV-7421-01 10 23633575 23633575 G T C10orf67 Silent p.T44T 0.38 TCGA-CV-7421-01 10 72636950 72636950 A G SGPL1 Splice_Site p.X523_splice 0.09 TCGA-CV-7421-01 11 121384941 121384941 C T SORL1 Silent p.I374I 0.07 TCGA-CV-7421-01 11 122733102 122733102 C G CRTAM Intron 0.34 TCGA-CV-7421-01 11 122733161 122733161 C A CRTAM Intron 0.26 TCGA-CV-7421-01 11 1270883 1270883 C G MUC5B Missense_Mutation p.T4258S 0.05 benign(0.292) TCGA-CV-7421-01 11 15098881 15098881 C T CALCB Missense_Mutation p.R92W 0.28 tolerated(0.07) benign(0.391) TCGA-CV-7421-01 11 40136993 40136993 G A LRRC4C Missense_Mutation p.H284Y 0.39 tolerated(0.16) possibly_damaging(0.626) TCGA-CV-7421-01 11 47464319 47464319 G C RAPSN Silent p.V193V 0.30 TCGA-CV-7421-01 12 53516948 53516948 C T SOAT2 Silent p.F440F 0.26 TCGA-CV-7421-01 12 57351084 57351084 G T RDH16 Silent p.R55R 0.24 TCGA-CV-7421-01 12 6646508 6646508 C T GAPDH Silent p.P159P 0.28 TCGA-CV-7421-01 12 95694511 95694511 G C VEZT 3'UTR 0.22 TCGA-CV-7421-01 13 39618272 39618272 C G NHLRC3 Missense_Mutation p.A211G 0.47 tolerated(1) benign(0.009) TCGA-CV-7421-01 14 102502847 102502847 C A DYNC1H1 Silent p.P3592P 0.16 TCGA-CV-7421-01 14 20585923 20585923 C G OR4K17 Missense_Mutation p.Q120E 0.37 deleterious(0.02) benign(0.062) TCGA-CV-7421-01 14 20692287 20692287 G A OR11H6 Missense_Mutation p.R140Q 0.10 deleterious(0.03) benign(0.133) TCGA-CV-7421-01 14 88892892 88892892 C G SPATA7 Missense_Mutation p.S230C 0.21 deleterious(0) probably_damaging(0.951) TCGA-CV-7421-01 15 28511050 28511050 C T HERC2 Missense_Mutation p.A557T 0.09 possibly_damaging(0.511) TCGA-CV-7421-01 15 83710628 83710628 A G BTBD1 Silent p.S238S 0.32 TCGA-CV-7421-01 16 31500299 31500299 C G SLC5A2 Missense_Mutation p.S460C 0.33 deleterious(0) probably_damaging(0.956) TCGA-CV-7421-01 16 50063658 50063658 C G CNEP1R1 Silent p.V57V 0.09 TCGA-CV-7421-01 17 38508322 38508322 G A RARA Silent p.T210T 0.50 TCGA-CV-7421-01 17 56280505 56280505 G A EPX Missense_Mutation p.R591Q 0.48 tolerated(0.66) benign(0.003) TCGA-CV-7421-01 17 67020425 67020425 G T ABCA9 Silent p.A737A 0.25 TCGA-CV-7421-01 17 7578549 7578549 G A TP53 Silent p.S127S 0.48 TCGA-CV-7421-01 17 7578550 7578550 G A TP53 Missense_Mutation p.S127F 0.50 deleterious(0) probably_damaging(1) TCGA-CV-7421-01 18 13885087 13885087 A G MC2R Missense_Mutation p.M144T 0.49 tolerated(0.28) benign(0.002) TCGA-CV-7421-01 18 73000485 73000485 C T TSHZ1 Silent p.L996L 0.33 TCGA-CV-7421-01 19 19338829 19338829 G C NCAN Silent p.G800G 0.07 TCGA-CV-7421-01 19 54395868 54395868 G A PRKCG Silent p.S264S 0.41 TCGA-CV-7421-01 19 5783265 5783265 C A PRR22 Silent p.L331L 0.08 TCGA-CV-7421-01 1 109465042 109465042 A G GPSM2 Missense_Mutation p.I482V 0.43 tolerated(0.45) benign(0) TCGA-CV-7421-01 1 152732431 152732431 G A KPRP Missense_Mutation p.E123K 0.32 deleterious(0.03) possibly_damaging(0.452) TCGA-CV-7421-01 1 174671345 174671345 A T RABGAP1L Missense_Mutation p.K707M 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-7421-01 1 182909570 182909570 C T SHCBP1L Missense_Mutation p.E222K 0.11 deleterious(0.04) possibly_damaging(0.648) TCGA-CV-7421-01 1 248224417 248224417 C T OR2L3 Missense_Mutation p.T145I 0.08 tolerated(0.49) benign(0.001) TCGA-CV-7421-01 1 43124905 43124905 C G PPIH Missense_Mutation p.F46L 0.19 tolerated(0.85) benign(0.113) TCGA-CV-7421-01 20 21328869 21328869 A C XRN2 Missense_Mutation p.D584A 0.09 tolerated(0.17) benign(0.01) TCGA-CV-7421-01 20 30154066 30154066 G A HM13 Silent p.A334A 0.08 TCGA-CV-7421-01 20 35312834 35312834 G A NDRG3 Missense_Mutation p.P122L 0.16 tolerated(0.32) benign(0.063) TCGA-CV-7421-01 20 6031559 6031559 C T LRRN4 Silent p.T242T 0.32 TCGA-CV-7421-01 21 27840862 27840862 C T CYYR1 Silent p.Q141Q 0.10 TCGA-CV-7421-01 21 30380219 30380219 A T RWDD2B Missense_Mutation p.H196Q 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7421-01 21 34923613 34923613 T A SON Silent p.P692P 0.22 TCGA-CV-7421-01 21 47704324 47704324 T C MCM3AP Missense_Mutation p.R293G 0.32 deleterious(0) probably_damaging(0.937) TCGA-CV-7421-01 22 19393354 19393354 C T HIRA Missense_Mutation p.V118M 0.13 tolerated(0.05) probably_damaging(0.948) TCGA-CV-7421-01 22 23090384 23090384 C T IGLV3-16 Missense_Mutation p.S108L 0.41 tolerated(0.16) benign(0.344) TCGA-CV-7421-01 2 11347878 11347878 C T ROCK2 Silent p.L841L 0.15 TCGA-CV-7421-01 2 152426612 152426612 A C NEB Missense_Mutation p.Y5805D 0.18 probably_damaging(1) TCGA-CV-7421-01 2 16734259 16734259 G C FAM49A Missense_Mutation p.T306R 0.16 deleterious(0) probably_damaging(0.995) TCGA-CV-7421-01 2 170099508 170099508 C T LRP2 Missense_Mutation p.G1209S 0.13 probably_damaging(1) TCGA-CV-7421-01 2 37347201 37347201 G A EIF2AK2 Silent p.G383G 0.16 TCGA-CV-7421-01 2 44204310 44204310 T C LRPPRC Missense_Mutation p.N192S 0.46 deleterious(0.02) possibly_damaging(0.852) TCGA-CV-7421-01 2 74699750 74699750 A G MRPL53 Missense_Mutation p.V13A 0.09 deleterious(0.04) probably_damaging(0.997) TCGA-CV-7421-01 2 74754072 74754072 T C AUP1 Missense_Mutation p.R398G 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-7421-01 2 86255166 86255166 G A POLR1A Missense_Mutation p.A1635V 0.23 tolerated(0.17) benign(0.008) TCGA-CV-7421-01 3 138374244 138374244 T A PIK3CB Missense_Mutation p.D1067V 0.36 deleterious(0) probably_damaging(0.992) TCGA-CV-7421-01 3 140406956 140406956 G T TRIM42 Missense_Mutation p.D478Y 0.33 deleterious(0) possibly_damaging(0.898) TCGA-CV-7421-01 4 119952308 119952308 C G SYNPO2 Missense_Mutation p.P793R 0.06 deleterious(0.01) possibly_damaging(0.847) TCGA-CV-7421-01 4 120243207 120243207 C T FABP2 Silent p.K17K 0.17 TCGA-CV-7421-01 4 39310409 39310409 C G RFC1 Missense_Mutation p.E578Q 0.15 tolerated(0.29) benign(0.011) TCGA-CV-7421-01 4 87692491 87692491 G A PTPN13 Silent p.G1662G 0.50 TCGA-CV-7421-01 5 1422042 1422042 G C SLC6A3 Silent p.V247V 0.07 TCGA-CV-7421-01 5 14508431 14508431 G C TRIO Missense_Mutation p.R3065T 0.06 unknown(0) TCGA-CV-7421-01 5 74892047 74892047 G A POLK Missense_Mutation p.G510D 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7421-01 6 107956480 107956480 A G SOBP Missense_Mutation p.D811G 0.25 tolerated(0.1) benign(0.074) TCGA-CV-7421-01 6 134210564 134210564 A G TCF21 Missense_Mutation p.E10G 0.09 deleterious_low_confidence(0) benign(0.037) TCGA-CV-7421-01 6 159403578 159403579 - TC RSPH3 Frame_Shift_Ins p.N354Rfs*32 0.15 TCGA-CV-7421-01 6 33744932 33744933 - TC LEMD2 Frame_Shift_Ins p.M414Rfs*3 0.13 TCGA-CV-7421-01 6 34826614 34826614 C T UHRF1BP1 Silent p.R827R 0.22 TCGA-CV-7421-01 7 30113748 30113748 G T PLEKHA8 Silent p.A454A 0.44 TCGA-CV-7421-01 7 99703604 99703604 C T AP4M1 Nonsense_Mutation p.R318* 0.08 TCGA-CV-7421-01 8 110460576 110460576 T - PKHD1L1 Frame_Shift_Del p.V1994Dfs*24 0.19 TCGA-CV-7421-01 8 139164397 139164397 G T FAM135B Missense_Mutation p.P774H 0.08 deleterious(0) probably_damaging(0.996) TCGA-CV-7421-01 8 144658293 144658293 G A NAPRT1 Silent p.V354V 0.22 TCGA-CV-7421-01 8 42587134 42587134 C G CHRNB3 Silent p.V228V 0.33 TCGA-CV-7421-01 8 42587173 42587173 C A CHRNB3 Silent p.I241I 0.35 TCGA-CV-7421-01 9 114911525 114911525 T A SUSD1 Silent p.T124T 0.15 TCGA-CV-7421-01 9 123239729 123239729 C T CDK5RAP2 Splice_Site p.X543_splice 0.18 TCGA-CV-7421-01 X 153247560 153247560 G C TMEM187 Missense_Mutation p.G16A 0.54 tolerated(0.53) benign(0.003) TCGA-CV-7421-01 X 153628946 153628946 C G RPL10 Missense_Mutation p.F157L 0.07 tolerated(0.07) benign(0.259) TCGA-CV-7421-01 X 20043130 20043130 G T MAP7D2 Missense_Mutation p.Q451K 0.54 tolerated(0.1) unknown(0) TCGA-CV-7421-01 X 39937101 39937101 C G BCOR Missense_Mutation p.D28H 0.63 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7422-01 10 100195167 100195167 C G HPS1 Missense_Mutation p.G87A 0.08 tolerated(0.05) probably_damaging(0.923) TCGA-CV-7422-01 10 101090475 101090475 C G CNNM1 Nonsense_Mutation p.S444* 0.15 TCGA-CV-7422-01 10 103989006 103989006 G T ELOVL3 Missense_Mutation p.Q270H 0.06 tolerated(0.06) benign(0.027) TCGA-CV-7422-01 10 105967445 105967445 C A WDR96 Missense_Mutation p.K291N 0.10 deleterious(0.03) benign(0.022) TCGA-CV-7422-01 10 16866954 16866954 G A CUBN 3'UTR 0.28 TCGA-CV-7422-01 10 17126316 17126316 T A CUBN Missense_Mutation p.H752L 0.09 deleterious(0.02) benign(0.365) TCGA-CV-7422-01 10 25138659 25138659 C G PRTFDC1 3'UTR 0.22 TCGA-CV-7422-01 10 30315990 30315990 C G KIAA1462 Silent p.G1029G 0.22 TCGA-CV-7422-01 10 44052206 44052206 C A ZNF239 Missense_Mutation p.S441I 0.14 deleterious(0) probably_damaging(1) TCGA-CV-7422-01 10 5958323 5958323 T C FBXO18 Silent p.F615F 0.05 TCGA-CV-7422-01 10 60461890 60461890 C A BICC1 Silent p.A98A 0.15 TCGA-CV-7422-01 10 85992510 85992510 G T LRIT1 Missense_Mutation p.P349T 0.07 tolerated(0.78) benign(0.003) TCGA-CV-7422-01 10 90707105 90707105 C G ACTA2 Silent p.V56V 0.22 TCGA-CV-7422-01 11 122848470 122848470 C T BSX Missense_Mutation p.A197T 0.09 tolerated(0.36) benign(0.001) TCGA-CV-7422-01 11 128354827 128354827 C G ETS1 Silent p.S251S 0.33 TCGA-CV-7422-01 11 14989343 14989343 T G CALCA 3'Flank 0.11 TCGA-CV-7422-01 11 50003965 50003965 T G OR4C12 Missense_Mutation p.T25P 0.10 deleterious_low_confidence(0.01) benign(0.116) TCGA-CV-7422-01 11 5809578 5809578 G T OR52N1 Missense_Mutation p.L157I 0.20 tolerated(0.18) possibly_damaging(0.881) TCGA-CV-7422-01 11 66191816 66191816 G A NPAS4 Silent p.L485L 0.38 TCGA-CV-7422-01 11 66638327 66638327 C T PC Missense_Mutation p.A224T 0.13 deleterious(0) probably_damaging(0.992) TCGA-CV-7422-01 11 6891559 6891559 C G OR10A2 Missense_Mutation p.L192V 0.16 tolerated(0.15) benign(0.118) TCGA-CV-7422-01 11 70224267 70224267 C T PPFIA1 Silent p.S1172S 0.08 TCGA-CV-7422-01 11 77066805 77066805 T C PAK1 Missense_Mutation p.N227S 0.34 tolerated(0.57) benign(0.02) TCGA-CV-7422-01 11 93911630 93911630 G C PANX1 Missense_Mutation p.L139F 0.16 deleterious(0) probably_damaging(0.973) TCGA-CV-7422-01 12 112681213 112681213 G A HECTD4 Silent p.V1488V 0.25 TCGA-CV-7422-01 12 113346624 113346624 C T OAS1 Missense_Mutation p.A155V 0.10 tolerated(0.32) benign(0.129) TCGA-CV-7422-01 12 18847863 18847863 G T PLCZ1 Missense_Mutation p.P481Q 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-CV-7422-01 12 49443617 49443617 G A KMT2D Nonsense_Mutation p.R1252* 0.19 TCGA-CV-7422-01 12 52938396 52938396 G A KRT71 Missense_Mutation p.R498W 0.21 tolerated_low_confidence(0.14) benign(0) TCGA-CV-7422-01 12 56604300 56604300 G A RNF41 Missense_Mutation p.S48F 0.23 deleterious(0.04) benign(0.188) TCGA-CV-7422-01 12 57389441 57389441 G A GPR182 Missense_Mutation p.D150N 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-CV-7422-01 12 57619422 57619422 C A NXPH4 Silent p.P273P 0.27 TCGA-CV-7422-01 12 6566666 6566666 G C TAPBPL Missense_Mutation p.L220F 0.14 tolerated(0.43) possibly_damaging(0.596) TCGA-CV-7422-01 12 66539718 66539718 T C TMBIM4 Missense_Mutation p.I123V 0.18 tolerated(0.75) benign(0.008) TCGA-CV-7422-01 12 72020216 72020216 C A ZFC3H1 Nonsense_Mutation p.E1381* 0.22 TCGA-CV-7422-01 12 78400890 78400890 C G NAV3 Silent p.S524S 0.15 TCGA-CV-7422-01 12 90010659 90010659 C T ATP2B1 Missense_Mutation p.E663K 0.15 tolerated(0.07) benign(0.075) TCGA-CV-7422-01 13 73350163 73350163 A C DIS3 Missense_Mutation p.I241R 0.27 deleterious(0) possibly_damaging(0.836) TCGA-CV-7422-01 14 21058750 21058750 A C RNASE11 Splice_Site p.X44_splice 0.22 TCGA-CV-7422-01 14 28734296 28734296 G T BNIP3P1 RNA 0.32 TCGA-CV-7422-01 14 47120968 47120968 G A RPL10L 5'UTR 0.09 TCGA-CV-7422-01 14 95562901 95562901 A - DICER1 Frame_Shift_Del p.F1452Lfs*2 0.10 TCGA-CV-7422-01 15 22332523 22332523 G T RP11-69H14.6 RNA 0.08 TCGA-CV-7422-01 15 22990179 22990179 G C CYFIP1 Silent p.L933L 0.09 TCGA-CV-7422-01 15 25470243 25470243 C A SNORD115-27 3'Flank 0.34 TCGA-CV-7422-01 15 28459109 28459109 C T HERC2 Missense_Mutation p.E2189K 0.13 benign(0.003) TCGA-CV-7422-01 15 34040341 34040341 G T RYR3 Silent p.A2672A 0.12 TCGA-CV-7422-01 15 39544747 39544747 T G C15orf54 Silent p.R137R 0.12 TCGA-CV-7422-01 15 85401044 85401044 G A ALPK3 Silent p.Q1227Q 0.28 TCGA-CV-7422-01 16 31419085 31419085 A T ITGAD Splice_Site p.X287_splice 0.17 TCGA-CV-7422-01 16 56865770 56865770 G T NUP93 Nonsense_Mutation p.E368* 0.08 TCGA-CV-7422-01 17 10399767 10399767 C A MYH1 Nonsense_Mutation p.E1586* 0.19 TCGA-CV-7422-01 17 34954655 34954655 G A DHRS11 Missense_Mutation p.V141M 0.11 deleterious(0) possibly_damaging(0.884) TCGA-CV-7422-01 17 39577792 39577792 G A KRT37 Silent p.G356G 0.33 TCGA-CV-7422-01 17 43227248 43227248 G A HEXIM1 Missense_Mutation p.A231T 0.29 tolerated(0.29) benign(0.006) TCGA-CV-7422-01 17 45235606 45235606 G A CDC27 Silent p.F147F 0.12 TCGA-CV-7422-01 17 49710870 49710870 G C CA10 Missense_Mutation p.P311A 0.23 deleterious(0.05) probably_damaging(0.994) TCGA-CV-7422-01 17 66268877 66268877 A G SLC16A6 Silent p.T136T 0.14 TCGA-CV-7422-01 17 72368126 72368126 C A GPR142 Missense_Mutation p.A259D 0.11 deleterious(0.05) benign(0.367) TCGA-CV-7422-01 17 7579377 7579377 G A TP53 Nonsense_Mutation p.Q104* 0.23 TCGA-CV-7422-01 19 16060695 16060695 G A OR10H4 Missense_Mutation p.S293N 0.32 deleterious(0.01) possibly_damaging(0.852) TCGA-CV-7422-01 19 18632829 18632829 A G ELL Missense_Mutation p.S13P 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7422-01 19 36593683 36593683 G A WDR62 Missense_Mutation p.E1089K 0.12 tolerated(0.16) benign(0.018) TCGA-CV-7422-01 19 37310699 37310699 A G ZNF790 Missense_Mutation p.S183P 0.13 deleterious(0.05) benign(0) TCGA-CV-7422-01 19 37904514 37904514 G T ZNF569 Missense_Mutation p.T349K 0.09 deleterious(0) probably_damaging(0.995) TCGA-CV-7422-01 19 39292682 39292682 C T LGALS4 Missense_Mutation p.E259K 0.16 deleterious(0) probably_damaging(1) TCGA-CV-7422-01 19 40318983 40318983 G T DYRK1B Missense_Mutation p.A254D 0.17 deleterious(0.03) possibly_damaging(0.898) TCGA-CV-7422-01 19 47909780 47909780 G A MEIS3 Missense_Mutation p.S407L 0.11 tolerated_low_confidence(0.46) benign(0.008) TCGA-CV-7422-01 19 50826961 50826961 G A KCNC3 Missense_Mutation p.R417C 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7422-01 19 53015473 53015473 G A ZNF578 3'Flank 0.13 TCGA-CV-7422-01 19 54677887 54677887 G A MBOAT7 Missense_Mutation p.R424W 0.14 deleterious(0) probably_damaging(0.937) TCGA-CV-7422-01 19 57325822 57325822 G T PEG3 Missense_Mutation p.P1330T 0.27 deleterious(0.01) possibly_damaging(0.902) TCGA-CV-7422-01 19 9764328 9764328 A G ZNF562 Missense_Mutation p.V193A 0.10 tolerated(0.68) benign(0.004) TCGA-CV-7422-01 1 101186049 101186049 G C VCAM1 Missense_Mutation p.E28Q 0.07 deleterious(0.02) benign(0.144) TCGA-CV-7422-01 1 10132157 10132157 C A UBE4B Silent p.P32P 0.27 TCGA-CV-7422-01 1 111494331 111494331 C A LRIF1 Missense_Mutation p.R392I 0.11 deleterious(0) benign(0.071) TCGA-CV-7422-01 1 1236026 1236026 G A ACAP3 Missense_Mutation p.R129W 0.21 deleterious(0.01) probably_damaging(0.937) TCGA-CV-7422-01 1 154523418 154523418 T C UBE2Q1 Silent p.K411K 0.27 TCGA-CV-7422-01 1 154938440 154938440 G A SHC1 Missense_Mutation p.R457W 0.22 deleterious(0.03) benign(0.071) TCGA-CV-7422-01 1 158735880 158735880 A G OR6N1 Missense_Mutation p.V198A 0.09 deleterious(0.03) probably_damaging(0.99) TCGA-CV-7422-01 1 159842833 159842833 C T CCDC19 Missense_Mutation p.R493Q 0.07 deleterious(0) probably_damaging(1) TCGA-CV-7422-01 1 186909195 186909195 C T PLA2G4A Silent p.V334V 0.05 TCGA-CV-7422-01 1 220088985 220088985 G C SLC30A10 Missense_Mutation p.L422V 0.33 deleterious(0.05) benign(0.06) TCGA-CV-7422-01 1 23407936 23407936 C T KDM1A Intron 0.16 TCGA-CV-7422-01 1 245019248 245019248 G A HNRNPU Missense_Mutation p.R709C 0.05 deleterious(0.01) unknown(0) TCGA-CV-7422-01 1 27106228 27106228 C T ARID1A Nonsense_Mutation p.Q1947* 0.19 TCGA-CV-7422-01 1 38227731 38227731 C G EPHA10 Missense_Mutation p.E66Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-CV-7422-01 1 39854051 39854051 T A MACF1 Silent p.S3117S 0.11 TCGA-CV-7422-01 1 39854052 39854052 G T MACF1 Nonsense_Mutation p.E3118* 0.11 TCGA-CV-7422-01 1 57415426 57415426 C A C8B Splice_Site p.X223_splice 0.24 TCGA-CV-7422-01 1 6271129 6271129 C A RNF207 Missense_Mutation p.L354M 0.16 deleterious(0) probably_damaging(0.99) TCGA-CV-7422-01 1 91406244 91406244 C G ZNF644 Missense_Mutation p.E223Q 0.17 tolerated(0.2) benign(0.341) TCGA-CV-7422-01 20 17462541 17462541 G C PCSK2 Missense_Mutation p.K581N 0.15 tolerated(0.51) benign(0.049) TCGA-CV-7422-01 20 36975003 36975003 C T LBP Silent p.P28P 0.12 TCGA-CV-7422-01 20 51870578 51870578 C T TSHZ2 Missense_Mutation p.S194L 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-7422-01 20 5904039 5904039 C T CHGB Missense_Mutation p.R417C 0.08 tolerated(0.14) probably_damaging(0.91) TCGA-CV-7422-01 20 62551424 62551424 G A DNAJC5 Intron 0.06 TCGA-CV-7422-01 21 31986075 31986075 C A KRTAP6-1 Missense_Mutation p.G50V 0.14 unknown(0) TCGA-CV-7422-01 22 17071848 17071848 C A CCT8L2 Missense_Mutation p.E531D 0.23 deleterious(0.02) benign(0.01) TCGA-CV-7422-01 22 38165092 38165092 G A TRIOBP Silent p.Q2211Q 0.23 TCGA-CV-7422-01 2 109463283 109463283 G A CCDC138 Silent p.Q471Q 0.05 TCGA-CV-7422-01 2 136623718 136623718 G A MCM6 Missense_Mutation p.A304V 0.12 tolerated(0.29) benign(0.006) TCGA-CV-7422-01 2 179592514 179592514 T C TTN Silent p.L6597L 0.09 TCGA-CV-7422-01 2 21233595 21233595 G A APOB Missense_Mutation p.P2049S 0.07 probably_damaging(0.996) TCGA-CV-7422-01 2 219610493 219610493 C T TTLL4 Silent p.T622T 0.13 TCGA-CV-7422-01 2 232378246 232378246 T C LINC00471 RNA 0.09 TCGA-CV-7422-01 2 98411468 98411468 A C TMEM131 Nonsense_Mutation p.L1104* 0.32 TCGA-CV-7422-01 3 100962722 100962722 A G IMPG2 Missense_Mutation p.L818S 0.11 tolerated(0.11) benign(0.132) TCGA-CV-7422-01 3 108195321 108195321 C T MYH15 Missense_Mutation p.E406K 0.17 deleterious(0) probably_damaging(0.938) TCGA-CV-7422-01 3 121980531 121980531 G A CASR Missense_Mutation p.D217N 0.07 deleterious(0.02) benign(0.099) TCGA-CV-7422-01 3 125282600 125282600 C G OSBPL11 Missense_Mutation p.S319T 0.14 tolerated(0.31) benign(0.031) TCGA-CV-7422-01 3 133358856 133358856 G A TOPBP1 Missense_Mutation p.T727M 0.19 tolerated(0.28) benign(0.018) TCGA-CV-7422-01 3 142274981 142274981 T C ATR Missense_Mutation p.I693M 0.10 tolerated(0.11) benign(0.1) TCGA-CV-7422-01 3 154890356 154890356 C T MME Missense_Mutation p.A703V 0.10 deleterious(0.02) possibly_damaging(0.569) TCGA-CV-7422-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.32 deleterious(0.04) probably_damaging(0.96) TCGA-CV-7422-01 3 192516360 192516360 G A MB21D2 Nonsense_Mutation p.R431* 0.07 TCGA-CV-7422-01 3 32931948 32931948 G A TRIM71 Missense_Mutation p.V418M 0.07 deleterious(0.01) benign(0.31) TCGA-CV-7422-01 3 38739930 38739930 C T SCN10A Missense_Mutation p.R1594H 0.09 deleterious(0) probably_damaging(0.992) TCGA-CV-7422-01 3 88040986 88040986 C T HTR1F Nonsense_Mutation p.R363* 0.19 TCGA-CV-7422-01 4 187208888 187208888 G T F11 Nonsense_Mutation p.E543* 0.10 TCGA-CV-7422-01 4 187540153 187540154 - T FAT1 Nonsense_Mutation p.Y2529* 0.23 TCGA-CV-7422-01 4 2954030 2954030 T C NOP14 Missense_Mutation p.E281G 0.28 deleterious(0) probably_damaging(0.948) TCGA-CV-7422-01 4 30723146 30723146 C G PCDH7 Silent p.L34L 0.36 TCGA-CV-7422-01 4 72620734 72620734 G A GC Silent p.C394C 0.17 TCGA-CV-7422-01 5 139921779 139921779 C T ANKHD1 Missense_Mutation p.P2531L 0.15 possibly_damaging(0.713) TCGA-CV-7422-01 5 140256490 140256490 C T PCDHA12 Missense_Mutation p.S478L 0.10 deleterious_low_confidence(0.02) benign(0.358) TCGA-CV-7422-01 5 140745472 140745472 G C PCDHGA5 Missense_Mutation p.L525F 0.11 tolerated_low_confidence(1) benign(0.006) TCGA-CV-7422-01 5 140768196 140768196 G T PCDHGB4 Missense_Mutation p.V249L 0.13 deleterious(0.01) possibly_damaging(0.582) TCGA-CV-7422-01 5 167645811 167645811 C T TENM2 Missense_Mutation p.R1639C 0.15 deleterious(0) probably_damaging(0.985) TCGA-CV-7422-01 5 195405 195405 C T LRRC14B Silent p.F494F 0.26 TCGA-CV-7422-01 5 31532542 31532542 C G C5orf22 Missense_Mutation p.P15A 0.11 tolerated(0.19) benign(0.003) TCGA-CV-7422-01 5 71494067 71494067 G T MAP1B Missense_Mutation p.A1629S 0.06 possibly_damaging(0.888) TCGA-CV-7422-01 5 75906864 75906864 C T IQGAP2 Silent p.Y459Y 0.13 TCGA-CV-7422-01 6 116938023 116938023 A G RSPH4A Silent p.T79T 0.17 TCGA-CV-7422-01 6 129899533 129899533 A G ARHGAP18 3'UTR 0.33 TCGA-CV-7422-01 6 130762772 130762772 G C TMEM200A Missense_Mutation p.R402P 0.07 tolerated(0.34) probably_damaging(0.968) TCGA-CV-7422-01 6 152631904 152631904 T C SYNE1 Silent p.Q5605Q 0.41 TCGA-CV-7422-01 6 167708122 167708122 G T UNC93A Missense_Mutation p.G69W 0.07 tolerated(1) benign(0) TCGA-CV-7422-01 6 26271479 26271479 C A HIST1H3G Missense_Mutation p.G45V 0.12 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-CV-7422-01 6 26392973 26392973 G A BTN2A2 Silent p.L450L 0.08 TCGA-CV-7422-01 6 27798957 27798957 G T HIST1H4K 3'UTR 0.29 TCGA-CV-7422-01 6 83834483 83834483 T A DOPEY1 Nonsense_Mutation p.L467* 0.07 TCGA-CV-7422-01 7 110303762 110303762 G T IMMP2L Missense_Mutation p.L142M 0.26 tolerated(0.12) possibly_damaging(0.881) TCGA-CV-7422-01 7 122787224 122787224 C T SLC13A1 Silent p.E267E 0.13 TCGA-CV-7422-01 7 123600068 123600068 T A SPAM1 Intron 0.16 TCGA-CV-7422-01 7 57529218 57529218 C A ZNF716 Missense_Mutation p.L351I 0.17 deleterious(0.01) benign(0.142) TCGA-CV-7422-01 7 98256574 98256574 G A NPTX2 Missense_Mutation p.G329E 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7422-01 8 105521200 105521200 A G LRP12 Missense_Mutation p.I80T 0.07 deleterious(0) probably_damaging(0.998) TCGA-CV-7422-01 8 77766752 77766752 C G ZFHX4 Missense_Mutation p.P2532R 0.11 probably_damaging(0.997) TCGA-CV-7422-01 9 119770538 119770538 C T ASTN2 Missense_Mutation p.G424E 0.15 deleterious(0) unknown(0) TCGA-CV-7422-01 9 123201903 123201903 C T CDK5RAP2 Missense_Mutation p.G1166R 0.29 tolerated(0.09) benign(0.049) TCGA-CV-7422-01 9 21333736 21333736 G A KLHL9 Missense_Mutation p.R375W 0.31 tolerated(0.06) probably_damaging(0.945) TCGA-CV-7422-01 9 90500809 90500809 A C SPATA31E1 Silent p.V469V 0.09 TCGA-CV-7422-01 9 97346868 97346868 G C FBP2 Missense_Mutation p.I139M 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-7422-01 X 100403043 100403043 A T CENPI Missense_Mutation p.I663F 0.08 tolerated(0.07) benign(0.004) TCGA-CV-7422-01 X 107224122 107224122 G A TEX13B 3'UTR 0.28 TCGA-CV-7422-01 X 117815169 117815169 G C DOCK11 Missense_Mutation p.M1940I 0.25 tolerated(0.06) probably_damaging(0.993) TCGA-CV-7422-01 X 119672528 119672528 G T CUL4B Silent p.S631S 0.19 TCGA-CV-7422-01 X 122837338 122837338 C T THOC2 Missense_Mutation p.M80I 0.06 tolerated(0.75) benign(0) TCGA-CV-7422-01 X 13825851 13825851 G - GPM6B Frame_Shift_Del p.W34Gfs*24 0.08 TCGA-CV-7422-01 X 14871234 14871235 - T FANCB Frame_Shift_Ins p.I418Nfs*18 0.09 TCGA-CV-7422-01 X 150156302 150156302 C T HMGB3 Missense_Mutation p.A173V 0.05 tolerated(0.3) benign(0.056) TCGA-CV-7422-01 X 151560754 151560754 A G GABRA3 Intron 0.17 TCGA-CV-7422-01 X 17072947 17072947 G C REPS2 Missense_Mutation p.D330H 0.08 deleterious(0) possibly_damaging(0.746) TCGA-CV-7422-01 X 19039220 19039220 A G GPR64 Splice_Site p.X215_splice 0.05 TCGA-CV-7422-01 X 27998267 27998267 G C DCAF8L1 Missense_Mutation p.C395W 0.22 deleterious(0) probably_damaging(0.976) TCGA-CV-7422-01 X 48457988 48457988 G A WDR13 Missense_Mutation p.V136M 0.12 tolerated(0.09) benign(0.085) TCGA-CV-7422-01 X 51486870 51486870 C T GSPT2 Missense_Mutation p.R50C 0.20 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-CV-7422-01 X 54492144 54492144 G T FGD1 Silent p.I494I 0.07 TCGA-CV-7422-01 X 70347860 70347860 C G MED12 Silent p.T1033T 0.10 TCGA-CV-7422-01 X 91090649 91090649 T C PCDH11X Missense_Mutation p.L49S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-CV-7422-01 X 91090730 91090730 G A PCDH11X Missense_Mutation p.R76Q 0.13 deleterious(0.02) probably_damaging(0.948) TCGA-CV-7423-01 10 11973704 11973704 C G UPF2 Missense_Mutation p.E1208D 0.15 deleterious(0) possibly_damaging(0.678) TCGA-CV-7423-01 10 125804104 125804104 T C CHST15 Missense_Mutation p.K293R 0.32 tolerated(0.25) possibly_damaging(0.472) TCGA-CV-7423-01 10 43869149 43869149 C T FXYD4 5'UTR 0.12 TCGA-CV-7423-01 10 95718642 95718642 G A PIPSL RNA 0.17 TCGA-CV-7423-01 11 129748208 129748208 G A NFRKB Missense_Mutation p.R528W 0.48 deleterious(0) unknown(0) TCGA-CV-7423-01 11 22363157 22363157 C T SLC17A6 Missense_Mutation p.A57V 0.29 tolerated(0.61) benign(0.029) TCGA-CV-7423-01 11 2950579 2950579 C T PHLDA2 Missense_Mutation p.E6K 0.53 tolerated(1) possibly_damaging(0.476) TCGA-CV-7423-01 11 60170536 60170536 T C MS4A14 Splice_Site p.X156_splice 0.26 TCGA-CV-7423-01 11 62361790 62361790 C G MTA2 Missense_Mutation p.Q594H 0.14 deleterious_low_confidence(0.01) benign(0.365) TCGA-CV-7423-01 11 62505875 62505875 C G TTC9C 3'UTR 0.22 TCGA-CV-7423-01 11 6452604 6452604 A G HPX Missense_Mutation p.M409T 0.30 tolerated(0.42) benign(0) TCGA-CV-7423-01 11 67172899 67172899 G A TBC1D10C Silent p.P94P 0.25 TCGA-CV-7423-01 11 68822187 68822187 A G TPCN2 Splice_Site p.X59_splice 0.21 TCGA-CV-7423-01 11 8123160 8123160 C T TUB Silent p.C560C 0.65 TCGA-CV-7423-01 12 44130374 44130374 T A PUS7L Missense_Mutation p.E512V 0.17 tolerated(0.14) benign(0.405) TCGA-CV-7423-01 12 44148848 44148848 A G PUS7L Silent p.F67F 0.07 TCGA-CV-7423-01 12 53410391 53410391 G C EIF4B Missense_Mutation p.D50H 0.18 deleterious(0.01) possibly_damaging(0.861) TCGA-CV-7423-01 15 43545012 43545012 G C TGM5 Silent p.G269G 0.19 TCGA-CV-7423-01 15 57730854 57730854 C T CGNL1 Silent p.C219C 0.12 TCGA-CV-7423-01 15 59064131 59064131 C T FAM63B Silent p.F179F 0.32 TCGA-CV-7423-01 15 69003203 69003203 G A CORO2B Missense_Mutation p.A156T 0.38 tolerated(0.09) benign(0.275) TCGA-CV-7423-01 15 74426761 74426761 C T ISLR2 Missense_Mutation p.R556C 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7423-01 15 74740855 74740855 C T UBL7 Silent p.Q323Q 0.16 TCGA-CV-7423-01 16 2158547 2158547 G A PKD1 Silent p.P2207P 0.22 TCGA-CV-7423-01 16 29851704 29851704 A G MVP Missense_Mutation p.E372G 0.20 deleterious(0.04) benign(0.173) TCGA-CV-7423-01 16 49672378 49672378 G A ZNF423 Missense_Mutation p.R229C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-7423-01 17 39261988 39261988 C - KRTAP4-9 Frame_Shift_Del p.P117Lfs*145 0.33 TCGA-CV-7423-01 17 7365171 7365171 C A ZBTB4 3'UTR 0.50 TCGA-CV-7423-01 17 7574012 7574012 C A TP53 Nonsense_Mutation p.E339* 0.31 TCGA-CV-7423-01 17 79288276 79288276 G A TMEM105 5'UTR 0.20 TCGA-CV-7423-01 18 74154962 74154962 G A ZNF516 Missense_Mutation p.P17S 0.67 tolerated(0.05) probably_damaging(0.997) TCGA-CV-7423-01 19 11651894 11651894 G A CNN1 Missense_Mutation p.A23T 0.18 tolerated(0.15) possibly_damaging(0.703) TCGA-CV-7423-01 19 12951871 12951871 C T MAST1 Missense_Mutation p.S80F 0.09 deleterious(0.04) probably_damaging(0.979) TCGA-CV-7423-01 19 14752358 14752358 G T EMR3 Missense_Mutation p.A374E 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7423-01 19 17163638 17163638 C T HAUS8 Missense_Mutation p.R309Q 0.15 tolerated(0.83) benign(0.024) TCGA-CV-7423-01 19 45555410 45555410 G C CLASRP Missense_Mutation p.E61Q 0.07 deleterious(0) probably_damaging(0.99) TCGA-CV-7423-01 19 46094975 46094975 G A GPR4 Silent p.N50N 0.27 TCGA-CV-7423-01 19 52529005 52529005 C T ZNF614 5'UTR 0.17 TCGA-CV-7423-01 1 110456910 110456910 C T CSF1 Silent p.V23V 0.35 TCGA-CV-7423-01 1 114354936 114354936 C T RSBN1 Silent p.A33A 0.07 TCGA-CV-7423-01 1 150967079 150967079 G A ANXA9 Silent p.L293L 0.08 TCGA-CV-7423-01 1 17727771 17727771 G A PADI6 RNA 0.09 TCGA-CV-7423-01 1 190203579 190203579 C T BRINP3 Missense_Mutation p.G216D 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-7423-01 1 203148509 203148509 G A CHI3L1 3'UTR 0.10 TCGA-CV-7423-01 1 205589784 205589784 C T ELK4 Silent p.Q130Q 0.11 TCGA-CV-7423-01 1 207793408 207793408 C G CR1 Missense_Mutation p.S2417C 0.22 deleterious(0.01) possibly_damaging(0.689) TCGA-CV-7423-01 1 227169739 227169739 G A ADCK3 Missense_Mutation p.V248M 0.43 deleterious(0.04) benign(0.018) TCGA-CV-7423-01 1 236180536 236180536 C T NID1 Silent p.G722G 0.16 TCGA-CV-7423-01 1 240071198 240071198 C A CHRM3 Nonsense_Mutation p.Y149* 0.43 TCGA-CV-7423-01 1 240492666 240492666 C A FMN2 Silent p.P1445P 0.11 TCGA-CV-7423-01 1 32084929 32084931 GAG - HCRTR1 In_Frame_Del p.E46del 0.24 TCGA-CV-7423-01 1 39878082 39878082 T C KIAA0754 Silent p.C579C 0.11 TCGA-CV-7423-01 1 93167729 93167729 C T EVI5 Missense_Mutation p.S247N 0.20 deleterious(0) benign(0.155) TCGA-CV-7423-01 1 94496611 94496611 G A ABCA4 Silent p.G1398G 0.21 TCGA-CV-7423-01 20 13279972 13279972 C T ISM1 Silent p.L421L 0.19 TCGA-CV-7423-01 20 3146179 3146179 G - LZTS3 Frame_Shift_Del p.D430Tfs*6 0.28 TCGA-CV-7423-01 20 56137828 56137828 G A PCK1 Silent p.T161T 0.08 TCGA-CV-7423-01 20 62192986 62192986 G A HELZ2 Silent p.S2268S 0.39 TCGA-CV-7423-01 22 17619607 17619607 C A CECR5 Silent p.L256L 0.09 TCGA-CV-7423-01 22 38823814 38823814 C T KCNJ4 Silent p.P108P 0.39 TCGA-CV-7423-01 22 41752804 41752804 C G ZC3H7B Silent p.L891L 0.15 TCGA-CV-7423-01 22 45929029 45929029 G C FBLN1 Missense_Mutation p.G211R 0.15 deleterious(0) probably_damaging(0.979) TCGA-CV-7423-01 2 113942946 113942946 C T PSD4 Missense_Mutation p.S393F 0.18 tolerated_low_confidence(0.48) benign(0.044) TCGA-CV-7423-01 2 166152455 166152455 G A SCN2A Missense_Mutation p.R41H 0.34 tolerated(0.63) benign(0.005) TCGA-CV-7423-01 2 179451387 179451387 C T TTN Missense_Mutation p.R21414H 0.25 TCGA-CV-7423-01 2 179606565 179606565 C T TTN Missense_Mutation p.E3799K 0.25 TCGA-CV-7423-01 2 33012122 33012122 A G TTC27 Missense_Mutation p.Y635C 0.17 tolerated(0.06) probably_damaging(0.982) TCGA-CV-7423-01 2 55209669 55209670 - T RTN4 Frame_Shift_Ins p.D1114Efs*4 0.16 TCGA-CV-7423-01 3 109049479 109049479 T G DPPA4 Missense_Mutation p.T191P 0.54 deleterious(0.02) probably_damaging(0.964) TCGA-CV-7423-01 3 1424634 1424636 AGA - CNTN6 In_Frame_Del p.E727del 0.34 TCGA-CV-7423-01 3 164725717 164725717 A G SI Missense_Mutation p.Y1417H 0.10 tolerated(0.62) possibly_damaging(0.882) TCGA-CV-7423-01 3 185644425 185644425 C T TRA2B Missense_Mutation p.R45H 0.31 tolerated_low_confidence(0.66) unknown(0) TCGA-CV-7423-01 4 42551058 42551058 C T ATP8A1 Missense_Mutation p.E542K 0.15 tolerated(0.07) benign(0.389) TCGA-CV-7423-01 5 114499269 114499269 G C TRIM36 Missense_Mutation p.R82G 0.09 deleterious(0) probably_damaging(0.998) TCGA-CV-7423-01 5 140215474 140215474 C T PCDHA7 Silent p.R502R 0.14 TCGA-CV-7423-01 5 176824887 176824887 G A SLC34A1 Missense_Mutation p.R507H 0.21 tolerated(0.54) benign(0.006) TCGA-CV-7423-01 5 56207180 56207180 C A SETD9 Missense_Mutation p.Q95K 0.50 tolerated(0.75) benign(0.001) TCGA-CV-7423-01 5 71491407 71491407 C T MAP1B Missense_Mutation p.S742L 0.09 unknown(0) TCGA-CV-7423-01 5 96121595 96121595 C T ERAP1 Missense_Mutation p.D614N 0.07 tolerated(0.14) benign(0.005) TCGA-CV-7423-01 6 118880308 118880308 G A PLN 3'UTR 0.23 TCGA-CV-7423-01 6 127796911 127796911 C T SOGA3 Missense_Mutation p.E754K 0.12 deleterious(0.02) probably_damaging(0.93) TCGA-CV-7423-01 6 151857487 151857487 C T CCDC170 Missense_Mutation p.T31M 0.08 deleterious(0.05) probably_damaging(0.939) TCGA-CV-7423-01 6 31635648 31635648 G C CSNK2B-LY6G5B-1181 Missense_Mutation p.D26H 0.38 deleterious(0) probably_damaging(0.931) TCGA-CV-7423-01 6 38670758 38670758 G A GLO1 Missense_Mutation p.P25S 0.11 tolerated(0.06) benign(0.005) TCGA-CV-7423-01 6 38704881 38704881 C G DNAH8 Silent p.L50L 0.06 TCGA-CV-7423-01 6 74331548 74331548 G A SLC17A5 Silent p.I319I 0.30 TCGA-CV-7423-01 7 100246281 100246281 G A ACTL6B Silent p.I189I 0.39 TCGA-CV-7423-01 7 100678877 100678877 G T MUC17 Nonsense_Mutation p.G1394* 0.25 TCGA-CV-7423-01 7 110303748 110303748 G A IMMP2L Silent p.A146A 0.11 TCGA-CV-7423-01 7 73474265 73474265 T A ELN Silent p.G488G 0.08 TCGA-CV-7423-01 7 73474268 73474268 C T ELN Silent p.V489V 0.10 TCGA-CV-7423-01 7 73474271 73474271 T C ELN Silent p.G490G 0.15 TCGA-CV-7423-01 8 101149817 101149817 G A FBXO43 Silent p.I550I 0.42 TCGA-CV-7423-01 8 103309160 103309160 G A UBR5 Missense_Mutation p.T1209M 0.10 deleterious(0) probably_damaging(0.998) TCGA-CV-7423-01 8 135620985 135620985 T C ZFAT Missense_Mutation p.M258V 0.55 tolerated(0.07) benign(0.06) TCGA-CV-7423-01 8 144589967 144589967 G C ZC3H3 Missense_Mutation p.P555R 0.39 deleterious(0.03) benign(0.157) TCGA-CV-7423-01 9 112900135 112900135 G A PALM2-AKAP2 Missense_Mutation p.V771I 0.10 tolerated(0.77) benign(0.005) TCGA-CV-7423-01 9 32423392 32423392 C T ACO1 Missense_Mutation p.P349L 0.11 tolerated(0.06) benign(0.001) TCGA-CV-7423-01 9 446516 446517 - CA DOCK8 Frame_Shift_Ins p.E1911Mfs*10 0.18 TCGA-CV-7423-01 9 84606915 84606923 GCACAGCGA - SPATA31D1 In_Frame_Del p.H511_E513del 0.29 TCGA-CV-7423-01 9 89771559 89771559 T C C9orf170 Silent p.S80S 0.17 TCGA-CV-7423-01 X 16887232 16887232 C A RBBP7 Missense_Mutation p.S87I 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-7423-01 X 16887237 16887237 C G RBBP7 Missense_Mutation p.W85C 0.26 deleterious(0) probably_damaging(0.998) TCGA-CV-7423-01 X 50119144 50119144 A T DGKK RNA 0.55 TCGA-CV-7423-01 X 86877396 86877396 C A KLHL4 Nonsense_Mutation p.Y370* 0.22 TCGA-CV-7424-01 10 118396336 118396336 T C PNLIPRP2 Missense_Mutation p.M326T 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-7424-01 10 118425293 118425293 C G C10orf82 Missense_Mutation p.D34H 0.23 tolerated(0.15) benign(0.048) TCGA-CV-7424-01 10 122668271 122668271 G - WDR11 3'UTR 0.23 TCGA-CV-7424-01 10 26581498 26581498 G A GAD2 Silent p.G497G 0.16 TCGA-CV-7424-01 10 31138093 31138093 C G ZNF438 Missense_Mutation p.R414T 0.20 tolerated(0.06) benign(0.066) TCGA-CV-7424-01 10 37431034 37431034 T G ANKRD30A Silent p.S347S 0.21 TCGA-CV-7424-01 10 43285840 43285840 G A BMS1 Missense_Mutation p.V173I 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-CV-7424-01 10 45799763 45799763 C T OR13A1 Silent p.S36S 0.24 TCGA-CV-7424-01 10 50285363 50285363 C T VSTM4 Missense_Mutation p.V179M 0.27 tolerated(0.21) benign(0.013) TCGA-CV-7424-01 10 50946288 50946288 C T OGDHL Silent p.A780A 0.24 TCGA-CV-7424-01 10 61011420 61011420 G T FAM13C Missense_Mutation p.H517N 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7424-01 10 71103643 71103643 C T HK1 Missense_Mutation p.R46C 0.12 deleterious(0) probably_damaging(0.991) TCGA-CV-7424-01 10 77158752 77158752 C T ZNF503 Missense_Mutation p.A566T 0.20 deleterious(0.01) probably_damaging(0.911) TCGA-CV-7424-01 11 103029735 103029735 C T DYNC2H1 Missense_Mutation p.H1453Y 0.17 probably_damaging(0.948) TCGA-CV-7424-01 11 40136643 40136643 T A LRRC4C Missense_Mutation p.K400N 0.19 deleterious(0.01) benign(0.418) TCGA-CV-7424-01 11 46900560 46900560 C T LRP4 Missense_Mutation p.G1012S 0.05 deleterious(0.02) possibly_damaging(0.848) TCGA-CV-7424-01 11 51515672 51515672 A C OR4C46 Missense_Mutation p.M131L 0.28 tolerated_low_confidence(0.45) benign(0.001) TCGA-CV-7424-01 11 5345347 5345347 G A OR51B2 Missense_Mutation p.L61F 0.11 deleterious(0) probably_damaging(0.992) TCGA-CV-7424-01 11 56185142 56185142 G A OR5R1 Silent p.C189C 0.18 TCGA-CV-7424-01 11 58034658 58034658 G T OR10W1 Missense_Mutation p.R225S 0.29 deleterious(0) probably_damaging(0.927) TCGA-CV-7424-01 11 63517599 63517599 C T RTN3 Silent p.V889V 0.19 TCGA-CV-7424-01 11 65271081 65271081 C T MALAT1 RNA 0.11 TCGA-CV-7424-01 11 66108786 66108786 C A BRMS1 Silent p.L83L 0.21 TCGA-CV-7424-01 11 73789513 73789513 G A C2CD3 Missense_Mutation p.P1417L 0.33 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 11 85456724 85456724 G A SYTL2 Silent p.G115G 0.19 TCGA-CV-7424-01 12 109660402 109660402 A G ACACB Missense_Mutation p.K1219E 0.12 deleterious(0.02) possibly_damaging(0.734) TCGA-CV-7424-01 12 13529255 13529255 C T C12orf36 Missense_Mutation p.D29N 0.28 possibly_damaging(0.728) TCGA-CV-7424-01 12 20905254 20905254 G A SLCO1C1 Silent p.G678G 0.23 TCGA-CV-7424-01 12 4479716 4479716 G A FGF23 Silent p.D183D 0.19 TCGA-CV-7424-01 12 4920723 4920723 C T KCNA6 Missense_Mutation p.R506W 0.08 deleterious_low_confidence(0.01) benign(0.125) TCGA-CV-7424-01 12 57660592 57660592 G A R3HDM2 Missense_Mutation p.P671S 0.20 deleterious(0.03) possibly_damaging(0.685) TCGA-CV-7424-01 12 78516145 78516145 G A NAV3 Missense_Mutation p.G1392D 0.19 tolerated(0.16) benign(0.283) TCGA-CV-7424-01 13 19751321 19751321 G C TUBA3C Missense_Mutation p.P268A 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CV-7424-01 13 24868931 24868931 G A SPATA13 Silent p.L1045L 0.08 TCGA-CV-7424-01 13 28959121 28959121 C T FLT1 Missense_Mutation p.A673T 0.26 tolerated(0.12) benign(0.025) TCGA-CV-7424-01 13 30096451 30096451 C G SLC7A1 Intron 0.25 TCGA-CV-7424-01 13 33247377 33247377 G C PDS5B Missense_Mutation p.G244R 0.24 deleterious(0) possibly_damaging(0.561) TCGA-CV-7424-01 14 105416847 105416847 G A AHNAK2 Silent p.A1647A 0.54 TCGA-CV-7424-01 14 20020129 20020129 C T POTEM Missense_Mutation p.C31Y 0.28 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-CV-7424-01 14 20295797 20295797 G C OR4N2 Missense_Mutation p.G64R 0.17 tolerated(0.6) possibly_damaging(0.774) TCGA-CV-7424-01 14 22134074 22134074 C T OR4E2 Missense_Mutation p.R260W 0.47 tolerated(0.31) benign(0.126) TCGA-CV-7424-01 14 23451154 23451155 - G AJUBA Frame_Shift_Ins p.D108Rfs*16 0.56 TCGA-CV-7424-01 14 24785327 24785327 C G LTB4R Missense_Mutation p.T157R 0.64 tolerated(0.36) benign(0.029) TCGA-CV-7424-01 14 81609450 81609450 G A TSHR Missense_Mutation p.A350T 0.16 tolerated(0.68) benign(0.003) TCGA-CV-7424-01 14 92491671 92491671 G A TRIP11 Nonsense_Mutation p.Q99* 0.38 TCGA-CV-7424-01 15 38773502 38773502 G T FAM98B Missense_Mutation p.D247Y 0.16 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 15 55933315 55933315 G A PRTG Silent p.C711C 0.10 TCGA-CV-7424-01 15 85488521 85488521 T C SLC28A1 3'UTR 0.36 TCGA-CV-7424-01 15 96880846 96880846 C T NR2F2 Nonsense_Mutation p.Q414* 0.11 TCGA-CV-7424-01 16 2164217 2164217 C T PKD1 Missense_Mutation p.R936H 0.08 benign(0.009) TCGA-CV-7424-01 16 24202473 24202473 A T PRKCB Missense_Mutation p.K595N 0.06 deleterious(0.03) benign(0.286) TCGA-CV-7424-01 16 31090886 31090886 T G ZNF646 Missense_Mutation p.C1081G 0.22 deleterious(0) probably_damaging(0.991) TCGA-CV-7424-01 16 49670062 49670062 C T ZNF423 Missense_Mutation p.E1001K 0.15 deleterious(0.01) probably_damaging(0.965) TCGA-CV-7424-01 16 61687979 61687979 G T CDH8 Silent p.R645R 0.15 TCGA-CV-7424-01 16 71318957 71318957 G T CMTR2 Nonsense_Mutation p.Y289* 0.09 TCGA-CV-7424-01 16 71392665 71392665 G C CALB2 5'UTR 0.30 TCGA-CV-7424-01 16 71571468 71571468 G T CHST4 Missense_Mutation p.L296F 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 16 77228545 77228545 G T MON1B Silent p.A263A 0.20 TCGA-CV-7424-01 17 10412811 10412811 G C MYH1 Silent p.L526L 0.48 TCGA-CV-7424-01 17 10608831 10608831 G A ADPRM Silent p.L196L 0.41 TCGA-CV-7424-01 17 33592764 33592764 G A SLFN5 Missense_Mutation p.V845I 0.11 tolerated(0.63) benign(0.004) TCGA-CV-7424-01 17 39914709 39914709 C T JUP Missense_Mutation p.R572Q 0.17 deleterious(0.01) possibly_damaging(0.841) TCGA-CV-7424-01 17 42466667 42466667 C G ITGA2B Missense_Mutation p.D59H 0.09 deleterious(0.05) possibly_damaging(0.702) TCGA-CV-7424-01 17 47895239 47895239 G A KAT7 Missense_Mutation p.A341T 0.18 tolerated(0.31) benign(0.007) TCGA-CV-7424-01 17 56581705 56581705 T C MTMR4 Missense_Mutation p.K482E 0.09 deleterious(0.01) possibly_damaging(0.85) TCGA-CV-7424-01 17 70645045 70645045 C A SLC39A11 Missense_Mutation p.A283S 0.39 tolerated(0.07) benign(0.367) TCGA-CV-7424-01 17 72860034 72860034 C A FDXR Silent p.R429R 0.25 TCGA-CV-7424-01 17 72923807 72923807 C A OTOP2 Missense_Mutation p.A186E 0.29 tolerated(0.06) possibly_damaging(0.796) TCGA-CV-7424-01 17 74392380 74392380 C A UBE2O Nonsense_Mutation p.E880* 0.36 TCGA-CV-7424-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.41 TCGA-CV-7424-01 17 80333144 80333144 A G UTS2R Missense_Mutation p.Y315C 0.56 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 18 22804524 22804524 G A ZNF521 Nonsense_Mutation p.Q1120* 0.14 TCGA-CV-7424-01 18 756831 756831 C G YES1 5'UTR 0.21 TCGA-CV-7424-01 19 11727528 11727528 C T ZNF627 Silent p.L70L 0.10 TCGA-CV-7424-01 19 16528779 16528779 C T EPS15L1 Missense_Mutation p.E363K 0.18 deleterious(0.01) benign(0.381) TCGA-CV-7424-01 19 22171649 22171649 G T ZNF208 Missense_Mutation p.D22E 0.15 tolerated(0.06) benign(0.117) TCGA-CV-7424-01 19 23938239 23938239 G T ZNF681 Missense_Mutation p.L40M 0.11 deleterious(0.01) probably_damaging(0.961) TCGA-CV-7424-01 19 37880679 37880679 C T ZNF527 Silent p.H576H 0.18 TCGA-CV-7424-01 19 47258781 47258781 C T FKRP Missense_Mutation p.S25L 0.15 tolerated(0.71) probably_damaging(0.992) TCGA-CV-7424-01 19 47844440 47844440 C G C5AR2 Silent p.L128L 0.20 TCGA-CV-7424-01 19 48305438 48305438 C T TPRX1 Missense_Mutation p.G277D 0.33 tolerated(0.31) unknown(0) TCGA-CV-7424-01 19 50266465 50266465 C G TSKS Missense_Mutation p.E14Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-CV-7424-01 19 51363198 51363198 A T KLK3 Intron 0.06 TCGA-CV-7424-01 19 52619089 52619089 C A ZNF616 Missense_Mutation p.G443V 0.08 deleterious(0.01) probably_damaging(0.911) TCGA-CV-7424-01 19 52869650 52869650 C T ZNF610 Missense_Mutation p.A340V 0.15 deleterious(0) possibly_damaging(0.671) TCGA-CV-7424-01 19 53058461 53058461 G A ZNF808 Silent p.K764K 0.04 TCGA-CV-7424-01 19 53770328 53770328 C A VN1R4 Missense_Mutation p.W197C 0.24 tolerated(0.05) benign(0.222) TCGA-CV-7424-01 19 5455848 5455848 C G ZNRF4 Missense_Mutation p.L116V 0.20 deleterious(0.01) possibly_damaging(0.577) TCGA-CV-7424-01 19 57175082 57175082 C T ZNF835 Silent p.T495T 0.33 TCGA-CV-7424-01 19 7754154 7754154 C A FCER2 Silent p.A297A 0.23 TCGA-CV-7424-01 19 9006359 9006359 C G MUC16 Missense_Mutation p.R13220T 0.22 possibly_damaging(0.86) TCGA-CV-7424-01 19 9065156 9065156 T C MUC16 Silent p.Q7430Q 0.29 TCGA-CV-7424-01 1 114499787 114499787 G A HIPK1 Missense_Mutation p.R545K 0.52 deleterious(0.01) benign(0.342) TCGA-CV-7424-01 1 151274435 151274435 C T PI4KB Missense_Mutation p.R557K 0.18 deleterious(0.03) benign(0.359) TCGA-CV-7424-01 1 151751319 151751319 G C TDRKH Missense_Mutation p.S242C 0.14 deleterious(0.05) benign(0.001) TCGA-CV-7424-01 1 158612629 158612629 G T SPTA1 Missense_Mutation p.S1527Y 0.22 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 1 172356476 172356476 C T DNM3 Silent p.D754D 0.17 TCGA-CV-7424-01 1 183891440 183891440 G A RGL1 Missense_Mutation p.E732K 0.16 deleterious(0.01) possibly_damaging(0.772) TCGA-CV-7424-01 1 186310164 186310164 T C TPR Missense_Mutation p.N1339S 0.31 benign(0.292) TCGA-CV-7424-01 1 18808991 18808991 G A KLHDC7A Missense_Mutation p.G506S 0.16 tolerated(0.9) benign(0.041) TCGA-CV-7424-01 1 192321331 192321331 T C RGS21 Silent p.D81D 0.51 TCGA-CV-7424-01 1 204228389 204228389 C T PLEKHA6 Missense_Mutation p.R335Q 0.17 deleterious(0.04) benign(0.006) TCGA-CV-7424-01 1 237664039 237664039 A G RYR2 Silent p.P744P 0.28 TCGA-CV-7424-01 1 243437866 243437866 A T SDCCAG8 Missense_Mutation p.T110S 0.29 tolerated(1) benign(0.02) TCGA-CV-7424-01 1 243437867 243437867 C T SDCCAG8 Missense_Mutation p.T110I 0.30 tolerated(0.15) benign(0.029) TCGA-CV-7424-01 1 247588430 247588430 T G NLRP3 Missense_Mutation p.L562R 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-7424-01 1 248525602 248525602 C A OR2T4 Silent p.L240L 0.30 TCGA-CV-7424-01 1 26394070 26394070 C G TRIM63 5'UTR 0.40 TCGA-CV-7424-01 1 35881288 35881288 C T ZMYM4 Missense_Mutation p.P1428S 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-CV-7424-01 1 53746316 53746316 G AC LRP8 Frame_Shift_Ins p.R147Vfs*14 0.22 TCGA-CV-7424-01 1 76205698 76205698 G A ACADM Missense_Mutation p.D172N 0.61 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 1 79357299 79357299 G A ELTD1 Silent p.H640H 0.41 TCGA-CV-7424-01 20 14306666 14306666 C G FLRT3 Missense_Mutation p.C496S 0.25 deleterious(0.01) probably_damaging(0.971) TCGA-CV-7424-01 20 31811751 31811751 C A BPIFA3 Missense_Mutation p.Q88K 0.46 tolerated(0.88) benign(0.199) TCGA-CV-7424-01 20 37150265 37150265 G C RALGAPB Missense_Mutation p.E515Q 0.20 deleterious(0) possibly_damaging(0.841) TCGA-CV-7424-01 20 45130768 45130768 G A ZNF334 Missense_Mutation p.P404S 0.16 tolerated(0.1) possibly_damaging(0.854) TCGA-CV-7424-01 20 60885489 60885489 C G LAMA5 Missense_Mutation p.G3529A 0.15 benign(0.006) TCGA-CV-7424-01 21 41142937 41142937 C T IGSF5 Silent p.L171L 0.45 TCGA-CV-7424-01 21 45563136 45563136 G C C21orf33 Missense_Mutation p.E191Q 0.32 deleterious(0.05) possibly_damaging(0.545) TCGA-CV-7424-01 22 17071667 17071667 A G CCT8L2 3'UTR 0.33 TCGA-CV-7424-01 22 20843396 20843396 C T KLHL22 Missense_Mutation p.A35T 0.28 tolerated(0.53) benign(0.039) TCGA-CV-7424-01 22 24581256 24581256 G T SUSD2 Missense_Mutation p.R326L 0.29 deleterious(0) probably_damaging(0.977) TCGA-CV-7424-01 22 46859643 46859643 C T CELSR1 Missense_Mutation p.E1382K 0.15 deleterious(0) probably_damaging(0.998) TCGA-CV-7424-01 2 109392196 109392196 G C RANBP2 Missense_Mutation p.Q2767H 0.14 tolerated(0.05) benign(0.082) TCGA-CV-7424-01 2 125504962 125504962 G T CNTNAP5 Missense_Mutation p.W744L 0.27 deleterious(0.02) benign(0.083) TCGA-CV-7424-01 2 141751681 141751681 G A LRP1B Missense_Mutation p.H843Y 0.25 benign(0.418) TCGA-CV-7424-01 2 172926266 172926266 C T METAP1D Silent p.Y27Y 0.07 TCGA-CV-7424-01 2 176958202 176958202 G A HOXD13 Missense_Mutation p.G195D 0.13 deleterious(0) benign(0.322) TCGA-CV-7424-01 2 177016735 177016735 C T HOXD4 Missense_Mutation p.T125M 0.15 tolerated(0.07) possibly_damaging(0.643) TCGA-CV-7424-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 2 1805525 1805525 C T MYT1L Silent p.K1071K 0.21 TCGA-CV-7424-01 2 185801912 185801912 A - ZNF804A Frame_Shift_Del p.R599Efs*46 0.12 TCGA-CV-7424-01 2 196866401 196866401 G A DNAH7 Missense_Mutation p.P391S 0.25 tolerated(0.75) benign(0.01) TCGA-CV-7424-01 2 201722606 201722606 G A CLK1 Missense_Mutation p.R265C 0.09 tolerated(0.2) benign(0.122) TCGA-CV-7424-01 2 21224689 21224689 G T APOB Silent p.I4535I 0.38 TCGA-CV-7424-01 2 226447464 226447464 G T NYAP2 Missense_Mutation p.R444M 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-7424-01 2 242650891 242650891 C T ING5 Nonsense_Mutation p.R126* 0.14 TCGA-CV-7424-01 2 27016146 27016146 G A CENPA Silent p.%3D 0.36 TCGA-CV-7424-01 2 31572647 31572647 C T XDH Silent p.Q958Q 0.13 TCGA-CV-7424-01 2 37429106 37429106 C G CEBPZ-AS1 3'UTR 0.24 TCGA-CV-7424-01 2 73678290 73678290 G C ALMS1 Missense_Mutation p.E1545Q 0.16 benign(0.009) TCGA-CV-7424-01 2 74593384 74593384 C G DCTN1 Missense_Mutation p.R916P 0.22 tolerated(0.25) possibly_damaging(0.447) TCGA-CV-7424-01 2 74652067 74652067 A T WDR54 Silent p.P200P 0.25 TCGA-CV-7424-01 2 79385808 79385808 A T REG3A Missense_Mutation p.F55Y 0.31 tolerated(0.19) benign(0.363) TCGA-CV-7424-01 2 86344259 86344259 G A PTCD3 Missense_Mutation p.D131N 0.38 deleterious(0.05) probably_damaging(0.969) TCGA-CV-7424-01 2 96260835 96260835 A G TRIM43 Missense_Mutation p.K150R 0.42 deleterious(0.02) benign(0.346) TCGA-CV-7424-01 3 101283935 101283935 C T TRMT10C Missense_Mutation p.L104F 0.06 tolerated(0.17) benign(0.062) TCGA-CV-7424-01 3 119642255 119642255 G C GSK3B Missense_Mutation p.R148G 0.10 deleterious(0) benign(0.207) TCGA-CV-7424-01 3 124540208 124540208 G A ITGB5 Silent p.G298G 0.06 TCGA-CV-7424-01 3 132319810 132319810 G T ACKR4 Missense_Mutation p.R190L 0.11 tolerated(0.41) benign(0.002) TCGA-CV-7424-01 3 132435688 132435688 T C NPHP3 Missense_Mutation p.M246V 0.19 tolerated(0.29) benign(0.006) TCGA-CV-7424-01 3 143082405 143082405 C A SLC9A9 Nonsense_Mutation p.E509* 0.11 TCGA-CV-7424-01 3 145809656 145809656 G T PLOD2 Silent p.P270P 0.07 TCGA-CV-7424-01 3 161221227 161221227 G A OTOL1 Missense_Mutation p.G311S 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 3 164773033 164773033 T G SI Silent p.A487A 0.45 TCGA-CV-7424-01 3 164783161 164783161 C T SI Missense_Mutation p.R232H 0.12 deleterious(0.04) benign(0.008) TCGA-CV-7424-01 3 170099035 170099035 G C SKIL Missense_Mutation p.D368H 0.07 tolerated(0.08) benign(0.005) TCGA-CV-7424-01 3 178916836 178916836 C G PIK3CA Missense_Mutation p.Q75E 0.18 deleterious(0.01) possibly_damaging(0.872) TCGA-CV-7424-01 3 185304175 185304175 C T SENP2 5'UTR 0.24 TCGA-CV-7424-01 3 185774946 185774946 G A ETV5 Missense_Mutation p.T376I 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-7424-01 3 37033161 37033161 C G EPM2AIP1 Missense_Mutation p.E470Q 0.12 deleterious(0.04) possibly_damaging(0.448) TCGA-CV-7424-01 3 96706569 96706569 T A EPHA6 Missense_Mutation p.F282L 0.10 deleterious(0) probably_damaging(0.994) TCGA-CV-7424-01 4 102984276 102984276 A G BANK1 Silent p.P731P 0.11 TCGA-CV-7424-01 4 106638773 106638773 G A GSTCD Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-CV-7424-01 4 1222118 1222118 G A CTBP1 Missense_Mutation p.A70V 0.06 deleterious(0) possibly_damaging(0.76) TCGA-CV-7424-01 4 1222119 1222119 C A CTBP1 Missense_Mutation p.A70S 0.06 deleterious(0.02) probably_damaging(0.948) TCGA-CV-7424-01 4 129886441 129886441 C T SCLT1 Silent p.E270E 0.22 TCGA-CV-7424-01 4 13545814 13545814 G A NKX3-2 Silent p.A75A 0.40 TCGA-CV-7424-01 4 170028206 170028206 C T SH3RF1 Missense_Mutation p.G764R 0.27 tolerated(0.36) benign(0.303) TCGA-CV-7424-01 4 2883674 2883674 G A ADD1 Missense_Mutation p.G82E 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7424-01 4 88243866 88243866 C G HSD17B13 Missense_Mutation p.G43A 0.05 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 5 13737360 13737360 C A DNAH5 Splice_Site p.X3819_splice 0.21 TCGA-CV-7424-01 5 13850873 13850873 G A DNAH5 Missense_Mutation p.R1668W 0.24 possibly_damaging(0.898) TCGA-CV-7424-01 5 140250371 140250371 G A PCDHA11 Silent p.A561A 0.23 TCGA-CV-7424-01 5 140590194 140590194 G T PCDHB12 Missense_Mutation p.C572F 0.38 deleterious_low_confidence(0.03) benign(0.111) TCGA-CV-7424-01 5 146971222 146971222 T A JAKMIP2 3'UTR 0.42 TCGA-CV-7424-01 5 157240172 157240172 G A CLINT1 Missense_Mutation p.A139V 0.23 tolerated(0.83) benign(0.051) TCGA-CV-7424-01 5 23526576 23526576 C A PRDM9 Missense_Mutation p.S460Y 0.11 deleterious(0.03) possibly_damaging(0.734) TCGA-CV-7424-01 5 23526577 23526577 C A PRDM9 Silent p.S460S 0.12 TCGA-CV-7424-01 5 2755277 2755277 A T C5orf38 3'UTR 0.29 TCGA-CV-7424-01 5 31401376 31401376 C T DROSHA 3'UTR 0.50 TCGA-CV-7424-01 5 34863073 34863073 G A TTC23L Silent p.T150T 0.18 TCGA-CV-7424-01 5 35070259 35070259 A C PRLR Missense_Mutation p.W218G 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 5 37157808 37157808 T C C5orf42 Missense_Mutation p.T2641A 0.18 deleterious(0.03) possibly_damaging(0.803) TCGA-CV-7424-01 5 37379491 37379491 G A WDR70 Missense_Mutation p.E8K 0.26 tolerated_low_confidence(0.85) benign(0.002) TCGA-CV-7424-01 5 40854255 40854255 C G CARD6 Missense_Mutation p.Q941E 0.12 tolerated(0.07) possibly_damaging(0.64) TCGA-CV-7424-01 5 5461296 5461296 G A KIAA0947 Missense_Mutation p.D617N 0.34 tolerated(0.37) benign(0.091) TCGA-CV-7424-01 5 6749698 6749698 C T PAPD7 Nonsense_Mutation p.Q289* 0.19 TCGA-CV-7424-01 5 82832967 82832967 A T VCAN Missense_Mutation p.D1382V 0.24 deleterious(0) possibly_damaging(0.521) TCGA-CV-7424-01 5 89924449 89924449 C G GPR98 Missense_Mutation p.R437G 0.39 possibly_damaging(0.726) TCGA-CV-7424-01 6 112671570 112671570 T C RFPL4B Silent p.F220F 0.17 TCGA-CV-7424-01 6 151671406 151671406 C T AKAP12 Missense_Mutation p.S627L 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7424-01 6 165848793 165848793 G T PDE10A Missense_Mutation p.Q157K 0.14 tolerated(0.38) benign(0.005) TCGA-CV-7424-01 6 29012395 29012395 C T OR2W1 Silent p.K186K 0.20 TCGA-CV-7424-01 6 50011492 50011492 G A DEFB112 Silent p.I46I 0.25 TCGA-CV-7424-01 6 64394278 64394278 C T PHF3 Missense_Mutation p.H219Y 0.16 tolerated(0.06) benign(0.002) TCGA-CV-7424-01 6 75875236 75875236 A G COL12A1 Silent p.D990D 0.09 TCGA-CV-7424-01 6 90459426 90459426 C T MDN1 Missense_Mutation p.D1151N 0.39 probably_damaging(1) TCGA-CV-7424-01 7 100279290 100279290 C T GIGYF1 3'UTR 0.25 TCGA-CV-7424-01 7 101840399 101840399 G A CUX1 Missense_Mutation p.G581R 0.39 deleterious(0) unknown(0) TCGA-CV-7424-01 7 111970331 111970331 G C ZNF277 Intron 0.27 TCGA-CV-7424-01 7 126173489 126173489 G A GRM8 Silent p.S649S 0.09 TCGA-CV-7424-01 7 133948645 133948645 G A LRGUK Missense_Mutation p.R799K 0.09 tolerated(0.5) benign(0.002) TCGA-CV-7424-01 7 148895756 148895756 G A ZNF282 Missense_Mutation p.R166K 0.13 tolerated(0.06) probably_damaging(0.949) TCGA-CV-7424-01 7 150771922 150771922 T A SLC4A2 Missense_Mutation p.I1014N 0.57 deleterious(0) probably_damaging(0.999) TCGA-CV-7424-01 7 150817161 150817161 G A AGAP3 Missense_Mutation p.E353K 0.63 tolerated(0.08) benign(0.446) TCGA-CV-7424-01 7 56130445 56130445 C G CCT6A Missense_Mutation p.S507C 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-CV-7424-01 7 99711749 99711749 G A TAF6 Silent p.I65I 0.13 TCGA-CV-7424-01 8 108913229 108913229 G C RSPO2 3'UTR 0.39 TCGA-CV-7424-01 8 121170405 121170405 C G COL14A1 Missense_Mutation p.S42C 0.13 deleterious(0.02) probably_damaging(0.967) TCGA-CV-7424-01 8 133192492 133192492 C T KCNQ3 Missense_Mutation p.R230H 0.16 deleterious(0) probably_damaging(0.993) TCGA-CV-7424-01 8 135614794 135614794 C A ZFAT Nonsense_Mutation p.E390* 0.06 TCGA-CV-7424-01 8 139696689 139696689 G A COL22A1 Silent p.L997L 0.12 TCGA-CV-7424-01 8 142238403 142238403 C - SLC45A4 5'UTR 0.32 TCGA-CV-7424-01 8 22058882 22058882 C T BMP1 Intron 0.24 TCGA-CV-7424-01 8 23179757 23179757 T G LOXL2 Silent p.T396T 0.40 TCGA-CV-7424-01 8 381402 381402 A T FBXO25 Nonsense_Mutation p.K66* 0.13 TCGA-CV-7424-01 8 41543691 41543691 G A ANK1 Missense_Mutation p.R1498C 0.10 deleterious(0) possibly_damaging(0.896) TCGA-CV-7424-01 8 59407110 59407110 G C CYP7A1 Missense_Mutation p.P332A 0.42 tolerated(0.5) benign(0) TCGA-CV-7424-01 8 68934362 68934362 G A PREX2 Missense_Mutation p.R143Q 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-CV-7424-01 9 102677620 102677620 A C STX17 Missense_Mutation p.R33S 0.27 tolerated(0.25) benign(0.008) TCGA-CV-7424-01 9 108110642 108110642 C G SLC44A1 Nonsense_Mutation p.S137* 0.19 TCGA-CV-7424-01 9 115818900 115818900 T G ZFP37 Missense_Mutation p.E23D 0.10 tolerated_low_confidence(0.62) benign(0) TCGA-CV-7424-01 9 123914854 123914854 C T CNTRL Missense_Mutation p.S1352L 0.55 benign(0.004) TCGA-CV-7424-01 9 135251352 135251363 GAGCCATGCATG - TTF1 In_Frame_Del p.P886_A889del 0.56 TCGA-CV-7424-01 9 135866405 135866405 C T GFI1B Missense_Mutation p.R321W 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7424-01 9 139405241 139405241 G A NOTCH1 Silent p.V868V 0.51 TCGA-CV-7424-01 9 140062169 140062169 C G GRIN1 Intron 0.56 TCGA-CV-7424-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.41 TCGA-CV-7424-01 9 32630185 32630185 G A TAF1L Missense_Mutation p.S1798F 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-7424-01 9 37537796 37537796 C G FBXO10 Missense_Mutation p.E244Q 0.11 deleterious(0.01) possibly_damaging(0.879) TCGA-CV-7424-01 9 96021855 96021855 C T WNK2 Missense_Mutation p.L1009F 0.14 unknown(0) TCGA-CV-7424-01 9 98242784 98242784 C T PTCH1 Nonsense_Mutation p.W278* 0.52 TCGA-CV-7424-01 X 140994922 140994922 C T MAGEC1 Missense_Mutation p.H578Y 0.55 deleterious_low_confidence(0.03) benign(0.152) TCGA-CV-7424-01 X 148627337 148627337 G A CXorf40A Missense_Mutation p.R54Q 0.34 tolerated(0.21) benign(0.002) TCGA-CV-7424-01 X 153760877 153760877 C T G6PD Missense_Mutation p.E428K 0.19 deleterious(0) probably_damaging(0.964) TCGA-CV-7424-01 X 27766113 27766113 G T DCAF8L2 Silent p.V367V 0.56 TCGA-CV-7424-01 X 29973400 29973400 T G IL1RAPL1 Missense_Mutation p.I518M 0.60 tolerated(0.12) benign(0.107) TCGA-CV-7424-01 X 32305682 32305682 C T DMD Nonsense_Mutation p.W2085* 0.52 TCGA-CV-7424-01 X 57934326 57934326 C G ZXDA 3'UTR 0.57 TCGA-CV-7424-01 X 74494189 74494189 C T UPRT Silent p.L34L 0.24 TCGA-CV-7425-01 10 106937929 106937929 G T SORCS3 Missense_Mutation p.M669I 0.10 tolerated(0.11) benign(0.002) TCGA-CV-7425-01 10 52390227 52390227 C A RP11-50E11.3 RNA 0.27 TCGA-CV-7425-01 11 104820329 104820329 C T CASP4 Missense_Mutation p.R241H 0.15 tolerated(0.14) benign(0.168) TCGA-CV-7425-01 11 124489330 124489330 C A PANX3 Nonsense_Mutation p.Y226* 0.12 TCGA-CV-7425-01 11 17428629 17428629 G A ABCC8 Missense_Mutation p.H990Y 0.26 tolerated(0.31) benign(0.042) TCGA-CV-7425-01 11 47504267 47504267 G T CELF1 Missense_Mutation p.L249I 0.24 deleterious(0.03) benign(0.031) TCGA-CV-7425-01 11 62656109 62656109 C T SLC3A2 Missense_Mutation p.R614C 0.23 deleterious(0.02) benign(0.333) TCGA-CV-7425-01 11 65732031 65732031 C T SART1 Silent p.A139A 0.09 TCGA-CV-7425-01 12 20766410 20766410 G A PDE3A Missense_Mutation p.V349I 0.13 deleterious(0.04) possibly_damaging(0.89) TCGA-CV-7425-01 12 50369453 50369453 G A AQP6 Silent p.%3D 0.25 TCGA-CV-7425-01 12 51855040 51855040 A T SLC4A8 Missense_Mutation p.I356F 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-7425-01 12 53554091 53554091 G A CSAD Missense_Mutation p.R354C 0.07 deleterious(0.02) probably_damaging(0.934) TCGA-CV-7425-01 12 57968891 57968891 G A KIF5A Missense_Mutation p.E581K 0.17 deleterious(0) probably_damaging(0.912) TCGA-CV-7425-01 12 72969274 72969274 C A TRHDE Missense_Mutation p.S713Y 0.30 deleterious(0) probably_damaging(0.992) TCGA-CV-7425-01 12 76763056 76763056 C T OSBPL8 Missense_Mutation p.D756N 0.16 deleterious(0.01) probably_damaging(1) TCGA-CV-7425-01 13 58207860 58207860 G A PCDH17 Missense_Mutation p.G394R 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.832) TCGA-CV-7425-01 13 73366582 73366582 A C PIBF1 Intron 0.49 TCGA-CV-7425-01 13 73505317 73505317 G A PIBF1 Missense_Mutation p.R582K 0.28 deleterious(0.03) benign(0.005) TCGA-CV-7425-01 14 69866151 69866151 G T SLC39A9 Missense_Mutation p.G22V 0.13 deleterious(0.04) probably_damaging(1) TCGA-CV-7425-01 15 43785242 43785242 C A TP53BP1 5'UTR 0.40 TCGA-CV-7425-01 15 45388040 45388040 C T DUOX2 Missense_Mutation p.A1356T 0.52 tolerated(0.1) benign(0.014) TCGA-CV-7425-01 15 56134138 56134138 G A NEDD4 Missense_Mutation p.S958F 0.50 deleterious(0) probably_damaging(0.999) TCGA-CV-7425-01 15 67571827 67571827 C T IQCH Silent p.L122L 0.51 TCGA-CV-7425-01 15 93563370 93563370 C T CHD2 Nonsense_Mutation p.R1679* 0.41 TCGA-CV-7425-01 16 21031179 21031179 G T DNAH3 Missense_Mutation p.A1930E 0.12 tolerated(1) benign(0.001) TCGA-CV-7425-01 16 55860122 55860122 C T CES1 Missense_Mutation p.D116N 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-CV-7425-01 16 815614 815614 G A MSLN Silent p.P264P 0.24 TCGA-CV-7425-01 16 83813633 83813633 A G CDH13 Missense_Mutation p.N628S 0.23 deleterious(0) probably_damaging(0.997) TCGA-CV-7425-01 16 89661915 89661915 G T CPNE7 Missense_Mutation p.Q556H 0.24 deleterious(0.03) benign(0.127) TCGA-CV-7425-01 17 10363395 10363395 C T MYH4 Silent p.L430L 0.09 TCGA-CV-7425-01 17 26902241 26902241 C G ALDOC Missense_Mutation p.G75A 0.26 tolerated(0.11) benign(0.35) TCGA-CV-7425-01 17 29220528 29220528 G C ATAD5 Missense_Mutation p.E1553Q 0.42 tolerated(0.3) possibly_damaging(0.478) TCGA-CV-7425-01 17 33507656 33507656 G A UNC45B Silent p.A780A 0.24 TCGA-CV-7425-01 17 37883113 37883113 C T ERBB2 Missense_Mutation p.R1006C 0.19 deleterious(0) possibly_damaging(0.814) TCGA-CV-7425-01 17 42580743 42580743 C T GPATCH8 5'UTR 0.20 TCGA-CV-7425-01 18 14534921 14534921 T A POTEC Missense_Mutation p.N299I 0.10 deleterious(0) possibly_damaging(0.509) TCGA-CV-7425-01 18 6311562 6311562 G A L3MBTL4 Silent p.D21D 0.23 TCGA-CV-7425-01 18 67266711 67266711 C T DOK6 Missense_Mutation p.S89L 0.21 deleterious(0.02) benign(0.381) TCGA-CV-7425-01 18 70526309 70526309 G T NETO1 Missense_Mutation p.A74D 0.16 deleterious(0) probably_damaging(1) TCGA-CV-7425-01 19 19313662 19313662 G C NR2C2AP Missense_Mutation p.R23G 0.23 deleterious(0) possibly_damaging(0.617) TCGA-CV-7425-01 19 1986445 1986445 G A BTBD2 3'UTR 0.21 TCGA-CV-7425-01 19 30935483 30935483 C A ZNF536 Silent p.G338G 0.09 TCGA-CV-7425-01 19 33623312 33623312 G A WDR88 Silent p.P79P 0.21 TCGA-CV-7425-01 19 36048663 36048663 G T ATP4A Nonsense_Mutation p.C529* 0.27 TCGA-CV-7425-01 19 47491269 47491269 C T ARHGAP35 Missense_Mutation p.R1284W 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-7425-01 19 49564712 49564712 G A NTF4 Silent p.T181T 0.32 TCGA-CV-7425-01 19 51981929 51981929 G T CEACAM18 Missense_Mutation p.W72C 0.27 tolerated(0.09) benign(0.144) TCGA-CV-7425-01 19 52443551 52443551 C T ZNF613 Silent p.D35D 0.21 TCGA-CV-7425-01 19 52619658 52619658 A T ZNF616 Missense_Mutation p.N253K 0.11 tolerated(1) benign(0.001) TCGA-CV-7425-01 19 55087311 55087311 G T LILRA2 Silent p.P330P 0.31 TCGA-CV-7425-01 19 55449436 55449436 C T NLRP7 Missense_Mutation p.S702N 0.23 tolerated(0.31) benign(0.004) TCGA-CV-7425-01 19 9009703 9009703 G T MUC16 Missense_Mutation p.P13008H 0.07 probably_damaging(0.991) TCGA-CV-7425-01 1 155234031 155234031 G A CLK2 Missense_Mutation p.R402W 0.25 deleterious(0.03) benign(0.135) TCGA-CV-7425-01 1 158325354 158325354 G A CD1E Missense_Mutation p.R207Q 0.23 tolerated(0.12) benign(0.082) TCGA-CV-7425-01 1 158631136 158631136 G A SPTA1 Missense_Mutation p.A843V 0.05 tolerated(0.13) benign(0.446) TCGA-CV-7425-01 1 158655086 158655086 C T SPTA1 Missense_Mutation p.E26K 0.21 tolerated(0.26) benign(0.003) TCGA-CV-7425-01 1 16464477 16464478 - G EPHA2 Frame_Shift_Ins p.T395Hfs*59 0.41 TCGA-CV-7425-01 1 168274332 168274332 G T TBX19 Missense_Mutation p.A272S 0.28 tolerated(0.73) benign(0.009) TCGA-CV-7425-01 1 179544754 179544754 C T NPHS2 Silent p.A82A 0.25 TCGA-CV-7425-01 1 183192457 183192457 C T LAMC2 Silent p.F317F 0.30 TCGA-CV-7425-01 1 186158913 186158913 G T HMCN1 Missense_Mutation p.R5604L 0.24 probably_damaging(0.953) TCGA-CV-7425-01 1 201022706 201022706 C T CACNA1S Missense_Mutation p.E1226K 0.07 tolerated(0.13) possibly_damaging(0.731) TCGA-CV-7425-01 1 212538464 212538464 T C TMEM206 3'UTR 0.19 TCGA-CV-7425-01 1 26506820 26506820 G A CNKSR1 Intron 0.40 TCGA-CV-7425-01 1 27102150 27102150 C T ARID1A Silent p.N1692N 0.23 TCGA-CV-7425-01 1 32193839 32193839 C T BAI2 Missense_Mutation p.E1487K 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-CV-7425-01 1 46206708 46206708 C T IPP Missense_Mutation p.E197K 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7425-01 1 72400876 72400876 T G NEGR1 Silent p.R99R 0.20 TCGA-CV-7425-01 1 84961625 84961625 C T RPF1 Missense_Mutation p.R254W 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-7425-01 20 3211199 3211199 G A SLC4A11 Silent p.A502A 0.23 TCGA-CV-7425-01 20 50225128 50225128 G C ATP9A Missense_Mutation p.L892V 0.21 deleterious(0) benign(0.373) TCGA-CV-7425-01 20 5948561 5948561 G A MCM8 Silent p.K371K 0.33 TCGA-CV-7425-01 20 9510385 9510385 C T LAMP5 Missense_Mutation p.A254V 0.15 tolerated(0.26) benign(0.008) TCGA-CV-7425-01 21 46320235 46320235 G A ITGB2 Silent p.F299F 0.18 TCGA-CV-7425-01 22 22316888 22316888 C T TOP3B Missense_Mutation p.E480K 0.29 tolerated(0.39) benign(0.009) TCGA-CV-7425-01 22 22890816 22890816 G A PRAME Silent p.S401S 0.15 TCGA-CV-7425-01 22 45204236 45204236 G A ARHGAP8 Missense_Mutation p.V195I 0.18 tolerated(0.35) benign(0.182) TCGA-CV-7425-01 2 1079296 1079296 G C SNTG2 Missense_Mutation p.Q55H 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-7425-01 2 116535403 116535403 C A DPP10 Missense_Mutation p.L456M 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-CV-7425-01 2 140992441 140992441 C T LRP1B Missense_Mutation p.G4525R 0.17 probably_damaging(0.953) TCGA-CV-7425-01 2 141359128 141359128 T C LRP1B Missense_Mutation p.T2294A 0.24 benign(0.217) TCGA-CV-7425-01 2 16086016 16086016 C T MYCN Missense_Mutation p.R398W 0.14 deleterious(0) probably_damaging(0.996) TCGA-CV-7425-01 2 164467308 164467308 T A FIGN Missense_Mutation p.Q345L 0.28 tolerated(0.31) benign(0) TCGA-CV-7425-01 2 179467097 179467097 C T TTN Silent p.K18344K 0.09 TCGA-CV-7425-01 2 191116990 191116990 G A HIBCH Silent p.L187L 0.37 TCGA-CV-7425-01 2 196726485 196726485 G C DNAH7 Silent p.L2564L 0.43 TCGA-CV-7425-01 2 202150030 202150030 C T CASP8 Nonsense_Mutation p.R491* 0.31 TCGA-CV-7425-01 2 220413898 220413898 G A TMEM198 Missense_Mutation p.R256H 0.13 tolerated(0.18) possibly_damaging(0.522) TCGA-CV-7425-01 2 239237417 239237417 T C TRAF3IP1 Silent p.L149L 0.11 TCGA-CV-7425-01 2 55570925 55570925 G A CCDC88A Nonsense_Mutation p.R398* 0.35 TCGA-CV-7425-01 2 74783065 74783065 C T DOK1 Missense_Mutation p.R167C 0.29 deleterious(0) probably_damaging(0.993) TCGA-CV-7425-01 3 118865966 118865966 G C C3orf30 Silent p.V310V 0.17 TCGA-CV-7425-01 3 126220703 126220703 G T UROC1 Missense_Mutation p.L331I 0.18 tolerated(0.46) benign(0.001) TCGA-CV-7425-01 3 167742370 167742370 G C GOLIM4 Missense_Mutation p.P602A 0.17 deleterious(0.02) probably_damaging(1) TCGA-CV-7425-01 3 37056031 37056031 C G MLH1 Missense_Mutation p.I262M 0.28 deleterious(0) probably_damaging(0.997) TCGA-CV-7425-01 3 42915828 42915828 C T CYP8B1 Missense_Mutation p.R494H 0.17 deleterious(0) possibly_damaging(0.908) TCGA-CV-7425-01 3 48476325 48476325 G A CCDC51 Nonsense_Mutation p.Q72* 0.19 TCGA-CV-7425-01 3 48617463 48617463 C A COL7A1 Splice_Site p.X1708_splice 0.24 TCGA-CV-7425-01 3 9822068 9822068 C G TADA3 Missense_Mutation p.E424D 0.24 tolerated(0.27) benign(0.042) TCGA-CV-7425-01 4 126241794 126241794 G A FAT4 Missense_Mutation p.V1410M 0.20 probably_damaging(0.996) TCGA-CV-7425-01 4 153247377 153247379 AAC - FBXW7 In_Frame_Del p.V475del 0.25 TCGA-CV-7425-01 4 183676102 183676102 G T TENM3 Missense_Mutation p.G1528C 0.18 deleterious(0) benign(0.238) TCGA-CV-7425-01 4 22820400 22820400 A T GBA3 Missense_Mutation p.N422Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-7425-01 4 40339349 40339349 C T CHRNA9 Silent p.L111L 0.26 TCGA-CV-7425-01 5 140181874 140181874 A T PCDHA3 Silent p.P364P 0.30 TCGA-CV-7425-01 5 140263705 140263705 G A PCDHA13 Missense_Mutation p.A618T 0.32 tolerated_low_confidence(0.09) benign(0.012) TCGA-CV-7425-01 5 140558774 140558774 C T PCDHB8 Nonsense_Mutation p.Q387* 0.10 TCGA-CV-7425-01 5 154395571 154395571 C T KIF4B Missense_Mutation p.L718F 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-7425-01 5 176025296 176025296 C T GPRIN1 Missense_Mutation p.A514T 0.26 tolerated(0.17) benign(0.025) TCGA-CV-7425-01 5 41382584 41382584 A G PLCXD3 Silent p.P52P 0.12 TCGA-CV-7425-01 5 79336023 79336023 C T THBS4 Missense_Mutation p.S71L 0.26 tolerated(0.08) benign(0.014) TCGA-CV-7425-01 6 105474273 105474273 C G LIN28B Missense_Mutation p.T100R 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-7425-01 6 152674420 152674420 C T SYNE1 Missense_Mutation p.G3744E 0.19 benign(0.002) TCGA-CV-7425-01 6 158449945 158449945 C G SYNJ2 Silent p.L124L 0.29 TCGA-CV-7425-01 6 31239382 31239382 C A HLA-C Nonsense_Mutation p.E113* 0.19 TCGA-CV-7425-01 6 4073664 4073664 C T FAM217A Intron 0.20 TCGA-CV-7425-01 6 99283616 99283616 G A POU3F2 Silent p.A289A 0.20 TCGA-CV-7425-01 7 111368497 111368497 G A DOCK4 Missense_Mutation p.R1912C 0.25 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-CV-7425-01 7 142458445 142458445 G A PRSS1 Missense_Mutation p.G27D 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-CV-7425-01 7 142479948 142479948 G A PRSS3P2 RNA 0.13 TCGA-CV-7425-01 7 14758228 14758228 C T DGKB Silent p.L135L 0.30 TCGA-CV-7425-01 7 150490279 150490279 C T TMEM176B Missense_Mutation p.R166H 0.18 tolerated(0.56) benign(0.006) TCGA-CV-7425-01 7 76610473 76610473 C T UPK3B Intron 0.26 TCGA-CV-7425-01 7 88963052 88963052 C G ZNF804B Silent p.P252P 0.16 TCGA-CV-7425-01 8 103317373 103317373 A G UBR5 Silent p.L923L 0.18 TCGA-CV-7425-01 8 110575682 110575682 C T EBAG9 Intron 0.25 TCGA-CV-7425-01 8 144659308 144659308 C T NAPRT1 Missense_Mutation p.R203Q 0.22 deleterious(0.02) probably_damaging(0.92) TCGA-CV-7425-01 8 71071826 71071826 A G NCOA2 Silent p.L346L 0.31 TCGA-CV-7425-01 8 95866050 95866050 C G INTS8 Silent p.V553V 0.22 TCGA-CV-7425-01 9 124522529 124522529 G - DAB2IP Frame_Shift_Del p.M299Ifs*63 0.41 TCGA-CV-7425-01 9 139994165 139994165 C T MAN1B1 Nonsense_Mutation p.Q250* 0.49 TCGA-CV-7425-01 9 14674243 14674243 G T ZDHHC21 Silent p.P32P 0.06 TCGA-CV-7425-01 9 14740170 14740170 C G FREM1 Missense_Mutation p.G2106A 0.06 tolerated(0.61) benign(0.028) TCGA-CV-7425-01 9 73151732 73151732 C A TRPM3 Missense_Mutation p.V1421L 0.18 tolerated_low_confidence(1) benign(0.001) TCGA-CV-7425-01 9 78848501 78848501 C A PCSK5 Missense_Mutation p.S952Y 0.16 deleterious(0) possibly_damaging(0.492) TCGA-CV-7425-01 X 102337277 102337277 C T NXF3 Missense_Mutation p.E266K 0.10 tolerated(0.06) benign(0.105) TCGA-CV-7425-01 X 129149172 129149172 G A BCORL1 Silent p.T808T 0.11 TCGA-CV-7425-01 X 139865646 139865646 C T CDR1 3'UTR 0.55 TCGA-CV-7425-01 X 144904556 144904556 A T SLITRK2 Missense_Mutation p.I205F 0.12 deleterious(0.01) possibly_damaging(0.696) TCGA-CV-7425-01 X 151138747 151138752 CAGTCT - GABRE In_Frame_Del p.E60_T61del 0.21 TCGA-CV-7425-01 X 34962243 34962243 C A FAM47B Missense_Mutation p.A432E 0.27 tolerated(0.97) possibly_damaging(0.454) TCGA-CV-7425-01 X 38009017 38009017 T C SRPX Missense_Mutation p.R448G 0.11 tolerated(0.15) probably_damaging(0.999) TCGA-CV-7425-01 X 50213157 50213157 C T DGKK RNA 0.12 TCGA-CV-7425-01 X 51150988 51150988 A G CXorf67 Missense_Mutation p.T374A 0.17 tolerated(0.54) benign(0) TCGA-CV-7425-01 X 53613475 53613475 G C HUWE1 Nonsense_Mutation p.S1600* 0.17 TCGA-CV-7425-01 X 53620464 53620464 C T HUWE1 Missense_Mutation p.A1201T 0.10 probably_damaging(0.934) TCGA-CV-7425-01 X 55513554 55513554 G A USP51 Nonsense_Mutation p.R607* 0.06 TCGA-CV-7425-01 X 74494381 74494381 G C UPRT Missense_Mutation p.E98Q 0.10 tolerated(0.15) benign(0.031) TCGA-CV-7425-01 X 74742782 74742782 G A ZDHHC15 Silent p.L26L 0.11 TCGA-CV-7425-01 X 77245124 77245124 G A ATP7A Missense_Mutation p.E336K 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7427-01 10 102003530 102003530 C A CWF19L1 Missense_Mutation p.Q323H 0.24 deleterious(0.04) possibly_damaging(0.852) TCGA-CV-7427-01 10 104173810 104173810 G A PSD Silent p.L423L 0.08 TCGA-CV-7427-01 10 1063059 1063059 G C GTPBP4 Missense_Mutation p.K599N 0.19 tolerated(0.15) benign(0.005) TCGA-CV-7427-01 10 1123898 1123898 C G WDR37 Missense_Mutation p.Q64E 0.24 deleterious(0.01) benign(0.003) TCGA-CV-7427-01 10 12126746 12126746 C G DHTKD1 Missense_Mutation p.S173C 0.18 tolerated(0.09) benign(0.32) TCGA-CV-7427-01 10 64946111 64946111 C T JMJD1C Missense_Mutation p.M2201I 0.20 deleterious(0) benign(0.146) TCGA-CV-7427-01 10 69881415 69881415 G A MYPN Missense_Mutation p.E74K 0.19 tolerated(0.96) benign(0.032) TCGA-CV-7427-01 10 70156607 70156607 G A RUFY2 Nonsense_Mutation p.R145* 0.30 TCGA-CV-7427-01 10 70958267 70958267 G A SUPV3L1 Missense_Mutation p.R388Q 0.19 tolerated(0.39) benign(0.025) TCGA-CV-7427-01 10 75051064 75051064 C G TTC18 Missense_Mutation p.R790T 0.15 tolerated(0.51) benign(0.003) TCGA-CV-7427-01 10 75877857 75877857 C T VCL Missense_Mutation p.A1112V 0.05 deleterious(0) probably_damaging(0.997) TCGA-CV-7427-01 10 93242780 93242780 G C HECTD2 Missense_Mutation p.Q256H 0.30 deleterious(0.01) possibly_damaging(0.54) TCGA-CV-7427-01 10 96702031 96702031 G C CYP2C9 Missense_Mutation p.K138N 0.18 deleterious(0.01) possibly_damaging(0.758) TCGA-CV-7427-01 10 99527298 99527298 G T SFRP5 Missense_Mutation p.F309L 0.19 tolerated_low_confidence(0.31) benign(0.001) TCGA-CV-7427-01 10 99527328 99527328 G A SFRP5 Silent p.F299F 0.24 TCGA-CV-7427-01 11 1016425 1016425 G A MUC6 Nonsense_Mutation p.Q2126* 0.16 TCGA-CV-7427-01 11 102195711 102195711 G A BIRC3 Silent p.L157L 0.24 TCGA-CV-7427-01 11 108384448 108384448 C T EXPH5 Missense_Mutation p.E596K 0.06 tolerated(0.26) benign(0.003) TCGA-CV-7427-01 11 110306635 110306635 C T FDX1 Missense_Mutation p.S88F 0.24 deleterious(0) probably_damaging(0.995) TCGA-CV-7427-01 11 113281596 113281596 C T DRD2 Silent p.L395L 0.22 TCGA-CV-7427-01 11 118361969 118361969 G A KMT2A Missense_Mutation p.M1585I 0.23 probably_damaging(0.985) TCGA-CV-7427-01 11 11988594 11988594 G A DKK3 Missense_Mutation p.H194Y 0.28 deleterious(0.02) possibly_damaging(0.79) TCGA-CV-7427-01 11 132082033 132082033 C G NTM Missense_Mutation p.S173C 0.20 deleterious(0) probably_damaging(0.959) TCGA-CV-7427-01 11 16760339 16760339 G C C11orf58 Missense_Mutation p.R5T 0.06 deleterious(0.05) benign(0.073) TCGA-CV-7427-01 11 32417879 32417879 G A WT1 Silent p.F391F 0.25 TCGA-CV-7427-01 11 33689480 33689480 C G KIAA1549L Missense_Mutation p.S1777C 0.37 deleterious(0) probably_damaging(0.994) TCGA-CV-7427-01 11 49598167 49598167 G A RP11-707M1.1 RNA 0.24 TCGA-CV-7427-01 11 57428910 57428910 G C CLP1 3'UTR 0.38 TCGA-CV-7427-01 11 62286412 62286412 C G AHNAK Silent p.L5159L 0.15 TCGA-CV-7427-01 11 62291157 62291157 C T AHNAK Missense_Mutation p.D3578N 0.25 probably_damaging(0.987) TCGA-CV-7427-01 11 62294428 62294428 C G AHNAK Missense_Mutation p.M2487I 0.25 benign(0.043) TCGA-CV-7427-01 11 62296791 62296791 C G AHNAK Missense_Mutation p.D1700H 0.19 probably_damaging(0.934) TCGA-CV-7427-01 11 62296833 62296833 C G AHNAK Missense_Mutation p.D1686H 0.21 probably_damaging(0.934) TCGA-CV-7427-01 11 62297749 62297749 C T AHNAK Silent p.L1380L 0.25 TCGA-CV-7427-01 11 62298201 62298201 C G AHNAK Missense_Mutation p.E1230Q 0.24 possibly_damaging(0.614) TCGA-CV-7427-01 11 62298786 62298786 C G AHNAK Missense_Mutation p.D1035H 0.14 probably_damaging(0.996) TCGA-CV-7427-01 11 62434972 62434972 G C METTL12 3'UTR 0.14 TCGA-CV-7427-01 11 62620401 62620401 C G SLC3A2 5'Flank 0.21 TCGA-CV-7427-01 11 62620412 62620412 C G SLC3A2 5'Flank 0.20 TCGA-CV-7427-01 11 62649362 62649362 C G SLC3A2 Intron 0.16 TCGA-CV-7427-01 11 62649516 62649516 C T SLC3A2 Silent p.L294L 0.20 TCGA-CV-7427-01 11 6424874 6424874 C T APBB1 Intron 0.18 TCGA-CV-7427-01 11 64536578 64536578 G C SF1 Nonsense_Mutation p.S393* 0.16 TCGA-CV-7427-01 11 65623593 65623593 C T CFL1 Missense_Mutation p.E42K 0.25 tolerated(0.07) benign(0.023) TCGA-CV-7427-01 11 6622653 6622653 C T RRP8 Missense_Mutation p.A215T 0.20 tolerated(0.12) benign(0.075) TCGA-CV-7427-01 11 68704300 68704300 G C IGHMBP2 Missense_Mutation p.K784N 0.22 deleterious(0.01) probably_damaging(0.949) TCGA-CV-7427-01 11 72600885 72600885 G A FCHSD2 Missense_Mutation p.H344Y 0.37 deleterious(0.01) possibly_damaging(0.656) TCGA-CV-7427-01 11 73372592 73372592 G C PLEKHB1 Missense_Mutation p.G226A 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-7427-01 11 74056565 74056565 G C PGM2L1 Silent p.V389V 0.15 TCGA-CV-7427-01 11 74799889 74799889 G C OR2AT4 Silent p.L290L 0.24 TCGA-CV-7427-01 11 94179020 94179020 G C MRE11A Nonsense_Mutation p.S608* 0.25 TCGA-CV-7427-01 12 109613984 109613984 G C ACACB Missense_Mutation p.L451F 0.43 deleterious(0) possibly_damaging(0.653) TCGA-CV-7427-01 12 110628776 110628776 G C IFT81 Missense_Mutation p.E464Q 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-CV-7427-01 12 110628806 110628809 GAAG AAA IFT81 Frame_Shift_Del p.E474Kfs*5 0.25 TCGA-CV-7427-01 12 11214128 11214128 C G TAS2R46 Missense_Mutation p.E256Q 0.12 tolerated(1) benign(0.002) TCGA-CV-7427-01 12 117603392 117603392 C T FBXO21 Silent p.L408L 0.10 TCGA-CV-7427-01 12 121670829 121670829 C T P2RX4 Silent p.L374L 0.08 TCGA-CV-7427-01 12 121670850 121670850 C G P2RX4 Silent p.L381L 0.08 TCGA-CV-7427-01 12 12284896 12284896 C T LRP6 Missense_Mutation p.E1277K 0.17 tolerated(0.45) benign(0.013) TCGA-CV-7427-01 12 125398224 125398224 C G UBC Missense_Mutation p.D32H 0.07 deleterious(0) possibly_damaging(0.844) TCGA-CV-7427-01 12 129569056 129569056 G C TMEM132D Missense_Mutation p.I545M 0.29 deleterious(0) probably_damaging(0.964) TCGA-CV-7427-01 12 22015908 22015908 C T ABCC9 Missense_Mutation p.G773E 0.15 tolerated(0.4) possibly_damaging(0.722) TCGA-CV-7427-01 12 31116785 31116785 G A TSPAN11 Missense_Mutation p.V37M 0.28 tolerated(0.07) benign(0.257) TCGA-CV-7427-01 12 39947792 39947792 C G ABCD2 Missense_Mutation p.Q715H 0.13 tolerated(0.05) benign(0.014) TCGA-CV-7427-01 12 49061257 49061257 G A KANSL2 Intron 0.34 TCGA-CV-7427-01 12 49171950 49171950 G C ADCY6 Missense_Mutation p.Q319E 0.21 tolerated(0.37) benign(0.006) TCGA-CV-7427-01 12 50027427 50027427 C G PRPF40B Silent p.V196V 0.10 TCGA-CV-7427-01 12 52967185 52967185 T C KRT74 Missense_Mutation p.N126S 0.28 deleterious(0.02) benign(0.196) TCGA-CV-7427-01 12 54367025 54367025 G A HOXC11 5'UTR 0.27 TCGA-CV-7427-01 12 54635494 54635494 G A CBX5 3'UTR 0.31 TCGA-CV-7427-01 12 54730999 54730999 C T COPZ1 Intron 0.25 TCGA-CV-7427-01 12 56531676 56531676 G C ESYT1 Missense_Mutation p.D736H 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-7427-01 12 58018660 58018660 C T SLC26A10 Silent p.V413V 0.22 TCGA-CV-7427-01 12 65722331 65722331 C T MSRB3 Missense_Mutation p.H78Y 0.16 tolerated(0.07) probably_damaging(0.969) TCGA-CV-7427-01 12 67699870 67699870 C T CAND1 Nonsense_Mutation p.R808* 0.36 TCGA-CV-7427-01 12 70983837 70983837 C T PTPRB Missense_Mutation p.D653N 0.10 tolerated(0.28) benign(0.005) TCGA-CV-7427-01 12 75444683 75444683 G A KCNC2 Silent p.L368L 0.40 TCGA-CV-7427-01 12 7942253 7942253 G C NANOG Missense_Mutation p.E15Q 0.09 deleterious(0.05) benign(0.213) TCGA-CV-7427-01 12 81613830 81613830 C A ACSS3 Silent p.R497R 0.13 TCGA-CV-7427-01 12 95478362 95478362 C G FGD6 Missense_Mutation p.E1390Q 0.38 deleterious(0.05) possibly_damaging(0.864) TCGA-CV-7427-01 12 978248 978248 G A WNK1 Intron 0.12 TCGA-CV-7427-01 13 111077163 111077163 G A COL4A2 Missense_Mutation p.G88E 0.22 probably_damaging(1) TCGA-CV-7427-01 13 114079395 114079395 T C ADPRHL1 Missense_Mutation p.D249G 0.18 tolerated(0.06) benign(0.062) TCGA-CV-7427-01 13 114781703 114781703 C T RASA3 Silent p.L417L 0.18 TCGA-CV-7427-01 13 115004930 115004930 G T CDC16 Missense_Mutation p.D116Y 0.18 deleterious(0.03) benign(0.14) TCGA-CV-7427-01 13 20716822 20716822 G C GJA3 Missense_Mutation p.I202M 0.28 deleterious(0) probably_damaging(0.993) TCGA-CV-7427-01 13 23912713 23912713 G C SACS Missense_Mutation p.H1768D 0.12 benign(0.316) TCGA-CV-7427-01 13 25026704 25026704 C T PARP4 Missense_Mutation p.D952N 0.25 deleterious(0) possibly_damaging(0.771) TCGA-CV-7427-01 13 26125501 26125501 G C ATP8A2 Missense_Mutation p.R306T 0.20 deleterious(0.04) possibly_damaging(0.495) TCGA-CV-7427-01 13 28009980 28009980 G C MTIF3 Missense_Mutation p.F223L 0.22 deleterious(0.01) probably_damaging(0.918) TCGA-CV-7427-01 13 31495235 31495235 C T MEDAG Missense_Mutation p.S158L 0.14 deleterious(0.02) probably_damaging(0.978) TCGA-CV-7427-01 13 35751193 35751193 C T NBEA Nonsense_Mutation p.Q1539* 0.25 TCGA-CV-7427-01 13 42876840 42876840 C G AKAP11 Missense_Mutation p.L1320V 0.10 deleterious(0.04) possibly_damaging(0.523) TCGA-CV-7427-01 13 46733075 46733075 G C LCP1 Missense_Mutation p.F38L 0.25 tolerated(1) benign(0.074) TCGA-CV-7427-01 13 48563043 48563043 G A SUCLA2 Silent p.L115L 0.25 TCGA-CV-7427-01 13 58207078 58207078 C G PCDH17 Missense_Mutation p.S133C 0.33 deleterious(0) benign(0.289) TCGA-CV-7427-01 13 77633702 77633702 C T MYCBP2 Missense_Mutation p.E4328K 0.10 probably_damaging(0.965) TCGA-CV-7427-01 13 77699528 77699528 C G MYCBP2 Missense_Mutation p.E2616Q 0.20 probably_damaging(0.985) TCGA-CV-7427-01 14 100405558 100405558 G A EML1 Missense_Mutation p.G758E 0.09 deleterious(0) probably_damaging(0.929) TCGA-CV-7427-01 14 100405590 100405590 G C EML1 Missense_Mutation p.E769Q 0.11 tolerated(0.06) benign(0.012) TCGA-CV-7427-01 14 100789775 100789775 C T SLC25A47 Silent p.I8I 0.46 TCGA-CV-7427-01 14 102455173 102455173 G C DYNC1H1 Missense_Mutation p.G951A 0.26 benign(0.025) TCGA-CV-7427-01 14 102549502 102549502 C T HSP90AA1 Missense_Mutation p.V664M 0.21 deleterious_low_confidence(0.03) unknown(0) TCGA-CV-7427-01 14 103596165 103596165 G A TNFAIP2 Missense_Mutation p.E317K 0.26 deleterious(0) probably_damaging(0.979) TCGA-CV-7427-01 14 104129155 104129155 G A KLC1 Missense_Mutation p.E230K 0.31 deleterious(0.02) possibly_damaging(0.584) TCGA-CV-7427-01 14 106829597 106829597 C T IGHV4-34 Silent p.A122A 0.22 TCGA-CV-7427-01 14 23745036 23745036 C T HOMEZ Silent p.E467E 0.15 TCGA-CV-7427-01 14 50734600 50734600 C T L2HGDH Missense_Mutation p.G312E 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 14 59821922 59821922 C T DAAM1 Missense_Mutation p.A809V 0.25 deleterious(0.04) possibly_damaging(0.636) TCGA-CV-7427-01 14 64691209 64691209 G C SYNE2 Missense_Mutation p.E6805Q 0.10 possibly_damaging(0.689) TCGA-CV-7427-01 14 70518823 70518823 C G SLC8A3 Missense_Mutation p.D639H 0.28 tolerated(0.05) benign(0.002) TCGA-CV-7427-01 14 75279341 75279341 G C YLPM1 Missense_Mutation p.R1786S 0.38 probably_damaging(0.973) TCGA-CV-7427-01 14 77319682 77319682 G C C14orf166B Missense_Mutation p.D313H 0.25 tolerated(0.31) benign(0.001) TCGA-CV-7427-01 14 77319694 77319694 G A C14orf166B Missense_Mutation p.E317K 0.19 tolerated(0.07) benign(0.028) TCGA-CV-7427-01 14 88935898 88935898 G T PTPN21 Silent p.L1060L 0.10 TCGA-CV-7427-01 14 92040776 92040776 C T AL133373.1 Missense_Mutation p.E61K 0.36 unknown(0) TCGA-CV-7427-01 14 94528623 94528623 C G DDX24 Missense_Mutation p.E355Q 0.24 tolerated(0.09) possibly_damaging(0.529) TCGA-CV-7427-01 14 99929847 99929847 C G SETD3 Missense_Mutation p.E58Q 0.14 deleterious(0) possibly_damaging(0.456) TCGA-CV-7427-01 15 41602045 41602045 C G OIP5 Silent p.L199L 0.26 TCGA-CV-7427-01 15 43513073 43513073 C G EPB42 5'UTR 0.25 TCGA-CV-7427-01 15 43891383 43891383 G C CKMT1B Missense_Mutation p.G389A 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 15 49327631 49327631 A G SECISBP2L Missense_Mutation p.I143T 0.20 deleterious_low_confidence(0) benign(0.001) TCGA-CV-7427-01 15 52069169 52069169 C T TMOD2 Silent p.F149F 0.25 TCGA-CV-7427-01 15 52905993 52905993 C T FAM214A Silent p.L26L 0.28 TCGA-CV-7427-01 15 64791723 64791723 C T ZNF609 Silent p.I35I 0.20 TCGA-CV-7427-01 15 65458988 65458988 G C CLPX Missense_Mutation p.P165R 0.27 tolerated(0.07) possibly_damaging(0.861) TCGA-CV-7427-01 15 65499240 65499240 C T CILP Missense_Mutation p.A102T 0.20 tolerated(0.07) benign(0.403) TCGA-CV-7427-01 15 67482843 67482843 C T SMAD3 Missense_Mutation p.S416F 0.48 deleterious(0) possibly_damaging(0.807) TCGA-CV-7427-01 15 72638768 72638768 C T HEXA Intron 0.22 TCGA-CV-7427-01 15 73615835 73615835 C A HCN4 Missense_Mutation p.A867S 0.17 tolerated_low_confidence(0.32) unknown(0) TCGA-CV-7427-01 15 73616079 73616079 G A HCN4 Silent p.A785A 0.24 TCGA-CV-7427-01 15 74325651 74325651 C T PML Missense_Mutation p.S518L 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-CV-7427-01 15 74365132 74365132 C G GOLGA6A Missense_Mutation p.Q484H 0.05 tolerated(0.06) possibly_damaging(0.847) TCGA-CV-7427-01 15 77471990 77471990 C T PEAK1 Missense_Mutation p.R760K 0.31 tolerated(0.15) benign(0.025) TCGA-CV-7427-01 15 83221346 83221346 C A CPEB1 Nonsense_Mutation p.E362* 0.23 TCGA-CV-7427-01 15 89862269 89862269 C T POLG Missense_Mutation p.E1056K 0.06 tolerated(0.08) possibly_damaging(0.733) TCGA-CV-7427-01 15 91510405 91510405 C G PRC1 Missense_Mutation p.D607H 0.26 deleterious(0.02) possibly_damaging(0.629) TCGA-CV-7427-01 16 1272193 1272193 C T TPSG1 Intron 0.25 TCGA-CV-7427-01 16 17235129 17235129 C G XYLT1 Missense_Mutation p.D490H 0.26 deleterious(0) probably_damaging(0.995) TCGA-CV-7427-01 16 20791878 20791878 G C ACSM3 Intron 0.31 TCGA-CV-7427-01 16 30365574 30365574 C T CD2BP2 Missense_Mutation p.D50N 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 16 31499472 31499472 G C SLC5A2 Missense_Mutation p.M333I 0.19 deleterious(0) probably_damaging(0.997) TCGA-CV-7427-01 16 48286135 48286135 G - LONP2 Frame_Shift_Del p.I110Lfs*5 0.28 TCGA-CV-7427-01 16 56492471 56492471 G C OGFOD1 Missense_Mutation p.L104F 0.15 deleterious(0.01) possibly_damaging(0.696) TCGA-CV-7427-01 16 56492479 56492479 G A OGFOD1 Missense_Mutation p.R107K 0.16 tolerated(0.42) benign(0.01) TCGA-CV-7427-01 16 56535295 56535295 G C BBS2 Missense_Mutation p.H399D 0.21 tolerated(0.09) probably_damaging(0.972) TCGA-CV-7427-01 16 56703788 56703788 C T MT1H 5'UTR 0.15 TCGA-CV-7427-01 16 57016142 57016142 C T CETP Silent p.V438V 0.11 TCGA-CV-7427-01 16 58019836 58019836 C G TEPP Missense_Mutation p.S286C 0.13 deleterious(0.01) probably_damaging(0.975) TCGA-CV-7427-01 16 58296295 58296295 G C CCDC113 Missense_Mutation p.E212Q 0.24 tolerated(0.21) possibly_damaging(0.547) TCGA-CV-7427-01 16 58757719 58757719 C G GOT2 Missense_Mutation p.K59N 0.23 deleterious(0) probably_damaging(0.994) TCGA-CV-7427-01 16 67405069 67405069 G C LRRC36 Missense_Mutation p.R473T 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.627) TCGA-CV-7427-01 16 67573997 67573997 C T FAM65A Silent p.L172L 0.27 TCGA-CV-7427-01 16 69148496 69148496 G A HAS3 Missense_Mutation p.R330Q 0.28 tolerated(0.28) benign(0.005) TCGA-CV-7427-01 16 70553601 70553601 C G COG4 Missense_Mutation p.E69Q 0.13 tolerated(0.47) possibly_damaging(0.498) TCGA-CV-7427-01 16 81991683 81991683 C G PLCG2 3'UTR 0.25 TCGA-CV-7427-01 16 87451158 87451158 G C ZCCHC14 Missense_Mutation p.Q294E 0.26 deleterious(0.01) possibly_damaging(0.835) TCGA-CV-7427-01 16 89655212 89655212 G A CPNE7 Missense_Mutation p.D428N 0.34 deleterious(0.02) probably_damaging(0.919) TCGA-CV-7427-01 17 15942786 15942786 C T NCOR1 Missense_Mutation p.E2306K 0.15 possibly_damaging(0.48) TCGA-CV-7427-01 17 16029434 16029434 C G NCOR1 Missense_Mutation p.K532N 0.30 benign(0.051) TCGA-CV-7427-01 17 17719301 17719301 C G SREBF1 Missense_Mutation p.Q782H 0.10 tolerated(0.55) benign(0.008) TCGA-CV-7427-01 17 18220060 18220060 G A SMCR8 Silent p.L319L 0.24 TCGA-CV-7427-01 17 18670101 18670101 G A FBXW10 Missense_Mutation p.D544N 0.34 tolerated(0.11) benign(0.167) TCGA-CV-7427-01 17 26114730 26114730 G A NOS2 Silent p.V147V 0.22 TCGA-CV-7427-01 17 26940613 26940613 C T RP11-192H23.4 Missense_Mutation p.E57K 0.08 tolerated_low_confidence(0.77) benign(0.084) TCGA-CV-7427-01 17 28506198 28506198 G C NSRP1 Missense_Mutation p.E131Q 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-CV-7427-01 17 34937844 34937844 G A GGNBP2 Missense_Mutation p.R364Q 0.33 tolerated(0.07) benign(0.346) TCGA-CV-7427-01 17 38450695 38450695 G C CDC6 Missense_Mutation p.L341F 0.22 deleterious(0) probably_damaging(0.95) TCGA-CV-7427-01 17 38978336 38978336 C A KRT10 Nonsense_Mutation p.E168* 0.22 TCGA-CV-7427-01 17 39975508 39975508 G C FKBP10 Silent p.L258L 0.26 TCGA-CV-7427-01 17 40318431 40318431 G A KCNH4 Missense_Mutation p.S575L 0.13 deleterious(0.01) possibly_damaging(0.862) TCGA-CV-7427-01 17 40318439 40318439 G C KCNH4 Missense_Mutation p.I572M 0.18 deleterious(0) possibly_damaging(0.593) TCGA-CV-7427-01 17 40362425 40362425 C T STAT5B Missense_Mutation p.D591N 0.19 deleterious(0) possibly_damaging(0.693) TCGA-CV-7427-01 17 40843231 40843231 C G CNTNAP1 Missense_Mutation p.I712M 0.12 deleterious(0) possibly_damaging(0.605) TCGA-CV-7427-01 17 42855094 42855094 G A ADAM11 Missense_Mutation p.D645N 0.21 deleterious(0.03) possibly_damaging(0.493) TCGA-CV-7427-01 17 43159088 43159088 G A NMT1 Missense_Mutation p.E70K 0.43 tolerated(0.97) benign(0.044) TCGA-CV-7427-01 17 43159090 43159090 G A NMT1 Silent p.E70E 0.36 TCGA-CV-7427-01 17 43364681 43364681 C A MAP3K14 RNA 0.18 TCGA-CV-7427-01 17 455171 455171 G A VPS53 Nonsense_Mutation p.Q603* 0.31 TCGA-CV-7427-01 17 46926688 46926688 C A CALCOCO2 Silent p.I188I 0.30 TCGA-CV-7427-01 17 47388699 47388699 G A ZNF652 Silent p.F428F 0.22 TCGA-CV-7427-01 17 48646576 48646576 G C CACNA1G Missense_Mutation p.K135N 0.20 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 17 57963531 57963531 G A TUBD1 Missense_Mutation p.S78L 0.07 tolerated(0.09) benign(0.013) TCGA-CV-7427-01 17 58288742 58288742 G C USP32 Silent p.L771L 0.06 TCGA-CV-7427-01 17 61512584 61512584 G A CYB561 Silent p.F142F 0.20 TCGA-CV-7427-01 17 61611639 61611639 C T KCNH6 Silent p.F356F 0.28 TCGA-CV-7427-01 17 649539 649539 G C GEMIN4 Missense_Mutation p.L582V 0.27 deleterious(0) probably_damaging(0.998) TCGA-CV-7427-01 17 66972084 66972084 C T ABCA9 Nonsense_Mutation p.W1616* 0.20 TCGA-CV-7427-01 17 7228995 7228995 G C NEURL4 Missense_Mutation p.S444C 0.22 deleterious(0) possibly_damaging(0.784) TCGA-CV-7427-01 17 7496331 7496331 G A FXR2 Missense_Mutation p.S500L 0.16 tolerated_low_confidence(0.64) benign(0.105) TCGA-CV-7427-01 17 7752247 7752247 G A KDM6B Missense_Mutation p.E881K 0.24 possibly_damaging(0.486) TCGA-CV-7427-01 17 7753196 7753196 G A KDM6B Silent p.V1166V 0.24 TCGA-CV-7427-01 17 78063659 78063659 G A CCDC40 Missense_Mutation p.M936I 0.16 deleterious(0.02) probably_damaging(0.947) TCGA-CV-7427-01 17 78317686 78317686 C G RNF213 Missense_Mutation p.F2071L 0.17 probably_damaging(0.997) TCGA-CV-7427-01 17 79632428 79632428 C A OXLD1 Nonsense_Mutation p.E83* 0.27 TCGA-CV-7427-01 18 12324975 12324975 G A TUBB6 Intron 0.26 TCGA-CV-7427-01 18 21478998 21478998 G A LAMA3 Silent p.V1935V 0.35 TCGA-CV-7427-01 18 2913162 2913162 C T EMILIN2 Silent p.N974N 0.15 TCGA-CV-7427-01 18 34802101 34802101 C G KIAA1328 Missense_Mutation p.L549V 0.50 tolerated(0.62) benign(0.002) TCGA-CV-7427-01 18 44560858 44560858 C G TCEB3B Missense_Mutation p.E260Q 0.18 deleterious(0.04) benign(0.009) TCGA-CV-7427-01 18 55359051 55359051 G C ATP8B1 Missense_Mutation p.S403C 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-CV-7427-01 18 60642651 60642651 G A PHLPP1 Silent p.Q1259Q 0.07 TCGA-CV-7427-01 18 67365819 67365819 G C DOK6 Missense_Mutation p.E197Q 0.14 deleterious(0.01) probably_damaging(0.959) TCGA-CV-7427-01 18 67406304 67406304 G A DOK6 Missense_Mutation p.E235K 0.08 tolerated(0.49) benign(0.023) TCGA-CV-7427-01 18 72183552 72183552 G A CNDP2 Silent p.V331V 0.23 TCGA-CV-7427-01 18 8370921 8370921 G C PTPRM Missense_Mutation p.E1030Q 0.11 tolerated(0.05) benign(0.442) TCGA-CV-7427-01 18 9256444 9256444 C G ANKRD12 Nonsense_Mutation p.S1060* 0.18 TCGA-CV-7427-01 18 9887362 9887362 G A TXNDC2 Missense_Mutation p.E296K 0.30 tolerated(0.2) unknown(0) TCGA-CV-7427-01 19 10226442 10226442 G T EIF3G Missense_Mutation p.T253N 0.23 tolerated(0.15) benign(0.008) TCGA-CV-7427-01 19 10870479 10870479 C T DNM2 Missense_Mutation p.S76L 0.25 tolerated(0.18) benign(0.158) TCGA-CV-7427-01 19 11036435 11036435 G A YIPF2 Silent p.I98I 0.30 TCGA-CV-7427-01 19 1109708 1109708 G A SBNO2 Nonsense_Mutation p.Q1033* 0.23 TCGA-CV-7427-01 19 12297854 12297854 G C ZNF136 Missense_Mutation p.E221Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-7427-01 19 12383859 12383859 G A ZNF44 Missense_Mutation p.S452F 0.19 tolerated(0.69) benign(0.378) TCGA-CV-7427-01 19 12883482 12883482 C G HOOK2 Missense_Mutation p.R134T 0.10 tolerated(0.61) benign(0.03) TCGA-CV-7427-01 19 13356019 13356019 C T CACNA1A Missense_Mutation p.D1643N 0.33 probably_damaging(0.913) TCGA-CV-7427-01 19 17311114 17311114 G C MYO9B Missense_Mutation p.K1417N 0.14 deleterious(0.04) possibly_damaging(0.635) TCGA-CV-7427-01 19 17835961 17835961 C T MAP1S Missense_Mutation p.S136L 0.23 deleterious(0) probably_damaging(0.99) TCGA-CV-7427-01 19 2110821 2110821 G A AP3D1 Silent p.S1020S 0.17 TCGA-CV-7427-01 19 21992317 21992317 G A ZNF43 Silent p.F174F 0.43 TCGA-CV-7427-01 19 22155770 22155770 C G ZNF208 Missense_Mutation p.G689A 0.17 deleterious(0.02) benign(0.302) TCGA-CV-7427-01 19 3028341 3028341 C A TLE2 Silent p.T54T 0.27 TCGA-CV-7427-01 19 3494056 3494056 C T DOHH Silent p.L107L 0.19 TCGA-CV-7427-01 19 3494073 3494073 C T DOHH Missense_Mutation p.E102K 0.20 tolerated(0.27) benign(0.012) TCGA-CV-7427-01 19 37368436 37368436 G C ZNF345 Missense_Mutation p.C235S 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 19 39989650 39989650 G A DLL3 Silent p.Q12Q 0.21 TCGA-CV-7427-01 19 42753748 42753748 G A ERF Silent p.L172L 0.18 TCGA-CV-7427-01 19 42875617 42875617 G C MEGF8 Missense_Mutation p.D2351H 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-CV-7427-01 19 49477904 49477904 G A GYS1 Silent p.L465L 0.19 TCGA-CV-7427-01 19 52091027 52091027 G A ZNF175 Silent p.G481G 0.35 TCGA-CV-7427-01 19 55179456 55179456 C G LILRB4 Missense_Mutation p.L445V 0.19 deleterious(0.02) benign(0.002) TCGA-CV-7427-01 19 55591869 55591869 G C EPS8L1 Intron 0.16 TCGA-CV-7427-01 19 5622555 5622555 C G SAFB2 Missense_Mutation p.E58Q 0.40 deleterious(0) probably_damaging(0.944) TCGA-CV-7427-01 19 56658417 56658417 G T ZNF444 Missense_Mutation p.R46L 0.44 tolerated(0.31) probably_damaging(0.999) TCGA-CV-7427-01 19 58439254 58439254 C T ZNF418 Missense_Mutation p.D99N 0.19 deleterious(0) probably_damaging(0.956) TCGA-CV-7427-01 19 6007164 6007164 C T RFX2 Missense_Mutation p.E421K 0.19 tolerated(0.45) benign(0.379) TCGA-CV-7427-01 19 6833552 6833552 C G VAV1 Missense_Mutation p.Q542E 0.18 deleterious(0) benign(0.404) TCGA-CV-7427-01 19 8587564 8587564 C T MYO1F Missense_Mutation p.E1002K 0.20 tolerated(0.59) benign(0.002) TCGA-CV-7427-01 19 8650504 8650504 C T ADAMTS10 Missense_Mutation p.D901N 0.33 tolerated(0.68) benign(0.007) TCGA-CV-7427-01 19 9492159 9492159 G C ZNF177 Missense_Mutation p.K384N 0.10 tolerated(0.46) probably_damaging(0.997) TCGA-CV-7427-01 19 9875665 9875665 C T ZNF846 5'UTR 0.11 TCGA-CV-7427-01 1 101339776 101339776 C T EXTL2 Missense_Mutation p.D239N 0.33 tolerated(0.07) benign(0.375) TCGA-CV-7427-01 1 11077026 11077026 G A TARDBP Missense_Mutation p.E122K 0.20 tolerated(0.19) benign(0.038) TCGA-CV-7427-01 1 1147457 1147457 C A TNFRSF4 Nonsense_Mutation p.E167* 0.24 TCGA-CV-7427-01 1 115282405 115282405 G T CSDE1 Missense_Mutation p.S82Y 0.27 deleterious(0) probably_damaging(0.986) TCGA-CV-7427-01 1 120480487 120480487 G - NOTCH2 Frame_Shift_Del p.R1111Gfs*96 0.19 TCGA-CV-7427-01 1 120906057 120906057 G A RP11-439A17.4 5'Flank 0.35 TCGA-CV-7427-01 1 12819396 12819396 G C C1orf158 Missense_Mutation p.E127Q 0.21 tolerated(0.32) probably_damaging(0.999) TCGA-CV-7427-01 1 12837643 12837643 C T PRAMEF12 Silent p.F451F 0.25 TCGA-CV-7427-01 1 150233959 150233959 G A CA14 Missense_Mutation p.D60N 0.28 tolerated(0.57) benign(0.001) TCGA-CV-7427-01 1 150923439 150923439 G A SETDB1 Missense_Mutation p.E696K 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7427-01 1 151630850 151630850 C T SNX27 Missense_Mutation p.S228L 0.12 deleterious(0) possibly_damaging(0.796) TCGA-CV-7427-01 1 152191644 152191644 C G HRNR Missense_Mutation p.E821Q 0.19 unknown(0) TCGA-CV-7427-01 1 153536239 153536239 G C S100A2 Missense_Mutation p.L38V 0.27 tolerated(0.12) benign(0.268) TCGA-CV-7427-01 1 155030888 155030888 C T ADAM15 Silent p.L630L 0.27 TCGA-CV-7427-01 1 155884115 155884115 G C KIAA0907 Intron 0.18 TCGA-CV-7427-01 1 156006763 156006763 G A UBQLN4 3'UTR 0.23 TCGA-CV-7427-01 1 158324275 158324275 C T CD1E Missense_Mutation p.S56L 0.25 deleterious(0.01) possibly_damaging(0.76) TCGA-CV-7427-01 1 158641186 158641186 G A SPTA1 Nonsense_Mutation p.Q516* 0.19 TCGA-CV-7427-01 1 15904338 15904338 C T AGMAT Missense_Mutation p.E248K 0.21 deleterious(0.02) benign(0.165) TCGA-CV-7427-01 1 160281696 160281696 G A COPA Silent p.F346F 0.17 TCGA-CV-7427-01 1 160535406 160535406 G A CD84 Missense_Mutation p.S59F 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 1 169761757 169761757 C T METTL18 Silent p.K360K 0.27 TCGA-CV-7427-01 1 17084717 17084717 G C MST1L RNA 0.08 TCGA-CV-7427-01 1 175299264 175299264 C A TNR Nonsense_Mutation p.E1247* 0.28 TCGA-CV-7427-01 1 179041145 179041145 G A FAM20B Missense_Mutation p.V366M 0.29 deleterious(0) possibly_damaging(0.881) TCGA-CV-7427-01 1 180166602 180166602 C T QSOX1 3'UTR 0.26 TCGA-CV-7427-01 1 19478158 19478158 C T UBR4 Missense_Mutation p.D2398N 0.28 probably_damaging(0.94) TCGA-CV-7427-01 1 20474786 20474786 C T PLA2G2F Silent p.F176F 0.14 TCGA-CV-7427-01 1 205238423 205238423 G C TMCC2 Missense_Mutation p.E365Q 0.47 tolerated(0.09) possibly_damaging(0.705) TCGA-CV-7427-01 1 207643212 207643212 G A CR2 Silent p.Q330Q 0.29 TCGA-CV-7427-01 1 210415084 210415084 G A SERTAD4 Missense_Mutation p.G158D 0.29 tolerated(0.15) benign(0.356) TCGA-CV-7427-01 1 215368397 215368397 G A KCNK2 Missense_Mutation p.D309N 0.26 tolerated(0.57) probably_damaging(0.966) TCGA-CV-7427-01 1 22456196 22456196 C G WNT4 Missense_Mutation p.E76Q 0.26 tolerated(0.18) benign(0.1) TCGA-CV-7427-01 1 227842557 227842557 T G ZNF678 Missense_Mutation p.I202M 0.26 deleterious(0.01) probably_damaging(0.921) TCGA-CV-7427-01 1 27942093 27942093 C T FGR Silent p.V290V 0.26 TCGA-CV-7427-01 1 28793131 28793131 C T PHACTR4 Silent p.V235V 0.23 TCGA-CV-7427-01 1 32632895 32632895 C G KPNA6 Missense_Mutation p.I414M 0.22 deleterious(0.01) possibly_damaging(0.842) TCGA-CV-7427-01 1 33263435 33263435 C T YARS Missense_Mutation p.E174K 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 1 34329745 34329745 C T HMGB4 5'UTR 0.11 TCGA-CV-7427-01 1 3679939 3679939 G A CCDC27 Missense_Mutation p.E408K 0.13 deleterious(0.01) possibly_damaging(0.801) TCGA-CV-7427-01 1 37941518 37941518 G C ZC3H12A Missense_Mutation p.D141H 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 1 38040301 38040301 C G GNL2 Missense_Mutation p.E423Q 0.41 deleterious(0) probably_damaging(0.94) TCGA-CV-7427-01 1 38323027 38323027 G C MTF1 Missense_Mutation p.Q102E 0.22 tolerated(0.11) benign(0.287) TCGA-CV-7427-01 1 43630388 43630388 C T EBNA1BP2 Missense_Mutation p.D321N 0.18 tolerated(0.93) benign(0.005) TCGA-CV-7427-01 1 44069508 44069508 G A PTPRF Silent p.K895K 0.30 TCGA-CV-7427-01 1 44069632 44069632 G T PTPRF Missense_Mutation p.D937Y 0.26 deleterious(0.04) possibly_damaging(0.905) TCGA-CV-7427-01 1 44069731 44069731 G C PTPRF Missense_Mutation p.D970H 0.25 deleterious(0.03) possibly_damaging(0.858) TCGA-CV-7427-01 1 44456097 44456097 C T B4GALT2 Missense_Mutation p.P395S 0.20 deleterious(0.02) benign(0.034) TCGA-CV-7427-01 1 44456112 44456112 C A B4GALT2 Silent p.R400R 0.17 TCGA-CV-7427-01 1 54426051 54426051 G A LRRC42 Missense_Mutation p.D210N 0.34 tolerated(0.35) probably_damaging(1) TCGA-CV-7427-01 1 60334000 60334000 G C HOOK1 Missense_Mutation p.E642Q 0.18 tolerated(0.16) possibly_damaging(0.521) TCGA-CV-7427-01 1 62703988 62703988 C T KANK4 Silent p.L983L 0.18 TCGA-CV-7427-01 1 67236139 67236139 G A TCTEX1D1 Silent p.Q63Q 0.24 TCGA-CV-7427-01 1 75055435 75055435 C T C1orf173 Missense_Mutation p.E686K 0.12 tolerated(0.23) benign(0.059) TCGA-CV-7427-01 1 75171909 75171909 G C CRYZ 3'UTR 0.23 TCGA-CV-7427-01 1 82456919 82456919 G A LPHN2 3'UTR 0.39 TCGA-CV-7427-01 1 86289244 86289244 C T COL24A1 Missense_Mutation p.G1255E 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-7427-01 1 86939133 86939133 G C CLCA1 Missense_Mutation p.E66Q 0.12 tolerated(0.14) benign(0.094) TCGA-CV-7427-01 1 89486310 89486310 G C GBP3 Missense_Mutation p.S32C 0.24 deleterious(0.02) possibly_damaging(0.834) TCGA-CV-7427-01 1 94027770 94027770 G C BCAR3 3'UTR 0.18 TCGA-CV-7427-01 1 94037340 94037340 C T BCAR3 Missense_Mutation p.E621K 0.06 deleterious(0) benign(0.326) TCGA-CV-7427-01 1 9795145 9795145 C G CLSTN1 Silent p.L657L 0.21 TCGA-CV-7427-01 20 1559329 1559329 C G RP4-576H24.4 Missense_Mutation p.E29Q 0.06 tolerated(0.25) benign(0.098) TCGA-CV-7427-01 20 25282852 25282852 C G ABHD12 Intron 0.20 TCGA-CV-7427-01 20 30584822 30584822 C G XKR7 Silent p.V434V 0.27 TCGA-CV-7427-01 20 31022345 31022345 C T ASXL1 Silent p.G610G 0.20 TCGA-CV-7427-01 20 3171833 3171833 C T DDRGK1 Intron 0.20 TCGA-CV-7427-01 20 35827507 35827507 T A RPN2 Missense_Mutation p.S120T 0.22 tolerated(0.16) benign(0.402) TCGA-CV-7427-01 20 35827508 35827508 C A RPN2 Nonsense_Mutation p.S120* 0.22 TCGA-CV-7427-01 20 42275663 42275663 C T IFT52 3'UTR 0.12 TCGA-CV-7427-01 20 43047076 43047076 C T HNF4A Silent p.L220L 0.23 TCGA-CV-7427-01 20 43379022 43379022 C G KCNK15 Missense_Mutation p.S179W 0.16 deleterious(0) possibly_damaging(0.749) TCGA-CV-7427-01 20 47582443 47582443 G C ARFGEF2 Missense_Mutation p.E314D 0.16 tolerated(0.44) benign(0.001) TCGA-CV-7427-01 20 49510683 49510683 G C ADNP Missense_Mutation p.Q190E 0.23 deleterious(0.03) possibly_damaging(0.527) TCGA-CV-7427-01 20 50049030 50049030 G A NFATC2 Nonsense_Mutation p.Q766* 0.22 TCGA-CV-7427-01 21 15561416 15561416 C G LIPI Missense_Mutation p.R145T 0.10 tolerated(0.48) probably_damaging(0.996) TCGA-CV-7427-01 21 19725330 19725331 - A TMPRSS15 Frame_Shift_Ins p.C354Lfs*9 0.18 TCGA-CV-7427-01 21 46226908 46226908 C T SUMO3 Silent p.T90T 0.20 TCGA-CV-7427-01 21 47546045 47546045 C G COL6A2 Silent p.L772L 0.25 TCGA-CV-7427-01 22 21104247 21104247 C T PI4KA Missense_Mutation p.M1063I 0.21 tolerated(0.06) benign(0.012) TCGA-CV-7427-01 22 23495243 23495243 G A RAB36 Missense_Mutation p.R150Q 0.19 deleterious(0.04) probably_damaging(0.979) TCGA-CV-7427-01 22 24759250 24759250 C T SPECC1L Missense_Mutation p.S922L 0.32 tolerated(0.33) benign(0.115) TCGA-CV-7427-01 22 30660370 30660370 C T OSM Silent p.L87L 0.31 TCGA-CV-7427-01 22 36661869 36661869 G C APOL1 Missense_Mutation p.M345I 0.11 tolerated(0.06) benign(0.019) TCGA-CV-7427-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.20 probably_damaging(1) TCGA-CV-7427-01 22 50356510 50356510 C T PIM3 Missense_Mutation p.P264S 0.26 tolerated(0.49) benign(0.001) TCGA-CV-7427-01 22 50656779 50656779 G C TUBGCP6 Missense_Mutation p.F1669L 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-CV-7427-01 22 50724643 50724643 G C PLXNB2 Missense_Mutation p.F612L 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7427-01 2 101010229 101010229 G C CHST10 Missense_Mutation p.F183L 0.26 tolerated(0.18) benign(0.349) TCGA-CV-7427-01 2 108489124 108489124 C G RGPD4 Nonsense_Mutation p.S1555* 0.16 TCGA-CV-7427-01 2 130911298 130911298 C T SMPD4 Missense_Mutation p.E663K 0.12 tolerated(0.1) probably_damaging(0.953) TCGA-CV-7427-01 2 141259290 141259290 G A LRP1B Missense_Mutation p.S2939F 0.12 benign(0.012) TCGA-CV-7427-01 2 15415720 15415720 G A NBAS Missense_Mutation p.P1871L 0.21 tolerated(0.07) benign(0.036) TCGA-CV-7427-01 2 166020352 166020352 G A SCN3A Intron 0.26 TCGA-CV-7427-01 2 166533010 166533010 G T CSRNP3 Missense_Mutation p.K199N 0.26 deleterious(0) probably_damaging(0.996) TCGA-CV-7427-01 2 176982029 176982029 G C HOXD10 Missense_Mutation p.Q156H 0.12 deleterious(0) probably_damaging(0.991) TCGA-CV-7427-01 2 18113476 18113476 C G KCNS3 Missense_Mutation p.P401A 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 2 191859795 191859795 G C STAT1 Silent p.L312L 0.12 TCGA-CV-7427-01 2 191859849 191859849 G C STAT1 Missense_Mutation p.I294M 0.12 deleterious(0.02) probably_damaging(0.99) TCGA-CV-7427-01 2 204000956 204000956 C G NBEAL1 Missense_Mutation p.S1428C 0.20 deleterious(0) possibly_damaging(0.738) TCGA-CV-7427-01 2 219000650 219000650 C T CXCR2 3'UTR 0.22 TCGA-CV-7427-01 2 220102389 220102389 G C GLB1L Missense_Mutation p.L512V 0.28 deleterious(0) probably_damaging(0.997) TCGA-CV-7427-01 2 220111834 220111834 G C STK16 Splice_Site p.X103_splice 0.26 TCGA-CV-7427-01 2 227660640 227660640 C T IRS1 Missense_Mutation p.E939K 0.18 tolerated(0.12) possibly_damaging(0.696) TCGA-CV-7427-01 2 233344817 233344817 G C ECEL1 3'UTR 0.22 TCGA-CV-7427-01 2 233710554 233710554 G A GIGYF2 Missense_Mutation p.E1161K 0.21 unknown(0) TCGA-CV-7427-01 2 234104054 234104054 A G INPP5D Missense_Mutation p.K857R 0.22 tolerated(0.09) benign(0.041) TCGA-CV-7427-01 2 234888876 234888876 G T TRPM8 Silent p.V800V 0.18 TCGA-CV-7427-01 2 242194963 242194963 C G HDLBP Silent p.V302V 0.21 TCGA-CV-7427-01 2 25965130 25965130 G A ASXL2 Missense_Mutation p.S1359L 0.30 deleterious(0) probably_damaging(0.998) TCGA-CV-7427-01 2 32605289 32605289 C T BIRC6 Silent p.F192F 0.21 TCGA-CV-7427-01 2 37028511 37028511 G C VIT Missense_Mutation p.E376Q 0.28 deleterious(0.01) benign(0.364) TCGA-CV-7427-01 2 37480245 37480245 C G PRKD3 3'UTR 0.22 TCGA-CV-7427-01 2 55561259 55561259 C T CCDC88A Missense_Mutation p.D900N 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-CV-7427-01 2 61300626 61300626 C G KIAA1841 Missense_Mutation p.S124C 0.22 deleterious(0.01) possibly_damaging(0.785) TCGA-CV-7427-01 2 69045102 69045102 G A ARHGAP25 Missense_Mutation p.E327K 0.28 deleterious(0.02) possibly_damaging(0.534) TCGA-CV-7427-01 2 74757145 74757145 G A HTRA2 Silent p.P4P 0.21 TCGA-CV-7427-01 2 74757169 74757169 G C HTRA2 Missense_Mutation p.W12C 0.18 deleterious_low_confidence(0.04) benign(0.006) TCGA-CV-7427-01 2 75100416 75100416 C G HK2 Nonsense_Mutation p.S170* 0.14 TCGA-CV-7427-01 2 84517923 84517923 C T FUNDC2P2 RNA 0.15 TCGA-CV-7427-01 2 8871880 8871880 G C KIDINS220 Nonsense_Mutation p.S1429* 0.23 TCGA-CV-7427-01 2 98409038 98409038 C G TMEM131 Missense_Mutation p.E1319Q 0.38 tolerated_low_confidence(0.26) benign(0.176) TCGA-CV-7427-01 3 10264469 10264469 G A IRAK2 Missense_Mutation p.R388Q 0.25 deleterious(0) probably_damaging(0.975) TCGA-CV-7427-01 3 108380811 108380811 C T DZIP3 Nonsense_Mutation p.Q763* 0.29 TCGA-CV-7427-01 3 109026903 109026903 C G DPPA2 Missense_Mutation p.E212Q 0.44 deleterious(0.01) benign(0.417) TCGA-CV-7427-01 3 119135106 119135106 G C ARHGAP31 Missense_Mutation p.E1444Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-CV-7427-01 3 121410602 121410602 C G GOLGB1 Missense_Mutation p.E2537Q 0.29 possibly_damaging(0.833) TCGA-CV-7427-01 3 121411229 121411229 C G GOLGB1 Missense_Mutation p.D2328H 0.25 probably_damaging(0.935) TCGA-CV-7427-01 3 124731790 124731790 C T HEG1 Missense_Mutation p.G878E 0.21 tolerated(0.16) benign(0.035) TCGA-CV-7427-01 3 127298673 127298673 G A TPRA1 Silent p.L56L 0.08 TCGA-CV-7427-01 3 129324855 129324855 C T PLXND1 Missense_Mutation p.G210S 0.19 deleterious(0.03) probably_damaging(0.942) TCGA-CV-7427-01 3 133647141 133647141 G C C3orf36 3'UTR 0.11 TCGA-CV-7427-01 3 141272764 141272764 C T RASA2 Missense_Mutation p.S198F 0.24 deleterious(0) probably_damaging(0.913) TCGA-CV-7427-01 3 14706577 14706577 G A CCDC174 Missense_Mutation p.M176I 0.08 deleterious(0) benign(0.063) TCGA-CV-7427-01 3 161063858 161063858 C T SPTSSB 3'UTR 0.24 TCGA-CV-7427-01 3 164733862 164733862 G A SI Nonsense_Mutation p.Q1256* 0.24 TCGA-CV-7427-01 3 164906954 164906954 G C SLITRK3 Silent p.V555V 0.07 TCGA-CV-7427-01 3 169572619 169572619 C G LRRC31 Missense_Mutation p.D325H 0.19 tolerated(0.06) possibly_damaging(0.77) TCGA-CV-7427-01 3 172607255 172607255 G A SPATA16 3'UTR 0.33 TCGA-CV-7427-01 3 180327993 180327993 G T TTC14 Missense_Mutation p.R659I 0.17 deleterious_low_confidence(0) unknown(0) TCGA-CV-7427-01 3 182683478 182683478 C T DCUN1D1 Missense_Mutation p.E23K 0.24 deleterious(0.05) benign(0.033) TCGA-CV-7427-01 3 184039824 184039824 C T EIF4G1 Silent p.L491L 0.28 TCGA-CV-7427-01 3 184039888 184039888 C G EIF4G1 Missense_Mutation p.Q513E 0.20 tolerated(0.1) possibly_damaging(0.769) TCGA-CV-7427-01 3 184044351 184044351 C T EIF4G1 Missense_Mutation p.P1094S 0.27 deleterious(0) benign(0.258) TCGA-CV-7427-01 3 185304089 185304089 C T SENP2 5'UTR 0.17 TCGA-CV-7427-01 3 195965715 195965715 C T PCYT1A Silent p.P316P 0.20 TCGA-CV-7427-01 3 23932140 23932140 G C UBE2E1 3'UTR 0.33 TCGA-CV-7427-01 3 24003755 24003755 C G NR1D2 Missense_Mutation p.Q269E 0.24 deleterious(0.02) probably_damaging(0.952) TCGA-CV-7427-01 3 24003916 24003916 C T NR1D2 Silent p.F322F 0.24 TCGA-CV-7427-01 3 37343673 37343673 C T GOLGA4 Intron 0.30 TCGA-CV-7427-01 3 3887186 3887186 T C LRRN1 Silent p.L287L 0.17 TCGA-CV-7427-01 3 40223839 40223839 G A MYRIP Silent p.K334K 0.23 TCGA-CV-7427-01 3 47448093 47448093 C G PTPN23 Silent p.A250A 0.24 TCGA-CV-7427-01 3 47484421 47484421 G A SCAP Silent p.L21L 0.17 TCGA-CV-7427-01 3 50334679 50334679 C A NAT6 Silent p.L94L 0.17 TCGA-CV-7427-01 3 53834389 53834389 C T CACNA1D Silent p.F1699F 0.25 TCGA-CV-7427-01 3 57857389 57857389 G A SLMAP Missense_Mutation p.D388N 0.15 tolerated(0.07) benign(0.003) TCGA-CV-7427-01 3 64582503 64582503 C T ADAMTS9 Intron 0.23 TCGA-CV-7427-01 3 8940660 8940660 C A RAD18 Nonsense_Mutation p.E414* 0.21 TCGA-CV-7427-01 4 123109097 123109097 C G KIAA1109 Missense_Mutation p.I225M 0.19 benign(0.03) TCGA-CV-7427-01 4 123283407 123283407 G A KIAA1109 3'UTR 0.24 TCGA-CV-7427-01 4 123844435 123844435 G A SPATA5 Silent p.L46L 0.29 TCGA-CV-7427-01 4 126238052 126238052 G T FAT4 Silent p.S162S 0.11 TCGA-CV-7427-01 4 140468192 140468192 C T SETD7 Missense_Mutation p.D18N 0.25 deleterious(0.01) possibly_damaging(0.549) TCGA-CV-7427-01 4 156281397 156281397 C A MAP9 Missense_Mutation p.D325Y 0.24 deleterious(0.01) possibly_damaging(0.785) TCGA-CV-7427-01 4 187455394 187455394 G C MTNR1A Missense_Mutation p.L168V 0.18 tolerated(0.05) benign(0.14) TCGA-CV-7427-01 4 187549762 187549763 - A FAT1 Frame_Shift_Ins p.Q1494Afs*4 0.12 TCGA-CV-7427-01 4 187628329 187628329 G A FAT1 Nonsense_Mutation p.R885* 0.17 TCGA-CV-7427-01 4 25676182 25676182 C T SLC34A2 Silent p.I463I 0.20 TCGA-CV-7427-01 4 3317944 3317944 C T RGS12 Missense_Mutation p.S16L 0.22 deleterious(0.03) benign(0) TCGA-CV-7427-01 4 48490651 48490651 G C SLC10A4 Missense_Mutation p.G337R 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 4 62679581 62679581 C G LPHN3 Missense_Mutation p.S417C 0.13 deleterious(0.04) possibly_damaging(0.784) TCGA-CV-7427-01 4 70710039 70710039 T C SULT1E1 Missense_Mutation p.I204M 0.11 tolerated(0.1) benign(0.042) TCGA-CV-7427-01 4 74853901 74853901 G A PPBP 5'UTR 0.32 TCGA-CV-7427-01 4 74904074 74904074 G A CXCL3 Missense_Mutation p.H53Y 0.19 deleterious(0) possibly_damaging(0.665) TCGA-CV-7427-01 4 755157 755157 C G PCGF3 Missense_Mutation p.L185V 0.25 tolerated(0.06) benign(0.388) TCGA-CV-7427-01 4 844827 844827 G A GAK Missense_Mutation p.S1185F 0.24 deleterious(0.01) possibly_damaging(0.86) TCGA-CV-7427-01 5 102472491 102472491 C T PPIP5K2 Silent p.I122I 0.23 TCGA-CV-7427-01 5 107700445 107700445 G C FBXL17 Silent p.L456L 0.23 TCGA-CV-7427-01 5 112418582 112418582 C T MCC Missense_Mutation p.E587K 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-CV-7427-01 5 127637197 127637197 C G FBN2 Missense_Mutation p.D1975H 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7427-01 5 132439956 132439956 C G HSPA4 Nonsense_Mutation p.S784* 0.21 TCGA-CV-7427-01 5 138707763 138707763 C T SLC23A1 Missense_Mutation p.D581N 0.21 tolerated(0.51) benign(0.001) TCGA-CV-7427-01 5 138979957 138979957 G C UBE2D2 Missense_Mutation p.E9Q 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7427-01 5 140625334 140625334 G A PCDHB15 Missense_Mutation p.G63E 0.21 tolerated_low_confidence(0.21) benign(0.349) TCGA-CV-7427-01 5 140743929 140743929 G A PCDHGA5 Missense_Mutation p.G11E 0.19 tolerated_low_confidence(0.87) benign(0.002) TCGA-CV-7427-01 5 141020092 141020092 G A FCHSD1 3'UTR 0.50 TCGA-CV-7427-01 5 147715230 147715230 C T SPINK9 Silent p.F18F 0.10 TCGA-CV-7427-01 5 150275396 150275396 C G ZNF300 Missense_Mutation p.E485Q 0.19 deleterious(0.04) benign(0.359) TCGA-CV-7427-01 5 153026577 153026577 C T GRIA1 Missense_Mutation p.L114F 0.26 tolerated(0.63) probably_damaging(1) TCGA-CV-7427-01 5 153390822 153390822 G A FAM114A2 Silent p.S324S 0.15 TCGA-CV-7427-01 5 154397020 154397020 G C KIF4B Missense_Mutation p.E1201Q 0.22 tolerated_low_confidence(0.1) benign(0.273) TCGA-CV-7427-01 5 161322869 161322869 G A GABRA1 Missense_Mutation p.E352K 0.29 tolerated(0.6) probably_damaging(0.989) TCGA-CV-7427-01 5 161324342 161324342 C A GABRA1 Missense_Mutation p.L429M 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7427-01 5 162887134 162887134 C G NUDCD2 5'UTR 0.32 TCGA-CV-7427-01 5 174869513 174869513 G A DRD1 Missense_Mutation p.S197L 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-7427-01 5 176026823 176026823 C T GPRIN1 Missense_Mutation p.E5K 0.16 deleterious(0) probably_damaging(0.986) TCGA-CV-7427-01 5 176709547 176709547 G C NSD1 Missense_Mutation p.D1992H 0.25 deleterious(0.03) benign(0.42) TCGA-CV-7427-01 5 176709577 176709577 G C NSD1 Missense_Mutation p.D2002H 0.25 deleterious(0) probably_damaging(0.998) TCGA-CV-7427-01 5 33455163 33455163 C T TARS Silent p.L222L 0.31 TCGA-CV-7427-01 5 35709234 35709234 G C SPEF2 Intron 0.18 TCGA-CV-7427-01 5 36976261 36976261 C G NIPBL Missense_Mutation p.Q418E 0.27 tolerated_low_confidence(0.1) benign(0.037) TCGA-CV-7427-01 5 65459693 65459693 G C SREK1 Missense_Mutation p.E277Q 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7427-01 5 70841044 70841044 G A BDP1 Missense_Mutation p.E2248K 0.19 tolerated(0.07) benign(0.168) TCGA-CV-7427-01 6 10404933 10404933 G C TFAP2A Missense_Mutation p.S191C 0.15 tolerated(0.07) possibly_damaging(0.502) TCGA-CV-7427-01 6 111688626 111688626 G A REV3L Missense_Mutation p.S2122F 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7427-01 6 111880462 111880462 C G TRAF3IP2 3'UTR 0.23 TCGA-CV-7427-01 6 143486275 143486275 G A AIG1 Silent p.P118P 0.17 TCGA-CV-7427-01 6 151939129 151939129 G A CCDC170 Silent p.V665V 0.06 TCGA-CV-7427-01 6 160164726 160164726 G T WTAP Nonsense_Mutation p.E59* 0.20 TCGA-CV-7427-01 6 160906954 160906954 C G LPAL2 RNA 0.10 TCGA-CV-7427-01 6 169623478 169623478 C G THBS2 Missense_Mutation p.E956Q 0.16 tolerated(0.4) possibly_damaging(0.835) TCGA-CV-7427-01 6 170873691 170873691 C T TBP Missense_Mutation p.R186C 0.23 deleterious(0) possibly_damaging(0.775) TCGA-CV-7427-01 6 24145891 24145891 A G NRSN1 Missense_Mutation p.D102G 0.50 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 6 25862525 25862525 G C SLC17A3 Missense_Mutation p.S80C 0.07 deleterious(0) possibly_damaging(0.84) TCGA-CV-7427-01 6 26017460 26017460 C T HIST1H1A Silent p.K167K 0.20 TCGA-CV-7427-01 6 26225488 26225488 G A HIST1H3E Missense_Mutation p.V36M 0.55 deleterious_low_confidence(0.03) benign(0.011) TCGA-CV-7427-01 6 27114494 27114494 C G HIST1H2BK Missense_Mutation p.K28N 0.12 deleterious_low_confidence(0) unknown(0) TCGA-CV-7427-01 6 2954925 2954925 G C SERPINB6 Missense_Mutation p.Q111E 0.19 tolerated(0.25) benign(0.057) TCGA-CV-7427-01 6 29912344 29912344 G A HLA-A Silent p.V321V 0.32 TCGA-CV-7427-01 6 31525604 31525604 G A NFKBIL1 Silent p.Q178Q 0.11 TCGA-CV-7427-01 6 31548552 31548552 G A LTB Silent p.I223I 0.23 TCGA-CV-7427-01 6 31606973 31606973 C T BAG6 Missense_Mutation p.E1112K 0.12 deleterious(0.02) probably_damaging(0.952) TCGA-CV-7427-01 6 31937512 31937512 G T SKIV2L 3'UTR 0.27 TCGA-CV-7427-01 6 31974817 31974817 C T AL645922.1 Intron 0.25 TCGA-CV-7427-01 6 32782246 32782246 C T HLA-DOB Missense_Mutation p.R165K 0.23 tolerated(0.54) benign(0.012) TCGA-CV-7427-01 6 33284041 33284041 G A ZBTB22 Missense_Mutation p.S218L 0.11 tolerated(0.1) benign(0.026) TCGA-CV-7427-01 6 41250194 41250194 G C TREM1 Missense_Mutation p.I115M 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-7427-01 6 42666224 42666224 G A PRPH2 Missense_Mutation p.R284C 0.35 deleterious(0) probably_damaging(0.997) TCGA-CV-7427-01 6 46660213 46660213 G T TDRD6 Nonsense_Mutation p.E1450* 0.24 TCGA-CV-7427-01 6 49704110 49704110 C T CRISP3 Silent p.L84L 0.31 TCGA-CV-7427-01 6 49754450 49754450 G A PGK2 Nonsense_Mutation p.R151* 0.29 TCGA-CV-7427-01 6 52053869 52053869 G C IL17A Missense_Mutation p.E83Q 0.21 deleterious(0.04) possibly_damaging(0.828) TCGA-CV-7427-01 6 52659022 52659022 C T GSTA1 Missense_Mutation p.M105I 0.28 tolerated(0.06) possibly_damaging(0.517) TCGA-CV-7427-01 6 54806332 54806332 C G FAM83B Missense_Mutation p.Q855E 0.18 tolerated(0.19) benign(0.021) TCGA-CV-7427-01 6 7861772 7861772 C G BMP6 Missense_Mutation p.L316V 0.24 tolerated(0.52) benign(0.441) TCGA-CV-7427-01 7 102097817 102097817 C T ALKBH4 3'UTR 0.14 TCGA-CV-7427-01 7 104783666 104783666 C G SRPK2 Missense_Mutation p.E309Q 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-CV-7427-01 7 112124970 112124970 C T LSMEM1 Silent p.L33L 0.25 TCGA-CV-7427-01 7 12254482 12254482 G A TMEM106B Missense_Mutation p.D16N 0.26 tolerated(0.2) benign(0.125) TCGA-CV-7427-01 7 123185709 123185709 C T NDUFA5 Missense_Mutation p.E69K 0.20 deleterious(0.01) possibly_damaging(0.798) TCGA-CV-7427-01 7 129841908 129841908 C T TMEM209 Missense_Mutation p.D119N 0.21 tolerated(0.44) benign(0.16) TCGA-CV-7427-01 7 141408625 141408625 G A WEE2 Missense_Mutation p.E23K 0.23 tolerated(0.08) benign(0.132) TCGA-CV-7427-01 7 142605909 142605909 G C TRPV5 Nonsense_Mutation p.S654* 0.22 TCGA-CV-7427-01 7 149482281 149482281 C G SSPO RNA 0.18 TCGA-CV-7427-01 7 150845999 150845999 G A GBX1 Missense_Mutation p.P257S 0.26 tolerated(0.63) benign(0.028) TCGA-CV-7427-01 7 21678666 21678666 G T DNAH11 Nonsense_Mutation p.G1648* 0.15 TCGA-CV-7427-01 7 23768842 23768842 G C STK31 Missense_Mutation p.D153H 0.32 tolerated(0.07) benign(0.365) TCGA-CV-7427-01 7 29552289 29552289 G A CHN2 Missense_Mutation p.D449N 0.20 tolerated(0.16) probably_damaging(0.995) TCGA-CV-7427-01 7 31614170 31614170 G T CCDC129 Nonsense_Mutation p.E164* 0.21 TCGA-CV-7427-01 7 32612918 32612918 G C AVL9 Missense_Mutation p.E486D 0.29 tolerated(0.26) benign(0.045) TCGA-CV-7427-01 7 48147942 48147942 G T UPP1 Silent p.L307L 0.26 TCGA-CV-7427-01 7 55241688 55241688 C G EGFR Missense_Mutation p.F712L 0.25 tolerated(1) benign(0.014) TCGA-CV-7427-01 7 6089666 6089666 C G EIF2AK1 Missense_Mutation p.Q96H 0.20 tolerated(0.07) benign(0.033) TCGA-CV-7427-01 7 6426892 6426892 C A RAC1 Missense_Mutation p.P29T 0.26 deleterious(0.01) probably_damaging(0.965) TCGA-CV-7427-01 7 7273948 7273948 G A C1GALT1 5'UTR 0.20 TCGA-CV-7427-01 7 77558594 77558594 C G PHTF2 Missense_Mutation p.Q396E 0.26 tolerated(1) benign(0.149) TCGA-CV-7427-01 7 81598239 81598239 C T CACNA2D1 Missense_Mutation p.E787K 0.16 deleterious(0.04) benign(0.108) TCGA-CV-7427-01 7 82586178 82586178 C T PCLO Missense_Mutation p.G1364E 0.19 unknown(0) TCGA-CV-7427-01 7 87179592 87179592 C G ABCB1 Silent p.L415L 0.18 TCGA-CV-7427-01 7 98992106 98992106 C G ARPC1B Missense_Mutation p.I371M 0.23 deleterious(0.02) probably_damaging(0.982) TCGA-CV-7427-01 7 99489924 99489924 C T TRIM4 Silent p.G455G 0.18 TCGA-CV-7427-01 7 99751027 99751027 C T LAMTOR4 Missense_Mutation p.S30F 0.22 deleterious(0) possibly_damaging(0.748) TCGA-CV-7427-01 8 100779029 100779029 G A VPS13B Missense_Mutation p.E2385K 0.28 tolerated(0.09) possibly_damaging(0.636) TCGA-CV-7427-01 8 100990142 100990142 C T RGS22 Intron 0.23 TCGA-CV-7427-01 8 104337587 104337587 G C FZD6 Missense_Mutation p.G418A 0.14 deleterious(0.01) probably_damaging(1) TCGA-CV-7427-01 8 10755509 10755509 C G XKR6 Missense_Mutation p.D627H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7427-01 8 120809951 120809951 C T TAF2 Missense_Mutation p.D310N 0.07 deleterious(0.04) probably_damaging(0.945) TCGA-CV-7427-01 8 121823703 121823703 G C SNTB1 Missense_Mutation p.I127M 0.34 deleterious(0) probably_damaging(1) TCGA-CV-7427-01 8 142477621 142477621 C G MROH5 3'UTR 0.18 TCGA-CV-7427-01 8 1728810 1728810 G A CLN8 3'UTR 0.25 TCGA-CV-7427-01 8 23538827 23538827 G C NKX3-1 Silent p.A204A 0.08 TCGA-CV-7427-01 8 37687368 37687368 G T GPR124 Splice_Site p.X185_splice 0.21 TCGA-CV-7427-01 8 39695769 39695769 C T ADAM2 5'UTR 0.25 TCGA-CV-7427-01 8 49832516 49832516 C G SNAI2 Missense_Mutation p.K188N 0.12 tolerated(0.12) benign(0.05) TCGA-CV-7427-01 8 67759505 67759505 G C SGK3 Silent p.V384V 0.43 TCGA-CV-7427-01 8 67926687 67926687 G C PPP1R42 Silent p.L90L 0.16 TCGA-CV-7427-01 8 68005835 68005835 G C CSPP1 Missense_Mutation p.E157Q 0.45 tolerated(0.08) benign(0.107) TCGA-CV-7427-01 8 69633646 69633646 G C C8orf34 Missense_Mutation p.E460Q 0.39 tolerated(0.13) benign(0.056) TCGA-CV-7427-01 8 77766385 77766385 G A ZFHX4 Missense_Mutation p.A2410T 0.20 benign(0.001) TCGA-CV-7427-01 8 81899695 81899695 C G PAG1 Missense_Mutation p.D62H 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-7427-01 8 94746486 94746486 G A RBM12B Missense_Mutation p.S718L 0.04 tolerated_low_confidence(0.29) benign(0.004) TCGA-CV-7427-01 8 97299316 97299316 C T PTDSS1 Missense_Mutation p.S128F 0.14 deleterious(0.05) benign(0.438) TCGA-CV-7427-01 9 101765755 101765755 G C COL15A1 Silent p.A362A 0.15 TCGA-CV-7427-01 9 102769866 102769866 C T ERP44 Missense_Mutation p.E290K 0.22 deleterious(0.04) benign(0.111) TCGA-CV-7427-01 9 114134893 114134893 G A KIAA0368 Silent p.I1626I 0.15 TCGA-CV-7427-01 9 115805660 115805660 G C ZFP37 Missense_Mutation p.S413C 0.23 deleterious(0.02) benign(0.117) TCGA-CV-7427-01 9 117568332 117568332 G C TNFSF15 5'UTR 0.13 TCGA-CV-7427-01 9 117889 117889 G A FOXD4 Silent p.S77S 0.22 TCGA-CV-7427-01 9 119460354 119460354 C T TRIM32 Silent p.F111F 0.19 TCGA-CV-7427-01 9 119976688 119976688 G C ASTN2 Missense_Mutation p.L322V 0.12 tolerated_low_confidence(0.06) unknown(0) TCGA-CV-7427-01 9 129851244 129851244 G A ANGPTL2 Nonsense_Mutation p.R486* 0.16 TCGA-CV-7427-01 9 130486622 130486622 G A TTC16 Missense_Mutation p.G366R 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7427-01 9 130569916 130569916 C T FPGS Silent p.L231L 0.16 TCGA-CV-7427-01 9 131084583 131084583 C G TRUB2 Silent p.L35L 0.10 TCGA-CV-7427-01 9 132566591 132566591 C T TOR1B Missense_Mutation p.H147Y 0.23 deleterious(0.02) possibly_damaging(0.837) TCGA-CV-7427-01 9 137990304 137990304 G C OLFM1 Missense_Mutation p.R192T 0.22 deleterious(0.01) possibly_damaging(0.587) TCGA-CV-7427-01 9 139402742 139402742 C T NOTCH1 Nonsense_Mutation p.W1089* 0.31 TCGA-CV-7427-01 9 139686222 139686222 C T TMEM141 Silent p.F38F 0.40 TCGA-CV-7427-01 9 140446891 140446891 G C MRPL41 Missense_Mutation p.E120Q 0.31 tolerated(0.06) probably_damaging(0.993) TCGA-CV-7427-01 9 140622883 140622883 C G EHMT1 Missense_Mutation p.S242C 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.553) TCGA-CV-7427-01 9 18474122 18474122 C T ADAMTSL1 5'UTR 0.53 TCGA-CV-7427-01 9 19619622 19619622 G C SLC24A2 Missense_Mutation p.I346M 0.13 deleterious(0) possibly_damaging(0.459) TCGA-CV-7427-01 9 21409280 21409280 G A IFNA8 Silent p.R35R 0.25 TCGA-CV-7427-01 9 33038791 33038791 G A DNAJA1 Missense_Mutation p.E362K 0.15 tolerated(0.11) benign(0.009) TCGA-CV-7427-01 9 35660981 35660981 G A CCDC107 Missense_Mutation p.E217K 0.17 tolerated(0.06) probably_damaging(0.956) TCGA-CV-7427-01 9 37486584 37486584 C T POLR1E Intron 0.42 TCGA-CV-7427-01 9 71152191 71152191 C T TMEM252 Missense_Mutation p.R166Q 0.08 tolerated(1) benign(0) TCGA-CV-7427-01 9 77354741 77354741 G A TRPM6 Silent p.L1795L 0.42 TCGA-CV-7427-01 9 88642728 88642728 C T GOLM1 3'UTR 0.39 TCGA-CV-7427-01 X 100382652 100382652 G C CENPI Missense_Mutation p.E358Q 0.29 tolerated(0.06) possibly_damaging(0.796) TCGA-CV-7427-01 X 100505953 100505953 C T DRP2 Silent p.V582V 0.19 TCGA-CV-7427-01 X 100911314 100911314 G A ARMCX2 Nonsense_Mutation p.Q421* 0.24 TCGA-CV-7427-01 X 102004986 102004986 C T BHLHB9 Missense_Mutation p.P355S 0.06 tolerated(0.06) probably_damaging(1) TCGA-CV-7427-01 X 103498857 103498857 G A ESX1 Nonsense_Mutation p.Q162* 0.25 TCGA-CV-7427-01 X 107976960 107976960 G A IRS4 Missense_Mutation p.S872L 0.22 tolerated(0.11) benign(0.184) TCGA-CV-7427-01 X 107976981 107976981 G A IRS4 Missense_Mutation p.S865L 0.22 deleterious(0) benign(0.184) TCGA-CV-7427-01 X 11187648 11187648 C T ARHGAP6 Missense_Mutation p.E596K 0.22 tolerated(0.07) possibly_damaging(0.621) TCGA-CV-7427-01 X 117526862 117526862 G C WDR44 Missense_Mutation p.D152H 0.22 tolerated_low_confidence(0.07) benign(0.344) TCGA-CV-7427-01 X 12837668 12837668 G C PRPS2 Missense_Mutation p.L194F 0.22 deleterious(0) probably_damaging(0.972) TCGA-CV-7427-01 X 128926786 128926786 G A SASH3 Missense_Mutation p.E259K 0.46 deleterious(0) probably_damaging(0.999) TCGA-CV-7427-01 X 136113291 136113291 G C GPR101 Silent p.L181L 0.30 TCGA-CV-7427-01 X 147084799 147084799 A T FMR1NB Missense_Mutation p.D119V 0.30 tolerated(0.26) possibly_damaging(0.904) TCGA-CV-7427-01 X 149013285 149013285 G C MAGEA8 Missense_Mutation p.W80S 0.20 tolerated(0.97) benign(0.058) TCGA-CV-7427-01 X 153006073 153006073 G A ABCD1 Silent p.P560P 0.20 TCGA-CV-7427-01 X 153677638 153677638 G C FAM50A Missense_Mutation p.E240Q 0.26 deleterious(0.03) possibly_damaging(0.903) TCGA-CV-7427-01 X 31986604 31986604 G T DMD Missense_Mutation p.Q2156K 0.28 benign(0.092) TCGA-CV-7427-01 X 37969686 37969686 C T SYTL5 Missense_Mutation p.S538L 0.14 deleterious(0) possibly_damaging(0.876) TCGA-CV-7427-01 X 44833908 44833908 C G KDM6A Intron 0.21 TCGA-CV-7427-01 X 54587087 54587087 G A GNL3L 3'UTR 0.16 TCGA-CV-7427-01 X 55247872 55247872 T C PAGE5 Silent p.S39S 0.32 TCGA-CV-7427-01 X 62570191 62570191 C T SPIN4 Missense_Mutation p.D170N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7427-01 X 65242630 65242630 C T VSIG4 Intron 0.25 TCGA-CV-7427-01 X 69255545 69255545 G A EDA 3'UTR 0.29 TCGA-CV-7427-01 X 78010707 78010707 C G LPAR4 Missense_Mutation p.S114C 0.18 deleterious(0) probably_damaging(0.944) TCGA-CV-7427-01 X 78216233 78216233 C G P2RY10 Missense_Mutation p.F72L 0.11 deleterious(0) probably_damaging(0.954) TCGA-CV-7427-01 X 92928297 92928297 C G NAP1L3 Missense_Mutation p.E3Q 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-CV-7429-01 10 105139408 105139408 T G TAF5 Missense_Mutation p.L386W 0.15 deleterious(0.01) probably_damaging(0.958) TCGA-CV-7429-01 10 73569779 73569779 C T CDH23 Silent p.F735F 0.20 TCGA-CV-7429-01 10 92634657 92634657 C A RPP30 Silent p.I38I 0.19 TCGA-CV-7429-01 11 120352148 120352148 G A ARHGEF12 Missense_Mutation p.E1473K 0.24 deleterious_low_confidence(0.01) benign(0.231) TCGA-CV-7429-01 11 17548774 17548774 C T USH1C Silent p.V164V 0.22 TCGA-CV-7429-01 11 6262969 6262969 C A CNGA4 Missense_Mutation p.A409E 0.20 tolerated(0.65) benign(0.004) TCGA-CV-7429-01 11 65161133 65161133 G A FRMD8 Missense_Mutation p.D115N 0.16 deleterious(0.02) possibly_damaging(0.575) TCGA-CV-7429-01 11 65635459 65635459 A T EFEMP2 Missense_Mutation p.M348K 0.05 deleterious(0) probably_damaging(0.997) TCGA-CV-7429-01 11 67933525 67933525 T C SUV420H1 Intron 0.24 TCGA-CV-7429-01 12 108917341 108917341 G C SART3 Missense_Mutation p.Q929E 0.28 tolerated(0.52) benign(0.065) TCGA-CV-7429-01 12 111893892 111893892 G A ATXN2 Missense_Mutation p.H1229Y 0.14 probably_damaging(0.995) TCGA-CV-7429-01 12 112667559 112667559 G A HECTD4 Silent p.A2008A 0.25 TCGA-CV-7429-01 12 48142708 48142708 C A RAPGEF3 Nonsense_Mutation p.E350* 0.24 TCGA-CV-7429-01 12 58008471 58008471 G T ARHGEF25 Splice_Site p.X312_splice 0.10 TCGA-CV-7429-01 14 22985281 22985281 G A TRAJ27 Silent p.G11G 0.26 TCGA-CV-7429-01 14 44976226 44976226 G C FSCB 5'UTR 0.16 TCGA-CV-7429-01 15 31197067 31197067 T C FAN1 Silent p.N67N 0.27 TCGA-CV-7429-01 16 1536086 1536086 C T PTX4 Missense_Mutation p.D426N 0.18 tolerated(0.35) benign(0.075) TCGA-CV-7429-01 16 22926408 22926408 G A HS3ST2 Missense_Mutation p.R210H 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7429-01 16 3726128 3726128 G A TRAP1 Silent p.I241I 0.24 TCGA-CV-7429-01 16 3779591 3779591 G T CREBBP Nonsense_Mutation p.C1819* 0.23 TCGA-CV-7429-01 16 70602265 70602265 G C SF3B3 Missense_Mutation p.W1011S 0.16 deleterious(0.01) benign(0.102) TCGA-CV-7429-01 16 715685 715685 G A WDR90 Missense_Mutation p.E1440K 0.07 deleterious(0.02) probably_damaging(0.94) TCGA-CV-7429-01 17 10369674 10369674 G C MYH4 Missense_Mutation p.I88M 0.22 deleterious(0.04) possibly_damaging(0.525) TCGA-CV-7429-01 17 25909815 25909815 G A KSR1 Missense_Mutation p.A85T 0.23 tolerated(0.49) benign(0.001) TCGA-CV-7429-01 17 27614070 27614071 - T NUFIP2 Frame_Shift_Ins p.F315Vfs*2 0.31 TCGA-CV-7429-01 17 61950577 61950577 G A CSH2 Missense_Mutation p.R45C 0.15 deleterious(0) probably_damaging(0.983) TCGA-CV-7429-01 17 68172221 68172221 T G KCNJ2 Silent p.T347T 0.14 TCGA-CV-7429-01 17 7462496 7462496 C T TNFSF13 Missense_Mutation p.A47V 0.16 tolerated(0.39) benign(0.032) TCGA-CV-7429-01 18 14543020 14543020 G T POTEC Missense_Mutation p.N42K 0.06 deleterious_low_confidence(0) benign(0.001) TCGA-CV-7429-01 18 74536254 74536254 C T ZNF236 5'UTR 0.35 TCGA-CV-7429-01 19 14040911 14040911 C T CC2D1A Missense_Mutation p.R911W 0.24 deleterious(0) probably_damaging(0.972) TCGA-CV-7429-01 19 36233655 36233655 G A U2AF1L4 Silent p.I151I 0.20 TCGA-CV-7429-01 19 3734415 3734415 G T TJP3 Missense_Mutation p.S332I 0.13 deleterious(0.04) possibly_damaging(0.481) TCGA-CV-7429-01 19 41239201 41239201 C T ITPKC Missense_Mutation p.R536C 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-CV-7429-01 19 4171778 4171778 G A CREB3L3 Missense_Mutation p.G400R 0.26 tolerated_low_confidence(0.41) benign(0.003) TCGA-CV-7429-01 1 100550935 100550935 C T SASS6 Silent p.A641A 0.32 TCGA-CV-7429-01 1 11983424 11983424 C T KIAA2013 Missense_Mutation p.E386K 0.07 tolerated(0.24) benign(0.396) TCGA-CV-7429-01 1 12304423 12304423 A G VPS13D Missense_Mutation p.D99G 0.29 benign(0.418) TCGA-CV-7429-01 1 154962992 154962992 C T FLAD1 Silent p.I514I 0.18 TCGA-CV-7429-01 1 165721337 165721337 A G TMCO1 Splice_Site p.X159_splice 0.07 TCGA-CV-7429-01 1 228288911 228288911 C A C1orf35 Missense_Mutation p.C238F 0.50 deleterious_low_confidence(0.02) benign(0.022) TCGA-CV-7429-01 1 248262831 248262831 C T OR2L13 Missense_Mutation p.P52S 0.10 tolerated(0.71) benign(0.001) TCGA-CV-7429-01 1 25245773 25245773 G A RUNX3 Nonsense_Mutation p.R182* 0.14 TCGA-CV-7429-01 1 27088729 27088729 C T ARID1A Nonsense_Mutation p.Q780* 0.24 TCGA-CV-7429-01 1 62321821 62321821 T C INADL Silent p.C744C 0.34 TCGA-CV-7429-01 20 44516182 44516182 G A SPATA25 Silent p.S16S 0.16 TCGA-CV-7429-01 20 50803572 50803572 C A ZFP64 Missense_Mutation p.D29Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-7429-01 21 47412128 47412128 C T COL6A1 Silent p.D411D 0.17 TCGA-CV-7429-01 22 22277382 22277382 C T PPM1F 3'UTR 0.29 TCGA-CV-7429-01 2 178098804 178098804 C A NFE2L2 Missense_Mutation p.G81C 0.41 deleterious(0) probably_damaging(1) TCGA-CV-7429-01 2 179600758 179600758 T C TTN Silent p.T4805T 0.30 TCGA-CV-7429-01 2 210640648 210640648 T A UNC80 Missense_Mutation p.H59Q 0.29 possibly_damaging(0.838) TCGA-CV-7429-01 2 231155199 231155199 C A SP140 Missense_Mutation p.T582N 0.22 tolerated(0.67) benign(0.066) TCGA-CV-7429-01 3 190158157 190158157 C A TMEM207 Missense_Mutation p.L60F 0.19 tolerated(0.75) benign(0) TCGA-CV-7429-01 4 162307374 162307374 T - FSTL5 Frame_Shift_Del p.N690Ifs*4 0.21 TCGA-CV-7429-01 4 69962247 69962247 G A UGT2B7 Silent p.V3V 0.16 TCGA-CV-7429-01 5 14610453 14610453 C T FAM105A 3'UTR 0.22 TCGA-CV-7429-01 5 153783633 153783633 G A GALNT10 Intron 0.07 TCGA-CV-7429-01 5 153826344 153826344 C A SAP30L Silent p.L60L 0.28 TCGA-CV-7429-01 6 114379002 114379002 C G HS3ST5 Missense_Mutation p.E154Q 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7429-01 6 163956139 163956139 G T QKI Missense_Mutation p.K176N 0.21 tolerated(0.12) benign(0.154) TCGA-CV-7429-01 6 53519325 53519325 T C KLHL31 Missense_Mutation p.K249R 0.20 tolerated(0.7) benign(0.015) TCGA-CV-7429-01 7 148964253 148964253 C T ZNF783 Missense_Mutation p.R205W 0.38 deleterious(0.02) benign(0.057) TCGA-CV-7429-01 7 81381502 81381502 G A HGF Missense_Mutation p.P187S 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-7429-01 8 135614165 135614165 C A ZFAT Missense_Mutation p.L599F 0.20 deleterious(0.02) benign(0.231) TCGA-CV-7429-01 8 48701554 48701555 - T PRKDC Frame_Shift_Ins p.N3604Kfs*3 0.17 TCGA-CV-7429-01 X 53432540 53432540 C T SMC1A Missense_Mutation p.R599H 0.69 tolerated(0.16) benign(0.035) TCGA-CV-7430-01 10 102684308 102684308 A G FAM178A Missense_Mutation p.E517G 0.44 tolerated(0.15) possibly_damaging(0.707) TCGA-CV-7430-01 10 108371726 108371726 C T SORCS1 Silent p.P992P 0.44 TCGA-CV-7430-01 10 116590627 116590627 C G FAM160B1 Missense_Mutation p.P21R 0.26 deleterious(0.05) possibly_damaging(0.84) TCGA-CV-7430-01 11 100863058 100863058 G T TMEM133 Missense_Mutation p.V7L 0.37 tolerated_low_confidence(0.08) benign(0.315) TCGA-CV-7430-01 11 119181165 119181165 G A MCAM Missense_Mutation p.P602L 0.38 tolerated(0.05) benign(0.027) TCGA-CV-7430-01 11 124756993 124756993 G T ROBO4 Missense_Mutation p.P772Q 0.38 deleterious(0.02) possibly_damaging(0.804) TCGA-CV-7430-01 11 14316390 14316390 T A RRAS2 Missense_Mutation p.Q72L 0.50 deleterious(0) benign(0.361) TCGA-CV-7430-01 11 36614195 36614195 T A RAG2 Missense_Mutation p.K508N 0.08 deleterious(0.04) probably_damaging(0.966) TCGA-CV-7430-01 11 64591865 64591865 C T CDC42BPG 3'UTR 0.29 TCGA-CV-7430-01 11 68696742 68696742 C T IGHMBP2 Silent p.S384S 0.30 TCGA-CV-7430-01 11 7021319 7021319 C T ZNF214 Missense_Mutation p.G532E 0.56 deleterious(0) probably_damaging(1) TCGA-CV-7430-01 11 84996292 84996292 C T DLG2 Missense_Mutation p.C53Y 0.27 tolerated_low_confidence(0.09) benign(0.059) TCGA-CV-7430-01 12 108634152 108634152 C T WSCD2 Silent p.S392S 0.72 TCGA-CV-7430-01 12 109016914 109016914 C A SELPLG Silent p.P406P 0.70 TCGA-CV-7430-01 12 21630754 21630754 G A RECQL Missense_Mutation p.P284S 0.24 tolerated(0.09) possibly_damaging(0.524) TCGA-CV-7430-01 12 21918866 21918866 G A KCNJ8 Nonsense_Mutation p.R356* 0.32 TCGA-CV-7430-01 12 25362635 25362635 T C KRAS 3'UTR 0.53 TCGA-CV-7430-01 12 47629946 47629946 T C PCED1B Missense_Mutation p.F367S 0.26 deleterious(0.02) possibly_damaging(0.637) TCGA-CV-7430-01 12 49420628 49420628 C T KMT2D Missense_Mutation p.G5041R 0.25 unknown(0) TCGA-CV-7430-01 12 70004207 70004207 C T LRRC10 Missense_Mutation p.D138N 0.26 tolerated(0.37) benign(0.002) TCGA-CV-7430-01 12 78225481 78225481 C A NAV3 Missense_Mutation p.S80R 0.72 deleterious_low_confidence(0.01) benign(0.061) TCGA-CV-7430-01 13 114758033 114758033 C G RASA3 Missense_Mutation p.D725H 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-7430-01 13 32972595 32972595 A T BRCA2 Missense_Mutation p.K3315N 0.38 tolerated(0.17) benign(0.133) TCGA-CV-7430-01 13 53233376 53233376 A G SUGT1 Missense_Mutation p.K107R 0.40 tolerated(0.42) benign(0.008) TCGA-CV-7430-01 14 106091490 106091490 C T IGHG4 Missense_Mutation p.R135Q 0.16 tolerated(0.38) benign(0.049) TCGA-CV-7430-01 14 106092259 106092259 C T IGHG4 Missense_Mutation p.G49S 0.11 tolerated(0.08) possibly_damaging(0.811) TCGA-CV-7430-01 14 23889211 23889211 G A MYH7 Missense_Mutation p.A1190V 0.28 deleterious(0.04) benign(0.434) TCGA-CV-7430-01 14 56142559 56142559 G C KTN1 Missense_Mutation p.A1260P 0.35 deleterious(0) benign(0.038) TCGA-CV-7430-01 14 70633852 70633852 A T SLC8A3 Missense_Mutation p.Y430N 0.41 tolerated(0.12) possibly_damaging(0.673) TCGA-CV-7430-01 14 90767686 90767686 C T NRDE2 Missense_Mutation p.R481Q 0.38 deleterious(0) probably_damaging(0.971) TCGA-CV-7430-01 15 23811475 23811475 C T MKRN3 Silent p.A182A 0.42 TCGA-CV-7430-01 15 40763950 40763950 C A CHST14 Missense_Mutation p.L180I 0.39 tolerated(0.57) benign(0.006) TCGA-CV-7430-01 15 58834054 58834054 T C LIPC Missense_Mutation p.V115A 0.54 tolerated(0.55) benign(0.042) TCGA-CV-7430-01 16 11097000 11097000 C T CLEC16A Missense_Mutation p.H381Y 0.28 tolerated(0.23) benign(0.105) TCGA-CV-7430-01 16 19073265 19073265 A G TMC7 3'UTR 0.23 TCGA-CV-7430-01 16 239005 239005 G T LUC7L 3'UTR 0.47 TCGA-CV-7430-01 16 61859022 61859022 A T CDH8 Silent p.V243V 0.26 TCGA-CV-7430-01 16 68729736 68729736 C T CDH3 Silent p.L730L 0.46 TCGA-CV-7430-01 16 70590203 70590203 A T SF3B3 Missense_Mutation p.D611V 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7430-01 16 71423757 71423757 C - CALB2 Frame_Shift_Del p.M271Cfs*60 0.26 TCGA-CV-7430-01 16 76555134 76555134 T C CNTNAP4 Silent p.F748F 0.24 TCGA-CV-7430-01 16 87376494 87376494 C A FBXO31 Missense_Mutation p.G241W 0.56 deleterious(0.02) probably_damaging(1) TCGA-CV-7430-01 16 88689626 88689626 G A ZC3H18 Splice_Site p.X556_splice 0.53 TCGA-CV-7430-01 17 10369589 10369589 C A MYH4 Splice_Site p.X116_splice 0.35 TCGA-CV-7430-01 17 25749187 25749187 G A TBC1D3P5 RNA 0.18 TCGA-CV-7430-01 17 30551770 30551770 T C RHOT1 3'UTR 0.36 TCGA-CV-7430-01 17 45368453 45368453 C T ITGB3 Missense_Mutation p.T420M 0.37 deleterious(0.04) possibly_damaging(0.889) TCGA-CV-7430-01 17 5377910 5377910 C T DERL2 3'UTR 0.40 TCGA-CV-7430-01 17 68171810 68171810 G A KCNJ2 Silent p.L210L 0.31 TCGA-CV-7430-01 17 72998278 72998278 C T CDR2L Missense_Mutation p.T154I 0.22 deleterious(0.01) probably_damaging(0.943) TCGA-CV-7430-01 17 74019475 74019475 C T EVPL Silent p.V126V 0.40 TCGA-CV-7430-01 17 7578553 7578553 T C TP53 Missense_Mutation p.Y126C 0.62 deleterious(0) probably_damaging(1) TCGA-CV-7430-01 18 56205156 56205156 C T ALPK2 Missense_Mutation p.V755M 0.05 tolerated(0.09) benign(0.351) TCGA-CV-7430-01 19 12735473 12735473 G - ZNF791 Frame_Shift_Del p.E48Kfs*16 0.42 TCGA-CV-7430-01 19 12975624 12975624 C T MAST1 Silent p.G456G 0.31 TCGA-CV-7430-01 19 14512307 14512307 A T CD97 Missense_Mutation p.D336V 0.17 deleterious(0.05) benign(0.009) TCGA-CV-7430-01 19 18001748 18001748 C T SLC5A5 Missense_Mutation p.R569W 0.34 deleterious(0.02) benign(0.006) TCGA-CV-7430-01 19 40477073 40477073 G A PSMC4 5'UTR 0.60 TCGA-CV-7430-01 19 41119739 41119739 G C LTBP4 Intron 0.38 TCGA-CV-7430-01 19 44890792 44890792 G C ZNF285 Missense_Mutation p.P539A 0.58 deleterious(0.03) possibly_damaging(0.876) TCGA-CV-7430-01 19 53117347 53117347 G A ZNF83 Silent p.V157V 0.52 TCGA-CV-7430-01 19 54850163 54850163 A G LILRA4 Missense_Mutation p.L15P 0.39 deleterious(0.03) benign(0.193) TCGA-CV-7430-01 1 100358058 100358058 A G AGL Missense_Mutation p.K1052E 0.49 tolerated(0.18) benign(0.056) TCGA-CV-7430-01 1 120927246 120927246 G C FCGR1B Missense_Mutation p.S245C 0.32 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-7430-01 1 151774779 151774779 C T LINGO4 Silent p.L134L 0.47 TCGA-CV-7430-01 1 158226702 158226702 A T CD1A Missense_Mutation p.Q244L 0.27 tolerated(0.07) benign(0.025) TCGA-CV-7430-01 1 160054148 160054148 G C KCNJ9 Missense_Mutation p.A110P 0.28 deleterious(0) probably_damaging(1) TCGA-CV-7430-01 1 161199441 161199441 C T TOMM40L 3'UTR 0.32 TCGA-CV-7430-01 1 237949308 237949308 G C RYR2 Missense_Mutation p.E4434Q 0.45 probably_damaging(0.982) TCGA-CV-7430-01 1 248458473 248458473 C T OR2T12 Nonsense_Mutation p.W136* 0.43 TCGA-CV-7430-01 1 26301058 26301058 T G PAFAH2 Missense_Mutation p.N281T 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7430-01 1 27089635 27089635 G T ARID1A Missense_Mutation p.G864V 0.48 unknown(0) TCGA-CV-7430-01 1 33150046 33150046 C T RBBP4 3'UTR 0.72 TCGA-CV-7430-01 1 86913313 86913313 A G CLCA2 Silent p.E612E 0.37 TCGA-CV-7430-01 1 91178026 91178026 G A BARHL2 Missense_Mutation p.A336V 0.32 deleterious(0.02) unknown(0) TCGA-CV-7430-01 20 3914726 3914726 G A RNF24 Missense_Mutation p.A165V 0.38 tolerated(0.13) benign(0.002) TCGA-CV-7430-01 20 58349395 58349395 G C PHACTR3 Missense_Mutation p.A342P 0.34 tolerated(0.17) possibly_damaging(0.701) TCGA-CV-7430-01 20 61488812 61488812 C T TCFL5 Silent p.Q391Q 0.78 TCGA-CV-7430-01 21 41684252 41684252 T C DSCAM Silent p.R606R 0.27 TCGA-CV-7430-01 22 26242142 26242142 C G MYO18B Silent p.G1148G 0.33 TCGA-CV-7430-01 22 50921172 50921172 C T ADM2 Missense_Mutation p.S96L 0.63 tolerated(0.71) benign(0.001) TCGA-CV-7430-01 2 105654539 105654539 C T MRPS9 5'UTR 0.33 TCGA-CV-7430-01 2 105654547 105654547 T C MRPS9 5'UTR 0.33 TCGA-CV-7430-01 2 128775458 128775458 G A SAP130 Silent p.V74V 0.37 TCGA-CV-7430-01 2 179484368 179484368 C G TTN Missense_Mutation p.R15559T 0.36 TCGA-CV-7430-01 2 1843127 1843127 C A MYT1L Silent p.G956G 0.36 TCGA-CV-7430-01 2 27276859 27276859 C A AGBL5 Nonsense_Mutation p.Y161* 0.38 TCGA-CV-7430-01 2 33614263 33614282 AGCTGTGTAACATCCCCGTG - LTBP1 Frame_Shift_Del p.Q1575Hfs*14 0.27 TCGA-CV-7430-01 2 68772422 68772422 C G APLF Missense_Mutation p.P422A 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-7430-01 2 97361486 97361486 C T FER1L5 RNA 0.33 TCGA-CV-7430-01 3 108773582 108773582 G T MORC1 Silent p.T441T 0.26 TCGA-CV-7430-01 3 125856801 125856801 A T ALDH1L1 Missense_Mutation p.L370Q 0.57 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-CV-7430-01 3 160968747 160968747 A T NMD3 3'UTR 0.12 TCGA-CV-7430-01 3 164739124 164739124 G T SI Missense_Mutation p.N1049K 0.60 tolerated(0.06) possibly_damaging(0.562) TCGA-CV-7430-01 3 167525052 167525052 T A SERPINI1 Missense_Mutation p.I301N 0.23 deleterious(0) probably_damaging(0.952) TCGA-CV-7430-01 3 169540249 169540249 C T LRRIQ4 Silent p.F180F 0.15 TCGA-CV-7430-01 3 170102443 170102443 A G SKIL Missense_Mutation p.K440R 0.11 tolerated(0.23) benign(0.32) TCGA-CV-7430-01 3 179592166 179592166 G C PEX5L Missense_Mutation p.S225R 0.20 deleterious_low_confidence(0.01) benign(0.346) TCGA-CV-7430-01 3 180397180 180397180 G C CCDC39 5'UTR 0.09 TCGA-CV-7430-01 3 186572497 186572497 C A ADIPOQ 3'UTR 0.13 TCGA-CV-7430-01 3 197619560 197619560 A G IQCG Missense_Mutation p.L345P 0.14 deleterious(0) probably_damaging(0.996) TCGA-CV-7430-01 3 52562303 52562303 C T NT5DC2 Missense_Mutation p.D223N 0.07 deleterious(0) probably_damaging(0.946) TCGA-CV-7430-01 3 98240121 98240121 T A CLDND1 Missense_Mutation p.I73F 0.35 deleterious(0.04) benign(0.002) TCGA-CV-7430-01 4 114277023 114277023 G A ANK2 Missense_Mutation p.D2417N 0.60 probably_damaging(0.923) TCGA-CV-7430-01 4 153691671 153691671 C T TIGD4 Nonsense_Mutation p.W162* 0.54 TCGA-CV-7430-01 4 164393621 164393621 C G TKTL2 Silent p.G422G 0.64 TCGA-CV-7430-01 4 69962284 69962290 TTTTGCT - UGT2B7 Frame_Shift_Del p.F16Lfs*20 0.41 TCGA-CV-7430-01 5 13876803 13876803 G T DNAH5 Missense_Mutation p.S1129Y 0.38 possibly_damaging(0.608) TCGA-CV-7430-01 5 140475050 140475050 G T PCDHB2 Missense_Mutation p.G226C 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7430-01 5 140475051 140475051 G A PCDHB2 Missense_Mutation p.G226D 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-7430-01 5 140735600 140735600 C A PCDHGA4 Missense_Mutation p.T278K 0.11 tolerated_low_confidence(0.12) possibly_damaging(0.681) TCGA-CV-7430-01 5 175913467 175913467 G A FAF2 Missense_Mutation p.V82I 0.41 tolerated(0.3) benign(0.001) TCGA-CV-7430-01 5 32088330 32088330 G T PDZD2 Silent p.S1592S 0.31 TCGA-CV-7430-01 5 56167806 56167806 A T MAP3K1 Silent p.T457T 0.52 TCGA-CV-7430-01 5 9202097 9202097 T C SEMA5A Missense_Mutation p.D301G 0.43 tolerated(0.23) possibly_damaging(0.555) TCGA-CV-7430-01 6 107016470 107016470 G A AIM1 3'UTR 0.33 TCGA-CV-7430-01 6 151293189 151293189 T A MTHFD1L Missense_Mutation p.F707Y 0.27 tolerated(0.67) benign(0.012) TCGA-CV-7430-01 6 155451295 155451295 C T TIAM2 Missense_Mutation p.P313L 0.36 deleterious(0.03) benign(0.043) TCGA-CV-7430-01 6 159655239 159655239 C A FNDC1 Missense_Mutation p.P1232H 0.29 deleterious_low_confidence(0.02) unknown(0) TCGA-CV-7430-01 6 41557787 41557787 G A FOXP4 Silent p.P412P 0.07 TCGA-CV-7430-01 6 7231221 7231221 G A RREB1 Silent p.A963A 0.73 TCGA-CV-7430-01 7 142104314 142104314 A T TRBV6-9 Missense_Mutation p.L51M 0.45 tolerated(1) benign(0) TCGA-CV-7430-01 7 72658588 72658588 G A GTF2IRD2P1 RNA 0.34 TCGA-CV-7430-01 7 88962841 88962841 G A ZNF804B Missense_Mutation p.R182Q 0.34 tolerated(0.79) benign(0.106) TCGA-CV-7430-01 8 121228628 121228628 G A COL14A1 Missense_Mutation p.V546I 0.42 tolerated(0.45) benign(0.029) TCGA-CV-7430-01 8 139277978 139277978 A G FAM135B Missense_Mutation p.F89L 0.29 deleterious(0.02) possibly_damaging(0.852) TCGA-CV-7430-01 8 143745934 143745934 C A JRK RNA 0.50 TCGA-CV-7430-01 8 17407860 17407860 T C SLC7A2 Missense_Mutation p.M290T 0.71 deleterious(0.04) benign(0.059) TCGA-CV-7430-01 8 36766941 36766941 C G KCNU1 Missense_Mutation p.A740G 0.30 deleterious(0) possibly_damaging(0.871) TCGA-CV-7430-01 8 70667725 70667725 T C SLCO5A1 Missense_Mutation p.K398E 0.36 tolerated(0.06) possibly_damaging(0.794) TCGA-CV-7430-01 9 114173351 114173351 T G KIAA0368 Missense_Mutation p.K940N 0.52 deleterious(0.01) possibly_damaging(0.474) TCGA-CV-7430-01 9 119065052 119065052 C A PAPPA Nonsense_Mutation p.C990* 0.26 TCGA-CV-7430-01 9 127557384 127557384 G A OLFML2A Missense_Mutation p.A146T 0.32 deleterious(0.04) possibly_damaging(0.637) TCGA-CV-7430-01 9 127566456 127566456 G A OLFML2A Missense_Mutation p.A335T 0.67 tolerated(0.59) benign(0.031) TCGA-CV-7430-01 9 127715225 127715225 C T SCAI Missense_Mutation p.R584Q 0.49 tolerated(0.68) benign(0.017) TCGA-CV-7430-01 9 138395504 138395504 A T MRPS2 Missense_Mutation p.K139M 0.30 deleterious(0.03) probably_damaging(0.95) TCGA-CV-7430-01 9 139261732 139261732 G A CARD9 Intron 0.59 TCGA-CV-7430-01 9 140245541 140245541 A G EXD3 Silent p.H481H 0.38 TCGA-CV-7430-01 9 140327704 140327704 G T NOXA1 Missense_Mutation p.A300S 0.22 tolerated(0.74) benign(0.014) TCGA-CV-7430-01 9 4117821 4117821 T C GLIS3 Missense_Mutation p.K553E 0.68 deleterious(0) probably_damaging(0.984) TCGA-CV-7430-01 9 95610231 95610231 C T ZNF484 Missense_Mutation p.E282K 0.21 tolerated(0.16) benign(0.003) TCGA-CV-7430-01 X 102337236 102337236 A C NXF3 Missense_Mutation p.C279W 0.06 tolerated(1) benign(0.004) TCGA-CV-7430-01 X 114142025 114142025 G T HTR2C 3'UTR 0.67 TCGA-CV-7430-01 X 21515965 21515965 G A CNKSR2 Splice_Site p.X247_splice 0.62 TCGA-CV-7432-01 10 1094850 1094850 C A IDI1 Missense_Mutation p.G32W 0.36 tolerated_low_confidence(0.09) benign(0.149) TCGA-CV-7432-01 10 133758916 133758916 G A PPP2R2D Missense_Mutation p.R227H 0.31 deleterious(0) probably_damaging(0.981) TCGA-CV-7432-01 10 16949520 16949520 G T CUBN Silent p.S2564S 0.20 TCGA-CV-7432-01 10 22676869 22676869 T A SPAG6 Missense_Mutation p.Y266N 0.32 tolerated(0.3) benign(0.007) TCGA-CV-7432-01 10 43088789 43088789 T C ZNF33B Missense_Mutation p.K537E 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-CV-7432-01 10 81697729 81697729 T C SFTPD Missense_Mutation p.N336S 0.15 deleterious(0) possibly_damaging(0.776) TCGA-CV-7432-01 11 103175431 103175431 G C DYNC2H1 Missense_Mutation p.W3795C 0.03 probably_damaging(0.999) TCGA-CV-7432-01 11 2167652 2167652 G A INS-IGF2 3'Flank 0.27 TCGA-CV-7432-01 11 26353719 26353719 C T ANO3 5'UTR 0.14 TCGA-CV-7432-01 11 26353735 26353735 G A ANO3 5'UTR 0.08 TCGA-CV-7432-01 11 55563785 55563785 A G OR5D14 Missense_Mutation p.I252V 0.27 tolerated(0.28) benign(0.107) TCGA-CV-7432-01 11 55587248 55587248 T A OR5D18 Missense_Mutation p.V48E 0.36 deleterious(0.02) benign(0.022) TCGA-CV-7432-01 11 6632501 6632501 G A TAF10 Silent p.F162F 0.32 TCGA-CV-7432-01 11 74168458 74168458 G A KCNE3 Missense_Mutation p.P51S 0.14 tolerated(0.24) benign(0.003) TCGA-CV-7432-01 11 82645474 82645474 A G C11orf82 3'UTR 0.12 TCGA-CV-7432-01 11 87847103 87847103 A G RAB38 3'UTR 0.50 TCGA-CV-7432-01 12 113435452 113435452 T A OAS2 Missense_Mutation p.L252Q 0.28 deleterious(0.02) probably_damaging(0.967) TCGA-CV-7432-01 12 21358894 21358894 G C SLCO1B1 Missense_Mutation p.G475A 0.13 deleterious(0.02) possibly_damaging(0.818) TCGA-CV-7432-01 12 2927360 2927362 AGA GG ITFG2 Frame_Shift_Del p.E108Gfs*3 0.21 TCGA-CV-7432-01 12 4854710 4854710 G A GALNT8 Missense_Mutation p.G326R 0.20 deleterious(0.02) probably_damaging(1) TCGA-CV-7432-01 12 49717991 49717991 C T TROAP Intron 0.25 TCGA-CV-7432-01 12 49951243 49951243 G A KCNH3 Missense_Mutation p.R920Q 0.18 tolerated(0.27) benign(0.023) TCGA-CV-7432-01 12 52909018 52909018 A T KRT5 Missense_Mutation p.V494D 0.29 deleterious(0) possibly_damaging(0.873) TCGA-CV-7432-01 12 58166597 58166597 G C METTL21B Missense_Mutation p.K30N 0.27 tolerated(0.35) benign(0) TCGA-CV-7432-01 12 7028878 7028878 T A ENO2 Silent p.T272T 0.26 TCGA-CV-7432-01 12 80655748 80655748 G A OTOGL Splice_Site p.X621_splice 0.33 TCGA-CV-7432-01 13 38137487 38137487 C T POSTN Missense_Mutation p.E832K 0.30 deleterious_low_confidence(0.04) benign(0.141) TCGA-CV-7432-01 13 49281497 49281497 G A CYSLTR2 Missense_Mutation p.G182S 0.24 tolerated(0.5) benign(0.029) TCGA-CV-7432-01 13 60485887 60485887 A T DIAPH3 Silent p.P783P 0.34 TCGA-CV-7432-01 13 92797193 92797193 C T GPC5 Silent p.C504C 0.20 TCGA-CV-7432-01 14 20768886 20768886 C A TTC5 Silent p.L92L 0.49 TCGA-CV-7432-01 14 23450599 23450599 G A AJUBA Nonsense_Mutation p.R293* 0.50 TCGA-CV-7432-01 14 31858116 31858116 C G HEATR5A Missense_Mutation p.A290P 0.48 deleterious(0.02) possibly_damaging(0.694) TCGA-CV-7432-01 14 57938276 57938276 G T C14orf105 Missense_Mutation p.Q230K 0.34 tolerated(0.1) benign(0.108) TCGA-CV-7432-01 14 72054661 72054661 C T SIPA1L1 Silent p.D24D 0.34 TCGA-CV-7432-01 14 80328189 80328189 C T NRXN3 Missense_Mutation p.T1023M 0.30 deleterious(0) possibly_damaging(0.897) TCGA-CV-7432-01 14 86088735 86088735 C G FLRT2 Missense_Mutation p.Q293E 0.26 tolerated(0.07) benign(0.045) TCGA-CV-7432-01 15 101120487 101120487 T G LINS Missense_Mutation p.Y157S 0.37 deleterious(0) probably_damaging(0.923) TCGA-CV-7432-01 15 42693865 42693865 C T CAPN3 Missense_Mutation p.R461C 0.21 deleterious(0) probably_damaging(0.992) TCGA-CV-7432-01 16 20554275 20554275 C A ACSM2B Missense_Mutation p.E490D 0.20 deleterious(0.01) benign(0.092) TCGA-CV-7432-01 16 61687870 61687870 T A CDH8 Missense_Mutation p.D681V 0.33 deleterious(0) probably_damaging(0.998) TCGA-CV-7432-01 16 67218811 67218811 G A EXOC3L1 Silent p.L633L 0.14 TCGA-CV-7432-01 16 68894425 68894425 G T TANGO6 Nonsense_Mutation p.E245* 0.26 TCGA-CV-7432-01 16 72993956 72993956 G A ZFHX3 Missense_Mutation p.T30I 0.22 benign(0.228) TCGA-CV-7432-01 16 75148731 75148731 G T LDHD Missense_Mutation p.P155T 0.21 deleterious(0.02) possibly_damaging(0.89) TCGA-CV-7432-01 17 10369620 10369620 G A MYH4 Silent p.L106L 0.27 TCGA-CV-7432-01 17 3853822 3853822 T C ATP2A3 Missense_Mutation p.K205E 0.13 tolerated(0.23) probably_damaging(0.998) TCGA-CV-7432-01 17 39296498 39296498 C T KRTAP4-6 Missense_Mutation p.R81H 0.28 tolerated(0.06) unknown(0) TCGA-CV-7432-01 17 42828265 42828265 G A DBF4B Missense_Mutation p.E498K 0.15 deleterious_low_confidence(0.01) benign(0.044) TCGA-CV-7432-01 17 45507339 45507339 C T EFCAB13 Intron 0.23 TCGA-CV-7432-01 17 47394438 47394438 A C ZNF652 Missense_Mutation p.V217G 0.31 tolerated(0.5) benign(0) TCGA-CV-7432-01 17 66865847 66865847 C G ABCA8 Missense_Mutation p.E1529Q 0.29 deleterious(0) possibly_damaging(0.873) TCGA-CV-7432-01 17 7495898 7495898 T C FXR2 Silent p.Q583Q 0.28 TCGA-CV-7432-01 17 7577554 7577564 TGCAGGAACTG - TP53 Frame_Shift_Del p.S240Gfs*20 0.14 TCGA-CV-7432-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.29 TCGA-CV-7432-01 18 47777156 47777156 T A CCDC11 Missense_Mutation p.E323V 0.23 deleterious(0) possibly_damaging(0.702) TCGA-CV-7432-01 18 59742026 59742026 C A PIGN Missense_Mutation p.D869Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-CV-7432-01 18 7231433 7231433 G A LRRC30 Silent p.L99L 0.24 TCGA-CV-7432-01 18 9256801 9256801 C G ANKRD12 Missense_Mutation p.S1179C 0.24 tolerated(0.16) possibly_damaging(0.572) TCGA-CV-7432-01 19 12060067 12060067 A G ZNF700 Missense_Mutation p.R410G 0.26 deleterious(0) probably_damaging(0.978) TCGA-CV-7432-01 19 12501251 12501251 T C ZNF799 3'UTR 0.26 TCGA-CV-7432-01 19 12575299 12575299 T C ZNF709 Silent p.K479K 0.30 TCGA-CV-7432-01 19 15072806 15072806 G A SLC1A6 Intron 0.29 TCGA-CV-7432-01 19 17844128 17844128 G T MAP1S Missense_Mutation p.R972L 0.38 deleterious(0) possibly_damaging(0.538) TCGA-CV-7432-01 19 1993106 1993106 C T BTBD2 Silent p.K199K 0.19 TCGA-CV-7432-01 19 20807449 20807449 G T ZNF626 Missense_Mutation p.L412I 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-CV-7432-01 19 41281724 41281724 C T MIA Silent p.H65H 0.34 TCGA-CV-7432-01 19 4523797 4523797 C G PLIN5 Missense_Mutation p.A379P 0.33 deleterious(0.02) possibly_damaging(0.823) TCGA-CV-7432-01 19 50361873 50361873 C T PTOV1 Missense_Mutation p.T335I 0.25 tolerated(0.06) benign(0.083) TCGA-CV-7432-01 19 53855800 53855800 T C ZNF845 Silent p.V624V 0.15 TCGA-CV-7432-01 19 55086773 55086773 C T LILRA2 Missense_Mutation p.P236S 0.35 tolerated(0.74) benign(0.34) TCGA-CV-7432-01 19 55450643 55450643 A T NLRP7 Missense_Mutation p.L515Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-CV-7432-01 19 56370318 56370318 G T NLRP4 Missense_Mutation p.G520V 0.28 deleterious(0) probably_damaging(0.993) TCGA-CV-7432-01 19 57022927 57022927 A G ZNF471 5'UTR 0.18 TCGA-CV-7432-01 1 155891296 155891296 C T KIAA0907 Missense_Mutation p.G379E 0.28 deleterious(0.05) possibly_damaging(0.906) TCGA-CV-7432-01 1 158435777 158435777 G A OR10K1 Missense_Mutation p.M142I 0.34 tolerated(0.54) benign(0.027) TCGA-CV-7432-01 1 175063297 175063297 C T TNN Missense_Mutation p.T499M 0.33 deleterious(0.04) benign(0.305) TCGA-CV-7432-01 1 205764562 205764562 T A SLC41A1 Missense_Mutation p.T373S 0.39 deleterious(0) probably_damaging(0.992) TCGA-CV-7432-01 1 237982376 237982376 G A RYR2 Missense_Mutation p.G4825E 0.30 probably_damaging(0.993) TCGA-CV-7432-01 1 240975267 240975267 C A RGS7 Nonsense_Mutation p.E345* 0.28 TCGA-CV-7432-01 1 33237322 33237322 G A KIAA1522 Missense_Mutation p.A848T 0.08 tolerated(0.8) possibly_damaging(0.796) TCGA-CV-7432-01 1 40944893 40944893 T C ZFP69 5'UTR 0.43 TCGA-CV-7432-01 1 60503714 60503714 T A C1orf87 Missense_Mutation p.K271N 0.31 tolerated(0.24) benign(0.106) TCGA-CV-7432-01 1 92459659 92459659 A G BRDT Missense_Mutation p.D712G 0.34 tolerated(0.13) benign(0.103) TCGA-CV-7432-01 20 16712386 16712386 T C SNRPB2 Silent p.N13N 0.28 TCGA-CV-7432-01 20 23433318 23433318 G A CST11 Missense_Mutation p.A44V 0.27 tolerated(1) benign(0.006) TCGA-CV-7432-01 20 23860167 23860167 G A CST5 Silent p.D49D 0.30 TCGA-CV-7432-01 20 30414610 30414610 G A MYLK2 Missense_Mutation p.G365R 0.24 deleterious(0) probably_damaging(0.997) TCGA-CV-7432-01 20 31021634 31021634 C - ASXL1 Frame_Shift_Del p.R545Vfs*158 0.22 TCGA-CV-7432-01 20 3684491 3684491 G - SIGLEC1 Frame_Shift_Del p.I319Sfs*12 0.24 TCGA-CV-7432-01 20 48124503 48124503 A G PTGIS Missense_Mutation p.M486T 0.25 deleterious(0) benign(0.086) TCGA-CV-7432-01 20 60893707 60893707 C A LAMA5 Splice_Site p.X2348_splice 0.43 TCGA-CV-7432-01 21 18971032 18971032 T A BTG3 Missense_Mutation p.D185V 0.29 deleterious(0.01) probably_damaging(1) TCGA-CV-7432-01 21 31744360 31744360 C A KRTAP13-2 Nonsense_Mutation p.E58* 0.17 TCGA-CV-7432-01 21 33684392 33684392 C T MRAP 3'UTR 0.26 TCGA-CV-7432-01 22 17525784 17525784 G A CECR7 RNA 0.45 TCGA-CV-7432-01 22 22988902 22988902 C G GGTLC2 Missense_Mutation p.F29L 0.42 deleterious(0.04) possibly_damaging(0.515) TCGA-CV-7432-01 22 26830196 26830196 C T ASPHD2 Silent p.L205L 0.44 TCGA-CV-7432-01 22 40073401 40073401 G T CACNA1I Missense_Mutation p.G1637V 0.36 deleterious(0) probably_damaging(0.988) TCGA-CV-7432-01 2 112608465 112608465 C A ANAPC1 Missense_Mutation p.G513V 0.24 deleterious(0) probably_damaging(0.94) TCGA-CV-7432-01 2 114257667 114257667 C A FOXD4L1 Silent p.A278A 0.43 TCGA-CV-7432-01 2 116485420 116485420 A G DPP10 Missense_Mutation p.Y206C 0.17 deleterious(0) probably_damaging(0.995) TCGA-CV-7432-01 2 141771236 141771236 T G LRP1B Missense_Mutation p.M757L 0.29 benign(0.008) TCGA-CV-7432-01 2 155102432 155102432 G A GALNT13 Missense_Mutation p.R265H 0.30 deleterious(0) possibly_damaging(0.457) TCGA-CV-7432-01 2 166852534 166852534 G T SCN1A Missense_Mutation p.P1524T 0.23 deleterious(0) probably_damaging(0.948) TCGA-CV-7432-01 2 168114998 168114998 A C XIRP2 3'UTR 0.29 TCGA-CV-7432-01 2 170063445 170063445 C T LRP2 Missense_Mutation p.R2262H 0.24 benign(0) TCGA-CV-7432-01 2 171853218 171853224 AATATTG - TLK1 Frame_Shift_Del p.T688Kfs*10 0.25 TCGA-CV-7432-01 2 179457504 179457505 AG T TTN Frame_Shift_Del p.L19781Mfs*6 0.32 TCGA-CV-7432-01 2 179587087 179587087 A G TTN Missense_Mutation p.L7476S 0.31 TCGA-CV-7432-01 2 219886544 219886544 G T CCDC108 Missense_Mutation p.L1030M 0.41 deleterious(0.01) probably_damaging(0.956) TCGA-CV-7432-01 2 228148997 228148997 A G COL4A3 Silent p.K939K 0.27 TCGA-CV-7432-01 2 239090740 239090740 G T ILKAP Silent p.R268R 0.30 TCGA-CV-7432-01 2 79255001 79255001 G A REG3G Silent p.E134E 0.46 TCGA-CV-7432-01 3 119343977 119343977 A T PLA1A Missense_Mutation p.H340L 0.34 deleterious(0.01) possibly_damaging(0.703) TCGA-CV-7432-01 3 123512632 123512632 C T MYLK Silent p.V19V 0.24 TCGA-CV-7432-01 3 13370375 13370375 C T NUP210 Silent p.V1394V 0.57 TCGA-CV-7432-01 3 155633846 155633846 A T GMPS Silent p.P359P 0.21 TCGA-CV-7432-01 3 155633847 155633847 G A GMPS Missense_Mutation p.E360K 0.21 tolerated(0.18) benign(0.009) TCGA-CV-7432-01 3 183655818 183655818 C T ABCC5 Missense_Mutation p.R1242H 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7432-01 3 195966589 195966589 C A PCYT1A Missense_Mutation p.L242F 0.20 tolerated(0.34) benign(0.016) TCGA-CV-7432-01 3 62254758 62254758 A G PTPRG Missense_Mutation p.N975D 0.56 tolerated(0.06) benign(0.015) TCGA-CV-7432-01 3 89390133 89390133 T G EPHA3 Missense_Mutation p.S294R 0.24 deleterious(0) possibly_damaging(0.733) TCGA-CV-7432-01 4 156643246 156643246 G A GUCY1A3 Missense_Mutation p.M591I 0.47 deleterious(0) possibly_damaging(0.535) TCGA-CV-7432-01 4 22749519 22749519 T C GBA3 Missense_Mutation p.M296T 0.57 tolerated(0.09) benign(0.003) TCGA-CV-7432-01 4 36122929 36122929 T C ARAP2 Missense_Mutation p.I1256V 0.47 deleterious(0.05) benign(0.374) TCGA-CV-7432-01 4 5448436 5448436 C T STK32B Missense_Mutation p.P200L 0.45 tolerated(0.32) probably_damaging(1) TCGA-CV-7432-01 4 62679537 62679537 T A LPHN3 Missense_Mutation p.H402Q 0.10 tolerated(0.36) benign(0.013) TCGA-CV-7432-01 4 96762054 96762054 G A PDHA2 Silent p.K251K 0.17 TCGA-CV-7432-01 5 11023090 11023090 G T CTNND2 Silent p.G930G 0.27 TCGA-CV-7432-01 5 127638678 127638678 A C FBN2 Missense_Mutation p.N1968K 0.31 deleterious(0) possibly_damaging(0.837) TCGA-CV-7432-01 5 130883877 130883878 - C RAPGEF6 Frame_Shift_Ins p.N120Efs*5 0.18 TCGA-CV-7432-01 5 138665129 138665129 T A MATR3 3'UTR 0.10 TCGA-CV-7432-01 5 140240961 140240961 C T AC005609.1 3'UTR 0.29 TCGA-CV-7432-01 5 140261865 140261865 C T PCDHA13 Silent p.S4S 0.24 TCGA-CV-7432-01 5 140262129 140262129 C T PCDHA13 Silent p.R92R 0.06 TCGA-CV-7432-01 5 140480873 140480873 G A PCDHB3 Missense_Mutation p.A214T 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CV-7432-01 5 140580697 140580697 C A PCDHB11 Silent p.T450T 0.32 TCGA-CV-7432-01 5 140605137 140605137 C T PCDHB14 Missense_Mutation p.T687I 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7432-01 5 14608915 14608915 T G FAM105A Missense_Mutation p.L229R 0.29 deleterious(0) probably_damaging(1) TCGA-CV-7432-01 5 149562461 149562461 G A CDX1 Silent p.G192G 0.33 TCGA-CV-7432-01 5 153175081 153175081 C G GRIA1 Intron 0.35 TCGA-CV-7432-01 5 156721850 156721850 G C CYFIP2 Intron 0.36 TCGA-CV-7432-01 5 156738742 156738742 G T CYFIP2 Missense_Mutation p.D329Y 0.31 deleterious(0) benign(0.344) TCGA-CV-7432-01 5 168123340 168123340 G A SLIT3 Silent p.D1013D 0.23 TCGA-CV-7432-01 5 169461497 169461497 T A DOCK2 Missense_Mutation p.Y1188N 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-7432-01 5 175913486 175913486 C T FAF2 Missense_Mutation p.P88L 0.20 deleterious(0) possibly_damaging(0.647) TCGA-CV-7432-01 5 24487755 24487755 A T CDH10 3'UTR 0.23 TCGA-CV-7432-01 5 31316322 31316322 A G CDH6 Silent p.P466P 0.21 TCGA-CV-7432-01 5 33982466 33982466 A C SLC45A2 Missense_Mutation p.M146R 0.26 deleterious(0) probably_damaging(0.995) TCGA-CV-7432-01 5 38489306 38489306 C T LIFR Missense_Mutation p.A737T 0.14 deleterious(0.01) possibly_damaging(0.507) TCGA-CV-7432-01 5 63256467 63256467 G A HTR1A Silent p.P360P 0.20 TCGA-CV-7432-01 5 7717334 7717334 G A ADCY2 Missense_Mutation p.G563R 0.26 deleterious(0.02) possibly_damaging(0.542) TCGA-CV-7432-01 5 82817564 82817564 A G VCAN Missense_Mutation p.T1147A 0.39 tolerated(0.41) benign(0.01) TCGA-CV-7432-01 5 93856569 93856569 A C KIAA0825 Silent p.L118L 0.22 TCGA-CV-7432-01 5 94852669 94852669 G A TTC37 Missense_Mutation p.T796I 0.25 tolerated(0.12) benign(0.036) TCGA-CV-7432-01 5 95746664 95746664 G A PCSK1 Silent p.F303F 0.08 TCGA-CV-7432-01 5 96112031 96112031 T G ERAP1 Intron 0.20 TCGA-CV-7432-01 6 111587184 111587184 C A KIAA1919 Missense_Mutation p.A140D 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-CV-7432-01 6 111695451 111695451 T C REV3L Silent p.A1369A 0.35 TCGA-CV-7432-01 6 142399733 142399733 G T NMBR Missense_Mutation p.H244N 0.29 tolerated(0.28) probably_damaging(0.927) TCGA-CV-7432-01 6 144844227 144844227 G T UTRN Nonsense_Mutation p.E1937* 0.23 TCGA-CV-7432-01 6 145172242 145172242 G T UTRN 3'UTR 0.25 TCGA-CV-7432-01 6 152786398 152786398 T A SYNE1 Nonsense_Mutation p.K643* 0.28 TCGA-CV-7432-01 6 25689756 25689756 A T SCGN Missense_Mutation p.D210V 0.29 deleterious(0) probably_damaging(0.996) TCGA-CV-7432-01 6 26124444 26124444 A T HIST1H2AC 5'UTR 0.36 TCGA-CV-7432-01 6 36930839 36930839 C T PI16 Missense_Mutation p.P241S 0.32 tolerated(0.17) benign(0.077) TCGA-CV-7432-01 6 49753700 49753700 C A PGK2 Nonsense_Mutation p.E401* 0.27 TCGA-CV-7432-01 6 53787549 53787549 C T LRRC1 Silent p.N511N 0.15 TCGA-CV-7432-01 6 83820000 83820000 A T DOPEY1 Missense_Mutation p.Q216H 0.33 deleterious(0.01) probably_damaging(0.964) TCGA-CV-7432-01 6 90604421 90604421 G A GJA10 Nonsense_Mutation p.W78* 0.20 TCGA-CV-7432-01 7 11676534 11676534 C A THSD7A Missense_Mutation p.R82M 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-7432-01 7 117235095 117235095 G A CFTR Missense_Mutation p.V868I 0.32 tolerated(0.58) benign(0.025) TCGA-CV-7432-01 7 136700564 136700564 G A CHRM2 Missense_Mutation p.E318K 0.29 tolerated(0.78) benign(0.014) TCGA-CV-7432-01 7 149493814 149493814 G A SSPO RNA 0.29 TCGA-CV-7432-01 7 15470671 15470671 T A AGMO Missense_Mutation p.T158S 0.32 deleterious(0.01) possibly_damaging(0.571) TCGA-CV-7432-01 7 24708126 24708126 C A MPP6 Missense_Mutation p.R321S 0.35 deleterious(0.03) possibly_damaging(0.564) TCGA-CV-7432-01 7 31829690 31829690 A G PDE1C Intron 0.27 TCGA-CV-7432-01 7 51287530 51287530 C G COBL Missense_Mutation p.L51F 0.06 deleterious(0) probably_damaging(0.995) TCGA-CV-7432-01 7 87135328 87135328 G A ABCB1 Missense_Mutation p.T1174I 0.38 deleterious(0.01) possibly_damaging(0.859) TCGA-CV-7432-01 7 95439771 95439771 C G DYNC1I1 Missense_Mutation p.T59R 0.10 deleterious(0.03) probably_damaging(0.978) TCGA-CV-7432-01 8 107782189 107782189 C A ABRA Missense_Mutation p.S77I 0.27 tolerated(0.17) benign(0.072) TCGA-CV-7432-01 8 141900746 141900746 C A PTK2 Missense_Mutation p.G31C 0.25 deleterious_low_confidence(0.02) benign(0.101) TCGA-CV-7432-01 8 144732254 144732254 C - ZNF623 Frame_Shift_Del p.S73Lfs*9 0.23 TCGA-CV-7432-01 8 144990748 144990748 C T PLEC Missense_Mutation p.R4551H 0.08 probably_damaging(0.987) TCGA-CV-7432-01 8 2024315 2024315 G A MYOM2 Silent p.P405P 0.34 TCGA-CV-7432-01 8 2820134 2820134 G A CSMD1 Missense_Mutation p.P3161L 0.22 probably_damaging(1) TCGA-CV-7432-01 8 91929769 91929769 T A NECAB1 Nonsense_Mutation p.L136* 0.29 TCGA-CV-7432-01 8 98290055 98290055 C A TSPYL5 Silent p.R6R 0.57 TCGA-CV-7432-01 9 101216493 101216493 G T GABBR2 Missense_Mutation p.Q336K 0.28 tolerated(0.62) benign(0.055) TCGA-CV-7432-01 9 113445040 113445040 C A MUSK Missense_Mutation p.Q56K 0.09 tolerated_low_confidence(0.44) benign(0.061) TCGA-CV-7432-01 9 116822492 116822492 T C AMBP 3'UTR 0.38 TCGA-CV-7432-01 9 128206807 128206807 A G MAPKAP1 Silent p.A472A 0.35 TCGA-CV-7432-01 9 130707135 130707135 G T FAM102A Missense_Mutation p.D320E 0.22 tolerated(0.15) possibly_damaging(0.672) TCGA-CV-7432-01 9 135462840 135462840 C T BARHL1 Silent p.F197F 0.33 TCGA-CV-7432-01 9 136234283 136234283 C T SURF4 Silent p.A29A 0.09 TCGA-CV-7432-01 9 75531989 75531989 C T ALDH1A1 Silent p.G294G 0.36 TCGA-CV-7432-01 X 138687074 138687074 C A MCF2 Missense_Mutation p.D619Y 0.49 deleterious(0) probably_damaging(0.997) TCGA-CV-7432-01 X 153247510 153247510 C T TMEM187 5'UTR 0.75 TCGA-CV-7432-01 X 18606257 18606257 G T CDKL5 Silent p.G246G 0.44 TCGA-CV-7432-01 X 3238516 3238516 G A MXRA5 Missense_Mutation p.T1737I 0.29 deleterious(0) probably_damaging(0.995) TCGA-CV-7432-01 X 37028185 37028185 T C FAM47C Missense_Mutation p.Y568H 0.44 tolerated_low_confidence(0.34) benign(0.001) TCGA-CV-7432-01 X 48419318 48419318 G A TBC1D25 Silent p.E674E 0.68 TCGA-CV-7432-01 X 54569430 54569430 G A GNL3L Missense_Mutation p.D117N 0.48 tolerated(0.61) probably_damaging(0.995) TCGA-CV-7432-01 X 86924268 86924268 C A KLHL4 Intron 0.38 TCGA-CV-7433-01 10 112641196 112641196 C T PDCD4 Silent p.D83D 0.19 TCGA-CV-7433-01 10 13629043 13629043 G A PRPF18 5'UTR 0.22 TCGA-CV-7433-01 10 43612115 43612115 G T RET Missense_Mutation p.K740N 0.15 deleterious(0) probably_damaging(0.974) TCGA-CV-7433-01 10 70728861 70728861 C T DDX21 Missense_Mutation p.T407M 0.11 deleterious(0.05) benign(0.271) TCGA-CV-7433-01 11 123887153 123887153 A G OR10G4 Missense_Mutation p.N291S 0.14 deleterious(0) probably_damaging(0.998) TCGA-CV-7433-01 11 124794745 124794745 A G HEPACAM Silent p.F102F 0.17 TCGA-CV-7433-01 11 14277228 14277228 C A SPON1 RNA 0.14 TCGA-CV-7433-01 11 1775232 1775232 G A CTSD Nonsense_Mutation p.Q322* 0.23 TCGA-CV-7433-01 11 48266856 48266856 C T OR4X2 Silent p.S67S 0.15 TCGA-CV-7433-01 11 64032844 64032844 C T PLCB3 Missense_Mutation p.R969W 0.11 deleterious(0) possibly_damaging(0.832) TCGA-CV-7433-01 11 65314018 65314018 C A LTBP3 Nonsense_Mutation p.E750* 0.33 TCGA-CV-7433-01 11 68527764 68527764 G A CPT1A Nonsense_Mutation p.Q691* 0.07 TCGA-CV-7433-01 11 788638 788638 G T CEND1 5'UTR 0.17 TCGA-CV-7433-01 12 100897143 100897143 C T NR1H4 5'UTR 0.24 TCGA-CV-7433-01 12 10319441 10319441 T A OLR1 Silent p.S98S 0.06 TCGA-CV-7433-01 12 108086644 108086644 G C PWP1 Missense_Mutation p.D125H 0.18 deleterious(0.03) possibly_damaging(0.547) TCGA-CV-7433-01 12 110232203 110232203 G A TRPV4 Silent p.N474N 0.07 TCGA-CV-7433-01 12 41966576 41966576 G C PDZRN4 Missense_Mutation p.E665D 0.10 deleterious(0) probably_damaging(0.99) TCGA-CV-7433-01 12 56848316 56848316 G T MIP Missense_Mutation p.L28M 0.08 tolerated(0.1) benign(0.436) TCGA-CV-7433-01 12 57828902 57828902 A C INHBC Missense_Mutation p.H78P 0.07 deleterious(0.01) benign(0.233) TCGA-CV-7433-01 12 64891448 64891448 G C TBK1 Missense_Mutation p.Q660H 0.20 tolerated(0.33) benign(0.007) TCGA-CV-7433-01 12 7343015 7343015 C T PEX5 Silent p.A14A 0.21 TCGA-CV-7433-01 14 103852359 103852359 G A MARK3 5'UTR 0.07 TCGA-CV-7433-01 14 20345320 20345320 G T OR4K2 Missense_Mutation p.M298I 0.12 tolerated(0.16) benign(0.003) TCGA-CV-7433-01 14 20502196 20502196 G A OR4K13 Missense_Mutation p.S241L 0.28 deleterious(0) probably_damaging(0.911) TCGA-CV-7433-01 14 23842343 23842350 AGATTAGG - IL25 Frame_Shift_Del p.R6* 0.15 TCGA-CV-7433-01 14 72055487 72055487 C T SIPA1L1 Missense_Mutation p.R300C 0.07 deleterious(0) probably_damaging(0.993) TCGA-CV-7433-01 14 81744353 81744353 G T STON2 Silent p.I434I 0.06 TCGA-CV-7433-01 14 88936012 88936012 G T PTPN21 Silent p.T1022T 0.13 TCGA-CV-7433-01 14 94007049 94007049 G A UNC79 Missense_Mutation p.E289K 0.09 tolerated(0.09) probably_damaging(0.996) TCGA-CV-7433-01 14 95030432 95030432 G A SERPINA4 Missense_Mutation p.V205I 0.07 tolerated(0.31) benign(0.005) TCGA-CV-7433-01 15 44202113 44202113 C T FRMD5 Missense_Mutation p.D132N 0.22 deleterious(0) probably_damaging(1) TCGA-CV-7433-01 15 56961080 56961080 G A ZNF280D Nonsense_Mutation p.Q496* 0.11 TCGA-CV-7433-01 15 62939604 62939604 G A TLN2 Missense_Mutation p.R32Q 0.07 deleterious(0.01) possibly_damaging(0.534) TCGA-CV-7433-01 16 2236796 2236796 C A CASKIN1 Missense_Mutation p.W320C 0.16 probably_damaging(1) TCGA-CV-7433-01 16 28967619 28967619 C T NFATC2IP Silent p.I269I 0.07 TCGA-CV-7433-01 16 2903246 2903246 C T PRSS22 Missense_Mutation p.E268K 0.13 tolerated(0.1) possibly_damaging(0.535) TCGA-CV-7433-01 16 29937220 29937220 C T KCTD13 Silent p.L45L 0.11 TCGA-CV-7433-01 16 67691743 67691743 C A ACD Missense_Mutation p.R493M 0.29 deleterious(0) possibly_damaging(0.73) TCGA-CV-7433-01 16 71783838 71783838 G A AP1G1 Missense_Mutation p.L489F 0.12 tolerated(0.09) benign(0.114) TCGA-CV-7433-01 16 90030604 90030604 G C DEF8 Missense_Mutation p.E404D 0.08 tolerated(0.09) possibly_damaging(0.524) TCGA-CV-7433-01 17 18066632 18066632 C T MYO15A Silent p.C3229C 0.09 TCGA-CV-7433-01 17 27999102 27999102 C T SSH2 Silent p.A193A 0.17 TCGA-CV-7433-01 17 29220393 29220393 T C ATAD5 Missense_Mutation p.Y1508H 0.19 tolerated(0.21) benign(0.011) TCGA-CV-7433-01 17 35802715 35802715 A G TADA2A Missense_Mutation p.M165V 0.06 deleterious(0.01) benign(0.383) TCGA-CV-7433-01 17 72368688 72368688 G A GPR142 Silent p.A446A 0.09 TCGA-CV-7433-01 17 74734467 74734467 C T MFSD11 Silent p.I11I 0.15 TCGA-CV-7433-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.30 deleterious(0.03) probably_damaging(1) TCGA-CV-7433-01 17 8790999 8790999 G A PIK3R5 Missense_Mutation p.R540W 0.23 deleterious(0.01) possibly_damaging(0.766) TCGA-CV-7433-01 18 8720391 8720391 A T SOGA2 Missense_Mutation p.K85M 0.20 deleterious(0) probably_damaging(0.987) TCGA-CV-7433-01 19 12866735 12866735 G A BEST2 Missense_Mutation p.D312N 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-7433-01 19 13941241 13941241 T G ZSWIM4 Missense_Mutation p.S783A 0.08 tolerated(0.76) unknown(0) TCGA-CV-7433-01 19 18684147 18684147 A G UBA52 Missense_Mutation p.I13V 0.12 tolerated(0.09) probably_damaging(0.994) TCGA-CV-7433-01 19 30312987 30312987 G T CCNE1 Nonsense_Mutation p.E264* 0.05 TCGA-CV-7433-01 19 46914545 46914545 C G CCDC8 Missense_Mutation p.R508T 0.10 probably_damaging(0.994) TCGA-CV-7433-01 19 46915167 46915167 C T CCDC8 Missense_Mutation p.D301N 0.06 benign(0.015) TCGA-CV-7433-01 1 155989899 155989899 T A SSR2 Silent p.G20G 0.22 TCGA-CV-7433-01 1 160990822 160990822 G C F11R Silent p.L14L 0.22 TCGA-CV-7433-01 1 16257103 16257103 A G SPEN Silent p.S1456S 0.10 TCGA-CV-7433-01 1 196796099 196796099 C A CFHR1 Silent p.R132R 0.18 TCGA-CV-7433-01 1 220986691 220986691 G C MARC1 Silent p.G315G 0.06 TCGA-CV-7433-01 1 244681992 244681992 G C C1orf101 Missense_Mutation p.M176I 0.14 tolerated(0.37) benign(0.002) TCGA-CV-7433-01 1 247588376 247588376 C T NLRP3 Missense_Mutation p.T544M 0.14 tolerated(0.11) benign(0.11) TCGA-CV-7433-01 1 248636724 248636724 G A OR2T3 Missense_Mutation p.E25K 0.05 tolerated(0.07) benign(0.038) TCGA-CV-7433-01 1 33329821 33329821 C G FNDC5 3'UTR 0.05 TCGA-CV-7433-01 1 55144993 55144993 G C MROH7 Missense_Mutation p.E703Q 0.25 deleterious(0) possibly_damaging(0.874) TCGA-CV-7433-01 1 6639390 6639390 G A TAS1R1 Missense_Mutation p.E758K 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7433-01 1 67787482 67787482 C G IL12RB2 Missense_Mutation p.L92V 0.07 deleterious(0) probably_damaging(0.997) TCGA-CV-7433-01 1 92789160 92789160 T A RPAP2 Missense_Mutation p.L228Q 0.13 deleterious(0) probably_damaging(0.919) TCGA-CV-7433-01 1 92789163 92789163 C A RPAP2 Missense_Mutation p.P229Q 0.12 tolerated(0.07) benign(0.152) TCGA-CV-7433-01 20 10622312 10622312 G A JAG1 Silent p.L904L 0.18 TCGA-CV-7433-01 20 1558986 1558986 C T RP4-576H24.4 Missense_Mutation p.R143H 0.15 tolerated(0.51) benign(0.011) TCGA-CV-7433-01 20 307440 307440 G A SOX12 Missense_Mutation p.C291Y 0.24 deleterious(0) unknown(0) TCGA-CV-7433-01 20 31023178 31023178 A G ASXL1 Missense_Mutation p.K888R 0.17 deleterious_low_confidence(0.01) benign(0.08) TCGA-CV-7433-01 20 61391421 61391421 C G NTSR1 Missense_Mutation p.F353L 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-7433-01 22 18022154 18022154 G A CECR2 Nonsense_Mutation p.W753* 0.19 TCGA-CV-7433-01 22 24219248 24219248 G A AP000350.10 Silent p.Q107Q 0.13 TCGA-CV-7433-01 22 29627077 29627077 G T EMID1 Silent p.P178P 0.10 TCGA-CV-7433-01 22 29913096 29913096 A G THOC5 Missense_Mutation p.F535L 0.11 tolerated(0.27) possibly_damaging(0.483) TCGA-CV-7433-01 22 35660938 35660938 A G HMGXB4 Missense_Mutation p.E186G 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7433-01 22 38824021 38824021 C T KCNJ4 Silent p.S39S 0.16 TCGA-CV-7433-01 2 11341183 11341183 G C ROCK2 Missense_Mutation p.S937C 0.10 tolerated(0.14) possibly_damaging(0.894) TCGA-CV-7433-01 2 152989924 152989924 T C STAM2 Missense_Mutation p.I292V 0.19 tolerated(0.07) benign(0.076) TCGA-CV-7433-01 2 159433849 159433849 G C PKP4 Missense_Mutation p.E67Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7433-01 2 200245204 200245204 T A SATB2 Silent p.S160S 0.09 TCGA-CV-7433-01 2 29356553 29356553 C G CLIP4 Missense_Mutation p.Q134E 0.27 deleterious(0.02) benign(0.217) TCGA-CV-7433-01 2 48026701 48026714 CTGGAAGGTGATCC - MSH6 Frame_Shift_Del p.E528* 0.12 TCGA-CV-7433-01 2 55252633 55252633 T C RTN4 Missense_Mutation p.I868V 0.20 tolerated(0.52) benign(0.023) TCGA-CV-7433-01 2 70131458 70131458 G C SNRNP27 3'UTR 0.09 TCGA-CV-7433-01 2 75720328 75720328 C G EVA1A 3'UTR 0.10 TCGA-CV-7433-01 2 8822625 8822625 C T ID2 Silent p.I110I 0.07 TCGA-CV-7433-01 3 112987215 112987215 C T BOC Missense_Mutation p.A149V 0.17 tolerated(0.16) possibly_damaging(0.855) TCGA-CV-7433-01 3 127339922 127339922 G T MCM2 Missense_Mutation p.A819S 0.08 tolerated(0.6) benign(0.002) TCGA-CV-7433-01 3 145913005 145913005 G A PLSCR4 Missense_Mutation p.S284L 0.16 deleterious(0.02) possibly_damaging(0.744) TCGA-CV-7433-01 3 156272786 156272786 G C SSR3 Silent p.L31L 0.09 TCGA-CV-7433-01 3 184062544 184062547 TGGG - FAM131A Frame_Shift_Del p.L296Pfs*39 0.09 TCGA-CV-7433-01 3 38349184 38349184 G A SLC22A14 Missense_Mutation p.G250S 0.24 tolerated(0.07) possibly_damaging(0.823) TCGA-CV-7433-01 3 48560992 48560992 C G PFKFB4 Silent p.L421L 0.12 TCGA-CV-7433-01 4 164246608 164246608 G C NPY1R Missense_Mutation p.F334L 0.16 tolerated(1) benign(0) TCGA-CV-7433-01 4 46979498 46979498 G C GABRA4 Silent p.V141V 0.09 TCGA-CV-7433-01 4 71892453 71892453 A T DCK Missense_Mutation p.Y246F 0.16 tolerated(0.1) benign(0.049) TCGA-CV-7433-01 4 74350051 74350051 G C AFM Missense_Mutation p.E72Q 0.12 tolerated(0.24) benign(0.11) TCGA-CV-7433-01 4 75673268 75673268 C T BTC Missense_Mutation p.E174K 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7433-01 4 78697453 78697453 T C CNOT6L Silent p.K33K 0.16 TCGA-CV-7433-01 4 84350691 84350691 C T HELQ Missense_Mutation p.R835H 0.09 tolerated(0.09) benign(0.015) TCGA-CV-7433-01 5 134910294 134910294 G C CXCL14 Missense_Mutation p.I96M 0.07 deleterious(0.01) possibly_damaging(0.904) TCGA-CV-7433-01 5 140552561 140552561 G C PCDHB7 Missense_Mutation p.A49P 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.541) TCGA-CV-7433-01 5 140552562 140552562 C T PCDHB7 Missense_Mutation p.A49V 0.13 tolerated_low_confidence(0.19) benign(0.121) TCGA-CV-7433-01 5 140764402 140764402 G A PCDHGA7 Missense_Mutation p.V646I 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-CV-7433-01 5 142661359 142661359 T C NR3C1 3'UTR 0.10 TCGA-CV-7433-01 5 142779482 142779482 C G NR3C1 Missense_Mutation p.G308A 0.09 tolerated(0.28) probably_damaging(0.934) TCGA-CV-7433-01 5 1432607 1432607 C A SLC6A3 Missense_Mutation p.G209W 0.24 tolerated(0.2) benign(0.012) TCGA-CV-7433-01 5 159343986 159343986 T G ADRA1B Missense_Mutation p.F25C 0.07 tolerated(0.06) benign(0.258) TCGA-CV-7433-01 5 38957791 38957791 C T RICTOR Missense_Mutation p.R821K 0.12 tolerated(0.22) possibly_damaging(0.89) TCGA-CV-7433-01 5 40716521 40716521 C T TTC33 Missense_Mutation p.R172K 0.07 tolerated(0.76) benign(0.132) TCGA-CV-7433-01 5 40854219 40854219 C A CARD6 Missense_Mutation p.L929I 0.19 tolerated(0.17) benign(0.007) TCGA-CV-7433-01 5 63871704 63871704 C T RGS7BP Silent p.L146L 0.06 TCGA-CV-7433-01 6 109766982 109766982 C T MICAL1 Missense_Mutation p.V889M 0.19 tolerated(0.24) benign(0.007) TCGA-CV-7433-01 6 114378702 114378702 C G HS3ST5 Missense_Mutation p.D254H 0.05 deleterious(0) probably_damaging(1) TCGA-CV-7433-01 6 114378831 114378831 C G HS3ST5 Missense_Mutation p.E211Q 0.07 deleterious(0.03) probably_damaging(0.942) TCGA-CV-7433-01 6 116938343 116938343 C G RSPH4A Nonsense_Mutation p.S186* 0.10 TCGA-CV-7433-01 6 160514626 160514626 G T IGF2R Intron 0.11 TCGA-CV-7433-01 6 161139457 161139457 C - PLG Frame_Shift_Del p.H307Ifs*64 0.09 TCGA-CV-7433-01 6 32172089 32172089 T A NOTCH4 Silent p.G981G 0.11 TCGA-CV-7433-01 6 33284113 33284113 G T ZBTB22 Missense_Mutation p.S194Y 0.09 deleterious(0) probably_damaging(0.994) TCGA-CV-7433-01 6 42975736 42975736 C T PPP2R5D Missense_Mutation p.R264C 0.08 deleterious(0) probably_damaging(1) TCGA-CV-7433-01 6 44222466 44222466 C G SLC35B2 Missense_Mutation p.E426Q 0.07 tolerated(0.35) benign(0.008) TCGA-CV-7433-01 6 47646751 47646751 C T GPR111 Nonsense_Mutation p.Q118* 0.18 TCGA-CV-7433-01 6 70993468 70993468 G A COL9A1 Missense_Mutation p.T251I 0.15 unknown(0) TCGA-CV-7433-01 6 7566626 7566626 T C DSP Missense_Mutation p.L319P 0.19 probably_damaging(1) TCGA-CV-7433-01 6 7581448 7581448 C T DSP Silent p.V1675V 0.08 TCGA-CV-7433-01 6 7583519 7583519 C G DSP Missense_Mutation p.I2008M 0.12 benign(0.031) TCGA-CV-7433-01 6 7585993 7585993 C A DSP Missense_Mutation p.S2833Y 0.07 probably_damaging(0.982) TCGA-CV-7433-01 6 79665371 79665371 G A PHIP Missense_Mutation p.L1271F 0.09 tolerated(0.09) probably_damaging(0.942) TCGA-CV-7433-01 7 101187376 101187376 T A COL26A1 Silent p.P234P 0.23 TCGA-CV-7433-01 7 143400471 143400471 C T FAM115C Silent p.I128I 0.09 TCGA-CV-7433-01 7 21723498 21723498 T C DNAH11 Missense_Mutation p.F1860L 0.07 benign(0.137) TCGA-CV-7433-01 7 21747407 21747407 C G DNAH11 Missense_Mutation p.L2220V 0.09 probably_damaging(0.967) TCGA-CV-7433-01 7 30065984 30065984 C G FKBP14 Missense_Mutation p.L47F 0.12 deleterious(0.01) benign(0.178) TCGA-CV-7433-01 7 30538508 30538508 C G GGCT Missense_Mutation p.V112L 0.07 deleterious(0.01) possibly_damaging(0.692) TCGA-CV-7433-01 7 75171237 75171237 C T HIP1 Splice_Site p.X984_splice 0.12 TCGA-CV-7433-01 7 75612939 75612939 C T POR Missense_Mutation p.S311L 0.12 deleterious(0.02) benign(0.198) TCGA-CV-7433-01 8 100493856 100493856 C A VPS13B Silent p.I1232I 0.11 TCGA-CV-7433-01 8 100796680 100796680 C T VPS13B Silent p.S2664S 0.20 TCGA-CV-7433-01 8 105503225 105503225 C T LRP12 Silent p.Q752Q 0.14 TCGA-CV-7433-01 8 132002670 132002670 C T ADCY8 Missense_Mutation p.R360K 0.16 deleterious(0.02) probably_damaging(0.952) TCGA-CV-7433-01 8 39782292 39782292 G T IDO1 Splice_Site p.X236_splice 0.18 TCGA-CV-7433-01 8 95539335 95539335 G A KIAA1429 Silent p.I379I 0.04 TCGA-CV-7433-01 9 131678540 131678540 G A LRRC8A Missense_Mutation p.E775K 0.16 tolerated(0.68) benign(0.022) TCGA-CV-7433-01 9 139412326 139412326 C A NOTCH1 Missense_Mutation p.C440F 0.33 deleterious(0) probably_damaging(0.997) TCGA-CV-7433-01 9 20885141 20885141 A G FOCAD Missense_Mutation p.Y846C 0.22 tolerated(0.12) possibly_damaging(0.598) TCGA-CV-7433-01 X 3239737 3239737 A G MXRA5 Missense_Mutation p.V1330A 0.16 tolerated(0.62) benign(0.015) TCGA-CV-7433-01 X 40990715 40990715 G T USP9X Missense_Mutation p.R83L 0.33 deleterious(0) possibly_damaging(0.867) TCGA-CV-7434-01 10 126682531 126682531 C A CTBP2 Silent p.V808V 0.37 TCGA-CV-7434-01 10 68139106 68139106 G T CTNNA3 Missense_Mutation p.S512R 0.30 tolerated(0.06) unknown(0) TCGA-CV-7434-01 10 74034470 74034470 G - DDIT4 Frame_Shift_Del p.V76Cfs*21 0.30 TCGA-CV-7434-01 11 105804580 105804580 G T GRIA4 Nonsense_Mutation p.E727* 0.38 TCGA-CV-7434-01 11 130275888 130275888 G A ADAMTS8 Silent p.N745N 0.19 TCGA-CV-7434-01 11 3121473 3121473 C T OSBPL5 Silent p.S512S 0.44 TCGA-CV-7434-01 11 55563815 55563815 T A OR5D14 Missense_Mutation p.C262S 0.40 deleterious(0.04) possibly_damaging(0.859) TCGA-CV-7434-01 11 63666242 63666242 A G MARK2 Silent p.V137V 0.23 TCGA-CV-7434-01 11 68552321 68552321 G A CPT1A Silent p.P375P 0.49 TCGA-CV-7434-01 11 69587998 69587998 G A FGF4 3'UTR 0.43 TCGA-CV-7434-01 12 108686279 108686279 C T CMKLR1 Missense_Mutation p.R154H 0.20 deleterious(0.01) possibly_damaging(0.496) TCGA-CV-7434-01 12 49435983 49435983 G A KMT2D Nonsense_Mutation p.Q2000* 0.53 TCGA-CV-7434-01 12 50044492 50044492 C A FMNL3 Missense_Mutation p.R656L 0.41 tolerated(0.95) probably_damaging(0.946) TCGA-CV-7434-01 12 51636287 51636287 C T DAZAP2 Nonsense_Mutation p.Q159* 0.29 TCGA-CV-7434-01 12 52451148 52451148 C A NR4A1 Silent p.G471G 0.32 TCGA-CV-7434-01 12 56506656 56506656 A G PA2G4 Missense_Mutation p.N390S 0.30 tolerated_low_confidence(0.16) benign(0.018) TCGA-CV-7434-01 12 72176380 72176380 T G RAB21 Nonsense_Mutation p.Y159* 0.32 TCGA-CV-7434-01 12 81545669 81545669 C A ACSS3 Nonsense_Mutation p.S323* 0.28 TCGA-CV-7434-01 13 103271177 103271177 C T TPP2 Missense_Mutation p.H201Y 0.25 tolerated(0.08) benign(0.048) TCGA-CV-7434-01 13 20025355 20025355 C T TPTE2 Missense_Mutation p.R251Q 0.30 tolerated(0.1) benign(0.013) TCGA-CV-7434-01 13 67802486 67802486 A T PCDH9 Silent p.T29T 0.38 TCGA-CV-7434-01 14 39509955 39509955 G A SEC23A Missense_Mutation p.T708I 0.47 deleterious(0) probably_damaging(0.993) TCGA-CV-7434-01 14 50597308 50597308 G T SOS2 Missense_Mutation p.P1083Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-CV-7434-01 14 70839651 70839651 G A SYNJ2BP 3'UTR 0.30 TCGA-CV-7434-01 14 89063145 89063145 G A ZC3H14 Missense_Mutation p.M449I 0.26 tolerated(0.54) benign(0.001) TCGA-CV-7434-01 14 91007854 91007854 G T TTC7B Missense_Mutation p.A797D 0.19 deleterious(0.03) possibly_damaging(0.462) TCGA-CV-7434-01 15 42292147 42292147 G A PLA2G4E Missense_Mutation p.L302F 0.36 deleterious(0.03) benign(0.124) TCGA-CV-7434-01 15 74490148 74490148 G A STRA6 Missense_Mutation p.S81F 0.10 deleterious(0.04) benign(0.022) TCGA-CV-7434-01 16 14029437 14029437 C T ERCC4 Missense_Mutation p.P550S 0.28 deleterious(0.03) possibly_damaging(0.831) TCGA-CV-7434-01 16 20570579 20570579 A G ACSM2B Missense_Mutation p.I123T 0.29 tolerated(0.58) benign(0.014) TCGA-CV-7434-01 16 28497943 28497943 G A CLN3 Silent p.G163G 0.25 TCGA-CV-7434-01 16 3788645 3788645 T A CREBBP Missense_Mutation p.I1437F 0.12 unknown(0) TCGA-CV-7434-01 16 3788646 3788646 A C CREBBP Missense_Mutation p.S1436R 0.16 unknown(0) TCGA-CV-7434-01 16 90038291 90038291 T G CENPBD1 Missense_Mutation p.S14R 0.26 deleterious(0.05) benign(0.023) TCGA-CV-7434-01 17 35631184 35631184 C T ACACA Missense_Mutation p.R303H 0.35 tolerated(0.16) benign(0.333) TCGA-CV-7434-01 17 40282496 40282496 G A RAB5C Nonsense_Mutation p.R42* 0.30 TCGA-CV-7434-01 17 7124963 7124963 A G ACADVL Missense_Mutation p.K218R 0.32 tolerated(0.05) benign(0.132) TCGA-CV-7434-01 17 74944756 74944756 A T MGAT5B Missense_Mutation p.M748L 0.29 tolerated(0.36) benign(0.177) TCGA-CV-7434-01 17 7578527 7578527 A - TP53 Frame_Shift_Del p.C135Afs*35 0.42 TCGA-CV-7434-01 18 13612655 13612655 G T LDLRAD4 Intron 0.20 TCGA-CV-7434-01 18 25593761 25593761 G C CDH2 Silent p.L95L 0.51 TCGA-CV-7434-01 19 11464486 11464486 G T CCDC159 Silent p.L236L 0.36 TCGA-CV-7434-01 19 11464488 11464488 A T CCDC159 Missense_Mutation p.Q237L 0.36 deleterious(0) possibly_damaging(0.843) TCGA-CV-7434-01 19 13319606 13319606 C T CACNA1A Silent p.S2248S 0.33 TCGA-CV-7434-01 19 14805946 14805946 G A ZNF333 Splice_Site p.X43_splice 0.34 TCGA-CV-7434-01 19 17941381 17941381 G A JAK3 Silent p.D1009D 0.39 TCGA-CV-7434-01 19 40520277 40520277 G A ZNF546 Missense_Mutation p.R367K 0.33 tolerated(0.37) benign(0.22) TCGA-CV-7434-01 19 43268311 43268311 T C PSG8 Missense_Mutation p.T63A 0.30 tolerated(1) benign(0.002) TCGA-CV-7434-01 19 50302996 50302996 G A AP2A1 Silent p.T415T 0.30 TCGA-CV-7434-01 19 51914599 51914599 T C SIGLEC10 Silent p.T616T 0.34 TCGA-CV-7434-01 19 58232346 58232346 G T ZNF671 Missense_Mutation p.Q370K 0.35 tolerated(1) benign(0.017) TCGA-CV-7434-01 1 103471421 103471421 C T COL11A1 Silent p.P606P 0.35 TCGA-CV-7434-01 1 111060811 111060811 C T KCNA10 Missense_Mutation p.R200H 0.38 deleterious(0.01) benign(0.293) TCGA-CV-7434-01 1 111147063 111147063 C T KCNA2 Silent p.R114R 0.27 TCGA-CV-7434-01 1 114310877 114310877 A G RSBN1 Missense_Mutation p.V598A 0.29 deleterious(0) probably_damaging(0.99) TCGA-CV-7434-01 1 114506106 114506106 G T HIPK1 Missense_Mutation p.G734V 0.33 deleterious(0.02) benign(0.057) TCGA-CV-7434-01 1 145562297 145562297 C T ANKRD35 Missense_Mutation p.A662V 0.29 deleterious(0) probably_damaging(0.994) TCGA-CV-7434-01 1 151512809 151512809 A G TUFT1 5'UTR 0.47 TCGA-CV-7434-01 1 152285838 152285838 C T FLG Silent p.A508A 0.34 TCGA-CV-7434-01 1 156846199 156846199 A C NTRK1 Missense_Mutation p.K547T 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7434-01 1 159846567 159846567 G T CCDC19 Intron 0.32 TCGA-CV-7434-01 1 16254617 16254617 C G SPEN Missense_Mutation p.Q628E 0.36 probably_damaging(0.966) TCGA-CV-7434-01 1 16915424 16915424 T C NBPF1 Missense_Mutation p.K138R 0.07 tolerated(0.17) possibly_damaging(0.486) TCGA-CV-7434-01 1 172634881 172634881 G T FASLG Missense_Mutation p.V191L 0.30 tolerated(0.09) possibly_damaging(0.649) TCGA-CV-7434-01 1 178423671 178423671 C G RASAL2 Missense_Mutation p.S700C 0.33 deleterious(0) probably_damaging(0.995) TCGA-CV-7434-01 1 186367550 186367550 C A C1orf27 Missense_Mutation p.P296T 0.48 tolerated(0.08) probably_damaging(0.92) TCGA-CV-7434-01 1 196309633 196309633 G A KCNT2 Nonsense_Mutation p.R541* 0.30 TCGA-CV-7434-01 1 228434319 228434319 C A OBSCN Missense_Mutation p.A1375D 0.42 probably_damaging(0.98) TCGA-CV-7434-01 1 231004121 231004121 G T C1orf198 Missense_Mutation p.D46E 0.48 tolerated(0.92) probably_damaging(0.996) TCGA-CV-7434-01 1 94668045 94668045 T G ARHGAP29 Intron 0.38 TCGA-CV-7434-01 20 13279750 13279750 C T ISM1 Missense_Mutation p.R347C 0.12 deleterious(0) probably_damaging(0.998) TCGA-CV-7434-01 20 25057052 25057052 C A VSX1 Missense_Mutation p.V315L 0.41 tolerated(0.86) benign(0.003) TCGA-CV-7434-01 20 34389470 34389470 G T PHF20 Missense_Mutation p.R9L 0.26 deleterious(0) possibly_damaging(0.609) TCGA-CV-7434-01 20 40730876 40730876 C A PTPRT Missense_Mutation p.R1201L 0.39 deleterious(0) probably_damaging(0.987) TCGA-CV-7434-01 20 42088474 42088474 G C SRSF6 Missense_Mutation p.R107P 0.39 deleterious(0) probably_damaging(0.995) TCGA-CV-7434-01 20 468128 468128 G A CSNK2A1 Nonsense_Mutation p.R306* 0.34 TCGA-CV-7434-01 22 28193502 28193502 C G MN1 Missense_Mutation p.W1010C 0.33 probably_damaging(0.993) TCGA-CV-7434-01 22 31286872 31286872 G A OSBP2 Missense_Mutation p.R594H 0.41 deleterious(0) probably_damaging(1) TCGA-CV-7434-01 22 37322077 37322077 G A CSF2RB Nonsense_Mutation p.W83* 0.24 TCGA-CV-7434-01 22 37695300 37695300 C T CYTH4 Silent p.F129F 0.31 TCGA-CV-7434-01 22 42000099 42000099 G C DESI1 Missense_Mutation p.T80R 0.21 deleterious(0.01) possibly_damaging(0.492) TCGA-CV-7434-01 22 50688829 50688829 C G HDAC10 Intron 0.43 TCGA-CV-7434-01 2 167055277 167055277 A G SCN9A Missense_Mutation p.Y1947H 0.18 deleterious(0) probably_damaging(1) TCGA-CV-7434-01 2 223497951 223497951 C A FARSB Missense_Mutation p.G228C 0.28 deleterious(0.03) probably_damaging(0.969) TCGA-CV-7434-01 2 232209757 232209757 T A ARMC9 Missense_Mutation p.L650Q 0.38 deleterious(0) probably_damaging(0.994) TCGA-CV-7434-01 2 56420052 56420052 G A CCDC85A Silent p.K239K 0.47 TCGA-CV-7434-01 2 97784187 97784187 A G ANKRD36 Missense_Mutation p.Y140C 0.58 tolerated(0.05) probably_damaging(0.985) TCGA-CV-7434-01 3 134884901 134884901 C T EPHB1 Silent p.I559I 0.22 TCGA-CV-7434-01 3 147128258 147128258 T C ZIC1 Missense_Mutation p.L120P 0.27 deleterious(0.03) probably_damaging(0.993) TCGA-CV-7434-01 3 182597414 182597414 A G ATP11B Missense_Mutation p.M795V 0.24 deleterious(0) benign(0.347) TCGA-CV-7434-01 3 191098615 191098615 A C CCDC50 Splice_Site p.X380_splice 0.20 TCGA-CV-7434-01 3 48451945 48451945 C A PLXNB1 Silent p.G1813G 0.44 TCGA-CV-7434-01 3 48510918 48510918 G T SHISA5 Missense_Mutation p.P162H 0.36 deleterious(0.03) probably_damaging(0.988) TCGA-CV-7434-01 3 49742142 49742142 A G RNF123 Missense_Mutation p.M638V 0.40 tolerated(0.2) benign(0.031) TCGA-CV-7434-01 4 104070291 104070291 C G CENPE Missense_Mutation p.R1224T 0.33 benign(0.219) TCGA-CV-7434-01 4 110442694 110442694 G T SEC24B Missense_Mutation p.R807L 0.45 deleterious(0) probably_damaging(1) TCGA-CV-7434-01 4 1244657 1244657 C T CTBP1 5'Flank 0.35 TCGA-CV-7434-01 4 185940787 185940787 C T HELT Nonsense_Mutation p.Q92* 0.18 TCGA-CV-7434-01 4 22439976 22439976 G A GPR125 Missense_Mutation p.R330C 0.39 deleterious(0) probably_damaging(1) TCGA-CV-7434-01 4 77676119 77676119 C T SHROOM3 Missense_Mutation p.R1495W 0.27 deleterious(0.01) benign(0) TCGA-CV-7434-01 5 137492876 137492876 A G BRD8 Intron 0.24 TCGA-CV-7434-01 5 140476883 140476883 C G PCDHB2 3'UTR 0.30 TCGA-CV-7434-01 5 156346537 156346537 T A TIMD4 Silent p.G356G 0.34 TCGA-CV-7434-01 5 5319256 5319256 G A ADAMTS16 3'UTR 0.38 TCGA-CV-7434-01 5 63905132 63905132 C T RGS7BP 3'UTR 0.25 TCGA-CV-7434-01 6 108370556 108370556 G A OSTM1 Missense_Mutation p.P284S 0.13 tolerated(0.09) benign(0.145) TCGA-CV-7434-01 6 108645100 108645100 G A LACE1 Missense_Mutation p.V71I 0.63 tolerated(0.26) benign(0.001) TCGA-CV-7434-01 6 117586867 117586867 T A VGLL2 5'UTR 0.50 TCGA-CV-7434-01 6 117865742 117865742 T - DCBLD1 Splice_Site p.X499_splice 0.18 TCGA-CV-7434-01 6 152949483 152949483 C A SYNE1 5'UTR 0.19 TCGA-CV-7434-01 6 160199796 160199796 C T ACAT2 Missense_Mutation p.R377C 0.23 deleterious(0.05) benign(0.017) TCGA-CV-7434-01 6 83937086 83937091 ATTCTG - ME1 In_Frame_Del p.A413_C415delinsG 0.14 TCGA-CV-7434-01 7 112424255 112424255 G T TMEM168 Missense_Mutation p.A209E 0.21 deleterious(0.01) benign(0.086) TCGA-CV-7434-01 7 5427413 5427413 G A TNRC18 Missense_Mutation p.P681L 0.36 probably_damaging(0.999) TCGA-CV-7434-01 8 139165127 139165127 C G FAM135B Missense_Mutation p.V531L 0.21 tolerated(1) benign(0) TCGA-CV-7434-01 8 145947838 145947839 TC - ZNF251 Frame_Shift_Del p.K403Tfs*5 0.14 TCGA-CV-7434-01 9 103091488 103091488 C A TEX10 Missense_Mutation p.R520L 0.20 deleterious(0) probably_damaging(0.989) TCGA-CV-7434-01 9 130507362 130507362 G A SH2D3C Silent p.A427A 0.37 TCGA-CV-7434-01 9 5233853 5233853 A G INSL4 Silent p.G132G 0.27 TCGA-CV-7434-01 9 84530443 84530443 G A SPATA31D5P RNA 0.34 TCGA-CV-7434-01 9 99522150 99522150 G C ZNF510 Nonsense_Mutation p.S321* 0.23 TCGA-CV-7434-01 X 21534662 21534662 C G CNKSR2 Missense_Mutation p.I290M 0.64 tolerated(0.07) possibly_damaging(0.852) TCGA-CV-7434-01 X 76776335 76776335 T C ATRX Silent p.Q2377Q 0.64 TCGA-CV-7435-01 10 118236711 118236712 AA - PNLIPRP3 3'UTR 0.19 TCGA-CV-7435-01 10 128191398 128191398 A G C10orf90 Intron 0.22 TCGA-CV-7435-01 10 135168929 135168929 A T FUOM Missense_Mutation p.L137H 0.19 deleterious(0) benign(0.146) TCGA-CV-7435-01 10 14870200 14870200 T C CDNF Missense_Mutation p.I63V 0.21 tolerated(0.15) benign(0.076) TCGA-CV-7435-01 10 55955480 55955480 G T PCDH15 Missense_Mutation p.P423H 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-7435-01 10 64148197 64148197 G A ZNF365 Silent p.E262E 0.10 TCGA-CV-7435-01 10 70333405 70333405 C T TET1 Missense_Mutation p.P437L 0.20 tolerated(0.79) benign(0.01) TCGA-CV-7435-01 10 85997363 85997363 G A LRIT1 Missense_Mutation p.R68W 0.13 deleterious(0) probably_damaging(0.976) TCGA-CV-7435-01 10 99437758 99437758 C T AVPI1 Silent p.L104L 0.28 TCGA-CV-7435-01 11 24750809 24750809 G A LUZP2 Missense_Mutation p.D53N 0.07 tolerated(0.07) benign(0.007) TCGA-CV-7435-01 11 31113007 31113007 G A DCDC1 Missense_Mutation p.H724Y 0.19 tolerated(0.16) benign(0.173) TCGA-CV-7435-01 11 63276452 63276452 G A LGALS12 Missense_Mutation p.E144K 0.26 deleterious(0.01) probably_damaging(0.917) TCGA-CV-7435-01 11 66134014 66134014 C T SLC29A2 Missense_Mutation p.S252N 0.11 tolerated(0.32) benign(0.359) TCGA-CV-7435-01 12 120168392 120168392 C A CIT Nonsense_Mutation p.E1132* 0.14 TCGA-CV-7435-01 12 27829391 27829391 G T PPFIBP1 Missense_Mutation p.G498W 0.04 deleterious(0.02) possibly_damaging(0.713) TCGA-CV-7435-01 12 48468185 48468185 T C SENP1 Missense_Mutation p.T288A 0.15 tolerated(0.38) benign(0.002) TCGA-CV-7435-01 12 49446699 49446699 T C KMT2D Missense_Mutation p.R371G 0.24 unknown(0) TCGA-CV-7435-01 12 50367087 50367087 C T AQP6 Missense_Mutation p.S44L 0.22 deleterious(0) probably_damaging(0.956) TCGA-CV-7435-01 12 51901258 51901258 G A SLC4A8 3'UTR 0.31 TCGA-CV-7435-01 12 76741323 76741323 A T BBS10 Missense_Mutation p.Y148N 0.14 tolerated(0.28) benign(0.079) TCGA-CV-7435-01 12 96377733 96377733 T C HAL Missense_Mutation p.K415E 0.33 tolerated(0.22) benign(0.042) TCGA-CV-7435-01 14 24760813 24760813 A G DHRS1 Missense_Mutation p.S225P 0.13 tolerated(0.22) benign(0.006) TCGA-CV-7435-01 14 50625280 50625280 T A SOS2 Intron 0.30 TCGA-CV-7435-01 14 62567240 62567240 C T SYT16 Nonsense_Mutation p.Q585* 0.31 TCGA-CV-7435-01 14 64496627 64496627 C G SYNE2 Missense_Mutation p.N2243K 0.16 benign(0.001) TCGA-CV-7435-01 14 65008353 65008353 C A HSPA2 Silent p.A262A 0.41 TCGA-CV-7435-01 15 65313852 65313852 C A MTFMT Missense_Mutation p.M215I 0.28 deleterious(0.01) possibly_damaging(0.899) TCGA-CV-7435-01 16 1831500 1831500 G T SPSB3 Intron 0.23 TCGA-CV-7435-01 16 20480920 20480920 G T ACSM2A Missense_Mutation p.A159S 0.27 deleterious(0) possibly_damaging(0.781) TCGA-CV-7435-01 16 21069448 21069448 T A DNAH3 Missense_Mutation p.T1295S 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-7435-01 16 27476027 27476027 C G GTF3C1 Missense_Mutation p.R1829T 0.19 tolerated(0.32) benign(0.002) TCGA-CV-7435-01 16 2812431 2812431 G T SRRM2 Missense_Mutation p.R634S 0.21 unknown(0) TCGA-CV-7435-01 16 321023 321023 C A RGS11 Silent p.G313G 0.07 TCGA-CV-7435-01 16 58592411 58592411 G T CNOT1 Missense_Mutation p.F766L 0.23 tolerated(0.67) benign(0.001) TCGA-CV-7435-01 17 29326075 29326075 T C RNF135 Missense_Mutation p.F389L 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7435-01 17 38285928 38285928 A G MSL1 Intron 0.25 TCGA-CV-7435-01 17 60032881 60032881 T A MED13 Missense_Mutation p.M1944L 0.14 tolerated(0.71) benign(0.011) TCGA-CV-7435-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7435-01 17 7734767 7734767 G C DNAH2 Silent p.G4173G 0.24 TCGA-CV-7435-01 17 78223009 78223009 A G SLC26A11 Missense_Mutation p.T527A 0.13 deleterious(0) probably_damaging(0.919) TCGA-CV-7435-01 18 18534911 18534911 T C ROCK1 Missense_Mutation p.H1229R 0.21 deleterious(0) possibly_damaging(0.656) TCGA-CV-7435-01 18 29211087 29211087 C T B4GALT6 Missense_Mutation p.R204H 0.34 deleterious(0) probably_damaging(0.983) TCGA-CV-7435-01 19 12126659 12126659 T G ZNF433 Missense_Mutation p.K341N 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-CV-7435-01 19 14640488 14640488 T G TECR 5'UTR 0.24 TCGA-CV-7435-01 19 22940586 22940586 C G ZNF99 Missense_Mutation p.E709Q 0.28 tolerated(0.1) probably_damaging(0.996) TCGA-CV-7435-01 19 3179854 3179854 T A S1PR4 Missense_Mutation p.L355Q 0.27 tolerated(0.13) probably_damaging(0.981) TCGA-CV-7435-01 19 42085740 42085740 C A CEACAM21 Missense_Mutation p.S153R 0.07 deleterious(0) benign(0.115) TCGA-CV-7435-01 19 53995785 53995785 G T ZNF813 3'UTR 0.14 TCGA-CV-7435-01 19 55174502 55174502 C T LILRB4 Missense_Mutation p.T6M 0.06 tolerated_low_confidence(0.15) benign(0.003) TCGA-CV-7435-01 19 9073955 9073955 C G MUC16 Missense_Mutation p.L4497F 0.25 unknown(0) TCGA-CV-7435-01 1 11596425 11596425 G T PTCHD2 Silent p.R1287R 0.46 TCGA-CV-7435-01 1 11596426 11596426 C T PTCHD2 Missense_Mutation p.H1288Y 0.45 deleterious(0) probably_damaging(0.987) TCGA-CV-7435-01 1 144879069 144879069 G A PDE4DIP Silent p.L1461L 0.06 TCGA-CV-7435-01 1 145281460 145281460 A G NOTCH2NL Silent p.K130K 0.09 TCGA-CV-7435-01 1 154543837 154543837 C T CHRNB2 Missense_Mutation p.R180C 0.09 deleterious(0.01) probably_damaging(0.953) TCGA-CV-7435-01 1 161132797 161132798 - T USP21 Frame_Shift_Ins p.A329Cfs*20 0.32 TCGA-CV-7435-01 1 173490489 173490489 C G SLC9C2 Missense_Mutation p.G897A 0.12 deleterious(0.02) benign(0.002) TCGA-CV-7435-01 1 179983098 179983098 C G CEP350 Missense_Mutation p.L504V 0.27 benign(0.019) TCGA-CV-7435-01 1 180794421 180794421 C T XPR1 Missense_Mutation p.L359F 0.25 deleterious(0.02) possibly_damaging(0.548) TCGA-CV-7435-01 1 190067993 190067993 T C BRINP3 Missense_Mutation p.I486V 0.12 tolerated(0.16) benign(0.002) TCGA-CV-7435-01 1 38227471 38227471 G A EPHA10 Silent p.I152I 0.30 TCGA-CV-7435-01 1 46654357 46654357 C A POMGNT1 3'UTR 0.09 TCGA-CV-7435-01 1 60314747 60314747 T G HOOK1 Silent p.V378V 0.28 TCGA-CV-7435-01 1 77632420 77632420 A - PIGK Frame_Shift_Del p.L158* 0.25 TCGA-CV-7435-01 20 45875011 45875011 G A ZMYND8 Silent p.S675S 0.16 TCGA-CV-7435-01 21 34897183 34897183 T C GART Missense_Mutation p.I397M 0.33 tolerated(0.16) benign(0.001) TCGA-CV-7435-01 21 37445198 37445198 A G CBR1 3'UTR 0.32 TCGA-CV-7435-01 2 199011631 199011631 G A PLCL1 Missense_Mutation p.R1078H 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-CV-7435-01 2 202899737 202899737 C T FZD7 Silent p.L123L 0.29 TCGA-CV-7435-01 2 232458286 232458286 A C C2orf57 Missense_Mutation p.E208D 0.07 tolerated(0.4) possibly_damaging(0.801) TCGA-CV-7435-01 2 71060135 71060136 - C CD207 Frame_Shift_Ins p.N205Efs*14 0.18 TCGA-CV-7435-01 2 9628388 9628388 T - IAH1 Frame_Shift_Del p.L226Rfs*8 0.23 TCGA-CV-7435-01 3 126224562 126224562 G A UROC1 Silent p.C265C 0.27 TCGA-CV-7435-01 3 150908705 150908705 A T MED12L Missense_Mutation p.D652V 0.24 deleterious(0.01) benign(0.171) TCGA-CV-7435-01 3 171394576 171394576 C T PLD1 Missense_Mutation p.A682T 0.14 deleterious(0) benign(0.06) TCGA-CV-7435-01 3 194081302 194081302 G A LRRC15 Silent p.H163H 0.11 TCGA-CV-7435-01 3 43122688 43122688 C G POMGNT2 Missense_Mutation p.C79S 0.29 deleterious(0) probably_damaging(0.977) TCGA-CV-7435-01 3 93769695 93769695 G A ARL13B Missense_Mutation p.R390K 0.24 tolerated(0.13) possibly_damaging(0.77) TCGA-CV-7435-01 4 156274418 156274418 C A MAP9 Missense_Mutation p.K485N 0.14 deleterious(0) probably_damaging(0.978) TCGA-CV-7435-01 4 187629852 187629853 - T FAT1 Frame_Shift_Ins p.S377Kfs*2 0.29 TCGA-CV-7435-01 5 112173816 112173816 A T APC Missense_Mutation p.D842V 0.26 benign(0.053) TCGA-CV-7435-01 5 131911505 131911505 C T RAD50 Silent p.L84L 0.20 TCGA-CV-7435-01 5 146077680 146077680 C T PPP2R2B Missense_Mutation p.E69K 0.39 deleterious(0.01) benign(0.197) TCGA-CV-7435-01 5 167812359 167812359 C T WWC1 Nonsense_Mutation p.Q125* 0.35 TCGA-CV-7435-01 5 41065470 41065470 G A MROH2B Silent p.F108F 0.39 TCGA-CV-7435-01 6 26205057 26205057 T G HIST1H4E Missense_Mutation p.F62C 0.13 deleterious(0) probably_damaging(1) TCGA-CV-7435-01 6 31743155 31743155 G T VWA7 Missense_Mutation p.P189T 0.36 tolerated(0.2) probably_damaging(0.997) TCGA-CV-7435-01 6 54804590 54804590 G A FAM83B Missense_Mutation p.R274K 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-7435-01 6 90497660 90497660 G A MDN1 Missense_Mutation p.P416L 0.39 probably_damaging(0.969) TCGA-CV-7435-01 7 131194197 131194197 C T PODXL Missense_Mutation p.S317N 0.34 tolerated(0.17) benign(0.008) TCGA-CV-7435-01 7 7636027 7636027 G A MIOS Missense_Mutation p.R779Q 0.07 deleterious(0) probably_damaging(0.991) TCGA-CV-7435-01 7 80435066 80435066 G A SEMA3C Missense_Mutation p.L183F 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7435-01 7 82387992 82387992 T G PCLO Missense_Mutation p.T5110P 0.23 unknown(0) TCGA-CV-7435-01 8 117671059 117671059 G A EIF3H Silent p.L150L 0.17 TCGA-CV-7435-01 8 12586780 12586780 G C LONRF1 Missense_Mutation p.L584V 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-7435-01 8 30890027 30890027 C T PURG Nonsense_Mutation p.W91* 0.37 TCGA-CV-7435-01 9 100672670 100672670 T C C9orf156 Missense_Mutation p.H213R 0.28 tolerated(0.6) benign(0.001) TCGA-CV-7435-01 9 131221864 131221864 G A ODF2 Silent p.K17K 0.46 TCGA-CV-7435-01 9 71503904 71503904 T A PIP5K1B Missense_Mutation p.I109N 0.35 deleterious(0) probably_damaging(0.939) TCGA-CV-7435-01 9 88293287 88293287 A T AGTPBP1 Silent p.L84L 0.21 TCGA-CV-7435-01 X 101624640 101624640 C T NXF2B Missense_Mutation p.R84Q 0.19 tolerated(0.36) benign(0.008) TCGA-CV-7435-01 X 14883285 14883285 A G FANCB Silent p.N116N 0.24 TCGA-CV-7435-01 X 30577998 30577998 A T CXorf21 Missense_Mutation p.S159T 0.28 tolerated(0.06) possibly_damaging(0.701) TCGA-CV-7435-01 X 37026592 37026592 C T FAM47C Missense_Mutation p.R37C 0.40 tolerated(0.1) probably_damaging(0.993) TCGA-CV-7435-01 X 47918974 47918974 G A ZNF630 Missense_Mutation p.T286I 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7435-01 X 65476116 65476116 A G HEPH Missense_Mutation p.D1001G 0.19 tolerated(0.11) benign(0.102) TCGA-CV-7437-01 10 125771991 125771991 C G CHST15 Missense_Mutation p.R451S 0.25 deleterious(0.03) probably_damaging(0.93) TCGA-CV-7437-01 10 18280093 18280093 A T SLC39A12 Missense_Mutation p.H428L 0.20 deleterious(0) probably_damaging(0.939) TCGA-CV-7437-01 10 45799805 45799805 A G OR13A1 Silent p.S22S 0.28 TCGA-CV-7437-01 10 64022543 64022543 C T RTKN2 Missense_Mutation p.R33Q 0.21 deleterious(0.01) benign(0.207) TCGA-CV-7437-01 10 91174545 91174545 G A IFIT5 5'UTR 0.29 TCGA-CV-7437-01 10 931622 931622 G A LARP4B Nonsense_Mutation p.Q14* 0.38 TCGA-CV-7437-01 10 98742657 98742657 G A C10orf12 Missense_Mutation p.D504N 0.33 deleterious(0) probably_damaging(1) TCGA-CV-7437-01 10 99371333 99371333 C T HOGA1 Missense_Mutation p.P301S 0.35 tolerated(0.5) benign(0.055) TCGA-CV-7437-01 11 12030045 12030045 A T DKK3 Missense_Mutation p.S29T 0.18 tolerated(0.55) unknown(0) TCGA-CV-7437-01 11 14504607 14504607 C G COPB1 Missense_Mutation p.E310Q 0.80 tolerated(0.61) benign(0.063) TCGA-CV-7437-01 11 44146485 44146485 G A EXT2 Missense_Mutation p.R330H 0.20 tolerated(0.11) benign(0.022) TCGA-CV-7437-01 11 5809550 5809550 T C OR52N1 Missense_Mutation p.K166R 0.29 tolerated(0.72) benign(0.215) TCGA-CV-7437-01 11 62571396 62571396 G A NXF1 Missense_Mutation p.P28L 0.34 tolerated(0.53) benign(0.038) TCGA-CV-7437-01 11 64510284 64510284 C T RASGRP2 Missense_Mutation p.G19R 0.21 tolerated(0.53) benign(0.069) TCGA-CV-7437-01 11 65064593 65064608 TGTCCTCGGCTGTGTC - POLA2 Frame_Shift_Del p.L552* 0.26 TCGA-CV-7437-01 11 66612403 66612403 C T RCE1 Missense_Mutation p.P172L 0.67 deleterious(0) probably_damaging(1) TCGA-CV-7437-01 11 76750656 76750656 G A B3GNT6 Missense_Mutation p.V21M 0.67 tolerated(0.35) benign(0.006) TCGA-CV-7437-01 12 49435964 49435964 C T KMT2D Nonsense_Mutation p.W2006* 0.77 TCGA-CV-7437-01 12 49950962 49950966 ACAGA - KCNH3 Splice_Site p.X859_splice 0.33 TCGA-CV-7437-01 12 53918430 53918430 C A ATF7 Missense_Mutation p.R348L 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7437-01 12 55615608 55615608 C T OR10A7 Missense_Mutation p.S267F 0.16 deleterious(0.02) benign(0.303) TCGA-CV-7437-01 12 56221350 56221350 G A DNAJC14 Missense_Mutation p.L365F 0.23 tolerated(0.1) possibly_damaging(0.642) TCGA-CV-7437-01 12 56815168 56815168 C T TIMELESS Silent p.K945K 0.53 TCGA-CV-7437-01 12 57454716 57454716 C T TMEM194A Silent p.K331K 0.25 TCGA-CV-7437-01 12 7169971 7169971 G A C1S Silent p.A66A 0.19 TCGA-CV-7437-01 12 7302138 7302138 G T CLSTN3 Silent p.S698S 0.41 TCGA-CV-7437-01 12 81648732 81648732 T G ACSS3 3'UTR 0.54 TCGA-CV-7437-01 12 83324299 83324299 A G TMTC2 Missense_Mutation p.N525D 0.17 deleterious(0.01) possibly_damaging(0.878) TCGA-CV-7437-01 12 8800752 8800752 G A MFAP5 Missense_Mutation p.R153C 0.32 deleterious(0) probably_damaging(1) TCGA-CV-7437-01 13 39265184 39265184 C A FREM2 Missense_Mutation p.H1235N 0.18 tolerated(0.06) probably_damaging(0.99) TCGA-CV-7437-01 13 92380812 92380812 A T GPC5 Silent p.V349V 0.10 TCGA-CV-7437-01 13 96675306 96675306 T A UGGT2 Missense_Mutation p.K158I 0.28 deleterious(0.04) probably_damaging(0.928) TCGA-CV-7437-01 14 33293503 33293503 G A AKAP6 Missense_Mutation p.G2162S 0.63 deleterious_low_confidence(0.01) benign(0.021) TCGA-CV-7437-01 14 57938034 57938034 T C C14orf105 3'UTR 0.34 TCGA-CV-7437-01 14 58471868 58471868 T G C14orf37 Silent p.V718V 0.49 TCGA-CV-7437-01 14 62233670 62233672 CCA - SNAPC1 In_Frame_Del p.P69del 0.38 TCGA-CV-7437-01 14 75182665 75182665 C G FCF1 Missense_Mutation p.P52R 0.06 deleterious(0.02) benign(0.211) TCGA-CV-7437-01 14 90650616 90650616 C T KCNK13 Missense_Mutation p.R166W 0.06 deleterious(0.01) benign(0.097) TCGA-CV-7437-01 14 95584087 95584087 T C DICER1 Missense_Mutation p.I461V 0.16 deleterious(0.02) possibly_damaging(0.746) TCGA-CV-7437-01 15 48063143 48063143 G T SEMA6D Missense_Mutation p.A795S 0.30 tolerated(0.74) benign(0.021) TCGA-CV-7437-01 15 82456255 82456259 AAATG - EFTUD1 Frame_Shift_Del p.P606Hfs*16 0.22 TCGA-CV-7437-01 16 29993064 29993064 G T TAOK2 Missense_Mutation p.Q246H 0.18 deleterious(0) possibly_damaging(0.908) TCGA-CV-7437-01 16 88598407 88598408 - AGAAG ZFPM1 Intron p.D239Efs*87 0.19 TCGA-CV-7437-01 17 67302927 67302927 C T ABCA5 Missense_Mutation p.E243K 0.28 deleterious(0.04) benign(0.434) TCGA-CV-7437-01 17 71223343 71223343 A G FAM104A Silent p.S94S 0.16 TCGA-CV-7437-01 17 72764881 72764881 C G SLC9A3R1 3'UTR 0.56 TCGA-CV-7437-01 17 7579336 7579336 C - TP53 Frame_Shift_Del p.T118Qfs*5 0.45 TCGA-CV-7437-01 18 23619368 23619369 - C SS18 Frame_Shift_Ins p.G221Rfs*19 0.39 TCGA-CV-7437-01 18 59166671 59166671 G A CDH20 Missense_Mutation p.D167N 0.25 tolerated(0.09) benign(0.003) TCGA-CV-7437-01 18 6943269 6943269 C A LAMA1 Missense_Mutation p.V2993F 0.76 deleterious(0) probably_damaging(0.986) TCGA-CV-7437-01 18 77659522 77659522 C T KCNG2 Silent p.T369T 0.60 TCGA-CV-7437-01 19 12501172 12501172 C A ZNF799 3'UTR 0.33 TCGA-CV-7437-01 19 15784508 15784508 C T CYP4F12 Missense_Mutation p.R57W 0.04 deleterious(0.05) benign(0.032) TCGA-CV-7437-01 19 2223362 2223362 A G DOT1L Missense_Mutation p.Q1158R 0.15 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-CV-7437-01 19 40408592 40408592 C T FCGBP Missense_Mutation p.G1416D 0.67 probably_damaging(1) TCGA-CV-7437-01 19 47998967 47998967 C G NAPA Intron 0.74 TCGA-CV-7437-01 19 4816803 4816803 C A TICAM1 Missense_Mutation p.K529N 0.37 tolerated(0.06) benign(0.027) TCGA-CV-7437-01 19 49993179 49993179 G A RPL13A Missense_Mutation p.G30S 0.27 deleterious(0.01) possibly_damaging(0.73) TCGA-CV-7437-01 19 53302738 53302738 T C ZNF28 3'UTR 0.33 TCGA-CV-7437-01 19 55687172 55687172 G A SYT5 Missense_Mutation p.R149W 0.25 deleterious(0) possibly_damaging(0.773) TCGA-CV-7437-01 19 56042631 56042631 G C SBK2 Missense_Mutation p.S112W 0.17 tolerated(0.1) probably_damaging(0.965) TCGA-CV-7437-01 19 5867388 5867388 C T FUT5 Missense_Mutation p.D117N 0.35 tolerated(0.21) possibly_damaging(0.686) TCGA-CV-7437-01 1 111216794 111216794 C - KCNA3 Frame_Shift_Del p.R213Pfs*116 0.55 TCGA-CV-7437-01 1 120467945 120467945 C T NOTCH2 Silent p.G1498G 0.06 TCGA-CV-7437-01 1 150128284 150128284 G T PLEKHO1 Nonsense_Mutation p.E68* 0.04 TCGA-CV-7437-01 1 152281214 152281214 G T FLG Missense_Mutation p.H2050N 0.03 benign(0.322) TCGA-CV-7437-01 1 155292476 155292476 C T RUSC1 Silent p.S304S 0.22 TCGA-CV-7437-01 1 1586909 1586909 G T CDK11B Silent p.S47S 0.56 TCGA-CV-7437-01 1 167400951 167400951 G A CD247 Silent p.D154D 0.03 TCGA-CV-7437-01 1 173881055 173881055 G T SERPINC1 Missense_Mutation p.S169Y 0.09 deleterious(0.02) probably_damaging(0.988) TCGA-CV-7437-01 1 186275519 186275519 G C PRG4 Missense_Mutation p.G223A 0.22 probably_damaging(0.999) TCGA-CV-7437-01 1 196642255 196642255 G T CFH Missense_Mutation p.G69V 0.60 deleterious(0) probably_damaging(1) TCGA-CV-7437-01 1 206224960 206224960 C T AVPR1B Silent p.L174L 0.11 TCGA-CV-7437-01 1 212216332 212216332 T C DTL Intron 0.24 TCGA-CV-7437-01 1 230468601 230468601 G A PGBD5 Missense_Mutation p.P352L 0.33 deleterious(0.03) benign(0.059) TCGA-CV-7437-01 1 33235551 33235551 C T KIAA1522 Silent p.P257P 0.44 TCGA-CV-7437-01 1 46810800 46810800 C T NSUN4 Missense_Mutation p.R141C 0.23 deleterious(0.03) benign(0.248) TCGA-CV-7437-01 1 92495663 92495663 C G EPHX4 Silent p.P9P 0.56 TCGA-CV-7437-01 20 23016973 23016973 G A SSTR4 Missense_Mutation p.V285M 0.24 deleterious(0.04) benign(0.072) TCGA-CV-7437-01 20 30486334 30486334 C T TTLL9 Missense_Mutation p.L58F 0.35 tolerated(0.09) benign(0.38) TCGA-CV-7437-01 20 31677343 31677343 G C BPIFB4 Missense_Mutation p.D344H 0.45 deleterious(0.04) probably_damaging(0.912) TCGA-CV-7437-01 20 50234077 50234077 G A ATP9A Silent p.D789D 0.35 TCGA-CV-7437-01 20 8745992 8745992 G T PLCB1 Missense_Mutation p.D973Y 0.55 deleterious(0.04) benign(0.092) TCGA-CV-7437-01 21 15538694 15538694 G C LIPI Nonsense_Mutation p.S262* 0.28 TCGA-CV-7437-01 22 18022469 18022469 G T CECR2 Missense_Mutation p.M858I 0.29 deleterious(0) probably_damaging(0.981) TCGA-CV-7437-01 22 21349206 21349206 G A LZTR1 Silent p.V611V 0.32 TCGA-CV-7437-01 22 28196406 28196418 CCCAGTGTGGAAA - MN1 Frame_Shift_Del p.F39Gfs*10 0.19 TCGA-CV-7437-01 22 36698676 36698678 GGA - MYH9 In_Frame_Del p.L812del 0.43 TCGA-CV-7437-01 22 42383247 42383247 C T SEPT3 Silent p.V123V 0.28 TCGA-CV-7437-01 22 47054120 47054120 C T GRAMD4 Missense_Mutation p.A107V 0.18 tolerated(1) benign(0.028) TCGA-CV-7437-01 2 130951598 130951598 C T TUBA3E Missense_Mutation p.A273T 0.16 deleterious_low_confidence(0.01) benign(0.162) TCGA-CV-7437-01 2 160204131 160204131 C T BAZ2B Missense_Mutation p.E1774K 0.29 benign(0.041) TCGA-CV-7437-01 2 162274717 162274717 C T TBR1 Missense_Mutation p.R285W 0.36 deleterious(0) benign(0.348) TCGA-CV-7437-01 2 178098962 178098962 A G NFE2L2 Missense_Mutation p.I28T 0.56 deleterious(0) probably_damaging(0.98) TCGA-CV-7437-01 2 179463494 179463494 C T TTN Silent p.A18981A 0.26 TCGA-CV-7437-01 2 179517412 179517412 G A TTN Missense_Mutation p.P13004L 0.39 TCGA-CV-7437-01 2 19552911 19552911 C T OSR1 Missense_Mutation p.R219Q 0.41 deleterious(0.02) probably_damaging(1) TCGA-CV-7437-01 2 215645436 215645436 T C BARD1 Missense_Mutation p.I388V 0.05 tolerated(0.54) benign(0.003) TCGA-CV-7437-01 2 223161823 223161823 G T PAX3 Missense_Mutation p.H65Q 0.67 tolerated(0.33) probably_damaging(0.999) TCGA-CV-7437-01 2 43927243 43927243 C T PLEKHH2 Silent p.S382S 0.45 TCGA-CV-7437-01 2 44078781 44078781 C G ABCG8 Missense_Mutation p.I127M 0.46 tolerated(0.41) benign(0.062) TCGA-CV-7437-01 2 95815442 95815442 C A ZNF514 Missense_Mutation p.S263I 0.18 tolerated(0.15) benign(0.345) TCGA-CV-7437-01 2 95815453 95815453 G C ZNF514 Silent p.P259P 0.18 TCGA-CV-7437-01 3 113672830 113672830 C T ZDHHC23 Silent p.L149L 0.26 TCGA-CV-7437-01 3 157820514 157820514 G A SHOX2 Nonsense_Mutation p.R194* 0.08 TCGA-CV-7437-01 3 159605682 159605682 C T IQCJ-SCHIP1 Silent p.P470P 0.18 TCGA-CV-7437-01 3 169540507 169540507 G A LRRIQ4 Silent p.G266G 0.06 TCGA-CV-7437-01 3 169840414 169840414 C G PHC3 Missense_Mutation p.R636T 0.05 tolerated(0.08) benign(0.295) TCGA-CV-7437-01 3 173322306 173322306 C T NLGN1 5'UTR 0.07 TCGA-CV-7437-01 3 39170771 39170771 G A TTC21A Missense_Mutation p.R709K 0.57 tolerated(1) benign(0.001) TCGA-CV-7437-01 3 65376930 65376930 G A MAGI1 Missense_Mutation p.P768L 0.67 deleterious(0.03) benign(0.12) TCGA-CV-7437-01 4 123377563 123377563 T C IL2 Silent p.A11A 0.63 TCGA-CV-7437-01 4 145581029 145581029 C T HHIP Intron 0.33 TCGA-CV-7437-01 4 187205256 187205256 C T F11 Silent p.T382T 0.54 TCGA-CV-7437-01 4 187630669 187630692 TATTTCCTCCTTTGGTCCTTATTC GA FAT1 Frame_Shift_Del p.R97Ifs*9 0.61 TCGA-CV-7437-01 4 40122594 40122594 G A N4BP2 Missense_Mutation p.E955K 0.44 tolerated(0.11) benign(0.008) TCGA-CV-7437-01 4 73149358 73149358 G A ADAMTS3 Missense_Mutation p.S1038F 0.05 deleterious(0) benign(0.293) TCGA-CV-7437-01 4 99363336 99363336 C A RAP1GDS1 3'UTR 0.43 TCGA-CV-7437-01 5 10239377 10239377 C T FAM173B Nonsense_Mutation p.W36* 0.33 TCGA-CV-7437-01 5 11364898 11364898 C T CTNND2 Missense_Mutation p.V428I 0.21 deleterious(0.01) benign(0.156) TCGA-CV-7437-01 5 13830755 13830755 G A DNAH5 Silent p.F2004F 0.16 TCGA-CV-7437-01 5 140176624 140176624 C T PCDHA2 Missense_Mutation p.T692M 0.29 deleterious_low_confidence(0.02) benign(0.035) TCGA-CV-7437-01 5 140215817 140215817 G A PCDHA7 Missense_Mutation p.G617S 0.39 tolerated_low_confidence(0.19) benign(0.013) TCGA-CV-7437-01 5 140431883 140431883 G T PCDHB1 Silent p.A276A 0.15 TCGA-CV-7437-01 5 140503686 140503686 C G PCDHB4 Missense_Mutation p.F702L 0.25 tolerated_low_confidence(0.46) benign(0.001) TCGA-CV-7437-01 5 140554402 140554402 G T PCDHB7 Silent p.L662L 0.21 TCGA-CV-7437-01 5 140590512 140590512 C T PCDHB12 Missense_Mutation p.P678L 0.07 tolerated_low_confidence(0.09) benign(0.004) TCGA-CV-7437-01 5 1416215 1416215 G T SLC6A3 Nonsense_Mutation p.Y343* 0.19 TCGA-CV-7437-01 5 156770492 156770492 G T FNDC9 Nonsense_Mutation p.S18* 0.27 TCGA-CV-7437-01 5 171849445 171849445 C T SH3PXD2B Missense_Mutation p.R44H 0.29 deleterious(0) probably_damaging(0.993) TCGA-CV-7437-01 5 36049095 36049095 A G UGT3A2 Missense_Mutation p.W247R 0.45 deleterious(0) possibly_damaging(0.756) TCGA-CV-7437-01 5 36111350 36111350 G A LMBRD2 Missense_Mutation p.R551C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-7437-01 6 32847145 32847145 G A PPP1R2P1 RNA 0.33 TCGA-CV-7437-01 6 38951989 38951989 C T DNAH8 Missense_Mutation p.S4103L 0.20 probably_damaging(0.916) TCGA-CV-7437-01 6 407576 407576 G A IRF4 Missense_Mutation p.R445H 0.30 tolerated_low_confidence(0.14) benign(0.007) TCGA-CV-7437-01 6 56471961 56471961 G A DST Intron 0.21 TCGA-CV-7437-01 6 6266932 6266932 G T F13A1 Silent p.R144R 0.32 TCGA-CV-7437-01 7 108213555 108213555 C T DNAJB9 Missense_Mutation p.R144C 0.25 deleterious(0) benign(0.386) TCGA-CV-7437-01 7 121943848 121943848 C G FEZF1 Missense_Mutation p.G215A 0.29 tolerated(0.35) probably_damaging(0.996) TCGA-CV-7437-01 7 123593871 123593871 G A SPAM1 Missense_Mutation p.A83T 0.42 tolerated(0.18) benign(0.067) TCGA-CV-7437-01 7 127014179 127014179 G C ZNF800 Nonsense_Mutation p.S404* 0.32 TCGA-CV-7437-01 7 141408502 141408502 C G WEE2 5'UTR 0.30 TCGA-CV-7437-01 7 141418927 141418927 A T WEE2 Missense_Mutation p.E214V 0.52 deleterious(0) probably_damaging(0.998) TCGA-CV-7437-01 7 141721402 141721402 A C MGAM Missense_Mutation p.N192T 0.23 tolerated(0.22) benign(0.005) TCGA-CV-7437-01 7 150174742 150174742 G T GIMAP8 Silent p.L624L 0.19 TCGA-CV-7437-01 7 150745883 150745883 G A ASIC3 5'Flank 0.51 TCGA-CV-7437-01 7 21730399 21730399 G A DNAH11 Missense_Mutation p.E1988K 0.19 benign(0.347) TCGA-CV-7437-01 7 23561437 23561437 G T TRA2A Missense_Mutation p.S20Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-CV-7437-01 7 4901062 4901062 C T PAPOLB Missense_Mutation p.R126Q 0.26 deleterious(0) possibly_damaging(0.901) TCGA-CV-7437-01 7 56007358 56007358 C T ZNF713 Nonsense_Mutation p.Q318* 0.21 TCGA-CV-7437-01 7 56120139 56120139 C T CCT6A Silent p.I54I 0.36 TCGA-CV-7437-01 7 5982958 5982958 C T RSPH10B Silent p.L585L 0.24 TCGA-CV-7437-01 7 73477973 73477973 C T ELN Silent p.L647L 0.42 TCGA-CV-7437-01 7 81620503 81620503 G C CACNA2D1 Nonsense_Mutation p.Y598* 0.33 TCGA-CV-7437-01 7 8790658 8790658 G A NXPH1 Silent p.T25T 0.47 TCGA-CV-7437-01 8 11660408 11660408 G A FDFT1 Missense_Mutation p.G23S 0.21 tolerated(0.15) benign(0.162) TCGA-CV-7437-01 8 22864371 22864371 C T RHOBTB2 Nonsense_Mutation p.R227* 0.32 TCGA-CV-7437-01 8 38264944 38264944 C A LETM2 Nonsense_Mutation p.S412* 0.24 TCGA-CV-7437-01 8 59764139 59764139 C T TOX Missense_Mutation p.A213T 0.16 tolerated(0.07) probably_damaging(0.98) TCGA-CV-7437-01 8 73849229 73849229 A G KCNB2 Missense_Mutation p.I547V 0.20 deleterious_low_confidence(0.02) benign(0.42) TCGA-CV-7437-01 8 79588079 79588079 C A ZC2HC1A Missense_Mutation p.T25K 0.19 deleterious(0.02) possibly_damaging(0.9) TCGA-CV-7437-01 8 87660048 87660048 C G CNGB3 Missense_Mutation p.R324T 0.17 deleterious(0) probably_damaging(1) TCGA-CV-7437-01 8 9588487 9588487 G A TNKS Missense_Mutation p.V697M 0.85 deleterious(0.02) possibly_damaging(0.777) TCGA-CV-7437-01 9 134473675 134473675 G C RAPGEF1 Missense_Mutation p.L674V 0.37 tolerated(0.32) benign(0.009) TCGA-CV-7437-01 9 27524569 27524569 A G IFNK Missense_Mutation p.M79V 0.29 tolerated(1) benign(0.003) TCGA-CV-7437-01 9 73151427 73151427 G A TRPM3 Silent p.S1522S 0.66 TCGA-CV-7437-01 9 95609196 95609196 C T ZNF484 Missense_Mutation p.V627I 0.36 tolerated(0.07) probably_damaging(0.941) TCGA-CV-7437-01 X 14748410 14748410 G A GLRA2 Missense_Mutation p.A388T 0.04 tolerated(0.36) benign(0.006) TCGA-CV-7437-01 X 15270437 15270437 G A ASB9 Silent p.H124H 0.79 TCGA-CV-7438-01 10 133962932 133962932 C T JAKMIP3 Missense_Mutation p.S622L 0.32 deleterious(0.02) probably_damaging(1) TCGA-CV-7438-01 10 72511852 72511852 G T ADAMTS14 Silent p.G869G 0.27 TCGA-CV-7438-01 10 97956812 97956812 G C BLNK Nonsense_Mutation p.S368* 0.12 TCGA-CV-7438-01 11 1213258 1213258 C G MUC5AC RNA 0.12 TCGA-CV-7438-01 11 130079766 130079766 C T ST14 3'UTR 0.19 TCGA-CV-7438-01 11 28084055 28084055 C A KIF18A Missense_Mutation p.K533N 0.31 tolerated(0.58) benign(0) TCGA-CV-7438-01 11 3680852 3680852 C G ART1 Missense_Mutation p.Q35E 0.23 deleterious(0.02) benign(0.004) TCGA-CV-7438-01 11 56144000 56144000 C G OR8U1 Missense_Mutation p.L301V 0.15 tolerated(0.09) benign(0.021) TCGA-CV-7438-01 11 65304114 65304114 C T SCYL1 Missense_Mutation p.A570V 0.14 deleterious(0) probably_damaging(0.976) TCGA-CV-7438-01 11 66811318 66811318 G A SYT12 Silent p.Q277Q 0.22 TCGA-CV-7438-01 11 70007358 70007358 G A ANO1 Missense_Mutation p.R557Q 0.24 deleterious(0.03) probably_damaging(0.971) TCGA-CV-7438-01 11 86662820 86662820 A G FZD4 Silent p.T326T 0.15 TCGA-CV-7438-01 12 102872340 102872340 T C IGF1 Intron 0.28 TCGA-CV-7438-01 12 20801805 20801805 G A PDE3A Missense_Mutation p.V917I 0.22 deleterious(0.01) benign(0.031) TCGA-CV-7438-01 12 2909727 2909727 T C FKBP4 Missense_Mutation p.I339T 0.19 tolerated(0.11) benign(0.031) TCGA-CV-7438-01 12 53680134 53680134 C T ESPL1 Missense_Mutation p.S1205F 0.22 tolerated(0.07) benign(0.006) TCGA-CV-7438-01 12 57571375 57571375 G T LRP1 Splice_Site p.X1454_splice 0.31 TCGA-CV-7438-01 12 59272720 59272720 C A LRIG3 Nonsense_Mutation p.E657* 0.08 TCGA-CV-7438-01 12 6981568 6981569 TC - SPSB2 Frame_Shift_Del p.R166Tfs*125 0.26 TCGA-CV-7438-01 12 81762943 81762943 G A PPFIA2 Missense_Mutation p.R433C 0.20 deleterious(0) probably_damaging(0.961) TCGA-CV-7438-01 12 989016 989016 C T WNK1 Missense_Mutation p.A884V 0.20 tolerated(0.06) benign(0.06) TCGA-CV-7438-01 13 21375044 21375044 C A XPO4 Missense_Mutation p.G635C 0.19 tolerated(0.1) benign(0.042) TCGA-CV-7438-01 13 32339254 32339254 A C RXFP2 Missense_Mutation p.M134L 0.07 tolerated(0.68) benign(0) TCGA-CV-7438-01 14 105201381 105201381 G T ADSSL1 Missense_Mutation p.V116L 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-CV-7438-01 14 47530570 47530570 T C MDGA2 Silent p.T469T 0.04 TCGA-CV-7438-01 14 68050595 68050595 G A PLEKHH1 Silent p.Q1188Q 0.23 TCGA-CV-7438-01 14 68050596 68050596 C T PLEKHH1 Silent p.L1189L 0.23 TCGA-CV-7438-01 14 69257020 69257020 C G ZFP36L1 Missense_Mutation p.D83H 0.30 tolerated(0.11) benign(0.383) TCGA-CV-7438-01 14 75230471 75230471 G - YLPM1 Frame_Shift_Del p.G95Afs*124 0.21 TCGA-CV-7438-01 15 45428812 45428812 C T DUOX1 Silent p.G337G 0.17 TCGA-CV-7438-01 15 50867173 50867173 G A TRPM7 Missense_Mutation p.T1632I 0.21 deleterious(0) possibly_damaging(0.834) TCGA-CV-7438-01 15 75042710 75042710 G A CYP1A2 Missense_Mutation p.E211K 0.12 deleterious(0.01) benign(0.001) TCGA-CV-7438-01 16 15110041 15110041 G C PDXDC1 Missense_Mutation p.E261D 0.11 tolerated(0.59) benign(0.009) TCGA-CV-7438-01 16 70941323 70941323 G A HYDIN Missense_Mutation p.T2823M 0.31 benign(0.051) TCGA-CV-7438-01 16 72110502 72110502 G A HPR Missense_Mutation p.G190E 0.16 deleterious(0) probably_damaging(0.98) TCGA-CV-7438-01 16 84270496 84270496 C T KCNG4 Missense_Mutation p.R199H 0.29 tolerated(0.11) probably_damaging(0.97) TCGA-CV-7438-01 17 10542363 10542363 C G MYH3 Missense_Mutation p.K1082N 0.25 deleterious(0) benign(0.31) TCGA-CV-7438-01 17 29701213 29701213 G C NF1 3'UTR 0.42 TCGA-CV-7438-01 17 3785559 3785559 G A CAMKK1 Missense_Mutation p.A264V 0.06 tolerated_low_confidence(0.5) unknown(0) TCGA-CV-7438-01 17 39740142 39740142 C G KRT14 Missense_Mutation p.G266A 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-CV-7438-01 17 47679366 47679366 C A SPOP Missense_Mutation p.A281S 0.47 tolerated(0.05) possibly_damaging(0.491) TCGA-CV-7438-01 17 74099798 74099798 T C EXOC7 5'UTR 0.14 TCGA-CV-7438-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.52 TCGA-CV-7438-01 18 11872355 11872355 G C GNAL Missense_Mutation p.D374H 0.24 deleterious(0.02) probably_damaging(1) TCGA-CV-7438-01 19 11470246 11470246 C G DKFZP761J1410 Intron 0.13 TCGA-CV-7438-01 19 14939109 14939109 G T OR7A5 Intron 0.21 TCGA-CV-7438-01 19 16974605 16974605 G A SIN3B Missense_Mutation p.E493K 0.21 deleterious(0) probably_damaging(0.982) TCGA-CV-7438-01 19 22157388 22157388 A G ZNF208 Missense_Mutation p.Y150H 0.20 tolerated(0.54) benign(0.096) TCGA-CV-7438-01 19 35791165 35791165 C T MAG Silent p.D276D 0.22 TCGA-CV-7438-01 19 39926554 39926554 G C RPS16 5'UTR 0.19 TCGA-CV-7438-01 19 40887043 40887043 G C HIPK4 Silent p.L285L 0.23 TCGA-CV-7438-01 19 41932174 41932174 C T B3GNT8 Silent p.T170T 0.21 TCGA-CV-7438-01 19 7747352 7747352 G A CTD-3214H19.16 Missense_Mutation p.A131T 0.26 unknown(0) TCGA-CV-7438-01 1 110709557 110709557 G A SLC6A17 Silent p.P2P 0.56 TCGA-CV-7438-01 1 148594513 148594513 G A NBPF15 Missense_Mutation p.R629K 0.04 tolerated(0.31) benign(0.248) TCGA-CV-7438-01 1 157557115 157557115 C G FCRL4 Silent p.V266V 0.33 TCGA-CV-7438-01 1 16475205 16475210 TTCAGC - EPHA2 In_Frame_Del p.K162_L163del 0.46 TCGA-CV-7438-01 1 175937634 175937635 - T RFWD2 Intron 0.08 TCGA-CV-7438-01 1 19478948 19478948 C T UBR4 Silent p.V2285V 0.05 TCGA-CV-7438-01 1 196871631 196871631 G T CFHR4 Missense_Mutation p.A47S 0.14 tolerated(0.3) possibly_damaging(0.688) TCGA-CV-7438-01 1 215955425 215955425 G T USH2A Missense_Mutation p.L3567M 0.28 probably_damaging(0.97) TCGA-CV-7438-01 1 28208651 28208651 C G THEMIS2 Silent p.R272R 0.26 TCGA-CV-7438-01 1 32498892 32498892 T - KHDRBS1 Frame_Shift_Del p.M244Wfs*12 0.24 TCGA-CV-7438-01 1 40775985 40775985 G A COL9A2 Missense_Mutation p.P230L 0.10 deleterious(0.01) possibly_damaging(0.908) TCGA-CV-7438-01 1 78958948 78958948 C T PTGFR Missense_Mutation p.H174Y 0.08 tolerated(1) benign(0.006) TCGA-CV-7438-01 1 87031654 87031654 T C CLCA4 Missense_Mutation p.I302T 0.22 tolerated(0.56) benign(0.066) TCGA-CV-7438-01 20 10630209 10630209 C T JAG1 Missense_Mutation p.D437N 0.15 tolerated(0.46) benign(0.006) TCGA-CV-7438-01 20 17434530 17434530 C T PCSK2 Silent p.Y343Y 0.33 TCGA-CV-7438-01 20 23065975 23065975 G A CD93 Silent p.C285C 0.12 TCGA-CV-7438-01 20 25038537 25038537 C G ACSS1 Missense_Mutation p.E68Q 0.15 tolerated(0.27) benign(0.018) TCGA-CV-7438-01 20 39978495 39978495 C T LPIN3 Silent p.A240A 0.18 TCGA-CV-7438-01 20 44181876 44181876 C T WFDC8 Missense_Mutation p.R162H 0.17 tolerated(0.09) probably_damaging(0.997) TCGA-CV-7438-01 21 37758374 37758374 C G CHAF1B 5'UTR 0.07 TCGA-CV-7438-01 21 45213246 45213246 G T RRP1 Missense_Mutation p.W107C 0.07 deleterious(0) probably_damaging(1) TCGA-CV-7438-01 22 24480679 24480679 G C CABIN1 Missense_Mutation p.E1020Q 0.23 tolerated(0.26) benign(0.316) TCGA-CV-7438-01 2 152539240 152539240 C G NEB Missense_Mutation p.G960A 0.12 probably_damaging(0.985) TCGA-CV-7438-01 2 177036312 177036312 C T HOXD3 Silent p.S203S 0.22 TCGA-CV-7438-01 2 179449702 179449702 G A TTN Intron 0.22 TCGA-CV-7438-01 2 216274717 216274717 C T FN1 Missense_Mutation p.G688S 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7438-01 2 232326268 232326285 TCGTCATCCTCATCATCT - NCL In_Frame_Del p.E193_D198del 0.19 TCGA-CV-7438-01 2 37028521 37028521 C T VIT Missense_Mutation p.T379I 0.07 tolerated(0.15) benign(0.061) TCGA-CV-7438-01 2 85779683 85779684 GT A GGCX Frame_Shift_Del p.T432Yfs*13 0.22 TCGA-CV-7438-01 2 99013475 99013475 G A CNGA3 Silent p.E614E 0.30 TCGA-CV-7438-01 2 99013493 99013493 C T CNGA3 Silent p.G620G 0.14 TCGA-CV-7438-01 3 100963246 100963246 C T IMPG2 Silent p.E643E 0.23 TCGA-CV-7438-01 3 127379692 127379692 G A PODXL2 Missense_Mutation p.G274E 0.13 tolerated(0.22) benign(0.079) TCGA-CV-7438-01 3 129180117 129180117 C T IFT122 Nonsense_Mutation p.Q158* 0.21 TCGA-CV-7438-01 3 178937422 178937422 T C PIK3CA Missense_Mutation p.C604R 0.25 deleterious(0) possibly_damaging(0.73) TCGA-CV-7438-01 3 183882981 183882981 C T DVL3 Missense_Mutation p.S227F 0.28 deleterious(0.01) benign(0.001) TCGA-CV-7438-01 3 44952543 44952543 C T TGM4 Missense_Mutation p.A567V 0.18 deleterious(0.03) benign(0.223) TCGA-CV-7438-01 3 47098467 47098467 A C SETD2 Missense_Mutation p.N2269K 0.26 tolerated(0.07) benign(0.046) TCGA-CV-7438-01 3 49362439 49362439 T G USP4 Missense_Mutation p.N174T 0.17 tolerated(0.26) benign(0.009) TCGA-CV-7438-01 3 52263196 52263196 C T TWF2 Missense_Mutation p.E302K 0.06 deleterious(0) possibly_damaging(0.624) TCGA-CV-7438-01 3 52941219 52941219 C G SFMBT1 Missense_Mutation p.E733Q 0.08 tolerated(0.45) possibly_damaging(0.651) TCGA-CV-7438-01 3 97202858 97202858 G C EPHA6 Missense_Mutation p.E719Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-7438-01 3 9757188 9757188 A T CPNE9 Missense_Mutation p.K267M 0.39 deleterious(0) probably_damaging(0.999) TCGA-CV-7438-01 3 9757198 9757198 C T CPNE9 Silent p.V270V 0.40 TCGA-CV-7438-01 4 154749 154749 G C ZNF718 RNA 0.17 TCGA-CV-7438-01 5 140180884 140180884 C A PCDHA3 Silent p.S34S 0.25 TCGA-CV-7438-01 5 140605383 140605383 C A PCDHB14 Missense_Mutation p.P769Q 0.08 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-CV-7438-01 5 168112816 168112816 C T SLIT3 Missense_Mutation p.R1144H 0.15 deleterious(0.01) probably_damaging(0.956) TCGA-CV-7438-01 5 24488189 24488189 G C CDH10 Missense_Mutation p.I650M 0.10 tolerated(0.2) probably_damaging(0.98) TCGA-CV-7438-01 5 75427937 75427937 G A SV2C Missense_Mutation p.R121Q 0.12 tolerated(0.43) benign(0.001) TCGA-CV-7438-01 6 107854757 107854757 C T SOBP Silent p.S172S 0.19 TCGA-CV-7438-01 6 107854759 107854759 T G SOBP Missense_Mutation p.F173C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-7438-01 6 112441515 112441515 C T LAMA4 Missense_Mutation p.E1546K 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7438-01 6 160453983 160453983 A G IGF2R Missense_Mutation p.Y352C 0.19 deleterious(0.03) probably_damaging(0.972) TCGA-CV-7438-01 6 167728857 167728857 G A UNC93A Missense_Mutation p.V431M 0.07 tolerated(0.41) benign(0.002) TCGA-CV-7438-01 6 170594698 170594698 C T DLL1 Missense_Mutation p.C274Y 0.33 deleterious(0) probably_damaging(1) TCGA-CV-7438-01 6 26377351 26377351 C T BTN3A2 3'UTR 0.36 TCGA-CV-7438-01 6 33169860 33169860 C G SLC39A7 Missense_Mutation p.H198D 0.16 tolerated(0.05) benign(0.179) TCGA-CV-7438-01 7 100320671 100320671 G A EPO Missense_Mutation p.R166H 0.17 tolerated(0.14) benign(0.007) TCGA-CV-7438-01 7 103132413 103132413 T C RELN Missense_Mutation p.T3144A 0.26 tolerated(0.11) benign(0.002) TCGA-CV-7438-01 7 135323426 135323426 G A NUP205 Missense_Mutation p.R1796Q 0.27 tolerated(0.06) possibly_damaging(0.865) TCGA-CV-7438-01 7 142919983 142919983 T C TAS2R40 Missense_Mutation p.F271S 0.27 deleterious(0.05) benign(0.088) TCGA-CV-7438-01 7 4116798 4116798 C T SDK1 Missense_Mutation p.T1060I 0.15 deleterious(0.03) benign(0.112) TCGA-CV-7438-01 8 103359220 103359220 T A UBR5 Missense_Mutation p.T163S 0.11 tolerated(0.63) possibly_damaging(0.824) TCGA-CV-7438-01 8 104922562 104922562 G A RIMS2 Intron 0.14 TCGA-CV-7438-01 8 17739505 17739505 G C FGL1 Intron 0.13 TCGA-CV-7438-01 8 62588517 62588517 C A ASPH Intron 0.15 TCGA-CV-7438-01 8 80954859 80954859 A T TPD52 Nonsense_Mutation p.L184* 0.24 TCGA-CV-7438-01 9 119093591 119093591 C T PAPPA Silent p.I1072I 0.27 TCGA-CV-7438-01 9 129981101 129981112 CCTGGTGGTGAA - RALGPS1 3'UTR 0.26 TCGA-CV-7438-01 9 5233770 5233770 A C INSL4 Missense_Mutation p.K105Q 0.05 tolerated(0.29) benign(0.156) TCGA-CV-7438-01 9 90497790 90497790 T C SPATA31E1 5'UTR 0.26 TCGA-CV-7438-01 X 107417817 107417817 T C COL4A6 Silent p.P998P 0.28 TCGA-CV-7438-01 X 134483215 134483215 G T ZNF449 Nonsense_Mutation p.E179* 0.09 TCGA-CV-7438-01 X 135106627 135106627 C T SLC9A6 Missense_Mutation p.S534L 0.14 deleterious(0.03) possibly_damaging(0.543) TCGA-CV-7438-01 X 152710829 152710829 G A TREX2 Silent p.L20L 0.42 TCGA-CV-7438-01 X 153740200 153740200 T A FAM3A Silent p.P44P 0.24 TCGA-CV-7438-01 X 32380945 32380945 T C DMD Missense_Mutation p.H1762R 0.22 benign(0.402) TCGA-CV-7438-01 X 57935933 57935933 C T ZXDA Missense_Mutation p.G308S 0.22 tolerated(0.05) possibly_damaging(0.873) TCGA-CV-7440-01 10 101591889 101591889 G A ABCC2 Splice_Site p.X1086_splice 0.13 TCGA-CV-7440-01 10 103789339 103789339 C A C10orf76 Intron 0.16 TCGA-CV-7440-01 10 118029071 118029071 T A GFRA1 Missense_Mutation p.Y121F 0.12 deleterious(0.01) possibly_damaging(0.882) TCGA-CV-7440-01 10 129183096 129183096 G C DOCK1 Missense_Mutation p.G1263R 0.14 tolerated(0.39) probably_damaging(0.98) TCGA-CV-7440-01 10 15646284 15646284 C - ITGA8 Frame_Shift_Del p.E681Kfs*10 0.22 TCGA-CV-7440-01 10 34690830 34690830 C T PARD3 Missense_Mutation p.E244K 0.32 tolerated(0.11) benign(0.297) TCGA-CV-7440-01 10 37419231 37419231 T G ANKRD30A Nonsense_Mutation p.Y89* 0.33 TCGA-CV-7440-01 10 37508037 37508037 T - ANKRD30A Frame_Shift_Del p.F1077Lfs*7 0.18 TCGA-CV-7440-01 10 46322017 46322017 C T AGAP4 Silent p.S446S 0.51 TCGA-CV-7440-01 10 50820232 50820232 C T SLC18A3 Silent p.R482R 0.49 TCGA-CV-7440-01 10 54530519 54530543 GGGCCCTGTAAGCCTCTGAGCCCTT - MBL2 Frame_Shift_Del p.Q64Pfs*69 0.19 TCGA-CV-7440-01 10 5789010 5789010 C G FAM208B Nonsense_Mutation p.S1209* 0.22 TCGA-CV-7440-01 10 5790610 5790610 G A FAM208B Silent p.K1742K 0.25 TCGA-CV-7440-01 10 82187100 82187100 G - FAM213A Frame_Shift_Del p.G142Vfs*7 0.19 TCGA-CV-7440-01 10 87614326 87614326 C A GRID1 Missense_Mutation p.S387I 0.10 deleterious(0) possibly_damaging(0.664) TCGA-CV-7440-01 11 102825316 102825316 C G MMP13 Missense_Mutation p.D128H 0.14 deleterious(0.03) possibly_damaging(0.893) TCGA-CV-7440-01 11 111796827 111796827 G T C11orf52 Silent p.V92V 0.10 TCGA-CV-7440-01 11 113105876 113105876 G A NCAM1 Silent p.T654T 0.22 TCGA-CV-7440-01 11 120984288 120984288 C T TECTA Silent p.T217T 0.15 TCGA-CV-7440-01 11 20673889 20673889 C T SLC6A5 Missense_Mutation p.R709C 0.13 deleterious(0.05) possibly_damaging(0.601) TCGA-CV-7440-01 11 31327197 31327197 C A DCDC1 Missense_Mutation p.G240V 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-7440-01 11 45672484 45672484 C T CHST1 5'UTR 0.07 TCGA-CV-7440-01 11 55065526 55065526 C A TRIM51HP RNA 0.42 TCGA-CV-7440-01 11 5537198 5537198 T A UBQLNL Missense_Mutation p.K158N 0.36 tolerated(0.13) benign(0.028) TCGA-CV-7440-01 11 55681277 55681277 C T OR5W2 Missense_Mutation p.R261Q 0.07 tolerated(0.09) benign(0.23) TCGA-CV-7440-01 11 5776293 5776293 C G OR52N4 Missense_Mutation p.T108S 0.19 tolerated(0.47) benign(0.014) TCGA-CV-7440-01 11 5799295 5799295 G A OR52N5 Silent p.H190H 0.06 TCGA-CV-7440-01 11 58170004 58170004 C G OR5B3 Missense_Mutation p.K293N 0.10 deleterious_low_confidence(0.02) benign(0.12) TCGA-CV-7440-01 11 60699222 60699222 G T TMEM132A Missense_Mutation p.G361C 0.17 deleterious(0.03) probably_damaging(0.985) TCGA-CV-7440-01 11 62289123 62289123 T C AHNAK Missense_Mutation p.K4256E 0.15 probably_damaging(0.992) TCGA-CV-7440-01 11 68675796 68675796 G A IGHMBP2 Missense_Mutation p.R147Q 0.43 deleterious(0) probably_damaging(0.991) TCGA-CV-7440-01 11 73620473 73620473 G A PAAF1 Missense_Mutation p.G188R 0.12 deleterious(0) probably_damaging(1) TCGA-CV-7440-01 11 8737365 8737365 G C ST5 Missense_Mutation p.L544V 0.30 tolerated(0.06) benign(0.015) TCGA-CV-7440-01 11 9459832 9459832 G A IPO7 Missense_Mutation p.E899K 0.49 tolerated(0.05) benign(0.382) TCGA-CV-7440-01 12 100441774 100441774 C A UHRF1BP1L Missense_Mutation p.A1307S 0.38 tolerated(0.27) benign(0.14) TCGA-CV-7440-01 12 104373699 104373699 G T TDG Missense_Mutation p.G86V 0.15 tolerated(0.08) benign(0.075) TCGA-CV-7440-01 12 111078896 111078896 G T TCTN1 Missense_Mutation p.G349V 0.31 deleterious(0) probably_damaging(1) TCGA-CV-7440-01 12 117013751 117013751 C T MAP1LC3B2 Missense_Mutation p.P2S 0.52 tolerated(0.06) benign(0.003) TCGA-CV-7440-01 12 117290331 117290331 A C RNFT2 3'Flank 0.21 TCGA-CV-7440-01 12 117290332 117290332 G A RNFT2 3'Flank 0.21 TCGA-CV-7440-01 12 26818845 26818845 G A ITPR2 Nonsense_Mutation p.Q517* 0.28 TCGA-CV-7440-01 12 40076610 40076610 A C C12orf40 Missense_Mutation p.N295T 0.28 deleterious(0.03) possibly_damaging(0.888) TCGA-CV-7440-01 12 53676136 53676136 A T ESPL1 Missense_Mutation p.Q903L 0.32 deleterious(0.02) benign(0.298) TCGA-CV-7440-01 12 55615024 55615024 T C OR10A7 Silent p.C72C 0.22 TCGA-CV-7440-01 12 56490314 56490319 AAGGCT - ERBB3 In_Frame_Del p.K695_A696del 0.29 TCGA-CV-7440-01 12 70954538 70954538 C T PTPRB Missense_Mutation p.G1449S 0.24 tolerated(0.1) benign(0.043) TCGA-CV-7440-01 12 81331469 81331469 C A LIN7A Silent p.T11T 0.26 TCGA-CV-7440-01 12 93221688 93221688 C A EEA1 Missense_Mutation p.Q468H 0.24 tolerated(0.1) possibly_damaging(0.695) TCGA-CV-7440-01 13 108518775 108518775 C A FAM155A Missense_Mutation p.W57L 0.49 deleterious(0) probably_damaging(0.994) TCGA-CV-7440-01 13 110833680 110833680 A G COL4A1 Missense_Mutation p.F718L 0.12 benign(0.036) TCGA-CV-7440-01 13 28498541 28498541 G C PDX1 Missense_Mutation p.L185F 0.06 deleterious(0) probably_damaging(1) TCGA-CV-7440-01 13 39952615 39952615 C T LHFP Missense_Mutation p.S145N 0.19 tolerated(0.62) probably_damaging(0.988) TCGA-CV-7440-01 13 76445202 76445202 G T C13orf45 5'UTR 0.72 TCGA-CV-7440-01 13 98116704 98116704 A G RAP2A 3'UTR 0.12 TCGA-CV-7440-01 14 20296501 20296501 G T OR4N2 Missense_Mutation p.M298I 0.33 tolerated(0.16) benign(0.011) TCGA-CV-7440-01 14 24788954 24788954 A - ADCY4 Frame_Shift_Del p.F909Lfs*29 0.30 TCGA-CV-7440-01 14 42361015 42361015 A G LRFN5 Missense_Mutation p.K650E 0.30 tolerated_low_confidence(0.27) benign(0.038) TCGA-CV-7440-01 14 51713848 51713858 GGACTAAGAAG - TMX1 Frame_Shift_Del p.T119Lfs*7 0.12 TCGA-CV-7440-01 14 59112625 59112625 C A DACT1 Silent p.A428A 0.12 TCGA-CV-7440-01 14 75936093 75936093 G A JDP2 Missense_Mutation p.R147H 0.28 tolerated(0.06) benign(0.007) TCGA-CV-7440-01 14 94088414 94088414 C G UNC79 Nonsense_Mutation p.S1435* 0.25 TCGA-CV-7440-01 14 95922000 95922000 G T SYNE3 Missense_Mutation p.A284E 0.10 tolerated(1) benign(0.001) TCGA-CV-7440-01 14 96130030 96130030 C A TCL6 RNA 0.36 TCGA-CV-7440-01 15 25221556 25221556 C T SNRPN Missense_Mutation p.P87L 0.19 deleterious(0.01) possibly_damaging(0.566) TCGA-CV-7440-01 15 54003099 54003099 G T WDR72 Silent p.T303T 0.15 TCGA-CV-7440-01 15 65490300 65490300 A G CILP Missense_Mutation p.I775T 0.37 deleterious(0) benign(0.031) TCGA-CV-7440-01 15 65959832 65959832 T C DENND4A Silent p.L1731L 0.17 TCGA-CV-7440-01 15 84581990 84581990 C A ADAMTSL3 Missense_Mutation p.T616N 0.21 deleterious(0.02) possibly_damaging(0.903) TCGA-CV-7440-01 15 89398229 89398229 C A ACAN Missense_Mutation p.P805T 0.44 tolerated(0.2) possibly_damaging(0.641) TCGA-CV-7440-01 15 91083350 91083350 G A CRTC3 Missense_Mutation p.S71N 0.43 tolerated(1) benign(0.003) TCGA-CV-7440-01 16 1400139 1400139 C A TSR3 Missense_Mutation p.C208F 0.49 deleterious(0) probably_damaging(0.992) TCGA-CV-7440-01 16 28331653 28331653 C T SBK1 Missense_Mutation p.A229V 0.27 tolerated(0.51) benign(0.067) TCGA-CV-7440-01 16 3602217 3602217 T C NLRC3 Missense_Mutation p.N823S 0.42 deleterious(0) probably_damaging(0.954) TCGA-CV-7440-01 16 56659643 56659643 C A MT1E 5'UTR 0.31 TCGA-CV-7440-01 16 701826 701826 G T WDR90 Splice_Site p.X281_splice 0.30 TCGA-CV-7440-01 17 10362566 10362566 A T MYH4 Splice_Site p.X529_splice 0.21 TCGA-CV-7440-01 17 12661501 12661501 C T MYOCD Missense_Mutation p.P768S 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-7440-01 17 33521053 33521053 C A SLC35G3 Missense_Mutation p.D92Y 0.41 deleterious(0.01) possibly_damaging(0.881) TCGA-CV-7440-01 17 34852240 34852241 TT - MYO19 Frame_Shift_Del p.K923Vfs*12 0.15 TCGA-CV-7440-01 17 39538432 39538432 G T KRT34 Missense_Mutation p.P65T 0.21 tolerated(0.1) possibly_damaging(0.721) TCGA-CV-7440-01 17 41570954 41570954 G A DHX8 Missense_Mutation p.M335I 0.17 deleterious(0.03) possibly_damaging(0.498) TCGA-CV-7440-01 17 51900732 51900732 C T KIF2B Missense_Mutation p.T113M 0.17 tolerated(0.15) benign(0.052) TCGA-CV-7440-01 17 59763502 59763502 T A BRIP1 Missense_Mutation p.Q867L 0.11 tolerated(0.26) benign(0.03) TCGA-CV-7440-01 17 64062993 64062993 A G CEP112 Silent p.I286I 0.32 TCGA-CV-7440-01 17 64881204 64881204 C T CACNG5 Silent p.S225S 0.25 TCGA-CV-7440-01 17 79478246 79478246 C T ACTG1 Missense_Mutation p.C257Y 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CV-7440-01 17 79865452 79865452 T C PCYT2 Missense_Mutation p.E172G 0.23 tolerated(0.06) benign(0.026) TCGA-CV-7440-01 18 2703849 2703852 GAAT - SMCHD1 Frame_Shift_Del p.E603Gfs*25 0.14 TCGA-CV-7440-01 18 29867752 29867752 G A GAREM Missense_Mutation p.R270C 0.18 tolerated(0.12) benign(0.095) TCGA-CV-7440-01 18 3116435 3116435 C T MYOM1 Missense_Mutation p.G1066E 0.46 deleterious(0.02) probably_damaging(1) TCGA-CV-7440-01 18 31323155 31323155 C G ASXL3 Missense_Mutation p.Q1115E 0.11 probably_damaging(0.986) TCGA-CV-7440-01 18 44559422 44559422 C T TCEB3B Silent p.L738L 0.13 TCGA-CV-7440-01 18 48473566 48473566 T A ME2 3'UTR 0.25 TCGA-CV-7440-01 18 5956275 5956275 G A L3MBTL4 Missense_Mutation p.H606Y 0.20 tolerated(0.06) benign(0) TCGA-CV-7440-01 18 64202289 64202289 T C CDH19 Missense_Mutation p.T424A 0.11 tolerated(0.06) benign(0.032) TCGA-CV-7440-01 19 15760804 15760804 A T CYP4F3 Silent p.I243I 0.24 TCGA-CV-7440-01 19 16000439 16000439 C G CYP4F2 Missense_Mutation p.E238Q 0.09 tolerated(1) benign(0.001) TCGA-CV-7440-01 19 19905448 19905448 C G ZNF506 Missense_Mutation p.K416N 0.48 deleterious(0.02) possibly_damaging(0.776) TCGA-CV-7440-01 19 2408379 2408379 G A TMPRSS9 Missense_Mutation p.A256T 0.45 deleterious(0.02) benign(0.331) TCGA-CV-7440-01 19 33467673 33467673 G T C19orf40 3'UTR 0.33 TCGA-CV-7440-01 19 36340485 36340485 G T NPHS1 Missense_Mutation p.P227T 0.33 deleterious(0) probably_damaging(0.992) TCGA-CV-7440-01 19 4499579 4499579 A G HDGFRP2 Missense_Mutation p.E556G 0.73 deleterious(0.05) unknown(0) TCGA-CV-7440-01 19 46815462 46815462 G C HIF3A Missense_Mutation p.C272S 0.36 tolerated(0.11) possibly_damaging(0.78) TCGA-CV-7440-01 19 52537631 52537631 C A ZNF432 Missense_Mutation p.C434F 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-7440-01 19 53612056 53612056 G A ZNF415 Silent p.C414C 0.37 TCGA-CV-7440-01 19 54313980 54313980 G T NLRP12 Nonsense_Mutation p.C311* 0.23 TCGA-CV-7440-01 19 54695621 54695621 G A TSEN34 Missense_Mutation p.S98N 0.27 tolerated(0.47) benign(0.005) TCGA-CV-7440-01 19 54761048 54761048 G A LILRB5 Silent p.L3L 0.15 TCGA-CV-7440-01 19 57035697 57035697 G T ZNF471 Missense_Mutation p.W87C 0.22 tolerated(0.13) benign(0.253) TCGA-CV-7440-01 19 58152339 58152340 CT - ZNF211 Frame_Shift_Del p.P227Lfs*52 0.26 TCGA-CV-7440-01 19 58579086 58579086 T A ZNF135 Missense_Mutation p.C436S 0.39 deleterious(0) probably_damaging(1) TCGA-CV-7440-01 1 103405901 103405901 A T COL11A1 Silent p.P1122P 0.39 TCGA-CV-7440-01 1 115216688 115216688 A - AMPD1 Frame_Shift_Del p.Y639Tfs*5 0.12 TCGA-CV-7440-01 1 11918291 11918291 G A NPPB Missense_Mutation p.S123F 0.40 tolerated(0.75) benign(0.034) TCGA-CV-7440-01 1 147380527 147380527 A T GJA8 Missense_Mutation p.R149W 0.14 deleterious(0) possibly_damaging(0.832) TCGA-CV-7440-01 1 158059256 158059256 C G KIRREL Intron 0.19 TCGA-CV-7440-01 1 16360203 16360203 G A CLCNKA 3'UTR 0.15 TCGA-CV-7440-01 1 16383461 16383461 G A CLCNKB 3'UTR 0.65 TCGA-CV-7440-01 1 16477390 16477390 C G EPHA2 Splice_Site p.X51_splice 0.34 TCGA-CV-7440-01 1 171310604 171310604 G T FMO4 Missense_Mutation p.D435Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-CV-7440-01 1 183876207 183876207 C T RGL1 Missense_Mutation p.R547W 0.47 tolerated(0.23) probably_damaging(0.969) TCGA-CV-7440-01 1 196643062 196643062 G T CFH Missense_Mutation p.G107V 0.14 deleterious(0) probably_damaging(1) TCGA-CV-7440-01 1 197091420 197091420 C G ASPM Missense_Mutation p.E1204Q 0.28 tolerated(0.44) possibly_damaging(0.564) TCGA-CV-7440-01 1 204425081 204425081 G A PIK3C2B Missense_Mutation p.R616C 0.37 tolerated(0.22) benign(0.001) TCGA-CV-7440-01 1 205417492 205417507 CATAGGAATGAAAAGC - MIR135B RNA 0.15 TCGA-CV-7440-01 1 215752341 215752341 A G KCTD3 Splice_Site p.X133_splice 0.12 TCGA-CV-7440-01 1 231556851 231556851 T G EGLN1 Missense_Mutation p.K262Q 0.46 deleterious(0.04) benign(0.008) TCGA-CV-7440-01 1 234367481 234367481 G A SLC35F3 Missense_Mutation p.R201Q 0.14 tolerated(0.54) benign(0.027) TCGA-CV-7440-01 1 235324636 235324636 G C RBM34 5'UTR 0.34 TCGA-CV-7440-01 1 248028155 248028155 T A TRIM58 Missense_Mutation p.L222Q 0.24 deleterious(0) probably_damaging(0.954) TCGA-CV-7440-01 1 248059405 248059405 G A OR2W3 Missense_Mutation p.E173K 0.32 tolerated(0.56) benign(0.002) TCGA-CV-7440-01 1 2540804 2540804 G A MMEL1 Missense_Mutation p.T170M 0.58 tolerated(0.46) benign(0.027) TCGA-CV-7440-01 1 26370885 26370885 G T SLC30A2 Missense_Mutation p.L108I 0.21 deleterious(0) probably_damaging(0.998) TCGA-CV-7440-01 1 27100151 27100151 C A ARID1A Nonsense_Mutation p.S1316* 0.49 TCGA-CV-7440-01 1 40705888 40705888 G C RLF Missense_Mutation p.E1838D 0.14 tolerated(0.43) benign(0.001) TCGA-CV-7440-01 1 41101587 41101587 C A RIMS3 Splice_Site p.X120_splice 0.20 TCGA-CV-7440-01 1 45444037 45444037 C T EIF2B3 Missense_Mutation p.A82T 0.37 tolerated(0.43) benign(0.002) TCGA-CV-7440-01 1 67292591 67292591 A C WDR78 Missense_Mutation p.Y751D 0.18 deleterious(0.02) benign(0.246) TCGA-CV-7440-01 1 7724486 7724486 G T CAMTA1 Missense_Mutation p.V627F 0.47 deleterious_low_confidence(0.04) benign(0.056) TCGA-CV-7440-01 1 77627356 77627356 C A PIGK Missense_Mutation p.A209S 0.36 tolerated(0.57) benign(0.377) TCGA-CV-7440-01 20 39832794 39832794 C A ZHX3 Missense_Mutation p.G255W 0.24 deleterious(0) probably_damaging(0.995) TCGA-CV-7440-01 20 42168941 42168941 T A L3MBTL1 Missense_Mutation p.I753N 0.42 deleterious(0) possibly_damaging(0.875) TCGA-CV-7440-01 20 489118 489118 G T CSNK2A1 Nonsense_Mutation p.Y26* 0.49 TCGA-CV-7440-01 20 57896161 57896161 C T EDN3 Missense_Mutation p.S152L 0.30 tolerated(0.27) benign(0.082) TCGA-CV-7440-01 20 60908211 60908211 G A LAMA5 Missense_Mutation p.R1073W 0.53 benign(0.425) TCGA-CV-7440-01 21 47424033 47424033 G T COL6A1 3'UTR 0.32 TCGA-CV-7440-01 22 17264985 17264985 C A XKR3 Missense_Mutation p.G302C 0.59 deleterious(0) probably_damaging(0.995) TCGA-CV-7440-01 22 26894935 26894935 T A TFIP11 Missense_Mutation p.T446S 0.62 tolerated(0.76) benign(0.003) TCGA-CV-7440-01 22 29095857 29095867 AGCTTGCAGGT - CHEK2 Frame_Shift_Del p.T366Lfs*14 0.45 TCGA-CV-7440-01 22 40757500 40757500 G T ADSL Missense_Mutation p.A291S 0.15 deleterious(0) probably_damaging(0.944) TCGA-CV-7440-01 22 40757501 40757501 C G ADSL Missense_Mutation p.A291G 0.16 deleterious(0) probably_damaging(0.969) TCGA-CV-7440-01 22 40800432 40800432 C T SGSM3 Silent p.A113A 0.63 TCGA-CV-7440-01 22 46806456 46806456 G A CELSR1 Missense_Mutation p.S1591F 0.56 tolerated(0.11) probably_damaging(1) TCGA-CV-7440-01 2 124783157 124783157 A T CNTNAP5 5'UTR 0.61 TCGA-CV-7440-01 2 141027836 141027836 G C LRP1B Missense_Mutation p.P4408A 0.33 possibly_damaging(0.539) TCGA-CV-7440-01 2 141128763 141128763 A G LRP1B Silent p.A3620A 0.12 TCGA-CV-7440-01 2 141571366 141571366 A G LRP1B Missense_Mutation p.I1740T 0.11 benign(0.152) TCGA-CV-7440-01 2 149226943 149226943 A T MBD5 Silent p.V477V 0.18 TCGA-CV-7440-01 2 163134806 163134806 C A IFIH1 Missense_Mutation p.M558I 0.11 deleterious(0) probably_damaging(0.99) TCGA-CV-7440-01 2 189962019 189962019 C T COL5A2 Missense_Mutation p.G147E 0.13 probably_damaging(0.999) TCGA-CV-7440-01 2 196834805 196834805 C T DNAH7 Missense_Mutation p.R691Q 0.26 tolerated(0.34) benign(0.009) TCGA-CV-7440-01 2 198950188 198950188 C G PLCL1 Missense_Mutation p.I649M 0.09 tolerated(0.11) possibly_damaging(0.862) TCGA-CV-7440-01 2 215880315 215880315 T A ABCA12 Nonsense_Mutation p.K619* 0.21 TCGA-CV-7440-01 2 233243704 233243716 TGGAACCGCGAGG - ALPP Frame_Shift_Del p.W34Qfs*34 0.16 TCGA-CV-7440-01 2 241066107 241066107 C A MYEOV2 Missense_Mutation p.S211I 0.41 deleterious_low_confidence(0) unknown(0) TCGA-CV-7440-01 2 31133837 31133837 C G GALNT14 Missense_Mutation p.G535A 0.20 tolerated(0.27) benign(0.037) TCGA-CV-7440-01 2 55831140 55831140 C T SMEK2 Missense_Mutation p.D91N 0.20 deleterious(0.02) benign(0.226) TCGA-CV-7440-01 2 79350377 79350377 G A REG1A 3'UTR 0.32 TCGA-CV-7440-01 2 85824002 85824006 TGCCT - RNF181 Frame_Shift_Del p.C94Sfs*24 0.12 TCGA-CV-7440-01 2 8919048 8919048 G T KIDINS220 Missense_Mutation p.D864E 0.13 tolerated(0.52) benign(0.084) TCGA-CV-7440-01 2 90122049 90122049 T A IGKV1D-17 Silent p.S89S 0.38 TCGA-CV-7440-01 2 96457948 96457948 C T AC008268.2 RNA 0.20 TCGA-CV-7440-01 2 97370099 97370099 G A LMAN2L 3'Flank 0.32 TCGA-CV-7440-01 3 10401651 10401651 G A ATP2B2 Missense_Mutation p.R606C 0.55 deleterious(0) probably_damaging(0.956) TCGA-CV-7440-01 3 108100408 108100408 T G MYH15 Splice_Site p.X1943_splice 0.36 TCGA-CV-7440-01 3 113634611 113634611 C T GRAMD1C Missense_Mutation p.A339V 0.19 tolerated(0.43) benign(0.056) TCGA-CV-7440-01 3 113866346 113866346 G A DRD3 Missense_Mutation p.R148W 0.05 deleterious(0) probably_damaging(0.93) TCGA-CV-7440-01 3 135969356 135969356 C T PCCB Silent p.L47L 0.37 TCGA-CV-7440-01 3 140409849 140409849 G A TRIM42 Missense_Mutation p.E634K 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7440-01 3 1444056 1444056 A G CNTN6 Missense_Mutation p.T958A 0.46 deleterious(0.02) probably_damaging(0.979) TCGA-CV-7440-01 3 170185021 170185021 T C SLC7A14 Missense_Mutation p.E713G 0.33 tolerated(0.2) benign(0.015) TCGA-CV-7440-01 3 42727527 42727527 C T KLHL40 Silent p.L139L 0.51 TCGA-CV-7440-01 4 108831579 108831579 A T SGMS2 Missense_Mutation p.K323I 0.48 deleterious(0.02) possibly_damaging(0.77) TCGA-CV-7440-01 4 115998155 115998155 G T NDST4 Missense_Mutation p.T13K 0.15 tolerated_low_confidence(0.24) benign(0.016) TCGA-CV-7440-01 4 134073285 134073285 G T PCDH10 Missense_Mutation p.G664W 0.12 deleterious(0) probably_damaging(1) TCGA-CV-7440-01 4 151504953 151504953 C A MAB21L2 Silent p.R258R 0.56 TCGA-CV-7440-01 4 15556795 15556795 A G CC2D2A Missense_Mutation p.N863D 0.26 deleterious(0) probably_damaging(0.97) TCGA-CV-7440-01 4 158060002 158060002 G T GLRB Nonsense_Mutation p.G218* 0.13 TCGA-CV-7440-01 4 166232680 166232680 T C KLHL2 Silent p.N438N 0.15 TCGA-CV-7440-01 4 26322581 26322581 G A RBPJ Intron 0.42 TCGA-CV-7440-01 4 62758534 62758534 C G LPHN3 Missense_Mutation p.D479E 0.16 tolerated(0.81) benign(0) TCGA-CV-7440-01 4 83748592 83748592 C G SEC31A Missense_Mutation p.G1074A 0.17 tolerated(0.65) benign(0.002) TCGA-CV-7440-01 4 90856493 90856493 G T MMRN1 Missense_Mutation p.K554N 0.15 deleterious(0.04) benign(0.004) TCGA-CV-7440-01 5 137476488 137476488 A G BRD8 Missense_Mutation p.L1174P 0.19 deleterious(0) probably_damaging(0.959) TCGA-CV-7440-01 5 140048308 140048308 G T WDR55 Missense_Mutation p.M164I 0.18 tolerated(0.14) benign(0.14) TCGA-CV-7440-01 5 140184653 140184653 C T PCDHA2 Intron 0.41 TCGA-CV-7440-01 5 140223207 140223207 G C PCDHA8 Silent p.T767T 0.25 TCGA-CV-7440-01 5 140588692 140588692 C A PCDHB12 Missense_Mutation p.N71K 0.34 tolerated_low_confidence(0.13) benign(0.016) TCGA-CV-7440-01 5 167855056 167855056 G T WWC1 Missense_Mutation p.G610V 0.31 tolerated(0.3) benign(0.108) TCGA-CV-7440-01 5 168135107 168135107 T G SLIT3 Splice_Site p.X907_splice 0.10 TCGA-CV-7440-01 5 169015579 169015579 G C SPDL1 Missense_Mutation p.E53D 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-7440-01 5 176005489 176005489 G A CDHR2 Silent p.L566L 0.14 TCGA-CV-7440-01 5 176637776 176637776 C A NSD1 Nonsense_Mutation p.C792* 0.21 TCGA-CV-7440-01 5 176684042 176684042 G C NSD1 Missense_Mutation p.C1619S 0.44 deleterious(0) probably_damaging(0.999) TCGA-CV-7440-01 5 176721512 176721512 C A NSD1 Silent p.P2381P 0.20 TCGA-CV-7440-01 5 63256581 63256581 C T HTR1A Silent p.E322E 0.11 TCGA-CV-7440-01 5 75954373 75954373 G T IQGAP2 Missense_Mutation p.V804F 0.45 deleterious(0.02) benign(0.027) TCGA-CV-7440-01 5 82357723 82357723 C T TMEM167A Missense_Mutation p.G41S 0.19 tolerated(0.13) possibly_damaging(0.789) TCGA-CV-7440-01 5 9136622 9136622 C A SEMA5A Silent p.A531A 0.12 TCGA-CV-7440-01 5 9190523 9190523 G C SEMA5A Missense_Mutation p.Q377E 0.41 deleterious(0.03) probably_damaging(0.996) TCGA-CV-7440-01 6 105474345 105474346 - A LIN28B Frame_Shift_Ins p.D127Rfs*2 0.17 TCGA-CV-7440-01 6 118556735 118556735 T C SLC35F1 Missense_Mutation p.I138T 0.32 tolerated(0.25) benign(0.2) TCGA-CV-7440-01 6 119341265 119341265 C A FAM184A Nonsense_Mutation p.E404* 0.26 TCGA-CV-7440-01 6 129674405 129674405 C G LAMA2 Missense_Mutation p.D1540E 0.33 deleterious(0) probably_damaging(0.957) TCGA-CV-7440-01 6 129714275 129714275 G T LAMA2 Nonsense_Mutation p.E1774* 0.25 TCGA-CV-7440-01 6 132039838 132039838 G A ENPP3 Missense_Mutation p.G480E 0.26 deleterious(0.02) probably_damaging(0.955) TCGA-CV-7440-01 6 152665276 152665276 G T SYNE1 Silent p.V4055V 0.52 TCGA-CV-7440-01 6 41318574 41318574 G C NCR2 Missense_Mutation p.S268T 0.32 tolerated_low_confidence(0.09) benign(0.153) TCGA-CV-7440-01 6 70778326 70778326 G T COL19A1 Silent p.G394G 0.30 TCGA-CV-7440-01 7 102604000 102604000 G T FBXL13 Missense_Mutation p.P235H 0.26 tolerated(0.59) benign(0.401) TCGA-CV-7440-01 7 111379256 111379256 G A DOCK4 Silent p.N1713N 0.16 TCGA-CV-7440-01 7 136700500 136700500 G C CHRM2 Missense_Mutation p.M296I 0.12 tolerated(0.21) benign(0.005) TCGA-CV-7440-01 7 138487681 138487681 G A TMEM213 Missense_Mutation p.R64H 0.33 tolerated(0.19) possibly_damaging(0.715) TCGA-CV-7440-01 7 143095840 143095841 - G EPHA1 Frame_Shift_Ins p.R397Pfs*14 0.23 TCGA-CV-7440-01 7 148851047 148851047 G T ZNF398 Missense_Mutation p.W12L 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-CV-7440-01 7 149545456 149545456 G A ZNF862 Missense_Mutation p.D292N 0.16 tolerated_low_confidence(0.21) benign(0.004) TCGA-CV-7440-01 7 4188976 4188976 C T SDK1 Silent p.G1502G 0.31 TCGA-CV-7440-01 7 48312325 48312325 T A ABCA13 Missense_Mutation p.L1021H 0.38 probably_damaging(0.999) TCGA-CV-7440-01 7 82582945 82582945 T A PCLO Nonsense_Mutation p.K2442* 0.20 TCGA-CV-7440-01 7 86479718 86479718 C T GRM3 Silent p.S808S 0.36 TCGA-CV-7440-01 7 98609784 98609784 G T TRRAP Missense_Mutation p.A3796S 0.41 benign(0.026) TCGA-CV-7440-01 7 99757693 99757693 C A GAL3ST4 Missense_Mutation p.R440L 0.16 deleterious(0.01) possibly_damaging(0.743) TCGA-CV-7440-01 8 101541965 101541965 C T ANKRD46 Missense_Mutation p.E33K 0.13 tolerated(0.17) possibly_damaging(0.621) TCGA-CV-7440-01 8 110587410 110587410 G C SYBU Missense_Mutation p.L573V 0.14 tolerated(0.23) benign(0.017) TCGA-CV-7440-01 8 113256689 113256689 C A CSMD3 Missense_Mutation p.G3446C 0.17 deleterious(0) probably_damaging(0.994) TCGA-CV-7440-01 8 11994697 11994697 C A USP17L2 Missense_Mutation p.A525S 0.22 tolerated(1) benign(0) TCGA-CV-7440-01 8 125061872 125061872 A G FER1L6 Missense_Mutation p.T917A 0.21 tolerated(0.52) probably_damaging(0.999) TCGA-CV-7440-01 8 142437153 142437153 G T PTP4A3 Missense_Mutation p.V105L 0.16 deleterious(0) possibly_damaging(0.874) TCGA-CV-7440-01 8 145140516 145140516 C A GPAA1 Missense_Mutation p.L498M 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-CV-7440-01 8 41572572 41572572 G A ANK1 Silent p.H574H 0.25 TCGA-CV-7440-01 8 88886180 88886180 C G DCAF4L2 Missense_Mutation p.R7P 0.27 deleterious(0.03) benign(0.33) TCGA-CV-7440-01 8 90798848 90798848 G A RIPK2 Missense_Mutation p.E353K 0.17 tolerated(0.97) benign(0) TCGA-CV-7440-01 8 95538791 95538791 C T KIAA1429 Missense_Mutation p.E561K 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7440-01 9 107547893 107547893 T C ABCA1 Silent p.V2143V 0.15 TCGA-CV-7440-01 9 113163273 113163273 T C SVEP1 Missense_Mutation p.E3228G 0.31 benign(0.232) TCGA-CV-7440-01 9 119097340 119097340 C A PAPPA Missense_Mutation p.P1200T 0.14 tolerated(0.18) possibly_damaging(0.641) TCGA-CV-7440-01 9 137704317 137704317 A G COL5A1 Missense_Mutation p.E1238G 0.14 unknown(0) TCGA-CV-7440-01 9 73150933 73150933 C A TRPM3 Missense_Mutation p.S1687I 0.36 deleterious_low_confidence(0) benign(0.299) TCGA-CV-7440-01 9 79117237 79117237 A T GCNT1 5'UTR 0.33 TCGA-CV-7440-01 9 84532025 84532025 T C SPATA31D5P RNA 0.15 TCGA-CV-7440-01 9 90502529 90502529 C T SPATA31E1 Missense_Mutation p.P1043S 0.13 tolerated(0.16) benign(0.396) TCGA-CV-7440-01 X 102471104 102471104 C A BEX4 Missense_Mutation p.A8E 0.49 deleterious(0.03) probably_damaging(0.918) TCGA-CV-7440-01 X 108904779 108904779 T C ACSL4 Missense_Mutation p.I601V 0.51 tolerated(0.08) probably_damaging(0.991) TCGA-CV-7440-01 X 110951259 110951259 C G ALG13 Missense_Mutation p.L130V 0.50 tolerated_low_confidence(0.16) benign(0.229) TCGA-CV-7440-01 X 111097062 111097062 T A TRPC5 Silent p.T391T 0.60 TCGA-CV-7440-01 X 12734432 12734432 T A FRMPD4 Nonsense_Mutation p.C618* 0.59 TCGA-CV-7440-01 X 142967322 142967322 T A UBE2NL Silent p.A40A 0.60 TCGA-CV-7440-01 X 152807330 152807330 C A ATP2B3 Missense_Mutation p.L204I 0.69 tolerated(1) benign(0.007) TCGA-CV-7440-01 X 53672318 53672318 C G HUWE1 Missense_Mutation p.R150P 0.53 probably_damaging(0.999) TCGA-CV-7440-01 X 65480093 65480093 T C HEPH Missense_Mutation p.F1117S 0.57 deleterious(0.02) benign(0.032) TCGA-CV-7440-01 X 76907828 76907828 C G ATRX Missense_Mutation p.E1445Q 0.51 benign(0.031) TCGA-CV-7446-01 10 101567179 101567179 C A ABCC2 Missense_Mutation p.D523E 0.10 tolerated(1) benign(0.004) TCGA-CV-7446-01 10 101567180 101567180 C A ABCC2 Missense_Mutation p.Q524K 0.10 tolerated(0.74) benign(0.084) TCGA-CV-7446-01 10 105831828 105831828 A G COL17A1 Missense_Mutation p.I142T 0.73 unknown(0) TCGA-CV-7446-01 10 116049006 116049006 G T VWA2 Missense_Mutation p.G627V 0.10 deleterious(0) probably_damaging(1) TCGA-CV-7446-01 10 118231356 118231356 G C PNLIPRP3 Silent p.G379G 0.10 TCGA-CV-7446-01 10 135123745 135123745 C T ZNF511 Silent p.H169H 0.73 TCGA-CV-7446-01 10 18134051 18134051 G T MRC1 Intron 0.74 TCGA-CV-7446-01 10 18276472 18276472 G - SLC39A12 Frame_Shift_Del p.V388Sfs*61 0.48 TCGA-CV-7446-01 10 32740519 32740519 G A CCDC7 Splice_Site 0.94 TCGA-CV-7446-01 10 75082775 75082775 T C TTC18 Silent p.R356R 0.66 TCGA-CV-7446-01 10 87407012 87407012 T G GRID1 Missense_Mutation p.K714Q 0.42 tolerated(0.05) benign(0.207) TCGA-CV-7446-01 11 103907963 103907963 A G DDI1 Missense_Mutation p.Q138R 0.25 tolerated(0.2) benign(0.004) TCGA-CV-7446-01 11 12247785 12247785 C T MICAL2 Nonsense_Mutation p.R586* 0.13 TCGA-CV-7446-01 11 27406875 27406875 G A LGR4 Missense_Mutation p.A181V 0.84 deleterious(0.01) probably_damaging(1) TCGA-CV-7446-01 11 28045366 28045366 C T KIF18A Missense_Mutation p.V846I 0.14 tolerated(0.49) benign(0.001) TCGA-CV-7446-01 11 51411528 51411528 C G OR4A5 Missense_Mutation p.E290Q 0.51 tolerated_low_confidence(0.08) probably_damaging(0.931) TCGA-CV-7446-01 11 51412203 51412203 A T OR4A5 Missense_Mutation p.S65T 0.33 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-CV-7446-01 11 75139524 75139524 G A KLHL35 Silent p.F343F 0.55 TCGA-CV-7446-01 12 102155466 102155466 A T GNPTAB Missense_Mutation p.F931I 0.45 deleterious(0) probably_damaging(0.999) TCGA-CV-7446-01 12 102158621 102158621 C G GNPTAB Missense_Mutation p.E692Q 0.37 tolerated(0.5) benign(0.01) TCGA-CV-7446-01 12 20522856 20522856 T A PDE3A Missense_Mutation p.L213H 0.24 deleterious(0.02) possibly_damaging(0.711) TCGA-CV-7446-01 12 31267773 31267773 C T RP11-551L14.1 Intron 0.59 TCGA-CV-7446-01 12 72050969 72050969 C T ZFC3H1 Silent p.L237L 0.41 TCGA-CV-7446-01 12 78513517 78513517 C A NAV3 Missense_Mutation p.P1181T 0.45 deleterious(0.04) benign(0.212) TCGA-CV-7446-01 13 103421818 103421818 T C TEX30 Missense_Mutation p.Y30C 0.67 tolerated(0.16) benign(0.003) TCGA-CV-7446-01 13 23777923 23777923 C T SGCG Silent p.G30G 0.32 TCGA-CV-7446-01 13 41533025 41533025 T C ELF1 Missense_Mutation p.D67G 0.28 tolerated(0.39) probably_damaging(0.961) TCGA-CV-7446-01 13 41639314 41639314 C T WBP4 Silent p.S51S 0.25 TCGA-CV-7446-01 13 49281015 49281015 G C CYSLTR2 Missense_Mutation p.G21A 0.37 tolerated(0.3) benign(0.004) TCGA-CV-7446-01 14 104561975 104561975 C T ASPG Silent p.V137V 0.38 TCGA-CV-7446-01 14 64908855 64908855 C G MTHFD1 Silent p.L656L 0.47 TCGA-CV-7446-01 14 93708889 93708889 G A BTBD7 Silent p.A1043A 0.26 TCGA-CV-7446-01 14 94526560 94526560 G A DDX24 Silent p.C599C 0.19 TCGA-CV-7446-01 15 42281668 42281668 G C PLA2G4E Missense_Mutation p.F556L 0.84 deleterious(0) probably_damaging(0.998) TCGA-CV-7446-01 15 45454041 45454041 T G DUOX1 Missense_Mutation p.F1321C 0.46 deleterious(0) probably_damaging(1) TCGA-CV-7446-01 15 56924166 56924166 T C ZNF280D Missense_Mutation p.I824V 0.80 tolerated(0.78) benign(0.002) TCGA-CV-7446-01 15 75122660 75122660 C A CPLX3 Missense_Mutation p.L148I 0.53 tolerated(0.76) probably_damaging(0.991) TCGA-CV-7446-01 16 1291556 1291556 G A TPSAB1 Missense_Mutation p.G119R 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7446-01 16 14989908 14989918 TTCACTTCCCT - NOMO1 3'UTR 0.11 TCGA-CV-7446-01 16 69373327 69373327 C T COG8 Silent p.R43R 0.73 TCGA-CV-7446-01 16 70415748 70415748 G C ST3GAL2 Missense_Mutation p.F299L 0.12 benign(0.046) TCGA-CV-7446-01 16 76501402 76501402 C G CNTNAP4 Nonsense_Mutation p.S473* 0.20 TCGA-CV-7446-01 16 89811462 89811462 C T FANCA Silent p.L1177L 0.49 TCGA-CV-7446-01 17 10253986 10253986 C A MYH13 Missense_Mutation p.S344I 0.75 deleterious(0.02) possibly_damaging(0.888) TCGA-CV-7446-01 17 39296608 39296608 G C KRTAP4-6 Missense_Mutation p.S44R 0.20 deleterious(0.03) unknown(0) TCGA-CV-7446-01 17 42854927 42854927 G T ADAM11 Missense_Mutation p.S620I 0.40 tolerated(0.15) benign(0.014) TCGA-CV-7446-01 17 60346337 60346337 G T TBC1D3P2 RNA 0.38 TCGA-CV-7446-01 17 61843401 61843401 G T CCDC47 Silent p.V45V 0.43 TCGA-CV-7446-01 17 67081264 67081264 G T ABCA6 Missense_Mutation p.N1363K 0.17 deleterious(0.04) possibly_damaging(0.853) TCGA-CV-7446-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.91 deleterious(0) probably_damaging(0.999) TCGA-CV-7446-01 19 10163264 10163264 G A C3P1 RNA 0.36 TCGA-CV-7446-01 19 17918790 17918802 GGCCCCGTGCCAT - B3GNT3 Frame_Shift_Del p.A59Pfs*50 0.26 TCGA-CV-7446-01 19 18258344 18258344 T A MAST3 Missense_Mutation p.S1102T 0.48 deleterious(0.01) probably_damaging(0.991) TCGA-CV-7446-01 19 19638864 19638864 G T NDUFA13 Missense_Mutation p.G122W 0.31 tolerated(0.05) probably_damaging(0.941) TCGA-CV-7446-01 19 20828521 20828521 C T ZNF626 Missense_Mutation p.M65I 0.17 tolerated(0.16) benign(0.023) TCGA-CV-7446-01 19 21712542 21712542 A G ZNF429 Missense_Mutation p.Y29C 0.48 deleterious(0) probably_damaging(0.995) TCGA-CV-7446-01 19 21991252 21991252 C A ZNF43 Missense_Mutation p.K529N 0.19 deleterious(0.04) probably_damaging(0.937) TCGA-CV-7446-01 19 2353005 2353005 A G LLfos-48D6.1 Intron 0.25 TCGA-CV-7446-01 19 2353008 2353008 C G LLfos-48D6.1 Intron 0.25 TCGA-CV-7446-01 19 23578241 23578241 C G ZNF91 5'UTR 0.41 TCGA-CV-7446-01 19 35434432 35434432 G A ZNF30 Missense_Mutation p.G189S 0.15 tolerated(1) benign(0.088) TCGA-CV-7446-01 19 35524463 35524463 G A SCN1B Missense_Mutation p.V90M 0.53 tolerated_low_confidence(0.07) possibly_damaging(0.875) TCGA-CV-7446-01 19 35551281 35551281 G A HPN Missense_Mutation p.R162H 0.05 deleterious(0) probably_damaging(0.987) TCGA-CV-7446-01 19 42853779 42853779 C G MEGF8 Silent p.L742L 0.18 TCGA-CV-7446-01 19 4433520 4433520 G A CHAF1A Missense_Mutation p.R886H 0.32 tolerated(0.26) probably_damaging(0.943) TCGA-CV-7446-01 19 44777132 44777132 C T ZNF233 Nonsense_Mutation p.Q107* 0.15 TCGA-CV-7446-01 19 48184019 48184019 C - GLTSCR1 Frame_Shift_Del p.H533Tfs*191 0.37 TCGA-CV-7446-01 19 54445552 54445552 C T CACNG7 3'UTR 0.49 TCGA-CV-7446-01 19 57865147 57865147 C T ZNF304 Missense_Mutation p.L30F 0.51 deleterious(0) probably_damaging(0.955) TCGA-CV-7446-01 19 9406610 9406610 G A ZNF699 Silent p.L490L 0.45 TCGA-CV-7446-01 1 144916643 144916643 C A PDE4DIP Missense_Mutation p.R571L 0.23 tolerated(0.12) benign(0.392) TCGA-CV-7446-01 1 155258185 155258185 C A HCN3 Silent p.A752A 0.15 TCGA-CV-7446-01 1 157014259 157014259 C G ARHGEF11 5'UTR 0.82 TCGA-CV-7446-01 1 159858170 159858170 G T CCDC19 Missense_Mutation p.A130D 0.23 tolerated(0.09) possibly_damaging(0.461) TCGA-CV-7446-01 1 159901696 159901696 C A IGSF9 Missense_Mutation p.R423L 0.18 tolerated(0.58) benign(0.047) TCGA-CV-7446-01 1 160251977 160251977 G A PEX19 Missense_Mutation p.S149L 0.14 deleterious(0) probably_damaging(0.967) TCGA-CV-7446-01 1 19549195 19549195 G T EMC1 Missense_Mutation p.S837Y 0.26 deleterious(0) probably_damaging(0.988) TCGA-CV-7446-01 1 202301067 202301067 C T UBE2T Missense_Mutation p.D164N 0.27 tolerated(0.26) benign(0.001) TCGA-CV-7446-01 1 223178942 223178942 G C DISP1 Silent p.S1401S 0.20 TCGA-CV-7446-01 1 223284381 223284381 C A TLR5 Missense_Mutation p.G665C 0.75 deleterious(0) probably_damaging(0.995) TCGA-CV-7446-01 1 40703673 40703673 C T RLF Missense_Mutation p.S1100L 0.31 tolerated(0.3) benign(0.094) TCGA-CV-7446-01 1 53742373 53742373 C T LRP8 Missense_Mutation p.A292T 0.64 tolerated(0.23) possibly_damaging(0.574) TCGA-CV-7446-01 1 63988829 63988829 G A ITGB3BP 5'UTR 0.72 TCGA-CV-7446-01 1 68659618 68659618 G A WLS Intron 0.81 TCGA-CV-7446-01 1 8421400 8421400 T G RERE Missense_Mutation p.S723R 0.59 possibly_damaging(0.637) TCGA-CV-7446-01 1 9640230 9640230 T A SLC25A33 Missense_Mutation p.F234Y 0.35 tolerated(0.11) possibly_damaging(0.519) TCGA-CV-7446-01 20 13260526 13260526 C G ISM1 Silent p.T208T 0.31 TCGA-CV-7446-01 20 19970896 19970896 A G RIN2 Missense_Mutation p.K719R 0.30 deleterious(0) probably_damaging(0.998) TCGA-CV-7446-01 20 60891826 60891826 C A LAMA5 Missense_Mutation p.V2553L 0.33 benign(0.272) TCGA-CV-7446-01 20 7866457 7866457 G A HAO1 Silent p.L290L 0.22 TCGA-CV-7446-01 21 30693736 30693736 C T BACH1 Silent p.F45F 0.36 TCGA-CV-7446-01 21 45732961 45732961 C T PFKL Silent p.I176I 0.33 TCGA-CV-7446-01 22 22712568 22712568 C A IGLV1-47 Missense_Mutation p.A104D 0.22 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-CV-7446-01 22 25294221 25294223 GAT - SGSM1 In_Frame_Del p.D824del 0.68 TCGA-CV-7446-01 22 40803492 40803494 CGG - SGSM3 In_Frame_Del p.R484del 0.37 TCGA-CV-7446-01 2 122202520 122202520 G A CLASP1 Intron 0.35 TCGA-CV-7446-01 2 125547598 125547598 C T CNTNAP5 Missense_Mutation p.P957S 0.21 tolerated(0.12) possibly_damaging(0.721) TCGA-CV-7446-01 2 158142636 158142636 G C GALNT5 Missense_Mutation p.Q577H 0.52 deleterious(0.02) probably_damaging(0.928) TCGA-CV-7446-01 2 165947745 165947745 C A SCN3A Missense_Mutation p.G1640W 0.20 deleterious(0) probably_damaging(0.997) TCGA-CV-7446-01 2 176964812 176964812 G T HOXD12 Nonsense_Mutation p.E95* 0.68 TCGA-CV-7446-01 2 179588229 179588229 C T TTN Missense_Mutation p.D7200N 0.63 TCGA-CV-7446-01 2 183050726 183050726 T A PDE1A Missense_Mutation p.Y486F 0.12 tolerated(0.69) benign(0.002) TCGA-CV-7446-01 2 27324711 27324711 C T CGREF1 Missense_Mutation p.G130R 0.48 tolerated(0.44) possibly_damaging(0.454) TCGA-CV-7446-01 2 32476214 32476214 C T NLRC4 Missense_Mutation p.R240Q 0.30 tolerated(0.3) benign(0.019) TCGA-CV-7446-01 2 58431263 58431263 A T FANCL Splice_Site p.X157_splice 0.51 TCGA-CV-7446-01 2 73519760 73519762 GCG - EGR4 In_Frame_Del p.P198del 0.27 TCGA-CV-7446-01 2 79253148 79253148 G T REG3G 5'UTR 0.50 TCGA-CV-7446-01 2 9637328 9637328 A T ADAM17 Silent p.V566V 0.44 TCGA-CV-7446-01 3 100961637 100961637 G A IMPG2 Missense_Mutation p.P973S 0.42 tolerated(0.11) benign(0.158) TCGA-CV-7446-01 3 118621641 118621641 A C IGSF11 Missense_Mutation p.L341W 0.53 tolerated(0.19) possibly_damaging(0.841) TCGA-CV-7446-01 3 129155826 129155826 C G MBD4 Missense_Mutation p.D221H 0.21 tolerated(0.25) benign(0.003) TCGA-CV-7446-01 3 138191502 138191502 G A ESYT3 Missense_Mutation p.G680R 0.46 deleterious(0.05) benign(0.062) TCGA-CV-7446-01 3 138738774 138738774 G T PRR23B Missense_Mutation p.P244T 0.12 tolerated(0.16) benign(0.026) TCGA-CV-7446-01 3 140275400 140275400 G A CLSTN2 Missense_Mutation p.D574N 0.13 tolerated(0.2) benign(0.066) TCGA-CV-7446-01 3 142277573 142277573 A T ATR Missense_Mutation p.M593K 0.38 deleterious(0) benign(0.125) TCGA-CV-7446-01 3 145795702 145795702 T A PLOD2 Missense_Mutation p.R504W 0.14 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-CV-7446-01 3 155267708 155267708 G A PLCH1 Silent p.I398I 0.14 TCGA-CV-7446-01 3 167077706 167077706 C G ZBBX Missense_Mutation p.K128N 0.14 deleterious(0) probably_damaging(0.951) TCGA-CV-7446-01 3 170587980 170587980 G C RPL22L1 5'UTR 0.10 TCGA-CV-7446-01 3 196743181 196743181 C A MFI2 Missense_Mutation p.Q320H 0.05 tolerated(0.17) benign(0.005) TCGA-CV-7446-01 3 98216771 98216771 G C OR5K2 Missense_Mutation p.E83Q 0.13 tolerated(0.54) benign(0.006) TCGA-CV-7446-01 4 108935733 108935733 G C HADH Missense_Mutation p.K136N 0.15 tolerated(0.09) benign(0.048) TCGA-CV-7446-01 4 110915984 110915984 C T EGF Missense_Mutation p.L985F 0.38 deleterious(0.02) probably_damaging(1) TCGA-CV-7446-01 4 119148130 119148130 G C NDST3 Missense_Mutation p.Q604H 0.19 deleterious(0) benign(0.329) TCGA-CV-7446-01 4 126238326 126238326 C T FAT4 Missense_Mutation p.H254Y 0.39 benign(0.112) TCGA-CV-7446-01 4 152058967 152058967 G A SH3D19 Silent p.L525L 0.51 TCGA-CV-7446-01 4 187518091 187518091 G C FAT1 Silent p.L4201L 0.22 TCGA-CV-7446-01 4 187554856 187554856 G A FAT1 Silent p.T1435T 0.49 TCGA-CV-7446-01 4 189068236 189068236 G T TRIML1 Missense_Mutation p.G373W 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7446-01 4 71509442 71509442 G A ENAM Missense_Mutation p.D767N 0.42 deleterious(0.02) probably_damaging(0.913) TCGA-CV-7446-01 4 94159559 94159559 G T GRID2 Missense_Mutation p.G388V 0.47 tolerated(0.15) benign(0.079) TCGA-CV-7446-01 5 140214428 140214428 C G PCDHA7 Missense_Mutation p.L154V 0.52 deleterious_low_confidence(0.01) benign(0.416) TCGA-CV-7446-01 5 140228540 140228540 C G PCDHA9 Missense_Mutation p.L154V 0.24 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-CV-7446-01 5 140562231 140562231 T C PCDHB16 Missense_Mutation p.Y33H 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7446-01 5 171766188 171766188 G C SH3PXD2B Missense_Mutation p.Q641E 0.76 deleterious(0.05) benign(0.103) TCGA-CV-7446-01 5 21755799 21755799 C A CDH12 Missense_Mutation p.G596C 0.44 deleterious(0) probably_damaging(0.999) TCGA-CV-7446-01 5 24487861 24487861 G A CDH10 Nonsense_Mutation p.Q760* 0.41 TCGA-CV-7446-01 5 35763640 35763640 C T SPEF2 Nonsense_Mutation p.R1213* 0.41 TCGA-CV-7446-01 5 37169105 37169105 G A C5orf42 Silent p.L2341L 0.46 TCGA-CV-7446-01 5 85578434 85578434 G T NBPF22P RNA 0.73 TCGA-CV-7446-01 6 10398701 10398701 G A TFAP2A Silent p.H421H 0.75 TCGA-CV-7446-01 6 118475693 118475693 G T SLC35F1 Missense_Mutation p.D87Y 0.77 deleterious(0.02) benign(0.246) TCGA-CV-7446-01 6 152510425 152510425 C G SYNE1 Missense_Mutation p.E7755Q 0.28 benign(0.266) TCGA-CV-7446-01 6 160113793 160113793 G A SOD2 Silent p.I42I 0.33 TCGA-CV-7446-01 6 160430063 160430063 C A IGF2R Missense_Mutation p.A104E 0.52 tolerated(0.65) benign(0.086) TCGA-CV-7446-01 6 29364878 29364878 G A OR12D2 Missense_Mutation p.M134I 0.55 deleterious(0.02) possibly_damaging(0.882) TCGA-CV-7446-01 6 30658718 30658718 G - NRM Frame_Shift_Del p.L12Sfs*74 0.28 TCGA-CV-7446-01 6 30698343 30698343 C G FLOT1 Splice_Site p.X318_splice 0.28 TCGA-CV-7446-01 6 49408029 49408029 G A MUT Missense_Mutation p.R616C 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7446-01 6 90572112 90572146 ACGTTCTCATTATCAGGTTGGCGAGGGTAGCTCAA - CASP8AP2 RNA 0.18 TCGA-CV-7446-01 7 103243886 103243886 C T RELN Silent p.P1066P 0.48 TCGA-CV-7446-01 7 113519400 113519400 G A PPP1R3A Missense_Mutation p.H583Y 0.54 tolerated(0.09) possibly_damaging(0.543) TCGA-CV-7446-01 7 122755464 122755464 C T SLC13A1 3'UTR 0.22 TCGA-CV-7446-01 7 127015049 127015049 T A ZNF800 Missense_Mutation p.N114I 0.05 deleterious(0.01) benign(0.063) TCGA-CV-7446-01 7 141764209 141764209 G C MGAM Silent p.L1457L 0.45 TCGA-CV-7446-01 7 4153692 4153692 C T SDK1 Silent p.N1203N 0.34 TCGA-CV-7446-01 7 43519258 43519258 G A HECW1 Missense_Mutation p.R1050Q 0.51 deleterious(0) probably_damaging(0.999) TCGA-CV-7446-01 7 57187795 57187795 C T ZNF479 Missense_Mutation p.G443S 0.24 deleterious(0.02) probably_damaging(0.917) TCGA-CV-7446-01 7 6628477 6628477 G A ZDHHC4 Missense_Mutation p.R324Q 0.18 deleterious(0.01) benign(0.086) TCGA-CV-7446-01 8 102555627 102555627 G A GRHL2 Missense_Mutation p.S60N 0.35 deleterious(0) probably_damaging(0.999) TCGA-CV-7446-01 8 107719385 107719385 A G OXR1 Intron 0.40 TCGA-CV-7446-01 8 113256656 113256656 T C CSMD3 Missense_Mutation p.N3457D 0.16 deleterious(0.03) benign(0.063) TCGA-CV-7446-01 8 121170426 121170426 C T COL14A1 Missense_Mutation p.S49L 0.20 tolerated(0.1) possibly_damaging(0.794) TCGA-CV-7446-01 8 130859080 130859080 T C FAM49B Missense_Mutation p.N294S 0.21 tolerated(0.81) benign(0.004) TCGA-CV-7446-01 8 135533180 135533180 C T ZFAT Silent p.L1060L 0.15 TCGA-CV-7446-01 8 139890006 139890007 GC - COL22A1 Frame_Shift_Del p.R215Pfs*4 0.38 TCGA-CV-7446-01 8 17491707 17491707 C A PDGFRL Silent p.I308I 0.28 TCGA-CV-7446-01 8 23429090 23429090 C T SLC25A37 Missense_Mutation p.L247F 0.41 tolerated(0.3) benign(0.021) TCGA-CV-7446-01 8 35541166 35541166 G T UNC5D Silent p.S224S 0.31 TCGA-CV-7446-01 8 48809798 48809798 G C PRKDC Missense_Mutation p.A1174G 0.55 benign(0.008) TCGA-CV-7446-01 8 87393860 87393860 T A WWP1 Splice_Site p.X112_splice 0.44 TCGA-CV-7446-01 8 91081457 91081457 G T CALB1 Missense_Mutation p.H80Q 0.49 tolerated(1) benign(0) TCGA-CV-7446-01 9 103109424 103109424 T C TEX10 Missense_Mutation p.M149V 0.63 deleterious(0) probably_damaging(0.997) TCGA-CV-7446-01 9 108425124 108425125 - C TAL2 3'UTR 0.80 TCGA-CV-7446-01 9 90499850 90499850 G A SPATA31E1 Missense_Mutation p.E150K 0.79 tolerated(1) benign(0.026) TCGA-CV-7446-01 9 93636555 93636555 C T SYK Missense_Mutation p.P329S 0.34 tolerated(0.56) benign(0) TCGA-CV-7446-01 X 105011501 105011501 C T IL1RAPL2 Silent p.G636G 0.90 TCGA-CV-7446-01 X 105153470 105153470 G C NRK Missense_Mutation p.E614Q 0.52 tolerated(0.17) benign(0.015) TCGA-CV-7446-01 X 105882774 105882774 G T CXorf57 Missense_Mutation p.A531S 0.21 tolerated(0.19) benign(0.273) TCGA-CV-7446-01 X 142795498 142795498 A G SPANXN2 Silent p.H60H 0.82 TCGA-CV-7446-01 X 152037563 152037563 G C NSDHL Missense_Mutation p.R342T 0.81 deleterious(0) benign(0.131) TCGA-CV-7446-01 X 50052863 50052863 T C CCNB3 Missense_Mutation p.M565T 0.94 tolerated(0.29) benign(0.018) TCGA-CV-7568-01 10 101945462 101945462 C T ERLIN1 5'UTR 0.38 TCGA-CV-7568-01 10 102304787 102304787 C T HIF1AN Silent p.F219F 0.43 TCGA-CV-7568-01 10 102566317 102566317 C T PAX2 Silent p.S272S 0.35 TCGA-CV-7568-01 10 102684486 102684486 C T FAM178A Silent p.A576A 0.30 TCGA-CV-7568-01 10 102684487 102684487 C T FAM178A Missense_Mutation p.P577S 0.31 tolerated(0.18) possibly_damaging(0.864) TCGA-CV-7568-01 10 102732632 102732632 C T SEMA4G 5'UTR 0.36 TCGA-CV-7568-01 10 102732633 102732633 C T SEMA4G 5'UTR 0.36 TCGA-CV-7568-01 10 102739907 102739907 G A SEMA4G Missense_Mutation p.G386D 0.46 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 10 102762580 102762580 C T LZTS2 Silent p.F95F 0.32 TCGA-CV-7568-01 10 102762581 102762581 C T LZTS2 Missense_Mutation p.R96W 0.32 tolerated(0.17) benign(0) TCGA-CV-7568-01 10 102763321 102763321 C T LZTS2 Nonsense_Mutation p.R156* 0.40 TCGA-CV-7568-01 10 104136133 104136133 G A GBF1 Missense_Mutation p.G1330S 0.39 tolerated(0.66) benign(0.002) TCGA-CV-7568-01 10 104158035 104158035 C T NFKB2 Missense_Mutation p.P278L 0.34 deleterious(0) possibly_damaging(0.468) TCGA-CV-7568-01 10 105657400 105657400 C G OBFC1 Missense_Mutation p.R220T 0.31 tolerated(0.08) benign(0.062) TCGA-CV-7568-01 10 105801294 105801294 C T COL17A1 Missense_Mutation p.V852I 0.41 benign(0.034) TCGA-CV-7568-01 10 106118284 106118284 A G CCDC147 Silent p.R65R 0.33 TCGA-CV-7568-01 10 106937929 106937929 G A SORCS3 Missense_Mutation p.M669I 0.43 tolerated(0.11) benign(0.002) TCGA-CV-7568-01 10 108431074 108431074 C T SORCS1 Missense_Mutation p.E704K 0.42 tolerated(0.18) benign(0.352) TCGA-CV-7568-01 10 113924290 113924290 G A GPAM Missense_Mutation p.P434S 0.42 tolerated(0.76) benign(0.004) TCGA-CV-7568-01 10 114135964 114135964 G A ACSL5 5'UTR 0.35 TCGA-CV-7568-01 10 114205320 114205320 T G ZDHHC6 5'UTR 0.40 TCGA-CV-7568-01 10 11505307 11505307 C T USP6NL Silent p.E557E 0.28 TCGA-CV-7568-01 10 11505362 11505362 G A USP6NL Missense_Mutation p.P539L 0.31 deleterious(0) benign(0.197) TCGA-CV-7568-01 10 115338533 115338533 G A HABP2 Missense_Mutation p.G239E 0.34 deleterious(0) probably_damaging(0.989) TCGA-CV-7568-01 10 115973130 115973130 G A TDRD1 Nonsense_Mutation p.W619* 0.33 TCGA-CV-7568-01 10 116060388 116060388 C T AFAP1L2 Missense_Mutation p.R535Q 0.39 deleterious(0.01) possibly_damaging(0.897) TCGA-CV-7568-01 10 116207689 116207689 G A ABLIM1 Missense_Mutation p.P562L 0.36 tolerated(0.05) benign(0.027) TCGA-CV-7568-01 10 117884974 117884974 G A GFRA1 Silent p.T176T 0.33 TCGA-CV-7568-01 10 117884975 117884975 G A GFRA1 Missense_Mutation p.T176I 0.33 deleterious(0) possibly_damaging(0.463) TCGA-CV-7568-01 10 118084500 118084500 G A CCDC172 5'UTR 0.38 TCGA-CV-7568-01 10 118084501 118084501 G A CCDC172 5'UTR 0.38 TCGA-CV-7568-01 10 118897432 118897432 C T VAX1 Missense_Mutation p.E46K 0.34 deleterious(0) unknown(0) TCGA-CV-7568-01 10 118897433 118897433 C T VAX1 Silent p.K45K 0.33 TCGA-CV-7568-01 10 119799986 119799986 G A RAB11FIP2 Silent p.T148T 0.37 TCGA-CV-7568-01 10 119799987 119799987 G A RAB11FIP2 Missense_Mutation p.T148I 0.37 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 10 120450799 120450799 G A CACUL1 Missense_Mutation p.L335F 0.46 deleterious(0.04) possibly_damaging(0.845) TCGA-CV-7568-01 10 121671613 121671613 G A SEC23IP Missense_Mutation p.G417R 0.42 tolerated(0.06) probably_damaging(1) TCGA-CV-7568-01 10 122630711 122630711 C T WDR11 Missense_Mutation p.P442S 0.44 tolerated(0.54) benign(0) TCGA-CV-7568-01 10 124608807 124608807 C T FAM24B Missense_Mutation p.D81N 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-CV-7568-01 10 126490361 126490361 C T FAM175B 5'UTR 0.46 TCGA-CV-7568-01 10 126490394 126490394 C T FAM175B 5'UTR 0.29 TCGA-CV-7568-01 10 126490395 126490395 C T FAM175B 5'UTR 0.28 TCGA-CV-7568-01 10 126681372 126681372 G A CTBP2 Missense_Mutation p.P890L 0.28 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 10 126715138 126715138 G A CTBP2 Silent p.P397P 0.38 TCGA-CV-7568-01 10 126715549 126715549 G A CTBP2 Silent p.A260A 0.38 TCGA-CV-7568-01 10 128147687 128147687 C T C10orf90 Missense_Mutation p.E607K 0.36 deleterious(0.01) benign(0.154) TCGA-CV-7568-01 10 128822988 128822988 G A DOCK1 Missense_Mutation p.E477K 0.36 tolerated(0.05) possibly_damaging(0.57) TCGA-CV-7568-01 10 134648169 134648169 G A TTC40 Silent p.L2285L 0.52 TCGA-CV-7568-01 10 135195063 135195063 C T PAOX Silent p.F256F 0.41 TCGA-CV-7568-01 10 135369531 135369531 C T SYCE1 Silent p.K183K 0.43 TCGA-CV-7568-01 10 14909102 14909102 T C HSPA14 Silent p.S338S 0.35 TCGA-CV-7568-01 10 15760852 15760852 C T ITGA8 Missense_Mutation p.D86N 0.31 tolerated(0.51) benign(0.019) TCGA-CV-7568-01 10 16882500 16882500 G A CUBN Silent p.T3287T 0.44 TCGA-CV-7568-01 10 16955870 16955870 G A CUBN Silent p.T2491T 0.38 TCGA-CV-7568-01 10 18250715 18250715 C T SLC39A12 Missense_Mutation p.S156F 0.33 deleterious(0.02) possibly_damaging(0.713) TCGA-CV-7568-01 10 21097456 21097456 C T NEBL Missense_Mutation p.R915K 0.36 tolerated(0.33) benign(0.011) TCGA-CV-7568-01 10 23321901 23321901 G A ARMC3 Silent p.P786P 0.40 TCGA-CV-7568-01 10 23326475 23326475 C T ARMC3 3'UTR 0.37 TCGA-CV-7568-01 10 23408343 23408343 C T MSRB2 Missense_Mutation p.S136L 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-CV-7568-01 10 24874188 24874188 G A ARHGAP21 Missense_Mutation p.T1677I 0.30 tolerated(0.05) benign(0.414) TCGA-CV-7568-01 10 24874385 24874385 C T ARHGAP21 Silent p.V1611V 0.41 TCGA-CV-7568-01 10 24908777 24908777 G A ARHGAP21 Missense_Mutation p.P683S 0.29 tolerated(0.36) benign(0.003) TCGA-CV-7568-01 10 24908778 24908778 G A ARHGAP21 Silent p.S682S 0.28 TCGA-CV-7568-01 10 255963 255963 G A ZMYND11 Missense_Mutation p.G84E 0.33 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 10 26436377 26436377 G A MYO3A Missense_Mutation p.G842R 0.28 deleterious(0.02) possibly_damaging(0.887) TCGA-CV-7568-01 10 26500951 26500951 G A MYO3A 3'UTR 0.58 TCGA-CV-7568-01 10 26994289 26994289 G A PDSS1 Missense_Mutation p.R101K 0.38 tolerated(1) benign(0.003) TCGA-CV-7568-01 10 28149713 28149713 C T ARMC4 Silent p.R954R 0.39 TCGA-CV-7568-01 10 28149714 28149714 C T ARMC4 Missense_Mutation p.R954K 0.40 tolerated(0.29) benign(0.098) TCGA-CV-7568-01 10 28900804 28900804 C T WAC Missense_Mutation p.P464S 0.40 tolerated(0.27) benign(0.12) TCGA-CV-7568-01 10 30748415 30748415 C T MAP3K8 Missense_Mutation p.P420S 0.33 tolerated_low_confidence(0.47) benign(0.011) TCGA-CV-7568-01 10 3175453 3175453 G A PFKP Missense_Mutation p.E657K 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 10 35456641 35456641 G A CREM Intron 0.38 TCGA-CV-7568-01 10 37419291 37419291 C T ANKRD30A Silent p.I109I 0.44 TCGA-CV-7568-01 10 37438738 37438738 A G ANKRD30A Missense_Mutation p.K480E 0.41 tolerated(0.64) possibly_damaging(0.636) TCGA-CV-7568-01 10 37506784 37506784 G A ANKRD30A Missense_Mutation p.S1026N 0.23 deleterious(0.01) possibly_damaging(0.483) TCGA-CV-7568-01 10 37508061 37508061 G A ANKRD30A Missense_Mutation p.E1085K 0.29 tolerated(0.18) possibly_damaging(0.636) TCGA-CV-7568-01 10 43078459 43078459 G A ZNF33B RNA 0.27 TCGA-CV-7568-01 10 43612121 43612121 G A RET Silent p.T742T 0.38 TCGA-CV-7568-01 10 43695197 43695197 T A RASGEF1A Missense_Mutation p.K259M 0.38 deleterious(0) probably_damaging(0.984) TCGA-CV-7568-01 10 45495857 45495857 G A C10orf25 Missense_Mutation p.P113L 0.28 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-CV-7568-01 10 45938939 45938939 C T ALOX5 Silent p.F509F 0.36 TCGA-CV-7568-01 10 48389383 48389383 G A RBP3 Missense_Mutation p.P499S 0.33 tolerated(0.09) possibly_damaging(0.502) TCGA-CV-7568-01 10 48389614 48389614 G A RBP3 Missense_Mutation p.R422W 0.34 tolerated(0.17) possibly_damaging(0.724) TCGA-CV-7568-01 10 48389615 48389615 G A RBP3 Silent p.I421I 0.33 TCGA-CV-7568-01 10 48413933 48413933 G A GDF2 Missense_Mutation p.S312L 0.41 tolerated(0.11) benign(0.001) TCGA-CV-7568-01 10 48414339 48414339 C T GDF2 Missense_Mutation p.D177N 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-CV-7568-01 10 48438543 48438543 G A GDF10 Silent p.L56L 0.31 TCGA-CV-7568-01 10 49376703 49376703 C T FRMPD2 Missense_Mutation p.E1158K 0.81 deleterious(0.02) probably_damaging(0.942) TCGA-CV-7568-01 10 49431286 49431286 T A FRMPD2 Missense_Mutation p.E399V 0.51 deleterious(0) probably_damaging(0.927) TCGA-CV-7568-01 10 52573626 52573626 G A A1CF Silent p.L446L 0.36 TCGA-CV-7568-01 10 52573680 52573680 C T A1CF Silent p.G428G 0.37 TCGA-CV-7568-01 10 52573681 52573681 C T A1CF Missense_Mutation p.G428E 0.36 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 10 54032216 54032216 G A PRKG1 Missense_Mutation p.E460K 0.36 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 10 5437377 5437377 C T TUBAL3 Silent p.K103K 0.36 TCGA-CV-7568-01 10 5442963 5442963 G A TUBAL3 Nonsense_Mutation p.Q31* 0.33 TCGA-CV-7568-01 10 55698611 55698611 C T PCDH15 Missense_Mutation p.E1113K 0.44 tolerated(0.12) benign(0.101) TCGA-CV-7568-01 10 55849754 55849754 G A PCDH15 Missense_Mutation p.L663F 0.36 deleterious(0.01) benign(0.248) TCGA-CV-7568-01 10 5772975 5772975 C T FAM208B Missense_Mutation p.P338L 0.36 tolerated(0.1) benign(0.037) TCGA-CV-7568-01 10 5782359 5782359 C T FAM208B Silent p.S742S 0.42 TCGA-CV-7568-01 10 62553652 62553652 T G CDK1 Missense_Mutation p.D271E 0.39 tolerated(0.17) benign(0.286) TCGA-CV-7568-01 10 63959550 63959550 G A RTKN2 Silent p.F419F 0.36 TCGA-CV-7568-01 10 68979493 68979493 C T CTNNA3 Missense_Mutation p.D239N 0.37 tolerated(0.07) possibly_damaging(0.822) TCGA-CV-7568-01 10 70332448 70332448 C T TET1 Missense_Mutation p.P118L 0.41 deleterious(0.01) possibly_damaging(0.858) TCGA-CV-7568-01 10 70520823 70520823 C T CCAR1 Silent p.S660S 0.38 TCGA-CV-7568-01 10 70760177 70760177 C T KIAA1279 Intron 0.33 TCGA-CV-7568-01 10 71392976 71392976 G A C10orf35 3'UTR 0.42 TCGA-CV-7568-01 10 72357844 72357844 C T PRF1 Missense_Mutation p.E545K 0.35 tolerated_low_confidence(0.08) benign(0.004) TCGA-CV-7568-01 10 72489106 72489106 C T ADAMTS14 Silent p.V309V 0.33 TCGA-CV-7568-01 10 73450305 73450305 G A CDH23 Missense_Mutation p.E306K 0.35 deleterious(0.03) possibly_damaging(0.805) TCGA-CV-7568-01 10 73539197 73539197 C T CDH23 Silent p.D1792D 0.26 TCGA-CV-7568-01 10 74666457 74666457 T G OIT3 Missense_Mutation p.S216R 0.39 tolerated(0.17) benign(0.001) TCGA-CV-7568-01 10 75406700 75406700 G A SYNPO2L Missense_Mutation p.P904S 0.36 deleterious(0.01) benign(0.242) TCGA-CV-7568-01 10 75530092 75530092 G A SEC24C Missense_Mutation p.E973K 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7568-01 10 7777003 7777003 G A ITIH2 Missense_Mutation p.D636N 0.34 tolerated(0.35) benign(0.008) TCGA-CV-7568-01 10 7841765 7841765 C T ATP5C1 Silent p.F153F 0.39 TCGA-CV-7568-01 10 78778840 78778840 C T KCNMA1 Missense_Mutation p.G649E 0.16 tolerated(0.22) probably_damaging(0.973) TCGA-CV-7568-01 10 79589166 79589166 G A DLG5 Missense_Mutation p.S711F 0.33 deleterious(0) probably_damaging(0.992) TCGA-CV-7568-01 10 81049555 81049555 C T ZMIZ1 Missense_Mutation p.S150F 0.35 possibly_damaging(0.701) TCGA-CV-7568-01 10 81113531 81113531 C T PPIF Missense_Mutation p.S186F 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.693) TCGA-CV-7568-01 10 81113532 81113532 T A PPIF Silent p.S186S 0.48 TCGA-CV-7568-01 10 81373938 81373938 G A SFTPA1 3'UTR 0.38 TCGA-CV-7568-01 10 81921761 81921761 G A ANXA11 Silent p.N370N 0.47 TCGA-CV-7568-01 10 81930561 81930561 C T ANXA11 Missense_Mutation p.G56R 0.31 deleterious(0.03) unknown(0) TCGA-CV-7568-01 10 81930562 81930562 C T ANXA11 Silent p.S55S 0.31 TCGA-CV-7568-01 10 85961613 85961613 C T CDHR1 Silent p.L192L 0.26 TCGA-CV-7568-01 10 85961614 85961614 C T CDHR1 Nonsense_Mutation p.Q193* 0.26 TCGA-CV-7568-01 10 85984392 85984392 G A LRIT2 Silent p.L197L 0.35 TCGA-CV-7568-01 10 87407024 87407024 G A GRID1 Missense_Mutation p.R710W 0.46 deleterious(0) probably_damaging(0.979) TCGA-CV-7568-01 10 89312167 89312167 C A MINPP1 Missense_Mutation p.L466I 0.41 deleterious(0.02) possibly_damaging(0.723) TCGA-CV-7568-01 10 91099088 91099088 G A IFIT3 Missense_Mutation p.G226R 0.51 deleterious(0) probably_damaging(0.964) TCGA-CV-7568-01 10 91099089 91099089 G A IFIT3 Missense_Mutation p.G226E 0.51 deleterious(0) probably_damaging(0.952) TCGA-CV-7568-01 10 91177400 91177400 C T IFIT5 Silent p.L148L 0.45 TCGA-CV-7568-01 10 91178121 91178121 C T IFIT5 Missense_Mutation p.H389Y 0.30 tolerated(0.06) probably_damaging(0.963) TCGA-CV-7568-01 10 95079641 95079641 G A MYOF Silent p.I1862I 0.33 TCGA-CV-7568-01 10 95347060 95347060 C T FFAR4 Silent p.F276F 0.40 TCGA-CV-7568-01 10 95399918 95399918 G A PDE6C Missense_Mutation p.G525E 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-CV-7568-01 10 95720207 95720207 C T PIPSL RNA 0.49 TCGA-CV-7568-01 10 96030264 96030264 C T PLCE1 Missense_Mutation p.R1471C 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 10 96093937 96093937 G A NOC3L Silent p.H800H 0.27 TCGA-CV-7568-01 10 96342814 96342814 C T HELLS Nonsense_Mutation p.Q442* 0.40 TCGA-CV-7568-01 10 97174427 97174427 G A SORBS1 Missense_Mutation p.P212S 0.35 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CV-7568-01 10 97194428 97194428 G A SORBS1 Silent p.I41I 0.23 TCGA-CV-7568-01 10 97583064 97583064 G A ENTPD1 Silent p.V41V 0.32 TCGA-CV-7568-01 10 99376133 99376133 G A MORN4 Missense_Mutation p.P110S 0.28 deleterious(0.04) possibly_damaging(0.641) TCGA-CV-7568-01 10 99376134 99376134 G A MORN4 Silent p.I109I 0.28 TCGA-CV-7568-01 10 99519074 99519074 C T ZFYVE27 3'UTR 0.32 TCGA-CV-7568-01 10 99655718 99655718 C T CRTAC1 Missense_Mutation p.G414E 0.28 tolerated(0.05) possibly_damaging(0.894) TCGA-CV-7568-01 10 99968792 99968792 C T R3HCC1L Silent p.S307S 0.32 TCGA-CV-7568-01 11 100061937 100061937 G A CNTN5 Missense_Mutation p.E554K 0.33 tolerated(0.42) possibly_damaging(0.633) TCGA-CV-7568-01 11 100933207 100933207 G A PGR Missense_Mutation p.S728L 0.36 tolerated(0.2) possibly_damaging(0.904) TCGA-CV-7568-01 11 101776514 101776514 C T ANGPTL5 Missense_Mutation p.M102I 0.40 tolerated(0.1) benign(0.008) TCGA-CV-7568-01 11 102465488 102465488 C T MMP20 Silent p.R318R 0.30 TCGA-CV-7568-01 11 102567175 102567175 G A MMP27 Missense_Mutation p.H277Y 0.36 deleterious(0.04) benign(0.169) TCGA-CV-7568-01 11 103866937 103866937 G A PDGFD Silent p.T122T 0.28 TCGA-CV-7568-01 11 103866938 103866938 G A PDGFD Missense_Mutation p.T122I 0.28 tolerated(0.12) benign(0.026) TCGA-CV-7568-01 11 105775945 105775945 G A GRIA4 Missense_Mutation p.G359E 0.31 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 11 105804674 105804674 C G GRIA4 Missense_Mutation p.T758R 0.41 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 11 10625981 10625981 C T MRVI1 Missense_Mutation p.E572K 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 11 106681075 106681075 G A GUCY1A2 Missense_Mutation p.H446Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 11 110454415 110454415 G A ARHGAP20 Missense_Mutation p.L488F 0.44 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 11 111592632 111592632 C T SIK2 Silent p.L675L 0.34 TCGA-CV-7568-01 11 111957596 111957596 C T SDHD 5'UTR 0.34 TCGA-CV-7568-01 11 113270782 113270782 C T ANKK1 Silent p.H697H 0.46 TCGA-CV-7568-01 11 113270783 113270783 C T ANKK1 Silent p.L698L 0.46 TCGA-CV-7568-01 11 113283503 113283503 G A DRD2 Silent p.L305L 0.39 TCGA-CV-7568-01 11 115047237 115047237 C T CADM1 Missense_Mutation p.G429E 0.36 deleterious(0) possibly_damaging(0.831) TCGA-CV-7568-01 11 1157576 1157576 C T MUC5AC Missense_Mutation p.P253S 0.40 tolerated(0.16) benign(0.011) TCGA-CV-7568-01 11 117242148 117242148 C T CEP164 Missense_Mutation p.S373F 0.45 deleterious(0.02) possibly_damaging(0.704) TCGA-CV-7568-01 11 117395755 117395755 G A DSCAML1 Silent p.S294S 0.43 TCGA-CV-7568-01 11 117988663 117988663 C T TMPRSS4 3'UTR 0.36 TCGA-CV-7568-01 11 118007835 118007835 C T SCN4B Silent p.K198K 0.34 TCGA-CV-7568-01 11 118498114 118498114 C T PHLDB1 Missense_Mutation p.S192F 0.41 deleterious(0) probably_damaging(0.927) TCGA-CV-7568-01 11 118638971 118638971 G A DDX6 Silent p.P153P 0.30 TCGA-CV-7568-01 11 118638972 118638972 G A DDX6 Missense_Mutation p.P153L 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 11 118656871 118656871 G A DDX6 Silent p.G30G 0.36 TCGA-CV-7568-01 11 118765006 118765006 C T CXCR5 Silent p.R251R 0.41 TCGA-CV-7568-01 11 118827128 118827128 G A UPK2 Missense_Mutation p.G23E 0.44 deleterious(0.01) unknown(0) TCGA-CV-7568-01 11 118828850 118828850 G A UPK2 Silent p.G154G 0.37 TCGA-CV-7568-01 11 119031865 119031865 C T ABCG4 3'UTR 0.30 TCGA-CV-7568-01 11 1221192 1221192 C T MUC5AC RNA 0.25 TCGA-CV-7568-01 11 122526702 122526702 C T UBASH3B 5'UTR 0.33 TCGA-CV-7568-01 11 12315195 12315195 G A MICALCL Missense_Mutation p.G73R 0.33 deleterious(0.01) probably_damaging(0.92) TCGA-CV-7568-01 11 12315196 12315196 G A MICALCL Missense_Mutation p.G73E 0.33 tolerated(0.48) benign(0.129) TCGA-CV-7568-01 11 123448163 123448163 G A GRAMD1B Missense_Mutation p.G38R 0.50 tolerated(0.17) probably_damaging(0.944) TCGA-CV-7568-01 11 123624347 123624347 C T OR6X1 Missense_Mutation p.E294K 0.44 tolerated(1) probably_damaging(0.992) TCGA-CV-7568-01 11 123894352 123894352 C T OR10G9 Silent p.L211L 0.38 TCGA-CV-7568-01 11 124252318 124252318 G A OR8B2 Nonsense_Mutation p.Q308* 0.30 TCGA-CV-7568-01 11 124252876 124252876 G A OR8B2 Missense_Mutation p.R122C 0.26 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CV-7568-01 11 124742917 124742917 T G ROBO3 Missense_Mutation p.W490G 0.33 tolerated(0.38) possibly_damaging(0.697) TCGA-CV-7568-01 11 1248001 1248001 G C MUC5B Missense_Mutation p.R119P 0.18 unknown(0) TCGA-CV-7568-01 11 125478115 125478115 C T STT3A Missense_Mutation p.L298F 0.35 tolerated(0.21) benign(0.443) TCGA-CV-7568-01 11 125617640 125617640 G C PATE1 Missense_Mutation p.G57A 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-CV-7568-01 11 125875950 125875950 G A CDON Missense_Mutation p.P519S 0.30 tolerated(0.06) possibly_damaging(0.53) TCGA-CV-7568-01 11 1263792 1263792 G A MUC5B Silent p.T1894T 0.33 TCGA-CV-7568-01 11 1263793 1263793 G A MUC5B Missense_Mutation p.A1895T 0.34 unknown(0) TCGA-CV-7568-01 11 1266767 1266767 C T MUC5B Missense_Mutation p.P2886L 0.29 unknown(0) TCGA-CV-7568-01 11 1266768 1266768 C T MUC5B Silent p.P2886P 0.29 TCGA-CV-7568-01 11 1270590 1270590 G A MUC5B Silent p.A4160A 0.33 TCGA-CV-7568-01 11 132016341 132016341 C T NTM Silent p.G111G 0.30 TCGA-CV-7568-01 11 133801414 133801414 G A IGSF9B Silent p.A434A 0.43 TCGA-CV-7568-01 11 1605991 1605991 G A KRTAP5-1 Silent p.S163S 0.31 TCGA-CV-7568-01 11 1605992 1605992 G A KRTAP5-1 Missense_Mutation p.S163F 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-CV-7568-01 11 1618827 1618827 G A KRTAP5-2 3'UTR 0.47 TCGA-CV-7568-01 11 1643045 1643045 G A KRTAP5-4 Silent p.S93S 0.11 TCGA-CV-7568-01 11 17498277 17498277 C T ABCC8 Missense_Mutation p.R16Q 0.37 tolerated(0.07) benign(0.011) TCGA-CV-7568-01 11 17793577 17793577 C T KCNC1 Silent p.V312V 0.33 TCGA-CV-7568-01 11 18327005 18327005 G A HPS5 Missense_Mutation p.S287F 0.30 deleterious(0.02) benign(0.272) TCGA-CV-7568-01 11 18505527 18505527 C T TSG101 Missense_Mutation p.E245K 0.27 tolerated(0.86) benign(0.002) TCGA-CV-7568-01 11 18505528 18505528 C T TSG101 Silent p.E244E 0.27 TCGA-CV-7568-01 11 18637344 18637344 G A SPTY2D1 Silent p.P159P 0.34 TCGA-CV-7568-01 11 19077804 19077804 C T MRGPRX2 Missense_Mutation p.G49E 0.30 deleterious(0) possibly_damaging(0.723) TCGA-CV-7568-01 11 19077805 19077805 C T MRGPRX2 Missense_Mutation p.G49R 0.30 deleterious(0) possibly_damaging(0.837) TCGA-CV-7568-01 11 26586799 26586799 G A MUC15 Missense_Mutation p.P230S 0.28 deleterious(0.04) probably_damaging(0.932) TCGA-CV-7568-01 11 26718756 26718756 C T SLC5A12 Missense_Mutation p.G332E 0.36 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 11 27149037 27149037 C T BBOX1 3'UTR 0.24 TCGA-CV-7568-01 11 27390214 27390214 C T LGR4 Missense_Mutation p.E686K 0.43 tolerated(0.05) benign(0.046) TCGA-CV-7568-01 11 280493 280493 C A NLRP6 Silent p.I253I 0.41 TCGA-CV-7568-01 11 280494 280494 C T NLRP6 Silent p.L254L 0.45 TCGA-CV-7568-01 11 30032255 30032255 G A KCNA4 3'UTR 0.32 TCGA-CV-7568-01 11 30033107 30033107 G A KCNA4 Silent p.I373I 0.33 TCGA-CV-7568-01 11 30033388 30033388 C T KCNA4 Missense_Mutation p.E280K 0.21 tolerated(0.05) benign(0.217) TCGA-CV-7568-01 11 30928163 30928163 G A DCDC1 Missense_Mutation p.P1343L 0.19 tolerated(0.07) possibly_damaging(0.851) TCGA-CV-7568-01 11 31531419 31531419 C T ELP4 Nonsense_Mutation p.Q30* 0.34 TCGA-CV-7568-01 11 32956826 32956826 C T QSER1 Missense_Mutation p.P1212L 0.41 tolerated(0.09) benign(0.004) TCGA-CV-7568-01 11 33564449 33564449 C T KIAA1549L Missense_Mutation p.P150L 0.35 tolerated_low_confidence(0.13) benign(0.008) TCGA-CV-7568-01 11 33564819 33564819 G A KIAA1549L Silent p.G273G 0.39 TCGA-CV-7568-01 11 35323144 35323144 C T SLC1A2 Missense_Mutation p.G260E 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7568-01 11 3685393 3685393 T A ART1 Missense_Mutation p.F320I 0.44 deleterious_low_confidence(0.04) benign(0.011) TCGA-CV-7568-01 11 40136049 40136049 A T LRRC4C Nonsense_Mutation p.Y598* 0.41 TCGA-CV-7568-01 11 40137317 40137317 G A LRRC4C Nonsense_Mutation p.R176* 0.39 TCGA-CV-7568-01 11 40137329 40137329 G A LRRC4C Missense_Mutation p.P172S 0.39 deleterious(0.04) possibly_damaging(0.605) TCGA-CV-7568-01 11 43284052 43284052 C T HNRNPKP3 RNA 0.35 TCGA-CV-7568-01 11 4388762 4388762 C T OR52B4 Missense_Mutation p.G255E 0.32 tolerated(0.07) possibly_damaging(0.905) TCGA-CV-7568-01 11 44073226 44073226 C T ACCSL Silent p.C243C 0.37 TCGA-CV-7568-01 11 44074302 44074302 A G ACCSL Missense_Mutation p.E288G 0.40 tolerated(0.05) benign(0.081) TCGA-CV-7568-01 11 44297187 44297187 T G ALX4 Missense_Mutation p.E163A 0.32 deleterious(0.01) probably_damaging(0.956) TCGA-CV-7568-01 11 45246289 45246289 C T PRDM11 Missense_Mutation p.R422W 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7568-01 11 45671279 45671279 C T CHST1 Missense_Mutation p.V399I 0.33 tolerated(1) benign(0.001) TCGA-CV-7568-01 11 4621896 4621896 G A TRIM68 Silent p.G356G 0.30 TCGA-CV-7568-01 11 46748059 46748059 G A F2 Missense_Mutation p.E296K 0.31 tolerated(0.37) benign(0.004) TCGA-CV-7568-01 11 48285517 48285517 T G OR4X1 Silent p.A35A 0.41 TCGA-CV-7568-01 11 48328429 48328429 A G OR4S1 Missense_Mutation p.I219V 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-CV-7568-01 11 48346832 48346832 G A OR4C3 Missense_Mutation p.G114R 0.16 tolerated(0.53) possibly_damaging(0.807) TCGA-CV-7568-01 11 4928829 4928829 C T OR51A7 Missense_Mutation p.S77F 0.41 deleterious(0.02) possibly_damaging(0.698) TCGA-CV-7568-01 11 4945214 4945214 G A OR51G1 Missense_Mutation p.S119F 0.40 deleterious(0.04) benign(0.321) TCGA-CV-7568-01 11 5221712 5221712 G A OR51V1 Silent p.S73S 0.39 TCGA-CV-7568-01 11 5274590 5274590 T A HBG2 Nonsense_Mutation p.K121* 0.34 TCGA-CV-7568-01 11 5275715 5275715 C T HBG2 Missense_Mutation p.R41K 0.20 deleterious(0.04) benign(0.258) TCGA-CV-7568-01 11 533830 533830 C A HRAS Nonsense_Mutation p.E76* 0.33 TCGA-CV-7568-01 11 5443499 5443499 G A OR51Q1 Silent p.E23E 0.33 TCGA-CV-7568-01 11 55065335 55065335 C T TRIM51HP RNA 0.38 TCGA-CV-7568-01 11 55110910 55110910 A G OR4A16 Silent p.K78K 0.36 TCGA-CV-7568-01 11 55321984 55321984 G A OR4C15 Missense_Mutation p.G68R 0.41 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-7568-01 11 55371481 55371481 G A OR4C11 Silent p.A123A 0.40 TCGA-CV-7568-01 11 55761640 55761640 C T OR5F1 Silent p.L154L 0.49 TCGA-CV-7568-01 11 55798563 55798563 C T OR5AS1 Silent p.I223I 0.35 TCGA-CV-7568-01 11 55890546 55890546 G A OR8H3 Missense_Mutation p.G233E 0.50 deleterious(0) possibly_damaging(0.729) TCGA-CV-7568-01 11 55927656 55927656 G A OR8K5 Silent p.I46I 0.33 TCGA-CV-7568-01 11 56000423 56000423 C T OR5T2 Missense_Mutation p.G80E 0.40 deleterious(0) benign(0.417) TCGA-CV-7568-01 11 56114036 56114036 C T OR8K1 Silent p.F174F 0.40 TCGA-CV-7568-01 11 56114290 56114290 G A OR8K1 Missense_Mutation p.G259E 0.35 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-CV-7568-01 11 56309824 56309824 G A OR5M11 Silent p.L304L 0.38 TCGA-CV-7568-01 11 56309825 56309825 G A OR5M11 Silent p.V303V 0.38 TCGA-CV-7568-01 11 56344919 56344919 G A OR5M10 Silent p.S93S 0.39 TCGA-CV-7568-01 11 56431806 56431806 C T OR5AR1 Silent p.F215F 0.41 TCGA-CV-7568-01 11 56756814 56756814 C T OR5AK2 Silent p.I142I 0.39 TCGA-CV-7568-01 11 57256729 57256729 G A SLC43A1 Missense_Mutation p.L444F 0.37 deleterious(0) probably_damaging(0.968) TCGA-CV-7568-01 11 57381961 57381961 C T SERPING1 Silent p.V470V 0.48 TCGA-CV-7568-01 11 57971378 57971378 G A OR1S2 Silent p.P92P 0.30 TCGA-CV-7568-01 11 57996128 57996128 C T OR10Q1 Missense_Mutation p.E74K 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 11 58979269 58979269 T C MPEG1 Missense_Mutation p.N357S 0.33 deleterious(0) possibly_damaging(0.838) TCGA-CV-7568-01 11 59189730 59189730 T C OR5A2 Missense_Mutation p.T233A 0.29 tolerated(0.11) benign(0.004) TCGA-CV-7568-01 11 59245051 59245051 C T OR4D10 Missense_Mutation p.T50I 0.34 tolerated(0.26) benign(0.024) TCGA-CV-7568-01 11 59480636 59480636 C T OR10V1 Missense_Mutation p.R228Q 0.40 tolerated(0.17) benign(0.055) TCGA-CV-7568-01 11 59480701 59480701 G A OR10V1 Silent p.I206I 0.37 TCGA-CV-7568-01 11 59631446 59631446 C T TCN1 Missense_Mutation p.G65R 0.35 tolerated(0.14) possibly_damaging(0.79) TCGA-CV-7568-01 11 6008078 6008078 G A OR52L1 Missense_Mutation p.P28L 0.29 deleterious(0.03) benign(0.01) TCGA-CV-7568-01 11 60184188 60184188 G A MS4A14 Missense_Mutation p.D616N 0.48 tolerated(0.4) benign(0.017) TCGA-CV-7568-01 11 60184305 60184305 C T MS4A14 Nonsense_Mutation p.Q655* 0.44 TCGA-CV-7568-01 11 60197151 60197151 G A MS4A5 Missense_Mutation p.D2N 0.41 tolerated(0.41) benign(0.006) TCGA-CV-7568-01 11 60201298 60201298 C T MS4A5 Missense_Mutation p.L134F 0.41 deleterious(0.05) probably_damaging(0.999) TCGA-CV-7568-01 11 60694842 60694842 G A TMEM132A Silent p.R89R 0.34 TCGA-CV-7568-01 11 60892578 60892578 G A CD5 Missense_Mutation p.E452K 0.29 deleterious(0) probably_damaging(0.988) TCGA-CV-7568-01 11 61048417 61048417 G A VWCE Missense_Mutation p.L360F 0.24 tolerated(0.07) benign(0.025) TCGA-CV-7568-01 11 6129110 6129110 C T OR56B4 Silent p.S34S 0.39 TCGA-CV-7568-01 11 61291312 61291312 G A SYT7 Silent p.I373I 0.37 TCGA-CV-7568-01 11 61631298 61631298 G A FADS2 Intron 0.37 TCGA-CV-7568-01 11 61672226 61672226 C T RAB3IL1 Silent p.E262E 0.56 TCGA-CV-7568-01 11 618799 618799 C T CDHR5 Missense_Mutation p.G587E 0.34 tolerated(0.15) benign(0.003) TCGA-CV-7568-01 11 62290619 62290619 G A AHNAK Missense_Mutation p.P3757L 0.41 probably_damaging(1) TCGA-CV-7568-01 11 62434119 62434119 G A METTL12 Missense_Mutation p.D107N 0.32 deleterious(0.02) benign(0.072) TCGA-CV-7568-01 11 63486458 63486458 T A RTN3 Missense_Mutation p.F162I 0.46 deleterious(0.03) benign(0.037) TCGA-CV-7568-01 11 63963214 63963214 C T STIP1 Missense_Mutation p.P201S 0.29 tolerated(0.17) benign(0.009) TCGA-CV-7568-01 11 64037639 64037639 G A BAD 3'UTR 0.50 TCGA-CV-7568-01 11 64037640 64037640 G A BAD 3'UTR 0.50 TCGA-CV-7568-01 11 64398030 64398030 C T NRXN2 Missense_Mutation p.G1201R 0.26 tolerated(0.29) probably_damaging(1) TCGA-CV-7568-01 11 64398031 64398031 C T NRXN2 Silent p.V1200V 0.26 TCGA-CV-7568-01 11 64521441 64521441 C T PYGM Silent p.E383E 0.21 TCGA-CV-7568-01 11 64595054 64595054 C T CDC42BPG Silent p.L1365L 0.30 TCGA-CV-7568-01 11 64938844 64938844 G A SPDYC Missense_Mutation p.D25N 0.32 tolerated(0.15) possibly_damaging(0.723) TCGA-CV-7568-01 11 65826342 65826342 C T SF3B2 Silent p.P336P 0.27 TCGA-CV-7568-01 11 66133980 66133980 G A SLC29A2 Silent p.D263D 0.35 TCGA-CV-7568-01 11 66190641 66190641 C T NPAS4 Missense_Mutation p.S249L 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 11 66359329 66359329 G A CCDC87 Silent p.T386T 0.42 TCGA-CV-7568-01 11 66444239 66444243 GACCG AAC RBM4B Frame_Shift_Del p.P103Rfs*5 0.25 TCGA-CV-7568-01 11 6653331 6653331 C T DCHS1 Missense_Mutation p.G1138R 0.35 deleterious(0) probably_damaging(0.991) TCGA-CV-7568-01 11 67067492 67067492 C T ANKRD13D Missense_Mutation p.T324I 0.38 deleterious(0.05) probably_damaging(0.911) TCGA-CV-7568-01 11 67207899 67207899 C T CORO1B Silent p.E256E 0.27 TCGA-CV-7568-01 11 67433603 67433603 G A ALDH3B2 Silent p.I103I 0.37 TCGA-CV-7568-01 11 68115391 68115391 C T LRP5 Silent p.T56T 0.38 TCGA-CV-7568-01 11 68207318 68207318 C T LRP5 Silent p.D1474D 0.55 TCGA-CV-7568-01 11 68207319 68207319 C T LRP5 Missense_Mutation p.R1475W 0.55 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 11 68367938 68367938 T A PPP6R3 Missense_Mutation p.F723Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 11 68517757 68517757 G A MTL5 Silent p.F124F 0.36 TCGA-CV-7568-01 11 68552336 68552336 G A CPT1A Silent p.T370T 0.35 TCGA-CV-7568-01 11 68830447 68830447 G A TPCN2 Silent p.P214P 0.44 TCGA-CV-7568-01 11 68830448 68830448 G A TPCN2 Missense_Mutation p.E215K 0.44 tolerated(0.05) possibly_damaging(0.672) TCGA-CV-7568-01 11 6891406 6891406 C T OR10A2 Missense_Mutation p.P141S 0.43 tolerated(0.05) possibly_damaging(0.764) TCGA-CV-7568-01 11 6898760 6898760 G A OR10A4 Silent p.R294R 0.40 TCGA-CV-7568-01 11 6942440 6942440 C T OR2D3 Missense_Mutation p.R70C 0.32 deleterious(0.01) benign(0.008) TCGA-CV-7568-01 11 73073652 73073652 C T ARHGEF17 Silent p.L1623L 0.55 TCGA-CV-7568-01 11 73555875 73555875 G T MRPL48 Silent p.V75V 0.30 TCGA-CV-7568-01 11 73785530 73785530 G A C2CD3 Silent p.S1573S 0.34 TCGA-CV-7568-01 11 74414543 74414543 G A CHRDL2 Silent p.A251A 0.44 TCGA-CV-7568-01 11 74559421 74559421 A C XRRA1 Missense_Mutation p.D481E 0.50 tolerated(1) benign(0.005) TCGA-CV-7568-01 11 76062453 76062453 G A PRKRIR Missense_Mutation p.P581S 0.33 deleterious(0.01) probably_damaging(0.969) TCGA-CV-7568-01 11 76062454 76062454 G A PRKRIR Silent p.V580V 0.33 TCGA-CV-7568-01 11 76174919 76174919 C T C11orf30 Missense_Mutation p.S209F 0.39 deleterious(0) possibly_damaging(0.828) TCGA-CV-7568-01 11 77412960 77412960 C T RSF1 Silent p.G438G 0.31 TCGA-CV-7568-01 11 7847156 7847156 G A OR5P3 Missense_Mutation p.R122C 0.38 deleterious(0.01) benign(0.165) TCGA-CV-7568-01 11 7982492 7982492 G A NLRP10 Missense_Mutation p.L223F 0.40 deleterious(0.01) possibly_damaging(0.722) TCGA-CV-7568-01 11 8148203 8148203 T C RIC3 Intron 0.41 TCGA-CV-7568-01 11 8435192 8435192 C T STK33 Missense_Mutation p.M398I 0.45 deleterious(0.02) probably_damaging(0.918) TCGA-CV-7568-01 11 86778790 86778790 C T TMEM135 Missense_Mutation p.P66S 0.38 deleterious(0.03) benign(0.341) TCGA-CV-7568-01 11 87032374 87032374 G A TMEM135 Silent p.%3D 0.35 TCGA-CV-7568-01 11 8704256 8704256 G A RPL27A 5'UTR 0.40 TCGA-CV-7568-01 11 89405125 89405125 A T FOLH1B RNA 0.35 TCGA-CV-7568-01 11 89431691 89431691 G A FOLH1B RNA 0.35 TCGA-CV-7568-01 11 902274 902274 G A CHID1 Silent p.I131I 0.45 TCGA-CV-7568-01 11 92085265 92085265 G A FAT3 5'UTR 0.22 TCGA-CV-7568-01 11 92085508 92085508 G A FAT3 Nonsense_Mutation p.W77* 0.31 TCGA-CV-7568-01 11 92085509 92085509 G A FAT3 Nonsense_Mutation p.W77* 0.31 TCGA-CV-7568-01 11 92086231 92086231 G A FAT3 Missense_Mutation p.G318E 0.45 benign(0.006) TCGA-CV-7568-01 11 92088500 92088500 G A FAT3 Silent p.R1074R 0.42 TCGA-CV-7568-01 11 9225624 9225624 C T DENND5A Missense_Mutation p.E178K 0.44 tolerated(0.35) benign(0.002) TCGA-CV-7568-01 11 92531002 92531002 G A FAT3 Missense_Mutation p.G1608E 0.47 probably_damaging(1) TCGA-CV-7568-01 11 92531550 92531550 T C FAT3 Silent p.L1791L 0.48 TCGA-CV-7568-01 11 92577555 92577555 G A FAT3 Silent p.R3674R 0.44 TCGA-CV-7568-01 11 92901171 92901171 G A SLC36A4 Missense_Mutation p.S236L 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 11 93088609 93088609 G A CCDC67 Missense_Mutation p.M34I 0.27 tolerated(0.08) benign(0.011) TCGA-CV-7568-01 11 93821974 93821974 C T HEPHL1 Nonsense_Mutation p.Q712* 0.39 TCGA-CV-7568-01 11 93822041 93822041 C T HEPHL1 Missense_Mutation p.T734I 0.36 tolerated(0.19) benign(0.032) TCGA-CV-7568-01 11 93911558 93911558 C T PANX1 Silent p.L115L 0.41 TCGA-CV-7568-01 12 101576605 101576605 G A SLC5A8 Silent p.L381L 0.76 TCGA-CV-7568-01 12 102025393 102025393 C T MYBPC1 Silent p.L87L 0.80 TCGA-CV-7568-01 12 102811603 102811603 C T IGF1 Missense_Mutation p.G194E 0.76 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-CV-7568-01 12 103695916 103695916 A G C12orf42 Silent p.S351S 0.80 TCGA-CV-7568-01 12 104378614 104378614 G A TDG Missense_Mutation p.D294N 0.28 tolerated(0.16) benign(0.006) TCGA-CV-7568-01 12 105381946 105381946 T G C12orf45 Silent p.G39G 0.79 TCGA-CV-7568-01 12 106734726 106734726 G A TCP11L2 Missense_Mutation p.G422D 0.54 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 107208848 107208848 C T RIC8B Silent p.F169F 0.29 TCGA-CV-7568-01 12 108985354 108985354 G A TMEM119 Missense_Mutation p.P269L 0.28 deleterious_low_confidence(0) benign(0.155) TCGA-CV-7568-01 12 109509480 109509480 C T USP30 Missense_Mutation p.R182W 0.18 deleterious(0) possibly_damaging(0.893) TCGA-CV-7568-01 12 109684212 109684212 A G ACACB Missense_Mutation p.M1844V 0.26 tolerated(0.09) benign(0.005) TCGA-CV-7568-01 12 109690903 109690903 C T ACACB Silent p.T1995T 0.27 TCGA-CV-7568-01 12 109972428 109972428 G A UBE3B Silent p.R1016R 0.56 TCGA-CV-7568-01 12 110780229 110780229 C T ATP2A2 Missense_Mutation p.S765L 0.61 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 110783811 110783811 C T ATP2A2 Missense_Mutation p.S916F 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 12 110783812 110783812 C T ATP2A2 Silent p.S916S 0.28 TCGA-CV-7568-01 12 111342495 111342495 C T CCDC63 Silent p.N482N 0.30 TCGA-CV-7568-01 12 111746270 111746270 G T CUX2 Nonsense_Mutation p.E400* 0.31 TCGA-CV-7568-01 12 11214525 11214525 C A TAS2R46 Missense_Mutation p.R123S 0.37 tolerated(0.08) benign(0.128) TCGA-CV-7568-01 12 112630477 112630477 G A HECTD4 Missense_Mutation p.A2914V 0.25 benign(0.075) TCGA-CV-7568-01 12 112646363 112646363 C T HECTD4 Missense_Mutation p.D2501N 0.19 benign(0.003) TCGA-CV-7568-01 12 113553841 113553841 G A RASAL1 Silent p.A249A 0.71 TCGA-CV-7568-01 12 113553842 113553842 G A RASAL1 Missense_Mutation p.A249V 0.71 deleterious(0.01) possibly_damaging(0.905) TCGA-CV-7568-01 12 11420854 11420854 G A PRB3 Missense_Mutation p.S110F 0.27 deleterious(0.04) unknown(0) TCGA-CV-7568-01 12 11546120 11546120 G A PRB2 Nonsense_Mutation p.R298* 0.34 TCGA-CV-7568-01 12 116406782 116406782 G A MED13L Missense_Mutation p.S2063F 0.51 tolerated(0.19) probably_damaging(0.977) TCGA-CV-7568-01 12 117465256 117465256 T C FBXW8 Silent p.P533P 0.31 TCGA-CV-7568-01 12 118199103 118199103 C T KSR2 Silent p.P233P 0.29 TCGA-CV-7568-01 12 12022503 12022503 C T ETV6 Silent p.S203S 0.35 TCGA-CV-7568-01 12 120585974 120585974 G A GCN1L1 Silent p.L1575L 0.16 TCGA-CV-7568-01 12 120585975 120585975 G A GCN1L1 Silent p.I1574I 0.16 TCGA-CV-7568-01 12 120602165 120602165 A T GCN1L1 Missense_Mutation p.L608Q 0.51 probably_damaging(0.981) TCGA-CV-7568-01 12 120750389 120750389 G C SIRT4 Missense_Mutation p.E210Q 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-CV-7568-01 12 120763812 120763812 C T PLA2G1B Missense_Mutation p.D16N 0.28 tolerated(0.33) benign(0.088) TCGA-CV-7568-01 12 12232649 12232649 T C BCL2L14 Missense_Mutation p.V137A 0.35 tolerated(0.31) possibly_damaging(0.475) TCGA-CV-7568-01 12 123019327 123019327 C T KNTC1 Silent p.V82V 0.36 TCGA-CV-7568-01 12 123089936 123089936 C T KNTC1 Silent p.L1824L 0.47 TCGA-CV-7568-01 12 123200389 123200389 G A HCAR3 Missense_Mutation p.P299L 0.61 deleterious(0) benign(0.407) TCGA-CV-7568-01 12 123481402 123481402 G A PITPNM2 Missense_Mutation p.P510S 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7568-01 12 123482103 123482103 G A PITPNM2 Missense_Mutation p.P414L 0.27 deleterious(0.04) benign(0.074) TCGA-CV-7568-01 12 124156103 124156103 C T TCTN2 Silent p.S44S 0.29 TCGA-CV-7568-01 12 124817682 124817682 T C NCOR2 Missense_Mutation p.E2250G 0.19 probably_damaging(0.987) TCGA-CV-7568-01 12 124824683 124824683 G A NCOR2 Silent p.S1852S 0.54 TCGA-CV-7568-01 12 124824853 124824853 G A NCOR2 Silent p.P1825P 0.32 TCGA-CV-7568-01 12 124824864 124824864 C T NCOR2 Missense_Mutation p.E1822K 0.36 probably_damaging(0.99) TCGA-CV-7568-01 12 1250819 1250819 G A ERC1 Missense_Mutation p.E535K 0.36 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 12 125435018 125435018 G A DHX37 Missense_Mutation p.P1021L 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 125435019 125435019 G A DHX37 Missense_Mutation p.P1021S 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 125509700 125509700 C T BRI3BP Silent p.I160I 0.16 TCGA-CV-7568-01 12 125587578 125587578 C T AACS Missense_Mutation p.P240S 0.19 deleterious(0.01) possibly_damaging(0.734) TCGA-CV-7568-01 12 125587579 125587579 C T AACS Missense_Mutation p.P240L 0.19 deleterious(0) probably_damaging(0.98) TCGA-CV-7568-01 12 125811183 125811183 C A TMEM132B Missense_Mutation p.A5E 0.31 tolerated_low_confidence(1) unknown(0) TCGA-CV-7568-01 12 12630841 12630841 C T DUSP16 Silent p.K308K 0.30 TCGA-CV-7568-01 12 12966262 12966262 C T DDX47 5'Flank 0.33 TCGA-CV-7568-01 12 12966263 12966263 C T DDX47 5'Flank 0.33 TCGA-CV-7568-01 12 13061788 13061788 C T GPRC5A Missense_Mutation p.S202F 0.37 deleterious(0) probably_damaging(0.933) TCGA-CV-7568-01 12 131276418 131276418 G A STX2 3'UTR 0.50 TCGA-CV-7568-01 12 132471079 132471079 C T EP400 Silent p.L650L 0.28 TCGA-CV-7568-01 12 132471080 132471080 C T EP400 Missense_Mutation p.P651S 0.28 unknown(0) TCGA-CV-7568-01 12 132514262 132514262 C T EP400 Missense_Mutation p.P1800S 0.24 unknown(0) TCGA-CV-7568-01 12 132549425 132549425 C T EP400 Silent p.A2849A 0.26 TCGA-CV-7568-01 12 132549426 132549426 C T EP400 Missense_Mutation p.R2850W 0.25 probably_damaging(0.999) TCGA-CV-7568-01 12 133393162 133393162 G A GOLGA3 Missense_Mutation p.L124F 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7568-01 12 133779348 133779348 C T ZNF268 Missense_Mutation p.P359L 0.50 deleterious(0) benign(0.009) TCGA-CV-7568-01 12 2027517 2027517 G A CACNA2D4 Silent p.P41P 0.78 TCGA-CV-7568-01 12 2027518 2027518 G A CACNA2D4 Missense_Mutation p.P41L 0.78 tolerated_low_confidence(0.51) benign(0.001) TCGA-CV-7568-01 12 20801789 20801789 G A PDE3A Silent p.K911K 0.29 TCGA-CV-7568-01 12 20876184 20876184 G A SLCO1C1 Silent p.V394V 0.39 TCGA-CV-7568-01 12 21011438 21011438 G A LST3 Missense_Mutation p.G98R 0.42 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 21243032 21243032 G A SLCO1B7 Missense_Mutation p.E639K 0.38 tolerated(0.49) benign(0.086) TCGA-CV-7568-01 12 21355470 21355470 G A SLCO1B1 Missense_Mutation p.G394E 0.36 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 12 21370150 21370150 G A SLCO1B1 Missense_Mutation p.R532K 0.36 tolerated(0.57) benign(0.007) TCGA-CV-7568-01 12 247686 247686 C T IQSEC3 Missense_Mutation p.S386F 0.62 deleterious(0) possibly_damaging(0.864) TCGA-CV-7568-01 12 24995057 24995057 C T BCAT1 Missense_Mutation p.G271E 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 24995058 24995058 C T BCAT1 Missense_Mutation p.G271R 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 24995059 24995059 C T BCAT1 Silent p.V270V 0.19 TCGA-CV-7568-01 12 26589225 26589225 G A ITPR2 Missense_Mutation p.S2233F 0.16 deleterious(0) possibly_damaging(0.787) TCGA-CV-7568-01 12 31116808 31116808 G A TSPAN11 Silent p.E44E 0.38 TCGA-CV-7568-01 12 3149530 3149530 G A TEAD4 Splice_Site p.X398_splice 0.35 TCGA-CV-7568-01 12 3149531 3149531 G A TEAD4 Missense_Mutation p.V398M 0.35 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 12 31600532 31600532 C T DENND5B Missense_Mutation p.V601I 0.31 tolerated(0.49) benign(0.003) TCGA-CV-7568-01 12 3647749 3647749 G A PRMT8 Intron 0.38 TCGA-CV-7568-01 12 3757680 3757680 C T EFCAB4B Intron 0.25 TCGA-CV-7568-01 12 39763620 39763620 G A KIF21A Missense_Mutation p.L121F 0.37 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 12 39763621 39763621 G A KIF21A Silent p.H120H 0.37 TCGA-CV-7568-01 12 42481617 42481617 G A GXYLT1 Missense_Mutation p.R432C 0.37 tolerated(0.14) benign(0.39) TCGA-CV-7568-01 12 438016 438016 C T KDM5A Silent p.E651E 0.33 TCGA-CV-7568-01 12 44191151 44191151 G A TWF1 Silent p.F245F 0.29 TCGA-CV-7568-01 12 45410057 45410057 G A DBX2 3'UTR 0.29 TCGA-CV-7568-01 12 46245164 46245164 C T ARID2 Silent p.P1086P 0.35 TCGA-CV-7568-01 12 4736590 4736590 G A AKAP3 Missense_Mutation p.S493F 0.29 deleterious(0.03) benign(0.446) TCGA-CV-7568-01 12 48090187 48090187 C T RPAP3 Splice_Site p.X140_splice 0.25 TCGA-CV-7568-01 12 48367032 48367032 G C COL2A1 3'UTR 0.42 TCGA-CV-7568-01 12 48372458 48372458 G A COL2A1 Silent p.G939G 0.34 TCGA-CV-7568-01 12 48458913 48458913 G A SENP1 Nonsense_Mutation p.Q404* 0.37 TCGA-CV-7568-01 12 48596794 48596794 G A OR10AD1 Silent p.S94S 0.40 TCGA-CV-7568-01 12 48596795 48596795 G A OR10AD1 Missense_Mutation p.S94F 0.40 deleterious(0) possibly_damaging(0.83) TCGA-CV-7568-01 12 48723521 48723521 C T H1FNT Silent p.A149A 0.45 TCGA-CV-7568-01 12 48888756 48888756 C T C12orf54 3'UTR 0.40 TCGA-CV-7568-01 12 48919588 48919588 C T OR8S1 Silent p.P58P 0.35 TCGA-CV-7568-01 12 49373452 49373452 G A WNT1 Nonsense_Mutation p.W102* 0.38 TCGA-CV-7568-01 12 49412645 49412645 G A PRKAG1 5'Flank 0.64 TCGA-CV-7568-01 12 49416621 49416621 A T KMT2D Missense_Mutation p.Y5364N 0.45 unknown(0) TCGA-CV-7568-01 12 49420672 49420672 G A KMT2D Missense_Mutation p.P5026L 0.41 unknown(0) TCGA-CV-7568-01 12 49433077 49433077 G A KMT2D Missense_Mutation p.S2765F 0.36 possibly_damaging(0.607) TCGA-CV-7568-01 12 49484969 49484969 G A DHH Silent p.A169A 0.37 TCGA-CV-7568-01 12 51112497 51112497 G A DIP2B Missense_Mutation p.G953S 0.32 tolerated(0.05) possibly_damaging(0.831) TCGA-CV-7568-01 12 51135298 51135298 G A DIP2B Missense_Mutation p.R1485Q 0.42 deleterious(0.01) possibly_damaging(0.513) TCGA-CV-7568-01 12 5155095 5155095 G A KCNA5 Silent p.V594V 0.53 TCGA-CV-7568-01 12 51632616 51632616 G A DAZAP2 5'UTR 0.41 TCGA-CV-7568-01 12 52200862 52200862 C T SCN8A Silent p.I1864I 0.44 TCGA-CV-7568-01 12 52283227 52283227 G A ANKRD33 Missense_Mutation p.G200R 0.37 deleterious(0) probably_damaging(0.993) TCGA-CV-7568-01 12 52642552 52642552 C T KRT7 3'UTR 0.27 TCGA-CV-7568-01 12 52714879 52714879 G A KRT83 Missense_Mutation p.P81S 0.34 deleterious(0.02) benign(0.178) TCGA-CV-7568-01 12 52797673 52797673 C T KRT82 Silent p.K144K 0.51 TCGA-CV-7568-01 12 52818276 52818293 GGGTAGAGGGAGCCATGG - KRT75 3'UTR 0.29 TCGA-CV-7568-01 12 52961457 52961457 G A KRT74 Missense_Mutation p.S459F 0.36 deleterious(0.01) possibly_damaging(0.494) TCGA-CV-7568-01 12 53189633 53189633 C T KRT3 Missense_Mutation p.S65N 0.37 tolerated(0.19) unknown(0) TCGA-CV-7568-01 12 53223873 53223873 C T KRT79 Missense_Mutation p.M263I 0.35 deleterious(0.03) benign(0.183) TCGA-CV-7568-01 12 53453557 53453557 G A TENC1 Missense_Mutation p.R721K 0.33 deleterious(0.03) probably_damaging(0.992) TCGA-CV-7568-01 12 53453558 53453558 G A TENC1 Silent p.R721R 0.33 TCGA-CV-7568-01 12 53681818 53681818 G A ESPL1 Silent p.E1413E 0.41 TCGA-CV-7568-01 12 53910855 53910855 G T ATF7 3'UTR 0.46 TCGA-CV-7568-01 12 54795370 54795370 C T ITGA5 Missense_Mutation p.G796S 0.39 deleterious(0) probably_damaging(0.957) TCGA-CV-7568-01 12 54917272 54917272 G A NCKAP1L Missense_Mutation p.R658K 0.43 tolerated(0.93) benign(0.008) TCGA-CV-7568-01 12 55039040 55039040 C T DCD Missense_Mutation p.G69D 0.36 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-CV-7568-01 12 55039041 55039041 C T DCD Missense_Mutation p.G69S 0.35 tolerated_low_confidence(0.23) probably_damaging(0.931) TCGA-CV-7568-01 12 55524117 55524117 T A OR9K2 Missense_Mutation p.F189I 0.45 deleterious(0.03) possibly_damaging(0.589) TCGA-CV-7568-01 12 55794384 55794384 G A OR6C65 Silent p.V24V 0.62 TCGA-CV-7568-01 12 55863154 55863154 A T OR6C70 Missense_Mutation p.Y257N 0.47 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CV-7568-01 12 56078980 56078980 C T ITGA7 Silent p.K1096K 0.30 TCGA-CV-7568-01 12 56109934 56109934 C T BLOC1S1 Silent p.L33L 0.18 TCGA-CV-7568-01 12 56428581 56428581 C T IKZF4 Silent p.P408P 0.41 TCGA-CV-7568-01 12 56428794 56428794 C T IKZF4 Silent p.P479P 0.33 TCGA-CV-7568-01 12 56491581 56491581 C T ERBB3 Missense_Mutation p.L825F 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 56721345 56721345 T C PAN2 Missense_Mutation p.D241G 0.37 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 12 5674823 5674823 C T ANO2 Silent p.K876K 0.43 TCGA-CV-7568-01 12 57112046 57112046 G A NACA Intron 0.38 TCGA-CV-7568-01 12 57324258 57324258 G A SDR9C7 Silent p.A104A 0.36 TCGA-CV-7568-01 12 57464648 57464648 C T TMEM194A Missense_Mutation p.R94Q 0.33 tolerated(0.13) benign(0.003) TCGA-CV-7568-01 12 57606240 57606240 G C LRP1 Missense_Mutation p.G4513R 0.25 probably_damaging(0.911) TCGA-CV-7568-01 12 57606241 57606241 G A LRP1 Missense_Mutation p.G4513E 0.28 possibly_damaging(0.719) TCGA-CV-7568-01 12 5842044 5842044 C T ANO2 Splice_Site p.X475_splice 0.39 TCGA-CV-7568-01 12 6120860 6120860 C T VWF Missense_Mutation p.G1922E 0.47 deleterious(0.04) probably_damaging(0.972) TCGA-CV-7568-01 12 6167113 6167113 G A VWF Missense_Mutation p.P544L 0.26 tolerated(0.09) possibly_damaging(0.549) TCGA-CV-7568-01 12 6167114 6167114 G A VWF Missense_Mutation p.P544S 0.27 tolerated(0.3) benign(0.041) TCGA-CV-7568-01 12 62147517 62147517 C T FAM19A2 Silent p.V90V 0.82 TCGA-CV-7568-01 12 6752731 6752731 C T ACRBP Missense_Mutation p.E351K 0.38 tolerated(0.06) benign(0.079) TCGA-CV-7568-01 12 6776966 6776966 G A ZNF384 Missense_Mutation p.P550S 0.39 tolerated(0.3) possibly_damaging(0.641) TCGA-CV-7568-01 12 68052290 68052290 C T DYRK2 Silent p.L535L 0.78 TCGA-CV-7568-01 12 68716966 68716966 G A MDM1 Missense_Mutation p.H230Y 0.29 tolerated(0.12) probably_damaging(0.92) TCGA-CV-7568-01 12 70004470 70004470 G A LRRC10 Missense_Mutation p.S50F 0.30 deleterious(0.01) benign(0.352) TCGA-CV-7568-01 12 7064398 7064398 G A PTPN6 Missense_Mutation p.E201K 0.43 deleterious(0.01) benign(0.406) TCGA-CV-7568-01 12 70928290 70928290 C A PTPRB Missense_Mutation p.G2116W 0.13 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 12 7286260 7286260 C T CLSTN3 Silent p.A93A 0.34 TCGA-CV-7568-01 12 7633840 7633840 C T CD163 Missense_Mutation p.G1087E 0.38 tolerated(0.29) benign(0.132) TCGA-CV-7568-01 12 7654044 7654044 C T CD163 Missense_Mutation p.E50K 0.43 tolerated(0.05) benign(0.018) TCGA-CV-7568-01 12 76881335 76881335 G A OSBPL8 5'UTR 0.59 TCGA-CV-7568-01 12 78400818 78400818 C T NAV3 Silent p.S500S 0.79 TCGA-CV-7568-01 12 81110921 81110921 G A MYF5 Missense_Mutation p.E27K 0.36 tolerated(0.37) benign(0.226) TCGA-CV-7568-01 12 8212283 8212283 C T C3AR1 Missense_Mutation p.D167N 0.35 tolerated(0.22) benign(0.037) TCGA-CV-7568-01 12 8628756 8628756 T C CLEC6A Silent p.S135S 0.42 TCGA-CV-7568-01 12 88440660 88440660 G A C12orf29 Silent p.L232L 0.81 TCGA-CV-7568-01 12 9246163 9246163 A T A2M Missense_Mutation p.M713K 0.39 tolerated(0.38) benign(0) TCGA-CV-7568-01 12 96640976 96640976 G A ELK3 Missense_Mutation p.D156N 0.78 tolerated(0.1) benign(0.031) TCGA-CV-7568-01 12 98849634 98849634 C T SLC9A7P1 RNA 0.87 TCGA-CV-7568-01 13 100181843 100181843 T A TM9SF2 Missense_Mutation p.H152Q 0.31 tolerated(0.22) probably_damaging(0.965) TCGA-CV-7568-01 13 100622742 100622742 G A ZIC5 Silent p.L396L 0.33 TCGA-CV-7568-01 13 107822742 107822742 T C FAM155A 3'UTR 0.36 TCGA-CV-7568-01 13 109792740 109792740 G A MYO16 Missense_Mutation p.G1372R 0.62 deleterious_low_confidence(0.02) benign(0.014) TCGA-CV-7568-01 13 110831733 110831733 A G COL4A1 Silent p.G743G 0.33 TCGA-CV-7568-01 13 111138077 111138077 G A COL4A2 Missense_Mutation p.G1034E 0.34 possibly_damaging(0.887) TCGA-CV-7568-01 13 111290823 111290823 C T CARKD Silent p.L376L 0.28 TCGA-CV-7568-01 13 114292093 114292093 C G TFDP1 Intron 0.38 TCGA-CV-7568-01 13 114294439 114294439 C T TFDP1 Silent p.L364L 0.40 TCGA-CV-7568-01 13 19751273 19751273 C T TUBA3C Missense_Mutation p.E284K 0.33 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-CV-7568-01 13 19997151 19997151 G A TPTE2 3'UTR 0.38 TCGA-CV-7568-01 13 20425891 20425891 G A ZMYM5 Missense_Mutation p.P144S 0.35 deleterious_low_confidence(0.03) benign(0.001) TCGA-CV-7568-01 13 21565462 21565462 G A LATS2 Silent p.L142L 0.31 TCGA-CV-7568-01 13 21565463 21565463 G A LATS2 Silent p.Y141Y 0.32 TCGA-CV-7568-01 13 24466137 24466137 C T C1QTNF9B Missense_Mutation p.G98E 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 13 25064876 25064876 T C PARP4 Missense_Mutation p.I382V 0.38 tolerated(0.11) probably_damaging(0.928) TCGA-CV-7568-01 13 26787832 26787832 G A RNF6 3'UTR 0.38 TCGA-CV-7568-01 13 26793792 26793792 G A RNF6 5'UTR 0.44 TCGA-CV-7568-01 13 28562674 28562674 G A URAD Missense_Mutation p.S34F 0.34 deleterious(0) probably_damaging(0.985) TCGA-CV-7568-01 13 29001405 29001405 G A FLT1 Missense_Mutation p.L443F 0.37 deleterious(0.03) probably_damaging(0.968) TCGA-CV-7568-01 13 29599806 29599806 G A MTUS2 Missense_Mutation p.G334E 0.37 tolerated(1) benign(0.037) TCGA-CV-7568-01 13 29898813 29898813 G A MTUS2 Missense_Mutation p.R967K 0.33 tolerated(0.12) benign(0.103) TCGA-CV-7568-01 13 30098369 30098369 G A SLC7A1 Silent p.P242P 0.40 TCGA-CV-7568-01 13 30098370 30098370 G A SLC7A1 Missense_Mutation p.P242L 0.37 tolerated(1) benign(0.001) TCGA-CV-7568-01 13 32366042 32366042 C G RXFP2 Missense_Mutation p.N415K 0.39 deleterious(0) possibly_damaging(0.574) TCGA-CV-7568-01 13 32367008 32367008 C T RXFP2 Silent p.V523V 0.42 TCGA-CV-7568-01 13 33315221 33315221 C T PDS5B Missense_Mutation p.P804S 0.33 tolerated(0.35) benign(0.057) TCGA-CV-7568-01 13 37679102 37679102 C T CSNK1A1L Missense_Mutation p.E98K 0.39 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-CV-7568-01 13 39263623 39263623 G A FREM2 Silent p.Q714Q 0.36 TCGA-CV-7568-01 13 39266048 39266048 C T FREM2 Missense_Mutation p.R1523C 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-CV-7568-01 13 41705881 41705881 G A KBTBD6 Missense_Mutation p.P256L 0.30 tolerated(0.09) possibly_damaging(0.9) TCGA-CV-7568-01 13 41705882 41705882 G A KBTBD6 Missense_Mutation p.P256S 0.29 tolerated(0.24) benign(0.304) TCGA-CV-7568-01 13 45768780 45768780 C T KCTD4 5'UTR 0.41 TCGA-CV-7568-01 13 50102819 50102819 G A PHF11 3'UTR 0.31 TCGA-CV-7568-01 13 50123614 50123614 G A RCBTB1 Missense_Mutation p.S342L 0.60 tolerated(0.05) benign(0.006) TCGA-CV-7568-01 13 52603485 52603485 C T UTP14C Missense_Mutation p.P182L 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-CV-7568-01 13 67799718 67799718 G A PCDH9 Missense_Mutation p.P952L 0.33 deleterious(0) possibly_damaging(0.861) TCGA-CV-7568-01 13 67799719 67799719 G A PCDH9 Missense_Mutation p.P952S 0.33 deleterious(0) possibly_damaging(0.861) TCGA-CV-7568-01 13 67800481 67800481 C T PCDH9 Missense_Mutation p.A698T 0.39 tolerated(0.71) benign(0.145) TCGA-CV-7568-01 13 67800937 67800937 C T PCDH9 Missense_Mutation p.D546N 0.36 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 13 72014684 72014684 G A DACH1 3'UTR 0.32 TCGA-CV-7568-01 13 72256016 72256016 C T DACH1 Missense_Mutation p.R294K 0.48 probably_damaging(0.954) TCGA-CV-7568-01 13 76395330 76395330 A C LMO7 Missense_Mutation p.K509T 0.42 tolerated(0.56) benign(0.001) TCGA-CV-7568-01 13 78335218 78335218 G A SLAIN1 Missense_Mutation p.R393Q 0.27 deleterious(0) possibly_damaging(0.776) TCGA-CV-7568-01 13 79951531 79951531 C T RBM26 Missense_Mutation p.D104N 0.33 deleterious(0.02) unknown(0) TCGA-CV-7568-01 13 86368629 86368629 C T SLITRK6 Missense_Mutation p.R672K 0.36 tolerated(0.22) benign(0.164) TCGA-CV-7568-01 13 86368630 86368630 T A SLITRK6 Nonsense_Mutation p.R672* 0.36 TCGA-CV-7568-01 13 86370632 86370632 C T SLITRK6 Nonsense_Mutation p.W4* 0.33 TCGA-CV-7568-01 13 88327801 88327801 C T SLITRK5 Missense_Mutation p.P53L 0.35 tolerated(0.66) benign(0.004) TCGA-CV-7568-01 13 94938602 94938602 G A GPC6 Splice_Site p.X293_splice 0.29 TCGA-CV-7568-01 13 95813448 95813448 G A ABCC4 Missense_Mutation p.P817L 0.30 deleterious(0) probably_damaging(0.941) TCGA-CV-7568-01 13 95813449 95813449 G A ABCC4 Missense_Mutation p.P817S 0.31 tolerated(0.09) probably_damaging(0.913) TCGA-CV-7568-01 13 96416176 96416176 G A DNAJC3 Silent p.E348E 0.36 TCGA-CV-7568-01 13 98865605 98865605 G A FARP1 Missense_Mutation p.G37R 0.35 tolerated(0.11) possibly_damaging(0.766) TCGA-CV-7568-01 13 99043110 99043110 G A FARP1 Missense_Mutation p.G355E 0.40 tolerated(0.33) benign(0.005) TCGA-CV-7568-01 13 99064191 99064191 C T FARP1 Missense_Mutation p.P577S 0.28 deleterious(0.04) probably_damaging(0.934) TCGA-CV-7568-01 13 99064192 99064192 C T FARP1 Missense_Mutation p.P577L 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-CV-7568-01 14 100795098 100795098 C T SLC25A47 Silent p.V121V 0.38 TCGA-CV-7568-01 14 100826920 100826920 G A WARS Silent p.F131F 0.34 TCGA-CV-7568-01 14 102792613 102792613 C T ZNF839 Missense_Mutation p.P194S 0.31 tolerated(0.66) benign(0.02) TCGA-CV-7568-01 14 103369698 103369698 C T TRAF3 Missense_Mutation p.S356F 0.36 deleterious(0.01) possibly_damaging(0.492) TCGA-CV-7568-01 14 103369699 103369699 C T TRAF3 Silent p.S356S 0.34 TCGA-CV-7568-01 14 104638927 104638927 G A KIF26A Missense_Mutation p.G448R 0.38 deleterious(0) possibly_damaging(0.635) TCGA-CV-7568-01 14 105063389 105063389 G C TMEM179 Missense_Mutation p.I127M 0.56 tolerated(0.34) benign(0.119) TCGA-CV-7568-01 14 105353151 105353151 C T CEP170B Missense_Mutation p.P859S 0.40 tolerated(0.4) benign(0.008) TCGA-CV-7568-01 14 105395239 105395239 C A PLD4 Missense_Mutation p.D146E 0.30 deleterious(0) possibly_damaging(0.786) TCGA-CV-7568-01 14 105418941 105418941 C T AHNAK2 Silent p.K949K 0.34 TCGA-CV-7568-01 14 105452938 105452938 C T C14orf79 Missense_Mutation p.P57L 0.32 tolerated(0.8) benign(0.001) TCGA-CV-7568-01 14 105452939 105452939 C T C14orf79 Silent p.P57P 0.30 TCGA-CV-7568-01 14 105612755 105612755 G A JAG2 Silent p.C892C 0.33 TCGA-CV-7568-01 14 106054673 106054673 C T IGHA2 Silent p.G20G 0.41 TCGA-CV-7568-01 14 106321105 106321105 C A IGHM Missense_Mutation p.W295L 0.35 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 14 106641986 106641986 G A IGHV1-18 Silent p.T4T 0.36 TCGA-CV-7568-01 14 106668031 106668031 C T IGHV3-20 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0.01) benign(0.308) TCGA-CV-7568-01 14 107048710 107048710 G A IGHV3-53 Silent p.L104L 0.44 TCGA-CV-7568-01 14 107048711 107048711 G A IGHV3-53 Silent p.S103S 0.45 TCGA-CV-7568-01 14 107083436 107083436 G A IGHV4-59 Silent p.I56I 0.40 TCGA-CV-7568-01 14 20404104 20404104 C T OR4K1 Silent p.S93S 0.31 TCGA-CV-7568-01 14 20404411 20404411 G A OR4K1 Missense_Mutation p.E196K 0.40 deleterious(0.04) possibly_damaging(0.626) TCGA-CV-7568-01 14 20444383 20444383 C T OR4K15 Missense_Mutation p.L236F 0.42 tolerated(0.27) benign(0.013) TCGA-CV-7568-01 14 20665863 20665863 C T OR11G2 Silent p.F123F 0.42 TCGA-CV-7568-01 14 21623849 21623849 G A OR5AU1 Silent p.S112S 0.38 TCGA-CV-7568-01 14 22005080 22005080 G A SALL2 5'UTR 0.28 TCGA-CV-7568-01 14 22237280 22237280 C T TRAV6 Silent p.S119S 0.31 TCGA-CV-7568-01 14 22265623 22265623 G A TRAV8-1 Missense_Mutation p.M11I 0.27 tolerated(0.86) benign(0.003) TCGA-CV-7568-01 14 22280041 22280041 G A TRAV9-1 Missense_Mutation p.R77K 0.39 tolerated(0.43) benign(0.005) TCGA-CV-7568-01 14 22280042 22280042 G A TRAV9-1 Silent p.R77R 0.39 TCGA-CV-7568-01 14 22321084 22321084 G A TRAV8-3 Missense_Mutation p.G81D 0.38 deleterious(0.03) benign(0.159) TCGA-CV-7568-01 14 22356114 22356114 C T TRAV12-2 5'UTR 0.37 TCGA-CV-7568-01 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.37 tolerated_low_confidence(0.11) benign(0.004) TCGA-CV-7568-01 14 23237204 23237204 C T OXA1L Missense_Mutation p.P148L 0.33 deleterious(0.03) possibly_damaging(0.869) TCGA-CV-7568-01 14 23745163 23745163 G A HOMEZ Missense_Mutation p.P425L 0.33 tolerated(0.16) benign(0.015) TCGA-CV-7568-01 14 23846500 23846500 G A CMTM5 Missense_Mutation p.E14K 0.41 deleterious(0.03) benign(0.138) TCGA-CV-7568-01 14 23848307 23848307 G A CMTM5 Missense_Mutation p.R116Q 0.38 tolerated(0.24) probably_damaging(0.968) TCGA-CV-7568-01 14 23848308 23848308 G A CMTM5 Silent p.R116R 0.37 TCGA-CV-7568-01 14 23944467 23944467 G A NGDN Missense_Mutation p.G78R 0.40 tolerated(0.65) benign(0.01) TCGA-CV-7568-01 14 24884423 24884423 C T NYNRIN Silent p.S1156S 0.31 TCGA-CV-7568-01 14 32563456 32563456 G A ARHGAP5 Missense_Mutation p.G1194E 0.43 tolerated(0.13) possibly_damaging(0.873) TCGA-CV-7568-01 14 39647066 39647066 G T PNN Missense_Mutation p.L148F 0.35 deleterious(0.03) probably_damaging(0.952) TCGA-CV-7568-01 14 44975196 44975196 T A FSCB Missense_Mutation p.E332V 0.37 deleterious(0) possibly_damaging(0.607) TCGA-CV-7568-01 14 50360405 50360405 G T ARF6 5'UTR 0.37 TCGA-CV-7568-01 14 53184987 53184987 G A PSMC6 Missense_Mutation p.S225N 0.44 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 14 55818703 55818703 T C FBXO34 Missense_Mutation p.V532A 0.36 tolerated(1) benign(0.001) TCGA-CV-7568-01 14 55836251 55836251 C T ATG14 3'UTR 0.33 TCGA-CV-7568-01 14 55848745 55848745 G A ATG14 Missense_Mutation p.P271L 0.34 deleterious(0) probably_damaging(0.911) TCGA-CV-7568-01 14 57676316 57676316 G A EXOC5 Missense_Mutation p.A636V 0.32 deleterious(0) benign(0.405) TCGA-CV-7568-01 14 58063613 58063613 C T SLC35F4 Translation_Start_Site p.M1? 0.41 benign(0) TCGA-CV-7568-01 14 58917345 58917345 C T KIAA0586 Missense_Mutation p.P390L 0.33 deleterious(0) probably_damaging(0.964) TCGA-CV-7568-01 14 59113391 59113391 G A DACT1 Missense_Mutation p.E684K 0.32 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 14 60076892 60076892 G A RTN1 Intron 0.60 TCGA-CV-7568-01 14 63269170 63269170 G A KCNH5 Nonsense_Mutation p.Q567* 0.32 TCGA-CV-7568-01 14 63269171 63269171 G A KCNH5 Silent p.F566F 0.32 TCGA-CV-7568-01 14 64165303 64165303 C T SGPP1 Missense_Mutation p.G253E 0.44 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 14 64421611 64421611 C T SYNE2 Silent p.I255I 0.38 TCGA-CV-7568-01 14 64727453 64727453 C T ESR2 Silent p.E222E 0.42 TCGA-CV-7568-01 14 68944413 68944413 G A RAD51B Intron 0.33 TCGA-CV-7568-01 14 69343912 69343912 G T ACTN1 Missense_Mutation p.R825S 0.28 tolerated(0.31) benign(0.012) TCGA-CV-7568-01 14 69707882 69707882 C T EXD2 3'UTR 0.42 TCGA-CV-7568-01 14 70713044 70713044 G A ADAM21P1 RNA 0.39 TCGA-CV-7568-01 14 70713045 70713045 G A ADAM21P1 RNA 0.39 TCGA-CV-7568-01 14 70714098 70714098 C T ADAM21P1 RNA 0.25 TCGA-CV-7568-01 14 70924496 70924496 G A ADAM21 Missense_Mutation p.D94N 0.08 deleterious(0.01) benign(0.239) TCGA-CV-7568-01 14 73464926 73464926 G A ZFYVE1 Missense_Mutation p.S194F 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 14 74138254 74138254 G A DNAL1 Missense_Mutation p.R73K 0.30 tolerated(1) benign(0.001) TCGA-CV-7568-01 14 74516716 74516716 C T CCDC176 Silent p.H368H 0.45 TCGA-CV-7568-01 14 74516717 74516717 C T CCDC176 Nonsense_Mutation p.Q369* 0.42 TCGA-CV-7568-01 14 74824516 74824518 CGC TG VRTN Frame_Shift_Del p.R344Cfs*31 0.26 TCGA-CV-7568-01 14 74825001 74825001 C T VRTN Silent p.S505S 0.49 TCGA-CV-7568-01 14 74825106 74825106 C T VRTN Silent p.A540A 0.33 TCGA-CV-7568-01 14 74995355 74995355 C T LTBP2 Silent p.A733A 0.35 TCGA-CV-7568-01 14 75348709 75348709 C T DLST Missense_Mutation p.A18V 0.50 tolerated(0.17) benign(0.023) TCGA-CV-7568-01 14 75348710 75348710 C T DLST Silent p.A18A 0.50 TCGA-CV-7568-01 14 75475786 75475786 C T EIF2B2 Silent p.P317P 0.36 TCGA-CV-7568-01 14 76245981 76245981 C T TTLL5 Silent p.F817F 0.35 TCGA-CV-7568-01 14 77239592 77239592 C T VASH1 Intron 0.26 TCGA-CV-7568-01 14 77270233 77270233 G A ANGEL1 Missense_Mutation p.S468F 0.35 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 14 77812759 77812759 G T TMED8 Missense_Mutation p.P87H 0.30 deleterious(0.01) benign(0.109) TCGA-CV-7568-01 14 77812760 77812760 G A TMED8 Missense_Mutation p.P87S 0.29 tolerated(0.41) benign(0.003) TCGA-CV-7568-01 14 77812778 77812778 G T TMED8 Missense_Mutation p.L81M 0.35 tolerated_low_confidence(0.1) benign(0.429) TCGA-CV-7568-01 14 77942412 77942412 G A ISM2 Silent p.F414F 0.40 TCGA-CV-7568-01 14 78390908 78390908 G A ADCK1 Missense_Mutation p.G323R 0.40 tolerated(0.06) benign(0.064) TCGA-CV-7568-01 14 89628854 89628854 G A FOXN3 Silent p.S459S 0.40 TCGA-CV-7568-01 14 89628855 89628855 G A FOXN3 Missense_Mutation p.S459F 0.40 deleterious(0) possibly_damaging(0.707) TCGA-CV-7568-01 14 90485694 90485694 G A TDP1 Missense_Mutation p.E526K 0.25 deleterious(0.02) probably_damaging(0.941) TCGA-CV-7568-01 14 90650549 90650549 C G KCNK13 Missense_Mutation p.N143K 0.38 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 14 92625555 92625555 G A CPSF2 Missense_Mutation p.G684R 0.41 tolerated(0.4) possibly_damaging(0.558) TCGA-CV-7568-01 14 92949034 92949034 G A SLC24A4 Silent p.G422G 0.40 TCGA-CV-7568-01 14 93673509 93673509 C T UBR7 5'UTR 0.57 TCGA-CV-7568-01 14 94044271 94044271 G A UNC79 Silent p.R588R 0.30 TCGA-CV-7568-01 14 94103625 94103625 G A UNC79 Missense_Mutation p.G1789E 0.34 deleterious_low_confidence(0.02) benign(0.046) TCGA-CV-7568-01 14 94595900 94595900 A G IFI27L2 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-7568-01 14 94849227 94849227 G A SERPINA1 Silent p.I116I 0.34 TCGA-CV-7568-01 14 94962942 94962942 C T SERPINA12 Missense_Mutation p.E225K 0.33 deleterious(0.05) benign(0.124) TCGA-CV-7568-01 14 95562407 95562407 A T DICER1 Missense_Mutation p.L1617H 0.40 tolerated(0.4) benign(0.319) TCGA-CV-7568-01 14 95592951 95592951 G A DICER1 Missense_Mutation p.S290L 0.39 tolerated(0.27) benign(0.013) TCGA-CV-7568-01 14 95670599 95670599 G A CLMN Missense_Mutation p.R363C 0.33 tolerated(0.21) benign(0.001) TCGA-CV-7568-01 14 96134469 96134469 G A TCL6 Intron 0.35 TCGA-CV-7568-01 14 96134470 96134470 G A TCL6 Intron 0.33 TCGA-CV-7568-01 15 22990141 22990141 C T CYFIP1 Missense_Mutation p.L921F 0.45 deleterious(0) probably_damaging(0.911) TCGA-CV-7568-01 15 23812581 23812581 C A MKRN3 3'UTR 0.33 TCGA-CV-7568-01 15 23889507 23889507 C T MAGEL2 Missense_Mutation p.R525K 0.34 tolerated(0.34) benign(0.063) TCGA-CV-7568-01 15 23931733 23931733 C T NDN Nonsense_Mutation p.W211* 0.43 TCGA-CV-7568-01 15 23932305 23932305 G A NDN Silent p.S20S 0.60 TCGA-CV-7568-01 15 23932306 23932306 G A NDN Missense_Mutation p.S20F 0.60 tolerated_low_confidence(0.05) benign(0.188) TCGA-CV-7568-01 15 23932346 23932346 C T NDN Missense_Mutation p.D7N 0.35 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CV-7568-01 15 25442574 25442574 G A SNORD115-14 3'Flank 0.35 TCGA-CV-7568-01 15 25474168 25474168 C T SNORD115-32 RNA 0.38 TCGA-CV-7568-01 15 27017885 27017885 C T GABRB3 Missense_Mutation p.E39K 0.26 tolerated(0.26) benign(0.11) TCGA-CV-7568-01 15 29393813 29393813 G A APBA2 Missense_Mutation p.M450I 0.58 deleterious(0.02) benign(0.34) TCGA-CV-7568-01 15 29393814 29393814 G A APBA2 Missense_Mutation p.D451N 0.62 deleterious(0) probably_damaging(0.967) TCGA-CV-7568-01 15 34542830 34542830 A C SLC12A6 Splice_Site p.X531_splice 0.21 TCGA-CV-7568-01 15 35274541 35274541 G A ZNF770 Silent p.F365F 0.25 TCGA-CV-7568-01 15 39880794 39880794 G A THBS1 Silent p.Q513Q 0.36 TCGA-CV-7568-01 15 40488920 40488920 C T BUB1B Silent p.S411S 0.46 TCGA-CV-7568-01 15 40657438 40657438 G A DISP2 Silent p.E270E 0.34 TCGA-CV-7568-01 15 40660844 40660844 G A DISP2 Nonsense_Mutation p.W844* 0.34 TCGA-CV-7568-01 15 40675103 40675103 G A KNSTRN Missense_Mutation p.D23N 0.35 tolerated_low_confidence(0.1) benign(0.038) TCGA-CV-7568-01 15 40675132 40675132 G A KNSTRN Silent p.R32R 0.46 TCGA-CV-7568-01 15 41348870 41348870 G A INO80 Missense_Mutation p.R674W 0.35 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 15 41476458 41476458 C T EXD1 Missense_Mutation p.D406N 0.34 tolerated_low_confidence(0.16) benign(0.007) TCGA-CV-7568-01 15 41865994 41865994 C T TYRO3 Missense_Mutation p.P755S 0.33 tolerated(0.09) benign(0.394) TCGA-CV-7568-01 15 41865995 41865995 C T TYRO3 Missense_Mutation p.P755L 0.33 tolerated(0.15) benign(0.081) TCGA-CV-7568-01 15 42363026 42363026 G A PLA2G4D Silent p.C644C 0.37 TCGA-CV-7568-01 15 42565657 42565657 C T GANC 5'Flank 0.40 TCGA-CV-7568-01 15 42635341 42635341 G A GANC Missense_Mutation p.G740R 0.29 benign(0.434) TCGA-CV-7568-01 15 42731746 42731746 G A ZNF106 Silent p.T1320T 0.32 TCGA-CV-7568-01 15 43038281 43038281 C T TTBK2 Silent p.R1149R 0.31 TCGA-CV-7568-01 15 43552363 43552363 G A TGM5 Missense_Mutation p.P108L 0.43 deleterious(0.03) probably_damaging(0.993) TCGA-CV-7568-01 15 43621176 43621176 C T LCMT2 Silent p.V504V 0.39 TCGA-CV-7568-01 15 43820400 43820400 C T MAP1A Silent p.L2243L 0.37 TCGA-CV-7568-01 15 45410265 45410265 G A DUOXA1 Missense_Mutation p.R332C 0.36 deleterious(0.01) benign(0) TCGA-CV-7568-01 15 45436378 45436378 C T DUOX1 Missense_Mutation p.S694F 0.42 deleterious(0) possibly_damaging(0.762) TCGA-CV-7568-01 15 48500321 48500321 C T SLC12A1 Silent p.H135H 0.42 TCGA-CV-7568-01 15 50923674 50923674 G A TRPM7 Missense_Mutation p.H382Y 0.21 deleterious(0.02) benign(0.397) TCGA-CV-7568-01 15 52404618 52404618 G T BCL2L10 Silent p.T102T 0.46 TCGA-CV-7568-01 15 52517151 52517151 T G MYO5C Missense_Mutation p.L1131F 0.46 deleterious(0.03) possibly_damaging(0.771) TCGA-CV-7568-01 15 53809892 53809892 C T WDR72 3'UTR 0.48 TCGA-CV-7568-01 15 54792341 54792341 C T UNC13C Missense_Mutation p.H1709Y 0.38 tolerated_low_confidence(0.07) benign(0.001) TCGA-CV-7568-01 15 54804025 54804025 G A UNC13C Silent p.K1818K 0.55 TCGA-CV-7568-01 15 54804026 54804026 G A UNC13C Missense_Mutation p.E1819K 0.55 tolerated_low_confidence(0.18) benign(0.437) TCGA-CV-7568-01 15 58471324 58471324 C T AQP9 Intron 0.38 TCGA-CV-7568-01 15 58913713 58913713 G A ADAM10 Missense_Mutation p.P490S 0.45 tolerated(1) benign(0.009) TCGA-CV-7568-01 15 59359174 59359174 C T RNF111 Silent p.V526V 0.39 TCGA-CV-7568-01 15 62978840 62978840 G A TLN2 Missense_Mutation p.E320K 0.47 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 15 64669077 64669077 G A KIAA0101 Missense_Mutation p.P52L 0.35 deleterious(0) probably_damaging(0.978) TCGA-CV-7568-01 15 65297257 65297257 G A MTFMT Nonsense_Mutation p.Q304* 0.50 TCGA-CV-7568-01 15 65551717 65551717 G A PARP16 3'UTR 0.31 TCGA-CV-7568-01 15 65551718 65551718 G A PARP16 3'UTR 0.31 TCGA-CV-7568-01 15 65667545 65667545 T G IGDCC3 Missense_Mutation p.H100P 0.33 tolerated(0.05) benign(0.044) TCGA-CV-7568-01 15 66257437 66257437 G A MEGF11 Silent p.F307F 0.40 TCGA-CV-7568-01 15 66787717 66787717 C T SNAPC5 Missense_Mutation p.R44K 0.37 tolerated_low_confidence(0.41) benign(0.025) TCGA-CV-7568-01 15 67555493 67555493 C T IQCH Nonsense_Mutation p.Q70* 0.42 TCGA-CV-7568-01 15 67835590 67835590 C T MAP2K5 5'UTR 0.53 TCGA-CV-7568-01 15 68624319 68624319 G A ITGA11 Nonsense_Mutation p.R550* 0.42 TCGA-CV-7568-01 15 70358436 70358436 C T TLE3 Missense_Mutation p.G165E 0.32 deleterious(0.02) probably_damaging(1) TCGA-CV-7568-01 15 71329518 71329518 G A LRRC49 Silent p.R573R 0.34 TCGA-CV-7568-01 15 72191138 72191138 C T MYO9A Missense_Mutation p.E1236K 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.857) TCGA-CV-7568-01 15 72690714 72690714 T C TMEM202 Missense_Mutation p.V16A 0.30 tolerated(0.19) benign(0.041) TCGA-CV-7568-01 15 72691193 72691193 G A TMEM202 Missense_Mutation p.G94E 0.37 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 15 74032482 74032482 C T C15orf59 Missense_Mutation p.E220K 0.38 tolerated(0.24) benign(0.05) TCGA-CV-7568-01 15 74467469 74467469 C T ISLR Silent p.A90A 0.36 TCGA-CV-7568-01 15 74536395 74536395 C T CCDC33 Missense_Mutation p.P31S 0.48 tolerated(0.08) probably_damaging(0.932) TCGA-CV-7568-01 15 74631110 74631110 C T CYP11A1 Splice_Site p.X413_splice 0.44 TCGA-CV-7568-01 15 74636150 74636150 C T CYP11A1 Nonsense_Mutation p.W270* 0.41 TCGA-CV-7568-01 15 74702887 74702887 G A SEMA7A 3'UTR 0.31 TCGA-CV-7568-01 15 75499396 75499396 C T C15orf39 Missense_Mutation p.P336L 0.28 deleterious(0) possibly_damaging(0.851) TCGA-CV-7568-01 15 75594981 75594981 C A DNM1P34 RNA 0.47 TCGA-CV-7568-01 15 75693073 75693073 C T SIN3A Missense_Mutation p.E579K 0.36 deleterious(0.02) possibly_damaging(0.686) TCGA-CV-7568-01 15 75979625 75979625 G A CSPG4 Nonsense_Mutation p.Q1261* 0.46 TCGA-CV-7568-01 15 75981041 75981041 G A CSPG4 Silent p.L789L 0.44 TCGA-CV-7568-01 15 76254278 76254278 C T NRG4 Missense_Mutation p.V48I 0.36 tolerated(0.33) benign(0.027) TCGA-CV-7568-01 15 77473953 77473953 G A PEAK1 Nonsense_Mutation p.R106* 0.39 TCGA-CV-7568-01 15 78208921 78208921 C T RP11-114H24.7 RNA 0.28 TCGA-CV-7568-01 15 79749050 79749050 C T KIAA1024 Silent p.N187N 0.33 TCGA-CV-7568-01 15 79749651 79749651 C T KIAA1024 Missense_Mutation p.P388S 0.37 tolerated(0.08) possibly_damaging(0.662) TCGA-CV-7568-01 15 80429936 80429936 C T ZFAND6 Missense_Mutation p.P198L 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 15 80465430 80465430 C T FAH Missense_Mutation p.P261S 0.38 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 15 83334306 83334306 C T AP3B2 Missense_Mutation p.G625D 0.37 deleterious(0) probably_damaging(0.927) TCGA-CV-7568-01 15 85147360 85147360 G A ZSCAN2 Missense_Mutation p.E68K 0.36 deleterious(0.01) benign(0.085) TCGA-CV-7568-01 15 85345185 85345185 C T ZNF592 Missense_Mutation p.S1122F 0.40 deleterious(0.01) possibly_damaging(0.724) TCGA-CV-7568-01 15 89453137 89453137 G A MFGE8 Missense_Mutation p.P31S 0.30 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 15 90286698 90286698 G A WDR93 3'UTR 0.44 TCGA-CV-7568-01 15 90892082 90892082 C T GABARAPL3 Silent p.G116G 0.17 TCGA-CV-7568-01 15 90892083 90892083 C T GABARAPL3 Missense_Mutation p.G116E 0.17 deleterious(0.02) possibly_damaging(0.751) TCGA-CV-7568-01 15 91308595 91308595 C T BLM Missense_Mutation p.P715L 0.47 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 15 91448716 91448716 G A MAN2A2 Missense_Mutation p.R123Q 0.44 tolerated(0.65) benign(0.001) TCGA-CV-7568-01 15 91490132 91490132 C T UNC45A Silent p.I496I 0.27 TCGA-CV-7568-01 15 91835849 91835849 C T SV2B 3'UTR 0.36 TCGA-CV-7568-01 15 93162622 93162622 C T FAM174B 3'UTR 0.41 TCGA-CV-7568-01 15 93486190 93486190 C G CHD2 Missense_Mutation p.S315C 0.42 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 15 99456351 99456351 C T IGF1R Silent p.L556L 0.48 TCGA-CV-7568-01 15 99671501 99671501 C T SYNM Missense_Mutation p.P978L 0.19 tolerated(0.11) benign(0.06) TCGA-CV-7568-01 16 11000703 11000703 C T CIITA Missense_Mutation p.P452S 0.35 deleterious(0.04) possibly_damaging(0.867) TCGA-CV-7568-01 16 11000927 11000927 G A CIITA Silent p.R526R 0.39 TCGA-CV-7568-01 16 11001378 11001378 G A CIITA Missense_Mutation p.E677K 0.37 tolerated(0.17) benign(0.013) TCGA-CV-7568-01 16 11118684 11118684 C T CLEC16A Silent p.F481F 0.36 TCGA-CV-7568-01 16 11845266 11845266 C T ZC3H7A Silent p.K941K 0.40 TCGA-CV-7568-01 16 14014015 14014015 G A ERCC4 5'UTR 0.23 TCGA-CV-7568-01 16 14341306 14341306 C T MKL2 Intron 0.31 TCGA-CV-7568-01 16 15134961 15134961 C T NTAN1 Missense_Mutation p.E169K 0.30 tolerated(0.71) benign(0.009) TCGA-CV-7568-01 16 15225223 15225223 G A RP11-1186N24.5 RNA 0.29 TCGA-CV-7568-01 16 15690647 15690647 A C KIAA0430 Missense_Mutation p.L1711R 0.34 tolerated(0.09) benign(0.252) TCGA-CV-7568-01 16 15715622 15715622 G A KIAA0430 Silent p.T869T 0.44 TCGA-CV-7568-01 16 15715623 15715623 G A KIAA0430 Missense_Mutation p.T869I 0.43 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 16 16215871 16215871 G A ABCC1 Missense_Mutation p.E1144K 0.31 deleterious(0) possibly_damaging(0.895) TCGA-CV-7568-01 16 16218717 16218717 C T ABCC1 Missense_Mutation p.S1221F 0.35 deleterious(0.01) benign(0.049) TCGA-CV-7568-01 16 16218718 16218718 C T ABCC1 Silent p.S1221S 0.35 TCGA-CV-7568-01 16 1716089 1716089 G A CRAMP1L Missense_Mutation p.R923Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 16 1716090 1716090 G A CRAMP1L Silent p.R923R 0.31 TCGA-CV-7568-01 16 18841660 18841660 G A SMG1 Nonsense_Mutation p.Q2942* 0.41 TCGA-CV-7568-01 16 18848596 18848596 G A SMG1 Missense_Mutation p.P2528L 0.28 deleterious(0.01) benign(0.002) TCGA-CV-7568-01 16 18848597 18848597 G A SMG1 Missense_Mutation p.P2528S 0.28 tolerated(0.36) benign(0.054) TCGA-CV-7568-01 16 2012973 2012973 G A RPS2 Intron 0.44 TCGA-CV-7568-01 16 2025848 2025848 C T TBL3 Missense_Mutation p.L343F 0.44 tolerated(0.15) benign(0.104) TCGA-CV-7568-01 16 20497933 20497933 G A ACSM2A Missense_Mutation p.G556E 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-CV-7568-01 16 20576154 20576154 C T ACSM2B Missense_Mutation p.R5Q 0.35 tolerated(0.35) benign(0.004) TCGA-CV-7568-01 16 20651842 20651842 C T ACSM1 Missense_Mutation p.E353K 0.42 tolerated(0.1) benign(0.095) TCGA-CV-7568-01 16 21011790 21011790 G A DNAH3 Silent p.F2059F 0.35 TCGA-CV-7568-01 16 21060963 21060963 G A DNAH3 Missense_Mutation p.A1463V 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 16 21213515 21213515 T A ZP2 Silent p.G399G 0.46 TCGA-CV-7568-01 16 21278917 21278917 T G CRYM Missense_Mutation p.I211L 0.48 deleterious(0.02) benign(0.307) TCGA-CV-7568-01 16 21666790 21666790 C T METTL9 3'UTR 0.50 TCGA-CV-7568-01 16 21698771 21698771 G A OTOA Missense_Mutation p.R146Q 0.36 tolerated(0.08) benign(0.18) TCGA-CV-7568-01 16 2201701 2201701 G A RAB26 Nonsense_Mutation p.W118* 0.43 TCGA-CV-7568-01 16 22343422 22343422 G A POLR3E Silent p.R662R 0.41 TCGA-CV-7568-01 16 2256574 2256574 G A MLST8 Silent p.K86K 0.38 TCGA-CV-7568-01 16 2369821 2369821 G A ABCA3 Silent p.L212L 0.35 TCGA-CV-7568-01 16 25263318 25263318 G A ZKSCAN2 Silent p.S239S 0.35 TCGA-CV-7568-01 16 2946540 2946540 G A FLYWCH2 Silent p.P30P 0.39 TCGA-CV-7568-01 16 2979734 2979734 C T FLYWCH1 Silent p.A16A 0.44 TCGA-CV-7568-01 16 29845167 29845167 C T MVP Silent p.F145F 0.46 TCGA-CV-7568-01 16 29853078 29853078 C T MVP Silent p.P451P 0.38 TCGA-CV-7568-01 16 29999288 29999288 C T TAOK2 Missense_Mutation p.P1232L 0.45 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CV-7568-01 16 29999289 29999289 C T TAOK2 Silent p.P1232P 0.41 TCGA-CV-7568-01 16 30364565 30364565 T A CD2BP2 Missense_Mutation p.E284D 0.35 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 16 30376483 30376483 G A TBC1D10B Silent p.A369A 0.39 TCGA-CV-7568-01 16 30532957 30532957 G A ITGAL Missense_Mutation p.D1162N 0.41 tolerated_low_confidence(0.07) benign(0.005) TCGA-CV-7568-01 16 30544332 30544332 G A ZNF747 3'UTR 0.55 TCGA-CV-7568-01 16 30621329 30621329 C T ZNF689 Missense_Mutation p.G12R 0.35 tolerated(0.48) benign(0.301) TCGA-CV-7568-01 16 30747679 30747679 C T SRCAP Silent p.S2296S 0.39 TCGA-CV-7568-01 16 30794800 30794800 G A ZNF629 Silent p.T283T 0.38 TCGA-CV-7568-01 16 31089073 31089073 C T ZNF646 Silent p.H476H 0.50 TCGA-CV-7568-01 16 31089074 31089074 C T ZNF646 Missense_Mutation p.R477W 0.49 deleterious(0) possibly_damaging(0.9) TCGA-CV-7568-01 16 31120611 31120611 C T BCKDK Missense_Mutation p.P23S 0.40 tolerated_low_confidence(0.33) unknown(0) TCGA-CV-7568-01 16 31157262 31157262 G A PRSS36 Missense_Mutation p.P190S 0.56 deleterious(0.04) probably_damaging(0.919) TCGA-CV-7568-01 16 31157264 31157264 A T PRSS36 Missense_Mutation p.L189H 0.55 tolerated(0.53) possibly_damaging(0.886) TCGA-CV-7568-01 16 31332936 31332936 C T ITGAM Missense_Mutation p.R665W 0.39 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 16 3140553 3140553 T G ZSCAN10 Silent p.A239A 0.43 TCGA-CV-7568-01 16 320798 320798 C T RGS11 Missense_Mutation p.E338K 0.29 deleterious(0.03) possibly_damaging(0.872) TCGA-CV-7568-01 16 320993 320993 C T RGS11 Silent p.K323K 0.45 TCGA-CV-7568-01 16 32266287 32266287 C G TP53TG3D 3'UTR 0.27 TCGA-CV-7568-01 16 33647518 33647518 C T RP11-812E19.9 Missense_Mutation p.G28R 0.31 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CV-7568-01 16 3606980 3606980 G A NLRC3 Silent p.S752S 0.44 TCGA-CV-7568-01 16 3781357 3781357 G A CREBBP Missense_Mutation p.L1670F 0.31 unknown(0) TCGA-CV-7568-01 16 3781358 3781358 G A CREBBP Silent p.T1669T 0.31 TCGA-CV-7568-01 16 396184 396184 G A AXIN1 Missense_Mutation p.S281F 0.55 deleterious(0) possibly_damaging(0.498) TCGA-CV-7568-01 16 4867664 4867664 C T GLYR1 Missense_Mutation p.G281R 0.43 deleterious(0) possibly_damaging(0.736) TCGA-CV-7568-01 16 49672020 49672020 G A ZNF423 Missense_Mutation p.P348L 0.61 deleterious_low_confidence(0) possibly_damaging(0.576) TCGA-CV-7568-01 16 53342629 53342629 A G CHD9 Missense_Mutation p.Q2346R 0.50 unknown(0) TCGA-CV-7568-01 16 55846853 55846853 C T CES1 Missense_Mutation p.G350R 0.28 deleterious(0) probably_damaging(0.963) TCGA-CV-7568-01 16 56717159 56717159 C T MT1X Intron 0.57 TCGA-CV-7568-01 16 57486715 57486715 A T COQ9 Missense_Mutation p.Y82F 0.33 tolerated(0.08) benign(0.289) TCGA-CV-7568-01 16 633745 633745 C T PIGQ 3'UTR 0.38 TCGA-CV-7568-01 16 633746 633746 C T PIGQ 3'UTR 0.42 TCGA-CV-7568-01 16 65022213 65022213 G A CDH11 Silent p.V282V 0.32 TCGA-CV-7568-01 16 66426130 66426130 G A CDH5 Missense_Mutation p.G354E 0.38 tolerated(0.16) benign(0.071) TCGA-CV-7568-01 16 66436580 66436580 G A CDH5 Silent p.R621R 0.47 TCGA-CV-7568-01 16 67154023 67154023 C T C16orf70 Silent p.L25L 0.42 TCGA-CV-7568-01 16 67228767 67228767 C T E2F4 Missense_Mutation p.P231L 0.35 tolerated(0.08) benign(0.002) TCGA-CV-7568-01 16 67272172 67272172 C T FHOD1 Silent p.E160E 0.34 TCGA-CV-7568-01 16 67290916 67290916 C T SLC9A5 Missense_Mutation p.A412V 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7568-01 16 67292323 67292323 C T SLC9A5 Silent p.I533I 0.33 TCGA-CV-7568-01 16 67322298 67322298 C T PLEKHG4 Missense_Mutation p.S1150F 0.48 deleterious(0) probably_damaging(0.989) TCGA-CV-7568-01 16 67694198 67694198 G T ACD Missense_Mutation p.L62I 0.44 tolerated_low_confidence(0.11) possibly_damaging(0.636) TCGA-CV-7568-01 16 67700134 67700134 C T ENKD1 Silent p.L40L 0.29 TCGA-CV-7568-01 16 67911499 67911499 G A EDC4 Silent p.E243E 0.38 TCGA-CV-7568-01 16 67911500 67911500 G A EDC4 Missense_Mutation p.E244K 0.37 deleterious(0.01) possibly_damaging(0.524) TCGA-CV-7568-01 16 68055424 68055424 C T DDX28 3'UTR 0.31 TCGA-CV-7568-01 16 68373238 68373238 C T PRMT7 Missense_Mutation p.A173V 0.32 tolerated(0.4) benign(0.007) TCGA-CV-7568-01 16 69377544 69377544 C T TMED6 Splice_Site p.X164_splice 0.33 TCGA-CV-7568-01 16 70817011 70817011 C T VAC14 Missense_Mutation p.E246K 0.36 tolerated(0.4) benign(0.177) TCGA-CV-7568-01 16 71488033 71488033 G A ZNF23 5'UTR 0.39 TCGA-CV-7568-01 16 71736621 71736621 T C PHLPP2 Missense_Mutation p.T100A 0.32 tolerated(0.36) benign(0.001) TCGA-CV-7568-01 16 72111052 72111052 G A HPR 3'UTR 0.21 TCGA-CV-7568-01 16 722105 722105 C T RHOT2 Silent p.V373V 0.36 TCGA-CV-7568-01 16 72822416 72822416 G A ZFHX3 Silent p.P3253P 0.33 TCGA-CV-7568-01 16 72822417 72822417 G A ZFHX3 Missense_Mutation p.P3253L 0.33 unknown(0) TCGA-CV-7568-01 16 731314 731314 G A STUB1 Missense_Mutation p.E108K 0.24 tolerated(0.44) benign(0.174) TCGA-CV-7568-01 16 75563191 75563191 G A CHST5 Silent p.I364I 0.31 TCGA-CV-7568-01 16 77387770 77387770 C T ADAMTS18 Missense_Mutation p.G492R 0.37 tolerated(0.45) benign(0.016) TCGA-CV-7568-01 16 780842 780842 C T NARFL Splice_Site p.X398_splice 0.41 TCGA-CV-7568-01 16 81320958 81320958 G A BCMO1 Nonsense_Mutation p.W454* 0.33 TCGA-CV-7568-01 16 82182459 82182459 G A MPHOSPH6 Silent p.T120T 0.36 TCGA-CV-7568-01 16 83159027 83159027 G A CDH13 Missense_Mutation p.R182K 0.46 deleterious(0) probably_damaging(0.987) TCGA-CV-7568-01 16 84600403 84600403 G T COTL1 3'UTR 0.41 TCGA-CV-7568-01 16 848521 848521 G A GNG13 3'UTR 0.57 TCGA-CV-7568-01 16 848522 848522 G A GNG13 3'UTR 0.62 TCGA-CV-7568-01 16 86565692 86565692 G A MTHFSD Silent p.V359V 0.46 TCGA-CV-7568-01 16 8719511 8719511 G A METTL22 5'UTR 0.33 TCGA-CV-7568-01 16 8719512 8719512 G A METTL22 5'UTR 0.33 TCGA-CV-7568-01 16 88653042 88653042 C T ZC3H18 Missense_Mutation p.P213L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CV-7568-01 16 88908345 88908345 G A GALNS Silent p.I93I 0.50 TCGA-CV-7568-01 16 89702965 89702965 G A DPEP1 Missense_Mutation p.G132E 0.42 tolerated(0.12) possibly_damaging(0.743) TCGA-CV-7568-01 16 89998918 89998918 G A TUBB3 Intron 0.47 TCGA-CV-7568-01 16 90072751 90072751 C T DBNDD1 Missense_Mutation p.E177K 0.55 deleterious_low_confidence(0.04) benign(0.212) TCGA-CV-7568-01 16 90095716 90095716 G A C16orf3 Missense_Mutation p.P12L 0.36 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-CV-7568-01 16 90141417 90141417 G A PRDM7 Nonsense_Mutation p.R70* 0.30 TCGA-CV-7568-01 17 10248557 10248557 C T MYH13 Missense_Mutation p.G516R 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7568-01 17 10304745 10304745 C T MYH8 Missense_Mutation p.M985I 0.38 tolerated(0.07) benign(0.04) TCGA-CV-7568-01 17 10354709 10354709 C T MYH4 Missense_Mutation p.E1267K 0.31 tolerated(0.3) benign(0.155) TCGA-CV-7568-01 17 10401082 10401082 G A MYH1 Missense_Mutation p.A1445V 0.35 tolerated(0.06) benign(0.054) TCGA-CV-7568-01 17 10408142 10408142 T C MYH1 Silent p.Q892Q 0.39 TCGA-CV-7568-01 17 10430364 10430364 G A MYH2 Missense_Mutation p.S1294L 0.37 tolerated(0.19) benign(0.185) TCGA-CV-7568-01 17 10440653 10440653 C T MYH2 Silent p.E598E 0.38 TCGA-CV-7568-01 17 10543053 10543053 C T MYH3 Missense_Mutation p.E917K 0.43 deleterious(0) benign(0.142) TCGA-CV-7568-01 17 10558267 10558267 A G MYH3 Missense_Mutation p.F39L 0.37 deleterious(0) benign(0.158) TCGA-CV-7568-01 17 11520910 11520910 C T DNAH9 Nonsense_Mutation p.Q363* 0.35 TCGA-CV-7568-01 17 1387540 1387540 G A MYO1C Missense_Mutation p.R45W 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 17 1387541 1387541 G A MYO1C Silent p.D44D 0.34 TCGA-CV-7568-01 17 13972847 13972847 G T COX10 5'UTR 0.36 TCGA-CV-7568-01 17 1519990 1519990 C T SLC43A2 Nonsense_Mutation p.W78* 0.37 TCGA-CV-7568-01 17 1519991 1519991 C T SLC43A2 Nonsense_Mutation p.W78* 0.38 TCGA-CV-7568-01 17 15638708 15638708 G A TBC1D26 Missense_Mutation p.G16S 0.43 tolerated(0.1) probably_damaging(0.997) TCGA-CV-7568-01 17 15938100 15938100 C T NCOR1 Missense_Mutation p.E2372K 0.39 probably_damaging(0.991) TCGA-CV-7568-01 17 16699395 16699395 A G CCDC144A 3'UTR 0.18 TCGA-CV-7568-01 17 16699396 16699396 G A CCDC144A 3'UTR 0.21 TCGA-CV-7568-01 17 16699419 16699419 G A CCDC144A 3'UTR 0.18 TCGA-CV-7568-01 17 16703497 16703497 G A CCDC144A 3'UTR 0.19 TCGA-CV-7568-01 17 17163629 17163629 G A COPS3 Nonsense_Mutation p.Q308* 0.38 TCGA-CV-7568-01 17 17696587 17696587 C T RAI1 Missense_Mutation p.P109S 0.50 tolerated(0.29) benign(0.419) TCGA-CV-7568-01 17 17699919 17699919 C T RAI1 Silent p.L1219L 0.32 TCGA-CV-7568-01 17 17701185 17701185 C T RAI1 Silent p.S1641S 0.38 TCGA-CV-7568-01 17 18069767 18069767 C T MYO15A Missense_Mutation p.R3294W 0.44 unknown(0) TCGA-CV-7568-01 17 1840275 1840275 G A RTN4RL1 Missense_Mutation p.P281S 0.21 tolerated(0.61) benign(0.071) TCGA-CV-7568-01 17 18565299 18565299 C T ZNF286B Missense_Mutation p.S507N 0.34 tolerated(0.31) benign(0.03) TCGA-CV-7568-01 17 20209360 20209360 G A SPECC1 Missense_Mutation p.E1028K 0.39 deleterious(0.01) benign(0.292) TCGA-CV-7568-01 17 21731267 21731267 C T UBBP4 Intron 0.37 TCGA-CV-7568-01 17 2239787 2239787 C T TSR1 5'UTR 0.33 TCGA-CV-7568-01 17 263083 263083 C T C17orf97 Missense_Mutation p.T150I 0.36 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-7568-01 17 26653748 26653748 C T TMEM97 Missense_Mutation p.P154S 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-CV-7568-01 17 26861462 26861462 C T FOXN1 Silent p.A347A 0.36 TCGA-CV-7568-01 17 26939672 26939672 C T SGK494 Missense_Mutation p.G171R 0.21 tolerated(0.23) benign(0.165) TCGA-CV-7568-01 17 26964946 26964946 C T KIAA0100 Missense_Mutation p.R560K 0.44 tolerated(0.96) benign(0.002) TCGA-CV-7568-01 17 27240231 27240231 G A PHF12 Missense_Mutation p.P453L 0.40 deleterious(0.01) benign(0.023) TCGA-CV-7568-01 17 27240232 27240232 G A PHF12 Missense_Mutation p.P453S 0.41 tolerated(0.48) benign(0.001) TCGA-CV-7568-01 17 28889931 28889931 C T TBC1D29 Missense_Mutation p.P75S 0.37 tolerated(0.57) probably_damaging(0.932) TCGA-CV-7568-01 17 29324271 29324271 G A RNF135 Missense_Mutation p.E231K 0.41 tolerated(0.06) benign(0.017) TCGA-CV-7568-01 17 29665123 29665123 G A NF1 Missense_Mutation p.G2262E 0.36 tolerated(0.72) benign(0.186) TCGA-CV-7568-01 17 3030838 3030838 C T OR1G1 Missense_Mutation p.G3E 0.74 tolerated(0.82) benign(0) TCGA-CV-7568-01 17 3144155 3144155 C T OR1D4 RNA 0.31 TCGA-CV-7568-01 17 3144156 3144156 C T OR1D4 RNA 0.32 TCGA-CV-7568-01 17 3144401 3144401 C T OR1D4 RNA 0.35 TCGA-CV-7568-01 17 32647334 32647334 G A CCL8 Silent p.R41R 0.36 TCGA-CV-7568-01 17 33269644 33269644 G A CCT6B Silent p.F248F 0.38 TCGA-CV-7568-01 17 33520508 33520508 C T SLC35G3 Silent p.A273A 0.33 TCGA-CV-7568-01 17 34149697 34149697 C T TAF15 Missense_Mutation p.S115L 0.51 deleterious_low_confidence(0) benign(0.307) TCGA-CV-7568-01 17 34964823 34964823 C T MRM1 Missense_Mutation p.P345L 0.29 deleterious_low_confidence(0.04) benign(0) TCGA-CV-7568-01 17 35913449 35913449 G A SYNRG Silent p.S792S 0.35 TCGA-CV-7568-01 17 36482359 36482359 C T GPR179 Missense_Mutation p.D2365N 0.33 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-CV-7568-01 17 36483193 36483193 G A GPR179 Missense_Mutation p.P2087S 0.37 tolerated(0.51) benign(0.004) TCGA-CV-7568-01 17 36487059 36487059 G A GPR179 Missense_Mutation p.A798V 0.36 tolerated(0.14) benign(0.03) TCGA-CV-7568-01 17 37187872 37187872 A G CTD-2206N4.2 5'Flank 0.36 TCGA-CV-7568-01 17 38557239 38557239 G A TOP2A Missense_Mutation p.P843S 0.35 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 17 38640845 38640845 C T TNS4 Silent p.R464R 0.35 TCGA-CV-7568-01 17 38793756 38793756 C T SMARCE1 Silent p.R75R 0.42 TCGA-CV-7568-01 17 38953442 38953442 T C KRT28 Missense_Mutation p.N261S 0.40 tolerated(0.12) benign(0.34) TCGA-CV-7568-01 17 38954593 38954593 C T KRT28 Missense_Mutation p.G195E 0.39 deleterious(0.01) possibly_damaging(0.739) TCGA-CV-7568-01 17 39019386 39019386 C T KRT12 Silent p.G435G 0.36 TCGA-CV-7568-01 17 39023387 39023387 A T KRT12 Missense_Mutation p.S18T 0.26 tolerated(0.07) unknown(0) TCGA-CV-7568-01 17 39596463 39596463 C T KRT38 Silent p.L175L 0.38 TCGA-CV-7568-01 17 39994346 39994346 G A KLHL10 Silent p.K54K 0.38 TCGA-CV-7568-01 17 40091559 40091559 G A TTC25 RNA 0.41 TCGA-CV-7568-01 17 40091560 40091560 G A TTC25 RNA 0.43 TCGA-CV-7568-01 17 40315719 40315719 G A KCNH4 Silent p.S794S 0.31 TCGA-CV-7568-01 17 40452852 40452852 C T STAT5A Missense_Mutation p.A318V 0.42 tolerated(0.08) benign(0.082) TCGA-CV-7568-01 17 4085590 4085590 G A ANKFY1 Silent p.L711L 0.32 TCGA-CV-7568-01 17 40879703 40879703 G A EZH1 Nonsense_Mutation p.Q66* 0.38 TCGA-CV-7568-01 17 41004096 41004096 G A AOC3 Missense_Mutation p.E246K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7568-01 17 41008549 41008549 G A AOC3 Silent p.G758G 0.22 TCGA-CV-7568-01 17 41008550 41008550 G A AOC3 Missense_Mutation p.G759S 0.18 deleterious(0) benign(0.023) TCGA-CV-7568-01 17 41584468 41584468 C T DHX8 Missense_Mutation p.S609F 0.42 tolerated(0.06) benign(0.049) TCGA-CV-7568-01 17 42194945 42194945 G A HDAC5 5'UTR 0.39 TCGA-CV-7568-01 17 42267019 42267019 G A TMUB2 Intron 0.50 TCGA-CV-7568-01 17 42268212 42268212 T A TMUB2 Missense_Mutation p.F316I 0.38 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 17 42336948 42336948 C G SLC4A1 Missense_Mutation p.G204A 0.48 tolerated(0.61) benign(0.005) TCGA-CV-7568-01 17 42457388 42457388 G A ITGA2B Silent p.T578T 0.44 TCGA-CV-7568-01 17 42458336 42458336 G A ITGA2B Missense_Mutation p.S435F 0.28 deleterious(0) probably_damaging(0.92) TCGA-CV-7568-01 17 42477276 42477276 G A GPATCH8 Silent p.A723A 0.39 TCGA-CV-7568-01 17 42756379 42756379 G A CCDC43 Missense_Mutation p.L174F 0.34 tolerated(0.06) benign(0.077) TCGA-CV-7568-01 17 42824479 42824479 C T DBF4B Nonsense_Mutation p.R287* 0.29 TCGA-CV-7568-01 17 43522844 43522844 G A PLEKHM1 Silent p.L943L 0.38 TCGA-CV-7568-01 17 44051777 44051777 G A MAPT Missense_Mutation p.G83R 0.55 tolerated(0.87) benign(0.001) TCGA-CV-7568-01 17 44051778 44051778 G A MAPT Missense_Mutation p.G83E 0.55 tolerated(0.1) benign(0.026) TCGA-CV-7568-01 17 4439592 4439592 C T SPNS2 Missense_Mutation p.S493F 0.28 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 17 4439593 4439593 C T SPNS2 Silent p.S493S 0.27 TCGA-CV-7568-01 17 46148855 46148855 C T CBX1 Missense_Mutation p.R167K 0.39 deleterious(0.04) probably_damaging(0.997) TCGA-CV-7568-01 17 4638418 4638418 C T CXCL16 Silent p.R248R 0.51 TCGA-CV-7568-01 17 46628270 46628270 A C HOXB3 Missense_Mutation p.M241R 0.36 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 17 46655603 46655603 C T HOXB4 Missense_Mutation p.D27N 0.50 tolerated(0.84) benign(0.01) TCGA-CV-7568-01 17 46804277 46804277 C T HOXB13 Missense_Mutation p.D244N 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 17 46972537 46972537 C T ATP5G1 Missense_Mutation p.P46L 0.46 tolerated(0.2) benign(0.003) TCGA-CV-7568-01 17 47780630 47780630 C T SLC35B1 Missense_Mutation p.E228K 0.37 tolerated(0.22) benign(0.026) TCGA-CV-7568-01 17 4923830 4923830 C T KIF1C Silent p.N598N 0.30 TCGA-CV-7568-01 17 4923831 4923831 C T KIF1C Missense_Mutation p.H599Y 0.30 deleterious(0) benign(0.403) TCGA-CV-7568-01 17 49371299 49371299 C T UTP18 Silent p.F513F 0.41 TCGA-CV-7568-01 17 51900837 51900837 C T KIF2B Missense_Mutation p.P148L 0.43 tolerated(0.29) benign(0.393) TCGA-CV-7568-01 17 55027332 55027332 G A COIL Missense_Mutation p.S424F 0.37 tolerated(0.12) possibly_damaging(0.864) TCGA-CV-7568-01 17 56084325 56084326 - A SRSF1 Frame_Shift_Ins p.V59Rfs*2 0.28 TCGA-CV-7568-01 17 56382996 56382996 T A BZRAP1 Nonsense_Mutation p.K1756* 0.31 TCGA-CV-7568-01 17 56386506 56386506 C T BZRAP1 Missense_Mutation p.R1376K 0.50 tolerated(0.76) benign(0.051) TCGA-CV-7568-01 17 56389304 56389304 C T BZRAP1 Missense_Mutation p.E960K 0.43 deleterious(0.02) possibly_damaging(0.764) TCGA-CV-7568-01 17 56448300 56448300 G A RNF43 Missense_Mutation p.P116L 0.32 tolerated(0.31) benign(0.243) TCGA-CV-7568-01 17 56448301 56448301 G A RNF43 Missense_Mutation p.P116S 0.35 deleterious(0.02) possibly_damaging(0.835) TCGA-CV-7568-01 17 56620819 56620819 G A C17orf47 Silent p.V243V 0.35 TCGA-CV-7568-01 17 57290748 57290748 G A SMG8 Missense_Mutation p.R855Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 17 57760370 57760370 T G CLTC Missense_Mutation p.Y1290D 0.42 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 17 58288472 58288472 G A USP32 Missense_Mutation p.P776S 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7568-01 17 58824580 58824580 C T BCAS3 Missense_Mutation p.L115F 0.34 deleterious(0) possibly_damaging(0.798) TCGA-CV-7568-01 17 59479268 59479268 C T TBX2 Missense_Mutation p.H207Y 0.28 deleterious(0) possibly_damaging(0.545) TCGA-CV-7568-01 17 60755897 60755897 G A MRC2 Silent p.K695K 0.35 TCGA-CV-7568-01 17 61949552 61949552 C T CSH2 Missense_Mutation p.M196I 0.42 deleterious(0.03) probably_damaging(0.993) TCGA-CV-7568-01 17 61987974 61987974 G A CSHL1 Intron 0.39 TCGA-CV-7568-01 17 61987975 61987975 G A CSHL1 Intron 0.38 TCGA-CV-7568-01 17 62084044 62084044 G A ICAM2 Missense_Mutation p.S3F 0.35 tolerated(0.23) possibly_damaging(0.587) TCGA-CV-7568-01 17 62232279 62232279 G A TEX2 Silent p.S958S 0.39 TCGA-CV-7568-01 17 62248493 62248493 G A TEX2 Missense_Mutation p.L887F 0.50 deleterious(0) probably_damaging(0.976) TCGA-CV-7568-01 17 62521962 62521962 C T CEP95 Silent p.V328V 0.14 TCGA-CV-7568-01 17 62754416 62754416 C T hsa-mir-6080 RNA 0.36 TCGA-CV-7568-01 17 63533090 63533090 C A AXIN2 Nonsense_Mutation p.G602* 0.39 TCGA-CV-7568-01 17 64785068 64785068 G A PRKCA Missense_Mutation p.E609K 0.45 tolerated(0.26) benign(0.262) TCGA-CV-7568-01 17 65119214 65119214 G A HELZ Missense_Mutation p.L1168F 0.42 deleterious_low_confidence(0.05) benign(0.111) TCGA-CV-7568-01 17 65346399 65346399 G A PSMD12 Silent p.D117D 0.38 TCGA-CV-7568-01 17 65733747 65733747 C T NOL11 Missense_Mutation p.P448S 0.25 tolerated(0.09) possibly_damaging(0.807) TCGA-CV-7568-01 17 65978498 65978498 C T BPTF 3'UTR 0.38 TCGA-CV-7568-01 17 66251959 66251959 C T AMZ2 Missense_Mutation p.P290L 0.38 deleterious(0) probably_damaging(0.926) TCGA-CV-7568-01 17 66381202 66381202 C T ARSG Intron 0.28 TCGA-CV-7568-01 17 66417852 66417852 C T WIPI1 3'UTR 0.34 TCGA-CV-7568-01 17 67016551 67016551 C T ABCA9 Missense_Mutation p.E860K 0.31 deleterious(0.02) possibly_damaging(0.517) TCGA-CV-7568-01 17 68128775 68128775 C T KCNJ16 Missense_Mutation p.R183C 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-CV-7568-01 17 71166355 71166355 C T SSTR2 Silent p.V299V 0.40 TCGA-CV-7568-01 17 7149394 7149394 G A CTDNEP1 Silent p.S180S 0.36 TCGA-CV-7568-01 17 7221174 7221174 G A NEURL4 Missense_Mutation p.H1380Y 0.54 tolerated(1) benign(0) TCGA-CV-7568-01 17 7221175 7221175 G T NEURL4 Silent p.A1379A 0.53 TCGA-CV-7568-01 17 72588512 72588512 G A C17orf77 Silent p.K109K 0.44 TCGA-CV-7568-01 17 72608871 72608871 A C CD300E Missense_Mutation p.L180R 0.39 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 17 72691918 72691918 G A CD300LF Silent p.T221T 0.40 TCGA-CV-7568-01 17 72848616 72848616 G A GRIN2C Silent p.F178F 0.33 TCGA-CV-7568-01 17 73125084 73125084 C T ARMC7 Missense_Mutation p.S183F 0.62 deleterious(0) possibly_damaging(0.522) TCGA-CV-7568-01 17 73230731 73230731 G A NUP85 Splice_Site p.X539_splice 0.32 TCGA-CV-7568-01 17 73282738 73282738 G A SLC25A19 Silent p.F36F 0.39 TCGA-CV-7568-01 17 73565309 73565309 C T LLGL2 Missense_Mutation p.S495F 0.33 deleterious(0.02) benign(0.267) TCGA-CV-7568-01 17 73945810 73945810 G A ACOX1 Silent p.L489L 0.36 TCGA-CV-7568-01 17 74003456 74003456 G A EVPL Missense_Mutation p.L1944F 0.45 deleterious(0.02) probably_damaging(1) TCGA-CV-7568-01 17 74019697 74019697 G A EVPL Silent p.H79H 0.27 TCGA-CV-7568-01 17 74073173 74073173 C T GALR2 Silent p.I275I 0.36 TCGA-CV-7568-01 17 74150231 74150231 G A RNF157 Intron 0.47 TCGA-CV-7568-01 17 74679982 74679982 G A MXRA7 Intron 0.24 TCGA-CV-7568-01 17 74679983 74679983 G A MXRA7 Intron 0.24 TCGA-CV-7568-01 17 75199689 75199689 G A SEC14L1 Missense_Mutation p.M349I 0.25 tolerated(0.07) benign(0.441) TCGA-CV-7568-01 17 75199690 75199690 G A SEC14L1 Missense_Mutation p.D350N 0.25 deleterious(0) probably_damaging(0.979) TCGA-CV-7568-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.81 deleterious(0.03) probably_damaging(1) TCGA-CV-7568-01 17 76200817 76200817 C T AFMID Missense_Mutation p.P130L 0.32 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 17 76202114 76202114 G A AFMID Missense_Mutation p.D295N 0.15 tolerated(0.18) possibly_damaging(0.888) TCGA-CV-7568-01 17 76455995 76455995 C T DNAH17 Missense_Mutation p.G3161E 0.40 benign(0.042) TCGA-CV-7568-01 17 7667304 7667304 G A DNAH2 Missense_Mutation p.G1045E 0.33 benign(0.027) TCGA-CV-7568-01 17 7721167 7721167 G A DNAH2 Missense_Mutation p.G3410E 0.29 possibly_damaging(0.875) TCGA-CV-7568-01 17 7758820 7758820 G A TMEM88 Missense_Mutation p.A90T 0.33 deleterious(0) possibly_damaging(0.908) TCGA-CV-7568-01 17 78165220 78165220 C T CARD14 Silent p.V396V 0.38 TCGA-CV-7568-01 17 78172433 78172433 G A CARD14 Intron 0.40 TCGA-CV-7568-01 17 78197055 78197055 C T SLC26A11 Silent p.F144F 0.39 TCGA-CV-7568-01 17 78899197 78899197 G A RPTOR Missense_Mutation p.G946R 0.38 tolerated(0.07) benign(0.265) TCGA-CV-7568-01 17 78899198 78899198 G A RPTOR Missense_Mutation p.G946E 0.36 tolerated(0.25) benign(0.004) TCGA-CV-7568-01 17 7907313 7907313 C T GUCY2D Missense_Mutation p.P289S 0.75 tolerated(0.08) benign(0.011) TCGA-CV-7568-01 17 7907314 7907314 C T GUCY2D Missense_Mutation p.P289L 0.74 deleterious(0.04) benign(0.129) TCGA-CV-7568-01 17 79655763 79655763 G A HGS Silent p.K107K 0.37 TCGA-CV-7568-01 17 79891054 79891054 G A PYCR1 3'UTR 0.33 TCGA-CV-7568-01 17 80046140 80046140 G A FASN Silent p.T879T 0.47 TCGA-CV-7568-01 17 80332634 80332634 G A UTS2R Missense_Mutation p.S145N 0.43 deleterious(0) probably_damaging(0.991) TCGA-CV-7568-01 17 8398529 8398529 C T MYH10 Missense_Mutation p.E1328K 0.33 possibly_damaging(0.648) TCGA-CV-7568-01 17 8785188 8785188 C T PIK3R5 Missense_Mutation p.S739N 0.36 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 17 8785189 8785189 T G PIK3R5 Missense_Mutation p.S739R 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 17 900371 900371 G A TIMM22 5'UTR 0.37 TCGA-CV-7568-01 17 9536340 9536340 G A WDR16 Missense_Mutation p.G437E 0.49 tolerated(0.1) probably_damaging(0.97) TCGA-CV-7568-01 18 12277312 12277312 C T CIDEA 3'UTR 0.50 TCGA-CV-7568-01 18 12678181 12678181 G A CEP76 Missense_Mutation p.S517F 0.39 deleterious(0.01) possibly_damaging(0.61) TCGA-CV-7568-01 18 13067878 13067878 G A CEP192 Missense_Mutation p.G1513R 0.46 deleterious(0) probably_damaging(0.978) TCGA-CV-7568-01 18 13067879 13067879 G A CEP192 Missense_Mutation p.G1513E 0.46 tolerated(0.06) possibly_damaging(0.449) TCGA-CV-7568-01 18 14478237 14478237 G A CXADRP3 RNA 0.33 TCGA-CV-7568-01 18 14511982 14511982 C T POTEC Missense_Mutation p.S515N 0.34 deleterious_low_confidence(0.02) benign(0.351) TCGA-CV-7568-01 18 14534953 14534953 C T POTEC Silent p.V288V 0.21 TCGA-CV-7568-01 18 21649177 21649177 C A TTC39C Silent p.I134I 0.40 TCGA-CV-7568-01 18 22804787 22804787 G T ZNF521 Missense_Mutation p.T1032N 0.38 tolerated(0.13) probably_damaging(0.997) TCGA-CV-7568-01 18 22806772 22806772 C T ZNF521 Missense_Mutation p.M370I 0.25 tolerated(0.39) benign(0.351) TCGA-CV-7568-01 18 22806824 22806824 G A ZNF521 Missense_Mutation p.S353F 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CV-7568-01 18 24496869 24496869 C T CHST9 Missense_Mutation p.R229K 0.42 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 18 2547411 2547411 C T METTL4 Silent p.K339K 0.39 TCGA-CV-7568-01 18 31324489 31324489 C T ASXL3 Silent p.L1559L 0.42 TCGA-CV-7568-01 18 31324490 31324490 C T ASXL3 Nonsense_Mutation p.R1560* 0.42 TCGA-CV-7568-01 18 34340689 34340689 C T FHOD3 Missense_Mutation p.S1340F 0.39 deleterious(0.03) benign(0.138) TCGA-CV-7568-01 18 44549234 44549234 C T TCEB3CL Silent p.V355V 0.22 TCGA-CV-7568-01 18 44560513 44560513 C T TCEB3B Missense_Mutation p.E375K 0.39 deleterious(0.01) possibly_damaging(0.636) TCGA-CV-7568-01 18 47017948 47017948 A C RPL17 5'UTR 0.36 TCGA-CV-7568-01 18 47527718 47527718 G T MYO5B Silent p.A173A 0.36 TCGA-CV-7568-01 18 50589706 50589706 C T DCC Silent p.N339N 0.42 TCGA-CV-7568-01 18 55020182 55020182 G A ST8SIA3 Silent p.K35K 0.35 TCGA-CV-7568-01 18 55020183 55020183 G A ST8SIA3 Missense_Mutation p.E36K 0.37 benign(0.021) TCGA-CV-7568-01 18 56001072 56001072 T G NEDD4L Missense_Mutation p.L338W 0.22 deleterious(0.04) probably_damaging(0.941) TCGA-CV-7568-01 18 56826011 56826011 G A SEC11C 3'UTR 0.38 TCGA-CV-7568-01 18 56826012 56826012 G A SEC11C 3'UTR 0.33 TCGA-CV-7568-01 18 61233999 61233999 G A SERPINB12 Missense_Mutation p.E325K 0.40 tolerated(0.19) possibly_damaging(0.589) TCGA-CV-7568-01 18 67531477 67531477 G A CD226 3'UTR 0.38 TCGA-CV-7568-01 18 6950940 6950940 G A LAMA1 Silent p.F2746F 0.37 TCGA-CV-7568-01 18 7023295 7023295 G A LAMA1 Missense_Mutation p.P857S 0.37 tolerated(0.41) possibly_damaging(0.677) TCGA-CV-7568-01 18 72250826 72250826 G A CNDP1 Missense_Mutation p.D447N 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7568-01 18 7231424 7231424 C T LRRC30 Silent p.I96I 0.31 TCGA-CV-7568-01 18 72347413 72347413 C T ZNF407 Missense_Mutation p.P1480S 0.45 deleterious(0) probably_damaging(0.981) TCGA-CV-7568-01 18 72347414 72347414 C T ZNF407 Missense_Mutation p.P1480L 0.43 deleterious(0) probably_damaging(0.992) TCGA-CV-7568-01 18 724563 724563 G A YES1 Missense_Mutation p.P498L 0.42 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 18 72999357 72999357 C T TSHZ1 Silent p.S620S 0.36 TCGA-CV-7568-01 18 76752297 76752297 C T SALL3 Silent p.S102S 0.57 TCGA-CV-7568-01 18 76753296 76753296 C T SALL3 Silent p.L435L 0.35 TCGA-CV-7568-01 18 76757421 76757421 C A SALL3 3'Flank 0.45 TCGA-CV-7568-01 18 77134009 77134009 C T ATP9B Missense_Mutation p.T1061I 0.30 deleterious(0.01) possibly_damaging(0.809) TCGA-CV-7568-01 18 77170749 77170749 T A NFATC1 Missense_Mutation p.S145R 0.36 deleterious(0.04) benign(0.104) TCGA-CV-7568-01 18 7888244 7888244 T C PTPRM Silent p.L113L 0.35 TCGA-CV-7568-01 18 9396481 9396481 C T TWSG1 Missense_Mutation p.P143S 0.39 tolerated(0.37) benign(0.023) TCGA-CV-7568-01 19 1047651 1047651 C T ABCA7 Missense_Mutation p.P756L 0.64 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 19 11152077 11152077 C T SMARCA4 Missense_Mutation p.S1422F 0.62 benign(0.064) TCGA-CV-7568-01 19 11332856 11332856 G A DOCK6 Silent p.F1103F 0.53 TCGA-CV-7568-01 19 11470547 11470547 C T DKFZP761J1410 Silent p.A77A 0.69 TCGA-CV-7568-01 19 11489349 11489349 G A EPOR Intron 0.57 TCGA-CV-7568-01 19 11591436 11591436 G A ELAVL3 5'UTR 0.08 TCGA-CV-7568-01 19 11591437 11591437 G A ELAVL3 5'UTR 0.08 TCGA-CV-7568-01 19 11978939 11978939 G A ZNF439 Missense_Mutation p.R352K 0.09 tolerated(1) benign(0.136) TCGA-CV-7568-01 19 12125812 12125812 C T ZNF433 Missense_Mutation p.G624R 0.40 deleterious(0.03) probably_damaging(1) TCGA-CV-7568-01 19 12155188 12155188 T A ZNF878 Missense_Mutation p.K343I 0.31 tolerated(0.15) benign(0.003) TCGA-CV-7568-01 19 12511888 12511888 C T ZNF799 5'UTR 0.35 TCGA-CV-7568-01 19 12780244 12780244 C T WDR83OS 5'UTR 0.62 TCGA-CV-7568-01 19 12817449 12817449 G A TNPO2 Silent p.P477P 0.33 TCGA-CV-7568-01 19 12817450 12817450 G A TNPO2 Missense_Mutation p.P477L 0.34 deleterious(0) benign(0.261) TCGA-CV-7568-01 19 12829917 12829917 G - TNPO2 Frame_Shift_Del p.P84Lfs*90 0.29 TCGA-CV-7568-01 19 12962939 12962939 C T MAST1 Missense_Mutation p.P296L 0.31 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 19 12979965 12979965 C T MAST1 Silent p.P953P 0.32 TCGA-CV-7568-01 19 12989535 12989535 C T DNASE2 Missense_Mutation p.G154R 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-CV-7568-01 19 1360624 1360624 C T MUM1 Missense_Mutation p.S236L 0.64 tolerated(0.16) benign(0.255) TCGA-CV-7568-01 19 14000435 14000435 G A C19orf57 Silent p.L412L 0.33 TCGA-CV-7568-01 19 14000436 14000436 G A C19orf57 Silent p.V411V 0.33 TCGA-CV-7568-01 19 14000492 14000492 C T C19orf57 Missense_Mutation p.E393K 0.41 deleterious(0.03) benign(0.003) TCGA-CV-7568-01 19 14000669 14000669 G A C19orf57 Missense_Mutation p.L334F 0.33 deleterious(0.03) probably_damaging(0.934) TCGA-CV-7568-01 19 14031425 14031425 C T CC2D1A Missense_Mutation p.P471L 0.41 tolerated(0.1) benign(0.097) TCGA-CV-7568-01 19 14079442 14079442 C T RFX1 Missense_Mutation p.G556E 0.37 deleterious(0.04) possibly_damaging(0.694) TCGA-CV-7568-01 19 1438475 1438475 T A RPS15 Intron 0.50 TCGA-CV-7568-01 19 14513433 14513433 C T CD97 Missense_Mutation p.S403F 0.36 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 19 14513434 14513434 C T CD97 Silent p.S403S 0.36 TCGA-CV-7568-01 19 14698432 14698432 T C CLEC17A Missense_Mutation p.M43T 0.41 tolerated_low_confidence(0.11) benign(0.001) TCGA-CV-7568-01 19 14829728 14829728 G A ZNF333 Missense_Mutation p.G530E 0.25 deleterious(0) probably_damaging(0.986) TCGA-CV-7568-01 19 15124552 15124552 G A CCDC105 Missense_Mutation p.M213I 0.28 deleterious(0.02) benign(0.238) TCGA-CV-7568-01 19 15164409 15164409 C T CASP14 Silent p.F48F 0.46 TCGA-CV-7568-01 19 15230043 15230043 G A ILVBL Missense_Mutation p.H329Y 0.35 deleterious(0.04) possibly_damaging(0.853) TCGA-CV-7568-01 19 15374332 15374332 C T BRD4 Missense_Mutation p.D414N 0.39 possibly_damaging(0.822) TCGA-CV-7568-01 19 15535766 15535766 G A WIZ Silent p.L563L 0.50 TCGA-CV-7568-01 19 15535767 15535767 G A WIZ Silent p.H562H 0.50 TCGA-CV-7568-01 19 15990174 15990174 G A CYP4F2 Missense_Mutation p.P460L 0.35 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 19 15997098 15997098 T A CYP4F2 Missense_Mutation p.L313F 0.40 deleterious(0) probably_damaging(0.972) TCGA-CV-7568-01 19 16890267 16890267 G A NWD1 Missense_Mutation p.G908R 0.44 deleterious(0) probably_damaging(0.988) TCGA-CV-7568-01 19 17057950 17057950 G A CPAMD8 Missense_Mutation p.P913S 0.36 tolerated(0.35) benign(0.008) TCGA-CV-7568-01 19 17291808 17291808 C T MYO9B Silent p.L764L 0.34 TCGA-CV-7568-01 19 17403623 17403623 G A ABHD8 Silent p.F389F 0.38 TCGA-CV-7568-01 19 17476587 17476587 G T PLVAP Missense_Mutation p.D229E 0.41 tolerated(0.08) benign(0.252) TCGA-CV-7568-01 19 17597622 17597622 G A SLC27A1 Missense_Mutation p.E140K 0.40 deleterious(0.02) probably_damaging(0.916) TCGA-CV-7568-01 19 17611616 17611616 G A SLC27A1 Missense_Mutation p.E523K 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 19 17838567 17838567 C T MAP1S Missense_Mutation p.P792S 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-CV-7568-01 19 17877568 17877568 C A FCHO1 Silent p.L95L 0.62 TCGA-CV-7568-01 19 17950353 17950353 C T JAK3 Nonsense_Mutation p.W458* 0.27 TCGA-CV-7568-01 19 18232672 18232672 C T MAST3 Missense_Mutation p.P58L 0.42 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 19 18288548 18288548 C T IFI30 Missense_Mutation p.L222F 0.44 tolerated(0.53) probably_damaging(0.999) TCGA-CV-7568-01 19 19030498 19030498 G A DDX49 5'UTR 0.44 TCGA-CV-7568-01 19 19135589 19135589 A T SUGP2 Missense_Mutation p.F523Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 19 19646389 19646389 C T YJEFN3 Missense_Mutation p.P199S 0.28 deleterious(0.04) possibly_damaging(0.718) TCGA-CV-7568-01 19 19646390 19646390 C T YJEFN3 Missense_Mutation p.P199L 0.30 tolerated(1) benign(0.115) TCGA-CV-7568-01 19 19765410 19765410 G A ATP13A1 Silent p.L585L 0.37 TCGA-CV-7568-01 19 20002338 20002338 C T ZNF253 Silent p.F94F 0.31 TCGA-CV-7568-01 19 20002339 20002339 C T ZNF253 Nonsense_Mutation p.Q95* 0.30 TCGA-CV-7568-01 19 20002804 20002804 C T ZNF253 Missense_Mutation p.H250Y 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-CV-7568-01 19 20748444 20748444 C T ZNF737 Translation_Start_Site p.M1? 0.30 deleterious(0.02) benign(0.084) TCGA-CV-7568-01 19 20808016 20808016 G A ZNF626 Missense_Mutation p.H223Y 0.43 deleterious(0.04) probably_damaging(0.99) TCGA-CV-7568-01 19 22154137 22154137 G A ZNF208 Silent p.A1233A 0.30 TCGA-CV-7568-01 19 22154397 22154397 C T ZNF208 Missense_Mutation p.G1147S 0.34 deleterious(0.02) probably_damaging(0.973) TCGA-CV-7568-01 19 22155687 22155687 C T ZNF208 Missense_Mutation p.G717R 0.39 tolerated(0.09) benign(0.161) TCGA-CV-7568-01 19 2216629 2216629 C T DOT1L Missense_Mutation p.P758L 0.54 tolerated_low_confidence(0.18) benign(0.003) TCGA-CV-7568-01 19 22379491 22379491 G A ZNF676 5'UTR 0.27 TCGA-CV-7568-01 19 2405440 2405440 G A TMPRSS9 Missense_Mutation p.E213K 0.64 deleterious(0) probably_damaging(0.911) TCGA-CV-7568-01 19 33444520 33444520 C T CEP89 Splice_Site p.X164_splice 0.05 TCGA-CV-7568-01 19 33535241 33535241 C T RHPN2 Silent p.R33R 0.43 TCGA-CV-7568-01 19 33702161 33702161 C T SLC7A10 Missense_Mutation p.G329E 0.32 deleterious(0) probably_damaging(0.99) TCGA-CV-7568-01 19 34887238 34887238 C T GPI Silent p.T376T 0.34 TCGA-CV-7568-01 19 35250228 35250228 G A ZNF599 Missense_Mutation p.S493F 0.36 tolerated(0.32) probably_damaging(0.969) TCGA-CV-7568-01 19 35450170 35450170 G A ZNF792 Missense_Mutation p.P197S 0.34 tolerated(0.15) possibly_damaging(0.719) TCGA-CV-7568-01 19 35512502 35512502 C T GRAMD1A Silent p.H524H 0.30 TCGA-CV-7568-01 19 35512503 35512503 C T GRAMD1A Missense_Mutation p.H525Y 0.30 deleterious(0.03) probably_damaging(0.942) TCGA-CV-7568-01 19 35524767 35524767 G A SCN1B Missense_Mutation p.R191Q 0.41 tolerated_low_confidence(0.63) benign(0) TCGA-CV-7568-01 19 35625002 35625002 G A LGI4 Silent p.L59L 0.50 TCGA-CV-7568-01 19 35836539 35836539 C T CD22 Missense_Mutation p.S748F 0.46 tolerated(0.06) benign(0.179) TCGA-CV-7568-01 19 36113525 36113525 C T HAUS5 Silent p.S558S 0.37 TCGA-CV-7568-01 19 36113526 36113526 C T HAUS5 Nonsense_Mutation p.Q559* 0.36 TCGA-CV-7568-01 19 36125268 36125268 G A RBM42 Nonsense_Mutation p.W376* 0.44 TCGA-CV-7568-01 19 36125269 36125269 G A RBM42 Missense_Mutation p.D377N 0.45 deleterious(0.04) unknown(0) TCGA-CV-7568-01 19 36128163 36128163 C T RBM42 Silent p.I413I 0.42 TCGA-CV-7568-01 19 362332 362332 G A THEG Silent p.I336I 0.74 TCGA-CV-7568-01 19 3623947 3623947 G A CACTIN Silent p.P127P 0.43 TCGA-CV-7568-01 19 36333131 36333131 C A NPHS1 Missense_Mutation p.G853V 0.29 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 19 36338958 36338958 G A NPHS1 Silent p.S475S 0.41 TCGA-CV-7568-01 19 36351463 36351463 A T KIRREL2 Silent p.P274P 0.39 TCGA-CV-7568-01 19 36351847 36351847 C T KIRREL2 Missense_Mutation p.S322F 0.20 tolerated(0.13) benign(0.064) TCGA-CV-7568-01 19 36509916 36509916 G A CLIP3 Missense_Mutation p.S356F 0.37 deleterious(0) possibly_damaging(0.832) TCGA-CV-7568-01 19 36595903 36595903 C T WDR62 Silent p.A1515A 0.33 TCGA-CV-7568-01 19 36727789 36727789 C T ZNF146 Silent p.I149I 0.43 TCGA-CV-7568-01 19 37211305 37211305 C T ZNF567 Missense_Mutation p.S529F 0.41 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 19 37367893 37367893 G A ZNF345 Missense_Mutation p.R54K 0.41 tolerated(0.22) benign(0.007) TCGA-CV-7568-01 19 3740700 3740700 C T TJP3 Silent p.D603D 0.60 TCGA-CV-7568-01 19 37643441 37643441 G A ZNF585A Missense_Mutation p.H399Y 0.34 tolerated(0.33) probably_damaging(0.975) TCGA-CV-7568-01 19 37853873 37853873 T A HKR1 Silent p.R392R 0.37 TCGA-CV-7568-01 19 37904541 37904541 G A ZNF569 Missense_Mutation p.S340F 0.33 deleterious(0.04) possibly_damaging(0.848) TCGA-CV-7568-01 19 38876799 38876799 C T GGN Missense_Mutation p.G368E 0.23 deleterious_low_confidence(0) unknown(0) TCGA-CV-7568-01 19 38876800 38876800 C T GGN Missense_Mutation p.G368R 0.27 deleterious_low_confidence(0) unknown(0) TCGA-CV-7568-01 19 38933001 38933001 G A RYR1 Missense_Mutation p.D60N 0.23 possibly_damaging(0.862) TCGA-CV-7568-01 19 38956791 38956791 G A RYR1 Silent p.T977T 0.46 TCGA-CV-7568-01 19 39075702 39075702 C T RYR1 Silent p.F4922F 0.40 TCGA-CV-7568-01 19 3908331 3908331 C T ATCAY Missense_Mutation p.L204F 0.75 tolerated(0.71) benign(0.126) TCGA-CV-7568-01 19 3964740 3964740 G A DAPK3 Silent p.F104F 0.64 TCGA-CV-7568-01 19 39660313 39660313 G A PAK4 Silent p.Q40Q 0.42 TCGA-CV-7568-01 19 39760639 39760639 G A IFNL2 Missense_Mutation p.D197N 0.20 deleterious(0.04) benign(0.068) TCGA-CV-7568-01 19 3982015 3982015 G A EEF2 Missense_Mutation p.S276L 0.65 tolerated(0.07) benign(0.069) TCGA-CV-7568-01 19 39994744 39994744 G A DLL3 Missense_Mutation p.G229D 0.29 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 19 40398045 40398045 G A FCGBP Missense_Mutation p.P2308S 0.27 possibly_damaging(0.876) TCGA-CV-7568-01 19 40704301 40704301 C T MAP3K10 Silent p.I234I 0.39 TCGA-CV-7568-01 19 40903172 40903172 G A PRX Missense_Mutation p.P363S 0.34 deleterious(0.03) possibly_damaging(0.803) TCGA-CV-7568-01 19 40929339 40929339 C T SERTAD1 Missense_Mutation p.A39T 0.39 tolerated(0.3) benign(0.001) TCGA-CV-7568-01 19 40929340 40929340 C T SERTAD1 Silent p.P38P 0.38 TCGA-CV-7568-01 19 41188694 41188694 G A NUMBL Missense_Mutation p.S113F 0.54 tolerated(0.07) possibly_damaging(0.877) TCGA-CV-7568-01 19 41854275 41854275 G A TGFB1 Silent p.P147P 0.35 TCGA-CV-7568-01 19 41889574 41889574 G A TMEM91 Intron 0.40 TCGA-CV-7568-01 19 41889575 41889575 G A TMEM91 Intron 0.43 TCGA-CV-7568-01 19 42191006 42191006 C T CEACAM7 Missense_Mutation p.E71K 0.30 tolerated(0.08) benign(0.202) TCGA-CV-7568-01 19 42260761 42260761 C T CEACAM6 Silent p.S106S 0.38 TCGA-CV-7568-01 19 42383095 42383095 C T CD79A Missense_Mutation p.P39S 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-CV-7568-01 19 42409915 42409915 C T ARHGEF1 Silent p.T795T 0.29 TCGA-CV-7568-01 19 42713945 42713945 C A DEDD2 Missense_Mutation p.G166C 0.37 tolerated(0.2) benign(0.21) TCGA-CV-7568-01 19 42862972 42862972 C T MEGF8 Missense_Mutation p.R1670W 0.48 tolerated_low_confidence(0.22) benign(0.046) TCGA-CV-7568-01 19 42906968 42906968 C T LIPE Missense_Mutation p.E920K 0.42 tolerated(0.1) benign(0.055) TCGA-CV-7568-01 19 43258544 43258544 G A PSG8 Missense_Mutation p.S395F 0.35 tolerated(0.24) benign(0.377) TCGA-CV-7568-01 19 43579506 43579506 G A PSG2 Missense_Mutation p.H237Y 0.36 tolerated(1) benign(0) TCGA-CV-7568-01 19 43579507 43579507 G A PSG2 Silent p.L236L 0.36 TCGA-CV-7568-01 19 44273918 44273918 C T KCNN4 Missense_Mutation p.E295K 0.39 deleterious(0.01) possibly_damaging(0.744) TCGA-CV-7568-01 19 44417484 44417484 G A ZNF45 3'UTR 0.41 TCGA-CV-7568-01 19 44605296 44605296 A C ZNF224 Silent p.A51A 0.47 TCGA-CV-7568-01 19 44777859 44777859 G A ZNF233 Missense_Mutation p.R349Q 0.28 deleterious(0.01) benign(0) TCGA-CV-7568-01 19 44777860 44777860 G A ZNF233 Silent p.R349R 0.29 TCGA-CV-7568-01 19 44832347 44832347 C T ZNF112 Missense_Mutation p.G661R 0.32 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 19 44891418 44891418 G A ZNF285 Missense_Mutation p.S330F 0.35 tolerated(0.69) benign(0.024) TCGA-CV-7568-01 19 45150650 45150650 C T PVR Missense_Mutation p.H79Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 19 45716410 45716410 G A EXOC3L2 Missense_Mutation p.L383F 0.27 deleterious(0.02) unknown(0) TCGA-CV-7568-01 19 45885896 45885896 G A PPP1R13L Silent p.F779F 0.43 TCGA-CV-7568-01 19 45900259 45900259 G A PPP1R13L Missense_Mutation p.R86W 0.32 deleterious_low_confidence(0.04) benign(0.033) TCGA-CV-7568-01 19 45900260 45900260 G A PPP1R13L Silent p.P85P 0.32 TCGA-CV-7568-01 19 46195241 46195241 C T SNRPD2 5'UTR 0.36 TCGA-CV-7568-01 19 46387762 46387762 G A IRF2BP1 Missense_Mutation p.A424V 0.44 deleterious(0) benign(0.036) TCGA-CV-7568-01 19 4702711 4702711 C T DPP9 Missense_Mutation p.D263N 0.91 tolerated(0.07) possibly_damaging(0.845) TCGA-CV-7568-01 19 47259974 47259974 C T FKRP Missense_Mutation p.R423C 0.36 deleterious(0) possibly_damaging(0.828) TCGA-CV-7568-01 19 47290723 47290723 C T SLC1A5 Missense_Mutation p.G167E 0.40 tolerated(0.17) benign(0.024) TCGA-CV-7568-01 19 47503786 47503786 C T ARHGAP35 Silent p.A1447A 0.29 TCGA-CV-7568-01 19 47539225 47539225 G A NPAS1 Missense_Mutation p.E176K 0.25 deleterious(0) possibly_damaging(0.585) TCGA-CV-7568-01 19 48305272 48305272 G A TPRX1 Silent p.P332P 0.35 TCGA-CV-7568-01 19 48543904 48543904 C T CABP5 Missense_Mutation p.E66K 0.42 deleterious(0) probably_damaging(0.975) TCGA-CV-7568-01 19 49000676 49000676 G A LMTK3 Missense_Mutation p.P1246L 0.23 unknown(0) TCGA-CV-7568-01 19 49000677 49000677 G A LMTK3 Missense_Mutation p.P1246S 0.23 unknown(0) TCGA-CV-7568-01 19 49134201 49134201 C T DBP Missense_Mutation p.E291K 0.41 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 19 49485572 49485572 G A GYS1 Silent p.F334F 0.43 TCGA-CV-7568-01 19 49494739 49494739 C T GYS1 Silent p.V40V 0.37 TCGA-CV-7568-01 19 49519378 49519378 C T LHB Missense_Mutation p.D125N 0.38 tolerated(0.56) benign(0.011) TCGA-CV-7568-01 19 49519457 49519457 G A LHB Silent p.P98P 0.35 TCGA-CV-7568-01 19 49692330 49692330 T C TRPM4 Silent p.F667F 0.37 TCGA-CV-7568-01 19 49842699 49842699 C T CD37 Intron 0.40 TCGA-CV-7568-01 19 50099897 50099897 C T PRR12 Missense_Mutation p.P769S 0.50 possibly_damaging(0.803) TCGA-CV-7568-01 19 50099935 50099935 C T PRR12 Silent p.L781L 0.32 TCGA-CV-7568-01 19 50099936 50099936 C T PRR12 Missense_Mutation p.L782F 0.32 possibly_damaging(0.765) TCGA-CV-7568-01 19 50335577 50335577 C T MED25 Missense_Mutation p.P463S 0.36 tolerated(0.55) benign(0.058) TCGA-CV-7568-01 19 50412009 50412009 G A NUP62 Silent p.L352L 0.35 TCGA-CV-7568-01 19 50548313 50548313 G A ZNF473 Missense_Mutation p.G205R 0.41 deleterious(0.04) probably_damaging(0.979) TCGA-CV-7568-01 19 50549887 50549887 C T ZNF473 Silent p.P729P 0.35 TCGA-CV-7568-01 19 51631689 51631689 G A SIGLEC9 Silent p.K375K 0.27 TCGA-CV-7568-01 19 51961241 51961241 C T SIGLEC8 Missense_Mutation p.S134N 0.32 tolerated(0.17) benign(0.295) TCGA-CV-7568-01 19 51961433 51961433 C T SIGLEC8 Missense_Mutation p.G70E 0.40 tolerated(0.07) benign(0.269) TCGA-CV-7568-01 19 51983645 51983645 C T CEACAM18 Silent p.T98T 0.27 TCGA-CV-7568-01 19 51986356 51986356 G A CEACAM18 Missense_Mutation p.M314I 0.38 tolerated(0.09) possibly_damaging(0.757) TCGA-CV-7568-01 19 52034538 52034538 C T SIGLEC6 Silent p.R101R 0.30 TCGA-CV-7568-01 19 52129352 52129352 C T SIGLEC5 Missense_Mutation p.R466K 0.31 tolerated(0.05) benign(0.377) TCGA-CV-7568-01 19 52249646 52249646 C G FPR1 Missense_Mutation p.R201T 0.35 tolerated(0.31) benign(0.221) TCGA-CV-7568-01 19 52250210 52250210 C T FPR1 Missense_Mutation p.G13E 0.58 tolerated(1) benign(0.001) TCGA-CV-7568-01 19 52327032 52327032 G A FPR3 Missense_Mutation p.E11K 0.31 tolerated(0.86) benign(0.005) TCGA-CV-7568-01 19 5238951 5238951 G A PTPRS Missense_Mutation p.R610W 0.51 deleterious(0.01) possibly_damaging(0.582) TCGA-CV-7568-01 19 52468506 52468506 T C ZNF350 Silent p.R400R 0.36 TCGA-CV-7568-01 19 52519834 52519834 C T ZNF614 Silent p.G339G 0.40 TCGA-CV-7568-01 19 52794329 52794329 C T ZNF766 Missense_Mutation p.H429Y 0.37 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 19 52825847 52825847 C T ZNF480 Silent p.I448I 0.38 TCGA-CV-7568-01 19 53270695 53270695 C T ZNF600 Missense_Mutation p.G105D 0.42 deleterious(0.02) benign(0.11) TCGA-CV-7568-01 19 53303906 53303906 G A ZNF28 Missense_Mutation p.L398F 0.34 deleterious(0.04) probably_damaging(0.981) TCGA-CV-7568-01 19 53473764 53473764 C T ZNF702P RNA 0.32 TCGA-CV-7568-01 19 53572108 53572108 G A ZNF160 Missense_Mutation p.S560F 0.36 deleterious(0) probably_damaging(0.99) TCGA-CV-7568-01 19 53572905 53572905 A G ZNF160 Silent p.F294F 0.39 TCGA-CV-7568-01 19 536323 536323 C A CDC34 Missense_Mutation p.N115K 0.64 deleterious(0) probably_damaging(0.993) TCGA-CV-7568-01 19 536324 536324 C T CDC34 Missense_Mutation p.P116S 0.64 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 19 536325 536325 C T CDC34 Missense_Mutation p.P116L 0.64 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 19 53643936 53643936 C T ZNF347 Silent p.G716G 0.34 TCGA-CV-7568-01 19 53668207 53668207 T C ZNF665 Silent p.K512K 0.39 TCGA-CV-7568-01 19 53668314 53668314 G A ZNF665 Missense_Mutation p.R477W 0.35 tolerated(0.06) possibly_damaging(0.888) TCGA-CV-7568-01 19 53889447 53889447 C T ZNF525 3'Flank 0.32 TCGA-CV-7568-01 19 54081122 54081122 G A ZNF331 Silent p.A436A 0.45 TCGA-CV-7568-01 19 54137815 54137815 G A DPRX Missense_Mutation p.R20Q 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-CV-7568-01 19 54172509 54172509 G A MIR512-1 3'Flank 0.25 TCGA-CV-7568-01 19 54182275 54182275 C T MIR515-1 RNA 0.33 TCGA-CV-7568-01 19 54244633 54244633 C A MIR517C RNA 0.35 TCGA-CV-7568-01 19 54407892 54407892 C T PRKCG Missense_Mutation p.P554S 0.17 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 19 54783921 54783921 G A LILRB2 Missense_Mutation p.P27L 0.38 deleterious(0.04) benign(0.043) TCGA-CV-7568-01 19 54802123 54802123 G A LILRA3 Silent p.F355F 0.38 TCGA-CV-7568-01 19 54866806 54866806 C T LAIR1 3'UTR 0.47 TCGA-CV-7568-01 19 55174344 55174344 C T LILRB4 5'UTR 0.31 TCGA-CV-7568-01 19 55179557 55179557 C T LILRB4 3'UTR 0.52 TCGA-CV-7568-01 19 55247519 55247519 C T KIR3DL3 Missense_Mutation p.P397S 0.68 tolerated(0.22) benign(0.04) TCGA-CV-7568-01 19 55349226 55349226 C T KIR2DS4 Missense_Mutation p.P89L 0.77 deleterious_low_confidence(0.01) possibly_damaging(0.81) TCGA-CV-7568-01 19 55349227 55349227 C T KIR2DS4 Silent p.P89P 0.78 TCGA-CV-7568-01 19 55672075 55672075 C T DNAAF3 Silent p.A395A 0.38 TCGA-CV-7568-01 19 55820079 55820079 C T BRSK1 Missense_Mutation p.S721F 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.884) TCGA-CV-7568-01 19 55889466 55889466 C T TMEM190 Silent p.S143S 0.40 TCGA-CV-7568-01 19 56047458 56047458 C T SBK2 Silent p.L68L 0.34 TCGA-CV-7568-01 19 56133381 56133381 G A ZNF784 Silent p.S236S 0.36 TCGA-CV-7568-01 19 56244544 56244544 G A NLRP9 Missense_Mutation p.S218F 0.38 deleterious(0.03) probably_damaging(0.975) TCGA-CV-7568-01 19 56244734 56244734 C T NLRP9 Missense_Mutation p.G155R 0.41 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 19 56303724 56303724 C T NLRP11 Missense_Mutation p.G819E 0.38 tolerated(0.14) possibly_damaging(0.503) TCGA-CV-7568-01 19 56320538 56320538 C T NLRP11 Missense_Mutation p.E480K 0.32 tolerated(0.1) possibly_damaging(0.761) TCGA-CV-7568-01 19 56321436 56321436 G A NLRP11 Silent p.I180I 0.31 TCGA-CV-7568-01 19 56373416 56373416 C T NLRP4 Nonsense_Mutation p.Q693* 0.35 TCGA-CV-7568-01 19 56373427 56373427 G A NLRP4 Silent p.L696L 0.36 TCGA-CV-7568-01 19 56423611 56423611 C T NLRP13 Silent p.K524K 0.39 TCGA-CV-7568-01 19 56459380 56459380 G A NLRP8 Missense_Mutation p.E38K 0.37 tolerated(0.29) benign(0.006) TCGA-CV-7568-01 19 56549454 56549454 C T NLRP5 Silent p.S893S 0.48 TCGA-CV-7568-01 19 56896329 56896329 C T ZNF582 Missense_Mutation p.D153N 0.36 tolerated(0.51) benign(0) TCGA-CV-7568-01 19 57286732 57286732 C T ZIM2 Missense_Mutation p.G303E 0.41 tolerated(0.09) benign(0.1) TCGA-CV-7568-01 19 57333096 57333096 G A PEG3 Missense_Mutation p.P198S 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-CV-7568-01 19 57335918 57335918 C T PEG3 Missense_Mutation p.G36R 0.44 tolerated(0.23) benign(0.012) TCGA-CV-7568-01 19 5749141 5749141 G A CATSPERD Missense_Mutation p.E312K 0.65 deleterious(0.03) possibly_damaging(0.597) TCGA-CV-7568-01 19 57640145 57640145 G A USP29 Silent p.K34K 0.42 TCGA-CV-7568-01 19 57647164 57647164 G A ZIM3 Missense_Mutation p.R181C 0.35 tolerated(0.18) benign(0.001) TCGA-CV-7568-01 19 57839469 57839469 C T ZNF543 Silent p.L213L 0.42 TCGA-CV-7568-01 19 57908527 57908527 C T ZNF548 Missense_Mutation p.L55F 0.37 deleterious(0) possibly_damaging(0.858) TCGA-CV-7568-01 19 58084505 58084505 G A ZNF416 Missense_Mutation p.S256F 0.46 deleterious(0.04) possibly_damaging(0.69) TCGA-CV-7568-01 19 58232399 58232399 T C ZNF671 Missense_Mutation p.Q352R 0.35 tolerated(0.47) benign(0.235) TCGA-CV-7568-01 19 58549384 58549384 G A ZSCAN1 Nonsense_Mutation p.W60* 0.50 TCGA-CV-7568-01 19 58565258 58565258 G A ZSCAN1 Missense_Mutation p.G356S 0.57 tolerated(0.27) probably_damaging(0.997) TCGA-CV-7568-01 19 58596244 58596244 C T ZSCAN18 Nonsense_Mutation p.W503* 0.33 TCGA-CV-7568-01 19 58758137 58758137 G A ZNF544 Missense_Mutation p.R74K 0.30 tolerated(0.43) benign(0.001) TCGA-CV-7568-01 19 58758138 58758138 G A ZNF544 Silent p.R74R 0.30 TCGA-CV-7568-01 19 58862847 58862847 C T A1BG Missense_Mutation p.G274R 0.38 tolerated(0.14) benign(0.248) TCGA-CV-7568-01 19 58864480 58864480 G A A1BG Missense_Mutation p.H52Y 0.42 tolerated(0.75) benign(0.001) TCGA-CV-7568-01 19 59010871 59010871 C T SLC27A5 Missense_Mutation p.G552E 0.38 deleterious(0) probably_damaging(0.95) TCGA-CV-7568-01 19 59010872 59010872 C T SLC27A5 Missense_Mutation p.G552R 0.38 deleterious(0) probably_damaging(0.974) TCGA-CV-7568-01 19 59028821 59028821 C T ZBTB45 Missense_Mutation p.V74M 0.39 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 19 59028822 59028822 C T ZBTB45 Silent p.P73P 0.39 TCGA-CV-7568-01 19 7795971 7795971 G A CLEC4G Missense_Mutation p.S75L 0.72 deleterious(0.02) benign(0.144) TCGA-CV-7568-01 19 7806570 7806570 C T CD209 3'UTR 0.84 TCGA-CV-7568-01 19 7998826 7998826 C T TIMM44 Silent p.R202R 0.63 TCGA-CV-7568-01 19 803562 803562 G A PTBP1 Missense_Mutation p.R14Q 0.63 tolerated(0.05) benign(0.006) TCGA-CV-7568-01 19 8188845 8188845 C T FBN3 Missense_Mutation p.G927R 0.63 tolerated(0.48) benign(0.378) TCGA-CV-7568-01 19 9062672 9062672 G A MUC16 Silent p.S8258S 0.53 TCGA-CV-7568-01 19 9062673 9062673 G A MUC16 Missense_Mutation p.S8258F 0.53 unknown(0) TCGA-CV-7568-01 19 9063304 9063304 C T MUC16 Missense_Mutation p.E8048K 0.51 unknown(0) TCGA-CV-7568-01 19 9089073 9089073 G A MUC16 Silent p.S914S 0.91 TCGA-CV-7568-01 19 9089074 9089074 G A MUC16 Missense_Mutation p.S914F 0.91 unknown(0) TCGA-CV-7568-01 19 9271436 9271436 G A ZNF317 Missense_Mutation p.R372H 0.64 deleterious(0.02) probably_damaging(0.991) TCGA-CV-7568-01 19 9525075 9525075 T A ZNF266 Nonsense_Mutation p.R176* 0.76 TCGA-CV-7568-01 19 9800843 9800843 C T ZNF812 Missense_Mutation p.E446K 0.62 tolerated(0.33) probably_damaging(0.996) TCGA-CV-7568-01 1 101188698 101188698 G A VCAM1 Missense_Mutation p.G155R 0.29 deleterious(0.02) probably_damaging(0.947) TCGA-CV-7568-01 1 101194832 101194832 C T VCAM1 Silent p.S366S 0.45 TCGA-CV-7568-01 1 102270264 102270264 G A OLFM3 Missense_Mutation p.L303F 0.35 deleterious(0.04) possibly_damaging(0.549) TCGA-CV-7568-01 1 103427755 103427755 C T COL11A1 Missense_Mutation p.E1031K 0.53 unknown(0) TCGA-CV-7568-01 1 103453203 103453203 G A COL11A1 Nonsense_Mutation p.Q830* 0.25 TCGA-CV-7568-01 1 103483419 103483419 C T COL11A1 Missense_Mutation p.G457D 0.21 probably_damaging(1) TCGA-CV-7568-01 1 103488354 103488354 G A COL11A1 Missense_Mutation p.P397S 0.29 benign(0.205) TCGA-CV-7568-01 1 103488399 103488399 C T COL11A1 Missense_Mutation p.D382N 0.65 probably_damaging(0.936) TCGA-CV-7568-01 1 103540328 103540328 C T COL11A1 Missense_Mutation p.R166Q 0.49 probably_damaging(0.994) TCGA-CV-7568-01 1 104120437 104120437 G A AMY2B Missense_Mutation p.R439K 0.43 tolerated(1) benign(0.007) TCGA-CV-7568-01 1 104160115 104160115 C T AMY2A Missense_Mutation p.S18F 0.37 deleterious(0) benign(0.002) TCGA-CV-7568-01 1 109299377 109299377 C T STXBP3 Missense_Mutation p.P83S 0.19 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 1 109735408 109735408 C T KIAA1324 Missense_Mutation p.S620F 0.22 deleterious(0.02) possibly_damaging(0.459) TCGA-CV-7568-01 1 109801499 109801499 C T CELSR2 Silent p.S1252S 0.53 TCGA-CV-7568-01 1 110883456 110883456 C T RBM15 Nonsense_Mutation p.R477* 0.51 TCGA-CV-7568-01 1 111854949 111854949 G A CHIA Missense_Mutation p.E65K 0.44 tolerated(0.53) benign(0.008) TCGA-CV-7568-01 1 111992029 111992029 C T ATP5F1 5'UTR 0.41 TCGA-CV-7568-01 1 112033366 112033366 G A ADORA3 Silent p.L123L 0.52 TCGA-CV-7568-01 1 112999861 112999861 C T CTTNBP2NL Missense_Mutation p.P583S 0.55 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 1 112999862 112999862 C T CTTNBP2NL Missense_Mutation p.P583L 0.57 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 1 113143419 113143419 C T ST7L Missense_Mutation p.R168K 0.29 tolerated(0.34) benign(0.006) TCGA-CV-7568-01 1 113666513 113666513 C T LRIG2 Silent p.P996P 0.43 TCGA-CV-7568-01 1 114447386 114447386 G C AP4B1 5'UTR 0.30 TCGA-CV-7568-01 1 115430287 115430287 G A SYCP1 Missense_Mutation p.E411K 0.17 tolerated(0.07) benign(0.143) TCGA-CV-7568-01 1 115455673 115455673 A G SYCP1 Missense_Mutation p.T517A 0.45 tolerated(0.07) benign(0.099) TCGA-CV-7568-01 1 116380887 116380887 G T NHLH2 Nonsense_Mutation p.S36* 0.42 TCGA-CV-7568-01 1 116562275 116562275 G A SLC22A15 Missense_Mutation p.G125R 0.45 deleterious(0) probably_damaging(0.963) TCGA-CV-7568-01 1 117158813 117158813 G A IGSF3 Silent p.L104L 0.20 TCGA-CV-7568-01 1 11716069 11716069 G A FBXO44 Silent p.E59E 0.19 TCGA-CV-7568-01 1 11775176 11775176 G A DRAXIN Missense_Mutation p.G283E 0.44 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 1 11907258 11907258 G A NPPA Missense_Mutation p.A121V 0.45 deleterious(0.01) benign(0.075) TCGA-CV-7568-01 1 11907497 11907497 C T NPPA Splice_Site p.X42_splice 0.41 TCGA-CV-7568-01 1 120056552 120056552 G A HSD3B1 Missense_Mutation p.E136K 0.23 tolerated(0.09) benign(0.062) TCGA-CV-7568-01 1 120306990 120306990 C T HMGCS2 Missense_Mutation p.D122N 0.22 tolerated(0.69) benign(0.038) TCGA-CV-7568-01 1 120512305 120512305 C T NOTCH2 Missense_Mutation p.G313S 0.40 deleterious(0.03) probably_damaging(1) TCGA-CV-7568-01 1 12064978 12064978 A G MFN2 Missense_Mutation p.M497V 0.56 deleterious(0) possibly_damaging(0.867) TCGA-CV-7568-01 1 12337250 12337250 A G VPS13D Missense_Mutation p.K1202R 0.42 possibly_damaging(0.702) TCGA-CV-7568-01 1 12854112 12854112 C T PRAMEF1 Silent p.F112F 0.11 TCGA-CV-7568-01 1 12884919 12884919 G A PRAMEF11 Silent p.L398L 0.32 TCGA-CV-7568-01 1 12919596 12919596 C T PRAMEF2 Silent p.F112F 0.58 TCGA-CV-7568-01 1 1323209 1323209 G A CCNL2 Missense_Mutation p.R387C 0.52 tolerated(0.1) benign(0.002) TCGA-CV-7568-01 1 1323210 1323210 G A CCNL2 Silent p.S386S 0.55 TCGA-CV-7568-01 1 1372443 1372443 C T VWA1 Silent p.A70A 0.34 TCGA-CV-7568-01 1 144852491 144852491 G A PDE4DIP Intron 0.11 TCGA-CV-7568-01 1 144917882 144917882 T G PDE4DIP Missense_Mutation p.E468D 0.10 tolerated(0.27) benign(0.018) TCGA-CV-7568-01 1 145103915 145103915 G A SEC22B RNA 0.50 TCGA-CV-7568-01 1 145296495 145296495 C T NBPF10 Silent p.S139S 0.29 TCGA-CV-7568-01 1 145530899 145530899 G A ITGA10 Missense_Mutation p.E211K 0.44 deleterious(0) probably_damaging(0.98) TCGA-CV-7568-01 1 150237006 150237006 G A CA14 Missense_Mutation p.E321K 0.40 tolerated(1) benign(0.002) TCGA-CV-7568-01 1 151205158 151205158 G A PIP5K1A Silent p.K206K 0.17 TCGA-CV-7568-01 1 151259471 151259471 C T ZNF687 Missense_Mutation p.A235V 0.20 tolerated(0.36) benign(0.002) TCGA-CV-7568-01 1 151261020 151261020 C T ZNF687 Missense_Mutation p.P711L 0.15 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 1 151261021 151261021 C T ZNF687 Silent p.P711P 0.15 TCGA-CV-7568-01 1 151396657 151396657 G A POGZ Missense_Mutation p.P431S 0.24 tolerated(1) benign(0.018) TCGA-CV-7568-01 1 151491492 151491492 C T CGN Missense_Mutation p.P166L 0.19 deleterious(0.03) benign(0.004) TCGA-CV-7568-01 1 151847310 151847310 G A THEM4 3'UTR 0.43 TCGA-CV-7568-01 1 152057805 152057805 C T TCHHL1 Missense_Mutation p.D785N 0.48 tolerated(0.25) benign(0.011) TCGA-CV-7568-01 1 152079984 152079984 G A TCHH Silent p.S1903S 0.50 TCGA-CV-7568-01 1 152185448 152185448 A G HRNR 3'UTR 0.30 TCGA-CV-7568-01 1 152191937 152191937 G A HRNR Missense_Mutation p.S723F 0.48 unknown(0) TCGA-CV-7568-01 1 152283284 152283284 G A FLG Missense_Mutation p.R1360C 0.21 possibly_damaging(0.898) TCGA-CV-7568-01 1 152283285 152283285 G A FLG Silent p.S1359S 0.22 TCGA-CV-7568-01 1 152285010 152285010 C T FLG Silent p.G784G 0.21 TCGA-CV-7568-01 1 152748972 152748972 C T LCE1F Missense_Mutation p.S42F 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-7568-01 1 152975579 152975579 C T SPRR3 Missense_Mutation p.P28L 0.37 deleterious(0) unknown(0) TCGA-CV-7568-01 1 153430317 153430317 G A S100A7 Missense_Mutation p.H91Y 0.45 deleterious(0) probably_damaging(0.933) TCGA-CV-7568-01 1 153914419 153914419 G A DENND4B Silent p.F327F 0.38 TCGA-CV-7568-01 1 154099876 154099876 C T NUP210L Missense_Mutation p.G366R 0.47 deleterious(0) probably_damaging(0.972) TCGA-CV-7568-01 1 154246418 154246418 C T HAX1 Missense_Mutation p.S162F 0.50 tolerated(0.66) benign(0.026) TCGA-CV-7568-01 1 154248134 154248134 C T HAX1 Missense_Mutation p.S266F 0.29 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 1 154898901 154898901 G A PMVK Missense_Mutation p.A124V 0.38 tolerated(0.29) benign(0.017) TCGA-CV-7568-01 1 155172169 155172169 G A THBS3 Silent p.F327F 0.23 TCGA-CV-7568-01 1 155630378 155630378 G A YY1AP1 Silent p.A579A 0.28 TCGA-CV-7568-01 1 155838038 155838038 G A SYT11 Missense_Mutation p.R106Q 0.48 tolerated(0.67) benign(0) TCGA-CV-7568-01 1 155851257 155851257 C T SYT11 Silent p.P418P 0.31 TCGA-CV-7568-01 1 156006758 156006758 G A UBQLN4 3'UTR 0.49 TCGA-CV-7568-01 1 156438605 156438605 G A MEF2D Missense_Mutation p.S405F 0.41 tolerated(0.19) benign(0.079) TCGA-CV-7568-01 1 156621425 156621425 G A BCAN Missense_Mutation p.G414E 0.41 tolerated(0.12) possibly_damaging(0.511) TCGA-CV-7568-01 1 156639725 156639725 C T NES Missense_Mutation p.G1419R 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7568-01 1 156640436 156640436 C T NES Missense_Mutation p.G1182R 0.23 tolerated(0.08) benign(0.012) TCGA-CV-7568-01 1 156642835 156642835 G A NES Missense_Mutation p.T382I 0.55 deleterious(0.03) benign(0.12) TCGA-CV-7568-01 1 157068516 157068516 G A ETV3L Silent p.P156P 0.30 TCGA-CV-7568-01 1 157068517 157068517 G T ETV3L Missense_Mutation p.P156H 0.30 deleterious(0) probably_damaging(0.98) TCGA-CV-7568-01 1 157516741 157516741 A G FCRL5 Missense_Mutation p.F100S 0.47 deleterious(0) probably_damaging(0.948) TCGA-CV-7568-01 1 157545400 157545400 C T FCRL4 Missense_Mutation p.D488N 0.19 tolerated(0.72) benign(0.014) TCGA-CV-7568-01 1 157737157 157737157 C T FCRL2 Silent p.G342G 0.29 TCGA-CV-7568-01 1 158516955 158516955 C T OR6Y1 Missense_Mutation p.G314E 0.16 tolerated(0.42) benign(0.021) TCGA-CV-7568-01 1 158614052 158614052 G A SPTA1 Silent p.I1443I 0.43 TCGA-CV-7568-01 1 158619695 158619695 C T SPTA1 Missense_Mutation p.E1174K 0.22 tolerated(0.14) probably_damaging(0.999) TCGA-CV-7568-01 1 158627453 158627453 C T SPTA1 Silent p.R873R 0.20 TCGA-CV-7568-01 1 158670072 158670072 G A OR6K2 Missense_Mutation p.A124V 0.20 deleterious(0) probably_damaging(0.991) TCGA-CV-7568-01 1 158746855 158746855 C T OR6N2 Missense_Mutation p.D191N 0.28 deleterious(0.02) benign(0.163) TCGA-CV-7568-01 1 158815606 158815606 C T MNDA Missense_Mutation p.T267I 0.15 tolerated(0.77) benign(0.15) TCGA-CV-7568-01 1 159284021 159284021 G A OR10J3 Silent p.I143I 0.36 TCGA-CV-7568-01 1 159558594 159558594 C T APCS 3'UTR 0.19 TCGA-CV-7568-01 1 161163958 161163958 G A ADAMTS4 Missense_Mutation p.P439S 0.43 deleterious(0.01) probably_damaging(0.976) TCGA-CV-7568-01 1 161163959 161163959 G A ADAMTS4 Silent p.F438F 0.44 TCGA-CV-7568-01 1 161275697 161275697 C T MPZ Missense_Mutation p.G239E 0.35 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 1 161722871 161722871 A T DUSP12 Silent p.S227S 0.49 TCGA-CV-7568-01 1 16256527 16256527 C T SPEN Silent p.V1264V 0.20 TCGA-CV-7568-01 1 16260017 16260017 C T SPEN Missense_Mutation p.P2428S 0.62 benign(0.135) TCGA-CV-7568-01 1 162725086 162725086 C T DDR2 Silent p.V186V 0.26 TCGA-CV-7568-01 1 162748417 162748417 G T DDR2 Missense_Mutation p.L777F 0.38 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 1 162824805 162824805 C T C1orf110 Missense_Mutation p.G220E 0.53 tolerated(0.42) benign(0.002) TCGA-CV-7568-01 1 16383003 16383003 G A CLCNKB Silent p.E672E 0.46 TCGA-CV-7568-01 1 16383004 16383004 G A CLCNKB Splice_Site p.X672_splice 0.46 TCGA-CV-7568-01 1 166039875 166039875 T C FAM78B Missense_Mutation p.K130R 0.26 tolerated(0.4) possibly_damaging(0.616) TCGA-CV-7568-01 1 1663930 1663930 G A SLC35E2 Silent p.S255S 0.32 TCGA-CV-7568-01 1 167095284 167095284 G A DUSP27 Missense_Mutation p.G306R 0.29 deleterious(0.03) benign(0.204) TCGA-CV-7568-01 1 167095285 167095285 G A DUSP27 Missense_Mutation p.G306E 0.29 tolerated(0.07) benign(0.436) TCGA-CV-7568-01 1 167096524 167096524 C T DUSP27 Missense_Mutation p.S719F 0.35 deleterious(0) possibly_damaging(0.868) TCGA-CV-7568-01 1 167368547 167368547 G A POU2F1 Missense_Mutation p.S465N 0.45 tolerated(0.05) unknown(0) TCGA-CV-7568-01 1 168250508 168250508 G A TBX19 Silent p.E60E 0.25 TCGA-CV-7568-01 1 169509869 169509869 G A F5 Missense_Mutation p.L1487F 0.34 tolerated(0.16) benign(0.132) TCGA-CV-7568-01 1 169578792 169578792 A G SELP Missense_Mutation p.V428A 0.24 tolerated(0.56) benign(0.012) TCGA-CV-7568-01 1 169696637 169696637 C T SELE Missense_Mutation p.G500R 0.36 tolerated(0.41) benign(0.049) TCGA-CV-7568-01 1 169697064 169697064 C T SELE Silent p.V428V 0.28 TCGA-CV-7568-01 1 169701074 169701074 G A SELE Missense_Mutation p.T144I 0.41 deleterious(0) possibly_damaging(0.848) TCGA-CV-7568-01 1 17030484 17030484 G A ESPNP RNA 0.08 TCGA-CV-7568-01 1 170958993 170958993 C T MROH9 Intron 0.26 TCGA-CV-7568-01 1 174973897 174973897 C T CACYBP Missense_Mutation p.L55F 0.43 tolerated(0.58) benign(0.008) TCGA-CV-7568-01 1 17597416 17597416 C T PADI3 Nonsense_Mutation p.R292* 0.27 TCGA-CV-7568-01 1 17607202 17607202 G A PADI3 Missense_Mutation p.E558K 0.26 deleterious(0.04) possibly_damaging(0.817) TCGA-CV-7568-01 1 182026190 182026190 G C ZNF648 Missense_Mutation p.S319C 0.15 deleterious(0.03) benign(0.06) TCGA-CV-7568-01 1 183072553 183072553 G C LAMC1 Missense_Mutation p.G170A 0.41 deleterious(0.02) probably_damaging(0.921) TCGA-CV-7568-01 1 183515292 183515292 G A SMG7 Missense_Mutation p.M808I 0.18 deleterious_low_confidence(0.01) benign(0.049) TCGA-CV-7568-01 1 183908159 183908159 C T COLGALT2 Silent p.K539K 0.50 TCGA-CV-7568-01 1 185278582 185278582 A G IVNS1ABP Missense_Mutation p.I15T 0.40 tolerated(0.33) benign(0.076) TCGA-CV-7568-01 1 186022089 186022089 C T HMCN1 Missense_Mutation p.P2195S 0.13 probably_damaging(0.98) TCGA-CV-7568-01 1 186084396 186084396 C T HMCN1 Missense_Mutation p.P3804L 0.21 probably_damaging(0.999) TCGA-CV-7568-01 1 186088430 186088430 G A HMCN1 Missense_Mutation p.E3986K 0.47 probably_damaging(0.977) TCGA-CV-7568-01 1 18661444 18661444 G A IGSF21 Missense_Mutation p.D122N 0.56 tolerated(0.11) benign(0.109) TCGA-CV-7568-01 1 190067661 190067661 C T BRINP3 Nonsense_Mutation p.W596* 0.52 TCGA-CV-7568-01 1 190129883 190129883 G A BRINP3 Silent p.L367L 0.40 TCGA-CV-7568-01 1 19440289 19440289 G T UBR4 Silent p.S3787S 0.67 TCGA-CV-7568-01 1 19493610 19493610 C T UBR4 Missense_Mutation p.G1339S 0.51 probably_damaging(0.999) TCGA-CV-7568-01 1 196876487 196876487 G A CFHR4 Missense_Mutation p.G219R 0.12 deleterious(0) probably_damaging(0.993) TCGA-CV-7568-01 1 196977705 196977705 G A CFHR5 Silent p.G534G 0.55 TCGA-CV-7568-01 1 197026303 197026303 C T F13B Silent p.E337E 0.49 TCGA-CV-7568-01 1 197072675 197072675 C T ASPM Silent p.L1902L 0.54 TCGA-CV-7568-01 1 200969700 200969700 G A KIF21B Silent p.S501S 0.26 TCGA-CV-7568-01 1 201021714 201021714 G A CACNA1S Silent p.T1308T 0.43 TCGA-CV-7568-01 1 201041907 201041907 G A CACNA1S Missense_Mutation p.P735S 0.24 tolerated(0.11) benign(0.002) TCGA-CV-7568-01 1 202270008 202270008 C T LGR6 Missense_Mutation p.P273S 0.40 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 1 20302328 20302328 C T PLA2G2A Missense_Mutation p.D101N 0.49 tolerated(0.26) benign(0.018) TCGA-CV-7568-01 1 203194943 203194943 C T CHIT1 Silent p.G37G 0.45 TCGA-CV-7568-01 1 203317164 203317164 C A FMOD Nonsense_Mutation p.E79* 0.55 TCGA-CV-7568-01 1 203317338 203317338 C T FMOD Missense_Mutation p.E21K 0.42 tolerated(0.19) benign(0.081) TCGA-CV-7568-01 1 204091058 204091058 C T SOX13 Missense_Mutation p.P269L 0.46 deleterious(0.03) benign(0.004) TCGA-CV-7568-01 1 204167525 204167525 C T GOLT1A 3'UTR 0.49 TCGA-CV-7568-01 1 204237425 204237425 G A PLEKHA6 Missense_Mutation p.R40C 0.27 deleterious(0) possibly_damaging(0.75) TCGA-CV-7568-01 1 204937395 204937395 G A NFASC Missense_Mutation p.R242K 0.28 tolerated(0.05) benign(0.188) TCGA-CV-7568-01 1 205069074 205069074 G A RBBP5 Missense_Mutation p.H291Y 0.26 deleterious(0.03) probably_damaging(0.968) TCGA-CV-7568-01 1 205069075 205069075 G A RBBP5 Silent p.L290L 0.26 TCGA-CV-7568-01 1 205238548 205238548 C T TMCC2 Silent p.V406V 0.40 TCGA-CV-7568-01 1 206224958 206224958 C T AVPR1B Missense_Mutation p.S173F 0.35 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 1 207753920 207753920 C T CR1 Silent p.L1726L 0.72 TCGA-CV-7568-01 1 208315720 208315720 G A PLXNA2 Missense_Mutation p.A487V 0.82 tolerated(0.65) probably_damaging(0.976) TCGA-CV-7568-01 1 209791281 209791281 G A LAMB3 Missense_Mutation p.L1008F 0.25 deleterious(0) possibly_damaging(0.768) TCGA-CV-7568-01 1 209791282 209791282 G A LAMB3 Silent p.S1007S 0.24 TCGA-CV-7568-01 1 2160947 2160947 C T SKI Silent p.L248L 0.54 TCGA-CV-7568-01 1 216850733 216850733 C T ESRRG Missense_Mutation p.V58I 0.06 tolerated_low_confidence(0.48) benign(0.003) TCGA-CV-7568-01 1 220089093 220089093 C T SLC30A10 Missense_Mutation p.D386N 0.34 deleterious(0.04) benign(0.248) TCGA-CV-7568-01 1 22028022 22028022 G A USP48 Missense_Mutation p.P899L 0.16 tolerated(0.38) benign(0) TCGA-CV-7568-01 1 22150743 22150743 G A LDLRAD2 3'UTR 0.47 TCGA-CV-7568-01 1 22150744 22150744 G A LDLRAD2 3'UTR 0.48 TCGA-CV-7568-01 1 22178595 22178595 G A HSPG2 Missense_Mutation p.P2286S 0.24 possibly_damaging(0.669) TCGA-CV-7568-01 1 22201441 22201441 G A HSPG2 Silent p.P1119P 0.25 TCGA-CV-7568-01 1 22206875 22206875 G A HSPG2 Missense_Mutation p.H726Y 0.51 probably_damaging(0.925) TCGA-CV-7568-01 1 22206876 22206876 G A HSPG2 Silent p.A725A 0.53 TCGA-CV-7568-01 1 223179117 223179117 C T DISP1 Missense_Mutation p.P1460S 0.65 tolerated_low_confidence(0.07) benign(0.004) TCGA-CV-7568-01 1 223179118 223179118 C T DISP1 Missense_Mutation p.P1460L 0.65 deleterious_low_confidence(0.02) benign(0.033) TCGA-CV-7568-01 1 227842474 227842474 C T ZNF678 Missense_Mutation p.H175Y 0.26 deleterious(0.04) possibly_damaging(0.796) TCGA-CV-7568-01 1 22835697 22835697 G C ZBTB40 Missense_Mutation p.E602Q 0.19 tolerated(0.15) unknown(0) TCGA-CV-7568-01 1 228548409 228548409 C T OBSCN Intron 0.70 TCGA-CV-7568-01 1 228553779 228553779 C T OBSCN Silent p.P7313P 0.57 TCGA-CV-7568-01 1 228559547 228559547 C T OBSCN Missense_Mutation p.S7980F 0.79 possibly_damaging(0.742) TCGA-CV-7568-01 1 228559548 228559548 C T OBSCN Silent p.S7980S 0.81 TCGA-CV-7568-01 1 22915689 22915689 G A EPHA8 Silent p.T435T 0.24 TCGA-CV-7568-01 1 22927811 22927811 C T EPHA8 Silent p.F916F 0.46 TCGA-CV-7568-01 1 22965568 22965568 G A C1QA Missense_Mutation p.V136I 0.22 tolerated(1) benign(0.008) TCGA-CV-7568-01 1 229772433 229772433 C T URB2 Silent p.F691F 0.74 TCGA-CV-7568-01 1 230513310 230513310 C T PGBD5 Missense_Mutation p.G20R 0.38 deleterious_low_confidence(0.02) benign(0.005) TCGA-CV-7568-01 1 230838923 230838923 G A AGT Silent p.F474F 0.51 TCGA-CV-7568-01 1 231344869 231344869 C T TRIM67 Missense_Mutation p.P666S 0.70 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 1 232601075 232601075 C A SIPA1L2 Silent p.R777R 0.75 TCGA-CV-7568-01 1 2337938 2337938 C A PEX10 Silent p.A319A 0.35 TCGA-CV-7568-01 1 233807018 233807018 T C KCNK1 Silent p.C251C 0.24 TCGA-CV-7568-01 1 234529521 234529521 G A TARBP1 Missense_Mutation p.P1436S 0.41 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 1 234586268 234586268 G A TARBP1 Silent p.S589S 0.33 TCGA-CV-7568-01 1 23520170 23520170 G A HTR1D Silent p.A181A 0.31 TCGA-CV-7568-01 1 237666759 237666759 C T RYR2 Missense_Mutation p.S856F 0.70 benign(0.224) TCGA-CV-7568-01 1 237730043 237730043 G A RYR2 Missense_Mutation p.D1131N 0.80 probably_damaging(0.999) TCGA-CV-7568-01 1 237777985 237777985 G A RYR2 Missense_Mutation p.E1853K 0.28 benign(0.039) TCGA-CV-7568-01 1 237798220 237798220 G A RYR2 Silent p.L2240L 0.67 TCGA-CV-7568-01 1 237819251 237819251 G A RYR2 Missense_Mutation p.G2699E 0.69 probably_damaging(1) TCGA-CV-7568-01 1 237890480 237890480 C T RYR2 Missense_Mutation p.P3607S 0.46 possibly_damaging(0.772) TCGA-CV-7568-01 1 237895414 237895414 C T RYR2 Silent p.I3668I 0.76 TCGA-CV-7568-01 1 23953612 23953612 C A MDS2 5'Flank 0.28 TCGA-CV-7568-01 1 240071631 240071631 G A CHRM3 Missense_Mutation p.E294K 0.27 tolerated(0.39) benign(0.046) TCGA-CV-7568-01 1 240371744 240371744 C T FMN2 Missense_Mutation p.P1211L 0.62 unknown(0) TCGA-CV-7568-01 1 240371745 240371745 C T FMN2 Silent p.P1211P 0.62 TCGA-CV-7568-01 1 240964793 240964793 C T RGS7 Missense_Mutation p.D459N 0.83 tolerated(0.1) benign(0.056) TCGA-CV-7568-01 1 240976931 240976931 C T RGS7 Missense_Mutation p.E315K 0.74 deleterious(0.03) probably_damaging(0.986) TCGA-CV-7568-01 1 2445840 2445840 G A PANK4 Silent p.F480F 0.53 TCGA-CV-7568-01 1 247588039 247588039 C T NLRP3 Missense_Mutation p.L432F 0.41 deleterious(0.04) probably_damaging(0.955) TCGA-CV-7568-01 1 247875782 247875782 T C OR6F1 Missense_Mutation p.I92M 0.72 deleterious(0.01) probably_damaging(0.988) TCGA-CV-7568-01 1 24790575 24790575 C T NIPAL3 Missense_Mutation p.P329L 0.22 tolerated(1) benign(0.055) TCGA-CV-7568-01 1 247978452 247978452 C T OR14A16 Missense_Mutation p.E194K 0.69 deleterious(0.04) probably_damaging(0.994) TCGA-CV-7568-01 1 248084355 248084355 C T OR2T8 Silent p.L12L 0.41 TCGA-CV-7568-01 1 248201602 248201602 C T OR2L2 Silent p.F11F 0.43 TCGA-CV-7568-01 1 248202350 248202350 C T OR2L2 Missense_Mutation p.P261S 0.46 deleterious(0.03) possibly_damaging(0.89) TCGA-CV-7568-01 1 248224262 248224262 C T OR2L3 Silent p.F93F 0.22 TCGA-CV-7568-01 1 248308465 248308465 C T OR2M5 Nonsense_Mutation p.Q6* 0.68 TCGA-CV-7568-01 1 248366679 248366679 T G OR2M3 Missense_Mutation p.Y104D 0.76 deleterious(0) possibly_damaging(0.655) TCGA-CV-7568-01 1 248512100 248512100 G A OR14C36 Missense_Mutation p.M8I 0.69 deleterious(0.04) benign(0.003) TCGA-CV-7568-01 1 248525838 248525838 C T OR2T4 Missense_Mutation p.P319L 0.79 deleterious(0) probably_damaging(0.971) TCGA-CV-7568-01 1 248636947 248636947 C T OR2T3 Missense_Mutation p.P99L 0.62 tolerated(0.75) benign(0.013) TCGA-CV-7568-01 1 26349152 26349152 G A EXTL1 Silent p.R5R 0.43 TCGA-CV-7568-01 1 26510594 26510594 G A CNKSR1 Silent p.Q296Q 0.23 TCGA-CV-7568-01 1 26664049 26664049 G A AIM1L Silent p.S334S 0.51 TCGA-CV-7568-01 1 26691179 26691179 C T ZNF683 Silent p.L286L 0.23 TCGA-CV-7568-01 1 27101169 27101169 C T ARID1A Missense_Mutation p.P1484L 0.30 unknown(0) TCGA-CV-7568-01 1 27190458 27190458 C T SFN 3'UTR 0.48 TCGA-CV-7568-01 1 27224200 27224200 G A GPATCH3 Silent p.P156P 0.24 TCGA-CV-7568-01 1 27224201 27224201 G A GPATCH3 Missense_Mutation p.P156L 0.24 deleterious(0.02) benign(0.423) TCGA-CV-7568-01 1 27876729 27876729 G A AHDC1 Missense_Mutation p.S633L 0.32 deleterious(0) possibly_damaging(0.504) TCGA-CV-7568-01 1 27878366 27878366 C T AHDC1 Silent p.R87R 0.31 TCGA-CV-7568-01 1 28120125 28120125 C T STX12 Silent p.P90P 0.23 TCGA-CV-7568-01 1 29533322 29533322 G A MECR Missense_Mutation p.P168S 0.22 deleterious(0) probably_damaging(0.983) TCGA-CV-7568-01 1 31194585 31194585 C T MATN1 Silent p.R36R 0.25 TCGA-CV-7568-01 1 32085227 32085227 C T HCRTR1 Silent p.I98I 0.14 TCGA-CV-7568-01 1 32089206 32089206 G A HCRTR1 Missense_Mutation p.G274E 0.59 tolerated(1) benign(0.001) TCGA-CV-7568-01 1 32164198 32164198 G A COL16A1 Silent p.F92F 0.47 TCGA-CV-7568-01 1 32829353 32829353 G A TSSK3 Silent p.L101L 0.44 TCGA-CV-7568-01 1 33058894 33058894 C T ZBTB8A Missense_Mutation p.S121F 0.18 probably_damaging(1) TCGA-CV-7568-01 1 33282827 33282827 G A YARS Missense_Mutation p.P7S 0.49 tolerated(0.05) benign(0.114) TCGA-CV-7568-01 1 3328624 3328624 G A PRDM16 Silent p.T621T 0.29 TCGA-CV-7568-01 1 3386050 3386050 C T ARHGEF16 Silent p.I305I 0.51 TCGA-CV-7568-01 1 3432004 3432004 G A MEGF6 Missense_Mutation p.P231L 0.50 tolerated(0.07) benign(0.104) TCGA-CV-7568-01 1 35907888 35907888 G A KIAA0319L Silent p.A943A 0.29 TCGA-CV-7568-01 1 35944661 35944661 G A KIAA0319L Silent p.T273T 0.51 TCGA-CV-7568-01 1 3645888 3645888 C T TP73 Intron 0.17 TCGA-CV-7568-01 1 36752626 36752626 C T THRAP3 Silent p.P265P 0.51 TCGA-CV-7568-01 1 36752627 36752627 C T THRAP3 Missense_Mutation p.R266C 0.51 deleterious(0) possibly_damaging(0.649) TCGA-CV-7568-01 1 38227713 38227713 G A EPHA10 Missense_Mutation p.R72C 0.27 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 1 39806365 39806365 C T MACF1 Intron 0.78 TCGA-CV-7568-01 1 40313665 40313665 C T TRIT1 Missense_Mutation p.E270K 0.33 tolerated(0.21) benign(0.012) TCGA-CV-7568-01 1 40706218 40706218 A G RLF 3'UTR 0.38 TCGA-CV-7568-01 1 40706219 40706219 G A RLF 3'UTR 0.38 TCGA-CV-7568-01 1 40777366 40777366 G A COL9A2 Missense_Mutation p.P147S 0.50 tolerated(0.08) unknown(0) TCGA-CV-7568-01 1 40961127 40961127 C T ZFP69 Missense_Mutation p.P326L 0.49 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 1 40961128 40961128 C T ZFP69 Silent p.P326P 0.50 TCGA-CV-7568-01 1 41540981 41540981 C T SCMH1 Silent p.K286K 0.54 TCGA-CV-7568-01 1 42046085 42046085 G A HIVEP3 Missense_Mutation p.L1462F 0.48 benign(0.037) TCGA-CV-7568-01 1 43212531 43212531 G A LEPRE1 3'UTR 0.39 TCGA-CV-7568-01 1 43774666 43774666 C T TIE1 Missense_Mutation p.P351L 0.16 deleterious(0) possibly_damaging(0.504) TCGA-CV-7568-01 1 43774667 43774667 C T TIE1 Silent p.P351P 0.18 TCGA-CV-7568-01 1 43830433 43830433 G A ELOVL1 Silent p.S117S 0.45 TCGA-CV-7568-01 1 44069771 44069771 C T PTPRF Missense_Mutation p.T983I 0.21 deleterious(0.05) probably_damaging(0.998) TCGA-CV-7568-01 1 44422566 44422566 C T IPO13 Missense_Mutation p.L397F 0.25 deleterious(0) possibly_damaging(0.867) TCGA-CV-7568-01 1 45271237 45271237 C T PLK3 Missense_Mutation p.R610C 0.22 deleterious(0) benign(0.212) TCGA-CV-7568-01 1 46032265 46032265 C T AKR1A1 Missense_Mutation p.L37F 0.25 deleterious(0.01) possibly_damaging(0.54) TCGA-CV-7568-01 1 47610115 47610115 G A CYP4A22 Missense_Mutation p.D293N 0.51 deleterious(0.01) probably_damaging(0.986) TCGA-CV-7568-01 1 4834618 4834618 G A AJAP1 Intron 0.22 TCGA-CV-7568-01 1 4834619 4834619 G A AJAP1 Splice_Site 0.24 TCGA-CV-7568-01 1 52847412 52847412 G A ORC1 Nonsense_Mutation p.Q679* 0.39 TCGA-CV-7568-01 1 53459220 53459220 C T SCP2 Intron 0.37 TCGA-CV-7568-01 1 53459221 53459221 C T SCP2 Intron 0.37 TCGA-CV-7568-01 1 53558360 53558360 G A SLC1A7 Silent p.T299T 0.19 TCGA-CV-7568-01 1 53558361 53558361 G A SLC1A7 Missense_Mutation p.T299I 0.20 deleterious(0) probably_damaging(0.969) TCGA-CV-7568-01 1 53724084 53724084 G A LRP8 Missense_Mutation p.P706S 0.36 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 1 54665910 54665910 G A MRPL37 5'UTR 0.54 TCGA-CV-7568-01 1 55144428 55144428 G A MROH7 Silent p.K650K 0.47 TCGA-CV-7568-01 1 55175835 55175835 C T MROH7 Missense_Mutation p.S1316F 0.23 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-CV-7568-01 1 55317918 55317918 G A DHCR24 Silent p.A513A 0.56 TCGA-CV-7568-01 1 55474243 55474243 G A BSND Missense_Mutation p.G302E 0.49 tolerated(0.12) benign(0.318) TCGA-CV-7568-01 1 55559721 55559721 G A USP24 Silent p.S2081S 0.31 TCGA-CV-7568-01 1 57415395 57415395 C G C8B Missense_Mutation p.E233Q 0.42 deleterious(0.04) possibly_damaging(0.877) TCGA-CV-7568-01 1 6007209 6007209 G A NPHP4 Silent p.F358F 0.48 TCGA-CV-7568-01 1 60375617 60375617 G A CYP2J2 Missense_Mutation p.P234S 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-CV-7568-01 1 64608210 64608210 C T ROR1 Missense_Mutation p.R351C 0.58 deleterious(0.01) probably_damaging(0.964) TCGA-CV-7568-01 1 66036244 66036244 C T LEPR Silent p.T43T 0.22 TCGA-CV-7568-01 1 6680239 6680239 C T PHF13 Missense_Mutation p.S173F 0.32 deleterious(0.02) probably_damaging(0.938) TCGA-CV-7568-01 1 6680240 6680240 C T PHF13 Silent p.S173S 0.33 TCGA-CV-7568-01 1 67147816 67147816 C T SGIP1 Missense_Mutation p.P360L 0.24 tolerated_low_confidence(0.3) possibly_damaging(0.713) TCGA-CV-7568-01 1 67896100 67896100 C T SERBP1 5'Flank 0.50 TCGA-CV-7568-01 1 74492516 74492516 G A LRRIQ3 Missense_Mutation p.P619L 0.24 deleterious(0) benign(0.089) TCGA-CV-7568-01 1 74492517 74492517 G A LRRIQ3 Missense_Mutation p.P619S 0.24 deleterious(0.05) possibly_damaging(0.541) TCGA-CV-7568-01 1 74575193 74575193 C T LRRIQ3 Missense_Mutation p.R251K 0.35 tolerated(0.32) benign(0.01) TCGA-CV-7568-01 1 75038132 75038132 C T C1orf173 Missense_Mutation p.D1088N 0.43 tolerated(0.21) benign(0.387) TCGA-CV-7568-01 1 76878004 76878004 G A ST6GALNAC3 Silent p.K175K 0.21 TCGA-CV-7568-01 1 7724812 7724812 C T CAMTA1 Silent p.I735I 0.44 TCGA-CV-7568-01 1 7725001 7725001 G A CAMTA1 Silent p.G798G 0.54 TCGA-CV-7568-01 1 78191355 78191355 G A USP33 Missense_Mutation p.P441S 0.45 tolerated(0.1) probably_damaging(1) TCGA-CV-7568-01 1 78601474 78601474 C G GIPC2 3'UTR 0.32 TCGA-CV-7568-01 1 8022903 8022903 G A PARK7 Missense_Mutation p.V20I 0.77 tolerated(0.32) benign(0.004) TCGA-CV-7568-01 1 8418746 8418746 G A RERE Silent p.P1283P 0.35 TCGA-CV-7568-01 1 8420763 8420763 G A RERE Missense_Mutation p.P935L 0.31 unknown(0) TCGA-CV-7568-01 1 86590599 86590599 A C COL24A1 Missense_Mutation p.Y474D 0.50 tolerated(0.17) benign(0.009) TCGA-CV-7568-01 1 8716264 8716264 C T RERE Silent p.E31E 0.54 TCGA-CV-7568-01 1 89657044 89657044 C T GBP4 Silent p.L272L 0.25 TCGA-CV-7568-01 1 89734500 89734500 C T GBP5 Missense_Mutation p.G77E 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 1 89845978 89845978 C T GBP6 Missense_Mutation p.P220L 0.30 deleterious(0.03) possibly_damaging(0.573) TCGA-CV-7568-01 1 91731618 91731618 G A HFM1 Silent p.P1310P 0.23 TCGA-CV-7568-01 1 91850783 91850783 C T HFM1 Missense_Mutation p.E255K 0.28 tolerated(0.8) benign(0.001) TCGA-CV-7568-01 1 9188805 9188805 G A GPR157 Silent p.F94F 0.45 TCGA-CV-7568-01 1 92446708 92446708 C T BRDT Silent p.L575L 0.48 TCGA-CV-7568-01 1 92707815 92707815 G A C1orf146 Missense_Mutation p.R38Q 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-CV-7568-01 1 94654438 94654438 C T ARHGAP29 Missense_Mutation p.G546R 0.18 deleterious(0) probably_damaging(0.952) TCGA-CV-7568-01 1 9657024 9657024 G A TMEM201 Silent p.V114V 0.24 TCGA-CV-7568-01 1 9662281 9662281 G A TMEM201 Missense_Mutation p.A371T 0.54 deleterious(0.04) benign(0.052) TCGA-CV-7568-01 1 99771258 99771258 G A LPPR4 Silent p.G328G 0.44 TCGA-CV-7568-01 20 10625548 10625548 G A JAG1 Silent p.V769V 0.41 TCGA-CV-7568-01 20 1164568 1164568 C T TMEM74B 5'UTR 0.38 TCGA-CV-7568-01 20 126315 126315 C T DEFB126 Silent p.P106P 0.41 TCGA-CV-7568-01 20 1424429 1424429 G A NSFL1C Silent p.L362L 0.36 TCGA-CV-7568-01 20 18724858 18724858 G A DTD1 Missense_Mutation p.G198R 0.28 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-CV-7568-01 20 20150022 20150022 C T C20orf26 Nonsense_Mutation p.Q435* 0.32 TCGA-CV-7568-01 20 20226796 20226796 C T C20orf26 Missense_Mutation p.S699L 0.40 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 20 23065569 23065569 C T CD93 Missense_Mutation p.D421N 0.42 tolerated(0.19) benign(0.186) TCGA-CV-7568-01 20 2308911 2308911 G A TGM3 Silent p.K411K 0.33 TCGA-CV-7568-01 20 2308919 2308919 T A TGM3 Missense_Mutation p.V414E 0.46 tolerated(0.32) benign(0.001) TCGA-CV-7568-01 20 25277214 25277214 C T PYGB 3'UTR 0.44 TCGA-CV-7568-01 20 2542542 2542542 C T TMC2 Missense_Mutation p.S147F 0.35 deleterious(0.02) benign(0.009) TCGA-CV-7568-01 20 25655810 25655810 C T ZNF337 Missense_Mutation p.R705K 0.38 tolerated(0.08) benign(0.22) TCGA-CV-7568-01 20 25655811 25655811 T G ZNF337 Silent p.R705R 0.38 TCGA-CV-7568-01 20 30028510 30028510 C T DEFB123 Silent p.L3L 0.38 TCGA-CV-7568-01 20 30602763 30602763 C T CCM2L Silent p.A29A 0.39 TCGA-CV-7568-01 20 31372588 31372588 G A DNMT3B Missense_Mutation p.E77K 0.35 tolerated_low_confidence(0.29) probably_damaging(0.983) TCGA-CV-7568-01 20 31652272 31652272 C T BPIFB3 Missense_Mutation p.S221F 0.29 deleterious(0) benign(0.008) TCGA-CV-7568-01 20 31652273 31652273 C T BPIFB3 Silent p.S221S 0.29 TCGA-CV-7568-01 20 31829252 31829252 C T BPIFA1 Silent p.L215L 0.40 TCGA-CV-7568-01 20 33867794 33867794 G A EIF6 Missense_Mutation p.S166L 0.43 deleterious(0) benign(0.263) TCGA-CV-7568-01 20 34542150 34542150 C T SCAND1 Silent p.P19P 0.18 TCGA-CV-7568-01 20 34778667 34778667 C T EPB41L1 Silent p.F416F 0.36 TCGA-CV-7568-01 20 34809819 34809819 G A EPB41L1 Missense_Mutation p.E825K 0.36 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 20 35060384 35060384 C T DLGAP4 Silent p.F88F 0.32 TCGA-CV-7568-01 20 37053897 37053897 G A SNORA71B RNA 0.29 TCGA-CV-7568-01 20 37053898 37053898 G A SNORA71B RNA 0.30 TCGA-CV-7568-01 20 3734697 3734697 C T C20orf27 3'UTR 0.14 TCGA-CV-7568-01 20 37643520 37643520 C T DHX35 Intron 0.39 TCGA-CV-7568-01 20 39977494 39977494 C T LPIN3 Missense_Mutation p.S175F 0.40 deleterious(0.02) possibly_damaging(0.62) TCGA-CV-7568-01 20 42310477 42310477 C T MYBL2 Silent p.F56F 0.33 TCGA-CV-7568-01 20 43056986 43056986 G A HNF4A Missense_Mutation p.D381N 0.31 deleterious(0.02) benign(0.133) TCGA-CV-7568-01 20 43851660 43851660 G A SEMG2 Missense_Mutation p.E463K 0.27 tolerated(0.05) possibly_damaging(0.621) TCGA-CV-7568-01 20 44505937 44505937 G A ZSWIM3 Missense_Mutation p.R247Q 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7568-01 20 45130155 45130155 G A ZNF334 Missense_Mutation p.S608F 0.36 tolerated(0.2) possibly_damaging(0.888) TCGA-CV-7568-01 20 47991509 47991509 G A KCNB1 Silent p.I196I 0.35 TCGA-CV-7568-01 20 48166642 48166642 G A PTGIS Silent p.F53F 0.45 TCGA-CV-7568-01 20 4843526 4843526 C T SLC23A2 Missense_Mutation p.G462R 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 20 50255951 50255951 G A ATP9A Silent p.I533I 0.37 TCGA-CV-7568-01 20 52583479 52583479 G A BCAS1 Missense_Mutation p.P439L 0.35 deleterious(0) possibly_damaging(0.57) TCGA-CV-7568-01 20 53208341 53208341 G A DOK5 Missense_Mutation p.G199E 0.26 deleterious(0.02) probably_damaging(0.962) TCGA-CV-7568-01 20 55803323 55803323 C T BMP7 Silent p.R191R 0.37 TCGA-CV-7568-01 20 55905032 55905032 G A SPO11 Missense_Mutation p.G37R 0.42 tolerated_low_confidence(0.61) benign(0.005) TCGA-CV-7568-01 20 56139322 56139322 G A PCK1 Silent p.K353K 0.42 TCGA-CV-7568-01 20 57429837 57429837 G A GNAS Missense_Mutation p.R506Q 0.50 deleterious_low_confidence(0.05) unknown(0) TCGA-CV-7568-01 20 57769129 57769129 G A ZNF831 Missense_Mutation p.G1019R 0.31 tolerated(0.25) possibly_damaging(0.593) TCGA-CV-7568-01 20 5903718 5903718 G A CHGB Missense_Mutation p.E310K 0.32 tolerated(0.68) possibly_damaging(0.72) TCGA-CV-7568-01 20 60498647 60498647 C T CDH4 Missense_Mutation p.P505S 0.23 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 20 60498648 60498648 C T CDH4 Missense_Mutation p.P505L 0.22 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 20 61039979 61039979 A G GATA5 Silent p.F369F 0.29 TCGA-CV-7568-01 20 61468563 61468563 G A COL9A3 Missense_Mutation p.G578R 0.38 deleterious(0.02) probably_damaging(1) TCGA-CV-7568-01 20 61468564 61468564 G A COL9A3 Missense_Mutation p.G578E 0.39 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 20 62187585 62187585 C T C20orf195 Missense_Mutation p.S190F 0.35 deleterious(0.03) probably_damaging(0.914) TCGA-CV-7568-01 20 62193940 62193940 G A HELZ2 Missense_Mutation p.P2079S 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-CV-7568-01 20 62200787 62200787 C T HELZ2 Missense_Mutation p.G268R 0.18 tolerated(0.84) benign(0.002) TCGA-CV-7568-01 20 62221767 62221767 G A GMEB2 Missense_Mutation p.P423L 0.29 deleterious(0.01) benign(0.359) TCGA-CV-7568-01 20 62221768 62221768 G A GMEB2 Missense_Mutation p.P423S 0.29 deleterious(0.03) benign(0.256) TCGA-CV-7568-01 20 62329919 62329919 C T TNFRSF6B 3'UTR 0.28 TCGA-CV-7568-01 20 62331910 62331910 G A ARFRP1 Intron 0.30 TCGA-CV-7568-01 20 62421395 62421395 C T ZBTB46 Missense_Mutation p.G239E 0.53 tolerated(0.09) benign(0.009) TCGA-CV-7568-01 20 62705289 62705289 C T RGS19 Missense_Mutation p.D191N 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 20 62737767 62737767 C T NPBWR2 Missense_Mutation p.V140M 0.35 tolerated(0.19) benign(0.031) TCGA-CV-7568-01 20 62854480 62854480 T C MYT1 Missense_Mutation p.C805R 0.37 probably_damaging(0.981) TCGA-CV-7568-01 20 62854481 62854481 G T MYT1 Missense_Mutation p.C805F 0.37 probably_damaging(0.949) TCGA-CV-7568-01 20 744617 744617 G A SLC52A3 Missense_Mutation p.P200S 0.29 tolerated(0.34) benign(0.001) TCGA-CV-7568-01 20 744618 744618 G A SLC52A3 Silent p.L199L 0.28 TCGA-CV-7568-01 20 7962880 7962880 G A TMX4 3'UTR 0.49 TCGA-CV-7568-01 20 8678311 8678311 C T PLCB1 Missense_Mutation p.R350C 0.40 deleterious(0) probably_damaging(0.982) TCGA-CV-7568-01 20 9560857 9560857 G A PAK7 Nonsense_Mutation p.Q309* 0.29 TCGA-CV-7568-01 21 10934997 10934997 C T TPTE Missense_Mutation p.E266K 0.33 deleterious(0.02) possibly_damaging(0.775) TCGA-CV-7568-01 21 11047504 11047504 G A BAGE2 RNA 0.08 TCGA-CV-7568-01 21 31015182 31015182 C T GRIK1 Nonsense_Mutation p.W354* 0.67 TCGA-CV-7568-01 21 31015183 31015183 C T GRIK1 Nonsense_Mutation p.W354* 0.68 TCGA-CV-7568-01 21 31538400 31538400 C T CLDN17 Missense_Mutation p.G179E 0.15 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 21 32185275 32185275 G A KRTAP8-1 3'UTR 0.51 TCGA-CV-7568-01 21 35468332 35468332 G A SLC5A3 Missense_Mutation p.D279N 0.68 deleterious(0.01) probably_damaging(0.951) TCGA-CV-7568-01 21 37785504 37785504 G A CHAF1B Missense_Mutation p.G462R 0.82 tolerated(0.51) benign(0.002) TCGA-CV-7568-01 21 38072052 38072052 G A SIM2 Silent p.K2K 0.78 TCGA-CV-7568-01 21 41165472 41165472 C T IGSF5 Missense_Mutation p.L354F 0.65 tolerated(0.09) benign(0) TCGA-CV-7568-01 21 41301051 41301051 C T PCP4 3'UTR 0.09 TCGA-CV-7568-01 21 43979139 43979139 C T SLC37A1 Silent p.L307L 0.73 TCGA-CV-7568-01 21 45819234 45819234 C T TRPM2 Silent p.T706T 0.62 TCGA-CV-7568-01 21 45819235 45819235 C T TRPM2 Missense_Mutation p.R707C 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7568-01 21 45978264 45978264 G A KRTAP10-3 Missense_Mutation p.P112L 0.67 deleterious(0.01) unknown(0) TCGA-CV-7568-01 21 46021343 46021343 C T KRTAP10-7 Silent p.V274V 0.69 TCGA-CV-7568-01 21 46320382 46320382 G A ITGB2 Silent p.I250I 0.71 TCGA-CV-7568-01 21 47349871 47349871 C T PCBP3 Missense_Mutation p.P253L 0.73 tolerated(0.12) benign(0.03) TCGA-CV-7568-01 21 47422152 47422152 G A COL6A1 Nonsense_Mutation p.W696* 0.67 TCGA-CV-7568-01 21 47422153 47422153 G A COL6A1 Nonsense_Mutation p.W696* 0.67 TCGA-CV-7568-01 21 47678977 47678977 G A MCM3AP Missense_Mutation p.R1204C 0.05 tolerated(0.06) probably_damaging(0.996) TCGA-CV-7568-01 21 47678978 47678978 G A MCM3AP Silent p.V1203V 0.05 TCGA-CV-7568-01 21 47692669 47692669 G A MCM3AP Silent p.H757H 0.67 TCGA-CV-7568-01 21 47987622 47987622 C T DIP2A 3'UTR 0.63 TCGA-CV-7568-01 21 47987623 47987623 C T DIP2A 3'UTR 0.65 TCGA-CV-7568-01 22 17472911 17472911 G A GAB4 Silent p.F110F 0.40 TCGA-CV-7568-01 22 17488983 17488983 G A GAB4 Missense_Mutation p.P8S 0.55 possibly_damaging(0.641) TCGA-CV-7568-01 22 18138440 18138440 C T BCL2L13 5'UTR 0.30 TCGA-CV-7568-01 22 18846126 18846126 G A BCRP7 RNA 0.12 TCGA-CV-7568-01 22 19363264 19363264 G A HIRA Silent p.T555T 0.36 TCGA-CV-7568-01 22 20129013 20129013 C T ZDHHC8 Missense_Mutation p.P362L 0.31 tolerated(0.08) benign(0.1) TCGA-CV-7568-01 22 20229530 20229530 G A RTN4R Missense_Mutation p.P376S 0.34 tolerated(0.36) benign(0.441) TCGA-CV-7568-01 22 20457160 20457160 T A RIMBP3 Missense_Mutation p.E1381V 0.32 deleterious(0) benign(0.099) TCGA-CV-7568-01 22 20457162 20457162 C T RIMBP3 Silent p.K1380K 0.32 TCGA-CV-7568-01 22 20761140 20761140 G A ZNF74 Missense_Mutation p.G606E 0.29 tolerated_low_confidence(0.2) benign(0.011) TCGA-CV-7568-01 22 20784021 20784021 G A SCARF2 Silent p.H434H 0.42 TCGA-CV-7568-01 22 21351208 21351208 G C LZTR1 Missense_Mutation p.D787H 0.42 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 22 21351764 21351764 C T LZTR1 3'UTR 0.33 TCGA-CV-7568-01 22 24034784 24034784 C T RGL4 Intron 0.25 TCGA-CV-7568-01 22 24621540 24621540 C G GGT5 Missense_Mutation p.R437P 0.36 tolerated(0.93) benign(0.001) TCGA-CV-7568-01 22 25023356 25023356 C T GGT1 Intron 0.73 TCGA-CV-7568-01 22 26423575 26423575 G A MYO18B Silent p.R2545R 0.31 TCGA-CV-7568-01 22 26688598 26688598 C T SEZ6L Silent p.A107A 0.45 TCGA-CV-7568-01 22 29445853 29445853 T A ZNRF3 Missense_Mutation p.C562S 0.49 tolerated(0.15) possibly_damaging(0.824) TCGA-CV-7568-01 22 29621205 29621205 G A EMID1 Missense_Mutation p.G135S 0.35 tolerated(0.1) benign(0.316) TCGA-CV-7568-01 22 29621206 29621206 G A EMID1 Splice_Site p.X135_splice 0.36 TCGA-CV-7568-01 22 29708406 29708406 C T GAS2L1 3'Flank 0.39 TCGA-CV-7568-01 22 29708407 29708407 C T GAS2L1 3'Flank 0.38 TCGA-CV-7568-01 22 29834826 29834826 G A RFPL1 Missense_Mutation p.G16R 0.36 tolerated_low_confidence(0.17) benign(0.094) TCGA-CV-7568-01 22 29834827 29834827 G A RFPL1 Missense_Mutation p.G16E 0.37 tolerated_low_confidence(0.95) benign(0.002) TCGA-CV-7568-01 22 29837928 29837928 C T RFPL1 Silent p.S257S 0.07 TCGA-CV-7568-01 22 29837951 29837951 C T RFPL1 Missense_Mutation p.S265F 0.35 deleterious(0.05) possibly_damaging(0.74) TCGA-CV-7568-01 22 30416011 30416011 C T MTMR3 Missense_Mutation p.S788F 0.42 tolerated_low_confidence(0.06) benign(0.001) TCGA-CV-7568-01 22 30416043 30416043 G A MTMR3 Missense_Mutation p.E799K 0.47 tolerated_low_confidence(0.27) benign(0.001) TCGA-CV-7568-01 22 30736230 30736230 G A SF3A1 Missense_Mutation p.R444C 0.44 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 22 31536191 31536191 C T PLA2G3 Silent p.K50K 0.27 TCGA-CV-7568-01 22 32586942 32586942 G A RFPL2 Silent p.S318S 0.23 TCGA-CV-7568-01 22 35743270 35743270 C T TOM1 3'UTR 0.39 TCGA-CV-7568-01 22 35783126 35783126 G A HMOX1 Missense_Mutation p.R198K 0.27 tolerated(0.2) benign(0.037) TCGA-CV-7568-01 22 36123124 36123124 G A APOL5 Missense_Mutation p.E337K 0.34 deleterious(0.03) probably_damaging(0.992) TCGA-CV-7568-01 22 36537676 36537676 C T APOL3 Missense_Mutation p.D261N 0.38 tolerated(0.33) probably_damaging(0.996) TCGA-CV-7568-01 22 37273894 37273894 G A NCF4 3'UTR 0.33 TCGA-CV-7568-01 22 37325496 37325496 C T CSF2RB Silent p.F148F 0.30 TCGA-CV-7568-01 22 37499343 37499343 G A TMPRSS6 Missense_Mutation p.R48W 0.43 deleterious(0) possibly_damaging(0.704) TCGA-CV-7568-01 22 38212608 38212608 C T GCAT Silent p.V407V 0.33 TCGA-CV-7568-01 22 38219451 38219451 G A GALR3 Missense_Mutation p.G13E 0.37 tolerated(0.38) benign(0.008) TCGA-CV-7568-01 22 38251636 38251636 C T EIF3L Missense_Mutation p.P120S 0.38 tolerated(0.1) benign(0.009) TCGA-CV-7568-01 22 39263055 39263055 G A CBX6 Missense_Mutation p.P133L 0.42 deleterious(0) possibly_damaging(0.908) TCGA-CV-7568-01 22 39711393 39711393 G A RPL3 Silent p.T223T 0.47 TCGA-CV-7568-01 22 40662488 40662488 G A TNRC6B Missense_Mutation p.E752K 0.25 tolerated(0.92) benign(0.097) TCGA-CV-7568-01 22 40827457 40827457 G A MKL1 Missense_Mutation p.R31C 0.36 deleterious(0) benign(0.005) TCGA-CV-7568-01 22 41625593 41625593 G A L3MBTL2 Silent p.K646K 0.37 TCGA-CV-7568-01 22 41652030 41652030 G A RANGAP1 Silent p.S356S 0.43 TCGA-CV-7568-01 22 42456925 42456925 C T NAGA Intron 0.43 TCGA-CV-7568-01 22 43576771 43576771 G A TTLL12 Nonsense_Mutation p.Q175* 0.38 TCGA-CV-7568-01 22 43831035 43831035 G A MPPED1 Silent p.T102T 0.30 TCGA-CV-7568-01 22 44022347 44022347 T C EFCAB6 Silent p.E815E 0.22 TCGA-CV-7568-01 22 44028010 44028010 G A EFCAB6 Missense_Mutation p.P736L 0.35 deleterious(0.01) probably_damaging(0.911) TCGA-CV-7568-01 22 44286942 44286942 C T PNPLA5 Silent p.Q142Q 0.36 TCGA-CV-7568-01 22 44385100 44385100 C T SAMM50 Silent p.F395F 0.43 TCGA-CV-7568-01 22 45132948 45132948 G A PRR5 Missense_Mutation p.E353K 0.33 tolerated_low_confidence(0.45) benign(0.001) TCGA-CV-7568-01 22 46742369 46742369 G A TRMU Missense_Mutation p.E136K 0.37 deleterious(0.05) benign(0.201) TCGA-CV-7568-01 22 50469179 50469179 C T TTLL8 Missense_Mutation p.G644E 0.27 deleterious(0.04) possibly_damaging(0.677) TCGA-CV-7568-01 22 50885811 50885811 C T SBF1 Silent p.V1841V 0.28 TCGA-CV-7568-01 22 50899028 50899028 G A SBF1 Silent p.T1027T 0.35 TCGA-CV-7568-01 22 50926477 50926477 G A MIOX Missense_Mutation p.D114N 0.45 deleterious(0) probably_damaging(0.944) TCGA-CV-7568-01 2 100623133 100623133 C T AFF3 Silent p.K303K 0.46 TCGA-CV-7568-01 2 100910724 100910724 C T LONRF2 Missense_Mutation p.R575Q 0.30 tolerated(1) benign(0.048) TCGA-CV-7568-01 2 101881467 101881467 C T CNOT11 Silent p.A331A 0.31 TCGA-CV-7568-01 2 102959584 102959584 A C IL1RL1 Missense_Mutation p.K257N 0.38 tolerated(0.65) benign(0.002) TCGA-CV-7568-01 2 103067347 103067347 G A IL18RAP Nonsense_Mutation p.W417* 0.38 TCGA-CV-7568-01 2 103068477 103068477 C T IL18RAP Missense_Mutation p.P546S 0.40 tolerated(0.3) benign(0.038) TCGA-CV-7568-01 2 108488496 108488496 G A RGPD4 Missense_Mutation p.E1346K 0.37 tolerated(0.06) benign(0.161) TCGA-CV-7568-01 2 108881362 108881362 C T SULT1C3 Missense_Mutation p.H235Y 0.41 tolerated(0.08) benign(0.202) TCGA-CV-7568-01 2 109399034 109399034 G T RANBP2 Missense_Mutation p.V3029L 0.44 tolerated(1) benign(0.101) TCGA-CV-7568-01 2 109964286 109964286 C T SH3RF3 Missense_Mutation p.P244S 0.26 deleterious(0) probably_damaging(0.954) TCGA-CV-7568-01 2 113885246 113885246 C T IL1RN Intron 0.40 TCGA-CV-7568-01 2 116510843 116510843 C T DPP10 Silent p.V352V 0.36 TCGA-CV-7568-01 2 116598334 116598334 C T DPP10 Missense_Mutation p.H735Y 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 2 11716512 11716512 A G GREB1 Missense_Mutation p.K163R 0.31 tolerated(0.38) benign(0.248) TCGA-CV-7568-01 2 11774278 11774278 G A GREB1 Silent p.R1671R 0.31 TCGA-CV-7568-01 2 120362333 120362333 C T PCDP1 Nonsense_Mutation p.R293* 0.32 TCGA-CV-7568-01 2 120395869 120395869 C T PCDP1 Missense_Mutation p.P670L 0.38 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 2 121742133 121742133 C T GLI2 Silent p.G590G 0.47 TCGA-CV-7568-01 2 122104659 122104659 G A CLASP1 Silent p.I1495I 0.27 TCGA-CV-7568-01 2 122125366 122125366 G A CLASP1 Silent p.G1228G 0.32 TCGA-CV-7568-01 2 127825806 127825806 G A BIN1 Missense_Mutation p.A182V 0.35 deleterious(0.03) probably_damaging(0.99) TCGA-CV-7568-01 2 128324382 128324382 G A MYO7B Silent p.R150R 0.37 TCGA-CV-7568-01 2 128415076 128415076 G A LIMS2 Silent p.P48P 0.45 TCGA-CV-7568-01 2 130831673 130831673 G A POTEF 3'UTR 0.33 TCGA-CV-7568-01 2 131117186 131117186 C T PTPN18 Silent p.I127I 0.20 TCGA-CV-7568-01 2 132021425 132021425 G A POTEE Silent p.E799E 0.36 TCGA-CV-7568-01 2 133403028 133403028 G A GPR39 Missense_Mutation p.R404K 0.26 tolerated(0.66) benign(0.006) TCGA-CV-7568-01 2 133486462 133486462 C T NCKAP5 Missense_Mutation p.G1836E 0.39 tolerated(1) benign(0) TCGA-CV-7568-01 2 133540565 133540565 G A NCKAP5 Silent p.A1273A 0.38 TCGA-CV-7568-01 2 140997101 140997101 C T LRP1B Missense_Mutation p.R4442K 0.35 benign(0.067) TCGA-CV-7568-01 2 141055433 141055433 C T LRP1B Missense_Mutation p.G4304E 0.37 probably_damaging(0.931) TCGA-CV-7568-01 2 141243018 141243018 C T LRP1B Missense_Mutation p.E3107K 0.29 benign(0.292) TCGA-CV-7568-01 2 141747122 141747122 C T LRP1B Missense_Mutation p.E917K 0.55 probably_damaging(0.926) TCGA-CV-7568-01 2 144194581 144194581 G A ARHGAP15 Missense_Mutation p.E225K 0.33 tolerated(0.11) benign(0.008) TCGA-CV-7568-01 2 152497159 152497159 G A NEB Missense_Mutation p.R2799C 0.34 benign(0.015) TCGA-CV-7568-01 2 15519940 15519940 G A NBAS Missense_Mutation p.L1126F 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 2 15555680 15555680 G A NBAS Missense_Mutation p.S976F 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-CV-7568-01 2 15567889 15567889 G A NBAS Missense_Mutation p.P790L 0.29 deleterious(0.01) benign(0.072) TCGA-CV-7568-01 2 15607790 15607790 G A NBAS Silent p.S672S 0.26 TCGA-CV-7568-01 2 15607791 15607791 G A NBAS Missense_Mutation p.S672F 0.26 deleterious(0) benign(0.429) TCGA-CV-7568-01 2 15737538 15737538 C T DDX1 Silent p.L68L 0.43 TCGA-CV-7568-01 2 158177885 158177885 G A ERMN Silent p.S264S 0.36 TCGA-CV-7568-01 2 160086254 160086254 C T TANC1 Silent p.S1439S 0.39 TCGA-CV-7568-01 2 160807911 160807911 G A PLA2R1 Silent p.F1160F 0.34 TCGA-CV-7568-01 2 162903514 162903514 G A DPP4 Missense_Mutation p.H66Y 0.42 tolerated(0.26) benign(0.001) TCGA-CV-7568-01 2 166210777 166210777 G A SCN2A Missense_Mutation p.E999K 0.37 deleterious(0.02) possibly_damaging(0.767) TCGA-CV-7568-01 2 166533061 166533061 C T CSRNP3 Silent p.C216C 0.33 TCGA-CV-7568-01 2 166872124 166872124 G A SCN1A Silent p.F1181F 0.28 TCGA-CV-7568-01 2 167301368 167301368 G A SCN7A Silent p.F510F 0.33 TCGA-CV-7568-01 2 168100278 168100278 C T XIRP2 Silent p.V792V 0.33 TCGA-CV-7568-01 2 168100279 168100279 C T XIRP2 Nonsense_Mutation p.R793* 0.34 TCGA-CV-7568-01 2 168115396 168115396 G A XIRP2 3'UTR 0.32 TCGA-CV-7568-01 2 168115530 168115530 G A XIRP2 3'UTR 0.35 TCGA-CV-7568-01 2 170150732 170150732 C T LRP2 Missense_Mutation p.G193E 0.42 possibly_damaging(0.651) TCGA-CV-7568-01 2 170177351 170177351 G A LRP2 Silent p.I41I 0.38 TCGA-CV-7568-01 2 171248046 171248046 C T MYO3B Missense_Mutation p.H532Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 2 172582533 172582533 T G DYNC1I2 Missense_Mutation p.S238A 0.42 tolerated(1) benign(0.001) TCGA-CV-7568-01 2 177054765 177054765 C T HOXD1 Silent p.A294A 0.38 TCGA-CV-7568-01 2 179413404 179413404 C T TTN Silent p.V30983V 0.39 TCGA-CV-7568-01 2 179414056 179414056 C T TTN Nonsense_Mutation p.W30766* 0.23 TCGA-CV-7568-01 2 179416808 179416808 C T TTN Silent p.K30273K 0.42 TCGA-CV-7568-01 2 179437888 179437888 G A TTN Missense_Mutation p.P24324L 0.36 TCGA-CV-7568-01 2 179442205 179442205 T G TTN Missense_Mutation p.K22953Q 0.52 TCGA-CV-7568-01 2 179447251 179447251 C T TTN Missense_Mutation p.E21978K 0.45 TCGA-CV-7568-01 2 179467060 179467060 C T TTN Missense_Mutation p.E18357K 0.23 TCGA-CV-7568-01 2 179489447 179489447 C A TTN Nonsense_Mutation p.E14854* 0.44 TCGA-CV-7568-01 2 179499246 179499246 C T TTN Missense_Mutation p.G14088R 0.40 TCGA-CV-7568-01 2 179500735 179500735 C T TTN Missense_Mutation p.E13855K 0.42 TCGA-CV-7568-01 2 179544117 179544117 C T TTN Missense_Mutation p.E11231K 0.34 TCGA-CV-7568-01 2 179577493 179577493 C T TTN Missense_Mutation p.G9087R 0.22 TCGA-CV-7568-01 2 179584295 179584295 G A TTN Missense_Mutation p.S7975F 0.43 TCGA-CV-7568-01 2 179585147 179585147 C T TTN Missense_Mutation p.G7781E 0.34 TCGA-CV-7568-01 2 179596984 179596984 G A TTN Missense_Mutation p.P5571L 0.27 TCGA-CV-7568-01 2 179596985 179596985 G A TTN Missense_Mutation p.P5571S 0.28 TCGA-CV-7568-01 2 179598474 179598474 G A TTN Silent p.I5214I 0.39 TCGA-CV-7568-01 2 179600389 179600389 G A TTN Silent p.L4928L 0.38 TCGA-CV-7568-01 2 179604010 179604010 G A TTN Silent p.F4650F 0.30 TCGA-CV-7568-01 2 179606172 179606172 C T TTN Missense_Mutation p.E3930K 0.39 TCGA-CV-7568-01 2 179606173 179606173 C T TTN Silent p.L3929L 0.38 TCGA-CV-7568-01 2 179614852 179614852 G A TTN Intron 0.34 TCGA-CV-7568-01 2 179633554 179633554 C T TTN Silent p.K3003K 0.31 TCGA-CV-7568-01 2 179639648 179639648 C T TTN Missense_Mutation p.G2264S 0.43 TCGA-CV-7568-01 2 179644006 179644006 C T TTN Missense_Mutation p.G1305R 0.24 TCGA-CV-7568-01 2 180008406 180008406 G A SESTD1 Silent p.L254L 0.30 TCGA-CV-7568-01 2 18113857 18113857 C T KCNS3 3'UTR 0.38 TCGA-CV-7568-01 2 18113858 18113858 C T KCNS3 3'UTR 0.38 TCGA-CV-7568-01 2 183099206 183099206 G A PDE1A Missense_Mutation p.H140Y 0.46 tolerated(0.05) benign(0.377) TCGA-CV-7568-01 2 183104926 183104926 C T PDE1A Silent p.R103R 0.34 TCGA-CV-7568-01 2 185800779 185800779 C T ZNF804A Missense_Mutation p.P219L 0.43 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 2 187627043 187627043 C T FAM171B Silent p.L658L 0.33 TCGA-CV-7568-01 2 190611141 190611141 C T ANKAR Nonsense_Mutation p.Q1365* 0.31 TCGA-CV-7568-01 2 190719164 190719164 C T PMS1 Missense_Mutation p.P389L 0.43 tolerated(0.14) benign(0) TCGA-CV-7568-01 2 197021263 197021263 G A STK17B Missense_Mutation p.H79Y 0.40 deleterious(0) benign(0.437) TCGA-CV-7568-01 2 197182021 197182021 C T HECW2 Missense_Mutation p.R804K 0.24 tolerated(0.1) benign(0.236) TCGA-CV-7568-01 2 198950750 198950750 G A PLCL1 Missense_Mutation p.E837K 0.29 tolerated(0.16) benign(0.01) TCGA-CV-7568-01 2 202003046 202003046 C T CFLAR Intron 0.30 TCGA-CV-7568-01 2 202003047 202003047 C T CFLAR Intron 0.26 TCGA-CV-7568-01 2 202344962 202344962 A G STRADB 3'UTR 0.38 TCGA-CV-7568-01 2 202677255 202677255 G A CDK15 Missense_Mutation p.E140K 0.42 deleterious(0) possibly_damaging(0.666) TCGA-CV-7568-01 2 20463022 20463022 G A PUM2 Silent p.F719F 0.35 TCGA-CV-7568-01 2 207171881 207171881 C T ZDBF2 Missense_Mutation p.H877Y 0.26 tolerated(1) benign(0) TCGA-CV-7568-01 2 207174284 207174284 C T ZDBF2 Missense_Mutation p.H1678Y 0.73 tolerated(0.16) benign(0.152) TCGA-CV-7568-01 2 209045982 209045982 C T C2orf80 Missense_Mutation p.R85Q 0.76 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 2 209167006 209167006 C T PIKFYVE Missense_Mutation p.R417C 0.65 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7568-01 2 209358364 209358364 G A PTH2R Missense_Mutation p.E545K 0.73 tolerated(0.12) benign(0.01) TCGA-CV-7568-01 2 210640614 210640614 C T UNC80 Missense_Mutation p.S48F 0.61 probably_damaging(0.943) TCGA-CV-7568-01 2 210650808 210650808 C T UNC80 Missense_Mutation p.R207C 0.62 probably_damaging(0.975) TCGA-CV-7568-01 2 210658584 210658584 G A UNC80 Splice_Site p.X313_splice 0.56 TCGA-CV-7568-01 2 211168340 211168340 G A MYL1 Intron 0.62 TCGA-CV-7568-01 2 21229160 21229160 C G APOB Missense_Mutation p.R3527P 0.36 probably_damaging(0.999) TCGA-CV-7568-01 2 217148396 217148396 A G MARCH4 Silent p.P191P 0.74 TCGA-CV-7568-01 2 219289047 219289047 C T VIL1 Silent p.F41F 0.63 TCGA-CV-7568-01 2 219563390 219563390 C T STK36 Silent p.A1041A 0.71 TCGA-CV-7568-01 2 219563820 219563820 C T STK36 Missense_Mutation p.P1185S 0.61 tolerated(0.57) benign(0.009) TCGA-CV-7568-01 2 220431779 220431779 G A OBSL1 Missense_Mutation p.S636F 0.33 deleterious(0) probably_damaging(0.986) TCGA-CV-7568-01 2 228157944 228157944 G A COL4A3 Missense_Mutation p.G1083E 0.54 unknown(0) TCGA-CV-7568-01 2 229890387 229890387 G A PID1 Silent p.S236S 0.61 TCGA-CV-7568-01 2 231380099 231380099 C T SP100 Intron 0.50 TCGA-CV-7568-01 2 231380100 231380100 C T SP100 Intron 0.49 TCGA-CV-7568-01 2 231380268 231380268 G A SP100 Intron 0.62 TCGA-CV-7568-01 2 234229349 234229349 G A SAG Silent p.R85R 0.33 TCGA-CV-7568-01 2 234229350 234229350 G A SAG Missense_Mutation p.D86N 0.33 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 2 234871983 234871983 C T TRPM8 Nonsense_Mutation p.Q571* 0.65 TCGA-CV-7568-01 2 238266485 238266485 C T COL6A3 Missense_Mutation p.G2171E 0.64 possibly_damaging(0.776) TCGA-CV-7568-01 2 238296310 238296310 C T COL6A3 Silent p.G409G 0.41 TCGA-CV-7568-01 2 241465802 241465802 G A ANKMY1 Silent p.G249G 0.71 TCGA-CV-7568-01 2 241710442 241710442 G A KIF1A Silent p.L429L 0.67 TCGA-CV-7568-01 2 241726675 241726675 G A KIF1A Missense_Mutation p.S141F 0.70 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 2 24929891 24929891 C T NCOA1 Missense_Mutation p.P518S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7568-01 2 25384196 25384196 C T POMC Silent p.R186R 0.39 TCGA-CV-7568-01 2 25470969 25470969 G A DNMT3A Silent p.P264P 0.45 TCGA-CV-7568-01 2 26667171 26667171 C T DRC1 Silent p.T370T 0.48 TCGA-CV-7568-01 2 26677573 26677573 G A DRC1 Missense_Mutation p.E660K 0.40 deleterious(0.03) benign(0.02) TCGA-CV-7568-01 2 26707344 26707344 C T OTOF Silent p.E401E 0.43 TCGA-CV-7568-01 2 27167532 27167532 G A DPYSL5 Silent p.K483K 0.52 TCGA-CV-7568-01 2 27306172 27306172 G A EMILIN1 Missense_Mutation p.G578E 0.46 probably_damaging(1) TCGA-CV-7568-01 2 27306173 27306173 G A EMILIN1 Silent p.G578G 0.45 TCGA-CV-7568-01 2 27596751 27596751 G A SNX17 Silent p.E115E 0.23 TCGA-CV-7568-01 2 27596752 27596752 G A SNX17 Missense_Mutation p.E116K 0.23 tolerated(0.13) benign(0.206) TCGA-CV-7568-01 2 27715262 27715262 C T FNDC4 3'UTR 0.41 TCGA-CV-7568-01 2 27715552 27715552 C T FNDC4 Missense_Mutation p.R217K 0.36 tolerated(0.47) benign(0.016) TCGA-CV-7568-01 2 27730568 27730568 C T GCKR Silent p.S388S 0.29 TCGA-CV-7568-01 2 27802341 27802341 G A C2orf16 Missense_Mutation p.G968S 0.26 tolerated(0.23) possibly_damaging(0.691) TCGA-CV-7568-01 2 27802342 27802342 G A C2orf16 Missense_Mutation p.G968D 0.26 tolerated(0.11) possibly_damaging(0.663) TCGA-CV-7568-01 2 27823642 27823642 C T ZNF512 Missense_Mutation p.T181I 0.38 deleterious(0) probably_damaging(0.991) TCGA-CV-7568-01 2 27823643 27823643 C T ZNF512 Silent p.T181T 0.38 TCGA-CV-7568-01 2 28004519 28004519 T G RBKS Missense_Mutation p.Y311S 0.47 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 2 28627144 28627144 C T FOSL2 Silent p.V91V 0.40 TCGA-CV-7568-01 2 28627145 28627145 C T FOSL2 Missense_Mutation p.P92S 0.39 tolerated(0.66) benign(0.006) TCGA-CV-7568-01 2 28826894 28826894 G A PLB1 Missense_Mutation p.A946T 0.41 tolerated(0.45) benign(0.043) TCGA-CV-7568-01 2 29158443 29158443 C T WDR43 Silent p.P498P 0.35 TCGA-CV-7568-01 2 29245103 29245103 G A FAM179A Silent p.K480K 0.36 TCGA-CV-7568-01 2 29295426 29295426 C T C2orf71 Missense_Mutation p.E568K 0.33 deleterious(0) probably_damaging(0.975) TCGA-CV-7568-01 2 29543630 29543630 G A ALK Silent p.F511F 0.35 TCGA-CV-7568-01 2 30381531 30381531 C T YPEL5 Missense_Mutation p.T63I 0.47 deleterious(0.02) probably_damaging(1) TCGA-CV-7568-01 2 32475021 32475021 C T NLRC4 Missense_Mutation p.E638K 0.40 tolerated(0.38) benign(0.002) TCGA-CV-7568-01 2 32824950 32824950 C T BIRC6 Missense_Mutation p.L4659F 0.54 probably_damaging(0.999) TCGA-CV-7568-01 2 33246016 33246016 C T LTBP1 Silent p.L202L 0.37 TCGA-CV-7568-01 2 33246017 33246017 C T LTBP1 Missense_Mutation p.R203W 0.38 deleterious(0) possibly_damaging(0.891) TCGA-CV-7568-01 2 33768606 33768606 C T RASGRP3 Missense_Mutation p.H436Y 0.16 tolerated(0.59) benign(0.05) TCGA-CV-7568-01 2 3730584 3730584 G A ALLC Missense_Mutation p.G144E 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7568-01 2 37473323 37473323 G A NDUFAF7 Silent p.K307K 0.32 TCGA-CV-7568-01 2 38908571 38908571 C T GALM Silent p.A165A 0.40 TCGA-CV-7568-01 2 39552765 39552765 G A MAP4K3 Missense_Mutation p.P271L 0.33 deleterious(0.05) probably_damaging(0.993) TCGA-CV-7568-01 2 39552766 39552766 G A MAP4K3 Missense_Mutation p.P271S 0.33 tolerated(0.21) probably_damaging(0.995) TCGA-CV-7568-01 2 45169510 45169510 G A SIX3 Silent p.P89P 0.31 TCGA-CV-7568-01 2 45169576 45169576 C T SIX3 Silent p.F111F 0.33 TCGA-CV-7568-01 2 45829214 45829214 G A SRBD1 Missense_Mutation p.A30V 0.27 tolerated_low_confidence(0.1) benign(0.075) TCGA-CV-7568-01 2 48915041 48915041 C T LHCGR Missense_Mutation p.R632K 0.39 tolerated(0.34) benign(0.145) TCGA-CV-7568-01 2 49247274 49247274 C T FSHR Missense_Mutation p.E84K 0.39 tolerated(0.1) benign(0.087) TCGA-CV-7568-01 2 51255103 51255103 G A NRXN1 Silent p.L103L 0.37 TCGA-CV-7568-01 2 54175661 54175661 G A PSME4 Missense_Mutation p.L133F 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-CV-7568-01 2 56599549 56599549 C T CCDC85A Missense_Mutation p.A463V 0.50 tolerated_low_confidence(0.51) benign(0.002) TCGA-CV-7568-01 2 56599550 56599550 C T CCDC85A Silent p.A463A 0.50 TCGA-CV-7568-01 2 5833255 5833255 C A SOX11 Silent p.A134A 0.38 TCGA-CV-7568-01 2 61149648 61149648 C T REL Missense_Mutation p.P613L 0.20 tolerated_low_confidence(0.07) benign(0.021) TCGA-CV-7568-01 2 63092028 63092028 G A EHBP1 Missense_Mutation p.R342K 0.35 tolerated(0.38) benign(0.2) TCGA-CV-7568-01 2 63661028 63661028 C A WDPCP Nonsense_Mutation p.E226* 0.29 TCGA-CV-7568-01 2 64141332 64141340 AGACGAGTA - VPS54 In_Frame_Del p.T771_L773del 0.16 TCGA-CV-7568-01 2 65315800 65315800 G A RAB1A Missense_Mutation p.P149S 0.50 tolerated(0.12) benign(0.261) TCGA-CV-7568-01 2 69207908 69207908 C T GKN1 Silent p.L185L 0.40 TCGA-CV-7568-01 2 70162484 70162484 C T MXD1 Missense_Mutation p.R69W 0.33 deleterious(0) probably_damaging(0.984) TCGA-CV-7568-01 2 7036163 7036163 C T RSAD2 3'UTR 0.42 TCGA-CV-7568-01 2 71206395 71206395 C T ANKRD53 Silent p.F113F 0.44 TCGA-CV-7568-01 2 71838717 71838717 G A DYSF Silent p.K1394K 0.23 TCGA-CV-7568-01 2 73302520 73302520 G A RAB11FIP5 3'UTR 0.36 TCGA-CV-7568-01 2 73302521 73302521 G A RAB11FIP5 3'UTR 0.29 TCGA-CV-7568-01 2 74320791 74320791 G A TET3 Missense_Mutation p.V954M 0.38 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 2 74699807 74699807 G A MRPL53 5'UTR 0.28 TCGA-CV-7568-01 2 74742935 74742935 G A TLX2 Silent p.K192K 0.34 TCGA-CV-7568-01 2 74783947 74783947 G A DOK1 Silent p.K384K 0.38 TCGA-CV-7568-01 2 77746081 77746081 G A LRRTM4 Missense_Mutation p.S305F 0.39 deleterious(0) possibly_damaging(0.776) TCGA-CV-7568-01 2 77746694 77746694 C T LRRTM4 Missense_Mutation p.D101N 0.28 deleterious(0.04) probably_damaging(1) TCGA-CV-7568-01 2 79255435 79255435 G A REG3G 3'UTR 0.25 TCGA-CV-7568-01 2 79312255 79312255 G A REG1B 3'UTR 0.25 TCGA-CV-7568-01 2 79349131 79349131 G A REG1A Missense_Mutation p.M67I 0.31 tolerated(0.15) benign(0.109) TCGA-CV-7568-01 2 80530926 80530926 C T LRRTM1 Missense_Mutation p.G7S 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7568-01 2 80530927 80530927 G A LRRTM1 Silent p.L6L 0.38 TCGA-CV-7568-01 2 80646673 80646673 G T CTNNA2 Nonsense_Mutation p.E413* 0.34 TCGA-CV-7568-01 2 85536504 85536504 C T TCF7L1 Silent p.F562F 0.40 TCGA-CV-7568-01 2 86071528 86071528 G A ST3GAL5 Silent p.G333G 0.42 TCGA-CV-7568-01 2 87140966 87140966 C T RGPD1 5'Flank 0.77 TCGA-CV-7568-01 2 88327774 88327774 G A KRCC1 Silent p.Y103Y 0.39 TCGA-CV-7568-01 2 88425817 88425817 C T FABP1 Missense_Mutation p.E40K 0.35 deleterious(0.02) possibly_damaging(0.684) TCGA-CV-7568-01 2 89278455 89278455 C T IGKV3-7 Missense_Mutation p.D17N 0.33 deleterious(0.01) benign(0.024) TCGA-CV-7568-01 2 89513367 89513367 G A IGKV1-27 Missense_Mutation p.P6S 0.33 tolerated(0.05) benign(0.256) TCGA-CV-7568-01 2 9022664 9022664 G A MBOAT2 Silent p.S161S 0.40 TCGA-CV-7568-01 2 90260085 90260085 G A IGKV1D-8 Missense_Mutation p.G63E 0.36 deleterious(0.02) possibly_damaging(0.619) TCGA-CV-7568-01 2 96919664 96919664 G A TMEM127 Missense_Mutation p.P200L 0.36 tolerated(0.11) probably_damaging(0.998) TCGA-CV-7568-01 2 97217885 97217885 C T ARID5A Silent p.A540A 0.35 TCGA-CV-7568-01 2 98382961 98382961 C T TMEM131 Missense_Mutation p.R1518Q 0.42 deleterious_low_confidence(0) benign(0.289) TCGA-CV-7568-01 2 98994154 98994154 C T CNGA3 Missense_Mutation p.H36Y 0.33 tolerated_low_confidence(1) benign(0.248) TCGA-CV-7568-01 2 99013661 99013661 C T CNGA3 Silent p.P676P 0.33 TCGA-CV-7568-01 2 99681424 99681424 G A TSGA10 Missense_Mutation p.S461F 0.51 tolerated(0.15) possibly_damaging(0.902) TCGA-CV-7568-01 2 99860373 99860373 G A LYG2 Intron 0.25 TCGA-CV-7568-01 3 100058674 100058674 C T NIT2 Missense_Mutation p.P48S 0.21 deleterious(0.02) possibly_damaging(0.615) TCGA-CV-7568-01 3 100074063 100074063 T A NIT2 Missense_Mutation p.F261Y 0.42 tolerated(1) benign(0) TCGA-CV-7568-01 3 10105521 10105521 C T FANCD2 Missense_Mutation p.P625S 0.37 tolerated(0.1) possibly_damaging(0.455) TCGA-CV-7568-01 3 101571959 101571959 G A NFKBIZ Missense_Mutation p.G197R 0.37 tolerated_low_confidence(0.12) benign(0.336) TCGA-CV-7568-01 3 101571960 101571960 G A NFKBIZ Missense_Mutation p.G197E 0.37 tolerated_low_confidence(0.15) benign(0.097) TCGA-CV-7568-01 3 105586348 105586348 A T CBLB Missense_Mutation p.I25N 0.48 deleterious(0) possibly_damaging(0.548) TCGA-CV-7568-01 3 108195336 108195336 C T MYH15 Missense_Mutation p.G401S 0.42 deleterious(0.05) possibly_damaging(0.719) TCGA-CV-7568-01 3 11067193 11067193 G A SLC6A1 Missense_Mutation p.G258E 0.25 deleterious(0) possibly_damaging(0.627) TCGA-CV-7568-01 3 11072908 11072908 G A SLC6A1 Missense_Mutation p.G457S 0.37 deleterious(0.01) possibly_damaging(0.687) TCGA-CV-7568-01 3 111564747 111564747 C T PLCXD2 3'UTR 0.38 TCGA-CV-7568-01 3 111603463 111603463 G A PHLDB2 Nonsense_Mutation p.W180* 0.38 TCGA-CV-7568-01 3 111918276 111918276 C T SLC9C1 Silent p.V805V 0.37 TCGA-CV-7568-01 3 112357969 112357969 C T CCDC80 Missense_Mutation p.D262N 0.37 deleterious(0) probably_damaging(0.948) TCGA-CV-7568-01 3 112564562 112564562 G A CD200R1L Missense_Mutation p.P4S 0.29 tolerated(0.72) benign(0) TCGA-CV-7568-01 3 112709827 112709827 C T GTPBP8 5'UTR 0.33 TCGA-CV-7568-01 3 113377932 113377932 G A KIAA2018 Missense_Mutation p.S866F 0.37 possibly_damaging(0.534) TCGA-CV-7568-01 3 113677528 113677528 C T ZDHHC23 Intron 0.39 TCGA-CV-7568-01 3 113723455 113723455 C T KIAA1407 Intron 0.35 TCGA-CV-7568-01 3 113955834 113955834 G A ZNF80 Missense_Mutation p.H30Y 0.33 tolerated(0.44) benign(0.001) TCGA-CV-7568-01 3 118621622 118621622 G A IGSF11 Silent p.F347F 0.38 TCGA-CV-7568-01 3 11885623 11885623 C T TAMM41 Silent p.L66L 0.50 TCGA-CV-7568-01 3 121981200 121981200 G A CASR Missense_Mutation p.G440R 0.41 deleterious(0.02) probably_damaging(1) TCGA-CV-7568-01 3 122634365 122634365 C A SEMA5B Missense_Mutation p.R691L 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7568-01 3 122808107 122808107 C T PDIA5 Silent p.T45T 0.36 TCGA-CV-7568-01 3 123946878 123946878 C T KALRN Missense_Mutation p.P37S 0.37 tolerated(0.06) benign(0.259) TCGA-CV-7568-01 3 126268910 126268910 G A C3orf22 Missense_Mutation p.P76L 0.39 deleterious(0) benign(0.026) TCGA-CV-7568-01 3 128348886 128348886 T A RPN1 Missense_Mutation p.E315V 0.30 deleterious(0) probably_damaging(0.968) TCGA-CV-7568-01 3 128976644 128976644 C T COPG1 Missense_Mutation p.A271V 0.38 deleterious(0.01) possibly_damaging(0.872) TCGA-CV-7568-01 3 128976645 128976645 C T COPG1 Silent p.A271A 0.37 TCGA-CV-7568-01 3 129292537 129292537 C T PLXND1 Missense_Mutation p.G913R 0.41 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 3 130368167 130368167 C T COL6A6 Missense_Mutation p.P1832S 0.26 tolerated(0.51) probably_damaging(0.999) TCGA-CV-7568-01 3 130733106 130733106 C T ASTE1 Missense_Mutation p.R612K 0.37 tolerated(1) benign(0) TCGA-CV-7568-01 3 132207165 132207165 C T DNAJC13 Silent p.I1097I 0.35 TCGA-CV-7568-01 3 132441206 132441206 C T NPHP3 5'UTR 0.60 TCGA-CV-7568-01 3 133347419 133347419 C T TOPBP1 Silent p.E893E 0.38 TCGA-CV-7568-01 3 133538558 133538558 T C SRPRB Missense_Mutation p.V255A 0.39 tolerated(0.42) benign(0) TCGA-CV-7568-01 3 1339609 1339609 G A CNTN6 Missense_Mutation p.R232H 0.28 tolerated(0.56) benign(0.091) TCGA-CV-7568-01 3 134322702 134322702 G A KY Missense_Mutation p.P569S 0.21 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 3 134670708 134670708 C T EPHB1 Missense_Mutation p.P207S 0.35 tolerated(0.09) benign(0.285) TCGA-CV-7568-01 3 135720858 135720858 C A PPP2R3A Missense_Mutation p.S173Y 0.37 deleterious_low_confidence(0) benign(0.424) TCGA-CV-7568-01 3 135721087 135721087 C T PPP2R3A Silent p.I249I 0.41 TCGA-CV-7568-01 3 136141885 136141885 A C STAG1 Missense_Mutation p.V551G 0.41 tolerated(0.49) possibly_damaging(0.905) TCGA-CV-7568-01 3 138178864 138178864 C T ESYT3 Silent p.F242F 0.33 TCGA-CV-7568-01 3 138195306 138195306 G A ESYT3 Missense_Mutation p.E866K 0.31 deleterious(0.02) benign(0.007) TCGA-CV-7568-01 3 13860791 13860791 C T WNT7A Missense_Mutation p.E234K 0.54 tolerated(0.87) benign(0.005) TCGA-CV-7568-01 3 13916522 13916522 G T WNT7A Missense_Mutation p.Q74K 0.37 tolerated(0.06) benign(0.394) TCGA-CV-7568-01 3 1414031 1414031 G A CNTN6 Missense_Mutation p.G514D 0.37 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 3 1414581 1414581 C T CNTN6 Silent p.L576L 0.37 TCGA-CV-7568-01 3 142525009 142525009 C T TRPC1 Nonsense_Mutation p.R772* 0.36 TCGA-CV-7568-01 3 14508063 14508063 C T SLC6A6 Silent p.L258L 0.35 TCGA-CV-7568-01 3 148563319 148563319 C T CPB1 Missense_Mutation p.S296F 0.30 tolerated(0.36) probably_damaging(0.952) TCGA-CV-7568-01 3 148599358 148599358 G A CPA3 Missense_Mutation p.R209Q 0.33 tolerated(1) benign(0.019) TCGA-CV-7568-01 3 148786056 148786056 C T HLTF Missense_Mutation p.E321K 0.33 tolerated(0.18) benign(0.012) TCGA-CV-7568-01 3 15115502 15115502 G T ZFYVE20 Silent p.P714P 0.35 TCGA-CV-7568-01 3 155199305 155199305 G A PLCH1 Nonsense_Mutation p.Q1512* 0.39 TCGA-CV-7568-01 3 155199306 155199306 G A PLCH1 Silent p.Y1511Y 0.41 TCGA-CV-7568-01 3 155200384 155200384 G A PLCH1 Missense_Mutation p.S1152F 0.38 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-CV-7568-01 3 15531139 15531139 G A COLQ Missense_Mutation p.P38S 0.35 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-CV-7568-01 3 158546830 158546830 C T MFSD1 3'UTR 0.53 TCGA-CV-7568-01 3 159995110 159995110 G A IFT80 Missense_Mutation p.L695F 0.42 deleterious(0) possibly_damaging(0.794) TCGA-CV-7568-01 3 160395579 160395579 C A ARL14 Silent p.R149R 0.47 TCGA-CV-7568-01 3 164735571 164735571 A G SI Missense_Mutation p.V1204A 0.35 tolerated(0.31) benign(0.05) TCGA-CV-7568-01 3 164906992 164906992 G A SLITRK3 Missense_Mutation p.P543S 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-CV-7568-01 3 165548246 165548246 C T BCHE Silent p.G192G 0.35 TCGA-CV-7568-01 3 171395396 171395396 G A PLD1 Silent p.F652F 0.23 TCGA-CV-7568-01 3 172165499 172165499 G A GHSR Silent p.I235I 0.50 TCGA-CV-7568-01 3 173997364 173997364 C T NLGN1 Missense_Mutation p.P525S 0.23 tolerated(0.12) probably_damaging(0.976) TCGA-CV-7568-01 3 178916924 178916924 C T PIK3CA Missense_Mutation p.P104L 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-CV-7568-01 3 178937429 178937429 A G PIK3CA Missense_Mutation p.Y606C 0.24 deleterious(0) probably_damaging(0.926) TCGA-CV-7568-01 3 179051424 179051424 C T ZNF639 Silent p.I224I 0.33 TCGA-CV-7568-01 3 179537752 179537752 A G PEX5L Missense_Mutation p.F279L 0.36 tolerated(0.07) probably_damaging(0.995) TCGA-CV-7568-01 3 179593248 179593248 C T PEX5L Missense_Mutation p.E175K 0.35 deleterious_low_confidence(0) benign(0.297) TCGA-CV-7568-01 3 182605425 182605425 C T ATP11B Silent p.L923L 0.32 TCGA-CV-7568-01 3 182790237 182790237 C T MCCC1 Missense_Mutation p.M136I 0.42 deleterious(0.03) benign(0.063) TCGA-CV-7568-01 3 183639010 183639010 G A ABCC5 3'UTR 0.59 TCGA-CV-7568-01 3 183887862 183887862 C T DVL3 Missense_Mutation p.P523S 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-CV-7568-01 3 184043486 184043486 C T EIF4G1 Intron 0.35 TCGA-CV-7568-01 3 184910063 184910063 G A EHHADH Missense_Mutation p.P708L 0.32 deleterious(0.05) possibly_damaging(0.787) TCGA-CV-7568-01 3 184910064 184910064 G A EHHADH Missense_Mutation p.P708S 0.31 deleterious(0.01) probably_damaging(0.941) TCGA-CV-7568-01 3 186760702 186760702 C T ST6GAL1 Missense_Mutation p.P71S 0.24 benign(0.003) TCGA-CV-7568-01 3 186917660 186917660 C T RTP1 Silent p.I198I 0.44 TCGA-CV-7568-01 3 186937772 186937772 G A MASP1 3'UTR 0.50 TCGA-CV-7568-01 3 194063239 194063239 C T CPN2 Missense_Mutation p.E65K 0.44 tolerated(1) benign(0.003) TCGA-CV-7568-01 3 194117234 194117234 G A GP5 3'UTR 0.43 TCGA-CV-7568-01 3 194118337 194118337 G A GP5 Silent p.F225F 0.38 TCGA-CV-7568-01 3 195496024 195496024 C T MUC4 Splice_Site p.X4467_splice 0.41 TCGA-CV-7568-01 3 195518076 195518076 G A MUC4 Silent p.S125S 0.37 TCGA-CV-7568-01 3 195997311 195997311 G A PCYT1A Missense_Mutation p.P31L 0.33 tolerated(0.1) benign(0.001) TCGA-CV-7568-01 3 196387579 196387579 C G NRROS Silent p.S355S 0.31 TCGA-CV-7568-01 3 196674505 196674505 G A PIGZ Silent p.A421A 0.36 TCGA-CV-7568-01 3 19975465 19975465 C T EFHB Missense_Mutation p.G16R 0.41 tolerated_low_confidence(0.48) benign(0.025) TCGA-CV-7568-01 3 20225107 20225107 G A SGOL1 Missense_Mutation p.P111L 0.39 tolerated(0.16) benign(0.006) TCGA-CV-7568-01 3 27453223 27453223 G A SLC4A7 Missense_Mutation p.P550L 0.34 tolerated(0.06) possibly_damaging(0.905) TCGA-CV-7568-01 3 27453224 27453224 G A SLC4A7 Missense_Mutation p.P550S 0.34 tolerated(0.17) possibly_damaging(0.802) TCGA-CV-7568-01 3 3131914 3131914 G A IL5RA Intron 0.43 TCGA-CV-7568-01 3 31871624 31871624 G A OSBPL10 Missense_Mutation p.P213S 0.37 tolerated(0.72) benign(0.02) TCGA-CV-7568-01 3 31871625 31871625 G A OSBPL10 Silent p.A212A 0.35 TCGA-CV-7568-01 3 32932864 32932864 G A TRIM71 Missense_Mutation p.R723Q 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 3 32995561 32995561 G A CCR4 Missense_Mutation p.G216E 0.36 deleterious(0.03) possibly_damaging(0.487) TCGA-CV-7568-01 3 32995562 32995562 G A CCR4 Silent p.G216G 0.37 TCGA-CV-7568-01 3 33135676 33135676 G A TMPPE Silent p.F4F 0.36 TCGA-CV-7568-01 3 35724377 35724377 C T ARPP21 Missense_Mutation p.S56F 0.25 deleterious(0.03) possibly_damaging(0.809) TCGA-CV-7568-01 3 37514891 37514891 C G ITGA9 Silent p.R120R 0.27 TCGA-CV-7568-01 3 38136501 38136501 G A DLEC1 Missense_Mutation p.R684K 0.42 tolerated(0.4) benign(0) TCGA-CV-7568-01 3 38648264 38648264 C T SCN5A Missense_Mutation p.E346K 0.36 tolerated(0.3) benign(0.005) TCGA-CV-7568-01 3 38805034 38805034 C T SCN10A Missense_Mutation p.R218K 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 3 3887513 3887513 C T LRRN1 Silent p.S396S 0.38 TCGA-CV-7568-01 3 38938499 38938499 C A SCN11A Missense_Mutation p.R747L 0.34 tolerated(0.36) probably_damaging(0.986) TCGA-CV-7568-01 3 42750335 42750335 G A CCDC13 3'UTR 0.21 TCGA-CV-7568-01 3 42750336 42750336 G A CCDC13 3'UTR 0.20 TCGA-CV-7568-01 3 42954791 42954791 C T ZNF662 Intron 0.35 TCGA-CV-7568-01 3 44496896 44496896 G A ZNF445 Missense_Mutation p.P49L 0.36 deleterious(0) possibly_damaging(0.908) TCGA-CV-7568-01 3 44636095 44636095 A T ZNF660 Missense_Mutation p.K137I 0.34 deleterious(0.03) possibly_damaging(0.859) TCGA-CV-7568-01 3 44803150 44803150 G A KIAA1143 5'UTR 0.48 TCGA-CV-7568-01 3 44986676 44986676 G A ZDHHC3 Nonsense_Mutation p.R139* 0.40 TCGA-CV-7568-01 3 44986677 44986677 G A ZDHHC3 Silent p.D138D 0.42 TCGA-CV-7568-01 3 45052822 45052822 C T EXOSC7 Silent p.F289F 0.32 TCGA-CV-7568-01 3 45151945 45151945 G A CDCP1 Intron 0.55 TCGA-CV-7568-01 3 45530194 45530194 C T LARS2 Missense_Mutation p.P377S 0.31 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 3 45867801 45867801 C T LZTFL1 3'UTR 0.30 TCGA-CV-7568-01 3 45942754 45942754 G A CCR9 Silent p.R158R 0.43 TCGA-CV-7568-01 3 45942755 45942755 G A CCR9 Missense_Mutation p.E159K 0.44 tolerated(0.46) benign(0) TCGA-CV-7568-01 3 45989012 45989012 G A CXCR6 3'UTR 0.27 TCGA-CV-7568-01 3 45989013 45989013 G A CXCR6 3'UTR 0.28 TCGA-CV-7568-01 3 46008174 46008174 G A FYCO1 Silent p.S884S 0.32 TCGA-CV-7568-01 3 46008175 46008175 G A FYCO1 Missense_Mutation p.S884F 0.31 tolerated(0.15) possibly_damaging(0.766) TCGA-CV-7568-01 3 46062478 46062478 G A XCR1 Missense_Mutation p.S321F 0.32 deleterious(0.02) benign(0.1) TCGA-CV-7568-01 3 46486873 46486873 G A LTF Missense_Mutation p.S471F 0.33 deleterious(0) possibly_damaging(0.858) TCGA-CV-7568-01 3 46497462 46497462 C T LTF Missense_Mutation p.R108Q 0.50 tolerated(1) benign(0.002) TCGA-CV-7568-01 3 46755991 46755991 C T PRSS50 Nonsense_Mutation p.W157* 0.50 TCGA-CV-7568-01 3 46784468 46784468 G A PRSS45 Missense_Mutation p.P130S 0.32 tolerated(0.34) benign(0.003) TCGA-CV-7568-01 3 47163677 47163677 T A SETD2 Missense_Mutation p.M817L 0.42 tolerated_low_confidence(1) benign(0) TCGA-CV-7568-01 3 47462202 47462202 C T SCAP Missense_Mutation p.G469R 0.38 tolerated(0.44) benign(0.118) TCGA-CV-7568-01 3 48456348 48456348 G A PLXNB1 Missense_Mutation p.L1357F 0.31 tolerated(0.06) probably_damaging(0.995) TCGA-CV-7568-01 3 48617032 48617032 G A COL7A1 Missense_Mutation p.P1742S 0.40 unknown(0) TCGA-CV-7568-01 3 49054727 49054727 C T DALRD3 Silent p.E287E 0.35 TCGA-CV-7568-01 3 49055218 49055218 G A DALRD3 Silent p.A182A 0.32 TCGA-CV-7568-01 3 49152479 49152479 G A USP19 Silent p.F696F 0.23 TCGA-CV-7568-01 3 49463814 49463814 G A NICN1 Silent p.I60I 0.33 TCGA-CV-7568-01 3 49569013 49569013 C T DAG1 Missense_Mutation p.P357S 0.35 tolerated(0.12) benign(0.081) TCGA-CV-7568-01 3 49934739 49934739 G A MST1R Silent p.V719V 0.32 TCGA-CV-7568-01 3 50131164 50131164 A T RBM5 Missense_Mutation p.E65D 0.33 tolerated(0.24) benign(0.217) TCGA-CV-7568-01 3 50230823 50230823 G A GNAT1 Missense_Mutation p.G92E 0.44 tolerated(0.41) possibly_damaging(0.817) TCGA-CV-7568-01 3 50330826 50330826 G A HYAL3 Missense_Mutation p.R369W 0.39 tolerated(0.08) benign(0.003) TCGA-CV-7568-01 3 50334273 50334273 G A NAT6 Silent p.L230L 0.26 TCGA-CV-7568-01 3 50392780 50392780 C T TMEM115 Silent p.T350T 0.11 TCGA-CV-7568-01 3 51197996 51197996 C T DOCK3 Silent p.L300L 0.52 TCGA-CV-7568-01 3 51440675 51440675 G A VPRBP Missense_Mutation p.P1027L 0.45 tolerated_low_confidence(0.71) unknown(0) TCGA-CV-7568-01 3 51440676 51440676 G A VPRBP Missense_Mutation p.P1027S 0.48 tolerated_low_confidence(0.08) unknown(0) TCGA-CV-7568-01 3 5164241 5164241 T C ARL8B Missense_Mutation p.S31P 0.36 deleterious(0) probably_damaging(0.924) TCGA-CV-7568-01 3 51696445 51696445 C T RAD54L2 Missense_Mutation p.S1138F 0.38 deleterious(0.04) possibly_damaging(0.504) TCGA-CV-7568-01 3 51749464 51749464 G A GRM2 Missense_Mutation p.E559K 0.44 tolerated(0.86) benign(0.08) TCGA-CV-7568-01 3 52089869 52089869 G A DUSP7 Nonsense_Mutation p.Q172* 0.43 TCGA-CV-7568-01 3 52557097 52557097 G T STAB1 Missense_Mutation p.G2323W 0.32 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 3 52858009 52858009 G T ITIH4 Missense_Mutation p.P395T 0.40 tolerated(0.25) possibly_damaging(0.864) TCGA-CV-7568-01 3 52858010 52858010 G A ITIH4 Silent p.N394N 0.40 TCGA-CV-7568-01 3 53785837 53785837 C T CACNA1D Missense_Mutation p.P1213L 0.33 deleterious(0.02) possibly_damaging(0.888) TCGA-CV-7568-01 3 53785838 53785838 C T CACNA1D Silent p.P1213P 0.33 TCGA-CV-7568-01 3 53857423 53857423 C T CHDH Missense_Mutation p.A205T 0.31 deleterious(0) probably_damaging(0.919) TCGA-CV-7568-01 3 53857424 53857424 C T CHDH Silent p.E204E 0.31 TCGA-CV-7568-01 3 55504038 55504038 C T WNT5A 3'UTR 0.57 TCGA-CV-7568-01 3 58090940 58090940 C T FLNB Silent p.L582L 0.35 TCGA-CV-7568-01 3 58552814 58552814 C G FAM107A Intron 0.38 TCGA-CV-7568-01 3 58728180 58728180 G C C3orf67 3'UTR 0.45 TCGA-CV-7568-01 3 62467454 62467454 G A CADPS Silent p.I1039I 0.37 TCGA-CV-7568-01 3 62570986 62570986 G A CADPS Missense_Mutation p.P484L 0.33 deleterious(0) possibly_damaging(0.713) TCGA-CV-7568-01 3 68055747 68055747 C T FAM19A1 Intron 0.35 TCGA-CV-7568-01 3 69151019 69151019 G A ARL6IP5 Missense_Mutation p.G69E 0.36 deleterious(0) probably_damaging(0.993) TCGA-CV-7568-01 3 70008443 70008443 G A MITF Missense_Mutation p.G345R 0.25 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 3 73433280 73433280 C T PDZRN3 Missense_Mutation p.E813K 0.27 tolerated(0.53) benign(0.119) TCGA-CV-7568-01 3 74315789 74315789 C T CNTN3 Silent p.R943R 0.36 TCGA-CV-7568-01 3 78701047 78701047 G A ROBO1 Nonsense_Mutation p.Q883* 0.43 TCGA-CV-7568-01 3 85961560 85961560 G C CADM2 Missense_Mutation p.K182N 0.33 deleterious(0) probably_damaging(0.913) TCGA-CV-7568-01 3 89390208 89390208 C A EPHA3 Silent p.S319S 0.33 TCGA-CV-7568-01 3 9055173 9055173 C T SRGAP3 Missense_Mutation p.A656T 0.32 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 3 9055174 9055174 C T SRGAP3 Silent p.L655L 0.32 TCGA-CV-7568-01 3 93615439 93615439 G A PROS1 Missense_Mutation p.R316C 0.34 deleterious(0) possibly_damaging(0.841) TCGA-CV-7568-01 3 93780144 93780144 C A DHFRL1 Missense_Mutation p.R71I 0.39 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 3 93780420 93780420 G A DHFRL1 5'UTR 0.50 TCGA-CV-7568-01 4 100530113 100530113 T C MTTP Missense_Mutation p.L583P 0.25 deleterious(0) possibly_damaging(0.898) TCGA-CV-7568-01 4 101984395 101984395 C T PPP3CA Missense_Mutation p.E359K 0.36 deleterious(0) benign(0.285) TCGA-CV-7568-01 4 109740457 109740457 C T COL25A1 Missense_Mutation p.G625E 0.53 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 4 110740164 110740164 C T GAR1 Missense_Mutation p.S126L 0.48 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 4 115997399 115997399 C T NDST4 Missense_Mutation p.G265E 0.43 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 4 120481450 120481450 C T PDE5A Splice_Site p.X400_splice 0.48 TCGA-CV-7568-01 4 122791435 122791435 G A BBS7 Nonsense_Mutation p.Q12* 0.24 TCGA-CV-7568-01 4 123302227 123302227 G A ADAD1 Missense_Mutation p.E85K 0.47 tolerated(0.15) benign(0.222) TCGA-CV-7568-01 4 126240237 126240237 C T FAT4 Missense_Mutation p.P891S 0.23 probably_damaging(0.999) TCGA-CV-7568-01 4 126240238 126240238 C T FAT4 Missense_Mutation p.P891L 0.24 probably_damaging(0.999) TCGA-CV-7568-01 4 126370528 126370528 C T FAT4 Missense_Mutation p.P2786L 0.47 possibly_damaging(0.844) TCGA-CV-7568-01 4 126372376 126372376 C T FAT4 Missense_Mutation p.P3402L 0.28 probably_damaging(0.999) TCGA-CV-7568-01 4 126411592 126411592 G A FAT4 Missense_Mutation p.E4539K 0.27 benign(0.001) TCGA-CV-7568-01 4 128811293 128811293 C T PLK4 Missense_Mutation p.P578S 0.18 tolerated(0.25) benign(0.011) TCGA-CV-7568-01 4 128811294 128811294 C T PLK4 Missense_Mutation p.P578L 0.18 deleterious(0.04) benign(0.24) TCGA-CV-7568-01 4 128951758 128951758 C T C4orf29 Missense_Mutation p.P391L 0.16 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 4 129208548 129208548 C T PGRMC2 Missense_Mutation p.G157D 0.42 deleterious(0) probably_damaging(0.993) TCGA-CV-7568-01 4 134072073 134072073 C T PCDH10 Missense_Mutation p.P260S 0.16 tolerated(0.5) benign(0.038) TCGA-CV-7568-01 4 141313408 141313408 T C CLGN Missense_Mutation p.E539G 0.45 tolerated(0.15) benign(0.01) TCGA-CV-7568-01 4 154553967 154553967 G A KIAA0922 Silent p.Q1435Q 0.37 TCGA-CV-7568-01 4 154553968 154553968 G A KIAA0922 Missense_Mutation p.E1436K 0.36 tolerated(0.33) benign(0.181) TCGA-CV-7568-01 4 154896 154896 A T ZNF718 RNA 0.27 TCGA-CV-7568-01 4 156281504 156281504 G A MAP9 Missense_Mutation p.S289L 0.18 deleterious(0.02) possibly_damaging(0.625) TCGA-CV-7568-01 4 15835885 15835885 A G CD38 Missense_Mutation p.N182S 0.22 tolerated(0.49) benign(0.01) TCGA-CV-7568-01 4 1643077 1643077 C T FAM53A Silent p.E380E 0.23 TCGA-CV-7568-01 4 165962216 165962216 G A TRIM60 Missense_Mutation p.R331K 0.37 tolerated(0.69) benign(0.012) TCGA-CV-7568-01 4 165962293 165962293 G A TRIM60 Missense_Mutation p.G357R 0.46 tolerated(0.07) benign(0.272) TCGA-CV-7568-01 4 169632828 169632828 C T PALLD Missense_Mutation p.S573F 0.44 tolerated(0.09) possibly_damaging(0.781) TCGA-CV-7568-01 4 175897606 175897606 C T ADAM29 Silent p.H310H 0.28 TCGA-CV-7568-01 4 177089908 177089908 G A WDR17 Missense_Mutation p.E1065K 0.39 tolerated(0.08) probably_damaging(0.989) TCGA-CV-7568-01 4 177608422 177608422 G A VEGFC Missense_Mutation p.P355L 0.26 deleterious(0.02) possibly_damaging(0.798) TCGA-CV-7568-01 4 1803570 1803570 C T FGFR3 Missense_Mutation p.P250S 0.41 deleterious(0.04) benign(0.062) TCGA-CV-7568-01 4 185018506 185018506 G A ENPP6 Missense_Mutation p.P337S 0.43 deleterious(0.02) probably_damaging(1) TCGA-CV-7568-01 4 185552944 185552944 C T CASP3 Missense_Mutation p.G153E 0.29 tolerated(0.12) probably_damaging(0.971) TCGA-CV-7568-01 4 186253747 186253747 A C SNX25 Splice_Site p.X420_splice 0.23 TCGA-CV-7568-01 4 189060748 189060748 G A TRIML1 Silent p.E12E 0.23 TCGA-CV-7568-01 4 189060943 189060943 C T TRIML1 Silent p.I77I 0.23 TCGA-CV-7568-01 4 189068588 189068588 G A TRIML1 3'UTR 0.58 TCGA-CV-7568-01 4 20529982 20529982 C T SLIT2 Intron 0.46 TCGA-CV-7568-01 4 206531 206531 C T ZNF876P RNA 0.33 TCGA-CV-7568-01 4 2274909 2274909 A C ZFYVE28 Missense_Mutation p.L772V 0.23 tolerated(0.31) benign(0.066) TCGA-CV-7568-01 4 3117072 3117072 C T HTT Silent p.S263S 0.54 TCGA-CV-7568-01 4 3444616 3444616 C T HGFAC Missense_Mutation p.S92L 0.38 tolerated(0.19) benign(0.002) TCGA-CV-7568-01 4 39000474 39000474 A C TMEM156 Nonsense_Mutation p.Y48* 0.35 TCGA-CV-7568-01 4 40438596 40438596 G A RBM47 Missense_Mutation p.L398F 0.49 tolerated(0.11) benign(0.007) TCGA-CV-7568-01 4 42466779 42466779 G A ATP8A1 Silent p.A849A 0.23 TCGA-CV-7568-01 4 42466780 42466780 G A ATP8A1 Missense_Mutation p.A849V 0.24 deleterious(0.05) benign(0.079) TCGA-CV-7568-01 4 436842 436842 G A ZNF721 Missense_Mutation p.P472S 0.22 deleterious(0.01) possibly_damaging(0.736) TCGA-CV-7568-01 4 46264115 46264115 A T GABRA2 Missense_Mutation p.L296Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 4 47559989 47559989 C T ATP10D Silent p.S711S 0.24 TCGA-CV-7568-01 4 48496315 48496315 C T ZAR1 3'UTR 0.51 TCGA-CV-7568-01 4 48542845 48542845 G A FRYL Silent p.N1940N 0.40 TCGA-CV-7568-01 4 48542846 48542846 T A FRYL Missense_Mutation p.N1940I 0.40 tolerated(0.37) probably_damaging(0.998) TCGA-CV-7568-01 4 55524161 55524161 G A KIT 5'UTR 0.22 TCGA-CV-7568-01 4 55955873 55955873 C T KDR Missense_Mutation p.E1097K 0.23 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 4 55968595 55968595 C T KDR Missense_Mutation p.A690T 0.16 tolerated(0.08) benign(0.074) TCGA-CV-7568-01 4 5798856 5798856 C T EVC Missense_Mutation p.S665L 0.43 deleterious(0) possibly_damaging(0.631) TCGA-CV-7568-01 4 6055670 6055670 C T JAKMIP1 Intron 0.52 TCGA-CV-7568-01 4 6055743 6055743 C T JAKMIP1 Intron 0.22 TCGA-CV-7568-01 4 6374335 6374335 G A PPP2R2C Silent p.S180S 0.23 TCGA-CV-7568-01 4 657938 657938 C T PDE6B Missense_Mutation p.S686F 0.50 deleterious(0.02) probably_damaging(0.987) TCGA-CV-7568-01 4 6711458 6711458 A T MRFAP1L1 5'UTR 0.33 TCGA-CV-7568-01 4 68497581 68497581 C T UBA6 Missense_Mutation p.D730N 0.36 deleterious(0.04) benign(0.05) TCGA-CV-7568-01 4 6925544 6925544 C T TBC1D14 Missense_Mutation p.P143L 0.16 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-CV-7568-01 4 70146252 70146252 A C UGT2B28 Missense_Mutation p.I12L 0.42 tolerated(1) benign(0.001) TCGA-CV-7568-01 4 70346427 70346427 C T UGT2B4 Silent p.V504V 0.44 TCGA-CV-7568-01 4 71096926 71096926 C T FDCSP Silent p.L5L 0.21 TCGA-CV-7568-01 4 71232381 71232381 C T SMR3A Silent p.G25G 0.47 TCGA-CV-7568-01 4 71468991 71468991 C T AMBN Silent p.A221A 0.17 TCGA-CV-7568-01 4 72412180 72412180 C T SLC4A4 Silent p.I852I 0.20 TCGA-CV-7568-01 4 74277775 74277775 T A ALB Missense_Mutation p.V259E 0.44 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 4 74277801 74277801 G A ALB Missense_Mutation p.E268K 0.44 deleterious(0) probably_damaging(0.973) TCGA-CV-7568-01 4 74279294 74279294 T C ALB Missense_Mutation p.V334A 0.47 tolerated(0.12) benign(0.088) TCGA-CV-7568-01 4 76797633 76797633 G A PPEF2 Missense_Mutation p.P376L 0.39 tolerated(0.08) benign(0.269) TCGA-CV-7568-01 4 76797634 76797634 G A PPEF2 Missense_Mutation p.P376S 0.39 tolerated(0.23) probably_damaging(0.92) TCGA-CV-7568-01 4 79360167 79360167 C T FRAS1 Silent p.I1826I 0.43 TCGA-CV-7568-01 4 79522687 79522687 G A ANXA3 Missense_Mutation p.A252T 0.33 tolerated(0.07) possibly_damaging(0.765) TCGA-CV-7568-01 4 80328892 80328892 G A GK2 Missense_Mutation p.R155C 0.22 deleterious(0.01) benign(0.248) TCGA-CV-7568-01 4 80828514 80828514 C T ANTXR2 3'UTR 0.15 TCGA-CV-7568-01 4 81967227 81967227 G A BMP3 Missense_Mutation p.G218R 0.59 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7568-01 4 81967228 81967228 G A BMP3 Missense_Mutation p.G218E 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7568-01 4 8229705 8229705 C T SH3TC1 Missense_Mutation p.P762S 0.23 deleterious(0.03) probably_damaging(1) TCGA-CV-7568-01 4 83674579 83674579 G A SCD5 Intron 0.27 TCGA-CV-7568-01 4 88414792 88414792 C T SPARCL1 Missense_Mutation p.R387K 0.25 tolerated(0.57) benign(0.009) TCGA-CV-7568-01 4 88767612 88767612 C T MEPE 3'UTR 0.50 TCGA-CV-7568-01 4 88904091 88904091 G A SPP1 3'UTR 0.45 TCGA-CV-7568-01 4 90856006 90856006 G A MMRN1 Missense_Mutation p.R392K 0.41 tolerated(0.64) benign(0.001) TCGA-CV-7568-01 4 954459 954459 G A DGKQ Silent p.T926T 0.45 TCGA-CV-7568-01 4 954460 954460 G A DGKQ Missense_Mutation p.T926I 0.42 tolerated(0.19) benign(0.052) TCGA-CV-7568-01 4 981720 981720 G A IDUA Silent p.L94L 0.20 TCGA-CV-7568-01 4 981721 981721 G A IDUA Missense_Mutation p.E95K 0.20 deleterious(0.01) benign(0.186) TCGA-CV-7568-01 4 985327 985327 G A SLC26A1 Silent p.P55P 0.36 TCGA-CV-7568-01 4 996897 996897 G A IDUA Silent p.R492R 0.40 TCGA-CV-7568-01 5 101572538 101572538 A C SLCO4C1 3'UTR 0.37 TCGA-CV-7568-01 5 101748743 101748743 G T SLCO6A1 Missense_Mutation p.S526Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 5 102530646 102530646 C T PPIP5K2 Missense_Mutation p.S1159F 0.43 tolerated_low_confidence(0.06) benign(0.047) TCGA-CV-7568-01 5 111497283 111497283 C T EPB41L4A 3'Flank 0.43 TCGA-CV-7568-01 5 112175429 112175429 A C APC Missense_Mutation p.T1380P 0.28 probably_damaging(1) TCGA-CV-7568-01 5 112177570 112177570 C T APC Silent p.S2093S 0.33 TCGA-CV-7568-01 5 113822857 113822857 C T KCNN2 Silent p.F455F 0.32 TCGA-CV-7568-01 5 115350198 115350198 A G AQPEP Silent p.A808A 0.38 TCGA-CV-7568-01 5 118510990 118510990 C T DMXL1 Missense_Mutation p.S2239F 0.53 deleterious(0) possibly_damaging(0.594) TCGA-CV-7568-01 5 118809645 118809645 C T HSD17B4 Missense_Mutation p.S77F 0.26 deleterious(0.01) benign(0.062) TCGA-CV-7568-01 5 120021865 120021865 C T PRR16 Missense_Mutation p.P103S 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-7568-01 5 129521517 129521517 G A CHSY3 3'UTR 0.29 TCGA-CV-7568-01 5 130980290 130980290 G A FNIP1 3'UTR 0.31 TCGA-CV-7568-01 5 130980291 130980291 G A FNIP1 3'UTR 0.31 TCGA-CV-7568-01 5 131080314 131080314 C T FNIP1 Silent p.G54G 0.37 TCGA-CV-7568-01 5 131822063 131822063 G A IRF1 Silent p.L183L 0.26 TCGA-CV-7568-01 5 132098220 132098220 G A SEPT8 Missense_Mutation p.P218S 0.27 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 5 132200285 132200285 G A GDF9 5'UTR 0.27 TCGA-CV-7568-01 5 134015380 134015380 G A SEC24A Missense_Mutation p.R448K 0.35 tolerated(0.18) benign(0.003) TCGA-CV-7568-01 5 134153240 134153240 C T DDX46 Missense_Mutation p.P889S 0.31 tolerated(0.15) benign(0.074) TCGA-CV-7568-01 5 135276262 135276262 G A FBXL21 RNA 0.50 TCGA-CV-7568-01 5 135651434 135651434 C T TRPC7 Missense_Mutation p.D272N 0.20 deleterious(0.03) benign(0.062) TCGA-CV-7568-01 5 13735280 13735280 C T DNAH5 Silent p.R3907R 0.36 TCGA-CV-7568-01 5 137354760 137354760 G A FAM13B Missense_Mutation p.S14F 0.37 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 5 137500054 137500054 C T BRD8 Missense_Mutation p.E594K 0.31 deleterious(0.01) possibly_damaging(0.715) TCGA-CV-7568-01 5 137680634 137680634 C T FAM53C Missense_Mutation p.S86F 0.40 tolerated(0.33) benign(0.061) TCGA-CV-7568-01 5 13830774 13830774 C T DNAH5 Missense_Mutation p.G1998E 0.40 probably_damaging(0.982) TCGA-CV-7568-01 5 13865992 13865992 C T DNAH5 Silent p.R1380R 0.33 TCGA-CV-7568-01 5 13883178 13883178 C T DNAH5 Silent p.K1003K 0.38 TCGA-CV-7568-01 5 140183220 140183220 C T PCDHA3 Intron 0.34 TCGA-CV-7568-01 5 140186794 140186794 G C PCDHA4 Missense_Mutation p.G8R 0.35 deleterious_low_confidence(0.05) benign(0.037) TCGA-CV-7568-01 5 140209543 140209543 C T PCDHA6 Missense_Mutation p.R623C 0.41 deleterious_low_confidence(0) benign(0.385) TCGA-CV-7568-01 5 140215889 140215889 G A PCDHA7 Missense_Mutation p.D641N 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.503) TCGA-CV-7568-01 5 140223143 140223143 G A PCDHA8 Missense_Mutation p.G746E 0.31 tolerated_low_confidence(0.08) benign(0.43) TCGA-CV-7568-01 5 140223235 140223235 C T PCDHA8 Missense_Mutation p.P777S 0.36 tolerated_low_confidence(0.07) benign(0.068) TCGA-CV-7568-01 5 140227909 140227909 C T PCDHA9 5'UTR 0.56 TCGA-CV-7568-01 5 140229624 140229624 G A PCDHA9 Missense_Mutation p.G515D 0.36 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CV-7568-01 5 140257124 140257124 C T PCDHA12 Silent p.P689P 0.38 TCGA-CV-7568-01 5 140263101 140263101 G A PCDHA13 Silent p.E416E 0.35 TCGA-CV-7568-01 5 140263184 140263184 G A PCDHA13 Missense_Mutation p.G444E 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-CV-7568-01 5 140389663 140389663 C T PCDHAC1 3'UTR 0.39 TCGA-CV-7568-01 5 140481617 140481617 G A PCDHB3 Missense_Mutation p.E462K 0.31 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-CV-7568-01 5 140501985 140501985 G A PCDHB4 Silent p.R135R 0.36 TCGA-CV-7568-01 5 140502771 140502771 G A PCDHB4 Silent p.K397K 0.36 TCGA-CV-7568-01 5 140515221 140515221 A G PCDHB5 Missense_Mutation p.K69E 0.41 tolerated_low_confidence(0.35) benign(0.022) TCGA-CV-7568-01 5 140517377 140517377 C T PCDHB5 Silent p.A787A 0.32 TCGA-CV-7568-01 5 140564270 140564270 G A PCDHB16 Silent p.R712R 0.39 TCGA-CV-7568-01 5 140573628 140573628 C A PCDHB10 Silent p.A501A 0.38 TCGA-CV-7568-01 5 140580862 140580862 C T PCDHB11 Silent p.S505S 0.34 TCGA-CV-7568-01 5 140589607 140589607 G A PCDHB12 Silent p.G376G 0.43 TCGA-CV-7568-01 5 140590801 140590801 C T PCDHB12 Silent p.F774F 0.50 TCGA-CV-7568-01 5 140594901 140594901 C T PCDHB13 Silent p.T402T 0.37 TCGA-CV-7568-01 5 140605029 140605029 C T PCDHB14 Missense_Mutation p.P651L 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-CV-7568-01 5 140718777 140718777 G A PCDHGA2 Missense_Mutation p.R80Q 0.28 tolerated_low_confidence(0.06) benign(0.229) TCGA-CV-7568-01 5 140718947 140718947 G A PCDHGA2 Missense_Mutation p.E137K 0.36 deleterious_low_confidence(0.04) benign(0.193) TCGA-CV-7568-01 5 140740139 140740139 C T PCDHGB2 Missense_Mutation p.T146I 0.45 tolerated(0.07) benign(0.14) TCGA-CV-7568-01 5 140745111 140745111 T G PCDHGA5 Nonsense_Mutation p.L405* 0.32 TCGA-CV-7568-01 5 140773134 140773134 C T PCDHGA8 Missense_Mutation p.L252F 0.33 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-CV-7568-01 5 140783494 140783494 G A PCDHGA9 Silent p.G325G 0.24 TCGA-CV-7568-01 5 140784814 140784814 G C PCDHGA9 Missense_Mutation p.K765N 0.40 deleterious_low_confidence(0.01) benign(0.135) TCGA-CV-7568-01 5 140788355 140788355 C G PCDHGB6 Missense_Mutation p.L196V 0.33 deleterious(0.04) possibly_damaging(0.576) TCGA-CV-7568-01 5 140793084 140793084 G A PCDHGA10 Silent p.V114V 0.38 TCGA-CV-7568-01 5 140807406 140807406 G A PCDHGB6 Intron 0.52 TCGA-CV-7568-01 5 140866638 140866638 C T PCDHGC4 Missense_Mutation p.P633L 0.34 tolerated(0.22) benign(0.055) TCGA-CV-7568-01 5 141018523 141018523 C T RELL2 Silent p.A84A 0.43 TCGA-CV-7568-01 5 141033462 141033462 G A ARAP3 3'UTR 0.35 TCGA-CV-7568-01 5 141059773 141059773 G A ARAP3 Missense_Mutation p.P94L 0.40 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 5 141236840 141236840 C T PCDH1 Missense_Mutation p.G1099E 0.47 tolerated(0.07) probably_damaging(1) TCGA-CV-7568-01 5 145439428 145439428 G A SH3RF2 Splice_Site p.X519_splice 0.25 TCGA-CV-7568-01 5 145524196 145524196 C A LARS Missense_Mutation p.C527F 0.34 deleterious(0) possibly_damaging(0.824) TCGA-CV-7568-01 5 145610319 145610319 C T RBM27 Missense_Mutation p.S230F 0.43 tolerated(0.24) benign(0.138) TCGA-CV-7568-01 5 146798021 146798021 G A DPYSL3 Missense_Mutation p.T215I 0.42 deleterious(0.01) probably_damaging(1) TCGA-CV-7568-01 5 147023718 147023718 G A JAKMIP2 Missense_Mutation p.S376F 0.36 deleterious(0) probably_damaging(0.989) TCGA-CV-7568-01 5 147023758 147023758 C T JAKMIP2 Missense_Mutation p.E363K 0.45 tolerated(0.31) possibly_damaging(0.632) TCGA-CV-7568-01 5 147513428 147513428 C T SPINK5 Missense_Mutation p.T1085I 0.34 tolerated(0.34) benign(0.006) TCGA-CV-7568-01 5 148406772 148406772 G A SH3TC2 Silent p.L841L 0.42 TCGA-CV-7568-01 5 148747966 148747966 C T PCYOX1L Missense_Mutation p.R412C 0.39 tolerated(0.05) probably_damaging(0.991) TCGA-CV-7568-01 5 148810267 148810267 C T MIR145 RNA 0.50 TCGA-CV-7568-01 5 148810268 148810268 C T MIR145 RNA 0.50 TCGA-CV-7568-01 5 149782189 149782189 C T CD74 Splice_Site p.X273_splice 0.41 TCGA-CV-7568-01 5 150138584 150138584 C T DCTN4 5'UTR 0.35 TCGA-CV-7568-01 5 150722526 150722526 C T SLC36A2 Missense_Mutation p.M121I 0.38 deleterious(0.02) benign(0.013) TCGA-CV-7568-01 5 150886943 150886943 C A FAT2 Missense_Mutation p.A4097S 0.45 benign(0.013) TCGA-CV-7568-01 5 150943158 150943158 G C FAT2 Missense_Mutation p.S1101C 0.41 possibly_damaging(0.886) TCGA-CV-7568-01 5 150946583 150946583 G A FAT2 Missense_Mutation p.S637F 0.38 benign(0.021) TCGA-CV-7568-01 5 150947317 150947317 G A FAT2 Silent p.N392N 0.26 TCGA-CV-7568-01 5 151202405 151202405 G A GLRA1 Silent p.P401P 0.37 TCGA-CV-7568-01 5 151271933 151271933 G A GLRA1 Silent p.F41F 0.42 TCGA-CV-7568-01 5 156184793 156184793 G A SGCD Intron 0.27 TCGA-CV-7568-01 5 156608056 156608056 C T ITK Missense_Mutation p.P23L 0.33 deleterious(0) possibly_damaging(0.766) TCGA-CV-7568-01 5 158139297 158139297 G A EBF1 Missense_Mutation p.P472S 0.32 tolerated_low_confidence(0.46) benign(0.039) TCGA-CV-7568-01 5 158630511 158630511 G A RNF145 Nonsense_Mutation p.Q69* 0.37 TCGA-CV-7568-01 5 159992485 159992485 C T ATP10B Missense_Mutation p.R1454Q 0.35 deleterious_low_confidence(0) benign(0.238) TCGA-CV-7568-01 5 161128682 161128682 G A GABRA6 Missense_Mutation p.R422Q 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-CV-7568-01 5 161580116 161580116 C T GABRG2 Silent p.I430I 0.31 TCGA-CV-7568-01 5 16701600 16701600 G A MYO10 Silent p.S968S 0.31 TCGA-CV-7568-01 5 16701760 16701760 G A MYO10 Missense_Mutation p.S915F 0.38 deleterious(0) probably_damaging(0.991) TCGA-CV-7568-01 5 169805801 169805801 G A KCNMB1 Silent p.L161L 0.53 TCGA-CV-7568-01 5 169931580 169931580 G A KCNIP1 Missense_Mutation p.G2R 0.39 deleterious_low_confidence(0.02) benign(0.023) TCGA-CV-7568-01 5 172517687 172517687 C T CREBRF Missense_Mutation p.P169S 0.29 tolerated_low_confidence(0.2) benign(0.075) TCGA-CV-7568-01 5 176304608 176304608 C T UNC5A Silent p.T513T 0.28 TCGA-CV-7568-01 5 176520154 176520154 G A FGFR4 Nonsense_Mutation p.W358* 0.46 TCGA-CV-7568-01 5 176520155 176520155 G A FGFR4 Nonsense_Mutation p.W358* 0.47 TCGA-CV-7568-01 5 176636700 176636700 C T NSD1 Missense_Mutation p.P434S 0.41 tolerated_low_confidence(0.27) possibly_damaging(0.784) TCGA-CV-7568-01 5 176636701 176636701 C T NSD1 Missense_Mutation p.P434L 0.38 tolerated_low_confidence(0.35) benign(0.065) TCGA-CV-7568-01 5 176859793 176859793 C T GRK6 Silent p.F142F 0.26 TCGA-CV-7568-01 5 176863228 176863228 C T GRK6 Silent p.V404V 0.37 TCGA-CV-7568-01 5 177637261 177637261 G A HNRNPAB Missense_Mutation p.G306S 0.36 tolerated(0.24) unknown(0) TCGA-CV-7568-01 5 178140027 178140027 G A ZNF354A Silent p.S284S 0.36 TCGA-CV-7568-01 5 179440081 179440081 T A RNF130 Missense_Mutation p.N225Y 0.41 deleterious(0.03) possibly_damaging(0.643) TCGA-CV-7568-01 5 179731940 179731940 C T GFPT2 Splice_Site p.X559_splice 0.36 TCGA-CV-7568-01 5 180424258 180424258 G A BTNL3 Missense_Mutation p.G148E 0.31 tolerated(0.09) benign(0.099) TCGA-CV-7568-01 5 180622618 180622618 T G TRIM7 Missense_Mutation p.K362Q 0.43 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 5 1880923 1880923 G A IRX4 Missense_Mutation p.S108L 0.27 deleterious(0.01) benign(0.003) TCGA-CV-7568-01 5 1880924 1880924 A C IRX4 Missense_Mutation p.S108A 0.27 tolerated(0.63) benign(0.001) TCGA-CV-7568-01 5 19473415 19473415 G A CDH18 Missense_Mutation p.H765Y 0.42 deleterious(0) benign(0.086) TCGA-CV-7568-01 5 22143082 22143082 G A CDH12 Intron 0.32 TCGA-CV-7568-01 5 23526363 23526363 C T PRDM9 Missense_Mutation p.P389L 0.36 tolerated(0.17) possibly_damaging(0.584) TCGA-CV-7568-01 5 24488014 24488014 C T CDH10 Missense_Mutation p.D709N 0.38 tolerated(0.24) probably_damaging(0.989) TCGA-CV-7568-01 5 24488015 24488015 C T CDH10 Silent p.T708T 0.38 TCGA-CV-7568-01 5 24488039 24488039 C T CDH10 Silent p.R700R 0.43 TCGA-CV-7568-01 5 24488040 24488040 C T CDH10 Missense_Mutation p.R700K 0.44 tolerated(0.24) probably_damaging(0.92) TCGA-CV-7568-01 5 24535388 24535388 C T CDH10 Missense_Mutation p.G216D 0.33 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 5 24535389 24535389 C T CDH10 Splice_Site p.X216_splice 0.31 TCGA-CV-7568-01 5 26915831 26915831 C T CDH9 Missense_Mutation p.E144K 0.32 deleterious(0) benign(0.074) TCGA-CV-7568-01 5 31302366 31302366 C T CDH6 Silent p.T320T 0.30 TCGA-CV-7568-01 5 33561153 33561153 C G ADAMTS12 Missense_Mutation p.W1368C 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 5 35806928 35806928 C T SPEF2 Silent p.I1710I 0.33 TCGA-CV-7568-01 5 35876315 35876315 C T IL7R Silent p.C369C 0.34 TCGA-CV-7568-01 5 35876316 35876316 C T IL7R Silent p.L370L 0.34 TCGA-CV-7568-01 5 37107724 37107724 G A C5orf42 Missense_Mutation p.H3192Y 0.16 deleterious_low_confidence(0.03) benign(0.398) TCGA-CV-7568-01 5 38370429 38370429 C T EGFLAM Missense_Mutation p.H193Y 0.38 deleterious_low_confidence(0) benign(0.233) TCGA-CV-7568-01 5 38407185 38407185 T A EGFLAM Missense_Mutation p.Y362N 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-CV-7568-01 5 39127891 39127891 G A FYB Missense_Mutation p.P630L 0.35 deleterious(0.04) benign(0.007) TCGA-CV-7568-01 5 39376875 39376875 C T DAB2 Missense_Mutation p.E672K 0.43 deleterious(0) benign(0.362) TCGA-CV-7568-01 5 40976893 40976893 G A C7 Missense_Mutation p.E706K 0.46 deleterious(0) possibly_damaging(0.898) TCGA-CV-7568-01 5 41058287 41058287 C T MROH2B Missense_Mutation p.A212T 0.33 deleterious(0.02) possibly_damaging(0.729) TCGA-CV-7568-01 5 43651923 43651923 C T NNT Silent p.L600L 0.33 TCGA-CV-7568-01 5 55253116 55253116 G A IL6ST Missense_Mutation p.P326L 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 5 56778022 56778022 G A ACTBL2 Silent p.A171A 0.29 TCGA-CV-7568-01 5 63256536 63256536 C A HTR1A Silent p.L337L 0.27 TCGA-CV-7568-01 5 6606978 6606978 G A NSUN2 Missense_Mutation p.P519L 0.40 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 5 66461410 66461410 C T MAST4 Missense_Mutation p.P2135S 0.26 benign(0.149) TCGA-CV-7568-01 5 66461411 66461411 C T MAST4 Missense_Mutation p.P2135L 0.26 benign(0.157) TCGA-CV-7568-01 5 66461818 66461818 C T MAST4 Missense_Mutation p.P2271S 0.23 benign(0.013) TCGA-CV-7568-01 5 66461819 66461819 C T MAST4 Missense_Mutation p.P2271L 0.25 benign(0.008) TCGA-CV-7568-01 5 68412345 68412345 C T SLC30A5 Silent p.I399I 0.32 TCGA-CV-7568-01 5 71491536 71491536 T A MAP1B Missense_Mutation p.I785N 0.33 unknown(0) TCGA-CV-7568-01 5 71648571 71648571 C T PTCD2 Missense_Mutation p.S311L 0.45 deleterious(0) probably_damaging(0.934) TCGA-CV-7568-01 5 71739682 71739682 G A ZNF366 Silent p.P712P 0.31 TCGA-CV-7568-01 5 71739683 71739683 G A ZNF366 Missense_Mutation p.P712L 0.31 tolerated_low_confidence(0.14) benign(0.1) TCGA-CV-7568-01 5 71757217 71757217 C T ZNF366 Missense_Mutation p.G36E 0.38 tolerated_low_confidence(0.69) benign(0.009) TCGA-CV-7568-01 5 76029356 76029356 G A F2R 3'UTR 0.29 TCGA-CV-7568-01 5 7626395 7626395 C T ADCY2 Missense_Mutation p.S229L 0.31 tolerated(0.33) benign(0.159) TCGA-CV-7568-01 5 77805826 77805826 G A LHFPL2 Missense_Mutation p.P71S 0.48 tolerated(0.82) benign(0.003) TCGA-CV-7568-01 5 77805827 77805827 G A LHFPL2 Silent p.N70N 0.52 TCGA-CV-7568-01 5 7789866 7789866 C T ADCY2 Missense_Mutation p.P861S 0.46 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 5 78977832 78977832 G A PAPD4 Missense_Mutation p.R443K 0.35 deleterious(0) probably_damaging(0.985) TCGA-CV-7568-01 5 80376019 80376019 G A RASGRF2 Missense_Mutation p.A323T 0.42 deleterious(0.02) benign(0.248) TCGA-CV-7568-01 5 80626109 80626109 T C ACOT12 3'UTR 0.50 TCGA-CV-7568-01 5 82817211 82817211 G A VCAN Missense_Mutation p.G1029E 0.38 tolerated(0.86) benign(0.001) TCGA-CV-7568-01 5 82834652 82834652 G A VCAN Missense_Mutation p.V1944M 0.41 deleterious(0.01) probably_damaging(0.945) TCGA-CV-7568-01 5 82836302 82836302 G A VCAN Missense_Mutation p.E2494K 0.41 deleterious(0.03) possibly_damaging(0.781) TCGA-CV-7568-01 5 82836515 82836515 G A VCAN Missense_Mutation p.E2565K 0.42 deleterious(0.02) benign(0.317) TCGA-CV-7568-01 5 89949315 89949315 C T GPR98 Silent p.F1308F 0.40 TCGA-CV-7568-01 5 90024571 90024571 G A GPR98 Missense_Mutation p.G3416E 0.37 benign(0.002) TCGA-CV-7568-01 5 90106721 90106721 C T GPR98 Missense_Mutation p.S5215F 0.43 benign(0.029) TCGA-CV-7568-01 5 90106722 90106722 C T GPR98 Silent p.S5215S 0.42 TCGA-CV-7568-01 5 90445960 90445960 C T GPR98 Silent p.F6182F 0.23 TCGA-CV-7568-01 5 93076215 93076215 G A POU5F2 3'UTR 0.43 TCGA-CV-7568-01 5 94204083 94204083 A G MCTP1 Silent p.S797S 0.55 TCGA-CV-7568-01 6 100061805 100061805 G A PRDM13 Missense_Mutation p.E432K 0.87 deleterious_low_confidence(0.03) possibly_damaging(0.512) TCGA-CV-7568-01 6 105233028 105233028 C T HACE1 Missense_Mutation p.G414E 0.44 tolerated(0.83) benign(0) TCGA-CV-7568-01 6 110567269 110567269 C T METTL24 Silent p.K327K 0.53 TCGA-CV-7568-01 6 111543266 111543266 C T SLC16A10 Missense_Mutation p.P459L 0.67 deleterious(0.03) probably_damaging(1) TCGA-CV-7568-01 6 112421922 112421922 C T FAM229B Missense_Mutation p.P59S 0.43 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-CV-7568-01 6 112440463 112440463 G A LAMA4 Nonsense_Mutation p.R1573* 0.57 TCGA-CV-7568-01 6 114267235 114267235 G A HDAC2 Missense_Mutation p.R307C 0.55 deleterious(0.02) possibly_damaging(0.594) TCGA-CV-7568-01 6 114267236 114267236 G A HDAC2 Silent p.I306I 0.56 TCGA-CV-7568-01 6 117718196 117718196 G A ROS1 Missense_Mutation p.P221S 0.61 deleterious(0.02) probably_damaging(0.997) TCGA-CV-7568-01 6 118786470 118786470 C T CEP85L 3'UTR 0.60 TCGA-CV-7568-01 6 126080935 126080935 T C HEY2 Missense_Mutation p.V334A 0.09 deleterious(0) possibly_damaging(0.798) TCGA-CV-7568-01 6 129371227 129371227 C T LAMA2 Missense_Mutation p.P93S 0.55 tolerated(0.12) benign(0.259) TCGA-CV-7568-01 6 131900308 131900308 C T ARG1 Missense_Mutation p.P71L 0.57 tolerated(0.34) possibly_damaging(0.81) TCGA-CV-7568-01 6 136582518 136582518 G A BCLAF1 Missense_Mutation p.S881L 0.22 deleterious(0) possibly_damaging(0.504) TCGA-CV-7568-01 6 136597308 136597308 C T BCLAF1 Missense_Mutation p.G452E 0.20 tolerated(0.3) benign(0.427) TCGA-CV-7568-01 6 143092277 143092277 G A HIVEP2 Missense_Mutation p.P1200L 0.61 tolerated(0.08) possibly_damaging(0.848) TCGA-CV-7568-01 6 145093100 145093100 C T UTRN Silent p.S2851S 0.08 TCGA-CV-7568-01 6 148840782 148840782 C T SASH1 Missense_Mutation p.P321L 0.65 tolerated_low_confidence(0.43) benign(0.075) TCGA-CV-7568-01 6 148867169 148867169 C T SASH1 Missense_Mutation p.P1123S 0.57 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7568-01 6 150005651 150005651 G A LATS1 Missense_Mutation p.P192S 0.64 tolerated_low_confidence(0.28) benign(0.014) TCGA-CV-7568-01 6 150209624 150209624 C T RAET1E 3'UTR 0.58 TCGA-CV-7568-01 6 150209625 150209625 C T RAET1E 3'UTR 0.56 TCGA-CV-7568-01 6 153019152 153019152 C T MYCT1 Missense_Mutation p.L39F 0.67 tolerated_low_confidence(0.46) benign(0.007) TCGA-CV-7568-01 6 154412608 154412608 G A OPRM1 Splice_Site p.X481_splice 0.52 TCGA-CV-7568-01 6 155750157 155750157 G A NOX3 Silent p.L306L 0.59 TCGA-CV-7568-01 6 160496887 160496887 C T IGF2R Silent p.G1725G 0.81 TCGA-CV-7568-01 6 160828085 160828085 C T SLC22A3 Silent p.I182I 0.58 TCGA-CV-7568-01 6 165715438 165715438 C T C6orf118 Missense_Mutation p.D125N 0.60 tolerated(1) benign(0.004) TCGA-CV-7568-01 6 165715439 165715439 C T C6orf118 Silent p.Q124Q 0.63 TCGA-CV-7568-01 6 165746390 165746390 G A PDE10A 3'UTR 0.44 TCGA-CV-7568-01 6 165809838 165809838 G A PDE10A Silent p.T463T 0.65 TCGA-CV-7568-01 6 166833431 166833431 C T RPS6KA2 Missense_Mutation p.G595S 0.61 deleterious(0.01) benign(0.165) TCGA-CV-7568-01 6 17781111 17781111 G A KIF13A Silent p.S1232S 0.60 TCGA-CV-7568-01 6 24596621 24596621 C T KIAA0319 Missense_Mutation p.G94D 0.57 tolerated(0.59) benign(0.005) TCGA-CV-7568-01 6 24596622 24596622 C T KIAA0319 Missense_Mutation p.G94S 0.56 tolerated(0.21) benign(0.015) TCGA-CV-7568-01 6 26205038 26205038 C T HIST1H4E Missense_Mutation p.R56C 0.46 deleterious(0.04) probably_damaging(0.931) TCGA-CV-7568-01 6 26384039 26384039 C A BTN2A2 5'UTR 0.55 TCGA-CV-7568-01 6 27369165 27369165 G A ZNF391 Missense_Mutation p.G339E 0.62 deleterious(0.03) benign(0.114) TCGA-CV-7568-01 6 27799086 27799086 T C HIST1H4K Missense_Mutation p.T74A 0.08 deleterious(0.04) benign(0.234) TCGA-CV-7568-01 6 28254883 28254883 C T PGBD1 Missense_Mutation p.L194F 0.60 tolerated_low_confidence(0.36) benign(0.003) TCGA-CV-7568-01 6 28541289 28541289 C T SCAND3 Missense_Mutation p.E793K 0.61 deleterious_low_confidence(0.03) probably_damaging(0.971) TCGA-CV-7568-01 6 28543894 28543894 G A SCAND3 Silent p.S196S 0.52 TCGA-CV-7568-01 6 28964205 28964205 C T ZNF311 Missense_Mutation p.E192K 0.62 tolerated(0.24) benign(0.007) TCGA-CV-7568-01 6 30309967 30309967 C T TRIM39 Silent p.Y496Y 0.70 TCGA-CV-7568-01 6 30309968 30309968 C T TRIM39 Missense_Mutation p.P497S 0.68 tolerated(0.11) probably_damaging(1) TCGA-CV-7568-01 6 30671662 30671662 G A MDC1 Silent p.S1766S 0.58 TCGA-CV-7568-01 6 30893996 30893996 C T VARS2 3'UTR 0.65 TCGA-CV-7568-01 6 31544999 31544999 G A TNF Silent p.E129E 0.06 TCGA-CV-7568-01 6 31657449 31657449 G A ABHD16A Silent p.A330A 0.46 TCGA-CV-7568-01 6 31657450 31657450 G A ABHD16A Missense_Mutation p.A330V 0.46 deleterious(0.01) possibly_damaging(0.815) TCGA-CV-7568-01 6 31692569 31692569 G A C6orf25 Missense_Mutation p.R190K 0.11 tolerated_low_confidence(0.05) benign(0.033) TCGA-CV-7568-01 6 31778766 31778766 C T HSPA1L Missense_Mutation p.M328I 0.64 tolerated_low_confidence(0.4) benign(0.001) TCGA-CV-7568-01 6 31910823 31910823 C T CFB Missense_Mutation p.A283V 0.53 tolerated(0.17) benign(0.217) TCGA-CV-7568-01 6 31910824 31910824 C T CFB Silent p.A283A 0.54 TCGA-CV-7568-01 6 31917212 31917212 G A CFB Missense_Mutation p.G931E 0.56 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 6 31917213 31917213 G A CFB Silent p.G931G 0.56 TCGA-CV-7568-01 6 31940120 31940120 G A STK19 Missense_Mutation p.E88K 0.60 tolerated_low_confidence(0.14) benign(0.091) TCGA-CV-7568-01 6 32017095 32017095 G A TNXB 5'Flank 0.63 TCGA-CV-7568-01 6 32036476 32036476 C T TNXB Missense_Mutation p.E1971K 0.57 benign(0.167) TCGA-CV-7568-01 6 32036477 32036477 C T TNXB Silent p.E1970E 0.55 TCGA-CV-7568-01 6 32159644 32159644 C T GPSM3 Missense_Mutation p.E63K 0.65 deleterious(0) probably_damaging(0.973) TCGA-CV-7568-01 6 32163139 32163139 T A NOTCH4 3'UTR 0.64 TCGA-CV-7568-01 6 33245462 33245462 C T B3GALT4 Missense_Mutation p.A89V 0.06 tolerated(0.06) probably_damaging(0.964) TCGA-CV-7568-01 6 33371888 33371888 C T KIFC1 Silent p.S246S 0.14 TCGA-CV-7568-01 6 33658768 33658768 C T ITPR3 Silent p.I2369I 0.06 TCGA-CV-7568-01 6 34512014 34512014 C T SPDEF Nonsense_Mutation p.W73* 0.76 TCGA-CV-7568-01 6 34838701 34838701 G A UHRF1BP1 Silent p.E1263E 0.53 TCGA-CV-7568-01 6 350905 350905 A C DUSP22 3'UTR 0.37 TCGA-CV-7568-01 6 36275465 36275465 C T PNPLA1 Missense_Mutation p.S524F 0.17 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-CV-7568-01 6 38897329 38897329 G A DNAH8 Missense_Mutation p.D3504N 0.58 probably_damaging(0.998) TCGA-CV-7568-01 6 39507891 39507891 G A KIF6 Silent p.F511F 0.07 TCGA-CV-7568-01 6 41011350 41011350 G A TSPO2 Silent p.L76L 0.07 TCGA-CV-7568-01 6 42236688 42236688 C T TRERF1 Missense_Mutation p.G214D 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-CV-7568-01 6 42615901 42615901 C T UBR2 Missense_Mutation p.H819Y 0.42 tolerated(0.68) benign(0.002) TCGA-CV-7568-01 6 43227345 43227345 C T TTBK1 Missense_Mutation p.P442L 0.50 possibly_damaging(0.721) TCGA-CV-7568-01 6 43316087 43316087 G A ZNF318 Missense_Mutation p.S1016L 0.44 benign(0.013) TCGA-CV-7568-01 6 43316160 43316160 A T ZNF318 Missense_Mutation p.L992I 0.26 benign(0.133) TCGA-CV-7568-01 6 44141076 44141076 C T CAPN11 Missense_Mutation p.L262F 0.15 deleterious(0.01) benign(0.17) TCGA-CV-7568-01 6 44224578 44224578 G A SLC35B2 Silent p.L17L 0.17 TCGA-CV-7568-01 6 44224579 44224579 G A SLC35B2 Silent p.S16S 0.15 TCGA-CV-7568-01 6 44254208 44254208 G A TCTE1 Silent p.S113S 0.43 TCGA-CV-7568-01 6 44268275 44268275 G A AARS2 3'UTR 0.59 TCGA-CV-7568-01 6 46216488 46216488 C T RCAN2 Missense_Mutation p.G124E 0.11 tolerated(0.13) probably_damaging(1) TCGA-CV-7568-01 6 46658596 46658596 G A TDRD6 Missense_Mutation p.D911N 0.54 tolerated(0.15) benign(0.053) TCGA-CV-7568-01 6 47846284 47846284 A G PTCHD4 Missense_Mutation p.F766L 0.52 tolerated(0.12) probably_damaging(0.966) TCGA-CV-7568-01 6 50718994 50718994 C T TFAP2D Missense_Mutation p.P366S 0.09 deleterious(0.02) possibly_damaging(0.475) TCGA-CV-7568-01 6 51524307 51524307 C T PKHD1 Missense_Mutation p.M3539I 0.24 tolerated(0.23) benign(0.073) TCGA-CV-7568-01 6 51524373 51524373 G A PKHD1 Silent p.P3517P 0.35 TCGA-CV-7568-01 6 51720722 51720722 G A PKHD1 Missense_Mutation p.S2627F 0.17 tolerated(1) benign(0) TCGA-CV-7568-01 6 51751940 51751940 G A PKHD1 Missense_Mutation p.S2367F 0.22 tolerated(0.05) benign(0.35) TCGA-CV-7568-01 6 51924787 51924787 C T PKHD1 Nonsense_Mutation p.W391* 0.48 TCGA-CV-7568-01 6 55147226 55147226 G A HCRTR2 Missense_Mutation p.G437R 0.31 tolerated_low_confidence(0.31) possibly_damaging(0.829) TCGA-CV-7568-01 6 56035551 56035551 G C COL21A1 Missense_Mutation p.Q308E 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 6 56351926 56351926 G A DST Missense_Mutation p.T4385I 0.53 probably_damaging(0.994) TCGA-CV-7568-01 6 56494202 56494202 G A DST Missense_Mutation p.H904Y 0.20 probably_damaging(0.998) TCGA-CV-7568-01 6 57012688 57012688 C T ZNF451 Missense_Mutation p.P602L 0.46 tolerated(0.42) benign(0.012) TCGA-CV-7568-01 6 6266848 6266848 G A F13A1 Nonsense_Mutation p.R172* 0.05 TCGA-CV-7568-01 6 70500415 70500415 G A LMBRD1 Intron 0.47 TCGA-CV-7568-01 6 70589476 70589476 C T COL19A1 Missense_Mutation p.P6L 0.09 tolerated_low_confidence(0.7) unknown(0) TCGA-CV-7568-01 6 70866593 70866593 T G COL19A1 Missense_Mutation p.I757R 0.21 tolerated(0.22) possibly_damaging(0.817) TCGA-CV-7568-01 6 70993476 70993476 C T COL9A1 Silent p.R248R 0.79 TCGA-CV-7568-01 6 71009790 71009790 C T COL9A1 Silent p.V85V 0.17 TCGA-CV-7568-01 6 72113281 72113281 C T MIR30A RNA 0.38 TCGA-CV-7568-01 6 7230907 7230907 C T RREB1 Missense_Mutation p.L859F 0.38 tolerated(0.08) possibly_damaging(0.667) TCGA-CV-7568-01 6 7232112 7232112 C T RREB1 Silent p.S1260S 0.56 TCGA-CV-7568-01 6 7232113 7232113 C T RREB1 Silent p.L1261L 0.57 TCGA-CV-7568-01 6 72947532 72947532 G A RIMS1 Missense_Mutation p.G622R 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 6 72984052 72984052 G A RIMS1 Silent p.R1133R 0.17 TCGA-CV-7568-01 6 74304771 74304772 AA - SLC17A5 3'UTR 0.12 TCGA-CV-7568-01 6 7571787 7571787 C T DSP Nonsense_Mutation p.Q625* 0.65 TCGA-CV-7568-01 6 76022359 76022359 C T FILIP1 Silent p.E1063E 0.47 TCGA-CV-7568-01 6 83075788 83075788 C T TPBG Silent p.F370F 0.52 TCGA-CV-7568-01 6 83829546 83829546 C T DOPEY1 Silent p.F320F 0.53 TCGA-CV-7568-01 6 90604513 90604513 G A GJA10 Missense_Mutation p.R109K 0.46 tolerated(0.46) benign(0.044) TCGA-CV-7568-01 6 90642434 90642434 G A BACH2 Missense_Mutation p.T740M 0.67 tolerated(0.1) benign(0.255) TCGA-CV-7568-01 7 100212898 100212898 C T MOSPD3 3'UTR 0.46 TCGA-CV-7568-01 7 100452246 100452246 C T SLC12A9 Silent p.F62F 0.39 TCGA-CV-7568-01 7 100459377 100459377 C T SLC12A9 Missense_Mutation p.R519W 0.40 deleterious(0) probably_damaging(0.97) TCGA-CV-7568-01 7 100683237 100683237 C T MUC17 Missense_Mutation p.A2847V 0.31 unknown(0) TCGA-CV-7568-01 7 100686756 100686756 G A MUC17 Missense_Mutation p.G4020D 0.38 benign(0) TCGA-CV-7568-01 7 100686757 100686757 C A MUC17 Silent p.G4020G 0.38 TCGA-CV-7568-01 7 100732060 100732060 C T TRIM56 Silent p.P489P 0.45 TCGA-CV-7568-01 7 100775222 100775222 C T SERPINE1 Missense_Mutation p.A191V 0.31 deleterious(0) probably_damaging(0.995) TCGA-CV-7568-01 7 100775223 100775223 C T SERPINE1 Silent p.A191A 0.31 TCGA-CV-7568-01 7 101845342 101845342 C T CUX1 Missense_Mutation p.P933L 0.31 deleterious(0.01) unknown(0) TCGA-CV-7568-01 7 101845343 101845343 C T CUX1 Silent p.P933P 0.30 TCGA-CV-7568-01 7 102898138 102898138 C T DPY19L2P2 RNA 0.44 TCGA-CV-7568-01 7 102898139 102898139 C T DPY19L2P2 RNA 0.43 TCGA-CV-7568-01 7 102963025 102963025 G A DNAJC2 Missense_Mutation p.A289V 0.36 tolerated(0.26) benign(0.115) TCGA-CV-7568-01 7 103243847 103243847 C T RELN Nonsense_Mutation p.W1079* 0.34 TCGA-CV-7568-01 7 103301848 103301848 C T RELN Silent p.G472G 0.28 TCGA-CV-7568-01 7 104377191 104377191 G A LHFPL3 Missense_Mutation p.C172Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 7 104377192 104377192 T A LHFPL3 Nonsense_Mutation p.C172* 0.37 TCGA-CV-7568-01 7 106509197 106509197 G T PIK3CG Missense_Mutation p.R397S 0.43 tolerated(0.71) benign(0.005) TCGA-CV-7568-01 7 106526692 106526692 G A PIK3CG Missense_Mutation p.M995I 0.23 deleterious(0.01) benign(0.286) TCGA-CV-7568-01 7 106826888 106826888 C G HBP1 Missense_Mutation p.P208R 0.44 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 7 110764643 110764643 A T LRRN3 Missense_Mutation p.K605N 0.28 tolerated(0.13) benign(0.001) TCGA-CV-7568-01 7 112424024 112424024 C T TMEM168 Missense_Mutation p.R286K 0.33 tolerated(0.95) benign(0.028) TCGA-CV-7568-01 7 113519998 113519998 G A PPP1R3A Silent p.S383S 0.35 TCGA-CV-7568-01 7 113558353 113558353 C T PPP1R3A Silent p.K233K 0.33 TCGA-CV-7568-01 7 11501730 11501730 G A THSD7A Silent p.I803I 0.52 TCGA-CV-7568-01 7 11521554 11521554 G A THSD7A Silent p.A626A 0.39 TCGA-CV-7568-01 7 11633120 11633120 C T THSD7A Silent p.Q344Q 0.27 TCGA-CV-7568-01 7 116863044 116863044 C T ST7 3'UTR 0.33 TCGA-CV-7568-01 7 117420625 117420625 G A CTTNBP2 Missense_Mutation p.S798L 0.33 tolerated(0.07) benign(0.024) TCGA-CV-7568-01 7 120428813 120428813 C T TSPAN12 Missense_Mutation p.D251N 0.35 tolerated(0.08) benign(0.101) TCGA-CV-7568-01 7 120740127 120740127 G A CPED1 Silent p.K299K 0.39 TCGA-CV-7568-01 7 121756701 121756701 G A AASS Missense_Mutation p.R294C 0.39 tolerated(0.06) possibly_damaging(0.893) TCGA-CV-7568-01 7 122047602 122047602 C T CADPS2 Missense_Mutation p.R913Q 0.44 tolerated(0.15) benign(0.187) TCGA-CV-7568-01 7 123092827 123092827 C T IQUB Silent p.K782K 0.44 TCGA-CV-7568-01 7 123092828 123092828 T A IQUB Missense_Mutation p.K782M 0.45 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-CV-7568-01 7 123152129 123152129 G A IQUB Missense_Mutation p.S89L 0.28 tolerated_low_confidence(0.21) benign(0.006) TCGA-CV-7568-01 7 126883050 126883050 T A GRM8 Missense_Mutation p.E70V 0.27 deleterious(0) probably_damaging(0.987) TCGA-CV-7568-01 7 127569372 127569372 C T SND1 Silent p.F553F 0.32 TCGA-CV-7568-01 7 129125494 129125494 C T STRIP2 Missense_Mutation p.R777C 0.45 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 7 129691187 129691187 C T ZC3HC1 Missense_Mutation p.G7E 0.27 tolerated_low_confidence(0.18) benign(0.014) TCGA-CV-7568-01 7 129691188 129691188 C T ZC3HC1 Missense_Mutation p.G7R 0.27 deleterious_low_confidence(0.01) benign(0.398) TCGA-CV-7568-01 7 129691231 129691231 C T ZC3HC1 5'UTR 0.25 TCGA-CV-7568-01 7 131128280 131128280 G A MKLN1 Missense_Mutation p.G405D 0.30 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 7 131815207 131815207 C T PLXNA4 3'UTR 0.45 TCGA-CV-7568-01 7 131887427 131887427 C T PLXNA4 Missense_Mutation p.C855Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 7 133041229 133041229 G C EXOC4 Missense_Mutation p.L303F 0.38 tolerated(0.07) benign(0.135) TCGA-CV-7568-01 7 133886309 133886309 G C LRGUK Missense_Mutation p.K608N 0.36 tolerated(0.22) benign(0.009) TCGA-CV-7568-01 7 135069477 135069477 G A CNOT4 Intron 0.38 TCGA-CV-7568-01 7 136699661 136699661 C T CHRM2 Missense_Mutation p.P17S 0.41 tolerated(0.1) probably_damaging(1) TCGA-CV-7568-01 7 138417793 138417793 C T ATP6V0A4 Silent p.E579E 0.29 TCGA-CV-7568-01 7 138732569 138732569 G A ZC3HAV1 Missense_Mutation p.S827F 0.48 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 7 138968645 138968645 C T UBN2 Silent p.P998P 0.28 TCGA-CV-7568-01 7 13971342 13971342 G A ETV1 Missense_Mutation p.S196F 0.53 deleterious(0.03) probably_damaging(0.99) TCGA-CV-7568-01 7 140218518 140218518 G A DENND2A Missense_Mutation p.H1007Y 0.22 deleterious(0.01) possibly_damaging(0.598) TCGA-CV-7568-01 7 140394569 140394569 C T ADCK2 Missense_Mutation p.P616L 0.49 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 7 140394570 140394570 C T ADCK2 Silent p.P616P 0.48 TCGA-CV-7568-01 7 140402710 140402710 C T NDUFB2 Missense_Mutation p.P48L 0.47 deleterious(0) probably_damaging(0.964) TCGA-CV-7568-01 7 141618868 141618868 C T OR9A4 Missense_Mutation p.L65F 0.27 tolerated(0.25) probably_damaging(0.938) TCGA-CV-7568-01 7 141635614 141635614 C T CLEC5A Silent p.L115L 0.47 TCGA-CV-7568-01 7 141727464 141727464 C T MGAM Missense_Mutation p.R384C 0.32 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 7 141803120 141803120 C T MGAM Missense_Mutation p.P1793S 0.27 tolerated(0.33) benign(0.001) TCGA-CV-7568-01 7 142119873 142119873 A G TRBV7-7 Silent p.I98I 0.42 TCGA-CV-7568-01 7 142625949 142625949 A G TRPV5 Missense_Mutation p.L200S 0.52 deleterious(0) probably_damaging(0.988) TCGA-CV-7568-01 7 142651377 142651377 G A KEL Missense_Mutation p.S273F 0.53 tolerated(0.44) benign(0.007) TCGA-CV-7568-01 7 143054043 143054043 G A FAM131B Missense_Mutation p.S228L 0.35 tolerated(0.37) probably_damaging(0.998) TCGA-CV-7568-01 7 147815307 147815307 C T CNTNAP2 Silent p.F827F 0.35 TCGA-CV-7568-01 7 148975489 148975489 G C ZNF783 Splice_Site p.X225_splice 0.32 TCGA-CV-7568-01 7 150704269 150704269 G A NOS3 Missense_Mutation p.E673K 0.29 deleterious(0.03) benign(0.066) TCGA-CV-7568-01 7 150751520 150751520 G A CDK5 Missense_Mutation p.P228L 0.36 deleterious(0) probably_damaging(0.925) TCGA-CV-7568-01 7 150905022 150905022 C T ABCF2 3'UTR 0.38 TCGA-CV-7568-01 7 155251019 155251019 G A EN2 5'UTR 0.38 TCGA-CV-7568-01 7 15666370 15666370 C T MEOX2 Splice_Site p.X230_splice 0.46 TCGA-CV-7568-01 7 158718982 158718982 A T WDR60 Missense_Mutation p.T788S 0.29 tolerated(0.57) benign(0.035) TCGA-CV-7568-01 7 158896490 158896490 G A VIPR2 Silent p.F105F 0.43 TCGA-CV-7568-01 7 18066490 18066490 C T PRPS1L1 Missense_Mutation p.G306R 0.29 deleterious(0) possibly_damaging(0.868) TCGA-CV-7568-01 7 19184769 19184769 C T FERD3L Missense_Mutation p.D73N 0.30 tolerated(0.12) benign(0.038) TCGA-CV-7568-01 7 20198464 20198464 G T MACC1 Missense_Mutation p.P507Q 0.34 deleterious(0) probably_damaging(0.94) TCGA-CV-7568-01 7 21640715 21640715 C A DNAH11 Missense_Mutation p.P1115T 0.62 possibly_damaging(0.543) TCGA-CV-7568-01 7 21640716 21640716 C T DNAH11 Missense_Mutation p.P1115L 0.62 benign(0.037) TCGA-CV-7568-01 7 21698455 21698455 G A DNAH11 Missense_Mutation p.E1717K 0.56 benign(0.003) TCGA-CV-7568-01 7 21784504 21784504 T G DNAH11 Missense_Mutation p.M2785R 0.33 benign(0.062) TCGA-CV-7568-01 7 22532215 22532215 G A STEAP1B Missense_Mutation p.S244F 0.44 deleterious(0) probably_damaging(0.987) TCGA-CV-7568-01 7 24902874 24902874 G A OSBPL3 Missense_Mutation p.S272L 0.44 tolerated(0.82) benign(0.001) TCGA-CV-7568-01 7 2613060 2613060 C T IQCE Missense_Mutation p.P135S 0.29 tolerated(0.08) possibly_damaging(0.486) TCGA-CV-7568-01 7 2686531 2686531 G A TTYH3 Silent p.L56L 0.46 TCGA-CV-7568-01 7 2686532 2686532 G A TTYH3 Missense_Mutation p.D57N 0.46 tolerated(1) benign(0.012) TCGA-CV-7568-01 7 27142178 27142178 G A HOXA2 5'UTR 0.27 TCGA-CV-7568-01 7 27142179 27142179 G A HOXA2 5'UTR 0.28 TCGA-CV-7568-01 7 2951812 2951812 G A CARD11 Silent p.A1046A 0.33 TCGA-CV-7568-01 7 32209525 32209525 C A PDE1C Silent p.G60G 0.29 TCGA-CV-7568-01 7 32910196 32910196 C A KBTBD2 Missense_Mutation p.Q211H 0.32 tolerated(0.15) probably_damaging(0.996) TCGA-CV-7568-01 7 33134978 33134978 G A RP9 Silent p.S178S 0.36 TCGA-CV-7568-01 7 34125373 34125373 G A BMPER Missense_Mutation p.E472K 0.50 tolerated(0.41) benign(0.066) TCGA-CV-7568-01 7 35677969 35677969 T A HERPUD2 Missense_Mutation p.Y203F 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 7 37354507 37354507 C T ELMO1 Missense_Mutation p.E47K 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-CV-7568-01 7 38288965 38288965 C T TRGC2 Missense_Mutation p.M70I 0.42 deleterious(0.02) probably_damaging(0.988) TCGA-CV-7568-01 7 38431519 38431519 C T AMPH Missense_Mutation p.E570K 0.45 tolerated(0.18) benign(0.029) TCGA-CV-7568-01 7 38462075 38462075 G A AMPH Silent p.P406P 0.39 TCGA-CV-7568-01 7 38462076 38462076 G A AMPH Missense_Mutation p.P406L 0.39 tolerated(0.18) benign(0.365) TCGA-CV-7568-01 7 39606101 39606101 C G YAE1D1 Silent p.L28L 0.53 TCGA-CV-7568-01 7 42017192 42017192 G A GLI3 Missense_Mutation p.R593C 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 7 43477777 43477777 G A HECW1 Intron 0.30 TCGA-CV-7568-01 7 43832356 43832356 C T BLVRA Silent p.P99P 0.31 TCGA-CV-7568-01 7 44579282 44579282 C T NPC1L1 Silent p.E238E 0.46 TCGA-CV-7568-01 7 45744122 45744122 G A ADCY1 Missense_Mutation p.M908I 0.31 tolerated(0.16) possibly_damaging(0.491) TCGA-CV-7568-01 7 45747965 45747965 C G ADCY1 Missense_Mutation p.S945C 0.28 tolerated(0.15) possibly_damaging(0.781) TCGA-CV-7568-01 7 47408308 47408308 C T TNS3 Silent p.R645R 0.51 TCGA-CV-7568-01 7 47898282 47898282 C T PKD1L1 Missense_Mutation p.D1451N 0.31 tolerated(0.07) benign(0.025) TCGA-CV-7568-01 7 47913532 47913532 G A PKD1L1 Silent p.P1287P 0.47 TCGA-CV-7568-01 7 4798813 4798813 C T FOXK1 Missense_Mutation p.S459F 0.49 tolerated(0.26) benign(0.029) TCGA-CV-7568-01 7 4830308 4830308 G A AP5Z1 Nonsense_Mutation p.W648* 0.59 TCGA-CV-7568-01 7 50450235 50450235 C T IKZF1 Intron 0.34 TCGA-CV-7568-01 7 53104283 53104283 G A POM121L12 3'UTR 0.48 TCGA-CV-7568-01 7 56020908 56020908 C T MRPS17 Missense_Mutation p.S7F 0.50 tolerated(0.13) benign(0.088) TCGA-CV-7568-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.37 TCGA-CV-7568-01 7 62752180 62752180 C T ZNF733P RNA 0.39 TCGA-CV-7568-01 7 63538590 63538590 G A ZNF727 Missense_Mutation p.R388K 0.59 tolerated(0.41) probably_damaging(0.953) TCGA-CV-7568-01 7 65441106 65441106 C T GUSB Missense_Mutation p.V270M 0.20 deleterious(0.02) benign(0.095) TCGA-CV-7568-01 7 65441107 65441107 G A GUSB Silent p.V269V 0.22 TCGA-CV-7568-01 7 66264400 66264400 A T KCTD7 Silent p.T273T 0.67 TCGA-CV-7568-01 7 6851670 6851670 G A CCZ1B Silent p.L289L 0.24 TCGA-CV-7568-01 7 70249984 70249984 C T AUTS2 Missense_Mutation p.L735F 0.49 deleterious(0) probably_damaging(0.964) TCGA-CV-7568-01 7 70880892 70880892 C T WBSCR17 Silent p.L203L 0.25 TCGA-CV-7568-01 7 71743683 71743683 C T CALN1 Missense_Mutation p.E78K 0.30 deleterious(0.02) benign(0.062) TCGA-CV-7568-01 7 72985161 72985161 G A TBL2 Silent p.S340S 0.31 TCGA-CV-7568-01 7 72985581 72985581 G A TBL2 Silent p.A272A 0.32 TCGA-CV-7568-01 7 73008569 73008569 G A MLXIPL Intron 0.47 TCGA-CV-7568-01 7 73474493 73474493 G A ELN Missense_Mutation p.V534M 0.44 unknown(0) TCGA-CV-7568-01 7 74114524 74114524 C T GTF2I Intron 0.21 TCGA-CV-7568-01 7 7480428 7480428 C T COL28A1 Missense_Mutation p.G572E 0.41 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 7 75044200 75044200 C T POM121C 3'Flank 0.29 TCGA-CV-7568-01 7 75442721 75442721 G A CCL24 Missense_Mutation p.P32S 0.25 tolerated(1) benign(0) TCGA-CV-7568-01 7 75513015 75513015 G A RHBDD2 Splice_Site p.X196_splice 0.59 TCGA-CV-7568-01 7 76610332 76610332 C T UPK3B Intron 0.42 TCGA-CV-7568-01 7 76610333 76610333 C A UPK3B Intron 0.43 TCGA-CV-7568-01 7 77240341 77240341 C T PTPN12 Missense_Mutation p.A306V 0.39 tolerated(0.31) benign(0.001) TCGA-CV-7568-01 7 77240343 77240343 C T PTPN12 Nonsense_Mutation p.Q307* 0.38 TCGA-CV-7568-01 7 80546088 80546088 G A SEMA3C Missense_Mutation p.R4W 0.44 tolerated(0.05) benign(0.075) TCGA-CV-7568-01 7 82763683 82763683 G A PCLO Silent p.L1061L 0.41 TCGA-CV-7568-01 7 84666252 84666252 G A SEMA3D Missense_Mutation p.R382C 0.36 deleterious(0.01) benign(0.008) TCGA-CV-7568-01 7 86539170 86539170 C T KIAA1324L Missense_Mutation p.A773T 0.42 tolerated(0.35) benign(0.09) TCGA-CV-7568-01 7 88847469 88847469 G A ZNF804B Missense_Mutation p.D37N 0.37 deleterious(0.01) possibly_damaging(0.859) TCGA-CV-7568-01 7 88963595 88963595 C T ZNF804B Silent p.T433T 0.50 TCGA-CV-7568-01 7 88966298 88966298 G A ZNF804B Silent p.Q1334Q 0.29 TCGA-CV-7568-01 7 92826823 92826823 T A HEPACAM2 Silent p.L371L 0.45 TCGA-CV-7568-01 7 92848478 92848478 C T HEPACAM2 Silent p.V122V 0.54 TCGA-CV-7568-01 7 92983007 92983007 C T CCDC132 Missense_Mutation p.P840L 0.42 deleterious(0) probably_damaging(0.993) TCGA-CV-7568-01 7 94053707 94053707 C T COL1A2 Silent p.L875L 0.22 TCGA-CV-7568-01 7 94053708 94053708 C T COL1A2 Missense_Mutation p.P876S 0.22 unknown(0) TCGA-CV-7568-01 7 95606909 95606909 G A DYNC1I1 Silent p.K209K 0.46 TCGA-CV-7568-01 7 97861194 97861194 G A TECPR1 Silent p.A632A 0.39 TCGA-CV-7568-01 7 97861195 97861195 G A TECPR1 Missense_Mutation p.A632V 0.39 tolerated(0.21) possibly_damaging(0.698) TCGA-CV-7568-01 7 99097782 99097782 G A ZNF394 5'UTR 0.22 TCGA-CV-7568-01 7 99654655 99654655 C T ZSCAN21 Missense_Mutation p.A9V 0.33 deleterious(0.03) possibly_damaging(0.479) TCGA-CV-7568-01 7 99654656 99654656 C T ZSCAN21 Silent p.A9A 0.34 TCGA-CV-7568-01 8 100829876 100829876 C T VPS13B Missense_Mutation p.H2761Y 0.33 tolerated(0.18) benign(0.152) TCGA-CV-7568-01 8 10469725 10469725 G A RP1L1 Missense_Mutation p.P628L 0.44 benign(0.008) TCGA-CV-7568-01 8 10469726 10469726 G A RP1L1 Missense_Mutation p.P628S 0.43 benign(0.115) TCGA-CV-7568-01 8 104897788 104897788 G A RIMS2 Missense_Mutation p.E321K 0.24 deleterious_low_confidence(0.02) benign(0.381) TCGA-CV-7568-01 8 104955149 104955149 T G RIMS2 Missense_Mutation p.L899W 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-7568-01 8 105257206 105257206 G A RIMS2 Missense_Mutation p.E1133K 0.35 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CV-7568-01 8 10557944 10557944 G C C8orf74 Missense_Mutation p.R283T 0.18 deleterious(0.01) benign(0.004) TCGA-CV-7568-01 8 107782411 107782411 G A ABRA Missense_Mutation p.P3L 0.23 deleterious_low_confidence(0) benign(0.035) TCGA-CV-7568-01 8 107782412 107782412 G A ABRA Missense_Mutation p.P3S 0.23 deleterious_low_confidence(0.02) benign(0.056) TCGA-CV-7568-01 8 109001352 109001352 C T RSPO2 Missense_Mutation p.G72E 0.43 deleterious(0) probably_damaging(0.983) TCGA-CV-7568-01 8 109001353 109001353 C T RSPO2 Missense_Mutation p.G72R 0.42 deleterious(0) probably_damaging(0.991) TCGA-CV-7568-01 8 109491300 109491300 T G EMC2 Nonsense_Mutation p.Y256* 0.43 TCGA-CV-7568-01 8 11188892 11188892 C T SLC35G5 Missense_Mutation p.P93S 0.29 tolerated(0.18) probably_damaging(1) TCGA-CV-7568-01 8 113277674 113277674 A G CSMD3 Silent p.N3218N 0.30 TCGA-CV-7568-01 8 113697683 113697683 G A CSMD3 Nonsense_Mutation p.Q812* 0.35 TCGA-CV-7568-01 8 113697867 113697867 C T CSMD3 Silent p.T750T 0.38 TCGA-CV-7568-01 8 113812430 113812430 C T CSMD3 Missense_Mutation p.E645K 0.31 tolerated(0.12) probably_damaging(0.934) TCGA-CV-7568-01 8 114290923 114290923 A G CSMD3 Missense_Mutation p.F138L 0.32 deleterious(0.04) benign(0.044) TCGA-CV-7568-01 8 11687925 11687925 C T FDFT1 Missense_Mutation p.P292L 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 8 118533124 118533124 C T MED30 Silent p.T3T 0.50 TCGA-CV-7568-01 8 120577144 120577144 C T ENPP2 Missense_Mutation p.R780K 0.28 tolerated(0.08) benign(0.051) TCGA-CV-7568-01 8 124195487 124195487 G A FAM83A Missense_Mutation p.E131K 0.32 tolerated(0.2) possibly_damaging(0.744) TCGA-CV-7568-01 8 126011789 126011789 C T SQLE Silent p.H48H 0.19 TCGA-CV-7568-01 8 131949383 131949383 C T ADCY8 Missense_Mutation p.E473K 0.38 deleterious(0.03) possibly_damaging(0.486) TCGA-CV-7568-01 8 133885314 133885314 G A TG Silent p.R162R 0.26 TCGA-CV-7568-01 8 139160871 139160871 T C FAM135B Missense_Mutation p.S1114G 0.32 deleterious(0) probably_damaging(0.99) TCGA-CV-7568-01 8 139160925 139160925 A G FAM135B Missense_Mutation p.Y1096H 0.46 tolerated(0.08) possibly_damaging(0.453) TCGA-CV-7568-01 8 139611072 139611072 G A COL22A1 Missense_Mutation p.P1419S 0.36 unknown(0) TCGA-CV-7568-01 8 139611073 139611073 G A COL22A1 Silent p.I1418I 0.35 TCGA-CV-7568-01 8 142161893 142161893 T A DENND3 Missense_Mutation p.F264Y 0.35 tolerated(0.06) probably_damaging(0.999) TCGA-CV-7568-01 8 142481271 142481271 C T MROH5 3'UTR 0.36 TCGA-CV-7568-01 8 142506529 142506529 C T MROH5 Silent p.R16R 0.24 TCGA-CV-7568-01 8 142506530 142506530 C T MROH5 Missense_Mutation p.R16K 0.23 tolerated(0.72) benign(0.005) TCGA-CV-7568-01 8 143866623 143866623 C T LY6D 3'UTR 0.20 TCGA-CV-7568-01 8 144124661 144124661 G A C8orf31 Nonsense_Mutation p.W56* 0.38 TCGA-CV-7568-01 8 144124662 144124662 G T C8orf31 Nonsense_Mutation p.E57* 0.38 TCGA-CV-7568-01 8 144557717 144557717 C T ZC3H3 Missense_Mutation p.G585E 0.37 tolerated(0.12) possibly_damaging(0.494) TCGA-CV-7568-01 8 144645141 144645141 C T GSDMD 3'UTR 0.33 TCGA-CV-7568-01 8 144887383 144887383 G A SCRIB Missense_Mutation p.L857F 0.50 possibly_damaging(0.642) TCGA-CV-7568-01 8 144887384 144887384 G A SCRIB Silent p.P856P 0.56 TCGA-CV-7568-01 8 144942786 144942786 C T EPPK1 Missense_Mutation p.E1546K 0.45 benign(0.101) TCGA-CV-7568-01 8 144991690 144991690 G A PLEC Missense_Mutation p.T4237I 0.39 probably_damaging(0.999) TCGA-CV-7568-01 8 145001681 145001681 G A PLEC Missense_Mutation p.P1355L 0.46 unknown(0) TCGA-CV-7568-01 8 145139721 145139721 C T GPAA1 Silent p.V369V 0.38 TCGA-CV-7568-01 8 145535877 145535877 C T HSF1 Silent p.S363S 0.32 TCGA-CV-7568-01 8 145661199 145661199 G A TONSL Missense_Mutation p.R873C 0.34 deleterious(0.01) possibly_damaging(0.634) TCGA-CV-7568-01 8 145661200 145661200 G A TONSL Silent p.P872P 0.34 TCGA-CV-7568-01 8 1497038 1497038 C T DLGAP2 Missense_Mutation p.S60L 0.38 deleterious(0.02) probably_damaging(0.969) TCGA-CV-7568-01 8 1626530 1626530 C T DLGAP2 Silent p.T733T 0.34 TCGA-CV-7568-01 8 1808226 1808226 C T ARHGEF10 Silent p.L119L 0.44 TCGA-CV-7568-01 8 18729812 18729812 G A PSD3 Missense_Mutation p.P188S 0.28 tolerated_low_confidence(0.1) benign(0.064) TCGA-CV-7568-01 8 20004780 20004780 C T SLC18A1 Missense_Mutation p.E485K 0.37 deleterious(0.02) benign(0.11) TCGA-CV-7568-01 8 22054265 22054265 C T BMP1 Missense_Mutation p.P613L 0.39 tolerated(0.12) benign(0.243) TCGA-CV-7568-01 8 22106602 22106602 C T POLR3D Missense_Mutation p.A234V 0.58 tolerated(0.28) benign(0.001) TCGA-CV-7568-01 8 22161620 22161620 A C PIWIL2 Missense_Mutation p.N423T 0.40 deleterious(0) probably_damaging(0.965) TCGA-CV-7568-01 8 22173806 22173806 G A PIWIL2 Missense_Mutation p.G753S 0.28 tolerated(0.13) benign(0.077) TCGA-CV-7568-01 8 22173807 22173807 G A PIWIL2 Missense_Mutation p.G753D 0.28 deleterious(0.04) possibly_damaging(0.598) TCGA-CV-7568-01 8 23217678 23217678 C T LOXL2 Silent p.E152E 0.41 TCGA-CV-7568-01 8 24178886 24178886 G A ADAM28 Intron 0.45 TCGA-CV-7568-01 8 24181486 24181486 G A ADAM28 Missense_Mutation p.R287K 0.42 deleterious(0.01) probably_damaging(0.959) TCGA-CV-7568-01 8 27278228 27278228 G A PTK2B Silent p.E146E 0.31 TCGA-CV-7568-01 8 27312077 27312077 C T PTK2B Silent p.I921I 0.47 TCGA-CV-7568-01 8 2808744 2808744 A T CSMD1 Missense_Mutation p.L3365I 0.21 benign(0.431) TCGA-CV-7568-01 8 28196631 28196631 G A PNOC Silent p.R67R 0.35 TCGA-CV-7568-01 8 28218604 28218604 G A ZNF395 Missense_Mutation p.S13F 0.35 deleterious(0) unknown(0) TCGA-CV-7568-01 8 28876342 28876342 C T HMBOX1 Missense_Mutation p.P255S 0.43 tolerated(0.51) possibly_damaging(0.574) TCGA-CV-7568-01 8 28904909 28904909 C T HMBOX1 Silent p.S323S 0.36 TCGA-CV-7568-01 8 2967749 2967749 G A CSMD1 Missense_Mutation p.P2180L 0.35 benign(0.06) TCGA-CV-7568-01 8 2975987 2975987 G T CSMD1 Missense_Mutation p.H2122N 0.38 benign(0.138) TCGA-CV-7568-01 8 30620834 30620834 G A UBXN8 RNA 0.25 TCGA-CV-7568-01 8 3216688 3216688 A C CSMD1 Missense_Mutation p.L1097R 0.29 probably_damaging(1) TCGA-CV-7568-01 8 35402036 35402036 C T UNC5D Intron 0.37 TCGA-CV-7568-01 8 35453130 35453130 G A UNC5D Missense_Mutation p.M175I 0.38 tolerated(0.1) possibly_damaging(0.786) TCGA-CV-7568-01 8 36793292 36793292 C T KCNU1 Missense_Mutation p.P1102S 0.44 tolerated_low_confidence(0.76) benign(0) TCGA-CV-7568-01 8 37688263 37688263 C T GPR124 Missense_Mutation p.P252S 0.33 deleterious(0) probably_damaging(0.988) TCGA-CV-7568-01 8 37688398 37688398 C T GPR124 Missense_Mutation p.L297F 0.46 tolerated(0.81) benign(0.258) TCGA-CV-7568-01 8 37702243 37702243 G A BRF2 Missense_Mutation p.S342F 0.39 deleterious(0.03) benign(0.187) TCGA-CV-7568-01 8 38871527 38871527 G A ADAM9 Missense_Mutation p.E100K 0.41 tolerated(0.32) benign(0.042) TCGA-CV-7568-01 8 39785653 39785653 C T IDO1 Silent p.F387F 0.40 TCGA-CV-7568-01 8 42046585 42046585 G A PLAT Silent p.I40I 0.47 TCGA-CV-7568-01 8 42940390 42940390 A T FNTA Missense_Mutation p.T369S 0.39 tolerated(0.24) benign(0) TCGA-CV-7568-01 8 42940391 42940391 C T FNTA Missense_Mutation p.T369I 0.38 tolerated(0.09) benign(0.011) TCGA-CV-7568-01 8 43159892 43159892 C T RNU6-104P 3'Flank 0.42 TCGA-CV-7568-01 8 48826618 48826618 G A PRKDC Missense_Mutation p.S875F 0.34 probably_damaging(0.914) TCGA-CV-7568-01 8 51617306 51617306 G A SNTG1 Silent p.R395R 0.43 TCGA-CV-7568-01 8 53073958 53073958 C T ST18 Missense_Mutation p.R524Q 0.27 tolerated(0.72) benign(0.007) TCGA-CV-7568-01 8 53126851 53126851 C T ST18 Splice_Site 0.43 TCGA-CV-7568-01 8 53452429 53452429 C T FAM150A Missense_Mutation p.R96Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 8 54147344 54147344 G A OPRK1 Silent p.V195V 0.23 TCGA-CV-7568-01 8 55538529 55538529 T C RP1 Missense_Mutation p.L696P 0.44 tolerated(0.48) benign(0.003) TCGA-CV-7568-01 8 55541534 55541534 G A RP1 Missense_Mutation p.E1698K 0.37 tolerated(0.1) benign(0.338) TCGA-CV-7568-01 8 56912075 56912075 G A LYN Missense_Mutation p.E435K 0.42 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 8 59359986 59359986 C T UBXN2B Missense_Mutation p.P291L 0.38 deleterious(0) probably_damaging(0.969) TCGA-CV-7568-01 8 61741254 61741254 C T CHD7 Silent p.L1137L 0.39 TCGA-CV-7568-01 8 62212563 62212563 G A CLVS1 Missense_Mutation p.M59I 0.29 tolerated(0.14) benign(0.262) TCGA-CV-7568-01 8 62212800 62212800 G A CLVS1 Silent p.R138R 0.46 TCGA-CV-7568-01 8 6303035 6303035 G T MCPH1 Nonsense_Mutation p.E598* 0.36 TCGA-CV-7568-01 8 66992705 66992705 G A DNAJC5B Missense_Mutation p.E143K 0.56 tolerated(1) benign(0) TCGA-CV-7568-01 8 6782289 6782289 C T DEFA6 3'UTR 0.40 TCGA-CV-7568-01 8 68145181 68145181 C T ARFGEF1 Splice_Site p.X1097_splice 0.36 TCGA-CV-7568-01 8 68334806 68334806 G A CPA6 Missense_Mutation p.P416L 0.39 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 8 69552622 69552622 G A C8orf34 Missense_Mutation p.D373N 0.43 tolerated(0.1) benign(0.23) TCGA-CV-7568-01 8 70501299 70501299 C T SULF1 Silent p.I219I 0.45 TCGA-CV-7568-01 8 72111619 72111619 C A EYA1 Missense_Mutation p.D579Y 0.24 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 8 72756324 72756324 G A MSC Silent p.P30P 0.43 TCGA-CV-7568-01 8 72958801 72958801 T G TRPA1 Missense_Mutation p.T670P 0.38 tolerated(0.09) possibly_damaging(0.649) TCGA-CV-7568-01 8 73849557 73849557 G A KCNB2 Missense_Mutation p.R656K 0.35 tolerated_low_confidence(0.92) benign(0.005) TCGA-CV-7568-01 8 73958353 73958353 C T TERF1 Missense_Mutation p.S434F 0.26 tolerated(0.05) benign(0.005) TCGA-CV-7568-01 8 73979610 73979610 G A SBSPON Missense_Mutation p.S254F 0.32 deleterious(0) probably_damaging(0.975) TCGA-CV-7568-01 8 76472686 76472686 C T HNF4G Missense_Mutation p.H401Y 0.33 tolerated(0.26) possibly_damaging(0.61) TCGA-CV-7568-01 8 80679807 80679807 C T HEY1 Intron 0.75 TCGA-CV-7568-01 8 82395376 82395376 C T FABP4 Nonsense_Mutation p.W9* 0.28 TCGA-CV-7568-01 8 82627224 82627224 C T ZFAND1 Silent p.L88L 0.37 TCGA-CV-7568-01 8 8750010 8750010 C T MFHAS1 Missense_Mutation p.D187N 0.44 tolerated(0.31) possibly_damaging(0.883) TCGA-CV-7568-01 8 8750011 8750011 C T MFHAS1 Silent p.L186L 0.47 TCGA-CV-7568-01 8 87588325 87588325 C T CNGB3 Missense_Mutation p.G713R 0.27 tolerated(0.23) benign(0.002) TCGA-CV-7568-01 8 89179954 89179954 C T MMP16 Missense_Mutation p.G218E 0.41 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 8 89209496 89209496 G A MMP16 Missense_Mutation p.P58S 0.30 tolerated(0.46) probably_damaging(0.94) TCGA-CV-7568-01 8 90958431 90958431 G A NBN Silent p.S669S 0.28 TCGA-CV-7568-01 8 90958432 90958432 G A NBN Missense_Mutation p.S669F 0.27 tolerated(0.34) benign(0.265) TCGA-CV-7568-01 8 92007924 92007924 G A TMEM55A Missense_Mutation p.P252L 0.29 tolerated(0.45) probably_damaging(0.981) TCGA-CV-7568-01 8 92007925 92007925 G A TMEM55A Missense_Mutation p.P252S 0.29 tolerated(0.07) probably_damaging(0.968) TCGA-CV-7568-01 8 92401586 92401586 C T SLC26A7 Missense_Mutation p.P566S 0.31 tolerated(0.72) benign(0.006) TCGA-CV-7568-01 8 93017469 93017469 C T RUNX1T1 Silent p.Q216Q 0.48 TCGA-CV-7568-01 8 94746055 94746055 G A RBM12B Missense_Mutation p.P862S 0.42 tolerated(0.12) benign(0.002) TCGA-CV-7568-01 8 94747912 94747912 C T RBM12B Missense_Mutation p.E243K 0.38 tolerated(0.6) benign(0.007) TCGA-CV-7568-01 8 97892030 97892030 C T CPQ Missense_Mutation p.H216Y 0.37 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 8 98289703 98289703 C T TSPYL5 Missense_Mutation p.G124R 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-CV-7568-01 9 101782716 101782716 G A COL15A1 Missense_Mutation p.G565R 0.53 tolerated(0.09) benign(0.443) TCGA-CV-7568-01 9 101807031 101807031 G T COL15A1 Missense_Mutation p.M886I 0.82 tolerated(0.48) benign(0.007) TCGA-CV-7568-01 9 101900209 101900209 C T TGFBR1 Nonsense_Mutation p.R215* 0.78 TCGA-CV-7568-01 9 104171026 104171026 C T ZNF189 Nonsense_Mutation p.R326* 0.83 TCGA-CV-7568-01 9 104449125 104449125 G A GRIN3A Missense_Mutation p.R353C 0.82 deleterious(0.02) benign(0.386) TCGA-CV-7568-01 9 106891979 106891979 T C SMC2 Silent p.F948F 0.79 TCGA-CV-7568-01 9 107266939 107266939 C T OR13F1 Silent p.Y132Y 0.78 TCGA-CV-7568-01 9 113168896 113168896 C T SVEP1 Nonsense_Mutation p.W2995* 0.60 TCGA-CV-7568-01 9 113173407 113173407 G A SVEP1 Missense_Mutation p.P2195L 0.57 possibly_damaging(0.507) TCGA-CV-7568-01 9 113173408 113173408 G A SVEP1 Missense_Mutation p.P2195S 0.56 benign(0.05) TCGA-CV-7568-01 9 115760001 115760001 G A ZNF883 RNA 0.76 TCGA-CV-7568-01 9 115760065 115760065 C T ZNF883 RNA 0.82 TCGA-CV-7568-01 9 116930839 116930839 C T COL27A1 Missense_Mutation p.P335L 0.78 unknown(0) TCGA-CV-7568-01 9 123797116 123797116 G A C5 Silent p.I183I 0.71 TCGA-CV-7568-01 9 123920258 123920258 T G CNTRL Intron 0.75 TCGA-CV-7568-01 9 124103397 124103397 G A STOM 3'UTR 0.85 TCGA-CV-7568-01 9 125588973 125588973 G A PDCL Nonsense_Mutation p.R32* 0.74 TCGA-CV-7568-01 9 126137568 126137568 G A CRB2 Silent p.G1193G 0.68 TCGA-CV-7568-01 9 12708017 12708017 G A TYRP1 Missense_Mutation p.E428K 0.67 tolerated(0.11) possibly_damaging(0.698) TCGA-CV-7568-01 9 128124962 128124962 C T GAPVD1 Silent p.S1467S 0.60 TCGA-CV-7568-01 9 131117375 131117375 C T SLC27A4 Silent p.P456P 0.78 TCGA-CV-7568-01 9 131191230 131191230 C T CERCAM Missense_Mutation p.R329C 0.77 deleterious(0) probably_damaging(0.951) TCGA-CV-7568-01 9 131362396 131362396 T G SPTAN1 Splice_Site p.X1193_splice 0.72 TCGA-CV-7568-01 9 131719260 131719260 A T RP11-101E3.5 Missense_Mutation p.L113F 0.67 deleterious(0) probably_damaging(0.971) TCGA-CV-7568-01 9 131899914 131899914 C T PPP2R4 Silent p.A243A 0.72 TCGA-CV-7568-01 9 132689581 132689581 C T FNBP1 Missense_Mutation p.G228R 0.67 tolerated(0.25) benign(0.01) TCGA-CV-7568-01 9 132891023 132891023 C T GPR107 Silent p.D563D 0.72 TCGA-CV-7568-01 9 134136313 134136313 G A FAM78A Missense_Mutation p.P250S 0.81 deleterious(0.03) benign(0.177) TCGA-CV-7568-01 9 137677851 137677851 G A COL5A1 Missense_Mutation p.G868E 0.73 unknown(0) TCGA-CV-7568-01 9 138012069 138012069 G A OLFM1 3'UTR 0.74 TCGA-CV-7568-01 9 138376850 138376850 C T PPP1R26 Missense_Mutation p.A165V 0.82 tolerated(0.23) possibly_damaging(0.866) TCGA-CV-7568-01 9 138684057 138684057 G A KCNT1 3'UTR 0.64 TCGA-CV-7568-01 9 139411742 139411742 G A NOTCH1 Nonsense_Mutation p.Q513* 0.87 TCGA-CV-7568-01 9 140033924 140033924 C T GRIN1 5'Flank 0.88 TCGA-CV-7568-01 9 140056969 140056969 G A GRIN1 Splice_Site p.X643_splice 0.92 TCGA-CV-7568-01 9 140391670 140391670 C T PNPLA7 Missense_Mutation p.G661E 0.53 deleterious(0) probably_damaging(0.959) TCGA-CV-7568-01 9 140391671 140391671 C T PNPLA7 Missense_Mutation p.G661R 0.53 deleterious(0) probably_damaging(0.979) TCGA-CV-7568-01 9 141016177 141016177 C T CACNA1B Missense_Mutation p.A2249V 0.68 tolerated(0.15) benign(0.057) TCGA-CV-7568-01 9 14808111 14808111 G A FREM1 Missense_Mutation p.P972L 0.76 deleterious(0.01) benign(0.062) TCGA-CV-7568-01 9 14868816 14868816 C T FREM1 Missense_Mutation p.E54K 0.85 tolerated(0.08) benign(0.04) TCGA-CV-7568-01 9 15190562 15190562 G A TTC39B Silent p.S365S 0.65 TCGA-CV-7568-01 9 19358055 19358055 G A DENND4C Missense_Mutation p.R1637Q 0.67 deleterious(0) benign(0.366) TCGA-CV-7568-01 9 2039700 2039700 C T SMARCA2 Missense_Mutation p.P197L 0.85 probably_damaging(0.997) TCGA-CV-7568-01 9 21206798 21206798 C T IFNA10 Nonsense_Mutation p.W100* 0.68 TCGA-CV-7568-01 9 21971096 21971096 C T CDKN2A Missense_Mutation p.E88K 0.75 deleterious(0.04) probably_damaging(0.918) TCGA-CV-7568-01 9 32633160 32633160 G A TAF1L Silent p.P806P 0.71 TCGA-CV-7568-01 9 34662669 34662669 C T CCL27 5'UTR 0.79 TCGA-CV-7568-01 9 35711042 35711042 A C TLN1 Missense_Mutation p.C1353G 0.54 deleterious(0) probably_damaging(0.985) TCGA-CV-7568-01 9 35800799 35800799 C T NPR2 Missense_Mutation p.P438S 0.61 tolerated(0.63) benign(0.042) TCGA-CV-7568-01 9 35800800 35800800 C T NPR2 Missense_Mutation p.P438L 0.61 tolerated(0.33) benign(0.014) TCGA-CV-7568-01 9 406991 406991 C T DOCK8 Missense_Mutation p.S1151F 0.80 tolerated(0.7) benign(0.139) TCGA-CV-7568-01 9 406992 406992 C T DOCK8 Silent p.S1151S 0.80 TCGA-CV-7568-01 9 5164203 5164203 C T INSL6 Missense_Mutation p.D118N 0.82 tolerated(0.12) benign(0) TCGA-CV-7568-01 9 6533117 6533117 C T GLDC Missense_Mutation p.R988Q 0.79 deleterious(0) probably_damaging(0.996) TCGA-CV-7568-01 9 71869364 71869364 G A AL358113.1 Silent p.T93T 0.90 TCGA-CV-7568-01 9 73235150 73235150 G A TRPM3 Silent p.L645L 0.77 TCGA-CV-7568-01 9 73398993 73398993 C T TRPM3 Intron 0.67 TCGA-CV-7568-01 9 77416931 77416931 C T TRPM6 Missense_Mutation p.G631E 0.72 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 9 77416932 77416932 C T TRPM6 Missense_Mutation p.G631R 0.75 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 9 77631274 77631274 C T C9orf41 Missense_Mutation p.R167K 0.75 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 9 84532882 84532882 G A SPATA31D5P RNA 0.57 TCGA-CV-7568-01 9 85627420 85627420 C T RASEF Missense_Mutation p.E258K 0.82 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 9 93375924 93375924 C T DIRAS2 Silent p.T62T 0.73 TCGA-CV-7568-01 9 93983201 93983201 G A AUH Silent p.L243L 0.63 TCGA-CV-7568-01 9 96019254 96019254 C G WNK2 Missense_Mutation p.P739A 0.75 unknown(0) TCGA-CV-7568-01 9 96055202 96055202 C T WNK2 Missense_Mutation p.P1856S 0.86 unknown(0) TCGA-CV-7568-01 X 100117396 100117396 C T NOX1 Missense_Mutation p.G219E 0.32 deleterious(0.01) possibly_damaging(0.694) TCGA-CV-7568-01 X 100334063 100334063 G A TMEM35 Silent p.G24G 0.59 TCGA-CV-7568-01 X 100547782 100547782 C T TAF7L Silent p.G84G 0.52 TCGA-CV-7568-01 X 100666951 100666951 T G RPL36A-HNRNPH2 Missense_Mutation p.L121V 0.43 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-7568-01 X 100667349 100667349 G A HNRNPH2 Missense_Mutation p.E125K 0.46 tolerated(0.08) benign(0.158) TCGA-CV-7568-01 X 10085584 10085584 C T WWC3 Silent p.A495A 0.57 TCGA-CV-7568-01 X 10085585 10085585 C T WWC3 Silent p.L496L 0.54 TCGA-CV-7568-01 X 101139505 101139505 C T ZMAT1 Silent p.K298K 0.30 TCGA-CV-7568-01 X 101581424 101581424 C T NXF2 Missense_Mutation p.S626F 0.15 deleterious_low_confidence(0) benign(0.364) TCGA-CV-7568-01 X 101911582 101911582 G A GPRASP1 Missense_Mutation p.G914E 0.39 tolerated(0.17) benign(0.113) TCGA-CV-7568-01 X 101969893 101969893 C T GPRASP2 Silent p.V32V 0.45 TCGA-CV-7568-01 X 101971499 101971499 C T GPRASP2 Nonsense_Mutation p.R568* 0.40 TCGA-CV-7568-01 X 102339350 102339350 C T NXF3 Missense_Mutation p.E91K 0.39 tolerated(1) benign(0.275) TCGA-CV-7568-01 X 102612735 102612735 A C WBP5 Silent p.A41A 0.42 TCGA-CV-7568-01 X 102755419 102755419 C T RAB40A Missense_Mutation p.G89E 0.32 deleterious(0) probably_damaging(0.928) TCGA-CV-7568-01 X 103359851 103359851 C T ZCCHC18 Missense_Mutation p.S350L 0.29 tolerated(0.05) benign(0.046) TCGA-CV-7568-01 X 104440200 104440200 G A IL1RAPL2 Missense_Mutation p.M42I 0.52 tolerated(0.05) benign(0.247) TCGA-CV-7568-01 X 104728346 104728346 G A IL1RAPL2 Missense_Mutation p.E247K 0.52 tolerated(0.14) benign(0.135) TCGA-CV-7568-01 X 105153194 105153194 C T NRK Nonsense_Mutation p.Q522* 0.33 TCGA-CV-7568-01 X 105279276 105279276 C T SERPINA7 Missense_Mutation p.M241I 0.44 tolerated(0.24) benign(0.001) TCGA-CV-7568-01 X 105281078 105281078 G A SERPINA7 5'UTR 0.30 TCGA-CV-7568-01 X 105879862 105879862 G A CXorf57 Missense_Mutation p.G465R 0.42 tolerated(0.57) benign(0) TCGA-CV-7568-01 X 106808122 106808122 G A FRMPD3 Silent p.E407E 0.44 TCGA-CV-7568-01 X 107430382 107430382 G A COL4A6 Missense_Mutation p.P633L 0.45 probably_damaging(0.994) TCGA-CV-7568-01 X 107823795 107823795 T G COL4A5 Silent p.P271P 0.36 TCGA-CV-7568-01 X 107823796 107823796 C T COL4A5 Missense_Mutation p.P272S 0.36 unknown(0) TCGA-CV-7568-01 X 107834372 107834372 C T COL4A5 Missense_Mutation p.S417F 0.51 unknown(0) TCGA-CV-7568-01 X 107920799 107920799 C T COL4A5 Missense_Mutation p.P1293L 0.48 probably_damaging(0.958) TCGA-CV-7568-01 X 107977792 107977792 C T IRS4 Missense_Mutation p.G595R 0.35 tolerated_low_confidence(0.06) unknown(0) TCGA-CV-7568-01 X 107979238 107979238 C T IRS4 Missense_Mutation p.E113K 0.42 deleterious(0.02) benign(0.097) TCGA-CV-7568-01 X 108718439 108718439 G A GUCY2F Missense_Mutation p.R243C 0.40 deleterious(0) possibly_damaging(0.636) TCGA-CV-7568-01 X 109560968 109560968 G A AMMECR1 Missense_Mutation p.S111L 0.53 tolerated_low_confidence(0.47) benign(0) TCGA-CV-7568-01 X 110494250 110494250 C T CAPN6 Silent p.K351K 0.48 TCGA-CV-7568-01 X 110494328 110494328 C A CAPN6 Missense_Mutation p.M325I 0.35 deleterious(0.02) benign(0) TCGA-CV-7568-01 X 110966071 110966071 G A ALG13 Missense_Mutation p.G496R 0.31 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 X 114239801 114239801 T C IL13RA2 Missense_Mutation p.T359A 0.47 tolerated(1) benign(0.004) TCGA-CV-7568-01 X 117106771 117106771 C T KLHL13 Intron 0.44 TCGA-CV-7568-01 X 117480336 117480336 C T WDR44 5'UTR 0.42 TCGA-CV-7568-01 X 117712611 117712611 G A DOCK11 Splice_Site p.X504_splice 0.38 TCGA-CV-7568-01 X 118124489 118124489 G A LONRF3 Missense_Mutation p.D461N 0.50 deleterious(0.03) probably_damaging(0.98) TCGA-CV-7568-01 X 118281446 118281446 C T KIAA1210 Missense_Mutation p.D134N 0.45 tolerated_low_confidence(0.08) benign(0.002) TCGA-CV-7568-01 X 118281447 118281447 C T KIAA1210 Silent p.Q133Q 0.45 TCGA-CV-7568-01 X 118585997 118585997 G A SLC25A43 Missense_Mutation p.S239N 0.34 tolerated(0.31) benign(0.002) TCGA-CV-7568-01 X 118723541 118723541 G A NKRF Missense_Mutation p.S631F 0.38 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 X 118753947 118753947 G A SEPT6 Intron 0.44 TCGA-CV-7568-01 X 118753948 118753948 G A SEPT6 Intron 0.44 TCGA-CV-7568-01 X 118920696 118920696 C T RPL39 Splice_Site p.X36_splice 0.44 TCGA-CV-7568-01 X 118971739 118971739 C T UPF3B Missense_Mutation p.R428K 0.28 tolerated(0.67) possibly_damaging(0.815) TCGA-CV-7568-01 X 119293316 119293316 C T RHOXF2 Missense_Mutation p.P159S 0.42 deleterious(0) possibly_damaging(0.824) TCGA-CV-7568-01 X 120008876 120008876 C T CT47B1 Missense_Mutation p.E217K 0.39 tolerated(0.35) unknown(0) TCGA-CV-7568-01 X 120008973 120008973 G A CT47B1 Silent p.G184G 0.45 TCGA-CV-7568-01 X 120182995 120182995 C T GLUD2 Missense_Mutation p.P486L 0.40 deleterious(0.03) benign(0.145) TCGA-CV-7568-01 X 122551587 122551587 C T GRIA3 Missense_Mutation p.S612F 0.47 deleterious(0) probably_damaging(0.942) TCGA-CV-7568-01 X 122755258 122755258 C T THOC2 Silent p.P1322P 0.43 TCGA-CV-7568-01 X 123217344 123217344 C T STAG2 Missense_Mutation p.L1000F 0.38 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 X 123517859 123517859 G A TENM1 Missense_Mutation p.H2308Y 0.35 deleterious(0.03) possibly_damaging(0.773) TCGA-CV-7568-01 X 123518366 123518366 G A TENM1 Missense_Mutation p.R2139C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 X 123630900 123630900 G A TENM1 Missense_Mutation p.P1221S 0.43 deleterious(0.01) possibly_damaging(0.686) TCGA-CV-7568-01 X 125685766 125685766 C T DCAF12L1 Missense_Mutation p.E276K 0.42 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 X 127185186 127185186 G A ACTRT1 Missense_Mutation p.P334S 0.40 deleterious(0.04) benign(0.058) TCGA-CV-7568-01 X 12809655 12809655 G A PRPS2 Silent p.Q13Q 0.37 TCGA-CV-7568-01 X 128602775 128602775 G A SMARCA1 Silent p.S891S 0.52 TCGA-CV-7568-01 X 12906090 12906090 G A TLR7 Silent p.K821K 0.35 TCGA-CV-7568-01 X 12906091 12906091 G A TLR7 Missense_Mutation p.G822S 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-CV-7568-01 X 129063382 129063382 C T UTP14A Missense_Mutation p.S705F 0.34 tolerated(0.1) benign(0.012) TCGA-CV-7568-01 X 129171506 129171506 G A BCORL1 Silent p.T1490T 0.35 TCGA-CV-7568-01 X 129813718 129813718 G A ENOX2 Silent p.L115L 0.31 TCGA-CV-7568-01 X 130423350 130423350 C T IGSF1 5'UTR 0.54 TCGA-CV-7568-01 X 133378999 133378999 G A CCDC160 Missense_Mutation p.E57K 0.55 deleterious(0.02) possibly_damaging(0.486) TCGA-CV-7568-01 X 134166728 134166728 T C FAM127A Silent p.F105F 0.41 TCGA-CV-7568-01 X 134185754 134185754 C T FAM127B 3'UTR 0.38 TCGA-CV-7568-01 X 134420942 134420942 C T ZNF75D 3'UTR 0.27 TCGA-CV-7568-01 X 134421321 134421321 C T ZNF75D Silent p.G427G 0.41 TCGA-CV-7568-01 X 135323338 135323338 C T MAP7D3 Silent p.A172A 0.55 TCGA-CV-7568-01 X 135956166 135956166 G A RBMX 3'UTR 0.44 TCGA-CV-7568-01 X 138819939 138819939 G A ATP11C Intron 0.29 TCGA-CV-7568-01 X 138825761 138825761 C T ATP11C Missense_Mutation p.G999E 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 X 140969434 140969434 A G MAGEC3 Missense_Mutation p.N254S 0.34 tolerated(0.36) possibly_damaging(0.621) TCGA-CV-7568-01 X 140996585 140996585 C T MAGEC1 Missense_Mutation p.S1132F 0.41 deleterious_low_confidence(0.05) unknown(0) TCGA-CV-7568-01 X 142605181 142605181 C T SPANXN3 Silent p.T13T 0.47 TCGA-CV-7568-01 X 142716803 142716803 C T SLITRK4 Missense_Mutation p.G708R 0.27 tolerated(0.12) benign(0.004) TCGA-CV-7568-01 X 142718348 142718348 G A SLITRK4 Missense_Mutation p.L193F 0.39 tolerated(0.09) possibly_damaging(0.783) TCGA-CV-7568-01 X 144905934 144905934 C T SLITRK2 Missense_Mutation p.S664F 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-CV-7568-01 X 147063088 147063088 G A FMR1NB Missense_Mutation p.G56R 0.37 tolerated(0.15) probably_damaging(0.979) TCGA-CV-7568-01 X 147106430 147106430 G A FMR1NB Silent p.T226T 0.27 TCGA-CV-7568-01 X 147744217 147744217 C T AFF2 Silent p.L323L 0.51 TCGA-CV-7568-01 X 148073008 148073008 G A AFF2 3'UTR 0.69 TCGA-CV-7568-01 X 148568458 148568458 G A IDS Missense_Mutation p.P182L 0.41 tolerated(0.07) benign(0.158) TCGA-CV-7568-01 X 148568459 148568459 G A IDS Missense_Mutation p.P182S 0.42 tolerated(0.49) benign(0.006) TCGA-CV-7568-01 X 148568788 148568788 T A IDS Intron 0.42 TCGA-CV-7568-01 X 148568790 148568790 A T IDS Intron 0.44 TCGA-CV-7568-01 X 148797757 148797757 G A MAGEA11 Missense_Mutation p.G204E 0.52 tolerated(0.2) benign(0.345) TCGA-CV-7568-01 X 150345221 150345221 C T GPR50 Missense_Mutation p.P10S 0.37 deleterious(0.02) benign(0.277) TCGA-CV-7568-01 X 150345222 150345222 C T GPR50 Missense_Mutation p.P10L 0.37 deleterious(0.04) benign(0.277) TCGA-CV-7568-01 X 150773139 150773139 C T PASD1 Missense_Mutation p.S17F 0.65 deleterious(0) probably_damaging(0.939) TCGA-CV-7568-01 X 150832782 150832782 G A PASD1 Missense_Mutation p.D345N 0.51 tolerated(0.16) possibly_damaging(0.534) TCGA-CV-7568-01 X 150869341 150869341 C T PRRG3 Missense_Mutation p.P178S 0.31 tolerated(0.15) possibly_damaging(0.836) TCGA-CV-7568-01 X 150908082 150908082 C T CNGA2 Silent p.F84F 0.40 TCGA-CV-7568-01 X 151092751 151092751 C T MAGEA4 Silent p.I205I 0.50 TCGA-CV-7568-01 X 151283787 151283787 C T RP11-1007I13.4 RNA 0.33 TCGA-CV-7568-01 X 151358325 151358325 C G GABRA3 Missense_Mutation p.W340C 0.53 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 X 151869494 151869494 C T MAGEA6 Missense_Mutation p.P62S 0.49 tolerated(0.16) possibly_damaging(0.517) TCGA-CV-7568-01 X 152113854 152113854 G A ZNF185 Missense_Mutation p.G450R 0.29 tolerated(0.14) benign(0.063) TCGA-CV-7568-01 X 152159281 152159281 G A PNMA5 Missense_Mutation p.R288C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 X 152722630 152722630 G A HAUS7 Silent p.I147I 0.39 TCGA-CV-7568-01 X 152772638 152772638 C T BGN Missense_Mutation p.L302F 0.58 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 X 152830499 152830499 G A ATP2B3 Missense_Mutation p.E1094K 0.45 deleterious(0.03) benign(0.14) TCGA-CV-7568-01 X 152936862 152936862 C T PNCK Intron 0.36 TCGA-CV-7568-01 X 152938046 152938046 C T PNCK Missense_Mutation p.E142K 0.44 tolerated(0.16) possibly_damaging(0.56) TCGA-CV-7568-01 X 152938047 152938047 C T PNCK Silent p.V141V 0.43 TCGA-CV-7568-01 X 152957558 152957558 G A SLC6A8 Missense_Mutation p.G258E 0.48 deleterious(0) probably_damaging(0.994) TCGA-CV-7568-01 X 152981081 152981081 G A BCAP31 Missense_Mutation p.P153L 0.37 tolerated(0.11) possibly_damaging(0.521) TCGA-CV-7568-01 X 153043704 153043704 C T PLXNB3 Intron 0.32 TCGA-CV-7568-01 X 153051682 153051682 G A IDH3G Silent p.S355S 0.38 TCGA-CV-7568-01 X 153130378 153130378 C T L1CAM Missense_Mutation p.D982N 0.43 tolerated(1) benign(0.004) TCGA-CV-7568-01 X 153133365 153133365 C T L1CAM Missense_Mutation p.G610E 0.47 deleterious(0.03) probably_damaging(0.978) TCGA-CV-7568-01 X 153133564 153133564 C T L1CAM Missense_Mutation p.D573N 0.36 tolerated(0.08) possibly_damaging(0.635) TCGA-CV-7568-01 X 153133565 153133565 C T L1CAM Silent p.E572E 0.35 TCGA-CV-7568-01 X 153178233 153178233 A T ARHGAP4 Missense_Mutation p.F528Y 0.40 tolerated(1) benign(0.397) TCGA-CV-7568-01 X 153184378 153184378 G A ARHGAP4 Missense_Mutation p.P354S 0.44 tolerated(0.16) benign(0.282) TCGA-CV-7568-01 X 153205608 153205608 C T RENBP Missense_Mutation p.D342N 0.49 tolerated(0.05) benign(0.027) TCGA-CV-7568-01 X 153220649 153220649 C T HCFC1 Silent p.Q1067Q 0.40 TCGA-CV-7568-01 X 153224146 153224146 G A HCFC1 Silent p.I559I 0.35 TCGA-CV-7568-01 X 153228798 153228798 G A HCFC1 Missense_Mutation p.P197L 0.34 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 X 153228799 153228799 G A HCFC1 Missense_Mutation p.P197S 0.35 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 X 153282473 153282473 G A IRAK1 Missense_Mutation p.L319F 0.33 deleterious(0) probably_damaging(0.993) TCGA-CV-7568-01 X 153296670 153296670 C T MECP2 Silent p.T215T 0.41 TCGA-CV-7568-01 X 15342945 15342945 G A PIGA Missense_Mutation p.L344F 0.42 deleterious(0.05) benign(0.248) TCGA-CV-7568-01 X 15342946 15342946 G A PIGA Silent p.N343N 0.43 TCGA-CV-7568-01 X 153580036 153580036 G A FLNA Silent p.N2312N 0.41 TCGA-CV-7568-01 X 153586662 153586662 C T FLNA Missense_Mutation p.G1554R 0.32 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 X 153590892 153590892 G A FLNA Missense_Mutation p.A820V 0.37 tolerated(0.09) possibly_damaging(0.634) TCGA-CV-7568-01 X 153596373 153596373 G A FLNA Silent p.P153P 0.43 TCGA-CV-7568-01 X 153641566 153641566 C T TAZ Silent p.I87I 0.30 TCGA-CV-7568-01 X 153716489 153716489 G A SLC10A3 Missense_Mutation p.S264L 0.42 deleterious(0.01) possibly_damaging(0.474) TCGA-CV-7568-01 X 154157819 154157819 G A F8 Missense_Mutation p.P1416S 0.50 tolerated(0.27) benign(0.1) TCGA-CV-7568-01 X 154213059 154213059 T G F8 Missense_Mutation p.E230D 0.46 tolerated(0.11) benign(0.259) TCGA-CV-7568-01 X 154290193 154290193 C T CMC4 Silent p.K44K 0.34 TCGA-CV-7568-01 X 17040363 17040363 C T REPS2 Missense_Mutation p.S172F 0.33 tolerated(0.06) benign(0.14) TCGA-CV-7568-01 X 17771378 17771378 G A SCML1 Missense_Mutation p.E286K 0.44 tolerated(0.05) possibly_damaging(0.479) TCGA-CV-7568-01 X 18183239 18183239 C T BEND2 Missense_Mutation p.D764N 0.43 tolerated(0.34) benign(0.022) TCGA-CV-7568-01 X 18972465 18972465 G A PHKA2 Silent p.I48I 0.51 TCGA-CV-7568-01 X 19032136 19032136 G A GPR64 Missense_Mutation p.S256F 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.541) TCGA-CV-7568-01 X 19443774 19443774 C T MAP3K15 Silent p.G438G 0.58 TCGA-CV-7568-01 X 21581440 21581440 G A CNKSR2 Missense_Mutation p.G493E 0.41 tolerated(0.14) benign(0.196) TCGA-CV-7568-01 X 21609287 21609287 C T CNKSR2 Missense_Mutation p.S602F 0.42 deleterious(0) probably_damaging(0.936) TCGA-CV-7568-01 X 21609288 21609288 C T CNKSR2 Silent p.S602S 0.42 TCGA-CV-7568-01 X 21627285 21627285 G A CNKSR2 Missense_Mutation p.E748K 0.46 tolerated(0.27) benign(0.056) TCGA-CV-7568-01 X 21675713 21675713 G A KLHL34 Missense_Mutation p.S65F 0.46 deleterious(0) probably_damaging(0.986) TCGA-CV-7568-01 X 23019811 23019811 G A DDX53 Missense_Mutation p.R546K 0.43 tolerated(0.08) benign(0.088) TCGA-CV-7568-01 X 23353008 23353008 C T PTCHD1 Silent p.L6L 0.36 TCGA-CV-7568-01 X 2407922 2407922 G A ZBED1 Missense_Mutation p.S280F 0.35 deleterious(0) probably_damaging(0.917) TCGA-CV-7568-01 X 26211914 26211914 C T MAGEB6 5'UTR 0.51 TCGA-CV-7568-01 X 26213281 26213281 C T MAGEB6 3'UTR 0.42 TCGA-CV-7568-01 X 27766219 27766219 G A DCAF8L2 Missense_Mutation p.E403K 0.50 tolerated(0.15) benign(0.083) TCGA-CV-7568-01 X 2827949 2827949 G A ARSD Missense_Mutation p.P403S 0.36 deleterious(0.04) possibly_damaging(0.517) TCGA-CV-7568-01 X 29417302 29417302 A T IL1RAPL1 Missense_Mutation p.I194F 0.54 deleterious(0.05) possibly_damaging(0.773) TCGA-CV-7568-01 X 2951409 2951409 C T ARSH Missense_Mutation p.L558F 0.28 tolerated(0.35) benign(0.223) TCGA-CV-7568-01 X 30269432 30269432 G A MAGEB1 Silent p.P274P 0.50 TCGA-CV-7568-01 X 34148303 34148303 C T FAM47A Nonsense_Mutation p.W698* 0.35 TCGA-CV-7568-01 X 34148928 34148928 T C FAM47A Missense_Mutation p.S490G 0.27 tolerated(0.17) probably_damaging(0.916) TCGA-CV-7568-01 X 34149011 34149011 G A FAM47A Missense_Mutation p.P462L 0.29 tolerated(0.61) probably_damaging(0.991) TCGA-CV-7568-01 X 34149012 34149012 G A FAM47A Missense_Mutation p.P462S 0.29 tolerated(0.63) probably_damaging(0.986) TCGA-CV-7568-01 X 34149346 34149346 G A FAM47A Silent p.L350L 0.45 TCGA-CV-7568-01 X 34961393 34961393 G C FAM47B Missense_Mutation p.V149L 0.40 tolerated(0.07) benign(0.093) TCGA-CV-7568-01 X 35994002 35994002 G A CXorf22 Silent p.G895G 0.36 TCGA-CV-7568-01 X 37028492 37028492 C T FAM47C Missense_Mutation p.P670L 0.52 deleterious(0.03) probably_damaging(0.974) TCGA-CV-7568-01 X 37028493 37028493 C T FAM47C Silent p.P670P 0.50 TCGA-CV-7568-01 X 37431157 37431157 G A LANCL3 Missense_Mutation p.D12N 0.26 tolerated(0.45) benign(0.089) TCGA-CV-7568-01 X 38033500 38033500 G A SRPX Missense_Mutation p.R88C 0.32 deleterious(0.02) possibly_damaging(0.906) TCGA-CV-7568-01 X 39923689 39923689 C G BCOR Missense_Mutation p.R1134S 0.38 deleterious(0.01) benign(0.119) TCGA-CV-7568-01 X 39933389 39933389 G A BCOR Nonsense_Mutation p.Q404* 0.46 TCGA-CV-7568-01 X 47060900 47060900 C T UBA1 Silent p.C234C 0.20 TCGA-CV-7568-01 X 47092374 47092374 G A USP11 Missense_Mutation p.E21K 0.29 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-CV-7568-01 X 47429395 47429395 C T ARAF Missense_Mutation p.P508L 0.28 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 X 48116746 48116746 G A SSX1 Splice_Site p.X23_splice 0.39 TCGA-CV-7568-01 X 48418193 48418193 C T TBC1D25 Silent p.H299H 0.25 TCGA-CV-7568-01 X 48549500 48549500 G A WAS Missense_Mutation p.E486K 0.34 deleterious_low_confidence(0) unknown(0) TCGA-CV-7568-01 X 48673233 48673233 C T HDAC6 Intron 0.40 TCGA-CV-7568-01 X 48826201 48826201 G A KCND1 Missense_Mutation p.P160S 0.42 tolerated(0.19) benign(0.002) TCGA-CV-7568-01 X 48841725 48841725 C T GRIPAP1 Missense_Mutation p.E378K 0.43 benign(0.012) TCGA-CV-7568-01 X 48974028 48974028 C T GPKOW Missense_Mutation p.E235K 0.36 tolerated(0.12) benign(0.014) TCGA-CV-7568-01 X 49084739 49084739 C T CACNA1F Missense_Mutation p.E330K 0.26 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 X 49127085 49127085 G A PPP1R3F Silent p.E251E 0.37 TCGA-CV-7568-01 X 49142332 49142332 G A PPP1R3F Missense_Mutation p.E394K 0.28 tolerated_low_confidence(0.18) benign(0.437) TCGA-CV-7568-01 X 49597227 49597227 C T PAGE4 Missense_Mutation p.P89L 0.47 tolerated(1) benign(0.001) TCGA-CV-7568-01 X 49959015 49959015 C T AKAP4 Missense_Mutation p.D117N 0.36 deleterious(0) probably_damaging(0.998) TCGA-CV-7568-01 X 50113537 50113537 C T DGKK RNA 0.44 TCGA-CV-7568-01 X 51238908 51238908 T G NUDT11 Missense_Mutation p.Q130P 0.39 deleterious(0.04) probably_damaging(0.922) TCGA-CV-7568-01 X 51638490 51638490 C T MAGED1 Silent p.S185S 0.45 TCGA-CV-7568-01 X 53560984 53560984 G A HUWE1 Missense_Mutation p.P4336S 0.34 unknown(0) TCGA-CV-7568-01 X 54784245 54784245 C T ITIH6 Silent p.T754T 0.47 TCGA-CV-7568-01 X 54818415 54818415 C T ITIH6 Silent p.K104K 0.30 TCGA-CV-7568-01 X 54955273 54955273 G A TRO Missense_Mutation p.E706K 0.44 deleterious(0) unknown(0) TCGA-CV-7568-01 X 55033875 55033875 G A APEX2 3'UTR 0.27 TCGA-CV-7568-01 X 55513685 55513685 C T USP51 Missense_Mutation p.G563E 0.36 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 X 55515083 55515083 G A USP51 Missense_Mutation p.P97L 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-7568-01 X 57935882 57935882 C T ZXDA Missense_Mutation p.D325N 0.43 deleterious(0.03) probably_damaging(0.995) TCGA-CV-7568-01 X 5811026 5811026 G A NLGN4X Silent p.T761T 0.43 TCGA-CV-7568-01 X 63411019 63411019 G A AMER1 Silent p.T716T 0.47 TCGA-CV-7568-01 X 63412636 63412636 G A AMER1 Silent p.R177R 0.43 TCGA-CV-7568-01 X 63565035 63565035 G T MTMR8 Missense_Mutation p.A252E 0.40 deleterious(0) probably_damaging(0.986) TCGA-CV-7568-01 X 64137799 64137799 G A ZC4H2 Intron 0.18 TCGA-CV-7568-01 X 6451863 6451863 C T VCX3A Missense_Mutation p.E162K 0.21 deleterious(0.03) unknown(0) TCGA-CV-7568-01 X 6451923 6451923 C T VCX3A Missense_Mutation p.E142K 0.38 tolerated(0.12) unknown(0) TCGA-CV-7568-01 X 64722486 64722486 A T ZC3H12B Missense_Mutation p.L636F 0.42 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 X 64737987 64737987 C T LAS1L Missense_Mutation p.E603K 0.43 deleterious(0.02) possibly_damaging(0.601) TCGA-CV-7568-01 X 65409595 65409595 A T HEPH Missense_Mutation p.H347L 0.47 deleterious(0) possibly_damaging(0.87) TCGA-CV-7568-01 X 65413359 65413359 T A HEPH Missense_Mutation p.F470L 0.39 deleterious(0) benign(0.41) TCGA-CV-7568-01 X 67283999 67283999 G A OPHN1 Missense_Mutation p.P619S 0.40 tolerated(0.06) benign(0.014) TCGA-CV-7568-01 X 69282986 69282986 G A OTUD6A Missense_Mutation p.M204I 0.27 tolerated(0.2) benign(0.026) TCGA-CV-7568-01 X 69424805 69424805 G A DGAT2L6 Missense_Mutation p.G288E 0.18 deleterious(0) probably_damaging(1) TCGA-CV-7568-01 X 69502097 69502097 G A RAB41 Nonsense_Mutation p.W10* 0.40 TCGA-CV-7568-01 X 69871334 69871334 G A TEX11 Silent p.F498F 0.43 TCGA-CV-7568-01 X 70316716 70316716 C T FOXO4 Missense_Mutation p.A113V 0.42 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 X 70349586 70349586 C T MED12 Missense_Mutation p.P1250S 0.33 benign(0) TCGA-CV-7568-01 X 70349587 70349587 C T MED12 Missense_Mutation p.P1250L 0.33 benign(0) TCGA-CV-7568-01 X 70389887 70389887 C T NLGN3 Silent p.T829T 0.64 TCGA-CV-7568-01 X 70514363 70514363 C T NONO Missense_Mutation p.S212F 0.48 tolerated(0.07) benign(0.027) TCGA-CV-7568-01 X 70787526 70787526 G A OGT Silent p.L922L 0.63 TCGA-CV-7568-01 X 70836173 70836173 G A CXCR3 3'UTR 0.50 TCGA-CV-7568-01 X 71932657 71932657 C T PHKA1 Silent p.R67R 0.40 TCGA-CV-7568-01 X 72095109 72095109 C T DMRTC1 Missense_Mutation p.E41K 0.23 deleterious(0.02) possibly_damaging(0.67) TCGA-CV-7568-01 X 73067622 73067622 C T XIST RNA 0.33 TCGA-CV-7568-01 X 73964195 73964195 G A KIAA2022 Missense_Mutation p.P66L 0.39 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-CV-7568-01 X 75004090 75004090 G A MAGEE2 Missense_Mutation p.A266V 0.48 tolerated(1) probably_damaging(0.996) TCGA-CV-7568-01 X 75648905 75648905 G A MAGEE1 Silent p.E194E 0.16 TCGA-CV-7568-01 X 75648906 75648906 G A MAGEE1 Missense_Mutation p.G195R 0.17 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-CV-7568-01 X 75649270 75649270 C T MAGEE1 Missense_Mutation p.S316L 0.37 tolerated_low_confidence(0.43) benign(0) TCGA-CV-7568-01 X 75650684 75650684 G A MAGEE1 Silent p.L787L 0.49 TCGA-CV-7568-01 X 76874400 76874400 C T ATRX Silent p.K1774K 0.42 TCGA-CV-7568-01 X 76889053 76889053 C T ATRX Splice_Site p.X1652_splice 0.37 TCGA-CV-7568-01 X 76889054 76889054 C T ATRX Silent p.E1652E 0.37 TCGA-CV-7568-01 X 76920140 76920140 C T ATRX Missense_Mutation p.D1313N 0.42 benign(0.006) TCGA-CV-7568-01 X 76938406 76938406 C T ATRX Missense_Mutation p.R781Q 0.50 probably_damaging(0.99) TCGA-CV-7568-01 X 77224941 77224941 C T PGAM4 Silent p.R65R 0.34 TCGA-CV-7568-01 X 77258710 77258710 G A ATP7A Missense_Mutation p.G562R 0.43 tolerated(0.06) benign(0.318) TCGA-CV-7568-01 X 77912704 77912704 G A ZCCHC5 Missense_Mutation p.S405F 0.47 deleterious(0.04) possibly_damaging(0.459) TCGA-CV-7568-01 X 78010777 78010777 C T LPAR4 Silent p.F137F 0.39 TCGA-CV-7568-01 X 78622602 78622602 C T ITM2A Silent p.K37K 0.38 TCGA-CV-7568-01 X 79698393 79698393 G A FAM46D Missense_Mutation p.E119K 0.31 tolerated(0.27) possibly_damaging(0.648) TCGA-CV-7568-01 X 79955510 79955510 C T BRWD3 Silent p.S963S 0.30 TCGA-CV-7568-01 X 79991559 79991559 C T BRWD3 Missense_Mutation p.R281K 0.36 tolerated(0.09) benign(0.259) TCGA-CV-7568-01 X 83128942 83128942 C T CYLC1 Missense_Mutation p.S409F 0.54 deleterious(0) benign(0.341) TCGA-CV-7568-01 X 83129261 83129261 G A CYLC1 Silent p.K515K 0.36 TCGA-CV-7568-01 X 83374962 83374962 C T RPS6KA6 Missense_Mutation p.M240I 0.44 deleterious(0) probably_damaging(0.997) TCGA-CV-7568-01 X 83402052 83402052 G A RPS6KA6 Missense_Mutation p.R119W 0.40 deleterious(0) probably_damaging(0.999) TCGA-CV-7568-01 X 8434044 8434044 G A VCX3B Missense_Mutation p.E121K 0.09 tolerated(0.08) unknown(0) TCGA-CV-7568-01 X 8434164 8434164 G A VCX3B Missense_Mutation p.E161K 0.16 tolerated(0.14) unknown(0) TCGA-CV-7568-01 X 8434194 8434194 G A VCX3B Missense_Mutation p.E171K 0.13 tolerated(0.1) unknown(0) TCGA-CV-7568-01 X 8503691 8503691 C T KAL1 Missense_Mutation p.E595K 0.57 tolerated(0.23) possibly_damaging(0.557) TCGA-CV-7568-01 X 85403797 85403797 G A DACH2 Missense_Mutation p.G58D 0.51 tolerated_low_confidence(0.06) probably_damaging(0.92) TCGA-CV-7568-01 X 85906077 85906077 C T DACH2 Nonsense_Mutation p.Q227* 0.47 TCGA-CV-7568-01 X 86773015 86773015 G A KLHL4 Missense_Mutation p.G40E 0.25 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CV-7568-01 X 86887299 86887299 G A KLHL4 Missense_Mutation p.A472T 0.35 deleterious(0.01) possibly_damaging(0.896) TCGA-CV-7568-01 X 90691155 90691155 G A PABPC5 Silent p.R193R 0.46 TCGA-CV-7568-01 X 90691537 90691537 G A PABPC5 Missense_Mutation p.E321K 0.31 deleterious(0.01) possibly_damaging(0.842) TCGA-CV-7568-01 X 91131890 91131890 G A PCDH11X Missense_Mutation p.M217I 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-CV-7568-01 X 91132245 91132245 C T PCDH11X Missense_Mutation p.P336S 0.42 tolerated(0.09) probably_damaging(1) TCGA-CV-7568-01 X 91873700 91873700 C T PCDH11X Missense_Mutation p.R1269C 0.39 deleterious_low_confidence(0.01) benign(0.002) TCGA-CV-7568-01 X 96136647 96136647 G A DIAPH2 Missense_Mutation p.G173S 0.39 deleterious(0) unknown(0) TCGA-CV-7568-01 X 9665463 9665463 C T TBL1X Missense_Mutation p.H370Y 0.46 deleterious(0.01) possibly_damaging(0.529) TCGA-CV-7568-01 X 9900522 9900522 C T SHROOM2 Missense_Mutation p.P1067S 0.44 tolerated(0.08) probably_damaging(0.959) TCGA-CV-7568-01 X 99956598 99956598 C T SYTL4 Missense_Mutation p.R61Q 0.39 deleterious(0) possibly_damaging(0.678) TCGA-CV-A45O-01 10 116067594 116067594 C A AFAP1L2 Nonsense_Mutation p.E348* 0.10 TCGA-CV-A45O-01 10 127408404 127408404 G C EDRF1 Missense_Mutation p.E10Q 0.18 deleterious_low_confidence(0.03) unknown(0) TCGA-CV-A45O-01 10 128974117 128974117 C T FAM196A Missense_Mutation p.M181I 0.11 tolerated(0.76) benign(0.073) TCGA-CV-A45O-01 10 134898352 134898352 G C GPR123 5'Flank 0.10 TCGA-CV-A45O-01 10 17199505 17199505 C T TRDMT1 Silent p.L274L 0.08 TCGA-CV-A45O-01 10 56077040 56077040 C T PCDH15 Silent p.L289L 0.17 TCGA-CV-A45O-01 10 81317043 81317043 C G SFTPA2 Missense_Mutation p.Q223H 0.10 deleterious(0.01) possibly_damaging(0.56) TCGA-CV-A45O-01 10 91470852 91470852 G C KIF20B Missense_Mutation p.E209Q 0.15 tolerated(0.06) probably_damaging(0.995) TCGA-CV-A45O-01 11 17544352 17544352 T C USH1C Missense_Mutation p.E333G 0.14 deleterious(0.02) probably_damaging(0.968) TCGA-CV-A45O-01 11 4661698 4661698 C T OR51D1 Silent p.F226F 0.15 TCGA-CV-A45O-01 11 46637290 46637290 C T HARBI1 Silent p.V166V 0.17 TCGA-CV-A45O-01 11 55587580 55587580 G T OR5D18 Nonsense_Mutation p.E159* 0.14 TCGA-CV-A45O-01 11 58919996 58919996 G A FAM111A Silent p.E285E 0.16 TCGA-CV-A45O-01 11 72296611 72296611 G C PDE2A Silent p.L403L 0.19 TCGA-CV-A45O-01 11 84027938 84027938 G A DLG2 Intron 0.21 TCGA-CV-A45O-01 11 870480 870480 C T CHID1 Missense_Mutation p.D352N 0.27 tolerated(0.21) benign(0.001) TCGA-CV-A45O-01 11 870490 870490 C T CHID1 Silent p.Q348Q 0.27 TCGA-CV-A45O-01 12 112650328 112650328 G A HECTD4 Missense_Mutation p.S2385F 0.12 benign(0.367) TCGA-CV-A45O-01 12 112650351 112650351 G C HECTD4 Silent p.L2377L 0.13 TCGA-CV-A45O-01 12 123097728 123097728 G A KNTC1 Missense_Mutation p.D1898N 0.14 deleterious(0.02) benign(0.357) TCGA-CV-A45O-01 12 132283601 132283601 G A SFSWAP Missense_Mutation p.E965K 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-A45O-01 12 14822685 14822685 G A GUCY2C Missense_Mutation p.S418F 0.10 tolerated(0.08) benign(0.058) TCGA-CV-A45O-01 12 1702577 1702577 G A FBXL14 Missense_Mutation p.S219F 0.19 deleterious(0) possibly_damaging(0.615) TCGA-CV-A45O-01 12 1949979 1949979 G A CACNA2D4 Missense_Mutation p.A826V 0.16 tolerated(0.31) benign(0.03) TCGA-CV-A45O-01 12 53400186 53400186 C T EIF4B 5'UTR 0.16 TCGA-CV-A45O-01 12 62943490 62943490 T C MON2 Silent p.V932V 0.24 TCGA-CV-A45O-01 12 6646891 6646891 G A GAPDH Missense_Mutation p.E223K 0.13 tolerated_low_confidence(0.05) benign(0.026) TCGA-CV-A45O-01 12 68646582 68646582 C T IL22 Missense_Mutation p.V72I 0.10 tolerated(0.44) benign(0.044) TCGA-CV-A45O-01 13 26535778 26535778 G A ATP8A2 Silent p.L1083L 0.10 TCGA-CV-A45O-01 13 39540883 39540883 C G STOML3 3'UTR 0.25 TCGA-CV-A45O-01 13 86369739 86369739 G C SLITRK6 Missense_Mutation p.S302C 0.13 tolerated(0.05) benign(0.285) TCGA-CV-A45O-01 14 21822620 21822620 C G SUPT16H Missense_Mutation p.E914Q 0.14 deleterious(0.01) benign(0.411) TCGA-CV-A45O-01 14 21969183 21969183 G A METTL3 Missense_Mutation p.H330Y 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A45O-01 14 52781579 52781579 G C PTGER2 Missense_Mutation p.E105Q 0.14 tolerated(0.45) benign(0.016) TCGA-CV-A45O-01 14 71197410 71197410 C T MAP3K9 Missense_Mutation p.R1015Q 0.05 deleterious(0) probably_damaging(0.996) TCGA-CV-A45O-01 14 78202301 78202301 G A SNW1 Silent p.V229V 0.21 TCGA-CV-A45O-01 15 101112104 101112104 C G LINS Silent p.L463L 0.12 TCGA-CV-A45O-01 15 102358936 102358936 C T OR4F15 Missense_Mutation p.R183W 0.14 tolerated_low_confidence(0.16) probably_damaging(0.913) TCGA-CV-A45O-01 15 28447508 28447508 C T HERC2 Missense_Mutation p.A2489T 0.07 benign(0.02) TCGA-CV-A45O-01 15 49867302 49867302 C T FAM227B Missense_Mutation p.R184K 0.25 tolerated(1) benign(0) TCGA-CV-A45O-01 15 52005560 52005561 - A SCG3 Frame_Shift_Ins p.N415Kfs*3 0.09 TCGA-CV-A45O-01 15 55965788 55965788 G A PRTG Missense_Mutation p.R545W 0.10 deleterious(0) probably_damaging(0.992) TCGA-CV-A45O-01 15 56436623 56436623 G C RFX7 Missense_Mutation p.S85C 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-A45O-01 15 63904479 63904479 G A HERC1 Nonsense_Mutation p.Q4791* 0.17 TCGA-CV-A45O-01 15 65703569 65703569 C T IGDCC4 Silent p.V70V 0.09 TCGA-CV-A45O-01 15 85400425 85400425 G A ALPK3 Missense_Mutation p.R1021Q 0.17 tolerated_low_confidence(1) benign(0) TCGA-CV-A45O-01 15 90815022 90815022 T G NGRN 3'UTR 0.11 TCGA-CV-A45O-01 15 90815023 90815023 C G NGRN 3'UTR 0.12 TCGA-CV-A45O-01 15 91436007 91436007 G A FES Missense_Mutation p.R593Q 0.14 deleterious(0.01) possibly_damaging(0.739) TCGA-CV-A45O-01 16 28508470 28508470 T C APOBR Missense_Mutation p.L703P 0.29 tolerated(0.14) possibly_damaging(0.883) TCGA-CV-A45O-01 16 55862697 55862697 G A CES1 Missense_Mutation p.A81V 0.05 deleterious(0.01) benign(0.193) TCGA-CV-A45O-01 16 65032504 65032504 C T CDH11 Missense_Mutation p.E162K 0.10 deleterious(0.02) benign(0.011) TCGA-CV-A45O-01 16 68269632 68269632 C T ESRP2 Missense_Mutation p.E78K 0.12 deleterious(0.01) benign(0.079) TCGA-CV-A45O-01 16 69353412 69353412 G T VPS4A Missense_Mutation p.D196Y 0.15 deleterious(0) probably_damaging(0.946) TCGA-CV-A45O-01 16 69354105 69354105 G A VPS4A Missense_Mutation p.E228K 0.11 deleterious(0) probably_damaging(0.989) TCGA-CV-A45O-01 17 11672474 11672474 G T DNAH9 Silent p.V2460V 0.18 TCGA-CV-A45O-01 17 33331362 33331362 G A LIG3 Missense_Mutation p.R956K 0.07 tolerated(0.3) benign(0.003) TCGA-CV-A45O-01 17 33331619 33331619 G A LIG3 3'UTR 0.27 TCGA-CV-A45O-01 17 40725341 40725341 C T PSMC3IP Silent p.K175K 0.15 TCGA-CV-A45O-01 17 48182772 48182772 G A PDK2 Missense_Mutation p.D100N 0.11 tolerated(0.46) benign(0.267) TCGA-CV-A45O-01 17 7213022 7213022 C T EIF5A Missense_Mutation p.S53L 0.07 deleterious(0) probably_damaging(0.975) TCGA-CV-A45O-01 17 72588946 72588946 C G C17orf77 3'UTR 0.10 TCGA-CV-A45O-01 18 21747360 21747360 C T OSBPL1A Missense_Mutation p.S823N 0.12 tolerated(0.07) benign(0.06) TCGA-CV-A45O-01 18 40854100 40854100 C A SYT4 Missense_Mutation p.K98N 0.12 tolerated(0.15) benign(0.005) TCGA-CV-A45O-01 18 5891773 5891773 C T TMEM200C Missense_Mutation p.R97Q 0.14 tolerated(0.07) possibly_damaging(0.857) TCGA-CV-A45O-01 18 67534613 67534613 C G CD226 Missense_Mutation p.E289Q 0.07 tolerated(0.11) benign(0.051) TCGA-CV-A45O-01 18 8069693 8069693 G A PTPRM Missense_Mutation p.R381Q 0.17 tolerated(0.21) benign(0.005) TCGA-CV-A45O-01 19 12812644 12812644 G C TNPO2 Missense_Mutation p.I811M 0.10 deleterious(0) possibly_damaging(0.82) TCGA-CV-A45O-01 19 15839605 15839605 T C OR10H2 Missense_Mutation p.V251A 0.14 deleterious(0.01) possibly_damaging(0.816) TCGA-CV-A45O-01 19 42914582 42914582 C A LIPE Silent p.L432L 0.06 TCGA-CV-A45O-01 19 48953936 48953936 C T GRWD1 Silent p.T232T 0.13 TCGA-CV-A45O-01 19 50306633 50306633 C A AP2A1 Missense_Mutation p.Q804K 0.16 tolerated(1) benign(0.012) TCGA-CV-A45O-01 19 50657981 50657981 C T IZUMO2 Missense_Mutation p.D167N 0.15 tolerated(0.16) possibly_damaging(0.741) TCGA-CV-A45O-01 19 54515361 54515361 G A CACNG6 Missense_Mutation p.G234E 0.13 deleterious(0.01) probably_damaging(0.958) TCGA-CV-A45O-01 1 114968304 114968304 G A TRIM33 Missense_Mutation p.P488S 0.13 deleterious(0.01) benign(0.201) TCGA-CV-A45O-01 1 1322615 1322615 C T CCNL2 Missense_Mutation p.R520K 0.10 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CV-A45O-01 1 152382990 152382990 C G CRNN Missense_Mutation p.E190Q 0.11 tolerated(0.2) benign(0.09) TCGA-CV-A45O-01 1 153947166 153947166 C T JTB Missense_Mutation p.E144K 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-CV-A45O-01 1 156721248 156721248 C T HDGF Intron 0.20 TCGA-CV-A45O-01 1 1572327 1572327 G A CDK11B Silent p.L581L 0.12 TCGA-CV-A45O-01 1 16254889 16254889 G A SPEN Silent p.E718E 0.19 TCGA-CV-A45O-01 1 183079669 183079669 G C LAMC1 Missense_Mutation p.D301H 0.10 deleterious(0.03) possibly_damaging(0.459) TCGA-CV-A45O-01 1 192985378 192985378 C T UCHL5 3'UTR 0.14 TCGA-CV-A45O-01 1 205585646 205585646 C G ELK4 3'UTR 0.17 TCGA-CV-A45O-01 1 215844402 215844402 C G USH2A Missense_Mutation p.R4682T 0.14 benign(0) TCGA-CV-A45O-01 1 240370687 240370687 C A FMN2 Missense_Mutation p.P859T 0.09 unknown(0) TCGA-CV-A45O-01 1 27621045 27621045 G A WDTC1 Silent p.L266L 0.17 TCGA-CV-A45O-01 1 36383221 36383221 C T AGO1 Missense_Mutation p.R686C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-A45O-01 1 44075077 44075077 C G PTPRF Missense_Mutation p.S1294C 0.32 deleterious(0.01) benign(0.345) TCGA-CV-A45O-01 1 51050456 51050456 C T FAF1 Missense_Mutation p.D290N 0.15 tolerated(0.21) possibly_damaging(0.726) TCGA-CV-A45O-01 1 65851492 65851492 T C DNAJC6 Missense_Mutation p.F300L 0.08 tolerated(1) benign(0.01) TCGA-CV-A45O-01 1 92568216 92568216 C T BTBD8 Silent p.F178F 0.19 TCGA-CV-A45O-01 1 9640095 9640095 G A SLC25A33 Missense_Mutation p.G189E 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A45O-01 20 35444710 35444710 C T SOGA1 Missense_Mutation p.E379K 0.15 deleterious(0) probably_damaging(0.995) TCGA-CV-A45O-01 21 34640812 34640812 C T AP000295.9 Nonsense_Mutation p.Q183* 0.15 TCGA-CV-A45O-01 21 43803206 43803206 G A TMPRSS3 Missense_Mutation p.H240Y 0.16 tolerated(0.07) possibly_damaging(0.874) TCGA-CV-A45O-01 22 50945072 50945072 G C LMF2 Missense_Mutation p.F124L 0.15 deleterious(0) probably_damaging(1) TCGA-CV-A45O-01 2 128944257 128944257 G A UGGT1 Missense_Mutation p.D1454N 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A45O-01 2 158397654 158397654 G C ACVR1C Missense_Mutation p.I391M 0.14 tolerated(0.22) benign(0.28) TCGA-CV-A45O-01 2 191109624 191109624 C T HIBCH Missense_Mutation p.E294K 0.20 tolerated(1) benign(0.001) TCGA-CV-A45O-01 2 202136252 202136252 C T CASP8 Nonsense_Mutation p.Q166* 0.37 TCGA-CV-A45O-01 2 233246271 233246271 C T ALPP Silent p.D458D 0.10 TCGA-CV-A45O-01 2 234678287 234678287 G A UGT1A10 Intron 0.19 TCGA-CV-A45O-01 2 26717839 26717839 C G OTOF Missense_Mutation p.E290Q 0.10 deleterious(0.01) probably_damaging(1) TCGA-CV-A45O-01 2 29451853 29451853 A G ALK Silent p.H904H 0.12 TCGA-CV-A45O-01 2 30977169 30977169 C G CAPN13 Missense_Mutation p.D310H 0.38 deleterious(0) probably_damaging(0.988) TCGA-CV-A45O-01 2 55900074 55900074 G A PNPT1 Nonsense_Mutation p.Q274* 0.21 TCGA-CV-A45O-01 2 72359628 72359628 C T CYP26B1 Missense_Mutation p.E423K 0.15 deleterious(0.05) probably_damaging(0.984) TCGA-CV-A45O-01 3 121413963 121413963 C T GOLGB1 Missense_Mutation p.E1803K 0.14 benign(0.001) TCGA-CV-A45O-01 3 123419831 123419831 G A MYLK Silent p.C828C 0.15 TCGA-CV-A45O-01 3 155203387 155203387 C T PLCH1 Missense_Mutation p.R919Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-A45O-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-CV-A45O-01 3 180327971 180327971 G C TTC14 Missense_Mutation p.E652Q 0.14 deleterious_low_confidence(0.05) unknown(0) TCGA-CV-A45O-01 3 180328270 180328270 G A TTC14 Silent p.L751L 0.14 TCGA-CV-A45O-01 3 30732963 30732963 G A TGFBR2 Missense_Mutation p.E551K 0.12 deleterious(0) probably_damaging(1) TCGA-CV-A45O-01 3 48668423 48668423 G A SLC26A6 Intron 0.13 TCGA-CV-A45O-01 3 64644236 64644236 C G ADAMTS9 Missense_Mutation p.R304T 0.09 deleterious(0) benign(0.134) TCGA-CV-A45O-01 3 64644310 64644310 C G ADAMTS9 Missense_Mutation p.K279N 0.15 tolerated(0.19) benign(0.004) TCGA-CV-A45O-01 4 102019535 102019535 C T PPP3CA Missense_Mutation p.D211N 0.18 deleterious(0.01) probably_damaging(0.92) TCGA-CV-A45O-01 4 10447351 10447351 C T ZNF518B Missense_Mutation p.R201K 0.09 deleterious(0) probably_damaging(0.978) TCGA-CV-A45O-01 4 144106718 144106718 G A USP38 Missense_Mutation p.E39K 0.13 tolerated(1) benign(0) TCGA-CV-A45O-01 4 1825465 1825465 G A LETM1 Missense_Mutation p.S413L 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-A45O-01 4 187455081 187455081 A G MTNR1A Missense_Mutation p.I272T 0.09 deleterious(0) possibly_damaging(0.493) TCGA-CV-A45O-01 4 187530425 187530425 G C FAT1 Nonsense_Mutation p.S3373* 0.35 TCGA-CV-A45O-01 4 187628929 187628929 C A FAT1 Nonsense_Mutation p.E685* 0.11 TCGA-CV-A45O-01 4 48037921 48037921 C T NIPAL1 Missense_Mutation p.S322F 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-A45O-01 4 6303712 6303712 G C WFS1 Missense_Mutation p.W730C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-A45O-01 4 71660571 71660571 G A RUFY3 Missense_Mutation p.S506N 0.11 tolerated(0.14) benign(0.002) TCGA-CV-A45O-01 5 10411555 10411555 G A MARCH6 Missense_Mutation p.G601E 0.11 tolerated(0.06) benign(0.272) TCGA-CV-A45O-01 5 127507429 127507429 C T SLC12A2 Nonsense_Mutation p.Q932* 0.11 TCGA-CV-A45O-01 5 139908925 139908925 C G ANKHD1 Missense_Mutation p.R2132G 0.16 benign(0.356) TCGA-CV-A45O-01 5 139909058 139909058 C T ANKHD1 Missense_Mutation p.A2176V 0.10 benign(0.214) TCGA-CV-A45O-01 5 140188818 140188818 G A PCDHA4 Silent p.A682A 0.20 TCGA-CV-A45O-01 5 140229089 140229089 C T PCDHA9 Missense_Mutation p.L337F 0.12 deleterious_low_confidence(0.03) benign(0.078) TCGA-CV-A45O-01 5 140256961 140256961 G A PCDHA12 Missense_Mutation p.R635H 0.11 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-CV-A45O-01 5 150921911 150921911 G A FAT2 Missense_Mutation p.A2926V 0.10 benign(0.006) TCGA-CV-A45O-01 5 15936847 15936847 G A FBXL7 Missense_Mutation p.R343Q 0.13 tolerated(0.16) probably_damaging(0.988) TCGA-CV-A45O-01 5 24537718 24537718 A G CDH10 Silent p.G99G 0.21 TCGA-CV-A45O-01 5 32724837 32724837 G A NPR3 Missense_Mutation p.R268Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-A45O-01 5 39202662 39202662 C T FYB Missense_Mutation p.G144E 0.12 tolerated(0.14) possibly_damaging(0.907) TCGA-CV-A45O-01 5 40692464 40692464 C T PTGER4 Missense_Mutation p.S484L 0.11 deleterious_low_confidence(0.01) benign(0.118) TCGA-CV-A45O-01 5 43529915 43529915 C T PAIP1 Missense_Mutation p.G440E 0.08 deleterious(0.05) probably_damaging(0.976) TCGA-CV-A45O-01 5 63510034 63510034 G T RNF180 Missense_Mutation p.R294I 0.10 deleterious(0) possibly_damaging(0.766) TCGA-CV-A45O-01 5 82357701 82357701 C T TMEM167A Missense_Mutation p.R48K 0.19 tolerated(0.06) benign(0.437) TCGA-CV-A45O-01 6 101098482 101098482 G A ASCC3 Nonsense_Mutation p.Q1062* 0.21 TCGA-CV-A45O-01 6 134350659 134350659 C T SLC2A12 Missense_Mutation p.D102N 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A45O-01 6 159420575 159420575 G A RSPH3 Missense_Mutation p.S145L 0.14 tolerated(0.84) benign(0.002) TCGA-CV-A45O-01 6 161527723 161527723 G C MAP3K4 Missense_Mutation p.R1345T 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-A45O-01 6 27879379 27879379 G A OR2B2 Missense_Mutation p.T240I 0.12 deleterious(0.03) possibly_damaging(0.651) TCGA-CV-A45O-01 6 27879548 27879548 G C OR2B2 Missense_Mutation p.L184V 0.15 deleterious(0.01) possibly_damaging(0.808) TCGA-CV-A45O-01 6 2895698 2895698 C A SERPINB9 Missense_Mutation p.K117N 0.21 deleterious(0.01) benign(0.296) TCGA-CV-A45O-01 6 32813460 32813460 G A TAP1 Silent p.L775L 0.19 TCGA-CV-A45O-01 6 42583792 42583792 G C UBR2 Missense_Mutation p.L382F 0.06 tolerated(0.36) benign(0.003) TCGA-CV-A45O-01 6 7580249 7580249 C T DSP Nonsense_Mutation p.Q1276* 0.12 TCGA-CV-A45O-01 6 88854078 88854078 C T CNR1 Missense_Mutation p.V306I 0.14 tolerated(0.06) probably_damaging(0.932) TCGA-CV-A45O-01 7 100086246 100086246 G A NYAP1 Missense_Mutation p.R301H 0.10 tolerated(0.38) benign(0.005) TCGA-CV-A45O-01 7 138764924 138764924 G A ZC3HAV1 Nonsense_Mutation p.Q255* 0.06 TCGA-CV-A45O-01 7 158824727 158824727 G A VIPR2 Missense_Mutation p.P335S 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A45O-01 7 44104787 44104787 G C PGAM2 Missense_Mutation p.I114M 0.16 deleterious(0.01) possibly_damaging(0.632) TCGA-CV-A45O-01 7 65557846 65557846 G A ASL Missense_Mutation p.V448I 0.07 tolerated(0.17) benign(0.018) TCGA-CV-A45O-01 7 87072993 87072993 G A ABCB4 Nonsense_Mutation p.R406* 0.14 TCGA-CV-A45O-01 7 93113282 93113282 C A CALCR Intron 0.17 TCGA-CV-A45O-01 8 101629873 101629873 G C SNX31 Nonsense_Mutation p.S136* 0.12 TCGA-CV-A45O-01 8 102381306 102381306 G A NACAP1 RNA 0.14 TCGA-CV-A45O-01 8 121528317 121528317 C T MTBP Missense_Mutation p.S711L 0.05 tolerated(1) benign(0) TCGA-CV-A45O-01 8 128750924 128750924 C G MYC Missense_Mutation p.S154W 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A45O-01 8 2088645 2088645 G A MYOM2 Splice_Site p.X1267_splice 0.21 TCGA-CV-A45O-01 8 22051684 22051684 G A BMP1 Missense_Mutation p.E432K 0.11 deleterious(0.02) benign(0.133) TCGA-CV-A45O-01 8 28876293 28876293 G A HMBOX1 Missense_Mutation p.M238I 0.06 tolerated(0.09) possibly_damaging(0.468) TCGA-CV-A45O-01 8 39645740 39645740 G C ADAM2 Missense_Mutation p.L225V 0.12 deleterious(0) possibly_damaging(0.86) TCGA-CV-A45O-01 8 39695695 39695695 C T ADAM2 Missense_Mutation p.V4I 0.13 tolerated(0.3) benign(0.001) TCGA-CV-A45O-01 8 53062469 53062469 G A ST18 Silent p.D625D 0.12 TCGA-CV-A45O-01 8 90976656 90976656 G C NBN Missense_Mutation p.Q326E 0.10 deleterious(0.02) benign(0.097) TCGA-CV-A45O-01 9 104499919 104499919 C T GRIN3A Missense_Mutation p.E115K 0.16 tolerated_low_confidence(0.65) benign(0.03) TCGA-CV-A45O-01 9 107331475 107331475 G C OR13C8 Silent p.S9S 0.14 TCGA-CV-A45O-01 9 131021583 131021583 G A GOLGA2 Nonsense_Mutation p.Q627* 0.11 TCGA-CV-A45O-01 9 14824903 14824903 C T FREM1 Missense_Mutation p.E657K 0.16 deleterious(0.03) benign(0.178) TCGA-CV-A45O-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.13 TCGA-CV-A45O-01 9 2643851 2643851 G C VLDLR Missense_Mutation p.G320R 0.14 tolerated(0.06) benign(0.2) TCGA-CV-A45O-01 9 32472994 32472994 C T DDX58 Missense_Mutation p.G665S 0.16 tolerated(0.08) benign(0.031) TCGA-CV-A45O-01 9 36234070 36234070 G A GNE Missense_Mutation p.R308C 0.15 tolerated(0.08) possibly_damaging(0.899) TCGA-CV-A45O-01 X 139866462 139866462 C T CDR1 Missense_Mutation p.D24N 0.19 tolerated(0.06) possibly_damaging(0.728) TCGA-CV-A45O-01 X 14627288 14627288 G A GLRA2 Missense_Mutation p.M297I 0.24 tolerated(0.13) possibly_damaging(0.89) TCGA-CV-A45O-01 X 53277968 53277968 G A IQSEC2 Silent p.L798L 0.39 TCGA-CV-A45O-01 X 53277994 53277994 G C IQSEC2 Missense_Mutation p.H790D 0.41 deleterious(0) possibly_damaging(0.583) TCGA-CV-A45O-01 X 96171501 96171501 C G DIAPH2 Missense_Mutation p.P266R 0.33 deleterious(0.01) unknown(0) TCGA-CV-A45P-01 10 101639891 101639891 G A DNMBP Missense_Mutation p.P1409S 0.09 tolerated(1) benign(0) TCGA-CV-A45P-01 10 101639938 101639938 G C DNMBP Missense_Mutation p.S1393C 0.09 deleterious(0) possibly_damaging(0.687) TCGA-CV-A45P-01 10 105107010 105107010 C G PCGF6 Missense_Mutation p.E220Q 0.27 tolerated(0.08) possibly_damaging(0.727) TCGA-CV-A45P-01 10 21823581 21823581 C G MLLT10 Missense_Mutation p.S3C 0.12 tolerated_low_confidence(0.11) benign(0.351) TCGA-CV-A45P-01 10 29776152 29776152 G C SVIL Silent p.L1475L 0.12 TCGA-CV-A45P-01 10 37430689 37430689 G A ANKRD30A Silent p.A232A 0.18 TCGA-CV-A45P-01 10 38120759 38120759 A T ZNF248 Silent p.I508I 0.14 TCGA-CV-A45P-01 10 6273225 6273225 G C PFKFB3 Intron 0.12 TCGA-CV-A45P-01 10 64564963 64564963 C T ADO Silent p.P48P 0.26 TCGA-CV-A45P-01 11 118769637 118769637 G T BCL9L Silent p.I1329I 0.10 TCGA-CV-A45P-01 11 119004898 119004898 T C HINFP Missense_Mutation p.L415P 0.15 tolerated(0.32) benign(0) TCGA-CV-A45P-01 11 124619673 124619673 G A VSIG2 Missense_Mutation p.P173S 0.21 deleterious(0.03) probably_damaging(1) TCGA-CV-A45P-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.13 deleterious(0.02) probably_damaging(0.989) TCGA-CV-A45P-01 11 60610238 60610238 G A CCDC86 Missense_Mutation p.R214Q 0.23 tolerated(0.08) benign(0.441) TCGA-CV-A45P-01 11 60658625 60658625 G A PRPF19 3'UTR 0.09 TCGA-CV-A45P-01 11 60658636 60658636 G A PRPF19 3'UTR 0.14 TCGA-CV-A45P-01 11 62567851 62567851 G A NXF1 Silent p.I338I 0.15 TCGA-CV-A45P-01 11 64054480 64054480 G A GPR137 Missense_Mutation p.R192Q 0.18 deleterious(0.02) benign(0.105) TCGA-CV-A45P-01 12 10241822 10241822 C T CLEC1A Splice_Site p.X39_splice 0.17 TCGA-CV-A45P-01 12 102569390 102569390 C T PARPBP Silent p.I317I 0.13 TCGA-CV-A45P-01 12 106977034 106977034 C T RP11-144F15.1 Intron 0.16 TCGA-CV-A45P-01 12 119978475 119978475 G C CCDC60 Missense_Mutation p.Q536H 0.16 deleterious(0) probably_damaging(0.983) TCGA-CV-A45P-01 12 121437302 121437302 C G HNF1A Missense_Mutation p.T547S 0.12 tolerated_low_confidence(0.64) benign(0.004) TCGA-CV-A45P-01 12 39124119 39124119 A T CPNE8 Missense_Mutation p.L255H 0.15 deleterious(0) possibly_damaging(0.907) TCGA-CV-A45P-01 12 40702421 40702421 T A LRRK2 Missense_Mutation p.I1371K 0.26 deleterious(0) probably_damaging(1) TCGA-CV-A45P-01 12 53563911 53563911 C T CSAD Splice_Site p.X243_splice 0.17 TCGA-CV-A45P-01 12 54070067 54070067 G T ATP5G2 5'UTR 0.15 TCGA-CV-A45P-01 12 94761952 94761952 G C CCDC41 Silent p.L358L 0.18 TCGA-CV-A45P-01 13 111156284 111156284 G A COL4A2 Missense_Mutation p.R1410Q 0.16 possibly_damaging(0.553) TCGA-CV-A45P-01 13 32731436 32731436 C T FRY Nonsense_Mutation p.R560* 0.18 TCGA-CV-A45P-01 13 51953685 51953685 C T INTS6 Missense_Mutation p.M433I 0.10 tolerated(0.13) benign(0.001) TCGA-CV-A45P-01 13 75898380 75898380 C T TBC1D4 Missense_Mutation p.E731K 0.24 tolerated(0.87) benign(0.066) TCGA-CV-A45P-01 14 21792998 21792998 G C RPGRIP1 Missense_Mutation p.E662Q 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A45P-01 14 21860805 21860805 G C CHD8 Missense_Mutation p.S2211C 0.11 tolerated(0.08) possibly_damaging(0.7) TCGA-CV-A45P-01 14 45711432 45711432 C G MIS18BP1 Missense_Mutation p.Q316H 0.18 deleterious(0.02) possibly_damaging(0.459) TCGA-CV-A45P-01 14 47530616 47530616 C T MDGA2 Missense_Mutation p.R454Q 0.12 deleterious(0.02) probably_damaging(0.988) TCGA-CV-A45P-01 14 55878349 55878349 G T ATG14 Missense_Mutation p.F64L 0.21 tolerated(0.12) benign(0.025) TCGA-CV-A45P-01 14 64434488 64434488 C T SYNE2 Missense_Mutation p.S351L 0.21 benign(0.004) TCGA-CV-A45P-01 14 74036233 74036233 C T ACOT2 Missense_Mutation p.R97C 0.27 deleterious(0.02) possibly_damaging(0.606) TCGA-CV-A45P-01 14 74874295 74874295 G C SYNDIG1L Silent p.L220L 0.13 TCGA-CV-A45P-01 14 76549008 76549008 C G IFT43 Silent p.L144L 0.15 TCGA-CV-A45P-01 14 92265368 92265368 G C TC2N Nonsense_Mutation p.S201* 0.28 TCGA-CV-A45P-01 14 95057231 95057231 G A SERPINA5 Missense_Mutation p.E346K 0.08 tolerated(0.4) benign(0.428) TCGA-CV-A45P-01 14 96178588 96178588 G T TCL1A Missense_Mutation p.S89Y 0.11 deleterious(0) probably_damaging(0.99) TCGA-CV-A45P-01 15 28387409 28387409 G T HERC2 Missense_Mutation p.P3892Q 0.13 benign(0.136) TCGA-CV-A45P-01 15 40630808 40630808 C A C15orf52 Missense_Mutation p.E191D 0.23 tolerated(0.41) benign(0.004) TCGA-CV-A45P-01 15 44581156 44581156 C G CASC4 5'UTR 0.22 TCGA-CV-A45P-01 15 51763484 51763484 C G DMXL2 Missense_Mutation p.R2443T 0.22 tolerated(0.18) probably_damaging(0.999) TCGA-CV-A45P-01 15 55790509 55790509 C T DYX1C1 Missense_Mutation p.D7N 0.08 deleterious(0.05) benign(0.117) TCGA-CV-A45P-01 15 85410593 85410593 G A ALPK3 Missense_Mutation p.R1792Q 0.15 deleterious(0.01) probably_damaging(0.909) TCGA-CV-A45P-01 16 12162924 12162924 C T SNX29 Silent p.L418L 0.16 TCGA-CV-A45P-01 16 30100023 30100023 C T TBX6 Silent p.Q253Q 0.16 TCGA-CV-A45P-01 16 46762977 46762977 G A MYLK3 Silent p.D577D 0.17 TCGA-CV-A45P-01 16 48311250 48311250 C T LONP2 Missense_Mutation p.R415C 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A45P-01 16 55517036 55517036 G A MMP2 Silent p.Q123Q 0.15 TCGA-CV-A45P-01 16 55517971 55517971 G A MMP2 Missense_Mutation p.D142N 0.12 tolerated(0.06) probably_damaging(0.952) TCGA-CV-A45P-01 16 67202771 67202771 G C HSF4 Missense_Mutation p.E374Q 0.13 deleterious(0.02) benign(0.017) TCGA-CV-A45P-01 16 67203770 67203770 G A HSF4 3'UTR 0.32 TCGA-CV-A45P-01 16 85691140 85691140 G C GSE1 Missense_Mutation p.E524Q 0.19 tolerated(0.11) possibly_damaging(0.562) TCGA-CV-A45P-01 16 85813429 85813429 G A EMC8 Missense_Mutation p.S173L 0.11 deleterious(0.02) benign(0.302) TCGA-CV-A45P-01 17 25752587 25752587 G A TBC1D3P5 RNA 0.21 TCGA-CV-A45P-01 17 36070626 36070626 G A HNF1B Missense_Mutation p.S364L 0.21 deleterious(0.02) benign(0.297) TCGA-CV-A45P-01 17 47785214 47785214 G C SLC35B1 5'UTR 0.21 TCGA-CV-A45P-01 17 48559617 48559617 G T RSAD1 Nonsense_Mutation p.E214* 0.14 TCGA-CV-A45P-01 17 53084944 53084944 G C STXBP4 Missense_Mutation p.E218Q 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-CV-A45P-01 17 57232366 57232366 G A SKA2 Intron 0.16 TCGA-CV-A45P-01 17 62121349 62121349 C T ERN1 Silent p.%3D 0.18 TCGA-CV-A45P-01 17 7111543 7111543 C G DLG4 Missense_Mutation p.D59H 0.13 deleterious(0.01) benign(0.018) TCGA-CV-A45P-01 17 7365712 7365712 G A ZBTB4 Silent p.S863S 0.13 TCGA-CV-A45P-01 17 7577090 7577090 C T TP53 Missense_Mutation p.R283H 0.10 deleterious(0.01) probably_damaging(0.957) TCGA-CV-A45P-01 17 7699957 7699957 G C DNAH2 Missense_Mutation p.R2617P 0.11 probably_damaging(1) TCGA-CV-A45P-01 17 79827209 79827209 G A ARHGDIA Silent p.F116F 0.21 TCGA-CV-A45P-01 17 8413267 8413267 C T MYH10 Missense_Mutation p.D985N 0.10 probably_damaging(0.998) TCGA-CV-A45P-01 18 13056587 13056587 C T CEP192 Missense_Mutation p.S1333F 0.16 deleterious(0.04) benign(0.178) TCGA-CV-A45P-01 18 43460094 43460094 G A EPG5 Silent p.S1871S 0.23 TCGA-CV-A45P-01 18 9524669 9524669 G A RALBP1 Missense_Mutation p.M377I 0.14 tolerated(0.5) benign(0) TCGA-CV-A45P-01 19 1428915 1428915 G A DAZAP1 Silent p.G207G 0.19 TCGA-CV-A45P-01 19 15996792 15996792 G A CYP4F2 Missense_Mutation p.R353C 0.22 deleterious(0.01) benign(0.128) TCGA-CV-A45P-01 19 16963895 16963895 C A SIN3B Missense_Mutation p.R289S 0.29 tolerated(0.99) benign(0.014) TCGA-CV-A45P-01 19 19129969 19129969 C - SUGP2 Frame_Shift_Del p.G600Afs*33 0.16 TCGA-CV-A45P-01 19 33390877 33390877 G C CEP89 Silent p.L587L 0.06 TCGA-CV-A45P-01 19 3494083 3494083 G C DOHH Missense_Mutation p.I98M 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-A45P-01 19 36051372 36051372 G T ATP4A Missense_Mutation p.S227Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-CV-A45P-01 19 36207720 36207720 C G ZBTB32 3'UTR 0.12 TCGA-CV-A45P-01 19 41925110 41925110 G C BCKDHA Missense_Mutation p.L185F 0.14 tolerated(0.7) benign(0.004) TCGA-CV-A45P-01 19 45575432 45575432 C T ZNF296 Silent p.P285P 0.15 TCGA-CV-A45P-01 19 47228061 47228061 C T STRN4 Intron 0.26 TCGA-CV-A45P-01 19 48925189 48925189 C G GRIN2D Missense_Mutation p.Q747E 0.20 tolerated(0.07) benign(0.124) TCGA-CV-A45P-01 19 51446863 51446863 C T KLK5 3'UTR 0.17 TCGA-CV-A45P-01 19 54264407 54264407 G C MIR516A2 RNA 0.09 TCGA-CV-A45P-01 19 57867885 57867885 C G ZNF304 Missense_Mutation p.D216E 0.08 tolerated(0.28) benign(0.204) TCGA-CV-A45P-01 19 6755320 6755320 G A SH2D3A Missense_Mutation p.S168F 0.10 deleterious(0.02) benign(0.002) TCGA-CV-A45P-01 19 7690804 7690804 G A XAB2 Missense_Mutation p.L262F 0.11 deleterious(0.02) probably_damaging(0.973) TCGA-CV-A45P-01 19 9070920 9070920 G C MUC16 Missense_Mutation p.S5509C 0.14 unknown(0) TCGA-CV-A45P-01 1 120510130 120510130 C A NOTCH2 Missense_Mutation p.C460F 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-A45P-01 1 144879470 144879470 G C PDE4DIP Missense_Mutation p.S1327C 0.08 tolerated(0.16) possibly_damaging(0.649) TCGA-CV-A45P-01 1 145533128 145533128 G A ITGA10 Missense_Mutation p.R408H 0.16 deleterious(0.04) benign(0.017) TCGA-CV-A45P-01 1 158817652 158817652 G A MNDA Silent p.L374L 0.13 TCGA-CV-A45P-01 1 192153555 192153555 G A RGS18 Silent p.L193L 0.13 TCGA-CV-A45P-01 1 207252385 207252385 C T PFKFB2 3'Flank 0.19 TCGA-CV-A45P-01 1 211847049 211847049 C G NEK2 Missense_Mutation p.E111Q 0.09 tolerated(0.34) benign(0.011) TCGA-CV-A45P-01 1 226055729 226055729 C T TMEM63A Missense_Mutation p.D125N 0.20 tolerated(0.17) benign(0.092) TCGA-CV-A45P-01 1 228210482 228210482 C T WNT3A Silent p.I62I 0.15 TCGA-CV-A45P-01 1 22848021 22848021 C A ZBTB40 Silent p.T1027T 0.23 TCGA-CV-A45P-01 1 26156186 26156186 G A MTFR1L Missense_Mutation p.C213Y 0.09 tolerated(1) benign(0.003) TCGA-CV-A45P-01 1 28271923 28271923 T C SMPDL3B Missense_Mutation p.I81T 0.22 deleterious(0.03) probably_damaging(0.931) TCGA-CV-A45P-01 1 35485040 35485040 G C ZMYM6 Silent p.L114L 0.19 TCGA-CV-A45P-01 1 44169343 44169343 G C KDM4A Missense_Mutation p.R966T 0.16 deleterious(0) possibly_damaging(0.587) TCGA-CV-A45P-01 1 52901123 52901123 G A ZCCHC11 Missense_Mutation p.R1393C 0.17 deleterious(0) possibly_damaging(0.88) TCGA-CV-A45P-01 1 59041876 59041876 C G TACSTD2 Missense_Mutation p.R318T 0.11 tolerated(0.08) benign(0.164) TCGA-CV-A45P-01 1 62979403 62979403 G C DOCK7 Missense_Mutation p.S1337C 0.22 deleterious(0) probably_damaging(0.978) TCGA-CV-A45P-01 1 6638800 6638801 - T TAS1R1 Frame_Shift_Ins p.L562Ffs*3 0.12 TCGA-CV-A45P-01 1 9322255 9322255 C G H6PD Missense_Mutation p.Q295E 0.13 tolerated(0.19) benign(0.013) TCGA-CV-A45P-01 20 10603741 10603741 G C SLX4IP Missense_Mutation p.G314A 0.11 tolerated(0.31) benign(0.058) TCGA-CV-A45P-01 20 30602817 30602817 C T CCM2L Silent p.P47P 0.16 TCGA-CV-A45P-01 20 48744557 48744557 T A TMEM189-UBE2V1 Missense_Mutation p.I216F 0.36 deleterious_low_confidence(0) benign(0.361) TCGA-CV-A45P-01 20 62339987 62339987 C T ZGPAT Nonsense_Mutation p.Q19* 0.13 TCGA-CV-A45P-01 21 30426392 30426392 G C USP16 Missense_Mutation p.E786Q 0.17 deleterious(0.02) possibly_damaging(0.901) TCGA-CV-A45P-01 21 34968082 34968082 C T CRYZL1 Missense_Mutation p.D287N 0.25 deleterious(0.02) possibly_damaging(0.697) TCGA-CV-A45P-01 21 38560888 38560888 G A TTC3 Silent p.L1672L 0.13 TCGA-CV-A45P-01 21 42748826 42748826 G T MX2 5'UTR 0.16 TCGA-CV-A45P-01 22 34157482 34157482 C G LARGE 5'UTR 0.15 TCGA-CV-A45P-01 22 35802584 35802584 C T MCM5 Silent p.I154I 0.15 TCGA-CV-A45P-01 22 49042509 49042509 A G FAM19A5 Silent p.R71R 0.08 TCGA-CV-A45P-01 2 202149973 202149973 C T CASP8 Nonsense_Mutation p.R472* 0.35 TCGA-CV-A45P-01 2 26152259 26152259 G A KIF3C Missense_Mutation p.R735C 0.16 possibly_damaging(0.725) TCGA-CV-A45P-01 2 27500790 27500790 C T DNAJC5G Silent p.Y94Y 0.11 TCGA-CV-A45P-01 2 46234756 46234756 G C PRKCE Missense_Mutation p.E407Q 0.21 deleterious(0) benign(0.078) TCGA-CV-A45P-01 2 88874590 88874590 G T EIF2AK3 Missense_Mutation p.S804Y 0.20 tolerated(0.11) possibly_damaging(0.818) TCGA-CV-A45P-01 2 99155988 99155988 C T INPP4A Intron 0.09 TCGA-CV-A45P-01 2 99438684 99438684 G C KIAA1211L Silent p.V684V 0.19 TCGA-CV-A45P-01 3 119133479 119133479 C A ARHGAP31 Silent p.G901G 0.14 TCGA-CV-A45P-01 3 127396349 127396349 C G ABTB1 Missense_Mutation p.F268L 0.18 tolerated(0.62) benign(0.004) TCGA-CV-A45P-01 3 134920369 134920369 C A EPHB1 Silent p.I728I 0.17 TCGA-CV-A45P-01 3 138433523 138433523 G A PIK3CB Silent p.L363L 0.12 TCGA-CV-A45P-01 3 186917822 186917822 C T RTP1 Silent p.I252I 0.18 TCGA-CV-A45P-01 3 190122681 190122681 C T CLDN16 Silent p.I186I 0.13 TCGA-CV-A45P-01 3 193855479 193855479 G A HES1 Silent p.L100L 0.15 TCGA-CV-A45P-01 3 30732942 30732942 G A TGFBR2 Missense_Mutation p.E544K 0.17 deleterious(0) probably_damaging(0.992) TCGA-CV-A45P-01 3 439980 439980 G A CHL1 Silent p.P1055P 0.09 TCGA-CV-A45P-01 3 47476622 47476622 G C SCAP Missense_Mutation p.P43R 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A45P-01 3 50413396 50413396 C G CACNA2D2 Missense_Mutation p.E591Q 0.18 tolerated(0.21) possibly_damaging(0.882) TCGA-CV-A45P-01 3 50413408 50413408 C T CACNA2D2 Missense_Mutation p.E587K 0.16 tolerated(0.1) benign(0.164) TCGA-CV-A45P-01 3 9036108 9036108 C T SRGAP3 Missense_Mutation p.R776H 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A45P-01 4 126371237 126371237 C G FAT4 Missense_Mutation p.F3022L 0.11 benign(0.009) TCGA-CV-A45P-01 4 147561481 147561481 G A POU4F2 Missense_Mutation p.V251M 0.15 tolerated(0.07) probably_damaging(0.993) TCGA-CV-A45P-01 4 16168327 16168327 G A TAPT1 Missense_Mutation p.S468L 0.14 tolerated(0.32) benign(0) TCGA-CV-A45P-01 4 169611869 169611869 C T PALLD Missense_Mutation p.S484F 0.17 deleterious(0) probably_damaging(0.998) TCGA-CV-A45P-01 4 1725454 1725454 G C TACC3 Splice_Site p.X55_splice 0.14 TCGA-CV-A45P-01 4 188923976 188923976 G A ZFP42 Silent p.L5L 0.25 TCGA-CV-A45P-01 4 22389832 22389832 G T GPR125 Missense_Mutation p.H1154Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-A45P-01 4 3954881 3954881 C G FAM86EP RNA 0.06 TCGA-CV-A45P-01 4 52860589 52860589 C T LRRC66 Missense_Mutation p.D867N 0.10 tolerated(0.13) benign(0.005) TCGA-CV-A45P-01 4 5332963 5332963 G A STK32B Missense_Mutation p.E93K 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A45P-01 5 130797624 130797624 C A RAPGEF6 Nonsense_Mutation p.E880* 0.12 TCGA-CV-A45P-01 5 130797642 130797642 C G RAPGEF6 Missense_Mutation p.D874H 0.12 deleterious(0.02) probably_damaging(0.918) TCGA-CV-A45P-01 5 1403077 1403077 G A SLC6A3 Missense_Mutation p.A576V 0.08 tolerated(0.09) benign(0.187) TCGA-CV-A45P-01 5 140573209 140573209 G C PCDHB10 Missense_Mutation p.E362Q 0.22 deleterious_low_confidence(0.01) benign(0.179) TCGA-CV-A45P-01 5 140735118 140735118 G T PCDHGA4 Missense_Mutation p.L117F 0.13 tolerated_low_confidence(0.64) benign(0) TCGA-CV-A45P-01 5 149359973 149359973 C G SLC26A2 Missense_Mutation p.L273V 0.15 deleterious(0.03) probably_damaging(0.919) TCGA-CV-A45P-01 5 176011783 176011783 C T CDHR2 Missense_Mutation p.S834L 0.10 tolerated(0.51) benign(0.029) TCGA-CV-A45P-01 5 176814778 176814778 C T SLC34A1 Missense_Mutation p.S183F 0.16 deleterious(0.05) possibly_damaging(0.56) TCGA-CV-A45P-01 5 23510065 23510065 G A PRDM9 Missense_Mutation p.R77Q 0.18 tolerated_low_confidence(0.22) benign(0.002) TCGA-CV-A45P-01 5 34757697 34757697 A G RAI14 Missense_Mutation p.K57R 0.15 tolerated(0.06) benign(0.113) TCGA-CV-A45P-01 5 35065601 35065601 C T PRLR Missense_Mutation p.D487N 0.20 tolerated(0.28) benign(0.086) TCGA-CV-A45P-01 5 35857012 35857012 C T IL7R 5'UTR 0.16 TCGA-CV-A45P-01 5 35991370 35991370 C G UGT3A1 5'UTR 0.13 TCGA-CV-A45P-01 5 56224689 56224689 C G MIER3 Intron 0.24 TCGA-CV-A45P-01 5 61699562 61699562 C T DIMT1 Missense_Mutation p.R13H 0.13 tolerated(0.38) benign(0) TCGA-CV-A45P-01 5 96235857 96235857 A G ERAP2 Silent p.G512G 0.10 TCGA-CV-A45P-01 6 116757339 116757339 G C DSE Missense_Mutation p.D570H 0.31 deleterious(0) probably_damaging(0.999) TCGA-CV-A45P-01 6 136698928 136698928 C G MAP7 Missense_Mutation p.R261T 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-A45P-01 6 157528521 157528521 G T ARID1B Silent p.V2082V 0.24 TCGA-CV-A45P-01 6 26216457 26216457 G C HIST1H2BG 3'UTR 0.14 TCGA-CV-A45P-01 6 30673794 30673794 G A MDC1 Nonsense_Mutation p.Q1056* 0.14 TCGA-CV-A45P-01 6 33258544 33258544 G T PFDN6 Missense_Mutation p.Q104H 0.22 tolerated(1) benign(0.009) TCGA-CV-A45P-01 6 35544827 35544827 G A FKBP5 Missense_Mutation p.R404W 0.14 deleterious(0) probably_damaging(0.963) TCGA-CV-A45P-01 6 43153816 43153816 G A CUL9 Missense_Mutation p.E292K 0.16 tolerated(0.07) benign(0.119) TCGA-CV-A45P-01 6 43415659 43415659 G C ABCC10 Missense_Mutation p.E1315Q 0.11 tolerated(0.36) benign(0.059) TCGA-CV-A45P-01 7 141770873 141770873 G T MGAM Intron 0.20 TCGA-CV-A45P-01 7 142139461 142139461 C T TRBV7-6 Missense_Mutation p.R55Q 0.05 tolerated(0.25) benign(0.018) TCGA-CV-A45P-01 7 34724253 34724253 G C NPSR1 Missense_Mutation p.K79N 0.20 deleterious(0) benign(0.135) TCGA-CV-A45P-01 7 4828507 4828507 C T AP5Z1 Silent p.A544A 0.13 TCGA-CV-A45P-01 7 6441974 6441974 C T RAC1 Missense_Mutation p.A178V 0.17 deleterious(0) probably_damaging(0.986) TCGA-CV-A45P-01 7 87195485 87195485 G A ABCB1 Silent p.F201F 0.26 TCGA-CV-A45P-01 7 99799597 99799597 G A STAG3 Missense_Mutation p.R776K 0.27 tolerated(0.61) benign(0.005) TCGA-CV-A45P-01 8 110334609 110334609 C T NUDCD1 Missense_Mutation p.D68N 0.32 deleterious(0.04) benign(0.224) TCGA-CV-A45P-01 8 118540969 118540969 C T MED30 Missense_Mutation p.S86L 0.29 deleterious(0.05) benign(0.265) TCGA-CV-A45P-01 8 143784819 143784819 C T LY6K 3'UTR 0.10 TCGA-CV-A45P-01 8 145112802 145112802 G A OPLAH Silent p.P371P 0.36 TCGA-CV-A45P-01 8 15967588 15967588 G A MSR1 3'UTR 0.17 TCGA-CV-A45P-01 8 36793355 36793355 G C KCNU1 Missense_Mutation p.G1123R 0.28 deleterious_low_confidence(0.02) benign(0.068) TCGA-CV-A45P-01 8 53071513 53071513 C T ST18 Missense_Mutation p.R584H 0.20 deleterious(0.04) possibly_damaging(0.458) TCGA-CV-A45P-01 8 68163661 68163661 C G ARFGEF1 Missense_Mutation p.R908T 0.13 deleterious(0) probably_damaging(0.937) TCGA-CV-A45P-01 8 96166674 96166674 C T PLEKHF2 Silent p.L134L 0.23 TCGA-CV-A45P-01 8 99591900 99591900 C G STK3 Missense_Mutation p.E342Q 0.13 tolerated(0.21) benign(0.187) TCGA-CV-A45P-01 9 117825457 117825457 C T TNC Missense_Mutation p.D1258N 0.19 tolerated(0.31) benign(0.122) TCGA-CV-A45P-01 9 132571963 132571963 T G TOR1B 3'UTR 0.19 TCGA-CV-A45P-01 9 21166096 21166096 C A IFNA21 Missense_Mutation p.M172I 0.18 tolerated(0.09) benign(0.025) TCGA-CV-A45P-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.39 TCGA-CV-A45P-01 9 36170445 36170445 C T CCIN Missense_Mutation p.R316W 0.21 deleterious(0) probably_damaging(0.956) TCGA-CV-A45P-01 9 95077246 95077246 T C NOL8 Missense_Mutation p.N554S 0.16 tolerated(0.19) benign(0.013) TCGA-CV-A45P-01 X 101857799 101857799 C G ARMCX5 Missense_Mutation p.P244A 0.14 tolerated(0.05) benign(0.028) TCGA-CV-A45P-01 X 107408111 107408111 C A COL4A6 Silent p.L1323L 0.18 TCGA-CV-A45P-01 X 122318299 122318299 G C GRIA3 5'UTR 0.17 TCGA-CV-A45P-01 X 129059976 129059976 G A UTP14A Missense_Mutation p.E611K 0.17 deleterious(0) probably_damaging(0.983) TCGA-CV-A45P-01 X 151123917 151123917 C A GABRE Missense_Mutation p.A354S 0.15 deleterious(0) probably_damaging(0.996) TCGA-CV-A45P-01 X 152085679 152085679 C T ZNF185 Missense_Mutation p.P77S 0.13 deleterious(0.05) benign(0.387) TCGA-CV-A45P-01 X 153590634 153590634 C T FLNA Missense_Mutation p.E878K 0.12 tolerated(0.06) possibly_damaging(0.745) TCGA-CV-A45P-01 X 2793874 2793874 G C GYG2 Missense_Mutation p.E385D 0.22 tolerated(0.18) benign(0.272) TCGA-CV-A45P-01 X 54587126 54587126 C G GNL3L 3'UTR 0.17 TCGA-CV-A45P-01 X 5811433 5811433 G A NLGN4X Missense_Mutation p.R626W 0.21 deleterious(0) probably_damaging(0.988) TCGA-CV-A45P-01 X 64722218 64722218 C G ZC3H12B Nonsense_Mutation p.S547* 0.15 TCGA-CV-A45P-01 X 69354494 69354494 C T IGBP1 Missense_Mutation p.R104W 0.21 tolerated(0.09) benign(0.013) TCGA-CV-A45P-01 X 70331333 70331333 C A IL2RG Silent p.L19L 0.08 TCGA-CV-A45Q-01 10 102738058 102738058 G A SEMA4G Missense_Mutation p.E148K 0.27 tolerated(0.18) benign(0.08) TCGA-CV-A45Q-01 10 103827017 103827017 G A HPS6 Missense_Mutation p.G596R 0.26 deleterious(0.02) possibly_damaging(0.894) TCGA-CV-A45Q-01 10 104161543 104161543 G C NFKB2 Missense_Mutation p.E779Q 0.13 tolerated(0.3) benign(0.126) TCGA-CV-A45Q-01 10 105331513 105331513 C T NEURL1 Missense_Mutation p.R195C 0.25 deleterious(0.03) probably_damaging(0.95) TCGA-CV-A45Q-01 10 116060094 116060094 G C AFAP1L2 Missense_Mutation p.P606A 0.27 tolerated(0.3) benign(0.005) TCGA-CV-A45Q-01 10 121551624 121551624 C G INPP5F Intron 0.25 TCGA-CV-A45Q-01 10 124896593 124896593 G A HMX3 Silent p.L140L 0.32 TCGA-CV-A45Q-01 10 127569387 127569387 C T DHX32 Missense_Mutation p.E3K 0.29 deleterious_low_confidence(0.02) benign(0.054) TCGA-CV-A45Q-01 10 28250520 28250520 G A ARMC4 Nonsense_Mutation p.Q455* 0.26 TCGA-CV-A45Q-01 10 38121522 38121522 C T ZNF248 Missense_Mutation p.S254N 0.19 tolerated(0.58) benign(0.002) TCGA-CV-A45Q-01 10 7830209 7830209 G C ATP5C1 Missense_Mutation p.W13C 0.14 tolerated(0.19) benign(0) TCGA-CV-A45Q-01 10 90342943 90342943 G A RNLS Missense_Mutation p.A2V 0.15 tolerated(0.06) benign(0.013) TCGA-CV-A45Q-01 10 94225476 94225476 G C IDE Missense_Mutation p.I815M 0.22 deleterious(0) probably_damaging(0.912) TCGA-CV-A45Q-01 10 98392664 98392664 C T PIK3AP1 Intron 0.25 TCGA-CV-A45Q-01 11 101347192 101347192 C T TRPC6 Missense_Mutation p.M528I 0.21 tolerated(0.63) benign(0.011) TCGA-CV-A45Q-01 11 111754583 111754583 G A C11orf1 Missense_Mutation p.M144I 0.24 tolerated(0.22) benign(0.243) TCGA-CV-A45Q-01 11 118498622 118498622 C T PHLDB1 Silent p.I361I 0.29 TCGA-CV-A45Q-01 11 118498655 118498655 C T PHLDB1 Silent p.L372L 0.28 TCGA-CV-A45Q-01 11 118509672 118509672 G A PHLDB1 Missense_Mutation p.E867K 0.23 deleterious(0) possibly_damaging(0.826) TCGA-CV-A45Q-01 11 118514626 118514626 G A PHLDB1 Missense_Mutation p.V996M 0.24 deleterious(0.04) benign(0.135) TCGA-CV-A45Q-01 11 119025031 119025031 C T ABCG4 Missense_Mutation p.R140C 0.29 deleterious(0) probably_damaging(0.995) TCGA-CV-A45Q-01 11 1214006 1214006 A G MUC5AC Splice_Site 0.37 TCGA-CV-A45Q-01 11 12262600 12262600 C T MICAL2 Missense_Mutation p.S743L 0.21 tolerated(0.15) benign(0.219) TCGA-CV-A45Q-01 11 123598959 123598959 C T ZNF202 Silent p.T238T 0.07 TCGA-CV-A45Q-01 11 128782077 128782077 C T KCNJ5 Silent p.V303V 0.27 TCGA-CV-A45Q-01 11 21592355 21592355 C G NELL1 Missense_Mutation p.P676A 0.25 deleterious(0.02) possibly_damaging(0.78) TCGA-CV-A45Q-01 11 433424 433424 G C ANO9 Missense_Mutation p.I80M 0.29 deleterious(0) benign(0.232) TCGA-CV-A45Q-01 11 44135751 44135751 G A EXT2 Missense_Mutation p.G248S 0.24 deleterious(0.04) probably_damaging(0.919) TCGA-CV-A45Q-01 11 46920136 46920136 C G LRP4 Missense_Mutation p.D257H 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-CV-A45Q-01 11 47446705 47446705 C G PSMC3 Missense_Mutation p.K84N 0.17 tolerated(0.1) benign(0.049) TCGA-CV-A45Q-01 11 47786901 47786901 C T FNBP4 Silent p.A78A 0.30 TCGA-CV-A45Q-01 11 5364075 5364075 G T OR51B5 Missense_Mutation p.A227D 0.21 deleterious(0) probably_damaging(0.968) TCGA-CV-A45Q-01 11 55063079 55063079 C - TRIM51HP RNA 0.23 TCGA-CV-A45Q-01 11 56237827 56237827 G C OR5M3 Silent p.V49V 0.19 TCGA-CV-A45Q-01 11 60694810 60694810 G C TMEM132A Missense_Mutation p.E79Q 0.26 deleterious(0) probably_damaging(0.994) TCGA-CV-A45Q-01 11 62744824 62744824 C G SLC22A6 Missense_Mutation p.R466P 0.18 deleterious(0) probably_damaging(0.992) TCGA-CV-A45Q-01 11 64602360 64602360 C T CDC42BPG Silent p.L712L 0.29 TCGA-CV-A45Q-01 11 65486431 65486431 G C KAT5 Intron 0.22 TCGA-CV-A45Q-01 11 65658862 65658862 G A CCDC85B Silent p.%3D 0.12 TCGA-CV-A45Q-01 11 76982353 76982353 C G GDPD4 Missense_Mutation p.G98A 0.19 tolerated(0.41) possibly_damaging(0.888) TCGA-CV-A45Q-01 12 101766734 101766734 C G UTP20 Missense_Mutation p.Q2291E 0.35 deleterious(0.01) probably_damaging(0.97) TCGA-CV-A45Q-01 12 103260425 103260425 A C PAH Missense_Mutation p.V153G 0.13 deleterious(0.01) probably_damaging(0.936) TCGA-CV-A45Q-01 12 103260442 103260442 C A PAH Splice_Site p.X148_splice 0.16 TCGA-CV-A45Q-01 12 113836333 113836333 C A SDS Missense_Mutation p.D138Y 0.28 deleterious(0.03) possibly_damaging(0.675) TCGA-CV-A45Q-01 12 118198822 118198822 G A KSR2 Missense_Mutation p.T327M 0.36 deleterious(0) possibly_damaging(0.891) TCGA-CV-A45Q-01 12 19475312 19475312 C A PLEKHA5 Silent p.L762L 0.37 TCGA-CV-A45Q-01 12 4430449 4430449 C T C12orf5 Silent p.F4F 0.28 TCGA-CV-A45Q-01 12 53554913 53554913 C G CSAD Missense_Mutation p.Q321H 0.26 tolerated(0.24) benign(0.003) TCGA-CV-A45Q-01 12 56216472 56216472 G A DNAJC14 Missense_Mutation p.A560V 0.28 deleterious(0) probably_damaging(0.971) TCGA-CV-A45Q-01 12 57112437 57112437 C T NACA Intron 0.26 TCGA-CV-A45Q-01 12 57437747 57437747 C T MYO1A Missense_Mutation p.R262Q 0.26 tolerated(0.79) benign(0.004) TCGA-CV-A45Q-01 12 58021630 58021630 C T B4GALNT1 Silent p.A385A 0.27 TCGA-CV-A45Q-01 12 6134769 6134769 C T VWF Missense_Mutation p.V1067I 0.21 tolerated(0.6) benign(0.009) TCGA-CV-A45Q-01 12 6566632 6566632 C T TAPBPL Missense_Mutation p.S209F 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-CV-A45Q-01 12 69993770 69993770 C T CCT2 Silent p.I521I 0.30 TCGA-CV-A45Q-01 12 7046408 7046408 G A ATN1 Missense_Mutation p.G660R 0.38 probably_damaging(0.999) TCGA-CV-A45Q-01 12 79611333 79611333 G A SYT1 Missense_Mutation p.A12T 0.21 tolerated(0.07) benign(0) TCGA-CV-A45Q-01 13 113742891 113742891 G A MCF2L Missense_Mutation p.R928Q 0.22 tolerated(0.32) benign(0.192) TCGA-CV-A45Q-01 13 21306231 21306231 T C N6AMT2 Missense_Mutation p.Y86C 0.18 deleterious(0) probably_damaging(0.997) TCGA-CV-A45Q-01 13 30075261 30075261 A G MTUS2 Missense_Mutation p.K1286E 0.16 deleterious(0) possibly_damaging(0.846) TCGA-CV-A45Q-01 13 37269129 37269129 C G SERTM1 5'UTR 0.29 TCGA-CV-A45Q-01 13 37602362 37602362 A T SUPT20H Silent p.L358L 0.13 TCGA-CV-A45Q-01 13 38211308 38211308 C G TRPC4 Missense_Mutation p.R894P 0.29 tolerated_low_confidence(0.15) benign(0.007) TCGA-CV-A45Q-01 13 39622100 39622100 G C NHLRC3 3'UTR 0.19 TCGA-CV-A45Q-01 13 43986078 43986078 C A ENOX1 Missense_Mutation p.G61V 0.41 deleterious(0) probably_damaging(0.989) TCGA-CV-A45Q-01 13 51961614 51961614 T A INTS6 Missense_Mutation p.I268L 0.26 deleterious(0.01) benign(0.06) TCGA-CV-A45Q-01 13 73345252 73345252 G A DIS3 Missense_Mutation p.S546F 0.24 deleterious(0) probably_damaging(0.971) TCGA-CV-A45Q-01 13 77629732 77629732 C G MYCBP2 Missense_Mutation p.M4498I 0.17 possibly_damaging(0.655) TCGA-CV-A45Q-01 14 21167607 21167607 C G RNASE4 Missense_Mutation p.S26C 0.48 deleterious(0.01) probably_damaging(0.959) TCGA-CV-A45Q-01 14 21867787 21867787 G A CHD8 Missense_Mutation p.S1632L 0.25 deleterious(0) benign(0.381) TCGA-CV-A45Q-01 14 22783229 22783229 G A TRAV40 Silent p.Q65Q 0.48 TCGA-CV-A45Q-01 14 23450571 23450571 G - AJUBA Frame_Shift_Del p.S302Wfs*108 0.35 TCGA-CV-A45Q-01 14 23451169 23451169 G A AJUBA Nonsense_Mutation p.Q103* 0.22 TCGA-CV-A45Q-01 14 23863279 23863279 C T MYH6 Missense_Mutation p.A895T 0.59 tolerated(0.07) benign(0.029) TCGA-CV-A45Q-01 14 24737595 24737595 C T RABGGTA Silent p.T346T 0.17 TCGA-CV-A45Q-01 14 34420027 34420027 G T EGLN3 5'UTR 0.15 TCGA-CV-A45Q-01 14 35579122 35579122 G T PPP2R3C Missense_Mutation p.L103M 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-CV-A45Q-01 14 38679099 38679099 C T SSTR1 Missense_Mutation p.R169C 0.15 deleterious(0) probably_damaging(0.993) TCGA-CV-A45Q-01 14 45433482 45433482 C G FAM179B Missense_Mutation p.Q620E 0.52 deleterious(0.02) possibly_damaging(0.839) TCGA-CV-A45Q-01 14 55218240 55218240 G C SAMD4A Silent p.L387L 0.53 TCGA-CV-A45Q-01 14 75248748 75248748 C G YLPM1 Missense_Mutation p.P668A 0.21 possibly_damaging(0.66) TCGA-CV-A45Q-01 14 75248853 75248853 C A YLPM1 Missense_Mutation p.P703T 0.22 benign(0.068) TCGA-CV-A45Q-01 14 76425518 76425518 G A TGFB3 3'UTR 0.17 TCGA-CV-A45Q-01 14 80271515 80271515 G C NRXN3 Missense_Mutation p.E956Q 0.48 deleterious(0.05) benign(0.001) TCGA-CV-A45Q-01 14 88963635 88963635 C T PTPN21 Splice_Site p.X255_splice 0.40 TCGA-CV-A45Q-01 14 91360786 91360786 C T RPS6KA5 Missense_Mutation p.G539R 0.15 tolerated(0.14) possibly_damaging(0.819) TCGA-CV-A45Q-01 14 93151411 93151411 G A RIN3 Silent p.L849L 0.23 TCGA-CV-A45Q-01 14 99182494 99182494 G C C14orf177 5'UTR 0.19 TCGA-CV-A45Q-01 15 101605686 101605686 G C LRRK1 Missense_Mutation p.A1682P 0.20 tolerated(0.73) benign(0) TCGA-CV-A45Q-01 15 41276075 41276075 G A INO80 Silent p.D1374D 0.16 TCGA-CV-A45Q-01 15 45439714 45439714 G A DUOX1 Silent p.L802L 0.40 TCGA-CV-A45Q-01 15 48058088 48058088 G C SEMA6D Missense_Mutation p.D484H 0.37 deleterious(0) probably_damaging(1) TCGA-CV-A45Q-01 15 52606036 52606036 G A MYO5A Nonsense_Mutation p.R1809* 0.30 TCGA-CV-A45Q-01 15 62207862 62207862 G C VPS13C Missense_Mutation p.F2805L 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Q-01 15 63073370 63073370 G C TLN2 Missense_Mutation p.G1849A 0.22 tolerated(0.19) benign(0.005) TCGA-CV-A45Q-01 15 66618577 66618577 C T DIS3L Silent p.V692V 0.25 TCGA-CV-A45Q-01 15 67358682 67358682 T A SMAD3 Missense_Mutation p.C64S 0.41 deleterious(0) probably_damaging(0.928) TCGA-CV-A45Q-01 15 70961694 70961694 C G UACA Missense_Mutation p.K443N 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Q-01 15 77425448 77425448 C G PEAK1 Missense_Mutation p.D1326H 0.13 tolerated(0.68) probably_damaging(0.999) TCGA-CV-A45Q-01 15 91461609 91461609 C G MAN2A2 Silent p.L1060L 0.32 TCGA-CV-A45Q-01 16 2111962 2111962 C T TSC2 Nonsense_Mutation p.Q404* 0.23 TCGA-CV-A45Q-01 16 30748845 30748845 C G SRCAP Missense_Mutation p.S2495C 0.33 unknown(0) TCGA-CV-A45Q-01 16 31487352 31487352 G A TGFB1I1 Missense_Mutation p.R245H 0.16 tolerated(0.08) benign(0.015) TCGA-CV-A45Q-01 16 57973370 57973370 C T CNGB1 Missense_Mutation p.E446K 0.14 tolerated(0.23) benign(0) TCGA-CV-A45Q-01 16 58076194 58076194 C T MMP15 Silent p.I408I 0.25 TCGA-CV-A45Q-01 16 74678518 74678518 G A RFWD3 Missense_Mutation p.S303L 0.16 deleterious(0.01) possibly_damaging(0.791) TCGA-CV-A45Q-01 16 74683082 74683082 G A RFWD3 Missense_Mutation p.S247L 0.26 deleterious(0.01) benign(0.015) TCGA-CV-A45Q-01 16 74957842 74957842 G C WDR59 Silent p.V237V 0.27 TCGA-CV-A45Q-01 16 80646537 80646537 G C CDYL2 Missense_Mutation p.L402V 0.21 deleterious(0.03) probably_damaging(0.979) TCGA-CV-A45Q-01 16 8999176 8999176 C G USP7 Missense_Mutation p.D481H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Q-01 16 90103732 90103732 C G GAS8 Silent p.L283L 0.40 TCGA-CV-A45Q-01 17 10415996 10415996 A T MYH1 Splice_Site p.X336_splice 0.19 TCGA-CV-A45Q-01 17 12647665 12647665 C A MYOCD Missense_Mutation p.L295M 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-CV-A45Q-01 17 16285800 16285800 G A UBB Silent p.Q193Q 0.22 TCGA-CV-A45Q-01 17 16527527 16527527 G C ZNF624 Missense_Mutation p.Q225E 0.24 tolerated(0.45) benign(0.01) TCGA-CV-A45Q-01 17 16703579 16703579 T A CCDC144A 3'UTR 0.25 TCGA-CV-A45Q-01 17 17399376 17399376 G A RASD1 Silent p.I40I 0.32 TCGA-CV-A45Q-01 17 2202460 2202460 C T SMG6 Silent p.Q529Q 0.27 TCGA-CV-A45Q-01 17 29061819 29061819 G T CTD-2349P21.5 3'Flank 0.33 TCGA-CV-A45Q-01 17 3101367 3101367 G C OR1A2 Silent p.L185L 0.18 TCGA-CV-A45Q-01 17 3592908 3592908 C G P2RX5 Missense_Mutation p.V211L 0.27 deleterious(0.04) benign(0.03) TCGA-CV-A45Q-01 17 35932001 35932001 C T SYNRG Silent p.G329G 0.25 TCGA-CV-A45Q-01 17 38027760 38027760 G C ZPBP2 Silent p.V96V 0.27 TCGA-CV-A45Q-01 17 40312144 40312144 C G KCNH4 Missense_Mutation p.G990R 0.30 tolerated_low_confidence(0.39) benign(0.001) TCGA-CV-A45Q-01 17 43037675 43037675 C T C1QL1 Missense_Mutation p.V220M 0.34 deleterious(0) probably_damaging(0.994) TCGA-CV-A45Q-01 17 44248524 44248525 AA - KANSL1 Frame_Shift_Del p.L329Efs*22 0.13 TCGA-CV-A45Q-01 17 45776755 45776755 C A TBKBP1 Missense_Mutation p.A235D 0.23 deleterious(0.03) benign(0.297) TCGA-CV-A45Q-01 17 46673760 46673760 C G HOXB6 3'UTR 0.23 TCGA-CV-A45Q-01 17 58511373 58511373 C G C17orf64 3'Flank 0.27 TCGA-CV-A45Q-01 17 71166180 71166180 G C SSTR2 Missense_Mutation p.R241P 0.18 deleterious(0) possibly_damaging(0.467) TCGA-CV-A45Q-01 17 71281756 71281756 G C CDC42EP4 Nonsense_Mutation p.S295* 0.28 TCGA-CV-A45Q-01 17 74076447 74076447 C G ZACN Silent p.L162L 0.26 TCGA-CV-A45Q-01 17 7579722 7579722 C G TP53 Splice_Site p.X25_splice 0.34 TCGA-CV-A45Q-01 17 76354722 76354722 G A SOCS3 Missense_Mutation p.S152F 0.31 tolerated(0.11) benign(0.003) TCGA-CV-A45Q-01 17 78897295 78897295 C T RPTOR Missense_Mutation p.S877F 0.24 tolerated(0.06) possibly_damaging(0.878) TCGA-CV-A45Q-01 17 8784301 8784301 G T PIK3R5 Missense_Mutation p.Q806K 0.22 deleterious(0.01) benign(0.257) TCGA-CV-A45Q-01 18 25532005 25532005 A C CDH2 3'UTR 0.24 TCGA-CV-A45Q-01 18 2700874 2700874 G T SMCHD1 Missense_Mutation p.L535F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A45Q-01 18 31324706 31324706 G C ASXL3 Missense_Mutation p.E1632Q 0.25 benign(0.312) TCGA-CV-A45Q-01 18 31326603 31326603 C A ASXL3 3'UTR 0.25 TCGA-CV-A45Q-01 18 32386188 32386188 G T DTNA Missense_Mutation p.G123V 0.21 deleterious(0.01) probably_damaging(0.931) TCGA-CV-A45Q-01 18 3596988 3596988 C T DLGAP1 Intron 0.18 TCGA-CV-A45Q-01 18 3597002 3597002 C T DLGAP1 Intron 0.27 TCGA-CV-A45Q-01 18 50278720 50278720 C A DCC Silent p.R130R 0.25 TCGA-CV-A45Q-01 18 59203765 59203765 C G CDH20 Missense_Mutation p.F437L 0.30 deleterious(0.02) benign(0.013) TCGA-CV-A45Q-01 18 61585204 61585204 C G SERPINB10 Missense_Mutation p.F80L 0.24 tolerated(0.67) benign(0.003) TCGA-CV-A45Q-01 18 670689 670689 C T TYMS Intron 0.18 TCGA-CV-A45Q-01 18 670729 670729 C A TYMS Silent p.L198L 0.24 TCGA-CV-A45Q-01 18 6912188 6912188 T A ARHGAP28 3'UTR 0.55 TCGA-CV-A45Q-01 18 70209304 70209304 C T CBLN2 Missense_Mutation p.C31Y 0.26 tolerated_low_confidence(1) benign(0) TCGA-CV-A45Q-01 18 77623925 77623925 C T KCNG2 Silent p.R86R 0.35 TCGA-CV-A45Q-01 19 10444650 10444650 G A ICAM3 Silent p.V509V 0.24 TCGA-CV-A45Q-01 19 11032100 11032100 G A CARM1 Missense_Mutation p.M555I 0.29 deleterious_low_confidence(0.03) benign(0.292) TCGA-CV-A45Q-01 19 1255542 1255542 G A MIDN Silent p.S326S 0.17 TCGA-CV-A45Q-01 19 12637155 12637155 A C ZNF564 3'UTR 0.38 TCGA-CV-A45Q-01 19 1271989 1271989 G C CIRBP Missense_Mutation p.Q147H 0.20 tolerated(0.08) unknown(0) TCGA-CV-A45Q-01 19 12976805 12976805 G C MAST1 Missense_Mutation p.E640Q 0.18 deleterious(0) possibly_damaging(0.857) TCGA-CV-A45Q-01 19 17382437 17382437 C T BABAM1 Missense_Mutation p.S106L 0.33 deleterious(0.01) benign(0.318) TCGA-CV-A45Q-01 19 22836775 22836775 C A ZNF492 Missense_Mutation p.P30T 0.18 deleterious(0) possibly_damaging(0.908) TCGA-CV-A45Q-01 19 24097721 24097721 C T ZNF726 5'UTR 0.26 TCGA-CV-A45Q-01 19 31768178 31768178 C A TSHZ3 Nonsense_Mutation p.E841* 0.22 TCGA-CV-A45Q-01 19 36210688 36210688 C T KMT2B Nonsense_Mutation p.R147* 0.21 TCGA-CV-A45Q-01 19 38230496 38230496 C T ZNF573 Missense_Mutation p.E299K 0.20 tolerated(0.06) benign(0.002) TCGA-CV-A45Q-01 19 39224390 39224390 G C CAPN12 Missense_Mutation p.S637C 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A45Q-01 19 39329240 39329240 T C HNRNPL Splice_Site p.X452_splice 0.33 TCGA-CV-A45Q-01 19 40900809 40900809 G A PRX Silent p.I1150I 0.31 TCGA-CV-A45Q-01 19 42713954 42713954 G A DEDD2 Missense_Mutation p.R163W 0.11 deleterious(0.01) benign(0.097) TCGA-CV-A45Q-01 19 47225314 47225314 G C STRN4 Missense_Mutation p.S681C 0.23 deleterious(0) probably_damaging(0.997) TCGA-CV-A45Q-01 19 49299706 49299706 C A BCAT2 Missense_Mutation p.Q373H 0.27 tolerated(0.42) benign(0.001) TCGA-CV-A45Q-01 19 49299738 49299738 C T BCAT2 Missense_Mutation p.E363K 0.26 tolerated(0.13) benign(0.035) TCGA-CV-A45Q-01 19 5456148 5456148 G A ZNRF4 Missense_Mutation p.E216K 0.19 deleterious(0.04) possibly_damaging(0.63) TCGA-CV-A45Q-01 19 54973654 54973654 C T LENG9 Silent p.G374G 0.27 TCGA-CV-A45Q-01 19 56669875 56669875 T C ZNF444 Missense_Mutation p.S104P 0.23 tolerated(0.19) benign(0.022) TCGA-CV-A45Q-01 19 57133835 57133835 C T ZNF71 Missense_Mutation p.R394C 0.21 deleterious(0.03) probably_damaging(0.984) TCGA-CV-A45Q-01 19 57334959 57334959 A C PEG3 Splice_Site p.X161_splice 0.26 TCGA-CV-A45Q-01 19 6718272 6718272 G C C3 Missense_Mutation p.T140S 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-CV-A45Q-01 19 6744700 6744700 G A TRIP10 Missense_Mutation p.D260N 0.27 tolerated(0.53) benign(0.002) TCGA-CV-A45Q-01 1 110086442 110086442 C T GPR61 Silent p.V266V 0.23 TCGA-CV-A45Q-01 1 110585752 110585752 G A STRIP1 Missense_Mutation p.E310K 0.33 tolerated(0.34) benign(0.041) TCGA-CV-A45Q-01 1 114499369 114499369 C T HIPK1 Silent p.L510L 0.20 TCGA-CV-A45Q-01 1 115576668 115576668 C A TSHB Nonsense_Mutation p.Y79* 0.36 TCGA-CV-A45Q-01 1 150463905 150463905 G A TARS2 Missense_Mutation p.R183Q 0.21 tolerated(0.67) benign(0.004) TCGA-CV-A45Q-01 1 152283469 152283469 G A FLG Missense_Mutation p.S1298F 0.24 possibly_damaging(0.485) TCGA-CV-A45Q-01 1 155884061 155884061 C T KIAA0907 Missense_Mutation p.A566T 0.20 deleterious(0.01) benign(0.142) TCGA-CV-A45Q-01 1 156021499 156021499 C T UBQLN4 Silent p.Q86Q 0.32 TCGA-CV-A45Q-01 1 156901815 156901815 C T LRRC71 Silent p.L479L 0.40 TCGA-CV-A45Q-01 1 172414284 172414284 C T C1orf105 Silent p.L31L 0.19 TCGA-CV-A45Q-01 1 197390563 197390563 G A CRB1 Silent p.L535L 0.25 TCGA-CV-A45Q-01 1 200969536 200969536 A T KIF21B Missense_Mutation p.V556D 0.48 tolerated(0.62) benign(0.007) TCGA-CV-A45Q-01 1 20417104 20417104 G T PLA2G5 Silent p.R112R 0.28 TCGA-CV-A45Q-01 1 224544695 224544695 C G CNIH4 Missense_Mutation p.F23L 0.78 deleterious(0.01) benign(0.015) TCGA-CV-A45Q-01 1 235599721 235599721 C G TBCE Missense_Mutation p.S285C 0.23 deleterious(0.02) possibly_damaging(0.764) TCGA-CV-A45Q-01 1 235933543 235933543 G C LYST Missense_Mutation p.H1947D 0.24 deleterious(0) probably_damaging(0.985) TCGA-CV-A45Q-01 1 24409086 24409086 G A MYOM3 Silent p.L697L 0.34 TCGA-CV-A45Q-01 1 24790551 24790551 C T NIPAL3 Missense_Mutation p.T321M 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Q-01 1 27686843 27686843 G C MAP3K6 Missense_Mutation p.H691D 0.14 deleterious(0) benign(0.439) TCGA-CV-A45Q-01 1 31349455 31349455 C T SDC3 Missense_Mutation p.E272K 0.36 deleterious(0.04) unknown(0) TCGA-CV-A45Q-01 1 32800238 32800238 T A MARCKSL1 Missense_Mutation p.E183V 0.26 deleterious(0) unknown(0) TCGA-CV-A45Q-01 1 32800239 32800239 C G MARCKSL1 Missense_Mutation p.E183Q 0.27 deleterious(0) unknown(0) TCGA-CV-A45Q-01 1 33549576 33549576 G A ADC Missense_Mutation p.V43M 0.37 deleterious(0.02) possibly_damaging(0.839) TCGA-CV-A45Q-01 1 35563106 35563106 G A ZMYM1 Missense_Mutation p.E120K 0.20 tolerated_low_confidence(0.26) possibly_damaging(0.699) TCGA-CV-A45Q-01 1 48705107 48705107 G A SLC5A9 Silent p.L550L 0.20 TCGA-CV-A45Q-01 1 53736707 53736707 C T LRP8 Silent p.K415K 0.22 TCGA-CV-A45Q-01 1 64608352 64608352 C T ROR1 Intron 0.22 TCGA-CV-A45Q-01 1 67292604 67292604 A T WDR78 Silent p.A746A 0.31 TCGA-CV-A45Q-01 1 90058621 90058621 G A LRRC8B 3'UTR 0.26 TCGA-CV-A45Q-01 1 92515905 92515905 G A EPHX4 Silent p.L212L 0.13 TCGA-CV-A45Q-01 1 94343367 94343367 C G DNTTIP2 Missense_Mutation p.D42H 0.39 deleterious(0) possibly_damaging(0.557) TCGA-CV-A45Q-01 1 97278423 97278423 G A PTBP2 Missense_Mutation p.G443R 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Q-01 20 16493547 16493547 G A KIF16B Missense_Mutation p.R124W 0.13 deleterious(0) probably_damaging(1) TCGA-CV-A45Q-01 20 31828126 31828126 G T BPIFA1 Missense_Mutation p.R172S 0.21 tolerated(0.2) benign(0.06) TCGA-CV-A45Q-01 20 32677565 32677565 G A EIF2S2 Nonsense_Mutation p.R325* 0.23 TCGA-CV-A45Q-01 20 33805784 33805784 G C AL121753.1 3'Flank 0.27 TCGA-CV-A45Q-01 20 39978896 39978896 C T LPIN3 Missense_Mutation p.L321F 0.21 tolerated(0.54) benign(0.003) TCGA-CV-A45Q-01 20 42343842 42343842 C G MYBL2 Silent p.L631L 0.28 TCGA-CV-A45Q-01 20 43851824 43851824 A G SEMG2 Silent p.Q517Q 0.31 TCGA-CV-A45Q-01 20 47860397 47860397 G A DDX27 3'UTR 0.20 TCGA-CV-A45Q-01 21 31864135 31864135 G T KRTAP19-3 Silent p.G47G 0.22 TCGA-CV-A45Q-01 21 41725483 41725483 C G DSCAM Missense_Mutation p.E281D 0.19 tolerated(0.24) benign(0.439) TCGA-CV-A45Q-01 22 17264575 17264575 C A XKR3 Missense_Mutation p.R438S 0.60 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-CV-A45Q-01 22 22749559 22749559 C T IGLV7-43 Missense_Mutation p.S28L 0.14 deleterious(0.01) possibly_damaging(0.752) TCGA-CV-A45Q-01 22 22749593 22749593 C T IGLV7-43 Silent p.L39L 0.13 TCGA-CV-A45Q-01 22 30695463 30695463 C T TBC1D10A Silent p.V136V 0.18 TCGA-CV-A45Q-01 22 36708234 36708234 C T MYH9 Missense_Mutation p.E530K 0.25 probably_damaging(0.976) TCGA-CV-A45Q-01 22 41257470 41257470 C G DNAJB7 Missense_Mutation p.D177H 0.24 deleterious(0.02) possibly_damaging(0.819) TCGA-CV-A45Q-01 22 50942864 50942864 C G LMF2 Missense_Mutation p.Q541H 0.32 deleterious(0.04) probably_damaging(0.995) TCGA-CV-A45Q-01 2 106015388 106015388 C T FHL2 5'UTR 0.38 TCGA-CV-A45Q-01 2 110917743 110917743 G A NPHP1 Silent p.L404L 0.34 TCGA-CV-A45Q-01 2 128480908 128480908 G A WDR33 Nonsense_Mutation p.R404* 0.36 TCGA-CV-A45Q-01 2 136561591 136561591 C T LCT Silent p.Q1524Q 0.23 TCGA-CV-A45Q-01 2 138169408 138169408 A G THSD7B Silent p.G975G 0.23 TCGA-CV-A45Q-01 2 149818561 149818561 G C KIF5C Missense_Mutation p.E349Q 0.19 deleterious(0.05) possibly_damaging(0.857) TCGA-CV-A45Q-01 2 166905425 166905425 T C SCN1A Silent p.A333A 0.20 TCGA-CV-A45Q-01 2 167138190 167138190 T G SCN9A Missense_Mutation p.E690D 0.25 tolerated(0.09) possibly_damaging(0.465) TCGA-CV-A45Q-01 2 168107253 168107253 C T XIRP2 Silent p.R3117R 0.26 TCGA-CV-A45Q-01 2 170096157 170096157 C G LRP2 Missense_Mutation p.D1392H 0.29 probably_damaging(0.948) TCGA-CV-A45Q-01 2 170139444 170139444 C G LRP2 Silent p.L370L 0.19 TCGA-CV-A45Q-01 2 171822666 171822666 G A GORASP2 3'UTR 0.19 TCGA-CV-A45Q-01 2 179566974 179566974 T A TTN Splice_Site p.X10145_splice 0.24 TCGA-CV-A45Q-01 2 183623957 183623957 C T DNAJC10 Missense_Mutation p.H690Y 0.24 tolerated(0.12) probably_damaging(0.985) TCGA-CV-A45Q-01 2 196661404 196661404 C T DNAH7 Missense_Mutation p.A3471T 0.32 deleterious(0) probably_damaging(1) TCGA-CV-A45Q-01 2 196837116 196837116 G A DNAH7 Silent p.L636L 0.20 TCGA-CV-A45Q-01 2 204058534 204058534 G C NBEAL1 Missense_Mutation p.R2284T 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Q-01 2 242283205 242283205 G T SEPT2 Missense_Mutation p.L245F 0.29 deleterious(0.02) benign(0.013) TCGA-CV-A45Q-01 2 32865416 32865416 T G TTC27 Missense_Mutation p.I159R 0.31 tolerated(0.34) benign(0.139) TCGA-CV-A45Q-01 2 68691491 68691491 C T FBXO48 Silent p.L106L 0.23 TCGA-CV-A45Q-01 2 68691500 68691500 C T FBXO48 Silent p.V103V 0.21 TCGA-CV-A45Q-01 2 74425844 74425844 C T MTHFD2 Missense_Mutation p.R26C 0.58 tolerated(0.18) benign(0.001) TCGA-CV-A45Q-01 2 75426063 75426063 C T TACR1 5'UTR 0.28 TCGA-CV-A45Q-01 2 76975852 76975852 G A LRRTM4 Missense_Mutation p.P581L 0.30 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-CV-A45Q-01 2 88423941 88423941 C T FABP1 Intron 0.24 TCGA-CV-A45Q-01 3 10146360 10146360 G C FANCD2OS Missense_Mutation p.F33L 0.21 tolerated(0.69) benign(0.002) TCGA-CV-A45Q-01 3 119886327 119886327 G C GPR156 Nonsense_Mutation p.S666* 0.13 TCGA-CV-A45Q-01 3 124998092 124998092 C A ZNF148 Splice_Site p.X154_splice 0.13 TCGA-CV-A45Q-01 3 126916103 126916103 C T C3orf56 Missense_Mutation p.S192F 0.20 deleterious(0) possibly_damaging(0.683) TCGA-CV-A45Q-01 3 13659771 13659771 G T FBLN2 Missense_Mutation p.R642L 0.29 tolerated(0.68) benign(0.037) TCGA-CV-A45Q-01 3 139067062 139067062 G C MRPS22 Missense_Mutation p.E134Q 0.26 tolerated(0.11) probably_damaging(0.923) TCGA-CV-A45Q-01 3 14862606 14862606 T C FGD5 Silent p.S676S 0.22 TCGA-CV-A45Q-01 3 151095916 151095916 T A MED12L Nonsense_Mutation p.L1443* 0.28 TCGA-CV-A45Q-01 3 156241659 156241659 G A KCNAB1 Missense_Mutation p.R335K 0.26 tolerated(0.26) benign(0.006) TCGA-CV-A45Q-01 3 164733747 164733753 ATAATGT - SI Frame_Shift_Del p.Y1292Lfs*48 0.29 TCGA-CV-A45Q-01 3 164741468 164741468 C T SI Missense_Mutation p.A997T 0.22 tolerated(0.12) benign(0.021) TCGA-CV-A45Q-01 3 169496746 169496746 C G MYNN Missense_Mutation p.R153G 0.30 tolerated(0.12) benign(0.176) TCGA-CV-A45Q-01 3 183059382 183059382 G A MCF2L2 Silent p.I104I 0.27 TCGA-CV-A45Q-01 3 184008411 184008411 C T ECE2 Silent p.P692P 0.18 TCGA-CV-A45Q-01 3 188590551 188590551 G A LPP Silent p.E570E 0.31 TCGA-CV-A45Q-01 3 193120436 193120436 G T ATP13A4 3'UTR 0.17 TCGA-CV-A45Q-01 3 193120568 193120568 T A ATP13A4 Missense_Mutation p.Q1155L 0.13 deleterious(0.03) benign(0.297) TCGA-CV-A45Q-01 3 195452896 195452896 C G MUC20 Silent p.V474V 0.14 TCGA-CV-A45Q-01 3 196650417 196650417 G A SENP5 Missense_Mutation p.V673I 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-CV-A45Q-01 3 3186340 3186340 G T TRNT1 Missense_Mutation p.G185V 0.32 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Q-01 3 40251521 40251521 G C MYRIP Missense_Mutation p.E614D 0.25 tolerated(0.07) benign(0.071) TCGA-CV-A45Q-01 3 47537548 47537548 C T ELP6 3'UTR 0.18 TCGA-CV-A45Q-01 3 49053203 49053203 C G WDR6 3'UTR 0.23 TCGA-CV-A45Q-01 3 52474988 52474988 G A SEMA3G Missense_Mutation p.P297L 0.32 deleterious(0.01) probably_damaging(1) TCGA-CV-A45Q-01 3 52877740 52877740 G C TMEM110 Silent p.V205V 0.30 TCGA-CV-A45Q-01 3 53837488 53837488 G A CACNA1D Missense_Mutation p.R1845Q 0.26 tolerated_low_confidence(0.15) benign(0.008) TCGA-CV-A45Q-01 3 55984528 55984528 C G ERC2 Missense_Mutation p.K776N 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-CV-A45Q-01 3 58133998 58133998 G A FLNB Missense_Mutation p.E1963K 0.36 deleterious(0.02) probably_damaging(0.994) TCGA-CV-A45Q-01 3 93782054 93782054 G A DHFRL1 5'UTR 0.25 TCGA-CV-A45Q-01 4 123541999 123541999 C A IL21 Missense_Mutation p.L56F 0.39 deleterious(0.04) probably_damaging(0.996) TCGA-CV-A45Q-01 4 125592865 125592865 C G ANKRD50 Missense_Mutation p.E523Q 0.24 tolerated(0.19) probably_damaging(0.959) TCGA-CV-A45Q-01 4 13543912 13543912 C T NKX3-2 Missense_Mutation p.R236H 0.36 deleterious(0) probably_damaging(1) TCGA-CV-A45Q-01 4 144460010 144460010 T C SMARCA5 Silent p.G563G 0.32 TCGA-CV-A45Q-01 4 159092224 159092224 G C FAM198B Missense_Mutation p.L102V 0.18 tolerated(0.36) possibly_damaging(0.567) TCGA-CV-A45Q-01 4 186544294 186544294 G T SORBS2 Silent p.R859R 0.27 TCGA-CV-A45Q-01 4 187542861 187542861 G A FAT1 Nonsense_Mutation p.R1627* 0.21 TCGA-CV-A45Q-01 4 187628110 187628110 G A FAT1 Nonsense_Mutation p.Q958* 0.26 TCGA-CV-A45Q-01 4 2306243 2306243 C T ZFYVE28 Silent p.E608E 0.15 TCGA-CV-A45Q-01 4 30724513 30724513 C G PCDH7 Missense_Mutation p.S490W 0.24 deleterious(0) probably_damaging(0.989) TCGA-CV-A45Q-01 4 55133465 55133465 G A PDGFRA Missense_Mutation p.G257S 0.34 tolerated(0.7) probably_damaging(0.933) TCGA-CV-A45Q-01 4 66361138 66361138 C G EPHA5 Missense_Mutation p.R345T 0.22 tolerated(0.15) benign(0) TCGA-CV-A45Q-01 4 75937986 75937986 C T PARM1 Missense_Mutation p.A132V 0.18 tolerated(0.23) benign(0.025) TCGA-CV-A45Q-01 4 84391361 84391361 T G FAM175A Missense_Mutation p.Q157H 0.17 tolerated(0.19) possibly_damaging(0.615) TCGA-CV-A45Q-01 4 88534203 88534203 G C DSPP Missense_Mutation p.D289H 0.35 probably_damaging(0.987) TCGA-CV-A45Q-01 5 121187842 121187842 G A FTMT Missense_Mutation p.A62T 0.29 tolerated(1) benign(0.01) TCGA-CV-A45Q-01 5 137654985 137654985 G A CDC25C Missense_Mutation p.P180S 0.26 tolerated(0.1) benign(0.094) TCGA-CV-A45Q-01 5 139508127 139508127 C T IGIP Silent p.V22V 0.22 TCGA-CV-A45Q-01 5 140564494 140564494 C A PCDHB16 3'UTR 0.22 TCGA-CV-A45Q-01 5 140870269 140870269 C T PCDHGC5 Missense_Mutation p.R488C 0.19 tolerated(0.06) possibly_damaging(0.837) TCGA-CV-A45Q-01 5 148577791 148577791 G A ABLIM3 Missense_Mutation p.C54Y 0.35 deleterious(0) probably_damaging(0.988) TCGA-CV-A45Q-01 5 152873564 152873564 G A GRIA1 Silent p.P63P 0.20 TCGA-CV-A45Q-01 5 154395530 154395530 C T KIF4B Missense_Mutation p.T704M 0.21 tolerated(0.24) possibly_damaging(0.545) TCGA-CV-A45Q-01 5 159821580 159821580 T G C5orf54 Silent p.P306P 0.20 TCGA-CV-A45Q-01 5 178506330 178506330 G A ZNF354C Silent p.P299P 0.25 TCGA-CV-A45Q-01 5 180486626 180486626 G A BTNL9 Missense_Mutation p.G458R 0.22 deleterious(0) probably_damaging(1) TCGA-CV-A45Q-01 5 38886310 38886310 A G OSMR Intron 0.21 TCGA-CV-A45Q-01 5 41000406 41000406 C A MROH2B Missense_Mutation p.Q1466H 0.37 deleterious(0.03) benign(0.02) TCGA-CV-A45Q-01 5 41033196 41033196 C T MROH2B Missense_Mutation p.E770K 0.31 tolerated(0.53) benign(0.007) TCGA-CV-A45Q-01 5 475148 475148 G A SLC9A3 Missense_Mutation p.S784L 0.24 deleterious(0) probably_damaging(0.951) TCGA-CV-A45Q-01 5 55237392 55237392 A G IL6ST Missense_Mutation p.Y759H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Q-01 5 58652626 58652626 G A PDE4D Intron 0.24 TCGA-CV-A45Q-01 5 76028613 76028613 C T F2R Missense_Mutation p.A188V 0.35 deleterious(0) possibly_damaging(0.843) TCGA-CV-A45Q-01 5 82815925 82815925 C G VCAN Silent p.V600V 0.32 TCGA-CV-A45Q-01 5 82816280 82816280 G C VCAN Missense_Mutation p.E719Q 0.36 deleterious(0.01) possibly_damaging(0.764) TCGA-CV-A45Q-01 6 152265497 152265497 G T ESR1 Missense_Mutation p.S317I 0.23 tolerated(0.39) benign(0.017) TCGA-CV-A45Q-01 6 152461273 152461273 G A SYNE1 Missense_Mutation p.L8424F 0.26 benign(0.082) TCGA-CV-A45Q-01 6 160958884 160958884 C T LPA Intron 0.27 TCGA-CV-A45Q-01 6 28228044 28228044 G A NKAPL Missense_Mutation p.A299T 0.23 deleterious(0) probably_damaging(0.992) TCGA-CV-A45Q-01 6 29691994 29691994 G C HLA-F Missense_Mutation p.D127H 0.14 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-CV-A45Q-01 6 30653862 30653862 G T PPP1R18 5'UTR 0.23 TCGA-CV-A45Q-01 6 33380521 33380521 G C PHF1 Missense_Mutation p.E96D 0.17 tolerated(0.34) benign(0.115) TCGA-CV-A45Q-01 6 43014265 43014265 G C CUL7 Silent p.L908L 0.24 TCGA-CV-A45Q-01 6 43475269 43475269 C T LRRC73 Missense_Mutation p.D269N 0.20 tolerated_low_confidence(0.47) benign(0) TCGA-CV-A45Q-01 6 52622709 52622709 G A GSTA2 Missense_Mutation p.R13W 0.34 deleterious(0) possibly_damaging(0.689) TCGA-CV-A45Q-01 6 63990433 63990433 C T LGSN Silent p.G341G 0.19 TCGA-CV-A45Q-01 6 64415949 64415949 C G PHF3 Missense_Mutation p.S1133C 0.40 deleterious(0) probably_damaging(0.979) TCGA-CV-A45Q-01 6 73016982 73016982 G A RIMS1 Missense_Mutation p.R1291Q 0.27 deleterious(0.02) benign(0.02) TCGA-CV-A45Q-01 7 100350536 100350536 C T ZAN Silent p.I936I 0.25 TCGA-CV-A45Q-01 7 103029457 103029457 C G SLC26A5 Missense_Mutation p.Q504H 0.25 deleterious(0) probably_damaging(0.993) TCGA-CV-A45Q-01 7 107626633 107626633 G C LAMB1 Nonsense_Mutation p.S200* 0.24 TCGA-CV-A45Q-01 7 113559067 113559067 C T PPP1R3A 5'UTR 0.25 TCGA-CV-A45Q-01 7 131925848 131925848 A G PLXNA4 Silent p.C527C 0.33 TCGA-CV-A45Q-01 7 143956598 143956598 C T OR2A7 Missense_Mutation p.G42R 0.09 deleterious(0.04) benign(0.334) TCGA-CV-A45Q-01 7 146818173 146818173 G A CNTNAP2 Missense_Mutation p.R286Q 0.26 tolerated(0.19) possibly_damaging(0.487) TCGA-CV-A45Q-01 7 148496405 148496405 G A CUL1 Silent p.L725L 0.33 TCGA-CV-A45Q-01 7 150730891 150730891 G T ABCB8 Nonsense_Mutation p.E99* 0.23 TCGA-CV-A45Q-01 7 5105180 5105180 A - RBAK Frame_Shift_Del p.Q698Rfs*9 0.26 TCGA-CV-A45Q-01 7 64838831 64838831 G T ZNF92 5'UTR 0.28 TCGA-CV-A45Q-01 7 66459213 66459213 C G SBDS Missense_Mutation p.E82Q 0.23 tolerated(0.05) benign(0.356) TCGA-CV-A45Q-01 7 6836416 6836416 C G RSPH10B2 Intron 0.22 TCGA-CV-A45Q-01 7 72413639 72413639 C G POM121 Missense_Mutation p.S771W 0.25 deleterious(0.04) probably_damaging(0.941) TCGA-CV-A45Q-01 7 75145083 75145083 C T Y_RNA 5'Flank 0.25 TCGA-CV-A45Q-01 7 82581589 82581589 C G PCLO Missense_Mutation p.D2894H 0.30 unknown(0) TCGA-CV-A45Q-01 7 87180046 87180046 C G ABCB1 Missense_Mutation p.D370H 0.31 deleterious(0) benign(0.398) TCGA-CV-A45Q-01 7 97619416 97619416 T - OCM2 Frame_Shift_Del p.M1? 0.19 TCGA-CV-A45Q-01 8 103359282 103359282 C T UBR5 Missense_Mutation p.G142E 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-CV-A45Q-01 8 103851015 103851015 C A AZIN1 Nonsense_Mutation p.E136* 0.27 TCGA-CV-A45Q-01 8 140631260 140631260 C T KCNK9 Silent p.L122L 0.13 TCGA-CV-A45Q-01 8 24775313 24775313 G A NEFM Missense_Mutation p.E649K 0.19 tolerated(1) benign(0.003) TCGA-CV-A45Q-01 8 26366052 26366052 C T PNMA2 Missense_Mutation p.D74N 0.15 tolerated(0.57) benign(0.005) TCGA-CV-A45Q-01 8 30924631 30924631 G - WRN Frame_Shift_Del p.R196Pfs*32 0.24 TCGA-CV-A45Q-01 8 89180146 89180146 C T MMP16 Missense_Mutation p.R154H 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A45Q-01 9 102677524 102677524 G A STX17 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-CV-A45Q-01 9 137779287 137779287 G A FCN2 3'UTR 0.24 TCGA-CV-A45Q-01 9 139108558 139108558 C T QSOX2 Missense_Mutation p.G366E 0.17 deleterious(0) probably_damaging(0.959) TCGA-CV-A45Q-01 9 139301870 139301870 G A SDCCAG3 Silent p.T182T 0.25 TCGA-CV-A45Q-01 9 2192726 2192726 C T SMARCA2 Missense_Mutation p.T1587M 0.21 benign(0.194) TCGA-CV-A45Q-01 9 32784622 32784622 G T TMEM215 Missense_Mutation p.Q147H 0.11 deleterious(0.05) benign(0.444) TCGA-CV-A45Q-01 9 34996641 34996641 C G DNAJB5 Silent p.L311L 0.13 TCGA-CV-A45Q-01 9 35810898 35810898 C T SPAG8 Missense_Mutation p.V341I 0.16 tolerated(0.41) benign(0.026) TCGA-CV-A45Q-01 9 35842634 35842634 C T TMEM8B Missense_Mutation p.R67C 0.30 tolerated(0.12) probably_damaging(0.925) TCGA-CV-A45Q-01 9 37441150 37441150 C G ZBTB5 Missense_Mutation p.E467Q 0.47 tolerated_low_confidence(0.26) benign(0.009) TCGA-CV-A45Q-01 9 5823980 5823980 G A ERMP1 Nonsense_Mutation p.Q264* 0.12 TCGA-CV-A45Q-01 9 5924783 5924783 C T KIAA2026 Missense_Mutation p.R854K 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-CV-A45Q-01 9 95484948 95484948 C G BICD2 Missense_Mutation p.R199T 0.47 deleterious(0) benign(0.363) TCGA-CV-A45Q-01 X 102528878 102528878 T G TCEAL5 Missense_Mutation p.Y205S 0.36 deleterious(0) probably_damaging(0.939) TCGA-CV-A45Q-01 X 102978844 102978844 G A GLRA4 Silent p.L173L 0.57 TCGA-CV-A45Q-01 X 110507164 110507164 T C CAPN6 Translation_Start_Site p.M1? 0.43 deleterious(0.01) benign(0.067) TCGA-CV-A45Q-01 X 118370343 118370343 T C PGRMC1 Missense_Mutation p.V6A 0.41 tolerated_low_confidence(0.34) benign(0.001) TCGA-CV-A45Q-01 X 119005698 119005698 C T RNF113A 5'UTR 0.43 TCGA-CV-A45Q-01 X 135730362 135730362 C G CD40LG 5'UTR 0.18 TCGA-CV-A45Q-01 X 153059830 153059830 C G SSR4 5'UTR 0.29 TCGA-CV-A45Q-01 X 37526544 37526544 A G LANCL3 Missense_Mutation p.Y302C 0.50 deleterious(0) probably_damaging(0.992) TCGA-CV-A45Q-01 X 44910975 44910975 G T KDM6A Nonsense_Mutation p.E226* 0.27 TCGA-CV-A45Q-01 X 48325429 48325429 G A SLC38A5 Silent p.F55F 0.37 TCGA-CV-A45Q-01 X 62570773 62570773 A C SPIN4 5'UTR 0.50 TCGA-CV-A45Q-01 X 70523745 70523745 A C ITGB1BP2 Missense_Mutation p.H208P 0.37 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Q-01 X 73042146 73042146 G C XIST RNA 0.33 TCGA-CV-A45Q-01 X 77218256 77218256 A C ATP7A Intron 0.35 TCGA-CV-A45Q-01 X 77378330 77378330 A C PGK1 Splice_Site p.X214_splice 0.38 TCGA-CV-A45Q-01 X 92964763 92964763 C G FAM133A Missense_Mutation p.S115R 0.36 deleterious_low_confidence(0) unknown(0) TCGA-CV-A45R-01 10 117061462 117061462 C T ATRNL1 Silent p.C909C 0.20 TCGA-CV-A45R-01 11 123908787 123908787 C A OR10G7 Missense_Mutation p.A308S 0.37 tolerated(1) benign(0) TCGA-CV-A45R-01 11 18497038 18497038 G C LDHAL6A Missense_Mutation p.W148C 0.18 deleterious(0) probably_damaging(0.996) TCGA-CV-A45R-01 11 57114618 57114618 A G P2RX3 Missense_Mutation p.K95R 0.22 tolerated(0.07) benign(0.364) TCGA-CV-A45R-01 11 66329094 66329094 G A CTSF 3'Flank 0.58 TCGA-CV-A45R-01 11 69933970 69933970 C T ANO1 Missense_Mutation p.S74L 0.12 tolerated(0.08) benign(0.283) TCGA-CV-A45R-01 12 22068678 22068678 G A ABCC9 Missense_Mutation p.A247V 0.40 tolerated(0.51) benign(0.003) TCGA-CV-A45R-01 12 52100401 52100401 G A SCN8A Missense_Mutation p.E513K 0.14 tolerated(0.11) benign(0.234) TCGA-CV-A45R-01 12 58162916 58162916 C T METTL1 Missense_Mutation p.G232R 0.15 tolerated(0.55) benign(0.003) TCGA-CV-A45R-01 12 62104042 62104042 A G FAM19A2 3'UTR 0.23 TCGA-CV-A45R-01 12 81112670 81112670 G A MYF5 Missense_Mutation p.S203N 0.10 deleterious(0) probably_damaging(0.998) TCGA-CV-A45R-01 12 81545808 81545808 G T ACSS3 Missense_Mutation p.W344L 0.36 deleterious(0) probably_damaging(0.986) TCGA-CV-A45R-01 13 84453963 84453963 C T SLITRK1 Silent p.T560T 0.50 TCGA-CV-A45R-01 14 22102277 22102277 C T OR10G2 Missense_Mutation p.R241Q 0.35 deleterious(0.02) benign(0.168) TCGA-CV-A45R-01 14 42360709 42360709 C T LRFN5 Silent p.L548L 0.30 TCGA-CV-A45R-01 14 76045896 76045896 T A FLVCR2 Missense_Mutation p.I194N 0.35 deleterious(0) probably_damaging(0.994) TCGA-CV-A45R-01 14 89124669 89124669 T A EML5 Missense_Mutation p.T1247S 0.20 tolerated(0.91) benign(0.006) TCGA-CV-A45R-01 15 100211631 100211631 A T MEF2A Intron 0.14 TCGA-CV-A45R-01 15 29398898 29398898 C A APBA2 Missense_Mutation p.A598D 0.16 deleterious(0) probably_damaging(0.985) TCGA-CV-A45R-01 15 71276586 71276586 G C LRRC49 Missense_Mutation p.E392Q 0.10 tolerated(0.06) possibly_damaging(0.602) TCGA-CV-A45R-01 16 21995685 21995685 G A PDZD9 Missense_Mutation p.S173F 0.18 deleterious(0) probably_damaging(0.996) TCGA-CV-A45R-01 16 25258204 25258215 GGTTTATCAGTG - ZKSCAN2 In_Frame_Del p.T435_P438del 0.17 TCGA-CV-A45R-01 16 28145177 28145177 G A XPO6 Silent p.H507H 0.20 TCGA-CV-A45R-01 16 2882220 2882220 G C ZG16B 3'UTR 0.05 TCGA-CV-A45R-01 16 30764756 30764756 A G PHKG2 Missense_Mutation p.H145R 0.31 deleterious(0) possibly_damaging(0.578) TCGA-CV-A45R-01 16 69963428 69963428 C T WWP2 Nonsense_Mutation p.Q438* 0.23 TCGA-CV-A45R-01 16 71823313 71823313 G A AP1G1 Nonsense_Mutation p.R24* 0.16 TCGA-CV-A45R-01 16 76572189 76572189 G C CNTNAP4 Missense_Mutation p.V985L 0.17 tolerated(0.13) benign(0.074) TCGA-CV-A45R-01 16 81214898 81214898 G A PKD1L2 5'UTR 0.27 TCGA-CV-A45R-01 16 84271067 84271067 C T KCNG4 Missense_Mutation p.G9S 0.35 tolerated_low_confidence(0.17) benign(0.011) TCGA-CV-A45R-01 17 1538598 1538598 C T SCARF1 Silent p.A649A 0.09 TCGA-CV-A45R-01 17 19645912 19645912 C T ALDH3A1 Silent p.L142L 0.16 TCGA-CV-A45R-01 17 3493397 3493397 C A SHPK Nonsense_Mutation p.E250* 0.57 TCGA-CV-A45R-01 17 36861874 36861874 G A MLLT6 5'UTR 0.40 TCGA-CV-A45R-01 17 56772397 56772397 A T RAD51C Missense_Mutation p.K84M 0.28 deleterious(0.05) possibly_damaging(0.726) TCGA-CV-A45R-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.63 deleterious(0.03) probably_damaging(1) TCGA-CV-A45R-01 17 77755584 77755584 G A CBX2 Missense_Mutation p.R91Q 0.14 tolerated(0.21) possibly_damaging(0.876) TCGA-CV-A45R-01 18 29055668 29055668 C A DSG3 Silent p.I815I 0.37 TCGA-CV-A45R-01 19 18391914 18391914 C T JUND Silent p.K127K 0.22 TCGA-CV-A45R-01 19 46120937 46120937 C T EML2 Missense_Mutation p.G626S 0.18 tolerated(0.19) benign(0.036) TCGA-CV-A45R-01 19 4694749 4694749 G A DPP9 Silent p.F480F 0.21 TCGA-CV-A45R-01 19 50185257 50185257 G A PRMT1 Missense_Mutation p.V95I 0.10 tolerated(0.1) benign(0.247) TCGA-CV-A45R-01 19 55255396 55255396 C T KIR2DL3 Missense_Mutation p.P175L 0.19 tolerated(0.25) benign(0.038) TCGA-CV-A45R-01 19 55378031 55378031 G A KIR3DL2 Missense_Mutation p.V405I 0.18 tolerated(0.56) benign(0.252) TCGA-CV-A45R-01 19 7527146 7527146 G A ARHGEF18 Missense_Mutation p.R666Q 0.20 tolerated(0.21) benign(0.042) TCGA-CV-A45R-01 1 120168620 120168620 T G ZNF697 Missense_Mutation p.E35A 0.31 deleterious_low_confidence(0.01) benign(0.05) TCGA-CV-A45R-01 1 144994956 144994956 C T PDE4DIP 5'UTR 0.07 TCGA-CV-A45R-01 1 16356265 16356265 G T CLCNKA Missense_Mutation p.A423S 0.09 tolerated(0.16) probably_damaging(0.996) TCGA-CV-A45R-01 1 172558867 172558867 C G SUCO Missense_Mutation p.L876V 0.32 tolerated(0.05) benign(0.081) TCGA-CV-A45R-01 1 214171118 214171118 G A PROX1 Missense_Mutation p.D414N 0.33 tolerated(0.06) probably_damaging(0.993) TCGA-CV-A45R-01 1 220088829 220088829 G C SLC30A10 Missense_Mutation p.Q474E 0.26 deleterious(0.02) benign(0.156) TCGA-CV-A45R-01 1 228109449 228109449 C T WNT9A Missense_Mutation p.V290M 0.17 deleterious(0.01) benign(0.075) TCGA-CV-A45R-01 1 228495023 228495023 G A OBSCN Missense_Mutation p.R5043Q 0.14 possibly_damaging(0.857) TCGA-CV-A45R-01 1 23695750 23695751 - C C1orf213 5'UTR 0.25 TCGA-CV-A45R-01 1 248020626 248020626 G A TRIM58 Silent p.P26P 0.15 TCGA-CV-A45R-01 1 26510920 26510920 G A CNKSR1 Silent p.L343L 0.40 TCGA-CV-A45R-01 1 27059232 27059232 A G ARID1A Silent p.G623G 0.27 TCGA-CV-A45R-01 1 54428009 54428009 G A LRRC42 Missense_Mutation p.G285D 0.26 tolerated(0.11) benign(0.059) TCGA-CV-A45R-01 20 18440913 18440913 G T DZANK1 Silent p.G49G 0.27 TCGA-CV-A45R-01 20 57768620 57768620 A G ZNF831 Missense_Mutation p.Q849R 0.30 tolerated(0.11) benign(0.297) TCGA-CV-A45R-01 20 61431076 61431076 C G MRGBP 3'UTR 0.15 TCGA-CV-A45R-01 20 62562306 62562306 G A DNAJC5 Missense_Mutation p.E142K 0.09 tolerated(0.19) benign(0.005) TCGA-CV-A45R-01 21 41385129 41385129 C T DSCAM Silent p.T1957T 0.30 TCGA-CV-A45R-01 21 42720565 42720565 G T FAM3B Nonsense_Mutation p.E178* 0.21 TCGA-CV-A45R-01 21 43164073 43164073 C T RIPK4 Silent p.S388S 0.26 TCGA-CV-A45R-01 21 47965129 47965129 C T DIP2A Silent p.S752S 0.13 TCGA-CV-A45R-01 22 26688728 26688728 T C SEZ6L Missense_Mutation p.S151P 0.12 tolerated_low_confidence(0.13) benign(0.002) TCGA-CV-A45R-01 22 38221104 38221104 C T GALR3 Missense_Mutation p.A245V 0.19 deleterious(0) possibly_damaging(0.617) TCGA-CV-A45R-01 22 38822960 38822960 G A KCNJ4 Missense_Mutation p.A393V 0.37 tolerated(0.26) benign(0.007) TCGA-CV-A45R-01 22 50655514 50655514 C T SELO Missense_Mutation p.A601V 0.15 deleterious(0.03) probably_damaging(0.969) TCGA-CV-A45R-01 22 50728802 50728802 G A PLXNB2 Missense_Mutation p.P71L 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A45R-01 2 105858983 105858983 G A GPR45 Missense_Mutation p.R223H 0.39 deleterious(0) probably_damaging(0.918) TCGA-CV-A45R-01 2 116497323 116497323 C G DPP10 Missense_Mutation p.L240V 0.18 deleterious(0) probably_damaging(0.969) TCGA-CV-A45R-01 2 231943412 231943412 A G PSMD1 Missense_Mutation p.I371V 0.42 tolerated(0.17) benign(0.017) TCGA-CV-A45R-01 3 130287049 130287049 G A COL6A6 Missense_Mutation p.D668N 0.11 tolerated(0.26) benign(0.237) TCGA-CV-A45R-01 3 140785418 140785418 G A SPSB4 Missense_Mutation p.G158S 0.18 tolerated(0.38) benign(0.014) TCGA-CV-A45R-01 3 148459480 148459480 A G AGTR1 Missense_Mutation p.K220E 0.11 deleterious(0.01) possibly_damaging(0.844) TCGA-CV-A45R-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.43 deleterious(0.02) probably_damaging(0.984) TCGA-CV-A45R-01 3 2928746 2928746 C T CNTN4 Nonsense_Mutation p.R260* 0.25 TCGA-CV-A45R-01 4 103500169 103500169 G A NFKB1 Missense_Mutation p.V235M 0.22 deleterious(0) probably_damaging(0.994) TCGA-CV-A45R-01 4 111397844 111397844 C T ENPEP Nonsense_Mutation p.R92* 0.12 TCGA-CV-A45R-01 4 134084326 134084326 C T PCDH10 Missense_Mutation p.R998W 0.05 deleterious(0.02) possibly_damaging(0.855) TCGA-CV-A45R-01 4 153247168 153247168 T C FBXW7 Missense_Mutation p.Y545C 0.43 deleterious(0) probably_damaging(1) TCGA-CV-A45R-01 4 187517847 187517847 C T FAT1 Missense_Mutation p.E4283K 0.33 probably_damaging(0.998) TCGA-CV-A45R-01 4 20493433 20493433 C T SLIT2 Silent p.A275A 0.29 TCGA-CV-A45R-01 4 48523169 48523169 C T FRYL Missense_Mutation p.E2529K 0.12 tolerated(0.31) benign(0.002) TCGA-CV-A45R-01 4 6864427 6864427 C G KIAA0232 Missense_Mutation p.T773S 0.28 tolerated_low_confidence(0.46) benign(0.007) TCGA-CV-A45R-01 4 79328996 79328996 G C FRAS1 Splice_Site p.X1436_splice 0.22 TCGA-CV-A45R-01 4 85708805 85708805 G A WDFY3 Missense_Mutation p.T1244M 0.25 deleterious(0.01) benign(0.34) TCGA-CV-A45R-01 5 13717547 13717547 A G DNAH5 Silent p.T4194T 0.12 TCGA-CV-A45R-01 5 154271032 154271032 C T GEMIN5 Missense_Mutation p.R1344K 0.31 tolerated_low_confidence(0.97) benign(0.001) TCGA-CV-A45R-01 6 144508672 144508672 G A STX11 3'UTR 0.20 TCGA-CV-A45R-01 6 146350552 146350552 G A GRM1 5'UTR 0.25 TCGA-CV-A45R-01 6 152694195 152694195 G A SYNE1 Missense_Mutation p.H3162Y 0.25 possibly_damaging(0.649) TCGA-CV-A45R-01 6 158066812 158066812 G A ZDHHC14 Missense_Mutation p.V266I 0.12 tolerated(0.23) benign(0.252) TCGA-CV-A45R-01 6 33740486 33740486 C T LEMD2 Silent p.T477T 0.12 TCGA-CV-A45R-01 6 56006598 56006598 C T COL21A1 Silent p.G509G 0.32 TCGA-CV-A45R-01 6 87725443 87725443 G A HTR1E Missense_Mutation p.A131T 0.10 tolerated(0.24) probably_damaging(0.97) TCGA-CV-A45R-01 7 5417607 5417607 C T TNRC18 Missense_Mutation p.R734Q 0.29 probably_damaging(0.97) TCGA-CV-A45R-01 7 56045863 56045863 T C GBAS Missense_Mutation p.L46P 0.20 deleterious(0.04) probably_damaging(0.91) TCGA-CV-A45R-01 7 73123401 73123401 G A STX1A Missense_Mutation p.R28C 0.31 tolerated(0.05) possibly_damaging(0.492) TCGA-CV-A45R-01 8 39080613 39080613 G A ADAM32 Missense_Mutation p.A461T 0.55 tolerated(0.72) benign(0.196) TCGA-CV-A45R-01 8 41122968 41122968 G A SFRP1 Silent p.G221G 0.21 TCGA-CV-A45R-01 8 42587393 42587393 G A CHRNB3 Missense_Mutation p.V315M 0.10 deleterious(0) probably_damaging(0.973) TCGA-CV-A45R-01 8 48888359 48888359 C T MCM4 Missense_Mutation p.A817V 0.29 tolerated(0.15) benign(0.027) TCGA-CV-A45R-01 8 93029456 93029456 G A RUNX1T1 Missense_Mutation p.T86M 0.30 deleterious(0) possibly_damaging(0.88) TCGA-CV-A45R-01 9 119028234 119028234 G T PAPPA Missense_Mutation p.S944I 0.41 deleterious(0.01) benign(0.047) TCGA-CV-A45R-01 9 130027240 130027240 G A GARNL3 Silent p.S28S 0.16 TCGA-CV-A45R-01 9 21971124 21971125 GA - CDKN2A Frame_Shift_Del p.L78Hfs*41 0.45 TCGA-CV-A45R-01 9 2648222 2648222 C T VLDLR Missense_Mutation p.R613C 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A45R-01 9 84534433 84534433 C T SPATA31D5P RNA 0.19 TCGA-CV-A45R-01 X 23411378 23411378 G A PTCHD1 Silent p.G581G 0.25 TCGA-CV-A45T-01 10 88769021 88769021 C T RP11-96C23.10 3'Flank 0.08 TCGA-CV-A45T-01 13 101720363 101720363 G A NALCN Silent p.S1451S 0.18 TCGA-CV-A45T-01 14 61115498 61115498 C T SIX1 Missense_Mutation p.G137D 0.07 deleterious(0.02) benign(0.083) TCGA-CV-A45T-01 16 30531237 30531237 C T ITGAL Silent p.S1096S 0.06 TCGA-CV-A45T-01 19 1080060 1080060 G A HMHA1 Missense_Mutation p.R565Q 0.08 tolerated(0.09) possibly_damaging(0.696) TCGA-CV-A45T-01 19 49933867 49933867 G A SLC17A7 Missense_Mutation p.P531L 0.18 tolerated(0.6) benign(0.039) TCGA-CV-A45T-01 19 50912134 50912134 G A POLD1 Missense_Mutation p.R623Q 0.09 tolerated(0.68) benign(0.01) TCGA-CV-A45T-01 1 185089048 185089048 T C TRMT1L 3'UTR 0.19 TCGA-CV-A45T-01 1 47173617 47173617 C G EFCAB14 Missense_Mutation p.L147F 0.09 deleterious(0.04) probably_damaging(1) TCGA-CV-A45T-01 1 67787343 67787343 C T IL12RB2 Silent p.S45S 0.14 TCGA-CV-A45T-01 22 36591424 36591424 G A APOL4 Missense_Mutation p.H51Y 0.10 tolerated(0.14) benign(0.015) TCGA-CV-A45T-01 5 140229428 140229428 G A PCDHA9 Missense_Mutation p.D450N 0.06 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-CV-A45T-01 5 42689050 42689050 A G GHR Silent p.S65S 0.07 TCGA-CV-A45T-01 6 31600586 31600586 A T PRRC2A Missense_Mutation p.D1379V 0.08 unknown(0) TCGA-CV-A45T-01 7 77212909 77212909 G A PTPN12 Missense_Mutation p.G108E 0.11 deleterious(0) probably_damaging(0.924) TCGA-CV-A45T-01 8 55540689 55540689 C G RP1 Missense_Mutation p.S1416C 0.10 deleterious(0.01) possibly_damaging(0.847) TCGA-CV-A45T-01 9 132980238 132980238 G C NCS1 Missense_Mutation p.D73H 0.08 deleterious(0) probably_damaging(1) TCGA-CV-A45U-01 10 114063023 114063023 G A TECTB Missense_Mutation p.V315I 0.57 tolerated_low_confidence(0.63) benign(0.001) TCGA-CV-A45U-01 10 17168789 17168789 G T CUBN Missense_Mutation p.L120I 0.15 deleterious(0.03) benign(0.248) TCGA-CV-A45U-01 10 46962018 46962018 C G SYT15 Missense_Mutation p.K406N 0.22 deleterious(0) probably_damaging(0.917) TCGA-CV-A45U-01 10 46962030 46962030 G A SYT15 Silent p.L402L 0.13 TCGA-CV-A45U-01 10 91483766 91483766 G A KIF20B Missense_Mutation p.E590K 0.10 deleterious(0) probably_damaging(0.991) TCGA-CV-A45U-01 10 91518595 91518595 G A KIF20B Missense_Mutation p.E1506K 0.50 deleterious(0) probably_damaging(0.981) TCGA-CV-A45U-01 10 91528090 91528090 C G KIF20B Missense_Mutation p.T1638S 0.21 tolerated(0.58) benign(0.015) TCGA-CV-A45U-01 10 99619295 99619295 C T GOLGA7B Silent p.T31T 0.19 TCGA-CV-A45U-01 11 10546740 10546740 T A RNF141 Missense_Mutation p.R145W 0.11 deleterious(0) probably_damaging(0.959) TCGA-CV-A45U-01 11 116692567 116692567 C T APOA4 Silent p.V69V 0.30 TCGA-CV-A45U-01 11 116692572 116692572 C T APOA4 Missense_Mutation p.E68K 0.31 tolerated(0.43) benign(0.048) TCGA-CV-A45U-01 11 118253482 118253482 G T UBE4A Nonsense_Mutation p.E737* 0.14 TCGA-CV-A45U-01 11 122930906 122930906 G T HSPA8 Missense_Mutation p.A161D 0.15 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-CV-A45U-01 11 1272899 1272899 G A MUC5B Missense_Mutation p.R4930K 0.17 unknown(0) TCGA-CV-A45U-01 11 129785675 129785675 C A PRDM10 Missense_Mutation p.K806N 0.33 deleterious(0.05) probably_damaging(0.996) TCGA-CV-A45U-01 11 14853294 14853294 G T PDE3B Nonsense_Mutation p.G689* 0.46 TCGA-CV-A45U-01 11 14853295 14853295 G T PDE3B Missense_Mutation p.G689V 0.43 deleterious(0) probably_damaging(1) TCGA-CV-A45U-01 11 30034296 30034296 T A KCNA4 5'UTR 0.52 TCGA-CV-A45U-01 11 3681097 3681097 G A ART1 Silent p.V116V 0.18 TCGA-CV-A45U-01 11 43419532 43419532 G T TTC17 Silent p.G309G 0.06 TCGA-CV-A45U-01 11 45265715 45265715 A T SYT13 Missense_Mutation p.L390H 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-A45U-01 11 613570 613570 C G IRF7 Silent p.V304V 0.13 TCGA-CV-A45U-01 11 62327592 62327592 G A EEF1G Silent p.S368S 0.41 TCGA-CV-A45U-01 11 66288795 66288795 G C BBS1 Missense_Mutation p.E260Q 0.09 deleterious(0.01) possibly_damaging(0.558) TCGA-CV-A45U-01 11 66468476 66468476 G A SPTBN2 Nonsense_Mutation p.Q1032* 0.09 TCGA-CV-A45U-01 11 66617885 66617885 G A PC Missense_Mutation p.R842W 0.04 deleterious(0) probably_damaging(1) TCGA-CV-A45U-01 11 67196593 67196593 C T RPS6KB2 Missense_Mutation p.P41L 0.11 tolerated(0.22) benign(0.01) TCGA-CV-A45U-01 11 67259452 67259452 C T PITPNM1 3'UTR 0.16 TCGA-CV-A45U-01 11 68579925 68579925 G T CPT1A Silent p.I87I 0.58 TCGA-CV-A45U-01 11 70265886 70265886 C T CTTN Silent p.I201I 0.03 TCGA-CV-A45U-01 11 7065134 7065134 G T NLRP14 Missense_Mutation p.R626L 0.43 tolerated(0.39) benign(0.005) TCGA-CV-A45U-01 11 72290389 72290389 G A PDE2A Silent p.I765I 0.05 TCGA-CV-A45U-01 11 74617424 74617424 G T XRRA1 Nonsense_Mutation p.S280* 0.35 TCGA-CV-A45U-01 11 89880576 89880576 G T NAALAD2 Missense_Mutation p.K91N 0.40 tolerated(0.1) benign(0.34) TCGA-CV-A45U-01 11 96106622 96106622 C A CCDC82 Missense_Mutation p.S334I 0.11 tolerated(0.06) possibly_damaging(0.713) TCGA-CV-A45U-01 12 109186365 109186365 G T SSH1 Silent p.V530V 0.31 TCGA-CV-A45U-01 12 11091155 11091155 T C TAS2R14 Missense_Mutation p.I218V 0.25 deleterious(0.01) benign(0) TCGA-CV-A45U-01 12 117188112 117188112 G A RNFT2 Missense_Mutation p.G184S 0.44 deleterious(0) possibly_damaging(0.849) TCGA-CV-A45U-01 12 118480989 118480989 G A WSB2 Missense_Mutation p.L126F 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A45U-01 12 2017122 2017122 C G CACNA2D4 Missense_Mutation p.E190Q 0.19 tolerated(0.12) benign(0.068) TCGA-CV-A45U-01 12 3659138 3659138 C T PRMT8 Missense_Mutation p.R100W 0.09 deleterious(0) probably_damaging(0.996) TCGA-CV-A45U-01 12 46594952 46594952 G C SLC38A1 Nonsense_Mutation p.S311* 0.21 TCGA-CV-A45U-01 12 52845708 52845708 C T KRT6B Missense_Mutation p.G52E 0.29 deleterious(0.04) unknown(0) TCGA-CV-A45U-01 12 6707098 6707098 T - CHD4 Frame_Shift_Del p.K618Nfs*5 0.14 TCGA-CV-A45U-01 12 7528319 7528319 C G CD163L1 Missense_Mutation p.R888T 0.08 tolerated(0.19) probably_damaging(0.988) TCGA-CV-A45U-01 12 80203692 80203692 A G PPP1R12A Silent p.Y446Y 0.67 TCGA-CV-A45U-01 13 32691487 32691487 G T FRY Missense_Mutation p.S114I 0.56 deleterious(0.01) probably_damaging(0.945) TCGA-CV-A45U-01 14 101439050 101439050 G A SNORD114-15 RNA 0.14 TCGA-CV-A45U-01 14 103414104 103414104 G A CDC42BPB Missense_Mutation p.S1162L 0.17 deleterious(0) possibly_damaging(0.833) TCGA-CV-A45U-01 14 20020023 20020023 G C POTEM Silent p.R66R 0.04 TCGA-CV-A45U-01 14 23792593 23792593 A G PABPN1 Missense_Mutation p.Y181C 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-CV-A45U-01 14 29237007 29237007 G A FOXG1 Silent p.K174K 0.16 TCGA-CV-A45U-01 14 74753088 74753088 C T ABCD4 3'UTR 0.09 TCGA-CV-A45U-01 14 75361060 75361060 G T DLST Nonsense_Mutation p.E240* 0.17 TCGA-CV-A45U-01 14 94546080 94546080 C A DDX24 Missense_Mutation p.L3F 0.51 tolerated_low_confidence(0.06) possibly_damaging(0.793) TCGA-CV-A45U-01 14 95582918 95582918 C T DICER1 Missense_Mutation p.E542K 0.09 tolerated(0.26) probably_damaging(0.983) TCGA-CV-A45U-01 14 99182679 99182680 AG - C14orf177 Frame_Shift_Del p.R51Tfs*2 0.13 TCGA-CV-A45U-01 15 21071293 21071293 G T POTEB2 Silent p.L106L 0.15 TCGA-CV-A45U-01 15 40462759 40462759 G A BUB1B Silent p.Q87Q 0.08 TCGA-CV-A45U-01 15 42678429 42678429 C T CAPN3 Silent p.V148V 0.31 TCGA-CV-A45U-01 15 52611296 52611296 C T MYO5A Missense_Mutation p.R1707Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A45U-01 15 75648327 75648327 G A MAN2C1 Missense_Mutation p.R1032W 0.17 deleterious(0.05) possibly_damaging(0.663) TCGA-CV-A45U-01 15 90348580 90348580 C T ANPEP Silent p.L243L 0.11 TCGA-CV-A45U-01 15 90903702 90903702 G A ZNF774 Silent p.E213E 0.34 TCGA-CV-A45U-01 15 90984875 90984875 T C IQGAP1 Missense_Mutation p.Y263H 0.07 tolerated(0.54) benign(0.002) TCGA-CV-A45U-01 15 94884146 94884146 A G MCTP2 Missense_Mutation p.K321R 0.26 tolerated(0.26) benign(0.016) TCGA-CV-A45U-01 15 96877373 96877373 C G NR2F2 Missense_Mutation p.P171A 0.08 tolerated(0.23) benign(0.005) TCGA-CV-A45U-01 16 16208700 16208700 C A ABCC1 Missense_Mutation p.L1053M 0.26 deleterious(0) probably_damaging(1) TCGA-CV-A45U-01 16 2051070 2051070 G A ZNF598 Missense_Mutation p.A379V 0.31 benign(0.009) TCGA-CV-A45U-01 16 22159581 22159581 G A VWA3A Missense_Mutation p.E980K 0.33 deleterious(0.01) possibly_damaging(0.776) TCGA-CV-A45U-01 16 2499298 2499298 G T CCNF Missense_Mutation p.D412Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-A45U-01 16 30544429 30544429 C A ZNF747 Missense_Mutation p.R176L 0.37 tolerated_low_confidence(0.11) benign(0.008) TCGA-CV-A45U-01 16 30774767 30774767 G A RNF40 Missense_Mutation p.R110Q 0.19 tolerated(1) benign(0.002) TCGA-CV-A45U-01 16 4557930 4557932 ATA - HMOX2 In_Frame_Del p.I141del 0.28 TCGA-CV-A45U-01 16 58031086 58031086 G A ZNF319 Missense_Mutation p.R362W 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-CV-A45U-01 16 58031159 58031159 G A ZNF319 Silent p.H337H 0.50 TCGA-CV-A45U-01 16 67709410 67709410 C T GFOD2 Missense_Mutation p.G269E 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-CV-A45U-01 16 75563610 75563610 C A CHST5 Missense_Mutation p.D225Y 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A45U-01 16 86601490 86601490 C G FOXC2 Silent p.L183L 0.06 TCGA-CV-A45U-01 16 89167169 89167169 G T ACSF3 Missense_Mutation p.R27I 0.19 tolerated_low_confidence(0.11) benign(0.169) TCGA-CV-A45U-01 17 10265729 10265729 T G MYH13 Missense_Mutation p.E99A 0.05 deleterious(0) probably_damaging(0.997) TCGA-CV-A45U-01 17 18152027 18152027 G A FLII Missense_Mutation p.A676V 0.05 deleterious(0.01) possibly_damaging(0.512) TCGA-CV-A45U-01 17 26723334 26723334 G C SARM1 3'UTR 0.06 TCGA-CV-A45U-01 17 27613894 27613894 G A NUFIP2 Missense_Mutation p.S373F 0.19 tolerated_low_confidence(0.06) possibly_damaging(0.66) TCGA-CV-A45U-01 17 29490346 29490346 C T NF1 Missense_Mutation p.S144F 0.16 tolerated(0.11) probably_damaging(0.982) TCGA-CV-A45U-01 17 33339097 33339097 G C RFFL Missense_Mutation p.L328V 0.17 deleterious(0) probably_damaging(0.971) TCGA-CV-A45U-01 17 38133089 38133089 G A GSDMA Silent p.Q372Q 0.18 TCGA-CV-A45U-01 17 39881040 39881040 C T HAP1 Silent p.L591L 0.22 TCGA-CV-A45U-01 17 40733939 40733939 G T FAM134C Silent p.L431L 0.11 TCGA-CV-A45U-01 17 40946994 40946994 C G WNK4 Nonsense_Mutation p.S852* 0.10 TCGA-CV-A45U-01 17 40947762 40947762 C T WNK4 Nonsense_Mutation p.Q1048* 0.07 TCGA-CV-A45U-01 17 41955244 41955244 G A MPP2 Silent p.R530R 0.19 TCGA-CV-A45U-01 17 4837009 4837009 C T GP1BA Silent p.I370I 0.17 TCGA-CV-A45U-01 17 61950556 61950556 C T CSH2 Missense_Mutation p.D52N 0.08 deleterious(0.03) possibly_damaging(0.899) TCGA-CV-A45U-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.58 TCGA-CV-A45U-01 17 8790497 8790497 G A PIK3R5 Silent p.I607I 0.10 TCGA-CV-A45U-01 18 10696215 10696215 C T PIEZO2 Missense_Mutation p.M2236I 0.33 deleterious(0) benign(0.164) TCGA-CV-A45U-01 18 61305169 61305169 C G SERPINB4 Missense_Mutation p.W319C 0.07 deleterious(0.03) benign(0.131) TCGA-CV-A45U-01 18 6999461 6999461 A G LAMA1 Missense_Mutation p.M1549T 0.10 tolerated(0.61) benign(0.045) TCGA-CV-A45U-01 18 9396466 9396466 G T TWSG1 Nonsense_Mutation p.E138* 0.32 TCGA-CV-A45U-01 18 9396470 9396470 C A TWSG1 Missense_Mutation p.T139N 0.29 tolerated(0.26) benign(0.038) TCGA-CV-A45U-01 19 11559735 11559735 C G PRKCSH Silent p.V424V 0.05 TCGA-CV-A45U-01 19 12430288 12430298 AGGTTTCTACG - ZNF563 Frame_Shift_Del p.R181Sfs*11 0.20 TCGA-CV-A45U-01 19 14266107 14266107 C T LPHN1 Intron 0.08 TCGA-CV-A45U-01 19 1805884 1805884 C T ATP8B3 Intron 0.24 TCGA-CV-A45U-01 19 21991574 21991574 C G ZNF43 Missense_Mutation p.G422A 0.26 deleterious(0.01) benign(0.367) TCGA-CV-A45U-01 19 22156461 22156461 C A ZNF208 Missense_Mutation p.G459C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-A45U-01 19 33450813 33450813 T A CEP89 Missense_Mutation p.R100W 0.21 deleterious(0.02) possibly_damaging(0.891) TCGA-CV-A45U-01 19 35232847 35232847 G A ZNF181 Missense_Mutation p.E521K 0.08 deleterious(0.04) probably_damaging(0.933) TCGA-CV-A45U-01 19 3526992 3526992 C T FZR1 Silent p.T134T 0.22 TCGA-CV-A45U-01 19 37005172 37005172 C G ZNF260 Silent p.V323V 0.07 TCGA-CV-A45U-01 19 38055701 38055701 T C ZNF571 Silent p.S543S 0.53 TCGA-CV-A45U-01 19 38861368 38861368 G A CATSPERG Missense_Mutation p.S1139N 0.22 tolerated_low_confidence(0.45) benign(0.383) TCGA-CV-A45U-01 19 40718876 40718876 G C MAP3K10 Missense_Mutation p.E573Q 0.40 tolerated(0.1) probably_damaging(0.995) TCGA-CV-A45U-01 19 41115660 41115660 G A LTBP4 Missense_Mutation p.E590K 0.09 tolerated(0.09) probably_damaging(0.998) TCGA-CV-A45U-01 19 41858677 41858677 C G TGFB1 Missense_Mutation p.E91D 0.38 tolerated(0.1) benign(0.339) TCGA-CV-A45U-01 19 44891190 44891190 C A ZNF285 Missense_Mutation p.G406V 0.35 deleterious(0) probably_damaging(0.997) TCGA-CV-A45U-01 19 53792879 53792879 G T BIRC8 3'UTR 0.39 TCGA-CV-A45U-01 19 55286721 55286721 C T KIR2DL1 Missense_Mutation p.H159Y 0.47 deleterious(0.01) possibly_damaging(0.641) TCGA-CV-A45U-01 19 57328078 57328078 G A PEG3 Silent p.L578L 0.28 TCGA-CV-A45U-01 19 5788365 5788365 T C DUS3L Intron 0.24 TCGA-CV-A45U-01 19 57910422 57910422 G C ZNF548 Missense_Mutation p.R268T 0.07 tolerated(0.48) possibly_damaging(0.719) TCGA-CV-A45U-01 19 889662 889662 C T MED16 Silent p.V141V 0.28 TCGA-CV-A45U-01 19 9061573 9061573 C T MUC16 Missense_Mutation p.E8625K 0.29 unknown(0) TCGA-CV-A45U-01 1 103491398 103491398 C T COL11A1 Intron 0.10 TCGA-CV-A45U-01 1 109805502 109805502 G A CELSR2 Missense_Mutation p.R1540Q 0.17 deleterious(0.04) benign(0.297) TCGA-CV-A45U-01 1 114516174 114516174 C G HIPK1 3'UTR 0.08 TCGA-CV-A45U-01 1 149907004 149907004 C A MTMR11 Missense_Mutation p.V115F 0.36 deleterious(0.04) benign(0.203) TCGA-CV-A45U-01 1 149908102 149908102 C A MTMR11 Missense_Mutation p.M29I 0.42 tolerated(0.2) benign(0.002) TCGA-CV-A45U-01 1 150460453 150460453 G C TARS2 Missense_Mutation p.K62N 0.10 tolerated(0.07) benign(0.035) TCGA-CV-A45U-01 1 151149057 151149057 G A VPS72 3'UTR 0.05 TCGA-CV-A45U-01 1 154901617 154901617 G A PMVK Silent p.T65T 0.19 TCGA-CV-A45U-01 1 157666098 157666098 C T FCRL3 Silent p.V288V 0.11 TCGA-CV-A45U-01 1 158639535 158639535 A G SPTA1 Silent p.H547H 0.10 TCGA-CV-A45U-01 1 160456479 160456479 C G SLAMF6 3'UTR 0.24 TCGA-CV-A45U-01 1 167353161 167353161 G A POU2F1 Silent p.S262S 0.43 TCGA-CV-A45U-01 1 16945551 16945551 C T RP5-1182A14.5 3'Flank 0.07 TCGA-CV-A45U-01 1 17280765 17280765 G A CROCC Silent p.L1078L 0.15 TCGA-CV-A45U-01 1 209964161 209964161 G A IRF6 Nonsense_Mutation p.Q247* 0.15 TCGA-CV-A45U-01 1 209965672 209965672 G A IRF6 Silent p.P203P 0.23 TCGA-CV-A45U-01 1 213058711 213058711 T C FLVCR1 Missense_Mutation p.L390S 0.21 deleterious(0) benign(0.281) TCGA-CV-A45U-01 1 215345353 215345353 G A KCNK2 Missense_Mutation p.S217N 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-CV-A45U-01 1 220232268 220232268 G A BPNT1 Missense_Mutation p.A282V 0.08 tolerated(0.29) possibly_damaging(0.76) TCGA-CV-A45U-01 1 227213809 227213809 C G CDC42BPA Missense_Mutation p.D1458H 0.14 deleterious(0) probably_damaging(0.967) TCGA-CV-A45U-01 1 237870491 237870491 A T RYR2 Missense_Mutation p.T3275S 0.32 benign(0.001) TCGA-CV-A45U-01 1 53676585 53676585 G A CPT2 Silent p.Q413Q 0.18 TCGA-CV-A45U-01 1 62916495 62916495 C T USP1 Missense_Mutation p.S734L 0.32 tolerated(0.4) benign(0.008) TCGA-CV-A45U-01 1 6527458 6527458 C G PLEKHG5 3'Flank 0.25 TCGA-CV-A45U-01 1 6527514 6527514 C T PLEKHG5 3'Flank 0.33 TCGA-CV-A45U-01 1 70897772 70897772 G A CTH Missense_Mutation p.G244E 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-A45U-01 1 93683346 93683346 G C CCDC18 Missense_Mutation p.E681Q 0.28 tolerated(0.05) benign(0.099) TCGA-CV-A45U-01 20 20601267 20601267 A T RALGAPA2 Nonsense_Mutation p.L414* 0.43 TCGA-CV-A45U-01 20 23731520 23731520 G C CST1 5'UTR 0.29 TCGA-CV-A45U-01 20 31022389 31022389 G A ASXL1 Missense_Mutation p.R625Q 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-CV-A45U-01 20 34542206 34542206 T A SCAND1 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.746) TCGA-CV-A45U-01 20 39990047 39990047 C T EMILIN3 Missense_Mutation p.R721K 0.12 tolerated(0.66) benign(0.003) TCGA-CV-A45U-01 20 47990324 47990324 G A KCNB1 Silent p.F591F 0.12 TCGA-CV-A45U-01 20 5897558 5897558 G A CHGB Silent p.L61L 0.20 TCGA-CV-A45U-01 20 5966622 5966622 A G MCM8 Missense_Mutation p.I670V 0.19 tolerated(0.35) benign(0.005) TCGA-CV-A45U-01 21 27253894 27253894 C T APP 3'UTR 0.21 TCGA-CV-A45U-01 21 33954617 33954617 G A AP000275.65 Nonsense_Mutation p.Q259* 0.22 TCGA-CV-A45U-01 22 17264947 17264947 A G XKR3 Silent p.Y314Y 0.23 TCGA-CV-A45U-01 22 18028690 18028690 C T CECR2 Missense_Mutation p.S1217L 0.19 tolerated(0.09) benign(0.009) TCGA-CV-A45U-01 22 25150024 25150024 C T PIWIL3 Missense_Mutation p.E312K 0.09 tolerated(0.06) benign(0.072) TCGA-CV-A45U-01 22 31091274 31091274 G A OSBP2 Silent p.P126P 0.10 TCGA-CV-A45U-01 22 33376640 33376640 C G SYN3 Missense_Mutation p.R120P 0.09 deleterious(0) unknown(0) TCGA-CV-A45U-01 22 38245422 38245422 C T EIF3L 5'UTR 0.08 TCGA-CV-A45U-01 22 42076365 42076365 C T NHP2L1 Missense_Mutation p.E3K 0.09 tolerated(0.2) benign(0.001) TCGA-CV-A45U-01 22 42390716 42390716 C G SEPT3 Missense_Mutation p.P337A 0.25 tolerated(0.37) possibly_damaging(0.811) TCGA-CV-A45U-01 2 103053683 103053683 C A IL18RAP Silent p.L197L 0.29 TCGA-CV-A45U-01 2 110373218 110373218 G T SOWAHC Silent p.R384R 0.21 TCGA-CV-A45U-01 2 110373228 110373228 G C SOWAHC Missense_Mutation p.E388Q 0.17 tolerated(0.18) probably_damaging(0.958) TCGA-CV-A45U-01 2 120124575 120124575 C A DBI 5'Flank 0.30 TCGA-CV-A45U-01 2 132238255 132238255 C G TUBA3D Missense_Mutation p.A330G 0.27 deleterious_low_confidence(0.02) benign(0.102) TCGA-CV-A45U-01 2 135711896 135711896 A G CCNT2 Missense_Mutation p.N624S 0.21 tolerated(0.65) benign(0.006) TCGA-CV-A45U-01 2 141201939 141201939 C T LRP1B Silent p.G3418G 0.19 TCGA-CV-A45U-01 2 179315225 179315225 G C PRKRA Intron 0.35 TCGA-CV-A45U-01 2 179593063 179593063 A G TTN Silent p.S6496S 0.20 TCGA-CV-A45U-01 2 199011517 199011517 T C PLCL1 Missense_Mutation p.L1040P 0.38 deleterious(0) probably_damaging(0.996) TCGA-CV-A45U-01 2 208795753 208795753 C T PLEKHM3 Missense_Mutation p.A595T 0.28 tolerated(0.08) benign(0.183) TCGA-CV-A45U-01 2 220413856 220413856 C G TMEM198 Intron 0.37 TCGA-CV-A45U-01 2 227922257 227922257 C T COL4A4 Missense_Mutation p.A815T 0.40 possibly_damaging(0.811) TCGA-CV-A45U-01 2 232026148 232026148 C G PSMD1 Missense_Mutation p.F771L 0.06 deleterious(0) benign(0.206) TCGA-CV-A45U-01 2 236877175 236877175 C T AGAP1 Missense_Mutation p.P518L 0.25 deleterious(0.04) benign(0.279) TCGA-CV-A45U-01 2 43520026 43520026 C G THADA Missense_Mutation p.E1589Q 0.15 tolerated(0.45) benign(0.14) TCGA-CV-A45U-01 2 53943722 53943722 C A ASB3 Missense_Mutation p.A290S 0.35 tolerated(0.08) benign(0.063) TCGA-CV-A45U-01 2 71762192 71762192 G A DYSF Nonsense_Mutation p.W474* 0.25 TCGA-CV-A45U-01 2 74834291 74834291 C G M1AP Missense_Mutation p.L162F 0.23 deleterious(0) probably_damaging(0.974) TCGA-CV-A45U-01 2 95772185 95772185 C G MRPS5 Missense_Mutation p.D219H 0.16 deleterious(0) probably_damaging(0.992) TCGA-CV-A45U-01 3 121341500 121341500 C G FBXO40 Silent p.L408L 0.05 TCGA-CV-A45U-01 3 128580634 128580634 G C RP11-723O4.9 5'Flank 0.42 TCGA-CV-A45U-01 3 133374295 133374295 T C TOPBP1 Missense_Mutation p.D194G 0.09 deleterious(0.01) benign(0.358) TCGA-CV-A45U-01 3 161214885 161214885 T A OTOL1 Missense_Mutation p.F97Y 0.37 tolerated(0.4) unknown(0) TCGA-CV-A45U-01 3 169486048 169486048 C G ACTRT3 Silent p.P97P 0.04 TCGA-CV-A45U-01 3 169487311 169487311 C A ACTRT3 5'UTR 0.23 TCGA-CV-A45U-01 3 172474892 172474892 C G ECT2 Silent p.L141L 0.05 TCGA-CV-A45U-01 3 179502023 179502023 G A USP13 3'UTR 0.14 TCGA-CV-A45U-01 3 181430499 181430499 G A SOX2 Silent p.K117K 0.10 TCGA-CV-A45U-01 3 183381386 183381386 C G KLHL24 Nonsense_Mutation p.S354* 0.04 TCGA-CV-A45U-01 3 184046528 184046529 - T EIF4G1 Frame_Shift_Ins p.M1362Ifs*36 0.12 TCGA-CV-A45U-01 3 184714213 184714213 A G VPS8 Missense_Mutation p.K1254E 0.05 tolerated(0.08) benign(0.269) TCGA-CV-A45U-01 3 189526213 189526213 C A TP63 Silent p.L159L 0.70 TCGA-CV-A45U-01 3 193068949 193068949 A T ATP13A5 Silent p.T216T 0.10 TCGA-CV-A45U-01 3 193333484 193333484 A G OPA1 Missense_Mutation p.M125V 0.41 tolerated(0.61) benign(0.004) TCGA-CV-A45U-01 3 19554770 19554770 G A KCNH8 Silent p.L796L 0.51 TCGA-CV-A45U-01 3 196664028 196664028 G A NCBP2 Intron 0.67 TCGA-CV-A45U-01 3 26751183 26751183 G A LRRC3B Nonsense_Mutation p.W7* 0.17 TCGA-CV-A45U-01 4 107956591 107956591 C A DKK2 Missense_Mutation p.R53L 0.09 tolerated(0.46) benign(0.184) TCGA-CV-A45U-01 4 155506937 155506937 G T FGA Silent p.G548G 0.56 TCGA-CV-A45U-01 4 170999665 170999665 G A AADAT Nonsense_Mutation p.Q147* 0.10 TCGA-CV-A45U-01 4 52961186 52961186 A G SPATA18 3'UTR 0.19 TCGA-CV-A45U-01 4 59958 59958 G A ZNF595 Silent p.V46V 0.09 TCGA-CV-A45U-01 4 76879075 76879075 A G SDAD1 Silent p.S501S 0.09 TCGA-CV-A45U-01 5 134678905 134678905 G A C5orf66 Missense_Mutation p.E63K 0.25 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-CV-A45U-01 5 13729585 13729585 A C DNAH5 Missense_Mutation p.L3949R 0.29 probably_damaging(0.928) TCGA-CV-A45U-01 5 137464973 137464973 G A NME5 Missense_Mutation p.A105V 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-A45U-01 5 140559051 140559051 G A PCDHB8 Missense_Mutation p.R479K 0.12 tolerated_low_confidence(0.08) benign(0.013) TCGA-CV-A45U-01 5 140626044 140626044 G A PCDHB15 Missense_Mutation p.E300K 0.44 deleterious_low_confidence(0.01) benign(0.158) TCGA-CV-A45U-01 5 140869424 140869424 C G PCDHGC5 Missense_Mutation p.A206G 0.36 tolerated(0.24) benign(0.11) TCGA-CV-A45U-01 5 145537113 145537113 C A LARS Missense_Mutation p.W306C 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A45U-01 5 145610354 145610354 G T RBM27 Missense_Mutation p.V242L 0.31 deleterious(0.01) benign(0.15) TCGA-CV-A45U-01 5 14690362 14690362 G A FAM105B Missense_Mutation p.G270E 0.29 tolerated(0.5) benign(0.012) TCGA-CV-A45U-01 5 170345790 170345790 G A RANBP17 Missense_Mutation p.G343E 0.24 deleterious(0.01) benign(0.109) TCGA-CV-A45U-01 5 6632788 6632788 C T NSUN2 Missense_Mutation p.E60K 0.07 deleterious(0.01) benign(0.136) TCGA-CV-A45U-01 5 78340264 78340264 C T DMGDH Missense_Mutation p.R286Q 0.18 tolerated(0.49) benign(0.009) TCGA-CV-A45U-01 5 79372740 79372740 T A THBS4 Missense_Mutation p.L652Q 0.31 tolerated(0.13) probably_damaging(0.999) TCGA-CV-A45U-01 5 94927134 94927134 G C ARSK Missense_Mutation p.D301H 0.29 deleterious(0.02) benign(0.033) TCGA-CV-A45U-01 6 116758059 116758059 C T DSE Nonsense_Mutation p.R810* 0.27 TCGA-CV-A45U-01 6 123118043 123118043 C T SMPDL3A Missense_Mutation p.T134I 0.37 tolerated(0.15) benign(0.009) TCGA-CV-A45U-01 6 166952261 166952261 G A RPS6KA2 Silent p.V45V 0.15 TCGA-CV-A45U-01 6 17556754 17556754 G A CAP2 3'UTR 0.36 TCGA-CV-A45U-01 6 17837133 17837133 C T KIF13A Silent p.L377L 0.08 TCGA-CV-A45U-01 6 26409843 26409843 C T BTN3A1 Silent p.A266A 0.13 TCGA-CV-A45U-01 6 27114238 27114238 C G HIST1H2BK Missense_Mutation p.E114Q 0.19 deleterious_low_confidence(0.02) benign(0.137) TCGA-CV-A45U-01 6 30520892 30520892 C G GNL1 Silent p.L291L 0.20 TCGA-CV-A45U-01 6 31324613 31324613 C T HLA-B Silent p.A65A 0.04 TCGA-CV-A45U-01 6 31996955 31996955 C T C4B Silent p.I1172I 0.14 TCGA-CV-A45U-01 6 32138603 32138603 G C AGPAT1 Intron 0.17 TCGA-CV-A45U-01 6 36353323 36353323 G A ETV7 Missense_Mutation p.P44S 0.42 deleterious(0) probably_damaging(1) TCGA-CV-A45U-01 6 37442363 37442363 A T CMTR1 Missense_Mutation p.T629S 0.12 deleterious(0.03) benign(0.142) TCGA-CV-A45U-01 6 43111249 43111249 C G PTK7 Silent p.A722A 0.05 TCGA-CV-A45U-01 6 43220495 43220495 G A TTBK1 Missense_Mutation p.G43R 0.15 probably_damaging(1) TCGA-CV-A45U-01 7 100551948 100551948 C A MUC3A Silent p.I233I 0.07 TCGA-CV-A45U-01 7 102553513 102553513 G C LRRC17 5'UTR 0.09 TCGA-CV-A45U-01 7 103205840 103205840 C T RELN Missense_Mutation p.E1699K 0.16 tolerated(0.18) benign(0.029) TCGA-CV-A45U-01 7 120373044 120373044 T A KCND2 Silent p.P401P 0.24 TCGA-CV-A45U-01 7 121684554 121684554 C G PTPRZ1 Missense_Mutation p.H2006D 0.11 deleterious(0) benign(0.228) TCGA-CV-A45U-01 7 155090046 155090046 G A INSIG1 Silent p.A17A 0.27 TCGA-CV-A45U-01 7 26224715 26224715 G A NFE2L3 Missense_Mutation p.G466D 0.11 deleterious(0.04) probably_damaging(1) TCGA-CV-A45U-01 7 37960738 37960738 T A EPDR1 Missense_Mutation p.L66Q 0.10 tolerated(0.39) benign(0.005) TCGA-CV-A45U-01 7 43663374 43663374 A G STK17A Silent p.Q269Q 0.49 TCGA-CV-A45U-01 7 44102419 44102419 C T PGAM2 Missense_Mutation p.E236K 0.26 tolerated(0.13) benign(0.001) TCGA-CV-A45U-01 7 44102506 44102506 C T PGAM2 Missense_Mutation p.E207K 0.29 tolerated(0.29) benign(0.034) TCGA-CV-A45U-01 7 45632418 45632418 C T ADCY1 Silent p.L234L 0.31 TCGA-CV-A45U-01 7 79764470 79764470 C T GNAI1 5'UTR 0.32 TCGA-CV-A45U-01 7 84651774 84651774 C T SEMA3D Silent p.L449L 0.12 TCGA-CV-A45U-01 7 94989368 94989368 G A PON3 Nonsense_Mutation p.Q328* 0.08 TCGA-CV-A45U-01 7 98527677 98527677 G C TRRAP Missense_Mutation p.E1081Q 0.10 benign(0.011) TCGA-CV-A45U-01 8 103359294 103359294 C G UBR5 Missense_Mutation p.G138A 0.08 tolerated(0.26) probably_damaging(0.952) TCGA-CV-A45U-01 8 142199099 142199099 G A DENND3 Missense_Mutation p.M953I 0.13 deleterious(0.04) benign(0.094) TCGA-CV-A45U-01 8 28974434 28974434 C G KIF13B Missense_Mutation p.V1251L 0.07 tolerated(0.36) benign(0.079) TCGA-CV-A45U-01 8 3245115 3245115 C T CSMD1 Missense_Mutation p.V895M 0.44 probably_damaging(0.978) TCGA-CV-A45U-01 8 53071579 53071579 C A ST18 Missense_Mutation p.S562I 0.25 deleterious(0.01) possibly_damaging(0.797) TCGA-CV-A45U-01 9 125424594 125424594 G C OR1L1 Missense_Mutation p.M200I 0.27 tolerated(0.13) benign(0.021) TCGA-CV-A45U-01 9 130241761 130241761 G A LRSAM1 Missense_Mutation p.E294K 0.24 tolerated(0.22) possibly_damaging(0.871) TCGA-CV-A45U-01 9 133569283 133569283 G A EXOSC2 Silent p.T35T 0.51 TCGA-CV-A45U-01 9 15453088 15453088 C G SNAPC3 Missense_Mutation p.Q289E 0.07 tolerated(0.13) benign(0.021) TCGA-CV-A45U-01 9 19126394 19126394 C G PLIN2 Splice_Site p.X10_splice 0.40 TCGA-CV-A45U-01 9 5765456 5765456 C G KIAA1432 Missense_Mutation p.L962V 0.23 deleterious(0) probably_damaging(0.996) TCGA-CV-A45U-01 9 72086606 72086606 T C APBA1 Silent p.R434R 0.35 TCGA-CV-A45U-01 9 79318747 79318747 G A PRUNE2 Silent p.F2594F 0.08 TCGA-CV-A45U-01 X 106845221 106845221 C T FRMPD3 Missense_Mutation p.P1351S 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.531) TCGA-CV-A45U-01 X 108917628 108917628 C T ACSL4 Intron 0.38 TCGA-CV-A45U-01 X 122599621 122599621 C T GRIA3 Silent p.S807S 0.08 TCGA-CV-A45U-01 X 12837736 12837736 G T PRPS2 Missense_Mutation p.R217L 0.46 deleterious(0.01) benign(0.038) TCGA-CV-A45U-01 X 142795431 142795431 C T SPANXN2 Missense_Mutation p.E83K 0.13 tolerated(0.12) benign(0.228) TCGA-CV-A45U-01 X 37027331 37027331 G T FAM47C Missense_Mutation p.C283F 0.64 tolerated(0.71) probably_damaging(0.983) TCGA-CV-A45U-01 X 40994016 40994016 C T USP9X Missense_Mutation p.R121C 0.23 deleterious(0.02) probably_damaging(0.974) TCGA-CV-A45V-01 10 116975496 116975496 G T ATRNL1 Missense_Mutation p.V464L 0.17 deleterious(0.02) benign(0.114) TCGA-CV-A45V-01 10 124672390 124672390 C T FAM24A Nonsense_Mutation p.Q80* 0.28 TCGA-CV-A45V-01 10 134659584 134659584 G T TTC40 Missense_Mutation p.Q2139K 0.21 deleterious(0.03) benign(0.391) TCGA-CV-A45V-01 10 31809262 31809262 G A ZEB1 Silent p.E334E 0.24 TCGA-CV-A45V-01 11 111914221 111914221 G C DLAT Missense_Mutation p.K387N 0.28 tolerated(0.23) probably_damaging(0.967) TCGA-CV-A45V-01 11 113661018 113661018 G A ATF4P4 RNA 0.20 TCGA-CV-A45V-01 11 124624128 124624128 T C ESAM Missense_Mutation p.E280G 0.11 deleterious(0) probably_damaging(0.918) TCGA-CV-A45V-01 11 134022798 134022798 C T NCAPD3 3'UTR 0.20 TCGA-CV-A45V-01 11 134072773 134072773 T C NCAPD3 Missense_Mutation p.N518S 0.11 tolerated(0.71) benign(0.002) TCGA-CV-A45V-01 11 1861837 1861837 C T TNNI2 Missense_Mutation p.A46V 0.18 deleterious(0.03) benign(0.054) TCGA-CV-A45V-01 11 35219730 35219730 G A CD44 Missense_Mutation p.D287N 0.07 deleterious(0.03) possibly_damaging(0.611) TCGA-CV-A45V-01 11 40137483 40137483 G A LRRC4C Silent p.F120F 0.26 TCGA-CV-A45V-01 11 62382258 62382258 G A ROM1 Missense_Mutation p.E335K 0.21 tolerated(0.37) benign(0.05) TCGA-CV-A45V-01 11 64335222 64335222 A G SLC22A11 Missense_Mutation p.I404V 0.23 tolerated(0.05) benign(0.006) TCGA-CV-A45V-01 12 116446288 116446288 C A MED13L Missense_Mutation p.A644S 0.16 tolerated(0.6) unknown(0) TCGA-CV-A45V-01 12 22068752 22068752 C A ABCC9 Missense_Mutation p.L222F 0.19 deleterious(0.02) possibly_damaging(0.723) TCGA-CV-A45V-01 12 26750065 26750065 C T ITPR2 Silent p.L1335L 0.22 TCGA-CV-A45V-01 12 29908713 29908713 C G TMTC1 Missense_Mutation p.E220D 0.27 deleterious(0.01) probably_damaging(1) TCGA-CV-A45V-01 12 49391306 49391306 G A DDN Silent p.G451G 0.30 TCGA-CV-A45V-01 12 49434709 49434709 G - KMT2D Frame_Shift_Del p.R2282Gfs*4 0.15 TCGA-CV-A45V-01 12 49443640 49443641 - C KMT2D Frame_Shift_Ins p.V1244Gfs*6 0.18 TCGA-CV-A45V-01 12 56089351 56089351 C T ITGA7 Missense_Mutation p.R657H 0.14 deleterious(0.03) benign(0.038) TCGA-CV-A45V-01 12 56525990 56525990 C T ESYT1 Intron 0.21 TCGA-CV-A45V-01 12 62104199 62104199 C A FAM19A2 Splice_Site p.X129_splice 0.25 TCGA-CV-A45V-01 12 96368042 96368042 A T HAL Missense_Mutation p.S648T 0.25 tolerated_low_confidence(0.62) benign(0) TCGA-CV-A45V-01 13 46357626 46357626 G A SIAH3 Silent p.C234C 0.23 TCGA-CV-A45V-01 14 24761870 24761871 CA - DHRS1 Frame_Shift_Del p.V165Gfs*6 0.11 TCGA-CV-A45V-01 14 47530496 47530496 C G MDGA2 Missense_Mutation p.G494A 0.17 tolerated(0.18) possibly_damaging(0.47) TCGA-CV-A45V-01 14 58838631 58838631 C T ARID4A Missense_Mutation p.S1233F 0.21 deleterious(0) probably_damaging(0.998) TCGA-CV-A45V-01 14 77914856 77914856 C T VIPAS39 Missense_Mutation p.R162Q 0.19 tolerated(0.18) benign(0.076) TCGA-CV-A45V-01 14 94582877 94582877 C T IFI27 3'UTR 0.27 TCGA-CV-A45V-01 15 63824819 63824819 T C USP3 Intron 0.20 TCGA-CV-A45V-01 15 75013358 75013358 G A CYP1A1 Silent p.I401I 0.20 TCGA-CV-A45V-01 15 79382968 79382968 C T RASGRF1 5'UTR 0.19 TCGA-CV-A45V-01 16 67469639 67469639 G A HSD11B2 Missense_Mutation p.R125H 0.31 deleterious(0) possibly_damaging(0.611) TCGA-CV-A45V-01 16 67650732 67650732 C G CTCF Missense_Mutation p.T346S 0.22 deleterious(0) possibly_damaging(0.614) TCGA-CV-A45V-01 16 69362955 69362956 - G RP11-343C2.12 Frame_Shift_Ins p.Q160Pfs*11 0.14 TCGA-CV-A45V-01 16 75661735 75661735 T G KARS 3'UTR 0.27 TCGA-CV-A45V-01 16 84132699 84132699 G A MBTPS1 Missense_Mutation p.T127M 0.19 deleterious(0.02) probably_damaging(0.945) TCGA-CV-A45V-01 17 10318816 10318816 C T MYH8 Silent p.K207K 0.28 TCGA-CV-A45V-01 17 29632280 29632280 G T EVI2B Silent p.S116S 0.21 TCGA-CV-A45V-01 17 37566595 37566595 G C MED1 Missense_Mutation p.H627D 0.13 deleterious_low_confidence(0.05) benign(0.345) TCGA-CV-A45V-01 17 41154796 41154796 G C RPL27 Missense_Mutation p.E120Q 0.16 deleterious(0.05) benign(0.155) TCGA-CV-A45V-01 17 44144914 44144914 C T KANSL1 Splice_Site p.X551_splice 0.21 TCGA-CV-A45V-01 17 5463006 5463006 C G NLRP1 Missense_Mutation p.G337A 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A45V-01 17 77082217 77082217 C T ENGASE Missense_Mutation p.S673F 0.16 deleterious(0.05) possibly_damaging(0.646) TCGA-CV-A45V-01 18 12454453 12454453 G A SPIRE1 Silent p.L556L 0.26 TCGA-CV-A45V-01 19 11027111 11027111 C T CARM1 Silent p.V292V 0.15 TCGA-CV-A45V-01 19 15839711 15839711 C G OR10H2 Silent p.L286L 0.22 TCGA-CV-A45V-01 19 18376100 18376100 T C KIAA1683 Silent p.T750T 0.28 TCGA-CV-A45V-01 19 19626255 19626256 - G TSSK6 5'UTR 0.18 TCGA-CV-A45V-01 19 2811699 2811699 G A THOP1 Silent p.T625T 0.17 TCGA-CV-A45V-01 19 45805657 45805657 G A MARK4 Missense_Mutation p.E650K 0.13 tolerated(0.17) benign(0.011) TCGA-CV-A45V-01 19 50453366 50453366 C T SIGLEC11 Missense_Mutation p.R653K 0.24 tolerated(0.28) benign(0.437) TCGA-CV-A45V-01 19 56466411 56466411 G A NLRP8 Silent p.T329T 0.16 TCGA-CV-A45V-01 19 6374988 6374988 C G ALKBH7 3'UTR 0.17 TCGA-CV-A45V-01 19 9020030 9020030 C T MUC16 Missense_Mutation p.E12489K 0.22 possibly_damaging(0.679) TCGA-CV-A45V-01 19 9768731 9768731 G C ZNF562 Silent p.L65L 0.19 TCGA-CV-A45V-01 1 110740903 110740903 G A SLC6A17 Missense_Mutation p.R674H 0.20 tolerated(0.06) possibly_damaging(0.886) TCGA-CV-A45V-01 1 11082205 11082205 G A TARDBP Missense_Mutation p.D247N 0.15 deleterious(0.01) possibly_damaging(0.677) TCGA-CV-A45V-01 1 11561057 11561057 C A PTCHD2 Missense_Mutation p.T3K 0.17 deleterious_low_confidence(0.03) benign(0.024) TCGA-CV-A45V-01 1 11561058 11561058 G T PTCHD2 Silent p.T3T 0.17 TCGA-CV-A45V-01 1 117297514 117297514 C T CD2 Missense_Mutation p.S108L 0.15 tolerated(0.33) benign(0.362) TCGA-CV-A45V-01 1 152276430 152276430 G A FLG Silent p.H3644H 0.20 TCGA-CV-A45V-01 1 152286682 152286682 C T FLG Nonsense_Mutation p.W227* 0.17 TCGA-CV-A45V-01 1 172558148 172558148 G T SUCO Missense_Mutation p.W636L 0.17 deleterious(0.04) benign(0.03) TCGA-CV-A45V-01 1 18152775 18152775 C T ACTL8 Missense_Mutation p.R288C 0.18 deleterious(0.02) benign(0.042) TCGA-CV-A45V-01 1 221054616 221054616 G A HLX Missense_Mutation p.A225T 0.23 tolerated(0.16) benign(0.312) TCGA-CV-A45V-01 1 228645819 228645819 G A HIST3H2BB 5'UTR 0.22 TCGA-CV-A45V-01 1 33233462 33233462 C T KIAA1522 Missense_Mutation p.H104Y 0.17 tolerated(0.9) unknown(0) TCGA-CV-A45V-01 1 34329683 34329683 C G HMGB4 5'UTR 0.11 TCGA-CV-A45V-01 1 38227318 38227318 C T EPHA10 Silent p.S203S 0.17 TCGA-CV-A45V-01 1 78001608 78001608 G A AK5 Missense_Mutation p.R502Q 0.33 tolerated(0.76) benign(0) TCGA-CV-A45V-01 20 18464161 18464161 C T POLR3F Missense_Mutation p.P304S 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A45V-01 20 30070268 30070268 G A REM1 Missense_Mutation p.R201H 0.11 deleterious(0) probably_damaging(0.993) TCGA-CV-A45V-01 21 22652929 22652929 A C NCAM2 Missense_Mutation p.K29N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A45V-01 22 16449114 16449114 C A OR11H1 Nonsense_Mutation p.G231* 0.19 TCGA-CV-A45V-01 22 42078470 42078470 G C NHP2L1 5'UTR 0.16 TCGA-CV-A45V-01 2 103063602 103063602 A G IL18RAP Missense_Mutation p.Y382C 0.24 tolerated(0.05) benign(0.179) TCGA-CV-A45V-01 2 128354096 128354096 C G MYO7B Silent p.L768L 0.12 TCGA-CV-A45V-01 2 173853508 173853508 C G RAPGEF4 Missense_Mutation p.R439G 0.18 deleterious(0.01) probably_damaging(1) TCGA-CV-A45V-01 2 202149646 202149646 C G CASP8 Missense_Mutation p.H363D 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A45V-01 2 202149977 202149978 AC - CASP8 Frame_Shift_Del p.N473Tfs*24 0.15 TCGA-CV-A45V-01 2 231264899 231264899 G A SP140L Missense_Mutation p.D419N 0.26 deleterious(0.03) probably_damaging(1) TCGA-CV-A45V-01 2 231740463 231740463 C T ITM2C Silent p.N130N 0.21 TCGA-CV-A45V-01 2 234681074 234681074 G A UGT1A4 Missense_Mutation p.V492M 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-A45V-01 2 27352634 27352634 G C ABHD1 Silent p.L210L 0.19 TCGA-CV-A45V-01 2 27500827 27500827 C T DNAJC5G Missense_Mutation p.H107Y 0.06 deleterious(0) probably_damaging(0.997) TCGA-CV-A45V-01 2 31484543 31484543 C T EHD3 Silent p.I348I 0.15 TCGA-CV-A45V-01 3 127399121 127399121 C T ABTB1 Missense_Mutation p.R414W 0.29 deleterious(0.04) benign(0.006) TCGA-CV-A45V-01 3 128181846 128181846 C T DNAJB8 Silent p.T81T 0.28 TCGA-CV-A45V-01 3 130889682 130889682 C T NEK11 Silent p.H450H 0.20 TCGA-CV-A45V-01 3 172232786 172232786 C T TNFSF10 Missense_Mutation p.M45I 0.19 tolerated(0.14) benign(0.003) TCGA-CV-A45V-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-CV-A45V-01 3 187449600 187449600 G A BCL6 Missense_Mutation p.R94W 0.28 tolerated(0.18) probably_damaging(1) TCGA-CV-A45V-01 3 39229311 39229311 C T XIRP1 Silent p.V542V 0.14 TCGA-CV-A45V-01 3 44893329 44893329 G A KIF15 Missense_Mutation p.R1286K 0.25 tolerated(0.22) benign(0.004) TCGA-CV-A45V-01 3 73432536 73432536 G A PDZRN3 Silent p.L1061L 0.21 TCGA-CV-A45V-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A45V-01 4 154271221 154271221 G C MND1 Missense_Mutation p.K3N 0.51 deleterious(0) probably_damaging(0.984) TCGA-CV-A45V-01 4 162680600 162680600 G A FSTL5 Silent p.D230D 0.47 TCGA-CV-A45V-01 4 187518286 187518286 G C FAT1 Missense_Mutation p.C4136W 0.57 probably_damaging(1) TCGA-CV-A45V-01 4 44638054 44638054 C T YIPF7 Silent p.E79E 0.21 TCGA-CV-A45V-01 4 66356240 66356240 G A EPHA5 Silent p.S419S 0.12 TCGA-CV-A45V-01 5 140532066 140532066 T C PCDHB6 Missense_Mutation p.L743P 0.41 deleterious(0) possibly_damaging(0.575) TCGA-CV-A45V-01 5 176516626 176516627 - G FGFR4 Frame_Shift_Ins p.V10Gfs*17 0.30 TCGA-CV-A45V-01 5 32789434 32789434 C T NPR3 3'UTR 0.29 TCGA-CV-A45V-01 6 125283974 125283974 C G RP11-510H23.1 RNA 0.12 TCGA-CV-A45V-01 6 147648386 147648386 C T STXBP5 Missense_Mutation p.P685L 0.23 deleterious(0) possibly_damaging(0.596) TCGA-CV-A45V-01 6 27925589 27925589 G C OR2B6 Missense_Mutation p.E191Q 0.23 deleterious(0) benign(0.175) TCGA-CV-A45V-01 6 40400811 40400811 C T LRFN2 Silent p.A14A 0.16 TCGA-CV-A45V-01 6 56495047 56495047 A C DST Nonsense_Mutation p.L889* 0.21 TCGA-CV-A45V-01 6 71186939 71186939 A C FAM135A Missense_Mutation p.H149P 0.22 deleterious(0) probably_damaging(1) TCGA-CV-A45V-01 7 100173357 100173357 C T LRCH4 Missense_Mutation p.E609K 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-CV-A45V-01 7 100173369 100173369 C T LRCH4 Missense_Mutation p.E605K 0.31 deleterious(0) probably_damaging(0.998) TCGA-CV-A45V-01 7 122635251 122635251 A T TAS2R16 Silent p.I146I 0.12 TCGA-CV-A45V-01 7 127222032 127222032 G C GCC1 3'UTR 0.21 TCGA-CV-A45V-01 7 147600793 147600793 C T CNTNAP2 Silent p.C745C 0.23 TCGA-CV-A45V-01 7 151848643 151848644 - A KMT2C Frame_Shift_Ins p.S4184* 0.27 TCGA-CV-A45V-01 7 30831154 30831154 C T FAM188B Missense_Mutation p.A346V 0.19 tolerated(0.12) benign(0.019) TCGA-CV-A45V-01 7 82072745 82072745 G C CACNA2D1 Missense_Mutation p.L11V 0.19 tolerated(0.11) probably_damaging(0.953) TCGA-CV-A45V-01 8 128750945 128750945 C T MYC Missense_Mutation p.S161L 0.47 deleterious(0) possibly_damaging(0.888) TCGA-CV-A45V-01 8 139890116 139890116 C T COL22A1 Missense_Mutation p.E179K 0.30 unknown(0) TCGA-CV-A45V-01 8 143763518 143763518 G T PSCA Missense_Mutation p.G105C 0.33 deleterious(0.04) unknown(0) TCGA-CV-A45V-01 8 17486062 17486062 A T PDGFRL Missense_Mutation p.Q191L 0.22 deleterious(0) benign(0.334) TCGA-CV-A45V-01 8 27463875 27463875 C T CLU Missense_Mutation p.R138H 0.22 tolerated(0.29) benign(0.005) TCGA-CV-A45V-01 8 38385908 38385908 C T C8orf86 Missense_Mutation p.R83Q 0.20 tolerated_low_confidence(0.31) benign(0.417) TCGA-CV-A45V-01 8 98731338 98731338 G A MTDH Missense_Mutation p.R481H 0.24 tolerated(0.14) benign(0.006) TCGA-CV-A45V-01 9 100692729 100692729 T G HEMGN Missense_Mutation p.Q316H 0.19 deleterious(0.04) possibly_damaging(0.693) TCGA-CV-A45V-01 9 131219619 131219619 C T ODF2 5'UTR 0.15 TCGA-CV-A45V-01 9 135501125 135501125 C T DDX31 Missense_Mutation p.E652K 0.12 deleterious(0.02) possibly_damaging(0.656) TCGA-CV-A45V-01 9 139404216 139404216 A C NOTCH1 Missense_Mutation p.C980G 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-A45V-01 9 88162179 88162179 C T AGTPBP1 Missense_Mutation p.E1136K 0.11 deleterious(0) possibly_damaging(0.686) TCGA-CV-A45V-01 X 101971737 101971737 T A GPRASP2 Missense_Mutation p.L647H 0.21 deleterious(0) probably_damaging(0.988) TCGA-CV-A45V-01 X 102979121 102979121 T A GLRA4 Missense_Mutation p.I127F 0.25 deleterious(0.04) probably_damaging(1) TCGA-CV-A45V-01 X 106893263 106893267 TAGAG - PRPS1 3'UTR 0.16 TCGA-CV-A45V-01 X 140983074 140983074 G A MAGEC3 Missense_Mutation p.G310E 0.32 tolerated(0.15) benign(0.28) TCGA-CV-A45V-01 X 142596802 142596802 C A SPANXN3 Missense_Mutation p.D90Y 0.17 deleterious(0) possibly_damaging(0.792) TCGA-CV-A45V-01 X 1471372 1471372 G T IL3RA Missense_Mutation p.D197Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-CV-A45V-01 X 155171682 155171682 C G VAMP7 Nonsense_Mutation p.S221* 0.28 TCGA-CV-A45V-01 X 53456754 53456754 G A RIBC1 Intron 0.25 TCGA-CV-A45V-01 X 65392194 65392194 C T HEPH Intron 0.26 TCGA-CV-A45V-01 X 83616598 83616598 C G HDX Missense_Mutation p.S443T 0.28 deleterious(0) probably_damaging(0.995) TCGA-CV-A45V-01 X 9679711 9679711 G A TBL1X Silent p.T500T 0.24 TCGA-CV-A45W-01 10 108378007 108378007 G C SORCS1 Missense_Mutation p.S940R 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-CV-A45W-01 10 114053533 114053533 T C TECTB Missense_Mutation p.V174A 0.10 tolerated(0.11) benign(0.332) TCGA-CV-A45W-01 10 115535551 115535551 G A PLEKHS1 Silent p.E319E 0.09 TCGA-CV-A45W-01 10 126655286 126655286 A G ZRANB1 Missense_Mutation p.Y313C 0.10 deleterious(0.04) possibly_damaging(0.466) TCGA-CV-A45W-01 10 127505020 127505020 C - UROS Frame_Shift_Del p.D17Ifs*7 0.08 TCGA-CV-A45W-01 10 127525408 127525408 G A DHX32 Missense_Mutation p.P694S 0.11 deleterious(0.01) probably_damaging(1) TCGA-CV-A45W-01 10 129905570 129905570 T A MKI67 Nonsense_Mutation p.K1512* 0.14 TCGA-CV-A45W-01 10 15138705 15138705 T G C10orf111 Missense_Mutation p.K40T 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-CV-A45W-01 10 16911675 16911675 C T CUBN Silent p.Q3138Q 0.08 TCGA-CV-A45W-01 10 17373487 17373487 C A ST8SIA6 Missense_Mutation p.V148F 0.09 deleterious(0.01) possibly_damaging(0.595) TCGA-CV-A45W-01 10 30629351 30629351 T A MTPAP Missense_Mutation p.Q120L 0.07 deleterious(0.04) benign(0.066) TCGA-CV-A45W-01 10 38344245 38344245 C A ZNF33A Nonsense_Mutation p.S398* 0.10 TCGA-CV-A45W-01 10 38344913 38344913 A G ZNF33A Missense_Mutation p.K621E 0.07 deleterious(0.01) possibly_damaging(0.703) TCGA-CV-A45W-01 10 44139772 44139772 T G ZNF32 Missense_Mutation p.H183P 0.11 deleterious(0.02) probably_damaging(1) TCGA-CV-A45W-01 10 48388265 48388265 G T RBP3 Silent p.P871P 0.32 TCGA-CV-A45W-01 10 50121750 50121750 G T LRRC18 Missense_Mutation p.L151I 0.12 deleterious(0.02) possibly_damaging(0.601) TCGA-CV-A45W-01 10 51821254 51821254 T A RP11-324H6.5 RNA 0.09 TCGA-CV-A45W-01 10 52389533 52389533 G T RP11-50E11.3 RNA 0.13 TCGA-CV-A45W-01 10 65354573 65354573 C T REEP3 Silent p.L47L 0.11 TCGA-CV-A45W-01 10 68686993 68686993 G T LRRTM3 Nonsense_Mutation p.G107* 0.10 TCGA-CV-A45W-01 10 7218053 7218053 C A SFMBT2 Missense_Mutation p.R628L 0.09 deleterious(0.02) possibly_damaging(0.892) TCGA-CV-A45W-01 10 75528771 75528771 G T SEC24C Missense_Mutation p.R762L 0.11 deleterious(0) possibly_damaging(0.828) TCGA-CV-A45W-01 10 7604965 7604965 T C ITIH5 3'UTR 0.11 TCGA-CV-A45W-01 10 81706396 81706396 G A SFTPD Missense_Mutation p.S7F 0.14 tolerated(0.75) unknown(0) TCGA-CV-A45W-01 10 83635788 83635788 C G NRG3 Missense_Mutation p.T231S 0.11 tolerated(0.06) possibly_damaging(0.775) TCGA-CV-A45W-01 10 88476291 88476291 G T LDB3 Missense_Mutation p.G485V 0.07 deleterious(0.01) benign(0.272) TCGA-CV-A45W-01 10 96541650 96541650 T C CYP2C19 Missense_Mutation p.F239L 0.14 tolerated(0.64) benign(0.003) TCGA-CV-A45W-01 10 97917390 97917390 C T ZNF518A RNA 0.11 TCGA-CV-A45W-01 10 98762651 98762651 C T SLIT1 Missense_Mutation p.E1322K 0.06 tolerated(0.42) possibly_damaging(0.733) TCGA-CV-A45W-01 10 99349602 99349602 C T C10orf62 5'UTR 0.09 TCGA-CV-A45W-01 11 107263575 107263575 C A CWF19L2 Missense_Mutation p.G555V 0.15 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 11 113934906 113934906 T A ZBTB16 Missense_Mutation p.L295Q 0.25 deleterious(0.05) probably_damaging(0.98) TCGA-CV-A45W-01 11 114441971 114441971 A T NXPE4 Missense_Mutation p.F442I 0.12 deleterious(0) probably_damaging(0.92) TCGA-CV-A45W-01 11 123596941 123596941 C A ZNF202 Missense_Mutation p.G571W 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 11 124670188 124670188 C A MSANTD2 Missense_Mutation p.G30V 0.20 tolerated_low_confidence(0.07) benign(0.001) TCGA-CV-A45W-01 11 125647292 125647292 G A PATE2 Silent p.L109L 0.16 TCGA-CV-A45W-01 11 128851369 128851369 C T ARHGAP32 Silent p.L560L 0.18 TCGA-CV-A45W-01 11 14502569 14502569 T G COPB1 Silent p.A344A 0.06 TCGA-CV-A45W-01 11 14539270 14539270 C A PSMA1 Missense_Mutation p.A64S 0.07 tolerated(1) benign(0.014) TCGA-CV-A45W-01 11 17743105 17743105 T A MYOD1 3'UTR 0.15 TCGA-CV-A45W-01 11 18723412 18723412 C T TMEM86A Silent p.I193I 0.06 TCGA-CV-A45W-01 11 18765618 18765618 C A PTPN5 Missense_Mutation p.G76C 0.10 tolerated_low_confidence(0.13) possibly_damaging(0.681) TCGA-CV-A45W-01 11 22249073 22249073 G A ANO5 Missense_Mutation p.E197K 0.08 tolerated(0.07) probably_damaging(0.997) TCGA-CV-A45W-01 11 36680588 36680588 A T C11orf74 Missense_Mutation p.Q173L 0.17 deleterious(0) probably_damaging(0.951) TCGA-CV-A45W-01 11 40137716 40137716 G A LRRC4C Missense_Mutation p.R43W 0.18 deleterious(0.03) possibly_damaging(0.897) TCGA-CV-A45W-01 11 47200530 47200530 G A PACSIN3 Missense_Mutation p.R318W 0.17 deleterious(0.01) possibly_damaging(0.857) TCGA-CV-A45W-01 11 47786823 47786823 T C FNBP4 Silent p.T104T 0.12 TCGA-CV-A45W-01 11 4903750 4903750 C A OR51T1 Nonsense_Mutation p.Y234* 0.07 TCGA-CV-A45W-01 11 4903751 4903751 C A OR51T1 Missense_Mutation p.L235M 0.07 deleterious(0.04) benign(0.269) TCGA-CV-A45W-01 11 5364294 5364294 A C OR51B5 Missense_Mutation p.V154G 0.07 deleterious(0) possibly_damaging(0.752) TCGA-CV-A45W-01 11 5364327 5364327 C A OR51B5 Missense_Mutation p.G143V 0.07 deleterious(0.01) possibly_damaging(0.661) TCGA-CV-A45W-01 11 5537461 5537461 C A UBQLNL Missense_Mutation p.V71L 0.07 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 11 55761194 55761194 T A OR5F1 Missense_Mutation p.N303I 0.08 deleterious(0.01) benign(0.01) TCGA-CV-A45W-01 11 55761531 55761531 C A OR5F1 Missense_Mutation p.D191Y 0.15 deleterious(0) probably_damaging(0.928) TCGA-CV-A45W-01 11 55873016 55873016 G T OR8H2 Missense_Mutation p.L166F 0.18 deleterious(0.01) possibly_damaging(0.651) TCGA-CV-A45W-01 11 55890519 55890519 C A OR8H3 Missense_Mutation p.T224N 0.09 tolerated(0.06) benign(0.182) TCGA-CV-A45W-01 11 55944461 55944461 A C OR5J2 Missense_Mutation p.Y123S 0.13 deleterious(0) probably_damaging(0.918) TCGA-CV-A45W-01 11 56310244 56310244 G - OR5M11 Frame_Shift_Del p.R164Afs*2 0.10 TCGA-CV-A45W-01 11 57003435 57003435 C T APLNR Silent p.S348S 0.11 TCGA-CV-A45W-01 11 58207293 58207293 A - OR5B12 Frame_Shift_Del p.F111Sfs*24 0.15 TCGA-CV-A45W-01 11 59224983 59224983 G T OR4D6 Missense_Mutation p.V184L 0.11 tolerated(0.24) benign(0.058) TCGA-CV-A45W-01 11 59620758 59620758 G C TCN1 Missense_Mutation p.I386M 0.10 deleterious(0) probably_damaging(0.94) TCGA-CV-A45W-01 11 59812145 59812145 T A OOSP2 Missense_Mutation p.V82E 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-CV-A45W-01 11 60292741 60292741 T A MS4A13 Missense_Mutation p.L83Q 0.18 deleterious(0) probably_damaging(0.994) TCGA-CV-A45W-01 11 61404303 61404303 C T RPLP0P2 RNA 0.12 TCGA-CV-A45W-01 11 62124476 62124476 G A ASRGL1 Silent p.L117L 0.09 TCGA-CV-A45W-01 11 64054205 64054205 C A GPR137 Missense_Mutation p.A128D 0.15 deleterious(0) probably_damaging(0.994) TCGA-CV-A45W-01 11 64067024 64067024 C A KCNK4 Silent p.A336A 0.15 TCGA-CV-A45W-01 11 64597448 64597448 G A CDC42BPG Silent p.S1154S 0.07 TCGA-CV-A45W-01 11 6477633 6477633 G A TRIM3 Silent p.P441P 0.12 TCGA-CV-A45W-01 11 65367018 65367019 GC - MAP3K11 Frame_Shift_Del p.P685Lfs*46 0.13 TCGA-CV-A45W-01 11 66639214 66639214 C A PC Missense_Mutation p.G89C 0.25 deleterious(0) probably_damaging(0.996) TCGA-CV-A45W-01 11 67431900 67431900 G A ALDH3B2 Silent p.P280P 0.11 TCGA-CV-A45W-01 11 6806472 6806472 C A OR2AG1 Silent p.L68L 0.10 TCGA-CV-A45W-01 11 73849780 73849780 T C C2CD3 Missense_Mutation p.K314E 0.06 deleterious(0.01) probably_damaging(0.952) TCGA-CV-A45W-01 11 76257309 76257309 G A C11orf30 Missense_Mutation p.A1248T 0.13 tolerated_low_confidence(0.23) probably_damaging(0.956) TCGA-CV-A45W-01 11 8494769 8494769 C A STK33 Missense_Mutation p.G94C 0.10 deleterious(0.04) benign(0.052) TCGA-CV-A45W-01 11 89059775 89059775 C T NOX4 3'UTR 0.23 TCGA-CV-A45W-01 11 8959117 8959117 A C ASCL3 3'Flank 0.24 TCGA-CV-A45W-01 11 92531674 92531674 C A FAT3 Missense_Mutation p.A1832E 0.21 possibly_damaging(0.904) TCGA-CV-A45W-01 11 92531676 92531676 A T FAT3 Missense_Mutation p.I1833F 0.21 probably_damaging(0.939) TCGA-CV-A45W-01 11 92533905 92533905 G A FAT3 Missense_Mutation p.D2576N 0.19 probably_damaging(1) TCGA-CV-A45W-01 11 93468358 93468358 T C KIAA1731 3'Flank 0.25 TCGA-CV-A45W-01 12 1005293 1005293 A G WNK1 Silent p.A1880A 0.08 TCGA-CV-A45W-01 12 106772047 106772047 G A POLR3B Missense_Mutation p.G167S 0.18 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 12 10999835 10999835 C A PRR4 Missense_Mutation p.G78C 0.05 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-CV-A45W-01 12 118619223 118619223 C T TAOK3 Missense_Mutation p.E507K 0.07 deleterious(0) probably_damaging(0.931) TCGA-CV-A45W-01 12 132547186 132547186 A G EP400 Silent p.P2758P 0.12 TCGA-CV-A45W-01 12 133363311 133363311 T A GOLGA3 Missense_Mutation p.K958N 0.19 tolerated(0.06) benign(0.36) TCGA-CV-A45W-01 12 21011481 21011481 C T LST3 Missense_Mutation p.S112F 0.15 deleterious(0) possibly_damaging(0.74) TCGA-CV-A45W-01 12 29464014 29464014 C T FAR2 Silent p.D274D 0.08 TCGA-CV-A45W-01 12 319115 319115 G A SLC6A12 Missense_Mutation p.P13L 0.12 deleterious(0.02) benign(0.074) TCGA-CV-A45W-01 12 34175678 34175678 C T ALG10 Silent p.Y48Y 0.08 TCGA-CV-A45W-01 12 39745659 39745659 G A KIF21A Silent p.D531D 0.09 TCGA-CV-A45W-01 12 47182395 47182395 A G SLC38A4 Silent p.F42F 0.10 TCGA-CV-A45W-01 12 4736094 4736094 G A AKAP3 Silent p.V658V 0.07 TCGA-CV-A45W-01 12 4737172 4737172 G C AKAP3 Missense_Mutation p.S299C 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 12 49723237 49723237 G T TROAP Missense_Mutation p.W388C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 12 52789977 52789977 G T KRT82 Missense_Mutation p.Q370K 0.10 deleterious(0.02) benign(0.021) TCGA-CV-A45W-01 12 52942485 52942485 G A KRT71 Silent p.A271A 0.10 TCGA-CV-A45W-01 12 53189270 53189270 T G KRT3 Missense_Mutation p.E186A 0.25 deleterious(0.01) possibly_damaging(0.885) TCGA-CV-A45W-01 12 54688989 54688989 T A NFE2 Missense_Mutation p.Q15L 0.08 tolerated(0.78) benign(0) TCGA-CV-A45W-01 12 56333089 56333089 G T DGKA Missense_Mutation p.M198I 0.19 deleterious(0.03) benign(0.006) TCGA-CV-A45W-01 12 56663953 56663953 C G COQ10A Missense_Mutation p.S199C 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 12 57532247 57532247 A T LRP1 Nonsense_Mutation p.K25* 0.08 TCGA-CV-A45W-01 12 57858560 57858560 C T GLI1 Missense_Mutation p.R100C 0.07 deleterious(0) possibly_damaging(0.88) TCGA-CV-A45W-01 12 6709540 6709540 A T CHD4 Missense_Mutation p.V362E 0.12 tolerated(1) benign(0) TCGA-CV-A45W-01 12 70209175 70209175 G C RAB3IP Missense_Mutation p.L460F 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A45W-01 12 7640477 7640477 C T CD163 Missense_Mutation p.E543K 0.14 tolerated(0.07) probably_damaging(1) TCGA-CV-A45W-01 12 81657168 81657168 C A PPFIA2 Missense_Mutation p.S1186I 0.12 deleterious(0) benign(0.058) TCGA-CV-A45W-01 12 8278194 8278194 C T CLEC4A Silent p.T40T 0.43 TCGA-CV-A45W-01 12 85518156 85518156 G T LRRIQ1 Missense_Mutation p.R1289I 0.14 tolerated(0.09) benign(0.051) TCGA-CV-A45W-01 12 93171788 93171788 T A EEA1 Missense_Mutation p.L1274F 0.12 tolerated(0.11) possibly_damaging(0.871) TCGA-CV-A45W-01 12 94653490 94653490 G T PLXNC1 Missense_Mutation p.K1077N 0.19 deleterious(0) probably_damaging(0.996) TCGA-CV-A45W-01 13 100543602 100543602 G A CLYBL Missense_Mutation p.D320N 0.10 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 13 103053968 103053968 T C FGF14 Missense_Mutation p.K21E 0.24 tolerated_low_confidence(0.16) benign(0.001) TCGA-CV-A45W-01 13 107145691 107145691 T C EFNB2 Silent p.S233S 0.19 TCGA-CV-A45W-01 13 113803841 113803841 C G F10 3'UTR 0.07 TCGA-CV-A45W-01 13 20220853 20220853 A C MPHOSPH8 Missense_Mutation p.K214Q 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-A45W-01 13 30854276 30854276 C A KATNAL1 Missense_Mutation p.D83Y 0.25 deleterious(0.04) benign(0.006) TCGA-CV-A45W-01 13 32376514 32376514 G A RXFP2 Missense_Mutation p.G746E 0.22 tolerated_low_confidence(0.11) benign(0.016) TCGA-CV-A45W-01 13 32786436 32786436 C T FRY Silent p.T1533T 0.15 TCGA-CV-A45W-01 13 38237740 38237740 G T TRPC4 Missense_Mutation p.H501N 0.14 deleterious(0) probably_damaging(0.959) TCGA-CV-A45W-01 13 39262895 39262895 G A FREM2 Missense_Mutation p.D472N 0.21 deleterious(0) probably_damaging(0.99) TCGA-CV-A45W-01 13 42486208 42486208 C A VWA8 Missense_Mutation p.G113V 0.09 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 13 45841372 45841372 A T GTF2F2 Missense_Mutation p.E164V 0.24 deleterious(0.02) benign(0.158) TCGA-CV-A45W-01 13 52951826 52951826 C G THSD1 Missense_Mutation p.R760P 0.25 deleterious(0) possibly_damaging(0.865) TCGA-CV-A45W-01 13 52972134 52972134 G T THSD1 Missense_Mutation p.T85K 0.06 tolerated(0.11) benign(0.033) TCGA-CV-A45W-01 13 53616047 53616047 G A OLFM4 Silent p.V120V 0.22 TCGA-CV-A45W-01 13 61987495 61987495 G T PCDH20 Missense_Mutation p.T246N 0.19 tolerated(0.67) benign(0.196) TCGA-CV-A45W-01 13 77792089 77792089 T C MYCBP2 Silent p.G943G 0.14 TCGA-CV-A45W-01 13 88327745 88327745 C A SLITRK5 Silent p.V34V 0.17 TCGA-CV-A45W-01 13 88328918 88328918 C T SLITRK5 Silent p.R425R 0.13 TCGA-CV-A45W-01 14 103369742 103369742 G T TRAF3 Missense_Mutation p.A371S 0.15 tolerated(0.46) benign(0.002) TCGA-CV-A45W-01 14 106815887 106815887 C T IGHV3-33 Silent p.K62K 0.05 TCGA-CV-A45W-01 14 20215695 20215695 G T OR4Q3 Missense_Mutation p.A37S 0.04 tolerated(0.24) benign(0.073) TCGA-CV-A45W-01 14 20389117 20389117 A G OR4K5 Missense_Mutation p.M118V 0.06 deleterious(0.01) benign(0.011) TCGA-CV-A45W-01 14 20389120 20389120 G A OR4K5 Missense_Mutation p.A119T 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 14 20529067 20529067 C A OR4L1 Silent p.T288T 0.07 TCGA-CV-A45W-01 14 22446778 22446778 A T TRAV8-6 5'UTR 0.16 TCGA-CV-A45W-01 14 24642506 24642506 C T REC8 Silent p.S116S 0.42 TCGA-CV-A45W-01 14 25076387 25076387 C T GZMH Missense_Mutation p.G189R 0.05 deleterious(0.01) probably_damaging(1) TCGA-CV-A45W-01 14 44974106 44974106 G T FSCB Silent p.T695T 0.18 TCGA-CV-A45W-01 14 44974743 44974743 G T FSCB Missense_Mutation p.P483H 0.12 tolerated(0.12) probably_damaging(0.979) TCGA-CV-A45W-01 14 45414972 45414973 - A KLHL28 Frame_Shift_Ins p.A54Cfs*17 0.10 TCGA-CV-A45W-01 14 51411043 51411043 C G PYGL Missense_Mutation p.E27Q 0.12 tolerated(0.29) probably_damaging(0.99) TCGA-CV-A45W-01 14 64894130 64894130 C T MTHFD1 Silent p.L401L 0.05 TCGA-CV-A45W-01 14 65241981 65241981 C G SPTB Missense_Mutation p.R1568S 0.09 tolerated(0.61) benign(0.01) TCGA-CV-A45W-01 14 70175525 70175525 A G KIAA0247 Missense_Mutation p.Q197R 0.18 tolerated(0.06) possibly_damaging(0.609) TCGA-CV-A45W-01 14 77978598 77978598 G C SPTLC2 3'UTR 0.09 TCGA-CV-A45W-01 14 90458311 90458311 C T TDP1 Silent p.L473L 0.14 TCGA-CV-A45W-01 14 93813675 93813675 G T COX8C Missense_Mutation p.G21C 0.09 tolerated(0.18) benign(0.283) TCGA-CV-A45W-01 14 94423168 94423168 C A ASB2 Missense_Mutation p.L85F 0.08 tolerated(0.13) benign(0.418) TCGA-CV-A45W-01 14 94914628 94914628 C G SERPINA11 Missense_Mutation p.G162R 0.06 tolerated(0.14) benign(0.224) TCGA-CV-A45W-01 14 95058508 95058508 A C SERPINA5 Missense_Mutation p.N385H 0.14 deleterious(0) probably_damaging(0.994) TCGA-CV-A45W-01 15 102462372 102462372 C T OR4F4 Nonsense_Mutation p.W297* 0.05 TCGA-CV-A45W-01 15 20588691 20588691 A T HERC2P3 RNA 0.07 TCGA-CV-A45W-01 15 22473175 22473175 C T IGHV4OR15-8 Silent p.K32K 0.07 TCGA-CV-A45W-01 15 23812127 23812127 T A MKRN3 Missense_Mutation p.C400S 0.15 deleterious(0) probably_damaging(0.996) TCGA-CV-A45W-01 15 24921062 24921062 C A NPAP1 Silent p.P16P 0.27 TCGA-CV-A45W-01 15 25446281 25446281 A T SNORD115-19 5'Flank 0.15 TCGA-CV-A45W-01 15 25475879 25475879 C A SNORD115-33 5'Flank 0.13 TCGA-CV-A45W-01 15 25924662 25924662 G C ATP10A Silent p.S1442S 0.19 TCGA-CV-A45W-01 15 35162966 35162966 C A AQR Missense_Mutation p.G1252V 0.10 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 15 38990415 38990415 G T C15orf53 Missense_Mutation p.G70V 0.12 deleterious_low_confidence(0) benign(0.193) TCGA-CV-A45W-01 15 41819207 41819207 C A RPAP1 Missense_Mutation p.W602C 0.20 deleterious(0) probably_damaging(0.946) TCGA-CV-A45W-01 15 45059955 45059955 C T TRIM69 Silent p.I496I 0.15 TCGA-CV-A45W-01 15 48056433 48056433 G T SEMA6D Missense_Mutation p.R343L 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 15 48500287 48500287 C A SLC12A1 Missense_Mutation p.P124H 0.12 tolerated(0.14) possibly_damaging(0.528) TCGA-CV-A45W-01 15 52338810 52338810 T C MAPK6 Silent p.I51I 0.14 TCGA-CV-A45W-01 15 54006650 54006650 G A WDR72 Missense_Mutation p.S191L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A45W-01 15 58247337 58247337 A C ALDH1A2 3'UTR 0.11 TCGA-CV-A45W-01 15 72698952 72698952 A T TMEM202 Missense_Mutation p.Q116L 0.15 tolerated(0.06) benign(0.148) TCGA-CV-A45W-01 15 75108779 75108779 C A LMAN1L Nonsense_Mutation p.Y114* 0.13 TCGA-CV-A45W-01 15 77407610 77407610 C A PEAK1 Missense_Mutation p.V1377F 0.07 deleterious(0) benign(0.398) TCGA-CV-A45W-01 15 78217284 78217284 A T RP11-114H24.7 3'Flank 0.10 TCGA-CV-A45W-01 15 84683344 84683344 G T ADAMTSL3 Missense_Mutation p.G1342C 0.09 tolerated(0.05) possibly_damaging(0.656) TCGA-CV-A45W-01 15 89391196 89391197 - G ACAN Frame_Shift_Ins p.V555Gfs*23 0.11 TCGA-CV-A45W-01 15 89760507 89760507 G A RLBP1 Nonsense_Mutation p.R64* 0.17 TCGA-CV-A45W-01 16 15170451 15170451 A G RRN3 Silent p.C274C 0.13 TCGA-CV-A45W-01 16 1748969 1748969 G T HN1L Silent p.P181P 0.17 TCGA-CV-A45W-01 16 18849513 18849513 C A SMG1 Silent p.T2412T 0.12 TCGA-CV-A45W-01 16 19451506 19451506 G T TMC5 Missense_Mutation p.G49V 0.16 tolerated_low_confidence(0.19) benign(0.033) TCGA-CV-A45W-01 16 21652900 21652900 G T IGSF6 Missense_Mutation p.N227K 0.14 tolerated(0.06) benign(0.098) TCGA-CV-A45W-01 16 2235157 2235157 C G CASKIN1 Silent p.R398R 0.23 TCGA-CV-A45W-01 16 23091305 23091305 C A USP31 Missense_Mutation p.C713F 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 16 23707243 23707243 G T ERN2 Missense_Mutation p.R576S 0.09 deleterious(0.03) probably_damaging(0.913) TCGA-CV-A45W-01 16 2482998 2482998 G C CCNF Missense_Mutation p.A70P 0.15 tolerated(0.39) benign(0.029) TCGA-CV-A45W-01 16 25228596 25228596 G A AQP8 Nonsense_Mutation p.W30* 0.09 TCGA-CV-A45W-01 16 2546077 2546077 G A RP11-20I23.1 5'UTR 0.09 TCGA-CV-A45W-01 16 25704371 25704371 C G HS3ST4 Silent p.R211R 0.15 TCGA-CV-A45W-01 16 27367165 27367165 G C IL4R Missense_Mutation p.G236A 0.16 tolerated(0.08) benign(0.221) TCGA-CV-A45W-01 16 27514201 27514201 C G GTF3C1 Missense_Mutation p.R629P 0.16 deleterious(0) probably_damaging(0.995) TCGA-CV-A45W-01 16 2812914 2812914 G T SRRM2 Missense_Mutation p.R795S 0.07 unknown(0) TCGA-CV-A45W-01 16 30774845 30774845 C A RNF40 Missense_Mutation p.T136N 0.16 tolerated(0.39) benign(0.019) TCGA-CV-A45W-01 16 4707252 4707253 - C MGRN1 Frame_Shift_Ins p.K152Qfs*28 0.09 TCGA-CV-A45W-01 16 49671734 49671734 A T ZNF423 Nonsense_Mutation p.C443* 0.14 TCGA-CV-A45W-01 16 65397190 65397190 A C LINC00922 RNA 0.22 TCGA-CV-A45W-01 16 69689631 69689631 C A NFAT5 Nonsense_Mutation p.C375* 0.14 TCGA-CV-A45W-01 16 71101181 71101181 G T HYDIN Intron 0.13 TCGA-CV-A45W-01 16 736745 736745 T A WDR24 Missense_Mutation p.Q444L 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A45W-01 16 74972149 74972149 C A WDR59 Missense_Mutation p.V184L 0.18 tolerated(0.14) benign(0.095) TCGA-CV-A45W-01 16 76486632 76486632 C A CNTNAP4 Nonsense_Mutation p.Y360* 0.18 TCGA-CV-A45W-01 16 89703741 89703741 G A DPEP1 Missense_Mutation p.V241M 0.26 deleterious(0) benign(0.224) TCGA-CV-A45W-01 16 9858458 9858458 C T GRIN2A Silent p.Q981Q 0.11 TCGA-CV-A45W-01 17 12819313 12819313 G T ARHGAP44 Silent p.L124L 0.21 TCGA-CV-A45W-01 17 15498141 15498141 C T RP11-385D13.1 Missense_Mutation p.G900R 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-A45W-01 17 18034650 18034650 T C MYO15A Missense_Mutation p.L1379P 0.17 unknown(0) TCGA-CV-A45W-01 17 1840777 1840777 C T RTN4RL1 Silent p.L113L 0.21 TCGA-CV-A45W-01 17 19843111 19843111 C T AKAP10 Missense_Mutation p.D413N 0.12 tolerated(0.06) possibly_damaging(0.721) TCGA-CV-A45W-01 17 21201752 21201752 G A MAP2K3 Missense_Mutation p.R26Q 0.09 tolerated(0.05) benign(0) TCGA-CV-A45W-01 17 25904583 25904583 G T KSR1 Silent p.T9T 0.19 TCGA-CV-A45W-01 17 26905515 26905515 C A SPAG5 Missense_Mutation p.R1077L 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 17 34072475 34072475 G T GAS2L2 Missense_Mutation p.P681T 0.09 tolerated(0.09) possibly_damaging(0.459) TCGA-CV-A45W-01 17 35992314 35992314 C A DDX52 Silent p.R144R 0.12 TCGA-CV-A45W-01 17 39659320 39659320 C G KRT13 Missense_Mutation p.G256R 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 17 41131448 41131448 C T PTGES3L-AARSD1 Missense_Mutation p.D89N 0.09 deleterious_low_confidence(0.01) benign(0.404) TCGA-CV-A45W-01 17 45361915 45361915 C T ITGB3 Silent p.S156S 0.11 TCGA-CV-A45W-01 17 45368460 45368460 G T ITGB3 Intron 0.17 TCGA-CV-A45W-01 17 45788032 45788032 C T TBKBP1 3'UTR 0.05 TCGA-CV-A45W-01 17 45821647 45821647 C T TBX21 Silent p.N285N 0.08 TCGA-CV-A45W-01 17 4797380 4797380 G A MINK1 Missense_Mutation p.V888I 0.23 tolerated(0.24) possibly_damaging(0.525) TCGA-CV-A45W-01 17 48273984 48273984 A T COL1A1 Silent p.G284G 0.10 TCGA-CV-A45W-01 17 56584607 56584607 C A MTMR4 Missense_Mutation p.D247Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 17 56700249 56700249 T A TEX14 Nonsense_Mutation p.K126* 0.05 TCGA-CV-A45W-01 17 57287405 57287405 T C SMG8 5'UTR 0.11 TCGA-CV-A45W-01 17 57758312 57758312 G T CLTC Nonsense_Mutation p.E987* 0.06 TCGA-CV-A45W-01 17 6329146 6329146 G A AIPL1 Silent p.I263I 0.36 TCGA-CV-A45W-01 17 64059127 64059127 A G CEP112 Missense_Mutation p.I343T 0.22 deleterious(0.05) benign(0.371) TCGA-CV-A45W-01 17 70118979 70118979 A T SOX9 Missense_Mutation p.N184I 0.14 tolerated(0.17) possibly_damaging(0.459) TCGA-CV-A45W-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.20 TCGA-CV-A45W-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.22 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 17 76993495 76993495 G A CANT1 Silent p.P70P 0.24 TCGA-CV-A45W-01 17 7702036 7702036 G T DNAH2 Missense_Mutation p.E2853D 0.10 probably_damaging(0.992) TCGA-CV-A45W-01 17 7702037 7702037 G T DNAH2 Splice_Site p.X2853_splice 0.10 TCGA-CV-A45W-01 17 79205454 79205454 A T ENTHD2 Missense_Mutation p.L247M 0.10 tolerated(0.53) benign(0.391) TCGA-CV-A45W-01 17 79650910 79650910 G C ARL16 5'UTR 0.22 TCGA-CV-A45W-01 17 8159848 8159848 C A PFAS Silent p.I276I 0.20 TCGA-CV-A45W-01 18 13621215 13621215 G C LDLRAD4 Missense_Mutation p.R94P 0.07 deleterious(0.01) possibly_damaging(0.905) TCGA-CV-A45W-01 18 28725621 28725621 G C DSC1 Missense_Mutation p.P298A 0.09 deleterious(0.05) probably_damaging(1) TCGA-CV-A45W-01 18 30260292 30260292 T C KLHL14 Splice_Site p.X477_splice 0.10 TCGA-CV-A45W-01 18 31538379 31538379 G C NOL4 Missense_Mutation p.P354A 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 18 42281446 42281446 G C SETBP1 Silent p.G45G 0.09 TCGA-CV-A45W-01 18 44561303 44561303 G T TCEB3B Silent p.G111G 0.13 TCGA-CV-A45W-01 18 51052998 51052998 C A DCC Missense_Mutation p.P1375T 0.14 tolerated(0.13) benign(0.043) TCGA-CV-A45W-01 18 51052999 51052999 C A DCC Missense_Mutation p.P1375H 0.14 tolerated(0.54) possibly_damaging(0.778) TCGA-CV-A45W-01 18 52571553 52571553 C A CCDC68 3'UTR 0.09 TCGA-CV-A45W-01 18 55103312 55103312 G C ONECUT2 Missense_Mutation p.E122Q 0.27 tolerated(0.13) possibly_damaging(0.904) TCGA-CV-A45W-01 18 59195439 59195439 C G CDH20 Silent p.T419T 0.15 TCGA-CV-A45W-01 18 61018124 61018125 - A KDSR Frame_Shift_Ins p.M202Ifs*7 0.12 TCGA-CV-A45W-01 18 641463 641463 G A CLUL1 Silent p.K377K 0.10 TCGA-CV-A45W-01 18 65180863 65180863 C A DSEL Missense_Mutation p.G338V 0.12 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 18 77108131 77108131 G A ATP9B Splice_Site p.X947_splice 0.10 TCGA-CV-A45W-01 18 8244165 8244165 G A PTPRM Missense_Mutation p.E804K 0.08 deleterious(0.01) possibly_damaging(0.626) TCGA-CV-A45W-01 19 10488920 10488920 C A TYK2 Nonsense_Mutation p.E55* 0.15 TCGA-CV-A45W-01 19 10488921 10488921 C A TYK2 Missense_Mutation p.E54D 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 19 11132537 11132537 T G SMARCA4 Missense_Mutation p.L918R 0.18 probably_damaging(0.997) TCGA-CV-A45W-01 19 13414638 13414638 C T CACNA1A Missense_Mutation p.V683M 0.17 probably_damaging(0.987) TCGA-CV-A45W-01 19 14150441 14150441 C G IL27RA Missense_Mutation p.L114V 0.09 tolerated(0.07) benign(0.342) TCGA-CV-A45W-01 19 1460307 1460307 C A APC2 Missense_Mutation p.D477E 0.17 possibly_damaging(0.87) TCGA-CV-A45W-01 19 14640463 14640463 T A TECR 5'UTR 0.20 TCGA-CV-A45W-01 19 15295128 15295128 C A NOTCH3 Missense_Mutation p.Q848H 0.22 deleterious(0.02) possibly_damaging(0.722) TCGA-CV-A45W-01 19 17283670 17283670 G T MYO9B Missense_Mutation p.V680L 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-CV-A45W-01 19 19338428 19338428 G T NCAN Missense_Mutation p.A667S 0.06 tolerated(0.37) benign(0.003) TCGA-CV-A45W-01 19 22155727 22155727 G T ZNF208 Missense_Mutation p.N703K 0.08 tolerated(0.82) benign(0.027) TCGA-CV-A45W-01 19 23544294 23544294 C T ZNF91 Missense_Mutation p.G496D 0.13 deleterious(0.02) probably_damaging(0.962) TCGA-CV-A45W-01 19 30936587 30936587 G C ZNF536 Missense_Mutation p.Q706H 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-CV-A45W-01 19 31769440 31769440 T A TSHZ3 Missense_Mutation p.K420I 0.29 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 19 33697258 33697258 C T LRP3 Nonsense_Mutation p.Q528* 0.22 TCGA-CV-A45W-01 19 35517044 35517044 G C GRAMD1A Nonstop_Mutation p.*725Sext*69 0.12 TCGA-CV-A45W-01 19 36041511 36041511 G T ATP4A 3'UTR 0.10 TCGA-CV-A45W-01 19 38877111 38877111 G A GGN Missense_Mutation p.A264V 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-A45W-01 19 3938600 3938600 G C NMRK2 Splice_Site p.X56_splice 0.20 TCGA-CV-A45W-01 19 39688732 39688732 C T NCCRP1 Missense_Mutation p.T126I 0.11 tolerated(0.15) possibly_damaging(0.577) TCGA-CV-A45W-01 19 40419914 40419914 G A FCGBP Missense_Mutation p.A1027V 0.07 possibly_damaging(0.877) TCGA-CV-A45W-01 19 40433612 40433612 G A FCGBP Silent p.P219P 0.16 TCGA-CV-A45W-01 19 42224010 42224010 G A CEACAM5 Missense_Mutation p.G552S 0.09 tolerated(0.08) probably_damaging(0.947) TCGA-CV-A45W-01 19 44536837 44536837 G T ZNF222 Missense_Mutation p.G377V 0.10 deleterious(0) possibly_damaging(0.487) TCGA-CV-A45W-01 19 46137675 46137675 C A EML2 Silent p.G279G 0.20 TCGA-CV-A45W-01 19 50386085 50386085 G A TBC1D17 Missense_Mutation p.R288H 0.09 tolerated(0.09) benign(0.001) TCGA-CV-A45W-01 19 50386922 50386922 G A TBC1D17 Missense_Mutation p.R349H 0.10 deleterious(0.02) benign(0.262) TCGA-CV-A45W-01 19 50926091 50926091 G C SPIB Missense_Mutation p.D46H 0.12 tolerated(0.12) benign(0.166) TCGA-CV-A45W-01 19 51330362 51330362 G T KLK15 Missense_Mutation p.Q85K 0.09 deleterious(0.02) possibly_damaging(0.543) TCGA-CV-A45W-01 19 51981922 51981922 G T CEACAM18 Missense_Mutation p.S70I 0.12 deleterious(0) possibly_damaging(0.809) TCGA-CV-A45W-01 19 5211644 5211644 C G PTPRS Missense_Mutation p.E1731Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 19 5244023 5244023 T G PTPRS Missense_Mutation p.T487P 0.26 deleterious(0) probably_damaging(0.995) TCGA-CV-A45W-01 19 53770278 53770278 T A VN1R4 Missense_Mutation p.Q214L 0.27 deleterious(0.01) possibly_damaging(0.807) TCGA-CV-A45W-01 19 53912831 53912831 G C ZNF765 3'UTR 0.27 TCGA-CV-A45W-01 19 54224374 54224374 C G MIR517B RNA 0.23 TCGA-CV-A45W-01 19 54244590 54244590 T C MIR517C RNA 0.07 TCGA-CV-A45W-01 19 54297342 54297342 C A NLRP12 Silent p.A1049A 0.07 TCGA-CV-A45W-01 19 55147977 55147977 G C LILRB1 Silent p.V562V 0.09 TCGA-CV-A45W-01 19 55340877 55340877 C A KIR3DL1 Silent p.L354L 0.10 TCGA-CV-A45W-01 19 56515259 56515259 C T NLRP5 Silent p.F80F 0.08 TCGA-CV-A45W-01 19 57328519 57328521 GGC AA PEG3 Frame_Shift_Del p.S430Ifs*2 0.15 TCGA-CV-A45W-01 19 58639352 58639352 T A ZNF329 Missense_Mutation p.R507W 0.07 deleterious(0) possibly_damaging(0.885) TCGA-CV-A45W-01 19 6416879 6416879 A C KHSRP Silent p.G399G 0.18 TCGA-CV-A45W-01 19 6903881 6903881 G T EMR1 Missense_Mutation p.S241I 0.07 deleterious(0) probably_damaging(0.934) TCGA-CV-A45W-01 19 7619586 7619586 G T PNPLA6 Missense_Mutation p.D881Y 0.07 deleterious(0) possibly_damaging(0.784) TCGA-CV-A45W-01 19 7688636 7688636 T A XAB2 Missense_Mutation p.H367L 0.18 tolerated(0.17) benign(0.001) TCGA-CV-A45W-01 19 8367821 8367821 C A CD320 Silent p.G182G 0.09 TCGA-CV-A45W-01 19 9068843 9068843 G A MUC16 Silent p.N6201N 0.15 TCGA-CV-A45W-01 19 9069845 9069845 A G MUC16 Silent p.P5867P 0.22 TCGA-CV-A45W-01 19 9677154 9677154 C A ZNF121 Missense_Mutation p.R212L 0.20 tolerated(0.65) benign(0.055) TCGA-CV-A45W-01 1 111957433 111957433 G T OVGP1 Missense_Mutation p.P564T 0.09 tolerated_low_confidence(0.08) benign(0.014) TCGA-CV-A45W-01 1 112020707 112020707 G T C1orf162 Missense_Mutation p.D144Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 1 113232688 113232688 C G MOV10 Silent p.T268T 0.19 TCGA-CV-A45W-01 1 115468961 115468961 G C SYCP1 Missense_Mutation p.E621D 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 1 1233269 1233269 C A ACAP3 Missense_Mutation p.W354L 0.14 deleterious(0) probably_damaging(0.994) TCGA-CV-A45W-01 1 12557595 12557595 G T VPS13D Missense_Mutation p.G4235V 0.17 possibly_damaging(0.801) TCGA-CV-A45W-01 1 12855707 12855707 C T PRAMEF1 Silent p.Y329Y 0.04 TCGA-CV-A45W-01 1 153580603 153580603 C T S100A16 Missense_Mutation p.E9K 0.09 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 1 154226498 154226498 C A UBAP2L Missense_Mutation p.S596Y 0.09 deleterious(0) unknown(0) TCGA-CV-A45W-01 1 156933337 156933337 T C ARHGEF11 Missense_Mutation p.Y338C 0.10 tolerated(0.15) benign(0.049) TCGA-CV-A45W-01 1 157665964 157665964 C A FCRL3 Missense_Mutation p.R333I 0.12 tolerated(0.12) benign(0.275) TCGA-CV-A45W-01 1 157801689 157801689 G A CD5L 3'UTR 0.37 TCGA-CV-A45W-01 1 158224881 158224881 G C CD1A Missense_Mutation p.K22N 0.12 deleterious(0.03) benign(0.075) TCGA-CV-A45W-01 1 158225912 158225912 G A CD1A Nonsense_Mutation p.W148* 0.14 TCGA-CV-A45W-01 1 158300693 158300693 C G CD1B Missense_Mutation p.G74A 0.13 deleterious(0.02) probably_damaging(0.911) TCGA-CV-A45W-01 1 160162614 160162614 A T CASQ1 Missense_Mutation p.D101V 0.08 deleterious(0.03) benign(0.441) TCGA-CV-A45W-01 1 160784328 160784328 G A LY9 Silent p.L283L 0.12 TCGA-CV-A45W-01 1 160811021 160811021 C T CD244 Missense_Mutation p.D217N 0.13 tolerated(0.06) benign(0.09) TCGA-CV-A45W-01 1 16475422 16475422 C A EPHA2 Nonsense_Mutation p.E92* 0.17 TCGA-CV-A45W-01 1 168698251 168698251 C A DPT Missense_Mutation p.Q54H 0.14 deleterious(0.01) possibly_damaging(0.693) TCGA-CV-A45W-01 1 169391364 169391364 T A CCDC181 Missense_Mutation p.N102I 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-CV-A45W-01 1 170015866 170015866 T A KIFAP3 Silent p.S102S 0.25 TCGA-CV-A45W-01 1 175046646 175046646 C A TNN Missense_Mutation p.P31H 0.14 tolerated(0.27) benign(0.002) TCGA-CV-A45W-01 1 175360426 175360426 G A TNR Missense_Mutation p.T502I 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 1 175375398 175375398 C A TNR Silent p.L151L 0.24 TCGA-CV-A45W-01 1 175375691 175375691 A T TNR Missense_Mutation p.Y54N 0.07 tolerated_low_confidence(0.31) benign(0.156) TCGA-CV-A45W-01 1 176760565 176760565 C A PAPPA2 Missense_Mutation p.P1656H 0.27 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 1 177909766 177909766 C T SEC16B Silent p.A702A 0.14 TCGA-CV-A45W-01 1 177928091 177928091 C T SEC16B Missense_Mutation p.D340N 0.23 deleterious(0.02) probably_damaging(1) TCGA-CV-A45W-01 1 177937011 177937011 C G SEC16B Missense_Mutation p.V36L 0.12 tolerated(0.68) benign(0.002) TCGA-CV-A45W-01 1 179033207 179033207 G C FAM20B Missense_Mutation p.R240S 0.14 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 1 18023700 18023700 G C ARHGEF10L Missense_Mutation p.R1222P 0.12 deleterious(0.01) possibly_damaging(0.796) TCGA-CV-A45W-01 1 186062643 186062643 A C HMCN1 Missense_Mutation p.K3346N 0.11 probably_damaging(0.997) TCGA-CV-A45W-01 1 197326133 197326133 T C CRB1 Silent p.P387P 0.27 TCGA-CV-A45W-01 1 201356286 201356286 G A LAD1 Missense_Mutation p.A68V 0.15 tolerated(0.09) benign(0.2) TCGA-CV-A45W-01 1 203834232 203834232 T A SNRPE Missense_Mutation p.S70T 0.14 tolerated(0.61) benign(0.004) TCGA-CV-A45W-01 1 207697314 207697314 C A CR1 Silent p.A282A 0.30 TCGA-CV-A45W-01 1 207963626 207963627 - AAGT CD46 Intron 0.12 TCGA-CV-A45W-01 1 209933598 209933598 G C TRAF3IP3 Missense_Mutation p.E72Q 0.10 tolerated(0.28) benign(0.086) TCGA-CV-A45W-01 1 214209100 214209100 G T PROX1 Missense_Mutation p.V713F 0.28 deleterious(0) probably_damaging(0.949) TCGA-CV-A45W-01 1 220364471 220364471 C T RAB3GAP2 Missense_Mutation p.E476K 0.06 deleterious(0) probably_damaging(0.991) TCGA-CV-A45W-01 1 22418000 22418000 T G CDC42 Missense_Mutation p.V189G 0.19 deleterious_low_confidence(0.03) benign(0) TCGA-CV-A45W-01 1 225152204 225152204 A G DNAH14 Missense_Mutation p.R131G 0.16 deleterious(0.02) benign(0.4) TCGA-CV-A45W-01 1 229738406 229738406 C G TAF5L Missense_Mutation p.D170H 0.06 deleterious(0) possibly_damaging(0.907) TCGA-CV-A45W-01 1 230401079 230401079 G A GALNT2 Missense_Mutation p.G469E 0.16 deleterious(0.04) probably_damaging(1) TCGA-CV-A45W-01 1 231339746 231339746 G T TRIM67 Silent p.G556G 0.09 TCGA-CV-A45W-01 1 232619601 232619624 GATCAAGGAATTCTTCAAAAGCTG - SIPA1L2 In_Frame_Del p.P632_D639del 0.16 TCGA-CV-A45W-01 1 23383993 23383993 G T KDM1A Missense_Mutation p.R336L 0.12 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 1 237754126 237754126 A C RYR2 Missense_Mutation p.N1332H 0.06 benign(0) TCGA-CV-A45W-01 1 237777748 237777748 G T RYR2 Nonsense_Mutation p.E1774* 0.19 TCGA-CV-A45W-01 1 240255953 240255953 G T FMN2 Missense_Mutation p.D182Y 0.06 unknown(0) TCGA-CV-A45W-01 1 248084547 248084547 G T OR2T8 Silent p.V76V 0.13 TCGA-CV-A45W-01 1 248085145 248085145 T G OR2T8 Missense_Mutation p.Y276D 0.07 deleterious(0) probably_damaging(0.996) TCGA-CV-A45W-01 1 248129316 248129316 C T OR2AK2 Missense_Mutation p.A228V 0.23 tolerated(0.99) possibly_damaging(0.791) TCGA-CV-A45W-01 1 248308798 248308798 G C OR2M5 Missense_Mutation p.V117L 0.04 tolerated(0.95) benign(0.008) TCGA-CV-A45W-01 1 248458275 248458275 C T OR2T12 Silent p.V202V 0.08 TCGA-CV-A45W-01 1 248486989 248486989 G T OR2M7 Missense_Mutation p.N294K 0.19 deleterious(0) probably_damaging(0.918) TCGA-CV-A45W-01 1 248790290 248790290 T A OR2T11 Missense_Mutation p.Q47L 0.05 tolerated(0.12) benign(0.05) TCGA-CV-A45W-01 1 248813816 248813816 C A OR2T27 Missense_Mutation p.V124L 0.18 deleterious(0.01) benign(0.09) TCGA-CV-A45W-01 1 248814116 248814116 G A OR2T27 Missense_Mutation p.P24S 0.13 tolerated(0.49) benign(0.004) TCGA-CV-A45W-01 1 28282338 28282338 C G SMPDL3B Missense_Mutation p.H278Q 0.10 tolerated(0.18) benign(0.219) TCGA-CV-A45W-01 1 2938651 2938651 C A ACTRT2 Missense_Mutation p.P134H 0.08 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 1 33407999 33407999 C A RNF19B Silent p.L489L 0.15 TCGA-CV-A45W-01 1 34180272 34180272 G C CSMD2 Silent p.P1067P 0.30 TCGA-CV-A45W-01 1 40768857 40768857 C T COL9A2 Missense_Mutation p.G517S 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-CV-A45W-01 1 42048654 42048654 C - HIVEP3 Frame_Shift_Del p.E605Dfs*32 0.14 TCGA-CV-A45W-01 1 47838671 47838671 C A CMPK1 Missense_Mutation p.F121L 0.10 deleterious(0) possibly_damaging(0.845) TCGA-CV-A45W-01 1 67880878 67880878 G A SERBP1 Missense_Mutation p.R381C 0.13 deleterious(0.01) benign(0.009) TCGA-CV-A45W-01 1 68943583 68943583 C A DEPDC1 Nonsense_Mutation p.E729* 0.14 TCGA-CV-A45W-01 1 75672399 75672399 C T SLC44A5 Missense_Mutation p.D685N 0.14 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 1 89474698 89474698 C T GBP3 Missense_Mutation p.E531K 0.07 tolerated(0.19) benign(0.03) TCGA-CV-A45W-01 1 89474719 89474719 C T GBP3 Missense_Mutation p.E524K 0.12 deleterious(0.03) probably_damaging(0.91) TCGA-CV-A45W-01 1 89474740 89474740 C T GBP3 Missense_Mutation p.E517K 0.14 tolerated(0.57) benign(0.219) TCGA-CV-A45W-01 1 89728399 89728399 G T GBP5 Missense_Mutation p.Q478K 0.22 tolerated(0.86) benign(0.016) TCGA-CV-A45W-01 1 98060712 98060712 T A DPYD Missense_Mutation p.E287D 0.10 tolerated(0.33) benign(0.001) TCGA-CV-A45W-01 20 13463984 13463984 C G TASP1 Missense_Mutation p.G292A 0.14 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 20 19673993 19673993 G A SLC24A3 Nonsense_Mutation p.W472* 0.08 TCGA-CV-A45W-01 20 24929930 24929930 T A CST7 5'UTR 0.18 TCGA-CV-A45W-01 20 24929931 24929931 C A CST7 5'UTR 0.18 TCGA-CV-A45W-01 20 25203553 25203553 G A ENTPD6 Silent p.K375K 0.14 TCGA-CV-A45W-01 20 33148763 33148763 G C PIGU Nonsense_Mutation p.Y405* 0.14 TCGA-CV-A45W-01 20 34810251 34810251 G T EPB41L1 Missense_Mutation p.V858L 0.10 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 20 45194884 45194884 G A SLC13A3 Missense_Mutation p.P493L 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 20 49508324 49508324 G A ADNP Missense_Mutation p.P976L 0.07 deleterious_low_confidence(0.02) benign(0.025) TCGA-CV-A45W-01 20 50407722 50407722 G T SALL4 Missense_Mutation p.Q434K 0.17 deleterious(0.02) benign(0.195) TCGA-CV-A45W-01 20 51872767 51872767 C T TSHZ2 Missense_Mutation p.P924S 0.07 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 20 55012586 55012586 G T CASS4 Missense_Mutation p.D135Y 0.12 deleterious(0.04) benign(0.055) TCGA-CV-A45W-01 21 16339085 16339085 C A NRIP1 Missense_Mutation p.D477Y 0.25 deleterious(0.04) benign(0.444) TCGA-CV-A45W-01 21 22656613 22656613 G - NCAM2 Frame_Shift_Del p.L78* 0.18 TCGA-CV-A45W-01 21 30255315 30255315 A C N6AMT1 Silent p.A71A 0.16 TCGA-CV-A45W-01 21 32253745 32253745 A C KRTAP11-1 Missense_Mutation p.D33E 0.12 tolerated(0.33) benign(0.026) TCGA-CV-A45W-01 21 32595908 32595908 C G TIAM1 Splice_Site p.X604_splice 0.26 TCGA-CV-A45W-01 21 41165460 41165460 G A IGSF5 Splice_Site p.X350_splice 0.18 TCGA-CV-A45W-01 21 41668079 41668079 C A DSCAM Missense_Mutation p.Q695H 0.18 deleterious(0) probably_damaging(0.958) TCGA-CV-A45W-01 21 43833586 43833586 C T UBASH3A Silent p.S207S 0.18 TCGA-CV-A45W-01 21 45710865 45710865 G T AIRE Intron 0.12 TCGA-CV-A45W-01 21 45786768 45786768 G T TRPM2 Silent p.R185R 0.11 TCGA-CV-A45W-01 21 46057273 46057273 C T KRTAP10-10 5'UTR 0.17 TCGA-CV-A45W-01 21 46685618 46685618 G A POFUT2 Intron 0.17 TCGA-CV-A45W-01 22 19511170 19511170 C G CLDN5 Silent p.P288P 0.08 TCGA-CV-A45W-01 22 22937305 22937305 G C IGLV3-32 Missense_Mutation p.Q41H 0.06 deleterious(0.01) benign(0.03) TCGA-CV-A45W-01 22 31283464 31283464 C T OSBP2 Missense_Mutation p.R387W 0.14 deleterious(0) probably_damaging(0.987) TCGA-CV-A45W-01 22 38046214 38046214 G T SH3BP1 Missense_Mutation p.V458F 0.19 deleterious(0) probably_damaging(0.938) TCGA-CV-A45W-01 22 42418311 42418311 T A WBP2NL Nonsense_Mutation p.Y155* 0.13 TCGA-CV-A45W-01 22 42607617 42607617 G A TCF20 Missense_Mutation p.P1232L 0.10 benign(0.036) TCGA-CV-A45W-01 2 103347528 103347528 C A MFSD9 Splice_Site p.X85_splice 0.12 TCGA-CV-A45W-01 2 112786315 112786315 G - MERTK Frame_Shift_Del p.E960Rfs*39 0.11 TCGA-CV-A45W-01 2 113940308 113940308 G A PSD4 Missense_Mutation p.R92Q 0.12 deleterious_low_confidence(0.03) benign(0) TCGA-CV-A45W-01 2 11718489 11718489 C T GREB1 Missense_Mutation p.T235M 0.11 deleterious(0.02) benign(0.013) TCGA-CV-A45W-01 2 11729026 11729026 C A GREB1 Silent p.L438L 0.08 TCGA-CV-A45W-01 2 120125881 120125881 G A DBI Missense_Mutation p.E104K 0.06 tolerated(0.07) benign(0.173) TCGA-CV-A45W-01 2 120362332 120362332 C A PCDP1 Missense_Mutation p.H292Q 0.13 tolerated(0.51) benign(0.004) TCGA-CV-A45W-01 2 120362333 120362333 C A PCDP1 Silent p.R293R 0.14 TCGA-CV-A45W-01 2 120620118 120620118 G T PTPN4 Missense_Mutation p.D49Y 0.16 deleterious(0.01) benign(0.395) TCGA-CV-A45W-01 2 122514814 122514814 A C TSN Splice_Site p.X23_splice 0.11 TCGA-CV-A45W-01 2 125521323 125521323 G A CNTNAP5 Missense_Mutation p.R769K 0.15 deleterious(0) possibly_damaging(0.521) TCGA-CV-A45W-01 2 128396883 128396883 G A LIMS2 Silent p.P357P 0.06 TCGA-CV-A45W-01 2 133174975 133174975 C A GPR39 Nonsense_Mutation p.Y120* 0.21 TCGA-CV-A45W-01 2 135891458 135891458 C A RAB3GAP1 Missense_Mutation p.P452T 0.14 deleterious(0.01) probably_damaging(1) TCGA-CV-A45W-01 2 138771667 138771667 T C HNMT Silent p.N282N 0.23 TCGA-CV-A45W-01 2 143790809 143790809 G A KYNU Silent p.L320L 0.14 TCGA-CV-A45W-01 2 152432252 152432252 G A NEB Missense_Mutation p.P5657L 0.16 probably_damaging(1) TCGA-CV-A45W-01 2 152472608 152472608 C A NEB Missense_Mutation p.A3733S 0.19 benign(0.057) TCGA-CV-A45W-01 2 163374654 163374655 - C KCNH7 Frame_Shift_Ins p.F160Vfs*30 0.09 TCGA-CV-A45W-01 2 166744891 166744891 G C TTC21B Missense_Mutation p.H1119Q 0.23 tolerated(1) benign(0.007) TCGA-CV-A45W-01 2 167263029 167263029 C A SCN7A Missense_Mutation p.M1370I 0.19 deleterious(0.03) benign(0.047) TCGA-CV-A45W-01 2 168105908 168105908 C T XIRP2 Missense_Mutation p.S2669F 0.18 possibly_damaging(0.617) TCGA-CV-A45W-01 2 171259392 171259392 G A MYO3B Missense_Mutation p.D722N 0.22 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 2 179449632 179449632 A T TTN Missense_Mutation p.L21579Q 0.07 TCGA-CV-A45W-01 2 179462705 179462705 T C TTN Silent p.R19064R 0.17 TCGA-CV-A45W-01 2 179554032 179554032 G T TTN Missense_Mutation p.P10666T 0.17 TCGA-CV-A45W-01 2 179579989 179579989 G T TTN Missense_Mutation p.P8642T 0.14 TCGA-CV-A45W-01 2 179585325 179585325 G T TTN Missense_Mutation p.Q7722K 0.17 TCGA-CV-A45W-01 2 179599097 179599097 C A TTN Nonsense_Mutation p.E5152* 0.14 TCGA-CV-A45W-01 2 179654192 179654192 A T TTN Silent p.S657S 0.07 TCGA-CV-A45W-01 2 179659889 179659889 C A TTN Silent p.V335V 0.10 TCGA-CV-A45W-01 2 182363382 182363382 A C ITGA4 Silent p.R525R 0.15 TCGA-CV-A45W-01 2 182374391 182374391 G A ITGA4 Missense_Mutation p.V568M 0.08 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 2 185801872 185801872 A G ZNF804A Silent p.K583K 0.10 TCGA-CV-A45W-01 2 188247909 188247909 G A CALCRL Nonsense_Mutation p.Q59* 0.09 TCGA-CV-A45W-01 2 191524250 191524250 G C NAB1 Missense_Mutation p.R116S 0.07 tolerated(0.15) benign(0.445) TCGA-CV-A45W-01 2 192701247 192701247 C G SDPR Missense_Mutation p.R227T 0.08 deleterious(0.04) possibly_damaging(0.861) TCGA-CV-A45W-01 2 197208390 197208390 A C HECW2 Missense_Mutation p.F131V 0.08 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 2 215632324 215632324 T C BARD1 Missense_Mutation p.K484E 0.16 tolerated(0.07) benign(0.364) TCGA-CV-A45W-01 2 219900384 219900384 G A CCDC108 Silent p.P120P 0.18 TCGA-CV-A45W-01 2 228884717 228884717 G A SPHKAP Nonsense_Mutation p.R285* 0.07 TCGA-CV-A45W-01 2 231280994 231280994 A T SP100 5'UTR 0.25 TCGA-CV-A45W-01 2 231738190 231738190 A G ITM2C Missense_Mutation p.Y60C 0.14 tolerated(0.32) benign(0.006) TCGA-CV-A45W-01 2 234355440 234355440 G T DGKD Nonsense_Mutation p.E473* 0.11 TCGA-CV-A45W-01 2 237150052 237150052 C T ASB18 Intron 0.14 TCGA-CV-A45W-01 2 237150053 237150053 C A ASB18 Intron 0.13 TCGA-CV-A45W-01 2 238434404 238434404 C A MLPH Missense_Mutation p.P279H 0.10 deleterious(0) probably_damaging(0.968) TCGA-CV-A45W-01 2 239013294 239013294 C A ESPNL Intron 0.16 TCGA-CV-A45W-01 2 27249222 27249222 G T MAPRE3 3'UTR 0.13 TCGA-CV-A45W-01 2 30987150 30987150 G C CAPN13 Missense_Mutation p.L183V 0.12 deleterious(0) probably_damaging(0.927) TCGA-CV-A45W-01 2 31754488 31754488 C T AL133247.2 Intron 0.13 TCGA-CV-A45W-01 2 33952399 33952399 C A AC009499.1 Intron 0.24 TCGA-CV-A45W-01 2 46602956 46602956 G T EPAS1 Missense_Mutation p.M338I 0.11 tolerated(0.09) benign(0.001) TCGA-CV-A45W-01 2 47389768 47389768 T C CALM2 Missense_Mutation p.D23G 0.14 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-CV-A45W-01 2 50847190 50847190 G T NRXN1 Silent p.V470V 0.30 TCGA-CV-A45W-01 2 63401895 63401895 C T WDPCP Missense_Mutation p.G663E 0.11 tolerated(1) benign(0.001) TCGA-CV-A45W-01 2 68613677 68613677 G T PLEK Missense_Mutation p.R172S 0.25 tolerated(0.59) possibly_damaging(0.835) TCGA-CV-A45W-01 2 68882461 68882461 C A PROKR1 Missense_Mutation p.T312N 0.17 tolerated(0.23) benign(0.094) TCGA-CV-A45W-01 2 7018191 7018191 G A RSAD2 Missense_Mutation p.C87Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 2 70919654 70919654 C G ADD2 Missense_Mutation p.E196Q 0.11 tolerated(0.06) possibly_damaging(0.855) TCGA-CV-A45W-01 2 71913797 71913797 C G DYSF 3'Flank 0.28 TCGA-CV-A45W-01 2 76975852 76975852 G T LRRTM4 Missense_Mutation p.P581Q 0.07 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-CV-A45W-01 2 77745493 77745493 T A LRRTM4 Missense_Mutation p.N501I 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 2 77745716 77745716 C A LRRTM4 Missense_Mutation p.A427S 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-CV-A45W-01 2 77745717 77745717 A T LRRTM4 Silent p.I426I 0.08 TCGA-CV-A45W-01 2 88383887 88383887 C T SMYD1 Missense_Mutation p.R64C 0.15 deleterious(0) probably_damaging(0.963) TCGA-CV-A45W-01 2 88828934 88828934 A G TEX37 Missense_Mutation p.H162R 0.11 tolerated_low_confidence(0.56) benign(0.005) TCGA-CV-A45W-01 2 89512990 89512990 C A IGKV1-27 Missense_Mutation p.G90V 0.13 deleterious(0) probably_damaging(0.995) TCGA-CV-A45W-01 2 95843345 95843345 G T ZNF2 Missense_Mutation p.V51L 0.18 tolerated(0.2) benign(0.014) TCGA-CV-A45W-01 2 96955534 96955534 C A SNRNP200 Intron 0.14 TCGA-CV-A45W-01 2 96961275 96961275 C A SNRNP200 Missense_Mutation p.R598L 0.06 deleterious(0) probably_damaging(0.985) TCGA-CV-A45W-01 2 97368984 97368984 C T LMAN2L 3'Flank 0.14 TCGA-CV-A45W-01 3 101446256 101446256 G T CEP97 Silent p.R72R 0.05 TCGA-CV-A45W-01 3 105456029 105456029 T C CBLB Missense_Mutation p.I353V 0.07 tolerated(0.11) benign(0.355) TCGA-CV-A45W-01 3 109050613 109050613 G T DPPA4 Missense_Mutation p.R120S 0.10 deleterious(0) probably_damaging(0.985) TCGA-CV-A45W-01 3 112642541 112642541 C T CD200R1 Missense_Mutation p.D344N 0.11 tolerated(0.79) benign(0.005) TCGA-CV-A45W-01 3 113795705 113795705 G T QTRTD1 Missense_Mutation p.G233V 0.08 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 3 119331897 119331897 C A PLA1A Missense_Mutation p.A199D 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 3 121209254 121209254 C A POLQ Missense_Mutation p.A842S 0.05 tolerated(0.71) benign(0.014) TCGA-CV-A45W-01 3 127399180 127399180 G T ABTB1 Missense_Mutation p.E433D 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-CV-A45W-01 3 132441249 132441249 G C NPHP3 5'UTR 0.29 TCGA-CV-A45W-01 3 133661523 133661523 C T SLCO2A1 Silent p.P517P 0.06 TCGA-CV-A45W-01 3 134338041 134338041 G A KY Missense_Mutation p.T220I 0.09 deleterious(0.01) benign(0.361) TCGA-CV-A45W-01 3 134885831 134885831 A G EPHB1 Missense_Mutation p.H581R 0.05 tolerated(0.23) benign(0.002) TCGA-CV-A45W-01 3 138738769 138738769 G A PRR23B Silent p.H245H 0.14 TCGA-CV-A45W-01 3 147113908 147113908 G A ZIC4 Missense_Mutation p.T190I 0.10 tolerated(0.1) benign(0.001) TCGA-CV-A45W-01 3 151160962 151160962 A C IGSF10 Missense_Mutation p.S1925A 0.07 deleterious(0.05) probably_damaging(0.994) TCGA-CV-A45W-01 3 153993957 153993957 C T DHX36 3'UTR 0.11 TCGA-CV-A45W-01 3 155303875 155303875 T C PLCH1 Silent p.R181R 0.12 TCGA-CV-A45W-01 3 157160214 157160214 C G PTX3 Missense_Mutation p.P198A 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-CV-A45W-01 3 160804104 160804104 C T B3GALNT1 Missense_Mutation p.D147N 0.14 tolerated(0.05) possibly_damaging(0.666) TCGA-CV-A45W-01 3 161217019 161217019 A T OTOL1 Missense_Mutation p.Q142L 0.32 tolerated(0.23) unknown(0) TCGA-CV-A45W-01 3 16217179 16217179 C A GALNT15 Missense_Mutation p.P174H 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 3 16646799 16646799 C A DAZL 5'Flank 0.14 TCGA-CV-A45W-01 3 180397280 180397280 G T CCDC39 5'UTR 0.32 TCGA-CV-A45W-01 3 184041346 184041346 C T EIF4G1 Nonsense_Mutation p.R754* 0.06 TCGA-CV-A45W-01 3 186974553 186974553 T C MASP1 Missense_Mutation p.T215A 0.06 tolerated(0.31) benign(0.005) TCGA-CV-A45W-01 3 189675690 189675690 C T LEPREL1 3'UTR 0.23 TCGA-CV-A45W-01 3 196215545 196215545 T C RNF168 Missense_Mutation p.Y104C 0.25 tolerated(0.19) benign(0) TCGA-CV-A45W-01 3 196281250 196281250 G A WDR53 Silent p.N303N 0.10 TCGA-CV-A45W-01 3 38945426 38945426 G T SCN11A Missense_Mutation p.T591N 0.25 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 3 424202 424202 G T CHL1 Missense_Mutation p.W675L 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 3 47384244 47384244 G A KLHL18 Missense_Mutation p.S421N 0.16 deleterious(0.02) probably_damaging(0.917) TCGA-CV-A45W-01 3 49455133 49455133 C A AMT Missense_Mutation p.C351F 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 3 65350570 65350570 G A MAGI1 Missense_Mutation p.T1083I 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-CV-A45W-01 3 68466453 68466453 G A FAM19A1 Missense_Mutation p.A48T 0.29 tolerated(0.31) probably_damaging(0.996) TCGA-CV-A45W-01 3 77614132 77614132 C G ROBO2 Silent p.T586T 0.18 TCGA-CV-A45W-01 3 93593056 93593056 A T PROS1 3'UTR 0.06 TCGA-CV-A45W-01 3 9781399 9781399 G A BRPF1 Missense_Mutation p.R439H 0.16 deleterious(0) probably_damaging(0.996) TCGA-CV-A45W-01 4 113483598 113483598 C T C4orf21 Silent p.L1542L 0.21 TCGA-CV-A45W-01 4 114277745 114277745 C A ANK2 Missense_Mutation p.S2657R 0.17 possibly_damaging(0.549) TCGA-CV-A45W-01 4 115792067 115792067 C A NDST4 Missense_Mutation p.D526Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-CV-A45W-01 4 123542011 123542011 A C IL21 Nonsense_Mutation p.Y52* 0.09 TCGA-CV-A45W-01 4 128651609 128651609 C T SLC25A31 5'UTR 0.38 TCGA-CV-A45W-01 4 151388886 151388886 G T LRBA Missense_Mutation p.T2251N 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 4 153249510 153249510 C G FBXW7 Missense_Mutation p.G423A 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-CV-A45W-01 4 155156083 155156083 C T DCHS2 Missense_Mutation p.E2786K 0.09 deleterious(0.01) possibly_damaging(0.685) TCGA-CV-A45W-01 4 155458554 155458554 C A PLRG1 Missense_Mutation p.G457W 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 4 155506784 155506784 C T FGA Silent p.K599K 0.15 TCGA-CV-A45W-01 4 15780132 15780132 T C CD38 Missense_Mutation p.V32A 0.12 tolerated(0.11) benign(0.24) TCGA-CV-A45W-01 4 159894304 159894304 C A C4orf45 Missense_Mutation p.S75I 0.15 deleterious(0) benign(0.01) TCGA-CV-A45W-01 4 160252802 160252802 G T RAPGEF2 Missense_Mutation p.R371S 0.08 tolerated(0.16) possibly_damaging(0.521) TCGA-CV-A45W-01 4 164506925 164506925 C T MARCH1 Silent p.E133E 0.17 TCGA-CV-A45W-01 4 184931158 184931158 G T STOX2 Silent p.L389L 0.14 TCGA-CV-A45W-01 4 187534479 187534479 T - FAT1 Frame_Shift_Del p.T3083Pfs*33 0.15 TCGA-CV-A45W-01 4 20525726 20525726 C A SLIT2 Missense_Mutation p.A455D 0.08 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 4 20599920 20599920 G C SLIT2 Silent p.L1198L 0.05 TCGA-CV-A45W-01 4 20618719 20618719 C A SLIT2 Missense_Mutation p.T1345K 0.11 tolerated(1) benign(0.08) TCGA-CV-A45W-01 4 2178012 2178012 T A POLN Missense_Mutation p.D410V 0.09 tolerated(0.12) benign(0.009) TCGA-CV-A45W-01 4 2321975 2321975 C G ZFYVE28 Missense_Mutation p.G242A 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A45W-01 4 30725738 30725738 A G PCDH7 Silent p.V898V 0.17 TCGA-CV-A45W-01 4 3432301 3432301 A C RGS12 Missense_Mutation p.S1245R 0.17 tolerated(0.53) benign(0.09) TCGA-CV-A45W-01 4 42445638 42445638 C G ATP8A1 Missense_Mutation p.G1023R 0.12 tolerated(0.35) benign(0.003) TCGA-CV-A45W-01 4 42445654 42445654 G C ATP8A1 Silent p.L1017L 0.10 TCGA-CV-A45W-01 4 46252339 46252339 C A GABRA2 Missense_Mutation p.G448W 0.13 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-CV-A45W-01 4 46252503 46252504 - T GABRA2 Frame_Shift_Ins p.T393Nfs*14 0.12 TCGA-CV-A45W-01 4 53265 53265 G T ZNF595 5'UTR 0.06 TCGA-CV-A45W-01 4 69811145 69811145 A C UGT2A3 Missense_Mutation p.V248G 0.07 deleterious(0) possibly_damaging(0.491) TCGA-CV-A45W-01 4 69964264 69964264 C A UGT2B7 Missense_Mutation p.P243H 0.15 deleterious(0.01) benign(0.105) TCGA-CV-A45W-01 4 72631247 72631247 A T GC Silent p.A144A 0.12 TCGA-CV-A45W-01 4 72634065 72634065 C A GC Nonsense_Mutation p.E91* 0.28 TCGA-CV-A45W-01 4 73186517 73186517 T A ADAMTS3 Missense_Mutation p.Q339L 0.12 tolerated(0.06) benign(0.267) TCGA-CV-A45W-01 4 79763573 79763573 A G BMP2K Silent p.L146L 0.10 TCGA-CV-A45W-01 4 96761496 96761496 G T PDHA2 Missense_Mutation p.M65I 0.08 tolerated(0.11) benign(0.004) TCGA-CV-A45W-01 5 100191928 100191928 G A ST8SIA4 Missense_Mutation p.P226S 0.11 possibly_damaging(0.817) TCGA-CV-A45W-01 5 10973560 10973560 G C CTNND2 3'UTR 0.08 TCGA-CV-A45W-01 5 112406805 112406805 C T MCC Silent p.L637L 0.09 TCGA-CV-A45W-01 5 115298804 115298804 C T AQPEP Missense_Mutation p.P164S 0.19 tolerated(0.8) benign(0.026) TCGA-CV-A45W-01 5 131007220 131007220 C A FNIP1 Nonsense_Mutation p.E973* 0.09 TCGA-CV-A45W-01 5 13922416 13922416 C G DNAH5 Missense_Mutation p.D154H 0.18 possibly_damaging(0.861) TCGA-CV-A45W-01 5 140187595 140187595 G - PCDHA4 Frame_Shift_Del p.D276Tfs*14 0.15 TCGA-CV-A45W-01 5 140208346 140208346 G - PCDHA6 Frame_Shift_Del p.G224Afs*12 0.09 TCGA-CV-A45W-01 5 140214112 140214112 C T PCDHA7 Silent p.I48I 0.11 TCGA-CV-A45W-01 5 140221704 140221704 T C PCDHA8 Silent p.A266A 0.24 TCGA-CV-A45W-01 5 140554308 140554308 G A PCDHB7 Missense_Mutation p.S631N 0.05 deleterious_low_confidence(0.02) benign(0.135) TCGA-CV-A45W-01 5 140579830 140579830 T C PCDHB11 Silent p.D161D 0.06 TCGA-CV-A45W-01 5 140596039 140596039 G T PCDHB13 Nonsense_Mutation p.E782* 0.28 TCGA-CV-A45W-01 5 140740025 140740025 C A PCDHGB2 Missense_Mutation p.T108N 0.19 deleterious(0) possibly_damaging(0.515) TCGA-CV-A45W-01 5 140751189 140751189 C T PCDHGB3 Silent p.L410L 0.21 TCGA-CV-A45W-01 5 140868991 140868991 C T PCDHGC5 Missense_Mutation p.R62W 0.08 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 5 150274920 150274920 A C ZNF300 3'UTR 0.20 TCGA-CV-A45W-01 5 168127602 168127602 T A SLIT3 Missense_Mutation p.H976L 0.23 tolerated(0.19) benign(0.003) TCGA-CV-A45W-01 5 179143263 179143263 C G CANX Missense_Mutation p.I293M 0.25 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 5 195132 195132 C T LRRC14B Silent p.R403R 0.12 TCGA-CV-A45W-01 5 19839120 19839120 G C CDH18 5'UTR 0.25 TCGA-CV-A45W-01 5 21802442 21802442 G T CDH12 Missense_Mutation p.P364T 0.13 tolerated(0.15) possibly_damaging(0.73) TCGA-CV-A45W-01 5 32126485 32126486 GA - GOLPH3 Frame_Shift_Del p.H244Cfs*18 0.14 TCGA-CV-A45W-01 5 33658365 33658365 G T ADAMTS12 Missense_Mutation p.P372T 0.12 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 5 35065731 35065731 A T PRLR Silent p.P443P 0.17 TCGA-CV-A45W-01 5 39364602 39364602 G T C9 5'UTR 0.22 TCGA-CV-A45W-01 5 39376172 39376172 G C DAB2 Missense_Mutation p.P725R 0.06 deleterious(0.01) possibly_damaging(0.581) TCGA-CV-A45W-01 5 41160391 41160391 C A C6 Nonsense_Mutation p.E513* 0.21 TCGA-CV-A45W-01 5 41934243 41934243 G A FBXO4 Missense_Mutation p.R244K 0.08 deleterious(0.01) probably_damaging(0.99) TCGA-CV-A45W-01 5 43704470 43704470 G C NNT Silent p.A1075A 0.12 TCGA-CV-A45W-01 5 64079699 64079699 G T CWC27 Nonsense_Mutation p.G97* 0.05 TCGA-CV-A45W-01 5 64766636 64766636 G T ADAMTS6 Missense_Mutation p.T144N 0.33 deleterious(0.01) possibly_damaging(0.593) TCGA-CV-A45W-01 5 65054572 65054572 G A NLN Missense_Mutation p.A74T 0.06 tolerated(0.63) benign(0.001) TCGA-CV-A45W-01 5 65054573 65054573 C T NLN Missense_Mutation p.A74V 0.06 tolerated(0.31) benign(0.001) TCGA-CV-A45W-01 5 76264621 76264621 G A CRHBP Missense_Mutation p.V294M 0.07 deleterious(0.03) benign(0.33) TCGA-CV-A45W-01 5 78373342 78373342 G T BHMT2 Nonsense_Mutation p.G25* 0.06 TCGA-CV-A45W-01 5 79743855 79743855 C T ZFYVE16 Missense_Mutation p.T912I 0.12 tolerated(0.08) possibly_damaging(0.475) TCGA-CV-A45W-01 6 105577301 105577301 C A BVES Missense_Mutation p.G102C 0.12 tolerated(0.05) benign(0.009) TCGA-CV-A45W-01 6 108067951 108067951 G C SCML4 Missense_Mutation p.H143Q 0.10 deleterious(0.01) possibly_damaging(0.515) TCGA-CV-A45W-01 6 119344239 119344239 G T FAM184A Missense_Mutation p.Q341K 0.20 tolerated(0.13) possibly_damaging(0.774) TCGA-CV-A45W-01 6 121768579 121768579 G T GJA1 Missense_Mutation p.V196L 0.12 deleterious(0) possibly_damaging(0.684) TCGA-CV-A45W-01 6 129588365 129588365 G A LAMA2 Splice_Site p.X774_splice 0.10 TCGA-CV-A45W-01 6 132203611 132203611 C A ENPP1 Missense_Mutation p.P743T 0.13 deleterious(0) possibly_damaging(0.904) TCGA-CV-A45W-01 6 133044184 133044184 C A VNN3 3'UTR 0.14 TCGA-CV-A45W-01 6 139164331 139164331 G C ECT2L Silent p.L186L 0.12 TCGA-CV-A45W-01 6 144757140 144757140 A G UTRN Missense_Mutation p.M309V 0.18 tolerated(0.98) benign(0.007) TCGA-CV-A45W-01 6 146480533 146480533 G A GRM1 Silent p.Q250Q 0.16 TCGA-CV-A45W-01 6 152542132 152542132 C G SYNE1 Missense_Mutation p.A7236P 0.09 benign(0.074) TCGA-CV-A45W-01 6 152826383 152826383 G T SYNE1 Missense_Mutation p.T244N 0.24 benign(0.016) TCGA-CV-A45W-01 6 155743916 155743916 G T NOX3 Missense_Mutation p.A407E 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-CV-A45W-01 6 160913830 160913830 T A LPAL2 RNA 0.13 TCGA-CV-A45W-01 6 166579304 166579304 A C T Missense_Mutation p.Y166D 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 6 167585672 167585672 G T TCP10L2 Missense_Mutation p.G14C 0.19 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-CV-A45W-01 6 168351917 168351917 G T MLLT4 Nonsense_Mutation p.E1288* 0.09 TCGA-CV-A45W-01 6 168431458 168431458 A C KIF25 Missense_Mutation p.Y33S 0.08 deleterious(0) probably_damaging(0.976) TCGA-CV-A45W-01 6 20109935 20109935 T G MBOAT1 Missense_Mutation p.K419Q 0.18 deleterious(0.01) possibly_damaging(0.687) TCGA-CV-A45W-01 6 25777226 25777226 T G SLC17A4 Intron 0.31 TCGA-CV-A45W-01 6 26027317 26027317 G A HIST1H4B Missense_Mutation p.T55I 0.18 tolerated(0.09) possibly_damaging(0.882) TCGA-CV-A45W-01 6 26032207 26032207 T C HIST1H3B Missense_Mutation p.K28E 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-CV-A45W-01 6 26199862 26199862 G T HIST1H2BF Missense_Mutation p.D26Y 0.07 deleterious_low_confidence(0) unknown(0) TCGA-CV-A45W-01 6 26377459 26377459 T A BTN3A2 3'UTR 0.38 TCGA-CV-A45W-01 6 28473480 28473480 C T GPX6 Silent p.K153K 0.14 TCGA-CV-A45W-01 6 28497332 28497332 C G GPX5 Missense_Mutation p.I64M 0.19 deleterious(0.02) possibly_damaging(0.687) TCGA-CV-A45W-01 6 29644900 29644900 C G ZFP57 5'UTR 0.27 TCGA-CV-A45W-01 6 30545865 30545865 C T ABCF1 Nonsense_Mutation p.R77* 0.16 TCGA-CV-A45W-01 6 33371793 33371793 G C KIFC1 Missense_Mutation p.E215Q 0.07 tolerated(0.29) benign(0.009) TCGA-CV-A45W-01 6 36020566 36020566 C T MAPK14 Silent p.Y69Y 0.13 TCGA-CV-A45W-01 6 36168208 36168208 G A BRPF3 Missense_Mutation p.A37T 0.06 deleterious(0) possibly_damaging(0.802) TCGA-CV-A45W-01 6 37183008 37183008 G A TMEM217 Missense_Mutation p.P219L 0.24 tolerated_low_confidence(1) benign(0) TCGA-CV-A45W-01 6 43100272 43100272 G A PTK7 Missense_Mutation p.A367T 0.36 tolerated(0.57) benign(0.228) TCGA-CV-A45W-01 6 44222784 44222784 C G SLC35B2 Missense_Mutation p.E320Q 0.14 tolerated(0.74) benign(0.002) TCGA-CV-A45W-01 6 46660576 46660576 G A TDRD6 Missense_Mutation p.G1571R 0.12 deleterious(0.01) probably_damaging(0.94) TCGA-CV-A45W-01 6 46661594 46661594 C A TDRD6 Missense_Mutation p.P1910H 0.10 deleterious(0.03) benign(0.077) TCGA-CV-A45W-01 6 46661854 46661854 G T TDRD6 Nonsense_Mutation p.E1997* 0.12 TCGA-CV-A45W-01 6 51944776 51944776 C A PKHD1 Silent p.L104L 0.18 TCGA-CV-A45W-01 6 69703759 69703759 T C BAI3 Missense_Mutation p.Y612H 0.16 deleterious(0) probably_damaging(0.929) TCGA-CV-A45W-01 6 69949024 69949024 G C BAI3 Missense_Mutation p.R907P 0.11 deleterious(0.04) possibly_damaging(0.722) TCGA-CV-A45W-01 6 7365751 7365751 C A CAGE1 Nonsense_Mutation p.G715* 0.11 TCGA-CV-A45W-01 6 74150012 74150012 G A MB21D1 Missense_Mutation p.S345L 0.09 deleterious(0) benign(0.348) TCGA-CV-A45W-01 6 99819333 99819333 G A COQ3 Missense_Mutation p.P287L 0.15 deleterious(0.05) probably_damaging(0.962) TCGA-CV-A45W-01 7 100606798 100606798 C G MUC3A Missense_Mutation p.L630V 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-CV-A45W-01 7 100675534 100675534 A C MUC17 Missense_Mutation p.R279S 0.08 benign(0) TCGA-CV-A45W-01 7 100679319 100679319 C A MUC17 Missense_Mutation p.T1541N 0.06 unknown(0) TCGA-CV-A45W-01 7 100861458 100861458 C T ZNHIT1 5'UTR 0.11 TCGA-CV-A45W-01 7 101063362 101063362 C A COL26A1 Missense_Mutation p.P88H 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A45W-01 7 1049731 1049731 G T C7orf50 Missense_Mutation p.P60T 0.09 deleterious(0.05) probably_damaging(0.994) TCGA-CV-A45W-01 7 106545637 106545637 A C PIK3CG Silent p.G1038G 0.15 TCGA-CV-A45W-01 7 113518278 113518279 TT A PPP1R3A Frame_Shift_Del p.T957Qfs*26 0.09 TCGA-CV-A45W-01 7 113518646 113518646 C G PPP1R3A Missense_Mutation p.R834T 0.07 deleterious(0) possibly_damaging(0.451) TCGA-CV-A45W-01 7 116593615 116593615 C G ST7 Silent p.G7G 0.09 TCGA-CV-A45W-01 7 117267747 117267747 G A CFTR Missense_Mutation p.D1214N 0.22 tolerated(0.66) benign(0) TCGA-CV-A45W-01 7 120655770 120655770 C T CPED1 Missense_Mutation p.L101F 0.26 deleterious(0) possibly_damaging(0.844) TCGA-CV-A45W-01 7 122811906 122811906 C T SLC13A1 Missense_Mutation p.C94Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-CV-A45W-01 7 127222068 127222068 T C GCC1 Nonstop_Mutation p.*776Wext*82 0.31 TCGA-CV-A45W-01 7 138432261 138432261 C A ATP6V0A4 Missense_Mutation p.G410V 0.24 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 7 138597198 138597198 T C KIAA1549 Missense_Mutation p.R963G 0.17 deleterious(0) benign(0.421) TCGA-CV-A45W-01 7 141727027 141727027 G T MGAM Missense_Mutation p.E365D 0.17 tolerated(0.09) benign(0.285) TCGA-CV-A45W-01 7 141727028 141727028 G T MGAM Splice_Site p.X365_splice 0.17 TCGA-CV-A45W-01 7 141740523 141740523 G C MGAM Missense_Mutation p.G792A 0.17 deleterious(0.01) benign(0.052) TCGA-CV-A45W-01 7 141954934 141954934 G T PRSS58 Missense_Mutation p.T126N 0.05 deleterious(0.04) benign(0.119) TCGA-CV-A45W-01 7 142131464 142131464 C A TRBV5-6 Silent p.V97V 0.09 TCGA-CV-A45W-01 7 142482369 142482369 C T PRSS3P2 RNA 0.07 TCGA-CV-A45W-01 7 143013433 143013433 A T CLCN1 Missense_Mutation p.Q43L 0.16 deleterious_low_confidence(0.03) benign(0.08) TCGA-CV-A45W-01 7 143701371 143701371 C A OR6B1 Missense_Mutation p.F94L 0.05 deleterious(0.04) benign(0.039) TCGA-CV-A45W-01 7 147964138 147964138 C A CNTNAP2 Missense_Mutation p.P1132H 0.14 tolerated(0.15) possibly_damaging(0.897) TCGA-CV-A45W-01 7 148801952 148801952 C A ZNF425 Silent p.R337R 0.31 TCGA-CV-A45W-01 7 149174789 149174789 T A ZNF746 Missense_Mutation p.E193V 0.26 deleterious(0) probably_damaging(0.985) TCGA-CV-A45W-01 7 149482270 149482270 T C SSPO RNA 0.16 TCGA-CV-A45W-01 7 151097245 151097245 C A WDR86 Missense_Mutation p.W82C 0.15 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 7 23682849 23682849 A G CCDC126 3'UTR 0.33 TCGA-CV-A45W-01 7 31013752 31013752 G T GHRHR Missense_Mutation p.W250C 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 7 31855669 31855669 G C PDE1C Missense_Mutation p.S621C 0.05 deleterious_low_confidence(0.01) benign(0.106) TCGA-CV-A45W-01 7 38253990 38253990 G C STARD3NL Missense_Mutation p.K86N 0.10 tolerated(0.24) benign(0.003) TCGA-CV-A45W-01 7 38393495 38393495 C G TRGV4 Missense_Mutation p.G59R 0.26 deleterious(0.03) probably_damaging(0.957) TCGA-CV-A45W-01 7 38725655 38725655 C T FAM183B 5'UTR 0.16 TCGA-CV-A45W-01 7 38805245 38805245 G T VPS41 Missense_Mutation p.L422I 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-CV-A45W-01 7 3991379 3991379 G T SDK1 Missense_Mutation p.S326I 0.15 tolerated(0.17) benign(0.027) TCGA-CV-A45W-01 7 42004735 42004735 C A GLI3 Missense_Mutation p.M1312I 0.14 tolerated_low_confidence(0.07) benign(0) TCGA-CV-A45W-01 7 42957398 42957398 A G PSMA2 Silent p.H189H 0.16 TCGA-CV-A45W-01 7 47317662 47317662 G T TNS3 3'UTR 0.26 TCGA-CV-A45W-01 7 6370094 6370094 A T FAM220A Missense_Mutation p.L231H 0.17 deleterious(0) possibly_damaging(0.601) TCGA-CV-A45W-01 7 64452994 64452994 G C ERV3-1 Missense_Mutation p.F137L 0.13 tolerated(0.64) benign(0.03) TCGA-CV-A45W-01 7 65445375 65445375 G T GUSB Missense_Mutation p.P78T 0.12 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 7 66304613 66304613 G T GTF2IRD1P1 RNA 0.19 TCGA-CV-A45W-01 7 75178230 75178230 C G HIP1 Missense_Mutation p.A789P 0.16 deleterious(0) benign(0.13) TCGA-CV-A45W-01 7 80380582 80380582 T C SEMA3C Intron 0.25 TCGA-CV-A45W-01 7 84642107 84642107 T A SEMA3D Missense_Mutation p.I587F 0.16 tolerated(0.29) benign(0.019) TCGA-CV-A45W-01 7 86541495 86541495 C T KIAA1324L Missense_Mutation p.D688N 0.15 tolerated(0.44) benign(0.071) TCGA-CV-A45W-01 7 88963800 88963800 G T ZNF804B Missense_Mutation p.G502C 0.12 tolerated(0.09) benign(0.001) TCGA-CV-A45W-01 7 88965939 88965939 C A ZNF804B Missense_Mutation p.Q1215K 0.07 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 7 89859300 89859300 A G STEAP2 Missense_Mutation p.I379V 0.19 tolerated(0.07) benign(0.123) TCGA-CV-A45W-01 7 89917652 89917652 A G C7orf63 Silent p.T587T 0.23 TCGA-CV-A45W-01 7 92935314 92935314 G T CCDC132 Missense_Mutation p.G543W 0.19 deleterious(0.03) probably_damaging(0.945) TCGA-CV-A45W-01 7 94540395 94540395 C - PPP1R9A Frame_Shift_Del p.P324Lfs*21 0.14 TCGA-CV-A45W-01 8 10467442 10467442 G T RP1L1 Missense_Mutation p.A1389D 0.05 unknown(0) TCGA-CV-A45W-01 8 113256776 113256776 G C CSMD3 Missense_Mutation p.P3417A 0.11 deleterious(0) possibly_damaging(0.823) TCGA-CV-A45W-01 8 113299424 113299424 C T CSMD3 Missense_Mutation p.R3067K 0.10 tolerated(0.13) benign(0.069) TCGA-CV-A45W-01 8 113318349 113318349 C A CSMD3 Missense_Mutation p.R2653L 0.21 deleterious(0.01) probably_damaging(0.949) TCGA-CV-A45W-01 8 113519006 113519006 G C CSMD3 Missense_Mutation p.N1603K 0.10 deleterious(0) probably_damaging(0.991) TCGA-CV-A45W-01 8 113988122 113988122 G T CSMD3 Missense_Mutation p.P429Q 0.10 tolerated(0.63) benign(0.001) TCGA-CV-A45W-01 8 121222140 121222140 G C COL14A1 Missense_Mutation p.E489D 0.12 tolerated(0.06) benign(0.202) TCGA-CV-A45W-01 8 125025843 125025843 G C FER1L6 Intron 0.15 TCGA-CV-A45W-01 8 133187702 133187702 G T KCNQ3 Missense_Mutation p.L311M 0.09 deleterious(0.01) probably_damaging(1) TCGA-CV-A45W-01 8 139164628 139164628 C A FAM135B Missense_Mutation p.W697L 0.21 deleterious(0.04) benign(0.124) TCGA-CV-A45W-01 8 139277987 139277987 C A FAM135B Missense_Mutation p.A86S 0.14 tolerated(0.44) benign(0.016) TCGA-CV-A45W-01 8 139672721 139672721 A T COL22A1 Silent p.G1081G 0.10 TCGA-CV-A45W-01 8 144942260 144942260 G A EPPK1 Missense_Mutation p.P1721L 0.18 probably_damaging(0.975) TCGA-CV-A45W-01 8 145515554 145515554 C A HSF1 Missense_Mutation p.P39T 0.33 tolerated(0.25) benign(0.237) TCGA-CV-A45W-01 8 145659042 145659042 C T TONSL Missense_Mutation p.R1163H 0.07 tolerated(0.62) benign(0.004) TCGA-CV-A45W-01 8 18490169 18490169 A T PSD3 Missense_Mutation p.S788R 0.07 tolerated(0.16) possibly_damaging(0.864) TCGA-CV-A45W-01 8 19681556 19681556 G T INTS10 Splice_Site p.X279_splice 0.05 TCGA-CV-A45W-01 8 24357694 24357694 G T ADAM7 Missense_Mutation p.D643Y 0.14 tolerated(0.09) probably_damaging(0.935) TCGA-CV-A45W-01 8 35425630 35425630 G T UNC5D Nonsense_Mutation p.E113* 0.07 TCGA-CV-A45W-01 8 42179608 42179608 G A IKBKB Missense_Mutation p.R592Q 0.10 tolerated(0.19) possibly_damaging(0.73) TCGA-CV-A45W-01 8 53573696 53573696 C T RB1CC1 Missense_Mutation p.E502K 0.23 deleterious(0) probably_damaging(0.993) TCGA-CV-A45W-01 8 57079872 57079872 C G PLAG1 Missense_Mutation p.A145P 0.08 deleterious(0) probably_damaging(0.989) TCGA-CV-A45W-01 8 61178546 61178546 A T CA8 Missense_Mutation p.W119R 0.13 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 8 61778055 61778055 G T CHD7 Nonsense_Mutation p.E2853* 0.12 TCGA-CV-A45W-01 8 74204133 74204133 C T RPL7 Silent p.V101V 0.11 TCGA-CV-A45W-01 8 77764186 77764186 G T ZFHX4 Missense_Mutation p.D1677Y 0.08 benign(0.005) TCGA-CV-A45W-01 8 92406494 92406494 C T SLC26A7 Missense_Mutation p.P662S 0.14 possibly_damaging(0.803) TCGA-CV-A45W-01 8 95390855 95390855 G C RAD54B Missense_Mutation p.S752C 0.21 deleterious(0) probably_damaging(0.928) TCGA-CV-A45W-01 8 98288688 98288688 G A TSPYL5 3'UTR 0.20 TCGA-CV-A45W-01 9 102784415 102784415 C G ERP44 Missense_Mutation p.R127P 0.15 deleterious(0) probably_damaging(0.998) TCGA-CV-A45W-01 9 104357277 104357277 C G PPP3R2 5'UTR 0.21 TCGA-CV-A45W-01 9 104432892 104432892 C T GRIN3A Missense_Mutation p.G601E 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 9 113245866 113245866 C T SVEP1 Missense_Mutation p.G680R 0.19 probably_damaging(1) TCGA-CV-A45W-01 9 119460324 119460324 G T TRIM32 Silent p.R101R 0.14 TCGA-CV-A45W-01 9 125282154 125282154 C T OR1J4 Silent p.L245L 0.17 TCGA-CV-A45W-01 9 12704637 12704637 C T TYRP1 Missense_Mutation p.P398L 0.26 deleterious(0) probably_damaging(0.934) TCGA-CV-A45W-01 9 131825526 131825526 G A FAM73B Silent p.T338T 0.08 TCGA-CV-A45W-01 9 135206728 135206728 G C SETX Missense_Mutation p.Q316E 0.06 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 9 135977032 135977032 G A RALGDS Missense_Mutation p.R777C 0.16 tolerated(0.08) unknown(0) TCGA-CV-A45W-01 9 137777670 137777670 C G FCN2 Nonsense_Mutation p.Y162* 0.13 TCGA-CV-A45W-01 9 138379125 138379125 C A PPP1R26 Silent p.G923G 0.32 TCGA-CV-A45W-01 9 139317557 139317557 G T PMPCA Missense_Mutation p.K473N 0.40 tolerated(0.06) benign(0.004) TCGA-CV-A45W-01 9 15778999 15778999 G T CCDC171 Nonsense_Mutation p.G978* 0.24 TCGA-CV-A45W-01 9 21409540 21409540 G C IFNA8 Missense_Mutation p.C122S 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 9 33676787 33676787 C T PTENP1 RNA 0.37 TCGA-CV-A45W-01 9 35560590 35560590 G A RUSC2 Missense_Mutation p.R1318Q 0.20 deleterious(0.04) probably_damaging(0.99) TCGA-CV-A45W-01 9 43625427 43625427 G T SPATA31A6 Missense_Mutation p.P1087Q 0.25 deleterious(0.02) benign(0.153) TCGA-CV-A45W-01 9 43625428 43625428 G T SPATA31A6 Missense_Mutation p.P1087T 0.26 tolerated(0.1) benign(0.39) TCGA-CV-A45W-01 9 43709755 43709755 G C CNTNAP3B Missense_Mutation p.R64T 0.17 deleterious(0) benign(0.142) TCGA-CV-A45W-01 9 6990518 6990518 G T KDM4C Missense_Mutation p.D594Y 0.29 deleterious(0) possibly_damaging(0.889) TCGA-CV-A45W-01 9 78943013 78943013 C A PCSK5 Nonsense_Mutation p.C1449* 0.07 TCGA-CV-A45W-01 9 79325765 79325765 C A PRUNE2 Silent p.G475G 0.20 TCGA-CV-A45W-01 9 79960036 79960036 G T VPS13A Nonsense_Mutation p.E2423* 0.05 TCGA-CV-A45W-01 9 8389292 8389292 C T PTPRD Missense_Mutation p.M1442I 0.22 deleterious(0) probably_damaging(0.942) TCGA-CV-A45W-01 9 90502295 90502295 A T SPATA31E1 Missense_Mutation p.S965C 0.09 deleterious(0) benign(0.349) TCGA-CV-A45W-01 9 92014251 92014251 C G SEMA4D Silent p.V85V 0.06 TCGA-CV-A45W-01 9 96051804 96051804 G A WNK2 Missense_Mutation p.G1627R 0.16 unknown(0) TCGA-CV-A45W-01 9 97522187 97522187 G T C9orf3 Missense_Mutation p.G41V 0.16 deleterious(0) probably_damaging(0.997) TCGA-CV-A45W-01 X 101395750 101395750 C A TCEAL6 3'UTR 0.39 TCGA-CV-A45W-01 X 101620201 101620201 G A NXF2B Silent p.Y415Y 0.10 TCGA-CV-A45W-01 X 108652357 108652357 C T GUCY2F Missense_Mutation p.G611D 0.34 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 X 111000960 111000960 G A ALG13 Missense_Mutation p.D1040N 0.12 tolerated(0.06) benign(0.005) TCGA-CV-A45W-01 X 111090557 111090557 G T TRPC5 Silent p.S495S 0.31 TCGA-CV-A45W-01 X 125685408 125685408 G A DCAF12L1 Missense_Mutation p.S395L 0.18 tolerated(0.27) benign(0) TCGA-CV-A45W-01 X 132159731 132159731 C A USP26 Missense_Mutation p.G840C 0.30 deleterious(0) probably_damaging(1) TCGA-CV-A45W-01 X 140996140 140996140 T A MAGEC1 Missense_Mutation p.S984T 0.21 deleterious(0.03) unknown(0) TCGA-CV-A45W-01 X 142795316 142795316 G T SPANXN2 Missense_Mutation p.S121Y 0.09 tolerated(0.71) unknown(0) TCGA-CV-A45W-01 X 142795355 142795355 G T SPANXN2 Missense_Mutation p.S108Y 0.08 tolerated(1) unknown(0) TCGA-CV-A45W-01 X 144903949 144903949 G A SLITRK2 Silent p.L2L 0.19 TCGA-CV-A45W-01 X 144904773 144904773 A T SLITRK2 Missense_Mutation p.H277L 0.16 tolerated(0.68) benign(0.001) TCGA-CV-A45W-01 X 150891238 150891238 C A FATE1 3'UTR 0.24 TCGA-CV-A45W-01 X 151092158 151092159 - A MAGEA4 Frame_Shift_Ins p.H9Afs*5 0.26 TCGA-CV-A45W-01 X 152823749 152823749 C G ATP2B3 Silent p.A871A 0.13 TCGA-CV-A45W-01 X 153042340 153042340 A T PLXNB3 Splice_Site p.X1635_splice 0.38 TCGA-CV-A45W-01 X 26212255 26212255 C A MAGEB6 Missense_Mutation p.R98S 0.20 tolerated(0.16) benign(0.046) TCGA-CV-A45W-01 X 2645376 2645376 G T CD99 Intron 0.21 TCGA-CV-A45W-01 X 3239484 3239484 C A MXRA5 Missense_Mutation p.E1414D 0.43 tolerated(0.23) benign(0.115) TCGA-CV-A45W-01 X 34148482 34148482 G T FAM47A Silent p.T638T 0.15 TCGA-CV-A45W-01 X 44929078 44929078 G T KDM6A Silent p.T726T 0.12 TCGA-CV-A45W-01 X 44929079 44929079 G T KDM6A Missense_Mutation p.V727L 0.12 tolerated_low_confidence(0.11) benign(0) TCGA-CV-A45W-01 X 47518279 47518279 T C UXT Silent p.K28K 0.31 TCGA-CV-A45W-01 X 48887433 48887433 C A TFE3 3'UTR 0.30 TCGA-CV-A45W-01 X 49236841 49236841 G A GAGE2B Missense_Mutation p.R4Q 0.09 probably_damaging(0.994) TCGA-CV-A45W-01 X 52825289 52825289 G C SPANXN5 3'UTR 0.30 TCGA-CV-A45W-01 X 64138847 64138847 C A ZC4H2 Intron 0.14 TCGA-CV-A45W-01 X 65417576 65417576 G C HEPH Missense_Mutation p.R572P 0.22 deleterious(0.03) possibly_damaging(0.829) TCGA-CV-A45W-01 X 69606538 69606538 G A KIF4A Missense_Mutation p.R702H 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A45W-01 X 71424931 71424932 - T ERCC6L Frame_Shift_Ins p.I1229Nfs*7 0.23 TCGA-CV-A45W-01 X 73064751 73064751 G C XIST RNA 0.15 TCGA-CV-A45W-01 X 75650600 75650600 G T MAGEE1 Missense_Mutation p.M759I 0.30 deleterious(0.02) probably_damaging(0.966) TCGA-CV-A45W-01 X 83352785 83352785 C A RPS6KA6 Missense_Mutation p.L616F 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-CV-A45W-01 X 83576885 83576885 C T HDX 3'UTR 0.19 TCGA-CV-A45W-01 X 83723604 83723604 C A HDX Missense_Mutation p.R376L 0.18 deleterious(0.03) benign(0.109) TCGA-CV-A45W-01 X 8764377 8764377 T C FAM9A Missense_Mutation p.I140M 0.25 tolerated_low_confidence(0.26) possibly_damaging(0.844) TCGA-CV-A45W-01 X 91090943 91090943 C T PCDH11X Missense_Mutation p.S147L 0.23 deleterious(0) probably_damaging(0.968) TCGA-CV-A45X-01 10 107005323 107005323 C A SORCS3 Missense_Mutation p.S964R 0.12 deleterious(0.01) probably_damaging(0.943) TCGA-CV-A45X-01 10 108716281 108716281 A T SORCS1 Missense_Mutation p.S206T 0.23 tolerated(0.06) benign(0.396) TCGA-CV-A45X-01 10 115947746 115947746 T C TDRD1 Silent p.N52N 0.11 TCGA-CV-A45X-01 10 128193218 128193218 G A C10orf90 Missense_Mutation p.A184V 0.28 tolerated(0.2) benign(0.036) TCGA-CV-A45X-01 10 97447374 97447374 G C TCTN3 Missense_Mutation p.T201S 0.32 tolerated(0.59) benign(0.023) TCGA-CV-A45X-01 11 101951964 101951964 A G C11orf70 Silent p.Q209Q 0.22 TCGA-CV-A45X-01 11 117222548 117222548 C T CEP164 Silent p.N79N 0.14 TCGA-CV-A45X-01 11 124189434 124189434 G A OR8D2 Silent p.F220F 0.05 TCGA-CV-A45X-01 11 1718850 1718850 C A KRTAP5-6 Nonsense_Mutation p.C125* 0.14 TCGA-CV-A45X-01 11 64507257 64507257 T A RASGRP2 Missense_Mutation p.T183S 0.31 deleterious(0.01) benign(0.038) TCGA-CV-A45X-01 11 64557716 64557716 T A MAP4K2 Missense_Mutation p.E731V 0.12 tolerated(0.18) benign(0.029) TCGA-CV-A45X-01 11 67167046 67167046 A C PPP1CA Missense_Mutation p.F181C 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.64) TCGA-CV-A45X-01 11 68582883 68582883 G A CPT1A Silent p.D20D 0.06 TCGA-CV-A45X-01 12 112681770 112681770 G T HECTD4 Silent p.V1373V 0.13 TCGA-CV-A45X-01 12 113715134 113715134 C T TPCN1 Silent p.F455F 0.15 TCGA-CV-A45X-01 12 121615009 121615009 C T P2RX7 Silent p.F344F 0.21 TCGA-CV-A45X-01 12 129467674 129467674 G A GLT1D1 3'UTR 0.29 TCGA-CV-A45X-01 12 13906828 13906828 G A GRIN2B Nonsense_Mutation p.Q145* 0.16 TCGA-CV-A45X-01 12 21355450 21355450 A T SLCO1B1 Silent p.A387A 0.23 TCGA-CV-A45X-01 12 41966826 41966826 C A PDZRN4 Missense_Mutation p.P749T 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-A45X-01 12 4609473 4609473 G C C12orf4 Nonsense_Mutation p.S424* 0.28 TCGA-CV-A45X-01 12 49580524 49580524 G A TUBA1A Silent p.P32P 0.18 TCGA-CV-A45X-01 12 53607444 53607444 G A RARG Missense_Mutation p.T285I 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-CV-A45X-01 12 66826405 66826405 G T GRIP1 Missense_Mutation p.S512Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-A45X-01 12 70983904 70983924 GAGTAGGATCCGATACTGCTC - PTPRB In_Frame_Del p.E624_L630del 0.27 TCGA-CV-A45X-01 12 72969048 72969048 A C TRHDE Silent p.I670I 0.12 TCGA-CV-A45X-01 13 20277461 20277461 C A PSPC1 Missense_Mutation p.G476C 0.17 deleterious(0.01) possibly_damaging(0.692) TCGA-CV-A45X-01 13 73467972 73467973 - T PIBF1 Frame_Shift_Ins p.Q459Sfs*3 0.28 TCGA-CV-A45X-01 13 96555301 96555301 T A UGGT2 Missense_Mutation p.H770L 0.19 tolerated(0.3) benign(0.04) TCGA-CV-A45X-01 14 104199002 104199002 C T ZFYVE21 Missense_Mutation p.P209L 0.10 deleterious(0.04) benign(0.33) TCGA-CV-A45X-01 14 105417703 105417703 A C AHNAK2 Missense_Mutation p.M1362R 0.14 benign(0.001) TCGA-CV-A45X-01 14 19377698 19377698 G T OR11H12 Missense_Mutation p.E35D 0.13 tolerated(0.35) benign(0.005) TCGA-CV-A45X-01 14 22237191 22237191 C A TRAV6 Missense_Mutation p.R90S 0.19 tolerated(0.1) possibly_damaging(0.49) TCGA-CV-A45X-01 14 64954651 64954651 G A ZBTB25 Nonsense_Mutation p.R100* 0.11 TCGA-CV-A45X-01 14 69262996 69262996 G A ZFP36L1 5'Flank 0.27 TCGA-CV-A45X-01 15 20666448 20666448 C T HERC2P3 RNA 0.12 TCGA-CV-A45X-01 15 31947302 31947302 C A OTUD7A Nonsense_Mutation p.E50* 0.54 TCGA-CV-A45X-01 15 52902410 52902410 C T FAM214A Missense_Mutation p.G234D 0.16 tolerated(0.09) benign(0.077) TCGA-CV-A45X-01 15 72552938 72552938 T C PARP6 Missense_Mutation p.I213V 0.36 tolerated_low_confidence(0.59) benign(0.001) TCGA-CV-A45X-01 15 75501072 75501072 C T C15orf39 Missense_Mutation p.R895C 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-A45X-01 16 53639489 53639489 C T RPGRIP1L Missense_Mutation p.E1247K 0.13 tolerated(0.06) benign(0.02) TCGA-CV-A45X-01 16 74447538 74447538 G T CLEC18B Silent p.R165R 0.05 TCGA-CV-A45X-01 16 74949804 74949804 G C WDR59 Silent p.S396S 0.11 TCGA-CV-A45X-01 16 77334208 77334208 A G ADAMTS18 Missense_Mutation p.Y876H 0.06 tolerated(0.12) benign(0.063) TCGA-CV-A45X-01 17 39658503 39658503 T A KRT13 Intron 0.21 TCGA-CV-A45X-01 17 40844735 40844735 G A CNTNAP1 Missense_Mutation p.V917M 0.41 deleterious(0) probably_damaging(0.999) TCGA-CV-A45X-01 17 4936857 4936857 C T SLC52A1 Silent p.G309G 0.43 TCGA-CV-A45X-01 17 62122834 62122834 G A ERN1 Silent p.S846S 0.18 TCGA-CV-A45X-01 17 68129080 68129080 T C KCNJ16 Silent p.Y284Y 0.43 TCGA-CV-A45X-01 17 7189281 7189281 C A SLC2A4 Intron 0.27 TCGA-CV-A45X-01 17 7579699 7579699 C A TP53 Splice_Site p.X32_splice 0.26 TCGA-CV-A45X-01 17 7806033 7806033 G A CHD3 Missense_Mutation p.D1179N 0.18 possibly_damaging(0.831) TCGA-CV-A45X-01 17 78355364 78355364 T A RNF213 Silent p.I4605I 0.38 TCGA-CV-A45X-01 18 2760723 2760723 C G SMCHD1 Missense_Mutation p.L1474V 0.12 tolerated(0.05) probably_damaging(0.996) TCGA-CV-A45X-01 18 31709908 31709908 G A NOL4 Missense_Mutation p.S114L 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-CV-A45X-01 19 11591501 11591501 T A ELAVL3 5'UTR 0.20 TCGA-CV-A45X-01 19 18255941 18255941 G A MAST3 Missense_Mutation p.V952I 0.16 tolerated(1) benign(0.028) TCGA-CV-A45X-01 19 37675998 37675998 C T ZNF585B 3'UTR 0.40 TCGA-CV-A45X-01 19 42125632 42125632 C T CEACAM4 3'UTR 0.13 TCGA-CV-A45X-01 19 43967419 43967419 G T LYPD3 Missense_Mutation p.P135T 0.29 deleterious(0) possibly_damaging(0.743) TCGA-CV-A45X-01 19 53645507 53645507 G C ZNF347 Missense_Mutation p.L193V 0.14 tolerated(0.07) possibly_damaging(0.833) TCGA-CV-A45X-01 1 104203270 104203270 G A AMY1A Missense_Mutation p.R358H 0.19 tolerated(0.52) benign(0.001) TCGA-CV-A45X-01 1 109870185 109870185 C T SORT1 Silent p.Q470Q 0.20 TCGA-CV-A45X-01 1 11319340 11319340 C A MTOR Nonsense_Mutation p.E43* 0.18 TCGA-CV-A45X-01 1 149871699 149871699 C T BOLA1 Silent p.I29I 0.14 TCGA-CV-A45X-01 1 152191029 152191029 G A HRNR Missense_Mutation p.P1026S 0.38 unknown(0) TCGA-CV-A45X-01 1 156209338 156209338 G T PMF1 Intron 0.20 TCGA-CV-A45X-01 1 157667162 157667162 C A FCRL3 Silent p.G204G 0.07 TCGA-CV-A45X-01 1 158299853 158299853 C T CD1B Silent p.L132L 0.17 TCGA-CV-A45X-01 1 162569111 162569111 C T UAP1 Silent p.I492I 0.08 TCGA-CV-A45X-01 1 173839605 173839605 A G ZBTB37 Missense_Mutation p.E81G 0.06 deleterious(0) probably_damaging(0.984) TCGA-CV-A45X-01 1 183891453 183891453 T C RGL1 Missense_Mutation p.V736A 0.23 deleterious(0.04) benign(0.039) TCGA-CV-A45X-01 1 185902905 185902905 G C HMCN1 Missense_Mutation p.V593L 0.09 possibly_damaging(0.814) TCGA-CV-A45X-01 1 205156746 205156746 G A DSTYK Missense_Mutation p.R152C 0.10 deleterious(0.04) possibly_damaging(0.772) TCGA-CV-A45X-01 1 222897441 222897441 G C BROX Missense_Mutation p.E137Q 0.23 tolerated(0.27) probably_damaging(0.916) TCGA-CV-A45X-01 1 23688441 23688441 C T ZNF436 3'UTR 0.14 TCGA-CV-A45X-01 1 248309152 248309152 C G OR2M5 Missense_Mutation p.R235G 0.33 deleterious(0) benign(0.255) TCGA-CV-A45X-01 1 248569809 248569809 C T OR2T1 Missense_Mutation p.R172C 0.08 tolerated(0.05) benign(0.028) TCGA-CV-A45X-01 1 25167425 25167425 G A CLIC4 Silent p.K253K 0.11 TCGA-CV-A45X-01 1 47279207 47279207 T C CYP4B1 Silent p.D183D 0.10 TCGA-CV-A45X-01 1 48703424 48703424 C G SLC5A9 Missense_Mutation p.L481V 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-CV-A45X-01 1 52705057 52705057 C A ZFYVE9 Silent p.I656I 0.25 TCGA-CV-A45X-01 1 52901118 52901118 G A ZCCHC11 Silent p.N1394N 0.12 TCGA-CV-A45X-01 1 74670333 74670333 C T FPGT Missense_Mutation p.T201I 0.06 deleterious(0) probably_damaging(0.987) TCGA-CV-A45X-01 1 99772531 99772531 A C LPPR4 Missense_Mutation p.K753Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-A45X-01 20 17599307 17599307 T C RRBP1 Silent p.L798L 0.11 TCGA-CV-A45X-01 20 21306917 21306917 C T XRN2 Missense_Mutation p.P26S 0.10 tolerated(0.22) benign(0.014) TCGA-CV-A45X-01 20 36767845 36767845 C T TGM2 Silent p.E437E 0.08 TCGA-CV-A45X-01 20 60581737 60581737 C T TAF4 Silent p.P684P 0.18 TCGA-CV-A45X-01 21 43531711 43531711 G A UMODL1 Silent p.R793R 0.43 TCGA-CV-A45X-01 21 47860937 47860937 T A PCNT Missense_Mutation p.I3188N 0.34 benign(0.009) TCGA-CV-A45X-01 22 23241811 23241811 G A IGLL5 3'Flank 0.41 TCGA-CV-A45X-01 22 26895271 26895271 G T TFIP11 Silent p.V376V 0.42 TCGA-CV-A45X-01 22 38531073 38531073 G C PLA2G6 Missense_Mutation p.I272M 0.27 deleterious(0.03) benign(0.172) TCGA-CV-A45X-01 22 42523915 42523915 G A CYP2D6 Missense_Mutation p.A305V 0.10 deleterious(0.01) possibly_damaging(0.773) TCGA-CV-A45X-01 2 1271277 1271277 C A SNTG2 Silent p.G406G 0.13 TCGA-CV-A45X-01 2 160289337 160289337 C T BAZ2B Missense_Mutation p.E611K 0.09 benign(0.292) TCGA-CV-A45X-01 2 175292538 175292549 AGAAAATTGTTA - SCRN3 In_Frame_Del p.E397_N401delinsD 0.33 TCGA-CV-A45X-01 2 183822311 183822311 T C NCKAP1 Missense_Mutation p.H638R 0.16 deleterious(0.01) possibly_damaging(0.713) TCGA-CV-A45X-01 2 196740432 196740432 C T DNAH7 Missense_Mutation p.D2085N 0.32 deleterious(0.01) probably_damaging(0.914) TCGA-CV-A45X-01 2 24516638 24516638 G C ITSN2 Missense_Mutation p.Q548E 0.12 deleterious(0.03) unknown(0) TCGA-CV-A45X-01 2 27666321 27666321 T A KRTCAP3 Silent p.A179A 0.12 TCGA-CV-A45X-01 2 44457630 44457630 G C PPM1B Missense_Mutation p.G405R 0.18 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CV-A45X-01 3 112545855 112545855 C T CD200R1L Missense_Mutation p.V222I 0.10 tolerated(1) benign(0) TCGA-CV-A45X-01 3 158531858 158531858 T C MFSD1 Splice_Site p.X267_splice 0.13 TCGA-CV-A45X-01 3 186289893 186289893 C G DNAJB11 Missense_Mutation p.F26L 0.06 tolerated(0.12) probably_damaging(0.996) TCGA-CV-A45X-01 3 187419765 187419765 T G RTP2 Missense_Mutation p.H51P 0.11 tolerated(0.1) probably_damaging(0.94) TCGA-CV-A45X-01 3 25622137 25622137 A T RARB Missense_Mutation p.K237I 0.09 deleterious(0) probably_damaging(0.997) TCGA-CV-A45X-01 3 39374689 39374689 C A CCR8 Silent p.S289S 0.17 TCGA-CV-A45X-01 3 41949376 41949376 C T ULK4 Missense_Mutation p.M381I 0.18 tolerated(0.2) benign(0) TCGA-CV-A45X-01 3 51696557 51696557 C T RAD54L2 Silent p.I1175I 0.20 TCGA-CV-A45X-01 3 74418524 74418524 A G CNTN3 Silent p.N254N 0.17 TCGA-CV-A45X-01 4 104079535 104079535 C T CENPE Silent p.S985S 0.12 TCGA-CV-A45X-01 4 119754819 119754819 C G SEC24D Silent p.P11P 0.12 TCGA-CV-A45X-01 4 15063828 15063828 A G CPEB2 Missense_Mutation p.I941V 0.12 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-CV-A45X-01 4 155528120 155528120 G A FGG Missense_Mutation p.A289V 0.11 deleterious(0.04) possibly_damaging(0.903) TCGA-CV-A45X-01 4 175183944 175183944 G A FBXO8 Silent p.D100D 0.11 TCGA-CV-A45X-01 4 81967328 81967328 G A BMP3 Silent p.E251E 0.22 TCGA-CV-A45X-01 4 81967329 81967329 C A BMP3 Missense_Mutation p.P252T 0.23 deleterious(0) possibly_damaging(0.839) TCGA-CV-A45X-01 4 853491 853491 T A GAK Silent p.G1062G 0.11 TCGA-CV-A45X-01 5 111576462 111576462 A T EPB41L4A Missense_Mutation p.C281S 0.17 deleterious(0) possibly_damaging(0.901) TCGA-CV-A45X-01 5 134364688 134364688 G T PITX1 Silent p.L242L 0.15 TCGA-CV-A45X-01 5 33461017 33461017 G C TARS Missense_Mutation p.D454H 0.09 tolerated(0.07) possibly_damaging(0.897) TCGA-CV-A45X-01 5 7804770 7804770 G T ADCY2 Missense_Mutation p.G950C 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A45X-01 6 101215068 101215068 T A ASCC3 Missense_Mutation p.I517F 0.32 deleterious(0) possibly_damaging(0.744) TCGA-CV-A45X-01 6 132194150 132194150 C A ENPP1 Missense_Mutation p.P509T 0.10 tolerated(0.16) benign(0.033) TCGA-CV-A45X-01 6 43752311 43752311 G T VEGFA 3'UTR 0.38 TCGA-CV-A45X-01 7 18067430 18067430 C T PRPS1L1 5'UTR 0.06 TCGA-CV-A45X-01 7 27856133 27856133 A G TAX1BP1 Missense_Mutation p.T644A 0.15 tolerated(0.2) benign(0.001) TCGA-CV-A45X-01 7 30491286 30491286 C G NOD1 Missense_Mutation p.D583H 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-CV-A45X-01 7 37936551 37936551 G C NME8 Missense_Mutation p.E542Q 0.05 deleterious(0.01) probably_damaging(0.984) TCGA-CV-A45X-01 7 4820887 4820887 C T AP5Z1 Silent p.T41T 0.09 TCGA-CV-A45X-01 7 77379048 77379048 C G RSBN1L Silent p.L337L 0.11 TCGA-CV-A45X-01 8 124360284 124360284 C T ATAD2 Intron 0.10 TCGA-CV-A45X-01 8 134128920 134128920 G A TG Missense_Mutation p.V2608I 0.13 deleterious(0.04) benign(0.11) TCGA-CV-A45X-01 8 26627799 26627799 C T ADRA1A Missense_Mutation p.R423Q 0.41 deleterious_low_confidence(0.01) benign(0.173) TCGA-CV-A45X-01 8 29207652 29207652 C T DUSP4 Silent p.L48L 0.38 TCGA-CV-A45X-01 8 38162186 38162186 T C WHSC1L1 Missense_Mutation p.I844V 0.14 tolerated(1) benign(0.012) TCGA-CV-A45X-01 8 38172932 38172932 A T WHSC1L1 Splice_Site p.X705_splice 0.11 TCGA-CV-A45X-01 9 79461549 79461549 C T PRUNE2 Silent p.P130P 0.15 TCGA-CV-A45X-01 X 101093226 101093226 T A NXF5 Missense_Mutation p.E269V 0.58 tolerated(0.14) benign(0.072) TCGA-CV-A45X-01 X 114874792 114874792 G A PLS3 Missense_Mutation p.D322N 0.29 tolerated(0.42) benign(0.002) TCGA-CV-A45X-01 X 123657346 123657346 C G TENM1 Missense_Mutation p.Q967H 0.22 deleterious(0.01) benign(0.011) TCGA-CV-A45X-01 X 136649292 136649292 C A ZIC3 Missense_Mutation p.H148N 0.25 deleterious(0.02) possibly_damaging(0.838) TCGA-CV-A45X-01 X 153588703 153588703 C T FLNA Missense_Mutation p.V1154M 0.24 deleterious(0) possibly_damaging(0.76) TCGA-CV-A45X-01 X 92927520 92927520 C A NAP1L3 Missense_Mutation p.D262Y 0.15 deleterious_low_confidence(0) benign(0.152) TCGA-CV-A45X-01 Y 2829478 2829478 A T ZFY Missense_Mutation p.H142L 0.64 tolerated(0.36) benign(0.41) TCGA-CV-A45Y-01 10 17363155 17363155 G C ST8SIA6 Missense_Mutation p.L307V 0.04 tolerated(0.17) probably_damaging(0.999) TCGA-CV-A45Y-01 10 8115926 8115926 G C GATA3 Silent p.P425P 0.12 TCGA-CV-A45Y-01 11 118925381 118925381 G A HYOU1 Missense_Mutation p.P168L 0.16 tolerated(0.09) benign(0.03) TCGA-CV-A45Y-01 11 5254314 5254314 G T HBD Silent p.G108G 0.08 TCGA-CV-A45Y-01 11 62293766 62293766 G C AHNAK Missense_Mutation p.S2708C 0.03 probably_damaging(0.999) TCGA-CV-A45Y-01 12 109181855 109181855 C T SSH1 Missense_Mutation p.G1020E 0.07 tolerated_low_confidence(0.05) benign(0.013) TCGA-CV-A45Y-01 12 109181883 109181883 C T SSH1 Missense_Mutation p.E1011K 0.05 deleterious_low_confidence(0.04) benign(0.009) TCGA-CV-A45Y-01 12 15068572 15068572 T A ERP27 Missense_Mutation p.I209L 0.17 tolerated(0.38) benign(0.134) TCGA-CV-A45Y-01 12 15262141 15262141 C T RERG Missense_Mutation p.R168H 0.15 deleterious(0.05) possibly_damaging(0.479) TCGA-CV-A45Y-01 12 26809443 26809443 C A ITPR2 Missense_Mutation p.R744L 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-CV-A45Y-01 12 56868436 56868436 G T GLS2 Silent p.I372I 0.04 TCGA-CV-A45Y-01 14 20841840 20841840 C T TEP1 Missense_Mutation p.A2201T 0.07 tolerated(0.42) benign(0.01) TCGA-CV-A45Y-01 14 23887443 23887443 C A MYH7 Missense_Mutation p.R1382L 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-CV-A45Y-01 14 23898464 23898464 C T MYH7 Missense_Mutation p.V411I 0.06 deleterious(0.05) probably_damaging(0.939) TCGA-CV-A45Y-01 14 60976389 60976389 G T SIX6 Missense_Mutation p.W91C 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A45Y-01 15 33023039 33023039 C G GREM1 Missense_Mutation p.P50A 0.17 tolerated(0.26) benign(0.026) TCGA-CV-A45Y-01 15 40631033 40631033 C T C15orf52 Silent p.E145E 0.10 TCGA-CV-A45Y-01 16 2257314 2257314 G A MLST8 Missense_Mutation p.D181N 0.09 tolerated(0.15) benign(0.014) TCGA-CV-A45Y-01 16 3586202 3586202 C G CLUAP1 Silent p.L391L 0.08 TCGA-CV-A45Y-01 17 1582344 1582344 G A PRPF8 Silent p.F522F 0.05 TCGA-CV-A45Y-01 17 2604761 2604761 C A CLUH Silent p.G228G 0.13 TCGA-CV-A45Y-01 17 33592888 33592888 T C SLFN5 Missense_Mutation p.I886T 0.14 deleterious(0) probably_damaging(0.922) TCGA-CV-A45Y-01 17 39137270 39137270 C G KRT40 Missense_Mutation p.R274T 0.04 deleterious(0) probably_damaging(0.911) TCGA-CV-A45Y-01 17 7578397 7578398 - G TP53 Frame_Shift_Ins p.H178Pfs*3 0.17 TCGA-CV-A45Y-01 18 28737387 28737387 G C DSC1 Missense_Mutation p.Q100E 0.08 tolerated(0.65) benign(0.345) TCGA-CV-A45Y-01 19 11998714 11998714 C T ZNF69 5'UTR 0.07 TCGA-CV-A45Y-01 19 12780853 12780853 C T WDR83 Missense_Mutation p.R56W 0.05 deleterious(0) possibly_damaging(0.65) TCGA-CV-A45Y-01 19 18888347 18888347 C G CRTC1 3'UTR 0.21 TCGA-CV-A45Y-01 19 22270924 22270924 G C ZNF257 Missense_Mutation p.K124N 0.14 tolerated(0.08) possibly_damaging(0.855) TCGA-CV-A45Y-01 19 36633596 36633596 G A CAPNS1 Missense_Mutation p.E96K 0.05 deleterious(0.01) possibly_damaging(0.507) TCGA-CV-A45Y-01 19 36831910 36831910 C G ZFP14 Missense_Mutation p.R273P 0.05 tolerated(0.15) probably_damaging(0.997) TCGA-CV-A45Y-01 19 50905484 50905484 C T POLD1 Silent p.H204H 0.07 TCGA-CV-A45Y-01 1 1249181 1249181 C G CPSF3L Missense_Mutation p.Q302H 0.05 tolerated(0.15) benign(0.029) TCGA-CV-A45Y-01 1 147230868 147230868 C T GJA5 Missense_Mutation p.R160H 0.16 deleterious(0) probably_damaging(0.972) TCGA-CV-A45Y-01 1 16245988 16245988 C G SPEN Missense_Mutation p.F537L 0.05 probably_damaging(0.994) TCGA-CV-A45Y-01 1 162469842 162469842 C G UHMK1 Silent p.L122L 0.05 TCGA-CV-A45Y-01 1 20517916 20517916 G C UBXN10 3'UTR 0.06 TCGA-CV-A45Y-01 1 226334469 226334469 C G ACBD3 Missense_Mutation p.D477H 0.04 deleterious(0) probably_damaging(0.978) TCGA-CV-A45Y-01 1 228582764 228582764 T C TRIM11 Missense_Mutation p.D350G 0.09 deleterious(0.03) benign(0.005) TCGA-CV-A45Y-01 1 248487611 248487611 G C OR2M7 Missense_Mutation p.S87C 0.03 deleterious(0.01) probably_damaging(0.996) TCGA-CV-A45Y-01 1 32622536 32622536 C G KPNA6 Missense_Mutation p.S74C 0.06 deleterious(0.02) possibly_damaging(0.778) TCGA-CV-A45Y-01 1 32860016 32860016 C G BSDC1 5'UTR 0.06 TCGA-CV-A45Y-01 1 38032593 38032593 G A GNL2 Nonsense_Mutation p.R687* 0.08 TCGA-CV-A45Y-01 1 47607877 47607877 G A CYP4A22 Silent p.G160G 0.16 TCGA-CV-A45Y-01 1 6711664 6711664 T A DNAJC11 Splice_Site p.X211_splice 0.17 TCGA-CV-A45Y-01 1 7724935 7724935 G - CAMTA1 Frame_Shift_Del p.I777Sfs*57 0.11 TCGA-CV-A45Y-01 20 47324805 47324805 C A PREX1 Missense_Mutation p.G259V 0.09 deleterious(0) probably_damaging(0.963) TCGA-CV-A45Y-01 21 46875459 46875459 C T COL18A1 Silent p.P5P 0.09 TCGA-CV-A45Y-01 22 24836656 24836656 C T ADORA2A Silent p.C146C 0.26 TCGA-CV-A45Y-01 2 198570695 198570695 C T MARS2 Missense_Mutation p.S189L 0.11 tolerated(0.15) benign(0.005) TCGA-CV-A45Y-01 2 215914477 215914477 G C ABCA12 Nonsense_Mutation p.S189* 0.09 TCGA-CV-A45Y-01 2 25498412 25498412 C A DNMT3A Missense_Mutation p.G150V 0.11 tolerated(0.28) benign(0.145) TCGA-CV-A45Y-01 2 40366587 40366587 A G SLC8A1 Silent p.D833D 0.21 TCGA-CV-A45Y-01 3 143691330 143691330 C T C3orf58 Silent p.L52L 0.07 TCGA-CV-A45Y-01 3 150460339 150460339 G C SIAH2 Silent p.L188L 0.12 TCGA-CV-A45Y-01 3 167068252 167068252 G A ZBBX Missense_Mutation p.H162Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Y-01 4 120190941 120190941 C T USP53 Nonsense_Mutation p.Q462* 0.12 TCGA-CV-A45Y-01 4 47537632 47537632 G A ATP10D Missense_Mutation p.G295S 0.05 deleterious(0) probably_damaging(1) TCGA-CV-A45Y-01 4 70361281 70361281 A G UGT2B4 Missense_Mutation p.L100P 0.13 tolerated(0.08) possibly_damaging(0.629) TCGA-CV-A45Y-01 5 1242892 1242892 G A SLC6A18 Missense_Mutation p.V349I 0.11 tolerated(0.28) benign(0.322) TCGA-CV-A45Y-01 5 150847313 150847313 G C SLC36A1 Missense_Mutation p.E184Q 0.06 tolerated(0.18) benign(0.062) TCGA-CV-A45Y-01 5 41045928 41045928 T G MROH2B Missense_Mutation p.S586R 0.11 deleterious(0.04) benign(0.005) TCGA-CV-A45Y-01 5 45267295 45267295 C T HCN1 Missense_Mutation p.R560H 0.09 deleterious(0) probably_damaging(0.996) TCGA-CV-A45Y-01 5 7789838 7789838 G C ADCY2 Silent p.L851L 0.07 TCGA-CV-A45Y-01 5 79442049 79442049 C G SERINC5 Missense_Mutation p.E368Q 0.05 tolerated(0.11) probably_damaging(0.925) TCGA-CV-A45Y-01 5 82815483 82815483 C G VCAN Nonsense_Mutation p.S453* 0.10 TCGA-CV-A45Y-01 6 109819114 109819114 G T AK9 Missense_Mutation p.P1701T 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Y-01 6 142519629 142519629 C G VTA1 Missense_Mutation p.Q192E 0.09 tolerated(1) benign(0.004) TCGA-CV-A45Y-01 6 30622988 30622988 G C DHX16 Silent p.L929L 0.05 TCGA-CV-A45Y-01 6 41738930 41738930 C G FRS3 Silent p.L302L 0.07 TCGA-CV-A45Y-01 6 52705627 52705627 G A GSTA5 5'UTR 0.08 TCGA-CV-A45Y-01 6 56418442 56418442 G A DST Nonsense_Mutation p.Q2427* 0.08 TCGA-CV-A45Y-01 6 57006251 57006251 G A ZNF451 Missense_Mutation p.G285D 0.22 tolerated(0.3) possibly_damaging(0.662) TCGA-CV-A45Y-01 7 98636133 98636133 C A SMURF1 Silent p.T548T 0.06 TCGA-CV-A45Y-01 8 10465188 10465188 C T RP1L1 Silent p.E2140E 0.08 TCGA-CV-A45Y-01 8 106815541 106815541 G A ZFPM2 Silent p.S1077S 0.09 TCGA-CV-A45Y-01 8 113331129 113331129 C T CSMD3 Missense_Mutation p.A2433T 0.11 deleterious(0.01) benign(0.006) TCGA-CV-A45Y-01 8 125565217 125565217 C T MTSS1 3'UTR 0.09 TCGA-CV-A45Y-01 8 13357060 13357060 A T DLC1 Missense_Mutation p.L174Q 0.05 tolerated_low_confidence(0.29) benign(0.157) TCGA-CV-A45Y-01 8 145749502 145749502 C T LRRC24 Missense_Mutation p.R200H 0.09 deleterious(0) probably_damaging(0.985) TCGA-CV-A45Y-01 8 39442835 39442835 G T ADAM18 Missense_Mutation p.K32N 0.09 deleterious(0) benign(0.219) TCGA-CV-A45Y-01 8 86050673 86050673 C G LRRCC1 Missense_Mutation p.L935V 0.07 deleterious(0) probably_damaging(0.977) TCGA-CV-A45Y-01 9 107556779 107556779 T C ABCA1 Missense_Mutation p.I1799V 0.09 tolerated(0.8) benign(0.173) TCGA-CV-A45Y-01 9 115806449 115806449 T C ZFP37 Missense_Mutation p.N150S 0.11 tolerated(0.43) benign(0.013) TCGA-CV-A45Y-01 9 126132531 126132531 G T CRB2 Missense_Mutation p.C400F 0.09 deleterious(0) benign(0.308) TCGA-CV-A45Y-01 X 100617201 100617201 T C BTK Missense_Mutation p.K183R 0.20 tolerated(0.36) benign(0.004) TCGA-CV-A45Y-01 X 111025198 111025198 C G TRPC5 Missense_Mutation p.G689R 0.26 tolerated(0.51) benign(0.044) TCGA-CV-A45Y-01 X 118723885 118723885 A G NKRF Silent p.Y516Y 0.10 TCGA-CV-A45Y-01 X 69456945 69456945 C G AWAT1 Missense_Mutation p.H103D 0.21 deleterious(0) benign(0.267) TCGA-CV-A45Y-01 X 69645276 69645276 G C GDPD2 Missense_Mutation p.V60L 0.12 deleterious(0.03) benign(0.025) TCGA-CV-A45Y-01 X 71350365 71350365 C G RGAG4 Missense_Mutation p.E342D 0.25 deleterious(0.05) benign(0.005) TCGA-CV-A45Z-01 10 108923887 108923887 C G SORCS1 Missense_Mutation p.R133T 0.14 tolerated(0.18) benign(0.104) TCGA-CV-A45Z-01 10 118187449 118187449 A T PNLIPRP3 5'UTR 0.14 TCGA-CV-A45Z-01 10 1230936 1230936 G C ADARB2 Silent p.P636P 0.15 TCGA-CV-A45Z-01 10 128829949 128829949 T C DOCK1 Missense_Mutation p.F533L 0.26 deleterious(0) benign(0.007) TCGA-CV-A45Z-01 10 128829952 128829952 G T DOCK1 Missense_Mutation p.V534F 0.26 deleterious(0) possibly_damaging(0.893) TCGA-CV-A45Z-01 10 129914193 129914193 T C MKI67 Missense_Mutation p.K160R 0.11 deleterious(0.04) benign(0.109) TCGA-CV-A45Z-01 10 134016257 134016257 G T DPYSL4 Silent p.P463P 0.09 TCGA-CV-A45Z-01 10 13523095 13523095 G T BEND7 Missense_Mutation p.D237E 0.14 tolerated_low_confidence(0.06) probably_damaging(0.979) TCGA-CV-A45Z-01 10 14816434 14816434 G T FAM107B Missense_Mutation p.Q77K 0.17 tolerated_low_confidence(0.84) benign(0.001) TCGA-CV-A45Z-01 10 16893281 16893281 G C CUBN Missense_Mutation p.L3206V 0.10 tolerated(0.08) probably_damaging(0.999) TCGA-CV-A45Z-01 10 16957976 16957976 G A CUBN Missense_Mutation p.H2352Y 0.09 tolerated(1) benign(0.002) TCGA-CV-A45Z-01 10 17277251 17277251 C A VIM Silent p.R364R 0.14 TCGA-CV-A45Z-01 10 17277252 17277252 C T VIM Silent p.L365L 0.14 TCGA-CV-A45Z-01 10 18955536 18955536 G T ARL5B Missense_Mutation p.A27S 0.08 deleterious(0.01) probably_damaging(0.98) TCGA-CV-A45Z-01 10 22209838 22209838 G A DNAJC1 Silent p.Y142Y 0.11 TCGA-CV-A45Z-01 10 25887832 25887832 C A GPR158 Missense_Mutation p.P1093T 0.11 tolerated(0.14) benign(0.062) TCGA-CV-A45Z-01 10 28905190 28905190 G C WAC Missense_Mutation p.A549P 0.09 tolerated(0.07) benign(0.282) TCGA-CV-A45Z-01 10 45956740 45956740 C G MARCH8 Missense_Mutation p.R121P 0.14 deleterious(0) probably_damaging(0.983) TCGA-CV-A45Z-01 10 49381058 49381058 C A FRMPD2 Nonsense_Mutation p.E1052* 0.14 TCGA-CV-A45Z-01 10 50532551 50532551 C G C10orf71 Missense_Mutation p.P654R 0.35 tolerated(0.09) possibly_damaging(0.531) TCGA-CV-A45Z-01 10 50819260 50819260 C A SLC18A3 Silent p.G158G 0.16 TCGA-CV-A45Z-01 10 50916407 50916407 G T C10orf53 Missense_Mutation p.G73V 0.13 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-CV-A45Z-01 10 55626433 55626433 C T PCDH15 Missense_Mutation p.G1229E 0.11 deleterious(0) probably_damaging(0.992) TCGA-CV-A45Z-01 10 55755479 55755479 C G PCDH15 Missense_Mutation p.G933A 0.16 tolerated(0.48) probably_damaging(0.928) TCGA-CV-A45Z-01 10 60558836 60558836 C A BICC1 Missense_Mutation p.L517I 0.11 tolerated(0.07) probably_damaging(0.996) TCGA-CV-A45Z-01 10 63450371 63450371 G A C10orf107 Missense_Mutation p.G94R 0.15 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 10 67829214 67829214 C A CTNNA3 Nonsense_Mutation p.E671* 0.12 TCGA-CV-A45Z-01 10 68687156 68687156 G A LRRTM3 Missense_Mutation p.S161N 0.12 tolerated(0.43) benign(0.145) TCGA-CV-A45Z-01 10 69565540 69565540 C A DNAJC12 Missense_Mutation p.M101I 0.08 deleterious(0) possibly_damaging(0.688) TCGA-CV-A45Z-01 10 7214495 7214495 T G SFMBT2 Silent p.R705R 0.18 TCGA-CV-A45Z-01 10 73270874 73270874 C A CDH23-AS1 Intron 0.10 TCGA-CV-A45Z-01 10 75854095 75854095 G T VCL Silent p.L473L 0.17 TCGA-CV-A45Z-01 10 7745379 7745379 G T ITIH2 5'UTR 0.12 TCGA-CV-A45Z-01 10 79793646 79793646 G A RPS24 5'UTR 0.09 TCGA-CV-A45Z-01 10 863665 863665 C A LARP4B Missense_Mutation p.R565S 0.10 deleterious(0) benign(0.041) TCGA-CV-A45Z-01 10 87362005 87362005 G C GRID1 3'UTR 0.40 TCGA-CV-A45Z-01 10 88477873 88477873 G T LDB3 Missense_Mutation p.C615F 0.13 deleterious(0) probably_damaging(0.993) TCGA-CV-A45Z-01 10 96018842 96018842 A T PLCE1 Missense_Mutation p.E1250V 0.16 deleterious(0) benign(0.394) TCGA-CV-A45Z-01 10 98923185 98923185 C A SLIT1 Missense_Mutation p.G98V 0.11 tolerated(0.32) benign(0.003) TCGA-CV-A45Z-01 11 102563717 102563717 G C MMP27 Missense_Mutation p.H417D 0.19 tolerated(1) benign(0.001) TCGA-CV-A45Z-01 11 104776205 104776205 C G RP11-693N9.2 RNA 0.18 TCGA-CV-A45Z-01 11 108381606 108381606 C A EXPH5 Missense_Mutation p.R1543I 0.11 tolerated(0.07) possibly_damaging(0.851) TCGA-CV-A45Z-01 11 111864411 111864411 C A DIXDC1 Missense_Mutation p.L461I 0.30 deleterious(0.04) possibly_damaging(0.54) TCGA-CV-A45Z-01 11 113856810 113856810 G A HTR3A Silent p.Q212Q 0.24 TCGA-CV-A45Z-01 11 114392596 114392596 C A NXPE1 3'UTR 0.21 TCGA-CV-A45Z-01 11 120744884 120744884 A T GRIK4 Missense_Mutation p.Q339L 0.20 tolerated(0.14) benign(0) TCGA-CV-A45Z-01 11 124252580 124252580 G A OR8B2 Silent p.F220F 0.08 TCGA-CV-A45Z-01 11 124908934 124908937 CAAC AAA CCDC15 Frame_Shift_Del p.N902Kfs*47 0.13 TCGA-CV-A45Z-01 11 1265896 1265896 C A MUC5B Missense_Mutation p.P2596T 0.18 unknown(0) TCGA-CV-A45Z-01 11 132306095 132306095 G A OPCML Silent p.N274N 0.10 TCGA-CV-A45Z-01 11 133714143 133714143 C A SPATA19 Missense_Mutation p.W119C 0.16 deleterious(0) probably_damaging(0.95) TCGA-CV-A45Z-01 11 134147782 134147782 C A GLB1L3 Missense_Mutation p.A113D 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-CV-A45Z-01 11 19077145 19077146 - T MRGPRX2 Frame_Shift_Ins p.S269Ifs*3 0.17 TCGA-CV-A45Z-01 11 30034131 30034131 C A KCNA4 Missense_Mutation p.R32M 0.11 deleterious_low_confidence(0) unknown(0) TCGA-CV-A45Z-01 11 50003617 50003617 G A OR4C12 Missense_Mutation p.L141F 0.16 tolerated_low_confidence(0.11) probably_damaging(0.911) TCGA-CV-A45Z-01 11 51412329 51412329 T G OR4A5 Missense_Mutation p.K23Q 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.646) TCGA-CV-A45Z-01 11 55111430 55111430 T C OR4A16 Missense_Mutation p.C252R 0.10 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CV-A45Z-01 11 55136372 55136372 G T OR4A15 Missense_Mutation p.G338V 0.10 tolerated_low_confidence(0.08) benign(0.004) TCGA-CV-A45Z-01 11 55406720 55406720 T A OR4P4 Missense_Mutation p.M296K 0.32 deleterious(0) benign(0.365) TCGA-CV-A45Z-01 11 55432896 55432896 C T OR4C6 Missense_Mutation p.S85F 0.15 tolerated_low_confidence(0.54) benign(0.025) TCGA-CV-A45Z-01 11 55432908 55432908 C G OR4C6 Missense_Mutation p.T89S 0.13 deleterious_low_confidence(0.04) benign(0.057) TCGA-CV-A45Z-01 11 55540934 55540934 T A OR5D13 Missense_Mutation p.N7K 0.15 deleterious(0.02) possibly_damaging(0.45) TCGA-CV-A45Z-01 11 55541282 55541282 C T OR5D13 Silent p.D123D 0.12 TCGA-CV-A45Z-01 11 55541466 55541466 G A OR5D13 Missense_Mutation p.V185I 0.07 deleterious(0) benign(0.117) TCGA-CV-A45Z-01 11 55587755 55587755 C A OR5D18 Missense_Mutation p.T217K 0.11 deleterious(0) possibly_damaging(0.477) TCGA-CV-A45Z-01 11 55606783 55606783 C A OR5D16 Missense_Mutation p.L186M 0.08 deleterious(0) probably_damaging(0.995) TCGA-CV-A45Z-01 11 55653619 55653619 G C TRIM51 Missense_Mutation p.M144I 0.19 deleterious(0.05) benign(0.15) TCGA-CV-A45Z-01 11 55658917 55658917 A C TRIM51 Missense_Mutation p.S390R 0.16 tolerated(0.25) benign(0.104) TCGA-CV-A45Z-01 11 55681516 55681516 G T OR5W2 Silent p.I181I 0.11 TCGA-CV-A45Z-01 11 55681737 55681737 C A OR5W2 Missense_Mutation p.A108S 0.22 tolerated(0.06) benign(0.12) TCGA-CV-A45Z-01 11 55872554 55872554 C T OR8H2 Silent p.D12D 0.07 TCGA-CV-A45Z-01 11 55904673 55904673 G T OR8J3 Silent p.I174I 0.07 TCGA-CV-A45Z-01 11 55944828 55944828 G A OR5J2 Silent p.L245L 0.13 TCGA-CV-A45Z-01 11 56020472 56020472 A G OR5T3 Missense_Mutation p.K266R 0.15 deleterious(0.03) possibly_damaging(0.651) TCGA-CV-A45Z-01 11 5602457 5602457 C G OR52B6 Missense_Mutation p.C117W 0.15 deleterious(0) probably_damaging(0.996) TCGA-CV-A45Z-01 11 56113724 56113724 A G OR8K1 Silent p.R70R 0.09 TCGA-CV-A45Z-01 11 56310644 56310644 C A OR5M11 Silent p.L30L 0.18 TCGA-CV-A45Z-01 11 57256844 57256844 G A SLC43A1 Silent p.S405S 0.13 TCGA-CV-A45Z-01 11 5799487 5799487 G A OR52N5 Silent p.L126L 0.27 TCGA-CV-A45Z-01 11 58034652 58034652 G C OR10W1 Missense_Mutation p.R227G 0.15 deleterious(0) possibly_damaging(0.837) TCGA-CV-A45Z-01 11 5809805 5809805 G A OR52N1 Missense_Mutation p.P81L 0.08 deleterious(0.01) benign(0.216) TCGA-CV-A45Z-01 11 58126459 58126459 C A OR5B17 Missense_Mutation p.M28I 0.07 tolerated_low_confidence(0.8) benign(0.001) TCGA-CV-A45Z-01 11 58602269 58602269 G C GLYATL2 Missense_Mutation p.A173G 0.17 deleterious(0.01) possibly_damaging(0.514) TCGA-CV-A45Z-01 11 58723315 58723315 G T GLYATL1 Missense_Mutation p.G273C 0.18 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 11 59224907 59224907 C T OR4D6 Silent p.I158I 0.06 TCGA-CV-A45Z-01 11 59814466 59814466 G T OOSP2 Missense_Mutation p.D133Y 0.13 deleterious(0.01) possibly_damaging(0.693) TCGA-CV-A45Z-01 11 609228 609228 G A PHRF1 Missense_Mutation p.D1257N 0.09 deleterious(0.02) possibly_damaging(0.908) TCGA-CV-A45Z-01 11 62010877 62010877 G T SCGB1D2 Missense_Mutation p.A58S 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Z-01 11 62529266 62529266 G T POLR2G Splice_Site p.X5_splice 0.07 TCGA-CV-A45Z-01 11 6432114 6432114 C A APBB1 Missense_Mutation p.G155V 0.15 tolerated(0.22) benign(0.016) TCGA-CV-A45Z-01 11 65827009 65827009 G T SF3B2 Missense_Mutation p.K448N 0.08 deleterious(0) possibly_damaging(0.697) TCGA-CV-A45Z-01 11 66083298 66083298 T G CD248 Missense_Mutation p.T401P 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.694) TCGA-CV-A45Z-01 11 68682420 68682420 G A IGHMBP2 Missense_Mutation p.D281N 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 11 69933903 69933903 G C ANO1 Missense_Mutation p.G52R 0.12 deleterious(0.02) probably_damaging(1) TCGA-CV-A45Z-01 11 7064265 7064265 G T NLRP14 Missense_Mutation p.E336D 0.09 tolerated(0.41) benign(0.077) TCGA-CV-A45Z-01 11 75146607 75146607 C - GDPD5 Frame_Shift_Del p.G588Afs*13 0.17 TCGA-CV-A45Z-01 11 85375310 85375310 G A CREBZF Nonsense_Mutation p.Q204* 0.35 TCGA-CV-A45Z-01 11 87883022 87883022 C A RAB38 Missense_Mutation p.A102S 0.05 tolerated(0.85) benign(0.004) TCGA-CV-A45Z-01 11 88300970 88300970 C A GRM5 Silent p.L627L 0.25 TCGA-CV-A45Z-01 11 89537433 89537433 G A TRIM49 Missense_Mutation p.H69Y 0.06 tolerated(1) benign(0.011) TCGA-CV-A45Z-01 11 92085509 92085509 G C FAT3 Missense_Mutation p.W77C 0.07 probably_damaging(0.928) TCGA-CV-A45Z-01 11 92531085 92531085 C G FAT3 Missense_Mutation p.Q1636E 0.18 possibly_damaging(0.526) TCGA-CV-A45Z-01 11 92533210 92533210 G T FAT3 Missense_Mutation p.G2344V 0.27 probably_damaging(1) TCGA-CV-A45Z-01 11 93837916 93837916 G A HEPHL1 Missense_Mutation p.A969T 0.07 deleterious(0) possibly_damaging(0.7) TCGA-CV-A45Z-01 11 95825981 95825981 G A MAML2 Missense_Mutation p.P405L 0.13 benign(0.124) TCGA-CV-A45Z-01 12 100797818 100797818 G T SLC17A8 Silent p.V352V 0.12 TCGA-CV-A45Z-01 12 101757447 101757447 T C UTP20 Missense_Mutation p.Y1962H 0.15 deleterious(0.04) possibly_damaging(0.894) TCGA-CV-A45Z-01 12 102492909 102492909 T G NUP37 Missense_Mutation p.S142R 0.19 deleterious(0.02) probably_damaging(0.961) TCGA-CV-A45Z-01 12 104712825 104712825 A T TXNRD1 Missense_Mutation p.R289W 0.11 deleterious(0) possibly_damaging(0.822) TCGA-CV-A45Z-01 12 107371512 107371512 T A MTERFD3 Silent p.P327P 0.12 TCGA-CV-A45Z-01 12 10787181 10787181 T G STYK1 Missense_Mutation p.S13R 0.14 deleterious(0.03) benign(0.145) TCGA-CV-A45Z-01 12 109882284 109882284 A T MYO1H Missense_Mutation p.K965N 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 12 11149518 11149518 A G TAS2R20 3'UTR 0.18 TCGA-CV-A45Z-01 12 111948252 111948252 G A ATXN2 Missense_Mutation p.P725S 0.11 benign(0.145) TCGA-CV-A45Z-01 12 111948253 111948253 A T ATXN2 Silent p.I724I 0.11 TCGA-CV-A45Z-01 12 117612563 117612563 T C FBXO21 Missense_Mutation p.D211G 0.12 deleterious(0.01) benign(0.046) TCGA-CV-A45Z-01 12 120128040 120128040 C G CIT Silent p.R2034R 0.29 TCGA-CV-A45Z-01 12 130184735 130184735 C G TMEM132D Silent p.L196L 0.20 TCGA-CV-A45Z-01 12 13906601 13906601 G T GRIN2B Silent p.L220L 0.09 TCGA-CV-A45Z-01 12 14993444 14993444 C G ART4 Missense_Mutation p.R263T 0.14 tolerated(0.06) benign(0.085) TCGA-CV-A45Z-01 12 1940644 1940644 G A LRTM2 Missense_Mutation p.C204Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 12 19436567 19436567 T C PLEKHA5 Missense_Mutation p.I556T 0.12 deleterious(0.01) benign(0.097) TCGA-CV-A45Z-01 12 20876088 20876088 C A SLCO1C1 Missense_Mutation p.S362R 0.07 deleterious(0) probably_damaging(0.937) TCGA-CV-A45Z-01 12 21242848 21242848 C T SLCO1B7 Silent p.A577A 0.11 TCGA-CV-A45Z-01 12 25148769 25148769 A G C12orf77 Missense_Mutation p.W127R 0.11 tolerated_low_confidence(0.17) probably_damaging(0.934) TCGA-CV-A45Z-01 12 29514589 29514589 T A ERGIC2 Missense_Mutation p.K121N 0.09 deleterious(0.01) benign(0.128) TCGA-CV-A45Z-01 12 31244783 31244783 G T DDX11 Missense_Mutation p.S407I 0.09 deleterious(0) probably_damaging(0.993) TCGA-CV-A45Z-01 12 32134587 32134587 A G KIAA1551 Missense_Mutation p.K233R 0.14 tolerated(0.06) probably_damaging(0.951) TCGA-CV-A45Z-01 12 39079366 39079366 A C CPNE8 Silent p.A399A 0.10 TCGA-CV-A45Z-01 12 41966950 41966950 C A PDZRN4 Nonsense_Mutation p.S790* 0.11 TCGA-CV-A45Z-01 12 42491768 42491768 A - GXYLT1 Frame_Shift_Del p.L311Qfs*11 0.09 TCGA-CV-A45Z-01 12 42853666 42853666 G T PRICKLE1 Missense_Mutation p.T814K 0.11 tolerated(1) possibly_damaging(0.476) TCGA-CV-A45Z-01 12 4855336 4855336 C A GALNT8 Missense_Mutation p.A362D 0.10 deleterious(0) possibly_damaging(0.86) TCGA-CV-A45Z-01 12 49438749 49438749 C G KMT2D Splice_Site p.X1581_splice 0.08 TCGA-CV-A45Z-01 12 50191129 50191129 C T NCKAP5L Missense_Mutation p.A172T 0.20 tolerated(0.53) benign(0.003) TCGA-CV-A45Z-01 12 50388083 50388083 G A RACGAP1 Silent p.D390D 0.10 TCGA-CV-A45Z-01 12 50488229 50488229 G A SMARCD1 Silent p.P381P 0.05 TCGA-CV-A45Z-01 12 52377833 52377833 G T ACVR1B Missense_Mutation p.G329W 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 12 52886474 52886474 T C KRT6A Missense_Mutation p.I167V 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 12 60169119 60169119 G A SLC16A7 Missense_Mutation p.G348D 0.08 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 12 6125388 6125388 C A VWF Missense_Mutation p.L1774F 0.17 deleterious(0) probably_damaging(0.961) TCGA-CV-A45Z-01 12 64196035 64196035 T A TMEM5 Missense_Mutation p.V198D 0.20 deleterious(0) probably_damaging(0.97) TCGA-CV-A45Z-01 12 66765603 66765603 C G GRIP1 Silent p.R909R 0.10 TCGA-CV-A45Z-01 12 6692238 6692238 C T CHD4 Missense_Mutation p.V1368M 0.10 tolerated(0.1) probably_damaging(0.961) TCGA-CV-A45Z-01 12 68647178 68647178 G T IL22 Silent p.A17A 0.10 TCGA-CV-A45Z-01 12 75436912 75436912 A G KCNC2 Silent p.S630S 0.09 TCGA-CV-A45Z-01 12 7559182 7559182 C G CD163L1 Missense_Mutation p.G345R 0.12 tolerated(0.34) benign(0.375) TCGA-CV-A45Z-01 12 75601341 75601341 C A KCNC2 Missense_Mutation p.W141C 0.22 deleterious(0) probably_damaging(0.992) TCGA-CV-A45Z-01 12 75601342 75601342 C A KCNC2 Missense_Mutation p.W141L 0.22 deleterious(0.03) benign(0.261) TCGA-CV-A45Z-01 12 76844736 76844736 G C OSBPL8 Missense_Mutation p.L38V 0.11 deleterious_low_confidence(0.02) benign(0.023) TCGA-CV-A45Z-01 12 8202111 8202111 G A FOXJ2 Missense_Mutation p.R494H 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-CV-A45Z-01 12 86373324 86373324 C A MGAT4C Missense_Mutation p.V394L 0.12 deleterious(0.03) benign(0.303) TCGA-CV-A45Z-01 12 93131235 93131235 G T PLEKHG7 5'UTR 0.07 TCGA-CV-A45Z-01 12 95927971 95927971 C G USP44 Missense_Mutation p.S21T 0.10 deleterious(0.01) benign(0) TCGA-CV-A45Z-01 12 96350685 96350685 C T AMDHD1 Missense_Mutation p.R178W 0.11 deleterious(0) possibly_damaging(0.766) TCGA-CV-A45Z-01 12 98989533 98989533 G A SLC25A3 Intron 0.06 TCGA-CV-A45Z-01 13 101717900 101717900 G T NALCN Missense_Mutation p.T1487K 0.12 deleterious(0) benign(0.031) TCGA-CV-A45Z-01 13 102359162 102359162 C T ITGBL1 Missense_Mutation p.L397F 0.08 tolerated(0.1) benign(0.217) TCGA-CV-A45Z-01 13 103473469 103473469 A G BIVM Missense_Mutation p.M230V 0.13 deleterious(0.05) benign(0.006) TCGA-CV-A45Z-01 13 108518289 108518289 G T FAM155A Nonsense_Mutation p.S219* 0.12 TCGA-CV-A45Z-01 13 22088518 22088518 C A MICU2 Missense_Mutation p.V213L 0.11 tolerated(0.35) benign(0.001) TCGA-CV-A45Z-01 13 22088519 22088519 T G MICU2 Silent p.T212T 0.12 TCGA-CV-A45Z-01 13 25341455 25341455 G T RNF17 Missense_Mutation p.C59F 0.16 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-CV-A45Z-01 13 25435502 25435502 T C RNF17 Missense_Mutation p.C1291R 0.19 deleterious(0) probably_damaging(0.99) TCGA-CV-A45Z-01 13 25670479 25670479 C G PABPC3 Missense_Mutation p.T48S 0.09 tolerated(0.11) possibly_damaging(0.783) TCGA-CV-A45Z-01 13 29275565 29275565 T G SLC46A3 Intron 0.18 TCGA-CV-A45Z-01 13 29599464 29599464 C A MTUS2 Missense_Mutation p.P220H 0.09 tolerated(0.06) possibly_damaging(0.855) TCGA-CV-A45Z-01 13 32968936 32968936 A G BRCA2 Missense_Mutation p.S3123G 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 13 33638153 33638153 G A KL Missense_Mutation p.E957K 0.15 tolerated(0.47) benign(0.003) TCGA-CV-A45Z-01 13 35517223 35517223 G C NBEA Missense_Mutation p.R89T 0.08 deleterious(0) probably_damaging(0.996) TCGA-CV-A45Z-01 13 35733267 35733267 C A NBEA Missense_Mutation p.L987I 0.16 tolerated(0.54) benign(0.023) TCGA-CV-A45Z-01 13 39446936 39446936 G C FREM2 Missense_Mutation p.V2681L 0.11 tolerated(0.1) benign(0.172) TCGA-CV-A45Z-01 13 39451320 39451320 C A FREM2 Missense_Mutation p.L2871I 0.11 tolerated(0.14) benign(0.232) TCGA-CV-A45Z-01 13 42877762 42877762 A G AKAP11 Missense_Mutation p.Y1627C 0.09 tolerated(0.71) benign(0.001) TCGA-CV-A45Z-01 13 46562942 46562942 C G ZC3H13 Missense_Mutation p.R412P 0.16 unknown(0) TCGA-CV-A45Z-01 13 46562943 46562943 G A ZC3H13 Nonsense_Mutation p.R412* 0.16 TCGA-CV-A45Z-01 13 47409465 47409465 C G HTR2A Missense_Mutation p.G308A 0.25 deleterious(0.04) probably_damaging(0.92) TCGA-CV-A45Z-01 13 58206756 58206756 C A PCDH17 Missense_Mutation p.P26T 0.12 deleterious(0.02) possibly_damaging(0.9) TCGA-CV-A45Z-01 13 58208088 58208088 C A PCDH17 Missense_Mutation p.P470T 0.13 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 13 58299101 58299101 A T PCDH17 Missense_Mutation p.K1051N 0.12 tolerated_low_confidence(0.07) benign(0.085) TCGA-CV-A45Z-01 13 61986079 61986079 C G PCDH20 Missense_Mutation p.G718A 0.15 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 13 70549780 70549780 C A KLHL1 Missense_Mutation p.V218F 0.14 deleterious(0.02) benign(0.049) TCGA-CV-A45Z-01 13 77754439 77754439 G T MYCBP2 Silent p.I1614I 0.11 TCGA-CV-A45Z-01 13 92345617 92345617 G A GPC5 Missense_Mutation p.D168N 0.15 deleterious(0.03) possibly_damaging(0.651) TCGA-CV-A45Z-01 14 101201300 101201300 T A DLK1 3'UTR 0.16 TCGA-CV-A45Z-01 14 105410568 105410570 CTG A AHNAK2 Frame_Shift_Del p.Q3740Cfs*21 0.09 TCGA-CV-A45Z-01 14 20216276 20216276 C A OR4Q3 Missense_Mutation p.F230L 0.07 tolerated(0.16) benign(0.007) TCGA-CV-A45Z-01 14 20249052 20249052 A G OR4M1 Missense_Mutation p.N191D 0.09 tolerated(1) benign(0.003) TCGA-CV-A45Z-01 14 36008849 36008849 C T RALGAPA1 Missense_Mutation p.V2051I 0.09 tolerated(0.31) benign(0.022) TCGA-CV-A45Z-01 14 42360920 42360920 C A LRFN5 Nonsense_Mutation p.S618* 0.10 TCGA-CV-A45Z-01 14 44976261 44976261 C T FSCB 5'UTR 0.18 TCGA-CV-A45Z-01 14 47530580 47530580 G A MDGA2 Missense_Mutation p.P466L 0.10 deleterious(0.03) probably_damaging(1) TCGA-CV-A45Z-01 14 51446241 51446241 G T TRIM9 Missense_Mutation p.A645D 0.14 deleterious(0.05) benign(0.034) TCGA-CV-A45Z-01 14 52734927 52734927 T G PTGDR Missense_Mutation p.L132R 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 14 71542912 71542912 A G PCNX Missense_Mutation p.I1705V 0.09 deleterious(0.03) probably_damaging(0.982) TCGA-CV-A45Z-01 14 74086131 74086131 C T ACOT6 Missense_Mutation p.T71I 0.14 tolerated(0.11) benign(0.415) TCGA-CV-A45Z-01 14 94158124 94158124 C T UNC79 Silent p.F2296F 0.19 TCGA-CV-A45Z-01 14 94700898 94700898 G T PPP4R4 Splice_Site p.X208_splice 0.17 TCGA-CV-A45Z-01 14 94964292 94964292 C G SERPINA12 Missense_Mutation p.R148P 0.09 tolerated(0.13) benign(0.012) TCGA-CV-A45Z-01 14 96730474 96730474 G A BDKRB1 Missense_Mutation p.R152K 0.15 tolerated(0.74) benign(0.11) TCGA-CV-A45Z-01 15 100332965 100332965 G T AC090825.1 3'Flank 0.07 TCGA-CV-A45Z-01 15 102312119 102312119 C A RN7SL209P 3'Flank 0.14 TCGA-CV-A45Z-01 15 102346367 102346367 T C OR4F6 Missense_Mutation p.W149R 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-A45Z-01 15 20495386 20495386 G C CHEK2P2 RNA 0.06 TCGA-CV-A45Z-01 15 22332452 22332452 T A RP11-69H14.6 RNA 0.06 TCGA-CV-A45Z-01 15 23006585 23006585 A T NIPA2 Missense_Mutation p.L240Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Z-01 15 25207307 25207307 G C SNURF Missense_Mutation p.V21L 0.12 tolerated_low_confidence(0.22) benign(0.013) TCGA-CV-A45Z-01 15 25449569 25449569 G A SNORD115-19 RNA 0.11 TCGA-CV-A45Z-01 15 27222233 27222233 C A GABRG3 Missense_Mutation p.D46E 0.17 tolerated(0.51) probably_damaging(0.982) TCGA-CV-A45Z-01 15 28478644 28478644 G C HERC2 Missense_Mutation p.T1472R 0.08 benign(0.185) TCGA-CV-A45Z-01 15 33878308 33878308 G T RYR3 Silent p.R593R 0.12 TCGA-CV-A45Z-01 15 34376500 34376500 C A EMC7 3'UTR 0.16 TCGA-CV-A45Z-01 15 34649797 34649797 C A NUTM1 3'UTR 0.12 TCGA-CV-A45Z-01 15 35045322 35045322 C A GJD2 Missense_Mutation p.R108L 0.11 tolerated(0.12) benign(0.376) TCGA-CV-A45Z-01 15 39544644 39544644 T C C15orf54 Missense_Mutation p.I103T 0.15 tolerated_low_confidence(0.08) probably_damaging(0.917) TCGA-CV-A45Z-01 15 40591370 40591370 G A PLCB2 Silent p.S214S 0.10 TCGA-CV-A45Z-01 15 44029037 44029037 C A RNU6-354P 5'Flank 0.16 TCGA-CV-A45Z-01 15 45047302 45047302 C A TRIM69 Missense_Mutation p.L71M 0.15 tolerated(0.11) benign(0.039) TCGA-CV-A45Z-01 15 49924488 49924488 A C DTWD1 Missense_Mutation p.K133Q 0.12 tolerated(0.29) benign(0.01) TCGA-CV-A45Z-01 15 51837835 51837835 G T DMXL2 Missense_Mutation p.A292D 0.15 tolerated(0.52) benign(0.106) TCGA-CV-A45Z-01 15 54307054 54307054 G T UNC13C Nonsense_Mutation p.E652* 0.09 TCGA-CV-A45Z-01 15 55783354 55783354 T A DYX1C1 Missense_Mutation p.E124D 0.07 deleterious(0.03) possibly_damaging(0.83) TCGA-CV-A45Z-01 15 63950815 63950815 C G HERC1 Missense_Mutation p.R3176T 0.14 probably_damaging(0.989) TCGA-CV-A45Z-01 15 65703521 65703521 G A IGDCC4 Silent p.H86H 0.09 TCGA-CV-A45Z-01 15 70960221 70960221 C A UACA Silent p.S934S 0.11 TCGA-CV-A45Z-01 15 75311215 75311215 T A SCAMP5 Missense_Mutation p.V200E 0.15 deleterious(0.02) benign(0.355) TCGA-CV-A45Z-01 15 91035846 91035846 G T IQGAP1 Missense_Mutation p.A1511S 0.10 tolerated(0.61) benign(0.003) TCGA-CV-A45Z-01 16 19056251 19056251 G T TMC7 Silent p.T461T 0.15 TCGA-CV-A45Z-01 16 20693763 20693763 G A ACSM1 Silent p.T142T 0.11 TCGA-CV-A45Z-01 16 21136649 21136649 C A DNAH3 Missense_Mutation p.E417D 0.12 tolerated(0.48) benign(0.001) TCGA-CV-A45Z-01 16 2161344 2161344 C A PKD1 Missense_Mutation p.G1275V 0.33 benign(0.008) TCGA-CV-A45Z-01 16 242964 242964 C T LUC7L Silent p.R246R 0.15 TCGA-CV-A45Z-01 16 24942604 24942604 G T ARHGAP17 Silent p.T672T 0.13 TCGA-CV-A45Z-01 16 30106424 30106424 A G YPEL3 Missense_Mutation p.V92A 0.16 tolerated(0.23) benign(0.101) TCGA-CV-A45Z-01 16 30410328 30410328 G T ZNF48 Missense_Mutation p.R586L 0.08 tolerated(1) benign(0.006) TCGA-CV-A45Z-01 16 30510662 30510662 G - ITGAL Frame_Shift_Del p.R666Pfs*34 0.09 TCGA-CV-A45Z-01 16 30594427 30594427 G A ZNF785 Silent p.G224G 0.15 TCGA-CV-A45Z-01 16 3293081 3293081 A C MEFV 3'UTR 0.28 TCGA-CV-A45Z-01 16 3304456 3304456 G T MEFV Silent p.R204R 0.17 TCGA-CV-A45Z-01 16 3786795 3786795 C A CREBBP Missense_Mutation p.W1472C 0.27 unknown(0) TCGA-CV-A45Z-01 16 47117401 47117401 C T NETO2 Missense_Mutation p.D437N 0.14 deleterious(0) possibly_damaging(0.796) TCGA-CV-A45Z-01 16 4873864 4873864 G A GLYR1 Silent p.A194A 0.33 TCGA-CV-A45Z-01 16 51174491 51174491 G C SALL1 Missense_Mutation p.L548V 0.12 tolerated(0.07) possibly_damaging(0.764) TCGA-CV-A45Z-01 16 51175462 51175462 A T SALL1 Missense_Mutation p.L224Q 0.13 deleterious(0.04) possibly_damaging(0.613) TCGA-CV-A45Z-01 16 53404855 53404855 C T RP11-44F14.1 RNA 0.13 TCGA-CV-A45Z-01 16 61851570 61851570 G A CDH8 Missense_Mutation p.P364S 0.17 tolerated(0.12) benign(0.01) TCGA-CV-A45Z-01 16 64984719 64984719 C A CDH11 Silent p.L615L 0.10 TCGA-CV-A45Z-01 16 66975088 66975088 G A CES2 Missense_Mutation p.R357Q 0.12 deleterious(0.01) possibly_damaging(0.538) TCGA-CV-A45Z-01 16 7726776 7726776 G C RBFOX1 Missense_Mutation p.G332R 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-CV-A45Z-01 16 848821 848821 C T GNG13 Silent p.L34L 0.15 TCGA-CV-A45Z-01 16 89865362 89865362 C G FANCA Intron 0.14 TCGA-CV-A45Z-01 16 90124900 90124900 G T PRDM7 Missense_Mutation p.P426T 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-CV-A45Z-01 17 10253892 10253892 C G MYH13 Silent p.A375A 0.11 TCGA-CV-A45Z-01 17 10322097 10322097 C G MYH8 Missense_Mutation p.V126L 0.12 deleterious(0.03) benign(0.013) TCGA-CV-A45Z-01 17 10357072 10357072 G C MYH4 Missense_Mutation p.T941R 0.09 deleterious(0) possibly_damaging(0.824) TCGA-CV-A45Z-01 17 10419286 10419286 G A MYH1 Silent p.H154H 0.09 TCGA-CV-A45Z-01 17 11687677 11687677 A G DNAH9 Missense_Mutation p.S2628G 0.14 benign(0.002) TCGA-CV-A45Z-01 17 11865334 11865334 G A DNAH9 Missense_Mutation p.E4332K 0.06 possibly_damaging(0.793) TCGA-CV-A45Z-01 17 18148389 18148389 T C FLII 3'UTR 0.13 TCGA-CV-A45Z-01 17 19285706 19285706 G T MAPK7 Missense_Mutation p.G697V 0.18 tolerated(0.08) unknown(0) TCGA-CV-A45Z-01 17 26961885 26961885 C A KIAA0100 Missense_Mutation p.R907I 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 17 3030084 3030084 A T OR1G1 Silent p.T254T 0.10 TCGA-CV-A45Z-01 17 33768387 33768387 T A SLFN13 Splice_Site p.X641_splice 0.13 TCGA-CV-A45Z-01 17 35549119 35549119 C T ACACA Missense_Mutation p.G1443E 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 17 38652502 38652502 C A TNS4 Missense_Mutation p.C59F 0.12 tolerated(0.38) benign(0.002) TCGA-CV-A45Z-01 17 39383397 39383397 G T KRTAP9-2 Missense_Mutation p.C164F 0.11 deleterious(0) probably_damaging(0.987) TCGA-CV-A45Z-01 17 42328879 42328879 C - SLC4A1 Frame_Shift_Del p.V797Sfs*32 0.22 TCGA-CV-A45Z-01 17 47117419 47117419 G A IGF2BP1 Missense_Mutation p.E262K 0.08 deleterious(0) possibly_damaging(0.721) TCGA-CV-A45Z-01 17 48917855 48917855 G A WFIKKN2 Nonsense_Mutation p.W402* 0.15 TCGA-CV-A45Z-01 17 54428209 54428209 A G ANKFN1 Missense_Mutation p.N94D 0.14 deleterious(0.02) benign(0.034) TCGA-CV-A45Z-01 17 57057541 57057541 C A PPM1E Missense_Mutation p.R473S 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-CV-A45Z-01 17 61566339 61566339 C G ACE Nonsense_Mutation p.Y829* 0.09 TCGA-CV-A45Z-01 17 68128152 68128152 C G KCNJ16 5'UTR 0.27 TCGA-CV-A45Z-01 17 7414793 7414793 G A POLR2A Silent p.K1329K 0.21 TCGA-CV-A45Z-01 17 7578290 7578290 C T TP53 Splice_Site p.X187_splice 0.30 TCGA-CV-A45Z-01 17 7578455 7578455 C G TP53 Missense_Mutation p.A159P 0.21 deleterious(0) probably_damaging(0.991) TCGA-CV-A45Z-01 17 79073836 79073836 A C BAIAP2 Missense_Mutation p.K200Q 0.17 deleterious(0.01) possibly_damaging(0.877) TCGA-CV-A45Z-01 17 79517459 79517459 C A C17orf70 Missense_Mutation p.G354V 0.17 tolerated(0.11) benign(0.167) TCGA-CV-A45Z-01 18 22805260 22805260 C T ZNF521 Silent p.G874G 0.11 TCGA-CV-A45Z-01 18 2909754 2909754 G T EMILIN2 Missense_Mutation p.G921W 0.07 tolerated(0.19) probably_damaging(0.98) TCGA-CV-A45Z-01 18 29218661 29218661 C A B4GALT6 Silent p.L178L 0.17 TCGA-CV-A45Z-01 18 30092734 30092734 C A WBP11P1 RNA 0.14 TCGA-CV-A45Z-01 18 31323053 31323053 A G ASXL3 Missense_Mutation p.S1081G 0.11 probably_damaging(0.993) TCGA-CV-A45Z-01 18 46287933 46287933 G C CTIF Missense_Mutation p.R417P 0.12 tolerated(0.06) benign(0.373) TCGA-CV-A45Z-01 18 50918126 50918126 G T DCC Missense_Mutation p.V853L 0.10 tolerated(0.32) benign(0.038) TCGA-CV-A45Z-01 18 61309123 61309123 C A SERPINB4 Splice_Site p.X75_splice 0.07 TCGA-CV-A45Z-01 18 63477204 63477204 A T CDH7 Missense_Mutation p.T159S 0.09 tolerated(0.46) benign(0.004) TCGA-CV-A45Z-01 18 64172127 64172127 A G CDH19 Silent p.Y747Y 0.11 TCGA-CV-A45Z-01 18 65178592 65178592 C T DSEL Missense_Mutation p.R1095K 0.10 tolerated(0.44) benign(0.008) TCGA-CV-A45Z-01 18 8394531 8394531 C A PTPRM Silent p.L1422L 0.18 TCGA-CV-A45Z-01 18 8394532 8394532 C A PTPRM Silent p.R1423R 0.16 TCGA-CV-A45Z-01 19 10271081 10271081 C A DNMT1 Missense_Mutation p.R341L 0.09 tolerated(0.71) benign(0.007) TCGA-CV-A45Z-01 19 10464866 10464866 G A TYK2 Silent p.N920N 0.16 TCGA-CV-A45Z-01 19 12501532 12501532 A G ZNF799 Silent p.Y560Y 0.08 TCGA-CV-A45Z-01 19 13063836 13063836 C A RAD23A Silent p.L355L 0.11 TCGA-CV-A45Z-01 19 13919658 13919658 G C ZSWIM4 Missense_Mutation p.D241H 0.27 deleterious(0) probably_damaging(0.934) TCGA-CV-A45Z-01 19 14043638 14043638 G T PODNL1 Silent p.G473G 0.11 TCGA-CV-A45Z-01 19 15586580 15586580 T C PGLYRP2 Missense_Mutation p.S301G 0.17 tolerated(0.21) benign(0.008) TCGA-CV-A45Z-01 19 16040321 16040321 G A CYP4F11 Missense_Mutation p.P97S 0.07 tolerated(0.06) benign(0.363) TCGA-CV-A45Z-01 19 17886905 17886905 C A FCHO1 Missense_Mutation p.P373T 0.10 tolerated(0.61) benign(0.003) TCGA-CV-A45Z-01 19 18368452 18368452 T A KIAA1683 Silent p.T1214T 0.25 TCGA-CV-A45Z-01 19 18856674 18856674 C T CRTC1 Silent p.T111T 0.08 TCGA-CV-A45Z-01 19 19612150 19612150 G C GATAD2A Silent p.R475R 0.26 TCGA-CV-A45Z-01 19 21605835 21605835 G T ZNF493 Missense_Mutation p.G125V 0.12 tolerated(0.22) possibly_damaging(0.814) TCGA-CV-A45Z-01 19 21990520 21990520 T C ZNF43 Silent p.Q773Q 0.12 TCGA-CV-A45Z-01 19 31768095 31768095 G A TSHZ3 Silent p.I868I 0.15 TCGA-CV-A45Z-01 19 33470870 33470870 G T RHPN2 3'UTR 0.14 TCGA-CV-A45Z-01 19 36430792 36430792 C A LRFN3 Silent p.A155A 0.19 TCGA-CV-A45Z-01 19 41509945 41509945 G T CYP2B6 Nonsense_Mutation p.G71* 0.11 TCGA-CV-A45Z-01 19 41938121 41938121 G C ATP5SL 3'UTR 0.14 TCGA-CV-A45Z-01 19 42351701 42351701 C A DMRTC2 Missense_Mutation p.H69N 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A45Z-01 19 42482334 42482334 G A ATP1A3 Missense_Mutation p.A605V 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 19 42566966 42566966 G T GRIK5 Missense_Mutation p.P96T 0.15 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 19 43428834 43428834 A T PSG7 3'UTR 0.15 TCGA-CV-A45Z-01 19 44500505 44500505 C T ZNF155 Missense_Mutation p.P177S 0.12 tolerated(0.17) benign(0.053) TCGA-CV-A45Z-01 19 47991528 47991528 G A NAPA 3'UTR 0.15 TCGA-CV-A45Z-01 19 4816226 4816226 C T TICAM1 3'UTR 0.14 TCGA-CV-A45Z-01 19 48588343 48588343 C A PLA2G4C Missense_Mutation p.A283S 0.14 tolerated(0.79) benign(0.051) TCGA-CV-A45Z-01 19 48954341 48954341 G T GRWD1 Silent p.R292R 0.15 TCGA-CV-A45Z-01 19 50412511 50412511 G T NUP62 Missense_Mutation p.P185H 0.21 tolerated(0.55) benign(0.43) TCGA-CV-A45Z-01 19 51875749 51875749 A G NKG7 Missense_Mutation p.L14P 0.12 deleterious(0) probably_damaging(0.995) TCGA-CV-A45Z-01 19 52448286 52448286 A G ZNF613 Missense_Mutation p.K384E 0.11 deleterious(0.01) possibly_damaging(0.882) TCGA-CV-A45Z-01 19 52497498 52497498 T A ZNF615 Silent p.I288I 0.06 TCGA-CV-A45Z-01 19 53208371 53208371 C A ZNF611 Missense_Mutation p.G646V 0.12 deleterious(0.01) probably_damaging(1) TCGA-CV-A45Z-01 19 54297343 54297343 G A NLRP12 Missense_Mutation p.A1049V 0.16 tolerated(0.11) benign(0.096) TCGA-CV-A45Z-01 19 54872773 54872773 C G LAIR1 Silent p.V38V 0.11 TCGA-CV-A45Z-01 19 55378234 55378234 C T KIR3DL2 3'UTR 0.07 TCGA-CV-A45Z-01 19 56249551 56249551 G T NLRP9 Missense_Mutation p.P64T 0.10 tolerated(0.05) probably_damaging(0.986) TCGA-CV-A45Z-01 19 56423073 56423073 C A NLRP13 Nonsense_Mutation p.E704* 0.15 TCGA-CV-A45Z-01 19 56935074 56935074 G C ZNF583 Missense_Mutation p.E349D 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-CV-A45Z-01 19 57089767 57089767 C T ZNF470 Missense_Mutation p.A657V 0.13 deleterious(0.02) possibly_damaging(0.756) TCGA-CV-A45Z-01 19 57640633 57640633 C T USP29 Missense_Mutation p.T197I 0.21 tolerated(0.15) benign(0.326) TCGA-CV-A45Z-01 19 57796025 57796025 G T ZNF460 Missense_Mutation p.C46F 0.08 deleterious(0.03) possibly_damaging(0.905) TCGA-CV-A45Z-01 19 58153291 58153291 A G ZNF211 Silent p.R544R 0.11 TCGA-CV-A45Z-01 19 58190154 58190154 C A ZSCAN4 Missense_Mutation p.P395T 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 19 7120746 7120746 T C INSR Missense_Mutation p.R1182G 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 19 7810929 7810929 C T CD209 Missense_Mutation p.D75N 0.13 deleterious(0.04) benign(0.199) TCGA-CV-A45Z-01 19 8661981 8661981 G A ADAMTS10 Silent p.S310S 0.07 TCGA-CV-A45Z-01 19 9009597 9009597 C A MUC16 Silent p.L13043L 0.14 TCGA-CV-A45Z-01 19 9087443 9087443 C - MUC16 Frame_Shift_Del p.A1458Qfs*4 0.18 TCGA-CV-A45Z-01 19 9271381 9271381 A T ZNF317 Missense_Mutation p.R354W 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Z-01 1 101705599 101705599 C T S1PR1 Silent p.S353S 0.15 TCGA-CV-A45Z-01 1 104115725 104115725 G T AMY2B Missense_Mutation p.G119V 0.15 deleterious(0.03) probably_damaging(0.97) TCGA-CV-A45Z-01 1 114682431 114682431 G A SYT6 Silent p.L21L 0.11 TCGA-CV-A45Z-01 1 115167942 115167942 C T DENND2C Missense_Mutation p.E222K 0.14 deleterious(0.04) probably_damaging(0.97) TCGA-CV-A45Z-01 1 118165857 118165857 G A FAM46C Missense_Mutation p.G123S 0.17 deleterious(0.03) probably_damaging(0.979) TCGA-CV-A45Z-01 1 118629544 118629544 G T SPAG17 Missense_Mutation p.H483N 0.13 deleterious(0) probably_damaging(0.996) TCGA-CV-A45Z-01 1 119965036 119965036 C T HSD3B2 Silent p.L304L 0.11 TCGA-CV-A45Z-01 1 12726225 12726225 T G AADACL4 Missense_Mutation p.F235V 0.10 deleterious(0.02) benign(0.216) TCGA-CV-A45Z-01 1 12954995 12954995 C G PRAMEF10 Missense_Mutation p.R96S 0.10 deleterious(0) possibly_damaging(0.499) TCGA-CV-A45Z-01 1 1341264 1341264 G C MRPL20 Silent p.L67L 0.06 TCGA-CV-A45Z-01 1 151006322 151006322 A G PRUNE Missense_Mutation p.K325R 0.12 tolerated(0.48) benign(0.005) TCGA-CV-A45Z-01 1 152129375 152129375 C A RPTN Missense_Mutation p.G67V 0.14 deleterious(0) probably_damaging(0.98) TCGA-CV-A45Z-01 1 152648545 152648545 C A LCE2C Silent p.P18P 0.09 TCGA-CV-A45Z-01 1 152856902 152856902 T A SMCP Missense_Mutation p.C2S 0.15 tolerated_low_confidence(0.28) benign(0.291) TCGA-CV-A45Z-01 1 155257696 155257696 C T HCN3 Silent p.A589A 0.18 TCGA-CV-A45Z-01 1 155271182 155271182 G A PKLR Missense_Mutation p.S2L 0.17 deleterious_low_confidence(0) benign(0.078) TCGA-CV-A45Z-01 1 157514800 157514800 G T FCRL5 Missense_Mutation p.A127E 0.19 tolerated(0.2) benign(0.025) TCGA-CV-A45Z-01 1 158326717 158326717 G T CD1E 3'UTR 0.23 TCGA-CV-A45Z-01 1 158390342 158390342 G T OR10K2 Silent p.L105L 0.08 TCGA-CV-A45Z-01 1 158651364 158651364 G T SPTA1 Missense_Mutation p.Q162K 0.11 deleterious(0.04) benign(0.042) TCGA-CV-A45Z-01 1 159283536 159283536 C T OR10J3 Missense_Mutation p.R305H 0.14 tolerated(0.54) benign(0.011) TCGA-CV-A45Z-01 1 159558474 159558474 C G APCS Missense_Mutation p.I216M 0.17 deleterious(0.01) possibly_damaging(0.888) TCGA-CV-A45Z-01 1 166987073 166987073 C G MAEL Missense_Mutation p.I306M 0.26 deleterious(0) probably_damaging(0.962) TCGA-CV-A45Z-01 1 171251202 171251202 G C FMO1 Missense_Mutation p.E305Q 0.18 deleterious(0.05) probably_damaging(0.928) TCGA-CV-A45Z-01 1 171753398 171753398 G A METTL13 Silent p.E224E 0.10 TCGA-CV-A45Z-01 1 175105997 175105997 G A TNN Silent p.A1156A 0.09 TCGA-CV-A45Z-01 1 175334226 175334226 G T TNR Missense_Mutation p.P836Q 0.10 deleterious(0.01) probably_damaging(1) TCGA-CV-A45Z-01 1 176526028 176526028 G A PAPPA2 Silent p.R190R 0.10 TCGA-CV-A45Z-01 1 176863966 176863966 C A ASTN1 Missense_Mutation p.G891V 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-CV-A45Z-01 1 180885891 180885891 C G KIAA1614 Missense_Mutation p.P218A 0.17 tolerated(0.25) benign(0.009) TCGA-CV-A45Z-01 1 186072767 186072767 A G HMCN1 Silent p.G3579G 0.12 TCGA-CV-A45Z-01 1 196303149 196303149 C A KCNT2 Missense_Mutation p.A609S 0.29 tolerated(0.75) benign(0.001) TCGA-CV-A45Z-01 1 196654239 196654239 C A CFH Missense_Mutation p.P279H 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 1 196881917 196881917 G T CFHR4 Nonsense_Mutation p.E348* 0.15 TCGA-CV-A45Z-01 1 196971713 196971713 T A CFHR5 Missense_Mutation p.C417S 0.19 deleterious(0) possibly_damaging(0.847) TCGA-CV-A45Z-01 1 197008535 197008535 C A F13B Silent p.L653L 0.11 TCGA-CV-A45Z-01 1 197029517 197029517 G C F13B Missense_Mutation p.P262A 0.10 deleterious(0.03) probably_damaging(1) TCGA-CV-A45Z-01 1 197404338 197404338 T C CRB1 Silent p.G1115G 0.11 TCGA-CV-A45Z-01 1 197890699 197890699 T G LHX9 Missense_Mutation p.Y215D 0.15 deleterious(0.03) benign(0.265) TCGA-CV-A45Z-01 1 200628172 200628172 T C DDX59 Missense_Mutation p.I349V 0.16 tolerated(0.45) benign(0.032) TCGA-CV-A45Z-01 1 204092250 204092250 G T SOX13 Missense_Mutation p.S382I 0.12 tolerated(0.05) benign(0.128) TCGA-CV-A45Z-01 1 205119875 205119875 C A DSTYK Missense_Mutation p.K800N 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-CV-A45Z-01 1 207222688 207222688 G C YOD1 Missense_Mutation p.Q242E 0.11 tolerated(0.09) probably_damaging(0.999) TCGA-CV-A45Z-01 1 216052385 216052385 T C USH2A Missense_Mutation p.H2760R 0.12 benign(0) TCGA-CV-A45Z-01 1 217604614 217604614 C A GPATCH2 Missense_Mutation p.G487V 0.13 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 1 220440038 220440038 C A RAB3GAP2 Intron 0.10 TCGA-CV-A45Z-01 1 22047643 22047643 C - USP48 Frame_Shift_Del p.V594Wfs*12 0.08 TCGA-CV-A45Z-01 1 220978449 220978449 G T MARC1 Missense_Mutation p.C270F 0.14 deleterious(0) probably_damaging(0.986) TCGA-CV-A45Z-01 1 223408281 223408281 A T SUSD4 Intron 0.11 TCGA-CV-A45Z-01 1 230846521 230846521 C A AGT Missense_Mutation p.A26S 0.13 tolerated(0.07) benign(0.021) TCGA-CV-A45Z-01 1 235377328 235377328 T C ARID4B Missense_Mutation p.K533E 0.08 tolerated(0.16) probably_damaging(0.987) TCGA-CV-A45Z-01 1 236924444 236924444 G C ACTN2 Missense_Mutation p.A833P 0.19 tolerated(0.12) probably_damaging(1) TCGA-CV-A45Z-01 1 240370353 240370353 C A FMN2 Silent p.S747S 0.25 TCGA-CV-A45Z-01 1 240656763 240656763 G T GREM2 Missense_Mutation p.L5I 0.17 tolerated_low_confidence(0.3) benign(0.012) TCGA-CV-A45Z-01 1 247614723 247614723 C A OR2B11 Missense_Mutation p.V188L 0.14 tolerated(1) benign(0.014) TCGA-CV-A45Z-01 1 247654595 247654596 CA - OR2W5 RNA 0.11 TCGA-CV-A45Z-01 1 247655379 247655379 G A OR2W5 RNA 0.10 TCGA-CV-A45Z-01 1 247769226 247769226 C T OR2G3 Silent p.I113I 0.18 TCGA-CV-A45Z-01 1 247920913 247920913 G A OR1C1 Missense_Mutation p.H266Y 0.19 tolerated(0.26) benign(0.14) TCGA-CV-A45Z-01 1 248344306 248344306 T C OR2M2 Missense_Mutation p.L340P 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-CV-A45Z-01 1 248789670 248789670 A T OR2T11 Missense_Mutation p.Y254N 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 1 39781291 39781291 T G MACF1 Missense_Mutation p.L1131R 0.08 probably_damaging(0.953) TCGA-CV-A45Z-01 1 44450609 44450609 G A B4GALT2 Missense_Mutation p.A237T 0.17 tolerated(0.15) benign(0.001) TCGA-CV-A45Z-01 1 45480282 45480282 C A UROD Intron 0.19 TCGA-CV-A45Z-01 1 52242582 52242582 G A OSBPL9 Silent p.L426L 0.09 TCGA-CV-A45Z-01 1 53544425 53544425 C A PODN Missense_Mutation p.R463S 0.09 deleterious(0.02) possibly_damaging(0.705) TCGA-CV-A45Z-01 1 57411648 57411648 G T C8B Missense_Mutation p.F317L 0.10 deleterious(0.02) benign(0.206) TCGA-CV-A45Z-01 1 70504981 70504981 G A LRRC7 Silent p.V1120V 0.13 TCGA-CV-A45Z-01 1 74649196 74649196 G C LRRIQ3 Nonsense_Mutation p.S58* 0.11 TCGA-CV-A45Z-01 1 887966 887966 C A NOC2L Silent p.T339T 0.09 TCGA-CV-A45Z-01 1 89849845 89849845 G T GBP6 Missense_Mutation p.K554N 0.33 deleterious(0.01) probably_damaging(0.931) TCGA-CV-A45Z-01 1 89890146 89890146 C T GBP1P1 Intron 0.12 TCGA-CV-A45Z-01 1 949561 949561 C A ISG15 Silent p.P67P 0.10 TCGA-CV-A45Z-01 1 98157300 98157300 A T DPYD Silent p.I245I 0.11 TCGA-CV-A45Z-01 1 99772116 99772116 C A LPPR4 Missense_Mutation p.D614E 0.15 tolerated(0.4) benign(0.015) TCGA-CV-A45Z-01 20 15913980 15913980 G T MACROD2 Missense_Mutation p.A279S 0.18 tolerated(0.09) benign(0.247) TCGA-CV-A45Z-01 20 16506793 16506793 C G KIF16B Missense_Mutation p.D59H 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 20 23065565 23065565 C G CD93 Missense_Mutation p.G422A 0.15 tolerated(0.19) benign(0.21) TCGA-CV-A45Z-01 20 2397912 2397912 G T TGM6 Silent p.A457A 0.25 TCGA-CV-A45Z-01 20 31828129 31828129 C G BPIFA1 Missense_Mutation p.I173M 0.12 deleterious(0.02) possibly_damaging(0.694) TCGA-CV-A45Z-01 20 36634635 36634635 C - TTI1 Frame_Shift_Del p.A823Qfs*40 0.09 TCGA-CV-A45Z-01 20 43043208 43043208 C T HNF4A Missense_Mutation p.A185V 0.16 tolerated(0.25) benign(0.015) TCGA-CV-A45Z-01 20 43851452 43851452 T G SEMG2 Silent p.P393P 0.17 TCGA-CV-A45Z-01 20 43944845 43944845 G T RBPJL Nonsense_Mutation p.E347* 0.14 TCGA-CV-A45Z-01 20 44519404 44519404 C A NEURL2 Missense_Mutation p.G76V 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 20 45927650 45927650 T C ZMYND8 Silent p.P92P 0.10 TCGA-CV-A45Z-01 20 52611551 52611551 C A BCAS1 Silent p.T309T 0.18 TCGA-CV-A45Z-01 20 5282735 5282735 G T PROKR2 Missense_Mutation p.T369N 0.16 tolerated(0.1) benign(0.03) TCGA-CV-A45Z-01 20 53208300 53208300 G T DOK5 Silent p.R185R 0.11 TCGA-CV-A45Z-01 20 55012398 55012398 C A CASS4 Missense_Mutation p.T72K 0.23 tolerated(0.37) benign(0.017) TCGA-CV-A45Z-01 20 55012464 55012464 C A CASS4 Nonsense_Mutation p.S94* 0.08 TCGA-CV-A45Z-01 20 5921954 5921954 G A TRMT6 Silent p.L384L 0.11 TCGA-CV-A45Z-01 20 62598849 62598849 G A ZNF512B Missense_Mutation p.T50I 0.19 deleterious_low_confidence(0) benign(0.073) TCGA-CV-A45Z-01 20 7915269 7915269 G A HAO1 Missense_Mutation p.P51S 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 20 896685 896685 C A ANGPT4 Missense_Mutation p.G58V 0.08 tolerated(0.27) benign(0.115) TCGA-CV-A45Z-01 20 9510312 9510312 C A LAMP5 Silent p.R230R 0.15 TCGA-CV-A45Z-01 21 10906930 10906930 C A TPTE Missense_Mutation p.S544I 0.10 tolerated_low_confidence(0.08) benign(0.011) TCGA-CV-A45Z-01 21 22710816 22710816 A T NCAM2 Nonsense_Mutation p.R336* 0.28 TCGA-CV-A45Z-01 21 22841059 22841059 C A NCAM2 Missense_Mutation p.D617E 0.14 deleterious(0) benign(0.374) TCGA-CV-A45Z-01 21 31744089 31744089 C T KRTAP13-2 Missense_Mutation p.R148H 0.12 tolerated(0.97) benign(0.004) TCGA-CV-A45Z-01 21 33057369 33057369 T A SCAF4 Silent p.S827S 0.11 TCGA-CV-A45Z-01 21 43816152 43816152 G T TMPRSS3 5'UTR 0.15 TCGA-CV-A45Z-01 21 44323586 44323586 C G NDUFV3 Missense_Mutation p.S155C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 21 47971582 47971582 G T DIP2A Missense_Mutation p.V959F 0.24 deleterious(0) probably_damaging(0.987) TCGA-CV-A45Z-01 22 21156362 21156362 G A PI4KA Silent p.T541T 0.12 TCGA-CV-A45Z-01 22 24145545 24145545 C T SMARCB1 Silent p.P188P 0.08 TCGA-CV-A45Z-01 22 30421781 30421781 T A MTMR3 Silent p.T1196T 0.08 TCGA-CV-A45Z-01 22 31032537 31032537 C T SLC35E4 Missense_Mutation p.P34S 0.50 tolerated(0.13) benign(0.003) TCGA-CV-A45Z-01 22 38019382 38019382 G A GGA1 Missense_Mutation p.E220K 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 22 39085050 39085050 C T JOSD1 Silent p.L133L 0.12 TCGA-CV-A45Z-01 22 39425401 39425401 C G APOBEC3D Missense_Mutation p.F213L 0.20 deleterious(0) possibly_damaging(0.881) TCGA-CV-A45Z-01 22 45312464 45312464 C A PHF21B Missense_Mutation p.G87V 0.20 tolerated_low_confidence(0.19) possibly_damaging(0.509) TCGA-CV-A45Z-01 22 50615643 50615643 G A PANX2 Missense_Mutation p.A168T 0.27 deleterious(0) probably_damaging(0.99) TCGA-CV-A45Z-01 2 101185443 101185443 G A PDCL3 Missense_Mutation p.E62K 0.08 tolerated(0.17) benign(0.365) TCGA-CV-A45Z-01 2 107460128 107460128 G T ST6GAL2 Silent p.S102S 0.09 TCGA-CV-A45Z-01 2 110927450 110927450 G T NPHP1 Nonsense_Mutation p.S152* 0.11 TCGA-CV-A45Z-01 2 113950127 113950127 G A PSD4 Missense_Mutation p.G600D 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 2 116593793 116593793 G T DPP10 Nonsense_Mutation p.G675* 0.17 TCGA-CV-A45Z-01 2 119914425 119914425 T C C1QL2 Missense_Mutation p.N273D 0.08 deleterious(0.01) possibly_damaging(0.796) TCGA-CV-A45Z-01 2 120834636 120834636 C G EPB41L5 Missense_Mutation p.L199V 0.07 tolerated(0.2) benign(0.425) TCGA-CV-A45Z-01 2 122522771 122522771 C G TSN Missense_Mutation p.T172S 0.05 tolerated(0.72) benign(0.001) TCGA-CV-A45Z-01 2 124783212 124783212 C A CNTNAP5 5'UTR 0.09 TCGA-CV-A45Z-01 2 125367480 125367480 T A CNTNAP5 Missense_Mutation p.V619E 0.10 deleterious(0) possibly_damaging(0.864) TCGA-CV-A45Z-01 2 1271305 1271305 T A SNTG2 Missense_Mutation p.F416I 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-CV-A45Z-01 2 128030530 128030530 T C ERCC3 Missense_Mutation p.I580V 0.11 deleterious(0) probably_damaging(0.91) TCGA-CV-A45Z-01 2 128865619 128865619 G C UGGT1 Missense_Mutation p.A129P 0.08 tolerated(1) benign(0.005) TCGA-CV-A45Z-01 2 131486858 131486858 C A GPR148 Missense_Mutation p.P45H 0.08 deleterious(0.01) possibly_damaging(0.894) TCGA-CV-A45Z-01 2 141115556 141115556 C A LRP1B Missense_Mutation p.C3796F 0.10 possibly_damaging(0.639) TCGA-CV-A45Z-01 2 141245234 141245234 G T LRP1B Silent p.P3065P 0.11 TCGA-CV-A45Z-01 2 149226129 149226129 G A MBD5 Missense_Mutation p.S206N 0.05 tolerated(0.76) benign(0.383) TCGA-CV-A45Z-01 2 149857292 149857292 C G KIF5C Missense_Mutation p.T790R 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-CV-A45Z-01 2 159196817 159196817 C T CCDC148 Silent p.Q141Q 0.20 TCGA-CV-A45Z-01 2 164468078 164468078 G T FIGN Silent p.L88L 0.08 TCGA-CV-A45Z-01 2 165586547 165586547 C A COBLL1 Missense_Mutation p.L103F 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-CV-A45Z-01 2 165997189 165997189 G T SCN3A Missense_Mutation p.T664K 0.14 tolerated(0.31) possibly_damaging(0.79) TCGA-CV-A45Z-01 2 166188020 166188020 C T SCN2A Missense_Mutation p.A777V 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 2 166245398 166245398 G T SCN2A Missense_Mutation p.M1694I 0.14 tolerated(0.16) benign(0.017) TCGA-CV-A45Z-01 2 168100627 168100627 G T XIRP2 Missense_Mutation p.V909F 0.11 probably_damaging(1) TCGA-CV-A45Z-01 2 168102625 168102625 G A XIRP2 Missense_Mutation p.D1575N 0.18 benign(0.113) TCGA-CV-A45Z-01 2 169763289 169763289 G C G6PC2 Missense_Mutation p.G186R 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-CV-A45Z-01 2 169764185 169764185 T A G6PC2 Missense_Mutation p.Y222N 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 2 174232411 174232411 C G CDCA7 3'UTR 0.14 TCGA-CV-A45Z-01 2 174943776 174943776 C G OLA1 Missense_Mutation p.D337H 0.26 deleterious(0) probably_damaging(0.974) TCGA-CV-A45Z-01 2 176812327 176812327 C A KIAA1715 Missense_Mutation p.G196V 0.07 tolerated(0.1) benign(0.014) TCGA-CV-A45Z-01 2 179451302 179451302 C T TTN Silent p.A21442A 0.12 TCGA-CV-A45Z-01 2 179463526 179463526 C T TTN Missense_Mutation p.V18971M 0.08 TCGA-CV-A45Z-01 2 179464352 179464352 G C TTN Missense_Mutation p.T18759S 0.08 TCGA-CV-A45Z-01 2 179476362 179476362 C A TTN Missense_Mutation p.G16865V 0.12 TCGA-CV-A45Z-01 2 179516625 179516625 G C TTN Missense_Mutation p.A13122G 0.27 TCGA-CV-A45Z-01 2 179547496 179547496 C G TTN Missense_Mutation p.E11008Q 0.19 TCGA-CV-A45Z-01 2 179586797 179586797 A G TTN Silent p.S7531S 0.05 TCGA-CV-A45Z-01 2 179587665 179587665 C A TTN Splice_Site p.X7321_splice 0.20 TCGA-CV-A45Z-01 2 179639863 179639863 G A TTN Missense_Mutation p.A2192V 0.08 TCGA-CV-A45Z-01 2 183104854 183104854 A T PDE1A Silent p.A127A 0.16 TCGA-CV-A45Z-01 2 199011586 199011586 G T PLCL1 Missense_Mutation p.G1063V 0.20 deleterious(0) probably_damaging(0.988) TCGA-CV-A45Z-01 2 204259499 204259499 C T ABI2 Missense_Mutation p.R213C 0.15 deleterious(0) probably_damaging(0.989) TCGA-CV-A45Z-01 2 204354463 204354463 T A RAPH1 Silent p.S192S 0.09 TCGA-CV-A45Z-01 2 21231683 21231683 C A APOB Missense_Mutation p.W2686L 0.07 probably_damaging(0.994) TCGA-CV-A45Z-01 2 21234969 21234969 A T APOB Missense_Mutation p.F1591I 0.11 benign(0.088) TCGA-CV-A45Z-01 2 215840691 215840691 G C ABCA12 Silent p.L1733L 0.09 TCGA-CV-A45Z-01 2 215840732 215840732 C T ABCA12 Missense_Mutation p.D1720N 0.14 tolerated(0.22) benign(0.017) TCGA-CV-A45Z-01 2 219294366 219294366 C T VIL1 Missense_Mutation p.R273W 0.09 deleterious(0.02) benign(0.011) TCGA-CV-A45Z-01 2 220172280 220172280 C A PTPRN Splice_Site p.X56_splice 0.12 TCGA-CV-A45Z-01 2 228173617 228173617 A T COL4A3 Missense_Mutation p.T1489S 0.12 unknown(0) TCGA-CV-A45Z-01 2 228476311 228476311 C G C2orf83 Missense_Mutation p.Q84H 0.15 deleterious_low_confidence(0) benign(0.216) TCGA-CV-A45Z-01 2 228680244 228680244 C A CCL20 Silent p.R51R 0.12 TCGA-CV-A45Z-01 2 232262911 232262911 C T B3GNT7 Missense_Mutation p.R161W 0.21 tolerated(0.06) benign(0.009) TCGA-CV-A45Z-01 2 238457904 238457904 A G MLPH Missense_Mutation p.N553S 0.09 tolerated(0.64) benign(0.007) TCGA-CV-A45Z-01 2 239342233 239342233 G T ASB1 Missense_Mutation p.D30Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-CV-A45Z-01 2 241570357 241570357 C T GPR35 3'UTR 0.10 TCGA-CV-A45Z-01 2 27157445 27157445 G T DPYSL5 Splice_Site p.X264_splice 0.18 TCGA-CV-A45Z-01 2 27746223 27746223 G A GCKR Missense_Mutation p.E599K 0.13 tolerated(0.13) possibly_damaging(0.566) TCGA-CV-A45Z-01 2 30480387 30480387 T A LBH Missense_Mutation p.V73E 0.17 deleterious(0) probably_damaging(0.997) TCGA-CV-A45Z-01 2 30480389 30480389 G A LBH Missense_Mutation p.E74K 0.17 deleterious(0) probably_damaging(0.994) TCGA-CV-A45Z-01 2 33498785 33498785 G C LTBP1 Missense_Mutation p.V894L 0.11 tolerated(0.14) benign(0.345) TCGA-CV-A45Z-01 2 33783350 33783350 C G RASGRP3 Missense_Mutation p.P551R 0.16 tolerated(0.38) benign(0.063) TCGA-CV-A45Z-01 2 3596679 3596679 C A RNASEH1 Missense_Mutation p.G178V 0.06 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 2 48915725 48915725 G A LHCGR Missense_Mutation p.A404V 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 2 50280412 50280412 G T NRXN1 Missense_Mutation p.S1415R 0.14 tolerated(0.15) benign(0.001) TCGA-CV-A45Z-01 2 50765424 50765424 C A NRXN1 Nonsense_Mutation p.G744* 0.20 TCGA-CV-A45Z-01 2 56419951 56419951 G A CCDC85A Missense_Mutation p.D206N 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 2 65299049 65299049 C A CEP68 Nonsense_Mutation p.Y273* 0.14 TCGA-CV-A45Z-01 2 67637286 67637286 G T ETAA1 3'UTR 0.10 TCGA-CV-A45Z-01 2 68873003 68873003 C A PROKR1 Missense_Mutation p.T17N 0.08 tolerated(0.29) benign(0.002) TCGA-CV-A45Z-01 2 7035912 7035912 C G RSAD2 Missense_Mutation p.R309G 0.11 deleterious(0.01) possibly_damaging(0.687) TCGA-CV-A45Z-01 2 74761258 74761258 G T LOXL3 Missense_Mutation p.T682K 0.09 deleterious(0.01) possibly_damaging(0.839) TCGA-CV-A45Z-01 2 80801427 80801427 G T CTNNA2 Silent p.V627V 0.07 TCGA-CV-A45Z-01 2 86071517 86071517 A G ST3GAL5 Splice_Site p.X336_splice 0.14 TCGA-CV-A45Z-01 2 88751557 88751557 G T FOXI3 RNA 0.20 TCGA-CV-A45Z-01 2 8890400 8890400 C G KIDINS220 Missense_Mutation p.E1086Q 0.11 tolerated(0.12) possibly_damaging(0.529) TCGA-CV-A45Z-01 2 89156940 89156940 G T IGKC Silent p.A86A 0.10 TCGA-CV-A45Z-01 3 10145981 10145981 G T FANCD2OS Missense_Mutation p.L160I 0.25 deleterious(0.03) probably_damaging(0.978) TCGA-CV-A45Z-01 3 113286509 113286509 G T SIDT1 Missense_Mutation p.G156V 0.11 tolerated(0.12) benign(0.094) TCGA-CV-A45Z-01 3 113955929 113955929 C A ZNF80 5'UTR 0.11 TCGA-CV-A45Z-01 3 119526084 119526084 G A NR1I2 Missense_Mutation p.G35D 0.11 deleterious_low_confidence(0.01) benign(0.278) TCGA-CV-A45Z-01 3 12198380 12198380 C A TIMP4 Missense_Mutation p.D98Y 0.30 tolerated(0.24) benign(0.166) TCGA-CV-A45Z-01 3 126751349 126751349 G T PLXNA1 Missense_Mutation p.C1784F 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 3 130284003 130284003 A T COL6A6 Missense_Mutation p.E276V 0.19 tolerated(0.09) benign(0.181) TCGA-CV-A45Z-01 3 130674973 130674973 G T ATP2C1 Missense_Mutation p.S295I 0.11 deleterious(0) possibly_damaging(0.906) TCGA-CV-A45Z-01 3 133119065 133119065 C A BFSP2 Silent p.A46A 0.09 TCGA-CV-A45Z-01 3 133473404 133473404 C A TF Missense_Mutation p.L131I 0.18 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 3 137849968 137849968 G C A4GNT Missense_Mutation p.A44G 0.08 tolerated(0.4) benign(0.001) TCGA-CV-A45Z-01 3 141497567 141497567 G A GRK7 Silent p.V147V 0.06 TCGA-CV-A45Z-01 3 146166994 146166994 A G PLSCR2 Missense_Mutation p.I288T 0.12 deleterious(0.01) possibly_damaging(0.885) TCGA-CV-A45Z-01 3 150916865 150916865 G T GPR171 Silent p.I103I 0.08 TCGA-CV-A45Z-01 3 16268944 16268944 G T GALNT15 Silent p.P619P 0.24 TCGA-CV-A45Z-01 3 164735340 164735340 G C SI Missense_Mutation p.P1252R 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 3 164735341 164735341 G T SI Missense_Mutation p.P1252T 0.10 deleterious(0) probably_damaging(0.995) TCGA-CV-A45Z-01 3 176768329 176768329 C A TBL1XR1 Missense_Mutation p.R166L 0.13 tolerated(0.07) benign(0.143) TCGA-CV-A45Z-01 3 180688083 180688083 G C FXR1 Missense_Mutation p.D514H 0.15 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-CV-A45Z-01 3 183580544 183580544 T A PARL Missense_Mutation p.T170S 0.15 tolerated(0.22) benign(0.029) TCGA-CV-A45Z-01 3 18458394 18458394 C T SATB1 Missense_Mutation p.G130R 0.17 deleterious(0) probably_damaging(0.995) TCGA-CV-A45Z-01 3 185169139 185169139 G C MAP3K13 Missense_Mutation p.A412P 0.18 tolerated(0.06) benign(0.141) TCGA-CV-A45Z-01 3 185252694 185252694 T C LIPH Silent p.V92V 0.09 TCGA-CV-A45Z-01 3 191075800 191075800 G - CCDC50 Frame_Shift_Del p.A43Hfs*25 0.19 TCGA-CV-A45Z-01 3 191861799 191861799 T A FGF12 Nonstop_Mutation p.*244Lext*53 0.10 TCGA-CV-A45Z-01 3 193132481 193132481 G T ATP13A4 Silent p.I967I 0.10 TCGA-CV-A45Z-01 3 193232586 193232586 G T ATP13A4 Silent p.I45I 0.13 TCGA-CV-A45Z-01 3 23960061 23960061 T A RPL15 Silent p.V101V 0.13 TCGA-CV-A45Z-01 3 32995458 32995458 C A CCR4 Missense_Mutation p.R182S 0.15 tolerated(0.87) benign(0.087) TCGA-CV-A45Z-01 3 33576820 33576820 T C CLASP2 Missense_Mutation p.Y1239C 0.11 deleterious(0) probably_damaging(0.95) TCGA-CV-A45Z-01 3 38645243 38645243 T A SCN5A Missense_Mutation p.H617L 0.21 tolerated(0.8) benign(0.001) TCGA-CV-A45Z-01 3 38888794 38888794 G T SCN11A Silent p.I1589I 0.23 TCGA-CV-A45Z-01 3 39226294 39226294 A T XIRP1 Missense_Mutation p.L1548Q 0.14 deleterious(0.04) benign(0.144) TCGA-CV-A45Z-01 3 45872444 45872444 T A LZTFL1 Missense_Mutation p.K187N 0.16 tolerated(0.16) benign(0.005) TCGA-CV-A45Z-01 3 47455260 47455260 C A SCAP 3'UTR 0.16 TCGA-CV-A45Z-01 3 47460903 47460903 G T SCAP Missense_Mutation p.P619T 0.19 tolerated(0.58) benign(0.001) TCGA-CV-A45Z-01 3 48309548 48309548 C G ZNF589 Missense_Mutation p.P123A 0.15 tolerated(0.06) benign(0.014) TCGA-CV-A45Z-01 3 48610629 48610629 G A COL7A1 Missense_Mutation p.P2231L 0.18 possibly_damaging(0.713) TCGA-CV-A45Z-01 3 52526152 52526152 A C NISCH Missense_Mutation p.Y1390S 0.18 deleterious(0) probably_damaging(0.969) TCGA-CV-A45Z-01 3 53814125 53814125 G T CACNA1D Missense_Mutation p.V1574F 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Z-01 3 58191210 58191210 G T DNASE1L3 Missense_Mutation p.A103D 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-CV-A45Z-01 3 73453527 73453527 G T PDZRN3 Missense_Mutation p.S313Y 0.19 deleterious(0) probably_damaging(0.96) TCGA-CV-A45Z-01 3 89259051 89259051 C T EPHA3 Silent p.I65I 0.11 TCGA-CV-A45Z-01 3 97806633 97806633 C G OR5AC2 Missense_Mutation p.A206G 0.07 tolerated(1) benign(0.021) TCGA-CV-A45Z-01 3 97868351 97868351 G C OR5H14 Missense_Mutation p.G41A 0.07 deleterious(0) possibly_damaging(0.54) TCGA-CV-A45Z-01 4 105412265 105412265 C T CXXC4 Missense_Mutation p.R232H 0.15 tolerated(0.12) probably_damaging(0.979) TCGA-CV-A45Z-01 4 108608319 108608319 T C PAPSS1 Silent p.A142A 0.11 TCGA-CV-A45Z-01 4 118005950 118005950 A T TRAM1L1 Silent p.I200I 0.16 TCGA-CV-A45Z-01 4 119951385 119951385 A G SYNPO2 Silent p.P485P 0.19 TCGA-CV-A45Z-01 4 123314743 123314743 G T ADAD1 Splice_Site p.X177_splice 0.18 TCGA-CV-A45Z-01 4 126336532 126336532 A T FAT4 Silent p.T2138T 0.17 TCGA-CV-A45Z-01 4 126411375 126411375 G T FAT4 Silent p.V4466V 0.08 TCGA-CV-A45Z-01 4 134072289 134072289 G T PCDH10 Missense_Mutation p.D332Y 0.09 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 4 138450881 138450881 C T PCDH18 Missense_Mutation p.G788R 0.16 tolerated(0.25) possibly_damaging(0.822) TCGA-CV-A45Z-01 4 15063786 15063786 A G CPEB2 Missense_Mutation p.K927E 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-A45Z-01 4 153249524 153249524 C A FBXW7 Silent p.V418V 0.13 TCGA-CV-A45Z-01 4 153565595 153565595 C T TMEM154 Splice_Site p.X122_splice 0.19 TCGA-CV-A45Z-01 4 156634659 156634659 C G GUCY1A3 Missense_Mutation p.P499R 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 4 156638394 156638394 G T GUCY1A3 Missense_Mutation p.M552I 0.14 deleterious(0) probably_damaging(0.913) TCGA-CV-A45Z-01 4 156825226 156825226 G C TDO2 Missense_Mutation p.G31A 0.12 tolerated(0.07) benign(0.314) TCGA-CV-A45Z-01 4 162508697 162508697 T A FSTL5 Missense_Mutation p.T309S 0.10 deleterious(0.03) probably_damaging(0.977) TCGA-CV-A45Z-01 4 166795134 166795134 G C TLL1 Missense_Mutation p.W26C 0.12 tolerated_low_confidence(0.18) benign(0.001) TCGA-CV-A45Z-01 4 169201591 169201591 C A DDX60 Missense_Mutation p.D625Y 0.13 deleterious(0) possibly_damaging(0.897) TCGA-CV-A45Z-01 4 175565066 175565066 G T GLRA3 Silent p.I422I 0.14 TCGA-CV-A45Z-01 4 178897009 178897009 C A LINC01098 Missense_Mutation p.T71K 0.07 tolerated_low_confidence(0.34) possibly_damaging(0.617) TCGA-CV-A45Z-01 4 183659646 183659646 A T TENM3 Missense_Mutation p.N1110Y 0.17 deleterious(0) possibly_damaging(0.902) TCGA-CV-A45Z-01 4 186320766 186320766 G C ANKRD37 Missense_Mutation p.W105C 0.20 deleterious(0.01) possibly_damaging(0.907) TCGA-CV-A45Z-01 4 186427757 186427757 G C PDLIM3 Missense_Mutation p.H238D 0.08 deleterious(0) benign(0.066) TCGA-CV-A45Z-01 4 188924561 188924561 G T ZFP42 Missense_Mutation p.R200S 0.12 tolerated(0.06) benign(0.004) TCGA-CV-A45Z-01 4 2822453 2822453 G T SH3BP2 Missense_Mutation p.G94C 0.24 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 4 44450346 44450346 G C KCTD8 Silent p.V65V 0.16 TCGA-CV-A45Z-01 4 46043027 46043027 C A GABRG1 Missense_Mutation p.W459L 0.15 deleterious(0) probably_damaging(0.99) TCGA-CV-A45Z-01 4 47682191 47682191 C A CORIN Missense_Mutation p.D367Y 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 4 48097200 48097200 A T TXK Missense_Mutation p.L181I 0.24 tolerated(0.15) benign(0.237) TCGA-CV-A45Z-01 4 52869413 52869413 G A LRRC66 Silent p.A214A 0.09 TCGA-CV-A45Z-01 4 55144595 55144595 G T PDGFRA Missense_Mutation p.R690M 0.12 deleterious(0) possibly_damaging(0.844) TCGA-CV-A45Z-01 4 5627630 5627630 C T EVC2 Missense_Mutation p.G631E 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 4 62453100 62453100 G T LPHN3 Missense_Mutation p.A71S 0.24 tolerated(0.14) possibly_damaging(0.856) TCGA-CV-A45Z-01 4 70620441 70620441 A T SULT1B1 Missense_Mutation p.I75N 0.12 deleterious(0.01) probably_damaging(1) TCGA-CV-A45Z-01 4 71507981 71507981 G T ENAM Missense_Mutation p.G280W 0.09 deleterious(0) probably_damaging(0.944) TCGA-CV-A45Z-01 4 727519 727519 G T PCGF3 Missense_Mutation p.C17F 0.12 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 4 73013189 73013189 A T NPFFR2 Missense_Mutation p.Q410L 0.14 tolerated(0.06) possibly_damaging(0.507) TCGA-CV-A45Z-01 4 74043124 74043124 T C ANKRD17 Missense_Mutation p.R174G 0.16 possibly_damaging(0.813) TCGA-CV-A45Z-01 4 74274354 74274354 G T ALB Missense_Mutation p.R105L 0.11 deleterious(0.02) benign(0.071) TCGA-CV-A45Z-01 4 77817743 77817743 T C SOWAHB Silent p.E420E 0.17 TCGA-CV-A45Z-01 4 79434686 79434686 A G FRAS1 Missense_Mutation p.Y3385C 0.14 benign(0.088) TCGA-CV-A45Z-01 4 82369429 82369429 T C RASGEF1B Missense_Mutation p.R150G 0.17 tolerated(0.11) benign(0.003) TCGA-CV-A45Z-01 4 85562099 85562099 C T CDS1 Nonsense_Mutation p.Q330* 0.09 TCGA-CV-A45Z-01 4 90035011 90035011 G A TIGD2 Missense_Mutation p.A296T 0.12 tolerated(0.38) benign(0.021) TCGA-CV-A45Z-01 4 91229651 91229651 T A CCSER1 Missense_Mutation p.H72Q 0.14 tolerated(0.07) probably_damaging(0.997) TCGA-CV-A45Z-01 4 91230449 91230449 G C CCSER1 Silent p.P338P 0.14 TCGA-CV-A45Z-01 4 91230659 91230659 A G CCSER1 Silent p.K408K 0.09 TCGA-CV-A45Z-01 4 94376932 94376932 A T GRID2 Silent p.T555T 0.11 TCGA-CV-A45Z-01 4 94377085 94377086 - A GRID2 Frame_Shift_Ins p.N607Kfs*56 0.10 TCGA-CV-A45Z-01 4 96106222 96106222 C T UNC5C Silent p.K754K 0.10 TCGA-CV-A45Z-01 4 96469911 96469911 G T UNC5C Missense_Mutation p.A33D 0.16 tolerated(0.15) possibly_damaging(0.665) TCGA-CV-A45Z-01 4 96761560 96761560 G T PDHA2 Missense_Mutation p.G87C 0.14 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Z-01 4 96761821 96761821 G A PDHA2 Missense_Mutation p.G174S 0.16 deleterious(0.02) possibly_damaging(0.794) TCGA-CV-A45Z-01 5 102493941 102493941 T C PPIP5K2 Silent p.G513G 0.12 TCGA-CV-A45Z-01 5 11364835 11364835 G T CTNND2 Missense_Mutation p.H449N 0.12 tolerated(0.18) benign(0.01) TCGA-CV-A45Z-01 5 118970399 118970399 G T FAM170A Missense_Mutation p.G319V 0.20 tolerated_low_confidence(0.07) possibly_damaging(0.857) TCGA-CV-A45Z-01 5 1244418 1244418 G A SLC6A18 Missense_Mutation p.A476T 0.10 deleterious(0.02) possibly_damaging(0.819) TCGA-CV-A45Z-01 5 129072757 129072757 C G ADAMTS19 Intron 0.10 TCGA-CV-A45Z-01 5 129520044 129520044 C A CHSY3 Nonsense_Mutation p.Y403* 0.18 TCGA-CV-A45Z-01 5 129521390 129521390 G T CHSY3 Missense_Mutation p.G852V 0.24 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 5 131822538 131822538 T C IRF1 Splice_Site p.X122_splice 0.13 TCGA-CV-A45Z-01 5 137534413 137534413 T A CDC23 Missense_Mutation p.Y238F 0.14 tolerated(0.09) benign(0.068) TCGA-CV-A45Z-01 5 139930263 139930263 G A SRA1 3'UTR 0.11 TCGA-CV-A45Z-01 5 140176235 140176235 G A PCDHA2 Silent p.A562A 0.26 TCGA-CV-A45Z-01 5 140476414 140476414 G T PCDHB2 Silent p.P680P 0.18 TCGA-CV-A45Z-01 5 140515407 140515407 C G PCDHB5 Missense_Mutation p.P131A 0.16 deleterious_low_confidence(0) possibly_damaging(0.577) TCGA-CV-A45Z-01 5 140553068 140553068 G T PCDHB7 Missense_Mutation p.G218C 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-A45Z-01 5 140559491 140559491 C G PCDHB8 Missense_Mutation p.R626G 0.19 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CV-A45Z-01 5 140588845 140588845 G T PCDHB12 Missense_Mutation p.Q122H 0.09 tolerated_low_confidence(0.24) benign(0.001) TCGA-CV-A45Z-01 5 140590744 140590744 G C PCDHB12 Silent p.V755V 0.15 TCGA-CV-A45Z-01 5 140595731 140595731 C A PCDHB13 Missense_Mutation p.T679N 0.12 tolerated_low_confidence(0.16) benign(0.002) TCGA-CV-A45Z-01 5 140773203 140773203 G C PCDHGA8 Missense_Mutation p.G275R 0.10 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CV-A45Z-01 5 140788984 140788984 G T PCDHGB6 Silent p.V405V 0.21 TCGA-CV-A45Z-01 5 141017811 141017811 G A RELL2 Missense_Mutation p.D7N 0.11 tolerated_low_confidence(0.05) benign(0.179) TCGA-CV-A45Z-01 5 14488184 14488184 G T TRIO Missense_Mutation p.G2483C 0.16 benign(0.058) TCGA-CV-A45Z-01 5 150502540 150502540 T C ANXA6 Missense_Mutation p.T391A 0.22 tolerated(0.66) benign(0.026) TCGA-CV-A45Z-01 5 153077648 153077648 C A GRIA1 Silent p.T403T 0.09 TCGA-CV-A45Z-01 5 156482381 156482381 G C HAVCR1 Silent p.T70T 0.11 TCGA-CV-A45Z-01 5 156915444 156915444 G T ADAM19 Silent p.P793P 0.12 TCGA-CV-A45Z-01 5 157053715 157053715 C A SOX30 Missense_Mutation p.S632I 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A45Z-01 5 159344561 159344561 G A ADRA1B Missense_Mutation p.A217T 0.09 tolerated(0.27) benign(0.01) TCGA-CV-A45Z-01 5 160097625 160097625 C A ATP10B Missense_Mutation p.D174Y 0.09 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 5 16067784 16067784 C A MARCH11 Silent p.R335R 0.14 TCGA-CV-A45Z-01 5 16670713 16670713 G T MYO10 Missense_Mutation p.N1935K 0.21 tolerated(0.21) benign(0.002) TCGA-CV-A45Z-01 5 173317390 173317390 T C CPEB4 Silent p.F218F 0.07 TCGA-CV-A45Z-01 5 175843329 175843329 C A CLTB Missense_Mutation p.E12D 0.37 tolerated(0.62) unknown(0) TCGA-CV-A45Z-01 5 176637201 176637201 A T NSD1 Nonsense_Mutation p.K601* 0.17 TCGA-CV-A45Z-01 5 179048345 179048345 C A HNRNPH1 Missense_Mutation p.G51C 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 5 179193027 179193027 C A MAML1 Missense_Mutation p.P339H 0.20 deleterious(0) possibly_damaging(0.759) TCGA-CV-A45Z-01 5 179564667 179564667 C T RASGEF1C Missense_Mutation p.E75K 0.28 tolerated(0.89) benign(0.002) TCGA-CV-A45Z-01 5 180477327 180477327 C T BTNL9 Missense_Mutation p.L232F 0.13 deleterious(0.03) benign(0.332) TCGA-CV-A45Z-01 5 21975242 21975242 C A CDH12 Missense_Mutation p.D162Y 0.08 deleterious(0.01) possibly_damaging(0.905) TCGA-CV-A45Z-01 5 26890054 26890054 T G CDH9 Missense_Mutation p.Q468P 0.07 tolerated(0.05) possibly_damaging(0.834) TCGA-CV-A45Z-01 5 32243655 32243655 C A MTMR12 Nonsense_Mutation p.E358* 0.14 TCGA-CV-A45Z-01 5 35957499 35957499 T C UGT3A1 Missense_Mutation p.N289S 0.20 tolerated(0.18) benign(0.044) TCGA-CV-A45Z-01 5 41382432 41382432 G T PLCXD3 Missense_Mutation p.P103H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 5 43656127 43656127 G A NNT Missense_Mutation p.G749S 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 5 446357 446357 G T EXOC3 Missense_Mutation p.V13L 0.08 tolerated(0.06) possibly_damaging(0.785) TCGA-CV-A45Z-01 5 45396631 45396631 T A HCN1 Missense_Mutation p.Q398L 0.15 deleterious(0) benign(0.038) TCGA-CV-A45Z-01 5 56219659 56219659 C G MIER3 Missense_Mutation p.D351H 0.14 deleterious(0) probably_damaging(0.996) TCGA-CV-A45Z-01 5 74034158 74034158 A T GFM2 Silent p.T435T 0.14 TCGA-CV-A45Z-01 5 89938734 89938734 T C GPR98 Missense_Mutation p.L810P 0.18 possibly_damaging(0.902) TCGA-CV-A45Z-01 5 89943405 89943405 A C GPR98 Missense_Mutation p.Y1038S 0.14 probably_damaging(0.961) TCGA-CV-A45Z-01 5 94922395 94922395 G T ARSK Missense_Mutation p.A277S 0.19 tolerated(0.06) possibly_damaging(0.85) TCGA-CV-A45Z-01 5 9629281 9629281 T C TAS2R1 Silent p.A288A 0.12 TCGA-CV-A45Z-01 6 101076996 101076996 T C ASCC3 Missense_Mutation p.I1424V 0.20 deleterious(0.02) possibly_damaging(0.896) TCGA-CV-A45Z-01 6 105474180 105474180 T A LIN28B Missense_Mutation p.L69Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 6 114181714 114181714 G T MARCKS Nonsense_Mutation p.E320* 0.17 TCGA-CV-A45Z-01 6 116446573 116446573 G C COL10A1 Missense_Mutation p.P28R 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-CV-A45Z-01 6 117677901 117677901 G A ROS1 Silent p.T1344T 0.13 TCGA-CV-A45Z-01 6 127899830 127899830 G T C6orf58 Splice_Site p.X101_splice 0.13 TCGA-CV-A45Z-01 6 129828772 129828772 G T LAMA2 Missense_Mutation p.G2948C 0.13 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 6 131206291 131206291 C T EPB41L2 Missense_Mutation p.R593K 0.11 tolerated(0.47) benign(0.031) TCGA-CV-A45Z-01 6 132029995 132029995 G T CTAGE9 Missense_Mutation p.F721L 0.10 tolerated(0.1) benign(0.065) TCGA-CV-A45Z-01 6 144508649 144508649 C A STX11 3'UTR 0.33 TCGA-CV-A45Z-01 6 144508651 144508651 G C STX11 3'UTR 0.35 TCGA-CV-A45Z-01 6 152536195 152536195 C A SYNE1 Nonsense_Mutation p.G7398* 0.08 TCGA-CV-A45Z-01 6 152603074 152603074 C A SYNE1 Missense_Mutation p.Q6083H 0.26 probably_damaging(0.997) TCGA-CV-A45Z-01 6 152652823 152652823 T G SYNE1 Missense_Mutation p.K4333Q 0.15 benign(0.018) TCGA-CV-A45Z-01 6 152755007 152755007 T C SYNE1 Missense_Mutation p.I1462V 0.22 probably_damaging(0.99) TCGA-CV-A45Z-01 6 158485661 158485661 G A SYNJ2 Missense_Mutation p.G413E 0.07 tolerated(0.09) benign(0.066) TCGA-CV-A45Z-01 6 24357841 24357841 G C DCDC2 Silent p.V46V 0.19 TCGA-CV-A45Z-01 6 25726735 25726735 C A HIST1H2AA Missense_Mutation p.Q7H 0.19 deleterious_low_confidence(0) unknown(0) TCGA-CV-A45Z-01 6 25862543 25862543 G T SLC17A3 Missense_Mutation p.S74Y 0.11 tolerated(0.32) possibly_damaging(0.781) TCGA-CV-A45Z-01 6 26031973 26031973 C T HIST1H3B Missense_Mutation p.E106K 0.14 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-A45Z-01 6 26197426 26197426 C T HIST1H3D Missense_Mutation p.R18H 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-CV-A45Z-01 6 26273543 26273543 G A HIST1H2BI Missense_Mutation p.E114K 0.10 tolerated_low_confidence(0.07) benign(0.041) TCGA-CV-A45Z-01 6 26373200 26373200 C - BTN3A2 Frame_Shift_Del p.G265Efs*13 0.09 TCGA-CV-A45Z-01 6 29640904 29640904 C A ZFP57 Missense_Mutation p.R328S 0.14 tolerated(0.11) benign(0.402) TCGA-CV-A45Z-01 6 30121897 30121897 C T TRIM10 Missense_Mutation p.R432K 0.10 tolerated(0.5) possibly_damaging(0.492) TCGA-CV-A45Z-01 6 31595641 31595641 G A PRRC2A Missense_Mutation p.V464M 0.13 unknown(0) TCGA-CV-A45Z-01 6 31601198 31601198 C T PRRC2A Silent p.P1454P 0.11 TCGA-CV-A45Z-01 6 33138938 33138938 G T COL11A2 Missense_Mutation p.P1021T 0.33 possibly_damaging(0.803) TCGA-CV-A45Z-01 6 36981415 36981415 C A FGD2 Silent p.I186I 0.13 TCGA-CV-A45Z-01 6 38980088 38980088 G A DNAH8 Missense_Mutation p.R4273H 0.08 probably_damaging(0.997) TCGA-CV-A45Z-01 6 39835559 39835559 G T DAAM2 Missense_Mutation p.K234N 0.17 deleterious(0) benign(0.444) TCGA-CV-A45Z-01 6 39869653 39869653 C A DAAM2 Nonsense_Mutation p.S1016* 0.17 TCGA-CV-A45Z-01 6 46657289 46657290 - C TDRD6 Frame_Shift_Ins p.A477Sfs*21 0.14 TCGA-CV-A45Z-01 6 49986794 49986794 C G DEFB110 Missense_Mutation p.E34Q 0.07 tolerated(0.18) benign(0.011) TCGA-CV-A45Z-01 6 51900390 51900390 C A PKHD1 Missense_Mutation p.R1076M 0.06 tolerated(0.11) benign(0.363) TCGA-CV-A45Z-01 6 51949723 51949723 G T PKHD1 Silent p.A3A 0.12 TCGA-CV-A45Z-01 6 52995701 52995701 G A GCM1 Missense_Mutation p.P157L 0.12 deleterious(0) probably_damaging(0.979) TCGA-CV-A45Z-01 6 55216298 55216298 C A GFRAL Missense_Mutation p.H206Q 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 6 56006615 56006615 A C COL21A1 Missense_Mutation p.Y504D 0.13 tolerated(0.17) possibly_damaging(0.861) TCGA-CV-A45Z-01 6 66045008 66045008 T G EYS Missense_Mutation p.E544A 0.07 tolerated(0.55) benign(0.005) TCGA-CV-A45Z-01 6 70049224 70049224 G T BAI3 Splice_Site p.X1096_splice 0.09 TCGA-CV-A45Z-01 6 7574966 7574966 A C DSP Missense_Mutation p.T792P 0.10 benign(0.012) TCGA-CV-A45Z-01 6 76751720 76751720 G A IMPG1 Missense_Mutation p.A64V 0.10 deleterious(0.04) possibly_damaging(0.521) TCGA-CV-A45Z-01 6 7884682 7884682 T C TXNDC5 Silent p.E362E 0.18 TCGA-CV-A45Z-01 6 86282058 86282058 T C SNX14 Missense_Mutation p.H99R 0.15 tolerated(0.75) benign(0) TCGA-CV-A45Z-01 6 90660226 90660226 G T BACH2 Missense_Mutation p.S533R 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 6 93979302 93979302 G C EPHA7 Missense_Mutation p.T509R 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A45Z-01 6 94066539 94066539 G T EPHA7 Missense_Mutation p.A407D 0.19 deleterious(0) possibly_damaging(0.846) TCGA-CV-A45Z-01 6 96652124 96652124 C T FUT9 3'UTR 0.13 TCGA-CV-A45Z-01 7 100358065 100358065 C T ZAN Silent p.L1250L 0.16 TCGA-CV-A45Z-01 7 104717782 104717782 A G KMT2E Silent p.K344K 0.11 TCGA-CV-A45Z-01 7 104783612 104783612 C A SRPK2 Missense_Mutation p.D327Y 0.07 deleterious(0.01) probably_damaging(0.912) TCGA-CV-A45Z-01 7 104783613 104783613 C A SRPK2 Missense_Mutation p.Q326H 0.07 tolerated(0.09) benign(0.004) TCGA-CV-A45Z-01 7 11521582 11521582 C G THSD7A Missense_Mutation p.R617T 0.12 tolerated(0.52) possibly_damaging(0.771) TCGA-CV-A45Z-01 7 116165002 116165002 C - CAV1 5'UTR 0.17 TCGA-CV-A45Z-01 7 117359589 117359589 C A CTTNBP2 Missense_Mutation p.C1538F 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 7 124404159 124404159 T C GPR37 Missense_Mutation p.Y291C 0.14 tolerated(0.22) probably_damaging(0.99) TCGA-CV-A45Z-01 7 134254248 134254248 C A AKR1B15 Missense_Mutation p.D134E 0.09 deleterious(0) probably_damaging(0.982) TCGA-CV-A45Z-01 7 134256362 134256362 G C AKR1B15 Missense_Mutation p.D148H 0.07 deleterious(0.01) benign(0.233) TCGA-CV-A45Z-01 7 139288949 139288949 G T HIPK2 Silent p.T711T 0.08 TCGA-CV-A45Z-01 7 141955030 141955030 G T PRSS58 Nonsense_Mutation p.S94* 0.11 TCGA-CV-A45Z-01 7 142001091 142001091 A T TRBV2 Missense_Mutation p.K28N 0.26 TCGA-CV-A45Z-01 7 142143669 142143669 G C TRBV6-7 Missense_Mutation p.F109L 0.19 tolerated(0.79) benign(0.073) TCGA-CV-A45Z-01 7 142481279 142481279 T C PRSS3P2 RNA 0.13 TCGA-CV-A45Z-01 7 142637649 142637649 A C C7orf34 Missense_Mutation p.Q140P 0.11 tolerated_low_confidence(0.24) benign(0.005) TCGA-CV-A45Z-01 7 142638490 142638490 C T KEL Missense_Mutation p.R683K 0.07 tolerated(0.94) benign(0.015) TCGA-CV-A45Z-01 7 142723572 142723572 G A OR9A2 Silent p.Y216Y 0.08 TCGA-CV-A45Z-01 7 142724147 142724147 T C OR9A2 Missense_Mutation p.I25V 0.13 tolerated(0.39) benign(0.002) TCGA-CV-A45Z-01 7 143632476 143632476 C A OR2F2 Missense_Mutation p.L51M 0.04 tolerated(0.07) possibly_damaging(0.77) TCGA-CV-A45Z-01 7 14378140 14378140 C G DGKB Missense_Mutation p.D709H 0.11 deleterious(0) probably_damaging(0.958) TCGA-CV-A45Z-01 7 143827100 143827100 G T OR2A14 Missense_Mutation p.A299S 0.06 deleterious(0.03) possibly_damaging(0.545) TCGA-CV-A45Z-01 7 150648112 150648112 C G KCNH2 Missense_Mutation p.R681P 0.10 deleterious(0) probably_damaging(0.979) TCGA-CV-A45Z-01 7 150747283 150747283 G A ASIC3 Missense_Mutation p.G209R 0.09 deleterious(0) probably_damaging(0.998) TCGA-CV-A45Z-01 7 154875955 154875955 C T HTR5A Nonsense_Mutation p.Q278* 0.08 TCGA-CV-A45Z-01 7 17382785 17382785 C T AHR 3'UTR 0.15 TCGA-CV-A45Z-01 7 21737692 21737692 G T DNAH11 Splice_Site p.X2021_splice 0.31 TCGA-CV-A45Z-01 7 2302892 2302892 C A SNX8 Silent p.A296A 0.13 TCGA-CV-A45Z-01 7 29440186 29440186 G A CHN2 Silent p.R106R 0.09 TCGA-CV-A45Z-01 7 31378147 31378147 T A NEUROD6 Missense_Mutation p.S246C 0.09 deleterious(0.01) probably_damaging(0.963) TCGA-CV-A45Z-01 7 34192759 34192759 G C BMPER Missense_Mutation p.K644N 0.10 deleterious(0.01) probably_damaging(0.964) TCGA-CV-A45Z-01 7 38471787 38471787 A G AMPH Splice_Site p.X386_splice 0.17 TCGA-CV-A45Z-01 7 42088212 42088212 G A GLI3 Missense_Mutation p.S186F 0.06 deleterious(0.02) possibly_damaging(0.748) TCGA-CV-A45Z-01 7 44102488 44102488 C T PGAM2 Missense_Mutation p.G213R 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 7 45014784 45014784 C G MYO1G Missense_Mutation p.A203P 0.10 tolerated(0.09) possibly_damaging(0.802) TCGA-CV-A45Z-01 7 55224574 55224574 G C EGFR Intron 0.11 TCGA-CV-A45Z-01 7 57522217 57522217 C A ZNF716 Missense_Mutation p.Q31K 0.15 tolerated(0.16) probably_damaging(0.979) TCGA-CV-A45Z-01 7 6776818 6776818 G A PMS2CL RNA 0.12 TCGA-CV-A45Z-01 7 73933913 73933913 G T GTF2IRD1 Silent p.T292T 0.10 TCGA-CV-A45Z-01 7 82544059 82544059 C A PCLO Missense_Mutation p.D4415Y 0.12 unknown(0) TCGA-CV-A45Z-01 7 82579755 82579755 C G PCLO Missense_Mutation p.Q3383H 0.14 unknown(0) TCGA-CV-A45Z-01 7 82584739 82584739 G T PCLO Missense_Mutation p.Q1844K 0.14 unknown(0) TCGA-CV-A45Z-01 7 82764161 82764161 G A PCLO Missense_Mutation p.S902L 0.13 unknown(0) TCGA-CV-A45Z-01 7 82764452 82764452 C A PCLO Missense_Mutation p.S805I 0.05 unknown(0) TCGA-CV-A45Z-01 7 83029528 83029528 G T SEMA3E Silent p.T394T 0.13 TCGA-CV-A45Z-01 7 86415996 86415996 C A GRM3 Silent p.T296T 0.19 TCGA-CV-A45Z-01 7 88963654 88963654 C A ZNF804B Missense_Mutation p.T453N 0.10 deleterious(0) probably_damaging(0.911) TCGA-CV-A45Z-01 7 90895604 90895604 G T FZD1 Missense_Mutation p.G470V 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 7 92151424 92151424 C A PEX1 Missense_Mutation p.G89W 0.14 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 7 95025660 95025660 C A PON3 Translation_Start_Site p.M1? 0.12 deleterious(0) unknown(0) TCGA-CV-A45Z-01 7 95025661 95025661 A T PON3 Translation_Start_Site p.M1? 0.12 deleterious(0) unknown(0) TCGA-CV-A45Z-01 7 99002543 99002543 T A PDAP1 Missense_Mutation p.Q16L 0.16 deleterious(0.03) benign(0.403) TCGA-CV-A45Z-01 7 99270239 99270239 T G CYP3A5 Silent p.L94L 0.09 TCGA-CV-A45Z-01 7 99473722 99473722 C A OR2AE1 Missense_Mutation p.C312F 0.10 tolerated(0.56) benign(0.002) TCGA-CV-A45Z-01 7 99773204 99773204 G T GPC2 Silent p.L213L 0.20 TCGA-CV-A45Z-01 8 100205207 100205207 C A VPS13B Missense_Mutation p.Q813K 0.15 deleterious(0.03) benign(0) TCGA-CV-A45Z-01 8 109215287 109215287 G T EIF3E Silent p.T408T 0.10 TCGA-CV-A45Z-01 8 110980738 110980738 G C KCNV1 Nonsense_Mutation p.S361* 0.10 TCGA-CV-A45Z-01 8 113293531 113293531 C T CSMD3 Missense_Mutation p.R3127Q 0.16 tolerated(0.29) benign(0.041) TCGA-CV-A45Z-01 8 113694668 113694668 T C CSMD3 Intron 0.08 TCGA-CV-A45Z-01 8 120831748 120831748 T G TAF2 Splice_Site p.X47_splice 0.10 TCGA-CV-A45Z-01 8 12870299 12870299 C A KIAA1456 Silent p.A87A 0.39 TCGA-CV-A45Z-01 8 133584730 133584730 T A LRRC6 Splice_Site p.X409_splice 0.21 TCGA-CV-A45Z-01 8 133673704 133673704 A T LRRC6 Splice_Site p.X60_splice 0.17 TCGA-CV-A45Z-01 8 133673835 133673835 C G LRRC6 Missense_Mutation p.D17H 0.18 deleterious(0.01) possibly_damaging(0.818) TCGA-CV-A45Z-01 8 133759256 133759256 G C TMEM71 Missense_Mutation p.S121C 0.14 deleterious(0) probably_damaging(0.986) TCGA-CV-A45Z-01 8 139151264 139151264 C A FAM135B Missense_Mutation p.R1289L 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-A45Z-01 8 139153565 139153565 G T FAM135B Silent p.I1222I 0.07 TCGA-CV-A45Z-01 8 143957153 143957153 G C CYP11B1 Missense_Mutation p.R366G 0.09 deleterious(0) probably_damaging(0.983) TCGA-CV-A45Z-01 8 144942066 144942066 C A EPPK1 Missense_Mutation p.V1786L 0.29 benign(0.005) TCGA-CV-A45Z-01 8 144994063 144994063 C A PLEC Missense_Mutation p.R3446L 0.13 probably_damaging(0.998) TCGA-CV-A45Z-01 8 145736803 145736803 A G RECQL4 3'UTR 0.13 TCGA-CV-A45Z-01 8 145742149 145742149 C G RECQL4 Splice_Site p.X119_splice 0.27 TCGA-CV-A45Z-01 8 16850462 16850462 C A FGF20 3'UTR 0.12 TCGA-CV-A45Z-01 8 17579397 17579397 C A MTUS1 Intron 0.35 TCGA-CV-A45Z-01 8 17612165 17612165 C G MTUS1 Missense_Mutation p.K384N 0.18 tolerated(0.32) benign(0.008) TCGA-CV-A45Z-01 8 24776212 24776212 G T NEFM 3'UTR 0.38 TCGA-CV-A45Z-01 8 27463875 27463875 C A CLU Missense_Mutation p.R138L 0.25 deleterious(0) possibly_damaging(0.479) TCGA-CV-A45Z-01 8 2855597 2855597 C A CSMD1 Missense_Mutation p.Q2771H 0.19 possibly_damaging(0.891) TCGA-CV-A45Z-01 8 37696482 37696482 C A GPR124 Missense_Mutation p.S756R 0.12 tolerated(0.14) benign(0.06) TCGA-CV-A45Z-01 8 40532265 40532265 A G ZMAT4 Silent p.L179L 0.07 TCGA-CV-A45Z-01 8 40532359 40532359 A G ZMAT4 Silent p.C147C 0.15 TCGA-CV-A45Z-01 8 48689409 48689409 T A PRKDC Missense_Mutation p.T4059S 0.15 possibly_damaging(0.73) TCGA-CV-A45Z-01 8 48706909 48706909 C T PRKDC Missense_Mutation p.E3537K 0.24 possibly_damaging(0.9) TCGA-CV-A45Z-01 8 52321180 52321180 T A PXDNL Missense_Mutation p.R1002W 0.23 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 8 53569364 53569364 C A RB1CC1 Missense_Mutation p.D1009Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-CV-A45Z-01 8 55533787 55533787 G A RP1 Silent p.R87R 0.11 TCGA-CV-A45Z-01 8 55539512 55539512 T A RP1 Missense_Mutation p.C1024S 0.11 tolerated(0.75) benign(0.013) TCGA-CV-A45Z-01 8 62430612 62430612 T C ASPH Silent p.T657T 0.06 TCGA-CV-A45Z-01 8 65509309 65509309 C A CYP7B1 Missense_Mutation p.D471Y 0.27 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 8 68213491 68213491 G T ARFGEF1 Missense_Mutation p.R94S 0.15 tolerated(0.08) possibly_damaging(0.597) TCGA-CV-A45Z-01 8 69046472 69046472 T G PREX2 Silent p.G1315G 0.13 TCGA-CV-A45Z-01 8 70539467 70539467 T A SULF1 Missense_Mutation p.S625T 0.13 tolerated(1) benign(0.001) TCGA-CV-A45Z-01 8 72964993 72964993 G C TRPA1 Missense_Mutation p.A551G 0.10 deleterious(0.03) benign(0.198) TCGA-CV-A45Z-01 8 74526175 74526175 C A STAU2 Missense_Mutation p.G232V 0.15 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 8 77763359 77763359 A T ZFHX4 Missense_Mutation p.H1401L 0.17 benign(0.402) TCGA-CV-A45Z-01 8 86386567 86386567 C T CA2 Silent p.H122H 0.14 TCGA-CV-A45Z-01 8 88366014 88366014 G T CNBD1 Missense_Mutation p.V435L 0.10 tolerated_low_confidence(0.21) benign(0.014) TCGA-CV-A45Z-01 8 95164106 95164106 G T CDH17 Missense_Mutation p.L596M 0.27 tolerated(0.15) possibly_damaging(0.897) TCGA-CV-A45Z-01 8 97172817 97172817 G A GDF6 Missense_Mutation p.A35V 0.07 tolerated(0.08) benign(0.033) TCGA-CV-A45Z-01 8 97318726 97318726 C G PTDSS1 Missense_Mutation p.H317D 0.12 deleterious(0) possibly_damaging(0.762) TCGA-CV-A45Z-01 9 103204404 103204404 G C MSANTD3 Missense_Mutation p.V62L 0.23 tolerated(0.23) probably_damaging(0.942) TCGA-CV-A45Z-01 9 113170823 113170823 G A SVEP1 Missense_Mutation p.H2353Y 0.20 benign(0.004) TCGA-CV-A45Z-01 9 116029554 116029554 G A CDC26 Missense_Mutation p.L83F 0.10 tolerated(1) benign(0) TCGA-CV-A45Z-01 9 116356334 116356334 G C RGS3 Intron 0.15 TCGA-CV-A45Z-01 9 125551232 125551232 C A OR5C1 Silent p.T7T 0.09 TCGA-CV-A45Z-01 9 127316734 127316734 C - NR6A1 Frame_Shift_Del p.S87Afs*39 0.32 TCGA-CV-A45Z-01 9 127684031 127684031 C A GOLGA1 Missense_Mutation p.Q234H 0.09 deleterious(0.04) possibly_damaging(0.897) TCGA-CV-A45Z-01 9 129595836 129595838 AAT - ZBTB43 In_Frame_Del p.N350del 0.15 TCGA-CV-A45Z-01 9 130413919 130413919 G T STXBP1 Missense_Mutation p.K25N 0.17 tolerated(0.22) probably_damaging(0.996) TCGA-CV-A45Z-01 9 137702117 137702117 C A COL5A1 Missense_Mutation p.P1164Q 0.14 unknown(0) TCGA-CV-A45Z-01 9 139264312 139264312 C A CARD9 Nonsense_Mutation p.E323* 0.14 TCGA-CV-A45Z-01 9 139264313 139264313 C A CARD9 Missense_Mutation p.K322N 0.14 deleterious(0.03) benign(0.209) TCGA-CV-A45Z-01 9 14805060 14805060 G T FREM1 Missense_Mutation p.T1122K 0.42 tolerated(0.22) benign(0.012) TCGA-CV-A45Z-01 9 14857642 14857642 C A FREM1 Missense_Mutation p.R246L 0.17 deleterious(0) possibly_damaging(0.852) TCGA-CV-A45Z-01 9 15468795 15468795 A T PSIP1 Missense_Mutation p.M418K 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-CV-A45Z-01 9 15695295 15695295 G C CCDC171 Silent p.S426S 0.31 TCGA-CV-A45Z-01 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.37 TCGA-CV-A45Z-01 9 21974724 21974724 C A CDKN2A Missense_Mutation p.G35W 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 9 32635060 32635060 G A TAF1L Missense_Mutation p.A173V 0.27 tolerated_low_confidence(0.16) benign(0.06) TCGA-CV-A45Z-01 9 37740133 37740133 C A FRMPD1 Silent p.L536L 0.08 TCGA-CV-A45Z-01 9 67951993 67951993 G T ANKRD20A1 Missense_Mutation p.R319I 0.27 tolerated(0.08) benign(0.014) TCGA-CV-A45Z-01 9 71395894 71395894 G T FAM122A Missense_Mutation p.A272S 0.21 tolerated(1) benign(0.013) TCGA-CV-A45Z-01 9 72758537 72758537 C A MAMDC2 Silent p.P402P 0.29 TCGA-CV-A45Z-01 9 8633371 8633371 C A PTPRD Missense_Mutation p.A100S 0.08 deleterious(0.01) probably_damaging(0.973) TCGA-CV-A45Z-01 9 90535173 90535173 G C SPATA31C1 RNA 0.24 TCGA-CV-A45Z-01 9 90535510 90535510 C A SPATA31C1 RNA 0.30 TCGA-CV-A45Z-01 9 91617277 91617277 G C S1PR3 3'UTR 0.31 TCGA-CV-A45Z-01 X 104464339 104464339 G C TEX13A Missense_Mutation p.A180G 0.28 tolerated(0.26) benign(0.026) TCGA-CV-A45Z-01 X 104984617 104984617 G A IL1RAPL2 Silent p.A327A 0.27 TCGA-CV-A45Z-01 X 105011206 105011206 G T IL1RAPL2 Missense_Mutation p.G538V 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A45Z-01 X 105905477 105905477 A - CXorf57 Frame_Shift_Del p.K738Nfs*16 0.19 TCGA-CV-A45Z-01 X 113965752 113965752 C A HTR2C Missense_Mutation p.P29T 0.20 tolerated_low_confidence(0.27) benign(0.004) TCGA-CV-A45Z-01 X 114877687 114877687 A G PLS3 Silent p.R350R 0.14 TCGA-CV-A45Z-01 X 122387312 122387312 C A GRIA3 Missense_Mutation p.P143T 0.23 deleterious(0) probably_damaging(0.977) TCGA-CV-A45Z-01 X 125299102 125299102 G T DCAF12L2 Missense_Mutation p.A269D 0.13 deleterious(0) probably_damaging(0.996) TCGA-CV-A45Z-01 X 136649480 136649480 C G ZIC3 Nonsense_Mutation p.Y210* 0.17 TCGA-CV-A45Z-01 X 13757119 13757119 A T OFD1 Splice_Site p.X128_splice 0.29 TCGA-CV-A45Z-01 X 138667263 138667263 T C MCF2 Missense_Mutation p.T979A 0.17 tolerated(0.35) benign(0.001) TCGA-CV-A45Z-01 X 139865977 139865977 C A CDR1 Missense_Mutation p.W185C 0.22 deleterious(0.02) benign(0.064) TCGA-CV-A45Z-01 X 142716991 142716991 C A SLITRK4 Missense_Mutation p.R645L 0.13 deleterious(0) probably_damaging(0.987) TCGA-CV-A45Z-01 X 144906317 144906317 C A SLITRK2 Missense_Mutation p.R792S 0.22 tolerated(0.08) benign(0.326) TCGA-CV-A45Z-01 X 1467386 1467386 C A IL3RA Silent p.T82T 0.09 TCGA-CV-A45Z-01 X 1484092 1484092 C G IL3RA Missense_Mutation p.A274G 0.12 tolerated(0.18) benign(0.045) TCGA-CV-A45Z-01 X 150869492 150869492 G T PRRG3 Missense_Mutation p.G228V 0.14 tolerated_low_confidence(0.09) benign(0.03) TCGA-CV-A45Z-01 X 21627270 21627270 G T CNKSR2 Nonsense_Mutation p.E743* 0.13 TCGA-CV-A45Z-01 X 30577868 30577868 T C CXorf21 Missense_Mutation p.Q202R 0.31 tolerated(0.17) probably_damaging(0.966) TCGA-CV-A45Z-01 X 36103428 36103428 T A CHDC2 Intron 0.32 TCGA-CV-A45Z-01 X 36103429 36103429 A T CHDC2 Splice_Site p.X139_splice 0.32 TCGA-CV-A45Z-01 X 37026587 37026587 A C FAM47C Missense_Mutation p.H35P 0.24 deleterious(0.01) possibly_damaging(0.843) TCGA-CV-A45Z-01 X 48674002 48674002 G T HDAC6 Missense_Mutation p.C426F 0.20 tolerated(0.05) benign(0.189) TCGA-CV-A45Z-01 X 50213565 50213565 G A DGKK RNA 0.37 TCGA-CV-A45Z-01 X 57358175 57358175 G A FAAH2 Missense_Mutation p.S186N 0.20 tolerated(0.35) benign(0.014) TCGA-CV-A45Z-01 X 6069127 6069127 C - NLGN4X Frame_Shift_Del p.W127Cfs*9 0.17 TCGA-CV-A45Z-01 X 69282814 69282814 C T OTUD6A Missense_Mutation p.P147L 0.42 deleterious(0.03) possibly_damaging(0.899) TCGA-CV-A45Z-01 X 70148007 70148007 T C SLC7A3 Missense_Mutation p.I270V 0.38 deleterious(0.03) possibly_damaging(0.536) TCGA-CV-A45Z-01 X 70823983 70823983 G A ACRC Missense_Mutation p.D286N 0.30 unknown(0) TCGA-CV-A45Z-01 X 72667520 72667520 C T CDX4 Missense_Mutation p.A144V 0.25 tolerated(0.32) benign(0.003) TCGA-CV-A45Z-01 X 74273147 74273147 C A ABCB7 3'UTR 0.19 TCGA-CV-A45Z-01 X 90691045 90691045 G T PABPC5 Missense_Mutation p.A157S 0.14 tolerated(0.18) possibly_damaging(0.873) TCGA-CV-A45Z-01 X 91090551 91090551 C A PCDH11X Nonsense_Mutation p.C16* 0.19 TCGA-CV-A45Z-01 X 91133479 91133479 A C PCDH11X Missense_Mutation p.H747P 0.23 deleterious(0) probably_damaging(0.99) TCGA-CV-A460-01 10 102746995 102746995 G A MRPL43 Intron 0.29 TCGA-CV-A460-01 10 135123764 135123764 C T ZNF511 Missense_Mutation p.R176W 0.22 deleterious(0) probably_damaging(0.975) TCGA-CV-A460-01 10 73822656 73822656 G A SPOCK2 Silent p.I379I 0.30 TCGA-CV-A460-01 11 113211391 113211391 G C TTC12 Missense_Mutation p.E278Q 0.21 tolerated(0.08) possibly_damaging(0.709) TCGA-CV-A460-01 11 125769445 125769445 G A HYLS1 Missense_Mutation p.R61Q 0.34 tolerated(0.41) benign(0.01) TCGA-CV-A460-01 11 43852466 43852466 A C HSD17B12 Intron 0.18 TCGA-CV-A460-01 11 73753183 73753183 A C C2CD3 Missense_Mutation p.L1859R 0.10 tolerated(0.06) possibly_damaging(0.883) TCGA-CV-A460-01 11 89059809 89059809 A G NOX4 3'UTR 0.50 TCGA-CV-A460-01 11 94862701 94862701 G T ENDOD1 Silent p.R487R 0.17 TCGA-CV-A460-01 11 96125155 96125155 G A JRKL Missense_Mutation p.E448K 0.31 deleterious(0.03) possibly_damaging(0.838) TCGA-CV-A460-01 12 120222864 120222864 A G CIT Missense_Mutation p.V434A 0.13 tolerated(1) benign(0.001) TCGA-CV-A460-01 12 70003993 70003993 G A LRRC10 Missense_Mutation p.A209V 0.18 tolerated(0.33) benign(0.003) TCGA-CV-A460-01 13 109707832 109707838 TTGATAA - MYO16 Frame_Shift_Del p.D1054Ffs*16 0.18 TCGA-CV-A460-01 13 28014281 28014281 C T MTIF3 Missense_Mutation p.R102Q 0.16 deleterious(0.02) possibly_damaging(0.894) TCGA-CV-A460-01 14 20215606 20215606 C T OR4Q3 Missense_Mutation p.S7F 0.09 deleterious(0) possibly_damaging(0.694) TCGA-CV-A460-01 14 23450598 23450599 - A AJUBA Frame_Shift_Ins p.R293Lfs*13 0.22 TCGA-CV-A460-01 15 33765661 33765661 G A RYR3 Silent p.K31K 0.29 TCGA-CV-A460-01 15 53905881 53905881 A C WDR72 Missense_Mutation p.Y952D 0.27 tolerated(0.08) benign(0.342) TCGA-CV-A460-01 15 54542428 54542428 G T UNC13C Missense_Mutation p.M1078I 0.19 tolerated_low_confidence(0.58) benign(0) TCGA-CV-A460-01 15 86189094 86189094 C G AKAP13 Nonsense_Mutation p.S1428* 0.30 TCGA-CV-A460-01 16 26147192 26147192 C T HS3ST4 Nonsense_Mutation p.R332* 0.22 TCGA-CV-A460-01 16 31087973 31087973 C T ZNF646 Missense_Mutation p.P110S 0.20 tolerated(0.36) benign(0.002) TCGA-CV-A460-01 16 31473893 31473893 C T ARMC5 Missense_Mutation p.P342L 0.24 deleterious(0.04) benign(0.008) TCGA-CV-A460-01 16 711667 711667 C A WDR90 Silent p.L1248L 0.14 TCGA-CV-A460-01 16 84211451 84211451 T C DNAAF1 3'UTR 0.33 TCGA-CV-A460-01 17 11696832 11696832 T G DNAH9 Missense_Mutation p.S2692A 0.29 benign(0.032) TCGA-CV-A460-01 17 26955288 26955288 G T KIAA0100 Nonsense_Mutation p.S1530* 0.10 TCGA-CV-A460-01 17 40714726 40714726 C A COASY Missense_Mutation p.A58E 0.15 deleterious(0) probably_damaging(0.999) TCGA-CV-A460-01 17 67309350 67309350 T C ABCA5 Missense_Mutation p.I64V 0.29 tolerated(0.37) benign(0.001) TCGA-CV-A460-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.39 tolerated(0.13) possibly_damaging(0.631) TCGA-CV-A460-01 17 79226015 79226015 G A SLC38A10 Missense_Mutation p.P642L 0.35 tolerated(0.39) benign(0.006) TCGA-CV-A460-01 18 29793353 29793353 G A MEP1B Silent p.V470V 0.25 TCGA-CV-A460-01 18 43329753 43329753 C G SLC14A1 Missense_Mutation p.P392R 0.18 deleterious(0) probably_damaging(0.997) TCGA-CV-A460-01 18 580457 580457 A G CETN1 Missense_Mutation p.R17G 0.28 deleterious(0.04) benign(0) TCGA-CV-A460-01 18 77659548 77659548 G A KCNG2 Missense_Mutation p.R378H 0.25 tolerated(0.07) possibly_damaging(0.471) TCGA-CV-A460-01 19 12089640 12089640 A G ZNF763 Missense_Mutation p.I304V 0.24 tolerated(0.7) benign(0.006) TCGA-CV-A460-01 19 12637897 12637897 C G ZNF564 Missense_Mutation p.C342S 0.21 deleterious(0.01) probably_damaging(1) TCGA-CV-A460-01 19 16631002 16631002 G A CHERP Missense_Mutation p.P807L 0.10 deleterious(0.02) unknown(0) TCGA-CV-A460-01 19 16870033 16870033 C A NWD1 Intron 0.17 TCGA-CV-A460-01 19 2767622 2767622 G A SGTA Missense_Mutation p.P55S 0.18 tolerated(1) benign(0.002) TCGA-CV-A460-01 19 43576014 43576014 G C PSG2 Missense_Mutation p.P268A 0.39 tolerated(0.05) benign(0.225) TCGA-CV-A460-01 19 7976464 7976464 G T MAP2K7 Splice_Site p.X360_splice 0.23 TCGA-CV-A460-01 1 100684182 100684182 A G DBT Silent p.N185N 0.17 TCGA-CV-A460-01 1 101190244 101190244 G A VCAM1 Silent p.V242V 0.27 TCGA-CV-A460-01 1 240656234 240656235 GC - GREM2 3'UTR 0.35 TCGA-CV-A460-01 1 241797567 241797567 C T CHML Missense_Mutation p.C501Y 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A460-01 1 36291346 36291346 C A AGO4 Silent p.G185G 0.06 TCGA-CV-A460-01 1 54665941 54665950 AGGCGGGCGC - MRPL37 Frame_Shift_Del p.R9* 0.19 TCGA-CV-A460-01 20 19679321 19679321 C A SLC24A3 Silent p.S572S 0.25 TCGA-CV-A460-01 20 34596245 34596245 G A CNBD2 Missense_Mutation p.E333K 0.25 deleterious(0.05) benign(0.033) TCGA-CV-A460-01 20 39788302 39788302 C G PLCG1 Missense_Mutation p.R92G 0.21 deleterious(0) possibly_damaging(0.605) TCGA-CV-A460-01 20 43353459 43353459 C T WISP2 Missense_Mutation p.R120C 0.41 deleterious(0.02) benign(0.022) TCGA-CV-A460-01 21 41711255 41711255 G T DSCAM Missense_Mutation p.T433K 0.29 tolerated(0.3) possibly_damaging(0.777) TCGA-CV-A460-01 22 19951227 19951227 C T COMT Missense_Mutation p.P143L 0.16 deleterious(0) probably_damaging(0.909) TCGA-CV-A460-01 22 20041042 20041042 C T TANGO2 Silent p.Y116Y 0.14 TCGA-CV-A460-01 22 42539549 42539549 G A NDUFA6-AS1 3'Flank 0.21 TCGA-CV-A460-01 2 158962650 158962650 G A UPP2 Silent p.L91L 0.24 TCGA-CV-A460-01 2 209293016 209293016 C A PTH2R Missense_Mutation p.L56I 0.26 tolerated(0.13) benign(0.007) TCGA-CV-A460-01 2 216248067 216248067 A C FN1 Silent p.T1678T 0.22 TCGA-CV-A460-01 2 233651883 233651883 G T GIGYF2 Nonsense_Mutation p.G208* 0.19 TCGA-CV-A460-01 3 14798938 14798938 G A C3orf20 Silent p.P667P 0.28 TCGA-CV-A460-01 3 178952065 178952065 G A PIK3CA Missense_Mutation p.M1040I 0.24 tolerated(0.14) benign(0.021) TCGA-CV-A460-01 3 187416485 187416485 T C RTP2 Missense_Mutation p.E160G 0.42 tolerated(0.09) benign(0.297) TCGA-CV-A460-01 3 197687111 197687111 C T LMLN Missense_Mutation p.P7S 0.29 tolerated_low_confidence(0.07) benign(0.003) TCGA-CV-A460-01 3 36524575 36524575 G A STAC Missense_Mutation p.M160I 0.24 tolerated(0.43) benign(0.11) TCGA-CV-A460-01 4 46994885 46994885 C A GABRA4 Missense_Mutation p.L55F 0.11 deleterious(0.02) probably_damaging(1) TCGA-CV-A460-01 4 52860601 52860601 G T LRRC66 Missense_Mutation p.P863T 0.23 deleterious(0.01) possibly_damaging(0.892) TCGA-CV-A460-01 5 140720248 140720248 C T PCDHGA2 Silent p.D570D 0.43 TCGA-CV-A460-01 5 36986127 36986127 A G NIPBL Missense_Mutation p.R949G 0.29 deleterious_low_confidence(0.03) benign(0.021) TCGA-CV-A460-01 5 45262440 45262440 G C HCN1 Silent p.S752S 0.24 TCGA-CV-A460-01 6 108985985 108985985 A G FOXO3 Missense_Mutation p.N650S 0.21 tolerated(0.08) benign(0.275) TCGA-CV-A460-01 6 152651161 152651161 T C SYNE1 Missense_Mutation p.I4887V 0.20 benign(0.085) TCGA-CV-A460-01 6 165756893 165756893 T C PDE10A Missense_Mutation p.E695G 0.19 deleterious(0) probably_damaging(0.998) TCGA-CV-A460-01 6 4032971 4032971 G C PRPF4B Missense_Mutation p.R407T 0.19 tolerated(0.36) possibly_damaging(0.541) TCGA-CV-A460-01 7 154585912 154585912 G C DPP6 Missense_Mutation p.K420N 0.22 deleterious(0.01) possibly_damaging(0.882) TCGA-CV-A460-01 7 82585749 82585749 C A PCLO Missense_Mutation p.R1507I 0.21 unknown(0) TCGA-CV-A460-01 7 87138751 87138751 C T ABCB1 Missense_Mutation p.R1110Q 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A460-01 7 99971206 99971206 G T PILRA 5'UTR 0.16 TCGA-CV-A460-01 8 104337639 104337639 C G FZD6 Nonsense_Mutation p.Y435* 0.20 TCGA-CV-A460-01 8 113277717 113277717 G A CSMD3 Missense_Mutation p.T3204M 0.24 tolerated(0.5) benign(0.028) TCGA-CV-A460-01 8 12957134 12957134 G A DLC1 Silent p.P904P 0.13 TCGA-CV-A460-01 8 72975038 72975038 A C TRPA1 Missense_Mutation p.V268G 0.32 tolerated(0.25) benign(0.079) TCGA-CV-A460-01 9 101017691 101017691 G A TBC1D2 Missense_Mutation p.P45S 0.06 tolerated(0.22) benign(0.02) TCGA-CV-A460-01 9 26910396 26910396 T C PLAA Missense_Mutation p.I533V 0.25 tolerated(0.35) benign(0.003) TCGA-CV-A460-01 9 97063546 97063546 C T ZNF169 Missense_Mutation p.P569L 0.19 deleterious(0.03) probably_damaging(0.939) TCGA-CV-A460-01 X 138711911 138711911 A T MCF2 Missense_Mutation p.D187E 0.48 tolerated(0.25) benign(0.033) TCGA-CV-A460-01 X 34149966 34149966 C A FAM47A Missense_Mutation p.D144Y 0.62 deleterious(0) probably_damaging(0.993) TCGA-CV-A461-01 10 101841328 101841328 C A CPN1 Missense_Mutation p.A19S 0.14 tolerated(0.16) possibly_damaging(0.459) TCGA-CV-A461-01 10 103542039 103542039 G C NPM3 Missense_Mutation p.R132G 0.27 deleterious(0.04) possibly_damaging(0.471) TCGA-CV-A461-01 10 103904779 103904779 G C PPRC1 Missense_Mutation p.G1204A 0.20 deleterious(0.01) benign(0.005) TCGA-CV-A461-01 10 106849541 106849541 C T SORCS3 Missense_Mutation p.A346V 0.26 tolerated(0.11) benign(0.01) TCGA-CV-A461-01 10 108459079 108459079 A T SORCS1 Missense_Mutation p.Y436N 0.24 deleterious(0) probably_damaging(0.92) TCGA-CV-A461-01 10 115489094 115489094 G A CASP7 Missense_Mutation p.G269E 0.24 tolerated(0.54) benign(0.005) TCGA-CV-A461-01 10 117607388 117607388 G T ATRNL1 Missense_Mutation p.G1302W 0.18 deleterious(0.01) possibly_damaging(0.842) TCGA-CV-A461-01 10 121207758 121207758 C A GRK5 Missense_Mutation p.P464T 0.17 deleterious(0) benign(0.003) TCGA-CV-A461-01 10 123970575 123970575 G T TACC2 Missense_Mutation p.G2212V 0.20 probably_damaging(0.979) TCGA-CV-A461-01 10 127526851 127526851 C G DHX32 Missense_Mutation p.E663Q 0.19 tolerated(0.07) probably_damaging(1) TCGA-CV-A461-01 10 128118392 128118392 C A C10orf90 Missense_Mutation p.C642F 0.21 tolerated(1) benign(0.003) TCGA-CV-A461-01 10 132891322 132891322 G A TCERG1L 3'UTR 0.15 TCGA-CV-A461-01 10 134896171 134896171 C G GPR123-AS1 3'Flank 0.18 TCGA-CV-A461-01 10 134941872 134941872 C G GPR123 Nonsense_Mutation p.Y180* 0.29 TCGA-CV-A461-01 10 15145809 15145809 G A RPP38 Missense_Mutation p.E166K 0.16 deleterious(0.01) possibly_damaging(0.755) TCGA-CV-A461-01 10 16941115 16941115 G T CUBN Silent p.P2826P 0.19 TCGA-CV-A461-01 10 24874495 24874495 C A ARHGAP21 Nonsense_Mutation p.E1575* 0.22 TCGA-CV-A461-01 10 29818743 29818743 C T SVIL Missense_Mutation p.V713I 0.24 tolerated(0.6) benign(0.014) TCGA-CV-A461-01 10 34620136 34620136 T G PARD3 Missense_Mutation p.R917S 0.23 deleterious(0) probably_damaging(0.993) TCGA-CV-A461-01 10 45473430 45473430 C A C10orf10 Nonsense_Mutation p.E17* 0.15 TCGA-CV-A461-01 10 55583103 55583103 G C PCDH15 Nonsense_Mutation p.Y1463* 0.23 TCGA-CV-A461-01 10 5951148 5951148 C T FBXO18 Missense_Mutation p.P355L 0.22 tolerated(0.24) possibly_damaging(0.483) TCGA-CV-A461-01 10 61014021 61014021 G T FAM13C Intron 0.21 TCGA-CV-A461-01 10 69648676 69648676 G T SIRT1 Missense_Mutation p.G195V 0.28 deleterious(0) probably_damaging(0.996) TCGA-CV-A461-01 10 70549469 70549469 G T CCAR1 Nonsense_Mutation p.E1064* 0.10 TCGA-CV-A461-01 10 73270912 73270912 T A CDH23-AS1 Intron 0.17 TCGA-CV-A461-01 10 75187509 75187509 C T MSS51 Missense_Mutation p.G80D 0.22 tolerated(0.27) benign(0.027) TCGA-CV-A461-01 10 79569399 79569399 C G DLG5 Missense_Mutation p.G1518A 0.16 deleterious(0.01) probably_damaging(1) TCGA-CV-A461-01 10 87362341 87362341 C T GRID1 Missense_Mutation p.G907S 0.12 tolerated_low_confidence(1) benign(0.009) TCGA-CV-A461-01 10 88705126 88705126 C A MMRN2 Splice_Site p.X134_splice 0.17 TCGA-CV-A461-01 10 90665297 90665297 G T STAMBPL1 Missense_Mutation p.S43I 0.20 deleterious(0) benign(0.128) TCGA-CV-A461-01 10 98741370 98741370 G A C10orf12 Missense_Mutation p.E75K 0.23 deleterious(0) probably_damaging(0.928) TCGA-CV-A461-01 11 102738654 102738654 T C MMP12 RNA 0.18 TCGA-CV-A461-01 11 104900411 104900411 G T CASP1 Silent p.I281I 0.19 TCGA-CV-A461-01 11 114121088 114121088 C A ZBTB16 Silent p.S611S 0.24 TCGA-CV-A461-01 11 114392878 114392878 C G NXPE1 Missense_Mutation p.E344Q 0.11 deleterious(0.01) benign(0.356) TCGA-CV-A461-01 11 117329501 117329501 G C DSCAML1 Missense_Mutation p.S1239R 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 11 117780580 117780580 G A TMPRSS13 Silent p.I350I 0.22 TCGA-CV-A461-01 11 119536008 119536008 C T PVRL1 Splice_Site p.X335_splice 0.22 TCGA-CV-A461-01 11 120980195 120980195 C A TECTA Missense_Mutation p.S158R 0.17 deleterious(0) probably_damaging(0.996) TCGA-CV-A461-01 11 121483539 121483539 A G SORL1 Missense_Mutation p.K1806R 0.19 tolerated(0.34) benign(0.001) TCGA-CV-A461-01 11 122930385 122930385 T C HSPA8 Missense_Mutation p.N306D 0.20 tolerated_low_confidence(0.59) probably_damaging(0.924) TCGA-CV-A461-01 11 123813975 123813975 C - OR6T1 Frame_Shift_Del p.D191Tfs*5 0.19 TCGA-CV-A461-01 11 123894530 123894530 G A OR10G9 Missense_Mutation p.V271M 0.17 deleterious(0.02) probably_damaging(0.983) TCGA-CV-A461-01 11 124253215 124253215 C T OR8B2 Missense_Mutation p.V9M 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.779) TCGA-CV-A461-01 11 124793733 124793733 C G HEPACAM Missense_Mutation p.V201L 0.17 tolerated(0.23) benign(0.05) TCGA-CV-A461-01 11 124950548 124950548 C T SLC37A2 Missense_Mutation p.S189F 0.15 deleterious(0) possibly_damaging(0.486) TCGA-CV-A461-01 11 126314917 126314917 G T KIRREL3 Silent p.P403P 0.16 TCGA-CV-A461-01 11 134023222 134023222 C G NCAPD3 Missense_Mutation p.S1430T 0.19 deleterious(0) probably_damaging(0.971) TCGA-CV-A461-01 11 18124868 18124868 G T SAAL1 Missense_Mutation p.S54Y 0.20 tolerated(0.06) possibly_damaging(0.617) TCGA-CV-A461-01 11 18158802 18158802 G A MRGPRX3 Missense_Mutation p.R18H 0.20 deleterious(0.04) benign(0.006) TCGA-CV-A461-01 11 21250883 21250883 G T NELL1 Missense_Mutation p.D478Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-CV-A461-01 11 21556012 21556012 G - NELL1 Frame_Shift_Del p.G580Vfs*23 0.21 TCGA-CV-A461-01 11 284296 284296 C A NLRP6 Silent p.P756P 0.20 TCGA-CV-A461-01 11 33049357 33049357 A G DEPDC7 Missense_Mutation p.Q197R 0.17 tolerated(0.36) benign(0.001) TCGA-CV-A461-01 11 40137179 40137179 C A LRRC4C Missense_Mutation p.D222Y 0.19 deleterious(0) possibly_damaging(0.82) TCGA-CV-A461-01 11 420988 420988 C A ANO9 Missense_Mutation p.G483C 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-CV-A461-01 11 46800095 46800095 T C CKAP5 Missense_Mutation p.S830G 0.26 tolerated(1) benign(0) TCGA-CV-A461-01 11 46890260 46890260 G A LRP4 Silent p.T1614T 0.32 TCGA-CV-A461-01 11 48149384 48149384 G A PTPRJ Silent p.L382L 0.25 TCGA-CV-A461-01 11 4870251 4870251 A T OR51S1 Missense_Mutation p.L63Q 0.19 deleterious(0) possibly_damaging(0.892) TCGA-CV-A461-01 11 5172787 5172787 G T OR52A1 Silent p.I271I 0.20 TCGA-CV-A461-01 11 55653184 55653184 G A TRIM51 Missense_Mutation p.G94R 0.20 deleterious(0.03) possibly_damaging(0.841) TCGA-CV-A461-01 11 5758304 5758304 C - OR56B1 Frame_Shift_Del p.L187Cfs*34 0.23 TCGA-CV-A461-01 11 5809661 5809661 C A OR52N1 Missense_Mutation p.C129F 0.16 deleterious(0) probably_damaging(0.977) TCGA-CV-A461-01 11 59807995 59807995 T C OOSP2 Silent p.H21H 0.25 TCGA-CV-A461-01 11 6007248 6007248 G T OR52L1 Missense_Mutation p.L305I 0.24 deleterious(0.01) possibly_damaging(0.64) TCGA-CV-A461-01 11 60296880 60296880 G T MS4A13 Missense_Mutation p.G117C 0.17 tolerated(0.18) possibly_damaging(0.489) TCGA-CV-A461-01 11 608969 608969 G T PHRF1 Missense_Mutation p.R1170S 0.41 deleterious(0.02) possibly_damaging(0.765) TCGA-CV-A461-01 11 61295584 61295584 C A SYT7 Missense_Mutation p.S217I 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 11 6129878 6129878 A G OR56B4 Silent p.A290A 0.25 TCGA-CV-A461-01 11 6261621 6261621 C A CNGA4 Missense_Mutation p.D199E 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 11 64067113 64067113 G C KCNK4 Missense_Mutation p.R366T 0.19 deleterious(0.02) unknown(0) TCGA-CV-A461-01 11 64109545 64109545 C A CCDC88B Missense_Mutation p.P252H 0.29 deleterious(0.03) probably_damaging(0.946) TCGA-CV-A461-01 11 65124370 65124370 G T TIGD3 Missense_Mutation p.G364V 0.17 deleterious(0) probably_damaging(0.995) TCGA-CV-A461-01 11 65619987 65619987 C G SNX32 Missense_Mutation p.L293V 0.18 deleterious(0) probably_damaging(0.968) TCGA-CV-A461-01 11 67787208 67787208 G A ALDH3B1 Missense_Mutation p.G168R 0.14 deleterious(0.01) possibly_damaging(0.876) TCGA-CV-A461-01 11 6867574 6867574 C A OR10A5 Missense_Mutation p.R221S 0.20 tolerated(0.06) benign(0.319) TCGA-CV-A461-01 11 70052514 70052514 A T FADD Missense_Mutation p.N188Y 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-CV-A461-01 11 71698079 71698079 A G RNF121 Missense_Mutation p.Y143C 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-CV-A461-01 11 73796924 73796924 C A C2CD3 Missense_Mutation p.A1217S 0.18 tolerated(0.2) probably_damaging(0.992) TCGA-CV-A461-01 11 76239436 76239436 A G C11orf30 Missense_Mutation p.Q707R 0.24 tolerated(0.31) benign(0.071) TCGA-CV-A461-01 11 76868401 76868401 G T MYO7A Missense_Mutation p.G271V 0.38 deleterious(0) possibly_damaging(0.888) TCGA-CV-A461-01 11 82951886 82951886 G A ANKRD42 Missense_Mutation p.V341M 0.25 tolerated(0.61) benign(0.001) TCGA-CV-A461-01 11 88924383 88924383 G C TYR Missense_Mutation p.R278P 0.20 tolerated(0.12) probably_damaging(0.951) TCGA-CV-A461-01 11 92086468 92086468 T C FAT3 Missense_Mutation p.I397T 0.14 benign(0.071) TCGA-CV-A461-01 11 92498056 92498056 G A FAT3 Silent p.V1332V 0.19 TCGA-CV-A461-01 11 94040346 94040346 C A FOLR4 Missense_Mutation p.Q115K 0.33 deleterious(0.02) benign(0.117) TCGA-CV-A461-01 11 95551054 95551054 A C CEP57 Missense_Mutation p.Q203P 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-A461-01 11 9803081 9803082 - T SBF2 Frame_Shift_Ins p.H1809Afs*4 0.18 TCGA-CV-A461-01 12 100811931 100811931 C A SLC17A8 Missense_Mutation p.H474Q 0.20 tolerated(0.16) benign(0.185) TCGA-CV-A461-01 12 10163235 10163235 G C CLEC12B 5'UTR 0.27 TCGA-CV-A461-01 12 10570964 10570964 A T KLRC3 Nonsense_Mutation p.C155* 0.21 TCGA-CV-A461-01 12 107109260 107109260 C A RFX4 Missense_Mutation p.T368N 0.12 tolerated(0.3) benign(0.26) TCGA-CV-A461-01 12 110426817 110426817 C T GIT2 Missense_Mutation p.R119H 0.15 deleterious(0.01) benign(0.258) TCGA-CV-A461-01 12 112451279 112451279 G A ERP29 Missense_Mutation p.A4T 0.17 tolerated_low_confidence(0.38) benign(0.016) TCGA-CV-A461-01 12 112578644 112578644 C T TRAFD1 Missense_Mutation p.L87F 0.23 tolerated(0.18) possibly_damaging(0.898) TCGA-CV-A461-01 12 113405829 113405829 A C OAS3 Missense_Mutation p.K985T 0.18 tolerated(0.4) benign(0.139) TCGA-CV-A461-01 12 119617080 119617080 C A HSPB8 5'UTR 0.19 TCGA-CV-A461-01 12 121098997 121098997 G - CABP1 Frame_Shift_Del p.D356Mfs*12 0.16 TCGA-CV-A461-01 12 123057507 123057507 A T KNTC1 Missense_Mutation p.E681D 0.15 deleterious(0.04) probably_damaging(0.956) TCGA-CV-A461-01 12 124377897 124377897 T G DNAH10 Missense_Mutation p.V2920G 0.24 possibly_damaging(0.883) TCGA-CV-A461-01 12 124418025 124418025 G C DNAH10 Missense_Mutation p.D4364H 0.11 benign(0.02) TCGA-CV-A461-01 12 126128737 126128737 G T TMEM132B Missense_Mutation p.W513L 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 12 126128738 126128738 G T TMEM132B Missense_Mutation p.W513C 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 12 132527956 132527956 G C EP400 Silent p.P2105P 0.12 TCGA-CV-A461-01 12 14778766 14778766 A T GUCY2C Missense_Mutation p.L778Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 12 20833091 20833091 G C PDE3A Silent p.L1104L 0.17 TCGA-CV-A461-01 12 25047240 25047240 G A BCAT1 Missense_Mutation p.P95L 0.23 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 12 26589271 26589271 C T ITPR2 Missense_Mutation p.A2218T 0.17 tolerated(0.24) benign(0.002) TCGA-CV-A461-01 12 40114611 40114611 T A C12orf40 Missense_Mutation p.I506K 0.15 deleterious(0.02) benign(0.308) TCGA-CV-A461-01 12 48174638 48174638 C T SLC48A1 3'UTR 0.29 TCGA-CV-A461-01 12 48736716 48736716 C T ZNF641 3'UTR 0.26 TCGA-CV-A461-01 12 49433233 49433233 G - KMT2D Frame_Shift_Del p.F2739Lfs*18 0.19 TCGA-CV-A461-01 12 51857496 51857496 G C SLC4A8 Silent p.G449G 0.13 TCGA-CV-A461-01 12 52986737 52986737 C A KRT72 Splice_Site p.X214_splice 0.29 TCGA-CV-A461-01 12 54403307 54403307 G T HOXC8 Missense_Mutation p.S80I 0.21 deleterious(0.03) benign(0.067) TCGA-CV-A461-01 12 54426862 54426862 C T HOXC5 5'UTR 0.21 TCGA-CV-A461-01 12 56492688 56492688 G A ERBB3 Silent p.K946K 0.32 TCGA-CV-A461-01 12 56495919 56495919 C G ERBB3 3'UTR 0.27 TCGA-CV-A461-01 12 56650821 56650821 C T ANKRD52 Missense_Mutation p.R80H 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CV-A461-01 12 64472756 64472756 G T SRGAP1 Missense_Mutation p.D395Y 0.20 deleterious(0) probably_damaging(0.99) TCGA-CV-A461-01 12 68719174 68719174 T C MDM1 Intron 0.27 TCGA-CV-A461-01 12 6933779 6933779 T G GPR162 Missense_Mutation p.F239V 0.21 deleterious(0.01) benign(0.344) TCGA-CV-A461-01 12 78573385 78573385 T C NAV3 Silent p.L1792L 0.22 TCGA-CV-A461-01 12 78582509 78582509 T A NAV3 Missense_Mutation p.C1981S 0.15 tolerated(0.11) benign(0.089) TCGA-CV-A461-01 12 78583812 78583812 C T NAV3 Missense_Mutation p.P2013L 0.15 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 12 7867803 7867803 C A DPPA3 Missense_Mutation p.T36K 0.25 deleterious(0.05) benign(0.331) TCGA-CV-A461-01 12 7982600 7982600 C A SLC2A14 Missense_Mutation p.R115L 0.36 tolerated(0.13) possibly_damaging(0.783) TCGA-CV-A461-01 12 81741330 81741330 C T PPFIA2 Silent p.R738R 0.19 TCGA-CV-A461-01 12 82147851 82147851 C G PPFIA2 Silent p.R50R 0.17 TCGA-CV-A461-01 12 86374156 86374156 T A MGAT4C Missense_Mutation p.L116F 0.25 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 12 9083498 9083498 G T PHC1 Silent p.A360A 0.13 TCGA-CV-A461-01 12 95656712 95656712 A G VEZT Missense_Mutation p.T97A 0.21 tolerated(0.22) benign(0.033) TCGA-CV-A461-01 12 96312657 96312657 T A CCDC38 Missense_Mutation p.E45D 0.24 deleterious(0.01) benign(0.031) TCGA-CV-A461-01 12 97112264 97112264 A G C12orf55 Silent p.T2256T 0.22 TCGA-CV-A461-01 13 102047708 102047708 G A NALCN Silent p.H39H 0.23 TCGA-CV-A461-01 13 107196398 107196398 C A ARGLU1 Silent p.L256L 0.35 TCGA-CV-A461-01 13 28877368 28877368 A G FLT1 Missense_Mutation p.I1318T 0.34 tolerated(0.64) benign(0.002) TCGA-CV-A461-01 13 33703645 33703645 T A STARD13 Missense_Mutation p.Q390L 0.34 tolerated(0.23) benign(0.354) TCGA-CV-A461-01 13 37011780 37011780 C A CCNA1 Silent p.I104I 0.22 TCGA-CV-A461-01 13 38924169 38924169 G T UFM1 Silent p.S12S 0.24 TCGA-CV-A461-01 13 45768834 45768834 G T KCTD4 5'UTR 0.40 TCGA-CV-A461-01 13 46425705 46425705 C G SIAH3 Missense_Mutation p.Q20H 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CV-A461-01 13 46679070 46679070 C T CPB2 Splice_Site p.X25_splice 0.32 TCGA-CV-A461-01 14 100173021 100173021 G T CYP46A1 Missense_Mutation p.A161S 0.29 tolerated(0.23) benign(0.118) TCGA-CV-A461-01 14 104028376 104028376 C T BAG5 5'UTR 0.24 TCGA-CV-A461-01 14 105204721 105204721 G A ADSSL1 Missense_Mutation p.V145M 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-CV-A461-01 14 19553454 19553454 C A POTEG Missense_Mutation p.S13Y 0.15 deleterious_low_confidence(0) benign(0.09) TCGA-CV-A461-01 14 20529093 20529093 C - OR4L1 Frame_Shift_Del p.I298* 0.24 TCGA-CV-A461-01 14 21542698 21542698 C A ARHGEF40 Missense_Mutation p.T270K 0.29 deleterious(0) probably_damaging(0.987) TCGA-CV-A461-01 14 21542699 21542699 G T ARHGEF40 Silent p.T270T 0.29 TCGA-CV-A461-01 14 24723870 24723870 C G TGM1 Silent p.T696T 0.18 TCGA-CV-A461-01 14 24975365 24975365 G T CMA1 Missense_Mutation p.P157T 0.13 tolerated(0.39) benign(0.193) TCGA-CV-A461-01 14 30100047 30100047 C A PRKD1 Missense_Mutation p.G525C 0.28 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 14 32562840 32562840 C T ARHGAP5 Missense_Mutation p.P989S 0.19 tolerated(0.12) possibly_damaging(0.463) TCGA-CV-A461-01 14 47120850 47120850 C G RPL10L Missense_Mutation p.K30N 0.18 deleterious(0.02) benign(0.349) TCGA-CV-A461-01 14 50778938 50778938 G T L2HGDH 5'UTR 0.29 TCGA-CV-A461-01 14 51387764 51387764 C A PYGL Missense_Mutation p.D228Y 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 14 51489654 51489654 C T TRIM9 Missense_Mutation p.A314T 0.29 deleterious(0.02) benign(0.254) TCGA-CV-A461-01 14 53110251 53110251 C A ERO1L 3'UTR 0.16 TCGA-CV-A461-01 14 64694441 64694441 G T SYNE2 3'Flank 0.29 TCGA-CV-A461-01 14 65209721 65209721 C G PLEKHG3 Missense_Mutation p.S931C 0.20 deleterious(0) probably_damaging(0.94) TCGA-CV-A461-01 14 68271955 68271955 T G ZFYVE26 Missense_Mutation p.E417A 0.24 deleterious(0) probably_damaging(0.995) TCGA-CV-A461-01 14 70925127 70925127 T C ADAM21 Missense_Mutation p.I304T 0.25 tolerated(0.58) benign(0.038) TCGA-CV-A461-01 14 86088738 86088738 G T FLRT2 Missense_Mutation p.G294W 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 14 92472410 92472410 C T TRIP11 Missense_Mutation p.S637N 0.16 tolerated(0.16) benign(0.021) TCGA-CV-A461-01 14 93995643 93995643 A G UNC79 Missense_Mutation p.E178G 0.13 deleterious(0.02) probably_damaging(0.98) TCGA-CV-A461-01 14 94964667 94964667 G T SERPINA12 Missense_Mutation p.P23Q 0.22 tolerated(0.38) benign(0.027) TCGA-CV-A461-01 14 95054204 95054204 A T SERPINA5 Missense_Mutation p.M169L 0.25 tolerated(0.14) benign(0) TCGA-CV-A461-01 15 100331990 100331990 T A AC090825.1 5'Flank 0.23 TCGA-CV-A461-01 15 100332036 100332036 A T AC090825.1 5'Flank 0.27 TCGA-CV-A461-01 15 101554519 101554519 A C LRRK1 Splice_Site p.X474_splice 0.14 TCGA-CV-A461-01 15 20644077 20644077 T G HERC2P3 Splice_Site 0.25 TCGA-CV-A461-01 15 20644293 20644293 C A HERC2P3 RNA 0.15 TCGA-CV-A461-01 15 32928536 32928536 G T ARHGAP11A Missense_Mutation p.W521L 0.20 deleterious(0) probably_damaging(0.996) TCGA-CV-A461-01 15 34295412 34295412 T A AVEN Splice_Site p.X90_splice 0.20 TCGA-CV-A461-01 15 42476799 42476799 C A VPS39 Missense_Mutation p.D212Y 0.19 deleterious(0) probably_damaging(0.985) TCGA-CV-A461-01 15 43508523 43508523 C G EPB42 Missense_Mutation p.A77P 0.23 deleterious(0.04) benign(0.065) TCGA-CV-A461-01 15 45388052 45388052 C T DUOX2 Missense_Mutation p.G1352S 0.22 tolerated(0.75) benign(0.089) TCGA-CV-A461-01 15 45983427 45983427 G A SQRDL 3'UTR 0.17 TCGA-CV-A461-01 15 49531541 49531541 G T GALK2 Missense_Mutation p.V161L 0.15 deleterious(0.01) benign(0.043) TCGA-CV-A461-01 15 51285690 51285690 G A AP4E1 Missense_Mutation p.M738I 0.17 tolerated(0.22) benign(0.001) TCGA-CV-A461-01 15 56285831 56285831 G T NEDD4 5'UTR 0.17 TCGA-CV-A461-01 15 57976733 57976733 A T GCOM1 Intron 0.23 TCGA-CV-A461-01 15 58284929 58284929 T G ALDH1A2 Missense_Mutation p.K258Q 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 15 59499845 59499845 G T LDHAL6B Nonsense_Mutation p.G236* 0.19 TCGA-CV-A461-01 15 69080142 69080142 G C ANP32A Missense_Mutation p.I57M 0.23 deleterious(0.01) probably_damaging(0.941) TCGA-CV-A461-01 15 79089016 79089016 C A ADAMTS7 Missense_Mutation p.E245D 0.22 deleterious(0) probably_damaging(0.991) TCGA-CV-A461-01 15 86259038 86259038 T C AKAP13 Silent p.R1877R 0.18 TCGA-CV-A461-01 15 88678435 88678435 C A NTRK3 Missense_Mutation p.K367N 0.21 tolerated(0.7) benign(0.002) TCGA-CV-A461-01 15 89002885 89002885 T C MRPL46 Missense_Mutation p.K267E 0.24 tolerated(1) benign(0.003) TCGA-CV-A461-01 15 89430511 89430511 C A HAPLN3 Missense_Mutation p.V7F 0.23 tolerated(0.37) unknown(0) TCGA-CV-A461-01 16 14312814 14312814 A C MKL2 Missense_Mutation p.S218R 0.15 tolerated(0.22) benign(0.005) TCGA-CV-A461-01 16 20576070 20576070 A T ACSM2B Missense_Mutation p.L33Q 0.14 tolerated(0.24) benign(0.004) TCGA-CV-A461-01 16 21073917 21073917 G T DNAH3 Nonsense_Mutation p.C1202* 0.18 TCGA-CV-A461-01 16 23767242 23767242 C A CHP2 Missense_Mutation p.P72H 0.33 deleterious(0.04) benign(0.397) TCGA-CV-A461-01 16 48337193 48337193 G T LONP2 Missense_Mutation p.R591L 0.40 tolerated(0.21) benign(0.039) TCGA-CV-A461-01 16 4925363 4925363 G T UBN1 Silent p.V984V 0.40 TCGA-CV-A461-01 16 4925364 4925364 G T UBN1 Missense_Mutation p.A985S 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-CV-A461-01 16 4941824 4941824 C G PPL Silent p.G652G 0.29 TCGA-CV-A461-01 16 4941826 4941826 C A PPL Missense_Mutation p.G652W 0.29 deleterious(0.03) possibly_damaging(0.447) TCGA-CV-A461-01 16 51172863 51172863 G C SALL1 Missense_Mutation p.N1090K 0.44 deleterious(0) probably_damaging(0.993) TCGA-CV-A461-01 16 51172930 51172930 C T SALL1 Missense_Mutation p.G1068D 0.53 deleterious(0) benign(0.258) TCGA-CV-A461-01 16 58072217 58072217 G - MMP15 Frame_Shift_Del p.R120Qfs*2 0.33 TCGA-CV-A461-01 16 66600084 66600084 G T CKLF 3'Flank 0.36 TCGA-CV-A461-01 16 69056738 69056738 G A TANGO6 Missense_Mutation p.M950I 0.48 deleterious(0.01) benign(0.028) TCGA-CV-A461-01 16 703414 703414 C T WDR90 Missense_Mutation p.T399M 0.36 deleterious(0) possibly_damaging(0.877) TCGA-CV-A461-01 16 81925123 81925123 A C PLCG2 Missense_Mutation p.K305T 0.35 deleterious(0.02) probably_damaging(1) TCGA-CV-A461-01 16 89662999 89662999 C A CPNE7 Silent p.A624A 0.47 TCGA-CV-A461-01 17 10370101 10370101 C A MYH4 Intron 0.22 TCGA-CV-A461-01 17 11894356 11894356 G C ZNF18 Missense_Mutation p.S171C 0.17 tolerated(0.11) benign(0.235) TCGA-CV-A461-01 17 14110158 14110158 C A COX10 Silent p.S320S 0.19 TCGA-CV-A461-01 17 1540343 1540343 C T SCARF1 Missense_Mutation p.G460R 0.23 deleterious(0.02) benign(0.417) TCGA-CV-A461-01 17 16455957 16455957 C G ZNF287 Missense_Mutation p.R500T 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-CV-A461-01 17 17127250 17127250 C T FLCN Missense_Mutation p.G202S 0.16 tolerated(1) benign(0.001) TCGA-CV-A461-01 17 2202737 2202737 C G SMG6 Missense_Mutation p.G437A 0.22 tolerated(0.1) possibly_damaging(0.624) TCGA-CV-A461-01 17 27244340 27244340 C A PHF12 Missense_Mutation p.R366L 0.15 deleterious(0) benign(0.281) TCGA-CV-A461-01 17 27434126 27434126 C G MYO18A Missense_Mutation p.R1138P 0.18 tolerated(0.07) probably_damaging(1) TCGA-CV-A461-01 17 32962097 32962097 C G TMEM132E Silent p.T566T 0.14 TCGA-CV-A461-01 17 33679276 33679276 C A SLFN11 3'UTR 0.30 TCGA-CV-A461-01 17 33738761 33738761 G A SLFN12 Missense_Mutation p.L445F 0.14 deleterious(0) probably_damaging(0.997) TCGA-CV-A461-01 17 36489266 36489266 C T GPR179 Silent p.G635G 0.19 TCGA-CV-A461-01 17 36489267 36489267 C T GPR179 Missense_Mutation p.G635E 0.19 deleterious(0) probably_damaging(0.991) TCGA-CV-A461-01 17 36489268 36489268 C T GPR179 Missense_Mutation p.G635R 0.19 deleterious(0.02) probably_damaging(0.94) TCGA-CV-A461-01 17 40058022 40058022 C T ACLY Silent p.E370E 0.22 TCGA-CV-A461-01 17 40705085 40705085 G T HSD17B1 Intron 0.21 TCGA-CV-A461-01 17 4937013 4937013 C A SLC52A1 Silent p.P257P 0.23 TCGA-CV-A461-01 17 5433956 5433956 G A NLRP1 Missense_Mutation p.A1122V 0.31 tolerated(0.06) probably_damaging(0.979) TCGA-CV-A461-01 17 56540660 56540660 G A HSF5 Missense_Mutation p.P342L 0.19 tolerated(0.06) possibly_damaging(0.71) TCGA-CV-A461-01 17 59668082 59668082 G T NACA2 Missense_Mutation p.Q154K 0.20 tolerated(0.43) possibly_damaging(0.678) TCGA-CV-A461-01 17 61791372 61791372 C A STRADA Missense_Mutation p.V74L 0.24 tolerated(0.27) benign(0.025) TCGA-CV-A461-01 17 66040031 66040031 A G KPNA2 Silent p.A336A 0.18 TCGA-CV-A461-01 17 66267770 66267770 A C SLC16A6 Missense_Mutation p.I177M 0.16 tolerated(0.06) benign(0.301) TCGA-CV-A461-01 17 67023953 67023953 G A ABCA9 Missense_Mutation p.S540L 0.19 deleterious(0.05) possibly_damaging(0.651) TCGA-CV-A461-01 17 7480724 7480724 G T EIF4A1 Missense_Mutation p.R229S 0.15 tolerated(0.15) benign(0.133) TCGA-CV-A461-01 17 7480740 7480740 C T EIF4A1 Missense_Mutation p.L235F 0.15 deleterious(0) possibly_damaging(0.798) TCGA-CV-A461-01 17 7529792 7529792 C G SAT2 Missense_Mutation p.E162D 0.22 tolerated(0.12) benign(0) TCGA-CV-A461-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.28 deleterious(0) probably_damaging(0.996) TCGA-CV-A461-01 17 78196510 78196510 C G SLC26A11 Silent p.S97S 0.20 TCGA-CV-A461-01 17 78389025 78389025 G C ENDOV Missense_Mutation p.E11Q 0.12 deleterious(0.04) benign(0.094) TCGA-CV-A461-01 17 80021368 80021368 C G DUS1L Missense_Mutation p.E125Q 0.18 deleterious(0.01) possibly_damaging(0.664) TCGA-CV-A461-01 17 8248781 8248781 T C ODF4 Missense_Mutation p.L192P 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 18 333115 333115 T A COLEC12 Silent p.T615T 0.14 TCGA-CV-A461-01 18 47511159 47511159 C T MYO5B Missense_Mutation p.G292E 0.30 tolerated(0.26) benign(0.019) TCGA-CV-A461-01 18 48447542 48447542 T G ME2 Nonsense_Mutation p.Y347* 0.21 TCGA-CV-A461-01 18 51800403 51800403 G T POLI Missense_Mutation p.V117L 0.31 deleterious(0.04) benign(0.107) TCGA-CV-A461-01 18 6851075 6851075 A C ARHGAP28 Missense_Mutation p.T37P 0.46 tolerated(0.29) benign(0.002) TCGA-CV-A461-01 18 6976041 6976041 C T LAMA1 Silent p.R2128R 0.50 TCGA-CV-A461-01 18 72228101 72228101 G A CNDP1 Missense_Mutation p.G105D 0.27 deleterious(0.03) benign(0.066) TCGA-CV-A461-01 18 7906572 7906572 C A PTPRM Missense_Mutation p.H180N 0.42 deleterious(0.02) possibly_damaging(0.834) TCGA-CV-A461-01 19 10940839 10940839 C - DNM2 Frame_Shift_Del p.P778Lfs*7 0.31 TCGA-CV-A461-01 19 1360487 1360487 G T MUM1 Silent p.P190P 0.35 TCGA-CV-A461-01 19 13873432 13873432 G A CCDC130 Silent p.R247R 0.66 TCGA-CV-A461-01 19 14153563 14153563 G T IL27RA Missense_Mutation p.G244W 0.46 deleterious(0.01) possibly_damaging(0.784) TCGA-CV-A461-01 19 15228702 15228702 C T ILVBL Silent p.E392E 0.20 TCGA-CV-A461-01 19 18100536 18100536 C G KCNN1 Silent p.A394A 0.17 TCGA-CV-A461-01 19 22157133 22157133 C A ZNF208 Missense_Mutation p.G235C 0.41 deleterious(0) probably_damaging(0.986) TCGA-CV-A461-01 19 2878453 2878453 G A ZNF556 3'UTR 0.36 TCGA-CV-A461-01 19 36369532 36369532 C A APLP1 Missense_Mutation p.N542K 0.08 tolerated(0.7) benign(0.018) TCGA-CV-A461-01 19 37441338 37441338 C T ZNF568 Missense_Mutation p.S428F 0.17 deleterious(0) probably_damaging(0.997) TCGA-CV-A461-01 19 37678134 37678134 C A ZNF585B Missense_Mutation p.W102L 0.19 tolerated(0.38) benign(0.001) TCGA-CV-A461-01 19 37678135 37678135 A T ZNF585B Missense_Mutation p.W102R 0.19 tolerated(0.2) benign(0.001) TCGA-CV-A461-01 19 38817296 38817296 T A KCNK6 Missense_Mutation p.L129Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-CV-A461-01 19 39888291 39888291 C T MED29 Silent p.V206V 0.19 TCGA-CV-A461-01 19 39994820 39994820 C T DLL3 Silent p.T254T 0.16 TCGA-CV-A461-01 19 40151103 40151103 T G LGALS16 Missense_Mutation p.I124M 0.62 tolerated(0.47) benign(0.036) TCGA-CV-A461-01 19 42355840 42355840 T A DMRTC2 3'UTR 0.18 TCGA-CV-A461-01 19 42713939 42713941 CAC - DEDD2 In_Frame_Del p.G167del 0.42 TCGA-CV-A461-01 19 43358345 43358345 A T PSG10P RNA 0.20 TCGA-CV-A461-01 19 43372220 43372220 A T PSG1 Missense_Mutation p.F426I 0.22 tolerated_low_confidence(0.11) benign(0) TCGA-CV-A461-01 19 44057827 44057827 G - XRCC1 Frame_Shift_Del p.F142Lfs*3 0.24 TCGA-CV-A461-01 19 4447568 4447568 C T UBXN6 Silent p.K198K 0.42 TCGA-CV-A461-01 19 44981658 44981658 T A ZNF180 Missense_Mutation p.N347I 0.25 deleterious(0.03) benign(0.215) TCGA-CV-A461-01 19 45774876 45774876 C T MARK4 Silent p.Y232Y 0.12 TCGA-CV-A461-01 19 45988832 45988832 T A RTN2 3'UTR 0.18 TCGA-CV-A461-01 19 47354031 47354031 C A AP2S1 5'UTR 0.21 TCGA-CV-A461-01 19 50059064 50059064 C A NOSIP Missense_Mutation p.A284S 0.14 tolerated(0.23) possibly_damaging(0.459) TCGA-CV-A461-01 19 51451950 51451950 C G KLK5 Missense_Mutation p.Q224H 0.25 tolerated(0.06) benign(0.001) TCGA-CV-A461-01 19 52249312 52249312 C A FPR1 Silent p.L312L 0.21 TCGA-CV-A461-01 19 52869692 52869692 G C ZNF610 Missense_Mutation p.S354T 0.27 tolerated(0.25) benign(0.025) TCGA-CV-A461-01 19 54394954 54394954 A G PRKCG Missense_Mutation p.M186V 0.20 deleterious(0.01) benign(0.319) TCGA-CV-A461-01 19 55378000 55378000 G A KIR3DL2 Silent p.Q394Q 0.21 TCGA-CV-A461-01 19 56313039 56313039 G T NLRP11 Missense_Mutation p.S690R 0.26 deleterious(0.02) possibly_damaging(0.551) TCGA-CV-A461-01 19 58967389 58967389 C T ZNF324B Missense_Mutation p.R360C 0.18 deleterious(0) probably_damaging(0.988) TCGA-CV-A461-01 19 6166026 6166026 C T ACSBG2 Silent p.N246N 0.25 TCGA-CV-A461-01 1 103471417 103471417 G T COL11A1 Missense_Mutation p.L608M 0.17 unknown(0) TCGA-CV-A461-01 1 12943024 12943024 G A PRAMEF4 Silent p.R64R 0.24 TCGA-CV-A461-01 1 142713712 142713712 A T RP11-417J8.6 RNA 0.11 TCGA-CV-A461-01 1 145293581 145293581 G T NBPF10 Splice_Site p.X59_splice 0.04 TCGA-CV-A461-01 1 152082049 152082049 C T TCHH Missense_Mutation p.R1215Q 0.18 unknown(0) TCGA-CV-A461-01 1 152484057 152484057 G A LCE5A Missense_Mutation p.C16Y 0.31 tolerated_low_confidence(0.06) unknown(0) TCGA-CV-A461-01 1 152777710 152777710 C T LCE1C Missense_Mutation p.R82H 0.15 tolerated_low_confidence(0.28) unknown(0) TCGA-CV-A461-01 1 153004998 153004998 C A SPRR1B Silent p.P59P 0.15 TCGA-CV-A461-01 1 153233515 153233515 C T LOR Silent p.G30G 0.09 TCGA-CV-A461-01 1 154296125 154296125 G A AQP10 Missense_Mutation p.G184R 0.33 tolerated(0.11) benign(0.073) TCGA-CV-A461-01 1 154297022 154297022 G C AQP10 3'UTR 0.18 TCGA-CV-A461-01 1 15819237 15819237 T G CASP9 3'UTR 0.20 TCGA-CV-A461-01 1 158650415 158650415 C A SPTA1 Silent p.G212G 0.27 TCGA-CV-A461-01 1 158650416 158650416 C A SPTA1 Missense_Mutation p.G212V 0.26 tolerated(0.66) possibly_damaging(0.694) TCGA-CV-A461-01 1 159043310 159043310 C G AIM2 Splice_Site 0.16 TCGA-CV-A461-01 1 160466127 160466127 C A SLAMF6 Nonsense_Mutation p.E36* 0.14 TCGA-CV-A461-01 1 161044038 161044038 G A PVRL4 Missense_Mutation p.R376W 0.13 deleterious(0) probably_damaging(0.982) TCGA-CV-A461-01 1 162724444 162724444 G C DDR2 Missense_Mutation p.W72C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 1 165667715 165667715 A G ALDH9A1 Silent p.T27T 0.15 TCGA-CV-A461-01 1 169700973 169700973 T A SELE Intron 0.39 TCGA-CV-A461-01 1 17249221 17249221 G T CROCC Missense_Mutation p.A42S 0.24 benign(0.039) TCGA-CV-A461-01 1 175048699 175048699 C A TNN Missense_Mutation p.R214S 0.29 tolerated(0.35) benign(0.007) TCGA-CV-A461-01 1 176809324 176809324 G A PAPPA2 Missense_Mutation p.G1740S 0.19 deleterious(0.01) probably_damaging(1) TCGA-CV-A461-01 1 181702879 181702879 G T CACNA1E Silent p.V1085V 0.42 TCGA-CV-A461-01 1 181767620 181767620 C T CACNA1E Nonsense_Mutation p.Q2198* 0.26 TCGA-CV-A461-01 1 181767889 181767889 G T CACNA1E Missense_Mutation p.R2287S 0.40 tolerated(0.34) possibly_damaging(0.599) TCGA-CV-A461-01 1 190234044 190234044 C G BRINP3 Missense_Mutation p.S190T 0.23 tolerated(0.14) benign(0.21) TCGA-CV-A461-01 1 19209672 19209672 C A ALDH4A1 Silent p.S208S 0.22 TCGA-CV-A461-01 1 196876140 196876140 G T CFHR4 Missense_Mutation p.G196C 0.21 deleterious(0.03) probably_damaging(1) TCGA-CV-A461-01 1 200971388 200971388 G A KIF21B Missense_Mutation p.R435W 0.18 deleterious(0) probably_damaging(0.988) TCGA-CV-A461-01 1 200971389 200971389 C T KIF21B Silent p.L434L 0.17 TCGA-CV-A461-01 1 202287103 202287103 C G LGR6 Missense_Mutation p.L558V 0.31 deleterious(0) probably_damaging(0.997) TCGA-CV-A461-01 1 202287123 202287123 C T LGR6 Silent p.I564I 0.30 TCGA-CV-A461-01 1 202287687 202287687 C T LGR6 Silent p.I752I 0.28 TCGA-CV-A461-01 1 202287818 202287818 C T LGR6 Missense_Mutation p.S796F 0.29 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 1 202287897 202287897 C G LGR6 Silent p.L822L 0.31 TCGA-CV-A461-01 1 203709057 203709057 G T ATP2B4 3'UTR 0.12 TCGA-CV-A461-01 1 20440615 20440615 C G PLA2G2D Missense_Mutation p.G144R 0.20 tolerated(0.62) benign(0.003) TCGA-CV-A461-01 1 204966434 204966434 C A NFASC Silent p.T973T 0.39 TCGA-CV-A461-01 1 207653360 207653360 T A CR2 Silent p.I1050I 0.35 TCGA-CV-A461-01 1 215848242 215848242 C G USH2A Silent p.T4337T 0.24 TCGA-CV-A461-01 1 215914857 215914857 C T USH2A Silent p.R3857R 0.13 TCGA-CV-A461-01 1 216372990 216372990 A T USH2A Missense_Mutation p.S1264T 0.29 benign(0.022) TCGA-CV-A461-01 1 217783730 217783730 C A GPATCH2 Missense_Mutation p.R344I 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 1 21889728 21889728 C A ALPL Silent p.T141T 0.24 TCGA-CV-A461-01 1 222903001 222903001 A T BROX Nonsense_Mutation p.K266* 0.29 TCGA-CV-A461-01 1 223175932 223175932 G C DISP1 Missense_Mutation p.C398S 0.14 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 1 225702367 225702367 T C ENAH Silent p.S383S 0.18 TCGA-CV-A461-01 1 226349347 226349347 C G ACBD3 Missense_Mutation p.E205Q 0.44 tolerated(0.21) benign(0.403) TCGA-CV-A461-01 1 228291003 228291003 A G C1orf35 5'UTR 0.38 TCGA-CV-A461-01 1 228336071 228336071 G T GUK1 Intron 0.38 TCGA-CV-A461-01 1 23234652 23234652 C T EPHB2 Silent p.T782T 0.06 TCGA-CV-A461-01 1 237777849 237777849 G C RYR2 Silent p.R1807R 0.28 TCGA-CV-A461-01 1 240256804 240256804 G T FMN2 Silent p.P465P 0.08 TCGA-CV-A461-01 1 244736050 244736050 C T C1orf101 Silent p.A642A 0.39 TCGA-CV-A461-01 1 247875869 247875869 C G OR6F1 Silent p.L63L 0.13 TCGA-CV-A461-01 1 247921267 247921267 G C OR1C1 Missense_Mutation p.L148V 0.26 deleterious(0.02) possibly_damaging(0.829) TCGA-CV-A461-01 1 249107234 249107234 C G SH3BP5L Missense_Mutation p.S222T 0.20 deleterious(0.03) probably_damaging(0.978) TCGA-CV-A461-01 1 249212489 249212489 A G PGBD2 Missense_Mutation p.Q569R 0.24 tolerated(0.09) benign(0.029) TCGA-CV-A461-01 1 26752798 26752798 A C LIN28A Missense_Mutation p.K160T 0.28 deleterious(0) probably_damaging(0.983) TCGA-CV-A461-01 1 31740720 31740720 G A SNRNP40 Silent p.D306D 0.21 TCGA-CV-A461-01 1 33236510 33236510 C G KIAA1522 Missense_Mutation p.T577R 0.15 deleterious(0) unknown(0) TCGA-CV-A461-01 1 3555315 3555315 C A WRAP73 Missense_Mutation p.Q137H 0.26 deleterious(0.04) benign(0.009) TCGA-CV-A461-01 1 36931963 36931963 A G CSF3R Missense_Mutation p.F863L 0.29 tolerated(0.09) benign(0.125) TCGA-CV-A461-01 1 38281095 38281095 G A MTF1 Missense_Mutation p.P659S 0.21 tolerated(0.15) benign(0.063) TCGA-CV-A461-01 1 41990557 41990557 T C HIVEP3 Silent p.V1744V 0.18 TCGA-CV-A461-01 1 51926824 51926824 T A EPS15 Splice_Site p.X168_splice 0.21 TCGA-CV-A461-01 1 55118986 55118986 G A MROH7 Silent p.L129L 0.22 TCGA-CV-A461-01 1 57411576 57411576 C G C8B Silent p.G341G 0.24 TCGA-CV-A461-01 1 57422559 57422559 G A C8B Missense_Mutation p.P92S 0.23 deleterious(0) probably_damaging(0.99) TCGA-CV-A461-01 1 6195444 6195444 C A CHD5 Nonsense_Mutation p.E906* 0.18 TCGA-CV-A461-01 1 64117371 64117371 G A PGM1 Missense_Mutation p.A456T 0.25 deleterious(0.03) possibly_damaging(0.811) TCGA-CV-A461-01 1 64643490 64643490 A T ROR1 Missense_Mutation p.H589L 0.20 tolerated(0.67) benign(0.03) TCGA-CV-A461-01 1 65858302 65858302 G T DNAJC6 Missense_Mutation p.D553Y 0.24 deleterious(0) probably_damaging(0.931) TCGA-CV-A461-01 1 68564316 68564316 C T WLS Silent p.%3D 0.22 TCGA-CV-A461-01 1 71477884 71477884 T A PTGER3 Intron 0.22 TCGA-CV-A461-01 1 71512620 71512620 C A PTGER3 Missense_Mutation p.R214L 0.21 tolerated(0.28) benign(0.258) TCGA-CV-A461-01 1 76363684 76363684 T C MSH4 Silent p.H816H 0.25 TCGA-CV-A461-01 1 7725032 7725032 G A CAMTA1 Missense_Mutation p.G809R 0.25 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-CV-A461-01 1 91728095 91728095 G A HFM1 Silent p.P1343P 0.16 TCGA-CV-A461-01 1 91818635 91818635 A G HFM1 Missense_Mutation p.F602L 0.26 deleterious(0.03) probably_damaging(1) TCGA-CV-A461-01 1 97771826 97771826 G C DPYD Missense_Mutation p.R696G 0.26 tolerated(0.17) benign(0.005) TCGA-CV-A461-01 20 10036259 10036259 A T ANKEF1 Missense_Mutation p.K761M 0.19 deleterious(0) possibly_damaging(0.907) TCGA-CV-A461-01 20 17437036 17437036 G T PCSK2 Missense_Mutation p.G382V 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 20 17475167 17475167 G C BFSP1 Missense_Mutation p.P517R 0.22 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 20 210098 210098 C T DEFB129 Nonsense_Mutation p.Q80* 0.20 TCGA-CV-A461-01 20 2944950 2944950 G T PTPRA Silent p.L9L 0.20 TCGA-CV-A461-01 20 31763255 31763255 C G BPIFA2 Missense_Mutation p.D151E 0.22 tolerated(0.05) possibly_damaging(0.642) TCGA-CV-A461-01 20 37191329 37191329 G A RALGAPB Missense_Mutation p.G1229E 0.17 tolerated(1) benign(0.003) TCGA-CV-A461-01 20 40076562 40076562 C A CHD6 Nonsense_Mutation p.G1245* 0.16 TCGA-CV-A461-01 20 40076563 40076563 C G CHD6 Silent p.L1244L 0.17 TCGA-CV-A461-01 20 44640844 44640844 A T MMP9 Nonsense_Mutation p.K356* 0.19 TCGA-CV-A461-01 20 44708071 44708071 C T NCOA5 5'UTR 0.10 TCGA-CV-A461-01 20 44839167 44839167 G C CDH22 Silent p.T355T 0.21 TCGA-CV-A461-01 20 45217895 45217895 C T SLC13A3 Splice_Site p.X307_splice 0.26 TCGA-CV-A461-01 20 50418837 50418837 C T SALL4 Silent p.A37A 0.19 TCGA-CV-A461-01 20 56139391 56139391 G C PCK1 Silent p.P376P 0.23 TCGA-CV-A461-01 20 60697741 60697742 - C LSM14B Frame_Shift_Ins p.Y9Vfs*41 0.19 TCGA-CV-A461-01 20 61143518 61143518 G A C20orf166 5'Flank 0.17 TCGA-CV-A461-01 20 61542307 61542307 C T DIDO1 Missense_Mutation p.E220K 0.22 benign(0.032) TCGA-CV-A461-01 20 9404447 9404447 A G PLCB4 Missense_Mutation p.N779S 0.21 tolerated(0.08) benign(0.021) TCGA-CV-A461-01 21 30445983 30445983 T A CCT8 5'UTR 0.13 TCGA-CV-A461-01 21 38115850 38115850 C T SIM2 Silent p.P387P 0.27 TCGA-CV-A461-01 21 40547564 40547564 T A PSMG1 Silent p.L273L 0.17 TCGA-CV-A461-01 21 42717633 42717633 G T FAM3B Missense_Mutation p.A123S 0.20 tolerated(0.78) benign(0.037) TCGA-CV-A461-01 21 43176869 43176870 - C RIPK4 Frame_Shift_Ins p.E97Gfs*65 0.22 TCGA-CV-A461-01 21 47918501 47918501 C T DIP2A Missense_Mutation p.S137L 0.19 deleterious(0) possibly_damaging(0.885) TCGA-CV-A461-01 22 16449717 16449717 G T OR11H1 Missense_Mutation p.Q30K 0.12 deleterious(0) benign(0.001) TCGA-CV-A461-01 22 21106021 21106021 C A PI4KA Missense_Mutation p.G1004W 0.24 deleterious(0.02) probably_damaging(0.985) TCGA-CV-A461-01 22 24967993 24967993 G C SNRPD3 3'UTR 0.10 TCGA-CV-A461-01 22 25601305 25601305 C A CRYBB3 Missense_Mutation p.A149E 0.10 deleterious(0) probably_damaging(0.978) TCGA-CV-A461-01 22 26317307 26317307 C T MYO18B Silent p.L1816L 0.40 TCGA-CV-A461-01 22 29885177 29885177 C A NEFH Silent p.A516A 0.22 TCGA-CV-A461-01 22 32588952 32588952 T G RFPL2 Missense_Mutation p.K165Q 0.21 tolerated(0.15) probably_damaging(0.999) TCGA-CV-A461-01 22 36962528 36962528 G A CACNG2 Missense_Mutation p.A103V 0.17 deleterious(0.02) benign(0.042) TCGA-CV-A461-01 22 38621482 38621482 C T TMEM184B Missense_Mutation p.V246I 0.17 tolerated(0.07) benign(0.202) TCGA-CV-A461-01 22 39414289 39414289 G C APOBEC3C Missense_Mutation p.W157S 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 22 50280806 50280806 T G ZBED4 Missense_Mutation p.L1166V 0.21 tolerated(0.15) probably_damaging(0.971) TCGA-CV-A461-01 2 100210323 100210323 G T AFF3 Silent p.A625A 0.08 TCGA-CV-A461-01 2 108627416 108627416 A T SLC5A7 3'UTR 0.38 TCGA-CV-A461-01 2 122125290 122125290 G A CLASP1 Missense_Mutation p.R1254C 0.28 tolerated(0.09) probably_damaging(0.996) TCGA-CV-A461-01 2 131459952 131459952 C A FAR2P3 RNA 0.19 TCGA-CV-A461-01 2 136567555 136567555 C A LCT Nonsense_Mutation p.E788* 0.24 TCGA-CV-A461-01 2 138169329 138169329 G T THSD7B Missense_Mutation p.G949V 0.20 deleterious(0) probably_damaging(0.979) TCGA-CV-A461-01 2 152423820 152423820 C A NEB Missense_Mutation p.M6006I 0.28 benign(0.01) TCGA-CV-A461-01 2 153575218 153575218 C T ARL6IP6 Missense_Mutation p.S27L 0.17 tolerated_low_confidence(0.41) benign(0) TCGA-CV-A461-01 2 162276742 162276742 A G TBR1 Silent p.A388A 0.13 TCGA-CV-A461-01 2 164466530 164466530 C T FIGN Silent p.R604R 0.23 TCGA-CV-A461-01 2 166848149 166848149 C T SCN1A Missense_Mutation p.S1879N 0.22 deleterious(0) possibly_damaging(0.535) TCGA-CV-A461-01 2 177034167 177034167 G T HOXD3 Missense_Mutation p.G109C 0.31 deleterious(0.04) probably_damaging(0.979) TCGA-CV-A461-01 2 179431082 179431082 C T TTN Missense_Mutation p.D26593N 0.22 TCGA-CV-A461-01 2 179435190 179435190 T A TTN Silent p.T25223T 0.13 TCGA-CV-A461-01 2 179587599 179587599 G C TTN Missense_Mutation p.Q7343E 0.23 TCGA-CV-A461-01 2 179602967 179602967 C T TTN Missense_Mutation p.R4738Q 0.22 TCGA-CV-A461-01 2 179633560 179633560 C A TTN Missense_Mutation p.W3001C 0.17 TCGA-CV-A461-01 2 179642595 179642595 G T TTN Missense_Mutation p.P1439H 0.27 TCGA-CV-A461-01 2 187703739 187703739 G T ZSWIM2 Nonsense_Mutation p.C147* 0.05 TCGA-CV-A461-01 2 1891338 1891338 C G MYT1L Missense_Mutation p.R853P 0.21 deleterious(0) benign(0.088) TCGA-CV-A461-01 2 189870120 189870120 T A COL3A1 Silent p.R992R 0.19 TCGA-CV-A461-01 2 189876558 189876558 G C COL3A1 3'UTR 0.15 TCGA-CV-A461-01 2 189931195 189931195 C A COL5A2 Missense_Mutation p.G495V 0.26 probably_damaging(0.998) TCGA-CV-A461-01 2 19553164 19553164 C A OSR1 Missense_Mutation p.G135C 0.19 deleterious(0.04) possibly_damaging(0.855) TCGA-CV-A461-01 2 196771688 196771688 T C DNAH7 Missense_Mutation p.R1384G 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 2 202343226 202343226 A G STRADB Silent p.T324T 0.21 TCGA-CV-A461-01 2 207173026 207173026 A T ZDBF2 Missense_Mutation p.E1258D 0.25 deleterious(0.03) benign(0.217) TCGA-CV-A461-01 2 210557934 210557934 C A MAP2 Missense_Mutation p.P347Q 0.19 deleterious_low_confidence(0.05) possibly_damaging(0.548) TCGA-CV-A461-01 2 211081170 211081170 G A ACADL Missense_Mutation p.T146I 0.25 tolerated(0.27) benign(0.009) TCGA-CV-A461-01 2 216182916 216182916 G T ATIC Missense_Mutation p.L61F 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 2 216992302 216992303 - A XRCC5 Frame_Shift_Ins p.T283Nfs*17 0.22 TCGA-CV-A461-01 2 219103471 219103471 G T ARPC2 Missense_Mutation p.R118L 0.06 deleterious(0) probably_damaging(0.975) TCGA-CV-A461-01 2 219507194 219507194 T C ZNF142 Missense_Mutation p.K1349E 0.21 tolerated(0.12) benign(0.292) TCGA-CV-A461-01 2 220409616 220409616 G A TMEM198 Splice_Site p.X56_splice 0.12 TCGA-CV-A461-01 2 220494070 220494070 A T SLC4A3 Missense_Mutation p.E141V 0.21 tolerated_low_confidence(0.08) benign(0.326) TCGA-CV-A461-01 2 224462215 224462215 A G SCG2 Missense_Mutation p.Y596H 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 2 226446970 226446970 G T NYAP2 Missense_Mutation p.L279F 0.25 tolerated(0.63) benign(0.188) TCGA-CV-A461-01 2 226447564 226447564 C T NYAP2 Silent p.P477P 0.22 TCGA-CV-A461-01 2 228118290 228118290 T C COL4A3 Missense_Mutation p.L234S 0.22 probably_damaging(0.927) TCGA-CV-A461-01 2 228881799 228881799 G T SPHKAP Silent p.A1257A 0.28 TCGA-CV-A461-01 2 233271598 233271598 T G ALPPL2 5'UTR 0.18 TCGA-CV-A461-01 2 242169037 242169037 G A HDLBP Silent p.L1262L 0.11 TCGA-CV-A461-01 2 27604445 27604445 G T PPM1G 3'UTR 0.24 TCGA-CV-A461-01 2 32640703 32640703 G T BIRC6 Missense_Mutation p.G782C 0.17 possibly_damaging(0.671) TCGA-CV-A461-01 2 39294839 39294839 A G SOS1 Missense_Mutation p.V48A 0.20 deleterious(0) benign(0.202) TCGA-CV-A461-01 2 40657172 40657172 C G SLC8A1 Silent p.V83V 0.24 TCGA-CV-A461-01 2 50573846 50573846 G A NRXN1 Intron 0.33 TCGA-CV-A461-01 2 50733732 50733732 C T NRXN1 Missense_Mutation p.A840T 0.20 deleterious(0.05) possibly_damaging(0.869) TCGA-CV-A461-01 2 54856088 54856088 C A SPTBN1 Missense_Mutation p.P606H 0.17 deleterious(0) probably_damaging(0.987) TCGA-CV-A461-01 2 56420107 56420107 C A CCDC85A Missense_Mutation p.H258N 0.12 tolerated_low_confidence(0.12) probably_damaging(0.985) TCGA-CV-A461-01 2 7023518 7023518 C A RSAD2 Missense_Mutation p.N121K 0.18 deleterious(0) probably_damaging(0.983) TCGA-CV-A461-01 2 71709054 71709054 G T DYSF Nonsense_Mutation p.E65* 0.29 TCGA-CV-A461-01 2 74454651 74454651 A C SLC4A5 Missense_Mutation p.L986R 0.17 tolerated_low_confidence(0.45) benign(0) TCGA-CV-A461-01 2 79314679 79314679 G T REG1B Missense_Mutation p.S20R 0.18 tolerated(0.13) benign(0.307) TCGA-CV-A461-01 2 79384406 79384406 C A REG3A Missense_Mutation p.W158C 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 2 80529283 80529283 C A LRRTM1 3'UTR 0.24 TCGA-CV-A461-01 2 85097647 85097647 T C TRABD2A Missense_Mutation p.K124R 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-CV-A461-01 2 85782667 85782667 T C GGCX Missense_Mutation p.D222G 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 2 90198986 90198986 G T IGKV1D-12 Missense_Mutation p.Q49H 0.18 deleterious(0.02) benign(0.313) TCGA-CV-A461-01 2 90249126 90249126 C A IGKV1D-43 Missense_Mutation p.Q28K 0.19 deleterious(0) probably_damaging(0.969) TCGA-CV-A461-01 2 96799254 96799254 T C ASTL Missense_Mutation p.E122G 0.14 tolerated(0.11) possibly_damaging(0.665) TCGA-CV-A461-01 2 99012724 99012724 C A CNGA3 Missense_Mutation p.T364N 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 3 100961639 100961639 G A IMPG2 Missense_Mutation p.P972L 0.38 deleterious(0.02) benign(0.25) TCGA-CV-A461-01 3 101443507 101443507 A G CEP97 5'UTR 0.15 TCGA-CV-A461-01 3 105377969 105377969 C G CBLB Missense_Mutation p.V932L 0.19 tolerated_low_confidence(0.56) possibly_damaging(0.511) TCGA-CV-A461-01 3 107097161 107097161 C A CCDC54 Missense_Mutation p.P243T 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-CV-A461-01 3 108782068 108782068 A T MORC1 Missense_Mutation p.Y276N 0.15 deleterious(0) possibly_damaging(0.813) TCGA-CV-A461-01 3 114058212 114058212 G T ZBTB20 Silent p.I622I 0.16 TCGA-CV-A461-01 3 120365157 120365157 C T HGD Silent p.E202E 0.16 TCGA-CV-A461-01 3 126071727 126071727 C A KLF15 Silent p.S13S 0.19 TCGA-CV-A461-01 3 12660013 12660013 C T RAF1 Splice_Site p.X69_splice 0.33 TCGA-CV-A461-01 3 127388033 127388033 G C PODXL2 Missense_Mutation p.R471S 0.11 deleterious(0.02) benign(0.34) TCGA-CV-A461-01 3 130368271 130368271 C A COL6A6 Silent p.I1866I 0.14 TCGA-CV-A461-01 3 133667522 133667522 C A SLCO2A1 Missense_Mutation p.R321S 0.17 deleterious(0) benign(0.035) TCGA-CV-A461-01 3 134322426 134322426 G T KY Missense_Mutation p.Q661K 0.12 tolerated_low_confidence(0.12) benign(0.382) TCGA-CV-A461-01 3 135721181 135721181 G A PPP2R3A Missense_Mutation p.V281I 0.17 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-CV-A461-01 3 141884284 141884284 G A GK5 3'UTR 0.27 TCGA-CV-A461-01 3 142509879 142509879 T G TRPC1 Missense_Mutation p.I439S 0.20 deleterious(0) benign(0.27) TCGA-CV-A461-01 3 142740367 142740367 T C U2SURP Silent p.T274T 0.12 TCGA-CV-A461-01 3 146173113 146173113 C G PLSCR2 Missense_Mutation p.R151S 0.42 deleterious(0.03) possibly_damaging(0.767) TCGA-CV-A461-01 3 147108788 147108788 C G ZIC4 Missense_Mutation p.D362H 0.20 deleterious(0) probably_damaging(0.994) TCGA-CV-A461-01 3 147127985 147127985 C - ZIC1 Frame_Shift_Del p.E30Nfs*134 0.09 TCGA-CV-A461-01 3 148583090 148583090 G AA CPA3 5'UTR 0.20 TCGA-CV-A461-01 3 160120629 160120629 G T SMC4 Missense_Mutation p.V162F 0.16 deleterious(0) probably_damaging(0.99) TCGA-CV-A461-01 3 164704925 164704925 C A SI Splice_Site p.X1733_splice 0.17 TCGA-CV-A461-01 3 164727128 164727128 C A SI Missense_Mutation p.W1373L 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 3 178952086 178952086 T A PIK3CA Missense_Mutation p.H1047Q 0.43 tolerated(0.24) benign(0.076) TCGA-CV-A461-01 3 178968722 178968722 C - KCNMB3 Frame_Shift_Del p.T24Qfs*20 0.15 TCGA-CV-A461-01 3 179082104 179082104 A G MFN1 Missense_Mutation p.T186A 0.11 tolerated(0.34) possibly_damaging(0.507) TCGA-CV-A461-01 3 179605490 179605490 A T PEX5L Missense_Mutation p.I94K 0.20 tolerated_low_confidence(0.15) benign(0.004) TCGA-CV-A461-01 3 180372658 180372658 C A CCDC39 Silent p.G274G 0.47 TCGA-CV-A461-01 3 184429442 184429442 C - MAGEF1 Frame_Shift_Del p.G58Afs*19 0.13 TCGA-CV-A461-01 3 191179008 191179008 C A PYDC2 Missense_Mutation p.S19R 0.13 tolerated(0.09) possibly_damaging(0.709) TCGA-CV-A461-01 3 194365411 194365411 T - LSG1 Frame_Shift_Del p.Q563Rfs*4 0.17 TCGA-CV-A461-01 3 195798986 195798986 C A TFRC Nonsense_Mutation p.G158* 0.22 TCGA-CV-A461-01 3 197687095 197687095 G T LMLN Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-CV-A461-01 3 38155897 38155897 C A DLEC1 Missense_Mutation p.S1244Y 0.28 tolerated(1) benign(0.196) TCGA-CV-A461-01 3 424323 424323 G C CHL1 Missense_Mutation p.Q715H 0.32 deleterious(0.04) benign(0.005) TCGA-CV-A461-01 3 48921468 48921468 C - SLC25A20 Frame_Shift_Del p.K97Rfs*32 0.24 TCGA-CV-A461-01 3 77147171 77147171 G C ROBO2 Missense_Mutation p.R39P 0.29 deleterious(0) unknown(0) TCGA-CV-A461-01 3 8667970 8667970 C T SSUH2 Missense_Mutation p.A238T 0.38 tolerated(0.26) benign(0.034) TCGA-CV-A461-01 3 98072825 98072825 T A OR5K4 Missense_Mutation p.L43H 0.19 deleterious(0) probably_damaging(0.968) TCGA-CV-A461-01 3 98109825 98109825 C G OR5K3 Missense_Mutation p.L106V 0.15 tolerated(0.36) benign(0.009) TCGA-CV-A461-01 4 104512753 104512753 G A TACR3 Nonsense_Mutation p.Q326* 0.23 TCGA-CV-A461-01 4 108816704 108816704 G A SGMS2 5'UTR 0.23 TCGA-CV-A461-01 4 110757205 110757205 G T RRH Missense_Mutation p.G147V 0.21 tolerated(0.25) benign(0.14) TCGA-CV-A461-01 4 111431425 111431425 G C ENPEP Missense_Mutation p.D407H 0.16 deleterious(0.05) probably_damaging(0.972) TCGA-CV-A461-01 4 113436008 113436008 G A NEUROG2 Silent p.P208P 0.18 TCGA-CV-A461-01 4 114275445 114275445 T C ANK2 Missense_Mutation p.S1891P 0.24 probably_damaging(0.999) TCGA-CV-A461-01 4 115858513 115858513 A T NDST4 Silent p.P456P 0.19 TCGA-CV-A461-01 4 119948120 119948120 T A SYNPO2 Missense_Mutation p.L199Q 0.17 deleterious(0) probably_damaging(0.99) TCGA-CV-A461-01 4 126336241 126336241 G A FAT4 Silent p.L2041L 0.20 TCGA-CV-A461-01 4 147861012 147861012 C A TTC29 Silent p.P12P 0.12 TCGA-CV-A461-01 4 148575546 148575546 C A PRMT10 Missense_Mutation p.S501I 0.17 deleterious(0.01) benign(0.273) TCGA-CV-A461-01 4 155719122 155719122 C G RBM46 Missense_Mutation p.A104G 0.21 tolerated(0.11) probably_damaging(0.999) TCGA-CV-A461-01 4 156763500 156763500 G C ASIC5 Missense_Mutation p.H290D 0.26 tolerated(0.5) benign(0.02) TCGA-CV-A461-01 4 157689137 157689137 C G PDGFC Missense_Mutation p.D237H 0.14 deleterious(0) possibly_damaging(0.607) TCGA-CV-A461-01 4 158256889 158256889 T C GRIA2 Missense_Mutation p.Y445H 0.11 deleterious(0.05) possibly_damaging(0.805) TCGA-CV-A461-01 4 164394460 164394460 G T TKTL2 Missense_Mutation p.L143I 0.23 tolerated(0.24) benign(0.217) TCGA-CV-A461-01 4 16760850 16760850 T A LDB2 Missense_Mutation p.T56S 0.26 tolerated(0.41) benign(0.302) TCGA-CV-A461-01 4 170913348 170913348 C G MFAP3L Silent p.T137T 0.25 TCGA-CV-A461-01 4 175897975 175897975 T C ADAM29 Silent p.D433D 0.24 TCGA-CV-A461-01 4 177071305 177071305 G T WDR17 Missense_Mutation p.W744L 0.11 tolerated(0.74) benign(0.007) TCGA-CV-A461-01 4 177094455 177094455 A G WDR17 Missense_Mutation p.I1133M 0.22 deleterious(0.01) possibly_damaging(0.474) TCGA-CV-A461-01 4 24801457 24801457 A T SOD3 Missense_Mutation p.E105V 0.16 tolerated(0.09) benign(0.201) TCGA-CV-A461-01 4 2661771 2661771 G A FAM193A Missense_Mutation p.A288T 0.26 tolerated(0.23) probably_damaging(0.991) TCGA-CV-A461-01 4 30723990 30723990 G T PCDH7 Missense_Mutation p.D316Y 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-CV-A461-01 4 39507278 39507278 T A UGDH Missense_Mutation p.I333F 0.19 tolerated(0.27) possibly_damaging(0.804) TCGA-CV-A461-01 4 4190672 4190672 C A OTOP1 Missense_Mutation p.R566L 0.11 deleterious(0.02) benign(0.293) TCGA-CV-A461-01 4 42403267 42403267 C G SHISA3 Silent p.G172G 0.22 TCGA-CV-A461-01 4 46053585 46053585 A T GABRG1 Nonsense_Mutation p.Y329* 0.29 TCGA-CV-A461-01 4 46930548 46930548 A C GABRA4 Silent p.S453S 0.13 TCGA-CV-A461-01 4 47322160 47322160 G T GABRB1 Missense_Mutation p.A160S 0.20 tolerated(0.11) probably_damaging(0.922) TCGA-CV-A461-01 4 47405444 47405444 G A GABRB1 Missense_Mutation p.M218I 0.21 tolerated(0.15) benign(0.023) TCGA-CV-A461-01 4 47538840 47538840 G A ATP10D Silent p.E427E 0.16 TCGA-CV-A461-01 4 47938356 47938356 T G CNGA1 3'UTR 0.24 TCGA-CV-A461-01 4 48379990 48379990 A C SLAIN2 Missense_Mutation p.S206R 0.20 deleterious(0) probably_damaging(0.994) TCGA-CV-A461-01 4 48490599 48490599 T A SLC10A4 Silent p.A319A 0.22 TCGA-CV-A461-01 4 55156535 55156535 G A PDGFRA Missense_Mutation p.R979H 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-CV-A461-01 4 5527209 5527209 G C C4orf6 Missense_Mutation p.R51T 0.23 benign(0.402) TCGA-CV-A461-01 4 55964424 55964424 G T KDR Missense_Mutation p.L797M 0.18 tolerated(0.15) possibly_damaging(0.601) TCGA-CV-A461-01 4 56212587 56212587 G A SRD5A3 Silent p.L28L 0.30 TCGA-CV-A461-01 4 57514899 57514899 G A HOPX 3'UTR 0.16 TCGA-CV-A461-01 4 57891562 57891563 - T POLR2B Frame_Shift_Ins p.G1034Wfs*24 0.19 TCGA-CV-A461-01 4 65188508 65188508 C G TECRL Missense_Mutation p.G112R 0.17 deleterious(0.03) possibly_damaging(0.864) TCGA-CV-A461-01 4 66201718 66201718 T A EPHA5 Silent p.I928I 0.23 TCGA-CV-A461-01 4 70361130 70361130 T C UGT2B4 Silent p.A150A 0.20 TCGA-CV-A461-01 4 75178999 75178999 A T EPGN Intron 0.27 TCGA-CV-A461-01 4 85617191 85617191 T C WDFY3 Missense_Mutation p.I2945V 0.22 deleterious(0) possibly_damaging(0.888) TCGA-CV-A461-01 4 88116485 88116485 G A KLHL8 Silent p.V69V 0.26 TCGA-CV-A461-01 4 89345806 89345806 G T HERC6 Silent p.S629S 0.19 TCGA-CV-A461-01 5 112903465 112903465 G A YTHDC2 Missense_Mutation p.V1055M 0.24 deleterious(0.02) probably_damaging(0.985) TCGA-CV-A461-01 5 114499398 114499398 G T TRIM36 Missense_Mutation p.L39M 0.22 tolerated(0.77) probably_damaging(1) TCGA-CV-A461-01 5 122930782 122930782 A G CSNK1G3 Missense_Mutation p.H379R 0.25 tolerated(0.31) benign(0.005) TCGA-CV-A461-01 5 127623023 127623023 C A FBN2 Missense_Mutation p.R2286M 0.18 deleterious(0) probably_damaging(0.997) TCGA-CV-A461-01 5 127654601 127654601 C A FBN2 Nonsense_Mutation p.E1522* 0.29 TCGA-CV-A461-01 5 128301822 128301822 G T SLC27A6 5'UTR 0.15 TCGA-CV-A461-01 5 137451306 137451306 A G NME5 3'UTR 0.12 TCGA-CV-A461-01 5 13753572 13753572 T G DNAH5 Missense_Mutation p.K3548Q 0.17 possibly_damaging(0.728) TCGA-CV-A461-01 5 13922337 13922337 C A DNAH5 Missense_Mutation p.S180I 0.19 benign(0.403) TCGA-CV-A461-01 5 13931227 13931227 C T DNAH5 Missense_Mutation p.G62R 0.23 probably_damaging(0.953) TCGA-CV-A461-01 5 140189135 140189135 C G PCDHA4 Missense_Mutation p.T788R 0.17 tolerated_low_confidence(0.58) benign(0) TCGA-CV-A461-01 5 140222519 140222519 G A PCDHA8 Missense_Mutation p.R538H 0.22 deleterious_low_confidence(0.01) benign(0.152) TCGA-CV-A461-01 5 140307994 140307994 C T PCDHAC1 Missense_Mutation p.A506V 0.18 tolerated(0.35) benign(0.007) TCGA-CV-A461-01 5 140579453 140579453 G A PCDHB11 Missense_Mutation p.A36T 0.19 tolerated_low_confidence(0.37) benign(0.021) TCGA-CV-A461-01 5 140604402 140604402 C G PCDHB14 Missense_Mutation p.S442C 0.22 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CV-A461-01 5 140615346 140615347 - C PCDHB18 RNA 0.23 TCGA-CV-A461-01 5 140615771 140615771 G A PCDHB18 RNA 0.15 TCGA-CV-A461-01 5 140710666 140710666 G A PCDHGA1 Missense_Mutation p.E139K 0.24 tolerated_low_confidence(0.14) benign(0.119) TCGA-CV-A461-01 5 140773275 140773275 G A PCDHGA8 Missense_Mutation p.G299R 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-A461-01 5 140774565 140774565 G T PCDHGA8 Missense_Mutation p.G729C 0.19 deleterious_low_confidence(0) benign(0.144) TCGA-CV-A461-01 5 148386556 148386556 C A SH3TC2 Missense_Mutation p.C1188F 0.24 tolerated(0.37) possibly_damaging(0.74) TCGA-CV-A461-01 5 151775032 151775032 G A NMUR2 Missense_Mutation p.H309Y 0.12 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 5 156729888 156729888 G T CYFIP2 Missense_Mutation p.R193M 0.25 deleterious(0.01) benign(0.195) TCGA-CV-A461-01 5 156918648 156918648 G C ADAM19 Missense_Mutation p.I690M 0.14 tolerated(0.07) benign(0.155) TCGA-CV-A461-01 5 158588497 158588497 C G RNF145 Missense_Mutation p.C498S 0.18 tolerated(0.13) benign(0.241) TCGA-CV-A461-01 5 162891728 162891728 G A HMMR Splice_Site p.X49_splice 0.26 TCGA-CV-A461-01 5 168201351 168201351 C G SLIT3 Missense_Mutation p.R395P 0.23 deleterious(0.02) probably_damaging(1) TCGA-CV-A461-01 5 169805870 169805870 T A KCNMB1 Silent p.A138A 0.20 TCGA-CV-A461-01 5 173531322 173531323 - A NSG2 Frame_Shift_Ins p.E103Rfs*6 0.16 TCGA-CV-A461-01 5 17354268 17354268 G T CTD-2139B15.2 RNA 0.26 TCGA-CV-A461-01 5 176638343 176638344 - G NSD1 Frame_Shift_Ins p.D984* 0.18 TCGA-CV-A461-01 5 176694686 176694686 G - NSD1 Frame_Shift_Del p.E1758Rfs*5 0.20 TCGA-CV-A461-01 5 179291042 179291042 G T TBC1D9B Silent p.T1053T 0.15 TCGA-CV-A461-01 5 179976992 179976992 G A CNOT6 Silent p.L58L 0.21 TCGA-CV-A461-01 5 180477136 180477136 G A BTNL9 Missense_Mutation p.G168D 0.22 deleterious(0.02) benign(0.179) TCGA-CV-A461-01 5 22078822 22078822 C T CDH12 5'UTR 0.27 TCGA-CV-A461-01 5 23524588 23524588 G A PRDM9 Missense_Mutation p.G366S 0.24 deleterious(0) benign(0.004) TCGA-CV-A461-01 5 31449514 31449514 G T DROSHA Missense_Mutation p.H899N 0.29 deleterious(0) probably_damaging(0.992) TCGA-CV-A461-01 5 33891982 33891982 G T ADAMTS12 5'UTR 0.24 TCGA-CV-A461-01 5 38370502 38370502 G T EGFLAM Missense_Mutation p.R217M 0.14 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-CV-A461-01 5 40681879 40681879 C A PTGER4 Missense_Mutation p.R262S 0.20 deleterious(0) benign(0.24) TCGA-CV-A461-01 5 40979957 40979957 C A C7 Missense_Mutation p.P766T 0.12 deleterious(0.01) benign(0.224) TCGA-CV-A461-01 5 40999783 40999783 G A MROH2B Silent p.L1527L 0.20 TCGA-CV-A461-01 5 50091026 50091026 G A PARP8 Silent p.L401L 0.26 TCGA-CV-A461-01 5 50117120 50117120 A T PARP8 Missense_Mutation p.Y581F 0.17 tolerated(0.22) benign(0.442) TCGA-CV-A461-01 5 5235208 5235208 T C ADAMTS16 Silent p.S644S 0.20 TCGA-CV-A461-01 5 5318252 5318252 G T ADAMTS16 Silent p.T1139T 0.24 TCGA-CV-A461-01 5 55212555 55212555 G T IL31RA Missense_Mutation p.K634N 0.16 tolerated(0.27) possibly_damaging(0.895) TCGA-CV-A461-01 5 64020198 64020198 G T SREK1IP1 3'UTR 0.18 TCGA-CV-A461-01 5 75490835 75490835 C A SV2C Nonsense_Mutation p.C224* 0.18 TCGA-CV-A461-01 5 7626343 7626343 A T ADCY2 Missense_Mutation p.M212L 0.19 tolerated(0.09) benign(0.067) TCGA-CV-A461-01 5 76332480 76332480 G C AGGF1 Missense_Mutation p.G206R 0.22 deleterious(0) possibly_damaging(0.814) TCGA-CV-A461-01 5 77805896 77805896 C G LHFPL2 Silent p.A47A 0.17 TCGA-CV-A461-01 5 80809485 80809485 C G SSBP2 Missense_Mutation p.G112R 0.21 deleterious(0.02) benign(0.033) TCGA-CV-A461-01 5 878528 878528 C G BRD9 Missense_Mutation p.E405Q 0.14 deleterious(0.03) possibly_damaging(0.759) TCGA-CV-A461-01 5 89990323 89990323 A G GPR98 Missense_Mutation p.N2584D 0.19 benign(0.007) TCGA-CV-A461-01 5 9629169 9629169 G T TAS2R1 3'UTR 0.31 TCGA-CV-A461-01 5 99921984 99921984 G A FAM174A 3'UTR 0.16 TCGA-CV-A461-01 6 100841583 100841583 C A SIM1 Silent p.A450A 0.38 TCGA-CV-A461-01 6 102483440 102483440 G T GRIK2 Missense_Mutation p.M770I 0.52 tolerated(0.66) benign(0.003) TCGA-CV-A461-01 6 105406081 105406081 C A LIN28B Missense_Mutation p.R40S 0.45 tolerated(0.11) probably_damaging(0.93) TCGA-CV-A461-01 6 121563410 121563410 T A TBC1D32 Missense_Mutation p.Q698H 0.26 tolerated(0.23) benign(0.065) TCGA-CV-A461-01 6 127797101 127797101 C T SOGA3 Silent p.A690A 0.38 TCGA-CV-A461-01 6 129837451 129837451 G A LAMA2 Missense_Mutation p.E3110K 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A461-01 6 133846196 133846196 T C EYA4 Intron 0.20 TCGA-CV-A461-01 6 142711416 142711416 C T GPR126 Missense_Mutation p.S415F 0.45 deleterious(0.04) benign(0.043) TCGA-CV-A461-01 6 151939269 151939269 A G CCDC170 Missense_Mutation p.Q712R 0.18 tolerated(0.1) benign(0.076) TCGA-CV-A461-01 6 153078288 153078288 T A VIP 3'UTR 0.45 TCGA-CV-A461-01 6 160977161 160977161 A T LPA Missense_Mutation p.S1623R 0.22 tolerated(0.09) probably_damaging(0.998) TCGA-CV-A461-01 6 161007653 161007653 G C LPA Silent p.T1319T 0.38 TCGA-CV-A461-01 6 163735916 163735916 T A PACRG Nonsense_Mutation p.L263* 0.19 TCGA-CV-A461-01 6 166873037 166873037 C G RPS6KA2 Silent p.T333T 0.22 TCGA-CV-A461-01 6 169617776 169617776 C A THBS2 3'UTR 0.19 TCGA-CV-A461-01 6 169620339 169620339 G T THBS2 Missense_Mutation p.F1155L 0.13 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 6 17790142 17790142 C A KIF13A Splice_Site p.X1075_splice 0.40 TCGA-CV-A461-01 6 24178680 24178680 C A DCDC2 Missense_Mutation p.A402S 0.26 tolerated_low_confidence(0.35) benign(0.004) TCGA-CV-A461-01 6 27419525 27419525 T C ZNF184 Missense_Mutation p.K605E 0.50 deleterious(0.02) benign(0.345) TCGA-CV-A461-01 6 29142110 29142110 C T OR2J2 Missense_Mutation p.T233I 0.47 tolerated(0.09) benign(0.192) TCGA-CV-A461-01 6 29911144 29911144 T A HLA-A Missense_Mutation p.I148N 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-A461-01 6 30585497 30585497 C T MRPS18B 5'UTR 0.38 TCGA-CV-A461-01 6 33163691 33163691 C T RXRB Silent p.L372L 0.56 TCGA-CV-A461-01 6 37623650 37623650 C A MDGA1 Silent p.T135T 0.20 TCGA-CV-A461-01 6 43488956 43488956 T A POLR1C Missense_Mutation p.V320E 0.19 tolerated(0.16) benign(0.015) TCGA-CV-A461-01 6 50683291 50683291 C A TFAP2D Missense_Mutation p.L168M 0.18 tolerated(0.08) possibly_damaging(0.86) TCGA-CV-A461-01 6 51768499 51768499 T A PKHD1 Nonsense_Mutation p.R2298* 0.22 TCGA-CV-A461-01 6 51892673 51892673 G A PKHD1 Silent p.Y1194Y 0.31 TCGA-CV-A461-01 6 53519396 53519396 T C KLHL31 Silent p.L225L 0.19 TCGA-CV-A461-01 6 57048775 57048775 A G BAG2 Silent p.A141A 0.18 TCGA-CV-A461-01 6 70840116 70840116 G A COL19A1 Splice_Site p.X461_splice 0.22 TCGA-CV-A461-01 7 100451998 100451998 T C SLC12A9 Missense_Mutation p.I60T 0.23 tolerated(0.2) benign(0.159) TCGA-CV-A461-01 7 101266281 101266281 C A MYL10 Silent p.A115A 0.21 TCGA-CV-A461-01 7 11676005 11676005 C A THSD7A Silent p.G258G 0.21 TCGA-CV-A461-01 7 117450912 117450912 G C CTTNBP2 Silent p.P107P 0.22 TCGA-CV-A461-01 7 121943707 121943707 C A FEZF1 Missense_Mutation p.C262F 0.20 deleterious(0) benign(0.006) TCGA-CV-A461-01 7 126883063 126883063 C A GRM8 Nonsense_Mutation p.E66* 0.37 TCGA-CV-A461-01 7 127013772 127013772 C G ZNF800 Missense_Mutation p.V540L 0.23 deleterious(0.03) possibly_damaging(0.86) TCGA-CV-A461-01 7 131913158 131913158 C A PLXNA4 Missense_Mutation p.V559F 0.12 deleterious(0) probably_damaging(0.998) TCGA-CV-A461-01 7 137613070 137613070 C A CREB3L2 Missense_Mutation p.G49C 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 7 140449176 140449176 A T BRAF Missense_Mutation p.F635I 0.17 deleterious(0) probably_damaging(0.987) TCGA-CV-A461-01 7 141420826 141420826 C T WEE2 Missense_Mutation p.H284Y 0.17 tolerated(0.1) benign(0.047) TCGA-CV-A461-01 7 142231637 142231637 G A TRBV10-1 Missense_Mutation p.P94S 0.23 tolerated(0.31) benign(0.026) TCGA-CV-A461-01 7 142423395 142423395 C - TRBV27 Frame_Shift_Del p.L19Wfs*5 0.12 TCGA-CV-A461-01 7 143175436 143175436 A G TAS2R41 Silent p.Q157Q 0.26 TCGA-CV-A461-01 7 143657178 143657178 G A OR2F1 Missense_Mutation p.V39M 0.15 tolerated(0.08) benign(0.016) TCGA-CV-A461-01 7 143793017 143793017 C A OR2A12 Missense_Mutation p.L273I 0.25 tolerated(0.14) benign(0.122) TCGA-CV-A461-01 7 150776769 150776769 T G FASTK Missense_Mutation p.K108T 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CV-A461-01 7 151960216 151960216 C A KMT2C Splice_Site p.X395_splice 0.24 TCGA-CV-A461-01 7 158829530 158829530 G T VIPR2 Missense_Mutation p.L221M 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 7 18705910 18705910 G T HDAC9 Silent p.G514G 0.21 TCGA-CV-A461-01 7 20744406 20744406 C A ABCB5 Silent p.A799A 0.20 TCGA-CV-A461-01 7 3658737 3658737 G T SDK1 Silent p.T108T 0.24 TCGA-CV-A461-01 7 51097257 51097257 G T COBL Missense_Mutation p.S512R 0.20 deleterious(0.04) possibly_damaging(0.901) TCGA-CV-A461-01 7 56174112 56174112 G A CHCHD2 5'UTR 0.19 TCGA-CV-A461-01 7 63726662 63726662 C - ZNF679 Frame_Shift_Del p.C217Wfs*128 0.14 TCGA-CV-A461-01 7 70255882 70255883 - G AUTS2 Frame_Shift_Ins p.R1230Pfs*52 0.16 TCGA-CV-A461-01 7 73118813 73118813 G C STX1A Intron 0.32 TCGA-CV-A461-01 7 76797071 76797071 C A CCDC146 Missense_Mutation p.P29H 0.08 deleterious(0) probably_damaging(0.992) TCGA-CV-A461-01 7 79828564 79828564 G T GNAI1 Silent p.V109V 0.23 TCGA-CV-A461-01 7 80303408 80303408 T A CD36 Missense_Mutation p.M455K 0.18 deleterious(0) benign(0.315) TCGA-CV-A461-01 7 81589061 81589061 T C CACNA2D1 Silent p.R1017R 0.20 TCGA-CV-A461-01 7 84649575 84649575 C A SEMA3D Missense_Mutation p.V493L 0.21 tolerated(1) benign(0.083) TCGA-CV-A461-01 7 87083894 87083894 A - ABCB4 Frame_Shift_Del p.S101Rfs*3 0.14 TCGA-CV-A461-01 7 87912010 87912010 C A STEAP4 Silent p.V310V 0.15 TCGA-CV-A461-01 7 90225897 90225897 G T AC002456.2 5'Flank 0.43 TCGA-CV-A461-01 7 94539374 94539374 G C PPP1R9A 5'UTR 0.21 TCGA-CV-A461-01 7 94540233 94540233 G T PPP1R9A Missense_Mutation p.D270Y 0.19 deleterious(0) possibly_damaging(0.847) TCGA-CV-A461-01 7 98608777 98608777 A T TRRAP Missense_Mutation p.T3667S 0.32 benign(0.4) TCGA-CV-A461-01 7 99226830 99226830 A T ZSCAN25 Missense_Mutation p.E274D 0.18 tolerated(0.4) benign(0.004) TCGA-CV-A461-01 8 113326250 113326250 G T CSMD3 Silent p.S2527S 0.19 TCGA-CV-A461-01 8 120633726 120633726 C T ENPP2 Missense_Mutation p.G109E 0.15 deleterious(0) probably_damaging(0.945) TCGA-CV-A461-01 8 120865319 120865319 C T DSCC1 Missense_Mutation p.E107K 0.20 tolerated(0.23) benign(0.1) TCGA-CV-A461-01 8 120977482 120977482 C T DEPTOR Missense_Mutation p.P146S 0.14 tolerated(0.89) benign(0.002) TCGA-CV-A461-01 8 121357678 121357678 T G COL14A1 Silent p.T1651T 0.19 TCGA-CV-A461-01 8 125072757 125072757 T A FER1L6 Intron 0.30 TCGA-CV-A461-01 8 139631730 139631730 G T COL22A1 Missense_Mutation p.L1265I 0.32 unknown(0) TCGA-CV-A461-01 8 139701189 139701189 G T COL22A1 Missense_Mutation p.P945T 0.19 unknown(0) TCGA-CV-A461-01 8 139768059 139768059 G A COL22A1 Missense_Mutation p.P639L 0.10 unknown(0) TCGA-CV-A461-01 8 139790650 139790650 C A COL22A1 Splice_Site p.X569_splice 0.16 TCGA-CV-A461-01 8 143425643 143425643 G A TSNARE1 Silent p.H143H 0.19 TCGA-CV-A461-01 8 143566046 143566046 G T BAI1 Silent p.R743R 0.35 TCGA-CV-A461-01 8 143603354 143603354 T C BAI1 Missense_Mutation p.L1018P 0.52 deleterious(0) benign(0) TCGA-CV-A461-01 8 19190565 19190565 G T SH2D4A Missense_Mutation p.C94F 0.20 deleterious(0) probably_damaging(0.943) TCGA-CV-A461-01 8 20112403 20112403 T A LZTS1 Missense_Mutation p.D97V 0.19 deleterious(0.01) possibly_damaging(0.488) TCGA-CV-A461-01 8 2033444 2033444 C A MYOM2 Silent p.I522I 0.21 TCGA-CV-A461-01 8 24771446 24771446 C - NEFM Frame_Shift_Del p.V48Cfs*61 0.19 TCGA-CV-A461-01 8 32505844 32505844 C A NRG1 Intron 0.27 TCGA-CV-A461-01 8 38103811 38103811 G T DDHD2 Missense_Mutation p.S373I 0.20 tolerated(0.08) benign(0.11) TCGA-CV-A461-01 8 48761984 48761984 C T PRKDC Silent p.V2361V 0.18 TCGA-CV-A461-01 8 56436204 56436204 A - XKR4 Frame_Shift_Del p.F458Sfs*6 0.19 TCGA-CV-A461-01 8 61757439 61757439 G C CHD7 Missense_Mutation p.D1623H 0.16 probably_damaging(0.98) TCGA-CV-A461-01 8 68346361 68346361 C T CPA6 Missense_Mutation p.R318K 0.28 tolerated(1) benign(0.006) TCGA-CV-A461-01 8 6913049 6913049 G A DEFA5 Silent p.A63A 0.29 TCGA-CV-A461-01 8 70980501 70980501 T A PRDM14 Missense_Mutation p.E292D 0.30 tolerated(0.18) probably_damaging(0.994) TCGA-CV-A461-01 8 72973952 72973952 G T TRPA1 Silent p.A284A 0.31 TCGA-CV-A461-01 8 7308682 7308682 C A SPAG11B Intron 0.19 TCGA-CV-A461-01 8 81897092 81897092 C A PAG1 Silent p.L265L 0.27 TCGA-CV-A461-01 8 88885106 88885106 C A DCAF4L2 Missense_Mutation p.S365I 0.33 deleterious(0) possibly_damaging(0.852) TCGA-CV-A461-01 8 91029485 91029485 G A DECR1 Missense_Mutation p.G68D 0.30 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 9 111617225 111617225 G A ACTL7B Missense_Mutation p.T329M 0.05 tolerated(0.08) possibly_damaging(0.515) TCGA-CV-A461-01 9 111976076 111976076 G T EPB41L4B Silent p.A552A 0.22 TCGA-CV-A461-01 9 111979251 111979251 G A EPB41L4B Silent p.N528N 0.25 TCGA-CV-A461-01 9 112172685 112172685 C A PTPN3 Nonsense_Mutation p.E442* 0.35 TCGA-CV-A461-01 9 116931743 116931743 G T COL27A1 Silent p.P636P 0.18 TCGA-CV-A461-01 9 121930286 121930286 G T BRINP1 Nonsense_Mutation p.Y454* 0.31 TCGA-CV-A461-01 9 122011312 122011312 G C BRINP1 Missense_Mutation p.P112R 0.34 deleterious(0) benign(0.428) TCGA-CV-A461-01 9 126132737 126132737 C T CRB2 Silent p.L469L 0.24 TCGA-CV-A461-01 9 130493459 130493459 C A TTC16 Silent p.L799L 0.13 TCGA-CV-A461-01 9 134351501 134351501 G T PRRC2B Nonsense_Mutation p.E1329* 0.24 TCGA-CV-A461-01 9 139275783 139275783 C T SNAPC4 Silent p.L793L 0.34 TCGA-CV-A461-01 9 139286432 139286432 C A SNAPC4 Missense_Mutation p.G313C 0.14 deleterious(0) probably_damaging(0.998) TCGA-CV-A461-01 9 15214244 15214244 T C TTC39B Silent p.S125S 0.31 TCGA-CV-A461-01 9 21166099 21166099 G A IFNA21 Silent p.I171I 0.36 TCGA-CV-A461-01 9 32634231 32634231 A T TAF1L Silent p.G449G 0.34 TCGA-CV-A461-01 9 72131980 72131980 G A APBA1 Silent p.G49G 0.21 TCGA-CV-A461-01 9 73457962 73457962 G T TRPM3 Missense_Mutation p.P253H 0.32 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 9 78953339 78953339 C T PCSK5 Missense_Mutation p.H1621Y 0.19 deleterious(0.02) benign(0.02) TCGA-CV-A461-01 9 78953340 78953340 A C PCSK5 Missense_Mutation p.H1621P 0.19 deleterious(0.02) possibly_damaging(0.851) TCGA-CV-A461-01 9 79321897 79321897 C A PRUNE2 Missense_Mutation p.D1765Y 0.17 deleterious(0) probably_damaging(0.935) TCGA-CV-A461-01 9 79952206 79952206 A C VPS13A Missense_Mutation p.Y2044S 0.23 tolerated(0.16) possibly_damaging(0.866) TCGA-CV-A461-01 9 90252865 90252865 G T DAPK1 Missense_Mutation p.G98C 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 9 90501441 90501441 C A SPATA31E1 Missense_Mutation p.P680H 0.28 deleterious(0.02) benign(0.135) TCGA-CV-A461-01 9 90503659 90503659 G T SPATA31E1 Missense_Mutation p.R1419S 0.23 tolerated(0.55) possibly_damaging(0.858) TCGA-CV-A461-01 9 94973034 94973034 T C IARS 3'UTR 0.20 TCGA-CV-A461-01 9 97063150 97063150 G T ZNF169 Missense_Mutation p.R437L 0.33 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 9 97717497 97717497 G A C9orf3 Missense_Mutation p.G567E 0.11 deleterious(0.01) probably_damaging(0.967) TCGA-CV-A461-01 9 990511 990511 T - DMRT3 Frame_Shift_Del p.S309Pfs*10 0.16 TCGA-CV-A461-01 9 99285990 99285990 C A CDC14B Missense_Mutation p.G322C 0.29 deleterious(0) probably_damaging(1) TCGA-CV-A461-01 9 99285991 99285991 C A CDC14B Silent p.T321T 0.26 TCGA-CV-A461-01 X 100492623 100492623 C A DRP2 Silent p.A99A 0.11 TCGA-CV-A461-01 X 101098107 101098107 G T NXF5 5'UTR 0.29 TCGA-CV-A461-01 X 107923960 107923960 C T COL4A5 Missense_Mutation p.P1332S 0.43 benign(0.188) TCGA-CV-A461-01 X 112022393 112022393 C G AMOT Missense_Mutation p.A997P 0.39 unknown(0) TCGA-CV-A461-01 X 117727280 117727280 A C DOCK11 Missense_Mutation p.Q748P 0.45 deleterious(0.01) benign(0.197) TCGA-CV-A461-01 X 125686073 125686073 G C DCAF12L1 Missense_Mutation p.S173R 0.40 deleterious(0) probably_damaging(0.999) TCGA-CV-A461-01 X 128724193 128724193 C T OCRL Silent p.R884R 0.42 TCGA-CV-A461-01 X 135431833 135431833 T A GPR112 Missense_Mutation p.S1990T 0.36 tolerated(0.26) benign(0.104) TCGA-CV-A461-01 X 140994339 140994339 C A MAGEC1 Silent p.S383S 0.30 TCGA-CV-A461-01 X 142718630 142718630 C T SLITRK4 Missense_Mutation p.E99K 0.39 tolerated(0.2) probably_damaging(0.98) TCGA-CV-A461-01 X 147030418 147030418 A T FMR1 3'UTR 0.48 TCGA-CV-A461-01 X 151303039 151303039 T A MAGEA10 Missense_Mutation p.T352S 0.45 tolerated(0.32) benign(0.003) TCGA-CV-A461-01 X 151935917 151935917 A T MAGEA3 Missense_Mutation p.Y84N 0.49 tolerated(0.56) benign(0.001) TCGA-CV-A461-01 X 151935918 151935918 G T MAGEA3 Silent p.S83S 0.49 TCGA-CV-A461-01 X 15619008 15619008 G A ACE2 Silent p.L9L 0.37 TCGA-CV-A461-01 X 27998283 27998283 G T DCAF8L1 Missense_Mutation p.P390Q 0.47 tolerated(0.14) benign(0.017) TCGA-CV-A461-01 X 29973894 29973894 C T IL1RAPL1 Missense_Mutation p.P683L 0.48 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-A461-01 X 32398774 32398774 C A DMD Missense_Mutation p.L1566F 0.44 probably_damaging(0.943) TCGA-CV-A461-01 X 33357528 33357528 T A DMD 5'UTR 0.48 TCGA-CV-A461-01 X 34148158 34148158 C A FAM47A Missense_Mutation p.K746N 0.34 deleterious(0) probably_damaging(0.978) TCGA-CV-A461-01 X 48891649 48891649 C A TFE3 Nonsense_Mutation p.E335* 0.52 TCGA-CV-A461-01 X 57021177 57021177 C - SPIN3 Frame_Shift_Del p.W68* 0.29 TCGA-CV-A461-01 X 65390434 65390434 T C HEPH Missense_Mutation p.W62R 0.50 deleterious(0.04) possibly_damaging(0.553) TCGA-CV-A461-01 X 70523727 70523727 G T ITGB1BP2 Missense_Mutation p.G202V 0.39 deleterious(0.01) probably_damaging(1) TCGA-CV-A461-01 X 73065586 73065586 T A XIST RNA 0.40 TCGA-CV-A461-01 X 82763283 82763283 G A POU3F4 5'UTR 0.32 TCGA-CV-A461-01 X 86873048 86873048 C T KLHL4 Missense_Mutation p.P281S 0.40 deleterious(0.02) possibly_damaging(0.806) TCGA-CV-A461-01 X 91132154 91132154 C A PCDH11X Silent p.T305T 0.35 TCGA-CV-A463-01 10 101715080 101715080 G C DNMBP Silent p.L717L 0.31 TCGA-CV-A463-01 10 101816775 101816775 C T CPN1 Missense_Mutation p.E336K 0.29 deleterious(0.04) benign(0.416) TCGA-CV-A463-01 10 108412183 108412183 G T SORCS1 Missense_Mutation p.A811E 0.24 deleterious(0.01) possibly_damaging(0.872) TCGA-CV-A463-01 10 108412184 108412184 C T SORCS1 Missense_Mutation p.A811T 0.25 tolerated(0.07) benign(0.251) TCGA-CV-A463-01 10 118228716 118228716 C G PNLIPRP3 Missense_Mutation p.S316C 0.10 deleterious(0) benign(0.062) TCGA-CV-A463-01 10 49379127 49379127 C T FRMPD2 Silent p.P1116P 0.40 TCGA-CV-A463-01 10 73057676 73057676 G A UNC5B Missense_Mutation p.G834D 0.20 tolerated(0.48) benign(0.01) TCGA-CV-A463-01 10 7684004 7684004 G C ITIH5 Missense_Mutation p.S62C 0.26 deleterious(0) probably_damaging(1) TCGA-CV-A463-01 10 95661327 95661327 A G SLC35G1 3'UTR 0.37 TCGA-CV-A463-01 11 108206680 108206680 A G ATM Missense_Mutation p.T2754A 0.24 tolerated(0.17) probably_damaging(0.928) TCGA-CV-A463-01 11 111749793 111749793 C T FDXACB1 Missense_Mutation p.E22K 0.23 tolerated(0.28) benign(0.016) TCGA-CV-A463-01 11 1268526 1268526 T G MUC5B Silent p.T3472T 0.28 TCGA-CV-A463-01 11 130785198 130785198 G A SNX19 Missense_Mutation p.R213C 0.33 deleterious(0.02) possibly_damaging(0.791) TCGA-CV-A463-01 11 18291440 18291440 G C SAA1 3'UTR 0.24 TCGA-CV-A463-01 11 44081461 44081461 G C ACCSL Missense_Mutation p.M566I 0.30 tolerated(0.55) benign(0.001) TCGA-CV-A463-01 11 64138162 64138162 G A RPS6KA4 Silent p.G695G 0.36 TCGA-CV-A463-01 11 65393140 65393140 C T PCNXL3 Silent p.S1051S 0.13 TCGA-CV-A463-01 11 66455760 66455760 C T SPTBN2 Missense_Mutation p.R2085Q 0.33 tolerated(0.91) benign(0.01) TCGA-CV-A463-01 11 67925460 67925460 C T SUV420H1 Missense_Mutation p.E785K 0.27 deleterious(0.01) possibly_damaging(0.69) TCGA-CV-A463-01 11 83770409 83770409 G A DLG2 Nonsense_Mutation p.R290* 0.20 TCGA-CV-A463-01 11 89424200 89424200 G C FOLH1B RNA 0.28 TCGA-CV-A463-01 11 92543142 92543142 C G FAT3 Missense_Mutation p.N3127K 0.29 possibly_damaging(0.905) TCGA-CV-A463-01 12 102542068 102542068 C T PARPBP Missense_Mutation p.H72Y 0.29 tolerated(0.6) possibly_damaging(0.742) TCGA-CV-A463-01 12 107395719 107395719 C G CRY1 Missense_Mutation p.E140Q 0.29 tolerated(0.12) probably_damaging(0.976) TCGA-CV-A463-01 12 109526161 109526161 C T ALKBH2 Silent p.A212A 0.04 TCGA-CV-A463-01 12 109895994 109895994 G A KCTD10 Intron 0.21 TCGA-CV-A463-01 12 111891606 111891606 T C ATXN2 Missense_Mutation p.H1263R 0.20 benign(0.065) TCGA-CV-A463-01 12 113629518 113629518 C T RITA1 Missense_Mutation p.R236W 0.20 deleterious(0) probably_damaging(0.984) TCGA-CV-A463-01 12 130184665 130184665 C A TMEM132D Nonsense_Mutation p.E220* 0.24 TCGA-CV-A463-01 12 1902908 1902908 G A CACNA2D4 Silent p.C1109C 0.17 TCGA-CV-A463-01 12 21918983 21918983 C A KCNJ8 Nonsense_Mutation p.E317* 0.28 TCGA-CV-A463-01 12 21919122 21919122 C T KCNJ8 Silent p.V270V 0.23 TCGA-CV-A463-01 12 248431 248431 C T IQSEC3 Silent p.C634C 0.21 TCGA-CV-A463-01 12 27064147 27064147 C T ASUN Missense_Mutation p.E637K 0.28 tolerated(0.75) benign(0.004) TCGA-CV-A463-01 12 4654955 4654955 G A RAD51AP1 Missense_Mutation p.E73K 0.26 tolerated(0.58) benign(0.003) TCGA-CV-A463-01 12 50050210 50050210 C T FMNL3 Missense_Mutation p.A288T 0.17 deleterious(0.01) possibly_damaging(0.578) TCGA-CV-A463-01 12 52400976 52400976 C T GRASP Missense_Mutation p.A58V 0.40 tolerated(0.13) benign(0.016) TCGA-CV-A463-01 12 668506 668506 C T B4GALNT3 Missense_Mutation p.S936F 0.27 deleterious(0) probably_damaging(1) TCGA-CV-A463-01 12 83250975 83250975 C T TMTC2 Silent p.V90V 0.30 TCGA-CV-A463-01 12 97112235 97112235 G T C12orf55 Missense_Mutation p.D2247Y 0.21 deleterious(0.01) benign(0.002) TCGA-CV-A463-01 13 20717311 20717311 G A GJA3 Silent p.A39A 0.29 TCGA-CV-A463-01 13 23911360 23911360 G C SACS Missense_Mutation p.L2219V 0.38 probably_damaging(0.951) TCGA-CV-A463-01 13 58208610 58208610 G T PCDH17 Nonsense_Mutation p.E644* 0.16 TCGA-CV-A463-01 13 75863124 75863124 C G TBC1D4 Missense_Mutation p.E1203D 0.23 deleterious(0.03) benign(0.165) TCGA-CV-A463-01 13 77644815 77644815 A G MYCBP2 Missense_Mutation p.M3914T 0.21 possibly_damaging(0.822) TCGA-CV-A463-01 13 84455772 84455772 G - SLITRK1 5'UTR 0.43 TCGA-CV-A463-01 14 102510384 102510384 C T DYNC1H1 Splice_Site p.X4228_splice 0.19 TCGA-CV-A463-01 14 20344899 20344899 G T OR4K2 Missense_Mutation p.S158I 0.19 tolerated(0.05) probably_damaging(0.978) TCGA-CV-A463-01 14 23445919 23445919 G A AJUBA Nonsense_Mutation p.R371* 0.21 TCGA-CV-A463-01 14 24586208 24586208 G C DCAF11 Missense_Mutation p.D80H 0.24 deleterious(0.03) probably_damaging(0.976) TCGA-CV-A463-01 14 59931024 59931024 C T GPR135 Silent p.S307S 0.19 TCGA-CV-A463-01 14 68200654 68200654 C T RDH12 3'UTR 0.18 TCGA-CV-A463-01 14 73563709 73563709 T G RBM25 Silent p.A210A 0.24 TCGA-CV-A463-01 14 75266307 75266307 T G YLPM1 Nonsense_Mutation p.L1436* 0.29 TCGA-CV-A463-01 15 23932117 23932117 G A NDN Missense_Mutation p.P83L 0.47 tolerated(0.51) benign(0.001) TCGA-CV-A463-01 15 42364056 42364056 C T PLA2G4D Missense_Mutation p.V497I 0.37 tolerated(1) benign(0.045) TCGA-CV-A463-01 15 43748855 43748855 C A TP53BP1 Nonsense_Mutation p.E651* 0.28 TCGA-CV-A463-01 15 43813678 43813678 G A MAP1A Missense_Mutation p.G3S 0.30 probably_damaging(1) TCGA-CV-A463-01 15 54542488 54542488 C T UNC13C Silent p.H1098H 0.27 TCGA-CV-A463-01 15 81605705 81605705 G T STARD5 Silent p.T178T 0.31 TCGA-CV-A463-01 15 91034630 91034630 G A IQGAP1 Missense_Mutation p.M1438I 0.11 tolerated(0.12) benign(0.008) TCGA-CV-A463-01 16 21812113 21812113 C G RRN3P1 RNA 0.21 TCGA-CV-A463-01 16 28603676 28603676 G A SULT1A2 Missense_Mutation p.S228L 0.32 deleterious(0.01) possibly_damaging(0.503) TCGA-CV-A463-01 16 4796395 4796395 G A C16orf71 Missense_Mutation p.G355S 0.19 tolerated(0.09) benign(0.198) TCGA-CV-A463-01 16 49670849 49670849 G A ZNF423 Silent p.H738H 0.31 TCGA-CV-A463-01 16 5081808 5081808 C T NAGPA Missense_Mutation p.R207H 0.26 probably_damaging(0.999) TCGA-CV-A463-01 16 55844898 55844898 C T CES1 Missense_Mutation p.E371K 0.18 tolerated(0.17) benign(0.203) TCGA-CV-A463-01 16 61760881 61760881 C T CDH8 Intron 0.37 TCGA-CV-A463-01 16 70310999 70310999 C T AARS Missense_Mutation p.R68K 0.30 deleterious(0) probably_damaging(0.996) TCGA-CV-A463-01 16 70989392 70989392 C A HYDIN Missense_Mutation p.D2068Y 0.20 probably_damaging(0.998) TCGA-CV-A463-01 16 74908238 74908238 G A WDR59 Missense_Mutation p.R932W 0.25 deleterious(0) probably_damaging(0.987) TCGA-CV-A463-01 16 79632677 79632677 C A MAF Intron 0.23 TCGA-CV-A463-01 17 16527243 16527243 G C ZNF624 Silent p.L319L 0.21 TCGA-CV-A463-01 17 27005865 27005865 G A SUPT6H Silent p.E411E 0.21 TCGA-CV-A463-01 17 2923848 2923848 G T RAP1GAP2 Silent p.L570L 0.25 TCGA-CV-A463-01 17 36868959 36868959 G A MLLT6 Missense_Mutation p.E246K 0.29 tolerated(0.09) unknown(0) TCGA-CV-A463-01 17 43045440 43045440 G C C1QL1 5'Flank 0.40 TCGA-CV-A463-01 17 4907160 4907160 C T KIF1C Silent p.I271I 0.23 TCGA-CV-A463-01 17 59821817 59821817 C T BRIP1 Missense_Mutation p.A745T 0.25 deleterious(0.02) probably_damaging(0.956) TCGA-CV-A463-01 17 685847 685847 G C RNMTL1 Missense_Mutation p.E77Q 0.23 tolerated(0.94) benign(0.003) TCGA-CV-A463-01 17 6905055 6905055 G A ALOX12 Silent p.L362L 0.18 TCGA-CV-A463-01 17 72767908 72767908 G A NAT9 Silent p.H193H 0.31 TCGA-CV-A463-01 17 73316370 73316370 T A GRB2 3'UTR 0.22 TCGA-CV-A463-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.27 deleterious(0.04) possibly_damaging(0.83) TCGA-CV-A463-01 17 76201746 76201746 C T AFMID Missense_Mutation p.T236I 0.28 deleterious(0.01) possibly_damaging(0.568) TCGA-CV-A463-01 17 80441772 80441772 G A NARF Intron 0.31 TCGA-CV-A463-01 18 12311045 12311045 C T TUBB6 Silent p.F90F 0.30 TCGA-CV-A463-01 18 21739723 21739723 C G CABYR Missense_Mutation p.P277A 0.30 deleterious(0) benign(0.196) TCGA-CV-A463-01 18 22806933 22806933 C G ZNF521 Missense_Mutation p.E317Q 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-CV-A463-01 18 24081100 24081100 T A KCTD1 Missense_Mutation p.I34F 0.16 deleterious(0) probably_damaging(0.969) TCGA-CV-A463-01 18 28666594 28666594 G C DSC2 Missense_Mutation p.S296C 0.22 deleterious(0) possibly_damaging(0.908) TCGA-CV-A463-01 18 43438676 43438676 C G EPG5 Missense_Mutation p.E2361Q 0.30 deleterious(0.05) benign(0.136) TCGA-CV-A463-01 18 48255618 48255618 G A MAPK4 Silent p.S386S 0.32 TCGA-CV-A463-01 19 17411961 17411961 C A ABHD8 Missense_Mutation p.K155N 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-A463-01 19 23316887 23316887 G A ZNF730 Silent p.A3A 0.33 TCGA-CV-A463-01 19 30934871 30934871 C T ZNF536 Silent p.L134L 0.25 TCGA-CV-A463-01 19 33353089 33353089 G A SLC7A9 Silent p.G213G 0.21 TCGA-CV-A463-01 19 36499597 36499597 G A SYNE4 5'UTR 0.23 TCGA-CV-A463-01 19 39691054 39691054 G A NCCRP1 Missense_Mutation p.R206H 0.34 tolerated(0.15) benign(0.016) TCGA-CV-A463-01 19 41455118 41455118 G T AC092071.1 3'Flank 0.27 TCGA-CV-A463-01 19 44103203 44103203 G A ZNF576 Silent p.P102P 0.29 TCGA-CV-A463-01 19 49303334 49303334 C T BCAT2 Silent p.L145L 0.15 TCGA-CV-A463-01 19 49539084 49539084 G A CGB1 Missense_Mutation p.S84F 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-CV-A463-01 19 49843427 49843427 A T CD37 Intron 0.28 TCGA-CV-A463-01 19 50861874 50861874 C T NAPSA Missense_Mutation p.R400H 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-CV-A463-01 19 51875635 51875635 G A NKG7 Missense_Mutation p.S52L 0.24 tolerated(0.13) benign(0.025) TCGA-CV-A463-01 19 57723159 57723159 G C ZNF264 Missense_Mutation p.E232Q 0.26 deleterious(0.01) probably_damaging(0.97) TCGA-CV-A463-01 19 5831884 5831884 G T FUT6 Missense_Mutation p.T232N 0.25 tolerated(0.51) benign(0.006) TCGA-CV-A463-01 19 8464939 8464939 C T RAB11B Missense_Mutation p.S78F 0.25 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CV-A463-01 19 9763749 9763749 G A ZNF562 Missense_Mutation p.T386M 0.24 deleterious(0.03) possibly_damaging(0.806) TCGA-CV-A463-01 1 110033563 110033563 G A ATXN7L2 Missense_Mutation p.E460K 0.30 tolerated(0.08) benign(0.008) TCGA-CV-A463-01 1 110034336 110034336 G A ATXN7L2 Silent p.L717L 0.15 TCGA-CV-A463-01 1 111217012 111217012 G A KCNA3 Silent p.F140F 0.24 TCGA-CV-A463-01 1 11716049 11716049 C T FBXO44 Nonsense_Mutation p.R53* 0.22 TCGA-CV-A463-01 1 12395847 12395847 G A VPS13D Nonsense_Mutation p.W2838* 0.30 TCGA-CV-A463-01 1 150300866 150300866 G A PRPF3 Missense_Mutation p.E122K 0.24 tolerated(0.57) benign(0.265) TCGA-CV-A463-01 1 150778461 150778461 C G CTSK Missense_Mutation p.G92A 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-CV-A463-01 1 152129040 152129040 C T RPTN Missense_Mutation p.D179N 0.10 deleterious(0.02) benign(0.026) TCGA-CV-A463-01 1 152328434 152328434 C T FLG2 Missense_Mutation p.E610K 0.06 unknown(0) TCGA-CV-A463-01 1 154319226 154319226 G A ATP8B2 Missense_Mutation p.R1085Q 0.25 tolerated(0.59) possibly_damaging(0.56) TCGA-CV-A463-01 1 160389070 160389070 C T VANGL2 Silent p.L157L 0.26 TCGA-CV-A463-01 1 161010637 161010637 G A USF1 Missense_Mutation p.R196W 0.34 deleterious(0) possibly_damaging(0.489) TCGA-CV-A463-01 1 16258569 16258569 C T SPEN Missense_Mutation p.P1945L 0.21 probably_damaging(0.999) TCGA-CV-A463-01 1 16332641 16332641 G T C1orf64 Missense_Mutation p.A104S 0.35 tolerated(0.08) benign(0.341) TCGA-CV-A463-01 1 168054805 168054805 G A GPR161 Silent p.I538I 0.21 TCGA-CV-A463-01 1 170927657 170927657 C T MROH9 Missense_Mutation p.S43F 0.26 tolerated(0.05) benign(0.052) TCGA-CV-A463-01 1 172414295 172414295 G A C1orf105 Missense_Mutation p.R35K 0.28 tolerated(1) benign(0.003) TCGA-CV-A463-01 1 204119045 204119045 C T ETNK2 Missense_Mutation p.E102K 0.30 tolerated(0.42) benign(0.19) TCGA-CV-A463-01 1 247013690 247013690 C T AHCTF1 Missense_Mutation p.R1882K 0.31 tolerated(0.69) benign(0.004) TCGA-CV-A463-01 1 248263621 248263621 G A OR2L13 3'UTR 0.39 TCGA-CV-A463-01 1 34383836 34383836 G A CSMD2 Missense_Mutation p.S220L 0.16 tolerated(0.39) benign(0.005) TCGA-CV-A463-01 1 35260555 35260555 C T GJA4 Silent p.D247D 0.21 TCGA-CV-A463-01 1 3680321 3680321 G A CCDC27 Missense_Mutation p.R458Q 0.28 tolerated(0.66) benign(0.041) TCGA-CV-A463-01 1 46977984 46977984 T C DMBX1 Missense_Mutation p.S318P 0.30 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-CV-A463-01 1 52882357 52882357 G T PRPF38A Nonsense_Mutation p.E312* 0.17 TCGA-CV-A463-01 1 53377397 53377397 C T ECHDC2 Missense_Mutation p.E63K 0.29 tolerated(0.49) possibly_damaging(0.472) TCGA-CV-A463-01 1 53676523 53676523 C T CPT2 Nonsense_Mutation p.Q393* 0.28 TCGA-CV-A463-01 1 60463440 60463440 A T C1orf87 Missense_Mutation p.S441T 0.40 tolerated(0.28) benign(0.366) TCGA-CV-A463-01 1 78183639 78183639 G C USP33 Missense_Mutation p.L642V 0.28 deleterious(0.02) benign(0.053) TCGA-CV-A463-01 1 92518079 92518079 C T EPHX4 Silent p.L241L 0.32 TCGA-CV-A463-01 1 92763077 92763077 C G GLMN Missense_Mutation p.E17Q 0.24 tolerated(0.34) benign(0.09) TCGA-CV-A463-01 20 34240936 34240936 G A RBM12 Missense_Mutation p.P770L 0.23 deleterious(0.01) unknown(0) TCGA-CV-A463-01 20 34505468 34505468 C T PHF20 Nonsense_Mutation p.Q630* 0.15 TCGA-CV-A463-01 20 35661180 35661180 G A RBL1 Missense_Mutation p.S757L 0.28 tolerated(0.07) benign(0.044) TCGA-CV-A463-01 20 3759999 3759999 C T SPEF1 Silent p.R74R 0.33 TCGA-CV-A463-01 20 42271216 42271216 C T IFT52 Silent p.I406I 0.27 TCGA-CV-A463-01 20 45188731 45188731 G A SLC13A3 Missense_Mutation p.A580V 0.18 deleterious(0.01) possibly_damaging(0.45) TCGA-CV-A463-01 20 61511058 61511058 C T DIDO1 Missense_Mutation p.E2084K 0.31 probably_damaging(0.99) TCGA-CV-A463-01 21 45861840 45861840 C T TRPM2 3'UTR 0.46 TCGA-CV-A463-01 21 45978005 45978005 G C KRTAP10-3 Silent p.L198L 0.18 TCGA-CV-A463-01 22 18979447 18979447 G T DGCR5 RNA 0.38 TCGA-CV-A463-01 22 19754274 19754274 C T TBX1 Missense_Mutation p.P458S 0.35 tolerated_low_confidence(0.19) benign(0.005) TCGA-CV-A463-01 22 21800952 21800952 G A HIC2 Missense_Mutation p.E590K 0.41 tolerated(0.06) possibly_damaging(0.881) TCGA-CV-A463-01 22 30722669 30722669 C G TBC1D10A Missense_Mutation p.E68Q 0.37 tolerated(0.37) benign(0.035) TCGA-CV-A463-01 22 36712573 36712573 C T MYH9 Missense_Mutation p.E457K 0.26 probably_damaging(1) TCGA-CV-A463-01 22 38565425 38565425 G A PLA2G6 Silent p.F3F 0.25 TCGA-CV-A463-01 22 43272156 43272156 C T PACSIN2 Silent p.L445L 0.21 TCGA-CV-A463-01 22 50962301 50962301 G A SCO2 Silent p.Y180Y 0.22 TCGA-CV-A463-01 2 133489544 133489544 G A NCKAP5 Missense_Mutation p.R1737C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-A463-01 2 135659511 135659511 T A ACMSD 3'UTR 0.33 TCGA-CV-A463-01 2 178762845 178762845 G A PDE11A Silent p.A414A 0.25 TCGA-CV-A463-01 2 179197667 179197667 G A OSBPL6 Missense_Mutation p.E186K 0.26 deleterious(0) probably_damaging(0.995) TCGA-CV-A463-01 2 179545893 179545893 C T TTN Missense_Mutation p.E11085K 0.30 TCGA-CV-A463-01 2 197189708 197189708 C T HECW2 Missense_Mutation p.R246Q 0.22 tolerated(0.1) possibly_damaging(0.843) TCGA-CV-A463-01 2 198949998 198949998 C T PLCL1 Missense_Mutation p.S586F 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-A463-01 2 202149751 202149751 C T CASP8 Nonsense_Mutation p.Q398* 0.28 TCGA-CV-A463-01 2 209136285 209136285 T C PIKFYVE Silent p.A14A 0.29 TCGA-CV-A463-01 2 218682865 218682865 G A TNS1 Missense_Mutation p.A1293V 0.19 tolerated(0.63) benign(0.002) TCGA-CV-A463-01 2 234681122 234681122 T C UGT1A4 Missense_Mutation p.F508L 0.35 tolerated(0.88) benign(0.32) TCGA-CV-A463-01 2 234851309 234851309 G C TRPM8 Missense_Mutation p.E206Q 0.23 tolerated(0.31) probably_damaging(0.996) TCGA-CV-A463-01 2 237172837 237172837 T C ASB18 Missense_Mutation p.N51S 0.14 deleterious(0.02) possibly_damaging(0.786) TCGA-CV-A463-01 2 240085500 240085500 C T HDAC4 Missense_Mutation p.G204R 0.19 tolerated(0.43) benign(0.034) TCGA-CV-A463-01 2 27592008 27592008 G A EIF2B4 Missense_Mutation p.R115W 0.22 deleterious(0) probably_damaging(0.986) TCGA-CV-A463-01 2 29296368 29296368 G A C2orf71 Missense_Mutation p.P254S 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A463-01 2 44201421 44201421 G A LRPPRC Silent p.L341L 0.26 TCGA-CV-A463-01 2 54155351 54155351 G A PSME4 Missense_Mutation p.S469L 0.11 tolerated(0.21) benign(0.015) TCGA-CV-A463-01 2 75196695 75196695 C G POLE4 3'UTR 0.32 TCGA-CV-A463-01 2 80136794 80136794 C T CTNNA2 Silent p.S309S 0.23 TCGA-CV-A463-01 2 89028799 89028799 C T RPIA Missense_Mutation p.R136C 0.21 deleterious(0) probably_damaging(0.973) TCGA-CV-A463-01 2 95537573 95537573 G A TEKT4 Silent p.T83T 0.21 TCGA-CV-A463-01 2 99697797 99697797 T - TSGA10 Frame_Shift_Del p.K225Nfs*69 0.23 TCGA-CV-A463-01 3 10384545 10384545 C T ATP2B2 Silent p.L936L 0.29 TCGA-CV-A463-01 3 10491287 10491287 G T ATP2B2 5'UTR 0.31 TCGA-CV-A463-01 3 119886913 119886913 C T GPR156 Missense_Mutation p.E471K 0.10 tolerated(0.55) benign(0.002) TCGA-CV-A463-01 3 121132062 121132062 G A STXBP5L Silent p.R1026R 0.29 TCGA-CV-A463-01 3 121341555 121341555 G C FBXO40 Missense_Mutation p.A427P 0.26 deleterious(0.02) probably_damaging(0.974) TCGA-CV-A463-01 3 122411357 122411357 G C PARP14 Missense_Mutation p.D189H 0.18 tolerated(0.07) benign(0.023) TCGA-CV-A463-01 3 142281947 142281947 G C ATR Missense_Mutation p.F99L 0.27 tolerated_low_confidence(0.11) probably_damaging(0.995) TCGA-CV-A463-01 3 164735626 164735626 G A SI Missense_Mutation p.R1186C 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-CV-A463-01 3 27442266 27442266 G C SLC4A7 Missense_Mutation p.L797V 0.35 deleterious(0.02) probably_damaging(0.988) TCGA-CV-A463-01 3 48456412 48456412 G A PLXNB1 Silent p.I1335I 0.34 TCGA-CV-A463-01 3 49028032 49028032 G C P4HTM Missense_Mutation p.E115Q 0.33 deleterious(0.02) probably_damaging(0.954) TCGA-CV-A463-01 3 93733462 93733462 C T STX19 Missense_Mutation p.E218K 0.27 deleterious(0) probably_damaging(0.917) TCGA-CV-A463-01 4 100237446 100237446 G A ADH1B Silent p.I91I 0.25 TCGA-CV-A463-01 4 122747062 122747062 C T BBS7 Missense_Mutation p.D701N 0.26 tolerated(0.17) benign(0.011) TCGA-CV-A463-01 4 164272649 164272649 C T NPY5R Silent p.C408C 0.33 TCGA-CV-A463-01 4 187530425 187530425 G C FAT1 Nonsense_Mutation p.S3373* 0.17 TCGA-CV-A463-01 4 187628329 187628329 G A FAT1 Nonsense_Mutation p.R885* 0.26 TCGA-CV-A463-01 4 69693207 69693207 C G UGT2B10 Missense_Mutation p.F416L 0.23 tolerated(0.32) benign(0.011) TCGA-CV-A463-01 4 87671739 87671739 C T PTPN13 Nonsense_Mutation p.R923* 0.26 TCGA-CV-A463-01 4 94376877 94376877 C T GRID2 Missense_Mutation p.T537M 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A463-01 4 96762177 96762177 G A PDHA2 Missense_Mutation p.M292I 0.23 deleterious(0.01) possibly_damaging(0.896) TCGA-CV-A463-01 4 996115 996115 C T IDUA Missense_Mutation p.A344V 0.33 tolerated(0.15) benign(0.011) TCGA-CV-A463-01 4 99982615 99982615 C G METAP1 3'UTR 0.40 TCGA-CV-A463-01 5 140590536 140590536 T A PCDHB12 Missense_Mutation p.L686H 0.70 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CV-A463-01 5 147207656 147207656 C T SPINK1 Silent p.K41K 0.09 TCGA-CV-A463-01 5 156381429 156381429 T C TIMD4 Missense_Mutation p.R133G 0.39 deleterious(0.04) possibly_damaging(0.509) TCGA-CV-A463-01 5 160114916 160114916 G A ATP10B Missense_Mutation p.H56Y 0.62 tolerated(0.21) benign(0.052) TCGA-CV-A463-01 5 176397841 176397841 G C UIMC1 Missense_Mutation p.L87V 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-A463-01 5 177022351 177022351 C T TMED9 Silent p.L214L 0.16 TCGA-CV-A463-01 5 50091150 50091150 G C PARP8 Missense_Mutation p.E443Q 0.25 deleterious_low_confidence(0.05) benign(0.179) TCGA-CV-A463-01 5 52361766 52361766 C T ITGA2 Silent p.T634T 0.59 TCGA-CV-A463-01 5 61779893 61779893 C T IPO11 Missense_Mutation p.P400S 0.08 tolerated(0.55) benign(0.01) TCGA-CV-A463-01 5 79752783 79752783 C T ZFYVE16 Missense_Mutation p.S1272F 0.64 deleterious(0) probably_damaging(0.963) TCGA-CV-A463-01 5 96238049 96238049 C G ERAP2 Nonsense_Mutation p.S607* 0.65 TCGA-CV-A463-01 6 105178206 105178206 G A HACE1 Missense_Mutation p.P867S 0.25 tolerated(0.46) benign(0.005) TCGA-CV-A463-01 6 111688459 111688459 C G REV3L Missense_Mutation p.E2178Q 0.22 tolerated(0.45) benign(0.07) TCGA-CV-A463-01 6 16327555 16327555 C T ATXN1 Silent p.E329E 0.31 TCGA-CV-A463-01 6 167754657 167754657 G A TTLL2 Silent p.E423E 0.29 TCGA-CV-A463-01 7 1015106 1015106 G A COX19 Missense_Mutation p.P14S 0.11 deleterious(0.02) probably_damaging(0.928) TCGA-CV-A463-01 7 142028415 142028415 C T TRBV6-1 Missense_Mutation p.S50F 0.44 tolerated(0.62) benign(0.005) TCGA-CV-A463-01 7 148801588 148801588 C T ZNF425 Missense_Mutation p.A459T 0.29 tolerated(0.24) benign(0.208) TCGA-CV-A463-01 7 1586596 1586596 C A TMEM184A Missense_Mutation p.D412Y 0.29 deleterious(0) probably_damaging(0.966) TCGA-CV-A463-01 7 33296955 33296955 C T BBS9 Missense_Mutation p.L184F 0.36 tolerated(0.12) possibly_damaging(0.615) TCGA-CV-A463-01 7 43908573 43908573 G A MRPS24 Missense_Mutation p.S70L 0.20 deleterious(0) probably_damaging(0.953) TCGA-CV-A463-01 7 45662327 45662327 C T ADCY1 Silent p.F335F 0.40 TCGA-CV-A463-01 7 45931564 45931564 G C IGFBP1 Missense_Mutation p.E185Q 0.30 tolerated(0.08) possibly_damaging(0.794) TCGA-CV-A463-01 7 50121408 50121408 G A ZPBP Missense_Mutation p.S99L 0.19 tolerated(0.8) benign(0.015) TCGA-CV-A463-01 7 63796700 63796700 T A ZNF736 Missense_Mutation p.S23T 0.45 tolerated(1) benign(0.014) TCGA-CV-A463-01 7 73150995 73150995 C T ABHD11 Missense_Mutation p.R281Q 0.16 tolerated(0.07) benign(0.109) TCGA-CV-A463-01 8 110413785 110413785 A C PKHD1L1 Missense_Mutation p.R447S 0.23 tolerated(0.3) benign(0.012) TCGA-CV-A463-01 8 133041368 133041368 C T OC90 Missense_Mutation p.E364K 0.29 deleterious(0.02) possibly_damaging(0.487) TCGA-CV-A463-01 8 42586979 42586979 G A CHRNB3 Missense_Mutation p.D177N 0.23 tolerated(0.07) probably_damaging(1) TCGA-CV-A463-01 8 77766424 77766424 C G ZFHX4 Missense_Mutation p.Q2423E 0.20 benign(0.086) TCGA-CV-A463-01 8 87567120 87567120 C T CPNE3 Nonsense_Mutation p.Q388* 0.30 TCGA-CV-A463-01 8 87590976 87590976 C T CNGB3 Missense_Mutation p.G682S 0.29 tolerated(0.37) benign(0.013) TCGA-CV-A463-01 8 97172596 97172596 C T GDF6 Missense_Mutation p.E109K 0.30 deleterious(0) probably_damaging(0.982) TCGA-CV-A463-01 9 101796853 101796853 C T COL15A1 Missense_Mutation p.S689L 0.16 tolerated(0.15) probably_damaging(0.987) TCGA-CV-A463-01 9 102747299 102747299 G A ERP44 Missense_Mutation p.H357Y 0.22 deleterious(0) probably_damaging(0.994) TCGA-CV-A463-01 9 125551281 125551281 C G OR5C1 Missense_Mutation p.R24G 0.25 tolerated(0.07) possibly_damaging(0.631) TCGA-CV-A463-01 9 135941933 135941933 G A CEL Silent p.R188R 0.19 TCGA-CV-A463-01 9 135947076 135947076 T C CEL Silent p.G732G 0.46 TCGA-CV-A463-01 9 136131292 136131292 C T RP11-430N14.4 5'Flank 0.21 TCGA-CV-A463-01 9 136256512 136256512 G A C9orf96 Missense_Mutation p.D175N 0.17 deleterious(0) probably_damaging(0.996) TCGA-CV-A463-01 9 139404356 139404356 C A NOTCH1 Missense_Mutation p.C933F 0.16 deleterious(0) probably_damaging(0.958) TCGA-CV-A463-01 9 139409131 139409131 C T NOTCH1 Missense_Mutation p.D680N 0.18 tolerated(0.36) benign(0.243) TCGA-CV-A463-01 9 139410015 139410015 G C NOTCH1 Missense_Mutation p.S608C 0.24 tolerated(0.16) possibly_damaging(0.489) TCGA-CV-A463-01 9 139413976 139413976 G C NOTCH1 Missense_Mutation p.P262A 0.18 tolerated(0.08) probably_damaging(0.973) TCGA-CV-A463-01 9 139747802 139747802 G A MAMDC4 Missense_Mutation p.G74S 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A463-01 9 139904519 139904519 G A ABCA2 Silent p.D2137D 0.21 TCGA-CV-A463-01 9 140115191 140115191 G A RNF208 Silent p.R158R 0.23 TCGA-CV-A463-01 9 4679816 4679816 G T CDC37L1 Nonsense_Mutation p.E17* 0.62 TCGA-CV-A463-01 9 67951986 67951986 G T ANKRD20A1 Nonsense_Mutation p.G317* 0.11 TCGA-CV-A463-01 9 73233949 73233949 G A TRPM3 Missense_Mutation p.A719V 0.11 deleterious(0) possibly_damaging(0.718) TCGA-CV-A463-01 9 91993762 91993762 C A SEMA4D Nonsense_Mutation p.E816* 0.18 TCGA-CV-A463-01 9 95887203 95887203 G A NINJ1 Missense_Mutation p.A149V 0.20 deleterious_low_confidence(0.02) probably_damaging(0.935) TCGA-CV-A463-01 9 97333759 97333759 G A FBP2 Silent p.L184L 0.25 TCGA-CV-A463-01 X 100334029 100334029 C T TMEM35 Missense_Mutation p.S13L 0.33 deleterious(0) probably_damaging(0.994) TCGA-CV-A463-01 X 107403061 107403061 C A COL4A6 Intron 0.27 TCGA-CV-A463-01 X 107403862 107403862 G A COL4A6 Silent p.P1453P 0.23 TCGA-CV-A463-01 X 139865995 139865995 C T CDR1 Nonsense_Mutation p.W179* 0.23 TCGA-CV-A463-01 X 147063165 147063165 C T FMR1NB Silent p.F81F 0.28 TCGA-CV-A463-01 X 149809804 149809804 T C MTM1 Silent p.T197T 0.21 TCGA-CV-A463-01 X 150868557 150868557 G C PRRG3 Missense_Mutation p.E33Q 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-CV-A463-01 X 152710318 152710318 C T TREX2 Missense_Mutation p.E191K 0.25 tolerated(0.06) probably_damaging(0.989) TCGA-CV-A463-01 X 152771515 152771515 C T BGN Silent p.L182L 0.36 TCGA-CV-A463-01 X 17819888 17819888 C G RAI2 Silent p.L81L 0.33 TCGA-CV-A463-01 X 18924674 18924674 G C PHKA2 Silent p.L915L 0.20 TCGA-CV-A463-01 X 19009030 19009030 G C GPR64 Silent p.L1002L 0.19 TCGA-CV-A463-01 X 24229432 24229432 G A ZFX Missense_Mutation p.R786Q 0.34 tolerated(0.05) probably_damaging(0.996) TCGA-CV-A463-01 X 29973723 29973723 G A IL1RAPL1 Missense_Mutation p.R626Q 0.33 deleterious_low_confidence(0) benign(0.342) TCGA-CV-A463-01 X 30237689 30237689 C T MAGEB2 3'UTR 0.14 TCGA-CV-A463-01 X 34149139 34149139 A C FAM47A Missense_Mutation p.S419R 0.33 tolerated(0.47) possibly_damaging(0.8) TCGA-CV-A463-01 X 34961045 34961045 C T FAM47B Missense_Mutation p.R33C 0.25 tolerated(0.12) benign(0.015) TCGA-CV-A463-01 X 41002598 41002598 C T USP9X Nonsense_Mutation p.Q406* 0.31 TCGA-CV-A463-01 X 47034420 47034420 C T RBM10 Nonsense_Mutation p.Q169* 0.13 TCGA-CV-A463-01 X 53308797 53308797 T A IQSEC2 Intron 0.32 TCGA-CV-A463-01 X 53562382 53562384 CTT - HUWE1 In_Frame_Del p.K4204del 0.38 TCGA-CV-A463-01 X 54780193 54780193 G T ITIH6 Missense_Mutation p.D1081E 0.22 deleterious(0) benign(0.392) TCGA-CV-A463-01 X 57620700 57620700 C T ZXDB Missense_Mutation p.S740L 0.26 deleterious(0) possibly_damaging(0.449) TCGA-CV-A463-01 X 79277757 79277757 C A TBX22 5'UTR 0.47 TCGA-CV-A463-01 X 83588802 83588802 C T HDX Missense_Mutation p.E597K 0.39 deleterious(0.01) benign(0.396) TCGA-CV-A464-01 10 115350393 115350393 C T NRAP Missense_Mutation p.D1634N 0.14 tolerated(0.09) probably_damaging(0.999) TCGA-CV-A464-01 10 128795024 128795024 G A DOCK1 Silent p.L162L 0.10 TCGA-CV-A464-01 11 770865 770865 G A PDDC1 3'UTR 0.20 TCGA-CV-A464-01 12 124401153 124401153 G A DNAH10 Silent p.R3506R 0.06 TCGA-CV-A464-01 12 5153702 5153702 G A KCNA5 Missense_Mutation p.R130H 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-CV-A464-01 12 80752449 80752449 A C OTOGL Splice_Site p.X2032_splice 0.10 TCGA-CV-A464-01 14 81743534 81743534 C T STON2 Silent p.L707L 0.15 TCGA-CV-A464-01 15 43713342 43713345 CGTC - TP53BP1 Frame_Shift_Del p.T1377Qfs*50 0.11 TCGA-CV-A464-01 15 50550636 50550636 G A HDC Silent p.L95L 0.19 TCGA-CV-A464-01 15 80872758 80872758 A T ARNT2 Silent p.S540S 0.12 TCGA-CV-A464-01 17 16525589 16525589 G A ZNF624 3'UTR 0.15 TCGA-CV-A464-01 17 48683311 48683311 C A CACNA1G Missense_Mutation p.T1450N 0.16 deleterious(0) probably_damaging(0.997) TCGA-CV-A464-01 17 73499946 73499946 C T CASKIN2 Missense_Mutation p.R522H 0.13 deleterious(0) probably_damaging(0.965) TCGA-CV-A464-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.08 deleterious(0) probably_damaging(1) TCGA-CV-A464-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.15 tolerated(0.11) benign(0.308) TCGA-CV-A464-01 17 78172538 78172538 C T CARD14 Intron 0.15 TCGA-CV-A464-01 1 152081457 152081457 G A TCHH Silent p.R1412R 0.18 TCGA-CV-A464-01 1 190423783 190423783 A G BRINP3 Splice_Site p.X79_splice 0.14 TCGA-CV-A464-01 1 231386814 231386814 A T GNPAT Silent p.G62G 0.13 TCGA-CV-A464-01 20 33176367 33176367 G A PIGU Silent p.I224I 0.06 TCGA-CV-A464-01 21 27852735 27852735 C T CYYR1 Missense_Mutation p.A64T 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-CV-A464-01 22 29153091 29153091 T C HSCB Silent p.I214I 0.15 TCGA-CV-A464-01 22 41738577 41738577 C T ZC3H7B Silent p.P414P 0.12 TCGA-CV-A464-01 2 219920534 219920534 G A IHH Missense_Mutation p.R211C 0.17 tolerated(0.18) possibly_damaging(0.684) TCGA-CV-A464-01 2 233839443 233839443 G T NGEF Missense_Mutation p.P53H 0.14 deleterious_low_confidence(0) benign(0) TCGA-CV-A464-01 2 39055535 39055535 C A DHX57 Missense_Mutation p.M862I 0.11 tolerated(0.06) benign(0.097) TCGA-CV-A464-01 2 74477537 74477537 T C SLC4A5 Missense_Mutation p.Y529C 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A464-01 2 99439594 99439594 C T KIAA1211L Missense_Mutation p.C381Y 0.45 tolerated(0.36) possibly_damaging(0.588) TCGA-CV-A464-01 3 129034140 129034140 C T H1FX Silent p.K202K 0.12 TCGA-CV-A464-01 6 27775552 27775552 C T HIST1H2BL Missense_Mutation p.V45M 0.11 deleterious_low_confidence(0.01) benign(0.296) TCGA-CV-A464-01 6 43608327 43608327 G A MAD2L1BP 3'UTR 0.12 TCGA-CV-A464-01 6 75866077 75866077 G A COL12A1 Missense_Mutation p.S1049L 0.09 possibly_damaging(0.558) TCGA-CV-A464-01 7 106508808 106508808 C A PIK3CG Missense_Mutation p.Q268K 0.11 tolerated(0.79) benign(0.001) TCGA-CV-A464-01 7 77230124 77230124 G T PTPN12 Splice_Site p.X232_splice 0.16 TCGA-CV-A464-01 X 119387865 119387865 T A ZBTB33 Missense_Mutation p.S199T 0.22 deleterious(0) probably_damaging(0.991) TCGA-CV-A464-01 X 153689951 153689951 G A PLXNA3 Silent p.L369L 0.25 TCGA-CV-A464-01 X 47926307 47926307 G - ZNF630 5'UTR 0.13 TCGA-CV-A464-01 Y 6911085 6911085 G T TBL1Y Silent p.G41G 0.20 TCGA-CV-A465-01 10 115368262 115368262 G A NRAP Missense_Mutation p.R1205W 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A465-01 10 15686110 15686110 C T ITGA8 Missense_Mutation p.V440M 0.11 tolerated(0.24) benign(0.004) TCGA-CV-A465-01 10 30316882 30316882 G A KIAA1462 Missense_Mutation p.T732M 0.12 tolerated(0.33) benign(0.008) TCGA-CV-A465-01 11 45891303 45891303 C T CRY2 Missense_Mutation p.R398W 0.12 deleterious(0) probably_damaging(1) TCGA-CV-A465-01 11 58207049 58207049 G A OR5B12 Silent p.I192I 0.16 TCGA-CV-A465-01 12 111158781 111158781 G T PPP1CC Intron 0.30 TCGA-CV-A465-01 12 113532922 113532922 G C DTX1 Missense_Mutation p.E488Q 0.09 deleterious(0.03) benign(0.008) TCGA-CV-A465-01 12 126137126 126137126 G T TMEM132B Missense_Mutation p.R680M 0.13 deleterious(0) probably_damaging(0.997) TCGA-CV-A465-01 12 6567843 6567843 G A TAPBPL Missense_Mutation p.E313K 0.09 tolerated(0.58) benign(0.009) TCGA-CV-A465-01 12 77421911 77421911 G A E2F7 Missense_Mutation p.S631L 0.10 tolerated(0.35) benign(0.004) TCGA-CV-A465-01 14 102471452 102471452 G T DYNC1H1 Missense_Mutation p.G1771V 0.23 benign(0.017) TCGA-CV-A465-01 15 89861842 89861842 G A POLG Missense_Mutation p.R1138C 0.09 deleterious(0) probably_damaging(0.992) TCGA-CV-A465-01 16 2580950 2580950 G A CEMP1 Missense_Mutation p.P42L 0.06 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-CV-A465-01 16 27640094 27640094 C T KIAA0556 Missense_Mutation p.R85W 0.07 deleterious(0.01) benign(0.105) TCGA-CV-A465-01 16 66613625 66613625 C G CMTM2 Missense_Mutation p.Q39E 0.09 tolerated(0.32) benign(0.092) TCGA-CV-A465-01 17 10728855 10728855 C G PIRT Missense_Mutation p.R36S 0.17 deleterious(0) probably_damaging(0.996) TCGA-CV-A465-01 17 39740038 39740038 C G KRT14 Missense_Mutation p.D301H 0.14 deleterious(0) probably_damaging(0.991) TCGA-CV-A465-01 17 5336447 5336447 C T C1QBP Missense_Mutation p.R246Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A465-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.33 deleterious(0.04) possibly_damaging(0.898) TCGA-CV-A465-01 19 15299867 15299867 C T NOTCH3 Silent p.S437S 0.11 TCGA-CV-A465-01 19 17983280 17983280 G T SLC5A5 Missense_Mutation p.G51V 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A465-01 1 149784864 149784864 T C HIST2H3D Missense_Mutation p.I125V 0.11 tolerated_low_confidence(0.08) benign(0.016) TCGA-CV-A465-01 1 151345148 151345148 G A SELENBP1 5'UTR 0.34 TCGA-CV-A465-01 1 72076802 72076802 G C NEGR1 Missense_Mutation p.S232C 0.28 deleterious(0) benign(0.263) TCGA-CV-A465-01 20 60749689 60749689 G A SS18L1 Missense_Mutation p.G385S 0.26 tolerated_low_confidence(0.16) unknown(0) TCGA-CV-A465-01 20 7921018 7921018 C G HAO1 Missense_Mutation p.V18L 0.29 tolerated(0.64) benign(0.003) TCGA-CV-A465-01 21 34132255 34132255 G T PAXBP1 Nonsense_Mutation p.Y342* 0.10 TCGA-CV-A465-01 22 32269164 32269164 G C DEPDC5 Intron 0.14 TCGA-CV-A465-01 2 145157727 145157727 G A ZEB2 Nonsense_Mutation p.R343* 0.38 TCGA-CV-A465-01 2 201800559 201800559 C T ORC2 Missense_Mutation p.D191N 0.14 tolerated(0.15) benign(0.174) TCGA-CV-A465-01 5 127522314 127522314 C G SLC12A2 Missense_Mutation p.F1210L 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-CV-A465-01 5 139189169 139189169 C T PSD2 Silent p.H48H 0.09 TCGA-CV-A465-01 5 140734776 140734776 G A PCDHGA4 Silent p.A3A 0.18 TCGA-CV-A465-01 5 75914376 75914376 G - F2RL2 Frame_Shift_Del p.S54Lfs*13 0.13 TCGA-CV-A465-01 5 89953816 89953816 G A GPR98 Silent p.T1491T 0.28 TCGA-CV-A465-01 6 13365014 13365014 G A GFOD1 Silent p.S378S 0.43 TCGA-CV-A465-01 6 43469294 43469294 C G TJAP1 Silent p.R53R 0.11 TCGA-CV-A465-01 7 151917678 151917678 C T KMT2C Silent p.V1214V 0.30 TCGA-CV-A465-01 8 145057416 145057416 C A PARP10 Missense_Mutation p.A781S 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-CV-A465-01 9 21971023 21971023 C T CDKN2A Missense_Mutation p.R112H 0.34 tolerated(0.05) benign(0.338) TCGA-CV-A465-01 X 118972412 118972412 G A UPF3B Missense_Mutation p.L309F 0.27 tolerated(0.05) probably_damaging(0.913) TCGA-CV-A465-01 X 53655770 53655771 AC - HUWE1 Frame_Shift_Del p.C349Yfs*23 0.19 TCGA-CV-A465-01 X 54014374 54014374 C T PHF8 Silent p.T614T 0.35 TCGA-CV-A468-01 10 105330722 105330722 C T NEURL1 Missense_Mutation p.A60V 0.04 tolerated(0.3) benign(0.004) TCGA-CV-A468-01 10 124396775 124396775 C T DMBT1 Missense_Mutation p.P2168S 0.09 tolerated(1) benign(0.347) TCGA-CV-A468-01 10 124797304 124797304 A G ACADSB Missense_Mutation p.T82A 0.07 tolerated(0.24) benign(0.002) TCGA-CV-A468-01 10 27539670 27539670 A T RP11-85G18.6 RNA 0.05 TCGA-CV-A468-01 10 45652382 45652382 G A RP11-445N18.7 RNA 0.10 TCGA-CV-A468-01 10 50863221 50863221 C T CHAT Missense_Mutation p.S572L 0.06 deleterious(0) probably_damaging(0.996) TCGA-CV-A468-01 10 50954859 50954859 G A OGDHL Silent p.F411F 0.09 TCGA-CV-A468-01 10 63212531 63212531 G A TMEM26 Intron 0.10 TCGA-CV-A468-01 10 64136664 64136664 G A ZNF365 Missense_Mutation p.E238K 0.04 tolerated_low_confidence(0.1) possibly_damaging(0.758) TCGA-CV-A468-01 10 70641764 70641764 C T STOX1 Missense_Mutation p.P121S 0.05 deleterious(0.04) possibly_damaging(0.888) TCGA-CV-A468-01 10 70641765 70641765 C T STOX1 Missense_Mutation p.P121L 0.05 deleterious(0.03) possibly_damaging(0.712) TCGA-CV-A468-01 10 79556324 79556324 G A DLG5 Silent p.V1731V 0.07 TCGA-CV-A468-01 10 96698526 96698526 C T CYP2C9 Silent p.L29L 0.05 TCGA-CV-A468-01 10 96698527 96698527 C T CYP2C9 Missense_Mutation p.P30S 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 11 102195384 102195384 G A BIRC3 Silent p.R48R 0.04 TCGA-CV-A468-01 11 10580570 10580570 C T LYVE1 3'UTR 0.06 TCGA-CV-A468-01 11 10648011 10648011 C T MRVI1 Silent p.K290K 0.11 TCGA-CV-A468-01 11 110477462 110477462 G A ARHGAP20 Missense_Mutation p.P263S 0.06 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 11 118516315 118516315 G A PHLDB1 Silent p.E1121E 0.06 TCGA-CV-A468-01 11 119045231 119045231 G A NLRX1 Missense_Mutation p.G307S 0.06 deleterious(0.05) probably_damaging(1) TCGA-CV-A468-01 11 124135580 124135580 C T OR8G5 Silent p.F286F 0.06 TCGA-CV-A468-01 11 124481588 124481588 C T PANX3 Missense_Mutation p.P46S 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 11 14808214 14808214 G A PDE3B Missense_Mutation p.D421N 0.06 deleterious(0.01) possibly_damaging(0.881) TCGA-CV-A468-01 11 33612861 33612861 G A KIAA1549L Missense_Mutation p.E1252K 0.09 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 11 35313888 35313888 G A SLC1A2 Missense_Mutation p.S346F 0.04 tolerated(0.23) benign(0.197) TCGA-CV-A468-01 11 5373561 5373561 G A OR51B6 Missense_Mutation p.S275N 0.05 deleterious(0.02) possibly_damaging(0.521) TCGA-CV-A468-01 11 5474918 5474918 C A OR51I2 Missense_Mutation p.S67Y 0.06 deleterious(0) probably_damaging(0.962) TCGA-CV-A468-01 11 55681906 55681906 C T OR5W2 Missense_Mutation p.M51I 0.07 tolerated(0.64) benign(0.001) TCGA-CV-A468-01 11 55703751 55703751 T C OR5I1 Missense_Mutation p.I42M 0.07 tolerated(0.31) benign(0) TCGA-CV-A468-01 11 56085945 56085945 T C OR8K3 Silent p.L55L 0.04 TCGA-CV-A468-01 11 56113937 56113937 C T OR8K1 Silent p.I141I 0.04 TCGA-CV-A468-01 11 56113974 56113974 C T OR8K1 Missense_Mutation p.P154S 0.05 tolerated_low_confidence(0.08) benign(0.271) TCGA-CV-A468-01 11 56114159 56114159 C T OR8K1 Silent p.F215F 0.06 TCGA-CV-A468-01 11 56258723 56258723 G A OR5M8 Missense_Mutation p.L42F 0.06 tolerated(0.08) possibly_damaging(0.581) TCGA-CV-A468-01 11 56258724 56258724 G A OR5M8 Silent p.N41N 0.06 TCGA-CV-A468-01 11 57176768 57176768 G A SLC43A3 Silent p.F417F 0.07 TCGA-CV-A468-01 11 59210690 59210690 C T OR5A1 Missense_Mutation p.L17F 0.07 tolerated(0.1) benign(0.106) TCGA-CV-A468-01 11 5968693 5968693 C T OR56A3 Silent p.F39F 0.08 TCGA-CV-A468-01 11 65266481 65266481 C T MALAT1 RNA 0.04 TCGA-CV-A468-01 11 65631360 65631360 C T MUS81 Silent p.F349F 0.07 TCGA-CV-A468-01 11 66276599 66276599 C T DPP3 Silent p.I697I 0.08 TCGA-CV-A468-01 11 70281216 70281216 G C CTTN Missense_Mutation p.C497S 0.06 deleterious(0) probably_damaging(0.997) TCGA-CV-A468-01 11 73020471 73020471 G A ARHGEF17 Missense_Mutation p.G263E 0.08 deleterious_low_confidence(0.01) benign(0.272) TCGA-CV-A468-01 11 76831936 76831936 G A CAPN5 Missense_Mutation p.D490N 0.05 deleterious(0.02) probably_damaging(1) TCGA-CV-A468-01 11 84028112 84028112 G A DLG2 Intron 0.06 TCGA-CV-A468-01 12 104089344 104089344 G A STAB2 Missense_Mutation p.R1131K 0.07 tolerated(0.13) possibly_damaging(0.482) TCGA-CV-A468-01 12 11506726 11506726 C T PRB1 Missense_Mutation p.G104E 0.05 deleterious_low_confidence(0.04) unknown(0) TCGA-CV-A468-01 12 30878929 30878929 G A CAPRIN2 Nonsense_Mutation p.Q626* 0.08 TCGA-CV-A468-01 12 52370217 52370217 C T ACVR1B Silent p.F146F 0.05 TCGA-CV-A468-01 12 53715145 53715145 G A AAAS Silent p.P35P 0.05 TCGA-CV-A468-01 12 53715146 53715146 G A AAAS Missense_Mutation p.P35L 0.05 tolerated(0.73) benign(0.007) TCGA-CV-A468-01 12 55863090 55863090 G A OR6C70 Missense_Mutation p.S278L 0.08 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CV-A468-01 12 59274507 59274507 G A LRIG3 Missense_Mutation p.R553W 0.06 deleterious(0.02) benign(0.149) TCGA-CV-A468-01 12 6128369 6128369 C T VWF Silent p.K1405K 0.07 TCGA-CV-A468-01 12 6457903 6457903 G A SCNN1A Missense_Mutation p.P599L 0.07 deleterious(0) probably_damaging(0.991) TCGA-CV-A468-01 12 6499948 6499948 C T LTBR Missense_Mutation p.P385S 0.05 tolerated_low_confidence(0.07) probably_damaging(0.971) TCGA-CV-A468-01 12 6692098 6692098 G A CHD4 Silent p.P1384P 0.07 TCGA-CV-A468-01 12 6777001 6777001 G A ZNF384 Missense_Mutation p.P538L 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-CV-A468-01 12 6777002 6777002 G A ZNF384 Missense_Mutation p.P538S 0.05 tolerated_low_confidence(0.07) possibly_damaging(0.641) TCGA-CV-A468-01 12 85450831 85450831 G A LRRIQ1 Missense_Mutation p.E754K 0.05 tolerated(0.51) benign(0.266) TCGA-CV-A468-01 12 91552139 91552139 G A DCN Missense_Mutation p.H158Y 0.05 deleterious(0.03) probably_damaging(0.982) TCGA-CV-A468-01 12 97087580 97087580 C T C12orf55 Silent p.I2115I 0.08 TCGA-CV-A468-01 13 21565493 21565493 G A LATS2 Silent p.A131A 0.10 TCGA-CV-A468-01 13 21565494 21565494 G A LATS2 Missense_Mutation p.A131V 0.10 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-CV-A468-01 13 32332413 32332413 G A RXFP2 Missense_Mutation p.G38D 0.05 tolerated(0.14) benign(0.002) TCGA-CV-A468-01 13 80911637 80911637 C T SPRY2 Silent p.K68K 0.07 TCGA-CV-A468-01 14 102391638 102391638 C T PPP2R5C 3'UTR 0.12 TCGA-CV-A468-01 14 102482715 102482715 C T DYNC1H1 Silent p.S2501S 0.06 TCGA-CV-A468-01 14 105411521 105411521 G A AHNAK2 Missense_Mutation p.P3423S 0.08 benign(0.217) TCGA-CV-A468-01 14 19553512 19553512 C T POTEG Silent p.F32F 0.03 TCGA-CV-A468-01 14 20403883 20403883 T G OR4K1 Missense_Mutation p.S20A 0.06 deleterious(0) probably_damaging(0.992) TCGA-CV-A468-01 14 20403884 20403884 C T OR4K1 Missense_Mutation p.S20F 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-CV-A468-01 14 20943406 20943406 C G PNP Missense_Mutation p.A216G 0.12 deleterious(0) probably_damaging(0.933) TCGA-CV-A468-01 14 21549761 21549761 C T ARHGEF40 Missense_Mutation p.P912S 0.10 tolerated(0.23) probably_damaging(0.967) TCGA-CV-A468-01 14 21798483 21798483 G A RPGRIP1 Missense_Mutation p.E1059K 0.10 tolerated(0.24) benign(0.025) TCGA-CV-A468-01 14 23863408 23863408 C T MYH6 Missense_Mutation p.A852T 0.07 deleterious(0.02) possibly_damaging(0.451) TCGA-CV-A468-01 14 23863409 23863409 C T MYH6 Missense_Mutation p.M851I 0.07 tolerated(0.11) benign(0.004) TCGA-CV-A468-01 14 24662133 24662133 G A TM9SF1 Nonsense_Mutation p.R230* 0.15 TCGA-CV-A468-01 14 24709402 24709402 G A TINF2 Intron 0.10 TCGA-CV-A468-01 14 31762743 31762743 G A RP11-596D21.1 Intron 0.13 TCGA-CV-A468-01 14 44975065 44975065 G A FSCB Missense_Mutation p.P376S 0.08 tolerated(0.12) benign(0.006) TCGA-CV-A468-01 14 50798841 50798841 C T CDKL1 Intron 0.12 TCGA-CV-A468-01 14 62536341 62536341 G A SYT16 Missense_Mutation p.E182K 0.07 deleterious(0.05) benign(0.149) TCGA-CV-A468-01 14 69799831 69799831 G A GALNT16 Missense_Mutation p.E270K 0.06 deleterious(0) probably_damaging(0.998) TCGA-CV-A468-01 14 69799833 69799833 G A GALNT16 Silent p.E270E 0.06 TCGA-CV-A468-01 14 71443988 71443988 C T PCNX Missense_Mutation p.P312S 0.12 deleterious_low_confidence(0.04) benign(0.41) TCGA-CV-A468-01 14 74180036 74180036 C T PNMA1 Missense_Mutation p.E103K 0.09 tolerated(0.21) benign(0.01) TCGA-CV-A468-01 14 88899482 88899482 A G SPATA7 Silent p.E362E 0.06 TCGA-CV-A468-01 14 91929184 91929184 T G SMEK1 Missense_Mutation p.N610T 0.10 tolerated(0.11) probably_damaging(0.979) TCGA-CV-A468-01 15 23811287 23811287 G A MKRN3 Missense_Mutation p.D120N 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 15 25221514 25221514 G A SNRPN Missense_Mutation p.R73H 0.09 tolerated(0.06) benign(0.274) TCGA-CV-A468-01 15 28375381 28375381 G A HERC2 Nonsense_Mutation p.Q4244* 0.04 TCGA-CV-A468-01 15 48056928 48056928 C T SEMA6D Silent p.P397P 0.07 TCGA-CV-A468-01 15 64716267 64716267 C T TRIP4 Nonsense_Mutation p.R466* 0.09 TCGA-CV-A468-01 15 72020966 72020966 G A THSD4 Missense_Mutation p.G479E 0.04 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 15 72338841 72338841 G A MYO9A Missense_Mutation p.P22S 0.05 deleterious(0) probably_damaging(0.998) TCGA-CV-A468-01 15 78211247 78211247 C T RP11-114H24.7 Intron 0.07 TCGA-CV-A468-01 15 78755299 78755299 G A IREB2 Missense_Mutation p.A48T 0.04 deleterious(0.04) benign(0.036) TCGA-CV-A468-01 15 79749370 79749370 C T KIAA1024 Missense_Mutation p.P294L 0.05 tolerated(0.73) benign(0.001) TCGA-CV-A468-01 15 99672296 99672296 G A SYNM Missense_Mutation p.G1243E 0.07 tolerated(1) possibly_damaging(0.9) TCGA-CV-A468-01 16 12798615 12798615 T G CPPED1 Missense_Mutation p.Q194P 0.06 tolerated(0.08) benign(0.433) TCGA-CV-A468-01 16 24942209 24942209 C T ARHGAP17 Missense_Mutation p.R804K 0.04 tolerated_low_confidence(0.06) benign(0) TCGA-CV-A468-01 16 26147009 26147009 C T HS3ST4 Missense_Mutation p.P271S 0.05 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 16 30006111 30006111 C T HIRIP3 Missense_Mutation p.G119R 0.06 tolerated(0.36) benign(0.009) TCGA-CV-A468-01 16 31374287 31374287 C T ITGAX Missense_Mutation p.S464F 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 16 3432731 3432731 C T ZSCAN32 3'UTR 0.10 TCGA-CV-A468-01 16 46638354 46638354 C T SHCBP1 Missense_Mutation p.D237N 0.07 tolerated(0.17) benign(0.015) TCGA-CV-A468-01 16 46638355 46638355 T A SHCBP1 Missense_Mutation p.E236D 0.07 tolerated(0.32) benign(0.189) TCGA-CV-A468-01 16 48261722 48261722 G A ABCC11 Silent p.V130V 0.06 TCGA-CV-A468-01 16 57684187 57684187 C T GPR56 5'UTR 0.11 TCGA-CV-A468-01 16 67412491 67412491 G A LRRC36 Splice_Site p.X603_splice 0.06 TCGA-CV-A468-01 16 67866389 67866389 G T CENPT Missense_Mutation p.T57K 0.10 tolerated(0.11) benign(0.241) TCGA-CV-A468-01 16 70514946 70514946 G A COG4 Silent p.F779F 0.06 TCGA-CV-A468-01 16 76461356 76461356 C T CNTNAP4 Missense_Mutation p.S108L 0.04 tolerated(0.09) benign(0.005) TCGA-CV-A468-01 16 81181078 81181078 C T PKD1L2 RNA 0.06 TCGA-CV-A468-01 16 81181080 81181080 T A PKD1L2 RNA 0.06 TCGA-CV-A468-01 16 82069268 82069268 T A HSD17B2 Missense_Mutation p.V80E 0.04 deleterious(0) probably_damaging(0.92) TCGA-CV-A468-01 16 84432170 84432170 G A ATP2C2 Silent p.K55K 0.09 TCGA-CV-A468-01 16 87782313 87782313 G A KLHDC4 Silent p.L158L 0.06 TCGA-CV-A468-01 16 87782314 87782314 G A KLHDC4 Silent p.V157V 0.06 TCGA-CV-A468-01 17 10204226 10204226 C T MYH13 3'UTR 0.06 TCGA-CV-A468-01 17 10304953 10304953 C T MYH8 Silent p.L946L 0.04 TCGA-CV-A468-01 17 11522984 11522984 G A DNAH9 Silent p.R412R 0.09 TCGA-CV-A468-01 17 12626229 12626229 G A MYOCD Missense_Mutation p.D107N 0.10 tolerated(0.09) probably_damaging(0.995) TCGA-CV-A468-01 17 1264556 1264556 G A YWHAE Silent p.A136A 0.07 TCGA-CV-A468-01 17 17075092 17075092 C T MPRIP Missense_Mutation p.L742F 0.06 deleterious(0) probably_damaging(0.983) TCGA-CV-A468-01 17 28409990 28409990 G A EFCAB5 Missense_Mutation p.G1170S 0.06 tolerated(0.29) benign(0.187) TCGA-CV-A468-01 17 30509843 30509843 C T RHOT1 Missense_Mutation p.P133S 0.05 deleterious(0.02) possibly_damaging(0.493) TCGA-CV-A468-01 17 37264407 37264407 G A PLXDC1 Silent p.S187S 0.06 TCGA-CV-A468-01 17 37264408 37264408 G A PLXDC1 Missense_Mutation p.S187F 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 17 42475680 42475680 G A GPATCH8 Silent p.S1255S 0.04 TCGA-CV-A468-01 17 44110815 44110815 A G KANSL1 Missense_Mutation p.V893A 0.14 deleterious(0.04) possibly_damaging(0.493) TCGA-CV-A468-01 17 4578424 4578424 G A PELP1 Silent p.S408S 0.11 TCGA-CV-A468-01 17 61499145 61499145 C T TANC2 Silent p.L1934L 0.07 TCGA-CV-A468-01 17 62080349 62080349 G A C17orf72 3'Flank 0.14 TCGA-CV-A468-01 17 67151948 67151948 C T ABCA10 Missense_Mutation p.E1192K 0.05 deleterious(0) possibly_damaging(0.872) TCGA-CV-A468-01 17 6978569 6978569 G C CLEC10A Intron 0.14 TCGA-CV-A468-01 17 7096290 7096290 G A DLG4 Nonsense_Mutation p.Q657* 0.10 TCGA-CV-A468-01 17 73467936 73467936 C T KIAA0195 5'UTR 0.10 TCGA-CV-A468-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.15 TCGA-CV-A468-01 17 7574004 7574004 G C TP53 Missense_Mutation p.F341L 0.15 tolerated(0.98) benign(0.029) TCGA-CV-A468-01 17 76130015 76130015 G A TMC8 Nonsense_Mutation p.W250* 0.07 TCGA-CV-A468-01 17 76455952 76455952 G A DNAH17 Silent p.I3175I 0.07 TCGA-CV-A468-01 17 78882691 78882691 G A RPTOR Missense_Mutation p.D828N 0.05 tolerated(0.37) benign(0.092) TCGA-CV-A468-01 17 8049698 8049698 G A PER1 Missense_Mutation p.T677I 0.06 tolerated(0.19) benign(0.01) TCGA-CV-A468-01 18 50683730 50683730 C T DCC Silent p.I422I 0.04 TCGA-CV-A468-01 18 9559565 9559565 G A PPP4R1 Missense_Mutation p.S627F 0.06 deleterious(0) probably_damaging(0.986) TCGA-CV-A468-01 19 12089398 12089398 G A ZNF763 Missense_Mutation p.R223K 0.07 deleterious(0.05) benign(0.158) TCGA-CV-A468-01 19 14741007 14741007 G A EMR3 Silent p.F552F 0.06 TCGA-CV-A468-01 19 18648428 18648428 G C FKBP8 Missense_Mutation p.L310V 0.11 deleterious(0) possibly_damaging(0.453) TCGA-CV-A468-01 19 18649037 18649037 G C FKBP8 Missense_Mutation p.S254C 0.06 tolerated(0.1) benign(0.151) TCGA-CV-A468-01 19 18967057 18967057 A G UPF1 Missense_Mutation p.D591G 0.07 deleterious(0) possibly_damaging(0.567) TCGA-CV-A468-01 19 19917754 19917754 G A ZNF506 Missense_Mutation p.L43F 0.05 deleterious(0) probably_damaging(0.973) TCGA-CV-A468-01 19 19917755 19917755 G A ZNF506 Silent p.F42F 0.05 TCGA-CV-A468-01 19 30936019 30936019 C T ZNF536 Missense_Mutation p.P517L 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 19 35523587 35523587 G A SCN1B Missense_Mutation p.E66K 0.05 tolerated(0.07) possibly_damaging(0.895) TCGA-CV-A468-01 19 36214841 36214841 C T KMT2B Silent p.F1089F 0.13 TCGA-CV-A468-01 19 36369999 36369999 C T APLP1 Silent p.S579S 0.09 TCGA-CV-A468-01 19 38056756 38056756 C T ZNF571 Missense_Mutation p.E192K 0.06 tolerated(0.11) benign(0.127) TCGA-CV-A468-01 19 40900137 40900137 G A PRX Silent p.V1374V 0.10 TCGA-CV-A468-01 19 43233294 43233294 G A PSG3 Silent p.S408S 0.05 TCGA-CV-A468-01 19 4454089 4454089 C T UBXN6 Missense_Mutation p.E29K 0.04 tolerated(0.32) benign(0.15) TCGA-CV-A468-01 19 44732541 44732541 C T ZNF227 Intron 0.09 TCGA-CV-A468-01 19 45997427 45997427 G A RTN2 Silent p.L271L 0.06 TCGA-CV-A468-01 19 46094693 46094693 C T GPR4 Silent p.T144T 0.06 TCGA-CV-A468-01 19 46915888 46915888 C T CCDC8 Silent p.E60E 0.06 TCGA-CV-A468-01 19 49398633 49398633 C T TULP2 Silent p.R113R 0.07 TCGA-CV-A468-01 19 50185211 50185211 C T PRMT1 Silent p.S79S 0.09 TCGA-CV-A468-01 19 53056775 53056775 C T ZNF808 Silent p.I202I 0.06 TCGA-CV-A468-01 19 53086360 53086360 G A ZNF701 Missense_Mutation p.G416R 0.07 deleterious(0.02) probably_damaging(0.975) TCGA-CV-A468-01 19 53086361 53086361 G A ZNF701 Missense_Mutation p.G416E 0.07 deleterious(0.01) probably_damaging(0.966) TCGA-CV-A468-01 19 55255358 55255358 G A KIR2DL3 Silent p.R162R 0.07 TCGA-CV-A468-01 19 55399706 55399706 G A FCAR Intron 0.14 TCGA-CV-A468-01 19 55816854 55816854 G A BRSK1 Missense_Mutation p.G597E 0.04 deleterious(0) probably_damaging(0.938) TCGA-CV-A468-01 19 5626462 5626462 C T SAFB Missense_Mutation p.S79F 0.07 tolerated(0.3) probably_damaging(0.961) TCGA-CV-A468-01 19 57641738 57641738 C A USP29 Silent p.V565V 0.04 TCGA-CV-A468-01 19 58579624 58579624 C T ZNF135 Missense_Mutation p.S615F 0.05 deleterious(0.04) probably_damaging(0.949) TCGA-CV-A468-01 19 8122782 8122782 C T CCL25 Silent p.S141S 0.06 TCGA-CV-A468-01 19 9047026 9047026 C G MUC16 Silent p.T11535T 0.06 TCGA-CV-A468-01 19 9073129 9073129 C T MUC16 Missense_Mutation p.V4773I 0.06 unknown(0) TCGA-CV-A468-01 19 9077258 9077258 G A MUC16 Silent p.T3396T 0.05 TCGA-CV-A468-01 19 9083683 9083683 C T MUC16 Missense_Mutation p.G2711E 0.06 unknown(0) TCGA-CV-A468-01 1 100598426 100598426 G T SASS6 5'UTR 0.06 TCGA-CV-A468-01 1 111957747 111957747 G A OVGP1 Missense_Mutation p.S459F 0.06 deleterious_low_confidence(0.03) benign(0.035) TCGA-CV-A468-01 1 12819360 12819360 C T C1orf158 Missense_Mutation p.R115C 0.04 tolerated(0.06) possibly_damaging(0.471) TCGA-CV-A468-01 1 12919781 12919781 G T PRAMEF2 Missense_Mutation p.R174M 0.04 deleterious(0) probably_damaging(0.998) TCGA-CV-A468-01 1 145533441 145533441 G A ITGA10 Missense_Mutation p.G442S 0.06 tolerated(0.73) benign(0.008) TCGA-CV-A468-01 1 152192107 152192107 C T HRNR Silent p.G666G 0.05 TCGA-CV-A468-01 1 152285476 152285476 C T FLG Missense_Mutation p.G629E 0.04 possibly_damaging(0.78) TCGA-CV-A468-01 1 157667151 157667151 G A FCRL3 Missense_Mutation p.T208I 0.07 tolerated(0.06) probably_damaging(0.987) TCGA-CV-A468-01 1 158641987 158641987 C T SPTA1 Splice_Site p.X451_splice 0.09 TCGA-CV-A468-01 1 158651380 158651380 C T SPTA1 Silent p.R156R 0.06 TCGA-CV-A468-01 1 158746811 158746811 G A OR6N2 Silent p.F205F 0.09 TCGA-CV-A468-01 1 160832526 160832526 A T CD244 5'UTR 0.15 TCGA-CV-A468-01 1 169697005 169697005 A T SELE Missense_Mutation p.I448N 0.07 tolerated(0.18) benign(0.002) TCGA-CV-A468-01 1 180243576 180243576 G A LHX4 Silent p.G345G 0.03 TCGA-CV-A468-01 1 183510184 183510184 T A SMG7 Missense_Mutation p.I454K 0.04 deleterious(0.02) benign(0.094) TCGA-CV-A468-01 1 185267255 185267255 A C IVNS1ABP Missense_Mutation p.F614C 0.03 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 1 190234027 190234027 G A BRINP3 Missense_Mutation p.H196Y 0.05 deleterious(0) possibly_damaging(0.565) TCGA-CV-A468-01 1 206651635 206651635 C T IKBKE Silent p.S315S 0.06 TCGA-CV-A468-01 1 207304950 207304950 A G C4BPA Missense_Mutation p.T317A 0.07 tolerated(0.82) benign(0.016) TCGA-CV-A468-01 1 208215711 208215711 C A PLXNA2 Missense_Mutation p.V1340L 0.08 tolerated(0.11) probably_damaging(0.935) TCGA-CV-A468-01 1 220823975 220823975 C T MARK1 Missense_Mutation p.S495F 0.04 deleterious(0.01) benign(0.061) TCGA-CV-A468-01 1 22182344 22182344 G A HSPG2 Silent p.P1879P 0.09 TCGA-CV-A468-01 1 222920367 222920367 C T FAM177B Missense_Mutation p.S62F 0.06 deleterious(0) probably_damaging(0.935) TCGA-CV-A468-01 1 227387341 227387341 G A CDC42BPA Missense_Mutation p.R123C 0.07 deleterious(0) probably_damaging(0.996) TCGA-CV-A468-01 1 228401943 228401943 G A OBSCN Missense_Mutation p.E443K 0.05 probably_damaging(0.993) TCGA-CV-A468-01 1 228584723 228584723 G A TRIM11 Missense_Mutation p.P262S 0.10 deleterious(0.03) benign(0.158) TCGA-CV-A468-01 1 229772876 229772876 C T URB2 Missense_Mutation p.P839L 0.05 tolerated(0.05) probably_damaging(0.96) TCGA-CV-A468-01 1 232943748 232943748 G A MAP10 Silent p.V993V 0.05 TCGA-CV-A468-01 1 235291170 235291170 G A TOMM20 Intron 0.05 TCGA-CV-A468-01 1 236718728 236718728 C T HEATR1 Missense_Mutation p.D1931N 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-CV-A468-01 1 236718729 236718729 C T HEATR1 Silent p.K1930K 0.09 TCGA-CV-A468-01 1 247694827 247694827 C T OR2C3 3'UTR 0.08 TCGA-CV-A468-01 1 248525564 248525564 G A OR2T4 Missense_Mutation p.E228K 0.04 tolerated(0.09) benign(0.232) TCGA-CV-A468-01 1 248551746 248551746 C T OR2T6 Silent p.T279T 0.09 TCGA-CV-A468-01 1 248569508 248569508 G A OR2T1 Silent p.K71K 0.04 TCGA-CV-A468-01 1 248569860 248569860 C T OR2T1 Missense_Mutation p.R189W 0.06 tolerated(0.09) benign(0.052) TCGA-CV-A468-01 1 26610676 26610676 C T UBXN11 Missense_Mutation p.G345D 0.06 deleterious(0.01) benign(0.194) TCGA-CV-A468-01 1 26610677 26610677 C T UBXN11 Missense_Mutation p.G345S 0.05 deleterious(0.01) possibly_damaging(0.821) TCGA-CV-A468-01 1 35227131 35227131 C T GJB4 Silent p.V92V 0.07 TCGA-CV-A468-01 1 36026201 36026201 C T NCDN Missense_Mutation p.S150F 0.05 deleterious(0) probably_damaging(0.995) TCGA-CV-A468-01 1 39988096 39988096 G A BMP8A Missense_Mutation p.G297D 0.08 tolerated(0.13) benign(0.078) TCGA-CV-A468-01 1 40363483 40363483 G A MYCL Missense_Mutation p.P249L 0.06 deleterious(0) probably_damaging(0.991) TCGA-CV-A468-01 1 44019309 44019309 G A PTPRF Splice_Site p.X79_splice 0.04 TCGA-CV-A468-01 1 4772086 4772086 C T AJAP1 Silent p.L52L 0.05 TCGA-CV-A468-01 1 54344378 54344378 C T YIPF1 Silent p.K71K 0.06 TCGA-CV-A468-01 1 60381704 60381704 G A CYP2J2 Silent p.G93G 0.05 TCGA-CV-A468-01 1 66075730 66075730 G A LEPR Missense_Mutation p.G618E 0.05 deleterious(0) possibly_damaging(0.883) TCGA-CV-A468-01 1 70504289 70504289 C T LRRC7 Missense_Mutation p.P890S 0.06 tolerated_low_confidence(0.28) benign(0.001) TCGA-CV-A468-01 1 75038709 75038709 C T C1orf173 Silent p.G895G 0.05 TCGA-CV-A468-01 1 78324662 78324662 G A FAM73A Missense_Mutation p.E346K 0.06 tolerated(0.8) benign(0.345) TCGA-CV-A468-01 1 907470 907470 C T PLEKHN1 Missense_Mutation p.R269C 0.05 deleterious(0) possibly_damaging(0.707) TCGA-CV-A468-01 1 94546075 94546075 G A ABCA4 Missense_Mutation p.S353F 0.05 deleterious(0.01) benign(0.013) TCGA-CV-A468-01 1 99771917 99771917 C T LPPR4 Missense_Mutation p.P548L 0.05 deleterious(0) possibly_damaging(0.448) TCGA-CV-A468-01 20 14066323 14066323 C T MACROD2 Missense_Mutation p.L74F 0.11 deleterious(0.04) possibly_damaging(0.533) TCGA-CV-A468-01 20 17446183 17446183 C T PCSK2 Missense_Mutation p.S472F 0.21 tolerated(0.58) benign(0.406) TCGA-CV-A468-01 20 17446184 17446184 C T PCSK2 Silent p.S472S 0.21 TCGA-CV-A468-01 20 20033136 20033136 C T CRNKL1 Missense_Mutation p.A112T 0.09 deleterious_low_confidence(0) benign(0.018) TCGA-CV-A468-01 20 33577925 33577925 G T MYH7B Nonsense_Mutation p.E668* 0.07 TCGA-CV-A468-01 20 36560169 36560169 G A VSTM2L Missense_Mutation p.R85Q 0.07 tolerated(0.18) benign(0.097) TCGA-CV-A468-01 20 37187041 37187041 C T RALGAPB Missense_Mutation p.P1159L 0.04 deleterious(0.05) benign(0.318) TCGA-CV-A468-01 20 44691089 44691089 G A NCOA5 Silent p.S530S 0.07 TCGA-CV-A468-01 20 47628527 47628527 C T ARFGEF2 Missense_Mutation p.S1275L 0.05 deleterious(0) benign(0.382) TCGA-CV-A468-01 20 52561467 52561467 G A BCAS1 Silent p.S583S 0.05 TCGA-CV-A468-01 20 60575778 60575778 C T TAF4 Splice_Site p.X829_splice 0.07 TCGA-CV-A468-01 20 60774195 60774195 G A MTG2 Silent p.G236G 0.06 TCGA-CV-A468-01 20 62839357 62839357 G A MYT1 Missense_Mutation p.E270K 0.13 possibly_damaging(0.651) TCGA-CV-A468-01 20 9453970 9453970 C T PLCB4 Silent p.V1139V 0.10 TCGA-CV-A468-01 21 30968952 30968952 C T GRIK1-AS2 3'UTR 0.09 TCGA-CV-A468-01 21 34003361 34003361 G A SYNJ1 Missense_Mutation p.P1595S 0.13 tolerated_low_confidence(0.13) benign(0.077) TCGA-CV-A468-01 21 41710112 41710112 C T DSCAM Missense_Mutation p.E567K 0.07 tolerated(0.26) benign(0.155) TCGA-CV-A468-01 22 17071881 17071881 G A CCT8L2 Silent p.I520I 0.07 TCGA-CV-A468-01 22 20074784 20074784 C T DGCR8 Missense_Mutation p.P274S 0.06 tolerated(0.39) benign(0.021) TCGA-CV-A468-01 22 21133696 21133696 G A SERPIND1 Silent p.G32G 0.08 TCGA-CV-A468-01 22 30950812 30950812 G A GAL3ST1 3'UTR 0.27 TCGA-CV-A468-01 22 31331057 31331057 G A MORC2 Missense_Mutation p.P573L 0.09 tolerated(0.08) benign(0.004) TCGA-CV-A468-01 22 31864189 31864189 G A EIF4ENIF1 Silent p.D90D 0.06 TCGA-CV-A468-01 22 32894343 32894343 T A FBXO7 Silent p.I465I 0.06 TCGA-CV-A468-01 22 38245379 38245379 G A EIF3L 5'UTR 0.06 TCGA-CV-A468-01 22 38270416 38270416 C T EIF3L Missense_Mutation p.S264F 0.06 deleterious(0) possibly_damaging(0.781) TCGA-CV-A468-01 22 41568555 41568555 C T EP300 Missense_Mutation p.P1502L 0.14 probably_damaging(0.994) TCGA-CV-A468-01 22 43206940 43206940 C T ARFGAP3 Missense_Mutation p.E359K 0.10 deleterious(0.02) benign(0.075) TCGA-CV-A468-01 22 43821159 43821159 G A MPPED1 Silent p.Q56Q 0.07 TCGA-CV-A468-01 22 50170679 50170679 C A BRD1 Intron 0.09 TCGA-CV-A468-01 22 50686181 50686181 C T HDAC10 Silent p.E454E 0.10 TCGA-CV-A468-01 2 108872055 108872055 G A SULT1C3 Missense_Mutation p.D143N 0.05 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 2 135756431 135756431 C T MAP3K19 Missense_Mutation p.E151K 0.07 deleterious(0.04) benign(0.055) TCGA-CV-A468-01 2 136566587 136566587 C T LCT Silent p.E1110E 0.07 TCGA-CV-A468-01 2 136736889 136736889 C A DARS Nonsense_Mutation p.E58* 0.06 TCGA-CV-A468-01 2 167262388 167262388 C T SCN7A Missense_Mutation p.R1584K 0.07 deleterious(0.03) probably_damaging(0.992) TCGA-CV-A468-01 2 1677502 1677502 C T PXDN Missense_Mutation p.D311N 0.04 deleterious(0.03) probably_damaging(0.962) TCGA-CV-A468-01 2 170103335 170103335 C T LRP2 Missense_Mutation p.E1024K 0.05 benign(0.013) TCGA-CV-A468-01 2 179528420 179528420 C T TTN Missense_Mutation p.E12156K 0.04 TCGA-CV-A468-01 2 179584052 179584052 C T TTN Missense_Mutation p.G8022E 0.08 TCGA-CV-A468-01 2 179595883 179595883 C T TTN Missense_Mutation p.G5837R 0.06 TCGA-CV-A468-01 2 185801657 185801657 G A ZNF804A Missense_Mutation p.E512K 0.05 tolerated(0.07) benign(0.076) TCGA-CV-A468-01 2 196729521 196729521 G T DNAH7 Silent p.I2286I 0.06 TCGA-CV-A468-01 2 202149916 202149916 C T CASP8 Missense_Mutation p.P453S 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 2 202153458 202153458 C T ALS2CR12 Missense_Mutation p.G420R 0.09 tolerated_low_confidence(0.18) benign(0.016) TCGA-CV-A468-01 2 211085508 211085508 C T ACADL Silent p.G32G 0.09 TCGA-CV-A468-01 2 219903262 219903262 C T CCDC108 Silent p.K64K 0.10 TCGA-CV-A468-01 2 230911030 230911030 G A SLC16A14 Missense_Mutation p.A271V 0.06 tolerated(0.44) benign(0.016) TCGA-CV-A468-01 2 232393153 232393153 G A NMUR1 Silent p.S193S 0.09 TCGA-CV-A468-01 2 234878916 234878916 C T TRPM8 Missense_Mutation p.P734L 0.04 deleterious(0) probably_damaging(0.998) TCGA-CV-A468-01 2 238434337 238434337 C A MLPH Missense_Mutation p.H257N 0.06 tolerated(0.31) benign(0.063) TCGA-CV-A468-01 2 238434338 238434338 A T MLPH Missense_Mutation p.H257L 0.07 tolerated(0.65) benign(0.002) TCGA-CV-A468-01 2 48896892 48896892 G A STON1-GTF2A1L Missense_Mutation p.R1041Q 0.04 tolerated(1) benign(0) TCGA-CV-A468-01 2 54859746 54859746 G A SPTBN1 Missense_Mutation p.G1203E 0.06 deleterious(0.03) benign(0.07) TCGA-CV-A468-01 2 61508292 61508292 A G USP34 Missense_Mutation p.F1695S 0.10 deleterious(0.01) possibly_damaging(0.554) TCGA-CV-A468-01 2 68607875 68607875 G A PLEK Silent p.T73T 0.06 TCGA-CV-A468-01 2 69173532 69173532 G A GKN2 Silent p.L126L 0.05 TCGA-CV-A468-01 2 74466495 74466495 C T SLC4A5 Silent p.K762K 0.07 TCGA-CV-A468-01 2 74598189 74598189 G A DCTN1 Nonsense_Mutation p.Q254* 0.05 TCGA-CV-A468-01 2 77746581 77746581 C T LRRTM4 Silent p.L138L 0.05 TCGA-CV-A468-01 2 80136798 80136798 A C CTNNA2 Missense_Mutation p.I311L 0.05 deleterious(0.01) possibly_damaging(0.55) TCGA-CV-A468-01 2 87042814 87042814 G A CD8B Silent p.T216T 0.06 TCGA-CV-A468-01 3 100057967 100057967 C T NIT2 Missense_Mutation p.S15F 0.06 deleterious(0.02) possibly_damaging(0.561) TCGA-CV-A468-01 3 100414006 100414006 G A GPR128 3'UTR 0.20 TCGA-CV-A468-01 3 100489717 100489717 C T ABI3BP Silent p.E826E 0.07 TCGA-CV-A468-01 3 108218300 108218300 A G MYH15 Splice_Site p.X195_splice 0.07 TCGA-CV-A468-01 3 108363276 108363276 C T DZIP3 Silent p.L469L 0.05 TCGA-CV-A468-01 3 108541715 108541715 G A TRAT1 5'UTR 0.09 TCGA-CV-A468-01 3 11059022 11059022 C T SLC6A1 Missense_Mutation p.P42L 0.07 tolerated(0.2) benign(0.238) TCGA-CV-A468-01 3 118942966 118942966 G A B4GALT4 Missense_Mutation p.L205F 0.07 tolerated(0.07) benign(0.169) TCGA-CV-A468-01 3 118942967 118942967 G A B4GALT4 Silent p.N204N 0.07 TCGA-CV-A468-01 3 124646391 124646391 G A MUC13 Silent p.L167L 0.10 TCGA-CV-A468-01 3 126142196 126142196 G A CCDC37 Missense_Mutation p.E371K 0.10 tolerated(0.06) benign(0.017) TCGA-CV-A468-01 3 128060257 128060257 C T EEFSEC Missense_Mutation p.P323L 0.09 tolerated(0.2) benign(0.03) TCGA-CV-A468-01 3 128200698 128200698 G A GATA2 Silent p.V369V 0.10 TCGA-CV-A468-01 3 129134155 129134155 G A EFCAB12 Silent p.I257I 0.15 TCGA-CV-A468-01 3 129140500 129140500 C T EFCAB12 Missense_Mutation p.E66K 0.10 tolerated(0.25) benign(0.046) TCGA-CV-A468-01 3 129140501 129140501 C T EFCAB12 Silent p.K65K 0.11 TCGA-CV-A468-01 3 131388572 131388572 A T CPNE4 Missense_Mutation p.F210I 0.04 deleterious(0.03) benign(0.192) TCGA-CV-A468-01 3 141290312 141290312 T A RASA2 Nonsense_Mutation p.L362* 0.07 TCGA-CV-A468-01 3 142416889 142416889 C T PLS1 Missense_Mutation p.L451F 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CV-A468-01 3 155654174 155654174 C T GMPS Missense_Mutation p.H619Y 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A468-01 3 171338243 171338243 G A PLD1 Silent p.N887N 0.07 TCGA-CV-A468-01 3 173322199 173322199 G A NLGN1 5'UTR 0.09 TCGA-CV-A468-01 3 178742977 178742977 G A ZMAT3 Missense_Mutation p.P233L 0.09 deleterious(0) probably_damaging(0.972) TCGA-CV-A468-01 3 178742978 178742978 G A ZMAT3 Missense_Mutation p.P233S 0.09 tolerated(0.17) probably_damaging(0.934) TCGA-CV-A468-01 3 180381721 180381721 A T CCDC39 Nonsense_Mutation p.Y48* 0.09 TCGA-CV-A468-01 3 186338532 186338532 G A AHSG Missense_Mutation p.G306E 0.08 tolerated(1) benign(0.01) TCGA-CV-A468-01 3 186838997 186838997 G A RPL39L Missense_Mutation p.P31L 0.07 deleterious(0.02) benign(0) TCGA-CV-A468-01 3 186838998 186838998 G A RPL39L Missense_Mutation p.P31S 0.07 tolerated(0.05) benign(0) TCGA-CV-A468-01 3 188123992 188123992 C T LPP Silent p.S28S 0.09 TCGA-CV-A468-01 3 52400896 52400896 C T DNAH1 Missense_Mutation p.H1920Y 0.09 probably_damaging(0.995) TCGA-CV-A468-01 3 55733530 55733530 C T ERC2 Missense_Mutation p.R908K 0.04 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 3 58089729 58089729 G A FLNB Silent p.G509G 0.06 TCGA-CV-A468-01 3 62478013 62478013 C T CADPS Missense_Mutation p.D946N 0.06 tolerated(0.17) possibly_damaging(0.539) TCGA-CV-A468-01 3 97868626 97868626 C T OR5H14 Missense_Mutation p.P133S 0.06 tolerated(0.05) benign(0.056) TCGA-CV-A468-01 4 104030071 104030071 G A CENPE Missense_Mutation p.P2634S 0.11 possibly_damaging(0.846) TCGA-CV-A468-01 4 106650653 106650653 G A GSTCD Missense_Mutation p.E413K 0.10 tolerated(0.22) probably_damaging(0.985) TCGA-CV-A468-01 4 119665181 119665181 G A SEC24D Missense_Mutation p.L653F 0.08 tolerated(0.14) possibly_damaging(0.522) TCGA-CV-A468-01 4 122828544 122828544 A T TRPC3 Missense_Mutation p.F657L 0.09 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 4 147796051 147796051 C T TTC29 Missense_Mutation p.E206K 0.10 deleterious(0) probably_damaging(0.997) TCGA-CV-A468-01 4 158254059 158254059 G A GRIA2 Missense_Mutation p.R324K 0.10 tolerated(0.05) benign(0.011) TCGA-CV-A468-01 4 158262422 158262422 C T GRIA2 Silent p.L617L 0.10 TCGA-CV-A468-01 4 162402297 162402297 C T FSTL5 Missense_Mutation p.G495R 0.09 deleterious(0.02) benign(0.038) TCGA-CV-A468-01 4 162697226 162697226 C T FSTL5 Missense_Mutation p.G137E 0.16 deleterious(0.04) benign(0.283) TCGA-CV-A468-01 4 186545293 186545293 G A SORBS2 Silent p.Y526Y 0.09 TCGA-CV-A468-01 4 188924697 188924697 C T ZFP42 Missense_Mutation p.R246W 0.11 deleterious(0) possibly_damaging(0.474) TCGA-CV-A468-01 4 25676153 25676153 G A SLC34A2 Missense_Mutation p.A454T 0.08 deleterious(0.02) benign(0.363) TCGA-CV-A468-01 4 39436031 39436031 G A KLB Missense_Mutation p.G343R 0.12 tolerated(0.25) benign(0.148) TCGA-CV-A468-01 4 39851152 39851152 G A PDS5A Silent p.S1069S 0.12 TCGA-CV-A468-01 4 48512910 48512910 G A FRYL Missense_Mutation p.S2746F 0.10 tolerated(0.51) probably_damaging(0.997) TCGA-CV-A468-01 4 6925443 6925443 C T TBC1D14 Silent p.S109S 0.10 TCGA-CV-A468-01 4 72352685 72352685 G A SLC4A4 Missense_Mutation p.D642N 0.09 tolerated(0.66) benign(0.005) TCGA-CV-A468-01 4 73414295 73414295 C T ADAMTS3 Missense_Mutation p.R135K 0.08 tolerated(0.14) benign(0.005) TCGA-CV-A468-01 4 79440498 79440498 C T FRAS1 Missense_Mutation p.A3468V 0.10 probably_damaging(0.987) TCGA-CV-A468-01 4 8293147 8293147 G A HTRA3 Silent p.G253G 0.11 TCGA-CV-A468-01 4 8383249 8383249 G A ACOX3 Silent p.S541S 0.05 TCGA-CV-A468-01 4 90035653 90035653 C T TIGD2 Missense_Mutation p.R510W 0.07 deleterious(0) unknown(0) TCGA-CV-A468-01 4 90856924 90856924 G A MMRN1 Missense_Mutation p.R698K 0.08 tolerated(0.25) benign(0.015) TCGA-CV-A468-01 4 96124061 96124061 C A UNC5C Missense_Mutation p.D653Y 0.11 deleterious(0) possibly_damaging(0.707) TCGA-CV-A468-01 4 96124062 96124062 C T UNC5C Silent p.L652L 0.11 TCGA-CV-A468-01 4 98893488 98893488 C T STPG2 Silent p.R292R 0.07 TCGA-CV-A468-01 5 112403781 112403781 G A MCC Silent p.S675S 0.07 TCGA-CV-A468-01 5 1214088 1214088 G A SLC6A19 Silent p.P265P 0.13 TCGA-CV-A468-01 5 127728910 127728910 G T FBN2 Silent p.I461I 0.07 TCGA-CV-A468-01 5 133481810 133481810 G A TCF7 Intron 0.09 TCGA-CV-A468-01 5 135693001 135693001 G A TRPC7 Silent p.A25A 0.06 TCGA-CV-A468-01 5 13701416 13701416 C T DNAH5 Missense_Mutation p.G4490R 0.09 probably_damaging(0.988) TCGA-CV-A468-01 5 138994175 138994175 C T UBE2D2 Silent p.F31F 0.05 TCGA-CV-A468-01 5 140431755 140431755 G A PCDHB1 Missense_Mutation p.D234N 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A468-01 5 140802483 140802483 C T PCDHGA11 Silent p.I563I 0.05 TCGA-CV-A468-01 5 140812167 140812167 C T PCDHGA12 Missense_Mutation p.P614L 0.07 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-CV-A468-01 5 141248194 141248194 C T PCDH1 Silent p.E281E 0.07 TCGA-CV-A468-01 5 149759182 149759182 C T TCOF1 Missense_Mutation p.P916S 0.06 tolerated(0.16) probably_damaging(0.96) TCGA-CV-A468-01 5 150911397 150911397 G A FAT2 Missense_Mutation p.R3188C 0.07 benign(0.013) TCGA-CV-A468-01 5 154173241 154173241 C T LARP1 Missense_Mutation p.P199S 0.04 tolerated(0.73) benign(0.019) TCGA-CV-A468-01 5 156991411 156991411 C T ADAM19 Missense_Mutation p.R74Q 0.07 tolerated(0.64) benign(0.004) TCGA-CV-A468-01 5 169127106 169127106 G A DOCK2 Silent p.V407V 0.04 TCGA-CV-A468-01 5 169502955 169502955 C T DOCK2 Missense_Mutation p.P1578L 0.07 deleterious(0.03) benign(0.072) TCGA-CV-A468-01 5 171544572 171544572 G A STK10 Missense_Mutation p.L145F 0.07 deleterious(0) probably_damaging(0.997) TCGA-CV-A468-01 5 176017686 176017686 G A CDHR2 Silent p.K1179K 0.06 TCGA-CV-A468-01 5 24487975 24487975 C T CDH10 Missense_Mutation p.D722N 0.09 tolerated(0.12) probably_damaging(0.989) TCGA-CV-A468-01 5 26903817 26903817 C T CDH9 Missense_Mutation p.G310R 0.12 deleterious(0.01) probably_damaging(1) TCGA-CV-A468-01 5 34941270 34941270 C T DNAJC21 Missense_Mutation p.S322L 0.14 tolerated(0.71) benign(0.021) TCGA-CV-A468-01 5 35740240 35740240 C T SPEF2 Silent p.F1067F 0.10 TCGA-CV-A468-01 5 35763785 35763785 C T SPEF2 Missense_Mutation p.S1261F 0.08 tolerated(0.1) probably_damaging(0.997) TCGA-CV-A468-01 5 35876365 35876365 G A IL7R Missense_Mutation p.R386K 0.13 tolerated(0.38) benign(0.061) TCGA-CV-A468-01 5 38350679 38350679 G A EGFLAM Missense_Mutation p.G123E 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-A468-01 5 38350680 38350680 G A EGFLAM Silent p.G123G 0.10 TCGA-CV-A468-01 5 39202854 39202854 G A FYB Missense_Mutation p.S80F 0.15 tolerated(0.73) benign(0.001) TCGA-CV-A468-01 5 39311416 39311416 C T C9 Missense_Mutation p.D312N 0.05 tolerated(0.17) benign(0.344) TCGA-CV-A468-01 5 45267254 45267254 C T HCN1 Missense_Mutation p.E574K 0.04 deleterious(0.03) probably_damaging(0.987) TCGA-CV-A468-01 5 52361760 52361760 C T ITGA2 Silent p.S632S 0.09 TCGA-CV-A468-01 5 64892886 64892886 G A TRIM23 Missense_Mutation p.P434L 0.05 deleterious(0.01) possibly_damaging(0.857) TCGA-CV-A468-01 5 71482527 71482527 C T MAP1B Silent p.L152L 0.05 TCGA-CV-A468-01 5 79031022 79031022 C T CMYA5 Missense_Mutation p.S2145F 0.05 benign(0.052) TCGA-CV-A468-01 5 88057136 88057136 T A MEF2C Nonsense_Mutation p.K90* 0.06 TCGA-CV-A468-01 6 102483342 102483342 G A GRIK2 Missense_Mutation p.E738K 0.05 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 6 105606463 105606463 C T POPDC3 Missense_Mutation p.G253E 0.05 tolerated(0.19) possibly_damaging(0.624) TCGA-CV-A468-01 6 117650566 117650566 C T ROS1 Silent p.G1764G 0.07 TCGA-CV-A468-01 6 130762540 130762540 G A TMEM200A Missense_Mutation p.D325N 0.08 deleterious(0.02) benign(0.136) TCGA-CV-A468-01 6 131277325 131277325 C T EPB41L2 Missense_Mutation p.E101K 0.05 tolerated(0.19) benign(0.067) TCGA-CV-A468-01 6 138655329 138655329 G A KIAA1244 Silent p.R1782R 0.15 TCGA-CV-A468-01 6 139094866 139094866 C T CCDC28A Missense_Mutation p.P19S 0.06 tolerated_low_confidence(0.34) benign(0.008) TCGA-CV-A468-01 6 152737755 152737755 G A SYNE1 Silent p.I1939I 0.06 TCGA-CV-A468-01 6 160232744 160232744 C A PNLDC1 Missense_Mutation p.Q278K 0.08 deleterious(0.03) benign(0.385) TCGA-CV-A468-01 6 160232745 160232745 A T PNLDC1 Missense_Mutation p.Q278L 0.07 deleterious(0.01) benign(0.073) TCGA-CV-A468-01 6 161173292 161173292 G A PLG Silent p.Q757Q 0.10 TCGA-CV-A468-01 6 30672641 30672641 G A MDC1 Missense_Mutation p.S1440F 0.05 deleterious(0.03) benign(0.02) TCGA-CV-A468-01 6 30709056 30709056 G A FLOT1 Silent p.L89L 0.06 TCGA-CV-A468-01 6 30890007 30890007 C T VARS2 Missense_Mutation p.P671S 0.08 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 6 33137856 33137856 C T COL11A2 Missense_Mutation p.G1116S 0.05 unknown(0) TCGA-CV-A468-01 6 33246189 33246189 C T B3GALT4 Silent p.S331S 0.06 TCGA-CV-A468-01 6 33658769 33658769 C T ITPR3 Silent p.L2370L 0.06 TCGA-CV-A468-01 6 38899708 38899708 C T DNAH8 Missense_Mutation p.T3582I 0.06 probably_damaging(1) TCGA-CV-A468-01 6 39082853 39082853 A G SAYSD1 Silent p.L5L 0.09 TCGA-CV-A468-01 6 43472550 43472550 G A TJAP1 Missense_Mutation p.E211K 0.04 tolerated(0.24) possibly_damaging(0.547) TCGA-CV-A468-01 6 70071204 70071204 C T BAI3 Missense_Mutation p.P1347S 0.05 tolerated(0.07) benign(0.014) TCGA-CV-A468-01 6 72889506 72889506 C T RIMS1 Missense_Mutation p.P234S 0.05 tolerated(0.39) benign(0.006) TCGA-CV-A468-01 6 76023186 76023186 G A FILIP1 Missense_Mutation p.P788S 0.05 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 6 80744798 80744798 G A TTK Missense_Mutation p.E571K 0.05 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 6 83847818 83847818 G A DOPEY1 Missense_Mutation p.G1353R 0.08 deleterious(0.01) possibly_damaging(0.536) TCGA-CV-A468-01 6 83847819 83847819 G A DOPEY1 Missense_Mutation p.G1353E 0.08 deleterious(0.01) benign(0.269) TCGA-CV-A468-01 6 90440563 90440563 C T MDN1 Silent p.K1674K 0.05 TCGA-CV-A468-01 6 94120848 94120848 A T EPHA7 Missense_Mutation p.I68K 0.08 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 7 103180643 103180643 C T RELN Splice_Site p.X2310_splice 0.06 TCGA-CV-A468-01 7 108137032 108137032 G C PNPLA8 Missense_Mutation p.L541V 0.06 deleterious(0) probably_damaging(0.987) TCGA-CV-A468-01 7 121652102 121652102 C T PTPRZ1 Missense_Mutation p.S1001F 0.04 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-A468-01 7 123101542 123101542 G A IQUB Missense_Mutation p.R626C 0.10 deleterious(0) probably_damaging(0.998) TCGA-CV-A468-01 7 144060432 144060432 C T ARHGEF5 Missense_Mutation p.P224S 0.03 tolerated(0.28) benign(0.03) TCGA-CV-A468-01 7 150935357 150935357 C T CHPF2 Missense_Mutation p.P637S 0.09 tolerated(0.17) benign(0.009) TCGA-CV-A468-01 7 154875986 154875986 G A HTR5A Missense_Mutation p.G288D 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 7 18067268 18067268 C T PRPS1L1 Silent p.E46E 0.07 TCGA-CV-A468-01 7 27142178 27142178 G A HOXA2 5'UTR 0.09 TCGA-CV-A468-01 7 30084777 30084777 T C PLEKHA8 Silent p.G39G 0.07 TCGA-CV-A468-01 7 4259832 4259832 C T SDK1 Silent p.F1877F 0.07 TCGA-CV-A468-01 7 55863612 55863612 C T SEPT14 Silent p.K431K 0.10 TCGA-CV-A468-01 7 73933772 73933772 C T GTF2IRD1 Silent p.A245A 0.04 TCGA-CV-A468-01 7 7612474 7612474 C T MIOS Missense_Mutation p.P123L 0.05 deleterious(0) possibly_damaging(0.614) TCGA-CV-A468-01 7 8178638 8178638 C T ICA1 Missense_Mutation p.G332D 0.06 tolerated(0.63) benign(0.001) TCGA-CV-A468-01 7 89939476 89939476 C T C7orf63 Missense_Mutation p.P917L 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-A468-01 7 94056539 94056539 C T COL1A2 Missense_Mutation p.R1067C 0.12 unknown(0) TCGA-CV-A468-01 7 99696329 99696329 G A MCM7 Missense_Mutation p.P198S 0.05 tolerated(0.17) benign(0.052) TCGA-CV-A468-01 8 101059788 101059788 G A RGS22 Missense_Mutation p.P576S 0.15 tolerated(0.3) benign(0.007) TCGA-CV-A468-01 8 104922645 104922645 G A RIMS2 Intron 0.10 TCGA-CV-A468-01 8 105361229 105361229 G A DCSTAMP Nonsense_Mutation p.W150* 0.05 TCGA-CV-A468-01 8 106813734 106813734 C T ZFPM2 Missense_Mutation p.S475F 0.09 deleterious(0) probably_damaging(0.998) TCGA-CV-A468-01 8 108970359 108970359 T C RSPO2 Missense_Mutation p.T189A 0.10 tolerated(0.52) possibly_damaging(0.743) TCGA-CV-A468-01 8 110477319 110477319 C T PKHD1L1 Missense_Mutation p.A2753V 0.12 deleterious(0.01) benign(0.314) TCGA-CV-A468-01 8 124243864 124243864 G A C8orf76 Missense_Mutation p.P164L 0.07 deleterious(0) probably_damaging(0.978) TCGA-CV-A468-01 8 124665031 124665031 G A KLHL38 Missense_Mutation p.P46S 0.11 tolerated(0.11) possibly_damaging(0.895) TCGA-CV-A468-01 8 131792969 131792969 C T ADCY8 Silent p.K1141K 0.10 TCGA-CV-A468-01 8 134034304 134034304 G A TG Silent p.P2315P 0.05 TCGA-CV-A468-01 8 139158236 139158236 C T FAM135B Missense_Mutation p.G1169E 0.05 deleterious(0.04) possibly_damaging(0.771) TCGA-CV-A468-01 8 139164952 139164952 C T FAM135B Missense_Mutation p.R589K 0.08 tolerated(0.37) benign(0.003) TCGA-CV-A468-01 8 144663268 144663268 C G EEF1D Missense_Mutation p.E482Q 0.06 deleterious(0) probably_damaging(0.979) TCGA-CV-A468-01 8 144990493 144990493 G A PLEC Missense_Mutation p.A4636V 0.16 unknown(0) TCGA-CV-A468-01 8 144995082 144995082 C T PLEC Silent p.K3106K 0.23 TCGA-CV-A468-01 8 145657756 145657756 C T TONSL Missense_Mutation p.G1216D 0.10 tolerated(0.54) benign(0.018) TCGA-CV-A468-01 8 145657757 145657757 C T TONSL Missense_Mutation p.G1216S 0.10 tolerated(0.61) benign(0) TCGA-CV-A468-01 8 145746089 145746089 C T LRRC14 Missense_Mutation p.S266F 0.15 tolerated(0.09) possibly_damaging(0.663) TCGA-CV-A468-01 8 15601076 15601076 C T TUSC3 Silent p.L298L 0.05 TCGA-CV-A468-01 8 1808169 1808169 C T ARHGEF10 Silent p.F100F 0.05 TCGA-CV-A468-01 8 19709309 19709309 T A INTS10 Missense_Mutation p.L709Q 0.09 deleterious(0) probably_damaging(0.992) TCGA-CV-A468-01 8 21857054 21857054 C T XPO7 Missense_Mutation p.P884L 0.05 deleterious(0.01) possibly_damaging(0.835) TCGA-CV-A468-01 8 52366183 52366183 C T PXDNL Missense_Mutation p.G382E 0.11 deleterious(0) probably_damaging(0.972) TCGA-CV-A468-01 8 54978369 54978369 C T LYPLA1 Missense_Mutation p.G36R 0.11 deleterious(0.02) probably_damaging(0.968) TCGA-CV-A468-01 8 55541555 55541555 G A RP1 Missense_Mutation p.D1705N 0.12 tolerated(0.15) benign(0.006) TCGA-CV-A468-01 8 56879311 56879311 C T LYN Silent p.T276T 0.07 TCGA-CV-A468-01 8 57079617 57079617 G A PLAG1 Nonsense_Mutation p.R230* 0.13 TCGA-CV-A468-01 8 57080774 57080774 G A PLAG1 Missense_Mutation p.P19S 0.07 tolerated(0.15) probably_damaging(0.968) TCGA-CV-A468-01 8 57080775 57080775 G A PLAG1 Silent p.V18V 0.07 TCGA-CV-A468-01 8 62496584 62496584 C T ASPH Silent p.K327K 0.14 TCGA-CV-A468-01 8 67790890 67790890 C T MCMDC2 Missense_Mutation p.A188V 0.05 tolerated(0.05) benign(0.046) TCGA-CV-A468-01 8 69058492 69058492 T A PREX2 Missense_Mutation p.V1379D 0.12 deleterious(0) possibly_damaging(0.58) TCGA-CV-A468-01 8 73849534 73849534 C T KCNB2 Silent p.G648G 0.05 TCGA-CV-A468-01 8 74526035 74526035 G A STAU2 Missense_Mutation p.P279S 0.09 tolerated(0.08) benign(0.026) TCGA-CV-A468-01 8 87479131 87479131 T A WWP1 3'UTR 0.08 TCGA-CV-A468-01 9 101340229 101340229 C T GABBR2 Nonsense_Mutation p.W149* 0.06 TCGA-CV-A468-01 9 101822189 101822189 C T COL15A1 Missense_Mutation p.P1119L 0.07 deleterious(0) probably_damaging(0.994) TCGA-CV-A468-01 9 107266781 107266781 C T OR13F1 Missense_Mutation p.P80S 0.06 tolerated(0.54) probably_damaging(0.998) TCGA-CV-A468-01 9 107560849 107560849 G A ABCA1 Silent p.S1658S 0.07 TCGA-CV-A468-01 9 111618191 111618191 G A ACTL7B Missense_Mutation p.P7L 0.06 deleterious_low_confidence(0) benign(0.012) TCGA-CV-A468-01 9 111903842 111903842 G A FRRS1L Missense_Mutation p.H215Y 0.08 tolerated(0.12) benign(0.14) TCGA-CV-A468-01 9 112899178 112899178 G A PALM2-AKAP2 Missense_Mutation p.E452K 0.08 deleterious(0) probably_damaging(0.998) TCGA-CV-A468-01 9 112900112 112900112 C T PALM2-AKAP2 Missense_Mutation p.P763L 0.05 deleterious(0.04) benign(0.059) TCGA-CV-A468-01 9 113265469 113265469 C T SVEP1 Silent p.P444P 0.08 TCGA-CV-A468-01 9 116811378 116811378 T C ZNF618 Missense_Mutation p.V506A 0.10 deleterious(0.04) benign(0.045) TCGA-CV-A468-01 9 120475061 120475061 C T TLR4 Nonsense_Mutation p.Q219* 0.10 TCGA-CV-A468-01 9 121976141 121976141 C T BRINP1 Intron 0.07 TCGA-CV-A468-01 9 124929171 124929171 T A MORN5 Missense_Mutation p.W58R 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 9 125281824 125281824 C T OR1J4 Silent p.I135I 0.10 TCGA-CV-A468-01 9 125315733 125315733 C T OR1N2 Silent p.I95I 0.06 TCGA-CV-A468-01 9 125391097 125391097 G A OR1B1 Missense_Mutation p.R240C 0.05 tolerated(0.16) benign(0.077) TCGA-CV-A468-01 9 125391445 125391445 G A OR1B1 Missense_Mutation p.R124C 0.07 deleterious(0.04) possibly_damaging(0.886) TCGA-CV-A468-01 9 131596036 131596036 G A CCBL1 Missense_Mutation p.R398C 0.09 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 9 134386815 134386815 C T POMT1 Missense_Mutation p.P338L 0.08 deleterious(0) probably_damaging(0.918) TCGA-CV-A468-01 9 135458563 135458563 G A BARHL1 Missense_Mutation p.G127S 0.08 tolerated(0.48) benign(0.009) TCGA-CV-A468-01 9 139100648 139100648 G A QSOX2 Missense_Mutation p.L675F 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 9 139100649 139100649 G A QSOX2 Silent p.F674F 0.07 TCGA-CV-A468-01 9 140669656 140669656 C A EHMT1 Silent p.R581R 0.09 TCGA-CV-A468-01 9 14808075 14808075 C T FREM1 Missense_Mutation p.G984E 0.16 tolerated(0.19) benign(0.013) TCGA-CV-A468-01 9 15971895 15971895 G A CCDC171 3'UTR 0.16 TCGA-CV-A468-01 9 16435641 16435641 G A BNC2 Missense_Mutation p.H851Y 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-CV-A468-01 9 214736 214736 C T C9orf66 Missense_Mutation p.G221R 0.29 tolerated_low_confidence(0.21) benign(0.001) TCGA-CV-A468-01 9 34657100 34657100 C T IL11RA Missense_Mutation p.P134S 0.09 tolerated(0.57) benign(0.02) TCGA-CV-A468-01 9 35061120 35061120 C T VCP Silent p.E417E 0.08 TCGA-CV-A468-01 9 35061622 35061622 C T VCP Silent p.Q382Q 0.14 TCGA-CV-A468-01 9 36122984 36122984 C T RECK Missense_Mutation p.S953F 0.10 tolerated(0.7) benign(0) TCGA-CV-A468-01 9 6007476 6007476 G A KIAA2026 Silent p.P104P 0.13 TCGA-CV-A468-01 9 79229442 79229442 G A PRUNE2 3'UTR 0.09 TCGA-CV-A468-01 9 8331682 8331682 C T PTPRD Missense_Mutation p.G1812R 0.14 deleterious(0.04) probably_damaging(1) TCGA-CV-A468-01 9 86616879 86616879 C T RMI1 Silent p.V326V 0.09 TCGA-CV-A468-01 9 93650034 93650034 C T SYK Nonsense_Mutation p.Q529* 0.09 TCGA-CV-A468-01 9 95179095 95179095 G A OMD Missense_Mutation p.P249L 0.06 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 9 95795139 95795139 C T FGD3 Missense_Mutation p.A590V 0.05 tolerated(0.84) benign(0.004) TCGA-CV-A468-01 X 100533088 100533088 C T TAF7L Missense_Mutation p.E262K 0.13 deleterious(0) probably_damaging(0.996) TCGA-CV-A468-01 X 101395946 101395946 C T TCEAL6 Missense_Mutation p.D120N 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A468-01 X 10188788 10188788 C T CLCN4 Missense_Mutation p.P688L 0.09 deleterious(0.02) benign(0.012) TCGA-CV-A468-01 X 107977075 107977075 C T IRS4 Missense_Mutation p.G834R 0.08 tolerated(0.06) unknown(0) TCGA-CV-A468-01 X 109696197 109696197 C T RGAG1 Silent p.L784L 0.07 TCGA-CV-A468-01 X 117960077 117960077 G A ZCCHC12 Nonsense_Mutation p.W290* 0.11 TCGA-CV-A468-01 X 118220904 118220904 C T KIAA1210 Missense_Mutation p.G1430E 0.07 tolerated(0.24) probably_damaging(0.984) TCGA-CV-A468-01 X 118220998 118220998 C T KIAA1210 Missense_Mutation p.G1399R 0.07 deleterious(0.04) benign(0) TCGA-CV-A468-01 X 120008750 120008750 C T CT47B1 Missense_Mutation p.E259K 0.05 tolerated(0.14) unknown(0) TCGA-CV-A468-01 X 12728536 12728536 G A FRMPD4 Missense_Mutation p.E497K 0.05 deleterious(0) probably_damaging(0.987) TCGA-CV-A468-01 X 129156917 129156917 C T BCORL1 Missense_Mutation p.P1218L 0.08 probably_damaging(0.999) TCGA-CV-A468-01 X 151821029 151821029 G A GABRQ Missense_Mutation p.G395E 0.08 tolerated(1) benign(0.007) TCGA-CV-A468-01 X 152813321 152813321 G A ATP2B3 Missense_Mutation p.M329I 0.10 tolerated(0.19) benign(0.152) TCGA-CV-A468-01 X 153694154 153694154 G A PLXNA3 Silent p.Q832Q 0.11 TCGA-CV-A468-01 X 18213472 18213472 C T BEND2 Missense_Mutation p.G375E 0.10 tolerated(0.12) possibly_damaging(0.896) TCGA-CV-A468-01 X 24757589 24757589 A G POLA1 Missense_Mutation p.H707R 0.14 deleterious(0.04) possibly_damaging(0.449) TCGA-CV-A468-01 X 35974158 35974158 C T CXorf22 Missense_Mutation p.L419F 0.08 tolerated(0.47) benign(0.163) TCGA-CV-A468-01 X 41027468 41027468 C T USP9X Missense_Mutation p.S878L 0.11 tolerated(0.61) probably_damaging(0.945) TCGA-CV-A468-01 X 53561067 53561067 A C HUWE1 Missense_Mutation p.L4308R 0.12 unknown(0) TCGA-CV-A468-01 X 73045957 73045957 C T XIST RNA 0.07 TCGA-CV-A468-01 X 76938082 76938082 G A ATRX Missense_Mutation p.S889F 0.08 benign(0.002) TCGA-CV-A468-01 X 77286941 77286941 G A ATP7A Missense_Mutation p.G1052E 0.05 deleterious(0) probably_damaging(1) TCGA-CV-A468-01 X 91133258 91133258 C T PCDH11X Silent p.F673F 0.08 TCGA-CV-A6JD-01 10 51592529 51592529 C T TIMM23 Missense_Mutation p.G202D 0.20 tolerated(0.11) benign(0.037) TCGA-CV-A6JD-01 11 118373361 118373361 C T KMT2A Missense_Mutation p.P2252S 0.16 benign(0.002) TCGA-CV-A6JD-01 11 119031072 119031072 G A ABCG4 Missense_Mutation p.G525R 0.41 deleterious(0) probably_damaging(0.987) TCGA-CV-A6JD-01 11 123624313 123624313 C A OR6X1 Missense_Mutation p.C305F 0.15 tolerated(0.7) benign(0.003) TCGA-CV-A6JD-01 11 17741780 17741780 C T MYOD1 Missense_Mutation p.R151C 0.16 deleterious(0) probably_damaging(0.984) TCGA-CV-A6JD-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.40 deleterious(0) probably_damaging(0.992) TCGA-CV-A6JD-01 11 55563925 55563925 C T OR5D14 Silent p.D298D 0.22 TCGA-CV-A6JD-01 11 57114139 57114139 G A P2RX3 Missense_Mutation p.V81M 0.35 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JD-01 11 7110628 7110628 C T RBMXL2 Missense_Mutation p.R93W 0.56 tolerated(0.06) possibly_damaging(0.689) TCGA-CV-A6JD-01 11 71724462 71724462 C T NUMA1 Missense_Mutation p.A1363T 0.31 benign(0.341) TCGA-CV-A6JD-01 11 73064048 73064048 C T ARHGEF17 Silent p.L1148L 0.26 TCGA-CV-A6JD-01 11 76796060 76796060 G A CAPN5 Missense_Mutation p.G43D 0.12 tolerated(0.58) benign(0.012) TCGA-CV-A6JD-01 11 8751710 8751710 G T ST5 Nonsense_Mutation p.S376* 0.26 TCGA-CV-A6JD-01 12 113770537 113770537 G A SLC8B1 Silent p.P49P 0.22 TCGA-CV-A6JD-01 12 16055941 16055941 A G STRAP 3'UTR 0.19 TCGA-CV-A6JD-01 12 4657910 4657910 C T RAD51AP1 Missense_Mutation p.A172V 0.32 deleterious(0) possibly_damaging(0.797) TCGA-CV-A6JD-01 12 69115632 69115632 C T NUP107 Silent p.V441V 0.36 TCGA-CV-A6JD-01 12 7047737 7047737 A G ATN1 Missense_Mutation p.T871A 0.33 probably_damaging(0.982) TCGA-CV-A6JD-01 13 25840048 25840048 C T MTMR6 Missense_Mutation p.R167Q 0.29 tolerated(0.33) benign(0.003) TCGA-CV-A6JD-01 13 67205374 67205374 G T PCDH9 Missense_Mutation p.T1103N 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-CV-A6JD-01 14 104174902 104174902 C T XRCC3 Silent p.L50L 0.41 TCGA-CV-A6JD-01 14 52477629 52477629 C T NID2 Silent p.V1229V 0.29 TCGA-CV-A6JD-01 14 62551041 62551041 G A SYT16 Missense_Mutation p.R521Q 0.31 deleterious(0.05) probably_damaging(0.929) TCGA-CV-A6JD-01 14 74360533 74360533 C T ZNF410 Missense_Mutation p.P23S 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CV-A6JD-01 15 101906469 101906469 T C PCSK6 Missense_Mutation p.K596R 0.06 tolerated(0.48) benign(0.012) TCGA-CV-A6JD-01 16 31012508 31012508 C A STX1B Nonsense_Mutation p.E38* 0.42 TCGA-CV-A6JD-01 16 5115822 5115822 C T C16orf89 Missense_Mutation p.E30K 0.21 tolerated(0.13) possibly_damaging(0.711) TCGA-CV-A6JD-01 16 89986383 89986383 C T MC1R Silent p.G239G 0.33 TCGA-CV-A6JD-01 17 13400053 13400053 G A HS3ST3A1 Missense_Mutation p.R228C 0.18 deleterious(0.01) probably_damaging(0.939) TCGA-CV-A6JD-01 17 34951506 34951506 C T DHRS11 Missense_Mutation p.R85C 0.24 tolerated(0.06) benign(0.033) TCGA-CV-A6JD-01 17 4445797 4445797 C T MYBBP1A Missense_Mutation p.V1017I 0.21 tolerated(0.19) benign(0.041) TCGA-CV-A6JD-01 17 4799584 4799584 C A MINK1 Missense_Mutation p.H1188N 0.28 deleterious(0) probably_damaging(0.994) TCGA-CV-A6JD-01 17 7578508 7578508 C A TP53 Missense_Mutation p.C141F 0.38 deleterious(0) probably_damaging(1) TCGA-CV-A6JD-01 17 7579313 7579313 G A TP53 Missense_Mutation p.T125M 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-CV-A6JD-01 19 13941880 13941880 G A ZSWIM4 3'UTR 0.34 TCGA-CV-A6JD-01 19 18368707 18368707 C T KIAA1683 Silent p.A1129A 0.26 TCGA-CV-A6JD-01 19 38160804 38160804 A G ZNF781 Silent p.T82T 0.29 TCGA-CV-A6JD-01 19 42814088 42814088 C G PRR19 Missense_Mutation p.P118A 0.37 tolerated(0.75) benign(0.048) TCGA-CV-A6JD-01 19 47844467 47844467 C T C5AR2 Silent p.L137L 0.24 TCGA-CV-A6JD-01 19 49536263 49536263 G A CGB2 Missense_Mutation p.G93S 0.30 deleterious(0.02) probably_damaging(0.974) TCGA-CV-A6JD-01 19 50909674 50909674 G A POLD1 Missense_Mutation p.R465Q 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-CV-A6JD-01 1 156235606 156235606 G A SMG5 Silent p.C607C 0.29 TCGA-CV-A6JD-01 1 156622194 156622194 C T BCAN Silent p.S484S 0.44 TCGA-CV-A6JD-01 1 156640278 156640278 C T NES Silent p.G1234G 0.30 TCGA-CV-A6JD-01 1 158687883 158687883 G A OR6K3 Missense_Mutation p.T8I 0.24 tolerated(0.16) benign(0.002) TCGA-CV-A6JD-01 1 16532081 16532081 G A ARHGEF19 Silent p.F511F 0.55 TCGA-CV-A6JD-01 1 214557023 214557023 G - PTPN14 Frame_Shift_Del p.M726Cfs*34 0.24 TCGA-CV-A6JD-01 1 29585137 29585137 G A PTPRU Missense_Mutation p.R109Q 0.61 tolerated(0.07) probably_damaging(0.992) TCGA-CV-A6JD-01 1 6266754 6266754 G A RNF207 Silent p.A53A 0.23 TCGA-CV-A6JD-01 20 40733281 40733281 G T PTPRT Missense_Mutation p.F1156L 0.29 tolerated(0.37) probably_damaging(0.913) TCGA-CV-A6JD-01 20 47261018 47261018 C T PREX1 Missense_Mutation p.R1177Q 0.30 deleterious(0.01) possibly_damaging(0.621) TCGA-CV-A6JD-01 20 50139653 50139654 GG T NFATC2 Frame_Shift_Del p.P376Tfs*15 0.23 TCGA-CV-A6JD-01 20 58519756 58519756 A G FAM217B Missense_Mutation p.H253R 0.31 tolerated(0.43) benign(0.005) TCGA-CV-A6JD-01 21 40559107 40559107 G A BRWD1 Nonsense_Mutation p.R2270* 0.33 TCGA-CV-A6JD-01 22 23626220 23626220 G T BCR Missense_Mutation p.K724N 0.17 deleterious(0.02) possibly_damaging(0.887) TCGA-CV-A6JD-01 22 39918110 39918110 G A ATF4 Missense_Mutation p.D187N 0.45 deleterious(0.01) benign(0.249) TCGA-CV-A6JD-01 22 41569760 41569760 T C EP300 Missense_Mutation p.L1584P 0.29 probably_damaging(0.999) TCGA-CV-A6JD-01 2 132290593 132290593 G A CCDC74A Missense_Mutation p.E320K 0.17 deleterious(0) probably_damaging(0.983) TCGA-CV-A6JD-01 2 179537157 179537157 T A TTN Missense_Mutation p.K11636M 0.27 TCGA-CV-A6JD-01 2 189850437 189850437 G A COL3A1 Missense_Mutation p.G127E 0.12 unknown(0) TCGA-CV-A6JD-01 2 202151283 202151283 C T CASP8 Missense_Mutation p.T528I 0.20 deleterious(0) possibly_damaging(0.881) TCGA-CV-A6JD-01 2 206037056 206037056 G A PARD3B Missense_Mutation p.R519Q 0.36 deleterious(0) probably_damaging(1) TCGA-CV-A6JD-01 2 54570915 54570915 C A C2orf73 Missense_Mutation p.S98Y 0.32 deleterious(0.01) possibly_damaging(0.528) TCGA-CV-A6JD-01 2 88474336 88474336 C T THNSL2 Silent p.H134H 0.21 TCGA-CV-A6JD-01 2 96811088 96811088 C A DUSP2 Silent p.G2G 0.18 TCGA-CV-A6JD-01 3 108391474 108391474 G A DZIP3 Missense_Mutation p.A854T 0.26 tolerated(0.27) benign(0.011) TCGA-CV-A6JD-01 3 121305359 121305359 T C ARGFX Missense_Mutation p.M287T 0.28 tolerated(0.15) benign(0.002) TCGA-CV-A6JD-01 3 156870850 156870850 C T CCNL1 Missense_Mutation p.C195Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-CV-A6JD-01 3 184019655 184019655 C A PSMD2 Missense_Mutation p.A167D 0.30 deleterious(0.01) benign(0.347) TCGA-CV-A6JD-01 3 194149619 194149619 A G ATP13A3 Missense_Mutation p.F968L 0.30 tolerated(0.08) possibly_damaging(0.452) TCGA-CV-A6JD-01 3 62258702 62258702 C - PTPRG Frame_Shift_Del p.L1089Wfs*4 0.19 TCGA-CV-A6JD-01 3 62258703 62258703 C T PTPRG Silent p.L1089L 0.20 TCGA-CV-A6JD-01 4 114254240 114254240 G A ANK2 Silent p.A1085A 0.62 TCGA-CV-A6JD-01 4 187630542 187630542 G A FAT1 Missense_Mutation p.P147L 0.55 probably_damaging(1) TCGA-CV-A6JD-01 4 57189692 57189692 G T KIAA1211 Missense_Mutation p.A1113S 0.42 deleterious(0.01) possibly_damaging(0.567) TCGA-CV-A6JD-01 4 70160421 70160421 G T UGT2B28 Missense_Mutation p.G495V 0.26 deleterious(0.02) possibly_damaging(0.764) TCGA-CV-A6JD-01 4 77274320 77274320 G A CCDC158 Missense_Mutation p.R801C 0.25 tolerated(0.06) probably_damaging(0.995) TCGA-CV-A6JD-01 4 77660200 77660200 C T SHROOM3 Nonsense_Mutation p.R292* 0.22 TCGA-CV-A6JD-01 4 83785613 83785613 G A SEC31A Nonsense_Mutation p.Q446* 0.24 TCGA-CV-A6JD-01 4 85642584 85642584 C T WDFY3 Missense_Mutation p.R2528H 0.28 deleterious(0.03) benign(0.434) TCGA-CV-A6JD-01 5 139937913 139937913 G A APBB3 3'UTR 0.40 TCGA-CV-A6JD-01 5 148577823 148577823 A G ABLIM3 Missense_Mutation p.N65D 0.27 tolerated(0.09) benign(0.314) TCGA-CV-A6JD-01 5 150436431 150436431 G A TNIP1 Missense_Mutation p.P175S 0.18 tolerated(0.59) benign(0.06) TCGA-CV-A6JD-01 5 161494960 161494960 C A GABRG2 5'UTR 0.29 TCGA-CV-A6JD-01 5 45353264 45353264 A G HCN1 Missense_Mutation p.Y439H 0.30 deleterious(0.01) probably_damaging(0.911) TCGA-CV-A6JD-01 6 29394621 29394621 G T OR11A1 Silent p.V266V 0.20 TCGA-CV-A6JD-01 6 31324917 31324917 G A HLA-B Nonsense_Mutation p.R7* 0.52 TCGA-CV-A6JD-01 6 73900322 73900322 G A KCNQ5 Missense_Mutation p.R554Q 0.26 deleterious(0) probably_damaging(0.991) TCGA-CV-A6JD-01 6 87725712 87725712 G A HTR1E Silent p.R220R 0.28 TCGA-CV-A6JD-01 7 129096483 129096483 G T STRIP2 Missense_Mutation p.R346S 0.36 deleterious(0.04) benign(0.026) TCGA-CV-A6JD-01 7 6441974 6441974 C T RAC1 Missense_Mutation p.A178V 0.29 deleterious(0) probably_damaging(0.986) TCGA-CV-A6JD-01 7 77973170 77973170 C T MAGI2 Missense_Mutation p.E445K 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A6JD-01 8 113347648 113347648 A G CSMD3 Silent p.L2359L 0.30 TCGA-CV-A6JD-01 8 143960853 143960854 - TGCA CYP11B1 Intron 0.41 TCGA-CV-A6JD-01 8 144917992 144917992 C T NRBP2 Missense_Mutation p.E479K 0.65 tolerated(0.07) possibly_damaging(0.67) TCGA-CV-A6JD-01 8 145738640 145738640 G A RECQL4 Silent p.D808D 0.39 TCGA-CV-A6JD-01 9 100076680 100076680 G A CCDC180 Missense_Mutation p.M199I 0.22 tolerated(0.1) benign(0.159) TCGA-CV-A6JD-01 9 130207515 130207515 C T ZNF79 3'UTR 0.04 TCGA-CV-A6JD-01 9 131696336 131696336 C T PHYHD1 Silent p.H105H 0.23 TCGA-CV-A6JD-01 9 136633698 136633698 C T VAV2 Missense_Mutation p.G819S 0.18 tolerated(0.1) benign(0.265) TCGA-CV-A6JD-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.49 TCGA-CV-A6JD-01 9 35811864 35811884 GCTGCAGCAGCTGATGCAGCC - SPAG8 In_Frame_Del p.A54_A60del 0.23 TCGA-CV-A6JD-01 9 87339194 87339194 A G NTRK2 Missense_Mutation p.D259G 0.18 tolerated(0.32) probably_damaging(0.999) TCGA-CV-A6JD-01 X 100087838 100087838 C A CSTF2 Missense_Mutation p.L383I 0.32 deleterious(0.01) benign(0.138) TCGA-CV-A6JD-01 X 114141284 114141284 C T HTR2C Missense_Mutation p.T228M 0.30 tolerated(0.13) benign(0.24) TCGA-CV-A6JD-01 X 150889866 150889866 G A FATE1 Splice_Site p.X79_splice 0.26 TCGA-CV-A6JD-01 X 46887486 46887486 G T JADE3 Missense_Mutation p.C223F 0.31 deleterious(0) probably_damaging(1) TCGA-CV-A6JD-01 X 49957167 49957167 T C AKAP4 Missense_Mutation p.K733E 0.27 tolerated(0.95) benign(0.091) TCGA-CV-A6JD-01 X 53241082 53241083 - A KDM5C Frame_Shift_Ins p.K377* 0.21 TCGA-CV-A6JD-01 X 54955077 54955077 C T TRO Silent p.R640R 0.14 TCGA-CV-A6JD-01 X 70517748 70517748 G A NONO Missense_Mutation p.R364Q 0.29 tolerated(0.09) benign(0) TCGA-CV-A6JE-01 10 104140401 104140401 C T GBF1 Missense_Mutation p.P1710S 0.37 deleterious(0) probably_damaging(1) TCGA-CV-A6JE-01 10 118969450 118969450 C T KCNK18 Silent p.I265I 0.21 TCGA-CV-A6JE-01 10 123987498 123987498 G A TACC2 Missense_Mutation p.G2624D 0.40 probably_damaging(0.982) TCGA-CV-A6JE-01 10 38246453 38246453 C G ZNF25 Missense_Mutation p.V13L 0.07 deleterious(0.03) benign(0.273) TCGA-CV-A6JE-01 10 52389598 52389598 C T RP11-50E11.3 RNA 0.43 TCGA-CV-A6JE-01 10 52595898 52595898 G A A1CF Silent p.G188G 0.33 TCGA-CV-A6JE-01 10 70166628 70166628 C T RUFY2 5'UTR 0.29 TCGA-CV-A6JE-01 10 73053606 73053606 G T UNC5B Silent p.L697L 0.23 TCGA-CV-A6JE-01 10 73551006 73551006 T C CDH23 5'Flank 0.10 TCGA-CV-A6JE-01 11 1093644 1093644 G A MUC2 Silent p.T1821T 0.36 TCGA-CV-A6JE-01 11 124564308 124564308 G A SPA17 Missense_Mutation p.S141N 0.47 tolerated(0.42) benign(0.001) TCGA-CV-A6JE-01 11 31822284 31822284 G C PAX6 Missense_Mutation p.P174A 0.36 tolerated(0.34) benign(0.001) TCGA-CV-A6JE-01 11 58940169 58940169 T A DTX4 Missense_Mutation p.V34D 0.22 deleterious(0) benign(0.356) TCGA-CV-A6JE-01 11 62521470 62521470 C G ZBTB3 Missense_Mutation p.R22T 0.15 deleterious_low_confidence(0) benign(0.023) TCGA-CV-A6JE-01 11 62591660 62591660 C G STX5 Missense_Mutation p.E296Q 0.19 deleterious(0) probably_damaging(0.98) TCGA-CV-A6JE-01 11 64884705 64884705 C G ZNHIT2 Missense_Mutation p.E141Q 0.16 tolerated(0.64) benign(0.13) TCGA-CV-A6JE-01 11 66192413 66192413 G C NPAS4 Silent p.L684L 0.30 TCGA-CV-A6JE-01 11 6648162 6648162 G C DCHS1 Silent p.L2036L 0.23 TCGA-CV-A6JE-01 11 66625314 66625314 C G LRFN4 Silent p.L33L 0.12 TCGA-CV-A6JE-01 11 7064875 7064875 C G NLRP14 Missense_Mutation p.R540G 0.15 tolerated(0.14) benign(0.329) TCGA-CV-A6JE-01 11 76877187 76877187 C A MYO7A Silent p.I592I 0.53 TCGA-CV-A6JE-01 11 89405088 89405088 C T FOLH1B RNA 0.43 TCGA-CV-A6JE-01 11 92532589 92532589 G T FAT3 Missense_Mutation p.G2137V 0.47 probably_damaging(1) TCGA-CV-A6JE-01 12 107395078 107395078 C T CRY1 Missense_Mutation p.E222K 0.10 deleterious(0.04) possibly_damaging(0.876) TCGA-CV-A6JE-01 12 123950460 123950460 G T SNRNP35 Missense_Mutation p.D130Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JE-01 12 12630855 12630856 - T DUSP16 Frame_Shift_Ins p.A304Sfs*18 0.11 TCGA-CV-A6JE-01 12 3757780 3757780 C A EFCAB4B Splice_Site p.X349_splice 0.23 TCGA-CV-A6JE-01 12 51717927 51717927 C T BIN2 5'UTR 0.24 TCGA-CV-A6JE-01 12 51845919 51845919 C T SLC4A8 Nonsense_Mutation p.Q97* 0.33 TCGA-CV-A6JE-01 12 56427056 56427056 G A IKZF4 Silent p.L316L 0.40 TCGA-CV-A6JE-01 12 8197435 8197435 A G FOXJ2 Missense_Mutation p.Y233C 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-CV-A6JE-01 12 93968681 93968681 C A SOCS2 Missense_Mutation p.S108Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JE-01 13 50594352 50594352 A T KCNRG Missense_Mutation p.Y194F 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-CV-A6JE-01 13 53422460 53422460 C G PCDH8 Missense_Mutation p.E38Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JE-01 14 20841549 20841549 G A TEP1 Missense_Mutation p.H2232Y 0.48 tolerated(0.28) probably_damaging(0.937) TCGA-CV-A6JE-01 14 21960698 21960698 C - TOX4 Frame_Shift_Del p.A308Dfs*25 0.13 TCGA-CV-A6JE-01 14 25043673 25043673 C T CTSG Silent p.V124V 0.22 TCGA-CV-A6JE-01 14 51204924 51204924 T C NIN Silent p.Q1903Q 0.48 TCGA-CV-A6JE-01 14 64497902 64497902 A T SYNE2 Nonsense_Mutation p.K2350* 0.64 TCGA-CV-A6JE-01 14 74538942 74538942 G C ALDH6A1 Silent p.V104V 0.51 TCGA-CV-A6JE-01 14 74539000 74539000 G A ALDH6A1 Missense_Mutation p.S85F 0.45 deleterious(0.01) possibly_damaging(0.863) TCGA-CV-A6JE-01 14 77576214 77576214 G A CIPC Missense_Mutation p.A66T 0.35 tolerated(0.35) benign(0.004) TCGA-CV-A6JE-01 14 86088559 86088559 A T FLRT2 Missense_Mutation p.E234V 0.42 deleterious(0) possibly_damaging(0.869) TCGA-CV-A6JE-01 14 92058278 92058278 C G CATSPERB Missense_Mutation p.Q926H 0.26 tolerated(0.1) benign(0.031) TCGA-CV-A6JE-01 14 93119130 93119130 G T RIN3 Missense_Mutation p.R579L 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-CV-A6JE-01 15 100211533 100211533 A T MEF2A Intron 0.14 TCGA-CV-A6JE-01 15 35275437 35275437 G C ZNF770 Missense_Mutation p.L67V 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-CV-A6JE-01 15 42137412 42137412 C A PLA2G4B Missense_Mutation p.H648Q 0.31 tolerated(0.26) benign(0.439) TCGA-CV-A6JE-01 15 42149831 42149831 G C SPTBN5 Silent p.L2768L 0.31 TCGA-CV-A6JE-01 15 43527720 43527721 - GGCT TGM5 Frame_Shift_Ins p.P554Qfs*18 0.32 TCGA-CV-A6JE-01 15 45879650 45879650 C A BLOC1S6 Silent p.V3V 0.60 TCGA-CV-A6JE-01 15 72190746 72190746 T C MYO9A Silent p.K1366K 0.49 TCGA-CV-A6JE-01 15 73615004 73615004 C T HCN4 Missense_Mutation p.A1144T 0.36 deleterious_low_confidence(0.01) benign(0.403) TCGA-CV-A6JE-01 15 91438811 91438811 T A FES 3'UTR 0.16 TCGA-CV-A6JE-01 15 93482923 93482923 C G CHD2 Missense_Mutation p.R223G 0.36 deleterious(0.01) benign(0.083) TCGA-CV-A6JE-01 16 24802570 24802570 C A TNRC6A Silent p.A869A 0.38 TCGA-CV-A6JE-01 16 3819250 3819250 C T CREBBP Silent p.L995L 0.20 TCGA-CV-A6JE-01 16 3900762 3900762 T C CREBBP Missense_Mutation p.M112V 0.27 benign(0.024) TCGA-CV-A6JE-01 16 53913760 53913760 C G FTO Nonsense_Mutation p.S327* 0.37 TCGA-CV-A6JE-01 16 88927342 88927342 C T TRAPPC2L Missense_Mutation p.T133M 0.38 tolerated(0.25) benign(0.01) TCGA-CV-A6JE-01 17 18565202 18565203 - A ZNF286B 3'UTR 0.27 TCGA-CV-A6JE-01 17 28598379 28598379 G C BLMH Silent p.V352V 0.43 TCGA-CV-A6JE-01 17 38955842 38955842 C T KRT28 Missense_Mutation p.D102N 0.21 tolerated(0.06) benign(0.17) TCGA-CV-A6JE-01 17 42927771 42927772 - A HIGD1B 3'UTR 0.23 TCGA-CV-A6JE-01 17 7189832 7189832 C T SLC2A4 Nonsense_Mutation p.R472* 0.19 TCGA-CV-A6JE-01 17 72916692 72916692 C A USH1G Missense_Mutation p.C80F 0.19 deleterious(0) probably_damaging(0.952) TCGA-CV-A6JE-01 17 7577098 7577098 T A TP53 Missense_Mutation p.R280S 0.39 deleterious(0.03) possibly_damaging(0.646) TCGA-CV-A6JE-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A6JE-01 18 33607167 33607167 G T RPRD1A Missense_Mutation p.S198Y 0.26 deleterious(0) probably_damaging(0.95) TCGA-CV-A6JE-01 19 10262217 10262217 G A DNMT1 Missense_Mutation p.P708S 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-CV-A6JE-01 19 10444839 10444839 C G ICAM3 Missense_Mutation p.E480Q 0.07 tolerated(0.8) benign(0) TCGA-CV-A6JE-01 19 12878892 12878892 C T HOOK2 Missense_Mutation p.E384K 0.34 deleterious(0) benign(0.435) TCGA-CV-A6JE-01 19 14938943 14938943 G C OR7A5 Silent p.V37V 0.33 TCGA-CV-A6JE-01 19 42839203 42839203 G A MEGF8 Missense_Mutation p.R192H 0.10 tolerated(0.16) benign(0.319) TCGA-CV-A6JE-01 19 43979519 43979519 G A PHLDB3 3'UTR 0.52 TCGA-CV-A6JE-01 19 4499511 4499511 G A HDGFRP2 Silent p.K533K 0.29 TCGA-CV-A6JE-01 19 50357788 50357788 C T PTOV1 Silent p.L99L 0.31 TCGA-CV-A6JE-01 19 51217438 51217438 C T SHANK1 Splice_Site p.X214_splice 0.47 TCGA-CV-A6JE-01 19 51628875 51628875 T A SIGLEC9 Missense_Mutation p.I148N 0.42 deleterious(0) probably_damaging(0.981) TCGA-CV-A6JE-01 19 54758896 54758896 C G LILRB5 Silent p.L319L 0.10 TCGA-CV-A6JE-01 19 56485171 56485171 T A NLRP8 Nonsense_Mutation p.C896* 0.49 TCGA-CV-A6JE-01 19 9089884 9089884 G A MUC16 Missense_Mutation p.T644M 0.22 unknown(0) TCGA-CV-A6JE-01 1 120466420 120466420 G A NOTCH2 Missense_Mutation p.R1567W 0.08 deleterious(0.01) probably_damaging(1) TCGA-CV-A6JE-01 1 14105784 14105784 G C PRDM2 Missense_Mutation p.M498I 0.28 probably_damaging(0.999) TCGA-CV-A6JE-01 1 150785759 150785759 C T ARNT Silent p.V723V 0.16 TCGA-CV-A6JE-01 1 161953740 161953740 T C OLFML2B Missense_Mutation p.K660E 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-CV-A6JE-01 1 16945765 16945765 C A RP5-1182A14.5 3'Flank 0.17 TCGA-CV-A6JE-01 1 201869122 201869122 G C LMOD1 Nonsense_Mutation p.S340* 0.25 TCGA-CV-A6JE-01 1 207857216 207857216 G C CR1L Splice_Site p.X126_splice 0.35 TCGA-CV-A6JE-01 1 212530321 212530321 C T PPP2R5A Silent p.I336I 0.22 TCGA-CV-A6JE-01 1 226485424 226485424 T G LIN9 Missense_Mutation p.E68A 0.20 tolerated_low_confidence(0.06) benign(0.095) TCGA-CV-A6JE-01 1 229606349 229606349 G A NUP133 Missense_Mutation p.P685L 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-CV-A6JE-01 1 236706280 236706280 T G LGALS8 Missense_Mutation p.D205E 0.14 tolerated(0.64) benign(0.074) TCGA-CV-A6JE-01 1 26227483 26227483 G C STMN1 Intron 0.26 TCGA-CV-A6JE-01 1 27099395 27099395 A G ARID1A Missense_Mutation p.Y1211C 0.26 unknown(0) TCGA-CV-A6JE-01 1 29069499 29069499 G A YTHDF2 Nonsense_Mutation p.W239* 0.32 TCGA-CV-A6JE-01 1 29069845 29069845 C T YTHDF2 Missense_Mutation p.R355W 0.27 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JE-01 1 33059037 33059037 G C ZBTB8A Missense_Mutation p.E169Q 0.28 benign(0.216) TCGA-CV-A6JE-01 1 46487694 46487694 A C MAST2 Missense_Mutation p.K455Q 0.23 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CV-A6JE-01 1 55062944 55062944 G C ACOT11 Missense_Mutation p.R207T 0.45 tolerated(0.4) benign(0.045) TCGA-CV-A6JE-01 1 60456431 60456431 G C C1orf87 Missense_Mutation p.Q519E 0.12 tolerated(0.16) benign(0.008) TCGA-CV-A6JE-01 1 90484319 90484319 A G ZNF326 Missense_Mutation p.I384V 0.35 tolerated(0.31) benign(0.033) TCGA-CV-A6JE-01 1 9097522 9097522 G A SLC2A5 3'UTR 0.31 TCGA-CV-A6JE-01 1 9097783 9097783 G T SLC2A5 Silent p.I456I 0.29 TCGA-CV-A6JE-01 20 35748155 35748155 G C MROH8 Silent p.L799L 0.19 TCGA-CV-A6JE-01 20 44463731 44463731 C T SNX21 Silent p.V141V 0.18 TCGA-CV-A6JE-01 20 61957463 61957463 G C COL20A1 Missense_Mutation p.E1140Q 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-CV-A6JE-01 20 62560822 62560822 C G DNAJC5 Missense_Mutation p.Q89E 0.33 deleterious(0) possibly_damaging(0.887) TCGA-CV-A6JE-01 20 7920950 7920950 A T HAO1 Missense_Mutation p.N40K 0.32 deleterious(0) probably_damaging(1) TCGA-CV-A6JE-01 21 11021189 11021189 G C BAGE2 RNA 0.07 TCGA-CV-A6JE-01 22 21272519 21272519 C G CRKL Missense_Mutation p.I99M 0.59 deleterious(0.01) benign(0.315) TCGA-CV-A6JE-01 22 32756746 32756746 G A RFPL3S Missense_Mutation p.P98S 0.18 possibly_damaging(0.81) TCGA-CV-A6JE-01 22 39710765 39710766 - A RPL3 Frame_Shift_Ins p.P259Sfs*21 0.11 TCGA-CV-A6JE-01 2 101869656 101869656 A T CNOT11 Missense_Mutation p.E77V 0.37 tolerated(0.09) benign(0.348) TCGA-CV-A6JE-01 2 136570329 136570329 G A LCT Silent p.V635V 0.12 TCGA-CV-A6JE-01 2 141762944 141762944 G A LRP1B Silent p.A821A 0.26 TCGA-CV-A6JE-01 2 197863748 197863748 C T ANKRD44 Missense_Mutation p.D825N 0.53 tolerated(0.21) benign(0.007) TCGA-CV-A6JE-01 2 25457210 25457210 A G DNMT3A Missense_Mutation p.W893R 0.44 deleterious(0) probably_damaging(1) TCGA-CV-A6JE-01 2 27592363 27592363 C G EIF2B4 Missense_Mutation p.K64N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6JE-01 2 39090566 39090566 T A DHX57 Missense_Mutation p.N107I 0.46 deleterious(0.04) probably_damaging(0.973) TCGA-CV-A6JE-01 2 44001199 44001199 C T DYNC2LI1 5'UTR 0.33 TCGA-CV-A6JE-01 2 69759275 69759275 T A AAK1 Missense_Mutation p.H185L 0.12 deleterious(0) unknown(0) TCGA-CV-A6JE-01 3 100962873 100962873 G A IMPG2 Missense_Mutation p.P768S 0.39 tolerated(0.13) benign(0.026) TCGA-CV-A6JE-01 3 172473109 172473109 G A ECT2 Missense_Mutation p.R52K 0.19 deleterious(0.04) probably_damaging(0.989) TCGA-CV-A6JE-01 3 195936327 195936327 G A ZDHHC19 Missense_Mutation p.R110C 0.19 deleterious(0.02) benign(0.189) TCGA-CV-A6JE-01 3 197562650 197562650 C T LRCH3 Missense_Mutation p.S403L 0.39 deleterious(0) benign(0.149) TCGA-CV-A6JE-01 3 20142948 20142948 A T KAT2B Missense_Mutation p.E280V 0.40 tolerated(1) benign(0.002) TCGA-CV-A6JE-01 3 38950665 38950665 G A SCN11A Silent p.L374L 0.05 TCGA-CV-A6JE-01 4 110448567 110448567 A G SEC24B Missense_Mutation p.I1019V 0.46 tolerated(0.84) benign(0.002) TCGA-CV-A6JE-01 4 155275 155275 C G ZNF718 RNA 0.27 TCGA-CV-A6JE-01 4 187538223 187538223 G C FAT1 Nonsense_Mutation p.S3004* 0.31 TCGA-CV-A6JE-01 4 2209864 2209864 C T POLN Silent p.G188G 0.19 TCGA-CV-A6JE-01 4 22390433 22390433 T A GPR125 Missense_Mutation p.E954V 0.11 deleterious(0.04) probably_damaging(1) TCGA-CV-A6JE-01 4 22390434 22390434 C T GPR125 Missense_Mutation p.E954K 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-CV-A6JE-01 4 22694613 22694613 G A GBA3 5'UTR 0.20 TCGA-CV-A6JE-01 4 3415846 3415846 A G RGS12 Missense_Mutation p.S690G 0.38 deleterious(0.01) possibly_damaging(0.708) TCGA-CV-A6JE-01 5 140021368 140021368 C T TMCO6 Intron 0.40 TCGA-CV-A6JE-01 5 158141128 158141128 G C EBF1 Missense_Mutation p.N396K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.777) TCGA-CV-A6JE-01 5 639244 639244 C T CEP72 Missense_Mutation p.T416M 0.11 tolerated(0.07) possibly_damaging(0.563) TCGA-CV-A6JE-01 5 65077118 65077118 T A NLN Nonsense_Mutation p.L231* 0.61 TCGA-CV-A6JE-01 5 65077119 65077119 A T NLN Missense_Mutation p.L231F 0.61 deleterious(0) possibly_damaging(0.66) TCGA-CV-A6JE-01 5 65077120 65077120 G A NLN Missense_Mutation p.E232K 0.61 tolerated(0.09) benign(0.042) TCGA-CV-A6JE-01 5 96244818 96244818 C G ERAP2 Silent p.L722L 0.51 TCGA-CV-A6JE-01 6 135521286 135521286 C G MYB Missense_Mutation p.F591L 0.30 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JE-01 6 136560842 136560842 G A MTFR2 Missense_Mutation p.P211S 0.24 deleterious(0.03) probably_damaging(0.913) TCGA-CV-A6JE-01 6 13978077 13978077 A G RNF182 Missense_Mutation p.M243V 0.07 tolerated(0.88) benign(0) TCGA-CV-A6JE-01 6 149862095 149862095 C T PPIL4 Missense_Mutation p.D102N 0.37 tolerated(1) benign(0.016) TCGA-CV-A6JE-01 6 27778027 27778027 C G HIST1H3H Missense_Mutation p.T59S 0.20 tolerated_low_confidence(0.08) benign(0.023) TCGA-CV-A6JE-01 6 31778361 31778361 C T HSPA1L Silent p.L463L 0.33 TCGA-CV-A6JE-01 6 48036107 48036107 G A PTCHD4 Silent p.D95D 0.31 TCGA-CV-A6JE-01 6 56480344 56480344 C T DST Intron 0.29 TCGA-CV-A6JE-01 6 70070781 70070781 C T BAI3 Missense_Mutation p.P1206S 0.12 tolerated(0.32) benign(0.001) TCGA-CV-A6JE-01 6 7230870 7230870 G T RREB1 Missense_Mutation p.E846D 0.40 tolerated(0.21) benign(0.017) TCGA-CV-A6JE-01 6 82950285 82950285 T C IBTK 5'UTR 0.15 TCGA-CV-A6JE-01 6 96969791 96969791 C A UFL1 Missense_Mutation p.D14E 0.18 tolerated(0.22) probably_damaging(0.915) TCGA-CV-A6JE-01 7 22768412 22768412 C G IL6 Missense_Mutation p.S104C 0.36 deleterious(0.01) probably_damaging(0.948) TCGA-CV-A6JE-01 7 26224794 26224794 A G NFE2L3 Silent p.Q492Q 0.38 TCGA-CV-A6JE-01 7 95705417 95705417 G A DYNC1I1 Missense_Mutation p.D537N 0.05 deleterious(0.03) possibly_damaging(0.747) TCGA-CV-A6JE-01 7 97823729 97823729 G A LMTK2 Missense_Mutation p.V1318M 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JE-01 7 98503829 98503829 G C TRRAP Missense_Mutation p.D356H 0.08 benign(0.058) TCGA-CV-A6JE-01 8 124664564 124664565 CA - KLHL38 Frame_Shift_Del p.M201Sfs*6 0.26 TCGA-CV-A6JE-01 8 132991091 132991091 C T EFR3A Intron 0.23 TCGA-CV-A6JE-01 8 132991143 132991143 C G EFR3A Missense_Mutation p.S459C 0.24 deleterious(0.01) possibly_damaging(0.646) TCGA-CV-A6JE-01 8 134024224 134024225 - T TG Frame_Shift_Ins p.V2115Cfs*24 0.50 TCGA-CV-A6JE-01 9 104171753 104171753 A G ZNF189 Missense_Mutation p.Y568C 0.54 deleterious(0) probably_damaging(0.982) TCGA-CV-A6JE-01 9 107599734 107599734 G A ABCA1 Missense_Mutation p.P390L 0.55 deleterious(0.02) probably_damaging(0.926) TCGA-CV-A6JE-01 9 117399281 117399281 C G C9orf91 Silent p.V199V 0.62 TCGA-CV-A6JE-01 9 21971096 21971096 C - CDKN2A Frame_Shift_Del p.E88Rfs*58 0.41 TCGA-CV-A6JE-01 9 97401431 97401431 G A FBP1 Silent p.I54I 0.54 TCGA-CV-A6JE-01 X 128963075 128963075 T C ZDHHC9 Silent p.V70V 0.77 TCGA-CV-A6JE-01 X 13767612 13767612 A T OFD1 Nonsense_Mutation p.R299* 0.73 TCGA-CV-A6JE-01 X 141290636 141290636 G T MAGEC2 3'UTR 0.21 TCGA-CV-A6JE-01 X 153663828 153663828 C G ATP6AP1 Missense_Mutation p.Q394E 0.16 tolerated(0.32) benign(0.002) TCGA-CV-A6JE-01 X 17818381 17818381 G A RAI2 3'UTR 0.79 TCGA-CV-A6JE-01 X 19379786 19379786 A G PDHA1 3'UTR 0.80 TCGA-CV-A6JE-01 X 44918553 44918553 C T KDM6A Nonsense_Mutation p.Q346* 0.69 TCGA-CV-A6JE-01 X 66765955 66765955 G C AR Missense_Mutation p.E323Q 0.82 deleterious_low_confidence(0.05) possibly_damaging(0.787) TCGA-CV-A6JE-01 X 70814620 70814620 G C ACRC Missense_Mutation p.R71T 0.44 possibly_damaging(0.587) TCGA-CV-A6JE-01 X 84526391 84526391 A G ZNF711 Missense_Mutation p.K615E 0.79 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6JE-01 X 86919900 86919900 G C KLHL4 Missense_Mutation p.E688Q 0.67 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JE-01 X 91133664 91133664 G A PCDH11X Missense_Mutation p.D809N 0.77 tolerated(0.05) probably_damaging(0.995) TCGA-CV-A6JM-01 10 105363418 105363418 C T SH3PXD2A Silent p.R491R 0.06 TCGA-CV-A6JM-01 10 114057948 114057948 G C TECTB Missense_Mutation p.E265Q 0.24 deleterious(0.05) probably_damaging(1) TCGA-CV-A6JM-01 10 118215233 118215234 - A PNLIPRP3 Frame_Shift_Ins p.F155Ifs*2 0.32 TCGA-CV-A6JM-01 10 120354659 120354659 G A PRLHR Missense_Mutation p.S33L 0.34 tolerated(0.35) benign(0) TCGA-CV-A6JM-01 10 126715679 126715679 C T CTBP2 Missense_Mutation p.R217K 0.35 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-CV-A6JM-01 10 127512149 127512149 G T BCCIP Missense_Mutation p.R8L 0.29 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-CV-A6JM-01 10 13275760 13275760 C T UCMA Silent p.Q33Q 0.50 TCGA-CV-A6JM-01 10 15639277 15639277 C T ITGA8 Missense_Mutation p.E714K 0.48 tolerated(0.48) possibly_damaging(0.85) TCGA-CV-A6JM-01 10 29775131 29775131 G C SVIL Silent p.L1554L 0.05 TCGA-CV-A6JM-01 10 43015853 43015853 G A ZNF37BP RNA 0.67 TCGA-CV-A6JM-01 10 44139569 44139569 C T ZNF32 Missense_Mutation p.G251R 0.11 deleterious(0.02) probably_damaging(0.957) TCGA-CV-A6JM-01 10 50955215 50955215 C G OGDHL Missense_Mutation p.E343Q 0.31 tolerated(0.2) benign(0.14) TCGA-CV-A6JM-01 10 51464978 51464978 A T AGAP7 Missense_Mutation p.V493E 0.14 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JM-01 10 61833210 61833210 G T ANK3 Missense_Mutation p.H2477N 0.30 benign(0.007) TCGA-CV-A6JM-01 10 64573737 64573737 G A EGR2 Missense_Mutation p.P221S 0.28 tolerated(0.44) benign(0.001) TCGA-CV-A6JM-01 10 69948683 69948683 G C MYPN Missense_Mutation p.E909Q 0.41 deleterious(0.01) possibly_damaging(0.638) TCGA-CV-A6JM-01 10 81317178 81317178 C T SFTPA2 Silent p.V178V 0.31 TCGA-CV-A6JM-01 10 90122397 90122397 C T RNLS Silent p.T204T 0.18 TCGA-CV-A6JM-01 10 93940750 93940750 G A CPEB3 Missense_Mutation p.P398S 0.15 deleterious(0.02) benign(0.119) TCGA-CV-A6JM-01 11 113934355 113934355 C A ZBTB16 Silent p.I111I 0.69 TCGA-CV-A6JM-01 11 123900696 123900696 C G OR10G8 Missense_Mutation p.L123V 0.27 tolerated(0.8) benign(0.226) TCGA-CV-A6JM-01 11 1262589 1262589 C T MUC5B Silent p.V1493V 0.27 TCGA-CV-A6JM-01 11 3428827 3428827 C G TSSC2 RNA 0.34 TCGA-CV-A6JM-01 11 376088 376088 C T B4GALNT4 Silent p.F370F 0.14 TCGA-CV-A6JM-01 11 44286499 44286499 C T ALX4 Missense_Mutation p.E381K 0.24 tolerated(0.06) benign(0.17) TCGA-CV-A6JM-01 11 46894661 46894661 C T LRP4 Missense_Mutation p.D1525N 0.29 tolerated(0.13) benign(0.092) TCGA-CV-A6JM-01 11 55036718 55036718 G A TRIM48 Silent p.R193R 0.76 TCGA-CV-A6JM-01 11 61069779 61069779 C T DDB1 Silent p.Q1055Q 0.21 TCGA-CV-A6JM-01 11 62343619 62343619 C T TUT1 Silent p.G562G 0.11 TCGA-CV-A6JM-01 11 62363555 62363555 G A MTA2 Silent p.I347I 0.26 TCGA-CV-A6JM-01 11 62763267 62763267 C T SLC22A8 Missense_Mutation p.E304K 0.20 deleterious(0.01) possibly_damaging(0.825) TCGA-CV-A6JM-01 11 63420016 63420016 G A ATL3 Missense_Mutation p.A146V 0.48 deleterious(0.01) possibly_damaging(0.796) TCGA-CV-A6JM-01 11 63764862 63764862 C T OTUB1 Silent p.I220I 0.23 TCGA-CV-A6JM-01 11 63970956 63970956 C T STIP1 Missense_Mutation p.A474V 0.49 tolerated(0.14) benign(0.042) TCGA-CV-A6JM-01 11 64502685 64502685 G T RASGRP2 Missense_Mutation p.N437K 0.22 deleterious(0) possibly_damaging(0.811) TCGA-CV-A6JM-01 11 65271069 65271069 C T MALAT1 RNA 0.22 TCGA-CV-A6JM-01 11 65383851 65383851 C T PCNXL3 Silent p.F23F 0.28 TCGA-CV-A6JM-01 11 68030356 68030356 C G C11orf24 Missense_Mutation p.G36A 0.12 tolerated(0.34) unknown(0) TCGA-CV-A6JM-01 11 74056608 74056608 C T PGM2L1 Missense_Mutation p.R375K 0.16 tolerated(0.73) benign(0) TCGA-CV-A6JM-01 11 77048372 77048372 G T PAK1 Missense_Mutation p.L405I 0.71 tolerated(0.11) probably_damaging(0.973) TCGA-CV-A6JM-01 11 77961252 77961252 C T GAB2 Missense_Mutation p.E191K 0.58 deleterious(0.01) benign(0.199) TCGA-CV-A6JM-01 11 82643899 82643899 G T C11orf82 Missense_Mutation p.V507F 0.68 deleterious(0.03) possibly_damaging(0.668) TCGA-CV-A6JM-01 11 9187469 9187469 G C DENND5A Missense_Mutation p.P733A 0.35 tolerated(0.1) possibly_damaging(0.566) TCGA-CV-A6JM-01 12 102542110 102542110 G A PARPBP Missense_Mutation p.D86N 0.18 tolerated(0.05) benign(0.057) TCGA-CV-A6JM-01 12 11546051 11546051 G C PRB2 Missense_Mutation p.P321A 0.42 tolerated_low_confidence(0.42) unknown(0) TCGA-CV-A6JM-01 12 120636945 120636945 G A RPLP0 Silent p.I98I 0.15 TCGA-CV-A6JM-01 12 123054275 123054275 C G KNTC1 Silent p.L588L 0.29 TCGA-CV-A6JM-01 12 124796441 124796441 C T FAM101A Silent p.I14I 0.31 TCGA-CV-A6JM-01 12 24736326 24736326 C T LINC00477 RNA 0.28 TCGA-CV-A6JM-01 12 34175388 34175388 C G ALG10 5'UTR 0.24 TCGA-CV-A6JM-01 12 48238503 48238503 C T VDR 3'UTR 0.28 TCGA-CV-A6JM-01 12 49170117 49170117 G A ADCY6 Missense_Mutation p.R518W 0.25 deleterious(0.05) benign(0.016) TCGA-CV-A6JM-01 12 49225034 49225034 G C DDX23 Silent p.L710L 0.27 TCGA-CV-A6JM-01 12 49420274 49420274 G A KMT2D Missense_Mutation p.R5159W 0.32 unknown(0) TCGA-CV-A6JM-01 12 51467696 51467696 G A CSRNP2 Silent p.L107L 0.34 TCGA-CV-A6JM-01 12 52685278 52685278 G A KRT81 5'UTR 0.24 TCGA-CV-A6JM-01 12 6105333 6105333 G A VWF Silent p.F1966F 0.59 TCGA-CV-A6JM-01 12 62261181 62261181 G A FAM19A2 Missense_Mutation p.A9V 0.26 tolerated_low_confidence(0.53) benign(0.003) TCGA-CV-A6JM-01 12 6975200 6975200 G A USP5 Missense_Mutation p.D846N 0.12 deleterious(0.04) probably_damaging(0.986) TCGA-CV-A6JM-01 12 6975313 6975313 G T USP5 3'UTR 0.15 TCGA-CV-A6JM-01 12 7046047 7046047 G C ATN1 Silent p.L539L 0.44 TCGA-CV-A6JM-01 12 85450284 85450284 G A LRRIQ1 Silent p.E571E 0.32 TCGA-CV-A6JM-01 12 89917768 89917768 C G GALNT4 Missense_Mutation p.E187Q 0.32 deleterious(0.04) probably_damaging(0.95) TCGA-CV-A6JM-01 13 100037588 100037588 G A UBAC2 Silent p.%3D 0.47 TCGA-CV-A6JM-01 13 101944607 101944607 T C NALCN Missense_Mutation p.T304A 0.42 deleterious(0.01) possibly_damaging(0.893) TCGA-CV-A6JM-01 13 101944608 101944608 G T NALCN Silent p.I303I 0.41 TCGA-CV-A6JM-01 13 102227846 102227846 G A ITGBL1 Missense_Mutation p.E179K 0.20 deleterious(0.03) possibly_damaging(0.885) TCGA-CV-A6JM-01 13 25283535 25283535 G A ATP12A Missense_Mutation p.E849K 0.42 deleterious(0.02) benign(0.281) TCGA-CV-A6JM-01 13 50296663 50296663 G A KPNA3 Missense_Mutation p.P169L 0.62 deleterious(0.03) benign(0.016) TCGA-CV-A6JM-01 13 53010427 53010427 C G VPS36 Missense_Mutation p.E117Q 0.36 tolerated(0.12) benign(0.2) TCGA-CV-A6JM-01 13 66879068 66879068 G A PCDH9 Missense_Mutation p.P1145S 0.75 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JM-01 13 73305435 73305435 G C BORA Missense_Mutation p.R57T 0.14 tolerated(0.11) possibly_damaging(0.691) TCGA-CV-A6JM-01 13 77765925 77765925 T C MYCBP2 Missense_Mutation p.D1282G 0.64 probably_damaging(0.971) TCGA-CV-A6JM-01 14 101421722 101421722 C T SNORD114-5 RNA 0.22 TCGA-CV-A6JM-01 14 105420855 105420855 C T AHNAK2 Silent p.Q311Q 0.12 TCGA-CV-A6JM-01 14 23415864 23415864 C A HAUS4 Missense_Mutation p.R321I 0.23 deleterious(0) possibly_damaging(0.831) TCGA-CV-A6JM-01 14 23450722 23450723 - G AJUBA Frame_Shift_Ins p.E253Gfs*53 0.75 TCGA-CV-A6JM-01 14 23852493 23852493 C T MYH6 Missense_Mutation p.D1868N 0.43 deleterious(0.01) probably_damaging(0.923) TCGA-CV-A6JM-01 14 45433339 45433339 G C FAM179B Missense_Mutation p.R572T 0.11 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JM-01 14 50053085 50053085 G A RPS29 5'UTR 0.16 TCGA-CV-A6JM-01 14 58838607 58838607 C A ARID4A Missense_Mutation p.S1225Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JM-01 14 63269276 63269276 G T KCNH5 Missense_Mutation p.D531E 0.53 deleterious(0.01) possibly_damaging(0.849) TCGA-CV-A6JM-01 14 71455407 71455407 C T PCNX Missense_Mutation p.S812L 0.09 deleterious(0) benign(0.384) TCGA-CV-A6JM-01 14 73412678 73412678 G T DCAF4 Silent p.L207L 0.42 TCGA-CV-A6JM-01 14 74083767 74083767 C T ACOT6 5'UTR 0.37 TCGA-CV-A6JM-01 14 96852101 96852101 G C GSKIP 3'UTR 0.14 TCGA-CV-A6JM-01 14 96998720 96998720 C T PAPOLA Silent p.F220F 0.15 TCGA-CV-A6JM-01 15 100942945 100942945 G A CERS3 Silent p.L375L 0.11 TCGA-CV-A6JM-01 15 102297127 102297127 C T DNM1P47 RNA 0.23 TCGA-CV-A6JM-01 15 23412207 23412207 T C RP11-467N20.5 Missense_Mutation p.I84V 0.06 possibly_damaging(0.831) TCGA-CV-A6JM-01 15 23812438 23812438 C T MKRN3 Silent p.F503F 0.14 TCGA-CV-A6JM-01 15 25449420 25449420 G T SNORD115-20 5'Flank 0.46 TCGA-CV-A6JM-01 15 25924962 25924962 C T ATP10A Silent p.R1342R 0.30 TCGA-CV-A6JM-01 15 71341787 71341787 G A LRRC49 Missense_Mutation p.E638K 0.40 tolerated(0.47) benign(0.002) TCGA-CV-A6JM-01 15 72579719 72579719 C T CELF6 Missense_Mutation p.D445N 0.28 deleterious(0) benign(0.177) TCGA-CV-A6JM-01 15 74277772 74277772 G A STOML1 Missense_Mutation p.P226L 0.45 deleterious(0) possibly_damaging(0.69) TCGA-CV-A6JM-01 15 76031525 76031525 G A AC019294.1 3'UTR 0.27 TCGA-CV-A6JM-01 15 90904219 90904219 G A ZNF774 Missense_Mutation p.D386N 0.24 tolerated(0.36) probably_damaging(0.965) TCGA-CV-A6JM-01 15 91835659 91835659 C T SV2B Silent p.T643T 0.16 TCGA-CV-A6JM-01 15 99653797 99653797 G C SYNM Missense_Mutation p.R270T 0.48 deleterious(0) possibly_damaging(0.894) TCGA-CV-A6JM-01 16 1413113 1413113 G A GNPTG 3'UTR 0.42 TCGA-CV-A6JM-01 16 18849386 18849386 C G SMG1 Missense_Mutation p.E2455Q 0.13 deleterious(0) probably_damaging(0.979) TCGA-CV-A6JM-01 16 2127659 2127659 C T TSC2 Silent p.F966F 0.25 TCGA-CV-A6JM-01 16 2345606 2345606 C T ABCA3 Missense_Mutation p.R800K 0.24 tolerated(1) benign(0) TCGA-CV-A6JM-01 16 23678400 23678400 C T DCTN5 Nonsense_Mutation p.Q162* 0.16 TCGA-CV-A6JM-01 16 26147614 26147614 C T HS3ST4 3'UTR 0.29 TCGA-CV-A6JM-01 16 2817149 2817149 G C SRRM2 Missense_Mutation p.R2207T 0.27 probably_damaging(0.989) TCGA-CV-A6JM-01 16 31075256 31075256 C G ZNF668 Missense_Mutation p.K198N 0.33 deleterious(0) probably_damaging(0.98) TCGA-CV-A6JM-01 16 31473901 31473901 C T ARMC5 Nonsense_Mutation p.Q345* 0.29 TCGA-CV-A6JM-01 16 3452266 3452266 C A ZNF174 Missense_Mutation p.L88I 0.22 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JM-01 16 4519347 4519347 C T NMRAL1 Missense_Mutation p.V54I 0.22 deleterious(0.04) benign(0.014) TCGA-CV-A6JM-01 16 4750786 4750786 C T ANKS3 Intron 0.21 TCGA-CV-A6JM-01 16 57796128 57796128 C T KIFC3 Missense_Mutation p.E558K 0.73 deleterious(0) possibly_damaging(0.86) TCGA-CV-A6JM-01 16 716533 716533 G A WDR90 Missense_Mutation p.D1607N 0.21 tolerated(0.15) benign(0.003) TCGA-CV-A6JM-01 16 84520527 84520527 G A TLDC1 Missense_Mutation p.S223L 0.67 tolerated(0.18) benign(0.014) TCGA-CV-A6JM-01 16 89627382 89627382 G C RPL13 Silent p.R5R 0.57 TCGA-CV-A6JM-01 17 10204996 10204996 A G MYH13 Missense_Mutation p.S1898P 0.26 deleterious(0) possibly_damaging(0.583) TCGA-CV-A6JM-01 17 16012157 16012157 G A NCOR1 Nonsense_Mutation p.Q709* 0.33 TCGA-CV-A6JM-01 17 1747901 1747901 C T RPA1 Missense_Mutation p.L65F 0.19 tolerated(0.06) benign(0.193) TCGA-CV-A6JM-01 17 17722719 17722719 G A SREBF1 Missense_Mutation p.A284V 0.32 deleterious(0) benign(0.279) TCGA-CV-A6JM-01 17 26727562 26727562 G T SARM1 3'UTR 0.33 TCGA-CV-A6JM-01 17 3422127 3422127 C T TRPV3 Missense_Mutation p.E610K 0.24 tolerated(0.25) possibly_damaging(0.822) TCGA-CV-A6JM-01 17 37687641 37687641 G A CDK12 3'UTR 0.43 TCGA-CV-A6JM-01 17 3850986 3850986 G A ATP2A3 Missense_Mutation p.S265F 0.33 tolerated(0.17) benign(0.056) TCGA-CV-A6JM-01 17 39684170 39684170 C T KRT19 Silent p.V110V 0.24 TCGA-CV-A6JM-01 17 42271732 42271732 G C ATXN7L3 Missense_Mutation p.L322V 0.21 tolerated_low_confidence(0.19) benign(0.088) TCGA-CV-A6JM-01 17 42288225 42288225 G A UBTF Missense_Mutation p.L432F 0.46 tolerated(0.05) probably_damaging(0.925) TCGA-CV-A6JM-01 17 43220990 43220990 G A ACBD4 Silent p.L336L 0.25 TCGA-CV-A6JM-01 17 56604060 56604060 G C SEPT4 Missense_Mutation p.P129A 0.06 deleterious(0.02) probably_damaging(1) TCGA-CV-A6JM-01 17 57762435 57762435 G A CLTC Missense_Mutation p.D1485N 0.19 tolerated(0.06) benign(0.096) TCGA-CV-A6JM-01 17 57970560 57970560 G A RPS6KB1 Silent p.R5R 0.19 TCGA-CV-A6JM-01 17 60673966 60673966 G A TLK2 Missense_Mutation p.R494Q 0.16 tolerated(0.15) benign(0.334) TCGA-CV-A6JM-01 17 61791450 61791450 C G STRADA Missense_Mutation p.E48Q 0.21 tolerated(0.19) possibly_damaging(0.756) TCGA-CV-A6JM-01 17 62559052 62559052 T A SMURF2 Missense_Mutation p.Q350L 0.34 tolerated(0.27) benign(0.002) TCGA-CV-A6JM-01 17 63010817 63010817 T A GNA13 Missense_Mutation p.K231I 0.32 deleterious(0) possibly_damaging(0.537) TCGA-CV-A6JM-01 17 65671646 65671646 G C PITPNC1 Missense_Mutation p.D224H 0.18 deleterious(0) probably_damaging(0.997) TCGA-CV-A6JM-01 17 65717547 65717547 G A NOL11 Silent p.V122V 0.17 TCGA-CV-A6JM-01 17 73654511 73654511 G T RECQL5 Missense_Mutation p.S339Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JM-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.39 deleterious(0) probably_damaging(1) TCGA-CV-A6JM-01 17 7578463 7578464 - GGGT TP53 Frame_Shift_Ins p.R156Hfs*26 0.16 TCGA-CV-A6JM-01 17 7809901 7809901 G T CHD3 Silent p.L1522L 0.27 TCGA-CV-A6JM-01 17 79618095 79618095 G T PDE6G 3'UTR 0.08 TCGA-CV-A6JM-01 17 80130728 80130728 G A CCDC57 Silent p.L505L 0.29 TCGA-CV-A6JM-01 18 11752440 11752440 G A GNAL Intron 0.25 TCGA-CV-A6JM-01 18 14851927 14851927 T A ANKRD30B Silent p.A1209A 0.55 TCGA-CV-A6JM-01 18 14851928 14851928 C A ANKRD30B Missense_Mutation p.P1210T 0.52 tolerated(0.39) benign(0.073) TCGA-CV-A6JM-01 18 15316720 15316720 C G RNU6-721P 3'Flank 0.31 TCGA-CV-A6JM-01 18 31538230 31538230 A T NOL4 Silent p.V403V 0.15 TCGA-CV-A6JM-01 18 32438277 32438277 C T DTNA Missense_Mutation p.R434W 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JM-01 18 43469794 43469794 C A EPG5 Nonsense_Mutation p.E1641* 0.07 TCGA-CV-A6JM-01 18 47015633 47015633 C G RPL17-C18orf32 Intron 0.38 TCGA-CV-A6JM-01 18 47812185 47812185 C T CXXC1 Silent p.K191K 0.35 TCGA-CV-A6JM-01 18 51025691 51025691 C T DCC Nonsense_Mutation p.Q1308* 0.17 TCGA-CV-A6JM-01 18 56008370 56008370 G A NEDD4L Missense_Mutation p.R409Q 0.33 deleterious(0.03) probably_damaging(0.92) TCGA-CV-A6JM-01 18 56985727 56985727 C T CPLX4 5'UTR 0.31 TCGA-CV-A6JM-01 18 61225714 61225714 C T SERPINB12 Intron 0.26 TCGA-CV-A6JM-01 18 63477171 63477171 G A CDH7 Missense_Mutation p.D148N 0.17 deleterious(0) probably_damaging(0.985) TCGA-CV-A6JM-01 18 72345099 72345099 G C ZNF407 Missense_Mutation p.K708N 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-CV-A6JM-01 18 77477674 77477674 G A CTDP1 Silent p.Q736Q 0.33 TCGA-CV-A6JM-01 19 1005181 1005181 G A GRIN3B Missense_Mutation p.D561N 0.19 deleterious(0) probably_damaging(0.99) TCGA-CV-A6JM-01 19 10663602 10663602 C T ATG4D Silent p.F428F 0.26 TCGA-CV-A6JM-01 19 12781380 12781380 G T WDR83 Missense_Mutation p.V112L 0.16 deleterious(0.01) benign(0.334) TCGA-CV-A6JM-01 19 12903302 12903302 C T JUNB Silent p.F239F 0.29 TCGA-CV-A6JM-01 19 12985309 12985309 G A MAST1 Silent p.K1446K 0.19 TCGA-CV-A6JM-01 19 14023231 14023231 G A CC2D1A Missense_Mutation p.E98K 0.32 deleterious(0.02) probably_damaging(0.965) TCGA-CV-A6JM-01 19 15490568 15490568 C T AKAP8 5'UTR 0.14 TCGA-CV-A6JM-01 19 18779737 18779737 C T KLHL26 Silent p.I510I 0.22 TCGA-CV-A6JM-01 19 20117530 20117530 C G ZNF682 Missense_Mutation p.E261Q 0.21 deleterious(0.01) possibly_damaging(0.89) TCGA-CV-A6JM-01 19 20308487 20308487 C T ZNF486 Missense_Mutation p.T323M 0.17 deleterious(0) benign(0.011) TCGA-CV-A6JM-01 19 20728688 20728688 T C ZNF737 Silent p.G107G 0.41 TCGA-CV-A6JM-01 19 31768688 31768688 G A TSHZ3 Missense_Mutation p.P671S 0.15 tolerated(0.18) possibly_damaging(0.765) TCGA-CV-A6JM-01 19 36583698 36583698 G A WDR62 Missense_Mutation p.R773Q 0.30 tolerated(0.6) benign(0) TCGA-CV-A6JM-01 19 39517548 39517548 C G FBXO27 Missense_Mutation p.D224H 0.05 tolerated(0.54) possibly_damaging(0.863) TCGA-CV-A6JM-01 19 39998950 39998950 C T DLL3 3'UTR 0.14 TCGA-CV-A6JM-01 19 41026013 41026013 C T SPTBN4 Silent p.L1203L 0.23 TCGA-CV-A6JM-01 19 41063301 41063301 G A SPTBN4 Missense_Mutation p.V1888M 0.15 tolerated(0.22) probably_damaging(0.997) TCGA-CV-A6JM-01 19 41096680 41096681 TG - SHKBP1 Frame_Shift_Del p.C605* 0.28 TCGA-CV-A6JM-01 19 41354558 41354558 C T CYP2A6 Missense_Mutation p.E152K 0.15 benign(0.169) TCGA-CV-A6JM-01 19 41387515 41387515 C G CYP2A7 Missense_Mutation p.D108H 0.09 tolerated(0.06) possibly_damaging(0.856) TCGA-CV-A6JM-01 19 41743859 41743859 C G AXL Nonsense_Mutation p.S265* 0.24 TCGA-CV-A6JM-01 19 42914791 42914791 C G LIPE Missense_Mutation p.D363H 0.19 deleterious(0) probably_damaging(0.992) TCGA-CV-A6JM-01 19 43259296 43259296 G C PSG8 Missense_Mutation p.Q278E 0.07 tolerated(0.36) benign(0.012) TCGA-CV-A6JM-01 19 46543472 46543472 C T IGFL4 Silent p.K91K 0.21 TCGA-CV-A6JM-01 19 49422497 49422497 C T NUCB1 Missense_Mutation p.A319V 0.22 tolerated(0.3) benign(0.012) TCGA-CV-A6JM-01 19 50360312 50360312 C T PTOV1 Silent p.I213I 0.11 TCGA-CV-A6JM-01 19 50368399 50368399 C T PNKP Silent p.V161V 0.31 TCGA-CV-A6JM-01 19 51325104 51325104 G A KLK1 Missense_Mutation p.R24W 0.27 deleterious(0.03) possibly_damaging(0.568) TCGA-CV-A6JM-01 19 54598423 54598423 G T OSCAR 3'UTR 0.40 TCGA-CV-A6JM-01 19 56896032 56896032 C T ZNF582 Missense_Mutation p.E252K 0.18 tolerated(0.07) probably_damaging(0.995) TCGA-CV-A6JM-01 19 57176108 57176108 C T ZNF835 Silent p.L153L 0.24 TCGA-CV-A6JM-01 19 57955243 57955243 C T ZNF749 Nonsense_Mutation p.Q243* 0.15 TCGA-CV-A6JM-01 19 58101637 58101637 C T ZIK1 Missense_Mutation p.S153L 0.13 tolerated(0.11) benign(0.156) TCGA-CV-A6JM-01 19 58806859 58806859 C T ZNF8 Missense_Mutation p.S562F 0.16 tolerated(0.12) possibly_damaging(0.708) TCGA-CV-A6JM-01 19 6476963 6476963 G A DENND1C Silent p.L195L 0.44 TCGA-CV-A6JM-01 19 8319401 8319401 G A CERS4 Silent p.L64L 0.25 TCGA-CV-A6JM-01 19 8808726 8808726 G A ACTL9 Missense_Mutation p.T109M 0.35 tolerated(0.08) benign(0.058) TCGA-CV-A6JM-01 19 9048002 9048002 G A MUC16 Missense_Mutation p.S11210L 0.10 benign(0.402) TCGA-CV-A6JM-01 19 9525388 9525388 G T ZNF266 Missense_Mutation p.S71R 0.43 tolerated(0.23) benign(0.257) TCGA-CV-A6JM-01 19 9921884 9921884 G A FBXL12 Silent p.I223I 0.26 TCGA-CV-A6JM-01 1 1226642 1226642 G A SCNN1D Silent p.Q687Q 0.53 TCGA-CV-A6JM-01 1 149576660 149576660 C A RP11-277L2.3 RNA 0.27 TCGA-CV-A6JM-01 1 152191927 152191927 G A HRNR Silent p.Y726Y 0.07 TCGA-CV-A6JM-01 1 153982496 153982496 G A NUP210L Missense_Mutation p.P1628S 0.44 tolerated(0.24) benign(0.039) TCGA-CV-A6JM-01 1 153982539 153982539 G T NUP210L Silent p.L1613L 0.40 TCGA-CV-A6JM-01 1 154313342 154313342 C T ATP8B2 Silent p.I382I 0.19 TCGA-CV-A6JM-01 1 155764859 155764859 G A GON4L Missense_Mutation p.R577W 0.26 deleterious(0) possibly_damaging(0.835) TCGA-CV-A6JM-01 1 158390379 158390379 G C OR10K2 Missense_Mutation p.S93C 0.57 deleterious(0.01) probably_damaging(0.928) TCGA-CV-A6JM-01 1 158815627 158815627 G A MNDA Missense_Mutation p.C274Y 0.07 tolerated(1) benign(0.047) TCGA-CV-A6JM-01 1 1606915 1606915 C A SLC35E2B Silent p.L191L 0.28 TCGA-CV-A6JM-01 1 161494726 161494727 CC T HSPA6 Frame_Shift_Del p.P93Lfs*5 0.22 TCGA-CV-A6JM-01 1 162731134 162731134 G C DDR2 Missense_Mutation p.S330T 0.19 tolerated(0.22) benign(0.056) TCGA-CV-A6JM-01 1 172520757 172520757 C T SUCO Silent p.F56F 0.32 TCGA-CV-A6JM-01 1 184723709 184723709 C T EDEM3 Silent p.A24A 0.70 TCGA-CV-A6JM-01 1 202710590 202710590 C A KDM5B Silent p.P950P 0.72 TCGA-CV-A6JM-01 1 205039111 205039111 G A CNTN2 Missense_Mutation p.E785K 0.27 deleterious(0.01) benign(0.347) TCGA-CV-A6JM-01 1 206574939 206574939 G T SRGAP2 Nonsense_Mutation p.E245* 0.27 TCGA-CV-A6JM-01 1 21050667 21050667 G A SH2D5 Silent p.R236R 0.33 TCGA-CV-A6JM-01 1 216420042 216420042 C T USH2A Silent p.Q898Q 0.22 TCGA-CV-A6JM-01 1 222805641 222805641 C T MIA3 Missense_Mutation p.P1102S 0.65 tolerated(0.11) possibly_damaging(0.886) TCGA-CV-A6JM-01 1 228565248 228565248 C T OBSCN Nonsense_Mutation p.Q8737* 0.22 TCGA-CV-A6JM-01 1 228612919 228612919 C A HIST3H3 Silent p.V36V 0.22 TCGA-CV-A6JM-01 1 229730338 229730338 C T TAF5L Silent p.L492L 0.26 TCGA-CV-A6JM-01 1 248308924 248308924 G C OR2M5 Missense_Mutation p.D159H 0.21 tolerated(0.69) possibly_damaging(0.776) TCGA-CV-A6JM-01 1 248309207 248309207 G C OR2M5 Missense_Mutation p.G253A 0.23 deleterious(0.02) possibly_damaging(0.818) TCGA-CV-A6JM-01 1 248309242 248309242 G C OR2M5 Missense_Mutation p.D265H 0.22 tolerated(0.22) benign(0.003) TCGA-CV-A6JM-01 1 248309366 248309366 G C OR2M5 Missense_Mutation p.G306A 0.16 tolerated(0.1) benign(0.271) TCGA-CV-A6JM-01 1 26646735 26646735 G A CD52 Missense_Mutation p.G43E 0.11 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-CV-A6JM-01 1 31426564 31426564 G A PUM1 Missense_Mutation p.S863F 0.12 deleterious(0) probably_damaging(1) TCGA-CV-A6JM-01 1 32797098 32797098 G A HDAC1 Missense_Mutation p.E335K 0.37 tolerated(0.05) benign(0.105) TCGA-CV-A6JM-01 1 35370703 35370703 A G DLGAP3 Silent p.P94P 0.36 TCGA-CV-A6JM-01 1 3750506 3750506 C G CEP104 Missense_Mutation p.E527Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-CV-A6JM-01 1 53694620 53694620 C T MAGOH Missense_Mutation p.E89K 0.22 deleterious(0) probably_damaging(0.997) TCGA-CV-A6JM-01 1 5993284 5993284 G A NPHP4 Silent p.L409L 0.33 TCGA-CV-A6JM-01 1 94522172 94522172 C T ABCA4 Silent p.E789E 0.29 TCGA-CV-A6JM-01 20 1146868 1146868 C T PSMF1 3'UTR 0.45 TCGA-CV-A6JM-01 20 14307765 14307765 G A FLRT3 Silent p.L130L 0.31 TCGA-CV-A6JM-01 20 1592121 1592121 G C SIRPB1 Intron 0.55 TCGA-CV-A6JM-01 20 33711712 33711712 C G EDEM2 Missense_Mutation p.E365D 0.20 tolerated(0.21) benign(0.398) TCGA-CV-A6JM-01 20 34144165 34144165 G C ERGIC3 Intron 0.44 TCGA-CV-A6JM-01 20 34144782 34144782 G C ERGIC3 Missense_Mutation p.E311D 0.39 tolerated(0.23) benign(0.358) TCGA-CV-A6JM-01 20 40045370 40045370 G A CHD6 Missense_Mutation p.S2115F 0.33 deleterious(0) possibly_damaging(0.677) TCGA-CV-A6JM-01 20 42208615 42208615 G C SGK2 Missense_Mutation p.E345Q 0.29 deleterious(0.01) possibly_damaging(0.552) TCGA-CV-A6JM-01 20 43355740 43355740 C A WISP2 Missense_Mutation p.S182Y 0.32 tolerated(0.12) benign(0.017) TCGA-CV-A6JM-01 20 44441874 44441874 G A UBE2C Intron 0.44 TCGA-CV-A6JM-01 20 4768915 4768915 C G RASSF2 Splice_Site p.X214_splice 0.19 TCGA-CV-A6JM-01 20 57269534 57269534 C T NPEPL1 Silent p.F131F 0.30 TCGA-CV-A6JM-01 20 58457211 58457211 G A SYCP2 Nonsense_Mutation p.Q847* 0.24 TCGA-CV-A6JM-01 20 60578314 60578314 G A TAF4 Silent p.P796P 0.34 TCGA-CV-A6JM-01 21 37632996 37632996 C T DOPEY2 Missense_Mutation p.P1761S 0.07 tolerated(0.66) possibly_damaging(0.682) TCGA-CV-A6JM-01 22 16256647 16256647 G A POTEH 3'UTR 0.05 TCGA-CV-A6JM-01 22 18016846 18016846 G A CECR2 Missense_Mutation p.G367E 0.29 deleterious(0) probably_damaging(1) TCGA-CV-A6JM-01 22 23437907 23437907 G A GNAZ Missense_Mutation p.E9K 0.32 deleterious(0.05) possibly_damaging(0.874) TCGA-CV-A6JM-01 22 24480736 24480736 G A CABIN1 Missense_Mutation p.E1039K 0.24 tolerated(1) benign(0.145) TCGA-CV-A6JM-01 22 24921817 24921817 G A UPB1 3'UTR 0.21 TCGA-CV-A6JM-01 22 26168328 26168328 G A MYO18B Missense_Mutation p.E574K 0.24 deleterious(0) probably_damaging(0.954) TCGA-CV-A6JM-01 22 26995538 26995538 C T CRYBB1 Silent p.Q225Q 0.19 TCGA-CV-A6JM-01 22 29708410 29708410 C G GAS2L1 3'Flank 0.21 TCGA-CV-A6JM-01 22 30951422 30951422 C A GAL3ST1 Missense_Mutation p.D264Y 0.18 deleterious(0) possibly_damaging(0.886) TCGA-CV-A6JM-01 22 31484061 31484061 C T SMTN Silent p.F54F 0.16 TCGA-CV-A6JM-01 22 38352802 38352802 G A POLR2F Missense_Mutation p.D15N 0.18 tolerated(0.11) unknown(0) TCGA-CV-A6JM-01 22 42392892 42392892 C T SEPT3 Intron 0.18 TCGA-CV-A6JM-01 22 50717426 50717426 G A PLXNB2 Silent p.I1468I 0.35 TCGA-CV-A6JM-01 2 169659175 169659175 G C NOSTRIN Missense_Mutation p.D7H 0.26 tolerated(0.28) benign(0.006) TCGA-CV-A6JM-01 2 172641936 172641936 G A SLC25A12 Missense_Mutation p.P629S 0.23 tolerated(0.16) probably_damaging(1) TCGA-CV-A6JM-01 2 182543167 182543167 C G NEUROD1 Missense_Mutation p.E141Q 0.13 deleterious(0) probably_damaging(1) TCGA-CV-A6JM-01 2 187516767 187516767 C G ITGAV Missense_Mutation p.Q486E 0.21 deleterious(0.05) possibly_damaging(0.469) TCGA-CV-A6JM-01 2 190640248 190640248 T G ORMDL1 Intron 0.14 TCGA-CV-A6JM-01 2 202136242 202136242 C A CASP8 Silent p.V162V 0.46 TCGA-CV-A6JM-01 2 202137501 202137501 T C CASP8 Splice_Site p.X243_splice 0.50 TCGA-CV-A6JM-01 2 202173871 202173871 C T ALS2CR12 Intron 0.13 TCGA-CV-A6JM-01 2 20237149 20237149 G A LAPTM4A Silent p.F120F 0.27 TCGA-CV-A6JM-01 2 204326586 204326586 C T RAPH1 Silent p.E265E 0.05 TCGA-CV-A6JM-01 2 208994241 208994241 C T CRYGC Missense_Mutation p.R59Q 0.27 tolerated(0.07) benign(0.152) TCGA-CV-A6JM-01 2 225379491 225379491 T C CUL3 Splice_Site p.X127_splice 0.30 TCGA-CV-A6JM-01 2 228755971 228755971 G T DAW1 Missense_Mutation p.V87F 0.19 deleterious(0.01) probably_damaging(0.914) TCGA-CV-A6JM-01 2 228881360 228881360 C G SPHKAP Missense_Mutation p.E1404Q 0.20 tolerated(0.11) benign(0.086) TCGA-CV-A6JM-01 2 233344944 233344944 G C ECEL1 Silent p.S749S 0.14 TCGA-CV-A6JM-01 2 239353338 239353338 G A ASB1 Missense_Mutation p.E284K 0.46 tolerated(0.09) benign(0.309) TCGA-CV-A6JM-01 2 25966688 25966688 G C ASXL2 Missense_Mutation p.L840V 0.30 tolerated_low_confidence(0.2) benign(0.012) TCGA-CV-A6JM-01 2 27605047 27605047 G A PPM1G Silent p.I460I 0.26 TCGA-CV-A6JM-01 2 44079860 44079860 C T ABCG8 Missense_Mutation p.R273C 0.18 deleterious(0.01) benign(0.308) TCGA-CV-A6JM-01 2 61009834 61009835 AG - PAPOLG Frame_Shift_Del p.D348* 0.18 TCGA-CV-A6JM-01 2 61720111 61720111 C T XPO1 Silent p.V441V 0.53 TCGA-CV-A6JM-01 2 64174526 64174526 G A VPS54 Silent p.I412I 0.30 TCGA-CV-A6JM-01 2 72374783 72374783 C T CYP26B1 Missense_Mutation p.E61K 0.18 deleterious(0) probably_damaging(0.96) TCGA-CV-A6JM-01 2 74867368 74867368 G A M1AP Missense_Mutation p.S12F 0.27 tolerated(0.05) possibly_damaging(0.6) TCGA-CV-A6JM-01 2 74881556 74881556 C T SEMA4F Missense_Mutation p.S18L 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.885) TCGA-CV-A6JM-01 3 10089666 10089666 G A FANCD2 Silent p.Q448Q 0.10 TCGA-CV-A6JM-01 3 113300226 113300226 G A SIDT1 Missense_Mutation p.D228N 0.28 tolerated(0.13) possibly_damaging(0.826) TCGA-CV-A6JM-01 3 148596283 148596283 G A CPA3 Missense_Mutation p.D109N 0.20 tolerated(0.45) benign(0.002) TCGA-CV-A6JM-01 3 151176498 151176498 C T IGSF10 5'Flank 0.11 TCGA-CV-A6JM-01 3 173997435 173997435 A C NLGN1 Missense_Mutation p.K548N 0.11 deleterious(0) probably_damaging(0.996) TCGA-CV-A6JM-01 3 174951857 174951857 C T NAALADL2 Missense_Mutation p.P228S 0.10 tolerated(0.33) benign(0.009) TCGA-CV-A6JM-01 3 178936013 178936013 A G PIK3CA Missense_Mutation p.R519G 0.32 tolerated(0.4) benign(0.005) TCGA-CV-A6JM-01 3 180397109 180397109 C G CCDC39 Silent p.A20A 0.13 TCGA-CV-A6JM-01 3 180397135 180397135 C T CCDC39 Missense_Mutation p.E12K 0.35 deleterious(0.01) benign(0.287) TCGA-CV-A6JM-01 3 186507997 186507997 G C RFC4 Silent p.L310L 0.36 TCGA-CV-A6JM-01 3 40293461 40293461 G T MYRIP Nonsense_Mutation p.E840* 0.19 TCGA-CV-A6JM-01 3 42679134 42679134 C T NKTR Silent p.I646I 0.27 TCGA-CV-A6JM-01 3 73016736 73016736 C T GXYLT2 Missense_Mutation p.P339S 0.16 deleterious(0.04) probably_damaging(1) TCGA-CV-A6JM-01 4 144359510 144359510 C G GAB1 Missense_Mutation p.Q318E 0.26 deleterious(0.03) possibly_damaging(0.907) TCGA-CV-A6JM-01 4 144359528 144359528 C G GAB1 Missense_Mutation p.P324A 0.28 tolerated(0.1) benign(0.02) TCGA-CV-A6JM-01 4 152593947 152593947 G A PET112 Silent p.L504L 0.21 TCGA-CV-A6JM-01 4 152629137 152629137 C T PET112 Intron 0.33 TCGA-CV-A6JM-01 4 170428925 170428925 C T NEK1 Missense_Mutation p.E618K 0.38 tolerated(0.14) benign(0.003) TCGA-CV-A6JM-01 4 52961136 52961136 C T SPATA18 3'UTR 0.38 TCGA-CV-A6JM-01 4 72205057 72205057 T A SLC4A4 Intron 0.27 TCGA-CV-A6JM-01 4 7668891 7668891 G A SORCS2 Missense_Mutation p.R371H 0.24 deleterious(0) probably_damaging(0.931) TCGA-CV-A6JM-01 4 76797791 76797791 C T PPEF2 Silent p.K323K 0.08 TCGA-CV-A6JM-01 4 79359850 79359850 G T FRAS1 Missense_Mutation p.D1782Y 0.39 probably_damaging(0.992) TCGA-CV-A6JM-01 4 88767090 88767090 G A MEPE Missense_Mutation p.R357K 0.13 deleterious(0.01) possibly_damaging(0.757) TCGA-CV-A6JM-01 5 101834592 101834592 C G SLCO6A1 5'UTR 0.31 TCGA-CV-A6JM-01 5 136324223 136324223 G A SPOCK1 Silent p.I272I 0.26 TCGA-CV-A6JM-01 5 140222595 140222595 G A PCDHA8 Silent p.P563P 0.07 TCGA-CV-A6JM-01 5 140306685 140306685 C G PCDHAC1 Missense_Mutation p.L70V 0.25 tolerated(0.07) benign(0.18) TCGA-CV-A6JM-01 5 140616093 140616093 C A PCDHB18 RNA 0.65 TCGA-CV-A6JM-01 5 140745446 140745446 C T PCDHGA5 Silent p.L517L 0.28 TCGA-CV-A6JM-01 5 14368980 14368980 C T TRIO Missense_Mutation p.S1013F 0.36 probably_damaging(0.982) TCGA-CV-A6JM-01 5 154396309 154396309 C A KIF4B Missense_Mutation p.Q964K 0.08 tolerated(1) benign(0) TCGA-CV-A6JM-01 5 154396373 154396373 A G KIF4B Missense_Mutation p.Q985R 0.17 tolerated(0.43) benign(0.002) TCGA-CV-A6JM-01 5 154396403 154396403 T C KIF4B Missense_Mutation p.I995T 0.19 tolerated(1) benign(0) TCGA-CV-A6JM-01 5 154396443 154396443 T G KIF4B Missense_Mutation p.N1008K 0.17 tolerated(1) benign(0) TCGA-CV-A6JM-01 5 154396480 154396480 A G KIF4B Missense_Mutation p.I1021V 0.21 tolerated(0.48) benign(0.007) TCGA-CV-A6JM-01 5 154396521 154396521 T C KIF4B Silent p.F1034F 0.25 TCGA-CV-A6JM-01 5 154396626 154396626 T C KIF4B Silent p.D1069D 0.16 TCGA-CV-A6JM-01 5 154396653 154396653 C T KIF4B Silent p.V1078V 0.22 TCGA-CV-A6JM-01 5 154396704 154396704 G A KIF4B Silent p.G1095G 0.19 TCGA-CV-A6JM-01 5 154396756 154396756 A T KIF4B Missense_Mutation p.S1113C 0.18 tolerated(0.1) benign(0.001) TCGA-CV-A6JM-01 5 154396820 154396820 A G KIF4B Missense_Mutation p.Q1134R 0.26 tolerated_low_confidence(0.63) benign(0) TCGA-CV-A6JM-01 5 154396893 154396893 C T KIF4B Silent p.N1158N 0.08 TCGA-CV-A6JM-01 5 154396896 154396896 T C KIF4B Silent p.P1159P 0.08 TCGA-CV-A6JM-01 5 171220 171220 C G PLEKHG4B Silent p.L908L 0.46 TCGA-CV-A6JM-01 5 177420034 177420034 G A PROP1 Silent p.N119N 0.38 TCGA-CV-A6JM-01 5 179226298 179226298 G A MGAT4B Missense_Mutation p.R367W 0.21 deleterious(0) probably_damaging(0.993) TCGA-CV-A6JM-01 5 37049397 37049397 A G NIPBL Silent p.P2316P 0.05 TCGA-CV-A6JM-01 5 54960600 54960600 C G SLC38A9 Missense_Mutation p.L206F 0.11 deleterious(0.05) possibly_damaging(0.483) TCGA-CV-A6JM-01 6 110112691 110112691 G C FIG4 Missense_Mutation p.D765H 0.43 deleterious(0.01) possibly_damaging(0.873) TCGA-CV-A6JM-01 6 111210139 111210139 C A AMD1 Missense_Mutation p.P93T 0.47 tolerated(0.1) possibly_damaging(0.828) TCGA-CV-A6JM-01 6 111210179 111210179 C G AMD1 Nonsense_Mutation p.S106* 0.44 TCGA-CV-A6JM-01 6 11201194 11201194 G A NEDD9 Intron 0.41 TCGA-CV-A6JM-01 6 146351107 146351107 A G GRM1 Missense_Mutation p.T152A 0.70 tolerated(0.85) benign(0.004) TCGA-CV-A6JM-01 6 167344565 167344565 C A RNASET2 Silent p.V178V 0.25 TCGA-CV-A6JM-01 6 170162599 170162599 G A ERMARD Missense_Mutation p.R311K 0.56 tolerated(1) benign(0.001) TCGA-CV-A6JM-01 6 28543539 28543539 G A SCAND3 Missense_Mutation p.H315Y 0.65 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-CV-A6JM-01 6 31931238 31931238 C T SKIV2L Silent p.P484P 0.47 TCGA-CV-A6JM-01 6 33659398 33659398 C A ITPR3 Missense_Mutation p.P2411H 0.59 deleterious(0.03) possibly_damaging(0.82) TCGA-CV-A6JM-01 6 41704503 41704503 G A PGC 3'UTR 0.60 TCGA-CV-A6JM-01 6 43604139 43604139 C T MAD2L1BP Missense_Mutation p.S55F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-CV-A6JM-01 6 71571502 71571502 C G SMAP1 3'UTR 0.35 TCGA-CV-A6JM-01 6 80223093 80223093 C T LCA5 Missense_Mutation p.E186K 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-CV-A6JM-01 6 87970506 87970506 C G ZNF292 Missense_Mutation p.P2387A 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-CV-A6JM-01 6 99817632 99817632 C T COQ3 Nonsense_Mutation p.W318* 0.47 TCGA-CV-A6JM-01 7 117176710 117176710 G A CFTR Missense_Mutation p.M284I 0.57 tolerated(0.72) benign(0.035) TCGA-CV-A6JM-01 7 12662468 12662468 G A SCIN Missense_Mutation p.D237N 0.23 deleterious(0.05) benign(0.042) TCGA-CV-A6JM-01 7 142638423 142638423 G A KEL Silent p.L705L 0.51 TCGA-CV-A6JM-01 7 142989429 142989429 C T CASP2 Missense_Mutation p.L88F 0.51 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JM-01 7 40498797 40498797 G T SUGCT Missense_Mutation p.R336L 0.16 tolerated(0.75) benign(0.322) TCGA-CV-A6JM-01 7 5644943 5644943 G A FSCN1 Silent p.A440A 0.22 TCGA-CV-A6JM-01 7 73119427 73119427 G A STX1A Intron 0.38 TCGA-CV-A6JM-01 7 75894108 75894119 AAAGAGAAGAAC - SRRM3 In_Frame_Del p.N237_K240del 0.09 TCGA-CV-A6JM-01 7 98633051 98633051 G A SMURF1 Intron 0.60 TCGA-CV-A6JM-01 8 105001624 105001624 G C RIMS2 Missense_Mutation p.D1007H 0.25 tolerated_low_confidence(0.18) possibly_damaging(0.521) TCGA-CV-A6JM-01 8 110980398 110980398 C A KCNV1 Silent p.R474R 0.60 TCGA-CV-A6JM-01 8 113349834 113349834 G A CSMD3 Missense_Mutation p.S2260L 0.30 deleterious(0) possibly_damaging(0.542) TCGA-CV-A6JM-01 8 119123066 119123066 C G EXT1 Missense_Mutation p.E74Q 0.22 tolerated(0.31) benign(0.058) TCGA-CV-A6JM-01 8 124664957 124664957 C T KLHL38 Silent p.K70K 0.32 TCGA-CV-A6JM-01 8 131792943 131792943 C G ADCY8 Missense_Mutation p.R1150P 0.30 deleterious(0) benign(0.004) TCGA-CV-A6JM-01 8 144358465 144358465 G A GLI4 Missense_Mutation p.E208K 0.16 deleterious(0) probably_damaging(0.996) TCGA-CV-A6JM-01 8 144645115 144645115 G A GSDMD 3'UTR 0.27 TCGA-CV-A6JM-01 8 145001638 145001638 C G PLEC Missense_Mutation p.Q1369H 0.16 unknown(0) TCGA-CV-A6JM-01 8 17088201 17088201 G T CNOT7 3'UTR 0.26 TCGA-CV-A6JM-01 8 25303757 25303757 C A KCTD9 Missense_Mutation p.V20L 0.13 tolerated(0.45) benign(0.023) TCGA-CV-A6JM-01 8 25360886 25360886 C T CDCA2 Intron 0.67 TCGA-CV-A6JM-01 8 40554786 40554786 C T ZMAT4 Silent p.E109E 0.08 TCGA-CV-A6JM-01 8 41394782 41394782 C A GINS4 Silent p.L89L 0.62 TCGA-CV-A6JM-01 8 62289261 62289261 G A CLVS1 Missense_Mutation p.D185N 0.24 tolerated(0.37) probably_damaging(0.999) TCGA-CV-A6JM-01 8 82392784 82392784 C T FABP4 Missense_Mutation p.M41I 0.29 tolerated(0.16) benign(0.002) TCGA-CV-A6JM-01 9 103279035 103279035 A C TMEFF1 Missense_Mutation p.E181A 0.30 deleterious(0.03) probably_damaging(0.98) TCGA-CV-A6JM-01 9 125487200 125487200 C G OR1L4 Nonsense_Mutation p.S311* 0.56 TCGA-CV-A6JM-01 9 139412282 139412282 C T NOTCH1 Missense_Mutation p.E455K 0.56 deleterious(0) probably_damaging(1) TCGA-CV-A6JM-01 9 16552615 16552615 G A BNC2 Silent p.F194F 0.43 TCGA-CV-A6JM-01 9 21971107 21971107 T C CDKN2A Missense_Mutation p.D84G 0.29 deleterious(0) probably_damaging(1) TCGA-CV-A6JM-01 9 33038869 33038869 C T DNAJA1 Missense_Mutation p.P388S 0.10 tolerated(0.14) benign(0.014) TCGA-CV-A6JM-01 9 35736716 35736716 C G CREB3 Nonsense_Mutation p.S370* 0.33 TCGA-CV-A6JM-01 9 36162544 36162544 G A GLIPR2 3'UTR 0.12 TCGA-CV-A6JM-01 9 77567328 77567328 G C C9orf40 Missense_Mutation p.S67W 0.55 deleterious(0.04) probably_damaging(0.966) TCGA-CV-A6JM-01 9 77755829 77755829 G A OSTF1 Silent p.L189L 0.61 TCGA-CV-A6JM-01 X 129045063 129045063 A G UTP14A Silent p.Q106Q 0.60 TCGA-CV-A6JM-01 X 71521739 71521739 G T CITED1 Missense_Mutation p.S165Y 0.52 deleterious(0.01) possibly_damaging(0.543) TCGA-CV-A6JN-01 11 126073163 126073163 C T RPUSD4 3'UTR 0.60 TCGA-CV-A6JN-01 11 55406592 55406592 G T OR4P4 Missense_Mutation p.L253F 0.36 tolerated(0.09) benign(0.182) TCGA-CV-A6JN-01 11 6478168 6478168 G T TRIM3 Nonsense_Mutation p.S263* 0.29 TCGA-CV-A6JN-01 12 117583968 117583968 T C FBXO21 Missense_Mutation p.Y604C 0.21 deleterious(0) probably_damaging(0.996) TCGA-CV-A6JN-01 12 40041631 40041631 A G C12orf40 Missense_Mutation p.Q141R 0.23 tolerated(0.15) benign(0.44) TCGA-CV-A6JN-01 12 422318 422318 T A KDM5A Missense_Mutation p.E980D 0.31 tolerated(0.05) probably_damaging(0.948) TCGA-CV-A6JN-01 12 46245858 46245858 C T ARID2 Nonsense_Mutation p.Q1318* 0.29 TCGA-CV-A6JN-01 12 6687075 6687075 T C CHD4 Missense_Mutation p.Y1746C 0.21 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JN-01 12 82147831 82147831 G A PPFIA2 Missense_Mutation p.S57L 0.21 deleterious(0.04) benign(0.003) TCGA-CV-A6JN-01 12 98995265 98995265 A T SLC25A3 Missense_Mutation p.M350L 0.22 deleterious(0.03) possibly_damaging(0.722) TCGA-CV-A6JN-01 13 23929166 23929166 C T SACS Missense_Mutation p.D529N 0.34 benign(0.046) TCGA-CV-A6JN-01 13 38211127 38211127 A T TRPC4 Missense_Mutation p.H954Q 0.27 tolerated_low_confidence(0.42) benign(0.001) TCGA-CV-A6JN-01 13 77847776 77847776 A G MYCBP2 Missense_Mutation p.I221T 0.26 benign(0) TCGA-CV-A6JN-01 14 45639847 45639847 A G FANCM Silent p.K686K 0.17 TCGA-CV-A6JN-01 14 53539369 53539369 C A DDHD1 Silent p.L483L 0.17 TCGA-CV-A6JN-01 14 94750313 94750313 T C SERPINA10 Missense_Mutation p.T442A 0.17 deleterious(0.04) benign(0.065) TCGA-CV-A6JN-01 15 22999449 22999449 C G CYFIP1 Silent p.P1107P 0.22 TCGA-CV-A6JN-01 15 59500990 59500990 C T MYO1E Missense_Mutation p.G474S 0.27 tolerated(0.68) probably_damaging(1) TCGA-CV-A6JN-01 15 59910754 59910754 T C GCNT3 Missense_Mutation p.L106P 0.34 deleterious(0) possibly_damaging(0.498) TCGA-CV-A6JN-01 15 62253878 62253878 T C VPS13C Missense_Mutation p.N1273S 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-CV-A6JN-01 15 75702549 75702549 C T SIN3A Missense_Mutation p.A363T 0.06 deleterious(0) probably_damaging(0.981) TCGA-CV-A6JN-01 15 92647732 92647732 G T SLCO3A1 Silent p.L323L 0.31 TCGA-CV-A6JN-01 16 2259554 2259554 C A BRICD5 Missense_Mutation p.G198W 0.20 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JN-01 16 27455956 27455956 C T IL21R Missense_Mutation p.R201W 0.29 deleterious(0) probably_damaging(1) TCGA-CV-A6JN-01 16 50258846 50258846 A G PAPD5 Missense_Mutation p.Y503C 0.25 deleterious(0.01) probably_damaging(0.926) TCGA-CV-A6JN-01 17 18208525 18208525 C G TOP3A Missense_Mutation p.E134Q 0.65 tolerated(0.1) benign(0.261) TCGA-CV-A6JN-01 17 43906597 43906597 A C CRHR1 Missense_Mutation p.H115P 0.19 deleterious(0.02) benign(0.046) TCGA-CV-A6JN-01 17 45009511 45009511 G C GOSR2 Missense_Mutation p.R94S 0.18 deleterious(0) possibly_damaging(0.71) TCGA-CV-A6JN-01 17 47579544 47579544 C A NGFR Silent p.T62T 0.27 TCGA-CV-A6JN-01 17 4936394 4936394 C T SLC52A1 Missense_Mutation p.G402D 0.56 tolerated(1) benign(0.097) TCGA-CV-A6JN-01 17 7578519 7578522 CAGT - TP53 Frame_Shift_Del p.L137Pfs*32 0.55 TCGA-CV-A6JN-01 18 28914135 28914135 A G DSG1 Silent p.R325R 0.44 TCGA-CV-A6JN-01 19 33878160 33878160 T C PEPD 3'UTR 0.27 TCGA-CV-A6JN-01 19 39691350 39691350 G A NCCRP1 Missense_Mutation p.R261Q 0.17 tolerated(0.22) possibly_damaging(0.688) TCGA-CV-A6JN-01 19 50060443 50060443 G A NOSIP Nonsense_Mutation p.Q108* 0.45 TCGA-CV-A6JN-01 19 53454620 53454620 A T ZNF816 Silent p.T136T 0.27 TCGA-CV-A6JN-01 1 145533500 145533500 C T ITGA10 Silent p.I461I 0.36 TCGA-CV-A6JN-01 1 161017688 161017688 G A ARHGAP30 Silent p.A1041A 0.20 TCGA-CV-A6JN-01 1 21943975 21943975 G A RAP1GAP Nonsense_Mutation p.R103* 0.37 TCGA-CV-A6JN-01 1 25729191 25729191 C A RHCE Missense_Mutation p.G128C 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-CV-A6JN-01 1 46976214 46976214 C T DMBX1 Missense_Mutation p.T74M 0.17 deleterious(0) probably_damaging(0.987) TCGA-CV-A6JN-01 20 50701067 50701067 C A ZFP64 3'UTR 0.18 TCGA-CV-A6JN-01 21 46086818 46086818 G A KRTAP12-2 5'UTR 0.12 TCGA-CV-A6JN-01 22 23596158 23596158 C T BCR Silent p.S484S 0.16 TCGA-CV-A6JN-01 22 25016930 25016930 C A GGT1 Missense_Mutation p.T209N 0.32 tolerated(0.06) possibly_damaging(0.673) TCGA-CV-A6JN-01 22 37892523 37892523 G A CARD10 Silent p.A664A 0.28 TCGA-CV-A6JN-01 22 42422962 42422962 T C WBP2NL Missense_Mutation p.L236P 0.07 tolerated(0.34) probably_damaging(0.928) TCGA-CV-A6JN-01 22 42422963 42422963 A T WBP2NL Silent p.L236L 0.15 TCGA-CV-A6JN-01 2 105858933 105858933 G A GPR45 Silent p.A206A 0.34 TCGA-CV-A6JN-01 2 18113195 18113195 C T KCNS3 Missense_Mutation p.S307L 0.24 deleterious(0) probably_damaging(0.943) TCGA-CV-A6JN-01 2 204000972 204000972 A G NBEAL1 Silent p.Q1433Q 0.16 TCGA-CV-A6JN-01 2 216177193 216177193 T G ATIC Intron 0.22 TCGA-CV-A6JN-01 2 231042314 231042314 G A SP110 Silent p.N510N 0.23 TCGA-CV-A6JN-01 2 232458648 232458648 G A C2orf57 Missense_Mutation p.R329H 0.18 tolerated(0.21) benign(0.001) TCGA-CV-A6JN-01 2 233839353 233839353 C T NGEF Missense_Mutation p.R83Q 0.27 tolerated_low_confidence(0.63) benign(0) TCGA-CV-A6JN-01 2 241835040 241835040 G A C2orf54 Silent p.T125T 0.19 TCGA-CV-A6JN-01 2 33586550 33586550 C T LTBP1 Missense_Mutation p.S1413L 0.08 tolerated(0.18) benign(0.009) TCGA-CV-A6JN-01 2 38218436 38218436 A G RMDN2 Missense_Mutation p.Y492C 0.31 deleterious(0) probably_damaging(1) TCGA-CV-A6JN-01 2 46587863 46587863 C T EPAS1 Missense_Mutation p.R181C 0.38 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JN-01 2 88890056 88890056 T C EIF2AK3 Missense_Mutation p.D357G 0.15 tolerated(0.14) benign(0.213) TCGA-CV-A6JN-01 3 114069466 114069466 G C ZBTB20 Missense_Mutation p.L487V 0.25 deleterious(0.01) possibly_damaging(0.899) TCGA-CV-A6JN-01 3 123383035 123383035 C T MYLK Missense_Mutation p.R1301H 0.29 deleterious(0.03) possibly_damaging(0.619) TCGA-CV-A6JN-01 3 128706656 128706656 T C KIAA1257 Missense_Mutation p.H157R 0.35 tolerated(0.35) benign(0.005) TCGA-CV-A6JN-01 3 129034308 129034308 C G H1FX Missense_Mutation p.K146N 0.38 deleterious(0) benign(0.245) TCGA-CV-A6JN-01 3 184039336 184039336 G A EIF4G1 Missense_Mutation p.E329K 0.36 tolerated(0.42) probably_damaging(0.967) TCGA-CV-A6JN-01 3 192517140 192517140 T C MB21D2 Missense_Mutation p.I171V 0.30 tolerated(1) benign(0.001) TCGA-CV-A6JN-01 3 49138814 49138814 T C QARS Missense_Mutation p.I284V 0.33 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JN-01 3 49736208 49736208 C T RNF123 Silent p.I197I 0.34 TCGA-CV-A6JN-01 4 113524756 113524756 T C C4orf21 Missense_Mutation p.D967G 0.28 tolerated(0.23) benign(0.006) TCGA-CV-A6JN-01 4 175158487 175158487 T C FBXO8 3'UTR 0.27 TCGA-CV-A6JN-01 4 39878721 39878721 G T PDS5A Missense_Mutation p.S682Y 0.17 tolerated(0.4) benign(0.316) TCGA-CV-A6JN-01 4 56820470 56820470 G T CEP135 Missense_Mutation p.L131F 0.07 deleterious(0) possibly_damaging(0.718) TCGA-CV-A6JN-01 4 77662469 77662469 G A SHROOM3 Missense_Mutation p.R1048H 0.15 tolerated(0.96) benign(0.013) TCGA-CV-A6JN-01 4 84362496 84362496 C T HELQ Missense_Mutation p.E542K 0.14 deleterious(0.01) benign(0.15) TCGA-CV-A6JN-01 4 8607830 8607830 G A CPZ Missense_Mutation p.R275H 0.16 deleterious(0) probably_damaging(0.989) TCGA-CV-A6JN-01 5 137271550 137271550 T A PKD2L2 Missense_Mutation p.M579K 0.14 tolerated(0.55) benign(0.002) TCGA-CV-A6JN-01 5 159776736 159776736 G A C1QTNF2 Silent p.A144A 0.24 TCGA-CV-A6JN-01 5 170725847 170725847 C T RANBP17 Silent p.L1084L 0.35 TCGA-CV-A6JN-01 6 111214770 111214770 A G AMD1 Missense_Mutation p.N319S 0.24 tolerated(0.12) benign(0.244) TCGA-CV-A6JN-01 6 127767859 127767859 A G KIAA0408 Silent p.N535N 0.50 TCGA-CV-A6JN-01 6 160200044 160200044 T C TCP1 3'UTR 0.32 TCGA-CV-A6JN-01 6 30457340 30457340 C T HLA-E Missense_Mutation p.S11L 0.52 tolerated_low_confidence(0.06) benign(0.32) TCGA-CV-A6JN-01 6 30622519 30622519 G A DHX16 Silent p.H987H 0.42 TCGA-CV-A6JN-01 6 33272960 33272960 T C TAPBP Missense_Mutation p.N225S 0.24 tolerated(0.89) benign(0) TCGA-CV-A6JN-01 7 105195584 105195584 G C RINT1 Missense_Mutation p.E527D 0.23 tolerated(0.12) benign(0.38) TCGA-CV-A6JN-01 7 111927000 111927000 C G ZNF277 Missense_Mutation p.S55C 0.25 deleterious(0.02) benign(0.005) TCGA-CV-A6JN-01 7 11630167 11630167 C T THSD7A Missense_Mutation p.G458D 0.28 deleterious(0) probably_damaging(1) TCGA-CV-A6JN-01 7 75517488 75517488 G T RHBDD2 Missense_Mutation p.V306L 0.23 tolerated(0.07) benign(0.377) TCGA-CV-A6JN-01 7 94915636 94915636 A G PPP1R9A Missense_Mutation p.E1243G 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JN-01 7 99016911 99016911 A G PTCD1 3'Flank 0.26 TCGA-CV-A6JN-01 7 99117515 99117515 C T ZKSCAN5 Missense_Mutation p.L207F 0.18 tolerated(0.13) possibly_damaging(0.58) TCGA-CV-A6JN-01 7 99869612 99869612 G A GATS 5'UTR 0.24 TCGA-CV-A6JN-01 9 131600355 131600355 C T CCBL1 Missense_Mutation p.R138H 0.24 tolerated(0.62) benign(0.001) TCGA-CV-A6JN-01 9 133540115 133540115 C T PRDM12 Silent p.A25A 0.20 TCGA-CV-A6JN-01 9 34372233 34372233 T C KIAA1161 Missense_Mutation p.I203V 0.19 tolerated(0.47) probably_damaging(0.99) TCGA-CV-A6JN-01 9 35704667 35704667 T A TLN1 Missense_Mutation p.K1960M 0.22 deleterious(0) probably_damaging(0.964) TCGA-CV-A6JN-01 9 37842132 37842132 A G DCAF10 Missense_Mutation p.I234V 0.17 tolerated(0.98) benign(0.079) TCGA-CV-A6JN-01 9 79852968 79852968 C A VPS13A Nonsense_Mutation p.S549* 0.16 TCGA-CV-A6JN-01 9 84532324 84532324 A C SPATA31D5P RNA 0.27 TCGA-CV-A6JN-01 X 106066678 106066678 C T TBC1D8B Missense_Mutation p.P270L 0.50 deleterious(0.02) possibly_damaging(0.885) TCGA-CV-A6JN-01 X 63548721 63548721 C A MTMR8 Missense_Mutation p.R471M 0.58 tolerated(0.25) benign(0.019) TCGA-CV-A6JO-01 10 124001517 124001517 G A TACC2 Splice_Site p.X2798_splice 0.09 TCGA-CV-A6JO-01 10 38344196 38344196 G T ZNF33A Nonsense_Mutation p.E382* 0.17 TCGA-CV-A6JO-01 10 62648704 62648704 G A RHOBTB1 Missense_Mutation p.P241L 0.13 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JO-01 10 64966991 64966992 - A JMJD1C Frame_Shift_Ins p.I1480Yfs*16 0.13 TCGA-CV-A6JO-01 10 81316921 81316921 G T SFTPA2 3'UTR 0.13 TCGA-CV-A6JO-01 11 118371736 118371736 C T KMT2A Missense_Mutation p.R2065C 0.14 probably_damaging(0.999) TCGA-CV-A6JO-01 11 534289 534289 C T HRAS Missense_Mutation p.G12S 0.29 deleterious(0.02) possibly_damaging(0.525) TCGA-CV-A6JO-01 11 59807830 59807830 C T OOSP2 5'UTR 0.10 TCGA-CV-A6JO-01 11 64521397 64521397 G T PYGM Missense_Mutation p.P398Q 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A6JO-01 11 68181289 68181289 G A LRP5 Missense_Mutation p.R879H 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-CV-A6JO-01 11 77916981 77916981 C T USP35 Missense_Mutation p.R431W 0.09 deleterious(0) unknown(0) TCGA-CV-A6JO-01 12 78362441 78362441 G A NAV3 Silent p.S210S 0.10 TCGA-CV-A6JO-01 13 111299479 111299479 C T CARS2 Missense_Mutation p.G388S 0.30 tolerated(0.2) benign(0.016) TCGA-CV-A6JO-01 13 19752452 19752452 G A TUBA3C Silent p.Y103Y 0.11 TCGA-CV-A6JO-01 14 70991263 70991263 C A ADAM20 Missense_Mutation p.R121I 0.17 deleterious(0.02) benign(0.288) TCGA-CV-A6JO-01 15 22383025 22383025 A G OR4N4 Missense_Mutation p.I185V 0.11 tolerated(0.17) benign(0.075) TCGA-CV-A6JO-01 15 41059435 41059435 A C GCHFR Missense_Mutation p.Y48S 0.11 tolerated(0.35) benign(0.337) TCGA-CV-A6JO-01 15 42114547 42114547 C A MAPKBP1 Silent p.G1058G 0.10 TCGA-CV-A6JO-01 15 43350570 43350570 T C UBR1 Missense_Mutation p.Y384C 0.14 tolerated(0.14) benign(0.081) TCGA-CV-A6JO-01 15 58837961 58837961 T A LIPC Missense_Mutation p.L199M 0.08 tolerated(0.23) possibly_damaging(0.491) TCGA-CV-A6JO-01 15 91304134 91304134 C A BLM Missense_Mutation p.L511I 0.11 tolerated(0.82) benign(0.002) TCGA-CV-A6JO-01 16 11363090 11363090 G - TNP2 Frame_Shift_Del p.T11Pfs*76 0.08 TCGA-CV-A6JO-01 16 31202080 31202080 A G FUS Missense_Mutation p.N437S 0.14 deleterious(0) possibly_damaging(0.874) TCGA-CV-A6JO-01 17 16185386 16185386 C T PIGL Intron 0.15 TCGA-CV-A6JO-01 17 38189381 38189381 G A MED24 Silent p.L250L 0.12 TCGA-CV-A6JO-01 17 56581672 56581672 C T MTMR4 Missense_Mutation p.A493T 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-CV-A6JO-01 17 58292126 58292126 G T USP32 Missense_Mutation p.P626H 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-CV-A6JO-01 17 77705020 77705020 G A ENPP7 Missense_Mutation p.G40D 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A6JO-01 18 31537316 31537316 G A NOL4 Missense_Mutation p.R468W 0.08 deleterious(0) possibly_damaging(0.721) TCGA-CV-A6JO-01 18 34081902 34081902 A G FHOD3 Silent p.L115L 0.09 TCGA-CV-A6JO-01 18 77246756 77246756 G A NFATC1 Silent p.A854A 0.12 TCGA-CV-A6JO-01 19 10663588 10663588 C T ATG4D Missense_Mutation p.R424W 0.13 deleterious(0) probably_damaging(0.937) TCGA-CV-A6JO-01 19 11687262 11687262 G A ACP5 Silent p.D177D 0.17 TCGA-CV-A6JO-01 19 23928041 23928041 C A ZNF681 Missense_Mutation p.G104V 0.14 tolerated(0.2) probably_damaging(0.972) TCGA-CV-A6JO-01 19 45867490 45867490 C T ERCC2 Intron 0.14 TCGA-CV-A6JO-01 1 152278802 152278802 A C FLG Missense_Mutation p.S2854A 0.05 benign(0.141) TCGA-CV-A6JO-01 1 153610803 153610803 C T CHTOP Missense_Mutation p.T33M 0.04 tolerated(0.38) benign(0) TCGA-CV-A6JO-01 1 154031152 154031152 A T NUP210L Silent p.P956P 0.19 TCGA-CV-A6JO-01 1 156108383 156108383 C T LMNA Silent p.S601S 0.16 TCGA-CV-A6JO-01 1 156713619 156713619 C - HDGF Frame_Shift_Del p.E197Rfs*? 0.12 TCGA-CV-A6JO-01 1 235993708 235993708 C T LYST Missense_Mutation p.D4N 0.20 tolerated_low_confidence(0.45) benign(0.002) TCGA-CV-A6JO-01 1 246704302 246704302 A C TFB2M 3'UTR 0.29 TCGA-CV-A6JO-01 1 6190292 6190292 G A CHD5 Missense_Mutation p.S1120L 0.17 deleterious(0) probably_damaging(0.969) TCGA-CV-A6JO-01 1 6635003 6635003 G A TAS1R1 Missense_Mutation p.V271M 0.22 deleterious(0.01) probably_damaging(0.954) TCGA-CV-A6JO-01 1 67423735 67423744 TATTTAGGAA - MIER1 Splice_Site p.X114_splice 0.09 TCGA-CV-A6JO-01 1 85624650 85624650 C A SYDE2 Missense_Mutation p.G1123V 0.09 deleterious(0.03) benign(0.04) TCGA-CV-A6JO-01 1 86146538 86146538 C A ZNHIT6 Missense_Mutation p.A357S 0.08 tolerated(0.06) benign(0.403) TCGA-CV-A6JO-01 20 33033102 33033103 - G ITCH Frame_Shift_Ins p.V368Gfs*2 0.11 TCGA-CV-A6JO-01 20 42788430 42788430 C T JPH2 Missense_Mutation p.D333N 0.24 deleterious(0.02) probably_damaging(0.967) TCGA-CV-A6JO-01 20 49626747 49626747 C T KCNG1 Silent p.A43A 0.16 TCGA-CV-A6JO-01 21 31691743 31691743 C T KRTAP26-1 Missense_Mutation p.R204H 0.08 tolerated(0.44) benign(0.049) TCGA-CV-A6JO-01 21 41457657 41457657 C T DSCAM Missense_Mutation p.R1335Q 0.12 tolerated(0.09) benign(0.094) TCGA-CV-A6JO-01 22 42477982 42477982 C T SMDT1 Silent p.V80V 0.11 TCGA-CV-A6JO-01 22 43010948 43010948 C T POLDIP3 5'UTR 0.17 TCGA-CV-A6JO-01 2 136669047 136669047 T C DARS Missense_Mutation p.Y416C 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A6JO-01 2 202131273 202131273 C T CASP8 Missense_Mutation p.L81F 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A6JO-01 2 230705568 230705568 T C TRIP12 Missense_Mutation p.Q326R 0.12 tolerated(0.22) benign(0.045) TCGA-CV-A6JO-01 3 126291181 126291181 A T TXNRD3NB Missense_Mutation p.L69Q 0.07 possibly_damaging(0.883) TCGA-CV-A6JO-01 3 138739005 138739005 G A PRR23B Missense_Mutation p.R167W 0.10 tolerated(1) benign(0.003) TCGA-CV-A6JO-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.19 deleterious(0.01) probably_damaging(1) TCGA-CV-A6JO-01 3 184297479 184297479 A C EPHB3 Missense_Mutation p.E643D 0.09 deleterious(0.03) benign(0.145) TCGA-CV-A6JO-01 3 195015477 195015477 G A ACAP2 Missense_Mutation p.T579M 0.22 tolerated(0.23) benign(0.011) TCGA-CV-A6JO-01 3 52780141 52780141 T G NEK4 Missense_Mutation p.N588T 0.14 tolerated(0.26) benign(0.016) TCGA-CV-A6JO-01 3 98530369 98530369 G T DCBLD2 Missense_Mutation p.P465T 0.13 tolerated(0.2) benign(0.003) TCGA-CV-A6JO-01 4 145636573 145636573 G C HHIP Missense_Mutation p.D557H 0.14 deleterious(0) probably_damaging(0.973) TCGA-CV-A6JO-01 4 153881733 153881733 C T FHDC1 Missense_Mutation p.A227V 0.09 deleterious(0.04) possibly_damaging(0.7) TCGA-CV-A6JO-01 4 187518160 187518160 C G FAT1 Silent p.G4178G 0.13 TCGA-CV-A6JO-01 5 112929033 112929033 C A YTHDC2 Missense_Mutation p.Q1416K 0.13 tolerated(0.78) benign(0.003) TCGA-CV-A6JO-01 5 131923334 131923334 G T RAD50 Missense_Mutation p.K279N 0.14 deleterious(0.01) possibly_damaging(0.632) TCGA-CV-A6JO-01 5 13714705 13714705 C G DNAH5 Missense_Mutation p.E4312Q 0.14 possibly_damaging(0.728) TCGA-CV-A6JO-01 5 139193838 139193838 C T PSD2 Missense_Mutation p.P302L 0.16 tolerated(0.16) benign(0.297) TCGA-CV-A6JO-01 5 168189662 168189662 C T SLIT3 Missense_Mutation p.E498K 0.15 tolerated(0.06) benign(0.011) TCGA-CV-A6JO-01 5 35957502 35957502 G C UGT3A1 Missense_Mutation p.A288G 0.11 deleterious(0.04) possibly_damaging(0.685) TCGA-CV-A6JO-01 5 64859174 64859174 C T PPWD1 Missense_Mutation p.R13C 0.14 deleterious(0.05) benign(0.025) TCGA-CV-A6JO-01 5 78919085 78919085 G A PAPD4 Missense_Mutation p.D80N 0.07 tolerated(0.45) benign(0.005) TCGA-CV-A6JO-01 6 28227135 28227135 G A NKAPL 5'UTR 0.18 TCGA-CV-A6JO-01 6 32407793 32407802 ATCATGGGCT - HLA-DRA Frame_Shift_Del p.W24Kfs*5 0.11 TCGA-CV-A6JO-01 6 42946178 42946178 C T PEX6 Silent p.P237P 0.05 TCGA-CV-A6JO-01 6 44971521 44971521 T C SUPT3H Missense_Mutation p.S136G 0.10 tolerated(0.17) benign(0.004) TCGA-CV-A6JO-01 6 70642746 70642746 A G COL19A1 Silent p.S246S 0.16 TCGA-CV-A6JO-01 6 74228912 74228914 CAC - EEF1A1 In_Frame_Del p.G121del 0.11 TCGA-CV-A6JO-01 6 96652046 96652046 G A FUT9 Missense_Mutation p.D339N 0.09 tolerated(0.12) possibly_damaging(0.473) TCGA-CV-A6JO-01 7 65223278 65223278 C T SNORA22 3'Flank 0.11 TCGA-CV-A6JO-01 8 57025799 57025799 G A MOS Missense_Mutation p.P248L 0.08 deleterious(0) probably_damaging(1) TCGA-CV-A6JO-01 9 114304560 114304560 G A ZNF483 Missense_Mutation p.G449S 0.11 tolerated(1) probably_damaging(0.959) TCGA-CV-A6JO-01 9 116838907 116838907 C T AMBP Silent p.A77A 0.09 TCGA-CV-A6JO-01 9 130656799 130656799 C T ST6GALNAC6 Missense_Mutation p.G97S 0.09 probably_damaging(0.962) TCGA-CV-A6JO-01 9 140126191 140126191 C T SLC34A3 Missense_Mutation p.P13S 0.08 tolerated(0.16) probably_damaging(0.992) TCGA-CV-A6JO-01 9 72785561 72785561 C T MAMDC2 Intron 0.12 TCGA-CV-A6JO-01 X 50377685 50377685 G A SHROOM4 Missense_Mutation p.P463L 0.28 tolerated(0.11) benign(0.004) TCGA-CV-A6JT-01 10 21804944 21804944 T C SKIDA1 Missense_Mutation p.Q603R 0.17 tolerated_low_confidence(0.23) unknown(0) TCGA-CV-A6JT-01 10 81056307 81056307 C T ZMIZ1 Missense_Mutation p.P437L 0.27 benign(0.058) TCGA-CV-A6JT-01 11 55433284 55433284 G A OR4C6 Silent p.A214A 0.29 TCGA-CV-A6JT-01 11 64033987 64033987 G A PLCB3 Missense_Mutation p.R1126H 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-CV-A6JT-01 11 64978756 64978756 G A CAPN1 Silent p.%3D 0.34 TCGA-CV-A6JT-01 11 65562094 65562094 G A OVOL1 Missense_Mutation p.R135H 0.19 deleterious(0) probably_damaging(0.91) TCGA-CV-A6JT-01 12 100904824 100904824 G A NR1H4 Silent p.A126A 0.24 TCGA-CV-A6JT-01 12 104492254 104492254 C G HCFC2 Nonsense_Mutation p.S625* 0.22 TCGA-CV-A6JT-01 12 12514171 12514171 G A LOH12CR1 Silent p.K30K 0.24 TCGA-CV-A6JT-01 12 51102284 51102284 C T DIP2B Missense_Mutation p.A863V 0.24 tolerated(0.08) benign(0.397) TCGA-CV-A6JT-01 12 65445210 65445210 G C WIF1 Silent p.G353G 0.29 TCGA-CV-A6JT-01 13 103698389 103698389 C G SLC10A2 3'UTR 0.22 TCGA-CV-A6JT-01 13 88327756 88327756 C T SLITRK5 Missense_Mutation p.A38V 0.21 tolerated(0.47) benign(0.004) TCGA-CV-A6JT-01 14 24682634 24682634 G A CHMP4A Silent p.L47L 0.22 TCGA-CV-A6JT-01 14 75509149 75509149 G A MLH3 Silent p.S1104S 0.15 TCGA-CV-A6JT-01 15 25436411 25436411 C T SNORD115-11 3'Flank 0.24 TCGA-CV-A6JT-01 15 78922193 78922193 C T CHRNB4 Missense_Mutation p.A152T 0.24 deleterious(0.03) possibly_damaging(0.881) TCGA-CV-A6JT-01 15 91436545 91436545 G A FES Missense_Mutation p.R649H 0.20 deleterious(0) possibly_damaging(0.898) TCGA-CV-A6JT-01 16 31435812 31435812 G A ITGAD Missense_Mutation p.E1096K 0.19 tolerated(0.09) benign(0.017) TCGA-CV-A6JT-01 17 35879063 35879063 C G SYNRG Missense_Mutation p.V1309L 0.24 deleterious(0.01) benign(0.056) TCGA-CV-A6JT-01 17 40832539 40832539 G A CCR10 Missense_Mutation p.R41W 0.17 deleterious(0) probably_damaging(0.983) TCGA-CV-A6JT-01 17 74289637 74289637 C T QRICH2 Missense_Mutation p.G225R 0.26 deleterious(0) probably_damaging(0.932) TCGA-CV-A6JT-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.20 tolerated(0.09) benign(0.344) TCGA-CV-A6JT-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.18 deleterious(0) probably_damaging(0.992) TCGA-CV-A6JT-01 18 44268762 44268762 C A ST8SIA5 Missense_Mutation p.Q144H 0.30 possibly_damaging(0.537) TCGA-CV-A6JT-01 19 15072948 15072948 G A SLC1A6 Silent p.N267N 0.17 TCGA-CV-A6JT-01 19 17320428 17320428 G A MYO9B Silent p.R1886R 0.20 TCGA-CV-A6JT-01 19 3118953 3118953 C T GNA11 Missense_Mutation p.R213W 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A6JT-01 19 31768537 31768537 G A TSHZ3 Missense_Mutation p.P721L 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JT-01 19 51451987 51451987 A C KLK5 Missense_Mutation p.L212R 0.12 tolerated(0.47) benign(0.05) TCGA-CV-A6JT-01 19 54314025 54314025 G A NLRP12 Silent p.F296F 0.24 TCGA-CV-A6JT-01 19 55995271 55995271 C T ZNF628 Missense_Mutation p.P904L 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-CV-A6JT-01 1 155629623 155629623 G A YY1AP1 Missense_Mutation p.S831L 0.23 deleterious_low_confidence(0.04) benign(0.029) TCGA-CV-A6JT-01 1 27699998 27699998 G A FCN3 Silent p.N82N 0.20 TCGA-CV-A6JT-01 1 44477352 44477352 A C SLC6A9 Missense_Mutation p.F44V 0.24 tolerated_low_confidence(0.51) benign(0) TCGA-CV-A6JT-01 1 65858360 65858360 C T DNAJC6 Missense_Mutation p.A572V 0.07 tolerated(0.22) benign(0.002) TCGA-CV-A6JT-01 21 27071048 27071048 G C JAM2 Missense_Mutation p.E152Q 0.30 tolerated(0.24) possibly_damaging(0.646) TCGA-CV-A6JT-01 22 36708257 36708257 G A MYH9 Missense_Mutation p.P522L 0.25 probably_damaging(0.995) TCGA-CV-A6JT-01 2 179588160 179588160 G A TTN Missense_Mutation p.R7223C 0.25 TCGA-CV-A6JT-01 2 197597245 197597245 C T CCDC150 Missense_Mutation p.P1089S 0.21 tolerated(0.11) benign(0.186) TCGA-CV-A6JT-01 2 54856171 54856171 C A SPTBN1 Missense_Mutation p.L634M 0.31 deleterious(0) probably_damaging(0.997) TCGA-CV-A6JT-01 2 71795468 71795468 C T DYSF Missense_Mutation p.T955I 0.21 deleterious(0.01) possibly_damaging(0.66) TCGA-CV-A6JT-01 2 99156097 99156097 C A INPP4A Silent p.P259P 0.18 TCGA-CV-A6JT-01 3 105572430 105572430 G A CBLB Nonsense_Mutation p.Q83* 0.24 TCGA-CV-A6JT-01 3 197401259 197401259 C T KIAA0226 3'Flank 0.19 TCGA-CV-A6JT-01 3 42916010 42916010 C G CYP8B1 Missense_Mutation p.W433C 0.33 deleterious(0) probably_damaging(1) TCGA-CV-A6JT-01 4 106156747 106156747 C T TET2 Nonsense_Mutation p.R550* 0.17 TCGA-CV-A6JT-01 4 123844425 123844425 C T SPATA5 Missense_Mutation p.S43F 0.19 tolerated_low_confidence(0.24) benign(0.001) TCGA-CV-A6JT-01 4 176733372 176733372 C T GPM6A Missense_Mutation p.E3K 0.17 tolerated_low_confidence(0.18) benign(0.002) TCGA-CV-A6JT-01 4 83839311 83839311 A G THAP9 Missense_Mutation p.D649G 0.27 tolerated(0.22) benign(0.016) TCGA-CV-A6JT-01 5 140698574 140698574 G C TAF7 Silent p.L346L 0.59 TCGA-CV-A6JT-01 5 64020217 64020217 T G SREK1IP1 Missense_Mutation p.R154S 0.53 deleterious_low_confidence(0) unknown(0) TCGA-CV-A6JT-01 6 152651124 152651124 C T SYNE1 Nonsense_Mutation p.W4899* 0.25 TCGA-CV-A6JT-01 6 161519420 161519420 C T MAP3K4 Missense_Mutation p.S1212F 0.25 tolerated(0.71) possibly_damaging(0.498) TCGA-CV-A6JT-01 6 45073695 45073695 C A SUPT3H Missense_Mutation p.L61F 0.14 deleterious(0) probably_damaging(0.993) TCGA-CV-A6JT-01 6 76744433 76744433 C G IMPG1 Missense_Mutation p.D125H 0.21 deleterious(0.01) possibly_damaging(0.875) TCGA-CV-A6JT-01 6 97677200 97677200 G A MMS22L Silent p.L537L 0.27 TCGA-CV-A6JT-01 7 100807317 100807317 G A VGF Nonsense_Mutation p.Q270* 0.19 TCGA-CV-A6JT-01 7 117003786 117003786 T A ASZ1 Missense_Mutation p.E431V 0.26 tolerated(0.08) benign(0.12) TCGA-CV-A6JT-01 7 32594194 32594194 C T AVL9 Missense_Mutation p.L199F 0.38 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JT-01 7 32598541 32598541 G C AVL9 Missense_Mutation p.G227A 0.36 deleterious(0.04) probably_damaging(0.972) TCGA-CV-A6JT-01 7 80378274 80378274 G A SEMA3C Silent p.P594P 0.31 TCGA-CV-A6JT-01 9 104357132 104357132 G T PPP3R2 Silent p.G27G 0.23 TCGA-CV-A6JT-01 9 139960108 139960108 T C SAPCD2 Missense_Mutation p.K233E 0.25 deleterious(0.01) benign(0.11) TCGA-CV-A6JT-01 X 91133553 91133553 G A PCDH11X Missense_Mutation p.V772M 0.41 deleterious(0) probably_damaging(0.931) TCGA-CV-A6JU-01 10 103558659 103558659 T G MGEA5 Missense_Mutation p.Q583H 0.10 tolerated(1) benign(0.001) TCGA-CV-A6JU-01 10 115978244 115978244 G T TDRD1 Missense_Mutation p.D799Y 0.21 deleterious(0) probably_damaging(0.979) TCGA-CV-A6JU-01 10 127512150 127512150 T A BCCIP Silent p.R8R 0.14 TCGA-CV-A6JU-01 10 134624471 134624471 C A TTC40 Missense_Mutation p.E2522D 0.13 tolerated(0.2) benign(0.003) TCGA-CV-A6JU-01 10 29812476 29812476 T C SVIL Missense_Mutation p.M1023V 0.17 tolerated_low_confidence(0.23) benign(0) TCGA-CV-A6JU-01 10 52573711 52573712 - T A1CF Frame_Shift_Ins p.R418Kfs*7 0.14 TCGA-CV-A6JU-01 10 70141059 70141059 G C RUFY2 Missense_Mutation p.T381S 0.15 tolerated(0.06) benign(0.087) TCGA-CV-A6JU-01 10 8100553 8100553 C A GATA3 Missense_Mutation p.A176D 0.46 tolerated(0.45) benign(0.046) TCGA-CV-A6JU-01 10 88466305 88466305 C T LDB3 Intron 0.22 TCGA-CV-A6JU-01 10 88912464 88912465 - T FAM35A Frame_Shift_Ins p.C452Lfs*17 0.15 TCGA-CV-A6JU-01 10 95552569 95552569 C A LGI1 Silent p.T191T 0.17 TCGA-CV-A6JU-01 11 111407388 111407388 A G C11orf88 Intron 0.21 TCGA-CV-A6JU-01 11 112087036 112087036 G A BCO2 Missense_Mutation p.V537M 0.35 deleterious(0.02) probably_damaging(0.995) TCGA-CV-A6JU-01 11 114113009 114113009 G A ZBTB16 Missense_Mutation p.R525H 0.05 deleterious(0) probably_damaging(0.968) TCGA-CV-A6JU-01 11 123676227 123676227 C A OR6M1 Silent p.V277V 0.20 TCGA-CV-A6JU-01 11 123847819 123847819 C G OR10S1 Missense_Mutation p.D194H 0.24 deleterious(0) probably_damaging(1) TCGA-CV-A6JU-01 11 17429971 17429971 G T ABCC8 Missense_Mutation p.L930I 0.30 tolerated(0.17) benign(0.122) TCGA-CV-A6JU-01 11 4608934 4608934 G A OR52I2 Missense_Mutation p.V298I 0.26 tolerated(0.81) benign(0.004) TCGA-CV-A6JU-01 11 61504723 61504723 C T DAGLA Missense_Mutation p.L481F 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JU-01 11 65266460 65266460 T C MALAT1 RNA 0.20 TCGA-CV-A6JU-01 11 92523356 92523356 C T FAT3 Missense_Mutation p.A1528V 0.11 probably_damaging(0.986) TCGA-CV-A6JU-01 12 110874930 110874930 T C ARPC3 Missense_Mutation p.I71V 0.08 tolerated(0.81) benign(0.004) TCGA-CV-A6JU-01 12 111893958 111893958 G A ATXN2 Missense_Mutation p.P1207S 0.18 probably_damaging(0.999) TCGA-CV-A6JU-01 12 120262979 120262981 ATA - CIT In_Frame_Del p.I315del 0.15 TCGA-CV-A6JU-01 12 123067338 123067338 C T KNTC1 Silent p.H1023H 0.17 TCGA-CV-A6JU-01 12 13828685 13828685 C T GRIN2B Nonsense_Mutation p.W373* 0.14 TCGA-CV-A6JU-01 12 47172111 47172112 - A SLC38A4 Frame_Shift_Ins p.C345Lfs*4 0.16 TCGA-CV-A6JU-01 12 52699156 52699156 C T KRT86 Missense_Mutation p.R290W 0.18 deleterious(0.05) probably_damaging(0.954) TCGA-CV-A6JU-01 12 53495921 53495921 C T IGFBP6 Silent p.S231S 0.27 TCGA-CV-A6JU-01 12 57113701 57113701 G A NACA Missense_Mutation p.S538F 0.22 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-CV-A6JU-01 12 95603235 95603235 T C FGD6 Missense_Mutation p.M609V 0.22 tolerated(1) benign(0) TCGA-CV-A6JU-01 13 100518604 100518604 C A CLYBL Silent p.R249R 0.25 TCGA-CV-A6JU-01 13 32527154 32527154 A G EEF1DP3 RNA 0.17 TCGA-CV-A6JU-01 13 43986996 43986996 G A ENOX1 Nonsense_Mutation p.Q19* 0.14 TCGA-CV-A6JU-01 14 102470995 102470995 G C DYNC1H1 Missense_Mutation p.G1675A 0.12 possibly_damaging(0.58) TCGA-CV-A6JU-01 14 106091116 106091116 C A IGHG4 Missense_Mutation p.Q227H 0.07 deleterious(0.05) benign(0.024) TCGA-CV-A6JU-01 14 23345929 23345930 - A LRP10 Frame_Shift_Ins p.I487Dfs*31 0.13 TCGA-CV-A6JU-01 14 24113650 24113650 G A DHRS2 Silent p.A191A 0.17 TCGA-CV-A6JU-01 14 24641964 24641964 C T REC8 Silent p.Y33Y 0.20 TCGA-CV-A6JU-01 14 38679517 38679517 C G SSTR1 Missense_Mutation p.S308W 0.20 deleterious(0.03) probably_damaging(0.963) TCGA-CV-A6JU-01 14 59834304 59834304 G A DAAM1 Missense_Mutation p.R1005H 0.20 tolerated(0.08) possibly_damaging(0.475) TCGA-CV-A6JU-01 14 74769677 74769677 G A ABCD4 5'UTR 0.29 TCGA-CV-A6JU-01 14 97031283 97031299 CATTCTCAGAAAACATC - PAPOLA Splice_Site p.X715_splice 0.11 TCGA-CV-A6JU-01 15 22933783 22933783 C T CYFIP1 Silent p.Y234Y 0.24 TCGA-CV-A6JU-01 15 25496006 25496006 G C SNORD115-44 RNA 0.19 TCGA-CV-A6JU-01 15 25953436 25953436 C G ATP10A Missense_Mutation p.G786R 0.18 tolerated(0.11) possibly_damaging(0.515) TCGA-CV-A6JU-01 15 28261263 28261263 C G OCA2 Missense_Mutation p.E293Q 0.19 tolerated(0.11) benign(0.013) TCGA-CV-A6JU-01 15 48062700 48062700 G A SEMA6D Missense_Mutation p.R647Q 0.12 tolerated(0.35) benign(0.009) TCGA-CV-A6JU-01 15 52668694 52668694 T A MYO5A Missense_Mutation p.Y757F 0.22 deleterious(0.01) benign(0.021) TCGA-CV-A6JU-01 15 54435232 54435232 G T UNC13C Nonsense_Mutation p.E1001* 0.14 TCGA-CV-A6JU-01 16 10032121 10032121 G A GRIN2A Silent p.D234D 0.16 TCGA-CV-A6JU-01 16 66945907 66945907 G A CDH16 Missense_Mutation p.P562L 0.28 tolerated(0.11) benign(0.224) TCGA-CV-A6JU-01 17 10258301 10258301 T C MYH13 Missense_Mutation p.E271G 0.16 deleterious(0) probably_damaging(0.995) TCGA-CV-A6JU-01 17 29663706 29663706 T C NF1 Silent p.P2067P 0.19 TCGA-CV-A6JU-01 17 38922789 38922789 C T KRT26 Missense_Mutation p.R462Q 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.83) TCGA-CV-A6JU-01 17 39021183 39021183 C T KRT12 Missense_Mutation p.V228I 0.20 deleterious(0.01) probably_damaging(0.956) TCGA-CV-A6JU-01 17 45299149 45299149 C G MYL4 Missense_Mutation p.L139V 0.24 deleterious(0) probably_damaging(0.994) TCGA-CV-A6JU-01 17 61972422 61972422 A G CSH1 Missense_Mutation p.M205T 0.18 tolerated(0.09) benign(0.001) TCGA-CV-A6JU-01 17 63010657 63010657 G A GNA13 Silent p.V284V 0.22 TCGA-CV-A6JU-01 17 63848087 63848087 C T CEP112 Silent p.Q743Q 0.24 TCGA-CV-A6JU-01 17 67081772 67081772 A T ABCA6 Silent p.A1341A 0.18 TCGA-CV-A6JU-01 17 6719166 6719166 A T TEKT1 Missense_Mutation p.S158T 0.26 tolerated(0.59) benign(0.002) TCGA-CV-A6JU-01 17 72588172 72588172 G C C17orf77 5'UTR 0.11 TCGA-CV-A6JU-01 17 7330595 7330595 C T C17orf74 Missense_Mutation p.P429S 0.23 deleterious(0.01) probably_damaging(0.932) TCGA-CV-A6JU-01 17 7578176 7578176 C A TP53 Splice_Site p.X224_splice 0.20 TCGA-CV-A6JU-01 18 5438039 5438039 G A EPB41L3 Silent p.I200I 0.17 TCGA-CV-A6JU-01 18 60051996 60051996 G C TNFRSF11A Missense_Mutation p.G527A 0.22 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JU-01 19 10610334 10610335 - A KEAP1 Frame_Shift_Ins p.E126* 0.17 TCGA-CV-A6JU-01 19 15276206 15276207 - A NOTCH3 Frame_Shift_Ins p.A1930Cfs*2 0.10 TCGA-CV-A6JU-01 19 18468195 18468195 G C PGPEP1 Silent p.L69L 0.21 TCGA-CV-A6JU-01 19 34180193 34180193 G A CHST8 Missense_Mutation p.R9Q 0.15 tolerated(0.05) possibly_damaging(0.537) TCGA-CV-A6JU-01 19 44661768 44661768 T C ZNF234 Silent p.V533V 0.19 TCGA-CV-A6JU-01 19 46388616 46388616 C T IRF2BP1 Silent p.G139G 0.22 TCGA-CV-A6JU-01 19 49341311 49341311 C T PLEKHA4 Silent p.L680L 0.14 TCGA-CV-A6JU-01 19 53740266 53740266 T G ZNF677 Missense_Mutation p.K572Q 0.20 deleterious(0.03) probably_damaging(0.981) TCGA-CV-A6JU-01 19 55175417 55175417 T G LILRB4 Nonsense_Mutation p.Y92* 0.14 TCGA-CV-A6JU-01 19 55708511 55708511 G T PTPRH Missense_Mutation p.S655Y 0.32 benign(0.225) TCGA-CV-A6JU-01 19 56296912 56296912 A T NLRP11 3'UTR 0.22 TCGA-CV-A6JU-01 19 58863848 58863848 C T A1BG Silent p.V138V 0.20 TCGA-CV-A6JU-01 19 6702151 6702151 C T C3 Missense_Mutation p.M809I 0.21 tolerated(0.16) benign(0.006) TCGA-CV-A6JU-01 19 7677137 7677137 C A CAMSAP3 Silent p.P613P 0.21 TCGA-CV-A6JU-01 19 7689197 7689197 G A XAB2 Silent p.R319R 0.13 TCGA-CV-A6JU-01 19 929709 929709 G A ARID3A Missense_Mutation p.A61T 0.29 deleterious_low_confidence(0) unknown(0) TCGA-CV-A6JU-01 1 12359287 12359287 G T VPS13D Missense_Mutation p.R2021L 0.25 possibly_damaging(0.545) TCGA-CV-A6JU-01 1 12884772 12884772 T G PRAMEF11 3'UTR 0.19 TCGA-CV-A6JU-01 1 152192014 152192014 C G HRNR Missense_Mutation p.Q697H 0.20 unknown(0) TCGA-CV-A6JU-01 1 154561914 154561914 G C ADAR Missense_Mutation p.S898C 0.23 deleterious(0) probably_damaging(0.932) TCGA-CV-A6JU-01 1 154919109 154919109 C T PBXIP1 Silent p.R347R 0.18 TCGA-CV-A6JU-01 1 176983983 176983983 C G ASTN1 Missense_Mutation p.M489I 0.21 tolerated(0.36) possibly_damaging(0.713) TCGA-CV-A6JU-01 1 17983200 17983200 A G ARHGEF10L Missense_Mutation p.S953G 0.05 tolerated(0.07) benign(0.011) TCGA-CV-A6JU-01 1 196879474 196879474 G A CFHR4 Missense_Mutation p.R287K 0.11 tolerated(0.75) benign(0.01) TCGA-CV-A6JU-01 1 200817705 200817705 C G CAMSAP2 Missense_Mutation p.T603S 0.26 tolerated(0.48) benign(0.395) TCGA-CV-A6JU-01 1 240975222 240975222 A T RGS7 Missense_Mutation p.L360I 0.21 tolerated(0.26) probably_damaging(0.996) TCGA-CV-A6JU-01 1 247582236 247582236 A G NLRP3 Missense_Mutation p.E47G 0.14 deleterious(0) possibly_damaging(0.864) TCGA-CV-A6JU-01 1 248436216 248436216 G C OR2T33 Missense_Mutation p.R301G 0.19 deleterious(0) benign(0.406) TCGA-CV-A6JU-01 1 52117695 52117695 A T OSBPL9 Missense_Mutation p.R48S 0.26 deleterious(0) probably_damaging(0.997) TCGA-CV-A6JU-01 1 78408471 78408471 C T NEXN Missense_Mutation p.S662F 0.13 deleterious(0) possibly_damaging(0.866) TCGA-CV-A6JU-01 1 94506780 94506780 T C ABCA4 Silent p.Q1169Q 0.12 TCGA-CV-A6JU-01 1 9661266 9661266 G T TMEM201 Missense_Mutation p.S237I 0.17 tolerated(0.1) possibly_damaging(0.653) TCGA-CV-A6JU-01 20 13839998 13839998 T C SEL1L2 Intron 0.15 TCGA-CV-A6JU-01 20 2776663 2776663 G A CPXM1 Missense_Mutation p.P463S 0.13 deleterious(0.01) possibly_damaging(0.813) TCGA-CV-A6JU-01 20 30585199 30585199 G A XKR7 Missense_Mutation p.R560Q 0.19 deleterious(0.03) benign(0.201) TCGA-CV-A6JU-01 20 31609590 31609590 G T BPIFB2 Missense_Mutation p.E440D 0.36 tolerated(0.11) benign(0.134) TCGA-CV-A6JU-01 20 398246 398246 G A RBCK1 Missense_Mutation p.A82T 0.10 tolerated(0.09) benign(0.434) TCGA-CV-A6JU-01 20 49204343 49204343 C A FAM65C Silent p.S912S 0.14 TCGA-CV-A6JU-01 20 62729634 62729634 G T OPRL1 Nonsense_Mutation p.E199* 0.21 TCGA-CV-A6JU-01 21 15889300 15889300 G A SAMSN1 Silent p.G132G 0.29 TCGA-CV-A6JU-01 21 43164160 43164169 CTCAGAGGAG - RIPK4 Frame_Shift_Del p.S357Pfs*63 0.12 TCGA-CV-A6JU-01 22 42461828 42461828 C T NAGA Missense_Mutation p.V225M 0.15 deleterious(0.02) benign(0.233) TCGA-CV-A6JU-01 2 131688556 131688556 A T ARHGEF4 Missense_Mutation p.E9V 0.17 deleterious_low_confidence(0.01) benign(0.001) TCGA-CV-A6JU-01 2 143713795 143713795 A G KYNU Silent p.P153P 0.13 TCGA-CV-A6JU-01 2 18765857 18765857 C T NT5C1B Missense_Mutation p.D276N 0.22 deleterious_low_confidence(0.03) benign(0.006) TCGA-CV-A6JU-01 2 18765864 18765864 C G NT5C1B Missense_Mutation p.E273D 0.33 tolerated_low_confidence(0.24) benign(0.001) TCGA-CV-A6JU-01 2 207027035 207027035 C G EEF1B2 Intron 0.16 TCGA-CV-A6JU-01 2 73492756 73492756 A G FBXO41 Silent p.R406R 0.22 TCGA-CV-A6JU-01 2 99179952 99179952 C A INPP4A Missense_Mutation p.P632Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JU-01 3 105260482 105260482 G T ALCAM Missense_Mutation p.Q288H 0.19 deleterious(0.05) benign(0.021) TCGA-CV-A6JU-01 3 123166800 123166800 C T ADCY5 Missense_Mutation p.G198E 0.30 tolerated(0.5) benign(0.003) TCGA-CV-A6JU-01 3 131268816 131268816 T A CPNE4 Missense_Mutation p.E426V 0.20 tolerated(0.09) possibly_damaging(0.583) TCGA-CV-A6JU-01 3 167000073 167000073 G A ZBBX Missense_Mutation p.T736I 0.31 deleterious(0) possibly_damaging(0.795) TCGA-CV-A6JU-01 3 179052224 179052224 C G ZNF639 3'UTR 0.12 TCGA-CV-A6JU-01 3 189582020 189582020 G T TP63 Splice_Site p.X194_splice 0.35 TCGA-CV-A6JU-01 3 25635061 25635065 TAAAT CA RARB In_Frame_Del p.L285_N286delinsP 0.26 TCGA-CV-A6JU-01 3 49159484 49159484 T C LAMB2 Missense_Mutation p.T1606A 0.20 tolerated(0.76) benign(0.003) TCGA-CV-A6JU-01 3 50330867 50330867 G A HYAL3 Missense_Mutation p.A355V 0.21 tolerated(0.37) benign(0.022) TCGA-CV-A6JU-01 3 74350566 74350566 A T CNTN3 Missense_Mutation p.V693E 0.23 tolerated(0.08) possibly_damaging(0.717) TCGA-CV-A6JU-01 4 120193152 120193152 A G USP53 Missense_Mutation p.M713V 0.20 tolerated(1) benign(0) TCGA-CV-A6JU-01 4 140264024 140264024 A T NAA15 Silent p.A149A 0.17 TCGA-CV-A6JU-01 4 187530348 187530348 C A FAT1 Missense_Mutation p.D3399Y 0.31 probably_damaging(0.998) TCGA-CV-A6JU-01 4 74863726 74863726 T C CXCL5 Intron 0.19 TCGA-CV-A6JU-01 4 83828954 83828955 - T THAP9 Frame_Shift_Ins p.Y200Lfs*2 0.21 TCGA-CV-A6JU-01 4 85696000 85696000 C T WDFY3 Missense_Mutation p.G1576D 0.21 tolerated(0.07) possibly_damaging(0.461) TCGA-CV-A6JU-01 4 87744876 87744876 G C SLC10A6 Missense_Mutation p.L367V 0.16 tolerated_low_confidence(0.54) benign(0.003) TCGA-CV-A6JU-01 4 88370348 88370348 T C NUDT9 Silent p.H195H 0.23 TCGA-CV-A6JU-01 4 90170587 90170587 T C GPRIN3 Silent p.G225G 0.11 TCGA-CV-A6JU-01 5 10981948 10981948 A C CTNND2 Silent p.T1118T 0.20 TCGA-CV-A6JU-01 5 131531174 131531174 C A P4HA2 Splice_Site p.X458_splice 0.14 TCGA-CV-A6JU-01 5 150947521 150947522 CT - FAT2 Frame_Shift_Del p.E324Vfs*48 0.19 TCGA-CV-A6JU-01 5 161302606 161302606 T G GABRA1 Missense_Mutation p.F173V 0.24 deleterious(0) benign(0.017) TCGA-CV-A6JU-01 5 176707765 176707766 - T NSD1 Frame_Shift_Ins p.P1942Sfs*4 0.18 TCGA-CV-A6JU-01 5 177715332 177715332 C T COL23A1 Missense_Mutation p.G145D 0.25 deleterious(0) unknown(0) TCGA-CV-A6JU-01 6 107361060 107361061 - T C6orf203 Frame_Shift_Ins p.Y38Lfs*15 0.21 TCGA-CV-A6JU-01 6 27805970 27805970 C T HIST1H2AK Missense_Mutation p.V50M 0.13 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-CV-A6JU-01 6 27860923 27860923 G C HIST1H2AM Missense_Mutation p.S2C 0.06 deleterious_low_confidence(0.02) benign(0.184) TCGA-CV-A6JU-01 6 36169027 36169027 A G BRPF3 Missense_Mutation p.I310V 0.12 tolerated(0.27) benign(0.08) TCGA-CV-A6JU-01 6 37299060 37299060 G C TBC1D22B 3'UTR 0.15 TCGA-CV-A6JU-01 6 38793961 38793961 G A DNAH8 Missense_Mutation p.A1076T 0.25 benign(0.006) TCGA-CV-A6JU-01 6 38939413 38939413 G C DNAH8 Missense_Mutation p.R3949P 0.19 probably_damaging(0.998) TCGA-CV-A6JU-01 6 56482206 56482206 T C DST Intron 0.19 TCGA-CV-A6JU-01 6 89891711 89891711 T A GABRR1 Missense_Mutation p.T288S 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-CV-A6JU-01 7 149497458 149497458 C A SSPO RNA 0.31 TCGA-CV-A6JU-01 7 45002319 45002319 G T MYO1G 3'UTR 0.26 TCGA-CV-A6JU-01 7 5632884 5632885 - G FSCN1 Frame_Shift_Ins p.A107Gfs*44 0.32 TCGA-CV-A6JU-01 7 82595769 82595769 T A PCLO Missense_Mutation p.Q1112L 0.24 unknown(0) TCGA-CV-A6JU-01 7 83119453 83119453 T A SEMA3E Nonsense_Mutation p.R85* 0.16 TCGA-CV-A6JU-01 7 89909017 89909017 G C C7orf63 Missense_Mutation p.L394F 0.17 tolerated(0.07) possibly_damaging(0.632) TCGA-CV-A6JU-01 7 95222162 95222162 C A PDK4 Missense_Mutation p.V147F 0.21 tolerated(0.23) benign(0.004) TCGA-CV-A6JU-01 8 113237011 113237011 T G CSMD3 Missense_Mutation p.T3705P 0.41 deleterious(0) probably_damaging(0.996) TCGA-CV-A6JU-01 8 52321748 52321748 G A PXDNL Silent p.H812H 0.15 TCGA-CV-A6JU-01 9 131343203 131343203 G T SPTAN1 Silent p.L442L 0.22 TCGA-CV-A6JU-01 9 33900204 33900204 G T UBE2R2 Silent p.P99P 0.12 TCGA-CV-A6JU-01 9 8518352 8518352 T C PTPRD Missense_Mutation p.N347D 0.18 tolerated(0.11) probably_damaging(0.996) TCGA-CV-A6JU-01 X 100349725 100349725 T C TMEM35 Missense_Mutation p.L95P 0.17 deleterious(0) probably_damaging(0.93) TCGA-CV-A6JU-01 X 103267972 103267972 C T H2BFWT Silent p.R87R 0.15 TCGA-CV-A6JU-01 X 110653294 110653294 C A DCX Missense_Mutation p.R192S 0.15 deleterious(0.04) benign(0.198) TCGA-CV-A6JU-01 X 13337979 13337979 T C ATXN3L Silent p.G25G 0.11 TCGA-CV-A6JU-01 X 134947936 134947936 A T CT45A5 Missense_Mutation p.V130E 0.19 deleterious(0) benign(0.241) TCGA-CV-A6JU-01 X 153583376 153583376 C A FLNA Silent p.A1678A 0.13 TCGA-CV-A6JU-01 X 153609536 153609536 T G EMD Silent p.A248A 0.13 TCGA-CV-A6JU-01 X 19379653 19379653 G A MAP3K15 Silent p.D1246D 0.16 TCGA-CV-A6JU-01 X 31090069 31090069 A T FTHL17 Translation_Start_Site p.M1? 0.22 deleterious(0) probably_damaging(0.99) TCGA-CV-A6JU-01 X 47102104 47102104 G A USP11 Missense_Mutation p.R566H 0.25 deleterious(0) probably_damaging(1) TCGA-CV-A6JU-01 X 53224437 53224437 T C KDM5C Silent p.K1092K 0.27 TCGA-CV-A6JU-01 X 73068802 73068802 T C XIST RNA 0.21 TCGA-CV-A6JY-01 10 102738956 102738956 G C SEMA4G Missense_Mutation p.G304A 0.07 tolerated(0.35) benign(0.003) TCGA-CV-A6JY-01 10 112266802 112266802 G A DUSP5 Missense_Mutation p.R213Q 0.08 tolerated(0.15) benign(0.444) TCGA-CV-A6JY-01 10 17113533 17113533 T A CUBN Missense_Mutation p.E839D 0.35 tolerated(0.34) benign(0.044) TCGA-CV-A6JY-01 10 18276411 18276411 A T SLC39A12 Missense_Mutation p.Y367F 0.29 deleterious(0.01) possibly_damaging(0.855) TCGA-CV-A6JY-01 10 226065 226065 C T ZMYND11 Missense_Mutation p.T38I 0.16 deleterious(0.04) benign(0.036) TCGA-CV-A6JY-01 11 103780431 103780431 T A PDGFD Silent p.P368P 0.05 TCGA-CV-A6JY-01 11 55433016 55433016 G T OR4C6 Missense_Mutation p.C125F 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.852) TCGA-CV-A6JY-01 11 56467999 56467999 G A OR9G1 Missense_Mutation p.V46M 0.11 tolerated(0.21) benign(0.009) TCGA-CV-A6JY-01 11 61109957 61109957 G A DAK Missense_Mutation p.R227H 0.12 tolerated(0.05) benign(0.035) TCGA-CV-A6JY-01 11 62296029 62296029 G A AHNAK Missense_Mutation p.P1954S 0.08 possibly_damaging(0.803) TCGA-CV-A6JY-01 11 73008366 73008366 C T P2RY6 Missense_Mutation p.T268M 0.29 tolerated(0.08) benign(0.008) TCGA-CV-A6JY-01 11 8496558 8496558 G A STK33 5'UTR 0.33 TCGA-CV-A6JY-01 12 113645252 113645252 C A IQCD Missense_Mutation p.R240S 0.19 deleterious(0) possibly_damaging(0.557) TCGA-CV-A6JY-01 12 122361712 122361712 G A WDR66 Missense_Mutation p.R188Q 0.21 tolerated(1) benign(0.001) TCGA-CV-A6JY-01 12 53293635 53293635 C T KRT8 Missense_Mutation p.R330H 0.07 tolerated(0.55) benign(0.008) TCGA-CV-A6JY-01 12 56713674 56713674 C T PAN2 Missense_Mutation p.D978N 0.18 deleterious(0.01) probably_damaging(0.963) TCGA-CV-A6JY-01 13 32527206 32527206 C T EEF1DP3 RNA 0.17 TCGA-CV-A6JY-01 14 105411723 105411723 G A AHNAK2 Silent p.D3355D 0.15 TCGA-CV-A6JY-01 14 106552398 106552398 C G IGHV3-9 Missense_Mutation p.D81H 0.08 deleterious_low_confidence(0) benign(0.274) TCGA-CV-A6JY-01 14 20528494 20528494 C T OR4L1 Silent p.C97C 0.10 TCGA-CV-A6JY-01 14 23243308 23243308 C T SLC7A7 Silent p.P421P 0.17 TCGA-CV-A6JY-01 14 70712737 70712737 G T ADAM21P1 RNA 0.04 TCGA-CV-A6JY-01 15 41797046 41797046 C T LTK Missense_Mutation p.R682Q 0.23 tolerated_low_confidence(0.27) benign(0.027) TCGA-CV-A6JY-01 15 65239681 65239681 G A ANKDD1A Missense_Mutation p.E407K 0.21 deleterious(0.03) benign(0.056) TCGA-CV-A6JY-01 15 75116019 75116019 C T LMAN1L Missense_Mutation p.P440L 0.05 tolerated(0.26) benign(0.006) TCGA-CV-A6JY-01 16 2089926 2089926 C T NTHL1 Silent p.%3D 0.18 TCGA-CV-A6JY-01 16 28167759 28167759 T C XPO6 Missense_Mutation p.I245V 0.07 tolerated(0.75) benign(0.008) TCGA-CV-A6JY-01 16 30490668 30490668 C T ITGAL Silent p.N154N 0.07 TCGA-CV-A6JY-01 16 74425377 74425377 G T NPIPB15 Missense_Mutation p.G244V 0.09 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CV-A6JY-01 17 15496704 15496704 T C CDRT1 Missense_Mutation p.I651M 0.08 tolerated(1) benign(0.008) TCGA-CV-A6JY-01 17 27296946 27296946 C T SEZ6 Missense_Mutation p.G295R 0.34 deleterious(0) probably_damaging(0.972) TCGA-CV-A6JY-01 17 30349045 30349045 G T LRRC37B Nonsense_Mutation p.E294* 0.28 TCGA-CV-A6JY-01 17 34171897 34171897 G T TAF15 Nonsense_Mutation p.G532* 0.28 TCGA-CV-A6JY-01 17 34171898 34171898 G T TAF15 Missense_Mutation p.G532V 0.28 deleterious_low_confidence(0) unknown(0) TCGA-CV-A6JY-01 17 37565024 37565024 C T MED1 Silent p.G1150G 0.09 TCGA-CV-A6JY-01 17 42476499 42476499 C T GPATCH8 Nonsense_Mutation p.W982* 0.32 TCGA-CV-A6JY-01 17 48594771 48594771 C G MYCBPAP Missense_Mutation p.P151A 0.22 deleterious(0.02) probably_damaging(1) TCGA-CV-A6JY-01 17 48685231 48685231 C T CACNA1G Missense_Mutation p.S1519L 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-CV-A6JY-01 17 7578495 7578496 - A TP53 Frame_Shift_Ins p.W146Vfs*3 0.30 TCGA-CV-A6JY-01 19 17322584 17322584 G A MYO9B Missense_Mutation p.G2020D 0.11 deleterious(0) probably_damaging(0.974) TCGA-CV-A6JY-01 19 36380799 36380799 G A NFKBID Missense_Mutation p.P294L 0.07 deleterious(0.03) benign(0.006) TCGA-CV-A6JY-01 19 39521925 39521925 C T FBXO27 Missense_Mutation p.D134N 0.10 tolerated(0.8) benign(0.03) TCGA-CV-A6JY-01 19 48917266 48917266 G T GRIN2D Silent p.T368T 0.13 TCGA-CV-A6JY-01 19 56539850 56539850 G A NLRP5 Missense_Mutation p.E751K 0.04 tolerated(0.11) benign(0.232) TCGA-CV-A6JY-01 19 59028764 59028764 C T ZBTB45 Missense_Mutation p.V93I 0.11 tolerated(0.35) benign(0.286) TCGA-CV-A6JY-01 19 8495604 8495604 C A MARCH2 Missense_Mutation p.F145L 0.32 deleterious(0.04) possibly_damaging(0.757) TCGA-CV-A6JY-01 1 103352614 103352614 T A COL11A1 Splice_Site p.X1537_splice 0.28 TCGA-CV-A6JY-01 1 109954752 109954752 C A PSMA5 Missense_Mutation p.V116L 0.14 tolerated(0.32) benign(0.183) TCGA-CV-A6JY-01 1 158261979 158261979 A G CD1C Missense_Mutation p.Q145R 0.09 deleterious(0.03) benign(0.014) TCGA-CV-A6JY-01 1 177199063 177199063 C G BRINP2 Silent p.A17A 0.26 TCGA-CV-A6JY-01 1 207010044 207010044 A G IL19 Missense_Mutation p.T51A 0.24 tolerated(1) benign(0.001) TCGA-CV-A6JY-01 1 230822855 230822855 G T COG2 Missense_Mutation p.D519Y 0.28 deleterious(0) probably_damaging(1) TCGA-CV-A6JY-01 1 24077647 24077647 C A TCEB3 Silent p.T210T 0.05 TCGA-CV-A6JY-01 1 32622463 32622463 C T KPNA6 Missense_Mutation p.R50W 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JY-01 1 34006739 34006739 C T CSMD2 Missense_Mutation p.V3006I 0.17 tolerated(0.23) benign(0.013) TCGA-CV-A6JY-01 1 39924151 39924151 G A MACF1 Missense_Mutation p.R5003H 0.10 benign(0.248) TCGA-CV-A6JY-01 1 43772899 43772899 G A TIE1 Missense_Mutation p.E243K 0.05 deleterious(0) benign(0.446) TCGA-CV-A6JY-01 1 97270476 97270476 T C PTBP2 Missense_Mutation p.V342A 0.08 deleterious(0.05) benign(0.004) TCGA-CV-A6JY-01 20 210311 210311 G A DEFB129 Missense_Mutation p.E151K 0.29 tolerated(0.83) benign(0.006) TCGA-CV-A6JY-01 20 31022592 31022592 C T ASXL1 Nonsense_Mutation p.R693* 0.30 TCGA-CV-A6JY-01 20 39987369 39987369 C T LPIN3 Missense_Mutation p.R807W 0.06 deleterious(0) probably_damaging(0.989) TCGA-CV-A6JY-01 20 40045413 40045413 G C CHD6 Missense_Mutation p.L2101V 0.23 deleterious(0.02) benign(0.213) TCGA-CV-A6JY-01 21 46950806 46950806 C A SLC19A1 Silent p.T343T 0.29 TCGA-CV-A6JY-01 22 29736732 29736732 G A AP1B1 Silent p.L637L 0.23 TCGA-CV-A6JY-01 22 42190404 42190404 C T MEI1 Missense_Mutation p.R1153W 0.07 deleterious(0) probably_damaging(0.997) TCGA-CV-A6JY-01 2 102476320 102476320 G T MAP4K4 Silent p.A566A 0.31 TCGA-CV-A6JY-01 2 112540010 112540010 A G ANAPC1 Missense_Mutation p.M1713T 0.22 tolerated(0.15) benign(0.304) TCGA-CV-A6JY-01 2 167322318 167322318 T C SCN7A Missense_Mutation p.R282G 0.06 tolerated(0.39) benign(0.023) TCGA-CV-A6JY-01 2 191064798 191064798 G A C2orf88 Missense_Mutation p.C71Y 0.10 deleterious(0.02) benign(0.004) TCGA-CV-A6JY-01 2 202677280 202677280 G A CDK15 Missense_Mutation p.R148Q 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-CV-A6JY-01 2 241685200 241685200 G A KIF1A Missense_Mutation p.A1110V 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-CV-A6JY-01 2 24484594 24484594 T A ITSN2 Silent p.V791V 0.14 TCGA-CV-A6JY-01 2 70919573 70919573 G A ADD2 Missense_Mutation p.R223C 0.18 deleterious(0) probably_damaging(0.975) TCGA-CV-A6JY-01 2 80530771 80530771 G A LRRTM1 Silent p.T58T 0.37 TCGA-CV-A6JY-01 2 95537349 95537349 G A TEKT4 Missense_Mutation p.E9K 0.17 deleterious_low_confidence(0.03) benign(0.075) TCGA-CV-A6JY-01 3 147108953 147108953 C T ZIC4 Missense_Mutation p.V307M 0.10 deleterious(0.01) probably_damaging(0.964) TCGA-CV-A6JY-01 3 168833285 168833285 C T MECOM Missense_Mutation p.R669Q 0.19 deleterious(0) possibly_damaging(0.726) TCGA-CV-A6JY-01 3 182923983 182923983 C T MCF2L2 Missense_Mutation p.R911H 0.24 tolerated(0.15) benign(0.002) TCGA-CV-A6JY-01 3 56647723 56647723 G A CCDC66 Missense_Mutation p.R504H 0.09 deleterious(0.01) probably_damaging(0.961) TCGA-CV-A6JY-01 4 123377470 123377470 C A IL2 Missense_Mutation p.Q42H 0.20 tolerated(0.09) possibly_damaging(0.881) TCGA-CV-A6JY-01 4 15063859 15063859 T A CPEB2 Missense_Mutation p.L951H 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-A6JY-01 4 153250891 153250910 CAAAACTGTAAGCATGTGAT - FBXW7 Frame_Shift_Del p.I384Wfs*2 0.23 TCGA-CV-A6JY-01 4 4199805 4199805 A G OTOP1 Silent p.C252C 0.23 TCGA-CV-A6JY-01 4 42122294 42122294 C T BEND4 Silent p.L388L 0.09 TCGA-CV-A6JY-01 5 127624856 127624856 C A FBN2 Missense_Mutation p.M2200I 0.15 tolerated(0.32) benign(0.102) TCGA-CV-A6JY-01 5 149225445 149225445 G A PPARGC1B Missense_Mutation p.R980Q 0.10 tolerated(0.31) benign(0.006) TCGA-CV-A6JY-01 5 149602233 149602233 T A CAMK2A 3'Flank 0.44 TCGA-CV-A6JY-01 5 150274905 150274905 C T ZNF300 3'UTR 0.55 TCGA-CV-A6JY-01 5 167891965 167891965 C T WWC1 Missense_Mutation p.R1056W 0.16 deleterious(0) possibly_damaging(0.742) TCGA-CV-A6JY-01 5 39331863 39331863 T C C9 Missense_Mutation p.Y177C 0.09 deleterious(0) probably_damaging(0.992) TCGA-CV-A6JY-01 5 56526784 56526784 C T GPBP1 Missense_Mutation p.R66C 0.30 tolerated(0.1) benign(0.109) TCGA-CV-A6JY-01 5 74325952 74325952 C A GCNT4 5'UTR 0.24 TCGA-CV-A6JY-01 5 78260265 78260265 G A ARSB Missense_Mutation p.L222F 0.11 deleterious(0.01) benign(0.2) TCGA-CV-A6JY-01 5 80409621 80409621 A G RASGRF2 Missense_Mutation p.I784M 0.14 tolerated_low_confidence(0.08) benign(0.044) TCGA-CV-A6JY-01 5 82834812 82834812 C A VCAN Nonsense_Mutation p.S1997* 0.17 TCGA-CV-A6JY-01 6 168352535 168352535 G A MLLT4 Missense_Mutation p.D1494N 0.21 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-CV-A6JY-01 6 76376581 76376581 G A SENP6 Missense_Mutation p.R383H 0.11 tolerated(0.85) benign(0.001) TCGA-CV-A6JY-01 6 88853569 88853569 T C CNR1 3'UTR 0.08 TCGA-CV-A6JY-01 7 100549862 100549862 C T MUC3A Missense_Mutation p.T148M 0.07 tolerated(0.16) unknown(0) TCGA-CV-A6JY-01 7 82595653 82595653 G A PCLO Missense_Mutation p.P1151S 0.24 unknown(0) TCGA-CV-A6JY-01 7 96639226 96639226 C T DLX6 Missense_Mutation p.A250V 0.21 tolerated(0.09) possibly_damaging(0.552) TCGA-CV-A6JY-01 8 96166876 96166876 C A PLEKHF2 Silent p.R202R 0.17 TCGA-CV-A6JY-01 9 100080769 100080769 C T CCDC180 Silent p.I372I 0.20 TCGA-CV-A6JY-01 9 114429103 114429103 G T DNAJC25-GNG10 Missense_Mutation p.Q115H 0.11 deleterious(0) benign(0.183) TCGA-CV-A6JY-01 9 130884674 130884674 G A PTGES2 Silent p.F324F 0.22 TCGA-CV-A6JY-01 9 138439759 138439759 C T OBP2A Missense_Mutation p.T107M 0.16 deleterious(0) possibly_damaging(0.533) TCGA-CV-A6JY-01 9 139413171 139413171 A T NOTCH1 Missense_Mutation p.V324D 0.06 deleterious(0) probably_damaging(0.992) TCGA-CV-A6JY-01 X 123554573 123554573 G A TENM1 Nonsense_Mutation p.R1524* 0.48 TCGA-CV-A6JY-01 X 125298775 125298775 C T DCAF12L2 Missense_Mutation p.R378H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JY-01 X 133087227 133087227 G C GPC3 Missense_Mutation p.Q63E 0.12 deleterious(0) possibly_damaging(0.47) TCGA-CV-A6JY-01 X 34961658 34961658 C T FAM47B Missense_Mutation p.P237L 0.09 tolerated(0.06) benign(0.089) TCGA-CV-A6JY-01 X 83141598 83141598 A T CYLC1 3'UTR 0.38 TCGA-CV-A6JZ-01 10 17278316 17278316 C T VIM Silent p.L433L 0.11 TCGA-CV-A6JZ-01 10 26310634 26310634 C G MYO3A Intron 0.14 TCGA-CV-A6JZ-01 10 43293939 43293941 GAT - BMS1 In_Frame_Del p.D707del 0.20 TCGA-CV-A6JZ-01 10 49654477 49654477 C T ARHGAP22 Missense_Mutation p.G701E 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A6JZ-01 10 52913073 52913073 T A PRKG1 Missense_Mutation p.L154Q 0.20 tolerated(0.29) benign(0.02) TCGA-CV-A6JZ-01 10 60546833 60546833 A C BICC1 Missense_Mutation p.S180R 0.22 deleterious(0) probably_damaging(0.993) TCGA-CV-A6JZ-01 10 73122322 73122322 C T SLC29A3 Missense_Mutation p.T462I 0.06 tolerated(0.11) benign(0.008) TCGA-CV-A6JZ-01 10 74692226 74692226 G A OIT3 Missense_Mutation p.G528S 0.20 tolerated(0.42) benign(0.03) TCGA-CV-A6JZ-01 10 82039992 82039992 G A MAT1A Silent p.A162A 0.23 TCGA-CV-A6JZ-01 11 117389306 117389306 G A DSCAML1 Missense_Mutation p.S522L 0.23 tolerated(0.4) benign(0.396) TCGA-CV-A6JZ-01 11 117784600 117784600 G A TMPRSS13 Missense_Mutation p.S234F 0.09 tolerated(0.13) probably_damaging(0.993) TCGA-CV-A6JZ-01 11 1216386 1216386 G T MUC5AC RNA 0.10 TCGA-CV-A6JZ-01 11 134014829 134014829 C A JAM3 Silent p.S184S 0.35 TCGA-CV-A6JZ-01 11 419731 419731 T A ANO9 Splice_Site p.X596_splice 0.24 TCGA-CV-A6JZ-01 11 5474954 5474954 C T OR51I2 Missense_Mutation p.P79L 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JZ-01 11 55406374 55406374 C A OR4P4 Missense_Mutation p.P181T 0.48 deleterious(0) probably_damaging(1) TCGA-CV-A6JZ-01 11 55406375 55406375 C A OR4P4 Missense_Mutation p.P181H 0.46 deleterious(0.01) probably_damaging(1) TCGA-CV-A6JZ-01 11 55703423 55703423 G A OR5I1 Missense_Mutation p.L152F 0.11 tolerated(0.27) benign(0) TCGA-CV-A6JZ-01 11 55735541 55735541 A G OR10AG1 Silent p.I133I 0.12 TCGA-CV-A6JZ-01 11 55735566 55735566 A G OR10AG1 Missense_Mutation p.L125P 0.08 deleterious(0) probably_damaging(0.962) TCGA-CV-A6JZ-01 11 55735735 55735735 T G OR10AG1 Missense_Mutation p.I69L 0.18 tolerated(1) benign(0.007) TCGA-CV-A6JZ-01 11 55735878 55735878 A G OR10AG1 Missense_Mutation p.I21T 0.16 tolerated(0.09) benign(0.01) TCGA-CV-A6JZ-01 11 57069412 57069412 G A TNKS1BP1 Missense_Mutation p.R1614W 0.13 deleterious(0) probably_damaging(0.958) TCGA-CV-A6JZ-01 11 59828646 59828646 G A MS4A3 Missense_Mutation p.E5K 0.17 tolerated(0.15) benign(0.063) TCGA-CV-A6JZ-01 11 59939680 59939680 G T MS4A6A 3'Flank 0.24 TCGA-CV-A6JZ-01 11 65338137 65338137 C T SSSCA1 Missense_Mutation p.R28W 0.14 deleterious(0) probably_damaging(0.99) TCGA-CV-A6JZ-01 11 6790036 6790036 T C OR2AG2 Missense_Mutation p.I51M 0.06 tolerated(1) benign(0) TCGA-CV-A6JZ-01 11 68125191 68125191 A T LRP5 Missense_Mutation p.I188F 0.27 deleterious(0) benign(0.42) TCGA-CV-A6JZ-01 11 83770484 83770484 C T DLG2 Missense_Mutation p.E265K 0.12 tolerated(0.07) probably_damaging(0.975) TCGA-CV-A6JZ-01 11 88780494 88780494 T C GRM5 Missense_Mutation p.T183A 0.10 tolerated(0.17) benign(0.083) TCGA-CV-A6JZ-01 12 11214007 11214007 T C TAS2R46 Missense_Mutation p.H296R 0.04 deleterious(0.02) benign(0.003) TCGA-CV-A6JZ-01 12 129822330 129822330 A G TMEM132D Missense_Mutation p.I383T 0.15 deleterious(0) benign(0.02) TCGA-CV-A6JZ-01 12 132249039 132249039 G A SFSWAP Missense_Mutation p.E587K 0.10 deleterious(0.04) probably_damaging(0.996) TCGA-CV-A6JZ-01 12 47629134 47629134 C T PCED1B Silent p.R96R 0.14 TCGA-CV-A6JZ-01 12 56993064 56993064 A C BAZ2A Missense_Mutation p.F1753V 0.26 tolerated(0.42) benign(0.05) TCGA-CV-A6JZ-01 12 6619511 6619511 C A NCAPD2 Intron 0.14 TCGA-CV-A6JZ-01 14 21992981 21992981 C T SALL2 Missense_Mutation p.R294Q 0.14 tolerated(0.23) probably_damaging(0.99) TCGA-CV-A6JZ-01 14 30194874 30194874 C - PRKD1 Frame_Shift_Del p.E91Nfs*27 0.10 TCGA-CV-A6JZ-01 14 74766971 74766971 C T ABCD4 Silent p.R13R 0.15 TCGA-CV-A6JZ-01 14 79433711 79433711 A T NRXN3 Missense_Mutation p.I607F 0.19 deleterious(0.04) possibly_damaging(0.838) TCGA-CV-A6JZ-01 16 2230946 2230946 G A CASKIN1 Missense_Mutation p.P808L 0.15 probably_damaging(0.994) TCGA-CV-A6JZ-01 16 30666035 30666035 G A PRR14 Silent p.P248P 0.19 TCGA-CV-A6JZ-01 16 65005520 65005520 A T CDH11 Missense_Mutation p.I535N 0.15 tolerated(0.25) benign(0.08) TCGA-CV-A6JZ-01 16 67338385 67338385 C T KCTD19 Nonsense_Mutation p.W130* 0.15 TCGA-CV-A6JZ-01 17 54452067 54452067 G T ANKFN1 Missense_Mutation p.R304M 0.14 deleterious(0) possibly_damaging(0.819) TCGA-CV-A6JZ-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.29 deleterious(0) probably_damaging(0.993) TCGA-CV-A6JZ-01 17 8526320 8526320 G C MYH10 Missense_Mutation p.P82R 0.28 probably_damaging(0.999) TCGA-CV-A6JZ-01 19 12060399 12060399 C T ZNF700 Silent p.A520A 0.21 TCGA-CV-A6JZ-01 19 12125872 12125872 G A ZNF433 Nonsense_Mutation p.R604* 0.11 TCGA-CV-A6JZ-01 19 16957917 16957917 G A SIN3B Missense_Mutation p.R240Q 0.05 tolerated(0.23) benign(0.007) TCGA-CV-A6JZ-01 19 20728474 20728474 C G ZNF737 Missense_Mutation p.G179R 0.20 deleterious(0.02) probably_damaging(0.966) TCGA-CV-A6JZ-01 19 30936565 30936565 G T ZNF536 Missense_Mutation p.G699V 0.17 deleterious(0.01) probably_damaging(1) TCGA-CV-A6JZ-01 19 3198880 3198880 C T NCLN Silent p.A227A 0.09 TCGA-CV-A6JZ-01 19 54297215 54297215 G A NLRP12 3'UTR 0.36 TCGA-CV-A6JZ-01 19 55143049 55143049 G A LILRB1 Missense_Mutation p.E57K 0.04 tolerated(0.09) benign(0.017) TCGA-CV-A6JZ-01 19 9063043 9063043 C A MUC16 Missense_Mutation p.A8135S 0.14 unknown(0) TCGA-CV-A6JZ-01 1 116287494 116287494 C T CASQ2 Missense_Mutation p.V92M 0.14 deleterious(0.05) possibly_damaging(0.721) TCGA-CV-A6JZ-01 1 147084947 147084947 T C BCL9 Missense_Mutation p.S107P 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-CV-A6JZ-01 1 169796918 169796918 C A C1orf112 Missense_Mutation p.S355Y 0.17 deleterious(0) possibly_damaging(0.642) TCGA-CV-A6JZ-01 1 180853241 180853241 C T XPR1 3'UTR 0.21 TCGA-CV-A6JZ-01 1 185191077 185191077 G T SWT1 Missense_Mutation p.V740F 0.14 tolerated(0.06) benign(0.235) TCGA-CV-A6JZ-01 1 202194570 202194570 C A LGR6 Missense_Mutation p.L78I 0.16 tolerated(1) benign(0.173) TCGA-CV-A6JZ-01 1 226822564 226822564 G A ITPKB Silent p.F883F 0.19 TCGA-CV-A6JZ-01 1 234742819 234742819 T C IRF2BP2 3'UTR 0.15 TCGA-CV-A6JZ-01 1 247695767 247695767 A T OR2C3 Missense_Mutation p.L16Q 0.21 deleterious(0) possibly_damaging(0.781) TCGA-CV-A6JZ-01 1 26883512 26883512 G A RPS6KA1 Silent p.K344K 0.17 TCGA-CV-A6JZ-01 1 43917513 43917513 C T HYI Missense_Mutation p.A171T 0.07 tolerated(0.07) benign(0.259) TCGA-CV-A6JZ-01 1 45295175 45295184 AAGCGTTCTC - PTCH2 Frame_Shift_Del p.E369Pfs*40 0.19 TCGA-CV-A6JZ-01 1 5923971 5923971 C T NPHP4 Silent p.R1373R 0.18 TCGA-CV-A6JZ-01 1 62455839 62455839 G T INADL Splice_Site p.X1224_splice 0.28 TCGA-CV-A6JZ-01 1 6639390 6639390 G A TAS1R1 Missense_Mutation p.E758K 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A6JZ-01 1 89225962 89225962 A T PKN2 Missense_Mutation p.N136I 0.19 tolerated(0.1) benign(0.285) TCGA-CV-A6JZ-01 20 30898400 30898400 G A KIF3B Missense_Mutation p.A274T 0.07 tolerated(0.09) possibly_damaging(0.712) TCGA-CV-A6JZ-01 20 52192996 52192996 A T ZNF217 Silent p.S769S 0.31 TCGA-CV-A6JZ-01 20 60967494 60967494 A T CABLES2 Missense_Mutation p.F348I 0.10 deleterious(0) probably_damaging(1) TCGA-CV-A6JZ-01 21 33949074 33949074 C T TCP10L 3'UTR 0.14 TCGA-CV-A6JZ-01 21 42866455 42866455 C T TMPRSS2 Silent p.P59P 0.20 TCGA-CV-A6JZ-01 22 37387530 37387530 T A TEX33 Missense_Mutation p.D246V 0.23 deleterious(0) possibly_damaging(0.904) TCGA-CV-A6JZ-01 22 42475742 42475742 G A SMDT1 5'UTR 0.24 TCGA-CV-A6JZ-01 2 133403122 133403122 A T GPR39 Silent p.S435S 0.10 TCGA-CV-A6JZ-01 2 152425879 152425879 T C NEB Missense_Mutation p.Y5813C 0.15 probably_damaging(1) TCGA-CV-A6JZ-01 2 155711289 155711289 G T KCNJ3 Missense_Mutation p.G324C 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A6JZ-01 2 179523482 179523482 T C TTN Missense_Mutation p.K12498R 0.16 TCGA-CV-A6JZ-01 2 179666894 179666894 G A TTN Missense_Mutation p.A89V 0.15 TCGA-CV-A6JZ-01 2 191894445 191894445 C T STAT4 3'UTR 0.19 TCGA-CV-A6JZ-01 2 21231802 21231802 G T APOB Silent p.S2646S 0.13 TCGA-CV-A6JZ-01 2 217123991 217123991 G A MARCH4 3'UTR 0.19 TCGA-CV-A6JZ-01 2 26950718 26950721 TGGC - KCNK3 Frame_Shift_Del p.M156Tfs*91 0.14 TCGA-CV-A6JZ-01 2 79350375 79350375 C A REG1A 3'UTR 0.19 TCGA-CV-A6JZ-01 2 85818955 85818955 G A VAMP5 Silent p.L37L 0.16 TCGA-CV-A6JZ-01 3 124117545 124117545 G A KALRN Missense_Mutation p.D723N 0.48 deleterious(0.02) unknown(0) TCGA-CV-A6JZ-01 3 179298935 179298935 C A ACTL6A Nonsense_Mutation p.S318* 0.11 TCGA-CV-A6JZ-01 3 183470001 183470001 G A YEATS2 Silent p.K370K 0.10 TCGA-CV-A6JZ-01 3 196281517 196281517 A G WDR53 Silent p.C214C 0.51 TCGA-CV-A6JZ-01 3 37367906 37367906 A G GOLGA4 Missense_Mutation p.E1532G 0.16 possibly_damaging(0.89) TCGA-CV-A6JZ-01 3 52597473 52597473 C A PBRM1 Missense_Mutation p.L1279F 0.05 tolerated(0.16) possibly_damaging(0.765) TCGA-CV-A6JZ-01 4 122063059 122063059 G A TNIP3 Missense_Mutation p.P343L 0.07 deleterious(0.04) benign(0.023) TCGA-CV-A6JZ-01 4 149357812 149357812 T C NR3C2 Silent p.K67K 0.25 TCGA-CV-A6JZ-01 4 187542734 187542734 G C FAT1 Nonsense_Mutation p.S1669* 0.21 TCGA-CV-A6JZ-01 4 1985349 1985350 - T NELFA Frame_Shift_Ins p.I470Nfs*39 0.10 TCGA-CV-A6JZ-01 4 2958424 2958424 C T NOP14 Missense_Mutation p.D149N 0.16 deleterious(0.01) probably_damaging(0.924) TCGA-CV-A6JZ-01 4 42590348 42590348 T G ATP8A1 Splice_Site p.X175_splice 0.10 TCGA-CV-A6JZ-01 4 72897718 72897718 C T NPFFR2 Missense_Mutation p.L34F 0.11 tolerated_low_confidence(0.37) possibly_damaging(0.587) TCGA-CV-A6JZ-01 5 112878079 112878079 G A YTHDC2 Silent p.V458V 0.36 TCGA-CV-A6JZ-01 5 140683196 140683196 C T SLC25A2 Silent p.S79S 0.40 TCGA-CV-A6JZ-01 5 145883031 145883031 C T TCERG1 Missense_Mutation p.R826C 0.26 deleterious(0) unknown(0) TCGA-CV-A6JZ-01 5 147862694 147862694 G A HTR4 3'UTR 0.17 TCGA-CV-A6JZ-01 5 178030700 178030700 A T CLK4 Missense_Mutation p.M455K 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-A6JZ-01 5 43299025 43299025 T C HMGCS1 Missense_Mutation p.K15E 0.22 tolerated(0.35) benign(0.05) TCGA-CV-A6JZ-01 6 117861858 117861858 G A DCBLD1 Missense_Mutation p.D377N 0.17 deleterious(0.04) possibly_damaging(0.728) TCGA-CV-A6JZ-01 6 139222223 139222223 T A ECT2L Missense_Mutation p.H851Q 0.15 tolerated(0.13) possibly_damaging(0.548) TCGA-CV-A6JZ-01 6 29141532 29141532 G A OR2J2 Silent p.L40L 0.17 TCGA-CV-A6JZ-01 6 64408457 64408457 A T PHF3 Nonsense_Mutation p.R982* 0.19 TCGA-CV-A6JZ-01 6 76372993 76372993 A G SENP6 Silent p.L251L 0.27 TCGA-CV-A6JZ-01 7 116166689 116166689 G A CAV1 Silent p.K47K 0.12 TCGA-CV-A6JZ-01 7 126544619 126544619 G A GRM8 Silent p.A282A 0.12 TCGA-CV-A6JZ-01 7 126544682 126544682 T C GRM8 Silent p.E261E 0.17 TCGA-CV-A6JZ-01 7 138269520 138269521 - T TRIM24 Frame_Shift_Ins p.E994* 0.13 TCGA-CV-A6JZ-01 7 141750510 141750510 T A MGAM Missense_Mutation p.V884E 0.19 deleterious(0) possibly_damaging(0.467) TCGA-CV-A6JZ-01 7 88965122 88965122 T A ZNF804B Missense_Mutation p.S942R 0.23 tolerated(0.54) benign(0.032) TCGA-CV-A6JZ-01 7 94057098 94057098 A C COL1A2 Missense_Mutation p.N1143H 0.27 unknown(0) TCGA-CV-A6JZ-01 8 131880092 131880092 C A ADCY8 Missense_Mutation p.R737I 0.31 deleterious(0.02) benign(0) TCGA-CV-A6JZ-01 8 13357289 13357289 G T DLC1 Missense_Mutation p.L98I 0.23 deleterious_low_confidence(0) benign(0.033) TCGA-CV-A6JZ-01 8 2026915 2026915 T C MYOM2 Missense_Mutation p.F455L 0.20 deleterious(0.01) benign(0.12) TCGA-CV-A6JZ-01 8 2976018 2976018 G A CSMD1 Silent p.F2111F 0.16 TCGA-CV-A6JZ-01 8 55539430 55539430 C T RP1 Silent p.A996A 0.25 TCGA-CV-A6JZ-01 9 112899173 112899173 A G PALM2-AKAP2 Missense_Mutation p.E450G 0.30 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JZ-01 9 116823781 116823781 A G AMBP Missense_Mutation p.F259S 0.31 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JZ-01 9 133750435 133750435 C A ABL1 Silent p.V441V 0.10 TCGA-CV-A6JZ-01 9 37592529 37592529 T A TOMM5 Translation_Start_Site p.M1? 0.47 tolerated_low_confidence(0.05) benign(0.14) TCGA-CV-A6JZ-01 9 3937152 3937152 T A GLIS3 Missense_Mutation p.N583I 0.06 deleterious(0) probably_damaging(0.999) TCGA-CV-A6JZ-01 X 101912650 101912650 A G GPRASP1 Missense_Mutation p.Y1270C 0.31 deleterious(0) probably_damaging(1) TCGA-CV-A6JZ-01 X 102004842 102004842 A G BHLHB9 Missense_Mutation p.I307V 0.34 tolerated(1) probably_damaging(0.994) TCGA-CV-A6JZ-01 X 106243208 106243208 C T MORC4 5'UTR 0.33 TCGA-CV-A6JZ-01 X 135814307 135814307 A G ARHGEF6 Missense_Mutation p.V229A 0.46 tolerated(0.77) benign(0.002) TCGA-CV-A6JZ-01 X 53620323 53620323 C A HUWE1 Splice_Site p.X1247_splice 0.23 TCGA-CV-A6K0-01 10 133967303 133967303 G A JAKMIP3 Missense_Mutation p.R703Q 0.04 tolerated(1) benign(0.002) TCGA-CV-A6K0-01 10 45941110 45941110 G A ALOX5 Missense_Mutation p.R667Q 0.08 tolerated(0.19) benign(0.01) TCGA-CV-A6K0-01 11 68370842 68370842 G A PPP6R3 Missense_Mutation p.D778N 0.09 tolerated(0.09) possibly_damaging(0.713) TCGA-CV-A6K0-01 11 92087645 92087645 G T FAT3 Missense_Mutation p.M789I 0.06 benign(0.142) TCGA-CV-A6K0-01 12 65122744 65122744 G A GNS Missense_Mutation p.P398S 0.07 tolerated(0.06) benign(0.173) TCGA-CV-A6K0-01 14 64612904 64612904 G C SYNE2 Missense_Mutation p.S5201T 0.13 benign(0.318) TCGA-CV-A6K0-01 14 79111719 79111719 C T NRXN3 5'UTR 0.12 TCGA-CV-A6K0-01 17 3704505 3704505 C A ITGAE 5'UTR 0.12 TCGA-CV-A6K0-01 17 74005011 74005011 G A EVPL Silent p.F1425F 0.04 TCGA-CV-A6K0-01 18 56586443 56586443 G A ZNF532 Silent p.P308P 0.05 TCGA-CV-A6K0-01 18 56586604 56586604 G A ZNF532 Missense_Mutation p.R362H 0.05 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K0-01 18 67992202 67992202 G A SOCS6 Missense_Mutation p.D100N 0.05 deleterious_low_confidence(0) benign(0.015) TCGA-CV-A6K0-01 20 44569514 44569514 A G PCIF1 Missense_Mutation p.T152A 0.10 tolerated(0.78) benign(0) TCGA-CV-A6K0-01 2 131116497 131116497 G A PTPN18 Missense_Mutation p.G51S 0.07 deleterious(0.01) probably_damaging(0.922) TCGA-CV-A6K0-01 3 128526443 128526443 G C RAB7A Missense_Mutation p.E153Q 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A6K0-01 4 15504111 15504111 C T CC2D2A Missense_Mutation p.R103C 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CV-A6K0-01 4 69512788 69512788 C G UGT2B15 3'UTR 0.08 TCGA-CV-A6K0-01 5 154394712 154394712 C T KIF4B Silent p.N431N 0.06 TCGA-CV-A6K0-01 5 33947385 33947385 G A SLC45A2 Silent p.L417L 0.07 TCGA-CV-A6K0-01 6 31609355 31609355 T C BAG6 Silent p.T810T 0.06 TCGA-CV-A6K0-01 8 95690546 95690546 G A ESRP1 Silent p.A589A 0.06 TCGA-CV-A6K0-01 9 131115818 131115818 C G SLC27A4 Missense_Mutation p.P441R 0.07 deleterious(0) probably_damaging(1) TCGA-CV-A6K0-01 X 140995349 140995349 C A MAGEC1 Missense_Mutation p.S720Y 0.08 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-CV-A6K1-01 10 106074553 106074553 C T ITPRIP Silent p.Q419Q 0.38 TCGA-CV-A6K1-01 10 114136094 114136094 C T ACSL5 Silent p.L9L 0.28 TCGA-CV-A6K1-01 10 121196339 121196339 G A GRK5 Silent p.E305E 0.38 TCGA-CV-A6K1-01 10 123256095 123256095 G A FGFR2 Missense_Mutation p.S606L 0.29 deleterious(0) possibly_damaging(0.908) TCGA-CV-A6K1-01 10 125447681 125447681 C T GPR26 3'UTR 0.24 TCGA-CV-A6K1-01 10 128776216 128776216 G C DOCK1 Missense_Mutation p.W45C 0.31 deleterious(0) probably_damaging(0.983) TCGA-CV-A6K1-01 10 129676301 129676301 C T CLRN3 3'UTR 0.30 TCGA-CV-A6K1-01 10 134038745 134038745 G A STK32C Nonsense_Mutation p.R290* 0.25 TCGA-CV-A6K1-01 10 134628225 134628225 G - TTC40 Frame_Shift_Del p.P2405Lfs*5 0.11 TCGA-CV-A6K1-01 10 16562928 16562928 G - C1QL3 Frame_Shift_Del p.T46Sfs*65 0.38 TCGA-CV-A6K1-01 10 18276462 18276462 G A SLC39A12 Missense_Mutation p.G384E 0.57 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K1-01 10 18276463 18276463 G T SLC39A12 Silent p.G384G 0.57 TCGA-CV-A6K1-01 10 25314400 25314401 - T THNSL1 3'UTR 0.45 TCGA-CV-A6K1-01 10 29747238 29747238 C T SVIL Missense_Mutation p.E2195K 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-CV-A6K1-01 10 32740782 32740782 C T CCDC7 Missense_Mutation p.S71L 0.27 tolerated(0.07) probably_damaging(0.996) TCGA-CV-A6K1-01 10 47087490 47087490 G A NPY4R Missense_Mutation p.R236H 0.15 tolerated(0.13) benign(0.378) TCGA-CV-A6K1-01 10 50691445 50691445 C T ERCC6 Missense_Mutation p.E647K 0.28 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K1-01 10 64977085 64977085 T C JMJD1C Missense_Mutation p.Y187C 0.27 tolerated(0.1) benign(0.118) TCGA-CV-A6K1-01 10 68686347 68686347 T C LRRTM3 Splice_Site p.X2_splice 0.31 TCGA-CV-A6K1-01 10 68940199 68940199 A - CTNNA3 Frame_Shift_Del p.I308Tfs*40 0.27 TCGA-CV-A6K1-01 10 76868871 76868871 G T DUSP13 Silent p.A15A 0.25 TCGA-CV-A6K1-01 10 8006040 8006040 G T TAF3 Silent p.L189L 0.50 TCGA-CV-A6K1-01 10 84745264 84745264 C T NRG3 Missense_Mutation p.T665I 0.27 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-CV-A6K1-01 10 95168667 95168667 G A MYOF Silent p.R202R 0.31 TCGA-CV-A6K1-01 10 96084873 96084873 C A PLCE1 Intron 0.22 TCGA-CV-A6K1-01 10 99968077 99968077 G A R3HCC1L Missense_Mutation p.R69Q 0.34 tolerated(1) benign(0.001) TCGA-CV-A6K1-01 11 102477342 102477342 G T MMP20 Missense_Mutation p.P293T 0.24 deleterious(0.02) possibly_damaging(0.632) TCGA-CV-A6K1-01 11 103040868 103040868 T C DYNC2H1 Missense_Mutation p.L1667P 0.08 probably_damaging(1) TCGA-CV-A6K1-01 11 111166902 111166902 C T COLCA1 Missense_Mutation p.R101K 0.18 benign(0.14) TCGA-CV-A6K1-01 11 119003380 119003380 A G HINFP Missense_Mutation p.Y255C 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-CV-A6K1-01 11 119045286 119045286 G A NLRX1 Missense_Mutation p.R325H 0.34 deleterious(0.01) probably_damaging(0.937) TCGA-CV-A6K1-01 11 122666900 122666900 C T UBASH3B Nonsense_Mutation p.R384* 0.28 TCGA-CV-A6K1-01 11 122726431 122726431 T C CRTAM Silent p.D173D 0.30 TCGA-CV-A6K1-01 11 123894262 123894262 G A OR10G9 Silent p.P181P 0.35 TCGA-CV-A6K1-01 11 125770093 125770093 G - HYLS1 Frame_Shift_Del p.G278Vfs*26 0.18 TCGA-CV-A6K1-01 11 126432787 126432787 C A KIRREL3 Nonsense_Mutation p.G26* 0.23 TCGA-CV-A6K1-01 11 128350255 128350255 G T ETS1 Missense_Mutation p.F318L 0.13 tolerated(0.87) benign(0.137) TCGA-CV-A6K1-01 11 130288963 130288963 G C ADAMTS8 Missense_Mutation p.I315M 0.25 tolerated(0.05) benign(0.311) TCGA-CV-A6K1-01 11 133715268 133715268 C T SPATA19 Missense_Mutation p.S25N 0.31 tolerated(0.12) possibly_damaging(0.682) TCGA-CV-A6K1-01 11 134073581 134073581 G A NCAPD3 Missense_Mutation p.A479V 0.25 tolerated(0.31) benign(0.004) TCGA-CV-A6K1-01 11 1605932 1605932 C G KRTAP5-1 Missense_Mutation p.C183S 0.11 tolerated_low_confidence(0.6) unknown(0) TCGA-CV-A6K1-01 11 16824587 16824587 T C PLEKHA7 Missense_Mutation p.I697V 0.37 tolerated(1) benign(0.001) TCGA-CV-A6K1-01 11 18105248 18105248 C A SAAL1 Missense_Mutation p.R358L 0.37 deleterious(0.01) possibly_damaging(0.712) TCGA-CV-A6K1-01 11 1977672 1977672 G A MRPL23 3'UTR 0.30 TCGA-CV-A6K1-01 11 19914110 19914110 C A NAV2 Missense_Mutation p.P324T 0.31 deleterious_low_confidence(0.02) benign(0.083) TCGA-CV-A6K1-01 11 22294383 22294383 C T ANO5 Missense_Mutation p.L695F 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-CV-A6K1-01 11 22707310 22707310 G A GAS2 Missense_Mutation p.S81N 0.29 tolerated(0.58) benign(0.003) TCGA-CV-A6K1-01 11 22848833 22848833 C T SVIP Missense_Mutation p.V47M 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-CV-A6K1-01 11 27523058 27523058 G A LIN7C Missense_Mutation p.A71V 0.28 deleterious(0.01) possibly_damaging(0.453) TCGA-CV-A6K1-01 11 30255303 30255303 G A FSHB Missense_Mutation p.G116S 0.15 tolerated(0.36) probably_damaging(0.925) TCGA-CV-A6K1-01 11 33612946 33612946 A G KIAA1549L Missense_Mutation p.K1280R 0.29 tolerated(0.1) benign(0.186) TCGA-CV-A6K1-01 11 4624492 4624492 G A TRIM68 Nonsense_Mutation p.R169* 0.07 TCGA-CV-A6K1-01 11 47345332 47345332 C T MADD Silent p.C1496C 0.24 TCGA-CV-A6K1-01 11 47765706 47765706 G A FNBP4 Nonsense_Mutation p.R419* 0.30 TCGA-CV-A6K1-01 11 51411544 51411544 A G OR4A5 Silent p.Y284Y 0.44 TCGA-CV-A6K1-01 11 5270803 5270803 G T HBG1 Missense_Mutation p.P37Q 0.48 deleterious(0) probably_damaging(0.996) TCGA-CV-A6K1-01 11 55111114 55111114 C A OR4A16 Silent p.A146A 0.25 TCGA-CV-A6K1-01 11 556881 556881 G A C11orf35 Silent p.S310S 0.38 TCGA-CV-A6K1-01 11 5688930 5688930 G A TRIM5 Silent p.G252G 0.24 TCGA-CV-A6K1-01 11 59814553 59814553 G T OOSP2 3'UTR 0.25 TCGA-CV-A6K1-01 11 60541334 60541334 G A MS4A15 Missense_Mutation p.V175M 0.31 tolerated(0.2) benign(0.179) TCGA-CV-A6K1-01 11 61596024 61596024 G - FADS2 Frame_Shift_Del p.G56Afs*31 0.29 TCGA-CV-A6K1-01 11 64027601 64027601 C T PLCB3 Silent p.G542G 0.30 TCGA-CV-A6K1-01 11 64521785 64521785 G T PYGM Silent p.S344S 0.31 TCGA-CV-A6K1-01 11 6459602 6459602 G A HPX Silent p.G158G 0.32 TCGA-CV-A6K1-01 11 65396297 65396297 C A PCNXL3 Silent p.A1273A 0.43 TCGA-CV-A6K1-01 11 65650578 65650578 G A CTSW Missense_Mutation p.V262M 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K1-01 11 67052865 67052865 G A ADRBK1 Missense_Mutation p.V672M 0.16 tolerated_low_confidence(0.11) benign(0.017) TCGA-CV-A6K1-01 11 67069096 67069096 C T ANKRD13D Missense_Mutation p.L496F 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6K1-01 11 67206256 67206256 G A CORO1B Silent p.N410N 0.31 TCGA-CV-A6K1-01 11 67225048 67225048 C T CABP4 Silent p.G182G 0.31 TCGA-CV-A6K1-01 11 68664141 68664141 C - MRPL21 Frame_Shift_Del p.V80* 0.16 TCGA-CV-A6K1-01 11 70271437 70271437 G A CTTN Splice_Site p.X283_splice 0.30 TCGA-CV-A6K1-01 11 7091526 7091526 C A NLRP14 Nonsense_Mutation p.Y995* 0.28 TCGA-CV-A6K1-01 11 764345 764347 ACA - TALDO1 In_Frame_Del p.N299del 0.26 TCGA-CV-A6K1-01 11 76750627 76750627 C T B3GNT6 Missense_Mutation p.A11V 0.27 tolerated(0.39) benign(0) TCGA-CV-A6K1-01 11 85365269 85365269 C T TMEM126A Silent p.Y83Y 0.20 TCGA-CV-A6K1-01 11 88241840 88241840 A G GRM5 Missense_Mutation p.S1187P 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.744) TCGA-CV-A6K1-01 11 88780452 88780452 G T GRM5 Missense_Mutation p.Q197K 0.24 tolerated(0.07) probably_damaging(0.994) TCGA-CV-A6K1-01 11 94340739 94340739 C T PIWIL4 Silent p.I591I 0.30 TCGA-CV-A6K1-01 12 100567163 100567163 G C RP11-175P13.3 RNA 0.43 TCGA-CV-A6K1-01 12 108985269 108985269 G - TMEM119 3'UTR 0.44 TCGA-CV-A6K1-01 12 118588708 118588708 G A TAOK3 3'UTR 0.58 TCGA-CV-A6K1-01 12 121687599 121687599 C T CAMKK2 Silent p.P438P 0.68 TCGA-CV-A6K1-01 12 125587272 125587272 T C AACS Silent p.S206S 0.63 TCGA-CV-A6K1-01 12 132195761 132195761 C T SFSWAP 5'UTR 0.23 TCGA-CV-A6K1-01 12 16035623 16035623 C T STRAP 5'UTR 0.23 TCGA-CV-A6K1-01 12 2064701 2064701 T - DCP1B Frame_Shift_Del p.K183Rfs*2 0.25 TCGA-CV-A6K1-01 12 2659764 2659764 G C CACNA1C Intron 0.27 TCGA-CV-A6K1-01 12 2800387 2800387 T - CACNA1C 3'UTR 0.29 TCGA-CV-A6K1-01 12 40629508 40629508 T A LRRK2 Missense_Mutation p.L143Q 0.21 deleterious(0) probably_damaging(0.956) TCGA-CV-A6K1-01 12 48380126 48380126 C T COL2A1 Missense_Mutation p.G507E 0.89 probably_damaging(0.946) TCGA-CV-A6K1-01 12 49431874 49431874 C - KMT2D Frame_Shift_Del p.V3089Wfs*30 0.33 TCGA-CV-A6K1-01 12 5153527 5153527 G C KCNA5 Missense_Mutation p.D72H 0.44 tolerated_low_confidence(0.11) benign(0.417) TCGA-CV-A6K1-01 12 52647456 52647456 C T KRT7 3'Flank 0.76 TCGA-CV-A6K1-01 12 53400274 53400275 - C EIF4B Frame_Shift_Ins p.S4Lfs*7 0.44 TCGA-CV-A6K1-01 12 57603503 57603503 C - LRP1 Frame_Shift_Del p.F4098Lfs*29 0.46 TCGA-CV-A6K1-01 12 6103232 6103232 G C VWF Missense_Mutation p.L2132V 0.24 tolerated(1) benign(0.007) TCGA-CV-A6K1-01 12 6692405 6692405 C T CHD4 Missense_Mutation p.R1340H 0.28 deleterious(0) probably_damaging(0.954) TCGA-CV-A6K1-01 12 68720540 68720540 G T MDM1 Nonsense_Mutation p.S132* 0.57 TCGA-CV-A6K1-01 12 6925525 6925525 A C CD4 Missense_Mutation p.K304T 0.20 tolerated(0.45) benign(0.011) TCGA-CV-A6K1-01 12 81688766 81688766 C T PPFIA2 Missense_Mutation p.V925M 0.60 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K1-01 12 99478762 99478762 C T ANKS1B Missense_Mutation p.G856R 0.63 deleterious(0) probably_damaging(0.995) TCGA-CV-A6K1-01 13 109779932 109779932 C G MYO16 Intron 0.25 TCGA-CV-A6K1-01 13 20244461 20244461 A C MPHOSPH8 Missense_Mutation p.Q805H 0.33 tolerated(0.13) benign(0.002) TCGA-CV-A6K1-01 13 25453369 25453369 G A RNF17 Silent p.Q1606Q 0.27 TCGA-CV-A6K1-01 13 31803392 31803392 A - B3GALTL Frame_Shift_Del p.S80Afs*3 0.37 TCGA-CV-A6K1-01 13 32972342 32972342 C T BRCA2 Missense_Mutation p.S3231L 0.23 deleterious(0.04) benign(0.086) TCGA-CV-A6K1-01 13 36050199 36050199 G A MAB21L1 Missense_Mutation p.A26V 0.27 tolerated(0.26) benign(0.045) TCGA-CV-A6K1-01 13 36744834 36744834 G A SOHLH2 Missense_Mutation p.T441I 0.30 deleterious(0.01) benign(0.218) TCGA-CV-A6K1-01 13 37539850 37539850 C A ALG5 Missense_Mutation p.R212L 0.27 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 13 41704811 41704811 A - KBTBD6 Frame_Shift_Del p.C613Afs*34 0.21 TCGA-CV-A6K1-01 13 52971385 52971385 G A THSD1 Silent p.L335L 0.17 TCGA-CV-A6K1-01 13 60545113 60545113 G T DIAPH3 Missense_Mutation p.P611H 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6K1-01 13 61103347 61103347 A G TDRD3 Missense_Mutation p.N663S 0.32 tolerated(0.13) possibly_damaging(0.55) TCGA-CV-A6K1-01 14 105406587 105406587 G A AHNAK2 Silent p.D5067D 0.45 TCGA-CV-A6K1-01 14 19377681 19377681 C A OR11H12 Missense_Mutation p.Q30K 0.24 deleterious(0) benign(0.001) TCGA-CV-A6K1-01 14 20874441 20874441 T C TEP1 Missense_Mutation p.D229G 0.32 deleterious(0.05) benign(0.446) TCGA-CV-A6K1-01 14 21025078 21025078 A T RNASE9 Missense_Mutation p.F56I 0.29 tolerated(0.21) probably_damaging(0.943) TCGA-CV-A6K1-01 14 21058544 21058544 G A RNASE12 Silent p.G113G 0.31 TCGA-CV-A6K1-01 14 22294132 22294132 C T TRAV10 Missense_Mutation p.S79L 0.47 tolerated(0.05) benign(0.074) TCGA-CV-A6K1-01 14 23866797 23866797 G A MYH6 Silent p.G639G 0.43 TCGA-CV-A6K1-01 14 24546501 24546501 C T CPNE6 Missense_Mutation p.R480W 0.62 deleterious(0) probably_damaging(0.96) TCGA-CV-A6K1-01 14 31364640 31364640 C T STRN3 Missense_Mutation p.A791T 0.25 deleterious(0) probably_damaging(0.992) TCGA-CV-A6K1-01 14 31364661 31364661 T G STRN3 Missense_Mutation p.I784L 0.30 deleterious(0) probably_damaging(0.919) TCGA-CV-A6K1-01 14 39554995 39554995 C T SEC23A Missense_Mutation p.A267T 0.50 deleterious(0) probably_damaging(0.986) TCGA-CV-A6K1-01 14 71197058 71197058 C T MAP3K9 3'UTR 0.48 TCGA-CV-A6K1-01 14 71575657 71575657 C T PCNX Missense_Mutation p.A2213V 0.50 deleterious_low_confidence(0.01) benign(0.121) TCGA-CV-A6K1-01 14 76231057 76231057 G T TTLL5 Missense_Mutation p.E550D 0.58 tolerated(0.06) benign(0.033) TCGA-CV-A6K1-01 14 96851867 96851867 G A GSKIP Missense_Mutation p.G89D 0.07 deleterious(0.02) probably_damaging(0.978) TCGA-CV-A6K1-01 15 100340390 100340390 C G DNM1P46 RNA 0.21 TCGA-CV-A6K1-01 15 101606077 101606077 C T LRRK1 Missense_Mutation p.S1812F 0.24 deleterious_low_confidence(0.03) benign(0.002) TCGA-CV-A6K1-01 15 20649509 20649509 G T HERC2P3 RNA 0.21 TCGA-CV-A6K1-01 15 20649624 20649624 C T HERC2P3 RNA 0.19 TCGA-CV-A6K1-01 15 20649625 20649625 C T HERC2P3 RNA 0.18 TCGA-CV-A6K1-01 15 22866731 22866731 T C TUBGCP5 Silent p.F781F 0.19 TCGA-CV-A6K1-01 15 25486971 25486971 G A SNORD115-39 RNA 0.29 TCGA-CV-A6K1-01 15 25496064 25496064 C T SNORD115-44 RNA 0.27 TCGA-CV-A6K1-01 15 27128606 27128606 G C GABRA5 Silent p.T133T 0.32 TCGA-CV-A6K1-01 15 40661397 40661397 C G DISP2 Silent p.L1028L 0.36 TCGA-CV-A6K1-01 15 44853282 44853284 GAT - EIF3J In_Frame_Del p.D239del 0.33 TCGA-CV-A6K1-01 15 45783053 45783053 G T SLC30A4 Missense_Mutation p.L189M 0.38 tolerated(0.07) benign(0.174) TCGA-CV-A6K1-01 15 50226346 50226346 G C ATP8B4 Missense_Mutation p.Q441E 0.30 tolerated(0.14) benign(0.122) TCGA-CV-A6K1-01 15 54307541 54307541 A C UNC13C Missense_Mutation p.K814T 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.521) TCGA-CV-A6K1-01 15 65499223 65499223 C A CILP Missense_Mutation p.Q107H 0.42 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K1-01 15 74427382 74427382 T C ISLR2 3'UTR 0.30 TCGA-CV-A6K1-01 15 75142895 75142895 C T SCAMP2 Missense_Mutation p.A198T 0.25 deleterious(0) possibly_damaging(0.694) TCGA-CV-A6K1-01 15 81271482 81271482 G T MESDC2 3'UTR 0.30 TCGA-CV-A6K1-01 15 85666413 85666413 G A PDE8A Missense_Mutation p.E692K 0.29 tolerated(0.07) benign(0.029) TCGA-CV-A6K1-01 15 87531236 87531236 C A AGBL1 Missense_Mutation p.F1034L 0.35 tolerated_low_confidence(0.53) benign(0) TCGA-CV-A6K1-01 15 89811661 89811661 G A FANCI Missense_Mutation p.E263K 0.27 tolerated(0.07) possibly_damaging(0.784) TCGA-CV-A6K1-01 15 89811724 89811724 G A FANCI Missense_Mutation p.E284K 0.35 deleterious(0) possibly_damaging(0.786) TCGA-CV-A6K1-01 15 91491102 91491102 T C UNC45A Missense_Mutation p.L526P 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-CV-A6K1-01 15 96875743 96875743 A - NR2F2 Frame_Shift_Del p.K138Sfs*7 0.33 TCGA-CV-A6K1-01 15 99512851 99512851 G A PGPEP1L Silent p.A58A 0.33 TCGA-CV-A6K1-01 16 21060917 21060917 C T DNAH3 Silent p.A1478A 0.26 TCGA-CV-A6K1-01 16 27374287 27374287 G A IL4R Silent p.E538E 0.37 TCGA-CV-A6K1-01 16 29997177 29997177 C T TAOK2 Missense_Mutation p.R663W 0.42 deleterious(0) probably_damaging(0.978) TCGA-CV-A6K1-01 16 30664127 30664127 C T PRR14 Missense_Mutation p.S93L 0.40 tolerated_low_confidence(0.27) benign(0.002) TCGA-CV-A6K1-01 16 30982757 30982757 C T SETD1A Silent p.G1025G 0.25 TCGA-CV-A6K1-01 16 31308946 31308946 C T ITGAM Nonsense_Mutation p.Q490* 0.37 TCGA-CV-A6K1-01 16 31488684 31488684 G A TGFB1I1 Silent p.P391P 0.45 TCGA-CV-A6K1-01 16 33647499 33647499 C A RP11-812E19.9 Missense_Mutation p.G34V 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-A6K1-01 16 3739110 3739110 G A TRAP1 Silent p.A92A 0.34 TCGA-CV-A6K1-01 16 4500478 4500478 G A DNAJA3 Missense_Mutation p.G440D 0.29 deleterious(0.02) probably_damaging(1) TCGA-CV-A6K1-01 16 48138103 48138103 A G ABCC12 Silent p.A950A 0.26 TCGA-CV-A6K1-01 16 49669695 49669695 G A ZNF423 Missense_Mutation p.P1123L 0.28 deleterious(0.04) possibly_damaging(0.561) TCGA-CV-A6K1-01 16 64984670 64984670 C A CDH11 Missense_Mutation p.V632F 0.29 deleterious(0.01) benign(0.276) TCGA-CV-A6K1-01 16 69745127 69745127 T C NQO1 Missense_Mutation p.I193V 0.29 tolerated(1) benign(0.003) TCGA-CV-A6K1-01 16 70866892 70866892 C T HYDIN Silent p.E4586E 0.24 TCGA-CV-A6K1-01 16 72822363 72822363 G A ZFHX3 Missense_Mutation p.T3271M 0.31 unknown(0) TCGA-CV-A6K1-01 16 74685845 74685845 C G RFWD3 Missense_Mutation p.E232Q 0.20 tolerated(0.14) benign(0.432) TCGA-CV-A6K1-01 16 75512699 75512699 C T CHST6 Missense_Mutation p.R343H 0.32 tolerated(0.2) benign(0.009) TCGA-CV-A6K1-01 16 84213311 84213311 C T TAF1C Missense_Mutation p.D616N 0.22 tolerated(0.17) possibly_damaging(0.509) TCGA-CV-A6K1-01 16 86546540 86546540 G A FOXF1 Missense_Mutation p.R330Q 0.35 tolerated(0.06) possibly_damaging(0.509) TCGA-CV-A6K1-01 16 89788984 89788984 G A ZNF276 Missense_Mutation p.G84E 0.22 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 17 10301888 10301888 C T MYH8 Missense_Mutation p.E1351K 0.30 deleterious(0.01) possibly_damaging(0.861) TCGA-CV-A6K1-01 17 10419786 10419786 C - MYH1 Frame_Shift_Del p.K59Rfs*2 0.30 TCGA-CV-A6K1-01 17 10728547 10728547 C T PIRT 3'UTR 0.24 TCGA-CV-A6K1-01 17 1519990 1519990 C T SLC43A2 Nonsense_Mutation p.W78* 0.21 TCGA-CV-A6K1-01 17 17120445 17120446 - C FLCN Frame_Shift_Ins p.N372Efs*18 0.22 TCGA-CV-A6K1-01 17 25621434 25621434 C T WSB1 Missense_Mutation p.P5S 0.29 deleterious_low_confidence(0) benign(0.011) TCGA-CV-A6K1-01 17 27421969 27421969 C T MYO18A Silent p.L1498L 0.30 TCGA-CV-A6K1-01 17 27422004 27422004 C T MYO18A Missense_Mutation p.E1487K 0.29 deleterious(0) probably_damaging(0.947) TCGA-CV-A6K1-01 17 27422023 27422023 C A MYO18A Missense_Mutation p.Q1480H 0.25 tolerated(0.08) probably_damaging(0.967) TCGA-CV-A6K1-01 17 27977735 27977735 T C SSH2 Missense_Mutation p.D361G 0.35 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 17 30694866 30694866 C - ZNF207 Frame_Shift_Del p.P334Qfs*30 0.09 TCGA-CV-A6K1-01 17 32954000 32954000 G T TMEM132E Missense_Mutation p.V218L 0.34 tolerated(0.05) benign(0.004) TCGA-CV-A6K1-01 17 34074112 34074112 G - GAS2L2 Frame_Shift_Del p.T337Pfs*25 0.29 TCGA-CV-A6K1-01 17 34894126 34894127 - A PIGW Frame_Shift_Ins p.I393Nfs*11 0.22 TCGA-CV-A6K1-01 17 36484801 36484801 C G GPR179 Missense_Mutation p.D1551H 0.35 deleterious(0.01) probably_damaging(0.94) TCGA-CV-A6K1-01 17 36977254 36977254 C T CWC25 Missense_Mutation p.E31K 0.33 deleterious(0.01) benign(0.345) TCGA-CV-A6K1-01 17 36977261 36977261 C T CWC25 Silent p.Q28Q 0.34 TCGA-CV-A6K1-01 17 38569176 38569176 G T TOP2A Silent p.P208P 0.23 TCGA-CV-A6K1-01 17 4692356 4692356 C G GLTPD2 Nonsense_Mutation p.S17* 0.31 TCGA-CV-A6K1-01 17 47395006 47395006 G A ZNF652 Missense_Mutation p.R28C 0.34 tolerated(0.13) benign(0) TCGA-CV-A6K1-01 17 48046730 48046730 G - DLX4 5'UTR 0.27 TCGA-CV-A6K1-01 17 48603302 48603302 C A MYCBPAP Missense_Mutation p.L658M 0.05 deleterious(0.03) possibly_damaging(0.807) TCGA-CV-A6K1-01 17 5462268 5462268 T - NLRP1 Frame_Shift_Del p.K583Rfs*14 0.24 TCGA-CV-A6K1-01 17 54912400 54912400 C A DGKE Missense_Mutation p.L82M 0.34 tolerated(0.1) probably_damaging(0.995) TCGA-CV-A6K1-01 17 54985903 54985903 T C TRIM25 Missense_Mutation p.T207A 0.27 tolerated(0.17) benign(0.016) TCGA-CV-A6K1-01 17 56349243 56349243 G T MPO Silent p.A601A 0.29 TCGA-CV-A6K1-01 17 59934430 59934430 G A BRIP1 Missense_Mutation p.S123L 0.27 tolerated(0.44) benign(0.007) TCGA-CV-A6K1-01 17 61908487 61908487 G A PSMC5 Silent p.S257S 0.27 TCGA-CV-A6K1-01 17 62964362 62964362 C T AMZ2P1 RNA 0.29 TCGA-CV-A6K1-01 17 679028 679028 A G GLOD4 Silent p.S131S 0.18 TCGA-CV-A6K1-01 17 72428201 72428201 G A GPRC5C Silent p.Q8Q 0.27 TCGA-CV-A6K1-01 17 72832602 72832602 G T TMEM104 Missense_Mutation p.G423C 0.25 deleterious(0) probably_damaging(0.954) TCGA-CV-A6K1-01 17 74720008 74720008 G A JMJD6 Silent p.L217L 0.33 TCGA-CV-A6K1-01 17 7578176 7578176 C A TP53 Splice_Site p.X224_splice 0.62 TCGA-CV-A6K1-01 17 76212113 76212113 G A BIRC5 Silent p.T96T 0.27 TCGA-CV-A6K1-01 17 7762964 7762964 G A CYB5D1 3'UTR 0.43 TCGA-CV-A6K1-01 17 78115168 78115168 G C EIF4A3 Missense_Mutation p.Q108E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6K1-01 17 7813774 7813774 C T CHD3 Silent p.S1932S 0.22 TCGA-CV-A6K1-01 17 78184432 78184432 C T SGSH Missense_Mutation p.R443Q 0.25 tolerated(0.53) benign(0.004) TCGA-CV-A6K1-01 17 78263552 78263553 - G RNF213 Frame_Shift_Ins p.K345Efs*52 0.17 TCGA-CV-A6K1-01 17 7831114 7831114 G T KCNAB3 Silent p.S91S 0.25 TCGA-CV-A6K1-01 17 78797037 78797037 G T RPTOR Intron 0.24 TCGA-CV-A6K1-01 17 78972931 78972931 C T CHMP6 Missense_Mutation p.A195V 0.26 tolerated(0.26) benign(0.001) TCGA-CV-A6K1-01 17 7909801 7909801 C T GUCY2D Missense_Mutation p.R383W 0.30 deleterious(0.03) benign(0.011) TCGA-CV-A6K1-01 17 79193748 79193748 C T AZI1 Missense_Mutation p.A37T 0.31 deleterious(0.02) benign(0.043) TCGA-CV-A6K1-01 17 80043275 80043275 C T FASN Missense_Mutation p.A1376T 0.17 tolerated(0.09) benign(0.003) TCGA-CV-A6K1-01 17 80559213 80559213 C T FOXK2 Silent p.H607H 0.24 TCGA-CV-A6K1-01 17 80615805 80615805 C A RAB40B Silent p.V257V 0.27 TCGA-CV-A6K1-01 18 13057631 13057631 G C CEP192 Missense_Mutation p.V1386L 0.29 deleterious(0.03) benign(0.445) TCGA-CV-A6K1-01 18 13884786 13884786 G A MC2R Silent p.F244F 0.24 TCGA-CV-A6K1-01 18 30791983 30791983 A G CCDC178 Silent p.H705H 0.25 TCGA-CV-A6K1-01 18 47753777 47753777 C T CCDC11 Missense_Mutation p.A507T 0.62 tolerated(0.3) benign(0.018) TCGA-CV-A6K1-01 18 67836150 67836150 C T RTTN Missense_Mutation p.A544T 0.36 tolerated(0.33) benign(0.085) TCGA-CV-A6K1-01 18 74593273 74593273 C T ZNF236 Missense_Mutation p.P406S 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6K1-01 18 74680338 74680338 G T ZNF236 3'UTR 0.36 TCGA-CV-A6K1-01 19 1043811 1043811 A G ABCA7 Missense_Mutation p.N340D 0.28 tolerated(0.33) possibly_damaging(0.831) TCGA-CV-A6K1-01 19 10675657 10675657 C T KRI1 Silent p.K80K 0.29 TCGA-CV-A6K1-01 19 10923013 10923013 T C DNM2 Missense_Mutation p.V544A 0.50 deleterious(0.02) possibly_damaging(0.802) TCGA-CV-A6K1-01 19 11422814 11422814 G - TSPAN16 Splice_Site p.X202_splice 0.18 TCGA-CV-A6K1-01 19 13221024 13221024 G A TRMT1 Missense_Mutation p.R323C 0.28 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 19 14273691 14273691 G A LPHN1 Missense_Mutation p.R313C 0.26 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K1-01 19 14562741 14562741 C - PKN1 Frame_Shift_Del p.F366Sfs*2 0.35 TCGA-CV-A6K1-01 19 14705582 14705582 G A CLEC17A Missense_Mutation p.A125T 0.24 tolerated(0.9) benign(0) TCGA-CV-A6K1-01 19 15302405 15302405 C - NOTCH3 Frame_Shift_Del p.G289Vfs*83 0.24 TCGA-CV-A6K1-01 19 15905096 15905096 C T OR10H5 Missense_Mutation p.R80C 0.37 deleterious(0.02) benign(0.033) TCGA-CV-A6K1-01 19 17339665 17339665 G A OCEL1 Silent p.L242L 0.34 TCGA-CV-A6K1-01 19 19040112 19040116 CCCAG - HOMER3 3'UTR 0.29 TCGA-CV-A6K1-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.23 TCGA-CV-A6K1-01 19 19737403 19737403 G - LPAR2 Frame_Shift_Del p.R231Afs*36 0.28 TCGA-CV-A6K1-01 19 21132352 21132353 - A ZNF85 Frame_Shift_Ins p.C347Mfs*6 0.20 TCGA-CV-A6K1-01 19 21933815 21933815 C T ZNF100 Intron 0.29 TCGA-CV-A6K1-01 19 22575006 22575006 T A ZNF98 Missense_Mutation p.H344L 0.33 deleterious(0) probably_damaging(0.993) TCGA-CV-A6K1-01 19 30199207 30199207 C A C19orf12 Missense_Mutation p.M49I 0.30 tolerated(0.1) benign(0) TCGA-CV-A6K1-01 19 307340 307340 G A MIER2 Silent p.D465D 0.39 TCGA-CV-A6K1-01 19 35804289 35804289 C T MAG Missense_Mutation p.R605W 0.22 deleterious(0.03) benign(0.133) TCGA-CV-A6K1-01 19 36036571 36036571 G A TMEM147 5'UTR 0.42 TCGA-CV-A6K1-01 19 36515441 36515441 G A CLIP3 Missense_Mutation p.R259W 0.31 deleterious(0.02) benign(0.446) TCGA-CV-A6K1-01 19 39214921 39214921 C T ACTN4 Missense_Mutation p.S606L 0.32 tolerated(0.21) benign(0.002) TCGA-CV-A6K1-01 19 39962359 39962359 G - SUPT5H Frame_Shift_Del p.G648Afs*7 0.33 TCGA-CV-A6K1-01 19 41312517 41312517 C A EGLN2 Missense_Mutation p.P301T 0.31 deleterious(0.02) probably_damaging(1) TCGA-CV-A6K1-01 19 42813763 42813763 G T PRR19 Missense_Mutation p.Q9H 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.667) TCGA-CV-A6K1-01 19 42848890 42848890 G T MEGF8 Missense_Mutation p.V668F 0.24 tolerated(0.16) possibly_damaging(0.778) TCGA-CV-A6K1-01 19 43258544 43258544 G A PSG8 Missense_Mutation p.S395F 0.29 tolerated(0.24) benign(0.377) TCGA-CV-A6K1-01 19 4423354 4423354 A - CHAF1A Frame_Shift_Del p.K425Rfs*7 0.28 TCGA-CV-A6K1-01 19 44417630 44417630 G C ZNF45 Nonsense_Mutation p.S653* 0.33 TCGA-CV-A6K1-01 19 45024569 45024569 G T CEACAM20 RNA 0.46 TCGA-CV-A6K1-01 19 45281403 45281403 G T CBLC Missense_Mutation p.G72V 0.22 tolerated(0.24) benign(0.05) TCGA-CV-A6K1-01 19 45391455 45391455 C T PVRL2 Missense_Mutation p.P479L 0.35 tolerated_low_confidence(1) benign(0) TCGA-CV-A6K1-01 19 45537531 45537531 C T RELB Missense_Mutation p.R413W 0.40 deleterious(0) probably_damaging(0.925) TCGA-CV-A6K1-01 19 46271377 46271377 G A SIX5 Silent p.L242L 0.36 TCGA-CV-A6K1-01 19 46393941 46393942 - G MYPOP Frame_Shift_Ins p.H381Tfs*69 0.30 TCGA-CV-A6K1-01 19 47653537 47653537 G C SAE1 Missense_Mutation p.E97Q 0.33 tolerated(0.29) benign(0.088) TCGA-CV-A6K1-01 19 48197890 48197891 - C GLTSCR1 Frame_Shift_Ins p.P938Tfs*127 0.53 TCGA-CV-A6K1-01 19 49344495 49344495 G A PLEKHA4 Missense_Mutation p.R606W 0.16 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-CV-A6K1-01 19 49850444 49850444 C T TEAD2 Intron 0.28 TCGA-CV-A6K1-01 19 50029365 50029365 G A FCGRT Missense_Mutation p.A363T 0.29 deleterious_low_confidence(0.02) benign(0.1) TCGA-CV-A6K1-01 19 50364513 50364513 C T PNKP Missense_Mutation p.E520K 0.32 deleterious_low_confidence(0.01) benign(0.12) TCGA-CV-A6K1-01 19 51165434 51165434 C T SHANK1 Missense_Mutation p.A2092T 0.26 unknown(0) TCGA-CV-A6K1-01 19 51301707 51301707 C T C19orf48 5'UTR 0.27 TCGA-CV-A6K1-01 19 51629383 51629383 C G SIGLEC9 Missense_Mutation p.T249R 0.15 deleterious(0.03) probably_damaging(0.948) TCGA-CV-A6K1-01 19 53077370 53077370 G T ZNF701 Silent p.R56R 0.26 TCGA-CV-A6K1-01 19 53854694 53854694 C T ZNF845 Nonsense_Mutation p.R256* 0.23 TCGA-CV-A6K1-01 19 54611507 54611507 C T TFPT Silent p.A156A 0.25 TCGA-CV-A6K1-01 19 55994845 55994845 G A ZNF628 Missense_Mutation p.R762Q 0.36 tolerated(0.22) unknown(0) TCGA-CV-A6K1-01 19 57985623 57985623 C A ZNF772 Missense_Mutation p.Q163H 0.27 deleterious(0.04) probably_damaging(0.946) TCGA-CV-A6K1-01 19 59073882 59073882 G A MZF1 Missense_Mutation p.L588F 0.31 tolerated(0.35) probably_damaging(0.998) TCGA-CV-A6K1-01 19 7619527 7619527 C T PNPLA6 Missense_Mutation p.T861M 0.27 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K1-01 1 101339656 101339656 C A EXTL2 Missense_Mutation p.G279C 0.27 deleterious(0.03) probably_damaging(1) TCGA-CV-A6K1-01 1 10328246 10328246 C T KIF1B Silent p.S215S 0.39 TCGA-CV-A6K1-01 1 109235395 109235396 TG - PRPF38B Frame_Shift_Del p.M61Nfs*31 0.21 TCGA-CV-A6K1-01 1 110033787 110033787 A G ATXN7L2 Silent p.S534S 0.34 TCGA-CV-A6K1-01 1 110596374 110596374 G A STRIP1 Missense_Mutation p.R785Q 0.23 tolerated(0.31) benign(0.027) TCGA-CV-A6K1-01 1 1118413 1118413 G A TTLL10 Silent p.A358A 0.28 TCGA-CV-A6K1-01 1 114437899 114437899 C T AP4B1 Missense_Mutation p.A670T 0.41 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 1 11562134 11562134 C T PTCHD2 Missense_Mutation p.A362V 0.23 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K1-01 1 117618156 117618156 C T TTF2 Missense_Mutation p.P317L 0.31 tolerated(0.21) benign(0.001) TCGA-CV-A6K1-01 1 11810281 11810281 G T AGTRAP 3'UTR 0.30 TCGA-CV-A6K1-01 1 12251047 12251047 C T TNFRSF1B Missense_Mutation p.S71L 0.15 tolerated(0.08) benign(0.361) TCGA-CV-A6K1-01 1 12343295 12343295 A G VPS13D Silent p.S1712S 0.27 TCGA-CV-A6K1-01 1 14108321 14108321 A C PRDM2 Missense_Mutation p.N1344T 0.28 unknown(0) TCGA-CV-A6K1-01 1 146696488 146696488 T C FMO5 Missense_Mutation p.Q45R 0.28 tolerated(0.11) benign(0.022) TCGA-CV-A6K1-01 1 149858798 149858798 G A HIST2H2AC Missense_Mutation p.E92K 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CV-A6K1-01 1 149901586 149901586 G A MTMR11 Silent p.L624L 0.35 TCGA-CV-A6K1-01 1 150241169 150241169 G A APH1A Silent p.F14F 0.23 TCGA-CV-A6K1-01 1 150443199 150443199 A G RPRD2 Missense_Mutation p.Y592C 0.29 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CV-A6K1-01 1 152326153 152326153 T A FLG2 Missense_Mutation p.H1370L 0.05 benign(0.168) TCGA-CV-A6K1-01 1 153912155 153912155 G C DENND4B Missense_Mutation p.L577V 0.30 tolerated(0.13) probably_damaging(0.996) TCGA-CV-A6K1-01 1 154197682 154197682 G A UBAP2L Missense_Mutation p.R28Q 0.31 tolerated(0.36) unknown(0) TCGA-CV-A6K1-01 1 155385595 155385595 C T ASH1L Missense_Mutation p.R1983H 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-A6K1-01 1 155783569 155783569 G A GON4L Silent p.I436I 0.31 TCGA-CV-A6K1-01 1 155796641 155796641 G A GON4L Silent p.L228L 0.29 TCGA-CV-A6K1-01 1 156708372 156708372 C T MRPL24 Missense_Mutation p.R42H 0.30 deleterious(0.04) benign(0.011) TCGA-CV-A6K1-01 1 156777036 156777036 G A SH2D2A Silent p.H378H 0.30 TCGA-CV-A6K1-01 1 160160588 160160588 G A CASQ1 Missense_Mutation p.R16Q 0.11 tolerated(0.19) benign(0.001) TCGA-CV-A6K1-01 1 161173235 161173235 G A NDUFS2 Missense_Mutation p.R35Q 0.36 tolerated_low_confidence(0.26) benign(0.007) TCGA-CV-A6K1-01 1 167096818 167096818 G - DUSP27 Frame_Shift_Del p.T819Pfs*15 0.18 TCGA-CV-A6K1-01 1 169581488 169581488 C T SELP Missense_Mutation p.G310R 0.34 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 1 170965697 170965697 C A MROH9 Missense_Mutation p.Q463K 0.37 tolerated(0.45) benign(0.051) TCGA-CV-A6K1-01 1 171254589 171254589 G A FMO1 Missense_Mutation p.R502Q 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-CV-A6K1-01 1 171621570 171621570 C A MYOC Missense_Mutation p.C61F 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K1-01 1 178820250 178820250 G A ANGPTL1 3'UTR 0.25 TCGA-CV-A6K1-01 1 17964479 17964479 C T ARHGEF10L Missense_Mutation p.T675M 0.21 deleterious(0) probably_damaging(0.981) TCGA-CV-A6K1-01 1 181764067 181764067 C T CACNA1E Missense_Mutation p.S2032L 0.26 tolerated(0.69) possibly_damaging(0.706) TCGA-CV-A6K1-01 1 183221723 183221724 AG - NMNAT2 3'UTR 0.30 TCGA-CV-A6K1-01 1 183518987 183518987 C - SMG7 Frame_Shift_Del p.Q977Rfs*127 0.24 TCGA-CV-A6K1-01 1 184787912 184787912 G T FAM129A Missense_Mutation p.P345T 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 1 1957085 1957085 C T GABRD Silent p.I126I 0.28 TCGA-CV-A6K1-01 1 197065192 197065192 G T ASPM Missense_Mutation p.L2975I 0.25 tolerated(0.17) possibly_damaging(0.678) TCGA-CV-A6K1-01 1 203708958 203708958 A G ATP2B4 Silent p.L1198L 0.24 TCGA-CV-A6K1-01 1 208391083 208391083 A G PLXNA2 Missense_Mutation p.V62A 0.30 deleterious(0) probably_damaging(0.982) TCGA-CV-A6K1-01 1 212798649 212798649 G A FAM71A Missense_Mutation p.A144T 0.26 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K1-01 1 215793922 215793922 A - KCTD3 Frame_Shift_Del p.S806Vfs*16 0.30 TCGA-CV-A6K1-01 1 21904050 21904050 G T ALPL Missense_Mutation p.G495V 0.40 tolerated(0.1) benign(0.066) TCGA-CV-A6K1-01 1 224804897 224804897 G A CNIH3 Silent p.A7A 0.30 TCGA-CV-A6K1-01 1 22915470 22915471 - A EPHA8 Frame_Shift_Ins p.N363Kfs*112 0.28 TCGA-CV-A6K1-01 1 233313604 233313604 G C PCNXL2 Missense_Mutation p.Q1073E 0.40 tolerated(0.46) benign(0.001) TCGA-CV-A6K1-01 1 236906324 236906324 G A ACTN2 Silent p.T412T 0.26 TCGA-CV-A6K1-01 1 244217659 244217659 C T ZBTB18 Nonsense_Mutation p.R195* 0.19 TCGA-CV-A6K1-01 1 244218342 244218342 G A ZBTB18 Silent p.S422S 0.30 TCGA-CV-A6K1-01 1 245848957 245848957 C A KIF26B Missense_Mutation p.P891H 0.20 deleterious(0) unknown(0) TCGA-CV-A6K1-01 1 246929383 246929383 A G SCCPDH Missense_Mutation p.I376V 0.31 tolerated(0.47) benign(0.074) TCGA-CV-A6K1-01 1 247920946 247920946 C A OR1C1 Missense_Mutation p.A255S 0.30 tolerated(0.08) possibly_damaging(0.829) TCGA-CV-A6K1-01 1 25824781 25824781 A G TMEM57 Missense_Mutation p.I607V 0.26 tolerated(0.1) benign(0.113) TCGA-CV-A6K1-01 1 27876869 27876869 T - AHDC1 Frame_Shift_Del p.K586Nfs*37 0.23 TCGA-CV-A6K1-01 1 31191679 31191679 C T MATN1 Silent p.R189R 0.36 TCGA-CV-A6K1-01 1 32137238 32137238 G A COL16A1 Missense_Mutation p.S1043F 0.35 unknown(0) TCGA-CV-A6K1-01 1 32206079 32206079 G A BAI2 Missense_Mutation p.R620C 0.15 deleterious(0) probably_damaging(0.995) TCGA-CV-A6K1-01 1 3328134 3328134 C A PRDM16 Missense_Mutation p.A458D 0.22 deleterious(0.04) benign(0.097) TCGA-CV-A6K1-01 1 35370191 35370191 T C DLGAP3 Missense_Mutation p.D265G 0.36 deleterious(0) probably_damaging(0.977) TCGA-CV-A6K1-01 1 3751648 3751648 C A CEP104 Missense_Mutation p.E442D 0.24 deleterious(0.01) benign(0.022) TCGA-CV-A6K1-01 1 38188813 38188813 G A EPHA10 Silent p.F620F 0.28 TCGA-CV-A6K1-01 1 38353958 38353958 A C INPP5B Missense_Mutation p.W286G 0.07 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K1-01 1 42048868 42048868 G - HIVEP3 Frame_Shift_Del p.P534Lfs*5 0.29 TCGA-CV-A6K1-01 1 43897177 43897177 G C SZT2 Missense_Mutation p.E1634Q 0.29 tolerated(0.11) possibly_damaging(0.86) TCGA-CV-A6K1-01 1 44422003 44422003 C A IPO13 Missense_Mutation p.T278K 0.33 deleterious(0.01) possibly_damaging(0.564) TCGA-CV-A6K1-01 1 46500302 46500302 G T MAST2 Missense_Mutation p.G1321C 0.29 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CV-A6K1-01 1 53459323 53459323 G T SCP2 Intron 0.29 TCGA-CV-A6K1-01 1 53580430 53580430 C T SLC1A7 Missense_Mutation p.R144Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K1-01 1 57480776 57480776 C T DAB1 Silent p.Q408Q 0.36 TCGA-CV-A6K1-01 1 70641656 70641656 C T LRRC40 Missense_Mutation p.V272I 0.35 tolerated(0.27) benign(0.02) TCGA-CV-A6K1-01 1 85462634 85462634 C T MCOLN2 5'Flank 0.26 TCGA-CV-A6K1-01 1 874667 874667 T C SAMD11 Missense_Mutation p.L178P 0.35 deleterious(0.02) possibly_damaging(0.885) TCGA-CV-A6K1-01 1 93645724 93645724 C T TMED5 Missense_Mutation p.A26T 0.29 tolerated(0.07) probably_damaging(0.956) TCGA-CV-A6K1-01 1 94650429 94650429 T C ARHGAP29 Missense_Mutation p.Q703R 0.24 deleterious(0.01) probably_damaging(0.978) TCGA-CV-A6K1-01 1 9775659 9775659 T C PIK3CD Missense_Mutation p.Y68H 0.30 tolerated(0.09) probably_damaging(1) TCGA-CV-A6K1-01 20 13098248 13098248 C T SPTLC3 Missense_Mutation p.A343V 0.35 deleterious(0.03) possibly_damaging(0.482) TCGA-CV-A6K1-01 20 17970729 17970729 C A MGME1 Missense_Mutation p.Q338K 0.50 tolerated_low_confidence(0.11) benign(0.334) TCGA-CV-A6K1-01 20 23345441 23345441 C T GZF1 Nonsense_Mutation p.Q141* 0.05 TCGA-CV-A6K1-01 20 30602845 30602845 C A CCM2L Missense_Mutation p.L57M 0.35 deleterious(0) probably_damaging(0.966) TCGA-CV-A6K1-01 20 31661425 31661425 C T BPIFB3 3'UTR 0.26 TCGA-CV-A6K1-01 20 32207330 32207330 C T CBFA2T2 Missense_Mutation p.T152I 0.28 deleterious(0.01) probably_damaging(0.914) TCGA-CV-A6K1-01 20 32212724 32212724 C T CBFA2T2 Nonsense_Mutation p.Q292* 0.38 TCGA-CV-A6K1-01 20 33568398 33568398 C G MYH7B Missense_Mutation p.F162L 0.33 benign(0.428) TCGA-CV-A6K1-01 20 34611649 34611649 C T CNBD2 Silent p.D461D 0.31 TCGA-CV-A6K1-01 20 35176500 35176500 A G MYL9 Missense_Mutation p.T84A 0.36 deleterious(0) benign(0.002) TCGA-CV-A6K1-01 20 3767150 3767150 C G CENPB 5'UTR 0.44 TCGA-CV-A6K1-01 20 44472344 44472344 C G ACOT8 Missense_Mutation p.K221N 0.33 tolerated(0.08) possibly_damaging(0.612) TCGA-CV-A6K1-01 20 60511926 60511926 C A CDH4 Missense_Mutation p.D892E 0.24 tolerated(0.05) possibly_damaging(0.802) TCGA-CV-A6K1-01 20 60909061 60909061 G T LAMA5 Missense_Mutation p.P925H 0.32 probably_damaging(0.99) TCGA-CV-A6K1-01 20 62297385 62297385 C A RTEL1 Missense_Mutation p.S213R 0.22 tolerated(0.23) benign(0.242) TCGA-CV-A6K1-01 20 62331771 62331771 G A ARFRP1 3'UTR 0.25 TCGA-CV-A6K1-01 21 19666658 19666658 G A TMPRSS15 Silent p.G805G 0.33 TCGA-CV-A6K1-01 21 31971008 31971008 A G KRTAP6-2 Silent p.Y62Y 0.33 TCGA-CV-A6K1-01 21 33984563 33984563 G A C21orf59 5'UTR 0.44 TCGA-CV-A6K1-01 21 40649223 40649223 A - BRWD1 Frame_Shift_Del p.L353Wfs*19 0.16 TCGA-CV-A6K1-01 21 42767544 42767544 G T MX2 Missense_Mutation p.R301M 0.27 deleterious(0) benign(0.166) TCGA-CV-A6K1-01 21 46057597 46057597 C - KRTAP10-10 Frame_Shift_Del p.C90Afs*177 0.35 TCGA-CV-A6K1-01 21 46086604 46086604 G T KRTAP12-2 Missense_Mutation p.P67H 0.25 deleterious(0) probably_damaging(0.971) TCGA-CV-A6K1-01 21 9907290 9907290 C T TEKT4P2 RNA 0.21 TCGA-CV-A6K1-01 22 19036128 19036128 G A DGCR2 Silent p.N277N 0.32 TCGA-CV-A6K1-01 22 25301151 25301151 G T SGSM1 Missense_Mutation p.D994Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K1-01 22 29442737 29442737 G C ZNRF3 Missense_Mutation p.E260Q 0.33 tolerated(0.08) benign(0.178) TCGA-CV-A6K1-01 22 29656597 29656597 G A RHBDD3 Missense_Mutation p.P234L 0.41 tolerated(0.29) benign(0.004) TCGA-CV-A6K1-01 22 30857392 30857392 C T SEC14L3 Missense_Mutation p.R329Q 0.32 deleterious(0.02) benign(0.003) TCGA-CV-A6K1-01 22 31673039 31673039 C T LIMK2 Silent p.D658D 0.28 TCGA-CV-A6K1-01 22 37211254 37211254 C G PVALB Missense_Mutation p.K29N 0.18 tolerated(0.07) possibly_damaging(0.879) TCGA-CV-A6K1-01 22 41368524 41368524 T C RBX1 3'UTR 0.29 TCGA-CV-A6K1-01 22 46749737 46749737 G T TRMU Missense_Mutation p.K282N 0.28 deleterious(0) probably_damaging(0.956) TCGA-CV-A6K1-01 22 46760000 46760000 G A CELSR1 Silent p.C2976C 0.24 TCGA-CV-A6K1-01 22 50688967 50688967 G A HDAC10 Intron 0.30 TCGA-CV-A6K1-01 22 51011396 51011396 G T CPT1B Silent p.A420A 0.30 TCGA-CV-A6K1-01 2 100916256 100916256 G A LONRF2 Missense_Mutation p.A397V 0.28 tolerated(0.29) benign(0.024) TCGA-CV-A6K1-01 2 101874386 101874386 G T CNOT11 Silent p.V216V 0.35 TCGA-CV-A6K1-01 2 10188573 10188573 C T KLF11 Missense_Mutation p.A370V 0.28 deleterious(0) possibly_damaging(0.776) TCGA-CV-A6K1-01 2 103061768 103061768 C T IL18RAP Missense_Mutation p.T347I 0.22 deleterious(0) probably_damaging(0.987) TCGA-CV-A6K1-01 2 10952826 10952826 G A PDIA6 5'UTR 0.11 TCGA-CV-A6K1-01 2 113146071 113146071 C T RGPD8 Missense_Mutation p.R1484K 0.28 tolerated(0.3) benign(0.038) TCGA-CV-A6K1-01 2 11332360 11332360 G A ROCK2 Silent p.A1359A 0.25 TCGA-CV-A6K1-01 2 130877830 130877830 C T POTEF Missense_Mutation p.D87N 0.02 deleterious_low_confidence(0.04) benign(0.358) TCGA-CV-A6K1-01 2 141116402 141116402 C A LRP1B Missense_Mutation p.D3749Y 0.29 possibly_damaging(0.861) TCGA-CV-A6K1-01 2 166003408 166003408 C T SCN3A Silent p.K504K 0.25 TCGA-CV-A6K1-01 2 166908346 166908346 T G SCN1A Missense_Mutation p.T283P 0.27 tolerated(0.31) benign(0.049) TCGA-CV-A6K1-01 2 167760330 167760330 C G XIRP2 Missense_Mutation p.A113G 0.29 probably_damaging(0.962) TCGA-CV-A6K1-01 2 179413860 179413860 T G TTN Silent p.T30831T 0.27 TCGA-CV-A6K1-01 2 179441117 179441117 G A TTN Missense_Mutation p.H23248Y 0.42 TCGA-CV-A6K1-01 2 179582534 179582534 C A TTN Missense_Mutation p.R8356L 0.14 TCGA-CV-A6K1-01 2 179586717 179586717 C A TTN Missense_Mutation p.G7558V 0.31 TCGA-CV-A6K1-01 2 185798422 185798422 C A ZNF804A Silent p.R116R 0.29 TCGA-CV-A6K1-01 2 190927173 190927173 A C MSTN Silent p.S50S 0.12 TCGA-CV-A6K1-01 2 191894585 191894585 G T STAT4 Missense_Mutation p.S743Y 0.06 deleterious_low_confidence(0) benign(0.008) TCGA-CV-A6K1-01 2 201477409 201477410 - T AOX1 Frame_Shift_Ins p.G450Wfs*8 0.28 TCGA-CV-A6K1-01 2 210968862 210968862 C A KANSL1L Missense_Mutation p.S465I 0.27 deleterious(0) possibly_damaging(0.882) TCGA-CV-A6K1-01 2 219540175 219540175 G A STK36 Missense_Mutation p.G138D 0.25 tolerated(0.06) benign(0.071) TCGA-CV-A6K1-01 2 219875636 219875636 T - CCDC108 Frame_Shift_Del p.N1347Ifs*63 0.29 TCGA-CV-A6K1-01 2 220103853 220103853 G - GLB1L Frame_Shift_Del p.T342Hfs*29 0.27 TCGA-CV-A6K1-01 2 223793637 223793638 - A ACSL3 Frame_Shift_Ins p.N510Kfs*9 0.21 TCGA-CV-A6K1-01 2 231372795 231372796 - T SP100 Intron 0.21 TCGA-CV-A6K1-01 2 239079047 239079047 A - ILKAP 3'UTR 0.41 TCGA-CV-A6K1-01 2 239141088 239141088 C T AC016757.3 5'Flank 0.40 TCGA-CV-A6K1-01 2 239975189 239975189 G A HDAC4 Missense_Mutation p.S1061L 0.30 tolerated(0.11) possibly_damaging(0.681) TCGA-CV-A6K1-01 2 240009285 240009285 G - HDAC4 Frame_Shift_Del p.P800Lfs*30 0.20 TCGA-CV-A6K1-01 2 240982232 240982232 G T PRR21 Silent p.T56T 0.30 TCGA-CV-A6K1-01 2 242011234 242011234 G C SNED1 Missense_Mutation p.R1253T 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K1-01 2 242793362 242793363 - G PDCD1 Frame_Shift_Ins p.V239Rfs*6 0.20 TCGA-CV-A6K1-01 2 26750726 26750726 G A OTOF Silent p.F67F 0.30 TCGA-CV-A6K1-01 2 27302057 27302057 G - EMILIN1 Frame_Shift_Del p.Q45Rfs*20 0.30 TCGA-CV-A6K1-01 2 27534804 27534804 G A MPV17 Nonsense_Mutation p.Q142* 0.21 TCGA-CV-A6K1-01 2 27900722 27900722 G A SLC4A1AP Missense_Mutation p.R565K 0.25 tolerated(0.32) benign(0.109) TCGA-CV-A6K1-01 2 32449824 32449824 A - NLRC4 Frame_Shift_Del p.F931Lfs*6 0.26 TCGA-CV-A6K1-01 2 32689676 32689676 G A BIRC6 Missense_Mutation p.V1681M 0.33 benign(0.188) TCGA-CV-A6K1-01 2 37255248 37255248 T C HEATR5B Missense_Mutation p.D1224G 0.13 deleterious(0.04) probably_damaging(0.991) TCGA-CV-A6K1-01 2 44121770 44121770 T C LRPPRC Splice_Site p.X1301_splice 0.28 TCGA-CV-A6K1-01 2 44457886 44457886 C T PPM1B 3'UTR 0.19 TCGA-CV-A6K1-01 2 61566564 61566564 G T USP34 Nonsense_Mutation p.S889* 0.41 TCGA-CV-A6K1-01 2 70047928 70047928 G A ANXA4 Missense_Mutation p.G294E 0.30 tolerated(0.16) probably_damaging(1) TCGA-CV-A6K1-01 2 79254236 79254236 T A REG3G Missense_Mutation p.L91Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-CV-A6K1-01 2 79350279 79350279 C A REG1A Missense_Mutation p.Q147K 0.36 tolerated(1) benign(0) TCGA-CV-A6K1-01 2 79364379 79364379 C G REG1P RNA 0.44 TCGA-CV-A6K1-01 2 98736107 98736107 C T VWA3B Silent p.C141C 0.30 TCGA-CV-A6K1-01 3 110852821 110852822 - A PVRL3 Frame_Shift_Ins p.E473Rfs*12 0.44 TCGA-CV-A6K1-01 3 115805312 115805312 G A LSAMP Missense_Mutation p.R83W 0.27 deleterious(0) probably_damaging(0.995) TCGA-CV-A6K1-01 3 122003855 122003855 C T CASR Silent p.C1028C 0.37 TCGA-CV-A6K1-01 3 125872376 125872376 C T ALDH1L1 Missense_Mutation p.E267K 0.30 tolerated_low_confidence(0.47) benign(0.003) TCGA-CV-A6K1-01 3 130095261 130095261 T C COL6A5 Silent p.H83H 0.35 TCGA-CV-A6K1-01 3 13364886 13364886 G T NUP210 Missense_Mutation p.P1564H 0.45 tolerated(0.12) possibly_damaging(0.519) TCGA-CV-A6K1-01 3 133657316 133657316 C A SLCO2A1 Missense_Mutation p.K549N 0.35 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 3 148895683 148895683 C A CP Missense_Mutation p.G988C 0.32 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 3 179525601 179525601 G A PEX5L Missense_Mutation p.R513C 0.28 deleterious(0) probably_damaging(0.993) TCGA-CV-A6K1-01 3 182946039 182946039 T G MCF2L2 Intron 0.33 TCGA-CV-A6K1-01 3 183015020 183015020 C T MCF2L2 Intron 0.30 TCGA-CV-A6K1-01 3 187447317 187447317 G - BCL6 Frame_Shift_Del p.Y293Tfs*31 0.25 TCGA-CV-A6K1-01 3 194140669 194140669 A - ATP13A3 Frame_Shift_Del p.L1114Yfs*22 0.23 TCGA-CV-A6K1-01 3 196817840 196817840 C A DLG1 Missense_Mutation p.S568I 0.30 deleterious(0) probably_damaging(0.937) TCGA-CV-A6K1-01 3 25832847 25832847 C T OXSM Silent p.I112I 0.54 TCGA-CV-A6K1-01 3 38622626 38622626 G - SCN5A Frame_Shift_Del p.Y1009Tfs*136 0.41 TCGA-CV-A6K1-01 3 39227313 39227313 C T XIRP1 Silent p.G1208G 0.58 TCGA-CV-A6K1-01 3 42916638 42916638 C A CYP8B1 Missense_Mutation p.R224L 0.49 tolerated(0.22) benign(0.012) TCGA-CV-A6K1-01 3 72890301 72890301 C A SHQ1 Missense_Mutation p.W127C 0.44 deleterious(0) probably_damaging(0.94) TCGA-CV-A6K1-01 3 7728108 7728108 A C GRM7 Intron 0.27 TCGA-CV-A6K1-01 4 10022970 10022970 C T SLC2A9 Silent p.G28G 0.23 TCGA-CV-A6K1-01 4 110402927 110402927 T G SEC24B Missense_Mutation p.D385E 0.19 tolerated_low_confidence(0.13) benign(0.016) TCGA-CV-A6K1-01 4 110791242 110791242 A G LRIT3 Missense_Mutation p.Q446R 0.33 tolerated(0.54) benign(0) TCGA-CV-A6K1-01 4 146041093 146041093 T - ABCE1 Frame_Shift_Del p.L313Wfs*10 0.26 TCGA-CV-A6K1-01 4 146058514 146058514 T - OTUD4 3'UTR 0.15 TCGA-CV-A6K1-01 4 153245424 153245424 G A FBXW7 Silent p.L589L 0.27 TCGA-CV-A6K1-01 4 157694008 157694008 G - PDGFC Frame_Shift_Del p.P178Lfs*13 0.28 TCGA-CV-A6K1-01 4 170042112 170042112 G C SH3RF1 Missense_Mutation p.R459G 0.27 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 4 184595926 184595926 G A TRAPPC11 Silent p.V207V 0.33 TCGA-CV-A6K1-01 4 185320135 185320135 C T IRF2 Missense_Mutation p.D210N 0.34 deleterious(0) possibly_damaging(0.51) TCGA-CV-A6K1-01 4 187549880 187549880 G C FAT1 Missense_Mutation p.P1454R 0.23 probably_damaging(1) TCGA-CV-A6K1-01 4 187629214 187629214 T A FAT1 Missense_Mutation p.T590S 0.26 possibly_damaging(0.9) TCGA-CV-A6K1-01 4 39929663 39929663 C T PDS5A Missense_Mutation p.R87H 0.23 deleterious(0) probably_damaging(0.993) TCGA-CV-A6K1-01 4 40778128 40778128 C G NSUN7 Silent p.V296V 0.27 TCGA-CV-A6K1-01 4 44450422 44450422 G A KCTD8 Missense_Mutation p.S40L 0.33 tolerated(0.19) benign(0.019) TCGA-CV-A6K1-01 4 46060624 46060624 T - GABRG1 Frame_Shift_Del p.N214Mfs*12 0.43 TCGA-CV-A6K1-01 4 59391 59391 C T ZNF595 Silent p.A24A 0.05 TCGA-CV-A6K1-01 4 69179981 69179981 G A YTHDC1 Missense_Mutation p.R674W 0.38 deleterious_low_confidence(0) unknown(0) TCGA-CV-A6K1-01 4 73013438 73013438 A - NPFFR2 Frame_Shift_Del p.T494Pfs*15 0.24 TCGA-CV-A6K1-01 4 75938152 75938152 T C PARM1 Silent p.T187T 0.38 TCGA-CV-A6K1-01 4 77057545 77057545 G A NUP54 Nonsense_Mutation p.Q106* 0.24 TCGA-CV-A6K1-01 4 85645602 85645602 T C WDFY3 Missense_Mutation p.E2473G 0.30 deleterious(0.03) possibly_damaging(0.53) TCGA-CV-A6K1-01 4 85664916 85664916 C T WDFY3 Missense_Mutation p.E2004K 0.27 tolerated(0.21) benign(0.052) TCGA-CV-A6K1-01 4 906584 906584 T A GAK Splice_Site p.X70_splice 0.39 TCGA-CV-A6K1-01 4 96171725 96171725 G - UNC5C Frame_Shift_Del p.R230Dfs*27 0.20 TCGA-CV-A6K1-01 5 112151205 112151205 G A APC Missense_Mutation p.R283Q 0.29 benign(0.015) TCGA-CV-A6K1-01 5 115146921 115146921 A T CDO1 Missense_Mutation p.S114T 0.27 tolerated(0.55) benign(0.003) TCGA-CV-A6K1-01 5 123982862 123982862 G T ZNF608 Missense_Mutation p.P1072H 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-CV-A6K1-01 5 129019947 129019947 C T ADAMTS19 Silent p.C927C 0.36 TCGA-CV-A6K1-01 5 137228188 137228188 C T PKD2L2 Silent p.N51N 0.24 TCGA-CV-A6K1-01 5 138760756 138760756 G T DNAJC18 Missense_Mutation p.R203S 0.33 tolerated(0.14) benign(0.09) TCGA-CV-A6K1-01 5 139060660 139060660 C T CXXC5 Silent p.S184S 0.34 TCGA-CV-A6K1-01 5 140181353 140181353 T C PCDHA3 Missense_Mutation p.S191P 0.24 tolerated_low_confidence(0.33) benign(0.026) TCGA-CV-A6K1-01 5 140202219 140202219 G - PCDHA5 Frame_Shift_Del p.D287Mfs*2 0.11 TCGA-CV-A6K1-01 5 140229490 140229490 G A PCDHA9 Silent p.P470P 0.33 TCGA-CV-A6K1-01 5 140308546 140308546 G T PCDHAC1 Missense_Mutation p.C690F 0.25 deleterious(0) benign(0.048) TCGA-CV-A6K1-01 5 140482180 140482180 G C PCDHB3 Missense_Mutation p.E649D 0.29 tolerated_low_confidence(0.24) benign(0.057) TCGA-CV-A6K1-01 5 140559652 140559652 A G PCDHB8 Silent p.P679P 0.15 TCGA-CV-A6K1-01 5 140563815 140563815 G A PCDHB16 Missense_Mutation p.V561M 0.60 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-CV-A6K1-01 5 140573806 140573806 G A PCDHB10 Missense_Mutation p.V561M 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-CV-A6K1-01 5 140590001 140590001 G A PCDHB12 Missense_Mutation p.A508T 0.30 deleterious_low_confidence(0.04) benign(0.114) TCGA-CV-A6K1-01 5 140594607 140594607 A - PCDHB13 Frame_Shift_Del p.K306Nfs*30 0.28 TCGA-CV-A6K1-01 5 140744051 140744051 C A PCDHGA5 Missense_Mutation p.L52I 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CV-A6K1-01 5 14601329 14601329 G T FAM105A Nonsense_Mutation p.G78* 0.24 TCGA-CV-A6K1-01 5 149589193 149589193 G A SLC6A7 3'UTR 0.40 TCGA-CV-A6K1-01 5 159398909 159398909 C - ADRA1B Frame_Shift_Del p.D327Tfs*88 0.31 TCGA-CV-A6K1-01 5 176829388 176829388 T C F12 Missense_Mutation p.S585G 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 5 176936826 176936826 C T DOK3 Missense_Mutation p.D10N 0.17 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-CV-A6K1-01 5 177031391 177031391 G A B4GALT7 Missense_Mutation p.A88T 0.31 tolerated(0.34) benign(0.008) TCGA-CV-A6K1-01 5 179192324 179192324 C T MAML1 Intron 0.35 TCGA-CV-A6K1-01 5 179192463 179192463 C T MAML1 Missense_Mutation p.S151F 0.26 deleterious(0.03) possibly_damaging(0.534) TCGA-CV-A6K1-01 5 33596151 33596151 T C ADAMTS12 Missense_Mutation p.T848A 0.27 tolerated(0.18) benign(0.021) TCGA-CV-A6K1-01 5 40852583 40852583 G A CARD6 Missense_Mutation p.M383I 0.30 deleterious(0.01) benign(0.091) TCGA-CV-A6K1-01 5 5232626 5232626 C T ADAMTS16 Missense_Mutation p.P616L 0.27 deleterious(0) probably_damaging(0.994) TCGA-CV-A6K1-01 5 78426800 78426800 G A BHMT Missense_Mutation p.R361Q 0.47 deleterious(0) probably_damaging(0.992) TCGA-CV-A6K1-01 5 86564680 86564680 C - RASA1 Frame_Shift_Del p.P139Lfs*35 0.33 TCGA-CV-A6K1-01 6 102483287 102483287 A C GRIK2 Missense_Mutation p.K719N 0.23 deleterious(0.04) benign(0.025) TCGA-CV-A6K1-01 6 106553159 106553159 C T PRDM1 Missense_Mutation p.A375V 0.29 tolerated(0.35) benign(0.004) TCGA-CV-A6K1-01 6 109771207 109771207 C T MICAL1 Missense_Mutation p.E425K 0.28 tolerated(0.57) benign(0.006) TCGA-CV-A6K1-01 6 109867141 109867141 C T AK9 Missense_Mutation p.A1052T 0.32 tolerated(0.5) benign(0.01) TCGA-CV-A6K1-01 6 114181119 114181119 C T MARCKS Silent p.A121A 0.57 TCGA-CV-A6K1-01 6 117681120 117681120 A - ROS1 Frame_Shift_Del p.L1167* 0.21 TCGA-CV-A6K1-01 6 119281277 119281277 G T FAM184A Missense_Mutation p.F1138L 0.34 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K1-01 6 149959596 149959596 G T KATNA1 Missense_Mutation p.Q30K 0.30 tolerated(0.07) benign(0.002) TCGA-CV-A6K1-01 6 151265717 151265717 G A MTHFD1L Silent p.T512T 0.25 TCGA-CV-A6K1-01 6 153019117 153019117 T - MYCT1 Frame_Shift_Del p.F29Sfs*28 0.27 TCGA-CV-A6K1-01 6 159653322 159653322 G A FNDC1 Missense_Mutation p.R593Q 0.24 tolerated_low_confidence(0.15) unknown(0) TCGA-CV-A6K1-01 6 160183187 160183187 C G ACAT2 Intron 0.26 TCGA-CV-A6K1-01 6 167570658 167570658 T C GPR31 Missense_Mutation p.Q221R 0.38 tolerated(0.84) benign(0.001) TCGA-CV-A6K1-01 6 24566860 24566860 G A KIAA0319 Silent p.L753L 0.27 TCGA-CV-A6K1-01 6 25801139 25801140 - A SLC17A1 Frame_Shift_Ins p.L416Ffs*7 0.21 TCGA-CV-A6K1-01 6 26056117 26056117 C T HIST1H1C Silent p.A180A 0.32 TCGA-CV-A6K1-01 6 26385404 26385404 A G BTN2A2 Missense_Mutation p.R86G 0.32 deleterious(0.02) probably_damaging(0.948) TCGA-CV-A6K1-01 6 29079969 29079969 T C OR2J3 Missense_Mutation p.M101T 0.31 deleterious(0.02) benign(0.012) TCGA-CV-A6K1-01 6 29797377 29797377 T C HLA-G Missense_Mutation p.W268R 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-CV-A6K1-01 6 29797592 29797592 G T HLA-G Splice_Site p.X299_splice 0.25 TCGA-CV-A6K1-01 6 31323943 31323943 C T HLA-B Splice_Site p.X207_splice 0.34 TCGA-CV-A6K1-01 6 32117130 32117130 C T PRRT1 Missense_Mutation p.A264T 0.29 deleterious(0.04) possibly_damaging(0.711) TCGA-CV-A6K1-01 6 32130626 32130627 - G PPT2 Frame_Shift_Ins p.A278Gfs*23 0.26 TCGA-CV-A6K1-01 6 32154621 32154621 C A PBX2 Missense_Mutation p.G361V 0.29 deleterious(0.04) benign(0.147) TCGA-CV-A6K1-01 6 35196408 35196408 C A SCUBE3 Silent p.R76R 0.39 TCGA-CV-A6K1-01 6 38889169 38889169 C A DNAH8 Silent p.R3300R 0.31 TCGA-CV-A6K1-01 6 39832810 39832810 G A DAAM2 Missense_Mutation p.V130M 0.35 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K1-01 6 4049263 4049263 G A PRPF4B Missense_Mutation p.R650Q 0.36 tolerated(0.14) unknown(0) TCGA-CV-A6K1-01 6 42559958 42559958 T C UBR2 Silent p.H136H 0.38 TCGA-CV-A6K1-01 6 43400649 43400649 G T ABCC10 Missense_Mutation p.G311C 0.28 deleterious(0) probably_damaging(0.938) TCGA-CV-A6K1-01 6 43492366 43492366 C A XPO5 Missense_Mutation p.R1107M 0.29 tolerated(0.09) possibly_damaging(0.653) TCGA-CV-A6K1-01 6 48035979 48035979 A G PTCHD4 Missense_Mutation p.V138A 0.31 tolerated(0.13) possibly_damaging(0.777) TCGA-CV-A6K1-01 6 6197471 6197471 G - F13A1 Frame_Shift_Del p.Q401Rfs*64 0.29 TCGA-CV-A6K1-01 6 71212388 71212388 C T FAM135A Missense_Mutation p.A308V 0.26 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K1-01 6 87969527 87969527 T C ZNF292 Silent p.I2060I 0.27 TCGA-CV-A6K1-01 6 96997424 96997424 T C UFL1 Silent p.L553L 0.26 TCGA-CV-A6K1-01 6 99283622 99283622 G - POU3F2 Frame_Shift_Del p.L293Wfs*24 0.26 TCGA-CV-A6K1-01 7 100205710 100205710 C T PCOLCE Missense_Mutation p.A445V 0.33 tolerated_low_confidence(0.19) benign(0.005) TCGA-CV-A6K1-01 7 100459110 100459110 C T SLC12A9 Silent p.G480G 0.32 TCGA-CV-A6K1-01 7 100880799 100880799 C - CLDN15 Frame_Shift_Del p.V22* 0.31 TCGA-CV-A6K1-01 7 103234330 103234330 C G RELN Splice_Site p.X1238_splice 0.33 TCGA-CV-A6K1-01 7 104752943 104752944 TG - KMT2E Frame_Shift_Del p.F1582Yfs*286 0.24 TCGA-CV-A6K1-01 7 11675891 11675891 G A THSD7A Silent p.A296A 0.35 TCGA-CV-A6K1-01 7 126883110 126883110 C T GRM8 Missense_Mutation p.G50D 0.37 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K1-01 7 135048772 135048772 G A CNOT4 Silent p.D558D 0.47 TCGA-CV-A6K1-01 7 139281659 139281659 G A HIPK2 Missense_Mutation p.R841C 0.42 tolerated(0.08) possibly_damaging(0.835) TCGA-CV-A6K1-01 7 147600793 147600793 C T CNTNAP2 Silent p.C745C 0.41 TCGA-CV-A6K1-01 7 148801741 148801741 G A ZNF425 Missense_Mutation p.H408Y 0.40 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.39 TCGA-CV-A6K1-01 7 154684243 154684243 G A DPP6 3'UTR 0.51 TCGA-CV-A6K1-01 7 20180627 20180627 A G MACC1 Missense_Mutation p.L834P 0.29 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K1-01 7 20198752 20198752 T - MACC1 Frame_Shift_Del p.N411Tfs*23 0.20 TCGA-CV-A6K1-01 7 36464327 36464327 G C ANLN Missense_Mutation p.K895N 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CV-A6K1-01 7 40174042 40174042 C G MPLKIP Missense_Mutation p.R42P 0.33 tolerated(0.24) unknown(0) TCGA-CV-A6K1-01 7 44798983 44798983 C A ZMIZ2 Missense_Mutation p.P306H 0.33 deleterious(0) possibly_damaging(0.836) TCGA-CV-A6K1-01 7 45688285 45688285 G A ADCY1 Missense_Mutation p.R346H 0.31 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 7 48081042 48081042 C A C7orf57 Missense_Mutation p.P56H 0.44 tolerated(0.1) possibly_damaging(0.893) TCGA-CV-A6K1-01 7 4824655 4824655 C T AP5Z1 Missense_Mutation p.R303C 0.34 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K1-01 7 48626818 48626818 T A ABCA13 Missense_Mutation p.S4858R 0.25 probably_damaging(1) TCGA-CV-A6K1-01 7 5330374 5330374 C T SLC29A4 Missense_Mutation p.P61S 0.39 tolerated(0.1) benign(0.115) TCGA-CV-A6K1-01 7 5353062 5353062 G A TNRC18 Missense_Mutation p.P2487L 0.29 benign(0.008) TCGA-CV-A6K1-01 7 56128584 56128584 C T CCT6A Missense_Mutation p.A433V 0.34 tolerated(0.15) benign(0.092) TCGA-CV-A6K1-01 7 6438326 6438327 - G RAC1 Frame_Shift_Ins p.K89Qfs*22 0.24 TCGA-CV-A6K1-01 7 73011953 73011953 G A MLXIPL Missense_Mutation p.P388S 0.42 tolerated(0.13) probably_damaging(0.996) TCGA-CV-A6K1-01 7 73151895 73151895 C A ABHD11 Missense_Mutation p.Q153H 0.20 deleterious(0.01) possibly_damaging(0.537) TCGA-CV-A6K1-01 7 75104355 75104355 C G POM121C 5'UTR 0.20 TCGA-CV-A6K1-01 7 80091852 80091852 G A GNAT3 Missense_Mutation p.A229V 0.31 tolerated(0.07) probably_damaging(1) TCGA-CV-A6K1-01 7 87369141 87369141 G A RUNDC3B Missense_Mutation p.E182K 0.34 deleterious(0) probably_damaging(0.992) TCGA-CV-A6K1-01 7 88962805 88962806 - A ZNF804B Frame_Shift_Ins p.N172Kfs*9 0.23 TCGA-CV-A6K1-01 7 94252690 94252690 C T SGCE Missense_Mutation p.R137H 0.29 tolerated(0.41) probably_damaging(0.966) TCGA-CV-A6K1-01 7 98609011 98609011 C T TRRAP Silent p.D3716D 0.26 TCGA-CV-A6K1-01 7 99490134 99490134 C G TRIM4 Missense_Mutation p.E385D 0.35 tolerated(0.23) probably_damaging(0.998) TCGA-CV-A6K1-01 7 99704297 99704297 C A AP4M1 Missense_Mutation p.P385H 0.23 tolerated(0.57) benign(0.006) TCGA-CV-A6K1-01 8 100479781 100479781 G A VPS13B Silent p.T1195T 0.30 TCGA-CV-A6K1-01 8 104427657 104427657 G A DCAF13 Missense_Mutation p.A147T 0.27 deleterious_low_confidence(0.04) benign(0.031) TCGA-CV-A6K1-01 8 10470808 10470808 G A RP1L1 Missense_Mutation p.P267L 0.33 benign(0.168) TCGA-CV-A6K1-01 8 109797107 109797107 C G TMEM74 Missense_Mutation p.S74T 0.30 tolerated(0.17) benign(0.006) TCGA-CV-A6K1-01 8 113301669 113301669 G A CSMD3 Missense_Mutation p.R3025C 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-CV-A6K1-01 8 124790324 124790324 T C FAM91A1 Missense_Mutation p.S143P 0.31 deleterious(0) probably_damaging(0.979) TCGA-CV-A6K1-01 8 125740259 125740259 G T MTSS1 5'UTR 0.28 TCGA-CV-A6K1-01 8 139606317 139606317 G T COL22A1 Missense_Mutation p.P1520T 0.40 unknown(0) TCGA-CV-A6K1-01 8 139610998 139610998 T G COL22A1 Silent p.P1443P 0.32 TCGA-CV-A6K1-01 8 139620195 139620195 C T COL22A1 Missense_Mutation p.G1339D 0.24 unknown(0) TCGA-CV-A6K1-01 8 139642946 139642946 C A COL22A1 Missense_Mutation p.G1219W 0.27 unknown(0) TCGA-CV-A6K1-01 8 141542697 141542697 C T AGO2 Silent p.S763S 0.32 TCGA-CV-A6K1-01 8 142151514 142151514 G - DENND3 Intron 0.31 TCGA-CV-A6K1-01 8 144991258 144991258 C T PLEC Missense_Mutation p.R4381H 0.30 probably_damaging(0.999) TCGA-CV-A6K1-01 8 144997785 144997785 C T PLEC Silent p.A2241A 0.52 TCGA-CV-A6K1-01 8 145151100 145151100 C A CYC1 Missense_Mutation p.H134N 0.24 tolerated(1) benign(0.017) TCGA-CV-A6K1-01 8 145739865 145739865 C A RECQL4 Silent p.S555S 0.24 TCGA-CV-A6K1-01 8 145745914 145745914 C T LRRC14 Missense_Mutation p.R208C 0.31 tolerated(0.06) benign(0.004) TCGA-CV-A6K1-01 8 17513519 17513522 TGTT - MTUS1 Frame_Shift_Del p.T987Cfs*53 0.37 TCGA-CV-A6K1-01 8 30941236 30941236 G A WRN Missense_Mutation p.E431K 0.16 tolerated(0.13) benign(0.017) TCGA-CV-A6K1-01 8 39068690 39068690 C T ADAM32 Silent p.S360S 0.34 TCGA-CV-A6K1-01 8 41519418 41519418 G A ANK1 Silent p.A1881A 0.37 TCGA-CV-A6K1-01 8 42693100 42693100 T - THAP1 3'UTR 0.22 TCGA-CV-A6K1-01 8 54142051 54142051 C T OPRK1 Missense_Mutation p.A317T 0.35 deleterious(0.02) probably_damaging(1) TCGA-CV-A6K1-01 8 59727981 59727981 G C TOX Missense_Mutation p.H436Q 0.36 tolerated(0.12) probably_damaging(0.917) TCGA-CV-A6K1-01 8 69445431 69445431 A - C8orf34 Intron 0.36 TCGA-CV-A6K1-01 8 72987646 72987646 G A TRPA1 5'UTR 0.25 TCGA-CV-A6K1-01 8 90782147 90782148 - AT RIPK2 Frame_Shift_Ins p.S214Ifs*26 0.17 TCGA-CV-A6K1-01 8 92998496 92998496 T A RUNX1T1 Missense_Mutation p.R390W 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-CV-A6K1-01 8 93074777 93074777 G A RUNX1T1 Intron 0.29 TCGA-CV-A6K1-01 8 98900392 98900392 G A MATN2 Missense_Mutation p.E22K 0.35 tolerated(0.69) benign(0.023) TCGA-CV-A6K1-01 9 104302630 104302630 T C RNF20 Missense_Mutation p.I92T 0.04 tolerated(0.19) benign(0) TCGA-CV-A6K1-01 9 107288624 107288624 G - OR13C4 Frame_Shift_Del p.M290Cfs*2 0.30 TCGA-CV-A6K1-01 9 115956325 115956325 G A FKBP15 Missense_Mutation p.S330L 0.31 deleterious(0.04) benign(0.211) TCGA-CV-A6K1-01 9 117692698 117692698 A G TNFSF8 5'Flank 0.44 TCGA-CV-A6K1-01 9 130982471 130982471 G T DNM1 Missense_Mutation p.V234L 0.29 deleterious(0) possibly_damaging(0.877) TCGA-CV-A6K1-01 9 132400246 132400246 G A ASB6 Silent p.F363F 0.29 TCGA-CV-A6K1-01 9 132630581 132630581 C A USP20 Missense_Mutation p.R330S 0.20 tolerated(0.27) possibly_damaging(0.564) TCGA-CV-A6K1-01 9 135553528 135553528 C T GTF3C4 Silent p.C174C 0.32 TCGA-CV-A6K1-01 9 135917545 135917545 C T GTF3C5 Silent p.C75C 0.29 TCGA-CV-A6K1-01 9 135985867 135985867 C G RALGDS Missense_Mutation p.E102Q 0.25 deleterious(0) probably_damaging(0.96) TCGA-CV-A6K1-01 9 139379139 139379139 G A C9orf163 Missense_Mutation p.R80H 0.35 tolerated_low_confidence(0.17) possibly_damaging(0.715) TCGA-CV-A6K1-01 9 139399552 139399552 G - NOTCH1 Frame_Shift_Del p.L1531Cfs*49 0.26 TCGA-CV-A6K1-01 9 139571981 139571981 G T AGPAT2 Missense_Mutation p.F70L 0.30 tolerated(1) benign(0.001) TCGA-CV-A6K1-01 9 140361907 140361907 G A PNPLA7 Silent p.G967G 0.31 TCGA-CV-A6K1-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.39 TCGA-CV-A6K1-01 9 18504910 18504910 C T ADAMTSL1 Silent p.C49C 0.27 TCGA-CV-A6K1-01 9 18777333 18777333 G A ADAMTSL1 Missense_Mutation p.G1036R 0.45 tolerated(0.78) benign(0.003) TCGA-CV-A6K1-01 9 18777505 18777505 G A ADAMTSL1 Missense_Mutation p.R1093H 0.44 tolerated(0.05) benign(0.433) TCGA-CV-A6K1-01 9 22447589 22447589 C G DMRTA1 Silent p.G175G 0.36 TCGA-CV-A6K1-01 9 33264312 33264312 C A BAG1 Nonsense_Mutation p.E121* 0.26 TCGA-CV-A6K1-01 9 35737883 35737883 G A GBA2 Silent p.N789N 0.27 TCGA-CV-A6K1-01 9 5055756 5055756 G A JAK2 Missense_Mutation p.V342I 0.27 deleterious(0.02) probably_damaging(0.942) TCGA-CV-A6K1-01 9 5810094 5810094 A G ERMP1 Missense_Mutation p.Y489H 0.21 deleterious(0) possibly_damaging(0.765) TCGA-CV-A6K1-01 9 75435995 75435995 C T TMC1 Silent p.F667F 0.27 TCGA-CV-A6K1-01 9 82337412 82337412 G T TLE4 Missense_Mutation p.G678V 0.27 deleterious(0) probably_damaging(1) TCGA-CV-A6K1-01 9 98232133 98232133 G A PTCH1 Silent p.R603R 0.33 TCGA-CV-A6K1-01 9 99697715 99697715 G A NUTM2G Missense_Mutation p.M273I 0.30 deleterious(0.01) possibly_damaging(0.761) TCGA-CV-A6K1-01 X 100538467 100538467 T - TAF7L Frame_Shift_Del p.T170Pfs*35 0.42 TCGA-CV-A6K1-01 X 110644382 110644382 G C DCX Missense_Mutation p.L262V 0.69 tolerated(0.14) possibly_damaging(0.529) TCGA-CV-A6K1-01 X 125298689 125298689 C T DCAF12L2 Missense_Mutation p.G407S 0.58 tolerated(0.35) benign(0.33) TCGA-CV-A6K1-01 X 125686648 125686648 C T DCAF12L1 5'UTR 0.71 TCGA-CV-A6K1-01 X 153216400 153216400 A G HCFC1 Missense_Mutation p.L1856P 0.63 deleterious(0) probably_damaging(0.986) TCGA-CV-A6K1-01 X 51637752 51637752 C - MAGED1 Frame_Shift_Del p.L27Sfs*32 0.59 TCGA-CV-A6K1-01 X 54784137 54784137 C T ITIH6 Silent p.S790S 0.65 TCGA-CV-A6K1-01 X 54841145 54841145 C A MAGED2 Missense_Mutation p.F441L 0.59 tolerated(0.08) possibly_damaging(0.835) TCGA-CV-A6K1-01 X 54955078 54955078 G A TRO Missense_Mutation p.E641K 0.53 deleterious(0.04) unknown(0) TCGA-CV-A6K1-01 X 65480037 65480037 G A HEPH Missense_Mutation p.M1098I 0.57 tolerated(0.09) benign(0.006) TCGA-CV-A6K1-01 X 78011321 78011321 C T LPAR4 Nonsense_Mutation p.Q319* 0.65 TCGA-CV-A6K2-01 10 100144783 100144783 G A PYROXD2 Silent p.F532F 0.13 TCGA-CV-A6K2-01 10 101190328 101190328 G A GOT1 5'UTR 0.17 TCGA-CV-A6K2-01 10 101507142 101507142 G A CUTC Missense_Mutation p.E190K 0.26 tolerated(0.26) benign(0.019) TCGA-CV-A6K2-01 10 101542527 101542527 G C ABCC2 5'UTR 0.23 TCGA-CV-A6K2-01 10 101590604 101590604 G T ABCC2 Missense_Mutation p.G960V 0.20 deleterious(0) probably_damaging(0.993) TCGA-CV-A6K2-01 10 103825450 103825450 C T HPS6 Silent p.A73A 0.78 TCGA-CV-A6K2-01 10 103906776 103906776 C G PPRC1 Missense_Mutation p.P1343A 0.15 tolerated(0.81) benign(0.001) TCGA-CV-A6K2-01 10 103908277 103908277 C T PPRC1 Missense_Mutation p.R1517W 0.23 deleterious(0) possibly_damaging(0.689) TCGA-CV-A6K2-01 10 11060047 11060047 G C CELF2 5'UTR 0.09 TCGA-CV-A6K2-01 10 112359528 112359528 G C SMC3 Missense_Mutation p.K795N 0.18 tolerated(0.34) benign(0.016) TCGA-CV-A6K2-01 10 115804945 115804945 G C ADRB1 Missense_Mutation p.E352Q 0.19 tolerated(0.3) benign(0.013) TCGA-CV-A6K2-01 10 116046112 116046112 G C VWA2 Missense_Mutation p.R471P 0.21 deleterious(0) probably_damaging(0.948) TCGA-CV-A6K2-01 10 12197844 12197844 C T SEC61A2 Missense_Mutation p.S177F 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 10 123842303 123842303 C T TACC2 Silent p.P96P 0.25 TCGA-CV-A6K2-01 10 123970668 123970668 G A TACC2 Missense_Mutation p.G2243E 0.19 benign(0.008) TCGA-CV-A6K2-01 10 124008654 124008654 G A TACC2 Silent p.A2881A 0.19 TCGA-CV-A6K2-01 10 125780896 125780896 G A CHST15 Missense_Mutation p.S408L 0.20 deleterious(0.02) benign(0.046) TCGA-CV-A6K2-01 10 127455440 127455440 G A MMP21 Missense_Mutation p.H501Y 0.33 deleterious(0) probably_damaging(0.99) TCGA-CV-A6K2-01 10 128796359 128796359 C G DOCK1 Missense_Mutation p.Q205E 0.17 tolerated(0.85) benign(0.042) TCGA-CV-A6K2-01 10 129877957 129877957 C G PTPRE Missense_Mutation p.L676V 0.23 tolerated(1) benign(0.378) TCGA-CV-A6K2-01 10 15172229 15172229 C G NMT2 Missense_Mutation p.E268Q 0.21 deleterious(0) possibly_damaging(0.88) TCGA-CV-A6K2-01 10 18242228 18242228 C T SLC39A12 Missense_Mutation p.S8L 0.25 tolerated_low_confidence(1) benign(0.005) TCGA-CV-A6K2-01 10 27037639 27037639 C T ABI1 Missense_Mutation p.D463N 0.27 tolerated(0.21) possibly_damaging(0.863) TCGA-CV-A6K2-01 10 27400992 27400992 G A YME1L1 Missense_Mutation p.L746F 0.19 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 10 28023669 28023669 G T MKX Missense_Mutation p.P185Q 0.16 tolerated(0.2) probably_damaging(0.999) TCGA-CV-A6K2-01 10 45652522 45652522 G C RP11-445N18.7 RNA 0.17 TCGA-CV-A6K2-01 10 48385882 48385882 C T RBP3 Silent p.K1070K 0.17 TCGA-CV-A6K2-01 10 4875575 4875575 G A AKR1E2 Missense_Mutation p.E81K 0.22 tolerated(1) benign(0.001) TCGA-CV-A6K2-01 10 4889384 4889384 C T AKR1E2 Silent p.L294L 0.18 TCGA-CV-A6K2-01 10 60559988 60559988 C T BICC1 Missense_Mutation p.S587L 0.31 deleterious(0.02) benign(0.031) TCGA-CV-A6K2-01 10 61832133 61832133 G A ANK3 Missense_Mutation p.H2836Y 0.20 benign(0.027) TCGA-CV-A6K2-01 10 61874040 61874040 C T ANK3 Missense_Mutation p.S964N 0.08 probably_damaging(0.989) TCGA-CV-A6K2-01 10 70152953 70152953 G C RUFY2 Missense_Mutation p.Q233E 0.30 tolerated(0.09) possibly_damaging(0.46) TCGA-CV-A6K2-01 10 70646267 70646267 C T STOX1 Silent p.N905N 0.14 TCGA-CV-A6K2-01 10 81925936 81925936 C G ANXA11 Silent p.L254L 0.26 TCGA-CV-A6K2-01 10 84711271 84711271 C T NRG3 Silent p.I367I 0.15 TCGA-CV-A6K2-01 10 87484168 87484168 G A GRID1 Missense_Mutation p.S600L 0.14 tolerated(0.14) benign(0.338) TCGA-CV-A6K2-01 10 89419718 89419718 G C PAPSS2 5'UTR 0.11 TCGA-CV-A6K2-01 10 95719898 95719898 C T PIPSL RNA 0.27 TCGA-CV-A6K2-01 10 96454787 96454787 G T CYP2C18 Nonsense_Mutation p.E199* 0.16 TCGA-CV-A6K2-01 10 96454828 96454828 G A CYP2C18 Nonsense_Mutation p.W212* 0.11 TCGA-CV-A6K2-01 10 96609722 96609722 G C CYP2C19 Missense_Mutation p.E400Q 0.22 deleterious(0.05) benign(0.309) TCGA-CV-A6K2-01 10 99003902 99003902 G C ARHGAP19 Silent p.L336L 0.24 TCGA-CV-A6K2-01 11 105924349 105924349 C T KBTBD3 Missense_Mutation p.R356Q 0.13 tolerated(0.26) probably_damaging(0.965) TCGA-CV-A6K2-01 11 10820941 10820941 G T EIF4G2 Missense_Mutation p.N785K 0.22 tolerated(0.08) benign(0.007) TCGA-CV-A6K2-01 11 117395727 117395727 C G DSCAML1 Missense_Mutation p.E304Q 0.20 tolerated(0.31) possibly_damaging(0.749) TCGA-CV-A6K2-01 11 118184489 118184489 C T CD3E Silent p.I140I 0.18 TCGA-CV-A6K2-01 11 118370550 118370550 G T KMT2A Missense_Mutation p.G2027V 0.30 probably_damaging(1) TCGA-CV-A6K2-01 11 121476202 121476202 C T SORL1 Nonsense_Mutation p.Q1624* 0.18 TCGA-CV-A6K2-01 11 12229683 12229683 C G MICAL2 Missense_Mutation p.Q196E 0.23 tolerated(1) benign(0.066) TCGA-CV-A6K2-01 11 124765072 124765072 G A ROBO4 Nonsense_Mutation p.Q352* 0.16 TCGA-CV-A6K2-01 11 128354930 128354930 G C ETS1 Missense_Mutation p.S217W 0.09 deleterious(0.02) possibly_damaging(0.869) TCGA-CV-A6K2-01 11 133714494 133714494 G A SPATA19 Silent p.S59S 0.14 TCGA-CV-A6K2-01 11 133788957 133788957 C G IGSF9B Intron 0.50 TCGA-CV-A6K2-01 11 134074826 134074826 C T NCAPD3 Missense_Mutation p.V353I 0.14 deleterious(0.01) benign(0.003) TCGA-CV-A6K2-01 11 1471018 1471018 C G BRSK2 Missense_Mutation p.I459M 0.19 deleterious(0.01) probably_damaging(0.921) TCGA-CV-A6K2-01 11 18057546 18057546 G C TPH1 Silent p.L87L 0.12 TCGA-CV-A6K2-01 11 20636262 20636262 C G SLC6A5 Missense_Mutation p.I341M 0.21 tolerated(0.06) benign(0.063) TCGA-CV-A6K2-01 11 31128423 31128423 C T DCDC1 Missense_Mutation p.E558K 0.18 tolerated(0.18) probably_damaging(0.916) TCGA-CV-A6K2-01 11 32124996 32124996 G A RCN1 Silent p.R286R 0.19 TCGA-CV-A6K2-01 11 33682490 33682490 C G KIAA1549L Nonsense_Mutation p.S1733* 0.28 TCGA-CV-A6K2-01 11 33689721 33689721 C G KIAA1549L 3'UTR 0.23 TCGA-CV-A6K2-01 11 34074029 34074029 C T CAPRIN1 Missense_Mutation p.S21L 0.32 tolerated_low_confidence(0.07) unknown(0) TCGA-CV-A6K2-01 11 4510973 4510973 C G OR52K1 Missense_Mutation p.F281L 0.17 tolerated(1) benign(0.012) TCGA-CV-A6K2-01 11 4608662 4608662 C G OR52I2 Missense_Mutation p.S207C 0.19 deleterious(0.01) benign(0.289) TCGA-CV-A6K2-01 11 46565585 46565585 C T AMBRA1 Silent p.V186V 0.20 TCGA-CV-A6K2-01 11 46842734 46842734 C A CKAP5 Nonsense_Mutation p.E17* 0.20 TCGA-CV-A6K2-01 11 5221755 5221755 C T OR51V1 Nonsense_Mutation p.W59* 0.16 TCGA-CV-A6K2-01 11 56019807 56019807 G A OR5T3 Silent p.L44L 0.18 TCGA-CV-A6K2-01 11 56128565 56128565 G T OR8J1 Missense_Mutation p.L281F 0.18 deleterious(0) probably_damaging(0.968) TCGA-CV-A6K2-01 11 5701153 5701153 C G TRIM5 Missense_Mutation p.L85F 0.18 deleterious(0.03) benign(0.249) TCGA-CV-A6K2-01 11 57068053 57068053 G C TNKS1BP1 Missense_Mutation p.N1717K 0.23 deleterious(0.01) possibly_damaging(0.83) TCGA-CV-A6K2-01 11 57095837 57095837 C T SSRP1 Silent p.K515K 0.23 TCGA-CV-A6K2-01 11 57310641 57310641 C T SMTNL1 Nonsense_Mutation p.Q194* 0.16 TCGA-CV-A6K2-01 11 58378451 58378451 G A ZFP91 Missense_Mutation p.E216K 0.13 deleterious_low_confidence(0.05) probably_damaging(0.98) TCGA-CV-A6K2-01 11 59405783 59405783 C A PATL1 3'UTR 0.33 TCGA-CV-A6K2-01 11 60531232 60531232 G T MS4A15 Missense_Mutation p.G9V 0.19 deleterious(0.01) probably_damaging(1) TCGA-CV-A6K2-01 11 60696151 60696151 C T TMEM132A Silent p.F195F 0.22 TCGA-CV-A6K2-01 11 62476303 62476303 C G GNG3 3'UTR 0.19 TCGA-CV-A6K2-01 11 62476319 62476319 C T GNG3 3'UTR 0.15 TCGA-CV-A6K2-01 11 62620850 62620850 C G SLC3A2 5'Flank 0.09 TCGA-CV-A6K2-01 11 64900938 64900938 C G SYVN1 Intron 0.12 TCGA-CV-A6K2-01 11 65375490 65375490 G C MAP3K11 Silent p.G324G 0.18 TCGA-CV-A6K2-01 11 6645054 6645054 C G DCHS1 Missense_Mutation p.G2618A 0.21 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K2-01 11 6898652 6898652 C T OR10A4 Silent p.L258L 0.16 TCGA-CV-A6K2-01 11 71716276 71716276 C T NUMA1 Intron 0.18 TCGA-CV-A6K2-01 11 71716366 71716366 C A NUMA1 Silent p.L1914L 0.19 TCGA-CV-A6K2-01 11 71724874 71724874 G A NUMA1 Silent p.S1225S 0.24 TCGA-CV-A6K2-01 11 71850461 71850461 G A FOLR3 Nonsense_Mutation p.W185* 0.14 TCGA-CV-A6K2-01 11 73679416 73679416 C T DNAJB13 Silent p.I211I 0.16 TCGA-CV-A6K2-01 11 74717448 74717448 C T NEU3 Missense_Mutation p.R433C 0.13 tolerated(0.33) benign(0.003) TCGA-CV-A6K2-01 11 77602820 77602820 G T INTS4 Silent p.P785P 0.17 TCGA-CV-A6K2-01 11 803171 803171 C T PIDD Intron 0.23 TCGA-CV-A6K2-01 11 85468819 85468819 C G SYTL2 5'UTR 0.11 TCGA-CV-A6K2-01 11 86108780 86108780 C T CCDC81 Silent p.T251T 0.12 TCGA-CV-A6K2-01 11 86118709 86118709 C G CCDC81 Missense_Mutation p.S312C 0.09 tolerated(0.08) possibly_damaging(0.754) TCGA-CV-A6K2-01 11 8737201 8737201 G C ST5 Silent p.L598L 0.18 TCGA-CV-A6K2-01 11 8737229 8737229 G C ST5 Nonsense_Mutation p.S589* 0.17 TCGA-CV-A6K2-01 11 94231442 94231442 G C ANKRD49 Missense_Mutation p.R155T 0.16 tolerated(0.49) benign(0.004) TCGA-CV-A6K2-01 11 9462001 9462001 G A IPO7 Splice_Site p.X899_splice 0.12 TCGA-CV-A6K2-01 11 9462019 9462019 G A IPO7 Missense_Mutation p.E905K 0.20 deleterious(0) benign(0.32) TCGA-CV-A6K2-01 11 9462025 9462025 G A IPO7 Missense_Mutation p.D907N 0.20 deleterious(0) possibly_damaging(0.597) TCGA-CV-A6K2-01 11 9749698 9749698 G C SWAP70 Silent p.L247L 0.18 TCGA-CV-A6K2-01 12 101776993 101776993 G A UTP20 Missense_Mutation p.E2611K 0.12 tolerated(0.29) benign(0.002) TCGA-CV-A6K2-01 12 104031885 104031885 C G STAB2 Silent p.G267G 0.08 TCGA-CV-A6K2-01 12 105445900 105445900 C G ALDH1L2 Missense_Mutation p.M501I 0.30 tolerated(0.41) benign(0.003) TCGA-CV-A6K2-01 12 105509444 105509444 G A KIAA1033 Missense_Mutation p.D125N 0.27 tolerated(0.24) benign(0.005) TCGA-CV-A6K2-01 12 109536374 109536375 - C UNG Frame_Shift_Ins p.V92Rfs*51 0.09 TCGA-CV-A6K2-01 12 112159481 112159481 G A ACAD10 Missense_Mutation p.M364I 0.21 tolerated(0.12) benign(0.053) TCGA-CV-A6K2-01 12 112460445 112460445 G T ERP29 Nonsense_Mutation p.E259* 0.11 TCGA-CV-A6K2-01 12 117387508 117387509 - G FBXW8 Frame_Shift_Ins 0.23 TCGA-CV-A6K2-01 12 117402570 117402570 C T FBXW8 Missense_Mutation p.S249L 0.18 tolerated(0.06) benign(0.007) TCGA-CV-A6K2-01 12 119594311 119594311 G A SRRM4 Missense_Mutation p.R515H 0.22 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-CV-A6K2-01 12 120597714 120597714 C T GCN1L1 Silent p.L888L 0.14 TCGA-CV-A6K2-01 12 122685313 122685313 G C LRRC43 Missense_Mutation p.K547N 0.19 deleterious(0) possibly_damaging(0.448) TCGA-CV-A6K2-01 12 123950359 123950359 C T SNRNP35 Missense_Mutation p.S96L 0.19 deleterious(0) probably_damaging(0.994) TCGA-CV-A6K2-01 12 124106419 124106419 C G EIF2B1 Missense_Mutation p.E268Q 0.23 tolerated(0.2) benign(0.004) TCGA-CV-A6K2-01 12 12514212 12514212 C T LOH12CR1 Missense_Mutation p.S44L 0.29 tolerated(0.36) benign(0.001) TCGA-CV-A6K2-01 12 12514243 12514243 C G LOH12CR1 Missense_Mutation p.I54M 0.29 deleterious(0.03) possibly_damaging(0.638) TCGA-CV-A6K2-01 12 15748014 15748014 C G PTPRO Intron 0.23 TCGA-CV-A6K2-01 12 18234075 18234075 G C RERGL 3'UTR 0.26 TCGA-CV-A6K2-01 12 19436611 19436611 G C PLEKHA5 Missense_Mutation p.E571Q 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-CV-A6K2-01 12 24995142 24995142 G A BCAT1 Missense_Mutation p.L243F 0.13 deleterious(0) probably_damaging(0.972) TCGA-CV-A6K2-01 12 26818867 26818867 C T ITPR2 Missense_Mutation p.M509I 0.18 tolerated(0.08) benign(0.396) TCGA-CV-A6K2-01 12 2922011 2922011 G C ITFG2 Missense_Mutation p.D29H 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 12 427289 427289 C T KDM5A Silent p.K960K 0.18 TCGA-CV-A6K2-01 12 4737714 4737714 C T AKAP3 Silent p.G118G 0.20 TCGA-CV-A6K2-01 12 50059692 50059692 C G FMNL3 Splice_Site p.X98_splice 0.22 TCGA-CV-A6K2-01 12 53777156 53777156 G A SP1 Silent p.Q475Q 0.13 TCGA-CV-A6K2-01 12 56994038 56994038 C T BAZ2A Silent p.E1615E 0.22 TCGA-CV-A6K2-01 12 57537482 57537482 C G LRP1 Missense_Mutation p.R117G 0.11 benign(0.006) TCGA-CV-A6K2-01 12 64436735 64436735 G A SRGAP1 Missense_Mutation p.E219K 0.17 deleterious(0.03) benign(0.391) TCGA-CV-A6K2-01 12 65471538 65471538 G C WIF1 Missense_Mutation p.H129D 0.11 deleterious(0.02) possibly_damaging(0.822) TCGA-CV-A6K2-01 12 6787533 6787533 G A ZNF384 Missense_Mutation p.S149L 0.29 deleterious(0.05) possibly_damaging(0.459) TCGA-CV-A6K2-01 12 70087539 70087539 G A BEST3 Silent p.V132V 0.16 TCGA-CV-A6K2-01 12 85677393 85677393 C G ALX1 Silent p.T90T 0.21 TCGA-CV-A6K2-01 12 88483083 88483083 G A CEP290 Missense_Mutation p.A1252V 0.17 probably_damaging(0.946) TCGA-CV-A6K2-01 12 92539336 92539336 G C BTG1 5'UTR 0.29 TCGA-CV-A6K2-01 12 94603376 94603376 C G PLXNC1 Missense_Mutation p.Q484E 0.18 tolerated(0.21) benign(0.001) TCGA-CV-A6K2-01 12 95887860 95887860 G A METAP2 Missense_Mutation p.E153K 0.18 deleterious(0.02) benign(0.115) TCGA-CV-A6K2-01 13 110815841 110815841 C T COL4A1 Silent p.Q1406Q 0.15 TCGA-CV-A6K2-01 13 113213691 113213691 G C TUBGCP3 Nonsense_Mutation p.S92* 0.12 TCGA-CV-A6K2-01 13 25274966 25274966 C G ATP12A Missense_Mutation p.S602C 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-CV-A6K2-01 13 27333650 27333650 G C GPR12 Nonsense_Mutation p.Y105* 0.16 TCGA-CV-A6K2-01 13 28494641 28494641 G T PDX1 Missense_Mutation p.M122I 0.24 deleterious(0) probably_damaging(0.991) TCGA-CV-A6K2-01 13 28539078 28539078 G A CDX2 Missense_Mutation p.H206Y 0.24 deleterious(0) possibly_damaging(0.495) TCGA-CV-A6K2-01 13 31711193 31711193 C T HSPH1 3'UTR 0.22 TCGA-CV-A6K2-01 13 32653152 32653152 C G FRY Missense_Mutation p.I84M 0.24 tolerated(0.26) benign(0.002) TCGA-CV-A6K2-01 13 42245279 42245279 C G VWA8 Missense_Mutation p.E1472Q 0.25 tolerated(0.57) benign(0.002) TCGA-CV-A6K2-01 13 45008644 45008644 C T TSC22D1 3'UTR 0.31 TCGA-CV-A6K2-01 13 45563316 45563316 G A NUFIP1 Missense_Mutation p.L86F 0.25 deleterious_low_confidence(0.04) benign(0.201) TCGA-CV-A6K2-01 13 52509015 52509015 G A ATP7B Silent p.V1425V 0.17 TCGA-CV-A6K2-01 13 53001179 53001179 G C VPS36 Nonsense_Mutation p.S195* 0.25 TCGA-CV-A6K2-01 13 61084791 61084791 G A TDRD3 Missense_Mutation p.R348K 0.24 tolerated(0.15) probably_damaging(0.999) TCGA-CV-A6K2-01 13 61987714 61987714 G A PCDH20 Missense_Mutation p.S173F 0.15 deleterious(0.04) benign(0.044) TCGA-CV-A6K2-01 14 102675970 102675970 C G WDR20 Missense_Mutation p.S519C 0.20 deleterious(0) possibly_damaging(0.682) TCGA-CV-A6K2-01 14 103173691 103173691 C G RCOR1 Missense_Mutation p.L168V 0.17 deleterious(0) probably_damaging(0.996) TCGA-CV-A6K2-01 14 104001083 104001083 C G TRMT61A Missense_Mutation p.F265L 0.28 tolerated(0.67) benign(0.012) TCGA-CV-A6K2-01 14 104205305 104205305 C T PPP1R13B Missense_Mutation p.R883K 0.18 deleterious(0) possibly_damaging(0.57) TCGA-CV-A6K2-01 14 104481099 104481099 C T TDRD9 Missense_Mutation p.S715L 0.13 tolerated(0.15) benign(0.133) TCGA-CV-A6K2-01 14 105406785 105406785 G A AHNAK2 Silent p.I5001I 0.15 TCGA-CV-A6K2-01 14 105420816 105420816 G A AHNAK2 Silent p.L324L 0.20 TCGA-CV-A6K2-01 14 105609913 105609913 G A JAG2 Silent p.I1049I 0.26 TCGA-CV-A6K2-01 14 106321783 106321783 C A IGHM Nonsense_Mutation p.E151* 0.26 TCGA-CV-A6K2-01 14 19378043 19378043 C T OR11H12 Silent p.I150I 0.14 TCGA-CV-A6K2-01 14 21960908 21960908 C G TOX4 Missense_Mutation p.S378C 0.24 tolerated(0.09) possibly_damaging(0.908) TCGA-CV-A6K2-01 14 22434046 22434046 C G TRAV12-3 Silent p.L33L 0.17 TCGA-CV-A6K2-01 14 22573833 22573833 C T TRAV24 Intron 0.44 TCGA-CV-A6K2-01 14 23447553 23447553 C T AJUBA Missense_Mutation p.G370R 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-CV-A6K2-01 14 23447576 23447579 TGGG - AJUBA Frame_Shift_Del p.T361Sfs*48 0.21 TCGA-CV-A6K2-01 14 23886113 23886113 C T MYH7 Silent p.E1536E 0.19 TCGA-CV-A6K2-01 14 24761846 24761846 C G DHRS1 Intron 0.13 TCGA-CV-A6K2-01 14 45564603 45564603 C G PRPF39 Missense_Mutation p.S54C 0.21 tolerated(0.07) possibly_damaging(0.649) TCGA-CV-A6K2-01 14 50044323 50044323 C G RPS29 3'UTR 0.16 TCGA-CV-A6K2-01 14 50088129 50088129 G A MGAT2 Missense_Mutation p.R48Q 0.27 tolerated(0.25) possibly_damaging(0.716) TCGA-CV-A6K2-01 14 53138357 53138357 C T ERO1L Missense_Mutation p.E167K 0.18 tolerated(0.44) possibly_damaging(0.761) TCGA-CV-A6K2-01 14 57268852 57268852 G C OTX2 Missense_Mutation p.I165M 0.24 deleterious(0.02) possibly_damaging(0.828) TCGA-CV-A6K2-01 14 61187080 61187080 G C SIX4 Missense_Mutation p.S316C 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-CV-A6K2-01 14 64608224 64608224 C G SYNE2 Missense_Mutation p.Q5048E 0.15 possibly_damaging(0.881) TCGA-CV-A6K2-01 14 64882110 64882110 C G MTHFD1 Missense_Mutation p.S92C 0.22 deleterious(0.01) benign(0.09) TCGA-CV-A6K2-01 14 70253015 70253015 C T SLC10A1 Missense_Mutation p.M122I 0.24 deleterious(0.04) possibly_damaging(0.461) TCGA-CV-A6K2-01 14 71443670 71443670 G C PCNX Missense_Mutation p.D206H 0.07 tolerated(0.1) possibly_damaging(0.895) TCGA-CV-A6K2-01 14 73733290 73733290 C T PAPLN Silent p.F1088F 0.20 TCGA-CV-A6K2-01 14 74824428 74824428 C T VRTN Silent p.F314F 0.10 TCGA-CV-A6K2-01 14 77944663 77944663 C T ISM2 Missense_Mutation p.E374K 0.20 tolerated(0.18) possibly_damaging(0.636) TCGA-CV-A6K2-01 14 90420300 90420300 C G EFCAB11 Missense_Mutation p.E41Q 0.23 deleterious(0) possibly_damaging(0.823) TCGA-CV-A6K2-01 14 92470853 92470853 C T TRIP11 Missense_Mutation p.R1156K 0.35 tolerated(0.34) benign(0.005) TCGA-CV-A6K2-01 14 94088400 94088400 G C UNC79 Silent p.L1430L 0.20 TCGA-CV-A6K2-01 14 94845670 94845670 C T SERPINA1 Intron 0.27 TCGA-CV-A6K2-01 14 95109803 95109803 C G SERPINA13P Intron 0.19 TCGA-CV-A6K2-01 14 96775928 96775928 C T ATG2B Missense_Mutation p.D1389N 0.27 tolerated(0.21) benign(0.022) TCGA-CV-A6K2-01 15 102242581 102242581 G C TARSL2 Nonsense_Mutation p.S361* 0.16 TCGA-CV-A6K2-01 15 22706012 22706012 G A AC116165.1 5'Flank 0.21 TCGA-CV-A6K2-01 15 23811455 23811455 G A MKRN3 Missense_Mutation p.E176K 0.19 deleterious(0.02) benign(0.162) TCGA-CV-A6K2-01 15 25958823 25958823 G A ATP10A Missense_Mutation p.S781L 0.29 tolerated(0.09) benign(0.158) TCGA-CV-A6K2-01 15 28493761 28493761 G C HERC2 Missense_Mutation p.Q1058E 0.36 benign(0.275) TCGA-CV-A6K2-01 15 29561130 29561130 C G NDNL2 Missense_Mutation p.K260N 0.19 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 15 31202838 31202838 C T FAN1 Missense_Mutation p.S466F 0.12 tolerated(0.54) probably_damaging(0.959) TCGA-CV-A6K2-01 15 31776545 31776545 G A OTUD7A Missense_Mutation p.S578L 0.19 tolerated(0.07) benign(0.148) TCGA-CV-A6K2-01 15 35185891 35185891 C T AQR Silent p.R848R 0.07 TCGA-CV-A6K2-01 15 38786683 38786683 C T RASGRP1 Missense_Mutation p.R720K 0.33 tolerated_low_confidence(0.37) probably_damaging(0.992) TCGA-CV-A6K2-01 15 40675205 40675205 G A KNSTRN Missense_Mutation p.E57K 0.20 tolerated_low_confidence(0.76) benign(0.003) TCGA-CV-A6K2-01 15 40763941 40763941 G A CHST14 Missense_Mutation p.D177N 0.20 tolerated(0.24) benign(0.096) TCGA-CV-A6K2-01 15 40917154 40917154 G C CASC5 Missense_Mutation p.L1590F 0.23 tolerated(0.08) benign(0.033) TCGA-CV-A6K2-01 15 41961828 41961828 C T MGA Nonsense_Mutation p.Q246* 0.17 TCGA-CV-A6K2-01 15 42041056 42041056 C T MGA Silent p.L1812L 0.26 TCGA-CV-A6K2-01 15 42153688 42153688 G A SPTBN5 Silent p.L2582L 0.23 TCGA-CV-A6K2-01 15 42652175 42652175 G C CAPN3 Missense_Mutation p.E58Q 0.19 tolerated(0.37) benign(0.022) TCGA-CV-A6K2-01 15 42691687 42691687 C G CAPN3 Intron 0.09 TCGA-CV-A6K2-01 15 49447763 49447763 C G COPS2 Missense_Mutation p.E5Q 0.10 deleterious(0.01) unknown(0) TCGA-CV-A6K2-01 15 50152430 50152430 G C ATP8B4 Silent p.T1180T 0.18 TCGA-CV-A6K2-01 15 50215688 50215688 C T ATP8B4 Missense_Mutation p.R549Q 0.26 deleterious(0.03) benign(0.036) TCGA-CV-A6K2-01 15 51787314 51787314 C T DMXL2 Missense_Mutation p.E1564K 0.23 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K2-01 15 55931941 55931941 G A PRTG Silent p.H741H 0.24 TCGA-CV-A6K2-01 15 62299582 62299582 G C VPS13C Silent p.L405L 0.26 TCGA-CV-A6K2-01 15 66180057 66180057 C T RAB11A Missense_Mutation p.S177F 0.32 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-CV-A6K2-01 15 72193586 72193586 G C MYO9A Silent p.V1032V 0.39 TCGA-CV-A6K2-01 15 72638536 72638536 C T HEXA Intron 0.25 TCGA-CV-A6K2-01 15 75146972 75146972 G T SCAMP2 Missense_Mutation p.L26M 0.12 tolerated(0.16) benign(0.065) TCGA-CV-A6K2-01 15 79749474 79749474 G C KIAA1024 Missense_Mutation p.E329Q 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-CV-A6K2-01 15 80415055 80415055 C G ZFAND6 Missense_Mutation p.Q93E 0.16 tolerated(0.16) benign(0.071) TCGA-CV-A6K2-01 15 89867048 89867048 G C POLG Missense_Mutation p.L719V 0.15 tolerated(0.55) benign(0.004) TCGA-CV-A6K2-01 15 90335531 90335531 G C ANPEP Silent p.V796V 0.15 TCGA-CV-A6K2-01 15 91479549 91479549 C G UNC45A Silent p.L95L 0.18 TCGA-CV-A6K2-01 15 91549610 91549610 C T VPS33B Missense_Mutation p.E282K 0.09 tolerated(0.06) benign(0.027) TCGA-CV-A6K2-01 16 10992553 10992553 G A CIITA Missense_Mutation p.D108N 0.12 deleterious(0.01) possibly_damaging(0.899) TCGA-CV-A6K2-01 16 11369770 11369770 C T PRM2 Missense_Mutation p.C99Y 0.23 unknown(0) TCGA-CV-A6K2-01 16 12172706 12172706 C G SNX29 Missense_Mutation p.P446A 0.25 tolerated(0.08) benign(0.002) TCGA-CV-A6K2-01 16 14328027 14328027 C T MKL2 Missense_Mutation p.P240S 0.21 deleterious(0.05) benign(0.02) TCGA-CV-A6K2-01 16 18796110 18796110 G C RPS15A Silent p.L83L 0.08 TCGA-CV-A6K2-01 16 1995860 1995860 C T RPL3L Silent p.K341K 0.17 TCGA-CV-A6K2-01 16 20851093 20851093 G C AC004381.6 Missense_Mutation p.R467T 0.16 tolerated(0.13) possibly_damaging(0.756) TCGA-CV-A6K2-01 16 2522374 2522374 C G NTN3 Silent p.L224L 0.29 TCGA-CV-A6K2-01 16 29819467 29819467 G A MAZ Intron 0.35 TCGA-CV-A6K2-01 16 30040777 30040777 G A FAM57B Missense_Mutation p.S62F 0.18 deleterious(0) probably_damaging(0.988) TCGA-CV-A6K2-01 16 30676372 30676372 G A FBRS Missense_Mutation p.G527E 0.21 probably_damaging(0.995) TCGA-CV-A6K2-01 16 31336820 31336820 G C ITGAM Splice_Site p.X837_splice 0.23 TCGA-CV-A6K2-01 16 31341829 31341829 C T ITGAM Missense_Mutation p.S1061L 0.18 tolerated(0.35) benign(0.028) TCGA-CV-A6K2-01 16 3139625 3139625 G A ZSCAN10 Missense_Mutation p.R549W 0.31 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 16 31496210 31496210 C T SLC5A2 Missense_Mutation p.A90V 0.18 deleterious(0.01) possibly_damaging(0.908) TCGA-CV-A6K2-01 16 4382387 4382387 C T GLIS2 Silent p.L36L 0.24 TCGA-CV-A6K2-01 16 48247428 48247428 G A ABCC11 Missense_Mutation p.R428W 0.08 deleterious(0.02) benign(0.299) TCGA-CV-A6K2-01 16 48396174 48396174 G A SIAH1 Nonsense_Mutation p.Q87* 0.11 TCGA-CV-A6K2-01 16 49670876 49670876 G C ZNF423 Missense_Mutation p.F729L 0.08 deleterious(0.01) probably_damaging(1) TCGA-CV-A6K2-01 16 50383954 50383954 G A BRD7 Nonsense_Mutation p.Q191* 0.06 TCGA-CV-A6K2-01 16 58018668 58018668 C A TEPP Missense_Mutation p.F193L 0.44 deleterious(0.05) benign(0.129) TCGA-CV-A6K2-01 16 58051337 58051337 C G USB1 Missense_Mutation p.F201L 0.19 deleterious(0) probably_damaging(0.951) TCGA-CV-A6K2-01 16 603532 603532 C A CAPN15 3'UTR 0.17 TCGA-CV-A6K2-01 16 628881 628881 C T PIGQ Missense_Mutation p.S389L 0.09 tolerated(0.09) possibly_damaging(0.684) TCGA-CV-A6K2-01 16 67235706 67235706 C T ELMO3 Missense_Mutation p.S380L 0.20 tolerated(0.4) benign(0.001) TCGA-CV-A6K2-01 16 67470617 67470617 C T HSD11B2 Missense_Mutation p.S310L 0.12 tolerated(0.65) benign(0.03) TCGA-CV-A6K2-01 16 67860627 67860627 C T TSNAXIP1 Silent p.F424F 0.23 TCGA-CV-A6K2-01 16 68404995 68404995 C G SMPD3 Missense_Mutation p.E364Q 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 16 69333548 69333548 C T SNTB2 Silent p.F467F 0.17 TCGA-CV-A6K2-01 16 69744855 69744855 G A NQO1 3'UTR 0.19 TCGA-CV-A6K2-01 16 70926406 70926406 G A HYDIN Missense_Mutation p.S3092L 0.13 benign(0) TCGA-CV-A6K2-01 16 72184546 72184546 C T PMFBP1 Silent p.V199V 0.16 TCGA-CV-A6K2-01 16 81031011 81031011 G C CMC2 5'UTR 0.14 TCGA-CV-A6K2-01 16 84474551 84474551 G A ATP2C2 Missense_Mutation p.G433E 0.20 tolerated(0.17) probably_damaging(1) TCGA-CV-A6K2-01 16 88747560 88747560 G A SNAI3 Silent p.I213I 0.06 TCGA-CV-A6K2-01 16 89799803 89799803 G C ZNF276 Missense_Mutation p.K421N 0.19 tolerated(0.51) benign(0.015) TCGA-CV-A6K2-01 17 10362664 10362664 G A MYH4 Silent p.F497F 0.14 TCGA-CV-A6K2-01 17 17701767 17701767 C T RAI1 Silent p.V1835V 0.16 TCGA-CV-A6K2-01 17 20108932 20108932 G C SPECC1 Missense_Mutation p.E524Q 0.21 deleterious(0) benign(0.052) TCGA-CV-A6K2-01 17 27419947 27419947 C G MYO18A Missense_Mutation p.D1667H 0.18 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K2-01 17 29283366 29283366 C T ADAP2 Silent p.L330L 0.15 TCGA-CV-A6K2-01 17 33998857 33998857 G A AP2B1 Missense_Mutation p.D706N 0.21 tolerated(0.05) probably_damaging(0.913) TCGA-CV-A6K2-01 17 34893953 34893953 G A PIGW Missense_Mutation p.D335N 0.16 deleterious(0.02) benign(0.215) TCGA-CV-A6K2-01 17 35634007 35634007 C A ACACA Missense_Mutation p.A241S 0.20 deleterious(0.02) benign(0.023) TCGA-CV-A6K2-01 17 35902354 35902354 G C SYNRG Silent p.T974T 0.23 TCGA-CV-A6K2-01 17 36359043 36359043 C G RP11-1407O15.2 Splice_Site p.X217_splice 0.04 TCGA-CV-A6K2-01 17 36361737 36361737 G C RP11-1407O15.2 Nonsense_Mutation p.S203* 0.05 TCGA-CV-A6K2-01 17 37599807 37599807 G C MED1 Silent p.L69L 0.12 TCGA-CV-A6K2-01 17 38640807 38640807 G C TNS4 Missense_Mutation p.S477C 0.18 deleterious(0.02) benign(0.272) TCGA-CV-A6K2-01 17 39120018 39120018 G C KRT39 Missense_Mutation p.S190C 0.18 deleterious(0.01) probably_damaging(1) TCGA-CV-A6K2-01 17 39506982 39506982 C T KRT33A Missense_Mutation p.R13H 0.19 tolerated(0.27) probably_damaging(0.984) TCGA-CV-A6K2-01 17 39726123 39726123 C T KRT9 Silent p.K290K 0.15 TCGA-CV-A6K2-01 17 4060257 4060257 C T CYB5D2 Missense_Mutation p.P226S 0.22 deleterious(0.03) benign(0.299) TCGA-CV-A6K2-01 17 40997568 40997568 C G AOC2 Missense_Mutation p.Q309E 0.23 tolerated(0.08) benign(0.041) TCGA-CV-A6K2-01 17 41251814 41251814 C G BRCA1 Missense_Mutation p.K175N 0.14 tolerated(1) benign(0) TCGA-CV-A6K2-01 17 42030315 42030315 C G PYY 3'UTR 0.17 TCGA-CV-A6K2-01 17 42987581 42987581 G C GFAP 3'Flank 0.16 TCGA-CV-A6K2-01 17 43159031 43159031 G A NMT1 Missense_Mutation p.D51N 0.14 deleterious_low_confidence(0.05) benign(0.174) TCGA-CV-A6K2-01 17 46114579 46114579 C T COPZ2 Intron 0.20 TCGA-CV-A6K2-01 17 4634749 4634749 G C MED11 5'UTR 0.28 TCGA-CV-A6K2-01 17 4635168 4635168 G A MED11 Silent p.A61A 0.23 TCGA-CV-A6K2-01 17 4638390 4638390 G A CXCL16 Missense_Mutation p.P258S 0.17 tolerated(0.1) probably_damaging(0.982) TCGA-CV-A6K2-01 17 4638451 4638451 G A CXCL16 Silent p.L237L 0.26 TCGA-CV-A6K2-01 17 4638732 4638732 G A CXCL16 Nonsense_Mutation p.Q144* 0.18 TCGA-CV-A6K2-01 17 4642687 4642687 G T CXCL16 Missense_Mutation p.S2Y 0.15 deleterious_low_confidence(0.03) benign(0.137) TCGA-CV-A6K2-01 17 46973029 46973029 C G ATP5G1 Silent p.L103L 0.22 TCGA-CV-A6K2-01 17 48450508 48450508 C T MRPL27 Silent p.L8L 0.13 TCGA-CV-A6K2-01 17 48655695 48655695 G A CACNA1G Missense_Mutation p.E691K 0.23 tolerated(0.06) benign(0.145) TCGA-CV-A6K2-01 17 48696166 48696166 G A CACNA1G Missense_Mutation p.E1860K 0.17 deleterious(0.01) probably_damaging(0.955) TCGA-CV-A6K2-01 17 54671879 54671879 G T NOG Nonsense_Mutation p.E99* 0.21 TCGA-CV-A6K2-01 17 54990842 54990842 C T TRIM25 Missense_Mutation p.E170K 0.23 tolerated(0.12) benign(0.103) TCGA-CV-A6K2-01 17 56058054 56058054 G A VEZF1 Silent p.L296L 0.19 TCGA-CV-A6K2-01 17 56270489 56270489 A G EPX Missense_Mutation p.K56R 0.26 tolerated(0.54) benign(0) TCGA-CV-A6K2-01 17 59761219 59761219 G C BRIP1 Missense_Mutation p.S1063W 0.12 deleterious_low_confidence(0.01) benign(0.04) TCGA-CV-A6K2-01 17 61899169 61899169 C T FTSJ3 Missense_Mutation p.E504K 0.11 tolerated(0.31) benign(0.05) TCGA-CV-A6K2-01 17 62034549 62034549 G A SCN4A Silent p.L783L 0.22 TCGA-CV-A6K2-01 17 62041913 62041913 G T SCN4A Missense_Mutation p.A456D 0.26 deleterious(0) possibly_damaging(0.641) TCGA-CV-A6K2-01 17 62492767 62492767 C T POLG2 Missense_Mutation p.R107Q 0.21 deleterious(0.01) probably_damaging(0.969) TCGA-CV-A6K2-01 17 65907895 65907895 C T BPTF Nonsense_Mutation p.Q1299* 0.13 TCGA-CV-A6K2-01 17 71344785 71344785 C T SDK2 Missense_Mutation p.E2040K 0.14 deleterious(0) possibly_damaging(0.601) TCGA-CV-A6K2-01 17 74005481 74005481 C T EVPL Missense_Mutation p.E1269K 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K2-01 17 74308953 74308953 C T PRPSAP1 Missense_Mutation p.E333K 0.18 tolerated(0.18) benign(0.213) TCGA-CV-A6K2-01 17 7577543 7577543 C G TP53 Missense_Mutation p.M246I 0.27 deleterious(0) possibly_damaging(0.811) TCGA-CV-A6K2-01 17 76420119 76420119 C T DNAH17 Silent p.K4442K 0.19 TCGA-CV-A6K2-01 17 76568947 76568947 C T DNAH17 Silent p.E125E 0.18 TCGA-CV-A6K2-01 17 76688531 76688531 C T CYTH1 Missense_Mutation p.D287N 0.21 deleterious(0.04) benign(0.287) TCGA-CV-A6K2-01 17 77710960 77710960 G C ENPP7 Missense_Mutation p.E383Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6K2-01 17 7800404 7800404 G C CHD3 Missense_Mutation p.E630Q 0.18 possibly_damaging(0.728) TCGA-CV-A6K2-01 17 78286925 78286925 C T RNF213 Silent p.L923L 0.17 TCGA-CV-A6K2-01 17 78444580 78444580 G C NPTX1 3'UTR 0.17 TCGA-CV-A6K2-01 17 79846022 79846022 C G ALYREF Splice_Site p.X261_splice 0.14 TCGA-CV-A6K2-01 17 80121215 80121215 C T CCDC57 Missense_Mutation p.G634D 0.13 tolerated(0.55) benign(0.009) TCGA-CV-A6K2-01 17 80726331 80726331 C T TBCD Silent p.L157L 0.19 TCGA-CV-A6K2-01 17 8224320 8224320 G A ARHGEF15 3'UTR 0.22 TCGA-CV-A6K2-01 17 8638800 8638800 C T CCDC42 Missense_Mutation p.E208K 0.12 tolerated(0.1) probably_damaging(0.98) TCGA-CV-A6K2-01 18 13387562 13387562 G A LDLRAD4 5'UTR 0.15 TCGA-CV-A6K2-01 18 19283684 19283684 C T ABHD3 Missense_Mutation p.E63K 0.20 tolerated(0.67) benign(0.004) TCGA-CV-A6K2-01 18 21355845 21355845 G A LAMA3 Missense_Mutation p.E455K 0.20 probably_damaging(0.967) TCGA-CV-A6K2-01 18 21422397 21422397 C A LAMA3 Silent p.G1125G 0.11 TCGA-CV-A6K2-01 18 24445643 24445643 C G AQP4 Missense_Mutation p.R4T 0.08 deleterious_low_confidence(0.01) benign(0.004) TCGA-CV-A6K2-01 18 28666558 28666558 G A DSC2 Missense_Mutation p.S308L 0.17 deleterious(0.05) benign(0.248) TCGA-CV-A6K2-01 18 28993578 28993578 C G DSG4 3'UTR 0.23 TCGA-CV-A6K2-01 18 3100321 3100321 C T MYOM1 Missense_Mutation p.E1227K 0.26 tolerated(0.16) benign(0.034) TCGA-CV-A6K2-01 18 31318979 31318979 A G ASXL3 Silent p.L537L 0.15 TCGA-CV-A6K2-01 18 31325454 31325454 A G ASXL3 Missense_Mutation p.K1881R 0.14 benign(0.059) TCGA-CV-A6K2-01 18 33613772 33613772 G C RPRD1A Silent p.L60L 0.18 TCGA-CV-A6K2-01 18 47404207 47404207 C G MYO5B Missense_Mutation p.E1108Q 0.04 tolerated(0.14) probably_damaging(0.938) TCGA-CV-A6K2-01 18 56247486 56247486 G C ALPK2 Silent p.L174L 0.22 TCGA-CV-A6K2-01 18 56587478 56587478 C G ZNF532 Silent p.L653L 0.23 TCGA-CV-A6K2-01 18 61018259 61018259 G A KDSR Silent p.I157I 0.15 TCGA-CV-A6K2-01 18 67843965 67843965 G A RTTN Silent p.I474I 0.20 TCGA-CV-A6K2-01 18 72226609 72226609 C G CNDP1 Missense_Mutation p.R69G 0.22 tolerated(0.07) benign(0.001) TCGA-CV-A6K2-01 18 72999678 72999678 G A TSHZ1 Silent p.A727A 0.25 TCGA-CV-A6K2-01 18 9195667 9195667 C T ANKRD12 Missense_Mutation p.S69L 0.22 tolerated(0.06) possibly_damaging(0.493) TCGA-CV-A6K2-01 19 11098481 11098481 C T SMARCA4 Silent p.P333P 0.14 TCGA-CV-A6K2-01 19 11406899 11406899 C T TSPAN16 5'UTR 0.18 TCGA-CV-A6K2-01 19 11485524 11485524 C T SWSAP1 Silent p.G35G 0.24 TCGA-CV-A6K2-01 19 11891352 11891352 C G ZNF441 Missense_Mutation p.S238C 0.10 tolerated(0.06) possibly_damaging(0.79) TCGA-CV-A6K2-01 19 12059292 12059292 C G ZNF700 Missense_Mutation p.H151Q 0.18 tolerated(0.15) probably_damaging(0.972) TCGA-CV-A6K2-01 19 12059635 12059635 C G ZNF700 Missense_Mutation p.Q266E 0.16 tolerated(0.1) benign(0.309) TCGA-CV-A6K2-01 19 12089148 12089148 C G ZNF763 Missense_Mutation p.Q140E 0.21 deleterious(0.04) benign(0.388) TCGA-CV-A6K2-01 19 12766681 12766681 G A MAN2B1 Missense_Mutation p.P553S 0.17 tolerated(0.22) benign(0.015) TCGA-CV-A6K2-01 19 12885628 12885628 C G HOOK2 Missense_Mutation p.Q43H 0.18 deleterious(0) benign(0.22) TCGA-CV-A6K2-01 19 13264165 13264165 C G IER2 Silent p.L55L 0.35 TCGA-CV-A6K2-01 19 15367072 15367072 G C BRD4 Silent p.L518L 0.17 TCGA-CV-A6K2-01 19 15574877 15574877 G A RASAL3 Missense_Mutation p.P98L 0.22 tolerated(0.48) benign(0.001) TCGA-CV-A6K2-01 19 16192732 16192732 G C TPM4 Missense_Mutation p.D84H 0.24 deleterious(0) possibly_damaging(0.701) TCGA-CV-A6K2-01 19 17615340 17615340 C T SLC27A1 Silent p.F620F 0.19 TCGA-CV-A6K2-01 19 19312802 19312802 C G NR2C2AP Missense_Mutation p.E118Q 0.13 tolerated(0.15) benign(0.411) TCGA-CV-A6K2-01 19 20002532 20002532 C G ZNF253 Nonsense_Mutation p.S159* 0.16 TCGA-CV-A6K2-01 19 2933611 2933611 G A ZNF77 Missense_Mutation p.S505L 0.21 deleterious(0.01) benign(0.191) TCGA-CV-A6K2-01 19 30498456 30498456 G A URI1 Silent p.V199V 0.18 TCGA-CV-A6K2-01 19 35250961 35250961 G T ZNF599 Missense_Mutation p.H249N 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 19 35556164 35556164 G A HPN Silent p.Q274Q 0.10 TCGA-CV-A6K2-01 19 35556472 35556472 C G HPN Missense_Mutation p.R313G 0.11 tolerated(0.45) benign(0.227) TCGA-CV-A6K2-01 19 35786323 35786323 C G MAG Silent p.L4L 0.15 TCGA-CV-A6K2-01 19 36673657 36673657 G C ZNF565 Nonsense_Mutation p.S404* 0.14 TCGA-CV-A6K2-01 19 36673808 36673808 G C ZNF565 Missense_Mutation p.Q354E 0.17 deleterious(0.03) benign(0.007) TCGA-CV-A6K2-01 19 36673814 36673814 G A ZNF565 Nonsense_Mutation p.R352* 0.19 TCGA-CV-A6K2-01 19 3746521 3746521 C G TJP3 Missense_Mutation p.I692M 0.09 deleterious(0) possibly_damaging(0.885) TCGA-CV-A6K2-01 19 37677947 37677947 C G ZNF585B Silent p.G164G 0.30 TCGA-CV-A6K2-01 19 38983224 38983224 G C RYR1 Missense_Mutation p.K2074N 0.33 benign(0.127) TCGA-CV-A6K2-01 19 39888208 39888208 C T MED29 Missense_Mutation p.P179S 0.26 tolerated(0.33) benign(0.028) TCGA-CV-A6K2-01 19 41235183 41235183 G A ITPKC Silent p.L444L 0.07 TCGA-CV-A6K2-01 19 41350671 41350671 C T CYP2A6 Missense_Mutation p.E390K 0.35 probably_damaging(0.982) TCGA-CV-A6K2-01 19 4157082 4157082 G A CREB3L3 Missense_Mutation p.E83K 0.17 tolerated(0.06) benign(0.056) TCGA-CV-A6K2-01 19 4164557 4164557 G A CREB3L3 Missense_Mutation p.E212K 0.25 deleterious(0) possibly_damaging(0.793) TCGA-CV-A6K2-01 19 41770636 41770636 G A HNRNPUL1 Silent p.A76A 0.24 TCGA-CV-A6K2-01 19 42813585 42813585 G A PRR19 5'UTR 0.20 TCGA-CV-A6K2-01 19 44418406 44418406 C T ZNF45 Silent p.G394G 0.12 TCGA-CV-A6K2-01 19 44590583 44590583 G C ZNF284 Missense_Mutation p.D318H 0.11 deleterious(0.02) benign(0.316) TCGA-CV-A6K2-01 19 44936400 44936400 G A ZNF229 Silent p.L79L 0.11 TCGA-CV-A6K2-01 19 4548067 4548067 G C SEMA6B Missense_Mutation p.R525G 0.30 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 19 47910191 47910191 G A MEIS3 Silent p.I390I 0.24 TCGA-CV-A6K2-01 19 48832733 48832733 C G EMP3 Silent p.L102L 0.11 TCGA-CV-A6K2-01 19 48925132 48925132 G A GRIN2D Missense_Mutation p.D728N 0.06 tolerated(0.07) benign(0.059) TCGA-CV-A6K2-01 19 49378883 49378883 G A PPP1R15A Missense_Mutation p.E560K 0.12 deleterious(0) probably_damaging(0.974) TCGA-CV-A6K2-01 19 49379229 49379229 G A PPP1R15A Silent p.%3D 0.18 TCGA-CV-A6K2-01 19 49622317 49622317 G T C19orf73 5'UTR 0.41 TCGA-CV-A6K2-01 19 50804959 50804959 C T MYH14 Silent p.F1837F 0.17 TCGA-CV-A6K2-01 19 51381788 51381788 C G KLK2 Missense_Mutation p.I253M 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-CV-A6K2-01 19 51955672 51955672 C T SIGLEC8 Silent p.L487L 0.33 TCGA-CV-A6K2-01 19 5207951 5207951 C T PTPRS Silent p.P1920P 0.16 TCGA-CV-A6K2-01 19 53473868 53473868 C T ZNF702P RNA 0.15 TCGA-CV-A6K2-01 19 53912244 53912244 C T ZNF765 Missense_Mutation p.S479L 0.11 deleterious(0.02) benign(0.062) TCGA-CV-A6K2-01 19 54760058 54760058 G A LILRB5 Missense_Mutation p.S168L 0.19 deleterious(0.02) possibly_damaging(0.892) TCGA-CV-A6K2-01 19 55087566 55087566 C T LILRA2 Silent p.L415L 0.06 TCGA-CV-A6K2-01 19 57134092 57134092 G C ZNF71 Silent p.T479T 0.26 TCGA-CV-A6K2-01 19 57765274 57765274 C G ZNF805 Missense_Mutation p.Q363E 0.05 deleterious(0.03) probably_damaging(0.95) TCGA-CV-A6K2-01 19 58579926 58579926 C G ZNF135 3'UTR 0.21 TCGA-CV-A6K2-01 19 7595342 7595342 C T MCOLN1 Silent p.L510L 0.19 TCGA-CV-A6K2-01 19 7975005 7975005 C T MAP2K7 Silent p.I108I 0.30 TCGA-CV-A6K2-01 19 7975351 7975351 C G MAP2K7 Missense_Mutation p.S154C 0.26 deleterious(0) probably_damaging(0.981) TCGA-CV-A6K2-01 19 7975451 7975451 C A MAP2K7 Silent p.I187I 0.22 TCGA-CV-A6K2-01 19 9063295 9063295 G A MUC16 Missense_Mutation p.H8051Y 0.24 unknown(0) TCGA-CV-A6K2-01 19 9067695 9067695 T C MUC16 Missense_Mutation p.E6584G 0.24 unknown(0) TCGA-CV-A6K2-01 19 9237605 9237605 C T OR7G3 Missense_Mutation p.D8N 0.16 tolerated(0.4) benign(0.001) TCGA-CV-A6K2-01 1 101342389 101342389 G A EXTL2 Silent p.I155I 0.19 TCGA-CV-A6K2-01 1 101456010 101456010 G A DPH5 Missense_Mutation p.S271F 0.16 deleterious(0.02) benign(0.14) TCGA-CV-A6K2-01 1 113661879 113661879 G A LRIG2 Missense_Mutation p.C902Y 0.18 deleterious(0) probably_damaging(0.976) TCGA-CV-A6K2-01 1 114439101 114439101 G A AP4B1 Intron 0.22 TCGA-CV-A6K2-01 1 116946585 116946585 C A ATP1A1 Silent p.R1011R 0.26 TCGA-CV-A6K2-01 1 11898422 11898422 G A CLCN6 Missense_Mutation p.E776K 0.21 tolerated(0.28) benign(0.029) TCGA-CV-A6K2-01 1 1226975 1226975 G C SCNN1D Missense_Mutation p.E798D 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.636) TCGA-CV-A6K2-01 1 1233785 1233785 G A ACAP3 Nonsense_Mutation p.Q294* 0.16 TCGA-CV-A6K2-01 1 12855677 12855677 C T PRAMEF1 Silent p.L319L 0.23 TCGA-CV-A6K2-01 1 144922249 144922249 G A PDE4DIP Nonsense_Mutation p.Q307* 0.09 TCGA-CV-A6K2-01 1 144931376 144931376 C T PDE4DIP Intron 0.07 TCGA-CV-A6K2-01 1 147230401 147230401 G A GJA5 Missense_Mutation p.R316C 0.25 deleterious(0.04) possibly_damaging(0.462) TCGA-CV-A6K2-01 1 149900841 149900841 C G MTMR11 3'UTR 0.32 TCGA-CV-A6K2-01 1 151006632 151006632 C G PRUNE Silent p.L428L 0.19 TCGA-CV-A6K2-01 1 151258894 151258894 C T ZNF687 Missense_Mutation p.P43S 0.18 tolerated(0.11) benign(0.002) TCGA-CV-A6K2-01 1 152279432 152279432 C G FLG Missense_Mutation p.E2644Q 0.08 benign(0.219) TCGA-CV-A6K2-01 1 152323297 152323297 G A FLG2 Missense_Mutation p.S2322F 0.20 possibly_damaging(0.485) TCGA-CV-A6K2-01 1 152326687 152326687 G C FLG2 Missense_Mutation p.S1192C 0.17 unknown(0) TCGA-CV-A6K2-01 1 154246309 154246309 C T HAX1 Missense_Mutation p.R126W 0.04 deleterious(0.01) possibly_damaging(0.54) TCGA-CV-A6K2-01 1 154317988 154317988 C G ATP8B2 Missense_Mutation p.F920L 0.19 deleterious(0.03) probably_damaging(0.986) TCGA-CV-A6K2-01 1 155001821 155001821 G A DCST2 Silent p.F410F 0.14 TCGA-CV-A6K2-01 1 155018896 155018896 G A DCST1 Missense_Mutation p.D477N 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 1 156243190 156243190 C T SMG5 Missense_Mutation p.R199K 0.22 deleterious(0) possibly_damaging(0.866) TCGA-CV-A6K2-01 1 156693940 156693940 C T ISG20L2 Silent p.Q316Q 0.18 TCGA-CV-A6K2-01 1 158390306 158390306 G A OR10K2 Silent p.V117V 0.25 TCGA-CV-A6K2-01 1 16464404 16464404 G C EPHA2 Nonsense_Mutation p.S419* 0.10 TCGA-CV-A6K2-01 1 16464591 16464591 G A EPHA2 Missense_Mutation p.R357C 0.19 deleterious(0) probably_damaging(0.971) TCGA-CV-A6K2-01 1 167868766 167868766 C G ADCY10 Missense_Mutation p.Q179H 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K2-01 1 167962616 167962616 G C DCAF6 Missense_Mutation p.D281H 0.21 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K2-01 1 16918493 16918493 C T NBPF1 Nonsense_Mutation p.W8* 0.08 TCGA-CV-A6K2-01 1 169483496 169483496 C T F5 3'UTR 0.25 TCGA-CV-A6K2-01 1 16953709 16953709 C T CROCCP2 3'Flank 0.09 TCGA-CV-A6K2-01 1 169565312 169565312 C T SELP Missense_Mutation p.G651E 0.14 deleterious(0.02) possibly_damaging(0.622) TCGA-CV-A6K2-01 1 172410875 172410875 G A PIGC Silent p.L296L 0.16 TCGA-CV-A6K2-01 1 173703428 173703428 G C KLHL20 Intron 0.26 TCGA-CV-A6K2-01 1 176903328 176903328 G C ASTN1 Silent p.V877V 0.21 TCGA-CV-A6K2-01 1 177928058 177928058 G C SEC16B Missense_Mutation p.Q351E 0.24 tolerated(0.63) possibly_damaging(0.76) TCGA-CV-A6K2-01 1 179609568 179609568 G A TDRD5 Silent p.V596V 0.08 TCGA-CV-A6K2-01 1 183933230 183933230 G C COLGALT2 Intron 0.16 TCGA-CV-A6K2-01 1 185114665 185114665 G A TRMT1L Silent p.I187I 0.09 TCGA-CV-A6K2-01 1 185987340 185987340 G A HMCN1 Missense_Mutation p.D1776N 0.22 probably_damaging(0.998) TCGA-CV-A6K2-01 1 192150586 192150586 G C RGS18 Missense_Mutation p.E150Q 0.15 tolerated(0.07) possibly_damaging(0.806) TCGA-CV-A6K2-01 1 193150182 193150182 G A B3GALT2 Missense_Mutation p.R171W 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 1 197889215 197889215 G A LHX9 Silent p.L96L 0.19 TCGA-CV-A6K2-01 1 197890661 197890661 C T LHX9 Missense_Mutation p.T202M 0.14 tolerated(0.17) benign(0.018) TCGA-CV-A6K2-01 1 201009439 201009439 C A CACNA1S Nonsense_Mutation p.E1764* 0.17 TCGA-CV-A6K2-01 1 201337314 201337314 C G TNNT2 Missense_Mutation p.E37Q 0.24 tolerated(0.42) unknown(0) TCGA-CV-A6K2-01 1 201437834 201437834 C G PHLDA3 Missense_Mutation p.K27N 0.20 deleterious(0) probably_damaging(0.994) TCGA-CV-A6K2-01 1 202407120 202407120 C T PPP1R12B Missense_Mutation p.R476W 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-CV-A6K2-01 1 202698947 202698947 G A KDM5B Missense_Mutation p.S1462F 0.19 deleterious(0.02) benign(0.229) TCGA-CV-A6K2-01 1 204518841 204518841 C T MDM4 3'UTR 0.32 TCGA-CV-A6K2-01 1 206785672 206785672 G C EIF2D Silent p.V8V 0.12 TCGA-CV-A6K2-01 1 212002666 212002666 C G LPGAT1 Splice_Site 0.22 TCGA-CV-A6K2-01 1 213186679 213186679 C G ANGEL2 Missense_Mutation p.W47C 0.19 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-CV-A6K2-01 1 216260110 216260110 G C USH2A Silent p.V1646V 0.18 TCGA-CV-A6K2-01 1 219347232 219347232 G A LYPLAL1 5'UTR 0.10 TCGA-CV-A6K2-01 1 228495222 228495222 C G OBSCN Silent p.L5109L 0.57 TCGA-CV-A6K2-01 1 228563713 228563713 C A OBSCN Silent p.G8554G 0.10 TCGA-CV-A6K2-01 1 229750160 229750160 C G TAF5L Missense_Mutation p.D24H 0.16 deleterious(0.01) possibly_damaging(0.866) TCGA-CV-A6K2-01 1 231069590 231069590 G C TTC13 Missense_Mutation p.F306L 0.17 tolerated(0.13) possibly_damaging(0.824) TCGA-CV-A6K2-01 1 231351159 231351159 G A TRIM67 Silent p.L775L 0.25 TCGA-CV-A6K2-01 1 23240082 23240082 C T EPHB2 3'UTR 0.22 TCGA-CV-A6K2-01 1 240071392 240071392 G C CHRM3 Missense_Mutation p.R214T 0.21 deleterious(0) probably_damaging(0.983) TCGA-CV-A6K2-01 1 24680895 24680895 C T GRHL3 Intron 0.21 TCGA-CV-A6K2-01 1 247012940 247012940 G A AHCTF1 Missense_Mutation p.S2132L 0.21 tolerated(0.11) benign(0.022) TCGA-CV-A6K2-01 1 248790382 248790382 C T OR2T11 Silent p.V16V 0.18 TCGA-CV-A6K2-01 1 28120102 28120102 G C STX12 Missense_Mutation p.E83Q 0.17 tolerated(0.08) benign(0.242) TCGA-CV-A6K2-01 1 29520610 29520610 G C MECR Missense_Mutation p.P349R 0.20 deleterious(0.02) benign(0.039) TCGA-CV-A6K2-01 1 29631880 29631880 G A PTPRU Silent p.V930V 0.19 TCGA-CV-A6K2-01 1 31351337 31351337 G C SDC3 Intron 0.44 TCGA-CV-A6K2-01 1 3328667 3328667 G C PRDM16 Missense_Mutation p.D636H 0.10 tolerated(0.16) benign(0.019) TCGA-CV-A6K2-01 1 33329737 33329737 G C FNDC5 3'UTR 0.14 TCGA-CV-A6K2-01 1 33646718 33646718 C T TRIM62 Missense_Mutation p.D106N 0.19 deleterious(0.01) possibly_damaging(0.745) TCGA-CV-A6K2-01 1 39901263 39901263 C T MACF1 Missense_Mutation p.H3878Y 0.18 probably_damaging(0.986) TCGA-CV-A6K2-01 1 40928283 40928283 C T ZFP69B Silent p.I209I 0.09 TCGA-CV-A6K2-01 1 42880523 42880523 G A RIMKLA Missense_Mutation p.E352K 0.19 deleterious_low_confidence(0.04) benign(0.359) TCGA-CV-A6K2-01 1 43201677 43201677 G A CLDN19 Silent p.F166F 0.38 TCGA-CV-A6K2-01 1 43738853 43738853 C G TMEM125 Missense_Mutation p.L154V 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-CV-A6K2-01 1 44442910 44442910 C - ATP6V0B Intron 0.16 TCGA-CV-A6K2-01 1 47025908 47025908 C T MKNK1 Silent p.Q390Q 0.10 TCGA-CV-A6K2-01 1 4834545 4834545 G A AJAP1 Missense_Mutation p.E408K 0.21 deleterious(0) benign(0.021) TCGA-CV-A6K2-01 1 50885279 50885279 C T DMRTA2 Silent p.S229S 0.38 TCGA-CV-A6K2-01 1 55452026 55452026 C T TMEM61 Missense_Mutation p.A91V 0.22 tolerated(0.09) benign(0.178) TCGA-CV-A6K2-01 1 6697276 6697276 G A DNAJC11 Silent p.I502I 0.14 TCGA-CV-A6K2-01 1 77094490 77094490 G C ST6GALNAC3 Nonstop_Mutation p.*306Sext*1 0.17 TCGA-CV-A6K2-01 1 77883349 77883349 G A AK5 Missense_Mutation p.M336I 0.20 tolerated(0.11) benign(0) TCGA-CV-A6K2-01 1 7797326 7797326 T C CAMTA1 Silent p.C1118C 0.20 TCGA-CV-A6K2-01 1 8025464 8025464 C T PARK7 Silent p.S57S 0.10 TCGA-CV-A6K2-01 1 85491874 85491874 C G MCOLN3 Missense_Mutation p.R309T 0.07 tolerated(0.2) benign(0.002) TCGA-CV-A6K2-01 1 85787128 85787128 C T DDAH1 3'UTR 0.19 TCGA-CV-A6K2-01 1 86919096 86919096 G C CLCA2 Missense_Mutation p.E734Q 0.14 tolerated(0.14) benign(0.016) TCGA-CV-A6K2-01 1 86921183 86921183 G C CLCA2 Missense_Mutation p.K935N 0.12 tolerated(0.15) benign(0.006) TCGA-CV-A6K2-01 1 86921187 86921187 G A CLCA2 Missense_Mutation p.E937K 0.13 deleterious_low_confidence(0.04) benign(0.01) TCGA-CV-A6K2-01 1 892378 892378 C G NOC2L Missense_Mutation p.E128Q 0.19 tolerated(0.07) possibly_damaging(0.71) TCGA-CV-A6K2-01 1 90179711 90179711 G C LRRC8C Missense_Mutation p.D528H 0.15 deleterious(0.04) possibly_damaging(0.879) TCGA-CV-A6K2-01 1 92979214 92979214 C G EVI5 Nonstop_Mutation p.*811Sext*4 0.14 TCGA-CV-A6K2-01 1 93576131 93576131 C T MTF2 Silent p.I78I 0.12 TCGA-CV-A6K2-01 1 99469973 99469973 G A LPPR5 Intron 0.25 TCGA-CV-A6K2-01 20 10603962 10603962 G A SLX4IP Missense_Mutation p.E388K 0.18 tolerated(0.13) benign(0.004) TCGA-CV-A6K2-01 20 31611262 31611262 G A BPIFB2 3'UTR 0.19 TCGA-CV-A6K2-01 20 33080393 33080393 G A ITCH Missense_Mutation p.D844N 0.18 deleterious(0.02) benign(0.058) TCGA-CV-A6K2-01 20 33173312 33173312 G A PIGU Silent p.F285F 0.20 TCGA-CV-A6K2-01 20 33356328 33356328 T A NCOA6 Silent p.G151G 0.17 TCGA-CV-A6K2-01 20 33879981 33879981 C T FAM83C Missense_Mutation p.E43K 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 20 37356202 37356202 C T SLC32A1 Silent p.L166L 0.05 TCGA-CV-A6K2-01 20 44598318 44598318 C G ZNF335 Missense_Mutation p.E72Q 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CV-A6K2-01 20 45718018 45718018 G C EYA2 Missense_Mutation p.E268Q 0.06 deleterious(0.01) probably_damaging(0.951) TCGA-CV-A6K2-01 20 47874031 47874031 T A ZNFX1 Missense_Mutation p.M863L 0.18 tolerated(0.77) benign(0.001) TCGA-CV-A6K2-01 20 52199198 52199198 G A ZNF217 Silent p.V56V 0.08 TCGA-CV-A6K2-01 20 55020994 55020994 G A CASS4 Silent p.L166L 0.11 TCGA-CV-A6K2-01 20 57430097 57430097 C T GNAS Nonsense_Mutation p.Q593* 0.19 TCGA-CV-A6K2-01 20 61828074 61828074 G C YTHDF1 Missense_Mutation p.R556G 0.16 deleterious_low_confidence(0.01) benign(0.176) TCGA-CV-A6K2-01 20 62505042 62505042 C G TPD52L2 Missense_Mutation p.L63V 0.21 deleterious(0.03) probably_damaging(0.923) TCGA-CV-A6K2-01 21 30699037 30699037 C T BACH1 Nonsense_Mutation p.Q298* 0.15 TCGA-CV-A6K2-01 21 30934044 30934044 C G GRIK1 Missense_Mutation p.E753Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K2-01 21 35469623 35469623 G C SLC5A3 Missense_Mutation p.G709A 0.13 tolerated(0.57) benign(0.059) TCGA-CV-A6K2-01 21 45744491 45744491 G A PFKL Missense_Mutation p.D590N 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-CV-A6K2-01 22 17983900 17983900 G A CECR2 Missense_Mutation p.G200D 0.07 deleterious(0.01) probably_damaging(1) TCGA-CV-A6K2-01 22 22664137 22664137 G C BMS1P20 RNA 0.17 TCGA-CV-A6K2-01 22 26114340 26114340 G A ADRBK2 Missense_Mutation p.E595K 0.20 tolerated_low_confidence(0.46) benign(0.026) TCGA-CV-A6K2-01 22 29439334 29439334 G A ZNRF3 Silent p.V183V 0.15 TCGA-CV-A6K2-01 22 29695726 29695726 G C EWSR1 Missense_Mutation p.D611H 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-CV-A6K2-01 22 29708037 29708037 G C GAS2L1 3'UTR 0.17 TCGA-CV-A6K2-01 22 30125450 30125450 C T CABP7 Silent p.I180I 0.18 TCGA-CV-A6K2-01 22 31837896 31837896 G C EIF4ENIF1 Silent p.L805L 0.09 TCGA-CV-A6K2-01 22 31838040 31838040 G A EIF4ENIF1 Silent p.S757S 0.09 TCGA-CV-A6K2-01 22 37902275 37902275 G A CARD10 Missense_Mutation p.T436M 0.26 deleterious(0.04) benign(0.018) TCGA-CV-A6K2-01 22 39826098 39826098 C T TAB1 Silent p.F462F 0.13 TCGA-CV-A6K2-01 22 40660829 40660829 G A TNRC6B Missense_Mutation p.E199K 0.13 tolerated(0.07) benign(0.129) TCGA-CV-A6K2-01 22 41574914 41574914 C G EP300 Nonsense_Mutation p.S2400* 0.27 TCGA-CV-A6K2-01 22 41832836 41832836 G C TOB2 Missense_Mutation p.Q172E 0.19 deleterious(0.03) possibly_damaging(0.897) TCGA-CV-A6K2-01 22 42341930 42341930 G A CENPM Missense_Mutation p.H73Y 0.12 deleterious(0.05) probably_damaging(0.995) TCGA-CV-A6K2-01 22 42998010 42998010 C T POLDIP3 Missense_Mutation p.R168K 0.16 tolerated(0.26) benign(0.002) TCGA-CV-A6K2-01 22 42998051 42998051 C G POLDIP3 Missense_Mutation p.Q154H 0.16 deleterious(0.03) benign(0.005) TCGA-CV-A6K2-01 22 42998880 42998880 C T POLDIP3 Missense_Mutation p.D116N 0.14 deleterious(0.03) probably_damaging(1) TCGA-CV-A6K2-01 22 45726490 45726490 G C FAM118A Missense_Mutation p.E177Q 0.31 tolerated(1) benign(0.001) TCGA-CV-A6K2-01 22 45931079 45931079 G A FBLN1 Splice_Site p.X262_splice 0.17 TCGA-CV-A6K2-01 2 10942635 10942635 A T PDIA6 Missense_Mutation p.Y51N 0.17 deleterious(0) probably_damaging(0.959) TCGA-CV-A6K2-01 2 111562899 111562899 G A ACOXL Missense_Mutation p.R227K 0.19 deleterious(0) probably_damaging(0.996) TCGA-CV-A6K2-01 2 113074098 113074098 C T ZC3H6 Nonsense_Mutation p.Q267* 0.13 TCGA-CV-A6K2-01 2 121740432 121740432 C G GLI2 Missense_Mutation p.H553Q 0.18 deleterious(0) probably_damaging(0.994) TCGA-CV-A6K2-01 2 128322843 128322843 C G MYO7B Silent p.L56L 0.14 TCGA-CV-A6K2-01 2 131487025 131487025 C T GPR148 Missense_Mutation p.L101F 0.18 tolerated(0.11) benign(0.026) TCGA-CV-A6K2-01 2 132288372 132288372 C G CCDC74A Missense_Mutation p.F172L 0.16 tolerated(0.54) benign(0.084) TCGA-CV-A6K2-01 2 133402678 133402678 G A GPR39 Silent p.L287L 0.19 TCGA-CV-A6K2-01 2 149803513 149803513 G T KIF5C Missense_Mutation p.L230F 0.21 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 2 162813634 162813634 G C SLC4A10 Missense_Mutation p.E893Q 0.31 tolerated(0.08) probably_damaging(0.998) TCGA-CV-A6K2-01 2 163302755 163302755 C G KCNH7 Missense_Mutation p.E443Q 0.12 tolerated(0.35) benign(0.007) TCGA-CV-A6K2-01 2 165365022 165365022 G A GRB14 Silent p.L322L 0.20 TCGA-CV-A6K2-01 2 175431795 175431795 C T WIPF1 Intron 0.15 TCGA-CV-A6K2-01 2 179334402 179334402 C T FKBP7 Missense_Mutation p.D162N 0.07 deleterious(0.03) probably_damaging(1) TCGA-CV-A6K2-01 2 179536920 179536920 C T TTN Missense_Mutation p.E11669K 0.36 TCGA-CV-A6K2-01 2 179587394 179587394 C T TTN Missense_Mutation p.R7411K 0.12 TCGA-CV-A6K2-01 2 179612932 179612932 G T TTN Intron 0.13 TCGA-CV-A6K2-01 2 183095807 183095807 C T PDE1A Missense_Mutation p.E173K 0.32 tolerated(0.09) possibly_damaging(0.516) TCGA-CV-A6K2-01 2 186678741 186678741 C G FSIP2 Nonsense_Mutation p.S6855* 0.17 TCGA-CV-A6K2-01 2 187627362 187627362 G A FAM171B Missense_Mutation p.D765N 0.37 deleterious(0) possibly_damaging(0.715) TCGA-CV-A6K2-01 2 191537844 191537844 G C NAB1 Missense_Mutation p.R324T 0.14 tolerated(0.17) benign(0.444) TCGA-CV-A6K2-01 2 192225432 192225432 C G MYO1B Missense_Mutation p.S213C 0.27 tolerated(0.19) possibly_damaging(0.908) TCGA-CV-A6K2-01 2 192225454 192225454 C T MYO1B Silent p.L220L 0.26 TCGA-CV-A6K2-01 2 198318314 198318314 G A COQ10B Silent p.L10L 0.10 TCGA-CV-A6K2-01 2 198949573 198949573 C G PLCL1 Silent p.L444L 0.23 TCGA-CV-A6K2-01 2 202131323 202131323 C G CASP8 Missense_Mutation p.I97M 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-CV-A6K2-01 2 202131498 202131498 C G CASP8 Missense_Mutation p.Q156E 0.19 deleterious(0.02) possibly_damaging(0.693) TCGA-CV-A6K2-01 2 202151261 202151261 C T CASP8 Nonsense_Mutation p.Q521* 0.15 TCGA-CV-A6K2-01 2 203839200 203839200 C G CARF Nonsense_Mutation p.S492* 0.19 TCGA-CV-A6K2-01 2 21231384 21231384 C T APOB Missense_Mutation p.E2786K 0.16 benign(0) TCGA-CV-A6K2-01 2 216299457 216299457 C A FN1 Missense_Mutation p.G80V 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 2 219267126 219267126 C G CTDSP1 Missense_Mutation p.Q126E 0.06 tolerated(0.06) possibly_damaging(0.74) TCGA-CV-A6K2-01 2 219289018 219289018 G T VIL1 Missense_Mutation p.V32F 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CV-A6K2-01 2 219890755 219890755 C T CCDC108 Missense_Mutation p.D780N 0.10 deleterious(0.01) possibly_damaging(0.477) TCGA-CV-A6K2-01 2 223497946 223497946 G A FARSB Silent p.V229V 0.05 TCGA-CV-A6K2-01 2 231079776 231079776 G C SP110 Missense_Mutation p.L69V 0.05 deleterious(0) possibly_damaging(0.567) TCGA-CV-A6K2-01 2 234905030 234905030 C T TRPM8 Silent p.F1000F 0.20 TCGA-CV-A6K2-01 2 241465732 241465732 C T ANKMY1 Missense_Mutation p.E273K 0.20 tolerated(0.12) benign(0.042) TCGA-CV-A6K2-01 2 242039081 242039081 G T MTERFD2 Missense_Mutation p.P84T 0.29 tolerated(0.08) possibly_damaging(0.468) TCGA-CV-A6K2-01 2 242202142 242202142 G A HDLBP Missense_Mutation p.A145V 0.14 tolerated(0.27) benign(0.027) TCGA-CV-A6K2-01 2 27702428 27702428 C T IFT172 Missense_Mutation p.R318Q 0.29 deleterious(0.01) possibly_damaging(0.747) TCGA-CV-A6K2-01 2 37368770 37368770 G C EIF2AK2 Missense_Mutation p.I105M 0.07 tolerated(0.18) benign(0.25) TCGA-CV-A6K2-01 2 46372238 46372238 G C PRKCE Missense_Mutation p.L533F 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 2 51255055 51255055 G A NRXN1 Silent p.I119I 0.23 TCGA-CV-A6K2-01 2 61524018 61524018 A T USP34 Missense_Mutation p.S1391T 0.14 deleterious(0) probably_damaging(0.978) TCGA-CV-A6K2-01 2 65540893 65540893 C G SPRED2 Silent p.V333V 0.14 TCGA-CV-A6K2-01 2 73651783 73651783 G C ALMS1 Silent p.L330L 0.13 TCGA-CV-A6K2-01 2 74687791 74687791 G A WBP1 Missense_Mutation p.E265K 0.10 tolerated_low_confidence(0.06) benign(0.03) TCGA-CV-A6K2-01 2 74687819 74687819 G C WBP1 3'UTR 0.20 TCGA-CV-A6K2-01 2 74902382 74902382 G A SEMA4F Missense_Mutation p.D415N 0.17 deleterious(0.01) probably_damaging(0.965) TCGA-CV-A6K2-01 2 85573134 85573134 C T RETSAT Missense_Mutation p.E361K 0.15 tolerated(0.21) benign(0.003) TCGA-CV-A6K2-01 2 88857216 88857216 T A EIF2AK3 3'UTR 0.15 TCGA-CV-A6K2-01 2 89117810 89117810 C A AC096579.13 RNA 0.17 TCGA-CV-A6K2-01 2 98354270 98354270 C T ZAP70 Silent p.I511I 0.17 TCGA-CV-A6K2-01 3 110852721 110852721 G A PVRL3 Missense_Mutation p.D437N 0.27 tolerated(0.19) probably_damaging(0.992) TCGA-CV-A6K2-01 3 111860076 111860076 C G SLC9C1 3'UTR 0.17 TCGA-CV-A6K2-01 3 112648154 112648154 C G CD200R1 Missense_Mutation p.D135H 0.11 deleterious(0) probably_damaging(0.98) TCGA-CV-A6K2-01 3 112709965 112709965 C T GTPBP8 Missense_Mutation p.P40L 0.13 deleterious(0) possibly_damaging(0.477) TCGA-CV-A6K2-01 3 118945719 118945719 C T B4GALT4 Silent p.L141L 0.09 TCGA-CV-A6K2-01 3 121547447 121547447 C G IQCB1 Missense_Mutation p.E45Q 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-CV-A6K2-01 3 122432775 122432775 C T PARP14 Nonsense_Mutation p.Q1276* 0.15 TCGA-CV-A6K2-01 3 124053324 124053324 C T KALRN Silent p.F541F 0.27 TCGA-CV-A6K2-01 3 124627121 124627121 G A MUC13 Missense_Mutation p.S470L 0.17 tolerated(0.13) benign(0.069) TCGA-CV-A6K2-01 3 126138594 126138594 C T CCDC37 Silent p.L282L 0.23 TCGA-CV-A6K2-01 3 12880876 12880876 C G RPL32 Missense_Mutation p.E84Q 0.22 deleterious(0.01) possibly_damaging(0.854) TCGA-CV-A6K2-01 3 128840276 128840276 G C RAB43 Missense_Mutation p.F19L 0.08 deleterious(0.03) probably_damaging(0.993) TCGA-CV-A6K2-01 3 130686192 130686192 G A ATP2C1 Missense_Mutation p.D447N 0.19 tolerated(1) benign(0.059) TCGA-CV-A6K2-01 3 140401612 140401612 G C TRIM42 Missense_Mutation p.R217P 0.19 deleterious(0) probably_damaging(0.985) TCGA-CV-A6K2-01 3 143212502 143212502 C A SLC9A9 Missense_Mutation p.M436I 0.18 deleterious(0.05) probably_damaging(0.937) TCGA-CV-A6K2-01 3 150873977 150873977 C T MED12L Nonsense_Mutation p.R196* 0.19 TCGA-CV-A6K2-01 3 151166890 151166890 C G IGSF10 Silent p.L293L 0.15 TCGA-CV-A6K2-01 3 154146952 154146952 G A GPR149 Silent p.L151L 0.06 TCGA-CV-A6K2-01 3 15475852 15475852 C T EAF1 Intron 0.22 TCGA-CV-A6K2-01 3 155200226 155200226 C T PLCH1 Missense_Mutation p.E1205K 0.09 tolerated_low_confidence(0.89) benign(0.142) TCGA-CV-A6K2-01 3 157082177 157082177 C A VEPH1 Missense_Mutation p.A418S 0.27 tolerated(0.53) benign(0.004) TCGA-CV-A6K2-01 3 164905757 164905757 G A SLITRK3 Silent p.L954L 0.27 TCGA-CV-A6K2-01 3 167045805 167045805 G A ZBBX Nonsense_Mutation p.Q263* 0.20 TCGA-CV-A6K2-01 3 182870195 182870195 G A LAMP3 Nonsense_Mutation p.Q286* 0.25 TCGA-CV-A6K2-01 3 183859730 183859730 G C EIF2B5 Missense_Mutation p.D392H 0.14 deleterious(0.01) benign(0.017) TCGA-CV-A6K2-01 3 186769125 186769125 G A ST6GAL1 Missense_Mutation p.M232I 0.09 benign(0.004) TCGA-CV-A6K2-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.25 tolerated(0.19) possibly_damaging(0.569) TCGA-CV-A6K2-01 3 193384985 193384985 G C OPA1 Missense_Mutation p.E949Q 0.16 tolerated(0.11) benign(0.222) TCGA-CV-A6K2-01 3 19575324 19575324 G A KCNH8 Silent p.T1019T 0.16 TCGA-CV-A6K2-01 3 30732942 30732942 G A TGFBR2 Missense_Mutation p.E544K 0.15 deleterious(0) probably_damaging(0.992) TCGA-CV-A6K2-01 3 35763098 35763098 G C ARPP21 Missense_Mutation p.G299R 0.14 tolerated(0.45) benign(0.312) TCGA-CV-A6K2-01 3 38537876 38537876 C T EXOG Silent p.I6I 0.10 TCGA-CV-A6K2-01 3 42264824 42264824 G A TRAK1 Silent p.L819L 0.14 TCGA-CV-A6K2-01 3 42906894 42906894 C G ACKR2 Missense_Mutation p.I300M 0.04 tolerated(0.07) possibly_damaging(0.773) TCGA-CV-A6K2-01 3 46574374 46574374 G C LRRC2 Silent p.L172L 0.19 TCGA-CV-A6K2-01 3 48719787 48719787 G A NCKIPSD Silent p.L160L 0.21 TCGA-CV-A6K2-01 3 49314082 49314082 G A C3orf62 Missense_Mutation p.S75F 0.21 tolerated(0.32) benign(0.246) TCGA-CV-A6K2-01 3 49321937 49321937 G C USP4 Silent p.L784L 0.27 TCGA-CV-A6K2-01 3 51669689 51669689 G A RAD54L2 Missense_Mutation p.R408K 0.14 deleterious(0) benign(0.309) TCGA-CV-A6K2-01 3 52824845 52824845 G A ITIH1 Missense_Mutation p.R801Q 0.19 tolerated(0.68) benign(0.055) TCGA-CV-A6K2-01 3 53890958 53890958 G A IL17RB Missense_Mutation p.R206K 0.09 tolerated(0.53) benign(0.003) TCGA-CV-A6K2-01 3 56468906 56468906 G C ERC2 Missense_Mutation p.L44V 0.21 deleterious(0.01) probably_damaging(0.952) TCGA-CV-A6K2-01 3 56647746 56647746 G A CCDC66 Missense_Mutation p.E512K 0.15 deleterious(0) possibly_damaging(0.773) TCGA-CV-A6K2-01 3 58728270 58728270 C T C3orf67 Missense_Mutation p.E537K 0.10 deleterious(0) probably_damaging(0.996) TCGA-CV-A6K2-01 3 72428456 72428456 T G RYBP Missense_Mutation p.K183T 0.16 deleterious(0.02) benign(0.261) TCGA-CV-A6K2-01 3 72428484 72428484 C G RYBP Missense_Mutation p.E174Q 0.24 tolerated(0.06) benign(0.427) TCGA-CV-A6K2-01 3 88104670 88104670 C G CGGBP1 Missense_Mutation p.D153H 0.16 deleterious(0.03) probably_damaging(0.987) TCGA-CV-A6K2-01 3 9426271 9426271 C T THUMPD3 Missense_Mutation p.L475F 0.17 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 3 9426356 9426356 G A THUMPD3 Nonsense_Mutation p.W503* 0.14 TCGA-CV-A6K2-01 4 107845356 107845356 C A DKK2 Nonsense_Mutation p.E179* 0.13 TCGA-CV-A6K2-01 4 110618874 110618874 C T CASP6 Missense_Mutation p.G45E 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 4 113483555 113483555 G A C4orf21 Silent p.L1557L 0.43 TCGA-CV-A6K2-01 4 122723915 122723915 C T EXOSC9 Missense_Mutation p.S83F 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 4 122854052 122854052 C A TRPC3 Nonsense_Mutation p.E121* 0.15 TCGA-CV-A6K2-01 4 126238058 126238058 C T FAT4 Silent p.I164I 0.28 TCGA-CV-A6K2-01 4 126329861 126329861 C G FAT4 Missense_Mutation p.F1944L 0.18 possibly_damaging(0.864) TCGA-CV-A6K2-01 4 148787899 148787899 C T ARHGAP10 Missense_Mutation p.H212Y 0.22 deleterious(0) benign(0.23) TCGA-CV-A6K2-01 4 151504655 151504655 C G MAB21L2 Silent p.V158V 0.17 TCGA-CV-A6K2-01 4 153601056 153601056 G A TMEM154 Silent p.F10F 0.09 TCGA-CV-A6K2-01 4 173150862 173150862 G C GALNTL6 Missense_Mutation p.R65T 0.24 tolerated(0.28) benign(0.004) TCGA-CV-A6K2-01 4 17609248 17609248 A G LAP3 3'UTR 0.13 TCGA-CV-A6K2-01 4 187527363 187527363 G C FAT1 Nonsense_Mutation p.S3404* 0.16 TCGA-CV-A6K2-01 4 187549761 187549761 G A FAT1 Nonsense_Mutation p.Q1494* 0.15 TCGA-CV-A6K2-01 4 187560919 187560919 G C FAT1 Nonsense_Mutation p.S1200* 0.11 TCGA-CV-A6K2-01 4 188924719 188924719 G T ZFP42 Missense_Mutation p.G253V 0.11 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 4 190873403 190873403 G C FRG1 Missense_Mutation p.D74H 0.21 deleterious(0) probably_damaging(0.985) TCGA-CV-A6K2-01 4 2746661 2746661 G C TNIP2 Silent p.L223L 0.08 TCGA-CV-A6K2-01 4 3101102 3101102 G A HTT Missense_Mutation p.C150Y 0.14 possibly_damaging(0.62) TCGA-CV-A6K2-01 4 3427265 3427265 G C RGS12 Missense_Mutation p.E1103D 0.13 tolerated(0.2) probably_damaging(0.992) TCGA-CV-A6K2-01 4 39105062 39105062 G C KLHL5 Missense_Mutation p.E532Q 0.18 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 4 39233871 39233871 C A WDR19 Missense_Mutation p.S744R 0.14 deleterious(0.01) possibly_damaging(0.771) TCGA-CV-A6K2-01 4 48384836 48384836 G A SLAIN2 Missense_Mutation p.E372K 0.24 tolerated(0.08) benign(0.098) TCGA-CV-A6K2-01 4 493170 493170 G A PIGG Missense_Mutation p.E16K 0.25 deleterious(0) possibly_damaging(0.625) TCGA-CV-A6K2-01 4 493173 493173 G A PIGG Missense_Mutation p.V17M 0.24 deleterious(0.01) possibly_damaging(0.872) TCGA-CV-A6K2-01 4 494265 494265 G A PIGG Missense_Mutation p.D79N 0.16 deleterious(0.01) probably_damaging(1) TCGA-CV-A6K2-01 4 74735496 74735496 C T CXCL1 Nonsense_Mutation p.Q71* 0.12 TCGA-CV-A6K2-01 4 74964368 74964368 G C CXCL2 Silent p.L86L 0.17 TCGA-CV-A6K2-01 4 77659919 77659919 C T SHROOM3 Missense_Mutation p.S198F 0.16 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K2-01 4 83765509 83765509 C G SEC31A Intron 0.06 TCGA-CV-A6K2-01 4 8588802 8588802 C T GPR78 Silent p.F268F 0.21 TCGA-CV-A6K2-01 4 89192178 89192178 C G PPM1K Intron 0.19 TCGA-CV-A6K2-01 4 90857709 90857709 C T MMRN1 Nonsense_Mutation p.Q960* 0.21 TCGA-CV-A6K2-01 5 118451886 118451886 G C DMXL1 Missense_Mutation p.E200Q 0.19 tolerated(0.16) benign(0.066) TCGA-CV-A6K2-01 5 1212485 1212485 C T SLC6A19 Silent p.I183I 0.22 TCGA-CV-A6K2-01 5 1214110 1214110 G A SLC6A19 Missense_Mutation p.A273T 0.17 tolerated(1) benign(0.262) TCGA-CV-A6K2-01 5 1219197 1219197 G A SLC6A19 Silent p.P451P 0.14 TCGA-CV-A6K2-01 5 127666307 127666307 C T FBN2 Missense_Mutation p.A1435T 0.20 tolerated(0.46) benign(0.05) TCGA-CV-A6K2-01 5 133295705 133295705 G A C5orf15 Missense_Mutation p.S49L 0.19 tolerated(0.14) benign(0.003) TCGA-CV-A6K2-01 5 137666860 137666860 C T CDC25C Missense_Mutation p.E4K 0.30 tolerated_low_confidence(0.13) probably_damaging(0.956) TCGA-CV-A6K2-01 5 13776601 13776601 G A DNAH5 Missense_Mutation p.S3107L 0.06 possibly_damaging(0.637) TCGA-CV-A6K2-01 5 140048500 140048500 C G WDR55 Missense_Mutation p.F195L 0.18 deleterious(0.05) possibly_damaging(0.78) TCGA-CV-A6K2-01 5 140590277 140590277 G A PCDHB12 Missense_Mutation p.A600T 0.06 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CV-A6K2-01 5 148388505 148388505 G A SH3TC2 Silent p.F1129F 0.20 TCGA-CV-A6K2-01 5 150410275 150410275 C G TNIP1 Nonstop_Mutation p.*637Sext*37 0.23 TCGA-CV-A6K2-01 5 156381553 156381553 C T TIMD4 Silent p.P91P 0.21 TCGA-CV-A6K2-01 5 156753273 156753273 G A CYFIP2 Missense_Mutation p.E667K 0.17 deleterious(0) probably_damaging(0.989) TCGA-CV-A6K2-01 5 157236727 157236727 C T CLINT1 Missense_Mutation p.G202S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6K2-01 5 16701587 16701587 C T MYO10 Missense_Mutation p.E973K 0.19 tolerated_low_confidence(0.85) benign(0.01) TCGA-CV-A6K2-01 5 168620509 168620509 G A SLIT3 Silent p.F129F 0.16 TCGA-CV-A6K2-01 5 171305024 171305024 G C FBXW11 Missense_Mutation p.S300C 0.26 deleterious(0) benign(0.438) TCGA-CV-A6K2-01 5 176070095 176070095 G A EIF4E1B Missense_Mutation p.E10K 0.29 tolerated_low_confidence(0.12) unknown(0) TCGA-CV-A6K2-01 5 176943934 176943934 C G DDX41 Missense_Mutation p.E5Q 0.23 tolerated_low_confidence(0.29) benign(0.004) TCGA-CV-A6K2-01 5 177171900 177171900 C G FAM153A Missense_Mutation p.E33Q 0.10 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-CV-A6K2-01 5 178460439 178460439 C G ZNF879 Nonsense_Mutation p.S497* 0.20 TCGA-CV-A6K2-01 5 32712159 32712159 C G NPR3 Missense_Mutation p.L93V 0.13 deleterious(0.03) benign(0.039) TCGA-CV-A6K2-01 5 41150077 41150077 C G C6 Missense_Mutation p.G781R 0.12 deleterious(0.04) possibly_damaging(0.903) TCGA-CV-A6K2-01 5 41907899 41907899 G C C5orf51 Missense_Mutation p.E54D 0.31 tolerated(0.78) benign(0.002) TCGA-CV-A6K2-01 5 43659398 43659398 C T NNT Silent p.I860I 0.25 TCGA-CV-A6K2-01 5 476783 476783 C G SLC9A3 Missense_Mutation p.E589Q 0.18 tolerated(0.08) possibly_damaging(0.597) TCGA-CV-A6K2-01 5 52366052 52366052 C G ITGA2 Missense_Mutation p.Q733E 0.19 tolerated(1) benign(0.004) TCGA-CV-A6K2-01 5 52371064 52371064 G A ITGA2 Missense_Mutation p.E919K 0.24 deleterious(0.04) benign(0.156) TCGA-CV-A6K2-01 5 53815204 53815204 C T SNX18 Silent p.L474L 0.17 TCGA-CV-A6K2-01 5 57754893 57754893 C T PLK2 Missense_Mutation p.M99I 0.12 deleterious(0.05) benign(0.192) TCGA-CV-A6K2-01 5 60448648 60448648 C G NDUFAF2 Missense_Mutation p.Q126E 0.21 tolerated(0.19) benign(0.006) TCGA-CV-A6K2-01 5 65073341 65073341 C G NLN Missense_Mutation p.L180V 0.20 deleterious(0.01) benign(0.407) TCGA-CV-A6K2-01 5 66492559 66492559 G C CD180 5'UTR 0.24 TCGA-CV-A6K2-01 5 72801160 72801160 G A BTF3 3'UTR 0.25 TCGA-CV-A6K2-01 5 74677016 74677016 C A COL4A3BP Missense_Mutation p.R671L 0.14 deleterious(0.03) benign(0.064) TCGA-CV-A6K2-01 5 80256689 80256689 C T RASGRF2 Silent p.F44F 0.26 TCGA-CV-A6K2-01 5 82816809 82816809 C T VCAN Missense_Mutation p.S895L 0.12 deleterious(0.01) probably_damaging(0.952) TCGA-CV-A6K2-01 5 864672 864672 G A BRD9 Missense_Mutation p.R569C 0.20 deleterious_low_confidence(0) benign(0.393) TCGA-CV-A6K2-01 6 109771177 109771177 C G MICAL1 Missense_Mutation p.E435Q 0.15 deleterious(0) probably_damaging(0.933) TCGA-CV-A6K2-01 6 109962782 109962782 C T AK9 Missense_Mutation p.R291K 0.28 tolerated(0.08) benign(0.003) TCGA-CV-A6K2-01 6 116443107 116443107 C G COL10A1 Missense_Mutation p.E58Q 0.16 tolerated(0.09) unknown(0) TCGA-CV-A6K2-01 6 118812932 118812932 C T CEP85L Missense_Mutation p.E455K 0.09 deleterious(0) possibly_damaging(0.876) TCGA-CV-A6K2-01 6 119345435 119345435 C G FAM184A Missense_Mutation p.E235Q 0.18 deleterious(0.01) probably_damaging(0.927) TCGA-CV-A6K2-01 6 12749886 12749886 G A PHACTR1 Silent p.A38A 0.12 TCGA-CV-A6K2-01 6 12749926 12749926 G A PHACTR1 Missense_Mutation p.E52K 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-CV-A6K2-01 6 127607815 127607815 G A RNF146 Silent p.R19R 0.17 TCGA-CV-A6K2-01 6 128150845 128150845 G A THEMIS Missense_Mutation p.S162L 0.14 tolerated(0.57) benign(0.341) TCGA-CV-A6K2-01 6 137323468 137323468 C G IL20RA Missense_Mutation p.D297H 0.18 deleterious(0.04) possibly_damaging(0.901) TCGA-CV-A6K2-01 6 144181686 144181686 G A LTV1 Missense_Mutation p.E307K 0.13 tolerated(0.78) benign(0.006) TCGA-CV-A6K2-01 6 150004897 150004897 G C LATS1 Nonsense_Mutation p.S443* 0.24 TCGA-CV-A6K2-01 6 150005093 150005093 G A LATS1 Silent p.L378L 0.23 TCGA-CV-A6K2-01 6 150114710 150114710 G A PCMT1 Missense_Mutation p.G166E 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 6 152485448 152485448 C T SYNE1 Silent p.L7880L 0.17 TCGA-CV-A6K2-01 6 152647475 152647475 C T SYNE1 Silent p.Q5083Q 0.15 TCGA-CV-A6K2-01 6 152688445 152688445 C G SYNE1 Missense_Mutation p.D3294H 0.18 probably_damaging(0.999) TCGA-CV-A6K2-01 6 160481615 160481615 A G IGF2R Missense_Mutation p.N1043S 0.16 deleterious(0.01) possibly_damaging(0.723) TCGA-CV-A6K2-01 6 160966550 160966550 C T LPA Missense_Mutation p.D1774N 0.12 deleterious(0.02) possibly_damaging(0.74) TCGA-CV-A6K2-01 6 161966456 161966456 C - PARK2 Intron 0.20 TCGA-CV-A6K2-01 6 165715188 165715188 C G C6orf118 Missense_Mutation p.G208A 0.16 tolerated(0.08) possibly_damaging(0.713) TCGA-CV-A6K2-01 6 168319465 168319465 G A MLLT4 Silent p.L913L 0.20 TCGA-CV-A6K2-01 6 170156486 170156486 C G ERMARD Missense_Mutation p.S123C 0.17 tolerated(0.1) benign(0.004) TCGA-CV-A6K2-01 6 24578429 24578429 C G KIAA0319 Missense_Mutation p.E472Q 0.15 tolerated(0.07) probably_damaging(0.962) TCGA-CV-A6K2-01 6 26446172 26446172 C T BTN3A3 Missense_Mutation p.S225F 0.17 tolerated(0.71) possibly_damaging(0.73) TCGA-CV-A6K2-01 6 26637713 26637713 C G ZNF322 Missense_Mutation p.D357H 0.16 deleterious(0) possibly_damaging(0.672) TCGA-CV-A6K2-01 6 29012229 29012229 C T OR2W1 Missense_Mutation p.G242R 0.16 deleterious(0.01) probably_damaging(1) TCGA-CV-A6K2-01 6 29910587 29910587 G T HLA-A Nonsense_Mutation p.E43* 0.24 TCGA-CV-A6K2-01 6 29976945 29976945 C T ZNRD1-AS1 RNA 0.12 TCGA-CV-A6K2-01 6 30879235 30879235 C T GTF2H4 Missense_Mutation p.L234F 0.22 deleterious(0) probably_damaging(0.996) TCGA-CV-A6K2-01 6 31322897 31322897 C G HLA-B Missense_Mutation p.R333S 0.14 deleterious_low_confidence(0.04) probably_damaging(0.972) TCGA-CV-A6K2-01 6 31541366 31541366 G A LTA Missense_Mutation p.A172T 0.22 deleterious(0) benign(0.032) TCGA-CV-A6K2-01 6 32157485 32157485 C T PBX2 Missense_Mutation p.E70K 0.24 deleterious(0.04) possibly_damaging(0.595) TCGA-CV-A6K2-01 6 33148774 33148774 G A COL11A2 Silent p.L310L 0.16 TCGA-CV-A6K2-01 6 33174212 33174212 C T HSD17B8 Missense_Mutation p.S252L 0.23 deleterious(0.01) possibly_damaging(0.58) TCGA-CV-A6K2-01 6 33423398 33423398 C T ZBTB9 Missense_Mutation p.S174L 0.18 deleterious(0.01) benign(0.122) TCGA-CV-A6K2-01 6 33633651 33633651 C A ITPR3 Silent p.V483V 0.11 TCGA-CV-A6K2-01 6 33744954 33744954 C G LEMD2 Missense_Mutation p.E407Q 0.19 tolerated(0.09) probably_damaging(0.993) TCGA-CV-A6K2-01 6 35987332 35987332 G C SLC26A8 Missense_Mutation p.I51M 0.09 deleterious(0.03) possibly_damaging(0.868) TCGA-CV-A6K2-01 6 38831661 38831661 C T DNAH8 Missense_Mutation p.S1891L 0.14 probably_damaging(1) TCGA-CV-A6K2-01 6 39554039 39554039 C T KIF6 Missense_Mutation p.D330N 0.16 deleterious(0) possibly_damaging(0.846) TCGA-CV-A6K2-01 6 43098305 43098305 G A PTK7 Missense_Mutation p.E248K 0.18 deleterious(0.01) possibly_damaging(0.861) TCGA-CV-A6K2-01 6 43220516 43220516 G C TTBK1 Missense_Mutation p.E50Q 0.19 probably_damaging(0.999) TCGA-CV-A6K2-01 6 43483629 43483629 G A YIPF3 Nonsense_Mutation p.Q96* 0.16 TCGA-CV-A6K2-01 6 49586894 49586894 T A RHAG Missense_Mutation p.K113N 0.22 tolerated(0.11) benign(0.033) TCGA-CV-A6K2-01 6 51613356 51613356 G A PKHD1 Silent p.L3020L 0.26 TCGA-CV-A6K2-01 6 55216296 55216296 C T GFRAL Missense_Mutation p.H206Y 0.21 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 6 71570016 71570016 C G SMAP1 Silent p.L461L 0.18 TCGA-CV-A6K2-01 6 74325154 74325154 G A SLC17A5 Missense_Mutation p.S332L 0.21 deleterious(0) benign(0.155) TCGA-CV-A6K2-01 6 87966217 87966217 C G ZNF292 Nonsense_Mutation p.S957* 0.05 TCGA-CV-A6K2-01 6 90605134 90605134 C G GJA10 Missense_Mutation p.S316C 0.16 tolerated(0.86) benign(0.001) TCGA-CV-A6K2-01 7 100028728 100028728 C T MEPCE Missense_Mutation p.R363C 0.08 deleterious(0) possibly_damaging(0.725) TCGA-CV-A6K2-01 7 100190691 100190691 G A FBXO24 Intron 0.29 TCGA-CV-A6K2-01 7 100284283 100284283 G C GIGYF1 Missense_Mutation p.S228C 0.19 tolerated(0.23) unknown(0) TCGA-CV-A6K2-01 7 100684409 100684409 G A MUC17 Missense_Mutation p.E3238K 0.18 possibly_damaging(0.829) TCGA-CV-A6K2-01 7 103243902 103243902 G T RELN Missense_Mutation p.P1061Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CV-A6K2-01 7 104753026 104753027 - T KMT2E Frame_Shift_Ins p.L1610Ffs*259 0.16 TCGA-CV-A6K2-01 7 107314639 107314639 G C SLC26A4 Missense_Mutation p.G149A 0.20 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 7 128588064 128588064 C T IRF5 Nonsense_Mutation p.Q357* 0.14 TCGA-CV-A6K2-01 7 129110548 129110548 G A STRIP2 Missense_Mutation p.E646K 0.10 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 7 130080777 130080777 C G CEP41 Missense_Mutation p.E11Q 0.18 tolerated(0.35) benign(0.005) TCGA-CV-A6K2-01 7 134262506 134262506 C G AKR1B15 Missense_Mutation p.F320L 0.07 tolerated(0.7) benign(0.035) TCGA-CV-A6K2-01 7 138270646 138270646 G A TRIM24 3'UTR 0.15 TCGA-CV-A6K2-01 7 138874099 138874099 G C TTC26 Missense_Mutation p.R529T 0.12 deleterious(0.05) benign(0.424) TCGA-CV-A6K2-01 7 142013247 142013247 G T TRBV4-1 Missense_Mutation p.M34I 0.13 tolerated(0.18) benign(0.181) TCGA-CV-A6K2-01 7 148876662 148876662 C A ZNF398 Silent p.P566P 0.07 TCGA-CV-A6K2-01 7 150752435 150752435 G A CDK5 Missense_Mutation p.P170L 0.30 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 7 151805335 151805335 G C GALNT11 Missense_Mutation p.E309Q 0.19 tolerated(0.24) possibly_damaging(0.673) TCGA-CV-A6K2-01 7 151879195 151879195 C T KMT2C Missense_Mutation p.R1917K 0.16 probably_damaging(0.992) TCGA-CV-A6K2-01 7 22999885 22999885 C G FAM126A Missense_Mutation p.W327C 0.17 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 7 24705289 24705289 G C MPP6 Missense_Mutation p.R289T 0.44 tolerated(0.11) benign(0.269) TCGA-CV-A6K2-01 7 26240296 26240296 G A HNRNPA2B1 5'UTR 0.24 TCGA-CV-A6K2-01 7 28857687 28857687 G C CREB5 Splice_Site p.X419_splice 0.32 TCGA-CV-A6K2-01 7 34125424 34125424 C T BMPER Missense_Mutation p.L489F 0.21 deleterious(0.04) benign(0.268) TCGA-CV-A6K2-01 7 3991489 3991489 G C SDK1 Missense_Mutation p.E363Q 0.30 tolerated(0.16) possibly_damaging(0.529) TCGA-CV-A6K2-01 7 43546766 43546766 C G HECW1 Missense_Mutation p.S1221C 0.17 deleterious(0) possibly_damaging(0.827) TCGA-CV-A6K2-01 7 44178534 44178534 C T MYL7 Missense_Mutation p.E172K 0.16 tolerated(0.21) possibly_damaging(0.843) TCGA-CV-A6K2-01 7 47976510 47976510 C T PKD1L1 Missense_Mutation p.E111K 0.20 tolerated_low_confidence(1) benign(0) TCGA-CV-A6K2-01 7 48034039 48034039 G A SUN3 Missense_Mutation p.S245F 0.19 deleterious(0.01) benign(0.25) TCGA-CV-A6K2-01 7 57188601 57188601 C G ZNF479 Missense_Mutation p.R174T 0.14 tolerated(0.07) possibly_damaging(0.843) TCGA-CV-A6K2-01 7 64452834 64452834 C T ERV3-1 Missense_Mutation p.D191N 0.18 tolerated(0.67) benign(0.042) TCGA-CV-A6K2-01 7 73254880 73254880 C A WBSCR27 Splice_Site p.X85_splice 0.21 TCGA-CV-A6K2-01 7 73609192 73609192 C T EIF4H Silent p.F197F 0.24 TCGA-CV-A6K2-01 7 76254991 76254991 C T POMZP3 Silent p.Q25Q 0.23 TCGA-CV-A6K2-01 7 76871137 76871137 G C CCDC146 Missense_Mutation p.M123I 0.13 tolerated(0.92) benign(0.025) TCGA-CV-A6K2-01 7 77210788 77210788 G A PTPN12 Missense_Mutation p.D85N 0.23 deleterious(0.02) benign(0.08) TCGA-CV-A6K2-01 7 86415581 86415581 C A GRM3 Missense_Mutation p.A158E 0.16 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 7 92732104 92732104 G A SAMD9 Silent p.L1103L 0.16 TCGA-CV-A6K2-01 7 96639321 96639321 C G DLX6 Missense_Mutation p.P282A 0.16 tolerated(0.63) benign(0.041) TCGA-CV-A6K2-01 7 99091605 99091605 C T ZNF394 Silent p.E411E 0.15 TCGA-CV-A6K2-01 7 99447259 99447259 G A CYP3A43 Silent p.L204L 0.19 TCGA-CV-A6K2-01 7 99521203 99521203 C T GJC3 Missense_Mutation p.E269K 0.15 tolerated_low_confidence(0.09) possibly_damaging(0.636) TCGA-CV-A6K2-01 8 105361016 105361016 G C DCSTAMP Missense_Mutation p.R79P 0.14 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 8 110457229 110457229 G C PKHD1L1 Missense_Mutation p.E1711Q 0.19 tolerated(0.5) possibly_damaging(0.493) TCGA-CV-A6K2-01 8 110566091 110566091 C T EBAG9 Intron 0.27 TCGA-CV-A6K2-01 8 126370029 126370029 G C NSMCE2 Missense_Mutation p.E199Q 0.20 tolerated(1) benign(0.268) TCGA-CV-A6K2-01 8 142204271 142204271 G C DENND3 Missense_Mutation p.R1179T 0.23 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 8 144895848 144895848 C T SCRIB Silent p.L135L 0.16 TCGA-CV-A6K2-01 8 144992235 144992235 G A PLEC Silent p.I4055I 0.22 TCGA-CV-A6K2-01 8 21608407 21608407 C T GFRA2 Missense_Mutation p.D163N 0.28 tolerated(0.21) benign(0.356) TCGA-CV-A6K2-01 8 23112769 23112769 G A CHMP7 Missense_Mutation p.E161K 0.20 tolerated(0.14) benign(0.026) TCGA-CV-A6K2-01 8 27634270 27634270 C T ESCO2 Nonsense_Mutation p.Q149* 0.24 TCGA-CV-A6K2-01 8 27779710 27779710 C T SCARA5 Silent p.V98V 0.09 TCGA-CV-A6K2-01 8 3266975 3266975 G A CSMD1 Nonsense_Mutation p.Q572* 0.25 TCGA-CV-A6K2-01 8 38148153 38148153 C A WHSC1L1 Silent p.L986L 0.14 TCGA-CV-A6K2-01 8 42046580 42046580 C G PLAT Missense_Mutation p.R42T 0.19 tolerated(0.36) benign(0.008) TCGA-CV-A6K2-01 8 52320655 52320655 C A PXDNL Missense_Mutation p.D1177Y 0.19 deleterious(0) possibly_damaging(0.903) TCGA-CV-A6K2-01 8 8559962 8559962 C G CLDN23 Silent p.L18L 0.20 TCGA-CV-A6K2-01 8 87464814 87464814 G A WWP1 Missense_Mutation p.R767Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-CV-A6K2-01 8 91643862 91643862 G C TMEM64 Missense_Mutation p.S290C 0.14 tolerated(0.13) benign(0.263) TCGA-CV-A6K2-01 8 91643929 91643929 C T TMEM64 Missense_Mutation p.D268N 0.15 tolerated(0.25) benign(0.179) TCGA-CV-A6K2-01 8 9413844 9413844 C T TNKS Missense_Mutation p.S132F 0.18 deleterious_low_confidence(0) unknown(0) TCGA-CV-A6K2-01 8 95390474 95390474 C T RAD54B Missense_Mutation p.E817K 0.27 deleterious(0.01) possibly_damaging(0.677) TCGA-CV-A6K2-01 8 95658449 95658449 C T ESRP1 Silent p.F143F 0.21 TCGA-CV-A6K2-01 9 100080853 100080853 C T CCDC180 Silent p.L400L 0.20 TCGA-CV-A6K2-01 9 100850020 100850020 C T TRIM14 Missense_Mutation p.R354H 0.20 deleterious(0) possibly_damaging(0.49) TCGA-CV-A6K2-01 9 100888996 100888996 C G CORO2A Missense_Mutation p.L427F 0.20 tolerated(0.25) benign(0.001) TCGA-CV-A6K2-01 9 103338962 103338962 C T TMEFF1 3'UTR 0.35 TCGA-CV-A6K2-01 9 111976099 111976099 C G EPB41L4B Splice_Site p.X545_splice 0.27 TCGA-CV-A6K2-01 9 113194255 113194255 C G SVEP1 Missense_Mutation p.D1765H 0.14 possibly_damaging(0.555) TCGA-CV-A6K2-01 9 113265335 113265335 G T SVEP1 Missense_Mutation p.P489Q 0.25 benign(0.139) TCGA-CV-A6K2-01 9 114090189 114090189 G A OR2K2 Silent p.H175H 0.20 TCGA-CV-A6K2-01 9 114134106 114134106 G A KIAA0368 Missense_Mutation p.S1689F 0.13 deleterious(0) possibly_damaging(0.712) TCGA-CV-A6K2-01 9 115171278 115171278 G A HSDL2 Silent p.V124V 0.30 TCGA-CV-A6K2-01 9 115648826 115648826 C A SLC46A2 Missense_Mutation p.K428N 0.14 tolerated(0.1) benign(0.004) TCGA-CV-A6K2-01 9 116353612 116353612 G A RGS3 Splice_Site p.X1006_splice 0.12 TCGA-CV-A6K2-01 9 117848984 117848984 C T TNC Silent p.G342G 0.12 TCGA-CV-A6K2-01 9 120474818 120474818 C G TLR4 Missense_Mutation p.L138V 0.21 tolerated(0.07) benign(0.13) TCGA-CV-A6K2-01 9 128064368 128064368 G A GAPVD1 Missense_Mutation p.E98K 0.13 deleterious(0.01) benign(0.439) TCGA-CV-A6K2-01 9 128064373 128064373 C G GAPVD1 Missense_Mutation p.F99L 0.12 tolerated(0.18) benign(0.083) TCGA-CV-A6K2-01 9 130479958 130479958 C T TTC16 Silent p.F111F 0.18 TCGA-CV-A6K2-01 9 131395129 131395129 C G SPTAN1 Missense_Mutation p.I2401M 0.16 deleterious(0) benign(0.04) TCGA-CV-A6K2-01 9 131882881 131882881 C T PPP2R4 Missense_Mutation p.R41C 0.15 deleterious(0.01) possibly_damaging(0.646) TCGA-CV-A6K2-01 9 133579256 133579256 C T EXOSC2 3'UTR 0.35 TCGA-CV-A6K2-01 9 136323072 136323072 G A ADAMTS13 Silent p.V1311V 0.20 TCGA-CV-A6K2-01 9 139092511 139092511 G C LHX3 Silent p.L61L 0.24 TCGA-CV-A6K2-01 9 139115958 139115958 C T QSOX2 Missense_Mutation p.G160E 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-CV-A6K2-01 9 140482182 140482182 G A ZMYND19 Missense_Mutation p.H69Y 0.17 deleterious(0) possibly_damaging(0.708) TCGA-CV-A6K2-01 9 15591402 15591402 G C CCDC171 Missense_Mutation p.E131Q 0.17 deleterious(0) possibly_damaging(0.878) TCGA-CV-A6K2-01 9 15777662 15777662 C G CCDC171 Silent p.L912L 0.14 TCGA-CV-A6K2-01 9 17793364 17793364 G A SH3GL2 Splice_Site p.X243_splice 0.24 TCGA-CV-A6K2-01 9 19060161 19060161 C G HAUS6 Missense_Mutation p.E564Q 0.40 deleterious(0.04) benign(0.187) TCGA-CV-A6K2-01 9 32631851 32631851 G A TAF1L Missense_Mutation p.R1243W 0.16 deleterious(0) probably_damaging(0.997) TCGA-CV-A6K2-01 9 34385641 34385641 C T C9orf24 Missense_Mutation p.E92K 0.25 tolerated(0.42) benign(0.146) TCGA-CV-A6K2-01 9 34646747 34646747 G C GALT Missense_Mutation p.E16Q 0.23 deleterious_low_confidence(0.04) benign(0.287) TCGA-CV-A6K2-01 9 35706339 35706339 C G TLN1 Missense_Mutation p.E1739Q 0.19 tolerated(0.1) benign(0.154) TCGA-CV-A6K2-01 9 39073778 39073778 G T CNTNAP3 3'UTR 0.08 TCGA-CV-A6K2-01 9 396931 396931 G A DOCK8 Silent p.Q1039Q 0.23 TCGA-CV-A6K2-01 9 4844556 4844556 G A RCL1 Missense_Mutation p.E248K 0.22 deleterious(0) probably_damaging(0.984) TCGA-CV-A6K2-01 9 71628433 71628433 C T PRKACG Silent p.V192V 0.08 TCGA-CV-A6K2-01 9 72071254 72071254 G A APBA1 Missense_Mutation p.S566F 0.03 deleterious(0) possibly_damaging(0.878) TCGA-CV-A6K2-01 9 73151096 73151096 C T TRPM3 Missense_Mutation p.E1633K 0.17 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CV-A6K2-01 9 79441526 79441526 C A PRUNE2 Missense_Mutation p.V211F 0.18 deleterious(0) probably_damaging(0.961) TCGA-CV-A6K2-01 9 84230975 84230975 C T TLE1 Silent p.K280K 0.17 TCGA-CV-A6K2-01 9 86356884 86356884 C G GKAP1 Missense_Mutation p.E346Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-CV-A6K2-01 9 86616414 86616414 A G RMI1 Silent p.G171G 0.19 TCGA-CV-A6K2-01 9 90585480 90585480 C T CDK20 Intron 0.26 TCGA-CV-A6K2-01 9 95043133 95043133 C A IARS Nonsense_Mutation p.E214* 0.10 TCGA-CV-A6K2-01 X 111025357 111025357 C T TRPC5 Missense_Mutation p.D636N 0.47 deleterious(0) probably_damaging(1) TCGA-CV-A6K2-01 X 134156231 134156231 C G FAM127C Missense_Mutation p.E87Q 0.42 tolerated(0.2) benign(0.002) TCGA-CV-A6K2-01 X 135496377 135496377 C G GPR112 Missense_Mutation p.I3032M 0.33 deleterious(0.03) benign(0.073) TCGA-CV-A6K2-01 X 139865845 139865845 C G CDR1 Missense_Mutation p.K229N 0.12 deleterious(0.01) possibly_damaging(0.607) TCGA-CV-A6K2-01 X 153665646 153665646 G A GDI1 Splice_Site p.X15_splice 0.35 TCGA-CV-A6K2-01 X 18622107 18622107 C T CDKL5 Missense_Mutation p.R355W 0.36 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-CV-A6K2-01 X 21874967 21874967 C G YY2 Missense_Mutation p.S122C 0.38 deleterious(0.01) benign(0.093) TCGA-CV-A6K2-01 X 37028873 37028873 C G FAM47C Missense_Mutation p.S797C 0.07 deleterious(0) probably_damaging(0.995) TCGA-CV-A6K2-01 X 46884229 46884229 G A JADE3 Missense_Mutation p.E130K 0.10 tolerated(0.12) probably_damaging(0.973) TCGA-CV-A6K2-01 X 53570870 53570870 C T HUWE1 Missense_Mutation p.E3771K 0.36 unknown(0) TCGA-CV-A6K2-01 X 65253533 65253533 G A VSIG4 Silent p.V65V 0.42 TCGA-CV-A6K2-01 X 79281108 79281108 C G TBX22 Silent p.V155V 0.35 TCGA-CX-7082-01 10 1038576 1038576 C G GTPBP4 Missense_Mutation p.L66V 0.38 tolerated(0.09) benign(0.142) TCGA-CX-7082-01 10 112363045 112363045 T A SMC3 Missense_Mutation p.N1193K 0.34 deleterious(0) probably_damaging(0.974) TCGA-CX-7082-01 10 72610941 72610941 A T SGPL1 Missense_Mutation p.R79W 0.38 deleterious(0) probably_damaging(0.997) TCGA-CX-7082-01 11 103780424 103780424 A T PDGFD Nonstop_Mutation p.*371Kext*16 0.14 TCGA-CX-7082-01 11 124618415 124618415 C G VSIG2 Missense_Mutation p.R241P 0.65 tolerated(0.08) probably_damaging(0.943) TCGA-CX-7082-01 11 125479465 125479465 C T STT3A Silent p.L366L 0.55 TCGA-CX-7082-01 11 57995517 57995517 G A OR10Q1 Silent p.S277S 0.32 TCGA-CX-7082-01 11 64116864 64116864 G T CCDC88B Missense_Mutation p.R893L 0.29 tolerated(0.11) benign(0.003) TCGA-CX-7082-01 11 77411780 77411780 A C RSF1 Missense_Mutation p.S832A 0.59 tolerated(0.12) benign(0.002) TCGA-CX-7082-01 11 95825060 95825060 C G MAML2 Missense_Mutation p.R712T 0.59 unknown(0) TCGA-CX-7082-01 12 11034937 11034937 C T PRH1 Missense_Mutation p.G133D 0.25 deleterious_low_confidence(0.04) unknown(0) TCGA-CX-7082-01 12 124270320 124270320 G A DNAH10 Missense_Mutation p.V359M 0.34 possibly_damaging(0.707) TCGA-CX-7082-01 12 52699946 52699946 A G KRT86 Missense_Mutation p.K377E 0.29 deleterious(0) possibly_damaging(0.842) TCGA-CX-7082-01 12 57457026 57457026 G A TMEM194A Silent p.L286L 0.39 TCGA-CX-7082-01 12 58124681 58124681 T G AGAP2 Missense_Mutation p.K734T 0.30 deleterious(0) probably_damaging(0.996) TCGA-CX-7082-01 12 64828639 64828639 C G XPOT Missense_Mutation p.L879V 0.38 tolerated(0.16) benign(0.002) TCGA-CX-7082-01 12 66932903 66932903 C A GRIP1 Nonsense_Mutation p.G125* 0.33 TCGA-CX-7082-01 12 70983891 70983891 C A PTPRB Missense_Mutation p.V635L 0.38 tolerated(0.4) benign(0.001) TCGA-CX-7082-01 12 9307319 9307319 G T PZP Missense_Mutation p.L1223I 0.43 deleterious(0) probably_damaging(0.992) TCGA-CX-7082-01 12 95867869 95867869 A G METAP2 5'UTR 0.24 TCGA-CX-7082-01 13 20221396 20221396 G A MPHOSPH8 Missense_Mutation p.E395K 0.09 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-CX-7082-01 13 53624472 53624472 G A OLFM4 Missense_Mutation p.A367T 0.41 deleterious(0) probably_damaging(0.999) TCGA-CX-7082-01 14 23447583 23447583 G A AJUBA Missense_Mutation p.H360Y 0.75 deleterious(0) possibly_damaging(0.728) TCGA-CX-7082-01 14 47351355 47351355 T A MDGA2 Missense_Mutation p.T770S 0.50 tolerated(0.34) benign(0.138) TCGA-CX-7082-01 14 50053078 50053078 G A RPS29 5'UTR 0.84 TCGA-CX-7082-01 15 40295429 40295429 C T EIF2AK4 Nonsense_Mutation p.R1091* 0.30 TCGA-CX-7082-01 16 15198558 15198558 G A RP11-1186N24.5 3'Flank 0.23 TCGA-CX-7082-01 16 48174830 48174830 G A ABCC12 Intron 0.24 TCGA-CX-7082-01 16 67865170 67865170 C T CENPT Missense_Mutation p.D218N 0.54 tolerated(0.08) benign(0.115) TCGA-CX-7082-01 16 88951552 88951552 G A CBFA2T3 Missense_Mutation p.P340L 0.24 tolerated(0.06) benign(0.028) TCGA-CX-7082-01 17 1028581 1028581 G A ABR Silent p.S61S 0.31 TCGA-CX-7082-01 17 19583338 19583338 T G SLC47A2 Silent p.S505S 0.35 TCGA-CX-7082-01 17 47656378 47656378 C T NXPH3 Nonsense_Mutation p.Q159* 0.06 TCGA-CX-7082-01 17 6941614 6941614 C T SLC16A13 Missense_Mutation p.L163F 0.37 deleterious(0.01) possibly_damaging(0.529) TCGA-CX-7082-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.65 TCGA-CX-7082-01 17 79803513 79803513 G T P4HB Missense_Mutation p.T428N 0.23 deleterious(0) probably_damaging(0.998) TCGA-CX-7082-01 18 23632698 23632698 G A SS18 Missense_Mutation p.S166F 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.556) TCGA-CX-7082-01 18 67843922 67843922 G A RTTN Missense_Mutation p.P489S 0.31 deleterious(0) probably_damaging(1) TCGA-CX-7082-01 19 16514739 16514739 G C EPS15L1 Missense_Mutation p.I477M 0.38 deleterious(0) probably_damaging(0.952) TCGA-CX-7082-01 19 20728437 20728437 T - ZNF737 Frame_Shift_Del p.H191Lfs*59 0.18 TCGA-CX-7082-01 19 29698472 29698472 T C UQCRFS1 Missense_Mutation p.M270V 0.33 tolerated(0.6) benign(0) TCGA-CX-7082-01 19 32844889 32844889 A G ZNF507 Missense_Mutation p.I385V 0.40 deleterious(0) possibly_damaging(0.456) TCGA-CX-7082-01 19 37368865 37368948 CCTTTGGTAGTGGCTCAAAACTTATCCAACACCAGCTAATCCATACTGGTGAAAGACCCTATGAATGTAAAGAATGTGGAAAGT - ZNF345 In_Frame_Del p.G380_F407del 0.16 TCGA-CX-7082-01 19 37368944 37368944 A G ZNF345 Silent p.G404G 0.17 TCGA-CX-7082-01 19 37368948 37368948 T G ZNF345 Missense_Mutation p.S406A 0.20 tolerated(1) benign(0.001) TCGA-CX-7082-01 19 44636171 44636171 C T ZNF225 Silent p.A468A 0.43 TCGA-CX-7082-01 19 44777755 44777755 T C ZNF233 Silent p.Y314Y 0.44 TCGA-CX-7082-01 19 9046408 9046408 C T MUC16 Silent p.E11741E 0.46 TCGA-CX-7082-01 1 103345461 103345461 T A COL11A1 Missense_Mutation p.L1684F 0.30 unknown(0) TCGA-CX-7082-01 1 117484584 117484584 C T PTGFRN Silent p.N99N 0.16 TCGA-CX-7082-01 1 12081875 12081875 C T MIIP Missense_Mutation p.S31L 0.15 tolerated(0.14) benign(0.2) TCGA-CX-7082-01 1 147096739 147096739 C T BCL9 Silent p.N1420N 0.51 TCGA-CX-7082-01 1 151298715 151298715 G C PI4KB 5'UTR 0.78 TCGA-CX-7082-01 1 167973999 167973999 A T DCAF6 Missense_Mutation p.E449V 0.74 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-CX-7082-01 1 173839375 173839375 T C ZBTB37 Silent p.G4G 0.41 TCGA-CX-7082-01 1 220206926 220206926 G C EPRS Silent p.L102L 0.20 TCGA-CX-7082-01 1 22030033 22030033 T A USP48 Missense_Mutation p.Y865F 0.34 tolerated(0.09) benign(0.254) TCGA-CX-7082-01 1 223179194 223179194 A G DISP1 Silent p.R1485R 0.17 TCGA-CX-7082-01 1 235860530 235860530 C T LYST Missense_Mutation p.V3473M 0.81 deleterious(0) probably_damaging(0.996) TCGA-CX-7082-01 1 53676319 53676319 C - CPT2 Frame_Shift_Del p.L325Sfs*3 0.22 TCGA-CX-7082-01 1 62907261 62907261 T C USP1 Silent p.Y91Y 0.44 TCGA-CX-7082-01 1 866467 866467 C T SAMD11 Silent p.C101C 0.41 TCGA-CX-7082-01 1 95710106 95710106 C G RWDD3 Missense_Mutation p.T142S 0.15 tolerated(0.1) benign(0.206) TCGA-CX-7082-01 20 23401954 23401954 C T NAPB Missense_Mutation p.R29Q 0.36 deleterious(0.02) benign(0.052) TCGA-CX-7082-01 21 31692054 31692054 A G KRTAP26-1 Silent p.A100A 0.25 TCGA-CX-7082-01 22 21138419 21138420 - G SERPIND1 Frame_Shift_Ins p.I353Hfs*67 0.31 TCGA-CX-7082-01 22 31330915 31330915 G C MORC2 Silent p.V620V 0.33 TCGA-CX-7082-01 22 42191530 42191531 - T MEI1 Frame_Shift_Ins p.G1218Wfs*14 0.29 TCGA-CX-7082-01 22 50716358 50716358 A G PLXNB2 Missense_Mutation p.F1658L 0.39 deleterious(0) probably_damaging(0.998) TCGA-CX-7082-01 22 51117039 51117039 C T SHANK3 Silent p.Y122Y 0.31 TCGA-CX-7082-01 2 110015122 110015122 T G SH3RF3 Missense_Mutation p.L341R 0.30 tolerated(0.17) benign(0.372) TCGA-CX-7082-01 2 176794733 176794733 C A KIAA1715 Missense_Mutation p.D417Y 0.27 tolerated_low_confidence(0.09) benign(0.309) TCGA-CX-7082-01 2 176794780 176794780 G A KIAA1715 Missense_Mutation p.S401L 0.36 tolerated(0.08) benign(0.002) TCGA-CX-7082-01 2 18112633 18112633 C T KCNS3 Missense_Mutation p.R120C 0.16 deleterious(0) possibly_damaging(0.794) TCGA-CX-7082-01 2 193049123 193049123 C T TMEFF2 Silent p.Q123Q 0.36 TCGA-CX-7082-01 2 225653885 225653885 T A DOCK10 Missense_Mutation p.M1772L 0.21 tolerated(0.89) benign(0.001) TCGA-CX-7082-01 2 29456487 29456487 C A ALK Missense_Mutation p.V811L 0.37 tolerated(0.31) possibly_damaging(0.896) TCGA-CX-7082-01 2 3691423 3691423 G T COLEC11 Silent p.L191L 0.42 TCGA-CX-7082-01 2 74802648 74802648 T A M1AP Nonsense_Mutation p.R331* 0.37 TCGA-CX-7082-01 2 80529787 80529787 G T LRRTM1 Silent p.P386P 0.33 TCGA-CX-7082-01 3 113664258 113664258 T G GRAMD1C Missense_Mutation p.L641R 0.33 deleterious(0) probably_damaging(0.913) TCGA-CX-7082-01 3 124211627 124211627 T A KALRN Missense_Mutation p.I1575N 0.32 deleterious(0) probably_damaging(0.993) TCGA-CX-7082-01 3 125271261 125271261 A G OSBPL11 Missense_Mutation p.F473S 0.33 tolerated(0.48) benign(0) TCGA-CX-7082-01 3 146251261 146251261 G C PLSCR1 Missense_Mutation p.F30L 0.20 tolerated(0.25) benign(0.002) TCGA-CX-7082-01 3 148458977 148458977 T C AGTR1 Missense_Mutation p.V52A 0.21 deleterious(0) probably_damaging(0.977) TCGA-CX-7082-01 3 169824653 169824653 G T PHC3 Nonsense_Mutation p.S812* 0.09 TCGA-CX-7082-01 3 178921501 178921501 G C PIK3CA Missense_Mutation p.W328S 0.08 deleterious(0) probably_damaging(0.953) TCGA-CX-7082-01 3 186395211 186395211 G T HRG Nonsense_Mutation p.E373* 0.74 TCGA-CX-7082-01 3 25832618 25832618 C A OXSM Missense_Mutation p.P36Q 0.58 tolerated(0.06) benign(0.265) TCGA-CX-7082-01 3 53854579 53854579 G A CHDH Missense_Mutation p.R348C 0.20 deleterious(0) benign(0.302) TCGA-CX-7082-01 4 128951815 128951815 A T C4orf29 Missense_Mutation p.Q410L 0.41 deleterious(0.01) possibly_damaging(0.631) TCGA-CX-7082-01 4 184368144 184368144 A G CDKN2AIP Missense_Mutation p.K436R 0.38 tolerated(1) benign(0.031) TCGA-CX-7082-01 4 187540589 187540589 T C FAT1 Missense_Mutation p.N2384S 0.30 possibly_damaging(0.716) TCGA-CX-7082-01 4 76442145 76442145 C T THAP6 Missense_Mutation p.P82S 0.15 tolerated(0.07) possibly_damaging(0.907) TCGA-CX-7082-01 5 1244337 1244337 T C SLC6A18 Missense_Mutation p.C449R 0.40 deleterious(0) probably_damaging(0.949) TCGA-CX-7082-01 5 140237238 140237238 C T PCDHA10 Silent p.S535S 0.58 TCGA-CX-7082-01 5 140242781 140242781 G A AC005609.1 Silent p.S65S 0.61 TCGA-CX-7082-01 5 140502789 140502789 A T PCDHB4 Silent p.V403V 0.62 TCGA-CX-7082-01 5 43506112 43506112 G C C5orf34 Missense_Mutation p.L224V 0.35 tolerated(0.9) benign(0.053) TCGA-CX-7082-01 5 71756463 71756463 C G ZNF366 Silent p.G287G 0.31 TCGA-CX-7082-01 6 107031256 107031256 T C RTN4IP1 Missense_Mutation p.M344V 0.41 tolerated(1) benign(0.005) TCGA-CX-7082-01 6 31785354 31785354 C T HSPA1A Silent p.I607I 0.27 TCGA-CX-7082-01 7 117364750 117364750 C G CTTNBP2 Missense_Mutation p.S1433T 0.18 tolerated(0.35) benign(0.097) TCGA-CX-7082-01 7 150771897 150771897 A G SLC4A2 Missense_Mutation p.I1006V 0.38 deleterious(0) probably_damaging(0.994) TCGA-CX-7082-01 7 20198105 20198105 C T MACC1 Missense_Mutation p.D627N 0.29 tolerated(0.14) benign(0.014) TCGA-CX-7082-01 7 64166764 64166764 A G ZNF107 Missense_Mutation p.K28E 0.52 tolerated(0.23) benign(0.099) TCGA-CX-7082-01 7 98638089 98638089 A G SMURF1 Missense_Mutation p.F514L 0.53 tolerated(0.15) probably_damaging(0.96) TCGA-CX-7082-01 7 98645385 98645385 G A SMURF1 Silent p.V384V 0.56 TCGA-CX-7082-01 8 110100298 110100298 A T TRHR Missense_Mutation p.N186I 0.21 deleterious(0.01) benign(0.392) TCGA-CX-7082-01 8 120809913 120809913 C G TAF2 Missense_Mutation p.M322I 0.32 deleterious(0.02) benign(0.444) TCGA-CX-7082-01 8 133882060 133882060 G A TG Missense_Mutation p.R88Q 0.35 tolerated(0.33) benign(0.256) TCGA-CX-7082-01 8 95897779 95897779 T C CCNE2 Missense_Mutation p.Y203C 0.45 deleterious(0.03) probably_damaging(0.965) TCGA-CX-7082-01 9 101817638 101817638 G A COL15A1 Missense_Mutation p.G1059E 0.29 deleterious(0) probably_damaging(0.998) TCGA-CX-7082-01 9 125486501 125486501 T C OR1L4 Missense_Mutation p.I78T 0.25 tolerated(1) benign(0.004) TCGA-CX-7082-01 9 135771440 135771440 G A TSC1 3'UTR 0.39 TCGA-CX-7082-01 9 136227265 136227266 GA - SURF2 Frame_Shift_Del p.E216Dfs*37 0.25 TCGA-CX-7082-01 9 136338606 136338606 G A SLC2A6 Nonsense_Mutation p.Q385* 0.29 TCGA-CX-7082-01 9 136338607 136338607 C T SLC2A6 Silent p.A384A 0.29 TCGA-CX-7082-01 9 34655639 34655639 G A IL11RA Silent p.L46L 0.45 TCGA-CX-7082-01 9 84532706 84532706 T A SPATA31D5P RNA 0.23 TCGA-CX-7082-01 X 106358744 106358744 G C RBM41 Missense_Mutation p.L121V 0.70 tolerated(0.08) probably_damaging(0.996) TCGA-CX-7082-01 X 154736595 154736595 T C TMLHE Missense_Mutation p.N320S 0.82 tolerated(0.23) benign(0.145) TCGA-CX-7085-01 10 105203734 105203734 C G PDCD11 Missense_Mutation p.I1729M 0.09 deleterious(0.02) possibly_damaging(0.739) TCGA-CX-7085-01 10 114169340 114169340 C T ACSL5 Missense_Mutation p.T259I 0.12 tolerated(0.31) benign(0.059) TCGA-CX-7085-01 10 121207689 121207689 G A GRK5 Missense_Mutation p.E441K 0.15 tolerated(0.05) benign(0.014) TCGA-CX-7085-01 10 18827254 18827254 C G CACNB2 Nonsense_Mutation p.S483* 0.03 TCGA-CX-7085-01 10 28229719 28229719 A T ARMC4 Missense_Mutation p.C587S 0.09 tolerated(0.05) benign(0.285) TCGA-CX-7085-01 10 33502550 33502550 C G NRP1 Missense_Mutation p.E460Q 0.07 tolerated(0.12) probably_damaging(0.999) TCGA-CX-7085-01 10 62631978 62631978 G C RHOBTB1 Missense_Mutation p.S629C 0.04 deleterious(0.03) possibly_damaging(0.56) TCGA-CX-7085-01 10 70156542 70156542 G A RUFY2 Silent p.L166L 0.13 TCGA-CX-7085-01 10 74700955 74700955 C T PLA2G12B Silent p.R146R 0.12 TCGA-CX-7085-01 10 95556810 95556810 C G LGI1 Missense_Mutation p.I308M 0.05 deleterious(0.03) probably_damaging(0.996) TCGA-CX-7085-01 11 102734890 102734890 G C MMP12 RNA 0.07 TCGA-CX-7085-01 11 118374023 118374023 G C KMT2A Missense_Mutation p.L2472F 0.06 benign(0.18) TCGA-CX-7085-01 11 14899669 14899669 C A CYP2R1 Nonstop_Mutation p.*502Lext*? 0.09 TCGA-CX-7085-01 11 14900748 14900748 C A CYP2R1 Missense_Mutation p.W414C 0.09 deleterious(0) probably_damaging(0.998) TCGA-CX-7085-01 11 4936270 4936270 G A OR51G2 Silent p.I208I 0.11 TCGA-CX-7085-01 11 56431616 56431616 G A OR5AR1 Missense_Mutation p.G152D 0.07 deleterious(0) benign(0.314) TCGA-CX-7085-01 11 57578934 57578934 C T CTNND1 Missense_Mutation p.L872F 0.05 deleterious(0) probably_damaging(0.999) TCGA-CX-7085-01 11 61551813 61551813 G C MYRF Missense_Mutation p.E1086Q 0.07 tolerated(0.12) possibly_damaging(0.533) TCGA-CX-7085-01 11 62298517 62298517 C A AHNAK Silent p.L1124L 0.09 TCGA-CX-7085-01 11 66083138 66083138 G C CD248 Missense_Mutation p.S454C 0.06 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-CX-7085-01 11 77412372 77412372 G C RSF1 Missense_Mutation p.I634M 0.07 tolerated_low_confidence(0.26) benign(0.001) TCGA-CX-7085-01 11 93170970 93170970 G C CCDC67 3'UTR 0.13 TCGA-CX-7085-01 12 103352547 103352547 C T ASCL1 Silent p.D175D 0.19 TCGA-CX-7085-01 12 120572483 120572483 G A GCN1L1 Silent p.F2352F 0.11 TCGA-CX-7085-01 12 121164932 121164932 G A ACADS Silent p.E50E 0.05 TCGA-CX-7085-01 12 20876121 20876121 G A SLCO1C1 Silent p.V373V 0.08 TCGA-CX-7085-01 12 32135621 32135621 C G KIAA1551 Missense_Mutation p.Q578E 0.11 tolerated(1) benign(0.001) TCGA-CX-7085-01 12 54910753 54910753 G A NCKAP1L Missense_Mutation p.E358K 0.09 deleterious(0.02) benign(0.05) TCGA-CX-7085-01 12 72667122 72667122 G A TRHDE Silent p.A188A 0.13 TCGA-CX-7085-01 14 105355926 105355926 C T CEP170B Intron 0.19 TCGA-CX-7085-01 14 20248859 20248859 C T OR4M1 Silent p.I126I 0.03 TCGA-CX-7085-01 14 64716327 64716327 G A ESR2 Nonsense_Mutation p.R388* 0.12 TCGA-CX-7085-01 14 65234494 65234494 C G SPTB Missense_Mutation p.D2036H 0.05 deleterious(0) possibly_damaging(0.738) TCGA-CX-7085-01 14 86088748 86088748 A G FLRT2 Missense_Mutation p.D297G 0.08 deleterious(0.01) possibly_damaging(0.809) TCGA-CX-7085-01 15 100594257 100594257 G C ADAMTS17 Missense_Mutation p.L714V 0.08 tolerated(0.07) possibly_damaging(0.669) TCGA-CX-7085-01 15 43122171 43122171 G A TTBK2 Missense_Mutation p.H133Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-CX-7085-01 15 75668128 75668128 C G SIN3A Missense_Mutation p.E1157Q 0.04 tolerated(0.4) benign(0.002) TCGA-CX-7085-01 15 81605590 81605590 G T STARD5 3'UTR 0.08 TCGA-CX-7085-01 15 84706600 84706600 G A ADAMTSL3 3'UTR 0.16 TCGA-CX-7085-01 16 18827770 18827770 G C SMG1 Missense_Mutation p.Q3386E 0.06 tolerated(0.49) benign(0.002) TCGA-CX-7085-01 16 1891862 1891862 G C MEIOB Silent p.L331L 0.09 TCGA-CX-7085-01 16 24955123 24955123 G A ARHGAP17 Silent p.I434I 0.07 TCGA-CX-7085-01 16 2495573 2495573 G A CCNF Silent p.P348P 0.09 TCGA-CX-7085-01 16 28834552 28834552 C G ATXN2L 5'UTR 0.17 TCGA-CX-7085-01 16 56839414 56839414 A T NUP93 Splice_Site p.X121_splice 0.08 TCGA-CX-7085-01 16 66423424 66423424 G C CDH5 Missense_Mutation p.Q260H 0.07 deleterious(0.04) benign(0.009) TCGA-CX-7085-01 17 18881189 18881189 G C FAM83G Nonsense_Mutation p.S597* 0.13 TCGA-CX-7085-01 17 26669278 26669278 C G TNFAIP1 Missense_Mutation p.S175C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CX-7085-01 17 30349042 30349042 C G LRRC37B Missense_Mutation p.Q293E 0.11 tolerated(1) benign(0.027) TCGA-CX-7085-01 17 34431283 34431283 C G CCL4 5'UTR 0.10 TCGA-CX-7085-01 17 35602001 35602001 G C ACACA Missense_Mutation p.Q864E 0.06 deleterious(0.01) benign(0.114) TCGA-CX-7085-01 17 42113560 42113560 C T LSM12 3'UTR 0.11 TCGA-CX-7085-01 17 45662950 45662950 C G NPEPPS Missense_Mutation p.L245V 0.12 deleterious(0) probably_damaging(1) TCGA-CX-7085-01 17 61621693 61621693 C G KCNH6 Missense_Mutation p.Q809E 0.12 tolerated_low_confidence(1) benign(0.01) TCGA-CX-7085-01 17 61889312 61889312 G C DDX42 Missense_Mutation p.Q473H 0.09 deleterious(0) probably_damaging(0.994) TCGA-CX-7085-01 17 8273686 8273686 G C KRBA2 Missense_Mutation p.S82C 0.06 deleterious(0.01) possibly_damaging(0.907) TCGA-CX-7085-01 18 32887619 32887619 G A ZNF271 RNA 0.07 TCGA-CX-7085-01 18 40695528 40695528 C T RIT2 5'UTR 0.10 TCGA-CX-7085-01 18 72345521 72345521 C T ZNF407 Missense_Mutation p.S849L 0.10 deleterious(0) probably_damaging(0.994) TCGA-CX-7085-01 18 743308 743308 G A YES1 Nonsense_Mutation p.R278* 0.12 TCGA-CX-7085-01 19 3155896 3155896 C G GNA15 Missense_Mutation p.I230M 0.06 tolerated(0.37) possibly_damaging(0.81) TCGA-CX-7085-01 19 36357106 36357106 G A KIRREL2 Silent p.L613L 0.11 TCGA-CX-7085-01 19 39926562 39926562 C G RPS16 5'UTR 0.11 TCGA-CX-7085-01 19 41122917 41122917 G A LTBP4 Missense_Mutation p.G1046R 0.13 tolerated(0.28) possibly_damaging(0.859) TCGA-CX-7085-01 19 41812494 41812494 G A HNRNPUL1 3'UTR 0.11 TCGA-CX-7085-01 19 45490456 45490456 G A CLPTM1 Silent p.V271V 0.09 TCGA-CX-7085-01 19 49129394 49129394 G A SPHK2 Missense_Mutation p.E96K 0.14 deleterious(0.02) possibly_damaging(0.514) TCGA-CX-7085-01 19 52658816 52658816 G C ZNF836 Nonsense_Mutation p.S707* 0.17 TCGA-CX-7085-01 19 54377026 54377026 C G MYADM Missense_Mutation p.I81M 0.05 deleterious(0) possibly_damaging(0.831) TCGA-CX-7085-01 19 55401062 55401062 G A FCAR Missense_Mutation p.V233M 0.07 tolerated(0.5) benign(0.041) TCGA-CX-7085-01 19 58697097 58697097 G A ZNF274 Missense_Mutation p.D18N 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-CX-7085-01 19 59063499 59063499 C T CHMP2A Silent p.E134E 0.06 TCGA-CX-7085-01 1 113657399 113657399 A G LRIG2 Missense_Mutation p.I811V 0.13 deleterious(0.01) possibly_damaging(0.656) TCGA-CX-7085-01 1 117644143 117644143 C T TTF2 Silent p.I1162I 0.09 TCGA-CX-7085-01 1 149783657 149783657 G C HIST2H2BF Missense_Mutation p.I74M 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.677) TCGA-CX-7085-01 1 150956843 150956843 C T ANXA9 Silent p.D118D 0.06 TCGA-CX-7085-01 1 156779022 156779022 G A SH2D2A Silent p.S335S 0.06 TCGA-CX-7085-01 1 16907249 16907249 T C NBPF1 Missense_Mutation p.I528V 0.02 tolerated(0.1) possibly_damaging(0.674) TCGA-CX-7085-01 1 246729453 246729453 C T TFB2M 5'UTR 0.19 TCGA-CX-7085-01 1 248551279 248551279 G A OR2T6 Missense_Mutation p.V124M 0.12 tolerated(0.1) benign(0.298) TCGA-CX-7085-01 1 32673134 32673134 G A IQCC Silent p.P364P 0.13 TCGA-CX-7085-01 1 36909632 36909632 C T OSCP1 Intron 0.08 TCGA-CX-7085-01 1 54060498 54060498 G A GLIS1 Silent p.L26L 0.21 TCGA-CX-7085-01 20 34091328 34091328 G C CEP250 Missense_Mutation p.E1711Q 0.05 probably_damaging(0.94) TCGA-CX-7085-01 22 22453476 22453476 C T IGLV8-61 Silent p.I74I 0.07 TCGA-CX-7085-01 22 35658315 35658315 G C HMGXB4 Splice_Site 0.08 TCGA-CX-7085-01 22 43272940 43272940 C T PACSIN2 Missense_Mutation p.D369N 0.06 tolerated(0.14) possibly_damaging(0.747) TCGA-CX-7085-01 2 108507247 108507247 G T RGPD4 3'UTR 0.09 TCGA-CX-7085-01 2 170050332 170050332 C G LRP2 Missense_Mutation p.W2923C 0.05 probably_damaging(0.987) TCGA-CX-7085-01 2 191524404 191524404 G A NAB1 Missense_Mutation p.E168K 0.15 tolerated(0.09) benign(0.009) TCGA-CX-7085-01 2 202151270 202151270 C T CASP8 Nonsense_Mutation p.Q524* 0.15 TCGA-CX-7085-01 2 203772641 203772641 G C WDR12 Missense_Mutation p.S28C 0.07 deleterious(0.05) possibly_damaging(0.781) TCGA-CX-7085-01 2 217279568 217279568 C T SMARCAL1 Silent p.F47F 0.07 TCGA-CX-7085-01 2 238283539 238283539 G A COL6A3 Silent p.V1065V 0.10 TCGA-CX-7085-01 2 39234255 39234255 C G SOS1 Missense_Mutation p.E864Q 0.08 deleterious(0.04) probably_damaging(0.974) TCGA-CX-7085-01 2 86693679 86693679 G A KDM3A Missense_Mutation p.D398N 0.08 tolerated_low_confidence(0.35) benign(0.001) TCGA-CX-7085-01 3 123452808 123452808 G A MYLK Silent p.I345I 0.06 TCGA-CX-7085-01 3 125775279 125775279 G C SLC41A3 Intron 0.08 TCGA-CX-7085-01 3 128631364 128631364 C G ACAD9 Missense_Mutation p.L594V 0.15 tolerated(0.23) benign(0.011) TCGA-CX-7085-01 3 48508971 48508971 G A TREX1 Missense_Mutation p.G361E 0.09 deleterious_low_confidence(0.05) benign(0.096) TCGA-CX-7085-01 3 49053656 49053656 C G DALRD3 Missense_Mutation p.E422Q 0.08 tolerated(0.09) benign(0.236) TCGA-CX-7085-01 3 50369058 50369058 C T RASSF1 Missense_Mutation p.R235Q 0.12 deleterious(0.01) possibly_damaging(0.684) TCGA-CX-7085-01 3 64145632 64145632 C T PRICKLE2 Missense_Mutation p.G127E 0.09 tolerated(0.09) possibly_damaging(0.694) TCGA-CX-7085-01 4 126239528 126239528 C G FAT4 Missense_Mutation p.F654L 0.12 benign(0.012) TCGA-CX-7085-01 4 139153472 139153472 G C SLC7A11 Missense_Mutation p.Q157E 0.12 deleterious(0.04) benign(0.04) TCGA-CX-7085-01 4 154544100 154544100 G A KIAA0922 Missense_Mutation p.D1304N 0.10 tolerated(0.1) probably_damaging(0.954) TCGA-CX-7085-01 4 1801486 1801486 C T FGFR3 Missense_Mutation p.S131L 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-CX-7085-01 4 183713749 183713749 G C TENM3 Missense_Mutation p.G1975A 0.05 deleterious(0) probably_damaging(0.91) TCGA-CX-7085-01 4 187516868 187516868 G C FAT1 Missense_Mutation p.F4371L 0.09 benign(0.212) TCGA-CX-7085-01 4 187516881 187516881 G C FAT1 Missense_Mutation p.S4367C 0.10 probably_damaging(0.999) TCGA-CX-7085-01 4 187630459 187630459 C G FAT1 Missense_Mutation p.D175H 0.10 probably_damaging(1) TCGA-CX-7085-01 4 55144560 55144560 C G PDGFRA Missense_Mutation p.F678L 0.05 tolerated(0.68) probably_damaging(0.914) TCGA-CX-7085-01 4 70074139 70074139 G A UGT2B11 Missense_Mutation p.S311L 0.09 deleterious(0) probably_damaging(0.999) TCGA-CX-7085-01 4 76708301 76708301 G A USO1 Silent p.Q316Q 0.07 TCGA-CX-7085-01 4 89618637 89618637 C A NAP1L5 Missense_Mutation p.R90L 0.08 deleterious(0.01) probably_damaging(0.974) TCGA-CX-7085-01 5 101724493 101724493 C T SLCO6A1 Missense_Mutation p.G639E 0.18 tolerated(0.65) possibly_damaging(0.521) TCGA-CX-7085-01 5 140229699 140229699 C T PCDHA9 Missense_Mutation p.A540V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-CX-7085-01 5 140306523 140306523 G A PCDHAC1 Missense_Mutation p.G16S 0.10 tolerated(0.11) benign(0.009) TCGA-CX-7085-01 5 140734878 140734878 G T PCDHGA4 Missense_Mutation p.E37D 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CX-7085-01 5 142780167 142780178 TGGACAGATCTG - NR3C1 In_Frame_Del p.P76_K80delinsQ 0.08 TCGA-CX-7085-01 5 33963899 33963899 G C SLC45A2 Nonsense_Mutation p.S262* 0.05 TCGA-CX-7085-01 5 79026056 79026056 G C CMYA5 Missense_Mutation p.E490Q 0.11 possibly_damaging(0.727) TCGA-CX-7085-01 6 118812872 118812872 C T CEP85L Missense_Mutation p.E475K 0.15 deleterious(0.05) probably_damaging(0.981) TCGA-CX-7085-01 6 129419471 129419471 C T LAMA2 Missense_Mutation p.P184S 0.14 deleterious(0) probably_damaging(1) TCGA-CX-7085-01 6 30571943 30571943 C T PPP1R10 Silent p.L450L 0.07 TCGA-CX-7085-01 6 33693275 33693275 C G IP6K3 Missense_Mutation p.M236I 0.11 tolerated(1) benign(0.005) TCGA-CX-7085-01 6 39843215 39843215 G A DAAM2 Silent p.E424E 0.12 TCGA-CX-7085-01 6 71562302 71562302 G A SMAP1 Missense_Mutation p.D242N 0.07 deleterious(0.02) probably_damaging(0.987) TCGA-CX-7085-01 7 100281196 100281196 C G GIGYF1 Missense_Mutation p.E677Q 0.06 deleterious(0.02) unknown(0) TCGA-CX-7085-01 7 100482943 100482943 C G SRRT Silent p.L423L 0.09 TCGA-CX-7085-01 7 100483972 100483972 C G SRRT Missense_Mutation p.I521M 0.14 deleterious(0.03) possibly_damaging(0.496) TCGA-CX-7085-01 7 104377175 104377175 G A LHFPL3 Missense_Mutation p.E167K 0.13 tolerated(0.18) possibly_damaging(0.775) TCGA-CX-7085-01 7 140154936 140154936 C G MKRN1 Missense_Mutation p.E399Q 0.07 tolerated(0.2) probably_damaging(0.96) TCGA-CX-7085-01 7 42084994 42084994 T A GLI3 Missense_Mutation p.H272L 0.09 tolerated(0.1) probably_damaging(0.968) TCGA-CX-7085-01 7 6431563 6431563 A G RAC1 Missense_Mutation p.N39S 0.06 deleterious(0.01) benign(0.425) TCGA-CX-7085-01 7 76109854 76109854 G T DTX2 Missense_Mutation p.V10L 0.10 tolerated_low_confidence(0.16) benign(0.027) TCGA-CX-7085-01 7 86815200 86815200 G A DMTF1 Missense_Mutation p.E369K 0.11 tolerated(0.4) benign(0.014) TCGA-CX-7085-01 8 139164247 139164247 C A FAM135B Missense_Mutation p.G824V 0.08 tolerated(0.22) benign(0.003) TCGA-CX-7085-01 8 19683985 19683985 C T INTS10 Missense_Mutation p.S352L 0.11 tolerated(0.06) benign(0.004) TCGA-CX-7085-01 8 32621346 32621346 C T NRG1 Missense_Mutation p.S455L 0.08 tolerated(0.14) benign(0.016) TCGA-CX-7085-01 9 101910003 101910003 G C TGFBR1 Missense_Mutation p.M441I 0.11 deleterious(0.01) probably_damaging(0.94) TCGA-CX-7085-01 9 111670656 111670656 C T IKBKAP Silent p.V463V 0.08 TCGA-CX-7085-01 9 117692466 117692466 A G TNFSF8 Missense_Mutation p.Y40H 0.10 tolerated(0.06) possibly_damaging(0.907) TCGA-CX-7085-01 9 132397708 132397708 G C NTMT1 Missense_Mutation p.E213Q 0.05 tolerated(0.64) possibly_damaging(0.813) TCGA-CX-7085-01 9 132854657 132854657 G A GPR107 Missense_Mutation p.R287Q 0.07 tolerated(0.08) benign(0.107) TCGA-CX-7085-01 9 139412282 139412282 C T NOTCH1 Missense_Mutation p.E455K 0.22 deleterious(0) probably_damaging(1) TCGA-CX-7085-01 9 32632475 32632475 C T TAF1L Missense_Mutation p.E1035K 0.08 deleterious(0) probably_damaging(0.922) TCGA-CX-7085-01 X 100177939 100177939 C G XKRX Silent p.L149L 0.04 TCGA-CX-7085-01 X 122551330 122551330 G C GRIA3 Missense_Mutation p.M526I 0.04 deleterious(0) benign(0.184) TCGA-CX-7085-01 X 122747943 122747943 C T THOC2 Missense_Mutation p.R1470K 0.07 tolerated(0.32) benign(0.002) TCGA-CX-7085-01 X 140993500 140993500 G C MAGEC1 Missense_Mutation p.E104Q 0.07 deleterious_low_confidence(0) benign(0.403) TCGA-CX-7085-01 X 153006171 153006171 G C ABCD1 Missense_Mutation p.G593A 0.11 deleterious(0.03) possibly_damaging(0.733) TCGA-CX-7085-01 X 46887308 46887308 G A JADE3 Missense_Mutation p.D164N 0.12 tolerated(0.07) probably_damaging(0.996) TCGA-CX-7085-01 X 57020780 57020780 C T SPIN3 Missense_Mutation p.E201K 0.14 tolerated(0.58) benign(0.076) TCGA-CX-7086-01 10 114177625 114177625 C A ACSL5 Missense_Mutation p.R470S 0.55 deleterious(0.04) benign(0.09) TCGA-CX-7086-01 10 121342100 121342100 G C TIAL1 Silent p.V50V 0.33 TCGA-CX-7086-01 10 124336113 124336113 C A DMBT1 Nonsense_Mutation p.S161* 0.27 TCGA-CX-7086-01 10 23481462 23481462 G C PTF1A Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) benign(0.38) TCGA-CX-7086-01 10 31803553 31803553 G T ZEB1 Missense_Mutation p.C237F 0.12 deleterious(0) benign(0.195) TCGA-CX-7086-01 10 75552009 75552009 G A ZSWIM8 Missense_Mutation p.G571E 0.07 deleterious_low_confidence(0.03) benign(0.281) TCGA-CX-7086-01 10 91066959 91066959 C A IFIT2 Missense_Mutation p.Q416K 0.24 tolerated(0.43) benign(0.017) TCGA-CX-7086-01 10 94835689 94835689 A G CYP26A1 Missense_Mutation p.Q324R 0.51 tolerated(0.1) benign(0.002) TCGA-CX-7086-01 11 101832997 101832997 G A KIAA1377 Missense_Mutation p.E411K 0.05 tolerated(0.14) benign(0.081) TCGA-CX-7086-01 11 17122958 17122958 G A PIK3C2A Missense_Mutation p.T1292I 0.17 deleterious(0) probably_damaging(0.962) TCGA-CX-7086-01 11 20907084 20907084 A G NELL1 Missense_Mutation p.K201E 0.33 deleterious(0) possibly_damaging(0.461) TCGA-CX-7086-01 11 51515583 51515583 G A OR4C46 Missense_Mutation p.G101E 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-CX-7086-01 11 5410918 5410918 T C OR51M1 Missense_Mutation p.F97S 0.29 deleterious(0) probably_damaging(0.989) TCGA-CX-7086-01 11 55761812 55761812 C A OR5F1 Missense_Mutation p.C97F 0.25 deleterious(0) probably_damaging(0.999) TCGA-CX-7086-01 11 607244 607244 G A PHRF1 Silent p.A595A 0.23 TCGA-CX-7086-01 11 61110820 61110820 G A DAK Missense_Mutation p.R291H 0.25 deleterious(0.02) benign(0.149) TCGA-CX-7086-01 11 6292427 6292427 G A CCKBR Missense_Mutation p.R333Q 0.13 tolerated(0.06) probably_damaging(0.958) TCGA-CX-7086-01 11 65266459 65266459 T A MALAT1 RNA 0.55 TCGA-CX-7086-01 11 65308358 65308358 G A LTBP3 Silent p.G987G 0.38 TCGA-CX-7086-01 11 65350494 65350494 C T EHBP1L1 Missense_Mutation p.S784L 0.19 tolerated(0.17) benign(0.002) TCGA-CX-7086-01 11 66460538 66460557 GCTTCTTCACCTCTGCCTGG - SPTBN2 Frame_Shift_Del p.Q1624Pfs*26 0.17 TCGA-CX-7086-01 11 66888812 66888812 C T KDM2A Missense_Mutation p.R9C 0.24 deleterious(0.02) possibly_damaging(0.72) TCGA-CX-7086-01 11 67789312 67789312 C T ALDH3B1 Nonsense_Mutation p.Q306* 0.27 TCGA-CX-7086-01 11 69482235 69482235 C T ORAOV1 3'UTR 0.15 TCGA-CX-7086-01 11 70171106 70171106 C G PPFIA1 Missense_Mutation p.L174V 0.04 deleterious(0) probably_damaging(1) TCGA-CX-7086-01 11 70176374 70176374 C G PPFIA1 Silent p.L342L 0.04 TCGA-CX-7086-01 12 101685601 101685601 A G UTP20 Missense_Mutation p.T325A 0.26 tolerated(0.8) benign(0.001) TCGA-CX-7086-01 12 106461427 106461427 G A NUAK1 Missense_Mutation p.S380F 0.28 deleterious(0.01) possibly_damaging(0.613) TCGA-CX-7086-01 12 11035030 11035030 G C PRH1 Missense_Mutation p.P102R 0.14 tolerated_low_confidence(0.34) unknown(0) TCGA-CX-7086-01 12 132681642 132681642 G A GALNT9 3'UTR 0.19 TCGA-CX-7086-01 12 1889776 1889776 C T ADIPOR2 Missense_Mutation p.S208L 0.14 deleterious(0) probably_damaging(0.997) TCGA-CX-7086-01 12 21998701 21998701 G T ABCC9 Missense_Mutation p.P978T 0.15 deleterious(0) possibly_damaging(0.572) TCGA-CX-7086-01 12 21998702 21998702 C T ABCC9 Missense_Mutation p.M977I 0.15 tolerated(1) benign(0.001) TCGA-CX-7086-01 12 29689237 29689237 T G TMTC1 Missense_Mutation p.K564Q 0.41 tolerated(0.5) benign(0.009) TCGA-CX-7086-01 12 48143226 48143226 C T RAPGEF3 Missense_Mutation p.D330N 0.10 tolerated(0.22) benign(0.02) TCGA-CX-7086-01 12 49445184 49445184 A - KMT2D Frame_Shift_Del p.L761Hfs*169 0.21 TCGA-CX-7086-01 12 57858517 57858517 C G GLI1 Missense_Mutation p.I85M 0.28 deleterious(0) possibly_damaging(0.494) TCGA-CX-7086-01 12 7649555 7649555 C G CD163 Missense_Mutation p.R318P 0.50 tolerated(0.22) probably_damaging(0.974) TCGA-CX-7086-01 12 8211882 8211882 A T C3AR1 Silent p.A300A 0.34 TCGA-CX-7086-01 12 85500352 85500352 G T LRRIQ1 Missense_Mutation p.L1112F 0.11 deleterious(0) probably_damaging(0.92) TCGA-CX-7086-01 13 109438041 109438041 T C MYO16 Missense_Mutation p.V167A 0.42 tolerated(0.19) benign(0.023) TCGA-CX-7086-01 13 113748882 113748882 C G MCF2L Nonsense_Mutation p.S1003* 0.26 TCGA-CX-7086-01 13 23945292 23945292 T A SACS Missense_Mutation p.I62F 0.29 benign(0.029) TCGA-CX-7086-01 13 35517144 35517144 C G NBEA Missense_Mutation p.P63A 0.35 deleterious_low_confidence(0.04) benign(0.059) TCGA-CX-7086-01 13 46563012 46563012 G C ZC3H13 Missense_Mutation p.P389A 0.19 unknown(0) TCGA-CX-7086-01 13 52586554 52586554 G A ALG11 5'UTR 0.32 TCGA-CX-7086-01 14 106478275 106478275 C T IGHV4-4 Silent p.G61G 0.07 TCGA-CX-7086-01 14 23548865 23548865 C T ACIN1 Missense_Mutation p.R618H 0.19 benign(0.007) TCGA-CX-7086-01 14 24531703 24531703 C G LRRC16B Nonsense_Mutation p.S832* 0.20 TCGA-CX-7086-01 14 25288333 25288333 C G STXBP6 Missense_Mutation p.L173F 0.05 deleterious(0) probably_damaging(0.997) TCGA-CX-7086-01 14 57749862 57749862 C T AP5M1 Missense_Mutation p.L403F 0.15 deleterious(0) possibly_damaging(0.907) TCGA-CX-7086-01 14 61444232 61444232 C A TRMT5 Missense_Mutation p.K264N 0.12 deleterious(0.01) benign(0.326) TCGA-CX-7086-01 14 64595181 64595181 G T SYNE2 Missense_Mutation p.K4643N 0.12 probably_damaging(0.999) TCGA-CX-7086-01 14 64595183 64595183 G A SYNE2 Missense_Mutation p.R4644K 0.12 probably_damaging(0.995) TCGA-CX-7086-01 14 64596835 64596835 G A SYNE2 Missense_Mutation p.E4737K 0.11 benign(0.199) TCGA-CX-7086-01 14 91142901 91142901 A G TTC7B Missense_Mutation p.L373P 0.14 deleterious(0) probably_damaging(1) TCGA-CX-7086-01 15 23890759 23890759 C T MAGEL2 Missense_Mutation p.A108T 0.36 tolerated_low_confidence(0.47) benign(0.005) TCGA-CX-7086-01 15 33927944 33927944 G A RYR3 Missense_Mutation p.G1102D 0.32 probably_damaging(1) TCGA-CX-7086-01 15 40568201 40568201 A T PAK6 Missense_Mutation p.E651V 0.21 deleterious(0) possibly_damaging(0.895) TCGA-CX-7086-01 15 43346982 43346982 T A UBR1 Missense_Mutation p.Q466L 0.36 tolerated(0.24) benign(0.046) TCGA-CX-7086-01 15 45455880 45455880 A G DUOX1 Missense_Mutation p.M1467V 0.14 deleterious(0) possibly_damaging(0.718) TCGA-CX-7086-01 15 52531989 52531989 C A MYO5C Missense_Mutation p.V882L 0.16 tolerated(0.17) possibly_damaging(0.628) TCGA-CX-7086-01 15 55677908 55677908 G T CCPG1 Nonsense_Mutation p.S22* 0.39 TCGA-CX-7086-01 15 62254026 62254026 T C VPS13C Missense_Mutation p.R1224G 0.25 deleterious(0.01) benign(0.14) TCGA-CX-7086-01 15 65490630 65490630 C G CILP Missense_Mutation p.R665T 0.19 tolerated(0.25) benign(0) TCGA-CX-7086-01 15 71197029 71197029 G C LRRC49 Missense_Mutation p.Q150H 0.23 tolerated(0.42) benign(0.008) TCGA-CX-7086-01 15 75501034 75501034 G A C15orf39 Missense_Mutation p.R882Q 0.36 deleterious(0) possibly_damaging(0.841) TCGA-CX-7086-01 15 81575048 81575048 G A IL16 Missense_Mutation p.V384I 0.21 tolerated(1) benign(0.007) TCGA-CX-7086-01 15 83926268 83926268 G A BNC1 Missense_Mutation p.R971C 0.56 deleterious(0) probably_damaging(0.999) TCGA-CX-7086-01 15 86286764 86286764 C G AKAP13 Missense_Mutation p.F2704L 0.12 tolerated(0.18) possibly_damaging(0.45) TCGA-CX-7086-01 16 1498432 1498432 A T CLCN7 Missense_Mutation p.V646D 0.32 tolerated(0.22) benign(0.001) TCGA-CX-7086-01 16 25175987 25175987 T A LCMT1 Missense_Mutation p.L213Q 0.16 deleterious(0) probably_damaging(0.98) TCGA-CX-7086-01 16 2522335 2522335 C G NTN3 Silent p.L211L 0.16 TCGA-CX-7086-01 16 27363876 27363876 G A IL4R Missense_Mutation p.V177M 0.22 deleterious(0) probably_damaging(0.971) TCGA-CX-7086-01 16 28847379 28847379 G A ATXN2L Silent p.Q1007Q 0.19 TCGA-CX-7086-01 16 46782168 46782168 C T MYLK3 5'UTR 0.19 TCGA-CX-7086-01 16 52473778 52473778 G A TOX3 Nonsense_Mutation p.Q364* 0.14 TCGA-CX-7086-01 16 58589282 58589282 C T CNOT1 Missense_Mutation p.E922K 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-CX-7086-01 16 65397150 65397150 G C LINC00922 RNA 0.28 TCGA-CX-7086-01 16 65397170 65397170 G C LINC00922 RNA 0.30 TCGA-CX-7086-01 16 67203679 67203679 C T HSF4 Silent p.P490P 0.21 TCGA-CX-7086-01 16 67574260 67574260 A G FAM65A Missense_Mutation p.M229V 0.29 deleterious(0.01) possibly_damaging(0.599) TCGA-CX-7086-01 16 70575647 70575647 A G SF3B3 Silent p.E381E 0.24 TCGA-CX-7086-01 17 27963169 27963169 G A SSH2 Silent p.T666T 0.43 TCGA-CX-7086-01 17 42228331 42228331 G A C17orf53 Silent p.Q409Q 0.13 TCGA-CX-7086-01 17 47241498 47241498 G A B4GALNT2 Missense_Mutation p.R332H 0.37 deleterious(0.02) benign(0.243) TCGA-CX-7086-01 17 53797957 53797957 C G TMEM100 3'UTR 0.41 TCGA-CX-7086-01 17 54559920 54559920 C A ANKFN1 3'UTR 0.23 TCGA-CX-7086-01 17 72367969 72367969 C T GPR142 Nonsense_Mutation p.Q207* 0.48 TCGA-CX-7086-01 17 7577062 7577062 T - TP53 Frame_Shift_Del p.E294Sfs*51 0.36 TCGA-CX-7086-01 17 79846187 79846187 G A ALYREF Missense_Mutation p.A237V 0.53 tolerated(0.19) benign(0.173) TCGA-CX-7086-01 18 19153946 19153946 G C ESCO1 Missense_Mutation p.Q287E 0.28 tolerated(0.22) benign(0.001) TCGA-CX-7086-01 18 40695512 40695512 G C RIT2 5'UTR 0.31 TCGA-CX-7086-01 19 14938380 14938380 A G OR7A5 Missense_Mutation p.I225T 0.21 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-CX-7086-01 19 15349769 15349769 G A BRD4 Silent p.L1269L 0.36 TCGA-CX-7086-01 19 15350615 15350615 G A BRD4 Silent p.S1100S 0.35 TCGA-CX-7086-01 19 35516979 35516979 C T GRAMD1A Silent p.H703H 0.21 TCGA-CX-7086-01 19 39760455 39760455 A - IFNL2 Frame_Shift_Del p.K168Rfs*23 0.30 TCGA-CX-7086-01 19 39957129 39957129 G A SUPT5H Missense_Mutation p.V296M 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-CX-7086-01 19 45395690 45395690 C A TOMM40 Silent p.V105V 0.15 TCGA-CX-7086-01 19 45540982 45540982 C T RELB Silent p.F558F 0.13 TCGA-CX-7086-01 19 49260229 49260229 G - FGF21 Frame_Shift_Del p.G95Efs*100 0.15 TCGA-CX-7086-01 19 4960672 4960672 G A UHRF1 RNA 0.24 TCGA-CX-7086-01 19 50212082 50212082 G C CPT1C Missense_Mutation p.D518H 0.28 tolerated(0.06) benign(0.133) TCGA-CX-7086-01 19 53086538 53086538 G C ZNF701 Missense_Mutation p.R475P 0.12 tolerated(1) benign(0.001) TCGA-CX-7086-01 19 53116465 53116465 G T ZNF83 Missense_Mutation p.H451Q 0.23 deleterious(0) probably_damaging(0.918) TCGA-CX-7086-01 19 54392993 54392993 G C PRKCG Missense_Mutation p.M129I 0.14 deleterious(0.04) benign(0.013) TCGA-CX-7086-01 19 55401062 55401062 G A FCAR Missense_Mutation p.V233M 0.21 tolerated(0.5) benign(0.041) TCGA-CX-7086-01 19 55447788 55447788 A G NLRP7 Missense_Mutation p.V714A 0.27 deleterious(0.01) benign(0.248) TCGA-CX-7086-01 19 58967773 58967773 C T ZNF324B Missense_Mutation p.R488C 0.14 deleterious(0) probably_damaging(0.982) TCGA-CX-7086-01 19 9047546 9047546 G A MUC16 Missense_Mutation p.P11362L 0.18 benign(0.001) TCGA-CX-7086-01 19 9049324 9049324 G A MUC16 Silent p.V10769V 0.12 TCGA-CX-7086-01 1 104115729 104115729 T A AMY2B Missense_Mutation p.N120K 0.49 tolerated(0.66) benign(0.024) TCGA-CX-7086-01 1 145563054 145563054 G A ANKRD35 Silent p.E914E 0.10 TCGA-CX-7086-01 1 145592664 145592664 C A POLR3C 3'UTR 0.10 TCGA-CX-7086-01 1 147091317 147091317 C T BCL9 Silent p.S452S 0.18 TCGA-CX-7086-01 1 148594648 148594648 T C NBPF15 3'UTR 0.23 TCGA-CX-7086-01 1 149785127 149785127 T A HIST2H3D Missense_Mutation p.K37M 0.14 deleterious_low_confidence(0.01) benign(0.158) TCGA-CX-7086-01 1 150241157 150241157 G A APH1A Silent p.F18F 0.31 TCGA-CX-7086-01 1 152276145 152276145 G A FLG Silent p.H3739H 0.05 TCGA-CX-7086-01 1 15287295 15287295 C T KAZN Silent p.V114V 0.41 TCGA-CX-7086-01 1 156504953 156504953 G T IQGAP3 Splice_Site p.X1169_splice 0.21 TCGA-CX-7086-01 1 161487824 161487824 C T FCGR2A Silent p.D280D 0.65 TCGA-CX-7086-01 1 161953788 161953788 C A OLFML2B Nonsense_Mutation p.E644* 0.83 TCGA-CX-7086-01 1 1650883 1650885 TCT - CDK11A In_Frame_Del p.E79del 0.10 TCGA-CX-7086-01 1 169364286 169364286 C T CCDC181 Silent p.%3D 0.38 TCGA-CX-7086-01 1 170521651 170521651 T G GORAB 3'UTR 0.15 TCGA-CX-7086-01 1 170967299 170967299 C G MROH9 Missense_Mutation p.L494V 0.53 deleterious(0) probably_damaging(0.964) TCGA-CX-7086-01 1 172376929 172376929 C A DNM3 Nonsense_Mutation p.S847* 0.63 TCGA-CX-7086-01 1 173878987 173878987 G T SERPINC1 Missense_Mutation p.Q286K 0.16 tolerated(0.07) probably_damaging(0.985) TCGA-CX-7086-01 1 203024771 203024771 G A PPFIA4 Missense_Mutation p.D175N 0.17 deleterious(0.01) benign(0.244) TCGA-CX-7086-01 1 204124947 204124947 C A REN Splice_Site p.X353_splice 0.67 TCGA-CX-7086-01 1 205272902 205272902 G A NUAK2 Silent p.F521F 0.15 TCGA-CX-7086-01 1 207639997 207639997 G A CR2 Missense_Mutation p.S62N 0.20 tolerated(0.31) benign(0) TCGA-CX-7086-01 1 214706302 214706302 G A PTPN14 Intron 0.27 TCGA-CX-7086-01 1 229770966 229770966 C T URB2 Silent p.L202L 0.12 TCGA-CX-7086-01 1 23689135 23689136 - CA ZNF436 Frame_Shift_Ins p.E247Vfs*20 0.29 TCGA-CX-7086-01 1 247024567 247024567 T C AHCTF1 Missense_Mutation p.T1265A 0.56 tolerated(0.61) benign(0) TCGA-CX-7086-01 1 247463763 247463763 C G ZNF496 3'UTR 0.18 TCGA-CX-7086-01 1 248458195 248458195 G T OR2T12 Missense_Mutation p.T229K 0.21 tolerated(0.09) benign(0.014) TCGA-CX-7086-01 1 36379463 36379463 G A AGO1 Missense_Mutation p.D535N 0.14 deleterious(0.02) benign(0.263) TCGA-CX-7086-01 1 36921787 36921787 C G MRPS15 Splice_Site p.X212_splice 0.15 TCGA-CX-7086-01 1 37271712 37271712 C T GRIK3 Silent p.T769T 0.27 TCGA-CX-7086-01 1 45793381 45793381 C T HPDL Silent p.C187C 0.08 TCGA-CX-7086-01 1 46073825 46073825 C G NASP Silent p.V414V 0.18 TCGA-CX-7086-01 1 52287187 52287187 G C NRD1 Missense_Mutation p.F468L 0.11 deleterious(0) probably_damaging(1) TCGA-CX-7086-01 1 64936610 64936610 G A CACHD1 Silent p.G10G 0.48 TCGA-CX-7086-01 20 13839917 13839917 G A SEL1L2 Intron 0.46 TCGA-CX-7086-01 20 29625980 29625980 A C FRG1B Missense_Mutation p.Q75P 0.08 deleterious(0) probably_damaging(0.914) TCGA-CX-7086-01 20 33876280 33876280 C A FAM83C Missense_Mutation p.V264L 0.10 tolerated(0.56) possibly_damaging(0.725) TCGA-CX-7086-01 20 37396229 37396229 C T ACTR5 Missense_Mutation p.S519F 0.11 deleterious(0) probably_damaging(1) TCGA-CX-7086-01 20 44469390 44469390 G A SNX21 Missense_Mutation p.R187Q 0.31 tolerated(0.35) possibly_damaging(0.828) TCGA-CX-7086-01 20 44692044 44692044 C T NCOA5 Missense_Mutation p.E369K 0.09 tolerated(0.07) possibly_damaging(0.466) TCGA-CX-7086-01 20 49562395 49562395 G A DPM1 Missense_Mutation p.L121F 0.42 tolerated(0.29) possibly_damaging(0.533) TCGA-CX-7086-01 20 8639216 8639216 G T PLCB1 Missense_Mutation p.D243Y 0.20 deleterious(0) possibly_damaging(0.696) TCGA-CX-7086-01 21 40572223 40572223 C T BRWD1 Missense_Mutation p.E1559K 0.35 tolerated(0.47) benign(0.129) TCGA-CX-7086-01 22 19118919 19118919 G A TSSK2 Missense_Mutation p.D3N 0.32 deleterious(0) possibly_damaging(0.691) TCGA-CX-7086-01 22 30983347 30983347 C G PES1 Missense_Mutation p.K98N 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-CX-7086-01 22 39218697 39218697 G A NPTXR Missense_Mutation p.P474S 0.25 tolerated(0.21) possibly_damaging(0.79) TCGA-CX-7086-01 22 41077104 41077104 C A MCHR1 Silent p.P147P 0.19 TCGA-CX-7086-01 22 46088947 46088947 C G ATXN10 Missense_Mutation p.S127C 0.18 tolerated(0.2) possibly_damaging(0.606) TCGA-CX-7086-01 22 46508570 46508570 C T FLJ27365 3'UTR 0.41 TCGA-CX-7086-01 22 46508571 46508571 C T FLJ27365 3'UTR 0.44 TCGA-CX-7086-01 22 46752951 46752951 G T TRMU 3'UTR 0.22 TCGA-CX-7086-01 22 50500013 50500013 C T MLC1 Silent p.%3D 0.19 TCGA-CX-7086-01 2 11911611 11911611 C T LPIN1 Silent p.S183S 0.10 TCGA-CX-7086-01 2 149247498 149247498 G A MBD5 Missense_Mutation p.E1200K 0.06 deleterious_low_confidence(0.01) unknown(0) TCGA-CX-7086-01 2 179296811 179296811 A T PRKRA 3'UTR 0.44 TCGA-CX-7086-01 2 179598082 179598082 T A TTN Missense_Mutation p.N5313I 0.38 TCGA-CX-7086-01 2 179615732 179615732 C T TTN Intron 0.04 TCGA-CX-7086-01 2 186672432 186672432 T C FSIP2 Silent p.Y6222Y 0.05 TCGA-CX-7086-01 2 209191008 209191008 G T PIKFYVE Missense_Mutation p.R1158I 0.21 deleterious(0.03) possibly_damaging(0.477) TCGA-CX-7086-01 2 209191022 209191022 C T PIKFYVE Nonsense_Mutation p.Q1163* 0.22 TCGA-CX-7086-01 2 242415337 242415337 C T FARP2 Silent p.L733L 0.26 TCGA-CX-7086-01 2 50318511 50318511 T A NRXN1 Missense_Mutation p.N1263I 0.16 deleterious(0) probably_damaging(1) TCGA-CX-7086-01 2 54859772 54859772 G C SPTBN1 Missense_Mutation p.E1212Q 0.12 tolerated(0.13) probably_damaging(0.944) TCGA-CX-7086-01 2 60687943 60687943 G A BCL11A Missense_Mutation p.P702S 0.30 deleterious(0.01) benign(0.235) TCGA-CX-7086-01 2 9624665 9624666 - T IAH1 Frame_Shift_Ins p.M184Ifs*23 0.29 TCGA-CX-7086-01 3 105258904 105258904 G A ALCAM Silent p.G272G 0.17 TCGA-CX-7086-01 3 112968723 112968723 C A BOC Missense_Mutation p.T25K 0.19 tolerated(0.08) benign(0.075) TCGA-CX-7086-01 3 119912164 119912164 C T GPR156 Missense_Mutation p.S114N 0.38 tolerated(0.22) benign(0.023) TCGA-CX-7086-01 3 120998727 120998727 C T STXBP5L Silent p.T678T 0.42 TCGA-CX-7086-01 3 122003858 122003858 G A CASR Silent p.G1029G 0.19 TCGA-CX-7086-01 3 122629889 122629889 A T SEMA5B Missense_Mutation p.F1086Y 0.44 tolerated(0.08) probably_damaging(0.998) TCGA-CX-7086-01 3 124413262 124413262 C T AC080008.1 3'Flank 0.40 TCGA-CX-7086-01 3 129112095 129112095 C G SNORA7B 3'Flank 0.06 TCGA-CX-7086-01 3 129293182 129293182 G A PLXND1 Silent p.H894H 0.21 TCGA-CX-7086-01 3 130289961 130289961 G A COL6A6 Missense_Mutation p.E901K 0.33 tolerated(0.07) probably_damaging(0.998) TCGA-CX-7086-01 3 130743229 130743229 C G ASTE1 Missense_Mutation p.D308H 0.08 tolerated(0.09) possibly_damaging(0.588) TCGA-CX-7086-01 3 145917612 145917612 A G PLSCR4 Silent p.S204S 0.26 TCGA-CX-7086-01 3 160095241 160095241 T C IFT80 Missense_Mutation p.Y116C 0.14 tolerated(0.08) benign(0.025) TCGA-CX-7086-01 3 168802678 168802678 C G MECOM 3'UTR 0.11 TCGA-CX-7086-01 3 179525537 179525537 G T PEX5L Missense_Mutation p.A534E 0.37 deleterious(0) probably_damaging(0.997) TCGA-CX-7086-01 3 179525538 179525538 C T PEX5L Missense_Mutation p.A534T 0.37 deleterious(0) probably_damaging(0.982) TCGA-CX-7086-01 3 183560190 183560190 G A PARL Missense_Mutation p.S218F 0.19 deleterious(0) probably_damaging(0.996) TCGA-CX-7086-01 3 183703150 183703150 C T ABCC5 Intron 0.11 TCGA-CX-7086-01 3 184567769 184567769 A G VPS8 Missense_Mutation p.T238A 0.15 tolerated(0.17) benign(0.013) TCGA-CX-7086-01 3 48505262 48505262 C T ATRIP Nonsense_Mutation p.Q622* 0.15 TCGA-CX-7086-01 3 50357479 50357479 T C HYAL2 Missense_Mutation p.K148E 0.70 deleterious(0) probably_damaging(1) TCGA-CX-7086-01 3 51450829 51450829 C T VPRBP Missense_Mutation p.A886T 0.33 tolerated(0.28) benign(0.12) TCGA-CX-7086-01 3 95374508 95374508 C G MTHFD2P1 RNA 0.16 TCGA-CX-7086-01 4 104640669 104640669 G A TACR3 Missense_Mutation p.P55L 0.14 tolerated_low_confidence(0.6) benign(0) TCGA-CX-7086-01 4 106157411 106157411 G A TET2 Missense_Mutation p.R771K 0.06 tolerated(0.38) benign(0.011) TCGA-CX-7086-01 4 153691231 153691231 G A TIGD4 Missense_Mutation p.S309L 0.11 deleterious(0) benign(0.345) TCGA-CX-7086-01 4 154702581 154702581 C T SFRP2 3'UTR 0.10 TCGA-CX-7086-01 4 155528082 155528082 G T FGG Missense_Mutation p.L302I 0.14 tolerated(0.13) possibly_damaging(0.825) TCGA-CX-7086-01 4 175229984 175229984 G A CEP44 Missense_Mutation p.V218I 0.12 tolerated(0.34) benign(0.015) TCGA-CX-7086-01 4 27004653 27004653 G A STIM2 Missense_Mutation p.R303Q 0.33 tolerated(0.06) probably_damaging(0.99) TCGA-CX-7086-01 4 3225795 3225795 A G HTT Missense_Mutation p.I2568V 0.22 benign(0.001) TCGA-CX-7086-01 4 47458656 47458656 G C COMMD8 Missense_Mutation p.L105V 0.17 tolerated(0.07) possibly_damaging(0.724) TCGA-CX-7086-01 4 48487038 48487038 C A SLC10A4 Missense_Mutation p.P227H 0.33 deleterious(0.04) probably_damaging(0.935) TCGA-CX-7086-01 4 52861475 52861475 A G LRRC66 Silent p.Y571Y 0.19 TCGA-CX-7086-01 4 69344584 69344584 C T TMPRSS11E Missense_Mutation p.L329F 0.22 deleterious(0) probably_damaging(0.983) TCGA-CX-7086-01 4 77116980 77116980 G A SCARB2 Missense_Mutation p.S52F 0.42 tolerated(0.34) benign(0.152) TCGA-CX-7086-01 4 77300534 77300534 G A CCDC158 Missense_Mutation p.S313F 0.21 deleterious(0) possibly_damaging(0.794) TCGA-CX-7086-01 4 78081922 78081922 G T CCNG2 Missense_Mutation p.A109S 0.35 tolerated(0.05) possibly_damaging(0.687) TCGA-CX-7086-01 4 78081923 78081923 C T CCNG2 Missense_Mutation p.A109V 0.34 deleterious(0.05) possibly_damaging(0.802) TCGA-CX-7086-01 5 101572684 101572684 A G SLCO4C1 Missense_Mutation p.F685L 0.58 tolerated(1) benign(0) TCGA-CX-7086-01 5 115628170 115628170 T C COMMD10 Missense_Mutation p.L198P 0.36 deleterious(0) probably_damaging(0.989) TCGA-CX-7086-01 5 140537447 140537447 C G PCDHB17 3'UTR 0.30 TCGA-CX-7086-01 5 147649617 147649617 G T SPINK13 5'UTR 0.31 TCGA-CX-7086-01 5 160758096 160758096 G T GABRB2 Missense_Mutation p.H291N 0.17 tolerated(1) possibly_damaging(0.899) TCGA-CX-7086-01 5 160758097 160758097 G A GABRB2 Silent p.T290T 0.16 TCGA-CX-7086-01 5 16177895 16177895 G T MARCH11 Silent p.T211T 0.14 TCGA-CX-7086-01 5 19747278 19747278 G A CDH18 Missense_Mutation p.T99I 0.44 tolerated(0.1) possibly_damaging(0.827) TCGA-CX-7086-01 5 32089442 32089443 - TCGT PDZD2 Frame_Shift_Ins p.L1964Rfs*14 0.30 TCGA-CX-7086-01 5 41153999 41153999 C T C6 Missense_Mutation p.G735S 0.20 tolerated(0.06) probably_damaging(0.979) TCGA-CX-7086-01 5 41313658 41313658 T C PLCXD3 3'UTR 0.19 TCGA-CX-7086-01 5 44305279 44305279 C T FGF10 Missense_Mutation p.D149N 0.11 tolerated(0.25) possibly_damaging(0.584) TCGA-CX-7086-01 5 49706781 49706781 G A EMB Silent p.S134S 0.21 TCGA-CX-7086-01 5 63256935 63256935 G T HTR1A Missense_Mutation p.F204L 0.29 deleterious(0) probably_damaging(0.999) TCGA-CX-7086-01 6 10557098 10557098 G A GCNT2 Intron 0.22 TCGA-CX-7086-01 6 105573428 105573428 C G BVES Missense_Mutation p.G126A 0.17 tolerated(0.46) benign(0.141) TCGA-CX-7086-01 6 117248219 117248219 C A RFX6 Missense_Mutation p.H639N 0.25 tolerated_low_confidence(0.66) benign(0.001) TCGA-CX-7086-01 6 118887420 118887420 G A CEP85L Missense_Mutation p.P101S 0.10 deleterious(0.04) possibly_damaging(0.833) TCGA-CX-7086-01 6 127899855 127899855 G A C6orf58 Missense_Mutation p.R109K 0.45 tolerated(0.81) benign(0.016) TCGA-CX-7086-01 6 129621886 129621886 G A LAMA2 Missense_Mutation p.E1015K 0.45 deleterious(0.02) benign(0.099) TCGA-CX-7086-01 6 129950552 129950552 T C ARHGAP18 Silent p.K244K 0.23 TCGA-CX-7086-01 6 129959657 129959657 G T ARHGAP18 Missense_Mutation p.A145E 0.26 deleterious(0) possibly_damaging(0.517) TCGA-CX-7086-01 6 137243715 137243715 C T SLC35D3 Missense_Mutation p.S50F 0.52 tolerated(0.77) benign(0.004) TCGA-CX-7086-01 6 146755040 146755040 C T GRM1 Missense_Mutation p.P898L 0.11 deleterious(0.01) benign(0.062) TCGA-CX-7086-01 6 149700391 149700391 C T TAB2 Missense_Mutation p.S447F 0.25 tolerated(0.06) benign(0.161) TCGA-CX-7086-01 6 151859372 151859372 C T CCDC170 Missense_Mutation p.H127Y 0.25 deleterious(0.01) possibly_damaging(0.622) TCGA-CX-7086-01 6 167728907 167728907 G A UNC93A Silent p.Q447Q 0.40 TCGA-CX-7086-01 6 31598493 31598493 G C PRRC2A Missense_Mutation p.D794H 0.33 possibly_damaging(0.861) TCGA-CX-7086-01 6 38819387 38819387 C T DNAH8 Silent p.F1584F 0.12 TCGA-CX-7086-01 6 41119090 41119090 G C TREML1 Missense_Mutation p.L137V 0.23 tolerated(0.18) benign(0.035) TCGA-CX-7086-01 6 42666201 42666202 - T PRPH2 Frame_Shift_Ins p.D291Efs*10 0.22 TCGA-CX-7086-01 6 46669689 46669689 G T TDRD6 3'UTR 0.20 TCGA-CX-7086-01 6 74477802 74477802 G T CD109 Missense_Mutation p.A508S 0.29 tolerated(0.43) benign(0.07) TCGA-CX-7086-01 6 7601613 7601613 C T SNRNP48 Missense_Mutation p.R151W 0.23 deleterious(0) possibly_damaging(0.841) TCGA-CX-7086-01 6 99883568 99883568 C A USP45 3'UTR 0.16 TCGA-CX-7086-01 7 102136626 102136626 G T RASA4B Missense_Mutation p.S344R 0.12 deleterious(0) probably_damaging(0.984) TCGA-CX-7086-01 7 104752438 104752438 C G KMT2E Nonsense_Mutation p.S1412* 0.18 TCGA-CX-7086-01 7 114619638 114619638 G C MDFIC Missense_Mutation p.G208R 0.43 deleterious(0) probably_damaging(0.984) TCGA-CX-7086-01 7 120590962 120590962 A G ING3 Silent p.L4L 0.25 TCGA-CX-7086-01 7 131122674 131122674 A T MKLN1 Missense_Mutation p.Y364F 0.43 tolerated(0.13) possibly_damaging(0.456) TCGA-CX-7086-01 7 131870132 131870132 G C PLXNA4 Missense_Mutation p.I1028M 0.16 tolerated(0.07) possibly_damaging(0.526) TCGA-CX-7086-01 7 141767192 141767192 C T MGAM Intron 0.14 TCGA-CX-7086-01 7 142161958 142161958 G C TRBV6-6 Missense_Mutation p.S106C 0.13 deleterious(0) probably_damaging(0.997) TCGA-CX-7086-01 7 150417901 150417901 C T GIMAP1 Missense_Mutation p.S270F 0.56 tolerated(0.7) benign(0) TCGA-CX-7086-01 7 154379866 154379866 G T DPP6 Intron 0.48 TCGA-CX-7086-01 7 36459826 36459826 G C ANLN Missense_Mutation p.D640H 0.10 deleterious(0.01) probably_damaging(0.91) TCGA-CX-7086-01 7 48007409 48007409 A C HUS1 Missense_Mutation p.L252V 0.36 tolerated(0.51) benign(0.001) TCGA-CX-7086-01 7 48313389 48313389 G C ABCA13 Missense_Mutation p.D1376H 0.29 benign(0.232) TCGA-CX-7086-01 7 4862158 4862158 G A RADIL Silent p.C494C 0.36 TCGA-CX-7086-01 7 50663143 50663143 C A GRB10 Missense_Mutation p.Q543H 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-CX-7086-01 7 92120800 92120800 G C PEX1 Missense_Mutation p.S1075C 0.20 deleterious(0) probably_damaging(0.986) TCGA-CX-7086-01 7 93073008 93073008 A G CALCR Missense_Mutation p.M271T 0.27 deleterious(0) probably_damaging(0.995) TCGA-CX-7086-01 8 110355642 110355642 C T ENY2 Missense_Mutation p.P80S 0.45 deleterious(0) probably_damaging(0.994) TCGA-CX-7086-01 8 121222116 121222116 G A COL14A1 Silent p.E481E 0.26 TCGA-CX-7086-01 8 121292244 121292244 C T COL14A1 Silent p.P1184P 0.07 TCGA-CX-7086-01 8 124526525 124526525 C T FBXO32 Missense_Mutation p.A141T 0.10 deleterious(0.04) possibly_damaging(0.898) TCGA-CX-7086-01 8 139263195 139263195 G A FAM135B Missense_Mutation p.P144L 0.08 tolerated(1) benign(0.19) TCGA-CX-7086-01 8 144946383 144946383 G A EPPK1 Silent p.L347L 0.62 TCGA-CX-7086-01 8 144991527 144991527 C G PLEC Silent p.V4291V 0.07 TCGA-CX-7086-01 8 145096194 145096194 G A SPATC1 Silent p.R456R 0.18 TCGA-CX-7086-01 8 145662239 145662239 T C TONSL Silent p.E597E 0.45 TCGA-CX-7086-01 8 145948557 145948557 C G ZNF251 Missense_Mutation p.R163T 0.22 tolerated(0.42) benign(0) TCGA-CX-7086-01 8 195664 195664 C A ZNF596 Missense_Mutation p.H273N 0.12 deleterious(0) probably_damaging(0.984) TCGA-CX-7086-01 8 2886928 2886928 G T CSMD1 Missense_Mutation p.P2590T 0.33 benign(0.044) TCGA-CX-7086-01 8 55542523 55542523 T A RP1 Missense_Mutation p.D2027E 0.17 tolerated(0.12) benign(0.05) TCGA-CX-7086-01 8 56436490 56436490 C T XKR4 Missense_Mutation p.R553C 0.28 deleterious(0.01) possibly_damaging(0.642) TCGA-CX-7086-01 8 56717593 56717593 G C TGS1 Missense_Mutation p.R714T 0.16 deleterious(0.01) benign(0.038) TCGA-CX-7086-01 8 62555450 62555450 G A ASPH Nonsense_Mutation p.Q263* 0.50 TCGA-CX-7086-01 8 65528763 65528763 C T CYP7B1 Missense_Mutation p.R112Q 0.07 tolerated(0.83) benign(0.012) TCGA-CX-7086-01 9 109734354 109734354 A T ZNF462 Missense_Mutation p.R2166W 0.77 probably_damaging(0.997) TCGA-CX-7086-01 9 113538912 113538912 A C MUSK Missense_Mutation p.D454A 0.25 tolerated(0.19) benign(0.001) TCGA-CX-7086-01 9 120475917 120475917 C G TLR4 Missense_Mutation p.S504C 0.16 deleterious(0) probably_damaging(1) TCGA-CX-7086-01 9 131022757 131022757 C G GOLGA2 Missense_Mutation p.G555A 0.17 tolerated(0.07) possibly_damaging(0.781) TCGA-CX-7086-01 9 132481518 132481518 C T PRRX2 Missense_Mutation p.P90S 0.67 tolerated(1) benign(0.328) TCGA-CX-7086-01 9 16419593 16419593 G A BNC2 Silent p.D898D 0.74 TCGA-CX-7086-01 9 19786060 19786060 G A SLC24A2 Missense_Mutation p.L269F 0.26 deleterious(0) probably_damaging(0.993) TCGA-CX-7086-01 9 27056421 27056421 A G IFT74 Silent p.L529L 0.39 TCGA-CX-7086-01 9 34339067 34339067 C G NUDT2 Missense_Mutation p.I10M 0.24 deleterious(0) probably_damaging(0.951) TCGA-CX-7086-01 9 93375945 93375945 G A DIRAS2 Silent p.C55C 0.76 TCGA-CX-7086-01 X 106097447 106097447 A G TBC1D8B Missense_Mutation p.Y758C 0.79 tolerated(0.09) benign(0.002) TCGA-CX-7086-01 X 108912328 108912328 G C ACSL4 Missense_Mutation p.F400L 0.27 deleterious(0) possibly_damaging(0.816) TCGA-CX-7086-01 X 19379732 19379732 T G PDHA1 3'UTR 0.72 TCGA-CX-7086-01 X 23018798 23018798 G C DDX53 Missense_Mutation p.L208F 0.52 tolerated(0.11) probably_damaging(0.925) TCGA-CX-7086-01 X 83128670 83128670 G A CYLC1 Silent p.K318K 0.76 TCGA-CX-7086-01 X 83129541 83129541 C G CYLC1 Missense_Mutation p.L609V 0.28 deleterious(0.02) probably_damaging(0.958) TCGA-CX-7219-01 10 105179454 105179454 G T PDCD11 Missense_Mutation p.A756S 0.15 deleterious(0.03) possibly_damaging(0.573) TCGA-CX-7219-01 10 124360511 124360511 T C DMBT1 Silent p.T1105T 0.23 TCGA-CX-7219-01 10 55955493 55955493 T G PCDH15 Missense_Mutation p.N419H 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-CX-7219-01 10 70333694 70333694 C T TET1 Silent p.L533L 0.12 TCGA-CX-7219-01 11 108236053 108236053 G A ATM Missense_Mutation p.D2997N 0.39 tolerated(0.1) benign(0.011) TCGA-CX-7219-01 11 1475777 1475777 T C BRSK2 Missense_Mutation p.V582A 0.22 tolerated(0.07) benign(0.053) TCGA-CX-7219-01 11 18159571 18159571 C T MRGPRX3 Silent p.F274F 0.26 TCGA-CX-7219-01 11 55735369 55735369 G A OR10AG1 Missense_Mutation p.H191Y 0.19 tolerated(1) benign(0.003) TCGA-CX-7219-01 11 605263 605263 C G PHRF1 Missense_Mutation p.L433V 0.29 tolerated(1) benign(0.075) TCGA-CX-7219-01 11 67379880 67379880 G A NDUFV1 Missense_Mutation p.R449Q 0.28 deleterious_low_confidence(0) unknown(0) TCGA-CX-7219-01 11 67817516 67817516 G A TCIRG1 Missense_Mutation p.D701N 0.24 tolerated(0.16) benign(0.03) TCGA-CX-7219-01 11 75152748 75152748 C T GDPD5 Missense_Mutation p.R423K 0.32 tolerated(0.54) benign(0) TCGA-CX-7219-01 11 9435863 9435863 C T IPO7 Silent p.L181L 0.24 TCGA-CX-7219-01 12 132239043 132239043 A G SFSWAP Missense_Mutation p.R485G 0.44 deleterious(0) probably_damaging(0.995) TCGA-CX-7219-01 12 132414283 132414283 C T PUS1 Missense_Mutation p.R6C 0.45 deleterious_low_confidence(0) benign(0.034) TCGA-CX-7219-01 12 20893267 20893267 C T SLCO1C1 Silent p.S566S 0.25 TCGA-CX-7219-01 12 4657916 4657916 C G RAD51AP1 Missense_Mutation p.S174C 0.26 deleterious(0) probably_damaging(0.978) TCGA-CX-7219-01 12 51080375 51080375 G A DIP2B Nonsense_Mutation p.W487* 0.45 TCGA-CX-7219-01 12 56669923 56669923 C G CS Missense_Mutation p.K215N 0.41 tolerated(0.24) possibly_damaging(0.606) TCGA-CX-7219-01 12 5744499 5744499 G A ANO2 Silent p.F545F 0.37 TCGA-CX-7219-01 12 57548365 57548365 C T LRP1 Missense_Mutation p.H370Y 0.45 benign(0.085) TCGA-CX-7219-01 12 7303242 7303242 C T CLSTN3 Missense_Mutation p.S783L 0.30 deleterious(0) possibly_damaging(0.85) TCGA-CX-7219-01 13 21217595 21217595 T G IFT88 Missense_Mutation p.Y571D 0.54 deleterious(0.01) possibly_damaging(0.76) TCGA-CX-7219-01 13 70681865 70681865 C T KLHL1 5'UTR 0.44 TCGA-CX-7219-01 14 105207565 105207565 C T ADSSL1 Missense_Mutation p.L303F 0.37 deleterious(0) probably_damaging(0.999) TCGA-CX-7219-01 14 105406529 105406529 G A AHNAK2 Missense_Mutation p.L5087F 0.30 possibly_damaging(0.86) TCGA-CX-7219-01 14 105410194 105410194 C A AHNAK2 Missense_Mutation p.R3865L 0.30 benign(0.002) TCGA-CX-7219-01 14 39565170 39565170 T C SEC23A Silent p.L51L 0.22 TCGA-CX-7219-01 15 23811447 23811447 C T MKRN3 Missense_Mutation p.S173L 0.44 tolerated(0.24) benign(0.006) TCGA-CX-7219-01 15 40093386 40093386 G A GPR176 Missense_Mutation p.R499W 0.35 deleterious_low_confidence(0) benign(0.009) TCGA-CX-7219-01 16 20871625 20871625 G A DCUN1D3 Silent p.F166F 0.31 TCGA-CX-7219-01 16 22260121 22260121 C G EEF2K Missense_Mutation p.I131M 0.18 tolerated(0.07) possibly_damaging(0.655) TCGA-CX-7219-01 16 2239445 2239445 G T CASKIN1 Missense_Mutation p.A122E 0.15 probably_damaging(0.95) TCGA-CX-7219-01 16 66603924 66603924 T C CMTM1 Missense_Mutation p.I173T 0.33 deleterious(0) possibly_damaging(0.61) TCGA-CX-7219-01 16 815234 815234 C T MSLN Missense_Mutation p.P212L 0.29 tolerated(0.33) benign(0.007) TCGA-CX-7219-01 16 90076464 90076464 A T DBNDD1 5'UTR 0.17 TCGA-CX-7219-01 17 16612722 16612722 A T CCDC144A Missense_Mutation p.T451S 0.49 tolerated(0.26) possibly_damaging(0.636) TCGA-CX-7219-01 17 18065978 18065978 G A MYO15A Silent p.E3199E 0.09 TCGA-CX-7219-01 17 2239776 2239776 C T TSR1 5'UTR 0.30 TCGA-CX-7219-01 17 34893502 34893502 G A PIGW Silent p.E184E 0.19 TCGA-CX-7219-01 17 45822604 45822604 G A TBX21 Missense_Mutation p.E494K 0.16 tolerated(0.12) probably_damaging(0.981) TCGA-CX-7219-01 17 48458425 48458425 C T EME1 3'UTR 0.19 TCGA-CX-7219-01 17 49244156 49244156 C T NME1-NME2 Intron 0.46 TCGA-CX-7219-01 17 57119177 57119177 C A TRIM37 Missense_Mutation p.A584S 0.25 tolerated_low_confidence(1) benign(0) TCGA-CX-7219-01 17 7578262 7578262 C G TP53 Missense_Mutation p.R196P 0.54 deleterious(0) probably_damaging(0.999) TCGA-CX-7219-01 17 80013874 80013874 C T GPS1 Intron 0.25 TCGA-CX-7219-01 18 31319985 31319986 - A ASXL3 Frame_Shift_Ins p.V876Sfs*13 0.45 TCGA-CX-7219-01 18 44634950 44634950 C G HDHD2 3'UTR 0.67 TCGA-CX-7219-01 19 1082981 1082981 T A HMHA1 Missense_Mutation p.L903Q 0.38 deleterious(0) benign(0.309) TCGA-CX-7219-01 19 12296615 12296615 G C ZNF136 Missense_Mutation p.E7Q 0.17 deleterious(0.01) probably_damaging(0.946) TCGA-CX-7219-01 19 18232573 18232573 G A MAST3 Silent p.S50S 0.26 TCGA-CX-7219-01 19 34895682 34895682 G T RP11-618P17.4 Silent p.A108A 0.31 TCGA-CX-7219-01 19 40478119 40478119 G C PSMC4 Missense_Mutation p.E35Q 0.23 tolerated(0.5) benign(0.002) TCGA-CX-7219-01 19 49104463 49104463 C G FAM83E Missense_Mutation p.R447T 0.24 deleterious_low_confidence(0) benign(0.245) TCGA-CX-7219-01 19 58944808 58944808 G C ZNF132 Missense_Mutation p.S668C 0.10 deleterious(0.03) possibly_damaging(0.737) TCGA-CX-7219-01 1 10211518 10211518 A T UBE4B Missense_Mutation p.N942I 0.13 tolerated(0.06) benign(0.16) TCGA-CX-7219-01 1 10473290 10473290 G A PGD Missense_Mutation p.V276I 0.33 tolerated(0.7) benign(0.003) TCGA-CX-7219-01 1 1152946 1152946 G A SDF4 Silent p.F345F 0.16 TCGA-CX-7219-01 1 1153119 1153119 C T SDF4 Intron 0.36 TCGA-CX-7219-01 1 1235353 1235353 C G ACAP3 Missense_Mutation p.E221D 0.23 tolerated(0.09) benign(0.359) TCGA-CX-7219-01 1 17023363 17023363 C G ESPNP RNA 0.12 TCGA-CX-7219-01 1 186275989 186275989 G T PRG4 Nonsense_Mutation p.E380* 0.17 TCGA-CX-7219-01 1 198719738 198719738 C T PTPRC Silent p.L1064L 0.16 TCGA-CX-7219-01 1 200635479 200635479 C A DDX59 Missense_Mutation p.E130D 0.24 deleterious(0) probably_damaging(0.997) TCGA-CX-7219-01 1 201013453 201013453 C T CACNA1S Intron 0.20 TCGA-CX-7219-01 1 245775205 245775205 C T KIF26B Silent p.D675D 0.10 TCGA-CX-7219-01 1 40525772 40525772 C T CAP1 Missense_Mutation p.S49L 0.30 tolerated(0.24) benign(0.003) TCGA-CX-7219-01 1 43909378 43909378 G A SZT2 Silent p.L2855L 0.21 TCGA-CX-7219-01 1 53516444 53516444 G A SCP2 3'UTR 0.17 TCGA-CX-7219-01 1 896822 896822 G A KLHL17 Missense_Mutation p.R86H 0.18 deleterious(0) probably_damaging(0.992) TCGA-CX-7219-01 20 25038539 25038567 CGGGCTGCCTGTGCACTCAGCGCGGGATA - ACSS1 Frame_Shift_Del p.Y58Gfs*67 0.25 TCGA-CX-7219-01 20 25457633 25457633 G A NINL Missense_Mutation p.P765L 0.63 tolerated(0.24) benign(0) TCGA-CX-7219-01 20 61512690 61512690 G A DIDO1 Nonsense_Mutation p.Q1540* 0.44 TCGA-CX-7219-01 20 61542922 61542922 C T DIDO1 Missense_Mutation p.A15T 0.48 benign(0.063) TCGA-CX-7219-01 20 8713951 8713951 C A PLCB1 Missense_Mutation p.P652Q 0.17 deleterious(0.04) probably_damaging(1) TCGA-CX-7219-01 21 44524445 44524445 T G U2AF1 Missense_Mutation p.N38H 0.27 tolerated(0.09) benign(0.048) TCGA-CX-7219-01 22 41564727 41564727 T G EP300 Missense_Mutation p.F1343C 0.27 probably_damaging(0.999) TCGA-CX-7219-01 2 108622649 108622649 G A SLC5A7 Missense_Mutation p.A296T 0.23 tolerated(0.09) benign(0.081) TCGA-CX-7219-01 2 179434249 179434249 C T TTN Missense_Mutation p.R25537H 0.08 TCGA-CX-7219-01 2 179648932 179648932 C T TTN Silent p.Q880Q 0.21 TCGA-CX-7219-01 2 183033014 183033014 G C PDE1A Intron 0.21 TCGA-CX-7219-01 2 197189757 197189757 C T HECW2 Missense_Mutation p.E230K 0.25 deleterious(0) probably_damaging(0.996) TCGA-CX-7219-01 2 204078305 204078305 G C NBEAL1 Missense_Mutation p.E2638Q 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CX-7219-01 2 228884679 228884679 C T SPHKAP Silent p.Q297Q 0.26 TCGA-CX-7219-01 2 67637199 67637199 G C ETAA1 3'UTR 0.31 TCGA-CX-7219-01 2 79384291 79384291 A T REG3A 3'UTR 0.27 TCGA-CX-7219-01 3 138291798 138291798 G C CEP70 Intron 0.30 TCGA-CX-7219-01 3 140251315 140251315 C A CLSTN2 Silent p.G498G 0.25 TCGA-CX-7219-01 3 17084400 17084400 C T PLCL2 Missense_Mutation p.A892V 0.39 deleterious(0.02) possibly_damaging(0.721) TCGA-CX-7219-01 3 183469895 183469895 G A YEATS2 Missense_Mutation p.G335E 0.31 deleterious(0.03) benign(0.065) TCGA-CX-7219-01 3 184043328 184043328 G T EIF4G1 Nonsense_Mutation p.E1015* 0.28 TCGA-CX-7219-01 3 184045463 184045463 G C EIF4G1 Missense_Mutation p.E1258Q 0.28 deleterious(0) probably_damaging(0.941) TCGA-CX-7219-01 3 186392970 186392970 C T HRG Silent p.F244F 0.11 TCGA-CX-7219-01 3 196381413 196381413 G A NRROS Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.968) TCGA-CX-7219-01 3 47703871 47703871 G A SMARCC1 Missense_Mutation p.S704F 0.28 deleterious(0) probably_damaging(0.992) TCGA-CX-7219-01 3 56468821 56468821 G T ERC2 Nonsense_Mutation p.S72* 0.41 TCGA-CX-7219-01 4 111397718 111397718 G A ENPEP Missense_Mutation p.G50R 0.25 tolerated(0.13) benign(0.188) TCGA-CX-7219-01 4 48622739 48622739 G A FRYL Silent p.T77T 0.34 TCGA-CX-7219-01 4 84352817 84352817 C T HELQ Silent p.K765K 0.26 TCGA-CX-7219-01 4 85707147 85707147 T C WDFY3 Silent p.K1349K 0.33 TCGA-CX-7219-01 4 87968051 87968051 T C AFF1 Missense_Mutation p.S122P 0.17 tolerated(1) benign(0.018) TCGA-CX-7219-01 4 88903947 88903947 G T SPP1 Nonsense_Mutation p.E282* 0.09 TCGA-CX-7219-01 5 134033594 134033594 A G SEC24A Missense_Mutation p.I705V 0.50 tolerated(0.22) benign(0.015) TCGA-CX-7219-01 5 33937017 33937017 G T RXFP3 Missense_Mutation p.D58Y 0.42 deleterious(0) possibly_damaging(0.77) TCGA-CX-7219-01 5 36152987 36152987 G C SKP2 Silent p.L41L 0.23 TCGA-CX-7219-01 5 41058327 41058327 A T MROH2B Intron 0.30 TCGA-CX-7219-01 5 68471233 68471233 G A CCNB1 Missense_Mutation p.E318K 0.22 tolerated(0.21) benign(0.005) TCGA-CX-7219-01 5 73205674 73205674 C T ARHGEF28 Silent p.H1533H 0.50 TCGA-CX-7219-01 5 94901812 94901834 TTGTTGCCCATCACGCGCAGGTA - ARSK Splice_Site p.X80_splice 0.21 TCGA-CX-7219-01 5 96121617 96121617 G A ERAP1 Silent p.G606G 0.50 TCGA-CX-7219-01 6 101054640 101054640 G A ASCC3 Missense_Mutation p.R1674C 0.26 deleterious(0) probably_damaging(0.998) TCGA-CX-7219-01 6 136562633 136562633 G C MTFR2 Missense_Mutation p.Q155E 0.12 deleterious(0) probably_damaging(0.999) TCGA-CX-7219-01 6 26045674 26045674 C G HIST1H3C Silent p.T12T 0.19 TCGA-CX-7219-01 6 28541559 28541559 C G SCAND3 Missense_Mutation p.A703P 0.18 tolerated_low_confidence(0.15) benign(0) TCGA-CX-7219-01 6 29555789 29555789 G A OR2H2 Missense_Mutation p.R23K 0.26 tolerated(1) benign(0.002) TCGA-CX-7219-01 6 57512605 57512605 A C PRIM2 3'UTR 0.09 TCGA-CX-7219-01 6 62604557 62604557 C A KHDRBS2 Nonsense_Mutation p.E265* 0.23 TCGA-CX-7219-01 6 79607895 79607895 A G IRAK1BP1 Silent p.K209K 0.32 TCGA-CX-7219-01 6 83838721 83838721 G T DOPEY1 Missense_Mutation p.R612L 0.27 tolerated(0.22) benign(0.049) TCGA-CX-7219-01 7 104751259 104751259 T - KMT2E Frame_Shift_Del p.C1338Vfs*17 0.24 TCGA-CX-7219-01 7 107613482 107613482 C A LAMB1 Missense_Mutation p.G506V 0.35 deleterious(0) probably_damaging(1) TCGA-CX-7219-01 7 112472713 112472713 C T C7orf60 Missense_Mutation p.G164E 0.09 tolerated(0.25) benign(0.045) TCGA-CX-7219-01 7 19184751 19184751 C T FERD3L Missense_Mutation p.E79K 0.37 tolerated(0.36) benign(0.282) TCGA-CX-7219-01 7 33573768 33573768 C T BBS9 Missense_Mutation p.P834L 0.21 tolerated(0.34) benign(0.301) TCGA-CX-7219-01 7 50467751 50467751 C T IKZF1 Missense_Mutation p.P287L 0.50 deleterious(0.03) probably_damaging(0.989) TCGA-CX-7219-01 7 50534959 50534959 C A DDC Nonsense_Mutation p.E399* 0.23 TCGA-CX-7219-01 7 53104149 53104149 C - POM121L12 Frame_Shift_Del p.A263Pfs*138 0.29 TCGA-CX-7219-01 8 100147948 100147948 C T VPS13B Missense_Mutation p.S517L 0.14 tolerated(0.26) benign(0) TCGA-CX-7219-01 8 104240375 104240375 C T BAALC 3'UTR 0.55 TCGA-CX-7219-01 8 105463606 105463606 C T DPYS Missense_Mutation p.M97I 0.46 deleterious(0) benign(0.432) TCGA-CX-7219-01 8 134233036 134233036 G A WISP1 Missense_Mutation p.D188N 0.16 tolerated(0.21) benign(0.015) TCGA-CX-7219-01 8 24813495 24813495 C A CTD-2168K21.2 5'Flank 0.43 TCGA-CX-7219-01 8 86244757 86244757 G T CA1 Missense_Mutation p.Q159K 0.29 tolerated(0.25) benign(0.036) TCGA-CX-7219-01 8 8748439 8748439 G A MFHAS1 Silent p.S710S 0.11 TCGA-CX-7219-01 9 128003180 128003180 G C HSPA5 Silent p.G43G 0.07 TCGA-CX-7219-01 9 131221882 131221882 C T ODF2 Silent p.L23L 0.26 TCGA-CX-7219-01 9 134308054 134308054 C T PRRC2B Missense_Mutation p.R56C 0.49 deleterious(0) probably_damaging(1) TCGA-CX-7219-01 9 136234196 136234196 G A SURF4 Silent p.T58T 0.28 TCGA-CX-7219-01 9 15469032 15469033 - G PSIP1 Frame_Shift_Ins p.D378Gfs*2 0.27 TCGA-CX-7219-01 9 27455464 27455464 C T MOB3B Missense_Mutation p.E29K 0.20 tolerated(0.09) benign(0.008) TCGA-CX-7219-01 9 32558937 32558937 T C NDUFB6 Missense_Mutation p.I97V 0.21 tolerated(0.24) benign(0.06) TCGA-CX-7219-01 9 36599430 36599430 C T MELK Silent p.L172L 0.25 TCGA-CX-7219-01 9 71155642 71155642 C G TMEM252 Missense_Mutation p.W30S 0.31 tolerated(1) benign(0) TCGA-CX-7219-01 9 72131514 72131514 G A APBA1 Missense_Mutation p.P205S 0.19 tolerated_low_confidence(0.08) benign(0.318) TCGA-CX-7219-01 X 103359010 103359010 G C ZCCHC18 Missense_Mutation p.E70Q 0.47 tolerated(0.17) benign(0.192) TCGA-CX-7219-01 X 107331314 107331314 G A PSMD10 Missense_Mutation p.L77F 0.34 deleterious(0) probably_damaging(0.994) TCGA-CX-7219-01 X 118673662 118673662 C G CXorf56 3'UTR 0.47 TCGA-CX-7219-01 X 118673707 118673707 C G CXorf56 Missense_Mutation p.D218H 0.41 deleterious(0) probably_damaging(0.998) TCGA-CX-7219-01 X 150912370 150912370 G C CNGA2 Missense_Mutation p.E465D 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-CX-A4AQ-01 10 104359238 104359238 G A SUFU Missense_Mutation p.S320N 0.29 tolerated(0.12) benign(0.007) TCGA-CX-A4AQ-01 10 46322150 46322150 G A AGAP4 Missense_Mutation p.A402V 0.24 deleterious(0.01) possibly_damaging(0.759) TCGA-CX-A4AQ-01 10 46999998 46999998 A G GPRIN2 Missense_Mutation p.E373G 0.08 deleterious(0.04) benign(0.079) TCGA-CX-A4AQ-01 11 124794777 124794777 G A HEPACAM Missense_Mutation p.R92W 0.50 deleterious(0) probably_damaging(0.999) TCGA-CX-A4AQ-01 11 1266838 1266838 G A MUC5B Missense_Mutation p.E2910K 0.30 unknown(0) TCGA-CX-A4AQ-01 11 1268938 1268938 G A MUC5B Missense_Mutation p.E3610K 0.14 possibly_damaging(0.81) TCGA-CX-A4AQ-01 11 1782670 1782670 G A CTSD Missense_Mutation p.R33C 0.21 deleterious(0) probably_damaging(0.999) TCGA-CX-A4AQ-01 11 21592399 21592399 C T NELL1 Silent p.V690V 0.24 TCGA-CX-A4AQ-01 11 2433998 2433998 C T TRPM5 Missense_Mutation p.E781K 0.50 deleterious(0) probably_damaging(0.999) TCGA-CX-A4AQ-01 11 28311783 28311783 C T METTL15 Silent p.F146F 0.44 TCGA-CX-A4AQ-01 11 44151597 44151597 C T EXT2 Missense_Mutation p.A394V 0.41 tolerated(0.11) possibly_damaging(0.828) TCGA-CX-A4AQ-01 11 44959799 44959799 C T TP53I11 Missense_Mutation p.V30M 0.12 deleterious(0) probably_damaging(0.964) TCGA-CX-A4AQ-01 11 55579091 55579091 A T OR5L1 Missense_Mutation p.Q50L 0.21 tolerated(0.1) possibly_damaging(0.691) TCGA-CX-A4AQ-01 11 55860982 55860982 G T OR8I2 Missense_Mutation p.A67S 0.38 tolerated(1) probably_damaging(0.996) TCGA-CX-A4AQ-01 11 57070019 57070019 T C TNKS1BP1 Missense_Mutation p.S1533G 0.19 tolerated(1) benign(0) TCGA-CX-A4AQ-01 11 60230543 60230543 C T MS4A1 Silent p.I76I 0.42 TCGA-CX-A4AQ-01 11 62289209 62289209 T C AHNAK Missense_Mutation p.D4227G 0.41 possibly_damaging(0.82) TCGA-CX-A4AQ-01 12 108957838 108957838 A G ISCU Intron 0.32 TCGA-CX-A4AQ-01 12 11992150 11992153 GCCA - ETV6 Frame_Shift_Del p.P81Lfs*8 0.28 TCGA-CX-A4AQ-01 12 7188366 7188366 T A C1R Missense_Mutation p.M478L 0.28 tolerated(0.74) benign(0.001) TCGA-CX-A4AQ-01 12 80746082 80746082 C T OTOGL Missense_Mutation p.P1749L 0.23 deleterious(0.01) probably_damaging(1) TCGA-CX-A4AQ-01 12 89744605 89744605 A T DUSP6 Missense_Mutation p.S200T 0.19 tolerated(0.31) benign(0.004) TCGA-CX-A4AQ-01 12 93789270 93789270 A G NUDT4 Silent p.G72G 0.10 TCGA-CX-A4AQ-01 14 64493338 64493338 G A SYNE2 Silent p.E2098E 0.28 TCGA-CX-A4AQ-01 15 41099688 41099688 A G ZFYVE19 5'UTR 0.50 TCGA-CX-A4AQ-01 15 65995210 65995210 C T DENND4A Splice_Site p.X741_splice 0.27 TCGA-CX-A4AQ-01 15 78807440 78807440 G A HYKK Silent p.K156K 0.23 TCGA-CX-A4AQ-01 15 86273794 86273794 G C AKAP13 Missense_Mutation p.E2384Q 0.30 tolerated(0.36) probably_damaging(0.947) TCGA-CX-A4AQ-01 16 2127694 2127694 G A TSC2 Missense_Mutation p.R978H 0.18 deleterious(0.02) benign(0.052) TCGA-CX-A4AQ-01 16 2312322 2312322 C G RNPS1 Missense_Mutation p.E211D 0.25 tolerated(0.09) possibly_damaging(0.672) TCGA-CX-A4AQ-01 16 425405 425405 C T TMEM8A Missense_Mutation p.A419T 0.24 deleterious(0) possibly_damaging(0.703) TCGA-CX-A4AQ-01 16 50811745 50811745 C G CYLD Nonsense_Mutation p.S344* 0.32 TCGA-CX-A4AQ-01 16 70902541 70902541 G A HYDIN Missense_Mutation p.R3748C 0.45 probably_damaging(0.942) TCGA-CX-A4AQ-01 17 27051812 27051812 G A TLCD1 Missense_Mutation p.R154C 0.40 deleterious(0) probably_damaging(1) TCGA-CX-A4AQ-01 17 33690703 33690703 C G SLFN11 Missense_Mutation p.E42Q 0.48 tolerated(0.71) benign(0.266) TCGA-CX-A4AQ-01 17 49365466 49365466 A G UTP18 Missense_Mutation p.I469V 0.17 tolerated(0.4) benign(0.02) TCGA-CX-A4AQ-01 17 65026799 65026799 C T CACNG4 Silent p.F221F 0.42 TCGA-CX-A4AQ-01 17 65103618 65103620 ATC - HELZ In_Frame_Del p.D1636del 0.11 TCGA-CX-A4AQ-01 17 65116533 65116533 G A HELZ Nonsense_Mutation p.Q1276* 0.30 TCGA-CX-A4AQ-01 17 7577082 7577082 C A TP53 Nonsense_Mutation p.E286* 0.49 TCGA-CX-A4AQ-01 17 80206813 80206813 C T CSNK1D Missense_Mutation p.V379I 0.60 tolerated_low_confidence(0.12) benign(0.075) TCGA-CX-A4AQ-01 18 61022460 61022460 C T KDSR Missense_Mutation p.D132N 0.37 deleterious(0) benign(0.175) TCGA-CX-A4AQ-01 18 76753497 76753497 G T SALL3 Silent p.S502S 0.31 TCGA-CX-A4AQ-01 19 13007751 13007751 C T GCDH Missense_Mutation p.R294W 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-CX-A4AQ-01 19 16923646 16923655 TGGAGTGTGC - NWD1 Intron 0.17 TCGA-CX-A4AQ-01 19 20296808 20296808 C G ZNF486 Missense_Mutation p.S57C 0.13 deleterious(0.03) probably_damaging(0.984) TCGA-CX-A4AQ-01 19 36279204 36279204 G C ARHGAP33 Missense_Mutation p.G1085A 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.897) TCGA-CX-A4AQ-01 19 44377478 44377478 C T ZNF404 Silent p.E296E 0.37 TCGA-CX-A4AQ-01 1 120464983 120464983 C - NOTCH2 Frame_Shift_Del p.V1697* 0.20 TCGA-CX-A4AQ-01 1 144854605 144854605 G A PDE4DIP Nonsense_Mutation p.Q2289* 0.11 TCGA-CX-A4AQ-01 1 153516297 153516297 T C S100A4 Missense_Mutation p.I82V 0.28 tolerated(0.24) benign(0) TCGA-CX-A4AQ-01 1 156566266 156566266 G T GPATCH4 Missense_Mutation p.A118D 0.30 deleterious(0) probably_damaging(0.988) TCGA-CX-A4AQ-01 1 161654748 161654748 C T RPL31P11 RNA 0.38 TCGA-CX-A4AQ-01 1 163295850 163295850 T A NUF2 Silent p.T3T 0.26 TCGA-CX-A4AQ-01 1 175372390 175372390 C T TNR Missense_Mutation p.V288I 0.38 tolerated(0.29) benign(0.001) TCGA-CX-A4AQ-01 1 177133672 177133672 G C ASTN1 Missense_Mutation p.F47L 0.12 tolerated_low_confidence(0.1) probably_damaging(0.961) TCGA-CX-A4AQ-01 1 203453090 203453090 G A PRELP Missense_Mutation p.G260R 0.25 deleterious(0.03) benign(0.366) TCGA-CX-A4AQ-01 1 22418101 22418101 C T CDC42 3'UTR 0.43 TCGA-CX-A4AQ-01 1 231344819 231344819 G A TRIM67 Missense_Mutation p.G649D 0.31 deleterious(0) probably_damaging(1) TCGA-CX-A4AQ-01 1 23688749 23688749 G A ZNF436 Missense_Mutation p.H376Y 0.31 tolerated(1) benign(0.127) TCGA-CX-A4AQ-01 1 23689182 23689182 G C ZNF436 Missense_Mutation p.F231L 0.43 deleterious(0.02) probably_damaging(0.98) TCGA-CX-A4AQ-01 1 248685628 248685628 G A OR2G6 Silent p.R227R 0.29 TCGA-CX-A4AQ-01 1 31478756 31478774 CCATGCTAACGCCTAGTCC - PUM1 Frame_Shift_Del p.G216Wfs*5 0.21 TCGA-CX-A4AQ-01 1 40349133 40349133 G T TRIT1 Missense_Mutation p.P11T 0.17 tolerated_low_confidence(0.24) benign(0.002) TCGA-CX-A4AQ-01 1 46206944 46206944 T A IPP Missense_Mutation p.Q118L 0.28 deleterious(0.02) benign(0.085) TCGA-CX-A4AQ-01 1 86047778 86047778 C T CYR61 Missense_Mutation p.R149W 0.31 deleterious(0) probably_damaging(1) TCGA-CX-A4AQ-01 20 36841655 36841655 C A KIAA1755 Missense_Mutation p.G1131V 0.29 deleterious(0) possibly_damaging(0.813) TCGA-CX-A4AQ-01 20 44531153 44531153 A G PLTP Missense_Mutation p.S345P 0.30 deleterious(0.02) possibly_damaging(0.877) TCGA-CX-A4AQ-01 21 34067440 34067440 C A SYNJ1 Missense_Mutation p.R250L 0.30 deleterious(0) probably_damaging(1) TCGA-CX-A4AQ-01 21 40670254 40670254 T C BRWD1 Intron 0.32 TCGA-CX-A4AQ-01 22 19419031 19419031 G A HIRA 5'UTR 0.21 TCGA-CX-A4AQ-01 22 22989341 22989341 C T GGTLC2 Silent p.F98F 0.47 TCGA-CX-A4AQ-01 22 29886714 29886714 G A NEFH 3'UTR 0.35 TCGA-CX-A4AQ-01 2 125262112 125262112 C G CNTNAP5 Missense_Mutation p.R435G 0.46 tolerated(0.42) benign(0.006) TCGA-CX-A4AQ-01 2 16769350 16769350 T G FAM49A Missense_Mutation p.E13A 0.27 tolerated(0.22) benign(0.004) TCGA-CX-A4AQ-01 2 17696515 17696515 A G RAD51AP2 Silent p.N1056N 0.41 TCGA-CX-A4AQ-01 2 179569383 179569383 T A TTN Missense_Mutation p.E9939V 0.18 TCGA-CX-A4AQ-01 2 208632054 208632054 G A FZD5 Silent p.Y470Y 0.24 TCGA-CX-A4AQ-01 2 21246459 21246459 T A APOB Missense_Mutation p.I848L 0.32 benign(0.005) TCGA-CX-A4AQ-01 2 220435066 220435066 C G OBSL1 Missense_Mutation p.D297H 0.20 deleterious(0) probably_damaging(1) TCGA-CX-A4AQ-01 2 33774785 33774785 C G RASGRP3 Silent p.L503L 0.21 TCGA-CX-A4AQ-01 2 33774797 33774797 C T RASGRP3 Silent p.F507F 0.29 TCGA-CX-A4AQ-01 2 86338237 86338237 G T PTCD3 Missense_Mutation p.D66Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-CX-A4AQ-01 3 113878602 113878602 C T DRD3 Missense_Mutation p.R128K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-CX-A4AQ-01 3 118865871 118865871 G A C3orf30 Missense_Mutation p.A279T 0.32 deleterious(0.04) probably_damaging(0.987) TCGA-CX-A4AQ-01 3 135869816 135869816 T A MSL2 3'UTR 0.33 TCGA-CX-A4AQ-01 3 14939513 14939513 C T FGD5 Missense_Mutation p.H993Y 0.51 tolerated(1) possibly_damaging(0.815) TCGA-CX-A4AQ-01 3 17131382 17131382 C T PLCL2 Missense_Mutation p.A995V 0.41 deleterious_low_confidence(0.05) benign(0.199) TCGA-CX-A4AQ-01 3 172835116 172835116 G A SPATA16 Missense_Mutation p.R136C 0.30 deleterious(0.01) benign(0.063) TCGA-CX-A4AQ-01 3 57136546 57136546 C T IL17RD Missense_Mutation p.A314T 0.37 deleterious(0.01) benign(0.434) TCGA-CX-A4AQ-01 3 73440229 73440229 C T PDZRN3 Silent p.L431L 0.36 TCGA-CX-A4AQ-01 3 93781817 93781817 G A NSUN3 5'UTR 0.19 TCGA-CX-A4AQ-01 3 9831513 9831513 C T TADA3 Silent p.P114P 0.42 TCGA-CX-A4AQ-01 4 118006319 118006319 G C TRAM1L1 Silent p.V77V 0.43 TCGA-CX-A4AQ-01 4 120241875 120241875 C G FABP2 Missense_Mutation p.E64Q 0.37 tolerated(0.46) benign(0.109) TCGA-CX-A4AQ-01 4 141543760 141543760 C T TBC1D9 Missense_Mutation p.M1130I 0.24 tolerated_low_confidence(0.14) benign(0.08) TCGA-CX-A4AQ-01 4 39246165 39246165 A G WDR19 Missense_Mutation p.K880E 0.27 deleterious(0.01) benign(0.283) TCGA-CX-A4AQ-01 4 68619758 68619758 C T GNRHR Missense_Mutation p.G99E 0.33 deleterious(0) probably_damaging(0.959) TCGA-CX-A4AQ-01 4 8229851 8229851 G T SH3TC1 Silent p.T810T 0.42 TCGA-CX-A4AQ-01 4 99182645 99182645 G A RAP1GDS1 5'Flank 0.36 TCGA-CX-A4AQ-01 5 140474771 140474771 C A PCDHB2 Missense_Mutation p.P133T 0.41 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-CX-A4AQ-01 5 140573817 140573817 G A PCDHB10 Silent p.P564P 0.18 TCGA-CX-A4AQ-01 5 23526949 23526949 G A PRDM9 Silent p.E584E 0.21 TCGA-CX-A4AQ-01 5 34005991 34005991 T C AMACR Silent p.K87K 0.31 TCGA-CX-A4AQ-01 5 41862853 41862853 C A OXCT1 Splice_Site p.X27_splice 0.46 TCGA-CX-A4AQ-01 5 7709416 7709416 G A ADCY2 Silent p.L498L 0.32 TCGA-CX-A4AQ-01 5 95734729 95734729 G T PCSK1 Missense_Mutation p.A481D 0.14 tolerated(0.11) benign(0.093) TCGA-CX-A4AQ-01 6 12164516 12164516 C T HIVEP1 Missense_Mutation p.T2660M 0.40 tolerated(0.08) benign(0.014) TCGA-CX-A4AQ-01 6 26157199 26157199 T C HIST1H1E Missense_Mutation p.V194A 0.36 tolerated(0.32) unknown(0) TCGA-CX-A4AQ-01 6 27879751 27879751 G T OR2B2 Missense_Mutation p.A116D 0.26 deleterious(0) possibly_damaging(0.71) TCGA-CX-A4AQ-01 6 28502030 28502030 C G GPX5 3'UTR 0.26 TCGA-CX-A4AQ-01 6 33405967 33405967 C T SYNGAP1 Missense_Mutation p.R429W 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-CX-A4AQ-01 6 34846288 34846288 C A TAF11 3'UTR 0.41 TCGA-CX-A4AQ-01 6 46678285 46678285 C A PLA2G7 Silent p.L258L 0.27 TCGA-CX-A4AQ-01 6 46993670 46993686 CTCAAATCTCTTTTCTC - GPR110 Frame_Shift_Del p.E61Kfs*18 0.33 TCGA-CX-A4AQ-01 6 79911328 79911328 C A HMGN3 3'UTR 0.34 TCGA-CX-A4AQ-01 7 103341355 103341355 A G RELN Splice_Site p.X301_splice 0.25 TCGA-CX-A4AQ-01 7 11676205 11676205 G C THSD7A Missense_Mutation p.Q192E 0.29 deleterious(0.01) benign(0.017) TCGA-CX-A4AQ-01 7 142510484 142510484 G T TRBV30 Missense_Mutation p.T41N 0.30 tolerated(0.07) possibly_damaging(0.825) TCGA-CX-A4AQ-01 7 44185127 44185127 C T GCK Missense_Mutation p.V409M 0.22 deleterious(0.02) probably_damaging(0.952) TCGA-CX-A4AQ-01 7 66767786 66767786 C T STAG3L4 RNA 0.37 TCGA-CX-A4AQ-01 8 139601575 139601575 G A COL22A1 Missense_Mutation p.P1601L 0.09 unknown(0) TCGA-CX-A4AQ-01 8 144891092 144891092 C T SCRIB Missense_Mutation p.R601Q 0.43 probably_damaging(0.998) TCGA-CX-A4AQ-01 8 20107284 20107284 G T LZTS1 Missense_Mutation p.D580E 0.30 tolerated(0.26) benign(0.006) TCGA-CX-A4AQ-01 9 135553821 135553821 G T GTF3C4 Missense_Mutation p.G272V 0.42 tolerated(0.14) possibly_damaging(0.809) TCGA-CX-A4AQ-01 9 78799654 78799654 G A PCSK5 Missense_Mutation p.E755K 0.23 deleterious(0) probably_damaging(0.999) TCGA-CX-A4AQ-01 9 84531209 84531209 C T SPATA31D5P RNA 0.20 TCGA-CX-A4AQ-01 9 84532854 84532854 C T SPATA31D5P RNA 0.53 TCGA-CX-A4AQ-01 X 140271160 140271160 T C LDOC1 Missense_Mutation p.H16R 0.65 tolerated(0.09) possibly_damaging(0.702) TCGA-CX-A4AQ-01 X 142795488 142795488 T G SPANXN2 Missense_Mutation p.N64H 0.59 tolerated(0.57) benign(0.191) TCGA-CX-A4AQ-01 X 18748380 18748380 C T PPEF1 Missense_Mutation p.T43I 0.68 deleterious(0.01) possibly_damaging(0.459) TCGA-CX-A4AQ-01 X 47100675 47100675 G T USP11 Splice_Site p.X326_splice 0.61 TCGA-CX-A4AQ-01 X 54784569 54784569 G A ITIH6 Silent p.S646S 0.60 TCGA-CX-A4AQ-01 X 91090423 91090423 C A PCDH11X 5'UTR 0.53 TCGA-D6-6515-01 12 53233611 53233611 G A KRT78 Missense_Mutation p.T402M 0.13 tolerated(0.06) benign(0.259) TCGA-D6-6515-01 12 58221344 58221344 C A CTDSP2 Missense_Mutation p.Q81H 0.10 tolerated(0.55) benign(0.001) TCGA-D6-6515-01 12 63977699 63977699 C G DPY19L2 Intron 0.30 TCGA-D6-6515-01 12 7636017 7636017 G A CD163 Missense_Mutation p.R1012C 0.12 deleterious(0) possibly_damaging(0.738) TCGA-D6-6515-01 13 114751137 114751137 T C RASA3 Missense_Mutation p.E793G 0.08 tolerated(0.1) benign(0.285) TCGA-D6-6515-01 13 37679304 37679304 G A CSNK1A1L Silent p.D30D 0.06 TCGA-D6-6515-01 13 99042297 99042297 C A FARP1 Silent p.A314A 0.04 TCGA-D6-6515-01 14 71205084 71205084 G A MAP3K9 Silent p.G574G 0.12 TCGA-D6-6515-01 14 95921870 95921870 G C SYNE3 Silent p.L327L 0.09 TCGA-D6-6515-01 15 50215663 50215663 A C ATP8B4 Silent p.L557L 0.08 TCGA-D6-6515-01 15 56393703 56393703 G T RFX7 Missense_Mutation p.A222D 0.15 deleterious(0) probably_damaging(0.999) TCGA-D6-6515-01 16 15841500 15841500 C T MYH11 Missense_Mutation p.E787K 0.12 probably_damaging(0.992) TCGA-D6-6515-01 16 1815178 1815178 C T MAPK8IP3 Silent p.P814P 0.14 TCGA-D6-6515-01 16 26147117 26147117 G A HS3ST4 Missense_Mutation p.E307K 0.10 tolerated(0.14) possibly_damaging(0.859) TCGA-D6-6515-01 16 546835 546835 G A RAB11FIP3 Missense_Mutation p.R426Q 0.11 tolerated(0.09) benign(0.14) TCGA-D6-6515-01 16 57206187 57206189 TTC - FAM192A In_Frame_Del p.E108del 0.08 TCGA-D6-6515-01 16 67213451 67213451 C G KIAA0895L Silent p.L243L 0.09 TCGA-D6-6515-01 17 26874302 26874302 G A UNC119 3'UTR 0.12 TCGA-D6-6515-01 17 39340710 39340710 G A KRTAP4-1 Missense_Mutation p.R133C 0.05 deleterious(0.01) unknown(0) TCGA-D6-6515-01 17 48917985 48917985 C T WFIKKN2 Missense_Mutation p.R446W 0.10 deleterious(0) possibly_damaging(0.487) TCGA-D6-6515-01 17 62857035 62857035 G A LRRC37A3 Missense_Mutation p.R1077W 0.08 deleterious(0) benign(0.414) TCGA-D6-6515-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.20 tolerated(0.13) possibly_damaging(0.631) TCGA-D6-6515-01 19 14508888 14508888 C T CD97 Silent p.F278F 0.05 TCGA-D6-6515-01 19 17373676 17373676 C T USHBP1 Silent p.V109V 0.12 TCGA-D6-6515-01 19 43965777 43965777 G A LYPD3 Missense_Mutation p.T256I 0.13 tolerated(0.06) benign(0.013) TCGA-D6-6515-01 19 54418666 54418666 G A CACNG7 Missense_Mutation p.V111M 0.14 tolerated(0.41) benign(0.03) TCGA-D6-6515-01 19 56466997 56466997 C T NLRP8 Nonsense_Mutation p.Q525* 0.04 TCGA-D6-6515-01 19 7531842 7531842 C T ARHGEF18 Silent p.P793P 0.13 TCGA-D6-6515-01 1 1117129 1117129 A T TTLL10 Missense_Mutation p.K255M 0.20 deleterious(0) possibly_damaging(0.781) TCGA-D6-6515-01 1 150202922 150202922 C G ANP32E Missense_Mutation p.S104T 0.09 tolerated(0.07) benign(0.087) TCGA-D6-6515-01 1 154947327 154947327 G A CKS1B Intron 0.09 TCGA-D6-6515-01 1 65306941 65306941 C T JAK1 Missense_Mutation p.R879H 0.10 deleterious(0) possibly_damaging(0.875) TCGA-D6-6515-01 1 76365359 76365359 G A MSH4 Missense_Mutation p.E863K 0.10 tolerated(0.46) benign(0.016) TCGA-D6-6515-01 20 47863942 47863942 C T ZNFX1 Silent p.K1873K 0.14 TCGA-D6-6515-01 20 746115 746115 C T SLC52A3 Missense_Mutation p.G102S 0.23 tolerated(0.79) benign(0.001) TCGA-D6-6515-01 21 34399432 34399432 T G OLIG2 Missense_Mutation p.S88A 0.22 tolerated(0.34) benign(0.003) TCGA-D6-6515-01 2 191843715 191843715 G A STAT1 Silent p.G580G 0.11 TCGA-D6-6515-01 2 197763049 197763049 G A PGAP1 Silent p.S284S 0.13 TCGA-D6-6515-01 2 21233487 21233487 G A APOB Nonsense_Mutation p.R2085* 0.09 TCGA-D6-6515-01 2 61456687 61456687 C G USP34 Missense_Mutation p.D2399H 0.08 deleterious(0.01) possibly_damaging(0.547) TCGA-D6-6515-01 2 85536379 85536379 G A TCF7L1 Missense_Mutation p.A521T 0.21 tolerated_low_confidence(0.25) benign(0.009) TCGA-D6-6515-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.14 deleterious(0.02) probably_damaging(0.959) TCGA-D6-6515-01 4 119621745 119621745 C T METTL14 Missense_Mutation p.S229L 0.12 deleterious(0) benign(0.196) TCGA-D6-6515-01 4 126372350 126372350 C T FAT4 Silent p.V3393V 0.11 TCGA-D6-6515-01 4 156277012 156277012 C T MAP9 Silent p.K382K 0.09 TCGA-D6-6515-01 4 177146412 177146412 C T ASB5 Splice_Site p.X92_splice 0.09 TCGA-D6-6515-01 4 98893492 98893492 G A STPG2 Missense_Mutation p.P291L 0.04 deleterious(0) possibly_damaging(0.826) TCGA-D6-6515-01 5 114916440 114916440 G A TMED7-TICAM2 Missense_Mutation p.P341S 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-D6-6515-01 5 140908785 140908785 T C DIAPH1 Missense_Mutation p.K911R 0.09 benign(0.168) TCGA-D6-6515-01 5 177548577 177548577 C T N4BP3 Nonsense_Mutation p.Q404* 0.13 TCGA-D6-6515-01 5 41199881 41199881 C T C6 Missense_Mutation p.R145H 0.12 tolerated(0.08) possibly_damaging(0.875) TCGA-D6-6515-01 5 98218909 98218909 T C CHD1 Silent p.G867G 0.06 TCGA-D6-6515-01 8 113241099 113241099 G T CSMD3 Nonsense_Mutation p.S3617* 0.08 TCGA-D6-6515-01 8 19190591 19190591 C T SH2D4A Missense_Mutation p.R103W 0.10 deleterious(0.05) benign(0.043) TCGA-D6-6515-01 X 128615129 128615129 G A SMARCA1 Nonsense_Mutation p.R751* 0.18 TCGA-D6-6515-01 X 152226306 152226306 A G PNMA3 Silent p.L298L 0.08 TCGA-D6-6515-01 X 44703847 44703847 G A DUSP21 Missense_Mutation p.E157K 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6515-01 X 47308645 47308646 - T ZNF41 Frame_Shift_Ins p.I175Nfs*13 0.11 TCGA-D6-6515-01 X 51238820 51238820 C T NUDT11 Silent p.S159S 0.10 TCGA-D6-6515-01 X 91133558 91133558 T A PCDH11X Missense_Mutation p.N773K 0.10 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 10 100016640 100016640 C T LOXL4 Missense_Mutation p.G442E 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-D6-6516-01 10 100174846 100174846 G A PYROXD2 Missense_Mutation p.P16L 0.26 tolerated_low_confidence(0.13) benign(0.002) TCGA-D6-6516-01 10 100174847 100174847 G A PYROXD2 Missense_Mutation p.P16S 0.26 tolerated_low_confidence(0.25) benign(0.001) TCGA-D6-6516-01 10 100179847 100179847 C T HPS1 Silent p.E604E 0.36 TCGA-D6-6516-01 10 101163324 101163324 C T GOT1 Silent p.Q287Q 0.39 TCGA-D6-6516-01 10 101556903 101556903 G A ABCC2 Missense_Mutation p.E228K 0.58 tolerated(0.09) benign(0.271) TCGA-D6-6516-01 10 101816815 101816815 C T CPN1 Silent p.R322R 0.66 TCGA-D6-6516-01 10 101816816 101816816 C T CPN1 Missense_Mutation p.R322Q 0.66 tolerated(0.69) benign(0.061) TCGA-D6-6516-01 10 101824951 101824951 G A CPN1 Silent p.F251F 0.59 TCGA-D6-6516-01 10 101982730 101982730 G A CHUK Missense_Mutation p.H70Y 0.68 deleterious(0) probably_damaging(0.91) TCGA-D6-6516-01 10 102120711 102120711 C T SCD 3'UTR 0.18 TCGA-D6-6516-01 10 102249490 102249490 T A SEC31B Silent p.P998P 0.15 TCGA-D6-6516-01 10 103920272 103920272 C T NOLC1 Missense_Mutation p.S388L 0.25 tolerated_low_confidence(0.33) benign(0.307) TCGA-D6-6516-01 10 104173829 104173829 C T PSD Missense_Mutation p.G417D 0.24 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 10 104573147 104573147 G A WBP1L 3'UTR 0.70 TCGA-D6-6516-01 10 105139526 105139526 C G TAF5 Missense_Mutation p.N425K 0.27 tolerated(0.05) benign(0.131) TCGA-D6-6516-01 10 105362544 105362544 G A SH3PXD2A Missense_Mutation p.P783S 0.21 tolerated(1) benign(0.003) TCGA-D6-6516-01 10 105807536 105807536 G A COL17A1 Missense_Mutation p.R766C 0.56 probably_damaging(0.997) TCGA-D6-6516-01 10 105807537 105807537 G A COL17A1 Silent p.I765I 0.56 TCGA-D6-6516-01 10 106937726 106937726 G A SORCS3 Intron 0.33 TCGA-D6-6516-01 10 106970961 106970961 C T SORCS3 Silent p.S776S 0.19 TCGA-D6-6516-01 10 118350533 118350533 C T PNLIPRP1 5'UTR 0.23 TCGA-D6-6516-01 10 118661444 118661444 G A KIAA1598 Missense_Mutation p.S502L 0.12 tolerated(0.17) probably_damaging(0.99) TCGA-D6-6516-01 10 12219884 12219884 G A NUDT5 Missense_Mutation p.P66L 0.15 deleterious(0.04) probably_damaging(0.91) TCGA-D6-6516-01 10 122660595 122660595 T G WDR11 Missense_Mutation p.L891W 0.28 deleterious(0) possibly_damaging(0.765) TCGA-D6-6516-01 10 122660596 122660596 G T WDR11 Missense_Mutation p.L891F 0.29 tolerated(0.05) benign(0.036) TCGA-D6-6516-01 10 122662636 122662636 G A WDR11 Silent p.Q941Q 0.14 TCGA-D6-6516-01 10 122662637 122662637 G A WDR11 Missense_Mutation p.E942K 0.13 tolerated(0.58) benign(0.004) TCGA-D6-6516-01 10 124345745 124345745 C T DMBT1 Silent p.A543A 0.25 TCGA-D6-6516-01 10 126523370 126523370 C T FAM175B Missense_Mutation p.P360S 0.33 tolerated_low_confidence(0.37) benign(0.006) TCGA-D6-6516-01 10 132891356 132891356 C T TCERG1L 3'UTR 0.24 TCGA-D6-6516-01 10 132891379 132891379 G A TCERG1L 3'UTR 0.19 TCGA-D6-6516-01 10 134016234 134016234 G T DPYSL4 Missense_Mutation p.D456Y 0.57 deleterious(0.02) benign(0.108) TCGA-D6-6516-01 10 134016249 134016249 G T DPYSL4 Missense_Mutation p.V461F 0.35 deleterious(0) benign(0.271) TCGA-D6-6516-01 10 134942170 134942170 G A GPR123 Missense_Mutation p.G280S 0.68 tolerated(0.2) probably_damaging(0.973) TCGA-D6-6516-01 10 135369503 135369503 C T SYCE1 Missense_Mutation p.E193K 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6516-01 10 16948290 16948290 C T CUBN Silent p.Q2608Q 0.08 TCGA-D6-6516-01 10 25878064 25878064 C T GPR158 Missense_Mutation p.H628Y 0.22 tolerated(0.07) benign(0.306) TCGA-D6-6516-01 10 26518694 26518694 C T GAD2 Silent p.F276F 0.39 TCGA-D6-6516-01 10 27324456 27324456 T A ANKRD26 Missense_Mutation p.N975Y 0.35 deleterious(0) possibly_damaging(0.742) TCGA-D6-6516-01 10 27687894 27687894 C T PTCHD3 Missense_Mutation p.E545K 0.21 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 10 27964118 27964118 C T MKX 3'UTR 0.37 TCGA-D6-6516-01 10 27964119 27964119 C T MKX 3'UTR 0.37 TCGA-D6-6516-01 10 30315322 30315322 C T KIAA1462 Missense_Mutation p.R1252K 0.19 tolerated(0.11) possibly_damaging(0.69) TCGA-D6-6516-01 10 33208967 33208967 C T ITGB1 Missense_Mutation p.D439N 0.35 tolerated(0.66) benign(0.001) TCGA-D6-6516-01 10 33217084 33217084 A C ITGB1 Missense_Mutation p.V162G 0.23 deleterious(0) probably_damaging(0.983) TCGA-D6-6516-01 10 44052301 44052301 C T ZNF239 Silent p.G409G 0.13 TCGA-D6-6516-01 10 48390169 48390169 C T RBP3 Missense_Mutation p.G237S 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6516-01 10 48428967 48428967 C T GDF10 Missense_Mutation p.D307N 0.18 tolerated(0.16) benign(0.219) TCGA-D6-6516-01 10 5498571 5498571 C T NET1 Missense_Mutation p.R469C 0.16 deleterious(0.04) probably_damaging(0.987) TCGA-D6-6516-01 10 5966446 5966446 C T FBXO18 Silent p.C908C 0.25 TCGA-D6-6516-01 10 63851606 63851606 C T ARID5B Missense_Mutation p.P795L 0.54 deleterious(0.01) benign(0.053) TCGA-D6-6516-01 10 64974629 64974629 G A JMJD1C Missense_Mutation p.P433L 0.40 deleterious_low_confidence(0) benign(0.027) TCGA-D6-6516-01 10 6540382 6540382 C A PRKCQ Missense_Mutation p.C173F 0.22 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 10 67862933 67862933 G A CTNNA3 Silent p.T653T 0.22 TCGA-D6-6516-01 10 70190226 70190226 G A DNA2 Silent p.S811S 0.31 TCGA-D6-6516-01 10 70998852 70998852 G A HKDC1 Missense_Mutation p.D184N 0.53 tolerated(0.17) possibly_damaging(0.786) TCGA-D6-6516-01 10 7214518 7214518 G A SFMBT2 Missense_Mutation p.S697F 0.18 tolerated(0.08) possibly_damaging(0.729) TCGA-D6-6516-01 10 73570315 73570315 G A CDH23 Silent p.L782L 0.51 TCGA-D6-6516-01 10 79581719 79581719 G A DLG5 Silent p.S841S 0.53 TCGA-D6-6516-01 10 79581720 79581720 G A DLG5 Missense_Mutation p.S841F 0.52 deleterious(0) benign(0.429) TCGA-D6-6516-01 10 84498353 84498353 G A NRG3 Missense_Mutation p.G325E 0.61 deleterious(0) probably_damaging(0.982) TCGA-D6-6516-01 10 84745339 84745339 G A NRG3 Missense_Mutation p.R690K 0.19 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-D6-6516-01 10 88260013 88260013 C T WAPAL Silent p.S329S 0.18 TCGA-D6-6516-01 10 98157001 98157001 C T TLL2 Nonsense_Mutation p.W442* 0.54 TCGA-D6-6516-01 10 99968599 99968599 C T R3HCC1L Missense_Mutation p.S243F 0.74 deleterious(0) probably_damaging(0.973) TCGA-D6-6516-01 10 99968919 99968919 C T R3HCC1L Missense_Mutation p.P350S 0.17 tolerated(1) benign(0.001) TCGA-D6-6516-01 11 1018644 1018644 G T MUC6 Missense_Mutation p.T1386K 0.17 unknown(0) TCGA-D6-6516-01 11 102567462 102567462 C T MMP27 Missense_Mutation p.D242N 0.17 tolerated(0.07) benign(0.023) TCGA-D6-6516-01 11 102825319 102825319 G A MMP13 Missense_Mutation p.P127S 0.27 tolerated(0.07) benign(0.042) TCGA-D6-6516-01 11 103006531 103006531 C T DYNC2H1 Missense_Mutation p.P810S 0.13 probably_damaging(1) TCGA-D6-6516-01 11 104776209 104776209 G A RP11-693N9.2 RNA 0.20 TCGA-D6-6516-01 11 104878062 104878062 C T CASP5 Splice_Site p.X74_splice 0.12 TCGA-D6-6516-01 11 105789574 105789574 A T GRIA4 Missense_Mutation p.D469V 0.26 deleterious(0) probably_damaging(0.991) TCGA-D6-6516-01 11 108031734 108031734 C T NPAT Missense_Mutation p.R1360K 0.19 tolerated(0.17) benign(0.253) TCGA-D6-6516-01 11 108276232 108276232 G A C11orf65 Missense_Mutation p.H162Y 0.17 deleterious(0) probably_damaging(0.977) TCGA-D6-6516-01 11 113631062 113631062 G A ZW10 Missense_Mutation p.S150F 0.20 deleterious(0.04) benign(0.367) TCGA-D6-6516-01 11 114392934 114392934 C G NXPE1 Missense_Mutation p.R325T 0.38 deleterious(0) probably_damaging(0.989) TCGA-D6-6516-01 11 114568989 114568989 C T NXPE2 Missense_Mutation p.P119S 0.28 deleterious(0.05) possibly_damaging(0.859) TCGA-D6-6516-01 11 1156179 1156179 C T MUC5AC Silent p.V168V 0.13 TCGA-D6-6516-01 11 1156180 1156180 C T MUC5AC Missense_Mutation p.L169F 0.14 tolerated(0.14) benign(0.034) TCGA-D6-6516-01 11 116631629 116631629 G A BUD13 Missense_Mutation p.P359L 0.17 deleterious(0) benign(0.183) TCGA-D6-6516-01 11 117301448 117301448 C T DSCAML1 Silent p.R1952R 0.13 TCGA-D6-6516-01 11 118111019 118111019 C T MPZL3 Silent p.K49K 0.28 TCGA-D6-6516-01 11 118133656 118133656 G A MPZL2 Missense_Mutation p.P72L 0.30 tolerated(0.21) benign(0.077) TCGA-D6-6516-01 11 118390382 118390382 C T KMT2A Silent p.F3732F 0.37 TCGA-D6-6516-01 11 118889449 118889449 C T TRAPPC4 5'UTR 0.19 TCGA-D6-6516-01 11 119005131 119005131 G A HINFP Missense_Mutation p.A493T 0.12 tolerated(0.35) benign(0.001) TCGA-D6-6516-01 11 119044583 119044583 C T NLRX1 Missense_Mutation p.P209S 0.35 tolerated(0.08) benign(0.329) TCGA-D6-6516-01 11 119052950 119052950 C T NLRX1 Silent p.N834N 0.17 TCGA-D6-6516-01 11 119183335 119183335 C T MCAM Missense_Mutation p.E255K 0.13 tolerated(0.28) probably_damaging(0.997) TCGA-D6-6516-01 11 120347993 120347993 T A ARHGEF12 Nonsense_Mutation p.L1144* 0.40 TCGA-D6-6516-01 11 121008716 121008716 C A TECTA Nonsense_Mutation p.Y1176* 0.19 TCGA-D6-6516-01 11 12257762 12257762 G A MICAL2 Silent p.R678R 0.20 TCGA-D6-6516-01 11 123755988 123755988 G T TMEM225 Missense_Mutation p.P49T 0.31 deleterious(0) probably_damaging(0.975) TCGA-D6-6516-01 11 123887148 123887148 G A OR10G4 Silent p.L289L 0.10 TCGA-D6-6516-01 11 123894355 123894355 G A OR10G9 Silent p.L212L 0.33 TCGA-D6-6516-01 11 123900446 123900446 G A OR10G8 Silent p.G39G 0.30 TCGA-D6-6516-01 11 123901244 123901244 A T OR10G8 Silent p.V305V 0.13 TCGA-D6-6516-01 11 124180597 124180597 C A OR8D1 Missense_Mutation p.E22D 0.13 tolerated(0.16) possibly_damaging(0.524) TCGA-D6-6516-01 11 124487183 124487183 C T PANX3 Missense_Mutation p.S113F 0.14 deleterious(0.03) possibly_damaging(0.835) TCGA-D6-6516-01 11 124829770 124829770 G A CCDC15 Silent p.R129R 0.19 TCGA-D6-6516-01 11 125267805 125267805 G T PKNOX2 Silent p.L145L 0.09 TCGA-D6-6516-01 11 125769334 125769334 C T HYLS1 Missense_Mutation p.A24V 0.08 deleterious(0.01) possibly_damaging(0.789) TCGA-D6-6516-01 11 128426323 128426323 C T ETS1 Missense_Mutation p.G26E 0.18 deleterious_low_confidence(0.04) benign(0.376) TCGA-D6-6516-01 11 128628073 128628073 C T FLI1 Missense_Mutation p.H28Y 0.19 deleterious(0.02) benign(0.232) TCGA-D6-6516-01 11 128638162 128638162 C T FLI1 Missense_Mutation p.P127L 0.19 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 11 129321357 129321357 G T BARX2 3'UTR 0.25 TCGA-D6-6516-01 11 129802048 129802048 G A PRDM10 Silent p.I412I 0.20 TCGA-D6-6516-01 11 132016247 132016247 A T NTM Missense_Mutation p.D80V 0.08 deleterious(0) probably_damaging(0.994) TCGA-D6-6516-01 11 132306111 132306111 C T OPCML Missense_Mutation p.G269E 0.14 deleterious(0) probably_damaging(0.982) TCGA-D6-6516-01 11 134244922 134244922 C T GLB1L2 Silent p.P627P 0.31 TCGA-D6-6516-01 11 1643054 1643054 G A KRTAP5-4 Silent p.G90G 0.14 TCGA-D6-6516-01 11 18267524 18267524 G A SAA2 Missense_Mutation p.H55Y 0.16 tolerated(0.14) probably_damaging(0.999) TCGA-D6-6516-01 11 1856328 1856328 G A SYT8 Missense_Mutation p.G12D 0.17 deleterious(0.03) benign(0.055) TCGA-D6-6516-01 11 22296187 22296187 A C ANO5 Missense_Mutation p.T770P 0.18 tolerated(0.25) possibly_damaging(0.485) TCGA-D6-6516-01 11 22360018 22360018 C T SLC17A6 5'UTR 0.17 TCGA-D6-6516-01 11 22360019 22360019 C T SLC17A6 5'UTR 0.20 TCGA-D6-6516-01 11 22364834 22364834 C T SLC17A6 Silent p.I127I 0.14 TCGA-D6-6516-01 11 2428000 2428000 C T TRPM5 Missense_Mutation p.D1048N 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-D6-6516-01 11 26582706 26582706 G A MUC15 Missense_Mutation p.P331L 0.24 deleterious(0) benign(0.187) TCGA-D6-6516-01 11 30928123 30928123 G A DCDC1 Silent p.F1356F 0.28 TCGA-D6-6516-01 11 3109443 3109443 G A OSBPL5 Missense_Mutation p.L878F 0.28 tolerated(0.58) benign(0.047) TCGA-D6-6516-01 11 31115636 31115636 C T DCDC1 Silent p.S693S 0.21 TCGA-D6-6516-01 11 32705047 32705047 C T CCDC73 Intron 0.09 TCGA-D6-6516-01 11 34477639 34477639 C T CAT Missense_Mutation p.L265F 0.17 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 11 3681448 3681448 C T ART1 Silent p.S233S 0.18 TCGA-D6-6516-01 11 3838688 3838688 C T PGAP2 Missense_Mutation p.P91S 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-D6-6516-01 11 4095781 4095781 C T STIM1 Missense_Mutation p.H281Y 0.36 tolerated(0.07) benign(0.255) TCGA-D6-6516-01 11 432045 432045 G A ANO9 Silent p.I120I 0.14 TCGA-D6-6516-01 11 45274137 45274137 G A SYT13 Silent p.L227L 0.26 TCGA-D6-6516-01 11 45919661 45919661 G A MAPK8IP1 Missense_Mutation p.E43K 0.11 deleterious(0) probably_damaging(0.956) TCGA-D6-6516-01 11 45931708 45931708 G A PEX16 Missense_Mutation p.P325S 0.34 tolerated_low_confidence(0.13) benign(0.003) TCGA-D6-6516-01 11 4594552 4594552 G A C11orf40 Missense_Mutation p.P98S 0.22 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D6-6516-01 11 47182858 47182858 G A C11orf49 Intron 0.61 TCGA-D6-6516-01 11 47256377 47256377 C T DDB2 Silent p.L258L 0.14 TCGA-D6-6516-01 11 47359002 47359002 C T MYBPC3 Missense_Mutation p.A848T 0.15 deleterious(0.02) probably_damaging(1) TCGA-D6-6516-01 11 47510497 47510497 G A CELF1 Missense_Mutation p.P51S 0.24 deleterious(0.03) possibly_damaging(0.682) TCGA-D6-6516-01 11 47650568 47650568 G A MTCH2 Silent p.I190I 0.29 TCGA-D6-6516-01 11 47861509 47861509 G A NUP160 Missense_Mutation p.P212S 0.20 tolerated(0.41) benign(0.01) TCGA-D6-6516-01 11 5012647 5012647 C T MMP26 Silent p.G172G 0.23 TCGA-D6-6516-01 11 51412038 51412038 G A OR4A5 Missense_Mutation p.R120C 0.19 deleterious_low_confidence(0.03) benign(0.035) TCGA-D6-6516-01 11 5410626 5410626 G A OR51M1 5'UTR 0.36 TCGA-D6-6516-01 11 55062994 55062994 C A TRIM51HP RNA 0.21 TCGA-D6-6516-01 11 55135800 55135800 C T OR4A15 Silent p.A147A 0.16 TCGA-D6-6516-01 11 55371161 55371161 C T OR4C11 Missense_Mutation p.G230E 0.38 deleterious(0.01) probably_damaging(0.973) TCGA-D6-6516-01 11 55433433 55433433 C T OR4C6 Missense_Mutation p.P264L 0.29 deleterious_low_confidence(0.02) benign(0.25) TCGA-D6-6516-01 11 55652952 55652952 C T TRIM51 Silent p.P16P 0.10 TCGA-D6-6516-01 11 55798251 55798251 T C OR5AS1 Silent p.A119A 0.42 TCGA-D6-6516-01 11 55944497 55944497 C T OR5J2 Missense_Mutation p.A135V 0.32 tolerated(0.74) benign(0.002) TCGA-D6-6516-01 11 56019871 56019871 C T OR5T3 Missense_Mutation p.L66F 0.22 tolerated(0.07) benign(0.048) TCGA-D6-6516-01 11 56184848 56184848 G A OR5R1 Silent p.P287P 0.13 TCGA-D6-6516-01 11 56184849 56184849 G A OR5R1 Missense_Mutation p.P287L 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-D6-6516-01 11 57254631 57254631 G A SLC43A1 Silent p.F490F 0.19 TCGA-D6-6516-01 11 57970986 57970986 G A OR1S2 Missense_Mutation p.P223L 0.16 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 11 58170000 58170000 C T OR5B3 Missense_Mutation p.V295M 0.14 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-D6-6516-01 11 5862524 5862524 G T OR52E6 Missense_Mutation p.L202I 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6516-01 11 59132056 59132056 G A OR5AN1 Nonsense_Mutation p.W42* 0.32 TCGA-D6-6516-01 11 59211004 59211004 G A OR5A1 Missense_Mutation p.M121I 0.28 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 11 59610013 59610013 C T GIF Silent p.A138A 0.18 TCGA-D6-6516-01 11 59612891 59612891 G A GIF Silent p.L12L 0.24 TCGA-D6-6516-01 11 59945730 59945730 C T MS4A6A Intron 0.22 TCGA-D6-6516-01 11 59945756 59945756 C T MS4A6A Missense_Mutation p.E134K 0.08 deleterious(0.04) possibly_damaging(0.604) TCGA-D6-6516-01 11 6007757 6007757 G A OR52L1 Missense_Mutation p.A135V 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-D6-6516-01 11 60152592 60152592 C T MS4A7 Missense_Mutation p.S60L 0.31 tolerated(1) benign(0.098) TCGA-D6-6516-01 11 60230539 60230539 G A MS4A1 Missense_Mutation p.G75E 0.15 tolerated(0.76) benign(0.093) TCGA-D6-6516-01 11 60230540 60230540 G A MS4A1 Silent p.G75G 0.16 TCGA-D6-6516-01 11 6048186 6048186 G A OR56A1 Missense_Mutation p.S250F 0.14 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 11 60696260 60696260 C T TMEM132A Missense_Mutation p.L232F 0.21 tolerated(0.55) benign(0.022) TCGA-D6-6516-01 11 607230 607230 C T PHRF1 Missense_Mutation p.P591S 0.39 tolerated(0.09) benign(0.108) TCGA-D6-6516-01 11 60781393 60781393 C T CD6 Missense_Mutation p.L432F 0.29 tolerated(0.06) benign(0.06) TCGA-D6-6516-01 11 61548706 61548706 C T MYRF Missense_Mutation p.P890L 0.22 deleterious(0.02) benign(0.005) TCGA-D6-6516-01 11 61583899 61583899 G T FADS1 Intron 0.36 TCGA-D6-6516-01 11 62190629 62190629 C A SCGB1A1 3'UTR 0.34 TCGA-D6-6516-01 11 62288196 62288196 G A AHNAK Missense_Mutation p.P4565S 0.13 probably_damaging(0.999) TCGA-D6-6516-01 11 62291267 62291267 G A AHNAK Missense_Mutation p.P3541L 0.16 probably_damaging(0.982) TCGA-D6-6516-01 11 62298332 62298332 G A AHNAK Missense_Mutation p.P1186L 0.16 probably_damaging(1) TCGA-D6-6516-01 11 62520304 62520304 G A ZBTB3 Missense_Mutation p.P328L 0.14 tolerated(0.39) benign(0.133) TCGA-D6-6516-01 11 62520305 62520305 G A ZBTB3 Missense_Mutation p.P328S 0.14 tolerated(0.83) benign(0.029) TCGA-D6-6516-01 11 62607075 62607075 C T WDR74 5'UTR 0.23 TCGA-D6-6516-01 11 62651938 62651938 G A SLC3A2 Missense_Mutation p.E336K 0.13 tolerated(0.65) benign(0.004) TCGA-D6-6516-01 11 62655841 62655841 C T SLC3A2 Silent p.F524F 0.16 TCGA-D6-6516-01 11 64026070 64026070 G A PLCB3 Missense_Mutation p.G380S 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 11 64693256 64693256 C T PPP2R5B Missense_Mutation p.P17L 0.56 tolerated(0.07) possibly_damaging(0.713) TCGA-D6-6516-01 11 64694328 64694328 G A PPP2R5B Missense_Mutation p.G115E 0.21 deleterious(0) benign(0.315) TCGA-D6-6516-01 11 6472240 6472240 G A TRIM3 Silent p.D584D 0.24 TCGA-D6-6516-01 11 6477752 6477752 C T TRIM3 Missense_Mutation p.V402M 0.24 deleterious(0.01) possibly_damaging(0.548) TCGA-D6-6516-01 11 64897364 64897364 G A SYVN1 Missense_Mutation p.P478S 0.17 deleterious(0.04) unknown(0) TCGA-D6-6516-01 11 65000798 65000798 C T SLC22A20 RNA 0.33 TCGA-D6-6516-01 11 65398034 65398034 G A PCNXL3 Missense_Mutation p.V1477I 0.23 deleterious(0.01) possibly_damaging(0.573) TCGA-D6-6516-01 11 65633309 65633309 C T MUS81 Silent p.A511A 0.14 TCGA-D6-6516-01 11 65633552 65633552 C T MUS81 3'UTR 0.21 TCGA-D6-6516-01 11 65784244 65784244 G A CATSPER1 3'UTR 0.28 TCGA-D6-6516-01 11 65784291 65784291 G T CATSPER1 3'UTR 0.35 TCGA-D6-6516-01 11 6591316 6591316 T G DNHD1 Missense_Mutation p.M4314R 0.22 possibly_damaging(0.642) TCGA-D6-6516-01 11 66002814 66002814 G A PACS1 Missense_Mutation p.G716E 0.30 tolerated(0.07) probably_damaging(0.997) TCGA-D6-6516-01 11 66039831 66039831 C T RAB1B Intron 0.20 TCGA-D6-6516-01 11 66082791 66082791 G A CD248 Missense_Mutation p.P570S 0.35 tolerated(0.14) benign(0.011) TCGA-D6-6516-01 11 66319003 66319003 G A ACTN3 3'UTR 0.11 TCGA-D6-6516-01 11 66330270 66330270 G A CTSF 3'Flank 0.15 TCGA-D6-6516-01 11 66330648 66330648 G A CTSF 3'Flank 0.16 TCGA-D6-6516-01 11 66391953 66391953 C T RBM14 Silent p.A202A 0.14 TCGA-D6-6516-01 11 66460040 66460040 G A SPTBN2 Silent p.S1719S 0.22 TCGA-D6-6516-01 11 66463938 66463938 C T SPTBN2 Missense_Mutation p.R1363K 0.14 tolerated(0.84) benign(0.001) TCGA-D6-6516-01 11 67399059 67399059 C T TBX10 3'UTR 0.29 TCGA-D6-6516-01 11 67433649 67433649 C T ALDH3B2 Missense_Mutation p.G88E 0.13 deleterious(0.01) possibly_damaging(0.698) TCGA-D6-6516-01 11 70506043 70506043 C T SHANK2 Missense_Mutation p.E652K 0.09 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 11 72553697 72553697 T A FCHSD2 Missense_Mutation p.N632I 0.11 deleterious(0.03) probably_damaging(0.926) TCGA-D6-6516-01 11 73021299 73021299 C T ARHGEF17 Missense_Mutation p.A539V 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D6-6516-01 11 73021300 73021300 C T ARHGEF17 Silent p.A539A 0.20 TCGA-D6-6516-01 11 73021729 73021729 C T ARHGEF17 Silent p.G682G 0.23 TCGA-D6-6516-01 11 73021730 73021730 C T ARHGEF17 Missense_Mutation p.P683S 0.23 tolerated_low_confidence(0.42) benign(0.001) TCGA-D6-6516-01 11 73063872 73063872 C T ARHGEF17 Intron 0.15 TCGA-D6-6516-01 11 73584094 73584094 C T COA4 3'UTR 0.42 TCGA-D6-6516-01 11 73789715 73789715 G A C2CD3 Missense_Mutation p.P1350S 0.17 tolerated(0.74) benign(0.031) TCGA-D6-6516-01 11 7718105 7718105 C T OVCH2 Missense_Mutation p.E350K 0.18 tolerated(0.43) benign(0.008) TCGA-D6-6516-01 11 7718106 7718106 C T OVCH2 Silent p.E349E 0.18 TCGA-D6-6516-01 11 77937683 77937683 C T GAB2 Silent p.G345G 0.11 TCGA-D6-6516-01 11 8120376 8120376 C T TUB Missense_Mutation p.T412I 0.44 tolerated(0.41) benign(0.017) TCGA-D6-6516-01 11 8132603 8132603 G A RIC3 Missense_Mutation p.P251L 0.35 deleterious(0.02) benign(0.276) TCGA-D6-6516-01 11 8132604 8132604 G A RIC3 Missense_Mutation p.P251S 0.36 tolerated(0.15) possibly_damaging(0.55) TCGA-D6-6516-01 11 82643561 82643561 C T C11orf82 Missense_Mutation p.S394L 0.35 tolerated(0.29) benign(0.039) TCGA-D6-6516-01 11 85445671 85445671 G A SYTL2 Missense_Mutation p.P233L 0.20 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 11 88780752 88780752 C T GRM5 Missense_Mutation p.D97N 0.26 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 11 88911532 88911532 C A TYR Nonsense_Mutation p.Y137* 0.11 TCGA-D6-6516-01 11 88911533 88911533 C T TYR Missense_Mutation p.L138F 0.11 deleterious(0) probably_damaging(0.993) TCGA-D6-6516-01 11 89902144 89902144 G C NAALAD2 Silent p.S442S 0.09 TCGA-D6-6516-01 11 92624018 92624018 G A FAT3 Silent p.T4503T 0.30 TCGA-D6-6516-01 11 94129658 94129658 C T GPR83 Silent p.G140G 0.32 TCGA-D6-6516-01 11 94230098 94230098 G A ANKRD49 Nonsense_Mutation p.W80* 0.18 TCGA-D6-6516-01 11 94759406 94759406 C T KDM4E Missense_Mutation p.P229S 0.21 deleterious(0.02) possibly_damaging(0.619) TCGA-D6-6516-01 11 94759491 94759491 C T KDM4E Missense_Mutation p.P257L 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 11 9492911 9492911 G A ZNF143 Missense_Mutation p.G19E 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-D6-6516-01 11 9917511 9917511 A T SBF2 Silent p.P636P 0.22 TCGA-D6-6516-01 12 100567228 100567228 G A RP11-175P13.3 RNA 0.13 TCGA-D6-6516-01 12 10168474 10168474 G A CLEC12B Intron 0.31 TCGA-D6-6516-01 12 101873414 101873414 C T SPIC Missense_Mutation p.S51F 0.14 tolerated(0.65) possibly_damaging(0.778) TCGA-D6-6516-01 12 101873415 101873415 C T SPIC Silent p.S51S 0.14 TCGA-D6-6516-01 12 10223860 10223860 C T CLEC1A 3'UTR 0.15 TCGA-D6-6516-01 12 103246621 103246621 C T PAH Missense_Mutation p.G272R 0.37 tolerated(0.1) benign(0.026) TCGA-D6-6516-01 12 104645324 104645324 T A TXNRD1 Silent p.G37G 0.27 TCGA-D6-6516-01 12 106826181 106826181 A G POLR3B Missense_Mutation p.N517S 0.39 tolerated(0.72) benign(0.002) TCGA-D6-6516-01 12 10772810 10772810 G A STYK1 Missense_Mutation p.P401L 0.16 tolerated(0.44) probably_damaging(0.999) TCGA-D6-6516-01 12 10774549 10774549 G A STYK1 Silent p.V330V 0.11 TCGA-D6-6516-01 12 108169094 108169094 G A ASCL4 Silent p.R34R 0.14 TCGA-D6-6516-01 12 108589835 108589835 T A WSCD2 Missense_Mutation p.F76I 0.17 tolerated(0.18) benign(0.167) TCGA-D6-6516-01 12 109182304 109182304 G A SSH1 Silent p.P870P 0.10 TCGA-D6-6516-01 12 109290808 109290808 C T DAO Silent p.F213F 0.19 TCGA-D6-6516-01 12 109306288 109306288 C T SVOP 3'UTR 0.18 TCGA-D6-6516-01 12 109306289 109306289 C T SVOP 3'UTR 0.18 TCGA-D6-6516-01 12 109522852 109522852 C T USP30 Silent p.F421F 0.17 TCGA-D6-6516-01 12 11035025 11035025 G A PRH1 Missense_Mutation p.P104S 0.11 tolerated_low_confidence(0.24) unknown(0) TCGA-D6-6516-01 12 110495088 110495088 C T C12orf76 Missense_Mutation p.E69K 0.10 deleterious_low_confidence(0) benign(0.008) TCGA-D6-6516-01 12 11061286 11061286 G A TAS2R13 Silent p.S204S 0.30 TCGA-D6-6516-01 12 11083617 11083617 G A PRH2 Missense_Mutation p.G153R 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-D6-6516-01 12 111776107 111776107 G A CUX2 Missense_Mutation p.E1072K 0.10 deleterious(0) probably_damaging(0.919) TCGA-D6-6516-01 12 111785402 111785402 G A CUX2 Missense_Mutation p.G1245E 0.11 deleterious(0.03) benign(0.24) TCGA-D6-6516-01 12 111951193 111951193 G A ATXN2 Missense_Mutation p.S669L 0.42 benign(0.368) TCGA-D6-6516-01 12 112182645 112182645 C T ACAD10 Missense_Mutation p.S669F 0.17 tolerated(0.13) benign(0.262) TCGA-D6-6516-01 12 112182646 112182646 C T ACAD10 Silent p.S669S 0.17 TCGA-D6-6516-01 12 11420677 11420677 C T PRB3 Missense_Mutation p.G169E 0.12 tolerated(0.37) unknown(0) TCGA-D6-6516-01 12 11420678 11420678 C T PRB3 Missense_Mutation p.G169R 0.12 tolerated(0.4) unknown(0) TCGA-D6-6516-01 12 11461790 11461790 C T PRB4 Missense_Mutation p.G43R 0.12 deleterious_low_confidence(0) unknown(0) TCGA-D6-6516-01 12 11546792 11546792 G A PRB2 Missense_Mutation p.P74S 0.15 tolerated(0.8) unknown(0) TCGA-D6-6516-01 12 116434339 116434339 G A MED13L Missense_Mutation p.P980S 0.18 tolerated(0.09) unknown(0) TCGA-D6-6516-01 12 119588916 119588916 C T SRRM4 Missense_Mutation p.R391C 0.09 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-D6-6516-01 12 119866561 119866561 G A CCDC60 Missense_Mutation p.R55Q 0.22 tolerated(0.1) probably_damaging(0.917) TCGA-D6-6516-01 12 121416883 121416883 G A HNF1A Silent p.V104V 0.24 TCGA-D6-6516-01 12 123001925 123001925 C T RSRC2 Missense_Mutation p.E151K 0.22 tolerated_low_confidence(0.46) unknown(0) TCGA-D6-6516-01 12 123343423 123343423 C T HIP1R Missense_Mutation p.H697Y 0.18 deleterious(0.01) benign(0.049) TCGA-D6-6516-01 12 123687373 123687373 G A MPHOSPH9 Nonsense_Mutation p.Q375* 0.14 TCGA-D6-6516-01 12 123812357 123812357 C A SBNO1 Missense_Mutation p.A479S 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 12 124272466 124272466 C T DNAH10 Missense_Mutation p.R452W 0.33 probably_damaging(0.989) TCGA-D6-6516-01 12 124421792 124421792 G A CCDC92 Missense_Mutation p.S270F 0.11 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-D6-6516-01 12 124497004 124497004 C T ZNF664 Missense_Mutation p.H105Y 0.41 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 12 124819764 124819764 G A NCOR2 Nonsense_Mutation p.Q2110* 0.41 TCGA-D6-6516-01 12 125396219 125396219 G A UBC 3'UTR 0.31 TCGA-D6-6516-01 12 125438462 125438462 C T DHX37 Missense_Mutation p.E887K 0.23 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 12 125460001 125460001 G A DHX37 Missense_Mutation p.S315F 0.33 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 12 125834437 125834437 C T TMEM132B Silent p.F164F 0.21 TCGA-D6-6516-01 12 125834438 125834438 C T TMEM132B Missense_Mutation p.P165S 0.21 tolerated(0.11) benign(0.397) TCGA-D6-6516-01 12 126138849 126138849 G A TMEM132B Missense_Mutation p.D944N 0.13 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 12 129559115 129559115 C T TMEM132D Missense_Mutation p.E869K 0.20 tolerated(0.84) benign(0.022) TCGA-D6-6516-01 12 129559604 129559604 C T TMEM132D Missense_Mutation p.E706K 0.09 deleterious(0.01) probably_damaging(0.966) TCGA-D6-6516-01 12 130648775 130648775 G A FZD10 Missense_Mutation p.G430S 0.17 deleterious(0.04) probably_damaging(1) TCGA-D6-6516-01 12 13224269 13224269 C T KIAA1467 Missense_Mutation p.S488L 0.54 tolerated(0.26) benign(0.219) TCGA-D6-6516-01 12 132250839 132250839 C T SFSWAP Missense_Mutation p.P710S 0.14 tolerated(0.5) benign(0.019) TCGA-D6-6516-01 12 132250840 132250840 C T SFSWAP Missense_Mutation p.P710L 0.14 deleterious(0.02) benign(0.117) TCGA-D6-6516-01 12 132593163 132593163 C T EP400NL Missense_Mutation p.A312V 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.817) TCGA-D6-6516-01 12 133423717 133423717 C A CHFR Splice_Site p.X562_splice 0.17 TCGA-D6-6516-01 12 13716871 13716871 C T GRIN2B Missense_Mutation p.E1101K 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-D6-6516-01 12 13768162 13768162 T G GRIN2B Missense_Mutation p.T514P 0.12 deleterious(0.01) probably_damaging(0.964) TCGA-D6-6516-01 12 15834210 15834210 G A EPS8 Missense_Mutation p.S29F 0.16 deleterious(0.02) benign(0.309) TCGA-D6-6516-01 12 18876368 18876368 C T PLCZ1 Missense_Mutation p.E82K 0.15 tolerated(0.62) benign(0.01) TCGA-D6-6516-01 12 19427805 19427805 G A PLEKHA5 Missense_Mutation p.G401R 0.21 tolerated(0.34) benign(0.418) TCGA-D6-6516-01 12 2016673 2016673 G A CACNA2D4 Silent p.F238F 0.15 TCGA-D6-6516-01 12 20766428 20766428 G A PDE3A Missense_Mutation p.G355S 0.10 tolerated(0.2) probably_damaging(1) TCGA-D6-6516-01 12 21015719 21015719 C T SLCO1B3 Missense_Mutation p.P220S 0.09 tolerated(0.05) benign(0.417) TCGA-D6-6516-01 12 21325692 21325692 C T SLCO1B1 Missense_Mutation p.L65F 0.40 tolerated(0.28) benign(0.03) TCGA-D6-6516-01 12 21453381 21453381 G A SLCO1A2 Missense_Mutation p.P271S 0.14 deleterious(0.01) possibly_damaging(0.772) TCGA-D6-6516-01 12 21968824 21968824 G A ABCC9 Missense_Mutation p.P1299L 0.18 tolerated(0.11) benign(0.003) TCGA-D6-6516-01 12 22005385 22005385 C T ABCC9 Missense_Mutation p.G854R 0.51 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 12 2566793 2566793 G A CACNA1C Silent p.G226G 0.23 TCGA-D6-6516-01 12 26784938 26784938 A C ITPR2 Missense_Mutation p.V932G 0.12 deleterious(0.04) probably_damaging(0.944) TCGA-D6-6516-01 12 31435563 31435563 A T FAM60A 3'UTR 0.25 TCGA-D6-6516-01 12 39696913 39696913 G A KIF21A Missense_Mutation p.L1529F 0.31 tolerated(0.71) possibly_damaging(0.573) TCGA-D6-6516-01 12 39726014 39726014 A G KIF21A Splice_Site p.X1017_splice 0.32 TCGA-D6-6516-01 12 40714868 40714868 C T LRRK2 Missense_Mutation p.P1683L 0.16 deleterious(0) probably_damaging(0.965) TCGA-D6-6516-01 12 40758754 40758754 G A LRRK2 Missense_Mutation p.G2431E 0.13 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 12 41967305 41967305 C T PDZRN4 Silent p.D908D 0.13 TCGA-D6-6516-01 12 44148206 44148206 C T PUS7L Silent p.R281R 0.33 TCGA-D6-6516-01 12 46761092 46761092 G A SLC38A2 Silent p.L116L 0.12 TCGA-D6-6516-01 12 47181734 47181734 G A SLC38A4 Silent p.S97S 0.38 TCGA-D6-6516-01 12 48383559 48383559 G A COL2A1 Silent p.G351G 0.28 TCGA-D6-6516-01 12 48543601 48543601 C T ASB8 Missense_Mutation p.E139K 0.15 tolerated(0.17) benign(0.057) TCGA-D6-6516-01 12 49312668 49312668 G A CCDC65 Silent p.L336L 0.21 TCGA-D6-6516-01 12 49396675 49396675 C T PRKAG1 3'UTR 0.12 TCGA-D6-6516-01 12 49412559 49412559 G A PRKAG1 5'UTR 0.08 TCGA-D6-6516-01 12 49523492 49523492 G A TUBA1B Missense_Mutation p.S6F 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-D6-6516-01 12 49719907 49719907 C T TROAP Nonsense_Mutation p.Q228* 0.19 TCGA-D6-6516-01 12 49743028 49743028 G A DNAJC22 Missense_Mutation p.G125S 0.14 deleterious(0) probably_damaging(0.984) TCGA-D6-6516-01 12 50189930 50189930 G A NCKAP5L Silent p.S571S 0.22 TCGA-D6-6516-01 12 50189931 50189931 G A NCKAP5L Missense_Mutation p.S571F 0.22 tolerated(0.1) possibly_damaging(0.843) TCGA-D6-6516-01 12 50400385 50400385 G A RACGAP1 Silent p.F40F 0.42 TCGA-D6-6516-01 12 50483706 50483706 C T SMARCD1 Nonsense_Mutation p.Q271* 0.17 TCGA-D6-6516-01 12 52639266 52639266 C T KRT7 Missense_Mutation p.A352V 0.15 deleterious(0.04) possibly_damaging(0.674) TCGA-D6-6516-01 12 52639267 52639267 C T KRT7 Silent p.A352A 0.13 TCGA-D6-6516-01 12 52651988 52651988 G A KRT121P RNA 0.33 TCGA-D6-6516-01 12 53012331 53012331 G A KRT73 5'UTR 0.25 TCGA-D6-6516-01 12 53187989 53187989 G A KRT3 Silent p.L258L 0.12 TCGA-D6-6516-01 12 53589185 53589185 C T ITGB7 Silent p.V378V 0.13 TCGA-D6-6516-01 12 54757158 54757158 T C GPR84 Missense_Mutation p.I160V 0.14 tolerated(1) benign(0.004) TCGA-D6-6516-01 12 54857043 54857043 G A GTSF1 Silent p.P52P 0.13 TCGA-D6-6516-01 12 54857044 54857044 G A GTSF1 Missense_Mutation p.P52L 0.12 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 12 54936457 54936457 C T NCKAP1L Silent p.F1124F 0.12 TCGA-D6-6516-01 12 54936496 54936496 C T NCKAP1L 3'UTR 0.16 TCGA-D6-6516-01 12 54969816 54969816 G T PDE1B Silent p.L436L 0.19 TCGA-D6-6516-01 12 54971294 54971294 G A PPP1R1A 3'Flank 0.41 TCGA-D6-6516-01 12 55367350 55367350 G A TESPA1 Intron 0.35 TCGA-D6-6516-01 12 55688295 55688295 G A OR6C6 Missense_Mutation p.S241F 0.16 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-D6-6516-01 12 55846439 55846439 G A OR6C2 Missense_Mutation p.V148M 0.35 tolerated_low_confidence(0.76) benign(0.123) TCGA-D6-6516-01 12 56031407 56031407 C T OR10P1 Silent p.S244S 0.15 TCGA-D6-6516-01 12 56077597 56077597 G A METTL7B Missense_Mutation p.G167R 0.11 deleterious(0) probably_damaging(0.992) TCGA-D6-6516-01 12 56077598 56077598 G A METTL7B Missense_Mutation p.G167E 0.11 deleterious(0) probably_damaging(0.989) TCGA-D6-6516-01 12 56109967 56109967 C T BLOC1S1 Silent p.R44R 0.24 TCGA-D6-6516-01 12 56216453 56216453 A G DNAJC14 Silent p.H566H 0.18 TCGA-D6-6516-01 12 56487254 56487254 C T ERBB3 Missense_Mutation p.S467F 0.33 deleterious(0) benign(0.354) TCGA-D6-6516-01 12 56504217 56504217 G T PA2G4 Nonsense_Mutation p.E222* 0.16 TCGA-D6-6516-01 12 56622940 56622940 C T NABP2 Silent p.G193G 0.16 TCGA-D6-6516-01 12 56622941 56622941 C T NABP2 Missense_Mutation p.P194S 0.16 tolerated(0.45) benign(0) TCGA-D6-6516-01 12 56638205 56638205 G A ANKRD52 Nonsense_Mutation p.R913* 0.42 TCGA-D6-6516-01 12 57003658 57003658 G A BAZ2A Nonsense_Mutation p.R654* 0.23 TCGA-D6-6516-01 12 57111742 57111742 G A NACA Intron 0.14 TCGA-D6-6516-01 12 57111743 57111743 G A NACA Intron 0.14 TCGA-D6-6516-01 12 57111775 57111775 G A NACA Intron 0.16 TCGA-D6-6516-01 12 57324258 57324258 G A SDR9C7 Silent p.A104A 0.28 TCGA-D6-6516-01 12 57554760 57554760 C T LRP1 Silent p.H688H 0.13 TCGA-D6-6516-01 12 57569840 57569840 C T LRP1 Silent p.T1314T 0.12 TCGA-D6-6516-01 12 57919368 57919368 G A MBD6 Missense_Mutation p.R206K 0.24 tolerated_low_confidence(0.08) unknown(0) TCGA-D6-6516-01 12 57919369 57919369 G A MBD6 Silent p.R206R 0.26 TCGA-D6-6516-01 12 58020705 58020705 G A B4GALNT1 Missense_Mutation p.S475F 0.18 deleterious(0) probably_damaging(0.972) TCGA-D6-6516-01 12 58121932 58121932 G A AGAP2-AS1 3'UTR 0.26 TCGA-D6-6516-01 12 58220853 58220853 C A CTDSP2 Missense_Mutation p.V94L 0.32 tolerated(0.39) benign(0) TCGA-D6-6516-01 12 59270358 59270358 G A LRIG3 Missense_Mutation p.P855L 0.18 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 12 6122811 6122811 C T VWF Missense_Mutation p.R1819K 0.26 tolerated(0.53) possibly_damaging(0.694) TCGA-D6-6516-01 12 62784990 62784990 C T USP15 Missense_Mutation p.P672S 0.11 tolerated(0.6) benign(0.016) TCGA-D6-6516-01 12 62784991 62784991 C T USP15 Missense_Mutation p.P672L 0.11 tolerated(0.39) benign(0.002) TCGA-D6-6516-01 12 64173779 64173779 C T TMEM5 Silent p.I13I 0.45 TCGA-D6-6516-01 12 65640076 65640076 G T LEMD3 Missense_Mutation p.G903C 0.14 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D6-6516-01 12 6747329 6747329 G A ACRBP 3'UTR 0.17 TCGA-D6-6516-01 12 6909313 6909313 G A CD4 Silent p.R3R 0.43 TCGA-D6-6516-01 12 69264150 69264150 C T CPM Missense_Mutation p.R154Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 12 6965611 6965611 C T USP5 Missense_Mutation p.P194L 0.13 deleterious(0.03) possibly_damaging(0.503) TCGA-D6-6516-01 12 6973918 6973918 C T USP5 Silent p.I759I 0.26 TCGA-D6-6516-01 12 70004462 70004462 C T LRRC10 Missense_Mutation p.E53K 0.25 tolerated(0.25) possibly_damaging(0.639) TCGA-D6-6516-01 12 70918333 70918333 G A PTPRB Silent p.V2181V 0.08 TCGA-D6-6516-01 12 7171649 7171649 C T C1S Missense_Mutation p.S157F 0.34 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 12 7527338 7527338 G A CD163L1 Missense_Mutation p.R1037C 0.13 deleterious(0) probably_damaging(0.959) TCGA-D6-6516-01 12 75895477 75895477 G A GLIPR1 3'UTR 0.14 TCGA-D6-6516-01 12 7647932 7647932 C T CD163 Missense_Mutation p.E389K 0.16 tolerated(0.34) benign(0.075) TCGA-D6-6516-01 12 78553043 78553043 C T NAV3 Silent p.L1616L 0.10 TCGA-D6-6516-01 12 81110753 81110753 C T MYF5 5'UTR 0.25 TCGA-D6-6516-01 12 81747119 81747119 C T PPFIA2 Splice_Site p.X592_splice 0.28 TCGA-D6-6516-01 12 8212050 8212050 C T C3AR1 Silent p.R244R 0.18 TCGA-D6-6516-01 12 8244401 8244401 G A NECAP1 Missense_Mutation p.R113Q 0.16 deleterious(0) possibly_damaging(0.896) TCGA-D6-6516-01 12 8244402 8244402 G A NECAP1 Silent p.R113R 0.16 TCGA-D6-6516-01 12 85413439 85413439 G A TSPAN19 Missense_Mutation p.T139I 0.20 tolerated(0.27) benign(0.022) TCGA-D6-6516-01 12 85515605 85515605 C T LRRIQ1 Nonsense_Mutation p.Q1170* 0.20 TCGA-D6-6516-01 12 85518236 85518236 G A LRRIQ1 Missense_Mutation p.E1316K 0.31 tolerated(0.07) benign(0.129) TCGA-D6-6516-01 12 88454692 88454692 C T CEP290 Missense_Mutation p.R2146K 0.22 benign(0.009) TCGA-D6-6516-01 12 88586521 88586521 C T TMTC3 Missense_Mutation p.A616V 0.26 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 12 88586522 88586522 C T TMTC3 Silent p.A616A 0.27 TCGA-D6-6516-01 12 91449634 91449634 C T KERA Missense_Mutation p.R142K 0.29 tolerated(0.96) benign(0.038) TCGA-D6-6516-01 12 93100531 93100531 C T C12orf74 Missense_Mutation p.P42S 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-D6-6516-01 12 93285445 93285445 G A EEA1 Missense_Mutation p.P26L 0.29 deleterious(0.02) benign(0.011) TCGA-D6-6516-01 12 94613811 94613811 G A PLXNC1 Missense_Mutation p.G525E 0.17 tolerated(0.16) probably_damaging(0.965) TCGA-D6-6516-01 12 94642126 94642126 C T PLXNC1 Missense_Mutation p.L906F 0.18 tolerated(0.23) benign(0.005) TCGA-D6-6516-01 12 98848976 98848976 G A SLC9A7P1 RNA 0.42 TCGA-D6-6516-01 12 99052973 99052973 G - APAF1 Frame_Shift_Del p.K189Nfs*8 0.16 TCGA-D6-6516-01 12 99223030 99223030 C T ANKS1B Silent p.Q996Q 0.15 TCGA-D6-6516-01 12 99478745 99478745 C - ANKS1B Frame_Shift_Del p.H862Tfs*15 0.12 TCGA-D6-6516-01 13 108518049 108518049 G A FAM155A Missense_Mutation p.S299F 0.22 deleterious(0.03) probably_damaging(0.955) TCGA-D6-6516-01 13 109459108 109459108 G A MYO16 Missense_Mutation p.D253N 0.31 tolerated(1) benign(0.009) TCGA-D6-6516-01 13 111290678 111290678 C A CARKD Missense_Mutation p.T328N 0.16 deleterious_low_confidence(0.01) benign(0.039) TCGA-D6-6516-01 13 113783849 113783849 C A F10 Missense_Mutation p.H52N 0.20 tolerated(1) benign(0) TCGA-D6-6516-01 13 113852537 113852537 G A PCID2 Silent p.P56P 0.12 TCGA-D6-6516-01 13 20067628 20067628 C T TPTE2 Missense_Mutation p.E9K 0.22 deleterious_low_confidence(0.01) benign(0.028) TCGA-D6-6516-01 13 21205187 21205187 G A IFT88 Silent p.K453K 0.18 TCGA-D6-6516-01 13 21563351 21563351 G A LATS2 Missense_Mutation p.P190S 0.10 tolerated_low_confidence(0.71) benign(0.006) TCGA-D6-6516-01 13 23907553 23907553 G A SACS Missense_Mutation p.L3488F 0.16 probably_damaging(0.995) TCGA-D6-6516-01 13 23913425 23913425 G A SACS Silent p.F1530F 0.24 TCGA-D6-6516-01 13 23930133 23930133 G A SACS Silent p.I206I 0.21 TCGA-D6-6516-01 13 24466110 24466110 C T C1QTNF9B Missense_Mutation p.G107E 0.20 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 13 25272805 25272805 C T ATP12A Missense_Mutation p.H514Y 0.28 deleterious(0.03) benign(0.269) TCGA-D6-6516-01 13 26411409 26411409 G A ATP8A2 Missense_Mutation p.G955S 0.22 tolerated(0.42) possibly_damaging(0.557) TCGA-D6-6516-01 13 26828758 26828758 C T CDK8 5'UTR 0.40 TCGA-D6-6516-01 13 27256961 27256961 C T WASF3 Missense_Mutation p.P401S 0.28 tolerated(0.28) probably_damaging(0.998) TCGA-D6-6516-01 13 29599353 29599353 G A MTUS2 Missense_Mutation p.R183K 0.14 tolerated(1) benign(0.024) TCGA-D6-6516-01 13 29599354 29599354 G A MTUS2 Silent p.R183R 0.14 TCGA-D6-6516-01 13 32776527 32776527 A G FRY Missense_Mutation p.K1294R 0.15 tolerated(0.31) benign(0.02) TCGA-D6-6516-01 13 32805375 32805375 G A FRY Missense_Mutation p.S1822N 0.26 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 13 33016575 33016575 C T N4BP2L2 Missense_Mutation p.G700E 0.23 tolerated(1) benign(0.062) TCGA-D6-6516-01 13 35622772 35622772 G A NBEA Missense_Mutation p.D266N 0.38 deleterious(0.04) probably_damaging(0.976) TCGA-D6-6516-01 13 37446912 37446912 G A SMAD9 Missense_Mutation p.P185S 0.21 tolerated(0.27) benign(0.001) TCGA-D6-6516-01 13 38160276 38160276 C T POSTN Missense_Mutation p.A299T 0.34 tolerated(0.17) probably_damaging(0.967) TCGA-D6-6516-01 13 41826834 41826834 G A MTRF1 Missense_Mutation p.S215L 0.24 deleterious(0) possibly_damaging(0.61) TCGA-D6-6516-01 13 42733462 42733462 C T DGKH Missense_Mutation p.T228I 0.16 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 13 46287594 46287594 C T SPERT Missense_Mutation p.P145L 0.19 tolerated(0.12) benign(0.207) TCGA-D6-6516-01 13 46357846 46357846 G A SIAH3 Missense_Mutation p.S161F 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-D6-6516-01 13 46701838 46701838 C T LCP1 Missense_Mutation p.R591Q 0.17 deleterious(0) probably_damaging(0.991) TCGA-D6-6516-01 13 50285056 50285056 G A KPNA3 Missense_Mutation p.L292F 0.22 deleterious(0.03) possibly_damaging(0.791) TCGA-D6-6516-01 13 50299560 50299560 A C KPNA3 Missense_Mutation p.V154G 0.19 deleterious(0) probably_damaging(0.991) TCGA-D6-6516-01 13 51826338 51826338 G A FAM124A Splice_Site p.X314_splice 0.26 TCGA-D6-6516-01 13 61102891 61102891 C T TDRD3 Missense_Mutation p.P511L 0.17 tolerated(0.23) benign(0.012) TCGA-D6-6516-01 13 61986527 61986527 G A PCDH20 Nonsense_Mutation p.Q569* 0.18 TCGA-D6-6516-01 13 64321144 64321144 G A AL445989.1 Missense_Mutation p.G71S 0.20 unknown(0) TCGA-D6-6516-01 13 73401257 73401257 G A PIBF1 Splice_Site p.X305_splice 0.27 TCGA-D6-6516-01 13 74420074 74420074 G A KLF12 Missense_Mutation p.P187L 0.21 deleterious(0) possibly_damaging(0.722) TCGA-D6-6516-01 13 75898414 75898414 C T TBC1D4 Silent p.Q719Q 0.23 TCGA-D6-6516-01 13 77581856 77581856 A C FBXL3 Missense_Mutation p.S237R 0.15 deleterious(0) probably_damaging(0.919) TCGA-D6-6516-01 13 77670523 77670523 C T MYCBP2 Missense_Mutation p.G3255E 0.27 probably_damaging(0.998) TCGA-D6-6516-01 13 78335135 78335135 G A SLAIN1 Silent p.P365P 0.24 TCGA-D6-6516-01 13 78477474 78477474 C T EDNRB Nonsense_Mutation p.W296* 0.15 TCGA-D6-6516-01 13 79191069 79191069 G A RNF219 Missense_Mutation p.S276F 0.46 deleterious(0.04) benign(0.429) TCGA-D6-6516-01 13 80911432 80911432 C T SPRY2 Missense_Mutation p.G137R 0.19 deleterious(0) possibly_damaging(0.708) TCGA-D6-6516-01 13 84453522 84453522 C T SLITRK1 3'UTR 0.23 TCGA-D6-6516-01 13 95118002 95118002 C A DCT Missense_Mutation p.G250W 0.28 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 13 96416196 96416196 T G DNAJC3 Missense_Mutation p.M355R 0.38 tolerated(0.52) benign(0.002) TCGA-D6-6516-01 14 100402648 100402648 C T EML1 Missense_Mutation p.S710F 0.39 deleterious(0) possibly_damaging(0.876) TCGA-D6-6516-01 14 100795147 100795147 G A SLC25A47 Missense_Mutation p.A138T 0.40 tolerated(0.15) benign(0.04) TCGA-D6-6516-01 14 101200538 101200538 C T DLK1 Missense_Mutation p.H153Y 0.20 tolerated(0.37) benign(0.06) TCGA-D6-6516-01 14 102675278 102675278 G T WDR20 Silent p.T288T 0.46 TCGA-D6-6516-01 14 102829212 102829212 G A CINP 5'Flank 0.29 TCGA-D6-6516-01 14 102829213 102829213 G A CINP 5'Flank 0.31 TCGA-D6-6516-01 14 103566784 103566784 C T EXOC3L4 Silent p.F76F 0.12 TCGA-D6-6516-01 14 105408933 105408933 G A AHNAK2 Silent p.S4285S 0.33 TCGA-D6-6516-01 14 105414531 105414531 G A AHNAK2 Silent p.P2419P 0.18 TCGA-D6-6516-01 14 105414532 105414532 G A AHNAK2 Missense_Mutation p.P2419L 0.17 benign(0) TCGA-D6-6516-01 14 105417195 105417195 G A AHNAK2 Silent p.S1531S 0.10 TCGA-D6-6516-01 14 106780568 106780568 G A IGHV4-28 Missense_Mutation p.S99F 0.14 tolerated(0.21) benign(0.194) TCGA-D6-6516-01 14 106967212 106967212 C T IGHV1-46 Missense_Mutation p.G63E 0.27 deleterious(0.01) possibly_damaging(0.619) TCGA-D6-6516-01 14 106967213 106967213 C T IGHV1-46 Missense_Mutation p.G63R 0.27 deleterious(0.03) benign(0.433) TCGA-D6-6516-01 14 107114046 107114046 C T IGHV3-64 Splice_Site p.X17_splice 0.14 TCGA-D6-6516-01 14 19553775 19553775 G C POTEG Missense_Mutation p.W120S 0.07 tolerated(0.07) possibly_damaging(0.552) TCGA-D6-6516-01 14 20296255 20296255 C T OR4N2 Silent p.A216A 0.17 TCGA-D6-6516-01 14 20344870 20344870 C T OR4K2 Silent p.S148S 0.16 TCGA-D6-6516-01 14 20443771 20443771 C A OR4K15 Silent p.R32R 0.33 TCGA-D6-6516-01 14 20443795 20443795 G A OR4K15 Missense_Mutation p.G40R 0.34 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 14 20444538 20444538 C A OR4K15 Missense_Mutation p.S287R 0.27 deleterious(0.01) possibly_damaging(0.694) TCGA-D6-6516-01 14 20444539 20444539 A G OR4K15 Missense_Mutation p.S288G 0.27 tolerated(0.15) benign(0.005) TCGA-D6-6516-01 14 20482421 20482421 C T OR4K14 Silent p.%3D 0.30 TCGA-D6-6516-01 14 20482831 20482831 C T OR4K14 Silent p.E174E 0.30 TCGA-D6-6516-01 14 20502834 20502834 G A OR4K13 Silent p.F28F 0.24 TCGA-D6-6516-01 14 20845880 20845880 G A TEP1 Silent p.P1918P 0.16 TCGA-D6-6516-01 14 21499262 21499262 G A TPPP2 Missense_Mutation p.E89K 0.14 deleterious(0) possibly_damaging(0.755) TCGA-D6-6516-01 14 21547156 21547156 G A ARHGEF40 Missense_Mutation p.R787Q 0.37 tolerated(0.23) benign(0) TCGA-D6-6516-01 14 22192109 22192109 C T TRAV3 5'UTR 0.36 TCGA-D6-6516-01 14 22192110 22192110 C T TRAV3 5'UTR 0.35 TCGA-D6-6516-01 14 22265892 22265892 C T TRAV8-1 Missense_Mutation p.P59S 0.33 deleterious(0.01) possibly_damaging(0.902) TCGA-D6-6516-01 14 22392672 22392672 G A TRAV14DV4 Missense_Mutation p.M65I 0.14 TCGA-D6-6516-01 14 22446804 22446804 C G TRAV8-6 5'UTR 0.20 TCGA-D6-6516-01 14 22459004 22459004 C T TRAV16 Silent p.L52L 0.36 TCGA-D6-6516-01 14 22509168 22509168 G A TRAV20 Missense_Mutation p.E36K 0.16 tolerated(0.1) probably_damaging(0.981) TCGA-D6-6516-01 14 22690138 22690138 G A TRAV35 Missense_Mutation p.E33K 0.38 deleterious(0.04) possibly_damaging(0.895) TCGA-D6-6516-01 14 22931949 22931949 C T TRDC Silent p.S9S 0.41 TCGA-D6-6516-01 14 23312536 23312536 C T MMP14 Silent p.P253P 0.23 TCGA-D6-6516-01 14 23374831 23374831 C T RBM23 Missense_Mutation p.E147K 0.26 deleterious(0.03) benign(0.016) TCGA-D6-6516-01 14 23465357 23465357 G A C14orf93 Missense_Mutation p.P240S 0.12 tolerated_low_confidence(0.39) benign(0.154) TCGA-D6-6516-01 14 23793208 23793208 G A PABPN1 Missense_Mutation p.V226M 0.12 tolerated(0.05) possibly_damaging(0.899) TCGA-D6-6516-01 14 23793209 23793209 T A PABPN1 Missense_Mutation p.V226E 0.14 deleterious(0) probably_damaging(0.992) TCGA-D6-6516-01 14 23794396 23794396 G A PABPN1 Intron 0.19 TCGA-D6-6516-01 14 23855233 23855233 C T MYH6 Silent p.E1689E 0.24 TCGA-D6-6516-01 14 24647314 24647314 C T REC8 Silent p.P293P 0.13 TCGA-D6-6516-01 14 24884780 24884780 C T NYNRIN Silent p.L1275L 0.23 TCGA-D6-6516-01 14 24901080 24901080 G A KHNYN Missense_Mutation p.A205T 0.15 tolerated(0.21) benign(0.002) TCGA-D6-6516-01 14 28733935 28733935 C T BNIP3P1 RNA 0.19 TCGA-D6-6516-01 14 31071301 31071301 G A G2E3 Missense_Mutation p.R325K 0.36 tolerated(0.14) benign(0.034) TCGA-D6-6516-01 14 31346827 31346827 G A COCH Silent p.E44E 0.11 TCGA-D6-6516-01 14 31574596 31574596 G A HECTD1 Silent p.A2464A 0.31 TCGA-D6-6516-01 14 33293542 33293542 C T AKAP6 Missense_Mutation p.P2175S 0.15 tolerated_low_confidence(0.77) benign(0.004) TCGA-D6-6516-01 14 35595980 35595980 C T KIAA0391 Silent p.V342V 0.12 TCGA-D6-6516-01 14 37194875 37194875 G A SLC25A21 Missense_Mutation p.A113V 0.18 tolerated(0.06) benign(0.141) TCGA-D6-6516-01 14 39717158 39717158 C T MIA2 Silent p.F460F 0.20 TCGA-D6-6516-01 14 45603718 45603718 C T FKBP3 5'UTR 0.36 TCGA-D6-6516-01 14 47120888 47120888 G A RPL10L Missense_Mutation p.P18S 0.31 deleterious(0.02) possibly_damaging(0.873) TCGA-D6-6516-01 14 57099810 57099810 C T TMEM260 Missense_Mutation p.P549S 0.36 tolerated(0.32) benign(0.001) TCGA-D6-6516-01 14 58605578 58605578 T G C14orf37 Missense_Mutation p.T167P 0.10 tolerated(0.08) possibly_damaging(0.702) TCGA-D6-6516-01 14 58814436 58814436 C T ARID4A Missense_Mutation p.P415L 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-D6-6516-01 14 59113414 59113414 G A DACT1 Silent p.L691L 0.21 TCGA-D6-6516-01 14 60591858 60591858 C T PCNXL4 Missense_Mutation p.P756L 0.30 tolerated(0.1) benign(0.173) TCGA-D6-6516-01 14 61952223 61952223 C T PRKCH Missense_Mutation p.R428C 0.31 deleterious(0) probably_damaging(0.981) TCGA-D6-6516-01 14 62536443 62536443 G A SYT16 Missense_Mutation p.G216R 0.30 tolerated(0.18) benign(0.005) TCGA-D6-6516-01 14 62547672 62547672 G T SYT16 Missense_Mutation p.V372L 0.32 tolerated(0.92) benign(0.075) TCGA-D6-6516-01 14 65208865 65208865 C T PLEKHG3 Missense_Mutation p.P821L 0.22 deleterious(0.01) benign(0.3) TCGA-D6-6516-01 14 65453806 65453806 C T FNTB Silent p.S45S 0.33 TCGA-D6-6516-01 14 67859925 67859925 G A PLEK2 Silent p.T141T 0.17 TCGA-D6-6516-01 14 69558501 69558501 G A DCAF5 Missense_Mutation p.P257S 0.13 deleterious(0.05) probably_damaging(0.973) TCGA-D6-6516-01 14 70177720 70177720 C T KIAA0247 3'UTR 0.22 TCGA-D6-6516-01 14 71444535 71444535 C T PCNX Missense_Mutation p.P494L 0.26 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-D6-6516-01 14 73137881 73137881 C T DPF3 Missense_Mutation p.R346Q 0.37 tolerated_low_confidence(0.24) unknown(0) TCGA-D6-6516-01 14 73490962 73490962 C T ZFYVE1 Silent p.R85R 0.17 TCGA-D6-6516-01 14 74411450 74411450 G A FAM161B Silent p.V234V 0.10 TCGA-D6-6516-01 14 74874630 74874630 G A SYNDIG1L Silent p.D160D 0.12 TCGA-D6-6516-01 14 75643325 75643325 G A TMED10 5'UTR 0.18 TCGA-D6-6516-01 14 77275791 77275791 G T ANGEL1 Missense_Mutation p.A87D 0.14 tolerated(0.17) benign(0.282) TCGA-D6-6516-01 14 77746178 77746178 C T POMT2 Missense_Mutation p.A627T 0.16 tolerated(0.5) benign(0.001) TCGA-D6-6516-01 14 77797549 77797549 C T GSTZ1 3'UTR 0.28 TCGA-D6-6516-01 14 77872358 77872358 G A NOXRED1 Missense_Mutation p.S268F 0.21 deleterious(0.04) probably_damaging(0.94) TCGA-D6-6516-01 14 77889183 77889183 G A NOXRED1 Missense_Mutation p.P17L 0.16 tolerated(0.19) benign(0.081) TCGA-D6-6516-01 14 77950775 77950775 C T ISM2 Missense_Mutation p.G173E 0.11 tolerated(0.25) unknown(0) TCGA-D6-6516-01 14 81669156 81669156 G A GTF2A1 Intron 0.10 TCGA-D6-6516-01 14 88938664 88938664 G A PTPN21 Missense_Mutation p.P932L 0.10 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 14 88938665 88938665 G A PTPN21 Missense_Mutation p.P932S 0.11 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 14 89878802 89878802 G A FOXN3 Missense_Mutation p.P7S 0.13 deleterious(0) benign(0.362) TCGA-D6-6516-01 14 90650550 90650550 C T KCNK13 Missense_Mutation p.L144F 0.14 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 14 91770131 91770131 G A CCDC88C Silent p.A1183A 0.39 TCGA-D6-6516-01 14 91770132 91770132 G A CCDC88C Missense_Mutation p.A1183V 0.41 tolerated(0.2) benign(0.003) TCGA-D6-6516-01 14 92600677 92600677 C T CPSF2 Silent p.F131F 0.14 TCGA-D6-6516-01 14 93118295 93118295 C T RIN3 Missense_Mutation p.P301S 0.19 tolerated(0.49) unknown(0) TCGA-D6-6516-01 14 93483065 93483065 C T ITPK1 Missense_Mutation p.D68N 0.12 tolerated(0.11) possibly_damaging(0.552) TCGA-D6-6516-01 14 94004455 94004455 G A UNC79 Missense_Mutation p.E238K 0.27 tolerated(0.14) benign(0.184) TCGA-D6-6516-01 14 94041487 94041487 G A UNC79 Silent p.L541L 0.42 TCGA-D6-6516-01 14 94149038 94149038 G A UNC79 Missense_Mutation p.G2135R 0.27 tolerated(0.18) possibly_damaging(0.687) TCGA-D6-6516-01 14 94245575 94245575 G A PRIMA1 Missense_Mutation p.P59L 0.22 tolerated(0.48) benign(0.002) TCGA-D6-6516-01 14 94245576 94245576 G A PRIMA1 Missense_Mutation p.P59S 0.24 tolerated(0.31) benign(0.036) TCGA-D6-6516-01 14 94395247 94395247 G A FAM181A Missense_Mutation p.G268S 0.14 tolerated(0.14) possibly_damaging(0.58) TCGA-D6-6516-01 14 95030212 95030212 C T SERPINA4 Silent p.P131P 0.13 TCGA-D6-6516-01 14 95053761 95053761 G A SERPINA5 Missense_Mutation p.R21H 0.15 tolerated(0.11) benign(0.06) TCGA-D6-6516-01 14 96152888 96152888 G A TCL1B Silent p.E28E 0.19 TCGA-D6-6516-01 14 96707406 96707406 C T BDKRB2 Silent p.I247I 0.36 TCGA-D6-6516-01 14 96730397 96730397 C T BDKRB1 Silent p.F126F 0.22 TCGA-D6-6516-01 14 96875277 96875277 C T AK7 Missense_Mutation p.P166L 0.25 deleterious(0.03) benign(0.126) TCGA-D6-6516-01 15 100514651 100514651 C T ADAMTS17 Missense_Mutation p.D1082N 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D6-6516-01 15 101528995 101528995 C T LRRK1 Missense_Mutation p.P197L 0.68 deleterious(0.01) possibly_damaging(0.902) TCGA-D6-6516-01 15 101528996 101528996 C T LRRK1 Silent p.P197P 0.70 TCGA-D6-6516-01 15 101592030 101592030 T G LRRK1 Missense_Mutation p.V1185G 0.30 deleterious(0.04) benign(0.434) TCGA-D6-6516-01 15 101606368 101606368 C T LRRK1 Missense_Mutation p.A1909V 0.15 tolerated(0.13) probably_damaging(0.999) TCGA-D6-6516-01 15 101906410 101906410 C T PCSK6 Missense_Mutation p.E616K 0.32 tolerated(1) benign(0.015) TCGA-D6-6516-01 15 20657808 20657808 G A HERC2P3 RNA 0.12 TCGA-D6-6516-01 15 22368758 22368758 C T OR4M2 Silent p.F61F 0.23 TCGA-D6-6516-01 15 22473030 22473030 G A IGHV4OR15-8 Missense_Mutation p.P81S 0.14 tolerated(0.06) benign(0.261) TCGA-D6-6516-01 15 23889933 23889933 C T MAGEL2 Missense_Mutation p.G383E 0.25 tolerated(0.11) possibly_damaging(0.64) TCGA-D6-6516-01 15 24922239 24922239 G A NPAP1 Missense_Mutation p.D409N 0.15 tolerated(0.24) probably_damaging(0.909) TCGA-D6-6516-01 15 24922337 24922337 C T NPAP1 Silent p.I441I 0.18 TCGA-D6-6516-01 15 24922353 24922353 A C NPAP1 Missense_Mutation p.T447P 0.13 tolerated(0.19) possibly_damaging(0.887) TCGA-D6-6516-01 15 25219486 25219486 C T SNRPN 5'UTR 0.18 TCGA-D6-6516-01 15 25436451 25436451 G A SNORD115-11 3'Flank 0.24 TCGA-D6-6516-01 15 25453139 25453139 C T SNORD115-22 5'Flank 0.27 TCGA-D6-6516-01 15 25925040 25925040 C T ATP10A Silent p.R1316R 0.14 TCGA-D6-6516-01 15 25925041 25925041 C T ATP10A Missense_Mutation p.R1316K 0.14 tolerated(0.95) benign(0.001) TCGA-D6-6516-01 15 25953190 25953190 G A ATP10A Silent p.S836S 0.29 TCGA-D6-6516-01 15 25953191 25953191 G A ATP10A Missense_Mutation p.S836F 0.29 deleterious(0.02) benign(0.061) TCGA-D6-6516-01 15 26806283 26806283 G T GABRB3 Missense_Mutation p.H292Q 0.14 tolerated(0.14) probably_damaging(1) TCGA-D6-6516-01 15 28116344 28116344 G A OCA2 Silent p.L734L 0.18 TCGA-D6-6516-01 15 28358821 28358821 G A HERC2 Silent p.L4639L 0.20 TCGA-D6-6516-01 15 28465693 28465693 C T HERC2 Missense_Mutation p.R1917K 0.36 possibly_damaging(0.814) TCGA-D6-6516-01 15 28632778 28632778 G A GOLGA8F Missense_Mutation p.G449E 0.12 tolerated(1) benign(0.001) TCGA-D6-6516-01 15 30012590 30012590 G A TJP1 Missense_Mutation p.S912F 0.35 deleterious(0.03) possibly_damaging(0.62) TCGA-D6-6516-01 15 34072526 34072526 C T RYR3 Silent p.T3084T 0.16 TCGA-D6-6516-01 15 40627527 40627527 C T C15orf52 Silent p.Q479Q 0.38 TCGA-D6-6516-01 15 40627528 40627528 T C C15orf52 Missense_Mutation p.Q479R 0.36 tolerated(0.09) benign(0.022) TCGA-D6-6516-01 15 40659297 40659297 G A DISP2 Silent p.R328R 0.15 TCGA-D6-6516-01 15 40675113 40675113 C T KNSTRN Missense_Mutation p.P26L 0.42 tolerated_low_confidence(0.05) benign(0.009) TCGA-D6-6516-01 15 40751119 40751119 C T BAHD1 Silent p.H152H 0.40 TCGA-D6-6516-01 15 40915395 40915395 C T CASC5 Missense_Mutation p.S1004F 0.06 tolerated(0.2) benign(0.087) TCGA-D6-6516-01 15 40915396 40915396 C T CASC5 Silent p.S1004S 0.08 TCGA-D6-6516-01 15 40917521 40917521 C T CASC5 Nonsense_Mutation p.Q1713* 0.14 TCGA-D6-6516-01 15 41191637 41191637 C T VPS18 Silent p.S207S 0.20 TCGA-D6-6516-01 15 41687185 41687185 G A NDUFAF1 Missense_Mutation p.R211C 0.49 deleterious(0.02) probably_damaging(1) TCGA-D6-6516-01 15 41805298 41805298 G A LTK Missense_Mutation p.P22S 0.55 tolerated_low_confidence(0.61) benign(0) TCGA-D6-6516-01 15 42138473 42138473 C T PLA2G4B Missense_Mutation p.T789I 0.12 deleterious(0.03) probably_damaging(0.929) TCGA-D6-6516-01 15 42138474 42138474 C T PLA2G4B Silent p.T789T 0.12 TCGA-D6-6516-01 15 42149210 42149210 C T SPTBN5 Silent p.Q2883Q 0.30 TCGA-D6-6516-01 15 42192957 42192957 G A EHD4 Silent p.F504F 0.19 TCGA-D6-6516-01 15 43237418 43237418 G A UBR1 3'UTR 0.33 TCGA-D6-6516-01 15 43815393 43815393 G A MAP1A Silent p.Q574Q 0.49 TCGA-D6-6516-01 15 43819158 43819158 G A MAP1A Missense_Mutation p.M1829I 0.22 benign(0.029) TCGA-D6-6516-01 15 43873294 43873294 G A PPIP5K1 Missense_Mutation p.R323C 0.14 deleterious(0) probably_damaging(0.994) TCGA-D6-6516-01 15 44881481 44881481 G A SPG11 Silent p.L1625L 0.17 TCGA-D6-6516-01 15 45435411 45435411 G T DUOX1 Missense_Mutation p.V616F 0.10 deleterious(0.02) possibly_damaging(0.729) TCGA-D6-6516-01 15 45723009 45723009 A G C15orf48 Silent p.Q5Q 0.07 TCGA-D6-6516-01 15 45803391 45803391 C A SLC30A4 Missense_Mutation p.L161F 0.11 deleterious(0) possibly_damaging(0.907) TCGA-D6-6516-01 15 48058129 48058129 C T SEMA6D Silent p.H497H 0.17 TCGA-D6-6516-01 15 48460949 48460949 A T MYEF2 Nonsense_Mutation p.Y83* 0.14 TCGA-D6-6516-01 15 49030960 49030960 G A CEP152 Missense_Mutation p.P1540L 0.10 tolerated(0.11) benign(0.019) TCGA-D6-6516-01 15 49284871 49284871 G T SECISBP2L Missense_Mutation p.T959K 0.16 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 15 49436470 49436470 C T COPS2 Nonsense_Mutation p.W67* 0.32 TCGA-D6-6516-01 15 49800528 49800528 C T FAM227B Missense_Mutation p.G298S 0.08 tolerated(0.28) possibly_damaging(0.805) TCGA-D6-6516-01 15 51534993 51534993 C T CYP19A1 Nonsense_Mutation p.W39* 0.53 TCGA-D6-6516-01 15 53901735 53901735 G A WDR72 Missense_Mutation p.S976F 0.27 tolerated(0.19) possibly_damaging(0.807) TCGA-D6-6516-01 15 56535387 56535387 G A RFX7 Missense_Mutation p.L33F 0.13 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D6-6516-01 15 56756290 56756291 GC - MNS1 Frame_Shift_Del p.R53Qfs*10 0.30 TCGA-D6-6516-01 15 56981653 56981653 G A ZNF280D Missense_Mutation p.S172L 0.08 tolerated(0.6) benign(0.057) TCGA-D6-6516-01 15 59383308 59383308 C T RNF111 Silent p.S907S 0.15 TCGA-D6-6516-01 15 59752317 59752317 G A FAM81A Missense_Mutation p.G69E 0.17 tolerated(0.16) probably_damaging(0.997) TCGA-D6-6516-01 15 62165597 62165597 C T VPS13C Missense_Mutation p.G3476R 0.11 deleterious(0) probably_damaging(0.972) TCGA-D6-6516-01 15 63943520 63943520 G A HERC1 Missense_Mutation p.S3493F 0.28 benign(0.165) TCGA-D6-6516-01 15 64658188 64658188 G A KIAA0101 3'UTR 0.10 TCGA-D6-6516-01 15 65622173 65622173 C T IGDCC3 Missense_Mutation p.E630K 0.20 deleterious(0.04) benign(0.269) TCGA-D6-6516-01 15 66645208 66645209 GA - TIPIN Frame_Shift_Del p.F26Sfs*12 0.32 TCGA-D6-6516-01 15 68118621 68118621 G A SKOR1 Missense_Mutation p.G338D 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-D6-6516-01 15 69714072 69714072 C T KIF23 Silent p.D99D 0.10 TCGA-D6-6516-01 15 72141213 72141213 G T MYO9A Silent p.T2270T 0.15 TCGA-D6-6516-01 15 73028232 73028232 C A BBS4 Silent p.A391A 0.17 TCGA-D6-6516-01 15 73028238 73028238 C T BBS4 Silent p.A393A 0.46 TCGA-D6-6516-01 15 74365149 74365149 C T GOLGA6A Missense_Mutation p.E479K 0.14 deleterious(0.03) benign(0.046) TCGA-D6-6516-01 15 74425963 74425963 G A ISLR2 Missense_Mutation p.G290R 0.15 tolerated(0.52) benign(0.002) TCGA-D6-6516-01 15 74427025 74427025 G A ISLR2 Missense_Mutation p.D644N 0.24 tolerated(0.27) probably_damaging(0.989) TCGA-D6-6516-01 15 74467477 74467477 C T ISLR Missense_Mutation p.A93V 0.10 deleterious(0.01) possibly_damaging(0.657) TCGA-D6-6516-01 15 74565168 74565168 C T CCDC33 Missense_Mutation p.S232F 0.17 deleterious(0) benign(0.102) TCGA-D6-6516-01 15 75503393 75503393 C T C15orf39 Missense_Mutation p.S1027F 0.18 deleterious_low_confidence(0) benign(0.408) TCGA-D6-6516-01 15 75702498 75702498 G A SIN3A Silent p.L380L 0.16 TCGA-D6-6516-01 15 77906818 77906818 G A LINGO1 Silent p.F477F 0.12 TCGA-D6-6516-01 15 79277285 79277285 G A RASGRF1 Intron 0.58 TCGA-D6-6516-01 15 79750223 79750223 G A KIAA1024 Silent p.K578K 0.55 TCGA-D6-6516-01 15 81584977 81584977 C T IL16 Missense_Mutation p.R501C 0.18 deleterious(0) probably_damaging(0.944) TCGA-D6-6516-01 15 83226687 83226687 G A CPEB1 Silent p.P143P 0.62 TCGA-D6-6516-01 15 83226688 83226688 G A CPEB1 Missense_Mutation p.P143L 0.58 deleterious_low_confidence(0.04) benign(0.028) TCGA-D6-6516-01 15 83331552 83331552 G A AP3B2 Silent p.S890S 0.77 TCGA-D6-6516-01 15 83335576 83335576 C T AP3B2 Missense_Mutation p.G592D 0.32 tolerated(0.2) benign(0.008) TCGA-D6-6516-01 15 84568476 84568476 G A ADAMTSL3 Missense_Mutation p.E565K 0.73 deleterious(0.03) benign(0.362) TCGA-D6-6516-01 15 85382230 85382230 G T ALPK3 Silent p.V310V 0.36 TCGA-D6-6516-01 15 90167625 90167625 C T TICRR Missense_Mutation p.P1362S 0.26 tolerated(0.29) possibly_damaging(0.625) TCGA-D6-6516-01 15 90770854 90770854 C T SEMA4B Missense_Mutation p.S585F 0.26 tolerated(0.38) benign(0.002) TCGA-D6-6516-01 15 91769470 91769470 A G SV2B 5'UTR 0.50 TCGA-D6-6516-01 15 93527664 93527664 G A CHD2 Silent p.E1057E 0.79 TCGA-D6-6516-01 15 93527665 93527665 G A CHD2 Missense_Mutation p.E1058K 0.76 deleterious(0) benign(0.387) TCGA-D6-6516-01 15 97326937 97326937 G A SPATA8 Missense_Mutation p.E18K 0.30 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-D6-6516-01 15 99467122 99467122 C T IGF1R Missense_Mutation p.P835S 0.62 deleterious(0.05) possibly_damaging(0.764) TCGA-D6-6516-01 16 10851749 10851749 C T NUBP1 Silent p.L157L 0.07 TCGA-D6-6516-01 16 10989224 10989224 C T CIITA Silent p.C46C 0.21 TCGA-D6-6516-01 16 11001414 11001414 G A CIITA Missense_Mutation p.A689T 0.16 deleterious(0.03) benign(0.391) TCGA-D6-6516-01 16 11940618 11940618 A G RSL1D1 Missense_Mutation p.L156P 0.34 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 16 12136911 12136911 C T SNX29 Silent p.L135L 0.17 TCGA-D6-6516-01 16 14766451 14766451 C T PLA2G10 3'UTR 0.35 TCGA-D6-6516-01 16 15705498 15705498 G A KIAA0430 Nonsense_Mutation p.Q1190* 0.17 TCGA-D6-6516-01 16 17353019 17353019 G A XYLT1 Missense_Mutation p.P247S 0.33 tolerated(0.13) benign(0.071) TCGA-D6-6516-01 16 18795978 18795978 A T RPS15A Intron 0.36 TCGA-D6-6516-01 16 18823385 18823385 C T SMG1 Silent p.L3562L 0.19 TCGA-D6-6516-01 16 19236021 19236021 C T SYT17 Silent p.I363I 0.31 TCGA-D6-6516-01 16 19553958 19553958 C T CCP110 Missense_Mutation p.A748V 0.10 tolerated(0.14) benign(0.004) TCGA-D6-6516-01 16 20476956 20476956 G A ACSM2A Missense_Mutation p.G99R 0.24 tolerated(0.27) benign(0.061) TCGA-D6-6516-01 16 20487017 20487017 C T ACSM2A Silent p.S340S 0.15 TCGA-D6-6516-01 16 2049627 2049627 G A ZNF598 Silent p.A641A 0.18 TCGA-D6-6516-01 16 21208925 21208925 C T ZP2 Missense_Mutation p.G705E 0.11 tolerated(0.12) benign(0.055) TCGA-D6-6516-01 16 21213521 21213521 C T ZP2 Silent p.R397R 0.33 TCGA-D6-6516-01 16 2158531 2158531 G A PKD1 Missense_Mutation p.R2213W 0.33 probably_damaging(0.998) TCGA-D6-6516-01 16 2158532 2158532 G A PKD1 Silent p.S2212S 0.33 TCGA-D6-6516-01 16 2158553 2158553 G A PKD1 Silent p.A2205A 0.22 TCGA-D6-6516-01 16 23499976 23499976 G A GGA2 Missense_Mutation p.S177F 0.33 deleterious(0) probably_damaging(0.99) TCGA-D6-6516-01 16 23569515 23569515 C T UBFD1 Silent p.I90I 0.30 TCGA-D6-6516-01 16 23713533 23713533 C T ERN2 Silent p.G429G 0.35 TCGA-D6-6516-01 16 23713534 23713534 C T ERN2 Missense_Mutation p.G429E 0.35 tolerated(1) benign(0.009) TCGA-D6-6516-01 16 24922733 24922733 C T SLC5A11 Missense_Mutation p.P636L 0.35 deleterious(0.02) benign(0.002) TCGA-D6-6516-01 16 25264338 25264338 G A ZKSCAN2 Missense_Mutation p.P203S 0.14 tolerated(0.12) benign(0.01) TCGA-D6-6516-01 16 2546623 2546623 C T RP11-20I23.1 Silent p.I158I 0.23 TCGA-D6-6516-01 16 2813122 2813122 G T SRRM2 Missense_Mutation p.V865L 0.36 unknown(0) TCGA-D6-6516-01 16 28617420 28617420 G A SULT1A1 Silent p.P244P 0.06 TCGA-D6-6516-01 16 28617426 28617426 G A SULT1A1 Silent p.T242T 0.06 TCGA-D6-6516-01 16 28847705 28847705 C T ATXN2L Silent p.V1066V 0.12 TCGA-D6-6516-01 16 2946651 2946651 C T FLYWCH2 Silent p.S67S 0.39 TCGA-D6-6516-01 16 29675976 29675976 C T SPN Silent p.V309V 0.21 TCGA-D6-6516-01 16 29996845 29996845 C T TAOK2 Silent p.A578A 0.12 TCGA-D6-6516-01 16 29996846 29996846 C T TAOK2 Silent p.L579L 0.12 TCGA-D6-6516-01 16 3079404 3079404 C T CCDC64B Silent p.K328K 0.18 TCGA-D6-6516-01 16 30941539 30941539 C T FBXL19 Missense_Mutation p.S332F 0.19 tolerated(0.08) possibly_damaging(0.879) TCGA-D6-6516-01 16 30998163 30998163 C T HSD3B7 Silent p.V178V 0.12 TCGA-D6-6516-01 16 31046325 31046325 C T STX4 Silent p.N114N 0.13 TCGA-D6-6516-01 16 31414965 31414965 G A ITGAD Missense_Mutation p.V235M 0.28 deleterious(0.04) benign(0.203) TCGA-D6-6516-01 16 31421727 31421727 C T ITGAD Silent p.F365F 0.20 TCGA-D6-6516-01 16 32893854 32893854 C T RP11-989E6.3 5'Flank 0.13 TCGA-D6-6516-01 16 343668 343668 G A AXIN1 Missense_Mutation p.S669F 0.34 tolerated(0.17) benign(0.179) TCGA-D6-6516-01 16 3458635 3458635 C T ZNF174 Missense_Mutation p.L314F 0.19 deleterious(0.02) possibly_damaging(0.675) TCGA-D6-6516-01 16 3613075 3613075 G A NLRC3 Silent p.S668S 0.33 TCGA-D6-6516-01 16 3639210 3639210 G A SLX4 Missense_Mutation p.P1477S 0.16 tolerated(0.05) possibly_damaging(0.539) TCGA-D6-6516-01 16 396971 396971 C T AXIN1 Missense_Mutation p.D19N 0.39 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 16 4385175 4385175 G A GLIS2 Missense_Mutation p.G213S 0.38 deleterious(0.02) probably_damaging(1) TCGA-D6-6516-01 16 4385176 4385176 G T GLIS2 Missense_Mutation p.G213V 0.36 deleterious(0.02) probably_damaging(1) TCGA-D6-6516-01 16 47007592 47007592 G A DNAJA2 5'UTR 0.31 TCGA-D6-6516-01 16 47345268 47345268 G A ITFG1 Missense_Mutation p.P318L 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-D6-6516-01 16 48218385 48218385 G A ABCC11 Missense_Mutation p.S1075F 0.18 deleterious(0) possibly_damaging(0.839) TCGA-D6-6516-01 16 49430376 49430376 G A C16orf78 Missense_Mutation p.R146Q 0.35 deleterious(0) benign(0.242) TCGA-D6-6516-01 16 5055947 5055947 G A SEC14L5 Silent p.R445R 0.30 TCGA-D6-6516-01 16 5058637 5058637 G A SEC14L5 Silent p.G596G 0.35 TCGA-D6-6516-01 16 51173737 51173737 G A SALL1 Missense_Mutation p.P799L 0.34 deleterious(0.01) benign(0.189) TCGA-D6-6516-01 16 54319187 54319187 C T IRX3 Silent p.E202E 0.39 TCGA-D6-6516-01 16 55362877 55362877 C T IRX6 Silent p.F329F 0.32 TCGA-D6-6516-01 16 55364267 55364267 C T IRX6 3'UTR 0.16 TCGA-D6-6516-01 16 56377846 56377846 G A GNAO1 Missense_Mutation p.G350D 0.09 tolerated(1) benign(0.134) TCGA-D6-6516-01 16 57088699 57088699 C T NLRC5 Silent p.F1181F 0.17 TCGA-D6-6516-01 16 57151428 57151428 C T CPNE2 Silent p.S152S 0.22 TCGA-D6-6516-01 16 58287927 58287927 C T CCDC113 Missense_Mutation p.S85F 0.11 tolerated(0.4) possibly_damaging(0.568) TCGA-D6-6516-01 16 58537726 58537726 G A NDRG4 Missense_Mutation p.G68S 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-D6-6516-01 16 61859073 61859073 T A CDH8 Missense_Mutation p.K226N 0.28 deleterious(0) benign(0.423) TCGA-D6-6516-01 16 65006865 65006865 T C CDH11 Silent p.K444K 0.27 TCGA-D6-6516-01 16 66768138 66768138 C T DYNC1LI2 Missense_Mutation p.R259Q 0.22 deleterious(0) possibly_damaging(0.874) TCGA-D6-6516-01 16 67328009 67328009 C T KCTD19 Silent p.K552K 0.18 TCGA-D6-6516-01 16 67690200 67690200 C T RLTPR Missense_Mutation p.A1271V 0.20 deleterious(0) probably_damaging(0.993) TCGA-D6-6516-01 16 67694198 67694198 G A ACD Missense_Mutation p.L62F 0.17 tolerated_low_confidence(0.2) possibly_damaging(0.86) TCGA-D6-6516-01 16 67763288 67763288 G A RANBP10 Missense_Mutation p.S416F 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-D6-6516-01 16 67862093 67862093 G A CENPT 3'UTR 0.12 TCGA-D6-6516-01 16 71674608 71674608 C T MARVELD3 Missense_Mutation p.A304V 0.39 deleterious(0.04) benign(0.394) TCGA-D6-6516-01 16 71674609 71674609 C T MARVELD3 Silent p.A304A 0.43 TCGA-D6-6516-01 16 71784220 71784220 G A AP1G1 Missense_Mutation p.R437C 0.10 deleterious(0) probably_damaging(0.995) TCGA-D6-6516-01 16 74425686 74425686 C T NPIPB15 Missense_Mutation p.T347I 0.13 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-D6-6516-01 16 75301841 75301841 C T BCAR1 5'Flank 0.19 TCGA-D6-6516-01 16 76486564 76486564 G A CNTNAP4 Missense_Mutation p.E338K 0.20 tolerated(0.37) benign(0.029) TCGA-D6-6516-01 16 772743 772743 C T CCDC78 3'UTR 0.25 TCGA-D6-6516-01 16 77910306 77910306 C T VAT1L Silent p.L254L 0.18 TCGA-D6-6516-01 16 77918599 77918599 G A VAT1L Missense_Mutation p.G326D 0.25 tolerated(0.3) benign(0.009) TCGA-D6-6516-01 16 77918680 77918680 C T VAT1L Missense_Mutation p.S353F 0.13 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 16 78458951 78458951 C T WWOX Nonsense_Mutation p.R264* 0.31 TCGA-D6-6516-01 16 80646545 80646545 G A CDYL2 Missense_Mutation p.P399L 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 16 81045703 81045703 C T CENPN Silent p.I53I 0.12 TCGA-D6-6516-01 16 81134881 81134881 C T GCSH 5'Flank 0.18 TCGA-D6-6516-01 16 81725433 81725433 C T CMIP Missense_Mutation p.P481L 0.31 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 16 819554 819554 C T MSLNL Silent p.G1012G 0.17 TCGA-D6-6516-01 16 830222 830222 C T MSLNL Nonsense_Mutation p.W260* 0.39 TCGA-D6-6516-01 16 84256431 84256431 C T KCNG4 Missense_Mutation p.E318K 0.13 tolerated(0.42) benign(0.254) TCGA-D6-6516-01 16 84256561 84256561 G A KCNG4 Silent p.S274S 0.10 TCGA-D6-6516-01 16 85953824 85953824 C T IRF8 Silent p.L366L 0.30 TCGA-D6-6516-01 16 863384 863384 C T PRR25 Silent p.I244I 0.33 TCGA-D6-6516-01 16 86601078 86601078 A C FOXC2 Missense_Mutation p.E46A 0.12 deleterious(0) benign(0.156) TCGA-D6-6516-01 16 88061239 88061239 C T BANP Missense_Mutation p.S341F 0.07 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-D6-6516-01 16 8862733 8862733 C T ABAT Missense_Mutation p.S240F 0.34 deleterious(0) probably_damaging(0.989) TCGA-D6-6516-01 16 8862734 8862734 C T ABAT Silent p.S240S 0.34 TCGA-D6-6516-01 16 89341587 89341587 G A ANKRD11 Missense_Mutation p.P2495S 0.36 possibly_damaging(0.782) TCGA-D6-6516-01 16 89764657 89764657 G A SPATA2L Silent p.L120L 0.12 TCGA-D6-6516-01 16 9892181 9892181 G A GRIN2A Missense_Mutation p.P770L 0.31 tolerated(0.63) benign(0.01) TCGA-D6-6516-01 17 10205018 10205018 C T MYH13 Silent p.E1890E 0.15 TCGA-D6-6516-01 17 10206584 10206584 G A MYH13 Missense_Mutation p.L1866F 0.18 tolerated(0.15) benign(0.008) TCGA-D6-6516-01 17 10354694 10354694 G A MYH4 Missense_Mutation p.R1272C 0.21 deleterious(0) probably_damaging(0.988) TCGA-D6-6516-01 17 10358389 10358389 G A MYH4 Silent p.F768F 0.14 TCGA-D6-6516-01 17 10369997 10369997 C T MYH4 Silent p.K22K 0.19 TCGA-D6-6516-01 17 10402027 10402027 G A MYH1 Missense_Mutation p.S1366F 0.55 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 17 10408289 10408289 G T MYH1 Silent p.L843L 0.20 TCGA-D6-6516-01 17 10432160 10432160 G A MYH2 Silent p.T1197T 0.19 TCGA-D6-6516-01 17 10450897 10450897 G A MYH2 Silent p.N81N 0.59 TCGA-D6-6516-01 17 1183397 1183397 G A TUSC5 Silent p.E34E 0.19 TCGA-D6-6516-01 17 12847451 12847451 G A ARHGAP44 Missense_Mutation p.E267K 0.14 tolerated(0.06) benign(0.065) TCGA-D6-6516-01 17 1584266 1584266 G A PRPF8 Missense_Mutation p.P317S 0.18 deleterious(0.01) probably_damaging(0.931) TCGA-D6-6516-01 17 1584903 1584903 G A PRPF8 Silent p.L245L 0.21 TCGA-D6-6516-01 17 16342695 16342695 C T TRPV2 3'Flank 0.15 TCGA-D6-6516-01 17 16691328 16691328 C T CCDC144A 3'UTR 0.11 TCGA-D6-6516-01 17 1674431 1674431 C T SERPINF1 Missense_Mutation p.A131V 0.19 deleterious(0.05) benign(0.024) TCGA-D6-6516-01 17 17062129 17062129 C T MPRIP Missense_Mutation p.P620L 0.52 tolerated(0.39) benign(0.005) TCGA-D6-6516-01 17 17116981 17116981 C T FLCN Silent p.E576E 0.34 TCGA-D6-6516-01 17 18045392 18045392 G A MYO15A Splice_Site p.X1884_splice 0.63 TCGA-D6-6516-01 17 18566179 18566179 C T ZNF286B Missense_Mutation p.G214R 0.38 tolerated(0.26) benign(0.172) TCGA-D6-6516-01 17 19235287 19235287 C T EPN2 Silent p.S511S 0.15 TCGA-D6-6516-01 17 19247153 19247153 C T B9D1 Missense_Mutation p.R141Q 0.40 tolerated(0.06) benign(0.15) TCGA-D6-6516-01 17 20406460 20406460 C A RP11-434D2.7 3'Flank 0.40 TCGA-D6-6516-01 17 20911202 20911202 A G USP22 Missense_Mutation p.V404A 0.27 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 2323366 2323366 G A METTL16 Silent p.A529A 0.15 TCGA-D6-6516-01 17 26108184 26108184 G A NOS2 Missense_Mutation p.P248S 0.16 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 26881400 26881400 G A PIGS Silent p.F502F 0.21 TCGA-D6-6516-01 17 26902186 26902186 G A ALDOC Silent p.P93P 0.30 TCGA-D6-6516-01 17 27031548 27031548 C T PROCA1 Intron 0.22 TCGA-D6-6516-01 17 27309024 27309024 C T SEZ6 Missense_Mutation p.G30E 0.14 tolerated_low_confidence(0.3) benign(0.014) TCGA-D6-6516-01 17 28380879 28380879 A C EFCAB5 Missense_Mutation p.Q636P 0.23 tolerated(0.21) benign(0.004) TCGA-D6-6516-01 17 28748832 28748832 C T CPD Missense_Mutation p.L430F 0.15 deleterious(0.02) possibly_damaging(0.493) TCGA-D6-6516-01 17 29061819 29061819 G A CTD-2349P21.5 3'Flank 0.40 TCGA-D6-6516-01 17 29548871 29548871 C T NF1 Silent p.L549L 0.46 TCGA-D6-6516-01 17 2966431 2966431 G A OR1D5 Silent p.L157L 0.10 TCGA-D6-6516-01 17 3118956 3118956 C T OR1A1 Silent p.L14L 0.20 TCGA-D6-6516-01 17 33321400 33321400 G A LIG3 Missense_Mutation p.D521N 0.19 tolerated(0.35) benign(0.007) TCGA-D6-6516-01 17 33433486 33433486 C T RAD51D Silent p.R185R 0.33 TCGA-D6-6516-01 17 33679468 33679468 C T SLFN11 Silent p.R871R 0.17 TCGA-D6-6516-01 17 35783695 35783695 C T TADA2A Missense_Mutation p.P38S 0.21 tolerated(0.73) benign(0.009) TCGA-D6-6516-01 17 36876005 36876005 C T MLLT6 Missense_Mutation p.S671F 0.15 deleterious(0) unknown(0) TCGA-D6-6516-01 17 37564132 37564132 G A MED1 Missense_Mutation p.P1448S 0.22 deleterious_low_confidence(0) unknown(0) TCGA-D6-6516-01 17 37565007 37565007 G A MED1 Missense_Mutation p.S1156F 0.22 deleterious_low_confidence(0) unknown(0) TCGA-D6-6516-01 17 38145046 38145046 C T PSMD3 Silent p.F220F 0.12 TCGA-D6-6516-01 17 39114919 39114933 ATCCTTAATCTCCTT - KRT39 In_Frame_Del p.K466_D470del 0.36 TCGA-D6-6516-01 17 39138698 39138698 G A KRT40 Missense_Mutation p.S183F 0.16 deleterious(0) probably_damaging(0.966) TCGA-D6-6516-01 17 39140175 39140175 C T KRT40 Silent p.L117L 0.23 TCGA-D6-6516-01 17 39567635 39567635 C T AC003958.2 RNA 0.17 TCGA-D6-6516-01 17 39596777 39596777 C T KRT38 Missense_Mutation p.E133K 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 39596778 39596778 C T KRT38 Silent p.L132L 0.15 TCGA-D6-6516-01 17 39724598 39724598 G A KRT9 Missense_Mutation p.R404C 0.14 deleterious(0.03) benign(0.142) TCGA-D6-6516-01 17 39740157 39740157 C T KRT14 Missense_Mutation p.R261K 0.22 deleterious(0.05) benign(0.123) TCGA-D6-6516-01 17 39740512 39740512 C T KRT14 Silent p.E254E 0.09 TCGA-D6-6516-01 17 39740538 39740538 G A KRT14 Silent p.L246L 0.19 TCGA-D6-6516-01 17 3980240 3980240 G A ZZEF1 Silent p.S1011S 0.18 TCGA-D6-6516-01 17 40344298 40344298 C T GHDC Missense_Mutation p.G284R 0.12 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 40556780 40556780 G A PTRF Silent p.S366S 0.31 TCGA-D6-6516-01 17 40765002 40765002 C T TUBG1 Missense_Mutation p.P173S 0.16 deleterious(0.02) probably_damaging(1) TCGA-D6-6516-01 17 40832611 40832611 C T CCR10 Missense_Mutation p.D17N 0.15 tolerated(0.18) benign(0.001) TCGA-D6-6516-01 17 40832612 40832612 C T CCR10 Silent p.G16G 0.12 TCGA-D6-6516-01 17 41001235 41001235 C T AOC2 Missense_Mutation p.S574F 0.34 tolerated(0.4) benign(0.013) TCGA-D6-6516-01 17 41019426 41019426 C T AOC4P RNA 0.06 TCGA-D6-6516-01 17 41170069 41170069 C T VAT1 Silent p.K250K 0.23 TCGA-D6-6516-01 17 41290680 41290680 G A NBR2 RNA 0.23 TCGA-D6-6516-01 17 41605896 41605896 G A ETV4 Silent p.Y482Y 0.20 TCGA-D6-6516-01 17 42248418 42248418 G A ASB16 Silent p.V87V 0.07 TCGA-D6-6516-01 17 42248419 42248419 G A ASB16 Missense_Mutation p.E88K 0.07 deleterious(0.03) probably_damaging(0.955) TCGA-D6-6516-01 17 45234385 45234385 G A CDC27 Missense_Mutation p.P246S 0.09 tolerated(0.32) benign(0.001) TCGA-D6-6516-01 17 45368447 45368447 G A ITGB3 Missense_Mutation p.G418E 0.22 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 4620534 4620534 C T ARRB2 Missense_Mutation p.S148F 0.13 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 17 4620535 4620535 C T ARRB2 Silent p.S148S 0.13 TCGA-D6-6516-01 17 46622321 46622321 G A HOXB2 5'UTR 0.39 TCGA-D6-6516-01 17 46688330 46688330 G A HOXB7 5'UTR 0.33 TCGA-D6-6516-01 17 47797715 47797715 C T FAM117A Silent p.G182G 0.36 TCGA-D6-6516-01 17 48252743 48252743 G A SGCA Missense_Mutation p.R370Q 0.21 tolerated(0.42) benign(0.079) TCGA-D6-6516-01 17 48252744 48252744 G A SGCA Silent p.R370R 0.21 TCGA-D6-6516-01 17 48356592 48356592 G A TMEM92 Missense_Mutation p.E135K 0.13 deleterious(0.02) probably_damaging(0.971) TCGA-D6-6516-01 17 48450550 48450550 C T MRPL27 5'UTR 0.24 TCGA-D6-6516-01 17 48669144 48669144 G A CACNA1G Missense_Mutation p.R895Q 0.20 tolerated(0.35) benign(0.34) TCGA-D6-6516-01 17 49098644 49098644 G A SPAG9 Missense_Mutation p.P289L 0.18 tolerated(0.16) benign(0.027) TCGA-D6-6516-01 17 5042964 5042964 G A USP6 Missense_Mutation p.G498E 0.09 deleterious_low_confidence(0.01) benign(0.041) TCGA-D6-6516-01 17 51901498 51901498 G A KIF2B Silent p.L368L 0.12 TCGA-D6-6516-01 17 5323605 5323605 C T RPAIN Silent p.F25F 0.20 TCGA-D6-6516-01 17 5329615 5329615 C T RPAIN Missense_Mutation p.S162F 0.19 deleterious(0.05) benign(0.077) TCGA-D6-6516-01 17 5392534 5392534 C T MIS12 Nonsense_Mutation p.Q118* 0.22 TCGA-D6-6516-01 17 55184035 55184035 G A AKAP1 Missense_Mutation p.E404K 0.14 tolerated(0.11) benign(0.206) TCGA-D6-6516-01 17 56274318 56274318 C T EPX Missense_Mutation p.R274C 0.22 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 56280672 56280672 G A EPX Missense_Mutation p.G647R 0.35 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 17 56285488 56285488 G A MKS1 Silent p.F381F 0.14 TCGA-D6-6516-01 17 56435132 56435132 G A RNF43 Missense_Mutation p.P669S 0.17 tolerated_low_confidence(0.08) benign(0.04) TCGA-D6-6516-01 17 56620991 56620991 C T C17orf47 Missense_Mutation p.G186E 0.17 deleterious(0) probably_damaging(0.988) TCGA-D6-6516-01 17 56664947 56664947 C T TEX14 Nonsense_Mutation p.W934* 0.29 TCGA-D6-6516-01 17 56772564 56772564 T G RAD51C Intron 0.08 TCGA-D6-6516-01 17 58143574 58143574 G A HEATR6 Missense_Mutation p.P471L 0.51 deleterious(0) possibly_damaging(0.882) TCGA-D6-6516-01 17 58235145 58235145 T G CA4 Missense_Mutation p.V170G 0.10 deleterious(0) probably_damaging(0.992) TCGA-D6-6516-01 17 58539249 58539249 T A APPBP2 Missense_Mutation p.K286N 0.27 deleterious(0.02) probably_damaging(0.95) TCGA-D6-6516-01 17 58740467 58740467 C T PPM1D Nonsense_Mutation p.R458* 0.19 TCGA-D6-6516-01 17 61574518 61574518 C T ACE Missense_Mutation p.P1238S 0.26 tolerated(0.84) benign(0.003) TCGA-D6-6516-01 17 61957743 61957743 T G GH2 3'UTR 0.34 TCGA-D6-6516-01 17 62050171 62050171 G A SCN4A Missense_Mutation p.P11S 0.34 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-D6-6516-01 17 62479090 62479090 G A POLG2 Silent p.A379A 0.12 TCGA-D6-6516-01 17 62577101 62577101 G A SMURF2 Missense_Mutation p.S193F 0.14 tolerated(0.09) benign(0.001) TCGA-D6-6516-01 17 6364730 6364730 C T PITPNM3 Missense_Mutation p.R818Q 0.51 deleterious(0.01) probably_damaging(0.959) TCGA-D6-6516-01 17 64222175 64222175 G A APOH Silent p.P103P 0.47 TCGA-D6-6516-01 17 65105256 65105256 C T HELZ Missense_Mutation p.G1489R 0.13 deleterious_low_confidence(0) unknown(0) TCGA-D6-6516-01 17 65190132 65190132 G A HELZ Missense_Mutation p.P170S 0.33 tolerated(0.1) probably_damaging(0.974) TCGA-D6-6516-01 17 65715796 65715796 G A NOL11 Missense_Mutation p.D50N 0.31 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 6594098 6594098 C T SLC13A5 Missense_Mutation p.M479I 0.19 deleterious(0.01) possibly_damaging(0.596) TCGA-D6-6516-01 17 66352844 66352844 C T ARSG Silent p.L201L 0.22 TCGA-D6-6516-01 17 67124789 67124789 G A ABCA6 Missense_Mutation p.P364S 0.11 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 685749 685749 C T RNMTL1 Missense_Mutation p.S44F 0.13 tolerated(0.07) benign(0.002) TCGA-D6-6516-01 17 72310278 72310278 G A DNAI2 Missense_Mutation p.E581K 0.19 tolerated(0.33) unknown(0) TCGA-D6-6516-01 17 7250425 7250425 G A ACAP1 Missense_Mutation p.G403R 0.56 tolerated(0.12) benign(0.01) TCGA-D6-6516-01 17 72745105 72745105 G A SLC9A3R1 Silent p.R40R 0.12 TCGA-D6-6516-01 17 72843643 72843643 G A GRIN2C Missense_Mutation p.S602F 0.23 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 17 72916606 72916606 C T USH1G Missense_Mutation p.G109S 0.50 tolerated(0.37) possibly_damaging(0.455) TCGA-D6-6516-01 17 72950299 72950299 C T HID1 Missense_Mutation p.E600K 0.18 tolerated(0.09) possibly_damaging(0.593) TCGA-D6-6516-01 17 73257922 73257922 C A MRPS7 5'UTR 0.54 TCGA-D6-6516-01 17 74078486 74078486 C T EXOC7 3'UTR 0.17 TCGA-D6-6516-01 17 74151749 74151749 G A RNF157 Missense_Mutation p.T531I 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D6-6516-01 17 74276160 74276160 C T QRICH2 Missense_Mutation p.E1402K 0.13 deleterious(0.04) benign(0.317) TCGA-D6-6516-01 17 74475253 74475253 C T RHBDF2 Missense_Mutation p.A156T 0.24 tolerated(0.3) benign(0.21) TCGA-D6-6516-01 17 74621571 74621571 G A ST6GALNAC1 Silent p.R548R 0.53 TCGA-D6-6516-01 17 74732409 74732409 C A SRSF2 Missense_Mutation p.R167L 0.18 tolerated(0.18) unknown(0) TCGA-D6-6516-01 17 7478089 7478089 G A EIF4A1 Intron 0.19 TCGA-D6-6516-01 17 7577153 7577153 C A TP53 Missense_Mutation p.G262V 0.67 deleterious(0) probably_damaging(0.994) TCGA-D6-6516-01 17 76447632 76447632 G A DNAH17 Silent p.F3537F 0.28 TCGA-D6-6516-01 17 7721717 7721717 C T DNAH2 Missense_Mutation p.P3492L 0.13 probably_damaging(1) TCGA-D6-6516-01 17 78293249 78293249 C T RNF213 Intron 0.26 TCGA-D6-6516-01 17 78293250 78293250 C T RNF213 Intron 0.25 TCGA-D6-6516-01 17 78319833 78319833 C T RNF213 Silent p.Y2566Y 0.20 TCGA-D6-6516-01 17 78332094 78332094 C T RNF213 Silent p.T3623T 0.21 TCGA-D6-6516-01 17 7849045 7849045 G A CNTROB Splice_Site p.X579_splice 0.30 TCGA-D6-6516-01 17 7849046 7849046 G A CNTROB Missense_Mutation p.A579T 0.31 tolerated(0.37) benign(0.133) TCGA-D6-6516-01 17 7917309 7917309 C T GUCY2D Missense_Mutation p.P792L 0.10 deleterious(0) probably_damaging(0.995) TCGA-D6-6516-01 17 7918202 7918202 G A GUCY2D Missense_Mutation p.G868R 0.58 deleterious(0.03) probably_damaging(0.99) TCGA-D6-6516-01 17 79205555 79205555 G A ENTHD2 Intron 0.15 TCGA-D6-6516-01 17 79234188 79234188 G A SLC38A10 Silent p.L380L 0.30 TCGA-D6-6516-01 17 79477846 79477846 G A ACTG1 Missense_Mutation p.P333L 0.50 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D6-6516-01 17 79477847 79477847 G A ACTG1 Missense_Mutation p.P333S 0.50 deleterious_low_confidence(0.03) probably_damaging(0.985) TCGA-D6-6516-01 17 79536083 79536083 G A NPLOC4 Missense_Mutation p.P470S 0.17 tolerated(0.14) benign(0.02) TCGA-D6-6516-01 17 79612449 79612449 C T TSPAN10 Silent p.G156G 0.65 TCGA-D6-6516-01 17 79892293 79892293 C T PYCR1 Missense_Mutation p.G236R 0.20 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 17 79990328 79990328 C T RAC3 Missense_Mutation p.P34L 0.44 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D6-6516-01 17 80019150 80019150 G A DUS1L Silent p.I259I 0.30 TCGA-D6-6516-01 17 80046905 80046905 G A FASN Silent p.A748A 0.55 TCGA-D6-6516-01 17 80049491 80049491 G A FASN Missense_Mutation p.P367S 0.17 deleterious(0.02) possibly_damaging(0.577) TCGA-D6-6516-01 17 80622390 80622390 C T RAB40B Missense_Mutation p.R62Q 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6516-01 17 80708411 80708411 C T FN3K Missense_Mutation p.S237F 0.16 deleterious(0) probably_damaging(0.954) TCGA-D6-6516-01 17 8161418 8161418 C T PFAS Missense_Mutation p.P413S 0.24 tolerated(0.27) benign(0.016) TCGA-D6-6516-01 17 8169333 8169333 A C PFAS Missense_Mutation p.K900T 0.14 tolerated(0.4) benign(0.016) TCGA-D6-6516-01 17 8172385 8172385 C T PFAS Missense_Mutation p.P1274S 0.63 deleterious(0) probably_damaging(0.994) TCGA-D6-6516-01 17 915171 915171 C T ABR Silent p.E672E 0.25 TCGA-D6-6516-01 18 13884843 13884843 G A MC2R Silent p.L225L 0.38 TCGA-D6-6516-01 18 14543239 14543239 C T POTEC 5'Flank 0.16 TCGA-D6-6516-01 18 19995654 19995654 C T CTAGE1 Silent p.R707R 0.20 TCGA-D6-6516-01 18 21001409 21001409 C T TMEM241 Splice_Site p.X40_splice 0.21 TCGA-D6-6516-01 18 21395193 21395193 G A LAMA3 Missense_Mutation p.E644K 0.25 probably_damaging(0.936) TCGA-D6-6516-01 18 25570168 25570168 A G CDH2 Silent p.F497F 0.23 TCGA-D6-6516-01 18 29706662 29706662 C T RNF138 Missense_Mutation p.P190S 0.21 deleterious(0.01) probably_damaging(0.957) TCGA-D6-6516-01 18 30091872 30091872 C T WBP11P1 RNA 0.22 TCGA-D6-6516-01 18 31319226 31319226 G A ASXL3 Missense_Mutation p.G620R 0.32 possibly_damaging(0.71) TCGA-D6-6516-01 18 31432930 31432930 C T NOL4 Missense_Mutation p.R598K 0.21 tolerated(0.84) benign(0.31) TCGA-D6-6516-01 18 3187612 3187612 A C MYOM1 Missense_Mutation p.H265Q 0.22 tolerated(0.17) benign(0.04) TCGA-D6-6516-01 18 33704511 33704511 G A SLC39A6 Silent p.I314I 0.18 TCGA-D6-6516-01 18 3534553 3534553 G A DLGAP1 Silent p.F706F 0.23 TCGA-D6-6516-01 18 43460176 43460176 T A EPG5 Missense_Mutation p.Q1844L 0.16 deleterious(0) possibly_damaging(0.888) TCGA-D6-6516-01 18 43464702 43464702 G A EPG5 Silent p.S1728S 0.33 TCGA-D6-6516-01 18 43464703 43464703 G A EPG5 Missense_Mutation p.S1728F 0.31 deleterious(0.01) probably_damaging(0.983) TCGA-D6-6516-01 18 44561204 44561204 C T TCEB3B Silent p.P144P 0.16 TCGA-D6-6516-01 18 44595966 44595966 G A KATNAL2 Missense_Mutation p.V263I 0.20 tolerated(0.16) probably_damaging(0.946) TCGA-D6-6516-01 18 47376030 47376030 C - MYO5B Frame_Shift_Del p.D1408Tfs*6 0.18 TCGA-D6-6516-01 18 50866165 50866165 G A DCC Silent p.L749L 0.24 TCGA-D6-6516-01 18 56246869 56246869 C T ALPK2 Missense_Mutation p.G380E 0.38 tolerated(1) benign(0) TCGA-D6-6516-01 18 56985658 56985658 C T CPLX4 Missense_Mutation p.V13I 0.20 tolerated(0.06) benign(0.005) TCGA-D6-6516-01 18 56985659 56985659 C T CPLX4 Silent p.Q12Q 0.20 TCGA-D6-6516-01 18 59912005 59912005 C T KIAA1468 Silent p.I543I 0.27 TCGA-D6-6516-01 18 60795881 60795881 C T BCL2 Missense_Mutation p.G233S 0.23 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 18 6239847 6239847 G A L3MBTL4 Nonsense_Mutation p.Q193* 0.13 TCGA-D6-6516-01 18 74154069 74154069 G A ZNF516 Silent p.P314P 0.14 TCGA-D6-6516-01 18 74154400 74154400 A C ZNF516 Missense_Mutation p.L204R 0.23 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 18 77464883 77464883 C T CTDP1 Silent p.T246T 0.23 TCGA-D6-6516-01 18 8376134 8376134 G A PTPRM Missense_Mutation p.G1088R 0.14 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 18 8376135 8376135 G A PTPRM Missense_Mutation p.G1088E 0.14 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 18 9211708 9211708 C T ANKRD12 Missense_Mutation p.A193V 0.18 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 18 9258557 9258557 C T ANKRD12 Silent p.S1764S 0.19 TCGA-D6-6516-01 18 9513018 9513018 C T RALBP1 5'UTR 0.17 TCGA-D6-6516-01 18 9570373 9570373 A T PPP4R1 Nonsense_Mutation p.L452* 0.20 TCGA-D6-6516-01 18 9887690 9887690 C T TXNDC2 Missense_Mutation p.P405L 0.13 tolerated(0.18) benign(0.208) TCGA-D6-6516-01 19 10106788 10106788 G A COL5A3 Missense_Mutation p.P496L 0.21 unknown(0) TCGA-D6-6516-01 19 1036075 1036075 C T CNN2 Intron 0.22 TCGA-D6-6516-01 19 10428229 10428229 C T RAVER1 Silent p.S724S 0.33 TCGA-D6-6516-01 19 1049288 1049288 G A ABCA7 Missense_Mutation p.G802S 0.35 tolerated(0.16) benign(0.067) TCGA-D6-6516-01 19 1056930 1056930 C T ABCA7 Silent p.L1537L 0.29 TCGA-D6-6516-01 19 10578238 10578238 G A PDE4A Missense_Mutation p.E868K 0.44 tolerated_low_confidence(0.1) benign(0.126) TCGA-D6-6516-01 19 11526779 11526779 C T RGL3 Silent p.Q157Q 0.27 TCGA-D6-6516-01 19 11728614 11728614 T C ZNF627 Silent p.T432T 0.39 TCGA-D6-6516-01 19 12090196 12090196 C G ZNF763 3'UTR 0.12 TCGA-D6-6516-01 19 12090607 12090607 C T ZNF763 3'UTR 0.18 TCGA-D6-6516-01 19 12502624 12502624 A C ZNF799 Silent p.P196P 0.21 TCGA-D6-6516-01 19 12902926 12902926 G A JUNB Missense_Mutation p.G114E 0.25 deleterious(0.02) probably_damaging(0.982) TCGA-D6-6516-01 19 13010622 13010622 C T GCDH 3'UTR 0.45 TCGA-D6-6516-01 19 13223747 13223747 G A TRMT1 Silent p.T240T 0.17 TCGA-D6-6516-01 19 14070848 14070848 C T DCAF15 Missense_Mutation p.A498V 0.19 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 19 14070849 14070849 C T DCAF15 Silent p.A498A 0.18 TCGA-D6-6516-01 19 14554311 14554311 C T PKN1 Missense_Mutation p.P124S 0.33 tolerated(0.3) benign(0.002) TCGA-D6-6516-01 19 15533818 15533818 G A WIZ 3'UTR 0.35 TCGA-D6-6516-01 19 16611992 16611992 G A C19orf44 Missense_Mutation p.R130K 0.28 tolerated(0.98) benign(0.067) TCGA-D6-6516-01 19 16612055 16612055 C T C19orf44 Missense_Mutation p.S151F 0.53 tolerated(0.14) benign(0.01) TCGA-D6-6516-01 19 17104264 17104264 G A CPAMD8 Missense_Mutation p.P457S 0.29 deleterious(0) probably_damaging(0.984) TCGA-D6-6516-01 19 17476205 17476205 C T PLVAP Missense_Mutation p.E357K 0.51 deleterious(0) probably_damaging(0.924) TCGA-D6-6516-01 19 17838435 17838435 C T MAP1S Missense_Mutation p.R748C 0.26 tolerated(0.13) probably_damaging(0.997) TCGA-D6-6516-01 19 18182998 18182998 G A IL12RB1 Silent p.N315N 0.34 TCGA-D6-6516-01 19 18241341 18241341 C A MAST3 Missense_Mutation p.R392S 0.23 deleterious(0) probably_damaging(0.973) TCGA-D6-6516-01 19 18888248 18888248 G A CRTC1 3'UTR 0.13 TCGA-D6-6516-01 19 19337547 19337547 C T NCAN Missense_Mutation p.P442L 0.19 tolerated(0.12) benign(0.212) TCGA-D6-6516-01 19 1987221 1987221 C T BTBD2 Missense_Mutation p.G405R 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-D6-6516-01 19 20045711 20045711 C T ZNF93 3'UTR 0.30 TCGA-D6-6516-01 19 20844313 20844313 G A ZNF626 5'UTR 0.55 TCGA-D6-6516-01 19 2096977 2096977 G T IZUMO4 Silent p.T11T 0.24 TCGA-D6-6516-01 19 22363931 22363931 G A ZNF676 Silent p.P196P 0.41 TCGA-D6-6516-01 19 22940685 22940685 G A ZNF99 Missense_Mutation p.P676S 0.50 deleterious(0.05) benign(0.155) TCGA-D6-6516-01 19 22941815 22941815 T G ZNF99 Missense_Mutation p.H299P 0.27 tolerated(0.18) benign(0.364) TCGA-D6-6516-01 19 29698650 29698650 C T UQCRFS1 Nonsense_Mutation p.W210* 0.23 TCGA-D6-6516-01 19 30503326 30503326 T G URI1 Missense_Mutation p.L438W 0.25 deleterious(0.01) possibly_damaging(0.88) TCGA-D6-6516-01 19 3293509 3293509 C T CELF5 Intron 0.23 TCGA-D6-6516-01 19 33493156 33493156 G A RHPN2 Nonsense_Mutation p.Q368* 0.31 TCGA-D6-6516-01 19 34262944 34262944 C T CHST8 Missense_Mutation p.P84L 0.16 tolerated(0.1) possibly_damaging(0.56) TCGA-D6-6516-01 19 3462840 3462840 C T NFIC 3'UTR 0.14 TCGA-D6-6516-01 19 34710646 34710646 G A LSM14A Missense_Mutation p.G334S 0.31 tolerated(0.07) benign(0.435) TCGA-D6-6516-01 19 35175542 35175542 C T ZNF302 Silent p.I200I 0.19 TCGA-D6-6516-01 19 35449808 35449808 T C ZNF792 Silent p.K317K 0.21 TCGA-D6-6516-01 19 35524699 35524699 G A SCN1B Silent p.R168R 0.15 TCGA-D6-6516-01 19 35715962 35715962 G A FAM187B Silent p.L292L 0.18 TCGA-D6-6516-01 19 35941446 35941446 C G FFAR2 Missense_Mutation p.S277C 0.23 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 19 36250286 36250286 T G C19orf55 Missense_Mutation p.F8C 0.13 deleterious(0) probably_damaging(0.964) TCGA-D6-6516-01 19 36351440 36351440 C T KIRREL2 Missense_Mutation p.P267S 0.29 tolerated(0.06) benign(0.067) TCGA-D6-6516-01 19 36353414 36353414 G A KIRREL2 Silent p.R510R 0.17 TCGA-D6-6516-01 19 36573967 36573967 C T WDR62 Silent p.T458T 0.26 TCGA-D6-6516-01 19 36573968 36573968 C T WDR62 Silent p.L459L 0.24 TCGA-D6-6516-01 19 3760025 3760025 G A APBA3 Missense_Mutation p.P80S 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D6-6516-01 19 37618342 37618342 G A ZNF420 Missense_Mutation p.R150Q 0.21 tolerated(0.62) benign(0.045) TCGA-D6-6516-01 19 37678053 37678053 G A ZNF585B Missense_Mutation p.S129F 0.14 tolerated(0.11) benign(0.003) TCGA-D6-6516-01 19 37880348 37880348 G A ZNF527 Missense_Mutation p.G466E 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 19 38189304 38189304 G A ZNF607 Silent p.L576L 0.19 TCGA-D6-6516-01 19 38655373 38655373 C G SIPA1L3 Silent p.G1345G 0.17 TCGA-D6-6516-01 19 38795209 38795209 C T C19orf33 Intron 0.25 TCGA-D6-6516-01 19 38847129 38847129 C T CATSPERG Nonsense_Mutation p.Q381* 0.15 TCGA-D6-6516-01 19 38858334 38858334 G A CATSPERG Missense_Mutation p.V950M 0.21 deleterious(0) possibly_damaging(0.781) TCGA-D6-6516-01 19 38871607 38871607 C T PSMD8 Silent p.T257T 0.27 TCGA-D6-6516-01 19 38877078 38877078 C T GGN Missense_Mutation p.G275D 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-D6-6516-01 19 39369801 39369801 G A SIRT2 Silent p.P388P 0.34 TCGA-D6-6516-01 19 3964694 3964694 G A DAPK3 Missense_Mutation p.L120F 0.11 deleterious(0) probably_damaging(0.914) TCGA-D6-6516-01 19 39664427 39664427 C T PAK4 Missense_Mutation p.P292L 0.41 deleterious(0.01) possibly_damaging(0.908) TCGA-D6-6516-01 19 39691262 39691262 C T NCCRP1 Missense_Mutation p.H232Y 0.23 deleterious(0.04) probably_damaging(0.989) TCGA-D6-6516-01 19 39735638 39735638 G A IFNL3 5'UTR 0.45 TCGA-D6-6516-01 19 3977901 3977901 G A EEF2 Silent p.I661I 0.19 TCGA-D6-6516-01 19 39804666 39804666 G A LRFN1 Silent p.S437S 0.25 TCGA-D6-6516-01 19 39819053 39819053 G A GMFG 3'UTR 0.18 TCGA-D6-6516-01 19 39880374 39880374 C T PAF1 Silent p.L66L 0.16 TCGA-D6-6516-01 19 39915563 39915563 C T PLEKHG2 Missense_Mutation p.P1264S 0.15 tolerated_low_confidence(0.16) benign(0.196) TCGA-D6-6516-01 19 39915564 39915564 C T PLEKHG2 Missense_Mutation p.P1264L 0.15 tolerated_low_confidence(1) benign(0.004) TCGA-D6-6516-01 19 40097949 40097949 C A LGALS13 Silent p.I130I 0.38 TCGA-D6-6516-01 19 40318203 40318203 A C DYRK1B Missense_Mutation p.C301G 0.08 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 19 4037787 4037787 G A PIAS4 Missense_Mutation p.E483K 0.33 tolerated(0.42) benign(0.049) TCGA-D6-6516-01 19 40520411 40520411 C T ZNF546 Missense_Mutation p.P412S 0.40 deleterious(0.02) possibly_damaging(0.787) TCGA-D6-6516-01 19 40520412 40520412 C T ZNF546 Missense_Mutation p.P412L 0.40 deleterious(0.01) probably_damaging(0.929) TCGA-D6-6516-01 19 40762855 40762855 G A AKT2 Silent p.P51P 0.16 TCGA-D6-6516-01 19 40900834 40900834 C T PRX Missense_Mutation p.G1142E 0.20 tolerated(0.96) probably_damaging(0.969) TCGA-D6-6516-01 19 4155015 4155015 C T CREB3L3 Silent p.V49V 0.18 TCGA-D6-6516-01 19 41622463 41622463 G A CYP2F1 Missense_Mutation p.G92E 0.21 deleterious(0.01) benign(0.046) TCGA-D6-6516-01 19 41809897 41809897 G T HNRNPUL1 Missense_Mutation p.G665C 0.37 deleterious(0) unknown(0) TCGA-D6-6516-01 19 41916736 41916736 C T BCKDHA Intron 0.20 TCGA-D6-6516-01 19 42399446 42399446 G A ARHGEF1 Missense_Mutation p.R316Q 0.18 tolerated(0.08) possibly_damaging(0.643) TCGA-D6-6516-01 19 42598031 42598031 C T POU2F2 Missense_Mutation p.G383D 0.16 tolerated(0.14) benign(0.23) TCGA-D6-6516-01 19 42794462 42794462 C T CIC Silent p.P514P 0.24 TCGA-D6-6516-01 19 43026182 43026182 G A CEACAM1 Silent p.T199T 0.14 TCGA-D6-6516-01 19 43709670 43709670 G A PSG4 Missense_Mutation p.P7S 0.10 deleterious(0.02) possibly_damaging(0.503) TCGA-D6-6516-01 19 44223319 44223319 G A IRGC Silent p.R203R 0.12 TCGA-D6-6516-01 19 44352877 44352877 A G ZNF283 3'UTR 0.17 TCGA-D6-6516-01 19 44466927 44466927 C T ZNF221 Missense_Mutation p.P17S 0.29 tolerated(0.17) possibly_damaging(0.857) TCGA-D6-6516-01 19 44777200 44777200 G A ZNF233 Silent p.K129K 0.12 TCGA-D6-6516-01 19 44891169 44891169 G A ZNF285 Missense_Mutation p.S413F 0.16 tolerated(0.07) probably_damaging(0.969) TCGA-D6-6516-01 19 44891417 44891417 G A ZNF285 Silent p.S330S 0.23 TCGA-D6-6516-01 19 44981195 44981195 G A ZNF180 Silent p.S501S 0.24 TCGA-D6-6516-01 19 45179627 45179627 G C CEACAM19 Missense_Mutation p.G170A 0.35 tolerated(0.18) possibly_damaging(0.772) TCGA-D6-6516-01 19 45209024 45209024 G A CEACAM16 Missense_Mutation p.D276N 0.30 tolerated(0.06) probably_damaging(0.945) TCGA-D6-6516-01 19 4529733 4529733 C T PLIN5 Intron 0.30 TCGA-D6-6516-01 19 4538433 4538433 G A LRG1 Missense_Mutation p.T188I 0.23 deleterious(0.05) benign(0.248) TCGA-D6-6516-01 19 45496109 45496109 C T CLPTM1 Missense_Mutation p.P655L 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-D6-6516-01 19 45681442 45681442 G A TRAPPC6A Missense_Mutation p.T12M 0.17 tolerated(0.72) benign(0.077) TCGA-D6-6516-01 19 45856009 45856009 G A ERCC2 Missense_Mutation p.L633F 0.47 deleterious(0.02) possibly_damaging(0.582) TCGA-D6-6516-01 19 45885876 45885876 G A PPP1R13L Missense_Mutation p.T786I 0.17 deleterious(0.01) possibly_damaging(0.767) TCGA-D6-6516-01 19 46137675 46137675 C T EML2 Silent p.G279G 0.26 TCGA-D6-6516-01 19 46268599 46268599 G A SIX5 3'UTR 0.19 TCGA-D6-6516-01 19 46318152 46318152 G A RSPH6A Missense_Mutation p.P95S 0.17 tolerated_low_confidence(0.09) benign(0.015) TCGA-D6-6516-01 19 4697574 4697574 C T DPP9 Silent p.R388R 0.19 TCGA-D6-6516-01 19 47231181 47231181 G A STRN4 Missense_Mutation p.P375S 0.21 tolerated(0.6) benign(0.173) TCGA-D6-6516-01 19 47503696 47503696 C A ARHGAP35 Silent p.A1417A 0.22 TCGA-D6-6516-01 19 47503753 47503753 C T ARHGAP35 Silent p.F1436F 0.16 TCGA-D6-6516-01 19 47570606 47570606 G A ZC3H4 Silent p.F973F 0.18 TCGA-D6-6516-01 19 47597293 47597293 G A ZC3H4 Silent p.D142D 0.45 TCGA-D6-6516-01 19 48255849 48255849 C T GLTSCR2 Silent p.S250S 0.25 TCGA-D6-6516-01 19 49310269 49310269 G A BCAT2 Silent p.S29S 0.10 TCGA-D6-6516-01 19 49310270 49310270 G A BCAT2 Missense_Mutation p.S29F 0.12 deleterious(0.04) benign(0.035) TCGA-D6-6516-01 19 49387077 49387077 C T TULP2 Silent p.R403R 0.23 TCGA-D6-6516-01 19 49514284 49514284 C T RUVBL2 Silent p.V272V 0.12 TCGA-D6-6516-01 19 49539417 49539417 G A CGB1 Silent p.I51I 0.13 TCGA-D6-6516-01 19 49812599 49812599 C T SLC6A16 Missense_Mutation p.E316K 0.13 tolerated(0.17) possibly_damaging(0.562) TCGA-D6-6516-01 19 49814231 49814231 C A SLC6A16 Missense_Mutation p.C125F 0.25 deleterious(0.02) benign(0.045) TCGA-D6-6516-01 19 50099247 50099247 C T PRR12 Missense_Mutation p.S552F 0.10 possibly_damaging(0.683) TCGA-D6-6516-01 19 50390808 50390808 C T TBC1D17 Missense_Mutation p.P507L 0.30 tolerated(0.35) possibly_damaging(0.512) TCGA-D6-6516-01 19 50434207 50434207 C T ATF5 Missense_Mutation p.P34S 0.17 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-D6-6516-01 19 50780155 50780155 G A MYH14 Silent p.R1274R 0.15 TCGA-D6-6516-01 19 50926874 50926874 C T SPIB Missense_Mutation p.P118S 0.17 tolerated(0.39) benign(0.003) TCGA-D6-6516-01 19 51051874 51051874 C T LRRC4B Silent p.R74R 0.18 TCGA-D6-6516-01 19 51133093 51133093 G A SYT3 Missense_Mutation p.P337L 0.11 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 19 51133094 51133094 G A SYT3 Missense_Mutation p.P337S 0.11 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 19 51133335 51133335 G A SYT3 Silent p.P256P 0.14 TCGA-D6-6516-01 19 51322440 51322440 G A KLK1 3'UTR 0.31 TCGA-D6-6516-01 19 51322539 51322539 G C KLK1 Missense_Mutation p.P234A 0.15 deleterious(0) probably_damaging(0.963) TCGA-D6-6516-01 19 51563854 51563854 C T KLK13 Silent p.K25K 0.37 TCGA-D6-6516-01 19 51918579 51918579 C T SIGLEC10 Missense_Mutation p.G396R 0.30 tolerated(0.37) benign(0.049) TCGA-D6-6516-01 19 51919992 51919992 C T SIGLEC10 Missense_Mutation p.D212N 0.44 tolerated(0.45) benign(0.004) TCGA-D6-6516-01 19 5220306 5220306 G A PTPRS Missense_Mutation p.P1172S 0.17 tolerated(0.13) benign(0.014) TCGA-D6-6516-01 19 52272633 52272633 G A FPR2 Missense_Mutation p.R241Q 0.15 tolerated(0.06) possibly_damaging(0.627) TCGA-D6-6516-01 19 52327767 52327767 C T FPR3 Missense_Mutation p.P256S 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-D6-6516-01 19 52376138 52376138 G A ZNF577 Missense_Mutation p.L369F 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-D6-6516-01 19 52496734 52496734 C T ZNF615 Missense_Mutation p.R543Q 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-D6-6516-01 19 53015077 53015077 A G ZNF578 Silent p.K481K 0.25 TCGA-D6-6516-01 19 53050850 53050850 G T ZNF808 Missense_Mutation p.R50M 0.10 deleterious(0) probably_damaging(0.99) TCGA-D6-6516-01 19 53383907 53383907 G A ZNF320 Missense_Mutation p.P491L 0.10 deleterious(0) benign(0.119) TCGA-D6-6516-01 19 53625965 53625965 C T ZNF415 Intron 0.24 TCGA-D6-6516-01 19 53668984 53668984 C T ZNF665 Silent p.Q253Q 0.13 TCGA-D6-6516-01 19 53875615 53875615 G A ZNF525 Intron 0.46 TCGA-D6-6516-01 19 53911563 53911563 T A ZNF765 Missense_Mutation p.F252Y 0.10 deleterious(0.03) probably_damaging(1) TCGA-D6-6516-01 19 53945927 53945927 C T TPM3P9 RNA 0.57 TCGA-D6-6516-01 19 54257317 54257317 G C MIR527 RNA 0.39 TCGA-D6-6516-01 19 54297211 54297211 G A NLRP12 3'UTR 0.19 TCGA-D6-6516-01 19 54327227 54327227 C T NLRP12 Missense_Mutation p.E68K 0.15 tolerated(0.96) benign(0.076) TCGA-D6-6516-01 19 54394978 54394978 C T PRKCG Missense_Mutation p.P194S 0.31 deleterious(0) probably_damaging(0.993) TCGA-D6-6516-01 19 54444857 54444857 C T CACNG7 Silent p.F186F 0.27 TCGA-D6-6516-01 19 54760510 54760510 G A LILRB5 Missense_Mutation p.P66L 0.45 tolerated(0.13) benign(0.05) TCGA-D6-6516-01 19 54802615 54802615 C T LILRA3 Missense_Mutation p.G276R 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-D6-6516-01 19 54848307 54848307 G A LILRA4 Missense_Mutation p.L354F 0.14 tolerated(0.11) benign(0.346) TCGA-D6-6516-01 19 54973853 54973853 G A LENG9 Missense_Mutation p.A308V 0.15 tolerated(0.19) benign(0.008) TCGA-D6-6516-01 19 55086387 55086387 C T LILRA2 Missense_Mutation p.S181F 0.30 tolerated(0.05) possibly_damaging(0.698) TCGA-D6-6516-01 19 55086388 55086388 C T LILRA2 Silent p.S181S 0.30 TCGA-D6-6516-01 19 55106754 55106754 C T LILRA1 Missense_Mutation p.S183F 0.42 deleterious(0.02) benign(0.138) TCGA-D6-6516-01 19 55112376 55112376 G A LILRA1 3'UTR 0.39 TCGA-D6-6516-01 19 55148338 55148338 G A LILRB1 3'UTR 0.25 TCGA-D6-6516-01 19 55220847 55220847 C T AC098784.2 3'Flank 0.16 TCGA-D6-6516-01 19 55221393 55221393 G A AC098784.2 3'Flank 0.39 TCGA-D6-6516-01 19 55317451 55317451 T C KIR2DL4 Missense_Mutation p.V136A 0.30 deleterious(0.03) probably_damaging(0.957) TCGA-D6-6516-01 19 55340822 55340822 C T KIR3DL1 Missense_Mutation p.P336L 0.55 tolerated(0.08) benign(0.001) TCGA-D6-6516-01 19 55439046 55439046 G A NLRP7 Missense_Mutation p.H970Y 0.38 tolerated(1) benign(0.172) TCGA-D6-6516-01 19 55493546 55493546 C A NLRP2 Nonsense_Mutation p.C160* 0.28 TCGA-D6-6516-01 19 55493547 55493547 A C NLRP2 Silent p.R161R 0.27 TCGA-D6-6516-01 19 55667649 55667649 G A TNNI3 Missense_Mutation p.R68W 0.08 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 19 55758261 55758261 C A PPP6R1 Nonsense_Mutation p.E71* 0.14 TCGA-D6-6516-01 19 56103957 56103957 G A FIZ1 Silent p.F450F 0.12 TCGA-D6-6516-01 19 56160311 56160311 G A CCDC106 5'UTR 0.28 TCGA-D6-6516-01 19 56244136 56244136 C T NLRP9 Missense_Mutation p.G354E 0.37 tolerated(0.12) probably_damaging(0.998) TCGA-D6-6516-01 19 56297047 56297047 G A NLRP11 Missense_Mutation p.P1016S 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D6-6516-01 19 56319270 56319270 C T NLRP11 Missense_Mutation p.R651K 0.11 tolerated(0.28) possibly_damaging(0.533) TCGA-D6-6516-01 19 56320316 56320316 C T NLRP11 Missense_Mutation p.E554K 0.14 deleterious(0.04) benign(0.017) TCGA-D6-6516-01 19 56363573 56363573 C T NLRP4 Missense_Mutation p.P43S 0.38 tolerated(0.49) possibly_damaging(0.889) TCGA-D6-6516-01 19 56370046 56370046 C T NLRP4 Silent p.I429I 0.29 TCGA-D6-6516-01 19 56423283 56423283 G A NLRP13 Missense_Mutation p.H634Y 0.40 deleterious(0.05) benign(0.091) TCGA-D6-6516-01 19 56515092 56515092 C T NLRP5 Missense_Mutation p.L25F 0.26 tolerated_low_confidence(0.07) possibly_damaging(0.902) TCGA-D6-6516-01 19 56691959 56691959 G A GALP Missense_Mutation p.R31Q 0.29 tolerated(0.09) benign(0.004) TCGA-D6-6516-01 19 56896527 56896527 C T ZNF582 Missense_Mutation p.E87K 0.22 tolerated(1) benign(0.01) TCGA-D6-6516-01 19 56896528 56896528 C T ZNF582 Silent p.K86K 0.22 TCGA-D6-6516-01 19 56934474 56934474 C T ZNF583 Silent p.I149I 0.11 TCGA-D6-6516-01 19 56934475 56934475 C T ZNF583 Missense_Mutation p.L150F 0.11 tolerated(0.41) benign(0.001) TCGA-D6-6516-01 19 56953821 56953821 G A ZNF667 Silent p.F181F 0.16 TCGA-D6-6516-01 19 57176536 57176536 C T ZNF835 Missense_Mutation p.G11S 0.42 tolerated(0.68) benign(0.002) TCGA-D6-6516-01 19 57325361 57325361 G T PEG3 Missense_Mutation p.D1483E 0.28 tolerated(0.12) possibly_damaging(0.553) TCGA-D6-6516-01 19 57325830 57325830 C T PEG3 Missense_Mutation p.G1327E 0.19 tolerated(0.7) benign(0.146) TCGA-D6-6516-01 19 57326902 57326902 C T PEG3 Missense_Mutation p.E970K 0.26 tolerated(0.19) benign(0.192) TCGA-D6-6516-01 19 57327572 57327572 G A PEG3 Silent p.D746D 0.31 TCGA-D6-6516-01 19 57327611 57327611 C G PEG3 Missense_Mutation p.K733N 0.40 deleterious(0.03) probably_damaging(0.993) TCGA-D6-6516-01 19 57641804 57641804 C T USP29 Silent p.S587S 0.10 TCGA-D6-6516-01 19 57910606 57910606 C T ZNF548 Silent p.F329F 0.13 TCGA-D6-6516-01 19 57931851 57931851 G A ZNF17 Missense_Mutation p.G331R 0.31 deleterious(0.02) benign(0.071) TCGA-D6-6516-01 19 58117311 58117311 G A ZNF530 Missense_Mutation p.D140N 0.17 tolerated(0.16) benign(0.007) TCGA-D6-6516-01 19 58196721 58196721 T G ZNF551 Missense_Mutation p.M58R 0.13 deleterious(0) benign(0.125) TCGA-D6-6516-01 19 58437850 58437850 C T ZNF418 Missense_Mutation p.E567K 0.26 tolerated(0.38) probably_damaging(0.973) TCGA-D6-6516-01 19 58472858 58472858 G A C19orf18 Missense_Mutation p.P145S 0.17 tolerated(0.07) probably_damaging(0.932) TCGA-D6-6516-01 19 58499607 58499607 A C ZNF606 Missense_Mutation p.V123G 0.13 deleterious(0.01) benign(0.074) TCGA-D6-6516-01 19 58578350 58578350 G A ZNF135 Silent p.G190G 0.43 TCGA-D6-6516-01 19 58578606 58578606 C T ZNF135 Missense_Mutation p.R276W 0.12 tolerated(0.17) probably_damaging(0.931) TCGA-D6-6516-01 19 58962976 58962976 C T ZNF324B 5'UTR 0.10 TCGA-D6-6516-01 19 59010014 59010014 C T SLC27A5 Silent p.R647R 0.28 TCGA-D6-6516-01 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.07 TCGA-D6-6516-01 19 6754132 6754132 G A SH2D3A Missense_Mutation p.H439Y 0.40 tolerated(0.61) benign(0.2) TCGA-D6-6516-01 19 6977270 6977270 C T EMR4P RNA 0.58 TCGA-D6-6516-01 19 7830111 7830111 C T CLEC4M Silent p.S57S 0.29 TCGA-D6-6516-01 19 8550506 8550506 C T HNRNPM Silent p.V398V 0.19 TCGA-D6-6516-01 19 8550507 8550507 C T HNRNPM Missense_Mutation p.P399S 0.19 tolerated(0.51) benign(0.006) TCGA-D6-6516-01 19 9068060 9068060 C T MUC16 Nonsense_Mutation p.W6462* 0.24 TCGA-D6-6516-01 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.27 unknown(0) TCGA-D6-6516-01 19 9090942 9090942 G T MUC16 Silent p.L291L 0.40 TCGA-D6-6516-01 19 9453078 9453078 G A ZNF559 Silent p.R317R 0.10 TCGA-D6-6516-01 19 9489658 9489658 A G ZNF177 Silent p.E18E 0.16 TCGA-D6-6516-01 19 9801297 9801297 T C ZNF812 Silent p.Q294Q 0.19 TCGA-D6-6516-01 1 100212952 100212952 G A FRRS1 Silent p.L77L 0.27 TCGA-D6-6516-01 1 100715333 100715333 C T DBT Missense_Mutation p.G15E 0.16 tolerated_low_confidence(0.19) benign(0.134) TCGA-D6-6516-01 1 10166447 10166447 T G UBE4B Silent p.T334T 0.23 TCGA-D6-6516-01 1 103412481 103412481 G A COL11A1 Missense_Mutation p.T1067I 0.14 unknown(0) TCGA-D6-6516-01 1 103427456 103427456 C T COL11A1 Missense_Mutation p.G1045E 0.11 unknown(0) TCGA-D6-6516-01 1 103548459 103548459 C T COL11A1 Missense_Mutation p.G59E 0.28 probably_damaging(1) TCGA-D6-6516-01 1 109793177 109793177 G A CELSR2 Missense_Mutation p.G159E 0.16 tolerated(0.35) benign(0) TCGA-D6-6516-01 1 110051361 110051361 G A AMIGO1 Silent p.S58S 0.21 TCGA-D6-6516-01 1 110155569 110155569 G A GNAT2 5'UTR 0.23 TCGA-D6-6516-01 1 110754452 110754452 C T KCNC4 Missense_Mutation p.R111C 0.30 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 1 11105536 11105536 T C MASP2 Missense_Mutation p.N158S 0.34 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 1 111147020 111147020 C T KCNA2 Missense_Mutation p.D129N 0.23 deleterious(0.05) probably_damaging(0.98) TCGA-D6-6516-01 1 111216580 111216580 G A KCNA3 Silent p.S284S 0.16 TCGA-D6-6516-01 1 111825952 111825952 C T CHIAP2 RNA 0.30 TCGA-D6-6516-01 1 113239079 113239079 C T MOV10 Missense_Mutation p.P635L 0.21 deleterious(0.02) possibly_damaging(0.814) TCGA-D6-6516-01 1 115280598 115280598 G C CSDE1 Missense_Mutation p.R145G 0.16 deleterious(0) probably_damaging(0.977) TCGA-D6-6516-01 1 115456614 115456614 G A SYCP1 Missense_Mutation p.E556K 0.23 deleterious(0.04) benign(0.441) TCGA-D6-6516-01 1 115537648 115537648 G A SYCP1 3'UTR 0.27 TCGA-D6-6516-01 1 117122029 117122029 G C IGSF3 Missense_Mutation p.R1127G 0.20 tolerated(0.33) benign(0.043) TCGA-D6-6516-01 1 117699529 117699529 T A VTCN1 Missense_Mutation p.T38S 0.28 tolerated(1) benign(0.009) TCGA-D6-6516-01 1 11887266 11887266 C T CLCN6 Silent p.L276L 0.18 TCGA-D6-6516-01 1 119427862 119427862 G A TBX15 Silent p.P328P 0.26 TCGA-D6-6516-01 1 119427863 119427863 G A TBX15 Missense_Mutation p.P328L 0.26 deleterious(0.01) benign(0.022) TCGA-D6-6516-01 1 119466122 119466122 C T TBX15 Silent p.G160G 0.23 TCGA-D6-6516-01 1 119575733 119575733 G A WARS2 Missense_Mutation p.A295V 0.23 tolerated(0.41) benign(0.017) TCGA-D6-6516-01 1 12907779 12907779 C T HNRNPCL1 Missense_Mutation p.G122R 0.15 tolerated(1) benign(0.001) TCGA-D6-6516-01 1 12955430 12955430 C T PRAMEF10 Silent p.R83R 0.28 TCGA-D6-6516-01 1 1322774 1322774 G A CCNL2 Missense_Mutation p.S467F 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D6-6516-01 1 1322852 1322852 G A CCNL2 Missense_Mutation p.S441F 0.24 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D6-6516-01 1 143767641 143767641 G A PPIAL4G Missense_Mutation p.P70S 0.13 deleterious_low_confidence(0) benign(0) TCGA-D6-6516-01 1 145075855 145075855 C T PDE4DIP Missense_Mutation p.G3D 0.08 tolerated_low_confidence(0.38) probably_damaging(0.969) TCGA-D6-6516-01 1 145311858 145311858 T G NBPF10 Intron 0.21 TCGA-D6-6516-01 1 145311859 145311859 C T NBPF10 Intron 0.20 TCGA-D6-6516-01 1 147131114 147131114 G A ACP6 Missense_Mutation p.R174C 0.17 deleterious(0) probably_damaging(0.99) TCGA-D6-6516-01 1 150300844 150300844 C T PRPF3 Silent p.P114P 0.16 TCGA-D6-6516-01 1 150527914 150527914 C T ADAMTSL4 Missense_Mutation p.S415F 0.53 deleterious(0.04) benign(0.396) TCGA-D6-6516-01 1 151131544 151131544 G A TNFAIP8L2 Missense_Mutation p.R124Q 0.23 tolerated(0.16) benign(0.022) TCGA-D6-6516-01 1 151131545 151131545 G A TNFAIP8L2 Silent p.R124R 0.23 TCGA-D6-6516-01 1 151316355 151316355 C T RFX5 Missense_Mutation p.E187K 0.19 deleterious(0.02) probably_damaging(0.952) TCGA-D6-6516-01 1 151785525 151785525 C T RORC Missense_Mutation p.E395K 0.14 deleterious(0) benign(0.381) TCGA-D6-6516-01 1 152058789 152058789 G A TCHHL1 Missense_Mutation p.P457S 0.37 tolerated(0.24) benign(0.259) TCGA-D6-6516-01 1 152059445 152059445 G A TCHHL1 Missense_Mutation p.P238L 0.19 tolerated(0.24) benign(0.014) TCGA-D6-6516-01 1 152187529 152187529 C T HRNR Silent p.S2192S 0.06 TCGA-D6-6516-01 1 152191169 152191169 G A HRNR Missense_Mutation p.S979L 0.20 unknown(0) TCGA-D6-6516-01 1 152278924 152278924 C T FLG Missense_Mutation p.G2813E 0.10 benign(0.181) TCGA-D6-6516-01 1 152326846 152326846 G A FLG2 Missense_Mutation p.S1139F 0.17 unknown(0) TCGA-D6-6516-01 1 152785323 152785323 C T LCE1B 3'UTR 0.52 TCGA-D6-6516-01 1 153177418 153177418 C T LELP1 Missense_Mutation p.P79S 0.09 deleterious_low_confidence(0) unknown(0) TCGA-D6-6516-01 1 153604235 153604235 G A S100A1 Missense_Mutation p.G68E 0.17 deleterious(0.02) benign(0.066) TCGA-D6-6516-01 1 154401817 154401817 G A IL6R Missense_Mutation p.M77I 0.26 tolerated(0.11) benign(0.001) TCGA-D6-6516-01 1 154962042 154962042 C T FLAD1 Missense_Mutation p.S375F 0.15 deleterious(0.05) benign(0.308) TCGA-D6-6516-01 1 155236562 155236562 G A CLK2 Nonsense_Mutation p.Q265* 0.42 TCGA-D6-6516-01 1 155236563 155236563 G A CLK2 Silent p.H264H 0.42 TCGA-D6-6516-01 1 155254458 155254458 C T HCN3 Silent p.I333I 0.23 TCGA-D6-6516-01 1 15541602 15541604 GCC A TMEM51 Frame_Shift_Del p.A7Kfs*81 0.36 TCGA-D6-6516-01 1 155727075 155727075 G A GON4L Missense_Mutation p.H1765Y 0.13 deleterious(0.05) benign(0.291) TCGA-D6-6516-01 1 155727076 155727076 G A GON4L Silent p.D1764D 0.13 TCGA-D6-6516-01 1 156145017 156145017 C T SEMA4A Silent p.L525L 0.21 TCGA-D6-6516-01 1 156236039 156236039 C T SMG5 Missense_Mutation p.R463H 0.10 tolerated(0.14) benign(0.038) TCGA-D6-6516-01 1 156246880 156246880 G A SMG5 Silent p.L150L 0.24 TCGA-D6-6516-01 1 156348150 156348150 C T RHBG Silent p.R211R 0.10 TCGA-D6-6516-01 1 156536225 156536225 A G IQGAP3 Missense_Mutation p.V80A 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6516-01 1 156622557 156622557 G A BCAN Silent p.R605R 0.12 TCGA-D6-6516-01 1 156622558 156622558 G A BCAN Missense_Mutation p.E606K 0.12 tolerated(0.19) benign(0.146) TCGA-D6-6516-01 1 156880483 156880483 G A PEAR1 Silent p.S633S 0.10 TCGA-D6-6516-01 1 156909465 156909465 G A ARHGEF11 Missense_Mutation p.S1324F 0.40 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-D6-6516-01 1 157559185 157559185 C T FCRL4 Missense_Mutation p.R39K 0.18 tolerated(1) benign(0.002) TCGA-D6-6516-01 1 157667267 157667267 G T FCRL3 Intron 0.15 TCGA-D6-6516-01 1 15812401 15812401 G A CELA2B Missense_Mutation p.G167R 0.23 tolerated(0.06) benign(0.227) TCGA-D6-6516-01 1 158227513 158227513 C T CD1A 3'UTR 0.28 TCGA-D6-6516-01 1 158436049 158436049 G A OR10K1 Missense_Mutation p.G233E 0.16 deleterious(0.01) benign(0.309) TCGA-D6-6516-01 1 158724701 158724701 G A OR6K6 Silent p.G32G 0.21 TCGA-D6-6516-01 1 159176033 159176033 C T DARC Silent p.S270S 0.17 TCGA-D6-6516-01 1 159176249 159176249 C T DARC 3'UTR 0.21 TCGA-D6-6516-01 1 159176250 159176250 C T DARC 3'UTR 0.22 TCGA-D6-6516-01 1 160340725 160340725 C T NHLH1 Silent p.R68R 0.33 TCGA-D6-6516-01 1 160340726 160340726 C T NHLH1 Missense_Mutation p.R69W 0.33 deleterious(0) possibly_damaging(0.689) TCGA-D6-6516-01 1 160849204 160849204 C T ITLN1 Missense_Mutation p.R229Q 0.18 tolerated(0.58) benign(0.005) TCGA-D6-6516-01 1 16093894 16093894 C T FBLIM1 Silent p.L92L 0.15 TCGA-D6-6516-01 1 161018122 161018122 C T ARHGAP30 Missense_Mutation p.E897K 0.18 deleterious_low_confidence(0.02) benign(0.285) TCGA-D6-6516-01 1 161168017 161168017 C T ADAMTS4 Missense_Mutation p.G134E 0.20 deleterious(0.03) probably_damaging(0.926) TCGA-D6-6516-01 1 162368801 162368801 C T SH2D1B Missense_Mutation p.G92E 0.12 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 1 166039968 166039968 C T FAM78B Missense_Mutation p.G99E 0.17 deleterious(0.02) probably_damaging(0.944) TCGA-D6-6516-01 1 167023508 167023508 G A GPA33 3'UTR 0.50 TCGA-D6-6516-01 1 169390941 169390941 T A CCDC181 Missense_Mutation p.N243I 0.21 tolerated(0.08) possibly_damaging(0.487) TCGA-D6-6516-01 1 169511036 169511036 G A F5 Missense_Mutation p.P1098S 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.772) TCGA-D6-6516-01 1 169578891 169578891 C T SELP Missense_Mutation p.G395E 0.10 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 1 171083464 171083464 T C FMO3 Missense_Mutation p.V382A 0.45 tolerated(0.9) benign(0.001) TCGA-D6-6516-01 1 171173050 171173050 C T FMO2 Missense_Mutation p.S225F 0.20 tolerated(0.72) possibly_damaging(0.863) TCGA-D6-6516-01 1 17312618 17312618 G A ATP13A2 3'UTR 0.35 TCGA-D6-6516-01 1 17312619 17312619 G A ATP13A2 3'UTR 0.35 TCGA-D6-6516-01 1 175306677 175306677 C T TNR Missense_Mutation p.G1174E 0.36 tolerated(0.13) benign(0.082) TCGA-D6-6516-01 1 176863845 176863845 C T ASTN1 Missense_Mutation p.M931I 0.13 tolerated(0.88) benign(0.053) TCGA-D6-6516-01 1 176927501 176927501 C T ASTN1 Missense_Mutation p.M572I 0.40 deleterious(0.05) benign(0.173) TCGA-D6-6516-01 1 177250713 177250713 G A BRINP2 3'UTR 0.09 TCGA-D6-6516-01 1 177909754 177909754 C T SEC16B Silent p.R706R 0.25 TCGA-D6-6516-01 1 17945831 17945831 C T ARHGEF10L Intron 0.33 TCGA-D6-6516-01 1 18149591 18149591 C T ACTL8 Missense_Mutation p.P30S 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-D6-6516-01 1 181741312 181741312 G A CACNA1E Missense_Mutation p.G1695D 0.36 deleterious(0) probably_damaging(0.982) TCGA-D6-6516-01 1 182856371 182856371 C A DHX9 Silent p.S1205S 0.17 TCGA-D6-6516-01 1 186092317 186092317 G A HMCN1 Missense_Mutation p.G4155E 0.21 probably_damaging(1) TCGA-D6-6516-01 1 18809042 18809042 C T KLHDC7A Missense_Mutation p.R523C 0.25 tolerated(0.18) benign(0.003) TCGA-D6-6516-01 1 193065760 193065760 G A GLRX2 Nonsense_Mutation p.Q165* 0.59 TCGA-D6-6516-01 1 19447897 19447897 G A UBR4 Silent p.F3309F 0.14 TCGA-D6-6516-01 1 19630782 19630782 G A AKR7A2 Silent p.V339V 0.37 TCGA-D6-6516-01 1 19630871 19630871 C T AKR7A2 Missense_Mutation p.G310R 0.31 deleterious(0.03) possibly_damaging(0.73) TCGA-D6-6516-01 1 196438186 196438186 C T KCNT2 Missense_Mutation p.E133K 0.22 deleterious(0.01) probably_damaging(0.965) TCGA-D6-6516-01 1 196670527 196670527 C T CFH Intron 0.26 TCGA-D6-6516-01 1 196758808 196758808 G A CFHR3 Intron 0.17 TCGA-D6-6516-01 1 196796106 196796106 G A CFHR1 Nonsense_Mutation p.W134* 0.28 TCGA-D6-6516-01 1 197160945 197160945 G C ZBTB41 Missense_Mutation p.S402C 0.12 deleterious(0.01) probably_damaging(0.94) TCGA-D6-6516-01 1 197297819 197297819 C T CRB1 Missense_Mutation p.S113F 0.35 tolerated(0.67) benign(0.002) TCGA-D6-6516-01 1 197404489 197404489 C G CRB1 Missense_Mutation p.P1166A 0.30 tolerated(0.35) benign(0.151) TCGA-D6-6516-01 1 197404490 197404490 C T CRB1 Missense_Mutation p.P1166L 0.29 tolerated(0.24) benign(0.057) TCGA-D6-6516-01 1 198671529 198671529 G A PTPRC Silent p.E151E 0.17 TCGA-D6-6516-01 1 201197604 201197604 C T IGFN1 3'UTR 0.25 TCGA-D6-6516-01 1 201821287 201821287 C T IPO9 Silent p.L190L 0.17 TCGA-D6-6516-01 1 201821288 201821288 C T IPO9 Missense_Mutation p.P191S 0.18 tolerated(0.13) possibly_damaging(0.685) TCGA-D6-6516-01 1 202245593 202245593 C T LGR6 Silent p.N196N 0.21 TCGA-D6-6516-01 1 202245594 202245594 C T LGR6 Missense_Mutation p.R197C 0.19 deleterious(0) possibly_damaging(0.893) TCGA-D6-6516-01 1 203024700 203024700 C T PPFIA4 Missense_Mutation p.S151F 0.09 deleterious(0) probably_damaging(0.982) TCGA-D6-6516-01 1 203024701 203024701 C T PPFIA4 Silent p.S151S 0.08 TCGA-D6-6516-01 1 203149598 203149598 C T CHI3L1 Silent p.E298E 0.22 TCGA-D6-6516-01 1 204124207 204124207 G A REN Silent p.I386I 0.18 TCGA-D6-6516-01 1 20417131 20417131 C T PLA2G5 Silent p.N121N 0.25 TCGA-D6-6516-01 1 20417132 20417132 C T PLA2G5 Silent p.L122L 0.25 TCGA-D6-6516-01 1 204518442 204518442 C T MDM4 Missense_Mutation p.P369S 0.37 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 1 205042324 205042324 G A CNTN2 Silent p.G991G 0.21 TCGA-D6-6516-01 1 205306655 205306655 G A KLHDC8A Missense_Mutation p.L309F 0.18 deleterious(0) probably_damaging(0.93) TCGA-D6-6516-01 1 205904874 205904874 C T SLC26A9 Silent p.E25E 0.20 TCGA-D6-6516-01 1 206224298 206224298 C T AVPR1B 5'UTR 0.17 TCGA-D6-6516-01 1 206317632 206317632 G A CTSE Missense_Mutation p.G19E 0.28 tolerated(1) benign(0.097) TCGA-D6-6516-01 1 206821332 206821332 G A DYRK3 Silent p.Q263Q 0.18 TCGA-D6-6516-01 1 207640107 207640107 G A CR2 Missense_Mutation p.G99R 0.42 deleterious(0) probably_damaging(0.99) TCGA-D6-6516-01 1 209936417 209936417 G A TRAF3IP3 Missense_Mutation p.G186R 0.09 deleterious(0) probably_damaging(0.963) TCGA-D6-6516-01 1 209936418 209936418 G A TRAF3IP3 Missense_Mutation p.G186E 0.09 deleterious(0) probably_damaging(0.948) TCGA-D6-6516-01 1 209956454 209956454 G A C1orf74 Missense_Mutation p.L176F 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-D6-6516-01 1 209956455 209956455 G A C1orf74 Silent p.I175I 0.44 TCGA-D6-6516-01 1 2103808 2103808 C T PRKCZ Silent p.I422I 0.25 TCGA-D6-6516-01 1 213414910 213414910 T G RPS6KC1 Silent p.G697G 0.19 TCGA-D6-6516-01 1 214171352 214171352 C T PROX1 Missense_Mutation p.P492S 0.18 tolerated(0.55) probably_damaging(0.99) TCGA-D6-6516-01 1 214625317 214625317 T G PTPN14 Missense_Mutation p.T59P 0.24 tolerated(0.31) probably_damaging(0.986) TCGA-D6-6516-01 1 215808040 215808040 C T USH2A Missense_Mutation p.V5020I 0.11 benign(0.009) TCGA-D6-6516-01 1 216380737 216380737 T C USH2A Missense_Mutation p.Q1065R 0.16 benign(0.254) TCGA-D6-6516-01 1 216680458 216680458 C T ESRRG Silent p.Q412Q 0.19 TCGA-D6-6516-01 1 220791840 220791840 C T MARK1 Silent p.L247L 0.17 TCGA-D6-6516-01 1 221879775 221879775 T C DUSP10 Missense_Mutation p.N282S 0.29 tolerated(0.34) benign(0.002) TCGA-D6-6516-01 1 222717466 222717466 G A HHIPL2 Silent p.L129L 0.18 TCGA-D6-6516-01 1 2234517 2234517 G A SKI Missense_Mutation p.R357Q 0.27 tolerated(0.8) benign(0.019) TCGA-D6-6516-01 1 2234518 2234518 G A SKI Silent p.R357R 0.27 TCGA-D6-6516-01 1 226924822 226924822 A C ITPKB Missense_Mutation p.V113G 0.38 tolerated_low_confidence(0.42) benign(0.006) TCGA-D6-6516-01 1 228246955 228246955 C T WNT3A Missense_Mutation p.P283L 0.32 tolerated(0.28) possibly_damaging(0.793) TCGA-D6-6516-01 1 228362983 228362983 C T IBA57 Silent p.F280F 0.14 TCGA-D6-6516-01 1 228447459 228447459 T A OBSCN Missense_Mutation p.F1707I 0.16 benign(0.055) TCGA-D6-6516-01 1 230979405 230979405 G A C1orf198 Nonsense_Mutation p.Q208* 0.19 TCGA-D6-6516-01 1 232649796 232649796 G T SIPA1L2 Missense_Mutation p.N430K 0.18 deleterious(0.02) benign(0.158) TCGA-D6-6516-01 1 232649797 232649797 T G SIPA1L2 Missense_Mutation p.N430T 0.19 tolerated(0.12) benign(0.119) TCGA-D6-6516-01 1 234584226 234584226 C T TARBP1 Missense_Mutation p.S654N 0.19 tolerated(0.12) possibly_damaging(0.529) TCGA-D6-6516-01 1 235643460 235643460 G A B3GALNT2 Silent p.A187A 0.19 TCGA-D6-6516-01 1 237540664 237540664 C T RYR2 Nonsense_Mutation p.R169* 0.10 TCGA-D6-6516-01 1 237754053 237754053 G A RYR2 Silent p.P1307P 0.23 TCGA-D6-6516-01 1 237777850 237777850 G A RYR2 Missense_Mutation p.D1808N 0.21 probably_damaging(1) TCGA-D6-6516-01 1 237804216 237804216 G A RYR2 Missense_Mutation p.D2379N 0.19 possibly_damaging(0.776) TCGA-D6-6516-01 1 237837398 237837398 G A RYR2 Missense_Mutation p.G2865R 0.16 probably_damaging(0.998) TCGA-D6-6516-01 1 237947405 237947405 C G RYR2 Silent p.P4131P 0.16 TCGA-D6-6516-01 1 24172088 24172088 G A FUCA1 3'UTR 0.35 TCGA-D6-6516-01 1 243289829 243289829 T C CEP170 Silent p.E1559E 0.24 TCGA-D6-6516-01 1 24687347 24687347 C T STPG1 Missense_Mutation p.G308S 0.19 deleterious(0) probably_damaging(0.989) TCGA-D6-6516-01 1 247163359 247163359 C T ZNF695 Silent p.R7R 0.13 TCGA-D6-6516-01 1 247655080 247655080 C T OR2W5 RNA 0.25 TCGA-D6-6516-01 1 247752021 247752021 G A OR2G2 Silent p.V120V 0.18 TCGA-D6-6516-01 1 247978769 247978769 T C OR14A16 Missense_Mutation p.N88S 0.14 tolerated(0.35) benign(0.022) TCGA-D6-6516-01 1 248224682 248224682 G A OR2L3 Silent p.R233R 0.41 TCGA-D6-6516-01 1 248262753 248262753 C T OR2L13 Missense_Mutation p.L26F 0.42 tolerated(0.23) benign(0.093) TCGA-D6-6516-01 1 248308568 248308568 T G OR2M5 Missense_Mutation p.M40R 0.39 tolerated(0.13) benign(0.003) TCGA-D6-6516-01 1 248458859 248458859 G A OR2T12 Missense_Mutation p.P8S 0.19 tolerated(1) benign(0) TCGA-D6-6516-01 1 248685539 248685539 G A OR2G6 Missense_Mutation p.E198K 0.41 tolerated(0.27) possibly_damaging(0.672) TCGA-D6-6516-01 1 248814027 248814027 G A OR2T27 Silent p.S53S 0.10 TCGA-D6-6516-01 1 26012975 26012975 G A MAN1C1 Silent p.G195G 0.25 TCGA-D6-6516-01 1 26366380 26366380 G A SLC30A2 Silent p.F287F 0.25 TCGA-D6-6516-01 1 26800471 26800471 G A HMGN2 Intron 0.38 TCGA-D6-6516-01 1 26877918 26877918 G A RPS6KA1 Missense_Mutation p.R122K 0.27 deleterious(0) probably_damaging(0.952) TCGA-D6-6516-01 1 27057646 27057646 C T ARID1A Missense_Mutation p.P452S 0.21 benign(0) TCGA-D6-6516-01 1 27057647 27057647 C T ARID1A Missense_Mutation p.P452L 0.21 benign(0.001) TCGA-D6-6516-01 1 27176873 27176873 C T ZDHHC18 Missense_Mutation p.S243F 0.19 deleterious(0) probably_damaging(0.968) TCGA-D6-6516-01 1 27190366 27190366 G A SFN Silent p.Q221Q 0.29 TCGA-D6-6516-01 1 27190376 27190376 G A SFN Missense_Mutation p.D225N 0.24 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-D6-6516-01 1 27240329 27240329 G A NR0B2 Missense_Mutation p.P35S 0.13 tolerated(0.33) benign(0.001) TCGA-D6-6516-01 1 32678090 32678090 G A DCDC2B Splice_Site p.X176_splice 0.28 TCGA-D6-6516-01 1 32687997 32687997 T A EIF3I 5'UTR 0.20 TCGA-D6-6516-01 1 32742008 32742008 G A LCK Nonsense_Mutation p.W234* 0.16 TCGA-D6-6516-01 1 3313153 3313153 G A PRDM16 Silent p.L224L 0.40 TCGA-D6-6516-01 1 3313154 3313154 G A PRDM16 Missense_Mutation p.D225N 0.44 tolerated(0.16) benign(0.199) TCGA-D6-6516-01 1 34554764 34554764 G A CSMD2 Missense_Mutation p.P33L 0.23 tolerated(0.22) possibly_damaging(0.516) TCGA-D6-6516-01 1 35476584 35476584 C G ZMYM6 Missense_Mutation p.Q372H 0.26 tolerated(0.08) benign(0.004) TCGA-D6-6516-01 1 36564591 36564591 G A COL8A2 Missense_Mutation p.P231S 0.47 tolerated(0.1) unknown(0) TCGA-D6-6516-01 1 40929143 40929143 T A ZFP69B Missense_Mutation p.I496N 0.24 tolerated(0.05) probably_damaging(0.966) TCGA-D6-6516-01 1 41481682 41481682 C T SLFNL1 3'UTR 0.34 TCGA-D6-6516-01 1 41483465 41483465 G A SLFNL1 Silent p.L267L 0.17 TCGA-D6-6516-01 1 41486345 41486345 C T SLFNL1 5'UTR 0.27 TCGA-D6-6516-01 1 42880386 42880386 G A RIMKLA Missense_Mutation p.R306K 0.29 tolerated(0.05) benign(0.15) TCGA-D6-6516-01 1 43675661 43675661 C T WDR65 Missense_Mutation p.S668F 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-D6-6516-01 1 43779128 43779128 G A TIE1 Intron 0.32 TCGA-D6-6516-01 1 43853231 43853231 G A MED8 Silent p.F71F 0.27 TCGA-D6-6516-01 1 43897985 43897985 G A SZT2 Missense_Mutation p.D1716N 0.22 tolerated(0.18) probably_damaging(0.915) TCGA-D6-6516-01 1 44437418 44437418 C T DPH2 Missense_Mutation p.R282C 0.23 deleterious(0.01) possibly_damaging(0.773) TCGA-D6-6516-01 1 45292235 45292235 G C PTCH2 Silent p.A967A 0.28 TCGA-D6-6516-01 1 45965908 45965908 C T MMACHC 5'UTR 0.37 TCGA-D6-6516-01 1 47351249 47351249 C T CYP4Z2P RNA 0.10 TCGA-D6-6516-01 1 47614402 47614402 C T CYP4A22 Missense_Mutation p.S498F 0.22 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 1 47685342 47685342 C T TAL1 3'UTR 0.30 TCGA-D6-6516-01 1 47685629 47685629 C T TAL1 Silent p.R253R 0.29 TCGA-D6-6516-01 1 52841197 52841197 G A ORC1 Silent p.S736S 0.24 TCGA-D6-6516-01 1 53074034 53074034 G A GPX7 Silent p.E167E 0.17 TCGA-D6-6516-01 1 53074035 53074035 G A GPX7 Missense_Mutation p.V168I 0.18 tolerated(1) benign(0.001) TCGA-D6-6516-01 1 55252653 55252653 C A TTC22 Missense_Mutation p.D279Y 0.40 deleterious(0) possibly_damaging(0.741) TCGA-D6-6516-01 1 62503685 62503685 C A INADL Silent p.P1332P 0.26 TCGA-D6-6516-01 1 65255158 65255158 C T RAVER2 Missense_Mutation p.L356F 0.29 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 1 6536025 6536025 C T PLEKHG5 Missense_Mutation p.E118K 0.23 tolerated(0.05) probably_damaging(0.944) TCGA-D6-6516-01 1 66031281 66031281 A T LEPR Missense_Mutation p.L11F 0.18 tolerated(0.05) benign(0.027) TCGA-D6-6516-01 1 6640991 6640991 G A ZBTB48 Missense_Mutation p.V108I 0.17 tolerated(0.23) benign(0.255) TCGA-D6-6516-01 1 6642211 6642211 C T ZBTB48 Nonsense_Mutation p.R262* 0.23 TCGA-D6-6516-01 1 67450593 67450593 C T MIER1 3'UTR 0.27 TCGA-D6-6516-01 1 75037433 75037433 C T C1orf173 Missense_Mutation p.E1321K 0.21 tolerated(0.82) benign(0.009) TCGA-D6-6516-01 1 75038398 75038398 C T C1orf173 Missense_Mutation p.G999E 0.30 tolerated(0.14) benign(0.387) TCGA-D6-6516-01 1 75072544 75072544 C T C1orf173 Silent p.P410P 0.23 TCGA-D6-6516-01 1 77627083 77627083 G A PIGK Missense_Mutation p.P237L 0.23 tolerated(0.7) benign(0.036) TCGA-D6-6516-01 1 7902768 7902768 G A PER3 Missense_Mutation p.G1187S 0.21 tolerated(0.25) benign(0.036) TCGA-D6-6516-01 1 82408872 82408872 G A LPHN2 Missense_Mutation p.R206Q 0.41 deleterious(0.05) possibly_damaging(0.566) TCGA-D6-6516-01 1 85486956 85486956 G A MCOLN3 Missense_Mutation p.R442C 0.23 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 1 86315049 86315049 C T COL24A1 Missense_Mutation p.R1114H 0.20 tolerated(0.1) benign(0.303) TCGA-D6-6516-01 1 86939149 86939149 G A CLCA1 Missense_Mutation p.R71Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 1 89448465 89448465 G A RBMXL1 Missense_Mutation p.P349S 0.26 tolerated(0.27) benign(0.334) TCGA-D6-6516-01 1 900538 900538 C T KLHL17 Silent p.S632S 0.23 TCGA-D6-6516-01 1 92187698 92187698 G A TGFBR3 Missense_Mutation p.P297S 0.27 tolerated(1) benign(0.009) TCGA-D6-6516-01 1 92709803 92709803 G A C1orf146 Missense_Mutation p.E64K 0.26 tolerated(0.08) benign(0.02) TCGA-D6-6516-01 1 93645820 93645820 G A TMED5 5'UTR 0.17 TCGA-D6-6516-01 1 94487499 94487499 C T ABCA4 Missense_Mutation p.G1559E 0.18 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 1 99358593 99358593 A C LPPR5 3'UTR 0.10 TCGA-D6-6516-01 20 10630991 10630991 G A JAG1 Missense_Mutation p.P380S 0.42 tolerated(1) benign(0.178) TCGA-D6-6516-01 20 139628 139628 T G DEFB127 Missense_Mutation p.I88R 0.40 deleterious_low_confidence(0.03) benign(0.047) TCGA-D6-6516-01 20 16348135 16348135 C T KIF16B Missense_Mutation p.E1279K 0.19 deleterious_low_confidence(0.01) benign(0.031) TCGA-D6-6516-01 20 17475391 17475391 C T BFSP1 Silent p.G442G 0.14 TCGA-D6-6516-01 20 1961100 1961100 G A PDYN Missense_Mutation p.R212W 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 20 19665797 19665797 C T SLC24A3 Silent p.A372A 0.10 TCGA-D6-6516-01 20 20208964 20208964 C T C20orf26 Silent p.I668I 0.45 TCGA-D6-6516-01 20 2321261 2321261 A T TGM3 3'UTR 0.21 TCGA-D6-6516-01 20 24954320 24954320 C A APMAP Nonsense_Mutation p.E128* 0.07 TCGA-D6-6516-01 20 25206246 25206246 C T ENTPD6 3'UTR 0.34 TCGA-D6-6516-01 20 25206247 25206247 C T ENTPD6 3'UTR 0.34 TCGA-D6-6516-01 20 25481637 25481637 C T NINL Missense_Mutation p.E291K 0.33 deleterious(0) possibly_damaging(0.465) TCGA-D6-6516-01 20 25498400 25498400 G A NINL Missense_Mutation p.S89F 0.29 deleterious(0.02) benign(0.254) TCGA-D6-6516-01 20 25656044 25656044 G A ZNF337 Missense_Mutation p.P627L 0.21 tolerated(0.05) unknown(0) TCGA-D6-6516-01 20 2779447 2779447 G A CPXM1 Missense_Mutation p.P89S 0.29 tolerated_low_confidence(0.24) benign(0.004) TCGA-D6-6516-01 20 2779448 2779448 G A CPXM1 Silent p.T88T 0.28 TCGA-D6-6516-01 20 29847382 29847382 G A DEFB115 Missense_Mutation p.D72N 0.10 tolerated(0.33) benign(0.026) TCGA-D6-6516-01 20 29960871 29960871 G A DEFB118 Silent p.T90T 0.11 TCGA-D6-6516-01 20 30436629 30436629 C T FOXS1 5'Flank 0.19 TCGA-D6-6516-01 20 30486286 30486286 G A TTLL9 Missense_Mutation p.A42T 0.10 tolerated(0.55) benign(0.001) TCGA-D6-6516-01 20 30522680 30522680 G A TTLL9 Silent p.Q331Q 0.26 TCGA-D6-6516-01 20 30730848 30730848 C T TM9SF4 Nonsense_Mutation p.Q198* 0.48 TCGA-D6-6516-01 20 30784317 30784317 G A PLAGL2 Missense_Mutation p.P477S 0.30 tolerated(1) benign(0.004) TCGA-D6-6516-01 20 30785254 30785254 G A PLAGL2 Silent p.T164T 0.13 TCGA-D6-6516-01 20 3214206 3214206 G A SLC4A11 Missense_Mutation p.S271F 0.13 deleterious(0.03) probably_damaging(0.953) TCGA-D6-6516-01 20 33568428 33568428 C T MYH7B Silent p.L172L 0.10 TCGA-D6-6516-01 20 33875587 33875587 C T FAM83C Missense_Mutation p.R332K 0.41 tolerated(0.91) benign(0.031) TCGA-D6-6516-01 20 34451277 34451277 G A PHF20 Missense_Mutation p.E255K 0.14 tolerated(0.22) probably_damaging(0.983) TCGA-D6-6516-01 20 34487531 34487531 G A PHF20 Missense_Mutation p.E508K 0.30 tolerated(0.42) benign(0.04) TCGA-D6-6516-01 20 35632247 35632247 G A RBL1 Missense_Mutation p.P965L 0.21 deleterious(0) probably_damaging(0.982) TCGA-D6-6516-01 20 35632248 35632248 G A RBL1 Missense_Mutation p.P965S 0.21 deleterious(0) probably_damaging(0.973) TCGA-D6-6516-01 20 35776293 35776293 C T MROH8 Missense_Mutation p.R392K 0.24 tolerated(0.17) benign(0.027) TCGA-D6-6516-01 20 36012652 36012652 C T SRC Silent p.F32F 0.31 TCGA-D6-6516-01 20 3655679 3655679 G A ADAM33 Missense_Mutation p.H110Y 0.14 tolerated(0.48) benign(0.139) TCGA-D6-6516-01 20 36641079 36641079 G A TTI1 Silent p.S380S 0.14 TCGA-D6-6516-01 20 36641942 36641942 G A TTI1 Missense_Mutation p.L93F 0.28 tolerated(0.18) benign(0.045) TCGA-D6-6516-01 20 3672822 3672822 G A SIGLEC1 Missense_Mutation p.S1353F 0.22 tolerated(0.09) benign(0.443) TCGA-D6-6516-01 20 3677377 3677377 G A SIGLEC1 Missense_Mutation p.H847Y 0.24 tolerated(1) benign(0.393) TCGA-D6-6516-01 20 3679949 3679949 G A SIGLEC1 Silent p.L562L 0.12 TCGA-D6-6516-01 20 3684712 3684712 G A SIGLEC1 Missense_Mutation p.L245F 0.20 deleterious(0.04) benign(0.25) TCGA-D6-6516-01 20 36855595 36855595 C T KIAA1755 Silent p.K671K 0.14 TCGA-D6-6516-01 20 37154598 37154598 T C RALGAPB Missense_Mutation p.F655L 0.27 tolerated(0.06) benign(0.23) TCGA-D6-6516-01 20 39793697 39793697 G A PLCG1 Missense_Mutation p.G448R 0.29 tolerated(0.39) possibly_damaging(0.794) TCGA-D6-6516-01 20 40043684 40043684 G A CHD6 Intron 0.23 TCGA-D6-6516-01 20 42089231 42089231 C T SRSF6 Missense_Mutation p.R223C 0.21 deleterious(0) unknown(0) TCGA-D6-6516-01 20 43572214 43572214 G A TOMM34 Silent p.L235L 0.23 TCGA-D6-6516-01 20 44430653 44430653 C T DNTTIP1 Missense_Mutation p.P172S 0.24 deleterious(0.02) benign(0.042) TCGA-D6-6516-01 20 44574858 44574858 T C PCIF1 Missense_Mutation p.L483P 0.11 tolerated(0.38) benign(0.003) TCGA-D6-6516-01 20 44750928 44750928 G A CD40 Missense_Mutation p.G63S 0.08 tolerated(0.67) benign(0.003) TCGA-D6-6516-01 20 45140770 45140770 G A ZNF334 5'UTR 0.38 TCGA-D6-6516-01 20 45354665 45354665 G C SLC2A10 Silent p.L330L 0.19 TCGA-D6-6516-01 20 45874948 45874948 G A ZMYND8 Silent p.S696S 0.14 TCGA-D6-6516-01 20 47587686 47587686 C T ARFGEF2 Missense_Mutation p.S407F 0.25 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 20 47587687 47587687 C T ARFGEF2 Silent p.S407S 0.24 TCGA-D6-6516-01 20 49620884 49620884 G A KCNG1 Missense_Mutation p.P412S 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 20 50407413 50407413 G A SALL4 Nonsense_Mutation p.Q537* 0.40 TCGA-D6-6516-01 20 52609099 52609099 C T BCAS1 Intron 0.11 TCGA-D6-6516-01 20 5294627 5294627 G A PROKR2 Missense_Mutation p.S130F 0.18 tolerated(0.22) benign(0.038) TCGA-D6-6516-01 20 5550825 5550825 G A GPCPD1 Missense_Mutation p.H373Y 0.10 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 20 56190040 56190040 C A ZBP1 Missense_Mutation p.R135S 0.41 tolerated(0.08) probably_damaging(0.966) TCGA-D6-6516-01 20 57015992 57015992 C T VAPB Silent p.S142S 0.12 TCGA-D6-6516-01 20 57767538 57767538 C T ZNF831 Silent p.V488V 0.44 TCGA-D6-6516-01 20 58645826 58645826 G A C20orf197 Missense_Mutation p.E82K 0.09 tolerated_low_confidence(0.15) benign(0.008) TCGA-D6-6516-01 20 5903905 5903905 C T CHGB Missense_Mutation p.A372V 0.41 tolerated(0.12) benign(0.124) TCGA-D6-6516-01 20 60987714 60987714 C T RBBP8NL Silent p.R614R 0.11 TCGA-D6-6516-01 20 61451328 61451328 G A COL9A3 Silent p.G101G 0.10 TCGA-D6-6516-01 20 61511582 61511582 G A DIDO1 Missense_Mutation p.P1909L 0.17 probably_damaging(0.999) TCGA-D6-6516-01 20 61511583 61511583 G A DIDO1 Missense_Mutation p.P1909S 0.14 probably_damaging(0.999) TCGA-D6-6516-01 20 61950421 61950421 C T COL20A1 Missense_Mutation p.P892L 0.21 tolerated(0.55) benign(0.016) TCGA-D6-6516-01 20 61978201 61978201 C T CHRNA4 Nonsense_Mutation p.W591* 0.43 TCGA-D6-6516-01 20 61981710 61981710 G A CHRNA4 Silent p.I351I 0.48 TCGA-D6-6516-01 20 62196773 62196773 G A HELZ2 Silent p.F1134F 0.22 TCGA-D6-6516-01 20 62577155 62577155 T A UCKL1 Intron 0.30 TCGA-D6-6516-01 20 62630979 62630979 T A PRPF6 Missense_Mutation p.L297H 0.16 deleterious(0) probably_damaging(0.945) TCGA-D6-6516-01 21 10862636 10862636 G A IGHV1OR21-1 Nonsense_Mutation p.W5* 0.10 TCGA-D6-6516-01 21 10910350 10910350 C T TPTE Missense_Mutation p.G469D 0.07 deleterious(0.03) possibly_damaging(0.449) TCGA-D6-6516-01 21 11098821 11098821 C T BAGE2 RNA 0.12 TCGA-D6-6516-01 21 15858399 15858399 G A SAMSN1 Missense_Mutation p.S387F 0.17 deleterious(0) benign(0.047) TCGA-D6-6516-01 21 22841080 22841080 G A NCAM2 Silent p.L624L 0.24 TCGA-D6-6516-01 21 30927416 30927416 C T GRIK1 Missense_Mutation p.G855E 0.22 deleterious(0.03) benign(0.368) TCGA-D6-6516-01 21 30963489 30963489 C A GRIK1 Missense_Mutation p.K436N 0.24 tolerated(0.29) benign(0.01) TCGA-D6-6516-01 21 31768437 31768437 C T KRTAP13-1 Silent p.S11S 0.25 TCGA-D6-6516-01 21 31869219 31869219 C T KRTAP19-4 Silent p.T70T 0.25 TCGA-D6-6516-01 21 31933443 31933443 C T KRTAP19-7 Missense_Mutation p.G56R 0.20 tolerated_low_confidence(0.05) unknown(0) TCGA-D6-6516-01 21 31988934 31988934 G T KRTAP20-1 Missense_Mutation p.G54V 0.29 unknown(0) TCGA-D6-6516-01 21 33067280 33067280 G A SCAF4 Missense_Mutation p.P361L 0.28 probably_damaging(0.982) TCGA-D6-6516-01 21 33954558 33954558 C T AP000275.65 Silent p.R278R 0.22 TCGA-D6-6516-01 21 33975426 33975426 G A C21orf59 Intron 0.23 TCGA-D6-6516-01 21 34727665 34727665 C T IFNAR1 Missense_Mutation p.S495F 0.21 deleterious(0) possibly_damaging(0.864) TCGA-D6-6516-01 21 34861731 34861731 C A DNAJC28 Intron 0.27 TCGA-D6-6516-01 21 34921999 34921999 C T SON Silent p.S154S 0.14 TCGA-D6-6516-01 21 34957051 34957051 G A DONSON Silent p.L210L 0.33 TCGA-D6-6516-01 21 37618783 37618783 C T DOPEY2 Missense_Mutation p.A1502V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D6-6516-01 21 38461125 38461125 T C TTC3 Missense_Mutation p.L122S 0.22 deleterious(0) probably_damaging(0.99) TCGA-D6-6516-01 21 38538152 38538152 G A TTC3 Silent p.R1212R 0.27 TCGA-D6-6516-01 21 42080587 42080587 G A DSCAM Missense_Mutation p.P52S 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-D6-6516-01 21 43708321 43708321 G A ABCG1 Missense_Mutation p.D387N 0.33 tolerated(0.1) benign(0.001) TCGA-D6-6516-01 21 45213238 45213238 C T RRP1 Missense_Mutation p.R105C 0.20 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 21 45668976 45668976 G A DNMT3L Missense_Mutation p.P310S 0.20 tolerated(0.13) benign(0.019) TCGA-D6-6516-01 21 45708290 45708290 G A AIRE Missense_Mutation p.G201R 0.20 tolerated(0.23) probably_damaging(1) TCGA-D6-6516-01 21 45833900 45833900 G T TRPM2 Missense_Mutation p.C1030F 0.20 deleterious(0) probably_damaging(0.991) TCGA-D6-6516-01 21 45993969 45993969 C T KRTAP10-4 Missense_Mutation p.P112S 0.12 tolerated(0.11) unknown(0) TCGA-D6-6516-01 21 46078117 46078117 G A KRTAP12-3 Missense_Mutation p.G74E 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-D6-6516-01 21 46117935 46117935 C T KRTAP10-12 3'UTR 0.22 TCGA-D6-6516-01 21 46191283 46191283 G A UBE2G2 3'UTR 0.17 TCGA-D6-6516-01 21 46326992 46326992 C T ITGB2 Missense_Mutation p.D56N 0.32 deleterious(0) benign(0.099) TCGA-D6-6516-01 21 46596324 46596324 C T ADARB1 Silent p.P236P 0.33 TCGA-D6-6516-01 21 46951419 46951419 G A SLC19A1 Missense_Mutation p.S278L 0.36 deleterious(0) probably_damaging(0.981) TCGA-D6-6516-01 22 17588619 17588619 C T IL17RA Missense_Mutation p.P350S 0.10 tolerated(0.65) benign(0.001) TCGA-D6-6516-01 22 17976490 17976490 G A CECR2 Missense_Mutation p.E52K 0.49 deleterious(0.01) probably_damaging(0.997) TCGA-D6-6516-01 22 18300221 18300221 G A MICAL3 Missense_Mutation p.P1736S 0.22 probably_damaging(0.998) TCGA-D6-6516-01 22 19217372 19217372 G A CLTCL1 Missense_Mutation p.H591Y 0.25 tolerated(0.21) possibly_damaging(0.895) TCGA-D6-6516-01 22 19344534 19344534 C G HIRA Missense_Mutation p.V759L 0.20 tolerated(0.14) benign(0.047) TCGA-D6-6516-01 22 19444407 19444407 G A UFD1L Missense_Mutation p.P200L 0.33 deleterious(0) possibly_damaging(0.898) TCGA-D6-6516-01 22 19709395 19709395 C T SEPT5 Missense_Mutation p.R289C 0.15 deleterious(0.03) benign(0.081) TCGA-D6-6516-01 22 19789706 19789706 C A GNB1L Missense_Mutation p.G184C 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 22 19865925 19865925 C T TXNRD2 Silent p.T437T 0.15 TCGA-D6-6516-01 22 20383878 20383878 G A AC023490.1 3'Flank 0.27 TCGA-D6-6516-01 22 21385614 21385614 G A SLC7A4 Missense_Mutation p.P163L 0.24 deleterious(0.02) possibly_damaging(0.884) TCGA-D6-6516-01 22 21799757 21799757 C T HIC2 Silent p.L191L 0.23 TCGA-D6-6516-01 22 22277594 22277594 G A PPM1F Silent p.F412F 0.39 TCGA-D6-6516-01 22 22937306 22937306 G A IGLV3-32 Missense_Mutation p.G42R 0.23 deleterious(0.02) possibly_damaging(0.808) TCGA-D6-6516-01 22 23047180 23047180 A T IGLV3-22 Missense_Mutation p.Y73F 0.38 deleterious(0.02) benign(0.011) TCGA-D6-6516-01 22 23438266 23438266 G A GNAZ Missense_Mutation p.M128I 0.18 tolerated(1) benign(0.048) TCGA-D6-6516-01 22 24038805 24038805 G A RGL4 Missense_Mutation p.G364E 0.08 deleterious(0.04) possibly_damaging(0.604) TCGA-D6-6516-01 22 24056406 24056406 G A KB-1572G7.2 RNA 0.20 TCGA-D6-6516-01 22 24573698 24573698 C T CABIN1 Silent p.F2144F 0.38 TCGA-D6-6516-01 22 26776409 26776409 C T SEZ6L 3'Flank 0.23 TCGA-D6-6516-01 22 26830270 26830270 C T ASPHD2 Missense_Mutation p.T230I 0.15 tolerated(0.25) probably_damaging(0.999) TCGA-D6-6516-01 22 29083922 29083922 G A CHEK2 Missense_Mutation p.T575I 0.21 tolerated(0.08) benign(0.345) TCGA-D6-6516-01 22 29885337 29885337 G A NEFH Missense_Mutation p.E570K 0.10 deleterious(0) unknown(0) TCGA-D6-6516-01 22 29927884 29927884 G A THOC5 Silent p.A261A 0.31 TCGA-D6-6516-01 22 30660007 30660007 G A OSM Silent p.V208V 0.18 TCGA-D6-6516-01 22 30818340 30818340 C T SEC14L2 Missense_Mutation p.P386S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6516-01 22 31328351 31328351 G A MORC2 Missense_Mutation p.P884S 0.24 deleterious(0.04) possibly_damaging(0.873) TCGA-D6-6516-01 22 31522645 31522645 C T INPP5J Missense_Mutation p.L110F 0.22 tolerated(0.05) probably_damaging(0.937) TCGA-D6-6516-01 22 31979928 31979928 C T SFI1 Missense_Mutation p.P439L 0.35 tolerated(0.05) benign(0.033) TCGA-D6-6516-01 22 32302551 32302551 C T DEPDC5 3'UTR 0.10 TCGA-D6-6516-01 22 32480501 32480501 G A SLC5A1 Missense_Mutation p.G247D 0.33 tolerated(0.52) benign(0.008) TCGA-D6-6516-01 22 35478537 35478537 C T ISX Missense_Mutation p.R86C 0.42 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 22 35723363 35723363 G A TOM1 Missense_Mutation p.D250N 0.11 deleterious(0) probably_damaging(0.976) TCGA-D6-6516-01 22 36661678 36661678 C T APOL1 Missense_Mutation p.L282F 0.23 tolerated(0.38) probably_damaging(0.951) TCGA-D6-6516-01 22 37326786 37326786 C T CSF2RB Missense_Mutation p.P309L 0.32 tolerated(0.16) benign(0.021) TCGA-D6-6516-01 22 37494578 37494578 C T TMPRSS6 Missense_Mutation p.E81K 0.18 tolerated(0.09) benign(0.371) TCGA-D6-6516-01 22 37524552 37524552 C T IL2RB Missense_Mutation p.E414K 0.44 deleterious(0.01) probably_damaging(0.948) TCGA-D6-6516-01 22 37524553 37524553 C T IL2RB Silent p.G413G 0.42 TCGA-D6-6516-01 22 37769058 37769058 C T ELFN2 3'UTR 0.31 TCGA-D6-6516-01 22 37769059 37769059 C T ELFN2 3'UTR 0.31 TCGA-D6-6516-01 22 37770430 37770430 G A ELFN2 Missense_Mutation p.P382L 0.24 tolerated(0.26) benign(0.043) TCGA-D6-6516-01 22 37892485 37892485 G A CARD10 Missense_Mutation p.S677F 0.22 deleterious(0.01) possibly_damaging(0.653) TCGA-D6-6516-01 22 38121032 38121032 C T TRIOBP Silent p.I823I 0.20 TCGA-D6-6516-01 22 38121033 38121033 C T TRIOBP Missense_Mutation p.P824S 0.20 tolerated_low_confidence(0.07) benign(0.062) TCGA-D6-6516-01 22 38121451 38121451 C T TRIOBP Missense_Mutation p.S963F 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.825) TCGA-D6-6516-01 22 38121538 38121538 C T TRIOBP Missense_Mutation p.S992F 0.16 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-D6-6516-01 22 38130789 38130789 G A TRIOBP Silent p.R1482R 0.17 TCGA-D6-6516-01 22 38318042 38318042 C A MICALL1 Silent p.T211T 0.44 TCGA-D6-6516-01 22 39529949 39529949 G A CBX7 Missense_Mutation p.R235C 0.28 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 22 40057260 40057260 C T CACNA1I Missense_Mutation p.S949F 0.53 deleterious(0) benign(0.438) TCGA-D6-6516-01 22 40754970 40754970 C T ADSL Silent p.F195F 0.26 TCGA-D6-6516-01 22 40804825 40804825 C T SGSM3 Silent p.T627T 0.15 TCGA-D6-6516-01 22 41547937 41547937 C T EP300 Missense_Mutation p.S973F 0.18 benign(0.402) TCGA-D6-6516-01 22 41833301 41833301 A T TOB2 Missense_Mutation p.Y17N 0.16 deleterious(0) possibly_damaging(0.827) TCGA-D6-6516-01 22 41864692 41864692 G A PHF5A 5'UTR 0.14 TCGA-D6-6516-01 22 42046861 42046861 C T XRCC6 Silent p.S365S 0.12 TCGA-D6-6516-01 22 42486834 42486834 G A NDUFA6 5'UTR 0.41 TCGA-D6-6516-01 22 43275168 43275168 G A PACSIN2 Missense_Mutation p.S305F 0.27 deleterious(0.05) possibly_damaging(0.531) TCGA-D6-6516-01 22 44368775 44368775 C T SAMM50 Missense_Mutation p.L152F 0.24 deleterious(0.01) benign(0.239) TCGA-D6-6516-01 22 44585099 44585099 A C PARVG Missense_Mutation p.Q118P 0.34 tolerated(0.06) benign(0.078) TCGA-D6-6516-01 22 45316339 45316339 G A PHF21B Missense_Mutation p.T51M 0.27 deleterious(0.02) possibly_damaging(0.534) TCGA-D6-6516-01 22 45316340 45316340 T A PHF21B Missense_Mutation p.T51S 0.27 deleterious(0.05) benign(0.37) TCGA-D6-6516-01 22 45765889 45765889 T C SMC1B Missense_Mutation p.I789V 0.44 deleterious(0.01) benign(0.096) TCGA-D6-6516-01 22 46654239 46654239 C T PKDREJ Missense_Mutation p.D1661N 0.26 tolerated(0.55) benign(0.004) TCGA-D6-6516-01 22 50315256 50315256 C T CRELD2 Missense_Mutation p.P147S 0.24 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 22 51065382 51065382 G A ARSA Silent p.S188S 0.25 TCGA-D6-6516-01 22 51207916 51207916 G A RABL2B Silent p.F157F 0.23 TCGA-D6-6516-01 2 102483019 102483019 C T MAP4K4 Silent p.S700S 0.31 TCGA-D6-6516-01 2 103124678 103124678 C T SLC9A4 Missense_Mutation p.P447S 0.18 tolerated(0.07) probably_damaging(1) TCGA-D6-6516-01 2 105859166 105859166 C T GPR45 Missense_Mutation p.S284F 0.22 deleterious(0) benign(0.012) TCGA-D6-6516-01 2 105859281 105859281 C T GPR45 Silent p.I322I 0.23 TCGA-D6-6516-01 2 108455287 108455287 C T RGPD4 Missense_Mutation p.P91L 0.49 deleterious(0) probably_damaging(0.975) TCGA-D6-6516-01 2 108614398 108614398 G T SLC5A7 Missense_Mutation p.A185S 0.39 deleterious(0) probably_damaging(0.986) TCGA-D6-6516-01 2 108626920 108626920 G A SLC5A7 Missense_Mutation p.G449E 0.26 deleterious(0) probably_damaging(0.973) TCGA-D6-6516-01 2 108627360 108627360 A T SLC5A7 3'UTR 0.12 TCGA-D6-6516-01 2 108917299 108917299 G A SULT1C2 Intron 0.37 TCGA-D6-6516-01 2 111851062 111851062 A C ACOXL Intron 0.35 TCGA-D6-6516-01 2 113299943 113299943 G A POLR1B 5'UTR 0.50 TCGA-D6-6516-01 2 11354483 11354483 C T ROCK2 Silent p.K681K 0.29 TCGA-D6-6516-01 2 11750976 11750976 C T GREB1 Silent p.P943P 0.36 TCGA-D6-6516-01 2 11802337 11802337 G A NTSR2 Silent p.P218P 0.32 TCGA-D6-6516-01 2 121981805 121981805 C T TFCP2L1 3'UTR 0.33 TCGA-D6-6516-01 2 128366402 128366402 C T MYO7B Silent p.F921F 0.52 TCGA-D6-6516-01 2 130785910 130785910 A T FAR2P1 RNA 0.47 TCGA-D6-6516-01 2 131521446 131521446 C T AMER3 Nonsense_Mutation p.R601* 0.24 TCGA-D6-6516-01 2 131878501 131878501 C T PLEKHB2 Intron 0.15 TCGA-D6-6516-01 2 132558652 132558652 C T C2orf27B 5'UTR 0.32 TCGA-D6-6516-01 2 132914701 132914701 C T ANKRD30BL Missense_Mutation p.E118K 0.54 deleterious(0) probably_damaging(0.988) TCGA-D6-6516-01 2 135659396 135659396 C A ACMSD Missense_Mutation p.A326E 0.26 tolerated(1) benign(0.001) TCGA-D6-6516-01 2 136396634 136396634 C T R3HDM1 Silent p.V387V 0.25 TCGA-D6-6516-01 2 136396635 136396635 C T R3HDM1 Silent p.L388L 0.25 TCGA-D6-6516-01 2 136681972 136681972 G A DARS Missense_Mutation p.P221S 0.09 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 2 137872796 137872796 G A THSD7B Silent p.G434G 0.41 TCGA-D6-6516-01 2 141274580 141274580 A G LRP1B Missense_Mutation p.V2676A 0.33 benign(0.153) TCGA-D6-6516-01 2 141294269 141294269 G A LRP1B Missense_Mutation p.S2508F 0.45 possibly_damaging(0.788) TCGA-D6-6516-01 2 141751606 141751606 C T LRP1B Missense_Mutation p.D868N 0.14 probably_damaging(0.962) TCGA-D6-6516-01 2 1457507 1457507 G A TPO Missense_Mutation p.R175Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 2 150071213 150071213 C T LYPD6B Missense_Mutation p.P205S 0.22 benign(0.117) TCGA-D6-6516-01 2 152320883 152320883 C T RIF1 Missense_Mutation p.P1617S 0.20 tolerated(0.3) benign(0.009) TCGA-D6-6516-01 2 152534436 152534436 G A NEB Missense_Mutation p.A1174V 0.21 probably_damaging(0.994) TCGA-D6-6516-01 2 15307441 15307441 C T NBAS Missense_Mutation p.D2283N 0.16 tolerated(0.06) benign(0.006) TCGA-D6-6516-01 2 160206292 160206292 G A BAZ2B Missense_Mutation p.P1597L 0.19 benign(0.042) TCGA-D6-6516-01 2 164466247 164466247 C T FIGN Missense_Mutation p.E699K 0.34 tolerated(0.19) possibly_damaging(0.58) TCGA-D6-6516-01 2 166187837 166187837 C T SCN2A Intron 0.13 TCGA-D6-6516-01 2 166866245 166866245 C T SCN1A Missense_Mutation p.R1329Q 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6516-01 2 167108416 167108416 C T SCN9A Intron 0.38 TCGA-D6-6516-01 2 167298178 167298178 C T SCN7A Missense_Mutation p.D629N 0.48 tolerated(1) benign(0.052) TCGA-D6-6516-01 2 167298179 167298179 T C SCN7A Silent p.K628K 0.48 TCGA-D6-6516-01 2 168105505 168105505 C T XIRP2 Missense_Mutation p.P2535S 0.36 possibly_damaging(0.586) TCGA-D6-6516-01 2 168115157 168115157 A G XIRP2 3'UTR 0.26 TCGA-D6-6516-01 2 169783744 169783744 G A ABCB11 Silent p.T1180T 0.35 TCGA-D6-6516-01 2 169824937 169824937 C T ABCB11 Missense_Mutation p.R692K 0.26 tolerated(0.23) benign(0.029) TCGA-D6-6516-01 2 170038707 170038707 G A LRP2 Missense_Mutation p.P3323L 0.34 probably_damaging(0.983) TCGA-D6-6516-01 2 175962174 175962174 G A ATF2 Missense_Mutation p.P326S 0.18 tolerated(0.1) benign(0.012) TCGA-D6-6516-01 2 177033899 177033899 G A HOXD3 Silent p.K19K 0.20 TCGA-D6-6516-01 2 178482974 178482974 A C TTC30A Missense_Mutation p.N152K 0.21 tolerated(0.07) benign(0.017) TCGA-D6-6516-01 2 179439624 179439624 G A TTN Silent p.T23745T 0.44 TCGA-D6-6516-01 2 179446509 179446509 G A TTN Silent p.F22162F 0.17 TCGA-D6-6516-01 2 179474103 179474103 C T TTN Missense_Mutation p.E17312K 0.08 TCGA-D6-6516-01 2 179486278 179486278 G A TTN Silent p.N15091N 0.11 TCGA-D6-6516-01 2 179500199 179500199 C T TTN Missense_Mutation p.G13951E 0.26 TCGA-D6-6516-01 2 179542597 179542597 C T TTN Missense_Mutation p.E11348K 0.21 TCGA-D6-6516-01 2 179590733 179590733 G A TTN Silent p.T6772T 0.12 TCGA-D6-6516-01 2 179605333 179605333 A T TTN Silent p.P4209P 0.15 TCGA-D6-6516-01 2 179616729 179616729 C T TTN Intron 0.32 TCGA-D6-6516-01 2 179732821 179732821 G A CCDC141 Missense_Mutation p.R836C 0.52 deleterious(0) possibly_damaging(0.54) TCGA-D6-6516-01 2 179742774 179742774 C T CCDC141 Missense_Mutation p.A606T 0.20 tolerated(0.11) benign(0.05) TCGA-D6-6516-01 2 182543494 182543494 C T NEUROD1 Missense_Mutation p.E32K 0.29 deleterious(0.03) benign(0.017) TCGA-D6-6516-01 2 183843628 183843628 G A NCKAP1 Missense_Mutation p.P459S 0.14 tolerated(0.14) probably_damaging(0.924) TCGA-D6-6516-01 2 185802719 185802719 G A ZNF804A Missense_Mutation p.E866K 0.32 tolerated(0.57) benign(0) TCGA-D6-6516-01 2 190426734 190426734 G A SLC40A1 Missense_Mutation p.S529F 0.12 tolerated(0.18) benign(0.213) TCGA-D6-6516-01 2 197729786 197729786 C A PGAP1 Nonsense_Mutation p.G596* 0.38 TCGA-D6-6516-01 2 197990587 197990587 G A ANKRD44 Missense_Mutation p.H146Y 0.14 deleterious(0.02) probably_damaging(0.925) TCGA-D6-6516-01 2 200173603 200173603 G A SATB2 Silent p.T540T 0.19 TCGA-D6-6516-01 2 20131060 20131060 C A WDR35 Missense_Mutation p.Q989H 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-D6-6516-01 2 20234791 20234791 G A LAPTM4A Silent p.A155A 0.21 TCGA-D6-6516-01 2 202725467 202725467 G A CDK15 Intron 0.35 TCGA-D6-6516-01 2 203776182 203776182 T A WDR12 Silent p.T6T 0.22 TCGA-D6-6516-01 2 204055018 204055018 C T NBEAL1 Missense_Mutation p.A2247V 0.32 deleterious(0.02) probably_damaging(1) TCGA-D6-6516-01 2 20647719 20647719 G A RHOB Missense_Mutation p.E165K 0.18 tolerated(0.16) benign(0.031) TCGA-D6-6516-01 2 206480250 206480250 C T PARD3B Missense_Mutation p.P1049S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-D6-6516-01 2 208486555 208486555 C T METTL21A Silent p.L78L 0.11 TCGA-D6-6516-01 2 210559487 210559487 G T MAP2 Nonsense_Mutation p.E865* 0.39 TCGA-D6-6516-01 2 210658545 210658545 C T UNC80 Silent p.S300S 0.49 TCGA-D6-6516-01 2 211503916 211503916 C G CPS1 Missense_Mutation p.L964V 0.09 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 2 21235226 21235226 C A APOB Missense_Mutation p.C1505F 0.17 benign(0.002) TCGA-D6-6516-01 2 21265245 21265245 C T APOB Silent p.R75R 0.17 TCGA-D6-6516-01 2 214149396 214149396 G A SPAG16 Intron 0.25 TCGA-D6-6516-01 2 215610516 215610516 T C BARD1 Silent p.E580E 0.18 TCGA-D6-6516-01 2 216269261 216269261 C T FN1 Missense_Mutation p.R1035Q 0.30 tolerated(0.23) possibly_damaging(0.878) TCGA-D6-6516-01 2 217542855 217542855 C T IGFBP5 Missense_Mutation p.G223R 0.13 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 2 218712421 218712421 G A TNS1 Missense_Mutation p.A815V 0.43 tolerated(0.42) benign(0.002) TCGA-D6-6516-01 2 219208288 219208288 G A PNKD Missense_Mutation p.D283N 0.30 tolerated(0.07) possibly_damaging(0.905) TCGA-D6-6516-01 2 219292994 219292994 C T VIL1 Silent p.L167L 0.16 TCGA-D6-6516-01 2 219508571 219508571 G A ZNF142 Missense_Mutation p.P890S 0.14 deleterious(0.03) possibly_damaging(0.641) TCGA-D6-6516-01 2 219536676 219536676 A G RNF25 Silent p.S6S 0.27 TCGA-D6-6516-01 2 219892419 219892419 G A CCDC108 Missense_Mutation p.P722S 0.14 tolerated(0.68) benign(0.209) TCGA-D6-6516-01 2 220047121 220047121 C T FAM134A Missense_Mutation p.P468S 0.28 tolerated(0.18) benign(0.007) TCGA-D6-6516-01 2 220356873 220356873 G A SPEG Missense_Mutation p.E3168K 0.25 probably_damaging(0.998) TCGA-D6-6516-01 2 220422771 220422771 C T OBSL1 Silent p.G1188G 0.16 TCGA-D6-6516-01 2 222301166 222301166 T C EPHA4 Missense_Mutation p.M767V 0.49 deleterious(0) benign(0.43) TCGA-D6-6516-01 2 222308288 222308288 G A EPHA4 Missense_Mutation p.P605S 0.38 deleterious(0) possibly_damaging(0.906) TCGA-D6-6516-01 2 224760271 224760271 C A WDFY1 Missense_Mutation p.M225I 0.15 tolerated(0.23) benign(0.021) TCGA-D6-6516-01 2 227985823 227985823 G A COL4A4 Silent p.P78P 0.15 TCGA-D6-6516-01 2 228172461 228172461 G A COL4A3 Missense_Mutation p.G1430R 0.18 unknown(0) TCGA-D6-6516-01 2 228398379 228398379 C T AGFG1 Missense_Mutation p.A334V 0.38 tolerated(0.13) benign(0.003) TCGA-D6-6516-01 2 228883697 228883697 G A SPHKAP Silent p.L625L 0.19 TCGA-D6-6516-01 2 230643188 230643198 TAAGAAGCGAA - TRIP12 Frame_Shift_Del p.F1697Wfs*24 0.11 TCGA-D6-6516-01 2 231380363 231380363 C T SP100 Intron 0.11 TCGA-D6-6516-01 2 232578138 232578138 C T PTMA 3'UTR 0.15 TCGA-D6-6516-01 2 233899488 233899488 C T NEU2 Silent p.S288S 0.15 TCGA-D6-6516-01 2 235404769 235404769 G A ARL4C Silent p.T154T 0.14 TCGA-D6-6516-01 2 236708049 236708049 C T AGAP1 Silent p.S280S 0.21 TCGA-D6-6516-01 2 237272434 237272434 C T IQCA1 Missense_Mutation p.A620T 0.13 deleterious(0) benign(0.02) TCGA-D6-6516-01 2 239170870 239170870 C T PER2 Silent p.R423R 0.21 TCGA-D6-6516-01 2 239170871 239170871 C T PER2 Missense_Mutation p.R423K 0.20 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 2 242178142 242178142 G A HDLBP Missense_Mutation p.P891S 0.17 tolerated(0.25) benign(0.162) TCGA-D6-6516-01 2 24236237 24236237 C T MFSD2B Missense_Mutation p.A60V 0.26 deleterious(0.03) probably_damaging(1) TCGA-D6-6516-01 2 242576370 242576370 G C THAP4 Silent p.A21A 0.43 TCGA-D6-6516-01 2 24261404 24261404 G A C2orf44 Missense_Mutation p.L321F 0.14 deleterious(0.03) possibly_damaging(0.449) TCGA-D6-6516-01 2 24283794 24283794 C A FKBP1B Missense_Mutation p.Q66K 0.11 tolerated(0.22) benign(0.021) TCGA-D6-6516-01 2 24433775 24433775 G A ITSN2 Silent p.S1377S 0.24 TCGA-D6-6516-01 2 25457168 25457168 C T DNMT3A Missense_Mutation p.E907K 0.13 deleterious(0) possibly_damaging(0.472) TCGA-D6-6516-01 2 25457169 25457169 C T DNMT3A Silent p.K906K 0.13 TCGA-D6-6516-01 2 25469512 25469512 G A DNMT3A Missense_Mutation p.P419L 0.11 tolerated(0.84) possibly_damaging(0.76) TCGA-D6-6516-01 2 26029098 26029098 C T ASXL2 Silent p.K84K 0.30 TCGA-D6-6516-01 2 26203352 26203352 G C KIF3C Missense_Mutation p.R479G 0.27 benign(0.011) TCGA-D6-6516-01 2 27147884 27147884 C T DPYSL5 Missense_Mutation p.H131Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-D6-6516-01 2 27307867 27307867 G A EMILIN1 Missense_Mutation p.G856S 0.25 probably_damaging(1) TCGA-D6-6516-01 2 27307868 27307868 G A EMILIN1 Missense_Mutation p.G856D 0.25 probably_damaging(1) TCGA-D6-6516-01 2 27479726 27479726 G A SLC30A3 Silent p.F271F 0.25 TCGA-D6-6516-01 2 27481075 27481075 G A SLC30A3 Silent p.S126S 0.30 TCGA-D6-6516-01 2 27599207 27599207 C T SNX17 Silent p.L404L 0.29 TCGA-D6-6516-01 2 28002382 28002382 G T MRPL33 3'UTR 0.31 TCGA-D6-6516-01 2 29259474 29259474 C T FAM179A Missense_Mutation p.S829F 0.17 deleterious(0) probably_damaging(0.928) TCGA-D6-6516-01 2 3193185 3193185 G A TSSC1 Silent p.L362L 0.19 TCGA-D6-6516-01 2 3392406 3392406 C T TRAPPC12 Missense_Mutation p.L338F 0.19 deleterious(0) probably_damaging(0.988) TCGA-D6-6516-01 2 33952789 33952789 G A AC009499.1 Intron 0.11 TCGA-D6-6516-01 2 33952790 33952790 G A AC009499.1 Intron 0.11 TCGA-D6-6516-01 2 3691452 3691452 G A COLEC11 Missense_Mutation p.G201D 0.11 tolerated(0.32) benign(0.056) TCGA-D6-6516-01 2 39406422 39406422 G A CDKL4 Missense_Mutation p.S278F 0.13 deleterious(0.05) benign(0.248) TCGA-D6-6516-01 2 42936241 42936241 G A MTA3 Silent p.K510K 0.44 TCGA-D6-6516-01 2 43779473 43779473 T A THADA Nonsense_Mutation p.K894* 0.26 TCGA-D6-6516-01 2 43992618 43992618 C T PLEKHH2 Missense_Mutation p.H1455Y 0.22 deleterious(0.03) possibly_damaging(0.515) TCGA-D6-6516-01 2 45169459 45169459 C T SIX3 Silent p.A72A 0.47 TCGA-D6-6516-01 2 45169460 45169460 C T SIX3 Missense_Mutation p.P73S 0.45 tolerated(0.12) benign(0.001) TCGA-D6-6516-01 2 48734518 48734518 T G PPP1R21 Nonsense_Mutation p.Y693* 0.15 TCGA-D6-6516-01 2 48809495 48809495 C T STON1-GTF2A1L Missense_Mutation p.P575S 0.13 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 2 48874001 48874001 T C STON1-GTF2A1L Silent p.G970G 0.31 TCGA-D6-6516-01 2 48906536 48906536 G A STON1-GTF2A1L Silent p.G1168G 0.20 TCGA-D6-6516-01 2 49381544 49381544 G A FSHR Silent p.L5L 0.20 TCGA-D6-6516-01 2 51254989 51254989 C T NRXN1 Silent p.K141K 0.10 TCGA-D6-6516-01 2 54891677 54891677 C T SPTBN1 Missense_Mutation p.P2170S 0.26 tolerated(0.12) benign(0.115) TCGA-D6-6516-01 2 55209756 55209756 C T RTN4 Silent p.E1085E 0.33 TCGA-D6-6516-01 2 56420170 56420170 C T CCDC85A Missense_Mutation p.P279S 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D6-6516-01 2 56420171 56420171 C T CCDC85A Missense_Mutation p.P279L 0.29 tolerated_low_confidence(0.09) probably_damaging(0.999) TCGA-D6-6516-01 2 5833795 5833795 C T SOX11 Silent p.S314S 0.35 TCGA-D6-6516-01 2 60689546 60689546 G A BCL11A Silent p.P167P 0.14 TCGA-D6-6516-01 2 64796332 64796332 G A AFTPH Missense_Mutation p.G732R 0.38 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 2 65495895 65495895 C T ACTR2 3'UTR 0.33 TCGA-D6-6516-01 2 68546535 68546535 C T CNRIP1 5'UTR 0.23 TCGA-D6-6516-01 2 69172545 69172545 G A GKN2 Silent p.L170L 0.18 TCGA-D6-6516-01 2 70076805 70076805 C T GMCL1 Missense_Mutation p.P289S 0.15 deleterious(0.04) possibly_damaging(0.612) TCGA-D6-6516-01 2 71892332 71892332 C T DYSF Nonsense_Mutation p.Q1739* 0.07 TCGA-D6-6516-01 2 73447259 73447259 C T SMYD5 Missense_Mutation p.P96S 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-D6-6516-01 2 73447260 73447260 C T SMYD5 Missense_Mutation p.P96L 0.17 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 2 73680577 73680577 C T ALMS1 Missense_Mutation p.S2307F 0.33 possibly_damaging(0.464) TCGA-D6-6516-01 2 73718483 73718483 C T ALMS1 Missense_Mutation p.P3132S 0.16 possibly_damaging(0.818) TCGA-D6-6516-01 2 74701637 74701637 G A CCDC142 3'UTR 0.27 TCGA-D6-6516-01 2 74834236 74834236 C T M1AP Missense_Mutation p.G181R 0.30 tolerated(0.76) possibly_damaging(0.718) TCGA-D6-6516-01 2 79312675 79312675 T G REG1B Missense_Mutation p.T126P 0.14 tolerated(0.27) possibly_damaging(0.803) TCGA-D6-6516-01 2 85782639 85782639 A T GGCX Nonsense_Mutation p.Y231* 0.26 TCGA-D6-6516-01 2 90043646 90043646 C T IGKV2D-24 Missense_Mutation p.L4F 0.63 deleterious(0.04) benign(0.15) TCGA-D6-6516-01 2 96072818 96072818 C T FAHD2A Silent p.P125P 0.11 TCGA-D6-6516-01 2 96789974 96789974 G A ASTL Missense_Mutation p.P304L 0.38 tolerated_low_confidence(0.06) benign(0.005) TCGA-D6-6516-01 2 97024782 97024782 G A NCAPH Splice_Site p.X403_splice 0.28 TCGA-D6-6516-01 2 97526482 97526482 C T SEMA4C Missense_Mutation p.G795R 0.18 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 2 98422128 98422128 G A TMEM131 Silent p.S698S 0.20 TCGA-D6-6516-01 3 100995507 100995507 C T IMPG2 Splice_Site p.X195_splice 0.30 TCGA-D6-6516-01 3 108474621 108474621 C T RETNLB 3'UTR 0.20 TCGA-D6-6516-01 3 111261150 111261150 G T CD96 Missense_Mutation p.V19F 0.37 tolerated(0.16) possibly_damaging(0.542) TCGA-D6-6516-01 3 112991948 112991948 C T BOC Silent p.L332L 0.26 TCGA-D6-6516-01 3 113323756 113323756 G A SIDT1 Splice_Site p.X446_splice 0.14 TCGA-D6-6516-01 3 113723462 113723462 G A KIAA1407 Intron 0.17 TCGA-D6-6516-01 3 113858410 113858410 C T DRD3 Silent p.R220R 0.35 TCGA-D6-6516-01 3 119325781 119325781 C A PLA1A Missense_Mutation p.F78L 0.21 deleterious(0) possibly_damaging(0.896) TCGA-D6-6516-01 3 121151809 121151809 G A POLQ Missense_Mutation p.H2539Y 0.51 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 3 121207527 121207527 G A POLQ Silent p.F1417F 0.14 TCGA-D6-6516-01 3 121828255 121828255 G A CD86 Missense_Mutation p.G283R 0.18 tolerated(0.36) benign(0.05) TCGA-D6-6516-01 3 12198975 12198975 C T TIMP4 Silent p.R49R 0.28 TCGA-D6-6516-01 3 122003885 122003885 G A CASR Silent p.Q1038Q 0.18 TCGA-D6-6516-01 3 122003886 122003886 G A CASR Missense_Mutation p.E1039K 0.16 tolerated_low_confidence(0.21) benign(0.031) TCGA-D6-6516-01 3 125639737 125639737 C A FAM86JP RNA 0.16 TCGA-D6-6516-01 3 125855667 125855667 C T ALDH1L1 Silent p.G438G 0.19 TCGA-D6-6516-01 3 129267879 129267879 G A H1FOO Silent p.R138R 0.13 TCGA-D6-6516-01 3 129292537 129292537 C T PLXND1 Missense_Mutation p.G913R 0.24 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 3 129695865 129695865 G A TRH Missense_Mutation p.D179N 0.33 tolerated(0.37) benign(0.068) TCGA-D6-6516-01 3 130313125 130313125 G A COL6A6 Missense_Mutation p.G1491R 0.13 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 3 130452399 130452399 G A PIK3R4 Silent p.A481A 0.13 TCGA-D6-6516-01 3 13407500 13407500 G A NUP210 Silent p.H626H 0.19 TCGA-D6-6516-01 3 136046022 136046022 C T PCCB Silent p.I428I 0.44 TCGA-D6-6516-01 3 136708318 136708318 G A IL20RB Missense_Mutation p.D148N 0.13 deleterious(0.04) benign(0.013) TCGA-D6-6516-01 3 138669432 138669432 C T C3orf72 3'UTR 0.15 TCGA-D6-6516-01 3 141499323 141499323 G A GRK7 Silent p.K240K 0.18 TCGA-D6-6516-01 3 142048324 142048324 G A XRN1 Silent p.S1451S 0.24 TCGA-D6-6516-01 3 143371183 143371183 G A SLC9A9 Silent p.F223F 0.27 TCGA-D6-6516-01 3 149205446 149205446 G A TM4SF4 Missense_Mutation p.G102E 0.23 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 3 150690369 150690369 C T CLRN1 Missense_Mutation p.G43R 0.18 deleterious(0) probably_damaging(0.988) TCGA-D6-6516-01 3 150876480 150876480 G A MED12L Missense_Mutation p.G244E 0.24 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 3 151155338 151155338 C T IGSF10 Silent p.P2337P 0.37 TCGA-D6-6516-01 3 157082173 157082173 C T VEPH1 Missense_Mutation p.G419E 0.13 tolerated(1) benign(0) TCGA-D6-6516-01 3 157099102 157099102 G A VEPH1 Missense_Mutation p.H324Y 0.16 tolerated(0.06) possibly_damaging(0.864) TCGA-D6-6516-01 3 165503942 165503942 C A BCHE Nonsense_Mutation p.E559* 0.19 TCGA-D6-6516-01 3 169540214 169540214 G A LRRIQ4 Missense_Mutation p.E169K 0.13 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 3 171443857 171443857 G A PLD1 Missense_Mutation p.L206F 0.23 deleterious(0.04) possibly_damaging(0.857) TCGA-D6-6516-01 3 17226675 17226675 G A TBC1D5 Missense_Mutation p.S615F 0.14 deleterious(0) probably_damaging(0.993) TCGA-D6-6516-01 3 179104303 179104303 G A MFN1 Nonsense_Mutation p.W633* 0.24 TCGA-D6-6516-01 3 179104304 179104304 G A MFN1 Nonsense_Mutation p.W633* 0.24 TCGA-D6-6516-01 3 179576913 179576913 G A PEX5L Silent p.S253S 0.23 TCGA-D6-6516-01 3 183014690 183014690 C T MCF2L2 Intron 0.31 TCGA-D6-6516-01 3 183217505 183217505 C T KLHL6 Silent p.L340L 0.18 TCGA-D6-6516-01 3 183368285 183368285 C T KLHL24 Silent p.S47S 0.17 TCGA-D6-6516-01 3 183508723 183508723 C T YEATS2 Missense_Mutation p.L1018F 0.22 deleterious_low_confidence(0.01) benign(0.408) TCGA-D6-6516-01 3 183756374 183756374 G A HTR3D Missense_Mutation p.G366E 0.12 tolerated(0.58) benign(0.163) TCGA-D6-6516-01 3 183778237 183778237 G A HTR3C 3'UTR 0.21 TCGA-D6-6516-01 3 184064422 184064422 G C CLCN2 Missense_Mutation p.P890R 0.10 tolerated(0.09) benign(0.039) TCGA-D6-6516-01 3 184071990 184071990 C T CLCN2 Silent p.L540L 0.17 TCGA-D6-6516-01 3 185146818 185146818 C T MAP3K13 Missense_Mutation p.S150F 0.17 deleterious(0.02) benign(0.328) TCGA-D6-6516-01 3 185643253 185643253 C G TRA2B Missense_Mutation p.R111P 0.21 deleterious(0.01) possibly_damaging(0.483) TCGA-D6-6516-01 3 186953612 186953612 G A MASP1 Silent p.L683L 0.40 TCGA-D6-6516-01 3 190122651 190122651 C T CLDN16 Silent p.L176L 0.22 TCGA-D6-6516-01 3 190363561 190363561 C T IL1RAP Silent p.L425L 0.36 TCGA-D6-6516-01 3 190363562 190363562 C T IL1RAP Missense_Mutation p.R426C 0.36 deleterious(0) probably_damaging(0.975) TCGA-D6-6516-01 3 190930354 190930354 C T OSTN Silent p.F11F 0.43 TCGA-D6-6516-01 3 192980899 192980899 C T HRASLS Missense_Mutation p.P199S 0.20 deleterious(0.02) probably_damaging(1) TCGA-D6-6516-01 3 193174805 193174805 A T ATP13A4 Missense_Mutation p.F633L 0.26 tolerated(0.85) benign(0.123) TCGA-D6-6516-01 3 194390864 194390864 A G LSG1 Silent p.L34L 0.26 TCGA-D6-6516-01 3 195516890 195516890 G A MUC4 Missense_Mutation p.P521S 0.24 unknown(0) TCGA-D6-6516-01 3 197427593 197427593 G A KIAA0226 Silent p.L384L 0.16 TCGA-D6-6516-01 3 197432014 197432014 G A KIAA0226 Silent p.F84F 0.15 TCGA-D6-6516-01 3 20113935 20113935 T C KAT2B Silent p.S138S 0.19 TCGA-D6-6516-01 3 25542804 25542804 G T RARB Missense_Mutation p.M146I 0.32 deleterious(0) benign(0.01) TCGA-D6-6516-01 3 2777999 2777999 T A CNTN4 Silent p.V52V 0.24 TCGA-D6-6516-01 3 29938882 29938882 A C RBMS3 Silent p.S268S 0.25 TCGA-D6-6516-01 3 3081678 3081678 G A CNTN4 Intron 0.60 TCGA-D6-6516-01 3 32995339 32995339 C T CCR4 Missense_Mutation p.A142V 0.24 tolerated(0.06) benign(0.063) TCGA-D6-6516-01 3 33058317 33058317 G A GLB1 Missense_Mutation p.L455F 0.21 deleterious(0.03) probably_damaging(0.979) TCGA-D6-6516-01 3 33058318 33058318 G A GLB1 Silent p.V454V 0.21 TCGA-D6-6516-01 3 33109732 33109732 G A GLB1 Silent p.S149S 0.22 TCGA-D6-6516-01 3 33109733 33109733 G A GLB1 Missense_Mutation p.S149F 0.23 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 3 33194670 33194670 G A SUSD5 Missense_Mutation p.T485I 0.19 deleterious(0.02) benign(0.06) TCGA-D6-6516-01 3 37033026 37033026 T C EPM2AIP1 Missense_Mutation p.N515D 0.32 tolerated(0.58) benign(0.001) TCGA-D6-6516-01 3 38087117 38087117 G A DLEC1 Silent p.A165A 0.20 TCGA-D6-6516-01 3 383653 383653 C T CHL1 Silent p.Y189Y 0.19 TCGA-D6-6516-01 3 38409713 38409713 T C XYLB Missense_Mutation p.F204S 0.24 deleterious(0) probably_damaging(0.981) TCGA-D6-6516-01 3 38639322 38639322 G T SCN5A Missense_Mutation p.D720E 0.10 tolerated(0.29) benign(0.03) TCGA-D6-6516-01 3 38739520 38739520 C T SCN10A Missense_Mutation p.E1731K 0.18 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 3 38743591 38743591 G A SCN10A Nonsense_Mutation p.Q1466* 0.15 TCGA-D6-6516-01 3 38748836 38748836 C T SCN10A Silent p.K1440K 0.31 TCGA-D6-6516-01 3 44541713 44541713 G A ZNF852 Missense_Mutation p.P186S 0.26 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 3 4461817 4461817 G A SUMF1 Missense_Mutation p.P178L 0.22 deleterious(0.02) benign(0.412) TCGA-D6-6516-01 3 46306731 46306731 G A CCR3 Missense_Mutation p.D49N 0.21 tolerated(0.7) benign(0.005) TCGA-D6-6516-01 3 47378140 47378140 C T KLHL18 Silent p.L338L 0.36 TCGA-D6-6516-01 3 4808218 4808218 C T ITPR1 Missense_Mutation p.S1835F 0.17 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 3 4836803 4836803 C T ITPR1 Missense_Mutation p.S2273L 0.12 tolerated(0.2) benign(0.283) TCGA-D6-6516-01 3 48447184 48447184 C T PLXNB1 Missense_Mutation p.A2084T 0.25 tolerated(0.72) benign(0.075) TCGA-D6-6516-01 3 48447185 48447185 C T PLXNB1 Silent p.G2083G 0.28 TCGA-D6-6516-01 3 48677667 48677667 C T CELSR3 Silent p.R3117R 0.35 TCGA-D6-6516-01 3 48681721 48681721 C T CELSR3 Missense_Mutation p.G2698E 0.25 deleterious(0.04) probably_damaging(1) TCGA-D6-6516-01 3 48685393 48685393 G A CELSR3 Missense_Mutation p.P2337L 0.26 tolerated(0.34) benign(0.01) TCGA-D6-6516-01 3 49163577 49163577 G A LAMB2 Missense_Mutation p.R723C 0.31 deleterious(0.02) possibly_damaging(0.691) TCGA-D6-6516-01 3 50332191 50332191 G A HYAL3 Silent p.V281V 0.28 TCGA-D6-6516-01 3 51394395 51394395 G A DOCK3 Silent p.V1502V 0.29 TCGA-D6-6516-01 3 52544384 52544384 C T STAB1 Missense_Mutation p.S883F 0.21 deleterious(0) benign(0.058) TCGA-D6-6516-01 3 52554682 52554682 G A STAB1 Missense_Mutation p.E1892K 0.29 tolerated(0.18) benign(0.41) TCGA-D6-6516-01 3 52676029 52676029 G A PBRM1 Missense_Mutation p.S343L 0.20 deleterious(0.04) possibly_damaging(0.504) TCGA-D6-6516-01 3 52836770 52836770 T C ITIH3 Missense_Mutation p.Y553H 0.19 tolerated(0.36) benign(0.006) TCGA-D6-6516-01 3 53157826 53157826 G A RFT1 Silent p.F60F 0.21 TCGA-D6-6516-01 3 53221364 53221364 C T PRKCD Missense_Mutation p.A454V 0.16 deleterious(0.02) possibly_damaging(0.6) TCGA-D6-6516-01 3 56183087 56183087 C T ERC2 Missense_Mutation p.G408D 0.27 deleterious(0) possibly_damaging(0.864) TCGA-D6-6516-01 3 59737947 59737947 C T FHIT 3'UTR 0.12 TCGA-D6-6516-01 3 62188887 62188887 T C PTPRG Missense_Mutation p.I473T 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-D6-6516-01 3 62257095 62257095 G A PTPRG Missense_Mutation p.R1016K 0.18 tolerated(0.07) probably_damaging(0.986) TCGA-D6-6516-01 3 63823658 63823658 G A THOC7 Missense_Mutation p.R116C 0.29 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 3 63976037 63976037 C T ATXN7 Missense_Mutation p.P516L 0.25 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 3 64587787 64587787 G A ADAMTS9 Missense_Mutation p.P1284S 0.25 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 3 64587788 64587788 G A ADAMTS9 Silent p.I1283I 0.26 TCGA-D6-6516-01 3 74418486 74418486 A C CNTN3 Missense_Mutation p.L267R 0.35 tolerated(0.35) benign(0.012) TCGA-D6-6516-01 3 93803120 93803120 G A NSUN3 Missense_Mutation p.G98S 0.17 tolerated(0.75) benign(0.007) TCGA-D6-6516-01 3 97887665 97887665 G A OR5H15 Missense_Mutation p.G41E 0.33 deleterious(0) probably_damaging(0.925) TCGA-D6-6516-01 3 98188840 98188840 C T OR5K1 Silent p.L140L 0.17 TCGA-D6-6516-01 3 9882388 9882388 G A RPUSD3 Missense_Mutation p.T170I 0.19 deleterious(0.03) benign(0.061) TCGA-D6-6516-01 3 9982847 9982847 G T CRELD1 Missense_Mutation p.L230F 0.27 tolerated(0.12) possibly_damaging(0.807) TCGA-D6-6516-01 4 100065431 100065431 C T ADH4 5'UTR 0.17 TCGA-D6-6516-01 4 101108829 101108829 C T DDIT4L 3'UTR 0.22 TCGA-D6-6516-01 4 110788925 110788925 G A LRIT3 Missense_Mutation p.G240R 0.35 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 4 110884393 110884393 G A EGF Nonsense_Mutation p.W459* 0.17 TCGA-D6-6516-01 4 123372890 123372890 T G IL2 3'UTR 0.24 TCGA-D6-6516-01 4 125590149 125590149 G A ANKRD50 Missense_Mutation p.P1428L 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D6-6516-01 4 125590150 125590150 G A ANKRD50 Missense_Mutation p.P1428S 0.31 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D6-6516-01 4 126241562 126241562 A G FAT4 Silent p.E1332E 0.12 TCGA-D6-6516-01 4 126411359 126411359 C T FAT4 Missense_Mutation p.T4461I 0.23 benign(0.08) TCGA-D6-6516-01 4 126411360 126411360 C T FAT4 Silent p.T4461T 0.23 TCGA-D6-6516-01 4 129778492 129778492 G A JADE1 Splice_Site p.X289_splice 0.35 TCGA-D6-6516-01 4 145580019 145580019 C T HHIP Missense_Mutation p.P184S 0.24 tolerated(0.54) benign(0.339) TCGA-D6-6516-01 4 151504695 151504695 C T MAB21L2 Missense_Mutation p.P172S 0.18 deleterious(0.05) probably_damaging(0.973) TCGA-D6-6516-01 4 154641439 154641439 G A RNF175 Missense_Mutation p.S176F 0.19 tolerated(0.7) possibly_damaging(0.678) TCGA-D6-6516-01 4 155157613 155157613 C T DCHS2 Missense_Mutation p.E2276K 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 4 155533728 155533728 G A FGG Missense_Mutation p.L12F 0.16 tolerated_low_confidence(0.08) benign(0.006) TCGA-D6-6516-01 4 15572023 15572023 T A CC2D2A Missense_Mutation p.D1166E 0.21 deleterious(0) possibly_damaging(0.839) TCGA-D6-6516-01 4 175898866 175898866 C T ADAM29 Silent p.P730P 0.18 TCGA-D6-6516-01 4 177041154 177041154 C T WDR17 Silent p.F172F 0.20 TCGA-D6-6516-01 4 177077242 177077242 C T WDR17 Silent p.L849L 0.19 TCGA-D6-6516-01 4 183659600 183659600 G A TENM3 Nonsense_Mutation p.W1094* 0.18 TCGA-D6-6516-01 4 186366547 186366547 C T CCDC110 3'UTR 0.41 TCGA-D6-6516-01 4 186536271 186536271 C T SORBS2 Silent p.R994R 0.20 TCGA-D6-6516-01 4 187209782 187209782 G A F11 3'UTR 0.17 TCGA-D6-6516-01 4 189064937 189064937 C T TRIML1 Intron 0.13 TCGA-D6-6516-01 4 206549 206549 A C ZNF876P RNA 0.38 TCGA-D6-6516-01 4 23815563 23815563 C T PPARGC1A Missense_Mutation p.E515K 0.34 tolerated(0.1) probably_damaging(0.939) TCGA-D6-6516-01 4 25665876 25665876 G A SLC34A2 Silent p.L101L 0.18 TCGA-D6-6516-01 4 26483501 26483501 C T CCKAR Missense_Mutation p.G349E 0.23 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 4 3230704 3230704 C T HTT Missense_Mutation p.P2693S 0.30 probably_damaging(0.998) TCGA-D6-6516-01 4 38126639 38126639 G A TBC1D1 Missense_Mutation p.G1007R 0.16 deleterious(0) probably_damaging(0.98) TCGA-D6-6516-01 4 40351346 40351346 G T CHRNA9 Silent p.L271L 0.21 TCGA-D6-6516-01 4 44176701 44176701 G T KCTD8 3'UTR 0.55 TCGA-D6-6516-01 4 44176945 44176945 C T KCTD8 Silent p.K428K 0.19 TCGA-D6-6516-01 4 48542476 48542476 G A FRYL Silent p.F2063F 0.18 TCGA-D6-6516-01 4 52938270 52938270 C A SPATA18 Missense_Mutation p.L236M 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-D6-6516-01 4 54294260 54294260 C T FIP1L1 Missense_Mutation p.P362S 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-D6-6516-01 4 54327026 54327026 C T LNX1 3'UTR 0.34 TCGA-D6-6516-01 4 55161518 55161518 G A PDGFRA 3'UTR 0.13 TCGA-D6-6516-01 4 57181222 57181222 G A KIAA1211 Silent p.K518K 0.15 TCGA-D6-6516-01 4 57181223 57181223 G A KIAA1211 Missense_Mutation p.V519M 0.15 tolerated(0.21) possibly_damaging(0.781) TCGA-D6-6516-01 4 57389990 57389990 C T ARL9 Missense_Mutation p.T107I 0.13 tolerated(0.23) benign(0.01) TCGA-D6-6516-01 4 57842906 57842906 G A NOA1 Silent p.G282G 0.11 TCGA-D6-6516-01 4 668058 668058 G A MYL5 5'Flank 0.29 TCGA-D6-6516-01 4 69682215 69682215 G C UGT2B10 Missense_Mutation p.A160P 0.28 deleterious(0) probably_damaging(0.982) TCGA-D6-6516-01 4 69682395 69682395 G T UGT2B10 Missense_Mutation p.D220Y 0.17 deleterious(0) benign(0.141) TCGA-D6-6516-01 4 69962535 69962535 C T UGT2B7 Silent p.D99D 0.26 TCGA-D6-6516-01 4 70462099 70462099 C T UGT2A1 Missense_Mutation p.E289K 0.14 deleterious(0.01) possibly_damaging(0.692) TCGA-D6-6516-01 4 70810588 70810588 A G CSN1S1 Silent p.Q141Q 0.33 TCGA-D6-6516-01 4 71020140 71020140 G A C4orf40 Silent p.R16R 0.16 TCGA-D6-6516-01 4 71068544 71068544 C T ODAM Silent p.F240F 0.29 TCGA-D6-6516-01 4 71347144 71347144 C T MUC7 Missense_Mutation p.S228F 0.22 deleterious(0.01) unknown(0) TCGA-D6-6516-01 4 72397869 72397869 C T SLC4A4 Silent p.L753L 0.12 TCGA-D6-6516-01 4 72425848 72425848 C T SLC4A4 Silent p.Y992Y 0.21 TCGA-D6-6516-01 4 74279194 74279194 G A ALB Missense_Mutation p.E301K 0.24 tolerated(0.7) benign(0.005) TCGA-D6-6516-01 4 75673329 75673329 C T BTC Silent p.K153K 0.19 TCGA-D6-6516-01 4 76489445 76489445 C T C4orf26 Missense_Mutation p.P78L 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-D6-6516-01 4 77631416 77631416 G A SHROOM3 Missense_Mutation p.G144E 0.14 deleterious(0.02) possibly_damaging(0.567) TCGA-D6-6516-01 4 77817038 77817038 C G SOWAHB Missense_Mutation p.K655N 0.16 tolerated(0.09) possibly_damaging(0.728) TCGA-D6-6516-01 4 8242717 8242717 G T SH3TC1 3'UTR 0.20 TCGA-D6-6516-01 4 86988967 86988967 T G MAPK10 Missense_Mutation p.D315A 0.38 deleterious(0.02) probably_damaging(0.989) TCGA-D6-6516-01 4 88047294 88047294 C T AFF1 Missense_Mutation p.P873S 0.19 tolerated(0.31) unknown(0) TCGA-D6-6516-01 4 88394947 88394947 C T SPARCL1 Missense_Mutation p.D659N 0.21 tolerated(0.26) benign(0.102) TCGA-D6-6516-01 4 88732536 88732536 C T IBSP Missense_Mutation p.A143V 0.29 tolerated(0.14) benign(0.022) TCGA-D6-6516-01 4 88767143 88767143 C A MEPE Missense_Mutation p.P375T 0.21 deleterious(0) probably_damaging(0.98) TCGA-D6-6516-01 4 96091343 96091343 A T UNC5C Missense_Mutation p.H864Q 0.32 tolerated(0.21) benign(0.038) TCGA-D6-6516-01 4 961572 961572 G A DGKQ Missense_Mutation p.A277V 0.20 tolerated(0.35) benign(0.001) TCGA-D6-6516-01 4 9784209 9784209 G A DRD5 Missense_Mutation p.A186T 0.22 tolerated(0.77) benign(0.063) TCGA-D6-6516-01 5 111541182 111541182 C T EPB41L4A Missense_Mutation p.E400K 0.21 tolerated(0.37) benign(0.388) TCGA-D6-6516-01 5 11159760 11159760 G A CTNND2 Missense_Mutation p.S696L 0.21 deleterious(0.02) benign(0.222) TCGA-D6-6516-01 5 121188057 121188057 G A FTMT Silent p.Q133Q 0.18 TCGA-D6-6516-01 5 1240774 1240774 G A SLC6A18 Missense_Mutation p.R325K 0.22 tolerated(0.57) benign(0.14) TCGA-D6-6516-01 5 128957966 128957966 A C ADAMTS19 Silent p.P559P 0.13 TCGA-D6-6516-01 5 132535173 132535173 C T FSTL4 Missense_Mutation p.E715K 0.12 tolerated(0.4) benign(0.005) TCGA-D6-6516-01 5 134002527 134002527 C T SEC24A Missense_Mutation p.P194S 0.15 deleterious(0.01) benign(0.015) TCGA-D6-6516-01 5 134364547 134364547 G A PITX1 Silent p.S289S 0.22 TCGA-D6-6516-01 5 137056259 137056259 G A KLHL3 Missense_Mutation p.S10F 0.18 tolerated_low_confidence(0.15) benign(0.001) TCGA-D6-6516-01 5 13717484 13717484 C T DNAH5 Silent p.A4215A 0.12 TCGA-D6-6516-01 5 13719151 13719151 C T DNAH5 Missense_Mutation p.M4113I 0.21 benign(0.072) TCGA-D6-6516-01 5 137426723 137426723 C T WNT8A Silent p.S339S 0.19 TCGA-D6-6516-01 5 137507796 137507796 G A BRD8 Silent p.P48P 0.36 TCGA-D6-6516-01 5 13766128 13766128 G A DNAH5 Missense_Mutation p.S3353F 0.19 benign(0.046) TCGA-D6-6516-01 5 137803789 137803789 G A EGR1 3'UTR 0.16 TCGA-D6-6516-01 5 138858007 138858007 G A TMEM173 Missense_Mutation p.P203S 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 5 138858008 138858008 G A TMEM173 Silent p.L202L 0.13 TCGA-D6-6516-01 5 139905595 139905595 C T ANKHD1 Missense_Mutation p.P1503S 0.15 possibly_damaging(0.641) TCGA-D6-6516-01 5 140167698 140167698 C T PCDHA1 Missense_Mutation p.S608F 0.43 tolerated_low_confidence(0.08) probably_damaging(0.975) TCGA-D6-6516-01 5 140176833 140176833 G A PCDHA2 Missense_Mutation p.E762K 0.11 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-D6-6516-01 5 140186711 140186711 A G PCDHA4 5'Flank 0.51 TCGA-D6-6516-01 5 140186720 140186720 C T PCDHA4 5'Flank 0.16 TCGA-D6-6516-01 5 140186879 140186879 C T PCDHA4 Missense_Mutation p.S36F 0.17 deleterious_low_confidence(0.02) benign(0.148) TCGA-D6-6516-01 5 140186880 140186880 C T PCDHA4 Silent p.S36S 0.18 TCGA-D6-6516-01 5 140187186 140187186 G A PCDHA4 Silent p.K138K 0.31 TCGA-D6-6516-01 5 140207705 140207705 G A PCDHA6 Missense_Mutation p.G10E 0.18 tolerated_low_confidence(0.16) benign(0.019) TCGA-D6-6516-01 5 140215952 140215952 A G PCDHA7 Missense_Mutation p.T662A 0.19 deleterious_low_confidence(0.03) probably_damaging(0.97) TCGA-D6-6516-01 5 140236455 140236455 G A PCDHA10 Silent p.K274K 0.35 TCGA-D6-6516-01 5 140249753 140249753 C T PCDHA11 Silent p.S355S 0.36 TCGA-D6-6516-01 5 140256918 140256918 C T PCDHA12 Missense_Mutation p.P621S 0.44 deleterious_low_confidence(0) possibly_damaging(0.45) TCGA-D6-6516-01 5 140263335 140263335 G A PCDHA13 Silent p.L494L 0.32 TCGA-D6-6516-01 5 140263918 140263918 C T PCDHA13 Missense_Mutation p.P689S 0.24 tolerated_low_confidence(0.38) benign(0.001) TCGA-D6-6516-01 5 140306562 140306562 G A PCDHAC1 Missense_Mutation p.E29K 0.18 deleterious(0) probably_damaging(0.987) TCGA-D6-6516-01 5 140475886 140475886 C T PCDHB2 Silent p.S504S 0.16 TCGA-D6-6516-01 5 140476585 140476585 G A PCDHB2 Silent p.Q737Q 0.22 TCGA-D6-6516-01 5 140558982 140558982 C T PCDHB8 Missense_Mutation p.S456F 0.10 deleterious_low_confidence(0.01) benign(0.015) TCGA-D6-6516-01 5 140572021 140572021 A C PCDHB10 5'UTR 0.50 TCGA-D6-6516-01 5 140719238 140719238 G A PCDHGA2 Missense_Mutation p.D234N 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D6-6516-01 5 140723787 140723787 G A PCDHGA3 Missense_Mutation p.G63R 0.16 tolerated_low_confidence(0.09) possibly_damaging(0.712) TCGA-D6-6516-01 5 140729974 140729974 C A PCDHGB1 Silent p.A49A 0.11 TCGA-D6-6516-01 5 140740533 140740533 C T PCDHGB2 Silent p.I277I 0.25 TCGA-D6-6516-01 5 140755911 140755911 C T PCDHGA6 Missense_Mutation p.S754F 0.13 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D6-6516-01 5 140774687 140774687 C T PCDHGA8 Silent p.I769I 0.18 TCGA-D6-6516-01 5 140783618 140783618 C T PCDHGA9 Missense_Mutation p.L367F 0.52 deleterious_low_confidence(0.01) benign(0.027) TCGA-D6-6516-01 5 140795153 140795153 C T PCDHGA10 Missense_Mutation p.P804L 0.15 tolerated_low_confidence(0.64) benign(0.001) TCGA-D6-6516-01 5 140811010 140811010 C T PCDHGA12 Silent p.I228I 0.14 TCGA-D6-6516-01 5 140953082 140953082 G A DIAPH1 Missense_Mutation p.L779F 0.39 probably_damaging(0.991) TCGA-D6-6516-01 5 141041370 141041370 G A ARAP3 Intron 0.11 TCGA-D6-6516-01 5 141041376 141041376 G A ARAP3 Intron 0.11 TCGA-D6-6516-01 5 141051154 141051154 G A ARAP3 Missense_Mutation p.H613Y 0.19 deleterious(0) possibly_damaging(0.877) TCGA-D6-6516-01 5 145493547 145493547 G A LARS 3'UTR 0.29 TCGA-D6-6516-01 5 147781995 147781995 C T FBXO38 Missense_Mutation p.R171C 0.41 deleterious(0) probably_damaging(0.992) TCGA-D6-6516-01 5 148712312 148712312 G A AFAP1L1 Missense_Mutation p.R677Q 0.38 deleterious(0.01) possibly_damaging(0.705) TCGA-D6-6516-01 5 149500535 149500535 G A PDGFRB Silent p.I834I 0.22 TCGA-D6-6516-01 5 149514449 149514449 C T PDGFRB Silent p.G165G 0.30 TCGA-D6-6516-01 5 149755775 149755775 C T TCOF1 Missense_Mutation p.P675L 0.19 deleterious(0.02) possibly_damaging(0.679) TCGA-D6-6516-01 5 149772279 149772279 C T TCOF1 Missense_Mutation p.P1176S 0.12 deleterious(0.05) possibly_damaging(0.55) TCGA-D6-6516-01 5 149786873 149786873 C T CD74 Missense_Mutation p.G47E 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-D6-6516-01 5 150892006 150892006 G A FAT2 Silent p.S3875S 0.36 TCGA-D6-6516-01 5 151235901 151235901 G A GLRA1 Missense_Mutation p.P174S 0.13 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 5 153190723 153190723 A G GRIA1 Missense_Mutation p.M897V 0.54 tolerated_low_confidence(1) benign(0.004) TCGA-D6-6516-01 5 154396760 154396760 G T KIF4B Missense_Mutation p.C1114F 0.11 deleterious(0) probably_damaging(0.986) TCGA-D6-6516-01 5 156390258 156390258 A G TIMD4 5'UTR 0.31 TCGA-D6-6516-01 5 156533648 156533648 G A HAVCR2 Silent p.V128V 0.27 TCGA-D6-6516-01 5 157065262 157065262 G A SOX30 Missense_Mutation p.P619L 0.34 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 5 158223460 158223460 T C EBF1 Missense_Mutation p.S268G 0.20 deleterious(0.01) possibly_damaging(0.89) TCGA-D6-6516-01 5 160033861 160033861 G A ATP10B Missense_Mutation p.S1024F 0.11 deleterious(0) probably_damaging(0.972) TCGA-D6-6516-01 5 16067520 16067520 C T MARCH11 3'UTR 0.16 TCGA-D6-6516-01 5 161113294 161113294 A C GABRA6 Missense_Mutation p.S33R 0.23 deleterious(0) possibly_damaging(0.861) TCGA-D6-6516-01 5 161128799 161128799 G C GABRA6 3'UTR 0.37 TCGA-D6-6516-01 5 161580465 161580465 G A GABRG2 3'UTR 0.10 TCGA-D6-6516-01 5 16668425 16668425 G A MYO10 Silent p.I2012I 0.40 TCGA-D6-6516-01 5 167812284 167812284 C T WWC1 Silent p.L100L 0.16 TCGA-D6-6516-01 5 175933836 175933836 C T FAF2 Missense_Mutation p.P408L 0.40 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 5 176797953 176797953 C A RGS14 Missense_Mutation p.P392H 0.08 deleterious(0) probably_damaging(0.954) TCGA-D6-6516-01 5 178359013 178359013 G A ZFP2 Silent p.Q233Q 0.18 TCGA-D6-6516-01 5 180582348 180582348 C T OR2V2 Missense_Mutation p.L136F 0.39 deleterious(0.04) benign(0.078) TCGA-D6-6516-01 5 23522980 23522980 G A PRDM9 Missense_Mutation p.G290R 0.19 deleterious(0.02) possibly_damaging(0.824) TCGA-D6-6516-01 5 23526913 23526913 G A PRDM9 Silent p.R572R 0.40 TCGA-D6-6516-01 5 251133 251133 C T SDHA Silent p.F526F 0.16 TCGA-D6-6516-01 5 33684050 33684050 C T ADAMTS12 Missense_Mutation p.E249K 0.20 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 5 36986250 36986250 G A NIPBL Missense_Mutation p.G990R 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.764) TCGA-D6-6516-01 5 376767 376767 C T AHRR Missense_Mutation p.P100L 0.23 tolerated(0.29) benign(0.015) TCGA-D6-6516-01 5 38482070 38482070 T G LIFR Missense_Mutation p.Y974S 0.20 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 5 39202420 39202420 G A FYB Missense_Mutation p.P225S 0.15 tolerated(1) benign(0.008) TCGA-D6-6516-01 5 41018504 41018504 T C MROH2B Missense_Mutation p.K901R 0.12 tolerated(0.47) benign(0.012) TCGA-D6-6516-01 5 41158837 41158837 G A C6 Missense_Mutation p.P636L 0.35 tolerated(0.81) benign(0.004) TCGA-D6-6516-01 5 41158838 41158838 G A C6 Missense_Mutation p.P636S 0.36 tolerated(0.44) benign(0.157) TCGA-D6-6516-01 5 41161795 41161795 C A C6 Missense_Mutation p.E486D 0.36 deleterious(0.03) possibly_damaging(0.845) TCGA-D6-6516-01 5 41313799 41313799 C T PLCXD3 Missense_Mutation p.D296N 0.38 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 5 42719110 42719110 C T GHR Missense_Mutation p.L501F 0.34 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 5 49707071 49707071 G A EMB Missense_Mutation p.L115F 0.23 tolerated(0.7) benign(0.023) TCGA-D6-6516-01 5 55056103 55056103 G A DDX4 Missense_Mutation p.R68K 0.23 tolerated_low_confidence(0.21) benign(0.008) TCGA-D6-6516-01 5 55195921 55195921 C T IL31RA Missense_Mutation p.P344S 0.17 deleterious(0.04) benign(0.251) TCGA-D6-6516-01 5 76264687 76264687 G A CRHBP Missense_Mutation p.E316K 0.14 deleterious(0.03) benign(0.437) TCGA-D6-6516-01 5 78325767 78325767 G A DMGDH Missense_Mutation p.L592F 0.27 tolerated(0.59) benign(0.012) TCGA-D6-6516-01 5 78338147 78338147 G A DMGDH Silent p.P384P 0.19 TCGA-D6-6516-01 5 78587049 78587049 C T JMY Missense_Mutation p.S485F 0.42 deleterious(0) probably_damaging(0.977) TCGA-D6-6516-01 5 78610464 78610464 C T JMY Missense_Mutation p.P817S 0.26 tolerated(0.39) probably_damaging(0.999) TCGA-D6-6516-01 5 78610465 78610465 C T JMY Missense_Mutation p.P817L 0.24 tolerated(0.33) probably_damaging(0.999) TCGA-D6-6516-01 5 79351645 79351645 T A THBS4 Missense_Mutation p.H110Q 0.18 tolerated(0.16) benign(0.003) TCGA-D6-6516-01 5 82837304 82837304 C T VCAN Missense_Mutation p.P2828S 0.13 tolerated(0.25) benign(0.292) TCGA-D6-6516-01 5 89802421 89802421 A C POLR3G Missense_Mutation p.K172T 0.19 tolerated(0.25) unknown(0) TCGA-D6-6516-01 5 90106814 90106814 G A GPR98 Missense_Mutation p.R5246Q 0.13 possibly_damaging(0.602) TCGA-D6-6516-01 5 90107097 90107097 G A GPR98 Silent p.Q5340Q 0.28 TCGA-D6-6516-01 5 9224870 9224870 G A SEMA5A Missense_Mutation p.P188S 0.21 tolerated(1) benign(0.203) TCGA-D6-6516-01 5 94860296 94860296 C T TTC37 Splice_Site p.X442_splice 0.17 TCGA-D6-6516-01 6 100841642 100841642 C T SIM1 Missense_Mutation p.D431N 0.32 tolerated(0.43) benign(0.169) TCGA-D6-6516-01 6 105198279 105198279 A G HACE1 Silent p.F760F 0.21 TCGA-D6-6516-01 6 105224670 105224670 G A HACE1 Silent p.L604L 0.23 TCGA-D6-6516-01 6 105563586 105563586 C T BVES Silent p.R311R 0.15 TCGA-D6-6516-01 6 105726198 105726198 A G PREP Missense_Mutation p.F652L 0.16 tolerated(0.87) benign(0.063) TCGA-D6-6516-01 6 107390290 107390290 G A BEND3 Missense_Mutation p.P702L 0.12 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 6 110422844 110422844 G A WASF1 Missense_Mutation p.T490I 0.21 tolerated(0.22) possibly_damaging(0.881) TCGA-D6-6516-01 6 117113255 117113255 A C GPRC6A 3'UTR 0.20 TCGA-D6-6516-01 6 117128036 117128036 G A GPRC6A Silent p.L278L 0.18 TCGA-D6-6516-01 6 117609777 117609777 C T ROS1 Missense_Mutation p.E2308K 0.22 tolerated_low_confidence(0.06) benign(0.017) TCGA-D6-6516-01 6 117718139 117718139 C T ROS1 Missense_Mutation p.D240N 0.20 tolerated(0.23) benign(0.424) TCGA-D6-6516-01 6 118475784 118475784 G A SLC35F1 Splice_Site p.X117_splice 0.17 TCGA-D6-6516-01 6 125232011 125232011 G A RP11-510H23.1 RNA 0.18 TCGA-D6-6516-01 6 12719057 12719057 C T PHACTR1 Silent p.F27F 0.44 TCGA-D6-6516-01 6 128134451 128134451 C T THEMIS Silent p.P445P 0.21 TCGA-D6-6516-01 6 128150863 128150863 C T THEMIS Missense_Mutation p.R156K 0.11 tolerated(0.09) benign(0.303) TCGA-D6-6516-01 6 128411004 128411004 G A PTPRK Silent p.F432F 0.20 TCGA-D6-6516-01 6 129634086 129634086 C T LAMA2 Silent p.F1085F 0.12 TCGA-D6-6516-01 6 129802480 129802480 G A LAMA2 Missense_Mutation p.E2549K 0.21 deleterious(0.01) possibly_damaging(0.786) TCGA-D6-6516-01 6 131211548 131211548 G A EPB41L2 Missense_Mutation p.R516C 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-D6-6516-01 6 132029995 132029995 G A CTAGE9 Silent p.F721F 0.20 TCGA-D6-6516-01 6 133014449 133014449 G A VNN1 Silent p.N180N 0.18 TCGA-D6-6516-01 6 135811762 135811762 G A AHI1 Missense_Mutation p.S45L 0.17 tolerated(0.24) benign(0.154) TCGA-D6-6516-01 6 138202171 138202171 G A TNFAIP3 Splice_Site p.X697_splice 0.21 TCGA-D6-6516-01 6 142409721 142409721 C T NMBR Nonsense_Mutation p.W25* 0.24 TCGA-D6-6516-01 6 144262941 144262941 C T PLAGL1 Missense_Mutation p.E338K 0.47 tolerated(0.09) possibly_damaging(0.733) TCGA-D6-6516-01 6 146755382 146755382 G A GRM1 Missense_Mutation p.G1012D 0.19 tolerated_low_confidence(0.63) benign(0) TCGA-D6-6516-01 6 147635423 147635423 T A STXBP5 Missense_Mutation p.N439K 0.23 tolerated(0.2) benign(0.003) TCGA-D6-6516-01 6 150164231 150164231 G A LRP11 Silent p.S267S 0.26 TCGA-D6-6516-01 6 150267511 150267511 C T ULBP2 Missense_Mutation p.P118L 0.13 deleterious(0.01) possibly_damaging(0.67) TCGA-D6-6516-01 6 150267512 150267512 C T ULBP2 Silent p.P118P 0.13 TCGA-D6-6516-01 6 151130814 151130814 G A PLEKHG1 Missense_Mutation p.V408I 0.19 tolerated(1) benign(0.003) TCGA-D6-6516-01 6 151151947 151151947 C T PLEKHG1 Missense_Mutation p.S567F 0.32 deleterious(0) probably_damaging(0.99) TCGA-D6-6516-01 6 151779649 151779649 C T C6orf211 Missense_Mutation p.P112S 0.44 tolerated(0.22) benign(0.431) TCGA-D6-6516-01 6 155486520 155486520 G A TIAM2 Missense_Mutation p.E780K 0.21 tolerated(0.44) benign(0.027) TCGA-D6-6516-01 6 155618126 155618126 T C TFB1M Silent p.R169R 0.35 TCGA-D6-6516-01 6 158538839 158538839 T C SERAC1 Silent p.K441K 0.20 TCGA-D6-6516-01 6 158922890 158922890 G C TULP4 Missense_Mutation p.G732A 0.18 tolerated_low_confidence(0.46) benign(0.015) TCGA-D6-6516-01 6 159184341 159184341 T A SYTL3 Missense_Mutation p.L508H 0.12 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 6 160679479 160679479 A C SLC22A2 Missense_Mutation p.V104G 0.20 tolerated(0.18) benign(0.013) TCGA-D6-6516-01 6 161071470 161071470 G A LPA Nonsense_Mutation p.R37* 0.19 TCGA-D6-6516-01 6 167755201 167755201 G A TTLL2 3'UTR 0.22 TCGA-D6-6516-01 6 169053673 169053673 G A SMOC2 Silent p.R361R 0.34 TCGA-D6-6516-01 6 170088966 170088966 G A WDR27 Missense_Mutation p.P46S 0.16 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 6 170595353 170595353 C T DLL1 Missense_Mutation p.G235E 0.21 deleterious(0) probably_damaging(0.992) TCGA-D6-6516-01 6 17675207 17675207 G A NUP153 Missense_Mutation p.P261S 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-D6-6516-01 6 18121620 18121620 C T NHLRC1 3'UTR 0.23 TCGA-D6-6516-01 6 20109910 20109910 C A MBOAT1 Missense_Mutation p.W427L 0.19 deleterious(0.02) probably_damaging(1) TCGA-D6-6516-01 6 24547366 24547366 C T KIAA0319 3'UTR 0.19 TCGA-D6-6516-01 6 24596343 24596343 G A KIAA0319 Silent p.L187L 0.19 TCGA-D6-6516-01 6 24781768 24781768 C T GMNN Missense_Mutation p.P65S 0.21 tolerated(1) benign(0.001) TCGA-D6-6516-01 6 24843658 24843658 G A FAM65B Missense_Mutation p.P451L 0.15 tolerated(0.13) benign(0.004) TCGA-D6-6516-01 6 24843659 24843659 G A FAM65B Missense_Mutation p.P451S 0.15 tolerated(0.32) benign(0.003) TCGA-D6-6516-01 6 25551232 25551232 C T LRRC16A Missense_Mutation p.T808I 0.38 deleterious(0.02) benign(0.005) TCGA-D6-6516-01 6 25551233 25551233 C T LRRC16A Silent p.T808T 0.39 TCGA-D6-6516-01 6 25850331 25850331 G A SLC17A3 Silent p.F356F 0.17 TCGA-D6-6516-01 6 26017611 26017611 A G HIST1H1A Missense_Mutation p.V117A 0.15 tolerated(0.75) benign(0.003) TCGA-D6-6516-01 6 26045858 26045858 G A HIST1H3C Missense_Mutation p.E74K 0.43 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-D6-6516-01 6 26197348 26197348 G A HIST1H3D Missense_Mutation p.P44L 0.12 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D6-6516-01 6 27860564 27860564 C T HIST1H2AM Missense_Mutation p.E122K 0.20 tolerated_low_confidence(0.2) benign(0.101) TCGA-D6-6516-01 6 28543596 28543596 C T SCAND3 Missense_Mutation p.D296N 0.15 tolerated_low_confidence(0.29) benign(0.001) TCGA-D6-6516-01 6 29454573 29454573 G A MAS1L Silent p.P369P 0.19 TCGA-D6-6516-01 6 29454574 29454574 G A MAS1L Missense_Mutation p.P369L 0.19 deleterious_low_confidence(0.02) benign(0.001) TCGA-D6-6516-01 6 29556101 29556101 C T OR2H2 Missense_Mutation p.P127L 0.12 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 6 29556102 29556102 C T OR2H2 Silent p.P127P 0.13 TCGA-D6-6516-01 6 30310133 30310133 C T TRIM39 3'UTR 0.31 TCGA-D6-6516-01 6 30554047 30554047 C T ABCF1 Missense_Mutation p.P617L 0.17 deleterious(0.01) benign(0.127) TCGA-D6-6516-01 6 30627339 30627339 G A DHX16 Silent p.I639I 0.35 TCGA-D6-6516-01 6 30862381 30862381 C T DDR1 Silent p.P482P 0.34 TCGA-D6-6516-01 6 31079247 31079247 G A C6orf15 Missense_Mutation p.P297S 0.25 deleterious(0.02) probably_damaging(0.932) TCGA-D6-6516-01 6 31324148 31324148 G A HLA-B Nonsense_Mutation p.Q139* 0.25 TCGA-D6-6516-01 6 31829148 31829148 G A NEU1 Silent p.S144S 0.24 TCGA-D6-6516-01 6 31864272 31864272 G A EHMT2 Missense_Mutation p.P117L 0.17 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D6-6516-01 6 31913981 31913981 C T CFB 5'UTR 0.16 TCGA-D6-6516-01 6 31919771 31919771 G A CFB Silent p.K1255K 0.15 TCGA-D6-6516-01 6 32008972 32008972 C T CYP21A2 3'UTR 0.13 TCGA-D6-6516-01 6 32021380 32021380 G A TNXB Missense_Mutation p.S2857F 0.50 possibly_damaging(0.683) TCGA-D6-6516-01 6 32024532 32024532 G A TNXB Silent p.F2658F 0.37 TCGA-D6-6516-01 6 32191733 32191733 C T NOTCH4 5'UTR 0.17 TCGA-D6-6516-01 6 32191734 32191734 C T NOTCH4 5'UTR 0.17 TCGA-D6-6516-01 6 3224954 3224954 C T TUBB2B 3'UTR 0.22 TCGA-D6-6516-01 6 3225655 3225655 C T TUBB2B Missense_Mutation p.G223E 0.36 deleterious_low_confidence(0.01) probably_damaging(0.918) TCGA-D6-6516-01 6 3225656 3225656 C T TUBB2B Missense_Mutation p.G223R 0.36 deleterious_low_confidence(0.05) probably_damaging(0.947) TCGA-D6-6516-01 6 33156965 33156965 C T COL11A2 Missense_Mutation p.G78E 0.22 probably_damaging(0.999) TCGA-D6-6516-01 6 33232176 33232176 C T VPS52 Missense_Mutation p.G500E 0.11 tolerated(0.05) possibly_damaging(0.601) TCGA-D6-6516-01 6 33261697 33261697 G A RGL2 Intron 0.18 TCGA-D6-6516-01 6 33283298 33283298 C A ZBTB22 Missense_Mutation p.V466L 0.15 tolerated(0.19) benign(0.007) TCGA-D6-6516-01 6 33283441 33283441 G A ZBTB22 Missense_Mutation p.P418L 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-D6-6516-01 6 33284361 33284361 G A ZBTB22 Silent p.S111S 0.27 TCGA-D6-6516-01 6 33391298 33391298 C T SYNGAP1 Missense_Mutation p.P38S 0.18 tolerated(0.08) benign(0.066) TCGA-D6-6516-01 6 33659606 33659606 G A ITPR3 Silent p.R2453R 0.22 TCGA-D6-6516-01 6 33693272 33693272 C T IP6K3 Silent p.R237R 0.15 TCGA-D6-6516-01 6 34497235 34497235 G A PACSIN1 Missense_Mutation p.R173Q 0.15 tolerated(0.35) benign(0.164) TCGA-D6-6516-01 6 35706178 35706178 G A ARMC12 Silent p.T136T 0.22 TCGA-D6-6516-01 6 36181743 36181743 C T BRPF3 Missense_Mutation p.P857S 0.24 deleterious(0.03) possibly_damaging(0.826) TCGA-D6-6516-01 6 36275453 36275453 G A PNPLA1 Missense_Mutation p.R520K 0.16 tolerated_low_confidence(0.08) benign(0.063) TCGA-D6-6516-01 6 36982748 36982748 C T FGD2 Silent p.L321L 0.14 TCGA-D6-6516-01 6 38790671 38790671 C T DNAH8 Missense_Mutation p.A977V 0.10 benign(0.014) TCGA-D6-6516-01 6 39047475 39047475 C T GLP1R Silent p.F393F 0.22 TCGA-D6-6516-01 6 39869086 39869086 G T DAAM2 Missense_Mutation p.K940N 0.22 deleterious(0) benign(0.246) TCGA-D6-6516-01 6 42689888 42689888 T C PRPH2 Missense_Mutation p.N62S 0.24 deleterious(0.01) possibly_damaging(0.729) TCGA-D6-6516-01 6 42890854 42890854 C T PTCRA Missense_Mutation p.L50F 0.32 tolerated(0.14) benign(0.353) TCGA-D6-6516-01 6 43406424 43406424 C T ABCC10 Missense_Mutation p.P673L 0.48 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 6 43475211 43475211 G A LRRC73 Missense_Mutation p.S288F 0.10 deleterious_low_confidence(0.02) benign(0.058) TCGA-D6-6516-01 6 44273502 44273502 G C AARS2 Nonsense_Mutation p.S441* 0.18 TCGA-D6-6516-01 6 44320587 44320587 C G SPATS1 Silent p.L88L 0.14 TCGA-D6-6516-01 6 46191013 46191013 C T RCAN2 Silent p.G199G 0.20 TCGA-D6-6516-01 6 46993686 46993686 C T GPR110 Missense_Mutation p.E61K 0.21 tolerated(0.29) benign(0.016) TCGA-D6-6516-01 6 47253704 47253704 G A TNFRSF21 Missense_Mutation p.P242S 0.10 tolerated(0.21) benign(0.006) TCGA-D6-6516-01 6 49460013 49460013 C T CENPQ 3'UTR 0.42 TCGA-D6-6516-01 6 51944732 51944732 G A PKHD1 Missense_Mutation p.P119L 0.16 tolerated(0.91) benign(0.001) TCGA-D6-6516-01 6 51947307 51947307 C T PKHD1 Missense_Mutation p.G55D 0.15 deleterious(0.01) probably_damaging(0.974) TCGA-D6-6516-01 6 52701147 52701147 C T GSTA5 Silent p.Q53Q 0.22 TCGA-D6-6516-01 6 52878665 52878665 T A ICK Missense_Mutation p.Y316F 0.27 tolerated(0.7) benign(0.032) TCGA-D6-6516-01 6 55381343 55381343 G A HMGCLL1 Missense_Mutation p.P149L 0.42 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 6 56033060 56033060 G A COL21A1 Silent p.L354L 0.20 TCGA-D6-6516-01 6 56457058 56457058 C T DST Silent p.E1652E 0.11 TCGA-D6-6516-01 6 56468429 56468429 G A DST Intron 0.37 TCGA-D6-6516-01 6 56504804 56504804 G A DST Missense_Mutation p.H311Y 0.20 probably_damaging(0.956) TCGA-D6-6516-01 6 57398275 57398275 C T PRIM2 Silent p.F326F 0.10 TCGA-D6-6516-01 6 6589096 6589096 G A LY86 Silent p.Q43Q 0.21 TCGA-D6-6516-01 6 70881893 70881893 G A COL19A1 Missense_Mutation p.G869E 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 6 72961047 72961047 G A RIMS1 Missense_Mutation p.E892K 0.40 deleterious(0) benign(0.41) TCGA-D6-6516-01 6 74063936 74063936 G A DPPA5 Missense_Mutation p.P5S 0.11 deleterious(0.01) benign(0.202) TCGA-D6-6516-01 6 74228094 74228094 C T EEF1A1 Missense_Mutation p.A338T 0.19 tolerated_low_confidence(0.09) benign(0.267) TCGA-D6-6516-01 6 75892813 75892813 G A COL12A1 Missense_Mutation p.S615F 0.23 probably_damaging(0.999) TCGA-D6-6516-01 6 76023594 76023594 C T FILIP1 Missense_Mutation p.D652N 0.20 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 6 76744039 76744039 G A IMPG1 Missense_Mutation p.P164S 0.25 tolerated(0.21) benign(0.025) TCGA-D6-6516-01 6 76744040 76744040 G A IMPG1 Silent p.F163F 0.25 TCGA-D6-6516-01 6 76744384 76744384 C T IMPG1 Missense_Mutation p.G141E 0.21 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 6 83075562 83075562 C T TPBG Missense_Mutation p.P295L 0.16 deleterious(0) probably_damaging(0.973) TCGA-D6-6516-01 6 83848374 83848374 G C DOPEY1 Missense_Mutation p.S1538T 0.20 tolerated(0.96) benign(0.056) TCGA-D6-6516-01 6 84765138 84765138 C T MRAP2 Missense_Mutation p.S34F 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-D6-6516-01 6 87968650 87968650 C T ZNF292 Missense_Mutation p.S1768F 0.33 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-D6-6516-01 6 90380682 90380682 G A MDN1 Silent p.L4638L 0.23 TCGA-D6-6516-01 6 90398396 90398396 G A MDN1 Missense_Mutation p.P3719S 0.45 possibly_damaging(0.71) TCGA-D6-6516-01 6 90577717 90577717 C T CASP8AP2 RNA 0.22 TCGA-D6-6516-01 6 90604338 90604338 G A GJA10 Missense_Mutation p.A51T 0.23 tolerated(0.08) possibly_damaging(0.686) TCGA-D6-6516-01 6 97681814 97681814 A C MMS22L Missense_Mutation p.C409G 0.22 deleterious(0) probably_damaging(0.994) TCGA-D6-6516-01 7 100033362 100033362 G A PPP1R35 Silent p.L160L 0.30 TCGA-D6-6516-01 7 100189332 100189332 G A FBXO24 Missense_Mutation p.R160Q 0.13 deleterious_low_confidence(0.03) benign(0.238) TCGA-D6-6516-01 7 100212823 100212823 C T MOSPD3 3'UTR 0.29 TCGA-D6-6516-01 7 100350374 100350374 G A ZAN Silent p.T882T 0.21 TCGA-D6-6516-01 7 100350375 100350375 G A ZAN Missense_Mutation p.E883K 0.21 unknown(0) TCGA-D6-6516-01 7 100677450 100677450 C T MUC17 Missense_Mutation p.T918I 0.06 unknown(0) TCGA-D6-6516-01 7 100677989 100677989 G A MUC17 Missense_Mutation p.E1098K 0.09 possibly_damaging(0.78) TCGA-D6-6516-01 7 100680999 100680999 G A MUC17 Missense_Mutation p.S2101N 0.14 unknown(0) TCGA-D6-6516-01 7 1008841 1008841 G A COX19 3'UTR 0.32 TCGA-D6-6516-01 7 1008842 1008842 G A COX19 3'UTR 0.32 TCGA-D6-6516-01 7 101891804 101891804 G A CUX1 Missense_Mutation p.E1345K 0.21 deleterious(0.01) unknown(0) TCGA-D6-6516-01 7 102137351 102137351 G A RASA4B Silent p.S266S 0.29 TCGA-D6-6516-01 7 104377334 104377334 G A LHFPL3 Missense_Mutation p.E220K 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-D6-6516-01 7 106508905 106508905 G A PIK3CG Missense_Mutation p.G300E 0.18 tolerated(0.34) possibly_damaging(0.837) TCGA-D6-6516-01 7 106924058 106924058 G A COG5 Missense_Mutation p.P509L 0.13 deleterious(0) possibly_damaging(0.858) TCGA-D6-6516-01 7 106924059 106924059 G A COG5 Missense_Mutation p.P509S 0.14 deleterious(0) probably_damaging(0.967) TCGA-D6-6516-01 7 107531645 107531645 G A DLD 5'UTR 0.39 TCGA-D6-6516-01 7 107603364 107603364 G A LAMB1 Missense_Mutation p.R615C 0.15 deleterious(0) benign(0.052) TCGA-D6-6516-01 7 107836218 107836218 G A NRCAM Missense_Mutation p.P484S 0.14 deleterious(0.04) probably_damaging(1) TCGA-D6-6516-01 7 112108061 112108061 C T IFRD1 Missense_Mutation p.S311F 0.11 tolerated(0.2) benign(0.446) TCGA-D6-6516-01 7 114284804 114284804 G A FOXP2 Missense_Mutation p.G377S 0.20 deleterious(0.02) unknown(0) TCGA-D6-6516-01 7 114284805 114284805 G A FOXP2 Missense_Mutation p.G377D 0.20 deleterious(0) unknown(0) TCGA-D6-6516-01 7 11446682 11446682 C T THSD7A Missense_Mutation p.G1306E 0.10 deleterious(0) probably_damaging(0.98) TCGA-D6-6516-01 7 11446683 11446683 C T THSD7A Splice_Site p.X1306_splice 0.10 TCGA-D6-6516-01 7 11582619 11582619 C T THSD7A Missense_Mutation p.E527K 0.32 deleterious(0) possibly_damaging(0.876) TCGA-D6-6516-01 7 116759690 116759690 C T ST7 Missense_Mutation p.L104F 0.14 tolerated(0.13) benign(0.094) TCGA-D6-6516-01 7 116863075 116863075 C T ST7 3'UTR 0.19 TCGA-D6-6516-01 7 120373073 120373073 G T KCND2 Missense_Mutation p.R411L 0.28 deleterious(0) probably_damaging(0.96) TCGA-D6-6516-01 7 120608018 120608018 C T ING3 Missense_Mutation p.S196F 0.09 deleterious(0.01) benign(0.259) TCGA-D6-6516-01 7 120782185 120782185 G A CPED1 Missense_Mutation p.G682D 0.31 deleterious(0.02) probably_damaging(0.976) TCGA-D6-6516-01 7 121695040 121695041 - AT PTPRZ1 Frame_Shift_Ins p.C2144Ifs*24 0.24 TCGA-D6-6516-01 7 123302483 123302483 G A LMOD2 Silent p.T281T 0.42 TCGA-D6-6516-01 7 126086395 126086395 G A GRM8 Missense_Mutation p.S821F 0.21 deleterious(0) probably_damaging(0.985) TCGA-D6-6516-01 7 126410011 126410011 T A GRM8 Missense_Mutation p.D422V 0.24 deleterious(0.02) benign(0.325) TCGA-D6-6516-01 7 126410053 126410053 G A GRM8 Missense_Mutation p.A408V 0.25 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 7 1275522 1275522 G A UNCX Missense_Mutation p.G169S 0.24 deleterious(0.01) possibly_damaging(0.791) TCGA-D6-6516-01 7 1275523 1275523 G A UNCX Missense_Mutation p.G169D 0.25 deleterious(0) probably_damaging(0.989) TCGA-D6-6516-01 7 128446882 128446882 G A CCDC136 Silent p.T463T 0.32 TCGA-D6-6516-01 7 128480173 128480173 G A FLNC Missense_Mutation p.G503D 0.35 tolerated(0.09) probably_damaging(0.981) TCGA-D6-6516-01 7 128582178 128582178 G A IRF5 Missense_Mutation p.V15M 0.17 deleterious(0.02) possibly_damaging(0.535) TCGA-D6-6516-01 7 130144989 130144989 C A MEST 3'UTR 0.19 TCGA-D6-6516-01 7 130144990 130144990 C A MEST 3'UTR 0.19 TCGA-D6-6516-01 7 131190752 131190752 C T PODXL Missense_Mutation p.E452K 0.13 deleterious(0.05) probably_damaging(1) TCGA-D6-6516-01 7 131196154 131196154 G A PODXL Missense_Mutation p.P47S 0.21 tolerated_low_confidence(0.57) benign(0) TCGA-D6-6516-01 7 131866195 131866195 G T PLXNA4 Missense_Mutation p.A1146D 0.33 tolerated(0.23) benign(0.112) TCGA-D6-6516-01 7 133812343 133812343 G A LRGUK Missense_Mutation p.D75N 0.13 deleterious_low_confidence(0.02) benign(0.42) TCGA-D6-6516-01 7 135123021 135123021 G A CNOT4 Missense_Mutation p.P20L 0.32 tolerated(0.1) benign(0.316) TCGA-D6-6516-01 7 135292093 135292093 C T NUP205 Missense_Mutation p.P1057S 0.17 tolerated(0.09) probably_damaging(1) TCGA-D6-6516-01 7 137154314 137154314 G C DGKI Missense_Mutation p.R827G 0.31 tolerated(0.06) benign(0.097) TCGA-D6-6516-01 7 14216379 14216379 G A DGKB Intron 0.14 TCGA-D6-6516-01 7 142180968 142180968 G A TRBV6-5 5'UTR 0.18 TCGA-D6-6516-01 7 142570156 142570156 C T TRPV6 Missense_Mutation p.E622K 0.17 tolerated(0.57) benign(0.007) TCGA-D6-6516-01 7 142574508 142574508 C T TRPV6 Silent p.R190R 0.29 TCGA-D6-6516-01 7 142749631 142749631 C T OR6V1 Missense_Mutation p.S65F 0.37 deleterious(0) probably_damaging(0.995) TCGA-D6-6516-01 7 143053832 143053832 C T FAM131B Silent p.R298R 0.18 TCGA-D6-6516-01 7 143085984 143085984 C T ZYX Missense_Mutation p.T480I 0.12 tolerated(0.92) probably_damaging(0.926) TCGA-D6-6516-01 7 143140716 143140716 G A TAS2R60 Silent p.K57K 0.34 TCGA-D6-6516-01 7 143141134 143141134 C T TAS2R60 Silent p.L197L 0.29 TCGA-D6-6516-01 7 143573412 143573412 G A FAM115A Missense_Mutation p.S97F 0.19 deleterious(0) possibly_damaging(0.627) TCGA-D6-6516-01 7 143956187 143956187 C T OR2A7 Missense_Mutation p.E179K 0.13 deleterious(0) possibly_damaging(0.533) TCGA-D6-6516-01 7 146825806 146825806 T A CNTNAP2 Missense_Mutation p.F321I 0.16 tolerated(0.31) benign(0.002) TCGA-D6-6516-01 7 148112610 148112610 G A CNTNAP2 Missense_Mutation p.G1300R 0.16 tolerated(0.54) benign(0.022) TCGA-D6-6516-01 7 148909480 148909480 C T ZNF282 Missense_Mutation p.S328F 0.30 deleterious(0) possibly_damaging(0.89) TCGA-D6-6516-01 7 149477972 149477972 C T SSPO RNA 0.13 TCGA-D6-6516-01 7 149494381 149494381 C T SSPO RNA 0.10 TCGA-D6-6516-01 7 149986643 149986643 G A ACTR3C Missense_Mutation p.P65S 0.17 deleterious(0.01) probably_damaging(0.939) TCGA-D6-6516-01 7 150028235 150028235 C T ZBED6CL 3'UTR 0.21 TCGA-D6-6516-01 7 150028236 150028236 C T ZBED6CL 3'UTR 0.22 TCGA-D6-6516-01 7 150554746 150554746 C T AOC1 Silent p.T396T 0.14 TCGA-D6-6516-01 7 150654554 150654554 G A KCNH2 Missense_Mutation p.S318F 0.17 deleterious(0) probably_damaging(0.947) TCGA-D6-6516-01 7 150774982 150774982 G A FASTK Silent p.F341F 0.12 TCGA-D6-6516-01 7 150930993 150930993 G A CHPF2 5'UTR 0.19 TCGA-D6-6516-01 7 150934782 150934782 C T CHPF2 Missense_Mutation p.T445I 0.17 tolerated(0.17) benign(0.027) TCGA-D6-6516-01 7 150934783 150934783 C T CHPF2 Silent p.T445T 0.16 TCGA-D6-6516-01 7 151093194 151093194 C T WDR86 Missense_Mutation p.E132K 0.18 tolerated(0.07) possibly_damaging(0.814) TCGA-D6-6516-01 7 151874263 151874263 A C KMT2C Missense_Mutation p.Y2759D 0.37 probably_damaging(0.999) TCGA-D6-6516-01 7 154598806 154598806 C T DPP6 Silent p.F550F 0.18 TCGA-D6-6516-01 7 158672676 158672676 C T WDR60 Missense_Mutation p.S292F 0.14 tolerated(0.71) possibly_damaging(0.799) TCGA-D6-6516-01 7 18688107 18688107 C T HDAC9 Missense_Mutation p.P423L 0.12 tolerated(0.79) probably_damaging(0.962) TCGA-D6-6516-01 7 20685402 20685402 G A ABCB5 Silent p.K234K 0.17 TCGA-D6-6516-01 7 21627720 21627720 T G DNAH11 Silent p.V583V 0.14 TCGA-D6-6516-01 7 21639524 21639524 C T DNAH11 Silent p.F929F 0.15 TCGA-D6-6516-01 7 21744165 21744165 G A DNAH11 Silent p.R2136R 0.11 TCGA-D6-6516-01 7 23391088 23391088 C T IGF2BP3 Silent p.G173G 0.22 TCGA-D6-6516-01 7 25268016 25268016 C A NPVF Missense_Mutation p.A15S 0.19 tolerated(0.06) probably_damaging(0.923) TCGA-D6-6516-01 7 2559921 2559921 G A LFNG Silent p.K142K 0.21 TCGA-D6-6516-01 7 2645612 2645612 C T IQCE Silent p.L616L 0.07 TCGA-D6-6516-01 7 27148004 27148004 G A HOXA3 Missense_Mutation p.P288S 0.17 tolerated(0.97) benign(0.047) TCGA-D6-6516-01 7 29544359 29544359 G A CHN2 Splice_Site p.X305_splice 0.15 TCGA-D6-6516-01 7 30066080 30066080 A T FKBP14 Silent p.T15T 0.32 TCGA-D6-6516-01 7 30491316 30491316 G A NOD1 Missense_Mutation p.P573S 0.17 tolerated(0.8) benign(0.05) TCGA-D6-6516-01 7 33039805 33039805 G A FKBP9 Silent p.E435E 0.14 TCGA-D6-6516-01 7 33376101 33376101 G A BBS9 Silent p.Q355Q 0.23 TCGA-D6-6516-01 7 36580098 36580098 C T AOAH Splice_Site p.X378_splice 0.17 TCGA-D6-6516-01 7 37907425 37907425 C T NME8 Missense_Mutation p.P248L 0.27 tolerated(0.26) benign(0.013) TCGA-D6-6516-01 7 37927979 37927979 C T NME8 Missense_Mutation p.L450F 0.11 tolerated(0.62) benign(0.051) TCGA-D6-6516-01 7 37947224 37947224 C T SFRP4 Missense_Mutation p.D300N 0.18 tolerated_low_confidence(0.46) benign(0.002) TCGA-D6-6516-01 7 39046424 39046424 T C POU6F2 5'UTR 0.19 TCGA-D6-6516-01 7 40027827 40027827 C T CDK13 Missense_Mutation p.P614L 0.19 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 7 40127730 40127730 C T CDK13 Missense_Mutation p.P1012L 0.22 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 7 4153028 4153028 C T SDK1 Missense_Mutation p.T1181M 0.11 deleterious(0.02) possibly_damaging(0.72) TCGA-D6-6516-01 7 4272892 4272892 G A SDK1 Missense_Mutation p.G1945S 0.42 tolerated(0.18) possibly_damaging(0.531) TCGA-D6-6516-01 7 43484379 43484379 C T HECW1 Silent p.S536S 0.11 TCGA-D6-6516-01 7 43484409 43484409 C T HECW1 Silent p.I546I 0.09 TCGA-D6-6516-01 7 43832321 43832321 C G BLVRA Missense_Mutation p.L88V 0.30 deleterious(0) probably_damaging(0.995) TCGA-D6-6516-01 7 44054274 44054274 G A SPDYE1 3'Flank 0.11 TCGA-D6-6516-01 7 44054304 44054304 G A SPDYE1 3'Flank 0.10 TCGA-D6-6516-01 7 44579040 44579040 G A NPC1L1 Missense_Mutation p.P319L 0.28 tolerated(0.08) benign(0.001) TCGA-D6-6516-01 7 44741144 44741144 A C OGDH Missense_Mutation p.L854F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 7 44804988 44804988 C T ZMIZ2 Silent p.P684P 0.27 TCGA-D6-6516-01 7 44805102 44805102 C T ZMIZ2 Silent p.A722A 0.28 TCGA-D6-6516-01 7 45004019 45004019 G A MYO1G Missense_Mutation p.R876C 0.23 deleterious(0.02) possibly_damaging(0.888) TCGA-D6-6516-01 7 45650062 45650062 C T ADCY1 Missense_Mutation p.H292Y 0.30 deleterious(0) possibly_damaging(0.745) TCGA-D6-6516-01 7 45743070 45743070 C T ADCY1 Silent p.L850L 0.12 TCGA-D6-6516-01 7 47323382 47323382 G A TNS3 Missense_Mutation p.T1337I 0.14 deleterious(0) probably_damaging(0.997) TCGA-D6-6516-01 7 47842808 47842808 C T PKD1L1 Silent p.G2654G 0.08 TCGA-D6-6516-01 7 48033956 48033956 G A SUN3 Missense_Mutation p.P273S 0.37 deleterious(0) probably_damaging(0.995) TCGA-D6-6516-01 7 48528921 48528921 C T ABCA13 Missense_Mutation p.T4424I 0.18 benign(0.173) TCGA-D6-6516-01 7 48619965 48619965 C T ABCA13 Missense_Mutation p.P4834S 0.24 benign(0.151) TCGA-D6-6516-01 7 4874565 4874565 G A RADIL Silent p.P363P 0.18 TCGA-D6-6516-01 7 4874566 4874566 G A RADIL Missense_Mutation p.P363L 0.18 tolerated(0.07) benign(0.004) TCGA-D6-6516-01 7 4901389 4901389 G A PAPOLB Missense_Mutation p.P17L 0.42 tolerated(0.14) possibly_damaging(0.487) TCGA-D6-6516-01 7 50605614 50605614 C T DDC Missense_Mutation p.E127K 0.24 tolerated(0.17) benign(0.001) TCGA-D6-6516-01 7 5087682 5087682 C T RBAK-RBAKDN 5'UTR 0.44 TCGA-D6-6516-01 7 5410575 5410575 G A TNRC18 Missense_Mutation p.S1217F 0.11 possibly_damaging(0.876) TCGA-D6-6516-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.46 TCGA-D6-6516-01 7 57188704 57188704 C T ZNF479 Missense_Mutation p.G140R 0.18 tolerated(0.38) benign(0.039) TCGA-D6-6516-01 7 6012989 6012989 A T PMS2 3'UTR 0.25 TCGA-D6-6516-01 7 6063300 6063300 C T AIMP2 Missense_Mutation p.T314M 0.15 tolerated(0.18) benign(0.025) TCGA-D6-6516-01 7 62752756 62752756 C T ZNF733P RNA 0.26 TCGA-D6-6516-01 7 71488753 71488753 C T CALN1 Silent p.G130G 0.11 TCGA-D6-6516-01 7 72722791 72722791 C T NSUN5 5'UTR 0.23 TCGA-D6-6516-01 7 72985181 72985181 G A TBL2 Missense_Mutation p.P334S 0.17 deleterious(0.05) benign(0.004) TCGA-D6-6516-01 7 73115191 73115191 G A STX1A Intron 0.30 TCGA-D6-6516-01 7 73604022 73604022 C T EIF4H Silent p.F89F 0.14 TCGA-D6-6516-01 7 74193715 74193715 C T NCF1 Silent p.L114L 0.11 TCGA-D6-6516-01 7 7516750 7516750 C T COL28A1 Missense_Mutation p.G409E 0.38 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 7 75203141 75203141 G A HIP1 Missense_Mutation p.P224S 0.34 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 7 75687336 75687336 C T MDH2 Silent p.T123T 0.16 TCGA-D6-6516-01 7 76019433 76019433 C T SRCRB4D Nonsense_Mutation p.W557* 0.09 TCGA-D6-6516-01 7 76019439 76019439 G A SRCRB4D Silent p.I555I 0.08 TCGA-D6-6516-01 7 76063399 76063399 T C ZP3 Missense_Mutation p.V253A 0.43 tolerated(0.59) benign(0.001) TCGA-D6-6516-01 7 76240831 76240831 C T POMZP3 Missense_Mutation p.R172K 0.40 tolerated_low_confidence(0.09) benign(0.235) TCGA-D6-6516-01 7 78636502 78636502 G A MAGI2 Missense_Mutation p.L108F 0.13 deleterious(0) possibly_damaging(0.864) TCGA-D6-6516-01 7 80088090 80088090 G A GNAT3 Missense_Mutation p.S321F 0.16 deleterious(0.02) probably_damaging(0.96) TCGA-D6-6516-01 7 81381476 81381476 C T HGF Silent p.E195E 0.32 TCGA-D6-6516-01 7 81381563 81381563 G A HGF Silent p.S166S 0.10 TCGA-D6-6516-01 7 8167554 8167554 G A ICA1 Missense_Mutation p.P427S 0.15 deleterious(0) probably_damaging(0.929) TCGA-D6-6516-01 7 82544738 82544738 C A PCLO Missense_Mutation p.Q4188H 0.32 unknown(0) TCGA-D6-6516-01 7 82544869 82544869 G T PCLO Missense_Mutation p.L4145I 0.17 unknown(0) TCGA-D6-6516-01 7 82545878 82545878 C T PCLO Silent p.R3808R 0.13 TCGA-D6-6516-01 7 82586136 82586136 G A PCLO Missense_Mutation p.P1378L 0.09 unknown(0) TCGA-D6-6516-01 7 83636728 83636728 C T SEMA3A Missense_Mutation p.G361R 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-D6-6516-01 7 86803936 86803936 C T DMTF1 Missense_Mutation p.S157F 0.32 deleterious(0) probably_damaging(0.973) TCGA-D6-6516-01 7 87459342 87459342 C T RUNDC3B Silent p.S473S 0.11 TCGA-D6-6516-01 7 88963669 88963669 C T ZNF804B Missense_Mutation p.P458L 0.12 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 7 89749105 89749105 C T RP5-1121E10.2 Intron 0.21 TCGA-D6-6516-01 7 91632538 91632538 A T AKAP9 Nonsense_Mutation p.K1103* 0.30 TCGA-D6-6516-01 7 91972502 91972502 C T ANKIB1 Missense_Mutation p.P318S 0.27 tolerated(0.15) possibly_damaging(0.656) TCGA-D6-6516-01 7 94034999 94034999 C T COL1A2 Silent p.F167F 0.14 TCGA-D6-6516-01 7 94898678 94898678 G A PPP1R9A Missense_Mutation p.E995K 0.18 tolerated(0.82) benign(0.007) TCGA-D6-6516-01 7 94919528 94919528 G A PPP1R9A Silent p.R1346R 0.13 TCGA-D6-6516-01 7 98257804 98257804 G A NPTX2 Missense_Mutation p.E387K 0.24 deleterious(0) possibly_damaging(0.72) TCGA-D6-6516-01 7 98501139 98501139 C T TRRAP Silent p.N345N 0.13 TCGA-D6-6516-01 7 99459380 99459380 G A CYP3A43 Missense_Mutation p.G391R 0.18 deleterious(0.01) possibly_damaging(0.896) TCGA-D6-6516-01 7 99696750 99696750 A G MCM7 Silent p.L160L 0.37 TCGA-D6-6516-01 7 99798352 99798352 C T GATS 3'UTR 0.26 TCGA-D6-6516-01 7 99998661 99998661 G A ZCWPW1 Silent p.F641F 0.14 TCGA-D6-6516-01 8 101174571 101174571 C T SPAG1 Silent p.P21P 0.17 TCGA-D6-6516-01 8 102570885 102570885 C T GRHL2 Missense_Mutation p.P175S 0.33 tolerated(0.43) benign(0.002) TCGA-D6-6516-01 8 103310705 103310705 C T UBR5 Silent p.G1113G 0.25 TCGA-D6-6516-01 8 10465958 10465958 G T RP1L1 Missense_Mutation p.Q1884K 0.15 unknown(0) TCGA-D6-6516-01 8 10466645 10466645 C T RP1L1 Missense_Mutation p.E1655K 0.14 unknown(0) TCGA-D6-6516-01 8 10470364 10470364 G A RP1L1 Missense_Mutation p.S415F 0.40 possibly_damaging(0.852) TCGA-D6-6516-01 8 104898359 104898359 C T RIMS2 Missense_Mutation p.S511L 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D6-6516-01 8 104940078 104940078 C T RIMS2 Silent p.S735S 0.26 TCGA-D6-6516-01 8 107782215 107782215 G A ABRA Silent p.P68P 0.34 TCGA-D6-6516-01 8 110131279 110131279 C T TRHR Silent p.V264V 0.31 TCGA-D6-6516-01 8 110416808 110416808 G A PKHD1L1 Missense_Mutation p.E467K 0.29 deleterious(0.05) benign(0.317) TCGA-D6-6516-01 8 110520013 110520013 G A PKHD1L1 Missense_Mutation p.E3706K 0.14 deleterious(0) probably_damaging(0.948) TCGA-D6-6516-01 8 11189365 11189365 C T SLC35G5 Silent p.L250L 0.08 TCGA-D6-6516-01 8 113299443 113299443 T C CSMD3 Missense_Mutation p.T3061A 0.13 tolerated(0.08) benign(0.026) TCGA-D6-6516-01 8 113697955 113697955 C A CSMD3 Missense_Mutation p.C721F 0.17 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 8 113697958 113697958 G A CSMD3 Missense_Mutation p.P720L 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-D6-6516-01 8 114326862 114326862 T C CSMD3 Silent p.E113E 0.33 TCGA-D6-6516-01 8 11667353 11667353 C T FDFT1 Silent p.F125F 0.19 TCGA-D6-6516-01 8 118542972 118542972 C T MED30 Missense_Mutation p.P116L 0.31 deleterious(0) probably_damaging(0.96) TCGA-D6-6516-01 8 119945375 119945375 G A TNFRSF11B Silent p.C65C 0.32 TCGA-D6-6516-01 8 120252438 120252438 T C MAL2 Missense_Mutation p.Y113H 0.32 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 8 120629462 120629462 G A ENPP2 Missense_Mutation p.P200L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D6-6516-01 8 121381580 121381580 G A COL14A1 Missense_Mutation p.E1723K 0.10 deleterious(0.01) possibly_damaging(0.524) TCGA-D6-6516-01 8 122626849 122626849 G A HAS2 Missense_Mutation p.P387S 0.10 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 8 125551344 125551344 C T TATDN1 5'Flank 0.20 TCGA-D6-6516-01 8 125551345 125551345 C T TATDN1 5'Flank 0.20 TCGA-D6-6516-01 8 126011730 126011730 C T SQLE Silent p.L29L 0.22 TCGA-D6-6516-01 8 131792678 131792678 A G ADCY8 Silent p.P1238P 0.43 TCGA-D6-6516-01 8 131797639 131797639 G A ADCY8 Missense_Mutation p.P1048L 0.13 deleterious(0) benign(0.396) TCGA-D6-6516-01 8 132982751 132982751 C T EFR3A Silent p.T340T 0.35 TCGA-D6-6516-01 8 132999915 132999915 G A EFR3A Silent p.E677E 0.28 TCGA-D6-6516-01 8 133899039 133899039 G A TG Silent p.G474G 0.13 TCGA-D6-6516-01 8 133984060 133984060 G A TG Silent p.R1999R 0.36 TCGA-D6-6516-01 8 134144090 134144090 G A TG Missense_Mutation p.G2633R 0.35 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 8 134147017 134147017 C T TG Silent p.G2762G 0.41 TCGA-D6-6516-01 8 139158208 139158208 C T FAM135B Silent p.K1178K 0.12 TCGA-D6-6516-01 8 139164563 139164563 G A FAM135B Nonsense_Mutation p.R719* 0.15 TCGA-D6-6516-01 8 139164907 139164907 G A FAM135B Missense_Mutation p.A604V 0.12 tolerated(0.17) benign(0.001) TCGA-D6-6516-01 8 139165102 139165102 C T FAM135B Missense_Mutation p.R539K 0.14 tolerated(0.49) benign(0.003) TCGA-D6-6516-01 8 139890021 139890021 C T COL22A1 Silent p.R210R 0.31 TCGA-D6-6516-01 8 142500263 142500263 G A MROH5 3'Flank 0.17 TCGA-D6-6516-01 8 142506435 142506435 C T MROH5 Missense_Mutation p.E48K 0.40 tolerated(0.16) probably_damaging(0.959) TCGA-D6-6516-01 8 143846001 143846001 G A LYNX1 3'UTR 0.31 TCGA-D6-6516-01 8 144808904 144808904 G A FAM83H Silent p.P909P 0.22 TCGA-D6-6516-01 8 144940361 144940361 C T EPPK1 Missense_Mutation p.S2354N 0.04 benign(0.015) TCGA-D6-6516-01 8 144941347 144941347 G A EPPK1 Silent p.L2025L 0.11 TCGA-D6-6516-01 8 144999724 144999724 C T PLEC Missense_Mutation p.R1595H 0.36 unknown(0) TCGA-D6-6516-01 8 145001818 145001818 C T PLEC Silent p.V1309V 0.50 TCGA-D6-6516-01 8 145735387 145735387 C T MFSD3 Missense_Mutation p.T224I 0.26 tolerated(0.61) benign(0.022) TCGA-D6-6516-01 8 146171451 146171451 G A ZNF16 Missense_Mutation p.P48S 0.07 tolerated_low_confidence(0.18) benign(0.004) TCGA-D6-6516-01 8 16026297 16026297 T A MSR1 Missense_Mutation p.K100N 0.14 deleterious(0.02) possibly_damaging(0.467) TCGA-D6-6516-01 8 17053076 17053076 G A ZDHHC2 Missense_Mutation p.E106K 0.17 deleterious(0.01) possibly_damaging(0.596) TCGA-D6-6516-01 8 17434709 17434709 C T PDGFRL 5'UTR 0.32 TCGA-D6-6516-01 8 2021531 2021531 C T MYOM2 Silent p.I357I 0.40 TCGA-D6-6516-01 8 21562583 21562583 G A GFRA2 Missense_Mutation p.S320F 0.18 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 8 21965715 21965715 G A NUDT18 Missense_Mutation p.P102L 0.15 deleterious(0) possibly_damaging(0.58) TCGA-D6-6516-01 8 22262322 22262322 G A SLC39A14 Silent p.L33L 0.18 TCGA-D6-6516-01 8 24324313 24324313 G A ADAM7 Missense_Mutation p.G131R 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 8 24350689 24350689 G A ADAM7 Missense_Mutation p.D597N 0.33 tolerated(1) benign(0.003) TCGA-D6-6516-01 8 27516190 27516190 C T SCARA3 Missense_Mutation p.S168F 0.14 deleterious(0.02) possibly_damaging(0.548) TCGA-D6-6516-01 8 2830813 2830813 G A CSMD1 Missense_Mutation p.P2917S 0.35 benign(0.053) TCGA-D6-6516-01 8 28574958 28574958 C T EXTL3 Missense_Mutation p.P461L 0.30 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 8 3019763 3019763 G A CSMD1 Missense_Mutation p.P1921L 0.50 probably_damaging(0.968) TCGA-D6-6516-01 8 3165294 3165294 G A CSMD1 Silent p.S1291S 0.15 TCGA-D6-6516-01 8 35583804 35583804 G A UNC5D Missense_Mutation p.D480N 0.18 tolerated(0.96) possibly_damaging(0.816) TCGA-D6-6516-01 8 36644890 36644890 C T KCNU1 Missense_Mutation p.R88C 0.29 deleterious(0) possibly_damaging(0.871) TCGA-D6-6516-01 8 39142387 39142387 C T ADAM32 3'UTR 0.30 TCGA-D6-6516-01 8 41164271 41164271 T A SFRP1 Intron 0.12 TCGA-D6-6516-01 8 41798814 41798814 G A KAT6A Missense_Mutation p.P862L 0.15 possibly_damaging(0.476) TCGA-D6-6516-01 8 42038041 42038041 C T PLAT Nonsense_Mutation p.W351* 0.20 TCGA-D6-6516-01 8 42234519 42234519 G A DKK4 Silent p.P15P 0.06 TCGA-D6-6516-01 8 42585737 42585737 G A CHRNB3 Missense_Mutation p.E84K 0.38 tolerated(0.3) probably_damaging(1) TCGA-D6-6516-01 8 49832560 49832560 G A SNAI2 Silent p.L174L 0.16 TCGA-D6-6516-01 8 56436807 56436807 C T XKR4 3'UTR 0.10 TCGA-D6-6516-01 8 59492285 59492285 G T SDCBP Missense_Mutation p.A228S 0.38 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 8 61121414 61121414 C T CA8 Missense_Mutation p.G268E 0.36 deleterious(0.03) probably_damaging(1) TCGA-D6-6516-01 8 62475388 62475388 G A ASPH Missense_Mutation p.P451L 0.19 deleterious(0) probably_damaging(0.963) TCGA-D6-6516-01 8 65528305 65528305 G A CYP7B1 Nonsense_Mutation p.Q265* 0.18 TCGA-D6-6516-01 8 67040642 67040642 G A TRIM55 Missense_Mutation p.G91E 0.14 deleterious(0) possibly_damaging(0.842) TCGA-D6-6516-01 8 69031678 69031678 C T PREX2 Missense_Mutation p.P1145S 0.17 deleterious(0) benign(0.162) TCGA-D6-6516-01 8 69633671 69633671 C T C8orf34 Missense_Mutation p.P468L 0.12 deleterious(0.05) benign(0.004) TCGA-D6-6516-01 8 70970904 70970904 G A PRDM14 Missense_Mutation p.H453Y 0.29 deleterious(0) possibly_damaging(0.782) TCGA-D6-6516-01 8 74529566 74529566 T A STAU2 Missense_Mutation p.Q177H 0.33 tolerated(0.11) benign(0.025) TCGA-D6-6516-01 8 77764288 77764288 C T ZFHX4 Missense_Mutation p.P1711S 0.19 possibly_damaging(0.803) TCGA-D6-6516-01 8 77766126 77766126 G A ZFHX4 Silent p.R2323R 0.27 TCGA-D6-6516-01 8 81733814 81733814 G A ZNF704 Nonsense_Mutation p.Q6* 0.29 TCGA-D6-6516-01 8 8235533 8235533 G A SGK223 Missense_Mutation p.P129L 0.24 benign(0.206) TCGA-D6-6516-01 8 86114445 86114445 G A E2F5 Missense_Mutation p.G100R 0.08 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 8 87638235 87638235 G T CNGB3 Silent p.I518I 0.17 TCGA-D6-6516-01 8 88885084 88885084 G A DCAF4L2 Silent p.L372L 0.33 TCGA-D6-6516-01 8 89179964 89179964 C T MMP16 Missense_Mutation p.G215R 0.18 deleterious(0.04) probably_damaging(0.989) TCGA-D6-6516-01 8 8998678 8998678 T A PPP1R3B Missense_Mutation p.I162L 0.39 tolerated(0.33) benign(0.012) TCGA-D6-6516-01 8 93017303 93017303 G A RUNX1T1 Intron 0.13 TCGA-D6-6516-01 8 95262787 95262787 G A GEM Silent p.D214D 0.35 TCGA-D6-6516-01 8 95653671 95653671 A G ESRP1 Missense_Mutation p.N42S 0.31 tolerated(0.55) benign(0.001) TCGA-D6-6516-01 8 98155359 98155359 C T CPQ Missense_Mutation p.A456V 0.09 deleterious(0) benign(0.265) TCGA-D6-6516-01 8 98289088 98289088 G A TSPYL5 Nonsense_Mutation p.Q329* 0.15 TCGA-D6-6516-01 8 98289089 98289089 G A TSPYL5 Silent p.I328I 0.14 TCGA-D6-6516-01 9 100126386 100126386 G A CCDC180 Missense_Mutation p.G1363E 0.14 deleterious(0) probably_damaging(0.969) TCGA-D6-6516-01 9 100672660 100672660 C T C9orf156 Silent p.K216K 0.18 TCGA-D6-6516-01 9 100857229 100857229 G A TRIM14 Missense_Mutation p.P207L 0.13 deleterious(0.03) benign(0.358) TCGA-D6-6516-01 9 101340229 101340229 C T GABBR2 Nonsense_Mutation p.W149* 0.10 TCGA-D6-6516-01 9 102626030 102626030 G A NR4A3 Missense_Mutation p.V599I 0.37 deleterious(0.01) benign(0.053) TCGA-D6-6516-01 9 104375660 104375660 C T GRIN3A Missense_Mutation p.E922K 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-D6-6516-01 9 107456851 107456851 C T OR13D1 Missense_Mutation p.S50F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-D6-6516-01 9 111617981 111617981 G A ACTL7B Missense_Mutation p.S77F 0.12 deleterious(0) possibly_damaging(0.9) TCGA-D6-6516-01 9 112018730 112018730 G A EPB41L4B Silent p.S261S 0.15 TCGA-D6-6516-01 9 112018731 112018731 G A EPB41L4B Missense_Mutation p.S261F 0.16 deleterious(0) probably_damaging(0.949) TCGA-D6-6516-01 9 112898501 112898501 C T PALM2-AKAP2 Missense_Mutation p.S226F 0.21 deleterious(0.03) benign(0.286) TCGA-D6-6516-01 9 113196736 113196736 C T SVEP1 Missense_Mutation p.D1647N 0.42 benign(0.077) TCGA-D6-6516-01 9 114090371 114090371 G A OR2K2 Silent p.L115L 0.25 TCGA-D6-6516-01 9 114500596 114500596 C T C9orf84 Missense_Mutation p.E397K 0.15 deleterious(0.02) benign(0.037) TCGA-D6-6516-01 9 116224447 116224447 G A RGS3 Silent p.R127R 0.10 TCGA-D6-6516-01 9 116359313 116359313 G A RGS3 3'UTR 0.33 TCGA-D6-6516-01 9 117014918 117014918 G A COL27A1 Missense_Mutation p.G1027R 0.15 unknown(0) TCGA-D6-6516-01 9 117130730 117130730 G A AKNA Missense_Mutation p.S521F 0.16 deleterious(0.01) possibly_damaging(0.646) TCGA-D6-6516-01 9 120475272 120475272 G A TLR4 Missense_Mutation p.R289Q 0.17 tolerated(0.31) possibly_damaging(0.523) TCGA-D6-6516-01 9 120476800 120476800 G A TLR4 Silent p.E798E 0.33 TCGA-D6-6516-01 9 123313139 123313139 G A CDK5RAP2 Silent p.L79L 0.11 TCGA-D6-6516-01 9 123737102 123737102 A G C5 Silent p.H1324H 0.12 TCGA-D6-6516-01 9 123744130 123744130 G A C5 Missense_Mutation p.P1160S 0.14 tolerated(0.05) benign(0.032) TCGA-D6-6516-01 9 123880719 123880719 G C CNTRL Silent p.L517L 0.18 TCGA-D6-6516-01 9 125042818 125042818 C T MRRF Missense_Mutation p.S94F 0.39 deleterious(0.01) possibly_damaging(0.707) TCGA-D6-6516-01 9 125487082 125487082 G A OR1L4 Missense_Mutation p.G272S 0.34 deleterious(0.04) benign(0.001) TCGA-D6-6516-01 9 126132586 126132586 G A CRB2 Silent p.G418G 0.18 TCGA-D6-6516-01 9 127245259 127245259 G A NR5A1 Silent p.I388I 0.12 TCGA-D6-6516-01 9 128321983 128321983 G A MAPKAP1 Silent p.F259F 0.12 TCGA-D6-6516-01 9 129931022 129931022 C T RALGPS1 Silent p.L271L 0.11 TCGA-D6-6516-01 9 130476448 130476448 C T PTRH1 Silent p.L192L 0.11 TCGA-D6-6516-01 9 130581106 130581106 C T ENG Silent p.K439K 0.32 TCGA-D6-6516-01 9 130700157 130700157 C T DPM2 5'UTR 0.30 TCGA-D6-6516-01 9 133346897 133346897 C T ASS1 Missense_Mutation p.P198S 0.33 deleterious(0) possibly_damaging(0.873) TCGA-D6-6516-01 9 133506164 133506164 G A FUBP3 Missense_Mutation p.E423K 0.31 deleterious(0) possibly_damaging(0.859) TCGA-D6-6516-01 9 133928244 133928244 G A LAMC3 Missense_Mutation p.E611K 0.31 deleterious(0.02) probably_damaging(0.973) TCGA-D6-6516-01 9 134108929 134108929 C T NUP214 3'UTR 0.18 TCGA-D6-6516-01 9 135447946 135447946 C T C9orf171 3'UTR 0.22 TCGA-D6-6516-01 9 135698629 135698629 C T AK8 Silent p.Q284Q 0.13 TCGA-D6-6516-01 9 135917600 135917600 C T GTF3C5 Missense_Mutation p.R94W 0.10 deleterious(0) possibly_damaging(0.888) TCGA-D6-6516-01 9 136029195 136029195 C T GBGT1 Silent p.R271R 0.09 TCGA-D6-6516-01 9 136029731 136029731 G A GBGT1 Intron 0.44 TCGA-D6-6516-01 9 137623462 137623462 G A COL5A1 Missense_Mutation p.E429K 0.12 probably_damaging(0.967) TCGA-D6-6516-01 9 137704485 137704485 C T COL5A1 Missense_Mutation p.S1260F 0.17 unknown(0) TCGA-D6-6516-01 9 139338337 139338337 G A SEC16A Missense_Mutation p.P2315S 0.08 deleterious(0.04) benign(0.27) TCGA-D6-6516-01 9 139944949 139944949 G A ENTPD2 Silent p.T272T 0.21 TCGA-D6-6516-01 9 140078134 140078134 G A ANAPC2 Silent p.L386L 0.14 TCGA-D6-6516-01 9 140139886 140139886 G A FAM166A Missense_Mutation p.P132L 0.12 deleterious(0.01) possibly_damaging(0.894) TCGA-D6-6516-01 9 140323432 140323432 C T NOXA1 Silent p.S156S 0.20 TCGA-D6-6516-01 9 140358627 140358627 G A PNPLA7 Silent p.F1059F 0.16 TCGA-D6-6516-01 9 140389515 140389515 G A PNPLA7 Silent p.A699A 0.15 TCGA-D6-6516-01 9 140444750 140444750 C G PNPLA7 5'UTR 0.14 TCGA-D6-6516-01 9 140611609 140611609 C T EHMT1 Missense_Mutation p.T206I 0.18 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-D6-6516-01 9 14776177 14776177 C T FREM1 Silent p.R1489R 0.33 TCGA-D6-6516-01 9 15971756 15971756 C T CCDC171 Silent p.P1301P 0.60 TCGA-D6-6516-01 9 16437494 16437494 C T BNC2 Nonsense_Mutation p.W233* 0.20 TCGA-D6-6516-01 9 18675895 18675895 C T ADAMTSL1 Missense_Mutation p.P376S 0.19 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.41 TCGA-D6-6516-01 9 2729471 2729471 G A KCNV2 Missense_Mutation p.G461E 0.18 deleterious(0) probably_damaging(0.996) TCGA-D6-6516-01 9 27359212 27359212 G A MOB3B Silent p.F147F 0.17 TCGA-D6-6516-01 9 32632800 32632800 G A TAF1L Silent p.S926S 0.11 TCGA-D6-6516-01 9 3330439 3330439 C T RFX3 Silent p.G98G 0.39 TCGA-D6-6516-01 9 33467448 33467448 G A NOL6 Missense_Mutation p.R557W 0.22 tolerated(0.07) benign(0.013) TCGA-D6-6516-01 9 33467449 33467449 G A NOL6 Silent p.L556L 0.24 TCGA-D6-6516-01 9 33922871 33922871 A T UBAP2 Missense_Mutation p.F1026L 0.68 deleterious(0) unknown(0) TCGA-D6-6516-01 9 34370795 34370795 G A KIAA1161 3'UTR 0.58 TCGA-D6-6516-01 9 35045473 35045473 G A C9orf131 Silent p.R949R 0.12 TCGA-D6-6516-01 9 35243343 35243343 C T UNC13B Silent p.A150A 0.16 TCGA-D6-6516-01 9 36102140 36102140 C T RECK Missense_Mutation p.P450S 0.15 tolerated(0.46) benign(0.272) TCGA-D6-6516-01 9 37014993 37014993 C T PAX5 Splice_Site p.X137_splice 0.17 TCGA-D6-6516-01 9 37537656 37537656 G A FBXO10 Silent p.D290D 0.12 TCGA-D6-6516-01 9 38396326 38396326 G A ALDH1B1 Nonsense_Mutation p.W194* 0.15 TCGA-D6-6516-01 9 43624966 43624966 C T SPATA31A6 Missense_Mutation p.G1241R 0.08 tolerated(0.17) benign(0.269) TCGA-D6-6516-01 9 5805208 5805208 C T ERMP1 Missense_Mutation p.G578E 0.21 tolerated(0.27) benign(0.299) TCGA-D6-6516-01 9 5968741 5968741 G A KIAA2026 Missense_Mutation p.P497L 0.32 tolerated(0.05) probably_damaging(0.986) TCGA-D6-6516-01 9 6329052 6329052 G T TPD52L3 3'UTR 0.12 TCGA-D6-6516-01 9 72459528 72459528 C T C9orf135 Missense_Mutation p.T83I 0.37 deleterious(0.01) possibly_damaging(0.805) TCGA-D6-6516-01 9 73477822 73477822 A T TRPM3 Splice_Site p.X154_splice 0.11 TCGA-D6-6516-01 9 78953163 78953163 C T PCSK5 Missense_Mutation p.S1562F 0.21 deleterious(0.02) possibly_damaging(0.534) TCGA-D6-6516-01 9 79117759 79117759 G A GCNT1 Silent p.V154V 0.36 TCGA-D6-6516-01 9 79117926 79117926 G A GCNT1 Nonsense_Mutation p.W210* 0.16 TCGA-D6-6516-01 9 79117927 79117927 G A GCNT1 Nonsense_Mutation p.W210* 0.15 TCGA-D6-6516-01 9 79322795 79322795 T A PRUNE2 Missense_Mutation p.K1465N 0.17 tolerated(0.05) possibly_damaging(0.489) TCGA-D6-6516-01 9 82267635 82267635 C T TLE4 Missense_Mutation p.S173F 0.35 tolerated(0.15) possibly_damaging(0.812) TCGA-D6-6516-01 9 84564767 84564767 C T RP11-383M4.6 Intron 0.29 TCGA-D6-6516-01 9 84606513 84606513 C T SPATA31D1 Silent p.F376F 0.34 TCGA-D6-6516-01 9 84607526 84607526 G A SPATA31D1 Missense_Mutation p.R714H 0.16 tolerated(0.14) benign(0.005) TCGA-D6-6516-01 9 85862842 85862842 A G FRMD3 Silent p.G595G 0.28 TCGA-D6-6516-01 9 86586945 86586945 C T HNRNPK Missense_Mutation p.G269S 0.13 tolerated(0.11) benign(0.008) TCGA-D6-6516-01 9 88960644 88960644 A C ZCCHC6 Missense_Mutation p.I253M 0.14 tolerated(0.1) benign(0.142) TCGA-D6-6516-01 9 90272959 90272959 C T DAPK1 Silent p.L614L 0.28 TCGA-D6-6516-01 9 90296363 90296363 G C DAPK1 Missense_Mutation p.Q682H 0.15 tolerated(0.06) benign(0.003) TCGA-D6-6516-01 9 93375903 93375903 C T DIRAS2 Silent p.P69P 0.28 TCGA-D6-6516-01 9 94087606 94087606 C T AUH Missense_Mutation p.D167N 0.21 tolerated(0.11) benign(0.181) TCGA-D6-6516-01 9 95030486 95030486 G A IARS Silent p.I467I 0.16 TCGA-D6-6516-01 9 95610131 95610131 G A ZNF484 Missense_Mutation p.S315F 0.33 tolerated(0.13) benign(0.001) TCGA-D6-6516-01 9 97522670 97522670 A T C9orf3 Missense_Mutation p.Q202L 0.22 deleterious(0) probably_damaging(0.954) TCGA-D6-6516-01 9 99525461 99525461 C A ZNF510 Missense_Mutation p.K97N 0.31 deleterious(0) possibly_damaging(0.518) TCGA-D6-6516-01 X 10163010 10163010 G T CLCN4 Missense_Mutation p.V102F 0.68 tolerated(0.08) benign(0.02) TCGA-D6-6516-01 X 101910958 101910958 C T GPRASP1 Missense_Mutation p.S706L 0.34 deleterious(0.01) possibly_damaging(0.902) TCGA-D6-6516-01 X 106957810 106957810 G A TSC22D3 Missense_Mutation p.P181L 0.82 tolerated(0.13) benign(0.007) TCGA-D6-6516-01 X 106957811 106957811 G A TSC22D3 Missense_Mutation p.P181S 0.83 tolerated(0.12) benign(0.012) TCGA-D6-6516-01 X 109764653 109764653 C T TDGF1P3 RNA 0.33 TCGA-D6-6516-01 X 112021852 112021852 A G AMOT Silent p.T1066T 0.22 TCGA-D6-6516-01 X 115594075 115594075 G A CT83 5'UTR 0.81 TCGA-D6-6516-01 X 11682604 11682604 G A ARHGAP6 Silent p.S115S 0.72 TCGA-D6-6516-01 X 117960306 117960306 G A ZCCHC12 Missense_Mutation p.A367T 0.17 tolerated_low_confidence(0.14) benign(0.057) TCGA-D6-6516-01 X 119513343 119513343 C T ATP1B4 Missense_Mutation p.P310S 0.31 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 X 120181905 120181905 C T GLUD2 Missense_Mutation p.R123W 0.46 deleterious(0.04) benign(0.114) TCGA-D6-6516-01 X 123554341 123554341 C T TENM1 Missense_Mutation p.G1601D 0.18 tolerated(0.21) benign(0.019) TCGA-D6-6516-01 X 127185831 127185831 G A ACTRT1 Nonsense_Mutation p.R119* 0.78 TCGA-D6-6516-01 X 128926347 128926347 G A SASH3 Silent p.G162G 0.20 TCGA-D6-6516-01 X 129519167 129519167 G A GPR119 Silent p.V85V 0.14 TCGA-D6-6516-01 X 130217753 130217753 T G ARHGAP36 Missense_Mutation p.V122G 0.60 deleterious(0) probably_damaging(0.912) TCGA-D6-6516-01 X 130220530 130220530 C T ARHGAP36 Intron 0.78 TCGA-D6-6516-01 X 130411004 130411004 C T IGSF1 Silent p.V844V 0.20 TCGA-D6-6516-01 X 130413126 130413126 C T IGSF1 Missense_Mutation p.E586K 0.43 tolerated(0.3) benign(0.423) TCGA-D6-6516-01 X 1314914 1314914 C G CRLF2 Silent p.L249L 0.22 TCGA-D6-6516-01 X 141291813 141291813 G A MAGEC2 5'UTR 0.10 TCGA-D6-6516-01 X 142795189 142795189 C T SPANXN2 Silent p.E163E 0.17 TCGA-D6-6516-01 X 151821298 151821298 C T GABRQ Missense_Mutation p.R485C 0.12 tolerated(0.06) benign(0.04) TCGA-D6-6516-01 X 152806879 152806879 C T ATP2B3 Missense_Mutation p.P91S 0.30 deleterious(0.01) probably_damaging(1) TCGA-D6-6516-01 X 152807134 152807134 G T ATP2B3 Silent p.G138G 0.74 TCGA-D6-6516-01 X 152938472 152938472 C T PNCK Silent p.R103R 0.24 TCGA-D6-6516-01 X 153095884 153095884 G A PDZD4 5'UTR 0.12 TCGA-D6-6516-01 X 153208459 153208459 G A RENBP Nonsense_Mutation p.Q179* 0.20 TCGA-D6-6516-01 X 153225815 153225815 G A HCFC1 Missense_Mutation p.P319S 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-D6-6516-01 X 153524312 153524312 C T TKTL1 Missense_Mutation p.H34Y 0.15 tolerated(0.37) benign(0.088) TCGA-D6-6516-01 X 153539193 153539193 G A TKTL1 Silent p.R119R 0.83 TCGA-D6-6516-01 X 153589715 153589715 G A FLNA Silent p.P1056P 0.64 TCGA-D6-6516-01 X 153590083 153590083 G A FLNA Missense_Mutation p.P967S 0.15 deleterious(0.04) possibly_damaging(0.811) TCGA-D6-6516-01 X 153660716 153660716 C T ATP6AP1 Silent p.P156P 0.09 TCGA-D6-6516-01 X 1742148 1742148 C T ASMT Silent p.L62L 0.07 TCGA-D6-6516-01 X 1743190 1743190 C T ASMT Silent p.S91S 0.08 TCGA-D6-6516-01 X 21675148 21675148 G A KLHL34 Silent p.I253I 0.50 TCGA-D6-6516-01 X 23933835 23933835 G A CXorf58 Missense_Mutation p.E79K 0.43 deleterious(0.01) probably_damaging(0.921) TCGA-D6-6516-01 X 29301114 29301114 C T IL1RAPL1 Missense_Mutation p.P48S 0.54 deleterious(0) benign(0.265) TCGA-D6-6516-01 X 32305752 32305752 C A DMD Missense_Mutation p.A2062S 0.26 possibly_damaging(0.567) TCGA-D6-6516-01 X 3239247 3239247 G A MXRA5 Silent p.S1493S 0.36 TCGA-D6-6516-01 X 34148023 34148023 A G FAM47A Silent p.D791D 0.72 TCGA-D6-6516-01 X 34961441 34961441 C T FAM47B Missense_Mutation p.R165C 0.40 tolerated(0.2) benign(0.011) TCGA-D6-6516-01 X 35821010 35821010 G A MAGEB16 Missense_Mutation p.G233R 0.55 deleterious(0.05) possibly_damaging(0.808) TCGA-D6-6516-01 X 41077795 41077795 C T USP9X Missense_Mutation p.S2127F 0.24 deleterious(0) probably_damaging(0.982) TCGA-D6-6516-01 X 41082519 41082519 T A USP9X Missense_Mutation p.F2205L 0.72 deleterious(0.03) probably_damaging(0.914) TCGA-D6-6516-01 X 41333734 41333734 G A NYX Missense_Mutation p.R343H 0.22 tolerated(0.31) benign(0.001) TCGA-D6-6516-01 X 41555478 41555478 G A GPR34 Missense_Mutation p.G198R 0.29 tolerated(0.33) benign(0.408) TCGA-D6-6516-01 X 47486606 47486606 G A CFP Missense_Mutation p.P234S 0.47 deleterious(0.01) probably_damaging(0.979) TCGA-D6-6516-01 X 48318232 48318232 G A SLC38A5 Missense_Mutation p.P367S 0.70 tolerated(0.25) possibly_damaging(0.862) TCGA-D6-6516-01 X 50147114 50147114 C T DGKK RNA 0.76 TCGA-D6-6516-01 X 51643373 51643373 T G MAGED1 Missense_Mutation p.V703G 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-D6-6516-01 X 53588762 53588762 C T HUWE1 Missense_Mutation p.E2488K 0.74 benign(0.292) TCGA-D6-6516-01 X 54837732 54837732 C T MAGED2 Missense_Mutation p.P299L 0.29 deleterious(0) probably_damaging(0.998) TCGA-D6-6516-01 X 55650779 55650779 G A FOXR2 Missense_Mutation p.G212D 0.38 deleterious(0.03) probably_damaging(0.923) TCGA-D6-6516-01 X 65242365 65242365 C T VSIG4 Intron 0.75 TCGA-D6-6516-01 X 65242650 65242650 G A VSIG4 Intron 0.39 TCGA-D6-6516-01 X 73053158 73053158 G A XIST RNA 0.14 TCGA-D6-6516-01 X 73053159 73053159 G A XIST RNA 0.16 TCGA-D6-6516-01 X 74519598 74519598 C T UPRT Silent p.D197D 0.79 TCGA-D6-6516-01 X 76890177 76890177 C T ATRX Missense_Mutation p.D1573N 0.78 possibly_damaging(0.836) TCGA-D6-6516-01 X 80377054 80377054 T A HMGN5 5'UTR 0.15 TCGA-D6-6516-01 X 86773151 86773151 G A KLHL4 Silent p.Q85Q 0.14 TCGA-D6-6516-01 X 86873069 86873069 C T KLHL4 Nonsense_Mutation p.R288* 0.19 TCGA-D6-6516-01 X 86921623 86921623 C T KLHL4 Intron 0.78 TCGA-D6-6516-01 X 89177627 89177627 G T TGIF2LX Missense_Mutation p.Q181H 0.14 deleterious(0.01) possibly_damaging(0.496) TCGA-D6-6516-01 X 91132697 91132697 G A PCDH11X Silent p.T486T 0.74 TCGA-D6-6516-01 X 91642907 91642907 G A PCDH11X Silent p.G1106G 0.73 TCGA-D6-6516-01 X 91642908 91642908 G A PCDH11X Missense_Mutation p.D1107N 0.71 deleterious(0) probably_damaging(0.971) TCGA-D6-6516-01 X 96369956 96369956 C T DIAPH2 Missense_Mutation p.L861F 0.40 deleterious(0) probably_damaging(1) TCGA-D6-6516-01 X 99920267 99920267 C T SRPX2 Missense_Mutation p.P187L 0.33 deleterious(0) probably_damaging(0.999) TCGA-D6-6516-01 X 99945635 99945635 C T SYTL4 Silent p.R214R 0.23 TCGA-D6-6516-01 Y 23557177 23557177 C T RBMY2EP Intron 0.38 TCGA-D6-6517-01 10 105005908 105005908 C T RPEL1 Missense_Mutation p.P52L 0.16 deleterious(0.01) possibly_damaging(0.856) TCGA-D6-6517-01 10 105201732 105201732 G A PDCD11 Silent p.T1569T 0.18 TCGA-D6-6517-01 10 12870837 12870837 G A CAMK1D Missense_Mutation p.R370Q 0.20 tolerated_low_confidence(0.16) benign(0.143) TCGA-D6-6517-01 10 50819421 50819421 G C SLC18A3 Missense_Mutation p.R212P 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-D6-6517-01 10 71175838 71175838 C T TACR2 Missense_Mutation p.C81Y 0.41 deleterious(0.01) possibly_damaging(0.449) TCGA-D6-6517-01 11 33564673 33564673 G C KIAA1549L Missense_Mutation p.E225Q 0.17 tolerated_low_confidence(0.48) benign(0.003) TCGA-D6-6517-01 11 55587567 55587567 C G OR5D18 Silent p.V154V 0.19 TCGA-D6-6517-01 11 56756943 56756943 T G OR5AK2 Silent p.L185L 0.17 TCGA-D6-6517-01 11 792566 792566 C A SLC25A22 Missense_Mutation p.A192S 0.16 tolerated(0.06) probably_damaging(0.936) TCGA-D6-6517-01 11 85779753 85779753 T G PICALM Missense_Mutation p.K24Q 0.38 deleterious(0) benign(0.032) TCGA-D6-6517-01 11 9830573 9830573 A G SBF2 Intron 0.09 TCGA-D6-6517-01 12 100551063 100551063 G A AC010203.1 RNA 0.21 TCGA-D6-6517-01 12 107254159 107254159 G T RIC8B Missense_Mutation p.D474Y 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6517-01 12 113624689 113624689 G A RITA1 Silent p.R46R 0.18 TCGA-D6-6517-01 12 131487352 131487352 C T GPR133 Intron 0.19 TCGA-D6-6517-01 12 14924050 14924050 T C HIST4H4 5'UTR 0.21 TCGA-D6-6517-01 12 51173954 51173954 C T ATF1 Missense_Mutation p.T9M 0.27 deleterious_low_confidence(0.02) benign(0.181) TCGA-D6-6517-01 12 80655768 80655768 G A OTOGL Missense_Mutation p.E628K 0.14 deleterious(0) probably_damaging(0.999) TCGA-D6-6517-01 12 8200482 8200482 T A FOXJ2 Missense_Mutation p.F274L 0.20 tolerated(1) probably_damaging(0.914) TCGA-D6-6517-01 13 107863084 107863084 A T FAM155A Missense_Mutation p.L312H 0.14 deleterious(0) probably_damaging(0.99) TCGA-D6-6517-01 13 111117869 111117869 C T COL4A2 Missense_Mutation p.R632C 0.20 benign(0.276) TCGA-D6-6517-01 14 103958157 103958157 A G MARK3 Missense_Mutation p.I544V 0.16 tolerated(0.45) benign(0.001) TCGA-D6-6517-01 14 64954345 64954345 A - ZBTB25 Frame_Shift_Del p.S202Pfs*12 0.23 TCGA-D6-6517-01 14 75520263 75520263 T C ACYP1 Missense_Mutation p.M62V 0.26 deleterious(0.04) benign(0.022) TCGA-D6-6517-01 15 37391579 37391579 A C MEIS2 Intron 0.07 TCGA-D6-6517-01 15 60297484 60297484 C A FOXB1 Missense_Mutation p.R108S 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-D6-6517-01 15 62989996 62989996 G A TLN2 Missense_Mutation p.V468I 0.39 tolerated(0.4) benign(0) TCGA-D6-6517-01 16 58705074 58705074 C A SLC38A7 Missense_Mutation p.R369L 0.13 tolerated(0.73) probably_damaging(0.947) TCGA-D6-6517-01 16 65319299 65319299 C T LINC00922 RNA 0.11 TCGA-D6-6517-01 17 14205268 14205268 G T HS3ST3B1 Missense_Mutation p.V145L 0.17 deleterious(0.03) possibly_damaging(0.888) TCGA-D6-6517-01 17 39551520 39551520 C G KRT31 Missense_Mutation p.E285Q 0.16 deleterious(0) probably_damaging(0.986) TCGA-D6-6517-01 17 42882699 42882699 C A GJC1 Missense_Mutation p.D163Y 0.17 deleterious(0) possibly_damaging(0.67) TCGA-D6-6517-01 17 4607440 4607440 T C PELP1 5'Flank 0.25 TCGA-D6-6517-01 17 65174905 65174905 T C HELZ Missense_Mutation p.I434V 0.04 tolerated(0.15) benign(0.153) TCGA-D6-6517-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.19 tolerated(0.11) benign(0.308) TCGA-D6-6517-01 17 76481099 76481099 C A DNAH17 Silent p.P2486P 0.26 TCGA-D6-6517-01 17 8047139 8047139 G A PER1 Silent p.A839A 0.31 TCGA-D6-6517-01 18 13826449 13826449 C A MC5R Silent p.R229R 0.20 TCGA-D6-6517-01 19 22940099 22940099 T G ZNF99 3'Flank 0.19 TCGA-D6-6517-01 19 52033054 52033054 T G SIGLEC6 Silent p.A312A 0.29 TCGA-D6-6517-01 1 100602603 100602603 C A TRMT13 Missense_Mutation p.H75N 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6517-01 1 110884597 110884598 - T RBM15 Frame_Shift_Ins p.A858Cfs*11 0.27 TCGA-D6-6517-01 1 150255844 150255844 G C C1orf51 Missense_Mutation p.R56P 0.05 deleterious(0.01) probably_damaging(0.986) TCGA-D6-6517-01 1 151261022 151261023 - T ZNF687 Frame_Shift_Ins p.M712Ifs*17 0.27 TCGA-D6-6517-01 1 158450102 158450102 C T OR10R2 Silent p.A145A 0.18 TCGA-D6-6517-01 1 23219501 23219501 G A EPHB2 Missense_Mutation p.R518H 0.27 tolerated(0.14) possibly_damaging(0.62) TCGA-D6-6517-01 1 233313598 233313598 G T PCNXL2 Missense_Mutation p.L1075M 0.07 tolerated(0.16) benign(0.017) TCGA-D6-6517-01 1 52256303 52256304 - CC NRD1 Frame_Shift_Ins p.L1092Gfs*2 0.17 TCGA-D6-6517-01 1 65684449 65684449 C T AK4 Missense_Mutation p.T93I 0.18 deleterious(0) probably_damaging(1) TCGA-D6-6517-01 1 75072553 75072553 C T C1orf173 Silent p.P407P 0.17 TCGA-D6-6517-01 20 43246985 43246985 G T PKIG Missense_Mutation p.D71Y 0.21 deleterious(0.01) possibly_damaging(0.72) TCGA-D6-6517-01 20 47591350 47591350 C T ARFGEF2 Silent p.L571L 0.37 TCGA-D6-6517-01 20 5974238 5974238 C G MCM8 Missense_Mutation p.A776G 0.15 tolerated(0.18) benign(0.087) TCGA-D6-6517-01 21 11039224 11039224 T C BAGE2 RNA 0.04 TCGA-D6-6517-01 21 34931551 34931551 G A SON Missense_Mutation p.A2113T 0.21 unknown(0) TCGA-D6-6517-01 22 30951241 30951241 C A GAL3ST1 Missense_Mutation p.R324L 0.33 deleterious(0) possibly_damaging(0.524) TCGA-D6-6517-01 2 175437112 175437112 A G WIPF1 Missense_Mutation p.F141L 0.05 tolerated(0.08) probably_damaging(0.952) TCGA-D6-6517-01 2 212426697 212426697 C G ERBB4 Missense_Mutation p.E806D 0.21 tolerated(1) benign(0) TCGA-D6-6517-01 2 30790956 30790956 C T LCLAT1 Missense_Mutation p.A219V 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6517-01 2 74689540 74689540 A G MOGS Missense_Mutation p.V459A 0.15 deleterious(0) possibly_damaging(0.472) TCGA-D6-6517-01 2 85554626 85554627 - GGT TGOLN2 In_Frame_Ins p.T76dup 0.15 TCGA-D6-6517-01 2 86459838 86459838 C T REEP1 Missense_Mutation p.G176S 0.26 tolerated(0.3) benign(0.003) TCGA-D6-6517-01 2 89442082 89442082 T A IGKV3-20 Missense_Mutation p.Y108F 0.15 tolerated(0.06) benign(0.145) TCGA-D6-6517-01 3 120469672 120469672 C G GTF2E1 Nonsense_Mutation p.Y91* 0.17 TCGA-D6-6517-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.09 deleterious(0.04) probably_damaging(0.96) TCGA-D6-6517-01 3 52557481 52557481 C A STAB1 Missense_Mutation p.N2393K 0.28 deleterious(0) possibly_damaging(0.892) TCGA-D6-6517-01 3 78655939 78655939 C T ROBO1 Missense_Mutation p.R1563H 0.24 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-D6-6517-01 4 134072815 134072815 T C PCDH10 Missense_Mutation p.I507T 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-D6-6517-01 4 155748941 155748941 T C RBM46 Intron 0.16 TCGA-D6-6517-01 4 186283809 186283809 A G SNX25 Missense_Mutation p.I796V 0.23 tolerated(0.39) benign(0.013) TCGA-D6-6517-01 4 187629795 187629796 - A FAT1 Frame_Shift_Ins p.S396Ffs*8 0.21 TCGA-D6-6517-01 4 88755893 88755893 C T MEPE Silent p.L9L 0.19 TCGA-D6-6517-01 4 91229530 91229530 C T CCSER1 Missense_Mutation p.S32L 0.15 deleterious(0) probably_damaging(0.997) TCGA-D6-6517-01 5 43280501 43280501 G C NIM1K Silent p.G327G 0.17 TCGA-D6-6517-01 5 9629960 9629960 A G TAS2R1 Missense_Mutation p.I62T 0.44 tolerated(0.06) possibly_damaging(0.516) TCGA-D6-6517-01 6 134349644 134349644 G A SLC2A12 Missense_Mutation p.A440V 0.22 tolerated(0.33) benign(0.008) TCGA-D6-6517-01 6 138413171 138413171 T A PERP 3'UTR 0.23 TCGA-D6-6517-01 6 150001304 150001304 C A LATS1 Missense_Mutation p.R767L 0.28 deleterious(0) probably_damaging(0.974) TCGA-D6-6517-01 6 27100994 27100994 G T HIST1H2AG Silent p.A48A 0.19 TCGA-D6-6517-01 6 29365111 29365111 C T OR12D2 Missense_Mutation p.T212I 0.12 tolerated(1) benign(0.042) TCGA-D6-6517-01 6 33234453 33234453 C T VPS52 Missense_Mutation p.A388T 0.11 deleterious(0) probably_damaging(0.972) TCGA-D6-6517-01 6 348863 348863 G T DUSP22 Intron 0.08 TCGA-D6-6517-01 7 107114861 107114861 A G GPR22 Missense_Mutation p.E119G 0.25 deleterious(0) probably_damaging(0.998) TCGA-D6-6517-01 7 126746588 126746588 C T GRM8 Missense_Mutation p.S230N 0.20 deleterious(0.03) possibly_damaging(0.893) TCGA-D6-6517-01 7 149255890 149255890 G C ZNF767 RNA 0.14 TCGA-D6-6517-01 8 107782152 107782152 A G ABRA Silent p.H89H 0.09 TCGA-D6-6517-01 8 145724384 145724384 C T PPP1R16A Missense_Mutation p.T139M 0.16 deleterious(0) probably_damaging(0.997) TCGA-D6-6517-01 8 30703495 30703495 T C TEX15 Silent p.T1013T 0.31 TCGA-D6-6517-01 8 3351179 3351179 C T CSMD1 Missense_Mutation p.G472R 0.31 probably_damaging(0.996) TCGA-D6-6517-01 8 39785691 39785691 T G IDO1 Missense_Mutation p.L400W 0.20 deleterious(0) probably_damaging(0.999) TCGA-D6-6517-01 8 67771691 67771691 G C SGK3 Missense_Mutation p.E456Q 0.32 tolerated(0.11) probably_damaging(0.999) TCGA-D6-6517-01 9 32488812 32488812 C T DDX58 Silent p.G291G 0.23 TCGA-D6-6517-01 9 35957103 35957103 T C OR2S2 3'Flank 0.24 TCGA-D6-6517-01 9 78969062 78969062 C T PCSK5 Silent p.S1700S 0.23 TCGA-D6-6517-01 X 129147297 129147297 C A BCORL1 Silent p.V183V 0.26 TCGA-D6-6517-01 X 148770539 148770539 T C MAGEA11 5'UTR 0.55 TCGA-D6-6517-01 X 43590580 43590580 C T MAOA Silent p.H246H 0.62 TCGA-D6-6823-01 10 43692516 43692516 T C RASGEF1A Missense_Mutation p.E419G 0.19 deleterious(0) benign(0.342) TCGA-D6-6823-01 11 124756427 124756427 G T ROBO4 Silent p.A909A 0.15 TCGA-D6-6823-01 11 19735323 19735323 C T NAV2 Missense_Mutation p.P28S 0.22 tolerated_low_confidence(0.06) probably_damaging(0.995) TCGA-D6-6823-01 11 34673089 34673089 A T EHF Missense_Mutation p.E158V 0.33 tolerated(0.09) benign(0.178) TCGA-D6-6823-01 11 4566851 4566851 G A OR52M1 Missense_Mutation p.G144D 0.31 deleterious(0) possibly_damaging(0.616) TCGA-D6-6823-01 11 47381575 47381575 G C SPI1 Missense_Mutation p.F54L 0.46 tolerated(0.27) benign(0.117) TCGA-D6-6823-01 11 4967421 4967421 C T OR51A4 Missense_Mutation p.V304I 0.10 tolerated(1) benign(0.007) TCGA-D6-6823-01 11 56128447 56128447 C T OR8J1 Missense_Mutation p.A242V 0.33 deleterious(0.02) benign(0.25) TCGA-D6-6823-01 11 65826722 65826722 C T SF3B2 Silent p.D411D 0.27 TCGA-D6-6823-01 11 71939892 71939892 G A INPPL1 Splice_Site p.X173_splice 0.31 TCGA-D6-6823-01 11 77924730 77924730 C A USP35 Silent p.I976I 0.26 TCGA-D6-6823-01 11 92085482 92085482 G A FAT3 Missense_Mutation p.M68I 0.24 benign(0.298) TCGA-D6-6823-01 11 92901243 92901243 T C SLC36A4 Missense_Mutation p.Y212C 0.29 deleterious(0) probably_damaging(0.976) TCGA-D6-6823-01 11 96125222 96125222 T G JRKL Missense_Mutation p.L470R 0.17 tolerated(0.11) possibly_damaging(0.656) TCGA-D6-6823-01 12 100604114 100604114 A T ACTR6 Missense_Mutation p.E186V 0.29 deleterious(0) probably_damaging(0.999) TCGA-D6-6823-01 12 124979778 124979778 G A NCOR2 Missense_Mutation p.P7L 0.14 unknown(0) TCGA-D6-6823-01 12 21621712 21621712 T C PYROXD1 3'UTR 0.25 TCGA-D6-6823-01 12 27888432 27888432 A C MRPS35 Missense_Mutation p.K192T 0.30 deleterious(0) probably_damaging(0.976) TCGA-D6-6823-01 12 2907902 2907902 C A FKBP4 Missense_Mutation p.L142M 0.25 deleterious(0.01) probably_damaging(0.933) TCGA-D6-6823-01 12 4854675 4854675 C T GALNT8 Missense_Mutation p.T314I 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-D6-6823-01 12 5021157 5021157 A T KCNA1 Missense_Mutation p.I205F 0.26 tolerated(0.73) benign(0.001) TCGA-D6-6823-01 12 53201426 53201426 A G KRT4 Splice_Site p.X449_splice 0.34 TCGA-D6-6823-01 12 64173739 64173739 G C TMEM5 5'UTR 0.10 TCGA-D6-6823-01 12 89917883 89917883 C A GALNT4 Missense_Mutation p.W148C 0.28 deleterious(0) probably_damaging(0.989) TCGA-D6-6823-01 13 46716466 46716466 C T LCP1 Missense_Mutation p.R488H 0.14 tolerated(0.16) benign(0.008) TCGA-D6-6823-01 14 105613864 105613864 T - JAG2 Frame_Shift_Del p.N789Ifs*77 0.22 TCGA-D6-6823-01 14 19378056 19378056 C A OR11H12 Missense_Mutation p.L155I 0.07 tolerated(0.06) benign(0.073) TCGA-D6-6823-01 14 23240279 23240279 C A OXA1L Missense_Mutation p.S391Y 0.34 deleterious(0.01) benign(0.012) TCGA-D6-6823-01 14 57741158 57741159 - A AP5M1 Frame_Shift_Ins p.E92Rfs*12 0.26 TCGA-D6-6823-01 15 20644856 20644856 T G HERC2P3 RNA 0.18 TCGA-D6-6823-01 15 38773633 38773633 G A FAM98B Silent p.R290R 0.16 TCGA-D6-6823-01 15 48784730 48784730 T G FBN1 Missense_Mutation p.N928H 0.18 probably_damaging(1) TCGA-D6-6823-01 15 88678559 88678559 C A NTRK3 Missense_Mutation p.R326L 0.35 tolerated(0.07) benign(0.025) TCGA-D6-6823-01 16 61687669 61687669 C A CDH8 Missense_Mutation p.G748V 0.24 deleterious(0.03) probably_damaging(1) TCGA-D6-6823-01 16 66947070 66947070 C T CDH16 Missense_Mutation p.D340N 0.21 tolerated(0.44) benign(0.056) TCGA-D6-6823-01 16 68732227 68732227 A G CDH3 Missense_Mutation p.D805G 0.23 deleterious(0.03) probably_damaging(1) TCGA-D6-6823-01 16 81145910 81145910 A T PKD1L2 RNA 0.12 TCGA-D6-6823-01 17 40256842 40256842 A C DHX58 Missense_Mutation p.L502R 0.29 deleterious(0) probably_damaging(0.986) TCGA-D6-6823-01 17 41256883 41256883 A C BRCA1 Splice_Site p.X101_splice 0.37 TCGA-D6-6823-01 17 42284865 42284865 G A UBTF Missense_Mutation p.S709F 0.37 deleterious_low_confidence(0.02) unknown(0) TCGA-D6-6823-01 17 45360736 45360736 C T ITGB3 Missense_Mutation p.S61L 0.34 deleterious(0.02) benign(0.006) TCGA-D6-6823-01 17 47076479 47076479 G C IGF2BP1 Missense_Mutation p.E62Q 0.17 tolerated(0.07) possibly_damaging(0.836) TCGA-D6-6823-01 17 56291137 56291137 T C MKS1 Silent p.K246K 0.31 TCGA-D6-6823-01 17 72246094 72246094 G A TTYH2 Missense_Mutation p.R317H 0.19 deleterious(0) probably_damaging(0.989) TCGA-D6-6823-01 17 7497597 7497597 G A FXR2 Nonsense_Mutation p.R327* 0.22 TCGA-D6-6823-01 17 7578520 7578520 A T TP53 Missense_Mutation p.L137Q 0.56 deleterious(0) probably_damaging(0.99) TCGA-D6-6823-01 18 13621135 13621135 A C LDLRAD4 Missense_Mutation p.Q67H 0.32 deleterious(0) probably_damaging(0.995) TCGA-D6-6823-01 18 580762 580762 C T CETN1 Silent p.T118T 0.36 TCGA-D6-6823-01 19 16638963 16638963 G A CHERP Silent p.H411H 0.27 TCGA-D6-6823-01 19 2877900 2877900 A G ZNF556 Missense_Mutation p.Y315C 0.14 deleterious(0) probably_damaging(0.946) TCGA-D6-6823-01 19 3002388 3002388 G C TLE2 Missense_Mutation p.H670Q 0.20 deleterious(0) probably_damaging(1) TCGA-D6-6823-01 19 37210259 37210259 A G ZNF567 Silent p.G180G 0.32 TCGA-D6-6823-01 19 39804929 39804929 G A LRFN1 Missense_Mutation p.R350W 0.36 deleterious(0) possibly_damaging(0.829) TCGA-D6-6823-01 19 40520758 40520758 T C ZNF546 Silent p.C527C 0.35 TCGA-D6-6823-01 19 53454451 53454451 G C ZNF816 Missense_Mutation p.Q193E 0.32 tolerated(0.07) possibly_damaging(0.7) TCGA-D6-6823-01 19 54692110 54692110 G T MBOAT7 Missense_Mutation p.T56N 0.33 deleterious(0.01) possibly_damaging(0.717) TCGA-D6-6823-01 19 59073795 59073796 - C MZF1 Frame_Shift_Ins p.R617Efs*13 0.21 TCGA-D6-6823-01 19 6697422 6697422 A G C3 Missense_Mutation p.V910A 0.33 deleterious(0) possibly_damaging(0.623) TCGA-D6-6823-01 19 8662012 8662012 G A ADAMTS10 Missense_Mutation p.T300I 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-D6-6823-01 1 100819350 100819350 C A CDC14A Missense_Mutation p.P28T 0.23 deleterious(0) probably_damaging(0.957) TCGA-D6-6823-01 1 10494001 10494001 G A APITD1 Missense_Mutation p.E52K 0.25 deleterious(0.01) probably_damaging(0.95) TCGA-D6-6823-01 1 157567778 157567778 G A FCRL4 5'UTR 0.38 TCGA-D6-6823-01 1 179401427 179401427 A C AXDND1 Missense_Mutation p.K505Q 0.25 tolerated(0.05) benign(0.019) TCGA-D6-6823-01 1 19166514 19166514 G A TAS1R2 Missense_Mutation p.T700M 0.33 tolerated(0.21) benign(0.298) TCGA-D6-6823-01 1 192780144 192780144 C T RGS2 Missense_Mutation p.S103L 0.29 deleterious(0) probably_damaging(0.998) TCGA-D6-6823-01 1 207143507 207143507 C G FCAMR 5'UTR 0.28 TCGA-D6-6823-01 1 207240960 207240960 G A PFKFB2 Missense_Mutation p.R250H 0.29 benign(0.002) TCGA-D6-6823-01 1 215408401 215408401 C T KCNK2 Silent p.P398P 0.32 TCGA-D6-6823-01 1 220440683 220440683 T C RAB3GAP2 Intron 0.32 TCGA-D6-6823-01 1 231830106 231830106 G T DISC1 Missense_Mutation p.G201V 0.11 deleterious(0.02) possibly_damaging(0.601) TCGA-D6-6823-01 1 240939491 240939491 C T RGS7 Missense_Mutation p.R479K 0.06 tolerated_low_confidence(0.49) benign(0.14) TCGA-D6-6823-01 1 85331609 85331609 G - LPAR3 Frame_Shift_Del p.Y66Tfs*7 0.27 TCGA-D6-6823-01 1 99771647 99771647 G A LPPR4 Missense_Mutation p.R458Q 0.27 deleterious(0.02) possibly_damaging(0.602) TCGA-D6-6823-01 20 2411089 2411089 C A TGM6 Intron 0.38 TCGA-D6-6823-01 20 58560126 58560126 C T CDH26 Missense_Mutation p.T260I 0.15 tolerated(0.05) possibly_damaging(0.515) TCGA-D6-6823-01 21 31768590 31768590 G T KRTAP13-1 Missense_Mutation p.E62D 0.30 deleterious(0.04) benign(0.248) TCGA-D6-6823-01 21 43279700 43279700 C A PRDM15 Splice_Site p.X344_splice 0.43 TCGA-D6-6823-01 22 20781751 20781752 - GGACC SCARF2 Frame_Shift_Ins p.S548Gfs*50 0.19 TCGA-D6-6823-01 22 26902303 26902303 G A TFIP11 Silent p.Y162Y 0.13 TCGA-D6-6823-01 22 45944530 45944530 C G FBLN1 Missense_Mutation p.I493M 0.24 deleterious(0) probably_damaging(0.924) TCGA-D6-6823-01 2 161138800 161138800 T C RBMS1 Intron 0.29 TCGA-D6-6823-01 2 163005678 163005678 A G GCG Missense_Mutation p.I4T 0.35 tolerated(0.16) benign(0.012) TCGA-D6-6823-01 2 170134277 170134277 C A LRP2 Missense_Mutation p.V584L 0.36 benign(0.285) TCGA-D6-6823-01 2 179742589 179742589 G A CCDC141 Intron 0.36 TCGA-D6-6823-01 2 219099116 219099116 A G ARPC2 Silent p.E88E 0.29 TCGA-D6-6823-01 2 223773571 223773571 T A ACSL3 Missense_Mutation p.H27Q 0.30 tolerated(0.34) benign(0.008) TCGA-D6-6823-01 2 234346041 234346041 G T DGKD Nonsense_Mutation p.E280* 0.31 TCGA-D6-6823-01 2 238672160 238672160 T G LRRFIP1 Missense_Mutation p.L602V 0.31 tolerated(0.21) benign(0.02) TCGA-D6-6823-01 2 80782950 80782950 T C CTNNA2 Missense_Mutation p.M558T 0.11 deleterious(0) probably_damaging(0.997) TCGA-D6-6823-01 3 127541162 127541163 - A MGLL 5'UTR 0.30 TCGA-D6-6823-01 3 129811047 129811047 A T RP11-93K22.13 Intron 0.23 TCGA-D6-6823-01 3 138037035 138037035 G A NME9 Silent p.L52L 0.58 TCGA-D6-6823-01 3 195498614 195498614 G A MUC4 Missense_Mutation p.T4384I 0.27 benign(0.177) TCGA-D6-6823-01 3 39374725 39374725 T G CCR8 Silent p.A301A 0.40 TCGA-D6-6823-01 3 50095370 50095370 A T RBM6 Missense_Mutation p.T635S 0.38 tolerated(1) benign(0.001) TCGA-D6-6823-01 3 51863478 51863478 C T IQCF3 5'UTR 0.25 TCGA-D6-6823-01 3 71026794 71026794 C G FOXP1 Missense_Mutation p.Q478H 0.18 tolerated(0.05) probably_damaging(0.993) TCGA-D6-6823-01 4 121958534 121958534 G T NDNF Missense_Mutation p.P198T 0.12 tolerated(0.11) possibly_damaging(0.872) TCGA-D6-6823-01 4 122063056 122063056 G T TNIP3 Missense_Mutation p.P344H 0.17 deleterious(0.03) benign(0.007) TCGA-D6-6823-01 4 128814677 128814677 A G PLK4 Missense_Mutation p.I778V 0.18 tolerated(0.48) benign(0.005) TCGA-D6-6823-01 4 6864910 6864910 A G KIAA0232 Missense_Mutation p.Y934C 0.21 deleterious(0) probably_damaging(1) TCGA-D6-6823-01 4 84519214 84519214 A T AGPAT9 Missense_Mutation p.Q336L 0.21 tolerated(0.09) benign(0.013) TCGA-D6-6823-01 4 96222757 96222757 A T UNC5C Missense_Mutation p.Y164N 0.17 deleterious(0.02) possibly_damaging(0.477) TCGA-D6-6823-01 5 10448390 10448390 G A ROPN1L Silent p.S50S 0.33 TCGA-D6-6823-01 5 140517214 140517214 G C PCDHB5 Missense_Mutation p.G733A 0.41 deleterious_low_confidence(0.01) benign(0.301) TCGA-D6-6823-01 5 147040903 147040903 C T JAKMIP2 Missense_Mutation p.E79K 0.49 deleterious(0.03) probably_damaging(0.969) TCGA-D6-6823-01 5 38493875 38493875 A G LIFR Missense_Mutation p.I633T 0.38 tolerated(0.71) benign(0.001) TCGA-D6-6823-01 6 100838366 100838366 G T SIM1 Missense_Mutation p.S724R 0.16 deleterious_low_confidence(0.02) benign(0.027) TCGA-D6-6823-01 6 10586756 10586756 C T GCNT2 Intron 0.32 TCGA-D6-6823-01 6 119669764 119669764 T A MAN1A1 Missense_Mutation p.K156M 0.08 deleterious(0.01) possibly_damaging(0.853) TCGA-D6-6823-01 6 142718817 142718817 C G GPR126 Missense_Mutation p.Q498E 0.12 tolerated(0.83) benign(0.003) TCGA-D6-6823-01 6 152757214 152757214 C T SYNE1 Missense_Mutation p.S1391N 0.14 benign(0.001) TCGA-D6-6823-01 6 158516842 158516842 C T SYNJ2 Missense_Mutation p.P1313S 0.10 tolerated_low_confidence(0.19) benign(0.003) TCGA-D6-6823-01 6 30569260 30569260 T C PPP1R10 3'UTR 0.25 TCGA-D6-6823-01 6 32337718 32337718 A C C6orf10 Missense_Mutation p.I19S 0.39 deleterious(0) benign(0.012) TCGA-D6-6823-01 6 36104511 36104511 G A MAPK13 Missense_Mutation p.E192K 0.14 deleterious(0) probably_damaging(0.999) TCGA-D6-6823-01 6 46518026 46518026 G T CYP39A1 3'UTR 0.32 TCGA-D6-6823-01 6 64422440 64422440 T A PHF3 Silent p.P1652P 0.25 TCGA-D6-6823-01 7 100682562 100682562 G T MUC17 Missense_Mutation p.S2622I 0.19 possibly_damaging(0.86) TCGA-D6-6823-01 7 112462082 112462082 T C C7orf60 Missense_Mutation p.H312R 0.22 deleterious(0) probably_damaging(0.995) TCGA-D6-6823-01 7 142161982 142161982 T A TRBV6-6 Missense_Mutation p.E98V 0.20 deleterious(0.04) benign(0.043) TCGA-D6-6823-01 7 142180724 142180724 A T TRBV6-5 Missense_Mutation p.D45E 0.06 tolerated(0.09) probably_damaging(0.968) TCGA-D6-6823-01 7 83119474 83119474 C G SEMA3E Missense_Mutation p.V78L 0.14 tolerated(1) benign(0.004) TCGA-D6-6823-01 8 110131311 110131311 T G TRHR Missense_Mutation p.F275C 0.09 deleterious(0.01) probably_damaging(0.92) TCGA-D6-6823-01 8 125989980 125989980 C T ZNF572 Silent p.H490H 0.09 TCGA-D6-6823-01 8 55539875 55539875 T C RP1 Missense_Mutation p.F1145L 0.04 tolerated(0.21) benign(0.022) TCGA-D6-6823-01 8 73849904 73849904 G C KCNB2 Missense_Mutation p.E772Q 0.16 tolerated_low_confidence(0.07) benign(0.008) TCGA-D6-6823-01 8 89053677 89053677 A G MMP16 3'UTR 0.47 TCGA-D6-6823-01 9 69238242 69238242 C T CBWD6 Missense_Mutation p.R217K 0.41 tolerated(0.31) benign(0.02) TCGA-D6-6823-01 9 85863354 85863354 C G FRMD3 Missense_Mutation p.E425Q 0.24 tolerated(0.5) benign(0.026) TCGA-D6-6823-01 X 29973844 29973844 G A IL1RAPL1 Silent p.S666S 0.50 TCGA-D6-6824-01 10 34673066 34673066 C T PARD3 Missense_Mutation p.R336K 0.07 tolerated(0.08) benign(0.018) TCGA-D6-6824-01 10 50574313 50574313 G - DRGX Frame_Shift_Del p.R219Afs*? 0.08 TCGA-D6-6824-01 10 70141060 70141060 T C RUFY2 Missense_Mutation p.T381A 0.08 tolerated(0.52) benign(0.012) TCGA-D6-6824-01 11 110450456 110450456 C T ARHGAP20 Missense_Mutation p.E1072K 0.04 deleterious_low_confidence(0.01) benign(0.345) TCGA-D6-6824-01 12 130831541 130831541 C A PIWIL1 Missense_Mutation p.T196N 0.09 deleterious(0.04) possibly_damaging(0.89) TCGA-D6-6824-01 13 115090169 115090169 A T CHAMP1 Silent p.S284S 0.06 TCGA-D6-6824-01 13 37399599 37399599 A C RFXAP Missense_Mutation p.Q212P 0.04 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D6-6824-01 13 39358893 39358893 C T FREM2 Silent p.I1989I 0.09 TCGA-D6-6824-01 13 53217477 53217477 A T HNRNPA1L2 Nonsense_Mutation p.R284* 0.05 TCGA-D6-6824-01 14 106622313 106622313 A T IGHV3-16 Silent p.A11A 0.06 TCGA-D6-6824-01 14 23863348 23863348 G T MYH6 Missense_Mutation p.R872S 0.10 deleterious(0) possibly_damaging(0.749) TCGA-D6-6824-01 14 52508964 52508964 C T NID2 Missense_Mutation p.D562N 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-D6-6824-01 14 73745999 73745999 G A NUMB Silent p.A410A 0.05 TCGA-D6-6824-01 15 101016321 101016321 T A CERS3 Missense_Mutation p.L193F 0.06 deleterious(0.01) possibly_damaging(0.815) TCGA-D6-6824-01 15 42434146 42434146 C T PLA2G4F 3'UTR 0.08 TCGA-D6-6824-01 15 49776562 49776562 A G FGF7 Missense_Mutation p.N149S 0.06 deleterious(0.03) benign(0.252) TCGA-D6-6824-01 15 65936825 65936825 A G SLC24A1 Missense_Mutation p.Q705R 0.25 benign(0) TCGA-D6-6824-01 15 76067930 76067930 C A RP11-24M17.5 RNA 0.07 TCGA-D6-6824-01 16 20043921 20043921 G C GPR139 Silent p.L66L 0.06 TCGA-D6-6824-01 16 56670369 56670369 C T MT1M 3'Flank 0.08 TCGA-D6-6824-01 16 87866496 87866496 G A SLC7A5 3'UTR 0.10 TCGA-D6-6824-01 17 19470127 19470127 G T SLC47A1 Missense_Mutation p.Q377H 0.08 tolerated(0.06) possibly_damaging(0.863) TCGA-D6-6824-01 17 27958126 27958126 C T SSH2 Silent p.Q1335Q 0.06 TCGA-D6-6824-01 17 43522926 43522926 T G PLEKHM1 Missense_Mutation p.H916P 0.08 tolerated(0.28) benign(0.26) TCGA-D6-6824-01 17 43522928 43522928 C A PLEKHM1 Missense_Mutation p.M915I 0.07 deleterious(0) benign(0.397) TCGA-D6-6824-01 17 73499583 73499583 G T CASKIN2 Missense_Mutation p.A569E 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-D6-6824-01 17 8243365 8243365 T C ODF4 5'UTR 0.07 TCGA-D6-6824-01 19 55048220 55048220 G C KIR3DX1 Missense_Mutation p.G263R 0.04 tolerated(0.11) possibly_damaging(0.897) TCGA-D6-6824-01 19 7709561 7709561 T C STXBP2 Missense_Mutation p.V390A 0.07 deleterious(0) possibly_damaging(0.827) TCGA-D6-6824-01 1 111742266 111742266 T C DENND2D Missense_Mutation p.I74M 0.06 deleterious(0) benign(0.317) TCGA-D6-6824-01 1 161928411 161928411 C G ATF6 Missense_Mutation p.H660Q 0.04 tolerated_low_confidence(0.13) benign(0.029) TCGA-D6-6824-01 1 225155247 225155247 A G DNAH14 Missense_Mutation p.K205E 0.08 deleterious(0.04) benign(0.327) TCGA-D6-6824-01 1 248023998 248023998 A G TRIM58 Missense_Mutation p.K167R 0.06 deleterious(0.01) benign(0.112) TCGA-D6-6824-01 1 248112599 248112599 C T OR2L8 Missense_Mutation p.S147F 0.05 deleterious(0) probably_damaging(0.98) TCGA-D6-6824-01 1 26349468 26349468 C G EXTL1 Missense_Mutation p.H111D 0.08 deleterious(0.02) possibly_damaging(0.701) TCGA-D6-6824-01 1 70339239 70339239 C T LRRC7 Intron 0.07 TCGA-D6-6824-01 1 89655859 89655859 C G GBP4 Missense_Mutation p.M353I 0.06 deleterious(0) possibly_damaging(0.868) TCGA-D6-6824-01 2 137928343 137928343 G A THSD7B Missense_Mutation p.E520K 0.06 deleterious(0.02) possibly_damaging(0.486) TCGA-D6-6824-01 2 163039967 163039967 T G FAP Missense_Mutation p.E609A 0.04 tolerated(0.11) benign(0.009) TCGA-D6-6824-01 2 87013080 87013080 G T CD8A Nonsense_Mutation p.S224* 0.04 TCGA-D6-6824-01 3 178947827 178947827 G T PIK3CA Missense_Mutation p.C901F 0.08 deleterious(0) probably_damaging(1) TCGA-D6-6824-01 3 196612189 196612189 G A SENP5 Missense_Mutation p.R46K 0.08 tolerated_low_confidence(0.15) benign(0.005) TCGA-D6-6824-01 4 120169908 120169908 A G USP53 Missense_Mutation p.I81M 0.07 tolerated(0.13) benign(0.21) TCGA-D6-6824-01 4 155278384 155278384 G C DCHS2 Missense_Mutation p.L263V 0.07 tolerated(0.51) benign(0.001) TCGA-D6-6824-01 5 140734835 140734835 T C PCDHGA4 Missense_Mutation p.L23P 0.07 tolerated_low_confidence(0.07) benign(0.02) TCGA-D6-6824-01 6 72968708 72968708 C T RIMS1 Missense_Mutation p.P983S 0.06 tolerated(0.22) benign(0.184) TCGA-D6-6824-01 7 31862847 31862847 G A PDE1C Silent p.S534S 0.07 TCGA-D6-6824-01 7 80546045 80546045 C T SEMA3C Missense_Mutation p.C18Y 0.15 tolerated(1) benign(0.037) TCGA-D6-6824-01 7 98254269 98254269 G C NPTX2 Missense_Mutation p.V227L 0.07 tolerated(0.95) benign(0.174) TCGA-D6-6824-01 8 52320759 52320759 A G PXDNL Missense_Mutation p.I1142T 0.04 deleterious(0) possibly_damaging(0.812) TCGA-D6-6824-01 9 104075140 104075140 C A LPPR1 Missense_Mutation p.L233I 0.10 deleterious(0) possibly_damaging(0.715) TCGA-D6-6824-01 9 104448991 104448991 T G GRIN3A Silent p.A397A 0.17 TCGA-D6-6824-01 9 137801651 137801651 G T FCN1 Missense_Mutation p.P325H 0.10 deleterious(0) probably_damaging(0.999) TCGA-D6-6824-01 9 40774387 40774387 G C ZNF658 Missense_Mutation p.H296Q 0.08 tolerated(0.71) benign(0.004) TCGA-D6-6824-01 X 101138797 101138797 A G ZMAT1 Silent p.H534H 0.07 TCGA-D6-6824-01 X 105280605 105280605 C T SERPINA7 Missense_Mutation p.D149N 0.06 tolerated(0.35) benign(0.033) TCGA-D6-6824-01 X 115582641 115582641 C T SLC6A14 Missense_Mutation p.S322F 0.09 deleterious(0) probably_damaging(0.999) TCGA-D6-6824-01 X 140994645 140994645 C T MAGEC1 Silent p.S485S 0.05 TCGA-D6-6824-01 X 151870027 151870027 C G MAGEA6 Missense_Mutation p.F239L 0.07 tolerated(0.06) benign(0.007) TCGA-D6-6824-01 X 53571698 53571698 T G HUWE1 Missense_Mutation p.I3692L 0.09 unknown(0) TCGA-D6-6825-01 10 129209186 129209186 G A DOCK1 Missense_Mutation p.A1455T 0.26 deleterious(0) benign(0.003) TCGA-D6-6825-01 10 20357118 20357118 A G PLXDC2 Missense_Mutation p.D164G 0.12 tolerated(0.06) benign(0.046) TCGA-D6-6825-01 10 55581501 55581501 G A PCDH15 3'UTR 0.40 TCGA-D6-6825-01 10 62647977 62647977 C T RHOBTB1 Silent p.T483T 0.17 TCGA-D6-6825-01 10 72358341 72358341 C T PRF1 Missense_Mutation p.R379Q 0.15 tolerated(0.53) benign(0.006) TCGA-D6-6825-01 11 10064502 10064502 C A SBF2 Silent p.L56L 0.22 TCGA-D6-6825-01 11 20139697 20139697 C T NAV2 Silent p.L2454L 0.16 TCGA-D6-6825-01 11 27016517 27016517 G A FIBIN Silent p.Q148Q 0.18 TCGA-D6-6825-01 11 3846632 3846632 G A PGAP2 Missense_Mutation p.D298N 0.15 deleterious(0) probably_damaging(0.925) TCGA-D6-6825-01 12 13715993 13715993 G A GRIN2B Silent p.D1393D 0.15 TCGA-D6-6825-01 12 69666987 69666987 T A CPSF6 3'UTR 0.15 TCGA-D6-6825-01 12 7289595 7289595 C A CLSTN3 Missense_Mutation p.Q367K 0.23 tolerated(0.87) benign(0.025) TCGA-D6-6825-01 12 7522012 7522012 G A CD163L1 Missense_Mutation p.A1327V 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-D6-6825-01 14 57938207 57938207 G A C14orf105 Nonsense_Mutation p.Q253* 0.07 TCGA-D6-6825-01 14 76088433 76088433 G A FLVCR2 Silent p.A227A 0.13 TCGA-D6-6825-01 15 26866602 26866602 G A GABRB3 Missense_Mutation p.T107M 0.20 deleterious(0) probably_damaging(1) TCGA-D6-6825-01 15 34105782 34105782 C A RYR3 Splice_Site p.X3501_splice 0.18 TCGA-D6-6825-01 15 41643315 41643315 G A NUSAP1 Missense_Mutation p.A146T 0.20 tolerated(0.42) benign(0.068) TCGA-D6-6825-01 16 68914511 68914511 G A TANGO6 Missense_Mutation p.R452K 0.19 deleterious(0.02) benign(0.119) TCGA-D6-6825-01 17 30771555 30771555 C G PSMD11 Missense_Mutation p.A5G 0.48 tolerated(0.38) benign(0.003) TCGA-D6-6825-01 17 30771556 30771556 G T PSMD11 Silent p.A5A 0.43 TCGA-D6-6825-01 17 48452586 48452586 C T EME1 Missense_Mutation p.S6L 0.19 tolerated_low_confidence(0.06) unknown(0) TCGA-D6-6825-01 17 57050198 57050198 A G PPM1E Silent p.E374E 0.35 TCGA-D6-6825-01 17 57158492 57158492 C T TRIM37 Missense_Mutation p.R153H 0.42 deleterious(0) probably_damaging(0.995) TCGA-D6-6825-01 17 67160232 67160232 G C ABCA10 Missense_Mutation p.L1116V 0.21 tolerated(0.09) benign(0.017) TCGA-D6-6825-01 17 71375666 71375666 G A SDK2 Silent p.Y1595Y 0.09 TCGA-D6-6825-01 17 7578369 7578369 A C TP53 Splice_Site p.X187_splice 0.41 TCGA-D6-6825-01 19 31039973 31039973 C A ZNF536 Silent p.I1149I 0.17 TCGA-D6-6825-01 19 34297787 34297787 G A KCTD15 Missense_Mutation p.G88S 0.12 deleterious(0.03) possibly_damaging(0.764) TCGA-D6-6825-01 19 38897630 38897630 C T FAM98C Silent p.H277H 0.23 TCGA-D6-6825-01 19 55435180 55435180 C T NLRP7 Silent p.K1014K 0.31 TCGA-D6-6825-01 19 56520174 56520174 G C NLRP5 Missense_Mutation p.E155Q 0.12 tolerated(0.22) benign(0.079) TCGA-D6-6825-01 19 613298 613298 C T HCN2 Silent p.F545F 0.19 TCGA-D6-6825-01 19 6374915 6374915 C G ALKBH7 Silent p.S199S 0.27 TCGA-D6-6825-01 1 10209286 10209286 C T UBE4B Missense_Mutation p.A879V 0.13 deleterious(0) possibly_damaging(0.557) TCGA-D6-6825-01 1 117311457 117311457 C T CD2 3'UTR 0.19 TCGA-D6-6825-01 1 173493986 173493986 G T SLC9C2 Missense_Mutation p.L816I 0.20 tolerated(0.06) possibly_damaging(0.827) TCGA-D6-6825-01 1 179437611 179437611 C G AXDND1 Missense_Mutation p.S611C 0.21 deleterious(0.05) possibly_damaging(0.769) TCGA-D6-6825-01 1 2451776 2451776 C A PANK4 Silent p.L228L 0.21 TCGA-D6-6825-01 1 248569358 248569361 AATT - OR2T1 Frame_Shift_Del p.N23Hfs*26 0.29 TCGA-D6-6825-01 20 17623695 17623695 C T RRBP1 Missense_Mutation p.E231K 0.24 tolerated(0.06) possibly_damaging(0.502) TCGA-D6-6825-01 20 21687260 21687260 C T PAX1 Silent p.T157T 0.19 TCGA-D6-6825-01 21 45820227 45820227 T G TRPM2 Missense_Mutation p.L765R 0.32 deleterious(0) probably_damaging(0.986) TCGA-D6-6825-01 2 141457979 141457979 C T LRP1B Silent p.R2213R 0.22 TCGA-D6-6825-01 2 165551294 165551294 G A COBLL1 Nonsense_Mutation p.Q908* 0.24 TCGA-D6-6825-01 2 170025080 170025080 G A LRP2 Silent p.G3868G 0.15 TCGA-D6-6825-01 2 208486636 208486636 G A METTL21A Silent p.I51I 0.18 TCGA-D6-6825-01 2 27248513 27248513 G A MAPRE3 Missense_Mutation p.V178M 0.21 tolerated(0.19) benign(0.007) TCGA-D6-6825-01 2 64683576 64683576 T C LGALSL Missense_Mutation p.F118L 0.17 deleterious(0) probably_damaging(1) TCGA-D6-6825-01 2 74757782 74757782 G T HTRA2 Missense_Mutation p.G182V 0.16 deleterious(0) probably_damaging(1) TCGA-D6-6825-01 2 85051144 85051144 G A TRABD2A Missense_Mutation p.R374W 0.23 tolerated(0.1) benign(0) TCGA-D6-6825-01 3 130289967 130289967 C T COL6A6 Missense_Mutation p.R903W 0.11 deleterious(0) benign(0.022) TCGA-D6-6825-01 3 140785630 140785630 C T SPSB4 Silent p.N228N 0.23 TCGA-D6-6825-01 3 14154580 14154580 G A CHCHD4 Missense_Mutation p.T92M 0.26 deleterious(0.02) probably_damaging(0.911) TCGA-D6-6825-01 3 173998386 173998386 G T NLGN1 Nonsense_Mutation p.G589* 0.10 TCGA-D6-6825-01 3 191093280 191093280 G A CCDC50 Missense_Mutation p.G293E 0.34 tolerated(0.25) possibly_damaging(0.463) TCGA-D6-6825-01 3 23631344 23631344 G A UBE2E2 3'UTR 0.38 TCGA-D6-6825-01 3 30032698 30032698 T C RBMS3 Silent p.S435S 0.21 TCGA-D6-6825-01 3 88202409 88202409 C T C3orf38 Nonsense_Mutation p.Q55* 0.17 TCGA-D6-6825-01 4 110452620 110452620 T - SEC24B Frame_Shift_Del p.H1112Ifs*2 0.21 TCGA-D6-6825-01 4 175898390 175898390 C A ADAM29 Missense_Mutation p.H572N 0.17 deleterious(0.01) possibly_damaging(0.905) TCGA-D6-6825-01 4 43022418 43022418 C G GRXCR1 Missense_Mutation p.D225E 0.18 tolerated(0.43) probably_damaging(0.991) TCGA-D6-6825-01 4 54362403 54362403 G A LNX1 Silent p.S379S 0.20 TCGA-D6-6825-01 4 71472228 71472228 C - AMBN Frame_Shift_Del p.S377Afs*10 0.20 TCGA-D6-6825-01 5 115831982 115831982 C T SEMA6A Missense_Mutation p.D103N 0.15 deleterious(0.01) probably_damaging(0.947) TCGA-D6-6825-01 5 140595589 140595589 G T PCDHB13 Nonsense_Mutation p.E632* 0.14 TCGA-D6-6825-01 5 154214197 154214197 G A FAXDC2 Missense_Mutation p.L78F 0.26 tolerated(0.06) benign(0.259) TCGA-D6-6825-01 5 156592924 156592924 C T FAM71B Missense_Mutation p.V86I 0.19 tolerated(0.07) possibly_damaging(0.483) TCGA-D6-6825-01 6 132204896 132204896 A T ENPP1 Missense_Mutation p.M765L 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-D6-6825-01 6 148840732 148840732 C T SASH1 Silent p.S304S 0.21 TCGA-D6-6825-01 6 152698022 152698022 G C SYNE1 Missense_Mutation p.A3012G 0.17 benign(0.242) TCGA-D6-6825-01 6 31698702 31698702 C T CLIC1 Missense_Mutation p.A215T 0.18 tolerated(0.14) benign(0.003) TCGA-D6-6825-01 6 97677102 97677102 G C MMS22L Silent p.L569L 0.22 TCGA-D6-6825-01 7 100679245 100679245 A G MUC17 Silent p.L1516L 0.19 TCGA-D6-6825-01 7 121608117 121608117 A G PTPRZ1 Silent p.K79K 0.25 TCGA-D6-6825-01 7 141619469 141619469 C T OR9A4 Missense_Mutation p.T265M 0.14 tolerated(0.06) possibly_damaging(0.532) TCGA-D6-6825-01 7 158824757 158824757 T C VIPR2 Missense_Mutation p.R325G 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6825-01 7 38289168 38289168 G T TRGC2 Missense_Mutation p.Q3K 0.22 tolerated(0.56) benign(0) TCGA-D6-6825-01 7 38835131 38835131 C A VPS41 Missense_Mutation p.M217I 0.15 tolerated(0.3) benign(0.003) TCGA-D6-6825-01 7 63982197 63982197 T C ZNF680 Missense_Mutation p.H312R 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D6-6825-01 7 8095132 8095132 C T GLCCI1 Missense_Mutation p.R256C 0.11 deleterious(0.03) possibly_damaging(0.804) TCGA-D6-6825-01 8 121239492 121239492 A G COL14A1 Missense_Mutation p.I680V 0.19 tolerated(0.07) benign(0.012) TCGA-D6-6825-01 8 124340642 124340642 C T ATAD2 Missense_Mutation p.G1219E 0.22 tolerated(0.29) benign(0.001) TCGA-D6-6825-01 8 128750945 128750945 C T MYC Missense_Mutation p.S161L 0.31 deleterious(0) possibly_damaging(0.888) TCGA-D6-6825-01 8 77616511 77616511 G T ZFHX4 Missense_Mutation p.G63V 0.21 probably_damaging(0.979) TCGA-D6-6825-01 9 124091523 124091523 A G GSN Missense_Mutation p.E683G 0.45 deleterious(0) probably_damaging(0.988) TCGA-D6-6825-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.41 TCGA-D6-6825-01 9 98229683 98229683 C G PTCH1 Missense_Mutation p.G759R 0.37 deleterious(0.01) possibly_damaging(0.824) TCGA-D6-6825-01 X 18323203 18323203 C T SCML2 Missense_Mutation p.D207N 0.41 deleterious(0) probably_damaging(1) TCGA-D6-6825-01 X 23411904 23411904 T G PTCHD1 Missense_Mutation p.L757V 0.46 deleterious(0.01) probably_damaging(0.994) TCGA-D6-6826-01 10 104128578 104128578 C G GBF1 Missense_Mutation p.L987V 0.14 deleterious(0) probably_damaging(0.987) TCGA-D6-6826-01 10 115987042 115987042 G C TDRD1 Missense_Mutation p.Q1129H 0.20 tolerated(0.12) possibly_damaging(0.891) TCGA-D6-6826-01 11 1078277 1078277 C G MUC2 Missense_Mutation p.F188L 0.16 benign(0.113) TCGA-D6-6826-01 11 5248168 5248168 G A HBB Silent p.A28A 0.20 TCGA-D6-6826-01 11 55653267 55653267 C G TRIM51 Missense_Mutation p.H121Q 0.14 deleterious(0) probably_damaging(1) TCGA-D6-6826-01 11 57971290 57971290 C T OR1S2 Missense_Mutation p.V122I 0.29 tolerated(0.47) benign(0.005) TCGA-D6-6826-01 11 60161321 60161321 G A MS4A7 Missense_Mutation p.R237Q 0.17 deleterious_low_confidence(0.02) benign(0.002) TCGA-D6-6826-01 11 64883409 64883409 G A TM7SF2 Missense_Mutation p.A381T 0.23 tolerated(0.22) benign(0.327) TCGA-D6-6826-01 11 65481258 65481258 G A KAT5 Missense_Mutation p.R210H 0.20 tolerated(0.13) benign(0.022) TCGA-D6-6826-01 11 67262422 67262422 G A PITPNM1 Silent p.I879I 0.11 TCGA-D6-6826-01 12 107279729 107279729 C T RIC8B Missense_Mutation p.T500M 0.14 deleterious(0) possibly_damaging(0.475) TCGA-D6-6826-01 12 110238456 110238456 G A TRPV4 Nonsense_Mutation p.Q274* 0.11 TCGA-D6-6826-01 12 110780124 110780124 C G ATP2A2 Missense_Mutation p.S730C 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-D6-6826-01 12 122018854 122018854 C A KDM2B 5'UTR 0.21 TCGA-D6-6826-01 12 46243822 46243823 - C ARID2 Frame_Shift_Ins p.H641Sfs*66 0.23 TCGA-D6-6826-01 12 4702231 4702231 C T DYRK4 Missense_Mutation p.A61V 0.20 deleterious(0.02) benign(0.03) TCGA-D6-6826-01 12 57058264 57058264 T G PTGES3 Nonstop_Mutation p.*161Sext*9 0.20 TCGA-D6-6826-01 12 83289957 83289957 G C TMTC2 Missense_Mutation p.G339R 0.12 tolerated(0.09) benign(0.374) TCGA-D6-6826-01 13 114817592 114817592 C T RASA3 Missense_Mutation p.R71Q 0.19 deleterious(0) probably_damaging(0.958) TCGA-D6-6826-01 13 26789040 26789040 G A RNF6 Nonsense_Mutation p.Q327* 0.23 TCGA-D6-6826-01 13 46946524 46946524 C A KIAA0226L Silent p.S29S 0.18 TCGA-D6-6826-01 13 99087939 99087939 C A FARP1 Missense_Mutation p.D751E 0.29 tolerated(0.83) benign(0.255) TCGA-D6-6826-01 13 99171636 99171636 C T STK24 Missense_Mutation p.R57Q 0.18 tolerated(0.06) benign(0.402) TCGA-D6-6826-01 14 23512342 23512342 C G PSMB11 3'UTR 0.17 TCGA-D6-6826-01 14 32563530 32563530 G A ARHGAP5 Missense_Mutation p.D1219N 0.14 tolerated(0.18) benign(0.15) TCGA-D6-6826-01 14 65406430 65406430 C T GPX2 Missense_Mutation p.A117T 0.21 tolerated(0.7) benign(0.031) TCGA-D6-6826-01 14 92588014 92588014 G T NDUFB1 Silent p.L36L 0.14 TCGA-D6-6826-01 14 93118383 93118383 C T RIN3 Missense_Mutation p.P330L 0.40 deleterious(0.04) unknown(0) TCGA-D6-6826-01 15 41120651 41120651 C G PPP1R14D Silent p.R63R 0.10 TCGA-D6-6826-01 15 42173394 42173394 C T SPTBN5 Silent p.R832R 0.15 TCGA-D6-6826-01 15 43658483 43658483 G T ZSCAN29 Missense_Mutation p.H349Q 0.25 tolerated(0.22) benign(0.005) TCGA-D6-6826-01 15 60745913 60745914 TC - NARG2 Frame_Shift_Del p.R338Kfs*6 0.14 TCGA-D6-6826-01 16 10274133 10274135 CGT - GRIN2A In_Frame_Del p.D45del 0.33 TCGA-D6-6826-01 16 1642226 1642226 C T IFT140 Silent p.L195L 0.13 TCGA-D6-6826-01 16 2282237 2282237 G A E4F1 Missense_Mutation p.E161K 0.13 deleterious(0.04) possibly_damaging(0.522) TCGA-D6-6826-01 16 2287938 2287938 C T DNASE1L2 Silent p.G254G 0.21 TCGA-D6-6826-01 16 24372924 24372924 C A CACNG3 Silent p.R230R 0.21 TCGA-D6-6826-01 16 2514586 2514586 G C C16orf59 Missense_Mutation p.A407P 0.16 deleterious(0.05) possibly_damaging(0.607) TCGA-D6-6826-01 16 57608852 57608852 C T GPR114 Missense_Mutation p.A445V 0.21 tolerated(0.23) benign(0.013) TCGA-D6-6826-01 17 67178387 67178387 A G ABCA10 Silent p.C892C 0.15 TCGA-D6-6826-01 17 7578412 7578412 A C TP53 Missense_Mutation p.V173G 0.47 deleterious(0) probably_damaging(1) TCGA-D6-6826-01 17 7699949 7699949 C G DNAH2 Missense_Mutation p.F2614L 0.24 probably_damaging(0.999) TCGA-D6-6826-01 17 7983127 7983127 G A ALOX12B Missense_Mutation p.P296L 0.18 deleterious(0.01) benign(0.08) TCGA-D6-6826-01 18 65180897 65180897 C A DSEL Missense_Mutation p.A327S 0.17 tolerated(0.29) benign(0.094) TCGA-D6-6826-01 19 17337542 17337542 C T OCEL1 Missense_Mutation p.A37V 0.70 tolerated(0.12) benign(0) TCGA-D6-6826-01 19 44376738 44376738 C G ZNF404 Missense_Mutation p.R543T 0.24 deleterious(0.02) benign(0.41) TCGA-D6-6826-01 19 46190835 46190835 C G SNRPD2 Silent p.R111R 0.17 TCGA-D6-6826-01 1 113209755 113209758 ACTA - CAPZA1 Frame_Shift_Del p.T217Ffs*15 0.17 TCGA-D6-6826-01 1 12942213 12942213 T A PRAMEF4 Missense_Mutation p.N113Y 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-D6-6826-01 1 145498680 145498680 C T LIX1L Nonsense_Mutation p.R306* 0.15 TCGA-D6-6826-01 1 152282437 152282437 C G FLG Missense_Mutation p.S1642T 0.13 benign(0.153) TCGA-D6-6826-01 1 153945906 153945906 C T CREB3L4 Missense_Mutation p.S288F 0.15 deleterious(0) probably_damaging(1) TCGA-D6-6826-01 1 157737023 157737023 G C FCRL2 Nonsense_Mutation p.S387* 0.15 TCGA-D6-6826-01 1 158819061 158819061 G A MNDA 3'UTR 0.38 TCGA-D6-6826-01 1 166991064 166991064 G C MAEL Missense_Mutation p.G426A 0.09 tolerated_low_confidence(0.11) possibly_damaging(0.459) TCGA-D6-6826-01 1 18809462 18809462 G A KLHDC7A Missense_Mutation p.G663R 0.28 deleterious(0.01) possibly_damaging(0.885) TCGA-D6-6826-01 1 229568585 229568585 C T ACTA1 Missense_Mutation p.D58N 0.19 deleterious_low_confidence(0.05) benign(0) TCGA-D6-6826-01 1 248551301 248551301 G A OR2T6 Missense_Mutation p.R131H 0.39 tolerated(0.36) benign(0.005) TCGA-D6-6826-01 1 27690468 27690468 G A MAP3K6 Silent p.S268S 0.29 TCGA-D6-6826-01 1 55148401 55148401 G T MROH7 Silent p.L818L 0.31 TCGA-D6-6826-01 1 70502126 70502126 G T LRRC7 Splice_Site p.X665_splice 0.30 TCGA-D6-6826-01 1 78392542 78392542 G C NEXN Missense_Mutation p.E277Q 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-D6-6826-01 1 98039345 98039345 G A DPYD Missense_Mutation p.A437V 0.14 deleterious(0) probably_damaging(0.968) TCGA-D6-6826-01 20 57485448 57485448 G A GNAS Missense_Mutation p.E987K 0.16 tolerated(0.12) probably_damaging(0.993) TCGA-D6-6826-01 20 61458124 61458124 C A COL9A3 Silent p.P248P 0.09 TCGA-D6-6826-01 20 61637638 61637638 G A BHLHE23 Silent p.A147A 0.17 TCGA-D6-6826-01 22 22314743 22314743 A C TOP3B Missense_Mutation p.L535R 0.10 deleterious(0) probably_damaging(0.998) TCGA-D6-6826-01 22 22869426 22869426 C G ZNF280A Missense_Mutation p.D177H 0.12 deleterious(0) benign(0.436) TCGA-D6-6826-01 22 29708004 29708004 G A GAS2L1 3'UTR 0.19 TCGA-D6-6826-01 2 170058335 170058335 C T LRP2 Missense_Mutation p.R2752Q 0.21 probably_damaging(0.943) TCGA-D6-6826-01 2 179542570 179542570 T C TTN Missense_Mutation p.I11357V 0.15 TCGA-D6-6826-01 2 207171531 207171531 C T ZDBF2 Missense_Mutation p.S760L 0.21 deleterious(0) possibly_damaging(0.693) TCGA-D6-6826-01 2 215914369 215914369 A G ABCA12 Missense_Mutation p.L225P 0.15 deleterious(0) possibly_damaging(0.701) TCGA-D6-6826-01 2 26680903 26680903 G A OTOF 3'UTR 0.24 TCGA-D6-6826-01 2 69302734 69302734 C T ANTXR1 Nonsense_Mutation p.R169* 0.11 TCGA-D6-6826-01 2 89156960 89156960 C T IGKC Missense_Mutation p.E80K 0.11 tolerated(0.73) benign(0.002) TCGA-D6-6826-01 3 108271206 108271206 T A KIAA1524 Missense_Mutation p.T808S 0.24 deleterious(0.01) benign(0.003) TCGA-D6-6826-01 3 183695333 183695333 T C ABCC5 Missense_Mutation p.E459G 0.29 deleterious(0) probably_damaging(0.973) TCGA-D6-6826-01 3 194118222 194118222 G A GP5 Missense_Mutation p.H264Y 0.15 tolerated(0.12) benign(0.011) TCGA-D6-6826-01 3 49947692 49947692 G A MON1A Silent p.F510F 0.22 TCGA-D6-6826-01 4 113352354 113352354 C T ALPK1 Nonsense_Mutation p.Q551* 0.10 TCGA-D6-6826-01 4 146807275 146807275 C A ZNF827 Missense_Mutation p.Q434H 0.29 tolerated(0.1) probably_damaging(0.992) TCGA-D6-6826-01 4 155157872 155157872 T A DCHS2 Silent p.P2189P 0.27 TCGA-D6-6826-01 4 155157874 155157874 G A DCHS2 Missense_Mutation p.P2189S 0.30 tolerated(0.27) possibly_damaging(0.794) TCGA-D6-6826-01 4 162307346 162307346 G A FSTL5 Silent p.V699V 0.16 TCGA-D6-6826-01 4 169215016 169215016 G A DDX60 Silent p.C268C 0.16 TCGA-D6-6826-01 4 42403311 42403311 G T SHISA3 Missense_Mutation p.C187F 0.25 deleterious(0) possibly_damaging(0.454) TCGA-D6-6826-01 4 72121007 72121007 G T SLC4A4 Missense_Mutation p.K48N 0.24 tolerated(0.39) benign(0.083) TCGA-D6-6826-01 4 77003501 77003501 C T ART3 Silent p.L198L 0.24 TCGA-D6-6826-01 4 96222864 96222864 C T UNC5C Missense_Mutation p.R128H 0.31 deleterious(0) probably_damaging(0.987) TCGA-D6-6826-01 5 102342680 102342680 C T PAM Missense_Mutation p.S660L 0.16 deleterious(0) probably_damaging(0.993) TCGA-D6-6826-01 5 140871168 140871168 C A PCDHGC5 Missense_Mutation p.F787L 0.19 tolerated(0.17) benign(0.004) TCGA-D6-6826-01 5 153855399 153855399 C T HAND1 Silent p.P205P 0.19 TCGA-D6-6826-01 5 40798208 40798208 A G PRKAA1 Silent p.I28I 0.18 TCGA-D6-6826-01 5 78379594 78379594 A G BHMT2 Missense_Mutation p.R309G 0.15 deleterious(0.04) probably_damaging(0.971) TCGA-D6-6826-01 5 79028659 79028659 T C CMYA5 Silent p.S1357S 0.22 TCGA-D6-6826-01 5 908529 908529 C T TRIP13 Silent p.A273A 0.14 TCGA-D6-6826-01 6 26509261 26509261 G C BTN1A1 Missense_Mutation p.E480D 0.20 tolerated(0.2) benign(0.009) TCGA-D6-6826-01 6 30866738 30866738 C T DDR1 Missense_Mutation p.A848V 0.21 deleterious(0) benign(0.002) TCGA-D6-6826-01 6 49703279 49703279 T C CRISP3 Missense_Mutation p.N95S 0.16 deleterious(0) benign(0.046) TCGA-D6-6826-01 6 85472362 85472362 G C TBX18 Missense_Mutation p.L133V 0.14 tolerated(0.43) benign(0) TCGA-D6-6826-01 7 11514030 11514030 C A THSD7A Missense_Mutation p.C728F 0.18 deleterious(0) probably_damaging(0.996) TCGA-D6-6826-01 7 149489170 149489170 C T SSPO RNA 0.16 TCGA-D6-6826-01 7 158325491 158325491 C T PTPRN2 Intron 0.18 TCGA-D6-6826-01 7 29035453 29035453 G C CPVL Missense_Mutation p.L456V 0.10 tolerated(0.23) benign(0.441) TCGA-D6-6826-01 7 30791838 30791838 C T INMT Silent p.Y24Y 0.33 TCGA-D6-6826-01 7 33028259 33028259 G T FKBP9 Missense_Mutation p.G345V 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-D6-6826-01 7 5780720 5780720 C G RNF216 Missense_Mutation p.E310Q 0.11 tolerated(1) possibly_damaging(0.514) TCGA-D6-6826-01 7 76062842 76062842 C G ZP3 Missense_Mutation p.H197Q 0.11 deleterious(0.02) possibly_damaging(0.457) TCGA-D6-6826-01 7 87035604 87035604 G A ABCB4 Silent p.H1169H 0.10 TCGA-D6-6826-01 7 99711874 99711874 G A TAF6 Missense_Mutation p.R24W 0.08 deleterious_low_confidence(0) benign(0.042) TCGA-D6-6826-01 8 131127878 131127878 T A ASAP1 Missense_Mutation p.D723V 0.23 deleterious(0) probably_damaging(0.994) TCGA-D6-6826-01 8 139165105 139165105 C T FAM135B Missense_Mutation p.R538K 0.08 tolerated(0.84) benign(0.004) TCGA-D6-6826-01 8 76476246 76476246 G T HNF4G Missense_Mutation p.G418V 0.12 tolerated(0.12) benign(0.007) TCGA-D6-6826-01 8 94934378 94934378 C T PDP1 Missense_Mutation p.H56Y 0.09 tolerated_low_confidence(0.22) possibly_damaging(0.775) TCGA-D6-6826-01 9 114184479 114184479 G A KIAA0368 Missense_Mutation p.R601W 0.19 deleterious(0) probably_damaging(0.924) TCGA-D6-6826-01 X 100349902 100349902 C G TMEM35 Missense_Mutation p.S154C 0.13 tolerated(0.1) benign(0) TCGA-D6-6826-01 X 147106392 147106392 G A FMR1NB Missense_Mutation p.A214T 0.12 tolerated(0.11) possibly_damaging(0.682) TCGA-D6-6826-01 X 148794917 148794917 T A MAGEA11 Splice_Site p.X32_splice 0.28 TCGA-D6-6826-01 X 24228854 24228854 G A ZFX Silent p.T593T 0.09 TCGA-D6-6826-01 X 2833637 2833637 G T ARSD Silent p.G320G 0.10 TCGA-D6-6826-01 X 47919827 47919827 A T ZNF630 Splice_Site p.X80_splice 0.11 TCGA-D6-6826-01 X 73042820 73042820 C G XIST RNA 0.10 TCGA-D6-6827-01 10 48429292 48429292 G A GDF10 Silent p.R198R 0.45 TCGA-D6-6827-01 12 52387841 52387841 C T ACVR1B Missense_Mutation p.R530C 0.21 deleterious(0) probably_damaging(0.999) TCGA-D6-6827-01 16 50815182 50815182 A T CYLD Missense_Mutation p.D515V 0.57 deleterious(0) probably_damaging(0.999) TCGA-D6-6827-01 17 11774927 11774927 G A DNAH9 Missense_Mutation p.A3356T 0.36 benign(0.323) TCGA-D6-6827-01 19 14507206 14507206 C T CD97 Silent p.C133C 0.07 TCGA-D6-6827-01 1 197036317 197036317 T C F13B Missense_Mutation p.I13V 0.10 tolerated(0.55) benign(0.005) TCGA-D6-6827-01 22 32554980 32554980 T C C22orf42 Missense_Mutation p.M75V 0.30 tolerated_low_confidence(0.2) benign(0.043) TCGA-D6-6827-01 22 38370169 38370180 GGGGTGGTTGGA - SOX10 In_Frame_Del p.P242_P245del 0.26 TCGA-D6-6827-01 2 216262570 216262570 A C FN1 Missense_Mutation p.L1117R 0.31 deleterious(0) probably_damaging(1) TCGA-D6-6827-01 2 238275793 238275793 C A COL6A3 Silent p.G1679G 0.45 TCGA-D6-6827-01 4 75681110 75681110 C T BTC Silent p.G80G 0.35 TCGA-D6-6827-01 6 136599279 136599279 A G BCLAF1 Missense_Mutation p.M247T 0.15 tolerated_low_confidence(0.19) benign(0.055) TCGA-D6-6827-01 9 13219563 13219563 A T MPDZ Missense_Mutation p.L361M 0.40 tolerated(0.68) benign(0) TCGA-D6-6827-01 9 14125721 14125722 AC - NFIB Frame_Shift_Del p.L323Ffs*84 0.30 TCGA-D6-6827-01 X 153040467 153040468 - G PLXNB3 Frame_Shift_Ins p.P1380Afs*73 0.39 TCGA-D6-6827-01 X 48687628 48687628 G A ERAS Missense_Mutation p.R32H 0.23 tolerated(0.54) benign(0.026) TCGA-D6-8568-01 10 104158493 104158493 C A NFKB2 Intron 0.13 TCGA-D6-8568-01 10 124390621 124390621 G T DMBT1 Missense_Mutation p.G1928V 0.13 deleterious(0) probably_damaging(0.992) TCGA-D6-8568-01 10 23297809 23297809 C G ARMC3 Missense_Mutation p.S665C 0.28 deleterious(0.02) possibly_damaging(0.88) TCGA-D6-8568-01 10 31815878 31815878 G T ZEB1 Missense_Mutation p.D1022Y 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-D6-8568-01 10 75609032 75609032 T C CAMK2G Missense_Mutation p.H134R 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D6-8568-01 10 90433492 90433492 G T LIPF Splice_Site p.X282_splice 0.19 TCGA-D6-8568-01 11 130278481 130278481 G A ADAMTS8 Silent p.G659G 0.06 TCGA-D6-8568-01 11 22294525 22294525 T A ANO5 Missense_Mutation p.V742D 0.21 deleterious(0) probably_damaging(0.966) TCGA-D6-8568-01 11 36614687 36614687 A G RAG2 Silent p.Y344Y 0.26 TCGA-D6-8568-01 11 5067988 5067988 C A OR52J3 Missense_Mutation p.T78N 0.24 deleterious(0) possibly_damaging(0.461) TCGA-D6-8568-01 11 60703894 60703894 A T TMEM132A Missense_Mutation p.I864F 0.18 deleterious(0) probably_damaging(0.998) TCGA-D6-8568-01 11 63668492 63668494 ACA - MARK2 In_Frame_Del p.N352del 0.14 TCGA-D6-8568-01 11 69462817 69462817 C T CCND1 Silent p.A210A 0.12 TCGA-D6-8568-01 11 75379336 75379336 G T MAP6 Missense_Mutation p.P27T 0.16 deleterious(0) probably_damaging(0.999) TCGA-D6-8568-01 11 86056626 86056626 G A C11orf73 Nonsense_Mutation p.W180* 0.08 TCGA-D6-8568-01 12 39716680 39716680 C G KIF21A Missense_Mutation p.R1154P 0.19 deleterious(0) possibly_damaging(0.852) TCGA-D6-8568-01 12 49433280 49433280 C A KMT2D Nonsense_Mutation p.E2723* 0.11 TCGA-D6-8568-01 12 51865171 51865171 T C SLC4A8 Missense_Mutation p.C587R 0.19 tolerated(0.76) benign(0.047) TCGA-D6-8568-01 12 52163651 52163651 G A SCN8A Splice_Site p.X1125_splice 0.25 TCGA-D6-8568-01 12 52884359 52884359 C T KRT6A Silent p.Q357Q 0.19 TCGA-D6-8568-01 12 57500358 57500358 G C STAT6 Missense_Mutation p.L162V 0.21 tolerated(0.29) benign(0.42) TCGA-D6-8568-01 12 64536247 64536247 G A SRGAP1 Missense_Mutation p.R1018K 0.23 tolerated_low_confidence(0.39) benign(0.001) TCGA-D6-8568-01 12 69145934 69145934 A T SLC35E3 Missense_Mutation p.E212D 0.20 tolerated(0.24) benign(0.014) TCGA-D6-8568-01 12 70946777 70946777 G A PTPRB Nonsense_Mutation p.Q1723* 0.14 TCGA-D6-8568-01 13 79213140 79213140 G A RNF219 Nonsense_Mutation p.Q123* 0.22 TCGA-D6-8568-01 14 100705835 100705835 C G YY1 Missense_Mutation p.A85G 0.40 deleterious(0) probably_damaging(0.971) TCGA-D6-8568-01 14 24886020 24886020 G A NYNRIN Missense_Mutation p.V1689I 0.16 deleterious_low_confidence(0.04) probably_damaging(0.99) TCGA-D6-8568-01 14 55169180 55169180 C T SAMD4A Silent p.C199C 0.36 TCGA-D6-8568-01 14 56233139 56233139 C T RP11-813I20.2 Intron 0.22 TCGA-D6-8568-01 14 57857969 57857969 C G NAA30 Silent p.A98A 0.12 TCGA-D6-8568-01 14 70497029 70497029 C T SMOC1 3'UTR 0.21 TCGA-D6-8568-01 14 77745121 77745121 G C POMT2 Silent p.L661L 0.37 TCGA-D6-8568-01 15 40494877 40494878 TG - BUB1B Frame_Shift_Del p.P575Rfs*4 0.14 TCGA-D6-8568-01 15 63881213 63881213 G A USP3 Intron 0.21 TCGA-D6-8568-01 16 22269984 22269984 C T EEF2K Missense_Mutation p.A400V 0.12 tolerated(0.52) benign(0.011) TCGA-D6-8568-01 16 396885 396885 C A AXIN1 Silent p.G47G 0.16 TCGA-D6-8568-01 16 66977254 66977254 G A CES2 Nonsense_Mutation p.W555* 0.39 TCGA-D6-8568-01 16 67424190 67424190 C T TPPP3 Missense_Mutation p.D140N 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-D6-8568-01 16 89869667 89869667 C T FANCA Silent p.Q264Q 0.13 TCGA-D6-8568-01 16 8998332 8998332 C T USP7 Missense_Mutation p.R555Q 0.16 deleterious(0) probably_damaging(0.97) TCGA-D6-8568-01 17 13980128 13980128 A G COX10 Missense_Mutation p.E85G 0.20 deleterious(0.03) benign(0.071) TCGA-D6-8568-01 17 17045999 17045999 G C MPRIP Missense_Mutation p.E319Q 0.12 deleterious(0.03) probably_damaging(0.986) TCGA-D6-8568-01 17 36483148 36483148 C T GPR179 Missense_Mutation p.E2102K 0.22 tolerated(0.4) benign(0.059) TCGA-D6-8568-01 17 44127899 44127899 C T KANSL1 Missense_Mutation p.D674N 0.20 deleterious(0) probably_damaging(0.998) TCGA-D6-8568-01 17 4849956 4849957 - G PFN1 Frame_Shift_Ins p.T98Hfs*10 0.17 TCGA-D6-8568-01 17 7578443 7578443 A G TP53 Missense_Mutation p.Y163H 0.37 deleterious(0) probably_damaging(0.999) TCGA-D6-8568-01 18 5892029 5892029 C T TMEM200C Missense_Mutation p.A12T 0.33 deleterious(0) probably_damaging(0.959) TCGA-D6-8568-01 18 64172441 64172441 C T CDH19 Missense_Mutation p.D643N 0.14 deleterious(0) probably_damaging(0.943) TCGA-D6-8568-01 19 14640495 14640495 C A TECR 5'UTR 0.16 TCGA-D6-8568-01 19 19221647 19221647 G T SLC25A42 Missense_Mutation p.D307Y 0.12 deleterious(0) probably_damaging(1) TCGA-D6-8568-01 19 23870003 23870003 G A ZNF675 5'UTR 0.14 TCGA-D6-8568-01 19 23870004 23870004 C A ZNF675 5'UTR 0.16 TCGA-D6-8568-01 19 32845186 32845186 A G ZNF507 Missense_Mutation p.R484G 0.19 deleterious(0) possibly_damaging(0.879) TCGA-D6-8568-01 19 3526180 3526181 - G FZR1 Frame_Shift_Ins 0.13 TCGA-D6-8568-01 19 375967 375967 C T THEG Missense_Mutation p.G2R 0.08 deleterious(0) probably_damaging(0.924) TCGA-D6-8568-01 19 40895722 40895722 G A HIPK4 Missense_Mutation p.R30W 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-D6-8568-01 19 40899910 40899910 G T PRX Missense_Mutation p.P1450Q 0.17 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-D6-8568-01 19 44377679 44377679 G C ZNF404 Missense_Mutation p.H229Q 0.18 tolerated(1) possibly_damaging(0.602) TCGA-D6-8568-01 19 4446697 4446697 G A UBXN6 Silent p.Y240Y 0.25 TCGA-D6-8568-01 19 55286879 55286879 G A KIR2DL1 Silent p.K211K 0.04 TCGA-D6-8568-01 19 57326712 57326712 C A PEG3 Missense_Mutation p.C1033F 0.29 tolerated(0.6) benign(0.008) TCGA-D6-8568-01 19 58005537 58005537 C G ZNF419 3'UTR 0.17 TCGA-D6-8568-01 1 10093645 10093645 C T UBE4B 5'Flank 0.18 TCGA-D6-8568-01 1 110607501 110607501 G A ALX3 Missense_Mutation p.A101V 0.12 deleterious_low_confidence(0.03) benign(0.003) TCGA-D6-8568-01 1 152059535 152059535 G A TCHHL1 Missense_Mutation p.T208I 0.14 tolerated(0.1) benign(0.11) TCGA-D6-8568-01 1 165859553 165859554 - G UCK2 Frame_Shift_Ins p.Q72Afs*13 0.19 TCGA-D6-8568-01 1 193045125 193045125 A G TROVE2 Silent p.R252R 0.20 TCGA-D6-8568-01 1 219366442 219366442 A G LYPLAL1 Silent p.K70K 0.21 TCGA-D6-8568-01 1 227842412 227842412 A C ZNF678 Missense_Mutation p.K154T 0.27 deleterious(0.03) possibly_damaging(0.855) TCGA-D6-8568-01 1 26190204 26190204 A T PAQR7 Missense_Mutation p.W43R 0.19 tolerated(1) benign(0.002) TCGA-D6-8568-01 1 26372420 26372420 G A SLC30A2 5'UTR 0.13 TCGA-D6-8568-01 1 43637223 43637223 C T EBNA1BP2 Missense_Mutation p.E139K 0.13 tolerated(0.59) benign(0.002) TCGA-D6-8568-01 1 43739055 43739055 G A TMEM125 3'UTR 0.13 TCGA-D6-8568-01 1 45288991 45288991 G A PTCH2 Missense_Mutation p.P1061S 0.24 deleterious(0) probably_damaging(0.99) TCGA-D6-8568-01 1 55614214 55614214 T A USP24 Silent p.V630V 0.20 TCGA-D6-8568-01 1 79403904 79403904 C T ELTD1 Missense_Mutation p.D153N 0.15 tolerated(0.46) benign(0.005) TCGA-D6-8568-01 1 92613293 92613293 A - BTBD8 Frame_Shift_Del p.I358Yfs*13 0.25 TCGA-D6-8568-01 20 14306847 14306847 A G FLRT3 Silent p.L436L 0.19 TCGA-D6-8568-01 20 3729034 3729034 T G HSPA12B Silent p.R282R 0.19 TCGA-D6-8568-01 20 44751275 44751275 G A CD40 Missense_Mutation p.G95S 0.15 deleterious(0) probably_damaging(1) TCGA-D6-8568-01 21 38639661 38639661 C A DSCR3 5'UTR 0.19 TCGA-D6-8568-01 21 42080673 42080673 C A DSCAM Missense_Mutation p.S23I 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-D6-8568-01 22 26995540 26995540 G C CRYBB1 Missense_Mutation p.Q225E 0.22 deleterious(0) probably_damaging(0.909) TCGA-D6-8568-01 22 42335078 42335078 G - CENPM Frame_Shift_Del p.S176Pfs*28 0.09 TCGA-D6-8568-01 2 11332404 11332404 C T ROCK2 Missense_Mutation p.V1345M 0.04 tolerated(0.22) benign(0.089) TCGA-D6-8568-01 2 170493868 170493868 A C PPIG Missense_Mutation p.E700D 0.21 deleterious_low_confidence(0) unknown(0) TCGA-D6-8568-01 2 172928539 172928539 C T METAP1D Missense_Mutation p.A100V 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-D6-8568-01 2 179542634 179542634 T A TTN Missense_Mutation p.K11335N 0.31 TCGA-D6-8568-01 2 54176347 54176347 C A PSME4 Missense_Mutation p.V106L 0.20 tolerated(0.33) benign(0.062) TCGA-D6-8568-01 2 77745758 77745758 C T LRRTM4 Missense_Mutation p.A413T 0.20 tolerated(0.67) benign(0.001) TCGA-D6-8568-01 2 80530401 80530401 G T LRRTM1 Missense_Mutation p.Q182K 0.20 deleterious(0.02) probably_damaging(0.973) TCGA-D6-8568-01 2 85536400 85536401 - CAGC TCF7L1 Frame_Shift_Ins p.S531Lfs*71 0.22 TCGA-D6-8568-01 3 130368004 130368004 G A COL6A6 Silent p.K1777K 0.21 TCGA-D6-8568-01 3 154146466 154146466 C A GPR149 Missense_Mutation p.L313F 0.16 deleterious(0.04) benign(0.424) TCGA-D6-8568-01 3 196388110 196388110 C T NRROS Silent p.F532F 0.15 TCGA-D6-8568-01 3 196435551 196435551 G A CEP19 5'UTR 0.13 TCGA-D6-8568-01 3 39230516 39230516 G T XIRP1 Missense_Mutation p.Q141K 0.15 tolerated(0.26) benign(0.007) TCGA-D6-8568-01 3 49569008 49569018 CTCCTCCAGTC - DAG1 Frame_Shift_Del p.A355Efs*82 0.25 TCGA-D6-8568-01 3 52712550 52712550 G A PBRM1 Missense_Mutation p.L68F 0.23 deleterious(0.03) possibly_damaging(0.869) TCGA-D6-8568-01 3 93624662 93624662 A T PROS1 Silent p.G189G 0.13 TCGA-D6-8568-01 3 97852173 97852173 T C OR5H1 Missense_Mutation p.I211T 0.21 deleterious(0) possibly_damaging(0.457) TCGA-D6-8568-01 4 141484647 141484647 A C UCP1 Missense_Mutation p.I117M 0.16 deleterious(0.01) possibly_damaging(0.447) TCGA-D6-8568-01 4 148886186 148886186 C G ARHGAP10 Missense_Mutation p.P488A 0.23 tolerated(0.14) probably_damaging(0.998) TCGA-D6-8568-01 4 57843655 57843655 C G NOA1 Missense_Mutation p.E33Q 0.16 tolerated_low_confidence(0.33) benign(0.001) TCGA-D6-8568-01 4 95206114 95206114 A T SMARCAD1 Missense_Mutation p.E973D 0.14 tolerated(0.2) benign(0.051) TCGA-D6-8568-01 5 115350182 115350182 C T AQPEP Missense_Mutation p.S803L 0.20 deleterious(0.01) probably_damaging(0.934) TCGA-D6-8568-01 5 140558696 140558696 G T PCDHB8 Missense_Mutation p.A361S 0.07 tolerated_low_confidence(1) benign(0.004) TCGA-D6-8568-01 5 140865902 140865902 C T PCDHGC4 Missense_Mutation p.R388C 0.20 deleterious(0.02) probably_damaging(0.953) TCGA-D6-8568-01 5 36976181 36976181 C T NIPBL Missense_Mutation p.P391L 0.12 tolerated_low_confidence(0.21) benign(0.001) TCGA-D6-8568-01 5 37348606 37348606 C G NUP155 Splice_Site p.X332_splice 0.09 TCGA-D6-8568-01 6 10529410 10529410 C G GCNT2 Missense_Mutation p.S89C 0.18 deleterious(0) probably_damaging(0.998) TCGA-D6-8568-01 6 125231464 125231464 T C RP11-510H23.1 RNA 0.11 TCGA-D6-8568-01 6 143090948 143090948 G C HIVEP2 Missense_Mutation p.T1643R 0.23 deleterious(0) probably_damaging(0.998) TCGA-D6-8568-01 6 155569309 155569309 G C TIAM2 Silent p.L1276L 0.22 TCGA-D6-8568-01 6 7569505 7569505 C G DSP Missense_Mutation p.D502E 0.19 probably_damaging(0.948) TCGA-D6-8568-01 7 102119269 102119269 G C POLR2J Missense_Mutation p.F13L 0.11 tolerated(0.65) benign(0.003) TCGA-D6-8568-01 7 2290500 2290500 C T NUDT1 Missense_Mutation p.P135L 0.17 deleterious(0.02) probably_damaging(0.988) TCGA-D6-8568-01 7 48356756 48356756 C T ABCA13 Missense_Mutation p.P3288S 0.15 probably_damaging(0.997) TCGA-D6-8568-01 7 62753190 62753190 G T ZNF733P RNA 0.35 TCGA-D6-8568-01 7 88963423 88963423 G A ZNF804B Missense_Mutation p.S376N 0.25 deleterious(0.02) benign(0.249) TCGA-D6-8568-01 8 109482343 109482343 G T EMC2 Nonsense_Mutation p.E168* 0.10 TCGA-D6-8568-01 8 12957810 12957810 G C DLC1 Missense_Mutation p.S679C 0.17 deleterious(0) possibly_damaging(0.823) TCGA-D6-8568-01 8 18666343 18666343 C G PSD3 Intron 0.21 TCGA-D6-8568-01 8 24346709 24346709 C A ADAM7 Missense_Mutation p.Q377K 0.10 tolerated(0.06) possibly_damaging(0.832) TCGA-D6-8568-01 8 29923609 29923609 G C TMEM66 Missense_Mutation p.P297A 0.13 deleterious(0.01) benign(0.389) TCGA-D6-8568-01 8 95773967 95773967 T A DPY19L4 Missense_Mutation p.F259I 0.18 deleterious(0) possibly_damaging(0.744) TCGA-D6-8568-01 9 116353646 116353646 G A RGS3 Missense_Mutation p.E1017K 0.18 tolerated(0.08) benign(0.281) TCGA-D6-8568-01 9 131670178 131670178 G A LRRC8A Silent p.E245E 0.15 TCGA-D6-8568-01 9 17793390 17793390 A T SH3GL2 Nonsense_Mutation p.R252* 0.23 TCGA-D6-8568-01 9 35079596 35079596 C T FANCG 5'UTR 0.20 TCGA-D6-8568-01 9 78973658 78973658 C T PCSK5 Silent p.S1801S 0.21 TCGA-D6-8568-01 9 95405034 95405034 C T IPPK Missense_Mutation p.G188E 0.15 deleterious(0) probably_damaging(0.996) TCGA-D6-8568-01 X 142967437 142967437 C A UBE2NL Missense_Mutation p.P79T 0.48 deleterious(0.01) probably_damaging(0.982) TCGA-D6-8568-01 X 153214697 153214697 T G HCFC1 3'UTR 0.34 TCGA-D6-8568-01 X 154194412 154194412 A G F8 Missense_Mutation p.Y426H 0.50 tolerated(0.07) benign(0.02) TCGA-D6-8568-01 X 18674850 18674850 T G RS1 Missense_Mutation p.K36T 0.32 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-D6-8568-01 X 44942798 44942798 A G KDM6A Missense_Mutation p.I1126M 0.22 deleterious(0) possibly_damaging(0.792) TCGA-D6-8569-01 10 125805547 125805547 C G CHST15 Missense_Mutation p.R61T 0.30 deleterious_low_confidence(0.01) benign(0.159) TCGA-D6-8569-01 10 131761720 131761720 A T EBF3 Missense_Mutation p.F68I 0.21 deleterious(0) probably_damaging(0.998) TCGA-D6-8569-01 10 29704286 29704286 C G PTCHD3P1 Intron 0.24 TCGA-D6-8569-01 10 34558645 34558645 A G PARD3 Missense_Mutation p.M1123T 0.25 tolerated(0.18) benign(0.002) TCGA-D6-8569-01 10 56089401 56089401 G A PCDH15 Silent p.L220L 0.16 TCGA-D6-8569-01 10 88259531 88259531 G A WAPAL Missense_Mutation p.P490L 0.29 tolerated(0.1) benign(0.086) TCGA-D6-8569-01 10 95791128 95791128 A T PLCE1 Missense_Mutation p.I109L 0.15 tolerated_low_confidence(0.35) benign(0.001) TCGA-D6-8569-01 10 99683126 99683126 C T CRTAC1 Silent p.K151K 0.20 TCGA-D6-8569-01 11 113661092 113661092 C T ATF4P4 RNA 0.15 TCGA-D6-8569-01 11 1464609 1464609 C T BRSK2 Silent p.G249G 0.33 TCGA-D6-8569-01 11 1605717 1605717 G A KRTAP5-1 Nonsense_Mutation p.Q255* 0.23 TCGA-D6-8569-01 11 17414551 17414551 C T ABCC8 Missense_Mutation p.R1578H 0.09 deleterious(0.01) benign(0.003) TCGA-D6-8569-01 11 4967550 4967550 C T OR51A4 Missense_Mutation p.V261I 0.24 tolerated(0.45) benign(0.004) TCGA-D6-8569-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-D6-8569-01 11 56057804 56057804 C G OR8H1 Missense_Mutation p.L245F 0.30 deleterious(0) probably_damaging(0.939) TCGA-D6-8569-01 11 59629133 59629133 C A TCN1 Silent p.L141L 0.28 TCGA-D6-8569-01 11 62416262 62416262 G A INTS5 Silent p.T430T 0.26 TCGA-D6-8569-01 11 65487842 65487842 C T RNASEH2C Silent p.V73V 0.32 TCGA-D6-8569-01 11 66026136 66026136 T G KLC2 Missense_Mutation p.V24G 0.27 deleterious(0) probably_damaging(0.989) TCGA-D6-8569-01 11 66191788 66191788 C G NPAS4 Missense_Mutation p.T476S 0.14 tolerated_low_confidence(0.31) probably_damaging(0.931) TCGA-D6-8569-01 12 10149793 10149793 A G CLEC1B Silent p.Y83Y 0.16 TCGA-D6-8569-01 12 112110580 112110580 T C BRAP Splice_Site p.X212_splice 0.31 TCGA-D6-8569-01 12 2224590 2224590 C A CACNA1C Missense_Mutation p.Q84K 0.23 tolerated(0.18) benign(0.259) TCGA-D6-8569-01 12 40702283 40702283 G A LRRK2 Missense_Mutation p.R1325Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-D6-8569-01 12 40702447 40702447 A G LRRK2 Missense_Mutation p.I1380V 0.23 tolerated(0.82) benign(0.057) TCGA-D6-8569-01 12 44782157 44782157 G A TMEM117 Missense_Mutation p.R416Q 0.23 deleterious(0) probably_damaging(0.986) TCGA-D6-8569-01 12 4796104 4796104 A G NDUFA9 Missense_Mutation p.M322V 0.48 tolerated(0.54) benign(0) TCGA-D6-8569-01 12 55886852 55886852 C T OR6C68 Nonsense_Mutation p.Q231* 0.21 TCGA-D6-8569-01 12 69653876 69653876 A G CPSF6 Silent p.K456K 0.34 TCGA-D6-8569-01 12 7899926 7899926 G A CLEC4C Missense_Mutation p.P7S 0.30 tolerated(0.68) benign(0.307) TCGA-D6-8569-01 12 8673786 8673786 A G CLEC4D Silent p.Q189Q 0.11 TCGA-D6-8569-01 13 108518299 108518299 A C FAM155A Missense_Mutation p.W216G 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-D6-8569-01 13 21557591 21557591 C A LATS2 Missense_Mutation p.D752Y 0.26 deleterious(0) probably_damaging(1) TCGA-D6-8569-01 13 35630239 35630239 T C NBEA Silent p.D355D 0.10 TCGA-D6-8569-01 13 48653988 48653988 C A MED4 Missense_Mutation p.R211I 0.25 tolerated(0.18) possibly_damaging(0.77) TCGA-D6-8569-01 13 58208589 58208589 G C PCDH17 Missense_Mutation p.E637Q 0.31 deleterious(0.05) probably_damaging(0.925) TCGA-D6-8569-01 13 67802561 67802561 C A PCDH9 Missense_Mutation p.R4S 0.24 tolerated_low_confidence(0.4) benign(0.005) TCGA-D6-8569-01 13 77581837 77581837 A G FBXL3 Silent p.L244L 0.33 TCGA-D6-8569-01 14 105175994 105175994 A T INF2 Missense_Mutation p.K697M 0.29 deleterious(0.02) unknown(0) TCGA-D6-8569-01 15 100636618 100636618 C A ADAMTS17 Missense_Mutation p.G694W 0.34 deleterious(0) probably_damaging(1) TCGA-D6-8569-01 15 20495435 20495435 G T CHEK2P2 RNA 0.11 TCGA-D6-8569-01 15 24921910 24921910 G T NPAP1 Missense_Mutation p.G299V 0.11 tolerated(0.13) benign(0.097) TCGA-D6-8569-01 15 43670086 43670086 A G TUBGCP4 Silent p.Q142Q 0.22 TCGA-D6-8569-01 15 54630594 54630594 G T UNC13C Missense_Mutation p.M1540I 0.12 tolerated_low_confidence(0.16) benign(0.01) TCGA-D6-8569-01 16 1825247 1825247 C G EME2 Intron 0.14 TCGA-D6-8569-01 16 223474 223474 C T HBA2 Silent p.L102L 0.26 TCGA-D6-8569-01 16 30732114 30732114 C G SRCAP Missense_Mutation p.P1023R 0.36 unknown(0) TCGA-D6-8569-01 16 46960923 46960923 G A GPT2 Silent p.G485G 0.29 TCGA-D6-8569-01 16 53279691 53279691 C G CHD9 Missense_Mutation p.T1128S 0.45 benign(0.041) TCGA-D6-8569-01 16 58076155 58076155 C T MMP15 Silent p.V395V 0.24 TCGA-D6-8569-01 16 68026031 68026031 C T DPEP2 Silent p.Q152Q 0.27 TCGA-D6-8569-01 17 10293783 10293783 G T MYH8 Silent p.I1934I 0.18 TCGA-D6-8569-01 17 7484822 7484822 C T CD68 Missense_Mutation p.A353V 0.44 tolerated(0.05) possibly_damaging(0.505) TCGA-D6-8569-01 17 7577109 7577109 A C TP53 Missense_Mutation p.C277G 0.50 deleterious(0.04) benign(0.191) TCGA-D6-8569-01 18 13072783 13072783 C A CEP192 Missense_Mutation p.S1793Y 0.32 deleterious(0.02) benign(0.103) TCGA-D6-8569-01 19 15514303 15514303 G A AKAP8L Silent p.Y115Y 0.06 TCGA-D6-8569-01 19 41594866 41594866 T A CYP2A13 Silent p.I71I 0.50 TCGA-D6-8569-01 19 46444162 46444162 G A NOVA2 Silent p.I146I 0.16 TCGA-D6-8569-01 19 56600191 56600191 G A ZNF787 Missense_Mutation p.T117M 0.38 deleterious(0) probably_damaging(0.999) TCGA-D6-8569-01 1 113657172 113657172 C T LRIG2 Missense_Mutation p.P735L 0.21 deleterious(0) benign(0.142) TCGA-D6-8569-01 1 115576008 115576008 A G TSHB Missense_Mutation p.M9V 0.32 tolerated(0.43) benign(0) TCGA-D6-8569-01 1 120438120 120438120 T C ADAM30 Silent p.K280K 0.42 TCGA-D6-8569-01 1 13475069 13475069 G C PRAMEF18 Missense_Mutation p.L354V 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-D6-8569-01 1 145368468 145368468 A G NBPF10 Silent p.E3482E 0.11 TCGA-D6-8569-01 1 153391748 153391748 G T S100A7A Missense_Mutation p.S90I 0.13 deleterious(0.03) possibly_damaging(0.852) TCGA-D6-8569-01 1 160133951 160133951 G A ATP1A4 Missense_Mutation p.A262T 0.11 deleterious(0) possibly_damaging(0.769) TCGA-D6-8569-01 1 173545817 173545817 G A SLC9C2 Silent p.I295I 0.24 TCGA-D6-8569-01 1 181702832 181702832 G A CACNA1E Missense_Mutation p.V1070I 0.12 tolerated(0.39) benign(0.103) TCGA-D6-8569-01 1 226030159 226030159 G A EPHX1 Missense_Mutation p.D342N 0.31 deleterious(0.02) possibly_damaging(0.558) TCGA-D6-8569-01 1 228433259 228433259 C T OBSCN Silent p.S1301S 0.14 TCGA-D6-8569-01 1 228471318 228471318 G T OBSCN Missense_Mutation p.G3380V 0.19 probably_damaging(0.996) TCGA-D6-8569-01 1 23395150 23395150 G A KDM1A Missense_Mutation p.G433D 0.15 deleterious(0) probably_damaging(1) TCGA-D6-8569-01 1 236760165 236760165 T A HEATR1 Missense_Mutation p.I239F 0.30 deleterious(0) possibly_damaging(0.47) TCGA-D6-8569-01 1 248367151 248367151 G T OR2M3 Missense_Mutation p.R261L 0.13 tolerated(0.46) benign(0.08) TCGA-D6-8569-01 1 29474830 29474830 G - SRSF4 3'UTR 0.18 TCGA-D6-8569-01 1 33360449 33360449 C A TMEM54 Missense_Mutation p.R209L 0.19 tolerated(0.07) benign(0.061) TCGA-D6-8569-01 1 40702813 40702813 C - RLF Frame_Shift_Del p.S814Pfs*21 0.18 TCGA-D6-8569-01 1 65867547 65867547 C A DNAJC6 Silent p.A737A 0.29 TCGA-D6-8569-01 1 6688666 6688666 C T THAP3 Missense_Mutation p.P61L 0.16 deleterious(0.05) probably_damaging(1) TCGA-D6-8569-01 1 85135479 85135479 T A SSX2IP Missense_Mutation p.N104I 0.14 tolerated(0.31) possibly_damaging(0.811) TCGA-D6-8569-01 1 98205982 98205982 T A DPYD Missense_Mutation p.D96V 0.20 deleterious(0) probably_damaging(0.98) TCGA-D6-8569-01 20 30418934 30418934 A C MYLK2 Missense_Mutation p.T472P 0.27 deleterious(0) probably_damaging(0.984) TCGA-D6-8569-01 20 60738656 60738656 G A SS18L1 Silent p.A233A 0.48 TCGA-D6-8569-01 20 62250863 62250863 T C GMEB2 5'UTR 0.18 TCGA-D6-8569-01 21 10969096 10969096 C A TPTE Missense_Mutation p.R51L 0.08 tolerated(0.67) benign(0.001) TCGA-D6-8569-01 22 27019213 27019213 G A CRYBA4 Missense_Mutation p.E19K 0.05 tolerated(0.1) possibly_damaging(0.792) TCGA-D6-8569-01 22 29091842 29091842 G A CHEK2 Missense_Mutation p.S415F 0.26 deleterious(0) probably_damaging(1) TCGA-D6-8569-01 2 130877741 130877741 C G POTEF Missense_Mutation p.K116N 0.21 tolerated_low_confidence(1) benign(0) TCGA-D6-8569-01 2 179434641 179434641 T C TTN Silent p.P25406P 0.18 TCGA-D6-8569-01 2 185803247 185803247 G T ZNF804A Missense_Mutation p.D1042Y 0.29 deleterious(0) possibly_damaging(0.67) TCGA-D6-8569-01 2 212251760 212251760 T A ERBB4 Missense_Mutation p.E1100V 0.25 tolerated(0.1) benign(0.007) TCGA-D6-8569-01 2 215593641 215593641 C T BARD1 Missense_Mutation p.G698D 0.21 deleterious(0) possibly_damaging(0.583) TCGA-D6-8569-01 2 220099691 220099691 C A ANKZF1 Missense_Mutation p.Q450K 0.19 tolerated(1) benign(0.007) TCGA-D6-8569-01 2 228890246 228890246 T A SPHKAP Splice_Site p.X103_splice 0.26 TCGA-D6-8569-01 2 238253474 238253474 C A COL6A3 Missense_Mutation p.C2396F 0.33 unknown(0) TCGA-D6-8569-01 2 27805489 27805489 C T C2orf16 3'UTR 0.16 TCGA-D6-8569-01 2 30756078 30756078 A G LCLAT1 Missense_Mutation p.R126G 0.35 deleterious(0) probably_damaging(0.999) TCGA-D6-8569-01 2 48897056 48897056 T C STON1-GTF2A1L Missense_Mutation p.S1096P 0.22 deleterious(0) probably_damaging(0.998) TCGA-D6-8569-01 3 119133117 119133117 C A ARHGAP31 Missense_Mutation p.L781I 0.40 tolerated(0.12) benign(0.006) TCGA-D6-8569-01 3 120469647 120469647 A G GTF2E1 Missense_Mutation p.D83G 0.46 deleterious(0.01) probably_damaging(0.978) TCGA-D6-8569-01 3 122420437 122420437 A T PARP14 Silent p.G1012G 0.24 TCGA-D6-8569-01 3 123689003 123689003 G A ROPN1 Missense_Mutation p.S153L 0.08 deleterious(0) benign(0.001) TCGA-D6-8569-01 3 127642128 127642128 A T KBTBD12 Missense_Mutation p.Y75F 0.57 deleterious(0.01) benign(0.244) TCGA-D6-8569-01 3 142499867 142499867 A C TRPC1 Missense_Mutation p.K319T 0.07 deleterious(0) probably_damaging(0.996) TCGA-D6-8569-01 3 152058775 152058775 A T TMEM14E 5'UTR 0.14 TCGA-D6-8569-01 3 188477995 188478003 CATCTGCAA - LPP In_Frame_Del p.I446_N448del 0.24 TCGA-D6-8569-01 3 196083448 196083448 G T UBXN7 3'UTR 0.24 TCGA-D6-8569-01 3 3189988 3189988 T C TRNT1 3'UTR 0.50 TCGA-D6-8569-01 3 48667399 48667399 C G SLC26A6 Missense_Mutation p.V479L 0.11 deleterious(0) benign(0.291) TCGA-D6-8569-01 3 52018113 52018113 A T ACY1 Silent p.P11P 0.55 TCGA-D6-8569-01 3 87289861 87289861 A T CHMP2B Missense_Mutation p.E16V 0.45 deleterious(0.01) possibly_damaging(0.567) TCGA-D6-8569-01 4 101337095 101337095 G A EMCN Silent p.S237S 0.23 TCGA-D6-8569-01 4 153784811 153784811 A G ARFIP1 Silent p.T49T 0.32 TCGA-D6-8569-01 4 156135310 156135310 T A NPY2R Missense_Mutation p.H73Q 0.12 deleterious(0) possibly_damaging(0.718) TCGA-D6-8569-01 4 156294557 156294557 T C MAP9 Missense_Mutation p.K71R 0.38 deleterious(0.04) probably_damaging(0.987) TCGA-D6-8569-01 4 15964361 15964361 G A FGFBP2 Missense_Mutation p.S131F 0.28 deleterious(0) probably_damaging(0.983) TCGA-D6-8569-01 4 162307341 162307341 G T FSTL5 Missense_Mutation p.P701Q 0.38 deleterious(0) probably_damaging(0.955) TCGA-D6-8569-01 4 177032852 177032852 C A WDR17 Missense_Mutation p.Q65K 0.23 deleterious(0.01) benign(0.007) TCGA-D6-8569-01 4 177113916 177113916 C A SPATA4 Missense_Mutation p.V184F 0.32 deleterious(0) benign(0.305) TCGA-D6-8569-01 4 26487499 26487499 G T CCKAR Missense_Mutation p.T129N 0.17 deleterious(0) probably_damaging(1) TCGA-D6-8569-01 4 53368 53368 C T ZNF595 5'UTR 0.04 TCGA-D6-8569-01 4 57301515 57301515 C A PPAT Splice_Site p.X43_splice 0.34 TCGA-D6-8569-01 4 77936159 77936159 G A SEPT11 Missense_Mutation p.A226T 0.18 tolerated(0.36) benign(0.322) TCGA-D6-8569-01 4 79284755 79284755 G T FRAS1 Silent p.L837L 0.26 TCGA-D6-8569-01 4 906521 906521 A G GAK Splice_Site p.X89_splice 0.21 TCGA-D6-8569-01 4 94411877 94411877 C T GRID2 Missense_Mutation p.T649M 0.33 deleterious(0) probably_damaging(0.999) TCGA-D6-8569-01 5 176631153 176631153 G T NSD1 Missense_Mutation p.V366L 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-D6-8569-01 5 63509890 63509890 A T RNF180 Missense_Mutation p.Y246F 0.24 tolerated(0.15) possibly_damaging(0.636) TCGA-D6-8569-01 5 79372810 79372810 G A THBS4 Silent p.L675L 0.30 TCGA-D6-8569-01 5 79372811 79372811 G A THBS4 Missense_Mutation p.V676M 0.30 tolerated(0.11) benign(0.003) TCGA-D6-8569-01 5 93120106 93120106 G A FAM172A Nonsense_Mutation p.R336* 0.14 TCGA-D6-8569-01 5 94833132 94833132 T C TTC37 Silent p.Q1208Q 0.31 TCGA-D6-8569-01 6 102247631 102247631 C T GRIK2 Missense_Mutation p.R354C 0.37 deleterious(0.03) probably_damaging(0.961) TCGA-D6-8569-01 6 132966722 132966723 AA - TAAR1 Frame_Shift_Del p.I140Mfs*7 0.19 TCGA-D6-8569-01 6 150690093 150690093 T A IYD 5'UTR 0.15 TCGA-D6-8569-01 6 157714018 157714018 C A TMEM242 Missense_Mutation p.R114L 0.42 deleterious(0.02) possibly_damaging(0.743) TCGA-D6-8569-01 6 170855255 170855255 A G PSMB1 Missense_Mutation p.I80T 0.17 deleterious(0) probably_damaging(0.991) TCGA-D6-8569-01 6 26032097 26032097 C T HIST1H3B Silent p.R64R 0.12 TCGA-D6-8569-01 6 30620974 30620974 T C C6orf136 3'UTR 0.25 TCGA-D6-8569-01 6 37427342 37427342 G A CMTR1 Missense_Mutation p.G326D 0.40 deleterious(0) probably_damaging(1) TCGA-D6-8569-01 6 70049284 70049284 C A BAI3 Missense_Mutation p.A1116E 0.35 deleterious(0.01) benign(0.133) TCGA-D6-8569-01 6 93955066 93955066 G A EPHA7 Silent p.F944F 0.26 TCGA-D6-8569-01 6 93956664 93956664 G A EPHA7 Missense_Mutation p.P858S 0.35 deleterious(0) probably_damaging(0.999) TCGA-D6-8569-01 7 130038748 130038748 C T CEP41 Missense_Mutation p.G369D 0.16 tolerated(0.15) benign(0.075) TCGA-D6-8569-01 7 141333736 141333736 C T AGK Silent p.G208G 0.29 TCGA-D6-8569-01 7 142176774 142176774 A G TRBV7-4 Missense_Mutation p.L6P 0.32 deleterious(0.03) possibly_damaging(0.562) TCGA-D6-8569-01 7 83640336 83640336 A G SEMA3A Splice_Site p.X332_splice 0.24 TCGA-D6-8569-01 8 113563056 113563056 G A CSMD3 Nonsense_Mutation p.R1470* 0.26 TCGA-D6-8569-01 8 139164068 139164068 G A FAM135B Missense_Mutation p.R884C 0.18 tolerated_low_confidence(0.2) benign(0.005) TCGA-D6-8569-01 8 42868541 42868541 A G HOOK3 Missense_Mutation p.M672V 0.39 deleterious(0.05) probably_damaging(0.949) TCGA-D6-8569-01 8 86358382 86358382 G A CA3 Silent p.A173A 0.29 TCGA-D6-8569-01 8 94929273 94929273 G A PDP1 5'UTR 0.13 TCGA-D6-8569-01 8 9627666 9627666 G A TNKS Missense_Mutation p.S1264N 0.42 tolerated(0.15) possibly_damaging(0.818) TCGA-D6-8569-01 9 100693459 100693459 C T HEMGN Missense_Mutation p.R73Q 0.23 tolerated(1) benign(0) TCGA-D6-8569-01 9 119188094 119188094 G A ASTN2 3'UTR 0.31 TCGA-D6-8569-01 9 125551587 125551587 C T OR5C1 Missense_Mutation p.R126C 0.15 deleterious(0) probably_damaging(0.997) TCGA-D6-8569-01 9 125627747 125627747 C T RC3H2 Silent p.Q505Q 0.23 TCGA-D6-8569-01 9 126134519 126134519 C T CRB2 Missense_Mutation p.P834S 0.29 tolerated(0.13) possibly_damaging(0.876) TCGA-D6-8569-01 9 34976163 34976163 G T KIAA1045 Missense_Mutation p.L193F 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-D6-8569-01 9 990875 990875 C T DMRT3 Missense_Mutation p.T430M 0.41 deleterious_low_confidence(0.01) benign(0.062) TCGA-D6-8569-01 X 135750260 135750260 C T ARHGEF6 Silent p.V753V 0.74 TCGA-D6-8569-01 X 139038215 139038215 G T CXorf66 Missense_Mutation p.S309Y 0.58 deleterious(0.01) probably_damaging(0.919) TCGA-D6-8569-01 X 153591107 153591107 C T FLNA Missense_Mutation p.G776S 0.50 deleterious(0) probably_damaging(1) TCGA-D6-8569-01 X 153595205 153595205 T - FLNA Frame_Shift_Del p.G295Afs*4 0.44 TCGA-D6-8569-01 X 21627482 21627482 G T CNKSR2 Missense_Mutation p.Q813H 0.58 deleterious(0) possibly_damaging(0.832) TCGA-D6-8569-01 X 50129580 50129580 T C DGKK RNA 0.42 TCGA-D6-A4Z9-01 10 1056448 1056448 A T GTPBP4 Silent p.P444P 0.11 TCGA-D6-A4Z9-01 10 118313298 118313298 C T PNLIP Silent p.H173H 0.25 TCGA-D6-A4Z9-01 10 83635703 83635703 A T NRG3 Missense_Mutation p.S203C 0.25 deleterious(0.04) possibly_damaging(0.723) TCGA-D6-A4Z9-01 11 62065047 62065047 C A SCGB1D4 Missense_Mutation p.A47S 0.29 tolerated(0.38) possibly_damaging(0.687) TCGA-D6-A4Z9-01 11 66394099 66394099 G A RBM14 Missense_Mutation p.R657Q 0.53 tolerated(0.06) unknown(0) TCGA-D6-A4Z9-01 11 66476402 66476402 C T SPTBN2 Missense_Mutation p.E388K 0.26 deleterious(0) probably_damaging(0.992) TCGA-D6-A4Z9-01 11 68552417 68552417 G A CPT1A Silent p.F343F 0.04 TCGA-D6-A4Z9-01 11 94331061 94331061 A C PIWIL4 Missense_Mutation p.I454L 0.30 tolerated(0.11) benign(0.011) TCGA-D6-A4Z9-01 12 102468075 102468075 T G NUP37 3'UTR 0.37 TCGA-D6-A4Z9-01 12 109530356 109530356 T A ALKBH2 Missense_Mutation p.D79V 0.36 deleterious(0) probably_damaging(0.922) TCGA-D6-A4Z9-01 12 133351691 133351691 C T GOLGA3 Intron 0.35 TCGA-D6-A4Z9-01 12 133393134 133393134 G A GOLGA3 Missense_Mutation p.T133M 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D6-A4Z9-01 12 22012543 22012543 G C ABCC9 Missense_Mutation p.Q828E 0.25 deleterious(0.02) possibly_damaging(0.511) TCGA-D6-A4Z9-01 12 2717711 2717711 G T CACNA1C Missense_Mutation p.D1151Y 0.31 deleterious(0) probably_damaging(0.944) TCGA-D6-A4Z9-01 12 2721074 2721074 C T CACNA1C Silent p.Y1261Y 0.36 TCGA-D6-A4Z9-01 12 56490841 56490841 A T ERBB3 Missense_Mutation p.I763F 0.22 deleterious(0.01) possibly_damaging(0.737) TCGA-D6-A4Z9-01 12 57573659 57573659 C A LRP1 Silent p.A1687A 0.23 TCGA-D6-A4Z9-01 12 72680679 72680679 C G TRHDE Missense_Mutation p.A333G 0.26 deleterious(0) possibly_damaging(0.84) TCGA-D6-A4Z9-01 14 107283086 107283086 G T IGHV7-81 Silent p.S19S 0.17 TCGA-D6-A4Z9-01 14 22217750 22217750 G A TRAV5 Missense_Mutation p.R34Q 0.27 tolerated(1) benign(0.001) TCGA-D6-A4Z9-01 14 50360513 50360513 G T ARF6 Missense_Mutation p.G20V 0.21 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-D6-A4Z9-01 14 77914882 77914882 A T VIPAS39 Missense_Mutation p.N153K 0.52 tolerated(0.4) benign(0.027) TCGA-D6-A4Z9-01 14 91763765 91763765 T C CCDC88C Missense_Mutation p.T1284A 0.69 deleterious(0.02) benign(0.029) TCGA-D6-A4Z9-01 14 92609452 92609452 C G CPSF2 Silent p.A318A 0.56 TCGA-D6-A4Z9-01 15 44878014 44878014 C A SPG11 Missense_Mutation p.Q1647H 0.26 tolerated(0.07) benign(0.134) TCGA-D6-A4Z9-01 15 51687166 51687166 G A GLDN Missense_Mutation p.V226M 0.27 tolerated(0.07) benign(0.324) TCGA-D6-A4Z9-01 15 85486699 85486699 G A SLC28A1 Silent p.T535T 0.31 TCGA-D6-A4Z9-01 16 20871437 20871437 G A DCUN1D3 Missense_Mutation p.T229I 0.21 tolerated(0.16) benign(0.003) TCGA-D6-A4Z9-01 16 27751397 27751397 C T KIAA0556 Silent p.Y593Y 0.17 TCGA-D6-A4Z9-01 16 30745264 30745264 C G SRCAP Missense_Mutation p.Q2182E 0.41 benign(0.127) TCGA-D6-A4Z9-01 16 55729260 55729260 C T SLC6A2 Missense_Mutation p.L365F 0.17 deleterious(0) probably_damaging(1) TCGA-D6-A4Z9-01 16 67337093 67337093 G A KCTD19 Missense_Mutation p.T200M 0.30 deleterious(0) possibly_damaging(0.724) TCGA-D6-A4Z9-01 17 1549692 1549692 T C RILP 3'UTR 0.57 TCGA-D6-A4Z9-01 17 41002442 41002442 A G AOC2 3'UTR 0.17 TCGA-D6-A4Z9-01 17 48545748 48545748 G A CHAD Missense_Mutation p.L143F 0.23 tolerated(0.89) benign(0.096) TCGA-D6-A4Z9-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.54 deleterious(0) probably_damaging(0.999) TCGA-D6-A4Z9-01 18 33243770 33243770 A G GALNT1 Intron 0.40 TCGA-D6-A4Z9-01 18 76756969 76756969 C G SALL3 Missense_Mutation p.L1184V 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-D6-A4Z9-01 19 15852977 15852977 C G OR10H3 Missense_Mutation p.L259V 0.22 tolerated(0.44) benign(0.001) TCGA-D6-A4Z9-01 19 1821533 1821533 G A REXO1 Silent p.H793H 0.20 TCGA-D6-A4Z9-01 19 38104133 38104133 A G ZNF540 Missense_Mutation p.Y651C 0.15 deleterious(0.03) possibly_damaging(0.693) TCGA-D6-A4Z9-01 19 44792818 44792818 T C ZNF235 Missense_Mutation p.H257R 0.19 tolerated(0.06) benign(0.001) TCGA-D6-A4Z9-01 19 57724398 57724398 A T ZNF264 3'UTR 0.24 TCGA-D6-A4Z9-01 1 102296366 102296366 C T OLFM3 Silent p.Q78Q 0.16 TCGA-D6-A4Z9-01 1 114308737 114308737 T A RSBN1 Silent p.S758S 0.26 TCGA-D6-A4Z9-01 1 150939941 150939941 T C CERS2 Missense_Mutation p.Y180C 0.25 deleterious(0) possibly_damaging(0.585) TCGA-D6-A4Z9-01 1 154951209 154951210 - T CKS1B Frame_Shift_Ins p.L68Afs*50 0.17 TCGA-D6-A4Z9-01 1 155735634 155735637 GCCA - GON4L Frame_Shift_Del p.G1210Ifs*3 0.23 TCGA-D6-A4Z9-01 1 158648221 158648221 G C SPTA1 Missense_Mutation p.S261C 0.13 tolerated(0.16) probably_damaging(0.972) TCGA-D6-A4Z9-01 1 171303840 171303840 T G FMO4 Missense_Mutation p.L373R 0.20 deleterious(0.01) possibly_damaging(0.895) TCGA-D6-A4Z9-01 1 180199676 180199676 T C LHX4 Silent p.S4S 0.21 TCGA-D6-A4Z9-01 1 182026642 182026642 G T ZNF648 Silent p.P168P 0.19 TCGA-D6-A4Z9-01 1 186063420 186063420 T C HMCN1 Silent p.A3403A 0.16 TCGA-D6-A4Z9-01 1 205886433 205886433 C T SLC26A9 Missense_Mutation p.R769H 0.27 tolerated_low_confidence(0.13) benign(0.01) TCGA-D6-A4Z9-01 1 214816112 214816112 A G CENPF Silent p.S1477S 0.31 TCGA-D6-A4Z9-01 1 216373122 216373122 C A USH2A Missense_Mutation p.V1220L 0.16 benign(0.086) TCGA-D6-A4Z9-01 1 23637080 23637080 T A HNRNPR Missense_Mutation p.N593I 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-D6-A4Z9-01 1 248685295 248685295 C T OR2G6 Silent p.A116A 0.05 TCGA-D6-A4Z9-01 1 27695795 27695795 C T FCN3 Missense_Mutation p.G278S 0.20 tolerated(0.06) benign(0.13) TCGA-D6-A4Z9-01 1 28176681 28176681 C T PPP1R8 Silent p.S260S 0.19 TCGA-D6-A4Z9-01 1 66088607 66088607 G A LEPR Nonsense_Mutation p.W872* 0.31 TCGA-D6-A4Z9-01 20 11899106 11899106 G T BTBD3 Missense_Mutation p.K61N 0.11 deleterious_low_confidence(0.01) benign(0.002) TCGA-D6-A4Z9-01 20 18143347 18143347 G A CSRP2BP Missense_Mutation p.A477T 0.25 tolerated(0.22) benign(0.006) TCGA-D6-A4Z9-01 20 44439738 44439738 C T DNTTIP1 Silent p.V298V 0.16 TCGA-D6-A4Z9-01 20 47886636 47886636 T A ZNFX1 Silent p.L571L 0.21 TCGA-D6-A4Z9-01 20 5948132 5948132 G A MCM8 Missense_Mutation p.R309Q 0.30 deleterious(0) possibly_damaging(0.803) TCGA-D6-A4Z9-01 20 8862546 8862546 G T PLCB1 3'UTR 0.32 TCGA-D6-A4Z9-01 21 10970031 10970031 C T TPTE Missense_Mutation p.E33K 0.05 tolerated(0.88) benign(0.001) TCGA-D6-A4Z9-01 22 30051658 30051658 C T NF2 Nonsense_Mutation p.R198* 0.40 TCGA-D6-A4Z9-01 22 50694559 50694559 G A MAPK12 Missense_Mutation p.R192W 0.24 deleterious(0) probably_damaging(1) TCGA-D6-A4Z9-01 2 192278879 192278879 G A MYO1B Silent p.V993V 0.27 TCGA-D6-A4Z9-01 2 196750966 196750966 C T DNAH7 Missense_Mutation p.V1813I 0.11 tolerated(0.12) benign(0.026) TCGA-D6-A4Z9-01 2 233898940 233898940 C A NEU2 Missense_Mutation p.P106T 0.28 tolerated(0.22) possibly_damaging(0.814) TCGA-D6-A4Z9-01 2 54482043 54482043 C A TSPYL6 3'UTR 0.16 TCGA-D6-A4Z9-01 2 60688664 60688664 G A BCL11A Silent p.S461S 0.21 TCGA-D6-A4Z9-01 2 70188289 70188289 C A ASPRV1 Missense_Mutation p.A178S 0.31 tolerated(0.23) benign(0.027) TCGA-D6-A4Z9-01 3 137822609 137822609 G A DZIP1L Missense_Mutation p.R69W 0.15 deleterious(0.02) probably_damaging(0.912) TCGA-D6-A4Z9-01 3 9792851 9792851 C T OGG1 Silent p.F120F 0.55 TCGA-D6-A4Z9-01 4 158057730 158057730 A C GLRB Missense_Mutation p.K136T 0.24 tolerated(0.06) benign(0.346) TCGA-D6-A4Z9-01 4 186272622 186272622 G C SNX25 Silent p.L611L 0.22 TCGA-D6-A4Z9-01 4 187540460 187540460 T C FAT1 Missense_Mutation p.Y2427C 0.29 probably_damaging(0.992) TCGA-D6-A4Z9-01 4 65274925 65274925 T A TECRL Missense_Mutation p.T49S 0.35 tolerated(0.54) benign(0.003) TCGA-D6-A4Z9-01 4 70155439 70155439 G T UGT2B28 Silent p.L353L 0.18 TCGA-D6-A4Z9-01 4 71201289 71201289 C T CABS1 Missense_Mutation p.A178V 0.19 tolerated(0.38) benign(0.018) TCGA-D6-A4Z9-01 4 98480069 98480069 A G STPG2 3'UTR 0.38 TCGA-D6-A4Z9-01 5 140557692 140557692 C T PCDHB8 Missense_Mutation p.A26V 0.11 tolerated_low_confidence(0.19) benign(0.001) TCGA-D6-A4Z9-01 5 179405210 179405210 G C RNF130 Missense_Mutation p.P281A 0.20 deleterious(0) possibly_damaging(0.698) TCGA-D6-A4Z9-01 5 5464410 5464410 T C KIAA0947 Missense_Mutation p.S1655P 0.20 tolerated(0.07) benign(0.133) TCGA-D6-A4Z9-01 6 109770680 109770680 C A MICAL1 Missense_Mutation p.R480L 0.18 deleterious(0.01) benign(0.297) TCGA-D6-A4Z9-01 6 132270603 132270603 C A CTGF Missense_Mutation p.C284F 0.25 deleterious(0.01) possibly_damaging(0.539) TCGA-D6-A4Z9-01 6 168440845 168440845 C T KIF25 Missense_Mutation p.H199Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-D6-A4Z9-01 6 56846541 56846541 T C BEND6 5'UTR 0.23 TCGA-D6-A4Z9-01 7 104717551 104717551 G T KMT2E Missense_Mutation p.A304S 0.14 tolerated(0.16) benign(0.364) TCGA-D6-A4Z9-01 7 104717552 104717552 C T KMT2E Missense_Mutation p.A304V 0.14 tolerated(0.14) possibly_damaging(0.483) TCGA-D6-A4Z9-01 7 117067495 117067495 C T ASZ1 Missense_Mutation p.R7Q 0.29 tolerated(0.34) benign(0.189) TCGA-D6-A4Z9-01 7 126746673 126746673 G C GRM8 Missense_Mutation p.Q202E 0.22 deleterious(0) probably_damaging(0.981) TCGA-D6-A4Z9-01 7 126883110 126883110 C T GRM8 Missense_Mutation p.G50D 0.12 deleterious(0) probably_damaging(0.998) TCGA-D6-A4Z9-01 7 128485310 128485310 G A FLNC Splice_Site p.X1264_splice 0.15 TCGA-D6-A4Z9-01 7 158704239 158704239 A G WDR60 Splice_Site p.X487_splice 0.16 TCGA-D6-A4Z9-01 7 2969673 2969673 G A CARD11 Missense_Mutation p.P536S 0.21 tolerated(0.12) benign(0.002) TCGA-D6-A4Z9-01 7 4091409 4091409 C T SDK1 Missense_Mutation p.T953I 0.25 deleterious(0) possibly_damaging(0.862) TCGA-D6-A4Z9-01 7 64452634 64452634 G C ERV3-1 Missense_Mutation p.F257L 0.23 tolerated(0.38) possibly_damaging(0.487) TCGA-D6-A4Z9-01 7 8110672 8110672 A G GLCCI1 Missense_Mutation p.H363R 0.19 tolerated(0.58) probably_damaging(0.985) TCGA-D6-A4Z9-01 7 82764191 82764191 G C PCLO Missense_Mutation p.P892R 0.17 unknown(0) TCGA-D6-A4Z9-01 7 93555530 93555530 T C GNG11 3'UTR 0.26 TCGA-D6-A4Z9-01 8 142481168 142481168 T A MROH5 3'UTR 0.23 TCGA-D6-A4Z9-01 8 38050240 38050240 A G BAG4 Missense_Mutation p.Y102C 0.22 deleterious(0) probably_damaging(0.935) TCGA-D6-A4Z9-01 8 49833863 49833863 G T SNAI2 5'UTR 0.18 TCGA-D6-A4Z9-01 8 77618518 77618518 A T ZFHX4 Missense_Mutation p.N732I 0.33 possibly_damaging(0.844) TCGA-D6-A4Z9-01 8 95186135 95186135 T G CDH17 Missense_Mutation p.S225R 0.18 deleterious(0) probably_damaging(0.958) TCGA-D6-A4Z9-01 8 97157145 97157145 G T GDF6 Missense_Mutation p.F338L 0.33 tolerated(1) benign(0.002) TCGA-D6-A4Z9-01 9 104171678 104171678 A T ZNF189 Missense_Mutation p.D543V 0.18 tolerated(0.11) benign(0.008) TCGA-D6-A4Z9-01 9 14819319 14819319 G C FREM1 Missense_Mutation p.P820R 0.36 deleterious(0) probably_damaging(0.988) TCGA-D6-A4Z9-01 9 5163902 5163902 T - INSL6 3'UTR 0.29 TCGA-D6-A4Z9-01 X 130412550 130412550 C T IGSF1 Silent p.R647R 0.45 TCGA-D6-A4Z9-01 X 18220055 18220055 G A BEND2 Missense_Mutation p.P305S 0.36 tolerated(0.06) possibly_damaging(0.894) TCGA-D6-A4Z9-01 X 35966480 35966480 A T CXorf22 Silent p.P189P 0.54 TCGA-D6-A4Z9-01 X 36091266 36091266 A C CHDC2 Silent p.V67V 0.33 TCGA-D6-A4Z9-01 X 92927176 92927176 T A NAP1L3 Silent p.T376T 0.39 TCGA-D6-A4ZB-01 10 62652608 62652608 C A RHOBTB1 Missense_Mutation p.D148Y 0.07 tolerated(0.23) probably_damaging(1) TCGA-D6-A4ZB-01 10 89501080 89501080 G A PAPSS2 Missense_Mutation p.R392H 0.06 deleterious(0) probably_damaging(1) TCGA-D6-A4ZB-01 10 96116974 96116974 G C NOC3L Missense_Mutation p.I155M 0.07 deleterious(0) probably_damaging(0.99) TCGA-D6-A4ZB-01 10 98173032 98173032 T A TLL2 Missense_Mutation p.N322I 0.24 deleterious(0.04) benign(0.159) TCGA-D6-A4ZB-01 11 101829032 101829032 G A KIAA1377 Missense_Mutation p.V214M 0.05 tolerated(0.14) benign(0.149) TCGA-D6-A4ZB-01 11 102643601 102643601 G C MMP10 Missense_Mutation p.F401L 0.06 deleterious(0.01) probably_damaging(0.955) TCGA-D6-A4ZB-01 11 113679958 113679958 G C USP28 Nonsense_Mutation p.S664* 0.06 TCGA-D6-A4ZB-01 11 121178165 121178165 G C SC5D Missense_Mutation p.G282R 0.08 tolerated(0.5) benign(0.003) TCGA-D6-A4ZB-01 11 129739840 129739840 C G NFRKB Missense_Mutation p.S1052T 0.06 tolerated_low_confidence(0.37) benign(0.099) TCGA-D6-A4ZB-01 11 129794839 129794839 G C PRDM10 Missense_Mutation p.H610D 0.10 deleterious(0) probably_damaging(0.99) TCGA-D6-A4ZB-01 11 22387132 22387132 T A SLC17A6 Missense_Mutation p.V263E 0.11 deleterious(0.04) possibly_damaging(0.616) TCGA-D6-A4ZB-01 11 5020812 5020812 T A OR51L1 Nonsense_Mutation p.Y200* 0.12 TCGA-D6-A4ZB-01 11 56756711 56756711 C G OR5AK2 Missense_Mutation p.A108G 0.12 tolerated(0.12) benign(0.033) TCGA-D6-A4ZB-01 11 58920123 58920123 G C FAM111A Missense_Mutation p.E328Q 0.11 tolerated(0.1) benign(0.003) TCGA-D6-A4ZB-01 11 65064728 65064728 C T POLA2 Silent p.V595V 0.19 TCGA-D6-A4ZB-01 11 72553832 72553832 G C FCHSD2 Missense_Mutation p.S587C 0.07 deleterious(0) probably_damaging(0.997) TCGA-D6-A4ZB-01 11 94040666 94040666 G C FOLR4 Missense_Mutation p.E180D 0.05 deleterious(0.02) benign(0.117) TCGA-D6-A4ZB-01 11 95826265 95826265 G A MAML2 Silent p.F310F 0.07 TCGA-D6-A4ZB-01 12 100551501 100551501 G C AC010203.1 5'Flank 0.12 TCGA-D6-A4ZB-01 12 103795446 103795446 G A C12orf42 Missense_Mutation p.P29L 0.15 tolerated(1) probably_damaging(0.988) TCGA-D6-A4ZB-01 12 111085594 111085594 C T TCTN1 Missense_Mutation p.A559V 0.31 tolerated(0.13) benign(0.013) TCGA-D6-A4ZB-01 12 11149536 11149536 C A TAS2R20 3'UTR 0.07 TCGA-D6-A4ZB-01 12 26553161 26553161 C T ITPR2 Missense_Mutation p.R2477K 0.28 tolerated(0.12) benign(0.067) TCGA-D6-A4ZB-01 12 48888732 48888732 C G C12orf54 3'UTR 0.07 TCGA-D6-A4ZB-01 12 4919462 4919462 C G KCNA6 Missense_Mutation p.F85L 0.04 deleterious(0) probably_damaging(0.984) TCGA-D6-A4ZB-01 12 51585524 51585524 C T POU6F1 Missense_Mutation p.E139K 0.06 tolerated(0.25) benign(0.013) TCGA-D6-A4ZB-01 12 56993873 56993873 C G BAZ2A Missense_Mutation p.E1636Q 0.08 deleterious(0.01) probably_damaging(0.958) TCGA-D6-A4ZB-01 12 58160780 58160780 G A CYP27B1 Silent p.V15V 0.04 TCGA-D6-A4ZB-01 12 83360728 83360728 C T TMTC2 Nonsense_Mutation p.Q634* 0.09 TCGA-D6-A4ZB-01 12 8374822 8374822 G C FAM90A1 Missense_Mutation p.L331V 0.21 deleterious(0.04) benign(0.342) TCGA-D6-A4ZB-01 12 88584324 88584324 G A TMTC3 Missense_Mutation p.R544Q 0.11 deleterious(0.01) possibly_damaging(0.835) TCGA-D6-A4ZB-01 12 936259 936259 C G WNK1 Missense_Mutation p.C328W 0.08 deleterious(0) unknown(0) TCGA-D6-A4ZB-01 13 113893751 113893751 C T CUL4A Silent p.L307L 0.07 TCGA-D6-A4ZB-01 13 49720032 49720032 C G FNDC3A Nonsense_Mutation p.S313* 0.07 TCGA-D6-A4ZB-01 13 52676401 52676401 C G NEK5 Missense_Mutation p.V213L 0.08 deleterious(0) probably_damaging(0.939) TCGA-D6-A4ZB-01 13 98828834 98828834 A G RNF113B Silent p.D219D 0.16 TCGA-D6-A4ZB-01 14 20824776 20824776 G A PARP2 Missense_Mutation p.M432I 0.07 deleterious(0.03) benign(0.008) TCGA-D6-A4ZB-01 14 47120595 47120595 C T RPL10L Missense_Mutation p.M115I 0.28 deleterious(0.01) benign(0.093) TCGA-D6-A4ZB-01 14 52520354 52520354 A C NID2 Missense_Mutation p.L458V 0.14 tolerated(0.49) benign(0.001) TCGA-D6-A4ZB-01 14 64165370 64165370 G C SGPP1 Missense_Mutation p.L231V 0.07 tolerated(0.09) benign(0.021) TCGA-D6-A4ZB-01 14 75201672 75201672 A G FCF1 3'UTR 0.33 TCGA-D6-A4ZB-01 14 89093259 89093259 G C EML5 Missense_Mutation p.L1555V 0.05 tolerated(0.05) benign(0.422) TCGA-D6-A4ZB-01 14 99641055 99641055 G A BCL11B Silent p.N706N 0.12 TCGA-D6-A4ZB-01 15 45399636 45399636 C G DUOX2 Missense_Mutation p.D534H 0.11 deleterious(0.01) possibly_damaging(0.459) TCGA-D6-A4ZB-01 15 45974742 45974742 G C SQRDL Missense_Mutation p.D311H 0.10 deleterious(0.01) probably_damaging(1) TCGA-D6-A4ZB-01 15 49034200 49034200 C T CEP152 Missense_Mutation p.M1311I 0.05 deleterious(0) probably_damaging(0.993) TCGA-D6-A4ZB-01 15 57924701 57924701 G C GCOM1 Missense_Mutation p.E250Q 0.08 tolerated(0.29) benign(0.169) TCGA-D6-A4ZB-01 15 70961172 70961172 T A UACA Missense_Mutation p.K617N 0.07 deleterious(0.02) possibly_damaging(0.821) TCGA-D6-A4ZB-01 16 17202832 17202832 T A XYLT1 Missense_Mutation p.Y867F 0.11 deleterious(0) probably_damaging(0.985) TCGA-D6-A4ZB-01 16 18796121 18796121 C T RPS15A Missense_Mutation p.D80N 0.15 tolerated(0.17) benign(0.06) TCGA-D6-A4ZB-01 16 20482884 20482884 T C ACSM2A Missense_Mutation p.I256T 0.05 tolerated(0.15) benign(0.024) TCGA-D6-A4ZB-01 16 20838439 20838439 A G AC004381.6 Missense_Mutation p.Q294R 0.06 deleterious(0) probably_damaging(0.988) TCGA-D6-A4ZB-01 16 216647 216647 A G HBM Silent p.Q122Q 0.14 TCGA-D6-A4ZB-01 16 27078280 27078280 C G C16orf82 RNA 0.07 TCGA-D6-A4ZB-01 16 30005994 30005994 C G HIRIP3 Missense_Mutation p.E158Q 0.07 tolerated(0.09) benign(0.216) TCGA-D6-A4ZB-01 16 3350076 3350076 G C TIGD7 Missense_Mutation p.T180R 0.23 deleterious(0) probably_damaging(0.996) TCGA-D6-A4ZB-01 16 66945151 66945151 C T CDH16 Missense_Mutation p.A620T 0.11 tolerated(0.13) benign(0.013) TCGA-D6-A4ZB-01 16 71483713 71483713 C G ZNF23 Missense_Mutation p.R72T 0.12 tolerated(0.1) benign(0.003) TCGA-D6-A4ZB-01 16 74729256 74729256 C T MLKL Missense_Mutation p.A134T 0.08 tolerated(0.49) benign(0.045) TCGA-D6-A4ZB-01 16 86613242 86613242 C T FOXL1 Missense_Mutation p.R305C 0.14 tolerated(0.21) possibly_damaging(0.454) TCGA-D6-A4ZB-01 17 27889898 27889898 C G ABHD15 Missense_Mutation p.C363S 0.08 tolerated(0.34) possibly_damaging(0.77) TCGA-D6-A4ZB-01 17 3101498 3101498 C T OR1A2 Missense_Mutation p.S229F 0.06 deleterious(0) probably_damaging(0.982) TCGA-D6-A4ZB-01 17 37499496 37499496 T C FBXL20 Splice_Site p.X15_splice 0.18 TCGA-D6-A4ZB-01 17 4047063 4047063 G C CYB5D2 Missense_Mutation p.G5A 0.05 tolerated_low_confidence(1) unknown(0) TCGA-D6-A4ZB-01 17 7559232 7559232 C T ATP1B2 3'UTR 0.10 TCGA-D6-A4ZB-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.55 deleterious(0) probably_damaging(1) TCGA-D6-A4ZB-01 17 78681790 78681790 C G RPTOR Silent p.V166V 0.14 TCGA-D6-A4ZB-01 17 8064026 8064026 C A VAMP2 3'UTR 0.23 TCGA-D6-A4ZB-01 18 50977010 50977010 C T DCC Missense_Mutation p.R1124C 0.14 deleterious(0) probably_damaging(0.997) TCGA-D6-A4ZB-01 18 67671368 67671368 G T RTTN 3'UTR 0.21 TCGA-D6-A4ZB-01 18 6870608 6870608 G C ARHGAP28 Missense_Mutation p.K118N 0.06 deleterious(0.02) benign(0.019) TCGA-D6-A4ZB-01 19 14710995 14710995 G T CLEC17A Splice_Site p.X298_splice 0.22 TCGA-D6-A4ZB-01 19 15651283 15651283 G A CYP4F22 Missense_Mutation p.A232T 0.10 tolerated(0.09) possibly_damaging(0.685) TCGA-D6-A4ZB-01 19 1827499 1827499 G A REXO1 Missense_Mutation p.P430L 0.16 tolerated(0.34) benign(0.007) TCGA-D6-A4ZB-01 19 20117026 20117026 C T ZNF682 Missense_Mutation p.E429K 0.06 deleterious(0.04) possibly_damaging(0.488) TCGA-D6-A4ZB-01 19 22271673 22271673 G A ZNF257 Missense_Mutation p.C374Y 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-D6-A4ZB-01 19 39880712 39880712 T C PAF1 Missense_Mutation p.N56S 0.06 tolerated(0.46) benign(0.145) TCGA-D6-A4ZB-01 19 39883133 39883133 G T MED29 Missense_Mutation p.L103F 0.39 tolerated(0.14) benign(0.059) TCGA-D6-A4ZB-01 19 41061990 41061990 C T SPTBN4 Silent p.S1695S 0.38 TCGA-D6-A4ZB-01 19 48588339 48588339 T C PLA2G4C Missense_Mutation p.K284R 0.08 tolerated(0.36) benign(0.001) TCGA-D6-A4ZB-01 19 49619650 49619650 C T LIN7B Missense_Mutation p.S120F 0.46 deleterious(0) probably_damaging(1) TCGA-D6-A4ZB-01 19 54783471 54783471 C A LILRB2 Missense_Mutation p.Q129H 0.22 deleterious(0.01) possibly_damaging(0.5) TCGA-D6-A4ZB-01 19 58490029 58490029 A T ZNF606 Silent p.I673I 0.12 TCGA-D6-A4ZB-01 19 58757773 58757773 G A ZNF544 Nonsense_Mutation p.W47* 0.19 TCGA-D6-A4ZB-01 1 101203719 101203719 C T VCAM1 Silent p.L700L 0.15 TCGA-D6-A4ZB-01 1 10195049 10195049 G C UBE4B Missense_Mutation p.D677H 0.07 deleterious(0) probably_damaging(0.994) TCGA-D6-A4ZB-01 1 118534050 118534050 G C SPAG17 Silent p.L1821L 0.09 TCGA-D6-A4ZB-01 1 1203194 1203194 C A UBE2J2 Intron 0.16 TCGA-D6-A4ZB-01 1 12884817 12884817 C T PRAMEF11 Missense_Mutation p.D432N 0.21 tolerated(0.64) benign(0.009) TCGA-D6-A4ZB-01 1 146398458 146398458 G T NBPF12 Silent p.L148L 0.03 TCGA-D6-A4ZB-01 1 150916415 150916415 G T SETDB1 Missense_Mutation p.D299Y 0.04 deleterious(0) probably_damaging(0.999) TCGA-D6-A4ZB-01 1 152282185 152282185 G T FLG Nonsense_Mutation p.S1726* 0.25 TCGA-D6-A4ZB-01 1 155235737 155235737 C G CLK2 Missense_Mutation p.D282H 0.05 tolerated(0.17) probably_damaging(0.934) TCGA-D6-A4ZB-01 1 158735613 158735613 G C OR6N1 Missense_Mutation p.P287R 0.08 deleterious(0) probably_damaging(1) TCGA-D6-A4ZB-01 1 160580486 160580486 C T SLAMF1 3'UTR 0.07 TCGA-D6-A4ZB-01 1 173931010 173931010 C G RC3H1 Missense_Mutation p.E685D 0.05 tolerated(1) benign(0.001) TCGA-D6-A4ZB-01 1 19511697 19511697 G A UBR4 Missense_Mutation p.P612S 0.04 benign(0.172) TCGA-D6-A4ZB-01 1 246704444 246704444 C T TFB2M Silent p.E360E 0.09 TCGA-D6-A4ZB-01 1 248343476 248343476 C T OR2M2 Silent p.L63L 0.03 TCGA-D6-A4ZB-01 1 248512914 248512914 C T OR14C36 Missense_Mutation p.P280S 0.21 deleterious(0.01) probably_damaging(1) TCGA-D6-A4ZB-01 1 248684949 248684949 T C OR2G6 Translation_Start_Site p.M1? 0.08 deleterious(0) benign(0.08) TCGA-D6-A4ZB-01 1 33957252 33957252 C T ZSCAN20 Missense_Mutation p.T465I 0.12 tolerated(1) benign(0) TCGA-D6-A4ZB-01 1 33959020 33959020 C G ZSCAN20 Missense_Mutation p.P560A 0.08 tolerated(0.55) benign(0.255) TCGA-D6-A4ZB-01 1 33959815 33959815 C T ZSCAN20 Intron 0.10 TCGA-D6-A4ZB-01 1 33960196 33960196 C G ZSCAN20 Missense_Mutation p.S751C 0.07 deleterious(0) probably_damaging(0.94) TCGA-D6-A4ZB-01 1 33960221 33960221 C G ZSCAN20 Missense_Mutation p.I759M 0.09 deleterious(0.03) possibly_damaging(0.794) TCGA-D6-A4ZB-01 1 33960364 33960364 C G ZSCAN20 Nonsense_Mutation p.S807* 0.08 TCGA-D6-A4ZB-01 1 33960504 33960504 C G ZSCAN20 Missense_Mutation p.Q854E 0.06 tolerated_low_confidence(0.55) benign(0.021) TCGA-D6-A4ZB-01 1 33960512 33960512 C T ZSCAN20 Silent p.I856I 0.07 TCGA-D6-A4ZB-01 1 33960785 33960785 C T ZSCAN20 Silent p.I947I 0.07 TCGA-D6-A4ZB-01 1 33960848 33960848 C T ZSCAN20 Silent p.F968F 0.09 TCGA-D6-A4ZB-01 1 33961087 33961087 C T ZSCAN20 3'UTR 0.16 TCGA-D6-A4ZB-01 1 34209162 34209162 G C CSMD2 Missense_Mutation p.S591C 0.10 deleterious(0) probably_damaging(1) TCGA-D6-A4ZB-01 1 38484941 38484941 C T UTP11L Silent p.V151V 0.08 TCGA-D6-A4ZB-01 1 64643788 64643788 T G ROR1 Missense_Mutation p.F688L 0.06 deleterious(0) possibly_damaging(0.507) TCGA-D6-A4ZB-01 1 75037532 75037532 C T C1orf173 Missense_Mutation p.E1288K 0.04 tolerated(0.09) possibly_damaging(0.797) TCGA-D6-A4ZB-01 1 85559220 85559220 A T WDR63 Missense_Mutation p.T313S 0.07 tolerated(0.79) benign(0.009) TCGA-D6-A4ZB-01 1 93698028 93698028 C T CCDC18 Nonsense_Mutation p.Q833* 0.08 TCGA-D6-A4ZB-01 1 94054673 94054673 C G BCAR3 Missense_Mutation p.E264Q 0.13 tolerated(0.06) possibly_damaging(0.792) TCGA-D6-A4ZB-01 20 1285974 1285974 G A SNPH Missense_Mutation p.R254Q 0.12 tolerated(0.57) benign(0.05) TCGA-D6-A4ZB-01 20 33879620 33879620 C T FAM83C Missense_Mutation p.R163H 0.14 deleterious(0.03) benign(0.212) TCGA-D6-A4ZB-01 20 36841585 36841585 A G KIAA1755 Silent p.L1154L 0.26 TCGA-D6-A4ZB-01 20 60886035 60886035 C G LAMA5 Missense_Mutation p.V3402L 0.07 benign(0.104) TCGA-D6-A4ZB-01 21 46077981 46077981 A T KRTAP12-3 Missense_Mutation p.S29C 0.14 tolerated(0.21) benign(0.007) TCGA-D6-A4ZB-01 21 46281125 46281125 G A PTTG1IP Missense_Mutation p.P77L 0.15 deleterious(0) benign(0.011) TCGA-D6-A4ZB-01 2 10101374 10101374 G C GRHL1 Missense_Mutation p.E160Q 0.04 tolerated(0.05) possibly_damaging(0.713) TCGA-D6-A4ZB-01 2 108604727 108604727 G A SLC5A7 Missense_Mutation p.S39N 0.05 deleterious(0.01) benign(0.027) TCGA-D6-A4ZB-01 2 111408321 111408321 G C BUB1 Missense_Mutation p.H669D 0.12 tolerated(0.92) benign(0) TCGA-D6-A4ZB-01 2 131487460 131487460 G T GPR148 Missense_Mutation p.A246S 0.04 tolerated(0.2) benign(0.239) TCGA-D6-A4ZB-01 2 135694482 135694482 C G CCNT2 Missense_Mutation p.I104M 0.10 deleterious(0) probably_damaging(0.999) TCGA-D6-A4ZB-01 2 160604933 160604933 G C MARCH7 Missense_Mutation p.E378Q 0.06 deleterious(0.04) probably_damaging(0.995) TCGA-D6-A4ZB-01 2 1651988 1651988 C T PXDN Silent p.L1188L 0.04 TCGA-D6-A4ZB-01 2 170031721 170031721 C T LRP2 Missense_Mutation p.E3584K 0.06 probably_damaging(1) TCGA-D6-A4ZB-01 2 170505760 170505760 C T CCDC173 Missense_Mutation p.E417K 0.17 deleterious(0.05) probably_damaging(0.966) TCGA-D6-A4ZB-01 2 174820352 174820352 C T SP3 Silent p.L296L 0.05 TCGA-D6-A4ZB-01 2 174820724 174820724 C T SP3 Silent p.V172V 0.04 TCGA-D6-A4ZB-01 2 186670981 186670981 C G FSIP2 Missense_Mutation p.R5739G 0.09 benign(0) TCGA-D6-A4ZB-01 2 190656531 190656531 C A PMS1 5'UTR 0.35 TCGA-D6-A4ZB-01 2 196729578 196729578 G C DNAH7 Missense_Mutation p.S2267R 0.04 deleterious(0.02) benign(0.019) TCGA-D6-A4ZB-01 2 202343179 202343179 G C STRADB Missense_Mutation p.D309H 0.05 deleterious(0) probably_damaging(1) TCGA-D6-A4ZB-01 2 202725548 202725548 C G CDK15 Intron 0.10 TCGA-D6-A4ZB-01 2 203383547 203383547 G C BMPR2 Silent p.L208L 0.08 TCGA-D6-A4ZB-01 2 219492879 219492879 C T PLCD4 Silent p.F300F 0.10 TCGA-D6-A4ZB-01 2 25013265 25013265 A G PTRHD1 3'UTR 0.18 TCGA-D6-A4ZB-01 2 27446491 27446491 G C CAD Silent p.L290L 0.03 TCGA-D6-A4ZB-01 2 29295589 29295589 C A C2orf71 Missense_Mutation p.R513S 0.12 deleterious(0) probably_damaging(0.999) TCGA-D6-A4ZB-01 2 30863480 30863480 G C LCLAT1 Missense_Mutation p.E414Q 0.07 tolerated_low_confidence(0.06) benign(0.155) TCGA-D6-A4ZB-01 2 38297968 38297968 G A CYP1B1 Missense_Mutation p.T510I 0.14 deleterious(0) probably_damaging(0.998) TCGA-D6-A4ZB-01 2 39008728 39008728 G A GEMIN6 Silent p.Q66Q 0.05 TCGA-D6-A4ZB-01 2 77746430 77746430 C T LRRTM4 Missense_Mutation p.G189S 0.41 tolerated(0.19) probably_damaging(1) TCGA-D6-A4ZB-01 2 79971609 79971609 G A CTNNA2 Missense_Mutation p.A67T 0.16 tolerated(0.05) probably_damaging(0.93) TCGA-D6-A4ZB-01 2 98354246 98354246 C G ZAP70 Silent p.L503L 0.04 TCGA-D6-A4ZB-01 3 101370231 101370231 G C ZBTB11 Missense_Mutation p.Q981E 0.10 tolerated_low_confidence(1) benign(0) TCGA-D6-A4ZB-01 3 119305355 119305355 G A ADPRH Silent p.A174A 0.04 TCGA-D6-A4ZB-01 3 140281940 140281940 G C CLSTN2 Missense_Mutation p.D793H 0.11 tolerated(0.05) benign(0) TCGA-D6-A4ZB-01 3 140675520 140675520 C G SLC25A36 Missense_Mutation p.L65V 0.12 tolerated(0.19) benign(0.013) TCGA-D6-A4ZB-01 3 183368116 183368116 C G KLHL24 5'UTR 0.07 TCGA-D6-A4ZB-01 3 193201786 193201786 T A ATP13A4 Silent p.V249V 0.03 TCGA-D6-A4ZB-01 3 38053097 38053097 G T PLCD1 Missense_Mutation p.Q187K 0.50 tolerated(1) benign(0.001) TCGA-D6-A4ZB-01 3 99568154 99568154 C A FILIP1L Missense_Mutation p.R789I 0.04 deleterious(0.01) benign(0.005) TCGA-D6-A4ZB-01 4 158254065 158254065 A T GRIA2 Missense_Mutation p.N326I 0.09 deleterious(0.04) probably_damaging(0.991) TCGA-D6-A4ZB-01 4 175220309 175220309 C G CEP44 Missense_Mutation p.L13V 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-D6-A4ZB-01 4 186283801 186283801 G C SNX25 Missense_Mutation p.R793P 0.09 deleterious(0) probably_damaging(0.995) TCGA-D6-A4ZB-01 4 187004655 187004655 C G TLR3 Silent p.V605V 0.06 TCGA-D6-A4ZB-01 4 187630870 187630870 C A FAT1 Nonsense_Mutation p.E38* 0.25 TCGA-D6-A4ZB-01 4 2240603 2240603 C T HAUS3 Silent p.Q359Q 0.13 TCGA-D6-A4ZB-01 4 52860891 52860891 C A LRRC66 Missense_Mutation p.C766F 0.24 tolerated(0.61) benign(0.007) TCGA-D6-A4ZB-01 4 6335418 6335418 G C PPP2R2C Missense_Mutation p.F277L 0.09 deleterious(0.02) benign(0.427) TCGA-D6-A4ZB-01 5 139743448 139743448 T C SLC4A9 Silent p.T429T 0.10 TCGA-D6-A4ZB-01 5 140203449 140203449 G A PCDHA5 Missense_Mutation p.V697M 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.462) TCGA-D6-A4ZB-01 5 150946825 150946825 G C FAT2 Missense_Mutation p.N556K 0.10 probably_damaging(0.999) TCGA-D6-A4ZB-01 5 156479435 156479435 C A HAVCR1 Missense_Mutation p.V204L 0.07 tolerated(0.38) unknown(0) TCGA-D6-A4ZB-01 5 178489046 178489046 G T ZNF354C 5'UTR 0.09 TCGA-D6-A4ZB-01 5 181757 181757 G T PLEKHG4B Missense_Mutation p.D1155Y 0.09 deleterious(0.01) benign(0) TCGA-D6-A4ZB-01 5 1879678 1879678 C T IRX4 Missense_Mutation p.E226K 0.08 tolerated(0.05) benign(0.035) TCGA-D6-A4ZB-01 5 45262532 45262532 G C HCN1 Missense_Mutation p.P722A 0.13 tolerated_low_confidence(0.08) benign(0.055) TCGA-D6-A4ZB-01 5 45262557 45262557 G T HCN1 Silent p.A713A 0.07 TCGA-D6-A4ZB-01 5 72875907 72875907 G T UTP15 Missense_Mutation p.K515N 0.07 tolerated_low_confidence(0.07) benign(0.035) TCGA-D6-A4ZB-01 5 76649232 76649232 G C PDE8B Splice_Site p.X389_splice 0.07 TCGA-D6-A4ZB-01 6 111695502 111695502 C T REV3L Silent p.T1352T 0.14 TCGA-D6-A4ZB-01 6 117043403 117043403 C G KPNA5 Missense_Mutation p.Q291E 0.07 tolerated(0.1) probably_damaging(0.986) TCGA-D6-A4ZB-01 6 142741141 142741141 G C GPR126 Missense_Mutation p.L1073F 0.06 deleterious(0) probably_damaging(1) TCGA-D6-A4ZB-01 6 155750022 155750022 C T NOX3 Missense_Mutation p.V351M 0.06 deleterious(0) probably_damaging(0.91) TCGA-D6-A4ZB-01 6 165715297 165715297 G T C6orf118 Missense_Mutation p.R172S 0.32 tolerated(0.33) possibly_damaging(0.799) TCGA-D6-A4ZB-01 6 26468373 26468373 A G BTN2A1 Missense_Mutation p.N394D 0.06 tolerated(1) benign(0.06) TCGA-D6-A4ZB-01 6 32160012 32160012 C T GPSM3 Missense_Mutation p.E20K 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-D6-A4ZB-01 6 43492249 43492249 C T XPO5 Missense_Mutation p.R1146Q 0.19 deleterious(0.03) probably_damaging(0.962) TCGA-D6-A4ZB-01 6 71235240 71235240 C G FAM135A Nonsense_Mutation p.S818* 0.13 TCGA-D6-A4ZB-01 6 71569873 71569873 C G B3GAT2 3'UTR 0.05 TCGA-D6-A4ZB-01 6 73904786 73904786 G T KCNQ5 Missense_Mutation p.L835F 0.06 deleterious_low_confidence(0.01) benign(0.398) TCGA-D6-A4ZB-01 6 7585618 7585618 C T DSP Missense_Mutation p.S2708L 0.06 probably_damaging(1) TCGA-D6-A4ZB-01 7 106509542 106509542 C G PIK3CG Missense_Mutation p.N512K 0.04 tolerated(0.29) benign(0.099) TCGA-D6-A4ZB-01 7 108113089 108113089 G C PNPLA8 Missense_Mutation p.P702R 0.09 deleterious(0) probably_damaging(0.968) TCGA-D6-A4ZB-01 7 111368447 111368447 C T DOCK4 Silent p.P1928P 0.10 TCGA-D6-A4ZB-01 7 112124917 112124917 G C LSMEM1 Missense_Mutation p.D16H 0.08 deleterious(0) possibly_damaging(0.79) TCGA-D6-A4ZB-01 7 122033559 122033559 T G CADPS2 Missense_Mutation p.M942L 0.29 deleterious(0.01) benign(0.265) TCGA-D6-A4ZB-01 7 142566032 142566032 A G EPHB6 Missense_Mutation p.Y651C 0.10 tolerated(0.09) probably_damaging(0.945) TCGA-D6-A4ZB-01 7 146829381 146829381 C G CNTNAP2 Silent p.V376V 0.14 TCGA-D6-A4ZB-01 7 47970749 47970749 T A PKD1L1 Missense_Mutation p.Q230L 0.11 deleterious_low_confidence(0.02) benign(0) TCGA-D6-A4ZB-01 7 94167034 94167034 A G CASD1 Missense_Mutation p.E365G 0.05 tolerated(0.12) benign(0.438) TCGA-D6-A4ZB-01 8 105503752 105503752 T A LRP12 Missense_Mutation p.N577Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-D6-A4ZB-01 8 113331173 113331173 A T CSMD3 Missense_Mutation p.I2418N 0.14 deleterious(0.01) possibly_damaging(0.889) TCGA-D6-A4ZB-01 8 113649233 113649233 T G CSMD3 Missense_Mutation p.E1176D 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-D6-A4ZB-01 8 116616662 116616662 C G TRPS1 Missense_Mutation p.D512H 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.531) TCGA-D6-A4ZB-01 8 134239811 134239811 C T WISP1 Missense_Mutation p.S321F 0.06 deleterious(0.03) benign(0.033) TCGA-D6-A4ZB-01 8 139165053 139165053 G A FAM135B Silent p.D555D 0.20 TCGA-D6-A4ZB-01 8 145151588 145151588 C T CYC1 Missense_Mutation p.P238L 0.07 deleterious(0.01) benign(0.145) TCGA-D6-A4ZB-01 8 51621457 51621457 T C SNTG1 Silent p.Y401Y 0.10 TCGA-D6-A4ZB-01 8 53025818 53025818 G T ST18 Silent p.S1028S 0.21 TCGA-D6-A4ZB-01 8 77896226 77896226 G A PEX2 Silent p.F63F 0.09 TCGA-D6-A4ZB-01 8 97311987 97311987 C A PTDSS1 Silent p.I222I 0.05 TCGA-D6-A4ZB-01 8 99170478 99170478 G A POP1 Silent p.A1018A 0.05 TCGA-D6-A4ZB-01 9 111665181 111665181 C T IKBKAP Missense_Mutation p.G598R 0.08 deleterious(0) probably_damaging(0.993) TCGA-D6-A4ZB-01 9 123725945 123725945 C T C5 Missense_Mutation p.G1431E 0.20 deleterious(0) probably_damaging(0.999) TCGA-D6-A4ZB-01 9 125512513 125512513 C T OR1L6 Silent p.N129N 0.06 TCGA-D6-A4ZB-01 9 134165696 134165696 G A PPAPDC3 Silent p.A104A 0.14 TCGA-D6-A4ZB-01 9 32631254 32631254 G A TAF1L Missense_Mutation p.R1442W 0.12 deleterious(0) probably_damaging(0.967) TCGA-D6-A4ZB-01 9 6814790 6814790 G A KDM4C Intron 0.22 TCGA-D6-A4ZB-01 9 84608065 84608072 TTCCTTAG - SPATA31D1 Frame_Shift_Del p.L895Qfs*11 0.13 TCGA-D6-A4ZB-01 9 8465607 8465607 A G PTPRD Silent p.Y1191Y 0.07 TCGA-D6-A4ZB-01 9 88932144 88932144 T A ZCCHC6 Missense_Mutation p.R1088S 0.11 deleterious(0) benign(0.079) TCGA-D6-A4ZB-01 X 101623790 101623790 T C NXF2B Splice_Site p.X192_splice 0.07 TCGA-D6-A4ZB-01 X 115582732 115582732 G C SLC6A14 Missense_Mutation p.L352F 0.10 tolerated(0.22) benign(0.158) TCGA-D6-A4ZB-01 X 134679459 134679459 C G DDX26B Missense_Mutation p.L101V 0.11 tolerated(0.22) probably_damaging(0.982) TCGA-D6-A4ZB-01 X 138644302 138644302 T A F9 3'UTR 0.50 TCGA-D6-A4ZB-01 X 24521477 24521477 A T PDK3 Missense_Mutation p.R118S 0.33 deleterious(0) possibly_damaging(0.815) TCGA-D6-A4ZB-01 X 30872591 30872591 G A TAB3 Silent p.H397H 0.10 TCGA-D6-A4ZB-01 X 49957773 49957773 C A AKAP4 Nonsense_Mutation p.E531* 0.11 TCGA-D6-A6EK-01 10 124754116 124754116 C T IKZF5 Missense_Mutation p.C147Y 0.11 tolerated(0.15) probably_damaging(0.995) TCGA-D6-A6EK-01 10 126715728 126715728 C T CTBP2 Missense_Mutation p.E201K 0.13 deleterious_low_confidence(0) benign(0.345) TCGA-D6-A6EK-01 10 131666136 131666136 C A EBF3 Missense_Mutation p.W265C 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-D6-A6EK-01 10 17152949 17152949 A T CUBN Silent p.P328P 0.17 TCGA-D6-A6EK-01 10 28250550 28250550 C A ARMC4 Missense_Mutation p.A445S 0.09 tolerated(0.31) benign(0.025) TCGA-D6-A6EK-01 10 63852132 63852132 A T ARID5B Missense_Mutation p.E970D 0.15 tolerated(0.24) probably_damaging(0.952) TCGA-D6-A6EK-01 10 99512621 99512621 A T ZFYVE27 Missense_Mutation p.H300L 0.12 tolerated(0.37) benign(0.402) TCGA-D6-A6EK-01 11 102567145 102567145 C T MMP27 Missense_Mutation p.A287T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-D6-A6EK-01 11 128839322 128839322 G A ARHGAP32 Missense_Mutation p.S1915F 0.19 deleterious_low_confidence(0.01) benign(0.117) TCGA-D6-A6EK-01 11 56510610 56510610 A C OR9G4 Missense_Mutation p.I226M 0.23 deleterious(0.01) possibly_damaging(0.794) TCGA-D6-A6EK-01 11 59245110 59245110 G A OR4D10 Missense_Mutation p.D70N 0.25 deleterious(0.01) probably_damaging(1) TCGA-D6-A6EK-01 11 59857931 59857931 G T MS4A2 Missense_Mutation p.W103C 0.16 deleterious(0) probably_damaging(1) TCGA-D6-A6EK-01 11 60068506 60068506 A T MS4A4A Silent p.A121A 0.14 TCGA-D6-A6EK-01 11 64418741 64418741 G T NRXN2 Silent p.I968I 0.17 TCGA-D6-A6EK-01 11 65003880 65003880 G A SLC22A20 Intron 0.33 TCGA-D6-A6EK-01 11 65421910 65421911 - C RELA Frame_Shift_Ins p.E532Gfs*24 0.09 TCGA-D6-A6EK-01 11 65746521 65746521 C T SART1 3'UTR 0.11 TCGA-D6-A6EK-01 11 6816034 6816034 G T OR6A2 Silent p.V302V 0.16 TCGA-D6-A6EK-01 11 68207277 68207277 G T LRP5 Missense_Mutation p.V1461L 0.35 tolerated(0.83) benign(0.002) TCGA-D6-A6EK-01 11 77402211 77402211 C A RSF1 Nonsense_Mutation p.E965* 0.23 TCGA-D6-A6EK-01 12 113873329 113873329 C T SDSL Silent p.A213A 0.18 TCGA-D6-A6EK-01 12 117969469 117969469 A C KSR2 Splice_Site p.X577_splice 0.18 TCGA-D6-A6EK-01 12 2694584 2694584 G T CACNA1C Silent p.P794P 0.44 TCGA-D6-A6EK-01 12 29485551 29485551 C T FAR2 Missense_Mutation p.R426C 0.18 deleterious(0.01) benign(0.025) TCGA-D6-A6EK-01 12 32481214 32481214 T A BICD1 Missense_Mutation p.S609T 0.17 tolerated(0.18) probably_damaging(0.911) TCGA-D6-A6EK-01 12 4639058 4639058 C T C12orf4 Silent p.V161V 0.13 TCGA-D6-A6EK-01 12 52470570 52470570 G T C12orf44 Missense_Mutation p.D85Y 0.09 deleterious(0.01) benign(0.061) TCGA-D6-A6EK-01 12 6639104 6639104 G - NCAPD2 Frame_Shift_Del p.A1274Pfs*8 0.18 TCGA-D6-A6EK-01 12 7086357 7086357 A T LPCAT3 Missense_Mutation p.I472N 0.20 deleterious(0) possibly_damaging(0.466) TCGA-D6-A6EK-01 13 101266634 101266634 G T TMTC4 Silent p.A629A 0.21 TCGA-D6-A6EK-01 13 113174235 113174235 C T TUBGCP3 Missense_Mutation p.E616K 0.27 deleterious(0.01) possibly_damaging(0.688) TCGA-D6-A6EK-01 13 38320186 38320186 G A TRPC4 Missense_Mutation p.S262F 0.16 deleterious(0) probably_damaging(0.996) TCGA-D6-A6EK-01 13 49281365 49281366 - T CYSLTR2 Frame_Shift_Ins p.A139Gfs*41 0.10 TCGA-D6-A6EK-01 13 60566632 60566632 C T DIAPH3 Missense_Mutation p.R367H 0.24 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EK-01 14 107219093 107219093 T C IGHV3-74 Missense_Mutation p.I13V 0.41 tolerated_low_confidence(0.2) benign(0.011) TCGA-D6-A6EK-01 14 20585576 20585577 - C OR4K17 Frame_Shift_Ins p.S6Ffs*9 0.16 TCGA-D6-A6EK-01 14 20692042 20692042 A G OR11H6 Silent p.L58L 0.16 TCGA-D6-A6EK-01 15 23445456 23445456 G T AC100757.1 3'Flank 0.13 TCGA-D6-A6EK-01 15 30025364 30025364 C T TJP1 Nonsense_Mutation p.W557* 0.16 TCGA-D6-A6EK-01 15 35196564 35196564 C G AQR Missense_Mutation p.R658S 0.16 deleterious(0) probably_damaging(0.996) TCGA-D6-A6EK-01 15 44789262 44789262 G A CTDSPL2 Missense_Mutation p.E270K 0.22 tolerated(0.33) benign(0.082) TCGA-D6-A6EK-01 15 50331023 50331023 G A ATP8B4 Missense_Mutation p.R102C 0.22 deleterious(0) probably_damaging(1) TCGA-D6-A6EK-01 15 56974508 56974508 C T ZNF280D Silent p.K316K 0.09 TCGA-D6-A6EK-01 15 57837890 57837890 A T CGNL1 Nonsense_Mutation p.K1201* 0.26 TCGA-D6-A6EK-01 15 69003107 69003107 C T CORO2B Missense_Mutation p.R124W 0.14 deleterious(0) possibly_damaging(0.821) TCGA-D6-A6EK-01 15 74281125 74281125 C - STOML1 Frame_Shift_Del p.A137Lfs*20 0.13 TCGA-D6-A6EK-01 15 79350810 79350810 C T RASGRF1 Missense_Mutation p.A133T 0.12 tolerated(0.06) benign(0.3) TCGA-D6-A6EK-01 16 23400150 23400150 C A COG7 3'UTR 0.12 TCGA-D6-A6EK-01 16 56904621 56904621 C T SLC12A3 Silent p.S275S 0.12 TCGA-D6-A6EK-01 16 69143484 69143484 T A HAS3 Missense_Mutation p.F62L 0.16 deleterious(0.01) possibly_damaging(0.824) TCGA-D6-A6EK-01 17 34859817 34859817 T C MYO19 Missense_Mutation p.H650R 0.27 tolerated(0.91) probably_damaging(0.999) TCGA-D6-A6EK-01 17 55194253 55194253 C A AKAP1 Missense_Mutation p.A822E 0.11 deleterious(0) probably_damaging(0.991) TCGA-D6-A6EK-01 17 56423569 56423569 G A SUPT4H1 3'UTR 0.22 TCGA-D6-A6EK-01 17 58740836 58740836 C T PPM1D Nonsense_Mutation p.R581* 0.14 TCGA-D6-A6EK-01 17 6674069 6674069 G A XAF1 Silent p.T205T 0.21 TCGA-D6-A6EK-01 17 73831565 73831565 C T UNC13D Silent p.P591P 0.21 TCGA-D6-A6EK-01 17 74679929 74679929 C T MXRA7 Intron 0.19 TCGA-D6-A6EK-01 17 79526391 79526391 C A NPLOC4 Missense_Mutation p.G574V 0.25 tolerated(0.1) benign(0.145) TCGA-D6-A6EK-01 18 48327856 48327856 A G MRO Missense_Mutation p.Y164H 0.20 tolerated(0.13) benign(0.046) TCGA-D6-A6EK-01 18 77664035 77664035 G A PQLC1 Missense_Mutation p.R253C 0.20 deleterious(0.04) benign(0.002) TCGA-D6-A6EK-01 19 13035338 13035338 T C FARSA Missense_Mutation p.I400V 0.23 tolerated(0.14) benign(0.08) TCGA-D6-A6EK-01 19 17988632 17988632 C A SLC5A5 Missense_Mutation p.Q267K 0.22 deleterious(0) probably_damaging(0.992) TCGA-D6-A6EK-01 19 23927979 23927979 C A ZNF681 Nonsense_Mutation p.G125* 0.10 TCGA-D6-A6EK-01 19 2767677 2767677 G A SGTA Silent p.I36I 0.24 TCGA-D6-A6EK-01 19 31768178 31768178 C A TSHZ3 Nonsense_Mutation p.E841* 0.26 TCGA-D6-A6EK-01 19 39691035 39691035 C T NCCRP1 Silent p.L200L 0.16 TCGA-D6-A6EK-01 19 3979344 3979344 C T EEF2 Missense_Mutation p.A566T 0.17 deleterious(0.04) benign(0.081) TCGA-D6-A6EK-01 19 41812381 41812381 C T HNRNPUL1 Nonsense_Mutation p.Q828* 0.28 TCGA-D6-A6EK-01 19 46289614 46289614 G A DMWD Silent p.T380T 0.25 TCGA-D6-A6EK-01 19 50550296 50550296 A T ZNF473 Nonsense_Mutation p.K866* 0.24 TCGA-D6-A6EK-01 19 54244625 54244625 C G MIR517C RNA 0.14 TCGA-D6-A6EK-01 19 54818653 54818653 C T LILRA5 3'UTR 0.16 TCGA-D6-A6EK-01 19 681501 681501 G A FSTL3 Missense_Mutation p.R225H 0.18 deleterious(0.01) possibly_damaging(0.847) TCGA-D6-A6EK-01 1 110607340 110607340 G T ALX3 Missense_Mutation p.R155S 0.21 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EK-01 1 112999853 112999853 C T CTTNBP2NL Missense_Mutation p.P580L 0.23 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EK-01 1 116605438 116605438 G A SLC22A15 Silent p.L409L 0.24 TCGA-D6-A6EK-01 1 118476009 118476009 A G WDR3 Missense_Mutation p.K23E 0.24 tolerated(0.14) benign(0.063) TCGA-D6-A6EK-01 1 150482213 150482213 C T ECM1 Silent p.G66G 0.18 TCGA-D6-A6EK-01 1 169509963 169509963 T C F5 Silent p.S1455S 0.30 TCGA-D6-A6EK-01 1 179041168 179041168 C T FAM20B Silent p.D373D 0.16 TCGA-D6-A6EK-01 1 202725520 202725520 C T KDM5B Missense_Mutation p.R441Q 0.20 deleterious(0.03) possibly_damaging(0.489) TCGA-D6-A6EK-01 1 3328722 3328722 C T PRDM16 Missense_Mutation p.A654V 0.30 tolerated(0.62) benign(0.005) TCGA-D6-A6EK-01 1 36181873 36181874 - C C1orf216 Frame_Shift_Ins p.D17Gfs*27 0.23 TCGA-D6-A6EK-01 1 41012488 41012488 G T ZNF684 Missense_Mutation p.G165W 0.31 deleterious(0) possibly_damaging(0.669) TCGA-D6-A6EK-01 1 57480884 57480884 A G DAB1 Silent p.V372V 0.26 TCGA-D6-A6EK-01 1 6526162 6526162 C T TNFRSF25 Silent p.E2E 0.35 TCGA-D6-A6EK-01 1 74808611 74808611 A T FPGT-TNNI3K Missense_Mutation p.Q370H 0.15 tolerated(0.19) benign(0.011) TCGA-D6-A6EK-01 1 84876670 84876670 T C DNASE2B Missense_Mutation p.Y179H 0.32 deleterious(0) possibly_damaging(0.905) TCGA-D6-A6EK-01 1 91818136 91818136 T C HFM1 Missense_Mutation p.Y635C 0.14 deleterious(0) probably_damaging(1) TCGA-D6-A6EK-01 1 91841183 91841183 G - HFM1 Frame_Shift_Del p.C500Afs*12 0.11 TCGA-D6-A6EK-01 1 98206024 98206024 C A DPYD Missense_Mutation p.C82F 0.17 deleterious(0) probably_damaging(1) TCGA-D6-A6EK-01 20 16360435 16360435 C T KIF16B Missense_Mutation p.D738N 0.16 tolerated(0.1) benign(0.16) TCGA-D6-A6EK-01 20 33077107 33077107 A G ITCH Silent p.E751E 0.21 TCGA-D6-A6EK-01 20 60427861 60427861 G C CDH4 Missense_Mutation p.D262H 0.22 deleterious(0) probably_damaging(0.997) TCGA-D6-A6EK-01 20 62326924 62326924 G C RTEL1 Intron 0.16 TCGA-D6-A6EK-01 21 37713740 37713740 G A MORC3 Missense_Mutation p.D218N 0.12 deleterious(0) probably_damaging(1) TCGA-D6-A6EK-01 22 35947786 35947786 G T RASD2 Nonsense_Mutation p.E170* 0.25 TCGA-D6-A6EK-01 22 38512167 38512167 G A PLA2G6 Silent p.L598L 0.13 TCGA-D6-A6EK-01 22 41252609 41252609 G A ST13 5'UTR 0.33 TCGA-D6-A6EK-01 22 41257531 41257531 T - DNAJB7 Frame_Shift_Del p.Y157Ifs*63 0.19 TCGA-D6-A6EK-01 22 51011377 51011377 A G CPT1B Missense_Mutation p.S427P 0.16 tolerated(0.14) benign(0.116) TCGA-D6-A6EK-01 2 101009787 101009787 C G CHST10 Missense_Mutation p.D331H 0.14 tolerated(0.14) possibly_damaging(0.877) TCGA-D6-A6EK-01 2 112786351 112786351 C T MERTK Silent p.S970S 0.41 TCGA-D6-A6EK-01 2 133539877 133539877 C A NCKAP5 Missense_Mutation p.G1503W 0.38 deleterious(0) probably_damaging(0.995) TCGA-D6-A6EK-01 2 135738623 135738623 T C MAP3K19 Missense_Mutation p.T1230A 0.39 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EK-01 2 152490306 152490306 C A NEB Missense_Mutation p.M3092I 0.36 benign(0.155) TCGA-D6-A6EK-01 2 162865771 162865771 G A DPP4 Nonsense_Mutation p.R623* 0.51 TCGA-D6-A6EK-01 2 178095647 178095647 G A NFE2L2 Missense_Mutation p.L562F 0.40 deleterious(0.01) possibly_damaging(0.823) TCGA-D6-A6EK-01 2 179590206 179590206 C T TTN Missense_Mutation p.V6909I 0.29 TCGA-D6-A6EK-01 2 196726634 196726634 G T DNAH7 Silent p.R2515R 0.41 TCGA-D6-A6EK-01 2 198949847 198949847 A T PLCL1 Missense_Mutation p.M536L 0.43 deleterious(0.03) benign(0) TCGA-D6-A6EK-01 2 202149973 202149973 C T CASP8 Nonsense_Mutation p.R472* 0.48 TCGA-D6-A6EK-01 2 203847093 203847106 CTGTTCATCGGATT - CARF Frame_Shift_Del p.H665Gfs*19 0.37 TCGA-D6-A6EK-01 2 203847117 203847117 A T CARF Missense_Mutation p.D671V 0.27 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-D6-A6EK-01 2 204078257 204078257 A T NBEAL1 Missense_Mutation p.N2622Y 0.44 deleterious(0) benign(0.139) TCGA-D6-A6EK-01 2 223389711 223389711 G T SGPP2 Missense_Mutation p.V203L 0.26 deleterious(0) probably_damaging(0.997) TCGA-D6-A6EK-01 2 228883495 228883495 G A SPHKAP Missense_Mutation p.P692L 0.36 deleterious(0.05) benign(0.206) TCGA-D6-A6EK-01 2 241439473 241439473 C A ANKMY1 Missense_Mutation p.R814L 0.28 deleterious(0) possibly_damaging(0.687) TCGA-D6-A6EK-01 2 25383905 25383905 G A POMC 3'UTR 0.14 TCGA-D6-A6EK-01 2 25457192 25457192 G A DNMT3A Missense_Mutation p.R899C 0.16 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EK-01 2 29296997 29296997 A T C2orf71 Missense_Mutation p.L44Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EK-01 2 42531679 42531679 C A EML4 Missense_Mutation p.T652K 0.16 deleterious(0.02) probably_damaging(0.922) TCGA-D6-A6EK-01 2 74588546 74588546 G A DCTN1 3'UTR 0.21 TCGA-D6-A6EK-01 2 86258661 86258661 C T POLR1A Missense_Mutation p.R1457Q 0.21 tolerated(0.48) benign(0.001) TCGA-D6-A6EK-01 2 88082578 88082578 C A RGPD2 Missense_Mutation p.R1322I 0.22 deleterious(0.03) possibly_damaging(0.506) TCGA-D6-A6EK-01 2 88472718 88472718 G T THNSL2 Missense_Mutation p.G17W 0.15 deleterious(0.01) possibly_damaging(0.812) TCGA-D6-A6EK-01 2 88482302 88482302 A G THNSL2 Missense_Mutation p.Q296R 0.05 tolerated(0.15) benign(0.022) TCGA-D6-A6EK-01 2 89399811 89399811 A G IGKV1-16 Missense_Mutation p.L6P 0.28 tolerated_low_confidence(1) benign(0) TCGA-D6-A6EK-01 2 90139121 90139121 T C IGKV1D-16 Missense_Mutation p.L6P 0.12 tolerated_low_confidence(1) benign(0) TCGA-D6-A6EK-01 3 109023515 109023515 C T DPPA2 Missense_Mutation p.V221I 0.21 tolerated(0.28) benign(0.013) TCGA-D6-A6EK-01 3 114069659 114069659 C A ZBTB20 Missense_Mutation p.Q422H 0.19 deleterious_low_confidence(0.02) benign(0.276) TCGA-D6-A6EK-01 3 128181979 128181979 T A DNAJB8 Missense_Mutation p.D37V 0.21 deleterious(0) possibly_damaging(0.48) TCGA-D6-A6EK-01 3 156009649 156009649 C - KCNAB1 Intron 0.24 TCGA-D6-A6EK-01 3 164714334 164714334 C T SI Missense_Mutation p.A1561T 0.24 tolerated(0.51) benign(0.094) TCGA-D6-A6EK-01 3 180320144 180320144 G T TTC14 Missense_Mutation p.R32L 0.11 deleterious(0.04) possibly_damaging(0.598) TCGA-D6-A6EK-01 3 183646567 183646567 C T ABCC5 Missense_Mutation p.D1301N 0.20 tolerated(0.3) benign(0.024) TCGA-D6-A6EK-01 3 195706702 195706702 G A SDHAP1 RNA 0.21 TCGA-D6-A6EK-01 3 21478515 21478515 G T ZNF385D Nonsense_Mutation p.S207* 0.20 TCGA-D6-A6EK-01 3 52457249 52457249 G A PHF7 Silent p.K354K 0.20 TCGA-D6-A6EK-01 3 53260883 53260883 T C TKT Missense_Mutation p.I537V 0.24 tolerated(0.77) benign(0.002) TCGA-D6-A6EK-01 3 57561386 57561386 T C ARF4 Silent p.E115E 0.28 TCGA-D6-A6EK-01 3 64526828 64526828 C A ADAMTS9 Missense_Mutation p.A1822S 0.18 deleterious(0.05) probably_damaging(0.957) TCGA-D6-A6EK-01 3 65438991 65438991 C A MAGI1 Missense_Mutation p.W328C 0.16 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EK-01 3 93603706 93603706 C A PROS1 Missense_Mutation p.W453L 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-D6-A6EK-01 3 9512475 9512475 T A SETD5 Nonsense_Mutation p.C1019* 0.16 TCGA-D6-A6EK-01 3 9876627 9876627 G A TTLL3 Intron 0.24 TCGA-D6-A6EK-01 3 99513727 99513727 G A COL8A1 Missense_Mutation p.G328R 0.15 deleterious(0) unknown(0) TCGA-D6-A6EK-01 4 10445837 10445837 C G ZNF518B Missense_Mutation p.G706R 0.19 tolerated(0.46) benign(0.317) TCGA-D6-A6EK-01 4 10533898 10533898 G A CLNK Silent p.S204S 0.33 TCGA-D6-A6EK-01 4 126239890 126239890 A T FAT4 Missense_Mutation p.N775I 0.22 possibly_damaging(0.58) TCGA-D6-A6EK-01 4 187554873 187554873 C A FAT1 Nonsense_Mutation p.E1430* 0.27 TCGA-D6-A6EK-01 4 42895620 42895620 G C GRXCR1 Missense_Mutation p.V113L 0.23 deleterious(0) probably_damaging(0.99) TCGA-D6-A6EK-01 4 66467959 66467959 C A EPHA5 Missense_Mutation p.V104L 0.28 deleterious(0.01) probably_damaging(0.97) TCGA-D6-A6EK-01 4 7043919 7043919 C T CCDC96 Silent p.L249L 0.21 TCGA-D6-A6EK-01 4 73986653 73986653 G A ANKRD17 Missense_Mutation p.T1265I 0.20 possibly_damaging(0.516) TCGA-D6-A6EK-01 4 76805746 76805746 C T PPEF2 Splice_Site p.X249_splice 0.20 TCGA-D6-A6EK-01 5 102342554 102342554 G T PAM Missense_Mutation p.G618V 0.23 deleterious(0) probably_damaging(1) TCGA-D6-A6EK-01 5 129030413 129030413 G A ADAMTS19 Missense_Mutation p.G934E 0.13 deleterious(0) probably_damaging(0.996) TCGA-D6-A6EK-01 5 140537434 140590332 5:140537434-140590332 - PCDHB7 large deletion 0.09 TCGA-D6-A6EK-01 5 140772972 140772972 C - PCDHGA8 Frame_Shift_Del p.R198Afs*33 0.23 TCGA-D6-A6EK-01 5 140793473 140793473 C T PCDHGA10 Missense_Mutation p.P244L 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D6-A6EK-01 5 140798237 140798237 G C PCDHGB7 Missense_Mutation p.E271Q 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-D6-A6EK-01 5 140905924 140905924 G A DIAPH1 Silent p.P1126P 0.26 TCGA-D6-A6EK-01 5 180040050 180040050 C T FLT4 Missense_Mutation p.G1131D 0.04 deleterious(0) probably_damaging(1) TCGA-D6-A6EK-01 5 180055919 180055919 C T FLT4 Missense_Mutation p.V356M 0.13 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EK-01 5 22143162 22143162 C A CDH12 Intron 0.38 TCGA-D6-A6EK-01 5 2748564 2748564 C A IRX2 Missense_Mutation p.A420S 0.35 tolerated_low_confidence(0.31) benign(0.022) TCGA-D6-A6EK-01 5 36152258 36152258 G A SKP2 5'UTR 0.14 TCGA-D6-A6EK-01 5 45262714 45262714 C G HCN1 Missense_Mutation p.R661T 0.22 tolerated_low_confidence(0.58) benign(0.025) TCGA-D6-A6EK-01 5 63256403 63256403 C T HTR1A Missense_Mutation p.G382S 0.22 tolerated(0.48) possibly_damaging(0.524) TCGA-D6-A6EK-01 5 6620375 6620375 C A NSUN2 Missense_Mutation p.R220L 0.25 deleterious(0) probably_damaging(1) TCGA-D6-A6EK-01 5 78329100 78329100 T C DMGDH Missense_Mutation p.E442G 0.26 tolerated(0.33) benign(0.045) TCGA-D6-A6EK-01 5 79952339 79952339 C T MSH3 Missense_Mutation p.S116F 0.18 tolerated_low_confidence(0.13) benign(0.006) TCGA-D6-A6EK-01 5 94994441 94994441 C T SPATA9 Silent p.P217P 0.17 TCGA-D6-A6EK-01 6 112528290 112528290 G T LAMA4 Silent p.I118I 0.23 TCGA-D6-A6EK-01 6 127768624 127768624 C T KIAA0408 Silent p.S280S 0.20 TCGA-D6-A6EK-01 6 146673616 146673616 G A GRM1 Missense_Mutation p.G473R 0.16 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EK-01 6 15501415 15501415 A T JARID2 Silent p.T741T 0.24 TCGA-D6-A6EK-01 6 161771199 161771199 C G PARK2 Missense_Mutation p.E444Q 0.17 tolerated(0.11) benign(0.333) TCGA-D6-A6EK-01 6 22569841 22569841 G A HDGFL1 Missense_Mutation p.D13N 0.15 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EK-01 6 28539706 28539706 T A SCAND3 Missense_Mutation p.Q1320H 0.34 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-D6-A6EK-01 6 29054372 29054372 A G OR2B3 Silent p.Y218Y 0.15 TCGA-D6-A6EK-01 6 29910587 29910587 G T HLA-A Nonsense_Mutation p.E43* 0.09 TCGA-D6-A6EK-01 6 31541268 31541268 C G LTA Missense_Mutation p.S139C 0.16 deleterious(0) probably_damaging(0.994) TCGA-D6-A6EK-01 6 40400630 40400630 T C LRFN2 Missense_Mutation p.M75V 0.19 deleterious(0) probably_damaging(0.997) TCGA-D6-A6EK-01 6 43030739 43030739 G T KLC4 Nonsense_Mutation p.E133* 0.18 TCGA-D6-A6EK-01 7 106508689 106508689 C T PIK3CG Missense_Mutation p.T228I 0.38 tolerated(0.12) benign(0.281) TCGA-D6-A6EK-01 7 122755657 122755657 C T SLC13A1 Missense_Mutation p.G568D 0.42 deleterious(0) probably_damaging(0.986) TCGA-D6-A6EK-01 7 139796841 139796841 T C KDM7A Missense_Mutation p.I675V 0.47 tolerated(0.33) benign(0.001) TCGA-D6-A6EK-01 7 47408655 47408655 C T TNS3 Missense_Mutation p.G530S 0.18 tolerated(0.13) benign(0.082) TCGA-D6-A6EK-01 7 51093059 51093059 G C COBL Missense_Mutation p.S1172C 0.14 tolerated(0.17) probably_damaging(0.935) TCGA-D6-A6EK-01 7 53104138 53104138 G T POM121L12 Missense_Mutation p.Q258H 0.27 tolerated_low_confidence(0.13) possibly_damaging(0.891) TCGA-D6-A6EK-01 7 73153089 73153089 C G ABHD11 Missense_Mutation p.W13C 0.10 tolerated_low_confidence(0.19) benign(0.014) TCGA-D6-A6EK-01 7 82545411 82545411 C A PCLO Missense_Mutation p.R3964L 0.33 unknown(0) TCGA-D6-A6EK-01 7 90895775 90895775 C T FZD1 Missense_Mutation p.T527I 0.15 tolerated(0.09) possibly_damaging(0.775) TCGA-D6-A6EK-01 8 104709402 104709402 G T RIMS2 Missense_Mutation p.A89S 0.16 tolerated_low_confidence(0.25) benign(0.321) TCGA-D6-A6EK-01 8 13947851 13947851 T G SGCZ 3'UTR 0.20 TCGA-D6-A6EK-01 8 25249422 25249422 G A DOCK5 Missense_Mutation p.A1456T 0.19 tolerated(0.37) benign(0.05) TCGA-D6-A6EK-01 8 35608173 35608173 T A UNC5D Missense_Mutation p.L670Q 0.30 tolerated(0.05) probably_damaging(0.976) TCGA-D6-A6EK-01 8 42026608 42026608 G T AP3M2 3'UTR 0.52 TCGA-D6-A6EK-01 8 55371663 55371663 T C SOX17 Missense_Mutation p.V118A 0.23 deleterious(0) probably_damaging(0.973) TCGA-D6-A6EK-01 8 62438566 62438566 C T ASPH Missense_Mutation p.D624N 0.11 tolerated(0.06) benign(0.328) TCGA-D6-A6EK-01 8 67786675 67786675 C T MCMDC2 Missense_Mutation p.A70V 0.10 tolerated(0.12) benign(0.005) TCGA-D6-A6EK-01 8 72755775 72755775 C A RP11-383H13.1 Missense_Mutation p.H47N 0.24 unknown(0) TCGA-D6-A6EK-01 8 87242429 87242429 G A SLC7A13 Silent p.I26I 0.15 TCGA-D6-A6EK-01 9 113170218 113170218 G T SVEP1 Silent p.I2554I 0.32 TCGA-D6-A6EK-01 9 131022867 131022867 C T GOLGA2 Silent p.A518A 0.46 TCGA-D6-A6EK-01 9 138395634 138395634 C T MRPS2 Silent p.L182L 0.37 TCGA-D6-A6EK-01 9 139397672 139397672 C - NOTCH1 Frame_Shift_Del p.G1710Afs*88 0.30 TCGA-D6-A6EK-01 9 140469251 140469251 C T DPH7 Silent p.E140E 0.20 TCGA-D6-A6EK-01 9 140777380 140777380 G A CACNA1B Intron 0.10 TCGA-D6-A6EK-01 X 101572235 101572235 C T NXF2 Intron 0.18 TCGA-D6-A6EK-01 X 123499672 123499672 G A SH2D1A Missense_Mutation p.E67K 0.41 tolerated(0.05) possibly_damaging(0.461) TCGA-D6-A6EK-01 X 148037675 148037675 T A AFF2 Silent p.P700P 0.37 TCGA-D6-A6EK-01 X 154158240 154158240 A G F8 Silent p.D1275D 0.30 TCGA-D6-A6EK-01 X 36156478 36156478 T A CHDC2 Missense_Mutation p.F386Y 0.50 deleterious(0) probably_damaging(0.966) TCGA-D6-A6EK-01 X 41073879 41073879 C - USP9X Frame_Shift_Del p.L1750Ffs*14 0.30 TCGA-D6-A6EK-01 X 53581597 53581597 T C HUWE1 Missense_Mutation p.I2831V 0.45 benign(0.031) TCGA-D6-A6EK-01 X 69507127 69507127 G A PDZD11 Silent p.Y129Y 0.32 TCGA-D6-A6EK-01 Y 4968437 4968437 C T PCDH11Y Missense_Mutation p.P940S 0.45 tolerated(0.08) probably_damaging(0.939) TCGA-D6-A6EM-01 10 120829137 120829137 G A EIF3A Silent p.H257H 0.19 TCGA-D6-A6EM-01 10 124249010 124249010 C A HTRA1 Silent p.I215I 0.16 TCGA-D6-A6EM-01 10 24762403 24762403 A T KIAA1217 Missense_Mutation p.S365C 0.30 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EM-01 10 29751233 29751234 - C SVIL Frame_Shift_Ins p.E2126Rfs*5 0.14 TCGA-D6-A6EM-01 11 123813817 123813817 C T OR6T1 Silent p.S243S 0.28 TCGA-D6-A6EM-01 11 123893848 123893848 C T OR10G9 Silent p.I43I 0.18 TCGA-D6-A6EM-01 11 2154380 2154380 C T IGF2 Missense_Mutation p.R183H 0.19 deleterious(0) probably_damaging(1) TCGA-D6-A6EM-01 11 35454378 35454378 G A PAMR1 Silent p.I580I 0.21 TCGA-D6-A6EM-01 11 46690952 46690952 A T ATG13 Splice_Site p.X483_splice 0.13 TCGA-D6-A6EM-01 11 57085349 57085349 G A TNKS1BP1 Silent p.S247S 0.16 TCGA-D6-A6EM-01 11 62561861 62561861 C T NXF1 Silent p.E543E 0.17 TCGA-D6-A6EM-01 11 63666265 63666265 G T MARK2 Missense_Mutation p.G145V 0.26 deleterious(0) probably_damaging(1) TCGA-D6-A6EM-01 11 65486270 65486270 C T RNASEH2C 3'UTR 0.18 TCGA-D6-A6EM-01 11 71939816 71939816 C T INPPL1 Missense_Mutation p.T148I 0.18 tolerated(0.16) possibly_damaging(0.68) TCGA-D6-A6EM-01 12 10999783 10999783 G T PRR4 Missense_Mutation p.P95H 0.13 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-D6-A6EM-01 12 133197147 133197147 G A P2RX2 Missense_Mutation p.S251N 0.11 tolerated(1) benign(0.001) TCGA-D6-A6EM-01 12 133423707 133423707 C T CHFR Missense_Mutation p.A565T 0.29 tolerated(0.3) benign(0.018) TCGA-D6-A6EM-01 12 52825420 52825420 G A KRT75 Silent p.D259D 0.22 TCGA-D6-A6EM-01 12 72289857 72289857 T C TBC1D15 Splice_Site p.X345_splice 0.20 TCGA-D6-A6EM-01 12 75804313 75804313 A G GLIPR1L2 Missense_Mutation p.K112E 0.35 tolerated(0.6) benign(0.253) TCGA-D6-A6EM-01 12 95676135 95676135 G A VEZT Missense_Mutation p.R348Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EM-01 13 37269387 37269387 C T SERTM1 Missense_Mutation p.L58F 0.09 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-D6-A6EM-01 13 77589583 77589583 G A FBXL3 Silent p.L202L 0.34 TCGA-D6-A6EM-01 14 102356620 102356620 G A PPP2R5C Missense_Mutation p.E257K 0.12 deleterious(0) probably_damaging(0.982) TCGA-D6-A6EM-01 14 105677540 105677540 C T BRF1 Missense_Mutation p.D639N 0.14 tolerated(0.22) benign(0.096) TCGA-D6-A6EM-01 14 22102491 22102491 G A OR10G2 Missense_Mutation p.R170C 0.10 deleterious(0.05) benign(0.022) TCGA-D6-A6EM-01 14 81994065 81994065 C T SEL1L Missense_Mutation p.D30N 0.15 tolerated_low_confidence(0.16) possibly_damaging(0.521) TCGA-D6-A6EM-01 15 25492314 25492314 C T SNORD115-40 3'Flank 0.50 TCGA-D6-A6EM-01 15 58001333 58001333 A G POLR2M Missense_Mutation p.S179G 0.18 tolerated(0.49) benign(0.004) TCGA-D6-A6EM-01 15 69113049 69113049 C T ANP32A Silent p.R14R 0.22 TCGA-D6-A6EM-01 15 70368499 70368499 T C TLE3 Splice_Site p.X79_splice 0.18 TCGA-D6-A6EM-01 15 84705637 84705637 G A ADAMTSL3 Missense_Mutation p.D1623N 0.26 tolerated(0.32) benign(0.001) TCGA-D6-A6EM-01 17 30981575 30981575 C T MYO1D Missense_Mutation p.V804I 0.27 tolerated(0.41) benign(0.129) TCGA-D6-A6EM-01 17 3628634 3628634 C T GSG2 Nonsense_Mutation p.Q469* 0.15 TCGA-D6-A6EM-01 17 40948722 40948722 C A WNK4 3'UTR 0.15 TCGA-D6-A6EM-01 17 43912044 43912044 C T CRHR1 Missense_Mutation p.R417C 0.12 deleterious(0) possibly_damaging(0.856) TCGA-D6-A6EM-01 17 48559727 48559727 G A RSAD1 Silent p.P250P 0.26 TCGA-D6-A6EM-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.27 deleterious(0) probably_damaging(1) TCGA-D6-A6EM-01 17 79827748 79827749 - C ARHGDIA Frame_Shift_Ins p.E20Gfs*3 0.24 TCGA-D6-A6EM-01 18 24496575 24496575 C A CHST9 Missense_Mutation p.G327V 0.13 deleterious(0) probably_damaging(1) TCGA-D6-A6EM-01 18 44561670 44561670 G A TCEB3B 5'UTR 0.12 TCGA-D6-A6EM-01 19 14273468 14273468 T C LPHN1 Missense_Mutation p.Y387C 0.13 deleterious(0) probably_damaging(0.971) TCGA-D6-A6EM-01 19 42793356 42793356 C G CIC Nonsense_Mutation p.Y386* 0.18 TCGA-D6-A6EM-01 19 52327257 52327257 G A FPR3 Missense_Mutation p.A86T 0.16 deleterious(0.02) probably_damaging(0.925) TCGA-D6-A6EM-01 19 57987107 57987107 C T AC004076.9 Silent p.E40E 0.14 TCGA-D6-A6EM-01 19 58153550 58153550 C T ZNF211 3'UTR 0.13 TCGA-D6-A6EM-01 19 6702579 6702579 C T C3 Missense_Mutation p.E753K 0.18 deleterious(0.03) benign(0.079) TCGA-D6-A6EM-01 1 114522119 114522119 G A OLFML3 5'UTR 0.15 TCGA-D6-A6EM-01 1 156128598 156128598 A T SEMA4A Missense_Mutation p.H184L 0.30 tolerated(0.13) benign(0.284) TCGA-D6-A6EM-01 1 157771972 157771972 G A FCRL1 Missense_Mutation p.R207C 0.06 tolerated(0.09) benign(0.189) TCGA-D6-A6EM-01 1 168269713 168269713 A T TBX19 Missense_Mutation p.Y240F 0.29 tolerated(0.05) benign(0.008) TCGA-D6-A6EM-01 1 220156621 220156621 T A EPRS Missense_Mutation p.K1070N 0.19 deleterious(0.02) possibly_damaging(0.643) TCGA-D6-A6EM-01 1 231096993 231096993 A T TTC13 Missense_Mutation p.C110S 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.761) TCGA-D6-A6EM-01 1 235606175 235606175 A G TBCE Missense_Mutation p.I450V 0.24 tolerated(0.06) benign(0.033) TCGA-D6-A6EM-01 1 53443924 53443924 C T SCP2 Missense_Mutation p.A237V 0.07 tolerated(0.44) benign(0.004) TCGA-D6-A6EM-01 20 32685276 32685276 A G EIF2S2 Silent p.S160S 0.17 TCGA-D6-A6EM-01 20 50051779 50051779 C T NFATC2 Missense_Mutation p.V660I 0.10 deleterious(0.04) probably_damaging(0.967) TCGA-D6-A6EM-01 20 60887781 60887781 C T LAMA5 Missense_Mutation p.R3045Q 0.23 benign(0.002) TCGA-D6-A6EM-01 20 61512130 61512130 C A DIDO1 Missense_Mutation p.Q1726H 0.14 possibly_damaging(0.784) TCGA-D6-A6EM-01 20 8130994 8130994 C G PLCB1 Missense_Mutation p.F51L 0.08 deleterious(0.01) benign(0.165) TCGA-D6-A6EM-01 21 47775531 47775531 G T PCNT Silent p.G642G 0.22 TCGA-D6-A6EM-01 22 16449188 16449188 G A OR11H1 Missense_Mutation p.S206F 0.17 deleterious(0.01) possibly_damaging(0.811) TCGA-D6-A6EM-01 22 19076977 19076977 C T DGCR2 Missense_Mutation p.A36T 0.17 tolerated_low_confidence(0.12) benign(0.364) TCGA-D6-A6EM-01 22 39713632 39713632 C T RPL3 Missense_Mutation p.V67M 0.17 tolerated(0.81) benign(0.033) TCGA-D6-A6EM-01 2 179403801 179403801 G T TTN Missense_Mutation p.T32954N 0.12 TCGA-D6-A6EM-01 2 179629005 179629005 T A TTN Missense_Mutation p.Q3338L 0.32 TCGA-D6-A6EM-01 2 20483149 20483149 T A PUM2 Missense_Mutation p.M464L 0.47 deleterious(0.01) benign(0) TCGA-D6-A6EM-01 2 70475554 70475554 G A TIA1 Silent p.D3D 0.06 TCGA-D6-A6EM-01 2 71206793 71206793 C T ANKRD53 Silent p.G140G 0.47 TCGA-D6-A6EM-01 3 11302214 11302214 A G HRH1 3'UTR 0.12 TCGA-D6-A6EM-01 3 122942410 122942410 A G SEC22A Missense_Mutation p.I63V 0.14 tolerated(0.65) benign(0.06) TCGA-D6-A6EM-01 3 137893475 137893475 G A DBR1 Missense_Mutation p.P55S 0.14 tolerated(0.06) probably_damaging(0.922) TCGA-D6-A6EM-01 3 142731100 142731100 A T U2SURP Missense_Mutation p.S43C 0.16 deleterious_low_confidence(0) benign(0.206) TCGA-D6-A6EM-01 3 189582020 189582020 G T TP63 Splice_Site p.X194_splice 0.46 TCGA-D6-A6EM-01 3 19431991 19431991 G A KCNH8 Missense_Mutation p.R277Q 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-D6-A6EM-01 3 46713390 46713390 C T ALS2CL Missense_Mutation p.V890M 0.22 deleterious(0) probably_damaging(0.981) TCGA-D6-A6EM-01 3 49570261 49570261 A - DAG1 Frame_Shift_Del p.I773Sfs*70 0.17 TCGA-D6-A6EM-01 3 51747075 51747075 G A GRM2 Missense_Mutation p.R346H 0.17 tolerated(0.09) probably_damaging(0.932) TCGA-D6-A6EM-01 3 53265501 53265501 G C TKT Missense_Mutation p.Q280E 0.11 tolerated(0.43) benign(0.002) TCGA-D6-A6EM-01 3 53787615 53787615 A G CACNA1D Missense_Mutation p.K1251R 0.05 tolerated(0.35) benign(0.013) TCGA-D6-A6EM-01 3 53914080 53914080 A T ACTR8 Silent p.I60I 0.18 TCGA-D6-A6EM-01 3 57614608 57614608 A C DENND6A Nonsense_Mutation p.L542* 0.10 TCGA-D6-A6EM-01 4 103518735 103518735 C T NFKB1 Silent p.F518F 0.18 TCGA-D6-A6EM-01 4 134073831 134073831 A G PCDH10 Missense_Mutation p.T846A 0.26 tolerated(0.43) benign(0.002) TCGA-D6-A6EM-01 4 38777143 38777143 C G TLR10 Missense_Mutation p.E23D 0.21 deleterious(0) benign(0.035) TCGA-D6-A6EM-01 4 39448687 39448687 G A KLB Missense_Mutation p.D781N 0.13 tolerated(0.05) possibly_damaging(0.708) TCGA-D6-A6EM-01 5 135383002 135383002 C G TGFBI Missense_Mutation p.H222D 0.11 deleterious(0.03) probably_damaging(0.99) TCGA-D6-A6EM-01 5 140957875 140957875 C T DIAPH1 Silent p.V360V 0.31 TCGA-D6-A6EM-01 5 154395835 154395835 C T KIF4B Missense_Mutation p.H806Y 0.14 tolerated(0.05) benign(0.044) TCGA-D6-A6EM-01 5 34945854 34945854 A G DNAJC21 Intron 0.12 TCGA-D6-A6EM-01 6 133135878 133135879 AA - RPS12 5'UTR 0.21 TCGA-D6-A6EM-01 6 142468531 142468531 A G VTA1 Missense_Mutation p.Y36C 0.20 deleterious(0) probably_damaging(0.992) TCGA-D6-A6EM-01 6 144852227 144852227 T A UTRN Missense_Mutation p.H1982Q 0.31 tolerated(0.35) benign(0.371) TCGA-D6-A6EM-01 6 31915185 31915185 G A CFB Missense_Mutation p.R684H 0.14 tolerated(0.14) probably_damaging(0.991) TCGA-D6-A6EM-01 6 33260029 33260030 - A RGL2 Frame_Shift_Ins p.L729Pfs*28 0.19 TCGA-D6-A6EM-01 6 38850794 38850794 A T DNAH8 Missense_Mutation p.N2439I 0.11 benign(0.255) TCGA-D6-A6EM-01 6 4125485 4125485 C T ECI2 Missense_Mutation p.R265K 0.37 tolerated(0.65) benign(0.005) TCGA-D6-A6EM-01 7 149171709 149171709 G A ZNF746 Silent p.T568T 0.17 TCGA-D6-A6EM-01 7 44530100 44530100 G A NUDCD3 Missense_Mutation p.L34F 0.41 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EM-01 7 82578803 82578803 C T PCLO Missense_Mutation p.E3701K 0.15 unknown(0) TCGA-D6-A6EM-01 8 144891803 144891803 G A SCRIB Missense_Mutation p.P539L 0.11 benign(0.003) TCGA-D6-A6EM-01 8 144942424 144942424 G T EPPK1 Silent p.A1666A 0.30 TCGA-D6-A6EM-01 8 51569523 51569523 G A SNTG1 Missense_Mutation p.V302M 0.14 tolerated(0.34) benign(0.004) TCGA-D6-A6EM-01 8 53452399 53452399 G A FAM150A Missense_Mutation p.T106M 0.33 tolerated(0.18) benign(0.049) TCGA-D6-A6EM-01 8 72184072 72184072 C T EYA1 Missense_Mutation p.R296H 0.10 tolerated(0.37) probably_damaging(0.92) TCGA-D6-A6EM-01 9 104184018 104184018 G T ALDOB 3'UTR 0.29 TCGA-D6-A6EM-01 9 13224399 13224399 C T MPDZ Missense_Mutation p.D123N 0.11 tolerated(0.14) benign(0.402) TCGA-D6-A6EM-01 9 21971207 21971207 C - CDKN2A Frame_Shift_Del p.V51Sfs*2 0.32 TCGA-D6-A6EM-01 9 35310528 35310528 G A UNC13B Missense_Mutation p.E276K 0.11 deleterious_low_confidence(0.01) benign(0.257) TCGA-D6-A6EM-01 9 72131733 72131733 G T APBA1 Missense_Mutation p.Q132K 0.23 tolerated_low_confidence(0.09) benign(0.022) TCGA-D6-A6EM-01 X 103499135 103499135 G A ESX1 Missense_Mutation p.S69L 0.10 tolerated(0.67) possibly_damaging(0.602) TCGA-D6-A6EM-01 X 105280480 105280480 T A SERPINA7 Missense_Mutation p.Q190H 0.22 tolerated(0.07) benign(0.02) TCGA-D6-A6EM-01 X 110002960 110002960 C A CHRDL1 Missense_Mutation p.R77L 0.09 deleterious(0.01) probably_damaging(1) TCGA-D6-A6EM-01 X 11197558 11197558 A C ARHGAP6 Missense_Mutation p.F448L 0.27 deleterious(0.02) probably_damaging(0.98) TCGA-D6-A6EM-01 X 152159047 152159047 G A PNMA5 Nonsense_Mutation p.Q366* 0.20 TCGA-D6-A6EM-01 X 15381434 15381434 G C FIGF Missense_Mutation p.S33C 0.12 deleterious(0.01) possibly_damaging(0.711) TCGA-D6-A6EM-01 X 83128513 83128513 G A CYLC1 Missense_Mutation p.R266K 0.16 tolerated(1) benign(0.14) TCGA-D6-A6EM-01 X 83129517 83129517 C T CYLC1 Missense_Mutation p.P601S 0.18 deleterious(0.03) probably_damaging(0.98) TCGA-D6-A6EM-01 X 91090443 91090443 C G PCDH11X 5'UTR 0.08 TCGA-D6-A6EM-01 X 91132781 91132781 C A PCDH11X Missense_Mutation p.S514R 0.30 tolerated(0.16) benign(0.219) TCGA-D6-A6EN-01 10 123662084 123662084 C T ATE1 Missense_Mutation p.R212Q 0.29 deleterious(0) probably_damaging(0.988) TCGA-D6-A6EN-01 10 14909272 14909272 C G HSPA14 Nonsense_Mutation p.S395* 0.11 TCGA-D6-A6EN-01 10 15138578 15138578 C G C10orf111 Silent p.V82V 0.28 TCGA-D6-A6EN-01 10 38647361 38647361 C T HSD17B7P2 RNA 0.21 TCGA-D6-A6EN-01 11 118771661 118771662 - C BCL9L Frame_Shift_Ins p.H931Afs*8 0.32 TCGA-D6-A6EN-01 11 3109525 3109525 C G OSBPL5 Silent p.P850P 0.24 TCGA-D6-A6EN-01 11 47776172 47776172 C A FNBP4 Missense_Mutation p.D120Y 0.11 deleterious(0) benign(0.328) TCGA-D6-A6EN-01 11 48267105 48267105 A G OR4X2 Silent p.A150A 0.21 TCGA-D6-A6EN-01 11 533873 533873 C A HRAS Missense_Mutation p.Q61H 0.28 deleterious(0.03) benign(0.068) TCGA-D6-A6EN-01 11 533874 533874 T A HRAS Missense_Mutation p.Q61L 0.27 deleterious(0) possibly_damaging(0.476) TCGA-D6-A6EN-01 11 57075893 57075893 C G TNKS1BP1 Missense_Mutation p.G1431A 0.23 tolerated(0.13) benign(0.041) TCGA-D6-A6EN-01 11 57105968 57105968 C A SSRP1 5'Flank 0.26 TCGA-D6-A6EN-01 11 6807091 6807091 T A OR2AG1 Missense_Mutation p.S275T 0.21 deleterious(0) probably_damaging(1) TCGA-D6-A6EN-01 11 7111346 7111346 G A RBMXL2 Missense_Mutation p.R332Q 0.16 tolerated(0.14) benign(0.001) TCGA-D6-A6EN-01 11 977193 977193 G A AP2A2 Missense_Mutation p.R191Q 0.17 deleterious(0.02) benign(0.353) TCGA-D6-A6EN-01 12 11061430 11061430 C T TAS2R13 Silent p.L156L 0.25 TCGA-D6-A6EN-01 12 26874260 26874260 T A ITPR2 Intron 0.20 TCGA-D6-A6EN-01 12 55420807 55420807 C T NEUROD4 Missense_Mutation p.S195F 0.27 tolerated(0.08) possibly_damaging(0.839) TCGA-D6-A6EN-01 13 100955251 100955251 G C PCCA Missense_Mutation p.G428A 0.17 tolerated(0.18) benign(0.125) TCGA-D6-A6EN-01 13 101844291 101844291 G C NALCN Missense_Mutation p.L581V 0.19 tolerated(0.13) possibly_damaging(0.566) TCGA-D6-A6EN-01 14 104199370 104199370 G C ZFYVE21 3'UTR 0.18 TCGA-D6-A6EN-01 14 107083671 107083671 C T IGHV4-59 Nonsense_Mutation p.W5* 0.09 TCGA-D6-A6EN-01 14 23447645 23447646 - T AJUBA Frame_Shift_Ins p.I339Nfs*50 0.18 TCGA-D6-A6EN-01 14 34269411 34269411 C T NPAS3 Missense_Mutation p.P633L 0.21 deleterious_low_confidence(0.01) benign(0.059) TCGA-D6-A6EN-01 14 94069643 94069643 C A UNC79 Silent p.I1034I 0.23 TCGA-D6-A6EN-01 15 51743860 51743860 C T DMXL2 Missense_Mutation p.G2890R 0.23 tolerated(0.46) possibly_damaging(0.642) TCGA-D6-A6EN-01 15 57836721 57836721 C T CGNL1 Silent p.S1142S 0.38 TCGA-D6-A6EN-01 16 30795057 30795057 G A ZNF629 Missense_Mutation p.R198C 0.23 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EN-01 16 4659674 4659674 G C UBALD1 Nonsense_Mutation p.S165* 0.24 TCGA-D6-A6EN-01 16 64981453 64981453 G T CDH11 3'UTR 0.23 TCGA-D6-A6EN-01 16 74927661 74927661 C T WDR59 Missense_Mutation p.R639Q 0.33 tolerated(0.19) possibly_damaging(0.493) TCGA-D6-A6EN-01 17 11666861 11666861 A C DNAH9 Missense_Mutation p.K2367T 0.23 benign(0.211) TCGA-D6-A6EN-01 17 5064823 5064823 T A USP6 Silent p.R943R 0.32 TCGA-D6-A6EN-01 17 5087404 5087404 T - ZNF594 Frame_Shift_Del p.S50Afs*3 0.29 TCGA-D6-A6EN-01 18 21214078 21214078 G A ANKRD29 Silent p.Y122Y 0.24 TCGA-D6-A6EN-01 18 6263958 6263958 C A L3MBTL4 Missense_Mutation p.E69D 0.13 deleterious(0.05) benign(0.416) TCGA-D6-A6EN-01 18 9936135 9936135 G A VAPA Silent p.P87P 0.08 TCGA-D6-A6EN-01 19 36218439 36218440 - G KMT2B Frame_Shift_Ins p.A1408Gfs*270 0.20 TCGA-D6-A6EN-01 19 38976393 38976393 G A RYR1 Missense_Mutation p.A1700T 0.18 benign(0.02) TCGA-D6-A6EN-01 19 41223947 41223947 T C ITPKC Silent p.L303L 0.23 TCGA-D6-A6EN-01 19 45259540 45259540 G A BCL3 Silent p.L154L 0.18 TCGA-D6-A6EN-01 19 45515201 45515201 C T RELB Silent p.I57I 0.14 TCGA-D6-A6EN-01 19 53573249 53573249 G A ZNF160 Nonsense_Mutation p.Q180* 0.23 TCGA-D6-A6EN-01 19 57326722 57326722 G A PEG3 Missense_Mutation p.R1030W 0.34 deleterious(0.02) benign(0.022) TCGA-D6-A6EN-01 19 57746758 57746758 G T AURKC Silent p.L301L 0.28 TCGA-D6-A6EN-01 19 8122796 8122796 C G CCL25 Missense_Mutation p.A146G 0.21 deleterious(0.01) benign(0.046) TCGA-D6-A6EN-01 1 118512703 118512703 C T SPAG17 Silent p.L2121L 0.20 TCGA-D6-A6EN-01 1 156106898 156106898 C T LMNA Intron 0.27 TCGA-D6-A6EN-01 1 156562233 156562233 A T APOA1BP Missense_Mutation p.D123V 0.20 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EN-01 1 156639587 156639590 CACT - NES Frame_Shift_Del p.V1467Pfs*6 0.21 TCGA-D6-A6EN-01 1 16475080 16475094 GCAGCAGCTCGGGGC - EPHA2 Nonsense_Mutation p.C201_Q206delins* 0.47 TCGA-D6-A6EN-01 1 214557391 214557391 G A PTPN14 Nonsense_Mutation p.Q603* 0.23 TCGA-D6-A6EN-01 1 214830486 214830486 G A CENPF Missense_Mutation p.G2899E 0.25 benign(0.04) TCGA-D6-A6EN-01 1 235291945 235291945 C T TOMM20 Missense_Mutation p.R29Q 0.27 tolerated(0.08) benign(0.377) TCGA-D6-A6EN-01 1 24663185 24663185 G A GRHL3 Silent p.V160V 0.28 TCGA-D6-A6EN-01 1 27189672 27189672 A G SFN 5'UTR 0.66 TCGA-D6-A6EN-01 1 35250780 35250780 C T GJB3 Silent p.L139L 0.23 TCGA-D6-A6EN-01 1 87040331 87040331 C G CLCA4 Missense_Mutation p.L526V 0.21 tolerated(0.06) benign(0.021) TCGA-D6-A6EN-01 20 25436366 25436366 C A NINL Missense_Mutation p.M1300I 0.20 tolerated(0.13) benign(0.008) TCGA-D6-A6EN-01 20 34053609 34053609 C A CEP250 Missense_Mutation p.N95K 0.29 benign(0.067) TCGA-D6-A6EN-01 22 41999360 41999360 G A DESI1 Missense_Mutation p.H106Y 0.24 deleterious(0.02) possibly_damaging(0.604) TCGA-D6-A6EN-01 22 46125410 46125410 C T ATXN10 Silent p.T278T 0.16 TCGA-D6-A6EN-01 2 133542417 133542417 C T NCKAP5 Missense_Mutation p.R656K 0.33 tolerated(1) benign(0.058) TCGA-D6-A6EN-01 2 133543010 133543010 C G NCKAP5 Silent p.G458G 0.50 TCGA-D6-A6EN-01 2 152518695 152518695 G A NEB Missense_Mutation p.S1975L 0.33 probably_damaging(0.995) TCGA-D6-A6EN-01 2 196545452 196545452 C T SLC39A10 Missense_Mutation p.P229L 0.20 tolerated(0.34) benign(0) TCGA-D6-A6EN-01 2 198646521 198646521 C T BOLL Silent p.L30L 0.20 TCGA-D6-A6EN-01 2 202131229 202131229 T G CASP8 Missense_Mutation p.L66R 0.27 deleterious(0) probably_damaging(1) TCGA-D6-A6EN-01 2 230643687 230643687 G T TRIP12 Missense_Mutation p.P1630H 0.21 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EN-01 2 237374200 237374200 C A IQCA1 Missense_Mutation p.D292Y 0.10 deleterious(0.03) possibly_damaging(0.692) TCGA-D6-A6EN-01 2 74459765 74459765 C T SLC4A5 Missense_Mutation p.G869S 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-D6-A6EN-01 3 127682161 127682161 G A KBTBD12 Missense_Mutation p.R541H 0.41 tolerated(0.1) possibly_damaging(0.828) TCGA-D6-A6EN-01 3 195599248 195599248 C T TNK2 Silent p.S513S 0.24 TCGA-D6-A6EN-01 3 27157603 27157603 A G NEK10 Missense_Mutation p.I1126T 0.21 tolerated(0.31) benign(0.01) TCGA-D6-A6EN-01 3 52555493 52555494 TG - STAB1 Frame_Shift_Del p.A2010Sfs*20 0.22 TCGA-D6-A6EN-01 3 52878919 52878919 C A TMEM110 Missense_Mutation p.A156S 0.15 tolerated(0.3) possibly_damaging(0.491) TCGA-D6-A6EN-01 4 1657255 1657255 G A FAM53A Missense_Mutation p.S111L 0.33 tolerated(0.31) benign(0.003) TCGA-D6-A6EN-01 4 185310172 185310172 T C IRF2 Missense_Mutation p.S264G 0.17 deleterious(0.03) benign(0.15) TCGA-D6-A6EN-01 4 187521451 187521451 G A FAT1 Nonsense_Mutation p.Q3902* 0.29 TCGA-D6-A6EN-01 4 41749390 41749390 G A PHOX2B Silent p.I135I 0.28 TCGA-D6-A6EN-01 4 71275591 71275591 C T PROL1 Silent p.I182I 0.28 TCGA-D6-A6EN-01 4 74357800 74357800 C G AFM Missense_Mutation p.A352G 0.13 deleterious(0.01) possibly_damaging(0.753) TCGA-D6-A6EN-01 5 112379227 112379227 C T MCC Missense_Mutation p.R919Q 0.32 deleterious(0.01) benign(0.336) TCGA-D6-A6EN-01 5 123984545 123984545 T C ZNF608 Missense_Mutation p.N511S 0.25 tolerated(0.16) possibly_damaging(0.552) TCGA-D6-A6EN-01 5 140250635 140250635 G A PCDHA11 Silent p.L649L 0.29 TCGA-D6-A6EN-01 5 140799002 140799002 C A PCDHGB7 Missense_Mutation p.R526S 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-D6-A6EN-01 5 140812097 140812097 G A PCDHGA12 Missense_Mutation p.V591M 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D6-A6EN-01 5 177569714 177569714 C A RMND5B Silent p.G90G 0.22 TCGA-D6-A6EN-01 5 24491935 24491935 A G CDH10 Silent p.D542D 0.21 TCGA-D6-A6EN-01 5 31983414 31983414 G A PDZD2 Silent p.A210A 0.29 TCGA-D6-A6EN-01 5 41158815 41158815 C A C6 Silent p.G643G 0.15 TCGA-D6-A6EN-01 5 43506488 43506488 G A C5orf34 Silent p.F98F 0.40 TCGA-D6-A6EN-01 5 74695169 74695169 C T COL4A3BP Missense_Mutation p.S513N 0.20 tolerated(0.22) benign(0.361) TCGA-D6-A6EN-01 6 146480607 146480607 G A GRM1 Missense_Mutation p.R275H 0.06 deleterious(0.02) possibly_damaging(0.553) TCGA-D6-A6EN-01 6 26031885 26031885 C T HIST1H3B Missense_Mutation p.R135K 0.30 tolerated_low_confidence(0.05) possibly_damaging(0.696) TCGA-D6-A6EN-01 6 26217341 26217341 G A HIST1H2AE Missense_Mutation p.G47S 0.24 deleterious_low_confidence(0.03) benign(0.329) TCGA-D6-A6EN-01 6 32024589 32024589 G A TNXB Silent p.A2639A 0.26 TCGA-D6-A6EN-01 6 407546 407546 G A IRF4 Missense_Mutation p.S435N 0.21 tolerated(0.57) benign(0.001) TCGA-D6-A6EN-01 6 43222821 43222821 G A TTBK1 Missense_Mutation p.R204H 0.23 probably_damaging(0.993) TCGA-D6-A6EN-01 7 102106340 102106340 G T LRWD1 Missense_Mutation p.D53Y 0.19 deleterious(0) probably_damaging(1) TCGA-D6-A6EN-01 7 140481411 140481411 C T BRAF Missense_Mutation p.G466E 0.27 deleterious(0) probably_damaging(0.911) TCGA-D6-A6EN-01 7 142562010 142562010 G A EPHB6 Missense_Mutation p.R151H 0.27 deleterious(0.04) benign(0.009) TCGA-D6-A6EN-01 7 17833690 17833690 C T SNX13 Silent p.A951A 0.21 TCGA-D6-A6EN-01 7 39500196 39500196 C T POU6F2 Nonsense_Mutation p.R485* 0.26 TCGA-D6-A6EN-01 7 94057708 94057708 C A COL1A2 Missense_Mutation p.N1210K 0.34 unknown(0) TCGA-D6-A6EN-01 8 30695298 30695298 C T TEX15 Silent p.K2451K 0.20 TCGA-D6-A6EN-01 8 66992739 66992739 C T DNAJC5B Missense_Mutation p.S154F 0.32 deleterious(0.01) benign(0.178) TCGA-D6-A6EN-01 8 71570088 71570088 G A LACTB2 Missense_Mutation p.R106W 0.50 deleterious(0) benign(0.077) TCGA-D6-A6EN-01 8 95504027 95504027 C T KIAA1429 Missense_Mutation p.R1640H 0.17 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EN-01 9 100328229 100328229 G A TMOD1 Missense_Mutation p.V240M 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-D6-A6EN-01 9 104499889 104499889 G A GRIN3A Missense_Mutation p.R125W 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D6-A6EN-01 9 130941637 130941637 C T CIZ1 Silent p.P283P 0.21 TCGA-D6-A6EN-01 9 139413161 139413161 C G NOTCH1 Missense_Mutation p.W327C 0.77 deleterious(0) probably_damaging(1) TCGA-D6-A6EN-01 9 21971199 21971200 - AT CDKN2A Frame_Shift_Ins p.M53Ifs*2 0.29 TCGA-D6-A6EN-01 9 32631389 32631389 G A TAF1L Missense_Mutation p.R1397C 0.38 deleterious(0) possibly_damaging(0.727) TCGA-D6-A6EN-01 9 37974673 37974673 C T SHB Missense_Mutation p.D334N 0.28 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EN-01 9 72131431 72131431 G A APBA1 Silent p.G232G 0.22 TCGA-D6-A6EN-01 9 79318958 79318958 G T PRUNE2 Missense_Mutation p.P2524H 0.11 deleterious(0.02) possibly_damaging(0.907) TCGA-D6-A6EN-01 9 95526892 95526892 C T BICD2 Silent p.E45E 0.29 TCGA-D6-A6EN-01 X 105277537 105277537 C A SERPINA7 Missense_Mutation p.R401M 0.49 deleterious(0.02) probably_damaging(0.941) TCGA-D6-A6EN-01 X 125299869 125299869 C A DCAF12L2 Silent p.A13A 0.22 TCGA-D6-A6EN-01 X 144904872 144904872 G A SLITRK2 Missense_Mutation p.R310H 0.49 deleterious(0.01) probably_damaging(0.991) TCGA-D6-A6EN-01 X 20190989 20190989 G A RPS6KA3 Nonsense_Mutation p.Q410* 0.62 TCGA-D6-A6EN-01 X 73963134 73963134 G T KIAA2022 Missense_Mutation p.Q420K 0.51 tolerated(0.2) benign(0.024) TCGA-D6-A6EN-01 X 86880613 86880613 C A KLHL4 Missense_Mutation p.L381M 0.50 deleterious(0) probably_damaging(0.972) TCGA-D6-A6EO-01 10 55582405 55582405 G A PCDH15 Missense_Mutation p.A1696V 0.24 tolerated_low_confidence(0.11) benign(0.011) TCGA-D6-A6EO-01 11 116746969 116746969 C T SIK3 Silent p.Q307Q 0.34 TCGA-D6-A6EO-01 11 117038340 117038340 C T PAFAH1B2 Silent p.I205I 0.17 TCGA-D6-A6EO-01 11 117117602 117117602 G A RNF214 Silent p.E299E 0.33 TCGA-D6-A6EO-01 11 124624558 124624558 C T ESAM Missense_Mutation p.V237M 0.36 tolerated(0.06) possibly_damaging(0.457) TCGA-D6-A6EO-01 11 47753078 47753078 G T FNBP4 Nonsense_Mutation p.S619* 0.33 TCGA-D6-A6EO-01 11 51515885 51515885 G T OR4C46 Nonsense_Mutation p.G202* 0.39 TCGA-D6-A6EO-01 11 55798044 55798044 T A OR5AS1 Missense_Mutation p.N50K 0.29 tolerated(0.63) benign(0.002) TCGA-D6-A6EO-01 11 57946938 57946938 T G OR9Q1 Missense_Mutation p.L8V 0.33 tolerated(0.85) benign(0.003) TCGA-D6-A6EO-01 11 60075714 60075714 T G MS4A4A 3'UTR 0.40 TCGA-D6-A6EO-01 11 6220873 6220873 G T OR52W1 Silent p.L140L 0.41 TCGA-D6-A6EO-01 11 6520037 6520037 G A DNHD1 Missense_Mutation p.G198S 0.38 probably_damaging(1) TCGA-D6-A6EO-01 12 113629679 113629679 G A RITA1 3'UTR 0.33 TCGA-D6-A6EO-01 12 120784110 120784110 G A MSI1 Missense_Mutation p.T292M 0.33 tolerated(0.09) benign(0.134) TCGA-D6-A6EO-01 12 30881830 30881830 G A CAPRIN2 Missense_Mutation p.P512S 0.40 tolerated_low_confidence(0.13) benign(0.009) TCGA-D6-A6EO-01 12 32903678 32903678 G C YARS2 Missense_Mutation p.R360G 0.30 deleterious(0.04) benign(0.009) TCGA-D6-A6EO-01 12 40734100 40734100 C G LRRK2 Missense_Mutation p.L1985V 0.35 deleterious(0) possibly_damaging(0.84) TCGA-D6-A6EO-01 12 53447278 53447278 C T TENC1 Intron 0.40 TCGA-D6-A6EO-01 12 7046137 7046137 T A ATN1 Silent p.S569S 0.27 TCGA-D6-A6EO-01 12 93100523 93100523 G A C12orf74 Missense_Mutation p.R39Q 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-D6-A6EO-01 13 114748610 114748610 G A RASA3 3'UTR 0.67 TCGA-D6-A6EO-01 14 21991048 21991048 C T SALL2 Silent p.P938P 0.31 TCGA-D6-A6EO-01 14 31849768 31849768 G C HEATR5A Missense_Mutation p.A245G 0.43 deleterious(0.02) probably_damaging(0.958) TCGA-D6-A6EO-01 14 76525594 76525594 C T IFT43 Intron 0.44 TCGA-D6-A6EO-01 14 78365440 78365440 C A ADCK1 Intron 0.38 TCGA-D6-A6EO-01 16 20693611 20693611 C T ACSM1 Missense_Mutation p.R193H 0.24 deleterious(0.05) benign(0.04) TCGA-D6-A6EO-01 16 30744978 30744978 C T SRCAP Missense_Mutation p.T2118I 0.38 probably_damaging(0.93) TCGA-D6-A6EO-01 16 30998261 30998261 G A HSD3B7 Missense_Mutation p.R211H 0.42 deleterious(0.01) possibly_damaging(0.829) TCGA-D6-A6EO-01 16 3140535 3140535 C T ZSCAN10 Silent p.P245P 0.32 TCGA-D6-A6EO-01 16 745961 745961 A G FBXL16 Intron 0.35 TCGA-D6-A6EO-01 16 84228031 84228031 C A ADAD2 Intron 0.35 TCGA-D6-A6EO-01 17 11835376 11835376 C T DNAH9 Missense_Mutation p.L4051F 0.33 probably_damaging(0.977) TCGA-D6-A6EO-01 17 27825376 27825376 G A TAOK1 Missense_Mutation p.S347N 0.25 deleterious(0) possibly_damaging(0.808) TCGA-D6-A6EO-01 17 7476054 7476054 C T SENP3 3'Flank 0.31 TCGA-D6-A6EO-01 17 7578262 7578277 CGGATAAGATGCTGAG - TP53 Frame_Shift_Del p.P191Qfs*51 0.64 TCGA-D6-A6EO-01 18 2718395 2718395 A G SMCHD1 Silent p.R807R 0.08 TCGA-D6-A6EO-01 19 12821510 12821510 G A TNPO2 Missense_Mutation p.L399F 0.34 deleterious(0) possibly_damaging(0.576) TCGA-D6-A6EO-01 19 1775232 1775232 C T ONECUT3 Nonsense_Mutation p.Q425* 0.35 TCGA-D6-A6EO-01 19 19330002 19330002 C A NCAN Silent p.R118R 0.35 TCGA-D6-A6EO-01 19 21608813 21608813 A C ZNF493 3'UTR 0.31 TCGA-D6-A6EO-01 19 23299917 23299917 G A ZNF730 5'UTR 0.40 TCGA-D6-A6EO-01 19 42510913 42510913 C T GRIK5 Missense_Mutation p.A641T 0.31 deleterious(0.02) probably_damaging(1) TCGA-D6-A6EO-01 19 51771937 51771937 C T SIGLECL1 3'UTR 0.31 TCGA-D6-A6EO-01 19 53644901 53644901 T A ZNF347 Missense_Mutation p.T395S 0.45 deleterious(0.03) benign(0.039) TCGA-D6-A6EO-01 19 54544211 54544211 C G VSTM1 3'UTR 0.64 TCGA-D6-A6EO-01 19 55222088 55222088 T A AC098784.2 3'Flank 0.46 TCGA-D6-A6EO-01 1 100598491 100598491 C T SASS6 5'UTR 0.21 TCGA-D6-A6EO-01 1 1019364 1019364 G A C1orf159 Intron 0.33 TCGA-D6-A6EO-01 1 176734863 176734863 G A PAPPA2 Missense_Mutation p.D1405N 0.33 tolerated(0.17) benign(0.357) TCGA-D6-A6EO-01 1 209933614 209933614 G A TRAF3IP3 Missense_Mutation p.G77D 0.07 tolerated(0.24) benign(0.028) TCGA-D6-A6EO-01 1 31454214 31454214 C G PUM1 Missense_Mutation p.L399F 0.38 tolerated_low_confidence(0.11) benign(0.043) TCGA-D6-A6EO-01 1 41220080 41220080 A T NFYC Intron 0.25 TCGA-D6-A6EO-01 1 42047649 42047649 C A HIVEP3 Missense_Mutation p.L940F 0.06 possibly_damaging(0.851) TCGA-D6-A6EO-01 1 52698894 52698894 C G ZFYVE9 Missense_Mutation p.Q6E 0.39 tolerated_low_confidence(0.05) probably_damaging(0.983) TCGA-D6-A6EO-01 1 55307479 55307479 G A C1orf177 Missense_Mutation p.R397K 0.38 deleterious(0.02) possibly_damaging(0.755) TCGA-D6-A6EO-01 1 67792498 67792498 C T IL12RB2 Nonsense_Mutation p.R149* 0.23 TCGA-D6-A6EO-01 1 77509973 77509973 C A ST6GALNAC5 Missense_Mutation p.Q116K 0.48 benign(0.11) TCGA-D6-A6EO-01 1 79120767 79120767 G A IFI44 Missense_Mutation p.R188Q 0.36 deleterious(0.02) possibly_damaging(0.554) TCGA-D6-A6EO-01 1 79392614 79392614 A G ELTD1 Missense_Mutation p.L347S 0.30 deleterious(0.05) benign(0.099) TCGA-D6-A6EO-01 20 23345049 23345049 C T GZF1 Missense_Mutation p.S10F 0.34 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EO-01 20 3845164 3845164 C T MAVS Missense_Mutation p.S296F 0.36 deleterious(0) possibly_damaging(0.826) TCGA-D6-A6EO-01 20 7894877 7894877 T C HAO1 Missense_Mutation p.D160G 0.24 deleterious(0) probably_damaging(1) TCGA-D6-A6EO-01 21 19666724 19666724 T C TMPRSS15 Silent p.P783P 0.34 TCGA-D6-A6EO-01 22 46931804 46931804 C T CELSR1 Missense_Mutation p.E422K 0.44 tolerated(0.64) benign(0.053) TCGA-D6-A6EO-01 2 152107874 152107874 C T RBM43 Missense_Mutation p.R207K 0.36 tolerated(0.82) benign(0.407) TCGA-D6-A6EO-01 2 1652648 1652648 G A PXDN Silent p.I968I 0.18 TCGA-D6-A6EO-01 2 168099555 168099555 C A XIRP2 Missense_Mutation p.D551E 0.39 benign(0.149) TCGA-D6-A6EO-01 2 1926541 1926541 A C MYT1L Missense_Mutation p.C334G 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D6-A6EO-01 2 79384769 79384769 T C REG3A Missense_Mutation p.Y130C 0.28 deleterious(0) probably_damaging(0.997) TCGA-D6-A6EO-01 2 85066403 85066403 G A TRABD2A Silent p.I238I 0.35 TCGA-D6-A6EO-01 2 97279275 97279275 G C KANSL3 Missense_Mutation p.L249V 0.33 deleterious(0.01) possibly_damaging(0.832) TCGA-D6-A6EO-01 3 102171763 102171763 C A ZPLD1 Missense_Mutation p.A52D 0.64 tolerated(0.37) benign(0.025) TCGA-D6-A6EO-01 3 107447670 107447670 A G BBX Missense_Mutation p.K155R 0.39 deleterious(0) probably_damaging(0.967) TCGA-D6-A6EO-01 3 119156860 119156860 C T TMEM39A Silent p.E222E 0.35 TCGA-D6-A6EO-01 3 126180392 126180392 C T ZXDC Missense_Mutation p.G705S 0.31 tolerated(0.17) benign(0.038) TCGA-D6-A6EO-01 3 133698375 133698375 G A SLCO2A1 Missense_Mutation p.R62C 0.08 deleterious(0) probably_damaging(0.997) TCGA-D6-A6EO-01 3 56468653 56468653 G C ERC2 Missense_Mutation p.S128C 0.52 deleterious(0.02) possibly_damaging(0.765) TCGA-D6-A6EO-01 4 114436283 114436283 G C CAMK2D Missense_Mutation p.T254S 0.18 deleterious_low_confidence(0.02) benign(0.375) TCGA-D6-A6EO-01 4 158281241 158281241 G T GRIA2 Missense_Mutation p.G746V 0.32 deleterious(0) probably_damaging(0.991) TCGA-D6-A6EO-01 4 16590360 16590360 T C LDB2 Silent p.L168L 0.53 TCGA-D6-A6EO-01 4 184166648 184166648 A G WWC2 Missense_Mutation p.I228V 0.41 deleterious(0) probably_damaging(0.99) TCGA-D6-A6EO-01 4 74014589 74014589 G A ANKRD17 Missense_Mutation p.P503L 0.33 probably_damaging(1) TCGA-D6-A6EO-01 4 95174149 95174149 G C SMARCAD1 Missense_Mutation p.W424C 0.78 deleterious(0) probably_damaging(0.951) TCGA-D6-A6EO-01 4 99313207 99313207 G T RAP1GDS1 Missense_Mutation p.A206S 0.25 deleterious(0.03) benign(0.316) TCGA-D6-A6EO-01 5 176710861 176710861 A - NSD1 Frame_Shift_Del p.T2029Hfs*6 0.39 TCGA-D6-A6EO-01 5 40854448 40854448 C G CARD6 Missense_Mutation p.S1005C 0.19 deleterious(0.01) possibly_damaging(0.87) TCGA-D6-A6EO-01 5 70786870 70786870 C G BDP1 Missense_Mutation p.L518V 0.37 tolerated(0.33) probably_damaging(0.972) TCGA-D6-A6EO-01 6 133014187 133014187 G A VNN1 Missense_Mutation p.H268Y 0.32 deleterious(0) probably_damaging(0.976) TCGA-D6-A6EO-01 6 152163816 152163816 C A ESR1 Silent p.A179A 0.18 TCGA-D6-A6EO-01 6 160671714 160671714 A G SLC22A2 Missense_Mutation p.L180P 0.29 deleterious(0) probably_damaging(0.987) TCGA-D6-A6EO-01 6 29429615 29429615 G A OR2H1 Silent p.R23R 0.31 TCGA-D6-A6EO-01 6 30681696 30681696 T A MDC1 Missense_Mutation p.D134V 0.25 deleterious(0.01) possibly_damaging(0.511) TCGA-D6-A6EO-01 6 44387238 44387238 G T CDC5L Missense_Mutation p.G382V 0.27 deleterious(0) probably_damaging(0.985) TCGA-D6-A6EO-01 6 64423032 64423032 A T PHF3 Missense_Mutation p.N1850Y 0.37 deleterious(0) probably_damaging(0.914) TCGA-D6-A6EO-01 7 107234468 107234468 G A BCAP29 Missense_Mutation p.D88N 0.69 tolerated(0.65) benign(0.002) TCGA-D6-A6EO-01 7 117407215 117407215 A G CTTNBP2 Silent p.L932L 0.64 TCGA-D6-A6EO-01 7 121679547 121679547 G C PTPRZ1 Missense_Mutation p.E1848Q 0.45 tolerated(0.06) benign(0.029) TCGA-D6-A6EO-01 7 150324890 150324890 C G GIMAP6 Missense_Mutation p.E266Q 0.52 tolerated(0.46) benign(0.037) TCGA-D6-A6EO-01 7 150325213 150325213 G T GIMAP6 Missense_Mutation p.T158N 0.53 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EO-01 7 38288848 38288848 C G TRGC2 Missense_Mutation p.K109N 0.46 tolerated(0.73) benign(0.008) TCGA-D6-A6EO-01 7 94989436 94989436 C T PON3 Missense_Mutation p.R305H 0.17 deleterious(0.02) benign(0.078) TCGA-D6-A6EO-01 8 103842123 103842123 T C AZIN1 Missense_Mutation p.M316V 0.26 tolerated(0.9) benign(0.071) TCGA-D6-A6EO-01 8 11995582 11995582 C A USP17L2 Missense_Mutation p.A230S 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-D6-A6EO-01 8 124382228 124382228 T A ATAD2 Missense_Mutation p.D255V 0.57 tolerated(0.46) benign(0.203) TCGA-D6-A6EO-01 8 142517313 142517313 G A MROH5 5'UTR 0.23 TCGA-D6-A6EO-01 8 143603386 143603386 G A BAI1 Missense_Mutation p.V1029M 0.30 deleterious(0) possibly_damaging(0.86) TCGA-D6-A6EO-01 9 133987042 133987042 C G AIF1L Missense_Mutation p.A77G 0.05 tolerated(0.07) benign(0.017) TCGA-D6-A6EO-01 9 90113996 90113996 A G DAPK1 Missense_Mutation p.T2A 0.38 deleterious_low_confidence(0) benign(0.035) TCGA-D6-A6EO-01 9 98224262 98224263 - A PTCH1 Frame_Shift_Ins p.D860Vfs*3 0.39 TCGA-D6-A6EP-01 10 102732979 102732979 G A SEMA4G Missense_Mutation p.R73Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EP-01 10 1065569 1065569 A T IDI2 Missense_Mutation p.V191D 0.70 deleterious(0.01) benign(0.403) TCGA-D6-A6EP-01 10 117486782 117486782 A T ATRNL1 Missense_Mutation p.M1274L 0.41 deleterious(0.02) benign(0.049) TCGA-D6-A6EP-01 10 122348922 122348922 C T PPAPDC1A Nonsense_Mutation p.R242* 0.19 TCGA-D6-A6EP-01 10 133769444 133769444 A G PPP2R2D Missense_Mutation p.I416V 0.52 tolerated(0.23) benign(0.022) TCGA-D6-A6EP-01 10 43596020 43596020 G A RET Missense_Mutation p.V63M 0.21 tolerated_low_confidence(0.05) benign(0.048) TCGA-D6-A6EP-01 10 43882522 43882522 T A HNRNPF Missense_Mutation p.M271L 0.28 tolerated(0.25) benign(0.006) TCGA-D6-A6EP-01 10 7621799 7621799 A T ITIH5 Missense_Mutation p.L446Q 0.34 deleterious(0) probably_damaging(0.994) TCGA-D6-A6EP-01 10 84733553 84733553 G A NRG3 Missense_Mutation p.V432M 0.36 tolerated(0.28) benign(0.028) TCGA-D6-A6EP-01 10 93579718 93579718 C T TNKS2 Missense_Mutation p.A219V 0.46 deleterious(0) probably_damaging(0.992) TCGA-D6-A6EP-01 10 97098980 97098980 C A SORBS1 Silent p.V925V 0.61 TCGA-D6-A6EP-01 10 99237134 99237134 T C MMS19 Missense_Mutation p.I155V 0.51 tolerated(0.19) benign(0.005) TCGA-D6-A6EP-01 11 101981896 101981896 G A YAP1 Missense_Mutation p.R106Q 0.18 deleterious(0) benign(0.245) TCGA-D6-A6EP-01 11 32635161 32635161 G T CCDC73 Nonsense_Mutation p.Y901* 0.89 TCGA-D6-A6EP-01 11 46784249 46784249 C A CKAP5 Missense_Mutation p.V1319F 0.14 deleterious(0) possibly_damaging(0.742) TCGA-D6-A6EP-01 11 5602834 5602834 C A OR52B6 Missense_Mutation p.A243E 0.88 deleterious(0) possibly_damaging(0.864) TCGA-D6-A6EP-01 11 60640752 60640752 G A ZP1 Silent p.R410R 0.14 TCGA-D6-A6EP-01 11 6129291 6129291 G T OR56B4 Missense_Mutation p.A95S 0.79 tolerated(0.63) benign(0.113) TCGA-D6-A6EP-01 11 62459908 62459908 C G BSCL2 Missense_Mutation p.S268T 0.28 tolerated(0.2) benign(0.202) TCGA-D6-A6EP-01 11 68312325 68312325 G T PPP6R3 Nonsense_Mutation p.E83* 0.68 TCGA-D6-A6EP-01 11 72114007 72114007 C T CLPB Intron 0.17 TCGA-D6-A6EP-01 11 95521688 95521688 A T FAM76B Missense_Mutation p.C43S 0.21 deleterious(0) benign(0.305) TCGA-D6-A6EP-01 13 103504604 103504604 G T BIVM-ERCC5 Silent p.V501V 0.33 TCGA-D6-A6EP-01 13 25457239 25457239 A T CENPJ 3'UTR 0.28 TCGA-D6-A6EP-01 13 25458472 25458472 C G CENPJ Missense_Mutation p.D1203H 0.21 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EP-01 14 103802403 103802403 G A EIF5 Missense_Mutation p.V35I 0.46 deleterious(0) benign(0.396) TCGA-D6-A6EP-01 14 23444314 23444314 C A AJUBA Splice_Site p.X414_splice 0.26 TCGA-D6-A6EP-01 14 31790778 31790778 A G HEATR5A Missense_Mutation p.V1299A 0.27 deleterious(0) benign(0.253) TCGA-D6-A6EP-01 14 34931415 34931415 C T SPTSSA 5'UTR 0.13 TCGA-D6-A6EP-01 14 38060648 38060648 C T FOXA1 Silent p.R447R 0.52 TCGA-D6-A6EP-01 14 38273972 38273972 C T TTC6 Silent p.L1373L 0.58 TCGA-D6-A6EP-01 14 60193673 60193673 C T RTN1 Missense_Mutation p.A577T 0.47 tolerated(0.29) benign(0.002) TCGA-D6-A6EP-01 14 63784523 63784523 A T GPHB5 RNA 0.35 TCGA-D6-A6EP-01 14 65260017 65260017 G C SPTB Missense_Mutation p.F788L 0.32 tolerated(0.56) benign(0.009) TCGA-D6-A6EP-01 15 27772766 27772766 G C GABRG3 Missense_Mutation p.K351N 0.50 tolerated(0.22) benign(0.004) TCGA-D6-A6EP-01 15 28326847 28326847 C A OCA2 Missense_Mutation p.Q58H 0.33 deleterious_low_confidence(0.02) benign(0.235) TCGA-D6-A6EP-01 15 45778867 45778867 A G SLC30A4 Silent p.D359D 0.38 TCGA-D6-A6EP-01 15 73562574 73562574 G A NEO1 Silent p.K906K 0.27 TCGA-D6-A6EP-01 15 95022321 95022321 T A MCTP2 3'UTR 0.33 TCGA-D6-A6EP-01 16 22155589 22155589 A C VWA3A Missense_Mutation p.K872Q 0.58 deleterious(0.01) possibly_damaging(0.771) TCGA-D6-A6EP-01 16 32266367 32266367 A G TP53TG3D 3'UTR 0.47 TCGA-D6-A6EP-01 16 57416310 57416310 G C CX3CL1 Missense_Mutation p.R187P 0.25 tolerated(0.08) benign(0.001) TCGA-D6-A6EP-01 16 624086 624086 G T PIGQ Missense_Mutation p.K4N 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D6-A6EP-01 16 70020388 70020388 G A PDXDC2P RNA 0.07 TCGA-D6-A6EP-01 16 72122887 72122887 C A TXNL4B Nonsense_Mutation p.G95* 0.63 TCGA-D6-A6EP-01 16 87525410 87525410 G A ZCCHC14 Silent p.F8F 0.66 TCGA-D6-A6EP-01 16 89349566 89349566 G A ANKRD11 Silent p.D1128D 0.72 TCGA-D6-A6EP-01 16 90032319 90032319 G A DEF8 Missense_Mutation p.S496N 0.37 tolerated(0.27) benign(0.02) TCGA-D6-A6EP-01 17 10428651 10428651 G T MYH2 Missense_Mutation p.L1518I 0.48 deleterious(0.02) benign(0.211) TCGA-D6-A6EP-01 17 42928626 42928626 C G EFTUD2 3'UTR 0.92 TCGA-D6-A6EP-01 17 48195666 48195666 C T SAMD14 Silent p.T23T 0.37 TCGA-D6-A6EP-01 17 56060120 56060120 G C VEZF1 Missense_Mutation p.S223C 0.91 deleterious(0) possibly_damaging(0.853) TCGA-D6-A6EP-01 17 73872555 73872555 G A TRIM47 Missense_Mutation p.R264W 0.20 deleterious(0) probably_damaging(0.999) TCGA-D6-A6EP-01 17 7578547 7578547 G - TP53 Frame_Shift_Del p.P128Lfs*42 0.52 TCGA-D6-A6EP-01 17 7752161 7752161 C T KDM6B Missense_Mutation p.S852L 0.94 possibly_damaging(0.504) TCGA-D6-A6EP-01 17 80828234 80828234 C G TBCD Missense_Mutation p.P485A 0.90 deleterious(0.04) possibly_damaging(0.899) TCGA-D6-A6EP-01 18 54385306 54385306 C G WDR7 Missense_Mutation p.Q564E 0.63 tolerated(0.49) possibly_damaging(0.478) TCGA-D6-A6EP-01 18 63526202 63526202 A T CDH7 Missense_Mutation p.I472L 0.56 deleterious(0.04) benign(0.1) TCGA-D6-A6EP-01 18 8824761 8824761 G C SOGA2 Missense_Mutation p.E1085Q 0.39 tolerated(0.06) possibly_damaging(0.877) TCGA-D6-A6EP-01 18 9256432 9256432 C T ANKRD12 Missense_Mutation p.S1056L 0.47 tolerated(0.3) benign(0.002) TCGA-D6-A6EP-01 19 1049416 1049416 G T ABCA7 Silent p.G844G 0.29 TCGA-D6-A6EP-01 19 15791302 15791302 C A CYP4F12 Silent p.I166I 0.61 TCGA-D6-A6EP-01 19 19014116 19014116 C T COPE Nonsense_Mutation p.W232* 0.26 TCGA-D6-A6EP-01 19 33666381 33666381 G A WDR88 Missense_Mutation p.R441Q 0.69 tolerated(0.06) benign(0.357) TCGA-D6-A6EP-01 19 42814891 42814891 G A PRR19 Silent p.%3D 0.24 TCGA-D6-A6EP-01 19 53793860 53793860 A G BIRC8 5'UTR 0.50 TCGA-D6-A6EP-01 19 55452898 55452898 G C NLRP7 Missense_Mutation p.T61S 0.37 tolerated(0.39) benign(0.065) TCGA-D6-A6EP-01 19 58238811 58238811 G A ZNF671 Missense_Mutation p.P29L 0.29 deleterious(0.02) possibly_damaging(0.726) TCGA-D6-A6EP-01 19 58864318 58864318 T A A1BG Nonsense_Mutation p.K106* 0.64 TCGA-D6-A6EP-01 19 7964334 7964334 C A LRRC8E Missense_Mutation p.F309L 0.41 tolerated(0.35) probably_damaging(0.952) TCGA-D6-A6EP-01 1 114640424 114640424 G A SYT6 Silent p.N395N 0.54 TCGA-D6-A6EP-01 1 115593159 115593159 G C TSPAN2 Missense_Mutation p.F206L 0.55 tolerated(0.18) benign(0.012) TCGA-D6-A6EP-01 1 118496120 118496120 G T WDR3 Missense_Mutation p.D742Y 0.18 deleterious(0.01) benign(0.398) TCGA-D6-A6EP-01 1 118629562 118629562 C G SPAG17 Missense_Mutation p.D477H 0.32 tolerated(0.4) benign(0.191) TCGA-D6-A6EP-01 1 12820955 12820955 A G C1orf158 3'UTR 0.25 TCGA-D6-A6EP-01 1 12954486 12954486 A G PRAMEF10 Missense_Mutation p.L266P 0.21 deleterious(0) probably_damaging(0.975) TCGA-D6-A6EP-01 1 152732795 152732795 C A KPRP Missense_Mutation p.T244N 0.34 tolerated(0.1) benign(0.369) TCGA-D6-A6EP-01 1 153931023 153931023 C T CRTC2 5'UTR 0.44 TCGA-D6-A6EP-01 1 172557963 172557963 G C SUCO Missense_Mutation p.E574D 0.53 tolerated(0.21) benign(0.021) TCGA-D6-A6EP-01 1 197390522 197390522 C A CRB1 Missense_Mutation p.L522I 0.19 tolerated(0.12) benign(0.219) TCGA-D6-A6EP-01 1 201334340 201334340 G A TNNT2 Silent p.L120L 0.15 TCGA-D6-A6EP-01 1 228505639 228505639 C T OBSCN Silent p.S5589S 0.31 TCGA-D6-A6EP-01 1 27190149 27190149 C T SFN Missense_Mutation p.S149L 0.29 tolerated_low_confidence(0.28) benign(0.023) TCGA-D6-A6EP-01 1 79126276 79126276 C T IFI44 Silent p.S350S 0.46 TCGA-D6-A6EP-01 1 9416329 9416329 G A SPSB1 Missense_Mutation p.V127I 0.54 tolerated(0.23) benign(0.228) TCGA-D6-A6EP-01 20 34262286 34262286 G T NFS1 Silent p.A374A 0.34 TCGA-D6-A6EP-01 20 3846449 3846449 C A MAVS Silent p.S426S 0.40 TCGA-D6-A6EP-01 20 48164423 48164423 T C PTGIS Missense_Mutation p.Q111R 0.43 tolerated(0.47) benign(0.005) TCGA-D6-A6EP-01 20 61458626 61458626 C T COL9A3 Missense_Mutation p.R276C 0.53 deleterious(0.05) unknown(0) TCGA-D6-A6EP-01 20 9546608 9546608 C G PAK7 Missense_Mutation p.G472R 0.20 deleterious(0.02) probably_damaging(1) TCGA-D6-A6EP-01 21 33949207 33949207 A C TCP10L Missense_Mutation p.I175M 0.89 tolerated(0.2) probably_damaging(0.931) TCGA-D6-A6EP-01 22 24224735 24224735 C T SLC2A11 Missense_Mutation p.R266W 0.38 deleterious(0.03) benign(0.025) TCGA-D6-A6EP-01 22 30688333 30688334 - A TBC1D10A 3'UTR 0.37 TCGA-D6-A6EP-01 22 41077549 41077549 G A MCHR1 Missense_Mutation p.A296T 0.70 tolerated(0.26) probably_damaging(0.999) TCGA-D6-A6EP-01 22 43010899 43010899 C A POLDIP3 5'UTR 0.53 TCGA-D6-A6EP-01 22 43010900 43010900 C T POLDIP3 5'UTR 0.54 TCGA-D6-A6EP-01 22 46774557 46774557 C A CELSR1 Silent p.R2438R 0.32 TCGA-D6-A6EP-01 2 135738628 135738628 T C MAP3K19 Missense_Mutation p.H1228R 0.90 tolerated(0.09) benign(0.12) TCGA-D6-A6EP-01 2 144314011 144314011 C A ARHGAP15 Silent p.G320G 0.90 TCGA-D6-A6EP-01 2 213878616 213878616 T A IKZF2 Missense_Mutation p.D252V 0.87 tolerated(0.11) possibly_damaging(0.851) TCGA-D6-A6EP-01 2 215976396 215976396 C G ABCA12 Missense_Mutation p.L29F 0.93 deleterious(0.02) possibly_damaging(0.642) TCGA-D6-A6EP-01 2 219942055 219942055 C A NHEJ1 Silent p.L246L 0.28 TCGA-D6-A6EP-01 2 220082999 220082999 G T ABCB6 Silent p.R133R 0.55 TCGA-D6-A6EP-01 2 230723591 230723591 G C TRIP12 Missense_Mutation p.F266L 0.95 tolerated_low_confidence(0.12) benign(0.031) TCGA-D6-A6EP-01 2 71060790 71060790 C A CD207 Missense_Mutation p.L184F 0.67 tolerated(0.22) benign(0.42) TCGA-D6-A6EP-01 3 112198587 112198587 T C BTLA Missense_Mutation p.I40V 0.53 tolerated(0.58) benign(0.02) TCGA-D6-A6EP-01 3 147108779 147108779 G T ZIC4 Missense_Mutation p.H365N 0.12 tolerated_low_confidence(0.16) benign(0.015) TCGA-D6-A6EP-01 3 151011903 151011903 A C GPR87 3'UTR 0.54 TCGA-D6-A6EP-01 3 171405194 171405194 C G PLD1 Missense_Mutation p.A574P 0.14 tolerated(0.08) benign(0.346) TCGA-D6-A6EP-01 3 179576864 179576864 T A PEX5L Nonsense_Mutation p.K270* 0.19 TCGA-D6-A6EP-01 3 194061797 194061797 G T CPN2 Silent p.P545P 0.15 TCGA-D6-A6EP-01 3 196545014 196545014 A T PAK2 Silent p.G380G 0.58 TCGA-D6-A6EP-01 3 99566999 99566999 A G FILIP1L Intron 0.47 TCGA-D6-A6EP-01 4 56315583 56315583 T C CLOCK Missense_Mutation p.R477G 0.59 tolerated(0.34) possibly_damaging(0.764) TCGA-D6-A6EP-01 5 169507197 169507197 A T DOCK2 Missense_Mutation p.T1733S 0.89 tolerated_low_confidence(0.19) possibly_damaging(0.872) TCGA-D6-A6EP-01 5 39364512 39364512 G T C9 Missense_Mutation p.L19I 0.21 tolerated(0.06) benign(0.048) TCGA-D6-A6EP-01 5 39364513 39364513 G T C9 Silent p.I18I 0.20 TCGA-D6-A6EP-01 5 42718763 42718763 G A GHR Missense_Mutation p.G385E 0.26 deleterious(0) probably_damaging(1) TCGA-D6-A6EP-01 6 10415052 10415052 T A TFAP2A Intron 0.44 TCGA-D6-A6EP-01 6 146350600 146350600 G C GRM1 5'UTR 0.30 TCGA-D6-A6EP-01 6 151152226 151152226 T A PLEKHG1 Missense_Mutation p.V660D 0.53 deleterious(0) probably_damaging(0.974) TCGA-D6-A6EP-01 6 152621877 152621877 T C SYNE1 Missense_Mutation p.T5861A 0.52 possibly_damaging(0.725) TCGA-D6-A6EP-01 6 25515919 25515919 C T LRRC16A Missense_Mutation p.S550F 0.32 deleterious(0) probably_damaging(0.982) TCGA-D6-A6EP-01 6 27925464 27925464 G C OR2B6 Missense_Mutation p.W149S 0.35 deleterious(0) probably_damaging(1) TCGA-D6-A6EP-01 6 28121865 28121865 A C ZKSCAN8 3'UTR 0.12 TCGA-D6-A6EP-01 6 31683300 31683300 A G LY6G6F 3'Flank 0.51 TCGA-D6-A6EP-01 6 34214862 34214862 C T C6orf1 Missense_Mutation p.M28I 0.47 tolerated_low_confidence(0.11) benign(0.065) TCGA-D6-A6EP-01 6 7727426 7727426 C A BMP6 Missense_Mutation p.Q80K 0.23 deleterious(0) probably_damaging(0.992) TCGA-D6-A6EP-01 6 7727427 7727427 A G BMP6 Missense_Mutation p.Q80R 0.23 deleterious(0) probably_damaging(0.995) TCGA-D6-A6EP-01 6 87968364 87968364 G A ZNF292 Missense_Mutation p.V1673I 0.10 tolerated_low_confidence(0.51) benign(0.001) TCGA-D6-A6EP-01 7 129311379 129311379 C A NRF1 Missense_Mutation p.L112I 0.75 deleterious(0.02) benign(0.432) TCGA-D6-A6EP-01 7 141464960 141464960 G T TAS2R3 3'UTR 0.21 TCGA-D6-A6EP-01 7 150554015 150554015 C A AOC1 Missense_Mutation p.H153N 0.22 tolerated(0.53) benign(0.005) TCGA-D6-A6EP-01 7 2962292 2962292 G T CARD11 Missense_Mutation p.L749M 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-D6-A6EP-01 7 32623534 32623534 G A AVL9 3'UTR 0.41 TCGA-D6-A6EP-01 7 34851447 34851447 C T NPSR1 Silent p.I150I 0.35 TCGA-D6-A6EP-01 7 34889371 34889371 C A NPSR1 Intron 0.57 TCGA-D6-A6EP-01 7 37951817 37951817 C T SFRP4 Missense_Mutation p.R232Q 0.24 tolerated(0.15) benign(0.035) TCGA-D6-A6EP-01 7 44578642 44578642 G C NPC1L1 Missense_Mutation p.R452G 0.59 deleterious(0.01) benign(0.406) TCGA-D6-A6EP-01 7 6730867 6730867 C T ZNF12 Missense_Mutation p.R569K 0.05 deleterious(0.04) probably_damaging(0.913) TCGA-D6-A6EP-01 7 69064895 69064895 G C AUTS2 Missense_Mutation p.D86H 0.21 deleterious(0) probably_damaging(0.996) TCGA-D6-A6EP-01 7 72419408 72419408 C T POM121 3'UTR 0.09 TCGA-D6-A6EP-01 7 7413146 7413146 T C COL28A1 Silent p.L797L 0.35 TCGA-D6-A6EP-01 7 94740703 94740703 G T PPP1R9A Missense_Mutation p.D510Y 0.55 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EP-01 8 21938938 21938938 G T DMTN Missense_Mutation p.K394N 0.36 deleterious(0) probably_damaging(0.948) TCGA-D6-A6EP-01 8 72267113 72267113 G T EYA1 Missense_Mutation p.H10N 0.38 deleterious_low_confidence(0.02) benign(0.003) TCGA-D6-A6EP-01 8 87588063 87588063 G A CNGB3 Missense_Mutation p.T800I 0.51 deleterious(0) possibly_damaging(0.642) TCGA-D6-A6EP-01 8 94747091 94747091 T C RBM12B Silent p.P516P 0.44 TCGA-D6-A6EP-01 9 101216286 101216286 C G GABBR2 Missense_Mutation p.E405Q 0.89 tolerated(0.13) benign(0.021) TCGA-D6-A6EP-01 9 140150814 140150814 C G NELFB Missense_Mutation p.S100R 0.44 deleterious(0.02) possibly_damaging(0.877) TCGA-D6-A6EP-01 9 4718523 4718523 C G AK3 Silent p.L153L 0.79 TCGA-D6-A6EP-01 9 80919820 80919820 A G PSAT1 Missense_Mutation p.I121V 0.89 tolerated(1) benign(0) TCGA-D6-A6EP-01 9 8499688 8499688 C T PTPRD Missense_Mutation p.G761S 0.21 tolerated(0.07) probably_damaging(0.998) TCGA-D6-A6EP-01 9 96418870 96418870 A C PHF2 Silent p.A380A 0.27 TCGA-D6-A6EP-01 X 123780597 123780597 T G TENM1 Missense_Mutation p.H548P 0.90 deleterious(0) possibly_damaging(0.658) TCGA-D6-A6EP-01 X 151896316 151896316 G A MAGEA12 3'Flank 0.84 TCGA-D6-A6EP-01 X 1719886 1719886 C G AKAP17A Missense_Mutation p.P496R 0.37 tolerated_low_confidence(0.16) unknown(0) TCGA-D6-A6EP-01 X 18221819 18221819 T C BEND2 Missense_Mutation p.I237V 0.92 tolerated(0.5) benign(0.007) TCGA-D6-A6EP-01 X 32834617 32834617 G A DMD Silent p.G166G 0.50 TCGA-D6-A6EQ-01 10 129906835 129906835 C G MKI67 Missense_Mutation p.R1090T 0.19 tolerated(0.08) possibly_damaging(0.615) TCGA-D6-A6EQ-01 10 49667777 49667777 C T ARHGAP22 Silent p.V219V 0.33 TCGA-D6-A6EQ-01 10 61414210 61414210 G A SLC16A9 Nonsense_Mutation p.Q192* 0.18 TCGA-D6-A6EQ-01 10 62647983 62647983 C T RHOBTB1 Silent p.K481K 0.07 TCGA-D6-A6EQ-01 10 71902510 71902510 G A TYSND1 Missense_Mutation p.T466M 0.10 tolerated(0.1) benign(0.052) TCGA-D6-A6EQ-01 10 79581668 79581668 T A DLG5 Silent p.P858P 0.34 TCGA-D6-A6EQ-01 10 88728278 88728278 C A ADIRF 5'UTR 0.37 TCGA-D6-A6EQ-01 10 88768568 88768568 G C RP11-96C23.10 3'Flank 0.35 TCGA-D6-A6EQ-01 10 96796914 96796914 A G CYP2C8 Missense_Mutation p.S482P 0.05 tolerated(0.96) benign(0.001) TCGA-D6-A6EQ-01 11 1016697 1016697 G A MUC6 Missense_Mutation p.S2035F 0.09 benign(0.316) TCGA-D6-A6EQ-01 11 123813778 123813778 G A OR6T1 Silent p.I256I 0.32 TCGA-D6-A6EQ-01 11 129739790 129739790 C T NFRKB Missense_Mutation p.V1069M 0.23 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-D6-A6EQ-01 11 14277196 14277196 C T SPON1 RNA 0.20 TCGA-D6-A6EQ-01 11 62415004 62415004 G A INTS5 Missense_Mutation p.R850C 0.27 tolerated(0.13) benign(0.003) TCGA-D6-A6EQ-01 12 12397432 12397432 G T LRP6 Missense_Mutation p.S71R 0.06 tolerated(0.14) probably_damaging(0.987) TCGA-D6-A6EQ-01 12 14634098 14634098 C G ATF7IP Missense_Mutation p.R1087G 0.15 deleterious_low_confidence(0) unknown(0) TCGA-D6-A6EQ-01 12 43833789 43833789 T C ADAMTS20 Missense_Mutation p.T792A 0.40 tolerated(0.8) benign(0.033) TCGA-D6-A6EQ-01 12 46245684 46245684 G T ARID2 Nonsense_Mutation p.E1260* 0.27 TCGA-D6-A6EQ-01 12 6559495 6559495 C A CD27 Missense_Mutation p.P142H 0.27 deleterious(0) probably_damaging(0.982) TCGA-D6-A6EQ-01 12 78582051 78582051 G A NAV3 Silent p.L1916L 0.24 TCGA-D6-A6EQ-01 12 81732999 81732999 A G PPFIA2 Silent p.R836R 0.22 TCGA-D6-A6EQ-01 13 78493765 78493765 C T EDNRB 5'UTR 0.23 TCGA-D6-A6EQ-01 14 107131463 107131463 A C IGHV3-66 Missense_Mutation p.W7G 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.672) TCGA-D6-A6EQ-01 14 62551060 62551060 C A SYT16 Silent p.I527I 0.32 TCGA-D6-A6EQ-01 14 92474060 92474060 T C TRIP11 Missense_Mutation p.N484S 0.32 tolerated(0.13) benign(0.02) TCGA-D6-A6EQ-01 15 23300139 23300139 G C HERC2P2 RNA 0.18 TCGA-D6-A6EQ-01 15 49620364 49620364 T A GALK2 3'UTR 0.28 TCGA-D6-A6EQ-01 15 74003500 74003500 A - CD276 Frame_Shift_Del p.D524Afs*10 0.09 TCGA-D6-A6EQ-01 16 48174625 48174625 C T ABCC12 Silent p.K210K 0.29 TCGA-D6-A6EQ-01 16 57559864 57559864 G C CCDC102A Missense_Mutation p.A254G 0.24 deleterious(0) possibly_damaging(0.873) TCGA-D6-A6EQ-01 16 72110962 72110962 G T HPR Missense_Mutation p.K343N 0.13 tolerated(0.17) benign(0.002) TCGA-D6-A6EQ-01 17 26671444 26671444 G A TNFAIP1 Missense_Mutation p.E257K 0.31 deleterious(0) possibly_damaging(0.481) TCGA-D6-A6EQ-01 17 30179888 30179888 C A COPRS Missense_Mutation p.D110Y 0.24 deleterious(0.01) possibly_damaging(0.908) TCGA-D6-A6EQ-01 17 35604999 35604999 C T ACACA Missense_Mutation p.G749S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-D6-A6EQ-01 17 39394318 39394318 T C KRTAP9-8 Silent p.C5C 0.09 TCGA-D6-A6EQ-01 17 39405951 39405951 C T KRTAP9-4 5'UTR 0.23 TCGA-D6-A6EQ-01 17 39974425 39974425 G A FKBP10 Missense_Mutation p.S159N 0.17 tolerated(0.35) benign(0.001) TCGA-D6-A6EQ-01 17 39977976 39977976 C A FKBP10 Silent p.P490P 0.24 TCGA-D6-A6EQ-01 17 42992568 42992568 G A GFAP Missense_Mutation p.A96V 0.16 tolerated(0.65) benign(0.006) TCGA-D6-A6EQ-01 17 46670537 46670537 C T HOXB5 Missense_Mutation p.E170K 0.26 tolerated(0.13) benign(0.114) TCGA-D6-A6EQ-01 17 47886546 47886546 C T KAT7 Silent p.N243N 0.26 TCGA-D6-A6EQ-01 17 6704223 6704223 C T TEKT1 Missense_Mutation p.A298T 0.13 tolerated(0.29) benign(0.005) TCGA-D6-A6EQ-01 17 74003394 74003407 GATCATCCCGGAGA - EVPL Frame_Shift_Del p.L1960Qfs*2 0.33 TCGA-D6-A6EQ-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.38 tolerated(0.09) benign(0.344) TCGA-D6-A6EQ-01 17 76449525 76449525 C T DNAH17 Missense_Mutation p.A3463T 0.08 probably_damaging(0.929) TCGA-D6-A6EQ-01 19 1231206 1231206 C T C19orf26 Missense_Mutation p.D350N 0.20 deleterious(0.03) possibly_damaging(0.615) TCGA-D6-A6EQ-01 19 17716877 17716877 C T UNC13A Missense_Mutation p.A1700T 0.65 tolerated_low_confidence(0.34) benign(0) TCGA-D6-A6EQ-01 19 33698459 33698459 A T LRP3 Missense_Mutation p.D764V 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D6-A6EQ-01 19 39957117 39957117 C A SUPT5H Intron 0.26 TCGA-D6-A6EQ-01 19 48517558 48517558 G C ELSPBP1 Missense_Mutation p.Q67H 0.10 tolerated(0.12) benign(0.326) TCGA-D6-A6EQ-01 1 110086714 110086714 T C GPR61 Missense_Mutation p.V357A 0.41 tolerated(1) benign(0) TCGA-D6-A6EQ-01 1 145522769 145522769 C T PEX11B Silent p.D210D 0.32 TCGA-D6-A6EQ-01 1 150483760 150483760 C G ECM1 Intron 0.27 TCGA-D6-A6EQ-01 1 158813850 158813850 G A MNDA Missense_Mutation p.V170M 0.31 tolerated(0.63) benign(0) TCGA-D6-A6EQ-01 1 180772700 180772700 G A XPR1 Missense_Mutation p.A134T 0.25 deleterious(0) probably_damaging(0.998) TCGA-D6-A6EQ-01 1 19652808 19652808 C A PQLC2 Missense_Mutation p.A151D 0.08 tolerated(0.61) benign(0.002) TCGA-D6-A6EQ-01 1 211966515 211966515 C T LPGAT1 Missense_Mutation p.D86N 0.10 deleterious(0.03) benign(0.335) TCGA-D6-A6EQ-01 1 228505307 228505307 G T OBSCN Missense_Mutation p.Q5525H 0.37 possibly_damaging(0.792) TCGA-D6-A6EQ-01 1 240601385 240601385 C G FMN2 Missense_Mutation p.F1645L 0.30 probably_damaging(0.939) TCGA-D6-A6EQ-01 1 247835454 247835454 C T OR13G1 Missense_Mutation p.G297E 0.29 deleterious(0.01) possibly_damaging(0.904) TCGA-D6-A6EQ-01 1 248308937 248308937 C T OR2M5 Missense_Mutation p.T163I 0.27 deleterious(0.04) benign(0.12) TCGA-D6-A6EQ-01 1 2491372 2491372 C T TNFRSF14 Missense_Mutation p.R139C 0.65 deleterious(0.01) possibly_damaging(0.75) TCGA-D6-A6EQ-01 1 47583530 47583530 G T CYP4Z1 Missense_Mutation p.R481M 0.27 deleterious(0.02) probably_damaging(0.951) TCGA-D6-A6EQ-01 1 54640384 54640384 C A CYB5RL Missense_Mutation p.A286S 0.28 deleterious(0.02) possibly_damaging(0.564) TCGA-D6-A6EQ-01 1 6530577 6530577 C - PLEKHG5 Frame_Shift_Del p.E636Kfs*6 0.32 TCGA-D6-A6EQ-01 1 77752791 77752791 C T AK5 Missense_Mutation p.R76W 0.28 deleterious(0) probably_damaging(0.987) TCGA-D6-A6EQ-01 20 20618015 20618015 G A RALGAPA2 Missense_Mutation p.P266L 0.17 deleterious(0) probably_damaging(0.992) TCGA-D6-A6EQ-01 20 23546710 23546710 A T CST9L Silent p.T85T 0.20 TCGA-D6-A6EQ-01 21 31812859 31812859 C T KRTAP15-1 Nonsense_Mutation p.Q72* 0.35 TCGA-D6-A6EQ-01 21 34011985 34011985 C T SYNJ1 Silent p.S1270S 0.17 TCGA-D6-A6EQ-01 21 44324289 44324289 C T NDUFV3 Silent p.H389H 0.21 TCGA-D6-A6EQ-01 22 22035601 22035601 C T PPIL2 Silent p.C103C 0.24 TCGA-D6-A6EQ-01 22 41169986 41169986 A G SLC25A17 Missense_Mutation p.L244S 0.17 tolerated(0.6) benign(0.444) TCGA-D6-A6EQ-01 2 179587386 179587386 C T TTN Missense_Mutation p.E7414K 0.32 TCGA-D6-A6EQ-01 2 50280430 50280430 C G NRXN1 Silent p.P1409P 0.27 TCGA-D6-A6EQ-01 2 51255079 51255079 G C NRXN1 Missense_Mutation p.D111E 0.33 deleterious(0) probably_damaging(1) TCGA-D6-A6EQ-01 2 87141032 87141032 G T RGPD1 5'Flank 0.33 TCGA-D6-A6EQ-01 2 89976490 89976490 C - IGKV2D-30 3'Flank 0.17 TCGA-D6-A6EQ-01 3 112301521 112301521 G A SLC35A5 Missense_Mutation p.G405R 0.31 deleterious(0) probably_damaging(0.997) TCGA-D6-A6EQ-01 3 129140502 129140502 T C EFCAB12 Missense_Mutation p.K65R 0.33 tolerated(0.25) benign(0.173) TCGA-D6-A6EQ-01 3 172674530 172674530 T A SPATA16 Missense_Mutation p.I340L 0.25 tolerated(0.08) benign(0.068) TCGA-D6-A6EQ-01 4 100266156 100266156 C T ADH1C Missense_Mutation p.V144I 0.24 benign(0.001) TCGA-D6-A6EQ-01 4 174292249 174292249 G A SAP30 5'UTR 0.20 TCGA-D6-A6EQ-01 4 72332273 72332273 G T SLC4A4 Missense_Mutation p.R537M 0.31 deleterious(0.04) probably_damaging(0.964) TCGA-D6-A6EQ-01 4 74735639 74735639 G A CXCL1 Missense_Mutation p.G81R 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-D6-A6EQ-01 4 81967536 81967536 T C BMP3 Missense_Mutation p.Y321H 0.13 deleterious(0) possibly_damaging(0.728) TCGA-D6-A6EQ-01 4 88578209 88578209 C T DMP1 Missense_Mutation p.S27F 0.18 deleterious(0) possibly_damaging(0.601) TCGA-D6-A6EQ-01 5 82875883 82875883 G A VCAN Missense_Mutation p.R3322K 0.47 deleterious(0) probably_damaging(1) TCGA-D6-A6EQ-01 5 94043231 94043231 T A MCTP1 Silent p.P990P 0.42 TCGA-D6-A6EQ-01 5 94043232 94043232 G T MCTP1 Missense_Mutation p.P990Q 0.43 deleterious(0.03) probably_damaging(0.974) TCGA-D6-A6EQ-01 6 132206202 132206202 C T ENPP1 Nonsense_Mutation p.Q815* 0.32 TCGA-D6-A6EQ-01 6 138657566 138657566 C T KIAA1244 Silent p.R2159R 0.44 TCGA-D6-A6EQ-01 6 144508519 144508519 C T STX11 Missense_Mutation p.T252M 0.11 deleterious(0) probably_damaging(0.978) TCGA-D6-A6EQ-01 6 167738645 167738645 C T TTLL2 5'UTR 0.64 TCGA-D6-A6EQ-01 6 17764436 17764436 C T KIF13A Missense_Mutation p.D1775N 0.28 tolerated_low_confidence(0.23) benign(0.014) TCGA-D6-A6EQ-01 6 20490660 20490660 G C E2F3 Nonstop_Mutation p.*466Sext*5 0.47 TCGA-D6-A6EQ-01 6 73834251 73834251 C T KCNQ5 Intron 0.21 TCGA-D6-A6EQ-01 7 148703001 148703001 C A PDIA4 Missense_Mutation p.D426Y 0.44 deleterious(0) probably_damaging(0.994) TCGA-D6-A6EQ-01 7 150557702 150557702 A T AOC1 Missense_Mutation p.N657I 0.26 deleterious(0) probably_damaging(0.968) TCGA-D6-A6EQ-01 7 156798412 156798412 C T MNX1 Silent p.P336P 0.11 TCGA-D6-A6EQ-01 7 21781651 21781651 C T DNAH11 Missense_Mutation p.S2681L 0.33 benign(0.012) TCGA-D6-A6EQ-01 7 89937127 89937127 G A C7orf63 Missense_Mutation p.E837K 0.31 tolerated(0.11) benign(0.1) TCGA-D6-A6EQ-01 7 96651526 96651526 C T DLX5 Missense_Mutation p.A171T 0.21 deleterious(0.01) benign(0.239) TCGA-D6-A6EQ-01 8 113662509 113662509 T C CSMD3 Missense_Mutation p.D1025G 0.50 deleterious(0.04) possibly_damaging(0.746) TCGA-D6-A6EQ-01 8 68864658 68864658 G A PREX2 Missense_Mutation p.R10H 0.59 deleterious_low_confidence(0.04) benign(0.132) TCGA-D6-A6EQ-01 8 73480018 73480018 A G KCNB2 Missense_Mutation p.T17A 0.50 tolerated(0.26) benign(0.023) TCGA-D6-A6EQ-01 8 87591012 87591012 C G CNGB3 Missense_Mutation p.E670Q 0.46 tolerated(0.61) benign(0.009) TCGA-D6-A6EQ-01 9 125486859 125486859 G A OR1L4 Silent p.Q197Q 0.11 TCGA-D6-A6EQ-01 9 130941438 130941438 A T CIZ1 Missense_Mutation p.S350T 0.39 tolerated_low_confidence(0.05) benign(0.276) TCGA-D6-A6EQ-01 9 130982551 130982551 C T DNM1 Silent p.L260L 0.46 TCGA-D6-A6EQ-01 9 136508639 136508639 C T DBH Silent p.C283C 0.21 TCGA-D6-A6EQ-01 9 33956091 33956091 G C UBAP2 Missense_Mutation p.I284M 0.09 deleterious(0.01) possibly_damaging(0.454) TCGA-D6-A6EQ-01 9 75775728 75775728 A G ANXA1 Missense_Mutation p.T132A 0.16 deleterious(0) probably_damaging(0.965) TCGA-D6-A6EQ-01 X 106418419 106418419 C A NUP62CL 5'UTR 0.54 TCGA-D6-A6EQ-01 X 128879212 128879212 G A XPNPEP2 Missense_Mutation p.A90T 0.46 tolerated(0.13) benign(0.014) TCGA-D6-A6EQ-01 X 129171430 129171430 C T BCORL1 Missense_Mutation p.S1465F 0.54 probably_damaging(0.979) TCGA-D6-A6EQ-01 X 129171431 129171431 C T BCORL1 Silent p.S1465S 0.54 TCGA-D6-A6ES-01 10 106602566 106602566 C T SORCS3 Missense_Mutation p.T215M 0.56 deleterious(0) probably_damaging(0.987) TCGA-D6-A6ES-01 10 12209713 12209713 G C NUDT5 Missense_Mutation p.F216L 0.30 tolerated_low_confidence(0.06) benign(0.084) TCGA-D6-A6ES-01 10 14867593 14867593 G A CDNF Silent p.D90D 0.34 TCGA-D6-A6ES-01 10 16882430 16882430 C G CUBN Missense_Mutation p.D3311H 0.26 deleterious(0.01) probably_damaging(0.93) TCGA-D6-A6ES-01 10 17113966 17113966 C T CUBN Missense_Mutation p.R769Q 0.23 tolerated(0.06) benign(0.126) TCGA-D6-A6ES-01 10 22618352 22618352 C T COMMD3-BMI1 Missense_Mutation p.H431Y 0.07 tolerated_low_confidence(0.05) possibly_damaging(0.843) TCGA-D6-A6ES-01 10 38242687 38242687 C T ZNF25 Splice_Site p.X80_splice 0.32 TCGA-D6-A6ES-01 10 89653781 89653781 G C PTEN Splice_Site p.X27_splice 0.52 TCGA-D6-A6ES-01 10 91371485 91371485 C T PANK1 Missense_Mutation p.G342R 0.58 deleterious(0) probably_damaging(1) TCGA-D6-A6ES-01 11 119003248 119003248 C T HINFP Missense_Mutation p.T240I 0.55 deleterious(0.01) probably_damaging(0.914) TCGA-D6-A6ES-01 11 124618415 124618415 C T VSIG2 Missense_Mutation p.R241Q 0.58 deleterious(0.05) possibly_damaging(0.905) TCGA-D6-A6ES-01 11 18631603 18631603 G C SPTY2D1 Intron 0.36 TCGA-D6-A6ES-01 11 55653650 55653650 C G TRIM51 Missense_Mutation p.L155V 0.08 tolerated(0.15) benign(0.006) TCGA-D6-A6ES-01 11 55872944 55872944 C T OR8H2 Silent p.L142L 0.33 TCGA-D6-A6ES-01 11 59344004 59344004 C T OSBP 3'UTR 0.30 TCGA-D6-A6ES-01 11 62529308 62529308 C A POLR2G Missense_Mutation p.F18L 0.31 deleterious(0) benign(0.127) TCGA-D6-A6ES-01 11 6414491 6414491 C T SMPD1 Silent p.L379L 0.48 TCGA-D6-A6ES-01 11 73688981 73688981 C T UCP2 Missense_Mutation p.R96H 0.56 deleterious(0) probably_damaging(0.999) TCGA-D6-A6ES-01 11 8704277 8704277 G T RPL27A 5'UTR 0.55 TCGA-D6-A6ES-01 11 94862036 94862036 C G ENDOD1 Missense_Mutation p.Q266E 0.47 tolerated(0.11) benign(0.257) TCGA-D6-A6ES-01 12 100200372 100200372 T - ANKS1B Frame_Shift_Del p.K160Sfs*18 0.28 TCGA-D6-A6ES-01 12 100813963 100813963 C G SLC17A8 3'UTR 0.44 TCGA-D6-A6ES-01 12 104373818 104373818 G A TDG Missense_Mutation p.D126N 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-D6-A6ES-01 12 115112612 115112612 G A TBX3 Silent p.D376D 0.27 TCGA-D6-A6ES-01 12 121613222 121613222 G C P2RX7 Missense_Mutation p.E305Q 0.35 deleterious(0.01) probably_damaging(0.971) TCGA-D6-A6ES-01 12 123342671 123342671 G A HIP1R Missense_Mutation p.R613Q 0.37 tolerated(1) benign(0) TCGA-D6-A6ES-01 12 14794080 14794080 G C GUCY2C Missense_Mutation p.I668M 0.23 deleterious(0) probably_damaging(0.983) TCGA-D6-A6ES-01 12 2983384 2983384 G A FOXM1 Silent p.I87I 0.33 TCGA-D6-A6ES-01 12 3805979 3805979 C A EFCAB4B Missense_Mutation p.D63Y 0.29 deleterious(0) probably_damaging(1) TCGA-D6-A6ES-01 12 39695412 39695412 T A KIF21A Missense_Mutation p.S1601C 0.33 deleterious(0) probably_damaging(0.996) TCGA-D6-A6ES-01 12 47629426 47629426 G A PCED1B Missense_Mutation p.V194I 0.32 tolerated(1) benign(0.008) TCGA-D6-A6ES-01 12 49444707 49444707 G C KMT2D Missense_Mutation p.S920C 0.36 unknown(0) TCGA-D6-A6ES-01 12 55421326 55421326 C G NEUROD4 3'UTR 0.28 TCGA-D6-A6ES-01 12 8212138 8212138 G C C3AR1 Missense_Mutation p.S215C 0.20 deleterious(0.01) probably_damaging(0.931) TCGA-D6-A6ES-01 12 9002841 9002841 G C A2ML1 Missense_Mutation p.E735D 0.28 deleterious(0.02) benign(0.266) TCGA-D6-A6ES-01 13 101881863 101881863 C A NALCN Nonsense_Mutation p.G503* 0.35 TCGA-D6-A6ES-01 13 113742891 113742891 G A MCF2L Missense_Mutation p.R928Q 0.20 tolerated(0.32) benign(0.192) TCGA-D6-A6ES-01 13 23915282 23915282 G A SACS Silent p.T911T 0.36 TCGA-D6-A6ES-01 13 33002230 33002230 G C N4BP2L1 5'UTR 0.24 TCGA-D6-A6ES-01 13 49794682 49794682 G - MLNR Frame_Shift_Del p.T71Pfs*59 0.28 TCGA-D6-A6ES-01 14 102027907 102027907 C A DIO3 Missense_Mutation p.A25D 0.20 deleterious_low_confidence(0) benign(0.142) TCGA-D6-A6ES-01 14 102550210 102550211 - TTTT HSP90AA1 Frame_Shift_Ins p.C542Kfs*8 0.16 TCGA-D6-A6ES-01 14 24684830 24684830 C G MDP1 Missense_Mutation p.R46P 0.34 tolerated(0.11) benign(0.009) TCGA-D6-A6ES-01 14 24684863 24684863 C T MDP1 Missense_Mutation p.G35E 0.35 deleterious(0.02) benign(0.177) TCGA-D6-A6ES-01 14 26917756 26917756 G T NOVA1 Missense_Mutation p.D311E 0.27 tolerated(0.52) unknown(0) TCGA-D6-A6ES-01 14 67940101 67940101 C T TMEM229B 3'UTR 0.32 TCGA-D6-A6ES-01 14 68193774 68193774 G A RDH12 Silent p.S175S 0.31 TCGA-D6-A6ES-01 14 71518633 71518633 C T PCNX Missense_Mutation p.S1494L 0.33 deleterious(0) probably_damaging(0.997) TCGA-D6-A6ES-01 14 77709309 77709309 C G TMEM63C Silent p.L417L 0.29 TCGA-D6-A6ES-01 14 81737200 81737200 G C STON2 Missense_Mutation p.H809Q 0.33 deleterious(0.03) possibly_damaging(0.777) TCGA-D6-A6ES-01 15 22369190 22369190 G T OR4M2 Silent p.L205L 0.28 TCGA-D6-A6ES-01 15 22956372 22956372 G C CYFIP1 Intron 0.37 TCGA-D6-A6ES-01 15 28380751 28380751 G A HERC2 Nonsense_Mutation p.Q4035* 0.35 TCGA-D6-A6ES-01 15 33991959 33991959 C G RYR3 Missense_Mutation p.R2102G 0.35 probably_damaging(0.995) TCGA-D6-A6ES-01 15 56657747 56657747 C T TEX9 Intron 0.42 TCGA-D6-A6ES-01 15 74627346 74627346 G A CCDC33 Missense_Mutation p.E686K 0.31 deleterious(0) probably_damaging(0.953) TCGA-D6-A6ES-01 15 75499829 75499829 C T C15orf39 Silent p.A480A 0.35 TCGA-D6-A6ES-01 15 89401247 89401247 G A ACAN Missense_Mutation p.G1811R 0.21 deleterious(0.01) benign(0.084) TCGA-D6-A6ES-01 16 17211668 17211668 G T XYLT1 Missense_Mutation p.L798I 0.32 tolerated(0.21) probably_damaging(0.998) TCGA-D6-A6ES-01 16 48180286 48180286 C T ABCC12 Missense_Mutation p.R17Q 0.34 tolerated(0.81) benign(0.002) TCGA-D6-A6ES-01 16 53289659 53289659 G C CHD9 Missense_Mutation p.E1393Q 0.35 probably_damaging(0.999) TCGA-D6-A6ES-01 16 67319227 67319227 G A PLEKHG4 Missense_Mutation p.E744K 0.38 deleterious(0) probably_damaging(1) TCGA-D6-A6ES-01 16 71482838 71482838 A G ZNF23 Missense_Mutation p.Y364H 0.47 deleterious(0.04) benign(0.089) TCGA-D6-A6ES-01 16 74919617 74919617 G C WDR59 Missense_Mutation p.L875V 0.36 deleterious(0) possibly_damaging(0.549) TCGA-D6-A6ES-01 16 75146567 75146567 G C LDHD Missense_Mutation p.L431V 0.35 tolerated(0.26) benign(0.304) TCGA-D6-A6ES-01 17 16335342 16335342 G A TRPV2 Missense_Mutation p.E573K 0.37 tolerated(0.68) benign(0.186) TCGA-D6-A6ES-01 17 1634161 1634161 C T WDR81 Silent p.L1296L 0.37 TCGA-D6-A6ES-01 17 1639389 1639389 C T WDR81 Silent p.I1794I 0.31 TCGA-D6-A6ES-01 17 38296830 38296830 C T CASC3 Missense_Mutation p.S10L 0.05 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-D6-A6ES-01 17 39383430 39383430 G A KRTAP9-2 Silent p.%3D 0.50 TCGA-D6-A6ES-01 17 42478745 42478745 C T GPATCH8 Missense_Mutation p.E234K 0.32 tolerated(0.54) possibly_damaging(0.594) TCGA-D6-A6ES-01 17 5337061 5337061 G A C1QBP Silent p.F168F 0.29 TCGA-D6-A6ES-01 17 55055520 55055520 C G SCPEP1 5'UTR 0.27 TCGA-D6-A6ES-01 17 56166589 56166589 C T DYNLL2 Silent p.F73F 0.25 TCGA-D6-A6ES-01 17 6683709 6683709 G A FBXO39 Silent p.L174L 0.43 TCGA-D6-A6ES-01 17 6913722 6913722 G A ALOX12 Missense_Mutation p.E658K 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-D6-A6ES-01 17 6927606 6927606 C A BCL6B Missense_Mutation p.H128Q 0.71 tolerated(0.32) possibly_damaging(0.607) TCGA-D6-A6ES-01 17 79220344 79220344 C T SLC38A10 Missense_Mutation p.R791H 0.37 tolerated(0.32) benign(0) TCGA-D6-A6ES-01 18 22806267 22806267 G T ZNF521 Missense_Mutation p.L539I 0.24 tolerated(0.85) benign(0.01) TCGA-D6-A6ES-01 18 28989738 28989738 G T DSG4 Intron 0.32 TCGA-D6-A6ES-01 18 31324832 31324832 G T ASXL3 Nonsense_Mutation p.E1674* 0.34 TCGA-D6-A6ES-01 18 3176073 3176073 C T MYOM1 Missense_Mutation p.S330N 0.19 tolerated(0.08) benign(0.261) TCGA-D6-A6ES-01 18 33263510 33263510 G C GALNT1 Missense_Mutation p.E213Q 0.37 deleterious(0.01) possibly_damaging(0.886) TCGA-D6-A6ES-01 19 10227598 10227598 C T EIF3G Missense_Mutation p.R158H 0.41 deleterious(0.02) possibly_damaging(0.608) TCGA-D6-A6ES-01 19 12738613 12738613 G A ZNF791 Silent p.V90V 0.30 TCGA-D6-A6ES-01 19 13136140 13136140 G A NFIX Silent p.K111K 0.37 TCGA-D6-A6ES-01 19 15131272 15131272 G A CCDC105 Splice_Site p.X226_splice 0.47 TCGA-D6-A6ES-01 19 15284885 15284885 A G NOTCH3 Missense_Mutation p.V1577A 0.19 deleterious(0.04) possibly_damaging(0.575) TCGA-D6-A6ES-01 19 18864339 18864339 G A CRTC1 Missense_Mutation p.E206K 0.35 deleterious(0.03) benign(0.127) TCGA-D6-A6ES-01 19 19206982 19206982 G C SLC25A42 Missense_Mutation p.E17Q 0.19 tolerated(0.39) benign(0.037) TCGA-D6-A6ES-01 19 20735341 20735341 G A ZNF737 Silent p.L56L 0.40 TCGA-D6-A6ES-01 19 33167074 33167074 G A ANKRD27 5'Flank 0.44 TCGA-D6-A6ES-01 19 36562515 36562515 G A WDR62 Missense_Mutation p.D314N 0.41 tolerated(0.05) possibly_damaging(0.664) TCGA-D6-A6ES-01 19 40398454 40398454 G T FCGBP Missense_Mutation p.H2171Q 0.12 possibly_damaging(0.537) TCGA-D6-A6ES-01 19 40872562 40872562 G A PLD3 Missense_Mutation p.E25K 0.04 tolerated_low_confidence(0.27) benign(0.118) TCGA-D6-A6ES-01 19 44589927 44589927 C G ZNF284 Missense_Mutation p.S99C 0.45 deleterious(0.02) probably_damaging(0.91) TCGA-D6-A6ES-01 19 45855464 45855464 C T ERCC2 Intron 0.40 TCGA-D6-A6ES-01 19 50164047 50164047 G A IRF3 Missense_Mutation p.T346M 0.46 deleterious(0.02) benign(0.264) TCGA-D6-A6ES-01 19 50491609 50491609 C G VRK3 Intron 0.29 TCGA-D6-A6ES-01 19 50978706 50978706 G A FAM71E1 Missense_Mutation p.R123W 0.32 deleterious(0) probably_damaging(0.996) TCGA-D6-A6ES-01 19 54849884 54849884 G C LILRA4 Silent p.T46T 0.20 TCGA-D6-A6ES-01 19 56369063 56369063 C G NLRP4 Missense_Mutation p.H102D 0.37 deleterious(0.02) possibly_damaging(0.706) TCGA-D6-A6ES-01 19 6454339 6454339 C T SLC25A23 Missense_Mutation p.E264K 0.47 deleterious(0) probably_damaging(0.977) TCGA-D6-A6ES-01 19 8468525 8468525 C T RAB11B 3'UTR 0.43 TCGA-D6-A6ES-01 1 100618068 100618068 G A LRRC39 Silent p.F275F 0.29 TCGA-D6-A6ES-01 1 110162827 110162827 C G AMPD2 5'Flank 0.42 TCGA-D6-A6ES-01 1 112318791 112318791 C T KCND3 Missense_Mutation p.E626K 0.42 deleterious_low_confidence(0.01) benign(0.292) TCGA-D6-A6ES-01 1 114165595 114165595 C T MAGI3 Nonsense_Mutation p.Q447* 0.45 TCGA-D6-A6ES-01 1 145508209 145508209 G C RBM8A Missense_Mutation p.E44Q 0.33 tolerated(0.48) benign(0.074) TCGA-D6-A6ES-01 1 152484287 152484287 G A LCE5A Missense_Mutation p.G93S 0.38 deleterious_low_confidence(0) unknown(0) TCGA-D6-A6ES-01 1 153431471 153431471 C G S100A7 Missense_Mutation p.E7Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-D6-A6ES-01 1 159035750 159035750 G A AIM2 Nonsense_Mutation p.Q256* 0.32 TCGA-D6-A6ES-01 1 16907941 16907941 C G NBPF1 Missense_Mutation p.E451D 0.06 tolerated(0.17) probably_damaging(0.992) TCGA-D6-A6ES-01 1 170705312 170705312 G A PRRX1 Silent p.V241V 0.39 TCGA-D6-A6ES-01 1 176132984 176132984 C T RFWD2 Silent p.K203K 0.17 TCGA-D6-A6ES-01 1 176668239 176668239 C T PAPPA2 Missense_Mutation p.P917L 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-D6-A6ES-01 1 198498295 198498295 C G ATP6V1G3 Missense_Mutation p.L33F 0.45 deleterious(0) probably_damaging(0.97) TCGA-D6-A6ES-01 1 205632310 205632310 G C SLC45A3 Silent p.L203L 0.43 TCGA-D6-A6ES-01 1 214625281 214625281 G A PTPN14 Nonsense_Mutation p.Q71* 0.38 TCGA-D6-A6ES-01 1 221054599 221054599 C T HLX Missense_Mutation p.S219L 0.33 deleterious(0) possibly_damaging(0.636) TCGA-D6-A6ES-01 1 2411336 2411336 C A PLCH2 Silent p.T118T 0.25 TCGA-D6-A6ES-01 1 245582994 245582994 C T KIF26B Silent p.C371C 0.30 TCGA-D6-A6ES-01 1 26655236 26655236 G C AIM1L Missense_Mutation p.I607M 0.34 deleterious(0) possibly_damaging(0.819) TCGA-D6-A6ES-01 1 27058000 27058000 C A ARID1A Missense_Mutation p.P570T 0.31 benign(0.001) TCGA-D6-A6ES-01 1 28203138 28203138 C T THEMIS2 Missense_Mutation p.S45F 0.40 deleterious(0) probably_damaging(0.988) TCGA-D6-A6ES-01 1 28282329 28282329 C T SMPDL3B Silent p.F275F 0.19 TCGA-D6-A6ES-01 1 29313977 29313977 G A EPB41 Missense_Mutation p.E10K 0.26 deleterious_low_confidence(0) benign(0.201) TCGA-D6-A6ES-01 1 29314085 29314085 G C EPB41 Missense_Mutation p.D46H 0.30 tolerated_low_confidence(0.25) benign(0.299) TCGA-D6-A6ES-01 1 38003224 38003224 C G SNIP1 3'UTR 0.31 TCGA-D6-A6ES-01 1 39763324 39763324 C G MACF1 Missense_Mutation p.F801L 0.29 benign(0.117) TCGA-D6-A6ES-01 1 39800890 39800890 C G MACF1 Intron 0.35 TCGA-D6-A6ES-01 1 55224675 55224675 C G PARS2 Missense_Mutation p.D54H 0.27 deleterious(0.02) possibly_damaging(0.868) TCGA-D6-A6ES-01 1 60521104 60521104 C A C1orf87 Missense_Mutation p.E38D 0.28 tolerated(0.23) benign(0.118) TCGA-D6-A6ES-01 1 6605202 6605202 C G NOL9 Missense_Mutation p.L261F 0.22 deleterious(0.04) probably_damaging(0.937) TCGA-D6-A6ES-01 1 71512660 71512660 C A PTGER3 Missense_Mutation p.V201F 0.28 tolerated(0.2) possibly_damaging(0.737) TCGA-D6-A6ES-01 1 74575094 74575094 A G LRRIQ3 Missense_Mutation p.L284P 0.32 deleterious(0.03) possibly_damaging(0.656) TCGA-D6-A6ES-01 1 78183706 78183706 G A USP33 Silent p.F619F 0.31 TCGA-D6-A6ES-01 20 2637154 2637154 C T NOP56 Missense_Mutation p.A373V 0.41 deleterious(0) probably_damaging(0.999) TCGA-D6-A6ES-01 20 30436231 30436231 G A FOXS1 5'Flank 0.29 TCGA-D6-A6ES-01 20 31023157 31023157 G C ASXL1 Missense_Mutation p.R881T 0.41 tolerated_low_confidence(0.06) benign(0.169) TCGA-D6-A6ES-01 20 31023208 31023208 G A ASXL1 Nonsense_Mutation p.W898* 0.35 TCGA-D6-A6ES-01 20 36964027 36964027 C A BPI Missense_Mutation p.P459Q 0.29 deleterious(0) probably_damaging(1) TCGA-D6-A6ES-01 20 60884502 60884503 - GG LAMA5 Frame_Shift_Ins p.A3660Pfs*7 0.26 TCGA-D6-A6ES-01 20 746095 746095 G A SLC52A3 Silent p.F108F 0.42 TCGA-D6-A6ES-01 21 37626126 37626126 C G DOPEY2 Silent p.L1726L 0.33 TCGA-D6-A6ES-01 21 40795314 40795314 C G LCA5L Missense_Mutation p.R142P 0.36 deleterious(0) probably_damaging(0.999) TCGA-D6-A6ES-01 22 21989383 21989383 C G CCDC116 Nonsense_Mutation p.S344* 0.29 TCGA-D6-A6ES-01 22 42522658 42522658 C A CYP2D6 Missense_Mutation p.G471V 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-D6-A6ES-01 22 42522959 42522959 C G CYP2D6 Silent p.L403L 0.17 TCGA-D6-A6ES-01 22 42536672 42536672 C G NDUFA6-AS1 3'Flank 0.21 TCGA-D6-A6ES-01 22 50750780 50750780 C T DENND6B Missense_Mutation p.E543K 0.43 tolerated(0.08) benign(0.212) TCGA-D6-A6ES-01 22 51159731 51159731 C T SHANK3 Missense_Mutation p.A1173V 0.31 benign(0.008) TCGA-D6-A6ES-01 2 110905498 110905498 G A NPHP1 Missense_Mutation p.R478C 0.32 deleterious(0.04) benign(0.111) TCGA-D6-A6ES-01 2 111691212 111691212 G C ACOXL Missense_Mutation p.G351A 0.19 deleterious(0.01) probably_damaging(1) TCGA-D6-A6ES-01 2 11696814 11696814 C G GREB1 Missense_Mutation p.S25C 0.33 deleterious(0) probably_damaging(0.999) TCGA-D6-A6ES-01 2 11911569 11911569 G A LPIN1 Silent p.L169L 0.32 TCGA-D6-A6ES-01 2 145155960 145155960 G C ZEB2 Missense_Mutation p.L932V 0.34 deleterious(0.01) possibly_damaging(0.545) TCGA-D6-A6ES-01 2 152383456 152383456 G C NEB Silent p.L7307L 0.30 TCGA-D6-A6ES-01 2 169659126 169659126 G A NOSTRIN 5'UTR 0.56 TCGA-D6-A6ES-01 2 170150718 170150718 G A LRP2 Missense_Mutation p.R198C 0.42 possibly_damaging(0.766) TCGA-D6-A6ES-01 2 176958041 176958041 G A HOXD13 Silent p.S141S 0.36 TCGA-D6-A6ES-01 2 179452442 179452442 C T TTN Silent p.V21198V 0.44 TCGA-D6-A6ES-01 2 20871119 20871119 C T GDF7 Silent p.D429D 0.30 TCGA-D6-A6ES-01 2 238253353 238253353 C G COL6A3 Missense_Mutation p.E2436D 0.30 unknown(0) TCGA-D6-A6ES-01 2 242176088 242176088 T A HDLBP Missense_Mutation p.D949V 0.35 deleterious(0) probably_damaging(0.999) TCGA-D6-A6ES-01 2 43458176 43458176 C G THADA Missense_Mutation p.E1925Q 0.45 tolerated_low_confidence(0.13) benign(0.035) TCGA-D6-A6ES-01 2 48573745 48573745 A C FOXN2 Missense_Mutation p.K131T 0.30 deleterious(0) probably_damaging(1) TCGA-D6-A6ES-01 2 48718202 48718202 C G PPP1R21 Missense_Mutation p.L498V 0.21 tolerated(0.74) probably_damaging(0.927) TCGA-D6-A6ES-01 2 55549805 55549805 G A CCDC88A Silent p.L1006L 0.39 TCGA-D6-A6ES-01 2 88405915 88405915 G A SMYD1 Silent p.L351L 0.35 TCGA-D6-A6ES-01 3 119128590 119128590 G C ARHGAP31 Missense_Mutation p.R631S 0.17 tolerated(0.34) benign(0.031) TCGA-D6-A6ES-01 3 121206688 121206688 G A POLQ Missense_Mutation p.S1697F 0.36 deleterious(0.05) benign(0.372) TCGA-D6-A6ES-01 3 137781805 137781805 C G DZIP1L Missense_Mutation p.E719D 0.20 tolerated(0.24) benign(0.079) TCGA-D6-A6ES-01 3 141499603 141499603 G A GRK7 Missense_Mutation p.D334N 0.16 deleterious(0) probably_damaging(1) TCGA-D6-A6ES-01 3 142735173 142735173 G C U2SURP Silent p.V132V 0.23 TCGA-D6-A6ES-01 3 151545457 151545457 C G AADAC Missense_Mutation p.Q233E 0.19 deleterious(0.01) possibly_damaging(0.515) TCGA-D6-A6ES-01 3 156175318 156175318 G A KCNAB1 Missense_Mutation p.G145E 0.16 deleterious(0) probably_damaging(1) TCGA-D6-A6ES-01 3 169899481 169899481 G C PHC3 Intron 0.10 TCGA-D6-A6ES-01 3 182937677 182937677 C G MCF2L2 Missense_Mutation p.E779D 0.29 deleterious(0.03) possibly_damaging(0.799) TCGA-D6-A6ES-01 3 183479328 183479328 C G YEATS2 Missense_Mutation p.L564V 0.22 tolerated_low_confidence(0.1) possibly_damaging(0.504) TCGA-D6-A6ES-01 3 183526931 183526931 T C YEATS2 Missense_Mutation p.V1378A 0.44 tolerated(0.22) benign(0.008) TCGA-D6-A6ES-01 3 43618486 43618486 C T ANO10 Missense_Mutation p.G287E 0.62 tolerated(0.07) possibly_damaging(0.759) TCGA-D6-A6ES-01 3 46786151 46786151 G A PRSS45 Missense_Mutation p.A32V 0.11 deleterious(0) possibly_damaging(0.904) TCGA-D6-A6ES-01 3 6903387 6903387 G T GRM7 Silent p.R104R 0.38 TCGA-D6-A6ES-01 4 108954379 108954379 G T HADH Missense_Mutation p.G270C 0.37 deleterious(0) probably_damaging(0.999) TCGA-D6-A6ES-01 4 123117890 123117890 T A KIAA1109 Missense_Mutation p.L385I 0.29 probably_damaging(0.99) TCGA-D6-A6ES-01 4 1902732 1902732 C T WHSC1 Silent p.I117I 0.28 TCGA-D6-A6ES-01 4 2952058 2952058 C G NOP14 Intron 0.40 TCGA-D6-A6ES-01 4 3768691 3768691 G C ADRA2C Missense_Mutation p.G120R 0.34 tolerated(0.33) probably_damaging(1) TCGA-D6-A6ES-01 4 81884833 81884833 G C C4orf22 3'Flank 0.25 TCGA-D6-A6ES-01 4 83369157 83369157 A C ENOPH1 Missense_Mutation p.S57R 0.49 tolerated(0.33) benign(0.002) TCGA-D6-A6ES-01 4 85654725 85654725 C A WDFY3 Missense_Mutation p.W2344L 0.31 deleterious(0.01) benign(0.416) TCGA-D6-A6ES-01 5 115335561 115335561 G A AQPEP Missense_Mutation p.E493K 0.32 tolerated(0.06) benign(0.073) TCGA-D6-A6ES-01 5 140229785 140229785 C T PCDHA9 Missense_Mutation p.R569W 0.37 tolerated_low_confidence(0.19) benign(0.002) TCGA-D6-A6ES-01 5 140554265 140554265 G A PCDHB7 Missense_Mutation p.V617M 0.09 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-D6-A6ES-01 5 140558387 140558387 A G PCDHB8 Missense_Mutation p.I258V 0.10 tolerated_low_confidence(0.97) benign(0) TCGA-D6-A6ES-01 5 14480078 14480078 C G TRIO Missense_Mutation p.I2098M 0.49 possibly_damaging(0.61) TCGA-D6-A6ES-01 5 145850294 145850294 A G TCERG1 Missense_Mutation p.I499V 0.40 tolerated(0.65) unknown(0) TCGA-D6-A6ES-01 5 150678169 150678169 C G SLC36A3 Missense_Mutation p.K68N 0.30 deleterious(0) probably_damaging(0.991) TCGA-D6-A6ES-01 5 169672989 169672989 G C C5orf58 Missense_Mutation p.D61H 0.25 deleterious(0) probably_damaging(0.979) TCGA-D6-A6ES-01 5 178454538 178454538 C T ZNF879 Missense_Mutation p.S33F 0.23 deleterious(0) benign(0.17) TCGA-D6-A6ES-01 5 34908826 34908826 C T RAD1 3'UTR 0.32 TCGA-D6-A6ES-01 5 6620227 6620227 G T NSUN2 Silent p.V269V 0.22 TCGA-D6-A6ES-01 6 100898172 100898172 T C SIM1 Missense_Mutation p.T107A 0.33 deleterious(0) probably_damaging(0.957) TCGA-D6-A6ES-01 6 10398657 10398657 C T TFAP2A Missense_Mutation p.R436K 0.40 deleterious(0.02) benign(0.015) TCGA-D6-A6ES-01 6 144086551 144086551 A G PHACTR2 Missense_Mutation p.K283R 0.11 tolerated_low_confidence(0.08) probably_damaging(0.994) TCGA-D6-A6ES-01 6 20490623 20490623 G CA E2F3 Frame_Shift_Ins p.E454Qfs*12 0.25 TCGA-D6-A6ES-01 6 25653629 25653629 G C SCGN Missense_Mutation p.E34D 0.32 tolerated(0.12) benign(0.002) TCGA-D6-A6ES-01 6 31625865 31625865 G C APOM Nonstop_Mutation p.*189Sext*15 0.20 TCGA-D6-A6ES-01 6 31868084 31868084 G C ZBTB12 Missense_Mutation p.I333M 0.25 tolerated(0.09) benign(0.308) TCGA-D6-A6ES-01 6 34512084 34512084 G A SPDEF Missense_Mutation p.T50M 0.26 deleterious_low_confidence(0.04) benign(0.066) TCGA-D6-A6ES-01 6 36566676 36566676 G C SRSF3 Missense_Mutation p.R86T 0.38 deleterious(0.01) unknown(0) TCGA-D6-A6ES-01 6 37298986 37298986 C G TBC1D22B 3'UTR 0.30 TCGA-D6-A6ES-01 6 74524817 74524817 C G CD109 Silent p.L1294L 0.54 TCGA-D6-A6ES-01 6 89388087 89388087 G A RNGTT Silent p.P497P 0.33 TCGA-D6-A6ES-01 6 90578437 90578437 G C CASP8AP2 RNA 0.26 TCGA-D6-A6ES-01 6 94120820 94120820 C A EPHA7 Missense_Mutation p.M77I 0.33 deleterious(0.02) benign(0.074) TCGA-D6-A6ES-01 7 1015140 1015140 C G COX19 Silent p.S2S 0.32 TCGA-D6-A6ES-01 7 119915022 119915022 C T KCND2 Silent p.I112I 0.31 TCGA-D6-A6ES-01 7 133682384 133682384 G C EXOC4 Silent p.V782V 0.30 TCGA-D6-A6ES-01 7 148768226 148768226 G A ZNF786 Silent p.F546F 0.50 TCGA-D6-A6ES-01 7 148769033 148769033 G A ZNF786 Silent p.F277F 0.38 TCGA-D6-A6ES-01 7 21639551 21639551 G C DNAH11 Missense_Mutation p.L938F 0.09 possibly_damaging(0.828) TCGA-D6-A6ES-01 7 26224617 26224617 C G NFE2L3 Missense_Mutation p.I433M 0.40 deleterious(0.01) benign(0.109) TCGA-D6-A6ES-01 7 27825078 27825078 G C TAX1BP1 Missense_Mutation p.K274N 0.38 deleterious(0) possibly_damaging(0.853) TCGA-D6-A6ES-01 7 95157168 95157168 G A ASB4 Silent p.T177T 0.38 TCGA-D6-A6ES-01 7 99654633 99654633 A G ZSCAN21 Missense_Mutation p.M2V 0.28 deleterious(0.02) possibly_damaging(0.824) TCGA-D6-A6ES-01 8 110374773 110374773 G C PKHD1L1 5'UTR 0.33 TCGA-D6-A6ES-01 8 114389345 114389345 G A CSMD3 Intron 0.50 TCGA-D6-A6ES-01 8 133899063 133899063 G A TG Silent p.Q482Q 0.24 TCGA-D6-A6ES-01 8 134237784 134237784 C A WISP1 Nonsense_Mutation p.C254* 0.26 TCGA-D6-A6ES-01 8 144999083 144999083 C T PLEC Missense_Mutation p.E1809K 0.22 unknown(0) TCGA-D6-A6ES-01 8 21843138 21843138 G A XPO7 Missense_Mutation p.G505S 0.50 tolerated(0.08) possibly_damaging(0.537) TCGA-D6-A6ES-01 8 23114104 23114104 G A CHMP7 Silent p.E263E 0.56 TCGA-D6-A6ES-01 8 62416025 62416025 C G ASPH Missense_Mutation p.E724Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-D6-A6ES-01 8 70488379 70488379 C T SULF1 Missense_Mutation p.S116L 0.28 deleterious(0.01) benign(0.273) TCGA-D6-A6ES-01 8 77618444 77618444 T C ZFHX4 Silent p.S707S 0.36 TCGA-D6-A6ES-01 9 107457533 107457533 G C OR13D1 Silent p.S277S 0.33 TCGA-D6-A6ES-01 9 112003928 112003928 G C EPB41L4B Intron 0.39 TCGA-D6-A6ES-01 9 123751969 123751969 C T C5 Missense_Mutation p.E1011K 0.40 deleterious(0) possibly_damaging(0.742) TCGA-D6-A6ES-01 9 124535309 124535309 G C DAB2IP Missense_Mutation p.Q806H 0.30 tolerated(1) benign(0.348) TCGA-D6-A6ES-01 9 124535682 124535682 G C DAB2IP Missense_Mutation p.D931H 0.42 tolerated(0.05) probably_damaging(0.975) TCGA-D6-A6ES-01 9 125562421 125562421 C G OR1K1 Missense_Mutation p.S7C 0.39 deleterious(0) benign(0.241) TCGA-D6-A6ES-01 9 136083938 136083938 C T OBP2B Missense_Mutation p.E42K 0.45 tolerated(0.69) benign(0.192) TCGA-D6-A6ES-01 9 139905086 139905086 C T ABCA2 Missense_Mutation p.E2054K 0.31 tolerated(0.73) benign(0.034) TCGA-D6-A6ES-01 9 140657182 140657182 C G EHMT1 Silent p.L519L 0.46 TCGA-D6-A6ES-01 9 140970298 140970298 G T CACNA1B Missense_Mutation p.D1629Y 0.45 deleterious(0) probably_damaging(0.979) TCGA-D6-A6ES-01 9 14784497 14784497 C T FREM1 Missense_Mutation p.R1438Q 0.39 tolerated(1) benign(0.003) TCGA-D6-A6ES-01 9 17394894 17394894 G A CNTLN Silent p.V814V 0.55 TCGA-D6-A6ES-01 9 738504 738504 G A KANK1 Missense_Mutation p.D1185N 0.67 tolerated(0.32) benign(0.146) TCGA-D6-A6ES-01 9 86903088 86903088 T C SLC28A3 Silent p.P385P 0.51 TCGA-D6-A6ES-01 9 95485020 95485020 G A BICD2 Missense_Mutation p.A175V 0.35 tolerated(0.06) benign(0.162) TCGA-D6-A6ES-01 9 98643463 98643463 A G ERCC6L2 Missense_Mutation p.N131S 0.70 tolerated(0.09) probably_damaging(0.998) TCGA-D6-A6ES-01 X 135429656 135429656 C T GPR112 Missense_Mutation p.S1264F 0.29 tolerated(0.12) benign(0.009) TCGA-D6-A6ES-01 X 140994683 140994683 C A MAGEC1 Missense_Mutation p.S498Y 0.68 tolerated_low_confidence(0.65) possibly_damaging(0.608) TCGA-D6-A6ES-01 X 50213142 50213142 G T DGKK RNA 0.57 TCGA-D6-A6ES-01 X 79279589 79279589 G A TBX22 Silent p.K128K 0.69 TCGA-D6-A74Q-01 10 105363339 105363339 C G SH3PXD2A Missense_Mutation p.D518H 0.28 deleterious(0.01) possibly_damaging(0.736) TCGA-D6-A74Q-01 10 105658669 105658669 G A OBFC1 Missense_Mutation p.H183Y 0.38 deleterious(0.02) benign(0.317) TCGA-D6-A74Q-01 10 105821188 105821188 C G COL17A1 Silent p.V318V 0.48 TCGA-D6-A74Q-01 10 105956620 105956620 C G WDR96 Silent p.L428L 0.05 TCGA-D6-A74Q-01 10 115389479 115389479 G A NRAP Silent p.N636N 0.46 TCGA-D6-A74Q-01 10 118451953 118451953 T A HSPA12A Missense_Mutation p.E191V 0.20 tolerated(0.27) benign(0.009) TCGA-D6-A74Q-01 10 128973751 128973751 A T FAM196A Silent p.T303T 0.34 TCGA-D6-A74Q-01 10 13330428 13330428 C T PHYH Missense_Mutation p.G204S 0.22 deleterious(0) probably_damaging(0.982) TCGA-D6-A74Q-01 10 134230749 134230749 G T PWWP2B 3'UTR 0.32 TCGA-D6-A74Q-01 10 13642274 13642274 T C PRPF18 Silent p.L59L 0.33 TCGA-D6-A74Q-01 10 14977537 14977537 G T DCLRE1C Missense_Mutation p.T130N 0.31 tolerated(0.17) possibly_damaging(0.631) TCGA-D6-A74Q-01 10 15655747 15655747 C G ITGA8 Missense_Mutation p.V489L 0.34 deleterious(0.02) probably_damaging(0.915) TCGA-D6-A74Q-01 10 16982109 16982109 C A CUBN Missense_Mutation p.V1824F 0.28 tolerated(0.08) possibly_damaging(0.664) TCGA-D6-A74Q-01 10 18242118 18242118 A T SLC39A12 Splice_Site 0.44 TCGA-D6-A74Q-01 10 24832592 24832592 G A KIAA1217 Missense_Mutation p.E1465K 0.29 deleterious(0) probably_damaging(0.996) TCGA-D6-A74Q-01 10 26285423 26285423 G T MYO3A Missense_Mutation p.C103F 0.08 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 10 48389980 48389980 C A RBP3 Missense_Mutation p.G300W 0.33 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 10 49440330 49440330 G C FRMPD2 Silent p.T332T 0.29 TCGA-D6-A74Q-01 10 49812818 49812818 C A ARHGAP22 Missense_Mutation p.Q8H 0.28 deleterious(0.02) possibly_damaging(0.849) TCGA-D6-A74Q-01 10 52389885 52389885 T C RP11-50E11.3 RNA 0.22 TCGA-D6-A74Q-01 10 69926399 69926399 C G MYPN Missense_Mutation p.P650R 0.57 deleterious(0) probably_damaging(0.999) TCGA-D6-A74Q-01 10 7765479 7765479 C T ITIH2 Silent p.I311I 0.37 TCGA-D6-A74Q-01 10 95381781 95381781 G A PDE6C Silent p.L272L 0.06 TCGA-D6-A74Q-01 10 96748783 96748783 T A CYP2C9 Nonstop_Mutation p.*491Rext*42 0.64 TCGA-D6-A74Q-01 11 123624753 123624753 C T OR6X1 Silent p.T158T 0.28 TCGA-D6-A74Q-01 11 123777945 123777945 C T OR8D4 Silent p.T269T 0.21 TCGA-D6-A74Q-01 11 123814526 123814526 G T OR6T1 Missense_Mutation p.T7N 0.34 deleterious(0.01) benign(0.347) TCGA-D6-A74Q-01 11 123887132 123887132 C T OR10G4 Missense_Mutation p.P284L 0.22 deleterious(0) probably_damaging(0.928) TCGA-D6-A74Q-01 11 123901010 123901010 C G OR10G8 Missense_Mutation p.I227M 0.36 tolerated(0.15) probably_damaging(1) TCGA-D6-A74Q-01 11 124179974 124179974 G T OR8D1 Missense_Mutation p.S230Y 0.39 deleterious(0) probably_damaging(0.945) TCGA-D6-A74Q-01 11 128840371 128840371 G A ARHGAP32 Silent p.V1565V 0.27 TCGA-D6-A74Q-01 11 18105280 18105280 T A SAAL1 Splice_Site p.X348_splice 0.40 TCGA-D6-A74Q-01 11 30926565 30926565 G A DCDC1 Silent p.Y1417Y 0.49 TCGA-D6-A74Q-01 11 45827727 45827727 C T SLC35C1 Silent p.I125I 0.29 TCGA-D6-A74Q-01 11 4661835 4661835 C T OR51D1 Missense_Mutation p.S272L 0.47 deleterious(0) probably_damaging(0.993) TCGA-D6-A74Q-01 11 5010886 5010886 C - MMP26 Frame_Shift_Del p.H37Ifs*5 0.25 TCGA-D6-A74Q-01 11 5067999 5067999 C G OR52J3 Missense_Mutation p.R82G 0.05 deleterious(0) possibly_damaging(0.72) TCGA-D6-A74Q-01 11 5079889 5079889 C G OR52E2 Silent p.T323T 0.41 TCGA-D6-A74Q-01 11 51412003 51412003 C - OR4A5 Frame_Shift_Del p.T132Pfs*3 0.26 TCGA-D6-A74Q-01 11 55322547 55322547 C G OR4C15 Missense_Mutation p.N255K 0.36 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-D6-A74Q-01 11 55418380 55418380 A T OR4S2 Translation_Start_Site p.M1? 0.28 deleterious(0) benign(0.007) TCGA-D6-A74Q-01 11 55541394 55541394 C T OR5D13 Missense_Mutation p.L161F 0.33 tolerated(0.31) benign(0.06) TCGA-D6-A74Q-01 11 59224883 59224883 G C OR4D6 Silent p.V150V 0.33 TCGA-D6-A74Q-01 11 59282974 59282974 C A OR4D9 Missense_Mutation p.L197I 0.32 tolerated(0.18) benign(0.077) TCGA-D6-A74Q-01 11 60714105 60714105 G A SLC15A3 Silent p.P249P 0.33 TCGA-D6-A74Q-01 11 61081939 61081939 C T DDB1 Missense_Mutation p.R477K 0.28 deleterious(0.01) probably_damaging(0.98) TCGA-D6-A74Q-01 11 6129824 6129824 G A OR56B4 Silent p.K272K 0.36 TCGA-D6-A74Q-01 11 62284988 62284988 C A AHNAK Missense_Mutation p.G5634V 0.38 probably_damaging(0.984) TCGA-D6-A74Q-01 11 62284989 62284989 C A AHNAK Nonsense_Mutation p.G5634* 0.38 TCGA-D6-A74Q-01 11 64662433 64662433 G A ATG2A 3'UTR 0.21 TCGA-D6-A74Q-01 11 64956121 64956121 G A CAPN1 Missense_Mutation p.A357T 0.13 tolerated(0.61) benign(0.035) TCGA-D6-A74Q-01 11 65390996 65390996 G T PCNXL3 Missense_Mutation p.G798C 0.29 tolerated(0.14) possibly_damaging(0.593) TCGA-D6-A74Q-01 11 6651059 6651059 G C DCHS1 Missense_Mutation p.P1627A 0.42 deleterious(0) probably_damaging(0.988) TCGA-D6-A74Q-01 11 66626550 66626550 G C LRFN4 Missense_Mutation p.E445D 0.19 tolerated(1) benign(0.042) TCGA-D6-A74Q-01 11 74056633 74056633 C G PGM2L1 Missense_Mutation p.D367H 0.07 tolerated(0.55) benign(0.277) TCGA-D6-A74Q-01 11 83770503 83770503 C A DLG2 Silent p.V258V 0.33 TCGA-D6-A74Q-01 11 94134087 94134087 G A GPR83 Silent p.F109F 0.23 TCGA-D6-A74Q-01 12 10145826 10145826 T A CLEC1B Missense_Mutation p.K202N 0.45 deleterious(0.04) benign(0.384) TCGA-D6-A74Q-01 12 10587972 10587972 G T KLRC2 Silent p.V75V 0.10 TCGA-D6-A74Q-01 12 111744770 111744770 G C CUX2 Missense_Mutation p.A302P 0.44 deleterious(0.04) probably_damaging(0.974) TCGA-D6-A74Q-01 12 113534540 113534540 G T DTX1 Silent p.T553T 0.50 TCGA-D6-A74Q-01 12 113617090 113617090 C T DDX54 Missense_Mutation p.R141Q 0.56 deleterious(0) probably_damaging(0.997) TCGA-D6-A74Q-01 12 117660597 117660597 C G NOS1 Missense_Mutation p.E1334Q 0.12 deleterious(0.01) benign(0.329) TCGA-D6-A74Q-01 12 122107361 122107361 G A MORN3 Missense_Mutation p.S10L 0.08 tolerated(0.22) benign(0.011) TCGA-D6-A74Q-01 12 122620140 122620140 G T MLXIP Silent p.A653A 0.27 TCGA-D6-A74Q-01 12 12940571 12940571 A T APOLD1 Silent p.A275A 0.46 TCGA-D6-A74Q-01 12 132404649 132404649 G T ULK1 Nonsense_Mutation p.E977* 0.23 TCGA-D6-A74Q-01 12 14664248 14664248 C T PLBD1 Missense_Mutation p.E378K 0.33 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 12 15739956 15739956 G T PTPRO Missense_Mutation p.K1127N 0.44 tolerated(0.15) possibly_damaging(0.609) TCGA-D6-A74Q-01 12 18715688 18715688 C T PIK3C2G Silent p.I1173I 0.42 TCGA-D6-A74Q-01 12 18847913 18847913 T A PLCZ1 Missense_Mutation p.L464F 0.21 deleterious(0) probably_damaging(0.996) TCGA-D6-A74Q-01 12 18865916 18865916 G T PLCZ1 Missense_Mutation p.L192I 0.35 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 12 20806919 20806919 C A PDE3A Silent p.P988P 0.27 TCGA-D6-A74Q-01 12 26985673 26985673 G A ITPR2 Silent p.I14I 0.12 TCGA-D6-A74Q-01 12 30873754 30873754 C G CAPRIN2 Missense_Mutation p.E713D 0.44 tolerated(0.3) possibly_damaging(0.893) TCGA-D6-A74Q-01 12 40422130 40422130 C A SLC2A13 Nonsense_Mutation p.E300* 0.21 TCGA-D6-A74Q-01 12 43777746 43777746 C A ADAMTS20 Missense_Mutation p.R1496M 0.54 deleterious(0) probably_damaging(0.974) TCGA-D6-A74Q-01 12 43777747 43777747 T G ADAMTS20 Silent p.R1496R 0.54 TCGA-D6-A74Q-01 12 49521986 49521986 C A TUBA1B Missense_Mutation p.V371L 0.49 deleterious_low_confidence(0.05) probably_damaging(0.909) TCGA-D6-A74Q-01 12 53607384 53607384 C A RARG Missense_Mutation p.G305V 0.47 deleterious(0.01) probably_damaging(1) TCGA-D6-A74Q-01 12 53722592 53722592 C A SP7 Missense_Mutation p.A212S 0.26 tolerated(1) benign(0.001) TCGA-D6-A74Q-01 12 54966391 54966391 A G PDE1B Missense_Mutation p.T201A 0.40 tolerated(0.18) benign(0.028) TCGA-D6-A74Q-01 12 55863538 55863538 G A OR6C70 Missense_Mutation p.R129C 0.19 deleterious_low_confidence(0) benign(0.387) TCGA-D6-A74Q-01 12 56477587 56477587 A G ERBB3 Silent p.Q45Q 0.45 TCGA-D6-A74Q-01 12 57868441 57868441 A T ARHGAP9 Missense_Mutation p.V566E 0.42 deleterious(0) probably_damaging(0.961) TCGA-D6-A74Q-01 12 57920648 57920648 G A MBD6 Missense_Mutation p.E574K 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-D6-A74Q-01 12 63963106 63963106 G C DPY19L2 Missense_Mutation p.S675C 0.41 deleterious(0) probably_damaging(0.976) TCGA-D6-A74Q-01 12 70149380 70149380 T A RAB3IP Silent p.P80P 0.46 TCGA-D6-A74Q-01 12 71016365 71016365 G T PTPRB Silent p.L171L 0.42 TCGA-D6-A74Q-01 12 7653818 7653818 G A CD163 Missense_Mutation p.S125L 0.42 deleterious(0.03) benign(0.4) TCGA-D6-A74Q-01 12 7973852 7973852 C T SLC2A14 Missense_Mutation p.A335T 0.05 tolerated(0.16) benign(0.223) TCGA-D6-A74Q-01 12 80672909 80672909 A G OTOGL Missense_Mutation p.Y955C 0.16 deleterious(0) probably_damaging(0.984) TCGA-D6-A74Q-01 12 80704456 80704456 G C OTOGL Missense_Mutation p.K1124N 0.08 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 12 8073982 8073982 C A SLC2A3 3'UTR 0.27 TCGA-D6-A74Q-01 13 111156284 111156284 G A COL4A2 Missense_Mutation p.R1410Q 0.21 possibly_damaging(0.553) TCGA-D6-A74Q-01 13 113999189 113999189 C T GRTP1 Missense_Mutation p.R184K 0.07 tolerated(0.25) benign(0.119) TCGA-D6-A74Q-01 13 20221135 20221135 C A MPHOSPH8 Missense_Mutation p.H308N 0.43 tolerated_low_confidence(0.51) benign(0) TCGA-D6-A74Q-01 13 27333515 27333515 C G GPR12 Silent p.S150S 0.49 TCGA-D6-A74Q-01 13 27333516 27333516 G A GPR12 Missense_Mutation p.S150L 0.48 deleterious(0) probably_damaging(0.995) TCGA-D6-A74Q-01 13 43839571 43839571 A T ENOX1 Nonsense_Mutation p.L525* 0.35 TCGA-D6-A74Q-01 13 79894824 79894824 C G RBM26 Missense_Mutation p.D959H 0.30 deleterious(0.04) unknown(0) TCGA-D6-A74Q-01 13 99337073 99337073 T A SLC15A1 Missense_Mutation p.I678F 0.32 tolerated(0.07) benign(0.027) TCGA-D6-A74Q-01 14 101402883 101402883 T C SNORD113-4 RNA 0.62 TCGA-D6-A74Q-01 14 102800948 102800948 C G ZNF839 Missense_Mutation p.Q492E 0.32 deleterious(0.02) possibly_damaging(0.858) TCGA-D6-A74Q-01 14 20249338 20249338 C T OR4M1 Missense_Mutation p.P286L 0.25 deleterious(0) probably_damaging(0.979) TCGA-D6-A74Q-01 14 20692494 20692494 C A OR11H6 Missense_Mutation p.S209Y 0.57 deleterious(0) benign(0.285) TCGA-D6-A74Q-01 14 23447577 23447577 G A AJUBA Nonsense_Mutation p.Q362* 0.62 TCGA-D6-A74Q-01 14 55454021 55454021 G T WDHD1 Silent p.A537A 0.27 TCGA-D6-A74Q-01 14 60921825 60921825 T A C14orf39 Missense_Mutation p.E466V 0.71 deleterious(0.03) benign(0.002) TCGA-D6-A74Q-01 14 64483263 64483263 C G SYNE2 Missense_Mutation p.L1601V 0.11 probably_damaging(0.998) TCGA-D6-A74Q-01 14 91084308 91084308 C G TTC7B Missense_Mutation p.Q611H 0.32 tolerated(0.08) probably_damaging(0.931) TCGA-D6-A74Q-01 15 22369133 22369133 G T OR4M2 Silent p.R186R 0.18 TCGA-D6-A74Q-01 15 25472073 25472073 C G SNORD115-33 5'Flank 0.28 TCGA-D6-A74Q-01 15 28380704 28380704 G C HERC2 Missense_Mutation p.H4050Q 0.34 probably_damaging(1) TCGA-D6-A74Q-01 15 42470704 42470704 C T VPS39 Silent p.P261P 0.34 TCGA-D6-A74Q-01 15 42743476 42743476 C G ZNF106 Missense_Mutation p.E309Q 0.07 tolerated(0.13) benign(0.099) TCGA-D6-A74Q-01 15 43678106 43678106 G C TUBGCP4 Missense_Mutation p.E281Q 0.09 tolerated(0.15) benign(0.084) TCGA-D6-A74Q-01 15 45968409 45968409 C T SQRDL Silent p.L255L 0.30 TCGA-D6-A74Q-01 15 50555480 50555480 G T HDC Missense_Mutation p.D52E 0.22 tolerated(1) benign(0.001) TCGA-D6-A74Q-01 15 50784949 50784949 T A USP8 Silent p.I762I 0.23 TCGA-D6-A74Q-01 15 54799343 54799343 C T UNC13C Missense_Mutation p.A1777V 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.57) TCGA-D6-A74Q-01 15 76496319 76496319 C G C15orf27 Missense_Mutation p.S420C 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.688) TCGA-D6-A74Q-01 15 76634116 76634116 C A ISL2 Silent p.S340S 0.28 TCGA-D6-A74Q-01 15 78211240 78211240 C T RP11-114H24.7 Intron 0.34 TCGA-D6-A74Q-01 15 89402183 89402183 G C ACAN Missense_Mutation p.D2123H 0.08 deleterious(0.01) possibly_damaging(0.76) TCGA-D6-A74Q-01 15 90766792 90766792 G T SEMA4B Missense_Mutation p.G288V 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-D6-A74Q-01 16 15045813 15045813 C G NPIPA1 Silent p.L328L 0.13 TCGA-D6-A74Q-01 16 21218290 21218290 T C ZP2 Missense_Mutation p.I118V 0.32 tolerated(0.15) benign(0.085) TCGA-D6-A74Q-01 16 21221024 21221024 C T ZP2 Silent p.P86P 0.25 TCGA-D6-A74Q-01 16 2376014 2376014 G A ABCA3 Nonsense_Mutation p.R106* 0.24 TCGA-D6-A74Q-01 16 25176024 25176024 C T LCMT1 Silent p.F225F 0.29 TCGA-D6-A74Q-01 16 3065291 3065291 C G CLDN6 3'UTR 0.29 TCGA-D6-A74Q-01 16 33020754 33020754 C T IGHV3OR16-8 Silent p.S54S 0.30 TCGA-D6-A74Q-01 16 46650005 46650005 C A SHCBP1 Missense_Mutation p.C150F 0.26 deleterious(0.05) benign(0.035) TCGA-D6-A74Q-01 16 5077278 5077278 C T NAGPA Splice_Site p.X426_splice 0.33 TCGA-D6-A74Q-01 16 53272347 53272347 G C CHD9 Missense_Mutation p.G909A 0.24 benign(0.396) TCGA-D6-A74Q-01 16 53730185 53730185 C T RPGRIP1L Missense_Mutation p.M36I 0.29 tolerated(0.12) benign(0.004) TCGA-D6-A74Q-01 16 54319355 54319355 G C IRX3 Silent p.L146L 0.15 TCGA-D6-A74Q-01 16 69148737 69148737 C T HAS3 Silent p.L410L 0.28 TCGA-D6-A74Q-01 16 77356280 77356280 G A ADAMTS18 Missense_Mutation p.P706S 0.28 tolerated(0.13) benign(0.117) TCGA-D6-A74Q-01 16 81726769 81726769 C T CMIP Silent p.L487L 0.46 TCGA-D6-A74Q-01 16 84218573 84218573 G A TAF1C Missense_Mutation p.R8C 0.40 tolerated(0.14) benign(0.072) TCGA-D6-A74Q-01 16 87446152 87446152 G C ZCCHC14 Silent p.V588V 0.06 TCGA-D6-A74Q-01 16 89986156 89986156 G A MC1R Missense_Mutation p.A164T 0.34 tolerated(0.18) benign(0.174) TCGA-D6-A74Q-01 17 10360894 10360894 G A MYH4 Silent p.F580F 0.63 TCGA-D6-A74Q-01 17 18907342 18907342 G C FAM83G Missense_Mutation p.Q5E 0.06 deleterious(0) probably_damaging(0.996) TCGA-D6-A74Q-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.33 deleterious(0) probably_damaging(0.994) TCGA-D6-A74Q-01 17 40939915 40939915 T A WNK4 Missense_Mutation p.S621T 0.34 tolerated(0.21) unknown(0) TCGA-D6-A74Q-01 17 41975712 41975712 G A MPP2 Missense_Mutation p.P23L 0.29 tolerated(0.12) possibly_damaging(0.543) TCGA-D6-A74Q-01 17 42827996 42827996 G A DBF4B Nonsense_Mutation p.W408* 0.28 TCGA-D6-A74Q-01 17 43530906 43530906 A T PLEKHM1 Missense_Mutation p.L771Q 0.37 deleterious(0) probably_damaging(0.913) TCGA-D6-A74Q-01 17 48452787 48452787 C A EME1 Missense_Mutation p.T73N 0.34 deleterious(0.03) possibly_damaging(0.687) TCGA-D6-A74Q-01 17 57058310 57058310 G C PPM1E Missense_Mutation p.G729A 0.38 tolerated_low_confidence(0.17) benign(0.011) TCGA-D6-A74Q-01 17 61958213 61958213 G T GH2 Missense_Mutation p.N125K 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-D6-A74Q-01 17 62018796 62018796 C T SCN4A Missense_Mutation p.D1616N 0.17 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 17 63164373 63164373 G A RGS9 Missense_Mutation p.A186T 0.10 tolerated(0.18) benign(0.325) TCGA-D6-A74Q-01 17 6942176 6942176 G T SLC16A13 Missense_Mutation p.S350I 0.54 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 17 73625553 73625553 G C RECQL5 Silent p.L650L 0.12 TCGA-D6-A74Q-01 17 73929084 73929084 C G FBF1 Silent p.A39A 0.48 TCGA-D6-A74Q-01 17 74733103 74733103 C A SRSF2 Missense_Mutation p.R47L 0.18 deleterious(0.04) possibly_damaging(0.755) TCGA-D6-A74Q-01 17 74928828 74928828 G A MGAT5B Missense_Mutation p.V476M 0.12 deleterious(0) probably_damaging(0.994) TCGA-D6-A74Q-01 17 7534132 7534132 G T SHBG Missense_Mutation p.W113L 0.70 tolerated(0.75) benign(0.012) TCGA-D6-A74Q-01 17 7579485 7579485 C A TP53 Nonsense_Mutation p.E68* 0.63 TCGA-D6-A74Q-01 17 8647480 8647480 C T CCDC42 Missense_Mutation p.A36T 0.66 deleterious(0.02) benign(0.019) TCGA-D6-A74Q-01 18 13826560 13826560 C A MC5R Missense_Mutation p.Q266K 0.35 tolerated(0.43) benign(0.009) TCGA-D6-A74Q-01 18 14542999 14542999 G A POTEC Silent p.H49H 0.17 TCGA-D6-A74Q-01 18 21399853 21399853 G C LAMA3 Missense_Mutation p.E732D 0.33 probably_damaging(0.999) TCGA-D6-A74Q-01 18 28651652 28651652 C G DSC2 Missense_Mutation p.D682H 0.06 tolerated(0.1) benign(0.401) TCGA-D6-A74Q-01 18 3155075 3155075 C G MYOM1 Missense_Mutation p.E505Q 0.61 deleterious(0.02) probably_damaging(0.917) TCGA-D6-A74Q-01 18 34081964 34081964 T A FHOD3 Splice_Site p.X135_splice 0.23 TCGA-D6-A74Q-01 18 40857225 40857225 G A SYT4 Missense_Mutation p.R8W 0.43 deleterious(0.03) benign(0.296) TCGA-D6-A74Q-01 18 43216994 43216994 G T SLC14A2 Missense_Mutation p.K230N 0.43 deleterious(0) benign(0.062) TCGA-D6-A74Q-01 18 44561717 44561717 C T TCEB3B 5'UTR 0.82 TCGA-D6-A74Q-01 18 48573328 48573328 G T SMAD4 5'UTR 0.36 TCGA-D6-A74Q-01 18 56620777 56620777 G C ZNF532 Missense_Mutation p.E966Q 0.08 deleterious(0.04) benign(0.05) TCGA-D6-A74Q-01 19 10132278 10132278 G A RDH8 Silent p.P283P 0.41 TCGA-D6-A74Q-01 19 13565959 13565959 G C CACNA1A Missense_Mutation p.L121V 0.34 possibly_damaging(0.567) TCGA-D6-A74Q-01 19 15197928 15197928 T A OR1I1 Missense_Mutation p.S18T 0.30 deleterious(0.03) benign(0.017) TCGA-D6-A74Q-01 19 16034646 16034646 G A CYP4F11 Silent p.F298F 0.29 TCGA-D6-A74Q-01 19 16902219 16902219 C T NWD1 Missense_Mutation p.S1000F 0.05 deleterious(0.01) possibly_damaging(0.642) TCGA-D6-A74Q-01 19 17001291 17001291 C G F2RL3 Missense_Mutation p.I339M 0.28 deleterious(0) possibly_damaging(0.664) TCGA-D6-A74Q-01 19 18188356 18188356 C A IL12RB1 Silent p.R173R 0.26 TCGA-D6-A74Q-01 19 18652490 18652490 C A FKBP8 Silent p.L97L 0.13 TCGA-D6-A74Q-01 19 18967087 18967087 C T UPF1 Missense_Mutation p.T601I 0.32 tolerated(0.07) benign(0.003) TCGA-D6-A74Q-01 19 21990410 21990410 T A ZNF43 Nonstop_Mutation p.*810Lext*23 0.26 TCGA-D6-A74Q-01 19 22362826 22362826 C A ZNF676 Nonsense_Mutation p.E565* 0.34 TCGA-D6-A74Q-01 19 22847473 22847473 G T ZNF492 Missense_Mutation p.E334D 0.25 deleterious(0.02) possibly_damaging(0.768) TCGA-D6-A74Q-01 19 2853584 2853584 C G ZNF555 Silent p.L507L 0.23 TCGA-D6-A74Q-01 19 31769759 31769759 C G TSHZ3 Missense_Mutation p.A314P 0.37 tolerated(0.24) possibly_damaging(0.794) TCGA-D6-A74Q-01 19 33444523 33444523 G A CEP89 Nonsense_Mutation p.Q164* 0.05 TCGA-D6-A74Q-01 19 36236089 36236089 C G U2AF1L4 Missense_Mutation p.K23N 0.09 deleterious(0) probably_damaging(0.991) TCGA-D6-A74Q-01 19 36431274 36431274 G A LRFN3 Missense_Mutation p.R316H 0.20 deleterious(0) benign(0.227) TCGA-D6-A74Q-01 19 3784149 3784149 G A MATK Missense_Mutation p.S113F 0.27 deleterious(0.03) possibly_damaging(0.702) TCGA-D6-A74Q-01 19 37870093 37870093 G C ZNF527 Missense_Mutation p.Q35H 0.30 deleterious(0) probably_damaging(0.992) TCGA-D6-A74Q-01 19 40521432 40521434 AAG - ZNF546 In_Frame_Del p.E753del 0.25 TCGA-D6-A74Q-01 19 44792214 44792214 T A ZNF235 Silent p.P458P 0.25 TCGA-D6-A74Q-01 19 44807587 44807587 G C ZNF235 5'UTR 0.06 TCGA-D6-A74Q-01 19 46124584 46124584 C G EML2 Missense_Mutation p.E536Q 0.05 deleterious(0.01) benign(0.287) TCGA-D6-A74Q-01 19 47127217 47127217 G A PTGIR Missense_Mutation p.P89L 0.36 tolerated(0.09) benign(0.026) TCGA-D6-A74Q-01 19 47589732 47589732 C A ZC3H4 Missense_Mutation p.G260V 0.38 probably_damaging(0.997) TCGA-D6-A74Q-01 19 47761887 47761887 G T CCDC9 Silent p.R25R 0.30 TCGA-D6-A74Q-01 19 47951484 47951484 C A SLC8A2 Missense_Mutation p.G449C 0.18 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 19 49142821 49142821 G C CA11 Missense_Mutation p.R209G 0.21 deleterious(0.04) possibly_damaging(0.848) TCGA-D6-A74Q-01 19 50839864 50839864 G T NAPSB RNA 0.20 TCGA-D6-A74Q-01 19 51021474 51021474 G T LRRC4B Missense_Mutation p.P499H 0.17 deleterious_low_confidence(0.05) benign(0.005) TCGA-D6-A74Q-01 19 52034669 52034669 G T SIGLEC6 Missense_Mutation p.P58T 0.27 tolerated(0.42) benign(0) TCGA-D6-A74Q-01 19 5274329 5274329 T C PTPRS Missense_Mutation p.K40E 0.28 tolerated(1) benign(0.07) TCGA-D6-A74Q-01 19 52887621 52887621 C T ZNF880 Missense_Mutation p.T263I 0.22 deleterious(0) possibly_damaging(0.873) TCGA-D6-A74Q-01 19 53913816 53913816 G A ZNF765 3'UTR 0.34 TCGA-D6-A74Q-01 19 54697304 54697304 C T TSEN34 3'UTR 0.42 TCGA-D6-A74Q-01 19 54848374 54848374 G T LILRA4 Silent p.G331G 0.25 TCGA-D6-A74Q-01 19 55143681 55143681 G C LILRB1 Silent p.L218L 0.30 TCGA-D6-A74Q-01 19 55451373 55451373 C - NLRP7 Frame_Shift_Del p.D272Tfs*16 0.27 TCGA-D6-A74Q-01 19 56499328 56499328 G A NLRP8 3'UTR 0.31 TCGA-D6-A74Q-01 19 57646877 57646877 C T ZIM3 Silent p.K276K 0.30 TCGA-D6-A74Q-01 19 57746378 57746378 A G AURKC Silent p.P237P 0.29 TCGA-D6-A74Q-01 19 58868868 58868868 G T ZNF497 Missense_Mutation p.T45K 0.29 tolerated(0.07) benign(0.073) TCGA-D6-A74Q-01 19 6734257 6734257 C A GPR108 Nonsense_Mutation p.E146* 0.36 TCGA-D6-A74Q-01 19 7987009 7987009 G C SNAPC2 Silent p.L154L 0.10 TCGA-D6-A74Q-01 19 8531242 8531242 G C HNRNPM Missense_Mutation p.E252Q 0.06 deleterious(0) probably_damaging(0.99) TCGA-D6-A74Q-01 19 9325343 9325343 G A OR7D4 Silent p.T57T 0.27 TCGA-D6-A74Q-01 19 9965001 9965001 G A OLFM2 Missense_Mutation p.P409L 0.35 deleterious(0) probably_damaging(0.973) TCGA-D6-A74Q-01 1 100546113 100546113 C A HIAT1 Silent p.L388L 0.31 TCGA-D6-A74Q-01 1 103354276 103354276 T A COL11A1 Intron 0.28 TCGA-D6-A74Q-01 1 10355164 10355164 C T KIF1B Silent p.L491L 0.26 TCGA-D6-A74Q-01 1 108298048 108298048 C T VAV3 Splice_Site p.X391_splice 0.38 TCGA-D6-A74Q-01 1 109241261 109241261 G T PRPF38B Missense_Mutation p.M198I 0.28 tolerated(0.09) benign(0.349) TCGA-D6-A74Q-01 1 109529169 109529169 G A WDR47 Missense_Mutation p.A642V 0.33 tolerated(0.1) possibly_damaging(0.521) TCGA-D6-A74Q-01 1 110201531 110201531 G A GSTM4 Silent p.K152K 0.05 TCGA-D6-A74Q-01 1 120254535 120254535 A T PHGDH 5'UTR 0.41 TCGA-D6-A74Q-01 1 12091355 12091355 G A MIIP Silent p.P325P 0.22 TCGA-D6-A74Q-01 1 12569058 12569058 C T VPS13D Nonsense_Mutation p.Q4383* 0.30 TCGA-D6-A74Q-01 1 12919682 12919682 C A PRAMEF2 Missense_Mutation p.T141K 0.26 tolerated(0.21) benign(0.264) TCGA-D6-A74Q-01 1 150444725 150444725 G A RPRD2 Missense_Mutation p.E1101K 0.31 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D6-A74Q-01 1 151108997 151108997 C A SEMA6C Missense_Mutation p.G345C 0.23 deleterious(0) probably_damaging(0.991) TCGA-D6-A74Q-01 1 152188305 152188305 A G HRNR Silent p.L1934L 0.03 TCGA-D6-A74Q-01 1 152280015 152280015 G A FLG Silent p.S2449S 0.37 TCGA-D6-A74Q-01 1 152283199 152283199 C A FLG Missense_Mutation p.R1388L 0.08 possibly_damaging(0.569) TCGA-D6-A74Q-01 1 153931024 153931024 C T CRTC2 5'UTR 0.36 TCGA-D6-A74Q-01 1 158262029 158262029 G A CD1C Missense_Mutation p.V162I 0.45 tolerated(0.24) benign(0.002) TCGA-D6-A74Q-01 1 158641151 158641151 G A SPTA1 Silent p.A527A 0.49 TCGA-D6-A74Q-01 1 158736137 158736137 G C OR6N1 Missense_Mutation p.C112W 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-D6-A74Q-01 1 15944140 15944140 G C DDI2 5'UTR 0.50 TCGA-D6-A74Q-01 1 160249959 160249959 G A PEX19 Silent p.V224V 0.18 TCGA-D6-A74Q-01 1 16531875 16531875 C A ARHGEF19 Missense_Mutation p.A543S 0.30 deleterious(0.01) possibly_damaging(0.87) TCGA-D6-A74Q-01 1 167097365 167097365 C A DUSP27 Missense_Mutation p.N999K 0.19 tolerated(0.14) benign(0.002) TCGA-D6-A74Q-01 1 167666589 167666589 C A RCSD1 Missense_Mutation p.P243H 0.50 tolerated(0.22) possibly_damaging(0.776) TCGA-D6-A74Q-01 1 176679229 176679229 C T PAPPA2 Nonsense_Mutation p.Q1190* 0.15 TCGA-D6-A74Q-01 1 183208591 183208591 G C LAMC2 Missense_Mutation p.D988H 0.20 deleterious(0.01) possibly_damaging(0.738) TCGA-D6-A74Q-01 1 185987437 185987438 CA T HMCN1 Frame_Shift_Del p.A1808Vfs*13 0.17 TCGA-D6-A74Q-01 1 196342281 196342281 G A KCNT2 Silent p.T464T 0.27 TCGA-D6-A74Q-01 1 200017398 200017398 G T NR5A2 Missense_Mutation p.A188S 0.19 tolerated(0.16) benign(0.074) TCGA-D6-A74Q-01 1 209782338 209782338 C G CAMK1G Missense_Mutation p.P217A 0.16 deleterious(0) possibly_damaging(0.657) TCGA-D6-A74Q-01 1 215963415 215963415 C A USH2A Nonsense_Mutation p.G3390* 0.16 TCGA-D6-A74Q-01 1 215990530 215990530 G A USH2A Nonsense_Mutation p.Q3127* 0.06 TCGA-D6-A74Q-01 1 220089061 220089061 T C SLC30A10 Silent p.L396L 0.49 TCGA-D6-A74Q-01 1 228556579 228556579 G A OBSCN Missense_Mutation p.E7599K 0.05 benign(0.024) TCGA-D6-A74Q-01 1 237656291 237656291 G T RYR2 Missense_Mutation p.G622V 0.47 possibly_damaging(0.622) TCGA-D6-A74Q-01 1 237656292 237656292 G C RYR2 Silent p.G622G 0.47 TCGA-D6-A74Q-01 1 237947849 237947849 G T RYR2 Missense_Mutation p.M4279I 0.34 benign(0.019) TCGA-D6-A74Q-01 1 238090211 238090211 C A RP11-193H5.1 RNA 0.50 TCGA-D6-A74Q-01 1 240255867 240255867 G A FMN2 Missense_Mutation p.R153K 0.27 unknown(0) TCGA-D6-A74Q-01 1 240255868 240255868 G T FMN2 Missense_Mutation p.R153S 0.35 unknown(0) TCGA-D6-A74Q-01 1 24401884 24401884 G A MYOM3 Missense_Mutation p.S928L 0.07 deleterious(0.01) benign(0.185) TCGA-D6-A74Q-01 1 245021350 245021350 C T HNRNPU Missense_Mutation p.R486K 0.49 deleterious(0.01) unknown(0) TCGA-D6-A74Q-01 1 247031021 247031021 T A AHCTF1 Nonsense_Mutation p.K1070* 0.25 TCGA-D6-A74Q-01 1 248084870 248084870 G A OR2T8 Missense_Mutation p.R184H 0.21 tolerated(0.13) benign(0.177) TCGA-D6-A74Q-01 1 248201492 248201492 G A OR2L2 5'UTR 0.52 TCGA-D6-A74Q-01 1 248402522 248402522 G T OR2M4 Nonsense_Mutation p.G98* 0.47 TCGA-D6-A74Q-01 1 25256172 25256172 G T RUNX3 Missense_Mutation p.A77E 0.18 deleterious(0) possibly_damaging(0.688) TCGA-D6-A74Q-01 1 27677414 27677414 G T SYTL1 Nonsense_Mutation p.E379* 0.13 TCGA-D6-A74Q-01 1 33237216 33237216 C G KIAA1522 Silent p.V812V 0.20 TCGA-D6-A74Q-01 1 45091998 45091998 G A RNF220 Silent p.R278R 0.31 TCGA-D6-A74Q-01 1 63282341 63282341 A T ATG4C Nonsense_Mutation p.R86* 0.35 TCGA-D6-A74Q-01 1 63999310 63999310 C G EFCAB7 Missense_Mutation p.F224L 0.07 tolerated(0.69) benign(0.001) TCGA-D6-A74Q-01 1 66088592 66088592 G T LEPR Missense_Mutation p.M867I 0.36 deleterious(0) probably_damaging(0.99) TCGA-D6-A74Q-01 1 71538196 71538196 C T ZRANB2 Missense_Mutation p.E113K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-D6-A74Q-01 1 874446 874446 C G SAMD11 Missense_Mutation p.R153G 0.38 tolerated(0.32) benign(0.081) TCGA-D6-A74Q-01 1 9100042 9100042 T A SLC2A5 Silent p.L234L 0.24 TCGA-D6-A74Q-01 20 17446187 17446187 G A PCSK2 Silent p.V473V 0.17 TCGA-D6-A74Q-01 20 18163851 18163851 G T CSRP2BP Silent p.T631T 0.35 TCGA-D6-A74Q-01 20 18460705 18460705 G T POLR3F Missense_Mutation p.M151I 0.28 deleterious(0) possibly_damaging(0.888) TCGA-D6-A74Q-01 20 21689200 21689200 C G PAX1 Silent p.A307A 0.25 TCGA-D6-A74Q-01 20 32880204 32880204 G A AHCY Silent p.L135L 0.12 TCGA-D6-A74Q-01 20 33711699 33711699 G A EDEM2 Missense_Mutation p.R370W 0.24 deleterious(0) probably_damaging(0.998) TCGA-D6-A74Q-01 20 35827457 35827457 C G RPN2 Missense_Mutation p.S103C 0.04 deleterious(0.05) possibly_damaging(0.852) TCGA-D6-A74Q-01 20 3686664 3686664 C T SIGLEC1 Missense_Mutation p.A145T 0.24 tolerated(0.52) benign(0.026) TCGA-D6-A74Q-01 20 47858649 47858649 C G DDX27 Silent p.L705L 0.04 TCGA-D6-A74Q-01 20 6032851 6032851 C G LRRN4 Missense_Mutation p.D199H 0.30 tolerated(0.1) possibly_damaging(0.613) TCGA-D6-A74Q-01 21 10941928 10941928 A C TPTE Missense_Mutation p.F259V 0.11 deleterious(0) possibly_damaging(0.643) TCGA-D6-A74Q-01 21 10998330 10998330 C T TPTE RNA 0.21 TCGA-D6-A74Q-01 21 16339781 16339781 T C NRIP1 Missense_Mutation p.S245G 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-D6-A74Q-01 21 16340481 16340481 C T NRIP1 Silent p.V11V 0.28 TCGA-D6-A74Q-01 21 34060668 34060668 G T SYNJ1 Missense_Mutation p.H306N 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-D6-A74Q-01 22 17072850 17072850 G A CCT8L2 Silent p.S197S 0.38 TCGA-D6-A74Q-01 22 19318815 19318815 G A HIRA 3'UTR 0.21 TCGA-D6-A74Q-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.05 deleterious(0) probably_damaging(0.999) TCGA-D6-A74Q-01 22 25753225 25753225 G A LRP5L Silent p.I145I 0.37 TCGA-D6-A74Q-01 22 29153084 29153084 A C HSCB Missense_Mutation p.K212T 0.33 deleterious(0) possibly_damaging(0.822) TCGA-D6-A74Q-01 22 31266543 31266543 C T OSBP2 Silent p.G327G 0.29 TCGA-D6-A74Q-01 22 39123305 39123305 C G GTPBP1 Missense_Mutation p.L497V 0.05 deleterious(0.03) probably_damaging(0.919) TCGA-D6-A74Q-01 22 46594409 46594409 G T PPARA Missense_Mutation p.E43D 0.27 tolerated_low_confidence(0.84) benign(0.001) TCGA-D6-A74Q-01 2 100210184 100210184 A T AFF3 Missense_Mutation p.C672S 0.42 tolerated(0.41) benign(0.016) TCGA-D6-A74Q-01 2 100916302 100916302 C T LONRF2 Missense_Mutation p.E382K 0.25 tolerated(0.22) possibly_damaging(0.76) TCGA-D6-A74Q-01 2 101652552 101652552 C T TBC1D8 Missense_Mutation p.E496K 0.35 tolerated(0.48) possibly_damaging(0.766) TCGA-D6-A74Q-01 2 103013365 103013365 G T IL18R1 3'UTR 0.29 TCGA-D6-A74Q-01 2 111431695 111431695 C T BUB1 Missense_Mutation p.D65N 0.21 deleterious(0) probably_damaging(0.999) TCGA-D6-A74Q-01 2 113984752 113984752 G A PAX8 Missense_Mutation p.A390V 0.45 deleterious(0) possibly_damaging(0.715) TCGA-D6-A74Q-01 2 120005678 120005678 G A STEAP3 Missense_Mutation p.G316R 0.09 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 2 120850833 120850833 A T EPB41L5 Missense_Mutation p.T387S 0.34 tolerated(0.55) benign(0.002) TCGA-D6-A74Q-01 2 131521072 131521072 C G AMER3 Missense_Mutation p.P476R 0.31 deleterious(0.04) possibly_damaging(0.471) TCGA-D6-A74Q-01 2 141665506 141665506 C A LRP1B Nonsense_Mutation p.E1154* 0.26 TCGA-D6-A74Q-01 2 141806652 141806652 G T LRP1B Missense_Mutation p.H564Q 0.31 benign(0.353) TCGA-D6-A74Q-01 2 142004915 142004915 C T LRP1B Missense_Mutation p.E158K 0.34 possibly_damaging(0.621) TCGA-D6-A74Q-01 2 153519208 153519208 C A PRPF40A Missense_Mutation p.R744L 0.21 deleterious(0) possibly_damaging(0.569) TCGA-D6-A74Q-01 2 157182791 157182791 G A NR4A2 Missense_Mutation p.H471Y 0.31 deleterious(0) probably_damaging(0.973) TCGA-D6-A74Q-01 2 160287558 160287558 C A BAZ2B Missense_Mutation p.M670I 0.13 benign(0.003) TCGA-D6-A74Q-01 2 163059581 163059581 G T FAP Nonsense_Mutation p.Y374* 0.30 TCGA-D6-A74Q-01 2 167163022 167163022 G A SCN9A Silent p.V155V 0.43 TCGA-D6-A74Q-01 2 168100189 168100189 G C XIRP2 Missense_Mutation p.E763Q 0.06 probably_damaging(0.986) TCGA-D6-A74Q-01 2 170063179 170063179 C A LRP2 Missense_Mutation p.G2351C 0.39 probably_damaging(1) TCGA-D6-A74Q-01 2 174228114 174228114 A G CDCA7 Missense_Mutation p.N182S 0.34 tolerated(0.49) benign(0.002) TCGA-D6-A74Q-01 2 179574494 179574494 C G TTN Missense_Mutation p.A9518P 0.35 TCGA-D6-A74Q-01 2 179641598 179641598 C T TTN Missense_Mutation p.G1665R 0.31 TCGA-D6-A74Q-01 2 192711642 192711642 C G SDPR Missense_Mutation p.D4H 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D6-A74Q-01 2 20113283 20113283 C A WDR35 3'UTR 0.30 TCGA-D6-A74Q-01 2 216214289 216214289 G T ATIC Missense_Mutation p.G564C 0.31 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 2 228884145 228884145 G T SPHKAP Silent p.V475V 0.30 TCGA-D6-A74Q-01 2 236957853 236957853 G T AGAP1 Missense_Mutation p.G681V 0.31 deleterious(0) probably_damaging(0.922) TCGA-D6-A74Q-01 2 236957875 236957875 C A AGAP1 Silent p.V688V 0.30 TCGA-D6-A74Q-01 2 237396694 237396694 C A IQCA1 Missense_Mutation p.M199I 0.14 tolerated(0.19) benign(0) TCGA-D6-A74Q-01 2 241465791 241465791 C A ANKMY1 Missense_Mutation p.C253F 0.42 tolerated(0.06) possibly_damaging(0.532) TCGA-D6-A74Q-01 2 25467060 25467060 G A DNMT3A Silent p.L605L 0.25 TCGA-D6-A74Q-01 2 26663285 26663285 C G DRC1 Missense_Mutation p.Q310E 0.34 deleterious(0.01) possibly_damaging(0.887) TCGA-D6-A74Q-01 2 27591923 27591923 C A EIF2B4 Missense_Mutation p.G143V 0.06 tolerated(0.17) benign(0.027) TCGA-D6-A74Q-01 2 3196187 3196187 C G TSSC1 Missense_Mutation p.E329D 0.06 tolerated(0.66) benign(0.001) TCGA-D6-A74Q-01 2 33817226 33817226 C T FAM98A Missense_Mutation p.M86I 0.14 deleterious(0.04) possibly_damaging(0.458) TCGA-D6-A74Q-01 2 38231329 38231329 G A RMDN2 Silent p.L561L 0.29 TCGA-D6-A74Q-01 2 43547613 43547613 G T THADA Silent p.L1470L 0.31 TCGA-D6-A74Q-01 2 48915432 48915432 G - LHCGR Frame_Shift_Del p.V503Sfs*7 0.20 TCGA-D6-A74Q-01 2 65300160 65300160 C T CEP68 Intron 0.27 TCGA-D6-A74Q-01 2 70900122 70900122 G T ADD2 Silent p.A586A 0.29 TCGA-D6-A74Q-01 2 73830425 73830425 C T ALMS1 Missense_Mutation p.S4118F 0.27 probably_damaging(0.994) TCGA-D6-A74Q-01 2 90193142 90193142 C A IGKV1D-13 Silent p.A23A 0.35 TCGA-D6-A74Q-01 2 90193143 90193143 A T IGKV1D-13 Missense_Mutation p.I24F 0.35 deleterious(0) probably_damaging(0.947) TCGA-D6-A74Q-01 2 95522778 95522778 G T ANKRD20A8P RNA 0.39 TCGA-D6-A74Q-01 2 97368398 97368398 G T LMAN2L 3'Flank 0.37 TCGA-D6-A74Q-01 3 101572575 101572575 C G NFKBIZ Nonsense_Mutation p.S402* 0.11 TCGA-D6-A74Q-01 3 105264151 105264151 G T ALCAM Missense_Mutation p.S359I 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-D6-A74Q-01 3 109023481 109023481 G A DPPA2 Missense_Mutation p.S232L 0.06 tolerated(0.74) benign(0.005) TCGA-D6-A74Q-01 3 109047884 109047884 C A DPPA4 Missense_Mutation p.G244V 0.35 deleterious(0.01) possibly_damaging(0.725) TCGA-D6-A74Q-01 3 130889723 130889723 G C NEK11 Missense_Mutation p.G464A 0.32 tolerated(0.12) benign(0.005) TCGA-D6-A74Q-01 3 13545693 13545693 T A HDAC11 Missense_Mutation p.L250Q 0.37 tolerated(0.7) benign(0.003) TCGA-D6-A74Q-01 3 13670697 13670697 G T FBLN2 Missense_Mutation p.C916F 0.38 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 3 147127967 147127967 A T ZIC1 Missense_Mutation p.H23L 0.44 deleterious_low_confidence(0.01) benign(0.024) TCGA-D6-A74Q-01 3 148459268 148459268 G A AGTR1 Missense_Mutation p.C149Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-D6-A74Q-01 3 152554073 152554073 G A P2RY1 Missense_Mutation p.A168T 0.38 deleterious(0.04) possibly_damaging(0.61) TCGA-D6-A74Q-01 3 156763172 156763172 G T LEKR1 Missense_Mutation p.R571L 0.33 deleterious(0) benign(0.433) TCGA-D6-A74Q-01 3 167272550 167272550 T A WDR49 Missense_Mutation p.N230Y 0.24 tolerated(0.08) benign(0.316) TCGA-D6-A74Q-01 3 170077988 170077988 G T SKIL 5'UTR 0.27 TCGA-D6-A74Q-01 3 170198740 170198740 A G SLC7A14 Missense_Mutation p.L444S 0.10 deleterious(0.02) benign(0.026) TCGA-D6-A74Q-01 3 171452730 171452730 C A PLD1 Missense_Mutation p.E155D 0.34 tolerated(0.47) benign(0.314) TCGA-D6-A74Q-01 3 179052292 179052292 A T ZNF639 3'UTR 0.14 TCGA-D6-A74Q-01 3 184008893 184008893 C T ECE2 Missense_Mutation p.R752W 0.21 deleterious(0.01) possibly_damaging(0.832) TCGA-D6-A74Q-01 3 186943239 186943239 G A MASP1 Silent p.T538T 0.17 TCGA-D6-A74Q-01 3 189597916 189597916 T C TP63 Intron 0.29 TCGA-D6-A74Q-01 3 196242081 196242081 C T SMCO1 5'UTR 0.08 TCGA-D6-A74Q-01 3 197598421 197598421 T C LRCH3 3'UTR 0.35 TCGA-D6-A74Q-01 3 21478633 21478633 C A ZNF385D Missense_Mutation p.V168F 0.50 tolerated(0.67) benign(0.058) TCGA-D6-A74Q-01 3 38768458 38768458 T A SCN10A Missense_Mutation p.N909I 0.49 deleterious(0) probably_damaging(0.918) TCGA-D6-A74Q-01 3 39159567 39159567 G C TTC21A Missense_Mutation p.E242Q 0.48 tolerated(0.6) benign(0.04) TCGA-D6-A74Q-01 3 39450062 39450062 G T RPSA Intron 0.40 TCGA-D6-A74Q-01 3 41977361 41977361 C G ULK4 Missense_Mutation p.D104H 0.42 tolerated(0.06) possibly_damaging(0.801) TCGA-D6-A74Q-01 3 44448933 44448933 G A TCAIM Splice_Site p.X417_splice 0.49 TCGA-D6-A74Q-01 3 48605584 48605584 C A COL7A1 Missense_Mutation p.G2605V 0.30 probably_damaging(1) TCGA-D6-A74Q-01 3 48605585 48605585 C A COL7A1 Nonsense_Mutation p.G2605* 0.30 TCGA-D6-A74Q-01 3 49850743 49850743 C G UBA7 Missense_Mutation p.R100T 0.11 tolerated(0.3) benign(0.071) TCGA-D6-A74Q-01 3 50142980 50142980 A G RBM5 Splice_Site p.X232_splice 0.43 TCGA-D6-A74Q-01 3 52245381 52245381 C T ALAS1 Silent p.F471F 0.11 TCGA-D6-A74Q-01 3 52406980 52406980 C A DNAH1 Missense_Mutation p.P2299Q 0.43 probably_damaging(1) TCGA-D6-A74Q-01 3 69088066 69088066 C T TMF1 Missense_Mutation p.R641H 0.46 deleterious(0.02) possibly_damaging(0.483) TCGA-D6-A74Q-01 3 69168663 69168663 G C LMOD3 Missense_Mutation p.N281K 0.46 deleterious(0) probably_damaging(0.999) TCGA-D6-A74Q-01 3 8661535 8661535 T G SSUH2 3'Flank 0.47 TCGA-D6-A74Q-01 3 9760228 9760228 C G CPNE9 Missense_Mutation p.R395G 0.65 deleterious(0.02) possibly_damaging(0.885) TCGA-D6-A74Q-01 4 114294539 114294539 G A ANK2 Silent p.E3931E 0.28 TCGA-D6-A74Q-01 4 120188600 120188600 C T USP53 Silent p.I366I 0.18 TCGA-D6-A74Q-01 4 134072606 134072606 C A PCDH10 Missense_Mutation p.D437E 0.11 deleterious(0) possibly_damaging(0.778) TCGA-D6-A74Q-01 4 134073136 134073136 C G PCDH10 Missense_Mutation p.A614G 0.22 tolerated(0.26) probably_damaging(0.998) TCGA-D6-A74Q-01 4 155507723 155507723 G T FGA Silent p.P286P 0.15 TCGA-D6-A74Q-01 4 170658814 170658814 C T C4orf27 Missense_Mutation p.D245N 0.22 tolerated(0.34) benign(0.097) TCGA-D6-A74Q-01 4 175897720 175897720 T C ADAM29 Silent p.R348R 0.16 TCGA-D6-A74Q-01 4 177052728 177052728 A C WDR17 Missense_Mutation p.N337H 0.25 tolerated(0.05) benign(0.018) TCGA-D6-A74Q-01 4 177071209 177071209 C A WDR17 Missense_Mutation p.P712Q 0.35 tolerated(0.69) benign(0) TCGA-D6-A74Q-01 4 184367416 184367416 C A CDKN2AIP Missense_Mutation p.S193R 0.07 tolerated(0.47) unknown(0) TCGA-D6-A74Q-01 4 30725965 30725965 G T PCDH7 Missense_Mutation p.S974I 0.40 deleterious(0.05) possibly_damaging(0.878) TCGA-D6-A74Q-01 4 39924301 39924301 C T PDS5A Missense_Mutation p.D199N 0.19 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 4 40337875 40337875 G C CHRNA9 Missense_Mutation p.Q32H 0.08 tolerated(0.4) benign(0.007) TCGA-D6-A74Q-01 4 46060249 46060249 C A GABRG1 Missense_Mutation p.A301S 0.45 deleterious(0.01) benign(0.144) TCGA-D6-A74Q-01 4 52779750 52779750 G A DCUN1D4 Silent p.%3D 0.37 TCGA-D6-A74Q-01 4 57204793 57204793 C A AASDH Silent p.P1024P 0.28 TCGA-D6-A74Q-01 4 6925573 6925573 G A TBC1D14 Missense_Mutation p.D153N 0.08 tolerated_low_confidence(0.26) benign(0.012) TCGA-D6-A74Q-01 4 73012715 73012715 C A NPFFR2 Missense_Mutation p.P252H 0.24 deleterious(0) probably_damaging(0.998) TCGA-D6-A74Q-01 4 73148804 73148804 G A ADAMTS3 3'UTR 0.06 TCGA-D6-A74Q-01 4 80828457 80828457 G A ANTXR2 3'UTR 0.46 TCGA-D6-A74Q-01 4 83552538 83552538 C G SCD5 Missense_Mutation p.R312P 0.34 tolerated(0.08) benign(0.233) TCGA-D6-A74Q-01 4 89052265 89052265 C T ABCG2 Missense_Mutation p.R160Q 0.18 deleterious(0.03) possibly_damaging(0.603) TCGA-D6-A74Q-01 4 96104154 96104154 G C UNC5C Missense_Mutation p.T782S 0.19 tolerated(0.45) benign(0.055) TCGA-D6-A74Q-01 4 99408023 99408023 T G TSPAN5 Missense_Mutation p.N49H 0.23 deleterious(0) possibly_damaging(0.903) TCGA-D6-A74Q-01 5 114483091 114483091 C A TRIM36 Missense_Mutation p.G100V 0.50 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 5 140516082 140516082 C A PCDHB5 Missense_Mutation p.P356T 0.50 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-D6-A74Q-01 5 140516083 140516083 C A PCDHB5 Missense_Mutation p.P356Q 0.49 deleterious_low_confidence(0.01) benign(0.346) TCGA-D6-A74Q-01 5 140588711 140588711 G T PCDHB12 Missense_Mutation p.D78Y 0.57 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-D6-A74Q-01 5 140723758 140723758 G T PCDHGA3 Missense_Mutation p.G53V 0.50 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D6-A74Q-01 5 150947364 150947364 G A FAT2 Missense_Mutation p.P377S 0.45 possibly_damaging(0.682) TCGA-D6-A74Q-01 5 156991418 156991418 C T ADAM19 Missense_Mutation p.E72K 0.48 deleterious(0) probably_damaging(0.993) TCGA-D6-A74Q-01 5 161112931 161112931 G A GABRA6 5'UTR 0.47 TCGA-D6-A74Q-01 5 176637659 176637659 A - NSD1 Frame_Shift_Del p.K754Nfs*14 0.32 TCGA-D6-A74Q-01 5 181715 181715 G A PLEKHG4B Missense_Mutation p.A1141T 0.30 deleterious_low_confidence(0.01) benign(0) TCGA-D6-A74Q-01 5 23509089 23509089 G A PRDM9 5'UTR 0.34 TCGA-D6-A74Q-01 5 37725077 37725077 A G WDR70 Missense_Mutation p.T547A 0.36 tolerated(0.17) benign(0.008) TCGA-D6-A74Q-01 5 40931189 40931189 A G C7 Missense_Mutation p.Q29R 0.76 tolerated(1) benign(0.002) TCGA-D6-A74Q-01 5 41004499 41004499 C G MROH2B Silent p.V1381V 0.21 TCGA-D6-A74Q-01 5 41510649 41510649 G T PLCXD3 5'UTR 0.43 TCGA-D6-A74Q-01 5 5146554 5146554 A T ADAMTS16 Missense_Mutation p.T163S 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-D6-A74Q-01 5 80256602 80256602 G C RASGRF2 Silent p.L15L 0.35 TCGA-D6-A74Q-01 6 100056662 100056662 C T PRDM13 Missense_Mutation p.P64S 0.36 tolerated(0.27) possibly_damaging(0.49) TCGA-D6-A74Q-01 6 110778142 110778142 C A SLC22A16 Missense_Mutation p.M44I 0.42 tolerated(0.16) benign(0.013) TCGA-D6-A74Q-01 6 111283710 111283710 T C GTF3C6 Splice_Site p.X121_splice 0.33 TCGA-D6-A74Q-01 6 112476784 112476784 T C LAMA4 Missense_Mutation p.T648A 0.42 tolerated(0.82) benign(0.05) TCGA-D6-A74Q-01 6 112480014 112480014 T A LAMA4 Silent p.L579L 0.20 TCGA-D6-A74Q-01 6 117252625 117252625 C A RFX6 Missense_Mutation p.P915T 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D6-A74Q-01 6 117586936 117586936 C T VGLL2 Silent p.L4L 0.21 TCGA-D6-A74Q-01 6 117642486 117642486 C A ROS1 Nonsense_Mutation p.E1905* 0.28 TCGA-D6-A74Q-01 6 117846586 117846586 G T DCBLD1 Nonsense_Mutation p.G192* 0.29 TCGA-D6-A74Q-01 6 126293443 126293443 A G HINT3 Missense_Mutation p.R120G 0.38 deleterious(0) benign(0.081) TCGA-D6-A74Q-01 6 136597220 136597220 T G BCLAF1 Missense_Mutation p.E481D 0.15 tolerated(0.61) benign(0) TCGA-D6-A74Q-01 6 137814789 137814789 G A OLIG3 Silent p.H173H 0.22 TCGA-D6-A74Q-01 6 138655531 138655531 G A KIAA1244 Missense_Mutation p.D1850N 0.32 tolerated(0.13) possibly_damaging(0.694) TCGA-D6-A74Q-01 6 144832258 144832258 T C UTRN Missense_Mutation p.M1648T 0.29 deleterious(0.01) benign(0.243) TCGA-D6-A74Q-01 6 152623178 152623178 C A SYNE1 Missense_Mutation p.K5789N 0.21 possibly_damaging(0.88) TCGA-D6-A74Q-01 6 160978583 160978583 C A LPA Missense_Mutation p.C1551F 0.28 deleterious(0) probably_damaging(0.961) TCGA-D6-A74Q-01 6 168265306 168265306 C T MLLT4 Missense_Mutation p.R61W 0.24 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 6 26273432 26273432 G T HIST1H2BI Nonsense_Mutation p.E77* 0.06 TCGA-D6-A74Q-01 6 28214796 28214796 G A ZKSCAN4 Silent p.N243N 0.46 TCGA-D6-A74Q-01 6 28227978 28227978 T C NKAPL Silent p.L277L 0.46 TCGA-D6-A74Q-01 6 30570172 30570172 G A PPP1R10 Missense_Mutation p.R752C 0.08 tolerated_low_confidence(0.24) unknown(0) TCGA-D6-A74Q-01 6 31110739 31110739 C - CCHCR1 Splice_Site p.X831_splice 0.32 TCGA-D6-A74Q-01 6 31431003 31431003 G T HCP5 RNA 0.55 TCGA-D6-A74Q-01 6 36454839 36454839 G C KCTD20 Missense_Mutation p.D383H 0.06 tolerated(0.07) benign(0.221) TCGA-D6-A74Q-01 6 407582 407582 C A IRF4 Missense_Mutation p.S447Y 0.49 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-D6-A74Q-01 6 51612708 51612708 G C PKHD1 Missense_Mutation p.P3236A 0.45 deleterious(0.02) benign(0.32) TCGA-D6-A74Q-01 6 51890007 51890007 C G PKHD1 Missense_Mutation p.S1534T 0.62 tolerated(1) benign(0.035) TCGA-D6-A74Q-01 6 56416991 56416991 G C DST Missense_Mutation p.N2910K 0.09 benign(0.038) TCGA-D6-A74Q-01 6 62604695 62604695 C A KHDRBS2 Missense_Mutation p.G219C 0.47 deleterious(0) possibly_damaging(0.533) TCGA-D6-A74Q-01 6 63990815 63990815 C A LGSN Missense_Mutation p.G214V 0.23 deleterious(0) benign(0.156) TCGA-D6-A74Q-01 6 70048882 70048882 C A BAI3 Nonsense_Mutation p.S1088* 0.34 TCGA-D6-A74Q-01 7 100189357 100189357 C T FBXO24 Silent p.P168P 0.24 TCGA-D6-A74Q-01 7 106710753 106710753 G T PRKAR2B Missense_Mutation p.R112L 0.21 deleterious(0.01) benign(0.223) TCGA-D6-A74Q-01 7 108524198 108524198 G A C7orf66 Missense_Mutation p.H72Y 0.45 tolerated_low_confidence(0.18) benign(0) TCGA-D6-A74Q-01 7 11446683 11446683 C A THSD7A Splice_Site p.X1306_splice 0.37 TCGA-D6-A74Q-01 7 126173498 126173498 G T GRM8 Silent p.I646I 0.48 TCGA-D6-A74Q-01 7 12675735 12675735 G - SCIN Frame_Shift_Del p.S463Pfs*21 0.24 TCGA-D6-A74Q-01 7 127238524 127238524 C G FSCN3 Silent p.P332P 0.23 TCGA-D6-A74Q-01 7 135078968 135078968 A T CNOT4 Silent p.T443T 0.49 TCGA-D6-A74Q-01 7 136700236 136700236 C T CHRM2 Silent p.H208H 0.22 TCGA-D6-A74Q-01 7 138312990 138312990 C T SVOPL Missense_Mutation p.G328R 0.25 tolerated(0.24) benign(0.001) TCGA-D6-A74Q-01 7 138333839 138333839 G T SVOPL Missense_Mutation p.S193Y 0.22 tolerated(1) benign(0.021) TCGA-D6-A74Q-01 7 141765242 141765242 G - MGAM Frame_Shift_Del p.D1532Ifs*3 0.38 TCGA-D6-A74Q-01 7 141952426 141952426 C T PRSS58 Missense_Mutation p.E148K 0.24 tolerated(0.25) benign(0.416) TCGA-D6-A74Q-01 7 142013014 142013014 C A TRBV4-1 5'UTR 0.47 TCGA-D6-A74Q-01 7 142124559 142124559 G - TRBV6-8 Frame_Shift_Del p.L3Sfs*17 0.22 TCGA-D6-A74Q-01 7 142499042 142499042 G A TRBC2 Missense_Mutation p.D107N 0.13 deleterious(0.04) possibly_damaging(0.813) TCGA-D6-A74Q-01 7 147914551 147914551 C T CNTNAP2 Missense_Mutation p.P1061L 0.22 deleterious(0) probably_damaging(0.987) TCGA-D6-A74Q-01 7 150648077 150648077 G A KCNH2 Silent p.L693L 0.42 TCGA-D6-A74Q-01 7 154593115 154593115 A T DPP6 Missense_Mutation p.R450S 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-D6-A74Q-01 7 20683156 20683156 G C ABCB5 Silent p.S193S 0.31 TCGA-D6-A74Q-01 7 23509711 23509711 C T IGF2BP3 Missense_Mutation p.G7R 0.33 tolerated(0.06) possibly_damaging(0.595) TCGA-D6-A74Q-01 7 23731006 23731006 C T FAM221A Intron 0.26 TCGA-D6-A74Q-01 7 23808708 23808708 A T STK31 Missense_Mutation p.D504V 0.30 tolerated(0.65) benign(0.045) TCGA-D6-A74Q-01 7 23871925 23871925 G A STK31 Silent p.T1000T 0.29 TCGA-D6-A74Q-01 7 23871926 23871926 G C STK31 Missense_Mutation p.E1001Q 0.28 tolerated_low_confidence(0.06) benign(0.019) TCGA-D6-A74Q-01 7 28452440 28452440 G T CREB5 5'UTR 0.35 TCGA-D6-A74Q-01 7 28997171 28997171 C A AC005013.5 5'Flank 0.41 TCGA-D6-A74Q-01 7 31890252 31890252 C T PDE1C Intron 0.31 TCGA-D6-A74Q-01 7 37960229 37960229 G T EPDR1 5'UTR 0.28 TCGA-D6-A74Q-01 7 40900108 40900108 C T SUGCT 3'UTR 0.50 TCGA-D6-A74Q-01 7 4152954 4152954 G A SDK1 Silent p.P1156P 0.08 TCGA-D6-A74Q-01 7 44192917 44192917 G A GCK Missense_Mutation p.S65F 0.30 deleterious(0) probably_damaging(0.999) TCGA-D6-A74Q-01 7 47408863 47408863 G T TNS3 Silent p.A460A 0.31 TCGA-D6-A74Q-01 7 6049120 6049120 C T AIMP2 Silent p.G42G 0.30 TCGA-D6-A74Q-01 7 65225141 65225141 C - SNORA15 RNA 0.22 TCGA-D6-A74Q-01 7 72413258 72413258 C T POM121 Missense_Mutation p.T644M 0.21 tolerated(0.07) probably_damaging(0.927) TCGA-D6-A74Q-01 7 72657180 72657180 G A GTF2IRD2P1 RNA 0.35 TCGA-D6-A74Q-01 7 72658219 72658219 C A GTF2IRD2P1 RNA 0.36 TCGA-D6-A74Q-01 7 72858311 72858311 C A BAZ1B Intron 0.35 TCGA-D6-A74Q-01 7 76828974 76828974 C T FGL2 Missense_Mutation p.R46K 0.07 tolerated(0.67) benign(0.001) TCGA-D6-A74Q-01 7 76950654 76950654 G A GSAP Missense_Mutation p.H664Y 0.36 tolerated(1) possibly_damaging(0.648) TCGA-D6-A74Q-01 7 82763657 82763657 G A PCLO Missense_Mutation p.S1070F 0.44 unknown(0) TCGA-D6-A74Q-01 7 89874724 89874724 C T C7orf63 5'UTR 0.27 TCGA-D6-A74Q-01 7 92763399 92763399 C A SAMD9L Missense_Mutation p.R629L 0.22 deleterious(0) benign(0.152) TCGA-D6-A74Q-01 7 94937343 94937343 G A PON1 Silent p.I226I 0.21 TCGA-D6-A74Q-01 7 97860318 97860318 C T TECPR1 Missense_Mutation p.S746N 0.11 deleterious(0.02) benign(0.019) TCGA-D6-A74Q-01 7 99752531 99752531 C A C7orf43 3'UTR 0.60 TCGA-D6-A74Q-01 7 99799319 99799319 T C GATS 3'UTR 0.47 TCGA-D6-A74Q-01 8 105507375 105507375 G A LRP12 Missense_Mutation p.S548L 0.31 deleterious(0) probably_damaging(0.996) TCGA-D6-A74Q-01 8 120431405 120431405 C G NOV Silent p.V199V 0.51 TCGA-D6-A74Q-01 8 120608131 120608131 T A ENPP2 Missense_Mutation p.I362L 0.35 tolerated_low_confidence(0.95) benign(0) TCGA-D6-A74Q-01 8 132051852 132051852 T A ADCY8 Missense_Mutation p.Q243L 0.23 deleterious(0.02) benign(0.341) TCGA-D6-A74Q-01 8 133673769 133673769 T C LRRC6 Missense_Mutation p.I39V 0.25 tolerated(0.1) benign(0.14) TCGA-D6-A74Q-01 8 133905937 133905937 C T TG Missense_Mutation p.P922S 0.07 deleterious(0) benign(0.305) TCGA-D6-A74Q-01 8 134072415 134072415 T C SLA Silent p.K37K 0.25 TCGA-D6-A74Q-01 8 139163460 139163460 C T FAM135B Silent p.E1086E 0.22 TCGA-D6-A74Q-01 8 139209765 139209765 C A FAM135B Nonsense_Mutation p.E273* 0.36 TCGA-D6-A74Q-01 8 14095174 14095174 G T SGCZ Silent p.V117V 0.25 TCGA-D6-A74Q-01 8 24772189 24772189 C A NEFM Missense_Mutation p.R295S 0.23 deleterious(0) unknown(0) TCGA-D6-A74Q-01 8 37702660 37702660 C A BRF2 Missense_Mutation p.R203L 0.32 deleterious(0) possibly_damaging(0.804) TCGA-D6-A74Q-01 8 51617248 51617248 G T SNTG1 Missense_Mutation p.S376I 0.27 deleterious(0.01) benign(0.439) TCGA-D6-A74Q-01 8 67089290 67089290 G C CRH Silent p.L141L 0.34 TCGA-D6-A74Q-01 8 77616693 77616693 G T ZFHX4 Missense_Mutation p.V124L 0.26 benign(0.315) TCGA-D6-A74Q-01 8 87679200 87679200 G A CNGB3 Silent p.L269L 0.22 TCGA-D6-A74Q-01 8 88886175 88886175 G T DCAF4L2 Missense_Mutation p.L9I 0.31 deleterious(0.02) possibly_damaging(0.573) TCGA-D6-A74Q-01 8 95897703 95897703 G C CCNE2 Silent p.L228L 0.25 TCGA-D6-A74Q-01 8 98289495 98289495 G A TSPYL5 Missense_Mutation p.S193L 0.27 tolerated(0.42) benign(0.002) TCGA-D6-A74Q-01 9 107367816 107367816 G T OR13C2 Silent p.I31I 0.25 TCGA-D6-A74Q-01 9 110249793 110249793 G A KLF4 Silent p.L294L 0.33 TCGA-D6-A74Q-01 9 112900456 112900456 G A PALM2-AKAP2 Missense_Mutation p.E878K 0.42 deleterious(0.05) possibly_damaging(0.615) TCGA-D6-A74Q-01 9 117002759 117002759 G A COL27A1 Missense_Mutation p.G943R 0.32 unknown(0) TCGA-D6-A74Q-01 9 123370287 123370287 T A MEGF9 Missense_Mutation p.K363N 0.28 tolerated(0.3) benign(0.027) TCGA-D6-A74Q-01 9 124544672 124544672 G T DAB2IP Silent p.L1127L 0.26 TCGA-D6-A74Q-01 9 125281913 125281913 A C OR1J4 Missense_Mutation p.Q165P 0.34 tolerated_low_confidence(0.06) possibly_damaging(0.637) TCGA-D6-A74Q-01 9 125563199 125563199 A T OR1K1 Silent p.R266R 0.25 TCGA-D6-A74Q-01 9 131233613 131233613 G C ODF2 Missense_Mutation p.Q149H 0.05 tolerated(0.16) benign(0.382) TCGA-D6-A74Q-01 9 13183422 13183422 G C MPDZ Missense_Mutation p.P882A 0.44 tolerated(0.06) benign(0.025) TCGA-D6-A74Q-01 9 131843396 131843396 C T DOLPP1 5'UTR 0.33 TCGA-D6-A74Q-01 9 136199074 136199074 C T SURF6 Silent p.L239L 0.30 TCGA-D6-A74Q-01 9 140137000 140137000 G A TUBB4B Silent p.A110A 0.29 TCGA-D6-A74Q-01 9 140267956 140267956 C A EXD3 Missense_Mutation p.E72D 0.26 deleterious(0) benign(0.071) TCGA-D6-A74Q-01 9 21217312 21217312 T C IFNA16 5'Flank 0.44 TCGA-D6-A74Q-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.50 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 9 27949813 27949813 C A LINGO2 Missense_Mutation p.S286I 0.49 tolerated(0.06) possibly_damaging(0.569) TCGA-D6-A74Q-01 9 35105331 35105331 C T FAM214B Missense_Mutation p.D502N 0.10 tolerated(0.2) probably_damaging(0.997) TCGA-D6-A74Q-01 9 78774046 78774046 G C PCSK5 Silent p.L526L 0.35 TCGA-D6-A74Q-01 9 8317912 8317912 G T PTPRD Missense_Mutation p.L1901I 0.45 deleterious(0) probably_damaging(0.992) TCGA-D6-A74Q-01 9 90499867 90499867 G T SPATA31E1 Silent p.L155L 0.28 TCGA-D6-A74Q-01 X 102968635 102968635 A T TMEM31 Missense_Mutation p.E72D 0.65 tolerated_low_confidence(0.46) benign(0.019) TCGA-D6-A74Q-01 X 105277365 105277365 G T SERPINA7 3'UTR 0.53 TCGA-D6-A74Q-01 X 105451293 105451293 T C MUM1L1 Missense_Mutation p.I623T 0.65 tolerated(0.25) benign(0.013) TCGA-D6-A74Q-01 X 105937453 105937453 A T RNF128 Missense_Mutation p.N47I 0.56 tolerated(0.14) benign(0.038) TCGA-D6-A74Q-01 X 111025209 111025209 C G TRPC5 Missense_Mutation p.R685T 0.65 tolerated(0.47) benign(0.001) TCGA-D6-A74Q-01 X 114357122 114357122 G A LRCH2 Missense_Mutation p.L716F 0.64 deleterious(0) probably_damaging(1) TCGA-D6-A74Q-01 X 135574491 135574491 C T BRS3 Missense_Mutation p.S386L 0.12 tolerated(1) benign(0) TCGA-D6-A74Q-01 X 151821659 151821659 C T GABRQ Missense_Mutation p.P605L 0.61 deleterious(0) probably_damaging(0.99) TCGA-D6-A74Q-01 X 37850191 37850191 C A CXorf27 Missense_Mutation p.D33E 0.64 tolerated(0.26) probably_damaging(0.959) TCGA-D6-A74Q-01 X 39921470 39921470 C A BCOR Silent p.P1450P 0.67 TCGA-D6-A74Q-01 X 47518284 47518284 C G UXT Missense_Mutation p.E27Q 0.16 tolerated(0.2) possibly_damaging(0.48) TCGA-D6-A74Q-01 X 50054110 50054110 G A CCNB3 Missense_Mutation p.A981T 0.62 tolerated(0.62) benign(0.044) TCGA-D6-A74Q-01 X 50350944 50350944 C T SHROOM4 Silent p.A1066A 0.60 TCGA-D6-A74Q-01 X 71802361 71802361 C A PHKA1 Nonsense_Mutation p.E1129* 0.17 TCGA-D6-A74Q-01 X 73423446 73423446 G C RP3-368A4.5 RNA 0.65 TCGA-D6-A74Q-01 X 73960499 73960499 A G KIAA2022 Missense_Mutation p.M1298T 0.61 tolerated_low_confidence(0.09) benign(0.001) TCGA-DQ-5624-01 10 102737432 102737432 C T SEMA4G Missense_Mutation p.S127F 0.17 deleterious(0.01) benign(0.126) TCGA-DQ-5624-01 10 103917061 103917061 C T NOLC1 Nonsense_Mutation p.Q98* 0.11 TCGA-DQ-5624-01 10 14862117 14862117 C T CDNF Missense_Mutation p.M142I 0.20 deleterious(0.01) benign(0.346) TCGA-DQ-5624-01 10 26575364 26575364 G A GAD2 Missense_Mutation p.A443T 0.27 tolerated(0.67) probably_damaging(0.996) TCGA-DQ-5624-01 11 123887072 123887072 T C OR10G4 Missense_Mutation p.M264T 0.24 tolerated(0.1) benign(0.029) TCGA-DQ-5624-01 11 4976751 4976751 G C OR51A2 Missense_Mutation p.L65V 0.11 deleterious(0) probably_damaging(1) TCGA-DQ-5624-01 11 5153246 5153246 G T OR52A5 Silent p.I209I 0.10 TCGA-DQ-5624-01 11 55653198 55653198 G C TRIM51 Missense_Mutation p.E98D 0.06 deleterious(0.01) probably_damaging(0.955) TCGA-DQ-5624-01 11 57099146 57099146 C G SSRP1 Missense_Mutation p.E407Q 0.16 tolerated(0.09) benign(0.168) TCGA-DQ-5624-01 11 61551037 61551037 C T MYRF Silent p.I1028I 0.07 TCGA-DQ-5624-01 11 73020920 73020920 T C ARHGEF17 Missense_Mutation p.W413R 0.12 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-DQ-5624-01 11 77924770 77924770 G C USP35 Missense_Mutation p.D990H 0.09 deleterious(0) probably_damaging(0.994) TCGA-DQ-5624-01 12 32793362 32793362 G A FGD4 Silent p.L732L 0.07 TCGA-DQ-5624-01 12 54675202 54675202 C G HNRNPA1 Silent p.L16L 0.09 TCGA-DQ-5624-01 12 56704786 56704786 C T CNPY2 Missense_Mutation p.R154Q 0.06 tolerated(0.48) benign(0.035) TCGA-DQ-5624-01 13 111287916 111287916 C G CARKD Missense_Mutation p.I251M 0.07 deleterious(0.05) possibly_damaging(0.875) TCGA-DQ-5624-01 13 77759426 77759426 C G MYCBP2 Missense_Mutation p.E1473Q 0.04 possibly_damaging(0.803) TCGA-DQ-5624-01 13 78214885 78214885 A G SCEL Missense_Mutation p.E638G 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-DQ-5624-01 14 102449517 102449517 C T DYNC1H1 Nonsense_Mutation p.Q375* 0.15 TCGA-DQ-5624-01 14 22434185 22434185 G C TRAV12-3 Missense_Mutation p.D80H 0.14 deleterious(0) probably_damaging(0.929) TCGA-DQ-5624-01 14 50655318 50655318 C G SOS2 Missense_Mutation p.R204T 0.13 deleterious(0.01) possibly_damaging(0.777) TCGA-DQ-5624-01 14 90756719 90756719 C T NRDE2 Missense_Mutation p.R692H 0.07 tolerated(1) benign(0.001) TCGA-DQ-5624-01 14 99959906 99959906 C T CCNK Missense_Mutation p.H85Y 0.10 deleterious(0.01) possibly_damaging(0.892) TCGA-DQ-5624-01 15 41476734 41476734 G A EXD1 Missense_Mutation p.R314C 0.27 deleterious(0) probably_damaging(1) TCGA-DQ-5624-01 15 64982656 64982656 G A OAZ2 Silent p.V90V 0.16 TCGA-DQ-5624-01 16 15029131 15029131 G A NPIPA1 5'Flank 0.30 TCGA-DQ-5624-01 16 3063730 3063730 G C CLDN9 Missense_Mutation p.V123L 0.12 deleterious(0.01) benign(0.016) TCGA-DQ-5624-01 16 3304457 3304457 C T MEFV Missense_Mutation p.R204H 0.12 tolerated(0.06) possibly_damaging(0.906) TCGA-DQ-5624-01 16 62055210 62055210 T C CDH8 Missense_Mutation p.N33S 0.16 tolerated(1) benign(0.007) TCGA-DQ-5624-01 17 11573107 11573107 C T DNAH9 Missense_Mutation p.H1117Y 0.09 benign(0.018) TCGA-DQ-5624-01 17 5462454 5462454 C T NLRP1 Nonsense_Mutation p.W521* 0.07 TCGA-DQ-5624-01 17 56247069 56247069 C G OR4D2 Missense_Mutation p.S18W 0.10 deleterious(0) probably_damaging(0.927) TCGA-DQ-5624-01 17 61573862 61573862 C T ACE Missense_Mutation p.A1163V 0.11 deleterious(0) probably_damaging(0.997) TCGA-DQ-5624-01 17 65888058 65888058 C T BPTF Missense_Mutation p.R655W 0.29 possibly_damaging(0.764) TCGA-DQ-5624-01 17 8383453 8383453 C G MYH10 Missense_Mutation p.E1858Q 0.06 probably_damaging(0.995) TCGA-DQ-5624-01 19 3823275 3823275 G A ZFR2 Missense_Mutation p.A447V 0.37 tolerated(1) benign(0.001) TCGA-DQ-5624-01 19 38951142 38951142 C A RYR1 Silent p.R830R 0.12 TCGA-DQ-5624-01 19 38985060 38985060 G A RYR1 Missense_Mutation p.E2115K 0.07 benign(0.031) TCGA-DQ-5624-01 19 48018174 48018174 C T NAPA Silent p.A8A 0.44 TCGA-DQ-5624-01 19 5667168 5667168 C G SAFB Missense_Mutation p.P816A 0.12 tolerated(0.05) unknown(0) TCGA-DQ-5624-01 19 8656945 8656945 C G ADAMTS10 Missense_Mutation p.E544Q 0.13 tolerated(0.69) benign(0.09) TCGA-DQ-5624-01 1 10683099 10683101 GGG - PEX14 In_Frame_Del p.G138del 0.14 TCGA-DQ-5624-01 1 153431379 153431379 C T S100A7 Silent p.K37K 0.08 TCGA-DQ-5624-01 1 156437415 156437415 G C MEF2D 3'UTR 0.24 TCGA-DQ-5624-01 1 170952646 170952646 T G MROH9 Missense_Mutation p.F234V 0.22 tolerated(0.08) benign(0.037) TCGA-DQ-5624-01 1 196712601 196712601 G A CFH Silent p.P1051P 0.11 TCGA-DQ-5624-01 1 216737739 216737739 G A ESRRG Silent p.L240L 0.06 TCGA-DQ-5624-01 1 227504927 227504927 G A CDC42BPA 5'UTR 0.12 TCGA-DQ-5624-01 1 231344791 231344791 G T TRIM67 Missense_Mutation p.V640L 0.04 deleterious(0.04) probably_damaging(0.978) TCGA-DQ-5624-01 1 240370553 240370553 C G FMN2 Missense_Mutation p.P814R 0.09 unknown(0) TCGA-DQ-5624-01 1 27876046 27876046 G A AHDC1 Missense_Mutation p.R861C 0.08 deleterious(0) possibly_damaging(0.835) TCGA-DQ-5624-01 1 33065901 33065901 G A ZBTB8A Missense_Mutation p.E403K 0.10 benign(0.33) TCGA-DQ-5624-01 1 36479255 36479255 G C AGO3 Missense_Mutation p.D392H 0.07 deleterious(0) possibly_damaging(0.896) TCGA-DQ-5624-01 1 66067602 66067602 C T LEPR Silent p.I454I 0.12 TCGA-DQ-5624-01 20 42935537 42935537 G A FITM2 Silent p.L173L 0.07 TCGA-DQ-5624-01 20 51871898 51871898 T C TSHZ2 Missense_Mutation p.F634S 0.17 tolerated(0.46) benign(0.002) TCGA-DQ-5624-01 22 31529912 31529912 C T INPP5J Missense_Mutation p.S475F 0.35 deleterious(0.05) benign(0.073) TCGA-DQ-5624-01 22 43308053 43308053 C A PACSIN2 Nonsense_Mutation p.E12* 0.13 TCGA-DQ-5624-01 2 133489551 133489551 C T NCKAP5 Silent p.S1734S 0.10 TCGA-DQ-5624-01 2 174104208 174104208 C G MLTK Missense_Mutation p.P448R 0.13 tolerated(0.34) possibly_damaging(0.777) TCGA-DQ-5624-01 2 179437281 179437281 C T TTN Silent p.L24526L 0.07 TCGA-DQ-5624-01 2 179595271 179595271 C G TTN Missense_Mutation p.A5997P 0.10 TCGA-DQ-5624-01 2 207174876 207174876 A G ZDBF2 Missense_Mutation p.K1875R 0.13 tolerated(0.27) benign(0) TCGA-DQ-5624-01 2 207615717 207615717 C T MDH1B Silent p.E331E 0.14 TCGA-DQ-5624-01 2 25043595 25043595 G A ADCY3 Nonsense_Mutation p.Q1084* 0.11 TCGA-DQ-5624-01 2 37474742 37474742 A T NDUFAF7 Missense_Mutation p.L360F 0.12 deleterious(0) probably_damaging(0.964) TCGA-DQ-5624-01 2 69565126 69565126 C T GFPT1 Silent p.V462V 0.36 TCGA-DQ-5624-01 2 79384217 79384217 C G REG3A 3'UTR 0.18 TCGA-DQ-5624-01 2 86439569 86439569 G C MRPL35 3'UTR 0.18 TCGA-DQ-5624-01 3 10088287 10088287 C T FANCD2 Silent p.F386F 0.13 TCGA-DQ-5624-01 3 142285095 142285095 C G ATR Missense_Mutation p.E54Q 0.06 deleterious_low_confidence(0.05) possibly_damaging(0.501) TCGA-DQ-5624-01 3 148768099 148768099 C G HLTF Missense_Mutation p.D513H 0.05 tolerated(0.07) probably_damaging(0.995) TCGA-DQ-5624-01 3 157177889 157177889 C T VEPH1 Intron 0.06 TCGA-DQ-5624-01 3 164724661 164724661 A C SI Missense_Mutation p.V1450G 0.23 deleterious(0) probably_damaging(0.989) TCGA-DQ-5624-01 3 47164195 47164195 T A SETD2 Missense_Mutation p.D644V 0.06 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-DQ-5624-01 3 47164342 47164342 G A SETD2 Missense_Mutation p.S595L 0.16 tolerated_low_confidence(1) benign(0.009) TCGA-DQ-5624-01 3 47951012 47951012 G A MAP4 Intron 0.13 TCGA-DQ-5624-01 4 151392835 151392835 C T LRBA Missense_Mutation p.R2214Q 0.09 deleterious(0) probably_damaging(0.995) TCGA-DQ-5624-01 4 155506821 155506821 G A FGA Missense_Mutation p.T587M 0.26 deleterious(0.02) benign(0.078) TCGA-DQ-5624-01 4 158242702 158242702 C T GRIA2 Missense_Mutation p.S278L 0.10 tolerated(0.24) benign(0.002) TCGA-DQ-5624-01 4 169300950 169300950 G C DDX60L Missense_Mutation p.S1383C 0.15 tolerated(0.09) probably_damaging(0.95) TCGA-DQ-5624-01 4 4543567 4543567 C T STX18 Missense_Mutation p.S42N 0.13 tolerated(0.25) benign(0.069) TCGA-DQ-5624-01 4 77476765 77476765 G A SHROOM3 Missense_Mutation p.E58K 0.12 deleterious(0.05) benign(0.099) TCGA-DQ-5624-01 5 140347664 140347664 C T PCDHAC2 Missense_Mutation p.T438M 0.22 deleterious(0) possibly_damaging(0.782) TCGA-DQ-5624-01 5 150311256 150311256 C A ZNF300P1 RNA 0.12 TCGA-DQ-5624-01 5 154287226 154287226 C G GEMIN5 Missense_Mutation p.E774Q 0.12 tolerated(0.1) benign(0.443) TCGA-DQ-5624-01 5 195216 195216 C T LRRC14B Silent p.P431P 0.17 TCGA-DQ-5624-01 5 42711358 42711358 A G GHR Missense_Mutation p.D223G 0.33 tolerated(1) possibly_damaging(0.756) TCGA-DQ-5624-01 5 54403737 54403737 C T GZMA Missense_Mutation p.R111C 0.08 tolerated(0.07) possibly_damaging(0.704) TCGA-DQ-5624-01 6 105526438 105526438 G A LIN28B Missense_Mutation p.G178E 0.10 deleterious(0.03) benign(0.242) TCGA-DQ-5624-01 6 10903148 10903148 G C SYCP2L Missense_Mutation p.R198P 0.11 tolerated(0.08) benign(0.127) TCGA-DQ-5624-01 6 123384937 123384937 A C CLVS2 3'UTR 0.13 TCGA-DQ-5624-01 6 90440541 90440541 G A MDN1 Nonsense_Mutation p.Q1682* 0.12 TCGA-DQ-5624-01 7 1015111 1015111 A T COX19 Missense_Mutation p.F12Y 0.14 deleterious(0.03) probably_damaging(0.914) TCGA-DQ-5624-01 7 128034398 128034398 C G IMPDH1 Missense_Mutation p.G571A 0.06 deleterious(0) probably_damaging(0.99) TCGA-DQ-5624-01 7 128034977 128034977 C G IMPDH1 Missense_Mutation p.E506Q 0.04 tolerated(0.25) possibly_damaging(0.457) TCGA-DQ-5624-01 7 128317777 128317777 G C FAM71F2 Missense_Mutation p.Q175H 0.08 tolerated(0.15) benign(0.081) TCGA-DQ-5624-01 7 14378223 14378223 C T DGKB Missense_Mutation p.R681Q 0.10 deleterious(0.04) probably_damaging(0.984) TCGA-DQ-5624-01 7 149575776 149575776 C T ATP6V0E2 Intron 0.19 TCGA-DQ-5624-01 7 3991530 3991530 G A SDK1 Silent p.A376A 0.08 TCGA-DQ-5624-01 7 77885755 77885755 C T MAGI2 Missense_Mutation p.D518N 0.09 deleterious(0.01) possibly_damaging(0.659) TCGA-DQ-5624-01 7 86415655 86415655 C T GRM3 Missense_Mutation p.R183C 0.38 deleterious(0) probably_damaging(1) TCGA-DQ-5624-01 7 98998040 98998040 C T PDAP1 Missense_Mutation p.R74H 0.16 tolerated(0.19) benign(0.001) TCGA-DQ-5624-01 8 105456608 105456608 G A DPYS Missense_Mutation p.R221C 0.09 deleterious(0) probably_damaging(0.998) TCGA-DQ-5624-01 8 131129204 131129204 C A ASAP1 Missense_Mutation p.V640F 0.33 deleterious(0) possibly_damaging(0.486) TCGA-DQ-5624-01 8 140631260 140631260 C T KCNK9 Silent p.L122L 0.15 TCGA-DQ-5624-01 8 142367126 142367126 C T GPR20 Missense_Mutation p.V300I 0.10 tolerated(0.07) benign(0.075) TCGA-DQ-5624-01 8 22102500 22102500 C T POLR3D 5'Flank 0.16 TCGA-DQ-5624-01 8 85785593 85785593 C T RALYL Missense_Mutation p.R229C 0.20 deleterious(0) probably_damaging(0.975) TCGA-DQ-5624-01 9 104239327 104239327 C T TMEM246 Silent p.R16R 0.20 TCGA-DQ-5624-01 9 113169875 113169875 C T SVEP1 Missense_Mutation p.A2669T 0.22 benign(0.012) TCGA-DQ-5624-01 9 113171187 113171187 A G SVEP1 Silent p.C2231C 0.18 TCGA-DQ-5624-01 9 5923143 5923143 C T KIAA2026 Silent p.K951K 0.09 TCGA-DQ-5624-01 9 84199063 84199063 C T TLE1 3'UTR 0.12 TCGA-DQ-5624-01 X 100117563 100117563 C T NOX1 Splice_Site p.X164_splice 0.11 TCGA-DQ-5624-01 X 104464968 104464968 A T TEX13A Missense_Mutation p.N38K 0.14 deleterious(0) probably_damaging(0.998) TCGA-DQ-5624-01 X 118220567 118220567 T C KIAA1210 Silent p.Q1542Q 0.15 TCGA-DQ-5624-01 X 144904513 144904513 G A SLITRK2 Silent p.G190G 0.07 TCGA-DQ-5624-01 X 23803921 23803921 G A SAT1 Missense_Mutation p.R155K 0.18 deleterious(0.02) benign(0.077) TCGA-DQ-5624-01 X 53674496 53674496 C T HUWE1 Missense_Mutation p.D56N 0.08 probably_damaging(0.987) TCGA-DQ-5624-01 X 54784515 54784515 C T ITIH6 Silent p.V664V 0.12 TCGA-DQ-5625-01 10 103588905 103588905 C A KCNIP2 Missense_Mutation p.G107V 0.27 deleterious(0) probably_damaging(0.933) TCGA-DQ-5625-01 10 103901291 103901291 G A PPRC1 Missense_Mutation p.R1009K 0.17 deleterious_low_confidence(0.05) benign(0.168) TCGA-DQ-5625-01 10 112760233 112760233 G C SHOC2 Missense_Mutation p.R301T 0.22 tolerated(0.53) benign(0.006) TCGA-DQ-5625-01 10 62648790 62648790 C T RHOBTB1 Silent p.R212R 0.21 TCGA-DQ-5625-01 10 88203112 88203112 G A WAPAL Missense_Mutation p.H1111Y 0.17 deleterious(0) benign(0.153) TCGA-DQ-5625-01 10 89472945 89472946 AG - PAPSS2 Frame_Shift_Del p.R87Kfs*18 0.12 TCGA-DQ-5625-01 10 99196128 99196128 G C EXOSC1 3'UTR 0.23 TCGA-DQ-5625-01 11 124618357 124618357 C T VSIG2 Silent p.A260A 0.39 TCGA-DQ-5625-01 11 20483563 20483563 G T PRMT3 Silent p.V370V 0.19 TCGA-DQ-5625-01 11 27362349 27362349 C G CCDC34 Missense_Mutation p.E267D 0.25 deleterious(0.03) possibly_damaging(0.854) TCGA-DQ-5625-01 11 31329370 31329370 G C DCDC1 Missense_Mutation p.H84D 0.21 tolerated(0.06) benign(0.015) TCGA-DQ-5625-01 11 32956153 32956153 G C QSER1 Missense_Mutation p.E988Q 0.23 deleterious(0.01) benign(0.33) TCGA-DQ-5625-01 11 32956461 32956461 G C QSER1 Missense_Mutation p.Q1090H 0.19 tolerated(0.06) possibly_damaging(0.503) TCGA-DQ-5625-01 11 32956840 32956840 G C QSER1 Missense_Mutation p.D1217H 0.21 deleterious(0) possibly_damaging(0.527) TCGA-DQ-5625-01 11 47261735 47261735 C T ACP2 Missense_Mutation p.V402I 0.19 tolerated(0.22) benign(0.013) TCGA-DQ-5625-01 11 47600853 47600853 G A NDUFS3 Missense_Mutation p.V34M 0.07 tolerated(0.23) benign(0.01) TCGA-DQ-5625-01 11 55540942 55540942 G C OR5D13 Missense_Mutation p.S10T 0.20 tolerated(0.45) benign(0.002) TCGA-DQ-5625-01 11 59828723 59828723 T C MS4A3 Silent p.N30N 0.37 TCGA-DQ-5625-01 11 65622799 65622799 G A CFL1 3'UTR 0.10 TCGA-DQ-5625-01 11 66407477 66407477 G C RBM4 Missense_Mutation p.E99Q 0.25 deleterious(0.04) benign(0.045) TCGA-DQ-5625-01 11 67395432 67395432 C T NUDT8 Silent p.L232L 0.14 TCGA-DQ-5625-01 11 69486560 69486560 C G ORAOV1 Missense_Mutation p.A62P 0.04 tolerated(0.08) benign(0.008) TCGA-DQ-5625-01 11 70031712 70031712 G C ANO1 Missense_Mutation p.E869Q 0.06 deleterious(0) probably_damaging(0.964) TCGA-DQ-5625-01 11 76872097 76872097 A T MYO7A Nonsense_Mutation p.K427* 0.28 TCGA-DQ-5625-01 11 77911809 77911809 C T USP35 Silent p.F384F 0.15 TCGA-DQ-5625-01 12 101510524 101510524 G A ANO4 Missense_Mutation p.E805K 0.20 tolerated(1) benign(0.025) TCGA-DQ-5625-01 12 122825752 122825752 T G CLIP1 Silent p.R667R 0.22 TCGA-DQ-5625-01 12 133363026 133363026 G A GOLGA3 Missense_Mutation p.R1008C 0.41 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 12 27113571 27113571 A G FGFR1OP2 Intron 0.15 TCGA-DQ-5625-01 12 31255240 31255241 - T DDX11 Frame_Shift_Ins p.Q757Pfs*25 0.16 TCGA-DQ-5625-01 12 32490488 32490488 G C BICD1 Missense_Mutation p.E770Q 0.19 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 12 3647844 3647844 T A PRMT8 Intron 0.25 TCGA-DQ-5625-01 12 463358 463358 C T KDM5A Missense_Mutation p.E305K 0.16 deleterious(0) probably_damaging(0.928) TCGA-DQ-5625-01 12 50388028 50388028 G C RACGAP1 Missense_Mutation p.L409V 0.22 deleterious(0.03) benign(0.043) TCGA-DQ-5625-01 12 51279041 51279041 A T TMPRSS12 Missense_Mutation p.N222I 0.18 tolerated(0.21) benign(0.035) TCGA-DQ-5625-01 12 53605612 53605612 G C RARG Missense_Mutation p.P405A 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-DQ-5625-01 12 57627425 57627425 G A SHMT2 Missense_Mutation p.R368Q 0.16 tolerated(0.3) benign(0.407) TCGA-DQ-5625-01 12 6091103 6091103 C T VWF Missense_Mutation p.R2379H 0.20 deleterious(0) possibly_damaging(0.84) TCGA-DQ-5625-01 12 70964817 70964817 T C PTPRB Missense_Mutation p.E1120G 0.06 deleterious(0.02) possibly_damaging(0.907) TCGA-DQ-5625-01 12 76740543 76740543 C T BBS10 Missense_Mutation p.E408K 0.27 tolerated(0.05) benign(0.086) TCGA-DQ-5625-01 12 7882117 7882117 T A CLEC4C 3'UTR 0.29 TCGA-DQ-5625-01 12 960910 960910 C T WNK1 Intron 0.12 TCGA-DQ-5625-01 13 100635121 100635121 A G ZIC2 Missense_Mutation p.N268S 0.19 tolerated(0.5) benign(0.191) TCGA-DQ-5625-01 13 25008562 25008562 A G PARP4 Missense_Mutation p.W1573R 0.17 tolerated(0.06) possibly_damaging(0.564) TCGA-DQ-5625-01 13 31821997 31821997 C G B3GALTL Missense_Mutation p.S118C 0.30 deleterious(0.03) possibly_damaging(0.897) TCGA-DQ-5625-01 14 101513657 101513657 C T MIR381HG Intron 0.45 TCGA-DQ-5625-01 14 24686415 24686415 G C NEDD8 Missense_Mutation p.T55R 0.30 deleterious(0.01) benign(0.224) TCGA-DQ-5625-01 14 47504314 47504314 A C MDGA2 Missense_Mutation p.N573K 0.15 deleterious(0.02) possibly_damaging(0.828) TCGA-DQ-5625-01 14 50597372 50597372 C T SOS2 Missense_Mutation p.E1062K 0.15 tolerated(0.11) possibly_damaging(0.83) TCGA-DQ-5625-01 14 50597378 50597378 C T SOS2 Missense_Mutation p.E1060K 0.16 tolerated(0.11) benign(0.23) TCGA-DQ-5625-01 14 74825604 74825604 T C VRTN 3'UTR 0.19 TCGA-DQ-5625-01 14 79175742 79175742 G T NRXN3 Missense_Mutation p.M95I 0.16 tolerated(0.09) possibly_damaging(0.593) TCGA-DQ-5625-01 14 95596530 95596530 C T DICER1 Splice_Site p.X147_splice 0.16 TCGA-DQ-5625-01 15 101791398 101791398 G A CHSY1 Silent p.F88F 0.43 TCGA-DQ-5625-01 15 25924588 25924588 G A ATP10A Missense_Mutation p.A1467V 0.20 deleterious_low_confidence(0.02) benign(0.037) TCGA-DQ-5625-01 15 44085227 44085227 C T SERF2 Missense_Mutation p.S21L 0.23 tolerated_low_confidence(0.84) possibly_damaging(0.651) TCGA-DQ-5625-01 15 45962152 45962152 T G SQRDL Silent p.A144A 0.15 TCGA-DQ-5625-01 15 79339164 79339164 G A RASGRF1 Missense_Mutation p.R268C 0.15 deleterious(0) probably_damaging(0.987) TCGA-DQ-5625-01 15 81241096 81241096 C G KIAA1199 Intron 0.20 TCGA-DQ-5625-01 15 81598343 81598343 G A IL16 Missense_Mutation p.G1172E 0.19 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 15 84241361 84241361 G A SH3GL3 Missense_Mutation p.E126K 0.14 deleterious(0) possibly_damaging(0.53) TCGA-DQ-5625-01 15 90171488 90171488 C G KIF7 3'UTR 0.25 TCGA-DQ-5625-01 16 21654396 21654396 G A IGSF6 Missense_Mutation p.S222F 0.39 deleterious(0.02) benign(0.029) TCGA-DQ-5625-01 16 49764853 49764853 G C ZNF423 Missense_Mutation p.Q36E 0.19 tolerated_low_confidence(1) benign(0) TCGA-DQ-5625-01 16 51172806 51172806 C T SALL1 Silent p.P1109P 0.35 TCGA-DQ-5625-01 16 57953078 57953078 C T CNGB1 Missense_Mutation p.D628N 0.31 tolerated(0.16) benign(0.002) TCGA-DQ-5625-01 16 58742037 58742037 G C GOT2 3'UTR 0.11 TCGA-DQ-5625-01 16 66975486 66975486 C G CES2 Missense_Mutation p.D395E 0.22 tolerated(0.37) benign(0.422) TCGA-DQ-5625-01 16 71823366 71823366 C G AP1G1 Missense_Mutation p.R6T 0.17 tolerated(0.05) probably_damaging(0.986) TCGA-DQ-5625-01 16 72046112 72046112 C A DHODH Missense_Mutation p.T62N 0.23 tolerated(0.13) benign(0.042) TCGA-DQ-5625-01 16 72821072 72821072 G A ZFHX3 Silent p.F3701F 0.21 TCGA-DQ-5625-01 16 8989591 8989591 C G USP7 Missense_Mutation p.E943Q 0.40 deleterious(0.04) benign(0.44) TCGA-DQ-5625-01 17 10233795 10233795 C T MYH13 Missense_Mutation p.D782N 0.29 deleterious(0) probably_damaging(0.995) TCGA-DQ-5625-01 17 10359162 10359162 C G MYH4 Silent p.R675R 0.18 TCGA-DQ-5625-01 17 12656440 12656440 C G MYOCD Missense_Mutation p.A612G 0.24 tolerated(0.39) benign(0.005) TCGA-DQ-5625-01 17 27061083 27061083 G A NEK8 Missense_Mutation p.E44K 0.15 deleterious(0.01) benign(0.108) TCGA-DQ-5625-01 17 27903555 27903555 C G GIT1 Silent p.R464R 0.21 TCGA-DQ-5625-01 17 37188434 37188434 C T LRRC37A11P RNA 0.19 TCGA-DQ-5625-01 17 39296332 39296332 C T KRTAP4-6 Silent p.Q136Q 0.14 TCGA-DQ-5625-01 17 42399067 42399067 C A SLC25A39 Splice_Site p.X131_splice 0.12 TCGA-DQ-5625-01 17 4799024 4799024 G T MINK1 Silent p.L1087L 0.17 TCGA-DQ-5625-01 17 61623093 61623093 G C KCNH6 Missense_Mutation p.E939Q 0.20 tolerated_low_confidence(0.47) benign(0.006) TCGA-DQ-5625-01 17 6722633 6722633 C T TEKT1 Missense_Mutation p.D79N 0.22 tolerated(0.61) benign(0.005) TCGA-DQ-5625-01 17 6722667 6722667 G C TEKT1 Silent p.L67L 0.25 TCGA-DQ-5625-01 17 6722673 6722673 C G TEKT1 Missense_Mutation p.Q65H 0.17 deleterious(0.04) probably_damaging(0.927) TCGA-DQ-5625-01 17 7192917 7192917 G A YBX2 Nonsense_Mutation p.Q326* 0.21 TCGA-DQ-5625-01 17 7192918 7192918 G A YBX2 Silent p.F325F 0.21 TCGA-DQ-5625-01 17 7193599 7193599 G A YBX2 Missense_Mutation p.R239W 0.19 deleterious(0) possibly_damaging(0.689) TCGA-DQ-5625-01 17 74003878 74003878 G A EVPL Missense_Mutation p.S1803F 0.26 deleterious(0) probably_damaging(0.998) TCGA-DQ-5625-01 17 9631983 9631983 C G USP43 Silent p.V1016V 0.45 TCGA-DQ-5625-01 18 60052041 60052041 T A TNFRSF11A Missense_Mutation p.F542Y 0.13 deleterious(0) probably_damaging(0.997) TCGA-DQ-5625-01 19 10883279 10883279 C G DNM2 Missense_Mutation p.I120M 0.20 deleterious(0) probably_damaging(0.996) TCGA-DQ-5625-01 19 17534558 17534558 T A MVB12A Missense_Mutation p.L197Q 0.19 deleterious(0) probably_damaging(0.989) TCGA-DQ-5625-01 19 18499466 18499466 C T GDF15 Silent p.V216V 0.24 TCGA-DQ-5625-01 19 34263838 34263838 G A CHST8 Missense_Mutation p.R382Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-DQ-5625-01 19 3613204 3613204 C G CACTIN Silent p.L546L 0.27 TCGA-DQ-5625-01 19 38997014 38997014 G T RYR1 Silent p.L2871L 0.19 TCGA-DQ-5625-01 19 39879407 39879407 C G PAF1 Missense_Mutation p.M245I 0.29 tolerated(0.07) possibly_damaging(0.449) TCGA-DQ-5625-01 19 39879807 39879807 C A PAF1 Nonsense_Mutation p.E165* 0.24 TCGA-DQ-5625-01 19 40741810 40741810 C T AKT2 Missense_Mutation p.D388N 0.12 tolerated(0.1) benign(0.035) TCGA-DQ-5625-01 19 45895566 45895566 C G PPP1R13L Missense_Mutation p.E463Q 0.11 deleterious(0.04) benign(0.403) TCGA-DQ-5625-01 19 48389471 48389471 G A SULT2A1 Missense_Mutation p.T15I 0.04 tolerated(0.2) benign(0.001) TCGA-DQ-5625-01 19 49979010 49979010 C G FLT3LG Missense_Mutation p.F32L 0.23 deleterious(0) possibly_damaging(0.593) TCGA-DQ-5625-01 19 52869339 52869339 A G ZNF610 Silent p.E236E 0.23 TCGA-DQ-5625-01 19 53432295 53432295 G C ZNF321P Missense_Mutation p.S188C 0.18 deleterious(0) probably_damaging(0.978) TCGA-DQ-5625-01 19 56466905 56466905 G A NLRP8 Missense_Mutation p.R494Q 0.21 tolerated(1) benign(0.041) TCGA-DQ-5625-01 19 58067717 58067717 C T ZNF550 Silent p.V3V 0.16 TCGA-DQ-5625-01 19 58067819 58067819 C G ZNF550 5'Flank 0.24 TCGA-DQ-5625-01 19 7965184 7965184 G T LRRC8E Missense_Mutation p.G593W 0.11 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 19 8657648 8657648 C T ADAMTS10 Missense_Mutation p.G529E 0.15 deleterious(0.01) benign(0.14) TCGA-DQ-5625-01 19 9296835 9296835 C G OR7D2 Silent p.V126V 0.22 TCGA-DQ-5625-01 1 145301751 145301751 T A NBPF10 Missense_Mutation p.F340L 0.13 benign(0.006) TCGA-DQ-5625-01 1 150940939 150940939 G A CERS2 Missense_Mutation p.R75W 0.20 deleterious(0) probably_damaging(0.98) TCGA-DQ-5625-01 1 151774265 151774265 G A LINGO4 Missense_Mutation p.R306C 0.16 deleterious(0) possibly_damaging(0.871) TCGA-DQ-5625-01 1 152128885 152128885 C T RPTN Silent p.R230R 0.32 TCGA-DQ-5625-01 1 185815158 185815158 A T HMCN1 Missense_Mutation p.E90V 0.11 probably_damaging(0.987) TCGA-DQ-5625-01 1 186084057 186084057 C T HMCN1 Nonsense_Mutation p.R3795* 0.04 TCGA-DQ-5625-01 1 228109319 228109319 C T WNT9A Missense_Mutation p.R333Q 0.17 deleterious(0.05) possibly_damaging(0.591) TCGA-DQ-5625-01 1 235324512 235324512 C G RBM34 Missense_Mutation p.K10N 0.31 deleterious(0) benign(0.295) TCGA-DQ-5625-01 1 247752273 247752273 G A OR2G2 Silent p.V204V 0.19 TCGA-DQ-5625-01 1 26161639 26161639 G C AUNIP Missense_Mutation p.Q307E 0.49 deleterious(0.02) benign(0.388) TCGA-DQ-5625-01 1 33360939 33360939 C G TMEM54 Silent p.L187L 0.58 TCGA-DQ-5625-01 1 42047150 42047150 C T HIVEP3 Missense_Mutation p.D1107N 0.55 possibly_damaging(0.735) TCGA-DQ-5625-01 1 42048048 42048050 CTC TT HIVEP3 Frame_Shift_Del p.E807Kfs*53 0.39 TCGA-DQ-5625-01 1 52704848 52704848 C A ZFYVE9 Missense_Mutation p.L587I 0.55 deleterious(0.01) probably_damaging(0.997) TCGA-DQ-5625-01 1 55307366 55307366 G A C1orf177 Intron 0.45 TCGA-DQ-5625-01 21 33679117 33679117 G C MRAP Intron 0.27 TCGA-DQ-5625-01 21 35190747 35190747 C G ITSN1 Silent p.L968L 0.44 TCGA-DQ-5625-01 22 24035973 24035973 G A RGL4 Missense_Mutation p.E242K 0.18 deleterious(0) possibly_damaging(0.75) TCGA-DQ-5625-01 22 26343789 26343789 G C MYO18B Missense_Mutation p.A1915P 0.29 deleterious(0.01) probably_damaging(0.96) TCGA-DQ-5625-01 22 38131322 38131322 C G TRIOBP Missense_Mutation p.T1660S 0.26 deleterious_low_confidence(0.02) benign(0.272) TCGA-DQ-5625-01 22 46785346 46785346 C T CELSR1 Silent p.L2132L 0.20 TCGA-DQ-5625-01 22 50703900 50703900 G A MAPK11 Silent p.L289L 0.07 TCGA-DQ-5625-01 22 50886980 50886980 C G SBF1 Missense_Mutation p.D1715H 0.12 tolerated(0.05) possibly_damaging(0.745) TCGA-DQ-5625-01 2 10560208 10560208 G A HPCAL1 Missense_Mutation p.D109N 0.20 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 2 130878105 130878105 G C POTEF 5'UTR 0.28 TCGA-DQ-5625-01 2 141356336 141356336 T A LRP1B Missense_Mutation p.N2353I 0.21 possibly_damaging(0.904) TCGA-DQ-5625-01 2 152135393 152135393 G A NMI Missense_Mutation p.P97S 0.16 tolerated(0.1) benign(0.021) TCGA-DQ-5625-01 2 160623858 160623858 A G MARCH7 3'UTR 0.21 TCGA-DQ-5625-01 2 163167287 163167287 C G IFIH1 Missense_Mutation p.E204Q 0.30 tolerated(0.19) benign(0.04) TCGA-DQ-5625-01 2 175446073 175446073 G A WIPF1 Missense_Mutation p.T49M 0.22 deleterious(0) probably_damaging(0.97) TCGA-DQ-5625-01 2 179418418 179418418 C G TTN Missense_Mutation p.E29772Q 0.14 TCGA-DQ-5625-01 2 182347350 182347350 G T ITGA4 Missense_Mutation p.R338I 0.20 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 2 220334043 220334043 C T SPEG Silent p.I1219I 0.14 TCGA-DQ-5625-01 2 220336980 220336980 G A SPEG Silent p.P1289P 0.16 TCGA-DQ-5625-01 2 234526661 234526661 G A UGT1A8 Missense_Mutation p.R103Q 0.26 tolerated(0.63) benign(0.001) TCGA-DQ-5625-01 2 235949874 235949874 G A SH3BP4 Missense_Mutation p.R154K 0.18 tolerated(1) benign(0) TCGA-DQ-5625-01 2 241463486 241463486 G C ANKMY1 Missense_Mutation p.L461V 0.18 tolerated(0.43) benign(0.006) TCGA-DQ-5625-01 2 241702193 241702193 T A KIF1A Missense_Mutation p.M687L 0.21 tolerated(0.07) benign(0.015) TCGA-DQ-5625-01 2 31558759 31558760 - A XDH 3'UTR 0.14 TCGA-DQ-5625-01 2 32733227 32733227 C G BIRC6 Nonsense_Mutation p.S3294* 0.10 TCGA-DQ-5625-01 2 37227876 37227876 G C HEATR5B Missense_Mutation p.Q1800E 0.26 tolerated(0.92) benign(0.003) TCGA-DQ-5625-01 2 37443509 37443509 C G CEBPZ Missense_Mutation p.R754T 0.23 deleterious(0) probably_damaging(0.986) TCGA-DQ-5625-01 2 42671137 42671137 A G KCNG3 Silent p.Y416Y 0.20 TCGA-DQ-5625-01 2 87013059 87013059 G A CD8A Missense_Mutation p.S231L 0.23 deleterious(0.01) possibly_damaging(0.827) TCGA-DQ-5625-01 2 90199187 90199187 C A IGKV1D-12 Missense_Mutation p.F116L 0.10 tolerated(0.55) benign(0.001) TCGA-DQ-5625-01 3 111886130 111886130 A T SLC9C1 Missense_Mutation p.F1101Y 0.14 tolerated_low_confidence(0.14) benign(0.28) TCGA-DQ-5625-01 3 124462850 124462850 C T UMPS Silent p.I454I 0.33 TCGA-DQ-5625-01 3 124641076 124641076 A G MUC13 Missense_Mutation p.Y237H 0.15 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 3 12626379 12626379 C T RAF1 Silent p.K590K 0.26 TCGA-DQ-5625-01 3 130452474 130452474 G C PIK3R4 Missense_Mutation p.I456M 0.22 deleterious(0.01) benign(0.125) TCGA-DQ-5625-01 3 13368824 13368824 G A NUP210 Missense_Mutation p.S1467L 0.20 deleterious(0.04) benign(0.001) TCGA-DQ-5625-01 3 141644547 141644547 G A ATP1B3 3'UTR 0.26 TCGA-DQ-5625-01 3 151155070 151155070 C A IGSF10 Nonsense_Mutation p.E2427* 0.15 TCGA-DQ-5625-01 3 154832894 154832894 G A MME Missense_Mutation p.R103H 0.20 deleterious(0.04) probably_damaging(0.983) TCGA-DQ-5625-01 3 169703609 169703609 A G SEC62 Missense_Mutation p.Y189C 0.18 deleterious(0) benign(0.023) TCGA-DQ-5625-01 3 195501148 195501148 G A MUC4 Silent p.G4324G 0.48 TCGA-DQ-5625-01 3 32030581 32030581 G A ZNF860 Missense_Mutation p.E4K 0.17 tolerated(0.08) benign(0.292) TCGA-DQ-5625-01 3 32758664 32758665 - T CNOT10 Frame_Shift_Ins p.Q288Pfs*9 0.14 TCGA-DQ-5625-01 3 47618627 47618627 C T CSPG5 Missense_Mutation p.E297K 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.524) TCGA-DQ-5625-01 3 47618876 47618876 C T CSPG5 Missense_Mutation p.E214K 0.22 deleterious_low_confidence(0) benign(0.254) TCGA-DQ-5625-01 3 47889747 47889747 C T DHX30 Silent p.S788S 0.22 TCGA-DQ-5625-01 3 49412864 49412864 C T RHOA Intron 0.18 TCGA-DQ-5625-01 3 49412905 49412905 C G RHOA Missense_Mutation p.E40Q 0.22 deleterious(0.04) possibly_damaging(0.534) TCGA-DQ-5625-01 3 52539121 52539121 C A STAB1 Silent p.R494R 0.21 TCGA-DQ-5625-01 3 57619070 57619070 C G DENND6A Missense_Mutation p.Q425H 0.22 tolerated(0.1) probably_damaging(0.947) TCGA-DQ-5625-01 3 64526789 64526789 T C ADAMTS9 Missense_Mutation p.T1835A 0.25 tolerated(0.48) benign(0.005) TCGA-DQ-5625-01 4 109783686 109783686 A C COL25A1 Missense_Mutation p.S390A 0.33 tolerated(0.83) benign(0.164) TCGA-DQ-5625-01 4 122740557 122740557 A T CCNA2 Silent p.P324P 0.05 TCGA-DQ-5625-01 4 141320051 141320051 C T CLGN Missense_Mutation p.E280K 0.14 deleterious(0) possibly_damaging(0.834) TCGA-DQ-5625-01 4 154197120 154197120 C T TRIM2 Silent p.P97P 0.15 TCGA-DQ-5625-01 4 174449933 174449933 C T HAND2 Missense_Mutation p.E170K 0.21 deleterious(0) benign(0.063) TCGA-DQ-5625-01 4 20711361 20711361 C G PACRGL Missense_Mutation p.L111V 0.16 tolerated(0.4) benign(0.173) TCGA-DQ-5625-01 4 30724333 30724333 C T PCDH7 Missense_Mutation p.A430V 0.10 tolerated(0.83) benign(0.203) TCGA-DQ-5625-01 4 39226542 39226542 A G WDR19 Silent p.Q506Q 0.21 TCGA-DQ-5625-01 4 66197845 66197845 C T EPHA5 Missense_Mutation p.V952I 0.11 tolerated(0.53) benign(0.034) TCGA-DQ-5625-01 4 74964583 74964583 G A CXCL2 Missense_Mutation p.H53Y 0.17 deleterious(0) possibly_damaging(0.463) TCGA-DQ-5625-01 4 88415749 88415749 G A SPARCL1 Missense_Mutation p.A68V 0.07 tolerated(0.12) benign(0.008) TCGA-DQ-5625-01 5 150512081 150512081 C T ANXA6 Missense_Mutation p.R231Q 0.29 tolerated(0.13) benign(0.23) TCGA-DQ-5625-01 5 31297509 31297509 G A CDH6 Missense_Mutation p.E213K 0.16 tolerated(1) benign(0.233) TCGA-DQ-5625-01 5 40681496 40681496 G C PTGER4 Missense_Mutation p.R134P 0.17 deleterious(0.01) benign(0.235) TCGA-DQ-5625-01 5 43503812 43503812 T G C5orf34 Missense_Mutation p.Y328S 0.18 tolerated(0.21) probably_damaging(0.971) TCGA-DQ-5625-01 5 67589592 67589592 A G PIK3R1 Missense_Mutation p.Y452C 0.29 deleterious(0) benign(0.222) TCGA-DQ-5625-01 5 88057031 88057031 C T MEF2C Intron 0.22 TCGA-DQ-5625-01 5 94043192 94043192 G A MCTP1 3'UTR 0.32 TCGA-DQ-5625-01 6 100841664 100841664 G A SIM1 Silent p.A423A 0.38 TCGA-DQ-5625-01 6 112017481 112017481 T A FYN Missense_Mutation p.K347N 0.33 tolerated(0.75) benign(0.405) TCGA-DQ-5625-01 6 1313378 1313378 G A FOXQ1 Missense_Mutation p.E147K 0.17 deleterious(0.02) possibly_damaging(0.695) TCGA-DQ-5625-01 6 13792146 13792146 C G MCUR1 Missense_Mutation p.E330Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-DQ-5625-01 6 28539642 28539642 T C SCAND3 3'UTR 0.25 TCGA-DQ-5625-01 6 31583847 31583847 G A AIF1 Intron 0.35 TCGA-DQ-5625-01 6 31855970 31855970 G C EHMT2 Silent p.V531V 0.42 TCGA-DQ-5625-01 6 43497022 43497022 T - XPO5 Intron 0.24 TCGA-DQ-5625-01 7 100551523 100551523 T A MUC3A Missense_Mutation p.S92T 0.26 tolerated(0.14) possibly_damaging(0.494) TCGA-DQ-5625-01 7 110762901 110762901 A - LRRN3 Frame_Shift_Del p.V27Wfs*32 0.32 TCGA-DQ-5625-01 7 129756398 129756398 G A KLHDC10 Missense_Mutation p.E123K 0.12 tolerated(0.1) possibly_damaging(0.747) TCGA-DQ-5625-01 7 131012684 131012684 C G MKLN1 Missense_Mutation p.A9G 0.19 tolerated_low_confidence(0.28) unknown(0) TCGA-DQ-5625-01 7 131189187 131189191 AGAAG - PODXL Frame_Shift_Del p.S519* 0.29 TCGA-DQ-5625-01 7 138764670 138764670 G C ZC3HAV1 Silent p.L339L 0.17 TCGA-DQ-5625-01 7 139833366 139833366 T A KDM7A Missense_Mutation p.K124M 0.15 deleterious(0) possibly_damaging(0.596) TCGA-DQ-5625-01 7 141795497 141795497 C T MGAM Missense_Mutation p.R1635W 0.30 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 7 147674977 147674977 C T CNTNAP2 Missense_Mutation p.S760L 0.30 deleterious(0.03) benign(0.046) TCGA-DQ-5625-01 7 23749994 23749994 T G STK31 Intron 0.13 TCGA-DQ-5625-01 7 29918639 29918639 A T WIPF3 Missense_Mutation p.N80Y 0.21 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-DQ-5625-01 7 4947088 4947088 T C MMD2 Missense_Mutation p.Y251C 0.09 deleterious(0) probably_damaging(0.997) TCGA-DQ-5625-01 7 55980391 55980391 A T MRPS17 Missense_Mutation p.D8V 0.42 tolerated_low_confidence(0.32) unknown(0) TCGA-DQ-5625-01 7 73771712 73771712 G A CLIP2 Missense_Mutation p.E374K 0.21 deleterious(0.02) probably_damaging(0.916) TCGA-DQ-5625-01 7 92123604 92123604 C G PEX1 Intron 0.17 TCGA-DQ-5625-01 8 124810426 124810426 C G FAM91A1 Missense_Mutation p.S503C 0.08 deleterious(0) probably_damaging(0.998) TCGA-DQ-5625-01 8 144992659 144992659 T A PLEC Missense_Mutation p.E3914V 0.22 probably_damaging(0.96) TCGA-DQ-5625-01 8 49986796 49986796 T C C8orf22 Missense_Mutation p.L46S 0.06 deleterious(0.02) benign(0.16) TCGA-DQ-5625-01 8 54866744 54866744 C A RGS20 Missense_Mutation p.F284L 0.14 deleterious(0) probably_damaging(0.945) TCGA-DQ-5625-01 8 57080731 57080731 T - PLAG1 Frame_Shift_Del p.N33Tfs*17 0.18 TCGA-DQ-5625-01 8 82357103 82357103 G C PMP2 Missense_Mutation p.F65L 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-DQ-5625-01 8 90955524 90955524 C T NBN Missense_Mutation p.R714Q 0.11 tolerated(0.1) benign(0.229) TCGA-DQ-5625-01 8 99441238 99441238 C T KCNS2 Missense_Mutation p.S344F 0.16 deleterious(0) probably_damaging(0.996) TCGA-DQ-5625-01 9 114820851 114820851 C T SUSD1 Missense_Mutation p.E656K 0.21 deleterious(0) probably_damaging(0.997) TCGA-DQ-5625-01 9 116811467 116811476 GCCGGCATGT - ZNF618 Frame_Shift_Del p.G537Ffs*8 0.11 TCGA-DQ-5625-01 9 131394439 131394439 C G SPTAN1 Missense_Mutation p.Q2266E 0.17 tolerated(0.39) benign(0.003) TCGA-DQ-5625-01 9 131395123 131395123 C G SPTAN1 Missense_Mutation p.F2399L 0.21 deleterious(0) benign(0) TCGA-DQ-5625-01 9 13223589 13223589 C T MPDZ Missense_Mutation p.E172K 0.13 tolerated(0.18) benign(0.227) TCGA-DQ-5625-01 9 133799178 133799178 C T FIBCD1 Missense_Mutation p.G268S 0.49 tolerated(0.06) probably_damaging(0.968) TCGA-DQ-5625-01 9 139413087 139413087 T A NOTCH1 Missense_Mutation p.D352V 0.46 deleterious(0) probably_damaging(1) TCGA-DQ-5625-01 9 21409439 21409439 C G IFNA8 Missense_Mutation p.F88L 0.17 tolerated(0.32) benign(0.258) TCGA-DQ-5625-01 9 37776359 37776359 G C TRMT10B Missense_Mutation p.Q267H 0.39 tolerated(0.13) possibly_damaging(0.583) TCGA-DQ-5625-01 9 95014160 95014160 T C IARS Missense_Mutation p.N746S 0.16 tolerated(0.35) benign(0.001) TCGA-DQ-5625-01 X 102005206 102005206 T A BHLHB9 Missense_Mutation p.I428K 0.50 deleterious(0.01) possibly_damaging(0.791) TCGA-DQ-5625-01 X 102632819 102632819 C A NGFRAP1 3'UTR 0.34 TCGA-DQ-5625-01 X 139038002 139038002 A G CXorf66 3'UTR 0.22 TCGA-DQ-5625-01 X 16142062 16142062 A G GRPR 5'UTR 0.23 TCGA-DQ-5625-01 X 19398256 19398256 C T MAP3K15 Silent p.P857P 0.35 TCGA-DQ-5625-01 X 30269432 30269432 G A MAGEB1 Silent p.P274P 0.16 TCGA-DQ-5625-01 X 31950313 31950313 A G DMD Missense_Mutation p.F2216L 0.20 benign(0.294) TCGA-DQ-5625-01 X 38135929 38135929 C T TM4SF2 Intron 0.16 TCGA-DQ-5625-01 X 40988323 40988323 C T USP9X Missense_Mutation p.A56V 0.06 tolerated_low_confidence(0.22) benign(0.051) TCGA-DQ-5625-01 X 48370791 48370791 T A PORCN Missense_Mutation p.S151T 0.10 tolerated(0.12) benign(0.247) TCGA-DQ-5625-01 X 50213559 50213570 GGCGGAGCCGGT - DGKK RNA 0.23 TCGA-DQ-5625-01 X 53563587 53563589 CCA - HUWE1 In_Frame_Del p.G4060del 0.33 TCGA-DQ-5625-01 X 76944323 76944323 A T ATRX Silent p.V194V 0.34 TCGA-DQ-5625-01 X 9862972 9862972 G C SHROOM2 Missense_Mutation p.E342Q 0.17 deleterious(0.01) possibly_damaging(0.857) TCGA-DQ-5629-01 10 101510142 101510142 T C CUTC Missense_Mutation p.V197A 0.32 deleterious(0.04) benign(0.031) TCGA-DQ-5629-01 10 115392938 115392938 G A NRAP Missense_Mutation p.R513C 0.25 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 10 117026300 117026300 C A ATRNL1 Missense_Mutation p.S600Y 0.40 deleterious(0) probably_damaging(0.995) TCGA-DQ-5629-01 10 134008362 134008362 C T DPYSL4 Silent p.F109F 0.27 TCGA-DQ-5629-01 10 134041490 134041490 A G STK32C Missense_Mutation p.V154A 0.47 deleterious(0) probably_damaging(0.971) TCGA-DQ-5629-01 10 135084731 135084731 C T ADAM8 Silent p.A449A 0.31 TCGA-DQ-5629-01 10 17432614 17432614 T C ST8SIA6 Missense_Mutation p.Y69C 0.30 tolerated_low_confidence(0.11) possibly_damaging(0.613) TCGA-DQ-5629-01 10 25464376 25464376 C T GPR158 Silent p.L9L 0.42 TCGA-DQ-5629-01 10 26581417 26581417 T C GAD2 Silent p.H470H 0.36 TCGA-DQ-5629-01 10 48428899 48428899 C T GDF10 Silent p.R329R 0.31 TCGA-DQ-5629-01 10 50531202 50531202 C A C10orf71 Missense_Mutation p.N204K 0.25 tolerated(0.27) benign(0.311) TCGA-DQ-5629-01 10 51769796 51769796 G T AGAP6 Silent p.V637V 0.45 TCGA-DQ-5629-01 10 59956302 59956302 C T IPMK Silent p.Q262Q 0.30 TCGA-DQ-5629-01 10 60560767 60560767 C A BICC1 Missense_Mutation p.T659K 0.34 tolerated(0.13) benign(0.218) TCGA-DQ-5629-01 10 61012595 61012595 G T FAM13C Missense_Mutation p.P499Q 0.37 tolerated(0.41) possibly_damaging(0.867) TCGA-DQ-5629-01 10 7708844 7708844 C A ITIH5 Silent p.L4L 0.24 TCGA-DQ-5629-01 10 97917430 97917430 G A ZNF518A RNA 0.23 TCGA-DQ-5629-01 10 98741349 98741372 CGCCAGGATTTAGAGGCAAATGAA - C10orf12 In_Frame_Del p.R68_E75del 0.29 TCGA-DQ-5629-01 10 99512906 99512906 C T ZFYVE27 Missense_Mutation p.R342W 0.33 deleterious(0) probably_damaging(0.963) TCGA-DQ-5629-01 11 104778324 104778324 C A RP11-693N9.2 RNA 0.43 TCGA-DQ-5629-01 11 1162107 1162107 G A MUC5AC Silent p.Q566Q 0.38 TCGA-DQ-5629-01 11 119050721 119050721 A T NLRX1 Missense_Mutation p.K664M 0.17 deleterious(0.02) possibly_damaging(0.728) TCGA-DQ-5629-01 11 122930365 122930365 G C HSPA8 Silent p.G312G 0.35 TCGA-DQ-5629-01 11 122944443 122944443 G C CLMP Silent p.P287P 0.17 TCGA-DQ-5629-01 11 124266520 124266520 G C OR8B3 Missense_Mutation p.S243C 0.19 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DQ-5629-01 11 124267068 124267068 G A OR8B3 Silent p.Y60Y 0.49 TCGA-DQ-5629-01 11 125525182 125525182 G C CHEK1 Silent p.V466V 0.31 TCGA-DQ-5629-01 11 17532004 17532004 A T USH1C Missense_Mutation p.L493H 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DQ-5629-01 11 2411680 2411680 C T CD81 Silent p.L35L 0.38 TCGA-DQ-5629-01 11 26529699 26529699 A T ANO3 Nonsense_Mutation p.K161* 0.19 TCGA-DQ-5629-01 11 47653242 47653242 G C MTCH2 Missense_Mutation p.R131G 0.24 deleterious(0) possibly_damaging(0.878) TCGA-DQ-5629-01 11 55563127 55563127 G A OR5D14 Silent p.V32V 0.16 TCGA-DQ-5629-01 11 55872956 55872956 T G OR8H2 Silent p.T146T 0.39 TCGA-DQ-5629-01 11 55873223 55873223 G C OR8H2 Missense_Mutation p.Q235H 0.48 tolerated(0.34) benign(0.022) TCGA-DQ-5629-01 11 58604861 58604861 C T GLYATL2 Missense_Mutation p.D66N 0.11 tolerated(0.07) benign(0.02) TCGA-DQ-5629-01 11 59271125 59271125 T A OR4D11 Missense_Mutation p.V26D 0.25 deleterious(0.02) benign(0.299) TCGA-DQ-5629-01 11 62434253 62434253 G A METTL12 Silent p.V151V 0.23 TCGA-DQ-5629-01 11 64359366 64359366 C G SLC22A12 Missense_Mutation p.T113R 0.24 deleterious(0.03) benign(0.138) TCGA-DQ-5629-01 11 64795103 64795103 G C SNX15 Missense_Mutation p.A32P 0.28 deleterious(0) probably_damaging(0.979) TCGA-DQ-5629-01 11 70318824 70318824 G C SHANK2 3'UTR 0.40 TCGA-DQ-5629-01 11 9182329 9182329 C T DENND5A Silent p.E789E 0.34 TCGA-DQ-5629-01 12 130847589 130847589 G A PIWIL1 Missense_Mutation p.V699M 0.15 deleterious(0) probably_damaging(0.957) TCGA-DQ-5629-01 12 20864365 20864365 C A SLCO1C1 Missense_Mutation p.S150R 0.16 deleterious(0.01) benign(0.209) TCGA-DQ-5629-01 12 43944888 43944888 G T ADAMTS20 Missense_Mutation p.L93M 0.51 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 12 49229995 49229995 T C DDX23 Missense_Mutation p.I431V 0.27 tolerated(0.31) possibly_damaging(0.679) TCGA-DQ-5629-01 12 52979944 52979944 C A KRT72 Missense_Mutation p.S453I 0.46 deleterious(0.02) possibly_damaging(0.613) TCGA-DQ-5629-01 12 5541411 5541411 T G NTF3 5'UTR 0.68 TCGA-DQ-5629-01 12 55820894 55820894 T C OR6C76 Missense_Mutation p.I286T 0.55 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-DQ-5629-01 12 71978435 71978435 C T LGR5 Missense_Mutation p.P882L 0.49 tolerated(0.17) benign(0.01) TCGA-DQ-5629-01 12 7457112 7457112 G - ACSM4 Frame_Shift_Del p.W62Cfs*19 0.27 TCGA-DQ-5629-01 12 7559427 7559446 CTTAGTTCAAGATCACTACT - CD163L1 Frame_Shift_Del p.S257Afs*6 0.27 TCGA-DQ-5629-01 12 8327868 8327868 G C ZNF705A Missense_Mutation p.G62R 0.25 tolerated(0.07) probably_damaging(0.979) TCGA-DQ-5629-01 12 9318716 9318716 T C PZP Silent p.S730S 0.29 TCGA-DQ-5629-01 12 97303599 97303599 C G NEDD1 Missense_Mutation p.S28C 0.45 deleterious(0) probably_damaging(0.937) TCGA-DQ-5629-01 13 21212594 21212594 G A IFT88 Missense_Mutation p.A513T 0.58 tolerated(0.52) benign(0.121) TCGA-DQ-5629-01 13 38357101 38357101 C A TRPC4 Nonsense_Mutation p.E124* 0.56 TCGA-DQ-5629-01 13 45768826 45768826 T A KCTD4 5'UTR 0.35 TCGA-DQ-5629-01 13 46721147 46721147 C T LCP1 Missense_Mutation p.R357Q 0.10 tolerated(0.25) benign(0.37) TCGA-DQ-5629-01 13 52951683 52951683 C G THSD1 Missense_Mutation p.E808Q 0.48 deleterious(0.01) possibly_damaging(0.889) TCGA-DQ-5629-01 13 60737866 60737866 G A DIAPH3 Missense_Mutation p.A12V 0.58 tolerated_low_confidence(0.11) benign(0.031) TCGA-DQ-5629-01 13 70314562 70314562 G T KLHL1 Missense_Mutation p.A589D 0.37 deleterious(0.04) possibly_damaging(0.698) TCGA-DQ-5629-01 13 75898460 75898460 G A TBC1D4 Missense_Mutation p.S704F 0.43 tolerated(0.32) possibly_damaging(0.598) TCGA-DQ-5629-01 14 101198399 101198399 G A DLK1 Missense_Mutation p.A95T 0.46 tolerated(0.86) benign(0.002) TCGA-DQ-5629-01 14 105477874 105477874 T A CDCA4 Silent p.P131P 0.32 TCGA-DQ-5629-01 14 106174285 106174285 C G IGHA1 Missense_Mutation p.K168N 0.36 tolerated(0.26) benign(0.382) TCGA-DQ-5629-01 14 20692620 20692620 G C OR11H6 Missense_Mutation p.G251A 0.61 deleterious(0) probably_damaging(0.988) TCGA-DQ-5629-01 14 21860343 21860343 A C CHD8 Intron 0.54 TCGA-DQ-5629-01 14 22321161 22321161 G T TRAV8-3 Nonsense_Mutation p.E107* 0.65 TCGA-DQ-5629-01 14 23887416 23887421 CACTTG AACTA MYH7 Splice_Site p.X1389_splice 0.63 TCGA-DQ-5629-01 14 34269385 34269385 C A NPAS3 Silent p.G624G 0.71 TCGA-DQ-5629-01 14 35243604 35243604 C T BAZ1A Missense_Mutation p.E976K 0.17 deleterious(0) possibly_damaging(0.899) TCGA-DQ-5629-01 14 42356760 42356760 G T LRFN5 Missense_Mutation p.R311M 0.47 tolerated(0.1) benign(0.103) TCGA-DQ-5629-01 14 45537659 45537659 T A FAM179B Missense_Mutation p.D1541E 0.19 tolerated(0.29) possibly_damaging(0.747) TCGA-DQ-5629-01 14 47389219 47389219 C T MDGA2 Missense_Mutation p.R745K 0.28 tolerated(0.07) benign(0.009) TCGA-DQ-5629-01 14 51132094 51132094 G A SAV1 Missense_Mutation p.S113F 0.45 tolerated(0.07) possibly_damaging(0.77) TCGA-DQ-5629-01 14 52481978 52481978 G T NID2 Missense_Mutation p.P1015H 0.38 deleterious(0) probably_damaging(0.99) TCGA-DQ-5629-01 14 52509605 52509605 G C NID2 Missense_Mutation p.H492D 0.38 deleterious(0) probably_damaging(0.971) TCGA-DQ-5629-01 14 58598275 58598275 C A C14orf37 Missense_Mutation p.V596F 0.45 tolerated(0.05) possibly_damaging(0.607) TCGA-DQ-5629-01 14 59113678 59113678 C T DACT1 Silent p.S779S 0.21 TCGA-DQ-5629-01 14 67768785 67768785 G T MPP5 Nonsense_Mutation p.G251* 0.50 TCGA-DQ-5629-01 14 67768786 67768786 G T MPP5 Missense_Mutation p.G251V 0.49 tolerated(0.1) possibly_damaging(0.896) TCGA-DQ-5629-01 14 68192857 68192857 G A RDH12 Missense_Mutation p.G145R 0.46 deleterious(0) probably_damaging(0.977) TCGA-DQ-5629-01 14 70795900 70795900 C T COX16 Silent p.S65S 0.41 TCGA-DQ-5629-01 14 72431525 72431525 G A RGS6 Missense_Mutation p.G6E 0.26 tolerated_low_confidence(1) benign(0.027) TCGA-DQ-5629-01 14 79111601 79111601 C T NRXN3 5'UTR 0.12 TCGA-DQ-5629-01 14 79181346 79181346 G T NRXN3 Missense_Mutation p.K263N 0.57 tolerated(0.07) probably_damaging(0.966) TCGA-DQ-5629-01 14 88707125 88707125 C A KCNK10 Nonsense_Mutation p.G148* 0.24 TCGA-DQ-5629-01 14 91739649 91739649 G A CCDC88C Missense_Mutation p.R1803W 0.30 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 14 94391643 94391643 C A FAM181A Missense_Mutation p.S9Y 0.28 tolerated_low_confidence(0.1) benign(0.071) TCGA-DQ-5629-01 15 23890312 23890312 C A MAGEL2 Missense_Mutation p.A257S 0.23 tolerated(0.07) benign(0.079) TCGA-DQ-5629-01 15 24921822 24921822 T C NPAP1 Missense_Mutation p.S270P 0.50 tolerated(0.35) probably_damaging(0.99) TCGA-DQ-5629-01 15 24922763 24922763 A G NPAP1 Silent p.P583P 0.27 TCGA-DQ-5629-01 15 25438547 25438547 C A SNORD115-11 3'Flank 0.52 TCGA-DQ-5629-01 15 27159966 27159966 G T GABRA5 Nonsense_Mutation p.E172* 0.13 TCGA-DQ-5629-01 15 28090152 28090152 C G OCA2 Silent p.G795G 0.13 TCGA-DQ-5629-01 15 30919002 30919002 C G ARHGAP11B 5'UTR 0.19 TCGA-DQ-5629-01 15 48434324 48434324 G T SLC24A5 Nonsense_Mutation p.G427* 0.45 TCGA-DQ-5629-01 15 48634187 48634187 A T DUT Intron 0.21 TCGA-DQ-5629-01 15 48776017 48776017 A G FBN1 Missense_Mutation p.V1279A 0.24 benign(0.075) TCGA-DQ-5629-01 15 49833958 49833958 C A FAM227B Nonsense_Mutation p.E265* 0.20 TCGA-DQ-5629-01 15 49868948 49868948 T C FAM227B Missense_Mutation p.H179R 0.71 tolerated(0.15) benign(0.308) TCGA-DQ-5629-01 15 62182498 62182498 G A VPS13C Silent p.A3069A 0.14 TCGA-DQ-5629-01 15 65968863 65968863 G A DENND4A Missense_Mutation p.S1429F 0.59 deleterious(0.03) benign(0.002) TCGA-DQ-5629-01 15 81241181 81241181 C G KIAA1199 Missense_Mutation p.I1334M 0.27 deleterious(0.04) benign(0.104) TCGA-DQ-5629-01 15 88420304 88420304 G A NTRK3 Silent p.V794V 0.14 TCGA-DQ-5629-01 15 89382097 89382097 G T ACAN Missense_Mutation p.G92W 0.07 deleterious(0) unknown(0) TCGA-DQ-5629-01 15 89804006 89804006 C G FANCI Missense_Mutation p.Q74E 0.15 tolerated(0.48) benign(0.003) TCGA-DQ-5629-01 15 90020344 90020344 C T RHCG Silent p.L402L 0.24 TCGA-DQ-5629-01 15 90229763 90229763 G A PEX11A Missense_Mutation p.T24I 0.54 deleterious(0) possibly_damaging(0.892) TCGA-DQ-5629-01 15 91546342 91546342 G T VPS33B Nonsense_Mutation p.Y415* 0.55 TCGA-DQ-5629-01 16 11935671 11935671 C A RSL1D1 Nonsense_Mutation p.E246* 0.40 TCGA-DQ-5629-01 16 16177363 16177363 C T ABCC1 Silent p.I752I 0.14 TCGA-DQ-5629-01 16 20451218 20451218 G A ACSM5 Missense_Mutation p.A545T 0.28 deleterious(0) probably_damaging(0.973) TCGA-DQ-5629-01 16 27752188 27752188 C G KIAA0556 Nonsense_Mutation p.S857* 0.38 TCGA-DQ-5629-01 16 28967303 28967303 C G NFATC2IP Missense_Mutation p.L195V 0.27 tolerated(0.31) benign(0.059) TCGA-DQ-5629-01 16 30793202 30793202 C A ZNF629 Missense_Mutation p.G816V 0.49 deleterious(0.02) benign(0.033) TCGA-DQ-5629-01 16 31072519 31072519 C A ZNF668 Missense_Mutation p.C600F 0.20 deleterious(0) probably_damaging(0.994) TCGA-DQ-5629-01 16 46771856 46771856 C T MYLK3 Silent p.E256E 0.57 TCGA-DQ-5629-01 16 4797521 4797521 G C C16orf71 Missense_Mutation p.Q486H 0.47 tolerated(0.06) probably_damaging(0.986) TCGA-DQ-5629-01 16 55690666 55690666 T G SLC6A2 Silent p.G20G 0.17 TCGA-DQ-5629-01 16 58594184 58594184 G A CNOT1 Missense_Mutation p.P688S 0.39 tolerated(0.1) benign(0.052) TCGA-DQ-5629-01 16 58610398 58610398 G A CNOT1 Missense_Mutation p.S558F 0.14 deleterious(0) probably_damaging(0.99) TCGA-DQ-5629-01 16 70843905 70843905 C T HYDIN Silent p.T4888T 0.21 TCGA-DQ-5629-01 16 75276935 75276935 G A BCAR1 Silent p.L68L 0.52 TCGA-DQ-5629-01 16 88696916 88696916 G C ZC3H18 Missense_Mutation p.G864R 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DQ-5629-01 16 88706523 88706523 C A IL17C 3'UTR 0.34 TCGA-DQ-5629-01 17 10358338 10358338 T C MYH4 Silent p.L785L 0.27 TCGA-DQ-5629-01 17 17077275 17077275 G A MPRIP Silent p.E825E 0.26 TCGA-DQ-5629-01 17 26108077 26108077 G A NOS2 Silent p.N283N 0.27 TCGA-DQ-5629-01 17 27409400 27409400 G T MYO18A Missense_Mutation p.S1985Y 0.28 deleterious(0) probably_damaging(0.968) TCGA-DQ-5629-01 17 30358450 30358450 G T LRRC37B Missense_Mutation p.W650L 0.10 deleterious(0) possibly_damaging(0.876) TCGA-DQ-5629-01 17 47696729 47696729 G C SPOP Silent p.P73P 0.33 TCGA-DQ-5629-01 17 51902367 51902367 A T KIF2B Missense_Mutation p.K658I 0.36 deleterious(0) possibly_damaging(0.907) TCGA-DQ-5629-01 17 71282653 71282653 C A CDC42EP4 5'UTR 0.50 TCGA-DQ-5629-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.61 deleterious(0) probably_damaging(0.997) TCGA-DQ-5629-01 17 77921571 77921571 G A TBC1D16 Missense_Mutation p.S534L 0.81 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 17 80789871 80789872 - T ZNF750 Frame_Shift_Ins p.E154Rfs*68 0.47 TCGA-DQ-5629-01 17 8396258 8396258 C T MYH10 Missense_Mutation p.A1432T 0.63 benign(0) TCGA-DQ-5629-01 18 11999122 11999122 G A IMPA2 Missense_Mutation p.E56K 0.26 tolerated(0.14) possibly_damaging(0.624) TCGA-DQ-5629-01 18 33689681 33689681 T A SLC39A6 Missense_Mutation p.S715C 0.31 deleterious(0.04) benign(0.061) TCGA-DQ-5629-01 18 50731677 50731677 C A DCC Missense_Mutation p.N555K 0.32 tolerated(0.07) probably_damaging(0.919) TCGA-DQ-5629-01 19 1080350 1080350 T A HMHA1 Silent p.T616T 0.17 TCGA-DQ-5629-01 19 13060139 13060139 A T RAD23A Missense_Mutation p.M244L 0.68 tolerated(0.07) benign(0.341) TCGA-DQ-5629-01 19 16528864 16528864 C A EPS15L1 Silent p.A334A 0.66 TCGA-DQ-5629-01 19 16962311 16962311 C T SIN3B Missense_Mutation p.P272L 0.18 deleterious(0) benign(0.017) TCGA-DQ-5629-01 19 17039991 17039991 G T CPAMD8 Missense_Mutation p.R1016S 0.57 tolerated(0.11) benign(0.316) TCGA-DQ-5629-01 19 17892276 17892276 C T FCHO1 Missense_Mutation p.P586S 0.64 tolerated(0.34) benign(0.132) TCGA-DQ-5629-01 19 36557244 36557244 C A WDR62 Missense_Mutation p.A159E 0.47 deleterious(0) probably_damaging(0.983) TCGA-DQ-5629-01 19 36884242 36884242 C A ZFP82 Missense_Mutation p.G334C 0.19 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 19 37382725 37382725 G A ZNF829 Missense_Mutation p.P404L 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-DQ-5629-01 19 37676276 37676276 A G ZNF585B Silent p.A721A 0.23 TCGA-DQ-5629-01 19 38893838 38893838 C T FAM98C Silent p.A15A 0.62 TCGA-DQ-5629-01 19 39322049 39322049 T A ECH1 Missense_Mutation p.S54C 0.34 deleterious(0.01) benign(0.254) TCGA-DQ-5629-01 19 40901621 40901621 C T PRX Missense_Mutation p.E880K 0.33 tolerated(0.16) possibly_damaging(0.486) TCGA-DQ-5629-01 19 41916759 41916759 G T BCKDHA Intron 0.40 TCGA-DQ-5629-01 19 44096234 44096234 C T IRGQ Missense_Mutation p.D606N 0.14 tolerated(0.32) benign(0.177) TCGA-DQ-5629-01 19 49484827 49484827 C A GYS1 Missense_Mutation p.V377L 0.60 deleterious(0.01) probably_damaging(0.996) TCGA-DQ-5629-01 19 50979384 50979384 C T FAM71E1 Intron 0.58 TCGA-DQ-5629-01 19 52519063 52519063 G A ZNF614 3'UTR 0.22 TCGA-DQ-5629-01 19 55087488 55087488 C A LILRA2 Missense_Mutation p.H389Q 0.34 tolerated(0.08) probably_damaging(0.997) TCGA-DQ-5629-01 19 55365375 55365375 A T KIR3DL2 Nonsense_Mutation p.K177* 0.17 TCGA-DQ-5629-01 19 55693084 55693084 T A PTPRH 3'UTR 0.28 TCGA-DQ-5629-01 19 56473475 56473475 A C NLRP8 Missense_Mutation p.L695F 0.33 tolerated(0.41) benign(0.002) TCGA-DQ-5629-01 19 57744010 57744010 C G AURKC Missense_Mutation p.Q133E 0.17 deleterious(0.01) possibly_damaging(0.591) TCGA-DQ-5629-01 19 9045667 9045667 G A MUC16 Silent p.A11988A 0.18 TCGA-DQ-5629-01 19 9492182 9492182 G C ZNF177 Missense_Mutation p.G392A 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-DQ-5629-01 1 100752670 100752670 G A RTCA Missense_Mutation p.A317T 0.07 deleterious(0.02) possibly_damaging(0.902) TCGA-DQ-5629-01 1 103449722 103449722 G T COL11A1 Missense_Mutation p.P843Q 0.42 unknown(0) TCGA-DQ-5629-01 1 103449723 103449723 G T COL11A1 Missense_Mutation p.P843T 0.44 unknown(0) TCGA-DQ-5629-01 1 12016977 12016977 A T PLOD1 Missense_Mutation p.E216V 0.56 deleterious(0) probably_damaging(0.955) TCGA-DQ-5629-01 1 145273384 145273384 G T NOTCH2NL Missense_Mutation p.G80C 0.09 deleterious(0) probably_damaging(0.998) TCGA-DQ-5629-01 1 146057360 146057360 C G NBPF11 Missense_Mutation p.E84D 0.28 deleterious(0.02) probably_damaging(0.953) TCGA-DQ-5629-01 1 151641106 151641106 C T SNX27 Missense_Mutation p.H382Y 0.27 tolerated(1) possibly_damaging(0.572) TCGA-DQ-5629-01 1 153390678 153390678 C T S100A7A Silent p.F40F 0.46 TCGA-DQ-5629-01 1 158326571 158326571 G A CD1E Missense_Mutation p.G351E 0.43 tolerated(0.5) possibly_damaging(0.748) TCGA-DQ-5629-01 1 158641244 158641244 C A SPTA1 Splice_Site p.X497_splice 0.29 TCGA-DQ-5629-01 1 158669573 158669573 G T OR6K2 Silent p.I290I 0.41 TCGA-DQ-5629-01 1 161039369 161039369 G A ARHGAP30 Missense_Mutation p.R16W 0.35 deleterious(0) probably_damaging(0.996) TCGA-DQ-5629-01 1 165865540 165865540 C T UCK2 Missense_Mutation p.T157I 0.35 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 1 169391451 169391451 T A CCDC181 Missense_Mutation p.Q73L 0.54 deleterious(0.03) benign(0.047) TCGA-DQ-5629-01 1 169505920 169505920 T C F5 Splice_Site p.X1599_splice 0.37 TCGA-DQ-5629-01 1 172628386 172628386 G C FASLG Silent p.V15V 0.07 TCGA-DQ-5629-01 1 173157708 173157708 C G TNFSF4 Missense_Mutation p.V52L 0.15 deleterious(0.04) benign(0.048) TCGA-DQ-5629-01 1 175306678 175306678 C A TNR Missense_Mutation p.G1174W 0.40 deleterious(0) probably_damaging(0.992) TCGA-DQ-5629-01 1 176012927 176012927 C G RFWD2 Missense_Mutation p.K483N 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-DQ-5629-01 1 185939517 185939517 G T HMCN1 Nonsense_Mutation p.G755* 0.29 TCGA-DQ-5629-01 1 202121728 202121728 C T PTPN7 Missense_Mutation p.E378K 0.30 tolerated(0.09) probably_damaging(0.971) TCGA-DQ-5629-01 1 204236663 204236663 C G PLEKHA6 Missense_Mutation p.V74L 0.22 deleterious(0.05) benign(0.143) TCGA-DQ-5629-01 1 207095236 207095236 C A FAIM3 5'UTR 0.36 TCGA-DQ-5629-01 1 208062192 208062192 C G CD34 Splice_Site p.X270_splice 0.33 TCGA-DQ-5629-01 1 215794025 215794025 A T KCTD3 3'UTR 0.30 TCGA-DQ-5629-01 1 215953214 215953214 G A USH2A Missense_Mutation p.T3637I 0.46 benign(0.033) TCGA-DQ-5629-01 1 216040365 216040365 C A USH2A Silent p.V2943V 0.39 TCGA-DQ-5629-01 1 2160628 2160628 G C SKI Silent p.A141A 0.80 TCGA-DQ-5629-01 1 220156625 220156625 T A EPRS Missense_Mutation p.K1069M 0.43 deleterious(0) probably_damaging(0.978) TCGA-DQ-5629-01 1 230338962 230338962 C G GALNT2 Silent p.A100A 0.24 TCGA-DQ-5629-01 1 237580388 237580388 A T RYR2 Silent p.A271A 0.39 TCGA-DQ-5629-01 1 240256593 240256593 C T FMN2 Missense_Mutation p.A395V 0.55 unknown(0) TCGA-DQ-5629-01 1 240966253 240966253 C T RGS7 Missense_Mutation p.R437H 0.38 deleterious(0) probably_damaging(0.991) TCGA-DQ-5629-01 1 240975331 240975331 G T RGS7 Missense_Mutation p.S323R 0.38 deleterious(0.04) benign(0.12) TCGA-DQ-5629-01 1 247875907 247875907 T G OR6F1 Missense_Mutation p.T51P 0.33 tolerated(0.08) benign(0.013) TCGA-DQ-5629-01 1 34667770 34667770 C T C1orf94 Silent p.T452T 0.78 TCGA-DQ-5629-01 1 52499425 52499425 G A KTI12 Silent p.L3L 0.67 TCGA-DQ-5629-01 1 75626592 75626592 G T LHX8 3'UTR 0.63 TCGA-DQ-5629-01 1 79403504 79403504 A T ELTD1 Missense_Mutation p.S250T 0.54 tolerated(0.72) possibly_damaging(0.507) TCGA-DQ-5629-01 1 957724 957726 CTT TC AGRN Frame_Shift_Del p.F116Lfs*2 0.36 TCGA-DQ-5629-01 1 9775652 9775652 C T PIK3CD Silent p.P65P 0.34 TCGA-DQ-5629-01 20 13847353 13847353 C A SEL1L2 Missense_Mutation p.V467L 0.36 deleterious(0.02) possibly_damaging(0.812) TCGA-DQ-5629-01 20 13847424 13847424 G A SEL1L2 Missense_Mutation p.P443L 0.43 tolerated(0.21) probably_damaging(0.968) TCGA-DQ-5629-01 20 25456905 25456905 C A NINL Missense_Mutation p.G1008W 0.58 tolerated(0.24) benign(0.237) TCGA-DQ-5629-01 20 25596465 25596465 T A NANP 3'UTR 0.46 TCGA-DQ-5629-01 20 29960690 29960690 G C DEFB118 Missense_Mutation p.R30T 0.16 deleterious(0.01) benign(0.039) TCGA-DQ-5629-01 20 35422872 35422872 C A SOGA1 Missense_Mutation p.G1205W 0.46 tolerated(0.2) possibly_damaging(0.525) TCGA-DQ-5629-01 20 36869128 36869128 G T KIAA1755 Missense_Mutation p.P469T 0.27 tolerated(0.22) benign(0.075) TCGA-DQ-5629-01 20 48522917 48522917 G T SPATA2 Missense_Mutation p.L268M 0.43 deleterious(0.04) probably_damaging(0.91) TCGA-DQ-5629-01 20 49225879 49225879 G C FAM65C Missense_Mutation p.I193M 0.33 tolerated(0.33) benign(0.348) TCGA-DQ-5629-01 20 53227044 53227044 G C DOK5 Missense_Mutation p.Q239H 0.25 deleterious_low_confidence(0.03) benign(0.039) TCGA-DQ-5629-01 20 60584179 60584179 T A TAF4 Nonsense_Mutation p.K605* 0.41 TCGA-DQ-5629-01 20 62729191 62729191 C G OPRL1 Missense_Mutation p.I90M 0.26 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 20 62837126 62837126 G T MYT1 Nonsense_Mutation p.E124* 0.22 TCGA-DQ-5629-01 20 9525142 9525142 C A PAK7 Splice_Site p.X582_splice 0.22 TCGA-DQ-5629-01 22 18273802 18273802 C A MICAL3 Missense_Mutation p.R1929L 0.39 probably_damaging(0.999) TCGA-DQ-5629-01 22 20458180 20458180 T A RIMBP3 Missense_Mutation p.Y1041F 0.11 deleterious(0) probably_damaging(0.94) TCGA-DQ-5629-01 22 22843194 22843194 G C ZNF280B Missense_Mutation p.T177S 0.49 tolerated(0.15) benign(0.12) TCGA-DQ-5629-01 22 26040617 26040617 G A ADRBK2 Silent p.V83V 0.32 TCGA-DQ-5629-01 22 26860632 26860632 T C HPS4 Missense_Mutation p.R322G 0.19 tolerated(0.12) benign(0.108) TCGA-DQ-5629-01 2 112541901 112541901 T A ANAPC1 Missense_Mutation p.Q1665L 0.20 deleterious(0.01) benign(0.034) TCGA-DQ-5629-01 2 114500440 114500440 A G SLC35F5 Silent p.R193R 0.26 TCGA-DQ-5629-01 2 121995390 121995390 G A TFCP2L1 Silent p.P299P 0.35 TCGA-DQ-5629-01 2 132277805 132277805 A T AC093838.4 RNA 0.62 TCGA-DQ-5629-01 2 133721320 133721320 C T NCKAP5 Silent p.L184L 0.31 TCGA-DQ-5629-01 2 160035608 160035608 C T TANC1 Missense_Mutation p.P815L 0.41 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 2 163374347 163374347 C A KCNH7 Missense_Mutation p.R262I 0.43 tolerated(0.41) benign(0.124) TCGA-DQ-5629-01 2 163393462 163393462 G T KCNH7 Missense_Mutation p.P146T 0.38 tolerated(0.2) benign(0.002) TCGA-DQ-5629-01 2 169780147 169780147 T C ABCB11 Silent p.G1317G 0.25 TCGA-DQ-5629-01 2 176947080 176947080 G T EVX2 Missense_Mutation p.S175R 0.32 tolerated(0.09) possibly_damaging(0.52) TCGA-DQ-5629-01 2 178095440 178095440 T A NFE2L2 3'UTR 0.37 TCGA-DQ-5629-01 2 179466061 179466061 C T TTN Missense_Mutation p.A18555T 0.36 TCGA-DQ-5629-01 2 179578646 179578646 G T TTN Nonsense_Mutation p.C8913* 0.42 TCGA-DQ-5629-01 2 179587165 179587165 A T TTN Missense_Mutation p.V7450E 0.44 TCGA-DQ-5629-01 2 179611834 179611834 G A TTN Intron 0.38 TCGA-DQ-5629-01 2 179612195 179612195 T C TTN Intron 0.26 TCGA-DQ-5629-01 2 179613197 179613197 G A TTN Intron 0.34 TCGA-DQ-5629-01 2 179639115 179639115 T C TTN Silent p.P2292P 0.38 TCGA-DQ-5629-01 2 196891496 196891496 T A DNAH7 Missense_Mutation p.R219W 0.25 deleterious(0) possibly_damaging(0.514) TCGA-DQ-5629-01 2 212495206 212495206 C A ERBB4 Missense_Mutation p.R687I 0.23 deleterious(0) probably_damaging(0.943) TCGA-DQ-5629-01 2 228884000 228884000 C G SPHKAP Missense_Mutation p.V524L 0.63 tolerated(0.78) benign(0) TCGA-DQ-5629-01 2 28634831 28634831 T C FOSL2 Missense_Mutation p.L166P 0.05 deleterious(0) possibly_damaging(0.864) TCGA-DQ-5629-01 2 3469391 3469391 G C TRAPPC12 Silent p.A567A 0.44 TCGA-DQ-5629-01 2 58373570 58373570 G T VRK2 Missense_Mutation p.E381D 0.21 tolerated(0.11) benign(0.009) TCGA-DQ-5629-01 2 73718480 73718480 C T ALMS1 Missense_Mutation p.L3131F 0.36 probably_damaging(0.997) TCGA-DQ-5629-01 2 74691753 74691753 A C MOGS Missense_Mutation p.F150C 0.31 tolerated(0.11) possibly_damaging(0.852) TCGA-DQ-5629-01 2 75720630 75720630 C T EVA1A Missense_Mutation p.R64K 0.46 tolerated(0.37) benign(0.001) TCGA-DQ-5629-01 2 90249214 90249214 G T IGKV1D-43 Missense_Mutation p.W57L 0.20 deleterious(0.01) possibly_damaging(0.805) TCGA-DQ-5629-01 2 90249395 90249395 T A IGKV1D-43 Silent p.P117P 0.23 TCGA-DQ-5629-01 2 90260112 90260112 C G IGKV1D-8 Missense_Mutation p.A72G 0.43 tolerated(0.4) benign(0.002) TCGA-DQ-5629-01 2 96963242 96963242 C A SNRNP200 Missense_Mutation p.E412D 0.38 tolerated(0.61) benign(0.004) TCGA-DQ-5629-01 2 97869830 97869830 G C ANKRD36 Missense_Mutation p.L995F 0.22 tolerated_low_confidence(0.06) probably_damaging(0.995) TCGA-DQ-5629-01 3 101390839 101390839 T A ZBTB11 Nonsense_Mutation p.K177* 0.19 TCGA-DQ-5629-01 3 108335438 108335438 G A DZIP3 Silent p.L103L 0.23 TCGA-DQ-5629-01 3 121260261 121260261 G T POLQ Silent p.R137R 0.21 TCGA-DQ-5629-01 3 122629074 122629074 C A SEMA5B Silent p.T1178T 0.17 TCGA-DQ-5629-01 3 124048750 124048750 G A KALRN Missense_Mutation p.G441S 0.50 tolerated(0.84) possibly_damaging(0.548) TCGA-DQ-5629-01 3 126739087 126739087 A T PLXNA1 Missense_Mutation p.D1313V 0.34 deleterious(0) possibly_damaging(0.851) TCGA-DQ-5629-01 3 128202703 128202703 C T GATA2 Silent p.L339L 0.06 TCGA-DQ-5629-01 3 130405134 130405134 C T PIK3R4 Silent p.A1132A 0.36 TCGA-DQ-5629-01 3 138738793 138738793 C A PRR23B Silent p.P237P 0.41 TCGA-DQ-5629-01 3 147128846 147128846 C G ZIC1 Missense_Mutation p.S316C 0.49 deleterious(0) possibly_damaging(0.905) TCGA-DQ-5629-01 3 148459210 148459210 A T AGTR1 Missense_Mutation p.I130F 0.23 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 3 154860118 154860118 A T MME Missense_Mutation p.K396M 0.08 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 3 155200709 155200709 C A PLCH1 Missense_Mutation p.V1044L 0.19 tolerated_low_confidence(0.28) benign(0.002) TCGA-DQ-5629-01 3 155493562 155493562 G A C3orf33 Missense_Mutation p.R41C 0.25 tolerated(0.07) benign(0.031) TCGA-DQ-5629-01 3 170819288 170819288 C T TNIK Silent p.E847E 0.20 TCGA-DQ-5629-01 3 172163255 172163255 G C GHSR Missense_Mutation p.A266G 0.38 tolerated(0.11) benign(0.02) TCGA-DQ-5629-01 3 179103449 179103449 A T MFN1 Silent p.V585V 0.21 TCGA-DQ-5629-01 3 182841990 182841990 G T LAMP3 Nonsense_Mutation p.S377* 0.11 TCGA-DQ-5629-01 3 37034472 37034472 C A EPM2AIP1 Nonsense_Mutation p.E33* 0.62 TCGA-DQ-5629-01 3 45000811 45000811 G A ZDHHC3 Missense_Mutation p.R40C 0.54 deleterious(0.02) benign(0.033) TCGA-DQ-5629-01 3 46399015 46399015 C A CCR2 5'UTR 0.49 TCGA-DQ-5629-01 3 51399418 51399418 A T DOCK3 Missense_Mutation p.H1712L 0.64 tolerated_low_confidence(0.64) benign(0.055) TCGA-DQ-5629-01 3 52327209 52327209 G T GLYCTK 3'UTR 0.42 TCGA-DQ-5629-01 3 78701019 78701019 T A ROBO1 Missense_Mutation p.D892V 0.57 deleterious(0.01) possibly_damaging(0.69) TCGA-DQ-5629-01 3 85984983 85984983 C A CADM2 Missense_Mutation p.T249N 0.56 tolerated(0.12) benign(0.173) TCGA-DQ-5629-01 3 97596761 97596761 G T CRYBG3 Silent p.L293L 0.15 TCGA-DQ-5629-01 4 109738585 109738585 C T COL25A1 Missense_Mutation p.D644N 0.35 deleterious(0.01) probably_damaging(1) TCGA-DQ-5629-01 4 114274404 114274404 G C ANK2 Missense_Mutation p.E1544Q 0.21 probably_damaging(0.986) TCGA-DQ-5629-01 4 143045799 143045799 T G INPP4B Missense_Mutation p.Y612S 0.31 tolerated(0.6) benign(0.023) TCGA-DQ-5629-01 4 147561662 147561662 A G POU4F2 Missense_Mutation p.N311S 0.19 deleterious(0) probably_damaging(0.973) TCGA-DQ-5629-01 4 151504404 151504404 G A MAB21L2 Missense_Mutation p.E75K 0.32 deleterious(0) probably_damaging(0.96) TCGA-DQ-5629-01 4 155253699 155253699 C A DCHS2 Nonsense_Mutation p.G722* 0.16 TCGA-DQ-5629-01 4 156717623 156717623 T A GUCY1B3 Nonsense_Mutation p.L313* 0.32 TCGA-DQ-5629-01 4 169138107 169138107 A C DDX60 Missense_Mutation p.W1706G 0.33 tolerated(0.35) benign(0) TCGA-DQ-5629-01 4 169369891 169369891 C A DDX60L Missense_Mutation p.V346F 0.26 tolerated(0.1) benign(0.004) TCGA-DQ-5629-01 4 187534263 187534263 C T FAT1 Missense_Mutation p.G3155R 0.25 benign(0.424) TCGA-DQ-5629-01 4 187542674 187542675 - CC FAT1 Frame_Shift_Ins p.V1689Gfs*14 0.26 TCGA-DQ-5629-01 4 189060960 189060960 C A TRIML1 Missense_Mutation p.S83Y 0.19 deleterious(0) possibly_damaging(0.701) TCGA-DQ-5629-01 4 48152891 48152891 G C TEC Silent p.T287T 0.18 TCGA-DQ-5629-01 4 48512142 48512142 C G FRYL Missense_Mutation p.K2776N 0.23 deleterious(0) probably_damaging(0.997) TCGA-DQ-5629-01 4 52861265 52861265 G A LRRC66 Silent p.S641S 0.06 TCGA-DQ-5629-01 4 69519769 69519769 G T UGT2B15 Silent p.V433V 0.05 TCGA-DQ-5629-01 4 70080094 70080094 A C UGT2B11 Missense_Mutation p.L116R 0.22 deleterious(0.04) possibly_damaging(0.653) TCGA-DQ-5629-01 4 71232543 71232543 C A SMR3A Silent p.S79S 0.37 TCGA-DQ-5629-01 4 845576 845576 C A GAK Missense_Mutation p.G1157V 0.52 deleterious(0.04) probably_damaging(0.999) TCGA-DQ-5629-01 5 102343267 102343267 G T PAM Silent p.R707R 0.27 TCGA-DQ-5629-01 5 110448824 110448824 A G WDR36 Missense_Mutation p.I646V 0.28 tolerated(0.36) benign(0.007) TCGA-DQ-5629-01 5 11411728 11411728 C G CTNND2 Missense_Mutation p.G120A 0.64 tolerated(0.08) benign(0.17) TCGA-DQ-5629-01 5 118485227 118485227 G C DMXL1 Missense_Mutation p.M1235I 0.28 deleterious(0) probably_damaging(0.993) TCGA-DQ-5629-01 5 123982854 123982854 C A ZNF608 Missense_Mutation p.A1075S 0.24 tolerated(0.33) possibly_damaging(0.592) TCGA-DQ-5629-01 5 123982855 123982855 C A ZNF608 Silent p.L1074L 0.24 TCGA-DQ-5629-01 5 128351610 128351610 G - SLC27A6 Frame_Shift_Del p.A335Qfs*15 0.33 TCGA-DQ-5629-01 5 138654693 138654693 C T MATR3 Missense_Mutation p.H469Y 0.24 tolerated(1) probably_damaging(0.968) TCGA-DQ-5629-01 5 13900483 13900483 C T DNAH5 Silent p.L697L 0.10 TCGA-DQ-5629-01 5 140712201 140712201 C A PCDHGA1 Silent p.G650G 0.37 TCGA-DQ-5629-01 5 140751806 140751806 G T PCDHGB3 Silent p.G615G 0.30 TCGA-DQ-5629-01 5 140755543 140755543 C G PCDHGA6 Silent p.A631A 0.34 TCGA-DQ-5629-01 5 140764014 140764014 G C PCDHGA7 Silent p.A516A 0.30 TCGA-DQ-5629-01 5 140768373 140768373 G C PCDHGB4 Missense_Mutation p.E308Q 0.25 deleterious(0) probably_damaging(0.967) TCGA-DQ-5629-01 5 145648991 145648992 - T RBM27 Frame_Shift_Ins p.S846Ffs*34 0.23 TCGA-DQ-5629-01 5 145719943 145719943 T C POU4F3 Missense_Mutation p.V318A 0.24 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 5 161576255 161576255 C A GABRG2 Missense_Mutation p.T395N 0.21 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 5 167891755 167891755 C T WWC1 Missense_Mutation p.R986C 0.21 tolerated(0.07) possibly_damaging(0.84) TCGA-DQ-5629-01 5 168671713 168671713 G T SLIT3 Silent p.R113R 0.30 TCGA-DQ-5629-01 5 170818333 170818333 G A NPM1 Missense_Mutation p.D55N 0.42 deleterious(0.02) benign(0.326) TCGA-DQ-5629-01 5 176396024 176396024 G A UIMC1 Silent p.L244L 0.17 TCGA-DQ-5629-01 5 180053207 180053207 C T FLT4 Missense_Mutation p.E388K 0.22 deleterious(0.01) possibly_damaging(0.794) TCGA-DQ-5629-01 5 5146383 5146383 C A ADAMTS16 Missense_Mutation p.H106N 0.69 deleterious(0.01) benign(0.21) TCGA-DQ-5629-01 5 7698397 7698397 G A ADCY2 Missense_Mutation p.C340Y 0.19 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 5 86675667 86675667 C T RASA1 Missense_Mutation p.P868L 0.41 tolerated(0.44) probably_damaging(0.917) TCGA-DQ-5629-01 6 110746270 110746270 C T SLC22A16 Missense_Mutation p.A514T 0.36 tolerated(0.05) probably_damaging(0.964) TCGA-DQ-5629-01 6 112671163 112671163 C A RFPL4B Missense_Mutation p.H85N 0.43 deleterious(0.05) benign(0.014) TCGA-DQ-5629-01 6 114378425 114378425 G C HS3ST5 Missense_Mutation p.P346R 0.25 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 6 118887220 118887220 G C CEP85L Silent p.A167A 0.36 TCGA-DQ-5629-01 6 123759228 123759228 G C TRDN Missense_Mutation p.A344G 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.484) TCGA-DQ-5629-01 6 133065435 133065435 C T VNN2 3'UTR 0.30 TCGA-DQ-5629-01 6 133836456 133836456 C A EYA4 Intron 0.40 TCGA-DQ-5629-01 6 134210906 134210906 C T TCF21 Missense_Mutation p.A124V 0.20 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 6 135679271 135679271 G T AHI1 Missense_Mutation p.T1055K 0.18 tolerated(0.12) benign(0.007) TCGA-DQ-5629-01 6 139229952 139229952 C T REPS1 Missense_Mutation p.S689N 0.40 tolerated(0.29) benign(0.187) TCGA-DQ-5629-01 6 146625871 146625871 C A GRM1 Missense_Mutation p.L359M 0.34 tolerated(0.14) probably_damaging(0.971) TCGA-DQ-5629-01 6 151153189 151153189 G T PLEKHG1 Missense_Mutation p.R981L 0.33 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 6 152786476 152786476 G T SYNE1 Missense_Mutation p.R617S 0.33 benign(0.109) TCGA-DQ-5629-01 6 161007478 161007478 T C LPA Intron 0.42 TCGA-DQ-5629-01 6 166578115 166578115 G A T Silent p.S236S 0.35 TCGA-DQ-5629-01 6 167271702 167271702 C A RP11-514O12.4 Missense_Mutation p.D161Y 0.23 tolerated_low_confidence(0.19) benign(0.021) TCGA-DQ-5629-01 6 169629677 169629677 G T THBS2 Missense_Mutation p.T750N 0.09 tolerated(0.53) benign(0.017) TCGA-DQ-5629-01 6 25851036 25851036 C T SLC17A3 Nonsense_Mutation p.W261* 0.25 TCGA-DQ-5629-01 6 26108148 26108148 T A HIST1H1T Silent p.R58R 0.30 TCGA-DQ-5629-01 6 27101036 27101036 G A HIST1H2AG Silent p.E62E 0.33 TCGA-DQ-5629-01 6 33145004 33145004 T A COL11A2 Splice_Site p.X572_splice 0.40 TCGA-DQ-5629-01 6 39159097 39159097 C A KCNK5 Nonsense_Mutation p.E357* 0.19 TCGA-DQ-5629-01 6 39512286 39512286 C G KIF6 Intron 0.30 TCGA-DQ-5629-01 6 39843198 39843198 G T DAAM2 Missense_Mutation p.D419Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 6 54025221 54025221 A T MLIP Silent p.P247P 0.21 TCGA-DQ-5629-01 6 55192310 55192310 C T GFRAL 5'UTR 0.40 TCGA-DQ-5629-01 6 55223861 55223861 T A GFRAL Missense_Mutation p.C293S 0.32 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 6 55939064 55939064 C A COL21A1 Missense_Mutation p.G644V 0.35 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 6 56357099 56357099 G A DST Nonsense_Mutation p.R4272* 0.21 TCGA-DQ-5629-01 6 69703783 69703783 G T BAI3 Missense_Mutation p.V620L 0.43 tolerated(0.13) possibly_damaging(0.471) TCGA-DQ-5629-01 6 75806969 75806969 C T COL12A1 Silent p.P2859P 0.27 TCGA-DQ-5629-01 6 88229969 88229969 A T RARS2 Missense_Mutation p.D347E 0.35 tolerated(0.06) possibly_damaging(0.856) TCGA-DQ-5629-01 6 99850546 99850546 C T PNISR Silent p.E399E 0.31 TCGA-DQ-5629-01 7 116918348 116918348 G T WNT2 Missense_Mutation p.T315N 0.56 deleterious(0.01) probably_damaging(0.998) TCGA-DQ-5629-01 7 124387352 124387352 T A GPR37 Missense_Mutation p.I357L 0.15 deleterious(0.03) benign(0.43) TCGA-DQ-5629-01 7 126410105 126410105 C G GRM8 Missense_Mutation p.A391P 0.44 deleterious(0.04) benign(0.24) TCGA-DQ-5629-01 7 143792691 143792691 G T OR2A12 Missense_Mutation p.R164M 0.41 deleterious(0) possibly_damaging(0.863) TCGA-DQ-5629-01 7 146536965 146536965 G T CNTNAP2 Missense_Mutation p.W124L 0.37 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 7 147183129 147183129 C A CNTNAP2 Missense_Mutation p.H591Q 0.30 deleterious(0) possibly_damaging(0.688) TCGA-DQ-5629-01 7 147869371 147869371 C A CNTNAP2 Silent p.I937I 0.32 TCGA-DQ-5629-01 7 151133382 151133382 G A CRYGN Silent p.F100F 0.33 TCGA-DQ-5629-01 7 20371492 20371492 A T ITGB8 Silent p.R21R 0.34 TCGA-DQ-5629-01 7 2752343 2752343 T C AMZ1 Missense_Mutation p.F443S 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DQ-5629-01 7 28995715 28995715 C G AC005013.5 5'Flank 0.22 TCGA-DQ-5629-01 7 30472736 30472736 A G NOD1 Missense_Mutation p.V894A 0.15 tolerated(0.5) benign(0.345) TCGA-DQ-5629-01 7 31142969 31142969 G T ADCYAP1R1 Missense_Mutation p.G417C 0.16 deleterious(0) probably_damaging(0.999) TCGA-DQ-5629-01 7 31378227 31378227 G A NEUROD6 Missense_Mutation p.P219L 0.34 tolerated(0.06) probably_damaging(0.975) TCGA-DQ-5629-01 7 48443311 48443311 C T ABCA13 Nonsense_Mutation p.Q3969* 0.53 TCGA-DQ-5629-01 7 64292626 64292626 A C ZNF138 3'Flank 0.27 TCGA-DQ-5629-01 7 72418828 72418828 G C POM121 Intron 0.67 TCGA-DQ-5629-01 7 73010505 73010505 A C MLXIPL Missense_Mutation p.L679R 0.17 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 7 7636045 7636045 G A MIOS Missense_Mutation p.C785Y 0.38 deleterious(0) probably_damaging(1) TCGA-DQ-5629-01 7 81579768 81579768 G T CACNA2D1 Silent p.I1072I 0.28 TCGA-DQ-5629-01 7 82785474 82785474 G C PCLO Missense_Mutation p.N161K 0.30 unknown(0) TCGA-DQ-5629-01 7 92732854 92732854 C T SAMD9 Missense_Mutation p.V853I 0.23 tolerated(0.22) benign(0.022) TCGA-DQ-5629-01 7 95664996 95664996 G A DYNC1I1 Silent p.T449T 0.27 TCGA-DQ-5629-01 8 103373366 103373366 G A UBR5 Missense_Mutation p.A59V 0.17 tolerated(0.07) benign(0.091) TCGA-DQ-5629-01 8 114389005 114389005 C A CSMD3 Intron 0.46 TCGA-DQ-5629-01 8 117866561 117866561 T A RAD21 Missense_Mutation p.M362L 0.19 tolerated(1) benign(0.011) TCGA-DQ-5629-01 8 144241658 144241658 C T LY6H 5'UTR 0.47 TCGA-DQ-5629-01 8 144378762 144378762 C A ZNF696 Missense_Mutation p.S306Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-DQ-5629-01 8 22056620 22056620 C T BMP1 Intron 0.16 TCGA-DQ-5629-01 8 27145527 27145527 G A TRIM35 Missense_Mutation p.S341L 0.14 tolerated(0.16) probably_damaging(0.991) TCGA-DQ-5629-01 8 27606107 27606107 T C CCDC25 Missense_Mutation p.M85V 0.13 tolerated(0.57) benign(0.007) TCGA-DQ-5629-01 8 33310959 33310959 T C FUT10 Missense_Mutation p.K51E 0.14 tolerated(0.4) benign(0.008) TCGA-DQ-5629-01 8 39873165 39873165 A T IDO2 3'UTR 0.14 TCGA-DQ-5629-01 8 42620299 42620299 G C CHRNA6 Missense_Mutation p.S43C 0.15 deleterious(0.02) benign(0.023) TCGA-DQ-5629-01 8 57025647 57025647 G C MOS Missense_Mutation p.L299V 0.29 tolerated(0.21) probably_damaging(0.948) TCGA-DQ-5629-01 8 77766927 77766927 C T ZFHX4 Silent p.C2590C 0.29 TCGA-DQ-5629-01 8 86047139 86047139 A T LRRCC1 Missense_Mutation p.I676F 0.24 tolerated(0.74) benign(0.002) TCGA-DQ-5629-01 8 88886220 88886220 C A DCAF4L2 5'UTR 0.15 TCGA-DQ-5629-01 9 112963437 112963437 C T C9orf152 Missense_Mutation p.G171R 0.18 tolerated(0.47) benign(0.003) TCGA-DQ-5629-01 9 125673995 125673995 G A ZBTB6 Silent p.C119C 0.18 TCGA-DQ-5629-01 9 128728233 128728233 G T PBX3 3'UTR 0.69 TCGA-DQ-5629-01 9 132565578 132565578 C T TOR1B Silent p.T29T 0.92 TCGA-DQ-5629-01 9 135205410 135205410 G A SETX Silent p.S525S 0.74 TCGA-DQ-5629-01 9 136030665 136030665 C T GBGT1 Missense_Mutation p.A87T 0.58 deleterious(0.02) probably_damaging(0.987) TCGA-DQ-5629-01 9 21970900 21970900 C A CDKN2A Splice_Site p.X153_splice 0.74 TCGA-DQ-5629-01 9 27949285 27949285 A G LINGO2 Missense_Mutation p.V462A 0.57 tolerated(0.05) possibly_damaging(0.849) TCGA-DQ-5629-01 9 32634220 32634220 G T TAF1L Missense_Mutation p.A453E 0.59 deleterious(0) possibly_damaging(0.682) TCGA-DQ-5629-01 9 34521615 34521615 A G ENHO Missense_Mutation p.W27R 0.15 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-DQ-5629-01 9 99489210 99489210 G T RP11-535M15.2 RNA 0.77 TCGA-DQ-5629-01 X 107310364 107310364 G A VSIG1 Missense_Mutation p.V174M 0.82 deleterious(0) probably_damaging(0.987) TCGA-DQ-5629-01 X 110495672 110495672 C A CAPN6 Missense_Mutation p.D188Y 0.71 deleterious(0) probably_damaging(0.988) TCGA-DQ-5629-01 X 132162254 132162254 C G USP26 5'UTR 0.75 TCGA-DQ-5629-01 X 134156557 134156557 G C FAM127C 5'UTR 0.81 TCGA-DQ-5629-01 X 135047142 135047142 C A MMGT1 3'UTR 0.74 TCGA-DQ-5629-01 X 155003585 155003585 C T SPRY3 Silent p.L18L 0.64 TCGA-DQ-5629-01 X 30745636 30745636 A T GK Missense_Mutation p.M540L 0.65 tolerated(0.42) benign(0.002) TCGA-DQ-5629-01 X 35969932 35969932 C T CXorf22 Nonsense_Mutation p.Q300* 0.38 TCGA-DQ-5629-01 X 54784495 54784495 G C ITIH6 Missense_Mutation p.S671C 0.19 deleterious(0) possibly_damaging(0.533) TCGA-DQ-5629-01 X 54784525 54784525 G C ITIH6 Nonsense_Mutation p.S661* 0.19 TCGA-DQ-5629-01 X 76938209 76938209 A T ATRX Missense_Mutation p.F847I 0.36 benign(0.008) TCGA-DQ-5629-01 X 85969660 85969661 - A DACH2 Frame_Shift_Ins p.N348Kfs*103 0.31 TCGA-DQ-5629-01 X 91131853 91131853 A T PCDH11X Missense_Mutation p.K205M 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-DQ-5630-01 10 115980379 115980379 G A TDRD1 Silent p.Q849Q 0.04 TCGA-DQ-5630-01 10 27539214 27539214 G C RP11-85G18.6 RNA 0.04 TCGA-DQ-5630-01 10 30336618 30336618 C T KIAA1462 Missense_Mutation p.G42S 0.12 deleterious(0.01) possibly_damaging(0.662) TCGA-DQ-5630-01 10 61836161 61836161 G A ANK3 Missense_Mutation p.S1493L 0.17 possibly_damaging(0.551) TCGA-DQ-5630-01 11 34515223 34515223 T C ELF5 Missense_Mutation p.Y63C 0.14 tolerated(0.06) probably_damaging(0.911) TCGA-DQ-5630-01 11 379925 379925 C T B4GALNT4 Missense_Mutation p.R850C 0.10 tolerated(0.06) unknown(0) TCGA-DQ-5630-01 11 55861330 55861330 C A OR8I2 Missense_Mutation p.L183I 0.11 tolerated(0.44) benign(0.118) TCGA-DQ-5630-01 11 5730360 5730360 C T TRIM22 Missense_Mutation p.R327C 0.09 tolerated(0.21) benign(0.001) TCGA-DQ-5630-01 11 93778850 93778850 T G HEPHL1 Nonsense_Mutation p.L61* 0.16 TCGA-DQ-5630-01 12 21926400 21926400 G A KCNJ8 Missense_Mutation p.R51C 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-DQ-5630-01 12 50822793 50822793 A G LARP4 Missense_Mutation p.N81S 0.11 tolerated(0.25) benign(0.034) TCGA-DQ-5630-01 12 76750470 76750470 T C OSBPL8 Missense_Mutation p.I825V 0.13 tolerated(0.61) benign(0) TCGA-DQ-5630-01 13 46732708 46732708 T A LCP1 Missense_Mutation p.I103F 0.23 tolerated(0.31) benign(0.005) TCGA-DQ-5630-01 14 36004166 36004166 C T INSM2 Silent p.V236V 0.25 TCGA-DQ-5630-01 14 90730032 90730032 G C PSMC1 Silent p.L102L 0.10 TCGA-DQ-5630-01 15 37184422 37184422 A G MEIS2 Silent p.S462S 0.13 TCGA-DQ-5630-01 15 51397319 51397319 C G TNFAIP8L3 Missense_Mutation p.E19Q 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.727) TCGA-DQ-5630-01 15 59186670 59186670 G A SLTM Missense_Mutation p.R447C 0.06 tolerated(0.19) unknown(0) TCGA-DQ-5630-01 15 78322394 78322394 T C TBC1D2B Missense_Mutation p.I268V 0.10 tolerated(0.31) benign(0) TCGA-DQ-5630-01 16 48303932 48303932 C G LONP2 Missense_Mutation p.L330V 0.16 tolerated(0.1) benign(0.395) TCGA-DQ-5630-01 16 71423777 71423777 C T CALB2 3'UTR 0.09 TCGA-DQ-5630-01 16 89735952 89735952 C T SPATA33 3'UTR 0.30 TCGA-DQ-5630-01 17 21730948 21730948 C T UBBP4 Silent p.L84L 0.09 TCGA-DQ-5630-01 17 7576868 7576886 TTCTCCATCCAGTGGTTTC - TP53 Frame_Shift_Del p.K320Nfs*19 0.19 TCGA-DQ-5630-01 17 7806800 7806800 C G CHD3 Missense_Mutation p.L1295V 0.29 benign(0.364) TCGA-DQ-5630-01 17 8526560 8526560 G C MYH10 Missense_Mutation p.A2G 0.07 benign(0.127) TCGA-DQ-5630-01 19 11759238 11759238 G A ZNF833P RNA 0.15 TCGA-DQ-5630-01 19 13423556 13423556 T C CACNA1A Missense_Mutation p.E532G 0.05 possibly_damaging(0.859) TCGA-DQ-5630-01 19 36353394 36353394 G T KIRREL2 Splice_Site p.X504_splice 0.12 TCGA-DQ-5630-01 19 54867583 54867583 C T LAIR1 Missense_Mutation p.D233N 0.18 tolerated(0.11) probably_damaging(0.956) TCGA-DQ-5630-01 19 55143590 55143590 G T LILRB1 Missense_Mutation p.S188I 0.12 tolerated(0.09) benign(0.019) TCGA-DQ-5630-01 19 7914195 7914195 C T EVI5L Silent p.I202I 0.07 TCGA-DQ-5630-01 1 109793507 109793507 G T CELSR2 Missense_Mutation p.R269L 0.12 tolerated(0.3) probably_damaging(0.965) TCGA-DQ-5630-01 1 109794913 109794915 GAT - CELSR2 In_Frame_Del p.D738del 0.19 TCGA-DQ-5630-01 1 109897024 109897024 G C SORT1 Missense_Mutation p.Q225E 0.06 tolerated(1) benign(0) TCGA-DQ-5630-01 1 152187542 152187542 T C HRNR Missense_Mutation p.H2188R 0.05 unknown(0) TCGA-DQ-5630-01 1 156770249 156770249 C T PRCC Silent p.F491F 0.12 TCGA-DQ-5630-01 1 176993768 176993768 A T ASTN1 Silent p.P407P 0.12 TCGA-DQ-5630-01 1 204115797 204115797 G A ETNK2 Missense_Mutation p.T205M 0.11 deleterious(0.01) benign(0.149) TCGA-DQ-5630-01 1 27088796 27088796 A C ARID1A Missense_Mutation p.Q802P 0.14 unknown(0) TCGA-DQ-5630-01 1 5947504 5947504 G A NPHP4 Missense_Mutation p.P776L 0.19 deleterious(0) possibly_damaging(0.794) TCGA-DQ-5630-01 1 91851392 91851392 C G HFM1 Splice_Site p.X165_splice 0.07 TCGA-DQ-5630-01 20 43378790 43378790 G C KCNK15 Missense_Mutation p.G102R 0.13 tolerated(0.23) possibly_damaging(0.823) TCGA-DQ-5630-01 20 45353758 45353758 T C SLC2A10 Missense_Mutation p.V28A 0.09 deleterious(0) possibly_damaging(0.572) TCGA-DQ-5630-01 22 41265050 41265050 G C XPNPEP3 Missense_Mutation p.E38Q 0.05 tolerated(0.53) benign(0.001) TCGA-DQ-5630-01 2 102642600 102642600 C T IL1R2 Silent p.Y305Y 0.09 TCGA-DQ-5630-01 2 162092030 162092031 - AC TANK 3'UTR 0.20 TCGA-DQ-5630-01 2 179585124 179585128 CAGAG - TTN Frame_Shift_Del p.S7788Qfs*14 0.13 TCGA-DQ-5630-01 2 203168128 203168128 A G NOP58 Missense_Mutation p.K520R 0.15 tolerated(0.15) benign(0.292) TCGA-DQ-5630-01 2 203764342 203764342 C G WDR12 Missense_Mutation p.E84Q 0.05 deleterious(0) probably_damaging(0.995) TCGA-DQ-5630-01 2 235949576 235949576 G A SH3BP4 Missense_Mutation p.G55R 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.784) TCGA-DQ-5630-01 2 236659046 236659046 G A AGAP1 Missense_Mutation p.R196K 0.20 deleterious(0.04) benign(0.027) TCGA-DQ-5630-01 2 85051178 85051178 C T TRABD2A Silent p.T362T 0.21 TCGA-DQ-5630-01 2 86258685 86258685 C T POLR1A Missense_Mutation p.R1449Q 0.13 tolerated(0.52) benign(0.003) TCGA-DQ-5630-01 3 119534276 119534276 C G NR1I2 Silent p.L387L 0.09 TCGA-DQ-5630-01 3 122411306 122411306 A G PARP14 Missense_Mutation p.I172V 0.16 tolerated(0.34) benign(0.007) TCGA-DQ-5630-01 3 133327412 133327412 C G TOPBP1 Missense_Mutation p.L1464F 0.07 deleterious(0) probably_damaging(0.923) TCGA-DQ-5630-01 3 133558358 133558358 A G RAB6B Silent p.A131A 0.16 TCGA-DQ-5630-01 3 157820662 157820662 C G SHOX2 Silent p.L144L 0.07 TCGA-DQ-5630-01 3 178928073 178928073 G A PIK3CA Missense_Mutation p.G451R 0.11 deleterious(0.04) probably_damaging(0.98) TCGA-DQ-5630-01 3 195517410 195517410 A G MUC4 Silent p.V347V 0.03 TCGA-DQ-5630-01 3 52380551 52380551 C T DNAH1 Missense_Mutation p.R574C 0.18 possibly_damaging(0.462) TCGA-DQ-5630-01 3 97806749 97806749 G A OR5AC2 Missense_Mutation p.A245T 0.10 deleterious(0.01) probably_damaging(0.957) TCGA-DQ-5630-01 4 123797546 123797546 G A FGF2 Silent p.L216L 0.09 TCGA-DQ-5630-01 4 187004157 187004157 C T TLR3 Silent p.G439G 0.21 TCGA-DQ-5630-01 4 4864702 4864702 G A MSX1 Silent p.P248P 0.14 TCGA-DQ-5630-01 6 131915244 131915244 A G MED23 Missense_Mutation p.V1076A 0.09 tolerated(0.34) benign(0.122) TCGA-DQ-5630-01 6 138576730 138576730 A G KIAA1244 Missense_Mutation p.T310A 0.10 deleterious(0.03) benign(0.002) TCGA-DQ-5630-01 6 144508521 144508521 G A STX11 Missense_Mutation p.V253I 0.11 tolerated(0.18) benign(0.006) TCGA-DQ-5630-01 6 160199708 160199708 G A ACAT2 Silent p.G347G 0.13 TCGA-DQ-5630-01 6 25726721 25726721 C T HIST1H2AA Missense_Mutation p.R12H 0.16 tolerated_low_confidence(0.09) unknown(0) TCGA-DQ-5630-01 6 26027283 26027283 C T HIST1H4B Silent p.V66V 0.06 TCGA-DQ-5630-01 6 56474052 56474052 C G DST Intron 0.04 TCGA-DQ-5630-01 6 78172633 78172633 G A HTR1B Missense_Mutation p.P163L 0.07 tolerated(0.2) benign(0.316) TCGA-DQ-5630-01 6 90578310 90578310 A T CASP8AP2 RNA 0.16 TCGA-DQ-5630-01 7 111368416 111368416 G A DOCK4 Nonsense_Mutation p.R1939* 0.11 TCGA-DQ-5630-01 7 121942271 121942271 G A FEZF1 Missense_Mutation p.P403L 0.14 tolerated(0.09) probably_damaging(0.984) TCGA-DQ-5630-01 7 31378675 31378675 C A NEUROD6 Nonsense_Mutation p.E70* 0.12 TCGA-DQ-5630-01 7 44100510 44100510 G C DBNL Missense_Mutation p.E439Q 0.15 deleterious(0.01) benign(0.139) TCGA-DQ-5630-01 7 87229508 87229508 T C ABCB1 Splice_Site 0.11 TCGA-DQ-5630-01 8 102589743 102589743 C T GRHL2 Silent p.D333D 0.08 TCGA-DQ-5630-01 8 52322037 52322037 G T PXDNL Missense_Mutation p.P716Q 0.29 tolerated(0.16) possibly_damaging(0.67) TCGA-DQ-5630-01 9 115818942 115818942 A C ZFP37 Missense_Mutation p.I9M 0.13 tolerated_low_confidence(0.08) benign(0.01) TCGA-DQ-5630-01 9 136917540 136917540 G A BRD3 Missense_Mutation p.P80L 0.07 deleterious(0) probably_damaging(0.991) TCGA-DQ-5630-01 9 32448924 32448924 G C ACO1 Missense_Mutation p.E801Q 0.06 deleterious(0) probably_damaging(0.997) TCGA-DQ-5630-01 9 32634244 32634244 G C TAF1L Missense_Mutation p.T445R 0.06 tolerated(0.54) benign(0.09) TCGA-DQ-5630-01 9 73736301 73736301 A T TRPM3 5'UTR 0.25 TCGA-DQ-5630-01 9 97218593 97218593 C G HIATL1 Missense_Mutation p.S367C 0.04 deleterious(0.01) probably_damaging(0.977) TCGA-DQ-5630-01 X 13801551 13801553 GTG - GPM6B In_Frame_Del p.T153del 0.28 TCGA-DQ-5631-01 10 101165514 101165514 T G GOT1 Missense_Mutation p.K214T 0.08 deleterious(0.02) possibly_damaging(0.625) TCGA-DQ-5631-01 10 102045960 102045960 G C BLOC1S2 Silent p.A22A 0.17 TCGA-DQ-5631-01 10 1046661 1046661 G A GTPBP4 Silent p.R233R 0.22 TCGA-DQ-5631-01 10 22048519 22048519 C T DNAJC1 Silent p.S392S 0.31 TCGA-DQ-5631-01 10 64416233 64416233 C T ZNF365 Nonsense_Mutation p.Q403* 0.21 TCGA-DQ-5631-01 11 111630634 111630634 C G PPP2R1B Missense_Mutation p.R194P 0.12 deleterious(0) probably_damaging(1) TCGA-DQ-5631-01 11 114271421 114271421 C G RBM7 Missense_Mutation p.R10G 0.20 deleterious(0.02) benign(0.007) TCGA-DQ-5631-01 11 18195018 18195018 A G MRGPRX4 Missense_Mutation p.D72G 0.15 deleterious(0) probably_damaging(0.965) TCGA-DQ-5631-01 11 5699528 5699528 G C TRIM5 Missense_Mutation p.S217C 0.19 deleterious(0) possibly_damaging(0.873) TCGA-DQ-5631-01 11 58477704 58477704 T C GLYAT Intron 0.32 TCGA-DQ-5631-01 11 61249785 61249785 C T PPP1R32 Missense_Mutation p.R38W 0.12 tolerated(0.11) probably_damaging(0.956) TCGA-DQ-5631-01 11 74977164 74977164 A C ARRB1 3'UTR 0.28 TCGA-DQ-5631-01 11 7530749 7530749 G C OLFML1 Missense_Mutation p.G180A 0.13 deleterious(0.01) probably_damaging(1) TCGA-DQ-5631-01 11 77378520 77378520 C T RSF1 Silent p.K1256K 0.05 TCGA-DQ-5631-01 11 77911847 77911847 C T USP35 Missense_Mutation p.A397V 0.12 tolerated(0.1) unknown(0) TCGA-DQ-5631-01 11 803327 803327 G A PIDD Silent p.L186L 0.30 TCGA-DQ-5631-01 11 92600371 92600371 G A FAT3 Silent p.S4041S 0.17 TCGA-DQ-5631-01 11 93803697 93803697 C T HEPHL1 Silent p.N407N 0.13 TCGA-DQ-5631-01 12 52282464 52282464 C A ANKRD33 Silent p.G86G 0.13 TCGA-DQ-5631-01 12 56494868 56494868 T C ERBB3 Silent p.S1075S 0.18 TCGA-DQ-5631-01 13 42830545 42830545 A G FHP1 RNA 0.07 TCGA-DQ-5631-01 13 72063173 72063173 G A DACH1 Missense_Mutation p.P562S 0.08 possibly_damaging(0.804) TCGA-DQ-5631-01 14 21795884 21795884 C A RPGRIP1 Missense_Mutation p.P938Q 0.20 tolerated(0.08) possibly_damaging(0.736) TCGA-DQ-5631-01 14 50585274 50585274 G C SOS2 Missense_Mutation p.P1263A 0.19 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-DQ-5631-01 14 50626720 50626720 G A SOS2 Silent p.I427I 0.36 TCGA-DQ-5631-01 14 96851943 96851943 C G GSKIP Silent p.L114L 0.35 TCGA-DQ-5631-01 15 45410265 45410265 G A DUOXA1 Missense_Mutation p.R332C 0.15 deleterious(0.01) benign(0) TCGA-DQ-5631-01 16 19553369 19553369 C G CCP110 Nonsense_Mutation p.S737* 0.27 TCGA-DQ-5631-01 16 2577775 2577775 G T AMDHD2 Silent p.G139G 0.32 TCGA-DQ-5631-01 16 3713334 3713334 C T TRAP1 Intron 0.12 TCGA-DQ-5631-01 16 50138923 50138923 G A HEATR3 Missense_Mutation p.R665Q 0.38 deleterious(0.04) probably_damaging(0.951) TCGA-DQ-5631-01 16 64981418 64981418 T C CDH11 3'UTR 0.18 TCGA-DQ-5631-01 16 84188262 84188262 G A DNAAF1 Missense_Mutation p.E145K 0.19 deleterious(0) possibly_damaging(0.559) TCGA-DQ-5631-01 17 10248886 10248886 C T MYH13 Missense_Mutation p.M437I 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-DQ-5631-01 17 10364306 10364306 G A MYH4 Silent p.A358A 0.24 TCGA-DQ-5631-01 17 18659468 18659468 G A FBXW10 Splice_Site p.X411_splice 0.23 TCGA-DQ-5631-01 17 40485969 40485969 A G STAT3 Missense_Mutation p.V299A 0.24 tolerated(0.46) benign(0.065) TCGA-DQ-5631-01 17 42452040 42452040 C A ITGA2B Missense_Mutation p.R977L 0.22 deleterious(0.02) benign(0.013) TCGA-DQ-5631-01 17 4856404 4856404 G - ENO3 Frame_Shift_Del 0.26 TCGA-DQ-5631-01 17 48685319 48685319 G A CACNA1G Silent p.E1548E 0.20 TCGA-DQ-5631-01 17 51902045 51902045 C A KIF2B Missense_Mutation p.H551N 0.31 tolerated(0.53) benign(0.017) TCGA-DQ-5631-01 17 57288727 57288727 C T SMG8 Missense_Mutation p.H439Y 0.29 tolerated(0.25) probably_damaging(0.943) TCGA-DQ-5631-01 17 7370078 7370078 C T ZBTB4 Missense_Mutation p.A15T 0.36 unknown(0) TCGA-DQ-5631-01 17 73748588 73748588 C T ITGB4 Silent p.F1346F 0.14 TCGA-DQ-5631-01 17 7574021 7574021 C A TP53 Nonsense_Mutation p.E336* 0.12 TCGA-DQ-5631-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.33 deleterious(0) probably_damaging(1) TCGA-DQ-5631-01 17 8110609 8110609 G A AURKB Missense_Mutation p.R95W 0.27 deleterious(0.01) possibly_damaging(0.714) TCGA-DQ-5631-01 17 8139420 8139420 C A CTC1 Missense_Mutation p.D345Y 0.11 deleterious(0.03) possibly_damaging(0.735) TCGA-DQ-5631-01 18 29205538 29205538 C G B4GALT6 3'UTR 0.20 TCGA-DQ-5631-01 18 54424102 54424102 G C WDR7 Missense_Mutation p.D760H 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-DQ-5631-01 18 64176256 64176256 G A CDH19 Missense_Mutation p.L602F 0.21 deleterious(0) possibly_damaging(0.814) TCGA-DQ-5631-01 19 19625929 19625929 C T TSSK6 Missense_Mutation p.R103H 0.24 tolerated(0.26) possibly_damaging(0.536) TCGA-DQ-5631-01 19 33647373 33647373 C T WDR88 Nonsense_Mutation p.R308* 0.23 TCGA-DQ-5631-01 19 50309485 50309485 G A AP2A1 Missense_Mutation p.R944Q 0.33 deleterious(0) probably_damaging(0.989) TCGA-DQ-5631-01 19 52034681 52034681 G A SIGLEC6 Missense_Mutation p.P54S 0.19 tolerated(1) benign(0.004) TCGA-DQ-5631-01 19 53959369 53959369 C T ZNF761 RNA 0.20 TCGA-DQ-5631-01 19 54466508 54466508 G A CACNG8 Missense_Mutation p.A38T 0.27 deleterious(0) probably_damaging(0.957) TCGA-DQ-5631-01 19 55106777 55106777 C T LILRA1 Missense_Mutation p.R191C 0.27 deleterious(0.03) benign(0.063) TCGA-DQ-5631-01 19 55450945 55450945 C T NLRP7 Silent p.T414T 0.13 TCGA-DQ-5631-01 19 9060890 9060890 A G MUC16 Silent p.P8852P 0.19 TCGA-DQ-5631-01 1 103444279 103444279 G A COL11A1 Silent p.G913G 0.14 TCGA-DQ-5631-01 1 120539889 120539893 GTGGT - NOTCH2 Frame_Shift_Del p.T160Cfs*19 0.11 TCGA-DQ-5631-01 1 152190959 152190959 C G HRNR Missense_Mutation p.G1049A 0.16 unknown(0) TCGA-DQ-5631-01 1 161596179 161596179 G C FCGR3B Silent p.L147L 0.11 TCGA-DQ-5631-01 1 193070317 193070317 G A GLRX2 Missense_Mutation p.S47L 0.22 deleterious(0) possibly_damaging(0.804) TCGA-DQ-5631-01 1 228111988 228111988 C T WNT9A Missense_Mutation p.D156N 0.24 tolerated(0.19) possibly_damaging(0.84) TCGA-DQ-5631-01 1 237670089 237670089 T C RYR2 Missense_Mutation p.I898T 0.18 probably_damaging(0.984) TCGA-DQ-5631-01 1 247473644 247473644 C T ZNF496 Missense_Mutation p.G256R 0.24 deleterious(0) probably_damaging(0.95) TCGA-DQ-5631-01 1 247587539 247587539 G T NLRP3 Missense_Mutation p.S265I 0.18 deleterious(0) probably_damaging(0.997) TCGA-DQ-5631-01 20 30053437 30053437 C T DEFB124 Missense_Mutation p.G30S 0.21 tolerated_low_confidence(0.12) probably_damaging(0.999) TCGA-DQ-5631-01 20 31021696 31021696 G - ASXL1 Frame_Shift_Del p.E566Sfs*137 0.19 TCGA-DQ-5631-01 20 44680470 44680470 C T SLC12A5 Missense_Mutation p.R803C 0.32 deleterious(0.02) possibly_damaging(0.836) TCGA-DQ-5631-01 20 61444556 61444556 C T OGFR Missense_Mutation p.A530V 0.20 tolerated(0.11) benign(0.018) TCGA-DQ-5631-01 21 28338153 28338153 G A ADAMTS5 Silent p.S186S 0.21 TCGA-DQ-5631-01 2 109408186 109408186 G A CCDC138 Missense_Mutation p.E108K 0.20 tolerated(0.19) benign(0) TCGA-DQ-5631-01 2 152543963 152543963 G C NEB Missense_Mutation p.H869Q 0.22 possibly_damaging(0.85) TCGA-DQ-5631-01 2 182423402 182423402 G A CERKL Silent p.S263S 0.34 TCGA-DQ-5631-01 2 183616459 183616459 C T DNAJC10 Nonsense_Mutation p.Q461* 0.19 TCGA-DQ-5631-01 2 210560329 210560329 G A MAP2 Silent p.L1145L 0.13 TCGA-DQ-5631-01 2 237374156 237374156 G A IQCA1 Silent p.I306I 0.26 TCGA-DQ-5631-01 2 33007733 33007733 G A TTC27 Missense_Mutation p.R607Q 0.23 tolerated(0.07) possibly_damaging(0.658) TCGA-DQ-5631-01 2 43804258 43804258 T G THADA Missense_Mutation p.T314P 0.25 deleterious(0.01) benign(0.342) TCGA-DQ-5631-01 3 48921543 48921543 T C SLC25A20 Silent p.L71L 0.35 TCGA-DQ-5631-01 4 155507529 155507529 C A FGA Missense_Mutation p.S351I 0.36 deleterious_low_confidence(0.02) benign(0.348) TCGA-DQ-5631-01 4 187542861 187542861 G A FAT1 Nonsense_Mutation p.R1627* 0.41 TCGA-DQ-5631-01 4 40440734 40440734 C T RBM47 Silent p.P59P 0.19 TCGA-DQ-5631-01 4 46099293 46099293 G T GABRG1 Missense_Mutation p.H60N 0.10 tolerated(0.1) benign(0.34) TCGA-DQ-5631-01 4 6107634 6107634 G A JAKMIP1 Missense_Mutation p.R64W 0.23 deleterious(0) possibly_damaging(0.889) TCGA-DQ-5631-01 4 73148992 73148992 G A ADAMTS3 Missense_Mutation p.S1160L 0.05 deleterious_low_confidence(0.02) benign(0.196) TCGA-DQ-5631-01 5 140736077 140736077 A T PCDHGA4 Missense_Mutation p.H437L 0.38 tolerated_low_confidence(0.17) benign(0.098) TCGA-DQ-5631-01 5 169535116 169535116 G A FOXI1 Missense_Mutation p.R213H 0.36 deleterious(0) probably_damaging(0.956) TCGA-DQ-5631-01 5 39381673 39381673 C T DAB2 Missense_Mutation p.V463I 0.26 tolerated(0.55) benign(0) TCGA-DQ-5631-01 5 76645253 76645253 C T PDE8B Missense_Mutation p.P296S 0.59 deleterious(0) probably_damaging(1) TCGA-DQ-5631-01 6 27100329 27100329 C T HIST1H2BJ Silent p.V67V 0.25 TCGA-DQ-5631-01 6 52334164 52334164 G A EFHC1 Missense_Mutation p.E391K 0.21 deleterious(0) possibly_damaging(0.901) TCGA-DQ-5631-01 6 56334934 56334934 C T DST Missense_Mutation p.E4867K 0.18 probably_damaging(0.97) TCGA-DQ-5631-01 6 9939556 9939556 C G OFCC1 5'Flank 0.17 TCGA-DQ-5631-01 7 100684621 100684621 C A MUC17 Silent p.T3308T 0.28 TCGA-DQ-5631-01 7 1015201 1015201 G C COX19 5'UTR 0.33 TCGA-DQ-5631-01 7 140159671 140159671 G C MKRN1 Missense_Mutation p.S127C 0.28 tolerated(0.1) benign(0.011) TCGA-DQ-5631-01 7 150878272 150878272 G A ASB10 Silent p.D286D 0.17 TCGA-DQ-5631-01 7 73117214 73117214 G A STX1A Silent p.H213H 0.32 TCGA-DQ-5631-01 7 82543963 82543963 A T PCLO Intron 0.33 TCGA-DQ-5631-01 8 125740307 125740307 G C MTSS1 5'UTR 0.36 TCGA-DQ-5631-01 8 142146792 142146792 G A DENND3 Nonsense_Mutation p.W16* 0.08 TCGA-DQ-5631-01 8 144776477 144776477 G A ZNF707 Missense_Mutation p.R298Q 0.20 tolerated(0.09) probably_damaging(0.973) TCGA-DQ-5631-01 8 144893098 144893098 G A SCRIB Silent p.P417P 0.17 TCGA-DQ-5631-01 8 2876011 2876011 T A CSMD1 Missense_Mutation p.T2673S 0.55 probably_damaging(0.994) TCGA-DQ-5631-01 9 100843365 100843365 G T NANS Splice_Site p.X290_splice 0.27 TCGA-DQ-5631-01 9 131670491 131670491 A C LRRC8A Missense_Mutation p.K350Q 0.13 tolerated(0.26) benign(0.051) TCGA-DQ-5631-01 9 139412327 139412327 A G NOTCH1 Missense_Mutation p.C440R 0.24 deleterious(0) probably_damaging(0.997) TCGA-DQ-5631-01 X 134305034 134305034 C T CT55 Missense_Mutation p.R21Q 0.26 tolerated(0.26) benign(0) TCGA-DQ-5631-01 X 151896274 151896274 G A MAGEA12 3'Flank 0.54 TCGA-DQ-5631-01 X 16170776 16170776 C A GRPR 3'UTR 0.30 TCGA-DQ-5631-01 X 20082895 20082895 C T MAP7D2 Silent p.E53E 0.26 TCGA-DQ-5631-01 X 2998964 2998964 C T ARSF Nonsense_Mutation p.Q106* 0.61 TCGA-DQ-5631-01 X 3573309 3573309 G A PRKX Silent p.I160I 0.41 TCGA-DQ-5631-01 X 39934150 39934150 T C BCOR Missense_Mutation p.K150R 0.47 deleterious(0) probably_damaging(0.993) TCGA-DQ-5631-01 X 91090676 91090676 C A PCDH11X Missense_Mutation p.T58K 0.34 tolerated(0.22) benign(0.007) TCGA-DQ-7588-01 10 12856261 12856261 G A CAMK1D Missense_Mutation p.E237K 0.51 tolerated(0.2) benign(0.012) TCGA-DQ-7588-01 10 134261557 134261557 G A C10orf91 Missense_Mutation p.E144K 0.27 tolerated_low_confidence(0.11) benign(0) TCGA-DQ-7588-01 10 24762687 24762687 G A KIAA1217 Silent p.P459P 0.09 TCGA-DQ-7588-01 11 116693966 116693966 A G APOA4 5'UTR 0.80 TCGA-DQ-7588-01 11 11913622 11913622 C G USP47 Silent p.S87S 0.30 TCGA-DQ-7588-01 11 18636404 18636404 G C SPTY2D1 Missense_Mutation p.H473D 0.19 tolerated(0.49) possibly_damaging(0.507) TCGA-DQ-7588-01 11 2799262 2799262 G C KCNQ1 Missense_Mutation p.D597H 0.35 deleterious(0.02) probably_damaging(0.972) TCGA-DQ-7588-01 11 60702152 60702152 C T TMEM132A Silent p.H585H 0.50 TCGA-DQ-7588-01 11 62293458 62293458 T C AHNAK Missense_Mutation p.I2811V 0.12 benign(0.116) TCGA-DQ-7588-01 11 67412797 67412797 C T ACY3 Missense_Mutation p.E163K 0.19 tolerated(0.71) benign(0.021) TCGA-DQ-7588-01 11 6815960 6815960 A G OR6A2 Missense_Mutation p.V327A 0.41 deleterious_low_confidence(0.02) benign(0.001) TCGA-DQ-7588-01 11 7081185 7081185 C A NLRP14 Missense_Mutation p.H898Q 0.32 tolerated(0.42) benign(0.003) TCGA-DQ-7588-01 11 93483549 93483549 C A C11orf54 Silent p.V31V 0.56 TCGA-DQ-7588-01 12 11174444 11174444 G A TAS2R19 Silent p.L243L 0.24 TCGA-DQ-7588-01 12 116444184 116444184 A G MED13L Silent p.T757T 0.32 TCGA-DQ-7588-01 12 19501415 19501415 C A PLEKHA5 Nonsense_Mutation p.S994* 0.41 TCGA-DQ-7588-01 12 30787082 30787082 A - IPO8 Frame_Shift_Del p.F945Sfs*21 0.32 TCGA-DQ-7588-01 12 52699102 52699102 G C KRT86 Missense_Mutation p.D272H 0.38 deleterious(0.02) benign(0.037) TCGA-DQ-7588-01 12 56575309 56575309 G C SMARCC2 Missense_Mutation p.P305A 0.33 deleterious(0.02) possibly_damaging(0.539) TCGA-DQ-7588-01 12 59277366 59277366 T A LRIG3 Missense_Mutation p.S418C 0.33 deleterious(0) probably_damaging(0.995) TCGA-DQ-7588-01 12 81331433 81331433 G C LIN7A Silent p.L23L 0.47 TCGA-DQ-7588-01 14 106967121 106967121 C T IGHV1-46 Silent p.T93T 0.78 TCGA-DQ-7588-01 14 20852263 20852263 C T TEP1 Silent p.L1156L 0.45 TCGA-DQ-7588-01 14 23444271 23444271 G A AJUBA Nonsense_Mutation p.R428* 0.72 TCGA-DQ-7588-01 14 64519707 64519707 G C SYNE2 Missense_Mutation p.E3026Q 0.39 benign(0.223) TCGA-DQ-7588-01 14 64519931 64519931 G C SYNE2 Missense_Mutation p.E3100D 0.37 benign(0.05) TCGA-DQ-7588-01 15 25494356 25494356 G A SNORD115-43 RNA 0.12 TCGA-DQ-7588-01 15 41961802 41961802 C T MGA Missense_Mutation p.T237I 0.43 deleterious(0) probably_damaging(1) TCGA-DQ-7588-01 15 50733619 50733619 T G USP8 Missense_Mutation p.Y60D 0.34 deleterious(0) probably_damaging(1) TCGA-DQ-7588-01 15 96875682 96875682 C A NR2F2 Silent p.R116R 0.46 TCGA-DQ-7588-01 16 28992919 28992919 G A SPNS1 Silent p.L264L 0.37 TCGA-DQ-7588-01 16 30780713 30780713 G A RNF40 Silent p.K818K 0.36 TCGA-DQ-7588-01 16 56878497 56878497 G A NUP93 Silent p.V812V 0.34 TCGA-DQ-7588-01 16 74499652 74499652 T C GLG1 Silent p.V863V 0.26 TCGA-DQ-7588-01 17 10401226 10401226 A T MYH1 Missense_Mutation p.L1397Q 0.14 deleterious(0) probably_damaging(1) TCGA-DQ-7588-01 17 19843030 19843030 C T AKAP10 Missense_Mutation p.D440N 0.30 deleterious(0) possibly_damaging(0.815) TCGA-DQ-7588-01 17 4936879 4936880 - T SLC52A1 Frame_Shift_Ins p.S302Kfs*198 0.44 TCGA-DQ-7588-01 17 62892127 62892127 C A LRRC37A3 Missense_Mutation p.V417L 0.35 tolerated(0.61) benign(0.002) TCGA-DQ-7588-01 17 65050172 65050172 T A CACNG1 Missense_Mutation p.F97Y 0.41 tolerated(1) benign(0.268) TCGA-DQ-7588-01 17 67045471 67045471 G C ABCA9 Missense_Mutation p.T86S 0.39 tolerated(0.06) benign(0.213) TCGA-DQ-7588-01 17 7163558 7163558 T C CLDN7 3'UTR 0.21 TCGA-DQ-7588-01 17 72209806 72209806 T C TTYH2 Missense_Mutation p.L27P 0.45 deleterious(0) benign(0.208) TCGA-DQ-7588-01 17 74273270 74273270 T C QRICH2 Missense_Mutation p.T1581A 0.35 tolerated(0.57) benign(0.02) TCGA-DQ-7588-01 17 7578398 7578398 G - TP53 Frame_Shift_Del p.H178Tfs*69 0.35 TCGA-DQ-7588-01 17 76094475 76094475 C A TNRC6C Missense_Mutation p.T1489K 0.34 deleterious(0) probably_damaging(0.999) TCGA-DQ-7588-01 18 51851189 51851189 A T STARD6 Nonsense_Mutation p.L179* 0.36 TCGA-DQ-7588-01 19 10249209 10249209 G A DNMT1 Missense_Mutation p.P1341S 0.20 deleterious(0) possibly_damaging(0.675) TCGA-DQ-7588-01 19 10600446 10600446 C T KEAP1 Missense_Mutation p.R470H 0.39 tolerated(0.05) probably_damaging(0.951) TCGA-DQ-7588-01 19 11470232 11470232 C T DKFZP761J1410 Intron 0.39 TCGA-DQ-7588-01 19 19790752 19790752 C G ZNF101 Silent p.V318V 0.51 TCGA-DQ-7588-01 19 21477105 21477105 C T ZNF708 Silent p.E221E 0.16 TCGA-DQ-7588-01 19 22941528 22941528 T G ZNF99 Missense_Mutation p.K395Q 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-DQ-7588-01 19 38590721 38590721 C - SIPA1L3 Frame_Shift_Del p.H596Tfs*12 0.35 TCGA-DQ-7588-01 19 49379062 49379062 C G PPP1R15A Silent p.L619L 0.43 TCGA-DQ-7588-01 19 53644812 53644812 G A ZNF347 Silent p.H424H 0.45 TCGA-DQ-7588-01 19 54802685 54802685 G A LILRA3 Silent p.Y252Y 0.11 TCGA-DQ-7588-01 19 57132654 57132654 A G ZNF71 5'UTR 0.43 TCGA-DQ-7588-01 1 11186691 11186691 A T MTOR Missense_Mutation p.L2172M 0.40 tolerated(0.07) probably_damaging(0.963) TCGA-DQ-7588-01 1 149880767 149880767 A T SV2A Silent p.G452G 0.43 TCGA-DQ-7588-01 1 156028244 156028244 A G LAMTOR2 3'UTR 0.38 TCGA-DQ-7588-01 1 160267363 160267363 C T COPA Missense_Mutation p.R726H 0.27 tolerated(0.08) possibly_damaging(0.571) TCGA-DQ-7588-01 1 198713186 198713186 C T PTPRC Nonsense_Mutation p.Q901* 0.21 TCGA-DQ-7588-01 1 201981564 201981564 G T ELF3 Missense_Mutation p.D160Y 0.06 deleterious(0) possibly_damaging(0.867) TCGA-DQ-7588-01 1 202887508 202887508 G T KLHL12 Missense_Mutation p.Q120K 0.42 tolerated(0.27) benign(0.001) TCGA-DQ-7588-01 1 205308854 205308854 G T KLHDC8A Missense_Mutation p.D153E 0.24 deleterious(0.01) benign(0.17) TCGA-DQ-7588-01 1 214585062 214585062 G A PTPN14 Nonsense_Mutation p.Q159* 0.36 TCGA-DQ-7588-01 1 222803326 222803326 G C MIA3 Missense_Mutation p.D922H 0.11 tolerated(0.07) benign(0.025) TCGA-DQ-7588-01 1 23235659 23235659 C T EPHB2 Nonsense_Mutation p.Q834* 0.27 TCGA-DQ-7588-01 1 236646597 236646597 G T EDARADD 3'Flank 0.20 TCGA-DQ-7588-01 1 248059405 248059405 G T OR2W3 Nonsense_Mutation p.E173* 0.46 TCGA-DQ-7588-01 1 50642774 50642774 G T ELAVL4 Silent p.G105G 0.34 TCGA-DQ-7588-01 1 63005526 63005526 T A DOCK7 Missense_Mutation p.K997I 0.34 deleterious(0.01) possibly_damaging(0.771) TCGA-DQ-7588-01 1 89521862 89521862 G A GBP1 Missense_Mutation p.A402V 0.32 tolerated(0.15) probably_damaging(0.998) TCGA-DQ-7588-01 20 29847327 29847327 G C DEFB115 Missense_Mutation p.E53D 0.40 deleterious(0) possibly_damaging(0.866) TCGA-DQ-7588-01 20 3654911 3654911 C A ADAM33 Missense_Mutation p.R207S 0.24 tolerated(0.1) benign(0.007) TCGA-DQ-7588-01 20 39797452 39797452 G C PLCG1 Missense_Mutation p.E809Q 0.22 deleterious(0.02) probably_damaging(0.944) TCGA-DQ-7588-01 21 11026823 11026823 A G BAGE2 RNA 0.30 TCGA-DQ-7588-01 21 27348289 27348289 G A APP Missense_Mutation p.A426V 0.27 deleterious(0) possibly_damaging(0.603) TCGA-DQ-7588-01 21 34889435 34889435 G A GART Silent p.L656L 0.69 TCGA-DQ-7588-01 22 18022014 18022014 C T CECR2 Nonsense_Mutation p.Q707* 0.33 TCGA-DQ-7588-01 22 29627089 29627089 C A EMID1 Silent p.P182P 0.37 TCGA-DQ-7588-01 22 31737226 31737226 C T PATZ1 Intron 0.38 TCGA-DQ-7588-01 22 32889111 32889111 A G FBXO7 Silent p.V329V 0.30 TCGA-DQ-7588-01 2 137814025 137814025 G A THSD7B Missense_Mutation p.G59R 0.35 deleterious(0) probably_damaging(0.98) TCGA-DQ-7588-01 2 152311418 152311418 G A RIF1 Missense_Mutation p.R785K 0.15 tolerated(0.08) benign(0.005) TCGA-DQ-7588-01 2 172409921 172409921 G T CYBRD1 Missense_Mutation p.M156I 0.07 tolerated(0.15) possibly_damaging(0.877) TCGA-DQ-7588-01 2 183066183 183066183 C T PDE1A Missense_Mutation p.E386K 0.46 deleterious(0) possibly_damaging(0.566) TCGA-DQ-7588-01 2 197138837 197138837 T A HECW2 Missense_Mutation p.D1049V 0.47 tolerated(0.56) possibly_damaging(0.587) TCGA-DQ-7588-01 2 203817391 203817391 A G CARF Missense_Mutation p.N139S 0.44 tolerated_low_confidence(0.38) benign(0.009) TCGA-DQ-7588-01 2 26998435 26998435 G T SLC35F6 Silent p.L142L 0.20 TCGA-DQ-7588-01 2 27662654 27662654 C T NRBP1 Nonsense_Mutation p.Q309* 0.12 TCGA-DQ-7588-01 2 44104782 44104782 T A ABCG8 Nonsense_Mutation p.Y613* 0.54 TCGA-DQ-7588-01 2 44104784 44104784 A T ABCG8 Missense_Mutation p.K614I 0.53 tolerated(0.32) benign(0.011) TCGA-DQ-7588-01 2 73518918 73518918 G A EGR4 Silent p.H479H 0.28 TCGA-DQ-7588-01 2 89459376 89459376 G C IGKV6-21 Missense_Mutation p.I67M 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-DQ-7588-01 2 90109036 90109036 G A IGKV6D-41 Missense_Mutation p.E101K 0.27 deleterious(0.01) possibly_damaging(0.839) TCGA-DQ-7588-01 2 97514026 97514026 T C ANKRD39 3'UTR 0.28 TCGA-DQ-7588-01 3 111681154 111681154 C G PHLDB2 Missense_Mutation p.I1024M 0.25 tolerated(0.27) benign(0.186) TCGA-DQ-7588-01 3 124103785 124103785 C T KALRN Nonsense_Mutation p.R620* 0.35 TCGA-DQ-7588-01 3 138431123 138431123 A T PIK3CB Missense_Mutation p.N442K 0.23 deleterious(0) probably_damaging(0.99) TCGA-DQ-7588-01 3 145913053 145913053 C - PLSCR4 Frame_Shift_Del p.G268Afs*31 0.34 TCGA-DQ-7588-01 3 153840682 153840682 G T ARHGEF26 Missense_Mutation p.D301Y 0.31 deleterious(0.02) benign(0.048) TCGA-DQ-7588-01 3 38271893 38271893 C A OXSR1 Missense_Mutation p.A308E 0.47 tolerated(0.15) benign(0.027) TCGA-DQ-7588-01 4 164050333 164050333 T C NAF1 Missense_Mutation p.M401V 0.45 tolerated(0.59) benign(0.001) TCGA-DQ-7588-01 4 44684387 44684387 G A GUF1 Missense_Mutation p.A182T 0.24 deleterious(0) probably_damaging(0.914) TCGA-DQ-7588-01 4 57244333 57244333 G C AASDH Missense_Mutation p.P217A 0.39 deleterious(0.01) probably_damaging(1) TCGA-DQ-7588-01 4 78641683 78641683 G A CNOT6L Missense_Mutation p.H524Y 0.17 deleterious(0.03) possibly_damaging(0.723) TCGA-DQ-7588-01 4 94377080 94377080 C G GRID2 Missense_Mutation p.L605V 0.36 deleterious(0) probably_damaging(0.983) TCGA-DQ-7588-01 5 13900460 13900460 T A DNAH5 Missense_Mutation p.E705V 0.30 possibly_damaging(0.728) TCGA-DQ-7588-01 5 140176801 140176801 C G PCDHA2 Missense_Mutation p.S751W 0.36 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DQ-7588-01 5 156464353 156464353 C A HAVCR1 Missense_Mutation p.S286I 0.46 tolerated(0.12) possibly_damaging(0.537) TCGA-DQ-7588-01 5 179980420 179980420 C G CNOT6 Missense_Mutation p.L112V 0.17 deleterious(0) possibly_damaging(0.589) TCGA-DQ-7588-01 5 40765031 40765031 G A PRKAA1 Silent p.F392F 0.20 TCGA-DQ-7588-01 5 40765109 40765109 G A PRKAA1 Silent p.F366F 0.22 TCGA-DQ-7588-01 5 56777724 56777724 C G ACTBL2 Missense_Mutation p.E271Q 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.584) TCGA-DQ-7588-01 6 33180132 33180132 C T RING1 Missense_Mutation p.R393W 0.33 deleterious(0) unknown(0) TCGA-DQ-7588-01 6 3723816 3723816 G A PXDC1 3'UTR 0.26 TCGA-DQ-7588-01 6 43413617 43413617 A G ABCC10 Missense_Mutation p.Y1104C 0.32 deleterious(0) probably_damaging(0.999) TCGA-DQ-7588-01 6 55223758 55223758 C A GFRAL Nonsense_Mutation p.C258* 0.33 TCGA-DQ-7588-01 7 18688255 18688255 G C HDAC9 Missense_Mutation p.Q472H 0.40 tolerated(0.15) probably_damaging(0.999) TCGA-DQ-7588-01 7 26232879 26232879 T C HNRNPA2B1 Missense_Mutation p.Y331C 0.35 deleterious(0.01) benign(0.001) TCGA-DQ-7588-01 7 37955807 37955807 G A SFRP4 Silent p.L111L 0.35 TCGA-DQ-7588-01 7 83643661 83643661 T A SEMA3A Missense_Mutation p.K225M 0.48 deleterious(0) possibly_damaging(0.634) TCGA-DQ-7588-01 8 113871401 113871401 C G CSMD3 Missense_Mutation p.W576C 0.36 deleterious(0) probably_damaging(0.964) TCGA-DQ-7588-01 8 11412840 11412840 G C BLK Splice_Site p.X207_splice 0.37 TCGA-DQ-7588-01 8 118170016 118170016 C G SLC30A8 Missense_Mutation p.P169A 0.42 tolerated(0.32) possibly_damaging(0.619) TCGA-DQ-7588-01 8 144733676 144733676 G A ZNF623 3'UTR 0.36 TCGA-DQ-7588-01 8 20107757 20107757 G A LZTS1 Missense_Mutation p.R423W 0.35 deleterious(0) probably_damaging(0.999) TCGA-DQ-7588-01 8 22013886 22013889 GCCT - LGI3 Frame_Shift_Del p.K56Rfs*13 0.29 TCGA-DQ-7588-01 9 2101568 2101568 A G SMARCA2 Splice_Site p.X1027_splice 0.10 TCGA-DQ-7588-01 9 91926138 91926138 C G CKS2 5'UTR 0.75 TCGA-DQ-7588-01 X 108641866 108641866 A C GUCY2F Missense_Mutation p.F729L 0.70 tolerated(0.62) benign(0.258) TCGA-DQ-7588-01 X 147014272 147014272 G T FMR1 Missense_Mutation p.R290S 0.13 deleterious(0) probably_damaging(0.998) TCGA-DQ-7588-01 X 208211 208211 G A PLCXD1 Missense_Mutation p.E147K 0.27 deleterious(0) probably_damaging(0.996) TCGA-DQ-7591-01 10 63851924 63851924 C T ARID5B Missense_Mutation p.T901M 0.39 tolerated(0.08) possibly_damaging(0.513) TCGA-DQ-7591-01 10 78708933 78708933 C T KCNMA1 Silent p.T875T 0.04 TCGA-DQ-7591-01 10 97607265 97607265 C T ENTPD1 Silent p.N304N 0.35 TCGA-DQ-7591-01 11 17515858 17515858 G A USH1C 3'Flank 0.24 TCGA-DQ-7591-01 11 31616337 31616337 T A ELP4 Silent p.L134L 0.32 TCGA-DQ-7591-01 11 32955375 32955375 T A QSER1 Missense_Mutation p.D728E 0.35 tolerated(1) benign(0.036) TCGA-DQ-7591-01 11 34176283 34176283 C T ABTB2 Missense_Mutation p.E911K 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-DQ-7591-01 11 55578997 55578997 G A OR5L1 Missense_Mutation p.D19N 0.23 tolerated(0.11) possibly_damaging(0.682) TCGA-DQ-7591-01 11 89088181 89088181 G C NOX4 Missense_Mutation p.S389C 0.23 tolerated(0.07) possibly_damaging(0.759) TCGA-DQ-7591-01 12 133294060 133294060 G A PGAM5 Missense_Mutation p.A136T 0.08 tolerated(0.12) benign(0.13) TCGA-DQ-7591-01 12 247484 247484 G A IQSEC3 Missense_Mutation p.A319T 0.05 deleterious(0) probably_damaging(0.999) TCGA-DQ-7591-01 13 101997763 101997763 G T NALCN Missense_Mutation p.T218N 0.35 deleterious(0) possibly_damaging(0.848) TCGA-DQ-7591-01 14 24760085 24760100 GGGCAATAATCCACTT - DHRS1 Frame_Shift_Del p.K303Sfs*86 0.12 TCGA-DQ-7591-01 14 92336584 92336584 G A FBLN5 Missense_Mutation p.S444L 0.34 deleterious(0) probably_damaging(0.994) TCGA-DQ-7591-01 15 28375741 28375741 C T HERC2 Splice_Site p.X4191_splice 0.37 TCGA-DQ-7591-01 15 42133017 42133017 G T PLA2G4B Missense_Mutation p.D320Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-DQ-7591-01 15 57913836 57913836 C T MYZAP Nonsense_Mutation p.R117* 0.29 TCGA-DQ-7591-01 16 18856797 18856807 GGAGTCTTCAG - SMG1 Frame_Shift_Del p.L2055Ifs*14 0.30 TCGA-DQ-7591-01 16 3645643 3645643 G A SLX4 Missense_Mutation p.S659L 0.28 tolerated(0.11) benign(0.058) TCGA-DQ-7591-01 16 65032649 65032649 G A CDH11 Silent p.T113T 0.60 TCGA-DQ-7591-01 17 10448712 10448712 C T MYH2 Silent p.P152P 0.10 TCGA-DQ-7591-01 17 58233927 58233927 T C CA4 Missense_Mutation p.V40A 0.32 tolerated(0.75) benign(0.001) TCGA-DQ-7591-01 18 43319570 43319570 A G SLC14A1 Missense_Mutation p.M353V 0.38 tolerated(0.33) benign(0) TCGA-DQ-7591-01 18 47352828 47352828 G A MYO5B 3'UTR 0.40 TCGA-DQ-7591-01 18 55336473 55336473 A G ATP8B1 Intron 0.25 TCGA-DQ-7591-01 19 57175924 57175924 C T ZNF835 Missense_Mutation p.V215M 0.36 tolerated(0.06) benign(0.369) TCGA-DQ-7591-01 1 103405905 103405905 G C COL11A1 Missense_Mutation p.S1121C 0.34 unknown(0) TCGA-DQ-7591-01 1 161954641 161954641 T C OLFML2B Missense_Mutation p.Y535C 0.34 deleterious(0) probably_damaging(0.976) TCGA-DQ-7591-01 20 20506898 20506898 C T RALGAPA2 Missense_Mutation p.E1231K 0.39 deleterious(0.01) possibly_damaging(0.54) TCGA-DQ-7591-01 20 62730168 62730168 C T OPRL1 3'UTR 0.40 TCGA-DQ-7591-01 22 43524565 43524565 G A BIK Missense_Mutation p.M108I 0.28 tolerated(0.69) benign(0.001) TCGA-DQ-7591-01 2 166848284 166848284 G A SCN1A Missense_Mutation p.A1834V 0.40 deleterious(0) possibly_damaging(0.805) TCGA-DQ-7591-01 2 202700438 202700438 C T CDK15 Missense_Mutation p.P268L 0.35 deleterious(0) probably_damaging(1) TCGA-DQ-7591-01 2 210594941 210594941 T A MAP2 Silent p.A1768A 0.32 TCGA-DQ-7591-01 2 228009238 228009238 T A COL4A4 Silent p.V36V 0.28 TCGA-DQ-7591-01 2 29455179 29455179 C T ALK Missense_Mutation p.G875R 0.06 deleterious(0) probably_damaging(1) TCGA-DQ-7591-01 3 125166605 125166605 G A SNX4 3'UTR 0.31 TCGA-DQ-7591-01 3 185316239 185316239 C T SENP2 Missense_Mutation p.A66V 0.25 tolerated(0.96) probably_damaging(0.997) TCGA-DQ-7591-01 4 189064931 189064931 G A TRIML1 Intron 0.35 TCGA-DQ-7591-01 4 20597445 20597445 C T SLIT2 Missense_Mutation p.P1103L 0.35 deleterious(0.01) possibly_damaging(0.876) TCGA-DQ-7591-01 5 140250616 140250616 G A PCDHA11 Missense_Mutation p.R643H 0.32 deleterious_low_confidence(0.02) benign(0.24) TCGA-DQ-7591-01 5 150922619 150922619 T C FAT2 Missense_Mutation p.K2690R 0.42 benign(0.012) TCGA-DQ-7591-01 5 98233988 98233988 G T CHD1 Nonsense_Mutation p.S446* 0.21 TCGA-DQ-7591-01 6 31843626 31843626 C G SLC44A4 Intron 0.32 TCGA-DQ-7591-01 8 145139221 145139221 G A GPAA1 Silent p.T267T 0.28 TCGA-DQ-7591-01 8 145655883 145655883 G A TONSL Silent p.L1283L 0.30 TCGA-DQ-7591-01 8 42196204 42196204 G T POLB Splice_Site p.X21_splice 0.33 TCGA-DQ-7591-01 9 137005026 137005026 G C WDR5 Missense_Mutation p.E9D 0.29 tolerated(0.33) unknown(0) TCGA-DQ-7591-01 9 90501079 90501079 C T SPATA31E1 Silent p.V559V 0.08 TCGA-DQ-7592-01 10 115973760 115973760 T C TDRD1 Missense_Mutation p.V700A 0.23 tolerated(0.5) probably_damaging(0.932) TCGA-DQ-7592-01 10 75567374 75567374 C T NDST2 Missense_Mutation p.R258H 0.28 tolerated(0.23) benign(0.004) TCGA-DQ-7592-01 10 76780360 76780360 G C KAT6B Missense_Mutation p.E884Q 0.36 possibly_damaging(0.843) TCGA-DQ-7592-01 11 113141147 113141147 G A NCAM1 Intron 0.36 TCGA-DQ-7592-01 11 5905534 5905534 C G OR52E4 Missense_Mutation p.I4M 0.20 tolerated(0.24) benign(0.007) TCGA-DQ-7592-01 11 6008146 6008146 A G OR52L1 Silent p.S5S 0.11 TCGA-DQ-7592-01 11 66472445 66472445 G A SPTBN2 Missense_Mutation p.R768C 0.16 deleterious(0) possibly_damaging(0.817) TCGA-DQ-7592-01 11 67559935 67559935 G T FAM86C2P RNA 0.18 TCGA-DQ-7592-01 11 68846464 68846464 C T TPCN2 Silent p.D505D 0.07 TCGA-DQ-7592-01 11 7670885 7670885 G A PPFIBP2 Silent p.E707E 0.10 TCGA-DQ-7592-01 12 124335520 124335520 C T DNAH10 Missense_Mutation p.P1945L 0.40 probably_damaging(1) TCGA-DQ-7592-01 12 15636952 15636952 C T PTPRO Silent p.I40I 0.21 TCGA-DQ-7592-01 12 2717687 2717687 C T CACNA1C Missense_Mutation p.R1143C 0.20 deleterious(0) benign(0.412) TCGA-DQ-7592-01 12 60169147 60169147 T G SLC16A7 Silent p.V357V 0.20 TCGA-DQ-7592-01 12 6753666 6753666 T A ACRBP Missense_Mutation p.E194V 0.08 tolerated(0.07) benign(0.287) TCGA-DQ-7592-01 12 9334673 9334673 G A PZP Silent p.D529D 0.22 TCGA-DQ-7592-01 13 28589748 28589748 G A FLT3 Silent p.L878L 0.40 TCGA-DQ-7592-01 13 36050333 36050333 T G MAB21L1 5'UTR 0.20 TCGA-DQ-7592-01 13 46287473 46287473 C T SPERT Missense_Mutation p.R105C 0.34 deleterious(0) probably_damaging(0.921) TCGA-DQ-7592-01 13 53421570 53421570 G A PCDH8 Silent p.R334R 0.50 TCGA-DQ-7592-01 14 106174914 106174914 C T IGHA1 Missense_Mutation p.G30D 0.10 tolerated(0.51) benign(0.23) TCGA-DQ-7592-01 14 65453708 65453708 C T FNTB Missense_Mutation p.P13S 0.10 tolerated_low_confidence(0.15) benign(0.001) TCGA-DQ-7592-01 15 23931748 23931748 C G NDN Missense_Mutation p.R206T 0.09 tolerated(0.06) probably_damaging(0.999) TCGA-DQ-7592-01 15 31776457 31776457 C T OTUD7A Silent p.P607P 0.24 TCGA-DQ-7592-01 15 43826750 43826750 G A PPIP5K1 3'UTR 0.60 TCGA-DQ-7592-01 15 44944131 44944131 C A SPG11 Missense_Mutation p.W338C 0.14 deleterious(0.01) probably_damaging(0.982) TCGA-DQ-7592-01 15 78211410 78211410 C T RP11-114H24.7 Intron 0.29 TCGA-DQ-7592-01 16 15222109 15222109 C T RP11-1186N24.5 RNA 0.19 TCGA-DQ-7592-01 16 3801777 3801777 C G CREBBP Missense_Mutation p.E1243D 0.23 unknown(0) TCGA-DQ-7592-01 16 53730126 53730126 C T RPGRIP1L Missense_Mutation p.R56H 0.43 tolerated(0.07) probably_damaging(0.986) TCGA-DQ-7592-01 16 56309938 56309938 G A GNAO1 Missense_Mutation p.R86Q 0.29 tolerated(0.1) possibly_damaging(0.692) TCGA-DQ-7592-01 16 57953017 57953017 A G CNGB1 Missense_Mutation p.I648T 0.33 deleterious(0) probably_damaging(0.968) TCGA-DQ-7592-01 16 66969411 66969411 T C CES2 Missense_Mutation p.L22P 0.46 tolerated_low_confidence(0.35) benign(0) TCGA-DQ-7592-01 16 67267888 67267888 G T FHOD1 Nonsense_Mutation p.S573* 0.11 TCGA-DQ-7592-01 17 50212375 50212375 C T CA10 Intron 0.16 TCGA-DQ-7592-01 17 61950057 61950057 C T CSH2 Nonsense_Mutation p.W112* 0.10 TCGA-DQ-7592-01 17 7483866 7483866 C T CD68 Missense_Mutation p.S217L 0.10 deleterious(0.03) benign(0.152) TCGA-DQ-7592-01 17 7577575 7577575 A C TP53 Missense_Mutation p.Y236D 0.57 deleterious(0) probably_damaging(0.999) TCGA-DQ-7592-01 18 18629142 18629142 T C ROCK1 Missense_Mutation p.K109E 0.13 deleterious(0) probably_damaging(0.999) TCGA-DQ-7592-01 19 4446549 4446549 C A UBXN6 Missense_Mutation p.G290W 0.18 deleterious(0.01) possibly_damaging(0.566) TCGA-DQ-7592-01 19 45719340 45719340 G T EXOC3L2 Missense_Mutation p.P311Q 0.28 deleterious(0) probably_damaging(1) TCGA-DQ-7592-01 19 46915759 46915759 G A CCDC8 Silent p.S103S 0.12 TCGA-DQ-7592-01 19 46998417 46998417 G A PNMAL2 Silent p.V102V 0.13 TCGA-DQ-7592-01 19 54711225 54711225 C T RPS9 Intron 0.14 TCGA-DQ-7592-01 19 5700888 5700888 T C LONP1 Missense_Mutation p.Y473C 0.24 tolerated(0.18) benign(0.001) TCGA-DQ-7592-01 19 58131571 58131571 G A ZNF134 Silent p.Q28Q 0.40 TCGA-DQ-7592-01 1 212583778 212583778 C - TMEM206 Frame_Shift_Del p.G102Vfs*22 0.15 TCGA-DQ-7592-01 1 216258090 216258090 C T USH2A Nonsense_Mutation p.W1706* 0.12 TCGA-DQ-7592-01 1 223178344 223178344 G C DISP1 Missense_Mutation p.C1202S 0.17 tolerated(1) benign(0.066) TCGA-DQ-7592-01 1 22413014 22413014 A G CDC42 Silent p.P87P 0.47 TCGA-DQ-7592-01 1 243388581 243388581 A G CEP170 Translation_Start_Site p.M1? 0.23 deleterious(0) possibly_damaging(0.87) TCGA-DQ-7592-01 1 248790244 248790244 C T OR2T11 Silent p.Q62Q 0.23 TCGA-DQ-7592-01 1 248790246 248790246 G T OR2T11 Missense_Mutation p.Q62K 0.23 deleterious(0.01) possibly_damaging(0.809) TCGA-DQ-7592-01 1 34033207 34033207 G T CSMD2 Missense_Mutation p.T2766N 0.22 tolerated(0.54) possibly_damaging(0.876) TCGA-DQ-7592-01 1 52810541 52810541 C G ZFYVE9 Silent p.L1347L 0.30 TCGA-DQ-7592-01 1 67147692 67147692 T A SGIP1 Missense_Mutation p.S319T 0.31 deleterious_low_confidence(0.01) benign(0.225) TCGA-DQ-7592-01 1 90484343 90484343 G T ZNF326 Missense_Mutation p.G392C 0.20 deleterious(0) probably_damaging(0.999) TCGA-DQ-7592-01 20 36932638 36932638 C A BPI Missense_Mutation p.P9T 0.30 tolerated(0.12) benign(0.411) TCGA-DQ-7592-01 20 398533 398533 C G RBCK1 Missense_Mutation p.P140R 0.24 tolerated(1) benign(0.004) TCGA-DQ-7592-01 20 57769698 57769698 G A ZNF831 Silent p.A1208A 0.32 TCGA-DQ-7592-01 22 32784017 32784017 C T RTCB Missense_Mutation p.A494T 0.14 tolerated(0.11) benign(0.012) TCGA-DQ-7592-01 22 42605941 42605941 G A TCF20 Missense_Mutation p.R1791C 0.24 possibly_damaging(0.518) TCGA-DQ-7592-01 2 111666433 111666433 C T ACOXL Missense_Mutation p.R286W 0.15 deleterious(0.03) benign(0.098) TCGA-DQ-7592-01 2 178326624 178326624 A - AGPS Frame_Shift_Del p.E293Kfs*18 0.29 TCGA-DQ-7592-01 2 210559034 210559034 C G MAP2 Missense_Mutation p.L714V 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-DQ-7592-01 2 25803661 25803661 A C DTNB Missense_Mutation p.M213R 0.09 deleterious(0) benign(0.355) TCGA-DQ-7592-01 2 79386588 79386588 G A REG3A 5'UTR 0.18 TCGA-DQ-7592-01 3 107492402 107492402 G A BBX Missense_Mutation p.E612K 0.20 deleterious(0) probably_damaging(0.991) TCGA-DQ-7592-01 3 120053938 120053938 A C LRRC58 Nonsense_Mutation p.Y226* 0.15 TCGA-DQ-7592-01 3 120495328 120495328 G T GTF2E1 Nonsense_Mutation p.E237* 0.27 TCGA-DQ-7592-01 3 128181534 128181534 G A DNAJB8 Silent p.S185S 0.25 TCGA-DQ-7592-01 3 133119364 133119364 G T BFSP2 Missense_Mutation p.R146L 0.26 tolerated(0.23) benign(0.258) TCGA-DQ-7592-01 3 153905593 153905593 A T ARHGEF26 Missense_Mutation p.E536V 0.17 deleterious(0) probably_damaging(0.929) TCGA-DQ-7592-01 3 42906038 42906038 C T ACKR2 Missense_Mutation p.A15V 0.09 tolerated(0.48) benign(0.004) TCGA-DQ-7592-01 3 50144992 50144992 C T RBM5 Missense_Mutation p.S344L 0.41 deleterious(0.04) benign(0.009) TCGA-DQ-7592-01 4 187531028 187531029 - T FAT1 Frame_Shift_Ins p.T3332Nfs*15 0.29 TCGA-DQ-7592-01 4 3424168 3424168 C T RGS12 Silent p.L968L 0.37 TCGA-DQ-7592-01 4 70460413 70460413 T C UGT2A1 Silent p.G528G 0.20 TCGA-DQ-7592-01 4 9785061 9785061 C G DRD5 Missense_Mutation p.P470A 0.15 deleterious(0.02) possibly_damaging(0.899) TCGA-DQ-7592-01 5 10280584 10280584 C T CMBL Nonsense_Mutation p.W240* 0.08 TCGA-DQ-7592-01 5 114462268 114462268 C T TRIM36 Missense_Mutation p.G707S 0.30 deleterious(0) probably_damaging(1) TCGA-DQ-7592-01 5 140482640 140482640 T C PCDHB3 3'UTR 0.29 TCGA-DQ-7592-01 5 45262631 45262631 G - HCN1 Frame_Shift_Del p.Q689Sfs*91 0.12 TCGA-DQ-7592-01 6 131222184 131222184 T C EPB41L2 Missense_Mutation p.I356V 0.17 deleterious(0.04) benign(0.072) TCGA-DQ-7592-01 6 133070864 133070864 G A VNN2 Silent p.T447T 0.12 TCGA-DQ-7592-01 6 143793311 143793311 A G PEX3 Missense_Mutation p.H198R 0.50 deleterious(0.04) benign(0.124) TCGA-DQ-7592-01 6 27806706 27806706 C T HIST1H2BN Silent p.T89T 0.18 TCGA-DQ-7592-01 6 45882035 45882035 C T CLIC5 Missense_Mutation p.R332H 0.21 deleterious(0) probably_damaging(0.977) TCGA-DQ-7592-01 6 90529402 90529402 C T MDN1 5'UTR 0.15 TCGA-DQ-7592-01 6 99353453 99353453 G A FBXL4 Silent p.L318L 0.24 TCGA-DQ-7592-01 7 21934574 21934574 T G DNAH11 Missense_Mutation p.W4343G 0.12 probably_damaging(0.975) TCGA-DQ-7592-01 7 23306162 23306162 C T GPNMB Silent p.L361L 0.18 TCGA-DQ-7592-01 7 4874238 4874238 C T RADIL Nonsense_Mutation p.W472* 0.21 TCGA-DQ-7592-01 7 72754700 72754700 G A FKBP6 Missense_Mutation p.A217T 0.22 tolerated(0.09) benign(0.019) TCGA-DQ-7592-01 8 33371004 33371004 G T TTI2 5'UTR 0.17 TCGA-DQ-7592-01 8 88885018 88885018 G A DCAF4L2 Silent p.Y394Y 0.46 TCGA-DQ-7592-01 9 100000931 100000931 G C CCDC180 Intron 0.33 TCGA-DQ-7592-01 9 112705030 112705030 T C PALM2 Silent p.S187S 0.21 TCGA-DQ-7592-01 9 119976807 119976807 A T ASTN2 Missense_Mutation p.V282E 0.16 deleterious_low_confidence(0) unknown(0) TCGA-DQ-7592-01 9 131843487 131843487 G C DOLPP1 Splice_Site p.X26_splice 0.15 TCGA-DQ-7592-01 9 135271848 135271850 TCT - TTF1 In_Frame_Del p.K609del 0.21 TCGA-DQ-7592-01 9 26997861 26997861 C A LRRC19 Missense_Mutation p.G154C 0.29 tolerated(0.08) probably_damaging(0.935) TCGA-DQ-7592-01 9 73152300 73152300 C T TRPM3 Silent p.R1231R 0.11 TCGA-DQ-7592-01 X 79698533 79698533 C T FAM46D Silent p.L165L 0.33 TCGA-DQ-7593-01 10 122633434 122633437 AAGT - WDR11 Splice_Site p.X519_splice 0.28 TCGA-DQ-7593-01 10 98031155 98031155 T C BLNK Translation_Start_Site p.M1? 0.26 deleterious(0) possibly_damaging(0.649) TCGA-DQ-7593-01 11 2189347 2189347 C A TH Missense_Mutation p.D215Y 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-DQ-7593-01 11 60048157 60048157 G A MS4A4A Silent p.Q3Q 0.15 TCGA-DQ-7593-01 11 78285585 78285585 A C NARS2 5'UTR 0.25 TCGA-DQ-7593-01 12 101740295 101740295 T A UTP20 Missense_Mutation p.S1605T 0.20 tolerated(0.45) benign(0.083) TCGA-DQ-7593-01 12 49433051 49433051 G A KMT2D Missense_Mutation p.R2774W 0.18 probably_damaging(0.989) TCGA-DQ-7593-01 14 106845444 106845444 G A IGHV3-35 Missense_Mutation p.T77M 0.15 deleterious_low_confidence(0.03) benign(0.275) TCGA-DQ-7593-01 14 60074190 60074190 G A RTN1 Missense_Mutation p.R596W 0.09 deleterious(0) probably_damaging(1) TCGA-DQ-7593-01 15 74653864 74653864 C G CYP11A1 Intron 0.08 TCGA-DQ-7593-01 16 50830344 50830345 - GG CYLD Frame_Shift_Ins p.C934Afs*20 0.27 TCGA-DQ-7593-01 17 11666923 11666923 C A DNAH9 Missense_Mutation p.Q2388K 0.07 benign(0.036) TCGA-DQ-7593-01 19 19651098 19651098 C T CILP2 Silent p.Y83Y 0.17 TCGA-DQ-7593-01 1 1333700 1333700 T A CCNL2 Missense_Mutation p.H129L 0.10 tolerated(0.63) probably_damaging(0.991) TCGA-DQ-7593-01 1 1333701 1333701 G A CCNL2 Missense_Mutation p.H129Y 0.10 tolerated(1) possibly_damaging(0.818) TCGA-DQ-7593-01 1 222885629 222885629 G A AIDA Missense_Mutation p.R11C 0.11 deleterious(0) possibly_damaging(0.537) TCGA-DQ-7593-01 1 240255972 240255972 C T FMN2 Missense_Mutation p.S188L 0.13 unknown(0) TCGA-DQ-7593-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.15 probably_damaging(1) TCGA-DQ-7593-01 2 103274152 103274152 T C SLC9A2 Missense_Mutation p.V140A 0.14 tolerated(0.13) probably_damaging(0.975) TCGA-DQ-7593-01 2 179447931 179447931 C T TTN Missense_Mutation p.V21867M 0.19 TCGA-DQ-7593-01 2 54014311 54014311 A G ERLEC1 5'UTR 0.29 TCGA-DQ-7593-01 4 123097066 123097066 C A KIAA1109 Missense_Mutation p.H119N 0.08 benign(0.057) TCGA-DQ-7593-01 4 40439977 40439977 C A RBM47 Nonsense_Mutation p.E312* 0.12 TCGA-DQ-7593-01 4 5809991 5809991 C T EVC Silent p.H875H 0.14 TCGA-DQ-7593-01 5 140794477 140794477 G A PCDHGA10 Missense_Mutation p.V579M 0.09 deleterious_low_confidence(0.05) benign(0.346) TCGA-DQ-7593-01 6 26285431 26285431 G A HIST1H4H Silent p.Y99Y 0.14 TCGA-DQ-7593-01 7 26224608 26224609 CT - NFE2L3 Frame_Shift_Del p.S431Cfs*5 0.09 TCGA-DQ-7593-01 7 2983865 2983865 C T CARD11 Missense_Mutation p.S222N 0.19 deleterious(0) benign(0.28) TCGA-DQ-7593-01 9 116811047 116811047 G A ZNF618 Missense_Mutation p.G396R 0.16 deleterious(0) possibly_damaging(0.884) TCGA-DQ-7593-01 9 131783493 131783493 G A SH3GLB2 Nonsense_Mutation p.R71* 0.21 TCGA-DQ-7593-01 9 19296092 19296092 G A DENND4C Silent p.T296T 0.12 TCGA-DQ-7593-01 9 93375576 93375576 G A DIRAS2 Silent p.I178I 0.09 TCGA-DQ-7593-01 9 96714441 96714441 C T BARX1 3'UTR 0.07 TCGA-DQ-7593-01 X 101818299 101818299 G T NXF4 RNA 0.33 TCGA-DQ-7596-01 11 57076681 57076681 C T TNKS1BP1 Silent p.R1168R 0.05 TCGA-DQ-7596-01 11 62559833 62559833 C T NXF1 3'UTR 0.04 TCGA-DQ-7596-01 12 76786408 76786408 G C OSBPL8 Missense_Mutation p.F294L 0.06 tolerated(1) benign(0) TCGA-DQ-7596-01 15 43237511 43237511 G C UBR1 3'UTR 0.13 TCGA-DQ-7596-01 15 44864886 44864886 G C SPG11 Missense_Mutation p.S2113C 0.13 deleterious(0) possibly_damaging(0.563) TCGA-DQ-7596-01 16 90025437 90025437 G A DEF8 Missense_Mutation p.E191K 0.06 tolerated(0.27) benign(0.235) TCGA-DQ-7596-01 17 650236 650236 G C GEMIN4 Missense_Mutation p.C349W 0.25 tolerated(0.18) probably_damaging(0.989) TCGA-DQ-7596-01 19 1123582 1123582 C T SBNO2 Silent p.A193A 0.12 TCGA-DQ-7596-01 19 22940555 22940555 G A ZNF99 Missense_Mutation p.T719I 0.22 tolerated(0.22) possibly_damaging(0.454) TCGA-DQ-7596-01 1 12726598 12726598 G A AADACL4 Missense_Mutation p.R359H 0.30 deleterious(0.03) possibly_damaging(0.597) TCGA-DQ-7596-01 1 14106511 14106511 C T PRDM2 Missense_Mutation p.P741S 0.04 probably_damaging(0.994) TCGA-DQ-7596-01 1 158324402 158324402 G T CD1E Missense_Mutation p.Q98H 0.06 tolerated(0.38) possibly_damaging(0.664) TCGA-DQ-7596-01 1 171621695 171621695 C A MYOC Missense_Mutation p.Q19H 0.19 tolerated(0.3) benign(0.011) TCGA-DQ-7596-01 1 223285772 223285772 A T TLR5 Missense_Mutation p.F201Y 0.16 deleterious(0) possibly_damaging(0.573) TCGA-DQ-7596-01 1 226059715 226059715 G C TMEM63A Nonsense_Mutation p.S102* 0.05 TCGA-DQ-7596-01 1 62274164 62274164 C T INADL Nonsense_Mutation p.Q549* 0.09 TCGA-DQ-7596-01 20 31023282 31023282 G C ASXL1 Missense_Mutation p.E923Q 0.05 tolerated_low_confidence(0.07) benign(0.043) TCGA-DQ-7596-01 2 183582751 183582751 A G DNAJC10 5'UTR 0.32 TCGA-DQ-7596-01 2 24194237 24194237 C G UBXN2A Missense_Mutation p.Q45E 0.07 tolerated(0.65) benign(0.003) TCGA-DQ-7596-01 3 126189852 126189852 G A ZXDC Missense_Mutation p.R386W 0.15 deleterious(0) probably_damaging(0.997) TCGA-DQ-7596-01 3 30732969 30732969 C T TGFBR2 Missense_Mutation p.R553C 0.37 deleterious(0) probably_damaging(1) TCGA-DQ-7596-01 3 43121309 43121309 G A POMGNT2 Silent p.L539L 0.05 TCGA-DQ-7596-01 4 780459 780459 C T CPLX1 Missense_Mutation p.E79K 0.09 deleterious(0.02) possibly_damaging(0.747) TCGA-DQ-7596-01 5 14504698 14504698 G C TRIO Missense_Mutation p.E2870Q 0.05 unknown(0) TCGA-DQ-7596-01 5 148687053 148687053 G A AFAP1L1 Nonsense_Mutation p.W208* 0.11 TCGA-DQ-7596-01 5 159992577 159992577 G A ATP10B Silent p.S1423S 0.17 TCGA-DQ-7596-01 5 180335804 180335804 G T BTNL8 Missense_Mutation p.D90Y 0.04 deleterious(0.02) probably_damaging(1) TCGA-DQ-7596-01 5 67591125 67591129 TGAGA - PIK3R1 Frame_Shift_Del p.L573Qfs*27 0.13 TCGA-DQ-7596-01 6 132181556 132181556 C T ENPP1 Silent p.I275I 0.22 TCGA-DQ-7596-01 7 139164979 139164979 C T KLRG2 Missense_Mutation p.V258M 0.12 tolerated(1) benign(0.006) TCGA-DQ-7596-01 7 141315327 141315327 G C AGK Missense_Mutation p.L160F 0.04 tolerated(0.17) possibly_damaging(0.893) TCGA-DQ-7596-01 7 30486608 30486608 C T NOD1 Missense_Mutation p.E782K 0.07 tolerated(0.72) benign(0.345) TCGA-DQ-7596-01 7 33020103 33020103 T G FKBP9 Missense_Mutation p.S277R 0.04 tolerated(0.42) benign(0.128) TCGA-DQ-7596-01 7 4304762 4304762 G A SDK1 Missense_Mutation p.D2130N 0.11 deleterious(0.01) benign(0.024) TCGA-DQ-7596-01 8 141525224 141525224 G A CHRAC1 Splice_Site p.X92_splice 0.06 TCGA-DQ-7596-01 8 71069384 71069384 G T NCOA2 Missense_Mutation p.Q406K 0.11 tolerated(0.92) benign(0.007) TCGA-DQ-7596-01 9 112166752 112166752 G A PTPN3 Silent p.S643S 0.08 TCGA-DQ-7596-01 9 90321375 90321375 G A DAPK1 Missense_Mutation p.R1130H 0.08 deleterious(0) probably_damaging(0.938) TCGA-DQ-7596-01 X 53563554 53563554 C T HUWE1 Missense_Mutation p.R4071Q 0.10 unknown(0) TCGA-F7-7848-01 10 118355782 118355782 C G PNLIPRP1 Silent p.A174A 0.17 TCGA-F7-7848-01 10 14563106 14563106 C A FAM107B 3'UTR 0.42 TCGA-F7-7848-01 10 15838171 15838171 C A FAM188A Missense_Mutation p.D295Y 0.21 deleterious(0) possibly_damaging(0.815) TCGA-F7-7848-01 10 16982125 16982125 G A CUBN Silent p.L1818L 0.38 TCGA-F7-7848-01 10 17905606 17905606 G C MRC1L1 Missense_Mutation p.G566A 0.24 possibly_damaging(0.888) TCGA-F7-7848-01 10 30658020 30658020 C T AL161651.1 5'Flank 0.38 TCGA-F7-7848-01 10 49444559 49444559 G T FRMPD2 Missense_Mutation p.A320D 0.31 deleterious(0) probably_damaging(0.966) TCGA-F7-7848-01 10 49482674 49482674 G T FRMPD2 5'UTR 0.15 TCGA-F7-7848-01 10 50872936 50872936 C A CHAT Missense_Mutation p.H697Q 0.22 tolerated(0.07) possibly_damaging(0.638) TCGA-F7-7848-01 10 64415348 64415348 C G ZNF365 Intron 0.28 TCGA-F7-7848-01 10 78651359 78651359 G A KCNMA1 Missense_Mutation p.P1072L 0.19 tolerated(0.24) benign(0.422) TCGA-F7-7848-01 10 78846265 78846265 T C KCNMA1 Missense_Mutation p.H474R 0.27 tolerated(0.33) benign(0.039) TCGA-F7-7848-01 10 81317057 81317057 G A SFTPA2 Missense_Mutation p.R219W 0.11 tolerated(0.1) benign(0.009) TCGA-F7-7848-01 10 91528644 91528644 A T KIF20B Missense_Mutation p.K1707N 0.21 deleterious(0) probably_damaging(0.999) TCGA-F7-7848-01 10 93221100 93221100 A T HECTD2 Missense_Mutation p.N166I 0.28 deleterious(0.01) possibly_damaging(0.602) TCGA-F7-7848-01 10 94773979 94773979 A G EXOC6 Silent p.G708G 0.26 TCGA-F7-7848-01 10 97402775 97402775 C A ALDH18A1 Missense_Mutation p.G93W 0.24 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 11 102593338 102593338 T C MMP8 Missense_Mutation p.N57D 0.27 tolerated(0.24) benign(0.002) TCGA-F7-7848-01 11 106558147 106558147 T C GUCY1A2 3'UTR 0.32 TCGA-F7-7848-01 11 125871614 125871614 C T CDON Missense_Mutation p.V720I 0.33 deleterious(0.02) possibly_damaging(0.607) TCGA-F7-7848-01 11 131781280 131781280 C A NTM 5'Flank 0.43 TCGA-F7-7848-01 11 18195351 18195351 G C MRGPRX4 Missense_Mutation p.W183S 0.38 deleterious(0) possibly_damaging(0.84) TCGA-F7-7848-01 11 18741425 18741425 G - IGSF22 Frame_Shift_Del p.K179Rfs*47 0.27 TCGA-F7-7848-01 11 45277359 45277359 C G SYT13 Silent p.V89V 0.43 TCGA-F7-7848-01 11 55904831 55904831 G A OR8J3 Missense_Mutation p.R122C 0.35 deleterious(0.01) possibly_damaging(0.849) TCGA-F7-7848-01 11 60183406 60183406 C T MS4A14 Missense_Mutation p.S355F 0.29 deleterious(0.02) probably_damaging(0.922) TCGA-F7-7848-01 11 66008926 66008926 A G PACS1 Missense_Mutation p.I820V 0.12 tolerated(0.09) benign(0.42) TCGA-F7-7848-01 11 68548156 68548156 G T CPT1A Missense_Mutation p.N470K 0.65 deleterious(0) probably_damaging(0.985) TCGA-F7-7848-01 11 68665462 68665462 G T MRPL21 Silent p.S55S 0.23 TCGA-F7-7848-01 11 71850884 71850884 G T FOLR3 3'UTR 0.50 TCGA-F7-7848-01 11 86055847 86055847 A G C11orf73 Intron 0.29 TCGA-F7-7848-01 11 94533290 94533290 G T AMOTL1 Nonsense_Mutation p.E312* 0.47 TCGA-F7-7848-01 11 95713064 95713065 GT - MAML2 Frame_Shift_Del p.T840Hfs*36 0.35 TCGA-F7-7848-01 12 103245509 103245509 G A PAH Missense_Mutation p.H290Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-F7-7848-01 12 121879997 121879997 A T KDM2B Missense_Mutation p.C1083S 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-F7-7848-01 12 13768124 13768124 A G GRIN2B Silent p.S526S 0.23 TCGA-F7-7848-01 12 14018745 14018745 A G GRIN2B Missense_Mutation p.I133T 0.14 tolerated(0.08) probably_damaging(0.964) TCGA-F7-7848-01 12 15134431 15134431 T G PDE6H 3'UTR 0.13 TCGA-F7-7848-01 12 20801724 20801724 G T PDE3A Missense_Mutation p.D890Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-F7-7848-01 12 21327510 21327510 G C SLCO1B1 Splice_Site p.X76_splice 0.36 TCGA-F7-7848-01 12 52842695 52842695 C T KRT6B Silent p.K378K 0.42 TCGA-F7-7848-01 12 55794728 55794728 G A OR6C65 Missense_Mutation p.C139Y 0.38 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-F7-7848-01 12 7047905 7047905 G T ATN1 Missense_Mutation p.D927Y 0.15 probably_damaging(0.999) TCGA-F7-7848-01 12 78522567 78522567 C T NAV3 Silent p.D1454D 0.36 TCGA-F7-7848-01 12 81283142 81283142 G C LIN7A Missense_Mutation p.A30G 0.44 tolerated(0.22) benign(0.126) TCGA-F7-7848-01 12 8667867 8667867 G T CLEC4D Missense_Mutation p.V22F 0.21 deleterious(0.02) possibly_damaging(0.713) TCGA-F7-7848-01 13 33679701 33679701 C T STARD13 3'UTR 0.43 TCGA-F7-7848-01 13 35632986 35632986 G C NBEA Missense_Mutation p.G409R 0.27 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 13 53035751 53035751 C T CKAP2 Missense_Mutation p.R265W 0.42 deleterious(0.01) benign(0.002) TCGA-F7-7848-01 13 61986650 61986650 C T PCDH20 Missense_Mutation p.D528N 0.33 deleterious(0.01) benign(0.123) TCGA-F7-7848-01 13 88328295 88328295 G T SLITRK5 Missense_Mutation p.V218L 0.40 tolerated(0.17) benign(0.003) TCGA-F7-7848-01 13 96237044 96237044 C T DZIP1 Missense_Mutation p.A824T 0.33 tolerated(0.91) benign(0) TCGA-F7-7848-01 13 99087858 99087858 G C FARP1 Silent p.V724V 0.35 TCGA-F7-7848-01 14 100612969 100612969 C T DEGS2 3'UTR 0.50 TCGA-F7-7848-01 14 101194741 101194741 T G DLK1 Missense_Mutation p.C26G 0.12 deleterious(0) possibly_damaging(0.685) TCGA-F7-7848-01 14 20215674 20215674 C A OR4Q3 Missense_Mutation p.L30I 0.22 tolerated(0.56) benign(0.001) TCGA-F7-7848-01 14 20781866 20781866 C G CCNB1IP1 Missense_Mutation p.S131T 0.09 tolerated(0.41) benign(0.074) TCGA-F7-7848-01 14 21991721 21991721 A C SALL2 Missense_Mutation p.L714R 0.21 deleterious(0) probably_damaging(0.999) TCGA-F7-7848-01 14 24652822 24652822 G A IPO4 Silent p.A679A 0.16 TCGA-F7-7848-01 14 25100197 25100197 G T GZMB 3'UTR 0.11 TCGA-F7-7848-01 14 28734043 28734043 C A BNIP3P1 RNA 0.33 TCGA-F7-7848-01 14 34419578 34419578 G T EGLN3 Intron 0.41 TCGA-F7-7848-01 14 36128345 36128345 G A RALGAPA1 Nonsense_Mutation p.R1290* 0.31 TCGA-F7-7848-01 14 38678848 38678848 G T SSTR1 Missense_Mutation p.R85L 0.31 deleterious(0) probably_damaging(0.982) TCGA-F7-7848-01 14 47120455 47120455 C A RPL10L Missense_Mutation p.R162L 0.32 deleterious(0.04) benign(0.117) TCGA-F7-7848-01 14 50360768 50360768 G C ARF6 Missense_Mutation p.R105P 0.26 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-F7-7848-01 14 55408131 55408131 G A WDHD1 3'UTR 0.29 TCGA-F7-7848-01 14 64855005 64855005 A C MTHFD1 5'Flank 0.21 TCGA-F7-7848-01 14 80164140 80164140 C A NRXN3 Missense_Mutation p.L889M 0.31 deleterious(0) benign(0.009) TCGA-F7-7848-01 14 95574699 95574699 T G DICER1 Silent p.R800R 0.28 TCGA-F7-7848-01 15 20588500 20588500 A T HERC2P3 RNA 0.35 TCGA-F7-7848-01 15 22473173 22473173 G T IGHV4OR15-8 Missense_Mutation p.P33H 0.13 deleterious(0) probably_damaging(0.998) TCGA-F7-7848-01 15 25440139 25440139 G C SNORD115-14 RNA 0.39 TCGA-F7-7848-01 15 25940061 25940061 C A ATP10A Missense_Mutation p.C998F 0.51 deleterious(0) possibly_damaging(0.868) TCGA-F7-7848-01 15 30012801 30012801 C T TJP1 Missense_Mutation p.D842N 0.51 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 15 31819495 31819495 G C OTUD7A Missense_Mutation p.H223Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-F7-7848-01 15 33855069 33855069 A T RYR3 Missense_Mutation p.K335M 0.38 probably_damaging(0.982) TCGA-F7-7848-01 15 41801279 41801279 C A LTK Missense_Mutation p.G349V 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-F7-7848-01 15 45695581 45695581 G C SPATA5L1 Missense_Mutation p.E318D 0.50 deleterious(0.03) probably_damaging(0.951) TCGA-F7-7848-01 15 63125847 63125847 C T TLN2 Intron 0.44 TCGA-F7-7848-01 15 84582010 84582010 G A ADAMTSL3 Missense_Mutation p.E623K 0.41 tolerated(0.68) benign(0.005) TCGA-F7-7848-01 15 91811780 91811780 A G SV2B Missense_Mutation p.I440V 0.07 tolerated(0.07) benign(0.025) TCGA-F7-7848-01 16 1570757 1570757 T C IFT140 Missense_Mutation p.E1169G 0.32 deleterious(0) possibly_damaging(0.616) TCGA-F7-7848-01 16 17211771 17211771 C A XYLT1 Missense_Mutation p.M763I 0.38 tolerated(0.25) benign(0.309) TCGA-F7-7848-01 16 20793103 20793103 T CA ACSM3 Frame_Shift_Ins p.I338Tfs*5 0.16 TCGA-F7-7848-01 16 23640992 23640992 C A PALB2 Missense_Mutation p.C828F 0.15 tolerated(0.8) benign(0.037) TCGA-F7-7848-01 16 24578538 24578538 T G RBBP6 Missense_Mutation p.V555G 0.23 deleterious_low_confidence(0) benign(0.307) TCGA-F7-7848-01 16 28895897 28895897 G T ATP2A1 Silent p.V155V 0.26 TCGA-F7-7848-01 16 30977521 30977521 C T SETD1A Silent p.P773P 0.18 TCGA-F7-7848-01 16 31045834 31045834 G T STX4 Missense_Mutation p.R95M 0.11 deleterious(0.02) possibly_damaging(0.827) TCGA-F7-7848-01 16 31075210 31075210 C T ZNF668 Missense_Mutation p.A214T 0.36 tolerated(1) possibly_damaging(0.899) TCGA-F7-7848-01 16 3119394 3119394 C A IL32 3'UTR 0.21 TCGA-F7-7848-01 16 46615586 46615586 C A SHCBP1 3'UTR 0.06 TCGA-F7-7848-01 16 48119591 48119591 C A ABCC12 Missense_Mutation p.Q1247H 0.41 tolerated(0.23) benign(0.014) TCGA-F7-7848-01 16 67201122 67201122 G A HSF4 Silent p.Q242Q 0.35 TCGA-F7-7848-01 16 67319227 67319227 G A PLEKHG4 Missense_Mutation p.E744K 0.07 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 16 69373994 69374094 16:69373994-69374094 - NIP7 large deletion p.X48_splice 0.09 TCGA-F7-7848-01 16 82182435 82182435 C G MPHOSPH6 Missense_Mutation p.K128N 0.26 deleterious(0.02) benign(0.023) TCGA-F7-7848-01 16 9857816 9857816 G T GRIN2A Missense_Mutation p.D1195E 0.26 tolerated(0.93) benign(0.022) TCGA-F7-7848-01 17 10432120 10432120 C A MYH2 Nonsense_Mutation p.E1211* 0.29 TCGA-F7-7848-01 17 13400051 13400052 GC - HS3ST3A1 Frame_Shift_Del p.R228Hfs*146 0.20 TCGA-F7-7848-01 17 19480696 19480696 C A SLC47A1 Missense_Mutation p.P515T 0.28 tolerated(0.71) benign(0) TCGA-F7-7848-01 17 19480697 19480697 C A SLC47A1 Missense_Mutation p.P515H 0.27 tolerated(0.11) benign(0.002) TCGA-F7-7848-01 17 21319644 21319644 G T KCNJ12 Silent p.V330V 0.06 TCGA-F7-7848-01 17 39565022 39565022 G A AC003958.2 RNA 0.40 TCGA-F7-7848-01 17 4443014 4443014 G C MYBBP1A Missense_Mutation p.P1228R 0.25 deleterious(0.01) benign(0.331) TCGA-F7-7848-01 17 61987372 61987372 G A CSHL1 Intron 0.25 TCGA-F7-7848-01 17 67148622 67148622 C - ABCA10 Frame_Shift_Del p.W1379Cfs*17 0.21 TCGA-F7-7848-01 17 6927486 6927486 C G BCL6B Silent p.G88G 0.34 TCGA-F7-7848-01 17 7399318 7399318 G C POLR2A Missense_Mutation p.R51P 0.21 probably_damaging(0.954) TCGA-F7-7848-01 17 7577081 7577081 T A TP53 Missense_Mutation p.E286V 0.33 deleterious(0) probably_damaging(0.987) TCGA-F7-7848-01 17 7579514 7579514 G - TP53 Frame_Shift_Del p.P58Qfs*65 0.19 TCGA-F7-7848-01 17 76692093 76692093 T G CYTH1 Intron 0.37 TCGA-F7-7848-01 17 80477969 80477969 A C FOXK2 Missense_Mutation p.M69L 0.18 deleterious(0.01) benign(0.306) TCGA-F7-7848-01 18 5891793 5891793 C G TMEM200C Silent p.P90P 0.49 TCGA-F7-7848-01 18 71816193 71816193 A C TIMM21 Missense_Mutation p.K50N 0.30 tolerated(0.18) benign(0.03) TCGA-F7-7848-01 18 71816197 71816197 C G TIMM21 Missense_Mutation p.L52V 0.29 tolerated(1) benign(0) TCGA-F7-7848-01 18 7955363 7955363 T A PTPRM Silent p.G361G 0.50 TCGA-F7-7848-01 19 11943503 11943503 C G ZNF440 Missense_Mutation p.I504M 0.29 tolerated(0.2) benign(0.157) TCGA-F7-7848-01 19 11943668 11943668 A G ZNF440 Silent p.E559E 0.33 TCGA-F7-7848-01 19 12060260 12060260 A T ZNF700 Missense_Mutation p.Y474F 0.19 deleterious(0.03) probably_damaging(0.968) TCGA-F7-7848-01 19 12867030 12867030 G A BEST2 Missense_Mutation p.E342K 0.16 tolerated(0.34) benign(0.281) TCGA-F7-7848-01 19 13247186 13247186 G T NACC1 Missense_Mutation p.G363C 0.17 deleterious(0) probably_damaging(0.997) TCGA-F7-7848-01 19 15989492 15989492 T A CYP4F2 3'UTR 0.25 TCGA-F7-7848-01 19 30935685 30935685 C G ZNF536 Missense_Mutation p.P406A 0.26 deleterious(0.01) benign(0.437) TCGA-F7-7848-01 19 3282450 3282450 C A CELF5 Missense_Mutation p.H331Q 0.18 tolerated(1) benign(0) TCGA-F7-7848-01 19 36351814 36351814 G C KIRREL2 Missense_Mutation p.G311A 0.33 tolerated(0.14) possibly_damaging(0.466) TCGA-F7-7848-01 19 40542336 40542336 T C ZNF780B Missense_Mutation p.I144V 0.30 tolerated(0.42) benign(0.031) TCGA-F7-7848-01 19 40978616 40978616 C T SPTBN4 Missense_Mutation p.R30W 0.20 deleterious(0.02) possibly_damaging(0.793) TCGA-F7-7848-01 19 42354396 42354396 C T DMRTC2 Missense_Mutation p.L258F 0.23 deleterious(0.02) benign(0.038) TCGA-F7-7848-01 19 46205167 46205167 G A QPCTL Missense_Mutation p.R333H 0.45 tolerated(0.11) benign(0.003) TCGA-F7-7848-01 19 53473212 53473212 A C ZNF702P RNA 0.23 TCGA-F7-7848-01 19 54304538 54304538 C A NLRP12 Missense_Mutation p.G900V 0.20 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 19 54692190 54692190 C T MBOAT7 Silent p.L29L 0.24 TCGA-F7-7848-01 19 55446005 55446005 G T NLRP7 Missense_Mutation p.P775T 0.29 tolerated(1) benign(0) TCGA-F7-7848-01 19 55915802 55915802 G A UBE2S Silent p.L66L 0.25 TCGA-F7-7848-01 19 56459511 56459511 G T NLRP8 Missense_Mutation p.W81C 0.27 tolerated(0.15) possibly_damaging(0.556) TCGA-F7-7848-01 19 56901748 56901748 T C ZNF582 Silent p.S44S 0.33 TCGA-F7-7848-01 19 57327096 57327096 T A PEG3 Missense_Mutation p.Q905L 0.24 tolerated(0.06) benign(0.022) TCGA-F7-7848-01 19 57646302 57646302 C A ZIM3 Missense_Mutation p.R468I 0.16 deleterious(0) possibly_damaging(0.498) TCGA-F7-7848-01 19 5776299 5776299 A G CATSPERD Missense_Mutation p.Y690C 0.32 tolerated(0.16) possibly_damaging(0.857) TCGA-F7-7848-01 19 58117342 58117342 G T ZNF530 Missense_Mutation p.G150V 0.32 tolerated(0.66) benign(0.001) TCGA-F7-7848-01 19 5831891 5831891 G T FUT6 Missense_Mutation p.Q230K 0.19 tolerated(0.64) benign(0.005) TCGA-F7-7848-01 19 58639938 58639938 C G ZNF329 Silent p.G311G 0.23 TCGA-F7-7848-01 1 102290738 102290738 C A OLFM3 Missense_Mutation p.D146Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-F7-7848-01 1 103354181 103354181 G T COL11A1 Silent p.P1520P 0.21 TCGA-F7-7848-01 1 103354182 103354182 G T COL11A1 Missense_Mutation p.P1520H 0.20 unknown(0) TCGA-F7-7848-01 1 112305593 112305593 G C DDX20 Missense_Mutation p.A426P 0.18 deleterious(0) probably_damaging(0.999) TCGA-F7-7848-01 1 150938997 150938997 C G CERS2 Missense_Mutation p.W319C 0.29 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 1 151318800 151318800 G T RFX5 5'UTR 0.29 TCGA-F7-7848-01 1 152883955 152883955 C G IVL Missense_Mutation p.T561R 0.24 tolerated_low_confidence(0.06) unknown(0) TCGA-F7-7848-01 1 153914360 153914360 C G DENND4B Missense_Mutation p.R347P 0.28 tolerated(0.19) benign(0.291) TCGA-F7-7848-01 1 157667241 157667241 C G FCRL3 Intron 0.29 TCGA-F7-7848-01 1 162557316 162557316 G A UAP1 Missense_Mutation p.D296N 0.28 tolerated(0.1) possibly_damaging(0.82) TCGA-F7-7848-01 1 163317627 163317627 C T NUF2 Silent p.F341F 0.20 TCGA-F7-7848-01 1 175375900 175375900 G T TNR 5'UTR 0.19 TCGA-F7-7848-01 1 176671756 176671756 G T PAPPA2 Nonsense_Mutation p.G1084* 0.22 TCGA-F7-7848-01 1 176675542 176675542 G C PAPPA2 Missense_Mutation p.G1138A 0.12 deleterious(0) possibly_damaging(0.888) TCGA-F7-7848-01 1 176709164 176709164 C G PAPPA2 Missense_Mutation p.T1328S 0.27 tolerated(0.3) benign(0.005) TCGA-F7-7848-01 1 180034395 180034395 G T CEP350 Missense_Mutation p.R1852L 0.26 possibly_damaging(0.72) TCGA-F7-7848-01 1 186060049 186060049 G T HMCN1 Missense_Mutation p.R3296L 0.20 probably_damaging(0.996) TCGA-F7-7848-01 1 186094925 186094925 T C HMCN1 Missense_Mutation p.V4230A 0.25 benign(0.174) TCGA-F7-7848-01 1 196697650 196697650 C A CFH Nonsense_Mutation p.S804* 0.22 TCGA-F7-7848-01 1 196709852 196709852 T A CFH Silent p.G962G 0.27 TCGA-F7-7848-01 1 203140617 203140617 G C MYBPH Silent p.S229S 0.18 TCGA-F7-7848-01 1 214170722 214170722 G A PROX1 Missense_Mutation p.E282K 0.18 tolerated(0.06) benign(0.073) TCGA-F7-7848-01 1 234444872 234444872 A T SLC35F3 Missense_Mutation p.N212Y 0.28 deleterious(0) possibly_damaging(0.861) TCGA-F7-7848-01 1 234444975 234444975 C A SLC35F3 Missense_Mutation p.T246N 0.26 deleterious(0) benign(0.432) TCGA-F7-7848-01 1 23695747 23695747 G A C1orf213 5'UTR 0.35 TCGA-F7-7848-01 1 237923109 237923109 G T RYR2 Missense_Mutation p.V3787L 0.18 benign(0.002) TCGA-F7-7848-01 1 240351556 240351556 C G FMN2 Silent p.V660V 0.26 TCGA-F7-7848-01 1 240976951 240976951 G T RGS7 Missense_Mutation p.S308Y 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-F7-7848-01 1 247835845 247835845 C A OR13G1 Missense_Mutation p.G167W 0.15 deleterious(0) probably_damaging(0.999) TCGA-F7-7848-01 1 248551061 248551061 T C OR2T6 Missense_Mutation p.I51T 0.23 tolerated(0.78) benign(0.001) TCGA-F7-7848-01 1 248685492 248685492 C T OR2G6 Missense_Mutation p.P182L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-F7-7848-01 1 3418409 3418409 C G MEGF6 Silent p.T755T 0.29 TCGA-F7-7848-01 1 41094945 41094945 G C RIMS3 Missense_Mutation p.P191R 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F7-7848-01 1 44878355 44878355 C T RNF220 Missense_Mutation p.R196W 0.25 deleterious(0.02) possibly_damaging(0.874) TCGA-F7-7848-01 1 57610988 57610988 C T DAB1 Missense_Mutation p.C61Y 0.21 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 1 62626626 62626626 T C INADL 3'UTR 0.23 TCGA-F7-7848-01 1 67861293 67861293 C A IL12RB2 Missense_Mutation p.P704T 0.21 tolerated(0.84) benign(0.008) TCGA-F7-7848-01 1 67861294 67861294 C A IL12RB2 Missense_Mutation p.P704Q 0.22 deleterious(0.01) possibly_damaging(0.865) TCGA-F7-7848-01 1 7895935 7895935 G A PER3 Missense_Mutation p.E1101K 0.23 deleterious(0.03) probably_damaging(0.974) TCGA-F7-7848-01 1 79093945 79093945 T C IFI44L Silent p.R115R 0.27 TCGA-F7-7848-01 1 79385874 79385874 A T ELTD1 Silent p.T485T 0.24 TCGA-F7-7848-01 1 86210435 86210435 T C COL24A1 Missense_Mutation p.H1529R 0.24 tolerated(0.11) benign(0.004) TCGA-F7-7848-01 1 89271325 89271325 A T PKN2 Silent p.V549V 0.26 TCGA-F7-7848-01 1 94964203 94964203 G T ABCD3 Nonsense_Mutation p.G478* 0.23 TCGA-F7-7848-01 20 1918052 1918052 G T SIRPA Silent p.T451T 0.08 TCGA-F7-7848-01 20 19701792 19701792 G A SLC24A3 3'UTR 0.43 TCGA-F7-7848-01 20 20177327 20177327 G A C20orf26 Silent p.R568R 0.44 TCGA-F7-7848-01 20 31590391 31590392 AC - SUN5 Splice_Site p.X71_splice 0.28 TCGA-F7-7848-01 20 36869162 36869162 A G KIAA1755 Silent p.P457P 0.29 TCGA-F7-7848-01 20 50776766 50776766 T C ZFP64 Missense_Mutation p.K220R 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-F7-7848-01 20 52198454 52198454 T A ZNF217 Missense_Mutation p.K304N 0.25 deleterious(0) probably_damaging(0.952) TCGA-F7-7848-01 20 52612559 52612559 G T BCAS1 Missense_Mutation p.Q252K 0.32 deleterious(0.03) possibly_damaging(0.487) TCGA-F7-7848-01 20 54573480 54573480 A G CBLN4 3'UTR 0.53 TCGA-F7-7848-01 21 37741308 37741308 C G MORC3 Missense_Mutation p.R548G 0.21 tolerated(0.39) benign(0.079) TCGA-F7-7848-01 22 26873050 26873050 C A HPS4 Missense_Mutation p.R62L 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-F7-7848-01 22 32586644 32586644 G T RFPL2 3'UTR 0.30 TCGA-F7-7848-01 22 32643427 32643427 G T SLC5A4 Missense_Mutation p.L150I 0.16 deleterious(0.02) benign(0.248) TCGA-F7-7848-01 22 37196819 37196819 G A PVALB 3'UTR 0.29 TCGA-F7-7848-01 22 47062734 47062734 A G GRAMD4 Missense_Mutation p.I274M 0.24 deleterious(0.01) possibly_damaging(0.714) TCGA-F7-7848-01 22 50893510 50893510 T C SBF1 Missense_Mutation p.Y1539C 0.15 deleterious(0) probably_damaging(0.997) TCGA-F7-7848-01 2 100210155 100210155 G T AFF3 Missense_Mutation p.S681R 0.28 deleterious(0.01) possibly_damaging(0.857) TCGA-F7-7848-01 2 109473416 109473416 G T CCDC138 Silent p.T561T 0.20 TCGA-F7-7848-01 2 128409254 128409254 A G GPR17 Silent p.K343K 0.15 TCGA-F7-7848-01 2 138169330 138169330 A C THSD7B Silent p.G949G 0.29 TCGA-F7-7848-01 2 149447814 149447814 A G EPC2 Missense_Mutation p.Q62R 0.29 deleterious(0.01) possibly_damaging(0.771) TCGA-F7-7848-01 2 158272443 158272443 G T CYTIP Silent p.R276R 0.30 TCGA-F7-7848-01 2 160833232 160833232 C T PLA2R1 Splice_Site p.X801_splice 0.30 TCGA-F7-7848-01 2 163027570 163027570 G A FAP Silent p.H734H 0.26 TCGA-F7-7848-01 2 166245537 166245537 T A SCN2A Missense_Mutation p.S1741T 0.22 tolerated(0.11) possibly_damaging(0.556) TCGA-F7-7848-01 2 169999284 169999284 C A LRP2 Missense_Mutation p.Q4336H 0.27 benign(0.243) TCGA-F7-7848-01 2 175618121 175618121 G A CHRNA1 Intron 0.24 TCGA-F7-7848-01 2 176981826 176981826 C G HOXD10 Missense_Mutation p.R89G 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-F7-7848-01 2 179588653 179588653 C T TTN Missense_Mutation p.M7111I 0.24 TCGA-F7-7848-01 2 185800594 185800594 G T ZNF804A Silent p.V157V 0.28 TCGA-F7-7848-01 2 185803491 185803491 A C ZNF804A Missense_Mutation p.K1123T 0.29 deleterious(0.02) probably_damaging(0.981) TCGA-F7-7848-01 2 186672707 186672707 C A FSIP2 Missense_Mutation p.S6314Y 0.27 possibly_damaging(0.876) TCGA-F7-7848-01 2 196578254 196578254 G A SLC39A10 Nonsense_Mutation p.W558* 0.42 TCGA-F7-7848-01 2 196765106 196765106 G C DNAH7 Missense_Mutation p.A1483G 0.29 deleterious(0.03) probably_damaging(0.967) TCGA-F7-7848-01 2 196765116 196765116 T C DNAH7 Missense_Mutation p.K1480E 0.27 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 2 197183378 197183378 C T HECW2 Missense_Mutation p.A746T 0.20 tolerated(0.36) benign(0.001) TCGA-F7-7848-01 2 210559334 210559334 G - MAP2 Frame_Shift_Del p.G814Afs*9 0.21 TCGA-F7-7848-01 2 21234732 21234732 C A APOB Nonsense_Mutation p.E1670* 0.22 TCGA-F7-7848-01 2 223554124 223554124 A T MOGAT1 Silent p.S138S 0.24 TCGA-F7-7848-01 2 228169782 228169782 G A COL4A3 Missense_Mutation p.G1412D 0.16 unknown(0) TCGA-F7-7848-01 2 228497883 228497883 A T C2orf83 5'UTR 0.26 TCGA-F7-7848-01 2 228563763 228563763 C A SLC19A3 Missense_Mutation p.G223V 0.23 tolerated(0.19) benign(0.008) TCGA-F7-7848-01 2 228681044 228681044 G T CCL20 Missense_Mutation p.L71F 0.29 tolerated(0.16) benign(0.081) TCGA-F7-7848-01 2 228855881 228855881 A T SPHKAP Silent p.P1598P 0.26 TCGA-F7-7848-01 2 233273006 233273006 G T ALPPL2 Missense_Mutation p.M226I 0.17 deleterious(0) possibly_damaging(0.883) TCGA-F7-7848-01 2 233344762 233344762 G A ECEL1 3'UTR 0.54 TCGA-F7-7848-01 2 40656161 40656161 C G SLC8A1 Missense_Mutation p.E420D 0.21 deleterious(0) probably_damaging(0.999) TCGA-F7-7848-01 2 42472706 42472706 A G EML4 Silent p.S29S 0.33 TCGA-F7-7848-01 2 56420144 56420144 G T CCDC85A Missense_Mutation p.R270L 0.27 deleterious_low_confidence(0.01) benign(0.085) TCGA-F7-7848-01 2 70443968 70443968 G A TIA1 Intron 0.31 TCGA-F7-7848-01 2 90078011 90078011 A G IGKV3D-20 Splice_Site p.X17_splice 0.22 TCGA-F7-7848-01 2 90212015 90212015 G T IGKV3D-11 Missense_Mutation p.G36V 0.22 deleterious(0) probably_damaging(0.937) TCGA-F7-7848-01 2 95539235 95539236 CT - TEKT4 Intron 0.16 TCGA-F7-7848-01 3 100963523 100963523 G C IMPG2 Missense_Mutation p.S551C 0.29 deleterious(0.02) possibly_damaging(0.711) TCGA-F7-7848-01 3 111632432 111632432 C T PHLDB2 Silent p.T534T 0.24 TCGA-F7-7848-01 3 111958692 111958692 A G SLC9C1 Missense_Mutation p.Y481H 0.24 deleterious(0) probably_damaging(0.976) TCGA-F7-7848-01 3 121342100 121342100 C A FBXO40 Silent p.A608A 0.21 TCGA-F7-7848-01 3 121500720 121500720 G A IQCB1 Missense_Mutation p.A427V 0.27 tolerated(1) benign(0.005) TCGA-F7-7848-01 3 126723963 126723963 C T PLXNA1 Missense_Mutation p.L592F 0.13 deleterious(0.02) possibly_damaging(0.793) TCGA-F7-7848-01 3 126733570 126733570 G A PLXNA1 Missense_Mutation p.G925R 0.29 tolerated(0.08) possibly_damaging(0.663) TCGA-F7-7848-01 3 133119261 133119261 G T BFSP2 Missense_Mutation p.G112W 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-F7-7848-01 3 142186867 142186867 T C ATR Missense_Mutation p.N2199S 0.27 tolerated(0.41) benign(0.031) TCGA-F7-7848-01 3 154866441 154866441 G C MME Missense_Mutation p.E534Q 0.14 tolerated(0.5) benign(0.028) TCGA-F7-7848-01 3 159605505 159605505 G C IQCJ-SCHIP1 Missense_Mutation p.Q411H 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-F7-7848-01 3 160964156 160964156 A G NMD3 Silent p.T350T 0.25 TCGA-F7-7848-01 3 164906463 164906463 C A SLITRK3 Missense_Mutation p.S719I 0.40 tolerated(0.31) benign(0.024) TCGA-F7-7848-01 3 164908115 164908115 T A SLITRK3 Silent p.A168A 0.26 TCGA-F7-7848-01 3 17051331 17051331 C T PLCL2 Silent p.L39L 0.15 TCGA-F7-7848-01 3 183479353 183479353 A T YEATS2 Missense_Mutation p.K572M 0.31 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-F7-7848-01 3 186358445 186358445 C G FETUB Missense_Mutation p.R66G 0.23 deleterious(0) probably_damaging(0.99) TCGA-F7-7848-01 3 192125893 192125893 C T FGF12 Silent p.L40L 0.24 TCGA-F7-7848-01 3 27183039 27183039 C A NEK10 Silent p.V1025V 0.10 TCGA-F7-7848-01 3 36545898 36545898 A T STAC Silent p.P260P 0.14 TCGA-F7-7848-01 3 432410 432410 G T CHL1 Missense_Mutation p.G833W 0.24 deleterious(0) possibly_damaging(0.749) TCGA-F7-7848-01 3 46479621 46479621 C A LTF Splice_Site p.X637_splice 0.18 TCGA-F7-7848-01 3 49137814 49137814 T G QARS Silent p.R352R 0.15 TCGA-F7-7848-01 3 49142161 49142161 C G QARS Silent p.A2A 0.19 TCGA-F7-7848-01 3 49933215 49933215 C A MST1R Missense_Mutation p.L965F 0.14 tolerated(0.13) benign(0.274) TCGA-F7-7848-01 3 56468959 56468959 C T ERC2 Missense_Mutation p.R26H 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-F7-7848-01 3 74344279 74344279 C A CNTN3 Missense_Mutation p.G837V 0.16 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 3 88189924 88189924 A C ZNF654 Missense_Mutation p.E488D 0.15 deleterious(0.04) benign(0.059) TCGA-F7-7848-01 3 95374606 95374606 C G MTHFD2P1 RNA 0.31 TCGA-F7-7848-01 3 97887715 97887715 C A OR5H15 Missense_Mutation p.P58T 0.24 deleterious(0) possibly_damaging(0.901) TCGA-F7-7848-01 4 103225478 103225478 A G SLC39A8 Missense_Mutation p.L279P 0.25 tolerated(0.28) possibly_damaging(0.765) TCGA-F7-7848-01 4 114179511 114179511 T C ANK2 Silent p.L444L 0.32 TCGA-F7-7848-01 4 123814172 123814172 C A NUDT6 Silent p.L254L 0.26 TCGA-F7-7848-01 4 125593009 125593009 T G ANKRD50 Missense_Mutation p.M475L 0.21 tolerated(0.63) benign(0.055) TCGA-F7-7848-01 4 134072306 134072306 C A PCDH10 Silent p.A337A 0.20 TCGA-F7-7848-01 4 145659139 145659139 A T HHIP 3'UTR 0.17 TCGA-F7-7848-01 4 151504976 151504976 C A MAB21L2 Silent p.P265P 0.19 TCGA-F7-7848-01 4 155507623 155507623 T C FGA Missense_Mutation p.T320A 0.23 tolerated_low_confidence(0.38) possibly_damaging(0.636) TCGA-F7-7848-01 4 156632130 156632130 C A GUCY1A3 Silent p.P271P 0.25 TCGA-F7-7848-01 4 162376271 162376271 G - FSTL5 Frame_Shift_Del p.L576Wfs*38 0.17 TCGA-F7-7848-01 4 162841715 162841715 G T FSTL5 Missense_Mutation p.Q84K 0.29 tolerated(0.33) benign(0) TCGA-F7-7848-01 4 164247554 164247554 G T NPY1R Silent p.I51I 0.25 TCGA-F7-7848-01 4 165891217 165891217 A G TRIM61 5'UTR 0.21 TCGA-F7-7848-01 4 167663155 167663155 C A SPOCK3 Missense_Mutation p.K332N 0.35 tolerated(0.06) possibly_damaging(0.776) TCGA-F7-7848-01 4 1730308 1730308 C - TACC3 Frame_Shift_Del p.M396Cfs*65 0.19 TCGA-F7-7848-01 4 183600970 183600970 T C TENM3 Missense_Mutation p.L493P 0.32 deleterious(0) possibly_damaging(0.902) TCGA-F7-7848-01 4 186446225 186446225 G A PDLIM3 Missense_Mutation p.A65V 0.34 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 4 187155174 187155174 C A KLKB1 Missense_Mutation p.S97Y 0.23 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 4 1902706 1902706 G T WHSC1 Missense_Mutation p.G109W 0.25 deleterious(0.01) probably_damaging(0.916) TCGA-F7-7848-01 4 1980436 1980436 C A WHSC1 Missense_Mutation p.P1300T 0.28 deleterious(0) probably_damaging(0.999) TCGA-F7-7848-01 4 3182271 3182271 G A HTT Missense_Mutation p.D1548N 0.24 probably_damaging(1) TCGA-F7-7848-01 4 46252411 46252411 C G GABRA2 Missense_Mutation p.V424L 0.24 tolerated(1) benign(0.011) TCGA-F7-7848-01 4 55161418 55161418 G T PDGFRA Silent p.L1083L 0.25 TCGA-F7-7848-01 4 56763010 56763010 G T EXOC1 Missense_Mutation p.R694L 0.23 tolerated(0.08) possibly_damaging(0.894) TCGA-F7-7848-01 4 59331 59331 A T ZNF595 Silent p.V4V 0.04 TCGA-F7-7848-01 4 6302728 6302728 G C WFS1 Silent p.L402L 0.24 TCGA-F7-7848-01 4 69184563 69184563 G A YTHDC1 Nonsense_Mutation p.R568* 0.08 TCGA-F7-7848-01 4 69519826 69519826 G A UGT2B15 Silent p.L414L 0.25 TCGA-F7-7848-01 4 71657090 71657090 C T RUFY3 Intron 0.39 TCGA-F7-7848-01 4 74846832 74846832 C T PF4 3'UTR 0.17 TCGA-F7-7848-01 4 75675872 75675872 T A BTC Missense_Mutation p.R113S 0.19 deleterious(0.01) benign(0.407) TCGA-F7-7848-01 4 77003168 77003168 T C ART3 Silent p.P87P 0.29 TCGA-F7-7848-01 4 80327826 80327826 G A GK2 Missense_Mutation p.S510L 0.18 deleterious(0) possibly_damaging(0.611) TCGA-F7-7848-01 4 8477672 8477672 C T TRMT44 Missense_Mutation p.H740Y 0.13 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 5 102201878 102201878 G A PAM 5'UTR 0.34 TCGA-F7-7848-01 5 112920103 112920103 C T YTHDC2 Missense_Mutation p.S1251F 0.34 deleterious(0.02) benign(0.219) TCGA-F7-7848-01 5 127730926 127730926 G C FBN2 Missense_Mutation p.R374G 0.30 deleterious(0.02) possibly_damaging(0.534) TCGA-F7-7848-01 5 136476329 136476329 A C SPOCK1 Missense_Mutation p.V96G 0.29 deleterious(0) probably_damaging(0.933) TCGA-F7-7848-01 5 176004720 176004720 C A CDHR2 Missense_Mutation p.P478H 0.46 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 5 176638682 176638682 G - NSD1 Frame_Shift_Del p.G1095Afs*3 0.31 TCGA-F7-7848-01 5 21752113 21752113 G T CDH12 Silent p.P706P 0.22 TCGA-F7-7848-01 5 21752115 21752115 G T CDH12 Missense_Mutation p.P706T 0.22 tolerated(0.29) benign(0.004) TCGA-F7-7848-01 5 26903772 26903772 G T CDH9 Missense_Mutation p.Q325K 0.26 tolerated(0.07) benign(0.081) TCGA-F7-7848-01 5 26988327 26988327 C A CDH9 Silent p.A38A 0.28 TCGA-F7-7848-01 5 31799682 31799682 C A PDZD2 Missense_Mutation p.H109Q 0.21 deleterious(0.04) probably_damaging(0.925) TCGA-F7-7848-01 5 35965518 35965518 C T UGT3A1 Silent p.L271L 0.19 TCGA-F7-7848-01 5 36035780 36035780 C T UGT3A2 3'UTR 0.23 TCGA-F7-7848-01 5 41019000 41019000 G T MROH2B Missense_Mutation p.D854E 0.17 deleterious(0.05) probably_damaging(0.971) TCGA-F7-7848-01 5 54683820 54683820 G A SKIV2L2 Missense_Mutation p.D691N 0.18 tolerated(0.19) benign(0.033) TCGA-F7-7848-01 5 56777903 56777903 C T ACTBL2 Missense_Mutation p.R211Q 0.25 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-F7-7848-01 6 116442113 116442113 C T COL10A1 Missense_Mutation p.G389E 0.33 deleterious(0) unknown(0) TCGA-F7-7848-01 6 11714637 11714637 C A ADTRP 3'UTR 0.46 TCGA-F7-7848-01 6 117629982 117629982 G A ROS1 Missense_Mutation p.P2182S 0.24 tolerated(0.71) benign(0.016) TCGA-F7-7848-01 6 119337960 119337960 A T FAM184A Silent p.I494I 0.14 TCGA-F7-7848-01 6 129621910 129621910 T A LAMA2 Missense_Mutation p.C1023S 0.30 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 6 129687473 129687473 G T LAMA2 Silent p.L1609L 0.35 TCGA-F7-7848-01 6 132022426 132022426 A T OR2A4 Missense_Mutation p.L39Q 0.23 deleterious(0) probably_damaging(0.954) TCGA-F7-7848-01 6 132059244 132059244 T C ENPP3 Silent p.S747S 0.28 TCGA-F7-7848-01 6 133846193 133846193 C G EYA4 Intron 0.26 TCGA-F7-7848-01 6 146625950 146625950 T C GRM1 Missense_Mutation p.L385P 0.29 tolerated(0.1) benign(0.005) TCGA-F7-7848-01 6 152551704 152551704 T G SYNE1 Missense_Mutation p.Q7058P 0.36 benign(0.167) TCGA-F7-7848-01 6 152652970 152652970 C A SYNE1 Missense_Mutation p.A4284S 0.28 benign(0.075) TCGA-F7-7848-01 6 154360660 154360660 C G OPRM1 Missense_Mutation p.A87G 0.27 tolerated_low_confidence(0.32) benign(0.001) TCGA-F7-7848-01 6 18148147 18148147 C G TPMT Splice_Site p.X47_splice 0.21 TCGA-F7-7848-01 6 22570038 22570038 G T HDGFL1 Silent p.G78G 0.33 TCGA-F7-7848-01 6 26107876 26107876 G T HIST1H1T Missense_Mutation p.T149N 0.26 tolerated(0.1) benign(0.261) TCGA-F7-7848-01 6 26423481 26423481 G A BTN2A3P RNA 0.31 TCGA-F7-7848-01 6 26452000 26452000 A T BTN3A3 Silent p.P372P 0.28 TCGA-F7-7848-01 6 29054757 29054757 T C OR2B3 Missense_Mutation p.K90R 0.23 tolerated(0.07) benign(0.049) TCGA-F7-7848-01 6 29364491 29364491 C G OR12D2 Silent p.T5T 0.22 TCGA-F7-7848-01 6 31540554 31540554 T G LTA Missense_Mutation p.V12G 0.23 deleterious(0) probably_damaging(0.994) TCGA-F7-7848-01 6 39874378 39874378 G A MOCS1 3'UTR 0.19 TCGA-F7-7848-01 6 41303865 41303865 G A NCR2 Silent p.V31V 0.19 TCGA-F7-7848-01 6 49580244 49580244 G T RHAG Missense_Mutation p.H271N 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-F7-7848-01 6 51768526 51768526 C T PKHD1 Splice_Site p.X2289_splice 0.28 TCGA-F7-7848-01 6 62442586 62442586 C A KHDRBS2 Splice_Site p.X298_splice 0.23 TCGA-F7-7848-01 6 66200507 66200507 T A EYS Missense_Mutation p.E281V 0.33 tolerated(0.32) benign(0.335) TCGA-F7-7848-01 6 83767585 83767585 T G UBE3D Silent p.G78G 0.38 TCGA-F7-7848-01 6 90660481 90660481 A G BACH2 Silent p.Y448Y 0.24 TCGA-F7-7848-01 6 97512561 97512561 C A KLHL32 Missense_Mutation p.L124M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-F7-7848-01 7 100484691 100484691 C - SRRT Frame_Shift_Del p.L616Cfs*59 0.18 TCGA-F7-7848-01 7 104377250 104377251 - T LHFPL3 Frame_Shift_Ins p.A193Gfs*20 0.25 TCGA-F7-7848-01 7 117251690 117251690 T A CFTR Silent p.L1065L 0.27 TCGA-F7-7848-01 7 119915618 119915618 G A KCND2 Missense_Mutation p.R311H 0.20 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 7 122759279 122759279 C T SLC13A1 Silent p.K456K 0.28 TCGA-F7-7848-01 7 123104904 123104904 C A IQUB Missense_Mutation p.V581F 0.32 deleterious(0) probably_damaging(0.966) TCGA-F7-7848-01 7 137308275 137308275 T C DGKI Missense_Mutation p.H277R 0.27 tolerated(0.13) probably_damaging(0.999) TCGA-F7-7848-01 7 137790055 137790055 G T AKR1D1 Silent p.A153A 0.28 TCGA-F7-7848-01 7 14216370 14216370 A G DGKB Intron 0.22 TCGA-F7-7848-01 7 142498885 142498885 T G TRBC2 Missense_Mutation p.S54R 0.12 tolerated(0.13) possibly_damaging(0.634) TCGA-F7-7848-01 7 142919874 142919874 A T TAS2R40 Missense_Mutation p.R235W 0.25 deleterious(0) benign(0.424) TCGA-F7-7848-01 7 150814821 150814821 C T AGAP3 Silent p.F221F 0.25 TCGA-F7-7848-01 7 155295635 155295635 G A CNPY1 3'UTR 0.62 TCGA-F7-7848-01 7 21627744 21627744 T A DNAH11 Missense_Mutation p.H591Q 0.24 benign(0.162) TCGA-F7-7848-01 7 26225198 26225198 G T NFE2L3 Missense_Mutation p.C627F 0.28 tolerated(0.28) benign(0.056) TCGA-F7-7848-01 7 34118705 34118705 C A BMPER Missense_Mutation p.R439S 0.22 deleterious(0) benign(0.373) TCGA-F7-7848-01 7 37264526 37264526 G T ELMO1 Missense_Mutation p.A220E 0.30 tolerated(1) probably_damaging(1) TCGA-F7-7848-01 7 40277269 40277269 G T SUGCT Missense_Mutation p.G181C 0.28 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 7 44184685 44184685 C A GCK 3'UTR 0.30 TCGA-F7-7848-01 7 45614759 45614759 A T ADCY1 Missense_Mutation p.K206M 0.26 tolerated(0.11) benign(0.062) TCGA-F7-7848-01 7 4825067 4825067 C A AP5Z1 Missense_Mutation p.S318Y 0.31 deleterious(0.01) possibly_damaging(0.785) TCGA-F7-7848-01 7 6731759 6731759 T A ZNF12 Missense_Mutation p.S272C 0.16 deleterious(0.04) possibly_damaging(0.676) TCGA-F7-7848-01 7 70255493 70255493 G C AUTS2 Missense_Mutation p.R1097S 0.50 deleterious(0.01) possibly_damaging(0.493) TCGA-F7-7848-01 7 82546068 82546068 G T PCLO Missense_Mutation p.T3745K 0.22 unknown(0) TCGA-F7-7848-01 7 83021872 83021872 T G SEMA3E Silent p.R556R 0.24 TCGA-F7-7848-01 7 87056134 87056134 A T ABCB4 Missense_Mutation p.S666T 0.26 tolerated(0.1) benign(0.058) TCGA-F7-7848-01 7 95775870 95775870 T C SLC25A13 Missense_Mutation p.K485E 0.27 deleterious(0) probably_damaging(0.949) TCGA-F7-7848-01 7 99787212 99787212 G T STAG3 Missense_Mutation p.R287L 0.23 deleterious(0) possibly_damaging(0.757) TCGA-F7-7848-01 8 103326146 103326146 T C UBR5 Splice_Site p.X632_splice 0.27 TCGA-F7-7848-01 8 10583720 10583720 C T SOX7 Missense_Mutation p.R284H 0.50 tolerated(0.6) benign(0.002) TCGA-F7-7848-01 8 113256715 113256715 G A CSMD3 Missense_Mutation p.T3437I 0.26 deleterious(0) probably_damaging(0.917) TCGA-F7-7848-01 8 113318355 113318355 C G CSMD3 Missense_Mutation p.G2651A 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-F7-7848-01 8 113569034 113569034 C A CSMD3 Missense_Mutation p.G1398W 0.21 deleterious(0) probably_damaging(1) TCGA-F7-7848-01 8 117782554 117782554 G T UTP23 Silent p.L104L 0.47 TCGA-F7-7848-01 8 132051742 132051742 C A ADCY8 Missense_Mutation p.A280S 0.16 tolerated(0.27) possibly_damaging(0.854) TCGA-F7-7848-01 8 134057291 134057291 C A SLA Missense_Mutation p.W181L 0.20 deleterious(0) probably_damaging(0.999) TCGA-F7-7848-01 8 144130634 144130634 C G C8orf31 Missense_Mutation p.R122G 0.49 deleterious_low_confidence(0) benign(0.433) TCGA-F7-7848-01 8 17206577 17206577 T C MTMR7 Missense_Mutation p.Y161C 0.38 deleterious(0.02) benign(0.041) TCGA-F7-7848-01 8 18079810 18079810 A T NAT1 Missense_Mutation p.E147V 0.37 deleterious(0.01) possibly_damaging(0.582) TCGA-F7-7848-01 8 29006204 29006204 G A KIF13B Missense_Mutation p.S568F 0.33 tolerated(0.24) benign(0.003) TCGA-F7-7848-01 8 54147356 54147356 G T OPRK1 Silent p.I191I 0.20 TCGA-F7-7848-01 8 61765575 61765575 C T CHD7 Silent p.D2097D 0.36 TCGA-F7-7848-01 8 70512983 70512983 G T SULF1 Nonsense_Mutation p.E294* 0.13 TCGA-F7-7848-01 8 77764098 77764098 G A ZFHX4 Silent p.Q1647Q 0.19 TCGA-F7-7848-01 8 82591364 82591364 T C IMPA1 Missense_Mutation p.H159R 0.40 deleterious(0.01) probably_damaging(0.973) TCGA-F7-7848-01 8 86351946 86351946 G T CA3 Missense_Mutation p.D14Y 0.07 deleterious(0.01) possibly_damaging(0.802) TCGA-F7-7848-01 8 92998530 92998530 C A RUNX1T1 Missense_Mutation p.M378I 0.37 deleterious(0) possibly_damaging(0.906) TCGA-F7-7848-01 8 97321822 97321822 C T PTDSS1 Missense_Mutation p.R349C 0.10 deleterious(0) probably_damaging(0.99) TCGA-F7-7848-01 9 104184091 104184091 C T ALDOB Silent p.%3D 0.40 TCGA-F7-7848-01 9 111970306 111970306 C T EPB41L4B Silent p.E592E 0.28 TCGA-F7-7848-01 9 113562629 113562629 C A MUSK Nonsense_Mutation p.Y657* 0.36 TCGA-F7-7848-01 9 125145892 125145892 G T PTGS1 Missense_Mutation p.E289D 0.48 deleterious(0.05) benign(0.068) TCGA-F7-7848-01 9 130476331 130476331 C T PTRH1 3'UTR 0.41 TCGA-F7-7848-01 9 136029278 136029278 T A GBGT1 Missense_Mutation p.R244W 0.39 deleterious(0.01) possibly_damaging(0.782) TCGA-F7-7848-01 9 26861107 26861107 G A CAAP1 Silent p.S232S 0.35 TCGA-F7-7848-01 9 34371481 34371481 G A KIAA1161 Silent p.S453S 0.22 TCGA-F7-7848-01 9 77442627 77442627 G C TRPM6 Intron 0.59 TCGA-F7-7848-01 9 80880327 80880327 A C CEP78 Silent p.S556S 0.56 TCGA-F7-7848-01 9 84531728 84531728 G C SPATA31D5P RNA 0.21 TCGA-F7-7848-01 9 8636759 8636759 G T PTPRD Missense_Mutation p.D50E 0.21 tolerated(0.28) possibly_damaging(0.86) TCGA-F7-7848-01 X 102931678 102931678 T A MORF4L2 Missense_Mutation p.E93V 0.55 tolerated(0.1) probably_damaging(0.93) TCGA-F7-7848-01 X 105168850 105168850 G T NRK Missense_Mutation p.A1048S 0.45 tolerated(0.32) benign(0.014) TCGA-F7-7848-01 X 123630881 123630881 C T TENM1 Missense_Mutation p.S1227N 0.37 tolerated(0.36) benign(0.003) TCGA-F7-7848-01 X 139865920 139865920 C T CDR1 Silent p.K204K 0.57 TCGA-F7-7848-01 X 15402172 15402172 A C FIGF 5'UTR 0.79 TCGA-F7-7848-01 X 28807464 28807464 A T IL1RAPL1 Nonsense_Mutation p.K2* 0.55 TCGA-F7-7848-01 X 30577959 30577959 G T CXorf21 Missense_Mutation p.Q172K 0.64 tolerated(0.93) benign(0.046) TCGA-F7-7848-01 X 31496420 31496420 C G DMD Missense_Mutation p.E2914Q 0.53 possibly_damaging(0.607) TCGA-F7-7848-01 X 32519917 32519917 C A DMD Missense_Mutation p.D779Y 0.53 probably_damaging(0.986) TCGA-F7-7848-01 X 35993268 35993268 T G CXorf22 Silent p.P753P 0.53 TCGA-F7-7848-01 X 37913470 37913470 C A SYTL5 Missense_Mutation p.L42M 0.50 deleterious(0.02) probably_damaging(0.927) TCGA-F7-7848-01 X 54785330 54785330 T C ITIH6 Missense_Mutation p.I393V 0.50 tolerated(0.05) benign(0.124) TCGA-F7-7848-01 X 56310806 56310806 A T KLF8 Missense_Mutation p.E320V 0.50 deleterious(0) possibly_damaging(0.451) TCGA-F7-7848-01 X 70026595 70026595 G T TEX11 Missense_Mutation p.Q233K 0.30 deleterious(0.01) benign(0.006) TCGA-F7-7848-01 X 70345277 70345277 G T MED12 Missense_Mutation p.R768L 0.41 probably_damaging(0.916) TCGA-F7-7848-01 X 70353025 70353025 A G MED12 Missense_Mutation p.Q1527R 0.62 benign(0.241) TCGA-F7-8298-01 10 121658273 121658273 A T SEC23IP Silent p.S166S 0.26 TCGA-F7-8298-01 10 13276216 13276216 C T UCMA Missense_Mutation p.V15M 0.15 tolerated(0.11) benign(0.049) TCGA-F7-8298-01 10 28272826 28272826 G A ARMC4 Silent p.H255H 0.23 TCGA-F7-8298-01 11 103780432 103780432 G T PDGFD Missense_Mutation p.P368Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-F7-8298-01 11 121477987 121477987 A G SORL1 Silent p.L1718L 0.32 TCGA-F7-8298-01 11 3140861 3140861 C G OSBPL5 Missense_Mutation p.G203R 0.44 deleterious(0.02) probably_damaging(1) TCGA-F7-8298-01 11 64663989 64663989 G A ATG2A Missense_Mutation p.S1791L 0.16 deleterious(0) benign(0.029) TCGA-F7-8298-01 11 67191929 67191929 G A CARNS1 Missense_Mutation p.E904K 0.35 tolerated(0.12) benign(0.003) TCGA-F7-8298-01 11 700673 700673 G C TMEM80 Silent p.L89L 0.37 TCGA-F7-8298-01 11 76751672 76751672 C T B3GNT6 Silent p.F359F 0.43 TCGA-F7-8298-01 11 92616509 92616509 G T FAT3 Missense_Mutation p.R4296L 0.27 possibly_damaging(0.652) TCGA-F7-8298-01 12 104182618 104182618 G A NT5DC3 Nonsense_Mutation p.Q367* 0.24 TCGA-F7-8298-01 12 122845691 122845691 G T CLIP1 Missense_Mutation p.P274T 0.07 deleterious(0) probably_damaging(0.999) TCGA-F7-8298-01 12 52913804 52913804 C T KRT5 Missense_Mutation p.G93S 0.12 tolerated(0.25) benign(0.015) TCGA-F7-8298-01 12 58158164 58158164 A T CYP27B1 Missense_Mutation p.L378Q 0.27 deleterious(0) probably_damaging(1) TCGA-F7-8298-01 12 6972528 6972528 C T USP5 Silent p.F647F 0.31 TCGA-F7-8298-01 13 38172859 38172859 A G POSTN Missense_Mutation p.I2T 0.29 tolerated_low_confidence(0.08) unknown(0) TCGA-F7-8298-01 13 52439891 52439891 G A CCDC70 Missense_Mutation p.R126H 0.57 tolerated(0.23) benign(0.032) TCGA-F7-8298-01 13 53421330 53421330 G C PCDH8 Silent p.V414V 0.30 TCGA-F7-8298-01 14 20666183 20666183 G T OR11G2 Missense_Mutation p.G230V 0.26 tolerated(0.2) benign(0) TCGA-F7-8298-01 14 23851205 23851205 C G MYH6 3'UTR 0.28 TCGA-F7-8298-01 14 33290907 33290907 C G AKAP6 Silent p.L1296L 0.17 TCGA-F7-8298-01 14 55848868 55848868 G T ATG14 Missense_Mutation p.T230N 0.23 deleterious(0.03) possibly_damaging(0.76) TCGA-F7-8298-01 14 67790455 67790456 - A MPP5 Nonsense_Mutation p.Y593* 0.18 TCGA-F7-8298-01 15 101833232 101833232 T C SNRPA1 Missense_Mutation p.I76M 0.20 deleterious(0) possibly_damaging(0.885) TCGA-F7-8298-01 15 28408307 28408307 C T HERC2 Missense_Mutation p.R3560Q 0.32 probably_damaging(0.97) TCGA-F7-8298-01 15 32460294 32460294 G A CHRNA7 Missense_Mutation p.G411R 0.13 tolerated(0.13) benign(0.117) TCGA-F7-8298-01 15 33923445 33923445 G C RYR3 Missense_Mutation p.V940L 0.60 benign(0.024) TCGA-F7-8298-01 15 43641280 43641280 C T ADAL Intron 0.30 TCGA-F7-8298-01 15 43701117 43701117 C T TP53BP1 Missense_Mutation p.E1860K 0.17 deleterious(0.02) benign(0.373) TCGA-F7-8298-01 15 74315250 74315252 CAT - PML In_Frame_Del p.I229del 0.12 TCGA-F7-8298-01 15 90784831 90784831 G C GDPGP1 Missense_Mutation p.E231Q 0.20 deleterious(0) probably_damaging(0.923) TCGA-F7-8298-01 16 11647526 11647526 G A LITAF Silent p.Y80Y 0.22 TCGA-F7-8298-01 16 1823374 1823374 G C EME2 Missense_Mutation p.R49T 0.19 tolerated(0.12) benign(0.005) TCGA-F7-8298-01 16 1828155 1828155 G C SPSB3 Missense_Mutation p.P158A 0.09 tolerated(0.11) probably_damaging(0.968) TCGA-F7-8298-01 16 56419833 56419833 T C AMFR Missense_Mutation p.M460V 0.35 deleterious(0) possibly_damaging(0.908) TCGA-F7-8298-01 16 56704927 56704927 G A MT1H 3'UTR 0.30 TCGA-F7-8298-01 16 58230691 58230691 T C CSNK2A2 Silent p.V54V 0.27 TCGA-F7-8298-01 16 87723299 87723299 G C JPH3 Missense_Mutation p.E445Q 0.24 deleterious(0.01) possibly_damaging(0.686) TCGA-F7-8298-01 17 17783000 17783000 C G TOM1L2 Missense_Mutation p.E240Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-F7-8298-01 17 26691519 26691519 G T VTN 3'Flank 0.32 TCGA-F7-8298-01 17 26881880 26881880 C T PIGS Missense_Mutation p.V461M 0.19 deleterious(0) probably_damaging(0.954) TCGA-F7-8298-01 17 38418792 38418792 G C WIPF2 Missense_Mutation p.S71T 0.21 deleterious(0.03) benign(0.07) TCGA-F7-8298-01 17 41601271 41601271 C T DHX8 3'UTR 0.21 TCGA-F7-8298-01 17 57725621 57725621 T A CLTC Silent p.A180A 0.29 TCGA-F7-8298-01 17 7578237 7578261 CTCCACACGCAAATTTCCTTCCACT - TP53 Frame_Shift_Del p.V197Ifs*42 0.55 TCGA-F7-8298-01 18 14763781 14763781 C T ANKRD30B Missense_Mutation p.A306V 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-F7-8298-01 18 32409029 32409029 C A DTNA Intron 0.17 TCGA-F7-8298-01 18 74092152 74092152 C T ZNF516 Missense_Mutation p.G640S 0.63 tolerated(1) benign(0.01) TCGA-F7-8298-01 19 12595607 12595607 G A ZNF709 5'UTR 0.22 TCGA-F7-8298-01 19 14031662 14031662 A G CC2D1A Missense_Mutation p.H523R 0.28 deleterious(0.02) benign(0.397) TCGA-F7-8298-01 19 18710430 18710430 G A CRLF1 Silent p.L114L 0.27 TCGA-F7-8298-01 19 2877960 2877960 G C ZNF556 Missense_Mutation p.R335T 0.26 deleterious(0.02) possibly_damaging(0.677) TCGA-F7-8298-01 19 2878121 2878121 G C ZNF556 Missense_Mutation p.E389Q 0.32 tolerated(0.05) possibly_damaging(0.718) TCGA-F7-8298-01 19 4054738 4054738 G A ZBTB7A Nonsense_Mutation p.Q165* 0.24 TCGA-F7-8298-01 19 53270632 53270632 C A ZNF600 Missense_Mutation p.R126I 0.17 tolerated(0.09) possibly_damaging(0.467) TCGA-F7-8298-01 1 110596695 110596695 G C STRIP1 3'UTR 0.31 TCGA-F7-8298-01 1 114516302 114516302 C T HIPK1 3'UTR 0.25 TCGA-F7-8298-01 1 151655871 151655871 G C SNX27 Missense_Mutation p.E397Q 0.25 tolerated(0.23) benign(0.004) TCGA-F7-8298-01 1 154407131 154407131 G A IL6R Missense_Mutation p.G199R 0.28 deleterious(0) probably_damaging(0.998) TCGA-F7-8298-01 1 169676535 169676535 A G SELL Silent p.N189N 0.39 TCGA-F7-8298-01 1 197313479 197313479 G A CRB1 Missense_Mutation p.D241N 0.27 tolerated(0.15) probably_damaging(0.999) TCGA-F7-8298-01 1 204170913 204170913 G A GOLT1A Silent p.L48L 0.07 TCGA-F7-8298-01 1 228284873 228284873 A T ARF1 Missense_Mutation p.I20F 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.661) TCGA-F7-8298-01 1 240256594 240256594 T C FMN2 Silent p.A395A 0.23 TCGA-F7-8298-01 1 248343760 248343760 T C OR2M2 Missense_Mutation p.I158T 0.40 deleterious(0.02) possibly_damaging(0.461) TCGA-F7-8298-01 1 31532106 31532106 T C PUM1 Missense_Mutation p.Y103C 0.43 tolerated_low_confidence(0.35) benign(0.187) TCGA-F7-8298-01 1 55349376 55349376 G C DHCR24 Nonsense_Mutation p.S101* 0.22 TCGA-F7-8298-01 1 57173370 57173370 C T PRKAA2 Missense_Mutation p.T548I 0.05 tolerated(0.28) benign(0.027) TCGA-F7-8298-01 1 89849796 89849796 G C GBP6 Missense_Mutation p.R538T 0.15 deleterious(0.03) benign(0.207) TCGA-F7-8298-01 20 43129059 43129059 G C SERINC3 Missense_Mutation p.Q434E 0.50 tolerated(0.57) benign(0.338) TCGA-F7-8298-01 20 55012466 55012466 G C CASS4 Missense_Mutation p.E95Q 0.30 tolerated(0.94) benign(0.001) TCGA-F7-8298-01 20 60989073 60989073 G C RBBP8NL Missense_Mutation p.S445W 0.24 deleterious(0) probably_damaging(1) TCGA-F7-8298-01 20 62153240 62153240 G A PPDPF 3'UTR 0.24 TCGA-F7-8298-01 21 34050994 34050994 C G SYNJ1 Missense_Mutation p.D530H 0.32 deleterious(0) probably_damaging(1) TCGA-F7-8298-01 2 10581790 10581790 G A ODC1 Silent p.G362G 0.12 TCGA-F7-8298-01 2 141533765 141533765 C A LRP1B Missense_Mutation p.G1801V 0.19 probably_damaging(0.953) TCGA-F7-8298-01 2 63092010 63092010 C G EHBP1 Missense_Mutation p.P336R 0.39 deleterious(0) probably_damaging(0.953) TCGA-F7-8298-01 2 88396193 88396193 G A SMYD1 Missense_Mutation p.E260K 0.16 tolerated(0.32) benign(0.002) TCGA-F7-8298-01 2 97365786 97365786 T C FER1L5 RNA 0.30 TCGA-F7-8298-01 3 100447693 100447693 C A TFG Missense_Mutation p.P136T 0.20 deleterious(0.02) benign(0.04) TCGA-F7-8298-01 3 1189608 1189608 C T CNTN6 Intron 0.44 TCGA-F7-8298-01 3 123633990 123633990 G C CCDC14 Missense_Mutation p.S792C 0.48 deleterious(0.02) probably_damaging(0.938) TCGA-F7-8298-01 3 129168739 129168739 G A IFT122 Missense_Mutation p.D23N 0.17 deleterious(0) probably_damaging(0.995) TCGA-F7-8298-01 3 133099441 133099441 G T TMEM108 Missense_Mutation p.G296W 0.21 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-F7-8298-01 3 167189421 167189421 G T SERPINI2 Missense_Mutation p.Q68K 0.27 tolerated(0.19) benign(0.119) TCGA-F7-8298-01 3 50293708 50293708 G A GNAI2 Silent p.T183T 0.44 TCGA-F7-8298-01 4 120079303 120079303 C T MYOZ2 Missense_Mutation p.P125S 0.57 tolerated(0.06) probably_damaging(0.951) TCGA-F7-8298-01 4 149035254 149035254 C T NR3C2 Splice_Site p.X933_splice 0.61 TCGA-F7-8298-01 4 38776690 38776690 G C TLR10 Missense_Mutation p.F174L 0.30 tolerated(1) benign(0) TCGA-F7-8298-01 5 140181292 140181292 C A PCDHA3 Nonsense_Mutation p.Y170* 0.50 TCGA-F7-8298-01 5 151266315 151266315 G C GLRA1 Missense_Mutation p.I73M 0.57 deleterious(0) probably_damaging(0.982) TCGA-F7-8298-01 5 35709194 35709194 C A SPEF2 Missense_Mutation p.T937N 0.07 tolerated(0.13) possibly_damaging(0.674) TCGA-F7-8298-01 5 37293006 37293006 G C NUP155 Missense_Mutation p.P1338A 0.22 tolerated(0.07) benign(0.443) TCGA-F7-8298-01 5 45262258 45262258 G T HCN1 Missense_Mutation p.A813D 0.16 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-F7-8298-01 5 76703264 76703264 C T PDE8B Silent p.I449I 0.47 TCGA-F7-8298-01 6 10400743 10400743 G A TFAP2A Silent p.L321L 0.24 TCGA-F7-8298-01 6 128222151 128222151 T A THEMIS 5'UTR 0.51 TCGA-F7-8298-01 6 36454708 36454708 C T KCTD20 Missense_Mutation p.S339F 0.27 tolerated(0.14) probably_damaging(0.938) TCGA-F7-8298-01 6 38890888 38890888 C G DNAH8 Missense_Mutation p.L3356V 0.29 probably_damaging(0.955) TCGA-F7-8298-01 6 76380320 76380320 C G SENP6 Missense_Mutation p.Q426E 0.68 tolerated(0.08) benign(0.05) TCGA-F7-8298-01 7 122303468 122303468 C G CADPS2 Missense_Mutation p.W203C 0.44 deleterious(0) probably_damaging(0.968) TCGA-F7-8298-01 7 139876567 139876567 G C KDM7A Missense_Mutation p.I57M 0.16 tolerated(0.17) possibly_damaging(0.818) TCGA-F7-8298-01 7 150731831 150731831 A T ABCB8 Missense_Mutation p.D227V 0.41 deleterious(0) probably_damaging(0.995) TCGA-F7-8298-01 7 82072683 82072683 G A CACNA2D1 Silent p.V31V 0.15 TCGA-F7-8298-01 7 96653736 96653736 C G DLX5 Missense_Mutation p.G67A 0.19 tolerated(0.24) benign(0.009) TCGA-F7-8298-01 8 103573226 103573226 G C ODF1 3'Flank 0.22 TCGA-F7-8298-01 8 105025701 105025701 C G RIMS2 Missense_Mutation p.H1026D 0.23 tolerated_low_confidence(0.13) benign(0.062) TCGA-F7-8298-01 8 113420545 113420545 A T CSMD3 Splice_Site p.X1869_splice 0.24 TCGA-F7-8298-01 8 48650481 48650481 T C CEBPD Missense_Mutation p.M68V 0.21 tolerated(0.1) possibly_damaging(0.678) TCGA-F7-8298-01 8 63492114 63492114 G A NKAIN3 Missense_Mutation p.R24K 0.17 deleterious(0) probably_damaging(0.997) TCGA-F7-8298-01 8 68255718 68255718 G A ARFGEF1 5'UTR 0.23 TCGA-F7-8298-01 9 112930707 112930707 G A PALM2-AKAP2 Missense_Mutation p.R1081K 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-F7-8298-01 9 215080 215080 G A C9orf66 Missense_Mutation p.T106I 0.42 tolerated_low_confidence(0.08) benign(0.014) TCGA-F7-8298-01 9 35075012 35075012 G C FANCG Silent p.A516A 0.72 TCGA-F7-8298-01 9 4117860 4117860 C T GLIS3 Missense_Mutation p.G540S 0.28 deleterious(0) probably_damaging(0.998) TCGA-F7-8298-01 9 91978722 91978722 G A SECISBP2 3'Flank 0.34 TCGA-F7-8298-01 X 102564538 102564538 C G BEX2 Missense_Mutation p.E155Q 0.41 deleterious(0) probably_damaging(0.948) TCGA-F7-8298-01 X 102564629 102564629 C T BEX2 Silent p.V124V 0.53 TCGA-F7-8298-01 X 108785890 108785890 C T NXT2 Silent p.F189F 0.42 TCGA-F7-8298-01 X 129205043 129205043 T A ELF4 Missense_Mutation p.N261Y 0.50 deleterious(0) probably_damaging(0.995) TCGA-F7-8298-01 X 31196907 31196907 C T DMD Missense_Mutation p.D3368N 0.47 possibly_damaging(0.728) TCGA-F7-8298-01 X 70832382 70832382 A G ACRC Missense_Mutation p.H643R 0.58 unknown(0) TCGA-F7-8489-01 10 119307742 119307742 A G EMX2 Silent p.%3D 0.21 TCGA-F7-8489-01 10 129906285 129906285 G A MKI67 Silent p.I1273I 0.16 TCGA-F7-8489-01 10 13658406 13658406 T C RP11-295P9.3 Silent p.D144D 0.10 TCGA-F7-8489-01 10 38344133 38344133 G C ZNF33A Missense_Mutation p.E361Q 0.15 tolerated(0.14) benign(0.003) TCGA-F7-8489-01 10 390850 390850 G T DIP2C Missense_Mutation p.P1118T 0.30 tolerated(0.08) probably_damaging(0.932) TCGA-F7-8489-01 10 44876325 44876325 T A CXCL12 Missense_Mutation p.K22M 0.04 deleterious(0) probably_damaging(0.999) TCGA-F7-8489-01 10 70958211 70958211 C T SUPV3L1 Silent p.C369C 0.06 TCGA-F7-8489-01 10 84745220 84745220 C T NRG3 Silent p.Y650Y 0.16 TCGA-F7-8489-01 11 123676215 123676215 G A OR6M1 Silent p.L281L 0.16 TCGA-F7-8489-01 11 26734222 26734222 C A SLC5A12 Missense_Mutation p.R124L 0.04 deleterious(0) probably_damaging(1) TCGA-F7-8489-01 11 43333735 43333735 C T API5 Nonsense_Mutation p.Q20* 0.16 TCGA-F7-8489-01 11 55579540 55579540 T A OR5L1 Missense_Mutation p.F200I 0.10 deleterious(0) possibly_damaging(0.467) TCGA-F7-8489-01 11 55761495 55761495 C G OR5F1 Missense_Mutation p.A203P 0.06 deleterious(0) probably_damaging(0.983) TCGA-F7-8489-01 11 57995998 57995998 A C OR10Q1 Missense_Mutation p.F117C 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-F7-8489-01 11 621408 621408 C T CDHR5 Silent p.L185L 0.12 TCGA-F7-8489-01 11 63996766 63996766 C T NUDT22 Silent p.I209I 0.20 TCGA-F7-8489-01 11 65810593 65810593 G T GAL3ST3 Silent p.L227L 0.20 TCGA-F7-8489-01 11 6593057 6593057 C A DNHD1 Missense_Mutation p.D4701E 0.10 benign(0.001) TCGA-F7-8489-01 11 67957513 67957513 C T SUV420H1 Missense_Mutation p.V11M 0.13 deleterious(0) probably_damaging(0.999) TCGA-F7-8489-01 11 6816047 6816047 C T OR6A2 Missense_Mutation p.R298H 0.08 deleterious(0) benign(0.028) TCGA-F7-8489-01 11 70224369 70224369 A G PPFIA1 Intron 0.10 TCGA-F7-8489-01 11 74559263 74559263 C G XRRA1 Missense_Mutation p.S534T 0.22 tolerated(0.15) benign(0.05) TCGA-F7-8489-01 11 7690521 7690522 - T CYB5R2 Frame_Shift_Ins p.M102Dfs*40 0.12 TCGA-F7-8489-01 12 102020655 102020655 G A MYBPC1 Intron 0.09 TCGA-F7-8489-01 12 1039024 1039024 G C RAD52 Missense_Mutation p.F103L 0.14 deleterious(0.02) probably_damaging(0.967) TCGA-F7-8489-01 12 120636428 120636428 C T RPLP0 Missense_Mutation p.D194N 0.10 deleterious(0.03) benign(0.198) TCGA-F7-8489-01 12 132405861 132405861 C T ULK1 Silent p.C1036C 0.06 TCGA-F7-8489-01 12 1940653 1940653 G A LRTM2 Missense_Mutation p.R207H 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-F7-8489-01 12 46756292 46756292 T C SLC38A2 Missense_Mutation p.I437V 0.18 tolerated(0.16) benign(0.268) TCGA-F7-8489-01 12 48888659 48888659 A G C12orf54 Silent p.G107G 0.13 TCGA-F7-8489-01 12 56334184 56334184 G T DGKA Silent p.L295L 0.08 TCGA-F7-8489-01 12 57556243 57556243 G T LRP1 Silent p.L782L 0.10 TCGA-F7-8489-01 12 57605075 57605075 A - LRP1 Frame_Shift_Del p.S4345Afs*31 0.13 TCGA-F7-8489-01 13 25479735 25479735 C T CENPJ Missense_Mutation p.G814E 0.06 tolerated(0.43) benign(0.02) TCGA-F7-8489-01 13 52585517 52585517 C A ATP7B 5'UTR 0.09 TCGA-F7-8489-01 13 61986011 61986011 G T PCDH20 Missense_Mutation p.L741I 0.15 tolerated(0.48) benign(0.01) TCGA-F7-8489-01 14 102516442 102516442 C T DYNC1H1 Silent p.N4573N 0.16 TCGA-F7-8489-01 14 21971906 21971906 A T METTL3 Silent p.A73A 0.10 TCGA-F7-8489-01 14 65198159 65198159 C T PLEKHG3 Silent p.R254R 0.15 TCGA-F7-8489-01 14 94156479 94156479 G T UNC79 Nonsense_Mutation p.E2230* 0.14 TCGA-F7-8489-01 15 25463924 25463924 C A SNORD115-28 5'Flank 0.08 TCGA-F7-8489-01 15 28408263 28408263 C T HERC2 Missense_Mutation p.G3575S 0.16 benign(0.099) TCGA-F7-8489-01 15 29346522 29346522 G A APBA2 Silent p.A145A 0.14 TCGA-F7-8489-01 15 41602007 41602007 G A OIP5 Missense_Mutation p.S212L 0.06 tolerated(0.7) benign(0.015) TCGA-F7-8489-01 15 58471425 58471425 C T AQP9 Silent p.L198L 0.11 TCGA-F7-8489-01 15 99434613 99434613 G A IGF1R Missense_Mutation p.E234K 0.14 tolerated(0.1) possibly_damaging(0.692) TCGA-F7-8489-01 16 1550120 1550120 G T TELO2 Silent p.L319L 0.18 TCGA-F7-8489-01 16 4934533 4934533 T A PPL Missense_Mutation p.I1375F 0.10 deleterious(0) probably_damaging(0.997) TCGA-F7-8489-01 16 57785854 57785854 C G KATNB1 Silent p.L173L 0.20 TCGA-F7-8489-01 16 67327850 67327850 A G KCTD19 Silent p.P605P 0.08 TCGA-F7-8489-01 16 67327851 67327851 G T KCTD19 Missense_Mutation p.P605H 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-F7-8489-01 16 74949788 74949788 T C WDR59 Missense_Mutation p.I402V 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-F7-8489-01 16 85948094 85948094 C T IRF8 Missense_Mutation p.T190M 0.08 tolerated(0.2) benign(0.012) TCGA-F7-8489-01 17 10446477 10446477 C A MYH2 Missense_Mutation p.G248V 0.08 deleterious(0) possibly_damaging(0.7) TCGA-F7-8489-01 17 12032584 12032584 C T MAP2K4 Silent p.F340F 0.21 TCGA-F7-8489-01 17 17788011 17788011 C T TOM1L2 Silent p.R146R 0.12 TCGA-F7-8489-01 17 61571289 61571289 A T ACE Missense_Mutation p.D1048V 0.06 tolerated(0.07) probably_damaging(0.961) TCGA-F7-8489-01 17 66987079 66987079 C G ABCA9 Missense_Mutation p.A1246P 0.12 tolerated(0.16) benign(0.002) TCGA-F7-8489-01 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.17 deleterious(0) probably_damaging(0.999) TCGA-F7-8489-01 17 7612679 7612679 G A EFNB3 Missense_Mutation p.G270R 0.25 deleterious(0.01) possibly_damaging(0.807) TCGA-F7-8489-01 17 7636499 7636499 G A DNAH2 Missense_Mutation p.G165D 0.17 benign(0.033) TCGA-F7-8489-01 18 24441157 24441157 C G AQP4 Missense_Mutation p.D184H 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-F7-8489-01 18 2728467 2728467 G A SMCHD1 Missense_Mutation p.R929Q 0.12 tolerated(0.58) benign(0.001) TCGA-F7-8489-01 18 6859811 6859811 A G ARHGAP28 Missense_Mutation p.D55G 0.06 tolerated(0.2) benign(0.004) TCGA-F7-8489-01 18 70205525 70205525 G A CBLN2 Silent p.G187G 0.17 TCGA-F7-8489-01 18 9887859 9887859 A T TXNDC2 Silent p.A461A 0.14 TCGA-F7-8489-01 19 1005279 1005279 C T GRIN3B Silent p.T593T 0.14 TCGA-F7-8489-01 19 14034231 14034231 A G CC2D1A Missense_Mutation p.Y576C 0.09 deleterious(0) probably_damaging(0.945) TCGA-F7-8489-01 19 19120694 19120694 G A SUGP2 Nonsense_Mutation p.Q770* 0.06 TCGA-F7-8489-01 19 34791586 34791586 A C KIAA0355 Missense_Mutation p.T70P 0.15 tolerated_low_confidence(0.05) benign(0.029) TCGA-F7-8489-01 19 362245 362246 - G THEG Frame_Shift_Ins p.A367Sfs*7 0.08 TCGA-F7-8489-01 19 37211472 37211472 C T ZNF567 Missense_Mutation p.P585S 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-F7-8489-01 19 40392183 40392183 G A FCGBP Nonsense_Mutation p.Q2735* 0.13 TCGA-F7-8489-01 19 49967959 49967959 A T ALDH16A1 Missense_Mutation p.Y503F 0.11 tolerated(0.39) probably_damaging(0.926) TCGA-F7-8489-01 19 53269576 53269576 G C ZNF600 Missense_Mutation p.A478G 0.07 tolerated(0.11) possibly_damaging(0.579) TCGA-F7-8489-01 19 9324827 9324827 G A OR7D4 Silent p.S229S 0.05 TCGA-F7-8489-01 1 112997128 112997128 G A CTTNBP2NL Missense_Mutation p.D130N 0.23 tolerated(0.1) probably_damaging(1) TCGA-F7-8489-01 1 117122188 117122188 G A IGSF3 Missense_Mutation p.R1074C 0.17 deleterious(0.02) benign(0.028) TCGA-F7-8489-01 1 147380410 147380410 G A GJA8 Missense_Mutation p.E110K 0.19 deleterious(0.05) benign(0.072) TCGA-F7-8489-01 1 153659489 153659489 C T NPR1 Intron 0.11 TCGA-F7-8489-01 1 160990934 160990934 G A F11R 5'UTR 0.19 TCGA-F7-8489-01 1 175097823 175097823 G A TNN Missense_Mutation p.D1091N 0.09 tolerated(0.08) possibly_damaging(0.527) TCGA-F7-8489-01 1 193028508 193028508 C T UCHL5 5'UTR 0.12 TCGA-F7-8489-01 1 207297268 207297268 T C C4BPA Missense_Mutation p.F144L 0.21 deleterious(0) benign(0.105) TCGA-F7-8489-01 1 232561533 232561533 A G SIPA1L2 Missense_Mutation p.S1478P 0.14 tolerated(0.17) probably_damaging(0.999) TCGA-F7-8489-01 1 241099995 241099995 G T RGS7 Missense_Mutation p.H80N 0.11 tolerated(0.11) probably_damaging(0.946) TCGA-F7-8489-01 1 26609384 26609384 C T UBXN11 Silent p.E374E 0.20 TCGA-F7-8489-01 1 28858316 28858316 C T RCC1 Silent p.V56V 0.22 TCGA-F7-8489-01 1 45797745 45797745 T A MUTYH Missense_Mutation p.Q313L 0.09 tolerated(0.4) benign(0.001) TCGA-F7-8489-01 1 57254645 57254645 C A C1orf168 Splice_Site p.X307_splice 0.06 TCGA-F7-8489-01 1 63113907 63113907 G A DOCK7 Missense_Mutation p.S201L 0.08 tolerated(0.54) benign(0.015) TCGA-F7-8489-01 1 70504892 70504892 C T LRRC7 Missense_Mutation p.P1091S 0.07 tolerated(0.29) probably_damaging(0.998) TCGA-F7-8489-01 1 79383343 79383343 T A ELTD1 Silent p.I575I 0.11 TCGA-F7-8489-01 20 44515173 44515173 G A SPATA25 Missense_Mutation p.P223S 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-F7-8489-01 21 38853090 38853090 G C DYRK1A Missense_Mutation p.E160Q 0.17 deleterious(0.03) benign(0.301) TCGA-F7-8489-01 22 22035640 22035640 C T PPIL2 Silent p.I116I 0.10 TCGA-F7-8489-01 22 22453465 22453465 C T IGLV8-61 Missense_Mutation p.R71C 0.06 deleterious(0.01) benign(0.072) TCGA-F7-8489-01 22 42912067 42912067 C G RRP7A Missense_Mutation p.E98Q 0.15 tolerated(0.16) benign(0.01) TCGA-F7-8489-01 2 108455272 108455272 C T RGPD4 Missense_Mutation p.S86L 0.30 deleterious(0) possibly_damaging(0.849) TCGA-F7-8489-01 2 121999932 121999932 C T TFCP2L1 Intron 0.13 TCGA-F7-8489-01 2 131812999 131812999 C T FAM168B Silent p.P107P 0.09 TCGA-F7-8489-01 2 209195278 209195278 G C PIKFYVE Missense_Mutation p.D1275H 0.07 deleterious(0.01) possibly_damaging(0.67) TCGA-F7-8489-01 2 211471660 211471660 C T CPS1 Silent p.A735A 0.09 TCGA-F7-8489-01 2 231943413 231943413 T C PSMD1 Missense_Mutation p.I371T 0.17 deleterious(0.02) benign(0.015) TCGA-F7-8489-01 2 58392999 58392999 A G FANCL Missense_Mutation p.I189T 0.09 tolerated(0.56) benign(0.003) TCGA-F7-8489-01 2 75891820 75891820 T C GCFC2 Missense_Mutation p.H773R 0.15 deleterious(0.03) benign(0.081) TCGA-F7-8489-01 2 9725446 9725446 T A YWHAQ Missense_Mutation p.E236V 0.07 deleterious_low_confidence(0.02) unknown(0) TCGA-F7-8489-01 2 9725447 9725447 C A YWHAQ Nonsense_Mutation p.E236* 0.07 TCGA-F7-8489-01 3 101476833 101476833 G A CEP97 Silent p.E461E 0.14 TCGA-F7-8489-01 3 105290756 105290756 A C ALCAM Missense_Mutation p.E575D 0.23 deleterious(0.01) unknown(0) TCGA-F7-8489-01 3 108373044 108373044 C T DZIP3 Missense_Mutation p.H696Y 0.13 tolerated_low_confidence(0.31) benign(0) TCGA-F7-8489-01 3 123047530 123047530 A G ADCY5 Missense_Mutation p.V589A 0.04 deleterious(0) probably_damaging(1) TCGA-F7-8489-01 3 140401726 140401726 G A TRIM42 Missense_Mutation p.R255H 0.11 tolerated(0.16) benign(0.037) TCGA-F7-8489-01 3 150416662 150416662 G T FAM194A Missense_Mutation p.H157N 0.10 tolerated(0.22) benign(0) TCGA-F7-8489-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.24 tolerated(0.11) possibly_damaging(0.529) TCGA-F7-8489-01 3 179526100 179526100 G A PEX5L Missense_Mutation p.A493V 0.08 deleterious(0) probably_damaging(0.999) TCGA-F7-8489-01 3 179526101 179526101 C A PEX5L Missense_Mutation p.A493S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-F7-8489-01 3 185823132 185823132 T A ETV5 Missense_Mutation p.D65V 0.25 deleterious(0) probably_damaging(0.994) TCGA-F7-8489-01 3 193082032 193082032 G A ATP13A5 Missense_Mutation p.A34V 0.04 tolerated(0.24) benign(0.057) TCGA-F7-8489-01 3 30713505 30713505 A T TGFBR2 Missense_Mutation p.K302M 0.10 deleterious(0) probably_damaging(1) TCGA-F7-8489-01 3 38753872 38753872 A G SCN10A Missense_Mutation p.I1290T 0.13 deleterious(0.02) probably_damaging(1) TCGA-F7-8489-01 3 9991651 9991651 G A PRRT3 Missense_Mutation p.S50F 0.07 deleterious_low_confidence(0) benign(0.101) TCGA-F7-8489-01 4 100341898 100341898 G C ADH7 Nonsense_Mutation p.S226* 0.08 TCGA-F7-8489-01 4 111397683 111397683 G T ENPEP Missense_Mutation p.G38V 0.08 deleterious(0.02) probably_damaging(1) TCGA-F7-8489-01 4 141555229 141555229 T C TBC1D9 Silent p.G873G 0.09 TCGA-F7-8489-01 4 187542091 187542092 - A FAT1 Frame_Shift_Ins p.L1883Ffs*3 0.08 TCGA-F7-8489-01 4 42965095 42965095 C G GRXCR1 Missense_Mutation p.R191G 0.10 tolerated(0.09) possibly_damaging(0.594) TCGA-F7-8489-01 4 46099269 46099269 G C GABRG1 Missense_Mutation p.L68V 0.21 deleterious(0) probably_damaging(0.994) TCGA-F7-8489-01 4 4864658 4864658 G - MSX1 Frame_Shift_Del p.E234Sfs*5 0.13 TCGA-F7-8489-01 4 72316247 72316247 T G SLC4A4 Missense_Mutation p.S399A 0.11 deleterious(0) benign(0.391) TCGA-F7-8489-01 4 96762006 96762006 A T PDHA2 Silent p.A235A 0.09 TCGA-F7-8489-01 5 140187979 140187979 A T PCDHA4 Missense_Mutation p.N403Y 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F7-8489-01 5 140256720 140256720 G A PCDHA12 Missense_Mutation p.V555M 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F7-8489-01 5 140481867 140481867 C T PCDHB3 Missense_Mutation p.A545V 0.11 tolerated_low_confidence(0.07) benign(0.306) TCGA-F7-8489-01 5 140589637 140589637 G A PCDHB12 Silent p.P386P 0.20 TCGA-F7-8489-01 5 140764776 140764776 C G PCDHGA7 Missense_Mutation p.F770L 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.452) TCGA-F7-8489-01 5 145439539 145439539 C G SH3RF2 Missense_Mutation p.P556A 0.07 tolerated(0.07) benign(0.018) TCGA-F7-8489-01 5 150422486 150422486 G A TNIP1 Missense_Mutation p.R325W 0.17 deleterious(0) probably_damaging(0.999) TCGA-F7-8489-01 5 66458515 66458515 G A MAST4 Missense_Mutation p.R1289K 0.13 possibly_damaging(0.857) TCGA-F7-8489-01 5 68669856 68669856 C T RAD17 Missense_Mutation p.S81L 0.09 tolerated(0.1) benign(0.001) TCGA-F7-8489-01 5 82843857 82843857 C T VCAN Silent p.F3149F 0.13 TCGA-F7-8489-01 5 93076263 93076263 G A POU5F2 3'UTR 0.10 TCGA-F7-8489-01 6 111643869 111643869 T C REV3L Missense_Mutation p.I2752V 0.15 tolerated(0.31) probably_damaging(0.998) TCGA-F7-8489-01 6 112512863 112512863 G A LAMA4 Silent p.D231D 0.12 TCGA-F7-8489-01 6 132859943 132859943 C G TAAR9 Missense_Mutation p.A172G 0.05 tolerated(0.1) benign(0.342) TCGA-F7-8489-01 6 144507870 144507870 G A STX11 Missense_Mutation p.E36K 0.11 deleterious(0.01) possibly_damaging(0.844) TCGA-F7-8489-01 6 24716392 24716392 T C C6orf62 Missense_Mutation p.Y97C 0.17 deleterious(0) possibly_damaging(0.906) TCGA-F7-8489-01 6 26413558 26413558 A G BTN3A1 Missense_Mutation p.R394G 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-F7-8489-01 6 43581625 43581625 G C POLH Missense_Mutation p.Q491H 0.19 tolerated(0.06) benign(0.031) TCGA-F7-8489-01 6 56483632 56483632 G T DST Intron 0.22 TCGA-F7-8489-01 6 71501407 71501407 G C SMAP1 Missense_Mutation p.A144P 0.13 tolerated(0.06) benign(0.019) TCGA-F7-8489-01 6 79655791 79655791 C A PHIP Missense_Mutation p.E1519D 0.15 tolerated_low_confidence(0.21) probably_damaging(0.97) TCGA-F7-8489-01 7 100161551 100161551 C T AGFG2 Silent p.F422F 0.07 TCGA-F7-8489-01 7 148529746 148529746 G A EZH2 Missense_Mutation p.P115S 0.07 tolerated(0.06) benign(0.132) TCGA-F7-8489-01 7 150037234 150037234 C T RARRES2 Silent p.R78R 0.08 TCGA-F7-8489-01 7 23164844 23164844 C G KLHL7 Intron 0.25 TCGA-F7-8489-01 7 31146136 31146136 G C ADCYAP1R1 Missense_Mutation p.W443C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-F7-8489-01 7 36934613 36934613 C A ELMO1 Missense_Mutation p.V483L 0.07 deleterious(0) benign(0.311) TCGA-F7-8489-01 7 36934615 36934615 T C ELMO1 Missense_Mutation p.Q482R 0.07 deleterious(0.03) benign(0.02) TCGA-F7-8489-01 7 72738498 72738498 G C TRIM50 Silent p.L96L 0.13 TCGA-F7-8489-01 7 72912896 72912896 G C BAZ1B Missense_Mutation p.Q168E 0.13 tolerated(0.13) benign(0.254) TCGA-F7-8489-01 7 73790923 73790923 G T CLIP2 Missense_Mutation p.R731L 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-F7-8489-01 7 825331 825331 G A HEATR2 3'UTR 0.15 TCGA-F7-8489-01 8 134472060 134472060 C T ST3GAL1 Missense_Mutation p.V324M 0.08 probably_damaging(0.97) TCGA-F7-8489-01 8 144732346 144732346 A C ZNF623 Silent p.R102R 0.10 TCGA-F7-8489-01 8 21550705 21550705 G C GFRA2 3'UTR 0.20 TCGA-F7-8489-01 8 3046478 3046478 G T CSMD1 Nonsense_Mutation p.Y1818* 0.15 TCGA-F7-8489-01 8 61712984 61712984 A T CHD7 Missense_Mutation p.Y759F 0.17 probably_damaging(0.952) TCGA-F7-8489-01 8 65291711 65291711 G C MIR124-2 RNA 0.08 TCGA-F7-8489-01 8 92406215 92406215 C G SLC26A7 Missense_Mutation p.P628R 0.09 tolerated(0.08) possibly_damaging(0.597) TCGA-F7-8489-01 8 92407324 92407324 G C SLC26A7 3'Flank 0.10 TCGA-F7-8489-01 9 120475703 120475703 A C TLR4 Missense_Mutation p.N433H 0.15 tolerated(0.09) benign(0.062) TCGA-F7-8489-01 9 18777600 18777600 C A ADAMTSL1 Missense_Mutation p.R1125S 0.14 tolerated(0.78) benign(0.003) TCGA-F7-8489-01 9 27455167 27455167 G A MOB3B Nonsense_Mutation p.Q128* 0.10 TCGA-F7-8489-01 X 101971752 101971752 C A GPRASP2 Missense_Mutation p.S652Y 0.08 deleterious(0) probably_damaging(0.994) TCGA-F7-8489-01 X 110385355 110385355 G A PAK3 Silent p.E69E 0.28 TCGA-F7-8489-01 X 11308556 11308556 T C ARHGAP6 Intron 0.19 TCGA-F7-8489-01 X 127185370 127185370 G C ACTRT1 Missense_Mutation p.S272R 0.10 deleterious(0.04) probably_damaging(0.928) TCGA-F7-8489-01 X 140786513 140786513 T A SPANXD Missense_Mutation p.D17V 0.16 deleterious(0.01) benign(0.133) TCGA-F7-8489-01 Y 7172080 7172080 A G PRKY RNA 0.10 TCGA-F7-A50G-01 10 104173914 104173914 G C PSD Missense_Mutation p.L389V 0.17 tolerated(0.06) probably_damaging(0.994) TCGA-F7-A50G-01 10 127541142 127541142 G A DHX32 Missense_Mutation p.R388C 0.08 deleterious(0) probably_damaging(0.953) TCGA-F7-A50G-01 10 52913070 52913070 C T PRKG1 Missense_Mutation p.S153L 0.17 deleterious(0.05) benign(0.351) TCGA-F7-A50G-01 10 5567421 5567421 A G CALML3 Missense_Mutation p.M125V 0.15 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-F7-A50G-01 10 63519826 63519826 G C C10orf107 Missense_Mutation p.E100Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-F7-A50G-01 10 67680042 67680042 T C CTNNA3 3'UTR 0.20 TCGA-F7-A50G-01 11 117376387 117376387 A T DSCAML1 Missense_Mutation p.I675N 0.10 deleterious(0) probably_damaging(0.926) TCGA-F7-A50G-01 11 118403152 118403152 G A TMEM25 Missense_Mutation p.A120T 0.14 tolerated(0.12) probably_damaging(0.999) TCGA-F7-A50G-01 11 120702618 120702618 C A GRIK4 Missense_Mutation p.S190Y 0.13 tolerated(0.14) probably_damaging(0.95) TCGA-F7-A50G-01 11 123753921 123753921 C T TMEM225 Missense_Mutation p.R201H 0.14 tolerated(0.12) benign(0) TCGA-F7-A50G-01 11 123754841 123754841 T C TMEM225 Missense_Mutation p.Y135C 0.08 deleterious(0) probably_damaging(0.98) TCGA-F7-A50G-01 11 20486034 20486034 C G PRMT3 Nonsense_Mutation p.S430* 0.18 TCGA-F7-A50G-01 11 56511269 56511269 C A OR9G4 Missense_Mutation p.D7Y 0.08 tolerated_low_confidence(0.06) benign(0.005) TCGA-F7-A50G-01 11 60970983 60970983 C G PGA3 5'UTR 0.24 TCGA-F7-A50G-01 11 62459942 62459942 C T BSCL2 Missense_Mutation p.V257M 0.09 tolerated(0.23) benign(0.099) TCGA-F7-A50G-01 11 64033670 64033670 G A PLCB3 Missense_Mutation p.E1088K 0.15 deleterious(0.01) benign(0.415) TCGA-F7-A50G-01 11 65386040 65386040 C T PCNXL3 Missense_Mutation p.P403S 0.09 tolerated(0.64) benign(0.008) TCGA-F7-A50G-01 11 73021441 73021441 C T ARHGEF17 Silent p.I586I 0.13 TCGA-F7-A50G-01 11 92531574 92531574 C T FAT3 Nonsense_Mutation p.R1799* 0.17 TCGA-F7-A50G-01 12 11420681 11420681 G C PRB3 Missense_Mutation p.Q168E 0.15 tolerated(0.64) unknown(0) TCGA-F7-A50G-01 12 11420744 11420744 G C PRB3 Missense_Mutation p.Q147E 0.09 tolerated(0.55) unknown(0) TCGA-F7-A50G-01 12 121206807 121206807 G C SPPL3 Silent p.L186L 0.22 TCGA-F7-A50G-01 12 13716837 13716837 C T GRIN2B Missense_Mutation p.R1112Q 0.26 tolerated(0.27) possibly_damaging(0.691) TCGA-F7-A50G-01 12 20833109 20833109 G A PDE3A Silent p.S1110S 0.06 TCGA-F7-A50G-01 12 59271288 59271288 G A LRIG3 Silent p.V810V 0.23 TCGA-F7-A50G-01 13 52524492 52524492 C T ATP7B Missense_Mutation p.V831I 0.16 tolerated(1) benign(0.012) TCGA-F7-A50G-01 14 102461416 102461416 C T DYNC1H1 Missense_Mutation p.H1143Y 0.08 benign(0.003) TCGA-F7-A50G-01 14 105478001 105478001 C T CDCA4 Missense_Mutation p.R89Q 0.25 tolerated(0.91) benign(0.007) TCGA-F7-A50G-01 14 23417081 23417081 G C HAUS4 Missense_Mutation p.S235C 0.11 tolerated(0.16) probably_damaging(0.922) TCGA-F7-A50G-01 14 70713090 70713090 G T ADAM21P1 RNA 0.14 TCGA-F7-A50G-01 15 73562474 73562474 C T NEO1 Missense_Mutation p.T873M 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-F7-A50G-01 15 73635971 73635971 C A HCN4 Missense_Mutation p.D322Y 0.48 deleterious(0) unknown(0) TCGA-F7-A50G-01 16 3100516 3100516 C T MMP25 Silent p.D210D 0.17 TCGA-F7-A50G-01 16 31091514 31091514 G A ZNF646 Missense_Mutation p.R1290Q 0.14 tolerated(0.35) benign(0.008) TCGA-F7-A50G-01 17 26960084 26960084 G A KIAA0100 Silent p.V1227V 0.20 TCGA-F7-A50G-01 17 33281470 33281470 G T CCT6B Missense_Mutation p.A162D 0.15 tolerated(0.28) benign(0.016) TCGA-F7-A50G-01 17 42427098 42427098 C T GRN Nonsense_Mutation p.R110* 0.16 TCGA-F7-A50G-01 17 7576853 7576853 C A TP53 Missense_Mutation p.Q331H 0.29 tolerated(0.13) benign(0.052) TCGA-F7-A50G-01 17 7752972 7752972 G T KDM6B Missense_Mutation p.E1122D 0.16 probably_damaging(0.979) TCGA-F7-A50G-01 17 80273175 80273175 G T CD7 3'UTR 0.24 TCGA-F7-A50G-01 18 23969873 23969873 G A TAF4B Missense_Mutation p.R829H 0.21 tolerated(0.05) probably_damaging(0.992) TCGA-F7-A50G-01 18 45422948 45422948 C T SMAD2 Silent p.E60E 0.19 TCGA-F7-A50G-01 18 74091257 74091257 C T ZNF516 Missense_Mutation p.R938Q 0.20 deleterious(0) probably_damaging(0.994) TCGA-F7-A50G-01 19 10883259 10883259 G A DNM2 Missense_Mutation p.G114S 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A50G-01 19 15281581 15281581 C G NOTCH3 Missense_Mutation p.D1598H 0.15 deleterious(0.02) possibly_damaging(0.815) TCGA-F7-A50G-01 19 19258545 19258545 C T MEF2B Missense_Mutation p.E119K 0.21 deleterious(0.01) benign(0.038) TCGA-F7-A50G-01 19 36616423 36616423 C G TBCB Silent p.G206G 0.11 TCGA-F7-A50G-01 19 37369178 37369178 C T ZNF345 Silent p.C482C 0.31 TCGA-F7-A50G-01 19 41448070 41448070 G A AC092071.1 5'Flank 0.12 TCGA-F7-A50G-01 19 51462533 51462533 G A KLK6 Nonsense_Mutation p.R208* 0.11 TCGA-F7-A50G-01 19 51885814 51885814 C G LIM2 Missense_Mutation p.W103C 0.10 deleterious(0) probably_damaging(1) TCGA-F7-A50G-01 19 52870026 52870026 G C ZNF610 3'UTR 0.18 TCGA-F7-A50G-01 19 54214313 54214313 C T MIR524 RNA 0.12 TCGA-F7-A50G-01 19 7509297 7509297 G A ARHGEF18 Missense_Mutation p.R335Q 0.20 tolerated(0.07) benign(0.272) TCGA-F7-A50G-01 1 109810195 109810195 G A CELSR2 Silent p.E2013E 0.12 TCGA-F7-A50G-01 1 145508277 145508277 A T RBM8A Silent p.P66P 0.12 TCGA-F7-A50G-01 1 156693140 156693140 A C ISG20L2 3'UTR 0.22 TCGA-F7-A50G-01 1 159922091 159922091 C T SLAMF9 Missense_Mutation p.V209I 0.11 tolerated(1) benign(0.001) TCGA-F7-A50G-01 1 169437407 169437407 G A SLC19A2 Missense_Mutation p.T436M 0.07 deleterious(0.01) possibly_damaging(0.903) TCGA-F7-A50G-01 1 186329077 186329077 C G TPR Missense_Mutation p.E415Q 0.13 benign(0.403) TCGA-F7-A50G-01 1 19578013 19578013 G A EMC1 5'UTR 0.11 TCGA-F7-A50G-01 1 19712105 19712105 C T CAPZB Missense_Mutation p.E37K 0.17 deleterious(0) probably_damaging(1) TCGA-F7-A50G-01 1 198668738 198668738 C G PTPRC Missense_Mutation p.S115W 0.13 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-F7-A50G-01 1 20005587 20005587 C T HTR6 Missense_Mutation p.S350L 0.22 deleterious(0) benign(0.274) TCGA-F7-A50G-01 1 204380568 204380568 G C PPP1R15B 5'UTR 0.16 TCGA-F7-A50G-01 1 22178122 22178122 C T HSPG2 Missense_Mutation p.D2359N 0.13 possibly_damaging(0.845) TCGA-F7-A50G-01 1 222905989 222905989 A C BROX Missense_Mutation p.E390A 0.16 tolerated(0.11) benign(0.01) TCGA-F7-A50G-01 1 24078328 24078328 C G TCEB3 Silent p.L437L 0.14 TCGA-F7-A50G-01 1 26360198 26360198 C T EXTL1 Silent p.A510A 0.14 TCGA-F7-A50G-01 1 27676954 27676954 C T SYTL1 Missense_Mutation p.P328L 0.17 deleterious(0) probably_damaging(1) TCGA-F7-A50G-01 1 3335245 3335245 T G PRDM16 Missense_Mutation p.I959S 0.16 deleterious(0.03) possibly_damaging(0.548) TCGA-F7-A50G-01 1 35900555 35900555 G C KIAA0319L Silent p.G1030G 0.29 TCGA-F7-A50G-01 1 55337057 55337057 G A DHCR24 Missense_Mutation p.T281I 0.16 tolerated(0.1) possibly_damaging(0.567) TCGA-F7-A50G-01 1 99771528 99771528 G A LPPR4 Silent p.P418P 0.30 TCGA-F7-A50G-01 21 37650303 37650303 C T DOPEY2 Nonsense_Mutation p.R1915* 0.20 TCGA-F7-A50G-01 22 40074056 40074056 G A CACNA1I Missense_Mutation p.M1666I 0.21 deleterious(0.03) benign(0.072) TCGA-F7-A50G-01 2 11341164 11341164 C T ROCK2 Silent p.K943K 0.31 TCGA-F7-A50G-01 2 161349905 161349905 C T RBMS1 5'UTR 0.42 TCGA-F7-A50G-01 2 171240310 171240310 C G MYO3B Missense_Mutation p.L426V 0.18 tolerated(0.12) benign(0.027) TCGA-F7-A50G-01 2 179537198 179537198 T C TTN Silent p.V11622V 0.18 TCGA-F7-A50G-01 2 21245909 21245909 C T APOB Silent p.Q870Q 0.18 TCGA-F7-A50G-01 2 27715247 27715247 C T FNDC4 3'UTR 0.11 TCGA-F7-A50G-01 2 42553383 42553383 C G EML4 Missense_Mutation p.Q778E 0.13 tolerated(0.14) benign(0.027) TCGA-F7-A50G-01 2 55920943 55920943 A G PNPT1 Missense_Mutation p.Y6H 0.16 tolerated_low_confidence(0.54) benign(0) TCGA-F7-A50G-01 2 63086364 63086364 C G EHBP1 Nonsense_Mutation p.S267* 0.25 TCGA-F7-A50G-01 3 119112315 119112315 C T ARHGAP31 Nonsense_Mutation p.R295* 0.15 TCGA-F7-A50G-01 3 138433537 138433537 G C PIK3CB Missense_Mutation p.H359D 0.08 deleterious(0) probably_damaging(0.997) TCGA-F7-A50G-01 3 188584112 188584112 T G LPP Missense_Mutation p.I512S 0.11 deleterious(0) probably_damaging(0.948) TCGA-F7-A50G-01 3 49695531 49695531 C T BSN Missense_Mutation p.R2848W 0.15 unknown(0) TCGA-F7-A50G-01 4 113352758 113352758 C T ALPK1 Silent p.A685A 0.08 TCGA-F7-A50G-01 4 123663151 123663151 C T BBS12 Missense_Mutation p.S35L 0.19 tolerated(0.05) benign(0.017) TCGA-F7-A50G-01 4 169842828 169842828 C G PALLD Missense_Mutation p.I998M 0.11 deleterious(0.01) possibly_damaging(0.888) TCGA-F7-A50G-01 4 173730662 173730662 G A GALNTL6 Missense_Mutation p.C235Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-F7-A50G-01 4 55569941 55569941 G A KIT Missense_Mutation p.E270K 0.20 tolerated(0.77) benign(0.43) TCGA-F7-A50G-01 4 72352674 72352674 C G SLC4A4 Nonsense_Mutation p.S638* 0.30 TCGA-F7-A50G-01 4 8465768 8465768 C T TRMT44 Silent p.I420I 0.16 TCGA-F7-A50G-01 4 88766758 88766758 G C MEPE Missense_Mutation p.E246D 0.15 tolerated(0.46) possibly_damaging(0.683) TCGA-F7-A50G-01 4 90650392 90650392 C A SNCA Missense_Mutation p.D115Y 0.16 deleterious(0.02) possibly_damaging(0.465) TCGA-F7-A50G-01 5 110407586 110407586 C T TSLP 5'UTR 0.12 TCGA-F7-A50G-01 5 11346677 11346677 G C CTNND2 Missense_Mutation p.Q479E 0.15 tolerated_low_confidence(0.5) benign(0.255) TCGA-F7-A50G-01 5 128324295 128324295 C G SLC27A6 Missense_Mutation p.L230V 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-F7-A50G-01 5 169701311 169701311 C T LCP2 Silent p.S106S 0.33 TCGA-F7-A50G-01 5 178413416 178413416 C T GRM6 Silent p.T613T 0.12 TCGA-F7-A50G-01 5 179198178 179198178 C T MAML1 Missense_Mutation p.R668C 0.26 deleterious(0) possibly_damaging(0.489) TCGA-F7-A50G-01 5 78181427 78181427 G A ARSB Silent p.F374F 0.20 TCGA-F7-A50G-01 5 80508245 80508245 G A RASGRF2 Missense_Mutation p.A1073T 0.10 tolerated(0.14) benign(0.018) TCGA-F7-A50G-01 5 94922369 94922370 - A ARSK Frame_Shift_Ins p.E271Rfs*3 0.30 TCGA-F7-A50G-01 6 27833528 27833528 T C HIST1H2AL 3'UTR 0.14 TCGA-F7-A50G-01 6 32038185 32038185 C T TNXB Missense_Mutation p.R1666Q 0.22 benign(0.284) TCGA-F7-A50G-01 7 103175930 103175930 C T RELN Silent p.A2394A 0.16 TCGA-F7-A50G-01 7 130025070 130025070 G C CPA1 Missense_Mutation p.D291H 0.23 deleterious(0) possibly_damaging(0.84) TCGA-F7-A50G-01 7 138546052 138546052 C T KIAA1549 Missense_Mutation p.A1694T 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A50G-01 7 47317713 47317713 G A TNS3 Silent p.F1433F 0.20 TCGA-F7-A50G-01 7 5967840 5967840 C T RSPH10B Missense_Mutation p.E807K 0.10 deleterious(0.02) benign(0.099) TCGA-F7-A50G-01 7 6836384 6836384 G A RSPH10B2 Missense_Mutation p.E807K 0.54 deleterious(0.03) benign(0.018) TCGA-F7-A50G-01 7 76631630 76631630 G T UPK3B Intron 0.16 TCGA-F7-A50G-01 7 92844792 92844792 C T HEPACAM2 Missense_Mutation p.D213N 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-F7-A50G-01 8 101051204 101051204 G C RGS22 Missense_Mutation p.F707L 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A50G-01 8 37610986 37610986 G A ERLIN2 Missense_Mutation p.R253Q 0.20 tolerated(0.06) benign(0.162) TCGA-F7-A50G-01 8 65509365 65509365 C T CYP7B1 Missense_Mutation p.R452Q 0.11 deleterious(0) probably_damaging(1) TCGA-F7-A50G-01 9 131735480 131735480 C G NUP188 Silent p.L385L 0.35 TCGA-F7-A50G-01 9 136501745 136501745 C T DBH Silent p.G84G 0.29 TCGA-F7-A50G-01 9 136573530 136573530 G A SARDH Missense_Mutation p.T450M 0.32 tolerated(0.09) possibly_damaging(0.803) TCGA-F7-A50G-01 9 32634014 32634014 C G TAF1L Missense_Mutation p.D522H 0.08 deleterious(0) probably_damaging(0.997) TCGA-F7-A50G-01 9 86421373 86421373 T C GKAP1 Silent p.Q20Q 0.11 TCGA-F7-A50G-01 9 93641064 93641066 CAT - SYK In_Frame_Del p.I472del 0.12 TCGA-F7-A50G-01 X 104463774 104463774 G A TEX13A Nonsense_Mutation p.Q368* 0.40 TCGA-F7-A50G-01 X 135429650 135429650 C T GPR112 Missense_Mutation p.T1262I 0.31 tolerated(0.51) benign(0.005) TCGA-F7-A50G-01 X 3573222 3573222 C T PRKX Silent p.T189T 0.35 TCGA-F7-A50G-01 X 78427418 78427418 G A GPR174 Missense_Mutation p.R305K 0.40 tolerated(0.15) benign(0.064) TCGA-F7-A50I-01 10 102697158 102697159 - AT FAM178A Frame_Shift_Ins p.M813Ifs*2 0.10 TCGA-F7-A50I-01 10 104591347 104591347 G A CYP17A1 Silent p.D387D 0.27 TCGA-F7-A50I-01 10 104679569 104679569 G T CNNM2 Missense_Mutation p.K444N 0.08 deleterious(0) probably_damaging(0.998) TCGA-F7-A50I-01 10 106937790 106937790 A T SORCS3 Intron 0.15 TCGA-F7-A50I-01 10 111893128 111893128 C T ADD3 Missense_Mutation p.P625S 0.09 tolerated(0.07) possibly_damaging(0.642) TCGA-F7-A50I-01 10 118969271 118969271 G C KCNK18 Missense_Mutation p.A206P 0.13 tolerated(0.29) benign(0.01) TCGA-F7-A50I-01 10 131755566 131755566 A G EBF3 Silent p.C170C 0.09 TCGA-F7-A50I-01 10 29600125 29600125 T C LYZL1 3'UTR 0.21 TCGA-F7-A50I-01 10 34400150 34400150 C T PARD3 Missense_Mutation p.A1340T 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.529) TCGA-F7-A50I-01 10 81064919 81064919 A G ZMIZ1 Splice_Site p.X763_splice 0.21 TCGA-F7-A50I-01 10 875361 875361 C A LARP4B Silent p.T363T 0.33 TCGA-F7-A50I-01 11 117376424 117376424 C T DSCAML1 Missense_Mutation p.E663K 0.15 tolerated(0.09) benign(0.212) TCGA-F7-A50I-01 11 123474230 123474230 G T GRAMD1B Missense_Mutation p.D240Y 0.28 deleterious(0.01) probably_damaging(0.917) TCGA-F7-A50I-01 11 46700536 46700536 G C ARHGAP1 3'UTR 0.27 TCGA-F7-A50I-01 11 592631 592631 G A PHRF1 Missense_Mutation p.D193N 0.28 deleterious(0.02) benign(0.012) TCGA-F7-A50I-01 11 71808770 71808770 G T LAMTOR1 3'UTR 0.24 TCGA-F7-A50I-01 11 76814046 76814046 G A OMP Missense_Mutation p.R54H 0.31 deleterious_low_confidence(0) benign(0.014) TCGA-F7-A50I-01 11 85692227 85692227 C - PICALM Frame_Shift_Del p.G575Dfs*23 0.15 TCGA-F7-A50I-01 11 9406297 9406297 G C IPO7 5'UTR 0.38 TCGA-F7-A50I-01 12 112130610 112130610 C A ACAD10 Silent p.R33R 0.22 TCGA-F7-A50I-01 12 27468247 27468247 G A STK38L Silent p.R267R 0.22 TCGA-F7-A50I-01 12 50040717 50040717 G A FMNL3 Missense_Mutation p.R983W 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-F7-A50I-01 12 54914562 54914562 G T NCKAP1L Silent p.L570L 0.16 TCGA-F7-A50I-01 12 56437956 56437956 G A RPS26 3'UTR 0.20 TCGA-F7-A50I-01 12 57397096 57397106 CGTCTTCCAGA - ZBTB39 Frame_Shift_Del p.L533Pfs*31 0.11 TCGA-F7-A50I-01 12 78392148 78392148 G A NAV3 Missense_Mutation p.G258R 0.24 deleterious(0) possibly_damaging(0.526) TCGA-F7-A50I-01 13 113888215 113888215 A G CUL4A Missense_Mutation p.Y227C 0.25 deleterious(0) probably_damaging(1) TCGA-F7-A50I-01 13 38164660 38164660 G T POSTN Missense_Mutation p.P97H 0.31 deleterious(0) probably_damaging(0.999) TCGA-F7-A50I-01 13 43987062 43987062 T A ENOX1 5'UTR 0.27 TCGA-F7-A50I-01 13 70275855 70275855 C T KLHL1 Silent p.V742V 0.21 TCGA-F7-A50I-01 14 21458137 21458137 C T METTL17 5'Flank 0.31 TCGA-F7-A50I-01 14 22090721 22090721 C T TRAV1-1 3'Flank 0.27 TCGA-F7-A50I-01 14 22314901 22314901 G C TRAV8-2 5'UTR 0.08 TCGA-F7-A50I-01 14 53540558 53540558 C G DDHD1 Missense_Mutation p.E433Q 0.27 deleterious(0.04) benign(0.014) TCGA-F7-A50I-01 14 57675357 57675357 T C EXOC5 Silent p.R699R 0.19 TCGA-F7-A50I-01 14 65264532 65264532 A C SPTB Missense_Mutation p.L366R 0.07 deleterious(0) probably_damaging(0.999) TCGA-F7-A50I-01 14 81610369 81610369 T C TSHR Missense_Mutation p.V656A 0.27 deleterious(0) possibly_damaging(0.88) TCGA-F7-A50I-01 14 90450869 90450869 G A TDP1 Silent p.L298L 0.11 TCGA-F7-A50I-01 14 94528707 94528707 C A DDX24 Missense_Mutation p.D327Y 0.28 deleterious(0) possibly_damaging(0.879) TCGA-F7-A50I-01 15 101114293 101114293 G A LINS Missense_Mutation p.S262F 0.08 deleterious(0) probably_damaging(0.98) TCGA-F7-A50I-01 15 101922383 101922383 G A PCSK6 Silent p.D481D 0.20 TCGA-F7-A50I-01 15 21051185 21051185 G A POTEB2 Silent p.D425D 0.13 TCGA-F7-A50I-01 15 55647768 55647768 A G PIGB 3'UTR 0.36 TCGA-F7-A50I-01 15 58254324 58254324 C G ALDH1A2 Silent p.V379V 0.26 TCGA-F7-A50I-01 15 72455669 72455669 C A GRAMD2 Missense_Mutation p.E298D 0.08 tolerated(0.06) benign(0.027) TCGA-F7-A50I-01 15 74240200 74240200 G T LOXL1 Missense_Mutation p.W520L 0.16 deleterious(0) probably_damaging(0.932) TCGA-F7-A50I-01 15 78782855 78782855 T G IREB2 Missense_Mutation p.F723C 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A50I-01 16 2025058 2025058 C T TBL3 Silent p.V198V 0.09 TCGA-F7-A50I-01 16 3452344 3452344 A T ZNF174 Missense_Mutation p.S114C 0.21 tolerated(0.09) benign(0.031) TCGA-F7-A50I-01 16 58615370 58615370 C T CNOT1 Missense_Mutation p.G365E 0.20 tolerated(0.65) benign(0.009) TCGA-F7-A50I-01 16 82131955 82131955 G A HSD17B2 Missense_Mutation p.D360N 0.27 tolerated(0.09) benign(0.174) TCGA-F7-A50I-01 17 10219337 10219337 G A MYH13 Silent p.N1248N 0.43 TCGA-F7-A50I-01 17 10438615 10438615 G C MYH2 Missense_Mutation p.P681R 0.22 deleterious(0) probably_damaging(0.988) TCGA-F7-A50I-01 17 19285691 19285691 C T MAPK7 Missense_Mutation p.P692L 0.04 tolerated(0.41) unknown(0) TCGA-F7-A50I-01 17 29164287 29164287 G A ATAD5 Silent p.E677E 0.15 TCGA-F7-A50I-01 17 36483394 36483394 G A GPR179 Missense_Mutation p.P2020S 0.09 deleterious(0.05) benign(0.327) TCGA-F7-A50I-01 17 39914005 39914005 C A JUP Missense_Mutation p.R602L 0.24 tolerated(0.11) probably_damaging(0.992) TCGA-F7-A50I-01 17 48275342 48275342 G A COL1A1 Missense_Mutation p.P204S 0.24 unknown(0) TCGA-F7-A50I-01 17 56492716 56492716 T C RNF43 Missense_Mutation p.I75V 0.10 tolerated(0.78) benign(0.002) TCGA-F7-A50I-01 17 61623365 61623365 C A KCNH6 3'UTR 0.23 TCGA-F7-A50I-01 17 61994788 61994788 C G GH1 Missense_Mutation p.D179H 0.20 tolerated(0.13) benign(0.122) TCGA-F7-A50I-01 17 62493095 62493095 G T POLG2 5'UTR 0.29 TCGA-F7-A50I-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.43 deleterious(0) probably_damaging(0.994) TCGA-F7-A50I-01 18 5291781 5291781 A G ZBTB14 Silent p.S142S 0.20 TCGA-F7-A50I-01 19 2427444 2427444 T C TIMM13 Missense_Mutation p.I30V 0.20 tolerated(0.23) benign(0.208) TCGA-F7-A50I-01 19 38943512 38943512 C T RYR1 Missense_Mutation p.T433M 0.39 benign(0.075) TCGA-F7-A50I-01 19 40433526 40433526 C T FCGBP Nonsense_Mutation p.W248* 0.31 TCGA-F7-A50I-01 19 49132281 49132281 G T SPHK2 Missense_Mutation p.D406Y 0.11 deleterious(0.03) benign(0.105) TCGA-F7-A50I-01 19 57088800 57088800 A C ZNF470 Missense_Mutation p.T335P 0.23 deleterious(0) possibly_damaging(0.677) TCGA-F7-A50I-01 19 5867208 5867208 C T FUT5 Missense_Mutation p.D177N 0.21 deleterious(0) probably_damaging(1) TCGA-F7-A50I-01 19 9057047 9057047 C A MUC16 Silent p.V10133V 0.27 TCGA-F7-A50I-01 1 113197106 113197106 G A CAPZA1 Missense_Mutation p.G80D 0.15 tolerated(0.07) possibly_damaging(0.734) TCGA-F7-A50I-01 1 11584076 11584076 G C PTCHD2 Missense_Mutation p.V814L 0.13 tolerated(0.51) benign(0.001) TCGA-F7-A50I-01 1 12884893 12884893 C T PRAMEF11 Silent p.R406R 0.11 TCGA-F7-A50I-01 1 155177676 155177676 G A THBS3 5'UTR 0.08 TCGA-F7-A50I-01 1 161954032 161954032 G A OLFML2B Silent p.S562S 0.08 TCGA-F7-A50I-01 1 176525684 176525684 G T PAPPA2 Missense_Mutation p.G76W 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.708) TCGA-F7-A50I-01 1 176525975 176525975 A G PAPPA2 Missense_Mutation p.T173A 0.38 tolerated_low_confidence(0.3) benign(0.001) TCGA-F7-A50I-01 1 196712698 196712698 T C CFH Missense_Mutation p.F1084L 0.17 tolerated(0.18) benign(0.1) TCGA-F7-A50I-01 1 236746421 236746421 C G HEATR1 Missense_Mutation p.E773Q 0.08 tolerated(0.37) benign(0.004) TCGA-F7-A50I-01 1 240341300 240341300 G T FMN2 Missense_Mutation p.R621L 0.32 unknown(0) TCGA-F7-A50I-01 1 34190302 34190302 A G CSMD2 Missense_Mutation p.I860T 0.15 deleterious(0.04) benign(0.071) TCGA-F7-A50I-01 1 38023218 38023218 A G DNALI1 Silent p.K54K 0.09 TCGA-F7-A50I-01 1 42046795 42046795 G A HIVEP3 Missense_Mutation p.P1225L 0.11 probably_damaging(0.999) TCGA-F7-A50I-01 1 79383705 79383705 G A ELTD1 Missense_Mutation p.H498Y 0.05 deleterious(0.01) probably_damaging(1) TCGA-F7-A50I-01 20 22563595 22563595 G A FOXA2 Silent p.G95G 0.20 TCGA-F7-A50I-01 20 44520385 44520385 A G CTSA Missense_Mutation p.K78E 0.09 deleterious(0) possibly_damaging(0.457) TCGA-F7-A50I-01 20 4766896 4766896 C T RASSF2 Missense_Mutation p.V298I 0.29 tolerated(1) benign(0.085) TCGA-F7-A50I-01 21 34968063 34968063 G C CRYZL1 Nonsense_Mutation p.S293* 0.09 TCGA-F7-A50I-01 21 45656849 45656849 C T ICOSLG Missense_Mutation p.V103I 0.31 tolerated(0.78) benign(0.322) TCGA-F7-A50I-01 22 23010828 23010828 C T IGLV3-27 Silent p.L11L 0.33 TCGA-F7-A50I-01 22 29107975 29107975 G A CHEK2 Silent p.F281F 0.09 TCGA-F7-A50I-01 22 39482340 39482340 C T APOBEC3G Silent p.D264D 0.09 TCGA-F7-A50I-01 22 44063001 44063001 C T EFCAB6 Missense_Mutation p.V656M 0.18 tolerated(0.11) benign(0.001) TCGA-F7-A50I-01 2 109463294 109463294 A G CCDC138 Missense_Mutation p.E475G 0.20 tolerated(0.18) possibly_damaging(0.607) TCGA-F7-A50I-01 2 158300475 158300475 C A CYTIP Missense_Mutation p.A20S 0.23 tolerated(0.6) benign(0.004) TCGA-F7-A50I-01 2 189916191 189916191 G A COL5A2 Missense_Mutation p.A929V 0.09 unknown(0) TCGA-F7-A50I-01 2 21231727 21231727 C A APOB Missense_Mutation p.K2671N 0.11 possibly_damaging(0.617) TCGA-F7-A50I-01 2 218700800 218700800 G A TNS1 Nonsense_Mutation p.Q923* 0.16 TCGA-F7-A50I-01 2 220146750 220146750 T - DNAJB2 Frame_Shift_Del p.F107Lfs*94 0.17 TCGA-F7-A50I-01 2 228169768 228169768 A G COL4A3 Silent p.E1407E 0.13 TCGA-F7-A50I-01 2 242004861 242004861 C T SNED1 Missense_Mutation p.R954C 0.26 deleterious(0.04) probably_damaging(0.969) TCGA-F7-A50I-01 2 242035790 242035790 A - MTERFD2 Frame_Shift_Del p.S257Hfs*2 0.15 TCGA-F7-A50I-01 2 31360929 31360929 C A GALNT14 Silent p.L8L 0.09 TCGA-F7-A50I-01 2 96992391 96992391 T C ITPRIPL1 Missense_Mutation p.S16P 0.25 tolerated_low_confidence(0.09) possibly_damaging(0.551) TCGA-F7-A50I-01 2 9991714 9991714 C T TAF1B Missense_Mutation p.L84F 0.14 deleterious(0) probably_damaging(0.976) TCGA-F7-A50I-01 3 114014592 114014592 G T TIGIT Missense_Mutation p.G88C 0.14 deleterious(0) probably_damaging(0.997) TCGA-F7-A50I-01 3 130737356 130737356 T A ASTE1 Missense_Mutation p.S503C 0.12 deleterious(0.03) benign(0.016) TCGA-F7-A50I-01 3 133320044 133320044 T C TOPBP1 3'UTR 0.17 TCGA-F7-A50I-01 3 14508054 14508054 G A SLC6A6 Missense_Mutation p.A255T 0.29 deleterious(0.01) benign(0.228) TCGA-F7-A50I-01 3 159976338 159976338 C T IFT80 Missense_Mutation p.S770N 0.06 tolerated_low_confidence(0.5) benign(0) TCGA-F7-A50I-01 3 179294649 179294649 G T ACTL6A Missense_Mutation p.R239I 0.12 tolerated(0.09) possibly_damaging(0.529) TCGA-F7-A50I-01 3 182987743 182987743 A C B3GNT5 Missense_Mutation p.N53H 0.16 deleterious(0) probably_damaging(0.994) TCGA-F7-A50I-01 3 191098047 191098047 A T CCDC50 Missense_Mutation p.Q359L 0.24 deleterious(0) probably_damaging(0.997) TCGA-F7-A50I-01 3 193007714 193007714 C A ATP13A5 Missense_Mutation p.V995L 0.24 tolerated(0.15) benign(0.043) TCGA-F7-A50I-01 3 195595561 195595561 C A TNK2 Silent p.V599V 0.09 TCGA-F7-A50I-01 3 23934814 23934815 - A NKIRAS1 Frame_Shift_Ins p.L118Ifs*9 0.23 TCGA-F7-A50I-01 3 35835331 35835331 C G ARPP21 Missense_Mutation p.Q775E 0.18 deleterious(0) probably_damaging(0.971) TCGA-F7-A50I-01 3 3886868 3886868 T A LRRN1 Silent p.V181V 0.18 TCGA-F7-A50I-01 3 40529725 40529725 C T ZNF619 Missense_Mutation p.S615F 0.26 tolerated_low_confidence(0.09) benign(0.261) TCGA-F7-A50I-01 3 48610945 48610945 C A COL7A1 Splice_Site p.X2206_splice 0.26 TCGA-F7-A50I-01 3 69105055 69105055 G T UBA3 Nonsense_Mutation p.S417* 0.25 TCGA-F7-A50I-01 4 115750948 115750948 C G NDST4 Missense_Mutation p.E833Q 0.15 tolerated(0.28) benign(0.152) TCGA-F7-A50I-01 4 128878731 128878731 C T MFSD8 Missense_Mutation p.E27K 0.35 deleterious(0.01) possibly_damaging(0.905) TCGA-F7-A50I-01 4 138452086 138452086 T C PCDH18 Missense_Mutation p.D386G 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A50I-01 4 143044493 143044493 G A INPP4B Missense_Mutation p.H657Y 0.09 tolerated(0.42) benign(0.028) TCGA-F7-A50I-01 4 146567274 146567274 A T MMAA Silent p.G233G 0.19 TCGA-F7-A50I-01 4 155507843 155507843 T A FGA Silent p.P246P 0.14 TCGA-F7-A50I-01 4 187557272 187557273 - A FAT1 Frame_Shift_Ins p.T1364Yfs*8 0.19 TCGA-F7-A50I-01 4 57194512 57194512 C T KIAA1211 3'UTR 0.15 TCGA-F7-A50I-01 4 68500167 68500167 T C UBA6 Missense_Mutation p.I638V 0.18 deleterious(0.04) possibly_damaging(0.893) TCGA-F7-A50I-01 4 96137261 96137261 A T UNC5C Intron 0.14 TCGA-F7-A50I-01 5 10239183 10239183 C T FAM173B Missense_Mutation p.R101H 0.14 deleterious(0.03) possibly_damaging(0.751) TCGA-F7-A50I-01 5 109153073 109153073 A T MAN2A1 Missense_Mutation p.K681N 0.27 tolerated(0.32) benign(0.023) TCGA-F7-A50I-01 5 127692978 127692978 C G FBN2 Missense_Mutation p.L888F 0.20 tolerated(0.71) benign(0.012) TCGA-F7-A50I-01 5 137803316 137803316 A T EGR1 Missense_Mutation p.E393V 0.12 deleterious(0) unknown(0) TCGA-F7-A50I-01 5 13814732 13814732 A G DNAH5 Silent p.D2404D 0.14 TCGA-F7-A50I-01 5 140308636 140308636 G A PCDHAC1 Missense_Mutation p.R720H 0.22 tolerated(0.23) benign(0.001) TCGA-F7-A50I-01 5 160067536 160067536 C T ATP10B Missense_Mutation p.R311Q 0.25 deleterious(0.03) possibly_damaging(0.474) TCGA-F7-A50I-01 5 178507032 178507032 C A ZNF354C Missense_Mutation p.F533L 0.36 tolerated(0.06) benign(0.002) TCGA-F7-A50I-01 5 34008204 34008204 C A AMACR 5'Flank 0.24 TCGA-F7-A50I-01 5 35957444 35957444 A G UGT3A1 Silent p.H307H 0.09 TCGA-F7-A50I-01 5 41199878 41199878 C G C6 Missense_Mutation p.C146S 0.14 deleterious(0) probably_damaging(1) TCGA-F7-A50I-01 5 52096173 52096173 G T PELO 5'UTR 0.24 TCGA-F7-A50I-01 5 71491562 71491562 G T MAP1B Missense_Mutation p.A794S 0.10 unknown(0) TCGA-F7-A50I-01 6 100838939 100838939 C T SIM1 Silent p.V533V 0.25 TCGA-F7-A50I-01 6 107955180 107955180 G A SOBP Missense_Mutation p.V378I 0.28 deleterious(0.02) benign(0.324) TCGA-F7-A50I-01 6 131190864 131190864 C A EPB41L2 Nonsense_Mutation p.E816* 0.18 TCGA-F7-A50I-01 6 160921853 160921853 G A LPAL2 RNA 0.25 TCGA-F7-A50I-01 6 163991740 163991740 T C QKI Nonstop_Mutation p.*342Qext*5 0.23 TCGA-F7-A50I-01 6 24781711 24781711 G T GMNN Missense_Mutation p.A46S 0.18 tolerated(0.38) benign(0.002) TCGA-F7-A50I-01 6 33263887 33263887 G A RGL2 Missense_Mutation p.P229L 0.13 deleterious(0.02) probably_damaging(0.918) TCGA-F7-A50I-01 6 33690670 33690670 C T IP6K3 Missense_Mutation p.G354S 0.47 tolerated(0.43) benign(0.028) TCGA-F7-A50I-01 6 43538706 43538706 T C XPO5 Missense_Mutation p.E109G 0.20 deleterious(0) probably_damaging(0.962) TCGA-F7-A50I-01 6 45390356 45390356 C A RUNX2 Missense_Mutation p.P29T 0.33 deleterious(0) benign(0.001) TCGA-F7-A50I-01 6 46657035 46657035 G A TDRD6 Silent p.R390R 0.33 TCGA-F7-A50I-01 6 46826191 46826191 G C GPR116 Missense_Mutation p.T1150S 0.09 deleterious(0) probably_damaging(1) TCGA-F7-A50I-01 6 7230564 7230564 G T RREB1 Silent p.L744L 0.31 TCGA-F7-A50I-01 6 76633398 76633398 C T IMPG1 Missense_Mutation p.A757T 0.25 tolerated_low_confidence(0.26) benign(0.027) TCGA-F7-A50I-01 7 100466242 100466242 G A TRIP6 Silent p.P163P 0.22 TCGA-F7-A50I-01 7 129950640 129950640 C T CPA4 Silent p.S269S 0.08 TCGA-F7-A50I-01 7 133884068 133884068 G C LRGUK Missense_Mutation p.G548R 0.09 deleterious(0) probably_damaging(1) TCGA-F7-A50I-01 7 134221420 134221420 G C AKR1B10 Missense_Mutation p.D150H 0.08 deleterious(0) probably_damaging(0.97) TCGA-F7-A50I-01 7 143771499 143771499 T C OR2A25 Missense_Mutation p.S63P 0.06 deleterious(0) probably_damaging(0.99) TCGA-F7-A50I-01 7 144077155 144077155 C T ARHGEF5 3'UTR 0.27 TCGA-F7-A50I-01 7 50607667 50607667 C T DDC Silent p.P87P 0.11 TCGA-F7-A50I-01 7 95025660 95025660 C T PON3 Translation_Start_Site p.M1? 0.24 deleterious(0) unknown(0) TCGA-F7-A50I-01 7 97833482 97833482 G T LMTK2 Silent p.S1489S 0.12 TCGA-F7-A50I-01 8 133044222 133044222 A T OC90 Missense_Mutation p.F313I 0.07 deleterious(0) probably_damaging(0.941) TCGA-F7-A50I-01 8 142151311 142151311 T C DENND3 Missense_Mutation p.C91R 0.06 tolerated(0.06) benign(0.299) TCGA-F7-A50I-01 8 142151312 142151312 G T DENND3 Missense_Mutation p.C91F 0.06 tolerated(0.18) benign(0.002) TCGA-F7-A50I-01 8 143558824 143558824 G A BAI1 Missense_Mutation p.R434H 0.11 deleterious(0) possibly_damaging(0.812) TCGA-F7-A50I-01 8 48874624 48874624 G T MCM4 Missense_Mutation p.D83Y 0.06 deleterious(0) possibly_damaging(0.707) TCGA-F7-A50I-01 8 51571223 51571224 - GTAT SNTG1 Frame_Shift_Ins 0.10 TCGA-F7-A50I-01 8 53092796 53092796 T A ST18 Nonsense_Mutation p.K55* 0.09 TCGA-F7-A50I-01 8 68150614 68150614 C G ARFGEF1 Missense_Mutation p.D1085H 0.05 tolerated(0.1) benign(0.083) TCGA-F7-A50I-01 8 72963052 72963052 T A TRPA1 Silent p.P622P 0.10 TCGA-F7-A50I-01 8 76472624 76472624 A G HNF4G Missense_Mutation p.H380R 0.11 deleterious(0.03) benign(0.266) TCGA-F7-A50I-01 8 88297017 88297017 G C CNBD1 Missense_Mutation p.A295P 0.55 deleterious(0) probably_damaging(0.98) TCGA-F7-A50I-01 9 102722405 102722405 C T STX17 Nonsense_Mutation p.Q184* 0.16 TCGA-F7-A50I-01 9 131484290 131484290 G T ZDHHC12 Missense_Mutation p.L105M 0.12 tolerated(0.21) probably_damaging(0.913) TCGA-F7-A50I-01 9 139393392 139393392 G A NOTCH1 Missense_Mutation p.L2047F 0.10 deleterious(0) probably_damaging(1) TCGA-F7-A50I-01 9 21971208 21971208 C T CDKN2A Splice_Site p.X51_splice 0.21 TCGA-F7-A50I-01 9 32631588 32631588 A G TAF1L Silent p.D1330D 0.07 TCGA-F7-A50I-01 9 71835869 71835869 G T TJP2 Missense_Mutation p.D168Y 0.18 deleterious(0.03) benign(0.029) TCGA-F7-A50I-01 9 82321747 82321747 C T TLE4 Missense_Mutation p.P290L 0.08 tolerated(0.07) benign(0.102) TCGA-F7-A50I-01 9 95482892 95482892 C T BICD2 Missense_Mutation p.R251H 0.15 deleterious(0) probably_damaging(1) TCGA-F7-A50I-01 X 31697647 31697647 G T DMD Missense_Mutation p.Q2573K 0.25 benign(0.092) TCGA-F7-A50I-01 X 69424196 69424196 T C DGAT2L6 Missense_Mutation p.V230A 0.35 tolerated(0.1) benign(0.023) TCGA-F7-A50I-01 Y 6115411 6115411 C A TSPY2 Silent p.P167P 0.29 TCGA-F7-A50J-01 10 117278774 117278774 T A ATRNL1 Missense_Mutation p.I1219N 0.44 deleterious(0) possibly_damaging(0.815) TCGA-F7-A50J-01 10 21097543 21097543 C G NEBL Missense_Mutation p.S886T 0.10 tolerated(0.32) benign(0.001) TCGA-F7-A50J-01 10 43692470 43692470 C G RASGEF1A Missense_Mutation p.K434N 0.24 tolerated(0.34) benign(0.007) TCGA-F7-A50J-01 10 47087415 47087415 G A NPY4R Missense_Mutation p.R211H 0.05 deleterious(0.03) benign(0.248) TCGA-F7-A50J-01 10 50686430 50686430 C G ERCC6 Missense_Mutation p.M752I 0.10 deleterious(0.05) benign(0.356) TCGA-F7-A50J-01 10 97816658 97816658 G A CCNJ Missense_Mutation p.E161K 0.17 deleterious(0.04) benign(0.425) TCGA-F7-A50J-01 10 98392731 98392731 C T PIK3AP1 Intron 0.12 TCGA-F7-A50J-01 11 10500162 10500162 C T AMPD3 Missense_Mutation p.P113L 0.10 tolerated(0.09) possibly_damaging(0.676) TCGA-F7-A50J-01 11 111749772 111749772 G C FDXACB1 Missense_Mutation p.Q29E 0.15 tolerated(0.85) benign(0.012) TCGA-F7-A50J-01 11 119020845 119020845 C G ABCG4 Nonsense_Mutation p.S57* 0.07 TCGA-F7-A50J-01 11 120989412 120989412 C T TECTA Silent p.S396S 0.24 TCGA-F7-A50J-01 11 123811135 123811135 T A OR4D5 Missense_Mutation p.V271D 0.13 deleterious(0) possibly_damaging(0.678) TCGA-F7-A50J-01 11 123811145 123811145 A G OR4D5 Silent p.L274L 0.11 TCGA-F7-A50J-01 11 428530 428530 G T ANO9 Missense_Mutation p.A377D 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-F7-A50J-01 11 47681654 47681654 T C AGBL2 3'UTR 0.16 TCGA-F7-A50J-01 11 4929490 4929490 A G OR51A7 Silent p.Q297Q 0.08 TCGA-F7-A50J-01 11 5474743 5474743 C G OR51I2 Missense_Mutation p.P9A 0.08 tolerated(0.13) possibly_damaging(0.472) TCGA-F7-A50J-01 11 55587459 55587459 G A OR5D18 Silent p.V118V 0.15 TCGA-F7-A50J-01 11 56237209 56237209 G A OR5M3 Silent p.F255F 0.09 TCGA-F7-A50J-01 11 58892339 58892339 G C FAM111B Missense_Mutation p.D257H 0.22 deleterious(0) probably_damaging(0.936) TCGA-F7-A50J-01 11 62293071 62293071 C G AHNAK Missense_Mutation p.E2940Q 0.17 possibly_damaging(0.526) TCGA-F7-A50J-01 11 62376895 62376895 G A EML3 Missense_Mutation p.P230L 0.17 deleterious(0) probably_damaging(1) TCGA-F7-A50J-01 11 62496334 62496350 TGCAGGAGGCTCAGCTG - TTC9C Frame_Shift_Del p.E7Gfs*18 0.14 TCGA-F7-A50J-01 11 64109501 64109501 C T CCDC88B Silent p.L237L 0.09 TCGA-F7-A50J-01 11 65660431 65660431 G T FOSL1 Missense_Mutation p.H248N 0.12 deleterious(0) possibly_damaging(0.528) TCGA-F7-A50J-01 11 66322064 66322064 G A CTD-3074O7.2 3'Flank 0.18 TCGA-F7-A50J-01 11 67163752 67163752 C G RAD9A Missense_Mutation p.I251M 0.08 deleterious(0.01) possibly_damaging(0.64) TCGA-F7-A50J-01 11 68326137 68326137 C T PPP6R3 Nonsense_Mutation p.R279* 0.10 TCGA-F7-A50J-01 11 70263192 70263192 C A CTTN Missense_Mutation p.D177E 0.09 tolerated(0.25) possibly_damaging(0.585) TCGA-F7-A50J-01 11 71238913 71238913 C T KRTAP5-7 3'UTR 0.13 TCGA-F7-A50J-01 11 82444685 82444685 G A FAM181B Silent p.F29F 0.25 TCGA-F7-A50J-01 11 9077436 9077436 C T SCUBE2 Missense_Mutation p.D371N 0.07 tolerated(0.45) benign(0.423) TCGA-F7-A50J-01 12 100709390 100709390 G A SCYL2 Missense_Mutation p.D384N 0.09 tolerated(0.21) benign(0.082) TCGA-F7-A50J-01 12 110226428 110226428 T A TRPV4 Missense_Mutation p.D662V 0.08 tolerated(0.08) probably_damaging(0.974) TCGA-F7-A50J-01 12 123694622 123694622 G T MPHOSPH9 Missense_Mutation p.T240K 0.21 tolerated(0.18) benign(0.007) TCGA-F7-A50J-01 12 21015380 21015380 C A SLCO1B3 Silent p.I172I 0.13 TCGA-F7-A50J-01 12 31256665 31256665 G A DDX11 Missense_Mutation p.V896I 0.26 deleterious_low_confidence(0) benign(0.417) TCGA-F7-A50J-01 12 32777928 32777928 G A FGD4 Missense_Mutation p.D521N 0.12 deleterious(0.05) possibly_damaging(0.471) TCGA-F7-A50J-01 12 39268294 39268294 T C CPNE8 Missense_Mutation p.T40A 0.22 tolerated(0.2) probably_damaging(0.996) TCGA-F7-A50J-01 12 57553625 57553625 G A LRP1 Missense_Mutation p.G606S 0.23 probably_damaging(0.981) TCGA-F7-A50J-01 12 57553626 57553626 G T LRP1 Missense_Mutation p.G606V 0.23 possibly_damaging(0.693) TCGA-F7-A50J-01 12 57860075 57860075 G T GLI1 Missense_Mutation p.W272L 0.13 deleterious(0) probably_damaging(0.999) TCGA-F7-A50J-01 12 82752438 82752438 T A METTL25 Missense_Mutation p.S32T 0.29 tolerated(0.44) benign(0.004) TCGA-F7-A50J-01 13 110831646 110831646 G A COL4A1 Silent p.I772I 0.26 TCGA-F7-A50J-01 13 36776120 36776120 C T SOHLH2 Silent p.T130T 0.11 TCGA-F7-A50J-01 13 45533706 45533706 C G NUFIP1 Missense_Mutation p.K277N 0.11 deleterious(0.05) possibly_damaging(0.808) TCGA-F7-A50J-01 13 48936965 48936965 C G RB1 Missense_Mutation p.P245A 0.09 tolerated(0.35) benign(0.001) TCGA-F7-A50J-01 13 88327663 88327663 C A SLITRK5 Missense_Mutation p.P7Q 0.10 deleterious_low_confidence(0.04) benign(0.003) TCGA-F7-A50J-01 14 20612782 20612782 T A OR4N5 Silent p.A296A 0.09 TCGA-F7-A50J-01 14 23000917 23000917 C T TRAJ12 Silent p.F10F 0.05 TCGA-F7-A50J-01 14 35778161 35778161 G A PSMA6 Silent p.K71K 0.06 TCGA-F7-A50J-01 14 51561606 51561606 G A TRIM9 Missense_Mutation p.R18W 0.12 deleterious(0.01) probably_damaging(0.948) TCGA-F7-A50J-01 14 77818038 77818038 C T TMED8 Missense_Mutation p.E59K 0.13 tolerated_low_confidence(0.06) benign(0.046) TCGA-F7-A50J-01 14 88945893 88945893 G A PTPN21 Missense_Mutation p.R628C 0.27 deleterious(0) possibly_damaging(0.836) TCGA-F7-A50J-01 15 22705344 22705344 C T AC116165.1 3'Flank 0.17 TCGA-F7-A50J-01 15 31818596 31818596 G A OTUD7A Silent p.S276S 0.25 TCGA-F7-A50J-01 15 44951326 44951326 C T SPG11 Silent p.T206T 0.16 TCGA-F7-A50J-01 15 60789691 60789691 G C RORA Missense_Mutation p.T545S 0.07 tolerated(1) benign(0.002) TCGA-F7-A50J-01 15 64231510 64231510 C T DAPK2 Silent p.K168K 0.22 TCGA-F7-A50J-01 15 76183295 76183295 C T UBE2Q2 Silent p.I323I 0.14 TCGA-F7-A50J-01 15 77092692 77092692 C T SCAPER Missense_Mutation p.A170T 0.09 deleterious(0) possibly_damaging(0.892) TCGA-F7-A50J-01 15 79606257 79606257 C G TMED3 Missense_Mutation p.F109L 0.18 deleterious(0) benign(0.349) TCGA-F7-A50J-01 15 93547975 93547975 C T CHD2 Silent p.F1469F 0.34 TCGA-F7-A50J-01 16 22337506 22337506 C G POLR3E Missense_Mutation p.S591R 0.15 tolerated(0.15) benign(0.023) TCGA-F7-A50J-01 16 28617044 28617044 G A SULT1A1 3'UTR 0.10 TCGA-F7-A50J-01 16 29998227 29998227 G A TAOK2 Silent p.E878E 0.16 TCGA-F7-A50J-01 16 49669771 49669771 G A ZNF423 Missense_Mutation p.R1098C 0.09 tolerated(0.05) possibly_damaging(0.634) TCGA-F7-A50J-01 16 65016096 65016096 C T CDH11 Missense_Mutation p.V370I 0.13 tolerated(0.25) benign(0.003) TCGA-F7-A50J-01 16 67035 67035 A G WASH4P Missense_Mutation p.F201L 0.11 tolerated(0.28) benign(0.006) TCGA-F7-A50J-01 16 67919692 67919692 C T NRN1L Silent p.F49F 0.16 TCGA-F7-A50J-01 16 69725771 69725771 G A NFAT5 Silent p.Q681Q 0.08 TCGA-F7-A50J-01 16 81712170 81712170 G C CMIP Missense_Mutation p.S442T 0.16 tolerated_low_confidence(0.2) benign(0.002) TCGA-F7-A50J-01 16 89755672 89755672 C T CDK10 Missense_Mutation p.R34W 0.17 deleterious(0) probably_damaging(0.99) TCGA-F7-A50J-01 17 16593777 16593777 C T CCDC144A Silent p.Y21Y 0.20 TCGA-F7-A50J-01 17 35641860 35641860 G C ACACA Missense_Mutation p.S117C 0.13 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-F7-A50J-01 17 41209136 41209136 C G BRCA1 Missense_Mutation p.R1758T 0.12 deleterious(0) benign(0.057) TCGA-F7-A50J-01 17 41832885 41832885 G A SOST Missense_Mutation p.A156V 0.14 deleterious(0) benign(0.079) TCGA-F7-A50J-01 17 41975692 41975692 C G MPP2 Missense_Mutation p.E30Q 0.12 tolerated(0.06) possibly_damaging(0.609) TCGA-F7-A50J-01 17 42153283 42153283 C G G6PC3 Missense_Mutation p.Q305E 0.09 tolerated(0.36) benign(0.297) TCGA-F7-A50J-01 17 58258922 58258922 C T USP32 Silent p.Q1437Q 0.19 TCGA-F7-A50J-01 17 80041239 80041239 C T FASN Missense_Mutation p.E1802K 0.13 tolerated(0.38) benign(0.02) TCGA-F7-A50J-01 17 8131624 8131624 T C CTC1 Silent p.L1176L 0.34 TCGA-F7-A50J-01 18 30791922 30791922 C G CCDC178 Missense_Mutation p.E726Q 0.12 tolerated(0.17) possibly_damaging(0.545) TCGA-F7-A50J-01 18 63525171 63525171 T A CDH7 Missense_Mutation p.V452D 0.21 deleterious(0) benign(0.208) TCGA-F7-A50J-01 18 65179810 65179810 G A DSEL Missense_Mutation p.A689V 0.17 tolerated(0.16) benign(0.056) TCGA-F7-A50J-01 19 11917869 11917869 C G ZNF491 Silent p.V367V 0.13 TCGA-F7-A50J-01 19 14568886 14568886 G T PKN1 Silent p.G409G 0.18 TCGA-F7-A50J-01 19 14748918 14748918 G T EMR3 Silent p.R495R 0.06 TCGA-F7-A50J-01 19 17999159 17999159 C T SLC5A5 Nonsense_Mutation p.R516* 0.13 TCGA-F7-A50J-01 19 21991248 21991248 T C ZNF43 Missense_Mutation p.T531A 0.25 deleterious(0) benign(0.015) TCGA-F7-A50J-01 19 288131 288131 C T PPAP2C Silent p.P52P 0.41 TCGA-F7-A50J-01 19 41828539 41828539 C T CCDC97 Silent p.I317I 0.11 TCGA-F7-A50J-01 19 42406962 42406962 G A ARHGEF1 Missense_Mutation p.R566H 0.21 deleterious(0) probably_damaging(0.942) TCGA-F7-A50J-01 19 42584120 42584120 G A ZNF574 Silent p.E454E 0.10 TCGA-F7-A50J-01 19 44050066 44050066 C A XRCC1 Nonsense_Mutation p.E509* 0.11 TCGA-F7-A50J-01 19 47228847 47228847 G A STRN4 Missense_Mutation p.S443L 0.13 deleterious(0) probably_damaging(0.99) TCGA-F7-A50J-01 19 52249693 52249693 G A FPR1 Silent p.N185N 0.09 TCGA-F7-A50J-01 19 54313706 54313706 C T NLRP12 Missense_Mutation p.V403I 0.14 tolerated(0.65) benign(0.083) TCGA-F7-A50J-01 19 57932040 57932043 TTCT - ZNF17 Frame_Shift_Del p.F394Lfs*63 0.11 TCGA-F7-A50J-01 19 58846413 58846413 C T ZSCAN22 Missense_Mutation p.A82V 0.06 tolerated(1) benign(0) TCGA-F7-A50J-01 1 100358105 100358105 T G AGL Silent p.P1067P 0.18 TCGA-F7-A50J-01 1 10535035 10535035 G C PEX14 Silent p.S4S 0.24 TCGA-F7-A50J-01 1 109794268 109794268 C T CELSR2 Silent p.L523L 0.13 TCGA-F7-A50J-01 1 152277898 152277898 T A FLG Missense_Mutation p.Q3155L 0.32 unknown(0) TCGA-F7-A50J-01 1 15802594 15802594 C T CELA2A 3'Flank 0.13 TCGA-F7-A50J-01 1 158735784 158735784 G C OR6N1 Nonsense_Mutation p.S230* 0.15 TCGA-F7-A50J-01 1 167944229 167944229 G A DCAF6 Silent p.T138T 0.17 TCGA-F7-A50J-01 1 216371768 216371768 T C USH2A Missense_Mutation p.T1324A 0.12 benign(0.042) TCGA-F7-A50J-01 1 216495239 216495239 T C USH2A Missense_Mutation p.T544A 0.15 probably_damaging(0.951) TCGA-F7-A50J-01 1 37282705 37282705 C G GRIK3 Missense_Mutation p.E683Q 0.11 tolerated(0.12) probably_damaging(0.971) TCGA-F7-A50J-01 1 45120148 45120148 G C TMEM53 3'UTR 0.15 TCGA-F7-A50J-01 1 60392364 60392364 G C CYP2J2 Missense_Mutation p.R19G 0.11 tolerated(0.09) benign(0.01) TCGA-F7-A50J-01 1 72400775 72400775 A C NEGR1 Missense_Mutation p.H132Q 0.17 deleterious(0.03) benign(0.243) TCGA-F7-A50J-01 1 76260352 76260352 G A RABGGTB 3'UTR 0.08 TCGA-F7-A50J-01 1 95305516 95305516 C T SLC44A3 Missense_Mutation p.A228V 0.12 tolerated(0.37) benign(0.005) TCGA-F7-A50J-01 20 23425529 23425529 T C CSTL1 3'UTR 0.35 TCGA-F7-A50J-01 20 2464242 2464242 G A ZNF343 Silent p.H455H 0.07 TCGA-F7-A50J-01 20 32212681 32212681 C G CBFA2T2 Silent p.L277L 0.34 TCGA-F7-A50J-01 20 3262362 3262362 G C C20orf194 Nonsense_Mutation p.S846* 0.07 TCGA-F7-A50J-01 20 43108867 43108867 C T TTPAL Silent p.L76L 0.12 TCGA-F7-A50J-01 20 45224897 45224897 C T SLC13A3 Nonsense_Mutation p.W231* 0.09 TCGA-F7-A50J-01 20 8745842 8745842 C T PLCB1 Nonsense_Mutation p.Q923* 0.13 TCGA-F7-A50J-01 21 16339064 16339064 G C NRIP1 Missense_Mutation p.Q484E 0.09 tolerated(0.2) benign(0.004) TCGA-F7-A50J-01 22 21331013 21331013 C T AIFM3 Silent p.F368F 0.29 TCGA-F7-A50J-01 22 26270302 26270302 A C MYO18B Missense_Mutation p.K1334T 0.32 tolerated(0.06) probably_damaging(0.962) TCGA-F7-A50J-01 22 31059456 31059456 C G DUSP18 Missense_Mutation p.E179Q 0.22 tolerated(0.17) benign(0.021) TCGA-F7-A50J-01 22 36142542 36142542 C T RBFOX2 Missense_Mutation p.A406T 0.17 benign(0.141) TCGA-F7-A50J-01 22 38881948 38881948 G A DDX17 Missense_Mutation p.R730C 0.17 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-F7-A50J-01 2 128263003 128263003 G C IWS1 Missense_Mutation p.S159C 0.18 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-F7-A50J-01 2 152580789 152580789 G A NEB Silent p.T199T 0.25 TCGA-F7-A50J-01 2 158177714 158177714 T G ERMN 3'UTR 0.21 TCGA-F7-A50J-01 2 158397619 158397619 C T ACVR1C Missense_Mutation p.R403Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-F7-A50J-01 2 29754892 29754892 G A ALK Missense_Mutation p.A348V 0.10 tolerated(0.07) possibly_damaging(0.596) TCGA-F7-A50J-01 2 32640716 32640716 C A BIRC6 Nonsense_Mutation p.S786* 0.17 TCGA-F7-A50J-01 2 53992565 53992565 C T ASB3 Missense_Mutation p.E84K 0.12 deleterious(0) probably_damaging(1) TCGA-F7-A50J-01 2 54785848 54785848 A G SPTBN1 Intron 0.12 TCGA-F7-A50J-01 2 74273738 74273738 G T TET3 Missense_Mutation p.A97S 0.09 tolerated(0.18) benign(0.013) TCGA-F7-A50J-01 2 75929421 75929421 C T GCFC2 Missense_Mutation p.E175K 0.26 deleterious(0.03) benign(0.085) TCGA-F7-A50J-01 2 84777021 84777021 G A DNAH6 Missense_Mutation p.R442H 0.24 tolerated(0.2) benign(0.028) TCGA-F7-A50J-01 2 86378626 86378626 C T IMMT Missense_Mutation p.D399N 0.14 deleterious(0) benign(0.305) TCGA-F7-A50J-01 2 9496196 9496196 C G ASAP2 Missense_Mutation p.Q378E 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-F7-A50J-01 3 108475982 108475982 C T RETNLB Silent p.L17L 0.31 TCGA-F7-A50J-01 3 122422803 122422816 ATGGTAGCACATCT - PARP14 Frame_Shift_Del p.N1099Ifs*17 0.19 TCGA-F7-A50J-01 3 159996983 159996983 T G IFT80 Missense_Mutation p.K612Q 0.10 tolerated(0.05) benign(0.069) TCGA-F7-A50J-01 3 164748501 164748501 G A SI Missense_Mutation p.T964M 0.37 tolerated(0.06) possibly_damaging(0.738) TCGA-F7-A50J-01 3 178952146 178952147 - A PIK3CA Frame_Shift_Ins p.N1068Kfs*5 0.26 TCGA-F7-A50J-01 3 184008621 184008621 G T ECE2 Nonsense_Mutation p.E721* 0.07 TCGA-F7-A50J-01 3 42956616 42956616 C A ZNF662 Missense_Mutation p.Q377K 0.07 deleterious(0.02) benign(0.012) TCGA-F7-A50J-01 3 93781841 93781841 T C NSUN3 5'UTR 0.48 TCGA-F7-A50J-01 4 123844268 123844268 C G SPATA5 5'UTR 0.13 TCGA-F7-A50J-01 4 126398448 126398448 G T FAT4 Silent p.L4144L 0.13 TCGA-F7-A50J-01 4 175598261 175598261 G C GLRA3 Missense_Mutation p.Q299E 0.08 tolerated(0.14) possibly_damaging(0.739) TCGA-F7-A50J-01 4 177067180 177067180 G C WDR17 Missense_Mutation p.V546L 0.26 tolerated(0.06) benign(0.257) TCGA-F7-A50J-01 4 3037154 3037154 C T GRK4 Silent p.G437G 0.19 TCGA-F7-A50J-01 4 4199751 4199751 G A OTOP1 Silent p.L270L 0.07 TCGA-F7-A50J-01 4 6864034 6864034 C G KIAA0232 Missense_Mutation p.S642C 0.10 tolerated_low_confidence(0.07) benign(0.046) TCGA-F7-A50J-01 4 73414511 73414511 G A ADAMTS3 Missense_Mutation p.A63V 0.18 deleterious(0.04) benign(0.117) TCGA-F7-A50J-01 4 74963423 74963423 C T CXCL2 3'UTR 0.25 TCGA-F7-A50J-01 4 89658620 89658620 C A FAM13A Intron 0.09 TCGA-F7-A50J-01 4 98633879 98633879 C G STPG2 Missense_Mutation p.E431Q 0.12 deleterious(0.05) benign(0.104) TCGA-F7-A50J-01 5 108714761 108714761 C T PJA2 Missense_Mutation p.E143K 0.18 deleterious(0.02) benign(0.099) TCGA-F7-A50J-01 5 13824339 13824339 C T DNAH5 Missense_Mutation p.R2183H 0.17 possibly_damaging(0.522) TCGA-F7-A50J-01 5 140182628 140182628 G A PCDHA3 Missense_Mutation p.G616S 0.15 tolerated_low_confidence(0.11) benign(0.202) TCGA-F7-A50J-01 5 140347000 140347000 C T PCDHAC2 Missense_Mutation p.R217W 0.11 deleterious(0) probably_damaging(1) TCGA-F7-A50J-01 5 140730249 140730250 - GTCAG PCDHGB1 Frame_Shift_Ins p.A143Gfs*7 0.09 TCGA-F7-A50J-01 5 142680152 142680152 C T NR3C1 Missense_Mutation p.D550N 0.15 deleterious(0) probably_damaging(1) TCGA-F7-A50J-01 5 175110224 175110224 G A HRH2 5'UTR 0.16 TCGA-F7-A50J-01 5 179743800 179743800 C G GFPT2 Silent p.V372V 0.09 TCGA-F7-A50J-01 5 26881172 26881172 A G CDH9 3'UTR 0.35 TCGA-F7-A50J-01 5 6750447 6750447 G A PAPD7 Missense_Mutation p.S314N 0.20 tolerated(1) benign(0) TCGA-F7-A50J-01 6 10557019 10557019 C G GCNT2 Intron 0.14 TCGA-F7-A50J-01 6 160999616 160999616 C A LPA Silent p.S1470S 0.18 TCGA-F7-A50J-01 6 167595385 167595385 G C TCP10L2 Missense_Mutation p.R348T 0.32 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-F7-A50J-01 6 29910357 29910357 C G HLA-A Silent p.L9L 0.15 TCGA-F7-A50J-01 6 38029521 38029526 CTGAAT - ZFAND3 In_Frame_Del p.L89_N90del 0.14 TCGA-F7-A50J-01 6 55216136 55216136 T G GFRAL Silent p.L152L 0.05 TCGA-F7-A50J-01 6 70812088 70812088 G A COL19A1 Missense_Mutation p.G418R 0.10 deleterious(0) unknown(0) TCGA-F7-A50J-01 7 115580995 115580995 C G TFEC Intron 0.08 TCGA-F7-A50J-01 7 1498917 1498917 C G MICALL2 Missense_Mutation p.E16Q 0.15 deleterious(0.01) possibly_damaging(0.886) TCGA-F7-A50J-01 7 21818701 21818701 C T DNAH11 Silent p.I3161I 0.14 TCGA-F7-A50J-01 7 25267994 25267994 G C NPVF Nonsense_Mutation p.S22* 0.18 TCGA-F7-A50J-01 7 38305189 38305189 A G TRGC1 Missense_Mutation p.L31P 0.14 deleterious(0) probably_damaging(1) TCGA-F7-A50J-01 7 48318210 48318210 A T ABCA13 Missense_Mutation p.E2473D 0.19 benign(0.037) TCGA-F7-A50J-01 7 63726909 63726909 G T ZNF679 Nonsense_Mutation p.E300* 0.45 TCGA-F7-A50J-01 7 72277669 72277669 C G TYW1B Missense_Mutation p.R238T 0.15 tolerated(0.41) benign(0.017) TCGA-F7-A50J-01 7 82544334 82544334 G A PCLO Missense_Mutation p.A4323V 0.20 unknown(0) TCGA-F7-A50J-01 7 92731813 92731813 C G SAMD9 Missense_Mutation p.E1200Q 0.19 deleterious(0.02) possibly_damaging(0.817) TCGA-F7-A50J-01 7 95614203 95614203 G T DYNC1I1 Silent p.R236R 0.15 TCGA-F7-A50J-01 8 144993251 144993262 GGCTGCCGCCGC - PLEC In_Frame_Del p.G3713_H3717delinsD 0.11 TCGA-F7-A50J-01 8 38834102 38834102 C T HTRA4 Silent p.F205F 0.09 TCGA-F7-A50J-01 8 57358464 57358464 C T PENK Missense_Mutation p.G17R 0.23 tolerated(0.2) possibly_damaging(0.542) TCGA-F7-A50J-01 9 131231550 131231550 A G ODF2 Missense_Mutation p.D113G 0.10 deleterious(0) benign(0.346) TCGA-F7-A50J-01 9 131870200 131870200 C G CRAT Missense_Mutation p.E62Q 0.11 deleterious(0.03) possibly_damaging(0.681) TCGA-F7-A50J-01 9 138515958 138515958 G A GLT6D1 Silent p.L272L 0.13 TCGA-F7-A50J-01 9 21384911 21384911 G A IFNA2 Silent p.L140L 0.13 TCGA-F7-A50J-01 9 35707817 35707817 G C TLN1 Missense_Mutation p.R1515G 0.10 deleterious(0) benign(0.022) TCGA-F7-A50J-01 9 88247959 88247959 G C AGTPBP1 Missense_Mutation p.Q505E 0.12 tolerated(1) benign(0.023) TCGA-F7-A50J-01 9 96418829 96418829 G A PHF2 Missense_Mutation p.E367K 0.11 deleterious(0) unknown(0) TCGA-F7-A50J-01 X 100177779 100177779 C T XKRX Intron 0.18 TCGA-F7-A50J-01 X 100911996 100911996 C T ARMCX2 Silent p.V193V 0.19 TCGA-F7-A50J-01 X 102968693 102968693 G C TMEM31 Missense_Mutation p.E92Q 0.15 tolerated_low_confidence(1) possibly_damaging(0.859) TCGA-F7-A50J-01 X 106184646 106184646 A G MORC4 3'UTR 0.35 TCGA-F7-A50J-01 X 107979424 107979424 G A IRS4 Missense_Mutation p.P51S 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F7-A50J-01 X 111020092 111020092 G A TRPC5 Missense_Mutation p.R791W 0.11 deleterious(0) possibly_damaging(0.462) TCGA-F7-A50J-01 X 122757984 122757984 C T THOC2 Missense_Mutation p.G1082E 0.06 deleterious(0.02) benign(0.18) TCGA-F7-A50J-01 X 12938750 12938750 C T TLR8 Missense_Mutation p.H531Y 0.12 deleterious(0.03) benign(0.37) TCGA-F7-A50J-01 X 129771375 129771375 G C ENOX2 Nonsense_Mutation p.S409* 0.15 TCGA-F7-A50J-01 X 135455200 135455200 T G GPR112 Missense_Mutation p.Y2585D 0.09 deleterious(0.03) benign(0.156) TCGA-F7-A50J-01 X 135455215 135455215 G C GPR112 Missense_Mutation p.D2590H 0.09 deleterious(0) benign(0.119) TCGA-F7-A50J-01 X 148586584 148586584 C T IDS Silent p.T28T 0.06 TCGA-F7-A50J-01 X 151808895 151808895 G C GABRQ Missense_Mutation p.R69T 0.07 tolerated(0.21) benign(0.005) TCGA-F7-A50J-01 X 152967530 152967530 T A BCAP31 Missense_Mutation p.M279L 0.23 tolerated(0.2) benign(0.104) TCGA-F7-A50J-01 X 153524217 153524217 C T TKTL1 Missense_Mutation p.A2V 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-F7-A50J-01 X 154185290 154185290 C G F8 Missense_Mutation p.G565A 0.11 deleterious(0) probably_damaging(1) TCGA-F7-A50J-01 X 16887242 16887242 G A RBBP7 Nonsense_Mutation p.Q84* 0.14 TCGA-F7-A50J-01 X 1712553 1712553 G T AKAP17A Silent p.T66T 0.10 TCGA-F7-A50J-01 X 23934385 23934385 T C CXorf58 Silent p.H121H 0.28 TCGA-F7-A50J-01 X 34149642 34149642 G C FAM47A Missense_Mutation p.P252A 0.20 tolerated(0.16) probably_damaging(0.981) TCGA-F7-A50J-01 X 34962366 34962366 G C FAM47B Missense_Mutation p.G473A 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A50J-01 X 36162932 36162932 G T CHDC2 3'UTR 0.35 TCGA-F7-A50J-01 X 43809195 43809195 G C NDP Silent p.V84V 0.23 TCGA-F7-A50J-01 X 57367792 57367792 C G FAAH2 Missense_Mutation p.F237L 0.13 deleterious(0) probably_damaging(0.98) TCGA-F7-A50J-01 X 69622516 69622516 A G KIF4A Missense_Mutation p.K864E 0.19 deleterious(0) possibly_damaging(0.579) TCGA-F7-A50J-01 X 70467620 70467620 C A ZMYM3 Missense_Mutation p.E704D 0.25 tolerated(0.05) benign(0.04) TCGA-F7-A50J-01 X 73960759 73960759 T A KIAA2022 Silent p.P1211P 0.11 TCGA-F7-A50J-01 X 99854065 99854065 C G TNMD Silent p.A210A 0.10 TCGA-F7-A61S-01 10 105836188 105836188 C T COL17A1 Splice_Site p.X68_splice 0.12 TCGA-F7-A61S-01 10 28409159 28409159 C A MPP7 Missense_Mutation p.R284M 0.22 deleterious(0) probably_damaging(0.951) TCGA-F7-A61S-01 10 30638178 30638178 C T MTPAP Silent p.L9L 0.17 TCGA-F7-A61S-01 10 5772856 5772856 A C FAM208B Silent p.G298G 0.26 TCGA-F7-A61S-01 11 10622600 10622600 G A MRVI1 Missense_Mutation p.R628C 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A61S-01 11 17432128 17432128 G A ABCC8 Missense_Mutation p.R877W 0.24 deleterious(0.01) benign(0.058) TCGA-F7-A61S-01 11 60163991 60163991 T A MS4A14 5'UTR 0.17 TCGA-F7-A61S-01 11 61067677 61067677 G A DDB1 Silent p.S1118S 0.29 TCGA-F7-A61S-01 11 613849 613849 T A IRF7 Silent p.P274P 0.27 TCGA-F7-A61S-01 11 62295516 62295516 G T AHNAK Missense_Mutation p.H2125N 0.25 benign(0.005) TCGA-F7-A61S-01 11 62656015 62656015 C T SLC3A2 Silent p.S582S 0.19 TCGA-F7-A61S-01 11 64815785 64815785 G A NAALADL1 Missense_Mutation p.T424M 0.14 deleterious(0) probably_damaging(0.943) TCGA-F7-A61S-01 12 121880094 121880094 G T KDM2B Silent p.P1050P 0.36 TCGA-F7-A61S-01 12 13128124 13128124 A C HEBP1 3'UTR 0.23 TCGA-F7-A61S-01 12 30815384 30815385 - A IPO8 Frame_Shift_Ins p.M544Ifs*9 0.17 TCGA-F7-A61S-01 12 86373679 86373679 A C MGAT4C Missense_Mutation p.F275L 0.11 deleterious(0) probably_damaging(1) TCGA-F7-A61S-01 13 25745697 25745697 C T AMER2 Missense_Mutation p.A21T 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-F7-A61S-01 13 29599206 29599206 C T MTUS2 Missense_Mutation p.T134M 0.21 tolerated(0.09) benign(0.003) TCGA-F7-A61S-01 13 78492394 78492394 C T EDNRB Silent p.T195T 0.19 TCGA-F7-A61S-01 13 99099025 99099025 T C FARP1 Missense_Mutation p.S1004P 0.08 deleterious(0) probably_damaging(0.998) TCGA-F7-A61S-01 14 23874911 23874911 C A MYH6 Missense_Mutation p.M90I 0.19 deleterious(0.02) possibly_damaging(0.816) TCGA-F7-A61S-01 14 51206184 51206184 T A NIN Missense_Mutation p.T1824S 0.23 tolerated(0.14) benign(0.015) TCGA-F7-A61S-01 14 91924958 91924958 C T SMEK1 3'UTR 0.38 TCGA-F7-A61S-01 14 93428702 93428702 C T ITPK1 Missense_Mutation p.E168K 0.11 tolerated(0.24) benign(0.193) TCGA-F7-A61S-01 14 95923584 95923584 A G SYNE3 Missense_Mutation p.V240A 0.23 tolerated(0.12) benign(0.001) TCGA-F7-A61S-01 15 25953377 25953377 C T ATP10A Silent p.A805A 0.35 TCGA-F7-A61S-01 15 34105190 34105190 G A RYR3 Missense_Mutation p.E3462K 0.09 benign(0.035) TCGA-F7-A61S-01 15 40566440 40566440 G A PAK6 Missense_Mutation p.R614Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-F7-A61S-01 15 41149144 41149144 G T SPINT1 Missense_Mutation p.V521F 0.11 tolerated(0.19) possibly_damaging(0.728) TCGA-F7-A61S-01 15 54542533 54542533 G A UNC13C Silent p.E1113E 0.29 TCGA-F7-A61S-01 15 55929437 55929437 G C PRTG Missense_Mutation p.R852G 0.08 tolerated(0.28) possibly_damaging(0.745) TCGA-F7-A61S-01 15 59499631 59499631 C T LDHAL6B Silent p.A164A 0.26 TCGA-F7-A61S-01 16 20803433 20803433 A T ACSM3 Missense_Mutation p.D479V 0.29 deleterious(0) probably_damaging(1) TCGA-F7-A61S-01 16 2483041 2483041 C T CCNF Missense_Mutation p.S84F 0.23 deleterious(0) probably_damaging(0.99) TCGA-F7-A61S-01 16 28620068 28620068 G A SULT1A1 Missense_Mutation p.R37W 0.19 tolerated(0.18) benign(0) TCGA-F7-A61S-01 16 88601258 88601258 G T ZFPM1 Silent p.T964T 0.32 TCGA-F7-A61S-01 16 89347680 89347680 G A ANKRD11 Missense_Mutation p.S1757F 0.20 probably_damaging(0.998) TCGA-F7-A61S-01 17 1198837 1198837 G A TUSC5 Missense_Mutation p.R147H 0.13 tolerated(0.06) probably_damaging(0.954) TCGA-F7-A61S-01 17 17062109 17062109 C T MPRIP Silent p.R613R 0.53 TCGA-F7-A61S-01 17 21825535 21825535 C A FAM27L RNA 0.27 TCGA-F7-A61S-01 17 33331551 33331551 G A LIG3 3'UTR 0.28 TCGA-F7-A61S-01 17 51900872 51900872 C T KIF2B Missense_Mutation p.R160W 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-F7-A61S-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.38 deleterious(0) probably_damaging(1) TCGA-F7-A61S-01 18 13884807 13884807 A - MC2R Frame_Shift_Del p.H238Mfs*4 0.21 TCGA-F7-A61S-01 18 32917661 32917661 T G ZNF24 Missense_Mutation p.E214D 0.29 tolerated(0.64) benign(0.217) TCGA-F7-A61S-01 18 60609124 60609124 A G PHLPP1 Missense_Mutation p.Y1045C 0.27 deleterious(0) probably_damaging(0.982) TCGA-F7-A61S-01 19 1615665 1615666 - CCGA TCF3 Intron 0.23 TCGA-F7-A61S-01 19 3614477 3614477 T A CACTIN Missense_Mutation p.I425F 0.22 deleterious(0) possibly_damaging(0.643) TCGA-F7-A61S-01 19 46522516 46522516 G A PGLYRP1 Missense_Mutation p.P191S 0.20 tolerated(0.07) benign(0.007) TCGA-F7-A61S-01 19 49464396 49464396 C T BAX 3'UTR 0.28 TCGA-F7-A61S-01 19 52497257 52497257 G A ZNF615 Missense_Mutation p.R369C 0.25 tolerated(0.09) probably_damaging(0.953) TCGA-F7-A61S-01 19 58361364 58361364 A C ZNF587 5'UTR 0.28 TCGA-F7-A61S-01 19 6190690 6190690 C T ACSBG2 3'UTR 0.07 TCGA-F7-A61S-01 19 881689 881689 G C MED16 Silent p.L337L 0.09 TCGA-F7-A61S-01 1 109477475 109477475 G C CLCC1 Missense_Mutation p.S491R 0.27 deleterious(0.03) benign(0.166) TCGA-F7-A61S-01 1 150445606 150445606 C T RPRD2 Silent p.S1394S 0.17 TCGA-F7-A61S-01 1 155230365 155230365 G A SCAMP3 Missense_Mutation p.P77L 0.21 deleterious(0) possibly_damaging(0.821) TCGA-F7-A61S-01 1 176918380 176918380 G A ASTN1 Silent p.L665L 0.14 TCGA-F7-A61S-01 1 183596665 183596665 G C ARPC5 3'UTR 0.17 TCGA-F7-A61S-01 1 198668713 198668713 C T PTPRC Missense_Mutation p.P107S 0.30 tolerated(0.07) benign(0.209) TCGA-F7-A61S-01 1 210014234 210014234 C G DIEXF Missense_Mutation p.A440G 0.13 deleterious(0.01) possibly_damaging(0.752) TCGA-F7-A61S-01 1 22176563 22176563 G A HSPG2 Missense_Mutation p.R2473C 0.20 probably_damaging(0.996) TCGA-F7-A61S-01 1 227257552 227257552 T C CDC42BPA Missense_Mutation p.I944V 0.12 tolerated(0.41) benign(0.001) TCGA-F7-A61S-01 1 248685522 248685522 C T OR2G6 Missense_Mutation p.T192M 0.27 deleterious(0) probably_damaging(0.966) TCGA-F7-A61S-01 1 32051466 32051466 C G TINAGL1 Silent p.V402V 0.29 TCGA-F7-A61S-01 1 51829611 51829611 G A EPS15 Silent p.V762V 0.26 TCGA-F7-A61S-01 1 67160169 67160169 C T SGIP1 Intron 0.26 TCGA-F7-A61S-01 20 25456763 25456763 T C NINL Missense_Mutation p.K1055R 0.45 tolerated(0.3) benign(0.008) TCGA-F7-A61S-01 20 44751845 44751845 C T CD40 Missense_Mutation p.H162Y 0.38 tolerated(0.12) benign(0.015) TCGA-F7-A61S-01 20 48124481 48124481 G C PTGIS Silent p.P493P 0.24 TCGA-F7-A61S-01 20 62273569 62273570 - T STMN3 Frame_Shift_Ins p.N125Kfs*2 0.20 TCGA-F7-A61S-01 21 19169235 19169235 A - C21orf91 Frame_Shift_Del p.S110Lfs*38 0.18 TCGA-F7-A61S-01 22 29704529 29704529 G A GAS2L1 Missense_Mutation p.R145Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-F7-A61S-01 22 50297857 50297857 G T ALG12 Missense_Mutation p.S403Y 0.19 probably_damaging(0.998) TCGA-F7-A61S-01 22 50845169 50845169 C T PPP6R2 Silent p.S93S 0.55 TCGA-F7-A61S-01 2 100185340 100185340 G A AFF3 Nonsense_Mutation p.R1011* 0.16 TCGA-F7-A61S-01 2 130951871 130951871 C T TUBA3E Missense_Mutation p.V182M 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-F7-A61S-01 2 132237810 132237810 G A TUBA3D Missense_Mutation p.V182M 0.09 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-F7-A61S-01 2 152298457 152298457 A G RIF1 Silent p.K562K 0.14 TCGA-F7-A61S-01 2 168105298 168105298 G A XIRP2 Missense_Mutation p.V2466I 0.08 benign(0.015) TCGA-F7-A61S-01 2 188247925 188247925 C G CALCRL Missense_Mutation p.M53I 0.05 tolerated(0.58) benign(0.001) TCGA-F7-A61S-01 2 196545000 196545001 - T SLC39A10 Frame_Shift_Ins p.G81Wfs*18 0.17 TCGA-F7-A61S-01 2 202248909 202248909 G A TRAK2 Missense_Mutation p.S665L 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-F7-A61S-01 2 204016213 204016213 C G NBEAL1 Missense_Mutation p.L1801V 0.28 tolerated(0.07) benign(0.078) TCGA-F7-A61S-01 2 233651923 233651923 C G GIGYF2 Nonsense_Mutation p.S221* 0.21 TCGA-F7-A61S-01 2 234104109 234104109 C T INPP5D Silent p.H875H 0.20 TCGA-F7-A61S-01 2 27600959 27600960 - AGCCTT ZNF513 Nonsense_Mutation p.G359_F360ins* 0.22 TCGA-F7-A61S-01 2 55254030 55254030 T C RTN4 Missense_Mutation p.D402G 0.18 tolerated(1) benign(0.003) TCGA-F7-A61S-01 2 64147706 64147706 A G VPS54 Missense_Mutation p.M642T 0.13 deleterious(0.01) benign(0.008) TCGA-F7-A61S-01 2 71649996 71649996 G A ZNF638 Missense_Mutation p.D1118N 0.23 tolerated(0.17) possibly_damaging(0.697) TCGA-F7-A61S-01 2 96652499 96652499 C G ANKRD36C Missense_Mutation p.E162D 0.26 deleterious(0) benign(0.001) TCGA-F7-A61S-01 3 122145946 122145946 C T KPNA1 Silent p.E501E 0.35 TCGA-F7-A61S-01 3 169546595 169546595 A T LRRIQ4 Missense_Mutation p.T357S 0.20 tolerated(0.71) benign(0.315) TCGA-F7-A61S-01 3 169557876 169557876 A T LRRC31 Missense_Mutation p.I518K 0.40 deleterious(0) possibly_damaging(0.556) TCGA-F7-A61S-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.42 tolerated(0.11) possibly_damaging(0.529) TCGA-F7-A61S-01 3 196509524 196509524 G C PAK2 Missense_Mutation p.D3H 0.08 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-F7-A61S-01 3 49200836 49200836 C T CCDC71 Missense_Mutation p.R269Q 0.19 tolerated(0.42) benign(0.062) TCGA-F7-A61S-01 3 51477888 51477888 G A VPRBP Missense_Mutation p.A136V 0.12 deleterious(0) possibly_damaging(0.487) TCGA-F7-A61S-01 3 52437163 52437163 G A BAP1 Silent p.Y627Y 0.14 TCGA-F7-A61S-01 3 77629164 77629164 G A ROBO2 Missense_Mutation p.V815I 0.20 tolerated(0.09) benign(0.312) TCGA-F7-A61S-01 4 141543531 141543531 G A TBC1D9 Missense_Mutation p.R1207W 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.634) TCGA-F7-A61S-01 4 153884004 153884004 T A FHDC1 Missense_Mutation p.L297M 0.11 deleterious(0) probably_damaging(1) TCGA-F7-A61S-01 4 155533757 155533757 C T FGG Missense_Mutation p.S2N 0.27 tolerated_low_confidence(0.1) benign(0.003) TCGA-F7-A61S-01 4 169815875 169815875 C A PALLD Intron 0.36 TCGA-F7-A61S-01 4 187538955 187538955 C A FAT1 Nonsense_Mutation p.E2929* 0.18 TCGA-F7-A61S-01 4 41985017 41985017 G A DCAF4L1 3'UTR 0.27 TCGA-F7-A61S-01 4 69681978 69681978 A G UGT2B10 Missense_Mutation p.T81A 0.32 deleterious(0.05) benign(0.021) TCGA-F7-A61S-01 5 140529944 140529944 G A PCDHB6 Missense_Mutation p.E36K 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-F7-A61S-01 5 140603673 140603673 C G PCDHB14 Missense_Mutation p.A199G 0.20 deleterious_low_confidence(0.03) benign(0.155) TCGA-F7-A61S-01 5 140812419 140812419 C A PCDHGA12 Missense_Mutation p.A698D 0.21 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-F7-A61S-01 5 149677718 149677718 T A ARSI Missense_Mutation p.N257Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-F7-A61S-01 5 15936738 15936738 C T FBXL7 Missense_Mutation p.R307C 0.23 deleterious(0) probably_damaging(0.998) TCGA-F7-A61S-01 5 24487949 24487949 G A CDH10 Silent p.Y730Y 0.26 TCGA-F7-A61S-01 5 34998834 34998834 C T AGXT2 Missense_Mutation p.R512K 0.14 tolerated(0.35) benign(0.002) TCGA-F7-A61S-01 5 56167859 56167859 G T MAP3K1 Splice_Site p.X475_splice 0.21 TCGA-F7-A61S-01 5 80600958 80600958 A G ZCCHC9 Missense_Mutation p.M128V 0.10 deleterious(0.02) benign(0.284) TCGA-F7-A61S-01 6 132859647 132859647 G A TAAR9 Silent p.S73S 0.30 TCGA-F7-A61S-01 6 139202177 139202177 G A ECT2L Silent p.Q583Q 0.30 TCGA-F7-A61S-01 6 30638812 30638812 C T DHX16 Splice_Site p.X149_splice 0.22 TCGA-F7-A61S-01 6 30672770 30672770 T A MDC1 Missense_Mutation p.N1397I 0.28 tolerated(0.44) benign(0.05) TCGA-F7-A61S-01 6 36887446 36887447 TG - C6orf89 Frame_Shift_Del p.V314Gfs*58 0.18 TCGA-F7-A61S-01 6 6167791 6167791 G A F13A1 Missense_Mutation p.A603V 0.21 deleterious(0) possibly_damaging(0.906) TCGA-F7-A61S-01 6 96034901 96034901 A G MANEA Intron 0.28 TCGA-F7-A61S-01 7 100033541 100033541 C T PPP1R35 Silent p.A127A 0.12 TCGA-F7-A61S-01 7 140111745 140111745 C T RAB19 Silent p.H91H 0.05 TCGA-F7-A61S-01 7 4900349 4900349 C T PAPOLB Missense_Mutation p.A364T 0.20 tolerated(0.09) possibly_damaging(0.827) TCGA-F7-A61S-01 7 64452930 64452930 C T ERV3-1 Missense_Mutation p.D159N 0.08 tolerated(0.55) benign(0.387) TCGA-F7-A61S-01 7 93633534 93633534 C A BET1 5'UTR 0.38 TCGA-F7-A61S-01 7 94024316 94024316 A C COL1A2 5'UTR 0.12 TCGA-F7-A61S-01 8 144400209 144400209 G A TOP1MT Silent p.D398D 0.31 TCGA-F7-A61S-01 8 76456182 76456182 C T HNF4G Silent p.R75R 0.23 TCGA-F7-A61S-01 9 139301921 139301921 C A SDCCAG3 Missense_Mutation p.E165D 0.23 tolerated(0.05) benign(0.197) TCGA-F7-A61S-01 9 14720279 14720279 A T CER1 Missense_Mutation p.S205T 0.20 tolerated(0.11) benign(0.003) TCGA-F7-A61S-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.33 TCGA-F7-A61S-01 9 69200202 69200202 G A FOXD4L6 3'UTR 0.22 TCGA-F7-A61S-01 9 71152389 71152389 G T TMEM252 Missense_Mutation p.A100D 0.15 deleterious(0) probably_damaging(0.96) TCGA-F7-A61S-01 9 98238420 98238420 T A PTCH1 Nonsense_Mutation p.K542* 0.19 TCGA-F7-A61S-01 X 27766662 27766662 T C DCAF8L2 Silent p.L550L 0.44 TCGA-F7-A61S-01 X 32486771 32486771 A T DMD Silent p.T1002T 0.63 TCGA-F7-A61S-01 X 34962046 34962046 C T FAM47B Silent p.G366G 0.65 TCGA-F7-A61S-01 X 74670662 74670662 C T ZDHHC15 Silent p.P118P 0.21 TCGA-F7-A61V-01 10 118713579 118713579 G A KIAA1598 Missense_Mutation p.S137L 0.22 deleterious(0.02) possibly_damaging(0.867) TCGA-F7-A61V-01 10 25144250 25144250 C T PRTFDC1 Missense_Mutation p.D184N 0.41 deleterious(0.02) benign(0.019) TCGA-F7-A61V-01 10 64574192 64574192 C G EGR2 Missense_Mutation p.R69T 0.24 tolerated(0.58) possibly_damaging(0.879) TCGA-F7-A61V-01 10 98744493 98744493 G A C10orf12 Missense_Mutation p.D1116N 0.33 deleterious(0.01) possibly_damaging(0.869) TCGA-F7-A61V-01 10 99349663 99349663 G A C10orf62 Nonsense_Mutation p.W3* 0.23 TCGA-F7-A61V-01 11 116649620 116649620 T C ZNF259 3'UTR 0.14 TCGA-F7-A61V-01 11 1213509 1213509 G A MUC5AC RNA 0.05 TCGA-F7-A61V-01 11 64066993 64066993 C A KCNK4 Missense_Mutation p.A326D 0.21 tolerated(0.58) benign(0.058) TCGA-F7-A61V-01 11 64120307 64120307 C T CCDC88B Missense_Mutation p.R1150W 0.16 deleterious(0) probably_damaging(0.996) TCGA-F7-A61V-01 11 76903103 76903103 C T MYO7A Missense_Mutation p.S1311F 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A61V-01 11 76903206 76903206 C A MYO7A Missense_Mutation p.F1345L 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-F7-A61V-01 11 821849 821849 G A PNPLA2 Missense_Mutation p.E137K 0.34 deleterious(0) probably_damaging(0.997) TCGA-F7-A61V-01 11 85961378 85961378 G A EED Missense_Mutation p.R52H 0.24 deleterious(0.02) probably_damaging(0.988) TCGA-F7-A61V-01 12 101796647 101796647 T C ARL1 Missense_Mutation p.I74V 0.37 deleterious(0.01) possibly_damaging(0.884) TCGA-F7-A61V-01 12 28122338 28122338 G A PTHLH Silent p.L30L 0.29 TCGA-F7-A61V-01 12 28122409 28122409 G A PTHLH Nonsense_Mutation p.Q7* 0.35 TCGA-F7-A61V-01 12 2944011 2944011 G T NRIP2 Missense_Mutation p.P47T 0.35 tolerated_low_confidence(0.37) benign(0.002) TCGA-F7-A61V-01 12 46758449 46758449 C A SLC38A2 Missense_Mutation p.C228F 0.32 tolerated(0.14) possibly_damaging(0.859) TCGA-F7-A61V-01 12 54447714 54447714 T A HOXC4 Missense_Mutation p.M3K 0.35 deleterious(0) possibly_damaging(0.879) TCGA-F7-A61V-01 12 58006952 58006952 A C ARHGEF25 Intron 0.22 TCGA-F7-A61V-01 12 94673260 94673260 G A PLXNC1 Missense_Mutation p.V1204I 0.31 tolerated(0.6) benign(0.001) TCGA-F7-A61V-01 12 9994936 9994936 A G KLRF1 Missense_Mutation p.N165S 0.27 tolerated(0.79) benign(0.038) TCGA-F7-A61V-01 13 110853209 110853209 C T COL4A1 Missense_Mutation p.G371E 0.23 unknown(0) TCGA-F7-A61V-01 13 49771952 49771952 G T FNDC3A Missense_Mutation p.G811V 0.27 tolerated(0.18) benign(0.014) TCGA-F7-A61V-01 13 66879158 66879158 C A PCDH9 Missense_Mutation p.G1115W 0.30 tolerated(0.19) probably_damaging(0.924) TCGA-F7-A61V-01 13 96546844 96546844 C A UGGT2 Missense_Mutation p.D943Y 0.22 deleterious(0) probably_damaging(0.936) TCGA-F7-A61V-01 14 105408332 105408332 C A AHNAK2 Missense_Mutation p.V4486L 0.29 benign(0.029) TCGA-F7-A61V-01 14 105416213 105416213 G T AHNAK2 Missense_Mutation p.L1859I 0.27 benign(0.226) TCGA-F7-A61V-01 14 105821492 105821492 C T PACS2 Missense_Mutation p.A134V 0.27 tolerated(1) benign(0.001) TCGA-F7-A61V-01 14 39815174 39815174 G A CTAGE5 Missense_Mutation p.R638K 0.29 tolerated(0.07) benign(0.059) TCGA-F7-A61V-01 14 80158594 80158594 T C NRXN3 Intron 0.13 TCGA-F7-A61V-01 14 95670794 95670794 T C CLMN Missense_Mutation p.I298V 0.21 tolerated(0.11) benign(0.002) TCGA-F7-A61V-01 15 22368779 22368779 C A OR4M2 Missense_Mutation p.F68L 0.15 tolerated(0.07) benign(0.008) TCGA-F7-A61V-01 15 35168166 35168166 C T AQR Silent p.E1069E 0.23 TCGA-F7-A61V-01 15 43020903 43020903 G T CDAN1 Silent p.I917I 0.27 TCGA-F7-A61V-01 15 49052444 49052444 T C CEP152 Missense_Mutation p.N861S 0.33 tolerated(0.08) benign(0.324) TCGA-F7-A61V-01 15 69728029 69728029 C G KIF23 Missense_Mutation p.F397L 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-F7-A61V-01 15 81046671 81046671 G T ABHD17C Missense_Mutation p.R317I 0.18 deleterious(0) probably_damaging(0.988) TCGA-F7-A61V-01 16 28943929 28943929 C A CD19 Silent p.G117G 0.30 TCGA-F7-A61V-01 16 30735384 30735384 C T SRCAP Missense_Mutation p.P1547S 0.18 possibly_damaging(0.641) TCGA-F7-A61V-01 16 56974109 56974109 C T HERPUD1 Missense_Mutation p.S286F 0.32 deleterious(0) probably_damaging(0.999) TCGA-F7-A61V-01 16 71571477 71571477 G T CHST4 Missense_Mutation p.L299F 0.14 deleterious(0.04) benign(0.198) TCGA-F7-A61V-01 16 74927630 74927631 - A WDR59 Frame_Shift_Ins p.Q650Pfs*23 0.26 TCGA-F7-A61V-01 17 1549665 1549665 G A RILP 3'UTR 0.54 TCGA-F7-A61V-01 17 40134298 40134298 C T DNAJC7 Silent p.R402R 0.39 TCGA-F7-A61V-01 17 48278778 48278778 C A COL1A1 Nonsense_Mutation p.E33* 0.28 TCGA-F7-A61V-01 17 59770874 59770874 C G BRIP1 Splice_Site p.X831_splice 0.19 TCGA-F7-A61V-01 17 72741214 72741217 CCAT - RAB37 Frame_Shift_Del p.I192Pfs*4 0.33 TCGA-F7-A61V-01 17 7345999 7345999 T C FGF11 Silent p.R165R 0.59 TCGA-F7-A61V-01 17 7578406 7578414 CGCCTCACA - TP53 In_Frame_Del p.V173_R175del 0.45 TCGA-F7-A61V-01 17 80696461 80696461 C T FN3K Missense_Mutation p.P80S 0.27 tolerated(0.1) benign(0.344) TCGA-F7-A61V-01 18 21512157 21512157 A - LAMA3 Frame_Shift_Del p.N2871Ifs*5 0.26 TCGA-F7-A61V-01 18 28711433 28711433 G A DSC1 Intron 0.25 TCGA-F7-A61V-01 19 11617043 11617043 C T ECSIT Missense_Mutation p.E418K 0.26 tolerated(0.21) benign(0.188) TCGA-F7-A61V-01 19 18497036 18497036 C G GDF15 Missense_Mutation p.Q13E 0.27 tolerated_low_confidence(0.74) benign(0.015) TCGA-F7-A61V-01 19 18780083 18780083 G A KLHL26 3'UTR 0.17 TCGA-F7-A61V-01 19 36135623 36135623 C T ETV2 Missense_Mutation p.R300C 0.28 deleterious(0) probably_damaging(1) TCGA-F7-A61V-01 19 36135766 36135766 C G ETV2 3'UTR 0.36 TCGA-F7-A61V-01 19 55143173 55143173 G A LILRB1 Missense_Mutation p.C98Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-F7-A61V-01 19 56220391 56220391 C G NLRP9 Missense_Mutation p.D955H 0.25 deleterious(0.04) possibly_damaging(0.862) TCGA-F7-A61V-01 19 57176541 57176541 A T ZNF835 Missense_Mutation p.L9H 0.12 deleterious(0.01) benign(0.184) TCGA-F7-A61V-01 19 7569253 7569253 G A C19orf45 Silent p.S246S 0.27 TCGA-F7-A61V-01 1 144994657 144994657 G T PDE4DIP Silent p.R25R 0.11 TCGA-F7-A61V-01 1 152280521 152280521 G T FLG Missense_Mutation p.H2281N 0.03 benign(0.107) TCGA-F7-A61V-01 1 160109760 160109760 G A ATP1A2 Missense_Mutation p.R1007Q 0.30 deleterious(0) possibly_damaging(0.686) TCGA-F7-A61V-01 1 178854323 178854323 G A RALGPS2 Silent p.R339R 0.28 TCGA-F7-A61V-01 1 179877788 179877788 G T TOR1AIP1 Missense_Mutation p.R296I 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A61V-01 1 185833633 185833633 G T HMCN1 Missense_Mutation p.G124V 0.21 probably_damaging(0.969) TCGA-F7-A61V-01 1 19181360 19181360 G A TAS1R2 Missense_Mutation p.R202C 0.37 deleterious(0.04) possibly_damaging(0.893) TCGA-F7-A61V-01 1 196458986 196458986 G C KCNT2 Missense_Mutation p.P86R 0.23 deleterious(0.04) benign(0.241) TCGA-F7-A61V-01 1 19670881 19670881 T A CAPZB Silent p.G234G 0.25 TCGA-F7-A61V-01 1 197390404 197390404 C T CRB1 Silent p.I482I 0.32 TCGA-F7-A61V-01 1 216420132 216420132 A G USH2A Silent p.C868C 0.05 TCGA-F7-A61V-01 1 23415528 23415528 A G LUZP1 Missense_Mutation p.C1031R 0.20 tolerated_low_confidence(0.3) benign(0.15) TCGA-F7-A61V-01 1 38079439 38079439 C A RSPO1 Missense_Mutation p.A188S 0.21 tolerated(1) benign(0.002) TCGA-F7-A61V-01 20 33680588 33680588 T G TRPC4AP 5'UTR 0.38 TCGA-F7-A61V-01 20 60589725 60589725 T C TAF4 Missense_Mutation p.M467V 0.34 benign(0.002) TCGA-F7-A61V-01 22 39710694 39710694 C G RPL3 Missense_Mutation p.K282N 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-F7-A61V-01 22 39710705 39710705 C T RPL3 Missense_Mutation p.E279K 0.25 deleterious(0.04) possibly_damaging(0.694) TCGA-F7-A61V-01 22 39713611 39713611 C A RPL3 Nonsense_Mutation p.E74* 0.25 TCGA-F7-A61V-01 22 46749736 46749736 A G TRMU Missense_Mutation p.K282R 0.26 tolerated(0.08) possibly_damaging(0.483) TCGA-F7-A61V-01 22 51018459 51018459 C T CHKB Missense_Mutation p.E291K 0.20 tolerated(0.06) benign(0.042) TCGA-F7-A61V-01 2 168106093 168106093 A C XIRP2 Missense_Mutation p.S2731R 0.09 benign(0.032) TCGA-F7-A61V-01 2 176988200 176988200 G T HOXD9 Missense_Mutation p.G235V 0.29 tolerated(0.29) possibly_damaging(0.538) TCGA-F7-A61V-01 2 190717430 190717430 C T PMS1 Missense_Mutation p.T250I 0.28 deleterious(0) probably_damaging(0.954) TCGA-F7-A61V-01 2 191362215 191362216 - T MFSD6 Frame_Shift_Ins p.A649Sfs*18 0.21 TCGA-F7-A61V-01 2 196825355 196825355 G T DNAH7 Silent p.L840L 0.30 TCGA-F7-A61V-01 2 202626249 202626249 C T ALS2 Silent p.A156A 0.44 TCGA-F7-A61V-01 2 219296613 219296613 C A VIL1 Missense_Mutation p.S379Y 0.64 deleterious(0.01) benign(0.212) TCGA-F7-A61V-01 2 220506439 220506440 - T SLC4A3 Frame_Shift_Ins p.M1257Ifs*20 0.34 TCGA-F7-A61V-01 2 85836039 85836039 C T C2orf68 3'UTR 0.29 TCGA-F7-A61V-01 3 108188927 108188927 C A MYH15 Missense_Mutation p.G526C 0.27 deleterious(0) probably_damaging(0.999) TCGA-F7-A61V-01 3 119886626 119886626 G A GPR156 Silent p.T566T 0.23 TCGA-F7-A61V-01 3 120365178 120365178 C A HGD Missense_Mutation p.E195D 0.22 tolerated(0.15) benign(0.003) TCGA-F7-A61V-01 3 141499650 141499650 G T GRK7 Missense_Mutation p.Q349H 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-F7-A61V-01 3 183905522 183905522 A G ABCF3 Missense_Mutation p.K140R 0.41 tolerated(0.27) benign(0.002) TCGA-F7-A61V-01 3 89498523 89498523 A G EPHA3 Missense_Mutation p.D832G 0.06 deleterious(0) probably_damaging(0.998) TCGA-F7-A61V-01 4 175158592 175158592 T C FBXO8 Missense_Mutation p.I311V 0.30 tolerated(0.56) benign(0.297) TCGA-F7-A61V-01 4 187004364 187004364 G A TLR3 Silent p.L508L 0.21 TCGA-F7-A61V-01 4 57333850 57333850 G A SRP72 Missense_Mutation p.E17K 0.17 deleterious(0.01) possibly_damaging(0.881) TCGA-F7-A61V-01 4 90816327 90816327 C G MMRN1 Missense_Mutation p.P69A 0.18 tolerated_low_confidence(0.17) benign(0.043) TCGA-F7-A61V-01 5 102353044 102353044 G C PAM Missense_Mutation p.D780H 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-F7-A61V-01 5 134223674 134223674 C A TXNDC15 Missense_Mutation p.F131L 0.30 tolerated(0.43) benign(0.006) TCGA-F7-A61V-01 5 134223748 134223748 C T TXNDC15 Missense_Mutation p.S156F 0.38 deleterious(0.04) benign(0.332) TCGA-F7-A61V-01 5 140589766 140589766 C A PCDHB12 Silent p.P429P 0.57 TCGA-F7-A61V-01 5 140718660 140718660 G C PCDHGA2 Missense_Mutation p.R41T 0.27 deleterious_low_confidence(0.01) benign(0.012) TCGA-F7-A61V-01 5 15928350 15928350 C T FBXL7 Missense_Mutation p.T160M 0.24 tolerated(0.1) benign(0.002) TCGA-F7-A61V-01 5 34923315 34923315 T G BRIX1 Missense_Mutation p.N213K 0.08 tolerated(0.08) benign(0.248) TCGA-F7-A61V-01 5 37064695 37064695 G C NIPBL Missense_Mutation p.D2706H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.898) TCGA-F7-A61V-01 5 73931269 73931269 G T ENC1 Silent p.R348R 0.45 TCGA-F7-A61V-01 6 150719516 150719516 C T IYD 3'UTR 0.50 TCGA-F7-A61V-01 6 158509796 158509796 C T SYNJ2 Nonsense_Mutation p.Q1150* 0.23 TCGA-F7-A61V-01 6 29556329 29556329 T G OR2H2 Missense_Mutation p.F203C 0.28 deleterious(0.01) possibly_damaging(0.8) TCGA-F7-A61V-01 6 90421860 90421860 A C MDN1 Missense_Mutation p.L2516V 0.28 benign(0.348) TCGA-F7-A61V-01 7 141952346 141952346 G T PRSS58 Silent p.I174I 0.21 TCGA-F7-A61V-01 7 39504009 39504009 C T POU6F2 Silent p.I600I 0.25 TCGA-F7-A61V-01 7 73117273 73117273 C T STX1A Missense_Mutation p.E194K 0.23 deleterious(0) probably_damaging(0.997) TCGA-F7-A61V-01 8 144644483 144644483 C T GSDMD Silent p.L367L 0.38 TCGA-F7-A61V-01 8 144943115 144943115 G C EPPK1 Nonsense_Mutation p.S1436* 0.24 TCGA-F7-A61V-01 8 144943213 144943213 G T EPPK1 Missense_Mutation p.F1403L 0.20 probably_damaging(0.985) TCGA-F7-A61V-01 8 89058940 89058940 C A MMP16 Silent p.G482G 0.31 TCGA-F7-A61V-01 9 139934263 139934263 C T NPDC1 Silent p.A313A 0.26 TCGA-F7-A61V-01 9 35714267 35714267 G A TLN1 Missense_Mutation p.A1030V 0.33 deleterious(0.02) probably_damaging(0.972) TCGA-F7-A61V-01 9 405019 405019 T G DOCK8 Missense_Mutation p.F1112L 0.25 tolerated(0.7) benign(0.02) TCGA-F7-A61V-01 9 4622510 4622510 C T SPATA6L Missense_Mutation p.V166M 0.24 deleterious(0) probably_damaging(0.948) TCGA-F7-A61V-01 9 71152264 71152264 C T TMEM252 Missense_Mutation p.E142K 0.34 deleterious(0.02) probably_damaging(0.99) TCGA-F7-A61V-01 9 74489704 74489704 T C ABHD17B Missense_Mutation p.H98R 0.33 deleterious(0) probably_damaging(0.982) TCGA-F7-A61V-01 9 80921300 80921300 G A PSAT1 Silent p.T156T 0.29 TCGA-F7-A61V-01 X 108708493 108708493 G A GUCY2F Missense_Mutation p.L304F 0.57 deleterious(0.04) benign(0.015) TCGA-F7-A61V-01 X 129201241 129201241 G A ELF4 Missense_Mutation p.L483F 0.52 tolerated(0.34) probably_damaging(0.998) TCGA-F7-A61W-01 10 104250323 104250323 T C ACTR1A Silent p.K32K 0.25 TCGA-F7-A61W-01 10 120889085 120889085 G A FAM45A Silent p.V251V 0.32 TCGA-F7-A61W-01 10 13701485 13701485 T C FRMD4A Missense_Mutation p.H635R 0.21 deleterious(0.04) benign(0.328) TCGA-F7-A61W-01 10 46250521 46250521 G A FAM21C Missense_Mutation p.D460N 0.20 tolerated(0.97) benign(0.244) TCGA-F7-A61W-01 10 46250556 46250556 T C FAM21C Silent p.S471S 0.56 TCGA-F7-A61W-01 10 74813231 74813232 AG - P4HA1 Frame_Shift_Del p.L194Gfs*2 0.32 TCGA-F7-A61W-01 10 92982556 92982556 C T PCGF5 5'UTR 0.55 TCGA-F7-A61W-01 10 96106181 96106181 C A NOC3L Splice_Site p.X463_splice 0.25 TCGA-F7-A61W-01 10 98307666 98307666 T C TM9SF3 Missense_Mutation p.Y347C 0.33 deleterious(0) probably_damaging(0.999) TCGA-F7-A61W-01 11 26714150 26714150 T C SLC5A12 Splice_Site p.X347_splice 0.07 TCGA-F7-A61W-01 11 55798145 55798145 A T OR5AS1 Missense_Mutation p.N84I 0.44 deleterious(0.01) probably_damaging(0.914) TCGA-F7-A61W-01 11 6789864 6789864 T C OR2AG2 Missense_Mutation p.S109G 0.29 tolerated(1) benign(0) TCGA-F7-A61W-01 12 112481439 112481439 T C NAA25 Missense_Mutation p.K747R 0.37 tolerated(0.55) benign(0.002) TCGA-F7-A61W-01 12 124859003 124859003 T C NCOR2 Missense_Mutation p.H725R 0.63 unknown(0) TCGA-F7-A61W-01 12 130185052 130185052 G A TMEM132D Missense_Mutation p.P91S 0.30 deleterious(0) probably_damaging(0.996) TCGA-F7-A61W-01 12 132393211 132393211 C A ULK1 Missense_Mutation p.D113E 0.32 deleterious(0.04) probably_damaging(0.994) TCGA-F7-A61W-01 12 133727720 133727720 A G CTD-2140B24.4 Missense_Mutation p.Y47C 0.42 deleterious(0.01) benign(0.023) TCGA-F7-A61W-01 12 7842783 7842783 G A GDF3 Silent p.N262N 0.41 TCGA-F7-A61W-01 12 93150134 93150134 C G PLEKHG7 Missense_Mutation p.H223D 0.20 tolerated(0.24) benign(0.001) TCGA-F7-A61W-01 13 36700177 36700177 G A DCLK1 Missense_Mutation p.P33L 0.66 deleterious(0) unknown(0) TCGA-F7-A61W-01 14 104641958 104641958 A T KIF26A Missense_Mutation p.R945W 0.38 deleterious(0.02) benign(0.01) TCGA-F7-A61W-01 14 61439097 61439097 C T TRMT5 3'UTR 0.24 TCGA-F7-A61W-01 14 70713010 70713010 T C ADAM21P1 RNA 0.14 TCGA-F7-A61W-01 15 20496736 20496736 C G CHEK2P2 RNA 0.20 TCGA-F7-A61W-01 15 63866570 63866570 A T USP3 Missense_Mutation p.N355I 0.35 deleterious(0.02) possibly_damaging(0.878) TCGA-F7-A61W-01 15 77346572 77346572 T C TSPAN3 Missense_Mutation p.N127S 0.41 tolerated(0.06) benign(0.031) TCGA-F7-A61W-01 15 81614837 81614837 C T STARD5 Nonsense_Mutation p.W65* 0.08 TCGA-F7-A61W-01 16 23226426 23226426 C A SCNN1G Missense_Mutation p.S529Y 0.42 deleterious(0) probably_damaging(1) TCGA-F7-A61W-01 16 70986369 70986369 G A HYDIN Silent p.S2162S 0.56 TCGA-F7-A61W-01 17 7576862 7576863 - A TP53 Frame_Shift_Ins p.T329Hfs*8 0.46 TCGA-F7-A61W-01 18 2732289 2732289 G T SMCHD1 Missense_Mutation p.E1025D 0.35 tolerated(0.07) benign(0.079) TCGA-F7-A61W-01 18 674120 674120 T C ENOSF1 3'UTR 0.52 TCGA-F7-A61W-01 19 39214357 39214357 C A ACTN4 Missense_Mutation p.L516M 0.38 deleterious(0) probably_damaging(0.997) TCGA-F7-A61W-01 19 40504315 40504315 A G ZNF546 Missense_Mutation p.M28V 0.15 tolerated(0.5) benign(0) TCGA-F7-A61W-01 19 43258439 43258439 G A PSG8 3'UTR 0.21 TCGA-F7-A61W-01 19 44981361 44981361 A T ZNF180 Missense_Mutation p.F446Y 0.44 deleterious(0.05) probably_damaging(0.999) TCGA-F7-A61W-01 19 54618798 54618798 T A TFPT 5'UTR 0.59 TCGA-F7-A61W-01 19 5786534 5786534 T G DUS3L Silent p.S502S 0.73 TCGA-F7-A61W-01 19 58385140 58385140 G T ZNF814 Missense_Mutation p.Q540K 0.07 tolerated(0.08) benign(0) TCGA-F7-A61W-01 1 109607266 109607266 T C TAF13 Missense_Mutation p.D85G 0.40 deleterious(0.03) probably_damaging(0.942) TCGA-F7-A61W-01 1 162351632 162351632 A G C1orf226 Intron 0.29 TCGA-F7-A61W-01 1 179077872 179077872 T A ABL2 Missense_Mutation p.S844C 0.46 tolerated_low_confidence(0.07) benign(0.111) TCGA-F7-A61W-01 1 192312158 192312158 G C RGS21 5'UTR 0.31 TCGA-F7-A61W-01 1 26189386 26189386 A C PAQR7 Missense_Mutation p.F315L 0.34 tolerated(0.24) benign(0.269) TCGA-F7-A61W-01 1 36564394 36564394 C T COL8A2 Silent p.G296G 0.27 TCGA-F7-A61W-01 1 47398680 47398680 T C CYP4A11 Missense_Mutation p.N421S 0.04 deleterious(0.03) possibly_damaging(0.654) TCGA-F7-A61W-01 1 47611577 47611577 A G CYP4A22 Missense_Mutation p.N421S 0.38 deleterious(0.03) possibly_damaging(0.764) TCGA-F7-A61W-01 1 92604962 92604962 G T BTBD8 Missense_Mutation p.D270Y 0.32 deleterious(0) probably_damaging(1) TCGA-F7-A61W-01 1 94640173 94640173 G A ARHGAP29 Missense_Mutation p.T1013I 0.38 tolerated(0.06) benign(0.023) TCGA-F7-A61W-01 20 2463924 2463924 T C ZNF343 Silent p.K561K 0.35 TCGA-F7-A61W-01 20 6751021 6751021 A G BMP2 Missense_Mutation p.Y83C 0.26 deleterious(0) probably_damaging(0.996) TCGA-F7-A61W-01 21 31812774 31812774 G T KRTAP15-1 Silent p.L43L 0.51 TCGA-F7-A61W-01 21 38560808 38560808 G C TTC3 Missense_Mutation p.E1646Q 0.33 tolerated(0.11) possibly_damaging(0.836) TCGA-F7-A61W-01 21 46888461 46888461 C T COL18A1 Missense_Mutation p.L318F 0.37 unknown(0) TCGA-F7-A61W-01 22 19127410 19127410 T C DGCR14 Silent p.A176A 0.39 TCGA-F7-A61W-01 22 30688327 30688328 - A TBC1D10A 3'UTR 0.28 TCGA-F7-A61W-01 22 42605671 42605671 T C TCF20 Missense_Mutation p.I1881V 0.41 benign(0.06) TCGA-F7-A61W-01 2 108488115 108488115 G T RGPD4 Nonsense_Mutation p.E1219* 0.03 TCGA-F7-A61W-01 2 131519912 131519912 G A AMER3 Silent p.V89V 0.29 TCGA-F7-A61W-01 2 187359982 187359982 A G ZC3H15 Missense_Mutation p.N33S 0.36 deleterious(0) possibly_damaging(0.893) TCGA-F7-A61W-01 2 197641346 197641346 T C GTF3C3 Silent p.L466L 0.09 TCGA-F7-A61W-01 2 220354174 220354174 C A SPEG Missense_Mutation p.P2812T 0.47 benign(0.046) TCGA-F7-A61W-01 2 228012208 228012208 A T COL4A4 5'UTR 0.26 TCGA-F7-A61W-01 2 90212076 90212076 C A IGKV3D-11 Nonsense_Mutation p.Y56* 0.31 TCGA-F7-A61W-01 3 100413810 100413810 C G GPR128 Missense_Mutation p.L787V 0.33 tolerated(0.16) benign(0.002) TCGA-F7-A61W-01 3 128976661 128976661 C G COPG1 Missense_Mutation p.L277V 0.03 deleterious(0.01) benign(0.17) TCGA-F7-A61W-01 3 154022739 154022739 T A DHX36 Missense_Mutation p.I331F 0.47 deleterious(0.01) possibly_damaging(0.691) TCGA-F7-A61W-01 3 44856411 44856411 A G KIF15 Missense_Mutation p.S798G 0.70 tolerated(0.12) benign(0.248) TCGA-F7-A61W-01 3 47455799 47455799 A G SCAP Silent p.H1155H 0.72 TCGA-F7-A61W-01 4 100203665 100203665 C A ADH1A Silent p.A222A 0.41 TCGA-F7-A61W-01 4 176556040 176556040 G C GPM6A 3'UTR 0.30 TCGA-F7-A61W-01 4 47525029 47525029 G T ATP10D Missense_Mutation p.R162S 0.23 tolerated(0.1) benign(0.021) TCGA-F7-A61W-01 4 89314703 89314703 G A HERC6 Missense_Mutation p.C243Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-F7-A61W-01 5 139819838 139819838 A G ANKHD1 Missense_Mutation p.Y251C 0.64 unknown(0) TCGA-F7-A61W-01 5 50689350 50689350 C T ISL1 Missense_Mutation p.P319L 0.09 tolerated(0.1) benign(0.014) TCGA-F7-A61W-01 5 71482572 71482572 C T MAP1B Silent p.T167T 0.72 TCGA-F7-A61W-01 5 7892899 7892899 C G MTRR Missense_Mutation p.S504C 0.03 deleterious(0.02) probably_damaging(0.974) TCGA-F7-A61W-01 6 130762093 130762093 A C TMEM200A Missense_Mutation p.K176Q 0.35 deleterious(0.01) possibly_damaging(0.49) TCGA-F7-A61W-01 6 136476804 136476804 C T PDE7B Silent p.L207L 0.45 TCGA-F7-A61W-01 6 149395184 149395184 A G UST Missense_Mutation p.T385A 0.06 tolerated_low_confidence(0.12) possibly_damaging(0.899) TCGA-F7-A61W-01 6 165792844 165792844 G C PDE10A Missense_Mutation p.H608Q 0.37 deleterious(0.01) benign(0.308) TCGA-F7-A61W-01 7 137773485 137773485 C T AKR1D1 Missense_Mutation p.R78W 0.35 deleterious(0) possibly_damaging(0.541) TCGA-F7-A61W-01 7 137801398 137801398 A T AKR1D1 Missense_Mutation p.D324V 0.49 deleterious(0) possibly_damaging(0.752) TCGA-F7-A61W-01 8 113516155 113516155 G T CSMD3 Missense_Mutation p.D1649E 0.35 deleterious(0) possibly_damaging(0.901) TCGA-F7-A61W-01 8 68999986 68999986 T C PREX2 Silent p.D685D 0.32 TCGA-F7-A61W-01 9 32973634 32973634 T A APTX Silent p.V297V 0.66 TCGA-F7-A61W-01 9 38397306 38397306 C T ALDH1B1 3'UTR 0.67 TCGA-F7-A61W-01 X 101623506 101623506 G A NXF2B Missense_Mutation p.R224W 0.34 deleterious(0) possibly_damaging(0.883) TCGA-F7-A61W-01 X 2408368 2408368 C T ZBED1 Silent p.L131L 0.68 TCGA-F7-A61W-01 X 53600715 53600715 T A HUWE1 Nonsense_Mutation p.K2103* 0.36 TCGA-F7-A620-01 10 129903554 129903554 G C MKI67 Missense_Mutation p.P2184A 0.17 tolerated(0.06) probably_damaging(0.953) TCGA-F7-A620-01 10 51464838 51464838 T C AGAP7 Missense_Mutation p.K540E 0.08 deleterious(0) probably_damaging(0.943) TCGA-F7-A620-01 11 125875682 125875682 A G CDON Missense_Mutation p.I608T 0.13 deleterious(0) probably_damaging(0.978) TCGA-F7-A620-01 11 32635518 32635518 C T CCDC73 Silent p.E782E 0.15 TCGA-F7-A620-01 11 46406910 46406910 G A CHRM4 Nonsense_Mutation p.R400* 0.11 TCGA-F7-A620-01 11 56230199 56230199 G A OR5M9 Missense_Mutation p.R227C 0.12 tolerated(0.07) benign(0.009) TCGA-F7-A620-01 12 26276085 26276085 T C BHLHE41 Silent p.K121K 0.20 TCGA-F7-A620-01 12 70988277 70988277 G T PTPRB Missense_Mutation p.Q496K 0.21 tolerated(0.26) benign(0.018) TCGA-F7-A620-01 12 97339486 97339486 C T NEDD1 Missense_Mutation p.S564F 0.20 deleterious(0.01) probably_damaging(0.956) TCGA-F7-A620-01 13 73349380 73349382 TCT - DIS3 In_Frame_Del p.E318del 0.24 TCGA-F7-A620-01 14 20836706 20836706 G A TEP1 Nonsense_Mutation p.R2592* 0.14 TCGA-F7-A620-01 14 64467347 64467347 A T SYNE2 Missense_Mutation p.H1183L 0.18 benign(0) TCGA-F7-A620-01 15 40915815 40915816 TG - CASC5 Frame_Shift_Del p.Y1145Ffs*6 0.13 TCGA-F7-A620-01 15 53049960 53049960 C T ONECUT1 Missense_Mutation p.R397H 0.11 deleterious(0) probably_damaging(0.995) TCGA-F7-A620-01 15 63904614 63904614 C T HERC1 Missense_Mutation p.E4746K 0.14 probably_damaging(0.998) TCGA-F7-A620-01 16 1388958 1388958 G T BAIAP3 Missense_Mutation p.G98W 0.11 deleterious(0.01) probably_damaging(0.966) TCGA-F7-A620-01 16 51175382 51175382 G A SALL1 Missense_Mutation p.R251C 0.10 tolerated(0.06) probably_damaging(0.912) TCGA-F7-A620-01 17 39279791 39279791 C T KRTAP4-12 Missense_Mutation p.C195Y 0.21 deleterious(0) unknown(0) TCGA-F7-A620-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.32 deleterious(0.01) possibly_damaging(0.876) TCGA-F7-A620-01 17 79205936 79205936 G A ENTHD2 Intron 0.75 TCGA-F7-A620-01 18 31319576 31319576 C G ASXL3 Silent p.L736L 0.05 TCGA-F7-A620-01 19 17918691 17918691 C T B3GNT3 Silent p.F25F 0.14 TCGA-F7-A620-01 19 18856686 18856686 G T CRTC1 Silent p.G115G 0.06 TCGA-F7-A620-01 19 43268418 43268418 A T PSG8 Missense_Mutation p.F27Y 0.17 deleterious(0) possibly_damaging(0.613) TCGA-F7-A620-01 1 111862863 111862863 G A CHIA Silent p.E402E 0.20 TCGA-F7-A620-01 1 155630074 155630074 T A YY1AP1 Nonsense_Mutation p.K681* 0.06 TCGA-F7-A620-01 1 18809727 18809727 G A KLHDC7A Missense_Mutation p.R751Q 0.16 tolerated(1) benign(0.001) TCGA-F7-A620-01 1 220986672 220986672 G C MARC1 Missense_Mutation p.G309A 0.16 tolerated(0.06) possibly_damaging(0.542) TCGA-F7-A620-01 1 240497499 240497499 G T FMN2 Missense_Mutation p.D1579Y 0.17 probably_damaging(0.997) TCGA-F7-A620-01 1 48937682 48937682 C A SPATA6 5'UTR 0.18 TCGA-F7-A620-01 1 7724554 7724554 G A CAMTA1 Silent p.T649T 0.16 TCGA-F7-A620-01 1 8399557 8399557 C T SLC45A1 Silent p.I593I 0.11 TCGA-F7-A620-01 20 13260439 13260439 G A ISM1 Silent p.K179K 0.20 TCGA-F7-A620-01 20 23858182 23858182 A - CST5 Frame_Shift_Del p.L102Wfs*12 0.13 TCGA-F7-A620-01 20 24950953 24950953 G A APMAP Missense_Mutation p.S198F 0.14 tolerated(0.11) benign(0.017) TCGA-F7-A620-01 20 55027486 55027486 C T CASS4 Silent p.T418T 0.07 TCGA-F7-A620-01 21 32007656 32007656 G C KRTAP20-2 Missense_Mutation p.G25A 0.07 unknown(0) TCGA-F7-A620-01 22 36689510 36689512 CTC - MYH9 In_Frame_Del p.E1320del 0.15 TCGA-F7-A620-01 22 37891880 37891880 C T CARD10 Silent p.E730E 0.07 TCGA-F7-A620-01 22 44527492 44527492 C T PARVB Missense_Mutation p.R201W 0.14 deleterious(0) possibly_damaging(0.827) TCGA-F7-A620-01 22 50921173 50921173 G A ADM2 Silent p.S96S 0.32 TCGA-F7-A620-01 2 1491667 1491667 G A TPO Missense_Mutation p.E558K 0.17 deleterious(0.03) possibly_damaging(0.73) TCGA-F7-A620-01 2 152420376 152420376 G T NEB Silent p.P6180P 0.07 TCGA-F7-A620-01 2 166848095 166848095 T C SCN1A Missense_Mutation p.N1897S 0.15 deleterious(0) probably_damaging(0.998) TCGA-F7-A620-01 2 206882489 206882489 T C INO80D Missense_Mutation p.K486R 0.21 tolerated(0.37) benign(0.007) TCGA-F7-A620-01 2 230632383 230632383 C G TRIP12 Missense_Mutation p.V1956L 0.24 deleterious(0) probably_damaging(0.992) TCGA-F7-A620-01 3 113655241 113655241 C G GRAMD1C Missense_Mutation p.Q529E 0.13 tolerated(0.13) benign(0.09) TCGA-F7-A620-01 3 122423459 122423459 G A PARP14 Missense_Mutation p.G1135E 0.20 deleterious(0) probably_damaging(0.99) TCGA-F7-A620-01 3 158363534 158363534 C T GFM1 Silent p.V66V 0.07 TCGA-F7-A620-01 3 164725727 164725727 G A SI Silent p.D1413D 0.23 TCGA-F7-A620-01 3 49948253 49948253 C T MON1A Silent p.R323R 0.07 TCGA-F7-A620-01 3 57131801 57131801 G T IL17RD Missense_Mutation p.Q644K 0.09 tolerated_low_confidence(0.19) benign(0.018) TCGA-F7-A620-01 3 65365202 65365202 G A MAGI1 Missense_Mutation p.S910L 0.20 deleterious(0.03) probably_damaging(0.947) TCGA-F7-A620-01 3 9027468 9027468 G T SRGAP3 Missense_Mutation p.P1012H 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F7-A620-01 4 100534246 100534246 C T MTTP Silent p.G722G 0.23 TCGA-F7-A620-01 4 70079796 70079796 G A UGT2B11 Silent p.I215I 0.11 TCGA-F7-A620-01 4 94376882 94376882 C A GRID2 Missense_Mutation p.R539S 0.06 deleterious(0.01) probably_damaging(1) TCGA-F7-A620-01 4 94376929 94376929 G T GRID2 Missense_Mutation p.K554N 0.06 deleterious(0.03) benign(0.266) TCGA-F7-A620-01 5 133541582 133541582 T G PPP2CA Intron 0.17 TCGA-F7-A620-01 5 137593486 137593486 C T GFRA3 Silent p.E209E 0.17 TCGA-F7-A620-01 5 140230586 140230586 C G PCDHA9 Intron 0.12 TCGA-F7-A620-01 5 149502614 149502614 G A PDGFRB Missense_Mutation p.P725L 0.05 tolerated(0.22) benign(0.005) TCGA-F7-A620-01 6 105607694 105607694 C A POPDC3 Missense_Mutation p.R162S 0.08 deleterious(0) possibly_damaging(0.705) TCGA-F7-A620-01 6 26247100 26247100 G T HIST1H4G Silent p.R36R 0.12 TCGA-F7-A620-01 6 26377080 26377080 C G BTN3A2 3'UTR 0.22 TCGA-F7-A620-01 6 27114533 27114533 C A HIST1H2BK Silent p.S15S 0.15 TCGA-F7-A620-01 6 31324917 31324917 G A HLA-B Nonsense_Mutation p.R7* 0.16 TCGA-F7-A620-01 6 35053632 35053632 G A ANKS1A Silent p.T1074T 0.25 TCGA-F7-A620-01 6 35213155 35213155 T C SCUBE3 Missense_Mutation p.L851P 0.10 deleterious(0) probably_damaging(1) TCGA-F7-A620-01 6 35454450 35454456 GCTCTGG - TEAD3 5'UTR 0.11 TCGA-F7-A620-01 6 56473842 56473842 T C DST Intron 0.18 TCGA-F7-A620-01 7 72643605 72643605 C T NCF1B RNA 0.36 TCGA-F7-A620-01 7 92027950 92027950 C T ANKIB1 Missense_Mutation p.A986V 0.16 deleterious_low_confidence(0.01) benign(0.005) TCGA-F7-A620-01 8 121015325 121015325 C T DEPTOR Silent p.P300P 0.05 TCGA-F7-A620-01 8 17133958 17133958 C G VPS37A Missense_Mutation p.P232R 0.11 deleterious(0) probably_damaging(0.917) TCGA-F7-A620-01 9 128246829 128246829 G A MAPKAP1 Missense_Mutation p.S367L 0.20 tolerated(0.28) benign(0.022) TCGA-F7-A620-01 9 130605480 130605480 C T ENG Missense_Mutation p.E38K 0.15 tolerated(0.34) benign(0.004) TCGA-F7-A620-01 9 137998599 137998599 C T OLFM1 Silent p.C209C 0.21 TCGA-F7-A620-01 9 15784679 15784679 G C CCDC171 Missense_Mutation p.G1085A 0.20 tolerated(0.55) benign(0.199) TCGA-F7-A620-01 9 2058446 2058446 G A SMARCA2 Silent p.E501E 0.11 TCGA-F7-A620-01 X 136649867 136649867 T C ZIC3 Silent p.F339F 0.04 TCGA-F7-A620-01 X 151283859 151283859 C A RP11-1007I13.4 RNA 0.26 TCGA-F7-A620-01 X 48457207 48457207 A C WDR13 Silent p.P48P 0.24 TCGA-F7-A622-01 10 32760080 32760080 T C CCDC7 Missense_Mutation p.V200A 0.31 tolerated(0.17) benign(0.002) TCGA-F7-A622-01 11 117391933 117391933 C T DSCAML1 Silent p.S435S 0.23 TCGA-F7-A622-01 11 118851366 118851366 C T FOXR1 Missense_Mutation p.R260C 0.26 tolerated(0.07) probably_damaging(1) TCGA-F7-A622-01 11 13721993 13721993 A G FAR1 Missense_Mutation p.I107V 0.28 tolerated(0.45) benign(0.021) TCGA-F7-A622-01 11 22647101 22647101 G A FANCF Missense_Mutation p.L86F 0.33 deleterious(0) probably_damaging(0.999) TCGA-F7-A622-01 11 418799 418799 C T ANO9 Missense_Mutation p.R684H 0.26 deleterious(0.01) probably_damaging(0.97) TCGA-F7-A622-01 11 61070124 61070124 C A DDB1 Missense_Mutation p.M1014I 0.56 deleterious(0.02) benign(0.239) TCGA-F7-A622-01 11 64053963 64053963 G T GPR137 Intron 0.06 TCGA-F7-A622-01 11 66483306 66483306 T - SPTBN2 Frame_Shift_Del p.I102Yfs*47 0.18 TCGA-F7-A622-01 11 67132465 67132465 C T CLCF1 3'UTR 0.23 TCGA-F7-A622-01 11 92533084 92533084 T C FAT3 Missense_Mutation p.I2302T 0.41 possibly_damaging(0.679) TCGA-F7-A622-01 12 117962852 117962852 C T KSR2 Missense_Mutation p.G675D 0.33 deleterious(0) probably_damaging(1) TCGA-F7-A622-01 12 132446488 132446488 A G EP400 Missense_Mutation p.I442V 0.34 unknown(0) TCGA-F7-A622-01 12 14827630 14827630 A G GUCY2C Missense_Mutation p.I338T 0.36 tolerated(0.52) benign(0.002) TCGA-F7-A622-01 12 49445506 49445521 ATAGGCGCGATACCTC - KMT2D Frame_Shift_Del p.E649Pfs*276 0.14 TCGA-F7-A622-01 12 6436582 6436583 - GCC PLEKHG6 In_Frame_Ins p.A612dup 0.38 TCGA-F7-A622-01 12 85518261 85518261 T G LRRIQ1 Missense_Mutation p.L1324R 0.03 tolerated(0.7) possibly_damaging(0.59) TCGA-F7-A622-01 12 97078470 97078470 T C C12orf55 Silent p.L1921L 0.44 TCGA-F7-A622-01 13 32812053 32812053 G T FRY Silent p.L2116L 0.33 TCGA-F7-A622-01 14 20296135 20296135 C A OR4N2 Missense_Mutation p.N176K 0.23 deleterious(0) probably_damaging(0.936) TCGA-F7-A622-01 14 20768956 20768956 T A TTC5 Missense_Mutation p.Q69L 0.29 tolerated(0.22) benign(0.007) TCGA-F7-A622-01 14 21837411 21837411 G A SUPT16H Missense_Mutation p.P245L 0.31 deleterious(0) probably_damaging(0.987) TCGA-F7-A622-01 14 91701363 91701363 A G GPR68 Missense_Mutation p.M11T 0.29 tolerated(0.49) benign(0.001) TCGA-F7-A622-01 14 92583984 92583984 T C NDUFB1 Missense_Mutation p.I47V 0.36 tolerated(0.72) benign(0.068) TCGA-F7-A622-01 14 93760714 93760714 C T BTBD7 Missense_Mutation p.D218N 0.33 tolerated(0.17) possibly_damaging(0.565) TCGA-F7-A622-01 15 69348934 69348934 G C NOX5 Missense_Mutation p.K732N 0.42 deleterious(0) probably_damaging(0.987) TCGA-F7-A622-01 15 79307681 79307681 G A RASGRF1 Missense_Mutation p.P605L 0.74 deleterious(0.02) possibly_damaging(0.837) TCGA-F7-A622-01 15 93499774 93499774 C T CHD2 Missense_Mutation p.T632I 0.05 deleterious(0.04) possibly_damaging(0.479) TCGA-F7-A622-01 15 94841761 94841761 C T MCTP2 Silent p.P89P 0.80 TCGA-F7-A622-01 16 15758653 15758653 G C NDE1 Missense_Mutation p.K6N 0.15 tolerated(0.2) benign(0.006) TCGA-F7-A622-01 16 21156602 21156602 C A DNAH3 Missense_Mutation p.L116F 0.10 tolerated_low_confidence(0.17) benign(0.211) TCGA-F7-A622-01 16 67039294 67039294 G A CES4A Missense_Mutation p.R438Q 0.32 deleterious(0.02) possibly_damaging(0.864) TCGA-F7-A622-01 17 48267696 48267696 C A COL1A1 Missense_Mutation p.G815C 0.35 unknown(0) TCGA-F7-A622-01 17 67031890 67031890 T C ABCA9 Missense_Mutation p.M285V 0.34 deleterious(0.04) benign(0.05) TCGA-F7-A622-01 17 76476820 76476820 G A DNAH17 Silent p.Y2552Y 0.22 TCGA-F7-A622-01 18 47809071 47809071 A - CXXC1 Frame_Shift_Del p.N625Kfs*6 0.27 TCGA-F7-A622-01 19 11446172 11446172 G A RAB3D Silent p.D141D 0.38 TCGA-F7-A622-01 19 16630926 16630926 A C C19orf44 3'UTR 0.27 TCGA-F7-A622-01 19 4793061 4793061 G A FEM1A Missense_Mutation p.V399M 0.24 deleterious(0) probably_damaging(0.975) TCGA-F7-A622-01 19 53344032 53344032 A T ZNF468 Missense_Mutation p.S505R 0.31 tolerated(0.26) probably_damaging(0.945) TCGA-F7-A622-01 19 54313428 54313428 G C NLRP12 Silent p.L495L 0.04 TCGA-F7-A622-01 19 56733993 56733993 T A ZSCAN5A Missense_Mutation p.T236S 0.24 tolerated(0.59) benign(0.043) TCGA-F7-A622-01 1 182638829 182638829 C T RGS8 Intron 0.25 TCGA-F7-A622-01 1 186114938 186114938 G A HMCN1 Missense_Mutation p.G4831R 0.29 probably_damaging(0.999) TCGA-F7-A622-01 1 186646921 186646922 - T PTGS2 Frame_Shift_Ins p.L167Ifs*10 0.09 TCGA-F7-A622-01 1 201195148 201195148 C T IGFN1 Silent p.I3561I 0.34 TCGA-F7-A622-01 1 235969554 235969554 G C LYST Missense_Mutation p.A961G 0.24 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-F7-A622-01 1 41107556 41107556 G A RIMS3 Silent p.S14S 0.24 TCGA-F7-A622-01 2 128466386 128466386 G A WDR33 Missense_Mutation p.R1216C 0.19 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-F7-A622-01 2 176948135 176948135 C T EVX2 Missense_Mutation p.A124T 0.26 tolerated(0.13) benign(0.018) TCGA-F7-A622-01 2 185803879 185803879 G C ZNF804A 3'UTR 0.45 TCGA-F7-A622-01 2 197878278 197878279 AA - HNRNPA3P15 5'Flank 0.20 TCGA-F7-A622-01 2 220073479 220073479 A G ZFAND2B Intron 0.42 TCGA-F7-A622-01 2 3691474 3691474 G T COLEC11 Silent p.A208A 0.30 TCGA-F7-A622-01 2 48026064 48026064 C G MSH6 Missense_Mutation p.S314R 0.27 tolerated(0.35) benign(0.1) TCGA-F7-A622-01 2 90193331 90193331 C A IGKV1D-13 Silent p.G86G 0.38 TCGA-F7-A622-01 3 119887190 119887190 G A GPR156 Silent p.N378N 0.28 TCGA-F7-A622-01 3 129251468 129251468 C T RHO Silent p.I263I 0.44 TCGA-F7-A622-01 3 165548003 165548003 G A BCHE Silent p.N273N 0.55 TCGA-F7-A622-01 3 183777668 183777668 C T HTR3C Silent p.T326T 0.18 TCGA-F7-A622-01 3 186289886 186289886 G A DNAJB11 Missense_Mutation p.R24Q 0.05 tolerated(0.12) benign(0.017) TCGA-F7-A622-01 3 30732969 30732969 C T TGFBR2 Missense_Mutation p.R553C 0.42 deleterious(0) probably_damaging(1) TCGA-F7-A622-01 4 153249517 153249526 TATGTCCCAC - FBXW7 Frame_Shift_Del p.V418Qfs*9 0.69 TCGA-F7-A622-01 4 187630162 187630163 - A FAT1 Frame_Shift_Ins p.A274Cfs*7 0.40 TCGA-F7-A622-01 4 2632856 2632856 G C FAM193A Missense_Mutation p.C42S 0.14 deleterious(0) probably_damaging(0.974) TCGA-F7-A622-01 4 57777618 57777618 C A REST Missense_Mutation p.P272T 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-F7-A622-01 4 78641571 78641571 G A CNOT6L 3'UTR 0.22 TCGA-F7-A622-01 4 81504291 81504291 C T C4orf22 Missense_Mutation p.T96M 0.23 deleterious(0.03) benign(0.01) TCGA-F7-A622-01 4 99997692 99997692 G A ADH5 Silent p.G192G 0.44 TCGA-F7-A622-01 5 140558090 140558090 G T PCDHB8 Nonsense_Mutation p.E159* 0.05 TCGA-F7-A622-01 5 149506164 149506164 C T PDGFRB Silent p.K531K 0.58 TCGA-F7-A622-01 6 146273490 146273490 A G SHPRH Missense_Mutation p.I253T 0.43 tolerated(0.08) benign(0.279) TCGA-F7-A622-01 6 44337830 44337830 G A SPATS1 Silent p.E246E 0.23 TCGA-F7-A622-01 8 105360772 105360772 G A DCSTAMP 5'UTR 0.29 TCGA-F7-A622-01 8 145756232 145756232 G A ARHGAP39 Missense_Mutation p.R1002W 0.13 deleterious(0) probably_damaging(1) TCGA-F7-A622-01 8 67361106 67361106 C G ADHFE1 Missense_Mutation p.T212S 0.21 tolerated(0.18) benign(0.003) TCGA-F7-A622-01 8 89128881 89128881 G T MMP16 Missense_Mutation p.P313H 0.14 tolerated(0.05) possibly_damaging(0.868) TCGA-F7-A622-01 9 124535130 124535130 C T DAB2IP Nonsense_Mutation p.Q747* 0.53 TCGA-F7-A622-01 9 139413085 139413085 G A NOTCH1 Missense_Mutation p.R353C 0.22 deleterious(0) probably_damaging(1) TCGA-F7-A622-01 9 4697876 4697876 C T CDC37L1 Silent p.A248A 0.61 TCGA-F7-A622-01 X 49032432 49032432 G T PRICKLE3 Missense_Mutation p.L480M 0.42 tolerated_low_confidence(0.09) possibly_damaging(0.794) TCGA-F7-A623-01 10 101802265 101802265 C T CPN1 Silent p.R432R 0.11 TCGA-F7-A623-01 10 105362870 105362870 G T SH3PXD2A Missense_Mutation p.S674Y 0.16 deleterious_low_confidence(0.01) benign(0.4) TCGA-F7-A623-01 10 115978258 115978258 C T TDRD1 Silent p.I803I 0.16 TCGA-F7-A623-01 10 135350631 135350631 G A CYP2E1 Silent p.R344R 0.10 TCGA-F7-A623-01 10 18957556 18957556 G A ARL5B Missense_Mutation p.G69S 0.10 deleterious(0) probably_damaging(0.984) TCGA-F7-A623-01 10 27539487 27539487 C T RP11-85G18.6 RNA 0.11 TCGA-F7-A623-01 10 33200431 33200431 G A ITGB1 Nonsense_Mutation p.Q626* 0.16 TCGA-F7-A623-01 10 43127444 43127444 G C ZNF33B Missense_Mutation p.I61M 0.15 deleterious(0) probably_damaging(0.993) TCGA-F7-A623-01 10 70770669 70770673 AGGAG - KIAA1279 Frame_Shift_Del p.G297Sfs*39 0.22 TCGA-F7-A623-01 10 93288 93288 G A TUBB8 Silent p.N348N 0.10 TCGA-F7-A623-01 10 95066537 95066537 A C MYOF 3'UTR 0.17 TCGA-F7-A623-01 10 95718758 95718759 - T PIPSL RNA 0.15 TCGA-F7-A623-01 10 98742636 98742638 AAA - C10orf12 In_Frame_Del p.K498del 0.12 TCGA-F7-A623-01 11 10064486 10064486 G A SBF2 Nonsense_Mutation p.Q62* 0.25 TCGA-F7-A623-01 11 101347265 101347265 C T TRPC6 Missense_Mutation p.G504D 0.16 deleterious(0) probably_damaging(1) TCGA-F7-A623-01 11 103797699 103797699 T C PDGFD Missense_Mutation p.T310A 0.42 tolerated(0.1) benign(0.007) TCGA-F7-A623-01 11 108163425 108163425 G A ATM Missense_Mutation p.V1506M 0.11 tolerated(0.08) possibly_damaging(0.488) TCGA-F7-A623-01 11 17111178 17111178 A G PIK3C2A 3'UTR 0.19 TCGA-F7-A623-01 11 59857236 59857236 C G MS4A2 Nonsense_Mutation p.S43* 0.10 TCGA-F7-A623-01 11 63594565 63594565 C T C11orf84 Missense_Mutation p.S367F 0.09 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-F7-A623-01 11 64111800 64111800 C A CCDC88B Missense_Mutation p.S596Y 0.18 deleterious_low_confidence(0.02) benign(0.052) TCGA-F7-A623-01 11 64112192 64112192 C T CCDC88B Nonsense_Mutation p.Q727* 0.20 TCGA-F7-A623-01 11 71705773 71705773 C T RNF121 Silent p.S212S 0.48 TCGA-F7-A623-01 11 793596 793596 C T SLC25A22 Missense_Mutation p.V76I 0.10 tolerated(0.51) probably_damaging(0.999) TCGA-F7-A623-01 12 27863859 27863859 C G MRPS35 Missense_Mutation p.S28W 0.07 tolerated_low_confidence(0.08) benign(0.24) TCGA-F7-A623-01 12 30833559 30833559 C T IPO8 Missense_Mutation p.E166K 0.32 tolerated(0.05) benign(0.059) TCGA-F7-A623-01 12 32138778 32138778 C G KIAA1551 Nonsense_Mutation p.S1630* 0.23 TCGA-F7-A623-01 12 45269595 45269595 C T NELL2 Intron 0.12 TCGA-F7-A623-01 12 56748400 56748400 T C STAT2 Splice_Site p.X212_splice 0.10 TCGA-F7-A623-01 12 78591042 78591042 C T NAV3 Silent p.L2081L 0.10 TCGA-F7-A623-01 13 101735483 101735483 G A NALCN Missense_Mutation p.A1217V 0.08 tolerated(0.08) possibly_damaging(0.566) TCGA-F7-A623-01 13 42877787 42877787 C T AKAP11 Silent p.L1635L 0.16 TCGA-F7-A623-01 13 48835452 48835452 T G ITM2B 3'UTR 0.40 TCGA-F7-A623-01 14 103390078 103390078 T G AMN Missense_Mutation p.V25G 0.38 deleterious(0) probably_damaging(0.948) TCGA-F7-A623-01 14 20404571 20404571 T G OR4K1 Missense_Mutation p.L249R 0.11 deleterious(0) probably_damaging(0.995) TCGA-F7-A623-01 14 20848553 20848553 G C TEP1 Nonsense_Mutation p.S1615* 0.21 TCGA-F7-A623-01 14 47120956 47120956 C - RPL10L 5'UTR 0.13 TCGA-F7-A623-01 14 60076839 60076839 C G RTN1 Intron 0.24 TCGA-F7-A623-01 14 64990072 64990072 G C ZBTB1 Missense_Mutation p.R617T 0.14 deleterious(0.03) probably_damaging(0.977) TCGA-F7-A623-01 14 71202729 71202729 T A MAP3K9 Missense_Mutation p.E621V 0.41 tolerated(0.21) benign(0.001) TCGA-F7-A623-01 14 74951163 74951163 G A NPC2 Silent p.T106T 0.25 TCGA-F7-A623-01 14 94395626 94395626 G A FAM181A 3'UTR 0.42 TCGA-F7-A623-01 14 95107759 95107759 C T SERPINA13P RNA 0.33 TCGA-F7-A623-01 15 23811187 23811187 G T MKRN3 Silent p.P86P 0.17 TCGA-F7-A623-01 15 49097766 49097766 C G CEP152 Missense_Mutation p.E27D 0.21 deleterious(0) probably_damaging(0.998) TCGA-F7-A623-01 15 60849056 60849056 C T RORA Missense_Mutation p.M97I 0.11 tolerated(0.55) benign(0) TCGA-F7-A623-01 15 77472681 77472681 G A PEAK1 Nonsense_Mutation p.R530* 0.13 TCGA-F7-A623-01 16 12223508 12223508 C T SNX29 Silent p.D496D 0.33 TCGA-F7-A623-01 16 1453317 1453317 C T UNKL Missense_Mutation p.D106N 0.11 deleterious(0) probably_damaging(0.996) TCGA-F7-A623-01 16 15728665 15728665 C T KIAA0430 Missense_Mutation p.E319K 0.12 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-F7-A623-01 16 15844038 15844038 G A MYH11 Missense_Mutation p.T679M 0.10 possibly_damaging(0.677) TCGA-F7-A623-01 16 16418895 16418895 C A PKD1P1 RNA 0.08 TCGA-F7-A623-01 16 21994568 21994568 C G UQCRC2 3'UTR 0.14 TCGA-F7-A623-01 16 27720176 27720176 G A KIAA0556 Missense_Mutation p.D514N 0.08 deleterious(0.01) possibly_damaging(0.735) TCGA-F7-A623-01 16 2871026 2871026 C G PRSS21 Silent p.L207L 0.11 TCGA-F7-A623-01 16 30440485 30440485 G T DCTPP1 Silent p.R35R 0.20 TCGA-F7-A623-01 16 30456191 30456191 C T SEPHS2 Silent p.L286L 0.07 TCGA-F7-A623-01 16 4908075 4908075 T C UBN1 Missense_Mutation p.Y112H 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-F7-A623-01 16 67219366 67219385 GTCCAGCTGCAGGACAGACA TT EXOC3L1 In_Frame_Del p.V502_D508delinsE 0.12 TCGA-F7-A623-01 16 68014180 68014180 C T DPEP3 Missense_Mutation p.R60H 0.20 tolerated_low_confidence(0.55) benign(0.003) TCGA-F7-A623-01 16 70841729 70841729 G A HYDIN Silent p.I5040I 0.23 TCGA-F7-A623-01 16 70841732 70841732 G T HYDIN Silent p.I5039I 0.24 TCGA-F7-A623-01 17 21217686 21217686 G T MAP2K3 3'UTR 0.19 TCGA-F7-A623-01 17 38420826 38420826 G A WIPF2 Missense_Mutation p.R133H 0.42 tolerated(0.21) possibly_damaging(0.891) TCGA-F7-A623-01 17 38636060 38636060 C T TNS4 Silent p.V592V 0.11 TCGA-F7-A623-01 17 3937554 3937554 G A ZZEF1 Silent p.H2113H 0.19 TCGA-F7-A623-01 17 40958810 40958810 G A CNTD1 Silent p.E233E 0.54 TCGA-F7-A623-01 17 57651285 57651285 T C DHX40 Missense_Mutation p.L244S 0.17 tolerated(0.32) benign(0.182) TCGA-F7-A623-01 17 7579419 7579420 - GG TP53 Frame_Shift_Ins p.S90Pfs*34 0.39 TCGA-F7-A623-01 17 79203022 79203022 G A ENTHD2 Silent p.P428P 0.17 TCGA-F7-A623-01 17 80391643 80391643 A T HEXDC Missense_Mutation p.D131V 0.39 deleterious(0.01) benign(0.443) TCGA-F7-A623-01 17 80477919 80477919 G A FOXK2 Missense_Mutation p.R52H 0.40 tolerated(0.26) benign(0.014) TCGA-F7-A623-01 17 80477932 80477932 C A FOXK2 Silent p.I56I 0.06 TCGA-F7-A623-01 18 13055883 13055883 T C CEP192 Silent p.N1098N 0.12 TCGA-F7-A623-01 18 14542642 14542642 C T POTEC Silent p.K168K 0.09 TCGA-F7-A623-01 18 22804911 22804911 G A ZNF521 Missense_Mutation p.R991W 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A623-01 18 72345759 72345759 T C ZNF407 Silent p.L928L 0.40 TCGA-F7-A623-01 19 10781785 10781785 G A ILF3 Missense_Mutation p.D47N 0.10 deleterious(0) probably_damaging(0.999) TCGA-F7-A623-01 19 19136234 19136234 C T SUGP2 Missense_Mutation p.R308Q 0.11 deleterious(0.05) benign(0.085) TCGA-F7-A623-01 19 21477199 21477199 T G ZNF708 Missense_Mutation p.H190P 0.11 deleterious(0) probably_damaging(0.942) TCGA-F7-A623-01 19 22271902 22271902 G A ZNF257 Silent p.K450K 0.11 TCGA-F7-A623-01 19 31767794 31767794 A T TSHZ3 Missense_Mutation p.L969M 0.16 tolerated(0.62) probably_damaging(0.988) TCGA-F7-A623-01 19 34710734 34710735 - T LSM14A Frame_Shift_Ins p.D364* 0.16 TCGA-F7-A623-01 19 36939892 36939892 T G ZNF566 Missense_Mutation p.N416T 0.08 deleterious(0.02) benign(0.145) TCGA-F7-A623-01 19 37100749 37100749 A C ZNF382 Intron 0.68 TCGA-F7-A623-01 19 42582794 42582794 T C ZNF574 Silent p.I12I 0.11 TCGA-F7-A623-01 19 47231984 47231984 G A STRN4 Silent p.D310D 0.15 TCGA-F7-A623-01 19 48965285 48965285 C G KCNJ14 Missense_Mutation p.L102V 0.14 deleterious(0.05) probably_damaging(0.996) TCGA-F7-A623-01 19 49496528 49496528 A T GYS1 5'UTR 0.40 TCGA-F7-A623-01 19 49713661 49713661 C G TRPM4 Missense_Mutation p.F1109L 0.11 tolerated(0.44) benign(0.029) TCGA-F7-A623-01 19 52619126 52619126 G A ZNF616 Missense_Mutation p.H431Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-F7-A623-01 19 53217272 53217272 A C ZNF611 Silent p.A62A 0.10 TCGA-F7-A623-01 19 53473533 53473533 A G ZNF702P RNA 0.23 TCGA-F7-A623-01 19 53854889 53854889 C T ZNF845 Missense_Mutation p.H321Y 0.05 deleterious(0) probably_damaging(0.981) TCGA-F7-A623-01 19 54223413 54223413 T C MIR520D RNA 0.15 TCGA-F7-A623-01 19 54823409 54823409 G A LILRA5 Missense_Mutation p.S45F 0.08 deleterious(0.02) benign(0.01) TCGA-F7-A623-01 19 55594831 55594831 C T EPS8L1 Missense_Mutation p.R434C 0.44 deleterious(0.03) probably_damaging(0.964) TCGA-F7-A623-01 19 57765984 57765984 T C ZNF805 Silent p.T599T 0.18 TCGA-F7-A623-01 19 58265261 58265261 C T ZNF776 Nonsense_Mutation p.Q255* 0.08 TCGA-F7-A623-01 19 9362147 9362147 C A OR7E24 Missense_Mutation p.A143D 0.23 deleterious(0) probably_damaging(0.972) TCGA-F7-A623-01 1 103548389 103548389 G T COL11A1 Silent p.L82L 0.17 TCGA-F7-A623-01 1 111854313 111854313 C G CHIA Missense_Mutation p.L10V 0.17 tolerated(0.11) benign(0.364) TCGA-F7-A623-01 1 12785421 12785421 C T AADACL3 Silent p.L171L 0.09 TCGA-F7-A623-01 1 150298253 150298253 G T PRPF3 Missense_Mutation p.D64Y 0.14 deleterious(0) probably_damaging(0.968) TCGA-F7-A623-01 1 150933188 150933188 G T SETDB1 Missense_Mutation p.D884Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-F7-A623-01 1 152283696 152283696 C T FLG Silent p.K1222K 0.41 TCGA-F7-A623-01 1 153932693 153932693 T C SLC39A1 Missense_Mutation p.I286V 0.13 tolerated(0.21) benign(0.272) TCGA-F7-A623-01 1 155227144 155227144 G C SCAMP3 Missense_Mutation p.F237L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A623-01 1 155238539 155238539 G A CLK2 Silent p.G148G 0.13 TCGA-F7-A623-01 1 158548963 158548963 T A OR10X1 Missense_Mutation p.R243W 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-F7-A623-01 1 158592867 158592867 C T SPTA1 Missense_Mutation p.R2009H 0.13 deleterious(0.01) probably_damaging(0.953) TCGA-F7-A623-01 1 166831671 166831671 T A TADA1 Intron 0.18 TCGA-F7-A623-01 1 16953677 16953677 T G CROCCP2 3'Flank 0.12 TCGA-F7-A623-01 1 17942532 17942532 C T ARHGEF10L Intron 0.15 TCGA-F7-A623-01 1 186332067 186332067 C G TPR Missense_Mutation p.E200Q 0.10 benign(0.403) TCGA-F7-A623-01 1 201036040 201036040 C T CACNA1S Missense_Mutation p.V878M 0.14 deleterious(0) probably_damaging(0.986) TCGA-F7-A623-01 1 201052428 201052428 G A CACNA1S Missense_Mutation p.R419C 0.15 deleterious(0) probably_damaging(0.973) TCGA-F7-A623-01 1 202911163 202911163 A C ADIPOR1 Missense_Mutation p.F330C 0.27 tolerated(0.39) benign(0.019) TCGA-F7-A623-01 1 210015643 210015643 G A DIEXF Missense_Mutation p.D507N 0.40 tolerated(0.08) benign(0.155) TCGA-F7-A623-01 1 216595553 216595553 G A USH2A Silent p.N42N 0.13 TCGA-F7-A623-01 1 229568747 229568747 C T ACTA1 Missense_Mutation p.R39H 0.08 tolerated_low_confidence(0.06) probably_damaging(0.96) TCGA-F7-A623-01 1 233086426 233086426 C G NTPCR 5'UTR 0.21 TCGA-F7-A623-01 1 240341333 240341333 C T FMN2 Missense_Mutation p.P632L 0.14 unknown(0) TCGA-F7-A623-01 1 26524863 26524863 C T CATSPER4 Silent p.F255F 0.16 TCGA-F7-A623-01 1 46751399 46751399 G A LRRC41 Missense_Mutation p.A377V 0.13 tolerated(0.36) possibly_damaging(0.682) TCGA-F7-A623-01 1 55279605 55279605 A C C1orf177 Missense_Mutation p.E294A 0.07 deleterious(0) probably_damaging(0.999) TCGA-F7-A623-01 1 92595302 92595302 G A BTBD8 Missense_Mutation p.E241K 0.07 deleterious(0) probably_damaging(1) TCGA-F7-A623-01 20 1286379 1286379 G A SNPH Missense_Mutation p.G389D 0.10 tolerated(0.62) benign(0.109) TCGA-F7-A623-01 20 32379113 32379113 C A ZNF341 Silent p.P778P 0.29 TCGA-F7-A623-01 20 35533769 35533769 T C SAMHD1 Missense_Mutation p.R470G 0.10 tolerated(0.17) benign(0.001) TCGA-F7-A623-01 20 37612351 37612351 G A DHX35 Missense_Mutation p.E93K 0.14 tolerated(0.05) probably_damaging(0.999) TCGA-F7-A623-01 20 39978973 39978973 G C LPIN3 Missense_Mutation p.W346C 0.14 tolerated(0.18) possibly_damaging(0.497) TCGA-F7-A623-01 20 47864829 47864829 C G ZNFX1 Missense_Mutation p.E1578Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-F7-A623-01 20 61296316 61296316 G T SLCO4A1 Silent p.T384T 0.26 TCGA-F7-A623-01 21 22656567 22656567 A C NCAM2 Missense_Mutation p.I62L 0.16 tolerated(1) benign(0.007) TCGA-F7-A623-01 21 31864161 31864161 A T KRTAP19-3 Missense_Mutation p.C39S 0.26 tolerated_low_confidence(0.61) unknown(0) TCGA-F7-A623-01 21 38460600 38460600 C G TTC3 Missense_Mutation p.Q98E 0.21 tolerated(0.89) benign(0.015) TCGA-F7-A623-01 21 41385186 41385186 C A DSCAM Missense_Mutation p.K1938N 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.63) TCGA-F7-A623-01 21 45999786 45999786 G A KRTAP10-5 Missense_Mutation p.L224F 0.09 deleterious(0.01) probably_damaging(0.925) TCGA-F7-A623-01 22 35809934 35809934 C G MCM5 Silent p.A386A 0.12 TCGA-F7-A623-01 22 41566523 41566523 A C EP300 Missense_Mutation p.Y1467S 0.59 probably_damaging(1) TCGA-F7-A623-01 22 43537207 43537207 C T MCAT Missense_Mutation p.A158T 0.12 tolerated(0.36) probably_damaging(0.917) TCGA-F7-A623-01 22 44967348 44967348 C G LINC00207 RNA 0.13 TCGA-F7-A623-01 2 113089497 113089497 C T ZC3H6 Missense_Mutation p.S1001L 0.14 tolerated(0.32) benign(0.006) TCGA-F7-A623-01 2 113148622 113148622 T C RGPD8 Missense_Mutation p.Y876C 0.46 deleterious(0.03) benign(0.002) TCGA-F7-A623-01 2 118582169 118582169 C T DDX18 Missense_Mutation p.S364F 0.10 deleterious(0) probably_damaging(0.999) TCGA-F7-A623-01 2 128383016 128383016 T C MYO7B Missense_Mutation p.V1348A 0.05 tolerated(0.18) benign(0.242) TCGA-F7-A623-01 2 152325272 152325272 T C RIF1 Splice_Site p.X2314_splice 0.16 TCGA-F7-A623-01 2 163213292 163213292 T C GCA Missense_Mutation p.F111L 0.08 tolerated(0.06) benign(0.296) TCGA-F7-A623-01 2 166201151 166201151 C A SCN2A Missense_Mutation p.N883K 0.13 deleterious(0) benign(0.169) TCGA-F7-A623-01 2 167313566 167313566 C T SCN7A Silent p.K368K 0.18 TCGA-F7-A623-01 2 168100467 168100467 A G XIRP2 Silent p.E855E 0.29 TCGA-F7-A623-01 2 169764145 169764145 G A G6PC2 Silent p.L208L 0.18 TCGA-F7-A623-01 2 179439089 179439089 G C TTN Missense_Mutation p.P23924A 0.12 TCGA-F7-A623-01 2 179498394 179498394 G T TTN Missense_Mutation p.P14231H 0.41 TCGA-F7-A623-01 2 196915915 196915915 G C DNAH7 Missense_Mutation p.S46C 0.08 tolerated_low_confidence(0.07) benign(0.376) TCGA-F7-A623-01 2 201950387 201950387 G C NDUFB3 3'UTR 0.09 TCGA-F7-A623-01 2 203772652 203772652 G C WDR12 Missense_Mutation p.I24M 0.12 deleterious(0) possibly_damaging(0.624) TCGA-F7-A623-01 2 223496381 223496381 C T FARSB Missense_Mutation p.R243K 0.38 tolerated(1) benign(0) TCGA-F7-A623-01 2 25047389 25047389 C T ADCY3 Missense_Mutation p.R865Q 0.08 deleterious(0) probably_damaging(0.983) TCGA-F7-A623-01 2 48809492 48809492 G A STON1-GTF2A1L Missense_Mutation p.V574I 0.16 deleterious(0) probably_damaging(0.997) TCGA-F7-A623-01 2 68361919 68361919 T C WDR92 Missense_Mutation p.T261A 0.22 deleterious(0) benign(0.064) TCGA-F7-A623-01 2 79312679 79312679 C A REG1B Missense_Mutation p.W124C 0.11 deleterious(0) probably_damaging(0.97) TCGA-F7-A623-01 2 87211901 87211901 A G RGPD1 Missense_Mutation p.Y861C 0.09 deleterious(0.02) benign(0.001) TCGA-F7-A623-01 2 98737844 98737844 G A VWA3B Missense_Mutation p.E209K 0.24 tolerated(0.88) benign(0.02) TCGA-F7-A623-01 3 127703068 127703068 C T KBTBD12 Nonsense_Mutation p.R607* 0.10 TCGA-F7-A623-01 3 130282222 130282222 G T COL6A6 Silent p.G125G 0.33 TCGA-F7-A623-01 3 132390725 132390725 G A UBA5 Silent p.A228A 0.11 TCGA-F7-A623-01 3 134885840 134885840 C - EPHB1 Frame_Shift_Del p.T584Kfs*8 0.08 TCGA-F7-A623-01 3 137882255 137882255 C T DBR1 Missense_Mutation p.D293N 0.16 tolerated(1) benign(0.003) TCGA-F7-A623-01 3 140785637 140785637 G A SPSB4 Missense_Mutation p.D231N 0.04 deleterious(0.05) benign(0.024) TCGA-F7-A623-01 3 15137556 15137556 C T ZFYVE20 Silent p.Q24Q 0.10 TCGA-F7-A623-01 3 159604002 159604002 G A IQCJ-SCHIP1 Silent p.Q371Q 0.05 TCGA-F7-A623-01 3 172766782 172766782 G C SPATA16 Missense_Mutation p.L239V 0.09 deleterious(0.05) possibly_damaging(0.567) TCGA-F7-A623-01 3 195611811 195611811 C T TNK2 Missense_Mutation p.G173R 0.06 tolerated(0.14) benign(0.268) TCGA-F7-A623-01 3 38180479 38180479 G A MYD88 Silent p.L109L 0.18 TCGA-F7-A623-01 3 65367601 65367601 G A MAGI1 Silent p.A884A 0.43 TCGA-F7-A623-01 3 69097184 69097184 G A TMF1 Silent p.D224D 0.18 TCGA-F7-A623-01 3 7188348 7188348 A T GRM7 Missense_Mutation p.K243N 0.17 deleterious(0.02) benign(0.161) TCGA-F7-A623-01 3 7188349 7188349 G T GRM7 Nonsense_Mutation p.E244* 0.17 TCGA-F7-A623-01 3 89156802 89156802 A G EPHA3 5'UTR 0.50 TCGA-F7-A623-01 4 105412166 105412166 G T CXXC4 Missense_Mutation p.A265E 0.12 deleterious(0) probably_damaging(0.961) TCGA-F7-A623-01 4 109088724 109088724 C A LEF1 Missense_Mutation p.S67I 0.29 deleterious(0) benign(0.261) TCGA-F7-A623-01 4 126239951 126239951 G C FAT4 Missense_Mutation p.Q795H 0.13 probably_damaging(0.973) TCGA-F7-A623-01 4 146460970 146460970 C G SMAD1 Missense_Mutation p.L139V 0.12 deleterious(0.03) probably_damaging(0.913) TCGA-F7-A623-01 4 158233977 158233977 C T GRIA2 Missense_Mutation p.R206C 0.13 deleterious(0.03) possibly_damaging(0.752) TCGA-F7-A623-01 4 186274708 186274708 G A SNX25 Missense_Mutation p.A682T 0.22 deleterious(0) possibly_damaging(0.792) TCGA-F7-A623-01 4 3430357 3430357 C A RGS12 Missense_Mutation p.P1162T 0.17 deleterious(0.01) benign(0.298) TCGA-F7-A623-01 4 42403039 42403039 C T SHISA3 Silent p.Y96Y 0.11 TCGA-F7-A623-01 4 5624391 5624391 C T EVC2 Missense_Mutation p.E792K 0.14 deleterious(0) probably_damaging(0.997) TCGA-F7-A623-01 4 72399993 72399993 C T SLC4A4 Missense_Mutation p.P777L 0.11 deleterious(0) probably_damaging(0.999) TCGA-F7-A623-01 4 76861953 76861953 G A NAAA Silent p.P50P 0.06 TCGA-F7-A623-01 4 83793033 83793033 G A SEC31A Intron 0.27 TCGA-F7-A623-01 4 85664939 85664939 C G WDFY3 Missense_Mutation p.R1996T 0.45 tolerated(0.45) benign(0.053) TCGA-F7-A623-01 4 94145812 94145812 T A GRID2 Silent p.A337A 0.07 TCGA-F7-A623-01 4 96035912 96035912 C G BMPR1B Missense_Mutation p.S92C 0.25 tolerated(0.05) possibly_damaging(0.463) TCGA-F7-A623-01 5 101599462 101599462 G T SLCO4C1 Silent p.I275I 0.20 TCGA-F7-A623-01 5 101599463 101599463 A G SLCO4C1 Missense_Mutation p.I275T 0.20 deleterious(0.03) benign(0.042) TCGA-F7-A623-01 5 139740338 139740338 C A SLC4A9 Missense_Mutation p.L82M 0.29 tolerated_low_confidence(0.3) benign(0.043) TCGA-F7-A623-01 5 140754227 140754227 G C PCDHGA6 Missense_Mutation p.E193Q 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.817) TCGA-F7-A623-01 5 147207631 147207631 C T SPINK1 Missense_Mutation p.D50N 0.29 deleterious(0.03) benign(0.137) TCGA-F7-A623-01 5 15937094 15937094 G A FBXL7 Silent p.L425L 0.13 TCGA-F7-A623-01 5 16177931 16177931 G T MARCH11 Nonsense_Mutation p.C199* 0.08 TCGA-F7-A623-01 5 176675242 176675242 G A NSD1 Missense_Mutation p.E1520K 0.12 deleterious(0.01) benign(0.028) TCGA-F7-A623-01 5 179757716 179757716 C T GFPT2 Missense_Mutation p.R173K 0.09 tolerated(0.8) benign(0.006) TCGA-F7-A623-01 5 26988368 26988368 G C CDH9 Missense_Mutation p.Q25E 0.13 tolerated(0.83) benign(0) TCGA-F7-A623-01 5 34867132 34867132 G A TTC23L Silent p.Q266Q 0.53 TCGA-F7-A623-01 5 34867133 34867133 C T TTC23L Silent p.L267L 0.53 TCGA-F7-A623-01 5 36181968 36181968 C T SKP2 Silent p.I370I 0.42 TCGA-F7-A623-01 5 477500 477500 G A SLC9A3 Silent p.N569N 0.09 TCGA-F7-A623-01 5 7414795 7414795 G A ADCY2 Missense_Mutation p.R107H 0.16 deleterious(0.04) benign(0.223) TCGA-F7-A623-01 5 7626323 7626323 G C ADCY2 Missense_Mutation p.G205A 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-F7-A623-01 5 78585955 78585955 G A JMY Silent p.E406E 0.14 TCGA-F7-A623-01 6 133703554 133703554 G T EYA4 Missense_Mutation p.D20Y 0.13 deleterious_low_confidence(0.01) benign(0.144) TCGA-F7-A623-01 6 144086875 144086875 C T PHACTR2 Missense_Mutation p.T391M 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-F7-A623-01 6 146720163 146720163 T A GRM1 Nonsense_Mutation p.L663* 0.24 TCGA-F7-A623-01 6 167754936 167754936 G C TTLL2 Silent p.T516T 0.15 TCGA-F7-A623-01 6 168352811 168352811 G A MLLT4 Missense_Mutation p.D1586N 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.521) TCGA-F7-A623-01 6 31747296 31747296 G A VARS Silent p.P1102P 0.09 TCGA-F7-A623-01 6 44971387 44971387 T C SUPT3H Intron 0.40 TCGA-F7-A623-01 6 52343897 52343897 C T EFHC1 Silent p.D447D 0.14 TCGA-F7-A623-01 6 53385621 53385621 A G GCLC Missense_Mutation p.I134T 0.06 tolerated(0.38) benign(0.01) TCGA-F7-A623-01 6 70812083 70812083 C A COL19A1 Missense_Mutation p.P416H 0.11 tolerated(0.11) unknown(0) TCGA-F7-A623-01 6 87966523 87966523 A G ZNF292 Missense_Mutation p.N1059S 0.39 tolerated(0.25) benign(0.003) TCGA-F7-A623-01 7 100816600 100816600 T C NAT16 Missense_Mutation p.K172E 0.29 deleterious(0) possibly_damaging(0.536) TCGA-F7-A623-01 7 111846846 111846846 G T ZNF277 Silent p.G25G 0.08 TCGA-F7-A623-01 7 121651100 121651100 G A PTPRZ1 Missense_Mutation p.G667E 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-F7-A623-01 7 128446756 128446756 G A CCDC136 Silent p.R421R 0.12 TCGA-F7-A623-01 7 136912720 136912720 T C PTN 3'UTR 0.10 TCGA-F7-A623-01 7 149171666 149171666 G A ZNF746 Missense_Mutation p.R583C 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-F7-A623-01 7 151835921 151835921 A C KMT2C Missense_Mutation p.I4868S 0.26 probably_damaging(0.999) TCGA-F7-A623-01 7 33059332 33059333 - A NT5C3A Frame_Shift_Ins p.T154Yfs*2 0.24 TCGA-F7-A623-01 7 72419264 72419264 T C POM121 3'UTR 0.24 TCGA-F7-A623-01 7 89749044 89749044 T A RP5-1121E10.2 Intron 0.16 TCGA-F7-A623-01 7 94539571 94539571 A C PPP1R9A Missense_Mutation p.E49A 0.37 deleterious(0.05) possibly_damaging(0.869) TCGA-F7-A623-01 7 97780751 97780751 A C LMTK2 Missense_Mutation p.N145T 0.35 deleterious(0.03) probably_damaging(0.933) TCGA-F7-A623-01 7 98552768 98552768 C T TRRAP Silent p.I1919I 0.19 TCGA-F7-A623-01 7 99757677 99757677 G A GAL3ST4 Silent p.P445P 0.14 TCGA-F7-A623-01 8 10470809 10470809 G C RP1L1 Missense_Mutation p.P267A 0.11 benign(0.075) TCGA-F7-A623-01 8 110460584 110460584 T G PKHD1L1 Missense_Mutation p.Y1997D 0.13 deleterious(0) probably_damaging(0.948) TCGA-F7-A623-01 8 110587650 110587650 C T SYBU Missense_Mutation p.V493M 0.10 tolerated(0.15) benign(0.167) TCGA-F7-A623-01 8 113308161 113308161 C A CSMD3 Missense_Mutation p.V2839F 0.17 deleterious(0) probably_damaging(0.995) TCGA-F7-A623-01 8 11995737 11995737 G T USP17L2 Missense_Mutation p.P178H 0.31 tolerated(0.07) benign(0.187) TCGA-F7-A623-01 8 139788209 139788209 C A COL22A1 Missense_Mutation p.K601N 0.07 unknown(0) TCGA-F7-A623-01 8 30040633 30040633 A G DCTN6 Missense_Mutation p.N173D 0.18 deleterious(0) possibly_damaging(0.844) TCGA-F7-A623-01 8 59512352 59512352 T C NSMAF Silent p.G501G 0.24 TCGA-F7-A623-01 8 6301914 6301914 A G MCPH1 Missense_Mutation p.D224G 0.13 tolerated(0.15) probably_damaging(0.99) TCGA-F7-A623-01 8 80942442 80942442 G T MRPS28 Missense_Mutation p.S14R 0.06 tolerated_low_confidence(0.18) benign(0.008) TCGA-F7-A623-01 9 116857599 116857599 G A KIF12 Silent p.S165S 0.16 TCGA-F7-A623-01 9 130487069 130487069 C G TTC16 Silent p.A384A 0.17 TCGA-F7-A623-01 9 136324160 136324160 C T ADAMTS13 Missense_Mutation p.S1381L 0.12 deleterious(0) probably_damaging(0.971) TCGA-F7-A623-01 9 21239292 21239292 G A IFNA14 3'UTR 0.12 TCGA-F7-A623-01 9 390521 390521 G A DOCK8 Silent p.V975V 0.07 TCGA-F7-A623-01 9 86586903 86586903 T C HNRNPK Missense_Mutation p.M283V 0.49 deleterious_low_confidence(0.05) benign(0.019) TCGA-F7-A623-01 9 99314080 99314080 G A CDC14B Silent p.F165F 0.10 TCGA-F7-A623-01 X 142605189 142605189 C A SPANXN3 Nonsense_Mutation p.E11* 0.61 TCGA-F7-A623-01 X 1742089 1742089 C T ASMT Missense_Mutation p.P43S 0.12 deleterious(0.03) possibly_damaging(0.461) TCGA-F7-A623-01 X 32235084 32235084 C G DMD Missense_Mutation p.K2129N 0.45 benign(0.197) TCGA-F7-A623-01 X 44879905 44879905 G C KDM6A Missense_Mutation p.R165P 0.47 deleterious(0) benign(0.167) TCGA-F7-A623-01 X 48460486 48460486 A T WDR13 Missense_Mutation p.H349L 0.64 tolerated(0.48) benign(0.001) TCGA-F7-A624-01 10 100013338 100013338 C A LOXL4 Missense_Mutation p.D603Y 0.12 deleterious(0) benign(0.161) TCGA-F7-A624-01 10 100190934 100190934 G A HPS1 Missense_Mutation p.H208Y 0.27 deleterious(0) probably_damaging(0.955) TCGA-F7-A624-01 10 101455822 101455822 A G ENTPD7 Missense_Mutation p.N318S 0.06 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 10 101716889 101716889 G A DNMBP Silent p.G114G 0.20 TCGA-F7-A624-01 10 101969541 101969541 T C CHUK Silent p.V313V 0.23 TCGA-F7-A624-01 10 102265734 102265734 G C SEC31B Intron 0.17 TCGA-F7-A624-01 10 102306312 102306312 A G HIF1AN Missense_Mutation p.T290A 0.24 tolerated(0.06) possibly_damaging(0.741) TCGA-F7-A624-01 10 102672977 102672977 C T FAM178A Missense_Mutation p.A37V 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F7-A624-01 10 102748696 102748696 C A C10orf2 Silent p.A243A 0.26 TCGA-F7-A624-01 10 102789994 102789994 G A PDZD7 5'UTR 0.24 TCGA-F7-A624-01 10 102824394 102824394 T C KAZALD1 Missense_Mutation p.V270A 0.25 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 10 103919045 103919045 G A NOLC1 Missense_Mutation p.A235T 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-F7-A624-01 10 103986316 103986316 C T ELOVL3 Missense_Mutation p.A4V 0.11 tolerated(0.21) benign(0.005) TCGA-F7-A624-01 10 104159907 104159907 G A NFKB2 Missense_Mutation p.A514T 0.32 tolerated(0.17) benign(0.311) TCGA-F7-A624-01 10 104404917 104404917 C T TRIM8 Silent p.D181D 0.20 TCGA-F7-A624-01 10 104660390 104660390 A T AS3MT Missense_Mutation p.D354V 0.22 tolerated(0.12) benign(0.09) TCGA-F7-A624-01 10 104678805 104678805 T C CNNM2 Missense_Mutation p.Y190H 0.24 tolerated(0.45) possibly_damaging(0.492) TCGA-F7-A624-01 10 104857078 104857081 AAGA - NT5C2 Frame_Shift_Del p.F246Lfs*14 0.20 TCGA-F7-A624-01 10 105201725 105201725 A G PDCD11 Missense_Mutation p.Q1567R 0.19 tolerated(0.31) benign(0.028) TCGA-F7-A624-01 10 105330708 105330708 C T NEURL1 Silent p.S55S 0.23 TCGA-F7-A624-01 10 105362410 105362410 C T SH3PXD2A Silent p.Q827Q 0.28 TCGA-F7-A624-01 10 105363391 105363391 G - SH3PXD2A Frame_Shift_Del p.S501Afs*43 0.32 TCGA-F7-A624-01 10 105363403 105363403 C T SH3PXD2A Silent p.P496P 0.08 TCGA-F7-A624-01 10 108589383 108589383 A G SORCS1 Silent p.G225G 0.30 TCGA-F7-A624-01 10 111647813 111647813 A G XPNPEP1 Missense_Mutation p.Y216H 0.08 tolerated(0.06) benign(0.054) TCGA-F7-A624-01 10 113933601 113933601 A G GPAM Missense_Mutation p.V139A 0.21 deleterious(0.01) benign(0.11) TCGA-F7-A624-01 10 114045891 114045891 A - TECTB Frame_Shift_Del p.N112Tfs*18 0.19 TCGA-F7-A624-01 10 114192220 114192220 G T ZDHHC6 Silent p.I335I 0.22 TCGA-F7-A624-01 10 115365940 115365940 A G NRAP Silent p.S1268S 0.27 TCGA-F7-A624-01 10 115485283 115485285 TCT - CASP7 In_Frame_Del p.F215del 0.30 TCGA-F7-A624-01 10 115595055 115595055 T C DCLRE1A Silent p.E993E 0.25 TCGA-F7-A624-01 10 115609831 115609832 - A DCLRE1A Frame_Shift_Ins p.K345* 0.18 TCGA-F7-A624-01 10 115668258 115668258 G A NHLRC2 Missense_Mutation p.G715D 0.23 tolerated(0.21) benign(0.004) TCGA-F7-A624-01 10 116225582 116225582 T C ABLIM1 Missense_Mutation p.Y439C 0.24 tolerated(0.17) benign(0.001) TCGA-F7-A624-01 10 116603660 116603660 C T FAM160B1 Missense_Mutation p.P326L 0.20 deleterious(0) probably_damaging(0.969) TCGA-F7-A624-01 10 118434729 118434729 G A HSPA12A Missense_Mutation p.R531C 0.32 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 10 119042842 119042842 T C PDZD8 Silent p.L1134L 0.07 TCGA-F7-A624-01 10 11998356 11998356 A G UPF2 Missense_Mutation p.V846A 0.23 deleterious(0) possibly_damaging(0.871) TCGA-F7-A624-01 10 120070376 120070376 T C FAM204A Missense_Mutation p.Y232C 0.25 deleterious(0.04) probably_damaging(1) TCGA-F7-A624-01 10 12021070 12021070 C - UPF2 Frame_Shift_Del p.D647Ifs*24 0.17 TCGA-F7-A624-01 10 121335072 121335072 T C TIAL1 3'UTR 0.23 TCGA-F7-A624-01 10 121431867 121431867 G - BAG3 Frame_Shift_Del p.Y205Tfs*6 0.24 TCGA-F7-A624-01 10 121431897 121431897 A G BAG3 Missense_Mutation p.E213G 0.27 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 10 121436443 121436443 C T BAG3 Silent p.T459T 0.22 TCGA-F7-A624-01 10 12197792 12197792 T C SEC61A2 Silent p.L160L 0.10 TCGA-F7-A624-01 10 123658396 123658396 G A ATE1 Missense_Mutation p.A301V 0.22 tolerated(0.4) benign(0.004) TCGA-F7-A624-01 10 123847263 123847263 G A TACC2 Missense_Mutation p.A1750T 0.36 benign(0.05) TCGA-F7-A624-01 10 124608784 124608784 G A FAM24B Silent p.C88C 0.26 TCGA-F7-A624-01 10 125528100 125528100 G A CPXM2 Missense_Mutation p.T414M 0.23 deleterious(0.05) probably_damaging(1) TCGA-F7-A624-01 10 126715969 126715969 T C CTBP2 Silent p.V120V 0.07 TCGA-F7-A624-01 10 127731634 127731634 T C ADAM12 Silent p.T696T 0.18 TCGA-F7-A624-01 10 12940342 12940342 T C CCDC3 3'UTR 0.25 TCGA-F7-A624-01 10 129866425 129866425 A G PTPRE Silent p.S294S 0.27 TCGA-F7-A624-01 10 129905653 129905653 G A MKI67 Missense_Mutation p.T1484M 0.24 tolerated(0.74) benign(0.109) TCGA-F7-A624-01 10 13222506 13222506 T C MCM10 Missense_Mutation p.S278P 0.26 deleterious(0.04) benign(0.109) TCGA-F7-A624-01 10 134017276 134017276 T A DPYSL4 Missense_Mutation p.I491N 0.25 tolerated(0.29) benign(0.258) TCGA-F7-A624-01 10 135012647 135012647 G A KNDC1 Missense_Mutation p.V879M 0.23 deleterious(0.04) possibly_damaging(0.61) TCGA-F7-A624-01 10 135038191 135038191 C T KNDC1 Missense_Mutation p.H1683Y 0.16 deleterious(0) possibly_damaging(0.885) TCGA-F7-A624-01 10 135038213 135038213 A G KNDC1 Missense_Mutation p.Y1690C 0.13 deleterious(0) probably_damaging(0.995) TCGA-F7-A624-01 10 135202471 135202471 T C PAOX Missense_Mutation p.V378A 0.05 deleterious(0) possibly_damaging(0.828) TCGA-F7-A624-01 10 13698938 13698938 C T FRMD4A Missense_Mutation p.R884H 0.18 tolerated(0.54) benign(0) TCGA-F7-A624-01 10 13699253 13699253 G A FRMD4A Missense_Mutation p.A779V 0.21 tolerated(0.3) probably_damaging(0.99) TCGA-F7-A624-01 10 13701455 13701455 G A FRMD4A Missense_Mutation p.A645V 0.20 tolerated_low_confidence(0.16) benign(0.026) TCGA-F7-A624-01 10 13708105 13708105 A G FRMD4A Missense_Mutation p.I532T 0.20 tolerated(0.07) benign(0.05) TCGA-F7-A624-01 10 17636370 17636370 A - PTPLA Frame_Shift_Del p.F206Lfs*23 0.19 TCGA-F7-A624-01 10 18828508 18828508 A T CACNB2 Missense_Mutation p.D613V 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.866) TCGA-F7-A624-01 10 22209773 22209773 A G DNAJC1 Missense_Mutation p.V164A 0.24 deleterious(0) probably_damaging(0.989) TCGA-F7-A624-01 10 23481613 23481613 T C PTF1A Missense_Mutation p.F52L 0.19 tolerated_low_confidence(0.09) benign(0.014) TCGA-F7-A624-01 10 24722076 24722076 A G KIAA1217 Missense_Mutation p.I236V 0.32 tolerated(0.21) probably_damaging(0.982) TCGA-F7-A624-01 10 27335415 27335415 T C ANKRD26 Missense_Mutation p.T618A 0.27 tolerated(0.61) benign(0.009) TCGA-F7-A624-01 10 27529294 27529294 A G ACBD5 Silent p.T45T 0.18 TCGA-F7-A624-01 10 28824585 28824585 T C WAC Missense_Mutation p.M58T 0.27 tolerated(0.05) possibly_damaging(0.885) TCGA-F7-A624-01 10 30602795 30602795 A T MTPAP Missense_Mutation p.F498I 0.27 tolerated(0.08) possibly_damaging(0.878) TCGA-F7-A624-01 10 31816166 31816166 T C ZEB1 Missense_Mutation p.S1118P 0.32 deleterious_low_confidence(0) benign(0.307) TCGA-F7-A624-01 10 33468827 33468827 T C NRP1 3'UTR 0.23 TCGA-F7-A624-01 10 35351986 35351986 T C CUL2 Missense_Mutation p.I61V 0.18 tolerated(1) benign(0.003) TCGA-F7-A624-01 10 35929076 35929076 T C FZD8 Missense_Mutation p.K428E 0.35 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 10 38120504 38120504 G A ZNF248 3'UTR 0.24 TCGA-F7-A624-01 10 43596084 43596084 A G RET Missense_Mutation p.N84S 0.24 tolerated_low_confidence(0.91) benign(0.014) TCGA-F7-A624-01 10 46998978 46998978 G A GPRIN2 Missense_Mutation p.R33Q 0.22 tolerated(0.3) benign(0.002) TCGA-F7-A624-01 10 47087638 47087638 C T NPY4R Silent p.N285N 0.17 TCGA-F7-A624-01 10 48387850 48387850 G A RBP3 Missense_Mutation p.R1010C 0.21 deleterious(0.04) possibly_damaging(0.689) TCGA-F7-A624-01 10 48428793 48428793 C T GDF10 Missense_Mutation p.A365T 0.27 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 10 48429034 48429034 C T GDF10 Silent p.A284A 0.30 TCGA-F7-A624-01 10 49444587 49444587 G A FRMPD2 Missense_Mutation p.P311S 0.27 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 10 5014490 5014490 G A AKR1C1 Missense_Mutation p.R223Q 0.27 deleterious(0.01) possibly_damaging(0.908) TCGA-F7-A624-01 10 50531538 50531538 T C C10orf71 Silent p.C316C 0.08 TCGA-F7-A624-01 10 50819857 50819857 G T SLC18A3 Missense_Mutation p.W357C 0.25 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 10 51579242 51579242 T C NCOA4 Missense_Mutation p.V50A 0.23 deleterious(0) possibly_damaging(0.724) TCGA-F7-A624-01 10 5242185 5242185 A G AKR1C4 Missense_Mutation p.I42M 0.23 deleterious(0) probably_damaging(0.976) TCGA-F7-A624-01 10 52566593 52566593 T C A1CF Missense_Mutation p.K561E 0.24 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-F7-A624-01 10 532416 532416 T C DIP2C Missense_Mutation p.Y47C 0.25 deleterious(0.01) benign(0.266) TCGA-F7-A624-01 10 61412691 61412691 T C SLC16A9 Missense_Mutation p.T457A 0.10 deleterious(0) probably_damaging(0.968) TCGA-F7-A624-01 10 61815451 61815451 G T ANK3 Missense_Mutation p.H4344N 0.24 benign(0.016) TCGA-F7-A624-01 10 61898753 61898753 T C ANK3 Missense_Mutation p.M903V 0.21 benign(0) TCGA-F7-A624-01 10 62553850 62553850 C T CDK1 3'UTR 0.36 TCGA-F7-A624-01 10 62634740 62634740 T C RHOBTB1 Missense_Mutation p.E596G 0.20 deleterious(0.03) benign(0.424) TCGA-F7-A624-01 10 64573155 64573155 G A EGR2 Missense_Mutation p.R415C 0.15 deleterious(0) possibly_damaging(0.876) TCGA-F7-A624-01 10 65358936 65358936 G C REEP3 Missense_Mutation p.D104H 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 10 68686328 68686328 G C LRRTM3 5'UTR 0.20 TCGA-F7-A624-01 10 68857578 68857578 T C LRRTM3 3'UTR 0.14 TCGA-F7-A624-01 10 70332076 70332076 T - TET1 5'UTR 0.43 TCGA-F7-A624-01 10 70652537 70652537 A G STOX1 3'UTR 0.21 TCGA-F7-A624-01 10 70719971 70719971 C T DDX21 Missense_Mutation p.A166V 0.07 tolerated(0.18) benign(0.002) TCGA-F7-A624-01 10 70741317 70741317 G A DDX21 Missense_Mutation p.A688T 0.20 tolerated(0.55) benign(0.009) TCGA-F7-A624-01 10 70922189 70922189 A G VPS26A Silent p.G193G 0.23 TCGA-F7-A624-01 10 71164842 71164842 T C TACR2 Splice_Site p.X313_splice 0.22 TCGA-F7-A624-01 10 71332389 71332389 T C NEUROG3 Silent p.Q137Q 0.22 TCGA-F7-A624-01 10 71332448 71332448 T C NEUROG3 Missense_Mutation p.K118E 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 10 71851566 71851566 C T H2AFY2 Silent p.P111P 0.18 TCGA-F7-A624-01 10 71912253 71912253 C T SAR1A Nonsense_Mutation p.W192* 0.19 TCGA-F7-A624-01 10 73767557 73767557 C T CHST3 Silent p.N256N 0.29 TCGA-F7-A624-01 10 74104736 74104736 T C DNAJB12 Missense_Mutation p.T129A 0.23 deleterious(0.01) benign(0.253) TCGA-F7-A624-01 10 74770751 74770751 A G P4HA1 Silent p.V471V 0.22 TCGA-F7-A624-01 10 74885147 74885147 C A NUDT13 Intron 0.17 TCGA-F7-A624-01 10 74923705 74923705 A - ECD 5'UTR 0.24 TCGA-F7-A624-01 10 75013853 75013853 C T TTC18 Intron 0.24 TCGA-F7-A624-01 10 75058827 75058827 A T TTC18 Missense_Mutation p.N520K 0.31 deleterious(0.01) possibly_damaging(0.641) TCGA-F7-A624-01 10 75187958 75187958 T G MSS51 Missense_Mutation p.T29P 0.07 tolerated(0.17) benign(0.159) TCGA-F7-A624-01 10 75277428 75277428 G A USP54 Missense_Mutation p.A919V 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-F7-A624-01 10 75553466 75553466 C - ZSWIM8 Frame_Shift_Del p.P813Lfs*22 0.21 TCGA-F7-A624-01 10 76803760 76803760 G A DUPD1 Silent p.D72D 0.28 TCGA-F7-A624-01 10 79581222 79581222 G A DLG5 Missense_Mutation p.A1007V 0.29 tolerated(0.28) benign(0) TCGA-F7-A624-01 10 79782066 79782066 T C POLR3A Missense_Mutation p.N241S 0.32 tolerated(0.12) benign(0.014) TCGA-F7-A624-01 10 82363435 82363435 G A SH2D4B Silent p.T248T 0.17 TCGA-F7-A624-01 10 85991728 85991728 G T LRIT1 Silent p.A609A 0.22 TCGA-F7-A624-01 10 85992579 85992579 A G LRIT1 Missense_Mutation p.Y326H 0.29 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 10 860989 860989 C T LARP4B Missense_Mutation p.V573M 0.27 deleterious(0.04) benign(0.004) TCGA-F7-A624-01 10 863782 863782 G T LARP4B Missense_Mutation p.S526R 0.27 deleterious(0.02) possibly_damaging(0.703) TCGA-F7-A624-01 10 87379725 87379725 A G GRID1 Silent p.D753D 0.26 TCGA-F7-A624-01 10 88425631 88425631 C T OPN4 3'UTR 0.40 TCGA-F7-A624-01 10 88753124 88753124 A G AGAP11 RNA 0.26 TCGA-F7-A624-01 10 88988124 88988124 C A NUTM2A Missense_Mutation p.P163T 0.20 deleterious(0.04) possibly_damaging(0.785) TCGA-F7-A624-01 10 88994346 88994346 C T NUTM2A Missense_Mutation p.L840F 0.33 tolerated(0.1) probably_damaging(0.998) TCGA-F7-A624-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.48 TCGA-F7-A624-01 10 91061833 91061833 G T IFIT2 5'UTR 0.18 TCGA-F7-A624-01 10 91178053 91178053 G A IFIT5 Missense_Mutation p.R366H 0.23 tolerated(0.22) benign(0.001) TCGA-F7-A624-01 10 91404753 91404753 T C PANK1 Missense_Mutation p.N103D 0.23 tolerated_low_confidence(0.17) benign(0.003) TCGA-F7-A624-01 10 92502258 92502258 T - HTR7 Frame_Shift_Del p.K474Rfs*3 0.19 TCGA-F7-A624-01 10 92675593 92675593 A G ANKRD1 Silent p.Y232Y 0.19 TCGA-F7-A624-01 10 94353185 94353185 A G KIF11 Missense_Mutation p.N18S 0.21 deleterious(0.01) benign(0.095) TCGA-F7-A624-01 10 94679786 94679786 T C EXOC6 Silent p.C289C 0.23 TCGA-F7-A624-01 10 95993879 95993879 A G PLCE1 Missense_Mutation p.K675R 0.18 tolerated(0.12) probably_damaging(0.999) TCGA-F7-A624-01 10 96117716 96117716 A G NOC3L Intron 0.33 TCGA-F7-A624-01 10 96291216 96291216 A G TBC1D12 Missense_Mutation p.Q753R 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-F7-A624-01 10 97779080 97779080 T C CC2D2B Missense_Mutation p.F215L 0.29 deleterious(0.02) benign(0.14) TCGA-F7-A624-01 10 97917855 97917855 T C ZNF518A RNA 0.27 TCGA-F7-A624-01 10 98127953 98127953 A G TLL2 Silent p.G980G 0.11 TCGA-F7-A624-01 10 98282044 98282044 G C TM9SF3 Missense_Mutation p.I582M 0.17 deleterious(0) probably_damaging(0.977) TCGA-F7-A624-01 10 98292810 98292810 T - TM9SF3 Frame_Shift_Del p.K441Nfs*44 0.22 TCGA-F7-A624-01 10 98311121 98311121 A G TM9SF3 Silent p.D280D 0.06 TCGA-F7-A624-01 10 98741103 98741103 G C C10orf12 5'UTR 0.21 TCGA-F7-A624-01 10 98741199 98741199 G A C10orf12 Missense_Mutation p.E18K 0.17 tolerated(0.25) benign(0.187) TCGA-F7-A624-01 10 98742051 98742051 A G C10orf12 Missense_Mutation p.T302A 0.07 tolerated(0.29) benign(0.009) TCGA-F7-A624-01 10 99695980 99695980 T C CRTAC1 Missense_Mutation p.D123G 0.23 deleterious(0) probably_damaging(0.973) TCGA-F7-A624-01 11 100170002 100170002 T C CNTN5 Missense_Mutation p.S832P 0.13 tolerated(0.22) probably_damaging(0.947) TCGA-F7-A624-01 11 1017584 1017584 T C MUC6 Silent p.S1739S 0.11 TCGA-F7-A624-01 11 102094469 102094469 T A YAP1 Missense_Mutation p.D383E 0.27 tolerated(0.15) benign(0.098) TCGA-F7-A624-01 11 102661201 102661201 G A MMP1 Missense_Mutation p.T451M 0.19 deleterious(0.01) possibly_damaging(0.63) TCGA-F7-A624-01 11 107965658 107965658 A - CUL5 Frame_Shift_Del p.N565Ifs*18 0.25 TCGA-F7-A624-01 11 108031919 108031919 G A NPAT Silent p.D1298D 0.20 TCGA-F7-A624-01 11 108032395 108032395 T C NPAT Missense_Mutation p.T1140A 0.08 tolerated(0.54) benign(0.005) TCGA-F7-A624-01 11 108225545 108225545 G A ATM Missense_Mutation p.E2932K 0.28 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 11 108381121 108381121 T C EXPH5 Missense_Mutation p.N1705D 0.10 tolerated(0.11) benign(0.03) TCGA-F7-A624-01 11 108562670 108562670 G A DDX10 Missense_Mutation p.R348Q 0.30 tolerated(0.1) benign(0.21) TCGA-F7-A624-01 11 108593750 108593750 G A DDX10 Missense_Mutation p.R509H 0.25 deleterious(0.01) probably_damaging(1) TCGA-F7-A624-01 11 110023726 110023726 A G ZC3H12C Missense_Mutation p.T286A 0.24 deleterious(0) benign(0.25) TCGA-F7-A624-01 11 111583056 111583056 C T SIK2 Missense_Mutation p.A408V 0.14 tolerated(0.11) benign(0.004) TCGA-F7-A624-01 11 111594826 111594826 A G SIK2 Silent p.Q918Q 0.25 TCGA-F7-A624-01 11 111731283 111731283 A G ALG9 Silent p.F13F 0.28 TCGA-F7-A624-01 11 111899652 111899652 T C DLAT Missense_Mutation p.Y215H 0.22 deleterious(0.05) possibly_damaging(0.82) TCGA-F7-A624-01 11 113288779 113288779 A T DRD2 Missense_Mutation p.I122N 0.20 deleterious(0) probably_damaging(0.934) TCGA-F7-A624-01 11 113856847 113856847 C T HTR3A Missense_Mutation p.R225W 0.23 tolerated(0.26) possibly_damaging(0.84) TCGA-F7-A624-01 11 11398738 11398738 G A GALNT18 Missense_Mutation p.A323V 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-F7-A624-01 11 115102132 115102132 G A CADM1 Missense_Mutation p.A168V 0.28 deleterious(0.03) possibly_damaging(0.604) TCGA-F7-A624-01 11 1156656 1156656 T A MUC5AC Missense_Mutation p.S225T 0.29 deleterious(0.03) benign(0.019) TCGA-F7-A624-01 11 116627929 116627929 T C BUD13 Missense_Mutation p.S567G 0.27 deleterious(0.03) benign(0.41) TCGA-F7-A624-01 11 116719879 116719879 G A SIK3 Missense_Mutation p.A1153V 0.30 deleterious_low_confidence(0.02) benign(0.06) TCGA-F7-A624-01 11 116767008 116767008 G T SIK3 Missense_Mutation p.L218M 0.30 deleterious(0.01) possibly_damaging(0.855) TCGA-F7-A624-01 11 117222548 117222548 C T CEP164 Silent p.N79N 0.19 TCGA-F7-A624-01 11 117280361 117280361 G A CEP164 Missense_Mutation p.R1259H 0.27 tolerated(0.15) benign(0.103) TCGA-F7-A624-01 11 117280429 117280429 C A CEP164 Missense_Mutation p.L1282M 0.28 deleterious(0) probably_damaging(0.984) TCGA-F7-A624-01 11 118369199 118369199 A - KMT2A Frame_Shift_Del p.V1975Yfs*9 0.26 TCGA-F7-A624-01 11 118404221 118404221 A G TMEM25 Missense_Mutation p.T254A 0.28 tolerated(0.35) benign(0.005) TCGA-F7-A624-01 11 118773010 118773010 C - BCL9L Frame_Shift_Del p.G481Afs*21 0.26 TCGA-F7-A624-01 11 118888739 118888739 T C RPS25 Missense_Mutation p.K10E 0.30 tolerated(0.17) probably_damaging(0.945) TCGA-F7-A624-01 11 118898461 118898461 G A SLC37A4 Missense_Mutation p.T168M 0.27 tolerated(0.08) benign(0.139) TCGA-F7-A624-01 11 119290893 119290893 T C THY1 Missense_Mutation p.T81A 0.23 deleterious(0.04) benign(0.257) TCGA-F7-A624-01 11 119535589 119535589 G A PVRL1 Silent p.A474A 0.28 TCGA-F7-A624-01 11 120300189 120300189 T C ARHGEF12 Missense_Mutation p.L209P 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-F7-A624-01 11 12241954 12241954 G A MICAL2 Silent p.E385E 0.27 TCGA-F7-A624-01 11 122928453 122928453 C G HSPA8 Missense_Mutation p.E644Q 0.18 deleterious_low_confidence(0) benign(0.403) TCGA-F7-A624-01 11 123484353 123484353 C T GRAMD1B Silent p.I595I 0.09 TCGA-F7-A624-01 11 123601221 123601221 T C ZNF202 Missense_Mutation p.K126E 0.07 deleterious(0.01) possibly_damaging(0.458) TCGA-F7-A624-01 11 123756248 123756248 T C TMEM225 5'UTR 0.25 TCGA-F7-A624-01 11 123814022 123814022 T C OR6T1 Missense_Mutation p.D175G 0.26 deleterious(0.02) benign(0.071) TCGA-F7-A624-01 11 124135186 124135186 A G OR8G5 Missense_Mutation p.Y155C 0.25 deleterious(0.02) benign(0.329) TCGA-F7-A624-01 11 124253109 124253109 C T OR8B2 Missense_Mutation p.G44D 0.23 deleterious_low_confidence(0) possibly_damaging(0.543) TCGA-F7-A624-01 11 124266967 124266967 T C OR8B3 Missense_Mutation p.Y94C 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-F7-A624-01 11 124637135 124637135 G A MSANTD2 Silent p.S487S 0.28 TCGA-F7-A624-01 11 125617283 125617283 T C PATE1 Missense_Mutation p.V34A 0.21 tolerated(0.4) benign(0.003) TCGA-F7-A624-01 11 125853841 125853841 C T CDON Missense_Mutation p.G974D 0.21 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 11 1261492 1261492 T C MUC5B Missense_Mutation p.I1286T 0.10 unknown(0) TCGA-F7-A624-01 11 1268066 1268066 C - MUC5B Frame_Shift_Del p.S3321Pfs*27 0.18 TCGA-F7-A624-01 11 1272562 1272562 A T MUC5B Missense_Mutation p.I4818F 0.23 unknown(0) TCGA-F7-A624-01 11 128839216 128839216 T C ARHGAP32 Silent p.R1950R 0.05 TCGA-F7-A624-01 11 128848689 128848689 C G ARHGAP32 Missense_Mutation p.E686Q 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-F7-A624-01 11 12958824 12958824 A G TEAD1 3'UTR 0.19 TCGA-F7-A624-01 11 129752378 129752378 G - NFRKB Frame_Shift_Del p.S376Lfs*34 0.14 TCGA-F7-A624-01 11 130343138 130343138 T C ADAMTS15 Missense_Mutation p.Y759H 0.05 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 11 132527055 132527055 G A OPCML Silent p.D109D 0.28 TCGA-F7-A624-01 11 15994655 15994655 T C SOX6 Silent p.Q709Q 0.22 TCGA-F7-A624-01 11 16010593 16010593 A T SOX6 Missense_Mutation p.I619N 0.09 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 11 16812423 16812423 T C PLEKHA7 Missense_Mutation p.T992A 0.23 tolerated(0.34) benign(0.001) TCGA-F7-A624-01 11 17794190 17794191 - C KCNC1 Intron 0.28 TCGA-F7-A624-01 11 1780830 1780830 G - CTSD Frame_Shift_Del p.Q90Sfs*43 0.14 TCGA-F7-A624-01 11 18010233 18010233 G T SERGEF Missense_Mutation p.P252H 0.26 deleterious(0.02) benign(0.103) TCGA-F7-A624-01 11 18159410 18159410 A G MRGPRX3 Missense_Mutation p.T221A 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-F7-A624-01 11 18319255 18319255 T C HPS5 Missense_Mutation p.T392A 0.06 tolerated(0.55) benign(0.008) TCGA-F7-A624-01 11 18332378 18332378 G A HPS5 Silent p.L129L 0.25 TCGA-F7-A624-01 11 18428863 18428863 C T LDHA 3'UTR 0.17 TCGA-F7-A624-01 11 18587996 18587996 T C UEVLD Missense_Mutation p.M131V 0.22 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 11 1862091 1862093 GAG - TNNI2 In_Frame_Del p.E78del 0.34 TCGA-F7-A624-01 11 1862298 1862298 G C TNNI2 Missense_Mutation p.G105A 0.19 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 11 18735645 18735645 T C IGSF22 Missense_Mutation p.I617V 0.24 tolerated(1) benign(0) TCGA-F7-A624-01 11 18743175 18743175 T C IGSF22 Silent p.K95K 0.10 TCGA-F7-A624-01 11 18955510 18955510 G A MRGPRX1 Silent p.F274F 0.31 TCGA-F7-A624-01 11 18955628 18955628 T C MRGPRX1 Missense_Mutation p.Q235R 0.13 tolerated(0.12) benign(0.002) TCGA-F7-A624-01 11 19077629 19077629 A G MRGPRX2 Silent p.T107T 0.15 TCGA-F7-A624-01 11 1957456 1957456 C T TNNT3 Intron 0.27 TCGA-F7-A624-01 11 1977618 1977618 C T MRPL23 Missense_Mutation p.R144W 0.28 deleterious(0) probably_damaging(0.972) TCGA-F7-A624-01 11 20178608 20178608 G A DBX1 Missense_Mutation p.A216V 0.09 tolerated(0.08) possibly_damaging(0.457) TCGA-F7-A624-01 11 20181531 20181531 C T DBX1 Missense_Mutation p.A114T 0.33 tolerated(0.07) benign(0.055) TCGA-F7-A624-01 11 2154836 2154836 G A IGF2 Missense_Mutation p.R129C 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-F7-A624-01 11 22396403 22396403 A G SLC17A6 Missense_Mutation p.T382A 0.25 deleterious(0) benign(0.445) TCGA-F7-A624-01 11 25004699 25004699 A G LUZP2 Missense_Mutation p.T209A 0.23 deleterious(0) probably_damaging(0.98) TCGA-F7-A624-01 11 26692517 26692517 A G SLC5A12 3'UTR 0.33 TCGA-F7-A624-01 11 28104410 28104410 T C KIF18A Missense_Mutation p.I419V 0.27 tolerated(0.12) benign(0.001) TCGA-F7-A624-01 11 285213 285213 C T NLRP6 Missense_Mutation p.A863V 0.20 tolerated(0.14) benign(0.014) TCGA-F7-A624-01 11 2975794 2975794 A G NAP1L4 Missense_Mutation p.L333P 0.21 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 11 3128514 3128514 C A OSBPL5 Missense_Mutation p.Q346H 0.22 deleterious(0.02) probably_damaging(0.954) TCGA-F7-A624-01 11 3141689 3141689 G A OSBPL5 Missense_Mutation p.L190F 0.18 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 11 33565125 33565125 G A KIAA1549L Silent p.S375S 0.22 TCGA-F7-A624-01 11 33565764 33565764 A G KIAA1549L Silent p.T588T 0.22 TCGA-F7-A624-01 11 33631336 33631336 T G KIAA1549L Nonsense_Mutation p.Y1404* 0.19 TCGA-F7-A624-01 11 34074146 34074146 T C CAPRIN1 Missense_Mutation p.V60A 0.33 deleterious(0.01) possibly_damaging(0.64) TCGA-F7-A624-01 11 35640687 35640687 T C FJX1 Missense_Mutation p.L168P 0.28 deleterious(0) probably_damaging(0.96) TCGA-F7-A624-01 11 36103271 36103271 C T LDLRAD3 Missense_Mutation p.R88C 0.28 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 11 36520057 36520057 C T TRAF6 Missense_Mutation p.E144K 0.25 deleterious(0.03) benign(0.008) TCGA-F7-A624-01 11 36597387 36597387 A T RAG1 Missense_Mutation p.N845Y 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F7-A624-01 11 3688681 3688681 C T CHRNA10 Missense_Mutation p.V226I 0.11 tolerated(0.46) benign(0.386) TCGA-F7-A624-01 11 404002 404002 C - PKP3 Frame_Shift_Del p.P714Qfs*9 0.26 TCGA-F7-A624-01 11 404683 404683 C T PKP3 3'UTR 0.18 TCGA-F7-A624-01 11 429622 429622 T C ANO9 Missense_Mutation p.Q288R 0.18 tolerated(0.66) benign(0.022) TCGA-F7-A624-01 11 43364020 43364020 G - API5 Frame_Shift_Del p.G513Afs*14 0.19 TCGA-F7-A624-01 11 44089200 44089200 A T ACCS Missense_Mutation p.D8V 0.20 deleterious_low_confidence(0.01) benign(0.028) TCGA-F7-A624-01 11 44129281 44129281 T C EXT2 Missense_Mutation p.Y40H 0.21 deleterious_low_confidence(0.01) benign(0.01) TCGA-F7-A624-01 11 44296905 44296905 C T ALX4 Missense_Mutation p.R257H 0.25 deleterious(0) probably_damaging(0.995) TCGA-F7-A624-01 11 46332639 46332639 G A CREB3L1 Missense_Mutation p.G218S 0.34 deleterious(0.03) benign(0.135) TCGA-F7-A624-01 11 46407278 46407278 G - CHRM4 Frame_Shift_Del p.P277Rfs*69 0.18 TCGA-F7-A624-01 11 46700995 46700995 G A ARHGAP1 Missense_Mutation p.P351S 0.28 tolerated(0.44) benign(0) TCGA-F7-A624-01 11 46837797 46837797 T C CKAP5 Missense_Mutation p.N137S 0.05 tolerated(0.06) benign(0.201) TCGA-F7-A624-01 11 47201009 47201009 A G PACSIN3 Silent p.D244D 0.32 TCGA-F7-A624-01 11 47356682 47356682 C T MYBPC3 Missense_Mutation p.R939Q 0.23 deleterious(0.02) probably_damaging(0.934) TCGA-F7-A624-01 11 47595031 47595031 A G KBTBD4 Silent p.G352G 0.25 TCGA-F7-A624-01 11 47603695 47603695 A G NDUFS3 Missense_Mutation p.Y146C 0.28 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 11 47612220 47612220 A G C1QTNF4 Missense_Mutation p.V48A 0.24 deleterious(0) benign(0.015) TCGA-F7-A624-01 11 47684631 47684631 G - AGBL2 Frame_Shift_Del p.L828Wfs*8 0.18 TCGA-F7-A624-01 11 47732033 47732033 G A AGBL2 Missense_Mutation p.T43M 0.24 tolerated_low_confidence(0.08) benign(0.022) TCGA-F7-A624-01 11 47772692 47772692 T C FNBP4 Intron 0.26 TCGA-F7-A624-01 11 47861552 47861552 A T NUP160 Missense_Mutation p.D197E 0.10 deleterious(0.02) possibly_damaging(0.768) TCGA-F7-A624-01 11 4825605 4825605 C T OR52R1 Silent p.V2V 0.14 TCGA-F7-A624-01 11 48286262 48286262 A G OR4X1 Missense_Mutation p.I284V 0.29 deleterious(0.02) benign(0.032) TCGA-F7-A624-01 11 4870327 4870327 G A OR51S1 Missense_Mutation p.P38S 0.21 deleterious(0.02) benign(0.126) TCGA-F7-A624-01 11 49207285 49207285 C A FOLH1 Missense_Mutation p.Q254H 0.22 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 11 5067889 5067889 C T OR52J3 Missense_Mutation p.A45V 0.21 tolerated(0.91) benign(0.005) TCGA-F7-A624-01 11 5172715 5172715 A G OR52A1 Silent p.Y295Y 0.24 TCGA-F7-A624-01 11 55111035 55111035 G A OR4A16 Missense_Mutation p.R120H 0.22 deleterious_low_confidence(0.04) benign(0.082) TCGA-F7-A624-01 11 55339883 55339883 G A OR4C16 Missense_Mutation p.E94K 0.19 tolerated(0.12) possibly_damaging(0.711) TCGA-F7-A624-01 11 55541197 55541197 C G OR5D13 Missense_Mutation p.S95C 0.28 deleterious(0.02) benign(0.114) TCGA-F7-A624-01 11 55541364 55541364 T C OR5D13 Missense_Mutation p.Y151H 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-F7-A624-01 11 55606662 55606662 G C OR5D16 Missense_Mutation p.M145I 0.29 tolerated(0.08) benign(0.014) TCGA-F7-A624-01 11 5602245 5602245 C T OR52B6 Silent p.L47L 0.18 TCGA-F7-A624-01 11 56230001 56230001 T A OR5M9 Nonsense_Mutation p.K293* 0.06 TCGA-F7-A624-01 11 56258765 56258765 T C OR5M8 Missense_Mutation p.T28A 0.30 tolerated(0.12) benign(0) TCGA-F7-A624-01 11 56409225 56409225 C T OR5AP2 Missense_Mutation p.V231I 0.23 tolerated(1) benign(0.002) TCGA-F7-A624-01 11 5653605 5653605 G A TRIM34 Missense_Mutation p.C15Y 0.22 deleterious(0.01) probably_damaging(0.914) TCGA-F7-A624-01 11 5655876 5655876 G A TRIM34 Missense_Mutation p.E179K 0.15 deleterious(0) possibly_damaging(0.687) TCGA-F7-A624-01 11 57076249 57076249 A G TNKS1BP1 Silent p.G1312G 0.07 TCGA-F7-A624-01 11 57256751 57256751 G T SLC43A1 Silent p.T436T 0.30 TCGA-F7-A624-01 11 57310215 57310215 A G SMTNL1 Missense_Mutation p.T52A 0.33 tolerated(1) benign(0) TCGA-F7-A624-01 11 57464277 57464277 T C ZDHHC5 Missense_Mutation p.Y352H 0.15 deleterious(0.01) possibly_damaging(0.851) TCGA-F7-A624-01 11 5776763 5776763 C T OR52N4 Missense_Mutation p.R265C 0.19 deleterious(0.02) benign(0.104) TCGA-F7-A624-01 11 57886446 57886446 G T OR9I1 Silent p.I157I 0.09 TCGA-F7-A624-01 11 5799574 5799574 A G OR52N5 Silent p.S97S 0.17 TCGA-F7-A624-01 11 58206860 58206860 A G OR5B12 Silent p.F255F 0.30 TCGA-F7-A624-01 11 58384240 58384240 A G ZFP91 Missense_Mutation p.H385R 0.17 deleterious(0.01) possibly_damaging(0.882) TCGA-F7-A624-01 11 58949498 58949498 G A DTX4 Silent p.G166G 0.23 TCGA-F7-A624-01 11 59245082 59245082 T - OR4D10 Frame_Shift_Del p.L62Cfs*56 0.20 TCGA-F7-A624-01 11 59245839 59245839 A - OR4D10 3'UTR 0.26 TCGA-F7-A624-01 11 61026740 61026740 C T VWCE Missense_Mutation p.G759R 0.25 tolerated_low_confidence(0.16) benign(0.006) TCGA-F7-A624-01 11 61213520 61213520 T C SDHAF2 Missense_Mutation p.Y160H 0.25 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 11 6129910 6129910 A G OR56B4 Missense_Mutation p.H301R 0.30 tolerated(0.1) benign(0.001) TCGA-F7-A624-01 11 61502441 61502441 G A DAGLA Silent p.A365A 0.21 TCGA-F7-A624-01 11 61502471 61502471 T C DAGLA Silent p.D375D 0.09 TCGA-F7-A624-01 11 62291660 62291660 A G AHNAK Missense_Mutation p.I3410T 0.32 probably_damaging(0.987) TCGA-F7-A624-01 11 62362913 62362914 GA - MTA2 Frame_Shift_Del p.P436Lfs*13 0.21 TCGA-F7-A624-01 11 62415151 62415151 C - INTS5 Frame_Shift_Del p.A801Hfs*4 0.22 TCGA-F7-A624-01 11 62490360 62490360 G A HNRNPUL2 Missense_Mutation p.P303S 0.25 tolerated(0.25) benign(0.036) TCGA-F7-A624-01 11 62782126 62782126 T C SLC22A8 Missense_Mutation p.N102S 0.31 tolerated(0.07) benign(0.257) TCGA-F7-A624-01 11 63230986 63230986 T C HRASLS5 Missense_Mutation p.I277V 0.25 tolerated(1) benign(0.001) TCGA-F7-A624-01 11 63326018 63326018 T C HRASLS2 Missense_Mutation p.N78S 0.11 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 11 63581183 63581183 G A C11orf84 Missense_Mutation p.A9T 0.18 deleterious(0.04) possibly_damaging(0.542) TCGA-F7-A624-01 11 63662752 63662752 T C MARK2 Missense_Mutation p.I59T 0.24 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 11 63721975 63721975 A G NAA40 3'UTR 0.28 TCGA-F7-A624-01 11 63986797 63986797 C T FERMT3 Silent p.T287T 0.20 TCGA-F7-A624-01 11 64011583 64011583 A - FKBP2 3'UTR 0.34 TCGA-F7-A624-01 11 64109474 64109474 T C CCDC88B Silent p.A228A 0.20 TCGA-F7-A624-01 11 64109585 64109585 T A CCDC88B Silent p.A265A 0.36 TCGA-F7-A624-01 11 6412943 6412943 G A SMPD1 Silent p.L216L 0.17 TCGA-F7-A624-01 11 6414558 6414558 G A SMPD1 Missense_Mutation p.A402T 0.24 deleterious(0.02) possibly_damaging(0.767) TCGA-F7-A624-01 11 64331799 64331799 C T SLC22A11 Missense_Mutation p.R281W 0.22 deleterious(0) probably_damaging(0.995) TCGA-F7-A624-01 11 64536983 64536983 C T SF1 Missense_Mutation p.G318D 0.07 deleterious(0.03) probably_damaging(0.918) TCGA-F7-A624-01 11 64537511 64537511 C T SF1 Missense_Mutation p.R260H 0.15 deleterious(0) probably_damaging(0.983) TCGA-F7-A624-01 11 64599131 64599131 G A CDC42BPG Silent p.S1050S 0.36 TCGA-F7-A624-01 11 64622229 64622229 A G EHD1 Missense_Mutation p.M394T 0.26 deleterious(0) possibly_damaging(0.754) TCGA-F7-A624-01 11 64897199 64897199 A G SYVN1 Splice_Site p.X532_splice 0.22 TCGA-F7-A624-01 11 65108004 65108004 C A DPF2 Missense_Mutation p.H61N 0.16 deleterious(0) benign(0.403) TCGA-F7-A624-01 11 65349873 65349873 T C EHBP1L1 Missense_Mutation p.V577A 0.35 tolerated(1) benign(0.003) TCGA-F7-A624-01 11 65413733 65413733 C T SIPA1 Silent p.I435I 0.22 TCGA-F7-A624-01 11 65685199 65685199 G A C11orf68 Missense_Mutation p.R205C 0.43 tolerated(0.21) benign(0.005) TCGA-F7-A624-01 11 65810721 65810721 G A GAL3ST3 Missense_Mutation p.R185C 0.29 tolerated(0.05) possibly_damaging(0.744) TCGA-F7-A624-01 11 66107675 66107675 T A BRMS1 Missense_Mutation p.D182V 0.28 deleterious(0.02) possibly_damaging(0.713) TCGA-F7-A624-01 11 66297301 66297301 G A BBS1 Missense_Mutation p.A451T 0.30 tolerated(1) benign(0.002) TCGA-F7-A624-01 11 6632999 6632999 C A TAF10 Missense_Mutation p.G95W 0.26 deleterious(0) probably_damaging(0.957) TCGA-F7-A624-01 11 6636694 6636694 C T TPP1 Silent p.V415V 0.25 TCGA-F7-A624-01 11 66616352 66616352 T C PC 3'UTR 0.25 TCGA-F7-A624-01 11 66986772 66986772 T C KDM2A Silent p.A285A 0.22 TCGA-F7-A624-01 11 67165993 67165993 T C PPP1CA 3'UTR 0.23 TCGA-F7-A624-01 11 67208934 67208934 T C CORO1B Missense_Mutation p.Y169C 0.33 tolerated(0.09) possibly_damaging(0.864) TCGA-F7-A624-01 11 67264864 67264864 G A PITPNM1 Missense_Mutation p.R662W 0.26 deleterious(0) possibly_damaging(0.613) TCGA-F7-A624-01 11 67267648 67267649 - G PITPNM1 Frame_Shift_Ins p.G296Rfs*37 0.26 TCGA-F7-A624-01 11 6790040 6790040 G T OR2AG2 Missense_Mutation p.T50N 0.19 tolerated(0.31) benign(0.043) TCGA-F7-A624-01 11 68029987 68029987 C T C11orf24 Missense_Mutation p.S159N 0.31 tolerated(0.08) unknown(0) TCGA-F7-A624-01 11 68748329 68748329 C T MRGPRD Missense_Mutation p.A43T 0.19 tolerated(0.19) possibly_damaging(0.859) TCGA-F7-A624-01 11 68822243 68822243 T C TPCN2 Missense_Mutation p.Y77H 0.21 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 11 700633 700633 C A TMEM80 Missense_Mutation p.P76H 0.26 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 11 70224303 70224303 T C PPFIA1 Splice_Site p.X1184_splice 0.22 TCGA-F7-A624-01 11 7110662 7110662 G A RBMXL2 Missense_Mutation p.R104H 0.38 tolerated(0.73) benign(0.365) TCGA-F7-A624-01 11 7111242 7111242 G A RBMXL2 Silent p.G297G 0.33 TCGA-F7-A624-01 11 71175157 71175157 C T NADSYN1 Silent p.L126L 0.29 TCGA-F7-A624-01 11 71507071 71507071 T C FAM86C1 Silent p.C90C 0.22 TCGA-F7-A624-01 11 71723445 71723445 A G NUMA1 Splice_Site p.X1550_splice 0.18 TCGA-F7-A624-01 11 72114048 72114048 C T CLPB Nonsense_Mutation p.W168* 0.23 TCGA-F7-A624-01 11 72307674 72307674 G A PDE2A Missense_Mutation p.A151V 0.25 tolerated_low_confidence(1) benign(0) TCGA-F7-A624-01 11 73021624 73021624 C T ARHGEF17 Silent p.G647G 0.28 TCGA-F7-A624-01 11 73101867 73101868 - C RELT Frame_Shift_Ins p.C65Mfs*58 0.08 TCGA-F7-A624-01 11 73366910 73366910 G A PLEKHB1 Silent p.V151V 0.22 TCGA-F7-A624-01 11 73679470 73679470 C G DNAJB13 Missense_Mutation p.N229K 0.21 deleterious(0) benign(0.367) TCGA-F7-A624-01 11 73716870 73716870 T C UCP3 Missense_Mutation p.H149R 0.08 tolerated(0.96) benign(0.001) TCGA-F7-A624-01 11 74324006 74324006 T C POLD3 Missense_Mutation p.F115L 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-F7-A624-01 11 74347277 74347277 C A POLD3 Silent p.R385R 0.35 TCGA-F7-A624-01 11 74914275 74914275 G C SLCO2B1 Intron 0.34 TCGA-F7-A624-01 11 74915461 74915463 TTC - SLCO2B1 In_Frame_Del p.F658del 0.19 TCGA-F7-A624-01 11 75298324 75298324 A G MAP6 Missense_Mutation p.I741T 0.26 tolerated_low_confidence(0.11) benign(0.038) TCGA-F7-A624-01 11 76063224 76063224 A G PRKRIR Missense_Mutation p.Y324H 0.24 tolerated(0.46) benign(0.031) TCGA-F7-A624-01 11 76169245 76169245 C A C11orf30 Missense_Mutation p.S88R 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-F7-A624-01 11 76261120 76261120 A G C11orf30 Missense_Mutation p.Q1300R 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.507) TCGA-F7-A624-01 11 76507404 76507404 T C TSKU Silent p.S248S 0.07 TCGA-F7-A624-01 11 76687369 76687369 A G ACER3 Missense_Mutation p.I102V 0.20 tolerated(1) benign(0.002) TCGA-F7-A624-01 11 77048409 77048409 A G PAK1 Silent p.S392S 0.22 TCGA-F7-A624-01 11 77451921 77451921 C T RSF1 Missense_Mutation p.D145N 0.21 deleterious(0) probably_damaging(0.958) TCGA-F7-A624-01 11 77934490 77934490 G - GAB2 Frame_Shift_Del p.P512Lfs*19 0.29 TCGA-F7-A624-01 11 8123264 8123264 C T TUB 3'UTR 0.40 TCGA-F7-A624-01 11 8161539 8161539 A - RIC3 Frame_Shift_Del p.L109Yfs*46 0.15 TCGA-F7-A624-01 11 8161645 8161645 C T RIC3 Missense_Mutation p.E74K 0.21 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 11 828642 828642 C T EFCAB4A Missense_Mutation p.A12V 0.23 tolerated_low_confidence(0.26) benign(0.015) TCGA-F7-A624-01 11 8479020 8479020 A G STK33 Missense_Mutation p.Y189H 0.26 deleterious(0) probably_damaging(0.934) TCGA-F7-A624-01 11 85701438 85701438 A G PICALM Silent p.P421P 0.29 TCGA-F7-A624-01 11 86662997 86662997 A G FZD4 Silent p.I267I 0.30 TCGA-F7-A624-01 11 86778844 86778844 G A TMEM135 Missense_Mutation p.A84T 0.40 tolerated(0.24) benign(0.001) TCGA-F7-A624-01 11 8752085 8752085 T A ST5 Missense_Mutation p.D251V 0.26 tolerated(0.09) benign(0.373) TCGA-F7-A624-01 11 88033761 88033761 G T CTSC Missense_Mutation p.P232T 0.16 deleterious(0) possibly_damaging(0.788) TCGA-F7-A624-01 11 92085904 92085904 C T FAT3 Missense_Mutation p.T209M 0.28 probably_damaging(1) TCGA-F7-A624-01 11 92714938 92714938 C T MTNR1B Silent p.Y183Y 0.20 TCGA-F7-A624-01 11 93464146 93464146 A G KIAA1731 3'Flank 0.25 TCGA-F7-A624-01 11 94224061 94224061 C T MRE11A Missense_Mutation p.V31I 0.26 tolerated(0.94) benign(0.001) TCGA-F7-A624-01 11 95546694 95546694 T C CEP57 Missense_Mutation p.Y149H 0.21 tolerated(0.19) probably_damaging(0.999) TCGA-F7-A624-01 11 95718778 95718778 T C MAML2 Missense_Mutation p.N791S 0.17 unknown(0) TCGA-F7-A624-01 11 95825905 95825905 T A MAML2 Silent p.V430V 0.07 TCGA-F7-A624-01 12 100709378 100709378 T C SCYL2 Missense_Mutation p.F380L 0.18 tolerated(0.16) benign(0.145) TCGA-F7-A624-01 12 101560442 101560442 A G SLC5A8 Silent p.I452I 0.47 TCGA-F7-A624-01 12 101679591 101679591 C T UTP20 Silent p.N86N 0.21 TCGA-F7-A624-01 12 101750762 101750762 G T UTP20 Missense_Mutation p.A1865S 0.15 deleterious(0) possibly_damaging(0.829) TCGA-F7-A624-01 12 101757406 101757406 A G UTP20 Missense_Mutation p.Q1948R 0.22 tolerated(0.09) benign(0.024) TCGA-F7-A624-01 12 102108338 102108338 T - CHPT1 Frame_Shift_Del p.F162Sfs*23 0.40 TCGA-F7-A624-01 12 102142891 102142891 A G GNPTAB Silent p.F1227F 0.13 TCGA-F7-A624-01 12 102154939 102154939 G A GNPTAB Missense_Mutation p.A1034V 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-F7-A624-01 12 104064492 104064492 G A STAB2 Missense_Mutation p.G760S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 12 104171546 104171546 A G NT5DC3 3'UTR 0.17 TCGA-F7-A624-01 12 104186974 104186974 A G NT5DC3 Silent p.A329A 0.37 TCGA-F7-A624-01 12 104376936 104376936 C T TDG Missense_Mutation p.R213C 0.15 deleterious(0.01) possibly_damaging(0.865) TCGA-F7-A624-01 12 104705131 104705131 T C TXNRD1 Missense_Mutation p.S160P 0.24 tolerated(0.17) benign(0) TCGA-F7-A624-01 12 10531151 10531151 A G KLRK1 Splice_Site p.X143_splice 0.13 TCGA-F7-A624-01 12 105534990 105534990 A G KIAA1033 Missense_Mutation p.K585E 0.05 tolerated(0.25) benign(0.039) TCGA-F7-A624-01 12 106804611 106804611 A T POLR3B Missense_Mutation p.E325V 0.20 tolerated(0.08) benign(0.043) TCGA-F7-A624-01 12 106850954 106850954 A G POLR3B Missense_Mutation p.T778A 0.28 tolerated(0.82) benign(0.003) TCGA-F7-A624-01 12 107155231 107155231 C T RFX4 Missense_Mutation p.T740I 0.23 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-F7-A624-01 12 107372404 107372404 A G MTERFD3 Missense_Mutation p.L30S 0.21 tolerated(0.17) benign(0.007) TCGA-F7-A624-01 12 109196115 109196115 C A SSH1 Missense_Mutation p.E328D 0.40 tolerated(0.06) benign(0.013) TCGA-F7-A624-01 12 10958702 10958702 C A TAS2R8 Missense_Mutation p.R293M 0.38 deleterious(0) probably_damaging(0.995) TCGA-F7-A624-01 12 10959184 10959184 C T TAS2R8 Nonsense_Mutation p.W132* 0.17 TCGA-F7-A624-01 12 10962520 10962520 G A TAS2R9 Missense_Mutation p.A52V 0.33 tolerated(0.06) probably_damaging(0.996) TCGA-F7-A624-01 12 109675039 109675039 C T ACACB Missense_Mutation p.R1506C 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-F7-A624-01 12 109948151 109948151 A G UBE3B Missense_Mutation p.N582D 0.32 tolerated(0.65) benign(0.002) TCGA-F7-A624-01 12 110240845 110240845 G A TRPV4 Silent p.G221G 0.19 TCGA-F7-A624-01 12 110783052 110783052 A G ATP2A2 Splice_Site p.X870_splice 0.20 TCGA-F7-A624-01 12 110872902 110872902 A G ARPC3 3'UTR 0.17 TCGA-F7-A624-01 12 110893704 110893704 G A GPN3 Missense_Mutation p.A200V 0.22 tolerated(0.09) benign(0.053) TCGA-F7-A624-01 12 11091487 11091487 T A TAS2R14 Missense_Mutation p.Y107F 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-F7-A624-01 12 111345339 111345339 A G CCDC63 3'UTR 0.21 TCGA-F7-A624-01 12 11138911 11138911 C T TAS2R50 Nonsense_Mutation p.W183* 0.21 TCGA-F7-A624-01 12 111890536 111890536 T A ATXN2 3'UTR 0.13 TCGA-F7-A624-01 12 112182670 112182670 T A ACAD10 Missense_Mutation p.H677Q 0.27 tolerated(0.41) benign(0.017) TCGA-F7-A624-01 12 112194271 112194271 C T ACAD10 Silent p.R1089R 0.26 TCGA-F7-A624-01 12 112608228 112608228 G A HECTD4 Silent p.T3841T 0.16 TCGA-F7-A624-01 12 112622580 112622580 C T HECTD4 Missense_Mutation p.R3251H 0.20 probably_damaging(0.998) TCGA-F7-A624-01 12 112665919 112665919 A G HECTD4 Silent p.V2130V 0.15 TCGA-F7-A624-01 12 112843724 112843724 T C RPL6 Missense_Mutation p.Y216C 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-F7-A624-01 12 113496126 113496126 C T DTX1 Silent p.T43T 0.14 TCGA-F7-A624-01 12 113534672 113534672 C T DTX1 Silent p.D597D 0.19 TCGA-F7-A624-01 12 113711398 113711398 C T TPCN1 Silent p.S361S 0.21 TCGA-F7-A624-01 12 114841573 114841573 G A TBX5 Missense_Mutation p.A44V 0.18 tolerated(0.11) benign(0.118) TCGA-F7-A624-01 12 117612582 117612582 A G FBXO21 Missense_Mutation p.Y205H 0.28 deleterious(0.02) benign(0.372) TCGA-F7-A624-01 12 117660540 117660540 G A NOS1 Missense_Mutation p.R1353W 0.39 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 12 117977605 117977605 G - KSR2 Frame_Shift_Del p.L536Sfs*61 0.46 TCGA-F7-A624-01 12 118198900 118198900 A G KSR2 Missense_Mutation p.L301S 0.07 deleterious(0) possibly_damaging(0.88) TCGA-F7-A624-01 12 118199073 118199073 C T KSR2 Silent p.S243S 0.31 TCGA-F7-A624-01 12 118841279 118841279 G A SUDS3 Missense_Mutation p.E254K 0.11 deleterious(0.01) benign(0.207) TCGA-F7-A624-01 12 119594436 119594436 C T SRRM4 Missense_Mutation p.R557W 0.37 deleterious_low_confidence(0) unknown(0) TCGA-F7-A624-01 12 120112203 120112203 A G PRKAB1 Missense_Mutation p.D159G 0.17 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 12 120112225 120112225 A G PRKAB1 Silent p.L166L 0.15 TCGA-F7-A624-01 12 120582208 120582208 G A GCN1L1 Silent p.R1799R 0.29 TCGA-F7-A624-01 12 120585045 120585045 C T GCN1L1 Silent p.T1586T 0.36 TCGA-F7-A624-01 12 120585076 120585076 G A GCN1L1 Missense_Mutation p.A1576V 0.22 probably_damaging(0.997) TCGA-F7-A624-01 12 120652959 120652959 C T PXN Missense_Mutation p.A365T 0.36 tolerated(0.52) benign(0.068) TCGA-F7-A624-01 12 120750423 120750423 T C SIRT4 Missense_Mutation p.V221A 0.07 tolerated(0.73) benign(0) TCGA-F7-A624-01 12 121177257 121177257 C T ACADS 3'UTR 0.45 TCGA-F7-A624-01 12 121659765 121659765 A G P2RX4 Missense_Mutation p.Q127R 0.37 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 12 121986850 121986850 C T KDM2B Silent p.Q205Q 0.08 TCGA-F7-A624-01 12 122018896 122018896 C T KDM2B 5'Flank 0.13 TCGA-F7-A624-01 12 122277894 122277895 - T HPD Frame_Shift_Ins p.P339Tfs*42 0.13 TCGA-F7-A624-01 12 122692969 122692969 G A DIABLO Missense_Mutation p.R227W 0.44 deleterious(0.02) possibly_damaging(0.567) TCGA-F7-A624-01 12 122735613 122735613 A G VPS33A Missense_Mutation p.Y173H 0.36 tolerated(0.21) benign(0.22) TCGA-F7-A624-01 12 123089166 123089166 A G KNTC1 Silent p.L1719L 0.22 TCGA-F7-A624-01 12 123089855 123089855 A G KNTC1 Missense_Mutation p.I1797V 0.25 tolerated(0.12) probably_damaging(0.956) TCGA-F7-A624-01 12 123343659 123343659 G C HIP1R Missense_Mutation p.G737A 0.20 tolerated(0.46) benign(0.044) TCGA-F7-A624-01 12 123467251 123467251 C T ARL6IP4 3'UTR 0.12 TCGA-F7-A624-01 12 123470804 123470804 G A PITPNM2 Missense_Mutation p.R1274C 0.43 deleterious(0.03) possibly_damaging(0.891) TCGA-F7-A624-01 12 123705975 123705975 T C MPHOSPH9 Silent p.E120E 0.10 TCGA-F7-A624-01 12 124191394 124191394 A G TCTN2 Missense_Mutation p.T631A 0.15 deleterious(0) possibly_damaging(0.521) TCGA-F7-A624-01 12 124229156 124229156 T - ATP6V0A2 Frame_Shift_Del p.F448Lfs*9 0.24 TCGA-F7-A624-01 12 124265628 124265628 T - DNAH10 Frame_Shift_Del p.L149Cfs*40 0.21 TCGA-F7-A624-01 12 124274577 124274577 C - DNAH10 Frame_Shift_Del p.M516Wfs*4 0.16 TCGA-F7-A624-01 12 124285853 124285853 T C DNAH10 Silent p.L712L 0.18 TCGA-F7-A624-01 12 124311303 124311303 G A DNAH10 Missense_Mutation p.E1299K 0.15 benign(0.394) TCGA-F7-A624-01 12 124330404 124330404 T C DNAH10 Missense_Mutation p.F1755S 0.18 probably_damaging(0.988) TCGA-F7-A624-01 12 124415103 124415103 A - DNAH10 Frame_Shift_Del p.K4139Rfs*69 0.10 TCGA-F7-A624-01 12 124427915 124427915 G A CCDC92 Missense_Mutation p.R54W 0.20 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 12 124820112 124820112 A G NCOR2 Missense_Mutation p.L2061P 0.21 probably_damaging(0.986) TCGA-F7-A624-01 12 124856824 124856824 G A NCOR2 Silent p.L851L 0.17 TCGA-F7-A624-01 12 124911256 124911256 C T NCOR2 Missense_Mutation p.G414R 0.36 unknown(0) TCGA-F7-A624-01 12 125397539 125397539 T C UBC Missense_Mutation p.D260G 0.13 deleterious(0) possibly_damaging(0.759) TCGA-F7-A624-01 12 125434989 125434989 G A DHX37 Missense_Mutation p.R1031W 0.13 deleterious(0) possibly_damaging(0.772) TCGA-F7-A624-01 12 129467741 129467741 G A GLT1D1 3'UTR 0.17 TCGA-F7-A624-01 12 129559268 129559268 T C TMEM132D Missense_Mutation p.M818V 0.18 tolerated(0.16) benign(0) TCGA-F7-A624-01 12 130647821 130647821 C T FZD10 Nonsense_Mutation p.Q112* 0.14 TCGA-F7-A624-01 12 130648984 130648984 C T FZD10 Silent p.P499P 0.35 TCGA-F7-A624-01 12 130827178 130827178 C T PIWIL1 Silent p.R14R 0.21 TCGA-F7-A624-01 12 131593276 131593276 G A GPR133 Missense_Mutation p.C632Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 12 13243713 13243713 G T GSG1 Missense_Mutation p.L30I 0.17 tolerated(0.1) benign(0.113) TCGA-F7-A624-01 12 133201181 133201181 C T POLE 3'UTR 0.29 TCGA-F7-A624-01 12 133245023 133245024 - G POLE Frame_Shift_Ins p.F699Vfs*11 0.35 TCGA-F7-A624-01 12 133351635 133351635 A T GOLGA3 Intron 0.31 TCGA-F7-A624-01 12 133438054 133438054 T A CHFR Silent p.G262G 0.19 TCGA-F7-A624-01 12 133448979 133448979 T C CHFR Missense_Mutation p.T79A 0.06 deleterious(0.01) benign(0.064) TCGA-F7-A624-01 12 13367596 13367596 G A EMP1 Missense_Mutation p.V149I 0.37 tolerated(1) benign(0.009) TCGA-F7-A624-01 12 133779106 133779106 C T ZNF268 Silent p.C278C 0.28 TCGA-F7-A624-01 12 13724735 13724735 T C GRIN2B Intron 0.10 TCGA-F7-A624-01 12 14781658 14781658 A G GUCY2C Missense_Mutation p.V724A 0.25 deleterious(0) benign(0.4) TCGA-F7-A624-01 12 15262345 15262345 T C RERG Missense_Mutation p.N100S 0.20 tolerated(0.75) benign(0.001) TCGA-F7-A624-01 12 1741947 1741947 C T WNT5B Silent p.H68H 0.17 TCGA-F7-A624-01 12 18800969 18800969 C T PIK3C2G 3'UTR 0.13 TCGA-F7-A624-01 12 1895283 1895283 G A ADIPOR2 3'UTR 0.25 TCGA-F7-A624-01 12 2019090 2019090 T C CACNA2D4 Silent p.E156E 0.11 TCGA-F7-A624-01 12 20854395 20854395 T C SLCO1C1 Splice_Site p.X91_splice 0.17 TCGA-F7-A624-01 12 20885884 20885884 G - SLCO1C1 Frame_Shift_Del p.I412* 0.31 TCGA-F7-A624-01 12 21207556 21207556 C T SLCO1B7 Silent p.S509S 0.35 TCGA-F7-A624-01 12 21242847 21242847 C G SLCO1B7 Missense_Mutation p.A577G 0.14 tolerated(0.07) benign(0.138) TCGA-F7-A624-01 12 21392130 21392130 A - SLCO1B1 3'UTR 0.09 TCGA-F7-A624-01 12 21623985 21623986 - TT RECQL Frame_Shift_Ins p.I572Kfs*2 0.14 TCGA-F7-A624-01 12 21721940 21721940 T C GYS2 Missense_Mutation p.N228D 0.26 tolerated(1) benign(0.006) TCGA-F7-A624-01 12 22013987 22013987 T C ABCC9 Missense_Mutation p.Y781C 0.22 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 12 22068689 22068689 A G ABCC9 Silent p.I243I 0.18 TCGA-F7-A624-01 12 22078939 22078939 T C ABCC9 Missense_Mutation p.T115A 0.05 tolerated(1) benign(0.001) TCGA-F7-A624-01 12 22218161 22218161 T C CMAS Silent p.C407C 0.22 TCGA-F7-A624-01 12 22625244 22625244 T C C2CD5 Missense_Mutation p.I715M 0.33 tolerated(0.35) benign(0.263) TCGA-F7-A624-01 12 27126806 27126806 C T TM7SF3 3'UTR 0.21 TCGA-F7-A624-01 12 27143527 27143527 C T TM7SF3 Missense_Mutation p.V242I 0.36 tolerated(0.09) benign(0.015) TCGA-F7-A624-01 12 27829385 27829385 C T PPFIBP1 Missense_Mutation p.P496S 0.42 tolerated(0.4) benign(0.04) TCGA-F7-A624-01 12 27844717 27844717 G T PPFIBP1 Missense_Mutation p.L913F 0.14 deleterious(0) probably_damaging(0.982) TCGA-F7-A624-01 12 27845536 27845536 G A PPFIBP1 Missense_Mutation p.E966K 0.11 deleterious(0.05) probably_damaging(0.983) TCGA-F7-A624-01 12 27845553 27845553 G C PPFIBP1 Missense_Mutation p.Q971H 0.11 deleterious(0) probably_damaging(0.991) TCGA-F7-A624-01 12 27845798 27845798 G A PPFIBP1 Missense_Mutation p.E1007K 0.19 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-F7-A624-01 12 2786430 2786430 T C CACNA1C Intron 0.19 TCGA-F7-A624-01 12 27908288 27908288 A - MRPS35 Frame_Shift_Del p.K294Sfs*23 0.18 TCGA-F7-A624-01 12 27950995 27950995 T C KLHL42 Missense_Mutation p.Y472H 0.23 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 12 2797785 2797785 G A CACNA1C Missense_Mutation p.S2034N 0.17 tolerated_low_confidence(0.05) possibly_damaging(0.572) TCGA-F7-A624-01 12 28122739 28122739 T C PTHLH Intron 0.18 TCGA-F7-A624-01 12 29649501 29649501 T C OVCH1 Silent p.G57G 0.23 TCGA-F7-A624-01 12 31255934 31255934 G A DDX11 Missense_Mutation p.A813T 0.16 tolerated(0.24) benign(0.122) TCGA-F7-A624-01 12 31600487 31600487 T A DENND5B Missense_Mutation p.T616S 0.15 tolerated(0.28) benign(0.009) TCGA-F7-A624-01 12 32487496 32487496 A - BICD1 Frame_Shift_Del p.A718Qfs*3 0.22 TCGA-F7-A624-01 12 32897828 32897828 T C DNM1L 3'Flank 0.19 TCGA-F7-A624-01 12 32900275 32900275 C T YARS2 Missense_Mutation p.G433R 0.08 deleterious(0) possibly_damaging(0.755) TCGA-F7-A624-01 12 3702332 3702332 A G PRMT8 Missense_Mutation p.D390G 0.47 tolerated(0.09) benign(0) TCGA-F7-A624-01 12 39735874 39735874 T C KIF21A Missense_Mutation p.K589E 0.14 tolerated(0.82) benign(0.323) TCGA-F7-A624-01 12 39745734 39745734 G T KIF21A Missense_Mutation p.N506K 0.16 deleterious(0.02) benign(0.184) TCGA-F7-A624-01 12 39760881 39760881 A G KIF21A Missense_Mutation p.I229T 0.16 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 12 40012818 40012818 A G ABCD2 Silent p.D200D 0.12 TCGA-F7-A624-01 12 40153972 40153972 T - SLC2A13 Frame_Shift_Del p.K601Nfs*2 0.26 TCGA-F7-A624-01 12 40345097 40345097 T C SLC2A13 Silent p.L332L 0.11 TCGA-F7-A624-01 12 40629496 40629496 T C LRRK2 Missense_Mutation p.L139S 0.14 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 12 40692915 40692915 A T LRRK2 Nonsense_Mutation p.K1118* 0.19 TCGA-F7-A624-01 12 41330678 41330678 A G CNTN1 Missense_Mutation p.T361A 0.04 tolerated(0.47) benign(0.038) TCGA-F7-A624-01 12 41365259 41365259 A - CNTN1 Intron 0.32 TCGA-F7-A624-01 12 41957354 41957354 A G PDZRN4 Missense_Mutation p.N457S 0.07 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 12 4398026 4398026 A G CCND2 Missense_Mutation p.Y197C 0.20 tolerated(0.1) probably_damaging(0.976) TCGA-F7-A624-01 12 4398027 4398027 C G CCND2 Nonsense_Mutation p.Y197* 0.19 TCGA-F7-A624-01 12 44180497 44180497 G A IRAK4 Silent p.L454L 0.20 TCGA-F7-A624-01 12 459895 459895 G A KDM5A Silent p.S400S 0.14 TCGA-F7-A624-01 12 46316747 46316747 G A SCAF11 Missense_Mutation p.A1366V 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-F7-A624-01 12 46328280 46328280 A G SCAF11 Silent p.L158L 0.23 TCGA-F7-A624-01 12 46759025 46759025 A G SLC38A2 Intron 0.40 TCGA-F7-A624-01 12 46764402 46764402 A G SLC38A2 Silent p.G69G 0.06 TCGA-F7-A624-01 12 47629745 47629745 G A PCED1B Missense_Mutation p.R300H 0.17 tolerated(0.54) benign(0.019) TCGA-F7-A624-01 12 48369218 48369218 A G COL2A1 Silent p.D1256D 0.08 TCGA-F7-A624-01 12 48543375 48543375 G T ASB8 Missense_Mutation p.A214D 0.20 deleterious(0) probably_damaging(0.981) TCGA-F7-A624-01 12 48737414 48737414 G A ZNF641 Missense_Mutation p.P220L 0.48 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 12 48921859 48921859 G A OR8S1 Silent p.L351L 0.13 TCGA-F7-A624-01 12 49415624 49415624 T C KMT2D Missense_Mutation p.D5518G 0.19 unknown(0) TCGA-F7-A624-01 12 49425038 49425038 G A KMT2D Nonsense_Mutation p.R4484* 0.42 TCGA-F7-A624-01 12 49432223 49432223 C T KMT2D Silent p.E2972E 0.22 TCGA-F7-A624-01 12 49440430 49440431 - G KMT2D Frame_Shift_Ins p.L1461Tfs*30 0.17 TCGA-F7-A624-01 12 49485061 49485061 A G DHH Missense_Mutation p.S139P 0.27 deleterious(0.02) probably_damaging(1) TCGA-F7-A624-01 12 49689166 49689166 T C PRPH Silent p.R61R 0.20 TCGA-F7-A624-01 12 49938030 49938030 T C KCNH3 Missense_Mutation p.Y352H 0.21 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 12 49952423 49952423 T C MCRS1 3'Flank 0.21 TCGA-F7-A624-01 12 49993649 49993649 G A FAM186B Missense_Mutation p.P592S 0.23 tolerated(0.19) benign(0.084) TCGA-F7-A624-01 12 50037668 50037668 C A PRPF40B Missense_Mutation p.P823T 0.16 tolerated_low_confidence(0.06) probably_damaging(0.954) TCGA-F7-A624-01 12 50513902 50513902 G - COX14 Frame_Shift_Del p.Y28Tfs*83 0.28 TCGA-F7-A624-01 12 51237699 51237699 G A TMPRSS12 Missense_Mutation p.A88T 0.33 deleterious(0.05) benign(0.048) TCGA-F7-A624-01 12 51390601 51390601 T G SLC11A2 Missense_Mutation p.K306T 0.07 deleterious(0) probably_damaging(0.948) TCGA-F7-A624-01 12 51585438 51585438 C T POU6F1 Silent p.Q167Q 0.16 TCGA-F7-A624-01 12 51879581 51879581 T C SLC4A8 Missense_Mutation p.M728T 0.13 tolerated(0.66) benign(0.001) TCGA-F7-A624-01 12 52284371 52284371 C T ANKRD33 Missense_Mutation p.A214V 0.26 deleterious(0.02) possibly_damaging(0.69) TCGA-F7-A624-01 12 52448248 52448249 - C NR4A1 Frame_Shift_Ins p.T61Hfs*18 0.19 TCGA-F7-A624-01 12 52794339 52794339 A T KRT82 Missense_Mutation p.I250N 0.24 deleterious(0.01) benign(0.018) TCGA-F7-A624-01 12 52799891 52799891 C - KRT82 Frame_Shift_Del p.C58Afs*10 0.23 TCGA-F7-A624-01 12 52824429 52824429 T C KRT75 Missense_Mutation p.N311D 0.22 deleterious(0) probably_damaging(0.941) TCGA-F7-A624-01 12 52825376 52825376 A G KRT75 Missense_Mutation p.V274A 0.18 tolerated(0.21) benign(0.06) TCGA-F7-A624-01 12 52881710 52881710 A G KRT6A Missense_Mutation p.Y497H 0.20 tolerated(0.36) benign(0.007) TCGA-F7-A624-01 12 52962046 52962046 A G KRT74 Missense_Mutation p.M421T 0.18 deleterious(0.01) possibly_damaging(0.833) TCGA-F7-A624-01 12 52966367 52966367 T G KRT74 Missense_Mutation p.N186H 0.19 deleterious(0.02) benign(0.25) TCGA-F7-A624-01 12 53097133 53097133 C T KRT77 Missense_Mutation p.G29D 0.21 deleterious(0.04) unknown(0) TCGA-F7-A624-01 12 53189550 53189550 A G KRT3 Missense_Mutation p.Y93H 0.05 tolerated(0.53) unknown(0) TCGA-F7-A624-01 12 54063664 54063664 C T ATP5G2 Silent p.L93L 0.42 TCGA-F7-A624-01 12 54348916 54348916 A G HOXC12 Missense_Mutation p.Y68C 0.16 deleterious(0.03) probably_damaging(0.99) TCGA-F7-A624-01 12 54394074 54394074 T C HOXC9 Silent p.H34H 0.15 TCGA-F7-A624-01 12 54448943 54448943 C T HOXC4 Missense_Mutation p.A250V 0.38 tolerated(0.3) benign(0.012) TCGA-F7-A624-01 12 54677727 54677727 T A HNRNPA1 Missense_Mutation p.Y347N 0.35 deleterious(0.02) benign(0.035) TCGA-F7-A624-01 12 547673 547673 T C CCDC77 Silent p.L332L 0.16 TCGA-F7-A624-01 12 55421134 55421134 G A NEUROD4 Missense_Mutation p.R304H 0.31 deleterious(0.01) benign(0.013) TCGA-F7-A624-01 12 55421279 55421279 T C NEUROD4 3'UTR 0.20 TCGA-F7-A624-01 12 55795221 55795222 - A OR6C65 Frame_Shift_Ins p.I306Nfs*? 0.32 TCGA-F7-A624-01 12 55846907 55846907 A G OR6C2 Missense_Mutation p.K304E 0.17 deleterious_low_confidence(0.02) benign(0.143) TCGA-F7-A624-01 12 56112959 56112959 G C BLOC1S1 Missense_Mutation p.Q101H 0.23 deleterious(0.02) possibly_damaging(0.63) TCGA-F7-A624-01 12 56334470 56334470 C T DGKA Silent p.H327H 0.19 TCGA-F7-A624-01 12 56563405 56563405 C - SMARCC2 Frame_Shift_Del p.E844Kfs*28 0.18 TCGA-F7-A624-01 12 56629106 56629106 C T SLC39A5 Missense_Mutation p.P267L 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 12 56716461 56716461 G A PAN2 Missense_Mutation p.R863C 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-F7-A624-01 12 56722344 56722344 T C PAN2 Missense_Mutation p.I122V 0.31 tolerated(0.18) benign(0.011) TCGA-F7-A624-01 12 57037293 57037293 C T ATP5B Missense_Mutation p.G229D 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-F7-A624-01 12 57389733 57389733 A G GPR182 Missense_Mutation p.Q247R 0.23 tolerated(1) benign(0.001) TCGA-F7-A624-01 12 57397891 57397891 T C ZBTB39 Missense_Mutation p.T271A 0.22 tolerated(0.62) benign(0) TCGA-F7-A624-01 12 57920551 57920551 G A MBD6 Silent p.L541L 0.23 TCGA-F7-A624-01 12 58125404 58125404 C T AGAP2 Missense_Mutation p.E659K 0.22 tolerated(0.09) possibly_damaging(0.885) TCGA-F7-A624-01 12 60173352 60173352 G C SLC16A7 Missense_Mutation p.Q443H 0.38 tolerated(0.11) benign(0.195) TCGA-F7-A624-01 12 6030501 6030501 G T ANO2 Missense_Mutation p.P76H 0.17 tolerated_low_confidence(0.07) benign(0.413) TCGA-F7-A624-01 12 6167200 6167200 A G VWF Missense_Mutation p.V515A 0.14 tolerated(0.53) benign(0.09) TCGA-F7-A624-01 12 62148730 62148730 C T FAM19A2 Missense_Mutation p.R61Q 0.26 tolerated(0.08) probably_damaging(0.997) TCGA-F7-A624-01 12 62786084 62786084 A G USP15 Silent p.K779K 0.14 TCGA-F7-A624-01 12 64061862 64061862 G C DPY19L2 Missense_Mutation p.F104L 0.31 tolerated(0.2) benign(0.001) TCGA-F7-A624-01 12 6427516 6427516 T C PLEKHG6 Missense_Mutation p.V402A 0.15 tolerated(0.31) benign(0.118) TCGA-F7-A624-01 12 6436589 6436589 C T PLEKHG6 Missense_Mutation p.R614W 0.18 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-F7-A624-01 12 6439184 6439184 A G TNFRSF1A Missense_Mutation p.F273L 0.12 tolerated(0.39) benign(0.002) TCGA-F7-A624-01 12 64458997 64458997 G C SRGAP1 Missense_Mutation p.E375Q 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-F7-A624-01 12 64891804 64891804 A G TBK1 Missense_Mutation p.N708S 0.13 deleterious(0) probably_damaging(0.99) TCGA-F7-A624-01 12 6497628 6497630 CTC - LTBR In_Frame_Del p.S245del 0.40 TCGA-F7-A624-01 12 667687 667687 T A B4GALNT3 Missense_Mutation p.I874N 0.18 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 12 6680033 6680033 A G CHD4 Splice_Site p.X1907_splice 0.20 TCGA-F7-A624-01 12 68051507 68051507 C T DYRK2 Missense_Mutation p.R274W 0.15 deleterious(0) probably_damaging(0.991) TCGA-F7-A624-01 12 6979496 6979496 T C TPI1 Silent p.G270G 0.28 TCGA-F7-A624-01 12 70049492 70049492 G A BEST3 Missense_Mutation p.A401V 0.17 tolerated(1) benign(0.001) TCGA-F7-A624-01 12 7044749 7044749 A G ATN1 Missense_Mutation p.S107G 0.20 probably_damaging(0.992) TCGA-F7-A624-01 12 7046509 7046509 A G ATN1 Silent p.G693G 0.36 TCGA-F7-A624-01 12 70723272 70723272 G A CNOT2 Missense_Mutation p.G103D 0.17 deleterious_low_confidence(0) benign(0.117) TCGA-F7-A624-01 12 70724105 70724105 A G CNOT2 Missense_Mutation p.H142R 0.18 tolerated(0.08) benign(0.081) TCGA-F7-A624-01 12 70760631 70760631 G T KCNMB4 Missense_Mutation p.W39C 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-F7-A624-01 12 7288935 7288935 C T CLSTN3 Silent p.A292A 0.19 TCGA-F7-A624-01 12 76741421 76741421 G C BBS10 Missense_Mutation p.T115S 0.16 tolerated(0.34) benign(0.045) TCGA-F7-A624-01 12 78362385 78362385 T C NAV3 Missense_Mutation p.Y192H 0.06 tolerated(0.25) possibly_damaging(0.82) TCGA-F7-A624-01 12 80729848 80729848 C T OTOGL Missense_Mutation p.P1501S 0.10 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 12 81205381 81205381 T A LIN7A Missense_Mutation p.T189S 0.09 tolerated(0.07) possibly_damaging(0.636) TCGA-F7-A624-01 12 8201971 8201971 T C FOXJ2 Silent p.S447S 0.21 TCGA-F7-A624-01 12 82792639 82792639 A G METTL25 Silent p.K199K 0.16 TCGA-F7-A624-01 12 83358812 83358812 T C TMTC2 Silent p.L536L 0.25 TCGA-F7-A624-01 12 83359569 83359569 T G TMTC2 Intron 0.26 TCGA-F7-A624-01 12 86374168 86374168 T - MGAT4C Frame_Shift_Del p.G113Efs*20 0.13 TCGA-F7-A624-01 12 8807057 8807057 T A MFAP5 Missense_Mutation p.I65F 0.14 deleterious(0.01) possibly_damaging(0.719) TCGA-F7-A624-01 12 88379796 88379796 A G C12orf50 Silent p.S319S 0.20 TCGA-F7-A624-01 12 8866471 8866471 T C RIMKLB Silent p.S3S 0.17 TCGA-F7-A624-01 12 88910239 88910239 T C KITLG Missense_Mutation p.E131G 0.25 deleterious(0) possibly_damaging(0.56) TCGA-F7-A624-01 12 8975929 8975929 A G A2ML1 Missense_Mutation p.K72E 0.17 tolerated(0.19) benign(0.005) TCGA-F7-A624-01 12 90028906 90028906 T C ATP2B1 Missense_Mutation p.K177E 0.20 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 12 9098992 9098992 A G M6PR Silent p.P3P 0.16 TCGA-F7-A624-01 12 92539207 92539207 T C BTG1 Silent p.R35R 0.16 TCGA-F7-A624-01 12 9254095 9254095 A C A2M Missense_Mutation p.I481S 0.16 deleterious(0.01) benign(0.1) TCGA-F7-A624-01 12 94975823 94975823 C T TMCC3 Silent p.G190G 0.21 TCGA-F7-A624-01 12 95486519 95486519 A G FGD6 Missense_Mutation p.F1235L 0.18 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 12 95911849 95911849 A G USP44 3'UTR 0.19 TCGA-F7-A624-01 12 96394781 96394781 A G LTA4H Silent p.L608L 0.13 TCGA-F7-A624-01 12 96640943 96640943 T C ELK3 Missense_Mutation p.S145P 0.10 deleterious(0.02) benign(0.016) TCGA-F7-A624-01 12 97084908 97084908 T C C12orf55 Silent p.G2028G 0.17 TCGA-F7-A624-01 12 99077025 99077025 C A APAF1 Silent p.A717A 0.17 TCGA-F7-A624-01 12 994688 994688 C A WNK1 Missense_Mutation p.P1573Q 0.37 tolerated_low_confidence(0.06) benign(0.271) TCGA-F7-A624-01 12 99640329 99640329 T A ANKS1B Missense_Mutation p.R690S 0.20 tolerated(0.3) benign(0.001) TCGA-F7-A624-01 13 110434506 110434506 C T IRS2 Missense_Mutation p.V1299I 0.35 tolerated_low_confidence(0.32) benign(0) TCGA-F7-A624-01 13 110436629 110436629 G A IRS2 Missense_Mutation p.S591F 0.24 deleterious(0) probably_damaging(0.979) TCGA-F7-A624-01 13 110436745 110436745 A G IRS2 Silent p.C552C 0.24 TCGA-F7-A624-01 13 111371616 111371616 T C ING1 Silent p.S202S 0.28 TCGA-F7-A624-01 13 111995122 111995122 A G TEX29 Missense_Mutation p.K87E 0.09 tolerated(0.09) benign(0.005) TCGA-F7-A624-01 13 113729502 113729502 C T MCF2L Missense_Mutation p.T436M 0.12 deleterious(0.05) benign(0.017) TCGA-F7-A624-01 13 113975727 113975727 T C LAMP1 Silent p.S295S 0.25 TCGA-F7-A624-01 13 113980283 113980283 A G GRTP1 Missense_Mutation p.L229P 0.23 tolerated(0.06) benign(0.013) TCGA-F7-A624-01 13 19753567 19753567 T A TUBA3C Missense_Mutation p.D47V 0.25 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-F7-A624-01 13 20567602 20567602 G A ZMYM2 Silent p.G130G 0.19 TCGA-F7-A624-01 13 21006355 21006355 G A CRYL1 Silent p.H173H 0.30 TCGA-F7-A624-01 13 21555623 21555623 C T LATS2 Missense_Mutation p.E883K 0.15 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 13 23932595 23932595 G A SACS Silent p.N161N 0.19 TCGA-F7-A624-01 13 24444256 24444256 T C MIPEP Missense_Mutation p.K228E 0.07 tolerated(0.82) benign(0.003) TCGA-F7-A624-01 13 25073511 25073511 A G PARP4 Silent p.F135F 0.27 TCGA-F7-A624-01 13 25376682 25376682 A T RNF17 Missense_Mutation p.D641V 0.09 deleterious(0) benign(0.329) TCGA-F7-A624-01 13 25457263 25457263 T - CENPJ 3'UTR 0.23 TCGA-F7-A624-01 13 28127463 28127463 C G LNX2 Missense_Mutation p.E554Q 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-F7-A624-01 13 28155586 28155586 C T LNX2 Silent p.P85P 0.25 TCGA-F7-A624-01 13 28368040 28368040 G A GSX1 Silent p.P250P 0.32 TCGA-F7-A624-01 13 28601232 28601232 T C FLT3 Missense_Mutation p.N734D 0.27 deleterious(0.01) benign(0.426) TCGA-F7-A624-01 13 28877396 28877396 A G FLT1 Missense_Mutation p.Y1309H 0.10 tolerated(0.49) benign(0.003) TCGA-F7-A624-01 13 29041235 29041235 C T FLT1 Missense_Mutation p.E65K 0.08 tolerated(0.62) benign(0.012) TCGA-F7-A624-01 13 32527481 32527481 G A EEF1DP3 RNA 0.17 TCGA-F7-A624-01 13 32698424 32698424 G A FRY Missense_Mutation p.D156N 0.11 deleterious(0.01) benign(0.051) TCGA-F7-A624-01 13 33017615 33017615 T C N4BP2L2 Silent p.E353E 0.15 TCGA-F7-A624-01 13 33590977 33590977 C G KL Missense_Mutation p.F133L 0.14 tolerated(0.63) benign(0.007) TCGA-F7-A624-01 13 34399981 34399982 - A RFC3 Frame_Shift_Ins p.S118Ifs*5 0.21 TCGA-F7-A624-01 13 36909285 36909285 A G SPG20 Missense_Mutation p.V228A 0.22 deleterious(0) probably_damaging(0.961) TCGA-F7-A624-01 13 37012300 37012300 A C CCNA1 Missense_Mutation p.E214A 0.24 deleterious(0) probably_damaging(0.936) TCGA-F7-A624-01 13 37269141 37269141 C A SERTM1 5'UTR 0.38 TCGA-F7-A624-01 13 37679168 37679168 T C CSNK1A1L Missense_Mutation p.M76V 0.22 tolerated_low_confidence(0.57) benign(0.001) TCGA-F7-A624-01 13 39422641 39422641 A G FREM2 Silent p.A2071A 0.09 TCGA-F7-A624-01 13 39917958 39917958 T C LHFP 3'UTR 0.24 TCGA-F7-A624-01 13 41941733 41941733 G C NAA16 Missense_Mutation p.L566F 0.24 deleterious(0) probably_damaging(0.993) TCGA-F7-A624-01 13 42264310 42264310 A G VWA8 Missense_Mutation p.V1323A 0.24 tolerated(0.4) benign(0.001) TCGA-F7-A624-01 13 42440146 42440146 A G VWA8 Silent p.S413S 0.05 TCGA-F7-A624-01 13 42457576 42457576 A G VWA8 Missense_Mutation p.Y343H 0.19 deleterious(0) probably_damaging(0.967) TCGA-F7-A624-01 13 43358251 43358251 A T FAM216B Missense_Mutation p.Q16H 0.27 tolerated(0.11) benign(0.006) TCGA-F7-A624-01 13 45710869 45710869 T C GTF2F2 Missense_Mutation p.V23A 0.20 deleterious(0) probably_damaging(0.939) TCGA-F7-A624-01 13 45768564 45768564 G C KCTD4 Missense_Mutation p.Q47E 0.25 tolerated(0.19) benign(0.004) TCGA-F7-A624-01 13 47466612 47466612 C T HTR2A Missense_Mutation p.A176T 0.26 deleterious(0) probably_damaging(0.987) TCGA-F7-A624-01 13 49684522 49684522 A G FNDC3A Intron 0.24 TCGA-F7-A624-01 13 49712931 49712931 T C FNDC3A Missense_Mutation p.V270A 0.14 tolerated(0.49) benign(0.001) TCGA-F7-A624-01 13 49772646 49772646 A G FNDC3A Missense_Mutation p.T975A 0.19 tolerated(0.17) benign(0.001) TCGA-F7-A624-01 13 49775950 49775950 A G FNDC3A Missense_Mutation p.Y1001C 0.09 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 13 50035241 50035241 C T SETDB2 Nonsense_Mutation p.Q51* 0.21 TCGA-F7-A624-01 13 51287349 51287349 T C DLEU7 3'UTR 0.20 TCGA-F7-A624-01 13 53049483 53049483 A G CKAP2 3'UTR 0.38 TCGA-F7-A624-01 13 53286848 53286848 T C LECT1 Intron 0.22 TCGA-F7-A624-01 13 61141781 61141781 A G TDRD3 3'UTR 0.13 TCGA-F7-A624-01 13 67801644 67801644 C T PCDH9 Missense_Mutation p.G310E 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 13 72440846 72440846 G C DACH1 Missense_Mutation p.S21C 0.30 unknown(0) TCGA-F7-A624-01 13 73318699 73318699 G A BORA Missense_Mutation p.G171S 0.20 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 13 73346903 73346903 A G DIS3 Silent p.D438D 0.25 TCGA-F7-A624-01 13 77581451 77581451 T C FBXL3 Silent p.S372S 0.20 TCGA-F7-A624-01 13 84453776 84453776 C A SLITRK1 Nonsense_Mutation p.G623* 0.18 TCGA-F7-A624-01 13 88329395 88329395 C T SLITRK5 Silent p.G584G 0.22 TCGA-F7-A624-01 13 94680114 94680114 G T GPC6 Missense_Mutation p.Q281H 0.29 deleterious(0.02) probably_damaging(0.971) TCGA-F7-A624-01 13 96293612 96293612 T C DZIP1 Silent p.K178K 0.08 TCGA-F7-A624-01 13 96293851 96293853 AGA - DZIP1 In_Frame_Del p.F98del 0.26 TCGA-F7-A624-01 13 99047624 99047624 T C FARP1 Silent p.G436G 0.25 TCGA-F7-A624-01 13 99047677 99047677 T C FARP1 Missense_Mutation p.V454A 0.16 tolerated(0.8) benign(0.001) TCGA-F7-A624-01 13 99174108 99174110 CTT - STK24 5'UTR 0.22 TCGA-F7-A624-01 13 99630082 99630082 C T DOCK9 Missense_Mutation p.A28T 0.27 tolerated_low_confidence(0.32) possibly_damaging(0.461) TCGA-F7-A624-01 14 100182518 100182518 G A CYP46A1 Missense_Mutation p.V297I 0.24 tolerated(0.27) benign(0.03) TCGA-F7-A624-01 14 100363565 100363565 T C EML1 Missense_Mutation p.V273A 0.31 tolerated(0.22) possibly_damaging(0.832) TCGA-F7-A624-01 14 100612985 100612985 G T DEGS2 3'UTR 0.44 TCGA-F7-A624-01 14 100706061 100706061 C T YY1 Silent p.G160G 0.28 TCGA-F7-A624-01 14 100743827 100743827 G A YY1 Missense_Mutation p.G379R 0.28 deleterious(0.02) probably_damaging(1) TCGA-F7-A624-01 14 101528398 101528398 T C MIR377 RNA 0.07 TCGA-F7-A624-01 14 102808375 102808375 A G ZNF839 Silent p.L881L 0.14 TCGA-F7-A624-01 14 102808639 102808639 T C ZNF839 3'UTR 0.21 TCGA-F7-A624-01 14 102963965 102963965 C T TECPR2 Silent p.N1330N 0.18 TCGA-F7-A624-01 14 103372013 103372013 C T TRAF3 Silent p.G533G 0.22 TCGA-F7-A624-01 14 103923477 103923477 A G MARK3 Splice_Site p.X138_splice 0.33 TCGA-F7-A624-01 14 104027343 104027343 T C BAG5 Missense_Mutation p.I94M 0.24 deleterious(0.01) possibly_damaging(0.812) TCGA-F7-A624-01 14 104570983 104570983 T A ASPG Missense_Mutation p.S321T 0.15 tolerated(0.36) possibly_damaging(0.893) TCGA-F7-A624-01 14 105185138 105185138 G A INF2 3'UTR 0.31 TCGA-F7-A624-01 14 105222045 105222045 A G SIVA1 Missense_Mutation p.H66R 0.29 tolerated(0.57) benign(0.004) TCGA-F7-A624-01 14 105353441 105353441 C T CEP170B Silent p.D955D 0.19 TCGA-F7-A624-01 14 105408303 105408303 G A AHNAK2 Silent p.A4495A 0.22 TCGA-F7-A624-01 14 105418137 105418137 G A AHNAK2 Silent p.S1217S 0.53 TCGA-F7-A624-01 14 105478187 105478187 A T CDCA4 Missense_Mutation p.V27E 0.23 deleterious(0.04) benign(0.056) TCGA-F7-A624-01 14 106967567 106967567 T C IGHV1-46 5'UTR 0.38 TCGA-F7-A624-01 14 20215772 20215772 T - OR4Q3 Frame_Shift_Del p.L64* 0.16 TCGA-F7-A624-01 14 20403872 20403872 G A OR4K1 Missense_Mutation p.G16E 0.11 deleterious(0.01) benign(0.048) TCGA-F7-A624-01 14 20482639 20482639 G T OR4K14 Silent p.L238L 0.19 TCGA-F7-A624-01 14 20586438 20586438 G A OR4K17 Nonsense_Mutation p.W291* 0.20 TCGA-F7-A624-01 14 20858878 20858879 - A TEP1 Frame_Shift_Ins p.G766Wfs*26 0.14 TCGA-F7-A624-01 14 20876232 20876233 AC - TEP1 Frame_Shift_Del p.S123Cfs*17 0.24 TCGA-F7-A624-01 14 21024858 21024858 T G RNASE9 Missense_Mutation p.K129T 0.37 deleterious(0.02) possibly_damaging(0.719) TCGA-F7-A624-01 14 21167683 21167683 C T RNASE4 Silent p.R51R 0.29 TCGA-F7-A624-01 14 21679385 21679385 A G HNRNPC Silent p.S306S 0.12 TCGA-F7-A624-01 14 21681250 21681250 G A HNRNPC Missense_Mutation p.P144L 0.38 deleterious(0) probably_damaging(0.937) TCGA-F7-A624-01 14 21826538 21826538 T C SUPT16H Missense_Mutation p.I784V 0.07 tolerated(0.35) benign(0.002) TCGA-F7-A624-01 14 21829058 21829058 C T SUPT16H Missense_Mutation p.R668H 0.29 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 14 21836475 21836475 T C SUPT16H Missense_Mutation p.N303S 0.08 tolerated(0.45) benign(0.026) TCGA-F7-A624-01 14 21960674 21960674 T C TOX4 Missense_Mutation p.V300A 0.05 tolerated(0.38) benign(0.006) TCGA-F7-A624-01 14 22090072 22090072 C A TRAV1-1 Missense_Mutation p.L6I 0.27 deleterious(0.03) benign(0.131) TCGA-F7-A624-01 14 22616437 22616437 G T TRAV27 Missense_Mutation p.G60C 0.23 tolerated(0.09) benign(0.166) TCGA-F7-A624-01 14 23070609 23070609 C T ABHD4 Missense_Mutation p.R21C 0.24 tolerated(1) benign(0) TCGA-F7-A624-01 14 23299233 23299233 C T MRPL52 Intron 0.10 TCGA-F7-A624-01 14 23313942 23313942 T G MMP14 Silent p.A418A 0.09 TCGA-F7-A624-01 14 23457145 23457145 T - C14orf93 Frame_Shift_Del p.E389Rfs*20 0.25 TCGA-F7-A624-01 14 23495455 23495455 T C PSMB5 Missense_Mutation p.Y212C 0.11 tolerated(0.28) benign(0.012) TCGA-F7-A624-01 14 23523833 23523835 CTC - CDH24 In_Frame_Del p.E222del 0.34 TCGA-F7-A624-01 14 23635670 23635670 G A SLC7A8 Silent p.I77I 0.21 TCGA-F7-A624-01 14 23745593 23745593 T C HOMEZ Missense_Mutation p.T282A 0.34 tolerated(0.44) benign(0.214) TCGA-F7-A624-01 14 23862231 23862231 G A MYH6 Silent p.R1047R 0.25 TCGA-F7-A624-01 14 23900121 23900121 G T MYH7 Missense_Mutation p.P295H 0.07 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 14 24040173 24040173 G A JPH4 Silent p.L589L 0.28 TCGA-F7-A624-01 14 24524815 24524815 G T LRRC16B Missense_Mutation p.K223N 0.23 deleterious(0) probably_damaging(0.943) TCGA-F7-A624-01 14 24534907 24534907 C T LRRC16B Missense_Mutation p.A1158V 0.25 tolerated(0.29) unknown(0) TCGA-F7-A624-01 14 24648626 24648628 GAG - REC8 In_Frame_Del p.E426del 0.29 TCGA-F7-A624-01 14 24650800 24650800 G T IPO4 Silent p.A988A 0.13 TCGA-F7-A624-01 14 24656326 24656326 T A IPO4 Missense_Mutation p.I207F 0.08 deleterious(0.01) benign(0.197) TCGA-F7-A624-01 14 24806088 24806088 T C RIPK3 Intron 0.23 TCGA-F7-A624-01 14 24878811 24878811 A - NYNRIN Frame_Shift_Del p.T606Qfs*3 0.22 TCGA-F7-A624-01 14 24909839 24909839 T C SDR39U1 Intron 0.33 TCGA-F7-A624-01 14 25288463 25288463 G A STXBP6 Intron 0.27 TCGA-F7-A624-01 14 26917503 26917503 T C NOVA1 Missense_Mutation p.N396D 0.22 tolerated(0.18) benign(0.007) TCGA-F7-A624-01 14 30107747 30107747 A G PRKD1 Silent p.R311R 0.20 TCGA-F7-A624-01 14 30108090 30108090 C T PRKD1 Silent p.S239S 0.21 TCGA-F7-A624-01 14 31420119 31420119 T C STRN3 Silent p.A164A 0.21 TCGA-F7-A624-01 14 31583197 31583197 T C HECTD1 Missense_Mutation p.I1914M 0.21 deleterious_low_confidence(0.01) benign(0.019) TCGA-F7-A624-01 14 31644179 31644179 C T HECTD1 Missense_Mutation p.D181N 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-F7-A624-01 14 33014698 33014698 A G AKAP6 Missense_Mutation p.D280G 0.24 deleterious(0) possibly_damaging(0.697) TCGA-F7-A624-01 14 35568532 35568532 T C PPP2R3C Missense_Mutation p.E211G 0.31 deleterious(0) probably_damaging(0.948) TCGA-F7-A624-01 14 35742694 35742694 A G KIAA0391 Missense_Mutation p.I558M 0.22 deleterious(0) probably_damaging(0.965) TCGA-F7-A624-01 14 37149783 37149783 C T SLC25A21 3'UTR 0.31 TCGA-F7-A624-01 14 37153064 37153064 G A SLC25A21 Silent p.G269G 0.16 TCGA-F7-A624-01 14 37777705 37777705 G A MIPOL1 Missense_Mutation p.R270Q 0.25 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 14 39815160 39815160 T C CTAGE5 Silent p.C633C 0.08 TCGA-F7-A624-01 14 39818098 39818098 C A CTAGE5 Missense_Mutation p.P727H 0.05 deleterious(0) probably_damaging(0.99) TCGA-F7-A624-01 14 42357119 42357119 G A LRFN5 Missense_Mutation p.A431T 0.31 deleterious(0.02) benign(0.141) TCGA-F7-A624-01 14 45369876 45369877 CT - C14orf28 Frame_Shift_Del p.L82Sfs*4 0.14 TCGA-F7-A624-01 14 50092539 50092539 T C DNAAF2 Silent p.Q745Q 0.19 TCGA-F7-A624-01 14 50092624 50092624 A G DNAAF2 Missense_Mutation p.L717P 0.42 tolerated(0.18) benign(0.015) TCGA-F7-A624-01 14 50272836 50272836 G - NEMF Frame_Shift_Del p.P587Hfs*4 0.19 TCGA-F7-A624-01 14 50295332 50295332 A G NEMF Splice_Site p.X475_splice 0.33 TCGA-F7-A624-01 14 50459020 50459020 T C C14orf182 3'UTR 0.30 TCGA-F7-A624-01 14 51259517 51259517 G A NIN Silent p.S116S 0.28 TCGA-F7-A624-01 14 53010328 53010328 T C TXNDC16 5'UTR 0.14 TCGA-F7-A624-01 14 53235559 53235559 A G STYX Missense_Mutation p.E169G 0.42 deleterious(0) probably_damaging(0.944) TCGA-F7-A624-01 14 55310388 55310388 T C GCH1 3'UTR 0.26 TCGA-F7-A624-01 14 55649131 55649131 C T DLGAP5 Missense_Mutation p.R151Q 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-F7-A624-01 14 55817580 55817580 A - FBXO34 Frame_Shift_Del p.A160Pfs*8 0.30 TCGA-F7-A624-01 14 55817973 55817973 G A FBXO34 Missense_Mutation p.E289K 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-F7-A624-01 14 55818975 55818975 C T FBXO34 Nonsense_Mutation p.R623* 0.36 TCGA-F7-A624-01 14 57747082 57747082 A G AP5M1 Missense_Mutation p.Y297C 0.24 deleterious(0) possibly_damaging(0.908) TCGA-F7-A624-01 14 58055944 58055944 T C SLC35F4 Missense_Mutation p.K229E 0.15 tolerated(0.42) benign(0.438) TCGA-F7-A624-01 14 58831368 58831368 A C ARID4A Missense_Mutation p.K854T 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.833) TCGA-F7-A624-01 14 58869469 58869469 G A TOMM20L Nonsense_Mutation p.W84* 0.05 TCGA-F7-A624-01 14 59797293 59797293 A G DAAM1 Missense_Mutation p.M483V 0.09 deleterious(0.03) unknown(0) TCGA-F7-A624-01 14 60193834 60193834 A G RTN1 Missense_Mutation p.L523P 0.33 tolerated(0.12) benign(0.037) TCGA-F7-A624-01 14 60976367 60976367 A G SIX6 Missense_Mutation p.H84R 0.08 tolerated(0.06) benign(0.229) TCGA-F7-A624-01 14 64596825 64596825 T C SYNE2 Silent p.P4733P 0.20 TCGA-F7-A624-01 14 64892912 64892912 T C MTHFD1 Splice_Site p.X376_splice 0.12 TCGA-F7-A624-01 14 64906957 64906957 A G MTHFD1 Silent p.K596K 0.27 TCGA-F7-A624-01 14 64916254 64916254 G - MTHFD1 Frame_Shift_Del p.G792Afs*5 0.22 TCGA-F7-A624-01 14 65007834 65007834 A G HSPA2 Silent p.K89K 0.24 TCGA-F7-A624-01 14 68219108 68219108 T C ZFYVE26 Missense_Mutation p.T2442A 0.15 tolerated(0.93) benign(0.001) TCGA-F7-A624-01 14 69341568 69341568 G A ACTN1 3'UTR 0.14 TCGA-F7-A624-01 14 69520911 69520911 T C DCAF5 Missense_Mutation p.N831S 0.21 deleterious_low_confidence(0) possibly_damaging(0.528) TCGA-F7-A624-01 14 69866167 69866167 T A SLC39A9 Silent p.A27A 0.32 TCGA-F7-A624-01 14 70634742 70634742 A G SLC8A3 Missense_Mutation p.V133A 0.26 deleterious(0) probably_damaging(0.951) TCGA-F7-A624-01 14 70713731 70713731 A C ADAM21P1 RNA 0.24 TCGA-F7-A624-01 14 70925553 70925553 G - ADAM21 Frame_Shift_Del p.C446Lfs*100 0.21 TCGA-F7-A624-01 14 72139141 72139141 A G SIPA1L1 Missense_Mutation p.N969S 0.31 deleterious(0.01) probably_damaging(0.97) TCGA-F7-A624-01 14 73412598 73412598 A G DCAF4 Missense_Mutation p.T181A 0.21 tolerated(0.1) benign(0.1) TCGA-F7-A624-01 14 73759555 73759558 TCTC - NUMB Frame_Shift_Del p.E112Kfs*42 0.30 TCGA-F7-A624-01 14 74205363 74205363 A G ELMSAN1 Missense_Mutation p.V450A 0.19 deleterious(0) benign(0.341) TCGA-F7-A624-01 14 74206218 74206218 A G ELMSAN1 Missense_Mutation p.L165P 0.19 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-F7-A624-01 14 74999222 74999222 A G LTBP2 Missense_Mutation p.C632R 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 14 75018993 75018993 C G LTBP2 Silent p.P432P 0.29 TCGA-F7-A624-01 14 75078569 75078569 C A LTBP2 Missense_Mutation p.A27S 0.23 deleterious(0.01) probably_damaging(0.942) TCGA-F7-A624-01 14 75142422 75142422 A G AREL1 Missense_Mutation p.Y354H 0.05 tolerated(0.07) probably_damaging(0.994) TCGA-F7-A624-01 14 75265091 75265091 A G YLPM1 Missense_Mutation p.T1031A 0.25 benign(0.015) TCGA-F7-A624-01 14 75475775 75475775 G A EIF2B2 Missense_Mutation p.D314N 0.28 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 14 75475827 75475827 A G EIF2B2 Missense_Mutation p.N331S 0.22 deleterious(0.01) benign(0.158) TCGA-F7-A624-01 14 75515253 75515253 T C MLH3 Missense_Mutation p.N369S 0.19 tolerated(0.09) benign(0.081) TCGA-F7-A624-01 14 76091084 76091084 T C FLVCR2 Missense_Mutation p.V314A 0.07 deleterious(0) benign(0.102) TCGA-F7-A624-01 14 77294742 77294742 A G C14orf166B Missense_Mutation p.E66G 0.25 deleterious(0) probably_damaging(0.937) TCGA-F7-A624-01 14 77494128 77494128 G A IRF2BPL Missense_Mutation p.A3V 0.41 deleterious(0) unknown(0) TCGA-F7-A624-01 14 77809655 77809655 G A TMED8 Missense_Mutation p.A209V 0.29 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 14 80163993 80163993 A G NRXN3 Missense_Mutation p.N840D 0.09 deleterious(0) benign(0) TCGA-F7-A624-01 14 88904243 88904243 A G SPATA7 Missense_Mutation p.N426S 0.06 tolerated(0.75) benign(0.03) TCGA-F7-A624-01 14 89037460 89037460 T C ZC3H14 Missense_Mutation p.V76A 0.34 tolerated(0.21) probably_damaging(0.997) TCGA-F7-A624-01 14 89087643 89087643 G A EML5 Silent p.G1672G 0.26 TCGA-F7-A624-01 14 89202827 89202827 C T EML5 Silent p.V310V 0.24 TCGA-F7-A624-01 14 89647123 89647123 G A FOXN3 Missense_Mutation p.A280V 0.32 tolerated(0.14) benign(0.015) TCGA-F7-A624-01 14 89878383 89878383 T C FOXN3 Silent p.E146E 0.23 TCGA-F7-A624-01 14 90871129 90871130 - A CALM1 3'UTR 0.33 TCGA-F7-A624-01 14 92441051 92441051 T C TRIP11 Missense_Mutation p.M1832V 0.34 tolerated(0.86) possibly_damaging(0.651) TCGA-F7-A624-01 14 92600662 92600662 A G CPSF2 Missense_Mutation p.I126M 0.10 deleterious(0.04) probably_damaging(0.994) TCGA-F7-A624-01 14 93712550 93712550 A G BTBD7 Missense_Mutation p.V735A 0.20 deleterious_low_confidence(0.03) benign(0.055) TCGA-F7-A624-01 14 94155029 94155029 T C UNC79 Missense_Mutation p.S2172P 0.08 tolerated(0.05) possibly_damaging(0.809) TCGA-F7-A624-01 14 94404137 94404137 G T ASB2 Missense_Mutation p.L560I 0.09 deleterious(0.04) possibly_damaging(0.831) TCGA-F7-A624-01 14 95557552 95557552 G A DICER1 Missense_Mutation p.R1839W 0.05 deleterious(0.02) possibly_damaging(0.527) TCGA-F7-A624-01 14 95590838 95590838 T C DICER1 Silent p.A357A 0.22 TCGA-F7-A624-01 14 95590933 95590933 C A DICER1 Missense_Mutation p.V326L 0.08 tolerated(0.78) benign(0.16) TCGA-F7-A624-01 14 95595892 95595892 C A DICER1 Missense_Mutation p.E217D 0.32 tolerated(0.57) benign(0.002) TCGA-F7-A624-01 14 95662949 95662949 T - CLMN Frame_Shift_Del p.K865Rfs*10 0.34 TCGA-F7-A624-01 14 95679679 95679679 C T CLMN Missense_Mutation p.G162D 0.27 deleterious(0.03) possibly_damaging(0.521) TCGA-F7-A624-01 14 96707261 96707261 A G BDKRB2 Missense_Mutation p.K199R 0.25 tolerated(0.86) benign(0.003) TCGA-F7-A624-01 14 96752283 96752283 C T ATG2B Missense_Mutation p.A2016T 0.24 tolerated(0.43) probably_damaging(0.966) TCGA-F7-A624-01 14 99642353 99642353 C - BCL11B Frame_Shift_Del p.V274Wfs*7 0.35 TCGA-F7-A624-01 15 100272104 100272104 T C LYSMD4 Missense_Mutation p.T5A 0.18 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-F7-A624-01 15 101120735 101120735 A G LINS Missense_Mutation p.S105P 0.25 deleterious(0) probably_damaging(0.964) TCGA-F7-A624-01 15 101523854 101523854 C T LRRK1 Missense_Mutation p.A128V 0.16 deleterious(0) possibly_damaging(0.804) TCGA-F7-A624-01 15 102197157 102197157 T C TARSL2 Missense_Mutation p.N743S 0.12 tolerated(0.08) possibly_damaging(0.542) TCGA-F7-A624-01 15 102305099 102305099 C G DNM1P47 RNA 0.22 TCGA-F7-A624-01 15 20645883 20645883 C T HERC2P3 RNA 0.15 TCGA-F7-A624-01 15 22929841 22929841 A G CYFIP1 Missense_Mutation p.D172G 0.07 deleterious(0.01) benign(0.309) TCGA-F7-A624-01 15 23002993 23002993 G A CYFIP1 Missense_Mutation p.V1239M 0.17 deleterious(0) probably_damaging(0.937) TCGA-F7-A624-01 15 23205102 23205102 T C WHAMMP3 RNA 0.18 TCGA-F7-A624-01 15 23811044 23811044 G A MKRN3 Missense_Mutation p.G39R 0.26 tolerated(0.05) possibly_damaging(0.67) TCGA-F7-A624-01 15 23890792 23890792 G A MAGEL2 Missense_Mutation p.P97S 0.22 tolerated_low_confidence(0.56) benign(0.01) TCGA-F7-A624-01 15 24922233 24922233 A G NPAP1 Missense_Mutation p.T407A 0.24 tolerated(0.15) benign(0.133) TCGA-F7-A624-01 15 25312960 25312960 A G SNORD116-7 RNA 0.05 TCGA-F7-A624-01 15 25415738 25415738 G A SNORD115-3 5'Flank 0.16 TCGA-F7-A624-01 15 25981276 25981276 T C ATP10A Missense_Mutation p.N223D 0.15 tolerated(1) benign(0.006) TCGA-F7-A624-01 15 28356800 28356800 C T HERC2 3'UTR 0.24 TCGA-F7-A624-01 15 28369194 28369194 A T HERC2 Missense_Mutation p.S4393T 0.11 possibly_damaging(0.771) TCGA-F7-A624-01 15 28391388 28391388 C T HERC2 Missense_Mutation p.R3668Q 0.21 probably_damaging(0.98) TCGA-F7-A624-01 15 28420789 28420789 A G HERC2 Missense_Mutation p.Y3234H 0.32 probably_damaging(0.989) TCGA-F7-A624-01 15 29409467 29409467 T C APBA2 3'UTR 0.18 TCGA-F7-A624-01 15 29561504 29561504 A G NDNL2 Missense_Mutation p.Y136H 0.32 tolerated(0.25) benign(0.221) TCGA-F7-A624-01 15 30058575 30058575 T C TJP1 Silent p.A161A 0.14 TCGA-F7-A624-01 15 31234076 31234076 A G MTMR10 Missense_Mutation p.V644A 0.11 deleterious(0.03) benign(0.007) TCGA-F7-A624-01 15 31253111 31253111 A G MTMR10 Missense_Mutation p.I244T 0.18 tolerated(0.09) benign(0.184) TCGA-F7-A624-01 15 31319297 31319297 G A TRPM1 Missense_Mutation p.S1123L 0.18 deleterious(0) probably_damaging(0.987) TCGA-F7-A624-01 15 32916433 32916433 A T ARHGAP11A Silent p.G119G 0.22 TCGA-F7-A624-01 15 33023168 33023168 T C GREM1 Missense_Mutation p.W93R 0.22 deleterious(0) probably_damaging(0.928) TCGA-F7-A624-01 15 33878260 33878260 G A RYR3 Silent p.A577A 0.28 TCGA-F7-A624-01 15 34529731 34529731 T C SLC12A6 Missense_Mutation p.I941M 0.12 tolerated(1) benign(0.005) TCGA-F7-A624-01 15 35045150 35045150 C T GJD2 Silent p.E165E 0.10 TCGA-F7-A624-01 15 40557143 40557143 G A PAK6 Missense_Mutation p.V53M 0.22 tolerated(0.66) probably_damaging(1) TCGA-F7-A624-01 15 40855200 40855200 C G C15orf57 Missense_Mutation p.E14D 0.23 tolerated(0.32) benign(0.39) TCGA-F7-A624-01 15 41146652 41146652 A G SPINT1 Missense_Mutation p.D349G 0.14 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 15 41195445 41195445 A T VPS18 Missense_Mutation p.E943V 0.31 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 15 41247586 41247586 G A CHAC1 Missense_Mutation p.V137M 0.27 tolerated(0.08) probably_damaging(0.997) TCGA-F7-A624-01 15 41364187 41364187 T C INO80 Missense_Mutation p.T489A 0.08 tolerated(0.15) benign(0.008) TCGA-F7-A624-01 15 41377755 41377755 T - INO80 Frame_Shift_Del p.R229Dfs*45 0.09 TCGA-F7-A624-01 15 41750018 41750019 AG - RTF1 Frame_Shift_Del p.E205Afs*18 0.14 TCGA-F7-A624-01 15 42113858 42113858 A G MAPKBP1 Missense_Mutation p.E938G 0.14 tolerated(0.11) possibly_damaging(0.869) TCGA-F7-A624-01 15 42129290 42129290 A G JMJD7 Missense_Mutation p.Y296C 0.39 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 15 42140094 42140094 T C PLA2G4B 3'UTR 0.29 TCGA-F7-A624-01 15 42147810 42147810 C T SPTBN5 Missense_Mutation p.S3052N 0.14 possibly_damaging(0.571) TCGA-F7-A624-01 15 42436233 42436233 A G PLA2G4F Silent p.P695P 0.20 TCGA-F7-A624-01 15 42439479 42439479 C T PLA2G4F Missense_Mutation p.R421H 0.15 tolerated(0.53) benign(0.015) TCGA-F7-A624-01 15 43023206 43023206 A G CDAN1 Missense_Mutation p.F642L 0.24 tolerated(0.09) probably_damaging(0.961) TCGA-F7-A624-01 15 43340688 43340688 A G UBR1 Missense_Mutation p.Y481H 0.32 deleterious(0.02) probably_damaging(0.959) TCGA-F7-A624-01 15 43461855 43461855 G A TMEM62 Missense_Mutation p.R454Q 0.12 tolerated(0.35) benign(0.003) TCGA-F7-A624-01 15 43476807 43476807 G A TMEM62 3'UTR 0.23 TCGA-F7-A624-01 15 43502557 43502557 G A EPB42 Silent p.H240H 0.31 TCGA-F7-A624-01 15 43663574 43663574 G A TUBGCP4 Missense_Mutation p.A8T 0.33 tolerated(0.11) possibly_damaging(0.828) TCGA-F7-A624-01 15 43738703 43738703 C T TP53BP1 Silent p.G974G 0.09 TCGA-F7-A624-01 15 43748260 43748260 A G TP53BP1 Missense_Mutation p.L849S 0.36 tolerated(0.31) benign(0.008) TCGA-F7-A624-01 15 43815131 43815131 A G MAP1A Missense_Mutation p.D487G 0.13 possibly_damaging(0.84) TCGA-F7-A624-01 15 44067752 44067752 T C ELL3 Silent p.S180S 0.15 TCGA-F7-A624-01 15 44093895 44093896 - T HYPK Intron 0.31 TCGA-F7-A624-01 15 45401114 45401114 T C DUOX2 Missense_Mutation p.D424G 0.28 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 15 45412817 45412817 G A DUOXA1 Missense_Mutation p.A176V 0.36 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 15 45694589 45694589 T C SPATA5L1 5'UTR 0.33 TCGA-F7-A624-01 15 45954196 45954196 C T SQRDL Missense_Mutation p.A93V 0.38 tolerated(1) benign(0.172) TCGA-F7-A624-01 15 49327791 49327791 A G SECISBP2L Missense_Mutation p.Y90H 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 15 49426244 49426244 A - COPS2 Frame_Shift_Del p.F266Lfs*19 0.24 TCGA-F7-A624-01 15 49903433 49903433 T C FAM227B Silent p.E28E 0.11 TCGA-F7-A624-01 15 50534355 50534355 A - HDC 3'UTR 0.24 TCGA-F7-A624-01 15 50868071 50868071 T C TRPM7 Missense_Mutation p.Y1555C 0.08 deleterious(0.02) probably_damaging(0.978) TCGA-F7-A624-01 15 51503019 51503019 A G CYP19A1 Missense_Mutation p.C500R 0.17 tolerated_low_confidence(0.19) benign(0.209) TCGA-F7-A624-01 15 51504657 51504657 G A CYP19A1 Missense_Mutation p.R375C 0.14 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 15 51696750 51696750 A G GLDN Silent p.T485T 0.18 TCGA-F7-A624-01 15 52609406 52609406 G A MYO5A Nonsense_Mutation p.Q1725* 0.31 TCGA-F7-A624-01 15 52671835 52671835 T C MYO5A Missense_Mutation p.E732G 0.10 deleterious(0.01) possibly_damaging(0.792) TCGA-F7-A624-01 15 52672031 52672031 C T MYO5A Missense_Mutation p.G696D 0.12 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 15 52684237 52684237 T C MYO5A Missense_Mutation p.M478V 0.15 tolerated(0.18) benign(0.42) TCGA-F7-A624-01 15 52697557 52697557 C T MYO5A Missense_Mutation p.R327Q 0.24 tolerated(0.42) benign(0.015) TCGA-F7-A624-01 15 53049695 53049695 A - ONECUT1 3'UTR 0.13 TCGA-F7-A624-01 15 55484953 55484953 C T RSL24D1 Missense_Mutation p.A54T 0.23 deleterious(0) possibly_damaging(0.566) TCGA-F7-A624-01 15 55621922 55621922 T - PIGB Frame_Shift_Del p.C177Afs*26 0.14 TCGA-F7-A624-01 15 55790030 55790030 C T DYX1C1 Missense_Mutation p.A51T 0.29 deleterious(0.03) possibly_damaging(0.794) TCGA-F7-A624-01 15 55912892 55912892 A - PRTG Frame_Shift_Del p.F1056Sfs*30 0.29 TCGA-F7-A624-01 15 58004192 58004192 C T POLR2M Nonsense_Mutation p.R257* 0.23 TCGA-F7-A624-01 15 58256134 58256134 C G ALDH1A2 Missense_Mutation p.K345N 0.17 deleterious(0.03) benign(0.315) TCGA-F7-A624-01 15 59102491 59102491 A T FAM63B Missense_Mutation p.R342S 0.25 deleterious(0) benign(0.142) TCGA-F7-A624-01 15 59323315 59323315 G A RNF111 Silent p.Q98Q 0.20 TCGA-F7-A624-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.26 TCGA-F7-A624-01 15 59499756 59499756 G A LDHAL6B Missense_Mutation p.R206H 0.34 tolerated(0.11) benign(0.197) TCGA-F7-A624-01 15 63125774 63125774 C T TLN2 Silent p.S2358S 0.20 TCGA-F7-A624-01 15 63419875 63419875 G A LACTB Silent p.L313L 0.13 TCGA-F7-A624-01 15 64067489 64067489 G A HERC1 Missense_Mutation p.R112C 0.39 probably_damaging(0.996) TCGA-F7-A624-01 15 64067503 64067503 A T HERC1 Missense_Mutation p.L107Q 0.19 possibly_damaging(0.905) TCGA-F7-A624-01 15 64449054 64449054 T C PPIB Missense_Mutation p.Y133C 0.23 deleterious(0.02) probably_damaging(1) TCGA-F7-A624-01 15 64710846 64710846 A G TRIP4 Missense_Mutation p.E426G 0.27 deleterious(0) possibly_damaging(0.611) TCGA-F7-A624-01 15 65449183 65449183 T C CLPX Missense_Mutation p.Q382R 0.07 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 15 65450102 65450102 C T CLPX Missense_Mutation p.V347M 0.34 deleterious(0) probably_damaging(0.961) TCGA-F7-A624-01 15 65490345 65490345 C T CILP Missense_Mutation p.R760Q 0.28 tolerated(0.51) probably_damaging(0.99) TCGA-F7-A624-01 15 65624371 65624371 T C IGDCC3 Silent p.Q352Q 0.34 TCGA-F7-A624-01 15 65983808 65983808 T C DENND4A Missense_Mutation p.T1041A 0.23 tolerated(0.72) benign(0) TCGA-F7-A624-01 15 66223200 66223200 T C MEGF11 Missense_Mutation p.T457A 0.12 tolerated(1) benign(0.004) TCGA-F7-A624-01 15 67459160 67459160 T C SMAD3 Silent p.S192S 0.30 TCGA-F7-A624-01 15 67496391 67496391 C T AAGAB Missense_Mutation p.E271K 0.23 tolerated(0.27) probably_damaging(0.999) TCGA-F7-A624-01 15 68118741 68118741 G A SKOR1 Missense_Mutation p.R378H 0.26 deleterious_low_confidence(0.01) benign(0.253) TCGA-F7-A624-01 15 68582120 68582120 G A FEM1B Missense_Mutation p.E142K 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-F7-A624-01 15 68695275 68695275 T C ITGA11 Missense_Mutation p.D49G 0.42 tolerated(0.23) benign(0.021) TCGA-F7-A624-01 15 69238372 69238372 G T SPESP1 Nonsense_Mutation p.E167* 0.14 TCGA-F7-A624-01 15 69548582 69548582 A G GLCE Missense_Mutation p.Y146C 0.24 tolerated(0.08) probably_damaging(0.915) TCGA-F7-A624-01 15 71125077 71125077 C T LARP6 Missense_Mutation p.E264K 0.23 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 15 72189934 72189934 G C MYO9A Nonsense_Mutation p.S1637* 0.20 TCGA-F7-A624-01 15 73889513 73889513 C T NPTN Missense_Mutation p.G97S 0.16 tolerated(0.58) probably_damaging(0.994) TCGA-F7-A624-01 15 74467666 74467666 A G ISLR Missense_Mutation p.N156S 0.29 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 15 74703101 74703101 C T SEMA7A Missense_Mutation p.R622H 0.12 tolerated(0.36) benign(0.005) TCGA-F7-A624-01 15 74704350 74704350 C A SEMA7A Missense_Mutation p.R433M 0.14 deleterious(0) possibly_damaging(0.672) TCGA-F7-A624-01 15 74963875 74963875 T C EDC3 Silent p.Q135Q 0.18 TCGA-F7-A624-01 15 75047248 75047248 G T CYP1A2 Missense_Mutation p.R457L 0.27 deleterious(0) possibly_damaging(0.637) TCGA-F7-A624-01 15 75501025 75501025 C T C15orf39 Missense_Mutation p.S879L 0.26 deleterious(0) benign(0.329) TCGA-F7-A624-01 15 75658881 75658881 C A MAN2C1 Missense_Mutation p.G135V 0.15 tolerated(0.09) benign(0.016) TCGA-F7-A624-01 15 76580213 76580213 T G ETFA Missense_Mutation p.D142A 0.32 deleterious(0.01) possibly_damaging(0.878) TCGA-F7-A624-01 15 76632620 76632620 C T ISL2 Missense_Mutation p.A172V 0.23 tolerated(0.22) benign(0.009) TCGA-F7-A624-01 15 76633580 76633580 T C ISL2 Missense_Mutation p.W301R 0.25 deleterious(0) probably_damaging(0.91) TCGA-F7-A624-01 15 77907860 77907860 C T LINGO1 Missense_Mutation p.R130H 0.35 tolerated(0.05) benign(0.022) TCGA-F7-A624-01 15 78526850 78526850 C T ACSBG1 5'UTR 0.17 TCGA-F7-A624-01 15 78893979 78893979 T C CHRNA3 Silent p.T335T 0.28 TCGA-F7-A624-01 15 79186493 79186493 G A MORF4L1 Silent p.Q280Q 0.32 TCGA-F7-A624-01 15 81201475 81201475 C T KIAA1199 Missense_Mutation p.T542M 0.17 tolerated(0.16) benign(0) TCGA-F7-A624-01 15 81229133 81229133 A G KIAA1199 Missense_Mutation p.Y1043C 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-F7-A624-01 15 81654580 81654580 C G TMC3 Missense_Mutation p.M125I 0.14 deleterious(0.03) benign(0.212) TCGA-F7-A624-01 15 83455722 83455722 C A FSD2 Missense_Mutation p.G141C 0.19 deleterious(0) possibly_damaging(0.687) TCGA-F7-A624-01 15 85327800 85327800 C A ZNF592 Missense_Mutation p.L632M 0.27 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 15 85400612 85400612 G A ALPK3 Silent p.A1083A 0.24 TCGA-F7-A624-01 15 85401778 85401778 T C ALPK3 Missense_Mutation p.L1472P 0.24 tolerated(0.59) benign(0.245) TCGA-F7-A624-01 15 86697774 86697774 C T AGBL1 Missense_Mutation p.R80C 0.22 deleterious(0) probably_damaging(0.939) TCGA-F7-A624-01 15 86806031 86806031 T C AGBL1 Missense_Mutation p.V285A 0.17 deleterious(0) benign(0.342) TCGA-F7-A624-01 15 88678452 88678452 A T NTRK3 Missense_Mutation p.C362S 0.16 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 15 89073994 89073994 C T DET1 Missense_Mutation p.A326T 0.18 tolerated(0.15) possibly_damaging(0.493) TCGA-F7-A624-01 15 89402512 89402512 G A ACAN Silent p.T2232T 0.40 TCGA-F7-A624-01 15 90190140 90190140 C - KIF7 Frame_Shift_Del p.G570Vfs*29 0.26 TCGA-F7-A624-01 15 90190254 90190254 A G KIF7 Missense_Mutation p.V532A 0.12 tolerated(1) benign(0.001) TCGA-F7-A624-01 15 90320301 90320301 G - MESP2 Frame_Shift_Del p.V240Sfs*241 0.24 TCGA-F7-A624-01 15 90346715 90346715 G T ANPEP Silent p.L487L 0.33 TCGA-F7-A624-01 15 91303895 91303895 G A BLM Missense_Mutation p.R431K 0.16 tolerated(0.71) benign(0.003) TCGA-F7-A624-01 15 91522491 91522491 T C PRC1 Missense_Mutation p.D335G 0.24 deleterious(0) probably_damaging(0.986) TCGA-F7-A624-01 15 91537672 91537672 G A PRC1 5'UTR 0.25 TCGA-F7-A624-01 15 93521521 93521521 G A CHD2 Missense_Mutation p.A879T 0.25 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 15 97328364 97328364 C A SPATA8 3'UTR 0.17 TCGA-F7-A624-01 15 99472871 99472871 A G IGF1R Missense_Mutation p.Y956C 0.19 deleterious(0.03) benign(0.003) TCGA-F7-A624-01 15 99500721 99500721 G A IGF1R 3'UTR 0.23 TCGA-F7-A624-01 15 99500771 99500771 A G IGF1R 3'UTR 0.21 TCGA-F7-A624-01 15 99678161 99678161 G A TTC23 3'UTR 0.24 TCGA-F7-A624-01 15 99678261 99678261 T C TTC23 Missense_Mutation p.Q433R 0.18 tolerated(0.21) benign(0.01) TCGA-F7-A624-01 16 10524744 10524744 A G ATF7IP2 Silent p.K89K 0.25 TCGA-F7-A624-01 16 108407 108407 A G RHBDF1 Missense_Mutation p.F834L 0.07 tolerated(0.26) benign(0.001) TCGA-F7-A624-01 16 11001615 11001615 C T CIITA Missense_Mutation p.R756C 0.24 deleterious(0.02) benign(0.246) TCGA-F7-A624-01 16 11855799 11855799 T - ZC3H7A Frame_Shift_Del p.N727Tfs*20 0.27 TCGA-F7-A624-01 16 12662375 12662375 G A SNX29 Silent p.P777P 0.27 TCGA-F7-A624-01 16 129268 129268 T C MPG 5'UTR 0.36 TCGA-F7-A624-01 16 14738138 14738138 A G BFAR 5'UTR 0.25 TCGA-F7-A624-01 16 14968915 14968915 G A NOMO1 Missense_Mutation p.A693T 0.30 tolerated(0.42) benign(0.013) TCGA-F7-A624-01 16 14989418 14989418 C T NOMO1 Silent p.R1195R 0.14 TCGA-F7-A624-01 16 15141945 15141945 T C NTAN1 Silent p.R31R 0.05 TCGA-F7-A624-01 16 15155517 15155517 G A RRN3 3'UTR 0.31 TCGA-F7-A624-01 16 1537432 1537432 C T PTX4 Silent p.S222S 0.30 TCGA-F7-A624-01 16 15609245 15609245 C T C16orf45 Missense_Mutation p.R64W 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 16 1574554 1574554 T C IFT140 Missense_Mutation p.K1047R 0.30 deleterious(0.02) benign(0.103) TCGA-F7-A624-01 16 15817868 15817868 G A NDE1 Intron 0.33 TCGA-F7-A624-01 16 1584250 1584250 G A TMEM204 5'UTR 0.27 TCGA-F7-A624-01 16 1841065 1841065 G A IGFALS Missense_Mutation p.R490C 0.37 deleterious(0.03) possibly_damaging(0.892) TCGA-F7-A624-01 16 1841424 1841424 C T IGFALS Missense_Mutation p.R370H 0.26 deleterious(0.05) benign(0.081) TCGA-F7-A624-01 16 19576215 19576215 C T C16orf62 Silent p.C109C 0.24 TCGA-F7-A624-01 16 19628077 19628077 T C C16orf62 Missense_Mutation p.Y480H 0.28 deleterious(0) possibly_damaging(0.904) TCGA-F7-A624-01 16 19775178 19775178 A G IQCK Silent p.R161R 0.25 TCGA-F7-A624-01 16 2012495 2012495 T C RPS2 Intron 0.18 TCGA-F7-A624-01 16 20355487 20355487 T C UMOD Missense_Mutation p.E397G 0.22 tolerated(0.46) benign(0.056) TCGA-F7-A624-01 16 20482920 20482920 A G ACSM2A Missense_Mutation p.N268S 0.19 tolerated(0.53) possibly_damaging(0.679) TCGA-F7-A624-01 16 2140883 2140886 ACCT - PKD1 Splice_Site p.X4001_splice 0.27 TCGA-F7-A624-01 16 2143020 2143020 G A PKD1 Silent p.H3697H 0.24 TCGA-F7-A624-01 16 2164521 2164521 G A PKD1 Missense_Mutation p.R835C 0.35 possibly_damaging(0.462) TCGA-F7-A624-01 16 21854862 21854862 A G NPIPB4 Silent p.S130S 0.10 TCGA-F7-A624-01 16 22385621 22385621 C T CDR2 Missense_Mutation p.E4K 0.28 deleterious(0.03) benign(0.154) TCGA-F7-A624-01 16 2287441 2287441 G T DNASE1L2 Nonsense_Mutation p.E128* 0.26 TCGA-F7-A624-01 16 2290114 2290114 G A ECI1 Nonsense_Mutation p.R259* 0.34 TCGA-F7-A624-01 16 2313109 2313109 C T RNPS1 Missense_Mutation p.R136H 0.23 deleterious(0.03) unknown(0) TCGA-F7-A624-01 16 23453903 23453903 T C COG7 Missense_Mutation p.T167A 0.08 deleterious(0.02) benign(0.349) TCGA-F7-A624-01 16 2347421 2347421 G A ABCA3 Silent p.D724D 0.22 TCGA-F7-A624-01 16 23701352 23701352 C T PLK1 Missense_Mutation p.R594C 0.26 deleterious(0.01) possibly_damaging(0.471) TCGA-F7-A624-01 16 23847555 23847555 T C PRKCB Missense_Mutation p.F20S 0.16 tolerated(0.06) possibly_damaging(0.907) TCGA-F7-A624-01 16 24580555 24580555 A G RBBP6 Silent p.G848G 0.18 TCGA-F7-A624-01 16 24833454 24833454 A G TNRC6A Missense_Mutation p.N1787D 0.28 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 16 24835045 24835045 G A TNRC6A Missense_Mutation p.D1936N 0.26 deleterious(0) possibly_damaging(0.797) TCGA-F7-A624-01 16 249183 249183 C T LUC7L Missense_Mutation p.V189I 0.28 deleterious(0.04) probably_damaging(0.951) TCGA-F7-A624-01 16 24965979 24965979 G A ARHGAP17 Missense_Mutation p.A266V 0.25 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 16 2510684 2510684 C - C16orf59 Frame_Shift_Del p.L64Ffs*17 0.20 TCGA-F7-A624-01 16 2546979 2546979 C T RP11-20I23.1 Missense_Mutation p.A277V 0.26 tolerated(0.06) possibly_damaging(0.616) TCGA-F7-A624-01 16 2547000 2547000 A G RP11-20I23.1 Missense_Mutation p.K284R 0.21 tolerated(0.1) benign(0.059) TCGA-F7-A624-01 16 27221930 27221930 A G KDM8 Silent p.Q200Q 0.15 TCGA-F7-A624-01 16 27231984 27231984 C T KDM8 Missense_Mutation p.P433L 0.21 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 16 27238046 27238046 T C NSMCE1 Missense_Mutation p.I199V 0.30 deleterious(0.01) benign(0.008) TCGA-F7-A624-01 16 27367196 27367196 C T IL4R Silent p.A246A 0.19 TCGA-F7-A624-01 16 27373961 27373961 T C IL4R Missense_Mutation p.S430P 0.30 tolerated(0.21) benign(0.081) TCGA-F7-A624-01 16 27472687 27472687 T C GTF3C1 Missense_Mutation p.K2105R 0.19 tolerated(0.06) benign(0.027) TCGA-F7-A624-01 16 27480660 27480660 T C GTF3C1 Missense_Mutation p.K1676E 0.27 deleterious(0.02) benign(0.33) TCGA-F7-A624-01 16 2765775 2765775 G A PRSS27 Silent p.C60C 0.17 TCGA-F7-A624-01 16 27709681 27709681 G A KIAA0556 Missense_Mutation p.A325T 0.21 tolerated(0.12) probably_damaging(0.985) TCGA-F7-A624-01 16 2816806 2816806 C T SRRM2 Missense_Mutation p.P2093S 0.11 unknown(0) TCGA-F7-A624-01 16 28845883 28845883 A G ATXN2L Missense_Mutation p.M768V 0.24 tolerated(0.07) possibly_damaging(0.828) TCGA-F7-A624-01 16 28856724 28856724 T C TUFM Missense_Mutation p.I109V 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-F7-A624-01 16 28890060 28890060 G A ATP2A1 Missense_Mutation p.G23D 0.19 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 16 2906204 2906204 C T PRSS22 Missense_Mutation p.E54K 0.20 tolerated(0.19) possibly_damaging(0.597) TCGA-F7-A624-01 16 29810350 29810350 C T KIF22 Missense_Mutation p.R202W 0.17 tolerated(0.05) benign(0.059) TCGA-F7-A624-01 16 29820065 29820065 A G MAZ Intron 0.16 TCGA-F7-A624-01 16 30364596 30364596 C T CD2BP2 Missense_Mutation p.R274Q 0.23 tolerated(0.54) benign(0.014) TCGA-F7-A624-01 16 30365563 30365563 C A CD2BP2 Missense_Mutation p.E53D 0.22 tolerated(1) benign(0) TCGA-F7-A624-01 16 30410127 30410127 A G ZNF48 Missense_Mutation p.N519S 0.27 tolerated(0.3) benign(0.048) TCGA-F7-A624-01 16 30495265 30495265 C T ITGAL Silent p.I280I 0.28 TCGA-F7-A624-01 16 30536854 30536855 - A ZNF768 Frame_Shift_Ins p.G203Wfs*15 0.21 TCGA-F7-A624-01 16 30566842 30566842 C T ZNF764 Silent p.S300S 0.25 TCGA-F7-A624-01 16 3065456 3065456 C - CLDN6 Frame_Shift_Del p.S190Pfs*70 0.23 TCGA-F7-A624-01 16 30732158 30732158 C A SRCAP Missense_Mutation p.P1038T 0.18 unknown(0) TCGA-F7-A624-01 16 3073266 3073266 G - HCFC1R1 Frame_Shift_Del p.M84* 0.22 TCGA-F7-A624-01 16 30735661 30735661 G A SRCAP Missense_Mutation p.G1639E 0.23 probably_damaging(0.92) TCGA-F7-A624-01 16 3077433 3077433 G A THOC6 Missense_Mutation p.V293M 0.23 deleterious(0.01) possibly_damaging(0.769) TCGA-F7-A624-01 16 30794696 30794696 T C ZNF629 Missense_Mutation p.Y318C 0.26 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 16 30794875 30794875 G A ZNF629 Silent p.G258G 0.27 TCGA-F7-A624-01 16 30997480 30997480 T C HSD3B7 Missense_Mutation p.F93L 0.34 tolerated(0.14) benign(0.038) TCGA-F7-A624-01 16 30999363 30999363 G A HSD3B7 Silent p.T323T 0.25 TCGA-F7-A624-01 16 31201699 31201699 T C FUS Silent p.G424G 0.24 TCGA-F7-A624-01 16 31235598 31235598 C T TRIM72 Missense_Mutation p.P319L 0.17 tolerated(0.22) probably_damaging(0.967) TCGA-F7-A624-01 16 31435825 31435825 C T ITGAD Missense_Mutation p.A1100V 0.23 tolerated(0.1) benign(0.035) TCGA-F7-A624-01 16 31497177 31497177 T C SLC5A2 Missense_Mutation p.V144A 0.21 tolerated(0.06) benign(0.044) TCGA-F7-A624-01 16 31500266 31500266 G A SLC5A2 Missense_Mutation p.G449D 0.07 tolerated(0.15) probably_damaging(0.909) TCGA-F7-A624-01 16 31501677 31501677 T C SLC5A2 Missense_Mutation p.F614L 0.12 tolerated(0.39) benign(0.009) TCGA-F7-A624-01 16 3169916 3169916 C T ZNF205 Missense_Mutation p.P419S 0.20 deleterious(0.03) probably_damaging(1) TCGA-F7-A624-01 16 3189024 3189024 T C ZNF213 Missense_Mutation p.W216R 0.15 deleterious(0.04) possibly_damaging(0.835) TCGA-F7-A624-01 16 3294277 3294277 C T MEFV Missense_Mutation p.R579H 0.29 tolerated(0.17) benign(0.003) TCGA-F7-A624-01 16 332825 332825 C T ARHGDIG 3'UTR 0.36 TCGA-F7-A624-01 16 3350059 3350059 A T TIGD7 Missense_Mutation p.S186T 0.29 tolerated(0.37) benign(0.187) TCGA-F7-A624-01 16 3367268 3367268 T C ZNF75A Missense_Mutation p.V97A 0.07 tolerated(0.87) benign(0.007) TCGA-F7-A624-01 16 3554830 3554830 A G CLUAP1 Missense_Mutation p.R45G 0.16 deleterious(0) probably_damaging(0.983) TCGA-F7-A624-01 16 3712055 3712055 G A TRAP1 Nonsense_Mutation p.Q625* 0.23 TCGA-F7-A624-01 16 3788663 3788663 T C CREBBP Missense_Mutation p.I1431V 0.31 unknown(0) TCGA-F7-A624-01 16 3790495 3790496 - A CREBBP Frame_Shift_Ins p.L1346Ffs*8 0.21 TCGA-F7-A624-01 16 3820641 3820641 G - CREBBP Frame_Shift_Del p.P937Rfs*61 0.21 TCGA-F7-A624-01 16 3830807 3830809 AGG - CREBBP In_Frame_Del p.P583del 0.29 TCGA-F7-A624-01 16 396838 396838 C T AXIN1 Missense_Mutation p.R63H 0.36 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 16 450236 450236 G A NME4 Missense_Mutation p.S153N 0.26 deleterious(0) probably_damaging(0.978) TCGA-F7-A624-01 16 460246 460246 C T DECR2 Missense_Mutation p.A114V 0.22 deleterious(0) probably_damaging(0.978) TCGA-F7-A624-01 16 4745140 4745142 AGA - NUDT16L1 In_Frame_Del p.K201del 0.28 TCGA-F7-A624-01 16 47494827 47494827 C T ITFG1 Missense_Mutation p.A44T 0.38 tolerated(0.47) benign(0.015) TCGA-F7-A624-01 16 4833691 4833691 C T SEPT12 Missense_Mutation p.D197N 0.24 deleterious(0.02) probably_damaging(1) TCGA-F7-A624-01 16 48596173 48596173 C A N4BP1 Silent p.V127V 0.22 TCGA-F7-A624-01 16 49670391 49670391 C T ZNF423 Missense_Mutation p.C891Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 16 50332907 50332907 C A ADCY7 Nonsense_Mutation p.C347* 0.29 TCGA-F7-A624-01 16 50346906 50346906 T C ADCY7 Missense_Mutation p.C904R 0.14 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 16 50707482 50707482 G A SNX20 Silent p.G262G 0.22 TCGA-F7-A624-01 16 50815236 50815236 T C CYLD Missense_Mutation p.F533S 0.32 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 16 5083689 5083689 C T NAGPA Missense_Mutation p.A43T 0.27 benign(0.002) TCGA-F7-A624-01 16 53191364 53191364 C T CHD9 Nonsense_Mutation p.Q455* 0.10 TCGA-F7-A624-01 16 53330939 53330939 G C CHD9 Missense_Mutation p.R1861T 0.23 benign(0.03) TCGA-F7-A624-01 16 53331006 53331006 G C CHD9 Missense_Mutation p.L1883F 0.23 probably_damaging(1) TCGA-F7-A624-01 16 53859936 53859936 C T FTO Missense_Mutation p.S95F 0.22 deleterious(0) probably_damaging(0.984) TCGA-F7-A624-01 16 54966323 54966323 G A IRX5 Intron 0.19 TCGA-F7-A624-01 16 54967744 54967744 G A IRX5 Missense_Mutation p.D471N 0.20 tolerated(0.14) unknown(0) TCGA-F7-A624-01 16 55846878 55846878 A G CES1 Silent p.N341N 0.31 TCGA-F7-A624-01 16 56441904 56441904 A G AMFR Missense_Mutation p.M213T 0.33 deleterious(0.01) benign(0.011) TCGA-F7-A624-01 16 56500103 56500103 G A OGFOD1 Missense_Mutation p.R163Q 0.07 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 16 56519603 56519603 T A BBS2 Missense_Mutation p.D653V 0.21 deleterious(0) probably_damaging(0.913) TCGA-F7-A624-01 16 56672672 56672672 G A MT1A Missense_Mutation p.A8T 0.21 tolerated(0.45) unknown(0) TCGA-F7-A624-01 16 57153532 57153532 G A CPNE2 Silent p.L217L 0.10 TCGA-F7-A624-01 16 57255241 57255241 G - RSPRY1 Frame_Shift_Del p.V360Yfs*6 0.25 TCGA-F7-A624-01 16 58220736 58220736 G A CSNK2A2 Nonsense_Mutation p.R81* 0.22 TCGA-F7-A624-01 16 58752199 58752199 T C GOT2 Missense_Mutation p.I201M 0.12 tolerated(0.21) benign(0.013) TCGA-F7-A624-01 16 599378 599378 C T CAPN15 Silent p.Y583Y 0.29 TCGA-F7-A624-01 16 66603929 66603930 - T CMTM1 Frame_Shift_Ins p.I178Yfs*21 0.22 TCGA-F7-A624-01 16 67195837 67195837 T A FBXL8 Missense_Mutation p.I50N 0.25 deleterious(0) probably_damaging(0.934) TCGA-F7-A624-01 16 67197515 67197515 T C FBXL8 Missense_Mutation p.L306P 0.28 deleterious(0) possibly_damaging(0.902) TCGA-F7-A624-01 16 67200484 67200484 A G HSF4 Silent p.P195P 0.21 TCGA-F7-A624-01 16 67263713 67263713 C T FHOD1 Missense_Mutation p.R1132H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 16 67264368 67264368 G A FHOD1 Missense_Mutation p.A967V 0.24 tolerated(0.09) benign(0.013) TCGA-F7-A624-01 16 67305080 67305080 G A SLC9A5 Nonsense_Mutation p.W886* 0.34 TCGA-F7-A624-01 16 67472484 67472484 A G ATP6V0D1 Missense_Mutation p.C335R 0.31 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 16 67645338 67645339 - A CTCF Frame_Shift_Ins p.T204Nfs*26 0.23 TCGA-F7-A624-01 16 67645477 67645477 A G CTCF Missense_Mutation p.N248D 0.24 tolerated(0.1) possibly_damaging(0.497) TCGA-F7-A624-01 16 67691737 67691737 C T ACD Missense_Mutation p.R495H 0.23 tolerated(0.22) benign(0.007) TCGA-F7-A624-01 16 67761766 67761766 C T RANBP10 Missense_Mutation p.G503D 0.25 tolerated(0.07) probably_damaging(0.976) TCGA-F7-A624-01 16 677624 677624 G A RAB40C 3'UTR 0.14 TCGA-F7-A624-01 16 67918762 67918762 C T NRN1L 5'UTR 0.17 TCGA-F7-A624-01 16 68014034 68014034 C T DPEP3 Missense_Mutation p.A109T 0.20 tolerated(0.09) benign(0.259) TCGA-F7-A624-01 16 68200872 68200872 T C NFATC3 Silent p.S576S 0.19 TCGA-F7-A624-01 16 683135 683135 T C WFIKKN1 Missense_Mutation p.V242A 0.35 deleterious(0) probably_damaging(0.993) TCGA-F7-A624-01 16 68961841 68961841 G A TANGO6 Missense_Mutation p.S833N 0.19 tolerated(0.19) benign(0.003) TCGA-F7-A624-01 16 69364834 69364834 C T COG8 Missense_Mutation p.A583T 0.30 tolerated(0.29) benign(0.005) TCGA-F7-A624-01 16 70010595 70010595 A G PDXDC2P RNA 0.18 TCGA-F7-A624-01 16 70011921 70011921 A G RP11-419C5.2 RNA 0.21 TCGA-F7-A624-01 16 70365775 70365776 GT - DDX19B Frame_Shift_Del p.A394Pfs*4 0.19 TCGA-F7-A624-01 16 70497604 70497604 T A FUK Missense_Mutation p.V54E 0.31 deleterious(0) probably_damaging(0.976) TCGA-F7-A624-01 16 70694150 70694150 T C IL34 3'UTR 0.27 TCGA-F7-A624-01 16 72093018 72093018 T C HP Missense_Mutation p.Y125H 0.20 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 16 72821729 72821729 G A ZFHX3 Silent p.S3482S 0.21 TCGA-F7-A624-01 16 72828213 72828213 T C ZFHX3 Missense_Mutation p.K2790E 0.07 unknown(0) TCGA-F7-A624-01 16 72829090 72829090 C T ZFHX3 Silent p.S2497S 0.27 TCGA-F7-A624-01 16 74695112 74695112 T C RFWD3 Missense_Mutation p.D79G 0.25 deleterious_low_confidence(0.04) benign(0.037) TCGA-F7-A624-01 16 74706328 74706329 GA - MLKL 3'UTR 0.28 TCGA-F7-A624-01 16 74985406 74985406 G A WDR59 Silent p.D92D 0.29 TCGA-F7-A624-01 16 75512863 75512863 G A CHST6 Silent p.Y288Y 0.22 TCGA-F7-A624-01 16 75563688 75563688 G A CHST5 Missense_Mutation p.R199C 0.26 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 16 75602095 75602095 T C GABARAPL2 Missense_Mutation p.V84A 0.26 deleterious(0) benign(0.172) TCGA-F7-A624-01 16 75681828 75681828 T C TERF2IP Silent p.H16H 0.23 TCGA-F7-A624-01 16 77401513 77401513 T C ADAMTS18 Silent p.V201V 0.19 TCGA-F7-A624-01 16 774145 774145 G T CCDC78 Silent p.P338P 0.18 TCGA-F7-A624-01 16 774151 774151 T C CCDC78 Silent p.P336P 0.31 TCGA-F7-A624-01 16 775077 775077 C T CCDC78 Splice_Site p.X187_splice 0.21 TCGA-F7-A624-01 16 780544 780544 G A NARFL Missense_Mutation p.A435V 0.22 tolerated(0.16) benign(0.005) TCGA-F7-A624-01 16 78064610 78064610 C T CLEC3A Missense_Mutation p.R165C 0.32 deleterious(0.04) possibly_damaging(0.79) TCGA-F7-A624-01 16 81187706 81187707 CT - PKD1L2 RNA 0.29 TCGA-F7-A624-01 16 815293 815293 C - MSLN Frame_Shift_Del p.Y234Tfs*78 0.33 TCGA-F7-A624-01 16 81929426 81929426 G A PLCG2 Missense_Mutation p.G363R 0.25 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 16 83520084 83520084 A G CDH13 Missense_Mutation p.T309A 0.30 deleterious(0) benign(0.442) TCGA-F7-A624-01 16 836088 836088 G - RPUSD1 Frame_Shift_Del p.R268Gfs*62 0.36 TCGA-F7-A624-01 16 84163962 84163962 G A HSDL1 Missense_Mutation p.R99W 0.06 deleterious(0) probably_damaging(0.964) TCGA-F7-A624-01 16 84203766 84203766 T C DNAAF1 Silent p.A444A 0.10 TCGA-F7-A624-01 16 84495409 84495409 C T ATP2C2 Silent p.C857C 0.24 TCGA-F7-A624-01 16 84529368 84529368 T C TLDC1 Missense_Mutation p.N102S 0.23 tolerated(0.78) benign(0.001) TCGA-F7-A624-01 16 84806196 84806196 T C USP10 Missense_Mutation p.V683A 0.08 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 16 84900593 84900593 C T CRISPLD2 Missense_Mutation p.P267L 0.25 deleterious(0.01) benign(0.019) TCGA-F7-A624-01 16 86544993 86544993 C T FOXF1 Missense_Mutation p.S273L 0.32 deleterious_low_confidence(0.04) benign(0.049) TCGA-F7-A624-01 16 8722955 8722955 A G METTL22 Missense_Mutation p.I168V 0.25 tolerated(1) benign(0.006) TCGA-F7-A624-01 16 87678537 87678537 C - JPH3 Frame_Shift_Del p.L354Cfs*117 0.23 TCGA-F7-A624-01 16 88052189 88052189 G A BANP Missense_Mutation p.E263K 0.20 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 16 89187260 89187260 A G ACSF3 Missense_Mutation p.N393S 0.09 tolerated(0.3) benign(0.021) TCGA-F7-A624-01 16 89346399 89346399 G A ANKRD11 Missense_Mutation p.A2184V 0.15 benign(0.169) TCGA-F7-A624-01 16 89348957 89348957 G A ANKRD11 Silent p.D1331D 0.26 TCGA-F7-A624-01 16 89603315 89603315 C T SPG7 Intron 0.21 TCGA-F7-A624-01 16 8989584 8989584 A G USP7 Missense_Mutation p.V945A 0.24 tolerated(0.84) benign(0.043) TCGA-F7-A624-01 16 89916916 89916916 G A SPIRE2 Missense_Mutation p.V165M 0.46 deleterious(0.03) possibly_damaging(0.733) TCGA-F7-A624-01 16 90015943 90015943 T C DEF8 Silent p.L24L 0.25 TCGA-F7-A624-01 16 90095731 90095731 G A C16orf3 Missense_Mutation p.A7V 0.26 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-F7-A624-01 17 10101649 10101649 C T GAS7 Missense_Mutation p.G20E 0.10 deleterious(0.01) possibly_damaging(0.589) TCGA-F7-A624-01 17 10216005 10216005 C T MYH13 Silent p.S1417S 0.17 TCGA-F7-A624-01 17 10415172 10415172 C T MYH1 Missense_Mutation p.G467D 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 17 10429085 10429085 C T MYH2 Silent p.E1432E 0.21 TCGA-F7-A624-01 17 10549118 10549118 C G MYH3 Silent p.G349G 0.20 TCGA-F7-A624-01 17 10600695 10600695 A G SCO1 Missense_Mutation p.F44L 0.33 tolerated_low_confidence(0.61) benign(0) TCGA-F7-A624-01 17 10728533 10728533 G T PIRT 3'UTR 0.28 TCGA-F7-A624-01 17 11738013 11738013 A G DNAH9 Missense_Mutation p.E3102G 0.26 benign(0.371) TCGA-F7-A624-01 17 11872631 11872631 A G DNAH9 Silent p.T4416T 0.22 TCGA-F7-A624-01 17 12905677 12905677 C T ELAC2 Splice_Site p.X407_splice 0.26 TCGA-F7-A624-01 17 1340185 1340185 C T CRK Nonsense_Mutation p.W169* 0.30 TCGA-F7-A624-01 17 1456400 1456400 T - PITPNA Frame_Shift_Del p.N32Mfs*13 0.20 TCGA-F7-A624-01 17 1486572 1486572 G A SLC43A2 Missense_Mutation p.R426W 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-F7-A624-01 17 1518310 1518310 G A SLC43A2 Silent p.S129S 0.15 TCGA-F7-A624-01 17 1554577 1554577 C A PRPF8 Silent p.T2226T 0.13 TCGA-F7-A624-01 17 15554474 15554474 G A RP11-385D13.1 Silent p.C150C 0.15 TCGA-F7-A624-01 17 1580919 1580919 G A PRPF8 Missense_Mutation p.R642C 0.37 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 17 15878301 15878301 G A ADORA2B Missense_Mutation p.R215H 0.31 deleterious(0.05) benign(0.007) TCGA-F7-A624-01 17 16256481 16256481 C T CENPV Silent p.P90P 0.29 TCGA-F7-A624-01 17 16347048 16347048 T C FAM211A Missense_Mutation p.T297A 0.20 deleterious(0) probably_damaging(0.987) TCGA-F7-A624-01 17 16365661 16365661 A G FAM211A Missense_Mutation p.Y96H 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-F7-A624-01 17 1648678 1648678 T C SERPINF2 Silent p.L52L 0.28 TCGA-F7-A624-01 17 16525525 16525525 T C ZNF624 3'UTR 0.17 TCGA-F7-A624-01 17 16526165 16526165 T C ZNF624 Missense_Mutation p.N679D 0.27 tolerated(0.7) probably_damaging(0.995) TCGA-F7-A624-01 17 17045965 17045965 T C MPRIP Silent p.F307F 0.29 TCGA-F7-A624-01 17 17106358 17106358 A T PLD6 Missense_Mutation p.I161N 0.19 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 17 17150805 17150805 A G COPS3 Missense_Mutation p.F403L 0.22 deleterious(0.03) benign(0.019) TCGA-F7-A624-01 17 17699643 17699643 G A RAI1 Silent p.K1127K 0.19 TCGA-F7-A624-01 17 17699907 17699907 T C RAI1 Silent p.S1215S 0.22 TCGA-F7-A624-01 17 18022349 18022349 G A MYO15A Missense_Mutation p.V79M 0.23 probably_damaging(0.991) TCGA-F7-A624-01 17 18054751 18054751 C T MYO15A Missense_Mutation p.S2566F 0.11 unknown(0) TCGA-F7-A624-01 17 18220641 18220641 G A SMCR8 Missense_Mutation p.S513N 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-F7-A624-01 17 18638255 18638255 C T TRIM16L Missense_Mutation p.R177C 0.12 deleterious(0) probably_damaging(0.967) TCGA-F7-A624-01 17 19232949 19232950 - A EPN2 Frame_Shift_Ins p.T470Nfs*19 0.24 TCGA-F7-A624-01 17 19284283 19284283 A G MAPK7 Missense_Mutation p.E254G 0.22 deleterious(0) unknown(0) TCGA-F7-A624-01 17 19470408 19470408 G A SLC47A1 Splice_Site p.X393_splice 0.06 TCGA-F7-A624-01 17 19645443 19645443 C T ALDH3A1 Missense_Mutation p.G188D 0.34 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 17 19861746 19861746 T C AKAP10 Missense_Mutation p.K153R 0.24 tolerated(0.52) benign(0.015) TCGA-F7-A624-01 17 19861847 19861847 T C AKAP10 Silent p.K119K 0.26 TCGA-F7-A624-01 17 2090120 2090120 G A SMG6 Silent p.L998L 0.16 TCGA-F7-A624-01 17 21319454 21319459 CCATCA - KCNJ12 In_Frame_Del p.T269_I270del 0.09 TCGA-F7-A624-01 17 2275762 2275762 A G SGSM2 Missense_Mutation p.K590E 0.31 tolerated(0.44) benign(0.062) TCGA-F7-A624-01 17 2323149 2323149 G A METTL16 3'UTR 0.28 TCGA-F7-A624-01 17 2577392 2577392 T C PAFAH1B1 Missense_Mutation p.V237A 0.30 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 17 2605231 2605231 A T CLUH Missense_Mutation p.V161D 0.21 tolerated(0.08) benign(0.162) TCGA-F7-A624-01 17 26897899 26897899 A G PIGS Missense_Mutation p.V86A 0.23 tolerated(0.81) benign(0.026) TCGA-F7-A624-01 17 26962548 26962548 A G KIAA0100 Missense_Mutation p.L686P 0.35 tolerated(0.13) benign(0.045) TCGA-F7-A624-01 17 27579135 27579137 GAG - CRYBA1 In_Frame_Del p.G91del 0.21 TCGA-F7-A624-01 17 27957704 27957704 T C SSH2 3'UTR 0.28 TCGA-F7-A624-01 17 28445178 28445178 A G NSRP1 Missense_Mutation p.D34G 0.24 deleterious(0.01) possibly_damaging(0.742) TCGA-F7-A624-01 17 28890430 28890430 G T TBC1D29 Missense_Mutation p.R147M 0.25 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-F7-A624-01 17 2898720 2898720 T C RAP1GAP2 Missense_Mutation p.V335A 0.23 deleterious(0.02) probably_damaging(0.985) TCGA-F7-A624-01 17 29326291 29326291 A G RNF135 3'UTR 0.35 TCGA-F7-A624-01 17 29527540 29527540 C T NF1 Missense_Mutation p.A330V 0.20 deleterious(0.03) probably_damaging(0.97) TCGA-F7-A624-01 17 29645893 29645893 T - EVI2A Frame_Shift_Del p.I70Ffs*18 0.25 TCGA-F7-A624-01 17 30213066 30213066 A G UTP6 Silent p.Y212Y 0.28 TCGA-F7-A624-01 17 30821922 30821922 T C MYO1D Missense_Mutation p.H959R 0.19 tolerated(0.37) benign(0) TCGA-F7-A624-01 17 32964827 32964827 A G TMEM132E Missense_Mutation p.H844R 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-F7-A624-01 17 33430517 33430517 A T RAD51L3-RFFL Missense_Mutation p.V49D 0.19 deleterious_low_confidence(0) benign(0) TCGA-F7-A624-01 17 33679526 33679526 T C SLFN11 Missense_Mutation p.D852G 0.22 deleterious(0) probably_damaging(0.969) TCGA-F7-A624-01 17 33905124 33905124 G T PEX12 5'UTR 0.40 TCGA-F7-A624-01 17 33954513 33954513 A G AP2B1 Missense_Mutation p.N350D 0.24 deleterious(0) benign(0.272) TCGA-F7-A624-01 17 34249575 34249575 T C RDM1 Intron 0.19 TCGA-F7-A624-01 17 3438901 3438901 G A TRPV3 Silent p.F250F 0.24 TCGA-F7-A624-01 17 3513759 3513759 A G SHPK 3'UTR 0.31 TCGA-F7-A624-01 17 35388942 35388942 A G AATF Missense_Mutation p.M527V 0.24 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 17 35414001 35414001 T C AATF 3'UTR 0.34 TCGA-F7-A624-01 17 35582000 35582000 T C ACACA Silent p.S1129S 0.07 TCGA-F7-A624-01 17 36070601 36070601 G A HNF1B Silent p.S372S 0.28 TCGA-F7-A624-01 17 3627784 3627784 T C GSG2 Silent p.S185S 0.06 TCGA-F7-A624-01 17 3629040 3629040 A G GSG2 Missense_Mutation p.E604G 0.32 deleterious(0) probably_damaging(0.937) TCGA-F7-A624-01 17 3629072 3629072 A G GSG2 Missense_Mutation p.M615V 0.06 deleterious(0.01) benign(0.097) TCGA-F7-A624-01 17 36912171 36912171 A T PSMB3 Missense_Mutation p.E75V 0.21 deleterious(0.01) possibly_damaging(0.464) TCGA-F7-A624-01 17 37006475 37006475 A - RPL23 Intron 0.18 TCGA-F7-A624-01 17 37650864 37650864 G A CDK12 Missense_Mutation p.R779H 0.26 probably_damaging(0.999) TCGA-F7-A624-01 17 37866346 37866346 C T ERBB2 Silent p.R217R 0.34 TCGA-F7-A624-01 17 37883982 37883982 G A ERBB2 Silent p.S1151S 0.29 TCGA-F7-A624-01 17 38209791 38209791 A G MED24 Missense_Mutation p.Y21H 0.25 deleterious(0.01) benign(0.11) TCGA-F7-A624-01 17 38249565 38249565 A G THRA Missense_Mutation p.D468G 0.22 tolerated_low_confidence(0.54) benign(0) TCGA-F7-A624-01 17 3828691 3828691 G A ATP2A3 3'UTR 0.17 TCGA-F7-A624-01 17 38511548 38511548 A G RARA Missense_Mutation p.D349G 0.29 deleterious(0) probably_damaging(0.987) TCGA-F7-A624-01 17 38715180 38715180 T - CCR7 Frame_Shift_Del p.S9Afs*73 0.15 TCGA-F7-A624-01 17 38798596 38798596 A - SMARCE1 Intron 0.40 TCGA-F7-A624-01 17 38907488 38907488 T C KRT25 Missense_Mutation p.N254D 0.25 tolerated(0.63) probably_damaging(0.988) TCGA-F7-A624-01 17 38953467 38953467 C - KRT28 Frame_Shift_Del p.V253* 0.09 TCGA-F7-A624-01 17 39021207 39021207 T C KRT12 Missense_Mutation p.N220D 0.06 deleterious(0) possibly_damaging(0.875) TCGA-F7-A624-01 17 39084610 39084610 A G KRT23 Silent p.S267S 0.25 TCGA-F7-A624-01 17 39296500 39296500 G A KRTAP4-6 Silent p.C80C 0.06 TCGA-F7-A624-01 17 39579038 39579038 G T KRT37 Missense_Mutation p.H242N 0.11 deleterious(0) probably_damaging(0.986) TCGA-F7-A624-01 17 39580518 39580518 G A KRT37 Silent p.P86P 0.21 TCGA-F7-A624-01 17 39742887 39742887 C - KRT14 Frame_Shift_Del p.G67Afs*51 0.21 TCGA-F7-A624-01 17 3979924 3979924 G A ZZEF1 Intron 0.29 TCGA-F7-A624-01 17 39914749 39914749 T C JUP Missense_Mutation p.I559V 0.25 tolerated(0.11) benign(0.133) TCGA-F7-A624-01 17 39991346 39991346 G A NT5C3B Silent p.I68I 0.27 TCGA-F7-A624-01 17 40035067 40035067 C T ACLY Silent p.E792E 0.12 TCGA-F7-A624-01 17 40260095 40260095 A G DHX58 Missense_Mutation p.M237T 0.07 deleterious(0) probably_damaging(0.986) TCGA-F7-A624-01 17 40612914 40612915 - G ATP6V0A1 Frame_Shift_Ins p.E3Gfs*6 0.22 TCGA-F7-A624-01 17 40639195 40639195 A G ATP6V0A1 Missense_Mutation p.H285R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 17 4086789 4086789 A G ANKFY1 Missense_Mutation p.M661T 0.28 tolerated(0.64) benign(0.015) TCGA-F7-A624-01 17 40936504 40936504 C T WNK4 Silent p.Y359Y 0.29 TCGA-F7-A624-01 17 41166213 41166213 T C IFI35 Missense_Mutation p.I255T 0.25 deleterious(0) possibly_damaging(0.881) TCGA-F7-A624-01 17 42169798 42169798 A G HDAC5 Silent p.I291I 0.32 TCGA-F7-A624-01 17 42232288 42232288 A G C17orf53 Silent p.S543S 0.20 TCGA-F7-A624-01 17 42271917 42271917 G C ATXN7L3 Missense_Mutation p.S295C 0.22 deleterious(0) possibly_damaging(0.891) TCGA-F7-A624-01 17 42272027 42272027 G C ATXN7L3 Silent p.V258V 0.27 TCGA-F7-A624-01 17 42477017 42477017 G A GPATCH8 Missense_Mutation p.R810W 0.27 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-F7-A624-01 17 43003861 43003861 T C KIF18B Silent p.S791S 0.19 TCGA-F7-A624-01 17 43220866 43220866 G A ACBD4 Missense_Mutation p.R295H 0.28 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-F7-A624-01 17 43227646 43227646 T - HEXIM1 3'UTR 0.13 TCGA-F7-A624-01 17 43322408 43322408 T C FMNL1 Silent p.I887I 0.08 TCGA-F7-A624-01 17 43474094 43474094 G A ARHGAP27 Missense_Mutation p.R331C 0.12 deleterious(0) possibly_damaging(0.847) TCGA-F7-A624-01 17 43912149 43912149 A G CRHR1 3'UTR 0.22 TCGA-F7-A624-01 17 44111533 44111533 G A KANSL1 Missense_Mutation p.T887M 0.23 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 17 44954067 44954067 T C WNT9B Missense_Mutation p.Y353H 0.15 tolerated(0.24) probably_damaging(0.999) TCGA-F7-A624-01 17 45219268 45219268 A G CDC27 Missense_Mutation p.V507A 0.19 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 17 45266576 45266576 C - CDC27 5'Flank 0.24 TCGA-F7-A624-01 17 4534864 4534864 G - ALOX15 3'UTR 0.25 TCGA-F7-A624-01 17 45452040 45452040 A - EFCAB13 Frame_Shift_Del p.N362Ifs*5 0.11 TCGA-F7-A624-01 17 45689927 45689927 G A NPEPPS Missense_Mutation p.V733M 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-F7-A624-01 17 4576371 4576371 G A PELP1 Nonsense_Mutation p.Q639* 0.34 TCGA-F7-A624-01 17 46628440 46628440 C - HOXB3 Frame_Shift_Del p.S185Rfs*35 0.27 TCGA-F7-A624-01 17 47243541 47243541 C T B4GALNT2 Silent p.D400D 0.25 TCGA-F7-A624-01 17 47590424 47590424 G A NGFR 3'UTR 0.38 TCGA-F7-A624-01 17 47656067 47656067 C A NXPH3 Missense_Mutation p.P55H 0.32 deleterious(0.04) possibly_damaging(0.552) TCGA-F7-A624-01 17 47780584 47780584 A G SLC35B1 Missense_Mutation p.I243T 0.07 deleterious(0) probably_damaging(0.925) TCGA-F7-A624-01 17 48356598 48356598 C - TMEM92 Frame_Shift_Del p.P138Lfs*86 0.19 TCGA-F7-A624-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.34 TCGA-F7-A624-01 17 48457820 48457820 T C EME1 Silent p.S511S 0.18 TCGA-F7-A624-01 17 4859899 4859899 G A ENO3 Missense_Mutation p.V367M 0.28 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-F7-A624-01 17 48692731 48692731 G A CACNA1G Missense_Mutation p.C1590Y 0.25 tolerated(0.13) benign(0.372) TCGA-F7-A624-01 17 48819046 48819046 A - LUC7L3 Frame_Shift_Del p.I129Ffs*4 0.16 TCGA-F7-A624-01 17 48917822 48917825 GCAG ACA WFIKKN2 Frame_Shift_Del p.C395Afs*78 0.18 TCGA-F7-A624-01 17 4925505 4925505 G A KIF1C Missense_Mutation p.R710H 0.21 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-F7-A624-01 17 5084586 5084586 T C ZNF594 3'UTR 0.28 TCGA-F7-A624-01 17 5087489 5087489 G A ZNF594 Silent p.S21S 0.30 TCGA-F7-A624-01 17 51900745 51900745 G A KIF2B Silent p.A117A 0.28 TCGA-F7-A624-01 17 5312177 5312177 G C NUP88 Missense_Mutation p.P245A 0.30 deleterious(0.02) probably_damaging(0.946) TCGA-F7-A624-01 17 54933949 54933949 A G DGKE Missense_Mutation p.K392R 0.19 tolerated(0.24) probably_damaging(0.999) TCGA-F7-A624-01 17 56164482 56164482 G A DYNLL2 Missense_Mutation p.A11T 0.22 tolerated(0.1) benign(0.02) TCGA-F7-A624-01 17 56355299 56355299 C T MPO Missense_Mutation p.V365I 0.28 tolerated(0.1) benign(0.015) TCGA-F7-A624-01 17 56557547 56557548 - G HSF5 Frame_Shift_Ins p.H211Pfs*19 0.25 TCGA-F7-A624-01 17 56565313 56565313 A G HSF5 Missense_Mutation p.L108P 0.27 deleterious(0.05) possibly_damaging(0.603) TCGA-F7-A624-01 17 58571911 58571911 A G APPBP2 Missense_Mutation p.Y99H 0.10 tolerated(0.19) benign(0.039) TCGA-F7-A624-01 17 59544957 59544957 G A TBX4 Missense_Mutation p.R163Q 0.28 tolerated(0.05) possibly_damaging(0.768) TCGA-F7-A624-01 17 60033826 60033826 T - MED13 Frame_Shift_Del p.S1833Vfs*16 0.20 TCGA-F7-A624-01 17 60813259 60813259 T C MARCH10 Intron 0.11 TCGA-F7-A624-01 17 60879103 60879103 T C MARCH10 5'UTR 0.33 TCGA-F7-A624-01 17 61574234 61574234 C T ACE Silent p.S1193S 0.25 TCGA-F7-A624-01 17 61769157 61769157 C T MAP3K3 Missense_Mutation p.T501M 0.26 deleterious(0) possibly_damaging(0.871) TCGA-F7-A624-01 17 61770959 61770959 C T MAP3K3 Missense_Mutation p.A599V 0.26 deleterious(0.04) possibly_damaging(0.713) TCGA-F7-A624-01 17 62036778 62036778 T C SCN4A Silent p.T622T 0.22 TCGA-F7-A624-01 17 62865264 62865264 A G LRRC37A3 Missense_Mutation p.L976P 0.19 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 17 6361008 6361008 G A PITPNM3 Missense_Mutation p.T842M 0.15 tolerated(0.23) benign(0.067) TCGA-F7-A624-01 17 6368022 6368022 G A PITPNM3 Missense_Mutation p.R654W 0.31 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 17 65026608 65026608 G A CACNG4 Missense_Mutation p.V158I 0.27 deleterious(0) possibly_damaging(0.908) TCGA-F7-A624-01 17 65714141 65714141 G A NOL11 Silent p.E26E 0.22 TCGA-F7-A624-01 17 65732044 65732044 T C NOL11 Missense_Mutation p.M320T 0.20 deleterious(0.01) benign(0.118) TCGA-F7-A624-01 17 65735667 65735667 G A NOL11 Silent p.K626K 0.27 TCGA-F7-A624-01 17 65936555 65936555 G T BPTF Missense_Mutation p.G2087V 0.29 probably_damaging(1) TCGA-F7-A624-01 17 66039096 66039096 C G KPNA2 Missense_Mutation p.P216R 0.26 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 17 6683941 6683941 C T FBXO39 Missense_Mutation p.R252W 0.25 tolerated(0.07) benign(0) TCGA-F7-A624-01 17 67029943 67029943 T C ABCA9 Missense_Mutation p.I400M 0.06 tolerated(0.08) benign(0.213) TCGA-F7-A624-01 17 6703349 6703349 G A TEKT1 Silent p.C418C 0.24 TCGA-F7-A624-01 17 695069 695069 T C RNMTL1 Silent p.S341S 0.09 TCGA-F7-A624-01 17 70120498 70120498 A G SOX9 Silent p.Q500Q 0.23 TCGA-F7-A624-01 17 71281934 71281934 C - CDC42EP4 Frame_Shift_Del p.E236Rfs*146 0.14 TCGA-F7-A624-01 17 71344855 71344855 G - SDK2 Frame_Shift_Del p.R2017Gfs*28 0.20 TCGA-F7-A624-01 17 71348618 71348618 C T SDK2 Missense_Mutation p.V1918M 0.24 tolerated(0.1) possibly_damaging(0.824) TCGA-F7-A624-01 17 72227104 72227104 A C TTYH2 Missense_Mutation p.D127A 0.21 deleterious(0.04) benign(0.102) TCGA-F7-A624-01 17 7256424 7256424 G T KCTD11 Missense_Mutation p.A55S 0.22 tolerated(0.55) benign(0.045) TCGA-F7-A624-01 17 72739307 72739307 A G RAB37 Missense_Mutation p.T101A 0.25 deleterious(0.01) possibly_damaging(0.815) TCGA-F7-A624-01 17 72840621 72840621 A G GRIN2C Missense_Mutation p.W793R 0.31 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 17 73038718 73038718 T - ATP5H Frame_Shift_Del p.T10Pfs*5 0.25 TCGA-F7-A624-01 17 73096565 73096565 C T SLC16A5 Silent p.D269D 0.12 TCGA-F7-A624-01 17 7318086 7318086 G A NLGN2 Missense_Mutation p.D255N 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-F7-A624-01 17 73262053 73262053 C T MRPS7 3'UTR 0.28 TCGA-F7-A624-01 17 73564757 73564757 G A LLGL2 Missense_Mutation p.A413T 0.22 tolerated(0.89) benign(0.001) TCGA-F7-A624-01 17 73647255 73647255 A G RECQL5 Intron 0.03 TCGA-F7-A624-01 17 73725372 73725373 - C ITGB4 Frame_Shift_Ins p.F201Lfs*15 0.34 TCGA-F7-A624-01 17 74005594 74005594 A G EVPL Missense_Mutation p.V1231A 0.27 deleterious(0.04) benign(0.025) TCGA-F7-A624-01 17 74077706 74077707 - G ZACN Frame_Shift_Ins p.L253Vfs*8 0.22 TCGA-F7-A624-01 17 74078499 74078499 G A EXOC7 3'UTR 0.35 TCGA-F7-A624-01 17 7412422 7412422 C T POLR2A Missense_Mutation p.P1209S 0.22 possibly_damaging(0.732) TCGA-F7-A624-01 17 7476073 7476073 C T SENP3 3'Flank 0.13 TCGA-F7-A624-01 17 74878310 74878310 G A MGAT5B Missense_Mutation p.A98T 0.35 tolerated(0.6) benign(0.002) TCGA-F7-A624-01 17 74878390 74878390 C T MGAT5B Intron 0.24 TCGA-F7-A624-01 17 75205426 75205426 C T SEC14L1 Silent p.C493C 0.25 TCGA-F7-A624-01 17 7558890 7558890 G A ATP1B2 Missense_Mutation p.A219T 0.30 tolerated(0.25) benign(0.031) TCGA-F7-A624-01 17 7577514 7577514 G A TP53 Missense_Mutation p.T256I 0.28 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 17 7577566 7577566 T C TP53 Missense_Mutation p.N239D 0.20 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 17 7609005 7609005 T C EFNB3 Missense_Mutation p.L30P 0.25 deleterious(0) probably_damaging(0.942) TCGA-F7-A624-01 17 76430135 76430135 T C DNAH17 Missense_Mutation p.Y4061C 0.23 possibly_damaging(0.879) TCGA-F7-A624-01 17 76491108 76491108 T C DNAH17 Missense_Mutation p.E1978G 0.17 benign(0.03) TCGA-F7-A624-01 17 76568831 76568831 A T DNAH17 Missense_Mutation p.I164N 0.17 benign(0.144) TCGA-F7-A624-01 17 76803168 76803168 G A USP36 Missense_Mutation p.T653M 0.27 tolerated(0.07) benign(0.008) TCGA-F7-A624-01 17 76867073 76867073 C G TIMP2 Missense_Mutation p.E83Q 0.30 tolerated(0.21) benign(0.095) TCGA-F7-A624-01 17 7702465 7702465 T C DNAH2 Silent p.P2868P 0.21 TCGA-F7-A624-01 17 77758181 77758181 C T CBX2 Silent p.S313S 0.18 TCGA-F7-A624-01 17 77984303 77984303 G T TBC1D16 Silent p.A145A 0.46 TCGA-F7-A624-01 17 78164614 78164614 G A CARD14 Silent p.K335K 0.20 TCGA-F7-A624-01 17 79089876 79089876 C A BAIAP2 Intron 0.38 TCGA-F7-A624-01 17 79099137 79099137 G A AATK Intron 0.27 TCGA-F7-A624-01 17 79426610 79426610 A G RP11-1055B8.7 Missense_Mutation p.Y1962C 0.09 probably_damaging(0.999) TCGA-F7-A624-01 17 79862964 79862964 C T PCYT2 Missense_Mutation p.V364I 0.29 tolerated(0.82) benign(0.404) TCGA-F7-A624-01 17 79875959 79875959 C T SIRT7 Missense_Mutation p.V17I 0.28 tolerated(0.2) benign(0.037) TCGA-F7-A624-01 17 79991386 79991386 G T RAC3 Missense_Mutation p.R120L 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F7-A624-01 17 80037120 80037120 C T FASN Missense_Mutation p.G2479S 0.07 deleterious(0.04) probably_damaging(0.964) TCGA-F7-A624-01 17 8138525 8138525 C T CTC1 Missense_Mutation p.V429I 0.24 tolerated(0.17) benign(0.053) TCGA-F7-A624-01 17 8197893 8197893 C T SLC25A35 Missense_Mutation p.G78D 0.15 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 17 8701401 8701401 A G MFSD6L Silent p.C346C 0.23 TCGA-F7-A624-01 17 8722450 8722450 T C PIK3R6 Missense_Mutation p.N648S 0.26 tolerated(1) benign(0) TCGA-F7-A624-01 17 8738683 8738683 T C PIK3R6 Silent p.T184T 0.29 TCGA-F7-A624-01 17 9066277 9066277 G A NTN1 Missense_Mutation p.R389H 0.31 deleterious(0) probably_damaging(0.995) TCGA-F7-A624-01 17 9631546 9631546 G A USP43 Missense_Mutation p.A871T 0.35 tolerated(0.93) benign(0.004) TCGA-F7-A624-01 17 9680546 9680546 T C DHRS7C Missense_Mutation p.I180V 0.13 tolerated(0.35) benign(0.074) TCGA-F7-A624-01 18 12340360 12340360 T C AFG3L2 Missense_Mutation p.Q607R 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-F7-A624-01 18 12674619 12674619 G A CEP76 Missense_Mutation p.A586V 0.29 tolerated(0.31) benign(0.441) TCGA-F7-A624-01 18 13087062 13087062 G A CEP192 Missense_Mutation p.G1888D 0.19 tolerated(1) benign(0.008) TCGA-F7-A624-01 18 13645592 13645592 A G LDLRAD4 Missense_Mutation p.N286S 0.29 tolerated_low_confidence(0.97) benign(0.004) TCGA-F7-A624-01 18 13746253 13746253 A - RNMT Frame_Shift_Del p.T394Hfs*19 0.21 TCGA-F7-A624-01 18 13826297 13826297 T C MC5R Missense_Mutation p.I178T 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-F7-A624-01 18 14478750 14478750 C T CXADRP3 RNA 0.27 TCGA-F7-A624-01 18 14763990 14763990 G A ANKRD30B Missense_Mutation p.A376T 0.19 deleterious(0.02) probably_damaging(0.979) TCGA-F7-A624-01 18 18548731 18548731 A G ROCK1 Splice_Site p.X1001_splice 0.18 TCGA-F7-A624-01 18 18608856 18608856 A G ROCK1 Silent p.D364D 0.22 TCGA-F7-A624-01 18 19423102 19423102 A G MIB1 Missense_Mutation p.N658S 0.32 tolerated(0.11) benign(0.004) TCGA-F7-A624-01 18 21123524 21123524 G A NPC1 Missense_Mutation p.R714C 0.29 deleterious(0) probably_damaging(0.985) TCGA-F7-A624-01 18 21136222 21136222 T C NPC1 Missense_Mutation p.I437M 0.23 tolerated(0.09) benign(0.058) TCGA-F7-A624-01 18 21751417 21751417 A - OSBPL1A Frame_Shift_Del p.F749Lfs*59 0.21 TCGA-F7-A624-01 18 22020584 22020584 T C IMPACT Splice_Site p.X164_splice 0.24 TCGA-F7-A624-01 18 22025367 22025367 T C IMPACT Missense_Mutation p.V202A 0.29 deleterious(0) benign(0.392) TCGA-F7-A624-01 18 24035851 24035851 C T KCTD1 Silent p.L210L 0.30 TCGA-F7-A624-01 18 28586928 28586928 A G DSC3 Silent p.S611S 0.17 TCGA-F7-A624-01 18 28602353 28602353 C T DSC3 Silent p.V297V 0.22 TCGA-F7-A624-01 18 28935124 28935124 G A DSG1 Missense_Mutation p.G989S 0.07 tolerated(0.36) probably_damaging(0.937) TCGA-F7-A624-01 18 28935292 28935292 G A DSG1 Missense_Mutation p.V1045M 0.27 deleterious(0.03) benign(0.002) TCGA-F7-A624-01 18 28991197 28991197 T C DSG4 Missense_Mutation p.I733T 0.06 tolerated(0.06) probably_damaging(0.994) TCGA-F7-A624-01 18 31803104 31803104 C T NOL4 Silent p.Q38Q 0.25 TCGA-F7-A624-01 18 32949530 32949530 A G ZNF396 Silent p.H219H 0.26 TCGA-F7-A624-01 18 34850864 34850864 C T CELF4 Silent p.P322P 0.22 TCGA-F7-A624-01 18 39584317 39584317 T C PIK3C3 Intron 0.24 TCGA-F7-A624-01 18 39617741 39617741 G A PIK3C3 Missense_Mutation p.R642H 0.23 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 18 39647368 39647368 G A PIK3C3 Missense_Mutation p.R847H 0.11 tolerated(0.2) probably_damaging(0.927) TCGA-F7-A624-01 18 44036619 44036619 A T RNF165 3'UTR 0.25 TCGA-F7-A624-01 18 44555088 44555088 A G TCEB3C Missense_Mutation p.Y376H 0.03 deleterious(0.04) probably_damaging(0.991) TCGA-F7-A624-01 18 47429119 47429119 C T MYO5B Missense_Mutation p.A886T 0.32 tolerated(0.1) possibly_damaging(0.843) TCGA-F7-A624-01 18 47810748 47810748 T C CXXC1 Missense_Mutation p.N406S 0.22 tolerated(0.18) benign(0.006) TCGA-F7-A624-01 18 48252422 48252422 A G MAPK4 Missense_Mutation p.Y315C 0.26 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 18 48510840 48510840 T C ELAC1 Missense_Mutation p.F178L 0.22 tolerated(0.11) benign(0.115) TCGA-F7-A624-01 18 50918137 50918137 C A DCC Silent p.T856T 0.23 TCGA-F7-A624-01 18 5423449 5423449 T C EPB41L3 Missense_Mutation p.I423V 0.27 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 18 55024150 55024150 A G ST8SIA3 Silent p.E103E 0.10 TCGA-F7-A624-01 18 55103988 55103988 A G ONECUT2 Missense_Mutation p.K347R 0.24 deleterious(0.04) probably_damaging(0.948) TCGA-F7-A624-01 18 55217920 55217920 C T FECH 3'UTR 0.23 TCGA-F7-A624-01 18 60241692 60241692 T C ZCCHC2 Missense_Mutation p.L793S 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-F7-A624-01 18 61154286 61154286 C T SERPINB5 Silent p.L92L 0.23 TCGA-F7-A624-01 18 61654228 61654228 C T SERPINB8 Missense_Mutation p.P281S 0.25 tolerated(1) benign(0.003) TCGA-F7-A624-01 18 61654293 61654293 G A SERPINB8 Missense_Mutation p.M302I 0.22 tolerated(0.18) benign(0.13) TCGA-F7-A624-01 18 645095 645095 C A CLUL1 Silent p.T465T 0.20 TCGA-F7-A624-01 18 65180745 65180745 G A DSEL Silent p.H377H 0.24 TCGA-F7-A624-01 18 66367677 66367677 T - TMX3 Frame_Shift_Del p.D120Mfs*14 0.24 TCGA-F7-A624-01 18 67345062 67345062 G A DOK6 Missense_Mutation p.A128T 0.07 tolerated(0.12) benign(0.099) TCGA-F7-A624-01 18 67562997 67562997 A G CD226 Missense_Mutation p.Y223H 0.21 tolerated(0.54) benign(0) TCGA-F7-A624-01 18 67812917 67812917 A G RTTN Silent p.V804V 0.06 TCGA-F7-A624-01 18 67992095 67992096 - A SOCS6 Frame_Shift_Ins p.N66Kfs*49 0.14 TCGA-F7-A624-01 18 7032981 7032981 A G LAMA1 Splice_Site p.X721_splice 0.33 TCGA-F7-A624-01 18 71816014 71816014 C T TIMM21 5'UTR 0.25 TCGA-F7-A624-01 18 72185802 72185802 C T CNDP2 Silent p.G379G 0.22 TCGA-F7-A624-01 18 72238438 72238438 G T CNDP1 Missense_Mutation p.Q258H 0.22 deleterious(0.01) probably_damaging(0.946) TCGA-F7-A624-01 18 72997953 72997953 C T TSHZ1 Silent p.Y152Y 0.25 TCGA-F7-A624-01 18 72999677 72999677 C T TSHZ1 Missense_Mutation p.A727V 0.09 deleterious(0) possibly_damaging(0.504) TCGA-F7-A624-01 18 74091854 74091854 G A ZNF516 Missense_Mutation p.S739L 0.16 tolerated(0.06) probably_damaging(0.996) TCGA-F7-A624-01 18 74620313 74620313 G A ZNF236 Missense_Mutation p.A777T 0.21 tolerated(0.28) benign(0.097) TCGA-F7-A624-01 18 74692305 74692305 A G RP11-862L9.3 5'Flank 0.30 TCGA-F7-A624-01 18 74728931 74728931 C T MBP Missense_Mutation p.G145R 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-F7-A624-01 18 77287657 77287657 C A NFATC1 3'UTR 0.29 TCGA-F7-A624-01 18 8720430 8720430 A G SOGA2 Missense_Mutation p.Q98R 0.10 deleterious(0.03) possibly_damaging(0.856) TCGA-F7-A624-01 18 8824861 8824861 A G SOGA2 Missense_Mutation p.Y1118C 0.26 tolerated(0.13) benign(0.132) TCGA-F7-A624-01 18 9275635 9275635 C T ANKRD12 Silent p.A1959A 0.24 TCGA-F7-A624-01 19 1004694 1004694 G A GRIN3B Silent p.P398P 0.18 TCGA-F7-A624-01 19 10079145 10079145 G A COL5A3 Silent p.L1410L 0.29 TCGA-F7-A624-01 19 10088132 10088132 G - COL5A3 Frame_Shift_Del p.P1048Lfs*96 0.22 TCGA-F7-A624-01 19 1012124 1012124 C A TMEM259 Missense_Mutation p.G261V 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 19 10220380 10220380 A G PPAN Missense_Mutation p.H196R 0.18 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 19 10247831 10247831 A G DNMT1 Silent p.Y1473Y 0.25 TCGA-F7-A624-01 19 10405307 10405307 G T ICAM5 Missense_Mutation p.G741C 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-F7-A624-01 19 1045192 1045192 C T ABCA7 Silent p.D469D 0.19 TCGA-F7-A624-01 19 10464742 10464742 A G TYK2 Missense_Mutation p.Y962H 0.31 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 19 10475301 10475301 G A TYK2 Silent p.H452H 0.26 TCGA-F7-A624-01 19 10670071 10670071 G A KRI1 Silent p.D392D 0.28 TCGA-F7-A624-01 19 1080085 1080085 C T HMHA1 Silent p.Y573Y 0.28 TCGA-F7-A624-01 19 10906067 10906067 A G DNM2 Missense_Mutation p.D383G 0.25 tolerated(0.21) benign(0.012) TCGA-F7-A624-01 19 1108811 1108811 G A SBNO2 Missense_Mutation p.R1195W 0.29 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 19 11107214 11107214 T C SMARCA4 Silent p.D602D 0.21 TCGA-F7-A624-01 19 11132435 11132435 A G SMARCA4 Missense_Mutation p.H884R 0.17 benign(0.348) TCGA-F7-A624-01 19 11304261 11304261 T C KANK2 Silent p.P165P 0.34 TCGA-F7-A624-01 19 11532352 11532352 T C CCDC151 Missense_Mutation p.N528S 0.24 tolerated(0.16) benign(0.004) TCGA-F7-A624-01 19 11541547 11541547 T C CCDC151 Missense_Mutation p.K139R 0.27 tolerated(0.3) benign(0.149) TCGA-F7-A624-01 19 11545754 11545754 C G CCDC151 Missense_Mutation p.K28N 0.21 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-F7-A624-01 19 11545917 11545917 C G CCDC151 5'UTR 0.23 TCGA-F7-A624-01 19 11832719 11832719 G A ZNF823 Nonsense_Mutation p.R544* 0.18 TCGA-F7-A624-01 19 11959724 11959724 T C ZNF439 5'UTR 0.22 TCGA-F7-A624-01 19 11979202 11979202 T C ZNF439 Missense_Mutation p.C440R 0.11 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 19 12223763 12223763 T G ZNF788 Silent p.T467T 0.11 TCGA-F7-A624-01 19 12460905 12460905 A G ZNF442 Silent p.S498S 0.08 TCGA-F7-A624-01 19 1254932 1254932 G A MIDN Missense_Mutation p.S243N 0.20 tolerated(0.17) benign(0.213) TCGA-F7-A624-01 19 12738816 12738816 A G ZNF791 Missense_Mutation p.K158R 0.11 tolerated(0.08) benign(0.226) TCGA-F7-A624-01 19 12822153 12822153 C T TNPO2 Silent p.A358A 0.22 TCGA-F7-A624-01 19 12995742 12995742 G A KLF1 Missense_Mutation p.S349L 0.33 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 19 1299893 1299893 C T EFNA2 Silent p.C197C 0.24 TCGA-F7-A624-01 19 13223788 13223788 A G TRMT1 Missense_Mutation p.F227L 0.18 deleterious(0) possibly_damaging(0.714) TCGA-F7-A624-01 19 13264483 13264484 - C IER2 Frame_Shift_Ins p.P164Sfs*84 0.19 TCGA-F7-A624-01 19 13373574 13373574 T - CACNA1A Frame_Shift_Del p.T1355Pfs*16 0.19 TCGA-F7-A624-01 19 13423545 13423545 T C CACNA1A Missense_Mutation p.K536E 0.24 possibly_damaging(0.801) TCGA-F7-A624-01 19 14040401 14040401 T C CC2D1A Missense_Mutation p.Y880H 0.10 tolerated(0.81) benign(0.225) TCGA-F7-A624-01 19 14071164 14071164 T C DCAF15 Missense_Mutation p.V531A 0.30 deleterious(0.01) possibly_damaging(0.802) TCGA-F7-A624-01 19 14077341 14077341 G A RFX1 Missense_Mutation p.A618V 0.29 tolerated(0.08) possibly_damaging(0.742) TCGA-F7-A624-01 19 14231467 14231467 T C ASF1B Missense_Mutation p.N138S 0.11 tolerated(0.07) benign(0.135) TCGA-F7-A624-01 19 14515304 14515304 A G CD97 Missense_Mutation p.N520S 0.19 deleterious(0.04) possibly_damaging(0.755) TCGA-F7-A624-01 19 14517264 14517264 A C CD97 Missense_Mutation p.Q648P 0.21 tolerated(0.16) benign(0.119) TCGA-F7-A624-01 19 14589555 14589555 G T GIPC1 Missense_Mutation p.A264D 0.27 deleterious(0) probably_damaging(0.941) TCGA-F7-A624-01 19 14875330 14875330 C T EMR2 Silent p.L333L 0.18 TCGA-F7-A624-01 19 14938707 14938707 G A OR7A5 Missense_Mutation p.S116F 0.31 deleterious_low_confidence(0) benign(0.036) TCGA-F7-A624-01 19 15586853 15586853 A G PGLYRP2 Missense_Mutation p.S210P 0.30 tolerated(0.08) benign(0.003) TCGA-F7-A624-01 19 15739180 15739180 T C CYP4F8 RNA 0.19 TCGA-F7-A624-01 19 15740180 15740180 A G CYP4F8 RNA 0.12 TCGA-F7-A624-01 19 1581142 1581142 T C MBD3 Missense_Mutation p.N209S 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-F7-A624-01 19 1585075 1585075 G A MBD3 Silent p.Y83Y 0.28 TCGA-F7-A624-01 19 16035644 16035644 A G CYP4F11 Missense_Mutation p.F192L 0.29 deleterious(0.04) benign(0.327) TCGA-F7-A624-01 19 16259620 16259620 C T HSH2D Intron 0.31 TCGA-F7-A624-01 19 16515513 16515513 G A EPS15L1 Silent p.L438L 0.29 TCGA-F7-A624-01 19 16547765 16547765 C T EPS15L1 Missense_Mutation p.A119T 0.11 tolerated(0.73) benign(0.003) TCGA-F7-A624-01 19 16791318 16791318 C T TMEM38A Missense_Mutation p.A131V 0.27 tolerated(1) probably_damaging(1) TCGA-F7-A624-01 19 16973259 16973259 A G SIN3B Missense_Mutation p.I385M 0.27 tolerated(0.19) benign(0.017) TCGA-F7-A624-01 19 17343360 17343360 A G NR2F6 Missense_Mutation p.V339A 0.26 tolerated(0.06) benign(0.41) TCGA-F7-A624-01 19 17405647 17405647 A G ABHD8 Missense_Mutation p.F257L 0.20 tolerated(0.11) benign(0.028) TCGA-F7-A624-01 19 17412082 17412082 G A ABHD8 Missense_Mutation p.A115V 0.20 deleterious_low_confidence(0.01) benign(0.055) TCGA-F7-A624-01 19 17534318 17534318 G A MVB12A Missense_Mutation p.G142D 0.20 deleterious(0.02) probably_damaging(1) TCGA-F7-A624-01 19 17740047 17740047 A G UNC13A Splice_Site p.X1251_splice 0.17 TCGA-F7-A624-01 19 17758091 17758091 G A UNC13A Missense_Mutation p.A676V 0.38 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 19 17766809 17766809 G - UNC13A Frame_Shift_Del p.P389Qfs*115 0.31 TCGA-F7-A624-01 19 17835879 17835879 C A MAP1S Missense_Mutation p.P109T 0.31 tolerated(0.25) benign(0.027) TCGA-F7-A624-01 19 17922448 17922448 C T B3GNT3 Silent p.D212D 0.26 TCGA-F7-A624-01 19 17940942 17940942 G T JAK3 Missense_Mutation p.P1061Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 19 17994513 17994513 C T SLC5A5 Silent p.V422V 0.22 TCGA-F7-A624-01 19 1802636 1802636 T C ATP8B3 Missense_Mutation p.T305A 0.18 tolerated(0.66) benign(0.145) TCGA-F7-A624-01 19 18271310 18271310 T C PIK3R2 Missense_Mutation p.F118L 0.25 deleterious(0.03) possibly_damaging(0.644) TCGA-F7-A624-01 19 18279334 18279334 G T PIK3R2 Missense_Mutation p.G596W 0.21 deleterious(0) possibly_damaging(0.906) TCGA-F7-A624-01 19 18685871 18685871 T C UBA52 Missense_Mutation p.Y100H 0.09 deleterious(0.01) benign(0.023) TCGA-F7-A624-01 19 18710432 18710432 G A CRLF1 Missense_Mutation p.L114F 0.23 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 19 19221656 19221656 C T SLC25A42 Nonsense_Mutation p.Q310* 0.20 TCGA-F7-A624-01 19 19414550 19414550 C A SUGP1 Missense_Mutation p.K215N 0.24 deleterious(0) probably_damaging(0.99) TCGA-F7-A624-01 19 19455728 19455728 C T MAU2 Missense_Mutation p.T383I 0.25 tolerated(0.3) benign(0.158) TCGA-F7-A624-01 19 19651094 19651094 T C CILP2 Missense_Mutation p.F82S 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 19 19744652 19744652 T C GMIP Missense_Mutation p.H811R 0.29 tolerated(0.54) benign(0.028) TCGA-F7-A624-01 19 19744755 19744755 G T GMIP Missense_Mutation p.P777T 0.30 tolerated(0.26) benign(0.376) TCGA-F7-A624-01 19 19751335 19751335 T C GMIP Missense_Mutation p.D95G 0.29 deleterious(0) probably_damaging(0.966) TCGA-F7-A624-01 19 1986864 1986864 G A BTBD2 Missense_Mutation p.P461S 0.31 deleterious(0.01) possibly_damaging(0.889) TCGA-F7-A624-01 19 2043156 2043156 G A MKNK2 Missense_Mutation p.R154C 0.25 tolerated(0.08) probably_damaging(0.939) TCGA-F7-A624-01 19 2273081 2273081 G A OAZ1 Missense_Mutation p.E221K 0.19 deleterious(0.02) unknown(0) TCGA-F7-A624-01 19 22817191 22817191 G A ZNF492 5'UTR 0.28 TCGA-F7-A624-01 19 23542270 23542270 C T ZNF91 Missense_Mutation p.G1171S 0.16 deleterious_low_confidence(0) benign(0.003) TCGA-F7-A624-01 19 24310632 24310633 - T ZNF254 Frame_Shift_Ins p.W613Lfs*7 0.17 TCGA-F7-A624-01 19 2435009 2435009 T C LMNB2 Missense_Mutation p.Y282C 0.25 deleterious(0) probably_damaging(0.917) TCGA-F7-A624-01 19 2438423 2438423 T C LMNB2 Missense_Mutation p.K170E 0.36 deleterious(0.03) possibly_damaging(0.457) TCGA-F7-A624-01 19 2732884 2732884 G A SLC39A3 Silent p.G270G 0.21 TCGA-F7-A624-01 19 2737027 2737027 G A SLC39A3 Intron 0.35 TCGA-F7-A624-01 19 2763675 2763675 T C SGTA Missense_Mutation p.Y158C 0.33 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 19 2917426 2917426 A G ZNF57 Silent p.R269R 0.07 TCGA-F7-A624-01 19 30164827 30164827 G A PLEKHF1 Silent p.Q27Q 0.17 TCGA-F7-A624-01 19 307385 307385 G A MIER2 Silent p.A450A 0.23 TCGA-F7-A624-01 19 3119235 3119235 G A GNA11 Missense_Mutation p.R256Q 0.27 tolerated(0.34) benign(0.023) TCGA-F7-A624-01 19 31770175 31770175 G A TSHZ3 Missense_Mutation p.T175M 0.33 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 19 32843909 32843909 A - ZNF507 Frame_Shift_Del p.K59Sfs*7 0.18 TCGA-F7-A624-01 19 33604771 33604771 C T GPATCH1 Missense_Mutation p.A664V 0.16 tolerated(0.23) benign(0.002) TCGA-F7-A624-01 19 33697065 33697065 T C LRP3 Silent p.G463G 0.24 TCGA-F7-A624-01 19 34687588 34687588 G A LSM14A Missense_Mutation p.G112E 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-F7-A624-01 19 35085174 35085174 T C SCGB2B2 Missense_Mutation p.N51S 0.25 tolerated_low_confidence(0.12) possibly_damaging(0.874) TCGA-F7-A624-01 19 35450469 35450470 - A ZNF792 Frame_Shift_Ins p.C97Lfs*12 0.28 TCGA-F7-A624-01 19 35719090 35719090 T C FAM187B Missense_Mutation p.Y165C 0.26 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 19 35786521 35786521 C T MAG Nonsense_Mutation p.R18* 0.33 TCGA-F7-A624-01 19 36050968 36050968 C T ATP4A Silent p.V265V 0.29 TCGA-F7-A624-01 19 36210697 36210697 C T KMT2B Nonsense_Mutation p.R150* 0.20 TCGA-F7-A624-01 19 36222938 36222938 C - KMT2B Frame_Shift_Del p.R1858Vfs*37 0.33 TCGA-F7-A624-01 19 36271695 36271695 A G ARHGAP33 Missense_Mutation p.Q269R 0.21 tolerated_low_confidence(0.08) benign(0.145) TCGA-F7-A624-01 19 3641708 3641708 G A PIP5K1C Silent p.D594D 0.25 TCGA-F7-A624-01 19 36604715 36604715 G C POLR2I Missense_Mutation p.A107G 0.11 tolerated(1) benign(0.003) TCGA-F7-A624-01 19 37871240 37871240 G T ZNF527 Missense_Mutation p.M74I 0.17 tolerated(0.19) benign(0.001) TCGA-F7-A624-01 19 37879903 37879903 A G ZNF527 Missense_Mutation p.S318G 0.16 tolerated(0.06) benign(0.289) TCGA-F7-A624-01 19 38655419 38655419 C T SIPA1L3 Missense_Mutation p.R1361W 0.19 deleterious(0) probably_damaging(0.918) TCGA-F7-A624-01 19 38713318 38713318 G C DPF1 Missense_Mutation p.I47M 0.24 tolerated(0.47) probably_damaging(0.974) TCGA-F7-A624-01 19 39025414 39025415 - G RYR1 Frame_Shift_Ins p.A3774Gfs*37 0.27 TCGA-F7-A624-01 19 39087709 39087709 A G MAP4K1 Missense_Mutation p.W636R 0.26 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 19 40225074 40225074 A T CLC Missense_Mutation p.V51D 0.21 deleterious(0) benign(0.198) TCGA-F7-A624-01 19 4033130 4033130 G A PIAS4 Missense_Mutation p.E314K 0.22 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 19 40366395 40366395 G A FCGBP Silent p.C4613C 0.27 TCGA-F7-A624-01 19 40392046 40392046 G A FCGBP Silent p.C2780C 0.25 TCGA-F7-A624-01 19 40739643 40739643 C G AKT2 3'UTR 0.26 TCGA-F7-A624-01 19 40947495 40947495 G A SERTAD3 Missense_Mutation p.R165W 0.30 tolerated(0.06) benign(0.003) TCGA-F7-A624-01 19 40953925 40953925 T C BLVRB Silent p.T164T 0.27 TCGA-F7-A624-01 19 41089339 41089339 G T SHKBP1 Silent p.A332A 0.31 TCGA-F7-A624-01 19 41119873 41119873 A G LTBP4 Missense_Mutation p.N937S 0.12 deleterious(0) benign(0.121) TCGA-F7-A624-01 19 41122792 41122792 C T LTBP4 Intron 0.16 TCGA-F7-A624-01 19 41122815 41122815 T A LTBP4 Missense_Mutation p.Y1012N 0.33 deleterious(0.04) probably_damaging(0.948) TCGA-F7-A624-01 19 41135437 41135437 C A LTBP4 Silent p.P1618P 0.18 TCGA-F7-A624-01 19 41307039 41307039 T C EGLN2 Missense_Mutation p.Y188H 0.20 tolerated(0.4) possibly_damaging(0.459) TCGA-F7-A624-01 19 41594902 41594902 A G CYP2A13 Silent p.G83G 0.10 TCGA-F7-A624-01 19 41596072 41596072 T C CYP2A13 Missense_Mutation p.F155S 0.27 tolerated(0.08) possibly_damaging(0.625) TCGA-F7-A624-01 19 4171733 4171733 C T CREB3L3 Nonsense_Mutation p.R385* 0.24 TCGA-F7-A624-01 19 41745209 41745209 C A AXL Silent p.A425A 0.19 TCGA-F7-A624-01 19 41828524 41828524 C T CCDC97 Silent p.F312F 0.30 TCGA-F7-A624-01 19 41931841 41931841 C A B3GNT8 Missense_Mutation p.M281I 0.21 tolerated(0.22) benign(0.001) TCGA-F7-A624-01 19 42221417 42221417 C T CEACAM5 Silent p.P334P 0.25 TCGA-F7-A624-01 19 42510946 42510946 T C GRIK5 Missense_Mutation p.I630V 0.13 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 19 42583151 42583151 C T ZNF574 Silent p.C131C 0.23 TCGA-F7-A624-01 19 42744142 42744142 C T AC006486.9 Missense_Mutation p.A59T 0.39 deleterious(0) probably_damaging(0.991) TCGA-F7-A624-01 19 42794869 42794869 C - CIC Frame_Shift_Del p.A652Pfs*76 0.37 TCGA-F7-A624-01 19 42880472 42880472 C T MEGF8 Missense_Mutation p.R2628C 0.33 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 19 42933037 42933037 T C CXCL17 Nonstop_Mutation p.*120Wext*3 0.21 TCGA-F7-A624-01 19 43690520 43690520 A G PSG5 Missense_Mutation p.I13T 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-F7-A624-01 19 44103349 44103349 A G ZNF576 Missense_Mutation p.D151G 0.25 tolerated(0.48) benign(0.04) TCGA-F7-A624-01 19 44276197 44276197 C T KCNN4 Silent p.P258P 0.21 TCGA-F7-A624-01 19 4430557 4430557 C T CHAF1A Silent p.D622D 0.16 TCGA-F7-A624-01 19 44419190 44419190 T C ZNF45 Missense_Mutation p.E133G 0.20 tolerated(0.38) benign(0.118) TCGA-F7-A624-01 19 44513052 44513052 G A ZNF230 Silent p.T42T 0.26 TCGA-F7-A624-01 19 44891802 44891802 T C ZNF285 Missense_Mutation p.D202G 0.22 tolerated(0.17) benign(0.003) TCGA-F7-A624-01 19 45260945 45260945 A G BCL3 Missense_Mutation p.N286D 0.07 tolerated(0.08) possibly_damaging(0.709) TCGA-F7-A624-01 19 45567447 45567447 G A CLASRP Silent p.Q361Q 0.17 TCGA-F7-A624-01 19 45655588 45655588 T C NKPD1 Missense_Mutation p.T703A 0.18 tolerated(0.39) benign(0.002) TCGA-F7-A624-01 19 45854705 45854705 C - ERCC2 3'UTR 0.30 TCGA-F7-A624-01 19 45855501 45855501 T C ERCC2 Missense_Mutation p.Y719C 0.31 deleterious(0.02) possibly_damaging(0.571) TCGA-F7-A624-01 19 45889353 45889353 G A PPP1R13L Missense_Mutation p.A634V 0.17 deleterious(0.02) possibly_damaging(0.829) TCGA-F7-A624-01 19 45899945 45899945 C T PPP1R13L Silent p.A190A 0.22 TCGA-F7-A624-01 19 45912313 45912313 A G CD3EAP Missense_Mutation p.T363A 0.31 tolerated(0.7) benign(0.004) TCGA-F7-A624-01 19 46056679 46056679 T C OPA3 Intron 0.26 TCGA-F7-A624-01 19 46216140 46216140 T C FBXO46 Missense_Mutation p.E205G 0.47 tolerated(0.1) benign(0.075) TCGA-F7-A624-01 19 46341722 46341722 A G SYMPK Silent p.N413N 0.14 TCGA-F7-A624-01 19 4682811 4682811 A G DPP9 Missense_Mutation p.Y791H 0.36 deleterious(0.02) benign(0.25) TCGA-F7-A624-01 19 46879823 46879823 G A PPP5C Missense_Mutation p.A209T 0.18 deleterious(0.01) possibly_damaging(0.668) TCGA-F7-A624-01 19 47712512 47712512 C G SAE1 3'UTR 0.26 TCGA-F7-A624-01 19 47969130 47969130 G A SLC8A2 Silent p.I177I 0.27 TCGA-F7-A624-01 19 48519200 48519200 A C ELSPBP1 Missense_Mutation p.S87R 0.27 tolerated(0.06) benign(0.011) TCGA-F7-A624-01 19 48654515 48654515 G A LIG1 Missense_Mutation p.T183M 0.23 tolerated(0.34) benign(0.005) TCGA-F7-A624-01 19 48789363 48789363 A G ZNF114 Missense_Mutation p.N161S 0.34 tolerated(0.65) benign(0.292) TCGA-F7-A624-01 19 48956004 48956004 C T GRWD1 Missense_Mutation p.P355S 0.22 tolerated(0.07) probably_damaging(0.951) TCGA-F7-A624-01 19 49106822 49106822 G A FAM83E Missense_Mutation p.R369W 0.12 deleterious(0) probably_damaging(0.964) TCGA-F7-A624-01 19 49132517 49132517 A G SPHK2 Silent p.S484S 0.22 TCGA-F7-A624-01 19 49134122 49134122 C T DBP Missense_Mutation p.R317Q 0.36 deleterious(0.01) benign(0.056) TCGA-F7-A624-01 19 49167911 49167911 G A NTN5 Missense_Mutation p.R249W 0.23 deleterious(0) probably_damaging(0.99) TCGA-F7-A624-01 19 49244666 49244666 T A IZUMO1 Missense_Mutation p.E275V 0.20 tolerated(0.25) benign(0.195) TCGA-F7-A624-01 19 49245563 49245563 C T IZUMO1 Missense_Mutation p.R168Q 0.25 tolerated(0.1) possibly_damaging(0.572) TCGA-F7-A624-01 19 49377372 49377372 C A PPP1R15A Silent p.A294A 0.33 TCGA-F7-A624-01 19 49439398 49439398 G A DHDH Silent p.A104A 0.28 TCGA-F7-A624-01 19 4944201 4944202 GA - UHRF1 RNA 0.23 TCGA-F7-A624-01 19 49631148 49631148 G A PPFIA3 Missense_Mutation p.M6I 0.20 deleterious(0) probably_damaging(0.985) TCGA-F7-A624-01 19 49671539 49671539 T C TRPM4 Silent p.G157G 0.29 TCGA-F7-A624-01 19 49843452 49843452 C - CD37 Intron 0.16 TCGA-F7-A624-01 19 50208489 50208489 C T CPT1C Missense_Mutation p.R300C 0.25 deleterious(0.02) probably_damaging(0.956) TCGA-F7-A624-01 19 50247606 50247606 C A TSKS Missense_Mutation p.G415C 0.21 deleterious(0.02) probably_damaging(0.957) TCGA-F7-A624-01 19 50384596 50384596 C T TBC1D17 Missense_Mutation p.R131C 0.36 tolerated(0.07) probably_damaging(0.982) TCGA-F7-A624-01 19 5039883 5039883 T C KDM4B Missense_Mutation p.Y60H 0.14 probably_damaging(0.967) TCGA-F7-A624-01 19 5047569 5047569 T C KDM4B Missense_Mutation p.V172A 0.28 possibly_damaging(0.665) TCGA-F7-A624-01 19 50666224 50666224 T C IZUMO2 Silent p.K76K 0.26 TCGA-F7-A624-01 19 50861878 50861878 C G NAPSA Missense_Mutation p.A399P 0.28 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 19 50864944 50864944 T C NAPSA Silent p.G148G 0.05 TCGA-F7-A624-01 19 51021586 51021586 C T LRRC4B Missense_Mutation p.G462R 0.28 tolerated_low_confidence(0.32) benign(0.405) TCGA-F7-A624-01 19 51022098 51022098 G A LRRC4B Missense_Mutation p.S291L 0.17 tolerated(0.19) benign(0.063) TCGA-F7-A624-01 19 51191246 51191246 T C SHANK1 Missense_Mutation p.T748A 0.33 benign(0.014) TCGA-F7-A624-01 19 51226675 51226675 G T CLEC11A 5'UTR 0.19 TCGA-F7-A624-01 19 51363282 51363282 T C KLK3 Missense_Mutation p.W229R 0.27 deleterious(0) probably_damaging(0.988) TCGA-F7-A624-01 19 51883888 51883888 A G LIM2 Missense_Mutation p.F153L 0.28 tolerated(0.45) possibly_damaging(0.702) TCGA-F7-A624-01 19 51983803 51983803 G A CEACAM18 Missense_Mutation p.G151D 0.25 tolerated(0.08) possibly_damaging(0.695) TCGA-F7-A624-01 19 5208367 5208367 G A PTPRS Silent p.F1841F 0.17 TCGA-F7-A624-01 19 52130399 52130399 T C SIGLEC5 Intron 0.10 TCGA-F7-A624-01 19 52249085 52249085 T C FPR1 3'UTR 0.33 TCGA-F7-A624-01 19 52448704 52448704 A G ZNF613 Missense_Mutation p.H523R 0.30 tolerated(0.17) benign(0.021) TCGA-F7-A624-01 19 52537581 52537581 G A ZNF432 Missense_Mutation p.H451Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 19 52618702 52618702 C T ZNF616 Missense_Mutation p.S572N 0.32 deleterious(0.05) possibly_damaging(0.777) TCGA-F7-A624-01 19 52869218 52869218 A G ZNF610 Missense_Mutation p.Y196C 0.09 deleterious(0.04) benign(0.394) TCGA-F7-A624-01 19 52905201 52905201 A G ZNF528 Intron 0.37 TCGA-F7-A624-01 19 53058337 53058337 T C ZNF808 Missense_Mutation p.V723A 0.23 tolerated(1) benign(0.01) TCGA-F7-A624-01 19 53302746 53302746 A T ZNF28 3'UTR 0.18 TCGA-F7-A624-01 19 53302894 53302894 A G ZNF28 3'UTR 0.07 TCGA-F7-A624-01 19 53302978 53302978 A G ZNF28 Missense_Mutation p.V707A 0.28 tolerated(1) benign(0) TCGA-F7-A624-01 19 53303779 53303779 T G ZNF28 Missense_Mutation p.K440T 0.07 deleterious(0.03) benign(0.063) TCGA-F7-A624-01 19 53855647 53855647 T C ZNF845 Silent p.H573H 0.20 TCGA-F7-A624-01 19 53905357 53905357 C G ZNF765 Missense_Mutation p.Q19E 0.17 deleterious(0.04) possibly_damaging(0.489) TCGA-F7-A624-01 19 53945669 53945669 G A TPM3P9 RNA 0.30 TCGA-F7-A624-01 19 54081079 54081079 A T ZNF331 Missense_Mutation p.H422L 0.30 tolerated(0.8) benign(0.328) TCGA-F7-A624-01 19 54308536 54308536 A G NLRP12 Silent p.I804I 0.19 TCGA-F7-A624-01 19 54310864 54310864 A G NLRP12 Missense_Mutation p.C710R 0.26 tolerated(0.43) benign(0.001) TCGA-F7-A624-01 19 54598534 54598534 A G OSCAR 3'UTR 0.23 TCGA-F7-A624-01 19 54611747 54611747 C T NDUFA3 3'Flank 0.23 TCGA-F7-A624-01 19 54657010 54657010 C T CNOT3 Intron 0.26 TCGA-F7-A624-01 19 54802539 54802539 T C LILRA3 Missense_Mutation p.Y301C 0.39 deleterious(0) possibly_damaging(0.838) TCGA-F7-A624-01 19 54822643 54822643 G A LILRA5 Intron 0.25 TCGA-F7-A624-01 19 54930385 54930385 C T TTYH1 Silent p.C70C 0.12 TCGA-F7-A624-01 19 54965653 54965653 C A LENG8 Silent p.P157P 0.30 TCGA-F7-A624-01 19 55105247 55105247 G A LILRA1 Splice_Site 0.27 TCGA-F7-A624-01 19 55451630 55451630 G A NLRP7 Missense_Mutation p.T186M 0.21 deleterious(0.03) probably_damaging(0.937) TCGA-F7-A624-01 19 55592177 55592177 A G EPS8L1 Missense_Mutation p.H156R 0.26 tolerated(0.35) benign(0.116) TCGA-F7-A624-01 19 55593505 55593505 A G EPS8L1 Missense_Mutation p.Y316C 0.24 tolerated(0.07) benign(0.06) TCGA-F7-A624-01 19 55708058 55708058 C G PTPRH Missense_Mutation p.E697Q 0.35 possibly_damaging(0.688) TCGA-F7-A624-01 19 55915684 55915684 G A UBE2S Missense_Mutation p.A105V 0.10 deleterious(0) possibly_damaging(0.601) TCGA-F7-A624-01 19 5593976 5593976 C T SAFB2 Silent p.E711E 0.31 TCGA-F7-A624-01 19 56042676 56042676 C T SBK2 Missense_Mutation p.R97H 0.22 tolerated(0.09) benign(0.026) TCGA-F7-A624-01 19 56113819 56113819 A G ZNF524 Missense_Mutation p.H114R 0.29 deleterious(0.01) possibly_damaging(0.899) TCGA-F7-A624-01 19 56185344 56185344 G A U2AF2 Missense_Mutation p.M446I 0.19 tolerated(0.14) benign(0.119) TCGA-F7-A624-01 19 56244391 56244391 G A NLRP9 Missense_Mutation p.S269F 0.14 tolerated(0.06) benign(0.023) TCGA-F7-A624-01 19 56953025 56953025 T C ZNF667 Missense_Mutation p.K447E 0.09 tolerated(0.59) probably_damaging(0.996) TCGA-F7-A624-01 19 5778733 5778733 A G CATSPERD 3'UTR 0.18 TCGA-F7-A624-01 19 577939 577939 G A BSG Missense_Mutation p.R78H 0.28 deleterious(0.02) benign(0.376) TCGA-F7-A624-01 19 57954687 57954687 G - ZNF749 Frame_Shift_Del p.V58Yfs*9 0.16 TCGA-F7-A624-01 19 57955220 57955220 A G ZNF749 Missense_Mutation p.Y235C 0.20 tolerated(0.14) probably_damaging(0.98) TCGA-F7-A624-01 19 58018055 58018055 A - ZNF773 Frame_Shift_Del p.A199Pfs*41 0.22 TCGA-F7-A624-01 19 58145234 58145234 A G ZNF211 Intron 0.12 TCGA-F7-A624-01 19 5824275 5824275 C T NRTN Silent p.L33L 0.25 TCGA-F7-A624-01 19 58420945 58420945 A - ZNF417 Frame_Shift_Del p.F234Sfs*246 0.17 TCGA-F7-A624-01 19 58439140 58439140 A G ZNF418 Missense_Mutation p.Y137H 0.09 deleterious(0.04) probably_damaging(0.969) TCGA-F7-A624-01 19 58596148 58596148 C T ZSCAN18 Silent p.P535P 0.27 TCGA-F7-A624-01 19 58596693 58596693 C T ZSCAN18 Missense_Mutation p.A354T 0.32 tolerated(0.57) benign(0.001) TCGA-F7-A624-01 19 58806938 58806938 A - ZNF8 3'UTR 0.21 TCGA-F7-A624-01 19 58858380 58858380 C T A1BG 3'UTR 0.27 TCGA-F7-A624-01 19 58928590 58928590 T C ZNF584 Silent p.V235V 0.21 TCGA-F7-A624-01 19 59022657 59022657 G T SLC27A5 Silent p.A222A 0.38 TCGA-F7-A624-01 19 59074233 59074233 T C MZF1 Missense_Mutation p.K471E 0.36 tolerated(0.87) benign(0) TCGA-F7-A624-01 19 615973 615973 C T HCN2 Silent p.V723V 0.38 TCGA-F7-A624-01 19 619641 619641 T C POLRMT Missense_Mutation p.Y1004C 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-F7-A624-01 19 6732499 6732499 T C GPR108 Missense_Mutation p.Y332C 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 19 6850745 6850746 - G VAV1 Frame_Shift_Ins p.K732Rfs*38 0.21 TCGA-F7-A624-01 19 694923 694923 G - PRSS57 Frame_Shift_Del p.H43Tfs*51 0.27 TCGA-F7-A624-01 19 7083662 7083662 A - ZNF557 Frame_Shift_Del p.K402Nfs*40 0.10 TCGA-F7-A624-01 19 757839 757839 G A MISP Missense_Mutation p.R298H 0.24 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 19 7676687 7676687 C - CAMSAP3 Frame_Shift_Del p.P465Rfs*125 0.41 TCGA-F7-A624-01 19 7692197 7692197 A G XAB2 Missense_Mutation p.Y152H 0.22 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 19 7709636 7709636 A G STXBP2 Missense_Mutation p.N415S 0.25 deleterious(0.01) possibly_damaging(0.604) TCGA-F7-A624-01 19 7743445 7743445 A G CTD-3214H19.16 Missense_Mutation p.T21A 0.20 tolerated_low_confidence(0.11) benign(0.388) TCGA-F7-A624-01 19 7795312 7795312 C T CLEC4G Missense_Mutation p.A135T 0.20 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 19 7830854 7830854 A G CLEC4M Missense_Mutation p.Y182C 0.10 deleterious(0) unknown(0) TCGA-F7-A624-01 19 7964151 7964151 C T LRRC8E Silent p.G248G 0.29 TCGA-F7-A624-01 19 8369979 8369979 C T CD320 Silent p.V68V 0.26 TCGA-F7-A624-01 19 8389336 8389336 G T KANK3 Silent p.T793T 0.39 TCGA-F7-A624-01 19 8577283 8577283 T C ZNF414 Missense_Mutation p.N173S 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-F7-A624-01 19 868422 868422 T C MED16 Missense_Mutation p.N826S 0.15 tolerated(0.53) possibly_damaging(0.621) TCGA-F7-A624-01 19 8953875 8953875 C T MBD3L1 Missense_Mutation p.A174V 0.19 tolerated(0.07) benign(0.032) TCGA-F7-A624-01 19 9011372 9011372 A T MUC16 Missense_Mutation p.I12954N 0.28 probably_damaging(0.996) TCGA-F7-A624-01 19 9024886 9024886 T C MUC16 Missense_Mutation p.T12326A 0.24 benign(0.145) TCGA-F7-A624-01 19 9073349 9073349 T C MUC16 Silent p.S4699S 0.09 TCGA-F7-A624-01 19 9088668 9088668 T C MUC16 Silent p.E1049E 0.21 TCGA-F7-A624-01 19 9406018 9406018 A G ZNF699 3'UTR 0.14 TCGA-F7-A624-01 19 9406700 9406700 C T ZNF699 Silent p.S460S 0.19 TCGA-F7-A624-01 19 9644626 9644626 T C ZNF426 Missense_Mutation p.D45G 0.07 deleterious(0.01) benign(0.192) TCGA-F7-A624-01 19 9967507 9967507 C T OLFM2 Silent p.T221T 0.34 TCGA-F7-A624-01 1 100343222 100343222 A G AGL Silent p.E483E 0.23 TCGA-F7-A624-01 1 100527484 100527484 A G HIAT1 Silent p.E155E 0.15 TCGA-F7-A624-01 1 100534140 100534140 C G HIAT1 Missense_Mutation p.Q273E 0.19 tolerated(1) probably_damaging(0.973) TCGA-F7-A624-01 1 102270375 102270375 G T OLFM3 Missense_Mutation p.L266I 0.28 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 1 10231324 10231324 A G UBE4B Silent p.Q1154Q 0.23 TCGA-F7-A624-01 1 10386368 10386368 G T KIF1B Missense_Mutation p.G913W 0.25 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 1 10500429 10500429 A G APITD1 Missense_Mutation p.T79A 0.20 tolerated(0.19) benign(0.108) TCGA-F7-A624-01 1 109318958 109318958 A G STXBP3 Silent p.K199K 0.16 TCGA-F7-A624-01 1 109479734 109479734 C T CLCC1 Missense_Mutation p.A450T 0.26 tolerated(0.6) benign(0.062) TCGA-F7-A624-01 1 109793467 109793467 G A CELSR2 Missense_Mutation p.V256I 0.33 tolerated(0.06) probably_damaging(0.988) TCGA-F7-A624-01 1 109801625 109801625 G A CELSR2 Silent p.S1294S 0.26 TCGA-F7-A624-01 1 109804950 109804950 G A CELSR2 Silent p.E1476E 0.31 TCGA-F7-A624-01 1 109839460 109839460 G A MYBPHL Silent p.C225C 0.23 TCGA-F7-A624-01 1 111217120 111217120 C T KCNA3 Silent p.E104E 0.21 TCGA-F7-A624-01 1 111702064 111702064 T C CEPT1 Silent p.A134A 0.17 TCGA-F7-A624-01 1 11189816 11189816 T C MTOR Missense_Mutation p.N1898S 0.13 tolerated(1) benign(0.125) TCGA-F7-A624-01 1 111965594 111965594 A G OVGP1 Missense_Mutation p.V188A 0.06 tolerated(0.52) benign(0.012) TCGA-F7-A624-01 1 112018646 112018646 A G C1orf162 5'UTR 0.13 TCGA-F7-A624-01 1 112269753 112269753 C T FAM212B Missense_Mutation p.R244H 0.23 tolerated(0.13) probably_damaging(0.982) TCGA-F7-A624-01 1 113212764 113212764 G A CAPZA1 3'UTR 0.26 TCGA-F7-A624-01 1 113456324 113456324 T A SLC16A1 3'UTR 0.44 TCGA-F7-A624-01 1 113638610 113638610 A G LRIG2 Silent p.A306A 0.19 TCGA-F7-A624-01 1 113655205 113655205 T C LRIG2 Missense_Mutation p.W635R 0.22 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 1 114133184 114133184 A G MAGI3 Missense_Mutation p.D281G 0.32 deleterious(0.01) probably_damaging(0.939) TCGA-F7-A624-01 1 114440480 114440480 C G AP4B1 Missense_Mutation p.E428D 0.27 tolerated(0.21) benign(0.007) TCGA-F7-A624-01 1 114484037 114484037 T C HIPK1 Silent p.V344V 0.23 TCGA-F7-A624-01 1 114523793 114523793 T C OLFML3 Missense_Mutation p.V208A 0.23 tolerated(0.76) benign(0.213) TCGA-F7-A624-01 1 1154154 1154154 T C SDF4 Missense_Mutation p.D244G 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 1 116579933 116579933 G T SLC22A15 Silent p.R365R 0.22 TCGA-F7-A624-01 1 116607106 116607106 A T SLC22A15 Missense_Mutation p.I448F 0.28 deleterious(0.01) possibly_damaging(0.58) TCGA-F7-A624-01 1 1168029 1168029 C T B3GALT6 Missense_Mutation p.A124V 0.44 tolerated(0.23) benign(0.227) TCGA-F7-A624-01 1 117150895 117150895 C T IGSF3 Silent p.P297P 0.19 TCGA-F7-A624-01 1 11718437 11718437 G A FBXO44 Missense_Mutation p.V127I 0.23 deleterious(0.01) possibly_damaging(0.854) TCGA-F7-A624-01 1 11808623 11808623 A G AGTRAP Missense_Mutation p.Y107C 0.14 deleterious(0) probably_damaging(0.984) TCGA-F7-A624-01 1 118497252 118497252 T C WDR3 Splice_Site p.X803_splice 0.19 TCGA-F7-A624-01 1 119575854 119575854 C T WARS2 Missense_Mutation p.V255M 0.10 tolerated(0.06) benign(0.097) TCGA-F7-A624-01 1 119925634 119925634 A T HAO2 Silent p.A76A 0.32 TCGA-F7-A624-01 1 120437837 120437837 A G ADAM30 Missense_Mutation p.Y375H 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-F7-A624-01 1 12460258 12460258 T C VPS13D Silent p.G3885G 0.25 TCGA-F7-A624-01 1 1274021 1274021 G A DVL1 Missense_Mutation p.A382V 0.32 tolerated(0.53) benign(0.023) TCGA-F7-A624-01 1 1277865 1277865 C T DVL1 Splice_Site p.X81_splice 0.36 TCGA-F7-A624-01 1 12836112 12836112 C A PRAMEF12 Missense_Mutation p.F238L 0.21 deleterious(0.01) probably_damaging(0.916) TCGA-F7-A624-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.32 TCGA-F7-A624-01 1 12921350 12921350 A G PRAMEF2 Missense_Mutation p.T381A 0.06 tolerated(0.05) probably_damaging(0.99) TCGA-F7-A624-01 1 1403878 1403878 C T ATAD3C Missense_Mutation p.P402S 0.19 tolerated_low_confidence(0.09) benign(0.005) TCGA-F7-A624-01 1 14105907 14105907 A G PRDM2 Silent p.V539V 0.12 TCGA-F7-A624-01 1 14107943 14107943 T C PRDM2 Missense_Mutation p.V1218A 0.21 unknown(0) TCGA-F7-A624-01 1 144852337 144852337 T C PDE4DIP 3'UTR 0.10 TCGA-F7-A624-01 1 144994901 144994901 C T PDE4DIP 5'UTR 0.19 TCGA-F7-A624-01 1 145558913 145558913 C T ANKRD35 Nonsense_Mutation p.R178* 0.21 TCGA-F7-A624-01 1 1458248 1458248 C T ATAD3A Missense_Mutation p.T340M 0.27 deleterious(0) possibly_damaging(0.88) TCGA-F7-A624-01 1 146765320 146765320 A C CHD1L Missense_Mutation p.D807A 0.17 deleterious(0.01) possibly_damaging(0.824) TCGA-F7-A624-01 1 147096415 147096415 C T BCL9 Silent p.G1312G 0.24 TCGA-F7-A624-01 1 149949445 149949445 T C OTUD7B Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-F7-A624-01 1 150201458 150201458 C T ANP32E Missense_Mutation p.G147E 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 1 150529726 150529726 G A ADAMTSL4 Silent p.P654P 0.09 TCGA-F7-A624-01 1 150784504 150784504 G A ARNT Missense_Mutation p.S788L 0.34 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-F7-A624-01 1 150936071 150936071 A G SETDB1 Missense_Mutation p.I1175V 0.20 tolerated(0.19) benign(0.401) TCGA-F7-A624-01 1 151021320 151021320 A T C1orf56 Missense_Mutation p.M333L 0.22 deleterious(0.01) benign(0.14) TCGA-F7-A624-01 1 151298751 151298751 G T PI4KB 5'UTR 0.18 TCGA-F7-A624-01 1 151677509 151677509 G - CELF3 Intron 0.28 TCGA-F7-A624-01 1 151787617 151787617 G T RORC Missense_Mutation p.L195I 0.45 tolerated(0.22) benign(0.017) TCGA-F7-A624-01 1 151993729 151993729 G A NBPF18P RNA 0.19 TCGA-F7-A624-01 1 152083774 152083774 T C TCHH Missense_Mutation p.E640G 0.28 unknown(0) TCGA-F7-A624-01 1 152187860 152187860 C T HRNR Missense_Mutation p.G2082D 0.24 unknown(0) TCGA-F7-A624-01 1 152188533 152188533 T C HRNR Missense_Mutation p.S1858G 0.03 unknown(0) TCGA-F7-A624-01 1 152283287 152283287 A T FLG Missense_Mutation p.S1359T 0.24 benign(0.418) TCGA-F7-A624-01 1 152975621 152975621 A G SPRR3 Missense_Mutation p.H42R 0.12 tolerated(0.1) possibly_damaging(0.697) TCGA-F7-A624-01 1 153390569 153390569 C A S100A7A Missense_Mutation p.T4N 0.23 deleterious(0.03) possibly_damaging(0.815) TCGA-F7-A624-01 1 153744404 153744404 C T INTS3 Silent p.L895L 0.24 TCGA-F7-A624-01 1 153909067 153909067 T C DENND4B Missense_Mutation p.Y797C 0.27 deleterious(0) benign(0) TCGA-F7-A624-01 1 153941609 153941609 G - CREB3L4 Frame_Shift_Del p.E128Kfs*6 0.21 TCGA-F7-A624-01 1 153954853 153954853 C T RAB13 Intron 0.14 TCGA-F7-A624-01 1 154072543 154072543 T C NUP210L Silent p.T632T 0.27 TCGA-F7-A624-01 1 154223759 154223759 A T UBAP2L Nonsense_Mutation p.K486* 0.22 TCGA-F7-A624-01 1 154315748 154315748 A G ATP8B2 Missense_Mutation p.N571S 0.22 tolerated(0.12) benign(0.056) TCGA-F7-A624-01 1 154437925 154437925 C A IL6R 3'UTR 0.20 TCGA-F7-A624-01 1 154515221 154515221 G A TDRD10 Missense_Mutation p.A143T 0.09 tolerated(1) benign(0.001) TCGA-F7-A624-01 1 154924305 154924305 A G PBXIP1 Silent p.D48D 0.28 TCGA-F7-A624-01 1 155023290 155023290 G A DCST1 Silent p.E689E 0.13 TCGA-F7-A624-01 1 155106009 155106009 G A EFNA1 Missense_Mutation p.C140Y 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 1 155172668 155172668 A G THBS3 Missense_Mutation p.Y298H 0.18 deleterious(0.03) possibly_damaging(0.497) TCGA-F7-A624-01 1 155313465 155313465 G A ASH1L Nonsense_Mutation p.R2684* 0.24 TCGA-F7-A624-01 1 155448901 155448901 G A ASH1L Missense_Mutation p.R1254C 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-F7-A624-01 1 155870122 155870122 A G RIT1 3'UTR 0.24 TCGA-F7-A624-01 1 155884009 155884009 T - KIAA0907 Frame_Shift_Del p.N583Mfs*47 0.22 TCGA-F7-A624-01 1 156021624 156021624 A C UBQLN4 Missense_Mutation p.F45V 0.30 deleterious(0) unknown(0) TCGA-F7-A624-01 1 156039463 156039463 A G RAB25 Silent p.E145E 0.23 TCGA-F7-A624-01 1 156235591 156235591 T C SMG5 Silent p.V612V 0.23 TCGA-F7-A624-01 1 156513971 156513971 C T IQGAP3 Silent p.L811L 0.29 TCGA-F7-A624-01 1 156815812 156815812 T C INSRR Missense_Mutation p.Y637C 0.24 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 1 156819090 156819090 A G INSRR Silent p.G464G 0.12 TCGA-F7-A624-01 1 157509085 157509085 G A FCRL5 Missense_Mutation p.T398I 0.20 tolerated(0.13) possibly_damaging(0.734) TCGA-F7-A624-01 1 157804402 157804402 G A CD5L Silent p.A171A 0.20 TCGA-F7-A624-01 1 15817709 15817709 G A CASP9 3'Flank 0.22 TCGA-F7-A624-01 1 158637733 158637733 A G SPTA1 Silent p.G651G 0.19 TCGA-F7-A624-01 1 158637817 158637817 C T SPTA1 Silent p.Q623Q 0.22 TCGA-F7-A624-01 1 158747317 158747317 A G OR6N2 Missense_Mutation p.F37L 0.24 tolerated(0.63) benign(0.005) TCGA-F7-A624-01 1 159162460 159162460 T C CADM3 Missense_Mutation p.Y142H 0.26 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 1 159166185 159166186 - C CADM3 Frame_Shift_Ins p.H277Pfs*4 0.19 TCGA-F7-A624-01 1 159275912 159275912 T C FCER1A Missense_Mutation p.Y156H 0.28 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 1 160093055 160093055 C T ATP1A2 Missense_Mutation p.A77V 0.24 tolerated(0.13) benign(0.018) TCGA-F7-A624-01 1 160098602 160098602 A T ATP1A2 Missense_Mutation p.N393I 0.28 deleterious(0.01) possibly_damaging(0.829) TCGA-F7-A624-01 1 160249240 160249240 G A PEX19 3'UTR 0.19 TCGA-F7-A624-01 1 160394995 160394995 G A VANGL2 Missense_Mutation p.E465K 0.15 deleterious(0.01) possibly_damaging(0.594) TCGA-F7-A624-01 1 16053852 16053852 C T PLEKHM2 Missense_Mutation p.R429C 0.32 tolerated_low_confidence(0.06) benign(0.001) TCGA-F7-A624-01 1 160803891 160803891 A G CD244 Missense_Mutation p.S309P 0.16 tolerated(0.06) benign(0.294) TCGA-F7-A624-01 1 161011565 161011565 A G USF1 Silent p.Y116Y 0.19 TCGA-F7-A624-01 1 161021404 161021404 G A ARHGAP30 Missense_Mutation p.P374S 0.27 tolerated(0.07) benign(0.103) TCGA-F7-A624-01 1 161600913 161600913 A G FCGR3B Missense_Mutation p.L27S 0.20 tolerated(0.2) benign(0.003) TCGA-F7-A624-01 1 162351667 162351667 C A C1orf226 Intron 0.45 TCGA-F7-A624-01 1 16245473 16245473 A G SPEN Missense_Mutation p.Y483C 0.26 probably_damaging(0.999) TCGA-F7-A624-01 1 16256223 16256223 T A SPEN Missense_Mutation p.I1163N 0.14 probably_damaging(0.996) TCGA-F7-A624-01 1 16353263 16353263 C A CLCNKA Silent p.P216P 0.25 TCGA-F7-A624-01 1 16378219 16378219 C T CLCNKB Missense_Mutation p.R438C 0.22 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.37 TCGA-F7-A624-01 1 16534495 16534495 C T ARHGEF19 Missense_Mutation p.R213Q 0.19 deleterious(0.03) possibly_damaging(0.466) TCGA-F7-A624-01 1 165667849 165667849 G A ALDH9A1 5'UTR 0.36 TCGA-F7-A624-01 1 165865504 165865504 T C UCK2 Missense_Mutation p.V145A 0.26 deleterious(0) possibly_damaging(0.588) TCGA-F7-A624-01 1 167097313 167097313 A G DUSP27 Missense_Mutation p.K982R 0.07 tolerated(0.91) benign(0.015) TCGA-F7-A624-01 1 167345366 167345366 T A POU2F1 Missense_Mutation p.I231N 0.17 deleterious(0) unknown(0) TCGA-F7-A624-01 1 168066456 168066456 A G GPR161 Missense_Mutation p.L150P 0.26 deleterious(0) possibly_damaging(0.894) TCGA-F7-A624-01 1 168215989 168215989 T C SFT2D2 3'UTR 0.17 TCGA-F7-A624-01 1 16946358 16946358 G A RP5-1182A14.5 3'Flank 0.19 TCGA-F7-A624-01 1 169796951 169796951 C T C1orf112 Missense_Mutation p.T366I 0.22 deleterious(0.01) possibly_damaging(0.662) TCGA-F7-A624-01 1 170513868 170513868 A G GORAB Missense_Mutation p.T207A 0.22 tolerated(0.35) benign(0.065) TCGA-F7-A624-01 1 171227192 171227192 A G FMO1 5'UTR 0.22 TCGA-F7-A624-01 1 171753286 171753286 C T METTL13 Missense_Mutation p.A187V 0.26 tolerated(0.19) benign(0.007) TCGA-F7-A624-01 1 17257070 17257070 C T CROCC Missense_Mutation p.A277V 0.18 benign(0.036) TCGA-F7-A624-01 1 17265455 17265455 A G CROCC Missense_Mutation p.T476A 0.16 benign(0.047) TCGA-F7-A624-01 1 17275411 17275411 G T CROCC Missense_Mutation p.E942D 0.19 possibly_damaging(0.755) TCGA-F7-A624-01 1 17281861 17281861 C T CROCC Missense_Mutation p.R1174W 0.17 probably_damaging(0.996) TCGA-F7-A624-01 1 17292528 17292528 G A CROCC Missense_Mutation p.R1537H 0.21 possibly_damaging(0.715) TCGA-F7-A624-01 1 173907719 173907719 T C RC3H1 3'UTR 0.27 TCGA-F7-A624-01 1 174976282 174976282 G T CACYBP Missense_Mutation p.M127I 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-F7-A624-01 1 174979304 174979304 T C CACYBP 3'UTR 0.19 TCGA-F7-A624-01 1 175293598 175293598 T C TNR Missense_Mutation p.D1284G 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 1 179033563 179033563 C G FAM20B Silent p.R290R 0.22 TCGA-F7-A624-01 1 179271879 179271879 T C SOAT1 Silent p.P20P 0.10 TCGA-F7-A624-01 1 17966735 17966735 C - ARHGEF10L Frame_Shift_Del p.N739Tfs*3 0.22 TCGA-F7-A624-01 1 180080354 180080354 C G CEP350 3'UTR 0.23 TCGA-F7-A624-01 1 180832973 180832973 A G XPR1 Missense_Mutation p.N544S 0.28 deleterious(0.02) possibly_damaging(0.838) TCGA-F7-A624-01 1 18149520 18149520 T C ACTL8 Missense_Mutation p.V6A 0.22 deleterious(0.01) benign(0.258) TCGA-F7-A624-01 1 182852455 182852455 T C DHX9 Silent p.S1032S 0.30 TCGA-F7-A624-01 1 183495741 183495741 A G SMG7 Missense_Mutation p.E108G 0.14 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 1 183885723 183885723 C T RGL1 Missense_Mutation p.T666M 0.32 tolerated(0.06) possibly_damaging(0.836) TCGA-F7-A624-01 1 183909867 183909867 A T COLGALT2 Missense_Mutation p.N484K 0.26 tolerated(0.14) benign(0.219) TCGA-F7-A624-01 1 185120973 185120973 T C TRMT1L Silent p.S110S 0.22 TCGA-F7-A624-01 1 185125810 185125810 A G TRMT1L Missense_Mutation p.L12P 0.21 tolerated_low_confidence(0.18) possibly_damaging(0.766) TCGA-F7-A624-01 1 185267124 185267124 A T IVNS1ABP 3'UTR 0.21 TCGA-F7-A624-01 1 186277353 186277353 T C PRG4 Silent p.P834P 0.23 TCGA-F7-A624-01 1 186303547 186303547 G A TPR Missense_Mutation p.R1698C 0.29 possibly_damaging(0.689) TCGA-F7-A624-01 1 186648239 186648239 C T PTGS2 Silent p.V88V 0.18 TCGA-F7-A624-01 1 18703432 18703432 A G IGSF21 Missense_Mutation p.T414A 0.12 deleterious(0.02) possibly_damaging(0.464) TCGA-F7-A624-01 1 19401333 19401333 A G UBR4 Missense_Mutation p.V5182A 0.14 benign(0.007) TCGA-F7-A624-01 1 19422136 19422136 T A UBR4 Missense_Mutation p.K4510I 0.31 probably_damaging(0.995) TCGA-F7-A624-01 1 196434491 196434491 A G KCNT2 Silent p.R190R 0.22 TCGA-F7-A624-01 1 19651169 19651169 G A PQLC2 Silent p.A69A 0.20 TCGA-F7-A624-01 1 196694375 196694375 T C CFH Silent p.N607N 0.19 TCGA-F7-A624-01 1 196963354 196963354 T C CFHR5 Missense_Mutation p.F192S 0.25 deleterious(0) probably_damaging(0.979) TCGA-F7-A624-01 1 197030932 197030932 T C F13B Missense_Mutation p.T145A 0.17 tolerated(0.34) benign(0.009) TCGA-F7-A624-01 1 197168890 197168890 T - ZBTB41 Frame_Shift_Del p.K238Nfs*4 0.10 TCGA-F7-A624-01 1 197886860 197886860 C A LHX9 5'UTR 0.30 TCGA-F7-A624-01 1 200613329 200613329 A G DDX59 3'UTR 0.12 TCGA-F7-A624-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.19 TCGA-F7-A624-01 1 200842781 200842781 C T GPR25 Silent p.L206L 0.11 TCGA-F7-A624-01 1 200944736 200944736 G A KIF21B Missense_Mutation p.P1502L 0.20 deleterious(0) possibly_damaging(0.884) TCGA-F7-A624-01 1 200954079 200954079 T A KIF21B Silent p.T1237T 0.18 TCGA-F7-A624-01 1 201356220 201356220 C T LAD1 Missense_Mutation p.R90K 0.38 deleterious(0.01) probably_damaging(0.972) TCGA-F7-A624-01 1 201779810 201779810 A C NAV1 Missense_Mutation p.Y1574S 0.17 deleterious(0) probably_damaging(0.979) TCGA-F7-A624-01 1 202096921 202096921 G A GPR37L1 Missense_Mutation p.R228H 0.29 deleterious(0.02) possibly_damaging(0.908) TCGA-F7-A624-01 1 202128645 202128645 C T PTPN7 Intron 0.24 TCGA-F7-A624-01 1 202722136 202722136 A G KDM5B Missense_Mutation p.V533A 0.33 deleterious(0.03) possibly_damaging(0.611) TCGA-F7-A624-01 1 202842810 202842810 G A RP11-480I12.7 RNA 0.21 TCGA-F7-A624-01 1 203026055 203026055 G A PPFIA4 Missense_Mutation p.S289N 0.19 deleterious(0.03) benign(0.003) TCGA-F7-A624-01 1 20305005 20305005 G A PLA2G2A Missense_Mutation p.A18V 0.11 tolerated(1) benign(0.003) TCGA-F7-A624-01 1 20416375 20416375 C T PLA2G5 Silent p.G93G 0.35 TCGA-F7-A624-01 1 204412676 204412676 A G PIK3C2B Missense_Mutation p.Y973H 0.22 tolerated(0.76) benign(0.009) TCGA-F7-A624-01 1 204957844 204957844 G A NFASC Missense_Mutation p.V893M 0.26 deleterious(0) probably_damaging(0.956) TCGA-F7-A624-01 1 205027164 205027164 C T CNTN2 Silent p.R62R 0.16 TCGA-F7-A624-01 1 205312508 205312508 G A KLHDC8A Silent p.T75T 0.23 TCGA-F7-A624-01 1 206230826 206230826 T C AVPR1B Missense_Mutation p.F320S 0.28 deleterious(0) benign(0.199) TCGA-F7-A624-01 1 2066756 2066756 C T PRKCZ Silent p.G130G 0.20 TCGA-F7-A624-01 1 207222726 207222726 G A YOD1 Missense_Mutation p.S229F 0.23 deleterious(0) probably_damaging(0.941) TCGA-F7-A624-01 1 207648545 207648545 A G CR2 Silent p.P900P 0.24 TCGA-F7-A624-01 1 208061250 208061250 T C CD34 Missense_Mutation p.T331A 0.14 deleterious(0.03) benign(0.063) TCGA-F7-A624-01 1 208206837 208206837 T C PLXNA2 Missense_Mutation p.T1628A 0.16 tolerated(0.73) probably_damaging(0.982) TCGA-F7-A624-01 1 2082410 2082410 A T PRKCZ Missense_Mutation p.D290V 0.22 deleterious(0) probably_damaging(0.954) TCGA-F7-A624-01 1 20827127 20827127 A G MUL1 3'UTR 0.23 TCGA-F7-A624-01 1 21074117 21074117 G A HP1BP3 Silent p.C391C 0.19 TCGA-F7-A624-01 1 211652549 211652549 C T RD3 Silent p.T139T 0.35 TCGA-F7-A624-01 1 212530583 212530583 A T PPP2R5A Missense_Mutation p.M395L 0.26 tolerated(0.07) benign(0.024) TCGA-F7-A624-01 1 212799452 212799452 G A FAM71A Silent p.E411E 0.21 TCGA-F7-A624-01 1 213062505 213062505 C T FLVCR1 Silent p.F477F 0.20 TCGA-F7-A624-01 1 214830564 214830564 A - CENPF Frame_Shift_Del p.N2926Ifs*37 0.17 TCGA-F7-A624-01 1 21551831 21551831 T A ECE1 Missense_Mutation p.N651I 0.21 deleterious(0.02) probably_damaging(0.918) TCGA-F7-A624-01 1 216462747 216462747 T C USH2A Missense_Mutation p.N616D 0.08 possibly_damaging(0.744) TCGA-F7-A624-01 1 216498739 216498739 C A USH2A Missense_Mutation p.G351C 0.18 probably_damaging(0.958) TCGA-F7-A624-01 1 21936761 21936761 C T RAP1GAP Missense_Mutation p.R348Q 0.19 deleterious(0.02) probably_damaging(0.92) TCGA-F7-A624-01 1 220088800 220088800 C T SLC30A10 Silent p.T483T 0.21 TCGA-F7-A624-01 1 222695905 222695905 T C HHIPL2 3'UTR 0.19 TCGA-F7-A624-01 1 22336235 22336235 A G CELA3A Missense_Mutation p.D227G 0.22 tolerated(0.06) possibly_damaging(0.829) TCGA-F7-A624-01 1 223568079 223568079 A G C1orf65 Missense_Mutation p.D421G 0.15 deleterious(0.03) benign(0.004) TCGA-F7-A624-01 1 223991931 223991931 T - TP53BP2 Frame_Shift_Del p.V199* 0.23 TCGA-F7-A624-01 1 224001956 224001956 G - TP53BP2 Frame_Shift_Del p.P92Lfs*6 0.22 TCGA-F7-A624-01 1 226109591 226109591 G A PYCR2 Silent p.A169A 0.27 TCGA-F7-A624-01 1 226340106 226340106 C G ACBD3 Missense_Mutation p.W435C 0.24 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 1 22835204 22835204 C T ZBTB40 Missense_Mutation p.A560V 0.29 tolerated(0.06) unknown(0) TCGA-F7-A624-01 1 228362598 228362598 G A IBA57 Missense_Mutation p.A183T 0.21 tolerated(0.7) benign(0.01) TCGA-F7-A624-01 1 22838593 22838593 T C ZBTB40 Silent p.C809C 0.22 TCGA-F7-A624-01 1 228400338 228400338 T C OBSCN Missense_Mutation p.V285A 0.21 benign(0.135) TCGA-F7-A624-01 1 22843857 22843857 C T ZBTB40 Silent p.H911H 0.27 TCGA-F7-A624-01 1 228462511 228462511 C T OBSCN Silent p.G2349G 0.19 TCGA-F7-A624-01 1 228464950 228464950 G A OBSCN Silent p.A2605A 0.22 TCGA-F7-A624-01 1 228475447 228475447 T C OBSCN Silent p.G3628G 0.19 TCGA-F7-A624-01 1 228494170 228494170 A T OBSCN Silent p.T4876T 0.09 TCGA-F7-A624-01 1 22920126 22920126 C G EPHA8 Nonsense_Mutation p.S517* 0.26 TCGA-F7-A624-01 1 22927162 22927162 G A EPHA8 Silent p.K799K 0.24 TCGA-F7-A624-01 1 229478194 229478194 C - CCSAP Frame_Shift_Del p.V7* 0.23 TCGA-F7-A624-01 1 231155818 231155818 C T FAM89A Missense_Mutation p.E116K 0.28 deleterious(0) probably_damaging(0.988) TCGA-F7-A624-01 1 231298757 231298757 T C TRIM67 Silent p.F14F 0.25 TCGA-F7-A624-01 1 231337181 231337181 T C TRIM67 Silent p.S484S 0.26 TCGA-F7-A624-01 1 231376829 231376829 G A C1orf131 Missense_Mutation p.S20F 0.09 deleterious_low_confidence(0.03) benign(0.446) TCGA-F7-A624-01 1 23240212 23240212 A G EPHB2 3'UTR 0.17 TCGA-F7-A624-01 1 232601047 232601047 C T SIPA1L2 Missense_Mutation p.A787T 0.25 deleterious(0) probably_damaging(0.976) TCGA-F7-A624-01 1 232649899 232649899 T A SIPA1L2 Missense_Mutation p.D396V 0.22 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 1 233113938 233113938 G A NTPCR Silent p.L178L 0.13 TCGA-F7-A624-01 1 23419686 23419686 C T LUZP1 Missense_Mutation p.E357K 0.33 tolerated(0.13) benign(0.3) TCGA-F7-A624-01 1 235403679 235403679 A G ARID4B Silent p.C178C 0.32 TCGA-F7-A624-01 1 235600692 235600692 T C TBCE Missense_Mutation p.L340P 0.21 tolerated(0.21) benign(0.122) TCGA-F7-A624-01 1 235618984 235618984 T C B3GALNT2 Silent p.T346T 0.23 TCGA-F7-A624-01 1 235866193 235866193 T C LYST Missense_Mutation p.T3410A 0.21 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 1 235966293 235966293 A G LYST Silent p.C1209C 0.15 TCGA-F7-A624-01 1 236881176 236881176 A G ACTN2 Missense_Mutation p.N49D 0.30 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 1 23694501 23694501 C G ZNF436 5'UTR 0.17 TCGA-F7-A624-01 1 236959026 236959026 T C MTR Missense_Mutation p.L8P 0.22 tolerated(0.19) benign(0) TCGA-F7-A624-01 1 23696209 23696209 C G C1orf213 3'UTR 0.26 TCGA-F7-A624-01 1 23751109 23751109 C T TCEA3 Silent p.E6E 0.18 TCGA-F7-A624-01 1 237659870 237659870 A G RYR2 Missense_Mutation p.Y674C 0.33 probably_damaging(1) TCGA-F7-A624-01 1 237921019 237921019 A G RYR2 Silent p.A3756A 0.20 TCGA-F7-A624-01 1 240370643 240370643 C G FMN2 Missense_Mutation p.S844C 0.22 unknown(0) TCGA-F7-A624-01 1 242253062 242253062 A - PLD5 3'UTR 0.23 TCGA-F7-A624-01 1 243328085 243328085 T C CEP170 Silent p.S1059S 0.12 TCGA-F7-A624-01 1 243328308 243328308 C A CEP170 Missense_Mutation p.R985M 0.17 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 1 24390588 24390588 T C MYOM3 Missense_Mutation p.D1199G 0.23 tolerated(0.39) benign(0.41) TCGA-F7-A624-01 1 244218341 244218341 C T ZBTB18 Missense_Mutation p.S422L 0.34 tolerated(0.06) benign(0.024) TCGA-F7-A624-01 1 24447215 24447215 T C IL22RA1 3'UTR 0.18 TCGA-F7-A624-01 1 24484361 24484362 GT - IFNLR1 Frame_Shift_Del p.H274Pfs*15 0.21 TCGA-F7-A624-01 1 245849150 245849150 G A KIF26B Silent p.G955G 0.25 TCGA-F7-A624-01 1 245851965 245851965 G A KIF26B Missense_Mutation p.G1894S 0.11 deleterious(0) unknown(0) TCGA-F7-A624-01 1 246784753 246784753 A G CNST Silent p.A134A 0.27 TCGA-F7-A624-01 1 247014460 247014460 T C AHCTF1 Silent p.K1625K 0.21 TCGA-F7-A624-01 1 247025261 247025261 C A AHCTF1 Silent p.G1254G 0.13 TCGA-F7-A624-01 1 248059733 248059733 C - OR2W3 Frame_Shift_Del p.L284Sfs*14 0.24 TCGA-F7-A624-01 1 248403002 248403002 A G OR2M4 Missense_Mutation p.M258V 0.20 tolerated(0.07) benign(0.013) TCGA-F7-A624-01 1 248458064 248458064 A G OR2T12 Missense_Mutation p.S273P 0.17 deleterious(0.01) probably_damaging(1) TCGA-F7-A624-01 1 248551319 248551319 G A OR2T6 Missense_Mutation p.S137N 0.23 tolerated(0.88) benign(0.02) TCGA-F7-A624-01 1 248570264 248570264 C T OR2T1 Silent p.V323V 0.21 TCGA-F7-A624-01 1 248756211 248756211 G A OR2T10 Missense_Mutation p.P287S 0.22 deleterious(0) probably_damaging(0.983) TCGA-F7-A624-01 1 2524268 2524290 TCACGTTCTGTTCGTCTGCCAGG - MMEL1 Splice_Site p.X661_splice 0.26 TCGA-F7-A624-01 1 25747184 25747185 - A RHCE Frame_Shift_Ins p.T32Yfs*4 0.21 TCGA-F7-A624-01 1 26136267 26136267 C T SEPN1 Silent p.D322D 0.25 TCGA-F7-A624-01 1 26752828 26752828 T C LIN28A Missense_Mutation p.M170T 0.09 deleterious(0.01) benign(0.086) TCGA-F7-A624-01 1 26878180 26878180 G A RPS6KA1 Missense_Mutation p.R154H 0.25 deleterious(0.01) benign(0.149) TCGA-F7-A624-01 1 27426906 27426906 G - SLC9A1 Frame_Shift_Del p.A781Rfs*115 0.20 TCGA-F7-A624-01 1 27687448 27687448 G A MAP3K6 Silent p.P628P 0.37 TCGA-F7-A624-01 1 27691380 27691380 T C MAP3K6 Missense_Mutation p.S122G 0.24 tolerated(0.07) benign(0.001) TCGA-F7-A624-01 1 27877191 27877191 G A AHDC1 Missense_Mutation p.A479V 0.24 deleterious(0) possibly_damaging(0.682) TCGA-F7-A624-01 1 27877213 27877213 G A AHDC1 Missense_Mutation p.R472W 0.26 deleterious(0) possibly_damaging(0.835) TCGA-F7-A624-01 1 27941035 27941035 T C FGR Silent p.A385A 0.17 TCGA-F7-A624-01 1 31437751 31437751 T C PUM1 Missense_Mutation p.N698S 0.17 tolerated(0.83) benign(0.02) TCGA-F7-A624-01 1 32157018 32157018 C T COL16A1 Silent p.P466P 0.27 TCGA-F7-A624-01 1 32162681 32162682 - G COL16A1 Frame_Shift_Ins p.E250Rfs*13 0.24 TCGA-F7-A624-01 1 32163578 32163578 G A COL16A1 Missense_Mutation p.P196S 0.21 unknown(0) TCGA-F7-A624-01 1 32221928 32221928 C T BAI2 Silent p.P170P 0.26 TCGA-F7-A624-01 1 32267263 32267263 A G SPOCD1 Splice_Site p.X475_splice 0.23 TCGA-F7-A624-01 1 32568241 32568241 C - TMEM39B Frame_Shift_Del p.Q484Rfs*? 0.24 TCGA-F7-A624-01 1 32674856 32674856 T C DCDC2B Silent p.R54R 0.26 TCGA-F7-A624-01 1 33058778 33058778 C T ZBTB8A Silent p.F82F 0.21 TCGA-F7-A624-01 1 33233495 33233495 C - KIAA1522 Frame_Shift_Del p.H117Tfs*24 0.37 TCGA-F7-A624-01 1 33790497 33790497 T C PHC2 Missense_Mutation p.Y849C 0.21 tolerated(0.25) benign(0.319) TCGA-F7-A624-01 1 33841032 33841032 T C PHC2 Missense_Mutation p.S37G 0.28 tolerated_low_confidence(0.4) benign(0.001) TCGA-F7-A624-01 1 3395015 3395015 C T ARHGEF16 Silent p.Y551Y 0.31 TCGA-F7-A624-01 1 35226920 35226920 G A GJB4 Missense_Mutation p.R22H 0.22 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 1 35351777 35351777 C T DLGAP3 Missense_Mutation p.R499Q 0.34 deleterious(0) probably_damaging(0.968) TCGA-F7-A624-01 1 35365747 35365747 C T DLGAP3 Missense_Mutation p.S412N 0.06 deleterious(0) probably_damaging(0.932) TCGA-F7-A624-01 1 35480372 35480372 A G ZMYM6 Missense_Mutation p.Y241H 0.23 deleterious(0.02) probably_damaging(0.93) TCGA-F7-A624-01 1 35484929 35484929 A G ZMYM6 Intron 0.20 TCGA-F7-A624-01 1 35653605 35653605 T C SFPQ Missense_Mutation p.E595G 0.21 tolerated(0.2) possibly_damaging(0.727) TCGA-F7-A624-01 1 35920007 35920007 A G KIAA0319L Missense_Mutation p.I579T 0.23 tolerated(0.06) benign(0.001) TCGA-F7-A624-01 1 35936545 35936545 G A KIAA0319L Silent p.Y344Y 0.24 TCGA-F7-A624-01 1 36056327 36056327 G A TFAP2E Missense_Mutation p.A333T 0.29 tolerated(0.74) benign(0.04) TCGA-F7-A624-01 1 36316458 36316458 A G AGO4 Missense_Mutation p.T761A 0.29 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 1 36859552 36859552 G A LSM10 Missense_Mutation p.T60M 0.19 tolerated(0.1) possibly_damaging(0.848) TCGA-F7-A624-01 1 36926325 36926325 T C MRPS15 Missense_Mutation p.N118S 0.06 tolerated(0.44) probably_damaging(0.931) TCGA-F7-A624-01 1 38019681 38019681 A G SNIP1 Silent p.G50G 0.35 TCGA-F7-A624-01 1 38227230 38227230 G A EPHA10 Silent p.L233L 0.33 TCGA-F7-A624-01 1 38265637 38265637 T C MANEAL Missense_Mutation p.V379A 0.17 tolerated(0.11) probably_damaging(0.99) TCGA-F7-A624-01 1 38272869 38272869 T C YRDC Silent p.V136V 0.33 TCGA-F7-A624-01 1 39322560 39322560 A G RRAGC Silent p.I144I 0.29 TCGA-F7-A624-01 1 39384785 39384785 C T RHBDL2 Missense_Mutation p.G34R 0.21 tolerated(0.45) benign(0.001) TCGA-F7-A624-01 1 40230438 40230438 C T BMP8B Missense_Mutation p.R242H 0.13 tolerated(0.12) benign(0.042) TCGA-F7-A624-01 1 40235542 40235542 G A OXCT2 Silent p.C462C 0.13 TCGA-F7-A624-01 1 40235979 40235979 T C OXCT2 Missense_Mutation p.N317D 0.19 deleterious(0) possibly_damaging(0.719) TCGA-F7-A624-01 1 40535434 40535434 G A CAP1 Missense_Mutation p.R294H 0.23 deleterious(0.05) benign(0.327) TCGA-F7-A624-01 1 40954809 40954809 G - ZFP69 Frame_Shift_Del p.Q92Sfs*13 0.21 TCGA-F7-A624-01 1 41012480 41012480 G A ZNF684 Missense_Mutation p.S162N 0.25 tolerated(1) benign(0) TCGA-F7-A624-01 1 41012511 41012511 T C ZNF684 Silent p.F172F 0.26 TCGA-F7-A624-01 1 41976694 41976694 G A HIVEP3 Missense_Mutation p.P2217S 0.31 benign(0.006) TCGA-F7-A624-01 1 43900072 43900072 G A SZT2 Silent p.E1883E 0.29 TCGA-F7-A624-01 1 45288255 45288257 GGA - PTCH2 In_Frame_Del p.S1148del 0.33 TCGA-F7-A624-01 1 45295429 45295429 C G PTCH2 Missense_Mutation p.E314Q 0.25 tolerated(0.37) benign(0.017) TCGA-F7-A624-01 1 45501439 45501439 T C ZSWIM5 Missense_Mutation p.T738A 0.23 deleterious(0) unknown(0) TCGA-F7-A624-01 1 46500250 46500250 C T MAST2 Silent p.S1303S 0.26 TCGA-F7-A624-01 1 46662488 46662488 C T POMGNT1 Missense_Mutation p.R90H 0.23 benign(0.001) TCGA-F7-A624-01 1 46871415 46871417 CCT - FAAH In_Frame_Del p.S247del 0.33 TCGA-F7-A624-01 1 4715423 4715423 G A AJAP1 5'UTR 0.26 TCGA-F7-A624-01 1 47338931 47338931 T C CYP4Z2P RNA 0.22 TCGA-F7-A624-01 1 4834618 4834618 G A AJAP1 Intron 0.28 TCGA-F7-A624-01 1 48694628 48694628 T C SLC5A9 Splice_Site p.X113_splice 0.27 TCGA-F7-A624-01 1 49056597 49056597 T C AGBL4 Missense_Mutation p.M338V 0.17 tolerated(0.38) possibly_damaging(0.854) TCGA-F7-A624-01 1 51439640 51439640 A G CDKN2C Missense_Mutation p.T69A 0.31 tolerated(0.52) benign(0.014) TCGA-F7-A624-01 1 51938592 51938592 A G EPS15 Missense_Mutation p.L35S 0.29 tolerated(0.57) benign(0.281) TCGA-F7-A624-01 1 52280401 52280401 A G NRD1 Silent p.I576I 0.17 TCGA-F7-A624-01 1 52838711 52838711 G - ORC1 3'UTR 0.22 TCGA-F7-A624-01 1 53287304 53287304 G A ZYG11B 3'UTR 0.25 TCGA-F7-A624-01 1 53516481 53516481 C T SCP2 3'UTR 0.17 TCGA-F7-A624-01 1 53722996 53722996 C G LRP8 Missense_Mutation p.V784L 0.31 tolerated(0.25) benign(0.041) TCGA-F7-A624-01 1 54298225 54298225 T C NDC1 Missense_Mutation p.Y73C 0.26 tolerated(0.2) benign(0.006) TCGA-F7-A624-01 1 54692744 54692744 A T SSBP3 3'UTR 0.26 TCGA-F7-A624-01 1 55203289 55203289 A G TTC4 Missense_Mutation p.Y338C 0.12 deleterious(0) benign(0.05) TCGA-F7-A624-01 1 55266896 55266896 A G TTC22 5'UTR 0.37 TCGA-F7-A624-01 1 55564160 55564160 G A USP24 Silent p.D1814D 0.14 TCGA-F7-A624-01 1 57480729 57480729 G A DAB1 Missense_Mutation p.P424L 0.25 deleterious(0.02) probably_damaging(0.971) TCGA-F7-A624-01 1 6046363 6046363 G T NPHP4 5'UTR 0.24 TCGA-F7-A624-01 1 60503711 60503711 T C C1orf87 Silent p.A272A 0.38 TCGA-F7-A624-01 1 6173014 6173014 G C CHD5 Missense_Mutation p.L1653V 0.18 tolerated_low_confidence(0.39) benign(0.025) TCGA-F7-A624-01 1 62267407 62267407 A - INADL Frame_Shift_Del p.N507Mfs*7 0.22 TCGA-F7-A624-01 1 62677217 62677217 T C L1TD1 3'UTR 0.40 TCGA-F7-A624-01 1 62962079 62962079 A G DOCK7 Silent p.R1587R 0.18 TCGA-F7-A624-01 1 62971474 62971474 G A DOCK7 Missense_Mutation p.T1466M 0.25 tolerated(0.22) benign(0.015) TCGA-F7-A624-01 1 63790050 63790050 A G FOXD3 Missense_Mutation p.T441A 0.29 tolerated_low_confidence(0.13) unknown(0) TCGA-F7-A624-01 1 63836712 63836712 T C ALG6 Missense_Mutation p.S22P 0.28 deleterious(0) probably_damaging(0.959) TCGA-F7-A624-01 1 64643562 64643562 A G ROR1 Missense_Mutation p.H613R 0.29 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 1 65138890 65138890 A G CACHD1 Missense_Mutation p.I803V 0.05 tolerated(0.18) benign(0.032) TCGA-F7-A624-01 1 6659379 6659379 G A KLHL21 Silent p.Y385Y 0.19 TCGA-F7-A624-01 1 67205086 67205086 C T SGIP1 Silent p.S700S 0.21 TCGA-F7-A624-01 1 67452114 67452114 T - MIER1 3'Flank 0.23 TCGA-F7-A624-01 1 67635261 67635261 G A IL23R Missense_Mutation p.A103T 0.06 deleterious(0) possibly_damaging(0.908) TCGA-F7-A624-01 1 67724679 67724679 A G IL23R Silent p.E586E 0.15 TCGA-F7-A624-01 1 68512579 68512579 G A DIRAS3 Silent p.I134I 0.19 TCGA-F7-A624-01 1 70820764 70820764 A G HHLA3 Missense_Mutation p.T44A 0.21 tolerated_low_confidence(0.1) benign(0.388) TCGA-F7-A624-01 1 72163772 72163772 C T NEGR1 Missense_Mutation p.D196N 0.16 tolerated(0.13) benign(0.122) TCGA-F7-A624-01 1 76387916 76387916 T - ASB17 Frame_Shift_Del p.N177Tfs*7 0.29 TCGA-F7-A624-01 1 77685039 77685039 C T PIGK Missense_Mutation p.V17M 0.18 tolerated(0.11) benign(0) TCGA-F7-A624-01 1 78098499 78098499 T C ZZZ3 Missense_Mutation p.N181D 0.09 tolerated(0.17) benign(0.006) TCGA-F7-A624-01 1 78098605 78098605 T C ZZZ3 Silent p.E145E 0.11 TCGA-F7-A624-01 1 79095512 79095513 - T IFI44L Frame_Shift_Ins p.N215Qfs*20 0.18 TCGA-F7-A624-01 1 7998254 7998254 T - TNFRSF9 Frame_Shift_Del p.G116Vfs*33 0.21 TCGA-F7-A624-01 1 8420636 8420636 T C RERE Silent p.T977T 0.16 TCGA-F7-A624-01 1 89408720 89408720 A G CCBL2 Missense_Mutation p.F424L 0.21 tolerated(0.18) probably_damaging(0.988) TCGA-F7-A624-01 1 89448713 89448713 T C RBMXL1 Missense_Mutation p.Y266C 0.09 deleterious(0.02) probably_damaging(0.99) TCGA-F7-A624-01 1 89616155 89616155 T C GBP7 Silent p.K243K 0.16 TCGA-F7-A624-01 1 92187562 92187562 T C TGFBR3 Missense_Mutation p.Y342C 0.22 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 1 92430262 92430262 G A BRDT Missense_Mutation p.A91T 0.35 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 1 92518158 92518158 T C EPHX4 Missense_Mutation p.V267A 0.29 tolerated(0.91) benign(0.013) TCGA-F7-A624-01 1 92568216 92568216 C T BTBD8 Silent p.F178F 0.20 TCGA-F7-A624-01 1 92846371 92846371 A - RPAP2 Frame_Shift_Del p.N595Mfs*7 0.22 TCGA-F7-A624-01 1 92946223 92946223 A G GFI1 Missense_Mutation p.S241P 0.21 tolerated(0.11) benign(0.001) TCGA-F7-A624-01 1 93691984 93691984 A C CCDC18 Missense_Mutation p.Q810P 0.25 deleterious(0) possibly_damaging(0.908) TCGA-F7-A624-01 1 94674816 94674816 C A ARHGAP29 Missense_Mutation p.G144V 0.17 deleterious(0) probably_damaging(0.965) TCGA-F7-A624-01 1 95322958 95322958 G C SLC44A3 Missense_Mutation p.W380C 0.31 deleterious(0.02) probably_damaging(0.987) TCGA-F7-A624-01 1 9627374 9627374 T - SLC25A33 Frame_Shift_Del p.F91Lfs*55 0.21 TCGA-F7-A624-01 1 97272452 97272452 T A PTBP2 Missense_Mutation p.I370N 0.21 deleterious(0) possibly_damaging(0.767) TCGA-F7-A624-01 1 9777114 9777114 C - PIK3CD Frame_Shift_Del p.Q295Rfs*39 0.17 TCGA-F7-A624-01 1 983037 983037 C T AGRN Missense_Mutation p.R1201C 0.21 tolerated(0.05) probably_damaging(0.995) TCGA-F7-A624-01 1 99771297 99771297 A G LPPR4 Silent p.R341R 0.27 TCGA-F7-A624-01 20 10280057 10280057 G T SNAP25 Missense_Mutation p.E183D 0.09 tolerated(0.49) benign(0.009) TCGA-F7-A624-01 20 1286147 1286147 C T SNPH Missense_Mutation p.R312C 0.18 tolerated(0.05) benign(0.005) TCGA-F7-A624-01 20 13098206 13098206 A G SPTLC3 Missense_Mutation p.Y329C 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 20 13550198 13550198 A G TASP1 Missense_Mutation p.V175A 0.26 tolerated(0.74) benign(0.017) TCGA-F7-A624-01 20 13782163 13782163 T C NDUFAF5 Missense_Mutation p.F184S 0.12 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 20 16478291 16478291 A T KIF16B Missense_Mutation p.S403R 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 20 17968909 17968909 G A MGME1 Missense_Mutation p.A278T 0.38 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 20 18297535 18297535 G A ZNF133 3'UTR 0.32 TCGA-F7-A624-01 20 18523805 18523805 C T SEC23B Missense_Mutation p.L552F 0.20 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 20 1960868 1960868 T C PDYN 3'UTR 0.10 TCGA-F7-A624-01 20 21376544 21376544 C T NKX2-4 3'UTR 0.26 TCGA-F7-A624-01 20 21376835 21376835 C T NKX2-4 Missense_Mutation p.G260D 0.36 tolerated(0.34) benign(0.036) TCGA-F7-A624-01 20 21687091 21687091 A T PAX1 Missense_Mutation p.E101V 0.19 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 20 23066728 23066728 G A CD93 Silent p.T34T 0.40 TCGA-F7-A624-01 20 2376055 2376055 G A TGM6 Missense_Mutation p.V133I 0.28 tolerated(0.92) benign(0.012) TCGA-F7-A624-01 20 2377243 2377243 A G TGM6 Missense_Mutation p.I172M 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-F7-A624-01 20 23966824 23966824 G A GGTLC1 Missense_Mutation p.R65C 0.25 tolerated(0.13) benign(0.032) TCGA-F7-A624-01 20 25004174 25004174 C T ACSS1 Silent p.V245V 0.19 TCGA-F7-A624-01 20 25269070 25269070 G C PYGB Missense_Mutation p.R593T 0.21 tolerated(0.18) benign(0.006) TCGA-F7-A624-01 20 25271252 25271252 G A PYGB Missense_Mutation p.E655K 0.19 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 20 2776744 2776744 T C CPXM1 Missense_Mutation p.N436D 0.20 tolerated(0.08) probably_damaging(0.929) TCGA-F7-A624-01 20 279084 279084 A G ZCCHC3 Missense_Mutation p.K286R 0.06 tolerated(0.3) benign(0.286) TCGA-F7-A624-01 20 2796271 2796271 T C C20orf141 Silent p.A116A 0.22 TCGA-F7-A624-01 20 2841160 2841160 C A VPS16 Silent p.A145A 0.23 TCGA-F7-A624-01 20 3018849 3018849 A G PTPRA 3'UTR 0.35 TCGA-F7-A624-01 20 30411359 30411359 T C MYLK2 Silent p.S284S 0.26 TCGA-F7-A624-01 20 30797914 30797914 G T POFUT1 Silent p.L55L 0.25 TCGA-F7-A624-01 20 3146964 3146964 C T LZTS3 Missense_Mutation p.V168I 0.19 deleterious(0.01) possibly_damaging(0.796) TCGA-F7-A624-01 20 31671444 31671444 T C BPIFB4 Silent p.L147L 0.25 TCGA-F7-A624-01 20 31676817 31676817 C T BPIFB4 Silent p.A324A 0.20 TCGA-F7-A624-01 20 3210407 3210407 T C SLC4A11 Missense_Mutation p.Y545C 0.20 deleterious(0) probably_damaging(0.993) TCGA-F7-A624-01 20 3212165 3212165 C T SLC4A11 Silent p.A296A 0.25 TCGA-F7-A624-01 20 32266051 32266051 A G E2F1 Silent p.C227C 0.33 TCGA-F7-A624-01 20 32371563 32371563 G C ZNF341 Missense_Mutation p.R575P 0.20 deleterious(0) probably_damaging(0.976) TCGA-F7-A624-01 20 33296605 33296606 - C TP53INP2 Frame_Shift_Ins p.R23Pfs*9 0.19 TCGA-F7-A624-01 20 33451197 33451197 C T GGT7 Silent p.T108T 0.25 TCGA-F7-A624-01 20 33565879 33565879 T C MYH7B Missense_Mutation p.V66A 0.25 benign(0.002) TCGA-F7-A624-01 20 33582100 33582100 T C MYH7B Silent p.L908L 0.27 TCGA-F7-A624-01 20 33764535 33764535 C T PROCR Silent p.V212V 0.32 TCGA-F7-A624-01 20 34096009 34096009 C T CEP250 Missense_Mutation p.T2299I 0.25 probably_damaging(0.927) TCGA-F7-A624-01 20 34099512 34099512 G A CEP250 3'UTR 0.39 TCGA-F7-A624-01 20 34302199 34302199 G A RBM39 Missense_Mutation p.A335V 0.34 tolerated(0.31) benign(0.231) TCGA-F7-A624-01 20 34611575 34611575 A T CNBD2 Missense_Mutation p.I437F 0.11 deleterious(0) possibly_damaging(0.897) TCGA-F7-A624-01 20 35128968 35128968 C T DLGAP4 Silent p.C819C 0.25 TCGA-F7-A624-01 20 35929589 35929589 A G MANBAL Intron 0.24 TCGA-F7-A624-01 20 37144935 37144935 T C RALGAPB Missense_Mutation p.Y325H 0.22 tolerated(1) benign(0.014) TCGA-F7-A624-01 20 37146167 37146167 C G RALGAPB Nonsense_Mutation p.S357* 0.22 TCGA-F7-A624-01 20 37177336 37177336 T - RALGAPB Frame_Shift_Del p.F971Sfs*53 0.21 TCGA-F7-A624-01 20 371982 371982 C - TRIB3 Frame_Shift_Del p.P116Rfs*94 0.27 TCGA-F7-A624-01 20 39729957 39729957 T C TOP1 Silent p.I424I 0.25 TCGA-F7-A624-01 20 40065975 40065975 C G CHD6 Splice_Site p.X1336_splice 0.27 TCGA-F7-A624-01 20 40126222 40126222 A G CHD6 Intron 0.19 TCGA-F7-A624-01 20 419433 419433 G A TBC1D20 Missense_Mutation p.P337S 0.21 deleterious(0) probably_damaging(0.931) TCGA-F7-A624-01 20 43378792 43378792 T C KCNK15 Silent p.G102G 0.23 TCGA-F7-A624-01 20 43438825 43438825 C T RIMS4 Missense_Mutation p.E30K 0.22 tolerated_low_confidence(0.2) benign(0.008) TCGA-F7-A624-01 20 43623734 43623734 A G STK4 Missense_Mutation p.T177A 0.26 deleterious(0.03) benign(0.357) TCGA-F7-A624-01 20 43804535 43804535 G A PI3 Missense_Mutation p.R38H 0.24 tolerated(0.59) benign(0.001) TCGA-F7-A624-01 20 43837051 43837051 A G SEMG1 Silent p.Q371Q 0.22 TCGA-F7-A624-01 20 44037154 44037154 T C DBNDD2 Missense_Mutation p.L118P 0.25 deleterious(0.01) probably_damaging(1) TCGA-F7-A624-01 20 44463689 44463689 A G SNX21 Silent p.A127A 0.12 TCGA-F7-A624-01 20 44589503 44589503 C A ZNF335 Silent p.P555P 0.43 TCGA-F7-A624-01 20 44673611 44673611 C T SLC12A5 Silent p.G490G 0.21 TCGA-F7-A624-01 20 44803673 44803673 G A CDH22 Silent p.S653S 0.08 TCGA-F7-A624-01 20 44815539 44815539 C G CDH22 Missense_Mutation p.D491H 0.21 deleterious(0) benign(0.436) TCGA-F7-A624-01 20 44983791 44983791 G A SLC35C2 Silent p.F166F 0.34 TCGA-F7-A624-01 20 45022181 45022181 T C ELMO2 Missense_Mutation p.Y60C 0.07 deleterious(0) probably_damaging(0.99) TCGA-F7-A624-01 20 45022217 45022217 T C ELMO2 Missense_Mutation p.Y48C 0.26 tolerated(0.08) benign(0.002) TCGA-F7-A624-01 20 45130425 45130425 T G ZNF334 Missense_Mutation p.E518A 0.04 deleterious(0.05) probably_damaging(0.984) TCGA-F7-A624-01 20 45131105 45131106 TC - ZNF334 Frame_Shift_Del p.R291Tfs*3 0.23 TCGA-F7-A624-01 20 45875172 45875172 A G ZMYND8 Missense_Mutation p.Y622H 0.31 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-F7-A624-01 20 46292235 46292235 T C SULF2 Missense_Mutation p.H730R 0.29 deleterious(0) possibly_damaging(0.756) TCGA-F7-A624-01 20 4680489 4680489 G A PRNP Missense_Mutation p.R208H 0.16 tolerated(0.16) possibly_damaging(0.843) TCGA-F7-A624-01 20 47601376 47601376 C A ARFGEF2 Missense_Mutation p.S690Y 0.23 deleterious(0) benign(0.242) TCGA-F7-A624-01 20 47635470 47635470 C G ARFGEF2 Missense_Mutation p.S1520C 0.24 deleterious(0.01) possibly_damaging(0.662) TCGA-F7-A624-01 20 47741121 47741121 C T STAU1 Missense_Mutation p.A205T 0.22 tolerated(0.41) benign(0.003) TCGA-F7-A624-01 20 47881256 47881256 C G ZNFX1 Missense_Mutation p.M716I 0.26 tolerated(0.42) benign(0.166) TCGA-F7-A624-01 20 47881313 47881313 C G ZNFX1 Silent p.L697L 0.23 TCGA-F7-A624-01 20 47887207 47887207 A T ZNFX1 Missense_Mutation p.V381D 0.27 deleterious(0) probably_damaging(0.971) TCGA-F7-A624-01 20 48260136 48260136 T C B4GALT5 Missense_Mutation p.E139G 0.22 deleterious(0.03) benign(0.065) TCGA-F7-A624-01 20 4864378 4864378 A - SLC23A2 Frame_Shift_Del p.L245* 0.15 TCGA-F7-A624-01 20 49197817 49197817 T C PTPN1 Silent p.T368T 0.22 TCGA-F7-A624-01 20 49575406 49575406 C A MOCS3 Silent p.A9A 0.23 TCGA-F7-A624-01 20 49620945 49620945 G A KCNG1 Silent p.F391F 0.28 TCGA-F7-A624-01 20 50139950 50139950 G A NFATC2 Missense_Mutation p.P277L 0.20 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 20 50273640 50273640 A G ATP9A Missense_Mutation p.V448A 0.16 tolerated(0.68) benign(0.014) TCGA-F7-A624-01 20 50769809 50769809 T C ZFP64 Missense_Mutation p.I308V 0.25 tolerated(0.07) probably_damaging(0.919) TCGA-F7-A624-01 20 52198633 52198633 C T ZNF217 Missense_Mutation p.G245S 0.27 tolerated(0.21) benign(0.011) TCGA-F7-A624-01 20 5294896 5294896 A G PROKR2 Silent p.D40D 0.27 TCGA-F7-A624-01 20 54978828 54978828 C - CSTF1 3'UTR 0.20 TCGA-F7-A624-01 20 5528364 5528364 A G GPCPD1 Silent p.C654C 0.28 TCGA-F7-A624-01 20 55982757 55982757 A G RBM38 Missense_Mutation p.Y192C 0.24 deleterious(0) possibly_damaging(0.754) TCGA-F7-A624-01 20 56993282 56993282 T C VAPB Missense_Mutation p.V25A 0.04 deleterious(0.02) possibly_damaging(0.468) TCGA-F7-A624-01 20 57251412 57251412 G A STX16 3'UTR 0.32 TCGA-F7-A624-01 20 57415854 57415854 G A RP4-806M20.3 5'Flank 0.24 TCGA-F7-A624-01 20 57485765 57485765 C T GNAS Missense_Mutation p.R999C 0.23 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 20 57613590 57613590 A C SLMO2 Missense_Mutation p.D44E 0.07 tolerated(0.08) possibly_damaging(0.742) TCGA-F7-A624-01 20 58461018 58461018 C T SYCP2 Missense_Mutation p.G832S 0.11 tolerated(0.22) benign(0.163) TCGA-F7-A624-01 20 58475270 58475270 A G SYCP2 Missense_Mutation p.S443P 0.21 tolerated(0.56) benign(0.003) TCGA-F7-A624-01 20 58519670 58519670 T C FAM217B Silent p.S224S 0.25 TCGA-F7-A624-01 20 58569540 58569540 T C CDH26 Silent p.N554N 0.20 TCGA-F7-A624-01 20 5924869 5924869 T C TRMT6 Missense_Mutation p.T133A 0.16 tolerated(0.42) benign(0.04) TCGA-F7-A624-01 20 60470078 60470078 A G CDH4 Missense_Mutation p.N388S 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-F7-A624-01 20 60749635 60749635 G A SS18L1 Missense_Mutation p.G367R 0.22 deleterious_low_confidence(0) unknown(0) TCGA-F7-A624-01 20 60774252 60774252 G A MTG2 Silent p.P255P 0.28 TCGA-F7-A624-01 20 6077679 6077679 T C FERMT1 Missense_Mutation p.Y320C 0.10 deleterious(0) probably_damaging(0.954) TCGA-F7-A624-01 20 60838714 60838714 C T OSBPL2 Silent p.S75S 0.21 TCGA-F7-A624-01 20 60885589 60885589 G A LAMA5 Silent p.L3496L 0.26 TCGA-F7-A624-01 20 61513712 61513713 - T DIDO1 Frame_Shift_Ins p.I1199Nfs*176 0.20 TCGA-F7-A624-01 20 61525511 61525511 T C DIDO1 Missense_Mutation p.K870E 0.25 possibly_damaging(0.729) TCGA-F7-A624-01 20 62076603 62076603 A G KCNQ2 Missense_Mutation p.F168L 0.24 tolerated(0.38) probably_damaging(0.999) TCGA-F7-A624-01 20 62187126 62187126 C T C20orf195 Missense_Mutation p.A37V 0.17 tolerated(0.05) possibly_damaging(0.664) TCGA-F7-A624-01 20 62191955 62191955 G A HELZ2 Silent p.H2459H 0.27 TCGA-F7-A624-01 20 62224425 62224425 A T GMEB2 Silent p.S210S 0.13 TCGA-F7-A624-01 20 62328129 62328129 G A RTEL1 3'Flank 0.46 TCGA-F7-A624-01 20 62493306 62493306 A G ABHD16B Missense_Mutation p.Y138C 0.23 tolerated(0.24) probably_damaging(0.935) TCGA-F7-A624-01 20 62493327 62493327 T A ABHD16B Missense_Mutation p.L145Q 0.19 deleterious(0.01) benign(0.295) TCGA-F7-A624-01 20 62493544 62493544 G A ABHD16B Silent p.Q217Q 0.19 TCGA-F7-A624-01 20 62670278 62670278 C T ZNF512B Intron 0.44 TCGA-F7-A624-01 20 62729402 62729402 G A OPRL1 Missense_Mutation p.V161I 0.26 tolerated(0.14) benign(0.004) TCGA-F7-A624-01 20 62839124 62839124 C A MYT1 Missense_Mutation p.P192H 0.30 benign(0) TCGA-F7-A624-01 20 62848555 62848555 T C MYT1 Silent p.S589S 0.05 TCGA-F7-A624-01 20 629246 629246 G A RP5-850E9.3 3'UTR 0.22 TCGA-F7-A624-01 20 6759038 6759038 A G BMP2 Missense_Mutation p.S165G 0.26 tolerated(0.24) benign(0) TCGA-F7-A624-01 20 9364867 9364867 G A PLCB4 Silent p.G291G 0.20 TCGA-F7-A624-01 20 9510485 9510485 C - LAMP5 3'UTR 0.08 TCGA-F7-A624-01 21 14982750 14982750 C T POTED Silent p.H67H 0.24 TCGA-F7-A624-01 21 15750672 15750672 G A HSPA13 Missense_Mutation p.S143F 0.08 deleterious(0.01) possibly_damaging(0.835) TCGA-F7-A624-01 21 16338609 16338609 T C NRIP1 Silent p.A635A 0.25 TCGA-F7-A624-01 21 17443617 17443617 G T LINC00478 RNA 0.21 TCGA-F7-A624-01 21 19642253 19642253 A G TMPRSS15 3'UTR 0.17 TCGA-F7-A624-01 21 19666640 19666640 G A TMPRSS15 Silent p.G811G 0.23 TCGA-F7-A624-01 21 27078352 27078352 T C JAM2 Silent p.V253V 0.26 TCGA-F7-A624-01 21 27086964 27086964 A G JAM2 3'Flank 0.30 TCGA-F7-A624-01 21 28210880 28210880 T C ADAMTS1 Silent p.G694G 0.24 TCGA-F7-A624-01 21 30380082 30380082 C A RWDD2B Missense_Mutation p.R242I 0.18 deleterious(0) possibly_damaging(0.897) TCGA-F7-A624-01 21 30426569 30426569 G A USP16 3'UTR 0.31 TCGA-F7-A624-01 21 31768625 31768625 G T KRTAP13-1 Missense_Mutation p.S74I 0.15 tolerated(0.08) benign(0.279) TCGA-F7-A624-01 21 32585738 32585738 A G TIAM1 Silent p.F731F 0.15 TCGA-F7-A624-01 21 32595759 32595759 C T TIAM1 Missense_Mutation p.R653H 0.08 deleterious(0) possibly_damaging(0.5) TCGA-F7-A624-01 21 33044429 33044429 G A SCAF4 Silent p.F909F 0.29 TCGA-F7-A624-01 21 34793935 34793935 C G IFNGR2 Missense_Mutation p.L119V 0.23 tolerated(0.13) benign(0.41) TCGA-F7-A624-01 21 34897010 34897010 T C GART Intron 0.23 TCGA-F7-A624-01 21 34953747 34953747 T C DONSON Missense_Mutation p.K404R 0.29 tolerated(0.19) benign(0.346) TCGA-F7-A624-01 21 35257786 35257786 C T ITSN1 Silent p.N1601N 0.24 TCGA-F7-A624-01 21 37742095 37742095 A G MORC3 Missense_Mutation p.D810G 0.31 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 21 38308878 38308878 G A HLCS Silent p.C289C 0.30 TCGA-F7-A624-01 21 38462567 38462567 T C TTC3 Missense_Mutation p.I154T 0.30 deleterious(0.03) possibly_damaging(0.905) TCGA-F7-A624-01 21 40186267 40186267 T C ETS2 Silent p.A85A 0.27 TCGA-F7-A624-01 21 40630422 40630422 G A BRWD1 Missense_Mutation p.P688S 0.26 tolerated(0.06) possibly_damaging(0.651) TCGA-F7-A624-01 21 41385310 41385310 T C DSCAM Missense_Mutation p.D1897G 0.12 deleterious_low_confidence(0.01) benign(0.035) TCGA-F7-A624-01 21 41452138 41452138 T C DSCAM Missense_Mutation p.Q1454R 0.10 tolerated(0.56) benign(0.085) TCGA-F7-A624-01 21 41711055 41711055 T C DSCAM Missense_Mutation p.N500D 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 21 43161737 43161737 G A RIPK4 Missense_Mutation p.T539M 0.15 deleterious(0) benign(0.113) TCGA-F7-A624-01 21 43165917 43165917 A G RIPK4 Splice_Site p.X312_splice 0.32 TCGA-F7-A624-01 21 43411831 43411831 G A ZBTB21 Missense_Mutation p.R792W 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 21 44274700 44274700 C G WDR4 Missense_Mutation p.E255Q 0.22 tolerated(0.06) benign(0.239) TCGA-F7-A624-01 21 44589244 44589244 G A CRYAA Missense_Mutation p.R12H 0.26 deleterious(0) benign(0.057) TCGA-F7-A624-01 21 45168916 45168916 T C PDXK Missense_Mutation p.V140A 0.08 deleterious(0) benign(0.132) TCGA-F7-A624-01 21 45457779 45457779 T C TRAPPC10 Missense_Mutation p.F86L 0.28 tolerated(0.1) benign(0.443) TCGA-F7-A624-01 21 45540617 45540617 T C PWP2 Silent p.F481F 0.08 TCGA-F7-A624-01 21 45555967 45555967 G - C21orf33 Frame_Shift_Del p.A75Lfs*15 0.20 TCGA-F7-A624-01 21 45668930 45668930 C T DNMT3L Missense_Mutation p.S325N 0.19 tolerated(0.15) possibly_damaging(0.771) TCGA-F7-A624-01 21 45745855 45745855 A G PFKL Silent p.P667P 0.28 TCGA-F7-A624-01 21 46057661 46057661 T C KRTAP10-10 Silent p.C109C 0.24 TCGA-F7-A624-01 21 46066709 46066709 C A KRTAP10-11 Missense_Mutation p.P112T 0.10 deleterious(0.03) unknown(0) TCGA-F7-A624-01 21 46950805 46950805 C T SLC19A1 Missense_Mutation p.A344T 0.18 deleterious(0.02) possibly_damaging(0.72) TCGA-F7-A624-01 21 46951392 46951392 T C SLC19A1 Missense_Mutation p.Y287C 0.10 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 21 47360108 47360108 C T PCBP3 Silent p.N358N 0.21 TCGA-F7-A624-01 21 47536294 47536294 G A COL6A2 Missense_Mutation p.V302I 0.30 tolerated(0.49) benign(0.067) TCGA-F7-A624-01 21 47552155 47552155 G A COL6A2 Missense_Mutation p.V917M 0.40 deleterious(0) probably_damaging(0.988) TCGA-F7-A624-01 21 47704204 47704204 G A MCM3AP Missense_Mutation p.R333W 0.21 deleterious(0.02) probably_damaging(0.991) TCGA-F7-A624-01 21 47711253 47711253 G C YBEY Silent p.L72L 0.18 TCGA-F7-A624-01 21 47848441 47848441 C T PCNT Missense_Mutation p.R2543C 0.30 benign(0.269) TCGA-F7-A624-01 21 48019167 48019167 A G S100B 3'UTR 0.24 TCGA-F7-A624-01 22 17071730 17071730 T C CCT8L2 3'UTR 0.18 TCGA-F7-A624-01 22 17265161 17265161 A G XKR3 Missense_Mutation p.F243S 0.12 tolerated(0.84) possibly_damaging(0.887) TCGA-F7-A624-01 22 17589322 17589322 G A IL17RA Missense_Mutation p.A405T 0.27 tolerated(0.16) benign(0.041) TCGA-F7-A624-01 22 17589746 17589746 G A IL17RA Missense_Mutation p.R546H 0.27 deleterious(0) possibly_damaging(0.847) TCGA-F7-A624-01 22 18022173 18022173 A G CECR2 Missense_Mutation p.T760A 0.18 tolerated_low_confidence(0.92) benign(0.004) TCGA-F7-A624-01 22 18111367 18111367 A G ATP6V1E1 Splice_Site p.X11_splice 0.16 TCGA-F7-A624-01 22 18209480 18209480 A G BCL2L13 Missense_Mutation p.Y213C 0.29 tolerated(0.17) benign(0.022) TCGA-F7-A624-01 22 18226677 18226677 C T BID Missense_Mutation p.A85T 0.27 tolerated(0.28) benign(0.055) TCGA-F7-A624-01 22 19373150 19373150 T C HIRA Missense_Mutation p.Q408R 0.25 tolerated(0.23) benign(0.006) TCGA-F7-A624-01 22 19967712 19967712 G A ARVCF Missense_Mutation p.A317V 0.29 tolerated(0.46) benign(0.022) TCGA-F7-A624-01 22 20457913 20457913 G A RIMBP3 Missense_Mutation p.A1130V 0.12 tolerated(0.15) benign(0.175) TCGA-F7-A624-01 22 20796591 20796591 G T KLHL22 Missense_Mutation p.S558R 0.24 tolerated(0.56) benign(0.005) TCGA-F7-A624-01 22 22673463 22673463 C T IGLV5-52 Missense_Mutation p.R86C 0.24 tolerated(0.07) benign(0.166) TCGA-F7-A624-01 22 24177140 24177140 T C DERL3 Intron 0.30 TCGA-F7-A624-01 22 24479268 24479268 T C CABIN1 Missense_Mutation p.C946R 0.38 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 22 24515341 24515341 C T CABIN1 Silent p.N1436N 0.16 TCGA-F7-A624-01 22 24563208 24563208 G A CABIN1 Missense_Mutation p.G1870D 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-F7-A624-01 22 24580231 24580231 G A SUSD2 Silent p.T189T 0.25 TCGA-F7-A624-01 22 24622210 24622210 C - GGT5 Frame_Shift_Del p.E355Rfs*93 0.29 TCGA-F7-A624-01 22 25130079 25130079 C T PIWIL3 Missense_Mutation p.R560Q 0.25 tolerated(1) benign(0.002) TCGA-F7-A624-01 22 25308672 25308672 G A SGSM1 Missense_Mutation p.G1016R 0.18 deleterious(0) probably_damaging(0.988) TCGA-F7-A624-01 22 26829974 26829974 G T ASPHD2 Missense_Mutation p.Q131H 0.21 tolerated(0.17) probably_damaging(0.995) TCGA-F7-A624-01 22 29707852 29707852 C - GAS2L1 3'UTR 0.28 TCGA-F7-A624-01 22 29709625 29709625 A G RASL10A Intron 0.29 TCGA-F7-A624-01 22 30198121 30198121 T C ASCC2 Missense_Mutation p.D477G 0.24 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 22 30408420 30408420 G A MTMR3 Silent p.A395A 0.28 TCGA-F7-A624-01 22 30887920 30887920 C T SEC14L4 Missense_Mutation p.C271Y 0.17 tolerated(0.47) benign(0.042) TCGA-F7-A624-01 22 31522690 31522690 C T INPP5J Missense_Mutation p.P125S 0.21 deleterious(0) possibly_damaging(0.682) TCGA-F7-A624-01 22 31673101 31673101 A G LIMK2 Missense_Mutation p.K679R 0.18 possibly_damaging(0.621) TCGA-F7-A624-01 22 31673219 31673219 G T LIMK2 3'UTR 0.11 TCGA-F7-A624-01 22 31884724 31884724 C T EIF4ENIF1 5'UTR 0.27 TCGA-F7-A624-01 22 32200867 32200867 G A DEPDC5 Missense_Mutation p.D395N 0.22 deleterious(0.03) possibly_damaging(0.545) TCGA-F7-A624-01 22 32756465 32756465 T C RFPL3 Silent p.S200S 0.20 TCGA-F7-A624-01 22 32894221 32894221 T C FBXO7 Missense_Mutation p.Y425H 0.09 tolerated(0.72) benign(0.024) TCGA-F7-A624-01 22 32914204 32914204 T C SYN3 Missense_Mutation p.Q479R 0.27 tolerated(0.22) unknown(0) TCGA-F7-A624-01 22 36650977 36650977 C T APOL1 Intron 0.27 TCGA-F7-A624-01 22 37319379 37319379 T C CSF2RB Missense_Mutation p.V57A 0.28 deleterious(0) benign(0.056) TCGA-F7-A624-01 22 37420635 37420635 C A MPST Missense_Mutation p.L147M 0.22 deleterious(0.02) benign(0.319) TCGA-F7-A624-01 22 37603244 37603244 G A SSTR3 Missense_Mutation p.A200V 0.24 tolerated(0.26) benign(0.276) TCGA-F7-A624-01 22 38026098 38026098 A G GGA1 Missense_Mutation p.S418G 0.23 tolerated(0.11) benign(0.001) TCGA-F7-A624-01 22 38349816 38349816 T C POLR2F Splice_Site p.X7_splice 0.27 TCGA-F7-A624-01 22 38512091 38512091 G C PLA2G6 Missense_Mutation p.Q624E 0.25 tolerated(1) benign(0.005) TCGA-F7-A624-01 22 39135892 39135893 - C SUN2 Frame_Shift_Ins p.R493Pfs*70 0.19 TCGA-F7-A624-01 22 39262377 39262377 C T CBX6 Missense_Mutation p.R359H 0.24 tolerated(0.41) possibly_damaging(0.84) TCGA-F7-A624-01 22 39262787 39262787 T C CBX6 Silent p.T222T 0.16 TCGA-F7-A624-01 22 39822777 39822777 G A TAB1 Missense_Mutation p.V331M 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 22 40054250 40054250 C T CACNA1I Missense_Mutation p.L696F 0.27 tolerated(0.2) possibly_damaging(0.849) TCGA-F7-A624-01 22 40080370 40080370 T C CACNA1I Missense_Mutation p.F1965S 0.23 deleterious(0.02) benign(0.307) TCGA-F7-A624-01 22 40660731 40660731 A G TNRC6B Missense_Mutation p.N166S 0.37 tolerated(0.1) probably_damaging(0.963) TCGA-F7-A624-01 22 40759036 40759036 G A ADSL Silent p.T354T 0.22 TCGA-F7-A624-01 22 40804998 40804998 G A SGSM3 Missense_Mutation p.R655H 0.36 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 22 40807349 40807349 A G MKL1 3'UTR 0.33 TCGA-F7-A624-01 22 41752381 41752382 - A ZC3H7B Frame_Shift_Ins p.H809Tfs*68 0.21 TCGA-F7-A624-01 22 41856422 41856423 - T PHF5A Frame_Shift_Ins p.Y105Ifs*64 0.12 TCGA-F7-A624-01 22 42024155 42024155 T - XRCC6 Frame_Shift_Del p.L41Wfs*17 0.21 TCGA-F7-A624-01 22 42477930 42477930 T C SMDT1 Missense_Mutation p.M63T 0.17 tolerated(0.85) benign(0.017) TCGA-F7-A624-01 22 42539506 42539506 G A NDUFA6-AS1 3'Flank 0.33 TCGA-F7-A624-01 22 43460219 43460219 C T TTLL1 Silent p.T205T 0.18 TCGA-F7-A624-01 22 43465725 43465725 T C TTLL1 Missense_Mutation p.N80S 0.23 deleterious(0) probably_damaging(0.991) TCGA-F7-A624-01 22 44377283 44377283 T C SAMM50 Missense_Mutation p.S317P 0.16 deleterious(0.05) possibly_damaging(0.817) TCGA-F7-A624-01 22 45564053 45564053 G A NUP50 5'UTR 0.21 TCGA-F7-A624-01 22 45574765 45574765 C T NUP50 Silent p.D329D 0.20 TCGA-F7-A624-01 22 45719118 45719118 G A FAM118A Missense_Mutation p.G37D 0.32 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 22 45802679 45802679 T C SMC1B Silent p.E122E 0.22 TCGA-F7-A624-01 22 46239047 46239047 A G ATXN10 Missense_Mutation p.T472A 0.09 tolerated(0.72) benign(0) TCGA-F7-A624-01 22 46685777 46685777 G A TTC38 Missense_Mutation p.V433I 0.28 tolerated(0.22) benign(0.001) TCGA-F7-A624-01 22 46704755 46704755 C T GTSE1 Missense_Mutation p.A226V 0.23 tolerated(0.19) benign(0.007) TCGA-F7-A624-01 22 46752902 46752902 G A TRMU Silent p.%3D 0.25 TCGA-F7-A624-01 22 46787171 46787171 G A CELSR1 Silent p.G2054G 0.28 TCGA-F7-A624-01 22 46790092 46790092 T C CELSR1 Missense_Mutation p.S1971G 0.26 tolerated(0.21) benign(0.012) TCGA-F7-A624-01 22 46795724 46795724 G A CELSR1 Missense_Mutation p.R1768W 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-F7-A624-01 22 46929670 46929670 T C CELSR1 Missense_Mutation p.D1133G 0.05 deleterious(0) possibly_damaging(0.881) TCGA-F7-A624-01 22 46931225 46931225 C T CELSR1 Missense_Mutation p.G615S 0.14 tolerated_low_confidence(0.11) benign(0.053) TCGA-F7-A624-01 22 50280302 50280302 C T ZBED4 Missense_Mutation p.H998Y 0.18 deleterious(0.04) benign(0.006) TCGA-F7-A624-01 22 50599150 50599150 C T MOV10L1 Nonsense_Mutation p.R1120* 0.26 TCGA-F7-A624-01 22 50636360 50636360 C T TRABD Silent p.D260D 0.25 TCGA-F7-A624-01 22 50903743 50903743 G A SBF1 Silent p.R368R 0.31 TCGA-F7-A624-01 22 51064693 51064693 G A ARSA Missense_Mutation p.R290C 0.36 deleterious(0.02) probably_damaging(0.987) TCGA-F7-A624-01 2 100038070 100038070 T C REV1 Silent p.V574V 0.23 TCGA-F7-A624-01 2 101620626 101620626 C A RPL31 Missense_Mutation p.F38L 0.22 deleterious(0.03) benign(0.294) TCGA-F7-A624-01 2 101889484 101889484 C T CNOT11 3'Flank 0.26 TCGA-F7-A624-01 2 102505386 102505386 C T MAP4K4 Missense_Mutation p.R1209C 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F7-A624-01 2 102968388 102968388 C T IL1RL1 3'UTR 0.23 TCGA-F7-A624-01 2 105473172 105473172 G T POU3F3 Missense_Mutation p.A402S 0.25 deleterious(0.02) benign(0.358) TCGA-F7-A624-01 2 105473289 105473289 G A POU3F3 Missense_Mutation p.D441N 0.19 deleterious(0.03) benign(0.108) TCGA-F7-A624-01 2 105705511 105705512 - A MRPS9 Frame_Shift_Ins p.T189Nfs*14 0.18 TCGA-F7-A624-01 2 106497991 106497991 G A NCK2 Missense_Mutation p.S145N 0.29 tolerated(0.44) probably_damaging(0.996) TCGA-F7-A624-01 2 106509493 106509493 T C NCK2 Missense_Mutation p.V335A 0.13 deleterious(0) probably_damaging(0.946) TCGA-F7-A624-01 2 109357008 109357008 C A RANBP2 Missense_Mutation p.F282L 0.22 tolerated(0.23) benign(0) TCGA-F7-A624-01 2 109526938 109526938 T C EDAR Missense_Mutation p.T261A 0.16 tolerated(1) benign(0.001) TCGA-F7-A624-01 2 112779062 112779062 C T MERTK Silent p.G751G 0.27 TCGA-F7-A624-01 2 113090122 113090122 T C ZC3H6 3'UTR 0.21 TCGA-F7-A624-01 2 113181824 113181824 C T RGPD8 Missense_Mutation p.A45T 0.20 deleterious(0) probably_damaging(0.984) TCGA-F7-A624-01 2 113332545 113332545 T - POLR1B Frame_Shift_Del p.F883Lfs*11 0.24 TCGA-F7-A624-01 2 11354567 11354567 T C ROCK2 Silent p.E653E 0.22 TCGA-F7-A624-01 2 118698771 118698771 G A CCDC93 Missense_Mutation p.R506C 0.23 tolerated(0.05) benign(0.39) TCGA-F7-A624-01 2 118698847 118698847 A G CCDC93 Silent p.I480I 0.18 TCGA-F7-A624-01 2 119600542 119600542 G A EN1 Missense_Mutation p.T384M 0.19 deleterious(0) possibly_damaging(0.766) TCGA-F7-A624-01 2 120388409 120388409 T A PCDP1 Missense_Mutation p.S636T 0.29 tolerated(0.07) benign(0.139) TCGA-F7-A624-01 2 120903814 120903814 A G EPB41L5 Missense_Mutation p.D581G 0.26 tolerated(0.1) benign(0.004) TCGA-F7-A624-01 2 121106804 121106804 G A INHBB Missense_Mutation p.S193N 0.23 tolerated(0.58) benign(0.004) TCGA-F7-A624-01 2 121107281 121107281 C T INHBB Missense_Mutation p.T352M 0.28 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 128180493 128180493 C T PROC Silent p.L80L 0.33 TCGA-F7-A624-01 2 128482686 128482686 T C WDR33 Missense_Mutation p.N319D 0.33 deleterious(0.01) unknown(0) TCGA-F7-A624-01 2 130913672 130913672 G A SMPD4 Missense_Mutation p.R448W 0.26 deleterious(0) probably_damaging(0.942) TCGA-F7-A624-01 2 130925042 130925042 T C SMPD4 Missense_Mutation p.T300A 0.23 tolerated(0.06) benign(0.001) TCGA-F7-A624-01 2 131129859 131129859 A G PTPN18 Missense_Mutation p.H348R 0.12 tolerated(0.64) benign(0.001) TCGA-F7-A624-01 2 132021210 132021210 C T POTEE Missense_Mutation p.R728W 0.20 deleterious_low_confidence(0.01) benign(0.236) TCGA-F7-A624-01 2 135926459 135926459 T C RAB3GAP1 3'UTR 0.12 TCGA-F7-A624-01 2 135988280 135988280 T C ZRANB3 Missense_Mutation p.H586R 0.23 tolerated(0.66) benign(0.001) TCGA-F7-A624-01 2 136402990 136402990 A G R3HDM1 Missense_Mutation p.N506D 0.07 deleterious(0) possibly_damaging(0.67) TCGA-F7-A624-01 2 136566157 136566157 G A LCT Nonsense_Mutation p.R1254* 0.21 TCGA-F7-A624-01 2 136575315 136575315 T C LCT Missense_Mutation p.K435E 0.27 deleterious(0.02) probably_damaging(0.914) TCGA-F7-A624-01 2 141607801 141607801 A G LRP1B Silent p.P1603P 0.26 TCGA-F7-A624-01 2 141643877 141643877 G T LRP1B Missense_Mutation p.S1265Y 0.28 possibly_damaging(0.608) TCGA-F7-A624-01 2 145274972 145274972 G A ZEB2 5'UTR 0.27 TCGA-F7-A624-01 2 149511679 149511679 A G EPC2 Missense_Mutation p.T215A 0.25 deleterious(0) possibly_damaging(0.572) TCGA-F7-A624-01 2 151328152 151328152 A T RND3 Missense_Mutation p.S158T 0.18 tolerated(1) possibly_damaging(0.754) TCGA-F7-A624-01 2 152318798 152318798 A C RIF1 Missense_Mutation p.Q1090H 0.25 deleterious(0) probably_damaging(0.928) TCGA-F7-A624-01 2 152417174 152417174 T C NEB Missense_Mutation p.S6416G 0.30 benign(0.139) TCGA-F7-A624-01 2 152419202 152419202 A G NEB Missense_Mutation p.Y6272H 0.26 benign(0.023) TCGA-F7-A624-01 2 152466344 152466345 - T NEB Frame_Shift_Ins p.A4104Gfs*3 0.23 TCGA-F7-A624-01 2 152467061 152467062 - T NEB Frame_Shift_Ins p.S3996Kfs*11 0.22 TCGA-F7-A624-01 2 152536301 152536301 T C NEB Silent p.G1063G 0.24 TCGA-F7-A624-01 2 155711673 155711673 G A KCNJ3 Missense_Mutation p.V452I 0.26 tolerated_low_confidence(0.2) benign(0.015) TCGA-F7-A624-01 2 15696932 15696932 A G NBAS Missense_Mutation p.F62L 0.19 tolerated(0.23) benign(0.004) TCGA-F7-A624-01 2 157406154 157406154 T C GPD2 Silent p.I232I 0.16 TCGA-F7-A624-01 2 158177726 158177726 G T ERMN 3'UTR 0.29 TCGA-F7-A624-01 2 159672354 159672354 C A DAPL1 3'UTR 0.23 TCGA-F7-A624-01 2 160028677 160028677 C A TANC1 Missense_Mutation p.P466Q 0.19 deleterious(0.02) possibly_damaging(0.571) TCGA-F7-A624-01 2 161159980 161159980 T C RBMS1 Missense_Mutation p.T141A 0.20 deleterious(0) probably_damaging(0.962) TCGA-F7-A624-01 2 162751202 162751202 T - SLC4A10 Frame_Shift_Del p.A404Pfs*35 0.29 TCGA-F7-A624-01 2 162902056 162902056 A G DPP4 Missense_Mutation p.Y118H 0.18 tolerated(0.21) benign(0.31) TCGA-F7-A624-01 2 163057115 163057115 T C FAP Missense_Mutation p.N413S 0.34 deleterious(0.01) possibly_damaging(0.607) TCGA-F7-A624-01 2 1652934 1652934 G A PXDN Missense_Mutation p.A873V 0.29 tolerated(0.27) benign(0.199) TCGA-F7-A624-01 2 165947362 165947362 G A SCN3A Silent p.I1767I 0.04 TCGA-F7-A624-01 2 166164384 166164384 C T SCN2A Missense_Mutation p.T138M 0.19 deleterious(0.04) possibly_damaging(0.758) TCGA-F7-A624-01 2 168105300 168105300 A G XIRP2 Silent p.V2466V 0.11 TCGA-F7-A624-01 2 168726367 168726367 G A B3GALT1 Missense_Mutation p.R273Q 0.23 tolerated(0.67) benign(0.021) TCGA-F7-A624-01 2 169718498 169718498 A G NOSTRIN Silent p.R498R 0.09 TCGA-F7-A624-01 2 169847374 169847374 T C ABCB11 Missense_Mutation p.D282G 0.09 deleterious(0) benign(0.248) TCGA-F7-A624-01 2 170058296 170058296 T C LRP2 Missense_Mutation p.D2765G 0.31 probably_damaging(0.984) TCGA-F7-A624-01 2 173344436 173344436 A G ITGA6 Missense_Mutation p.K486E 0.24 tolerated(0.16) benign(0.359) TCGA-F7-A624-01 2 174130844 174130844 G A MLTK Missense_Mutation p.R590H 0.24 tolerated_low_confidence(0.82) benign(0.001) TCGA-F7-A624-01 2 174777830 174777830 T C SP3 Missense_Mutation p.D666G 0.20 deleterious(0) probably_damaging(0.98) TCGA-F7-A624-01 2 175213789 175213789 G A CIR1 Silent p.S263S 0.22 TCGA-F7-A624-01 2 175436854 175436854 C T WIPF1 Missense_Mutation p.G227S 0.25 tolerated(0.32) benign(0.002) TCGA-F7-A624-01 2 176043862 176043862 A G ATP5G3 Silent p.G79G 0.14 TCGA-F7-A624-01 2 176964654 176964654 T C HOXD12 Missense_Mutation p.I42T 0.09 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 2 178080345 178080345 T A HNRNPA3 Missense_Mutation p.L51I 0.13 deleterious(0) possibly_damaging(0.9) TCGA-F7-A624-01 2 178095474 178095475 - A NFE2L2 3'UTR 0.33 TCGA-F7-A624-01 2 178481375 178481375 A - TTC30A 3'UTR 0.53 TCGA-F7-A624-01 2 179402611 179402611 T C TTN Missense_Mutation p.K33108R 0.15 TCGA-F7-A624-01 2 179426382 179426382 A G TTN Silent p.G28159G 0.27 TCGA-F7-A624-01 2 179429620 179429620 A G TTN Missense_Mutation p.F27080S 0.22 TCGA-F7-A624-01 2 179439851 179439851 C T TTN Missense_Mutation p.G23670R 0.36 TCGA-F7-A624-01 2 179463272 179463272 G A TTN Silent p.I19024I 0.24 TCGA-F7-A624-01 2 179498221 179498221 T C TTN Missense_Mutation p.K14289E 0.26 TCGA-F7-A624-01 2 179604505 179604505 T C TTN Missense_Mutation p.I4485M 0.22 TCGA-F7-A624-01 2 179605944 179605944 T C TTN Missense_Mutation p.S4006G 0.29 TCGA-F7-A624-01 2 1796224 1796224 C A MYT1L Nonsense_Mutation p.E1095* 0.10 TCGA-F7-A624-01 2 179720089 179720089 C A CCDC141 Missense_Mutation p.Q1015H 0.25 tolerated(0.14) benign(0.238) TCGA-F7-A624-01 2 182347144 182347144 A G ITGA4 Missense_Mutation p.K300E 0.19 deleterious(0.02) possibly_damaging(0.898) TCGA-F7-A624-01 2 182780567 182780567 C G SSFA2 Missense_Mutation p.L734V 0.20 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 2 187540341 187540341 T C ITGAV Missense_Mutation p.V906A 0.23 tolerated(0.35) benign(0.101) TCGA-F7-A624-01 2 18765359 18765359 C T NT5C1B Missense_Mutation p.V356I 0.21 tolerated(0.21) possibly_damaging(0.832) TCGA-F7-A624-01 2 188332546 188332546 T C TFPI Missense_Mutation p.S248G 0.23 tolerated(0.22) probably_damaging(0.969) TCGA-F7-A624-01 2 1893175 1893175 G A MYT1L Silent p.C784C 0.23 TCGA-F7-A624-01 2 189873756 189873756 A G COL3A1 Missense_Mutation p.E1211G 0.23 unknown(0) TCGA-F7-A624-01 2 190531561 190531561 C T ASNSD1 Silent p.L235L 0.19 TCGA-F7-A624-01 2 190660580 190660580 A T PMS1 Missense_Mutation p.Y73F 0.23 deleterious(0) possibly_damaging(0.794) TCGA-F7-A624-01 2 1926967 1926967 C T MYT1L Missense_Mutation p.D192N 0.24 deleterious(0.03) possibly_damaging(0.864) TCGA-F7-A624-01 2 192711277 192711277 C T SDPR Silent p.T125T 0.34 TCGA-F7-A624-01 2 196788388 196788388 T C DNAH7 Silent p.S1252S 0.13 TCGA-F7-A624-01 2 197184031 197184031 T C HECW2 Missense_Mutation p.D528G 0.10 tolerated_low_confidence(0.35) benign(0) TCGA-F7-A624-01 2 197639891 197639891 C G GTF3C3 Missense_Mutation p.D594H 0.19 deleterious(0.01) benign(0.02) TCGA-F7-A624-01 2 197705898 197705898 T C PGAP1 3'UTR 0.20 TCGA-F7-A624-01 2 198570956 198570956 T A MARS2 Missense_Mutation p.I276N 0.24 deleterious(0) probably_damaging(0.991) TCGA-F7-A624-01 2 198953648 198953648 T C PLCL1 Silent p.L928L 0.26 TCGA-F7-A624-01 2 201437985 201437985 T C SGOL2 Silent p.S972S 0.22 TCGA-F7-A624-01 2 201534320 201534320 T A AOX1 Missense_Mutation p.F1274Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 2 201845893 201845893 A G FAM126B 3'UTR 0.19 TCGA-F7-A624-01 2 202149997 202149997 T C CASP8 Missense_Mutation p.Y480H 0.16 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 202151254 202151254 G - CASP8 Frame_Shift_Del p.K520Nfs*10 0.13 TCGA-F7-A624-01 2 202264170 202264171 AA - TRAK2 Frame_Shift_Del p.L137Kfs*8 0.25 TCGA-F7-A624-01 2 202344901 202344901 C T STRADB 3'UTR 0.21 TCGA-F7-A624-01 2 202626476 202626476 T C ALS2 Missense_Mutation p.S81G 0.11 tolerated(0.15) benign(0.014) TCGA-F7-A624-01 2 203383606 203383606 C T BMPR2 Missense_Mutation p.A228V 0.30 deleterious(0.04) possibly_damaging(0.635) TCGA-F7-A624-01 2 204309667 204309667 A G RAPH1 Missense_Mutation p.V567A 0.25 benign(0.003) TCGA-F7-A624-01 2 204735498 204735498 A T CTLA4 Missense_Mutation p.D100V 0.23 deleterious(0) possibly_damaging(0.795) TCGA-F7-A624-01 2 20497357 20497357 A G PUM2 Silent p.D322D 0.24 TCGA-F7-A624-01 2 205978293 205978293 G A PARD3B Silent p.L224L 0.29 TCGA-F7-A624-01 2 206592754 206592754 A G NRP2 Missense_Mutation p.H377R 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-F7-A624-01 2 207460793 207460793 A G ADAM23 Missense_Mutation p.T756A 0.21 deleterious(0.03) benign(0.065) TCGA-F7-A624-01 2 207619851 207619851 C T MDH1B Silent p.K264K 0.23 TCGA-F7-A624-01 2 208795811 208795811 G A PLEKHM3 Silent p.Y575Y 0.27 TCGA-F7-A624-01 2 210558304 210558304 A G MAP2 Missense_Mutation p.I470M 0.29 tolerated_low_confidence(0.12) benign(0.016) TCGA-F7-A624-01 2 210558823 210558823 T C MAP2 Silent p.S643S 0.25 TCGA-F7-A624-01 2 211085431 211085431 T A ACADL Missense_Mutation p.D58V 0.30 deleterious(0.02) probably_damaging(1) TCGA-F7-A624-01 2 21242616 21242616 T C APOB Missense_Mutation p.Y993C 0.22 probably_damaging(0.947) TCGA-F7-A624-01 2 212578351 212578352 - CTC ERBB4 In_Frame_Ins p.S301_S302insR 0.11 TCGA-F7-A624-01 2 213872491 213872491 G A IKZF2 Nonsense_Mutation p.R392* 0.26 TCGA-F7-A624-01 2 214239796 214239796 G A SPAG16 Missense_Mutation p.A299T 0.21 deleterious(0.02) benign(0.164) TCGA-F7-A624-01 2 216284010 216284010 G T FN1 Missense_Mutation p.R592S 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-F7-A624-01 2 217498647 217498647 G A IGFBP2 Missense_Mutation p.R134H 0.29 tolerated(0.21) benign(0.004) TCGA-F7-A624-01 2 218696257 218696258 - G TNS1 Frame_Shift_Ins p.L975Sfs*37 0.25 TCGA-F7-A624-01 2 219204794 219204794 G A PNKD Missense_Mutation p.S132N 0.18 deleterious(0.03) probably_damaging(0.976) TCGA-F7-A624-01 2 220284873 220284873 G A DES Missense_Mutation p.R212Q 0.25 deleterious(0.04) possibly_damaging(0.852) TCGA-F7-A624-01 2 220315987 220315988 - C SPEG Frame_Shift_Ins p.P751Afs*23 0.17 TCGA-F7-A624-01 2 220348596 220348596 G A SPEG Silent p.E2137E 0.35 TCGA-F7-A624-01 2 224462507 224462507 G A SCG2 Silent p.N498N 0.19 TCGA-F7-A624-01 2 224824585 224824585 A G MRPL44 Missense_Mutation p.N172D 0.07 deleterious(0.02) probably_damaging(0.964) TCGA-F7-A624-01 2 226446754 226446754 C T NYAP2 Silent p.F207F 0.22 TCGA-F7-A624-01 2 228882035 228882035 T C SPHKAP Missense_Mutation p.S1179G 0.13 deleterious(0.03) benign(0.02) TCGA-F7-A624-01 2 231331885 231331885 G A SP100 Missense_Mutation p.A416T 0.23 tolerated(0.71) benign(0.034) TCGA-F7-A624-01 2 231943377 231943377 C T PSMD1 Missense_Mutation p.A359V 0.29 tolerated(0.13) benign(0.082) TCGA-F7-A624-01 2 231948419 231948419 T C PSMD1 Missense_Mutation p.V555A 0.27 tolerated(0.17) benign(0.032) TCGA-F7-A624-01 2 232262574 232262574 C A B3GNT7 Silent p.A48A 0.24 TCGA-F7-A624-01 2 233001426 233001426 T C DIS3L2 Missense_Mutation p.L316P 0.23 tolerated(0.32) benign(0.418) TCGA-F7-A624-01 2 233194612 233194613 - C DIS3L2 Frame_Shift_Ins p.P613Afs*8 0.21 TCGA-F7-A624-01 2 233274406 233274406 A T ALPPL2 Missense_Mutation p.T475S 0.19 tolerated(0.59) benign(0.004) TCGA-F7-A624-01 2 233392148 233392148 T C CHRND Missense_Mutation p.I79T 0.26 deleterious(0) possibly_damaging(0.804) TCGA-F7-A624-01 2 233392981 233392981 G T CHRND Missense_Mutation p.D85Y 0.15 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 233404727 233404727 G T CHRNG Missense_Mutation p.E27D 0.25 tolerated(0.15) benign(0.382) TCGA-F7-A624-01 2 233408002 233408002 A G CHRNG Missense_Mutation p.T275A 0.21 deleterious(0) possibly_damaging(0.459) TCGA-F7-A624-01 2 233944059 233944059 T C INPP5D Missense_Mutation p.V50A 0.12 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 2 233995270 233995270 G A INPP5D Missense_Mutation p.A193T 0.21 tolerated(0.81) benign(0.002) TCGA-F7-A624-01 2 234378054 234378054 T C DGKD Missense_Mutation p.I1198T 0.15 deleterious(0) probably_damaging(0.995) TCGA-F7-A624-01 2 234402104 234402104 A G USP40 Missense_Mutation p.W973R 0.19 tolerated(0.69) benign(0) TCGA-F7-A624-01 2 234638471 234638471 C T UGT1A3 Silent p.S233S 0.09 TCGA-F7-A624-01 2 234652629 234652629 G A UGT1A10 Intron 0.29 TCGA-F7-A624-01 2 234669627 234669627 A G UGT1A8 Intron 0.10 TCGA-F7-A624-01 2 235404658 235404660 CTT - ARL4C In_Frame_Del p.K191del 0.20 TCGA-F7-A624-01 2 235950891 235950891 C T SH3BP4 Missense_Mutation p.T493I 0.26 tolerated(0.08) benign(0.043) TCGA-F7-A624-01 2 235951562 235951562 A G SH3BP4 Missense_Mutation p.K717E 0.23 deleterious(0.02) possibly_damaging(0.626) TCGA-F7-A624-01 2 238244938 238244938 C T COL6A3 Silent p.A2935A 0.23 TCGA-F7-A624-01 2 238274458 238274458 C T COL6A3 Silent p.Q1907Q 0.23 TCGA-F7-A624-01 2 238727040 238727040 C T RBM44 Missense_Mutation p.T494I 0.18 deleterious(0.03) probably_damaging(0.971) TCGA-F7-A624-01 2 238728941 238728941 C T RBM44 Silent p.R621R 0.15 TCGA-F7-A624-01 2 238735902 238735902 A G RBM44 Missense_Mutation p.N821S 0.33 tolerated(0.66) benign(0.024) TCGA-F7-A624-01 2 238990440 238990440 C T SCLY Missense_Mutation p.T200I 0.25 deleterious(0) probably_damaging(0.966) TCGA-F7-A624-01 2 239147618 239147619 - G HES6 Frame_Shift_Ins p.P177Sfs*14 0.17 TCGA-F7-A624-01 2 239355270 239355270 T C ASB1 3'UTR 0.21 TCGA-F7-A624-01 2 240111605 240111605 A T HDAC4 Missense_Mutation p.I88N 0.33 deleterious(0) probably_damaging(0.925) TCGA-F7-A624-01 2 24021108 24021108 A G ATAD2B Missense_Mutation p.V847A 0.30 deleterious(0) possibly_damaging(0.82) TCGA-F7-A624-01 2 240968872 240968872 A G OR6B2 3'UTR 0.20 TCGA-F7-A624-01 2 241534605 241534605 C T CAPN10 Missense_Mutation p.H388Y 0.24 tolerated(1) benign(0.004) TCGA-F7-A624-01 2 241658575 241658575 G A KIF1A Missense_Mutation p.P1688S 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-F7-A624-01 2 242105761 242105761 C T PPP1R7 Silent p.L242L 0.24 TCGA-F7-A624-01 2 242106552 242106552 C T PPP1R7 Intron 0.17 TCGA-F7-A624-01 2 24247074 24247074 A G MFSD2B Missense_Mutation p.I475V 0.15 tolerated(0.1) benign(0.162) TCGA-F7-A624-01 2 242650899 242650899 A - ING5 Frame_Shift_Del p.G131Afs*69 0.18 TCGA-F7-A624-01 2 242680504 242680504 A G D2HGDH Missense_Mutation p.R117G 0.11 deleterious(0.02) possibly_damaging(0.716) TCGA-F7-A624-01 2 242757535 242757535 G A NEU4 Missense_Mutation p.G219S 0.45 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 24428137 24428137 G A ITSN2 Missense_Mutation p.R1570C 0.31 deleterious(0) unknown(0) TCGA-F7-A624-01 2 25384061 25384061 C T POMC Silent p.P231P 0.17 TCGA-F7-A624-01 2 25967275 25967275 A G ASXL2 Missense_Mutation p.V644A 0.27 tolerated(0.54) benign(0.008) TCGA-F7-A624-01 2 26357811 26357811 C A RAB10 Missense_Mutation p.P175H 0.21 tolerated(0.06) benign(0.021) TCGA-F7-A624-01 2 26534142 26534142 G A GPR113 Silent p.C818C 0.17 TCGA-F7-A624-01 2 26667099 26667099 T C DRC1 Silent p.D346D 0.24 TCGA-F7-A624-01 2 26680837 26680837 T C OTOF 3'UTR 0.06 TCGA-F7-A624-01 2 27303108 27303108 G - EMILIN1 Frame_Shift_Del p.G88Afs*26 0.22 TCGA-F7-A624-01 2 27322364 27322364 G A KHK Missense_Mutation p.A244T 0.28 tolerated(0.11) benign(0.367) TCGA-F7-A624-01 2 27351946 27351946 G T ABHD1 Missense_Mutation p.D137Y 0.24 deleterious(0) benign(0.416) TCGA-F7-A624-01 2 27500629 27500629 G A DNAJC5G Missense_Mutation p.A41T 0.22 tolerated_low_confidence(0.53) benign(0) TCGA-F7-A624-01 2 27528642 27528642 C T TRIM54 Missense_Mutation p.A309V 0.38 deleterious(0.03) probably_damaging(0.944) TCGA-F7-A624-01 2 27800372 27800372 C T C2orf16 Silent p.L311L 0.26 TCGA-F7-A624-01 2 27800482 27800482 C T C2orf16 Missense_Mutation p.S348L 0.23 tolerated(0.13) benign(0.181) TCGA-F7-A624-01 2 28763274 28763274 G A PLB1 Missense_Mutation p.R247Q 0.18 tolerated(0.18) benign(0.016) TCGA-F7-A624-01 2 29258406 29258406 C T FAM179A Missense_Mutation p.R768W 0.38 deleterious(0) probably_damaging(0.915) TCGA-F7-A624-01 2 29294162 29294162 G - C2orf71 Frame_Shift_Del p.P989Lfs*46 0.32 TCGA-F7-A624-01 2 29443576 29443576 C T ALK Missense_Mutation p.R1214H 0.20 tolerated(0.21) benign(0.095) TCGA-F7-A624-01 2 31489200 31489200 C T EHD3 Missense_Mutation p.A413V 0.24 deleterious(0.04) benign(0.018) TCGA-F7-A624-01 2 32108519 32108519 C T MEMO1 Missense_Mutation p.R198H 0.23 tolerated(0.41) benign(0.005) TCGA-F7-A624-01 2 32400414 32400414 A G SLC30A6 Missense_Mutation p.I68V 0.47 tolerated(0.27) benign(0.06) TCGA-F7-A624-01 2 32640742 32640742 A C BIRC6 Missense_Mutation p.N795H 0.46 benign(0.054) TCGA-F7-A624-01 2 32750697 32750697 T C BIRC6 Splice_Site p.X3974_splice 0.16 TCGA-F7-A624-01 2 33745628 33745628 T C RASGRP3 Missense_Mutation p.I82T 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-F7-A624-01 2 33752314 33752315 - A RASGRP3 Frame_Shift_Ins p.D308Rfs*32 0.20 TCGA-F7-A624-01 2 33952131 33952131 C T AC009499.1 Intron 0.24 TCGA-F7-A624-01 2 3502803 3502803 C T ADI1 Silent p.A157A 0.27 TCGA-F7-A624-01 2 36774272 36774272 A G CRIM1 Silent p.K964K 0.23 TCGA-F7-A624-01 2 37267572 37267572 A G HEATR5B Silent p.L982L 0.22 TCGA-F7-A624-01 2 3750034 3750034 G A ALLC Missense_Mutation p.V353I 0.26 tolerated(0.38) benign(0.005) TCGA-F7-A624-01 2 38570428 38570428 A G ATL2 Silent p.L115L 0.28 TCGA-F7-A624-01 2 39025411 39025411 T C DHX57 3'UTR 0.24 TCGA-F7-A624-01 2 40397459 40397459 C G SLC8A1 Missense_Mutation p.R667T 0.10 tolerated(0.25) benign(0.101) TCGA-F7-A624-01 2 44073331 44073331 T C ABCG8 Missense_Mutation p.L68P 0.29 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 2 44428821 44428821 A G PPM1B Silent p.Q161Q 0.28 TCGA-F7-A624-01 2 44436511 44436511 A G PPM1B Intron 0.35 TCGA-F7-A624-01 2 44586917 44586917 T C PREPL 5'UTR 0.17 TCGA-F7-A624-01 2 45235822 45235822 T C SIX2 Missense_Mutation p.Y143C 0.12 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 46587855 46587855 A G EPAS1 Missense_Mutation p.N178S 0.21 tolerated(0.93) benign(0.053) TCGA-F7-A624-01 2 47635647 47635647 G A MSH2 Missense_Mutation p.A107T 0.29 tolerated(0.17) benign(0.047) TCGA-F7-A624-01 2 47672711 47672711 C T MSH2 Missense_Mutation p.A434V 0.16 tolerated(0.14) benign(0.297) TCGA-F7-A624-01 2 47748557 47748557 T C KCNK12 Missense_Mutation p.D261G 0.11 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 48026783 48026783 G A MSH6 Missense_Mutation p.R554H 0.33 tolerated(0.23) probably_damaging(0.999) TCGA-F7-A624-01 2 48066778 48066778 T C FBXO11 Intron 0.12 TCGA-F7-A624-01 2 48600444 48600446 TGC - FOXN2 In_Frame_Del p.A243del 0.13 TCGA-F7-A624-01 2 48869597 48869597 G C STON1-GTF2A1L Splice_Site p.X805_splice 0.19 TCGA-F7-A624-01 2 48914783 48914783 T - LHCGR 3'UTR 0.32 TCGA-F7-A624-01 2 54101589 54101589 T C PSME4 Missense_Mutation p.T1663A 0.23 tolerated(0.51) benign(0.09) TCGA-F7-A624-01 2 55254564 55254564 A G RTN4 Missense_Mutation p.F224S 0.23 deleterious(0) probably_damaging(0.968) TCGA-F7-A624-01 2 55914784 55914784 A G PNPT1 Missense_Mutation p.V73A 0.15 tolerated(0.64) benign(0.003) TCGA-F7-A624-01 2 62066963 62066963 T C FAM161A Silent p.L392L 0.24 TCGA-F7-A624-01 2 62096656 62096656 A G CCT4 Silent p.V508V 0.21 TCGA-F7-A624-01 2 62099690 62099690 T C CCT4 Missense_Mutation p.T387A 0.25 deleterious(0.01) possibly_damaging(0.64) TCGA-F7-A624-01 2 63206435 63206435 C T EHBP1 Missense_Mutation p.A893V 0.19 tolerated_low_confidence(0.08) benign(0.119) TCGA-F7-A624-01 2 63282711 63282713 AAG - OTX1 In_Frame_Del p.K111del 0.27 TCGA-F7-A624-01 2 65480896 65480896 T C ACTR2 Silent p.D166D 0.08 TCGA-F7-A624-01 2 65561814 65561814 G A SPRED2 Missense_Mutation p.L100F 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 69092780 69092780 C T BMP10 Missense_Mutation p.E420K 0.25 deleterious(0.02) possibly_damaging(0.901) TCGA-F7-A624-01 2 70123669 70123669 G A SNRNP27 Missense_Mutation p.R86Q 0.09 tolerated(0.43) unknown(0) TCGA-F7-A624-01 2 71036435 71036435 T C CLEC4F Missense_Mutation p.T580A 0.34 tolerated_low_confidence(0.55) benign(0.012) TCGA-F7-A624-01 2 71043570 71043570 C T CLEC4F Missense_Mutation p.A315T 0.20 tolerated(0.08) possibly_damaging(0.772) TCGA-F7-A624-01 2 71163099 71163099 A G ATP6V1B1 Missense_Mutation p.I5M 0.29 deleterious_low_confidence(0) benign(0) TCGA-F7-A624-01 2 71653961 71653961 C T ZNF638 Silent p.C1654C 0.25 TCGA-F7-A624-01 2 72740281 72740281 C T EXOC6B Missense_Mutation p.A383T 0.32 tolerated(0.21) probably_damaging(0.993) TCGA-F7-A624-01 2 73868455 73868455 A G NAT8 Missense_Mutation p.Y101H 0.18 deleterious(0) probably_damaging(0.987) TCGA-F7-A624-01 2 74650994 74650994 G C WDR54 Missense_Mutation p.G140A 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 74702467 74702467 A G CCDC142 Silent p.L554L 0.27 TCGA-F7-A624-01 2 74733873 74733873 G T PCGF1 Missense_Mutation p.P113H 0.25 deleterious(0) probably_damaging(0.988) TCGA-F7-A624-01 2 74742952 74742952 A G TLX2 Missense_Mutation p.D198G 0.19 deleterious(0.04) probably_damaging(0.994) TCGA-F7-A624-01 2 74750494 74750494 G A DQX1 Silent p.F329F 0.22 TCGA-F7-A624-01 2 80136806 80136806 C T CTNNA2 Silent p.G313G 0.24 TCGA-F7-A624-01 2 85280508 85280508 T C KCMF1 Silent p.N374N 0.25 TCGA-F7-A624-01 2 85769463 85769463 G A MAT2A Silent p.Q245Q 0.17 TCGA-F7-A624-01 2 86067278 86067278 G A ST3GAL5 Missense_Mutation p.R416C 0.23 tolerated(1) benign(0) TCGA-F7-A624-01 2 86305002 86305002 T C POLR1A Missense_Mutation p.N454D 0.25 tolerated(0.4) probably_damaging(0.986) TCGA-F7-A624-01 2 88422623 88422623 T C FABP1 Missense_Mutation p.T112A 0.27 tolerated(0.07) benign(0.123) TCGA-F7-A624-01 2 88472781 88472781 T C THNSL2 Silent p.L38L 0.28 TCGA-F7-A624-01 2 88870488 88870488 G A EIF2AK3 Silent p.D963D 0.23 TCGA-F7-A624-01 2 89157073 89157073 T C IGKC Missense_Mutation p.K42R 0.28 deleterious(0.04) benign(0.338) TCGA-F7-A624-01 2 9347300 9347300 G A ASAP2 Missense_Mutation p.A23T 0.28 tolerated(1) benign(0.02) TCGA-F7-A624-01 2 9528450 9528450 C T ASAP2 Missense_Mutation p.P720S 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-F7-A624-01 2 9528643 9528643 C - ASAP2 Frame_Shift_Del p.P786Rfs*25 0.27 TCGA-F7-A624-01 2 9576380 9576380 A G CPSF3 Missense_Mutation p.E217G 0.27 tolerated(0.06) benign(0.253) TCGA-F7-A624-01 2 9582061 9582061 G A CPSF3 Missense_Mutation p.G351S 0.29 tolerated(0.08) probably_damaging(0.909) TCGA-F7-A624-01 2 95847832 95847832 A G ZNF2 Missense_Mutation p.Y420C 0.23 deleterious(0) probably_damaging(0.957) TCGA-F7-A624-01 2 96956475 96956475 A G SNRNP200 Missense_Mutation p.Y834H 0.10 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 2 97490844 97490844 C T CNNM3 Silent p.G425G 0.20 TCGA-F7-A624-01 2 99012708 99012708 T C CNGA3 Missense_Mutation p.S359P 0.22 deleterious(0) probably_damaging(0.942) TCGA-F7-A624-01 2 99013682 99013682 C T CNGA3 Silent p.P683P 0.30 TCGA-F7-A624-01 2 99149904 99149904 C T INPP4A Silent p.V72V 0.24 TCGA-F7-A624-01 2 99242041 99242041 T - MGAT4A Frame_Shift_Del p.A533Pfs*19 0.14 TCGA-F7-A624-01 2 99949571 99949571 T C TXNDC9 Missense_Mutation p.K35E 0.09 deleterious(0.04) benign(0.115) TCGA-F7-A624-01 2 99977764 99977764 T C EIF5B Missense_Mutation p.Y134H 0.27 benign(0.035) TCGA-F7-A624-01 3 100074153 100074153 T C NIT2 3'UTR 0.26 TCGA-F7-A624-01 3 100087929 100087929 T C TOMM70A Silent p.K501K 0.20 TCGA-F7-A624-01 3 100362380 100362380 T C GPR128 Silent p.S283S 0.26 TCGA-F7-A624-01 3 10081025 10081025 G C FANCD2 Missense_Mutation p.R185T 0.22 deleterious(0) possibly_damaging(0.662) TCGA-F7-A624-01 3 101576014 101576014 T C NFKBIZ Missense_Mutation p.F641S 0.20 deleterious(0.02) possibly_damaging(0.704) TCGA-F7-A624-01 3 108725919 108725919 T A MORC1 Missense_Mutation p.D575V 0.22 deleterious(0.05) benign(0.021) TCGA-F7-A624-01 3 108788570 108788570 A T MORC1 Missense_Mutation p.S242T 0.26 deleterious(0.05) benign(0.238) TCGA-F7-A624-01 3 111849438 111849438 T C GCSAM Intron 0.24 TCGA-F7-A624-01 3 112648055 112648055 A G CD200R1 Missense_Mutation p.Y168H 0.29 tolerated(0.09) probably_damaging(0.998) TCGA-F7-A624-01 3 112648188 112648188 A G CD200R1 Silent p.C123C 0.26 TCGA-F7-A624-01 3 112730221 112730221 A G C3orf17 Missense_Mutation p.I195T 0.28 tolerated(0.31) benign(0.019) TCGA-F7-A624-01 3 113507640 113507640 A T ATP6V1A Missense_Mutation p.Y266F 0.31 tolerated(0.67) benign(0.011) TCGA-F7-A624-01 3 113684127 113684127 G A KIAA1407 Nonsense_Mutation p.R896* 0.32 TCGA-F7-A624-01 3 113804627 113804627 C T QTRTD1 Missense_Mutation p.A387V 0.26 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.25 TCGA-F7-A624-01 3 116163801 116163801 T C LSAMP Silent p.G26G 0.28 TCGA-F7-A624-01 3 119217499 119217499 T C TIMMDC1 5'UTR 0.25 TCGA-F7-A624-01 3 119217736 119217736 A G TIMMDC1 Silent p.E52E 0.26 TCGA-F7-A624-01 3 119325767 119325767 C A PLA1A Missense_Mutation p.Q74K 0.25 tolerated(0.63) benign(0.034) TCGA-F7-A624-01 3 119545532 119545532 A T GSK3B 3'Flank 0.40 TCGA-F7-A624-01 3 119631553 119631553 A G GSK3B Missense_Mutation p.I238T 0.25 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 3 120401068 120401068 T C HGD 5'UTR 0.31 TCGA-F7-A624-01 3 121351340 121351340 T C HCLS1 Missense_Mutation p.Y360C 0.26 deleterious(0.01) possibly_damaging(0.759) TCGA-F7-A624-01 3 121712409 121712409 T C ILDR1 Missense_Mutation p.D396G 0.26 deleterious(0.05) probably_damaging(0.992) TCGA-F7-A624-01 3 122003904 122003904 C G CASR Missense_Mutation p.P1045A 0.25 tolerated_low_confidence(0.42) benign(0.005) TCGA-F7-A624-01 3 122487712 122487712 T C HSPBAP1 Missense_Mutation p.T90A 0.21 tolerated(0.72) benign(0.008) TCGA-F7-A624-01 3 123419195 123419195 G A MYLK Silent p.N1040N 0.26 TCGA-F7-A624-01 3 123471338 123471338 T C MYLK Silent p.Q71Q 0.27 TCGA-F7-A624-01 3 124053293 124053293 G A KALRN Missense_Mutation p.R531Q 0.22 deleterious(0.01) unknown(0) TCGA-F7-A624-01 3 124641065 124641065 C T MUC13 Silent p.L240L 0.22 TCGA-F7-A624-01 3 124646509 124646509 A G MUC13 Silent p.D127D 0.25 TCGA-F7-A624-01 3 125249420 125249420 T C OSBPL11 Missense_Mutation p.D728G 0.29 deleterious(0.04) benign(0.403) TCGA-F7-A624-01 3 125271230 125271230 A T OSBPL11 Missense_Mutation p.N483K 0.41 tolerated(0.54) benign(0.023) TCGA-F7-A624-01 3 125741708 125741708 C T SLC41A3 Silent p.T222T 0.28 TCGA-F7-A624-01 3 126260867 126260867 G T CHST13 Missense_Mutation p.A158S 0.35 tolerated(0.41) possibly_damaging(0.643) TCGA-F7-A624-01 3 126724000 126724000 C T PLXNA1 Missense_Mutation p.T604M 0.32 tolerated(0.09) benign(0.354) TCGA-F7-A624-01 3 126749132 126749132 G C PLXNA1 Missense_Mutation p.S1703T 0.24 tolerated(0.06) benign(0.43) TCGA-F7-A624-01 3 129236439 129236439 T C IFT122 Splice_Site p.X1182_splice 0.26 TCGA-F7-A624-01 3 129291683 129291683 A G PLXND1 Splice_Site p.X979_splice 0.17 TCGA-F7-A624-01 3 12977561 12977561 G A IQSEC1 Missense_Mutation p.R333W 0.26 tolerated_low_confidence(0.11) possibly_damaging(0.677) TCGA-F7-A624-01 3 130381066 130381066 A G COL6A6 Missense_Mutation p.H2139R 0.21 deleterious(0.01) benign(0.254) TCGA-F7-A624-01 3 130744027 130744027 T C ASTE1 Missense_Mutation p.S42G 0.20 tolerated(0.08) benign(0.03) TCGA-F7-A624-01 3 132202402 132202402 T C DNAJC13 Missense_Mutation p.C1055R 0.28 deleterious(0) probably_damaging(0.957) TCGA-F7-A624-01 3 132209834 132209834 T - DNAJC13 Frame_Shift_Del p.S1189Lfs*5 0.19 TCGA-F7-A624-01 3 132360899 132360899 T C ACAD11 Missense_Mutation p.T152A 0.22 tolerated(0.28) benign(0.084) TCGA-F7-A624-01 3 133878201 133878201 G A RYK Missense_Mutation p.T532M 0.23 tolerated(0.21) benign(0.282) TCGA-F7-A624-01 3 134338061 134338061 T G KY Missense_Mutation p.K213N 0.34 tolerated(0.17) possibly_damaging(0.617) TCGA-F7-A624-01 3 13679345 13679345 A G FBLN2 Missense_Mutation p.K1208E 0.06 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 3 139077983 139077983 T C COPB2 Missense_Mutation p.N781D 0.20 deleterious(0.05) benign(0.359) TCGA-F7-A624-01 3 139096923 139096923 T C COPB2 Missense_Mutation p.N155S 0.25 tolerated(0.36) possibly_damaging(0.85) TCGA-F7-A624-01 3 140282029 140282029 C T CLSTN2 Silent p.S822S 0.12 TCGA-F7-A624-01 3 140407245 140407245 A G TRIM42 Missense_Mutation p.Y574C 0.04 tolerated(0.1) probably_damaging(0.987) TCGA-F7-A624-01 3 141622465 141622465 T C ATP1B3 Missense_Mutation p.L38S 0.23 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 3 14199968 14199968 G A XPC Missense_Mutation p.A472V 0.20 tolerated(0.15) benign(0.013) TCGA-F7-A624-01 3 142542377 142542377 A G PCOLCE2 Missense_Mutation p.F316L 0.16 tolerated(0.31) benign(0.162) TCGA-F7-A624-01 3 142681980 142681980 G A PAQR9 Missense_Mutation p.P67S 0.34 tolerated(0.37) benign(0.009) TCGA-F7-A624-01 3 142840276 142840276 G C CHST2 Silent p.P206P 0.27 TCGA-F7-A624-01 3 143185939 143185939 A G SLC9A9 Missense_Mutation p.F470S 0.16 deleterious(0.01) possibly_damaging(0.608) TCGA-F7-A624-01 3 143185960 143185960 G A SLC9A9 Missense_Mutation p.T463I 0.30 deleterious(0.02) benign(0.134) TCGA-F7-A624-01 3 147128060 147128060 A G ZIC1 Missense_Mutation p.H54R 0.30 deleterious(0.05) possibly_damaging(0.898) TCGA-F7-A624-01 3 150290239 150290239 C T EIF2A Missense_Mutation p.P436S 0.06 tolerated(0.39) benign(0.022) TCGA-F7-A624-01 3 151531957 151531957 A G AADAC Missense_Mutation p.R3G 0.28 tolerated(0.32) benign(0.003) TCGA-F7-A624-01 3 15274052 15274052 T C CAPN7 Silent p.V353V 0.22 TCGA-F7-A624-01 3 155206586 155206586 G A PLCH1 Missense_Mutation p.P789L 0.11 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 3 155632272 155632272 A G GMPS Silent p.R317R 0.29 TCGA-F7-A624-01 3 155654227 155654227 T C GMPS Silent p.V636V 0.12 TCGA-F7-A624-01 3 158399976 158399976 T C GFM1 Intron 0.31 TCGA-F7-A624-01 3 164697201 164697201 C T SI Silent p.L1811L 0.10 TCGA-F7-A624-01 3 16646731 16646731 T C DAZL 5'Flank 0.22 TCGA-F7-A624-01 3 167405034 167405034 A G PDCD10 Missense_Mutation p.F182S 0.33 deleterious(0) probably_damaging(0.986) TCGA-F7-A624-01 3 169482478 169482478 T C ACTRT3 3'Flank 0.16 TCGA-F7-A624-01 3 170150423 170150423 G A CLDN11 Missense_Mutation p.C168Y 0.25 deleterious(0) possibly_damaging(0.761) TCGA-F7-A624-01 3 170802065 170802065 T C TNIK Silent p.E1016E 0.28 TCGA-F7-A624-01 3 171405176 171405176 T C PLD1 Missense_Mutation p.I580V 0.27 tolerated(0.63) benign(0.002) TCGA-F7-A624-01 3 171406539 171406539 T C PLD1 Missense_Mutation p.D489G 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-F7-A624-01 3 173525572 173525573 - T NLGN1 Frame_Shift_Ins p.Y200Lfs*34 0.17 TCGA-F7-A624-01 3 176752112 176752112 A T TBL1XR1 Missense_Mutation p.I375K 0.27 deleterious(0) probably_damaging(0.962) TCGA-F7-A624-01 3 178543536 178543536 T A KCNMB2 Missense_Mutation p.Y73N 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-F7-A624-01 3 178942528 178942528 C T PIK3CA Silent p.L779L 0.16 TCGA-F7-A624-01 3 179080157 179080157 A G MFN1 Silent p.Q141Q 0.19 TCGA-F7-A624-01 3 179310503 179310503 T C MRPL47 Missense_Mutation p.I186M 0.22 tolerated(0.06) benign(0.217) TCGA-F7-A624-01 3 182631660 182631660 A G ATP11B Silent p.T1110T 0.27 TCGA-F7-A624-01 3 183521949 183521949 G - YEATS2 Frame_Shift_Del p.V1253Cfs*2 0.23 TCGA-F7-A624-01 3 183584466 183584466 C T PARL Missense_Mutation p.A137T 0.16 tolerated(0.08) benign(0.015) TCGA-F7-A624-01 3 183585695 183585695 A G PARL Silent p.Y93Y 0.10 TCGA-F7-A624-01 3 183774697 183774697 G A HTR3C Missense_Mutation p.A142T 0.20 deleterious(0.04) benign(0.25) TCGA-F7-A624-01 3 183824529 183824529 G A HTR3E 3'Flank 0.23 TCGA-F7-A624-01 3 183884283 183884283 T C DVL3 Missense_Mutation p.V318A 0.28 deleterious(0) probably_damaging(0.993) TCGA-F7-A624-01 3 183967525 183967525 G A ECE2 Missense_Mutation p.E15K 0.27 deleterious_low_confidence(0.02) benign(0.001) TCGA-F7-A624-01 3 184038716 184038716 C T EIF4G1 Missense_Mutation p.T218M 0.28 deleterious(0.02) possibly_damaging(0.609) TCGA-F7-A624-01 3 184072050 184072050 G A CLCN2 Silent p.I520I 0.31 TCGA-F7-A624-01 3 184105783 184105783 T C CHRD Missense_Mutation p.V839A 0.24 deleterious(0.02) possibly_damaging(0.454) TCGA-F7-A624-01 3 184297495 184297495 C T EPHB3 Missense_Mutation p.R649C 0.22 deleterious(0.02) probably_damaging(0.962) TCGA-F7-A624-01 3 185431246 185431246 C T C3orf65 Missense_Mutation p.P11S 0.10 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-F7-A624-01 3 185636151 185636151 A G TRA2B Splice_Site p.X286_splice 0.24 TCGA-F7-A624-01 3 185986616 185986616 G A DGKG Missense_Mutation p.R364W 0.15 deleterious(0.01) benign(0.006) TCGA-F7-A624-01 3 186505421 186505421 G T EIF4A2 Intron 0.19 TCGA-F7-A624-01 3 186761056 186761056 T C ST6GAL1 Missense_Mutation p.S189P 0.19 probably_damaging(0.991) TCGA-F7-A624-01 3 186944294 186944294 C T MASP1 Missense_Mutation p.V486M 0.17 deleterious(0.01) possibly_damaging(0.777) TCGA-F7-A624-01 3 187447147 187447147 C T BCL6 Missense_Mutation p.S349N 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-F7-A624-01 3 190106202 190106202 T C CLDN16 Silent p.C98C 0.24 TCGA-F7-A624-01 3 190347252 190347252 G A IL1RAP Missense_Mutation p.G339D 0.15 deleterious(0.03) probably_damaging(0.941) TCGA-F7-A624-01 3 192078265 192078265 G A FGF12 Missense_Mutation p.H88Y 0.06 tolerated(0.25) benign(0.024) TCGA-F7-A624-01 3 192516295 192516295 G T MB21D2 Missense_Mutation p.D452E 0.23 tolerated(0.36) benign(0.014) TCGA-F7-A624-01 3 193377314 193377314 G C OPA1 Missense_Mutation p.K810N 0.36 deleterious(0.04) benign(0.063) TCGA-F7-A624-01 3 194062731 194062731 G - CPN2 Frame_Shift_Del p.P234Lfs*10 0.30 TCGA-F7-A624-01 3 194373792 194373792 T C LSG1 Missense_Mutation p.H280R 0.26 tolerated(0.49) benign(0) TCGA-F7-A624-01 3 195269829 195269829 G A PPP1R2 Missense_Mutation p.S7L 0.27 tolerated(0.08) benign(0.013) TCGA-F7-A624-01 3 195785204 195785204 G T TFRC Missense_Mutation p.P543H 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 3 195796404 195796404 T - TFRC Frame_Shift_Del p.D242Ifs*9 0.29 TCGA-F7-A624-01 3 196088753 196088753 T - UBXN7 Frame_Shift_Del p.R424Gfs*13 0.20 TCGA-F7-A624-01 3 196234827 196234827 C - SMCO1 Frame_Shift_Del p.A194Qfs*15 0.29 TCGA-F7-A624-01 3 196735731 196735731 T C MFI2 Missense_Mutation p.K544R 0.07 tolerated(0.07) possibly_damaging(0.775) TCGA-F7-A624-01 3 196792280 196792280 C G DLG1 Missense_Mutation p.R780T 0.30 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 3 197639589 197639589 C T IQCG Missense_Mutation p.R307Q 0.23 tolerated(0.14) benign(0.426) TCGA-F7-A624-01 3 19975431 19975431 G A EFHB Missense_Mutation p.P27L 0.22 deleterious_low_confidence(0.05) benign(0.393) TCGA-F7-A624-01 3 20153137 20153137 T C KAT2B Missense_Mutation p.Y301H 0.22 tolerated(0.22) benign(0.329) TCGA-F7-A624-01 3 21478595 21478595 G A ZNF385D Silent p.S180S 0.17 TCGA-F7-A624-01 3 23942526 23942526 C T NKIRAS1 Missense_Mutation p.E37K 0.23 tolerated(0.33) benign(0.009) TCGA-F7-A624-01 3 27243970 27243970 C T NEK10 Silent p.A723A 0.22 TCGA-F7-A624-01 3 27353644 27353644 A G NEK10 Missense_Mutation p.Y172H 0.30 tolerated(0.07) probably_damaging(0.947) TCGA-F7-A624-01 3 33135624 33135624 C T TMPPE Missense_Mutation p.V22M 0.16 tolerated_low_confidence(0.25) benign(0.013) TCGA-F7-A624-01 3 33195265 33195265 G A SUSD5 Missense_Mutation p.R287W 0.31 deleterious(0.04) possibly_damaging(0.634) TCGA-F7-A624-01 3 33644452 33644452 G A CLASP2 Missense_Mutation p.A640V 0.41 deleterious(0.01) benign(0.356) TCGA-F7-A624-01 3 35778820 35778820 C T ARPP21 Missense_Mutation p.P503L 0.18 tolerated(0.08) benign(0.135) TCGA-F7-A624-01 3 37042542 37042542 G T MLH1 Nonsense_Mutation p.E102* 0.56 TCGA-F7-A624-01 3 37107713 37107713 A G LRRFIP2 Splice_Site p.X522_splice 0.25 TCGA-F7-A624-01 3 37565066 37565066 T G ITGA9 Missense_Mutation p.S431A 0.22 tolerated(0.1) probably_damaging(0.992) TCGA-F7-A624-01 3 37574875 37574875 T C ITGA9 Missense_Mutation p.C482R 0.25 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 3 38591639 38591639 C G SCN5A 3'UTR 0.30 TCGA-F7-A624-01 3 38591651 38591651 G A SCN5A 3'UTR 0.27 TCGA-F7-A624-01 3 38739798 38739798 A G SCN10A Missense_Mutation p.I1638T 0.23 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 3 3887524 3887524 C T LRRN1 Missense_Mutation p.A400V 0.21 tolerated(0.73) benign(0.025) TCGA-F7-A624-01 3 39543701 39543701 T C MOBP Silent p.C47C 0.22 TCGA-F7-A624-01 3 40433581 40433581 A T ENTPD3 Silent p.V36V 0.20 TCGA-F7-A624-01 3 41266654 41266654 C T CTNNB1 Missense_Mutation p.R151C 0.21 deleterious(0) possibly_damaging(0.745) TCGA-F7-A624-01 3 41938363 41938363 A G ULK4 Missense_Mutation p.V494A 0.23 tolerated(0.28) benign(0.001) TCGA-F7-A624-01 3 41977350 41977350 A G ULK4 Silent p.S107S 0.09 TCGA-F7-A624-01 3 42703044 42703044 G A ZBTB47 Missense_Mutation p.G514D 0.23 deleterious(0) unknown(0) TCGA-F7-A624-01 3 42793489 42793489 G A CCDC13 Missense_Mutation p.A181V 0.19 tolerated(0.17) possibly_damaging(0.628) TCGA-F7-A624-01 3 42916116 42916116 G A CYP8B1 Missense_Mutation p.P398L 0.06 deleterious(0) probably_damaging(0.936) TCGA-F7-A624-01 3 42950329 42950329 C T ZNF662 Nonsense_Mutation p.R87* 0.28 TCGA-F7-A624-01 3 4355021 4355021 A G SETMAR Missense_Mutation p.H199R 0.09 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-F7-A624-01 3 44611629 44611629 G A ZKSCAN7 Missense_Mutation p.D343N 0.29 tolerated(0.42) benign(0.035) TCGA-F7-A624-01 3 44903590 44903590 G A TMEM42 Silent p.K58K 0.25 TCGA-F7-A624-01 3 45814020 45814020 G T SLC6A20 Missense_Mutation p.L224I 0.25 tolerated(0.36) benign(0.047) TCGA-F7-A624-01 3 46399634 46399634 A G CCR2 Missense_Mutation p.R206G 0.24 deleterious(0) possibly_damaging(0.698) TCGA-F7-A624-01 3 46449604 46449604 T A CCRL2 Missense_Mutation p.Y24N 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 3 46574323 46574323 A G LRRC2 Silent p.C189C 0.18 TCGA-F7-A624-01 3 46580564 46580564 T - LRRC2 Frame_Shift_Del p.N154Tfs*13 0.22 TCGA-F7-A624-01 3 46719881 46719881 T C ALS2CL Splice_Site p.X543_splice 0.31 TCGA-F7-A624-01 3 4681107 4681107 A C ITPR1 Missense_Mutation p.N107H 0.33 tolerated(0.05) probably_damaging(1) TCGA-F7-A624-01 3 46963484 46963484 C T CCDC12 3'UTR 0.26 TCGA-F7-A624-01 3 47043455 47043455 G A NBEAL2 Missense_Mutation p.A1610T 0.27 tolerated(0.26) benign(0.002) TCGA-F7-A624-01 3 4715983 4715983 A C ITPR1 Silent p.R837R 0.36 TCGA-F7-A624-01 3 47456400 47456400 G A SCAP Missense_Mutation p.P1075S 0.24 tolerated(0.65) benign(0.034) TCGA-F7-A624-01 3 47704027 47704027 C T SMARCC1 Missense_Mutation p.R652H 0.28 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 3 47859533 47859533 G A DHX30 Missense_Mutation p.R17H 0.27 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-F7-A624-01 3 48310381 48310381 A T ZNF589 3'UTR 0.13 TCGA-F7-A624-01 3 48456740 48456740 A G PLXNB1 Missense_Mutation p.C1271R 0.19 tolerated(0.93) benign(0) TCGA-F7-A624-01 3 48508760 48508760 A G TREX1 Missense_Mutation p.T291A 0.23 tolerated_low_confidence(0.16) benign(0.011) TCGA-F7-A624-01 3 48557053 48557053 G A PFKFB4 3'UTR 0.42 TCGA-F7-A624-01 3 4856176 4856176 T C ITPR1 Missense_Mutation p.V2529A 0.29 deleterious(0) benign(0.034) TCGA-F7-A624-01 3 48612862 48612862 G A COL7A1 Silent p.S2030S 0.29 TCGA-F7-A624-01 3 48698495 48698495 G A CELSR3 Missense_Mutation p.R525C 0.25 deleterious(0) probably_damaging(0.967) TCGA-F7-A624-01 3 48717525 48717525 G A NCKIPSD Silent p.I410I 0.36 TCGA-F7-A624-01 3 48921521 48921521 T C SLC25A20 Missense_Mutation p.I79V 0.19 tolerated(0.07) benign(0.007) TCGA-F7-A624-01 3 49139697 49139697 A G QARS Missense_Mutation p.V191A 0.23 tolerated(0.82) benign(0.002) TCGA-F7-A624-01 3 49311557 49311557 C G C3orf62 Missense_Mutation p.D155H 0.30 tolerated(0.09) possibly_damaging(0.59) TCGA-F7-A624-01 3 49314249 49314251 TCT - C3orf62 In_Frame_Del p.R19del 0.31 TCGA-F7-A624-01 3 49400019 49400019 G C RHOA Missense_Mutation p.F106L 0.16 deleterious(0.03) possibly_damaging(0.689) TCGA-F7-A624-01 3 49455120 49455120 A G AMT Silent p.S355S 0.22 TCGA-F7-A624-01 3 49569252 49569252 G A DAG1 Silent p.T436T 0.18 TCGA-F7-A624-01 3 49694495 49694495 G C BSN Missense_Mutation p.W2502C 0.27 unknown(0) TCGA-F7-A624-01 3 49719325 49719325 C - APEH Frame_Shift_Del p.H511Ifs*24 0.19 TCGA-F7-A624-01 3 49753038 49753038 A G RNF123 Missense_Mutation p.H1014R 0.30 tolerated(0.11) benign(0.002) TCGA-F7-A624-01 3 50005145 50005145 G - RBM6 Frame_Shift_Del p.G98Efs*56 0.26 TCGA-F7-A624-01 3 50095330 50095330 A G RBM6 Silent p.E621E 0.08 TCGA-F7-A624-01 3 50355698 50355698 C T HYAL2 Silent p.Q428Q 0.23 TCGA-F7-A624-01 3 50681875 50681875 C T MAPKAPK3 Silent p.D180D 0.23 TCGA-F7-A624-01 3 51394560 51394560 A G DOCK3 Silent p.A1557A 0.18 TCGA-F7-A624-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.23 TCGA-F7-A624-01 3 51430952 51430952 C T RBM15B Silent p.L708L 0.23 TCGA-F7-A624-01 3 51457835 51457835 A G VPRBP Silent p.L434L 0.29 TCGA-F7-A624-01 3 51708450 51708450 C T TEX264 Missense_Mutation p.R44C 0.19 deleterious(0.01) benign(0.08) TCGA-F7-A624-01 3 51743196 51743196 T - GRM2 Frame_Shift_Del p.F67Lfs*89 0.24 TCGA-F7-A624-01 3 52109924 52109924 G T POC1A Silent p.I401I 0.22 TCGA-F7-A624-01 3 52185030 52185030 A G POC1A Splice_Site p.X35_splice 0.25 TCGA-F7-A624-01 3 52255589 52255589 G A TLR9 Missense_Mutation p.P1069S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 3 52400777 52400777 C T DNAH1 Missense_Mutation p.T1880M 0.25 probably_damaging(0.998) TCGA-F7-A624-01 3 52417474 52417474 G A DNAH1 Missense_Mutation p.A2672T 0.24 benign(0.003) TCGA-F7-A624-01 3 52417479 52417479 C T DNAH1 Silent p.D2673D 0.28 TCGA-F7-A624-01 3 52422520 52422520 C T DNAH1 Silent p.D3086D 0.19 TCGA-F7-A624-01 3 52425582 52425582 A G DNAH1 Missense_Mutation p.T3339A 0.30 benign(0.085) TCGA-F7-A624-01 3 52547908 52547908 C - STAB1 Frame_Shift_Del p.R1122Efs*108 0.25 TCGA-F7-A624-01 3 52562241 52562241 G A NT5DC2 Silent p.H243H 0.28 TCGA-F7-A624-01 3 52637555 52637555 G A PBRM1 Nonsense_Mutation p.R921* 0.30 TCGA-F7-A624-01 3 52740853 52740853 G A SPCS1 Nonsense_Mutation p.W114* 0.21 TCGA-F7-A624-01 3 53213631 53213631 T C PRKCD Missense_Mutation p.Y52H 0.31 tolerated(0.28) probably_damaging(0.934) TCGA-F7-A624-01 3 53276160 53276160 T C TKT Missense_Mutation p.D69G 0.24 deleterious(0.01) probably_damaging(1) TCGA-F7-A624-01 3 53326391 53326391 C T DCP1A Missense_Mutation p.S364N 0.26 tolerated(1) benign(0.003) TCGA-F7-A624-01 3 53889347 53889347 A - IL17RB Frame_Shift_Del p.K172Sfs*23 0.28 TCGA-F7-A624-01 3 55504242 55504242 C T WNT5A Missense_Mutation p.G341S 0.19 deleterious(0) probably_damaging(0.987) TCGA-F7-A624-01 3 55513547 55513547 A T WNT5A Silent p.I62I 0.30 TCGA-F7-A624-01 3 56653450 56653450 T A CCDC66 Missense_Mutation p.S844T 0.27 tolerated(0.09) benign(0.021) TCGA-F7-A624-01 3 56771216 56771216 G A ARHGEF3 Silent p.G378G 0.23 TCGA-F7-A624-01 3 57850536 57850536 C T SLMAP Intron 0.29 TCGA-F7-A624-01 3 58090906 58090906 C A FLNB Missense_Mutation p.F570L 0.23 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 3 58419401 58419401 A G PDHB Missense_Mutation p.L18P 0.12 tolerated_low_confidence(0.08) benign(0.005) TCGA-F7-A624-01 3 62261570 62261570 A G PTPRG Missense_Mutation p.K1163R 0.10 tolerated(0.33) benign(0.016) TCGA-F7-A624-01 3 62307621 62307621 A G C3orf14 Missense_Mutation p.M24V 0.29 tolerated(1) benign(0.025) TCGA-F7-A624-01 3 63981379 63981379 A G ATXN7 Silent p.A627A 0.25 TCGA-F7-A624-01 3 63982054 63982054 A G ATXN7 Silent p.K852K 0.11 TCGA-F7-A624-01 3 64524953 64524953 C T ADAMTS9 Missense_Mutation p.A1847T 0.21 deleterious(0) possibly_damaging(0.812) TCGA-F7-A624-01 3 64633651 64633652 GT - ADAMTS9 Frame_Shift_Del p.P559Lfs*72 0.22 TCGA-F7-A624-01 3 65342171 65342171 G A MAGI1 Missense_Mutation p.A1424V 0.19 tolerated_low_confidence(0.54) unknown(0) TCGA-F7-A624-01 3 66463372 66463372 C A LRIG1 Missense_Mutation p.E238D 0.15 tolerated(0.09) benign(0.071) TCGA-F7-A624-01 3 67058494 67058494 T C KBTBD8 Silent p.F497F 0.13 TCGA-F7-A624-01 3 68593681 68593681 A G FAM19A1 3'UTR 0.20 TCGA-F7-A624-01 3 69097622 69097622 A G TMF1 Silent p.P78P 0.26 TCGA-F7-A624-01 3 69987103 69987103 A G MITF Missense_Mutation p.N162S 0.21 tolerated(0.96) benign(0.016) TCGA-F7-A624-01 3 73006420 73006420 T C GXYLT2 Missense_Mutation p.L298S 0.31 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 3 73433507 73433507 C A PDZRN3 Missense_Mutation p.R737I 0.26 tolerated(0.07) benign(0.212) TCGA-F7-A624-01 3 73450159 73450159 G A PDZRN3 Missense_Mutation p.H390Y 0.07 tolerated(0.46) benign(0.082) TCGA-F7-A624-01 3 75477005 75477005 T C FAM86DP RNA 0.44 TCGA-F7-A624-01 3 7620598 7620598 A T GRM7 Missense_Mutation p.S669C 0.24 tolerated(0.53) probably_damaging(0.999) TCGA-F7-A624-01 3 78710237 78710237 A G ROBO1 Missense_Mutation p.F755L 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-F7-A624-01 3 87302561 87302561 T A CHMP2B Missense_Mutation p.D144E 0.25 tolerated(0.1) benign(0.301) TCGA-F7-A624-01 3 89456441 89456441 T C EPHA3 Silent p.S539S 0.13 TCGA-F7-A624-01 3 8955357 8955357 G A RAD18 Missense_Mutation p.R313C 0.16 deleterious(0) possibly_damaging(0.696) TCGA-F7-A624-01 3 8990250 8990250 G A RAD18 Silent p.C46C 0.11 TCGA-F7-A624-01 3 93780281 93780281 C T DHFRL1 Silent p.R25R 0.07 TCGA-F7-A624-01 3 9703965 9703965 T C MTMR14 Missense_Mutation p.V108A 0.28 tolerated(0.19) probably_damaging(0.93) TCGA-F7-A624-01 3 97185296 97185296 C T EPHA6 Intron 0.16 TCGA-F7-A624-01 3 97705720 97705720 T C GABRR3 Missense_Mutation p.E404G 0.36 tolerated(0.05) benign(0.011) TCGA-F7-A624-01 3 97731363 97731363 G A GABRR3 Intron 0.37 TCGA-F7-A624-01 3 9782627 9782627 T C BRPF1 Splice_Site p.X574_splice 0.23 TCGA-F7-A624-01 3 97983477 97983477 T - OR5H6 Frame_Shift_Del p.S119Pfs*3 0.24 TCGA-F7-A624-01 3 98538090 98538090 T A DCBLD2 Missense_Mutation p.Y348F 0.29 tolerated(0.22) benign(0.21) TCGA-F7-A624-01 3 9972629 9972629 T C IL17RC Splice_Site p.X534_splice 0.27 TCGA-F7-A624-01 4 102981475 102981475 T A BANK1 Missense_Mutation p.S693T 0.23 tolerated(0.12) probably_damaging(0.991) TCGA-F7-A624-01 4 104041313 104041313 C T CENPE Missense_Mutation p.V2441I 0.35 benign(0.002) TCGA-F7-A624-01 4 106604001 106604001 G A INTS12 Silent p.S426S 0.20 TCGA-F7-A624-01 4 108935639 108935639 A G HADH Missense_Mutation p.D105G 0.23 deleterious(0) benign(0.129) TCGA-F7-A624-01 4 110460874 110460874 A G SEC24B 3'UTR 0.29 TCGA-F7-A624-01 4 110618836 110618836 G A CASP6 Missense_Mutation p.H58Y 0.19 tolerated(0.11) benign(0.003) TCGA-F7-A624-01 4 113348757 113348757 A T ALPK1 Missense_Mutation p.D244V 0.28 deleterious(0) probably_damaging(0.949) TCGA-F7-A624-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.39 TCGA-F7-A624-01 4 114294295 114294295 A G ANK2 Missense_Mutation p.Y3887C 0.28 probably_damaging(1) TCGA-F7-A624-01 4 119951959 119951959 C T SYNPO2 Missense_Mutation p.P677S 0.14 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 4 122068279 122068280 TC - TNIP3 Frame_Shift_Del p.R297Tfs*2 0.15 TCGA-F7-A624-01 4 123195575 123195575 A G KIAA1109 Missense_Mutation p.I2842V 0.18 benign(0.244) TCGA-F7-A624-01 4 123301398 123301398 T C ADAD1 Splice_Site p.X58_splice 0.29 TCGA-F7-A624-01 4 123314804 123314804 T C ADAD1 Missense_Mutation p.V197A 0.15 tolerated(0.61) benign(0.002) TCGA-F7-A624-01 4 128688369 128688369 A G SLC25A31 Silent p.T209T 0.07 TCGA-F7-A624-01 4 128724902 128724902 G A HSPA4L Missense_Mutation p.R261Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 4 13605598 13605598 T C BOD1L1 Missense_Mutation p.T976A 0.08 benign(0.001) TCGA-F7-A624-01 4 1379820 1379820 C T UVSSA 3'UTR 0.20 TCGA-F7-A624-01 4 140291445 140291445 A - NAA15 Frame_Shift_Del p.N614Mfs*22 0.50 TCGA-F7-A624-01 4 146031549 146031549 A C ABCE1 Missense_Mutation p.D189A 0.29 tolerated(0.2) benign(0.014) TCGA-F7-A624-01 4 146033465 146033465 T C ABCE1 Missense_Mutation p.L262P 0.35 deleterious(0) possibly_damaging(0.695) TCGA-F7-A624-01 4 146059009 146059010 TC - OTUD4 Frame_Shift_Del p.E908Nfs*5 0.23 TCGA-F7-A624-01 4 146807025 146807025 A G ZNF827 Missense_Mutation p.S518P 0.19 tolerated(0.73) benign(0.001) TCGA-F7-A624-01 4 15054114 15054114 A G CPEB2 Silent p.S759S 0.20 TCGA-F7-A624-01 4 151520221 151520221 A G LRBA Missense_Mutation p.F1995S 0.27 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 4 151770123 151770123 G C LRBA Missense_Mutation p.Q1396E 0.28 deleterious(0.03) benign(0.005) TCGA-F7-A624-01 4 153691769 153691769 T C TIGD4 Missense_Mutation p.N130D 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-F7-A624-01 4 153897502 153897502 C T FHDC1 Missense_Mutation p.P1020L 0.20 tolerated(0.12) benign(0.173) TCGA-F7-A624-01 4 15437503 15437503 C T C1QTNF7 Missense_Mutation p.P53S 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-F7-A624-01 4 155055 155055 A G ZNF718 RNA 0.23 TCGA-F7-A624-01 4 155219642 155219642 C T DCHS2 Missense_Mutation p.V1487M 0.25 deleterious(0) probably_damaging(0.984) TCGA-F7-A624-01 4 155253915 155253915 C G DCHS2 Missense_Mutation p.D650H 0.22 deleterious(0.03) benign(0.167) TCGA-F7-A624-01 4 155490896 155490896 A G FGB Missense_Mutation p.M397V 0.26 deleterious(0.01) probably_damaging(0.974) TCGA-F7-A624-01 4 155510012 155510012 A T FGA Missense_Mutation p.N99K 0.25 tolerated(0.1) possibly_damaging(0.632) TCGA-F7-A624-01 4 15569390 15569390 G A CC2D2A Missense_Mutation p.E1127K 0.16 deleterious(0.01) benign(0.135) TCGA-F7-A624-01 4 155720164 155720164 G A RBM46 Missense_Mutation p.A284T 0.18 deleterious(0) probably_damaging(0.913) TCGA-F7-A624-01 4 155776 155776 A G ZNF718 RNA 0.26 TCGA-F7-A624-01 4 15716967 15716967 A C BST1 Silent p.G198G 0.17 TCGA-F7-A624-01 4 164271697 164271697 T C NPY5R Missense_Mutation p.V91A 0.21 tolerated(0.26) possibly_damaging(0.873) TCGA-F7-A624-01 4 164394269 164394269 G A TKTL2 Silent p.C206C 0.25 TCGA-F7-A624-01 4 164436611 164436611 T C TMA16 Missense_Mutation p.L129P 0.06 deleterious(0) probably_damaging(0.964) TCGA-F7-A624-01 4 169173745 169173745 T C DDX60 Missense_Mutation p.H1207R 0.25 tolerated(0.24) benign(0.006) TCGA-F7-A624-01 4 169197209 169197209 T A DDX60 Missense_Mutation p.Y701F 0.24 tolerated(0.06) possibly_damaging(0.821) TCGA-F7-A624-01 4 169632741 169632741 A T PALLD Missense_Mutation p.E544V 0.23 deleterious(0.03) benign(0.159) TCGA-F7-A624-01 4 169845472 169845472 A G PALLD Missense_Mutation p.Y1042C 0.31 tolerated(0.1) probably_damaging(0.997) TCGA-F7-A624-01 4 170641235 170641235 T - CLCN3 3'UTR 0.29 TCGA-F7-A624-01 4 170671806 170671806 C T C4orf27 Silent p.T93T 0.21 TCGA-F7-A624-01 4 172735823 172735823 A G GALNTL6 Missense_Mutation p.Y31C 0.18 deleterious(0.03) probably_damaging(0.935) TCGA-F7-A624-01 4 173961102 173961102 C A GALNTL6 Missense_Mutation p.P553T 0.21 tolerated(0.17) possibly_damaging(0.637) TCGA-F7-A624-01 4 174235233 174235233 A T GALNT7 Missense_Mutation p.H505L 0.27 tolerated(0.31) benign(0.019) TCGA-F7-A624-01 4 176594959 176594959 C T GPM6A Missense_Mutation p.G87S 0.12 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 4 177046431 177046431 A T WDR17 Missense_Mutation p.N263Y 0.27 tolerated(0.7) benign(0.128) TCGA-F7-A624-01 4 17805713 17805713 C A DCAF16 Nonsense_Mutation p.E18* 0.15 TCGA-F7-A624-01 4 178897081 178897082 TT - LINC01098 Frame_Shift_Del p.S97* 0.21 TCGA-F7-A624-01 4 1818499 1818499 T C LETM1 Missense_Mutation p.D629G 0.25 tolerated(0.15) benign(0.005) TCGA-F7-A624-01 4 183675635 183675635 G A TENM3 Missense_Mutation p.R1372H 0.22 tolerated(1) benign(0.021) TCGA-F7-A624-01 4 184930607 184930607 G A STOX2 Missense_Mutation p.V206M 0.24 tolerated(0.48) benign(0.001) TCGA-F7-A624-01 4 185616375 185616375 T C CENPU 3'UTR 0.42 TCGA-F7-A624-01 4 185650087 185650087 T C CENPU Missense_Mutation p.T67A 0.14 tolerated(0.09) benign(0) TCGA-F7-A624-01 4 186111712 186111712 A G KIAA1430 Silent p.G213G 0.15 TCGA-F7-A624-01 4 186423556 186423556 T C PDLIM3 Silent p.Q329Q 0.26 TCGA-F7-A624-01 4 186545479 186545479 G A SORBS2 Silent p.N464N 0.19 TCGA-F7-A624-01 4 187542754 187542754 G A FAT1 Silent p.N1662N 0.15 TCGA-F7-A624-01 4 1961207 1961207 C T WHSC1 Missense_Mutation p.P999S 0.18 tolerated(0.06) probably_damaging(0.968) TCGA-F7-A624-01 4 20529936 20529936 A T SLIT2 Intron 0.35 TCGA-F7-A624-01 4 20618616 20618617 - T SLIT2 Frame_Shift_Ins p.Y1312Lfs*5 0.18 TCGA-F7-A624-01 4 20884321 20884321 C A KCNIP4 Missense_Mutation p.A25S 0.28 tolerated_low_confidence(0.79) benign(0.004) TCGA-F7-A624-01 4 22414896 22414896 C T GPR125 Missense_Mutation p.G714D 0.20 deleterious(0) probably_damaging(0.991) TCGA-F7-A624-01 4 24801537 24801537 T C SOD3 Missense_Mutation p.Y132H 0.12 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 4 2515440 2515440 A G RNF4 Missense_Mutation p.H156R 0.26 deleterious(0) probably_damaging(0.962) TCGA-F7-A624-01 4 25678331 25678331 T A SLC34A2 Missense_Mutation p.V678D 0.17 tolerated_low_confidence(0.32) benign(0.004) TCGA-F7-A624-01 4 2632724 2632724 T C FAM193A 5'UTR 0.30 TCGA-F7-A624-01 4 2695394 2695394 C - FAM193A Frame_Shift_Del p.L673Sfs*142 0.22 TCGA-F7-A624-01 4 2831230 2831230 G A SH3BP2 Missense_Mutation p.M256I 0.26 tolerated_low_confidence(0.75) benign(0) TCGA-F7-A624-01 4 2906672 2906672 T C ADD1 Missense_Mutation p.L448P 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-F7-A624-01 4 30921832 30921832 T C PCDH7 Missense_Mutation p.S1078P 0.08 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 4 3234934 3234934 G A HTT Silent p.T2770T 0.27 TCGA-F7-A624-01 4 3240680 3240680 T C HTT Missense_Mutation p.S3064P 0.21 possibly_damaging(0.821) TCGA-F7-A624-01 4 37841857 37841857 A G PGM2 Missense_Mutation p.D232G 0.26 tolerated(0.2) benign(0.102) TCGA-F7-A624-01 4 37851807 37851807 A G PGM2 Missense_Mutation p.Y472C 0.13 deleterious(0) probably_damaging(0.974) TCGA-F7-A624-01 4 38016236 38016236 T A TBC1D1 Missense_Mutation p.V175E 0.22 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 4 38990468 38990468 T C TMEM156 Intron 0.27 TCGA-F7-A624-01 4 39448945 39448946 - G KLB Frame_Shift_Ins p.V869Gfs*32 0.24 TCGA-F7-A624-01 4 3949808 3949808 C T FAM86EP RNA 0.18 TCGA-F7-A624-01 4 40339350 40339350 G A CHRNA9 Missense_Mutation p.V112M 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-F7-A624-01 4 41946932 41946932 T C TMEM33 Silent p.F173F 0.20 TCGA-F7-A624-01 4 41984194 41984194 T C DCAF4L1 Missense_Mutation p.S129P 0.25 tolerated(0.1) benign(0.213) TCGA-F7-A624-01 4 42554538 42554538 A T ATP8A1 Nonsense_Mutation p.Y501* 0.07 TCGA-F7-A624-01 4 43032386 43032386 G A GRXCR1 Silent p.Q234Q 0.16 TCGA-F7-A624-01 4 4304616 4304616 A G ZBTB49 Silent p.Q351Q 0.27 TCGA-F7-A624-01 4 4317368 4317368 C T ZBTB49 Missense_Mutation p.A461V 0.33 deleterious(0.01) possibly_damaging(0.529) TCGA-F7-A624-01 4 437625 437625 A G ZNF721 Missense_Mutation p.Y211H 0.27 tolerated(1) benign(0.04) TCGA-F7-A624-01 4 44177057 44177057 C T KCTD8 Missense_Mutation p.R391H 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-F7-A624-01 4 4422626 4422626 C T STX18 Missense_Mutation p.E293K 0.15 deleterious(0) possibly_damaging(0.881) TCGA-F7-A624-01 4 47765467 47765467 A G CORIN Silent p.S182S 0.28 TCGA-F7-A624-01 4 47765562 47765562 G A CORIN Missense_Mutation p.P151S 0.17 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 4 48517166 48517166 G A FRYL Missense_Mutation p.P2606S 0.25 tolerated_low_confidence(0.06) benign(0.001) TCGA-F7-A624-01 4 494216 494216 A G PIGG Silent p.P62P 0.19 TCGA-F7-A624-01 4 55561942 55561942 T C KIT Missense_Mutation p.V111A 0.29 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 4 5627482 5627482 T C EVC2 Silent p.L680L 0.30 TCGA-F7-A624-01 4 57237793 57237793 T C AASDH Missense_Mutation p.T229A 0.08 deleterious(0.01) benign(0.314) TCGA-F7-A624-01 4 6611559 6611559 C T MAN2B2 Missense_Mutation p.R681C 0.22 deleterious(0.01) benign(0.308) TCGA-F7-A624-01 4 6612992 6612992 C T MAN2B2 Silent p.F850F 0.17 TCGA-F7-A624-01 4 680338 680338 C T MFSD7 Missense_Mutation p.V93I 0.26 tolerated(0.15) benign(0.01) TCGA-F7-A624-01 4 68355753 68355753 A - CENPC Frame_Shift_Del p.S868Lfs*5 0.17 TCGA-F7-A624-01 4 68928237 68928237 T C TMPRSS11F Intron 0.09 TCGA-F7-A624-01 4 69107494 69107494 G A TMPRSS11B Missense_Mutation p.P13S 0.14 deleterious(0.02) benign(0.102) TCGA-F7-A624-01 4 7011633 7011633 T C TBC1D14 Silent p.S492S 0.21 TCGA-F7-A624-01 4 70721142 70721142 T C SULT1E1 Missense_Mutation p.T50A 0.09 deleterious(0) possibly_damaging(0.695) TCGA-F7-A624-01 4 71275344 71275344 C T PROL1 Missense_Mutation p.P100L 0.25 tolerated_low_confidence(0.23) benign(0) TCGA-F7-A624-01 4 71588197 71588198 - T RUFY3 5'UTR 0.28 TCGA-F7-A624-01 4 72994604 72994604 T C NPFFR2 Missense_Mutation p.M201T 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-F7-A624-01 4 76891490 76891490 T C SDAD1 Silent p.S285S 0.19 TCGA-F7-A624-01 4 7780604 7780604 C A AFAP1 Splice_Site p.X595_splice 0.08 TCGA-F7-A624-01 4 79360054 79360054 A G FRAS1 Splice_Site p.X1789_splice 0.17 TCGA-F7-A624-01 4 83279810 83279810 A G HNRNPD Splice_Site p.X207_splice 0.23 TCGA-F7-A624-01 4 83381368 83381369 AT - ENOPH1 3'UTR 0.15 TCGA-F7-A624-01 4 83719663 83719664 - C SCD5 Frame_Shift_Ins p.K10Efs*19 0.21 TCGA-F7-A624-01 4 83839815 83839815 T C THAP9 Missense_Mutation p.V817A 0.30 deleterious(0) benign(0.001) TCGA-F7-A624-01 4 83978433 83978433 A T COPS4 Missense_Mutation p.D196V 0.07 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 4 84026117 84026117 T C PLAC8 Missense_Mutation p.N59D 0.36 tolerated(0.62) benign(0.074) TCGA-F7-A624-01 4 84223312 84223312 T C HPSE Missense_Mutation p.N439S 0.24 tolerated(0.33) possibly_damaging(0.541) TCGA-F7-A624-01 4 84390289 84390289 T C FAM175A Silent p.V164V 0.24 TCGA-F7-A624-01 4 85530594 85530594 G A CDS1 Nonsense_Mutation p.W86* 0.24 TCGA-F7-A624-01 4 85617976 85617976 C T WDFY3 Missense_Mutation p.G2866D 0.19 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 4 87679894 87679894 T C PTPN13 Missense_Mutation p.V1126A 0.24 deleterious(0) benign(0.095) TCGA-F7-A624-01 4 88226367 88226367 T C HSD17B13 3'UTR 0.36 TCGA-F7-A624-01 4 89589132 89589132 T C HERC3 Silent p.P511P 0.25 TCGA-F7-A624-01 4 90857093 90857093 T C MMRN1 Silent p.T754T 0.21 TCGA-F7-A624-01 4 99809056 99809056 T C EIF4E Missense_Mutation p.D90G 0.30 deleterious(0) benign(0.149) TCGA-F7-A624-01 5 102522033 102522033 C T PPIP5K2 Missense_Mutation p.A1061V 0.35 tolerated_low_confidence(0.07) benign(0.294) TCGA-F7-A624-01 5 10258521 10258521 A G CCT5 Silent p.A249A 0.30 TCGA-F7-A624-01 5 1064202 1064202 T C SLC12A7 Missense_Mutation p.H868R 0.14 deleterious(0) possibly_damaging(0.695) TCGA-F7-A624-01 5 108523240 108523240 G C FER Missense_Mutation p.Q811H 0.21 tolerated(1) benign(0.004) TCGA-F7-A624-01 5 112103073 112103073 A G APC Silent p.E136E 0.12 TCGA-F7-A624-01 5 112174922 112174922 A G APC Missense_Mutation p.M1211V 0.15 benign(0) TCGA-F7-A624-01 5 112177340 112177340 A G APC Missense_Mutation p.T2017A 0.27 probably_damaging(0.999) TCGA-F7-A624-01 5 112214365 112214365 T A REEP5 3'UTR 0.19 TCGA-F7-A624-01 5 112770140 112770140 C T TSSK1B Missense_Mutation p.V133I 0.18 deleterious(0.04) possibly_damaging(0.545) TCGA-F7-A624-01 5 115335468 115335468 T - AQPEP Frame_Shift_Del p.S464Lfs*15 0.18 TCGA-F7-A624-01 5 121759250 121759250 A G SNCAIP Missense_Mutation p.K273R 0.27 tolerated(0.17) benign(0.007) TCGA-F7-A624-01 5 122131076 122131076 C T SNX2 Missense_Mutation p.A75V 0.24 tolerated(0.13) possibly_damaging(0.762) TCGA-F7-A624-01 5 123984603 123984603 C T ZNF608 Missense_Mutation p.A492T 0.23 deleterious(0) benign(0.047) TCGA-F7-A624-01 5 127599186 127599186 T C FBN2 Missense_Mutation p.Y2708C 0.25 deleterious(0) benign(0.006) TCGA-F7-A624-01 5 127647003 127647003 C T FBN2 Missense_Mutation p.R1688H 0.15 tolerated(0.05) probably_damaging(0.996) TCGA-F7-A624-01 5 127681179 127681179 G A FBN2 Silent p.V1029V 0.25 TCGA-F7-A624-01 5 128440948 128440948 C T ISOC1 Missense_Mutation p.T167M 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 5 128862006 128862006 G A ADAMTS19 Missense_Mutation p.A309T 0.22 tolerated(0.7) benign(0) TCGA-F7-A624-01 5 131007907 131007907 A T FNIP1 Missense_Mutation p.C744S 0.24 tolerated(0.41) benign(0.374) TCGA-F7-A624-01 5 131931411 131931411 C T RAD50 Nonsense_Mutation p.R706* 0.20 TCGA-F7-A624-01 5 131940675 131940675 T C RAD50 Missense_Mutation p.L901S 0.36 deleterious(0) probably_damaging(0.93) TCGA-F7-A624-01 5 1330449 1330449 G A CLPTM1L Silent p.D342D 0.26 TCGA-F7-A624-01 5 133494134 133494134 T C SKP1 Intron 0.09 TCGA-F7-A624-01 5 133997209 133997209 T C SEC24A Silent p.S166S 0.25 TCGA-F7-A624-01 5 134002615 134002615 C T SEC24A Missense_Mutation p.A223V 0.13 tolerated(0.21) benign(0.002) TCGA-F7-A624-01 5 134131842 134131842 T C DDX46 Splice_Site p.X652_splice 0.08 TCGA-F7-A624-01 5 134210145 134210145 C - TXNDC15 Frame_Shift_Del p.R11Afs*82 0.28 TCGA-F7-A624-01 5 134705782 134705782 G A H2AFY Missense_Mutation p.R75W 0.23 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 5 134785067 134785067 T C TIFAB 3'UTR 0.23 TCGA-F7-A624-01 5 135188294 135188294 A G SLC25A48 Missense_Mutation p.I69V 0.07 tolerated(0.28) benign(0.044) TCGA-F7-A624-01 5 135290597 135290597 G C LECT2 5'UTR 0.30 TCGA-F7-A624-01 5 136324330 136324330 A G SPOCK1 Missense_Mutation p.F237L 0.27 tolerated(0.46) probably_damaging(0.996) TCGA-F7-A624-01 5 137241900 137241900 T C PKD2L2 Missense_Mutation p.V251A 0.30 deleterious(0) benign(0.067) TCGA-F7-A624-01 5 137666820 137666820 G T CDC25C Nonsense_Mutation p.S17* 0.35 TCGA-F7-A624-01 5 137848560 137848560 C T ETF1 Missense_Mutation p.A209T 0.27 deleterious(0.03) possibly_damaging(0.592) TCGA-F7-A624-01 5 137902705 137902705 C A HSPA9 Missense_Mutation p.K288N 0.22 tolerated_low_confidence(0.22) benign(0.022) TCGA-F7-A624-01 5 138260997 138260997 G A CTNNA1 Silent p.S600S 0.35 TCGA-F7-A624-01 5 139752342 139752342 T C SLC4A9 Missense_Mutation p.Y971H 0.55 tolerated(0.09) benign(0.046) TCGA-F7-A624-01 5 139918959 139918959 T C ANKHD1 Intron 0.26 TCGA-F7-A624-01 5 139938224 139938224 G C APBB3 Silent p.V476V 0.29 TCGA-F7-A624-01 5 140027470 140027470 T C IK 5'UTR 0.21 TCGA-F7-A624-01 5 140044496 140044496 G A WDR55 5'UTR 0.16 TCGA-F7-A624-01 5 140054660 140054660 T C HARS Missense_Mutation p.K418R 0.25 deleterious(0.04) possibly_damaging(0.766) TCGA-F7-A624-01 5 140166205 140166205 C T PCDHA1 Silent p.A110A 0.23 TCGA-F7-A624-01 5 140166235 140166235 G C PCDHA1 Missense_Mutation p.E120D 0.21 tolerated_low_confidence(0.07) benign(0.019) TCGA-F7-A624-01 5 140167344 140167344 T C PCDHA1 Missense_Mutation p.V490A 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-F7-A624-01 5 140176132 140176132 T C PCDHA2 Missense_Mutation p.V528A 0.29 deleterious_low_confidence(0.02) benign(0.023) TCGA-F7-A624-01 5 140182072 140182072 G A PCDHA3 Silent p.G430G 0.24 TCGA-F7-A624-01 5 140202875 140202875 T C PCDHA5 Silent p.S505S 0.22 TCGA-F7-A624-01 5 140208740 140208740 T C PCDHA6 Missense_Mutation p.L355S 0.23 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-F7-A624-01 5 140214061 140214061 C T PCDHA7 Silent p.L31L 0.24 TCGA-F7-A624-01 5 140221772 140221772 T C PCDHA8 Missense_Mutation p.V289A 0.24 tolerated_low_confidence(0.08) benign(0.024) TCGA-F7-A624-01 5 140229613 140229613 C T PCDHA9 Silent p.H511H 0.23 TCGA-F7-A624-01 5 140236622 140236622 T C PCDHA10 Missense_Mutation p.V330A 0.17 tolerated_low_confidence(1) benign(0.009) TCGA-F7-A624-01 5 140236912 140236912 C T PCDHA10 Missense_Mutation p.R427W 0.26 deleterious_low_confidence(0.04) probably_damaging(0.967) TCGA-F7-A624-01 5 140237074 140237074 G A PCDHA10 Missense_Mutation p.A481T 0.19 deleterious_low_confidence(0.02) benign(0.292) TCGA-F7-A624-01 5 140242334 140242334 G A AC005609.1 3'UTR 0.24 TCGA-F7-A624-01 5 140250599 140250599 C T PCDHA11 Silent p.D637D 0.23 TCGA-F7-A624-01 5 140256700 140256700 A G PCDHA12 Missense_Mutation p.N548S 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.642) TCGA-F7-A624-01 5 140308431 140308431 C T PCDHAC1 Silent p.L652L 0.27 TCGA-F7-A624-01 5 140346540 140346540 C T PCDHAC2 Silent p.R63R 0.30 TCGA-F7-A624-01 5 140481581 140481581 G A PCDHB3 Missense_Mutation p.A450T 0.28 tolerated_low_confidence(0.38) benign(0.001) TCGA-F7-A624-01 5 140502502 140502502 T C PCDHB4 Missense_Mutation p.F308L 0.07 deleterious(0) probably_damaging(0.986) TCGA-F7-A624-01 5 140531261 140531261 G A PCDHB6 Missense_Mutation p.D475N 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-F7-A624-01 5 140537524 140537524 G A PCDHB17 3'UTR 0.15 TCGA-F7-A624-01 5 140537552 140537552 G A PCDHB17 3'UTR 0.04 TCGA-F7-A624-01 5 140559068 140559068 G A PCDHB8 Missense_Mutation p.A485T 0.04 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-F7-A624-01 5 140573530 140573530 C T PCDHB10 Missense_Mutation p.H469Y 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.599) TCGA-F7-A624-01 5 140573811 140573811 G A PCDHB10 Silent p.L562L 0.13 TCGA-F7-A624-01 5 140580930 140580930 A G PCDHB11 Missense_Mutation p.D528G 0.09 deleterious_low_confidence(0) benign(0.003) TCGA-F7-A624-01 5 140580935 140580935 C T PCDHB11 Missense_Mutation p.R530C 0.26 deleterious_low_confidence(0.02) benign(0.052) TCGA-F7-A624-01 5 140589601 140589601 C A PCDHB12 Missense_Mutation p.D374E 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F7-A624-01 5 140603627 140603627 G A PCDHB14 Missense_Mutation p.D184N 0.22 tolerated_low_confidence(1) possibly_damaging(0.87) TCGA-F7-A624-01 5 140604639 140604639 A G PCDHB14 Missense_Mutation p.Y521C 0.25 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-F7-A624-01 5 140605320 140605320 G C PCDHB14 Missense_Mutation p.S748T 0.20 deleterious_low_confidence(0.02) benign(0.024) TCGA-F7-A624-01 5 140698689 140698689 T A TAF7 Missense_Mutation p.K308I 0.09 deleterious(0) possibly_damaging(0.877) TCGA-F7-A624-01 5 140712134 140712134 C T PCDHGA1 Missense_Mutation p.T628M 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F7-A624-01 5 140724107 140724107 C A PCDHGA3 Missense_Mutation p.N169K 0.21 tolerated_low_confidence(0.18) benign(0.006) TCGA-F7-A624-01 5 140735666 140735666 A G PCDHGA4 Missense_Mutation p.D300G 0.24 deleterious_low_confidence(0) possibly_damaging(0.845) TCGA-F7-A624-01 5 140741836 140741839 TCCC CCCCA PCDHGB2 Frame_Shift_Ins p.S712Pfs*34 0.17 TCGA-F7-A624-01 5 140754749 140754749 G A PCDHGA6 Missense_Mutation p.A367T 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-F7-A624-01 5 140769676 140769676 G A PCDHGB4 Missense_Mutation p.S742N 0.26 tolerated(0.31) benign(0.005) TCGA-F7-A624-01 5 140773130 140773130 A G PCDHGA8 Silent p.K250K 0.29 TCGA-F7-A624-01 5 140799272 140799272 C A PCDHGB7 Missense_Mutation p.L616I 0.26 deleterious(0) probably_damaging(0.965) TCGA-F7-A624-01 5 140807327 140807327 T A PCDHGB6 Intron 0.28 TCGA-F7-A624-01 5 140811955 140811955 C T PCDHGA12 Silent p.S543S 0.25 TCGA-F7-A624-01 5 140812493 140812493 C T PCDHGA12 Missense_Mutation p.R723C 0.27 deleterious_low_confidence(0.01) benign(0.046) TCGA-F7-A624-01 5 140885038 140885038 G A PCDHGB6 Silent p.A852A 0.21 TCGA-F7-A624-01 5 1409833 1409833 T C SLC6A3 Intron 0.24 TCGA-F7-A624-01 5 141009296 141009296 A G HDAC3 Missense_Mutation p.F144S 0.05 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 5 141016368 141016368 G T HDAC3 5'UTR 0.28 TCGA-F7-A624-01 5 141019259 141019259 C A FCHSD1 3'UTR 0.38 TCGA-F7-A624-01 5 141335448 141335448 A T PCDH12 Missense_Mutation p.F657I 0.21 deleterious(0.02) possibly_damaging(0.529) TCGA-F7-A624-01 5 14290832 14290832 T C TRIO Missense_Mutation p.M183T 0.11 probably_damaging(0.929) TCGA-F7-A624-01 5 14369559 14369559 G A TRIO Missense_Mutation p.G1048D 0.22 probably_damaging(0.972) TCGA-F7-A624-01 5 14487613 14487613 G C TRIO Silent p.G2292G 0.26 TCGA-F7-A624-01 5 14488150 14488150 G A TRIO Silent p.E2471E 0.37 TCGA-F7-A624-01 5 14508455 14508455 G A TRIO Missense_Mutation p.R3073H 0.23 unknown(0) TCGA-F7-A624-01 5 145464016 145464016 C T PLAC8L1 Missense_Mutation p.M171I 0.10 tolerated(0.06) benign(0) TCGA-F7-A624-01 5 145838680 145838680 A G TCERG1 Silent p.Q224Q 0.29 TCGA-F7-A624-01 5 145838686 145838686 G A TCERG1 Silent p.Q226Q 0.28 TCGA-F7-A624-01 5 146798109 146798109 C T DPYSL3 Missense_Mutation p.V186I 0.25 tolerated(0.19) benign(0.003) TCGA-F7-A624-01 5 147261109 147261109 T C SCGB3A2 Silent p.L52L 0.25 TCGA-F7-A624-01 5 147781675 147781675 C T FBXO38 Silent p.V131V 0.07 TCGA-F7-A624-01 5 149265933 149265933 C A PDE6A Missense_Mutation p.G578V 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 5 149677774 149677774 A G ARSI Missense_Mutation p.V238A 0.21 tolerated(0.06) benign(0.361) TCGA-F7-A624-01 5 149769567 149769567 A G TCOF1 Missense_Mutation p.Q1055R 0.28 tolerated(0.05) possibly_damaging(0.567) TCGA-F7-A624-01 5 150646297 150646297 T C GM2A Silent p.D83D 0.31 TCGA-F7-A624-01 5 150923823 150923823 T C FAT2 Missense_Mutation p.T2289A 0.07 probably_damaging(0.967) TCGA-F7-A624-01 5 151179896 151179896 A T G3BP1 Missense_Mutation p.D358V 0.26 tolerated(0.14) benign(0.346) TCGA-F7-A624-01 5 151784435 151784435 G A NMUR2 Silent p.T80T 0.27 TCGA-F7-A624-01 5 153078486 153078486 C T GRIA1 Silent p.Y445Y 0.18 TCGA-F7-A624-01 5 153085393 153085393 C T GRIA1 Missense_Mutation p.S540F 0.25 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 5 153677561 153677561 A G GALNT10 Missense_Mutation p.Y108C 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 5 153795360 153795360 G C GALNT10 Missense_Mutation p.W507C 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 5 153832994 153832994 A G SAP30L Silent p.L119L 0.20 TCGA-F7-A624-01 5 154181602 154181602 T C LARP1 Silent p.S507S 0.21 TCGA-F7-A624-01 5 154250343 154250343 T C CNOT8 Missense_Mutation p.V145A 0.29 deleterious(0.03) benign(0.345) TCGA-F7-A624-01 5 156957825 156957825 G A ADAM19 Nonsense_Mutation p.R133* 0.32 TCGA-F7-A624-01 5 158139231 158139231 C T EBF1 Missense_Mutation p.A494T 0.15 tolerated_low_confidence(0.22) benign(0.002) TCGA-F7-A624-01 5 158603773 158603773 A G RNF145 Missense_Mutation p.V193A 0.29 tolerated(0.11) benign(0.1) TCGA-F7-A624-01 5 158712012 158712012 T C UBLCP1 3'UTR 0.19 TCGA-F7-A624-01 5 15936691 15936691 A G FBXL7 Missense_Mutation p.H291R 0.27 tolerated(0.74) benign(0) TCGA-F7-A624-01 5 160044886 160044886 T C ATP10B Silent p.L837L 0.25 TCGA-F7-A624-01 5 161324371 161324371 C T GABRA1 Silent p.Y438Y 0.24 TCGA-F7-A624-01 5 16465396 16465396 C T ZNF622 Missense_Mutation p.A127T 0.23 tolerated(0.18) benign(0.021) TCGA-F7-A624-01 5 167379617 167379617 C T TENM2 Missense_Mutation p.S246L 0.13 tolerated_low_confidence(0.07) benign(0.278) TCGA-F7-A624-01 5 167671662 167671662 C T TENM2 Missense_Mutation p.R1920C 0.20 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 5 167674247 167674247 A G TENM2 Silent p.A2101A 0.08 TCGA-F7-A624-01 5 167986153 167986156 TGTT - PANK3 Frame_Shift_Del p.N315Efs*16 0.24 TCGA-F7-A624-01 5 168093656 168093656 G A SLIT3 Missense_Mutation p.R1459C 0.24 deleterious(0.01) possibly_damaging(0.677) TCGA-F7-A624-01 5 168180952 168180952 G A SLIT3 Silent p.S582S 0.24 TCGA-F7-A624-01 5 168244337 168244337 G A SLIT3 Missense_Mutation p.A254V 0.22 deleterious(0.05) possibly_damaging(0.627) TCGA-F7-A624-01 5 169116296 169116296 A - DOCK2 Frame_Shift_Del p.K268Rfs*9 0.16 TCGA-F7-A624-01 5 172659915 172659915 G T NKX2-5 Missense_Mutation p.P211Q 0.31 tolerated(0.43) probably_damaging(0.993) TCGA-F7-A624-01 5 174940534 174940534 C T SFXN1 Missense_Mutation p.A222V 0.16 deleterious(0) possibly_damaging(0.88) TCGA-F7-A624-01 5 175110376 175110376 G A HRH2 Missense_Mutation p.R47H 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-F7-A624-01 5 175110408 175110408 G A HRH2 Missense_Mutation p.V58M 0.28 deleterious(0.03) possibly_damaging(0.73) TCGA-F7-A624-01 5 175511920 175511920 T C FAM153B Intron 0.31 TCGA-F7-A624-01 5 175717628 175717628 A G SIMC1 Intron 0.07 TCGA-F7-A624-01 5 176523731 176523731 C - FGFR4 Frame_Shift_Del p.P716Qfs*6 0.11 TCGA-F7-A624-01 5 176895114 176895114 T C DBN1 Missense_Mutation p.N86D 0.23 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 5 176916445 176916445 C - PDLIM7 Frame_Shift_Del p.G273Afs*84 0.33 TCGA-F7-A624-01 5 177658445 177658445 C A PHYKPL Missense_Mutation p.G47W 0.17 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 5 177665659 177665659 G A COL23A1 3'UTR 0.06 TCGA-F7-A624-01 5 177694329 177694329 T C COL23A1 Silent p.A167A 0.22 TCGA-F7-A624-01 5 178310089 178310089 A G ZNF354B Silent p.K212K 0.21 TCGA-F7-A624-01 5 178310261 178310261 T C ZNF354B Missense_Mutation p.Y270H 0.26 deleterious(0.01) possibly_damaging(0.802) TCGA-F7-A624-01 5 178369722 178369722 A G ZNF454 5'UTR 0.33 TCGA-F7-A624-01 5 178454545 178454545 G A ZNF879 Silent p.Q35Q 0.39 TCGA-F7-A624-01 5 179132782 179132782 G A CANX Missense_Mutation p.D34N 0.24 tolerated(0.13) probably_damaging(0.993) TCGA-F7-A624-01 5 179306696 179306696 T C TBC1D9B Missense_Mutation p.T450A 0.23 tolerated(0.08) benign(0.289) TCGA-F7-A624-01 5 179565058 179565058 C T RASGEF1C 5'UTR 0.22 TCGA-F7-A624-01 5 180053023 180053023 G - FLT4 Frame_Shift_Del p.Q423Rfs*70 0.29 TCGA-F7-A624-01 5 180166537 180166537 A G OR2Y1 Silent p.N174N 0.19 TCGA-F7-A624-01 5 180219557 180219557 C T MGAT1 Missense_Mutation p.V139I 0.17 possibly_damaging(0.684) TCGA-F7-A624-01 5 180219668 180219668 C T MGAT1 Missense_Mutation p.A102T 0.17 benign(0.006) TCGA-F7-A624-01 5 19571743 19571743 T C CDH18 Missense_Mutation p.T400A 0.16 tolerated(0.1) benign(0.042) TCGA-F7-A624-01 5 21751992 21751992 C T CDH12 Missense_Mutation p.V747M 0.11 deleterious(0.03) possibly_damaging(0.835) TCGA-F7-A624-01 5 24537624 24537624 C T CDH10 Missense_Mutation p.A131T 0.31 deleterious(0) probably_damaging(0.985) TCGA-F7-A624-01 5 2749646 2749646 G A IRX2 Missense_Mutation p.R169C 0.21 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 5 2749790 2749790 C T IRX2 Missense_Mutation p.A121T 0.27 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 5 31297440 31297440 A G CDH6 Missense_Mutation p.T190A 0.24 deleterious(0.03) probably_damaging(0.943) TCGA-F7-A624-01 5 31323233 31323233 C T CDH6 Missense_Mutation p.P731S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 5 31493365 31493365 G A DROSHA Silent p.H597H 0.19 TCGA-F7-A624-01 5 32724858 32724858 A G NPR3 Missense_Mutation p.H275R 0.29 deleterious(0) possibly_damaging(0.693) TCGA-F7-A624-01 5 32774849 32774849 C T NPR3 Silent p.I365I 0.27 TCGA-F7-A624-01 5 33944930 33944930 C A SLC45A2 Missense_Mutation p.K472N 0.21 tolerated(0.29) benign(0.371) TCGA-F7-A624-01 5 34020617 34020617 T C C1QTNF3 3'UTR 0.24 TCGA-F7-A624-01 5 35035325 35035325 A G AGXT2 Splice_Site p.X194_splice 0.18 TCGA-F7-A624-01 5 35954387 35954387 G A UGT3A1 Silent p.L497L 0.17 TCGA-F7-A624-01 5 3601144 3601144 C T IRX1 Missense_Mutation p.P478L 0.23 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-F7-A624-01 5 36195184 36195184 T C NADK2 3'UTR 0.21 TCGA-F7-A624-01 5 36975950 36975950 T A NIPBL Missense_Mutation p.I314N 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.462) TCGA-F7-A624-01 5 36986173 36986173 A T NIPBL Missense_Mutation p.D964V 0.20 deleterious_low_confidence(0) benign(0.135) TCGA-F7-A624-01 5 37725149 37725149 C A WDR70 Missense_Mutation p.P571T 0.21 tolerated(0.05) benign(0.265) TCGA-F7-A624-01 5 38904532 38904532 A G OSMR Silent p.V404V 0.24 TCGA-F7-A624-01 5 39331791 39331791 G A C9 Missense_Mutation p.S201F 0.30 tolerated(0.77) benign(0.008) TCGA-F7-A624-01 5 40681477 40681477 A G PTGER4 Missense_Mutation p.S128G 0.10 tolerated(0.08) benign(0.005) TCGA-F7-A624-01 5 40765238 40765238 A G PRKAA1 Silent p.C323C 0.10 TCGA-F7-A624-01 5 41018457 41018457 T C MROH2B Missense_Mutation p.T917A 0.27 tolerated(0.84) benign(0.005) TCGA-F7-A624-01 5 41058281 41058281 C T MROH2B Missense_Mutation p.G214R 0.32 tolerated(0.11) probably_damaging(0.977) TCGA-F7-A624-01 5 41313724 41313724 T G PLCXD3 Missense_Mutation p.T321P 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.829) TCGA-F7-A624-01 5 42719611 42719611 A G GHR 3'UTR 0.26 TCGA-F7-A624-01 5 427785 427785 T C AHRR Missense_Mutation p.C252R 0.24 tolerated_low_confidence(0.41) benign(0.009) TCGA-F7-A624-01 5 43039613 43039613 A G ANXA2R Missense_Mutation p.V179A 0.16 tolerated(0.07) benign(0.023) TCGA-F7-A624-01 5 43291106 43291106 G A HMGCS1 3'UTR 0.25 TCGA-F7-A624-01 5 43487070 43487070 T - C5orf34 Frame_Shift_Del p.T622Pfs*87 0.17 TCGA-F7-A624-01 5 43650623 43650623 T C NNT Missense_Mutation p.Y551H 0.09 tolerated(0.06) benign(0.007) TCGA-F7-A624-01 5 45462020 45462020 A G HCN1 Silent p.G313G 0.29 TCGA-F7-A624-01 5 466859 466859 C T EXOC3 Missense_Mutation p.A695V 0.31 tolerated(0.13) probably_damaging(0.984) TCGA-F7-A624-01 5 54329825 54329825 A G GZMK 3'UTR 0.33 TCGA-F7-A624-01 5 54603692 54603692 A G SKIV2L2 5'UTR 0.40 TCGA-F7-A624-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.23 TCGA-F7-A624-01 5 56180610 56180610 G A MAP3K1 Silent p.T1313T 0.13 TCGA-F7-A624-01 5 59064256 59064256 T C PDE4D Intron 0.28 TCGA-F7-A624-01 5 59895032 59895032 C T DEPDC1B Missense_Mutation p.R433H 0.17 tolerated(0.42) benign(0.002) TCGA-F7-A624-01 5 61923013 61923013 A G IPO11 Silent p.S972S 0.12 TCGA-F7-A624-01 5 65105442 65105442 G A NLN Missense_Mutation p.R543Q 0.20 tolerated(0.59) benign(0.01) TCGA-F7-A624-01 5 65309448 65309448 T C ERBB2IP Missense_Mutation p.L153S 0.16 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 5 65349638 65349638 A G ERBB2IP Missense_Mutation p.Q831R 0.25 tolerated_low_confidence(0.33) benign(0.001) TCGA-F7-A624-01 5 66255090 66255090 G T MAST4 Intron 0.20 TCGA-F7-A624-01 5 66459127 66459127 A G MAST4 Missense_Mutation p.I1374V 0.26 probably_damaging(0.91) TCGA-F7-A624-01 5 68660866 68660866 T C TAF9 Silent p.S233S 0.21 TCGA-F7-A624-01 5 68662584 68662584 T C TAF9 Intron 0.50 TCGA-F7-A624-01 5 68710231 68710231 T C RAD17 3'UTR 0.18 TCGA-F7-A624-01 5 68737375 68737375 A - MARVELD2 Frame_Shift_Del p.E527Nfs*6 0.19 TCGA-F7-A624-01 5 70858308 70858308 T C BDP1 Silent p.I2568I 0.29 TCGA-F7-A624-01 5 70927998 70927998 T C MCCC2 Silent p.A263A 0.24 TCGA-F7-A624-01 5 71501216 71501216 A G MAP1B 3'UTR 0.50 TCGA-F7-A624-01 5 72192975 72192975 A G TNPO1 Missense_Mutation p.T779A 0.11 tolerated(0.75) benign(0.003) TCGA-F7-A624-01 5 72863173 72863173 G A UTP15 Missense_Mutation p.A2T 0.24 tolerated(0.08) benign(0.415) TCGA-F7-A624-01 5 72868354 72868354 A T UTP15 Silent p.G238G 0.24 TCGA-F7-A624-01 5 76028487 76028487 C T F2R Missense_Mutation p.T146M 0.21 tolerated(0.15) benign(0.028) TCGA-F7-A624-01 5 77805875 77805875 C T LHFPL2 Silent p.P54P 0.24 TCGA-F7-A624-01 5 7869267 7869267 C T MTRR Silent p.R7R 0.17 TCGA-F7-A624-01 5 79033127 79033127 A G CMYA5 Missense_Mutation p.T2847A 0.31 benign(0.02) TCGA-F7-A624-01 5 79054654 79054654 A G CMYA5 Missense_Mutation p.N3730S 0.25 benign(0.206) TCGA-F7-A624-01 5 79741121 79741121 A G ZFYVE16 Missense_Mutation p.D874G 0.20 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 5 80369244 80369244 A G RASGRF2 Missense_Mutation p.D287G 0.12 deleterious(0) possibly_damaging(0.692) TCGA-F7-A624-01 5 80382759 80382759 G A RASGRF2 Silent p.T459T 0.26 TCGA-F7-A624-01 5 80419549 80419549 C A RASGRF2 Silent p.P853P 0.20 TCGA-F7-A624-01 5 81571973 81571973 A G RPS23 Silent p.S129S 0.24 TCGA-F7-A624-01 5 82937358 82937358 T - HAPLN1 Frame_Shift_Del p.K341Sfs*24 0.19 TCGA-F7-A624-01 5 88100458 88100458 T C MEF2C Missense_Mutation p.Y72C 0.23 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 5 89979645 89979645 T C GPR98 Silent p.V1969V 0.39 TCGA-F7-A624-01 5 89981749 89981749 A G GPR98 Missense_Mutation p.T2143A 0.23 benign(0.194) TCGA-F7-A624-01 5 89990217 89990217 G A GPR98 Missense_Mutation p.M2548I 0.26 benign(0.38) TCGA-F7-A624-01 5 90020655 90020655 T C GPR98 Missense_Mutation p.M3252T 0.26 benign(0.001) TCGA-F7-A624-01 5 9044645 9044645 C T SEMA5A Missense_Mutation p.G982D 0.27 deleterious(0) possibly_damaging(0.628) TCGA-F7-A624-01 5 9224815 9224815 G A SEMA5A Missense_Mutation p.T206M 0.31 deleterious(0) probably_damaging(0.994) TCGA-F7-A624-01 5 96112181 96112181 A G ERAP1 Silent p.I915I 0.12 TCGA-F7-A624-01 5 96117518 96117518 C - ERAP1 Frame_Shift_Del p.A776Pfs*43 0.16 TCGA-F7-A624-01 5 96503096 96503096 A G RIOK2 Intron 0.23 TCGA-F7-A624-01 6 100062519 100062519 C T PRDM13 Missense_Mutation p.P670S 0.24 tolerated_low_confidence(0.31) benign(0.026) TCGA-F7-A624-01 6 102074490 102074490 G A GRIK2 Silent p.T173T 0.17 TCGA-F7-A624-01 6 102503397 102503397 T C GRIK2 Missense_Mutation p.V835A 0.22 tolerated(0.07) benign(0.403) TCGA-F7-A624-01 6 10415281 10415281 C T TFAP2A 5'UTR 0.20 TCGA-F7-A624-01 6 106960201 106960201 C T AIM1 5'UTR 0.33 TCGA-F7-A624-01 6 107040176 107040176 C A RTN4IP1 Splice_Site p.X224_splice 0.28 TCGA-F7-A624-01 6 107090875 107090875 T C QRSL1 Missense_Mutation p.I97T 0.20 tolerated(0.34) benign(0.008) TCGA-F7-A624-01 6 108496088 108496088 C T NR2E1 Missense_Mutation p.R74W 0.39 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 6 10882099 10882099 G A GCM2 5'UTR 0.19 TCGA-F7-A624-01 6 10887235 10887235 C T SYCP2L 5'UTR 0.20 TCGA-F7-A624-01 6 109787184 109787184 G A ZBTB24 Missense_Mutation p.T655I 0.22 deleterious(0.04) benign(0.209) TCGA-F7-A624-01 6 110734649 110734649 A G DDO Missense_Mutation p.I34T 0.26 deleterious(0) possibly_damaging(0.625) TCGA-F7-A624-01 6 111306297 111306297 G - RPF2 Frame_Shift_Del p.G39Efs*7 0.12 TCGA-F7-A624-01 6 111631164 111631164 C G REV3L Silent p.L2978L 0.24 TCGA-F7-A624-01 6 112024217 112024217 G A FYN Missense_Mutation p.R190C 0.23 deleterious(0) probably_damaging(0.959) TCGA-F7-A624-01 6 114270368 114270368 A T HDAC2 Silent p.G232G 0.32 TCGA-F7-A624-01 6 116948931 116948931 G A RSPH4A Missense_Mutation p.R354H 0.13 deleterious(0.02) probably_damaging(1) TCGA-F7-A624-01 6 117586925 117586925 T C VGLL2 5'UTR 0.16 TCGA-F7-A624-01 6 121577312 121577312 C T TBC1D32 Missense_Mutation p.R618H 0.20 deleterious(0) probably_damaging(0.969) TCGA-F7-A624-01 6 123318930 123318930 A G CLVS2 Missense_Mutation p.H3R 0.25 deleterious(0.02) probably_damaging(0.933) TCGA-F7-A624-01 6 126080822 126080822 A G HEY2 Silent p.A296A 0.05 TCGA-F7-A624-01 6 126199426 126199426 C T NCOA7 Silent p.T123T 0.26 TCGA-F7-A624-01 6 127765263 127765263 C G KIAA0408 Missense_Mutation p.L692F 0.25 deleterious(0.01) benign(0.002) TCGA-F7-A624-01 6 128150963 128150963 T C THEMIS Missense_Mutation p.I123V 0.20 tolerated(0.1) benign(0.034) TCGA-F7-A624-01 6 128411046 128411046 C T PTPRK Silent p.T418T 0.20 TCGA-F7-A624-01 6 1313290 1313290 G A FOXQ1 Silent p.R117R 0.33 TCGA-F7-A624-01 6 1313539 1313539 C T FOXQ1 Silent p.S200S 0.26 TCGA-F7-A624-01 6 132068068 132068068 A G ENPP3 Missense_Mutation p.Y867C 0.23 deleterious(0.03) probably_damaging(0.927) TCGA-F7-A624-01 6 13307955 13307955 A G TBC1D7 Missense_Mutation p.L181S 0.17 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 6 136564004 136564004 T A MTFR2 Missense_Mutation p.R92S 0.16 deleterious(0.02) possibly_damaging(0.859) TCGA-F7-A624-01 6 137466909 137466909 T C IL22RA2 Missense_Mutation p.E215G 0.26 deleterious(0.01) benign(0.33) TCGA-F7-A624-01 6 138196092 138196092 C T TNFAIP3 Missense_Mutation p.R136C 0.20 deleterious(0.05) possibly_damaging(0.905) TCGA-F7-A624-01 6 138199945 138199945 G - TNFAIP3 Frame_Shift_Del p.P457Lfs*20 0.20 TCGA-F7-A624-01 6 138200106 138200106 C T TNFAIP3 Silent p.H508H 0.30 TCGA-F7-A624-01 6 138584602 138584602 A G KIAA1244 Missense_Mutation p.K661R 0.19 tolerated(0.21) benign(0.014) TCGA-F7-A624-01 6 143095965 143095965 T C HIVEP2 5'UTR 0.27 TCGA-F7-A624-01 6 144093396 144093396 T C PHACTR2 Missense_Mutation p.F412L 0.12 tolerated_low_confidence(1) benign(0.008) TCGA-F7-A624-01 6 144164529 144164529 G A LTV1 5'UTR 0.25 TCGA-F7-A624-01 6 144747450 144747450 T C UTRN Missense_Mutation p.S145P 0.21 deleterious(0) possibly_damaging(0.47) TCGA-F7-A624-01 6 146126460 146126460 C T FBXO30 Missense_Mutation p.G361D 0.16 tolerated(0.64) benign(0) TCGA-F7-A624-01 6 146247394 146247394 T C SHPRH Missense_Mutation p.I1080M 0.22 tolerated(0.12) benign(0) TCGA-F7-A624-01 6 149342555 149342555 T C UST Missense_Mutation p.L292P 0.27 tolerated(0.18) probably_damaging(0.919) TCGA-F7-A624-01 6 149691182 149691182 C T TAB2 Nonsense_Mutation p.R17* 0.09 TCGA-F7-A624-01 6 149721907 149721907 A G SUMO4 3'UTR 0.17 TCGA-F7-A624-01 6 150063646 150063646 A G NUP43 Missense_Mutation p.S128P 0.17 tolerated(0.16) benign(0.002) TCGA-F7-A624-01 6 151673725 151673725 T C AKAP12 Missense_Mutation p.L1400P 0.23 tolerated(0.29) benign(0.025) TCGA-F7-A624-01 6 152674485 152674485 G A SYNE1 Silent p.G3722G 0.23 TCGA-F7-A624-01 6 152722363 152722363 A C SYNE1 Missense_Mutation p.I2313M 0.28 benign(0.082) TCGA-F7-A624-01 6 153323624 153323624 G A MTRF1L Missense_Mutation p.A66V 0.26 deleterious(0.03) benign(0.009) TCGA-F7-A624-01 6 154521162 154521162 C T IPCEF1 Missense_Mutation p.A184T 0.19 tolerated(0.17) possibly_damaging(0.46) TCGA-F7-A624-01 6 154567974 154567974 A G IPCEF1 Intron 0.25 TCGA-F7-A624-01 6 154763422 154763422 A G CNKSR3 Silent p.N73N 0.28 TCGA-F7-A624-01 6 15496799 15496799 A G JARID2 Missense_Mutation p.H448R 0.26 tolerated_low_confidence(0.53) benign(0.013) TCGA-F7-A624-01 6 15497123 15497123 A T JARID2 Missense_Mutation p.E556V 0.29 deleterious(0.02) possibly_damaging(0.623) TCGA-F7-A624-01 6 155153834 155153834 C T SCAF8 Missense_Mutation p.R1041W 0.26 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-F7-A624-01 6 155569238 155569238 C T TIAM2 Missense_Mutation p.L1253F 0.25 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 6 158487492 158487492 G T SYNJ2 Silent p.L514L 0.19 TCGA-F7-A624-01 6 158492712 158492712 G A SYNJ2 Silent p.Q673Q 0.32 TCGA-F7-A624-01 6 159188024 159188024 G A EZR Silent p.G561G 0.28 TCGA-F7-A624-01 6 159636044 159636044 G A FNDC1 Silent p.A176A 0.17 TCGA-F7-A624-01 6 159653369 159653369 C T FNDC1 Missense_Mutation p.R609C 0.22 deleterious_low_confidence(0) unknown(0) TCGA-F7-A624-01 6 160176433 160176433 T C WTAP Silent p.G327G 0.19 TCGA-F7-A624-01 6 160858095 160858095 T C SLC22A3 Silent p.Y380Y 0.05 TCGA-F7-A624-01 6 160874447 160874447 T C SLC22A3 3'Flank 0.19 TCGA-F7-A624-01 6 160968927 160968927 G A LPA Missense_Mutation p.A1733V 0.14 deleterious(0.01) possibly_damaging(0.466) TCGA-F7-A624-01 6 161134060 161134060 C T PLG Silent p.N150N 0.20 TCGA-F7-A624-01 6 161512474 161512474 A G MAP3K4 Missense_Mutation p.T1013A 0.25 tolerated(0.09) benign(0.097) TCGA-F7-A624-01 6 161519378 161519378 C T MAP3K4 Missense_Mutation p.A1198V 0.30 tolerated(0.34) benign(0.034) TCGA-F7-A624-01 6 1624342 1624342 G A GMDS 3'UTR 0.19 TCGA-F7-A624-01 6 16306681 16306681 G A ATXN1 Missense_Mutation p.A776V 0.29 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 6 16327465 16327465 C T ATXN1 Silent p.R359R 0.22 TCGA-F7-A624-01 6 166571971 166571971 G A T Silent p.P380P 0.31 TCGA-F7-A624-01 6 168366483 168366483 G A MLLT4 3'Flank 0.36 TCGA-F7-A624-01 6 170597815 170597815 A G DLL1 Splice_Site p.X138_splice 0.27 TCGA-F7-A624-01 6 170891989 170891989 G T PDCD2 Intron 0.27 TCGA-F7-A624-01 6 17608593 17608593 C A FAM8A1 3'UTR 0.22 TCGA-F7-A624-01 6 17629211 17629211 T C NUP153 Silent p.E1073E 0.25 TCGA-F7-A624-01 6 17809131 17809131 T C KIF13A Silent p.K677K 0.10 TCGA-F7-A624-01 6 18264188 18264188 C - DEK Frame_Shift_Del p.E11Rfs*53 0.23 TCGA-F7-A624-01 6 18465373 18465373 C A RNF144B 3'UTR 0.33 TCGA-F7-A624-01 6 24601352 24601352 A G KIAA0319 5'UTR 0.31 TCGA-F7-A624-01 6 25983935 25983935 T C TRIM38 3'UTR 0.22 TCGA-F7-A624-01 6 26217597 26217597 A G HIST1H2AE 3'UTR 0.26 TCGA-F7-A624-01 6 26240672 26240672 G T HIST1H4F Missense_Mutation p.G7C 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-F7-A624-01 6 26240866 26240866 A G HIST1H4F Silent p.V71V 0.14 TCGA-F7-A624-01 6 27216987 27216987 G A PRSS16 Missense_Mutation p.R149H 0.19 deleterious(0.01) benign(0.117) TCGA-F7-A624-01 6 27834914 27834914 T C HIST1H1B Missense_Mutation p.K132E 0.24 deleterious(0) unknown(0) TCGA-F7-A624-01 6 28502011 28502011 A - GPX5 3'UTR 0.38 TCGA-F7-A624-01 6 28887838 28887838 A T TRIM27 Missense_Mutation p.I233N 0.25 deleterious(0) possibly_damaging(0.781) TCGA-F7-A624-01 6 29342617 29342617 T C OR12D3 Missense_Mutation p.S150G 0.25 tolerated(1) benign(0.005) TCGA-F7-A624-01 6 29342679 29342679 C T OR12D3 Missense_Mutation p.R129H 0.18 tolerated(0.53) benign(0.002) TCGA-F7-A624-01 6 29556088 29556088 G A OR2H2 Missense_Mutation p.A123T 0.24 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 6 29693278 29693278 T C HLA-F Missense_Mutation p.V314A 0.24 tolerated_low_confidence(0.05) benign(0.08) TCGA-F7-A624-01 6 29912358 29912358 T C HLA-A Missense_Mutation p.V326A 0.16 deleterious_low_confidence(0.04) benign(0.156) TCGA-F7-A624-01 6 30308120 30308120 T C TRIM39 Missense_Mutation p.L292S 0.17 deleterious_low_confidence(0.03) benign(0) TCGA-F7-A624-01 6 30569889 30569889 C T PPP1R10 Missense_Mutation p.R846H 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-F7-A624-01 6 30572457 30572459 GAA - PPP1R10 In_Frame_Del p.S337del 0.23 TCGA-F7-A624-01 6 30613721 30613721 G - ATAT1 Frame_Shift_Del p.V330* 0.43 TCGA-F7-A624-01 6 30624426 30624426 A G DHX16 Silent p.P753P 0.13 TCGA-F7-A624-01 6 30633512 30633512 T A DHX16 Splice_Site p.X223_splice 0.24 TCGA-F7-A624-01 6 30639032 30639032 A G DHX16 Missense_Mutation p.V76A 0.25 tolerated(0.78) benign(0.157) TCGA-F7-A624-01 6 30653575 30653575 T A PPP1R18 Missense_Mutation p.E74V 0.20 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-F7-A624-01 6 30675572 30675572 G A MDC1 Silent p.C928C 0.23 TCGA-F7-A624-01 6 31132543 31132543 T C POU5F1 Silent p.S306S 0.22 TCGA-F7-A624-01 6 31379009 31379009 C T MICA Silent p.A162A 0.16 TCGA-F7-A624-01 6 3154891 3154891 G A TUBB2A Missense_Mutation p.P182S 0.19 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-F7-A624-01 6 31584617 31584617 G A AIF1 Silent p.A128A 0.18 TCGA-F7-A624-01 6 31700051 31700051 A G CLIC1 Silent p.D169D 0.27 TCGA-F7-A624-01 6 31729604 31729604 A G MSH5 Missense_Mutation p.T732A 0.27 deleterious(0.03) benign(0.011) TCGA-F7-A624-01 6 31779499 31779499 A T HSPA1L Missense_Mutation p.V84D 0.05 tolerated_low_confidence(0.54) probably_damaging(0.999) TCGA-F7-A624-01 6 31937436 31937436 G A SKIV2L Missense_Mutation p.A1229T 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-F7-A624-01 6 32029986 32029986 G A TNXB Silent p.Y2372Y 0.19 TCGA-F7-A624-01 6 32032761 32032761 G A TNXB Silent p.V2226V 0.17 TCGA-F7-A624-01 6 32041536 32041536 G A RNA5SP206 3'Flank 0.34 TCGA-F7-A624-01 6 32117026 32117026 C T PRRT1 Silent p.Q298Q 0.26 TCGA-F7-A624-01 6 32151935 32151935 G T AGER Intron 0.26 TCGA-F7-A624-01 6 32260981 32260981 T G C6orf10 Missense_Mutation p.K490T 0.05 tolerated(0.11) probably_damaging(0.991) TCGA-F7-A624-01 6 32797232 32797232 C T TAP2 Missense_Mutation p.R626Q 0.21 tolerated(0.91) benign(0.03) TCGA-F7-A624-01 6 32819972 32819972 A G TAP1 Missense_Mutation p.M313T 0.10 tolerated(0.06) benign(0.431) TCGA-F7-A624-01 6 32902689 32902689 T C HLA-DMB 3'UTR 0.25 TCGA-F7-A624-01 6 33139529 33139529 C T COL11A2 Silent p.P951P 0.30 TCGA-F7-A624-01 6 33168031 33168031 C T RXRB Missense_Mutation p.D75N 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-F7-A624-01 6 33170386 33170386 A G SLC39A7 Silent p.T283T 0.25 TCGA-F7-A624-01 6 33235683 33235683 A G VPS52 Missense_Mutation p.S298P 0.23 deleterious(0) probably_damaging(0.995) TCGA-F7-A624-01 6 33264477 33264477 T A RGL2 Missense_Mutation p.D106V 0.22 deleterious(0.03) probably_damaging(0.995) TCGA-F7-A624-01 6 33371120 33371120 C T KIFC1 Missense_Mutation p.R94W 0.26 tolerated(0.14) benign(0.002) TCGA-F7-A624-01 6 34004192 34004192 C G GRM4 Silent p.R565R 0.32 TCGA-F7-A624-01 6 34506121 34506121 T C SPDEF Missense_Mutation p.Y313C 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 6 34512036 34512036 A G SPDEF Missense_Mutation p.L66P 0.25 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-F7-A624-01 6 35205733 35205733 C T SCUBE3 Missense_Mutation p.T256I 0.26 tolerated(0.07) possibly_damaging(0.678) TCGA-F7-A624-01 6 35260407 35260407 C T ZNF76 Silent p.H336H 0.23 TCGA-F7-A624-01 6 35923102 35923102 T C SLC26A8 Missense_Mutation p.N687D 0.23 tolerated(0.28) benign(0.02) TCGA-F7-A624-01 6 36922666 36922666 C T PI16 Missense_Mutation p.R44W 0.31 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 6 37344706 37344708 AGA - RNF8 In_Frame_Del p.K379del 0.11 TCGA-F7-A624-01 6 37605091 37605091 G A MDGA1 3'UTR 0.33 TCGA-F7-A624-01 6 38548147 38548147 G A BTBD9 Missense_Mutation p.A294V 0.22 tolerated(0.28) unknown(0) TCGA-F7-A624-01 6 38670782 38670782 G T GLO1 Missense_Mutation p.L17I 0.26 tolerated(0.27) benign(0.001) TCGA-F7-A624-01 6 38810477 38810478 - T DNAH8 Frame_Shift_Ins p.L1333Ffs*8 0.19 TCGA-F7-A624-01 6 38905911 38905911 T C DNAH8 Missense_Mutation p.Y3692H 0.21 probably_damaging(0.999) TCGA-F7-A624-01 6 39047367 39047367 C - GLP1R Frame_Shift_Del p.L359Cfs*12 0.32 TCGA-F7-A624-01 6 39284104 39284104 T C KCNK16 Intron 0.22 TCGA-F7-A624-01 6 39313554 39313554 G C KIF6 Missense_Mutation p.A748G 0.25 tolerated(0.45) benign(0.001) TCGA-F7-A624-01 6 41248876 41248876 G - TREM1 Frame_Shift_Del p.P141Lfs*32 0.21 TCGA-F7-A624-01 6 41738916 41738916 G A FRS3 Missense_Mutation p.P307L 0.34 tolerated(0.36) benign(0) TCGA-F7-A624-01 6 42016369 42016369 C - TAF8 5'Flank 0.24 TCGA-F7-A624-01 6 42153509 42153509 G A GUCA1B Silent p.C128C 0.23 TCGA-F7-A624-01 6 42236721 42236721 T C TRERF1 Missense_Mutation p.Q203R 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.684) TCGA-F7-A624-01 6 42604929 42604929 G A UBR2 Missense_Mutation p.A619T 0.24 deleterious(0) possibly_damaging(0.786) TCGA-F7-A624-01 6 42933788 42933788 G A PEX6 Missense_Mutation p.R786W 0.20 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 6 42979025 42979025 C A PPP2R5D 3'UTR 0.21 TCGA-F7-A624-01 6 43017324 43017324 T C CUL7 Missense_Mutation p.Q633R 0.22 tolerated(0.13) benign(0.012) TCGA-F7-A624-01 6 43022195 43022195 G A MRPL2 Silent p.G245G 0.22 TCGA-F7-A624-01 6 43154058 43154058 T C CUL9 Silent p.R372R 0.23 TCGA-F7-A624-01 6 43267405 43267405 A G SLC22A7 Missense_Mutation p.T182A 0.05 tolerated(0.24) benign(0.006) TCGA-F7-A624-01 6 43473043 43473043 T C TJAP1 Missense_Mutation p.V375A 0.31 tolerated(0.62) benign(0.003) TCGA-F7-A624-01 6 43638530 43638530 C A RSPH9 Missense_Mutation p.L243M 0.26 tolerated_low_confidence(0.16) probably_damaging(0.934) TCGA-F7-A624-01 6 44197128 44197128 T C SLC29A1 Missense_Mutation p.Y11H 0.24 deleterious(0.05) possibly_damaging(0.502) TCGA-F7-A624-01 6 44224080 44224080 T A SLC35B2 Missense_Mutation p.Q120L 0.09 tolerated(0.13) benign(0.038) TCGA-F7-A624-01 6 44275104 44275104 G A AARS2 Nonsense_Mutation p.R308* 0.60 TCGA-F7-A624-01 6 45390427 45390427 G A RUNX2 Silent p.Q52Q 0.25 TCGA-F7-A624-01 6 45390430 45390430 A G RUNX2 Silent p.Q53Q 0.25 TCGA-F7-A624-01 6 46135786 46135786 T C ENPP5 Missense_Mutation p.T72A 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 6 46659508 46659508 C T TDRD6 Missense_Mutation p.P1215S 0.20 tolerated(0.34) benign(0.023) TCGA-F7-A624-01 6 46659966 46659966 T C TDRD6 Silent p.N1367N 0.30 TCGA-F7-A624-01 6 47779420 47779420 G A OPN5 Missense_Mutation p.V337I 0.20 tolerated(1) benign(0.001) TCGA-F7-A624-01 6 4937972 4937972 G A CDYL Splice_Site p.X374_splice 0.29 TCGA-F7-A624-01 6 49427151 49427151 A - MUT Frame_Shift_Del p.L10Yfs*7 0.17 TCGA-F7-A624-01 6 49754868 49754868 T C PGK2 Silent p.K11K 0.22 TCGA-F7-A624-01 6 50712845 50712845 T - TFAP2D Frame_Shift_Del p.F304Lfs*14 0.14 TCGA-F7-A624-01 6 50740574 50740574 C T TFAP2D Silent p.D452D 0.19 TCGA-F7-A624-01 6 51483775 51483777 TCT - PKHD1 3'UTR 0.34 TCGA-F7-A624-01 6 52996817 52996817 A - GCM1 Frame_Shift_Del p.F143Lfs*19 0.18 TCGA-F7-A624-01 6 55739318 55739318 A G BMP5 Missense_Mutation p.Y116H 0.06 tolerated(0.4) benign(0.003) TCGA-F7-A624-01 6 56362809 56362809 C T DST Missense_Mutation p.A4024T 0.19 benign(0.014) TCGA-F7-A624-01 6 56470188 56470188 T C DST Intron 0.24 TCGA-F7-A624-01 6 56471259 56471259 T C DST Intron 0.21 TCGA-F7-A624-01 6 56497784 56497784 A T DST Missense_Mutation p.S688T 0.18 probably_damaging(0.997) TCGA-F7-A624-01 6 57012089 57012089 C A ZNF451 Nonsense_Mutation p.C402* 0.29 TCGA-F7-A624-01 6 66094366 66094367 - T EYS Frame_Shift_Ins p.N404Kfs*3 0.29 TCGA-F7-A624-01 6 70048869 70048869 A G BAI3 Missense_Mutation p.T1084A 0.09 tolerated(0.12) probably_damaging(0.982) TCGA-F7-A624-01 6 70071052 70071052 T C BAI3 Missense_Mutation p.I1296T 0.19 tolerated(0.09) benign(0.014) TCGA-F7-A624-01 6 70639566 70639566 C T COL19A1 Nonsense_Mutation p.R214* 0.25 TCGA-F7-A624-01 6 7373421 7373421 T C CAGE1 Missense_Mutation p.N544S 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-F7-A624-01 6 73904329 73904329 A G KCNQ5 Missense_Mutation p.K683R 0.05 tolerated(0.83) benign(0.026) TCGA-F7-A624-01 6 74073402 74073402 G A KHDC3L Missense_Mutation p.R158H 0.30 tolerated(0.26) possibly_damaging(0.762) TCGA-F7-A624-01 6 75796251 75796251 T C COL12A1 3'UTR 0.35 TCGA-F7-A624-01 6 7585873 7585873 T C DSP Missense_Mutation p.M2793T 0.22 possibly_damaging(0.904) TCGA-F7-A624-01 6 7586071 7586071 C G DSP Missense_Mutation p.S2859C 0.25 benign(0.401) TCGA-F7-A624-01 6 80838882 80838882 A T BCKDHB Silent p.I93I 0.22 TCGA-F7-A624-01 6 82459576 82459576 A G FAM46A Silent p.L389L 0.31 TCGA-F7-A624-01 6 83810446 83810446 A G DOPEY1 Missense_Mutation p.Y54C 0.22 deleterious(0) probably_damaging(0.969) TCGA-F7-A624-01 6 84417664 84417664 A G SNAP91 5'UTR 0.10 TCGA-F7-A624-01 6 87967022 87967022 T C ZNF292 Silent p.G1225G 0.23 TCGA-F7-A624-01 6 89554217 89554217 A G RNGTT Silent p.D376D 0.29 TCGA-F7-A624-01 6 89793537 89793537 T C PNRC1 Silent p.G202G 0.17 TCGA-F7-A624-01 6 90482396 90482396 A G MDN1 Missense_Mutation p.I660T 0.17 benign(0.334) TCGA-F7-A624-01 6 90661409 90661409 C T BACH2 Missense_Mutation p.G139D 0.17 tolerated(0.26) possibly_damaging(0.835) TCGA-F7-A624-01 6 93979297 93979297 A G EPHA7 Missense_Mutation p.Y511H 0.05 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 6 96971092 96971092 A G UFL1 Missense_Mutation p.T50A 0.23 deleterious(0.01) possibly_damaging(0.839) TCGA-F7-A624-01 6 97246427 97246427 G T GPR63 Missense_Mutation p.P394Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 6 97715756 97715756 A G MMS22L Missense_Mutation p.Y274H 0.15 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 6 99353378 99353378 G A FBXL4 Missense_Mutation p.R343C 0.25 deleterious(0) probably_damaging(0.939) TCGA-F7-A624-01 7 100065214 100065214 T C TSC22D4 Silent p.G313G 0.22 TCGA-F7-A624-01 7 100244703 100244703 G A ACTL6B Missense_Mutation p.A276V 0.25 tolerated(0.65) benign(0.1) TCGA-F7-A624-01 7 100279806 100279806 G A GIGYF1 Silent p.H938H 0.25 TCGA-F7-A624-01 7 100410812 100410812 T G EPHB4 Missense_Mutation p.D592A 0.12 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 7 100468203 100468203 T C TRIP6 Silent p.C279C 0.06 TCGA-F7-A624-01 7 100468206 100468206 T C TRIP6 Silent p.G280G 0.24 TCGA-F7-A624-01 7 100609603 100609603 G C MUC3A Missense_Mutation p.A779P 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-F7-A624-01 7 100675253 100675253 A G MUC17 Missense_Mutation p.T186A 0.23 benign(0.125) TCGA-F7-A624-01 7 100678334 100678334 A G MUC17 Missense_Mutation p.T1213A 0.17 unknown(0) TCGA-F7-A624-01 7 100732416 100732416 C T TRIM56 Missense_Mutation p.A608V 0.27 tolerated(0.06) benign(0.109) TCGA-F7-A624-01 7 100799968 100799968 C T AP1S1 Missense_Mutation p.R33C 0.28 deleterious(0) probably_damaging(0.96) TCGA-F7-A624-01 7 101833102 101833102 G A CUX1 Missense_Mutation p.E354K 0.24 deleterious(0.04) unknown(0) TCGA-F7-A624-01 7 101840547 101840547 A G CUX1 Missense_Mutation p.N630S 0.25 deleterious(0) unknown(0) TCGA-F7-A624-01 7 101921271 101921271 A G CUX1 Missense_Mutation p.S537G 0.22 tolerated(0.08) benign(0.007) TCGA-F7-A624-01 7 102743861 102743861 C A NAPEPLD 3'UTR 0.15 TCGA-F7-A624-01 7 103113191 103113191 G A RELN 3'UTR 0.36 TCGA-F7-A624-01 7 103155699 103155699 G A RELN Silent p.R2684R 0.23 TCGA-F7-A624-01 7 103175892 103175892 C A RELN Missense_Mutation p.W2407L 0.20 deleterious(0.02) benign(0.258) TCGA-F7-A624-01 7 105205728 105205728 T C RINT1 Silent p.L631L 0.16 TCGA-F7-A624-01 7 105894879 105894879 T C NAMPT Silent p.L387L 0.28 TCGA-F7-A624-01 7 106508498 106508498 C T PIK3CG Silent p.D164D 0.11 TCGA-F7-A624-01 7 106508556 106508556 C T PIK3CG Missense_Mutation p.R184C 0.16 deleterious(0) possibly_damaging(0.865) TCGA-F7-A624-01 7 107115416 107115416 G A GPR22 Missense_Mutation p.R304Q 0.19 deleterious(0.01) possibly_damaging(0.855) TCGA-F7-A624-01 7 107432362 107432362 C T SLC26A3 Missense_Mutation p.D99N 0.23 tolerated(1) benign(0.001) TCGA-F7-A624-01 7 107576055 107576055 T C LAMB1 Silent p.A1331A 0.21 TCGA-F7-A624-01 7 107816895 107816895 G A NRCAM Missense_Mutation p.A1044V 0.23 tolerated(0.06) benign(0.386) TCGA-F7-A624-01 7 107824692 107824692 G A NRCAM Missense_Mutation p.T766M 0.24 deleterious(0.04) benign(0.206) TCGA-F7-A624-01 7 110764429 110764429 C T LRRN3 Missense_Mutation p.A534V 0.13 deleterious(0.05) benign(0.16) TCGA-F7-A624-01 7 111580270 111580270 T C DOCK4 Missense_Mutation p.N291S 0.25 tolerated(0.17) possibly_damaging(0.519) TCGA-F7-A624-01 7 1132010 1132010 T C GPER1 Missense_Mutation p.W216R 0.24 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 11581241 11581241 G A THSD7A Missense_Mutation p.R543W 0.20 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 116918120 116918120 C - WNT2 3'UTR 0.29 TCGA-F7-A624-01 7 119915308 119915308 C T KCND2 Missense_Mutation p.P208S 0.34 tolerated(0.12) probably_damaging(1) TCGA-F7-A624-01 7 119915701 119915701 G A KCND2 Missense_Mutation p.A339T 0.23 tolerated(0.06) probably_damaging(1) TCGA-F7-A624-01 7 120991304 120991304 G A FAM3C Missense_Mutation p.R163W 0.24 deleterious(0) possibly_damaging(0.54) TCGA-F7-A624-01 7 122337813 122337813 T C RNF133 3'UTR 0.22 TCGA-F7-A624-01 7 123269113 123269113 T - ASB15 Frame_Shift_Del p.F356Lfs*23 0.22 TCGA-F7-A624-01 7 123346845 123346845 A G WASL Silent p.N96N 0.28 TCGA-F7-A624-01 7 126173817 126173817 C T GRM8 Missense_Mutation p.R540H 0.18 tolerated(0.44) benign(0.04) TCGA-F7-A624-01 7 12692503 12692503 C T SCIN 3'UTR 0.50 TCGA-F7-A624-01 7 127669070 127669070 C T LRRC4 Missense_Mutation p.A542T 0.31 deleterious(0.03) benign(0.205) TCGA-F7-A624-01 7 127714648 127714648 A G SND1 Missense_Mutation p.H625R 0.10 tolerated(0.3) benign(0.006) TCGA-F7-A624-01 7 128315777 128315777 G A FAM71F2 Missense_Mutation p.V77M 0.31 tolerated(0.54) benign(0.04) TCGA-F7-A624-01 7 128610312 128610313 - A TNPO3 Frame_Shift_Ins p.G830Wfs*26 0.23 TCGA-F7-A624-01 7 129064949 129064949 A G AHCYL2 Missense_Mutation p.K559E 0.25 tolerated(0.26) benign(0.073) TCGA-F7-A624-01 7 129066950 129066950 A G AHCYL2 3'UTR 0.17 TCGA-F7-A624-01 7 129096403 129096403 C T STRIP2 Missense_Mutation p.P320S 0.30 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 129906728 129906728 A G CPA2 Missense_Mutation p.M3V 0.27 deleterious(0.02) benign(0.144) TCGA-F7-A624-01 7 131189175 131189177 CTC - PODXL In_Frame_Del p.E524del 0.14 TCGA-F7-A624-01 7 132973733 132973733 C T EXOC4 Missense_Mutation p.R112W 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 138603663 138603663 G A KIAA1549 Missense_Mutation p.R237C 0.23 tolerated_low_confidence(0.07) benign(0.443) TCGA-F7-A624-01 7 139285288 139285288 T C HIPK2 Silent p.L770L 0.32 TCGA-F7-A624-01 7 139756833 139756833 A G PARP12 Missense_Mutation p.C195R 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 139798694 139798694 G C KDM7A Missense_Mutation p.Q635E 0.12 tolerated(0.34) benign(0.002) TCGA-F7-A624-01 7 140171758 140171758 T C MKRN1 Missense_Mutation p.D80G 0.22 deleterious(0) probably_damaging(0.986) TCGA-F7-A624-01 7 140487363 140487363 A G BRAF Missense_Mutation p.F388L 0.12 tolerated(1) benign(0) TCGA-F7-A624-01 7 140500208 140500208 G T BRAF Missense_Mutation p.L312I 0.22 tolerated(0.42) benign(0.133) TCGA-F7-A624-01 7 141537832 141537832 G A PRSS37 Silent p.V86V 0.21 TCGA-F7-A624-01 7 141736759 141736759 C T MGAM Missense_Mutation p.A738V 0.22 tolerated(0.51) benign(0.025) TCGA-F7-A624-01 7 142176399 142176399 C T TRBV7-4 Missense_Mutation p.V93I 0.23 tolerated(0.36) benign(0.005) TCGA-F7-A624-01 7 142571233 142571233 C A TRPV6 Missense_Mutation p.A586S 0.28 deleterious(0.02) benign(0.252) TCGA-F7-A624-01 7 142627452 142627452 C T TRPV5 Missense_Mutation p.R73Q 0.23 tolerated(0.3) benign(0.015) TCGA-F7-A624-01 7 143001775 143001775 G A CASP2 Missense_Mutation p.A376T 0.16 deleterious(0) probably_damaging(0.992) TCGA-F7-A624-01 7 143088755 143088755 G A EPHA1 Missense_Mutation p.A937V 0.23 tolerated(0.12) possibly_damaging(0.841) TCGA-F7-A624-01 7 143175750 143175750 A G TAS2R41 Missense_Mutation p.N262S 0.25 tolerated(0.94) benign(0.004) TCGA-F7-A624-01 7 143882886 143882886 T C CTAGE4 Missense_Mutation p.Y764H 0.13 deleterious(0.02) probably_damaging(0.99) TCGA-F7-A624-01 7 148876542 148876542 G A ZNF398 Silent p.L526L 0.24 TCGA-F7-A624-01 7 148975579 148975579 G A ZNF783 Missense_Mutation p.D255N 0.31 tolerated(0.2) benign(0.001) TCGA-F7-A624-01 7 149152363 149152363 G A ZNF777 Silent p.L251L 0.08 TCGA-F7-A624-01 7 149492408 149492408 C A SSPO RNA 0.27 TCGA-F7-A624-01 7 149505380 149505380 G A SSPO RNA 0.19 TCGA-F7-A624-01 7 149523280 149523280 G A SSPO RNA 0.23 TCGA-F7-A624-01 7 150069682 150069682 G A REPIN1 Missense_Mutation p.R508H 0.17 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 150171146 150171146 G A GIMAP8 Silent p.P243P 0.30 TCGA-F7-A624-01 7 150648901 150648901 G A KCNH2 Missense_Mutation p.A527V 0.26 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 150764061 150764061 C - SLC4A2 Frame_Shift_Del p.H318Tfs*10 0.27 TCGA-F7-A624-01 7 150878067 150878067 T C ASB10 Missense_Mutation p.N355D 0.21 deleterious(0.03) possibly_damaging(0.717) TCGA-F7-A624-01 7 150931160 150931160 T G CHPF2 Silent p.S21S 0.25 TCGA-F7-A624-01 7 151064135 151064135 A - NUB1 Frame_Shift_Del p.K330Nfs*2 0.22 TCGA-F7-A624-01 7 151791468 151791468 A - GALNT11 Frame_Shift_Del p.K54Nfs*26 0.22 TCGA-F7-A624-01 7 151849901 151849901 G A KMT2C Nonsense_Mutation p.R4139* 0.29 TCGA-F7-A624-01 7 151880197 151880197 T C KMT2C Silent p.V1709V 0.08 TCGA-F7-A624-01 7 155534609 155534609 T A RBM33 Missense_Mutation p.S716T 0.26 tolerated(0.26) unknown(0) TCGA-F7-A624-01 7 156979697 156979697 T C UBE3C Missense_Mutation p.M438T 0.26 deleterious(0.01) benign(0.017) TCGA-F7-A624-01 7 158829514 158829514 T G VIPR2 Missense_Mutation p.Y226S 0.08 deleterious(0) possibly_damaging(0.784) TCGA-F7-A624-01 7 16640449 16640449 T C ANKMY2 Silent p.E421E 0.31 TCGA-F7-A624-01 7 17930068 17930068 A G SNX13 Missense_Mutation p.Y120H 0.22 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 18767277 18767277 A G HDAC9 Silent p.G602G 0.15 TCGA-F7-A624-01 7 18833006 18833006 C A HDAC9 Silent p.S751S 0.45 TCGA-F7-A624-01 7 19184834 19184834 G A FERD3L Missense_Mutation p.P51L 0.26 tolerated(0.11) benign(0.11) TCGA-F7-A624-01 7 20198531 20198531 A G MACC1 Missense_Mutation p.F485L 0.27 tolerated(0.75) benign(0.059) TCGA-F7-A624-01 7 20441436 20441436 C T ITGB8 Silent p.T458T 0.18 TCGA-F7-A624-01 7 21677247 21677247 G A DNAH11 Missense_Mutation p.A1587T 0.33 benign(0.046) TCGA-F7-A624-01 7 21939667 21939667 C - DNAH11 Frame_Shift_Del p.T4421Qfs*72 0.09 TCGA-F7-A624-01 7 21947818 21947818 C T CDCA7L Missense_Mutation p.R204Q 0.35 tolerated(0.09) benign(0.279) TCGA-F7-A624-01 7 23293794 23293794 G A GPNMB Missense_Mutation p.R77H 0.25 tolerated(0.42) benign(0.003) TCGA-F7-A624-01 7 23299746 23299746 A G GPNMB Missense_Mutation p.Y230C 0.23 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 7 23353164 23353165 CT - IGF2BP3 Frame_Shift_Del p.R501Sfs*11 0.20 TCGA-F7-A624-01 7 24324889 24324889 C T NPY Silent p.S10S 0.18 TCGA-F7-A624-01 7 26778441 26778441 C T SKAP2 Missense_Mutation p.V148I 0.17 tolerated(0.83) benign(0.088) TCGA-F7-A624-01 7 2687628 2687628 T C TTYH3 Missense_Mutation p.V221A 0.19 deleterious(0.02) probably_damaging(0.956) TCGA-F7-A624-01 7 27170286 27170286 A G HOXA4 Missense_Mutation p.Y23H 0.20 deleterious(0) benign(0.403) TCGA-F7-A624-01 7 27185535 27185535 A G HOXA6 Silent p.G148G 0.23 TCGA-F7-A624-01 7 27203140 27203140 A G HOXA9 3'UTR 0.33 TCGA-F7-A624-01 7 27205095 27205095 G A HOXA9 5'UTR 0.16 TCGA-F7-A624-01 7 28848871 28848871 G A CREB5 Missense_Mutation p.R365H 0.26 deleterious(0.04) unknown(0) TCGA-F7-A624-01 7 2979480 2979480 T G CARD11 Missense_Mutation p.D256A 0.22 tolerated(0.18) possibly_damaging(0.881) TCGA-F7-A624-01 7 30118483 30118483 C A PLEKHA8 3'UTR 0.27 TCGA-F7-A624-01 7 31126020 31126020 T C ADCYAP1R1 Missense_Mutation p.V231A 0.26 deleterious(0.01) possibly_damaging(0.5) TCGA-F7-A624-01 7 31378346 31378346 G A NEUROD6 Silent p.G179G 0.28 TCGA-F7-A624-01 7 33390830 33390830 G A BBS9 Splice_Site p.X478_splice 0.30 TCGA-F7-A624-01 7 34118737 34118737 C T BMPER Silent p.C449C 0.23 TCGA-F7-A624-01 7 34125525 34125525 T C BMPER Silent p.F522F 0.25 TCGA-F7-A624-01 7 34818098 34818098 T A NPSR1 Missense_Mutation p.I102N 0.17 deleterious(0) probably_damaging(0.982) TCGA-F7-A624-01 7 35280609 35280609 T C TBX20 Missense_Mutation p.H232R 0.25 deleterious(0.01) possibly_damaging(0.874) TCGA-F7-A624-01 7 35709871 35709871 C T HERPUD2 Missense_Mutation p.S98N 0.20 tolerated(0.16) benign(0.001) TCGA-F7-A624-01 7 35913282 35913282 A G SEPT7 Missense_Mutation p.K138E 0.17 deleterious(0.01) possibly_damaging(0.702) TCGA-F7-A624-01 7 36338672 36338672 T C EEPD1 Missense_Mutation p.S523P 0.05 deleterious(0.01) possibly_damaging(0.877) TCGA-F7-A624-01 7 36464330 36464331 - A ANLN Frame_Shift_Ins p.T899Nfs*34 0.23 TCGA-F7-A624-01 7 36934500 36934500 G A ELMO1 Silent p.S520S 0.25 TCGA-F7-A624-01 7 37989894 37989894 T C EPDR1 Missense_Mutation p.F191L 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-F7-A624-01 7 38305256 38305256 A - TRGC1 Frame_Shift_Del p.S9Pfs*55 0.18 TCGA-F7-A624-01 7 38816315 38816315 A G VPS41 Silent p.V282V 0.27 TCGA-F7-A624-01 7 39500223 39500223 C T POU6F2 Missense_Mutation p.R494W 0.13 deleterious(0) unknown(0) TCGA-F7-A624-01 7 40228095 40228095 A G SUGCT Silent p.G83G 0.30 TCGA-F7-A624-01 7 43827605 43827605 C T BLVRA Silent p.L39L 0.23 TCGA-F7-A624-01 7 44040608 44040608 G A SPDYE1 5'UTR 0.23 TCGA-F7-A624-01 7 47947813 47947813 G A PKD1L1 Silent p.N421N 0.30 TCGA-F7-A624-01 7 48147071 48147071 T C UPP1 Missense_Mutation p.F254L 0.19 tolerated(0.07) possibly_damaging(0.535) TCGA-F7-A624-01 7 48313595 48313595 A - ABCA13 Frame_Shift_Del p.K1446Nfs*11 0.18 TCGA-F7-A624-01 7 48314867 48314867 T C ABCA13 Silent p.G1868G 0.24 TCGA-F7-A624-01 7 48317939 48317939 T C ABCA13 Missense_Mutation p.I2383T 0.28 benign(0.031) TCGA-F7-A624-01 7 48318466 48318466 T C ABCA13 Missense_Mutation p.Y2559H 0.27 probably_damaging(0.987) TCGA-F7-A624-01 7 48318628 48318628 G A ABCA13 Missense_Mutation p.D2613N 0.12 benign(0.347) TCGA-F7-A624-01 7 48467465 48467465 T C ABCA13 Missense_Mutation p.Y4188H 0.16 benign(0.001) TCGA-F7-A624-01 7 4874654 4874654 G A RADIL Missense_Mutation p.H334Y 0.31 deleterious(0.02) benign(0.002) TCGA-F7-A624-01 7 50450322 50450322 G A IKZF1 Missense_Mutation p.G169E 0.30 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 7 5104851 5104851 A G RBAK Silent p.V588V 0.09 TCGA-F7-A624-01 7 5330489 5330489 A G SLC29A4 Missense_Mutation p.Y99C 0.26 deleterious(0) probably_damaging(0.945) TCGA-F7-A624-01 7 5348802 5348802 G A TNRC18 Silent p.P2862P 0.20 TCGA-F7-A624-01 7 5427892 5427892 C T TNRC18 Silent p.T521T 0.15 TCGA-F7-A624-01 7 54820004 54820004 A C SEC61G 3'UTR 0.29 TCGA-F7-A624-01 7 55238214 55238214 A T EGFR Intron 0.29 TCGA-F7-A624-01 7 5541181 5541181 C T FBXL18 Missense_Mutation p.G240D 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 55467744 55467744 T A LANCL2 Missense_Mutation p.Y209N 0.25 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 7 56148943 56148943 C T PHKG1 Missense_Mutation p.R355H 0.35 tolerated(0.62) benign(0.112) TCGA-F7-A624-01 7 56171984 56171984 C T CHCHD2 Missense_Mutation p.A79T 0.27 deleterious(0.02) probably_damaging(0.951) TCGA-F7-A624-01 7 57528841 57528841 C T ZNF716 Missense_Mutation p.S225F 0.13 tolerated(0.61) benign(0.039) TCGA-F7-A624-01 7 5944902 5944902 T C CCZ1 Splice_Site p.X233_splice 0.10 TCGA-F7-A624-01 7 6182587 6182587 T C USP42 Silent p.L274L 0.26 TCGA-F7-A624-01 7 6370604 6370604 A G FAM220A Missense_Mutation p.L61S 0.13 tolerated(0.11) possibly_damaging(0.556) TCGA-F7-A624-01 7 6476142 6476142 C T DAGLB Silent p.P90P 0.25 TCGA-F7-A624-01 7 65444432 65444432 G T GUSB Silent p.T226T 0.09 TCGA-F7-A624-01 7 66767852 66767852 C T STAG3L4 RNA 0.43 TCGA-F7-A624-01 7 6864105 6864105 T C CCZ1B Missense_Mutation p.E98G 0.22 tolerated(0.27) benign(0.158) TCGA-F7-A624-01 7 72209691 72209691 A G TYW1B Intron 0.55 TCGA-F7-A624-01 7 72361214 72361214 T C POM121 5'UTR 0.23 TCGA-F7-A624-01 7 72657959 72657959 T C GTF2IRD2P1 RNA 0.22 TCGA-F7-A624-01 7 73085543 73085543 T C VPS37D Missense_Mutation p.V198A 0.12 tolerated(0.17) benign(0.074) TCGA-F7-A624-01 7 73254873 73254873 C T WBSCR27 Missense_Mutation p.A87T 0.28 tolerated(0.32) benign(0.098) TCGA-F7-A624-01 7 73638350 73638350 G A LAT2 Missense_Mutation p.A151T 0.29 tolerated(0.17) benign(0.299) TCGA-F7-A624-01 7 73811420 73811420 C T CLIP2 Missense_Mutation p.R913W 0.33 deleterious(0) probably_damaging(0.955) TCGA-F7-A624-01 7 73973362 73973362 T C GTF2IRD1 Missense_Mutation p.F792S 0.06 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 7 74113333 74113333 A C GTF2I Missense_Mutation p.K94T 0.27 deleterious(0.01) benign(0.127) TCGA-F7-A624-01 7 74197366 74197366 C T NCF1 Missense_Mutation p.T179M 0.32 tolerated(0.19) benign(0.018) TCGA-F7-A624-01 7 75045945 75045945 C A POM121C 3'Flank 0.19 TCGA-F7-A624-01 7 75104041 75104041 A G POM121C 5'UTR 0.19 TCGA-F7-A624-01 7 75889305 75889305 G T SRRM3 Silent p.V139V 0.41 TCGA-F7-A624-01 7 76112069 76112069 C T DTX2 Silent p.S171S 0.29 TCGA-F7-A624-01 7 7612634 7612634 A G MIOS Silent p.K176K 0.25 TCGA-F7-A624-01 7 77379267 77379267 T A RSBN1L Nonsense_Mutation p.Y410* 0.21 TCGA-F7-A624-01 7 80091946 80091946 T C GNAT3 Missense_Mutation p.M198V 0.19 tolerated(0.16) probably_damaging(0.997) TCGA-F7-A624-01 7 80546021 80546021 T C SEMA3C Missense_Mutation p.Q26R 0.31 tolerated(0.53) benign(0.001) TCGA-F7-A624-01 7 81978944 81978944 C T CACNA2D1 Silent p.K39K 0.15 TCGA-F7-A624-01 7 82387870 82387870 A G PCLO 3'UTR 0.22 TCGA-F7-A624-01 7 83764107 83764107 T A SEMA3A Intron 0.27 TCGA-F7-A624-01 7 86416334 86416334 G A GRM3 Missense_Mutation p.R409H 0.31 tolerated(0.09) benign(0.007) TCGA-F7-A624-01 7 87507395 87507395 A G DBF4 Missense_Mutation p.N25S 0.21 tolerated(0.66) possibly_damaging(0.71) TCGA-F7-A624-01 7 87840218 87840218 C T SRI Silent p.R76R 0.08 TCGA-F7-A624-01 7 89856305 89856305 T C STEAP2 Silent p.N171N 0.17 TCGA-F7-A624-01 7 89856547 89856547 T C STEAP2 Missense_Mutation p.I252T 0.17 deleterious(0) benign(0.146) TCGA-F7-A624-01 7 89927085 89927085 C T C7orf63 Missense_Mutation p.P600S 0.17 tolerated(1) benign(0.002) TCGA-F7-A624-01 7 905684 905684 T C SUN1 Missense_Mutation p.S654P 0.34 deleterious(0) probably_damaging(0.97) TCGA-F7-A624-01 7 91603150 91603150 T A AKAP9 Missense_Mutation p.D58E 0.23 benign(0.002) TCGA-F7-A624-01 7 91870364 91870364 A G KRIT1 Silent p.L69L 0.06 TCGA-F7-A624-01 7 91972488 91972488 C T ANKIB1 Missense_Mutation p.S313F 0.07 deleterious(0) probably_damaging(0.961) TCGA-F7-A624-01 7 92760603 92760603 T C SAMD9L Missense_Mutation p.N1561S 0.25 tolerated(1) benign(0.002) TCGA-F7-A624-01 7 92761081 92761081 G A SAMD9L Missense_Mutation p.P1402S 0.19 tolerated(0.24) benign(0.075) TCGA-F7-A624-01 7 94252690 94252690 C T SGCE Missense_Mutation p.R137H 0.21 tolerated(0.41) probably_damaging(0.966) TCGA-F7-A624-01 7 94539456 94539456 A G PPP1R9A Missense_Mutation p.T11A 0.15 deleterious(0.01) benign(0.055) TCGA-F7-A624-01 7 95115461 95115461 T C ASB4 Missense_Mutation p.Y60H 0.20 tolerated(0.06) probably_damaging(0.936) TCGA-F7-A624-01 7 95799391 95799391 A G SLC25A13 Missense_Mutation p.V427A 0.20 deleterious(0) benign(0.052) TCGA-F7-A624-01 7 95822425 95822425 G A SLC25A13 Missense_Mutation p.A180V 0.23 tolerated(0.09) benign(0.117) TCGA-F7-A624-01 7 96650052 96650052 T C DLX5 Missense_Mutation p.Y289C 0.17 deleterious(0) probably_damaging(0.984) TCGA-F7-A624-01 7 97833441 97833441 G A LMTK2 Missense_Mutation p.A1476T 0.20 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 7 98457952 98457952 A G TMEM130 Missense_Mutation p.V134A 0.28 deleterious(0.02) possibly_damaging(0.615) TCGA-F7-A624-01 7 98574264 98574264 A G TRRAP Silent p.T2699T 0.07 TCGA-F7-A624-01 7 99023101 99023101 T C ATP5J2-PTCD1 Missense_Mutation p.T401A 0.20 tolerated(0.84) benign(0.001) TCGA-F7-A624-01 7 99023173 99023173 C T ATP5J2-PTCD1 Missense_Mutation p.A377T 0.29 tolerated(0.15) benign(0.376) TCGA-F7-A624-01 7 99705144 99705144 T C TAF6 Missense_Mutation p.T624A 0.26 tolerated_low_confidence(0.25) benign(0.024) TCGA-F7-A624-01 7 99711975 99711975 G T TAF6 Intron 0.45 TCGA-F7-A624-01 7 99722182 99722182 T C CNPY4 Missense_Mutation p.Y171H 0.26 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 7 99769416 99769416 T C GPC2 Missense_Mutation p.N386D 0.41 tolerated(0.1) possibly_damaging(0.699) TCGA-F7-A624-01 7 99951001 99951001 C A PILRB 5'UTR 0.39 TCGA-F7-A624-01 8 100514039 100514039 A G VPS13B Missense_Mutation p.K1332R 0.37 deleterious(0) probably_damaging(0.952) TCGA-F7-A624-01 8 101084391 101084391 T A RGS22 Missense_Mutation p.D136V 0.15 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 8 102701613 102701613 A G NCALD Missense_Mutation p.F169S 0.20 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 8 103293654 103293654 A G UBR5 Silent p.D1930D 0.08 TCGA-F7-A624-01 8 103359222 103359222 C T UBR5 Missense_Mutation p.R162Q 0.23 tolerated(0.16) possibly_damaging(0.78) TCGA-F7-A624-01 8 104341955 104341955 A G FZD6 Silent p.K538K 0.16 TCGA-F7-A624-01 8 104419961 104419961 A G SLC25A32 Missense_Mutation p.L69S 0.17 deleterious(0.04) possibly_damaging(0.598) TCGA-F7-A624-01 8 10469023 10469023 C T RP1L1 Missense_Mutation p.C862Y 0.23 possibly_damaging(0.903) TCGA-F7-A624-01 8 104831813 104831813 T A RIMS2 Intron 0.10 TCGA-F7-A624-01 8 10583449 10583449 T C SOX7 Silent p.E374E 0.22 TCGA-F7-A624-01 8 10755966 10755966 C T XKR6 Silent p.V474V 0.28 TCGA-F7-A624-01 8 107719358 107719358 G A OXR1 Missense_Mutation p.D538N 0.13 tolerated(0.09) benign(0.016) TCGA-F7-A624-01 8 108315570 108315570 C A ANGPT1 Missense_Mutation p.E278D 0.20 tolerated(0.33) benign(0.003) TCGA-F7-A624-01 8 110131623 110131623 C G TRHR Missense_Mutation p.A379G 0.09 tolerated_low_confidence(0.44) benign(0.008) TCGA-F7-A624-01 8 110305700 110305700 T C NUDCD1 Silent p.S171S 0.18 TCGA-F7-A624-01 8 110437463 110437463 T C PKHD1L1 Splice_Site p.X949_splice 0.10 TCGA-F7-A624-01 8 110457059 110457059 G A PKHD1L1 Missense_Mutation p.R1654Q 0.22 deleterious(0.03) benign(0.079) TCGA-F7-A624-01 8 110476892 110476892 T - PKHD1L1 Frame_Shift_Del p.F2612Lfs*63 0.21 TCGA-F7-A624-01 8 110587009 110587009 A G SYBU 3'UTR 0.12 TCGA-F7-A624-01 8 113236961 113236961 T C CSMD3 3'UTR 0.30 TCGA-F7-A624-01 8 116617163 116617163 A G TRPS1 Missense_Mutation p.Y345H 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F7-A624-01 8 116631857 116631857 G - TRPS1 Frame_Shift_Del p.S157Qfs*34 0.26 TCGA-F7-A624-01 8 117859683 117859683 G - RAD21 3'UTR 0.23 TCGA-F7-A624-01 8 117861266 117861266 A G RAD21 Silent p.D541D 0.19 TCGA-F7-A624-01 8 119945255 119945255 G A TNFRSF11B Silent p.C105C 0.21 TCGA-F7-A624-01 8 11996053 11996053 T C USP17L2 Missense_Mutation p.R73G 0.14 deleterious(0.02) benign(0.077) TCGA-F7-A624-01 8 12040075 12040075 T C FAM86B1 3'UTR 0.16 TCGA-F7-A624-01 8 121219311 121219311 C T COL14A1 Missense_Mutation p.T390I 0.16 tolerated(0.11) possibly_damaging(0.697) TCGA-F7-A624-01 8 121293249 121293249 T C COL14A1 Missense_Mutation p.F1259L 0.06 deleterious(0.01) benign(0.021) TCGA-F7-A624-01 8 122641078 122641078 G A HAS2 Missense_Mutation p.S168L 0.38 tolerated(0.31) benign(0) TCGA-F7-A624-01 8 123965010 123965010 T A ZHX2 Silent p.R420R 0.24 TCGA-F7-A624-01 8 124156981 124156981 T C TBC1D31 Missense_Mutation p.F954L 0.15 tolerated(0.7) benign(0.001) TCGA-F7-A624-01 8 124359353 124359353 T C ATAD2 Missense_Mutation p.T731A 0.13 tolerated(0.61) benign(0) TCGA-F7-A624-01 8 124448756 124448756 A G WDYHV1 Missense_Mutation p.T100A 0.17 deleterious(0.01) benign(0.159) TCGA-F7-A624-01 8 124796763 124796767 ACTCT - FAM91A1 Frame_Shift_Del p.L255* 0.27 TCGA-F7-A624-01 8 125047642 125047642 T C FER1L6 Missense_Mutation p.M804T 0.07 tolerated(0.54) benign(0) TCGA-F7-A624-01 8 125334372 125334372 A T TMEM65 Missense_Mutation p.N163K 0.23 deleterious(0) probably_damaging(0.993) TCGA-F7-A624-01 8 12595535 12595535 G A LONRF1 Missense_Mutation p.S361F 0.23 tolerated(0.53) benign(0.003) TCGA-F7-A624-01 8 12595579 12595579 A G LONRF1 Silent p.C346C 0.19 TCGA-F7-A624-01 8 126059447 126059447 A G KIAA0196 Splice_Site p.X835_splice 0.18 TCGA-F7-A624-01 8 126059484 126059484 T C KIAA0196 Silent p.R823R 0.10 TCGA-F7-A624-01 8 127569449 127569449 A G FAM84B Silent p.G62G 0.29 TCGA-F7-A624-01 8 12957371 12957371 G A DLC1 Silent p.G825G 0.05 TCGA-F7-A624-01 8 131149240 131149240 T C ASAP1 Silent p.V375V 0.17 TCGA-F7-A624-01 8 132952768 132952768 T G EFR3A Silent p.A11A 0.32 TCGA-F7-A624-01 8 13357591 13357591 T C DLC1 5'UTR 0.24 TCGA-F7-A624-01 8 133895231 133895231 G A TG Silent p.E354E 0.14 TCGA-F7-A624-01 8 139164668 139164668 A G FAM135B Missense_Mutation p.S684P 0.39 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 8 139165179 139165179 C T FAM135B Silent p.V513V 0.06 TCGA-F7-A624-01 8 141525311 141525311 G C CHRAC1 Missense_Mutation p.D121H 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-F7-A624-01 8 141551423 141551423 T C AGO2 Missense_Mutation p.Y625C 0.14 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 8 141889621 141889621 A G PTK2 Missense_Mutation p.V104A 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-F7-A624-01 8 142228394 142228394 T C SLC45A4 Missense_Mutation p.I398V 0.20 deleterious(0.04) probably_damaging(0.918) TCGA-F7-A624-01 8 142228901 142228901 C T SLC45A4 Missense_Mutation p.V229I 0.28 tolerated(0.45) benign(0.001) TCGA-F7-A624-01 8 143425546 143425546 A G TSNARE1 Missense_Mutation p.Y176H 0.09 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-F7-A624-01 8 144124506 144124506 T C C8orf31 Splice_Site p.X29_splice 0.17 TCGA-F7-A624-01 8 144523233 144523233 G A ZC3H3 Missense_Mutation p.R789C 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 8 144644191 144644191 A T GSDMD Missense_Mutation p.T296S 0.18 tolerated(0.07) benign(0.122) TCGA-F7-A624-01 8 144810789 144810789 G A FAM83H Missense_Mutation p.S281F 0.18 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 8 144899293 144899295 AGG - PUF60 In_Frame_Del p.P389del 0.42 TCGA-F7-A624-01 8 144940348 144940348 G A EPPK1 Silent p.P2358P 0.04 TCGA-F7-A624-01 8 144996316 144996316 C T PLEC Missense_Mutation p.R2695Q 0.20 benign(0.087) TCGA-F7-A624-01 8 145001841 145001841 G A PLEC Nonsense_Mutation p.Q1302* 0.30 TCGA-F7-A624-01 8 145006691 145006692 - A PLEC Frame_Shift_Ins p.L755Ffs*10 0.35 TCGA-F7-A624-01 8 145007143 145007143 C T PLEC Missense_Mutation p.D656N 0.27 unknown(0) TCGA-F7-A624-01 8 145024532 145024532 G - PLEC Frame_Shift_Del p.H115Tfs*138 0.52 TCGA-F7-A624-01 8 145024806 145024806 G A PLEC Silent p.G23G 0.30 TCGA-F7-A624-01 8 145057500 145057500 G A PARP10 Missense_Mutation p.R753C 0.21 tolerated(0.09) benign(0.014) TCGA-F7-A624-01 8 145096225 145096225 C T SPATC1 Missense_Mutation p.R467W 0.23 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 8 145106259 145106259 A G OPLAH Missense_Mutation p.Y1279H 0.20 tolerated(0.38) benign(0.002) TCGA-F7-A624-01 8 145106322 145106322 C T OPLAH Missense_Mutation p.D1258N 0.15 tolerated(0.08) possibly_damaging(0.497) TCGA-F7-A624-01 8 145533482 145533482 A G HSF1 Missense_Mutation p.I130V 0.07 tolerated(0.53) benign(0.001) TCGA-F7-A624-01 8 145584251 145584251 T C SLC52A2 Missense_Mutation p.S335P 0.24 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 8 145638731 145638731 A G SLC39A4 Missense_Mutation p.V506A 0.14 deleterious(0) benign(0.087) TCGA-F7-A624-01 8 145756141 145756141 T C ARHGAP39 Missense_Mutation p.H1032R 0.12 tolerated(0.1) benign(0.004) TCGA-F7-A624-01 8 145771072 145771072 G A ARHGAP39 Silent p.I694I 0.50 TCGA-F7-A624-01 8 145772613 145772613 C T ARHGAP39 Silent p.R619R 0.18 TCGA-F7-A624-01 8 145773100 145773100 C T ARHGAP39 Missense_Mutation p.R457Q 0.24 tolerated(0.16) benign(0.013) TCGA-F7-A624-01 8 145806259 145806277 CGCCGCGGGCCGCCCGGCC - ARHGAP39 Frame_Shift_Del p.R155Sfs*5 0.14 TCGA-F7-A624-01 8 146157440 146157440 T C ZNF16 Missense_Mutation p.T245A 0.17 tolerated(1) benign(0.002) TCGA-F7-A624-01 8 17412171 17412171 A G SLC7A2 Silent p.T426T 0.12 TCGA-F7-A624-01 8 17447030 17447030 A G PDGFRL Missense_Mutation p.R37G 0.21 deleterious(0.04) benign(0.01) TCGA-F7-A624-01 8 17804848 17804848 G A PCM1 Missense_Mutation p.A313T 0.26 tolerated(0.09) probably_damaging(0.999) TCGA-F7-A624-01 8 17814832 17814832 T C PCM1 Missense_Mutation p.V569A 0.07 tolerated(0.34) benign(0.001) TCGA-F7-A624-01 8 1808161 1808161 A G ARHGEF10 Missense_Mutation p.T98A 0.06 tolerated_low_confidence(0.2) benign(0.017) TCGA-F7-A624-01 8 19316155 19316155 T C CSGALNACT1 Splice_Site p.X212_splice 0.24 TCGA-F7-A624-01 8 20073950 20073950 A G ATP6V1B2 Missense_Mutation p.T369A 0.11 deleterious(0) possibly_damaging(0.892) TCGA-F7-A624-01 8 21859720 21859720 C T XPO7 Silent p.P960P 0.16 TCGA-F7-A624-01 8 22785223 22785223 C T PEBP4 Missense_Mutation p.G2D 0.24 tolerated_low_confidence(0.15) benign(0.006) TCGA-F7-A624-01 8 22864404 22864404 T C RHOBTB2 Missense_Mutation p.F238L 0.09 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 8 22995432 22995432 T - TNFRSF10D Frame_Shift_Del p.K371Sfs*46 0.21 TCGA-F7-A624-01 8 23156368 23156368 C T LOXL2 Nonsense_Mutation p.W742* 0.12 TCGA-F7-A624-01 8 23225645 23225645 C T LOXL2 Missense_Mutation p.V74M 0.22 deleterious(0) possibly_damaging(0.886) TCGA-F7-A624-01 8 24193018 24193018 G A ADAM28 Missense_Mutation p.M477I 0.18 deleterious(0.02) possibly_damaging(0.457) TCGA-F7-A624-01 8 25198426 25198426 T C DOCK5 Silent p.F787F 0.24 TCGA-F7-A624-01 8 25258486 25258486 A G DOCK5 Silent p.K1610K 0.07 TCGA-F7-A624-01 8 25325857 25325857 A G CDCA2 Silent p.V221V 0.30 TCGA-F7-A624-01 8 25364677 25364677 G A CDCA2 Missense_Mutation p.R832H 0.17 tolerated(0.39) benign(0.035) TCGA-F7-A624-01 8 25365243 25365243 A C CDCA2 Silent p.R1021R 0.18 TCGA-F7-A624-01 8 25715941 25715941 G T EBF2 Silent p.T474T 0.06 TCGA-F7-A624-01 8 25718726 25718726 C T EBF2 Missense_Mutation p.R394Q 0.39 deleterious(0.01) possibly_damaging(0.76) TCGA-F7-A624-01 8 26220330 26220330 G A PPP2R2A Missense_Mutation p.M266I 0.16 deleterious(0.01) possibly_damaging(0.454) TCGA-F7-A624-01 8 26227699 26227699 A G PPP2R2A Missense_Mutation p.N382D 0.20 tolerated(0.42) benign(0.001) TCGA-F7-A624-01 8 26365167 26365167 C T PNMA2 3'UTR 0.37 TCGA-F7-A624-01 8 27288576 27288576 A G PTK2B Intron 0.18 TCGA-F7-A624-01 8 27321457 27321457 G A CHRNA2 Missense_Mutation p.T168M 0.21 deleterious(0) probably_damaging(0.934) TCGA-F7-A624-01 8 27327319 27327319 T A CHRNA2 Missense_Mutation p.I85F 0.16 deleterious(0.02) probably_damaging(1) TCGA-F7-A624-01 8 27348771 27348771 C T EPHX2 Silent p.L16L 0.13 TCGA-F7-A624-01 8 27668686 27668686 T C PBK Intron 0.20 TCGA-F7-A624-01 8 2813199 2813199 G A CSMD1 Silent p.C3302C 0.32 TCGA-F7-A624-01 8 28210819 28210819 G - ZNF395 Frame_Shift_Del p.S231Rfs*46 0.26 TCGA-F7-A624-01 8 28218619 28218619 C T ZNF395 Missense_Mutation p.R8H 0.33 deleterious(0) unknown(0) TCGA-F7-A624-01 8 28980935 28980935 C T KIF13B Missense_Mutation p.A1143T 0.41 deleterious(0.02) possibly_damaging(0.863) TCGA-F7-A624-01 8 29927269 29927269 C T TMEM66 Missense_Mutation p.G197R 0.36 tolerated(0.19) probably_damaging(0.955) TCGA-F7-A624-01 8 29931572 29931572 C T TMEM66 Splice_Site p.X35_splice 0.07 TCGA-F7-A624-01 8 30402247 30402247 T A RBPMS Intron 0.24 TCGA-F7-A624-01 8 30694437 30694437 A G TEX15 Silent p.P2738P 0.17 TCGA-F7-A624-01 8 30700428 30700428 T C TEX15 Missense_Mutation p.T2036A 0.21 deleterious(0) possibly_damaging(0.861) TCGA-F7-A624-01 8 3265497 3265497 G A CSMD1 Silent p.S665S 0.38 TCGA-F7-A624-01 8 33361334 33361334 G A TTI2 Silent p.H349H 0.28 TCGA-F7-A624-01 8 363094 363094 T C FBXO25 Silent p.G5G 0.17 TCGA-F7-A624-01 8 37632908 37632908 A G PROSC Missense_Mutation p.N169S 0.19 tolerated(0.66) benign(0.009) TCGA-F7-A624-01 8 37704452 37704452 A G BRF2 Silent p.T152T 0.24 TCGA-F7-A624-01 8 37967961 37967961 A G ASH2L Missense_Mutation p.T156A 0.21 deleterious(0.05) benign(0.377) TCGA-F7-A624-01 8 38066679 38066679 C T BAG4 Missense_Mutation p.A261V 0.25 tolerated(0.09) benign(0.012) TCGA-F7-A624-01 8 381399 381399 A - FBXO25 Frame_Shift_Del p.R67Gfs*44 0.18 TCGA-F7-A624-01 8 39080605 39080605 G A ADAM32 Missense_Mutation p.C458Y 0.39 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 8 39564395 39564395 T C ADAM18 Silent p.S663S 0.14 TCGA-F7-A624-01 8 39836655 39836655 T C IDO2 Missense_Mutation p.F102L 0.26 tolerated(0.15) benign(0.005) TCGA-F7-A624-01 8 41467239 41467239 A G AGPAT6 Missense_Mutation p.S101G 0.18 tolerated(0.47) benign(0.007) TCGA-F7-A624-01 8 41467252 41467252 A T AGPAT6 Missense_Mutation p.D105V 0.05 tolerated(0.09) benign(0.189) TCGA-F7-A624-01 8 41552141 41552141 G A ANK1 Missense_Mutation p.A1140V 0.19 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 8 41798870 41798870 A G KAT6A Silent p.S843S 0.23 TCGA-F7-A624-01 8 41839364 41839364 T C KAT6A Missense_Mutation p.K273R 0.23 probably_damaging(0.946) TCGA-F7-A624-01 8 43173691 43173691 A T POTEA RNA 0.08 TCGA-F7-A624-01 8 48736553 48736553 A G PRKDC Missense_Mutation p.Y2929H 0.08 probably_damaging(0.999) TCGA-F7-A624-01 8 48815311 48815311 A G PRKDC Silent p.C1029C 0.06 TCGA-F7-A624-01 8 48973433 48973433 C T UBE2V2 3'UTR 0.22 TCGA-F7-A624-01 8 53073971 53073971 T C ST18 Missense_Mutation p.T520A 0.14 tolerated(0.36) benign(0.012) TCGA-F7-A624-01 8 53586550 53586550 A G RB1CC1 Missense_Mutation p.V286A 0.24 tolerated(1) benign(0) TCGA-F7-A624-01 8 54147381 54147381 C T OPRK1 Nonsense_Mutation p.W183* 0.17 TCGA-F7-A624-01 8 54866827 54866827 G T RGS20 Missense_Mutation p.R312M 0.16 deleterious(0) probably_damaging(0.991) TCGA-F7-A624-01 8 54883013 54883013 C T TCEA1 Missense_Mutation p.R279H 0.41 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 8 55372595 55372595 T C SOX17 3'UTR 0.18 TCGA-F7-A624-01 8 55537721 55537721 A T RP1 Missense_Mutation p.N427Y 0.19 deleterious(0) possibly_damaging(0.629) TCGA-F7-A624-01 8 55542033 55542033 G A RP1 Missense_Mutation p.C1864Y 0.11 deleterious(0.03) possibly_damaging(0.906) TCGA-F7-A624-01 8 56015332 56015332 C T XKR4 Missense_Mutation p.A95V 0.39 tolerated(0.11) benign(0.001) TCGA-F7-A624-01 8 56698986 56698986 A G TGS1 Missense_Mutation p.T177A 0.19 tolerated(0.89) benign(0.001) TCGA-F7-A624-01 8 56711540 56711540 A G TGS1 Missense_Mutation p.H537R 0.26 tolerated(0.33) benign(0.007) TCGA-F7-A624-01 8 56711599 56711599 A - TGS1 Frame_Shift_Del p.G559Vfs*35 0.21 TCGA-F7-A624-01 8 56863054 56863054 A - LYN Frame_Shift_Del p.E110Kfs*15 0.32 TCGA-F7-A624-01 8 57358360 57358360 G A PENK Intron 0.41 TCGA-F7-A624-01 8 59409581 59409581 C T CYP7A1 Missense_Mutation p.A164T 0.06 tolerated(0.84) benign(0.001) TCGA-F7-A624-01 8 59410844 59410844 A G CYP7A1 Silent p.L89L 0.07 TCGA-F7-A624-01 8 59851885 59851885 T G TOX Silent p.T129T 0.10 TCGA-F7-A624-01 8 59851965 59851965 T C TOX Missense_Mutation p.N103D 0.16 deleterious(0.02) probably_damaging(0.931) TCGA-F7-A624-01 8 61777674 61777674 G A CHD7 Missense_Mutation p.A2726T 0.16 probably_damaging(0.981) TCGA-F7-A624-01 8 61778301 61778301 G A CHD7 Missense_Mutation p.E2935K 0.24 benign(0.121) TCGA-F7-A624-01 8 623865 623865 T - ERICH1 Frame_Shift_Del p.R163Gfs*3 0.32 TCGA-F7-A624-01 8 62546280 62546280 C T ASPH Missense_Mutation p.S299N 0.10 tolerated(0.45) benign(0.004) TCGA-F7-A624-01 8 63659497 63659497 G A NKAIN3 Missense_Mutation p.D94N 0.28 deleterious(0.02) probably_damaging(0.951) TCGA-F7-A624-01 8 65493811 65493811 G A BHLHE22 Missense_Mutation p.R155H 0.44 deleterious_low_confidence(0) benign(0.289) TCGA-F7-A624-01 8 67546882 67546882 T C VCPIP1 Missense_Mutation p.T1175A 0.19 tolerated_low_confidence(0.66) benign(0) TCGA-F7-A624-01 8 67578197 67578197 T C VCPIP1 Missense_Mutation p.T333A 0.19 tolerated(0.06) benign(0.071) TCGA-F7-A624-01 8 68089926 68089926 G A CSPP1 Missense_Mutation p.A1036T 0.17 tolerated(0.43) benign(0.058) TCGA-F7-A624-01 8 68113816 68113816 T C ARFGEF1 Missense_Mutation p.N1718S 0.18 deleterious(0) possibly_damaging(0.524) TCGA-F7-A624-01 8 68179674 68179674 A G ARFGEF1 Missense_Mutation p.F526L 0.28 deleterious(0.01) benign(0.439) TCGA-F7-A624-01 8 70594434 70594434 A G SLCO5A1 Silent p.G589G 0.33 TCGA-F7-A624-01 8 70744246 70744246 G - SLCO5A1 Frame_Shift_Del p.Y222Tfs*6 0.27 TCGA-F7-A624-01 8 71053559 71053559 A G NCOA2 Missense_Mutation p.V963A 0.20 tolerated(0.61) benign(0.002) TCGA-F7-A624-01 8 71060681 71060681 T A NCOA2 Missense_Mutation p.D811V 0.19 deleterious(0) probably_damaging(0.925) TCGA-F7-A624-01 8 71069425 71069425 C T NCOA2 Missense_Mutation p.G392E 0.19 deleterious(0.04) possibly_damaging(0.654) TCGA-F7-A624-01 8 72211461 72211461 G A EYA1 Missense_Mutation p.P216L 0.14 deleterious(0.01) benign(0.34) TCGA-F7-A624-01 8 72977772 72977772 T C TRPA1 Missense_Mutation p.I156V 0.24 tolerated(0.09) benign(0.014) TCGA-F7-A624-01 8 73937154 73937154 A G TERF1 Missense_Mutation p.K241R 0.09 tolerated(0.07) benign(0.36) TCGA-F7-A624-01 8 74868286 74868286 C T TCEB1 Missense_Mutation p.G3E 0.12 tolerated(0.25) benign(0.009) TCGA-F7-A624-01 8 75227813 75227813 T C JPH1 Missense_Mutation p.Y141C 0.21 deleterious(0.01) possibly_damaging(0.798) TCGA-F7-A624-01 8 75761352 75761352 G T PI15 Splice_Site p.X214_splice 0.21 TCGA-F7-A624-01 8 76452267 76452267 T G HNF4G Missense_Mutation p.Y14D 0.23 deleterious(0) possibly_damaging(0.806) TCGA-F7-A624-01 8 7718228 7718228 T - SPAG11A Frame_Shift_Del p.F94Sfs*63 0.19 TCGA-F7-A624-01 8 77618583 77618583 G A ZFHX4 Missense_Mutation p.G754R 0.34 probably_damaging(0.98) TCGA-F7-A624-01 8 77767872 77767872 G A ZFHX4 Silent p.A2905A 0.34 TCGA-F7-A624-01 8 79646036 79646036 T G IL7 Missense_Mutation p.K149T 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-F7-A624-01 8 81431473 81431473 A - ZBTB10 Frame_Shift_Del p.K777Nfs*13 0.24 TCGA-F7-A624-01 8 8176218 8176218 T C SGK223 Missense_Mutation p.T1223A 0.16 benign(0.032) TCGA-F7-A624-01 8 82606590 82606590 A G SLC10A5 Silent p.A206A 0.20 TCGA-F7-A624-01 8 86126186 86126186 T C E2F5 3'UTR 0.19 TCGA-F7-A624-01 8 8643376 8643376 C G MFHAS1 3'UTR 0.29 TCGA-F7-A624-01 8 87076207 87076207 T A PSKH2 Missense_Mutation p.N280I 0.16 deleterious(0.01) benign(0.071) TCGA-F7-A624-01 8 87229783 87229784 - A SLC7A13 Frame_Shift_Ins p.T366Hfs*28 0.31 TCGA-F7-A624-01 8 87474017 87474017 C A WWP1 Missense_Mutation p.Q871K 0.32 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 8 89053770 89053770 A G MMP16 Silent p.V581V 0.21 TCGA-F7-A624-01 8 90802310 90802310 G A RIPK2 Missense_Mutation p.R430H 0.39 tolerated(0.63) benign(0.002) TCGA-F7-A624-01 8 94745947 94745947 A G RBM12B Missense_Mutation p.F898L 0.16 deleterious(0.01) possibly_damaging(0.878) TCGA-F7-A624-01 8 94746046 94746046 A G RBM12B Missense_Mutation p.F865L 0.06 deleterious(0.04) possibly_damaging(0.878) TCGA-F7-A624-01 8 95470494 95470494 A G RAD54B Splice_Site p.X102_splice 0.16 TCGA-F7-A624-01 8 95500996 95500996 T G KIAA1429 Silent p.R1793R 0.18 TCGA-F7-A624-01 8 95507106 95507106 T C KIAA1429 Missense_Mutation p.I1541M 0.16 tolerated(0.13) benign(0.116) TCGA-F7-A624-01 8 95508100 95508100 T C KIAA1429 Missense_Mutation p.D1468G 0.23 deleterious(0) possibly_damaging(0.886) TCGA-F7-A624-01 8 95531563 95531563 A - KIAA1429 Frame_Shift_Del p.F721Lfs*11 0.24 TCGA-F7-A624-01 8 9567543 9567544 - A TNKS Frame_Shift_Ins p.N555Kfs*2 0.14 TCGA-F7-A624-01 8 95893861 95893861 T C CCNE2 Silent p.%3D 0.15 TCGA-F7-A624-01 8 96057819 96057819 A G NDUFAF6 Missense_Mutation p.E175G 0.14 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 8 99146774 99146774 T C POP1 Missense_Mutation p.Y300H 0.24 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 8 99158845 99158845 T C POP1 Silent p.C548C 0.25 TCGA-F7-A624-01 9 100074394 100074394 G T CCDC180 Splice_Site p.X131_splice 0.07 TCGA-F7-A624-01 9 100893279 100893279 G A CORO2A Silent p.P276P 0.11 TCGA-F7-A624-01 9 100971111 100971111 C T TBC1D2 Silent p.E663E 0.16 TCGA-F7-A624-01 9 101749621 101749621 G A COL15A1 Missense_Mutation p.E232K 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-F7-A624-01 9 102590878 102590878 G A NR4A3 Missense_Mutation p.G196D 0.38 tolerated(0.17) benign(0.033) TCGA-F7-A624-01 9 102744832 102744832 A G ERP44 3'UTR 0.64 TCGA-F7-A624-01 9 104152834 104152834 T C MRPL50 Missense_Mutation p.N131D 0.35 tolerated(0.19) benign(0.158) TCGA-F7-A624-01 9 104335655 104335655 G A GRIN3A Missense_Mutation p.P1050L 0.23 tolerated(0.35) benign(0.011) TCGA-F7-A624-01 9 104341488 104341488 T C GRIN3A Missense_Mutation p.H974R 0.22 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 9 107583768 107583768 A G ABCA1 Missense_Mutation p.F950L 0.10 tolerated(0.22) probably_damaging(0.986) TCGA-F7-A624-01 9 107594013 107594013 A G ABCA1 Silent p.G535G 0.24 TCGA-F7-A624-01 9 108123609 108123609 A G SLC44A1 Missense_Mutation p.T300A 0.23 deleterious(0.02) possibly_damaging(0.832) TCGA-F7-A624-01 9 108382270 108382270 T - FKTN Frame_Shift_Del p.F369Sfs*37 0.21 TCGA-F7-A624-01 9 110087223 110087223 G A RAD23B Missense_Mutation p.A352T 0.08 tolerated(0.21) benign(0.186) TCGA-F7-A624-01 9 111679848 111679848 G T IKBKAP Silent p.P281P 0.22 TCGA-F7-A624-01 9 112189315 112189315 T C PTPN3 Missense_Mutation p.T306A 0.29 deleterious(0) benign(0.279) TCGA-F7-A624-01 9 113006438 113006438 T C TXN Silent p.%3D 0.16 TCGA-F7-A624-01 9 113189972 113189972 A G SVEP1 Silent p.C1958C 0.29 TCGA-F7-A624-01 9 114089977 114089977 A G OR2K2 Missense_Mutation p.V246A 0.26 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 9 115422041 115422041 G A KIAA1958 Missense_Mutation p.G615R 0.25 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 9 116276863 116276863 G A RGS3 Missense_Mutation p.A535T 0.24 tolerated(0.34) benign(0.002) TCGA-F7-A624-01 9 116931125 116931125 G A COL27A1 Silent p.P430P 0.30 TCGA-F7-A624-01 9 117095380 117095382 AGA - ORM2 In_Frame_Del p.K192del 0.08 TCGA-F7-A624-01 9 117124719 117124719 G T AKNA Missense_Mutation p.S628Y 0.24 deleterious(0) possibly_damaging(0.842) TCGA-F7-A624-01 9 117266652 117266652 G A DFNB31 Missense_Mutation p.R144W 0.29 deleterious(0) probably_damaging(0.978) TCGA-F7-A624-01 9 117822164 117822164 A G TNC Missense_Mutation p.V1384A 0.39 tolerated(0.64) benign(0.001) TCGA-F7-A624-01 9 117849399 117849399 T C TNC Missense_Mutation p.Q204R 0.25 tolerated(0.05) benign(0.012) TCGA-F7-A624-01 9 118265 118265 C T FOXD4 5'UTR 0.25 TCGA-F7-A624-01 9 119461806 119461806 T C TRIM32 Silent p.S595S 0.23 TCGA-F7-A624-01 9 120474737 120474737 G A TLR4 Missense_Mutation p.G111R 0.23 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 9 120476615 120476615 G A TLR4 Missense_Mutation p.V737M 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-F7-A624-01 9 123367647 123367647 G A MEGF9 Missense_Mutation p.R544W 0.22 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 9 123880772 123880772 A T CNTRL Missense_Mutation p.D535V 0.21 benign(0.382) TCGA-F7-A624-01 9 123912683 123912683 G A CNTRL Silent p.G1295G 0.26 TCGA-F7-A624-01 9 123921184 123921184 A - CNTRL Frame_Shift_Del p.K1607Rfs*22 0.18 TCGA-F7-A624-01 9 125486951 125486951 G T OR1L4 Missense_Mutation p.R228I 0.12 deleterious(0) possibly_damaging(0.493) TCGA-F7-A624-01 9 125512809 125512809 G T OR1L6 Missense_Mutation p.R228I 0.38 deleterious(0) possibly_damaging(0.616) TCGA-F7-A624-01 9 125681684 125681684 T C ZBTB26 Missense_Mutation p.D177G 0.22 tolerated(0.1) benign(0.206) TCGA-F7-A624-01 9 125682060 125682060 C T ZBTB26 Missense_Mutation p.A52T 0.24 deleterious(0.03) probably_damaging(0.993) TCGA-F7-A624-01 9 125890530 125890530 T A STRBP Silent p.G635G 0.27 TCGA-F7-A624-01 9 126133465 126133465 G A CRB2 Missense_Mutation p.A682T 0.23 tolerated(0.31) possibly_damaging(0.499) TCGA-F7-A624-01 9 126143690 126143690 C - DENND1A 3'UTR 0.22 TCGA-F7-A624-01 9 127999357 127999357 C T HSPA5 Silent p.G493G 0.23 TCGA-F7-A624-01 9 129458779 129458779 C T LMX1B 3'UTR 0.29 TCGA-F7-A624-01 9 130151298 130151298 C A GARNL3 Silent p.P881P 0.28 TCGA-F7-A624-01 9 130206653 130206653 A G ZNF79 Missense_Mutation p.E225G 0.23 deleterious(0) possibly_damaging(0.738) TCGA-F7-A624-01 9 130511746 130511746 C T SH2D3C Missense_Mutation p.A295T 0.20 deleterious(0.04) probably_damaging(1) TCGA-F7-A624-01 9 130579513 130579514 - C ENG Intron 0.23 TCGA-F7-A624-01 9 131038472 131038472 C T SWI5 Silent p.C16C 0.26 TCGA-F7-A624-01 9 131287588 131287588 C T GLE1 Nonsense_Mutation p.Q339* 0.14 TCGA-F7-A624-01 9 131476394 131476394 C T PKN3 Missense_Mutation p.R436C 0.20 deleterious(0.02) benign(0.006) TCGA-F7-A624-01 9 131669814 131669814 A G LRRC8A Missense_Mutation p.Y124C 0.21 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 9 131939288 131939288 C A IER5L Silent p.P348P 0.21 TCGA-F7-A624-01 9 132566419 132566419 G A TOR1B Silent p.A89A 0.35 TCGA-F7-A624-01 9 133729579 133729579 T C ABL1 Missense_Mutation p.Y89H 0.27 deleterious(0.03) probably_damaging(1) TCGA-F7-A624-01 9 133748417 133748417 A G ABL1 Missense_Mutation p.I379V 0.28 deleterious(0.03) probably_damaging(0.981) TCGA-F7-A624-01 9 134151631 134151631 C T FAM78A 5'UTR 0.29 TCGA-F7-A624-01 9 135277541 135277541 T - TTF1 Frame_Shift_Del p.K223Rfs*45 0.22 TCGA-F7-A624-01 9 135759426 135759426 A G C9orf9 Missense_Mutation p.H31R 0.21 tolerated(1) benign(0.007) TCGA-F7-A624-01 9 135771891 135771891 T C TSC1 Missense_Mutation p.T1076A 0.22 tolerated(0.22) benign(0.001) TCGA-F7-A624-01 9 135786806 135786808 GAG - TSC1 Intron 0.28 TCGA-F7-A624-01 9 136501547 136501547 A T DBH Silent p.A18A 0.20 TCGA-F7-A624-01 9 136573485 136573485 G A SARDH Missense_Mutation p.A465V 0.09 tolerated(0.15) benign(0.107) TCGA-F7-A624-01 9 136905384 136905384 G C BRD3 Missense_Mutation p.A472G 0.17 deleterious(0.01) probably_damaging(0.935) TCGA-F7-A624-01 9 136907048 136907048 T C BRD3 Missense_Mutation p.K414R 0.15 deleterious(0.04) possibly_damaging(0.824) TCGA-F7-A624-01 9 137593114 137593114 C A COL5A1 Missense_Mutation p.P197T 0.32 possibly_damaging(0.59) TCGA-F7-A624-01 9 137642390 137642390 C - COL5A1 Frame_Shift_Del p.P501Lfs*57 0.23 TCGA-F7-A624-01 9 138378335 138378335 G A PPP1R26 Missense_Mutation p.R660H 0.13 tolerated(0.6) benign(0.001) TCGA-F7-A624-01 9 138667192 138667192 C T KCNT1 Silent p.I760I 0.27 TCGA-F7-A624-01 9 139113665 139113665 A G QSOX2 Silent p.N266N 0.10 TCGA-F7-A624-01 9 139371345 139371345 C T SEC16A Silent p.V241V 0.29 TCGA-F7-A624-01 9 139395187 139395187 G A NOTCH1 Silent p.G1917G 0.26 TCGA-F7-A624-01 9 139617613 139617613 T C FAM69B Missense_Mutation p.L228P 0.27 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 9 139760730 139760730 C T EDF1 5'UTR 0.23 TCGA-F7-A624-01 9 139935003 139935003 G A NPDC1 Missense_Mutation p.A224V 0.24 tolerated(0.51) benign(0.265) TCGA-F7-A624-01 9 140705943 140705943 T C EHMT1 Missense_Mutation p.F915L 0.30 tolerated(0.15) benign(0.401) TCGA-F7-A624-01 9 140706049 140706049 A G EHMT1 Missense_Mutation p.N950S 0.19 tolerated(0.16) benign(0.37) TCGA-F7-A624-01 9 140729234 140729234 T C EHMT1 Silent p.Y1242Y 0.24 TCGA-F7-A624-01 9 140811791 140811791 T C CACNA1B Missense_Mutation p.F292L 0.25 tolerated(0.32) benign(0.035) TCGA-F7-A624-01 9 140901252 140901252 T C CACNA1B Missense_Mutation p.Y670H 0.13 deleterious(0) possibly_damaging(0.486) TCGA-F7-A624-01 9 140911612 140911612 T C CACNA1B Intron 0.09 TCGA-F7-A624-01 9 140938227 140938227 T C CACNA1B Silent p.S1096S 0.07 TCGA-F7-A624-01 9 14150259 14150259 T C NFIB Missense_Mutation p.I231V 0.23 tolerated(1) benign(0.003) TCGA-F7-A624-01 9 14737376 14737376 C A FREM1 3'UTR 0.14 TCGA-F7-A624-01 9 15459986 15459986 A - SNAPC3 3'UTR 0.35 TCGA-F7-A624-01 9 17340896 17340896 C T CNTLN Silent p.N572N 0.12 TCGA-F7-A624-01 9 17462981 17462983 AAG - CNTLN In_Frame_Del p.E1127del 0.15 TCGA-F7-A624-01 9 18892440 18892440 A G ADAMTSL1 Missense_Mutation p.Q1566R 0.15 tolerated(0.17) possibly_damaging(0.631) TCGA-F7-A624-01 9 19076689 19076689 A G HAUS6 Missense_Mutation p.L402S 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-F7-A624-01 9 19118342 19118342 T C PLIN2 Missense_Mutation p.T297A 0.25 tolerated(0.64) benign(0.002) TCGA-F7-A624-01 9 19296163 19296164 - T DENND4C Frame_Shift_Ins p.E323* 0.17 TCGA-F7-A624-01 9 19332077 19332077 T C DENND4C Silent p.C785C 0.29 TCGA-F7-A624-01 9 19346377 19346377 A G DENND4C Missense_Mutation p.T1155A 0.14 tolerated(0.65) benign(0.001) TCGA-F7-A624-01 9 20758147 20758147 T - FOCAD Frame_Shift_Del p.L152Cfs*4 0.20 TCGA-F7-A624-01 9 20781876 20781876 T C FOCAD Missense_Mutation p.L382P 0.30 tolerated(0.32) benign(0.445) TCGA-F7-A624-01 9 20951005 20951005 T C FOCAD Missense_Mutation p.V1320A 0.22 tolerated(0.2) benign(0.032) TCGA-F7-A624-01 9 21187458 21187458 C T IFNA4 Missense_Mutation p.D25N 0.24 deleterious(0.04) benign(0.013) TCGA-F7-A624-01 9 21207127 21207127 G C IFNA10 5'UTR 0.18 TCGA-F7-A624-01 9 27217744 27217744 C T TEK Missense_Mutation p.T1017I 0.20 deleterious(0) probably_damaging(0.996) TCGA-F7-A624-01 9 33167226 33167226 G T B4GALT1 5'UTR 0.47 TCGA-F7-A624-01 9 33255240 33255240 T C BAG1 Missense_Mutation p.T339A 0.27 deleterious(0.05) benign(0.156) TCGA-F7-A624-01 9 33933540 33933540 T C UBAP2 Missense_Mutation p.T686A 0.27 tolerated(1) benign(0.006) TCGA-F7-A624-01 9 34371428 34371428 A G KIAA1161 Missense_Mutation p.V471A 0.27 tolerated(0.47) possibly_damaging(0.78) TCGA-F7-A624-01 9 34660857 34660857 G A IL11RA Silent p.R392R 0.20 TCGA-F7-A624-01 9 35106373 35106373 C T FAM214B Missense_Mutation p.G365D 0.17 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 9 35376184 35376184 G A UNC13B Missense_Mutation p.E510K 0.22 deleterious(0) probably_damaging(0.978) TCGA-F7-A624-01 9 35548395 35548395 A G RUSC2 Missense_Mutation p.H626R 0.22 tolerated(0.42) benign(0) TCGA-F7-A624-01 9 35555441 35555441 C T RUSC2 Missense_Mutation p.S800L 0.29 deleterious(0.03) probably_damaging(0.986) TCGA-F7-A624-01 9 35706785 35706785 G A TLN1 Missense_Mutation p.R1690C 0.26 deleterious(0) probably_damaging(0.988) TCGA-F7-A624-01 9 35720085 35720085 T C TLN1 Missense_Mutation p.Q472R 0.27 deleterious(0.02) benign(0.039) TCGA-F7-A624-01 9 35737315 35737315 G A GBA2 Missense_Mutation p.R879W 0.19 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 9 35753693 35753693 G A MSMP Missense_Mutation p.T68I 0.20 tolerated(0.12) probably_damaging(0.997) TCGA-F7-A624-01 9 35806427 35806427 G A NPR2 Missense_Mutation p.R804H 0.25 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 9 35870045 35870045 C A OR13J1 Silent p.T118T 0.25 TCGA-F7-A624-01 9 36169867 36169867 T C CCIN Missense_Mutation p.F123S 0.06 deleterious(0) probably_damaging(0.932) TCGA-F7-A624-01 9 37780617 37780617 T C EXOSC3 3'UTR 0.20 TCGA-F7-A624-01 9 38016099 38016099 G T SHB Silent p.P249P 0.26 TCGA-F7-A624-01 9 38411462 38411462 C T IGFBPL1 Missense_Mutation p.V258M 0.19 deleterious(0) probably_damaging(0.984) TCGA-F7-A624-01 9 43630657 43630657 C T SPATA31A6 Silent p.S15S 0.16 TCGA-F7-A624-01 9 4625426 4625426 A G SPATA6L Silent p.Y132Y 0.06 TCGA-F7-A624-01 9 4826916 4826916 T C RCL1 Silent p.C89C 0.09 TCGA-F7-A624-01 9 5908736 5908736 G A MLANA 3'UTR 0.21 TCGA-F7-A624-01 9 5920253 5920253 T C KIAA2026 Missense_Mutation p.T1915A 0.04 tolerated(0.47) benign(0.004) TCGA-F7-A624-01 9 5969030 5969030 G A KIAA2026 Missense_Mutation p.P401S 0.32 tolerated(0.11) benign(0.132) TCGA-F7-A624-01 9 65506692 65506692 A G SPATA31A7 Missense_Mutation p.S290P 0.29 tolerated(0.31) benign(0.002) TCGA-F7-A624-01 9 6588634 6588634 T C GLDC Missense_Mutation p.H550R 0.30 tolerated(0.12) probably_damaging(0.996) TCGA-F7-A624-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.10 deleterious(0.01) possibly_damaging(0.573) TCGA-F7-A624-01 9 712027 712027 T A KANK1 Missense_Mutation p.S421T 0.25 tolerated(0.61) benign(0.002) TCGA-F7-A624-01 9 71395719 71395719 G A FAM122A Silent p.Q213Q 0.16 TCGA-F7-A624-01 9 71986447 71986447 T C FAM189A2 Silent p.C15C 0.05 TCGA-F7-A624-01 9 72067080 72067080 G A APBA1 Silent p.N642N 0.23 TCGA-F7-A624-01 9 72659108 72659108 G A MAMDC2 5'UTR 0.21 TCGA-F7-A624-01 9 73461507 73461507 A G TRPM3 Missense_Mutation p.Y155H 0.22 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 9 74360281 74360281 T C TMEM2 Silent p.T229T 0.05 TCGA-F7-A624-01 9 77562960 77562960 T C C9orf40 3'UTR 0.25 TCGA-F7-A624-01 9 77599851 77599851 A G C9orf41 Missense_Mutation p.V367A 0.12 tolerated(0.25) benign(0.158) TCGA-F7-A624-01 9 79322842 79322842 T C PRUNE2 Missense_Mutation p.M1450V 0.31 tolerated(0.66) benign(0.001) TCGA-F7-A624-01 9 79323182 79323182 C A PRUNE2 Missense_Mutation p.R1336S 0.20 tolerated(0.29) benign(0.018) TCGA-F7-A624-01 9 82187608 82187608 G C TLE4 5'UTR 0.13 TCGA-F7-A624-01 9 8331712 8331712 G A PTPRD Nonsense_Mutation p.Q1802* 0.29 TCGA-F7-A624-01 9 84205764 84205764 G A TLE1 Silent p.D595D 0.26 TCGA-F7-A624-01 9 84531732 84531732 T C SPATA31D5P RNA 0.24 TCGA-F7-A624-01 9 84606125 84606125 T C SPATA31D1 Missense_Mutation p.L247P 0.22 tolerated(0.33) benign(0.005) TCGA-F7-A624-01 9 86474116 86474116 G C KIF27 Missense_Mutation p.H1035Q 0.17 tolerated(0.61) benign(0.003) TCGA-F7-A624-01 9 86523470 86523470 T - KIF27 Frame_Shift_Del p.V133Yfs*4 0.24 TCGA-F7-A624-01 9 87636213 87636213 C T NTRK2 Missense_Mutation p.T793M 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-F7-A624-01 9 88633297 88633297 A G NAA35 Missense_Mutation p.Y634C 0.23 deleterious(0) probably_damaging(0.984) TCGA-F7-A624-01 9 90322130 90322130 G A DAPK1 Missense_Mutation p.E1382K 0.19 deleterious(0.03) possibly_damaging(0.903) TCGA-F7-A624-01 9 90501484 90501484 C T SPATA31E1 Silent p.T694T 0.28 TCGA-F7-A624-01 9 91930190 91930190 T C CKS2 Silent p.V55V 0.29 TCGA-F7-A624-01 9 92002325 92002325 A G SEMA4D Missense_Mutation p.Y436H 0.19 tolerated(0.1) possibly_damaging(0.458) TCGA-F7-A624-01 9 94794746 94794746 C T SPTLC1 3'UTR 0.18 TCGA-F7-A624-01 9 95076818 95076818 T C NOL8 Missense_Mutation p.S697G 0.18 tolerated(0.64) benign(0.002) TCGA-F7-A624-01 9 95177629 95177629 T C OMD Missense_Mutation p.I357M 0.09 tolerated(0.11) benign(0.026) TCGA-F7-A624-01 9 95237107 95237107 C T ASPN Missense_Mutation p.A25T 0.23 tolerated(0.57) benign(0.001) TCGA-F7-A624-01 9 95527004 95527004 T A BICD2 Missense_Mutation p.E8V 0.22 tolerated_low_confidence(0.16) benign(0.222) TCGA-F7-A624-01 9 95608465 95608465 T C ZNF484 3'UTR 0.25 TCGA-F7-A624-01 9 95738900 95738900 C - FGD3 Frame_Shift_Del p.Q123Rfs*51 0.30 TCGA-F7-A624-01 9 96024279 96024279 C T WNK2 Missense_Mutation p.P1084S 0.10 unknown(0) TCGA-F7-A624-01 9 96326712 96326712 A T FAM120A Missense_Mutation p.N1083Y 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.902) TCGA-F7-A624-01 9 96339120 96339120 A G PHF2 Missense_Mutation p.E22G 0.35 deleterious(0) unknown(0) TCGA-F7-A624-01 9 96437210 96437210 T C PHF2 Silent p.V876V 0.22 TCGA-F7-A624-01 9 98774880 98774880 T - ERCC6L2 Frame_Shift_Del p.F323Lfs*30 0.15 TCGA-F7-A624-01 X 100486596 100486596 T C DRP2 5'UTR 0.45 TCGA-F7-A624-01 X 101615434 101615434 G T NXF2B 3'UTR 0.48 TCGA-F7-A624-01 X 102332636 102332636 G A NXF3 Missense_Mutation p.T497I 0.49 tolerated(0.07) benign(0.005) TCGA-F7-A624-01 X 107449632 107449632 T C COL4A6 Intron 0.54 TCGA-F7-A624-01 X 108636205 108636205 A G GUCY2F Missense_Mutation p.L835S 0.18 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 X 11682447 11682447 C T ARHGAP6 Missense_Mutation p.A168T 0.46 tolerated_low_confidence(1) benign(0.001) TCGA-F7-A624-01 X 118771104 118771104 A G SEPT6 Missense_Mutation p.V281A 0.37 deleterious(0.01) benign(0.323) TCGA-F7-A624-01 X 120182040 120182040 A T GLUD2 Missense_Mutation p.M168L 0.45 deleterious(0) possibly_damaging(0.475) TCGA-F7-A624-01 X 124029909 124029909 A G TENM1 Silent p.S133S 0.42 TCGA-F7-A624-01 X 127185998 127185998 T C ACTRT1 Missense_Mutation p.Y63C 0.47 tolerated(0.15) possibly_damaging(0.456) TCGA-F7-A624-01 X 128927038 128927038 T C SASH3 Missense_Mutation p.L292P 0.60 deleterious(0.02) probably_damaging(0.969) TCGA-F7-A624-01 X 12904439 12904439 C T TLR7 Missense_Mutation p.A271V 0.48 tolerated(0.22) benign(0) TCGA-F7-A624-01 X 129059902 129059902 A G UTP14A Missense_Mutation p.E586G 0.59 deleterious(0.03) benign(0.112) TCGA-F7-A624-01 X 12939677 12939677 A G TLR8 Missense_Mutation p.T840A 0.06 tolerated(0.15) benign(0.001) TCGA-F7-A624-01 X 131526279 131526279 G A MBNL3 Silent p.L142L 0.47 TCGA-F7-A624-01 X 134428082 134428082 T C ZNF75D 5'UTR 0.44 TCGA-F7-A624-01 X 134481037 134481037 G - ZNF449 5'UTR 0.31 TCGA-F7-A624-01 X 135405143 135405143 G T GPR112 Missense_Mutation p.A93S 0.52 tolerated(0.11) possibly_damaging(0.78) TCGA-F7-A624-01 X 135618205 135618205 T A VGLL1 Missense_Mutation p.I9N 0.10 tolerated(0.16) benign(0.124) TCGA-F7-A624-01 X 149839965 149839965 G A MTM1 Missense_Mutation p.R570Q 0.63 tolerated(0.21) benign(0.007) TCGA-F7-A624-01 X 151128335 151128335 T C GABRE Missense_Mutation p.T254A 0.49 deleterious(0) benign(0.22) TCGA-F7-A624-01 X 151900289 151900289 C G MAGEA12 Missense_Mutation p.R171P 0.52 tolerated(1) benign(0) TCGA-F7-A624-01 X 152159713 152159713 A T PNMA5 Missense_Mutation p.S144T 0.13 tolerated(0.67) benign(0.001) TCGA-F7-A624-01 X 152226134 152226134 G A PNMA3 Missense_Mutation p.G241E 0.48 deleterious(0) probably_damaging(0.998) TCGA-F7-A624-01 X 152610251 152610251 A G ZNF275 Intron 0.47 TCGA-F7-A624-01 X 152939660 152939660 C T PNCK 5'UTR 0.41 TCGA-F7-A624-01 X 153001628 153001628 A G ABCD1 Missense_Mutation p.T382A 0.52 deleterious(0.02) benign(0.049) TCGA-F7-A624-01 X 153039011 153039011 A T PLXNB3 Missense_Mutation p.D1064V 0.50 deleterious(0) probably_damaging(0.961) TCGA-F7-A624-01 X 153051493 153051493 T C IDH3G Intron 0.64 TCGA-F7-A624-01 X 153205600 153205600 C T RENBP Silent p.V344V 0.48 TCGA-F7-A624-01 X 153587512 153587512 G C FLNA Missense_Mutation p.F1438L 0.54 deleterious(0.03) probably_damaging(0.973) TCGA-F7-A624-01 X 153662660 153662660 C T ATP6AP1 Missense_Mutation p.A264V 0.21 tolerated(0.2) benign(0.009) TCGA-F7-A624-01 X 153713958 153713958 G A UBL4A Silent p.L132L 0.57 TCGA-F7-A624-01 X 154305515 154305515 G A BRCC3 Missense_Mutation p.R89Q 0.42 deleterious(0.01) benign(0.354) TCGA-F7-A624-01 X 155233458 155233458 A G IL9R Missense_Mutation p.H124R 0.19 tolerated(0.94) benign(0.002) TCGA-F7-A624-01 X 17744917 17744917 G A NHS Silent p.T876T 0.41 TCGA-F7-A624-01 X 17746019 17746019 A - NHS Frame_Shift_Del p.N1245Tfs*24 0.36 TCGA-F7-A624-01 X 18183121 18183121 G A BEND2 3'UTR 0.07 TCGA-F7-A624-01 X 18660262 18660262 G A RS1 Silent p.N179N 0.11 TCGA-F7-A624-01 X 20134903 20134903 G A MAP7D2 Missense_Mutation p.A32V 0.36 tolerated_low_confidence(0.24) benign(0.2) TCGA-F7-A624-01 X 21674052 21674052 C T KLHL34 Missense_Mutation p.A619T 0.67 tolerated(0.18) benign(0.082) TCGA-F7-A624-01 X 22291692 22291692 A G ZNF645 Missense_Mutation p.H195R 0.07 tolerated(0.17) benign(0.005) TCGA-F7-A624-01 X 23723708 23723708 G A ACOT9 Missense_Mutation p.R313W 0.47 deleterious(0) probably_damaging(0.999) TCGA-F7-A624-01 X 2408097 2408097 C T ZBED1 Missense_Mutation p.A222T 0.26 tolerated_low_confidence(0.59) benign(0.001) TCGA-F7-A624-01 X 26212473 26212473 C T MAGEB6 Silent p.A170A 0.43 TCGA-F7-A624-01 X 29301191 29301191 T C IL1RAPL1 Silent p.S73S 0.32 TCGA-F7-A624-01 X 30326381 30326381 T C NR0B1 Missense_Mutation p.K367R 0.12 tolerated(0.2) benign(0.327) TCGA-F7-A624-01 X 32235180 32235180 C T DMD Silent p.G2097G 0.56 TCGA-F7-A624-01 X 34962126 34962126 G A FAM47B Missense_Mutation p.R393Q 0.39 tolerated(0.72) benign(0.01) TCGA-F7-A624-01 X 3592653 3592653 C T PRKX Silent p.P107P 0.45 TCGA-F7-A624-01 X 37027420 37027420 T C FAM47C Missense_Mutation p.S313P 0.57 deleterious(0) benign(0.005) TCGA-F7-A624-01 X 37587562 37587562 T - XK Frame_Shift_Del p.C396Afs*13 0.38 TCGA-F7-A624-01 X 38129023 38129023 C T TM4SF2 Intron 0.50 TCGA-F7-A624-01 X 38664131 38664131 C T MID1IP1 5'UTR 0.39 TCGA-F7-A624-01 X 41390337 41390337 T G CASK Missense_Mutation p.M810L 0.14 tolerated(0.13) benign(0.263) TCGA-F7-A624-01 X 44969463 44969463 A G KDM6A Missense_Mutation p.D1382G 0.43 deleterious(0) possibly_damaging(0.533) TCGA-F7-A624-01 X 46434414 46434414 G A CHST7 Missense_Mutation p.E350K 0.23 tolerated(0.35) possibly_damaging(0.731) TCGA-F7-A624-01 X 47034443 47034443 C T RBM10 Silent p.V176V 0.44 TCGA-F7-A624-01 X 47308126 47308126 A G ZNF41 Missense_Mutation p.I348T 0.30 tolerated(0.94) possibly_damaging(0.695) TCGA-F7-A624-01 X 49840518 49840518 G - CLCN5 Frame_Shift_Del p.G163Dfs*45 0.33 TCGA-F7-A624-01 X 49957582 49957582 T C AKAP4 Silent p.K594K 0.54 TCGA-F7-A624-01 X 50122668 50122668 T C DGKK RNA 0.38 TCGA-F7-A624-01 X 53105860 53105860 C T GPR173 Silent p.S19S 0.44 TCGA-F7-A624-01 X 55041391 55041391 A G ALAS2 Missense_Mutation p.M409T 0.38 tolerated(1) benign(0.003) TCGA-F7-A624-01 X 62885895 62885895 G A ARHGEF9 Silent p.G309G 0.47 TCGA-F7-A624-01 X 63548661 63548661 T C MTMR8 Missense_Mutation p.Y491C 0.45 tolerated(0.2) benign(0) TCGA-F7-A624-01 X 67316710 67316710 A G OPHN1 Splice_Site p.X562_splice 0.08 TCGA-F7-A624-01 X 70349193 70349193 C T MED12 Missense_Mutation p.S1202F 0.46 probably_damaging(0.995) TCGA-F7-A624-01 X 70464697 70464697 G A ZMYM3 Silent p.G1018G 0.67 TCGA-F7-A624-01 X 73045191 73045191 T - XIST RNA 0.33 TCGA-F7-A624-01 X 73065129 73065129 A G XIST RNA 0.52 TCGA-F7-A624-01 X 73066398 73066398 G T XIST RNA 0.49 TCGA-F7-A624-01 X 75649387 75649387 C T MAGEE1 Missense_Mutation p.S355F 0.36 tolerated_low_confidence(0.07) possibly_damaging(0.543) TCGA-F7-A624-01 X 76763826 76763826 A G ATRX 3'UTR 0.18 TCGA-F7-A624-01 X 78426811 78426811 T C GPR174 Missense_Mutation p.Y103H 0.48 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 X 79286155 79286155 C T TBX22 Missense_Mutation p.P370S 0.39 deleterious(0) probably_damaging(1) TCGA-F7-A624-01 X 91090570 91090570 G A PCDH11X Missense_Mutation p.A23T 0.42 deleterious(0) probably_damaging(0.93) TCGA-F7-A624-01 X 91133579 91133579 A G PCDH11X Silent p.T780T 0.49 TCGA-F7-A624-01 X 92927642 92927642 T C NAP1L3 Missense_Mutation p.K221R 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-F7-A624-01 X 96136711 96136711 C T DIAPH2 Missense_Mutation p.P194L 0.44 deleterious(0) unknown(0) TCGA-F7-A624-01 X 99551151 99551151 A G PCDH19 3'UTR 0.26 TCGA-F7-A624-01 X 99662682 99662682 T C PCDH19 Missense_Mutation p.D305G 0.51 deleterious(0) probably_damaging(0.997) TCGA-F7-A624-01 X 99662998 99662998 T C PCDH19 Missense_Mutation p.T200A 0.44 tolerated(0.14) possibly_damaging(0.81) TCGA-F7-A624-01 Y 15016853 15016853 T C DDX3Y Silent p.S2S 0.52 TCGA-H7-7774-01 10 106976783 106976783 C G SORCS3 Missense_Mutation p.I879M 0.27 deleterious(0) probably_damaging(0.997) TCGA-H7-7774-01 10 117884986 117884986 C T GFRA1 Silent p.S172S 0.30 TCGA-H7-7774-01 10 31133973 31133973 C G ZNF438 Missense_Mutation p.E802Q 0.04 deleterious(0.03) possibly_damaging(0.863) TCGA-H7-7774-01 10 37506697 37506697 G C ANKRD30A Missense_Mutation p.G997A 0.07 tolerated(0.07) probably_damaging(0.91) TCGA-H7-7774-01 10 45941026 45941026 G A ALOX5 Missense_Mutation p.R639H 0.10 deleterious(0.01) benign(0.025) TCGA-H7-7774-01 10 67829147 67829147 A T CTNNA3 Missense_Mutation p.I693K 0.27 tolerated(1) unknown(0) TCGA-H7-7774-01 10 88232379 88232379 T A WAPAL Missense_Mutation p.E628V 0.18 deleterious(0) probably_damaging(0.994) TCGA-H7-7774-01 10 99211482 99211482 G A ZDHHC16 Missense_Mutation p.R17H 0.40 tolerated_low_confidence(0.1) benign(0.002) TCGA-H7-7774-01 11 107925516 107925516 A T CUL5 Missense_Mutation p.K232N 0.35 tolerated(0.17) possibly_damaging(0.803) TCGA-H7-7774-01 11 123848324 123848324 G A OR10S1 Silent p.F25F 0.07 TCGA-H7-7774-01 11 129746654 129746654 C T NFRKB Missense_Mutation p.R595H 0.18 deleterious(0.04) unknown(0) TCGA-H7-7774-01 11 14526746 14526746 C T PSMA1 Missense_Mutation p.E268K 0.26 deleterious(0) possibly_damaging(0.801) TCGA-H7-7774-01 11 18195639 18195639 G C MRGPRX4 Missense_Mutation p.R279T 0.16 deleterious(0) possibly_damaging(0.481) TCGA-H7-7774-01 11 18735568 18735568 G T IGSF22 Nonsense_Mutation p.Y642* 0.25 TCGA-H7-7774-01 11 22257816 22257816 C A ANO5 Silent p.L252L 0.22 TCGA-H7-7774-01 11 33083210 33083210 G A TCP11L1 Missense_Mutation p.V304I 0.22 tolerated(0.11) benign(0.098) TCGA-H7-7774-01 11 55371357 55371357 G A OR4C11 Missense_Mutation p.P165S 0.53 deleterious(0.02) possibly_damaging(0.841) TCGA-H7-7774-01 11 55541352 55541352 G T OR5D13 Missense_Mutation p.V147L 0.10 deleterious(0.03) possibly_damaging(0.46) TCGA-H7-7774-01 11 66617416 66617416 G A PC Missense_Mutation p.R964C 0.24 deleterious(0) probably_damaging(0.999) TCGA-H7-7774-01 11 74800175 74800175 G C OR2AT4 Missense_Mutation p.S195C 0.08 deleterious(0) probably_damaging(0.986) TCGA-H7-7774-01 12 26493141 26493141 C T ITPR2 Missense_Mutation p.V2660I 0.34 tolerated(0.13) benign(0.213) TCGA-H7-7774-01 12 26572049 26572049 T C ITPR2 Missense_Mutation p.Y2348C 0.25 deleterious(0) probably_damaging(0.993) TCGA-H7-7774-01 12 27826759 27826759 G T PPFIBP1 Missense_Mutation p.G477V 0.19 tolerated(0.27) benign(0.004) TCGA-H7-7774-01 12 34179307 34179307 C T ALG10 Silent p.Y293Y 0.27 TCGA-H7-7774-01 12 52913978 52913979 - GG KRT5 Frame_Shift_Ins p.V35Pfs*117 0.27 TCGA-H7-7774-01 12 53473132 53473132 G A SPRYD3 5'UTR 0.32 TCGA-H7-7774-01 12 55794794 55794794 G A OR6C65 Missense_Mutation p.G161D 0.31 deleterious_low_confidence(0.04) probably_damaging(0.934) TCGA-H7-7774-01 12 6839587 6839587 G A COPS7A Missense_Mutation p.V184M 0.05 tolerated(0.11) possibly_damaging(0.611) TCGA-H7-7774-01 13 28498614 28498614 G A PDX1 Missense_Mutation p.G210S 0.29 tolerated(0.48) benign(0.004) TCGA-H7-7774-01 13 73349468 73349468 C G DIS3 Missense_Mutation p.D290H 0.22 deleterious(0) probably_damaging(0.996) TCGA-H7-7774-01 13 77651324 77651324 C T MYCBP2 Missense_Mutation p.E3857K 0.29 probably_damaging(0.968) TCGA-H7-7774-01 13 84455029 84455029 G A SLITRK1 Missense_Mutation p.A205V 0.34 tolerated(1) benign(0.002) TCGA-H7-7774-01 14 105409647 105409647 G C AHNAK2 Silent p.L4047L 0.04 TCGA-H7-7774-01 14 21873943 21873943 C T CHD8 Silent p.P996P 0.06 TCGA-H7-7774-01 14 34263139 34263139 G A NPAS3 Missense_Mutation p.R397H 0.16 deleterious(0) possibly_damaging(0.886) TCGA-H7-7774-01 14 93408122 93408122 G A ITPK1 Silent p.A343A 0.22 TCGA-H7-7774-01 14 93412800 93412800 G T ITPK1 Missense_Mutation p.D259E 0.11 tolerated(0.09) benign(0.087) TCGA-H7-7774-01 15 25427409 25427409 T A SNORD115-6 3'Flank 0.30 TCGA-H7-7774-01 15 33962690 33962690 T G RYR3 Silent p.V1931V 0.21 TCGA-H7-7774-01 15 43815140 43815140 G A MAP1A Missense_Mutation p.R490H 0.43 probably_damaging(0.921) TCGA-H7-7774-01 15 50763974 50763974 G C USP8 Silent p.L277L 0.04 TCGA-H7-7774-01 15 55931991 55931991 G A PRTG Missense_Mutation p.P725S 0.10 deleterious(0) probably_damaging(0.997) TCGA-H7-7774-01 15 65793046 65793046 G A DPP8 Silent p.V164V 0.32 TCGA-H7-7774-01 15 72119040 72119040 G A MYO9A Nonsense_Mutation p.Q2510* 0.30 TCGA-H7-7774-01 15 73048712 73048712 C T ADPGK Missense_Mutation p.M240I 0.07 deleterious(0.05) benign(0.053) TCGA-H7-7774-01 15 89754989 89754989 C T RLBP1 Missense_Mutation p.M223I 0.09 tolerated(0.07) probably_damaging(0.937) TCGA-H7-7774-01 15 91542965 91542965 G C VPS33B Missense_Mutation p.F572L 0.03 deleterious(0) probably_damaging(0.997) TCGA-H7-7774-01 16 1614075 1614075 C T IFT140 Missense_Mutation p.E664K 0.08 deleterious(0) probably_damaging(0.987) TCGA-H7-7774-01 16 20565237 20565237 G A ACSM2B Missense_Mutation p.A201V 0.21 deleterious(0.05) possibly_damaging(0.566) TCGA-H7-7774-01 16 3820572 3820572 G C CREBBP Missense_Mutation p.P960R 0.20 unknown(0) TCGA-H7-7774-01 16 67263809 67263809 G T FHOD1 Missense_Mutation p.P1100H 0.29 tolerated(0.1) probably_damaging(0.94) TCGA-H7-7774-01 16 67663349 67663361 GAGGGGGAAAATG - CTCF Frame_Shift_Del p.G585Efs*42 0.31 TCGA-H7-7774-01 16 68390961 68390961 G A PRMT7 Missense_Mutation p.G638D 0.12 tolerated(0.82) benign(0) TCGA-H7-7774-01 16 784374 784374 T C NARFL Intron 0.25 TCGA-H7-7774-01 17 10404746 10404746 C T MYH1 Missense_Mutation p.R1140H 0.21 deleterious(0.01) probably_damaging(1) TCGA-H7-7774-01 17 1183494 1183494 G A TUSC5 Missense_Mutation p.E67K 0.24 tolerated(0.68) possibly_damaging(0.689) TCGA-H7-7774-01 17 1387576 1387576 G A MYO1C Missense_Mutation p.R33W 0.18 deleterious(0) probably_damaging(0.998) TCGA-H7-7774-01 17 26913009 26913009 C T SPAG5 Missense_Mutation p.R538H 0.23 tolerated(0.32) benign(0.002) TCGA-H7-7774-01 17 3030045 3030045 C T OR1G1 Silent p.S267S 0.32 TCGA-H7-7774-01 17 38175892 38175892 C T MED24 Missense_Mutation p.E954K 0.32 tolerated(0.84) benign(0.159) TCGA-H7-7774-01 17 39633304 39633304 G A KRT35 Intron 0.09 TCGA-H7-7774-01 17 56060414 56060414 C T VEZF1 Missense_Mutation p.R125Q 0.21 tolerated(0.62) benign(0.36) TCGA-H7-7774-01 17 5998441 5998441 C T WSCD1 Silent p.R249R 0.17 TCGA-H7-7774-01 17 7216126 7216127 - GG GPS2 Frame_Shift_Ins p.R312Lfs*34 0.14 TCGA-H7-7774-01 18 24039710 24039710 C G KCTD1 Missense_Mutation p.L163F 0.06 deleterious(0) probably_damaging(0.974) TCGA-H7-7774-01 18 9257777 9257777 G T ANKRD12 Silent p.S1504S 0.26 TCGA-H7-7774-01 19 12089308 12089308 G A ZNF763 Missense_Mutation p.R193H 0.29 tolerated(1) benign(0) TCGA-H7-7774-01 19 17768990 17768990 C T UNC13A Silent p.T216T 0.09 TCGA-H7-7774-01 19 3179595 3179595 G A S1PR4 Missense_Mutation p.G269R 0.35 deleterious(0.04) possibly_damaging(0.696) TCGA-H7-7774-01 19 33702376 33702376 C A SLC7A10 Missense_Mutation p.A286S 0.19 deleterious(0.02) probably_damaging(1) TCGA-H7-7774-01 19 36206144 36206148 GATGG - ZBTB32 Frame_Shift_Del p.D206Efs*16 0.23 TCGA-H7-7774-01 19 37854366 37854366 G A HKR1 Missense_Mutation p.E557K 0.26 deleterious(0.02) possibly_damaging(0.536) TCGA-H7-7774-01 19 58004287 58004287 G A ZNF419 Missense_Mutation p.S122N 0.18 tolerated(0.38) benign(0.054) TCGA-H7-7774-01 19 7805398 7805398 G T CD209 3'UTR 0.50 TCGA-H7-7774-01 1 109795883 109795883 C T CELSR2 Missense_Mutation p.T1061I 0.27 tolerated(0.39) benign(0.004) TCGA-H7-7774-01 1 111985333 111985333 C T WDR77 Missense_Mutation p.V248I 0.21 tolerated(0.18) benign(0.001) TCGA-H7-7774-01 1 145075708 145075708 C T PDE4DIP Missense_Mutation p.R52Q 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.785) TCGA-H7-7774-01 1 156268971 156268971 T G VHLL Silent p.R4R 0.21 TCGA-H7-7774-01 1 158047906 158047906 C T KIRREL Missense_Mutation p.R110W 0.06 deleterious(0) probably_damaging(0.954) TCGA-H7-7774-01 1 158549570 158549570 C T OR10X1 Silent p.Q40Q 0.07 TCGA-H7-7774-01 1 171250015 171250015 C G FMO1 Missense_Mutation p.Q240E 0.09 tolerated(0.55) benign(0.015) TCGA-H7-7774-01 1 180080243 180080243 A G CEP350 Missense_Mutation p.I3101V 0.33 benign(0.012) TCGA-H7-7774-01 1 203013095 203013095 C T PPFIA4 Missense_Mutation p.H125Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-H7-7774-01 1 207135705 207135705 G A FCAMR Missense_Mutation p.R169C 0.39 deleterious(0) probably_damaging(1) TCGA-H7-7774-01 1 21031194 21031194 G A KIF17 Missense_Mutation p.S290L 0.29 deleterious(0) probably_damaging(0.999) TCGA-H7-7774-01 1 236341831 236341831 A T GPR137B Silent p.R194R 0.33 TCGA-H7-7774-01 1 32148956 32148956 G A COL16A1 Silent p.A798A 0.23 TCGA-H7-7774-01 21 46047037 46047037 C T TSPEAR Intron 0.24 TCGA-H7-7774-01 22 32625325 32625325 C T SLC5A4 Missense_Mutation p.R379Q 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-H7-7774-01 22 36623928 36623928 G A APOL2 Missense_Mutation p.A179V 0.30 deleterious(0.02) benign(0.355) TCGA-H7-7774-01 22 41564866 41564866 C G EP300 Missense_Mutation p.N1389K 0.06 probably_damaging(0.999) TCGA-H7-7774-01 2 165365311 165365311 C T GRB14 Missense_Mutation p.V290M 0.19 tolerated(0.41) benign(0.016) TCGA-H7-7774-01 2 175252492 175252492 G A CIR1 Nonsense_Mutation p.Q30* 0.20 TCGA-H7-7774-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.06 deleterious(0) probably_damaging(1) TCGA-H7-7774-01 2 178098957 178098957 G A NFE2L2 Missense_Mutation p.L30F 0.19 deleterious(0) probably_damaging(1) TCGA-H7-7774-01 2 179584490 179584490 C A TTN Missense_Mutation p.C7910F 0.07 TCGA-H7-7774-01 2 202523236 202523236 C T MPP4 Missense_Mutation p.E365K 0.32 tolerated(0.23) benign(0.021) TCGA-H7-7774-01 2 220397137 220397137 G A ASIC4 Missense_Mutation p.R446Q 0.38 deleterious(0.03) probably_damaging(0.981) TCGA-H7-7774-01 2 223158409 223158409 G A PAX3 Intron 0.23 TCGA-H7-7774-01 2 238726938 238726938 G A RBM44 Missense_Mutation p.S460N 0.35 tolerated(0.79) benign(0.006) TCGA-H7-7774-01 2 33413884 33413884 T C LTBP1 Missense_Mutation p.L556P 0.31 deleterious(0) probably_damaging(0.996) TCGA-H7-7774-01 2 54080512 54080512 G A GPR75 Missense_Mutation p.S461F 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-H7-7774-01 2 98264531 98264531 G A COX5B Missense_Mutation p.G117E 0.09 deleterious(0) probably_damaging(1) TCGA-H7-7774-01 3 101520161 101520161 G A NXPE3 Missense_Mutation p.R59Q 0.04 tolerated(0.18) benign(0.067) TCGA-H7-7774-01 3 123046600 123046600 G C ADCY5 Missense_Mutation p.I604M 0.10 deleterious(0) probably_damaging(0.994) TCGA-H7-7774-01 3 17056295 17056295 C T PLCL2 Silent p.P844P 0.26 TCGA-H7-7774-01 3 172165820 172165820 G A GHSR Silent p.Y128Y 0.26 TCGA-H7-7774-01 3 17226630 17226630 T C TBC1D5 Missense_Mutation p.Y630C 0.28 deleterious(0) probably_damaging(0.999) TCGA-H7-7774-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.23 tolerated(0.11) possibly_damaging(0.529) TCGA-H7-7774-01 3 28557085 28557085 G A ZCWPW2 Missense_Mutation p.D253N 0.25 deleterious(0.04) benign(0.042) TCGA-H7-7774-01 3 47147603 47147603 A T SETD2 Missense_Mutation p.F1575I 0.27 deleterious(0) benign(0.094) TCGA-H7-7774-01 3 48460693 48460693 C G PLXNB1 Missense_Mutation p.R931P 0.43 deleterious(0.03) possibly_damaging(0.458) TCGA-H7-7774-01 3 85932554 85932554 A T CADM2 Missense_Mutation p.M111L 0.37 tolerated(0.16) benign(0.295) TCGA-H7-7774-01 3 89468369 89468369 G T EPHA3 Missense_Mutation p.V635L 0.36 deleterious(0.03) probably_damaging(0.974) TCGA-H7-7774-01 3 9691417 9691417 C A MTMR14 Silent p.G50G 0.32 TCGA-H7-7774-01 4 126412412 126412412 G T FAT4 Missense_Mutation p.R4812M 0.29 probably_damaging(0.995) TCGA-H7-7774-01 4 148554974 148554974 C T TMEM184C Missense_Mutation p.S313L 0.04 deleterious(0.01) possibly_damaging(0.772) TCGA-H7-7774-01 4 153691769 153691770 - A TIGD4 Frame_Shift_Ins p.N130* 0.12 TCGA-H7-7774-01 4 187525008 187525008 C A FAT1 Nonsense_Mutation p.E3558* 0.20 TCGA-H7-7774-01 4 187539863 187539863 C T FAT1 Missense_Mutation p.G2626D 0.22 probably_damaging(1) TCGA-H7-7774-01 4 3318626 3318626 G A RGS12 Silent p.T243T 0.20 TCGA-H7-7774-01 4 56315585 56315585 C G CLOCK Missense_Mutation p.R476T 0.34 tolerated(0.19) possibly_damaging(0.701) TCGA-H7-7774-01 5 140230437 140230437 C T PCDHA9 Missense_Mutation p.T786M 0.23 tolerated_low_confidence(0.11) benign(0.006) TCGA-H7-7774-01 5 140257232 140257232 G A PCDHA12 Silent p.A725A 0.12 TCGA-H7-7774-01 5 170148874 170148874 C T KCNIP1 Silent p.F109F 0.34 TCGA-H7-7774-01 5 35659168 35659168 C T SPEF2 Silent p.S342S 0.37 TCGA-H7-7774-01 5 78611869 78611869 T - JMY Frame_Shift_Del p.H904Ifs*2 0.23 TCGA-H7-7774-01 5 88027717 88027717 C T MEF2C Silent p.G231G 0.33 TCGA-H7-7774-01 6 105233004 105233004 C T HACE1 Missense_Mutation p.G422D 0.06 tolerated(0.67) benign(0) TCGA-H7-7774-01 6 114378489 114378489 G A HS3ST5 Missense_Mutation p.R325C 0.34 tolerated(0.15) benign(0.009) TCGA-H7-7774-01 6 129649434 129649434 G A LAMA2 Silent p.P1396P 0.21 TCGA-H7-7774-01 6 134210907 134210907 G A TCF21 Silent p.A124A 0.24 TCGA-H7-7774-01 6 143605338 143605338 C T AIG1 Missense_Mutation p.T164I 0.14 tolerated(0.54) benign(0.001) TCGA-H7-7774-01 6 24709057 24709059 ACA - C6orf62 In_Frame_Del p.V171del 0.18 TCGA-H7-7774-01 6 26056394 26056394 A C HIST1H1C Missense_Mutation p.V88G 0.12 deleterious(0) probably_damaging(0.999) TCGA-H7-7774-01 6 32097032 32097032 G A FKBPL Nonsense_Mutation p.Q176* 0.06 TCGA-H7-7774-01 6 7727808 7727808 C T BMP6 Missense_Mutation p.A207V 0.30 tolerated(0.27) possibly_damaging(0.747) TCGA-H7-7774-01 7 119914673 119914673 C T KCND2 5'UTR 0.34 TCGA-H7-7774-01 7 131849918 131849918 G A PLXNA4 Missense_Mutation p.T1443I 0.30 deleterious(0) possibly_damaging(0.902) TCGA-H7-7774-01 7 141896542 141896542 G T RP11-1220K2.2 Nonsense_Mutation p.E1520* 0.20 TCGA-H7-7774-01 7 150389491 150389491 G A GIMAP2 Silent p.G39G 0.23 TCGA-H7-7774-01 7 151859299 151859300 - AAGAT KMT2C Frame_Shift_Ins p.S3788Yfs*5 0.22 TCGA-H7-7774-01 7 24756873 24756873 C T DFNA5 Missense_Mutation p.E233K 0.20 deleterious(0.03) benign(0.284) TCGA-H7-7774-01 7 47944031 47944031 G T PKD1L1 Missense_Mutation p.D625E 0.33 deleterious(0.01) possibly_damaging(0.699) TCGA-H7-7774-01 7 57188354 57188354 A G ZNF479 Silent p.L256L 0.14 TCGA-H7-7774-01 7 6426860 6426860 G A RAC1 Missense_Mutation p.C18Y 0.27 deleterious(0) possibly_damaging(0.597) TCGA-H7-7774-01 7 75192259 75192259 C T HIP1 Missense_Mutation p.D334N 0.12 tolerated(0.08) benign(0.394) TCGA-H7-7774-01 7 883126 883126 G A SUN1 Silent p.S209S 0.24 TCGA-H7-7774-01 8 110412468 110412468 T C PKHD1L1 Silent p.F392F 0.09 TCGA-H7-7774-01 8 110535536 110535536 C T PKHD1L1 Silent p.V4135V 0.27 TCGA-H7-7774-01 8 113353856 113353856 G A CSMD3 Nonsense_Mutation p.R2168* 0.41 TCGA-H7-7774-01 8 117658786 117658786 C A EIF3H Silent p.P295P 0.23 TCGA-H7-7774-01 8 144991068 144991068 C T PLEC Silent p.T4444T 0.06 TCGA-H7-7774-01 8 1626408 1626408 G A DLGAP2 Missense_Mutation p.V693I 0.32 deleterious(0) probably_damaging(0.999) TCGA-H7-7774-01 8 61765577 61765577 G A CHD7 Missense_Mutation p.R2098Q 0.33 benign(0.021) TCGA-H7-7774-01 8 73480224 73480224 C T KCNB2 Silent p.N85N 0.28 TCGA-H7-7774-01 8 95419835 95419835 C T RAD54B Missense_Mutation p.G205S 0.10 tolerated(0.07) probably_damaging(1) TCGA-H7-7774-01 8 97892096 97892096 G A CPQ Missense_Mutation p.D238N 0.04 deleterious(0.01) probably_damaging(0.988) TCGA-H7-7774-01 9 107288587 107288587 C G OR13C4 Missense_Mutation p.D302H 0.07 deleterious(0) probably_damaging(0.956) TCGA-H7-7774-01 9 107380043 107380043 G T OR13C9 Missense_Mutation p.S148Y 0.12 deleterious(0) probably_damaging(0.941) TCGA-H7-7774-01 9 113139598 113139598 T A SVEP1 Missense_Mutation p.N3486I 0.31 probably_damaging(0.999) TCGA-H7-7774-01 9 113170974 113170974 C T SVEP1 Nonsense_Mutation p.W2302* 0.24 TCGA-H7-7774-01 9 115760171 115760171 T G ZNF883 RNA 0.06 TCGA-H7-7774-01 9 18574122 18574122 T C ADAMTSL1 Missense_Mutation p.V111A 0.27 tolerated(0.09) possibly_damaging(0.806) TCGA-H7-7774-01 9 35059087 35059087 C T VCP Missense_Mutation p.E712K 0.28 tolerated(0.37) benign(0.008) TCGA-H7-7774-01 9 37518327 37518327 C T FBXO10 Missense_Mutation p.R770Q 0.37 tolerated(0.16) probably_damaging(0.948) TCGA-H7-7774-01 9 37854962 37854962 G A DCAF10 Missense_Mutation p.R346K 0.23 tolerated(0.14) benign(0.111) TCGA-H7-7774-01 9 74838108 74838108 G A GDA Missense_Mutation p.G227S 0.20 tolerated(0.11) probably_damaging(0.998) TCGA-H7-7774-01 9 77370340 77370340 G A TRPM6 Missense_Mutation p.P1612L 0.27 deleterious_low_confidence(0.04) benign(0.018) TCGA-H7-7774-01 X 100240718 100240718 T C ARL13A Missense_Mutation p.Y65H 0.06 deleterious(0.02) probably_damaging(0.992) TCGA-H7-7774-01 X 118763217 118763217 C T SEPT6 Intron 0.32 TCGA-H7-7774-01 X 119059238 119059238 A G NKAP Missense_Mutation p.L398P 0.25 deleterious(0) unknown(0) TCGA-H7-7774-01 X 123196817 123196817 C A STAG2 Silent p.A568A 0.26 TCGA-H7-7774-01 X 130217855 130217855 G A ARHGAP36 Missense_Mutation p.R156Q 0.34 tolerated(0.82) benign(0) TCGA-H7-7774-01 X 135047295 135047295 T C MMGT1 Missense_Mutation p.H95R 0.30 deleterious(0.04) benign(0.211) TCGA-H7-7774-01 X 135313731 135313731 G A MAP7D3 Missense_Mutation p.P462L 0.26 tolerated(0.07) benign(0.301) TCGA-H7-7774-01 X 137715119 137715119 G A FGF13 Silent p.H220H 0.09 TCGA-H7-7774-01 X 30254629 30254629 G T MAGEB3 Missense_Mutation p.R196S 0.25 tolerated(0.15) possibly_damaging(0.612) TCGA-H7-7774-01 X 34149053 34149053 C T FAM47A Missense_Mutation p.R448Q 0.10 tolerated(0.52) probably_damaging(0.947) TCGA-H7-7774-01 X 41075168 41075168 G A USP9X Missense_Mutation p.R1783H 0.07 deleterious(0) probably_damaging(0.997) TCGA-H7-7774-01 X 48054486 48054486 G A SSX5 Missense_Mutation p.A50V 0.35 deleterious_low_confidence(0.03) benign(0.008) TCGA-H7-7774-01 X 49127007 49127007 T A PPP1R3F Silent p.G225G 0.35 TCGA-H7-7774-01 X 53279948 53279948 C T IQSEC2 Missense_Mutation p.V604M 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-H7-7774-01 X 53577938 53577938 C A HUWE1 Silent p.R3103R 0.21 TCGA-H7-8501-01 10 102749197 102749197 G A C10orf2 Silent p.L410L 0.17 TCGA-H7-8501-01 10 103988638 103988638 C T ELOVL3 Missense_Mutation p.H148Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-H7-8501-01 10 104592419 104592419 C T CYP17A1 Missense_Mutation p.E330K 0.12 tolerated(0.25) benign(0.025) TCGA-H7-8501-01 10 120829139 120829139 G A EIF3A Missense_Mutation p.H257Y 0.23 deleterious(0.01) unknown(0) TCGA-H7-8501-01 10 14976739 14976739 G A DCLRE1C Missense_Mutation p.T167M 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-H7-8501-01 10 55591146 55591146 C A PCDH15 Missense_Mutation p.L1377F 0.15 deleterious(0) probably_damaging(0.999) TCGA-H7-8501-01 10 69692359 69692359 C T HERC4 Missense_Mutation p.E953K 0.17 deleterious(0) probably_damaging(0.998) TCGA-H7-8501-01 10 71168822 71168822 G A TACR2 Silent p.L199L 0.20 TCGA-H7-8501-01 11 46748086 46748086 G A F2 Missense_Mutation p.E305K 0.20 tolerated(0.31) benign(0.08) TCGA-H7-8501-01 11 534289 534289 C T HRAS Missense_Mutation p.G12S 0.51 deleterious(0.02) possibly_damaging(0.525) TCGA-H7-8501-01 11 608214 608214 G C PHRF1 Missense_Mutation p.E919Q 0.11 tolerated(0.05) benign(0.284) TCGA-H7-8501-01 11 6977363 6977363 G A ZNF215 Silent p.G385G 0.29 TCGA-H7-8501-01 11 86382833 86382833 C A ME3 Missense_Mutation p.D52Y 0.38 deleterious(0.02) possibly_damaging(0.699) TCGA-H7-8501-01 11 88061298 88061298 G A CTSC Intron 0.26 TCGA-H7-8501-01 11 9750958 9750958 C T SWAP70 Silent p.I286I 0.12 TCGA-H7-8501-01 12 114404142 114404142 A G RBM19 5'Flank 0.20 TCGA-H7-8501-01 12 132471207 132471207 C T EP400 Missense_Mutation p.S693L 0.19 unknown(0) TCGA-H7-8501-01 12 40618896 40618896 C T LRRK2 5'UTR 0.17 TCGA-H7-8501-01 12 41967568 41967568 T A PDZRN4 Missense_Mutation p.M996K 0.21 deleterious(0) probably_damaging(0.972) TCGA-H7-8501-01 12 4479477 4479477 G A FGF23 3'UTR 0.41 TCGA-H7-8501-01 12 48919952 48919952 G C OR8S1 Missense_Mutation p.E180Q 0.18 deleterious(0) probably_damaging(0.97) TCGA-H7-8501-01 12 49432444 49432444 C T KMT2D Missense_Mutation p.G2899S 0.37 probably_damaging(0.918) TCGA-H7-8501-01 12 52967160 52967160 C G KRT74 Missense_Mutation p.Q134H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-H7-8501-01 12 53876955 53876955 C T MAP3K12 Silent p.T544T 0.12 TCGA-H7-8501-01 12 64878099 64878099 G A TBK1 Missense_Mutation p.E337K 0.19 deleterious(0.01) benign(0.113) TCGA-H7-8501-01 12 95488418 95488418 C G FGD6 Missense_Mutation p.E1184Q 0.17 deleterious(0) benign(0.321) TCGA-H7-8501-01 13 42701667 42701667 C T DGKH Silent p.F87F 0.17 TCGA-H7-8501-01 13 52598374 52598374 G A ALG11 Missense_Mutation p.D170N 0.21 deleterious(0.03) benign(0.411) TCGA-H7-8501-01 13 67801352 67801352 G A PCDH9 Silent p.V407V 0.17 TCGA-H7-8501-01 14 102901162 102901162 G A TECPR2 Missense_Mutation p.D670N 0.19 tolerated_low_confidence(0.11) benign(0.002) TCGA-H7-8501-01 14 33291302 33291302 C T AKAP6 Missense_Mutation p.S1428L 0.13 tolerated_low_confidence(0.16) benign(0.003) TCGA-H7-8501-01 14 70633834 70633834 C G SLC8A3 Missense_Mutation p.E436Q 0.17 tolerated(0.06) possibly_damaging(0.73) TCGA-H7-8501-01 14 95670430 95670430 G A CLMN Missense_Mutation p.S419F 0.16 deleterious(0.01) benign(0.08) TCGA-H7-8501-01 15 28451477 28451477 G A HERC2 Missense_Mutation p.P2374L 0.10 benign(0.228) TCGA-H7-8501-01 15 72638653 72638653 C T HEXA Silent p.Q448Q 0.24 TCGA-H7-8501-01 15 75660449 75660449 G A MAN2C1 Silent p.F64F 0.30 TCGA-H7-8501-01 15 89804048 89804048 G C FANCI Missense_Mutation p.E88Q 0.32 deleterious(0.01) probably_damaging(0.931) TCGA-H7-8501-01 16 28842045 28842045 C T ATXN2L Missense_Mutation p.R382C 0.20 deleterious(0.02) benign(0.007) TCGA-H7-8501-01 16 4715153 4715153 G T MGRN1 Splice_Site p.X226_splice 0.23 TCGA-H7-8501-01 16 67680212 67680212 G C RLTPR Missense_Mutation p.G125R 0.17 tolerated(0.29) benign(0.008) TCGA-H7-8501-01 16 69726982 69726982 C G NFAT5 Nonsense_Mutation p.S1085* 0.21 TCGA-H7-8501-01 16 69727005 69727005 C G NFAT5 Missense_Mutation p.Q1093E 0.20 benign(0.034) TCGA-H7-8501-01 16 69727105 69727105 C T NFAT5 Missense_Mutation p.S1126F 0.24 possibly_damaging(0.701) TCGA-H7-8501-01 17 10427801 10427801 A G MYH2 Silent p.V1719V 0.23 TCGA-H7-8501-01 17 15217438 15217438 C T TEKT3 Missense_Mutation p.G282S 0.22 tolerated(1) benign(0.007) TCGA-H7-8501-01 17 1634142 1634142 T G WDR81 Missense_Mutation p.I1290S 0.20 tolerated(0.47) benign(0.062) TCGA-H7-8501-01 17 16722211 16722211 G A AC022596.6 RNA 0.10 TCGA-H7-8501-01 17 18967371 18967371 G C SNORD3B-2 RNA 0.26 TCGA-H7-8501-01 17 34136487 34136487 C T TAF15 5'UTR 0.17 TCGA-H7-8501-01 17 3999943 3999943 C T ZZEF1 Missense_Mutation p.G575E 0.16 tolerated(1) benign(0.056) TCGA-H7-8501-01 17 46690733 46690733 C T HOXB8 Missense_Mutation p.R188K 0.13 deleterious(0) probably_damaging(0.992) TCGA-H7-8501-01 17 48154800 48154800 C T ITGA3 Missense_Mutation p.R710W 0.22 deleterious(0.01) possibly_damaging(0.88) TCGA-H7-8501-01 17 5319905 5319905 A T NUP88 Missense_Mutation p.M132K 0.19 tolerated(0.09) benign(0.063) TCGA-H7-8501-01 17 57917153 57917153 T C VMP1 Missense_Mutation p.F368L 0.17 tolerated(0.16) benign(0.307) TCGA-H7-8501-01 17 7214726 7214726 G A EIF5A Missense_Mutation p.E140K 0.26 deleterious(0.03) possibly_damaging(0.815) TCGA-H7-8501-01 17 7214764 7214764 G C EIF5A Missense_Mutation p.E152D 0.24 tolerated(0.15) benign(0.006) TCGA-H7-8501-01 17 725684 725684 C T NXN Missense_Mutation p.R209Q 0.20 deleterious(0.02) benign(0.252) TCGA-H7-8501-01 17 7504747 7504747 C T FXR2 Missense_Mutation p.E214K 0.22 deleterious(0.04) possibly_damaging(0.814) TCGA-H7-8501-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.21 deleterious(0) probably_damaging(0.999) TCGA-H7-8501-01 17 7579521 7579521 C A TP53 Nonsense_Mutation p.E56* 0.19 TCGA-H7-8501-01 18 2589202 2589202 G A NDC80 Splice_Site p.X255_splice 0.16 TCGA-H7-8501-01 18 28908287 28908287 G A DSG1 Missense_Mutation p.E118K 0.09 deleterious(0) probably_damaging(1) TCGA-H7-8501-01 18 50976938 50976938 G T DCC Missense_Mutation p.V1100L 0.07 tolerated(0.71) benign(0.002) TCGA-H7-8501-01 18 74637271 74637271 G A ZNF236 Missense_Mutation p.R1261H 0.15 deleterious(0) probably_damaging(0.988) TCGA-H7-8501-01 18 9547775 9547775 G C PPP4R1 3'UTR 0.19 TCGA-H7-8501-01 19 11280795 11280795 C A KANK2 Nonsense_Mutation p.E789* 0.16 TCGA-H7-8501-01 19 22272184 22272184 A T ZNF257 Missense_Mutation p.K544N 0.17 deleterious(0.02) benign(0.067) TCGA-H7-8501-01 19 23414966 23414966 C T ZNF724P Intron 0.17 TCGA-H7-8501-01 19 37413550 37413550 C T ZNF568 5'UTR 0.24 TCGA-H7-8501-01 19 4283194 4283194 C A SHD Missense_Mutation p.Q183K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-H7-8501-01 19 9076139 9076139 G A MUC16 Silent p.I3769I 0.20 TCGA-H7-8501-01 1 108315464 108315464 C G VAV3 Missense_Mutation p.E150Q 0.16 tolerated(0.08) possibly_damaging(0.881) TCGA-H7-8501-01 1 154492809 154492809 C G TDRD10 Missense_Mutation p.F57L 0.17 deleterious(0.01) benign(0.122) TCGA-H7-8501-01 1 155255061 155255061 G A HCN3 Missense_Mutation p.E399K 0.15 deleterious(0) possibly_damaging(0.834) TCGA-H7-8501-01 1 155885506 155885506 C T KIAA0907 Intron 0.22 TCGA-H7-8501-01 1 156214507 156214507 C T PAQR6 Missense_Mutation p.A163T 0.29 deleterious_low_confidence(0) benign(0.004) TCGA-H7-8501-01 1 16357119 16357119 C G CLCNKA Missense_Mutation p.I524M 0.23 deleterious(0) possibly_damaging(0.603) TCGA-H7-8501-01 1 172635208 172635208 G A FASLG 3'UTR 0.20 TCGA-H7-8501-01 1 1956400 1956400 G A GABRD Missense_Mutation p.D30N 0.17 tolerated(0.08) possibly_damaging(0.691) TCGA-H7-8501-01 1 209786148 209786148 C A CAMK1G Silent p.V453V 0.22 TCGA-H7-8501-01 1 236189232 236189232 G A NID1 Missense_Mutation p.R650C 0.19 deleterious(0) probably_damaging(0.993) TCGA-H7-8501-01 1 26349536 26349536 C T EXTL1 Silent p.L133L 0.16 TCGA-H7-8501-01 1 26581908 26581908 C G CEP85 Missense_Mutation p.S152C 0.17 tolerated(0.18) benign(0) TCGA-H7-8501-01 1 38033324 38033324 C A GNL2 Nonsense_Mutation p.E665* 0.22 TCGA-H7-8501-01 1 55058269 55058269 C G ACOT11 Missense_Mutation p.S121C 0.32 deleterious(0) probably_damaging(0.971) TCGA-H7-8501-01 1 72748211 72748211 C T NEGR1 5'UTR 0.26 TCGA-H7-8501-01 1 9305538 9305538 C T H6PD Missense_Mutation p.S182L 0.13 deleterious(0) probably_damaging(0.992) TCGA-H7-8501-01 20 1161732 1161732 G A TMEM74B Silent p.I177I 0.25 TCGA-H7-8501-01 20 2819590 2819590 G A PCED1A Missense_Mutation p.R115C 0.17 deleterious(0) probably_damaging(0.994) TCGA-H7-8501-01 20 46271097 46271097 G A NCOA3 Missense_Mutation p.R1074K 0.10 tolerated(0.05) benign(0.12) TCGA-H7-8501-01 20 49509600 49509600 C G ADNP Missense_Mutation p.D551H 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-H7-8501-01 21 15750622 15750622 C T HSPA13 Missense_Mutation p.E160K 0.14 deleterious(0) probably_damaging(0.999) TCGA-H7-8501-01 21 32595799 32595799 G A TIAM1 Missense_Mutation p.L640F 0.29 deleterious(0) probably_damaging(0.997) TCGA-H7-8501-01 21 46057392 46057392 G A KRTAP10-10 Missense_Mutation p.V20I 0.23 deleterious(0) benign(0.001) TCGA-H7-8501-01 22 18018385 18018385 G A CECR2 Missense_Mutation p.E424K 0.27 deleterious(0.03) probably_damaging(0.986) TCGA-H7-8501-01 22 31337485 31337485 C A MORC2 Missense_Mutation p.M191I 0.31 deleterious(0) probably_damaging(0.995) TCGA-H7-8501-01 22 36745144 36745144 G C MYH9 Silent p.L46L 0.17 TCGA-H7-8501-01 22 36745252 36745252 G C MYH9 Silent p.L10L 0.20 TCGA-H7-8501-01 22 43213818 43213818 C T ARFGAP3 Missense_Mutation p.M286I 0.17 tolerated(0.06) benign(0.001) TCGA-H7-8501-01 22 50553671 50553671 G A MOV10L1 Missense_Mutation p.G419R 0.17 deleterious(0.01) benign(0.038) TCGA-H7-8501-01 2 100199295 100199295 C T AFF3 Missense_Mutation p.D945N 0.20 tolerated(0.1) benign(0.04) TCGA-H7-8501-01 2 107049685 107049685 G C RGPD3 Silent p.L754L 0.13 TCGA-H7-8501-01 2 11770226 11770226 G C GREB1 Silent p.V1534V 0.15 TCGA-H7-8501-01 2 143676204 143676204 G C KYNU Missense_Mutation p.E66Q 0.26 tolerated(0.18) benign(0.011) TCGA-H7-8501-01 2 152318772 152318772 A T RIF1 Missense_Mutation p.M1082L 0.39 tolerated(0.17) benign(0.029) TCGA-H7-8501-01 2 166615334 166615334 C G GALNT3 Missense_Mutation p.E372Q 0.23 tolerated(0.18) benign(0.16) TCGA-H7-8501-01 2 182386960 182386960 G C ITGA4 Missense_Mutation p.K655N 0.45 deleterious(0.05) probably_damaging(1) TCGA-H7-8501-01 2 191835441 191835441 C T STAT1 Missense_Mutation p.M747I 0.24 tolerated_low_confidence(0.21) benign(0.001) TCGA-H7-8501-01 2 191840560 191840560 C T STAT1 Missense_Mutation p.E705K 0.07 tolerated(1) benign(0.023) TCGA-H7-8501-01 2 202137385 202137385 A G CASP8 Missense_Mutation p.M205V 0.43 deleterious(0) probably_damaging(0.925) TCGA-H7-8501-01 2 203846292 203846292 G A CARF Missense_Mutation p.E525K 0.38 deleterious(0.03) possibly_damaging(0.641) TCGA-H7-8501-01 2 20990107 20990107 G C C2orf43 Missense_Mutation p.S69C 0.25 tolerated(0.26) benign(0.049) TCGA-H7-8501-01 2 21247865 21247865 G C APOB Silent p.L792L 0.19 TCGA-H7-8501-01 2 219137576 219137576 G A PNKD Intron 0.08 TCGA-H7-8501-01 2 220432561 220432561 G C OBSL1 Missense_Mutation p.I471M 0.08 deleterious(0.04) benign(0.308) TCGA-H7-8501-01 2 233759519 233759519 G A NGEF Silent p.S312S 0.28 TCGA-H7-8501-01 2 235950835 235950835 C G SH3BP4 Silent p.V474V 0.41 TCGA-H7-8501-01 2 39088439 39088439 G A DHX57 Silent p.L371L 0.23 TCGA-H7-8501-01 2 65540957 65540957 C T SPRED2 Missense_Mutation p.C312Y 0.21 deleterious(0) probably_damaging(1) TCGA-H7-8501-01 2 96963148 96963148 C T SNRNP200 Missense_Mutation p.E444K 0.28 deleterious(0) probably_damaging(0.96) TCGA-H7-8501-01 2 98351029 98351029 G T ZAP70 Silent p.T312T 0.14 TCGA-H7-8501-01 3 107474523 107474523 G A BBX Missense_Mutation p.E302K 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-H7-8501-01 3 113327031 113327031 G A SIDT1 Silent p.R523R 0.18 TCGA-H7-8501-01 3 124738226 124738226 C T HEG1 Missense_Mutation p.D490N 0.21 tolerated(0.33) benign(0.165) TCGA-H7-8501-01 3 125701278 125701278 G C ROPN1B Missense_Mutation p.E188Q 0.23 tolerated(0.52) benign(0.228) TCGA-H7-8501-01 3 133119350 133119350 G A BFSP2 Silent p.E141E 0.20 TCGA-H7-8501-01 3 133647532 133647532 G C C3orf36 Nonsense_Mutation p.S39* 0.28 TCGA-H7-8501-01 3 134960105 134960105 G A EPHB1 Missense_Mutation p.G821E 0.17 deleterious(0) probably_damaging(1) TCGA-H7-8501-01 3 154147161 154147161 C T GPR149 Missense_Mutation p.V82I 0.06 tolerated(0.31) probably_damaging(0.992) TCGA-H7-8501-01 3 195481096 195481096 G A MUC4 Missense_Mutation p.R5106W 0.24 possibly_damaging(0.527) TCGA-H7-8501-01 3 52524200 52524200 T C NISCH Missense_Mutation p.F1189S 0.05 deleterious(0) benign(0.014) TCGA-H7-8501-01 3 69072305 69072305 G C TMF1 3'UTR 0.20 TCGA-H7-8501-01 4 106600241 106600241 G A ARHGEF38 3'UTR 0.16 TCGA-H7-8501-01 4 108641325 108641325 G A PAPSS1 Missense_Mutation p.P4L 0.15 tolerated_low_confidence(0.41) benign(0) TCGA-H7-8501-01 4 140196470 140196470 G A MGARP Silent p.G53G 0.11 TCGA-H7-8501-01 4 156839325 156839325 G A TDO2 Missense_Mutation p.R334K 0.24 deleterious(0.03) possibly_damaging(0.536) TCGA-H7-8501-01 4 186343657 186343657 G C UFSP2 Missense_Mutation p.Q22E 0.17 tolerated(0.41) benign(0.018) TCGA-H7-8501-01 4 187530372 187530372 C A FAT1 Nonsense_Mutation p.E3391* 0.52 TCGA-H7-8501-01 4 48038345 48038345 G C NIPAL1 3'UTR 0.22 TCGA-H7-8501-01 4 55565907 55565907 C G KIT Nonsense_Mutation p.S244* 0.19 TCGA-H7-8501-01 4 77818756 77818756 C G SOWAHB Missense_Mutation p.E83Q 0.24 tolerated(0.05) benign(0.403) TCGA-H7-8501-01 5 134099644 134099644 G C DDX46 Missense_Mutation p.R23T 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-H7-8501-01 5 1406340 1406340 C T SLC6A3 Missense_Mutation p.R521Q 0.21 tolerated(0.09) benign(0.364) TCGA-H7-8501-01 5 141694466 141694466 C T SPRY4 Missense_Mutation p.G93R 0.19 tolerated(0.57) benign(0.189) TCGA-H7-8501-01 5 153026494 153026494 C A GRIA1 Missense_Mutation p.S86Y 0.18 deleterious(0.01) probably_damaging(1) TCGA-H7-8501-01 5 15937205 15937205 G T FBXL7 Missense_Mutation p.Q462H 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-H7-8501-01 5 167855066 167855066 G C WWC1 Silent p.L613L 0.29 TCGA-H7-8501-01 5 37162628 37162628 G A C5orf42 Silent p.F2543F 0.18 TCGA-H7-8501-01 5 71490923 71490923 G C MAP1B Missense_Mutation p.E581Q 0.14 unknown(0) TCGA-H7-8501-01 5 94820490 94820490 G A TTC37 Nonsense_Mutation p.Q1331* 0.19 TCGA-H7-8501-01 6 150535945 150535945 G A PPP1R14C Silent p.E124E 0.22 TCGA-H7-8501-01 6 157744500 157744500 G C TMEM242 Missense_Mutation p.P11R 0.17 tolerated_low_confidence(0.3) benign(0.005) TCGA-H7-8501-01 6 158510943 158510943 G T SYNJ2 Nonsense_Mutation p.E1177* 0.28 TCGA-H7-8501-01 6 161128754 161128754 G C PLG Missense_Mutation p.E70Q 0.15 deleterious(0.02) possibly_damaging(0.616) TCGA-H7-8501-01 6 26158595 26158595 C T HIST1H2BD Silent p.F66F 0.17 TCGA-H7-8501-01 6 29910349 29910349 C T HLA-A Nonsense_Mutation p.R7* 0.12 TCGA-H7-8501-01 6 33543100 33543100 C T BAK1 Missense_Mutation p.E109K 0.11 deleterious(0.03) benign(0.184) TCGA-H7-8501-01 6 33660511 33660511 C G ITPR3 Missense_Mutation p.L2489V 0.16 deleterious(0.01) benign(0.083) TCGA-H7-8501-01 6 39864721 39864721 C G DAAM2 Silent p.L825L 0.27 TCGA-H7-8501-01 6 43489131 43489131 C T POLR1C 3'UTR 0.21 TCGA-H7-8501-01 6 46129474 46129474 G A ENPP5 Silent p.Y341Y 0.11 TCGA-H7-8501-01 7 100775249 100775252 CTCC - SERPINE1 Frame_Shift_Del p.P201Sfs*23 0.12 TCGA-H7-8501-01 7 106508944 106508944 C T PIK3CG Missense_Mutation p.P313L 0.16 tolerated(0.66) benign(0.006) TCGA-H7-8501-01 7 112407306 112407306 C T TMEM168 Nonsense_Mutation p.W680* 0.12 TCGA-H7-8501-01 7 116340033 116340033 A G MET Missense_Mutation p.I299V 0.21 tolerated(0.26) probably_damaging(0.976) TCGA-H7-8501-01 7 127637910 127637910 A T SND1 Intron 0.21 TCGA-H7-8501-01 7 154684327 154684327 C T DPP6 3'UTR 0.15 TCGA-H7-8501-01 7 157177596 157177596 C A DNAJB6 Missense_Mutation p.L172I 0.21 tolerated(0.13) unknown(0) TCGA-H7-8501-01 7 24325048 24325048 G A NPY Splice_Site p.X63_splice 0.23 TCGA-H7-8501-01 7 26904088 26904088 G A SKAP2 5'UTR 0.18 TCGA-H7-8501-01 7 40039015 40039015 C T CDK13 Missense_Mutation p.R700C 0.26 deleterious(0) probably_damaging(0.988) TCGA-H7-8501-01 7 4247876 4247876 G A SDK1 Missense_Mutation p.G1787E 0.22 deleterious(0.01) probably_damaging(1) TCGA-H7-8501-01 7 53103801 53103801 G A POM121L12 Missense_Mutation p.R146H 0.22 tolerated(0.15) benign(0) TCGA-H7-8501-01 7 93519569 93519569 G A TFPI2 Missense_Mutation p.R51C 0.18 deleterious(0) probably_damaging(0.965) TCGA-H7-8501-01 7 98524949 98524949 G C TRRAP Missense_Mutation p.L1045F 0.19 possibly_damaging(0.852) TCGA-H7-8501-01 8 117868516 117868516 C G RAD21 Missense_Mutation p.D276H 0.36 tolerated(0.09) benign(0.155) TCGA-H7-8501-01 8 128750945 128750945 C T MYC Missense_Mutation p.S161L 0.35 deleterious(0) possibly_damaging(0.888) TCGA-H7-8501-01 8 141727722 141727722 C A PTK2 Missense_Mutation p.G706V 0.11 deleterious(0.04) possibly_damaging(0.571) TCGA-H7-8501-01 9 133779573 133779573 G A FIBCD1 Nonsense_Mutation p.Q422* 0.08 TCGA-H7-8501-01 9 136231752 136231752 G C SURF4 Missense_Mutation p.F169L 0.20 deleterious(0.01) probably_damaging(0.923) TCGA-H7-8501-01 9 139749068 139749068 G A MAMDC4 Missense_Mutation p.A292T 0.30 tolerated(0.87) benign(0.062) TCGA-H7-8501-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.36 TCGA-H7-8501-01 9 21971121 21971121 G A CDKN2A Silent p.T79T 0.36 TCGA-H7-8501-01 9 35870144 35870144 G A OR13J1 Silent p.L85L 0.20 TCGA-H7-8501-01 9 713055 713055 G A KANK1 Silent p.Q763Q 0.26 TCGA-H7-8501-01 9 74828882 74828882 G A GDA Missense_Mutation p.E185K 0.17 tolerated(0.32) benign(0.013) TCGA-H7-8501-01 9 99252296 99252296 G A HABP4 Silent p.P406P 0.08 TCGA-H7-8501-01 X 130220374 130220374 C G ARHGAP36 Missense_Mutation p.I451M 0.45 deleterious(0) probably_damaging(0.995) TCGA-H7-8501-01 X 138664652 138664652 G A MCF2 Missense_Mutation p.S995L 0.07 tolerated_low_confidence(0.07) benign(0.001) TCGA-H7-8501-01 X 150912151 150912151 G A CNGA2 Silent p.V392V 0.32 TCGA-H7-8501-01 X 150912215 150912215 G C CNGA2 Missense_Mutation p.D414H 0.39 deleterious(0) probably_damaging(0.999) TCGA-H7-8501-01 X 1712436 1712436 C T AKAP17A Silent p.I27I 0.20 TCGA-H7-8501-01 X 47107270 47107270 G T USP11 Missense_Mutation p.A945S 0.56 tolerated(0.64) benign(0.026) TCGA-H7-8501-01 Y 6955318 6955318 G C TBL1Y Missense_Mutation p.D431H 0.58 deleterious(0.01) probably_damaging(0.983) TCGA-H7-A6C4-01 10 1262965 1262965 G C ADARB2 Missense_Mutation p.S536R 0.15 tolerated(0.52) possibly_damaging(0.562) TCGA-H7-A6C4-01 10 135369153 135369153 G A SYCE1 Missense_Mutation p.R260C 0.17 tolerated(0.07) possibly_damaging(0.799) TCGA-H7-A6C4-01 10 38241241 38241241 C G ZNF25 Missense_Mutation p.E395D 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-H7-A6C4-01 10 64968932 64968932 G A JMJD1C Missense_Mutation p.L920F 0.15 deleterious(0.01) possibly_damaging(0.873) TCGA-H7-A6C4-01 10 8100451 8100451 C T GATA3 Missense_Mutation p.S142L 0.22 tolerated(0.15) benign(0.3) TCGA-H7-A6C4-01 11 113684607 113684607 C T USP28 Silent p.Q581Q 0.11 TCGA-H7-A6C4-01 11 71724933 71724933 C G NUMA1 Missense_Mutation p.E1206Q 0.07 probably_damaging(0.999) TCGA-H7-A6C4-01 12 14947617 14947617 C T WBP11 Missense_Mutation p.R192H 0.19 tolerated_low_confidence(0.22) unknown(0) TCGA-H7-A6C4-01 12 27116352 27116352 G A FGFR1OP2 Silent p.Q196Q 0.11 TCGA-H7-A6C4-01 12 50395035 50395035 G A RACGAP1 Missense_Mutation p.R184C 0.07 deleterious(0.02) benign(0.04) TCGA-H7-A6C4-01 12 81719626 81719626 C T PPFIA2 Missense_Mutation p.A858T 0.14 tolerated(0.2) benign(0.015) TCGA-H7-A6C4-01 14 75745726 75745726 C T FOS Missense_Mutation p.S14F 0.08 deleterious(0) probably_damaging(0.929) TCGA-H7-A6C4-01 15 74572368 74572368 G C CCDC33 Missense_Mutation p.R275P 0.07 deleterious(0) benign(0.179) TCGA-H7-A6C4-01 17 11593460 11593460 C A DNAH9 Missense_Mutation p.Q1441K 0.12 benign(0.002) TCGA-H7-A6C4-01 17 43474296 43474296 G A ARHGAP27 Missense_Mutation p.A305V 0.31 tolerated(0.3) benign(0.003) TCGA-H7-A6C4-01 17 46622097 46622097 G A HOXB2 Silent p.G59G 0.19 TCGA-H7-A6C4-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.30 TCGA-H7-A6C4-01 19 17441719 17441719 C T ANO8 Missense_Mutation p.R304Q 0.14 deleterious(0.01) probably_damaging(0.958) TCGA-H7-A6C4-01 19 45988963 45988963 T A RTN2 3'UTR 0.09 TCGA-H7-A6C4-01 1 110596572 110596572 G - STRIP1 3'UTR 0.15 TCGA-H7-A6C4-01 1 114184787 114184787 G A MAGI3 Missense_Mutation p.E539K 0.05 tolerated(0.12) benign(0.096) TCGA-H7-A6C4-01 1 152284304 152284304 A C FLG Missense_Mutation p.S1020A 0.03 possibly_damaging(0.859) TCGA-H7-A6C4-01 1 17296411 17296411 G A CROCC Silent p.Q1811Q 0.14 TCGA-H7-A6C4-01 1 98058845 98058845 G A DPYD Missense_Mutation p.R353C 0.25 deleterious(0.01) benign(0.088) TCGA-H7-A6C4-01 20 33508832 33508832 G A ACSS2 Silent p.P402P 0.05 TCGA-H7-A6C4-01 2 128477018 128477018 G T WDR33 Missense_Mutation p.Q861K 0.15 tolerated_low_confidence(0.55) possibly_damaging(0.678) TCGA-H7-A6C4-01 2 201791609 201791609 A C ORC2 Missense_Mutation p.I311S 0.19 deleterious(0) probably_damaging(0.949) TCGA-H7-A6C4-01 2 36691743 36691743 C T CRIM1 Silent p.V312V 0.20 TCGA-H7-A6C4-01 2 61715378 61715378 A C XPO1 Missense_Mutation p.I745M 0.20 deleterious(0) probably_damaging(0.995) TCGA-H7-A6C4-01 2 9519164 9519164 C T ASAP2 Missense_Mutation p.R642W 0.18 deleterious(0) probably_damaging(1) TCGA-H7-A6C4-01 3 119133024 119133024 G A ARHGAP31 Missense_Mutation p.A750T 0.08 tolerated(0.64) benign(0.003) TCGA-H7-A6C4-01 3 52720076 52720076 G T GNL3 5'UTR 0.21 TCGA-H7-A6C4-01 4 42895339 42895339 G A GRXCR1 Missense_Mutation p.R19Q 0.14 deleterious(0.05) probably_damaging(0.996) TCGA-H7-A6C4-01 4 5461873 5461873 A G STK32B Missense_Mutation p.D276G 0.20 deleterious(0.05) possibly_damaging(0.676) TCGA-H7-A6C4-01 5 150891893 150891894 - GG FAT2 Frame_Shift_Ins p.L3913Pfs*12 0.21 TCGA-H7-A6C4-01 5 23509593 23509593 C T PRDM9 Silent p.F28F 0.16 TCGA-H7-A6C4-01 5 42713545 42713545 T C GHR Missense_Mutation p.W267R 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-H7-A6C4-01 6 35773525 35773525 C T LHFPL5 Silent p.G26G 0.20 TCGA-H7-A6C4-01 6 44122113 44122113 G A TMEM63B Silent p.T746T 0.12 TCGA-H7-A6C4-01 6 49698888 49698888 C T CRISP3 Missense_Mutation p.D223N 0.13 tolerated(1) benign(0.008) TCGA-H7-A6C4-01 8 126052082 126052082 C T KIAA0196 Missense_Mutation p.R970Q 0.06 deleterious(0.03) benign(0.007) TCGA-H7-A6C4-01 9 100689610 100689610 G A HEMGN 3'UTR 0.14 TCGA-H7-A6C4-01 9 121930093 121930093 G A BRINP1 Missense_Mutation p.R519W 0.10 deleterious(0) probably_damaging(0.973) TCGA-H7-A6C4-01 9 131085368 131085368 G A COQ4 Silent p.Q48Q 0.08 TCGA-H7-A6C4-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.14 TCGA-H7-A6C4-01 9 27950551 27950551 G T LINGO2 Missense_Mutation p.S40Y 0.18 deleterious(0.01) probably_damaging(0.964) TCGA-H7-A6C4-01 9 35673919 35673919 G A CA9 5'UTR 0.06 TCGA-H7-A6C4-01 X 151899771 151899771 C T MAGEA12 3'UTR 0.12 TCGA-H7-A6C5-01 10 123658387 123658387 T C ATE1 Missense_Mutation p.Q304R 0.24 tolerated(0.27) benign(0.002) TCGA-H7-A6C5-01 10 135438982 135438991 GTGCAAGCCC - FRG2B Frame_Shift_Del p.R150Mfs*12 0.14 TCGA-H7-A6C5-01 10 38305868 38305868 C T ZNF33A Nonsense_Mutation p.Q27* 0.23 TCGA-H7-A6C5-01 10 55583041 55583041 A G PCDH15 Missense_Mutation p.V1484A 0.35 tolerated_low_confidence(0.46) benign(0.002) TCGA-H7-A6C5-01 10 81056456 81056456 A G ZMIZ1 Intron 0.35 TCGA-H7-A6C5-01 10 81154121 81154121 A G ZCCHC24 Missense_Mutation p.C175R 0.25 deleterious(0) probably_damaging(0.998) TCGA-H7-A6C5-01 10 91192814 91192814 C A SLC16A12 3'UTR 0.24 TCGA-H7-A6C5-01 10 92656129 92656129 G A RPP30 Missense_Mutation p.R226Q 0.36 deleterious(0.04) possibly_damaging(0.611) TCGA-H7-A6C5-01 11 117267963 117267963 G T CEP164 Silent p.A1145A 0.11 TCGA-H7-A6C5-01 11 124746185 124746185 C A ROBO3 Missense_Mutation p.L870M 0.19 tolerated(0.33) benign(0.264) TCGA-H7-A6C5-01 11 126147630 126147630 G C FOXRED1 3'UTR 0.27 TCGA-H7-A6C5-01 11 47681869 47681869 G T AGBL2 Nonsense_Mutation p.C855* 0.27 TCGA-H7-A6C5-01 11 60696242 60696242 G A TMEM132A Missense_Mutation p.D226N 0.27 tolerated(0.15) benign(0.07) TCGA-H7-A6C5-01 11 64522965 64522965 C T PYGM Missense_Mutation p.M242I 0.24 deleterious(0.02) possibly_damaging(0.736) TCGA-H7-A6C5-01 11 92532028 92532028 A T FAT3 Missense_Mutation p.H1950L 0.20 benign(0.002) TCGA-H7-A6C5-01 11 92615974 92615974 G A FAT3 Missense_Mutation p.G4118S 0.29 probably_damaging(0.976) TCGA-H7-A6C5-01 12 123984019 123984019 G A RILPL1 Silent p.D175D 0.24 TCGA-H7-A6C5-01 12 15131063 15131063 A G PDE6H Silent p.P39P 0.27 TCGA-H7-A6C5-01 12 30837254 30837254 G A IPO8 Missense_Mutation p.R102W 0.04 deleterious(0.04) probably_damaging(0.925) TCGA-H7-A6C5-01 12 49443617 49443617 G A KMT2D Nonsense_Mutation p.R1252* 0.27 TCGA-H7-A6C5-01 12 6707160 6707160 G A CHD4 Nonsense_Mutation p.R598* 0.28 TCGA-H7-A6C5-01 12 78400202 78400202 C A NAV3 Missense_Mutation p.S295Y 0.27 deleterious_low_confidence(0.02) benign(0.394) TCGA-H7-A6C5-01 13 26959350 26959350 G A CDK8 Missense_Mutation p.D173N 0.51 deleterious(0.04) possibly_damaging(0.547) TCGA-H7-A6C5-01 13 27256893 27256893 C T WASF3 Missense_Mutation p.T378M 0.52 tolerated(0.22) benign(0.014) TCGA-H7-A6C5-01 14 107012995 107012995 G A IGHV3-49 Silent p.A100A 0.33 TCGA-H7-A6C5-01 14 24572907 24572907 C T PCK2 Missense_Mutation p.R553W 0.15 deleterious(0) probably_damaging(1) TCGA-H7-A6C5-01 14 29237068 29237068 C T FOXG1 Missense_Mutation p.R195W 0.34 deleterious(0.02) probably_damaging(1) TCGA-H7-A6C5-01 15 32972012 32972013 - C SCG5 Frame_Shift_Ins p.N93Qfs*13 0.26 TCGA-H7-A6C5-01 15 63637703 63637703 G A CA12 Silent p.T134T 0.21 TCGA-H7-A6C5-01 15 90172216 90172216 G T KIF7 Missense_Mutation p.H1219N 0.30 tolerated(0.13) benign(0.001) TCGA-H7-A6C5-01 16 2819133 2819133 C T SRRM2 Silent p.S2623S 0.10 TCGA-H7-A6C5-01 16 2819145 2819145 T C SRRM2 Silent p.S2627S 0.14 TCGA-H7-A6C5-01 16 4165375 4165375 C T ADCY9 Silent p.G23G 0.29 TCGA-H7-A6C5-01 16 51173850 51173850 C T SALL1 Silent p.P761P 0.18 TCGA-H7-A6C5-01 16 55706002 55706002 G A SLC6A2 Missense_Mutation p.D187N 0.24 tolerated(0.32) benign(0.262) TCGA-H7-A6C5-01 16 84211528 84211528 G C TAF1C 3'UTR 0.33 TCGA-H7-A6C5-01 16 84255844 84255844 G A KCNG4 Silent p.A513A 0.26 TCGA-H7-A6C5-01 17 27910609 27910609 C A GIT1 Missense_Mutation p.R26S 0.29 deleterious(0) probably_damaging(0.998) TCGA-H7-A6C5-01 17 49063101 49063101 C T SPAG9 Missense_Mutation p.C993Y 0.19 deleterious(0) probably_damaging(0.971) TCGA-H7-A6C5-01 17 7579311 7579311 C A TP53 Splice_Site p.X125_splice 0.41 TCGA-H7-A6C5-01 17 78319549 78319549 T G RNF213 Missense_Mutation p.F2472V 0.28 benign(0.004) TCGA-H7-A6C5-01 17 78319809 78319809 C G RNF213 Silent p.S2558S 0.26 TCGA-H7-A6C5-01 17 79982595 79982595 C T LRRC45 Silent p.A103A 0.21 TCGA-H7-A6C5-01 18 580870 580870 C T CETN1 Silent p.D154D 0.43 TCGA-H7-A6C5-01 19 13058677 13058691 GAGAAGATAGAAGCT - RAD23A In_Frame_Del p.I32_K36del 0.21 TCGA-H7-A6C5-01 19 17434359 17434364 GGGGCT - ANO8 In_Frame_Del p.S1221_P1222del 0.26 TCGA-H7-A6C5-01 19 39734470 39734470 T G IFNL3 Silent p.P162P 0.32 TCGA-H7-A6C5-01 19 39898449 39898449 G A ZFP36 Missense_Mutation p.G37S 0.33 tolerated(0.7) benign(0.004) TCGA-H7-A6C5-01 19 4054877 4054877 G A ZBTB7A Silent p.A118A 0.30 TCGA-H7-A6C5-01 19 43411907 43411907 G A PSG6 Missense_Mutation p.T269I 0.28 tolerated(0.09) possibly_damaging(0.744) TCGA-H7-A6C5-01 19 56303838 56303838 C A NLRP11 Splice_Site p.X781_splice 0.34 TCGA-H7-A6C5-01 1 111702087 111702087 G T CEPT1 Missense_Mutation p.R142I 0.26 deleterious(0) probably_damaging(0.998) TCGA-H7-A6C5-01 1 149904207 149904207 T A MTMR11 Missense_Mutation p.E334V 0.27 deleterious(0) benign(0.209) TCGA-H7-A6C5-01 1 161133693 161133693 T C USP21 Silent p.S380S 0.24 TCGA-H7-A6C5-01 1 204236637 204236637 G A PLEKHA6 Silent p.F82F 0.34 TCGA-H7-A6C5-01 1 215752352 215752352 G T KCTD3 Missense_Mutation p.S136I 0.25 tolerated(0.21) benign(0.008) TCGA-H7-A6C5-01 1 216371878 216371878 T A USH2A Missense_Mutation p.K1287I 0.27 benign(0.102) TCGA-H7-A6C5-01 1 223284505 223284505 A G TLR5 Silent p.S623S 0.41 TCGA-H7-A6C5-01 1 230401042 230401042 C T GALNT2 Missense_Mutation p.L457F 0.25 deleterious(0.02) benign(0.343) TCGA-H7-A6C5-01 1 29587213 29587213 C T PTPRU Silent p.D314D 0.24 TCGA-H7-A6C5-01 1 59248394 59248394 C A JUN Missense_Mutation p.A117S 0.32 deleterious(0) probably_damaging(0.989) TCGA-H7-A6C5-01 20 23965899 23965899 G T GGTLC1 Missense_Mutation p.A211E 0.32 tolerated(0.26) benign(0.101) TCGA-H7-A6C5-01 21 11039291 11039291 G T BAGE2 RNA 0.04 TCGA-H7-A6C5-01 21 43171260 43171260 T C RIPK4 Missense_Mutation p.Y207C 0.36 deleterious(0) benign(0.389) TCGA-H7-A6C5-01 22 20748852 20748863 GGGCCTGCCCTG - ZNF74 5'UTR 0.32 TCGA-H7-A6C5-01 22 31904325 31904325 G A SFI1 Missense_Mutation p.V19M 0.21 tolerated_low_confidence(0.19) benign(0.004) TCGA-H7-A6C5-01 22 33780180 33780180 G A LARGE Nonsense_Mutation p.Q335* 0.12 TCGA-H7-A6C5-01 22 46644182 46644182 C A CDPF1 Splice_Site p.X1_splice 0.23 TCGA-H7-A6C5-01 2 102456449 102456449 C T MAP4K4 Silent p.G314G 0.20 TCGA-H7-A6C5-01 2 121748026 121748030 CGATG - GLI2 Frame_Shift_Del p.D1513Hfs*4 0.32 TCGA-H7-A6C5-01 2 127828359 127828359 T C BIN1 Missense_Mutation p.T67A 0.21 tolerated(1) benign(0.01) TCGA-H7-A6C5-01 2 152135371 152135371 T C NMI Missense_Mutation p.Q104R 0.33 deleterious(0) probably_damaging(0.952) TCGA-H7-A6C5-01 2 15555748 15555748 T C NBAS Silent p.L953L 0.21 TCGA-H7-A6C5-01 2 167284432 167284432 G T SCN7A Missense_Mutation p.L907I 0.20 tolerated(0.08) benign(0.124) TCGA-H7-A6C5-01 2 170063536 170063536 C A LRP2 Missense_Mutation p.G2232C 0.28 probably_damaging(0.999) TCGA-H7-A6C5-01 2 179410814 179410814 C T TTN Missense_Mutation p.V31717I 0.38 TCGA-H7-A6C5-01 2 190332193 190332194 - A WDR75 Frame_Shift_Ins p.A485Sfs*7 0.20 TCGA-H7-A6C5-01 2 190332307 190332307 G A WDR75 Missense_Mutation p.V521I 0.27 tolerated(0.25) benign(0.012) TCGA-H7-A6C5-01 2 61181107 61181107 G C PUS10 Missense_Mutation p.S384C 0.21 deleterious(0) probably_damaging(0.987) TCGA-H7-A6C5-01 2 61575592 61575592 G A USP34 Silent p.D566D 0.27 TCGA-H7-A6C5-01 2 61725810 61725810 T C XPO1 Missense_Mutation p.K253E 0.27 deleterious(0) benign(0.286) TCGA-H7-A6C5-01 2 86408456 86408456 G T IMMT Missense_Mutation p.P29T 0.27 tolerated(0.74) benign(0.008) TCGA-H7-A6C5-01 2 8919829 8919829 T C KIDINS220 Missense_Mutation p.D782G 0.33 deleterious(0) probably_damaging(1) TCGA-H7-A6C5-01 3 101059042 101059042 G A SENP7 Missense_Mutation p.P752S 0.38 deleterious(0) probably_damaging(1) TCGA-H7-A6C5-01 3 108677856 108677856 G T MORC1 Missense_Mutation p.H971N 0.47 deleterious_low_confidence(0.04) benign(0.115) TCGA-H7-A6C5-01 3 118647404 118647404 G T IGSF11 Missense_Mutation p.P126T 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-H7-A6C5-01 3 127642211 127642218 ACTGTAGC - KBTBD12 Frame_Shift_Del p.T103Yfs*41 0.29 TCGA-H7-A6C5-01 3 195384951 195384951 C T AC069513.4 5'Flank 0.18 TCGA-H7-A6C5-01 3 52651282 52651282 G A PBRM1 Missense_Mutation p.S605F 0.45 deleterious(0) probably_damaging(0.97) TCGA-H7-A6C5-01 4 125591287 125591287 G A ANKRD50 Missense_Mutation p.L1049F 0.33 deleterious(0) probably_damaging(1) TCGA-H7-A6C5-01 4 151000230 151000230 A T DCLK2 Missense_Mutation p.K17N 0.24 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-H7-A6C5-01 4 175749980 175749980 A G GLRA3 5'UTR 0.28 TCGA-H7-A6C5-01 4 184174979 184174979 G A WWC2 Silent p.E341E 0.17 TCGA-H7-A6C5-01 4 187518853 187518853 C T FAT1 Silent p.S4117S 0.11 TCGA-H7-A6C5-01 4 71844867 71844867 C A MOB1B Missense_Mutation p.F149L 0.15 deleterious(0) probably_damaging(0.994) TCGA-H7-A6C5-01 5 140502218 140502218 C A PCDHB4 Missense_Mutation p.A213E 0.66 deleterious_low_confidence(0) probably_damaging(1) TCGA-H7-A6C5-01 5 154278774 154278774 G A GEMIN5 Silent p.G1037G 0.58 TCGA-H7-A6C5-01 5 176687015 176687017 TCC - NSD1 In_Frame_Del p.P1665del 0.63 TCGA-H7-A6C5-01 5 31317589 31317589 A T CDH6 Missense_Mutation p.Q540H 0.34 tolerated(0.12) possibly_damaging(0.606) TCGA-H7-A6C5-01 5 40981677 40981677 C A C7 3'UTR 0.13 TCGA-H7-A6C5-01 6 100841613 100841613 C G SIM1 Silent p.S440S 0.22 TCGA-H7-A6C5-01 6 128134040 128134040 G - THEMIS Frame_Shift_Del p.K583Sfs*32 0.22 TCGA-H7-A6C5-01 6 132032088 132032088 C T CTAGE9 Missense_Mutation p.A24T 0.45 deleterious(0.02) benign(0.233) TCGA-H7-A6C5-01 6 152949521 152949521 C A SYNE1 5'UTR 0.25 TCGA-H7-A6C5-01 6 165715178 165715178 G A C6orf118 Silent p.S211S 0.09 TCGA-H7-A6C5-01 6 29429979 29429979 G A OR2H1 Missense_Mutation p.V145M 0.34 tolerated(0.33) benign(0.363) TCGA-H7-A6C5-01 6 36043720 36043720 G A MAPK14 Nonsense_Mutation p.W197* 0.29 TCGA-H7-A6C5-01 6 38906573 38906573 G C DNAH8 Splice_Site p.X3722_splice 0.29 TCGA-H7-A6C5-01 6 46826829 46826829 C A GPR116 Missense_Mutation p.R937S 0.28 tolerated(0.24) benign(0.015) TCGA-H7-A6C5-01 6 62390885 62390885 G T KHDRBS2 Missense_Mutation p.P345T 0.36 deleterious(0) probably_damaging(0.996) TCGA-H7-A6C5-01 6 69349298 69349298 G T BAI3 Missense_Mutation p.R244M 0.24 tolerated(0.07) benign(0.084) TCGA-H7-A6C5-01 6 70610150 70610150 C A COL19A1 Missense_Mutation p.S62R 0.29 tolerated(0.93) unknown(0) TCGA-H7-A6C5-01 7 122774493 122774493 G T SLC13A1 Silent p.I301I 0.26 TCGA-H7-A6C5-01 7 21857932 21857932 G T DNAH11 Missense_Mutation p.G3563C 0.16 probably_damaging(0.986) TCGA-H7-A6C5-01 7 37924037 37924037 A G NME8 Missense_Mutation p.E376G 0.13 tolerated(0.1) benign(0.097) TCGA-H7-A6C5-01 7 51085169 51085169 C A COBL 3'UTR 0.31 TCGA-H7-A6C5-01 7 57528811 57528811 G A ZNF716 Missense_Mutation p.C215Y 0.32 deleterious(0.04) benign(0.087) TCGA-H7-A6C5-01 7 65706141 65706141 C T TPST1 Silent p.V243V 0.32 TCGA-H7-A6C5-01 7 8791187 8791187 G A NXPH1 Missense_Mutation p.D202N 0.27 tolerated(0.55) possibly_damaging(0.785) TCGA-H7-A6C5-01 7 94052415 94052415 A T COL1A2 Silent p.G850G 0.26 TCGA-H7-A6C5-01 8 101252864 101252864 G A SPAG1 Silent p.P838P 0.29 TCGA-H7-A6C5-01 8 110393597 110393597 A G PKHD1L1 Splice_Site p.X55_splice 0.27 TCGA-H7-A6C5-01 8 133196524 133196524 G T KCNQ3 Silent p.R190R 0.28 TCGA-H7-A6C5-01 8 36641910 36641910 G A KCNU1 5'UTR 0.23 TCGA-H7-A6C5-01 8 61765846 61765846 G C CHD7 Missense_Mutation p.E2188Q 0.29 benign(0.196) TCGA-H7-A6C5-01 8 89198815 89198815 C A MMP16 Missense_Mutation p.K98N 0.24 deleterious(0) benign(0.138) TCGA-H7-A6C5-01 8 93074858 93074858 G T RUNX1T1 Intron 0.29 TCGA-H7-A6C5-01 9 104449287 104449287 C T GRIN3A Missense_Mutation p.A299T 0.12 tolerated(0.44) benign(0.001) TCGA-H7-A6C5-01 9 138376659 138376659 C T PPP1R26 Silent p.L101L 0.38 TCGA-H7-A6C5-01 9 22029502 22029502 G T CDKN2B-AS1 RNA 0.34 TCGA-H7-A6C5-01 9 418112 418112 C G DOCK8 Missense_Mutation p.Q1249E 0.45 tolerated(0.4) benign(0.001) TCGA-H7-A6C5-01 9 86451951 86451951 C T KIF27 Missense_Mutation p.E1391K 0.07 deleterious_low_confidence(0.03) benign(0.133) TCGA-H7-A6C5-01 X 11314928 11314928 T C AMELX Silent p.Y28Y 0.61 TCGA-H7-A6C5-01 X 114239848 114239848 C T IL13RA2 Missense_Mutation p.R343H 0.65 tolerated(0.52) benign(0) TCGA-H7-A6C5-01 X 138689864 138689864 C T MCF2 Silent p.L568L 0.65 TCGA-H7-A6C5-01 X 150912536 150912536 G A CNGA2 Missense_Mutation p.E521K 0.67 deleterious(0) probably_damaging(0.999) TCGA-H7-A76A-01 10 16553183 16553183 G A PTER Silent p.L326L 0.14 TCGA-H7-A76A-01 10 52066848 52066848 C G SGMS1 3'UTR 0.09 TCGA-H7-A76A-01 10 55782741 55782741 C T PCDH15 Missense_Mutation p.D813N 0.13 tolerated(0.11) benign(0.217) TCGA-H7-A76A-01 10 95276763 95276763 G A CEP55 Missense_Mutation p.E251K 0.10 deleterious(0.03) possibly_damaging(0.723) TCGA-H7-A76A-01 10 98411122 98411122 G C PIK3AP1 Missense_Mutation p.P291A 0.21 tolerated(0.07) probably_damaging(1) TCGA-H7-A76A-01 10 99623701 99623701 C G GOLGA7B Silent p.L51L 0.11 TCGA-H7-A76A-01 10 99623815 99623815 C G GOLGA7B Silent p.L89L 0.08 TCGA-H7-A76A-01 11 46625092 46625092 A G HARBI1 Silent p.T346T 0.12 TCGA-H7-A76A-01 12 101493408 101493408 G A ANO4 Missense_Mutation p.E652K 0.09 tolerated(0.1) benign(0.001) TCGA-H7-A76A-01 12 11214124 11214124 T G TAS2R46 Missense_Mutation p.N257T 0.14 tolerated(0.07) benign(0.133) TCGA-H7-A76A-01 12 121947596 121947596 G A KDM2B Missense_Mutation p.S474F 0.10 deleterious(0) possibly_damaging(0.453) TCGA-H7-A76A-01 12 122079387 122079387 G C ORAI1 Silent p.L250L 0.22 TCGA-H7-A76A-01 12 125455922 125455922 C T DHX37 Missense_Mutation p.E373K 0.11 deleterious(0) probably_damaging(1) TCGA-H7-A76A-01 12 49318025 49318025 G C FKBP11 Missense_Mutation p.L100V 0.14 deleterious(0) possibly_damaging(0.899) TCGA-H7-A76A-01 12 54812814 54812814 C G ITGA5 Missense_Mutation p.G57R 0.12 tolerated(0.07) benign(0.039) TCGA-H7-A76A-01 13 26434338 26434338 G C ATP8A2 Missense_Mutation p.V988L 0.10 tolerated(0.16) benign(0.13) TCGA-H7-A76A-01 13 50586100 50586100 C G TRIM13 Silent p.L11L 0.15 TCGA-H7-A76A-01 13 50586862 50586862 C G TRIM13 Missense_Mutation p.I265M 0.22 deleterious(0.02) possibly_damaging(0.805) TCGA-H7-A76A-01 13 66879131 66879131 C T PCDH9 Missense_Mutation p.E1124K 0.13 tolerated(0.08) probably_damaging(0.968) TCGA-H7-A76A-01 14 39784884 39784884 C T CTAGE5 Intron 0.17 TCGA-H7-A76A-01 15 45007773 45007773 T - B2M Frame_Shift_Del p.L74Cfs*29 0.11 TCGA-H7-A76A-01 15 63928252 63928252 C A HERC1 Missense_Mutation p.D4108Y 0.15 probably_damaging(1) TCGA-H7-A76A-01 15 89744002 89744002 G T ABHD2 3'UTR 0.06 TCGA-H7-A76A-01 16 112635 112635 G A RHBDF1 Missense_Mutation p.S285L 0.10 tolerated(0.12) probably_damaging(0.941) TCGA-H7-A76A-01 16 2159887 2159887 C T PKD1 Missense_Mutation p.E1761K 0.14 benign(0.071) TCGA-H7-A76A-01 16 2817994 2817994 G A SRRM2 Missense_Mutation p.D2489N 0.10 probably_damaging(0.995) TCGA-H7-A76A-01 16 69783174 69783174 G C NOB1 Missense_Mutation p.S156C 0.12 deleterious(0) probably_damaging(0.95) TCGA-H7-A76A-01 17 33454292 33454292 G A FNDC8 Silent p.Q147Q 0.13 TCGA-H7-A76A-01 17 3386832 3386832 G C ASPA Missense_Mutation p.E158Q 0.11 tolerated(0.55) benign(0.229) TCGA-H7-A76A-01 17 38133323 38133323 C T GSDMA 3'UTR 0.11 TCGA-H7-A76A-01 17 41561334 41561334 G A DHX8 5'UTR 0.19 TCGA-H7-A76A-01 17 45689949 45689949 C G NPEPPS Missense_Mutation p.S740C 0.15 deleterious(0) possibly_damaging(0.84) TCGA-H7-A76A-01 17 5445209 5445209 C G NLRP1 Silent p.L889L 0.07 TCGA-H7-A76A-01 18 13885017 13885017 G T MC2R Silent p.I167I 0.10 TCGA-H7-A76A-01 18 2775763 2775763 G C SMCHD1 Missense_Mutation p.R1736T 0.26 tolerated(0.28) benign(0.307) TCGA-H7-A76A-01 18 59888614 59888614 C T KIAA1468 Intron 0.10 TCGA-H7-A76A-01 19 11350432 11350432 A T C19orf80 Missense_Mutation p.H40L 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-H7-A76A-01 19 14288488 14288488 C T LPHN1 Missense_Mutation p.E47K 0.24 tolerated(0.11) possibly_damaging(0.616) TCGA-H7-A76A-01 19 1556694 1556694 G T MEX3D Missense_Mutation p.T275N 0.09 deleterious(0) probably_damaging(0.995) TCGA-H7-A76A-01 19 19656865 19656865 C G CILP2 3'UTR 0.44 TCGA-H7-A76A-01 19 3163005 3163005 C G GNA15 Missense_Mutation p.I371M 0.13 tolerated(0.08) possibly_damaging(0.876) TCGA-H7-A76A-01 19 45406290 45406290 C T TOMM40 Missense_Mutation p.S317F 0.13 tolerated(0.33) benign(0.081) TCGA-H7-A76A-01 19 46133232 46133232 C G EML2 Missense_Mutation p.E396Q 0.09 tolerated(0.13) possibly_damaging(0.865) TCGA-H7-A76A-01 19 6040136 6040136 G A RFX2 Missense_Mutation p.A126V 0.14 tolerated(0.61) benign(0.024) TCGA-H7-A76A-01 19 8654233 8654233 C T ADAMTS10 Missense_Mutation p.R684Q 0.06 tolerated(0.11) probably_damaging(0.925) TCGA-H7-A76A-01 19 9203973 9203973 C G OR1M1 Nonsense_Mutation p.S18* 0.12 TCGA-H7-A76A-01 1 103412503 103412503 C T COL11A1 Missense_Mutation p.G1060R 0.23 unknown(0) TCGA-H7-A76A-01 1 147124425 147124425 T G ACP6 Intron 0.12 TCGA-H7-A76A-01 1 151992794 151992794 T C NBPF18P RNA 0.28 TCGA-H7-A76A-01 1 160518029 160518029 G T CD84 3'Flank 0.23 TCGA-H7-A76A-01 1 161128308 161128308 G A UFC1 3'UTR 0.09 TCGA-H7-A76A-01 1 161201081 161201081 G A NR1I3 Intron 0.13 TCGA-H7-A76A-01 1 161512778 161512778 C G FCGR3A 3'UTR 0.04 TCGA-H7-A76A-01 1 183208566 183208566 C T LAMC2 Silent p.I979I 0.15 TCGA-H7-A76A-01 1 203816649 203816649 A T ZC3H11A Silent p.A460A 0.13 TCGA-H7-A76A-01 1 247695055 247695055 G A OR2C3 Silent p.Y253Y 0.08 TCGA-H7-A76A-01 1 248308903 248308903 G A OR2M5 Missense_Mutation p.G152S 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-H7-A76A-01 1 33263385 33263385 C G YARS Missense_Mutation p.K190N 0.17 deleterious(0) probably_damaging(1) TCGA-H7-A76A-01 1 43907989 43907989 C T SZT2 Nonsense_Mutation p.R2585* 0.11 TCGA-H7-A76A-01 1 47746154 47746154 G A STIL Missense_Mutation p.S659L 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-H7-A76A-01 1 48825437 48825437 G C SPATA6 Missense_Mutation p.I305M 0.13 tolerated(0.24) benign(0.004) TCGA-H7-A76A-01 1 57161755 57161755 C G PRKAA2 Silent p.L237L 0.13 TCGA-H7-A76A-01 1 75602909 75602909 G T LHX8 Missense_Mutation p.S77I 0.12 deleterious(0.01) possibly_damaging(0.828) TCGA-H7-A76A-01 20 36869477 36869477 G A KIAA1755 Silent p.F352F 0.11 TCGA-H7-A76A-01 20 36869562 36869562 G A KIAA1755 Missense_Mutation p.S324L 0.08 deleterious(0.05) possibly_damaging(0.776) TCGA-H7-A76A-01 20 36870321 36870321 G C KIAA1755 Nonsense_Mutation p.S71* 0.10 TCGA-H7-A76A-01 20 50769807 50769807 G A ZFP64 Silent p.I308I 0.11 TCGA-H7-A76A-01 20 60587884 60587884 G A TAF4 Missense_Mutation p.S543L 0.13 benign(0.137) TCGA-H7-A76A-01 22 26695086 26695086 C T SEZ6L Silent p.C433C 0.10 TCGA-H7-A76A-01 22 45740359 45740359 G T SMC1B 3'UTR 0.11 TCGA-H7-A76A-01 22 50921228 50921228 T A ADM2 Missense_Mutation p.C115S 0.15 deleterious(0) probably_damaging(0.996) TCGA-H7-A76A-01 2 111666438 111666438 G A ACOXL Silent p.L287L 0.09 TCGA-H7-A76A-01 2 175292666 175292666 T C SCRN3 3'UTR 0.15 TCGA-H7-A76A-01 2 211018364 211018364 G A KANSL1L Missense_Mutation p.R315W 0.03 deleterious(0.01) possibly_damaging(0.655) TCGA-H7-A76A-01 2 217724240 217724240 C G TNP1 3'UTR 0.13 TCGA-H7-A76A-01 2 73680429 73680429 C G ALMS1 Missense_Mutation p.L2258V 0.15 probably_damaging(0.999) TCGA-H7-A76A-01 2 96956103 96956103 G C SNRNP200 Silent p.L901L 0.11 TCGA-H7-A76A-01 3 122399744 122399744 G A PARP14 Missense_Mutation p.G5D 0.23 tolerated(0.48) benign(0.086) TCGA-H7-A76A-01 3 192125823 192125823 G A FGF12 Missense_Mutation p.R64W 0.12 deleterious(0.01) possibly_damaging(0.881) TCGA-H7-A76A-01 3 195400709 195400709 C T SDHAP2 RNA 0.05 TCGA-H7-A76A-01 3 196669324 196669324 C T NCBP2 Silent p.L17L 0.14 TCGA-H7-A76A-01 3 46307214 46307214 G C CCR3 Missense_Mutation p.E210Q 0.13 tolerated(0.46) benign(0.009) TCGA-H7-A76A-01 3 50602922 50602922 G A C3orf18 Missense_Mutation p.T70M 0.26 deleterious(0) probably_damaging(0.988) TCGA-H7-A76A-01 4 121616407 121616407 C T PRDM5 Silent p.L584L 0.12 TCGA-H7-A76A-01 4 76725349 76725349 C G USO1 Silent p.L692L 0.27 TCGA-H7-A76A-01 4 79350375 79350375 C T FRAS1 Missense_Mutation p.S1613F 0.24 benign(0.005) TCGA-H7-A76A-01 4 96166282 96166282 C T UNC5C Nonsense_Mutation p.W263* 0.15 TCGA-H7-A76A-01 5 178044413 178044413 G C CLK4 Missense_Mutation p.S136C 0.13 deleterious(0.02) possibly_damaging(0.653) TCGA-H7-A76A-01 5 19591191 19591191 C T CDH18 Missense_Mutation p.R325K 0.14 tolerated(0.09) benign(0.004) TCGA-H7-A76A-01 5 2755183 2755183 C T C5orf38 3'UTR 0.07 TCGA-H7-A76A-01 5 35991318 35991318 G A UGT3A1 Silent p.L9L 0.12 TCGA-H7-A76A-01 7 100365499 100365499 C T ZAN Missense_Mutation p.R1636W 0.14 unknown(0) TCGA-H7-A76A-01 7 104703816 104703816 C T KMT2E Missense_Mutation p.R69C 0.11 deleterious(0) possibly_damaging(0.689) TCGA-H7-A76A-01 7 138529060 138529060 A G KIAA1549 Splice_Site p.X1818_splice 0.14 TCGA-H7-A76A-01 7 97617777 97617777 G A OCM2 Missense_Mutation p.R49W 0.13 deleterious(0.04) possibly_damaging(0.707) TCGA-H7-A76A-01 8 143956410 143956410 C T CYP11B1 Missense_Mutation p.R454H 0.24 deleterious(0) probably_damaging(0.969) TCGA-H7-A76A-01 8 145579649 145579649 C T FBXL6 Missense_Mutation p.R484Q 0.17 tolerated(0.09) benign(0.391) TCGA-H7-A76A-01 8 37730676 37730676 C T RAB11FIP1 Silent p.A548A 0.12 TCGA-H7-A76A-01 8 42229169 42229169 C T POLB Silent p.S334S 0.08 TCGA-H7-A76A-01 8 49987926 49987926 C G C8orf22 3'UTR 0.21 TCGA-H7-A76A-01 8 59520336 59520336 T C NSMAF Missense_Mutation p.M282V 0.12 deleterious(0.02) benign(0.205) TCGA-H7-A76A-01 9 18753367 18753367 G A ADAMTSL1 Missense_Mutation p.C693Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-H7-A76A-01 9 22451531 22451531 C T DMRTA1 Missense_Mutation p.S379L 0.12 deleterious(0.02) benign(0.163) TCGA-HD-7229-01 10 70546361 70546361 A G CCAR1 Missense_Mutation p.Y931C 0.31 deleterious(0) unknown(0) TCGA-HD-7229-01 10 76970912 76970912 T G VDAC2 5'UTR 0.27 TCGA-HD-7229-01 11 103908268 103908268 C A DDI1 Missense_Mutation p.Q240K 0.15 tolerated(0.06) benign(0.262) TCGA-HD-7229-01 11 106888551 106888551 C G GUCY1A2 Missense_Mutation p.R77S 0.29 tolerated(0.13) benign(0.037) TCGA-HD-7229-01 11 111899661 111899661 C G DLAT Missense_Mutation p.H218D 0.27 deleterious(0) probably_damaging(0.999) TCGA-HD-7229-01 11 118922623 118922623 C T HYOU1 Missense_Mutation p.A416T 0.52 deleterious(0.03) possibly_damaging(0.844) TCGA-HD-7229-01 11 1618959 1618959 C A KRTAP5-2 Missense_Mutation p.Q174H 0.18 deleterious_low_confidence(0) unknown(0) TCGA-HD-7229-01 11 18113850 18113850 C A SAAL1 Missense_Mutation p.G119C 0.32 deleterious(0) probably_damaging(0.997) TCGA-HD-7229-01 11 399010 399010 G A PKP3 Missense_Mutation p.V363M 0.12 tolerated(0.26) benign(0.019) TCGA-HD-7229-01 11 45950253 45950253 C T GYLTL1B Missense_Mutation p.R675C 0.27 deleterious(0) probably_damaging(0.953) TCGA-HD-7229-01 11 46765612 46765612 C G CKAP5 Missense_Mutation p.L2020F 0.26 deleterious(0.01) probably_damaging(0.958) TCGA-HD-7229-01 11 552187 552187 T A LRRC56 Missense_Mutation p.F379Y 0.22 tolerated(0.16) benign(0.034) TCGA-HD-7229-01 11 55322294 55322294 T A OR4C15 Missense_Mutation p.M171K 0.51 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-HD-7229-01 11 56511135 56511135 C T OR9G4 Silent p.L51L 0.22 TCGA-HD-7229-01 11 57259321 57259321 G A SLC43A1 Missense_Mutation p.R296C 0.19 tolerated(0.22) benign(0.243) TCGA-HD-7229-01 11 57310254 57310254 C T SMTNL1 Missense_Mutation p.P65S 0.37 tolerated_low_confidence(0.07) benign(0.037) TCGA-HD-7229-01 11 57982857 57982864 TTGTGGGT - OR1S1 Frame_Shift_Del p.V215Ifs*64 0.10 TCGA-HD-7229-01 11 611692 611692 C T PHRF1 Missense_Mutation p.A1621V 0.11 deleterious(0) possibly_damaging(0.873) TCGA-HD-7229-01 11 64033975 64033975 C G PLCB3 Missense_Mutation p.T1122R 0.15 tolerated(0.72) probably_damaging(0.958) TCGA-HD-7229-01 11 64109596 64109596 G C CCDC88B Missense_Mutation p.R269P 0.31 deleterious(0) probably_damaging(0.988) TCGA-HD-7229-01 11 65486406 65486406 A C KAT5 Missense_Mutation p.N496T 0.26 deleterious(0) possibly_damaging(0.854) TCGA-HD-7229-01 11 65547195 65547195 G A AP5B1 Nonsense_Mutation p.R257* 0.07 TCGA-HD-7229-01 11 6654065 6654065 G A DCHS1 Missense_Mutation p.A893V 0.11 tolerated(1) benign(0.002) TCGA-HD-7229-01 11 67048572 67048572 G C ADRBK1 Missense_Mutation p.M188I 0.25 tolerated(0.08) benign(0.007) TCGA-HD-7229-01 11 76255467 76255467 G A C11orf30 Silent p.P958P 0.22 TCGA-HD-7229-01 11 86270821 86270821 G C ME3 Missense_Mutation p.H76Q 0.20 tolerated(0.12) probably_damaging(0.943) TCGA-HD-7229-01 11 95569429 95569429 G A MTMR2 Silent p.F551F 0.12 TCGA-HD-7229-01 11 9769601 9769601 G C SWAP70 Missense_Mutation p.E518Q 0.24 tolerated(0.34) benign(0.028) TCGA-HD-7229-01 12 111993687 111993687 C A ATXN2 Silent p.T256T 0.19 TCGA-HD-7229-01 12 113744331 113744331 C G SLC8B1 Silent p.A487A 0.07 TCGA-HD-7229-01 12 117923489 117923489 T C KSR2 Missense_Mutation p.K743E 0.18 deleterious(0) probably_damaging(0.99) TCGA-HD-7229-01 12 49523424 49523424 C G TUBA1B Missense_Mutation p.G29R 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-HD-7229-01 12 53069099 53069099 C A KRT1 Missense_Mutation p.G605C 0.18 deleterious_low_confidence(0) unknown(0) TCGA-HD-7229-01 12 53208022 53208022 C T KRT4 5'UTR 0.30 TCGA-HD-7229-01 12 57145981 57145981 T A PRIM1 Silent p.G34G 0.42 TCGA-HD-7229-01 12 81657084 81657084 C A PPFIA2 Missense_Mutation p.G1214V 0.28 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-HD-7229-01 12 88560138 88560138 C - TMTC3 Frame_Shift_Del p.P277Lfs*5 0.21 TCGA-HD-7229-01 12 98987826 98987826 G C SLC25A3 Missense_Mutation p.D24H 0.29 tolerated_low_confidence(0.08) benign(0.01) TCGA-HD-7229-01 13 110831718 110831718 G A COL4A1 Silent p.P748P 0.21 TCGA-HD-7229-01 13 111090996 111090996 T A COL4A2 Missense_Mutation p.M298K 0.29 benign(0.316) TCGA-HD-7229-01 13 36788722 36788722 C T SOHLH2 Intron 0.54 TCGA-HD-7229-01 13 38164592 38164592 A G POSTN Missense_Mutation p.S120P 0.24 deleterious(0) probably_damaging(0.999) TCGA-HD-7229-01 13 42393507 42393507 G A VWA8 Silent p.I572I 0.26 TCGA-HD-7229-01 13 53422221 53422221 C T PCDH8 Silent p.R117R 0.34 TCGA-HD-7229-01 13 67801103 67801103 A T PCDH9 Silent p.T490T 0.31 TCGA-HD-7229-01 13 99061621 99061621 G T FARP1 Nonsense_Mutation p.E482* 0.05 TCGA-HD-7229-01 14 105936520 105936520 G A MTA1 Missense_Mutation p.V706I 0.28 tolerated(0.35) benign(0.066) TCGA-HD-7229-01 14 74876129 74876129 C T SYNDIG1L Missense_Mutation p.G107R 0.31 tolerated(0.33) benign(0.022) TCGA-HD-7229-01 15 26828523 26828523 C T GABRB3 Missense_Mutation p.R167K 0.28 tolerated(0.27) probably_damaging(0.998) TCGA-HD-7229-01 15 42457994 42457994 C T VPS39 Silent p.P567P 0.16 TCGA-HD-7229-01 15 52672101 52672101 C G MYO5A Missense_Mutation p.D673H 0.25 deleterious(0) probably_damaging(0.995) TCGA-HD-7229-01 15 64204146 64204146 C T DAPK2 Silent p.S331S 0.27 TCGA-HD-7229-01 15 73616247 73616247 G C HCN4 Silent p.L729L 0.25 TCGA-HD-7229-01 15 75641450 75641450 C G NEIL1 Silent p.P68P 0.23 TCGA-HD-7229-01 16 23498078 23498078 C G GGA2 Missense_Mutation p.E205Q 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-HD-7229-01 16 30393647 30393647 G C SEPT1 Missense_Mutation p.L20V 0.22 benign(0.044) TCGA-HD-7229-01 16 4714767 4714767 G T MGRN1 Nonsense_Mutation p.E207* 0.22 TCGA-HD-7229-01 16 4745024 4745024 C G NUDT16L1 Missense_Mutation p.F160L 0.15 deleterious(0) possibly_damaging(0.667) TCGA-HD-7229-01 16 56503929 56503929 G A OGFOD1 Silent p.T305T 0.20 TCGA-HD-7229-01 16 67487539 67487539 G A ATP6V0D1 Silent p.I70I 0.31 TCGA-HD-7229-01 16 67578271 67578271 G A FAM65A Silent p.T910T 0.06 TCGA-HD-7229-01 16 69965757 69965757 G A WWP2 Missense_Mutation p.R549H 0.23 deleterious(0.03) probably_damaging(0.981) TCGA-HD-7229-01 16 80638305 80638305 C T CDYL2 Missense_Mutation p.D501N 0.25 tolerated(0.92) benign(0.009) TCGA-HD-7229-01 16 81193337 81193337 G A PKD1L2 RNA 0.23 TCGA-HD-7229-01 16 84132678 84132678 C G MBTPS1 Missense_Mutation p.R134P 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-HD-7229-01 17 16638738 16638738 G A CCDC144A Silent p.L1051L 0.28 TCGA-HD-7229-01 17 1936810 1936810 C T DPH1 Missense_Mutation p.R30W 0.26 deleterious(0) probably_damaging(0.993) TCGA-HD-7229-01 17 2597272 2597272 G C CLUH Nonsense_Mutation p.Y1012* 0.23 TCGA-HD-7229-01 17 41898342 41898343 - GC MPP3 Frame_Shift_Ins p.R257Afs*8 0.27 TCGA-HD-7229-01 17 43180413 43180413 C T NMT1 Missense_Mutation p.T363M 0.24 deleterious(0.02) probably_damaging(0.95) TCGA-HD-7229-01 17 43923892 43923892 C T SPPL2C Silent p.A540A 0.36 TCGA-HD-7229-01 17 44060865 44060865 C A MAPT Missense_Mutation p.S232Y 0.55 deleterious(0.03) probably_damaging(0.971) TCGA-HD-7229-01 17 53848541 53848541 A G PCTP Missense_Mutation p.R112G 0.30 deleterious(0) probably_damaging(1) TCGA-HD-7229-01 17 62892563 62892563 C G LRRC37A3 Missense_Mutation p.E271D 0.31 tolerated(0.07) possibly_damaging(0.584) TCGA-HD-7229-01 17 7259577 7259578 CG - TMEM95 Frame_Shift_Del p.R139Kfs*76 0.25 TCGA-HD-7229-01 17 7534579 7534579 G A SHBG Missense_Mutation p.R152H 0.22 tolerated(0.56) benign(0.009) TCGA-HD-7229-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.52 deleterious(0) probably_damaging(1) TCGA-HD-7229-01 17 79478626 79478626 C A ACTG1 Silent p.P130P 0.36 TCGA-HD-7229-01 17 902756 902756 G A TIMM22 Missense_Mutation p.R147Q 0.26 deleterious(0.03) benign(0.371) TCGA-HD-7229-01 18 11851736 11851736 G T CHMP1B Missense_Mutation p.A76S 0.30 tolerated(0.16) benign(0.323) TCGA-HD-7229-01 18 57569886 57569889 AGTC - PMAIP1 Frame_Shift_Del p.V23Sfs*13 0.23 TCGA-HD-7229-01 19 10090691 10090691 G A COL5A3 Silent p.F879F 0.26 TCGA-HD-7229-01 19 1084297 1084297 G A HMHA1 Missense_Mutation p.E1022K 0.37 tolerated_low_confidence(0.27) benign(0.006) TCGA-HD-7229-01 19 10923011 10923011 T C DNM2 Silent p.F543F 0.18 TCGA-HD-7229-01 19 1105487 1105487 C T GPX4 Missense_Mutation p.P101L 0.24 deleterious(0) probably_damaging(1) TCGA-HD-7229-01 19 15299887 15299887 C T NOTCH3 Missense_Mutation p.D431N 0.37 tolerated(0.16) probably_damaging(1) TCGA-HD-7229-01 19 16613911 16613911 C T C19orf44 Silent p.S265S 0.37 TCGA-HD-7229-01 19 19313872 19313872 C G NR2C2AP 5'UTR 0.17 TCGA-HD-7229-01 19 20229606 20229606 C G ZNF90 Missense_Mutation p.H415D 0.44 deleterious(0) probably_damaging(0.913) TCGA-HD-7229-01 19 36120554 36120554 C G RBM42 Missense_Mutation p.I87M 0.18 deleterious(0) probably_damaging(0.996) TCGA-HD-7229-01 19 39361379 39361379 G A RINL Silent p.I285I 0.31 TCGA-HD-7229-01 19 39439299 39439299 C A CTC-360G5.8 Missense_Mutation p.E28D 0.30 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-HD-7229-01 19 7831597 7831597 C G CLEC4M Nonsense_Mutation p.Y280* 0.18 TCGA-HD-7229-01 1 109793107 109793109 CCG - CELSR2 In_Frame_Del p.P136del 0.35 TCGA-HD-7229-01 1 12939152 12939152 T C PRAMEF4 3'UTR 0.24 TCGA-HD-7229-01 1 169390628 169390628 T C CCDC181 Silent p.E347E 0.24 TCGA-HD-7229-01 1 19209162 19209162 C G ALDH4A1 Intron 0.24 TCGA-HD-7229-01 1 201750276 201750276 G A NAV1 Missense_Mutation p.R501Q 0.30 deleterious(0) possibly_damaging(0.899) TCGA-HD-7229-01 1 20440744 20440744 C G PLA2G2D Missense_Mutation p.G101R 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-HD-7229-01 1 216680338 216680338 T C ESRRG Silent p.L452L 0.16 TCGA-HD-7229-01 1 22178186 22178186 G A HSPG2 Silent p.A2337A 0.26 TCGA-HD-7229-01 1 223567884 223567884 C T C1orf65 Missense_Mutation p.P356L 0.35 tolerated(0.2) benign(0.003) TCGA-HD-7229-01 1 22974125 22974125 C T C1QC Missense_Mutation p.T196M 0.26 tolerated(0.57) benign(0.011) TCGA-HD-7229-01 1 242287898 242287898 G C PLD5 Missense_Mutation p.L269V 0.19 tolerated(0.43) possibly_damaging(0.622) TCGA-HD-7229-01 1 24434494 24434494 G A MYOM3 Silent p.S77S 0.24 TCGA-HD-7229-01 1 27276605 27276605 G A C1orf172 Silent p.T384T 0.24 TCGA-HD-7229-01 1 41979227 41979227 C T HIVEP3 Missense_Mutation p.A1889T 0.24 benign(0) TCGA-HD-7229-01 1 44461731 44461731 C G CCDC24 Missense_Mutation p.Q275E 0.29 tolerated(0.21) benign(0.036) TCGA-HD-7229-01 1 52249590 52249590 C T OSBPL9 Missense_Mutation p.S516L 0.37 deleterious(0) probably_damaging(0.945) TCGA-HD-7229-01 1 55167769 55167769 G C MROH7 Missense_Mutation p.E1098Q 0.30 tolerated(0.08) probably_damaging(0.988) TCGA-HD-7229-01 1 66723334 66723334 G A PDE4B Missense_Mutation p.G161S 0.25 deleterious(0.04) benign(0.271) TCGA-HD-7229-01 1 78340631 78340631 G A FAM73A Missense_Mutation p.R594H 0.22 deleterious(0) probably_damaging(1) TCGA-HD-7229-01 1 89651007 89651007 A G GBP4 Missense_Mutation p.M618T 0.17 tolerated(0.07) benign(0) TCGA-HD-7229-01 20 13763380 13763380 C T ESF1 Missense_Mutation p.G136E 0.13 tolerated_low_confidence(0.98) benign(0.039) TCGA-HD-7229-01 20 17932146 17932146 T G SNX5 Missense_Mutation p.K203Q 0.42 deleterious(0.01) possibly_damaging(0.903) TCGA-HD-7229-01 20 2847312 2847312 A T VPS16 3'UTR 0.14 TCGA-HD-7229-01 20 31958354 31958354 C G CDK5RAP1 Missense_Mutation p.R448P 0.21 deleterious(0.01) possibly_damaging(0.823) TCGA-HD-7229-01 21 44839014 44839014 T A SIK1 Missense_Mutation p.Q450L 0.45 tolerated(0.11) benign(0.003) TCGA-HD-7229-01 22 19398284 19398284 C T HIRA Missense_Mutation p.V19I 0.23 tolerated(0.66) benign(0.116) TCGA-HD-7229-01 22 38694868 38694868 G A CSNK1E Missense_Mutation p.R270C 0.24 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-HD-7229-01 22 41626178 41626178 G T L3MBTL2 Missense_Mutation p.V681L 0.22 tolerated_low_confidence(0.34) benign(0) TCGA-HD-7229-01 2 141294273 141294273 T C LRP1B Missense_Mutation p.N2507D 0.13 possibly_damaging(0.621) TCGA-HD-7229-01 2 141571249 141571249 T G LRP1B Missense_Mutation p.K1779T 0.38 benign(0.403) TCGA-HD-7229-01 2 168102128 168102128 G A XIRP2 Missense_Mutation p.S1409N 0.12 benign(0.06) TCGA-HD-7229-01 2 188368459 188368459 C T TFPI Missense_Mutation p.A13T 0.23 tolerated(0.47) benign(0.005) TCGA-HD-7229-01 2 204291988 204291988 C G ABI2 Missense_Mutation p.D447E 0.36 tolerated(0.15) possibly_damaging(0.526) TCGA-HD-7229-01 2 219747032 219747032 G A WNT10A Missense_Mutation p.G88D 0.27 deleterious(0.03) probably_damaging(1) TCGA-HD-7229-01 2 232393435 232393435 G C NMUR1 Silent p.L99L 0.35 TCGA-HD-7229-01 2 234368410 234368410 C T DGKD Missense_Mutation p.T901M 0.30 tolerated(0.08) benign(0.26) TCGA-HD-7229-01 2 27499677 27499677 C A DNAJC5G Silent p.G27G 0.48 TCGA-HD-7229-01 2 46378288 46378288 G T PRKCE Missense_Mutation p.D614Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-HD-7229-01 2 77745481 77745481 G T LRRTM4 Missense_Mutation p.P505H 0.32 deleterious(0) probably_damaging(0.965) TCGA-HD-7229-01 2 90139503 90139503 G A IGKV1D-16 Missense_Mutation p.D92N 0.19 deleterious(0.02) benign(0.17) TCGA-HD-7229-01 3 130748710 130748710 G C NEK11 Missense_Mutation p.R53P 0.30 tolerated(0.14) benign(0.006) TCGA-HD-7229-01 3 137717874 137717874 G A CLDN18 Missense_Mutation p.R55Q 0.26 tolerated(0.62) benign(0.009) TCGA-HD-7229-01 3 164754249 164754249 C A SI Nonsense_Mutation p.G815* 0.26 TCGA-HD-7229-01 3 167031903 167031903 A C ZBBX Missense_Mutation p.C426G 0.05 tolerated(0.32) benign(0.366) TCGA-HD-7229-01 3 172365793 172365793 C G NCEH1 Missense_Mutation p.D116H 0.13 deleterious(0) probably_damaging(1) TCGA-HD-7229-01 3 186459996 186459996 C T KNG1 Missense_Mutation p.S604L 0.22 deleterious(0) possibly_damaging(0.518) TCGA-HD-7229-01 3 49924732 49924732 G A MST1R 3'UTR 0.34 TCGA-HD-7229-01 4 113462064 113462064 T A C4orf21 Silent p.T1941T 0.50 TCGA-HD-7229-01 4 145039887 145039887 G A GYPA Missense_Mutation p.A84V 0.68 tolerated(1) benign(0.002) TCGA-HD-7229-01 4 156724819 156724819 C T GUCY1B3 Missense_Mutation p.P486L 0.53 deleterious(0) possibly_damaging(0.847) TCGA-HD-7229-01 4 164247590 164247590 C A NPY1R Missense_Mutation p.M39I 0.56 tolerated(0.42) benign(0.001) TCGA-HD-7229-01 4 5586437 5586437 G C EVC2 Missense_Mutation p.S990R 0.13 tolerated(0.11) possibly_damaging(0.548) TCGA-HD-7229-01 4 77660159 77660159 C G SHROOM3 Missense_Mutation p.S278C 0.21 tolerated(0.13) possibly_damaging(0.817) TCGA-HD-7229-01 5 127614517 127614517 G C FBN2 Silent p.L2385L 0.31 TCGA-HD-7229-01 5 134782555 134782555 G A C5orf20 Nonsense_Mutation p.R82* 0.26 TCGA-HD-7229-01 5 14477072 14477072 C G TRIO Missense_Mutation p.H2051Q 0.15 benign(0.271) TCGA-HD-7229-01 5 159665718 159665718 A C FABP6 3'UTR 0.31 TCGA-HD-7229-01 5 19483518 19483518 C A CDH18 Nonsense_Mutation p.E592* 0.23 TCGA-HD-7229-01 6 107824913 107824913 A C SOBP Missense_Mutation p.K50T 0.15 deleterious(0) probably_damaging(0.999) TCGA-HD-7229-01 6 116949485 116949485 G C RSPH4A Missense_Mutation p.E539Q 0.14 deleterious(0.02) probably_damaging(0.968) TCGA-HD-7229-01 6 117086702 117086702 C T FAM162B Missense_Mutation p.R13H 0.54 tolerated(0.14) benign(0.392) TCGA-HD-7229-01 6 117246774 117246774 G A RFX6 Missense_Mutation p.A613T 0.32 tolerated(0.37) benign(0.066) TCGA-HD-7229-01 6 118786459 118786459 A - CEP85L 3'UTR 0.22 TCGA-HD-7229-01 6 129637001 129637001 G C LAMA2 Missense_Mutation p.R1277P 0.66 deleterious(0) probably_damaging(0.939) TCGA-HD-7229-01 6 15517481 15517481 G C JARID2 Missense_Mutation p.L1180F 0.22 deleterious(0.03) possibly_damaging(0.828) TCGA-HD-7229-01 6 159050835 159050835 G A TMEM181 Silent p.S559S 0.48 TCGA-HD-7229-01 6 161575210 161575210 G A AGPAT4 Missense_Mutation p.H161Y 0.38 deleterious(0.01) benign(0.217) TCGA-HD-7229-01 6 167570533 167570533 T C GPR31 Missense_Mutation p.T263A 0.43 tolerated(1) benign(0.004) TCGA-HD-7229-01 6 169640559 169640559 C G THBS2 Silent p.T340T 0.38 TCGA-HD-7229-01 6 18208370 18208370 G T KDM1B Missense_Mutation p.C368F 0.18 deleterious(0.03) unknown(0) TCGA-HD-7229-01 6 27834778 27834778 G A HIST1H1B Missense_Mutation p.A177V 0.32 tolerated(0.19) unknown(0) TCGA-HD-7229-01 6 31514269 31514269 G T ATP6V1G2 Missense_Mutation p.A23E 0.28 tolerated(1) possibly_damaging(0.459) TCGA-HD-7229-01 6 43323114 43323114 G A ZNF318 Missense_Mutation p.S653L 0.25 possibly_damaging(0.504) TCGA-HD-7229-01 6 46977268 46977268 A C GPR110 Missense_Mutation p.L635V 0.45 deleterious(0) probably_damaging(0.969) TCGA-HD-7229-01 6 7579931 7579931 G A DSP Missense_Mutation p.E1170K 0.38 probably_damaging(0.991) TCGA-HD-7229-01 6 90384055 90384055 G T MDN1 Missense_Mutation p.L4339I 0.47 benign(0.021) TCGA-HD-7229-01 7 128119472 128119472 C T METTL2B Missense_Mutation p.P155S 0.08 tolerated(0.58) benign(0.004) TCGA-HD-7229-01 7 130139737 130139737 G A MEST Missense_Mutation p.R186H 0.22 tolerated(0.82) benign(0.002) TCGA-HD-7229-01 7 150417387 150417387 G A GIMAP1 Missense_Mutation p.E99K 0.30 tolerated(1) benign(0.004) TCGA-HD-7229-01 7 151073852 151073852 G C NUB1 Missense_Mutation p.E566Q 0.27 tolerated(0.41) benign(0.016) TCGA-HD-7229-01 7 151573787 151573787 T C PRKAG2 5'UTR 0.45 TCGA-HD-7229-01 7 151945611 151945611 A C KMT2C Missense_Mutation p.H636Q 0.31 benign(0.004) TCGA-HD-7229-01 7 15652017 15652017 A G MEOX2 Silent p.L304L 0.05 TCGA-HD-7229-01 7 21639563 21639563 G T DNAH11 Silent p.P942P 0.70 TCGA-HD-7229-01 7 4839063 4839063 C T RADIL Silent p.A1058A 0.72 TCGA-HD-7229-01 7 82583946 82583946 G - PCLO Frame_Shift_Del p.S2108* 0.15 TCGA-HD-7229-01 7 91630769 91630769 A T AKAP9 Missense_Mutation p.K513M 0.25 possibly_damaging(0.779) TCGA-HD-7229-01 8 124204207 124204207 C T FAM83A Silent p.L215L 0.18 TCGA-HD-7229-01 8 124333248 124333248 T G ATAD2 3'UTR 0.38 TCGA-HD-7229-01 8 139163587 139163587 A T FAM135B Missense_Mutation p.F1044Y 0.43 deleterious(0.02) probably_damaging(0.984) TCGA-HD-7229-01 8 144996309 144996309 A G PLEC Silent p.H2697H 0.70 TCGA-HD-7229-01 8 2092950 2092950 A T MYOM2 3'UTR 0.33 TCGA-HD-7229-01 8 97321825 97321825 G C PTDSS1 Missense_Mutation p.V350L 0.10 tolerated(0.26) probably_damaging(0.999) TCGA-HD-7229-01 9 107288722 107288722 A G OR13C4 Missense_Mutation p.F257L 0.63 deleterious(0.02) benign(0.303) TCGA-HD-7229-01 9 113173432 113173432 C T SVEP1 Missense_Mutation p.E2187K 0.27 possibly_damaging(0.853) TCGA-HD-7229-01 9 131397505 131397505 G A WDR34 Missense_Mutation p.R283C 0.67 deleterious(0.04) benign(0.035) TCGA-HD-7229-01 9 34125196 34125196 C G DCAF12 Missense_Mutation p.R53P 0.25 deleterious(0) probably_damaging(0.997) TCGA-HD-7229-01 X 129771269 129771269 T G ENOX2 Missense_Mutation p.R444S 0.59 tolerated(0.32) benign(0.001) TCGA-HD-7229-01 X 23956699 23956699 C A CXorf58 Missense_Mutation p.P274H 0.53 deleterious(0) possibly_damaging(0.908) TCGA-HD-7229-01 X 3592789 3592789 C G PRKX Missense_Mutation p.R62P 0.50 deleterious(0.02) possibly_damaging(0.595) TCGA-HD-7229-01 X 44922694 44922694 C T KDM6A Nonsense_Mutation p.R519* 0.51 TCGA-HD-7229-01 X 53458304 53458304 C T HSD17B10 3'UTR 0.67 TCGA-HD-7229-01 X 70823685 70823685 G C ACRC Silent p.S186S 0.56 TCGA-HD-7753-01 10 119798612 119798612 C T RAB11FIP2 Missense_Mutation p.G379E 0.19 tolerated(0.27) possibly_damaging(0.572) TCGA-HD-7753-01 10 126370453 126370453 G C FAM53B Missense_Mutation p.T210S 0.17 tolerated(0.63) benign(0.001) TCGA-HD-7753-01 10 134147162 134147162 C T LRRC27 Missense_Mutation p.S45F 0.15 deleterious(0) possibly_damaging(0.831) TCGA-HD-7753-01 10 75533635 75533636 - T FUT11 Intron 0.28 TCGA-HD-7753-01 10 76910800 76910800 A G SAMD8 Missense_Mutation p.I172V 0.23 tolerated(0.24) benign(0.088) TCGA-HD-7753-01 11 114568901 114568901 G T NXPE2 Missense_Mutation p.E89D 0.46 tolerated(0.05) benign(0.292) TCGA-HD-7753-01 11 124007741 124007741 G T VWA5A Missense_Mutation p.A549S 0.31 deleterious(0.01) possibly_damaging(0.795) TCGA-HD-7753-01 11 27390526 27390527 - AGAAATCA LGR4 Nonsense_Mutation p.V582* 0.22 TCGA-HD-7753-01 11 49227672 49227672 A G FOLH1 Silent p.N57N 0.39 TCGA-HD-7753-01 11 61511763 61511763 C G DAGLA Silent p.A977A 0.22 TCGA-HD-7753-01 11 66113556 66113556 C G B3GNT1 Missense_Mutation p.L404F 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-HD-7753-01 12 116421091 116421091 T C MED13L Missense_Mutation p.I1596V 0.24 tolerated(0.56) unknown(0) TCGA-HD-7753-01 12 120584869 120584869 A C GCN1L1 Missense_Mutation p.L1645R 0.36 probably_damaging(0.999) TCGA-HD-7753-01 12 123095404 123095404 A G KNTC1 Missense_Mutation p.Y1860C 0.31 tolerated(0.06) possibly_damaging(0.759) TCGA-HD-7753-01 12 44605082 44605082 A G TMEM117 Missense_Mutation p.M174V 0.15 tolerated(0.43) benign(0.062) TCGA-HD-7753-01 12 56481413 56481413 A T ERBB3 Missense_Mutation p.E200D 0.23 tolerated(1) benign(0) TCGA-HD-7753-01 12 58121034 58121034 G A AGAP2-AS1 Missense_Mutation p.E87K 0.09 benign(0) TCGA-HD-7753-01 12 7639150 7639150 G A CD163 Silent p.H801H 0.28 TCGA-HD-7753-01 13 29600957 29600957 G A MTUS2 Missense_Mutation p.V718I 0.44 tolerated(0.28) benign(0.217) TCGA-HD-7753-01 13 36909740 36909740 C A SPG20 Missense_Mutation p.Q76H 0.51 deleterious(0) probably_damaging(0.98) TCGA-HD-7753-01 13 53421763 53421763 G C PCDH8 Missense_Mutation p.A270G 0.50 deleterious(0.01) probably_damaging(0.982) TCGA-HD-7753-01 13 88328847 88328847 G T SLITRK5 Missense_Mutation p.A402S 0.49 tolerated(1) benign(0.003) TCGA-HD-7753-01 14 23450500 23450506 GCATCCG - AJUBA Frame_Shift_Del p.R324Gfs*84 0.13 TCGA-HD-7753-01 14 74428218 74428218 T A COQ6 Missense_Mutation p.D385E 0.29 deleterious(0) probably_damaging(1) TCGA-HD-7753-01 15 25415736 25415736 C - SNORD115-3 5'Flank 0.11 TCGA-HD-7753-01 15 28446658 28446659 - T HERC2 Frame_Shift_Ins p.R2554Tfs*3 0.30 TCGA-HD-7753-01 15 50935734 50935734 T C TRPM7 Missense_Mutation p.Y113C 0.21 deleterious(0.04) probably_damaging(0.993) TCGA-HD-7753-01 15 67786666 67786666 A G IQCH Missense_Mutation p.I978V 0.21 deleterious(0.02) possibly_damaging(0.47) TCGA-HD-7753-01 15 81282115 81282115 C T MESDC2 Nonsense_Mutation p.W6* 0.21 TCGA-HD-7753-01 15 92671678 92671678 A T SLCO3A1 Missense_Mutation p.I491F 0.28 deleterious(0.01) possibly_damaging(0.511) TCGA-HD-7753-01 15 93007600 93007600 C T ST8SIA2 Silent p.C371C 0.31 TCGA-HD-7753-01 16 21078616 21078616 A G DNAH3 Missense_Mutation p.L1169P 0.41 deleterious(0) probably_damaging(0.998) TCGA-HD-7753-01 16 4432380 4432381 - A VASN Frame_Shift_Ins p.S502Ifs*4 0.24 TCGA-HD-7753-01 16 53358379 53358379 A G CHD9 Missense_Mutation p.R2740G 0.31 unknown(0) TCGA-HD-7753-01 17 15620349 15620349 C T ZNF286A Silent p.P437P 0.40 TCGA-HD-7753-01 17 30372816 30372816 C T LRRC37B Silent p.L741L 0.17 TCGA-HD-7753-01 17 36485312 36485312 C A GPR179 Silent p.P1380P 0.22 TCGA-HD-7753-01 17 37564173 37564173 G A MED1 Missense_Mutation p.P1434L 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-HD-7753-01 17 38711204 38711204 G A CCR7 Silent p.D309D 0.21 TCGA-HD-7753-01 17 3921231 3921231 T A ZZEF1 Missense_Mutation p.I2514L 0.21 tolerated(0.07) benign(0.317) TCGA-HD-7753-01 17 5042664 5042664 G A USP6 Missense_Mutation p.R398Q 0.12 tolerated_low_confidence(0.22) benign(0.238) TCGA-HD-7753-01 17 60767596 60767596 G T MRC2 Silent p.R1274R 0.33 TCGA-HD-7753-01 17 61432352 61432352 A G TANC2 Missense_Mutation p.Y654C 0.31 deleterious(0) possibly_damaging(0.88) TCGA-HD-7753-01 17 7577115 7577116 - AAC TP53 In_Frame_Ins p.V274dup 0.44 TCGA-HD-7753-01 18 22807417 22807417 G C ZNF521 Missense_Mutation p.F155L 0.27 deleterious(0) probably_damaging(0.977) TCGA-HD-7753-01 18 40695399 40695399 C T RIT2 Missense_Mutation p.G29E 0.11 deleterious(0) probably_damaging(1) TCGA-HD-7753-01 18 40850388 40850388 C G SYT4 Missense_Mutation p.G399A 0.07 tolerated(0.3) benign(0.289) TCGA-HD-7753-01 18 50432611 50432611 C A DCC Missense_Mutation p.P204T 0.32 tolerated(0.36) benign(0.002) TCGA-HD-7753-01 18 72914167 72914167 G T ZADH2 Missense_Mutation p.A113D 0.34 tolerated(0.11) benign(0.057) TCGA-HD-7753-01 19 22941472 22941472 A G ZNF99 Silent p.T413T 0.37 TCGA-HD-7753-01 19 37733572 37733572 C T ZNF383 Missense_Mutation p.P145L 0.34 tolerated(0.63) benign(0.01) TCGA-HD-7753-01 19 38903847 38903847 C T RASGRP4 Missense_Mutation p.E468K 0.40 tolerated(0.27) benign(0.399) TCGA-HD-7753-01 19 44377455 44377455 C T ZNF404 Missense_Mutation p.C304Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-HD-7753-01 19 47584838 47584838 T C ZC3H4 Missense_Mutation p.I458V 0.24 unknown(0) TCGA-HD-7753-01 19 50334077 50334077 G T MED25 Missense_Mutation p.S345I 0.35 deleterious(0.01) benign(0.084) TCGA-HD-7753-01 19 53209236 53209236 G A ZNF611 Missense_Mutation p.L358F 0.10 deleterious(0.03) benign(0.079) TCGA-HD-7753-01 19 54072565 54072565 C G ZNF331 5'UTR 0.36 TCGA-HD-7753-01 19 54257333 54257333 C G MIR527 RNA 0.18 TCGA-HD-7753-01 19 54544131 54544132 AA GAC VSTM1 3'UTR 0.20 TCGA-HD-7753-01 19 8651317 8651317 C T ADAMTS10 Missense_Mutation p.R814H 0.16 deleterious(0.01) possibly_damaging(0.908) TCGA-HD-7753-01 1 118584559 118584559 T C SPAG17 Missense_Mutation p.N974S 0.31 tolerated(0.28) benign(0.034) TCGA-HD-7753-01 1 12414089 12414090 TC - VPS13D Frame_Shift_Del p.S3164* 0.12 TCGA-HD-7753-01 1 159890213 159890213 G A TAGLN2 Silent p.I29I 0.21 TCGA-HD-7753-01 1 171509694 171509694 G T PRRC2C Missense_Mutation p.R1028L 0.18 unknown(0) TCGA-HD-7753-01 1 18149502 18149502 C T ACTL8 5'UTR 0.15 TCGA-HD-7753-01 1 190067946 190067946 C T BRINP3 Silent p.L501L 0.20 TCGA-HD-7753-01 1 190067951 190067951 G T BRINP3 Missense_Mutation p.L500M 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-HD-7753-01 1 248637082 248637082 G T OR2T3 Missense_Mutation p.R144M 0.15 deleterious(0) probably_damaging(0.916) TCGA-HD-7753-01 1 248637083 248637083 G T OR2T3 Missense_Mutation p.R144S 0.15 deleterious(0) possibly_damaging(0.575) TCGA-HD-7753-01 1 248737957 248737957 G T OR2T34 Silent p.T34T 0.16 TCGA-HD-7753-01 1 248737958 248737958 G T OR2T34 Missense_Mutation p.T34N 0.16 tolerated(0.1) possibly_damaging(0.454) TCGA-HD-7753-01 1 41514424 41514424 G A SCMH1 Missense_Mutation p.A405V 0.46 deleterious(0) probably_damaging(0.926) TCGA-HD-7753-01 1 62921091 62921091 A G DOCK7 Silent p.D2108D 0.40 TCGA-HD-7753-01 20 57897498 57897498 G C EDN3 Intron 0.29 TCGA-HD-7753-01 21 38567994 38567994 C T TTC3 Missense_Mutation p.P1746S 0.15 tolerated(0.21) benign(0.003) TCGA-HD-7753-01 21 43547902 43547902 C A UMODL1 Silent p.L1345L 0.17 TCGA-HD-7753-01 22 16267045 16267045 T C POTEH Silent p.E468E 0.15 TCGA-HD-7753-01 22 18844894 18844894 C A BCRP7 RNA 0.67 TCGA-HD-7753-01 22 35726367 35726367 C T TOM1 Nonsense_Mutation p.Q265* 0.27 TCGA-HD-7753-01 2 114476737 114476737 A T SLC35F5 Missense_Mutation p.I497N 0.14 tolerated(0.09) benign(0.089) TCGA-HD-7753-01 2 140990803 140990803 T A LRP1B Missense_Mutation p.E4584D 0.09 benign(0.217) TCGA-HD-7753-01 2 152276855 152276855 C T RIF1 Nonsense_Mutation p.Q219* 0.32 TCGA-HD-7753-01 2 155252510 155252510 C T GALNT13 Silent p.V388V 0.23 TCGA-HD-7753-01 2 204591669 204591669 C - CD28 Frame_Shift_Del p.L123* 0.27 TCGA-HD-7753-01 2 232079577 232079577 C T ARMC9 Nonsense_Mutation p.Q71* 0.12 TCGA-HD-7753-01 2 25387568 25387568 C A POMC Missense_Mutation p.R25L 0.30 tolerated(0.34) benign(0.149) TCGA-HD-7753-01 2 62450518 62450518 C G B3GNT2 Missense_Mutation p.S388C 0.18 deleterious(0.05) possibly_damaging(0.664) TCGA-HD-7753-01 2 90043678 90043678 G C IGKV2D-24 Missense_Mutation p.W14C 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-HD-7753-01 3 10049172 10049172 C G AC022007.5 RNA 0.34 TCGA-HD-7753-01 3 118905597 118905597 A T UPK1B Missense_Mutation p.K3N 0.47 deleterious(0) probably_damaging(0.987) TCGA-HD-7753-01 3 167159856 167159856 T A SERPINI2 3'UTR 0.26 TCGA-HD-7753-01 3 17052602 17052602 A C PLCL2 Missense_Mutation p.E462D 0.58 tolerated(0.05) possibly_damaging(0.688) TCGA-HD-7753-01 4 169188752 169188752 G A DDX60 Missense_Mutation p.A1007V 0.30 deleterious(0) probably_damaging(1) TCGA-HD-7753-01 4 184626159 184626159 C A TRAPPC11 Silent p.I997I 0.32 TCGA-HD-7753-01 4 186545478 186545478 C A SORBS2 Missense_Mutation p.A465S 0.32 tolerated(0.31) probably_damaging(0.998) TCGA-HD-7753-01 4 187179174 187179174 G T KLKB1 Splice_Site p.X576_splice 0.32 TCGA-HD-7753-01 4 52860484 52860484 C T LRRC66 3'UTR 0.24 TCGA-HD-7753-01 4 678633 678634 - A MFSD7 Frame_Shift_Ins p.T200Yfs*114 0.46 TCGA-HD-7753-01 5 140182317 140182317 C A PCDHA3 Missense_Mutation p.A512E 0.42 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-HD-7753-01 5 169535655 169535655 G C FOXI1 3'UTR 0.47 TCGA-HD-7753-01 5 178505981 178505981 T C ZNF354C Missense_Mutation p.I183T 0.40 tolerated(0.68) benign(0.001) TCGA-HD-7753-01 5 23522415 23522415 C G PRDM9 Missense_Mutation p.L171V 0.22 tolerated(0.08) benign(0.13) TCGA-HD-7753-01 5 24505331 24505331 A T CDH10 Missense_Mutation p.L428H 0.41 tolerated(0.22) possibly_damaging(0.608) TCGA-HD-7753-01 5 32098603 32098604 - ACAA PDZD2 Frame_Shift_Ins p.L2696Tfs*58 0.47 TCGA-HD-7753-01 5 3601102 3601102 T C IRX1 Missense_Mutation p.L464P 0.22 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-HD-7753-01 5 40767661 40767661 T C PRKAA1 Missense_Mutation p.Y258C 0.19 tolerated(0.17) possibly_damaging(0.882) TCGA-HD-7753-01 6 44148687 44148702 AAGGGCTTTGGCCTGG CA CAPN11 Frame_Shift_Del p.K608Qfs*12 0.20 TCGA-HD-7753-01 6 54804723 54804723 C G FAM83B Missense_Mutation p.S318R 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-HD-7753-01 7 139737556 139737556 T C PARP12 Missense_Mutation p.K428R 0.29 tolerated(0.38) benign(0.004) TCGA-HD-7753-01 7 143806912 143806912 G T OR2A2 Missense_Mutation p.K79N 0.14 tolerated(0.23) benign(0.038) TCGA-HD-7753-01 7 146825855 146825855 T G CNTNAP2 Missense_Mutation p.M337R 0.27 deleterious(0) probably_damaging(0.926) TCGA-HD-7753-01 7 150936506 150936506 G A SMARCD3 Silent p.A458A 0.28 TCGA-HD-7753-01 7 154585880 154585880 C G DPP6 Missense_Mutation p.L410V 0.24 tolerated(0.61) benign(0.326) TCGA-HD-7753-01 7 23351912 23351912 C T IGF2BP3 3'UTR 0.30 TCGA-HD-7753-01 7 48318540 48318540 A G ABCA13 Silent p.T2583T 0.29 TCGA-HD-7753-01 8 110131301 110131301 G T TRHR Missense_Mutation p.V272L 0.52 deleterious(0.02) possibly_damaging(0.85) TCGA-HD-7753-01 8 113569097 113569119 TGGTGCTACCAGCAAAGTGGCCT - CSMD3 Frame_Shift_Del p.Q1369Hfs*15 0.46 TCGA-HD-7753-01 8 2832027 2832027 T C CSMD1 Missense_Mutation p.T2896A 0.50 benign(0.358) TCGA-HD-7753-01 8 30402239 30402239 C A RBPMS Intron 0.42 TCGA-HD-7753-01 8 59409370 59409370 G T CYP7A1 Missense_Mutation p.A234D 0.24 deleterious(0.01) probably_damaging(1) TCGA-HD-7753-01 9 6986506 6986506 C T KDM4C Missense_Mutation p.S506L 0.45 tolerated(0.28) benign(0) TCGA-HD-7753-01 9 79898351 79898351 G C VPS13A Missense_Mutation p.D1067H 0.34 deleterious(0.01) possibly_damaging(0.595) TCGA-HD-7753-01 9 86518343 86518343 T G KIF27 Missense_Mutation p.K364Q 0.25 tolerated(0.06) benign(0.42) TCGA-HD-7753-01 X 10535569 10535569 C A MID1 Nonsense_Mutation p.E7* 0.46 TCGA-HD-7753-01 X 109696372 109696372 G T RGAG1 Nonsense_Mutation p.G843* 0.64 TCGA-HD-7753-01 X 19022940 19022940 A G GPR64 Missense_Mutation p.Y633H 0.29 deleterious(0.01) probably_damaging(1) TCGA-HD-7753-01 X 44922694 44922694 C T KDM6A Nonsense_Mutation p.R519* 0.28 TCGA-HD-7754-01 10 123970459 123970459 G A TACC2 Silent p.T2173T 0.37 TCGA-HD-7754-01 10 45473220 45473220 C T C10orf10 Missense_Mutation p.A87T 0.28 tolerated(0.89) benign(0) TCGA-HD-7754-01 11 108153603 108153603 A G ATM Missense_Mutation p.Y1248C 0.27 deleterious(0) possibly_damaging(0.806) TCGA-HD-7754-01 11 130275690 130275690 G A ADAMTS8 Silent p.D811D 0.35 TCGA-HD-7754-01 11 22281076 22281076 C T ANO5 Silent p.V473V 0.42 TCGA-HD-7754-01 11 62458817 62458817 C T BSCL2 Missense_Mutation p.V314M 0.32 deleterious(0.01) possibly_damaging(0.65) TCGA-HD-7754-01 12 125441262 125441262 G A DHX37 Missense_Mutation p.R810W 0.34 deleterious(0) probably_damaging(0.993) TCGA-HD-7754-01 12 53609209 53609209 G A RARG Missense_Mutation p.R115C 0.36 deleterious(0) probably_damaging(0.993) TCGA-HD-7754-01 12 6981424 6981424 G A SPSB2 Silent p.I214I 0.57 TCGA-HD-7754-01 13 20412924 20412924 G A ZMYM5 Missense_Mutation p.S263L 0.37 tolerated(0.07) possibly_damaging(0.504) TCGA-HD-7754-01 13 78176794 78176794 A G SCEL Missense_Mutation p.Q328R 0.29 tolerated(0.19) benign(0.027) TCGA-HD-7754-01 14 106967505 106967505 G A IGHV1-46 5'UTR 0.37 TCGA-HD-7754-01 14 33292161 33292161 G A AKAP6 Silent p.S1714S 0.32 TCGA-HD-7754-01 14 69257045 69257046 - T ZFP36L1 Frame_Shift_Ins p.P75Afs*50 0.23 TCGA-HD-7754-01 15 42169045 42169045 G A SPTBN5 Silent p.G1271G 0.25 TCGA-HD-7754-01 15 43452910 43452910 A G TMEM62 Missense_Mutation p.H405R 0.19 deleterious(0.01) benign(0.134) TCGA-HD-7754-01 15 43931101 43931101 C T CATSPER2 Splice_Site p.X281_splice 0.56 TCGA-HD-7754-01 15 52350913 52350913 G A MAPK6 Missense_Mutation p.V262I 0.37 tolerated(0.18) benign(0.003) TCGA-HD-7754-01 16 20999297 20999297 T C DNAH3 Missense_Mutation p.H2231R 0.21 deleterious(0) probably_damaging(0.997) TCGA-HD-7754-01 16 22324968 22324968 G A POLR3E Missense_Mutation p.G131D 0.09 deleterious(0.01) possibly_damaging(0.758) TCGA-HD-7754-01 16 24366272 24366272 G A CACNG3 Silent p.A138A 0.21 TCGA-HD-7754-01 16 31510704 31510704 G A C16orf58 Silent p.D173D 0.44 TCGA-HD-7754-01 17 39135155 39135155 T A KRT40 Missense_Mutation p.E366V 0.32 deleterious(0) probably_damaging(0.999) TCGA-HD-7754-01 18 21140392 21140392 G A NPC1 Silent p.D228D 0.47 TCGA-HD-7754-01 19 10505957 10505957 C T CDC37 Missense_Mutation p.E184K 0.38 deleterious(0.02) possibly_damaging(0.903) TCGA-HD-7754-01 19 19369528 19369528 G T HAPLN4 Missense_Mutation p.D207E 0.36 deleterious(0) probably_damaging(0.968) TCGA-HD-7754-01 19 31770448 31770448 C T TSHZ3 Missense_Mutation p.R84Q 0.30 tolerated(0.86) benign(0.14) TCGA-HD-7754-01 19 54377770 54377770 C T MYADM 3'UTR 0.25 TCGA-HD-7754-01 19 7805861 7805861 G A CD209 3'UTR 0.31 TCGA-HD-7754-01 1 10715871 10715871 C A CASZ1 Splice_Site p.X501_splice 0.40 TCGA-HD-7754-01 1 151139900 151139900 G A SCNM1 Intron 0.30 TCGA-HD-7754-01 1 156130751 156130751 C T SEMA4A Silent p.F247F 0.26 TCGA-HD-7754-01 1 156622478 156622478 G A BCAN Missense_Mutation p.R579Q 0.37 tolerated(0.43) benign(0.007) TCGA-HD-7754-01 1 158549198 158549198 A C OR10X1 Silent p.A164A 0.23 TCGA-HD-7754-01 1 236912510 236912510 C T ACTN2 Silent p.G534G 0.15 TCGA-HD-7754-01 1 23769117 23769117 G A ASAP3 Intron 0.25 TCGA-HD-7754-01 1 35250490 35250490 G A GJB3 Missense_Mutation p.V43M 0.22 deleterious(0.01) probably_damaging(0.956) TCGA-HD-7754-01 1 48701511 48701511 C T SLC5A9 Missense_Mutation p.R443C 0.41 deleterious(0.01) probably_damaging(1) TCGA-HD-7754-01 1 66838038 66838038 T C PDE4B Missense_Mutation p.W630R 0.38 deleterious(0) probably_damaging(1) TCGA-HD-7754-01 1 85564339 85564339 G A WDR63 Missense_Mutation p.E493K 0.40 deleterious(0.03) possibly_damaging(0.893) TCGA-HD-7754-01 20 18165392 18165392 A C CSRP2BP Silent p.R711R 0.28 TCGA-HD-7754-01 20 45812032 45812032 C T EYA2 Missense_Mutation p.A510V 0.48 deleterious(0) possibly_damaging(0.63) TCGA-HD-7754-01 20 47567892 47567892 C T ARFGEF2 Silent p.N103N 0.31 TCGA-HD-7754-01 20 4842675 4842675 G A SLC23A2 Missense_Mutation p.R515W 0.38 deleterious(0) probably_damaging(0.991) TCGA-HD-7754-01 20 52570172 52570172 C T BCAS1 Silent p.Q493Q 0.25 TCGA-HD-7754-01 21 38858909 38858909 C T DYRK1A Silent p.Y219Y 0.42 TCGA-HD-7754-01 21 47916967 47916967 C T DIP2A Missense_Mutation p.S117L 0.36 deleterious(0) probably_damaging(0.968) TCGA-HD-7754-01 22 27021582 27021582 G T CRYBA4 Missense_Mutation p.C99F 0.25 deleterious(0.05) probably_damaging(0.933) TCGA-HD-7754-01 22 41363843 41363843 C T RBX1 Missense_Mutation p.T90I 0.29 deleterious(0) benign(0.008) TCGA-HD-7754-01 22 50719042 50719042 C T PLXNB2 Missense_Mutation p.A1351T 0.16 deleterious(0) probably_damaging(1) TCGA-HD-7754-01 22 50960982 50960982 G T NCAPH2 Missense_Mutation p.R454S 0.34 tolerated(0.42) benign(0.039) TCGA-HD-7754-01 2 121989537 121989537 G A TFCP2L1 Silent p.H402H 0.35 TCGA-HD-7754-01 2 141081592 141081592 T C LRP1B Missense_Mutation p.I4128M 0.39 benign(0.308) TCGA-HD-7754-01 2 179654722 179654722 G T TTN Missense_Mutation p.Q641K 0.20 TCGA-HD-7754-01 2 211018639 211018639 C T KANSL1L Missense_Mutation p.R223H 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-HD-7754-01 2 43755035 43755035 G A THADA Silent p.L1119L 0.04 TCGA-HD-7754-01 2 63605643 63605645 TGC - WDPCP Splice_Site p.X542_splice 0.37 TCGA-HD-7754-01 3 148459232 148459232 G A AGTR1 Missense_Mutation p.R137H 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-HD-7754-01 3 15602363 15602363 C T HACL1 3'UTR 0.27 TCGA-HD-7754-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.22 deleterious(0.04) probably_damaging(0.96) TCGA-HD-7754-01 3 50418478 50418478 T C CACNA2D2 Silent p.T244T 0.35 TCGA-HD-7754-01 3 8794894 8794894 G A OXTR Silent p.I313I 0.38 TCGA-HD-7754-01 4 123176339 123176339 T C KIAA1109 Silent p.V2093V 0.09 TCGA-HD-7754-01 4 25258218 25258218 A G PI4K2B Silent p.K226K 0.32 TCGA-HD-7754-01 4 38776633 38776633 C A TLR10 Silent p.L193L 0.32 TCGA-HD-7754-01 4 57889516 57889516 G A POLR2B Missense_Mutation p.D846N 0.26 deleterious(0.04) benign(0.243) TCGA-HD-7754-01 4 72629179 72629179 G T GC Nonsense_Mutation p.S235* 0.35 TCGA-HD-7754-01 5 32712195 32712195 G A NPR3 Missense_Mutation p.D105N 0.34 tolerated(0.35) benign(0.163) TCGA-HD-7754-01 5 82834751 82834751 T C VCAN Missense_Mutation p.S1977P 0.26 deleterious(0.04) benign(0.025) TCGA-HD-7754-01 7 138591668 138591668 C T KIAA1549 Missense_Mutation p.E1153K 0.36 deleterious(0) probably_damaging(0.999) TCGA-HD-7754-01 7 141315304 141315304 C T AGK Missense_Mutation p.P153S 0.34 deleterious(0) probably_damaging(1) TCGA-HD-7754-01 7 1595084 1595084 C T TMEM184A Missense_Mutation p.V13I 0.38 tolerated_low_confidence(0.14) benign(0.017) TCGA-HD-7754-01 7 27831655 27831655 C T TAX1BP1 Missense_Mutation p.R357C 0.31 deleterious(0.01) possibly_damaging(0.749) TCGA-HD-7754-01 8 144941384 144941384 G A EPPK1 Missense_Mutation p.T2013M 0.33 probably_damaging(0.999) TCGA-HD-7754-01 8 20077913 20077915 GCT - ATP6V1B2 Missense_Mutation 0.09 TCGA-HD-7754-01 8 20107176 20107176 C T LZTS1 3'UTR 0.47 TCGA-HD-7754-01 8 23290623 23290623 C T ENTPD4 Missense_Mutation p.R556Q 0.33 tolerated(0.32) benign(0.086) TCGA-HD-7754-01 9 140476884 140476884 C A ZMYND19 3'UTR 0.31 TCGA-HD-7754-01 9 5065041 5065041 G A JAK2 Splice_Site p.X405_splice 0.65 TCGA-HD-7754-01 9 94171927 94171927 C T NFIL3 Missense_Mutation p.E364K 0.30 tolerated(0.06) benign(0.342) TCGA-HD-7754-01 X 76890120 76890120 G A ATRX Missense_Mutation p.L1592F 0.72 probably_damaging(1) TCGA-HD-7831-01 10 16794565 16794565 G A RSU1 Missense_Mutation p.R191C 0.20 tolerated(0.08) benign(0.244) TCGA-HD-7831-01 11 5068241 5068241 C G OR52J3 Silent p.V162V 0.31 TCGA-HD-7831-01 11 56128083 56128083 G A OR8J1 Missense_Mutation p.D121N 0.11 deleterious(0) probably_damaging(1) TCGA-HD-7831-01 11 76872053 76872053 A G MYO7A Missense_Mutation p.D412G 0.19 tolerated(0.21) benign(0.431) TCGA-HD-7831-01 11 78277240 78277240 C T NARS2 Missense_Mutation p.V151I 0.18 tolerated(0.05) benign(0.003) TCGA-HD-7831-01 12 8994102 8994102 C T A2ML1 Silent p.S406S 0.27 TCGA-HD-7831-01 14 24545396 24545396 G A CPNE6 Silent p.R321R 0.17 TCGA-HD-7831-01 14 91121355 91121356 - GTAC TTC7B Frame_Shift_Ins p.S481Vfs*7 0.21 TCGA-HD-7831-01 15 65959893 65959893 T A DENND4A Missense_Mutation p.H1711L 0.17 deleterious(0) benign(0.05) TCGA-HD-7831-01 17 7578205 7578206 - T TP53 Frame_Shift_Ins p.S215Kfs*7 0.35 TCGA-HD-7831-01 18 67992652 67992652 G A SOCS6 Missense_Mutation p.V250I 0.17 tolerated(0.2) benign(0.015) TCGA-HD-7831-01 19 21132642 21132642 T C ZNF85 Missense_Mutation p.L441P 0.12 deleterious(0) probably_damaging(0.999) TCGA-HD-7831-01 19 29215175 29215175 T C AC005307.3 RNA 0.08 TCGA-HD-7831-01 19 4219650 4219650 A T ANKRD24 Silent p.T1022T 0.11 TCGA-HD-7831-01 19 8152012 8152012 C T FBN3 Missense_Mutation p.V2235I 0.15 tolerated(1) benign(0.02) TCGA-HD-7831-01 1 156509200 156509200 G A IQGAP3 Nonsense_Mutation p.Q1008* 0.26 TCGA-HD-7831-01 1 156513967 156513967 G A IQGAP3 Missense_Mutation p.R813C 0.15 deleterious(0) probably_damaging(1) TCGA-HD-7831-01 20 37001732 37001732 C T LBP Missense_Mutation p.A426V 0.12 deleterious(0.03) benign(0.293) TCGA-HD-7831-01 22 37770213 37770213 G A ELFN2 Silent p.H454H 0.05 TCGA-HD-7831-01 22 42972094 42972094 G A SERHL2 3'Flank 0.32 TCGA-HD-7831-01 2 130949467 130949469 CTT - TUBA3E In_Frame_Del p.K430del 0.11 TCGA-HD-7831-01 2 89035244 89035244 G A RPIA Missense_Mutation p.A196T 0.22 deleterious(0) probably_damaging(0.975) TCGA-HD-7831-01 2 89265982 89265982 G T IGKV1-6 Silent p.G50G 0.20 TCGA-HD-7831-01 3 133362159 133362159 G C TOPBP1 Missense_Mutation p.P636A 0.23 deleterious(0) probably_damaging(1) TCGA-HD-7831-01 3 155215156 155215156 A T PLCH1 Nonsense_Mutation p.L604* 0.12 TCGA-HD-7831-01 3 46944059 46944059 G A PTH1R Missense_Mutation p.V419I 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-HD-7831-01 4 2659530 2659530 A G FAM193A Missense_Mutation p.M147V 0.18 tolerated(0.47) possibly_damaging(0.517) TCGA-HD-7831-01 4 515515 515515 C T PIGG Silent p.L467L 0.24 TCGA-HD-7831-01 4 73013541 73013541 G T NPFFR2 3'UTR 0.26 TCGA-HD-7831-01 5 1094337 1094337 G C SLC12A7 Missense_Mutation p.P51A 0.10 tolerated(0.06) benign(0.216) TCGA-HD-7831-01 5 115151945 115151945 G A CDO1 Silent p.Y50Y 0.23 TCGA-HD-7831-01 5 33937474 33937474 G T RXFP3 Missense_Mutation p.C210F 0.33 deleterious(0.01) benign(0.027) TCGA-HD-7831-01 5 35759820 35759820 A G SPEF2 Missense_Mutation p.R1207G 0.19 deleterious(0.01) possibly_damaging(0.498) TCGA-HD-7831-01 5 86672729 86672740 ATGCTTTATCAC - RASA1 In_Frame_Del p.A740_H743del 0.27 TCGA-HD-7831-01 6 152557366 152557366 T A SYNE1 Missense_Mutation p.I6758L 0.15 benign(0.001) TCGA-HD-7831-01 6 166918090 166918090 G A RPS6KA2 Missense_Mutation p.T165M 0.18 deleterious(0) probably_damaging(0.947) TCGA-HD-7831-01 7 107314736 107314736 A G SLC26A4 Silent p.R181R 0.18 TCGA-HD-7831-01 7 21516774 21516774 G T SP4 Missense_Mutation p.A586S 0.21 tolerated(0.94) benign(0.01) TCGA-HD-7831-01 7 2632713 2632713 C T IQCE Silent p.C434C 0.15 TCGA-HD-7831-01 7 87178771 87178771 C T ABCB1 Missense_Mutation p.A540T 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-HD-7831-01 8 103293651 103293651 C T UBR5 Silent p.E1931E 0.15 TCGA-HD-7831-01 9 126777641 126777641 G A LHX2 Silent p.A188A 0.09 TCGA-HD-7831-01 9 130699710 130699710 T C DPM2 Intron 0.30 TCGA-HD-7831-01 9 136211174 136211174 C A MED22 Missense_Mutation p.E73D 0.08 tolerated(0.3) probably_damaging(0.995) TCGA-HD-7831-01 9 139929486 139929486 C T C9orf139 Missense_Mutation p.H185Y 0.23 deleterious_low_confidence(0) unknown(0) TCGA-HD-7831-01 9 91994380 91994380 G A SEMA4D Missense_Mutation p.L610F 0.06 deleterious(0.01) possibly_damaging(0.609) TCGA-HD-7831-01 X 229592 229592 C A GTPBP6 Splice_Site p.X24_splice 0.12 TCGA-HD-7831-01 X 64719029 64719037 ACTACCGAG - ZC3H12B In_Frame_Del p.Y301_D303del 0.40 TCGA-HD-7832-01 10 121563719 121563721 AGA - INPP5F In_Frame_Del p.K385del 0.33 TCGA-HD-7832-01 10 127496033 127496033 C T UROS Missense_Mutation p.E115K 0.24 tolerated(0.49) benign(0.005) TCGA-HD-7832-01 10 134036234 134036234 T A STK32C Missense_Mutation p.M388L 0.54 tolerated(0.21) benign(0.341) TCGA-HD-7832-01 10 15107610 15107610 G T OLAH Missense_Mutation p.D197Y 0.41 deleterious(0.04) benign(0.424) TCGA-HD-7832-01 10 25886968 25886968 G A GPR158 Missense_Mutation p.E805K 0.36 deleterious(0.04) benign(0.094) TCGA-HD-7832-01 10 70940081 70940081 C - SUPV3L1 Frame_Shift_Del p.L12Sfs*56 0.32 TCGA-HD-7832-01 11 100141898 100141898 C T CNTN5 Nonsense_Mutation p.R747* 0.24 TCGA-HD-7832-01 11 111338318 111338318 C T BTG4 3'UTR 0.32 TCGA-HD-7832-01 11 123471189 123471189 C T GRAMD1B Missense_Mutation p.S185L 0.38 deleterious(0) possibly_damaging(0.536) TCGA-HD-7832-01 11 2154782 2154782 C T IGF2 Missense_Mutation p.E147K 0.47 deleterious(0.03) possibly_damaging(0.801) TCGA-HD-7832-01 11 56085986 56085986 C T OR8K3 Silent p.F68F 0.33 TCGA-HD-7832-01 11 611008 611008 A T PHRF1 Missense_Mutation p.I1577F 0.32 deleterious(0) possibly_damaging(0.702) TCGA-HD-7832-01 11 61135299 61135299 G A TMEM138 Intron 0.28 TCGA-HD-7832-01 11 65714808 65714808 C T TSGA10IP RNA 0.25 TCGA-HD-7832-01 12 108604016 108604016 G A WSCD2 Missense_Mutation p.V206M 0.41 tolerated(0.13) benign(0.086) TCGA-HD-7832-01 12 40158310 40158310 G A SLC2A13 Silent p.L558L 0.29 TCGA-HD-7832-01 12 40758787 40758787 G A LRRK2 Missense_Mutation p.R2442H 0.38 tolerated(0.81) benign(0.028) TCGA-HD-7832-01 12 54396311 54396311 C T HOXC9 Silent p.L212L 0.29 TCGA-HD-7832-01 12 54674590 54674590 T A HNRNPA1 5'UTR 0.34 TCGA-HD-7832-01 12 56495083 56495083 C T ERBB3 Missense_Mutation p.S1147F 0.39 deleterious(0.02) benign(0.094) TCGA-HD-7832-01 12 63544545 63544545 G A AVPR1A Silent p.G24G 0.35 TCGA-HD-7832-01 12 81746976 81746976 G C PPFIA2 Missense_Mutation p.S639C 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-HD-7832-01 12 9265043 9265043 C T A2M Silent p.V120V 0.42 TCGA-HD-7832-01 13 113730378 113730378 C T MCF2L Silent p.I469I 0.31 TCGA-HD-7832-01 13 88329719 88329719 G A SLITRK5 Silent p.R692R 0.12 TCGA-HD-7832-01 14 24114424 24114424 G A DHRS2 Silent p.G272G 0.38 TCGA-HD-7832-01 14 33291093 33291093 G C AKAP6 Missense_Mutation p.Q1358H 0.23 deleterious(0.02) possibly_damaging(0.867) TCGA-HD-7832-01 14 47601019 47601019 G T MDGA2 Missense_Mutation p.L275I 0.39 deleterious(0.04) possibly_damaging(0.879) TCGA-HD-7832-01 14 74440678 74440678 G C ENTPD5 Missense_Mutation p.T263S 0.35 tolerated(0.72) benign(0.01) TCGA-HD-7832-01 15 33927847 33927847 A G RYR3 Missense_Mutation p.K1070E 0.31 benign(0.445) TCGA-HD-7832-01 15 40266017 40266017 A G EIF2AK4 Intron 0.40 TCGA-HD-7832-01 15 54527261 54527261 G A UNC13C Missense_Mutation p.M1035I 0.26 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-HD-7832-01 15 75974679 75974679 C T CSPG4 Silent p.Q1635Q 0.31 TCGA-HD-7832-01 16 27761517 27761517 A G KIAA0556 Missense_Mutation p.N1079S 0.37 deleterious(0) probably_damaging(1) TCGA-HD-7832-01 17 43545614 43545614 T A PLEKHM1 Silent p.G423G 0.20 TCGA-HD-7832-01 17 72923778 72923778 A T OTOP2 Silent p.T176T 0.30 TCGA-HD-7832-01 17 7847852 7847852 G A CNTROB Missense_Mutation p.E544K 0.41 tolerated(0.26) possibly_damaging(0.718) TCGA-HD-7832-01 17 8215869 8215869 C A ARHGEF15 Missense_Mutation p.P171Q 0.31 deleterious_low_confidence(0.03) benign(0.103) TCGA-HD-7832-01 17 8411915 8411915 G A MYH10 Silent p.A1057A 0.35 TCGA-HD-7832-01 17 8730512 8730512 C T PIK3R6 Missense_Mutation p.A498T 0.38 tolerated(0.28) benign(0.133) TCGA-HD-7832-01 18 19995819 19995819 T C CTAGE1 Silent p.E652E 0.29 TCGA-HD-7832-01 18 28919849 28919849 T - DSG1 Frame_Shift_Del p.D516Efs*46 0.24 TCGA-HD-7832-01 18 33780032 33780032 C T MOCOS Missense_Mutation p.T229M 0.29 tolerated(0.11) benign(0.109) TCGA-HD-7832-01 19 15302902 15302902 C G NOTCH3 Missense_Mutation p.C183S 0.27 deleterious(0) probably_damaging(0.999) TCGA-HD-7832-01 19 18731326 18731326 C T TMEM59L Silent p.L337L 0.35 TCGA-HD-7832-01 19 2097286 2097286 T G IZUMO4 Missense_Mutation p.Y85D 0.37 deleterious(0) probably_damaging(0.991) TCGA-HD-7832-01 19 35175210 35175210 G A ZNF302 Missense_Mutation p.D90N 0.37 deleterious(0.03) benign(0.009) TCGA-HD-7832-01 19 36633613 36633613 C A CAPNS1 Missense_Mutation p.F101L 0.31 deleterious(0) possibly_damaging(0.891) TCGA-HD-7832-01 19 41289968 41289968 G T RAB4B Missense_Mutation p.A140S 0.37 deleterious(0) possibly_damaging(0.855) TCGA-HD-7832-01 19 46215924 46215924 C T FBXO46 Missense_Mutation p.G277D 0.42 tolerated(0.58) benign(0.008) TCGA-HD-7832-01 19 47844487 47844487 C T C5AR2 Missense_Mutation p.T144M 0.31 tolerated(0.1) benign(0.005) TCGA-HD-7832-01 19 53668506 53668506 G C ZNF665 Missense_Mutation p.Q413E 0.36 tolerated(0.16) benign(0.094) TCGA-HD-7832-01 19 53959873 53959873 C T ZNF761 RNA 0.28 TCGA-HD-7832-01 19 7543261 7543261 A G PEX11G Missense_Mutation p.S144P 0.60 deleterious(0) possibly_damaging(0.877) TCGA-HD-7832-01 1 10356659 10356659 C T KIF1B Silent p.P553P 0.47 TCGA-HD-7832-01 1 11893658 11893658 G A CLCN6 Silent p.P445P 0.49 TCGA-HD-7832-01 1 152732834 152732834 C T KPRP Missense_Mutation p.P257L 0.41 deleterious(0.04) possibly_damaging(0.851) TCGA-HD-7832-01 1 179354444 179354444 A G AXDND1 Silent p.R271R 0.71 TCGA-HD-7832-01 1 20517058 20517058 G A UBXN10 Missense_Mutation p.A2T 0.34 deleterious(0.04) benign(0.189) TCGA-HD-7832-01 1 215775237 215775237 A G KCTD3 Missense_Mutation p.Y321C 0.37 tolerated(0.25) benign(0.012) TCGA-HD-7832-01 1 247921166 247921166 G A OR1C1 Silent p.L181L 0.38 TCGA-HD-7832-01 1 27687727 27687727 C A MAP3K6 Nonsense_Mutation p.E585* 0.22 TCGA-HD-7832-01 1 31655404 31655404 T G NKAIN1 Missense_Mutation p.K169Q 0.26 tolerated(0.19) probably_damaging(0.998) TCGA-HD-7832-01 1 37271729 37271729 C T GRIK3 Missense_Mutation p.G764S 0.33 tolerated(0.06) probably_damaging(0.985) TCGA-HD-7832-01 1 48869550 48869550 T C SPATA6 Missense_Mutation p.N137S 0.30 deleterious(0) benign(0.026) TCGA-HD-7832-01 1 50663122 50663122 G A ELAVL4 Missense_Mutation p.M269I 0.32 tolerated(0.5) benign(0.005) TCGA-HD-7832-01 1 75038685 75038685 C A C1orf173 Silent p.V903V 0.31 TCGA-HD-7832-01 1 85555914 85555914 A T WDR63 Missense_Mutation p.S286C 0.50 deleterious(0.03) benign(0.003) TCGA-HD-7832-01 1 93202126 93202127 - TGT EVI5 In_Frame_Ins p.N36dup 0.35 TCGA-HD-7832-01 20 13830958 13830958 T G SEL1L2 Missense_Mutation p.H496P 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.451) TCGA-HD-7832-01 20 23017025 23017025 C T SSTR4 Missense_Mutation p.A302V 0.22 tolerated(0.1) possibly_damaging(0.861) TCGA-HD-7832-01 20 31021439 31021439 G A ASXL1 Missense_Mutation p.E480K 0.08 tolerated(0.17) benign(0.003) TCGA-HD-7832-01 20 3565467 3565467 C T ATRN Missense_Mutation p.L1042F 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-HD-7832-01 20 57875857 57875857 G A EDN3 5'UTR 0.23 TCGA-HD-7832-01 20 58443591 58443591 A T SYCP2 Missense_Mutation p.Y1289N 0.42 deleterious(0.01) benign(0.441) TCGA-HD-7832-01 20 62701952 62701952 C A TCEA2 Nonsense_Mutation p.C261* 0.48 TCGA-HD-7832-01 21 11039141 11039141 G T BAGE2 RNA 0.06 TCGA-HD-7832-01 22 24086332 24086332 G A ZNF70 Silent p.G332G 0.32 TCGA-HD-7832-01 22 33670599 33670599 G A LARGE Silent p.F695F 0.49 TCGA-HD-7832-01 22 39262468 39262468 G T CBX6 Missense_Mutation p.P329T 0.44 deleterious(0.01) possibly_damaging(0.908) TCGA-HD-7832-01 22 40061518 40061518 G A CACNA1I Silent p.A1289A 0.40 TCGA-HD-7832-01 22 40573994 40573994 A G TNRC6B 5'UTR 0.70 TCGA-HD-7832-01 22 45937151 45937151 G A FBLN1 Missense_Mutation p.G322E 0.30 deleterious(0.03) probably_damaging(0.993) TCGA-HD-7832-01 2 102782600 102782600 A G IL1R1 Missense_Mutation p.I172V 0.36 tolerated(0.31) benign(0.001) TCGA-HD-7832-01 2 128480839 128480839 C T WDR33 Missense_Mutation p.G427R 0.28 deleterious(0.02) unknown(0) TCGA-HD-7832-01 2 179588170 179588170 A T TTN Silent p.S7219S 0.33 TCGA-HD-7832-01 2 179654095 179654095 G C TTN Missense_Mutation p.H690D 0.32 TCGA-HD-7832-01 2 196726633 196726633 C T DNAH7 Missense_Mutation p.R2515Q 0.33 deleterious(0.04) possibly_damaging(0.663) TCGA-HD-7832-01 2 234198586 234198586 G A ATG16L1 Silent p.R430R 0.32 TCGA-HD-7832-01 2 239342262 239342262 G A ASB1 Silent p.T39T 0.31 TCGA-HD-7832-01 2 5833021 5833021 C T SOX11 Silent p.F56F 0.39 TCGA-HD-7832-01 2 85554437 85554437 A G TGOLN2 Missense_Mutation p.S140P 0.36 tolerated(0.26) possibly_damaging(0.82) TCGA-HD-7832-01 2 97498412 97498412 A T CNNM3 3'UTR 0.35 TCGA-HD-7832-01 3 119327618 119327618 G T PLA1A Missense_Mutation p.V93F 0.24 deleterious(0) possibly_damaging(0.866) TCGA-HD-7832-01 3 122634428 122634428 G A SEMA5B Missense_Mutation p.S670L 0.20 deleterious(0.01) possibly_damaging(0.693) TCGA-HD-7832-01 3 131101882 131101882 G A NUDT16 3'UTR 0.57 TCGA-HD-7832-01 3 155652794 155652794 G T GMPS Missense_Mutation p.R589L 0.26 deleterious(0) probably_damaging(0.99) TCGA-HD-7832-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.19 deleterious(0.04) probably_damaging(0.96) TCGA-HD-7832-01 4 128564981 128564981 G A INTU Missense_Mutation p.G151E 0.35 deleterious(0.03) possibly_damaging(0.584) TCGA-HD-7832-01 4 141543481 141543481 C T TBC1D9 Silent p.E1223E 0.40 TCGA-HD-7832-01 4 71346725 71346725 C T MUC7 Silent p.H88H 0.30 TCGA-HD-7832-01 5 127595365 127595365 C T FBN2 Missense_Mutation p.D2841N 0.25 tolerated(0.08) benign(0.069) TCGA-HD-7832-01 5 128977612 128977612 C T ADAMTS19 Silent p.L605L 0.19 TCGA-HD-7832-01 5 140857271 140857271 C T PCDHGC3 Missense_Mutation p.R530W 0.22 tolerated(0.09) possibly_damaging(0.846) TCGA-HD-7832-01 5 149216430 149216430 C T PPARGC1B Silent p.F804F 0.83 TCGA-HD-7832-01 5 66479050 66479050 T C CD180 Missense_Mutation p.S541G 0.14 tolerated(0.15) benign(0.001) TCGA-HD-7832-01 6 154412611 154412611 C T OPRM1 Intron 0.28 TCGA-HD-7832-01 6 170052099 170052099 G A WDR27 Missense_Mutation p.R470W 0.32 tolerated(0.1) benign(0.023) TCGA-HD-7832-01 6 86259572 86259572 T C SNX14 Silent p.Q220Q 0.35 TCGA-HD-7832-01 7 104753061 104753061 C G KMT2E Missense_Mutation p.Q1620E 0.32 deleterious_low_confidence(0.01) benign(0.042) TCGA-HD-7832-01 7 141758087 141758087 G A MGAM Missense_Mutation p.A1260T 0.36 tolerated(0.36) benign(0.11) TCGA-HD-7832-01 7 142605866 142605866 G T TRPV5 Silent p.P668P 0.37 TCGA-HD-7832-01 7 36456706 36456706 A C ANLN Missense_Mutation p.M514L 0.46 tolerated(0.48) benign(0.001) TCGA-HD-7832-01 7 37951727 37951727 C T SFRP4 Missense_Mutation p.R262H 0.24 tolerated(0.16) benign(0.023) TCGA-HD-7832-01 7 40134010 40134010 C T CDK13 Nonsense_Mutation p.Q1324* 0.34 TCGA-HD-7832-01 7 4198148 4198148 G A SDK1 Missense_Mutation p.S1565N 0.22 deleterious(0) probably_damaging(0.991) TCGA-HD-7832-01 7 55268060 55268060 A C EGFR Missense_Mutation p.E967A 0.37 deleterious(0) probably_damaging(0.992) TCGA-HD-7832-01 8 131172152 131172152 T C ASAP1 Missense_Mutation p.Y323C 0.58 deleterious(0.02) probably_damaging(0.984) TCGA-HD-7832-01 8 141900671 141900671 T C PTK2 Missense_Mutation p.I56V 0.21 tolerated(0.69) probably_damaging(0.98) TCGA-HD-7832-01 8 53452400 53452400 T C FAM150A Missense_Mutation p.T106A 0.54 tolerated(0.08) benign(0.251) TCGA-HD-7832-01 8 61765709 61765709 C T CHD7 Missense_Mutation p.S2142F 0.62 benign(0.015) TCGA-HD-7832-01 8 82373746 82373746 A G FABP9 Missense_Mutation p.F5L 0.22 tolerated(0.22) benign(0.436) TCGA-HD-7832-01 9 111853316 111853316 G A TMEM245 Missense_Mutation p.L346F 0.09 tolerated(0.47) benign(0.418) TCGA-HD-7832-01 9 115759580 115759580 G C ZNF883 RNA 0.09 TCGA-HD-7832-01 9 131038579 131038579 C T SWI5 Missense_Mutation p.P52L 0.15 tolerated_low_confidence(0.05) benign(0.011) TCGA-HD-7832-01 X 11777805 11777805 A G MSL3 Intron 0.64 TCGA-HD-7832-01 X 30260591 30260591 G A MAGEB4 Silent p.T113T 0.75 TCGA-HD-7832-01 X 53571556 53571556 C T HUWE1 Missense_Mutation p.R3739Q 0.74 unknown(0) TCGA-HD-8224-01 10 104486509 104486509 C G SFXN2 Missense_Mutation p.S39C 0.08 deleterious(0) possibly_damaging(0.713) TCGA-HD-8224-01 10 45495783 45495783 G T C10orf25 3'UTR 0.25 TCGA-HD-8224-01 10 55582841 55582841 C A PCDH15 Missense_Mutation p.V1551L 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-HD-8224-01 10 81838490 81838490 G A TMEM254 Missense_Mutation p.R12Q 0.27 deleterious(0.03) possibly_damaging(0.664) TCGA-HD-8224-01 10 96609684 96609684 T C CYP2C19 Missense_Mutation p.I387T 0.29 deleterious(0) probably_damaging(0.938) TCGA-HD-8224-01 11 117691421 117691421 G A FXYD2 Intron 0.36 TCGA-HD-8224-01 11 18745814 18745814 A T IGSF22 Intron 0.13 TCGA-HD-8224-01 11 26743121 26743121 T C SLC5A12 Silent p.Q47Q 0.27 TCGA-HD-8224-01 11 65272779 65272779 T C MALAT1 RNA 0.29 TCGA-HD-8224-01 12 116413040 116413040 C G MED13L Missense_Mutation p.M1889I 0.33 deleterious(0.01) possibly_damaging(0.535) TCGA-HD-8224-01 12 13764725 13764725 C T GRIN2B Missense_Mutation p.V572M 0.43 tolerated(0.3) benign(0.024) TCGA-HD-8224-01 12 48526799 48526799 G A PFKM Missense_Mutation p.R200H 0.22 deleterious(0) possibly_damaging(0.889) TCGA-HD-8224-01 13 109550430 109550430 A G MYO16 Missense_Mutation p.I554V 0.23 tolerated(0.17) probably_damaging(0.999) TCGA-HD-8224-01 14 100604282 100604282 C G EVL Intron 0.29 TCGA-HD-8224-01 14 104642766 104642766 C T KIF26A Missense_Mutation p.P1214L 0.50 tolerated(0.37) benign(0.003) TCGA-HD-8224-01 14 50069156 50069156 G T LRR1 Missense_Mutation p.K84N 0.29 tolerated(0.07) benign(0.411) TCGA-HD-8224-01 14 58701146 58701146 T A ACTR10 Nonsense_Mutation p.Y377* 0.06 TCGA-HD-8224-01 14 76949084 76949084 T A ESRRB Missense_Mutation p.W257R 0.39 deleterious(0) probably_damaging(1) TCGA-HD-8224-01 14 94464527 94464527 A C LINC00521 RNA 0.32 TCGA-HD-8224-01 15 34078150 34078150 A T RYR3 Missense_Mutation p.I3186F 0.17 probably_damaging(0.961) TCGA-HD-8224-01 15 43924439 43924439 G T CATSPER2 Missense_Mutation p.Q507K 0.04 deleterious(0) probably_damaging(0.998) TCGA-HD-8224-01 15 49284782 49284782 C G SECISBP2L Missense_Mutation p.E989Q 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-HD-8224-01 15 65108380 65108380 A T PIF1 3'UTR 0.42 TCGA-HD-8224-01 16 23080082 23080082 T C USP31 Missense_Mutation p.Q1115R 0.50 tolerated_low_confidence(0.24) benign(0.205) TCGA-HD-8224-01 16 31075550 31075550 G A ZNF668 Silent p.S100S 0.33 TCGA-HD-8224-01 17 34340898 34340898 C T CCL23 Missense_Mutation p.G63E 0.31 deleterious(0.03) probably_damaging(0.934) TCGA-HD-8224-01 17 40997475 40997475 G T AOC2 Missense_Mutation p.G278C 0.23 deleterious(0) probably_damaging(0.984) TCGA-HD-8224-01 17 48245324 48245324 G C SGCA Missense_Mutation p.R110P 0.22 deleterious(0) probably_damaging(0.998) TCGA-HD-8224-01 17 57290780 57290788 AAAGTAATG - SMG8 In_Frame_Del p.K869_M871del 0.25 TCGA-HD-8224-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.66 tolerated(0.09) benign(0.344) TCGA-HD-8224-01 18 19997513 19997513 C T CTAGE1 Missense_Mutation p.E88K 0.35 tolerated(0.37) possibly_damaging(0.882) TCGA-HD-8224-01 18 28993242 28993242 C A DSG4 Missense_Mutation p.T955N 0.40 deleterious(0) probably_damaging(1) TCGA-HD-8224-01 18 28993243 28993243 C A DSG4 Silent p.T955T 0.39 TCGA-HD-8224-01 18 34297916 34297930 GGAGAAGGGGGATGG - FHOD3 In_Frame_Del p.K712_E716del 0.41 TCGA-HD-8224-01 18 61231287 61231287 C G SERPINB12 Missense_Mutation p.F193L 0.07 deleterious(0) probably_damaging(0.973) TCGA-HD-8224-01 19 41010033 41010033 G T SPTBN4 Missense_Mutation p.E553D 0.16 tolerated(0.35) benign(0.005) TCGA-HD-8224-01 19 41931832 41931832 C T B3GNT8 Silent p.R284R 0.10 TCGA-HD-8224-01 19 50916759 50916759 G T POLD1 Missense_Mutation p.G744V 0.20 deleterious(0) probably_damaging(0.997) TCGA-HD-8224-01 1 152187893 152187893 C T HRNR Missense_Mutation p.R2071H 0.22 unknown(0) TCGA-HD-8224-01 1 153907304 153907306 TGT - DENND4B In_Frame_Del p.Q910del 0.55 TCGA-HD-8224-01 1 154991185 154991185 G C DCST2 Silent p.P719P 0.26 TCGA-HD-8224-01 1 16358300 16358300 C G CLCNKA Missense_Mutation p.S573C 0.07 deleterious(0) possibly_damaging(0.773) TCGA-HD-8224-01 1 167757148 167757148 G A MPZL1 Missense_Mutation p.R267Q 0.05 tolerated(0.17) probably_damaging(0.996) TCGA-HD-8224-01 1 176525440 176525440 A T PAPPA2 5'UTR 0.56 TCGA-HD-8224-01 1 18809380 18809380 A C KLHDC7A Missense_Mutation p.E635D 0.16 tolerated(0.09) benign(0.127) TCGA-HD-8224-01 1 6195309 6195309 C T CHD5 Missense_Mutation p.E951K 0.10 deleterious(0) probably_damaging(0.992) TCGA-HD-8224-01 1 62739445 62739445 C G KANK4 Missense_Mutation p.S444T 0.32 tolerated(0.19) benign(0.004) TCGA-HD-8224-01 1 66075955 66075956 - A LEPR Frame_Shift_Ins p.N659Kfs*13 0.18 TCGA-HD-8224-01 1 75596492 75596492 C T LHX8 Intron 0.31 TCGA-HD-8224-01 1 92445292 92445292 G A BRDT Missense_Mutation p.R422H 0.19 tolerated(0.75) benign(0.059) TCGA-HD-8224-01 20 13756720 13756720 C T ESF1 Silent p.E278E 0.20 TCGA-HD-8224-01 20 30419606 30419606 G A MYLK2 Missense_Mutation p.V509I 0.25 tolerated(0.51) possibly_damaging(0.514) TCGA-HD-8224-01 20 54573662 54573662 C A CBLN4 Missense_Mutation p.G186V 0.37 deleterious(0) probably_damaging(1) TCGA-HD-8224-01 21 45397973 45397973 C T AGPAT3 Nonsense_Mutation p.Q272* 0.24 TCGA-HD-8224-01 2 121747782 121747782 C T GLI2 Missense_Mutation p.P1431L 0.49 tolerated(0.89) benign(0) TCGA-HD-8224-01 2 152322482 152322482 G T RIF1 Nonsense_Mutation p.E2150* 0.18 TCGA-HD-8224-01 2 209104649 209104649 C A IDH1 Missense_Mutation p.G310V 0.25 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-HD-8224-01 2 211539661 211539661 A G CPS1 Silent p.E1385E 0.24 TCGA-HD-8224-01 2 241570087 241570087 C T GPR35 Missense_Mutation p.R271C 0.06 tolerated(0.1) probably_damaging(0.947) TCGA-HD-8224-01 3 113375895 113375895 G C KIAA2018 Missense_Mutation p.T1545S 0.22 benign(0.006) TCGA-HD-8224-01 3 118865485 118865485 T A C3orf30 Nonsense_Mutation p.L150* 0.20 TCGA-HD-8224-01 3 121973097 121973097 G A CASR Missense_Mutation p.G21R 0.30 deleterious(0.03) probably_damaging(0.984) TCGA-HD-8224-01 3 189702338 189702338 C T LEPREL1 Splice_Site p.X410_splice 0.22 TCGA-HD-8224-01 3 195515925 195515925 C T MUC4 Silent p.Q842Q 0.20 TCGA-HD-8224-01 3 52597491 52597491 C T PBRM1 Silent p.Q1273Q 0.05 TCGA-HD-8224-01 3 53322224 53322224 C T DCP1A Silent p.Q511Q 0.21 TCGA-HD-8224-01 3 98538045 98538045 C T DCBLD2 Splice_Site p.X363_splice 0.33 TCGA-HD-8224-01 4 151168850 151168850 A T DCLK2 Missense_Mutation p.K642M 0.23 deleterious(0.03) possibly_damaging(0.885) TCGA-HD-8224-01 4 38776528 38776528 A G TLR10 Silent p.F228F 0.33 TCGA-HD-8224-01 4 71648884 71648884 T C RUFY3 Missense_Mutation p.L324P 0.17 deleterious(0.05) possibly_damaging(0.864) TCGA-HD-8224-01 4 74270123 74270123 C T ALB Missense_Mutation p.H27Y 0.26 tolerated(0.12) benign(0.001) TCGA-HD-8224-01 4 955594 955594 C G DGKQ Missense_Mutation p.V782L 0.29 tolerated(0.08) possibly_damaging(0.547) TCGA-HD-8224-01 5 140554539 140554539 C T PCDHB7 Missense_Mutation p.A708V 0.06 tolerated_low_confidence(0.13) benign(0.091) TCGA-HD-8224-01 5 141037995 141037995 G A ARAP3 Missense_Mutation p.R1155W 0.09 deleterious(0.03) possibly_damaging(0.632) TCGA-HD-8224-01 5 45645689 45645689 C A HCN1 Missense_Mutation p.M149I 0.24 deleterious(0) benign(0.001) TCGA-HD-8224-01 5 54929599 54929599 G A SLC38A9 Silent p.F471F 0.39 TCGA-HD-8224-01 5 82837453 82837453 A T VCAN Missense_Mutation p.K2877N 0.06 deleterious(0) possibly_damaging(0.691) TCGA-HD-8224-01 5 92923742 92923742 G A NR2F1 Missense_Mutation p.A195T 0.39 deleterious(0.02) probably_damaging(0.949) TCGA-HD-8224-01 5 9629945 9629945 A C TAS2R1 Missense_Mutation p.V67G 0.14 deleterious(0) benign(0.063) TCGA-HD-8224-01 6 144263779 144263779 G A PLAGL1 Silent p.P58P 0.07 TCGA-HD-8224-01 6 147525760 147525760 G A STXBP5 Missense_Mutation p.G31E 0.27 tolerated(1) benign(0.06) TCGA-HD-8224-01 6 152605145 152605145 T C SYNE1 Missense_Mutation p.M6059V 0.19 benign(0.031) TCGA-HD-8224-01 6 16327454 16327454 A G ATXN1 Missense_Mutation p.V363A 0.21 deleterious(0.02) possibly_damaging(0.869) TCGA-HD-8224-01 6 17426915 17426915 G A CAP2 Silent p.E72E 0.08 TCGA-HD-8224-01 6 32026159 32026159 C T TNXB Missense_Mutation p.E2501K 0.21 benign(0.001) TCGA-HD-8224-01 6 49802896 49802896 G A CRISP1 3'UTR 0.14 TCGA-HD-8224-01 6 70070996 70070996 G A BAI3 Silent p.L1277L 0.11 TCGA-HD-8224-01 7 158738284 158738284 G T WDR60 Missense_Mutation p.M1005I 0.43 deleterious(0) benign(0.107) TCGA-HD-8224-01 7 16666772 16666772 T A ANKMY2 Missense_Mutation p.Y55F 0.28 tolerated(0.21) benign(0.124) TCGA-HD-8224-01 7 20371553 20371553 G T ITGB8 Missense_Mutation p.G42C 0.29 tolerated(0.08) benign(0.299) TCGA-HD-8224-01 7 20795117 20795117 C G ABCB5 Missense_Mutation p.S1215C 0.15 deleterious(0) probably_damaging(0.992) TCGA-HD-8224-01 9 105763857 105763857 T C CYLC2 Intron 0.67 TCGA-HD-8224-01 9 140331717 140331717 C T ENTPD8 Missense_Mutation p.E97K 0.11 tolerated(0.2) benign(0.115) TCGA-HD-8224-01 9 36148600 36148600 G A GLIPR2 Missense_Mutation p.R60H 0.47 tolerated(0.18) benign(0.002) TCGA-HD-8224-01 9 71628412 71628432 CAAGGTCCAAGTGCGGCCCTT - PRKACG In_Frame_Del p.K193_L199del 0.45 TCGA-HD-8224-01 X 3235367 3235367 G A MXRA5 Missense_Mutation p.R2119C 0.70 deleterious(0.03) probably_damaging(0.973) TCGA-HD-8224-01 X 89177094 89177094 G A TGIF2LX Missense_Mutation p.A4T 0.53 deleterious_low_confidence(0) benign(0.002) TCGA-HD-8314-01 10 113916931 113916931 G A GPAM Intron 0.19 TCGA-HD-8314-01 10 117045776 117045776 G C ATRNL1 Missense_Mutation p.V762L 0.23 tolerated(0.09) benign(0.001) TCGA-HD-8314-01 10 129904445 129904445 C T MKI67 Missense_Mutation p.E1887K 0.26 tolerated(0.37) possibly_damaging(0.643) TCGA-HD-8314-01 10 48416492 48416492 G A GDF2 Missense_Mutation p.R68C 0.23 deleterious(0) probably_damaging(0.984) TCGA-HD-8314-01 11 129999057 129999057 G T APLP2 Missense_Mutation p.A471S 0.41 deleterious(0.02) probably_damaging(0.987) TCGA-HD-8314-01 11 4626317 4626317 C G TRIM68 Missense_Mutation p.E140Q 0.41 tolerated(0.08) benign(0.16) TCGA-HD-8314-01 11 62592578 62592578 C A STX5 Missense_Mutation p.Q203H 0.20 tolerated(0.53) benign(0.013) TCGA-HD-8314-01 12 100797904 100797904 A C SLC17A8 Missense_Mutation p.Q381P 0.38 tolerated(0.09) benign(0.285) TCGA-HD-8314-01 12 104337073 104337073 G T HSP90B1 Missense_Mutation p.M622I 0.12 tolerated(0.08) benign(0.033) TCGA-HD-8314-01 12 12283759 12283759 G C LRP6 Missense_Mutation p.H1347D 0.29 tolerated(0.23) benign(0.045) TCGA-HD-8314-01 12 40716959 40716959 C T LRRK2 Intron 0.40 TCGA-HD-8314-01 12 6760355 6760355 C A ING4 3'UTR 0.15 TCGA-HD-8314-01 13 111176513 111176513 C T RAB20 Missense_Mutation p.M68I 0.11 deleterious(0.04) possibly_damaging(0.521) TCGA-HD-8314-01 13 113030788 113030788 T C SPACA7 Missense_Mutation p.I30T 0.17 tolerated(1) benign(0) TCGA-HD-8314-01 13 25887887 25887887 C T NUPL1 Missense_Mutation p.S191L 0.27 tolerated(0.21) benign(0.085) TCGA-HD-8314-01 13 33703785 33703785 C T STARD13 Silent p.V343V 0.08 TCGA-HD-8314-01 14 45512902 45512902 G A FAM179B Missense_Mutation p.E1276K 0.43 tolerated(0.23) benign(0.091) TCGA-HD-8314-01 15 62360020 62360020 G A C2CD4A Missense_Mutation p.E70K 0.22 tolerated(0.14) benign(0.01) TCGA-HD-8314-01 15 63073360 63073360 G A TLN2 Missense_Mutation p.E1846K 0.24 tolerated(0.46) benign(0.004) TCGA-HD-8314-01 16 31896534 31896534 G A ZNF267 Silent p.E61E 0.21 TCGA-HD-8314-01 17 10399728 10399728 C G MYH1 Missense_Mutation p.E1599Q 0.21 deleterious(0.01) possibly_damaging(0.833) TCGA-HD-8314-01 17 1673237 1673237 C G SERPINF1 Missense_Mutation p.S59C 0.33 deleterious(0) probably_damaging(1) TCGA-HD-8314-01 17 30348398 30348398 C T LRRC37B Missense_Mutation p.S78F 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-HD-8314-01 17 30348998 30348998 C G LRRC37B Missense_Mutation p.S278C 0.07 deleterious(0) probably_damaging(0.997) TCGA-HD-8314-01 17 40476788 40476788 G T STAT3 Missense_Mutation p.S514Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-HD-8314-01 17 48545767 48545767 A C CHAD Silent p.T136T 0.21 TCGA-HD-8314-01 17 49731041 49731041 C G CA10 Missense_Mutation p.K174N 0.20 tolerated(0.12) possibly_damaging(0.516) TCGA-HD-8314-01 17 64783033 64783033 G C PRKCA Missense_Mutation p.E552Q 0.20 tolerated(0.1) benign(0.415) TCGA-HD-8314-01 17 7752801 7752801 G A KDM6B Silent p.P1065P 0.16 TCGA-HD-8314-01 18 14851603 14851603 G A ANKRD30B Silent p.L1101L 0.38 TCGA-HD-8314-01 19 13011306 13011306 T A SYCE2 Missense_Mutation p.T155S 0.27 tolerated(0.12) benign(0.332) TCGA-HD-8314-01 19 2120904 2120904 C G AP3D1 Missense_Mutation p.E480Q 0.07 deleterious(0.03) possibly_damaging(0.495) TCGA-HD-8314-01 19 38877187 38877187 G T GGN Missense_Mutation p.L239M 0.20 deleterious_low_confidence(0) unknown(0) TCGA-HD-8314-01 19 42187954 42187954 A G CEACAM7 Silent p.N156N 0.32 TCGA-HD-8314-01 19 55672125 55672125 G C DNAAF3 Missense_Mutation p.Q379E 0.10 tolerated(0.52) benign(0.02) TCGA-HD-8314-01 19 9010648 9010648 T C MUC16 Missense_Mutation p.T13005A 0.09 benign(0.117) TCGA-HD-8314-01 19 9090795 9090795 G A MUC16 Silent p.A340A 0.36 TCGA-HD-8314-01 1 11900211 11900211 C T CLCN6 Silent p.I847I 0.46 TCGA-HD-8314-01 1 155887350 155887350 C T KIAA0907 Silent p.Q460Q 0.08 TCGA-HD-8314-01 1 205211155 205211155 G A TMCC2 Missense_Mutation p.E244K 0.21 tolerated(0.19) benign(0.002) TCGA-HD-8314-01 1 237972270 237972270 C T RYR2 Nonsense_Mutation p.R4790* 0.23 TCGA-HD-8314-01 1 248308947 248308947 C G OR2M5 Missense_Mutation p.F166L 0.05 tolerated(0.13) benign(0.308) TCGA-HD-8314-01 1 44365307 44365307 G A ST3GAL3 Missense_Mutation p.E287K 0.20 tolerated(0.18) benign(0.32) TCGA-HD-8314-01 1 52981429 52981429 G C ZCCHC11 Intron 0.42 TCGA-HD-8314-01 1 76779675 76779675 G C ST6GALNAC3 Missense_Mutation p.K68N 0.24 benign(0.187) TCGA-HD-8314-01 1 91790285 91790285 C G HFM1 Missense_Mutation p.E792Q 0.17 tolerated(0.08) benign(0.411) TCGA-HD-8314-01 20 10393947 10393947 G A MKKS Silent p.P72P 0.14 TCGA-HD-8314-01 20 20031214 20031214 C T CRNKL1 Missense_Mutation p.R196K 0.20 tolerated(0.07) possibly_damaging(0.625) TCGA-HD-8314-01 20 23016246 23016246 G A SSTR4 Silent p.A42A 0.17 TCGA-HD-8314-01 20 3102422 3102422 G A UBOX5 Missense_Mutation p.T288I 0.25 deleterious(0) probably_damaging(1) TCGA-HD-8314-01 20 61981275 61981275 G A CHRNA4 Silent p.D496D 0.28 TCGA-HD-8314-01 2 178494022 178494022 C A PDE11A 3'UTR 0.30 TCGA-HD-8314-01 2 179454894 179454894 C T TTN Missense_Mutation p.E20520K 0.38 TCGA-HD-8314-01 2 187455218 187455218 C T ITGAV Silent p.F51F 0.24 TCGA-HD-8314-01 2 231265988 231265988 G C SP140L Intron 0.08 TCGA-HD-8314-01 2 242163156 242163156 G A ANO7 Missense_Mutation p.R885Q 0.33 deleterious(0.04) probably_damaging(0.924) TCGA-HD-8314-01 2 46070195 46070195 G A PRKCE Silent p.S135S 0.31 TCGA-HD-8314-01 3 112545847 112545847 C G CD200R1L Missense_Mutation p.L224F 0.09 deleterious(0) possibly_damaging(0.898) TCGA-HD-8314-01 3 121417477 121417477 T G GOLGB1 Silent p.P631P 0.06 TCGA-HD-8314-01 3 122849361 122849361 C T PDIA5 Missense_Mutation p.P270S 0.09 tolerated(0.15) possibly_damaging(0.792) TCGA-HD-8314-01 3 130682857 130682857 C T ATP2C1 Silent p.V348V 0.13 TCGA-HD-8314-01 3 141327388 141327388 G A RASA2 Missense_Mutation p.E692K 0.10 deleterious(0) probably_damaging(0.996) TCGA-HD-8314-01 3 1418744 1418744 C T CNTN6 Silent p.L717L 0.28 TCGA-HD-8314-01 3 149243913 149243913 C T WWTR1 Splice_Site p.X302_splice 0.23 TCGA-HD-8314-01 3 151165650 151165650 C T IGSF10 Missense_Mutation p.E707K 0.20 tolerated(0.24) benign(0.01) TCGA-HD-8314-01 3 167278011 167278011 G A WDR49 Silent p.I164I 0.15 TCGA-HD-8314-01 3 184033129 184033129 C T EIF4G1 5'Flank 0.34 TCGA-HD-8314-01 3 188592409 188592409 G T LPP 3'UTR 0.27 TCGA-HD-8314-01 3 21465539 21465539 C A ZNF385D Missense_Mutation p.R290S 0.22 deleterious(0) probably_damaging(0.966) TCGA-HD-8314-01 3 64633635 64633635 G A ADAMTS9 Missense_Mutation p.T564M 0.28 deleterious(0) probably_damaging(1) TCGA-HD-8314-01 3 7620617 7620617 C T GRM7 Missense_Mutation p.T675M 0.27 deleterious(0) probably_damaging(0.999) TCGA-HD-8314-01 3 93595847 93595847 C T PROS1 Missense_Mutation p.M611I 0.16 deleterious(0.03) benign(0.443) TCGA-HD-8314-01 4 143094792 143094792 G A INPP4B Missense_Mutation p.S451L 0.25 deleterious(0.02) benign(0.182) TCGA-HD-8314-01 4 159091713 159091713 A G FAM198B Missense_Mutation p.L272S 0.25 tolerated(0.28) possibly_damaging(0.765) TCGA-HD-8314-01 4 4276361 4276362 TT - LYAR Frame_Shift_Del p.E190Kfs*31 0.12 TCGA-HD-8314-01 4 85741276 85741276 G C WDFY3 Missense_Mutation p.T552S 0.28 tolerated(0.22) benign(0.028) TCGA-HD-8314-01 5 137780952 137780952 C T REEP2 Silent p.F149F 0.33 TCGA-HD-8314-01 5 140044531 140044531 G A WDR55 Missense_Mutation p.D12N 0.14 tolerated_low_confidence(0.24) benign(0.002) TCGA-HD-8314-01 5 140202157 140202157 C G PCDHA5 Nonsense_Mutation p.S266* 0.23 TCGA-HD-8314-01 5 150029326 150029326 G T SYNPO Nonsense_Mutation p.E741* 0.35 TCGA-HD-8314-01 5 150311204 150311204 G A ZNF300P1 RNA 0.19 TCGA-HD-8314-01 5 71411527 71411527 A C MAP1B Missense_Mutation p.I63L 0.38 unknown(0) TCGA-HD-8314-01 6 160500709 160500709 C T IGF2R Missense_Mutation p.S1859L 0.22 deleterious(0.05) probably_damaging(0.946) TCGA-HD-8314-01 6 168265244 168265244 A G MLLT4 Missense_Mutation p.H40R 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-HD-8314-01 6 26377019 26377019 A G BTN3A2 3'UTR 0.32 TCGA-HD-8314-01 6 47754305 47754305 A G OPN5 Missense_Mutation p.K62R 0.10 tolerated(0.53) benign(0.06) TCGA-HD-8314-01 7 128482910 128482910 G A FLNC Missense_Mutation p.D818N 0.23 deleterious(0.02) probably_damaging(0.947) TCGA-HD-8314-01 7 56006940 56006940 G A ZNF713 Silent p.L178L 0.35 TCGA-HD-8314-01 8 139190891 139190891 C A FAM135B Missense_Mutation p.D306Y 0.35 deleterious(0) probably_damaging(0.99) TCGA-HD-8314-01 9 107562201 107562201 G A ABCA1 Silent p.L1614L 0.25 TCGA-HD-8314-01 9 18474124 18474124 G A ADAMTSL1 5'UTR 0.32 TCGA-HD-8314-01 X 118977252 118977252 C T UPF3B Missense_Mutation p.R161K 0.12 tolerated(1) benign(0.08) TCGA-HD-8314-01 X 150817168 150817168 C G PASD1 Missense_Mutation p.I237M 0.68 tolerated(0.27) benign(0.437) TCGA-HD-8634-01 10 105815542 105815542 T C COL17A1 Missense_Mutation p.N562S 0.12 unknown(0) TCGA-HD-8634-01 10 125769719 125769719 G A CHST15 Silent p.N544N 0.16 TCGA-HD-8634-01 10 32311168 32311168 C T KIF5B Silent p.K644K 0.09 TCGA-HD-8634-01 10 43089526 43089526 G C ZNF33B Missense_Mutation p.S291C 0.19 tolerated(0.06) possibly_damaging(0.492) TCGA-HD-8634-01 10 50960022 50960022 G T OGDHL Silent p.T200T 0.09 TCGA-HD-8634-01 11 108381234 108381234 T A EXPH5 Missense_Mutation p.K1667M 0.18 deleterious(0.01) possibly_damaging(0.62) TCGA-HD-8634-01 11 1156628 1156628 C T MUC5AC Silent p.N215N 0.09 TCGA-HD-8634-01 11 47259428 47259428 G A DDB2 Missense_Mutation p.R355Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-HD-8634-01 11 82922403 82922403 G A ANKRD42 Missense_Mutation p.G145S 0.07 tolerated(0.06) probably_damaging(1) TCGA-HD-8634-01 12 123344033 123344033 G A HIP1R Missense_Mutation p.E786K 0.16 deleterious(0) probably_damaging(0.997) TCGA-HD-8634-01 12 2786382 2786382 C A CACNA1C Missense_Mutation p.L1699M 0.11 deleterious(0) benign(0.117) TCGA-HD-8634-01 13 110830547 110830547 G C COL4A1 Missense_Mutation p.F830L 0.10 benign(0.036) TCGA-HD-8634-01 13 49070352 49070352 G A RCBTB2 Missense_Mutation p.S497L 0.09 deleterious(0.01) benign(0.139) TCGA-HD-8634-01 14 36004851 36004851 G A INSM2 Missense_Mutation p.G465S 0.13 tolerated(0.47) benign(0.006) TCGA-HD-8634-01 14 64749721 64749721 G A ESR2 5'UTR 0.09 TCGA-HD-8634-01 14 75264903 75264903 G C YLPM1 Missense_Mutation p.G968A 0.06 benign(0.084) TCGA-HD-8634-01 14 94088832 94088832 G T UNC79 Missense_Mutation p.Q1574H 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.532) TCGA-HD-8634-01 14 94088895 94088895 G C UNC79 Missense_Mutation p.E1595D 0.10 tolerated_low_confidence(0.6) benign(0.001) TCGA-HD-8634-01 15 43668716 43668716 C G TUBGCP4 Missense_Mutation p.Q75E 0.14 tolerated(0.99) benign(0.025) TCGA-HD-8634-01 15 43820734 43820734 G A MAP1A Missense_Mutation p.E2355K 0.11 benign(0.008) TCGA-HD-8634-01 15 60907184 60907184 T C RORA Intron 0.09 TCGA-HD-8634-01 15 92459324 92459324 C T SLCO3A1 Silent p.L94L 0.17 TCGA-HD-8634-01 16 338134 338134 C G AXIN1 Missense_Mutation p.E859D 0.05 deleterious(0.02) benign(0.436) TCGA-HD-8634-01 16 74511429 74511429 G C GLG1 Silent p.L610L 0.16 TCGA-HD-8634-01 17 27064746 27064746 G A NEK8 Missense_Mutation p.R294H 0.14 deleterious(0.01) possibly_damaging(0.487) TCGA-HD-8634-01 17 37762279 37762279 G A NEUROD2 Silent p.L192L 0.10 TCGA-HD-8634-01 17 53797957 53797957 C G TMEM100 3'UTR 0.18 TCGA-HD-8634-01 17 74005143 74005143 G C EVPL Missense_Mutation p.D1381E 0.13 deleterious(0) probably_damaging(0.996) TCGA-HD-8634-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.37 deleterious(0) probably_damaging(0.986) TCGA-HD-8634-01 18 72999603 72999603 C T TSHZ1 Silent p.S702S 0.17 TCGA-HD-8634-01 19 19748784 19748784 C T GMIP Missense_Mutation p.R291Q 0.13 deleterious(0.01) possibly_damaging(0.85) TCGA-HD-8634-01 19 36213897 36213897 A T KMT2B Missense_Mutation p.D908V 0.14 possibly_damaging(0.637) TCGA-HD-8634-01 19 51361452 51361452 G A KLK3 Missense_Mutation p.R125H 0.08 tolerated(0.12) benign(0.304) TCGA-HD-8634-01 1 114269129 114269129 G A PHTF1 Silent p.C133C 0.08 TCGA-HD-8634-01 1 11918436 11918436 C A NPPB Missense_Mutation p.G75C 0.09 deleterious(0.02) benign(0.346) TCGA-HD-8634-01 1 157771735 157771735 G A FCRL1 Missense_Mutation p.R286C 0.23 tolerated(0.15) benign(0.082) TCGA-HD-8634-01 1 161480679 161480679 G A FCGR2A Silent p.A225A 0.06 TCGA-HD-8634-01 1 196711010 196711010 G T CFH Missense_Mutation p.D988Y 0.16 tolerated(0.1) benign(0.149) TCGA-HD-8634-01 1 248685383 248685383 G A OR2G6 Missense_Mutation p.G146S 0.13 tolerated(0.87) benign(0.002) TCGA-HD-8634-01 1 28598377 28598378 - T SESN2 Frame_Shift_Ins p.M118Hfs*25 0.22 TCGA-HD-8634-01 20 60890184 60890184 C T LAMA5 Silent p.Q2649Q 0.16 TCGA-HD-8634-01 21 40650738 40650738 G A BRWD1 Missense_Mutation p.P312S 0.07 tolerated(0.23) benign(0.141) TCGA-HD-8634-01 2 159522944 159522944 C T PKP4 Missense_Mutation p.A866V 0.15 tolerated(0.05) possibly_damaging(0.684) TCGA-HD-8634-01 2 160082198 160082198 G A TANC1 Splice_Site p.X1271_splice 0.11 TCGA-HD-8634-01 2 202257694 202257694 G A TRAK2 Missense_Mutation p.R351C 0.17 deleterious(0) probably_damaging(0.998) TCGA-HD-8634-01 2 213872067 213872067 C A IKZF2 3'UTR 0.11 TCGA-HD-8634-01 2 242707144 242707144 C G D2HGDH Silent p.L442L 0.14 TCGA-HD-8634-01 2 27521506 27521506 G A TRIM54 Silent p.S80S 0.09 TCGA-HD-8634-01 2 43970042 43970042 G A PLEKHH2 Missense_Mutation p.M1128I 0.13 tolerated(0.07) benign(0.017) TCGA-HD-8634-01 2 61336370 61336370 C G KIAA1841 Silent p.T561T 0.05 TCGA-HD-8634-01 2 74783880 74783881 - T DOK1 Frame_Shift_Ins p.D363* 0.13 TCGA-HD-8634-01 3 130282214 130282214 G A COL6A6 Missense_Mutation p.A123T 0.10 tolerated(1) benign(0.003) TCGA-HD-8634-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.18 tolerated(0.11) possibly_damaging(0.529) TCGA-HD-8634-01 3 48309526 48309526 A C ZNF589 Missense_Mutation p.Q115H 0.23 tolerated(1) possibly_damaging(0.781) TCGA-HD-8634-01 4 110791755 110791755 G T LRIT3 Missense_Mutation p.W617L 0.09 tolerated(0.32) probably_damaging(0.932) TCGA-HD-8634-01 4 39314498 39314500 CTC - RFC1 In_Frame_Del p.E419del 0.22 TCGA-HD-8634-01 4 71510180 71510180 G A ENAM Missense_Mutation p.D1013N 0.14 tolerated(0.55) benign(0.149) TCGA-HD-8634-01 4 99579390 99579390 T C TSPAN5 5'UTR 0.10 TCGA-HD-8634-01 5 137715387 137715387 C T KDM3B Missense_Mutation p.S232F 0.13 deleterious(0.01) benign(0.388) TCGA-HD-8634-01 5 140229446 140229446 G A PCDHA9 Missense_Mutation p.A456T 0.12 tolerated_low_confidence(0.07) benign(0.003) TCGA-HD-8634-01 5 140559724 140559724 C T PCDHB8 Silent p.L703L 0.14 TCGA-HD-8634-01 5 140768073 140768073 T C PCDHGB4 Missense_Mutation p.Y208H 0.18 tolerated(1) benign(0.009) TCGA-HD-8634-01 5 178393102 178393102 G T ZNF454 3'UTR 0.29 TCGA-HD-8634-01 5 34033456 34033457 - A C1QTNF3 Frame_Shift_Ins p.G175Wfs*40 0.10 TCGA-HD-8634-01 5 82786270 82786270 A G VCAN Missense_Mutation p.T142A 0.19 tolerated(0.06) benign(0.055) TCGA-HD-8634-01 6 133846228 133846228 G C EYA4 Intron 0.11 TCGA-HD-8634-01 6 1930368 1930368 C T GMDS Missense_Mutation p.R247Q 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HD-8634-01 6 52957298 52957298 C T FBXO9 Missense_Mutation p.T252M 0.17 tolerated(0.1) benign(0.157) TCGA-HD-8634-01 7 106826320 106826320 C T HBP1 Missense_Mutation p.S158F 0.09 deleterious(0.02) possibly_damaging(0.467) TCGA-HD-8634-01 7 127965882 127965882 G A RBM28 Missense_Mutation p.P398S 0.11 tolerated(0.33) possibly_damaging(0.527) TCGA-HD-8634-01 7 75511238 75511238 C T RHBDD2 Silent p.F90F 0.08 TCGA-HD-8634-01 7 927057 927057 G A GET4 Missense_Mutation p.V123M 0.22 tolerated(0.12) benign(0.166) TCGA-HD-8634-01 7 99696765 99696765 C G MCM7 Missense_Mutation p.D155H 0.06 tolerated(0.09) benign(0.416) TCGA-HD-8634-01 8 125463147 125463147 G A TRMT12 5'UTR 0.44 TCGA-HD-8634-01 8 68419123 68419123 G C CPA6 Missense_Mutation p.L179V 0.11 tolerated(1) benign(0.26) TCGA-HD-8634-01 8 93017372 93017372 C T RUNX1T1 Missense_Mutation p.E249K 0.07 deleterious(0.02) possibly_damaging(0.887) TCGA-HD-8634-01 9 115805689 115805689 C T ZFP37 Silent p.K403K 0.07 TCGA-HD-8634-01 9 139092480 139092480 C T LHX3 Missense_Mutation p.E72K 0.09 tolerated(0.06) benign(0.105) TCGA-HD-8634-01 9 27949108 27949108 G T LINGO2 Missense_Mutation p.S521Y 0.36 tolerated(1) benign(0.005) TCGA-HD-8634-01 9 35562534 35562534 G A FAM166B Silent p.F194F 0.22 TCGA-HD-8634-01 9 6014242 6014242 G A RANBP6 Missense_Mutation p.R456C 0.07 tolerated(0.05) benign(0.195) TCGA-HD-8634-01 X 110491150 110491150 G C CAPN6 Missense_Mutation p.Q519E 0.13 tolerated(0.16) possibly_damaging(0.523) TCGA-HD-8634-01 X 11316948 11316948 C T AMELX Missense_Mutation p.P156L 0.11 deleterious(0) unknown(0) TCGA-HD-8634-01 X 118893114 118893114 G A SOWAHD Missense_Mutation p.E162K 0.30 deleterious(0) probably_damaging(0.975) TCGA-HD-8634-01 X 123657466 123657466 G A TENM1 Silent p.L927L 0.09 TCGA-HD-8634-01 X 12712510 12712510 C T FRMPD4 Silent p.V290V 0.21 TCGA-HD-8634-01 X 140994852 140994852 G A MAGEC1 Silent p.Q554Q 0.18 TCGA-HD-8634-01 X 18660025 18660025 C T RS1 3'UTR 0.18 TCGA-HD-8634-01 X 19425376 19425376 A C MAP3K15 Missense_Mutation p.C592G 0.18 deleterious(0) probably_damaging(0.974) TCGA-HD-8634-01 X 67421524 67421524 C A OPHN1 Missense_Mutation p.C321F 0.09 deleterious(0) probably_damaging(0.998) TCGA-HD-8634-01 X 77287021 77287021 A G ATP7A Missense_Mutation p.T1079A 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-HD-8635-01 10 104233349 104233349 T C TMEM180 Silent p.H316H 0.19 TCGA-HD-8635-01 10 116605222 116605222 C T FAM160B1 Silent p.L370L 0.29 TCGA-HD-8635-01 10 48428702 48428702 A G GDF10 Missense_Mutation p.I395T 0.19 deleterious(0) possibly_damaging(0.849) TCGA-HD-8635-01 10 55996672 55996672 A G PCDH15 Missense_Mutation p.I299T 0.27 tolerated(1) benign(0.002) TCGA-HD-8635-01 10 72299451 72299451 G T PALD1 Missense_Mutation p.R614L 0.21 tolerated(0.17) benign(0.11) TCGA-HD-8635-01 11 107427549 107427549 C G ALKBH8 Missense_Mutation p.E104Q 0.60 tolerated(0.15) benign(0.052) TCGA-HD-8635-01 11 113860273 113860273 C A HTR3A Silent p.R447R 0.57 TCGA-HD-8635-01 11 130060365 130060365 C A ST14 Silent p.G217G 0.09 TCGA-HD-8635-01 11 2356559 2356559 C G CD81-AS1 Intron 0.29 TCGA-HD-8635-01 11 33049326 33049326 C T DEPDC7 Missense_Mutation p.H187Y 0.28 deleterious(0.03) benign(0.001) TCGA-HD-8635-01 11 4825504 4825504 G T OR52R1 Missense_Mutation p.A36D 0.26 deleterious(0.02) possibly_damaging(0.52) TCGA-HD-8635-01 11 4825505 4825505 C T OR52R1 Missense_Mutation p.A36T 0.25 tolerated(0.64) benign(0.15) TCGA-HD-8635-01 11 5246812 5246812 C G HBB 3'UTR 0.34 TCGA-HD-8635-01 11 56230395 56230395 A G OR5M9 Silent p.T161T 0.26 TCGA-HD-8635-01 11 62374514 62374514 G C EML3 Missense_Mutation p.L474V 0.24 tolerated(0.23) probably_damaging(0.997) TCGA-HD-8635-01 11 64001429 64001429 C A DNAJC4 Nonsense_Mutation p.Y197* 0.07 TCGA-HD-8635-01 11 64876853 64876853 G A VPS51 Silent p.K515K 0.40 TCGA-HD-8635-01 11 66103882 66103882 G A RIN1 5'UTR 0.25 TCGA-HD-8635-01 11 67051382 67051382 A T ADRBK1 Missense_Mutation p.I485F 0.39 deleterious(0) probably_damaging(0.997) TCGA-HD-8635-01 11 68822821 68822821 G A TPCN2 Splice_Site p.X143_splice 0.50 TCGA-HD-8635-01 11 77884781 77884781 C T KCTD21 3'UTR 0.54 TCGA-HD-8635-01 11 84028326 84028326 C G DLG2 Intron 0.25 TCGA-HD-8635-01 12 108920071 108920071 G A SART3 Silent p.L725L 0.17 TCGA-HD-8635-01 12 132399963 132399963 C G ULK1 Missense_Mutation p.P536A 0.36 tolerated(0.19) benign(0.004) TCGA-HD-8635-01 12 132627407 132627407 G C DDX51 Missense_Mutation p.P179R 0.18 deleterious(0) probably_damaging(1) TCGA-HD-8635-01 12 14794056 14794056 C T GUCY2C Silent p.R676R 0.37 TCGA-HD-8635-01 12 25261671 25261671 C G CASC1 Missense_Mutation p.K660N 0.10 deleterious(0) probably_damaging(0.972) TCGA-HD-8635-01 12 27132839 27132839 C T TM7SF3 Missense_Mutation p.S356N 0.24 tolerated(0.08) possibly_damaging(0.511) TCGA-HD-8635-01 12 30792496 30792496 A G IPO8 Silent p.T814T 0.26 TCGA-HD-8635-01 12 49416416 49416416 C T KMT2D Missense_Mutation p.R5432Q 0.26 unknown(0) TCGA-HD-8635-01 12 56915740 56915740 C A RBMS2 5'UTR 0.18 TCGA-HD-8635-01 12 57112023 57112023 T C NACA Intron 0.26 TCGA-HD-8635-01 12 64813997 64813997 G T XPOT Missense_Mutation p.V213F 0.21 deleterious(0) probably_damaging(0.942) TCGA-HD-8635-01 12 69279634 69279634 G C CPM Missense_Mutation p.P66A 0.21 deleterious(0) probably_damaging(0.999) TCGA-HD-8635-01 12 93873187 93873187 C A MRPL42 Missense_Mutation p.S53Y 0.35 deleterious(0.01) possibly_damaging(0.566) TCGA-HD-8635-01 13 100020049 100020049 G C UBAC2 Missense_Mutation p.M272I 0.20 tolerated(0.19) benign(0) TCGA-HD-8635-01 13 111160475 111160475 G T COL4A2 Silent p.P1596P 0.09 TCGA-HD-8635-01 13 96505887 96505887 C G UGGT2 Missense_Mutation p.K1398N 0.33 deleterious(0) probably_damaging(0.958) TCGA-HD-8635-01 14 101441178 101441178 T A SNORD114-17 RNA 0.29 TCGA-HD-8635-01 14 105452973 105452973 C G C14orf79 Missense_Mutation p.P69A 0.26 tolerated(0.22) benign(0.022) TCGA-HD-8635-01 14 20216398 20216398 T C OR4Q3 Missense_Mutation p.I271T 0.21 tolerated(0.15) benign(0.119) TCGA-HD-8635-01 14 21928596 21928596 G T RAB2B 3'UTR 0.33 TCGA-HD-8635-01 14 24806948 24806948 C A RIPK3 Nonsense_Mutation p.E285* 0.18 TCGA-HD-8635-01 14 44976017 44976017 A T FSCB Silent p.T58T 0.17 TCGA-HD-8635-01 14 64675494 64675494 G A SYNE2 Missense_Mutation p.E6074K 0.28 probably_damaging(0.999) TCGA-HD-8635-01 14 68191258 68191258 G A RDH12 Missense_Mutation p.G46D 0.23 deleterious(0) probably_damaging(1) TCGA-HD-8635-01 14 71444820 71444820 C G PCNX Missense_Mutation p.T589S 0.21 tolerated_low_confidence(0.36) benign(0.002) TCGA-HD-8635-01 14 77873011 77873011 T A NOXRED1 Intron 0.25 TCGA-HD-8635-01 15 22855171 22855171 G T TUBGCP5 Missense_Mutation p.R544S 0.26 deleterious(0.02) possibly_damaging(0.456) TCGA-HD-8635-01 15 28234814 28234814 T A OCA2 Splice_Site p.X373_splice 0.19 TCGA-HD-8635-01 15 34610823 34610823 C A SLC12A6 Intron 0.21 TCGA-HD-8635-01 15 38792304 38792304 C G RASGRP1 Missense_Mutation p.D574H 0.21 deleterious(0) probably_damaging(0.999) TCGA-HD-8635-01 15 39885673 39885673 G C THBS1 Missense_Mutation p.G1024A 0.10 deleterious(0.03) probably_damaging(0.975) TCGA-HD-8635-01 15 50271897 50271897 C G ATP8B4 Missense_Mutation p.K317N 0.19 tolerated(0.54) benign(0.015) TCGA-HD-8635-01 15 55838669 55838669 A G PYGO1 Missense_Mutation p.I271T 0.22 tolerated(0.58) benign(0) TCGA-HD-8635-01 15 55919293 55919293 G C PRTG Nonsense_Mutation p.S947* 0.20 TCGA-HD-8635-01 15 57925925 57925925 G C GCOM1 Missense_Mutation p.E307Q 0.12 tolerated(0.69) benign(0.037) TCGA-HD-8635-01 15 62226518 62226518 C A VPS13C Missense_Mutation p.W1923L 0.18 tolerated(0.84) benign(0) TCGA-HD-8635-01 15 94899283 94899283 G A MCTP2 Intron 0.18 TCGA-HD-8635-01 16 1250445 1250445 C T CACNA1H Silent p.G331G 0.18 TCGA-HD-8635-01 16 19087047 19087047 G A COQ7 Silent p.A124A 0.24 TCGA-HD-8635-01 16 19628032 19628032 C T C16orf62 Nonsense_Mutation p.Q465* 0.23 TCGA-HD-8635-01 16 28328856 28328856 C T SBK1 Silent p.D48D 0.29 TCGA-HD-8635-01 16 29827930 29827930 C G PAGR1 Silent p.L28L 0.47 TCGA-HD-8635-01 16 30097569 30097580 CATCCAGATAGC - TBX6 In_Frame_Del p.G426_D429del 0.14 TCGA-HD-8635-01 16 30528404 30528404 G T ITGAL Missense_Mutation p.Q991H 0.23 deleterious(0.04) benign(0.033) TCGA-HD-8635-01 16 31422660 31422660 G A ITGAD Missense_Mutation p.R510H 0.23 tolerated(0.41) benign(0.004) TCGA-HD-8635-01 16 46731459 46731459 G A ORC6 Missense_Mutation p.E241K 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-HD-8635-01 16 57241994 57241994 G T RSPRY1 Missense_Mutation p.M125I 0.14 tolerated(0.07) benign(0.196) TCGA-HD-8635-01 16 66973251 66973251 C G CES2 Missense_Mutation p.S202C 0.26 deleterious(0) probably_damaging(0.992) TCGA-HD-8635-01 16 67410682 67410682 G A LRRC36 Silent p.P571P 0.21 TCGA-HD-8635-01 16 67914646 67914646 G C EDC4 Missense_Mutation p.E762Q 0.20 tolerated(0.37) benign(0.005) TCGA-HD-8635-01 16 68269783 68269783 C G ESRP2 Missense_Mutation p.V56L 0.16 tolerated(0.22) probably_damaging(0.995) TCGA-HD-8635-01 16 9186809 9186809 C G C16orf72 Silent p.L86L 0.24 TCGA-HD-8635-01 17 17880912 17880912 G T LRRC48 5'UTR 0.30 TCGA-HD-8635-01 17 3448490 3448490 G C TRPV3 Silent p.S65S 0.12 TCGA-HD-8635-01 17 42248181 42248181 C T ASB16 Silent p.F8F 0.41 TCGA-HD-8635-01 17 48753913 48753913 C A ABCC3 Silent p.V1114V 0.33 TCGA-HD-8635-01 17 73265430 73265430 C G MIF4GD Missense_Mutation p.R68T 0.15 tolerated(0.57) benign(0) TCGA-HD-8635-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.32 deleterious(0) probably_damaging(1) TCGA-HD-8635-01 17 76422537 76422537 C A DNAH17 Splice_Site p.X4328_splice 0.67 TCGA-HD-8635-01 17 76694913 76694913 C T CYTH1 Missense_Mutation p.E230K 0.31 deleterious(0.01) benign(0.239) TCGA-HD-8635-01 17 79409906 79409906 C T RP11-1055B8.7 Missense_Mutation p.P511S 0.16 benign(0.007) TCGA-HD-8635-01 18 13055849 13055849 T A CEP192 Missense_Mutation p.M1087K 0.33 tolerated(0.97) benign(0.006) TCGA-HD-8635-01 18 32949319 32949319 G A ZNF396 Nonsense_Mutation p.R290* 0.25 TCGA-HD-8635-01 18 48603047 48603047 C T SMAD4 Nonsense_Mutation p.Q450* 0.33 TCGA-HD-8635-01 19 1053787 1053787 A T ABCA7 Missense_Mutation p.I1142F 0.29 deleterious(0) possibly_damaging(0.883) TCGA-HD-8635-01 19 10930720 10930724 TCATG - DNM2 Frame_Shift_Del p.M580Qfs*27 0.22 TCGA-HD-8635-01 19 12154831 12154831 G T ZNF878 Missense_Mutation p.S462Y 0.16 tolerated(1) possibly_damaging(0.516) TCGA-HD-8635-01 19 17942116 17942116 C G JAK3 Missense_Mutation p.D967H 0.17 deleterious(0) probably_damaging(0.999) TCGA-HD-8635-01 19 44001253 44001253 G A PHLDB3 Intron 0.24 TCGA-HD-8635-01 19 46136150 46136150 C G EML2 Missense_Mutation p.R361T 0.21 deleterious(0) possibly_damaging(0.791) TCGA-HD-8635-01 19 48967826 48967826 A T KCNJ14 Missense_Mutation p.E368V 0.18 deleterious(0) probably_damaging(0.948) TCGA-HD-8635-01 19 49436936 49436936 C T DHDH 5'Flank 0.27 TCGA-HD-8635-01 19 49481247 49481247 G T GYS1 Silent p.P414P 0.27 TCGA-HD-8635-01 19 50978661 50978661 A G FAM71E1 Missense_Mutation p.S138P 0.15 deleterious(0) probably_damaging(0.982) TCGA-HD-8635-01 19 54711474 54711474 G T RPS9 3'UTR 0.46 TCGA-HD-8635-01 19 57066870 57066870 A G ZFP28 3'UTR 0.23 TCGA-HD-8635-01 19 58130829 58130829 G A ZNF134 5'UTR 0.18 TCGA-HD-8635-01 19 8959696 8959696 C T MUC16 Missense_Mutation p.R14479H 0.33 probably_damaging(0.923) TCGA-HD-8635-01 1 103483409 103483409 G A COL11A1 Silent p.G460G 0.33 TCGA-HD-8635-01 1 110086737 110086737 G C GPR61 Missense_Mutation p.E365Q 0.46 tolerated(0.5) benign(0.402) TCGA-HD-8635-01 1 114682285 114682285 C T SYT6 Missense_Mutation p.R70H 0.43 tolerated(0.46) possibly_damaging(0.818) TCGA-HD-8635-01 1 117619276 117619276 G C TTF2 Missense_Mutation p.K468N 0.09 tolerated(0.21) benign(0.013) TCGA-HD-8635-01 1 119575787 119575787 G A WARS2 Missense_Mutation p.A277V 0.16 tolerated(0.28) possibly_damaging(0.542) TCGA-HD-8635-01 1 12316413 12316413 G C VPS13D Missense_Mutation p.E231D 0.09 probably_damaging(0.916) TCGA-HD-8635-01 1 147092152 147092152 C G BCL9 Missense_Mutation p.Q731E 0.26 deleterious(0.04) benign(0.01) TCGA-HD-8635-01 1 156236414 156236414 G A SMG5 Silent p.L391L 0.27 TCGA-HD-8635-01 1 156453085 156453085 C A MEF2D 5'UTR 0.25 TCGA-HD-8635-01 1 162302876 162302876 C A NOS1AP Missense_Mutation p.S138R 0.17 deleterious(0) probably_damaging(0.992) TCGA-HD-8635-01 1 16255478 16255478 C T SPEN Nonsense_Mutation p.Q915* 0.06 TCGA-HD-8635-01 1 16577604 16577604 G A FBXO42 Missense_Mutation p.S572L 0.22 deleterious_low_confidence(0.03) benign(0.037) TCGA-HD-8635-01 1 176564577 176564577 C G PAPPA2 Missense_Mutation p.R613G 0.15 tolerated(0.07) possibly_damaging(0.809) TCGA-HD-8635-01 1 202124662 202124662 C G PTPN7 Missense_Mutation p.R261P 0.28 tolerated(0.12) probably_damaging(1) TCGA-HD-8635-01 1 205073025 205073025 C T RBBP5 Missense_Mutation p.R161K 0.21 tolerated(0.26) benign(0.003) TCGA-HD-8635-01 1 22850916 22850916 C T ZBTB40 Silent p.A1168A 0.35 TCGA-HD-8635-01 1 247752053 247752053 G A OR2G2 Missense_Mutation p.R131H 0.13 tolerated(0.09) benign(0.014) TCGA-HD-8635-01 1 25717249 25717249 C T RHCE Silent p.K264K 0.26 TCGA-HD-8635-01 1 26881104 26881104 G C RPS6KA1 Missense_Mutation p.E220Q 0.13 tolerated(0.13) possibly_damaging(0.856) TCGA-HD-8635-01 1 27099905 27099905 C T ARID1A Missense_Mutation p.R1262C 0.11 unknown(0) TCGA-HD-8635-01 1 27226714 27226714 C T GPATCH3 Missense_Mutation p.E74K 0.21 tolerated(0.28) benign(0.016) TCGA-HD-8635-01 1 28816371 28816371 G C PHACTR4 Intron 0.15 TCGA-HD-8635-01 1 28858861 28858861 G A RCC1 Missense_Mutation p.R178Q 0.24 deleterious(0.02) benign(0.251) TCGA-HD-8635-01 1 39798666 39798666 C T MACF1 Intron 0.44 TCGA-HD-8635-01 1 41213250 41213250 G A NFYC Silent p.K50K 0.22 TCGA-HD-8635-01 1 43212576 43212576 C T LEPRE1 3'UTR 0.20 TCGA-HD-8635-01 1 44087693 44087693 C T PTPRF 3'UTR 0.27 TCGA-HD-8635-01 1 45793750 45793750 G - HPDL Frame_Shift_Del p.I312Sfs*3 0.24 TCGA-HD-8635-01 1 52840499 52840499 C T ORC1 Missense_Mutation p.E792K 0.12 deleterious(0) probably_damaging(1) TCGA-HD-8635-01 1 75055746 75055746 G T C1orf173 Nonsense_Mutation p.S582* 0.45 TCGA-HD-8635-01 1 75679473 75679473 G T SLC44A5 Missense_Mutation p.L627M 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-HD-8635-01 1 78267146 78267146 C G FAM73A Missense_Mutation p.P109R 0.27 tolerated(0.05) probably_damaging(0.945) TCGA-HD-8635-01 1 87033303 87033303 C T CLCA4 Missense_Mutation p.S384F 0.28 deleterious(0.02) benign(0.429) TCGA-HD-8635-01 1 900541 900541 G A KLHL17 Silent p.P633P 0.32 TCGA-HD-8635-01 1 99772192 99772192 G A LPPR4 Missense_Mutation p.E640K 0.26 tolerated(0.18) probably_damaging(0.952) TCGA-HD-8635-01 20 42198105 42198105 C T SGK2 Silent p.F163F 0.25 TCGA-HD-8635-01 20 52830980 52830980 G A PFDN4 Missense_Mutation p.E39K 0.25 deleterious(0) probably_damaging(0.933) TCGA-HD-8635-01 20 55917836 55917836 G T SPO11 Missense_Mutation p.M337I 0.15 tolerated(0.19) benign(0.001) TCGA-HD-8635-01 20 57599431 57599431 T C TUBB1 Missense_Mutation p.F317L 0.08 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-HD-8635-01 20 57766863 57766863 C G ZNF831 Silent p.T263T 0.20 TCGA-HD-8635-01 20 5932699 5932699 G A MCM8 Missense_Mutation p.G13E 0.22 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-HD-8635-01 20 7886943 7886943 A G HAO1 Silent p.F193F 0.16 TCGA-HD-8635-01 21 35107450 35107450 C G ITSN1 Missense_Mutation p.S96C 0.17 deleterious(0.04) unknown(0) TCGA-HD-8635-01 22 20102384 20102384 C T TRMT2A Missense_Mutation p.E341K 0.31 deleterious(0) benign(0.041) TCGA-HD-8635-01 22 31500330 31500330 G A SMTN Missense_Mutation p.E901K 0.13 deleterious(0) possibly_damaging(0.824) TCGA-HD-8635-01 22 32161047 32161047 G A DEPDC5 Splice_Site p.X93_splice 0.18 TCGA-HD-8635-01 2 159389695 159389695 G C PKP4 5'UTR 0.20 TCGA-HD-8635-01 2 169938300 169938300 A T DHRS9 Missense_Mutation p.K70M 0.28 deleterious(0) possibly_damaging(0.834) TCGA-HD-8635-01 2 186672165 186672165 G T FSIP2 Silent p.L6133L 0.18 TCGA-HD-8635-01 2 197004523 197004523 C G STK17B Missense_Mutation p.W219C 0.11 deleterious(0.01) probably_damaging(1) TCGA-HD-8635-01 2 21234944 21234944 C T APOB Missense_Mutation p.R1599H 0.17 benign(0.028) TCGA-HD-8635-01 2 213921699 213921699 G A IKZF2 Silent p.S88S 0.18 TCGA-HD-8635-01 2 215809784 215809784 G C ABCA12 Silent p.L2428L 0.12 TCGA-HD-8635-01 2 215852510 215852510 G A ABCA12 Silent p.Y1279Y 0.28 TCGA-HD-8635-01 2 219892531 219892531 G T CCDC108 Silent p.I684I 0.15 TCGA-HD-8635-01 2 233408064 233408064 G T CHRNG Silent p.V295V 0.24 TCGA-HD-8635-01 2 239049882 239049882 G C KLHL30 Missense_Mutation p.E163Q 0.18 tolerated(0.12) probably_damaging(1) TCGA-HD-8635-01 2 42557000 42557000 A C EML4 Missense_Mutation p.K867Q 0.28 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-HD-8635-01 2 61510333 61510333 C A USP34 Missense_Mutation p.D1649Y 0.13 deleterious(0.01) benign(0.438) TCGA-HD-8635-01 2 80530254 80530254 G T LRRTM1 Missense_Mutation p.R231S 0.24 deleterious(0) probably_damaging(0.987) TCGA-HD-8635-01 2 8822472 8822472 G A ID2 Silent p.V59V 0.27 TCGA-HD-8635-01 2 96993392 96993392 C G ITPRIPL1 Silent p.L349L 0.17 TCGA-HD-8635-01 2 97527348 97527348 G A SEMA4C Missense_Mutation p.S547L 0.24 tolerated(0.2) benign(0.014) TCGA-HD-8635-01 2 97527623 97527623 G A SEMA4C Silent p.L484L 0.20 TCGA-HD-8635-01 2 97531481 97531481 G A SEMA4C Silent p.I114I 0.10 TCGA-HD-8635-01 3 121411137 121411137 C G GOLGB1 Missense_Mutation p.K2358N 0.24 probably_damaging(0.979) TCGA-HD-8635-01 3 124454085 124454085 A G UMPS Missense_Mutation p.K101R 0.24 deleterious(0) probably_damaging(0.936) TCGA-HD-8635-01 3 132063882 132063882 G C ACPP Missense_Mutation p.E254Q 0.35 tolerated(0.13) possibly_damaging(0.561) TCGA-HD-8635-01 3 138433375 138433375 T C PIK3CB Missense_Mutation p.T413A 0.17 tolerated(0.19) benign(0.012) TCGA-HD-8635-01 3 160245808 160245808 C G KPNA4 Silent p.L163L 0.23 TCGA-HD-8635-01 3 183903987 183903987 G A ABCF3 5'UTR 0.19 TCGA-HD-8635-01 3 183963045 183963045 G A ALG3 Silent p.L182L 0.10 TCGA-HD-8635-01 3 186980391 186980391 G A MASP1 Missense_Mutation p.R119W 0.18 deleterious(0) probably_damaging(0.933) TCGA-HD-8635-01 3 49060616 49060616 A T NDUFAF3 3'UTR 0.38 TCGA-HD-8635-01 3 49736230 49736230 G C RNF123 Missense_Mutation p.D205H 0.17 deleterious(0) probably_damaging(0.946) TCGA-HD-8635-01 3 9712819 9712819 G A MTMR14 Silent p.L214L 0.27 TCGA-HD-8635-01 4 101947115 101947115 G A PPP3CA Silent p.P491P 0.20 TCGA-HD-8635-01 4 114274830 114274830 G A ANK2 Missense_Mutation p.E1686K 0.12 benign(0.005) TCGA-HD-8635-01 4 129770191 129770191 C T JADE1 Missense_Mutation p.S118L 0.29 tolerated(0.18) benign(0.261) TCGA-HD-8635-01 4 138451204 138451204 G A PCDH18 Missense_Mutation p.A680V 0.21 tolerated(1) benign(0) TCGA-HD-8635-01 4 138451205 138451205 C T PCDH18 Missense_Mutation p.A680T 0.21 tolerated(0.37) benign(0.001) TCGA-HD-8635-01 4 140393939 140393939 A G RAB33B Missense_Mutation p.T117A 0.32 deleterious(0.01) probably_damaging(0.96) TCGA-HD-8635-01 4 147824762 147824762 T C TTC29 Missense_Mutation p.K174E 0.36 tolerated(0.05) benign(0.086) TCGA-HD-8635-01 4 17598725 17598725 G A LAP3 Missense_Mutation p.V349I 0.09 tolerated(0.06) probably_damaging(0.999) TCGA-HD-8635-01 4 22389445 22389445 G C GPR125 Silent p.L1283L 0.13 TCGA-HD-8635-01 4 25390488 25390488 C G ANAPC4 Missense_Mutation p.L167V 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-HD-8635-01 4 48037979 48037979 G C NIPAL1 Silent p.L341L 0.26 TCGA-HD-8635-01 4 493239 493239 G C PIGG Missense_Mutation p.E39Q 0.28 tolerated(0.32) benign(0.197) TCGA-HD-8635-01 4 56762881 56762881 A C EXOC1 Splice_Site p.X652_splice 0.33 TCGA-HD-8635-01 4 72102335 72102335 C G SLC4A4 Silent p.L14L 0.14 TCGA-HD-8635-01 4 75675857 75675857 C G BTC Missense_Mutation p.Q118H 0.30 tolerated(0.06) benign(0.066) TCGA-HD-8635-01 4 82058607 82058607 T A PRKG2 Missense_Mutation p.Y525F 0.23 tolerated(0.1) possibly_damaging(0.469) TCGA-HD-8635-01 4 83905831 83905831 G C LIN54 Missense_Mutation p.S56C 0.17 tolerated_low_confidence(0.07) benign(0.002) TCGA-HD-8635-01 5 126754881 126754881 A G MEGF10 Missense_Mutation p.K459E 0.25 tolerated(0.38) benign(0.146) TCGA-HD-8635-01 5 140167367 140167367 C T PCDHA1 Missense_Mutation p.R498W 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.496) TCGA-HD-8635-01 5 140209569 140209569 C A PCDHA6 Silent p.I631I 0.14 TCGA-HD-8635-01 5 140751494 140751494 C T PCDHGB3 Silent p.S511S 0.17 TCGA-HD-8635-01 5 142513633 142513633 C G ARHGAP26 Silent p.P600P 0.22 TCGA-HD-8635-01 5 1463913 1463913 G A LPCAT1 Silent p.F486F 0.16 TCGA-HD-8635-01 5 147040883 147040883 C A JAKMIP2 Silent p.L85L 0.23 TCGA-HD-8635-01 5 147553847 147553847 C G SPINK14 Silent p.V54V 0.47 TCGA-HD-8635-01 5 153382442 153382442 C G FAM114A2 Missense_Mutation p.E361Q 0.19 tolerated(0.18) benign(0.022) TCGA-HD-8635-01 5 160067536 160067536 C T ATP10B Missense_Mutation p.R311Q 0.22 deleterious(0.03) possibly_damaging(0.474) TCGA-HD-8635-01 5 167642273 167642273 G A TENM2 Silent p.P1358P 0.25 TCGA-HD-8635-01 5 176018456 176018456 C A CDHR2 Silent p.L1235L 0.23 TCGA-HD-8635-01 5 43628388 43628389 - T NNT Frame_Shift_Ins p.A289Cfs*10 0.31 TCGA-HD-8635-01 5 64824348 64824348 G C CENPK Silent p.L176L 0.24 TCGA-HD-8635-01 5 7861342 7861342 A G FASTKD3 Missense_Mutation p.C602R 0.17 deleterious(0) probably_damaging(0.973) TCGA-HD-8635-01 6 100838251 100838251 T C SIM1 Missense_Mutation p.T763A 0.23 tolerated_low_confidence(0.27) benign(0.06) TCGA-HD-8635-01 6 127610991 127610992 - G ECHDC1 3'UTR 0.22 TCGA-HD-8635-01 6 127797497 127797497 C G SOGA3 Missense_Mutation p.Q558H 0.17 deleterious(0) probably_damaging(0.997) TCGA-HD-8635-01 6 132645203 132645203 T A MOXD1 Missense_Mutation p.Y327F 0.21 deleterious(0.01) possibly_damaging(0.533) TCGA-HD-8635-01 6 146276246 146276246 C T SHPRH Silent p.K71K 0.10 TCGA-HD-8635-01 6 154360714 154360714 A G OPRM1 Missense_Mutation p.N105S 0.18 deleterious_low_confidence(0.01) benign(0.281) TCGA-HD-8635-01 6 160464244 160464244 C A IGF2R Missense_Mutation p.F515L 0.25 tolerated(0.08) probably_damaging(0.955) TCGA-HD-8635-01 6 160525931 160525931 A T IGF2R Missense_Mutation p.S2431C 0.21 deleterious(0) possibly_damaging(0.711) TCGA-HD-8635-01 6 161455314 161455314 C T MAP3K4 Missense_Mutation p.S59L 0.24 tolerated_low_confidence(0.14) benign(0.01) TCGA-HD-8635-01 6 168475980 168475980 C T FRMD1 Silent p.V83V 0.12 TCGA-HD-8635-01 6 170143280 170143280 C T TCTE3 Missense_Mutation p.E128K 0.15 tolerated(0.3) possibly_damaging(0.492) TCGA-HD-8635-01 6 26217509 26217509 A T HIST1H2AE Missense_Mutation p.I103F 0.21 deleterious_low_confidence(0.01) benign(0.379) TCGA-HD-8635-01 6 27222600 27222600 T A PRSS16 Missense_Mutation p.S427T 0.20 tolerated(0.16) benign(0.01) TCGA-HD-8635-01 6 32134035 32134035 C T EGFL8 Silent p.L31L 0.16 TCGA-HD-8635-01 6 32148967 32148967 G A AGER Nonsense_Mutation p.Q390* 0.23 TCGA-HD-8635-01 6 35280093 35280093 G A DEF6 Silent p.L146L 0.31 TCGA-HD-8635-01 6 35544861 35544861 G C FKBP5 Silent p.S392S 0.27 TCGA-HD-8635-01 6 52109269 52109269 G C IL17F 5'UTR 0.21 TCGA-HD-8635-01 6 55739531 55739531 T G BMP5 Missense_Mutation p.N45H 0.24 deleterious(0.01) probably_damaging(0.91) TCGA-HD-8635-01 6 74228666 74228666 G C EEF1A1 Missense_Mutation p.P204A 0.24 tolerated_low_confidence(0.22) benign(0.074) TCGA-HD-8635-01 6 79912025 79912025 G A HMGN3 Missense_Mutation p.P77S 0.15 deleterious(0.01) probably_damaging(0.96) TCGA-HD-8635-01 6 80634736 80634736 G A ELOVL4 Missense_Mutation p.S101L 0.18 deleterious(0) possibly_damaging(0.507) TCGA-HD-8635-01 7 100482979 100482979 C T SRRT Silent p.A435A 0.22 TCGA-HD-8635-01 7 107350640 107350640 A G SLC26A4 Missense_Mutation p.E744G 0.19 deleterious(0.01) benign(0.424) TCGA-HD-8635-01 7 107603497 107603498 - A LAMB1 Frame_Shift_Ins p.V571Sfs*23 0.22 TCGA-HD-8635-01 7 107692621 107692621 C G LAMB4 Missense_Mutation p.K1279N 0.21 tolerated(0.52) benign(0.005) TCGA-HD-8635-01 7 107707040 107707040 G C LAMB4 Missense_Mutation p.H818D 0.16 tolerated(0.5) benign(0.007) TCGA-HD-8635-01 7 119915214 119915214 G C KCND2 Missense_Mutation p.E176D 0.30 tolerated(0.08) possibly_damaging(0.849) TCGA-HD-8635-01 7 121612621 121612621 C A PTPRZ1 Missense_Mutation p.R111S 0.27 deleterious(0.05) benign(0.076) TCGA-HD-8635-01 7 123508372 123508372 A T HYAL4 Missense_Mutation p.Q15H 0.21 tolerated_low_confidence(0.14) benign(0.017) TCGA-HD-8635-01 7 123594531 123594531 T A SPAM1 Missense_Mutation p.Y303N 0.23 deleterious(0) probably_damaging(1) TCGA-HD-8635-01 7 141736626 141736626 C A MGAM Missense_Mutation p.Q694K 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-HD-8635-01 7 149558224 149558224 C G ZNF862 Missense_Mutation p.L659V 0.10 tolerated(0.2) probably_damaging(0.993) TCGA-HD-8635-01 7 155538268 155538268 A T RBM33 Missense_Mutation p.K984M 0.25 deleterious(0) unknown(0) TCGA-HD-8635-01 7 158472660 158472660 C T NCAPG2 Missense_Mutation p.E380K 0.10 tolerated(0.06) probably_damaging(0.964) TCGA-HD-8635-01 7 17379208 17379208 G C AHR Missense_Mutation p.D587H 0.20 deleterious(0.01) benign(0.153) TCGA-HD-8635-01 7 26404253 26404253 G C SNX10 Silent p.L70L 0.12 TCGA-HD-8635-01 7 36895204 36895204 C T ELMO1 Silent p.P712P 0.15 TCGA-HD-8635-01 7 73275545 73275545 C G WBSCR28 Silent p.V7V 0.23 TCGA-HD-8635-01 7 96318232 96318232 G C SHFM1 3'UTR 0.15 TCGA-HD-8635-01 7 99699579 99699579 C A AP4M1 Silent p.S45S 0.21 TCGA-HD-8635-01 7 99912207 99912207 G T SPDYE3 Missense_Mutation p.K345N 0.31 deleterious(0.03) probably_damaging(0.979) TCGA-HD-8635-01 8 104831644 104831644 G T RIMS2 Intron 0.63 TCGA-HD-8635-01 8 116632226 116632226 G C TRPS1 Missense_Mutation p.I33M 0.30 deleterious_low_confidence(0.01) benign(0.341) TCGA-HD-8635-01 8 131916134 131916134 C T ADCY8 Missense_Mutation p.E599K 0.11 tolerated(0.48) benign(0.046) TCGA-HD-8635-01 8 139601678 139601678 G C COL22A1 Missense_Mutation p.P1567A 0.16 unknown(0) TCGA-HD-8635-01 8 141263009 141263009 G A TRAPPC9 Silent p.F864F 0.11 TCGA-HD-8635-01 8 144398195 144398195 T C TOP1MT Missense_Mutation p.K478E 0.11 tolerated(0.12) benign(0.024) TCGA-HD-8635-01 8 145152333 145152333 C T CYC1 3'UTR 0.24 TCGA-HD-8635-01 8 145557311 145557311 C T SCRT1 Missense_Mutation p.E195K 0.19 deleterious(0.02) unknown(0) TCGA-HD-8635-01 8 48798592 48798592 G C PRKDC Missense_Mutation p.F1562L 0.09 probably_damaging(0.997) TCGA-HD-8635-01 8 71082580 71082580 T A NCOA2 Missense_Mutation p.E133V 0.60 deleterious(0) probably_damaging(0.976) TCGA-HD-8635-01 8 73850106 73850106 G A KCNB2 Missense_Mutation p.S839N 0.38 tolerated_low_confidence(0.35) benign(0.002) TCGA-HD-8635-01 9 115806327 115806327 G C ZFP37 Missense_Mutation p.P191A 0.36 tolerated(0.51) benign(0.188) TCGA-HD-8635-01 9 139400146 139400146 C T NOTCH1 Missense_Mutation p.G1401E 0.38 deleterious(0) probably_damaging(0.999) TCGA-HD-8635-01 9 17366690 17366690 T A CNTLN Missense_Mutation p.N654K 0.15 tolerated(0.07) benign(0.056) TCGA-HD-8635-01 9 32542610 32542610 C G TOPORS Missense_Mutation p.R638T 0.23 deleterious_low_confidence(0) unknown(0) TCGA-HD-8635-01 9 37518252 37518252 C T FBXO10 Missense_Mutation p.R795Q 0.26 deleterious(0.03) possibly_damaging(0.892) TCGA-HD-8635-01 X 109919583 109919583 C T CHRDL1 Nonsense_Mutation p.W418* 0.13 TCGA-HD-8635-01 X 117815131 117815131 G C DOCK11 Missense_Mutation p.E1928Q 0.31 deleterious(0) possibly_damaging(0.85) TCGA-HD-8635-01 X 118921391 118921391 C T RPL39 Intron 0.22 TCGA-HD-8635-01 X 122387299 122387299 C A GRIA3 Silent p.V138V 0.14 TCGA-HD-8635-01 X 139038258 139038258 G T CXorf66 Missense_Mutation p.Q295K 0.36 tolerated(0.29) possibly_damaging(0.486) TCGA-HD-8635-01 X 142716543 142716543 C T SLITRK4 Silent p.L794L 0.14 TCGA-HD-8635-01 X 148048585 148048585 G T AFF2 Missense_Mutation p.R1060I 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-HD-8635-01 X 3002435 3002435 G C ARSF Missense_Mutation p.E186D 0.15 tolerated(0.09) benign(0.405) TCGA-HD-8635-01 X 57020862 57020863 - T SPIN3 Nonsense_Mutation p.Y173* 0.27 TCGA-HD-8635-01 X 63410548 63410548 C G AMER1 Missense_Mutation p.L873F 0.09 tolerated(0.09) probably_damaging(0.981) TCGA-HD-8635-01 X 83129133 83129133 A C CYLC1 Missense_Mutation p.K473Q 0.20 tolerated(0.11) benign(0.322) TCGA-HD-A4C1-01 10 105799274 105799274 G C COL17A1 Missense_Mutation p.S942C 0.31 probably_damaging(0.949) TCGA-HD-A4C1-01 10 126311885 126311885 C T FAM53B Missense_Mutation p.D399N 0.30 tolerated(0.27) benign(0.333) TCGA-HD-A4C1-01 10 127422700 127422700 G C EDRF1 Missense_Mutation p.R482T 0.14 deleterious(0) probably_damaging(0.961) TCGA-HD-A4C1-01 10 32321667 32321667 C T KIF5B Silent p.E447E 0.22 TCGA-HD-A4C1-01 10 38652509 38652509 G C HSD17B7P2 RNA 0.20 TCGA-HD-A4C1-01 10 55892742 55892742 C T PCDH15 Missense_Mutation p.E604K 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-HD-A4C1-01 10 68857396 68857396 A G LRRTM3 Missense_Mutation p.I530V 0.36 tolerated_low_confidence(0.68) benign(0.001) TCGA-HD-A4C1-01 11 108198394 108198394 C T ATM Missense_Mutation p.T2333I 0.33 tolerated(1) benign(0.001) TCGA-HD-A4C1-01 11 115088674 115088674 T C CADM1 Silent p.L253L 0.28 TCGA-HD-A4C1-01 11 119020798 119020798 G A ABCG4 Silent p.E41E 0.26 TCGA-HD-A4C1-01 11 122774693 122774693 G C C11orf63 Missense_Mutation p.K135N 0.28 tolerated(0.23) benign(0.212) TCGA-HD-A4C1-01 11 125300029 125300029 A T PKNOX2 Missense_Mutation p.N395I 0.29 tolerated_low_confidence(0.06) benign(0.024) TCGA-HD-A4C1-01 11 534288 534288 C T HRAS Missense_Mutation p.G12D 0.41 deleterious(0) possibly_damaging(0.56) TCGA-HD-A4C1-01 11 5344569 5344569 C T OR51B2 3'UTR 0.62 TCGA-HD-A4C1-01 11 57564299 57564299 G A CTNND1 Missense_Mutation p.R264Q 0.25 tolerated(0.61) possibly_damaging(0.775) TCGA-HD-A4C1-01 11 6023761 6023761 C T OR56A4 Silent p.R206R 0.56 TCGA-HD-A4C1-01 11 60703846 60703846 G C TMEM132A Missense_Mutation p.E848Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-HD-A4C1-01 11 62291338 62291338 G A AHNAK Silent p.L3517L 0.22 TCGA-HD-A4C1-01 11 65660543 65660543 A - FOSL1 Frame_Shift_Del p.E211Nfs*11 0.19 TCGA-HD-A4C1-01 11 66466933 66466933 A T SPTBN2 Silent p.S1240S 0.30 TCGA-HD-A4C1-01 11 691516 691516 G C DEAF1 Missense_Mutation p.I124M 0.47 tolerated(0.13) benign(0.1) TCGA-HD-A4C1-01 11 840380 840380 C G POLR2L Missense_Mutation p.E66Q 0.53 deleterious(0.04) benign(0.065) TCGA-HD-A4C1-01 11 85395959 85395959 A G CCDC89 3'UTR 0.20 TCGA-HD-A4C1-01 12 104098378 104098378 G A STAB2 Missense_Mutation p.G1296R 0.17 deleterious(0.02) probably_damaging(0.952) TCGA-HD-A4C1-01 12 123380553 123380553 G A VPS37B Silent p.N19N 0.26 TCGA-HD-A4C1-01 12 13764668 13764668 C A GRIN2B Missense_Mutation p.D591Y 0.38 deleterious(0.02) possibly_damaging(0.694) TCGA-HD-A4C1-01 12 19436279 19436279 A G PLEKHA5 Missense_Mutation p.Y460C 0.32 deleterious(0.05) benign(0.021) TCGA-HD-A4C1-01 12 21015749 21015749 T C SLCO1B3 Missense_Mutation p.F230L 0.20 tolerated(0.68) benign(0.05) TCGA-HD-A4C1-01 12 40441950 40441950 G A SLC2A13 Nonsense_Mutation p.R207* 0.24 TCGA-HD-A4C1-01 12 53895898 53895898 C G TARBP2 Silent p.L51L 0.26 TCGA-HD-A4C1-01 12 56525335 56525335 C T ESYT1 Silent p.F263F 0.32 TCGA-HD-A4C1-01 12 56716227 56716227 G A PAN2 Missense_Mutation p.L897F 0.23 tolerated(0.15) probably_damaging(0.989) TCGA-HD-A4C1-01 12 56716463 56716463 G A PAN2 Missense_Mutation p.S862L 0.38 tolerated(0.18) benign(0.186) TCGA-HD-A4C1-01 12 56716916 56716917 GA - PAN2 Frame_Shift_Del p.S812Hfs*18 0.21 TCGA-HD-A4C1-01 12 56716930 56716930 G A PAN2 Silent p.V807V 0.20 TCGA-HD-A4C1-01 12 8672930 8672930 C T CLEC4D Missense_Mutation p.R165C 0.22 deleterious(0.01) possibly_damaging(0.862) TCGA-HD-A4C1-01 12 90003779 90003779 C T ATP2B1 Missense_Mutation p.A793T 0.29 deleterious(0) possibly_damaging(0.665) TCGA-HD-A4C1-01 13 20024301 20024301 C T TPTE2 Silent p.E296E 0.19 TCGA-HD-A4C1-01 13 37401782 37401782 G A RFXAP Silent p.S237S 0.15 TCGA-HD-A4C1-01 13 41766240 41766240 C T KBTBD7 3'UTR 0.33 TCGA-HD-A4C1-01 13 53421549 53421549 G A PCDH8 Silent p.I341I 0.24 TCGA-HD-A4C1-01 13 78320940 78320940 A T SLAIN1 Missense_Mutation p.Y239F 0.24 tolerated(0.58) unknown(0) TCGA-HD-A4C1-01 14 24569206 24569206 C T PCK2 Nonsense_Mutation p.R340* 0.24 TCGA-HD-A4C1-01 14 55819051 55819051 G A FBXO34 Missense_Mutation p.R648Q 0.19 deleterious(0.02) benign(0.203) TCGA-HD-A4C1-01 14 71511998 71511998 G A PCNX Missense_Mutation p.R1339Q 0.22 deleterious(0.01) benign(0.02) TCGA-HD-A4C1-01 14 74759535 74759535 C G ABCD4 Silent p.L284L 0.21 TCGA-HD-A4C1-01 14 77715711 77715711 G C TMEM63C Missense_Mutation p.E650Q 0.22 tolerated(0.31) benign(0.092) TCGA-HD-A4C1-01 15 23316007 23316007 T C HERC2P2 RNA 0.27 TCGA-HD-A4C1-01 15 25947159 25947159 G A ATP10A Silent p.L888L 0.30 TCGA-HD-A4C1-01 15 34077962 34077962 G A RYR3 Missense_Mutation p.R3123Q 0.25 possibly_damaging(0.851) TCGA-HD-A4C1-01 15 34648090 34648090 C A NUTM1 Silent p.G599G 0.27 TCGA-HD-A4C1-01 15 40657052 40657052 G C DISP2 Missense_Mutation p.R206P 0.20 deleterious(0) probably_damaging(1) TCGA-HD-A4C1-01 15 43508638 43508638 C G EPB42 Missense_Mutation p.K38N 0.26 deleterious(0.01) possibly_damaging(0.791) TCGA-HD-A4C1-01 15 45654339 45654339 G A GATM Missense_Mutation p.R414C 0.22 deleterious(0) probably_damaging(1) TCGA-HD-A4C1-01 15 54685245 54685245 G C UNC13C Splice_Site p.X1572_splice 0.19 TCGA-HD-A4C1-01 15 75931969 75931969 C G IMP3 Missense_Mutation p.D181H 0.26 deleterious(0) probably_damaging(0.957) TCGA-HD-A4C1-01 16 10855155 10855155 C T NUBP1 Intron 0.18 TCGA-HD-A4C1-01 16 1144797 1144797 C T C1QTNF8 Silent p.V42V 0.27 TCGA-HD-A4C1-01 16 1261595 1261595 A C CACNA1H Missense_Mutation p.N1489H 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-HD-A4C1-01 16 1828032 1828032 C T SPSB3 Silent p.T170T 0.22 TCGA-HD-A4C1-01 16 27895933 27895933 C T GSG1L Missense_Mutation p.E142K 0.33 deleterious(0) probably_damaging(0.988) TCGA-HD-A4C1-01 16 31008001 31008001 C A STX1B Intron 0.25 TCGA-HD-A4C1-01 16 55519211 55519211 A G MMP2 Missense_Mutation p.E177G 0.21 deleterious(0) probably_damaging(0.994) TCGA-HD-A4C1-01 16 57938671 57938671 C T CNGB1 Silent p.T867T 0.32 TCGA-HD-A4C1-01 16 66956067 66956067 C T RRAD Missense_Mutation p.R280H 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-HD-A4C1-01 16 67702164 67702164 C T C16orf86 Silent p.N205N 0.29 TCGA-HD-A4C1-01 16 77775869 77775869 G A NUDT7 3'UTR 0.25 TCGA-HD-A4C1-01 16 81075963 81075963 G A ATMIN Silent p.L180L 0.30 TCGA-HD-A4C1-01 16 87782281 87782281 G A KLHDC4 Silent p.V168V 0.25 TCGA-HD-A4C1-01 16 89837010 89837010 C T FANCA Silent p.Q728Q 0.26 TCGA-HD-A4C1-01 17 33680499 33680499 C T SLFN11 Missense_Mutation p.R593K 0.15 tolerated(0.23) benign(0.057) TCGA-HD-A4C1-01 17 37563801 37563801 G A MED1 Missense_Mutation p.S1558L 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-HD-A4C1-01 17 40318343 40318343 G C KCNH4 Silent p.L604L 0.42 TCGA-HD-A4C1-01 17 42928542 42928543 CT - EFTUD2 3'UTR 0.32 TCGA-HD-A4C1-01 17 4446340 4446340 G A MYBBP1A Silent p.A920A 0.23 TCGA-HD-A4C1-01 17 47007863 47007863 C G SNF8 Missense_Mutation p.E251Q 0.11 deleterious_low_confidence(0.03) benign(0.295) TCGA-HD-A4C1-01 17 49247332 49247332 G A NME1-NME2 Missense_Mutation p.R203Q 0.31 deleterious(0.01) possibly_damaging(0.908) TCGA-HD-A4C1-01 17 65026898 65026898 C G CACNG4 Silent p.P254P 0.29 TCGA-HD-A4C1-01 17 66039250 66039250 C G KPNA2 Missense_Mutation p.S234C 0.29 deleterious(0) probably_damaging(0.97) TCGA-HD-A4C1-01 17 73627315 73627315 G A RECQL5 Missense_Mutation p.S488F 0.20 deleterious(0.02) possibly_damaging(0.612) TCGA-HD-A4C1-01 17 74035886 74035886 G A SRP68 Silent p.L595L 0.27 TCGA-HD-A4C1-01 17 74035918 74035918 G A SRP68 Missense_Mutation p.P585S 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-HD-A4C1-01 17 74921163 74921163 T G MGAT5B Missense_Mutation p.S392A 0.22 tolerated(0.2) possibly_damaging(0.714) TCGA-HD-A4C1-01 17 7707590 7707590 C T DNAH2 Missense_Mutation p.R2997W 0.31 possibly_damaging(0.656) TCGA-HD-A4C1-01 17 7838386 7838386 C T CNTROB Missense_Mutation p.R173W 0.15 deleterious(0.01) benign(0.05) TCGA-HD-A4C1-01 17 80772798 80772798 C T TBCD Nonsense_Mutation p.R436* 0.17 TCGA-HD-A4C1-01 17 8249210 8249210 C T ODF4 3'UTR 0.33 TCGA-HD-A4C1-01 17 9792818 9792818 C T GLP2R Silent p.G486G 0.19 TCGA-HD-A4C1-01 18 47369730 47369730 G A MYO5B Missense_Mutation p.P1498S 0.23 deleterious(0) probably_damaging(0.999) TCGA-HD-A4C1-01 18 56196374 56196374 G C ALPK2 Missense_Mutation p.S1817C 0.28 deleterious(0) probably_damaging(1) TCGA-HD-A4C1-01 18 77659747 77659747 G A KCNG2 Silent p.S444S 0.24 TCGA-HD-A4C1-01 19 14150433 14150433 G A IL27RA Missense_Mutation p.G111D 0.50 tolerated(0.12) benign(0.037) TCGA-HD-A4C1-01 19 15839060 15839060 C T OR10H2 Silent p.S69S 0.42 TCGA-HD-A4C1-01 19 17256215 17256215 A T MYO9B Silent p.G283G 0.21 TCGA-HD-A4C1-01 19 22362838 22362838 A T ZNF676 Missense_Mutation p.Y561N 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-HD-A4C1-01 19 38976759 38976759 G A RYR1 Missense_Mutation p.G1822S 0.25 probably_damaging(0.937) TCGA-HD-A4C1-01 19 40900809 40900809 G A PRX Silent p.I1150I 0.05 TCGA-HD-A4C1-01 19 42406036 42406036 G C ARHGEF1 Splice_Site p.X438_splice 0.21 TCGA-HD-A4C1-01 19 42408250 42408250 G T ARHGEF1 Missense_Mutation p.D676Y 0.16 deleterious(0) probably_damaging(0.982) TCGA-HD-A4C1-01 19 4548120 4548120 G A SEMA6B Missense_Mutation p.S507L 0.55 tolerated(0.18) possibly_damaging(0.614) TCGA-HD-A4C1-01 19 50165479 50165479 C T IRF3 Silent p.R236R 0.23 TCGA-HD-A4C1-01 19 50165569 50165569 C T IRF3 Silent p.V206V 0.16 TCGA-HD-A4C1-01 19 50165707 50165707 C T IRF3 Silent p.L192L 0.21 TCGA-HD-A4C1-01 19 52941988 52941988 C T ZNF534 Silent p.L438L 0.19 TCGA-HD-A4C1-01 19 56423256 56423256 G T NLRP13 Missense_Mutation p.H643N 0.23 deleterious(0.04) benign(0.081) TCGA-HD-A4C1-01 19 56896328 56896328 T C ZNF582 Missense_Mutation p.D153G 0.29 tolerated(0.3) benign(0) TCGA-HD-A4C1-01 19 58846419 58846419 C T ZSCAN22 Missense_Mutation p.S84F 0.34 deleterious(0) probably_damaging(0.998) TCGA-HD-A4C1-01 19 6217980 6217980 G C MLLT1 Missense_Mutation p.Q395E 0.49 tolerated(0.07) benign(0.042) TCGA-HD-A4C1-01 19 623567 623567 A G POLRMT Silent p.L393L 0.06 TCGA-HD-A4C1-01 19 6755042 6755042 C T SH2D3A Missense_Mutation p.E261K 0.59 tolerated(0.17) benign(0.058) TCGA-HD-A4C1-01 19 8563897 8563897 G A PRAM1 Silent p.D265D 0.48 TCGA-HD-A4C1-01 1 104160080 104160080 G A AMY2A Silent p.L6L 0.23 TCGA-HD-A4C1-01 1 116944207 116944207 G C ATP1A1 Missense_Mutation p.E961Q 0.27 tolerated(0.28) probably_damaging(0.924) TCGA-HD-A4C1-01 1 146398477 146398477 G A NBPF12 Missense_Mutation p.A155T 0.13 possibly_damaging(0.691) TCGA-HD-A4C1-01 1 151315599 151315599 C T RFX5 Missense_Mutation p.R305Q 0.30 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-HD-A4C1-01 1 169526007 169526007 C G F5 Missense_Mutation p.E277Q 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-HD-A4C1-01 1 183507529 183507529 G C SMG7 Missense_Mutation p.E417Q 0.28 deleterious(0) probably_damaging(1) TCGA-HD-A4C1-01 1 200376778 200376778 G A ZNF281 Missense_Mutation p.L686F 0.27 tolerated(0.47) benign(0.007) TCGA-HD-A4C1-01 1 200959461 200959461 C T KIF21B Splice_Site p.X946_splice 0.20 TCGA-HD-A4C1-01 1 214819007 214819007 C T CENPF Missense_Mutation p.H2032Y 0.06 possibly_damaging(0.638) TCGA-HD-A4C1-01 1 22181343 22181343 G C HSPG2 Nonsense_Mutation p.S2044* 0.14 TCGA-HD-A4C1-01 1 226413313 226413313 G A MIXL1 Missense_Mutation p.E167K 0.35 deleterious(0.03) benign(0.197) TCGA-HD-A4C1-01 1 23644993 23644993 G C HNRNPR Missense_Mutation p.P337A 0.24 tolerated(0.25) possibly_damaging(0.561) TCGA-HD-A4C1-01 1 39800393 39800393 A G MACF1 Intron 0.33 TCGA-HD-A4C1-01 1 40767522 40767522 C T COL9A2 Missense_Mutation p.R611Q 0.27 deleterious(0.03) probably_damaging(0.934) TCGA-HD-A4C1-01 1 40945119 40945119 C T ZFP69 Missense_Mutation p.A29V 0.23 tolerated_low_confidence(0.29) benign(0.002) TCGA-HD-A4C1-01 1 70503966 70503966 A C LRRC7 Missense_Mutation p.E782A 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-HD-A4C1-01 1 8385896 8385896 C T SLC45A1 Missense_Mutation p.S170L 0.40 tolerated(0.06) possibly_damaging(0.625) TCGA-HD-A4C1-01 1 84668368 84668368 C A PRKACB Silent p.G262G 0.20 TCGA-HD-A4C1-01 1 89448636 89448636 G A RBMXL1 Missense_Mutation p.R292C 0.30 tolerated(0.16) benign(0.028) TCGA-HD-A4C1-01 1 89727993 89727993 C T GBP5 Silent p.E519E 0.29 TCGA-HD-A4C1-01 1 89728465 89728465 C T GBP5 Missense_Mutation p.E456K 0.33 tolerated(0.2) possibly_damaging(0.468) TCGA-HD-A4C1-01 20 32379270 32379270 G A ZNF341 Missense_Mutation p.E831K 0.38 tolerated_low_confidence(0.06) benign(0.003) TCGA-HD-A4C1-01 20 3726235 3726235 C T HSPA12B Silent p.H183H 0.31 TCGA-HD-A4C1-01 20 39830935 39830935 C T ZHX3 Missense_Mutation p.M874I 0.27 deleterious(0.02) benign(0.314) TCGA-HD-A4C1-01 20 39831673 39831673 C T ZHX3 Silent p.E628E 0.32 TCGA-HD-A4C1-01 20 47592669 47592669 C T ARFGEF2 Nonsense_Mutation p.Q631* 0.27 TCGA-HD-A4C1-01 20 48760046 48760046 G C TMEM189-UBE2V1 Silent p.L78L 0.46 TCGA-HD-A4C1-01 21 34617295 34617295 G A IFNAR2 Missense_Mutation p.R46Q 0.21 tolerated(0.28) probably_damaging(0.978) TCGA-HD-A4C1-01 21 34932274 34932274 G A SON Intron 0.24 TCGA-HD-A4C1-01 22 19839757 19839757 C A C22orf29 Missense_Mutation p.G10C 0.37 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-HD-A4C1-01 22 29682945 29682945 G A EWSR1 Silent p.Q211Q 0.30 TCGA-HD-A4C1-01 22 30138423 30138423 C T ZMAT5 Silent p.R58R 0.24 TCGA-HD-A4C1-01 22 31859741 31859741 G A EIF4ENIF1 Missense_Mutation p.R171C 0.31 deleterious(0) probably_damaging(0.998) TCGA-HD-A4C1-01 22 38119735 38119735 C T TRIOBP Missense_Mutation p.S391F 0.22 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-HD-A4C1-01 22 44386275 44386275 G A SAMM50 Silent p.Q451Q 0.23 TCGA-HD-A4C1-01 22 47063993 47063993 G A GRAMD4 Missense_Mutation p.E287K 0.33 tolerated(0.06) possibly_damaging(0.463) TCGA-HD-A4C1-01 2 11780570 11780570 G A GREB1 Missense_Mutation p.R1947Q 0.23 deleterious(0.04) benign(0.05) TCGA-HD-A4C1-01 2 120620221 120620221 T G PTPN4 Splice_Site p.X82_splice 0.29 TCGA-HD-A4C1-01 2 166897882 166897882 T C SCN1A Silent p.K758K 0.36 TCGA-HD-A4C1-01 2 197565898 197565898 A G CCDC150 Silent p.K563K 0.30 TCGA-HD-A4C1-01 2 202137501 202137501 T C CASP8 Splice_Site p.X243_splice 0.36 TCGA-HD-A4C1-01 2 202149973 202149973 C T CASP8 Nonsense_Mutation p.R472* 0.26 TCGA-HD-A4C1-01 2 212286729 212286729 C T ERBB4 Intron 0.21 TCGA-HD-A4C1-01 2 215646136 215646136 G A BARD1 Silent p.V154V 0.21 TCGA-HD-A4C1-01 2 227661962 227661962 G A IRS1 Missense_Mutation p.T498I 0.14 tolerated(0.18) benign(0.03) TCGA-HD-A4C1-01 2 46987083 46987083 C T SOCS5 Missense_Mutation p.L472F 0.27 deleterious(0) probably_damaging(0.995) TCGA-HD-A4C1-01 2 61436093 61436093 C G USP34 Missense_Mutation p.E2954Q 0.12 deleterious(0.03) possibly_damaging(0.712) TCGA-HD-A4C1-01 2 70408755 70408755 C G C2orf42 Silent p.L121L 0.37 TCGA-HD-A4C1-01 2 74600063 74600063 G C DCTN1 Missense_Mutation p.R149G 0.22 tolerated(0.44) benign(0.03) TCGA-HD-A4C1-01 2 80801407 80801407 C T CTNNA2 Missense_Mutation p.R621W 0.24 deleterious(0.05) possibly_damaging(0.657) TCGA-HD-A4C1-01 2 86832363 86832363 C G RNF103 Missense_Mutation p.E221Q 0.24 tolerated(0.36) benign(0.004) TCGA-HD-A4C1-01 2 96781855 96781855 T A ADRA2B Missense_Mutation p.T12S 0.29 tolerated(0.3) probably_damaging(0.973) TCGA-HD-A4C1-01 3 10146360 10146360 G C FANCD2OS Missense_Mutation p.F33L 0.16 tolerated(0.69) benign(0.002) TCGA-HD-A4C1-01 3 112301560 112301560 G A SLC35A5 Missense_Mutation p.E418K 0.35 deleterious(0.01) benign(0.209) TCGA-HD-A4C1-01 3 184100717 184100717 C G CHRD Silent p.V352V 0.17 TCGA-HD-A4C1-01 3 192516539 192516539 T C MB21D2 Missense_Mutation p.N371S 0.22 tolerated(0.78) benign(0.008) TCGA-HD-A4C1-01 3 193023355 193023355 G A ATP13A5 Missense_Mutation p.L891F 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-HD-A4C1-01 3 3137058 3137058 T A IL5RA Missense_Mutation p.K260N 0.24 deleterious(0.03) possibly_damaging(0.814) TCGA-HD-A4C1-01 3 53837489 53837489 G T CACNA1D Silent p.R1845R 0.22 TCGA-HD-A4C1-01 3 64633621 64633621 C T ADAMTS9 Missense_Mutation p.G569R 0.37 tolerated(0.06) benign(0.12) TCGA-HD-A4C1-01 3 89156886 89156886 C G EPHA3 5'UTR 0.22 TCGA-HD-A4C1-01 4 125590567 125590567 T A ANKRD50 Missense_Mutation p.S1289C 0.31 tolerated_low_confidence(0.07) benign(0.002) TCGA-HD-A4C1-01 4 125599995 125599995 G A ANKRD50 Missense_Mutation p.S193F 0.20 deleterious(0) probably_damaging(0.944) TCGA-HD-A4C1-01 4 169145398 169145398 T C DDX60 Missense_Mutation p.N1607S 0.23 tolerated(0.15) benign(0.019) TCGA-HD-A4C1-01 4 170641211 170641211 C T CLCN3 Missense_Mutation p.L866F 0.12 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-HD-A4C1-01 4 170641228 170641228 C T CLCN3 3'UTR 0.20 TCGA-HD-A4C1-01 4 186379847 186379847 G C CCDC110 Missense_Mutation p.Q632E 0.22 deleterious(0.03) possibly_damaging(0.615) TCGA-HD-A4C1-01 4 186382220 186382220 G A CCDC110 Missense_Mutation p.R111C 0.26 tolerated(0.09) benign(0.002) TCGA-HD-A4C1-01 4 187549458 187549459 CG - FAT1 Frame_Shift_Del p.S1553Rfs*4 0.17 TCGA-HD-A4C1-01 4 187560919 187560919 G C FAT1 Nonsense_Mutation p.S1200* 0.22 TCGA-HD-A4C1-01 4 6302808 6302808 G T WFS1 Missense_Mutation p.C429F 0.30 deleterious(0) possibly_damaging(0.65) TCGA-HD-A4C1-01 4 71063017 71063017 A T ODAM Missense_Mutation p.Q40H 0.14 deleterious(0.03) benign(0.066) TCGA-HD-A4C1-01 4 91230515 91230515 G A CCSER1 Silent p.V360V 0.29 TCGA-HD-A4C1-01 5 140081702 140081702 C G ZMAT2 Missense_Mutation p.S75C 0.30 deleterious(0.01) benign(0.027) TCGA-HD-A4C1-01 5 140202489 140202489 G T PCDHA5 Missense_Mutation p.D377Y 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-HD-A4C1-01 5 140237320 140237320 G A PCDHA10 Missense_Mutation p.A563T 0.28 tolerated_low_confidence(0.24) benign(0.005) TCGA-HD-A4C1-01 5 140256212 140256212 C G PCDHA12 Silent p.V385V 0.30 TCGA-HD-A4C1-01 5 171295716 171295716 C T FBXW11 Missense_Mutation p.D518N 0.27 tolerated(0.1) possibly_damaging(0.512) TCGA-HD-A4C1-01 5 38370546 38370546 G T EGFLAM Missense_Mutation p.D232Y 0.26 tolerated_low_confidence(0.05) benign(0.003) TCGA-HD-A4C1-01 5 74892767 74892767 C T POLK Missense_Mutation p.S750L 0.25 tolerated(0.07) benign(0.008) TCGA-HD-A4C1-01 6 109766397 109766397 C G MICAL1 Intron 0.16 TCGA-HD-A4C1-01 6 132859895 132859895 C T TAAR9 Missense_Mutation p.S156F 0.23 deleterious(0.01) possibly_damaging(0.72) TCGA-HD-A4C1-01 6 133092078 133092078 C T SLC18B1 Missense_Mutation p.G419R 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-HD-A4C1-01 6 146720268 146720268 C T GRM1 Missense_Mutation p.P698L 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-HD-A4C1-01 6 151669886 151669886 C T AKAP12 Silent p.S120S 0.32 TCGA-HD-A4C1-01 6 154480942 154480942 G T IPCEF1 3'UTR 0.17 TCGA-HD-A4C1-01 6 155054965 155054965 C A SCAF8 5'UTR 0.38 TCGA-HD-A4C1-01 6 17602854 17602854 G A FAM8A1 Missense_Mutation p.R249K 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-HD-A4C1-01 6 26156626 26156626 A T HIST1H1E Missense_Mutation p.E3V 0.56 deleterious(0) possibly_damaging(0.788) TCGA-HD-A4C1-01 6 29910589 29910590 - C HLA-A Frame_Shift_Ins p.R45Pfs*54 0.26 TCGA-HD-A4C1-01 6 29910741 29910741 A C HLA-A Missense_Mutation p.Q94P 0.45 tolerated_low_confidence(0.07) benign(0.319) TCGA-HD-A4C1-01 6 30618826 30618826 A G C6orf136 Missense_Mutation p.E358G 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-HD-A4C1-01 6 30690335 30690335 G A TUBB Missense_Mutation p.E27K 0.34 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-HD-A4C1-01 6 31323241 31323241 G C HLA-B Missense_Mutation p.Q250E 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.793) TCGA-HD-A4C1-01 6 31593823 31593823 G A PRRC2A Missense_Mutation p.R289Q 0.24 unknown(0) TCGA-HD-A4C1-01 6 31833291 31833291 C T SLC44A4 Missense_Mutation p.R557H 0.27 tolerated(0.05) probably_damaging(0.957) TCGA-HD-A4C1-01 6 56362288 56362303 GCCATGGAACCCTTTG - DST Frame_Shift_Del p.G4078Lfs*8 0.16 TCGA-HD-A4C1-01 6 80912822 80912822 C G BCKDHB Missense_Mutation p.H282D 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-HD-A4C1-01 7 103130247 103130247 G A RELN Silent p.C3235C 0.36 TCGA-HD-A4C1-01 7 110763162 110763162 G A LRRN3 Missense_Mutation p.V112I 0.17 tolerated(0.09) benign(0.001) TCGA-HD-A4C1-01 7 123508442 123508442 C T HYAL4 Nonsense_Mutation p.R39* 0.24 TCGA-HD-A4C1-01 7 128478705 128478705 G A FLNC Missense_Mutation p.R420Q 0.31 tolerated(0.2) benign(0.407) TCGA-HD-A4C1-01 7 144060174 144060174 C T ARHGEF5 Missense_Mutation p.P138S 0.17 tolerated(0.38) benign(0.003) TCGA-HD-A4C1-01 7 148802073 148802073 C T ZNF425 Missense_Mutation p.R297H 0.20 tolerated(0.08) possibly_damaging(0.803) TCGA-HD-A4C1-01 7 156451242 156451242 G A RNF32 Missense_Mutation p.R221K 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-HD-A4C1-01 7 157013389 157013389 C G UBE3C Missense_Mutation p.Q641E 0.23 tolerated(0.11) benign(0.05) TCGA-HD-A4C1-01 7 28857752 28857752 A G CREB5 Missense_Mutation p.D440G 0.26 deleterious(0) unknown(0) TCGA-HD-A4C1-01 7 48319203 48319203 T C ABCA13 Silent p.S2804S 0.29 TCGA-HD-A4C1-01 7 7516796 7516796 C G COL28A1 Missense_Mutation p.E394Q 0.13 tolerated(0.72) possibly_damaging(0.502) TCGA-HD-A4C1-01 7 76142444 76142444 G A UPK3B Intron 0.20 TCGA-HD-A4C1-01 7 99700568 99700568 C G AP4M1 Silent p.L112L 0.33 TCGA-HD-A4C1-01 8 12958271 12958271 A T DLC1 Missense_Mutation p.D525E 0.26 tolerated(0.15) benign(0.37) TCGA-HD-A4C1-01 8 130789733 130789733 C T GSDMC Missense_Mutation p.R34H 0.29 tolerated(0.38) benign(0.061) TCGA-HD-A4C1-01 8 30699682 30699682 A G TEX15 Silent p.N2284N 0.29 TCGA-HD-A4C1-01 8 381441 381441 C G FBXO25 Missense_Mutation p.Q79E 0.45 tolerated(0.16) benign(0.138) TCGA-HD-A4C1-01 8 42611822 42611822 G T CHRNA6 Missense_Mutation p.L174I 0.20 deleterious(0.01) possibly_damaging(0.737) TCGA-HD-A4C1-01 8 43054709 43054709 C T HGSNAT Silent p.I635I 0.25 TCGA-HD-A4C1-01 9 131388796 131388796 G A SPTAN1 Missense_Mutation p.E2136K 0.26 tolerated(0.6) benign(0.35) TCGA-HD-A4C1-01 9 134016001 134016001 C T NUP214 Missense_Mutation p.P400S 0.46 unknown(0) TCGA-HD-A4C1-01 9 137622311 137622311 A G COL5A1 Missense_Mutation p.N385S 0.56 benign(0.189) TCGA-HD-A4C1-01 9 19619639 19619639 G C SLC24A2 Missense_Mutation p.L341V 0.25 tolerated(0.54) benign(0.029) TCGA-HD-A4C1-01 9 35958092 35958092 C G OR2S2 Missense_Mutation p.E2Q 0.09 deleterious(0.03) benign(0.01) TCGA-HD-A4C1-01 9 4286392 4286392 G A GLIS3 Missense_Mutation p.R12W 0.32 deleterious_low_confidence(0.05) possibly_damaging(0.707) TCGA-HD-A4C1-01 9 43630701 43630701 T G SPATA31A6 Translation_Start_Site p.M1? 0.27 deleterious(0) possibly_damaging(0.455) TCGA-HD-A4C1-01 9 6592181 6592181 C A GLDC Missense_Mutation p.D482Y 0.26 deleterious(0.04) probably_damaging(0.995) TCGA-HD-A4C1-01 9 6606660 6606660 C T GLDC Silent p.K215K 0.18 TCGA-HD-A4C1-01 9 99489019 99489019 G T RP11-535M15.2 RNA 0.56 TCGA-HD-A4C1-01 X 103411634 103411634 C G FAM199X Silent p.T56T 0.23 TCGA-HD-A4C1-01 X 114239876 114239876 C T IL13RA2 Missense_Mutation p.E334K 0.27 tolerated(0.45) benign(0.022) TCGA-HD-A4C1-01 X 114953312 114953312 C T RP1-241P17.4 Missense_Mutation p.D80N 0.15 tolerated(0.14) benign(0.167) TCGA-HD-A4C1-01 X 11786730 11786730 C T MSL3 Silent p.L404L 0.30 TCGA-HD-A4C1-01 X 123197011 123197011 C T STAG2 Nonsense_Mutation p.Q593* 0.19 TCGA-HD-A4C1-01 X 12903862 12903862 G C TLR7 Missense_Mutation p.D79H 0.03 tolerated(0.97) benign(0.001) TCGA-HD-A4C1-01 X 12939041 12939041 G T TLR8 Missense_Mutation p.D628Y 0.29 deleterious(0) possibly_damaging(0.872) TCGA-HD-A4C1-01 X 135741430 135741430 C T CD40LG Silent p.S214S 0.27 TCGA-HD-A4C1-01 X 151935758 151935758 C A MAGEA3 Missense_Mutation p.G137W 0.26 deleterious(0) probably_damaging(0.919) TCGA-HD-A4C1-01 X 152845573 152845573 C T ATP2B3 Silent p.D1160D 0.31 TCGA-HD-A4C1-01 X 153695621 153695621 G A PLXNA3 Missense_Mutation p.G1083D 0.27 tolerated(0.13) probably_damaging(0.997) TCGA-HD-A4C1-01 X 24483528 24483528 G A PDK3 5'Flank 0.40 TCGA-HD-A4C1-01 X 24546214 24546214 G A PDK3 Missense_Mutation p.V292I 0.19 tolerated(0.4) benign(0.104) TCGA-HD-A4C1-01 X 2825335 2825335 C T ARSD Missense_Mutation p.E587K 0.25 tolerated(1) benign(0.001) TCGA-HD-A4C1-01 X 32662422 32662422 C T DMD Missense_Mutation p.M386I 0.25 benign(0.187) TCGA-HD-A4C1-01 X 54275519 54275519 G C WNK3 Missense_Mutation p.Q1088E 0.32 tolerated(0.05) benign(0.044) TCGA-HD-A4C1-01 X 54472622 54472622 C T FGD1 Missense_Mutation p.E936K 0.30 tolerated(0.1) possibly_damaging(0.636) TCGA-HD-A4C1-01 X 64141759 64141759 G A ZC4H2 Silent p.L55L 0.25 TCGA-HD-A4C1-01 X 76938924 76938924 A T ATRX Silent p.V608V 0.33 TCGA-HD-A4C1-01 X 76939596 76939596 A T ATRX Missense_Mutation p.S384R 0.26 benign(0.063) TCGA-HD-A4C1-01 X 79938022 79938022 G A BRWD3 Missense_Mutation p.R1447W 0.28 deleterious(0) possibly_damaging(0.642) TCGA-HD-A4C1-01 X 8536379 8536379 G A KAL1 Silent p.D367D 0.21 TCGA-HD-A633-01 10 121086086 121086086 T A GRK5 Silent p.P37P 0.32 TCGA-HD-A633-01 10 121411304 121411304 C T BAG3 Silent p.F39F 0.36 TCGA-HD-A633-01 10 129904082 129904082 C G MKI67 Missense_Mutation p.V2008L 0.29 tolerated(0.33) possibly_damaging(0.721) TCGA-HD-A633-01 10 134660573 134660573 C T TTC40 Missense_Mutation p.E2044K 0.46 tolerated(0.07) probably_damaging(0.996) TCGA-HD-A633-01 10 37419270 37419270 G T ANKRD30A Silent p.L102L 0.26 TCGA-HD-A633-01 10 48438681 48438681 C T GDF10 Silent p.P10P 0.41 TCGA-HD-A633-01 10 64573021 64573021 G A EGR2 Silent p.S459S 0.30 TCGA-HD-A633-01 10 73039678 73039678 G A UNC5B Silent p.V60V 0.31 TCGA-HD-A633-01 11 103128364 103128364 G A DYNC2H1 Missense_Mutation p.E3504K 0.22 benign(0.005) TCGA-HD-A633-01 11 120980009 120980009 C T TECTA Silent p.V96V 0.20 TCGA-HD-A633-01 11 124413189 124413189 C T OR8B12 Missense_Mutation p.R121H 0.30 deleterious_low_confidence(0.03) benign(0.12) TCGA-HD-A633-01 11 28090877 28090877 C T KIF18A Missense_Mutation p.E507K 0.23 deleterious(0.02) benign(0.016) TCGA-HD-A633-01 11 55038558 55038558 G T TRIM48 3'UTR 0.19 TCGA-HD-A633-01 11 64368958 64368958 A T SLC22A12 Splice_Site p.X533_splice 0.17 TCGA-HD-A633-01 11 66326839 66326839 C T CTSF 3'Flank 0.32 TCGA-HD-A633-01 11 67069025 67069031 GCATGGA - ANKRD13D Frame_Shift_Del p.M473Afs*31 0.20 TCGA-HD-A633-01 11 7694000 7694000 C A CYB5R2 Silent p.P19P 0.16 TCGA-HD-A633-01 12 10959134 10959134 G T TAS2R8 Missense_Mutation p.A149E 0.29 tolerated(0.06) possibly_damaging(0.653) TCGA-HD-A633-01 12 112699209 112699209 G A HECTD4 Missense_Mutation p.L779F 0.27 probably_damaging(0.974) TCGA-HD-A633-01 12 39760212 39760212 C A KIF21A Silent p.L281L 0.24 TCGA-HD-A633-01 12 51693066 51693066 C A BIN2 Nonsense_Mutation p.E175* 0.45 TCGA-HD-A633-01 12 54797556 54797556 T C ITGA5 Silent p.T543T 0.31 TCGA-HD-A633-01 12 57550690 57550690 G C LRP1 Silent p.G516G 0.25 TCGA-HD-A633-01 12 59282176 59282176 G A LRIG3 Silent p.L294L 0.26 TCGA-HD-A633-01 12 66610963 66610963 C A IRAK3 Missense_Mutation p.Q201K 0.29 deleterious(0.03) benign(0.124) TCGA-HD-A633-01 12 6672578 6672578 G A NOP2 Missense_Mutation p.S297F 0.56 deleterious(0) benign(0.401) TCGA-HD-A633-01 12 6672621 6672621 G A NOP2 Silent p.L283L 0.44 TCGA-HD-A633-01 12 7249421 7249421 C G C1RL Missense_Mutation p.E344Q 0.31 deleterious(0.03) possibly_damaging(0.768) TCGA-HD-A633-01 12 7651747 7651747 C T CD163 Silent p.G165G 0.25 TCGA-HD-A633-01 13 109562362 109562362 A G MYO16 Missense_Mutation p.T575A 0.31 tolerated(0.14) benign(0.113) TCGA-HD-A633-01 13 27333245 27333245 C T GPR12 Silent p.T240T 0.47 TCGA-HD-A633-01 13 52728303 52728303 G A NEK3 Silent p.F41F 0.20 TCGA-HD-A633-01 13 75923344 75923344 G C TBC1D4 Missense_Mutation p.P457R 0.27 deleterious(0) probably_damaging(1) TCGA-HD-A633-01 13 77650977 77650977 C A MYCBP2 Missense_Mutation p.G3873V 0.33 probably_damaging(0.998) TCGA-HD-A633-01 14 106494257 106494257 G A IGHV2-5 Missense_Mutation p.R79C 0.27 tolerated(0.11) possibly_damaging(0.456) TCGA-HD-A633-01 14 68265002 68265002 C - ZFYVE26 Frame_Shift_Del p.P660Lfs*9 0.24 TCGA-HD-A633-01 14 71227802 71227802 C A MAP3K9 Missense_Mutation p.K306N 0.27 deleterious(0) probably_damaging(0.996) TCGA-HD-A633-01 14 91804414 91804414 C G CCDC88C Missense_Mutation p.E329Q 0.30 tolerated(0.06) probably_damaging(1) TCGA-HD-A633-01 14 93712182 93712182 C A BTBD7 Nonsense_Mutation p.E858* 0.32 TCGA-HD-A633-01 15 23692363 23692363 C T GOLGA6L2 5'UTR 0.16 TCGA-HD-A633-01 15 33603214 33603214 G A RYR3 5'UTR 0.38 TCGA-HD-A633-01 15 40915630 40915631 - C CASC5 Frame_Shift_Ins p.L1084Sfs*12 0.16 TCGA-HD-A633-01 15 40917336 40917336 A G CASC5 Missense_Mutation p.K1651R 0.29 tolerated(0.37) benign(0.19) TCGA-HD-A633-01 15 41988704 41988704 C A MGA Missense_Mutation p.S499Y 0.19 deleterious(0) possibly_damaging(0.841) TCGA-HD-A633-01 15 42117612 42117612 G A MAPKBP1 Missense_Mutation p.R1508Q 0.39 deleterious(0.04) benign(0.015) TCGA-HD-A633-01 15 42503801 42503801 G T TMEM87A 3'UTR 0.16 TCGA-HD-A633-01 15 44106836 44106836 T G MFAP1 Missense_Mutation p.K160N 0.50 deleterious(0.04) benign(0.403) TCGA-HD-A633-01 15 48524979 48524979 G A SLC12A1 Missense_Mutation p.G344E 0.25 deleterious(0) probably_damaging(1) TCGA-HD-A633-01 15 50592997 50592997 G T GABPB1 Nonsense_Mutation p.S241* 0.26 TCGA-HD-A633-01 15 51741298 51741298 C T DMXL2 Missense_Mutation p.M2999I 0.17 deleterious(0.02) benign(0.03) TCGA-HD-A633-01 15 75980260 75980260 G A CSPG4 Missense_Mutation p.S1049L 0.26 deleterious(0.01) possibly_damaging(0.489) TCGA-HD-A633-01 15 77324641 77324641 C G PSTPIP1 Silent p.L248L 0.12 TCGA-HD-A633-01 16 1827827 1827827 G A SPSB3 Silent p.F214F 0.07 TCGA-HD-A633-01 16 2087943 2087943 G C SLC9A3R2 Missense_Mutation p.Q324H 0.19 deleterious(0.04) probably_damaging(0.986) TCGA-HD-A633-01 16 2088013 2088013 G A SLC9A3R2 3'UTR 0.29 TCGA-HD-A633-01 16 3076099 3076099 G A THOC6 Missense_Mutation p.D86N 0.30 deleterious(0.01) benign(0.086) TCGA-HD-A633-01 16 7568329 7568329 C A RBFOX1 Missense_Mutation p.Q90K 0.26 deleterious(0) probably_damaging(0.989) TCGA-HD-A633-01 17 11833298 11833298 C A DNAH9 Missense_Mutation p.P3998H 0.30 probably_damaging(0.918) TCGA-HD-A633-01 17 1578550 1578550 C G PRPF8 Missense_Mutation p.E986Q 0.31 tolerated(0.05) probably_damaging(0.979) TCGA-HD-A633-01 17 40825682 40825682 C G PLEKHH3 Missense_Mutation p.E157Q 0.35 deleterious(0) unknown(0) TCGA-HD-A633-01 17 40925508 40925508 C T VPS25 Silent p.F5F 0.31 TCGA-HD-A633-01 17 42334906 42334906 C T SLC4A1 Missense_Mutation p.E480K 0.33 tolerated(1) benign(0.004) TCGA-HD-A633-01 17 42335044 42335044 C T SLC4A1 Missense_Mutation p.E472K 0.47 deleterious(0) probably_damaging(0.994) TCGA-HD-A633-01 17 60766302 60766302 C T MRC2 Silent p.F1105F 0.33 TCGA-HD-A633-01 17 70645094 70645094 C T SLC39A11 Silent p.G266G 0.33 TCGA-HD-A633-01 17 71282441 71282441 C T CDC42EP4 Missense_Mutation p.E67K 0.30 tolerated(0.31) benign(0.042) TCGA-HD-A633-01 17 7573984 7573984 A G TP53 Missense_Mutation p.L348S 0.19 deleterious(0) probably_damaging(1) TCGA-HD-A633-01 17 7577503 7577504 AG T TP53 Frame_Shift_Del p.D259Efs*86 0.29 TCGA-HD-A633-01 17 79427630 79427630 C T RP11-1055B8.7 Missense_Mutation p.P2034S 0.33 benign(0.167) TCGA-HD-A633-01 18 22804708 22804708 G T ZNF521 Silent p.G1058G 0.30 TCGA-HD-A633-01 18 28980884 28980884 G C DSG4 Missense_Mutation p.D440H 0.34 deleterious(0.01) benign(0.072) TCGA-HD-A633-01 18 43535048 43535048 C A EPG5 Missense_Mutation p.G107V 0.26 tolerated_low_confidence(0.22) benign(0.037) TCGA-HD-A633-01 19 10600019 10600019 G C KEAP1 Missense_Mutation p.I519M 0.17 deleterious(0) probably_damaging(0.921) TCGA-HD-A633-01 19 11143985 11143985 G A SMARCA4 Missense_Mutation p.R1189Q 0.37 probably_damaging(0.999) TCGA-HD-A633-01 19 15918304 15918304 G A OR10H1 Missense_Mutation p.P182S 0.24 tolerated(0.46) possibly_damaging(0.772) TCGA-HD-A633-01 19 17017783 17017783 G A CPAMD8 Missense_Mutation p.R1383C 0.33 deleterious(0.05) possibly_damaging(0.827) TCGA-HD-A633-01 19 30500249 30500249 G C URI1 Missense_Mutation p.E342Q 0.24 deleterious(0) possibly_damaging(0.899) TCGA-HD-A633-01 19 47548510 47548510 C A NPAS1 Silent p.T458T 0.26 TCGA-HD-A633-01 19 50861832 50861832 G A NAPSA Missense_Mutation p.A414V 0.30 tolerated_low_confidence(0.11) benign(0.022) TCGA-HD-A633-01 19 51201115 51201115 G A SHANK1 Nonsense_Mutation p.Q616* 0.21 TCGA-HD-A633-01 19 51201121 51201121 G A SHANK1 Missense_Mutation p.R614C 0.16 possibly_damaging(0.531) TCGA-HD-A633-01 19 51359642 51359642 C A KLK3 Missense_Mutation p.H65N 0.24 deleterious(0) probably_damaging(0.998) TCGA-HD-A633-01 19 52497170 52497170 G C ZNF615 Missense_Mutation p.L398V 0.25 deleterious(0) probably_damaging(0.998) TCGA-HD-A633-01 19 58290907 58290907 G A ZNF586 Missense_Mutation p.E318K 0.36 tolerated(0.2) benign(0.109) TCGA-HD-A633-01 19 58361405 58361405 C G ZNF587 5'UTR 0.29 TCGA-HD-A633-01 1 110259945 110259945 C T GSTM5 Intron 0.35 TCGA-HD-A633-01 1 115222935 115222935 C A AMPD1 Missense_Mutation p.D271Y 0.36 deleterious(0) benign(0.372) TCGA-HD-A633-01 1 151378561 151378561 C A POGZ Missense_Mutation p.A984S 0.28 deleterious(0) probably_damaging(0.993) TCGA-HD-A633-01 1 161954039 161954039 G A OLFML2B Missense_Mutation p.P560L 0.34 deleterious(0) possibly_damaging(0.869) TCGA-HD-A633-01 1 162558505 162558505 C T UAP1 Missense_Mutation p.H351Y 0.27 tolerated(1) probably_damaging(0.951) TCGA-HD-A633-01 1 169345966 169345966 G T BLZF1 Missense_Mutation p.A73S 0.38 tolerated_low_confidence(0.34) benign(0.053) TCGA-HD-A633-01 1 170508704 170508704 G A GORAB Missense_Mutation p.E164K 0.23 deleterious(0.01) probably_damaging(0.955) TCGA-HD-A633-01 1 178745957 178745958 - T RALGPS2 Splice_Site p.X19_splice 0.18 TCGA-HD-A633-01 1 205495568 205495568 C T CDK18 Silent p.L245L 0.29 TCGA-HD-A633-01 1 207790136 207790136 C G CR1 Missense_Mutation p.S2293C 0.29 tolerated(0.08) probably_damaging(0.971) TCGA-HD-A633-01 1 21048305 21048305 C T SH2D5 Missense_Mutation p.E418K 0.31 deleterious_low_confidence(0.05) probably_damaging(0.994) TCGA-HD-A633-01 1 230846356 230846356 C T AGT Missense_Mutation p.E81K 0.32 deleterious(0) probably_damaging(1) TCGA-HD-A633-01 1 240990401 240990401 C T RGS7 Silent p.R227R 0.29 TCGA-HD-A633-01 1 243579001 243579001 C T SDCCAG8 Intron 0.24 TCGA-HD-A633-01 1 27121446 27121446 C G PIGV Missense_Mutation p.I307M 0.28 deleterious(0) probably_damaging(0.961) TCGA-HD-A633-01 1 40661392 40661394 TTC - RLF In_Frame_Del p.L190del 0.38 TCGA-HD-A633-01 1 41012549 41012549 A C ZNF684 Missense_Mutation p.K185T 0.27 deleterious(0) benign(0.32) TCGA-HD-A633-01 1 46656406 46656406 G C POMGNT1 Silent p.L530L 0.36 TCGA-HD-A633-01 1 980739 980748 GTGCCTGCCA - AGRN Frame_Shift_Del p.C793Tfs*67 0.43 TCGA-HD-A633-01 20 56098196 56098196 C A CTCFL Nonsense_Mutation p.E228* 0.39 TCGA-HD-A633-01 20 6031435 6031435 G A LRRN4 Silent p.L284L 0.29 TCGA-HD-A633-01 20 61461171 61461171 G A COL9A3 Silent p.A387A 0.40 TCGA-HD-A633-01 22 22868570 22868570 G C ZNF280A Missense_Mutation p.T462R 0.57 deleterious(0) probably_damaging(0.98) TCGA-HD-A633-01 22 41620989 41620989 G C L3MBTL2 Missense_Mutation p.E424Q 0.42 tolerated(0.22) benign(0.002) TCGA-HD-A633-01 2 170003273 170003273 C G LRP2 Missense_Mutation p.D4263H 0.22 probably_damaging(0.928) TCGA-HD-A633-01 2 175689193 175689193 C A CHN1 Missense_Mutation p.W227C 0.33 deleterious(0) probably_damaging(0.999) TCGA-HD-A633-01 2 187611928 187611928 G C FAM171B Missense_Mutation p.L225F 0.50 tolerated(0.09) probably_damaging(1) TCGA-HD-A633-01 2 207026158 207026158 G T EEF1B2 Missense_Mutation p.D98Y 0.38 deleterious(0) probably_damaging(0.962) TCGA-HD-A633-01 2 223436724 223436724 C T FARSB Missense_Mutation p.G546R 0.36 deleterious(0) possibly_damaging(0.805) TCGA-HD-A633-01 2 24297025 24297026 - TA SF3B14 Frame_Shift_Ins p.R24* 0.24 TCGA-HD-A633-01 2 38298106 38298107 - A CYP1B1 Frame_Shift_Ins p.S464Ffs*14 0.23 TCGA-HD-A633-01 2 74699249 74699249 G A MRPL53 Silent p.R112R 0.17 TCGA-HD-A633-01 2 79363221 79363221 G C REG1P RNA 0.29 TCGA-HD-A633-01 2 88367419 88367419 C G SMYD1 Missense_Mutation p.F12L 0.24 deleterious(0.01) possibly_damaging(0.753) TCGA-HD-A633-01 3 135870279 135870279 G A MSL2 Missense_Mutation p.P482S 0.24 deleterious(0) probably_damaging(0.998) TCGA-HD-A633-01 3 138669499 138669499 C G C3orf72 3'UTR 0.28 TCGA-HD-A633-01 3 14708357 14708357 G C CCDC174 Missense_Mutation p.M209I 0.39 deleterious(0) benign(0.063) TCGA-HD-A633-01 3 170715727 170715727 C T SLC2A2 Missense_Mutation p.E514K 0.16 deleterious(0) possibly_damaging(0.821) TCGA-HD-A633-01 3 180377338 180377338 G C CCDC39 Missense_Mutation p.R214G 0.14 deleterious(0) possibly_damaging(0.872) TCGA-HD-A633-01 3 183273362 183273362 G C KLHL6 Missense_Mutation p.S27C 0.19 tolerated(0.09) benign(0.346) TCGA-HD-A633-01 3 184003327 184003327 C T ECE2 Missense_Mutation p.R522C 0.46 deleterious(0) probably_damaging(1) TCGA-HD-A633-01 3 193039614 193039614 C A ATP13A5 Missense_Mutation p.A591S 0.40 tolerated(0.12) benign(0.262) TCGA-HD-A633-01 3 69101126 69101126 A T TMF1 Missense_Mutation p.W38R 0.57 deleterious_low_confidence(0.03) possibly_damaging(0.835) TCGA-HD-A633-01 4 151505378 151505378 G A MAB21L2 3'UTR 0.33 TCGA-HD-A633-01 4 175896836 175896836 T A ADAM29 Missense_Mutation p.Y54N 0.34 deleterious(0) probably_damaging(1) TCGA-HD-A633-01 4 184182526 184182526 G A WWC2 Missense_Mutation p.D584N 0.27 tolerated(0.06) probably_damaging(0.91) TCGA-HD-A633-01 4 187542225 187542225 C A FAT1 Nonsense_Mutation p.E1839* 0.50 TCGA-HD-A633-01 4 66233087 66233087 G T EPHA5 Missense_Mutation p.H638N 0.30 tolerated(0.34) possibly_damaging(0.885) TCGA-HD-A633-01 4 71509073 71509073 G A ENAM Missense_Mutation p.D644N 0.24 tolerated(0.06) benign(0.149) TCGA-HD-A633-01 4 73013516 73013516 G A NPFFR2 Missense_Mutation p.S519N 0.45 tolerated_low_confidence(0.22) benign(0.002) TCGA-HD-A633-01 5 140052314 140052314 G A DND1 Missense_Mutation p.S107L 0.30 deleterious(0.01) possibly_damaging(0.621) TCGA-HD-A633-01 5 154330430 154330430 C T MRPL22 Nonsense_Mutation p.R43* 0.28 TCGA-HD-A633-01 5 156381740 156381740 G A TIMD4 Missense_Mutation p.T29M 0.23 tolerated(0.21) benign(0.329) TCGA-HD-A633-01 5 156760406 156760406 G A CYFIP2 Silent p.L753L 0.25 TCGA-HD-A633-01 5 179143227 179143227 C T CANX Silent p.D281D 0.20 TCGA-HD-A633-01 5 7717315 7717315 G T ADCY2 Missense_Mutation p.R556S 0.23 tolerated(0.23) benign(0.411) TCGA-HD-A633-01 5 78610397 78610397 A G JMY Silent p.E794E 0.30 TCGA-HD-A633-01 5 79965953 79965953 C G MSH3 Nonsense_Mutation p.S206* 0.15 TCGA-HD-A633-01 6 16328574 16328574 C T ATXN1 5'UTR 0.24 TCGA-HD-A633-01 6 17779326 17779326 G A KIF13A Missense_Mutation p.T1315I 0.32 tolerated(0.15) possibly_damaging(0.582) TCGA-HD-A633-01 6 26158619 26158619 C G HIST1H2BD Missense_Mutation p.I74M 0.32 deleterious_low_confidence(0.01) benign(0.227) TCGA-HD-A633-01 6 26197305 26197305 C T HIST1H3D Silent p.S58S 0.34 TCGA-HD-A633-01 6 26205145 26205145 G A HIST1H4E Silent p.L91L 0.23 TCGA-HD-A633-01 6 30688225 30688228 TTAC - TUBB 5'UTR 0.38 TCGA-HD-A633-01 6 30856420 30856420 C G DDR1 Intron 0.27 TCGA-HD-A633-01 6 31729648 31729648 C T MSH5 Silent p.C746C 0.36 TCGA-HD-A633-01 6 33287306 33287306 G A DAXX Silent p.F597F 0.36 TCGA-HD-A633-01 6 43143452 43143452 G A SRF Silent p.L263L 0.29 TCGA-HD-A633-01 6 43143635 43143635 G C SRF Missense_Mutation p.K324N 0.23 deleterious(0) benign(0.044) TCGA-HD-A633-01 6 43269338 43269338 C T SLC22A7 Silent p.A323A 0.24 TCGA-HD-A633-01 7 150389761 150389761 G A GIMAP2 Silent p.V129V 0.38 TCGA-HD-A633-01 7 21948040 21948040 G A CDCA7L Missense_Mutation p.P130L 0.18 tolerated(0.11) benign(0.002) TCGA-HD-A633-01 7 26412152 26412152 C T SNX10 Missense_Mutation p.S189L 0.35 tolerated_low_confidence(0.08) benign(0.017) TCGA-HD-A633-01 7 4899702 4899702 C T PAPOLB Silent p.V579V 0.20 TCGA-HD-A633-01 7 66479369 66479369 G T TYW1 Missense_Mutation p.V131F 0.17 deleterious(0.03) possibly_damaging(0.795) TCGA-HD-A633-01 7 8008936 8008936 C T GLCCI1 5'UTR 0.28 TCGA-HD-A633-01 7 88847522 88847522 C - ZNF804B Frame_Shift_Del p.Y56Tfs*30 0.30 TCGA-HD-A633-01 7 96651680 96651680 C T DLX5 Silent p.E119E 0.26 TCGA-HD-A633-01 8 133925400 133925400 G A TG Missense_Mutation p.R1423H 0.32 tolerated(0.55) benign(0.007) TCGA-HD-A633-01 8 144332689 144332689 G A ZFP41 3'UTR 0.47 TCGA-HD-A633-01 8 26492304 26492304 C T DPYSL2 Silent p.A233A 0.33 TCGA-HD-A633-01 9 100899883 100899883 C G CORO2A Missense_Mutation p.E97Q 0.31 deleterious(0.02) benign(0.035) TCGA-HD-A633-01 9 121929934 121929934 A T BRINP1 Missense_Mutation p.S572T 0.39 deleterious(0) possibly_damaging(0.827) TCGA-HD-A633-01 9 123540631 123540631 G A FBXW2 Missense_Mutation p.A228V 0.16 deleterious(0.01) benign(0.385) TCGA-HD-A633-01 9 130479621 130479621 G C TTC16 Missense_Mutation p.R67T 0.21 tolerated(0.09) possibly_damaging(0.875) TCGA-HD-A633-01 9 21971128 21971128 G - CDKN2A Frame_Shift_Del p.T77Ifs*69 0.33 TCGA-HD-A633-01 9 21971129 21971129 T A CDKN2A Missense_Mutation p.T77S 0.30 tolerated(0.2) possibly_damaging(0.496) TCGA-HD-A633-01 9 73296482 73296482 G A TRPM3 Missense_Mutation p.R429W 0.20 deleterious(0) probably_damaging(0.999) TCGA-HD-A633-01 9 74360219 74360219 G A TMEM2 Missense_Mutation p.S250L 0.33 deleterious(0.04) benign(0.003) TCGA-HD-A633-01 X 135431791 135431791 G T GPR112 Nonsense_Mutation p.E1976* 0.72 TCGA-HD-A633-01 X 34149314 34149314 C T FAM47A Missense_Mutation p.R361H 0.59 tolerated(1) benign(0) TCGA-HD-A633-01 X 47104856 47104856 G A USP11 Missense_Mutation p.E792K 0.35 deleterious(0) probably_damaging(0.969) TCGA-HD-A633-01 X 48887544 48887546 CTC - TFE3 3'UTR 0.68 TCGA-HD-A634-01 10 121196183 121196183 C T GRK5 Silent p.Y253Y 0.09 TCGA-HD-A634-01 10 135015258 135015258 C T KNDC1 Silent p.P1081P 0.40 TCGA-HD-A634-01 11 124794758 124794758 C T HEPACAM Missense_Mutation p.R98H 0.41 deleterious(0) probably_damaging(1) TCGA-HD-A634-01 11 129772073 129772073 G C PRDM10 3'UTR 0.46 TCGA-HD-A634-01 11 60698020 60698020 G T TMEM132A Missense_Mutation p.R302L 0.43 deleterious(0) benign(0.189) TCGA-HD-A634-01 11 68125186 68125186 G A LRP5 Missense_Mutation p.R186Q 0.07 deleterious(0) probably_damaging(1) TCGA-HD-A634-01 11 93494888 93494888 T G C11orf54 3'UTR 0.17 TCGA-HD-A634-01 12 48189110 48189110 C T HDAC7 Missense_Mutation p.E381K 0.35 tolerated(0.12) benign(0.01) TCGA-HD-A634-01 13 101320926 101320926 C T TMTC4 Silent p.K42K 0.35 TCGA-HD-A634-01 14 68228053 68228053 C A ZFYVE26 Intron 0.35 TCGA-HD-A634-01 16 15694386 15694386 G T KIAA0430 Missense_Mutation p.S1571Y 0.17 deleterious(0.04) benign(0.182) TCGA-HD-A634-01 16 15694388 15694388 G T KIAA0430 Silent p.L1570L 0.17 TCGA-HD-A634-01 16 2051046 2051046 C T ZNF598 Missense_Mutation p.R387H 0.44 benign(0.03) TCGA-HD-A634-01 16 2481177 2481177 A - CCNF Frame_Shift_Del p.R22Efs*2 0.27 TCGA-HD-A634-01 16 72991587 72991587 G A ZFHX3 Missense_Mutation p.R820C 0.40 probably_damaging(0.993) TCGA-HD-A634-01 16 90028152 90028152 G A DEF8 Silent p.V290V 0.47 TCGA-HD-A634-01 17 40985644 40985644 C T PSME3 5'UTR 0.36 TCGA-HD-A634-01 17 73888345 73888345 C T TRIM65 Intron 0.38 TCGA-HD-A634-01 17 7612986 7612986 G A EFNB3 3'UTR 0.31 TCGA-HD-A634-01 18 18547728 18547728 C T ROCK1 Silent p.L1059L 0.31 TCGA-HD-A634-01 18 56204900 56204900 G A ALPK2 Missense_Mutation p.T840M 0.31 tolerated(0.17) benign(0) TCGA-HD-A634-01 19 22604998 22604998 A G ZNF98 Missense_Mutation p.M10T 0.27 deleterious(0.03) benign(0.017) TCGA-HD-A634-01 19 56160925 56160925 C T CCDC106 Silent p.F96F 0.36 TCGA-HD-A634-01 1 154527222 154527222 C A UBE2Q1 Nonsense_Mutation p.E193* 0.50 TCGA-HD-A634-01 1 173873136 173873136 G A SERPINC1 Missense_Mutation p.P429L 0.43 tolerated(0.66) benign(0.003) TCGA-HD-A634-01 1 186823502 186823502 C - PLA2G4A Frame_Shift_Del p.P6Lfs*6 0.31 TCGA-HD-A634-01 1 216258155 216258155 C T USH2A Silent p.P1684P 0.17 TCGA-HD-A634-01 1 223396790 223396790 G A SUSD4 Silent p.P415P 0.25 TCGA-HD-A634-01 1 228645862 228645862 C T HIST3H2BB Missense_Mutation p.P11L 0.39 deleterious_low_confidence(0.03) benign(0.1) TCGA-HD-A634-01 1 247835701 247835701 A T OR13G1 Missense_Mutation p.Y215N 0.38 deleterious(0) probably_damaging(0.952) TCGA-HD-A634-01 1 40421045 40421045 G T MFSD2A Silent p.P27P 0.32 TCGA-HD-A634-01 1 42660617 42660617 C A FOXJ3 Missense_Mutation p.S293I 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-HD-A634-01 20 43936862 43936862 C T RBPJL Silent p.D34D 0.26 TCGA-HD-A634-01 20 60791509 60791509 G A HRH3 Silent p.G297G 0.89 TCGA-HD-A634-01 21 45861590 45861590 G A TRPM2 Missense_Mutation p.D1468N 0.49 tolerated(0.09) benign(0.013) TCGA-HD-A634-01 2 141093256 141093256 C A LRP1B Missense_Mutation p.G4015V 0.44 probably_damaging(0.953) TCGA-HD-A634-01 2 166533063 166533063 G T CSRNP3 Missense_Mutation p.R217L 0.68 deleterious(0) probably_damaging(0.994) TCGA-HD-A634-01 2 173460732 173460732 T C PDK1 3'UTR 0.62 TCGA-HD-A634-01 2 188225462 188225462 G C CALCRL Missense_Mutation p.S215C 0.50 deleterious(0.02) benign(0.008) TCGA-HD-A634-01 3 184588531 184588531 G A VPS8 Missense_Mutation p.D558N 0.46 tolerated(0.06) possibly_damaging(0.754) TCGA-HD-A634-01 3 8671394 8671394 C A SSUH2 Missense_Mutation p.G182W 0.55 deleterious(0) probably_damaging(0.999) TCGA-HD-A634-01 4 102981427 102981427 C A BANK1 Missense_Mutation p.Q677K 0.39 deleterious(0.02) probably_damaging(0.979) TCGA-HD-A634-01 4 190864424 190864424 G A FRG1 Missense_Mutation p.V44I 0.44 tolerated(0.56) benign(0.023) TCGA-HD-A634-01 4 94377041 94377041 C - GRID2 Frame_Shift_Del p.P593Hfs*8 0.29 TCGA-HD-A634-01 5 140736453 140736453 C A PCDHGA4 Silent p.I562I 0.33 TCGA-HD-A634-01 5 140801542 140801542 G A PCDHGA11 Missense_Mutation p.V250M 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.697) TCGA-HD-A634-01 5 149629830 149629830 C T CAMK2A Missense_Mutation p.V287M 0.35 tolerated_low_confidence(0.06) probably_damaging(0.933) TCGA-HD-A634-01 5 157216481 157216485 GGCAA - CLINT1 Frame_Shift_Del p.P492Yfs*4 0.41 TCGA-HD-A634-01 6 30673819 30673819 G A MDC1 Silent p.A1047A 0.44 TCGA-HD-A634-01 6 34957002 34957002 G A ANKS1A Missense_Mutation p.R404K 0.37 tolerated_low_confidence(0.33) benign(0.005) TCGA-HD-A634-01 7 151836322 151836322 C T KMT2C Missense_Mutation p.R4828H 0.40 probably_damaging(0.982) TCGA-HD-A634-01 7 21940604 21940604 A G CDCA7L 3'UTR 0.14 TCGA-HD-A634-01 7 74193734 74193734 C T NCF1 Missense_Mutation p.R121C 0.14 deleterious(0) probably_damaging(0.989) TCGA-HD-A634-01 7 80430072 80430072 C A SEMA3C Splice_Site p.X329_splice 0.39 TCGA-HD-A634-01 8 87641258 87641258 C T CNGB3 Missense_Mutation p.A457T 0.22 tolerated(0.28) benign(0.009) TCGA-HD-A634-01 9 32631299 32631299 G C TAF1L Missense_Mutation p.P1427A 0.05 tolerated(0.06) probably_damaging(0.998) TCGA-HD-A634-01 X 21675273 21675273 G T KLHL34 Missense_Mutation p.R212S 0.72 tolerated(0.06) probably_damaging(0.916) TCGA-HD-A634-01 X 41060380 41060380 G - USP9X Frame_Shift_Del p.L1559* 0.46 TCGA-HD-A634-01 X 53423264 53423264 A G SMC1A Silent p.I915I 0.91 TCGA-HD-A634-01 X 73065755 73065756 - C XIST RNA 0.32 TCGA-HD-A634-01 Y 8657050 8657050 C T TTTY11 RNA 1.00 TCGA-HD-A6HZ-01 10 50819604 50819604 G A SLC18A3 Missense_Mutation p.R273Q 0.19 tolerated(0.2) benign(0.252) TCGA-HD-A6HZ-01 10 88459093 88459093 C T LDB3 Intron 0.14 TCGA-HD-A6HZ-01 11 111594274 111594274 T C SIK2 Silent p.F734F 0.14 TCGA-HD-A6HZ-01 11 6422634 6422634 C T APBB1 Missense_Mutation p.R508H 0.26 tolerated(0.06) probably_damaging(0.982) TCGA-HD-A6HZ-01 12 109520485 109520485 G A USP30 Silent p.T295T 0.28 TCGA-HD-A6HZ-01 12 55887079 55887079 T A OR6C68 Silent p.I306I 0.31 TCGA-HD-A6HZ-01 12 66935717 66935717 G A GRIP1 Silent p.G50G 0.05 TCGA-HD-A6HZ-01 12 8196668 8196668 C G FOXJ2 Missense_Mutation p.S200C 0.10 deleterious(0.02) possibly_damaging(0.533) TCGA-HD-A6HZ-01 13 37605971 37605971 G A SUPT20H Missense_Mutation p.P257S 0.25 tolerated(0.06) benign(0.04) TCGA-HD-A6HZ-01 14 105404671 105404671 G A AHNAK2 Missense_Mutation p.S5706L 0.12 probably_damaging(0.991) TCGA-HD-A6HZ-01 14 105406038 105406038 G T AHNAK2 Silent p.L5250L 0.16 TCGA-HD-A6HZ-01 14 105407653 105407653 G A AHNAK2 Missense_Mutation p.S4712F 0.17 possibly_damaging(0.879) TCGA-HD-A6HZ-01 14 105410723 105410723 G A AHNAK2 Nonsense_Mutation p.Q3689* 0.10 TCGA-HD-A6HZ-01 14 105413482 105413482 G A AHNAK2 Missense_Mutation p.A2769V 0.11 possibly_damaging(0.467) TCGA-HD-A6HZ-01 14 105413483 105413483 C A AHNAK2 Missense_Mutation p.A2769S 0.11 possibly_damaging(0.545) TCGA-HD-A6HZ-01 14 105414045 105414045 G A AHNAK2 Silent p.L2581L 0.12 TCGA-HD-A6HZ-01 14 105414628 105414628 G T AHNAK2 Missense_Mutation p.P2387Q 0.11 possibly_damaging(0.904) TCGA-HD-A6HZ-01 14 105419160 105419160 G A AHNAK2 Silent p.L876L 0.12 TCGA-HD-A6HZ-01 14 105419469 105419469 G C AHNAK2 Silent p.L773L 0.13 TCGA-HD-A6HZ-01 14 105420226 105420226 G C AHNAK2 Nonsense_Mutation p.S521* 0.15 TCGA-HD-A6HZ-01 14 106054703 106054703 C T IGHA2 Silent p.P10P 0.16 TCGA-HD-A6HZ-01 14 106109690 106109690 C T IGHG2 Silent p.L277L 0.07 TCGA-HD-A6HZ-01 14 22447081 22447081 A C TRAV8-6 Missense_Mutation p.Q21P 0.11 deleterious(0) possibly_damaging(0.665) TCGA-HD-A6HZ-01 14 23374209 23374209 G A RBM23 Nonsense_Mutation p.R247* 0.13 TCGA-HD-A6HZ-01 14 93685022 93685022 G A UBR7 Missense_Mutation p.V251I 0.22 tolerated(0.19) benign(0.001) TCGA-HD-A6HZ-01 15 23811019 23811019 G A MKRN3 Silent p.P30P 0.26 TCGA-HD-A6HZ-01 15 55653012 55653013 GC A CCPG1 Frame_Shift_Del p.A320Sfs*9 0.09 TCGA-HD-A6HZ-01 16 29827841 29827841 T A PAGR1 5'UTR 0.22 TCGA-HD-A6HZ-01 16 29918258 29918258 G A KCTD13 Missense_Mutation p.H309Y 0.19 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-HD-A6HZ-01 16 3016751 3016751 C T KREMEN2 Missense_Mutation p.P199S 0.18 tolerated(0.47) benign(0.292) TCGA-HD-A6HZ-01 16 68265275 68265275 C T ESRP2 Missense_Mutation p.R506Q 0.10 tolerated(0.4) probably_damaging(0.994) TCGA-HD-A6HZ-01 17 27031353 27031353 C T PROCA1 Missense_Mutation p.E110K 0.05 tolerated(0.08) benign(0.01) TCGA-HD-A6HZ-01 17 39120032 39120032 G A KRT39 Silent p.Y185Y 0.15 TCGA-HD-A6HZ-01 17 40269510 40269510 C T KAT2A Silent p.K511K 0.15 TCGA-HD-A6HZ-01 17 56585544 56585544 G A MTMR4 Missense_Mutation p.R215W 0.08 deleterious(0) probably_damaging(1) TCGA-HD-A6HZ-01 17 57288115 57288115 C T SMG8 Nonsense_Mutation p.Q235* 0.10 TCGA-HD-A6HZ-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.29 TCGA-HD-A6HZ-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.14 deleterious(0) probably_damaging(0.996) TCGA-HD-A6HZ-01 17 79226454 79226454 G A SLC38A10 Missense_Mutation p.R496C 0.18 deleterious(0) probably_damaging(0.999) TCGA-HD-A6HZ-01 17 8222393 8222393 C T ARHGEF15 Missense_Mutation p.P701L 0.27 tolerated(0.2) benign(0.253) TCGA-HD-A6HZ-01 19 1005239 1005239 G C GRIN3B Missense_Mutation p.G580A 0.10 tolerated(0.06) possibly_damaging(0.638) TCGA-HD-A6HZ-01 19 15582727 15582727 C T PGLYRP2 Silent p.T439T 0.17 TCGA-HD-A6HZ-01 19 23544385 23544385 C G ZNF91 Missense_Mutation p.E466Q 0.10 tolerated(0.12) benign(0.051) TCGA-HD-A6HZ-01 19 30308111 30308111 A G CCNE1 Missense_Mutation p.D83G 0.10 tolerated(0.14) benign(0.006) TCGA-HD-A6HZ-01 19 31025841 31025841 G A ZNF536 Missense_Mutation p.C753Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-HD-A6HZ-01 19 47354031 47354031 C T AP2S1 5'UTR 0.07 TCGA-HD-A6HZ-01 19 50926135 50926135 C A SPIB Silent p.A60A 0.09 TCGA-HD-A6HZ-01 19 51918188 51918188 C T SIGLEC10 Nonsense_Mutation p.W502* 0.21 TCGA-HD-A6HZ-01 1 161166211 161166211 A T ADAMTS4 Intron 0.24 TCGA-HD-A6HZ-01 1 18554484 18554484 C T IGSF21 Missense_Mutation p.R55W 0.12 deleterious(0) probably_damaging(0.998) TCGA-HD-A6HZ-01 1 206822161 206822161 C T DYRK3 Missense_Mutation p.R540W 0.15 deleterious(0) possibly_damaging(0.72) TCGA-HD-A6HZ-01 1 22216609 22216609 C A HSPG2 Nonsense_Mutation p.E147* 0.14 TCGA-HD-A6HZ-01 1 248813331 248813331 G C OR2T27 Silent p.L285L 0.19 TCGA-HD-A6HZ-01 1 40723841 40723841 C A ZMPSTE24 5'UTR 0.13 TCGA-HD-A6HZ-01 1 51829572 51829572 G A EPS15 Silent p.I775I 0.17 TCGA-HD-A6HZ-01 20 21689276 21689276 G A PAX1 Missense_Mutation p.A333T 0.13 tolerated_low_confidence(0.1) benign(0.027) TCGA-HD-A6HZ-01 20 23065128 23065128 C T CD93 Missense_Mutation p.V568M 0.05 tolerated(0.39) benign(0.019) TCGA-HD-A6HZ-01 20 42199306 42199306 G A SGK2 Missense_Mutation p.R197K 0.08 tolerated(0.16) benign(0.436) TCGA-HD-A6HZ-01 21 30403060 30403060 C T USP16 Missense_Mutation p.P69L 0.12 deleterious(0) possibly_damaging(0.87) TCGA-HD-A6HZ-01 22 35683435 35683435 G C HMGXB4 Missense_Mutation p.M486I 0.23 tolerated(0.54) benign(0.001) TCGA-HD-A6HZ-01 22 41513816 41513816 G T EP300 Missense_Mutation p.Q240H 0.24 unknown(0) TCGA-HD-A6HZ-01 22 46793727 46793728 - C CELSR1 Frame_Shift_Ins p.T1849Dfs*23 0.28 TCGA-HD-A6HZ-01 2 108627019 108627019 T A SLC5A7 Missense_Mutation p.L482H 0.08 deleterious(0) benign(0.443) TCGA-HD-A6HZ-01 2 109539885 109539885 C G EDAR Silent p.P127P 0.07 TCGA-HD-A6HZ-01 2 132021794 132021794 C T POTEE Silent p.D922D 0.08 TCGA-HD-A6HZ-01 2 133403121 133403121 C G GPR39 Nonsense_Mutation p.S435* 0.05 TCGA-HD-A6HZ-01 2 140990816 140990816 T G LRP1B Missense_Mutation p.D4580A 0.18 possibly_damaging(0.539) TCGA-HD-A6HZ-01 2 178095964 178095964 C G NFE2L2 Missense_Mutation p.R456T 0.11 deleterious(0) probably_damaging(0.999) TCGA-HD-A6HZ-01 2 179422111 179422111 C T TTN Missense_Mutation p.R29293H 0.18 TCGA-HD-A6HZ-01 2 216288916 216288916 G T FN1 Nonsense_Mutation p.S390* 0.16 TCGA-HD-A6HZ-01 2 24985573 24985573 G A NCOA1 Silent p.L1361L 0.11 TCGA-HD-A6HZ-01 2 44079860 44079860 C G ABCG8 Missense_Mutation p.R273G 0.05 deleterious(0.02) benign(0.338) TCGA-HD-A6HZ-01 2 47378589 47378589 C T C2orf61 Silent p.V69V 0.27 TCGA-HD-A6HZ-01 2 54558137 54558137 C T C2orf73 Nonsense_Mutation p.Q9* 0.28 TCGA-HD-A6HZ-01 3 151067854 151067854 C G MED12L Missense_Mutation p.S718C 0.22 tolerated(0.05) probably_damaging(0.991) TCGA-HD-A6HZ-01 3 179138709 179138709 G A GNB4 Missense_Mutation p.R22W 0.20 deleterious(0) probably_damaging(0.976) TCGA-HD-A6HZ-01 3 42680826 42680826 G T NKTR Missense_Mutation p.K1210N 0.11 deleterious_low_confidence(0.02) benign(0.048) TCGA-HD-A6HZ-01 3 52255722 52255722 G A TLR9 Silent p.Y1024Y 0.38 TCGA-HD-A6HZ-01 4 119059244 119059244 G T NDST3 Silent p.V420V 0.13 TCGA-HD-A6HZ-01 4 123227048 123227048 G T KIAA1109 Missense_Mutation p.G3230V 0.12 possibly_damaging(0.571) TCGA-HD-A6HZ-01 4 155254036 155254036 C T DCHS2 Silent p.A609A 0.12 TCGA-HD-A6HZ-01 4 158284159 158284159 G A GRIA2 Missense_Mutation p.G872D 0.06 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-HD-A6HZ-01 4 184606264 184606264 C G TRAPPC11 Missense_Mutation p.S532C 0.15 deleterious(0.01) possibly_damaging(0.7) TCGA-HD-A6HZ-01 4 20550730 20550730 G T SLIT2 Missense_Mutation p.G823V 0.22 deleterious(0) probably_damaging(0.918) TCGA-HD-A6HZ-01 4 73414354 73414354 C G ADAMTS3 Silent p.L115L 0.12 TCGA-HD-A6HZ-01 4 91229789 91229789 T - CCSER1 Frame_Shift_Del p.F119Lfs*9 0.18 TCGA-HD-A6HZ-01 5 140474630 140474630 T A PCDHB2 Missense_Mutation p.L86M 0.20 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-HD-A6HZ-01 6 117650502 117650502 G A ROS1 Missense_Mutation p.L1786F 0.16 deleterious(0) possibly_damaging(0.883) TCGA-HD-A6HZ-01 6 30638712 30638712 G A DHX16 Missense_Mutation p.T155I 0.18 tolerated(0.18) unknown(0) TCGA-HD-A6HZ-01 6 43323362 43323362 C G ZNF318 Silent p.L570L 0.32 TCGA-HD-A6HZ-01 6 47680273 47680273 G A GPR115 Missense_Mutation p.A161T 0.15 deleterious(0.01) probably_damaging(0.929) TCGA-HD-A6HZ-01 6 63995530 63995530 C T LGSN Missense_Mutation p.V98M 0.13 tolerated(0.09) possibly_damaging(0.727) TCGA-HD-A6HZ-01 6 87968276 87968276 T G ZNF292 Silent p.A1643A 0.20 TCGA-HD-A6HZ-01 7 107412532 107412532 T A SLC26A3 Missense_Mutation p.I677F 0.38 deleterious(0) probably_damaging(0.931) TCGA-HD-A6HZ-01 7 138957129 138957130 AA - UBN2 Frame_Shift_Del p.E553Afs*4 0.09 TCGA-HD-A6HZ-01 7 139257887 139257887 C T HIPK2 Missense_Mutation p.R1128H 0.17 tolerated(0.06) benign(0.015) TCGA-HD-A6HZ-01 7 27195954 27195954 C T HOXA7 Missense_Mutation p.G71S 0.16 tolerated(0.19) benign(0.01) TCGA-HD-A6HZ-01 7 82538324 82538324 G A PCLO Missense_Mutation p.H4436Y 0.09 unknown(0) TCGA-HD-A6HZ-01 7 86493653 86493653 C A GRM3 Silent p.S874S 0.08 TCGA-HD-A6HZ-01 8 145737553 145737553 C T RECQL4 Silent p.L1070L 0.11 TCGA-HD-A6HZ-01 8 20005172 20005172 C T SLC18A1 Silent p.S424S 0.15 TCGA-HD-A6HZ-01 9 100388079 100388079 T G TSTD2 Silent p.S122S 0.16 TCGA-HD-A6HZ-01 9 117005797 117005797 G A COL27A1 Missense_Mutation p.G964D 0.40 unknown(0) TCGA-HD-A6HZ-01 9 139355672 139355672 C T SEC16A Missense_Mutation p.A1650T 0.29 deleterious(0) probably_damaging(0.995) TCGA-HD-A6HZ-01 9 21334148 21334148 C T KLHL9 Missense_Mutation p.M237I 0.06 deleterious(0.05) possibly_damaging(0.479) TCGA-HD-A6HZ-01 9 88968122 88968122 G C ZCCHC6 5'UTR 0.17 TCGA-HD-A6HZ-01 9 91940845 91940849 CAGCA TACC SECISBP2 Frame_Shift_Del p.Q156Yfs*17 0.20 TCGA-HD-A6HZ-01 X 135862940 135862940 C T ARHGEF6 Silent p.S34S 0.37 TCGA-HD-A6HZ-01 X 152813367 152813367 C T ATP2B3 Missense_Mutation p.R345W 0.30 deleterious(0) probably_damaging(0.952) TCGA-HD-A6HZ-01 X 50213406 50213406 G C DGKK RNA 0.19 TCGA-HD-A6I0-01 10 134598434 134598434 C T NKX6-2 Missense_Mutation p.G274R 0.35 deleterious_low_confidence(0) benign(0) TCGA-HD-A6I0-01 10 33211203 33211203 C G ITGB1 Missense_Mutation p.L370F 0.35 deleterious(0) probably_damaging(0.996) TCGA-HD-A6I0-01 10 47087754 47087754 T C NPY4R Missense_Mutation p.F324S 0.11 deleterious(0) probably_damaging(0.994) TCGA-HD-A6I0-01 10 64966598 64966598 C T JMJD1C Missense_Mutation p.D1611N 0.32 deleterious(0.02) possibly_damaging(0.786) TCGA-HD-A6I0-01 10 75286479 75286479 G A USP54 Missense_Mutation p.S707L 0.25 deleterious(0) possibly_damaging(0.527) TCGA-HD-A6I0-01 10 97117484 97117484 C T SORBS1 Missense_Mutation p.E678K 0.25 deleterious(0) probably_damaging(0.995) TCGA-HD-A6I0-01 11 124956177 124956177 T C SLC37A2 Intron 0.32 TCGA-HD-A6I0-01 11 36615351 36615351 C T RAG2 Missense_Mutation p.R123H 0.22 tolerated(0.29) probably_damaging(0.994) TCGA-HD-A6I0-01 11 46387882 46387882 G A DGKZ Missense_Mutation p.V26M 0.33 tolerated_low_confidence(0.07) benign(0.006) TCGA-HD-A6I0-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.12 deleterious(0) probably_damaging(0.992) TCGA-HD-A6I0-01 11 60702781 60702781 G A TMEM132A Missense_Mutation p.D633N 0.29 deleterious(0) probably_damaging(0.981) TCGA-HD-A6I0-01 11 85445750 85445750 C T SYTL2 Missense_Mutation p.A207T 0.21 tolerated(0.58) benign(0.03) TCGA-HD-A6I0-01 12 102591007 102591007 A G PARPBP 3'Flank 0.30 TCGA-HD-A6I0-01 12 107365207 107365207 G T C12orf23 3'UTR 0.23 TCGA-HD-A6I0-01 12 122862212 122862212 C T CLIP1 Silent p.K127K 0.16 TCGA-HD-A6I0-01 12 15669842 15669842 G A PTPRO Nonsense_Mutation p.W577* 0.21 TCGA-HD-A6I0-01 12 31540540 31540540 C A DENND5B Silent p.V1274V 0.22 TCGA-HD-A6I0-01 12 31542369 31542369 A T DENND5B Missense_Mutation p.I1177N 0.35 tolerated(0.54) benign(0.102) TCGA-HD-A6I0-01 12 330229 330229 C T SLC6A13 Missense_Mutation p.R565H 0.12 tolerated(0.21) benign(0.001) TCGA-HD-A6I0-01 12 5687656 5687656 G T ANO2 Missense_Mutation p.F754L 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-HD-A6I0-01 12 77242030 77242030 G A ZDHHC17 Missense_Mutation p.E509K 0.30 tolerated(0.82) benign(0.042) TCGA-HD-A6I0-01 12 96310926 96310926 C T CCDC38 Silent p.P95P 0.23 TCGA-HD-A6I0-01 13 113030772 113030772 C T SPACA7 Missense_Mutation p.R25W 0.53 tolerated(0.18) benign(0.003) TCGA-HD-A6I0-01 13 28877426 28877426 G T FLT1 Missense_Mutation p.H1299N 0.22 tolerated(0.06) benign(0.432) TCGA-HD-A6I0-01 13 70681494 70681494 T A KLHL1 Missense_Mutation p.Q113L 0.21 tolerated_low_confidence(0.67) benign(0.001) TCGA-HD-A6I0-01 14 23345211 23345211 G A LRP10 Missense_Mutation p.D352N 0.39 tolerated(1) benign(0) TCGA-HD-A6I0-01 14 33291632 33291632 G A AKAP6 Missense_Mutation p.R1538H 0.32 tolerated_low_confidence(0.24) benign(0.002) TCGA-HD-A6I0-01 14 68113731 68113731 G A ARG2 Silent p.L237L 0.21 TCGA-HD-A6I0-01 14 68113732 68113732 C T ARG2 Silent p.L238L 0.22 TCGA-HD-A6I0-01 14 75745804 75745804 T C FOS Missense_Mutation p.M40T 0.19 tolerated(0.15) possibly_damaging(0.731) TCGA-HD-A6I0-01 15 25479402 25479402 G A SNORD115-35 RNA 0.18 TCGA-HD-A6I0-01 15 25924598 25924598 C G ATP10A Missense_Mutation p.D1464H 0.46 deleterious_low_confidence(0) benign(0.422) TCGA-HD-A6I0-01 15 42052633 42052633 G A MGA Missense_Mutation p.R2435Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-HD-A6I0-01 15 45357482 45357482 G A SORD Missense_Mutation p.V147I 0.48 deleterious(0.04) benign(0.045) TCGA-HD-A6I0-01 15 66779609 66779609 G T MAP2K1 Missense_Mutation p.L313F 0.19 deleterious(0) probably_damaging(0.995) TCGA-HD-A6I0-01 15 85403074 85403074 C T ALPK3 Missense_Mutation p.R1547W 0.20 deleterious(0.01) probably_damaging(0.97) TCGA-HD-A6I0-01 16 30409623 30409623 G A ZNF48 Missense_Mutation p.R351H 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-HD-A6I0-01 16 30537766 30537766 G A ZNF768 5'UTR 0.22 TCGA-HD-A6I0-01 16 67333315 67333315 C T KCTD19 Missense_Mutation p.G313R 0.31 tolerated(0.77) benign(0.217) TCGA-HD-A6I0-01 16 87678390 87678390 C T JPH3 Silent p.S303S 0.21 TCGA-HD-A6I0-01 17 43531385 43531385 G A PLEKHM1 Silent p.D611D 0.32 TCGA-HD-A6I0-01 17 48669100 48669100 C A CACNA1G Missense_Mutation p.S880R 0.24 deleterious(0.01) probably_damaging(1) TCGA-HD-A6I0-01 17 71418542 71418542 C T SDK2 Silent p.V643V 0.28 TCGA-HD-A6I0-01 17 78286919 78286919 C T RNF213 Silent p.N921N 0.18 TCGA-HD-A6I0-01 17 7951872 7951872 G A ALOX15B Missense_Mutation p.V674I 0.23 tolerated(0.51) benign(0.034) TCGA-HD-A6I0-01 17 8077453 8077453 T C TMEM107 3'UTR 0.21 TCGA-HD-A6I0-01 18 2891051 2891051 C A EMILIN2 Missense_Mutation p.T309K 0.22 deleterious(0.04) possibly_damaging(0.632) TCGA-HD-A6I0-01 18 44560303 44560303 C T TCEB3B Missense_Mutation p.G445S 0.25 tolerated(0.22) possibly_damaging(0.591) TCGA-HD-A6I0-01 19 16770950 16770950 G A SMIM7 5'UTR 0.33 TCGA-HD-A6I0-01 19 46388200 46388200 T C IRF2BP1 Missense_Mutation p.Y278C 0.27 deleterious(0) probably_damaging(0.926) TCGA-HD-A6I0-01 19 46526290 46526290 C T PGLYRP1 5'UTR 0.35 TCGA-HD-A6I0-01 19 51875069 51875069 G A NKG7 Missense_Mutation p.H154Y 0.27 tolerated(0.26) benign(0) TCGA-HD-A6I0-01 19 53058397 53058397 C T ZNF808 Missense_Mutation p.T743M 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-HD-A6I0-01 19 57640887 57640887 C A USP29 Missense_Mutation p.Q282K 0.18 tolerated(1) benign(0.072) TCGA-HD-A6I0-01 1 110019530 110019530 C T SYPL2 Silent p.T129T 0.23 TCGA-HD-A6I0-01 1 111060949 111060949 G T KCNA10 Missense_Mutation p.P154Q 0.23 deleterious(0) probably_damaging(1) TCGA-HD-A6I0-01 1 117631445 117631445 G A TTF2 Missense_Mutation p.R728Q 0.24 tolerated(0.31) benign(0.037) TCGA-HD-A6I0-01 1 150117082 150117082 G A VPS45 3'UTR 0.20 TCGA-HD-A6I0-01 1 155205614 155205614 C T GBA Missense_Mutation p.G416S 0.29 deleterious(0.01) possibly_damaging(0.575) TCGA-HD-A6I0-01 1 179820453 179820453 G A TOR1AIP2 Missense_Mutation p.A27V 0.29 tolerated_low_confidence(0.08) benign(0.057) TCGA-HD-A6I0-01 1 26887287 26887288 - CT RPS6KA1 Frame_Shift_Ins p.E440Lfs*46 0.20 TCGA-HD-A6I0-01 1 26898043 26898043 G A RPS6KA1 Missense_Mutation p.R574Q 0.27 deleterious(0.02) benign(0.169) TCGA-HD-A6I0-01 1 27878340 27878340 C T AHDC1 Missense_Mutation p.R96H 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.715) TCGA-HD-A6I0-01 1 37282846 37282846 G A GRIK3 Missense_Mutation p.R636C 0.23 deleterious(0) probably_damaging(1) TCGA-HD-A6I0-01 1 53163987 53163990 CATG - COA7 Frame_Shift_Del p.M4Wfs*54 0.28 TCGA-HD-A6I0-01 1 68943612 68943612 T G DEPDC1 Missense_Mutation p.Y719S 0.30 deleterious(0) probably_damaging(0.934) TCGA-HD-A6I0-01 20 17610502 17610502 G A RRBP1 Silent p.A472A 0.20 TCGA-HD-A6I0-01 20 21687662 21687662 G A PAX1 Silent p.S291S 0.16 TCGA-HD-A6I0-01 20 40710554 40710554 G A PTPRT Missense_Mutation p.R1414C 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-HD-A6I0-01 22 32253484 32253484 C T DEPDC5 Missense_Mutation p.S1061L 0.40 tolerated(0.68) benign(0.006) TCGA-HD-A6I0-01 2 105892032 105892032 C T TGFBRAP1 Silent p.L550L 0.05 TCGA-HD-A6I0-01 2 233710572 233710572 C G GIGYF2 Missense_Mutation p.L1167V 0.32 unknown(0) TCGA-HD-A6I0-01 2 28634913 28634922 TAGCCCCGAG - FOSL2 Frame_Shift_Del p.I193Mfs*24 0.29 TCGA-HD-A6I0-01 2 33952259 33952259 C A AC009499.1 Intron 0.31 TCGA-HD-A6I0-01 2 37234241 37234241 C T HEATR5B Missense_Mutation p.A1577T 0.35 tolerated(0.54) benign(0.007) TCGA-HD-A6I0-01 3 134825395 134825395 G T EPHB1 Missense_Mutation p.R304L 0.24 tolerated(0.23) benign(0.023) TCGA-HD-A6I0-01 3 150321156 150321156 C T SELT Missense_Mutation p.L3F 0.32 tolerated_low_confidence(0.35) benign(0) TCGA-HD-A6I0-01 3 43122695 43122695 G A POMGNT2 Missense_Mutation p.R77C 0.31 deleterious(0) probably_damaging(0.993) TCGA-HD-A6I0-01 4 187629341 187629342 - TA FAT1 Frame_Shift_Ins p.R548Tfs*16 0.24 TCGA-HD-A6I0-01 4 44177049 44177049 T C KCTD8 Missense_Mutation p.K394E 0.33 deleterious(0.04) probably_damaging(0.956) TCGA-HD-A6I0-01 4 71346803 71346803 G A MUC7 Silent p.V114V 0.40 TCGA-HD-A6I0-01 4 73990667 73990667 G T ANKRD17 Missense_Mutation p.T1152K 0.32 possibly_damaging(0.684) TCGA-HD-A6I0-01 5 140236812 140236812 G A PCDHA10 Silent p.P393P 0.24 TCGA-HD-A6I0-01 6 102134198 102134198 C T GRIK2 Silent p.P307P 0.23 TCGA-HD-A6I0-01 6 26124444 26124444 A G HIST1H2AC 5'UTR 0.31 TCGA-HD-A6I0-01 6 35919265 35919265 G A SLC26A8 Silent p.A748A 0.18 TCGA-HD-A6I0-01 6 56482918 56482918 C A DST Intron 0.31 TCGA-HD-A6I0-01 7 131817922 131817922 G A PLXNA4 Silent p.S1825S 0.30 TCGA-HD-A6I0-01 7 141754631 141754631 G A MGAM Silent p.E1079E 0.29 TCGA-HD-A6I0-01 7 149484847 149484847 G C SSPO RNA 0.50 TCGA-HD-A6I0-01 7 26236221 26236221 C G HNRNPA2B1 Missense_Mutation p.R190T 0.29 deleterious(0.01) unknown(0) TCGA-HD-A6I0-01 7 56174161 56174161 G A CHCHD2 5'UTR 0.29 TCGA-HD-A6I0-01 7 94055131 94055131 G A COL1A2 Missense_Mutation p.V969M 0.28 unknown(0) TCGA-HD-A6I0-01 8 124359414 124359414 T C ATAD2 Silent p.Q710Q 0.36 TCGA-HD-A6I0-01 8 140630787 140630787 C T KCNK9 Missense_Mutation p.R280Q 0.24 tolerated(0.66) benign(0.001) TCGA-HD-A6I0-01 9 131596044 131596044 T C CCBL1 Missense_Mutation p.H395R 0.34 tolerated(0.11) benign(0.03) TCGA-HD-A6I0-01 9 131670684 131670684 A T LRRC8A Missense_Mutation p.D414V 0.16 deleterious(0) benign(0.059) TCGA-HD-A6I0-01 9 139412375 139412375 C T NOTCH1 Missense_Mutation p.E424K 0.30 deleterious(0.03) probably_damaging(0.995) TCGA-HD-A6I0-01 9 79319910 79319910 G A PRUNE2 Missense_Mutation p.A2427V 0.10 tolerated(0.23) benign(0.035) TCGA-HD-A6I0-01 X 17771493 17771493 G A SCML1 Missense_Mutation p.G324E 0.54 tolerated(1) benign(0.014) TCGA-IQ-7630-01 10 100003924 100003924 C T R3HCC1L 3'UTR 0.21 TCGA-IQ-7630-01 10 115804437 115804437 G A ADRB1 Silent p.V182V 0.35 TCGA-IQ-7630-01 10 21106596 21106596 C T NEBL Missense_Mutation p.R694Q 0.22 tolerated(0.57) benign(0.002) TCGA-IQ-7630-01 10 48390514 48390514 G A RBP3 Missense_Mutation p.R122C 0.29 deleterious(0.02) probably_damaging(0.993) TCGA-IQ-7630-01 10 74700977 74700977 G C PLA2G12B Missense_Mutation p.S139W 0.25 deleterious(0) probably_damaging(0.987) TCGA-IQ-7630-01 11 125315828 125315828 G C FEZ1 3'UTR 0.26 TCGA-IQ-7630-01 11 128781352 128781352 G A KCNJ5 Missense_Mutation p.V62M 0.29 deleterious(0) probably_damaging(1) TCGA-IQ-7630-01 11 14913703 14913703 C T CYP2R1 Missense_Mutation p.A17T 0.35 tolerated(0.11) unknown(0) TCGA-IQ-7630-01 11 22272376 22272376 C T ANO5 Missense_Mutation p.T368M 0.42 deleterious(0) probably_damaging(0.953) TCGA-IQ-7630-01 11 55433179 55433179 G T OR4C6 Missense_Mutation p.L179F 0.44 tolerated_low_confidence(0.05) possibly_damaging(0.651) TCGA-IQ-7630-01 11 57088123 57088123 A C TNKS1BP1 Missense_Mutation p.L53R 0.14 deleterious(0) probably_damaging(0.999) TCGA-IQ-7630-01 11 70332944 70332944 C T SHANK2 Missense_Mutation p.E1153K 0.27 tolerated(0.7) benign(0) TCGA-IQ-7630-01 11 71721849 71721849 G A NUMA1 Nonsense_Mutation p.Q1568* 0.24 TCGA-IQ-7630-01 12 104496888 104496888 C T HCFC2 Missense_Mutation p.T739I 0.06 deleterious(0.03) probably_damaging(0.975) TCGA-IQ-7630-01 12 14019155 14019155 G A GRIN2B 5'UTR 0.22 TCGA-IQ-7630-01 12 2566851 2566851 C T CACNA1C Missense_Mutation p.R246W 0.27 deleterious(0) probably_damaging(1) TCGA-IQ-7630-01 12 4705363 4705363 G A DYRK4 Missense_Mutation p.G111R 0.36 deleterious(0) probably_damaging(1) TCGA-IQ-7630-01 12 49427266 49427268 TGC - KMT2D In_Frame_Del p.Q3745del 0.30 TCGA-IQ-7630-01 12 53450797 53450797 G A TENC1 Silent p.G264G 0.16 TCGA-IQ-7630-01 12 54576249 54576249 G A SMUG1 Silent p.L148L 0.27 TCGA-IQ-7630-01 12 58143283 58143283 G A CDK4 Missense_Mutation p.L213F 0.26 deleterious(0.02) possibly_damaging(0.883) TCGA-IQ-7630-01 12 78583919 78583919 G A NAV3 Missense_Mutation p.E2049K 0.18 deleterious(0.01) possibly_damaging(0.842) TCGA-IQ-7630-01 13 29002024 29002024 C T FLT1 Missense_Mutation p.A381T 0.19 tolerated(0.3) benign(0.177) TCGA-IQ-7630-01 13 52864041 52864041 T C RP11-248G5.8 RNA 0.39 TCGA-IQ-7630-01 13 99378415 99378415 G A SLC15A1 Silent p.L69L 0.26 TCGA-IQ-7630-01 13 99378417 99378417 G C SLC15A1 Missense_Mutation p.L69V 0.26 deleterious(0) benign(0.408) TCGA-IQ-7630-01 14 105518369 105518369 G A GPR132 Silent p.N35N 0.24 TCGA-IQ-7630-01 14 106478357 106478357 G C IGHV4-4 Missense_Mutation p.S34W 0.38 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-IQ-7630-01 14 21820784 21820784 C T SUPT16H 3'UTR 0.27 TCGA-IQ-7630-01 14 21928533 21928533 C G RAB2B 3'UTR 0.30 TCGA-IQ-7630-01 14 24608771 24608771 C A EMC9 Missense_Mutation p.D110Y 0.26 deleterious(0.01) possibly_damaging(0.557) TCGA-IQ-7630-01 14 39716136 39716136 C T MIA2 Missense_Mutation p.L120F 0.20 tolerated(0.16) benign(0.272) TCGA-IQ-7630-01 14 50318366 50318366 G T NEMF Missense_Mutation p.T49K 0.06 deleterious(0) benign(0.281) TCGA-IQ-7630-01 14 64565540 64565540 G A SYNE2 Splice_Site p.X4127_splice 0.20 TCGA-IQ-7630-01 14 71209185 71209185 G A MAP3K9 Missense_Mutation p.L484F 0.27 deleterious(0) possibly_damaging(0.718) TCGA-IQ-7630-01 14 73720589 73720589 G T PAPLN Missense_Mutation p.G381W 0.25 deleterious(0) probably_damaging(0.999) TCGA-IQ-7630-01 14 74345930 74345930 C A PTGR2 Silent p.L217L 0.28 TCGA-IQ-7630-01 14 76967127 76967127 G A ESRRB 3'UTR 0.34 TCGA-IQ-7630-01 14 77872373 77872373 C G NOXRED1 Missense_Mutation p.S263T 0.21 tolerated(0.08) benign(0.018) TCGA-IQ-7630-01 14 90485752 90485752 C T TDP1 Missense_Mutation p.P545L 0.30 deleterious(0.02) probably_damaging(0.962) TCGA-IQ-7630-01 14 92347671 92347671 G A FBLN5 Silent p.I318I 0.23 TCGA-IQ-7630-01 14 92357591 92357591 A G FBLN5 Missense_Mutation p.L198P 0.06 deleterious(0) probably_damaging(1) TCGA-IQ-7630-01 14 99182522 99182522 C T C14orf177 5'UTR 0.38 TCGA-IQ-7630-01 15 25332880 25332880 A T SNORD116-20 RNA 0.25 TCGA-IQ-7630-01 15 42434752 42434752 C T PLA2G4F Missense_Mutation p.R768H 0.19 tolerated(0.11) benign(0.001) TCGA-IQ-7630-01 15 52664414 52664414 G C MYO5A Silent p.L908L 0.33 TCGA-IQ-7630-01 15 65555626 65555626 G A PARP16 Silent p.T184T 0.24 TCGA-IQ-7630-01 15 82512532 82512532 C T EFTUD1 Missense_Mutation p.R444H 0.23 tolerated(0.56) benign(0.416) TCGA-IQ-7630-01 16 20348717 20348717 C A UMOD Missense_Mutation p.G546C 0.32 deleterious(0) probably_damaging(0.99) TCGA-IQ-7630-01 16 67979117 67979117 T C SLC12A4 Silent p.Q1015Q 0.23 TCGA-IQ-7630-01 16 71482652 71482652 C T ZNF23 Missense_Mutation p.G426R 0.23 deleterious(0.05) possibly_damaging(0.639) TCGA-IQ-7630-01 17 39740519 39740521 TTC - KRT14 In_Frame_Del p.K251del 0.26 TCGA-IQ-7630-01 17 40940718 40940718 G C WNK4 Missense_Mutation p.R687T 0.24 deleterious(0) unknown(0) TCGA-IQ-7630-01 17 45822604 45822604 G A TBX21 Missense_Mutation p.E494K 0.27 tolerated(0.12) probably_damaging(0.981) TCGA-IQ-7630-01 17 62080239 62080239 C T ICAM2 Silent p.S232S 0.20 TCGA-IQ-7630-01 17 6942181 6942181 G A SLC16A13 Missense_Mutation p.G352R 0.22 deleterious(0) probably_damaging(0.999) TCGA-IQ-7630-01 17 72915896 72915896 C G USH1G Silent p.R345R 0.16 TCGA-IQ-7630-01 17 72915913 72915913 C T USH1G Missense_Mutation p.G340R 0.17 deleterious(0.03) benign(0.021) TCGA-IQ-7630-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.13 deleterious(0) probably_damaging(1) TCGA-IQ-7630-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.38 deleterious(0) probably_damaging(1) TCGA-IQ-7630-01 17 7800529 7800529 G A CHD3 Silent p.P671P 0.26 TCGA-IQ-7630-01 17 78211342 78211342 G A SLC26A11 Missense_Mutation p.V312M 0.39 deleterious(0) possibly_damaging(0.531) TCGA-IQ-7630-01 19 10124179 10124179 C T RDH8 Silent p.A22A 0.32 TCGA-IQ-7630-01 19 14992152 14992152 C G OR7A17 Missense_Mutation p.D6H 0.41 tolerated_low_confidence(0.06) possibly_damaging(0.538) TCGA-IQ-7630-01 19 2210646 2210646 G A DOT1L Silent p.A381A 0.20 TCGA-IQ-7630-01 19 35757379 35757379 C A LSR Missense_Mutation p.P347H 0.43 deleterious(0) possibly_damaging(0.855) TCGA-IQ-7630-01 19 39521762 39521762 C T FBXO27 Nonsense_Mutation p.W160* 0.40 TCGA-IQ-7630-01 19 4338788 4338788 G A STAP2 5'UTR 0.31 TCGA-IQ-7630-01 19 44131798 44131798 C T CADM4 Missense_Mutation p.R70H 0.23 deleterious(0) probably_damaging(0.999) TCGA-IQ-7630-01 19 46842835 46842835 G A HIF3A Missense_Mutation p.G656R 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-IQ-7630-01 19 47423751 47423751 G A ARHGAP35 Missense_Mutation p.G607S 0.38 deleterious(0.04) probably_damaging(1) TCGA-IQ-7630-01 19 47823721 47823721 G A C5AR1 Silent p.T229T 0.31 TCGA-IQ-7630-01 19 48806034 48806034 C T CCDC114 Missense_Mutation p.R349H 0.32 tolerated(0.08) benign(0.087) TCGA-IQ-7630-01 19 49436959 49436959 G C DHDH 5'UTR 0.26 TCGA-IQ-7630-01 19 49564963 49564963 C G NTF4 Missense_Mutation p.D98H 0.29 deleterious(0) probably_damaging(0.998) TCGA-IQ-7630-01 19 50461907 50461907 G A SIGLEC11 Silent p.S452S 0.18 TCGA-IQ-7630-01 19 56321143 56321143 C A NLRP11 Missense_Mutation p.R278M 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-IQ-7630-01 19 5789493 5789493 C T DUS3L Missense_Mutation p.G209S 0.36 tolerated(0.7) benign(0.004) TCGA-IQ-7630-01 19 57955756 57955756 G A ZNF749 Missense_Mutation p.E414K 0.28 tolerated(0.05) benign(0.001) TCGA-IQ-7630-01 1 156031179 156031179 A T RAB25 5'UTR 0.30 TCGA-IQ-7630-01 1 157509002 157509002 C T FCRL5 Missense_Mutation p.A426T 0.07 tolerated(0.49) benign(0.07) TCGA-IQ-7630-01 1 19018401 19018401 G A PAX7 Missense_Mutation p.R247H 0.33 deleterious(0) possibly_damaging(0.884) TCGA-IQ-7630-01 1 197889131 197889131 C T LHX9 Silent p.P68P 0.27 TCGA-IQ-7630-01 1 200017721 200017721 G T NR5A2 Silent p.T295T 0.31 TCGA-IQ-7630-01 1 212798505 212798505 G A FAM71A Missense_Mutation p.E96K 0.10 deleterious(0) benign(0.016) TCGA-IQ-7630-01 1 22191363 22191363 C T HSPG2 Silent p.P1533P 0.25 TCGA-IQ-7630-01 1 22205082 22205082 C A HSPG2 Missense_Mutation p.R849L 0.19 probably_damaging(0.987) TCGA-IQ-7630-01 1 226420174 226420174 C T LIN9 3'UTR 0.19 TCGA-IQ-7630-01 1 27436232 27436232 C - SLC9A1 Frame_Shift_Del p.E284Nfs*13 0.26 TCGA-IQ-7630-01 1 47689752 47689752 C T TAL1 Silent p.P155P 0.25 TCGA-IQ-7630-01 1 59002204 59002204 G T OMA1 Nonsense_Mutation p.S237* 0.28 TCGA-IQ-7630-01 20 18123437 18123437 C G CSRP2BP Missense_Mutation p.Q45E 0.10 tolerated_low_confidence(0.05) probably_damaging(0.968) TCGA-IQ-7630-01 20 24646189 24646189 G A SYNDIG1 3'UTR 0.18 TCGA-IQ-7630-01 20 31876618 31876618 C T BPIFB1 Missense_Mutation p.R63W 0.19 deleterious(0) probably_damaging(0.912) TCGA-IQ-7630-01 20 43930045 43930045 G A MATN4 Missense_Mutation p.H228Y 0.40 possibly_damaging(0.856) TCGA-IQ-7630-01 20 49354499 49354499 G A PARD6B Missense_Mutation p.V58I 0.49 tolerated(0.06) benign(0.234) TCGA-IQ-7630-01 20 57415178 57415178 G A RP4-806M20.3 5'Flank 0.51 TCGA-IQ-7630-01 20 57430002 57430002 G A GNAS Missense_Mutation p.R561H 0.56 tolerated_low_confidence(0.4) benign(0.003) TCGA-IQ-7630-01 20 61870794 61870794 G T BIRC7 Missense_Mutation p.R245L 0.49 tolerated(0.06) benign(0.177) TCGA-IQ-7630-01 20 9510395 9510395 C T LAMP5 Silent p.H257H 0.22 TCGA-IQ-7630-01 21 41561106 41561106 C T DSCAM Missense_Mutation p.E806K 0.31 tolerated(0.23) benign(0.044) TCGA-IQ-7630-01 22 30061031 30061031 C G NF2 Nonsense_Mutation p.S288* 0.17 TCGA-IQ-7630-01 22 32179890 32179890 C T DEPDC5 Intron 0.33 TCGA-IQ-7630-01 22 36708123 36708123 C T MYH9 Missense_Mutation p.D567N 0.47 possibly_damaging(0.776) TCGA-IQ-7630-01 2 1271203 1271203 G C SNTG2 Missense_Mutation p.E382Q 0.41 tolerated(0.55) benign(0.024) TCGA-IQ-7630-01 2 128384586 128384586 G A MYO7B Missense_Mutation p.V1392M 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-IQ-7630-01 2 136575003 136575003 T C LCT Missense_Mutation p.T539A 0.24 deleterious(0) probably_damaging(1) TCGA-IQ-7630-01 2 166627124 166627124 G T GALNT3 Missense_Mutation p.F29L 0.31 tolerated(0.63) benign(0.001) TCGA-IQ-7630-01 2 228563678 228563678 G A SLC19A3 Silent p.S251S 0.35 TCGA-IQ-7630-01 2 234775957 234775957 G C MSL3P1 RNA 0.36 TCGA-IQ-7630-01 2 239147619 239147619 G A HES6 Missense_Mutation p.P175L 0.32 tolerated(0.1) benign(0.015) TCGA-IQ-7630-01 2 25054533 25054533 G A ADCY3 Missense_Mutation p.R685W 0.16 deleterious(0) probably_damaging(0.953) TCGA-IQ-7630-01 2 33036234 33036234 G A TTC27 Silent p.L714L 0.20 TCGA-IQ-7630-01 2 71591185 71591185 G T ZNF638 Missense_Mutation p.R507L 0.35 deleterious(0) probably_damaging(0.998) TCGA-IQ-7630-01 2 71755438 71755438 C T DYSF Silent p.A429A 0.27 TCGA-IQ-7630-01 2 99013652 99013652 G T CNGA3 Silent p.G673G 0.18 TCGA-IQ-7630-01 3 127703084 127703084 C T KBTBD12 Missense_Mutation p.P612L 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-IQ-7630-01 3 142511763 142511763 G A TRPC1 Missense_Mutation p.R512H 0.24 deleterious(0) probably_damaging(0.999) TCGA-IQ-7630-01 3 152173353 152173353 C T MBNL1 Intron 0.23 TCGA-IQ-7630-01 3 169801877 169801877 T C GPR160 Silent p.N39N 0.33 TCGA-IQ-7630-01 3 183756386 183756386 C T HTR3D Missense_Mutation p.P370L 0.21 tolerated(0.98) benign(0.004) TCGA-IQ-7630-01 3 37523001 37523001 C T ITGA9 Silent p.I149I 0.13 TCGA-IQ-7630-01 3 58145386 58145386 G A FLNB Missense_Mutation p.E2363K 0.11 deleterious(0.03) benign(0.26) TCGA-IQ-7630-01 3 58395289 58395289 C T PXK Nonsense_Mutation p.Q447* 0.12 TCGA-IQ-7630-01 3 58516345 58516345 G A ACOX2 Silent p.Y280Y 0.30 TCGA-IQ-7630-01 4 130030466 130030466 G A C4orf33 Missense_Mutation p.G83R 0.24 deleterious(0.02) probably_damaging(1) TCGA-IQ-7630-01 4 22737769 22737769 G T GBA3 Missense_Mutation p.R75L 0.24 deleterious(0.03) probably_damaging(0.924) TCGA-IQ-7630-01 4 22820363 22820363 C G GBA3 Silent p.V409V 0.37 TCGA-IQ-7630-01 4 2307028 2307028 G A ZFYVE28 Missense_Mutation p.R347C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-IQ-7630-01 5 11346651 11346651 C G CTNND2 Missense_Mutation p.Q487H 0.15 deleterious(0.01) benign(0.03) TCGA-IQ-7630-01 5 122337107 122337107 G C SNX24 Missense_Mutation p.D118H 0.15 deleterious(0.04) benign(0.417) TCGA-IQ-7630-01 5 140216300 140216300 C T PCDHA7 Nonsense_Mutation p.Q778* 0.64 TCGA-IQ-7630-01 5 140801398 140801398 G A PCDHGA11 Missense_Mutation p.D202N 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-IQ-7630-01 5 34924964 34924964 G A BRIX1 Missense_Mutation p.D226N 0.12 tolerated(0.08) benign(0.259) TCGA-IQ-7630-01 5 86675667 86675667 C T RASA1 Missense_Mutation p.P868L 0.41 tolerated(0.44) probably_damaging(0.917) TCGA-IQ-7630-01 5 86675668 86675668 G T RASA1 Splice_Site p.X868_splice 0.41 TCGA-IQ-7630-01 6 105606599 105606599 G A POPDC3 Nonsense_Mutation p.R208* 0.17 TCGA-IQ-7630-01 6 107780282 107780282 G C PDSS2 Missense_Mutation p.R70G 0.22 deleterious(0) probably_damaging(0.998) TCGA-IQ-7630-01 6 108723212 108723212 A G LACE1 Missense_Mutation p.N254S 0.20 deleterious(0.02) possibly_damaging(0.644) TCGA-IQ-7630-01 6 129714240 129714240 G C LAMA2 Missense_Mutation p.R1762P 0.22 deleterious(0.03) possibly_damaging(0.886) TCGA-IQ-7630-01 6 130425615 130425615 G A L3MBTL3 Missense_Mutation p.R594H 0.32 tolerated(0.11) possibly_damaging(0.8) TCGA-IQ-7630-01 6 24437398 24437398 G A GPLD1 Missense_Mutation p.R714C 0.24 deleterious(0) probably_damaging(0.939) TCGA-IQ-7630-01 6 27792123 27792123 C T HIST1H4J Missense_Mutation p.T74I 0.21 deleterious(0.03) probably_damaging(0.956) TCGA-IQ-7630-01 6 38825334 38825334 C G DNAH8 Nonsense_Mutation p.S1708* 0.23 TCGA-IQ-7630-01 6 43152214 43152214 G A CUL9 Missense_Mutation p.E56K 0.33 tolerated(0.46) benign(0.045) TCGA-IQ-7630-01 7 100391590 100391590 G A ZAN Intron 0.23 TCGA-IQ-7630-01 7 100686824 100686824 C T MUC17 Missense_Mutation p.R4043C 0.26 benign(0.006) TCGA-IQ-7630-01 7 101840038 101840038 C T CUX1 Silent p.H460H 0.30 TCGA-IQ-7630-01 7 119915562 119915562 C T KCND2 Silent p.L292L 0.34 TCGA-IQ-7630-01 7 127255554 127255554 G C PAX4 Silent p.L7L 0.15 TCGA-IQ-7630-01 7 139107106 139107106 C G LUC7L2 3'UTR 0.30 TCGA-IQ-7630-01 7 141445354 141445354 G T SSBP1 Missense_Mutation p.V125L 0.28 tolerated(0.3) benign(0.049) TCGA-IQ-7630-01 7 149430329 149430329 G A KRBA1 Silent p.P761P 0.25 TCGA-IQ-7630-01 7 149462766 149462766 C T ZNF467 Silent p.T275T 0.29 TCGA-IQ-7630-01 7 23731200 23731200 G C FAM221A Missense_Mutation p.D208H 0.32 deleterious(0) probably_damaging(0.995) TCGA-IQ-7630-01 7 55233012 55233012 G A EGFR Missense_Mutation p.G588S 0.36 deleterious(0.03) probably_damaging(0.993) TCGA-IQ-7630-01 8 100729474 100729474 G A VPS13B Missense_Mutation p.R2202H 0.44 tolerated(0.08) possibly_damaging(0.522) TCGA-IQ-7630-01 8 133848943 133848943 G A PHF20L1 Missense_Mutation p.E690K 0.16 deleterious(0) possibly_damaging(0.843) TCGA-IQ-7630-01 8 144919579 144919579 C T NRBP2 Missense_Mutation p.R359Q 0.31 deleterious(0.04) benign(0.354) TCGA-IQ-7630-01 8 61178601 61178601 C T CA8 Silent p.S100S 0.26 TCGA-IQ-7630-01 8 99440583 99440583 C T KCNS2 Missense_Mutation p.R126C 0.35 deleterious(0.04) probably_damaging(0.99) TCGA-IQ-7630-01 9 129458759 129458759 C T LMX1B 3'UTR 0.09 TCGA-IQ-7630-01 9 35377547 35377547 C T UNC13B Silent p.I557I 0.05 TCGA-IQ-7630-01 9 35724888 35724888 C T TLN1 Silent p.T99T 0.09 TCGA-IQ-7630-01 9 74305092 74305092 G A TMEM2 Missense_Mutation p.P1256L 0.23 tolerated(0.34) benign(0.197) TCGA-IQ-7630-01 9 79840885 79840885 G A VPS13A Missense_Mutation p.R402K 0.19 deleterious(0) probably_damaging(0.997) TCGA-IQ-7630-01 X 32328384 32328384 G A DMD Missense_Mutation p.R1978C 0.62 benign(0.056) TCGA-IQ-7630-01 X 71800893 71800893 C T PHKA1 Missense_Mutation p.V1211M 0.47 deleterious(0) possibly_damaging(0.674) TCGA-IQ-7631-01 10 121156223 121156223 C T GRK5 Missense_Mutation p.T93I 0.46 deleterious(0.03) possibly_damaging(0.874) TCGA-IQ-7631-01 10 75673068 75673068 G A PLAU Missense_Mutation p.R130Q 0.42 tolerated(0.1) benign(0.105) TCGA-IQ-7631-01 10 88259577 88259580 TCTT - WAPAL Frame_Shift_Del p.K474Qfs*50 0.36 TCGA-IQ-7631-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.35 deleterious(0.02) probably_damaging(0.989) TCGA-IQ-7631-01 14 106692136 106692136 G A IGHV3-21 5'UTR 0.42 TCGA-IQ-7631-01 15 58974499 58974499 C T ADAM10 Missense_Mutation p.R74Q 0.26 deleterious(0.01) benign(0.327) TCGA-IQ-7631-01 15 65682659 65682659 C A IGDCC4 Nonsense_Mutation p.G748* 0.09 TCGA-IQ-7631-01 16 3828020 3828020 C G CREBBP Missense_Mutation p.R702T 0.18 probably_damaging(0.968) TCGA-IQ-7631-01 16 57734141 57734141 G A CCDC135 Missense_Mutation p.D155N 0.25 tolerated(0.09) benign(0.249) TCGA-IQ-7631-01 16 7383041 7383041 C T RBFOX1 Silent p.G13G 0.26 TCGA-IQ-7631-01 17 10204957 10204957 C T MYH13 Missense_Mutation p.A1911T 0.35 deleterious(0) benign(0.046) TCGA-IQ-7631-01 18 76754998 76754998 C T SALL3 Missense_Mutation p.R1003W 0.28 deleterious(0) probably_damaging(0.986) TCGA-IQ-7631-01 19 55396849 55396849 C T FCAR Silent p.D91D 0.26 TCGA-IQ-7631-01 1 206822243 206822243 C G DYRK3 Missense_Mutation p.A567G 0.36 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-IQ-7631-01 1 217955575 217955575 G A SPATA17 Silent p.T261T 0.33 TCGA-IQ-7631-01 1 227968341 227968341 C T SNAP47 Silent p.D454D 0.40 TCGA-IQ-7631-01 1 33236052 33236052 C T KIAA1522 Silent p.T424T 0.40 TCGA-IQ-7631-01 1 7812556 7812556 C T CAMTA1 Nonsense_Mutation p.R1641* 0.50 TCGA-IQ-7631-01 20 31571672 31571672 G A SUN5 Silent p.R356R 0.34 TCGA-IQ-7631-01 2 220432968 220432968 A C OBSL1 Missense_Mutation p.V364G 0.35 deleterious(0) probably_damaging(0.976) TCGA-IQ-7631-01 2 39283893 39283893 G A SOS1 Missense_Mutation p.H154Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-IQ-7631-01 2 74746713 74746713 C T DQX1 Silent p.Q592Q 0.37 TCGA-IQ-7631-01 4 25363860 25363860 G A ZCCHC4 Silent p.P382P 0.31 TCGA-IQ-7631-01 5 179765551 179765551 G T GFPT2 Silent p.I19I 0.46 TCGA-IQ-7631-01 6 31930806 31930806 C T SKIV2L Silent p.H447H 0.35 TCGA-IQ-7631-01 7 100779013 100779013 G A SERPINE1 Missense_Mutation p.V340I 0.22 deleterious(0.04) benign(0.128) TCGA-IQ-7631-01 7 146741040 146741040 C T CNTNAP2 Silent p.H148H 0.24 TCGA-IQ-7631-01 7 149545305 149545305 A C ZNF862 Silent p.I241I 0.35 TCGA-IQ-7631-01 7 65617404 65617404 A G CRCP 3'UTR 0.54 TCGA-IQ-7631-01 7 98547146 98547146 G A TRRAP Missense_Mutation p.R1625H 0.38 benign(0) TCGA-IQ-7631-01 8 12950234 12950234 G A DLC1 Silent p.S1209S 0.33 TCGA-IQ-7631-01 8 144652142 144652142 C T MROH6 Silent p.T379T 0.34 TCGA-IQ-7631-01 9 91041469 91041469 C T SPIN1 Silent p.F5F 0.32 TCGA-IQ-7631-01 X 101908801 101908801 G T GPRASP1 5'UTR 0.43 TCGA-IQ-7631-01 X 123538975 123538975 G A TENM1 Missense_Mutation p.S1766L 0.36 deleterious(0.02) benign(0.029) TCGA-IQ-7631-01 X 123556319 123556319 T A TENM1 Missense_Mutation p.K1425M 0.41 deleterious(0) possibly_damaging(0.827) TCGA-IQ-7631-01 X 34150181 34150181 C T FAM47A Missense_Mutation p.R72H 0.31 tolerated(0.18) benign(0.025) TCGA-IQ-7631-01 X 34150220 34150220 C T FAM47A Missense_Mutation p.R59H 0.41 tolerated(0.06) probably_damaging(0.984) TCGA-IQ-7631-01 X 41088917 41088919 ACA - USP9X In_Frame_Del p.N2441del 0.45 TCGA-IQ-7631-01 X 49031984 49031984 T C PRICKLE3 3'UTR 0.44 TCGA-IQ-7631-01 X 70347218 70347218 G A MED12 Missense_Mutation p.R961Q 0.29 benign(0.227) TCGA-IQ-7632-01 10 63450358 63450358 A G C10orf107 Silent p.E89E 0.12 TCGA-IQ-7632-01 11 116703638 116703638 G T APOC3 3'UTR 0.23 TCGA-IQ-7632-01 11 55339695 55339695 G A OR4C16 Missense_Mutation p.R31H 0.07 deleterious(0.02) benign(0.008) TCGA-IQ-7632-01 11 62606655 62606655 C T WDR74 Missense_Mutation p.G75D 0.08 deleterious(0.03) possibly_damaging(0.558) TCGA-IQ-7632-01 11 7439283 7439283 G A SYT9 Missense_Mutation p.E421K 0.08 deleterious(0) probably_damaging(1) TCGA-IQ-7632-01 11 94911920 94911920 T G SESN3 Missense_Mutation p.D337A 0.13 deleterious(0) probably_damaging(1) TCGA-IQ-7632-01 12 22408274 22408274 C T ST8SIA1 Missense_Mutation p.G144D 0.09 deleterious(0) probably_damaging(0.997) TCGA-IQ-7632-01 12 49445626 49445626 C A KMT2D Nonsense_Mutation p.E614* 0.15 TCGA-IQ-7632-01 12 72070612 72070612 G A THAP2 Silent p.R137R 0.08 TCGA-IQ-7632-01 13 23914846 23914846 C G SACS Missense_Mutation p.D1057H 0.04 possibly_damaging(0.642) TCGA-IQ-7632-01 14 59930628 59930628 C A GPR135 Silent p.G439G 0.36 TCGA-IQ-7632-01 14 70444647 70444647 A G SMOC1 Missense_Mutation p.D164G 0.09 tolerated(0.08) possibly_damaging(0.775) TCGA-IQ-7632-01 16 1397985 1397985 C T BAIAP3 Missense_Mutation p.T1074M 0.12 deleterious(0) probably_damaging(0.998) TCGA-IQ-7632-01 16 23695252 23695252 G A PLK1 Missense_Mutation p.R293H 0.05 deleterious(0) probably_damaging(1) TCGA-IQ-7632-01 16 58583721 58583721 C G CNOT1 Missense_Mutation p.E1142Q 0.06 deleterious(0) probably_damaging(0.946) TCGA-IQ-7632-01 16 72828433 72828433 G A ZFHX3 Silent p.C2716C 0.21 TCGA-IQ-7632-01 17 39967445 39967445 T C LEPREL4 Missense_Mutation p.Y185C 0.10 deleterious(0) probably_damaging(0.989) TCGA-IQ-7632-01 17 48761081 48761082 GA - ABCC3 Frame_Shift_Del p.D1308Pfs*38 0.14 TCGA-IQ-7632-01 18 13645527 13645527 C T LDLRAD4 Silent p.G264G 0.12 TCGA-IQ-7632-01 18 44559510 44559510 C T TCEB3B Missense_Mutation p.R709Q 0.07 tolerated(0.58) possibly_damaging(0.602) TCGA-IQ-7632-01 19 14268749 14268749 G A LPHN1 Missense_Mutation p.T832M 0.07 deleterious(0) probably_damaging(0.997) TCGA-IQ-7632-01 19 51532503 51532503 G T KLK12 Intron 0.10 TCGA-IQ-7632-01 1 117624536 117624536 A T TTF2 Nonsense_Mutation p.K624* 0.08 TCGA-IQ-7632-01 1 12887574 12887574 C G PRAMEF11 Missense_Mutation p.V95L 0.05 tolerated(0.42) benign(0.311) TCGA-IQ-7632-01 1 152188874 152188874 T C HRNR Missense_Mutation p.Y1744C 0.12 unknown(0) TCGA-IQ-7632-01 1 152280551 152280551 C A FLG Missense_Mutation p.A2271S 0.08 benign(0.364) TCGA-IQ-7632-01 1 169390949 169390949 A C CCDC181 Silent p.P240P 0.13 TCGA-IQ-7632-01 1 206628236 206628236 C T SRGAP2 Silent p.V705V 0.10 TCGA-IQ-7632-01 20 30897727 30897727 G A KIF3B Silent p.T49T 0.08 TCGA-IQ-7632-01 20 31622901 31622901 T C BPIFB6 Missense_Mutation p.M156T 0.16 deleterious(0.01) benign(0.079) TCGA-IQ-7632-01 20 43585027 43585027 G A TOMM34 Missense_Mutation p.S76L 0.07 tolerated(0.06) benign(0.014) TCGA-IQ-7632-01 20 58471566 58471566 T A SYCP2 Missense_Mutation p.K474N 0.15 deleterious(0) probably_damaging(0.957) TCGA-IQ-7632-01 22 17072504 17072504 C G CCT8L2 Missense_Mutation p.V313L 0.09 tolerated(0.15) benign(0.001) TCGA-IQ-7632-01 22 32548591 32548591 C T C22orf42 Silent p.A110A 0.10 TCGA-IQ-7632-01 3 14526472 14526472 C T SLC6A6 Missense_Mutation p.A607V 0.12 tolerated_low_confidence(0.32) benign(0.001) TCGA-IQ-7632-01 3 195517753 195517753 C T MUC4 Missense_Mutation p.G233E 0.16 unknown(0) TCGA-IQ-7632-01 3 51743211 51743211 G A GRM2 Missense_Mutation p.R71H 0.08 deleterious(0.01) benign(0.059) TCGA-IQ-7632-01 3 69153744 69153744 G T ARL6IP5 Missense_Mutation p.G175V 0.21 tolerated(0.17) benign(0.007) TCGA-IQ-7632-01 4 151509256 151509256 C T LRBA Missense_Mutation p.E2103K 0.10 deleterious(0) possibly_damaging(0.82) TCGA-IQ-7632-01 4 72412192 72412192 G A SLC4A4 Silent p.K856K 0.10 TCGA-IQ-7632-01 5 137727180 137727180 A G KDM3B Missense_Mutation p.N620S 0.10 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-IQ-7632-01 5 140751490 140751490 G A PCDHGB3 Missense_Mutation p.R510Q 0.16 tolerated(1) benign(0.001) TCGA-IQ-7632-01 5 176951739 176951739 G A FAM193B Silent p.N581N 0.33 TCGA-IQ-7632-01 5 54922346 54922346 G T SLC38A9 Missense_Mutation p.N554K 0.11 deleterious(0) probably_damaging(0.997) TCGA-IQ-7632-01 5 55110956 55110956 C T DDX4 Missense_Mutation p.S648L 0.05 deleterious(0.02) benign(0.409) TCGA-IQ-7632-01 5 63256816 63256816 G A HTR1A Missense_Mutation p.A244V 0.10 tolerated(0.54) benign(0.001) TCGA-IQ-7632-01 5 95746485 95746485 T A PCSK1 Missense_Mutation p.Q363L 0.11 deleterious(0.03) possibly_damaging(0.464) TCGA-IQ-7632-01 6 126080842 126080842 T G HEY2 Missense_Mutation p.I303S 0.08 tolerated(0.19) benign(0.029) TCGA-IQ-7632-01 6 27783137 27783137 G A HIST1H2BM Missense_Mutation p.E106K 0.10 deleterious_low_confidence(0.01) benign(0.157) TCGA-IQ-7632-01 6 28871857 28871857 G C TRIM27 Missense_Mutation p.T511S 0.12 tolerated_low_confidence(0.24) benign(0.011) TCGA-IQ-7632-01 6 30888896 30888896 C T VARS2 Nonsense_Mutation p.Q542* 0.12 TCGA-IQ-7632-01 6 31832499 31832499 C A SLC44A4 Silent p.G647G 0.08 TCGA-IQ-7632-01 6 38840791 38840791 C T DNAH8 Silent p.R2232R 0.13 TCGA-IQ-7632-01 6 96971059 96971059 T C UFL1 Silent p.L39L 0.05 TCGA-IQ-7632-01 7 91570433 91570435 AGA - AKAP9 In_Frame_Del p.K9del 0.10 TCGA-IQ-7632-01 7 99707619 99707619 C T TAF6 Silent p.L449L 0.10 TCGA-IQ-7632-01 8 130874554 130874554 C G FAM49B Missense_Mutation p.K74N 0.08 tolerated(0.5) benign(0.009) TCGA-IQ-7632-01 8 72958792 72958792 T - TRPA1 Frame_Shift_Del p.T673Hfs*23 0.12 TCGA-IQ-7632-01 9 100127991 100127991 G T CCDC180 Missense_Mutation p.E1383D 0.23 tolerated(0.17) benign(0.388) TCGA-IQ-7632-01 9 37015073 37015073 C A PAX5 Missense_Mutation p.A111S 0.04 tolerated(0.06) probably_damaging(1) TCGA-IQ-7632-01 X 135405364 135405364 T A GPR112 Missense_Mutation p.N166K 0.05 tolerated(0.33) benign(0.114) TCGA-IQ-7632-01 X 153594747 153594747 G A FLNA Missense_Mutation p.A386V 0.11 tolerated(0.13) possibly_damaging(0.697) TCGA-IQ-7632-01 X 17768243 17768243 C G SCML1 Missense_Mutation p.T178S 0.17 tolerated(1) benign(0.008) TCGA-IQ-7632-01 X 79932674 79932674 A G BRWD3 Missense_Mutation p.S1615P 0.03 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-IQ-7632-01 X 91132437 91132437 A G PCDH11X Missense_Mutation p.T400A 0.06 deleterious(0.01) probably_damaging(0.959) TCGA-IQ-A61E-01 10 102005556 102005556 G A CWF19L1 Missense_Mutation p.P322S 0.10 tolerated(0.22) benign(0.023) TCGA-IQ-A61E-01 10 103607279 103607279 G A C10orf76 3'UTR 0.11 TCGA-IQ-A61E-01 10 13629058 13629058 G A PRPF18 5'UTR 0.17 TCGA-IQ-A61E-01 10 37447507 37447507 C G ANKRD30A Missense_Mutation p.F575L 0.11 tolerated(0.73) possibly_damaging(0.483) TCGA-IQ-A61E-01 10 48371065 48371065 C T ZNF488 Missense_Mutation p.S178L 0.20 tolerated(0.1) benign(0) TCGA-IQ-A61E-01 10 48371155 48371155 C A ZNF488 Nonsense_Mutation p.S208* 0.15 TCGA-IQ-A61E-01 10 51581333 51581333 T C NCOA4 Silent p.I161I 0.05 TCGA-IQ-A61E-01 10 79781930 79781930 G A POLR3A Silent p.I286I 0.29 TCGA-IQ-A61E-01 10 89503153 89503153 C T PAPSS2 Missense_Mutation p.R416C 0.21 deleterious(0) probably_damaging(1) TCGA-IQ-A61E-01 10 91532581 91532581 G A KIF20B Missense_Mutation p.G1753D 0.19 deleterious(0) probably_damaging(1) TCGA-IQ-A61E-01 11 111590619 111590619 G A SIK2 Missense_Mutation p.E463K 0.10 deleterious(0.01) possibly_damaging(0.512) TCGA-IQ-A61E-01 11 111624280 111624280 G C PPP2R1B Missense_Mutation p.Q351E 0.22 tolerated(0.26) benign(0.006) TCGA-IQ-A61E-01 11 111942456 111942456 G C PIH1D2 Missense_Mutation p.I68M 0.29 deleterious(0) probably_damaging(0.988) TCGA-IQ-A61E-01 11 118925334 118925334 C T HYOU1 Missense_Mutation p.E184K 0.12 deleterious(0) probably_damaging(0.975) TCGA-IQ-A61E-01 11 118942470 118942470 C T VPS11 Silent p.F266F 0.12 TCGA-IQ-A61E-01 11 12313752 12313752 C T MICALCL Missense_Mutation p.L13F 0.10 tolerated_low_confidence(0.58) unknown(0) TCGA-IQ-A61E-01 11 123777563 123777563 C G OR8D4 Missense_Mutation p.S142C 0.13 tolerated(0.13) benign(0.089) TCGA-IQ-A61E-01 11 12785897 12785897 G A TEAD1 Missense_Mutation p.E40K 0.28 deleterious(0) probably_damaging(0.963) TCGA-IQ-A61E-01 11 47296258 47296258 G A MADD Missense_Mutation p.M69I 0.11 tolerated(0.31) benign(0.016) TCGA-IQ-A61E-01 11 4870167 4870167 C A OR51S1 Missense_Mutation p.G91V 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-IQ-A61E-01 11 534289 534289 C T HRAS Missense_Mutation p.G12S 0.18 deleterious(0.02) possibly_damaging(0.525) TCGA-IQ-A61E-01 11 59189489 59189489 G C OR5A2 Missense_Mutation p.S313C 0.20 tolerated(0.09) possibly_damaging(0.863) TCGA-IQ-A61E-01 11 64054480 64054480 G A GPR137 Missense_Mutation p.R192Q 0.13 deleterious(0.02) benign(0.105) TCGA-IQ-A61E-01 11 64575070 64575070 G A MEN1 Missense_Mutation p.S251F 0.24 deleterious(0) probably_damaging(0.989) TCGA-IQ-A61E-01 11 8933201 8933201 C T AKIP1 Missense_Mutation p.R69C 0.23 deleterious(0.01) benign(0.139) TCGA-IQ-A61E-01 11 9451226 9451226 G T IPO7 Nonsense_Mutation p.E533* 0.12 TCGA-IQ-A61E-01 12 105505022 105505022 C T KIAA1033 Missense_Mutation p.L61F 0.08 tolerated(0.08) possibly_damaging(0.746) TCGA-IQ-A61E-01 12 106633325 106633325 C G CKAP4 Missense_Mutation p.R429P 0.06 tolerated(0.06) possibly_damaging(0.838) TCGA-IQ-A61E-01 12 130185208 130185208 T G TMEM132D Silent p.R39R 0.17 TCGA-IQ-A61E-01 12 2602398 2602398 C T CACNA1C Missense_Mutation p.T320M 0.27 deleterious(0) possibly_damaging(0.54) TCGA-IQ-A61E-01 12 319191 319191 G T SLC6A12 5'UTR 0.31 TCGA-IQ-A61E-01 12 52565209 52565209 G A KRT80 Silent p.F444F 0.28 TCGA-IQ-A61E-01 12 75892422 75892422 C G KRR1 3'UTR 0.29 TCGA-IQ-A61E-01 12 75892515 75892515 C G KRR1 3'UTR 0.14 TCGA-IQ-A61E-01 13 52603415 52603415 C A UTP14C Missense_Mutation p.P159T 0.20 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61E-01 14 106552681 106552681 C T IGHV3-9 Intron 0.55 TCGA-IQ-A61E-01 14 19553701 19553701 G T POTEG Missense_Mutation p.R95S 0.07 tolerated_low_confidence(0.14) possibly_damaging(0.901) TCGA-IQ-A61E-01 14 20824776 20824776 G A PARP2 Missense_Mutation p.M432I 0.10 deleterious(0.03) benign(0.008) TCGA-IQ-A61E-01 14 23829039 23829039 G C EFS Missense_Mutation p.I216M 0.24 deleterious(0.03) benign(0.09) TCGA-IQ-A61E-01 14 23829051 23829051 C T EFS Silent p.P212P 0.05 TCGA-IQ-A61E-01 14 23829056 23829056 C T EFS Missense_Mutation p.E211K 0.25 tolerated(0.12) probably_damaging(0.965) TCGA-IQ-A61E-01 14 51237162 51237162 C G NIN Missense_Mutation p.E460Q 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-IQ-A61E-01 14 51381517 51381517 C T PYGL Missense_Mutation p.E474K 0.28 tolerated(0.15) benign(0.062) TCGA-IQ-A61E-01 14 51382160 51382160 C T PYGL Missense_Mutation p.E433K 0.35 deleterious(0.03) benign(0.095) TCGA-IQ-A61E-01 14 51382669 51382669 C T PYGL Silent p.K371K 0.26 TCGA-IQ-A61E-01 14 69350896 69350896 C G ACTN1 Missense_Mutation p.E542Q 0.23 deleterious(0.04) possibly_damaging(0.713) TCGA-IQ-A61E-01 14 73572952 73572952 G C RBM25 Missense_Mutation p.E476Q 0.10 benign(0.403) TCGA-IQ-A61E-01 14 77294657 77294657 C T C14orf166B Nonsense_Mutation p.R38* 0.29 TCGA-IQ-A61E-01 14 94847215 94847215 C T SERPINA1 Missense_Mutation p.D304N 0.33 tolerated(0.47) benign(0) TCGA-IQ-A61E-01 15 40954538 40954538 C G CASC5 3'UTR 0.25 TCGA-IQ-A61E-01 15 43350596 43350596 G A UBR1 Silent p.F375F 0.09 TCGA-IQ-A61E-01 15 43653870 43653870 G C ZSCAN29 Missense_Mutation p.L654V 0.17 tolerated(0.49) benign(0.025) TCGA-IQ-A61E-01 15 74748953 74748953 G A UBL7 Nonsense_Mutation p.Q82* 0.28 TCGA-IQ-A61E-01 15 75042739 75042739 G A CYP1A2 Silent p.V220V 0.27 TCGA-IQ-A61E-01 15 75705314 75705314 G C SIN3A Missense_Mutation p.F182L 0.15 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61E-01 15 79291063 79291063 G A RASGRF1 Nonsense_Mutation p.Q967* 0.05 TCGA-IQ-A61E-01 15 90610895 90610895 C T ZNF710 Nonsense_Mutation p.R176* 0.07 TCGA-IQ-A61E-01 16 20337672 20337672 C T GP2 Missense_Mutation p.A28T 0.12 tolerated(1) benign(0.006) TCGA-IQ-A61E-01 16 21133286 21133286 T G DNAH3 Missense_Mutation p.N522H 0.20 deleterious(0.05) benign(0.227) TCGA-IQ-A61E-01 16 58552696 58552696 G T SETD6 Missense_Mutation p.R395S 0.26 tolerated(0.56) benign(0.009) TCGA-IQ-A61E-01 16 68732246 68732246 G C CDH3 Missense_Mutation p.E811D 0.12 tolerated(0.6) benign(0.137) TCGA-IQ-A61E-01 16 81078318 81078318 G A ATMIN Missense_Mutation p.E739K 0.08 deleterious(0) probably_damaging(0.987) TCGA-IQ-A61E-01 16 81348778 81348778 C T GAN Silent p.L20L 0.25 TCGA-IQ-A61E-01 16 81348783 81348783 C G GAN Missense_Mutation p.S22C 0.25 deleterious(0.01) possibly_damaging(0.494) TCGA-IQ-A61E-01 17 10399804 10399804 C T MYH1 Silent p.K1573K 0.22 TCGA-IQ-A61E-01 17 11536006 11536006 G C DNAH9 Missense_Mutation p.E541Q 0.06 possibly_damaging(0.601) TCGA-IQ-A61E-01 17 16120651 16120651 G A PIGL Silent p.L37L 0.12 TCGA-IQ-A61E-01 17 16526543 16526543 C G ZNF624 Missense_Mutation p.E553Q 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-IQ-A61E-01 17 17754216 17754216 C T TOM1L2 Silent p.R443R 0.20 TCGA-IQ-A61E-01 17 38855809 38855809 C G KRT24 Missense_Mutation p.Q416H 0.29 deleterious(0) probably_damaging(0.994) TCGA-IQ-A61E-01 17 43522835 43522835 C A PLEKHM1 Splice_Site p.X946_splice 0.11 TCGA-IQ-A61E-01 17 57290741 57290741 G C SMG8 Missense_Mutation p.D853H 0.13 tolerated(0.13) probably_damaging(0.979) TCGA-IQ-A61E-01 17 60814545 60814545 C G MARCH10 Missense_Mutation p.Q228H 0.11 deleterious(0.04) benign(0.06) TCGA-IQ-A61E-01 17 73221840 73221840 G A NUP85 Silent p.L301L 0.13 TCGA-IQ-A61E-01 17 73887344 73887344 C T TRIM65 Missense_Mutation p.R357H 0.06 tolerated(0.56) benign(0.003) TCGA-IQ-A61E-01 17 7573010 7573010 T A TP53 Splice_Site p.X367_splice 0.47 TCGA-IQ-A61E-01 17 78321214 78321214 C T RNF213 Nonsense_Mutation p.Q3027* 0.08 TCGA-IQ-A61E-01 17 7842900 7842900 G C CNTROB Missense_Mutation p.E333Q 0.28 tolerated(0.1) probably_damaging(0.999) TCGA-IQ-A61E-01 17 7843416 7843416 G A CNTROB Silent p.E389E 0.19 TCGA-IQ-A61E-01 17 79880643 79880643 G T MAFG Silent p.S109S 0.17 TCGA-IQ-A61E-01 17 9774114 9774114 C T GLP2R Silent p.L369L 0.04 TCGA-IQ-A61E-01 18 21758086 21758086 C T OSBPL1A Missense_Mutation p.G662R 0.09 deleterious(0) probably_damaging(0.997) TCGA-IQ-A61E-01 18 28662356 28662356 C A DSC2 Missense_Mutation p.V371L 0.18 deleterious(0.01) possibly_damaging(0.856) TCGA-IQ-A61E-01 18 28662371 28662371 C T DSC2 Missense_Mutation p.E366K 0.18 deleterious(0) probably_damaging(1) TCGA-IQ-A61E-01 18 28663006 28663006 C T DSC2 Silent p.L321L 0.27 TCGA-IQ-A61E-01 18 346752 346752 G T COLEC12 Silent p.L290L 0.06 TCGA-IQ-A61E-01 18 47017915 47017915 C T RPL17 Silent p.E9E 0.19 TCGA-IQ-A61E-01 18 56892771 56892771 G A GRP Missense_Mutation p.E63K 0.22 tolerated(0.05) benign(0.221) TCGA-IQ-A61E-01 19 10224616 10224616 C T P2RY11 Silent p.F109F 0.05 TCGA-IQ-A61E-01 19 10477149 10477149 G C TYK2 Silent p.L191L 0.14 TCGA-IQ-A61E-01 19 10597144 10597144 G A KEAP1 3'UTR 0.17 TCGA-IQ-A61E-01 19 1466157 1466157 C T APC2 Missense_Mutation p.R953C 0.10 benign(0.443) TCGA-IQ-A61E-01 19 15349902 15349904 CTT - BRD4 In_Frame_Del p.K1250del 0.25 TCGA-IQ-A61E-01 19 16536088 16536088 C T EPS15L1 Missense_Mutation p.V200M 0.12 deleterious(0) probably_damaging(0.996) TCGA-IQ-A61E-01 19 17212828 17212828 C G MYO9B Missense_Mutation p.Q101E 0.32 tolerated(0.17) benign(0.411) TCGA-IQ-A61E-01 19 33600794 33600794 C G GPATCH1 Missense_Mutation p.S486C 0.07 deleterious(0.02) possibly_damaging(0.57) TCGA-IQ-A61E-01 19 39406858 39406858 C G SARS2 Intron 0.27 TCGA-IQ-A61E-01 19 43523178 43523178 G C PSG11 Missense_Mutation p.I151M 0.24 deleterious(0) probably_damaging(0.995) TCGA-IQ-A61E-01 19 46112805 46112805 G A EML2 3'Flank 0.13 TCGA-IQ-A61E-01 19 52249193 52249193 C A FPR1 3'UTR 0.28 TCGA-IQ-A61E-01 19 52249448 52249448 C T FPR1 Missense_Mutation p.R267K 0.26 tolerated(0.3) benign(0.021) TCGA-IQ-A61E-01 19 56539108 56539108 C T NLRP5 Silent p.A503A 0.32 TCGA-IQ-A61E-01 19 57335718 57335718 G C PEG3 Silent p.L102L 0.21 TCGA-IQ-A61E-01 19 7985294 7985294 C G SNAPC2 Missense_Mutation p.L15V 0.16 tolerated(0.52) benign(0.095) TCGA-IQ-A61E-01 19 9075892 9075892 T C MUC16 Missense_Mutation p.R3852G 0.22 unknown(0) TCGA-IQ-A61E-01 1 103461562 103461562 C T COL11A1 Missense_Mutation p.G760S 0.18 unknown(0) TCGA-IQ-A61E-01 1 110737359 110737359 C T SLC6A17 Silent p.I486I 0.19 TCGA-IQ-A61E-01 1 12328839 12328839 C G VPS13D Silent p.L626L 0.08 TCGA-IQ-A61E-01 1 12557583 12557583 G A VPS13D Missense_Mutation p.R4231H 0.11 probably_damaging(0.984) TCGA-IQ-A61E-01 1 151196743 151196743 C G PIP5K1A Silent p.P36P 0.06 TCGA-IQ-A61E-01 1 152279460 152279460 G A FLG Silent p.S2634S 0.16 TCGA-IQ-A61E-01 1 163138103 163138103 C G RGS5 Missense_Mutation p.G34R 0.07 tolerated(0.45) benign(0.036) TCGA-IQ-A61E-01 1 16462170 16462170 C T EPHA2 Missense_Mutation p.E470K 0.14 deleterious(0.01) benign(0.44) TCGA-IQ-A61E-01 1 200811126 200811126 A C CAMSAP2 Missense_Mutation p.N311T 0.24 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61E-01 1 226075256 226075256 G A LEFTY1 Missense_Mutation p.R194W 0.29 deleterious(0) possibly_damaging(0.825) TCGA-IQ-A61E-01 1 26513909 26513909 C T CNKSR1 Nonsense_Mutation p.Q464* 0.19 TCGA-IQ-A61E-01 1 40703751 40703751 C T RLF Missense_Mutation p.P1126L 0.35 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61E-01 1 44595173 44595173 C T KLF17 Missense_Mutation p.A77V 0.27 tolerated(0.07) benign(0.091) TCGA-IQ-A61E-01 1 52248291 52248291 G C OSBPL9 Missense_Mutation p.E507Q 0.15 deleterious(0) probably_damaging(0.987) TCGA-IQ-A61E-01 1 59131245 59131245 C T MYSM1 Missense_Mutation p.R697Q 0.09 tolerated(0.35) benign(0.006) TCGA-IQ-A61E-01 1 64097370 64097370 G A PGM1 Missense_Mutation p.R218K 0.19 tolerated(1) benign(0.137) TCGA-IQ-A61E-01 1 68620827 68620827 C T WLS Silent p.K205K 0.22 TCGA-IQ-A61E-01 1 94496668 94496668 G C ABCA4 Silent p.L1379L 0.12 TCGA-IQ-A61E-01 1 99771685 99771685 C T LPPR4 Nonsense_Mutation p.Q471* 0.19 TCGA-IQ-A61E-01 20 13753256 13753256 A T ESF1 Nonsense_Mutation p.Y385* 0.24 TCGA-IQ-A61E-01 20 16348101 16348101 C T KIF16B Missense_Mutation p.R1290Q 0.10 deleterious_low_confidence(0.03) benign(0) TCGA-IQ-A61E-01 20 16496215 16496215 G C KIF16B Nonsense_Mutation p.S109* 0.25 TCGA-IQ-A61E-01 20 30915388 30915388 C G KIF3B Nonsense_Mutation p.S631* 0.10 TCGA-IQ-A61E-01 20 49208987 49208987 G A FAM65C Missense_Mutation p.T820I 0.20 deleterious(0.04) possibly_damaging(0.596) TCGA-IQ-A61E-01 20 62577836 62577836 C T UCKL1 Missense_Mutation p.G92S 0.26 deleterious(0) possibly_damaging(0.904) TCGA-IQ-A61E-01 20 62729928 62729928 G T OPRL1 Missense_Mutation p.A297S 0.28 tolerated(0.49) benign(0.009) TCGA-IQ-A61E-01 21 38072022 38072022 C T SIM2 5'UTR 0.32 TCGA-IQ-A61E-01 21 39671750 39671750 G C KCNJ15 Missense_Mutation p.Q189H 0.17 tolerated(0.94) benign(0.002) TCGA-IQ-A61E-01 21 46888624 46888624 C G COL18A1 Nonsense_Mutation p.S372* 0.31 TCGA-IQ-A61E-01 22 19963263 19963263 T C ARVCF Missense_Mutation p.M636V 0.18 tolerated(0.44) benign(0) TCGA-IQ-A61E-01 22 36708154 36708154 G A MYH9 Silent p.F556F 0.10 TCGA-IQ-A61E-01 22 37870703 37870703 G A MFNG Silent p.F220F 0.06 TCGA-IQ-A61E-01 2 113404462 113404462 G A SLC20A1 Silent p.V19V 0.19 TCGA-IQ-A61E-01 2 163302533 163302533 C T KCNH7 Missense_Mutation p.D517N 0.12 deleterious(0) benign(0.31) TCGA-IQ-A61E-01 2 178936621 178936621 G A PDE11A Silent p.L182L 0.04 TCGA-IQ-A61E-01 2 204009827 204009827 A T NBEAL1 Missense_Mutation p.M1721L 0.21 deleterious(0.04) benign(0.016) TCGA-IQ-A61E-01 2 231379821 231379821 G C SP100 Intron 0.39 TCGA-IQ-A61E-01 2 231380190 231380190 G C SP100 Intron 0.45 TCGA-IQ-A61E-01 2 231380429 231380429 G C SP100 Intron 0.29 TCGA-IQ-A61E-01 2 234601679 234601679 G T UGT1A6 Missense_Mutation p.R10I 0.07 tolerated(0.18) benign(0.235) TCGA-IQ-A61E-01 2 26702488 26702488 C T OTOF Missense_Mutation p.R649Q 0.24 tolerated(0.26) benign(0.004) TCGA-IQ-A61E-01 2 27527838 27527838 C T TRIM54 Silent p.S217S 0.22 TCGA-IQ-A61E-01 2 30142880 30142880 G C ALK Missense_Mutation p.L216V 0.12 tolerated_low_confidence(0.06) benign(0.079) TCGA-IQ-A61E-01 2 64083475 64083475 C G UGP2 Missense_Mutation p.Q19E 0.18 tolerated(1) benign(0.001) TCGA-IQ-A61E-01 2 70486522 70486522 C T PCYOX1 Missense_Mutation p.S48L 0.29 deleterious(0) probably_damaging(0.914) TCGA-IQ-A61E-01 2 70903955 70903955 G A ADD2 Silent p.S522S 0.29 TCGA-IQ-A61E-01 2 99651803 99651803 C G TSGA10 Missense_Mutation p.V502L 0.11 tolerated(0.29) possibly_damaging(0.487) TCGA-IQ-A61E-01 3 10089632 10089632 C T FANCD2 Missense_Mutation p.S437L 0.04 tolerated(0.35) benign(0.013) TCGA-IQ-A61E-01 3 108773716 108773716 C T MORC1 Missense_Mutation p.V397M 0.10 deleterious(0) probably_damaging(0.967) TCGA-IQ-A61E-01 3 111316966 111316966 G C CD96 Splice_Site p.X286_splice 0.41 TCGA-IQ-A61E-01 3 121973189 121973189 C G CASR Silent p.L51L 0.12 TCGA-IQ-A61E-01 3 125824636 125824636 C T ALDH1L1 Silent p.T872T 0.06 TCGA-IQ-A61E-01 3 130743861 130743861 C G ASTE1 Missense_Mutation p.R97T 0.17 deleterious(0.02) possibly_damaging(0.872) TCGA-IQ-A61E-01 3 141162830 141162830 C T ZBTB38 Missense_Mutation p.H534Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-IQ-A61E-01 3 158262165 158262165 G C RSRC1 3'UTR 0.42 TCGA-IQ-A61E-01 3 160253595 160253595 C T KPNA4 Splice_Site p.X68_splice 0.15 TCGA-IQ-A61E-01 3 173997144 173997144 C A NLGN1 Silent p.T451T 0.26 TCGA-IQ-A61E-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-IQ-A61E-01 3 183217409 183217409 G A KLHL6 Silent p.C372C 0.10 TCGA-IQ-A61E-01 3 183858347 183858347 G A EIF2B5 Missense_Mutation p.D329N 0.10 tolerated(0.13) benign(0.008) TCGA-IQ-A61E-01 3 196736529 196736529 C T MFI2 Silent p.Q495Q 0.07 TCGA-IQ-A61E-01 3 42728005 42728005 G A KLHL40 Missense_Mutation p.E299K 0.25 tolerated(0.07) benign(0.386) TCGA-IQ-A61E-01 4 164247687 164247687 G A NPY1R Missense_Mutation p.S7F 0.32 tolerated(0.71) benign(0) TCGA-IQ-A61E-01 4 187540420 187540426 AATGACA - FAT1 Frame_Shift_Del p.F2438Lfs*18 0.39 TCGA-IQ-A61E-01 4 25677805 25677805 T C SLC34A2 Missense_Mutation p.Y503H 0.16 deleterious(0) probably_damaging(1) TCGA-IQ-A61E-01 4 3446393 3446393 G C HGFAC Silent p.L258L 0.27 TCGA-IQ-A61E-01 4 40428064 40428064 G A RBM47 Missense_Mutation p.P547S 0.24 deleterious_low_confidence(0.02) benign(0.298) TCGA-IQ-A61E-01 4 77096978 77096978 C T SCARB2 Missense_Mutation p.E264K 0.28 deleterious(0.03) possibly_damaging(0.759) TCGA-IQ-A61E-01 5 112337274 112337274 G C DCP2 Missense_Mutation p.D237H 0.13 deleterious(0.03) possibly_damaging(0.853) TCGA-IQ-A61E-01 5 13719060 13719060 G A DNAH5 Nonsense_Mutation p.Q4144* 0.32 TCGA-IQ-A61E-01 5 140531209 140531209 C T PCDHB6 Silent p.F457F 0.09 TCGA-IQ-A61E-01 5 150029889 150029889 C G SYNPO Missense_Mutation p.F928L 0.15 deleterious(0.02) probably_damaging(0.987) TCGA-IQ-A61E-01 5 167957251 167957251 G A FBLL1 Missense_Mutation p.D248N 0.17 deleterious(0.02) probably_damaging(0.955) TCGA-IQ-A61E-01 5 170720931 170720931 G A RANBP17 Silent p.R996R 0.22 TCGA-IQ-A61E-01 5 33637755 33637755 C T ADAMTS12 Silent p.Q605Q 0.09 TCGA-IQ-A61E-01 5 63257481 63257481 G A HTR1A Silent p.G22G 0.34 TCGA-IQ-A61E-01 5 65349483 65349483 G A ERBB2IP Silent p.E779E 0.21 TCGA-IQ-A61E-01 5 76331456 76331456 C G AGGF1 Missense_Mutation p.S135C 0.18 deleterious(0.04) possibly_damaging(0.599) TCGA-IQ-A61E-01 5 96320874 96320874 C A LNPEP Silent p.I317I 0.12 TCGA-IQ-A61E-01 6 10704772 10704772 G C PAK1IP1 Missense_Mutation p.E177Q 0.43 tolerated(0.06) benign(0.265) TCGA-IQ-A61E-01 6 13273222 13273222 G T TBC1D7 Intron 0.64 TCGA-IQ-A61E-01 6 145157645 145157645 C A UTRN Missense_Mutation p.Q3345K 0.33 deleterious(0) probably_damaging(0.913) TCGA-IQ-A61E-01 6 151331049 151331049 A T MTHFD1L Missense_Mutation p.L740F 0.13 deleterious(0) probably_damaging(0.988) TCGA-IQ-A61E-01 6 27860654 27860654 C A HIST1H2AM Nonsense_Mutation p.E92* 0.05 TCGA-IQ-A61E-01 6 29555692 29555692 C T OR2H2 5'UTR 0.54 TCGA-IQ-A61E-01 6 31728591 31728591 C A MSH5 Missense_Mutation p.S646Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-IQ-A61E-01 6 4070112 4070112 G C FAM217A Missense_Mutation p.I115M 0.06 deleterious(0) benign(0.319) TCGA-IQ-A61E-01 6 42573562 42573562 G T UBR2 Nonsense_Mutation p.E256* 0.21 TCGA-IQ-A61E-01 6 43006377 43006377 G C CUL7 Silent p.L1582L 0.08 TCGA-IQ-A61E-01 6 47221044 47221044 C T TNFRSF21 Missense_Mutation p.R486Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61E-01 6 74161325 74161325 G A MB21D1 Silent p.L194L 0.36 TCGA-IQ-A61E-01 6 86333818 86333818 C T SYNCRIP Missense_Mutation p.E227K 0.06 deleterious(0.02) possibly_damaging(0.902) TCGA-IQ-A61E-01 6 88331187 88331187 G A ORC3 Missense_Mutation p.R368H 0.27 tolerated(0.09) benign(0.045) TCGA-IQ-A61E-01 6 93969138 93969138 C T EPHA7 Missense_Mutation p.A620T 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-IQ-A61E-01 7 142326894 142326894 G T TRBV19 Missense_Mutation p.L64F 0.29 deleterious(0) probably_damaging(0.925) TCGA-IQ-A61E-01 7 142964718 142964718 G A GSTK1 Silent p.E199E 0.18 TCGA-IQ-A61E-01 7 150752371 150752371 G A CDK5 Silent p.I191I 0.23 TCGA-IQ-A61E-01 7 37988620 37988620 G T EPDR1 Nonsense_Mutation p.E150* 0.08 TCGA-IQ-A61E-01 7 88423875 88423875 G T C7orf62 Missense_Mutation p.Q128K 0.23 tolerated(0.64) benign(0) TCGA-IQ-A61E-01 8 121457497 121457497 C G MRPL13 5'UTR 0.35 TCGA-IQ-A61E-01 8 143425798 143425798 C T TSNARE1 Missense_Mutation p.E92K 0.31 deleterious_low_confidence(0.02) benign(0.095) TCGA-IQ-A61E-01 8 144996545 144996545 C T PLEC Missense_Mutation p.E2619K 0.14 benign(0.223) TCGA-IQ-A61E-01 8 145160601 145160601 G C MAF1 Missense_Mutation p.E5D 0.14 tolerated(0.07) possibly_damaging(0.485) TCGA-IQ-A61E-01 8 145160607 145160607 G A MAF1 Silent p.S7S 0.13 TCGA-IQ-A61E-01 8 145694699 145694699 C G KIFC2 Missense_Mutation p.Q387E 0.22 tolerated(0.12) benign(0.08) TCGA-IQ-A61E-01 8 145730447 145730447 G A GPT Missense_Mutation p.R143H 0.19 deleterious(0) probably_damaging(1) TCGA-IQ-A61E-01 8 17579328 17579328 G A MTUS1 Intron 0.08 TCGA-IQ-A61E-01 8 33370218 33370218 C T TTI2 5'UTR 0.38 TCGA-IQ-A61E-01 8 56436091 56436091 G C XKR4 Missense_Mutation p.E420Q 0.11 tolerated(0.07) probably_damaging(0.995) TCGA-IQ-A61E-01 8 87552514 87552514 G A CPNE3 Silent p.K195K 0.08 TCGA-IQ-A61E-01 9 104324544 104324544 C T RNF20 Missense_Mutation p.P923L 0.31 deleterious(0) probably_damaging(0.99) TCGA-IQ-A61E-01 9 111656254 111656254 A T IKBKAP Nonsense_Mutation p.Y943* 0.13 TCGA-IQ-A61E-01 9 128002577 128002577 C G HSPA5 Missense_Mutation p.K122N 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.799) TCGA-IQ-A61E-01 9 130493006 130493006 G A TTC16 Silent p.S648S 0.30 TCGA-IQ-A61E-01 9 130941370 130941370 C T CIZ1 Silent p.Q372Q 0.51 TCGA-IQ-A61E-01 9 133799753 133799753 G A FIBCD1 Missense_Mutation p.H195Y 0.23 deleterious(0.02) benign(0.058) TCGA-IQ-A61E-01 9 139402529 139402546 GGTGCGTGTTGCCCGCGT TGTG NOTCH1 Frame_Shift_Del p.D1124Afs*15 0.40 TCGA-IQ-A61E-01 9 140059606 140059606 G C GRIN1 Intron 0.13 TCGA-IQ-A61E-01 9 79465381 79465381 C T PRUNE2 Silent p.A114A 0.09 TCGA-IQ-A61E-01 X 114869218 114869218 C G PLS3 Missense_Mutation p.S203C 0.09 deleterious(0) probably_damaging(1) TCGA-IQ-A61E-01 X 118753951 118753951 G A SEPT6 Intron 0.16 TCGA-IQ-A61E-01 X 120181976 120181976 C A GLUD2 Nonsense_Mutation p.C146* 0.23 TCGA-IQ-A61E-01 X 122599615 122599615 C T GRIA3 Silent p.C805C 0.12 TCGA-IQ-A61E-01 X 124029892 124029892 C T TENM1 Missense_Mutation p.R139Q 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IQ-A61E-01 X 129519308 129519308 A G GPR119 Silent p.G38G 0.28 TCGA-IQ-A61E-01 X 140995785 140995785 C G MAGEC1 Missense_Mutation p.S865R 0.06 deleterious_low_confidence(0) unknown(0) TCGA-IQ-A61E-01 X 3240601 3240601 T C MXRA5 Missense_Mutation p.H1042R 0.13 tolerated(0.21) benign(0) TCGA-IQ-A61E-01 X 40534570 40534570 C T MED14 Missense_Mutation p.R975K 0.21 deleterious(0.05) benign(0.288) TCGA-IQ-A61E-01 X 49958758 49958758 C G AKAP4 Missense_Mutation p.Q202H 0.13 deleterious(0.03) possibly_damaging(0.885) TCGA-IQ-A61E-01 X 51487557 51487557 G A GSPT2 Missense_Mutation p.E279K 0.12 deleterious(0.04) benign(0.314) TCGA-IQ-A61E-01 X 55102484 55102484 C A PAGE2B Missense_Mutation p.H4N 0.09 tolerated(0.08) possibly_damaging(0.449) TCGA-IQ-A61E-01 X 55513641 55513641 C T USP51 Missense_Mutation p.E578K 0.27 deleterious(0.03) benign(0.022) TCGA-IQ-A61E-01 X 69672598 69672598 G C DLG3 Intron 0.07 TCGA-IQ-A61E-01 X 70524841 70524841 C G ITGB1BP2 Silent p.V281V 0.32 TCGA-IQ-A61E-01 X 83724252 83724252 G T HDX Missense_Mutation p.A160E 0.21 tolerated(0.09) possibly_damaging(0.844) TCGA-IQ-A61E-01 X 91873367 91873367 C T PCDH11X Silent p.L1158L 0.22 TCGA-IQ-A61G-01 10 104309846 104309846 G T SUFU Missense_Mutation p.R146L 0.31 deleterious(0) probably_damaging(0.977) TCGA-IQ-A61G-01 10 126448978 126448978 T C METTL10 3'UTR 0.56 TCGA-IQ-A61G-01 10 55582950 55582950 T A PCDH15 Missense_Mutation p.K1514N 0.35 tolerated_low_confidence(1) benign(0.001) TCGA-IQ-A61G-01 10 76360239 76360239 A G ADK Missense_Mutation p.I289V 0.35 tolerated(0.61) benign(0.006) TCGA-IQ-A61G-01 10 79629035 79629035 T C AL391421.1 3'UTR 0.39 TCGA-IQ-A61G-01 10 83635273 83635273 G C NRG3 Silent p.V59V 0.42 TCGA-IQ-A61G-01 11 1216384 1216384 G A MUC5AC RNA 0.08 TCGA-IQ-A61G-01 11 1266600 1266600 G A MUC5B Silent p.P2830P 0.31 TCGA-IQ-A61G-01 11 55702954 55702954 C A OR5I1 Missense_Mutation p.R308I 0.26 tolerated(0.1) benign(0.021) TCGA-IQ-A61G-01 11 56949990 56949990 G A LRRC55 Missense_Mutation p.R208Q 0.21 tolerated(1) benign(0.008) TCGA-IQ-A61G-01 11 61026510 61026510 T C VWCE Silent p.P835P 0.38 TCGA-IQ-A61G-01 11 62384203 62384203 G T B3GAT3 Silent p.G228G 0.20 TCGA-IQ-A61G-01 11 67431139 67431139 C T ALDH3B2 Missense_Mutation p.G323R 0.14 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61G-01 11 69954473 69954473 G A ANO1 Silent p.L254L 0.08 TCGA-IQ-A61G-01 12 100601474 100601474 G A ACTR6 Missense_Mutation p.E97K 0.38 deleterious(0) possibly_damaging(0.791) TCGA-IQ-A61G-01 12 113553483 113553483 C T RASAL1 Silent p.G320G 0.43 TCGA-IQ-A61G-01 12 113826348 113826348 A T PLBD2 Missense_Mutation p.S563C 0.26 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61G-01 12 119583252 119583252 G T SRRM4 Nonsense_Mutation p.G280* 0.26 TCGA-IQ-A61G-01 12 121970759 121970759 A T KDM2B Missense_Mutation p.C295S 0.53 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61G-01 12 30872091 30872091 A C CAPRIN2 Intron 0.11 TCGA-IQ-A61G-01 12 50189159 50189159 A T NCKAP5L Silent p.P828P 0.25 TCGA-IQ-A61G-01 12 51566196 51566196 C - TFCP2 Frame_Shift_Del p.A4Lfs*2 0.27 TCGA-IQ-A61G-01 12 53069019 53069019 G A KRT1 Silent p.S631S 0.24 TCGA-IQ-A61G-01 12 95927582 95927582 A G USP44 Missense_Mutation p.W151R 0.29 tolerated(0.08) benign(0.056) TCGA-IQ-A61G-01 13 38164636 38164636 A T POSTN Missense_Mutation p.L105Q 0.68 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61G-01 13 58207394 58207394 C A PCDH17 Missense_Mutation p.D238E 0.22 deleterious(0) probably_damaging(0.997) TCGA-IQ-A61G-01 13 98829181 98829181 C T RNF113B Missense_Mutation p.G104R 0.39 deleterious(0.01) probably_damaging(0.954) TCGA-IQ-A61G-01 14 20444508 20444508 A T OR4K15 Silent p.P277P 0.25 TCGA-IQ-A61G-01 14 21789467 21789467 A G RPGRIP1 Missense_Mutation p.N506S 0.41 tolerated(1) benign(0.004) TCGA-IQ-A61G-01 14 24529927 24529927 G A LRRC16B Missense_Mutation p.A718T 0.29 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61G-01 14 36192435 36192435 A T RALGAPA1 Missense_Mutation p.N634K 0.25 tolerated(0.13) possibly_damaging(0.716) TCGA-IQ-A61G-01 14 59112257 59112257 T C DACT1 Missense_Mutation p.C306R 0.60 deleterious(0.01) benign(0.089) TCGA-IQ-A61G-01 14 69521673 69521673 C T DCAF5 Missense_Mutation p.R577H 0.08 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IQ-A61G-01 14 70925552 70925552 T A ADAM21 Missense_Mutation p.C446S 0.25 deleterious(0) probably_damaging(1) TCGA-IQ-A61G-01 14 92920295 92920295 T A SLC24A4 Missense_Mutation p.I311N 0.14 deleterious(0.02) benign(0.158) TCGA-IQ-A61G-01 14 94155053 94155053 T C UNC79 Missense_Mutation p.F2180L 0.25 tolerated(1) probably_damaging(0.99) TCGA-IQ-A61G-01 14 94929634 94929634 C A SERPINA9 Splice_Site p.X369_splice 0.54 TCGA-IQ-A61G-01 14 96792231 96792231 T C ATG2B Missense_Mutation p.D731G 0.53 deleterious(0.02) probably_damaging(0.971) TCGA-IQ-A61G-01 15 22947044 22947044 G A CYFIP1 Silent p.T439T 0.13 TCGA-IQ-A61G-01 15 23191872 23191872 T A WHAMMP3 RNA 0.17 TCGA-IQ-A61G-01 15 23890308 23890308 G C MAGEL2 Missense_Mutation p.A258G 0.21 deleterious(0.03) benign(0.368) TCGA-IQ-A61G-01 15 25585277 25585277 C T UBE3A Missense_Mutation p.G821E 0.20 tolerated(0.05) possibly_damaging(0.907) TCGA-IQ-A61G-01 15 40398126 40398126 G A BMF Silent p.H54H 0.23 TCGA-IQ-A61G-01 15 76019675 76019675 C A ODF3L1 Missense_Mutation p.P207T 0.24 tolerated(0.59) probably_damaging(0.999) TCGA-IQ-A61G-01 16 21038387 21038387 G A DNAH3 Silent p.P1834P 0.35 TCGA-IQ-A61G-01 16 23415099 23415099 C T COG7 Silent p.R573R 0.44 TCGA-IQ-A61G-01 16 28909738 28909738 T G ATP2A1 Missense_Mutation p.V577G 0.33 tolerated(0.38) benign(0.029) TCGA-IQ-A61G-01 16 53481001 53481001 T C RBL2 Missense_Mutation p.L207P 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-IQ-A61G-01 17 12647528 12647528 G A MYOCD Missense_Mutation p.R249H 0.27 deleterious(0) probably_damaging(1) TCGA-IQ-A61G-01 17 37882904 37882904 G A ERBB2 Missense_Mutation p.V988I 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-IQ-A61G-01 17 39983815 39983815 C A NT5C3B Nonsense_Mutation p.E211* 0.79 TCGA-IQ-A61G-01 17 42226060 42226060 C T C17orf53 Missense_Mutation p.P297S 0.51 tolerated(0.18) benign(0.3) TCGA-IQ-A61G-01 17 4443689 4443689 G A MYBBP1A Missense_Mutation p.R1130C 0.06 deleterious(0) probably_damaging(0.979) TCGA-IQ-A61G-01 17 57287809 57287809 C T SMG8 Nonsense_Mutation p.Q133* 0.09 TCGA-IQ-A61G-01 17 67109491 67109491 A G ABCA6 Missense_Mutation p.L638S 0.48 deleterious(0) probably_damaging(1) TCGA-IQ-A61G-01 17 7577559 7577559 G C TP53 Missense_Mutation p.S241C 0.82 deleterious(0) probably_damaging(1) TCGA-IQ-A61G-01 17 7750719 7750719 T C KDM6B Silent p.S402S 0.22 TCGA-IQ-A61G-01 18 48439269 48439269 C T ME2 Missense_Mutation p.P114L 0.31 deleterious(0) probably_damaging(1) TCGA-IQ-A61G-01 18 63477029 63477029 C A CDH7 Missense_Mutation p.N100K 0.44 tolerated(1) benign(0.371) TCGA-IQ-A61G-01 18 76755393 76755393 G A SALL3 Silent p.T1134T 0.64 TCGA-IQ-A61G-01 19 11917357 11917357 A C ZNF491 Missense_Mutation p.N197H 0.32 tolerated(0.67) benign(0.042) TCGA-IQ-A61G-01 19 21132403 21132403 G T ZNF85 Missense_Mutation p.E361D 0.36 deleterious(0) benign(0.065) TCGA-IQ-A61G-01 19 36109507 36109507 C T HAUS5 Missense_Mutation p.R308W 0.30 deleterious(0) probably_damaging(1) TCGA-IQ-A61G-01 19 39219731 39219731 G T ACTN4 Missense_Mutation p.E838D 0.08 deleterious(0.03) possibly_damaging(0.792) TCGA-IQ-A61G-01 19 44635586 44635586 C T ZNF225 Silent p.S273S 0.34 TCGA-IQ-A61G-01 19 48608635 48608635 A C PLA2G4C Silent p.L35L 0.49 TCGA-IQ-A61G-01 19 50139087 50139087 G A RRAS Missense_Mutation p.A159V 0.38 tolerated(0.19) benign(0.027) TCGA-IQ-A61G-01 19 53855241 53855241 C T ZNF845 Missense_Mutation p.P438L 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-IQ-A61G-01 19 55253678 55253678 C T KIR2DL3 Missense_Mutation p.P108L 0.74 deleterious(0.02) probably_damaging(0.999) TCGA-IQ-A61G-01 19 56190148 56190148 C T EPN1 Missense_Mutation p.A163V 0.28 deleterious(0) unknown(0) TCGA-IQ-A61G-01 19 57176562 57176562 T C ZNF835 Missense_Mutation p.E2G 0.20 deleterious(0) possibly_damaging(0.857) TCGA-IQ-A61G-01 1 100318177 100318177 C G AGL Intron 0.50 TCGA-IQ-A61G-01 1 110199045 110199045 G A GSTM4 Missense_Mutation p.G12R 0.21 deleterious(0) probably_damaging(0.996) TCGA-IQ-A61G-01 1 110199046 110199046 G A GSTM4 Missense_Mutation p.G12E 0.21 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61G-01 1 114454293 114454293 G T DCLRE1B Missense_Mutation p.S360I 0.29 tolerated(0.16) benign(0.032) TCGA-IQ-A61G-01 1 1325745 1325745 G C CCNL2 Missense_Mutation p.L291V 0.33 tolerated(0.45) possibly_damaging(0.721) TCGA-IQ-A61G-01 1 158619721 158619721 C T SPTA1 Nonsense_Mutation p.W1165* 0.22 TCGA-IQ-A61G-01 1 16065983 16065983 C T SLC25A34 3'UTR 0.26 TCGA-IQ-A61G-01 1 183094593 183094593 G A LAMC1 Silent p.G903G 0.57 TCGA-IQ-A61G-01 1 192153626 192153626 G T RGS18 Missense_Mutation p.R217L 0.29 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61G-01 1 196274405 196274405 C A KCNT2 Missense_Mutation p.A852S 0.09 deleterious(0.01) possibly_damaging(0.471) TCGA-IQ-A61G-01 1 205272827 205272827 G T NUAK2 Missense_Mutation p.D546E 0.25 tolerated(0.09) benign(0.033) TCGA-IQ-A61G-01 1 215963407 215963407 C T USH2A Missense_Mutation p.M3392I 0.19 benign(0.027) TCGA-IQ-A61G-01 1 247053320 247053320 C A AHCTF1 Missense_Mutation p.V707L 0.26 tolerated(0.56) benign(0.007) TCGA-IQ-A61G-01 1 3761502 3761502 C T CEP104 Missense_Mutation p.E179K 0.18 tolerated(0.29) benign(0.216) TCGA-IQ-A61G-01 1 70541926 70541926 G T LRRC7 Missense_Mutation p.G1428V 0.19 tolerated(0.06) benign(0.272) TCGA-IQ-A61G-01 1 77333344 77333344 C T ST6GALNAC5 5'UTR 0.23 TCGA-IQ-A61G-01 20 16359864 16359864 A C KIF16B Missense_Mutation p.F928C 0.19 tolerated_low_confidence(0.2) benign(0.003) TCGA-IQ-A61G-01 20 18523812 18523812 G A SEC23B Missense_Mutation p.R554Q 0.55 deleterious(0.03) benign(0.269) TCGA-IQ-A61G-01 20 20278851 20278851 G A C20orf26 Silent p.A1081A 0.27 TCGA-IQ-A61G-01 20 23028618 23028618 C A THBD Silent p.P508P 0.69 TCGA-IQ-A61G-01 20 55111330 55111330 G A FAM209B Missense_Mutation p.E118K 0.20 tolerated(0.16) benign(0.122) TCGA-IQ-A61G-01 20 8717816 8717816 G C PLCB1 Missense_Mutation p.E729Q 0.13 deleterious(0) probably_damaging(0.936) TCGA-IQ-A61G-01 21 33044516 33044516 G A SCAF4 Silent p.P880P 0.33 TCGA-IQ-A61G-01 21 34127589 34127589 G A PAXBP1 Nonsense_Mutation p.R487* 0.21 TCGA-IQ-A61G-01 21 37781744 37781744 G T CHAF1B Silent p.L300L 0.34 TCGA-IQ-A61G-01 21 41741077 41741077 G A DSCAM Nonsense_Mutation p.R202* 0.33 TCGA-IQ-A61G-01 22 22681921 22681921 C - IGLV1-50 Frame_Shift_Del p.Q35Rfs*82 0.28 TCGA-IQ-A61G-01 2 109098191 109098191 G A GCC2 Silent p.L1033L 0.21 TCGA-IQ-A61G-01 2 128408482 128408482 G A GPR17 Missense_Mutation p.R86Q 0.49 tolerated(0.27) benign(0.023) TCGA-IQ-A61G-01 2 160637475 160637477 TTC - LY75-CD302 In_Frame_Del p.E1712del 0.69 TCGA-IQ-A61G-01 2 166020938 166020938 G A SCN3A Missense_Mutation p.P189L 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-IQ-A61G-01 2 168067319 168067319 C T XIRP2 Missense_Mutation p.L213F 0.28 benign(0.05) TCGA-IQ-A61G-01 2 175213705 175213705 C G CIR1 Missense_Mutation p.R291S 0.26 tolerated_low_confidence(0.71) unknown(0) TCGA-IQ-A61G-01 2 177036368 177036368 C A HOXD3 Missense_Mutation p.P222Q 0.14 deleterious(0) benign(0.03) TCGA-IQ-A61G-01 2 201499611 201499611 G A AOX1 Silent p.V773V 0.23 TCGA-IQ-A61G-01 2 233245422 233245422 C T ALPP Missense_Mutation p.R319C 0.24 deleterious(0.01) benign(0.089) TCGA-IQ-A61G-01 2 238285684 238285684 C T COL6A3 Missense_Mutation p.S934N 0.30 probably_damaging(1) TCGA-IQ-A61G-01 2 29519891 29519891 C G ALK Missense_Mutation p.L560F 0.42 tolerated(0.44) probably_damaging(1) TCGA-IQ-A61G-01 2 88858450 88858450 C T EIF2AK3 Silent p.Q1045Q 0.47 TCGA-IQ-A61G-01 3 125643926 125643926 C A ALG1L 3'Flank 0.29 TCGA-IQ-A61G-01 3 12623356 12623356 G T MKRN2 Nonsense_Mutation p.G340* 0.09 TCGA-IQ-A61G-01 3 138762753 138762753 G A PRR23C Missense_Mutation p.P237L 0.26 deleterious(0.01) benign(0.049) TCGA-IQ-A61G-01 3 138762838 138762838 G A PRR23C Missense_Mutation p.R209C 0.30 tolerated(0.19) possibly_damaging(0.765) TCGA-IQ-A61G-01 3 178960978 178960978 G C KCNMB3 Missense_Mutation p.P185R 0.17 tolerated(0.12) probably_damaging(0.933) TCGA-IQ-A61G-01 3 179526210 179526210 C A PEX5L Silent p.G456G 0.13 TCGA-IQ-A61G-01 3 193120622 193120622 A C ATP13A4 Missense_Mutation p.M1137R 0.13 tolerated(0.25) benign(0.001) TCGA-IQ-A61G-01 3 197497115 197497115 A G FYTTD1 Missense_Mutation p.K166R 0.25 tolerated(1) benign(0.015) TCGA-IQ-A61G-01 3 3215894 3215894 C T CRBN Missense_Mutation p.D76N 0.26 tolerated(0.14) benign(0.079) TCGA-IQ-A61G-01 3 49723034 49723034 C T MST1 Missense_Mutation p.R461H 0.29 tolerated(0.08) possibly_damaging(0.872) TCGA-IQ-A61G-01 3 50147090 50147090 A G RBM5 Missense_Mutation p.Y416C 0.34 deleterious(0.04) probably_damaging(0.99) TCGA-IQ-A61G-01 3 53781384 53781384 C T CACNA1D Missense_Mutation p.R1095W 0.23 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61G-01 3 56649288 56649288 A T CCDC66 Nonsense_Mutation p.K567* 0.47 TCGA-IQ-A61G-01 4 108566209 108566209 G C PAPSS1 Missense_Mutation p.Q419E 0.25 deleterious(0) probably_damaging(0.964) TCGA-IQ-A61G-01 4 122824075 122824075 A G TRPC3 Missense_Mutation p.F799L 0.05 tolerated(1) benign(0) TCGA-IQ-A61G-01 4 129131155 129131155 A T LARP1B Missense_Mutation p.I898L 0.10 tolerated_low_confidence(0.34) benign(0.001) TCGA-IQ-A61G-01 4 147561255 147561255 C T POU4F2 Silent p.H175H 0.10 TCGA-IQ-A61G-01 4 155529728 155529728 A G FGG Silent p.T247T 0.17 TCGA-IQ-A61G-01 4 49000548 49000548 T G CWH43 Missense_Mutation p.L262W 0.12 tolerated(0.1) benign(0.015) TCGA-IQ-A61G-01 4 62598610 62598610 G C LPHN3 Missense_Mutation p.R178T 0.24 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61G-01 4 65145895 65145895 C T TECRL Missense_Mutation p.M329I 0.18 tolerated(0.06) benign(0.009) TCGA-IQ-A61G-01 4 79400835 79400835 C T FRAS1 Silent p.S2802S 0.34 TCGA-IQ-A61G-01 5 135385250 135385250 C T TGFBI Silent p.G298G 0.10 TCGA-IQ-A61G-01 5 141243498 141243498 G T PCDH1 Missense_Mutation p.P800T 0.45 deleterious(0) probably_damaging(1) TCGA-IQ-A61G-01 5 174869953 174869953 C G DRD1 Missense_Mutation p.R50S 0.20 tolerated(0.11) possibly_damaging(0.543) TCGA-IQ-A61G-01 5 64077858 64077858 A G CWC27 Missense_Mutation p.K84E 0.37 deleterious(0) possibly_damaging(0.607) TCGA-IQ-A61G-01 6 155572056 155572057 - T TIAM2 Frame_Shift_Ins p.S1322Ffs*24 0.30 TCGA-IQ-A61G-01 6 27775416 27775416 A G HIST1H2BL Missense_Mutation p.I90T 0.26 deleterious_low_confidence(0.01) probably_damaging(0.936) TCGA-IQ-A61G-01 6 29012233 29012233 G C OR2W1 Silent p.T240T 0.21 TCGA-IQ-A61G-01 6 31856267 31856267 G A EHMT2 Missense_Mutation p.A461V 0.08 tolerated(0.12) benign(0.002) TCGA-IQ-A61G-01 6 39874632 39874632 G A MOCS1 3'UTR 0.26 TCGA-IQ-A61G-01 6 39874633 39874633 C A MOCS1 3'UTR 0.26 TCGA-IQ-A61G-01 6 79708024 79708024 T C PHIP Missense_Mutation p.D655G 0.30 deleterious(0.02) probably_damaging(0.971) TCGA-IQ-A61G-01 6 84665107 84665107 G A CYB5R4 Silent p.L479L 0.33 TCGA-IQ-A61G-01 7 126086270 126086270 C A GRM8 Missense_Mutation p.A863S 0.24 tolerated(0.09) possibly_damaging(0.609) TCGA-IQ-A61G-01 7 126173748 126173748 T A GRM8 Missense_Mutation p.N563I 0.30 tolerated(0.07) possibly_damaging(0.451) TCGA-IQ-A61G-01 7 154746133 154746133 T C PAXIP1 Missense_Mutation p.K885E 0.22 deleterious(0.01) unknown(0) TCGA-IQ-A61G-01 7 21956456 21956456 A G CDCA7L Silent p.V27V 0.11 TCGA-IQ-A61G-01 7 57188621 57188621 A G ZNF479 Silent p.G167G 0.24 TCGA-IQ-A61G-01 7 72717372 72717372 C G NSUN5 3'UTR 0.31 TCGA-IQ-A61G-01 7 86468447 86468447 C T GRM3 Silent p.Y539Y 0.53 TCGA-IQ-A61G-01 7 90528663 90528663 G A CDK14 Missense_Mutation p.V215M 0.29 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61G-01 7 99808698 99808698 C T STAG3 Silent p.S1101S 0.29 TCGA-IQ-A61G-01 8 100403871 100403871 G T VPS13B Missense_Mutation p.K1007N 0.43 tolerated(0.15) probably_damaging(0.95) TCGA-IQ-A61G-01 8 101717845 101717845 G A PABPC1 Silent p.A553A 0.10 TCGA-IQ-A61G-01 8 120118212 120118212 C T COLEC10 Missense_Mutation p.R206W 0.49 deleterious(0) probably_damaging(1) TCGA-IQ-A61G-01 8 133900553 133900553 C T TG Missense_Mutation p.P834L 0.41 deleterious(0) benign(0.399) TCGA-IQ-A61G-01 8 25319725 25319725 G T CDCA2 Splice_Site p.X129_splice 0.25 TCGA-IQ-A61G-01 8 56015384 56015384 C A XKR4 Nonsense_Mutation p.C112* 0.39 TCGA-IQ-A61G-01 8 77616692 77616692 C T ZFHX4 Silent p.D123D 0.58 TCGA-IQ-A61G-01 8 97172889 97172889 A T GDF6 Missense_Mutation p.V11D 0.21 deleterious(0) possibly_damaging(0.48) TCGA-IQ-A61G-01 9 114304133 114304133 C T ZNF483 Silent p.P306P 0.25 TCGA-IQ-A61G-01 9 117552979 117552979 C T TNFSF15 Missense_Mutation p.R170Q 0.08 tolerated(0.65) benign(0.003) TCGA-IQ-A61G-01 9 71491651 71491651 G A PIP5K1B Missense_Mutation p.A87T 0.32 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61G-01 9 97522357 97522357 G A C9orf3 Missense_Mutation p.D98N 0.49 tolerated(0.09) benign(0.347) TCGA-IQ-A61G-01 X 120008774 120008774 A T CT47B1 Missense_Mutation p.S251T 0.78 tolerated(0.84) unknown(0) TCGA-IQ-A61G-01 X 142717515 142717515 G A SLITRK4 Silent p.D470D 0.64 TCGA-IQ-A61G-01 X 1585382 1585382 C - P2RY8 Frame_Shift_Del p.V24Wfs*39 0.36 TCGA-IQ-A61G-01 X 20156731 20156731 C T EIF1AX Missense_Mutation p.G9D 0.79 deleterious(0) unknown(0) TCGA-IQ-A61G-01 X 34962546 34962546 G A FAM47B Missense_Mutation p.R533Q 0.69 tolerated(1) benign(0.001) TCGA-IQ-A61G-01 X 50054268 50054268 A G CCNB3 Silent p.L1033L 0.71 TCGA-IQ-A61G-01 X 72432954 72432954 C A NAP1L2 Missense_Mutation p.D459Y 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IQ-A61H-01 10 134598385 134598385 C T NKX6-2 3'UTR 0.12 TCGA-IQ-A61H-01 10 26802572 26802572 G T APBB1IP Missense_Mutation p.V266L 0.12 tolerated(1) benign(0.02) TCGA-IQ-A61H-01 10 75556586 75556586 A G ZSWIM8 Missense_Mutation p.S1030G 0.11 deleterious(0.02) probably_damaging(0.979) TCGA-IQ-A61H-01 10 77807015 77807015 G A C10orf11 Missense_Mutation p.E90K 0.06 deleterious(0.01) benign(0.28) TCGA-IQ-A61H-01 11 103070182 103070182 C T DYNC2H1 Nonsense_Mutation p.Q2689* 0.17 TCGA-IQ-A61H-01 11 20448356 20448356 T C PRMT3 Missense_Mutation p.I313T 0.27 probably_damaging(0.986) TCGA-IQ-A61H-01 11 22214947 22214947 G T ANO5 5'UTR 0.44 TCGA-IQ-A61H-01 11 40136785 40136785 G A LRRC4C Missense_Mutation p.A353V 0.19 tolerated(0.11) benign(0.004) TCGA-IQ-A61H-01 11 55703134 55703134 G T OR5I1 Missense_Mutation p.T248N 0.11 deleterious(0) probably_damaging(0.929) TCGA-IQ-A61H-01 11 55735497 55735497 A C OR10AG1 Missense_Mutation p.I148S 0.17 deleterious(0) possibly_damaging(0.484) TCGA-IQ-A61H-01 11 64067045 64067045 C T KCNK4 Silent p.N343N 0.22 TCGA-IQ-A61H-01 11 6472280 6472280 C T TRIM3 Missense_Mutation p.G571E 0.18 deleterious(0) probably_damaging(1) TCGA-IQ-A61H-01 11 65347886 65347886 G A EHBP1L1 Silent p.E190E 0.19 TCGA-IQ-A61H-01 11 65349278 65349278 G A EHBP1L1 Missense_Mutation p.E379K 0.25 tolerated(0.12) benign(0.178) TCGA-IQ-A61H-01 11 65349394 65349394 G C EHBP1L1 Missense_Mutation p.E417D 0.16 deleterious(0.05) benign(0.025) TCGA-IQ-A61H-01 11 65349860 65349860 G T EHBP1L1 Nonsense_Mutation p.E573* 0.22 TCGA-IQ-A61H-01 11 65350465 65350465 G A EHBP1L1 Silent p.L774L 0.16 TCGA-IQ-A61H-01 11 65350558 65350558 G T EHBP1L1 Missense_Mutation p.E805D 0.22 tolerated(0.31) benign(0.114) TCGA-IQ-A61H-01 11 65350805 65350805 G T EHBP1L1 Nonsense_Mutation p.E888* 0.12 TCGA-IQ-A61H-01 11 65350925 65350925 G A EHBP1L1 Missense_Mutation p.E928K 0.29 tolerated(0.06) possibly_damaging(0.642) TCGA-IQ-A61H-01 11 66625194 66625194 C A LRFN4 5'UTR 0.22 TCGA-IQ-A61H-01 11 71800103 71800103 T C LRTOMT 5'UTR 0.10 TCGA-IQ-A61H-01 11 72296443 72296443 C T PDE2A Missense_Mutation p.E420K 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-IQ-A61H-01 11 72296444 72296444 C T PDE2A Silent p.T419T 0.10 TCGA-IQ-A61H-01 11 7530749 7530749 G A OLFML1 Missense_Mutation p.G180E 0.22 deleterious(0) probably_damaging(1) TCGA-IQ-A61H-01 11 792392 792392 C T SLC25A22 Silent p.A218A 0.19 TCGA-IQ-A61H-01 11 864504 864504 C T TSPAN4 Missense_Mutation p.T108M 0.17 tolerated(0.29) benign(0.017) TCGA-IQ-A61H-01 12 102158696 102158696 C T GNPTAB Missense_Mutation p.E667K 0.08 tolerated(0.08) possibly_damaging(0.852) TCGA-IQ-A61H-01 12 10572189 10572189 A C KLRC3 Intron 0.12 TCGA-IQ-A61H-01 12 12496028 12496028 G A MANSC1 Missense_Mutation p.S74L 0.12 deleterious(0.01) possibly_damaging(0.543) TCGA-IQ-A61H-01 12 4920199 4920199 A G KCNA6 Missense_Mutation p.N331S 0.17 tolerated(0.47) possibly_damaging(0.617) TCGA-IQ-A61H-01 12 50616264 50616264 G A LIMA1 Missense_Mutation p.T57I 0.21 tolerated(0.42) benign(0.094) TCGA-IQ-A61H-01 12 52788815 52788815 G A KRT82 Missense_Mutation p.R496W 0.25 tolerated(0.07) benign(0.002) TCGA-IQ-A61H-01 12 75706697 75706697 T A CAPS2 Splice_Site p.X217_splice 0.17 TCGA-IQ-A61H-01 12 76449836 76449836 C T NAP1L1 Missense_Mutation p.D179N 0.17 tolerated(0.06) benign(0.285) TCGA-IQ-A61H-01 12 81675076 81675076 C A PPFIA2 Missense_Mutation p.D1058Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61H-01 12 91357909 91357909 C T EPYC 3'UTR 0.05 TCGA-IQ-A61H-01 12 95424518 95424518 C T NR2C1 Intron 0.26 TCGA-IQ-A61H-01 13 101759890 101759890 C G NALCN Missense_Mutation p.E843Q 0.12 tolerated(0.07) probably_damaging(0.954) TCGA-IQ-A61H-01 13 35747697 35747697 T C NBEA Missense_Mutation p.V1507A 0.11 tolerated(1) benign(0) TCGA-IQ-A61H-01 13 95243181 95243181 G C TGDS Missense_Mutation p.S80C 0.18 deleterious(0.02) possibly_damaging(0.705) TCGA-IQ-A61H-01 14 62550927 62550927 C T SYT16 Missense_Mutation p.P483L 0.18 tolerated(0.15) benign(0.002) TCGA-IQ-A61H-01 14 64988828 64988828 T C ZBTB1 Silent p.S202S 0.17 TCGA-IQ-A61H-01 14 71200025 71200025 C G MAP3K9 Missense_Mutation p.E701D 0.15 tolerated(0.25) benign(0.008) TCGA-IQ-A61H-01 14 74062114 74062114 G A ACOT4 Missense_Mutation p.R341Q 0.17 tolerated(0.07) possibly_damaging(0.69) TCGA-IQ-A61H-01 14 74522295 74522295 T C CCDC176 Missense_Mutation p.I432T 0.14 tolerated(0.33) benign(0.031) TCGA-IQ-A61H-01 14 79111764 79111764 G A NRXN3 Intron 0.29 TCGA-IQ-A61H-01 14 89747335 89747335 G A FOXN3 Missense_Mutation p.P235L 0.07 tolerated(1) benign(0.194) TCGA-IQ-A61H-01 15 75682073 75682073 C G SIN3A Missense_Mutation p.D981H 0.33 deleterious(0) probably_damaging(0.938) TCGA-IQ-A61H-01 15 89424836 89424836 C T HAPLN3 Missense_Mutation p.R82Q 0.21 tolerated(0.06) probably_damaging(0.994) TCGA-IQ-A61H-01 16 11349065 11349065 C T SOCS1 Missense_Mutation p.E91K 0.18 tolerated(0.47) benign(0.281) TCGA-IQ-A61H-01 16 57416888 57416888 C A CX3CL1 Missense_Mutation p.L380I 0.15 tolerated(0.09) possibly_damaging(0.706) TCGA-IQ-A61H-01 16 67043004 67043004 C G CES4A 3'UTR 0.09 TCGA-IQ-A61H-01 16 69727125 69727125 C G NFAT5 Missense_Mutation p.P1133A 0.12 benign(0.002) TCGA-IQ-A61H-01 17 10293762 10293762 C A MYH8 3'UTR 0.13 TCGA-IQ-A61H-01 17 10533201 10533201 C T MYH3 Silent p.L1872L 0.42 TCGA-IQ-A61H-01 17 29272068 29272068 G A ADAP2 Silent p.G218G 0.31 TCGA-IQ-A61H-01 17 39274446 39274446 C T KRTAP4-11 Missense_Mutation p.R41H 0.42 tolerated(0.06) unknown(0) TCGA-IQ-A61H-01 17 40461401 40461401 G A STAT5A Silent p.V707V 0.13 TCGA-IQ-A61H-01 17 44950110 44950110 T C WNT9B Missense_Mutation p.L102P 0.18 deleterious(0) probably_damaging(0.976) TCGA-IQ-A61H-01 17 74005051 74005051 A T EVPL Missense_Mutation p.L1412Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61H-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.36 TCGA-IQ-A61H-01 17 79612378 79612378 G A TSPAN10 Missense_Mutation p.A133T 0.35 tolerated(0.48) benign(0) TCGA-IQ-A61H-01 17 9792806 9792806 G A GLP2R Silent p.S482S 0.30 TCGA-IQ-A61H-01 18 19996126 19996126 C G CTAGE1 Missense_Mutation p.R550T 0.12 tolerated(0.05) benign(0.034) TCGA-IQ-A61H-01 18 3188826 3188826 G C MYOM1 Missense_Mutation p.Q231E 0.29 tolerated_low_confidence(0.97) benign(0.001) TCGA-IQ-A61H-01 18 32948296 32948296 C A ZNF396 3'UTR 0.16 TCGA-IQ-A61H-01 18 33552639 33552639 G T C18orf21 5'UTR 0.20 TCGA-IQ-A61H-01 18 51013227 51013227 C T DCC Missense_Mutation p.P1266L 0.23 tolerated(0.19) probably_damaging(0.99) TCGA-IQ-A61H-01 18 63491992 63491992 G A CDH7 Silent p.V302V 0.08 TCGA-IQ-A61H-01 18 76753377 76753377 C T SALL3 Silent p.N462N 0.22 TCGA-IQ-A61H-01 19 11101923 11101923 G A SMARCA4 Missense_Mutation p.R448H 0.13 probably_damaging(0.993) TCGA-IQ-A61H-01 19 17972909 17972909 G C RPL18A Missense_Mutation p.E69Q 0.25 deleterious(0) probably_damaging(0.958) TCGA-IQ-A61H-01 19 22155266 22155266 C A ZNF208 Missense_Mutation p.G857V 0.09 deleterious(0) unknown(0) TCGA-IQ-A61H-01 19 3642902 3642902 C T PIP5K1C Intron 0.21 TCGA-IQ-A61H-01 19 36497710 36497710 C T SYNE4 Missense_Mutation p.R187Q 0.23 tolerated(0.29) possibly_damaging(0.602) TCGA-IQ-A61H-01 19 38126661 38126661 G C ZFP30 Missense_Mutation p.Q261E 0.16 tolerated(0.06) benign(0.061) TCGA-IQ-A61H-01 19 40098046 40098046 C T LGALS13 3'UTR 0.27 TCGA-IQ-A61H-01 19 42582950 42582950 G A ZNF574 Silent p.T64T 0.06 TCGA-IQ-A61H-01 19 47570716 47570716 C T ZC3H4 Missense_Mutation p.V937M 0.22 unknown(0) TCGA-IQ-A61H-01 19 53754794 53754794 A G ZNF677 Missense_Mutation p.S4P 0.15 tolerated(0.41) benign(0.134) TCGA-IQ-A61H-01 19 56466571 56466571 G C NLRP8 Missense_Mutation p.A383P 0.23 tolerated(0.07) probably_damaging(0.915) TCGA-IQ-A61H-01 19 57293445 57293445 C T ZIM2 Silent p.E174E 0.19 TCGA-IQ-A61H-01 1 150048364 150048364 G A VPS45 Missense_Mutation p.E115K 0.33 deleterious(0.01) possibly_damaging(0.612) TCGA-IQ-A61H-01 1 153659173 153659173 G A NPR1 Missense_Mutation p.D604N 0.18 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61H-01 1 156213684 156213684 G C PAQR6 Missense_Mutation p.L342V 0.17 deleterious_low_confidence(0) unknown(0) TCGA-IQ-A61H-01 1 157514217 157514217 G A FCRL5 Missense_Mutation p.R227C 0.15 tolerated(0.19) benign(0.001) TCGA-IQ-A61H-01 1 157556153 157556153 C T FCRL4 Missense_Mutation p.E314K 0.05 tolerated(0.34) benign(0.259) TCGA-IQ-A61H-01 1 161495172 161495172 C T HSPA6 Missense_Mutation p.H242Y 0.27 tolerated_low_confidence(0.06) benign(0.3) TCGA-IQ-A61H-01 1 17030559 17030559 G C ESPNP RNA 0.16 TCGA-IQ-A61H-01 1 181726170 181726173 TTCT - CACNA1E Frame_Shift_Del p.F1413Lfs*20 0.31 TCGA-IQ-A61H-01 1 183913418 183913418 C A COLGALT2 Missense_Mutation p.D437Y 0.05 deleterious(0) probably_damaging(0.996) TCGA-IQ-A61H-01 1 192998768 192998768 G C UCHL5 Missense_Mutation p.A89G 0.16 deleterious(0) probably_damaging(0.916) TCGA-IQ-A61H-01 1 193028340 193028340 G C UCHL5 Silent p.V17V 0.16 TCGA-IQ-A61H-01 1 196928243 196928243 C A CFHR2 3'UTR 0.35 TCGA-IQ-A61H-01 1 201061191 201061191 G A CACNA1S Silent p.A150A 0.31 TCGA-IQ-A61H-01 1 2235348 2235348 G A SKI Silent p.Q427Q 0.18 TCGA-IQ-A61H-01 1 247751914 247751914 C A OR2G2 Missense_Mutation p.L85M 0.05 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61H-01 1 247978594 247978594 A T OR14A16 Silent p.S146S 0.06 TCGA-IQ-A61H-01 1 34204889 34204889 G T CSMD2 Silent p.G700G 0.19 TCGA-IQ-A61H-01 1 36030832 36030832 T G NCDN Silent p.L586L 0.17 TCGA-IQ-A61H-01 1 38269639 38269639 T A YRDC Missense_Mutation p.Q266H 0.28 tolerated(0.15) benign(0.002) TCGA-IQ-A61H-01 1 53722976 53722976 G A LRP8 Silent p.V790V 0.06 TCGA-IQ-A61H-01 1 78470850 78470853 ATAT - DNAJB4 Frame_Shift_Del p.D19Vfs*36 0.29 TCGA-IQ-A61H-01 20 44596466 44596466 C T ZNF335 Missense_Mutation p.V241M 0.41 deleterious(0) probably_damaging(0.954) TCGA-IQ-A61H-01 20 47296206 47296206 C G PREX1 Missense_Mutation p.E508Q 0.20 tolerated(0.61) probably_damaging(0.999) TCGA-IQ-A61H-01 20 48129715 48129715 C T PTGIS Missense_Mutation p.A370T 0.41 deleterious(0.03) probably_damaging(0.939) TCGA-IQ-A61H-01 20 60913316 60913316 G A LAMA5 Silent p.P576P 0.22 TCGA-IQ-A61H-01 20 62187169 62187169 C T C20orf195 Silent p.F51F 0.27 TCGA-IQ-A61H-01 20 62891516 62891516 G A PCMTD2 Silent p.P66P 0.48 TCGA-IQ-A61H-01 21 10920159 10920159 G T TPTE Missense_Mutation p.S365R 0.06 deleterious(0.01) probably_damaging(0.974) TCGA-IQ-A61H-01 22 17601203 17601203 G T CECR6 Missense_Mutation p.P272Q 0.26 deleterious_low_confidence(0.02) unknown(0) TCGA-IQ-A61H-01 22 20970528 20970528 G A SMPD4P1 Intron 0.30 TCGA-IQ-A61H-01 22 21355551 21355551 C T THAP7 Missense_Mutation p.G77E 0.07 deleterious(0) possibly_damaging(0.706) TCGA-IQ-A61H-01 22 24057285 24057285 G A KB-1572G7.2 RNA 0.25 TCGA-IQ-A61H-01 22 32909635 32909635 G T SYN3 3'UTR 0.10 TCGA-IQ-A61H-01 22 41609718 41609718 T C L3MBTL2 Intron 0.29 TCGA-IQ-A61H-01 22 42457071 42457071 C T NAGA Missense_Mutation p.E320K 0.22 tolerated(0.36) benign(0.002) TCGA-IQ-A61H-01 22 44234744 44234744 C A SULT4A1 Intron 0.28 TCGA-IQ-A61H-01 2 113591057 113591057 C T IL1B Silent p.A65A 0.16 TCGA-IQ-A61H-01 2 162865097 162865097 C T DPP4 Silent p.A654A 0.19 TCGA-IQ-A61H-01 2 167089911 167089911 G A SCN9A Missense_Mutation p.S1277F 0.14 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61H-01 2 175677211 175677211 C G CHN1 Splice_Site p.X238_splice 0.20 TCGA-IQ-A61H-01 2 178098960 178098960 C A NFE2L2 Missense_Mutation p.D29Y 0.20 deleterious(0) probably_damaging(1) TCGA-IQ-A61H-01 2 179642012 179642012 C T TTN Missense_Mutation p.E1560K 0.18 TCGA-IQ-A61H-01 2 207527900 207527900 C G DYTN Missense_Mutation p.E454Q 0.35 tolerated(0.1) benign(0.022) TCGA-IQ-A61H-01 2 26532084 26532084 C G GPR113 3'Flank 0.26 TCGA-IQ-A61H-01 2 68358351 68358351 C G WDR92 3'UTR 0.10 TCGA-IQ-A61H-01 2 68358543 68358543 C T WDR92 Missense_Mutation p.E301K 0.06 deleterious(0.05) benign(0.001) TCGA-IQ-A61H-01 2 73961564 73961564 G A TPRKB Missense_Mutation p.P45S 0.35 tolerated(0.06) benign(0.272) TCGA-IQ-A61H-01 3 10290992 10290992 C G TATDN2 Missense_Mutation p.S36R 0.06 tolerated_low_confidence(0.06) benign(0.01) TCGA-IQ-A61H-01 3 121554181 121554181 C G EAF2 Missense_Mutation p.L17V 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-IQ-A61H-01 3 122003928 122003928 G A CASR Missense_Mutation p.E1053K 0.12 tolerated_low_confidence(0.13) benign(0.046) TCGA-IQ-A61H-01 3 125877269 125877269 C T ALDH1L1 Missense_Mutation p.R124Q 0.14 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-IQ-A61H-01 3 12861601 12861601 G A CAND2 Silent p.R987R 0.23 TCGA-IQ-A61H-01 3 142078708 142078708 T C XRN1 Missense_Mutation p.I1154V 0.10 tolerated(0.05) benign(0.003) TCGA-IQ-A61H-01 3 142089455 142089455 T G XRN1 Missense_Mutation p.K1026Q 0.12 tolerated(0.06) possibly_damaging(0.459) TCGA-IQ-A61H-01 3 193382668 193382668 G A OPA1 Splice_Site p.X870_splice 0.11 TCGA-IQ-A61H-01 3 28454850 28454850 T A ZCWPW2 Silent p.P97P 0.09 TCGA-IQ-A61H-01 3 30691832 30691832 A G TGFBR2 Missense_Mutation p.I137V 0.34 tolerated(0.68) benign(0) TCGA-IQ-A61H-01 3 38040429 38040429 G A VILL Silent p.P323P 0.22 TCGA-IQ-A61H-01 3 38049775 38049775 G A PLCD1 Silent p.G683G 0.26 TCGA-IQ-A61H-01 3 39156139 39156139 G A TTC21A Missense_Mutation p.V208M 0.35 deleterious(0.04) benign(0.126) TCGA-IQ-A61H-01 3 49742512 49742512 C T RNF123 Silent p.L685L 0.35 TCGA-IQ-A61H-01 3 98507004 98507004 C T ST3GAL6 Missense_Mutation p.L186F 0.22 tolerated(0.09) benign(0.327) TCGA-IQ-A61H-01 4 55138567 55138567 C T PDGFRA Missense_Mutation p.S415L 0.07 deleterious(0.01) benign(0.027) TCGA-IQ-A61H-01 4 57377361 57377361 A T ARL9 5'UTR 0.31 TCGA-IQ-A61H-01 4 8229893 8229893 C T SH3TC1 Silent p.I824I 0.12 TCGA-IQ-A61H-01 4 82366922 82366922 T C RASGEF1B Missense_Mutation p.Y267C 0.17 deleterious(0) probably_damaging(0.976) TCGA-IQ-A61H-01 5 110407527 110407527 T A TSLP 5'UTR 0.23 TCGA-IQ-A61H-01 5 127873057 127873057 C T FBN2 Silent p.Q80Q 0.24 TCGA-IQ-A61H-01 5 14304622 14304622 C T TRIO Missense_Mutation p.P474L 0.21 possibly_damaging(0.644) TCGA-IQ-A61H-01 5 32088217 32088217 G A PDZD2 Missense_Mutation p.A1555T 0.26 deleterious(0) possibly_damaging(0.906) TCGA-IQ-A61H-01 5 32313015 32313015 G A MTMR12 5'UTR 0.41 TCGA-IQ-A61H-01 5 79770487 79770487 C G ZFYVE16 Missense_Mutation p.F1433L 0.06 deleterious(0.01) possibly_damaging(0.676) TCGA-IQ-A61H-01 5 9630065 9630065 A T TAS2R1 Missense_Mutation p.I27N 0.21 deleterious(0) probably_damaging(0.967) TCGA-IQ-A61H-01 6 105577362 105577362 G T BVES Silent p.I81I 0.19 TCGA-IQ-A61H-01 6 112029202 112029202 G A FYN Silent p.A122A 0.19 TCGA-IQ-A61H-01 6 133044249 133044249 A T VNN3 Intron 0.14 TCGA-IQ-A61H-01 6 136599260 136599261 AG - BCLAF1 Frame_Shift_Del p.S253Cfs*15 0.11 TCGA-IQ-A61H-01 6 158516916 158516916 G A SYNJ2 Silent p.K1337K 0.21 TCGA-IQ-A61H-01 6 163984721 163984721 G C QKI Missense_Mutation p.E302Q 0.24 tolerated(0.05) probably_damaging(0.993) TCGA-IQ-A61H-01 6 25727227 25727227 C T HIST1H2BA Missense_Mutation p.R31C 0.17 tolerated_low_confidence(0.09) benign(0.41) TCGA-IQ-A61H-01 6 26027344 26027344 C T HIST1H4B Missense_Mutation p.R46Q 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-IQ-A61H-01 6 26392579 26392579 A G BTN2A2 Intron 0.08 TCGA-IQ-A61H-01 6 33272235 33272235 G A TAPBP Missense_Mutation p.S350L 0.15 deleterious(0) probably_damaging(1) TCGA-IQ-A61H-01 6 36978761 36978761 A C FGD2 Missense_Mutation p.K105Q 0.21 deleterious(0.05) benign(0.147) TCGA-IQ-A61H-01 6 46620227 46620227 G A CYP39A1 Silent p.C31C 0.16 TCGA-IQ-A61H-01 7 134927560 134927560 C T STRA8 Missense_Mutation p.H96Y 0.21 tolerated(0.5) benign(0.001) TCGA-IQ-A61H-01 7 143141293 143141294 CT - TAS2R60 Frame_Shift_Del p.S251Ffs*26 0.14 TCGA-IQ-A61H-01 7 151962255 151962255 C T KMT2C Missense_Mutation p.G351E 0.07 probably_damaging(1) TCGA-IQ-A61H-01 7 31855619 31855619 C G PDE1C Missense_Mutation p.G638R 0.08 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-IQ-A61H-01 7 38424475 38424475 C G AMPH Missense_Mutation p.D678H 0.17 deleterious(0.01) probably_damaging(1) TCGA-IQ-A61H-01 7 50742257 50742257 G A GRB10 Silent p.L80L 0.21 TCGA-IQ-A61H-01 7 5336803 5336803 G T SLC29A4 Missense_Mutation p.D286Y 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-IQ-A61H-01 7 56082733 56082733 C T PSPH Missense_Mutation p.E185K 0.17 deleterious(0) possibly_damaging(0.625) TCGA-IQ-A61H-01 7 75051453 75051453 C T POM121C Silent p.P694P 0.25 TCGA-IQ-A61H-01 7 86493637 86493637 G A GRM3 Missense_Mutation p.R869Q 0.24 tolerated_low_confidence(0.06) benign(0.361) TCGA-IQ-A61H-01 8 100866145 100866145 G C VPS13B Missense_Mutation p.D3535H 0.09 deleterious(0) possibly_damaging(0.861) TCGA-IQ-A61H-01 8 133153535 133153535 G C KCNQ3 Missense_Mutation p.R436G 0.33 deleterious(0) possibly_damaging(0.872) TCGA-IQ-A61H-01 8 39114738 39114738 G A ADAM32 Missense_Mutation p.E680K 0.09 tolerated(0.34) benign(0.01) TCGA-IQ-A61H-01 8 61654293 61654293 C T CHD7 Missense_Mutation p.P101L 0.22 possibly_damaging(0.726) TCGA-IQ-A61H-01 8 77617976 77617976 C G ZFHX4 Missense_Mutation p.N551K 0.44 benign(0) TCGA-IQ-A61H-01 9 104152981 104152981 G C MRPL50 Missense_Mutation p.L82V 0.16 tolerated(0.71) benign(0.02) TCGA-IQ-A61H-01 9 123908403 123908403 G C CNTRL Missense_Mutation p.E1110Q 0.22 probably_damaging(0.947) TCGA-IQ-A61H-01 9 129870815 129870815 T C ANGPTL2 Missense_Mutation p.T66A 0.21 deleterious(0.02) benign(0.113) TCGA-IQ-A61H-01 9 140128975 140128975 C T SLC34A3 Missense_Mutation p.P401S 0.38 deleterious(0) probably_damaging(0.977) TCGA-IQ-A61H-01 X 11206869 11206869 C G ARHGAP6 Silent p.P352P 0.35 TCGA-IQ-A61H-01 X 153697014 153697014 C T PLXNA3 Missense_Mutation p.S1410L 0.20 deleterious(0) probably_damaging(0.956) TCGA-IQ-A61H-01 X 2408255 2408255 G C ZBED1 Missense_Mutation p.S169C 0.27 tolerated(0.32) benign(0) TCGA-IQ-A61H-01 X 24593404 24593404 T - PCYT1B Frame_Shift_Del p.D247Afs*3 0.35 TCGA-IQ-A61H-01 X 63410190 63410190 T A AMER1 Missense_Mutation p.T993S 0.28 tolerated(0.25) benign(0.007) TCGA-IQ-A61H-01 X 65390540 65390540 G A HEPH Missense_Mutation p.G97E 0.35 deleterious(0.04) possibly_damaging(0.87) TCGA-IQ-A61H-01 X 69649407 69649407 C T GDPD2 Missense_Mutation p.T334M 0.07 tolerated(0.06) benign(0.149) TCGA-IQ-A61I-01 10 106128284 106128284 C T CCDC147 Missense_Mutation p.S299F 0.35 tolerated(0.06) benign(0.009) TCGA-IQ-A61I-01 10 115409891 115409891 G A NRAP Missense_Mutation p.H265Y 0.31 deleterious(0.01) benign(0.007) TCGA-IQ-A61I-01 10 24832954 24832954 C T KIAA1217 Silent p.L1585L 0.40 TCGA-IQ-A61I-01 10 28970441 28970441 G A BAMBI Missense_Mutation p.D111N 0.35 tolerated(0.05) possibly_damaging(0.893) TCGA-IQ-A61I-01 10 48429026 48429026 C T GDF10 Missense_Mutation p.R287H 0.39 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61I-01 10 50824598 50824598 G C CHAT Missense_Mutation p.E113Q 0.14 tolerated(0.07) benign(0.372) TCGA-IQ-A61I-01 10 90750754 90750754 C A ACTA2 5'UTR 0.35 TCGA-IQ-A61I-01 11 10819221 10819221 G A EIF4G2 3'UTR 0.39 TCGA-IQ-A61I-01 11 10821737 10821737 G A EIF4G2 Silent p.L673L 0.18 TCGA-IQ-A61I-01 11 10823929 10823929 G T EIF4G2 Missense_Mutation p.F350L 0.34 tolerated(0.4) probably_damaging(0.98) TCGA-IQ-A61I-01 11 108380744 108380744 C G EXPH5 Silent p.L1830L 0.40 TCGA-IQ-A61I-01 11 113269959 113269959 G A ANKK1 Missense_Mutation p.R423Q 0.22 tolerated(0.18) benign(0) TCGA-IQ-A61I-01 11 120008395 120008395 C T TRIM29 Silent p.K115K 0.08 TCGA-IQ-A61I-01 11 120351118 120351118 G A ARHGEF12 Missense_Mutation p.D1406N 0.05 tolerated_low_confidence(0.08) benign(0.142) TCGA-IQ-A61I-01 11 130131665 130131665 A T ZBTB44 Missense_Mutation p.I35N 0.31 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61I-01 11 1310007 1310007 C T TOLLIP Splice_Site p.X123_splice 0.45 TCGA-IQ-A61I-01 11 32956885 32956885 G A QSER1 Missense_Mutation p.D1232N 0.05 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61I-01 11 33565363 33565363 G A KIAA1549L Missense_Mutation p.D455N 0.30 tolerated_low_confidence(0.95) benign(0) TCGA-IQ-A61I-01 11 49974168 49974168 C A OR4C13 Missense_Mutation p.S65Y 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-IQ-A61I-01 11 6048161 6048161 G A OR56A1 Silent p.F258F 0.38 TCGA-IQ-A61I-01 11 64812754 64812754 C T NAALADL1 Missense_Mutation p.A738T 0.26 tolerated(0.19) benign(0.017) TCGA-IQ-A61I-01 11 65684777 65684777 G T C11orf68 3'UTR 0.37 TCGA-IQ-A61I-01 11 6867629 6867629 T C OR10A5 Missense_Mutation p.F239S 0.04 deleterious(0) probably_damaging(0.928) TCGA-IQ-A61I-01 11 74638504 74638504 C T XRRA1 Missense_Mutation p.E144K 0.31 deleterious(0) possibly_damaging(0.706) TCGA-IQ-A61I-01 12 101680212 101680212 G A UTP20 Nonsense_Mutation p.W147* 0.29 TCGA-IQ-A61I-01 12 122219123 122219123 C T TMEM120B 3'UTR 0.37 TCGA-IQ-A61I-01 12 416876 416876 G A KDM5A Missense_Mutation p.T1225I 0.06 deleterious(0.01) possibly_damaging(0.747) TCGA-IQ-A61I-01 12 44537383 44537383 G A TMEM117 Missense_Mutation p.A156T 0.20 deleterious(0) probably_damaging(0.99) TCGA-IQ-A61I-01 12 52639288 52639288 C T KRT7 Silent p.A359A 0.30 TCGA-IQ-A61I-01 12 53293763 53293763 G A KRT8 Silent p.I287I 0.24 TCGA-IQ-A61I-01 12 57317815 57317815 G C SDR9C7 Missense_Mutation p.N248K 0.37 tolerated(1) benign(0.146) TCGA-IQ-A61I-01 12 6471399 6471399 C T SCNN1A Silent p.Q290Q 0.32 TCGA-IQ-A61I-01 12 6925176 6925176 C T CD4 Intron 0.29 TCGA-IQ-A61I-01 14 102825817 102825817 T A CINP Missense_Mutation p.T54S 0.31 tolerated(0.8) benign(0.034) TCGA-IQ-A61I-01 14 103410646 103410646 G C CDC42BPB Silent p.L1330L 0.39 TCGA-IQ-A61I-01 14 103410676 103410676 G A CDC42BPB Silent p.I1320I 0.40 TCGA-IQ-A61I-01 14 23945421 23945421 A T NGDN Intron 0.44 TCGA-IQ-A61I-01 14 54418948 54418948 C T BMP4 Splice_Site 0.36 TCGA-IQ-A61I-01 15 25440081 25440081 G A SNORD115-14 RNA 0.05 TCGA-IQ-A61I-01 15 40259877 40259877 C T EIF2AK4 Silent p.L450L 0.05 TCGA-IQ-A61I-01 15 42139713 42139713 C T PLA2G4B Missense_Mutation p.S940L 0.26 tolerated(0.18) possibly_damaging(0.777) TCGA-IQ-A61I-01 15 43526973 43526973 C T TGM5 Silent p.T623T 0.05 TCGA-IQ-A61I-01 15 43766890 43766890 T C TP53BP1 Silent p.T387T 0.44 TCGA-IQ-A61I-01 15 43896333 43896333 C T STRC Silent p.E1412E 0.42 TCGA-IQ-A61I-01 15 44907628 44907628 G C SPG11 Missense_Mutation p.Q991E 0.08 tolerated(0.3) benign(0.001) TCGA-IQ-A61I-01 15 66191233 66191233 G A MEGF11 Missense_Mutation p.S936F 0.06 deleterious(0.05) possibly_damaging(0.762) TCGA-IQ-A61I-01 15 82335479 82335479 G A MEX3B 3'UTR 0.10 TCGA-IQ-A61I-01 16 11850101 11850101 C T ZC3H7A Missense_Mutation p.E852K 0.32 deleterious(0.01) possibly_damaging(0.619) TCGA-IQ-A61I-01 16 19501748 19501748 C T TMC5 Nonsense_Mutation p.R869* 0.04 TCGA-IQ-A61I-01 16 2487144 2487144 G A CCNF Missense_Mutation p.E121K 0.04 deleterious(0.01) possibly_damaging(0.597) TCGA-IQ-A61I-01 16 3254607 3254607 G A OR1F1 Missense_Mutation p.D121N 0.38 deleterious(0.01) benign(0.32) TCGA-IQ-A61I-01 16 66599825 66599825 G A CKLF Missense_Mutation p.D124N 0.13 deleterious(0) probably_damaging(0.993) TCGA-IQ-A61I-01 16 69404416 69404416 G T TERF2 Missense_Mutation p.H228Q 0.45 deleterious(0.03) probably_damaging(0.973) TCGA-IQ-A61I-01 16 84438772 84438772 G A ATP2C2 Silent p.T83T 0.10 TCGA-IQ-A61I-01 16 9009317 9009317 G T USP7 Missense_Mutation p.F324L 0.27 tolerated(0.23) possibly_damaging(0.731) TCGA-IQ-A61I-01 17 16455848 16455848 A G ZNF287 Silent p.Y536Y 0.43 TCGA-IQ-A61I-01 17 17722964 17722964 G T SREBF1 Missense_Mutation p.S230Y 0.22 deleterious(0) probably_damaging(0.937) TCGA-IQ-A61I-01 17 27209406 27209406 C G FLOT2 Missense_Mutation p.Q176H 0.06 deleterious(0.02) possibly_damaging(0.722) TCGA-IQ-A61I-01 17 34951448 34951448 C T DHRS11 Silent p.I65I 0.33 TCGA-IQ-A61I-01 17 40490751 40490751 C T STAT3 Missense_Mutation p.G183E 0.40 tolerated(1) benign(0.119) TCGA-IQ-A61I-01 17 43314943 43314943 G A FMNL1 Silent p.A277A 0.31 TCGA-IQ-A61I-01 17 47895328 47895328 C T KAT7 Silent p.F370F 0.35 TCGA-IQ-A61I-01 17 5462999 5462999 C T NLRP1 Silent p.G339G 0.24 TCGA-IQ-A61I-01 17 79279518 79279518 G A LINC00482 RNA 0.33 TCGA-IQ-A61I-01 17 80159775 80159775 G A CCDC57 Missense_Mutation p.R16C 0.08 tolerated(0.12) benign(0.011) TCGA-IQ-A61I-01 18 12697318 12697318 C T CEP76 Missense_Mutation p.E204K 0.32 tolerated(0.22) benign(0.067) TCGA-IQ-A61I-01 18 29056349 29056349 G A DSG3 3'UTR 0.39 TCGA-IQ-A61I-01 18 32822651 32822651 G A ZNF397 Missense_Mutation p.E73K 0.21 deleterious(0.03) possibly_damaging(0.771) TCGA-IQ-A61I-01 18 43221255 43221255 G A SLC14A2 Missense_Mutation p.G358E 0.38 deleterious(0) probably_damaging(1) TCGA-IQ-A61I-01 18 74692412 74692412 G A RP11-862L9.3 5'Flank 0.28 TCGA-IQ-A61I-01 19 10476542 10476542 C T TYK2 Missense_Mutation p.R221Q 0.23 tolerated(0.42) benign(0.006) TCGA-IQ-A61I-01 19 12385844 12385844 C T ZNF44 Missense_Mutation p.M93I 0.15 tolerated(0.14) benign(0.155) TCGA-IQ-A61I-01 19 45515473 45515473 C T RELB Missense_Mutation p.S148L 0.57 deleterious(0.01) possibly_damaging(0.795) TCGA-IQ-A61I-01 19 48543884 48543884 G A CABP5 Silent p.L72L 0.35 TCGA-IQ-A61I-01 19 49224135 49224135 G A RASIP1 Missense_Mutation p.R938C 0.05 deleterious(0) probably_damaging(0.99) TCGA-IQ-A61I-01 19 49404064 49404064 C T NUCB1 Missense_Mutation p.S4F 0.08 deleterious_low_confidence(0) benign(0) TCGA-IQ-A61I-01 19 54673360 54673360 G C TMC4 Missense_Mutation p.S117C 0.26 deleterious(0.04) possibly_damaging(0.625) TCGA-IQ-A61I-01 19 55424082 55424082 C T NCR1 Missense_Mutation p.A253V 0.47 tolerated(0.71) benign(0.081) TCGA-IQ-A61I-01 19 58152857 58152857 C T ZNF211 Missense_Mutation p.H400Y 0.32 deleterious(0) probably_damaging(0.992) TCGA-IQ-A61I-01 19 58982230 58982230 G A ZNF324 Missense_Mutation p.R124K 0.26 tolerated(1) benign(0.004) TCGA-IQ-A61I-01 19 9087590 9087590 C G MUC16 Missense_Mutation p.E1409Q 0.30 unknown(0) TCGA-IQ-A61I-01 19 9721241 9721241 G A ZNF561 Nonsense_Mutation p.Q366* 0.31 TCGA-IQ-A61I-01 1 10364320 10364320 G A KIF1B Intron 0.04 TCGA-IQ-A61I-01 1 10479725 10479725 C G PGD Silent p.L457L 0.04 TCGA-IQ-A61I-01 1 113456480 113456480 G A SLC16A1 3'UTR 0.08 TCGA-IQ-A61I-01 1 12266899 12266899 C T TNFRSF1B Missense_Mutation p.S403F 0.35 deleterious(0.01) benign(0.153) TCGA-IQ-A61I-01 1 161043042 161043042 G A PVRL4 Silent p.L427L 0.11 TCGA-IQ-A61I-01 1 161138212 161138212 C T PPOX Intron 0.25 TCGA-IQ-A61I-01 1 161141519 161141519 C A B4GALT3 3'UTR 0.36 TCGA-IQ-A61I-01 1 161142103 161142103 C A B4GALT3 Missense_Mutation p.M274I 0.29 deleterious(0.01) possibly_damaging(0.716) TCGA-IQ-A61I-01 1 161480645 161480645 C T FCGR2A Missense_Mutation p.S214L 0.20 tolerated(0.3) possibly_damaging(0.585) TCGA-IQ-A61I-01 1 161495032 161495032 G A HSPA6 Missense_Mutation p.R195H 0.20 tolerated_low_confidence(0.08) benign(0.037) TCGA-IQ-A61I-01 1 19166330 19166330 G A TAS1R2 Silent p.F761F 0.24 TCGA-IQ-A61I-01 1 203316865 203316865 C G FMOD Silent p.L178L 0.58 TCGA-IQ-A61I-01 1 208072511 208072511 G A CD34 Missense_Mutation p.S108F 0.22 deleterious(0) benign(0.364) TCGA-IQ-A61I-01 1 228290723 228290723 C T C1orf35 Missense_Mutation p.R41H 0.27 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61I-01 1 23760011 23760011 C T ASAP3 Silent p.Q678Q 0.30 TCGA-IQ-A61I-01 1 245849209 245849209 C G KIF26B Missense_Mutation p.S975C 0.20 tolerated(0.25) unknown(0) TCGA-IQ-A61I-01 1 248366801 248366801 G C OR2M3 Missense_Mutation p.M144I 0.23 tolerated(0.26) benign(0.018) TCGA-IQ-A61I-01 1 248458870 248458870 C T OR2T12 Missense_Mutation p.R4K 0.15 tolerated(0.73) benign(0.028) TCGA-IQ-A61I-01 1 2538439 2538439 G A MMEL1 Missense_Mutation p.A202V 0.35 tolerated(0.12) possibly_damaging(0.754) TCGA-IQ-A61I-01 1 27736222 27736222 C T WASF2 Missense_Mutation p.D435N 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-IQ-A61I-01 1 27874638 27874638 G T AHDC1 Nonsense_Mutation p.S1330* 0.38 TCGA-IQ-A61I-01 1 46496348 46496348 C T MAST2 Silent p.L875L 0.28 TCGA-IQ-A61I-01 1 53676457 53676457 G A CPT2 Missense_Mutation p.E371K 0.33 deleterious(0) probably_damaging(1) TCGA-IQ-A61I-01 1 5925255 5925255 G A NPHP4 Silent p.V1241V 0.42 TCGA-IQ-A61I-01 1 62913122 62913122 C T USP1 Nonsense_Mutation p.Q454* 0.36 TCGA-IQ-A61I-01 1 71544247 71544247 C T ZRANB2 Silent p.E37E 0.27 TCGA-IQ-A61I-01 20 18448187 18448187 G A POLR3F Missense_Mutation p.A13T 0.06 tolerated(0.41) benign(0.001) TCGA-IQ-A61I-01 20 34828442 34828442 G C AAR2 Missense_Mutation p.E218Q 0.24 tolerated(0.25) benign(0.189) TCGA-IQ-A61I-01 20 55099835 55099835 G C FAM209A 5'UTR 0.05 TCGA-IQ-A61I-01 21 38568201 38568201 C G TTC3 Missense_Mutation p.L1815V 0.42 tolerated(0.63) benign(0.001) TCGA-IQ-A61I-01 22 20074123 20074123 G A DGCR8 Missense_Mutation p.E213K 0.26 deleterious(0.02) benign(0.064) TCGA-IQ-A61I-01 22 29693822 29693822 G C EWSR1 Missense_Mutation p.D439H 0.32 deleterious(0) unknown(0) TCGA-IQ-A61I-01 22 36013344 36013344 C T MB 5'UTR 0.50 TCGA-IQ-A61I-01 22 38121171 38121171 C G TRIOBP Missense_Mutation p.Q870E 0.27 deleterious_low_confidence(0) benign(0.404) TCGA-IQ-A61I-01 22 38121380 38121380 C T TRIOBP Silent p.L939L 0.24 TCGA-IQ-A61I-01 22 39530551 39530551 G C CBX7 Silent p.L151L 0.21 TCGA-IQ-A61I-01 22 45574294 45574294 G A NUP50 Silent p.V172V 0.21 TCGA-IQ-A61I-01 22 45595798 45595798 G A KIAA0930 Missense_Mutation p.S329L 0.30 deleterious(0) probably_damaging(0.999) TCGA-IQ-A61I-01 2 103340312 103340312 C G MFSD9 Missense_Mutation p.E162Q 0.25 tolerated(0.08) possibly_damaging(0.688) TCGA-IQ-A61I-01 2 109367852 109367852 C T RANBP2 Missense_Mutation p.S469L 0.04 deleterious(0) benign(0.066) TCGA-IQ-A61I-01 2 135744048 135744048 C G MAP3K19 Missense_Mutation p.Q798H 0.10 deleterious(0.02) benign(0.086) TCGA-IQ-A61I-01 2 170349481 170349481 G A BBS5 Missense_Mutation p.D162N 0.27 tolerated(0.68) probably_damaging(0.989) TCGA-IQ-A61I-01 2 220098519 220098519 C T ANKZF1 Missense_Mutation p.S301F 0.34 tolerated(0.31) benign(0.184) TCGA-IQ-A61I-01 2 241404610 241404610 C T GPC1 Silent p.N417N 0.28 TCGA-IQ-A61I-01 2 241492400 241492400 G A ANKMY1 Silent p.F48F 0.33 TCGA-IQ-A61I-01 2 36775878 36775878 G A CRIM1 3'UTR 0.28 TCGA-IQ-A61I-01 2 62067397 62067397 C T FAM161A Missense_Mutation p.E248K 0.26 deleterious(0) probably_damaging(1) TCGA-IQ-A61I-01 2 71840496 71840496 G A DYSF Missense_Mutation p.V1474M 0.48 deleterious(0) probably_damaging(0.955) TCGA-IQ-A61I-01 2 86292681 86292681 C T POLR1A Intron 0.40 TCGA-IQ-A61I-01 3 120469577 120469577 C T GTF2E1 Nonsense_Mutation p.R60* 0.07 TCGA-IQ-A61I-01 3 121340544 121340544 G A FBXO40 Missense_Mutation p.A90T 0.31 deleterious(0) probably_damaging(1) TCGA-IQ-A61I-01 3 128848794 128848794 G A ISY1 3'UTR 0.25 TCGA-IQ-A61I-01 3 148459829 148459829 C T AGTR1 Missense_Mutation p.T336M 0.51 tolerated(0.06) benign(0.005) TCGA-IQ-A61I-01 3 47312724 47312724 C T KIF9 Intron 0.25 TCGA-IQ-A61I-01 3 52548442 52548442 G A STAB1 Missense_Mutation p.R1203Q 0.08 tolerated(0.25) benign(0.023) TCGA-IQ-A61I-01 4 119148066 119148066 G A NDST3 Missense_Mutation p.R583K 0.32 tolerated(1) benign(0) TCGA-IQ-A61I-01 4 16258189 16258189 C T TAPT1-AS1 RNA 0.27 TCGA-IQ-A61I-01 4 36230658 36230658 G A ARAP2 Missense_Mutation p.R151C 0.46 tolerated_low_confidence(0.08) benign(0.001) TCGA-IQ-A61I-01 4 38799112 38799112 G A TLR1 Silent p.I447I 0.37 TCGA-IQ-A61I-01 4 54257190 54257190 G A FIP1L1 Missense_Mutation p.D174N 0.23 deleterious(0) probably_damaging(1) TCGA-IQ-A61I-01 4 77817474 77817474 G A SOWAHB Missense_Mutation p.S510F 0.36 deleterious(0) possibly_damaging(0.485) TCGA-IQ-A61I-01 4 79366851 79366851 C G FRAS1 Missense_Mutation p.I1947M 0.05 benign(0.04) TCGA-IQ-A61I-01 5 127595087 127595087 C T FBN2 3'UTR 0.29 TCGA-IQ-A61I-01 5 128324312 128324312 G A SLC27A6 Silent p.V235V 0.33 TCGA-IQ-A61I-01 5 130987593 130987593 C T FNIP1 Missense_Mutation p.D1070N 0.29 tolerated(0.07) possibly_damaging(0.836) TCGA-IQ-A61I-01 5 130987601 130987601 C T FNIP1 Missense_Mutation p.R1067Q 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-IQ-A61I-01 5 140203272 140203272 G A PCDHA5 Missense_Mutation p.E638K 0.12 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-IQ-A61I-01 5 140558805 140558805 C T PCDHB8 Missense_Mutation p.S397F 0.04 deleterious_low_confidence(0) possibly_damaging(0.639) TCGA-IQ-A61I-01 5 140559795 140559795 C G PCDHB8 Nonsense_Mutation p.S727* 0.04 TCGA-IQ-A61I-01 5 145647224 145647224 C G RBM27 Missense_Mutation p.P782A 0.22 tolerated(0.3) benign(0) TCGA-IQ-A61I-01 5 154268973 154268973 C T GEMIN5 Missense_Mutation p.E1423K 0.27 tolerated(0.34) benign(0.005) TCGA-IQ-A61I-01 5 156918889 156918889 G A ADAM19 Missense_Mutation p.S647F 0.29 deleterious(0) probably_damaging(0.991) TCGA-IQ-A61I-01 6 131571736 131571736 C G AKAP7 Intron 0.09 TCGA-IQ-A61I-01 7 135272732 135272732 C G NUP205 Missense_Mutation p.Q489E 0.34 tolerated(0.17) benign(0.375) TCGA-IQ-A61I-01 7 141955354 141955354 C T PRSS58 Splice_Site p.X60_splice 0.26 TCGA-IQ-A61I-01 7 31682734 31682734 G C CCDC129 Missense_Mutation p.E610Q 0.04 tolerated(0.05) possibly_damaging(0.548) TCGA-IQ-A61I-01 7 76140988 76140988 C G UPK3B Missense_Mutation p.Q139E 0.25 tolerated_low_confidence(0.31) benign(0.028) TCGA-IQ-A61I-01 7 91753166 91753166 G A CYP51A1 Missense_Mutation p.R258C 0.32 deleterious(0.01) benign(0.044) TCGA-IQ-A61I-01 7 95045542 95045542 G A PON2 Intron 0.25 TCGA-IQ-A61I-01 8 144885676 144885676 C T SCRIB Silent p.V1160V 0.48 TCGA-IQ-A61I-01 8 2855702 2855702 G A CSMD1 Silent p.I2736I 0.09 TCGA-IQ-A61I-01 8 39142401 39142401 G A ADAM32 3'UTR 0.27 TCGA-IQ-A61I-01 9 100308588 100308588 G A TMOD1 Missense_Mutation p.R81Q 0.08 tolerated(0.06) possibly_damaging(0.517) TCGA-IQ-A61I-01 9 119976943 119976943 G A ASTN2 Missense_Mutation p.R237C 0.46 deleterious_low_confidence(0) unknown(0) TCGA-IQ-A61I-01 9 123631545 123631545 A C PHF19 Missense_Mutation p.S177A 0.40 deleterious(0.05) benign(0.08) TCGA-IQ-A61I-01 9 131339461 131339461 C G SPTAN1 Missense_Mutation p.S280C 0.27 deleterious(0) probably_damaging(0.987) TCGA-IQ-A61I-01 9 131339679 131339679 C T SPTAN1 Silent p.L327L 0.37 TCGA-IQ-A61I-01 9 134351533 134351533 G T PRRC2B Missense_Mutation p.W1339C 0.27 tolerated(0.11) probably_damaging(0.999) TCGA-IQ-A61I-01 9 139734268 139734268 C T RABL6 Silent p.L628L 0.15 TCGA-IQ-A61I-01 9 139734271 139734271 C T RABL6 Silent p.F629F 0.17 TCGA-IQ-A61I-01 9 139743871 139743871 G A PHPT1 5'UTR 0.25 TCGA-IQ-A61I-01 9 139820216 139820216 C T TRAF2 Nonsense_Mutation p.Q457* 0.28 TCGA-IQ-A61I-01 9 2718734 2718734 G A KCNV2 Missense_Mutation p.R332H 0.39 deleterious(0.02) probably_damaging(0.934) TCGA-IQ-A61I-01 9 32635509 32635509 C T TAF1L Silent p.S23S 0.05 TCGA-IQ-A61I-01 9 5929142 5929142 C T KIAA2026 Silent p.R800R 0.20 TCGA-IQ-A61I-01 9 88270061 88270061 C A AGTPBP1 Nonsense_Mutation p.E322* 0.17 TCGA-IQ-A61I-01 X 107400293 107400293 C T COL4A6 Silent p.T1671T 0.42 TCGA-IQ-A61I-01 X 30577888 30577888 C T CXorf21 Silent p.E195E 0.42 TCGA-IQ-A61I-01 X 31227742 31227742 C T DMD Missense_Mutation p.D3146N 0.31 possibly_damaging(0.584) TCGA-IQ-A61I-01 X 40572268 40572268 C T MED14 Missense_Mutation p.E227K 0.32 tolerated(0.11) benign(0.164) TCGA-IQ-A61I-01 X 53455326 53455326 C T RIBC1 Missense_Mutation p.R99W 0.50 deleterious(0.05) benign(0.14) TCGA-IQ-A61I-01 X 75004819 75004819 C G MAGEE2 Missense_Mutation p.R23T 0.35 tolerated_low_confidence(0.21) benign(0.015) TCGA-IQ-A61I-01 X 80377076 80377076 G T HMGN5 5'UTR 0.29 TCGA-IQ-A61J-01 11 102449821 102449821 C T MMP20 Missense_Mutation p.E434K 0.41 tolerated(0.27) benign(0.113) TCGA-IQ-A61J-01 11 64374634 64374634 G A NRXN2 3'UTR 0.54 TCGA-IQ-A61J-01 11 73105607 73105607 G A RELT Missense_Mutation p.G292S 0.07 deleterious(0) probably_damaging(1) TCGA-IQ-A61J-01 12 14976229 14976229 G A C12orf60 Silent p.T120T 0.19 TCGA-IQ-A61J-01 13 27259991 27259991 C T WASF3 3'UTR 0.07 TCGA-IQ-A61J-01 13 47316002 47316002 A G LRCH1 3'UTR 0.24 TCGA-IQ-A61J-01 13 67801135 67801135 C A PCDH9 Nonsense_Mutation p.E480* 0.21 TCGA-IQ-A61J-01 14 52734574 52734574 G A PTGDR Silent p.V14V 0.38 TCGA-IQ-A61J-01 15 62316042 62316042 G A VPS13C Missense_Mutation p.R151C 0.11 deleterious(0.03) probably_damaging(0.932) TCGA-IQ-A61J-01 15 85383935 85383935 T G ALPK3 Silent p.T677T 0.13 TCGA-IQ-A61J-01 16 1270859 1270859 G T CACNA1H Missense_Mutation p.E2309D 0.23 tolerated_low_confidence(0.14) possibly_damaging(0.824) TCGA-IQ-A61J-01 16 4511769 4511769 G A NMRAL1 3'UTR 0.07 TCGA-IQ-A61J-01 16 8722952 8722952 G A METTL22 Missense_Mutation p.D167N 0.19 tolerated(0.33) benign(0.016) TCGA-IQ-A61J-01 16 88945792 88945792 C A CBFA2T3 Silent p.A516A 0.08 TCGA-IQ-A61J-01 16 9856968 9856968 G A GRIN2A 3'UTR 0.11 TCGA-IQ-A61J-01 17 10428832 10428832 C G MYH2 Missense_Mutation p.K1491N 0.07 deleterious(0) probably_damaging(0.967) TCGA-IQ-A61J-01 17 59489575 59489575 C G C17orf82 Missense_Mutation p.P80R 0.19 deleterious_low_confidence(0) benign(0.026) TCGA-IQ-A61J-01 17 6350972 6350972 C T FAM64A Missense_Mutation p.R162C 0.09 tolerated(0.14) benign(0.01) TCGA-IQ-A61J-01 17 7579311 7579311 C A TP53 Splice_Site p.X125_splice 0.36 TCGA-IQ-A61J-01 18 56204171 56204171 G T ALPK2 Missense_Mutation p.P1083Q 0.20 tolerated(0.33) benign(0.005) TCGA-IQ-A61J-01 19 22157111 22157111 G T ZNF208 Nonsense_Mutation p.S242* 0.18 TCGA-IQ-A61J-01 19 2732937 2732937 C A SLC39A3 Missense_Mutation p.A253S 0.11 tolerated(0.25) benign(0.098) TCGA-IQ-A61J-01 19 55361943 55361943 G A KIR3DL2 Missense_Mutation p.V5I 0.32 tolerated(0.3) benign(0.1) TCGA-IQ-A61J-01 1 107979367 107979367 G A NTNG1 Missense_Mutation p.G446R 0.16 deleterious(0) unknown(0) TCGA-IQ-A61J-01 1 173822554 173822554 G A DARS2 Missense_Mutation p.R471H 0.17 deleterious(0.03) probably_damaging(0.978) TCGA-IQ-A61J-01 1 236557724 236557724 G A EDARADD 5'UTR 0.10 TCGA-IQ-A61J-01 20 39788394 39788394 G T PLCG1 Silent p.L122L 0.13 TCGA-IQ-A61J-01 22 22599470 22599470 C T VPREB1 Silent p.S53S 0.19 TCGA-IQ-A61J-01 22 46790148 46790148 G A CELSR1 Missense_Mutation p.P1952L 0.06 deleterious(0) possibly_damaging(0.895) TCGA-IQ-A61J-01 2 12880670 12880670 C T TRIB2 Missense_Mutation p.S261F 0.18 deleterious(0.02) possibly_damaging(0.842) TCGA-IQ-A61J-01 2 149247884 149247886 TCT - MBD5 In_Frame_Del p.L1329del 0.15 TCGA-IQ-A61J-01 2 152500621 152500621 C T NEB Missense_Mutation p.R2556H 0.20 probably_damaging(0.996) TCGA-IQ-A61J-01 2 242815330 242815330 C T CXXC11 Silent p.Y541Y 0.18 TCGA-IQ-A61J-01 2 5833543 5833543 C T SOX11 Silent p.D230D 0.15 TCGA-IQ-A61J-01 3 164697140 164697140 A T SI 3'UTR 0.36 TCGA-IQ-A61J-01 3 30729917 30729917 G T TGFBR2 Nonsense_Mutation p.E505* 0.27 TCGA-IQ-A61J-01 3 39225527 39225527 C T XIRP1 Missense_Mutation p.G1804R 0.23 tolerated(0.34) benign(0.003) TCGA-IQ-A61J-01 3 98188932 98188932 C T OR5K1 Missense_Mutation p.S171L 0.16 deleterious(0.01) benign(0.018) TCGA-IQ-A61J-01 3 98188962 98188962 T C OR5K1 Missense_Mutation p.I181T 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-IQ-A61J-01 4 57180310 57180310 G A KIAA1211 Silent p.P214P 0.36 TCGA-IQ-A61J-01 5 140798045 140798045 G A PCDHGB7 Missense_Mutation p.A207T 0.42 tolerated(0.45) benign(0.006) TCGA-IQ-A61J-01 5 176935363 176935363 C T DOK3 Missense_Mutation p.A139T 0.09 deleterious(0.01) benign(0.221) TCGA-IQ-A61J-01 5 69372363 69372363 C A SMN2 Missense_Mutation p.Q284K 0.25 tolerated(0.32) benign(0) TCGA-IQ-A61J-01 6 165715617 165715617 T C C6orf118 Missense_Mutation p.N65S 0.18 deleterious(0) probably_damaging(1) TCGA-IQ-A61J-01 6 38840417 38840417 G A DNAH8 Missense_Mutation p.G2149R 0.17 probably_damaging(0.993) TCGA-IQ-A61J-01 7 131883335 131883335 G A PLXNA4 Silent p.L883L 0.23 TCGA-IQ-A61J-01 7 2946453 2946453 G A CARD11 Missense_Mutation p.T1095M 0.39 tolerated(0.08) benign(0.336) TCGA-IQ-A61J-01 7 44005468 44005468 G A RP5-1165K10.2 Intron 0.25 TCGA-IQ-A61J-01 7 618913 618913 C T PRKAR1B Missense_Mutation p.D291N 0.22 tolerated(0.09) possibly_damaging(0.576) TCGA-IQ-A61J-01 9 133917079 133917079 C T LAMC3 Missense_Mutation p.R447C 0.30 deleterious(0.01) probably_damaging(0.932) TCGA-IQ-A61J-01 9 73151480 73151480 G T TRPM3 Missense_Mutation p.L1505I 0.10 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-IQ-A61J-01 X 153594745 153594745 G - FLNA Frame_Shift_Del p.Q387Kfs*33 0.34 TCGA-IQ-A61J-01 X 91134209 91134209 C T PCDH11X Silent p.S990S 0.38 TCGA-IQ-A61K-01 10 128973711 128973711 C T FAM196A Missense_Mutation p.E317K 0.27 tolerated(0.09) benign(0.331) TCGA-IQ-A61K-01 11 1266021 1266021 C A MUC5B Silent p.T2637T 0.37 TCGA-IQ-A61K-01 11 17408995 17408995 A G KCNJ11 Missense_Mutation p.I215T 0.25 deleterious(0) probably_damaging(0.948) TCGA-IQ-A61K-01 11 36615501 36615501 C T RAG2 Missense_Mutation p.R73H 0.35 deleterious(0) possibly_damaging(0.708) TCGA-IQ-A61K-01 11 379542 379542 G A B4GALNT4 Missense_Mutation p.V777I 0.19 tolerated(0.45) unknown(0) TCGA-IQ-A61K-01 11 57193693 57193693 G T SLC43A3 5'UTR 0.35 TCGA-IQ-A61K-01 11 59612919 59612919 C T GIF Nonsense_Mutation p.W3* 0.15 TCGA-IQ-A61K-01 11 63277960 63277960 A G LGALS12 Missense_Mutation p.Y196C 0.14 tolerated(0.1) probably_damaging(0.959) TCGA-IQ-A61K-01 11 65410029 65410029 G A SIPA1 Silent p.P301P 0.17 TCGA-IQ-A61K-01 11 6591617 6591617 C T DNHD1 Missense_Mutation p.P4366S 0.17 probably_damaging(0.954) TCGA-IQ-A61K-01 11 67223619 67223619 G T CABP4 Intron 0.12 TCGA-IQ-A61K-01 11 6789497 6789497 T C OR2AG2 Missense_Mutation p.N231S 0.18 tolerated(0.54) benign(0.034) TCGA-IQ-A61K-01 12 101017504 101017504 G A GAS2L3 Silent p.S307S 0.24 TCGA-IQ-A61K-01 12 117768559 117768559 G A NOS1 Missense_Mutation p.H106Y 0.23 tolerated_low_confidence(0.14) possibly_damaging(0.551) TCGA-IQ-A61K-01 12 52986206 52986206 T C KRT72 Missense_Mutation p.K258E 0.22 tolerated(0.1) possibly_damaging(0.545) TCGA-IQ-A61K-01 12 58124354 58124354 G A AGAP2 Silent p.S784S 0.20 TCGA-IQ-A61K-01 12 81528729 81528729 C G ACSS3 Silent p.L197L 0.26 TCGA-IQ-A61K-01 13 61987983 61987983 G T PCDH20 Silent p.G83G 0.18 TCGA-IQ-A61K-01 13 77791957 77791989 GTTTTAAAAATTCCTTACAGAAAAACTTCCAAA - MYCBP2 Splice_Site p.X977_splice 0.11 TCGA-IQ-A61K-01 14 31792926 31792926 C T HEATR5A Missense_Mutation p.R1211H 0.24 tolerated(0.14) benign(0) TCGA-IQ-A61K-01 14 77236375 77236375 C T VASH1 Missense_Mutation p.R127C 0.22 deleterious(0.01) possibly_damaging(0.878) TCGA-IQ-A61K-01 15 42144411 42144411 C T SPTBN5 Missense_Mutation p.G3518E 0.26 benign(0.013) TCGA-IQ-A61K-01 15 44865722 44865722 G A SPG11 Intron 0.12 TCGA-IQ-A61K-01 17 33771991 33771991 A C SLFN13 Missense_Mutation p.F237V 0.18 deleterious(0) probably_damaging(1) TCGA-IQ-A61K-01 17 55027784 55027784 C A COIL Missense_Mutation p.E273D 0.21 tolerated(0.06) possibly_damaging(0.716) TCGA-IQ-A61K-01 17 72613477 72613477 C T CD300E Silent p.T56T 0.19 TCGA-IQ-A61K-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.62 tolerated(0.11) benign(0.308) TCGA-IQ-A61K-01 19 35450454 35450454 C T ZNF792 Missense_Mutation p.G102D 0.19 tolerated(1) benign(0.215) TCGA-IQ-A61K-01 19 38958446 38958446 G A RYR1 Silent p.G1125G 0.21 TCGA-IQ-A61K-01 19 43430085 43430085 C T PSG7 Silent p.P361P 0.16 TCGA-IQ-A61K-01 19 51466567 51466567 T C KLK6 Missense_Mutation p.T146A 0.17 deleterious(0.01) possibly_damaging(0.467) TCGA-IQ-A61K-01 19 52869101 52869101 A G ZNF610 Missense_Mutation p.H157R 0.19 tolerated(0.08) benign(0.008) TCGA-IQ-A61K-01 19 841005 841005 C A PRTN3 5'UTR 0.55 TCGA-IQ-A61K-01 19 8841485 8841485 C A OR2Z1 Missense_Mutation p.A32D 0.21 deleterious(0.01) possibly_damaging(0.556) TCGA-IQ-A61K-01 1 104112380 104112380 C T AMY2B Intron 0.24 TCGA-IQ-A61K-01 1 120057173 120057174 CT - HSD3B1 Frame_Shift_Del p.Y344Qfs*32 0.16 TCGA-IQ-A61K-01 1 12409370 12409370 G A VPS13D Missense_Mutation p.E3124K 0.16 possibly_damaging(0.452) TCGA-IQ-A61K-01 1 12887326 12887326 T C PRAMEF11 Missense_Mutation p.I177M 0.19 deleterious(0.03) benign(0.218) TCGA-IQ-A61K-01 1 150460440 150460440 C G TARS2 Missense_Mutation p.P58R 0.24 tolerated(0.37) benign(0.001) TCGA-IQ-A61K-01 1 155240608 155240608 C T CLK2 Missense_Mutation p.R54H 0.20 deleterious(0.03) unknown(0) TCGA-IQ-A61K-01 1 156714066 156714068 CTT - HDGF In_Frame_Del p.K142del 0.23 TCGA-IQ-A61K-01 1 166985521 166985521 C T MAEL Missense_Mutation p.A303V 0.14 tolerated(0.05) possibly_damaging(0.532) TCGA-IQ-A61K-01 1 23418370 23418370 G A LUZP1 Silent p.S795S 0.24 TCGA-IQ-A61K-01 1 243449654 243449654 A C SDCCAG8 Missense_Mutation p.Q167H 0.21 tolerated(0.1) possibly_damaging(0.789) TCGA-IQ-A61K-01 1 41514481 41514481 C T SCMH1 Missense_Mutation p.G386E 0.20 deleterious(0) probably_damaging(1) TCGA-IQ-A61K-01 1 5950982 5950982 G A NPHP4 Silent p.D750D 0.10 TCGA-IQ-A61K-01 20 39831887 39831887 G A ZHX3 Missense_Mutation p.A557V 0.15 tolerated(0.08) benign(0.009) TCGA-IQ-A61K-01 20 5528493 5528493 T G GPCPD1 Silent p.I611I 0.14 TCGA-IQ-A61K-01 20 62599268 62599268 G A ZNF512B Silent p.L12L 0.40 TCGA-IQ-A61K-01 21 47571600 47571600 T G FTCD Missense_Mutation p.S170R 0.25 tolerated(0.76) benign(0.016) TCGA-IQ-A61K-01 22 34000498 34000498 G A LARGE Nonsense_Mutation p.Q180* 0.29 TCGA-IQ-A61K-01 2 105915092 105915092 C T TGFBRAP1 Silent p.A253A 0.21 TCGA-IQ-A61K-01 2 141665476 141665476 G A LRP1B Missense_Mutation p.P1164S 0.19 benign(0.043) TCGA-IQ-A61K-01 2 15696908 15696908 T C NBAS Missense_Mutation p.S70G 0.79 deleterious(0.01) possibly_damaging(0.5) TCGA-IQ-A61K-01 2 174123463 174123463 G A MLTK Missense_Mutation p.D466N 0.30 tolerated(0.12) probably_damaging(0.929) TCGA-IQ-A61K-01 2 193044385 193044385 A G TMEFF2 Intron 0.31 TCGA-IQ-A61K-01 2 240969703 240969703 G A OR6B2 Silent p.I48I 0.41 TCGA-IQ-A61K-01 2 80620353 80620353 A T CTNNA2 Missense_Mutation p.K358N 0.05 tolerated(0.33) benign(0.173) TCGA-IQ-A61K-01 3 124728587 124728587 G A HEG1 Missense_Mutation p.P1052L 0.29 tolerated(0.08) probably_damaging(0.932) TCGA-IQ-A61K-01 3 133306718 133306718 G A CDV3 Intron 0.18 TCGA-IQ-A61K-01 3 48631047 48631048 - GTTG COL7A1 Frame_Shift_Ins p.T117Qfs*13 0.26 TCGA-IQ-A61K-01 4 123275098 123275098 G A KIAA1109 Missense_Mutation p.R4744H 0.22 possibly_damaging(0.819) TCGA-IQ-A61K-01 4 20618684 20618684 T C SLIT2 Silent p.C1333C 0.16 TCGA-IQ-A61K-01 4 23803958 23803958 C T PPARGC1A Missense_Mutation p.R677H 0.22 deleterious(0) unknown(0) TCGA-IQ-A61K-01 4 80246587 80246587 G A NAA11 Missense_Mutation p.R149W 0.22 deleterious(0.02) possibly_damaging(0.836) TCGA-IQ-A61K-01 5 135508250 135508250 T C SMAD5 Silent p.D301D 0.18 TCGA-IQ-A61K-01 5 140229463 140229463 G A PCDHA9 Silent p.T461T 0.23 TCGA-IQ-A61K-01 5 140731531 140731531 C T PCDHGB1 Silent p.S568S 0.15 TCGA-IQ-A61K-01 6 118596639 118596639 G A SLC35F1 Missense_Mutation p.G219R 0.24 deleterious(0) probably_damaging(0.997) TCGA-IQ-A61K-01 6 33282955 33282955 G A ZBTB22 Missense_Mutation p.T580I 0.69 tolerated_low_confidence(0.07) benign(0.01) TCGA-IQ-A61K-01 6 64401688 64401688 C T PHF3 Missense_Mutation p.L751F 0.20 deleterious(0) probably_damaging(1) TCGA-IQ-A61K-01 7 150440107 150440107 A G GIMAP5 Missense_Mutation p.I294V 0.14 tolerated(0.12) benign(0.035) TCGA-IQ-A61K-01 7 2472569 2472569 G T CHST12 Nonsense_Mutation p.E99* 0.20 TCGA-IQ-A61K-01 7 82544172 82544172 G T PCLO Missense_Mutation p.A4377E 0.17 unknown(0) TCGA-IQ-A61K-01 7 87037495 87037495 C T ABCB4 Missense_Mutation p.R1046Q 0.19 deleterious(0) probably_damaging(0.918) TCGA-IQ-A61K-01 7 97833262 97833262 G A LMTK2 Missense_Mutation p.G1416D 0.31 deleterious(0) probably_damaging(0.996) TCGA-IQ-A61K-01 8 100990290 100990290 C A RGS22 Missense_Mutation p.G1125V 0.23 deleterious(0.02) probably_damaging(0.988) TCGA-IQ-A61K-01 8 101178202 101178203 - TA SPAG1 Splice_Site p.X100_splice 0.25 TCGA-IQ-A61K-01 8 71495489 71495489 G A TRAM1 Nonsense_Mutation p.R321* 0.19 TCGA-IQ-A61K-01 8 82437355 82437355 C T FABP12 Missense_Mutation p.E117K 0.30 tolerated(0.26) probably_damaging(0.947) TCGA-IQ-A61K-01 9 36121659 36121659 G A RECK Missense_Mutation p.V890I 0.21 deleterious(0.03) possibly_damaging(0.797) TCGA-IQ-A61K-01 X 106844589 106844589 C T FRMPD3 Missense_Mutation p.A1140V 0.13 tolerated_low_confidence(0.21) benign(0.003) TCGA-IQ-A61K-01 X 135288733 135288733 G A FHL1 Missense_Mutation p.G48S 0.18 tolerated(0.2) benign(0.078) TCGA-IQ-A61K-01 X 151129820 151129820 C G GABRE Missense_Mutation p.G194A 0.18 tolerated(0.14) benign(0.374) TCGA-IQ-A61K-01 X 21675044 21675044 C T KLHL34 Missense_Mutation p.R288H 0.09 tolerated(0.59) benign(0.014) TCGA-IQ-A61K-01 X 41088843 41088843 G A USP9X Silent p.K2414K 0.20 TCGA-IQ-A61L-01 10 121429589 121429589 C T BAG3 Missense_Mutation p.S136L 0.10 deleterious(0) probably_damaging(0.93) TCGA-IQ-A61L-01 10 129902151 129902151 C G MKI67 Missense_Mutation p.K2651N 0.13 tolerated(0.09) probably_damaging(0.984) TCGA-IQ-A61L-01 10 31812948 31812948 C A ZEB1 Silent p.R898R 0.43 TCGA-IQ-A61L-01 10 88211793 88211793 G A WAPAL Silent p.I1015I 0.10 TCGA-IQ-A61L-01 11 100998717 100998717 G A PGR Missense_Mutation p.A362V 0.15 tolerated_low_confidence(0.14) benign(0.137) TCGA-IQ-A61L-01 11 118307581 118307581 C G KMT2A Silent p.V118V 0.18 TCGA-IQ-A61L-01 11 124857973 124857973 C T CCDC15 Silent p.S617S 0.13 TCGA-IQ-A61L-01 11 62384033 62384033 A T B3GAT3 Missense_Mutation p.L285Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-IQ-A61L-01 11 64678549 64678549 C T ATG2A Missense_Mutation p.R476Q 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-IQ-A61L-01 12 112648043 112648043 C T HECTD4 Missense_Mutation p.R2402Q 0.22 probably_damaging(0.949) TCGA-IQ-A61L-01 12 33031091 33031091 G A PKP2 Silent p.L241L 0.15 TCGA-IQ-A61L-01 12 49087931 49087931 C G CCNT1 Missense_Mutation p.A356P 0.26 tolerated(0.12) possibly_damaging(0.762) TCGA-IQ-A61L-01 12 9360941 9360941 G T PZP 5'UTR 0.20 TCGA-IQ-A61L-01 12 9360942 9360942 A T PZP 5'UTR 0.21 TCGA-IQ-A61L-01 13 110435125 110435125 C T IRS2 Silent p.K1092K 0.35 TCGA-IQ-A61L-01 13 39430380 39430380 T A FREM2 Missense_Mutation p.I2348K 0.07 deleterious(0.01) benign(0.203) TCGA-IQ-A61L-01 14 21873401 21873401 G A CHD8 Missense_Mutation p.R1092C 0.39 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61L-01 14 24658622 24658622 C G TM9SF1 Nonstop_Mutation p.*607Sext*26 0.09 TCGA-IQ-A61L-01 14 75278337 75278337 G A YLPM1 Missense_Mutation p.R1748Q 0.19 probably_damaging(0.948) TCGA-IQ-A61L-01 15 101569222 101569222 G A LRRK1 Silent p.L916L 0.30 TCGA-IQ-A61L-01 15 40937256 40937257 - A CASC5 Frame_Shift_Ins p.M1982Nfs*6 0.19 TCGA-IQ-A61L-01 16 1265004 1265004 C T CACNA1H Silent p.Y1654Y 0.34 TCGA-IQ-A61L-01 16 57714215 57714228 GAGGTCAGACCTGA - GPR97 Frame_Shift_Del p.E236Gfs*7 0.17 TCGA-IQ-A61L-01 16 70603936 70603936 G A SF3B3 Missense_Mutation p.G1098R 0.29 deleterious(0) probably_damaging(1) TCGA-IQ-A61L-01 16 85946766 85946766 C G IRF8 Missense_Mutation p.I159M 0.08 tolerated(0.22) benign(0.068) TCGA-IQ-A61L-01 17 18035781 18035781 G A MYO15A Silent p.R1407R 0.34 TCGA-IQ-A61L-01 17 18166073 18166073 C T MIEF2 Silent p.S24S 0.22 TCGA-IQ-A61L-01 17 41170802 41170802 C T VAT1 Silent p.V134V 0.10 TCGA-IQ-A61L-01 17 43163883 43163883 C G NMT1 Missense_Mutation p.S83C 0.10 deleterious(0) possibly_damaging(0.572) TCGA-IQ-A61L-01 17 43163902 43163902 C G NMT1 Missense_Mutation p.I89M 0.15 tolerated(0.13) benign(0.004) TCGA-IQ-A61L-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.34 deleterious(0) probably_damaging(1) TCGA-IQ-A61L-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.22 deleterious(0) probably_damaging(1) TCGA-IQ-A61L-01 18 56033442 56033442 T A NEDD4L Missense_Mutation p.L682H 0.31 deleterious(0) probably_damaging(1) TCGA-IQ-A61L-01 18 56184211 56184211 G A ALPK2 Missense_Mutation p.H1957Y 0.19 deleterious(0) probably_damaging(1) TCGA-IQ-A61L-01 19 12638522 12638522 G C ZNF564 Missense_Mutation p.Q134E 0.15 deleterious(0.04) possibly_damaging(0.626) TCGA-IQ-A61L-01 19 15538235 15538235 G A WIZ Silent p.G213G 0.20 TCGA-IQ-A61L-01 19 41932148 41932148 C T B3GNT8 Missense_Mutation p.R179Q 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-IQ-A61L-01 19 43237035 43237035 G C PSG3 Missense_Mutation p.L204V 0.32 deleterious(0.03) benign(0.362) TCGA-IQ-A61L-01 19 45822923 45822923 C T CKM Missense_Mutation p.E17K 0.17 tolerated(0.17) benign(0.005) TCGA-IQ-A61L-01 19 45867709 45867709 C T ERCC2 Missense_Mutation p.V231M 0.14 deleterious(0) probably_damaging(0.983) TCGA-IQ-A61L-01 19 55378164 55378164 C A KIR3DL2 Nonsense_Mutation p.S449* 0.20 TCGA-IQ-A61L-01 19 55494409 55494409 G A NLRP2 Missense_Mutation p.R448Q 0.14 tolerated(0.15) benign(0.001) TCGA-IQ-A61L-01 1 10067753 10067753 G A RBP7 Missense_Mutation p.V67I 0.10 tolerated(0.3) benign(0.009) TCGA-IQ-A61L-01 1 150601956 150601956 G C ENSA 5'UTR 0.31 TCGA-IQ-A61L-01 1 158325766 158325766 G A CD1E Missense_Mutation p.V259I 0.15 tolerated(0.96) benign(0.002) TCGA-IQ-A61L-01 1 183077530 183077530 T G LAMC1 Silent p.A281A 0.20 TCGA-IQ-A61L-01 1 28861634 28861634 G A RCC1 Missense_Mutation p.V203M 0.28 tolerated(0.12) benign(0.002) TCGA-IQ-A61L-01 1 54871676 54871676 A C SSBP3 Missense_Mutation p.F2L 0.56 deleterious(0) possibly_damaging(0.522) TCGA-IQ-A61L-01 20 30432338 30432338 G A FOXS1 3'UTR 0.10 TCGA-IQ-A61L-01 20 33444658 33444658 G A GGT7 Silent p.F351F 0.14 TCGA-IQ-A61L-01 20 44682326 44682326 C T SLC12A5 Missense_Mutation p.A909V 0.48 deleterious(0) probably_damaging(0.962) TCGA-IQ-A61L-01 20 56227195 56227195 G A PMEPA1 Missense_Mutation p.R260W 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-IQ-A61L-01 21 37618699 37618699 G C DOPEY2 Missense_Mutation p.R1474T 0.12 tolerated(0.4) benign(0.003) TCGA-IQ-A61L-01 22 26165205 26165205 G A MYO18B Missense_Mutation p.R441H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.595) TCGA-IQ-A61L-01 22 31500330 31500330 G A SMTN Missense_Mutation p.E901K 0.15 deleterious(0) possibly_damaging(0.824) TCGA-IQ-A61L-01 22 37898681 37898681 G A CARD10 Missense_Mutation p.S572F 0.06 deleterious(0) probably_damaging(0.959) TCGA-IQ-A61L-01 2 100176836 100176836 G T AFF3 Missense_Mutation p.A1086D 0.22 deleterious(0) benign(0.253) TCGA-IQ-A61L-01 2 202549820 202549820 T C MPP4 Missense_Mutation p.R181G 0.62 deleterious(0) probably_damaging(1) TCGA-IQ-A61L-01 2 220111842 220111842 C T STK16 Missense_Mutation p.T105M 0.51 deleterious(0) probably_damaging(0.996) TCGA-IQ-A61L-01 2 72360180 72360180 C T CYP26B1 Missense_Mutation p.R373H 0.17 deleterious(0) probably_damaging(0.998) TCGA-IQ-A61L-01 2 74399773 74399773 G C MOB1A Missense_Mutation p.L41V 0.12 deleterious(0.02) possibly_damaging(0.536) TCGA-IQ-A61L-01 3 113099872 113099872 G A WDR52 Silent p.G642G 0.18 TCGA-IQ-A61L-01 3 122060400 122060409 CTGACGGGCT - CSTA Frame_Shift_Del p.L95Ffs*22 0.27 TCGA-IQ-A61L-01 3 128986828 128986828 C T COPG1 Silent p.Y531Y 0.44 TCGA-IQ-A61L-01 3 156272920 156272920 C G SSR3 5'UTR 0.20 TCGA-IQ-A61L-01 3 159976304 159976304 G A IFT80 3'UTR 0.04 TCGA-IQ-A61L-01 3 183963099 183963099 G A ALG3 Silent p.V164V 0.10 TCGA-IQ-A61L-01 3 197598208 197598209 - G LRCH3 Frame_Shift_Ins p.L670Vfs*8 0.31 TCGA-IQ-A61L-01 3 27759290 27759290 G A EOMES Intron 0.41 TCGA-IQ-A61L-01 3 52841918 52841918 C T ITIH3 Missense_Mutation p.T806M 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-IQ-A61L-01 4 123140583 123140583 C A KIAA1109 Missense_Mutation p.S779Y 0.24 possibly_damaging(0.794) TCGA-IQ-A61L-01 4 153896526 153896526 C G FHDC1 Missense_Mutation p.Q695E 0.15 tolerated(0.35) benign(0.008) TCGA-IQ-A61L-01 4 38775054 38775054 C G TLR10 Missense_Mutation p.E720Q 0.13 deleterious(0) benign(0.407) TCGA-IQ-A61L-01 4 40818228 40818228 G A APBB2 Nonsense_Mutation p.R721* 0.16 TCGA-IQ-A61L-01 4 70355182 70355182 G A UGT2B4 Missense_Mutation p.S326L 0.11 tolerated(0.07) probably_damaging(0.942) TCGA-IQ-A61L-01 4 79791963 79791963 G A BMP2K Missense_Mutation p.E420K 0.12 tolerated_low_confidence(0.08) benign(0.067) TCGA-IQ-A61L-01 5 112363035 112363035 C T MCC Silent p.E1008E 0.08 TCGA-IQ-A61L-01 5 112458428 112458428 G C MCC Missense_Mutation p.S327C 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-IQ-A61L-01 5 112458494 112458494 G A MCC Missense_Mutation p.S305L 0.13 deleterious(0.01) probably_damaging(0.974) TCGA-IQ-A61L-01 5 5457735 5457735 G A KIAA0947 Missense_Mutation p.E328K 0.17 tolerated(0.22) benign(0.033) TCGA-IQ-A61L-01 5 57755599 57755599 G A PLK2 Missense_Mutation p.S63L 0.11 tolerated(0.15) benign(0.008) TCGA-IQ-A61L-01 6 106969030 106969030 C T AIM1 Missense_Mutation p.S908L 0.18 deleterious(0.04) benign(0.439) TCGA-IQ-A61L-01 6 112463442 112463442 C G LAMA4 Missense_Mutation p.R849T 0.08 tolerated(0.09) benign(0.088) TCGA-IQ-A61L-01 6 117248535 117248535 G C RFX6 Missense_Mutation p.C744S 0.30 deleterious_low_confidence(0.03) benign(0.132) TCGA-IQ-A61L-01 6 17543104 17543104 G C CAP2 Missense_Mutation p.E347Q 0.15 tolerated(0.13) benign(0.103) TCGA-IQ-A61L-01 6 26225550 26225550 G C HIST1H3E Missense_Mutation p.Q56H 0.22 deleterious_low_confidence(0.01) benign(0.224) TCGA-IQ-A61L-01 6 26406190 26406190 G C BTN3A1 Missense_Mutation p.D47H 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-IQ-A61L-01 6 31600766 31600766 G C PRRC2A Missense_Mutation p.R1439P 0.17 unknown(0) TCGA-IQ-A61L-01 6 56481654 56481654 A G DST Intron 0.28 TCGA-IQ-A61L-01 6 70637859 70637859 C T COL19A1 Nonsense_Mutation p.R109* 0.23 TCGA-IQ-A61L-01 6 88315721 88315721 C T ORC3 Nonsense_Mutation p.Q137* 0.32 TCGA-IQ-A61L-01 6 88767395 88767395 C T SPACA1 Missense_Mutation p.R111W 0.31 deleterious(0) probably_damaging(1) TCGA-IQ-A61L-01 7 104753433 104753433 C T KMT2E Missense_Mutation p.H1744Y 0.15 deleterious_low_confidence(0) benign(0.152) TCGA-IQ-A61L-01 7 18669051 18669051 G A HDAC9 Missense_Mutation p.R248Q 0.32 deleterious(0) possibly_damaging(0.819) TCGA-IQ-A61L-01 7 2472414 2472414 C T CHST12 Missense_Mutation p.P47L 0.34 tolerated(0.25) benign(0.015) TCGA-IQ-A61L-01 7 77469529 77469529 C G PHTF2 5'UTR 0.07 TCGA-IQ-A61L-01 7 92731914 92731914 G A SAMD9 Missense_Mutation p.S1166F 0.17 deleterious(0) benign(0.368) TCGA-IQ-A61L-01 8 114389056 114389056 G A CSMD3 Intron 0.16 TCGA-IQ-A61L-01 8 141754816 141754816 C T PTK2 Silent p.L523L 0.07 TCGA-IQ-A61L-01 8 8233963 8233963 C T SGK223 Nonsense_Mutation p.W652* 0.26 TCGA-IQ-A61L-01 9 123538450 123538450 T A FBXW2 Missense_Mutation p.D247V 0.33 deleterious(0) probably_damaging(0.982) TCGA-IQ-A61L-01 9 126143700 126143700 C G DENND1A 3'UTR 0.14 TCGA-IQ-A61L-01 9 130698925 130698925 C T DPM2 Missense_Mutation p.D35N 0.33 deleterious(0.03) probably_damaging(1) TCGA-IQ-A61L-01 9 133748276 133748276 A G ABL1 Missense_Mutation p.I332V 0.23 deleterious(0) probably_damaging(0.981) TCGA-IQ-A61L-01 9 140352951 140352951 C T NSMF Missense_Mutation p.R41H 0.55 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-IQ-A61L-01 9 32543994 32543994 G A TOPORS Nonsense_Mutation p.R177* 0.11 TCGA-IQ-A61L-01 9 5022188 5022188 C G JAK2 Missense_Mutation p.I67M 0.18 deleterious(0) possibly_damaging(0.494) TCGA-IQ-A61L-01 X 101969906 101969906 A C GPRASP2 Silent p.R37R 0.13 TCGA-IQ-A61L-01 X 48792042 48792042 C T OTUD5 Silent p.E284E 0.31 TCGA-IQ-A61L-01 X 50350983 50350983 C A SHROOM4 Silent p.L1053L 0.35 TCGA-IQ-A61L-01 X 51150789 51150789 G A CXorf67 Silent p.A307A 0.45 TCGA-IQ-A61O-01 10 72285683 72285683 G A PALD1 5'UTR 0.20 TCGA-IQ-A61O-01 11 5529680 5529680 C T UBQLN3 Missense_Mutation p.S370N 0.16 tolerated(0.56) benign(0.01) TCGA-IQ-A61O-01 11 61106814 61106814 G A DAK Silent p.P131P 0.16 TCGA-IQ-A61O-01 11 64112385 64112385 C T CCDC88B Missense_Mutation p.A791V 0.07 tolerated(0.07) benign(0.219) TCGA-IQ-A61O-01 11 65088450 65088450 G A CDC42EP2 Silent p.S27S 0.27 TCGA-IQ-A61O-01 11 65793355 65793355 C T CATSPER1 Missense_Mutation p.V166M 0.33 tolerated(0.24) benign(0.003) TCGA-IQ-A61O-01 12 120615320 120615320 T C GCN1L1 Silent p.S256S 0.07 TCGA-IQ-A61O-01 12 129563220 129563220 C A TMEM132D Silent p.V658V 0.10 TCGA-IQ-A61O-01 12 130648600 130648600 C T FZD10 Silent p.V371V 0.09 TCGA-IQ-A61O-01 12 313743 313743 G A SLC6A12 Silent p.C112C 0.25 TCGA-IQ-A61O-01 12 49373479 49373479 C T WNT1 Silent p.H111H 0.30 TCGA-IQ-A61O-01 12 56078994 56078994 G A ITGA7 Nonsense_Mutation p.R1092* 0.17 TCGA-IQ-A61O-01 12 57963187 57963187 G A KIF5A Missense_Mutation p.R323Q 0.14 deleterious(0) probably_damaging(1) TCGA-IQ-A61O-01 14 24032660 24032660 C T AP1G2 Missense_Mutation p.G447R 0.24 deleterious(0.01) possibly_damaging(0.895) TCGA-IQ-A61O-01 14 60921858 60921858 C A C14orf39 Missense_Mutation p.R455I 0.16 tolerated(0.15) benign(0.006) TCGA-IQ-A61O-01 14 62229140 62229141 - GAGGCGTGCGGGCTTCGGAGGCGTGCGGGCTTCG SNAPC1 5'UTR 0.08 TCGA-IQ-A61O-01 15 84694059 84694059 G T ADAMTSL3 Silent p.T1509T 0.29 TCGA-IQ-A61O-01 16 46781938 46781938 G T MYLK3 Missense_Mutation p.D56E 0.15 deleterious(0) benign(0.124) TCGA-IQ-A61O-01 16 48149453 48149453 C T ABCC12 Missense_Mutation p.R621H 0.16 tolerated(0.16) benign(0.103) TCGA-IQ-A61O-01 16 5078047 5078047 C T NAGPA Missense_Mutation p.G354S 0.11 probably_damaging(0.991) TCGA-IQ-A61O-01 17 29508730 29508730 A G NF1 Silent p.A219A 0.20 TCGA-IQ-A61O-01 17 75212337 75212337 T C SEC14L1 Intron 0.38 TCGA-IQ-A61O-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.18 TCGA-IQ-A61O-01 19 10668562 10668562 C T KRI1 Missense_Mutation p.D463N 0.22 deleterious(0) probably_damaging(0.975) TCGA-IQ-A61O-01 19 11144112 11144112 C T SMARCA4 Silent p.A1231A 0.10 TCGA-IQ-A61O-01 19 14031616 14031616 G A CC2D1A Missense_Mutation p.A508T 0.13 deleterious(0) probably_damaging(0.978) TCGA-IQ-A61O-01 19 40384116 40384116 G A FCGBP Missense_Mutation p.P3165L 0.07 probably_damaging(0.913) TCGA-IQ-A61O-01 19 51274037 51274037 C A GPR32 Silent p.G60G 0.18 TCGA-IQ-A61O-01 19 58101385 58101385 G A ZIK1 Missense_Mutation p.G69D 0.19 deleterious(0.02) probably_damaging(0.914) TCGA-IQ-A61O-01 19 7685213 7685213 G A XAB2 Silent p.V738V 0.19 TCGA-IQ-A61O-01 1 156642568 156642568 C A NES Missense_Mutation p.S471I 0.08 deleterious(0.03) probably_damaging(0.914) TCGA-IQ-A61O-01 1 204948630 204948630 G A NFASC Missense_Mutation p.E707K 0.12 tolerated(0.2) possibly_damaging(0.867) TCGA-IQ-A61O-01 1 216243458 216243458 T G USH2A Missense_Mutation p.T2012P 0.25 benign(0.049) TCGA-IQ-A61O-01 20 7886869 7886869 C G HAO1 Missense_Mutation p.S218T 0.04 tolerated(0.53) benign(0.002) TCGA-IQ-A61O-01 21 11038739 11038739 G T BAGE2 RNA 0.06 TCGA-IQ-A61O-01 22 39477512 39477513 AA - APOBEC3G Frame_Shift_Del p.E170Afs*3 0.23 TCGA-IQ-A61O-01 2 167263066 167263066 C T SCN7A Missense_Mutation p.R1358H 0.31 deleterious(0.02) benign(0.212) TCGA-IQ-A61O-01 2 227924263 227924263 G A COL4A4 Silent p.P747P 0.30 TCGA-IQ-A61O-01 2 231162144 231162144 G T SP140 Silent p.L675L 0.37 TCGA-IQ-A61O-01 3 151535308 151535308 G A AADAC Missense_Mutation p.R98K 0.48 tolerated(0.32) benign(0.005) TCGA-IQ-A61O-01 3 31712449 31712449 C - OSBPL10 Frame_Shift_Del p.E585Rfs*40 0.10 TCGA-IQ-A61O-01 4 10027568 10027568 C T SLC2A9 5'Flank 0.06 TCGA-IQ-A61O-01 4 134073184 134073184 G A PCDH10 Missense_Mutation p.R630H 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-IQ-A61O-01 4 156698722 156698722 C A GUCY1B3 Missense_Mutation p.F75L 0.12 tolerated(0.09) benign(0.06) TCGA-IQ-A61O-01 4 62363009 62363009 G A LPHN3 5'UTR 0.09 TCGA-IQ-A61O-01 5 140723860 140723860 C T PCDHGA3 Missense_Mutation p.A87V 0.41 deleterious_low_confidence(0.02) benign(0.396) TCGA-IQ-A61O-01 5 167957190 167957190 G A FBLL1 Silent p.E227E 0.59 TCGA-IQ-A61O-01 5 172197266 172197266 G T DUSP1 Missense_Mutation p.S137R 0.09 tolerated(0.16) benign(0.027) TCGA-IQ-A61O-01 5 59943361 59943361 C T DEPDC1B Splice_Site p.X105_splice 0.21 TCGA-IQ-A61O-01 7 142919270 142919270 C T AC073342.1 Missense_Mutation p.D31N 0.14 benign(0) TCGA-IQ-A61O-01 8 86115438 86115438 T G E2F5 Missense_Mutation p.L152V 0.13 tolerated(0.79) benign(0.002) TCGA-IQ-A61O-01 8 96053846 96053846 G A NDUFAF6 Missense_Mutation p.D157N 0.12 deleterious(0.01) benign(0.322) TCGA-IQ-A61O-01 9 136671256 136671256 G A VAV2 Silent p.S261S 0.38 TCGA-IQ-A61O-01 X 34961676 34961676 G A FAM47B Missense_Mutation p.R243H 0.20 tolerated(0.21) benign(0.439) TCGA-IQ-A6SG-01 10 35456623 35456626 TAAG - CREM Intron 0.27 TCGA-IQ-A6SG-01 10 45473232 45473232 G A C10orf10 Nonsense_Mutation p.R83* 0.43 TCGA-IQ-A6SG-01 10 5042613 5042613 G A AKR1C2 Intron 0.24 TCGA-IQ-A6SG-01 10 74690334 74690334 G A OIT3 Missense_Mutation p.R469Q 0.22 tolerated(0.16) possibly_damaging(0.612) TCGA-IQ-A6SG-01 10 76602906 76602906 A G KAT6B Silent p.G97G 0.48 TCGA-IQ-A6SG-01 11 113670032 113670032 T C USP28 Missense_Mutation p.Y1055C 0.47 deleterious(0.02) probably_damaging(0.91) TCGA-IQ-A6SG-01 11 117060985 117060985 C T SIDT2 Missense_Mutation p.R533C 0.20 tolerated(0.06) probably_damaging(0.959) TCGA-IQ-A6SG-01 11 123886371 123886371 G T OR10G4 Silent p.L30L 0.27 TCGA-IQ-A6SG-01 11 123909619 123909619 C A OR10G7 Silent p.L30L 0.10 TCGA-IQ-A6SG-01 11 1263956 1263956 C A MUC5B Missense_Mutation p.T1949N 0.09 unknown(0) TCGA-IQ-A6SG-01 11 62287002 62287002 T C AHNAK Missense_Mutation p.I4963V 0.23 benign(0.013) TCGA-IQ-A6SG-01 11 64004683 64004683 G T VEGFB Silent p.V133V 0.22 TCGA-IQ-A6SG-01 11 75277940 75277940 C T SERPINH1 Silent p.D182D 0.46 TCGA-IQ-A6SG-01 11 7674313 7674313 C T PPFIBP2 Missense_Mutation p.S832L 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-IQ-A6SG-01 11 7982173 7982173 G A NLRP10 Missense_Mutation p.T329M 0.26 tolerated(0.31) benign(0.073) TCGA-IQ-A6SG-01 11 84028117 84028117 C A DLG2 Intron 0.40 TCGA-IQ-A6SG-01 11 93141395 93141395 A G CCDC67 Splice_Site p.X443_splice 0.35 TCGA-IQ-A6SG-01 11 95826425 95826425 A G MAML2 Missense_Mutation p.L257P 0.37 possibly_damaging(0.731) TCGA-IQ-A6SG-01 12 104131454 104131454 C T STAB2 Missense_Mutation p.R1865W 0.15 deleterious(0) probably_damaging(0.996) TCGA-IQ-A6SG-01 12 110600833 110600833 G T IFT81 Missense_Mutation p.R384L 0.35 tolerated(0.19) benign(0.169) TCGA-IQ-A6SG-01 12 122825429 122825429 C T CLIP1 Silent p.L774L 0.20 TCGA-IQ-A6SG-01 12 40651059 40651059 G A LRRK2 Missense_Mutation p.R433K 0.32 tolerated(0.1) probably_damaging(0.99) TCGA-IQ-A6SG-01 12 52979749 52979749 A G KRT72 3'UTR 0.34 TCGA-IQ-A6SG-01 12 96384170 96384170 C G HAL Splice_Site p.X285_splice 0.35 TCGA-IQ-A6SG-01 13 29608146 29608146 G A MTUS2 Missense_Mutation p.R787H 0.17 deleterious(0) probably_damaging(0.999) TCGA-IQ-A6SG-01 13 48951141 48951141 G T RB1 Nonsense_Mutation p.G435* 0.51 TCGA-IQ-A6SG-01 14 105407146 105407146 T C AHNAK2 Missense_Mutation p.E4881G 0.19 benign(0.041) TCGA-IQ-A6SG-01 14 105716856 105716856 C - BTBD6 Frame_Shift_Del p.L436Wfs*14 0.26 TCGA-IQ-A6SG-01 14 20502685 20502685 G A OR4K13 Missense_Mutation p.T78I 0.27 deleterious(0.01) possibly_damaging(0.844) TCGA-IQ-A6SG-01 14 50074659 50074659 G T LRR1 Missense_Mutation p.R275L 0.23 deleterious(0) possibly_damaging(0.644) TCGA-IQ-A6SG-01 14 58817876 58817876 A G ARID4A Missense_Mutation p.D497G 0.25 tolerated(0.09) benign(0.41) TCGA-IQ-A6SG-01 14 92922825 92922825 C T SLC24A4 Silent p.N376N 0.36 TCGA-IQ-A6SG-01 15 48634180 48634180 A G DUT Intron 0.31 TCGA-IQ-A6SG-01 15 65370387 65370387 C A KBTBD13 Missense_Mutation p.L412M 0.21 deleterious(0.05) benign(0.141) TCGA-IQ-A6SG-01 16 2834670 2834670 C T PRSS33 Nonsense_Mutation p.W273* 0.47 TCGA-IQ-A6SG-01 16 48210931 48210931 T A ABCC11 Missense_Mutation p.M1148L 0.74 deleterious(0.02) benign(0.109) TCGA-IQ-A6SG-01 16 68710361 68710361 C T CDH3 Silent p.G78G 0.19 TCGA-IQ-A6SG-01 17 51901844 51901844 G C KIF2B Missense_Mutation p.A484P 0.42 deleterious(0) probably_damaging(1) TCGA-IQ-A6SG-01 17 56281637 56281637 C A EPX Missense_Mutation p.S667R 0.13 tolerated(1) benign(0.001) TCGA-IQ-A6SG-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.43 deleterious(0) probably_damaging(0.997) TCGA-IQ-A6SG-01 17 79652675 79652675 G A HGS Silent p.E26E 0.33 TCGA-IQ-A6SG-01 19 22575382 22575382 A G ZNF98 Missense_Mutation p.Y219H 0.26 deleterious(0) probably_damaging(0.913) TCGA-IQ-A6SG-01 19 42223994 42223994 G T CEACAM5 Missense_Mutation p.R546S 0.20 deleterious(0.02) probably_damaging(1) TCGA-IQ-A6SG-01 19 42223995 42223995 C T CEACAM5 Silent p.L547L 0.20 TCGA-IQ-A6SG-01 19 45515405 45515405 G A RELB Silent p.P125P 0.21 TCGA-IQ-A6SG-01 19 4818393 4818393 C A TICAM1 5'UTR 0.27 TCGA-IQ-A6SG-01 19 51219708 51219708 T C SHANK1 Missense_Mutation p.T95A 0.12 benign(0.097) TCGA-IQ-A6SG-01 1 100353650 100353650 A G AGL Missense_Mutation p.Y933C 0.30 deleterious(0) probably_damaging(0.999) TCGA-IQ-A6SG-01 1 110716721 110716721 G A SLC6A17 Missense_Mutation p.V191M 0.27 tolerated(0.11) possibly_damaging(0.694) TCGA-IQ-A6SG-01 1 111726975 111726975 A C CEPT1 3'UTR 0.12 TCGA-IQ-A6SG-01 1 112031544 112031544 C A ADORA3 Missense_Mutation p.W187L 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IQ-A6SG-01 1 120491110 120491110 G A NOTCH2 Silent p.G893G 0.33 TCGA-IQ-A6SG-01 1 12422808 12422808 A G VPS13D Missense_Mutation p.I3392V 0.15 benign(0.025) TCGA-IQ-A6SG-01 1 151090449 151090449 A T GABPB2 Missense_Mutation p.E355V 0.20 deleterious(0.04) benign(0.018) TCGA-IQ-A6SG-01 1 156675333 156675333 C T CRABP2 5'UTR 0.48 TCGA-IQ-A6SG-01 1 157105334 157105334 C T ETV3 Silent p.E71E 0.23 TCGA-IQ-A6SG-01 1 162335326 162335326 G A RP11-565P22.6 Missense_Mutation p.E44K 0.40 deleterious(0) probably_damaging(0.98) TCGA-IQ-A6SG-01 1 176525772 176525772 G A PAPPA2 Missense_Mutation p.S105N 0.12 tolerated_low_confidence(0.09) benign(0.001) TCGA-IQ-A6SG-01 1 176525773 176525773 C T PAPPA2 Silent p.S105S 0.12 TCGA-IQ-A6SG-01 1 196762779 196762779 T C CFHR3 3'UTR 0.36 TCGA-IQ-A6SG-01 1 197094227 197094227 T C ASPM Missense_Mutation p.I1011V 0.26 tolerated(0.14) benign(0.05) TCGA-IQ-A6SG-01 1 21205835 21205836 AT - EIF4G3 Frame_Shift_Del p.M818Vfs*17 0.19 TCGA-IQ-A6SG-01 1 227174271 227174271 G A ADCK3 Missense_Mutation p.V593I 0.27 tolerated(0.29) benign(0.005) TCGA-IQ-A6SG-01 1 228509168 228509168 G A OBSCN Missense_Mutation p.A5833T 0.42 probably_damaging(0.999) TCGA-IQ-A6SG-01 1 228558449 228558449 C T OBSCN Missense_Mutation p.R7703C 0.10 probably_damaging(0.995) TCGA-IQ-A6SG-01 1 235505557 235505557 G A GGPS1 Missense_Mutation p.G125R 0.28 deleterious(0) probably_damaging(0.999) TCGA-IQ-A6SG-01 1 247027358 247027358 C T AHCTF1 Silent p.Q1145Q 0.18 TCGA-IQ-A6SG-01 1 89630514 89630514 G C GBP7 Missense_Mutation p.S73C 0.15 deleterious(0) probably_damaging(0.989) TCGA-IQ-A6SG-01 20 10018979 10018979 C T ANKEF1 Silent p.N10N 0.08 TCGA-IQ-A6SG-01 20 3575126 3575126 C A ATRN Missense_Mutation p.P1108Q 0.09 tolerated(0.16) benign(0.365) TCGA-IQ-A6SG-01 20 36361471 36361471 T - CTNNBL1 Splice_Site p.X73_splice 0.32 TCGA-IQ-A6SG-01 20 62737418 62737418 C T NPBWR2 Missense_Mutation p.R256Q 0.24 tolerated(0.07) benign(0.029) TCGA-IQ-A6SG-01 21 36259423 36259423 T C RUNX1 Intron 0.16 TCGA-IQ-A6SG-01 22 32007791 32007791 C A SFI1 Missense_Mutation p.L819I 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-IQ-A6SG-01 2 175673737 175673737 T G CHN1 Missense_Mutation p.Y333S 0.11 deleterious(0) probably_damaging(1) TCGA-IQ-A6SG-01 2 179604205 179604205 A G TTN Silent p.T4585T 0.11 TCGA-IQ-A6SG-01 2 183817518 183817518 C T NCKAP1 Intron 0.38 TCGA-IQ-A6SG-01 2 190530956 190530956 A G ASNSD1 Missense_Mutation p.N33S 0.49 tolerated(0.17) benign(0.009) TCGA-IQ-A6SG-01 2 201305466 201305466 C A SPATS2L Silent p.S249S 0.41 TCGA-IQ-A6SG-01 2 28002301 28002301 G T MRPL33 Silent p.V50V 0.09 TCGA-IQ-A6SG-01 2 32460556 32460556 A G NLRC4 Missense_Mutation p.L899P 0.68 deleterious(0) possibly_damaging(0.813) TCGA-IQ-A6SG-01 2 73830430 73830430 C T ALMS1 Missense_Mutation p.R4120W 0.19 possibly_damaging(0.548) TCGA-IQ-A6SG-01 2 97875549 97875549 G A ANKRD36 Missense_Mutation p.E1103K 0.08 tolerated_low_confidence(0.81) benign(0) TCGA-IQ-A6SG-01 3 50339652 50339652 T C HYAL1 Missense_Mutation p.I246V 0.47 deleterious(0.02) possibly_damaging(0.458) TCGA-IQ-A6SG-01 4 126371057 126371057 C A FAT4 Silent p.S2962S 0.12 TCGA-IQ-A6SG-01 4 163032430 163032430 C T FSTL5 Missense_Mutation p.R40Q 0.24 tolerated_low_confidence(0.24) probably_damaging(0.945) TCGA-IQ-A6SG-01 4 41750617 41750617 A C PHOX2B Missense_Mutation p.M4R 0.30 deleterious(0) possibly_damaging(0.769) TCGA-IQ-A6SG-01 4 71024190 71024190 C A C4orf40 Nonsense_Mutation p.S74* 0.16 TCGA-IQ-A6SG-01 5 101834536 101834536 C T SLCO6A1 Missense_Mutation p.V5I 0.39 tolerated_low_confidence(0.17) possibly_damaging(0.796) TCGA-IQ-A6SG-01 5 134364505 134364505 C T PITX1 Silent p.P303P 0.28 TCGA-IQ-A6SG-01 5 176812989 176812989 C T SLC34A1 Silent p.V37V 0.13 TCGA-IQ-A6SG-01 5 180277793 180277793 G A ZFP62 Silent p.F234F 0.14 TCGA-IQ-A6SG-01 5 26881432 26881432 C G CDH9 Missense_Mutation p.S728T 0.35 tolerated(0.95) benign(0.001) TCGA-IQ-A6SG-01 5 41052690 41052690 C T MROH2B Splice_Site p.X370_splice 0.38 TCGA-IQ-A6SG-01 6 117677962 117677962 C A ROS1 Missense_Mutation p.R1324M 0.27 deleterious(0.02) possibly_damaging(0.56) TCGA-IQ-A6SG-01 6 11779102 11779102 C T ADTRP 5'Flank 0.50 TCGA-IQ-A6SG-01 6 132198300 132198300 C T ENPP1 Missense_Mutation p.S631L 0.18 tolerated(0.28) benign(0.004) TCGA-IQ-A6SG-01 6 22569762 22569762 G A HDGFL1 5'Flank 0.25 TCGA-IQ-A6SG-01 6 24467490 24467490 G C GPLD1 Silent p.V186V 0.25 TCGA-IQ-A6SG-01 6 28499613 28499613 C A GPX5 Silent p.P100P 0.25 TCGA-IQ-A6SG-01 6 28499654 28499654 A C GPX5 Missense_Mutation p.E114A 0.13 deleterious(0) probably_damaging(0.994) TCGA-IQ-A6SG-01 6 348269 348269 C A DUSP22 Missense_Mutation p.H144N 0.11 tolerated(0.49) benign(0) TCGA-IQ-A6SG-01 6 37342436 37342436 A G RNF8 Missense_Mutation p.D360G 0.33 tolerated(0.35) benign(0.345) TCGA-IQ-A6SG-01 6 43023876 43023876 C T MRPL2 Missense_Mutation p.E155K 0.11 deleterious(0.03) possibly_damaging(0.779) TCGA-IQ-A6SG-01 6 43039083 43039083 C - KLC4 Frame_Shift_Del p.H428Mfs*25 0.16 TCGA-IQ-A6SG-01 6 70386387 70386387 C A LMBRD1 Missense_Mutation p.W488C 0.37 deleterious(0) probably_damaging(0.94) TCGA-IQ-A6SG-01 7 107669625 107669625 T C LAMB4 Missense_Mutation p.K1670R 0.14 tolerated(0.2) benign(0.02) TCGA-IQ-A6SG-01 7 135418804 135418804 G C FAM180A Missense_Mutation p.I147M 0.20 tolerated(0.4) possibly_damaging(0.672) TCGA-IQ-A6SG-01 7 142836630 142836630 C G PIP Silent p.A112A 0.12 TCGA-IQ-A6SG-01 7 150066792 150066792 A T REPIN1 5'UTR 0.43 TCGA-IQ-A6SG-01 7 37890314 37890314 G T NME8 Missense_Mutation p.D59Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-IQ-A6SG-01 7 38288928 38288928 C T TRGC2 Missense_Mutation p.D83N 0.40 tolerated(0.16) benign(0.016) TCGA-IQ-A6SG-01 7 64167752 64167752 A T ZNF107 Missense_Mutation p.K357I 0.35 deleterious(0) probably_damaging(0.995) TCGA-IQ-A6SG-01 8 101178178 101178179 - A SPAG1 Frame_Shift_Ins p.I95Nfs*2 0.12 TCGA-IQ-A6SG-01 8 110478858 110478858 A G PKHD1L1 Missense_Mutation p.H2822R 0.23 tolerated(0.1) benign(0.004) TCGA-IQ-A6SG-01 8 3063085 3063085 G T CSMD1 Missense_Mutation p.P1642H 0.33 probably_damaging(1) TCGA-IQ-A6SG-01 8 37978466 37978466 G T ASH2L Missense_Mutation p.A322S 0.31 tolerated(0.41) benign(0.018) TCGA-IQ-A6SG-01 8 67062073 67062073 T C TRIM55 Missense_Mutation p.I266T 0.16 deleterious(0.02) probably_damaging(0.968) TCGA-IQ-A6SG-01 X 101095547 101095547 C T NXF5 Missense_Mutation p.G208R 0.08 deleterious(0.05) benign(0.281) TCGA-IQ-A6SG-01 X 107449790 107449790 T A COL4A6 Silent p.G190G 0.17 TCGA-IQ-A6SG-01 X 12735636 12735636 G T FRMPD4 Silent p.R897R 0.23 TCGA-IQ-A6SG-01 X 151303172 151303172 C A MAGEA10 Missense_Mutation p.R307S 0.14 tolerated(1) benign(0.002) TCGA-IQ-A6SG-01 X 153130126 153130126 G T L1CAM Missense_Mutation p.A1027E 0.19 tolerated(0.12) benign(0.22) TCGA-IQ-A6SG-01 X 35989810 35989810 C T CXorf22 Missense_Mutation p.A693V 0.13 tolerated(0.28) benign(0.009) TCGA-IQ-A6SG-01 X 44703764 44703764 T C DUSP21 Missense_Mutation p.L129P 0.15 deleterious(0) probably_damaging(0.999) TCGA-IQ-A6SG-01 X 70607209 70607209 G A TAF1 Silent p.R795R 0.13 TCGA-IQ-A6SG-01 X 78616623 78616623 T G ITM2A Missense_Mutation p.N252T 0.08 deleterious(0) possibly_damaging(0.792) TCGA-IQ-A6SG-01 X 91133749 91133749 G A PCDH11X Missense_Mutation p.R837H 0.13 tolerated(0.08) benign(0.022) TCGA-IQ-A6SG-01 X 91873878 91873878 C T PCDH11X Missense_Mutation p.P1328L 0.48 tolerated_low_confidence(0.22) possibly_damaging(0.632) TCGA-IQ-A6SH-01 10 102586776 102586776 C T PAX2 Silent p.F367F 0.28 TCGA-IQ-A6SH-01 10 37418911 37418911 C T ANKRD30A Silent p.G48G 0.19 TCGA-IQ-A6SH-01 10 64960317 64960317 C T JMJD1C Missense_Mutation p.R1732Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-IQ-A6SH-01 10 70706502 70706502 G T DDX50 3'UTR 0.38 TCGA-IQ-A6SH-01 10 74127891 74127891 G A MICU1 3'UTR 0.16 TCGA-IQ-A6SH-01 10 87373264 87373265 - T GRID1 Frame_Shift_Ins p.V834Dfs*53 0.15 TCGA-IQ-A6SH-01 11 130275912 130275912 C T ADAMTS8 Silent p.T737T 0.20 TCGA-IQ-A6SH-01 11 16816136 16816136 A T PLEKHA7 Missense_Mutation p.F882I 0.07 tolerated(0.34) benign(0.354) TCGA-IQ-A6SH-01 11 55595554 55595554 C T OR5L2 Missense_Mutation p.P287L 0.15 deleterious(0) possibly_damaging(0.594) TCGA-IQ-A6SH-01 11 6913228 6913228 G A OR2D2 Silent p.Y168Y 0.64 TCGA-IQ-A6SH-01 11 89431782 89431782 G A FOLH1B RNA 0.25 TCGA-IQ-A6SH-01 12 102117511 102117511 G T CHPT1 Missense_Mutation p.M317I 0.10 deleterious(0.02) benign(0.188) TCGA-IQ-A6SH-01 12 130649199 130649199 A G FZD10 Missense_Mutation p.Y571C 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.671) TCGA-IQ-A6SH-01 12 18699269 18699269 G - PIK3C2G Frame_Shift_Del p.G1124Dfs*5 0.69 TCGA-IQ-A6SH-01 12 26784902 26784902 G A ITPR2 Missense_Mutation p.P944L 0.09 tolerated(0.18) benign(0.217) TCGA-IQ-A6SH-01 12 52567511 52567511 G A KRT80 Missense_Mutation p.S235L 0.22 deleterious(0) benign(0.099) TCGA-IQ-A6SH-01 12 88447445 88447445 A G CEP290 Silent p.A2371A 0.29 TCGA-IQ-A6SH-01 13 23905610 23905610 T A SACS Missense_Mutation p.K4135N 0.09 probably_damaging(0.991) TCGA-IQ-A6SH-01 13 41704634 41704636 CTA - KBTBD6 In_Frame_Del p.V671del 0.29 TCGA-IQ-A6SH-01 13 52515327 52515327 C A ATP7B Missense_Mutation p.G1149V 0.28 deleterious(0) probably_damaging(1) TCGA-IQ-A6SH-01 14 105609257 105609257 C T JAG2 Silent p.A1164A 0.20 TCGA-IQ-A6SH-01 14 107078787 107078787 G T IGHV1-58 Missense_Mutation p.L8I 0.15 benign(0.227) TCGA-IQ-A6SH-01 14 107113751 107113751 T C IGHV3-64 Missense_Mutation p.Y115C 0.13 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-IQ-A6SH-01 14 70713760 70713760 A C ADAM21P1 RNA 0.14 TCGA-IQ-A6SH-01 14 70714163 70714163 T G ADAM21P1 RNA 0.04 TCGA-IQ-A6SH-01 15 102300649 102300649 A C DNM1P47 RNA 0.12 TCGA-IQ-A6SH-01 15 23316091 23316091 G A HERC2P2 RNA 0.14 TCGA-IQ-A6SH-01 15 25417689 25417689 C G SNORD115-3 5'Flank 0.06 TCGA-IQ-A6SH-01 15 91456856 91456856 C T MAN2A2 Missense_Mutation p.R911W 0.32 deleterious(0.01) probably_damaging(0.913) TCGA-IQ-A6SH-01 16 20370764 20370764 G A PDILT Silent p.Y544Y 0.35 TCGA-IQ-A6SH-01 16 2237366 2237366 C T CASKIN1 Silent p.R238R 0.35 TCGA-IQ-A6SH-01 16 28848065 28848065 C T ATXN2L 3'UTR 0.18 TCGA-IQ-A6SH-01 16 4954018 4954019 - C PPL Frame_Shift_Ins p.R63Sfs*4 0.27 TCGA-IQ-A6SH-01 16 51175091 51175091 C T SALL1 Missense_Mutation p.V348I 0.18 tolerated(0.56) benign(0.002) TCGA-IQ-A6SH-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.54 TCGA-IQ-A6SH-01 17 79479040 79479040 C T ACTG1 Silent p.K84K 0.57 TCGA-IQ-A6SH-01 17 79973059 79973059 G A ASPSCR1 Missense_Mutation p.V488M 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.659) TCGA-IQ-A6SH-01 18 19153390 19153390 A T ESCO1 Missense_Mutation p.I472N 0.33 deleterious(0.04) benign(0.149) TCGA-IQ-A6SH-01 19 12060899 12060899 C T ZNF700 Missense_Mutation p.S687F 0.21 tolerated(0.7) possibly_damaging(0.73) TCGA-IQ-A6SH-01 19 19625862 19625862 G A TSSK6 Silent p.Y125Y 0.23 TCGA-IQ-A6SH-01 19 48643366 48643366 G A LIG1 Missense_Mutation p.R317C 0.50 deleterious(0.04) possibly_damaging(0.839) TCGA-IQ-A6SH-01 19 55748070 55748070 G A PPP6R1 Silent p.G643G 0.09 TCGA-IQ-A6SH-01 19 57922680 57922680 C T ZNF17 5'UTR 0.29 TCGA-IQ-A6SH-01 1 100316543 100316543 C T AGL 5'UTR 0.20 TCGA-IQ-A6SH-01 1 103471441 103471441 G C COL11A1 Missense_Mutation p.R600G 0.22 unknown(0) TCGA-IQ-A6SH-01 1 115398159 115398159 C T SYCP1 Missense_Mutation p.P25L 0.35 deleterious(0) probably_damaging(0.999) TCGA-IQ-A6SH-01 1 150192918 150192918 C A ANP32E 3'UTR 0.34 TCGA-IQ-A6SH-01 1 151146953 151146953 C A TMOD4 Missense_Mutation p.R65L 0.21 deleterious(0) probably_damaging(1) TCGA-IQ-A6SH-01 1 155989934 155989934 A G SSR2 Silent p.L9L 0.38 TCGA-IQ-A6SH-01 1 1572077 1572077 C A CDK11B Missense_Mutation p.K631N 0.26 unknown(0) TCGA-IQ-A6SH-01 1 167385075 167385075 C G POU2F1 3'UTR 0.12 TCGA-IQ-A6SH-01 1 202977833 202977833 G A TMEM183A Missense_Mutation p.G88S 0.09 tolerated(0.15) benign(0.068) TCGA-IQ-A6SH-01 1 206646649 206646649 C T IKBKE Missense_Mutation p.R27C 0.25 deleterious(0) probably_damaging(1) TCGA-IQ-A6SH-01 1 237865278 237865278 T C RYR2 Missense_Mutation p.L3123S 0.19 benign(0.418) TCGA-IQ-A6SH-01 1 248525491 248525491 C T OR2T4 Silent p.S203S 0.31 TCGA-IQ-A6SH-01 1 39797211 39797211 A G MACF1 Intron 0.21 TCGA-IQ-A6SH-01 20 31607497 31607497 G A BPIFB2 Missense_Mutation p.V341M 0.17 deleterious(0) probably_damaging(0.953) TCGA-IQ-A6SH-01 20 3765252 3765252 C A CENPB 3'UTR 0.06 TCGA-IQ-A6SH-01 20 61981080 61981080 C T CHRNA4 Silent p.S561S 0.10 TCGA-IQ-A6SH-01 21 47776888 47776888 G C PCNT Splice_Site p.X646_splice 0.10 TCGA-IQ-A6SH-01 22 36587488 36587488 A G APOL4 Missense_Mutation p.S230P 0.23 deleterious(0) probably_damaging(0.994) TCGA-IQ-A6SH-01 2 128409331 128409331 C T GPR17 3'UTR 0.22 TCGA-IQ-A6SH-01 2 135095943 135095943 C G MGAT5 Missense_Mutation p.I253M 0.22 deleterious(0.02) possibly_damaging(0.672) TCGA-IQ-A6SH-01 2 169801270 169801270 C T ABCB11 Missense_Mutation p.A819T 0.06 tolerated(1) benign(0.012) TCGA-IQ-A6SH-01 2 179542480 179542480 C T TTN Missense_Mutation p.E11387K 0.12 TCGA-IQ-A6SH-01 2 185802016 185802016 G A ZNF804A Silent p.G631G 0.38 TCGA-IQ-A6SH-01 2 200137015 200137015 G A SATB2 Silent p.S707S 0.36 TCGA-IQ-A6SH-01 2 33810288 33810288 C A FAM98A Missense_Mutation p.R371L 0.29 tolerated(0.16) unknown(0) TCGA-IQ-A6SH-01 2 40656194 40656194 G T SLC8A1 Silent p.I409I 0.11 TCGA-IQ-A6SH-01 2 80085145 80085145 C T CTNNA2 Missense_Mutation p.T102M 0.34 tolerated(0.08) benign(0.379) TCGA-IQ-A6SH-01 2 86756512 86756512 T C RNF103-CHMP3 Missense_Mutation p.R68G 0.31 deleterious(0.01) benign(0.082) TCGA-IQ-A6SH-01 3 101395454 101395454 C T ZBTB11 Nonsense_Mutation p.W102* 0.41 TCGA-IQ-A6SH-01 3 102183053 102183053 C T ZPLD1 Missense_Mutation p.S256L 0.28 deleterious(0) probably_damaging(0.994) TCGA-IQ-A6SH-01 3 111988789 111988789 G A SLC9C1 Missense_Mutation p.S250L 0.26 deleterious(0.01) benign(0.286) TCGA-IQ-A6SH-01 3 157289047 157289047 C T C3orf55 Silent p.D55D 0.19 TCGA-IQ-A6SH-01 3 167422683 167422683 G C PDCD10 Missense_Mutation p.L33V 0.17 deleterious(0.04) benign(0.007) TCGA-IQ-A6SH-01 3 183888591 183888591 C T DVL3 3'UTR 0.23 TCGA-IQ-A6SH-01 4 140454503 140454503 T C SETD7 Missense_Mutation p.Y63C 0.59 deleterious(0) probably_damaging(0.937) TCGA-IQ-A6SH-01 4 146058521 146058521 T A OTUD4 3'UTR 0.55 TCGA-IQ-A6SH-01 4 42580325 42580325 C T ATP8A1 Silent p.L360L 0.18 TCGA-IQ-A6SH-01 4 47853937 47853937 C T NFXL1 Missense_Mutation p.R815H 0.08 tolerated(0.09) possibly_damaging(0.629) TCGA-IQ-A6SH-01 4 90168949 90168949 C A GPRIN3 Silent p.P771P 0.05 TCGA-IQ-A6SH-01 5 140216232 140216232 G A PCDHA7 Missense_Mutation p.R755Q 0.31 tolerated_low_confidence(0.12) benign(0.01) TCGA-IQ-A6SH-01 5 2749007 2749018 TCCTCGTCGTCG - IRX2 In_Frame_Del p.D268_E271del 0.11 TCGA-IQ-A6SH-01 5 41009498 41009498 T C MROH2B Missense_Mutation p.T1102A 0.10 tolerated(0.23) benign(0.002) TCGA-IQ-A6SH-01 5 68665385 68665385 G A TAF9 Intron 0.20 TCGA-IQ-A6SH-01 5 68665386 68665386 G A TAF9 Intron 0.18 TCGA-IQ-A6SH-01 6 133769265 133769265 T C EYA4 Silent p.V75V 0.22 TCGA-IQ-A6SH-01 6 27369064 27369064 C T ZNF391 Silent p.H305H 0.26 TCGA-IQ-A6SH-01 6 31919927 31919927 A C NELFE 3'UTR 0.44 TCGA-IQ-A6SH-01 6 39859410 39859410 G A DAAM2 Silent p.R751R 0.24 TCGA-IQ-A6SH-01 6 57512616 57512616 G A PRIM2 3'UTR 0.06 TCGA-IQ-A6SH-01 6 97621033 97621033 G A MMS22L Silent p.S915S 0.18 TCGA-IQ-A6SH-01 7 100211107 100211107 C T MOSPD3 Missense_Mutation p.R97C 0.15 deleterious(0) probably_damaging(0.999) TCGA-IQ-A6SH-01 7 31918738 31918738 G A PDE1C Missense_Mutation p.P159L 0.16 deleterious(0) probably_damaging(0.983) TCGA-IQ-A6SH-01 7 48391978 48391978 C T ABCA13 Nonsense_Mutation p.Q3528* 0.19 TCGA-IQ-A6SH-01 7 53103481 53103481 G A POM121L12 Silent p.T39T 0.21 TCGA-IQ-A6SH-01 7 53104173 53104173 C T POM121L12 Missense_Mutation p.A270V 0.26 tolerated_low_confidence(0.07) possibly_damaging(0.873) TCGA-IQ-A6SH-01 7 82581207 82581207 G A PCLO Missense_Mutation p.T3021I 0.28 unknown(0) TCGA-IQ-A6SH-01 7 95221315 95221315 G A PDK4 Missense_Mutation p.L227F 0.05 tolerated(0.17) probably_damaging(0.984) TCGA-IQ-A6SH-01 8 11421436 11421445 GCAACCTGGA - BLK Frame_Shift_Del p.N447Afs*134 0.28 TCGA-IQ-A6SH-01 8 41791962 41791962 T C KAT6A Missense_Mutation p.N1259S 0.17 unknown(0) TCGA-IQ-A6SH-01 8 91094274 91094274 C A CALB1 Missense_Mutation p.A46S 0.03 tolerated(0.49) possibly_damaging(0.663) TCGA-IQ-A6SH-01 9 21141434 21141434 T A IFNW1 Nonsense_Mutation p.R46* 0.48 TCGA-IQ-A6SH-01 9 21971088 21971088 G T CDKN2A Missense_Mutation p.F90L 0.47 deleterious(0) probably_damaging(0.999) TCGA-IQ-A6SH-01 X 111914239 111914239 C T LHFPL1 Missense_Mutation p.G127E 0.12 deleterious(0) probably_damaging(0.988) TCGA-IQ-A6SH-01 X 135431039 135431039 C T GPR112 Missense_Mutation p.S1725F 0.31 tolerated(0.09) benign(0.016) TCGA-IQ-A6SH-01 X 26157128 26157128 T C MAGEB18 Missense_Mutation p.L9P 0.10 deleterious(0.02) possibly_damaging(0.748) TCGA-IQ-A6SH-01 X 37965888 37965888 G C SYTL5 Missense_Mutation p.D422H 0.52 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 10 105154068 105154068 G C USMG5 5'UTR 0.05 TCGA-KU-A66S-01 10 114200423 114200423 C G ZDHHC6 Missense_Mutation p.D184H 0.19 tolerated(0.06) probably_damaging(0.965) TCGA-KU-A66S-01 10 121662422 121662422 C G SEC23IP Missense_Mutation p.Q270E 0.05 tolerated(0.1) benign(0.321) TCGA-KU-A66S-01 10 13320266 13320266 G A PHYH 3'UTR 0.33 TCGA-KU-A66S-01 10 18828755 18828755 G T CACNB2 3'UTR 0.19 TCGA-KU-A66S-01 10 20290916 20290916 G T PLXDC2 Splice_Site p.X108_splice 0.21 TCGA-KU-A66S-01 10 26505700 26505700 C G GAD2 5'UTR 0.11 TCGA-KU-A66S-01 10 27406523 27406523 C A YME1L1 Silent p.R624R 0.34 TCGA-KU-A66S-01 10 32197118 32197118 G C ARHGAP12 Missense_Mutation p.S222R 0.20 deleterious(0.02) probably_damaging(0.961) TCGA-KU-A66S-01 10 44052666 44052666 C TG ZNF239 Frame_Shift_Ins p.E288Qfs*5 0.23 TCGA-KU-A66S-01 10 46918325 46918325 A T RP11-38L15.8 5'Flank 0.29 TCGA-KU-A66S-01 10 52595854 52595854 G A A1CF Missense_Mutation p.A203V 0.40 deleterious(0) possibly_damaging(0.887) TCGA-KU-A66S-01 10 5791144 5791144 G C FAM208B Silent p.G1920G 0.14 TCGA-KU-A66S-01 10 68687741 68687741 A T LRRTM3 Missense_Mutation p.K356M 0.43 tolerated(0.23) possibly_damaging(0.593) TCGA-KU-A66S-01 10 72511362 72511362 G C ADAMTS14 Silent p.A855A 0.17 TCGA-KU-A66S-01 10 75289361 75289361 G C USP54 Intron 0.44 TCGA-KU-A66S-01 10 97975101 97975101 C T BLNK Missense_Mutation p.A218T 0.40 tolerated(0.27) benign(0.004) TCGA-KU-A66S-01 10 99661260 99661260 C T CRTAC1 Missense_Mutation p.R378H 0.23 deleterious(0) probably_damaging(0.935) TCGA-KU-A66S-01 11 114401276 114401276 C G NXPE1 Missense_Mutation p.A10P 0.23 deleterious(0) probably_damaging(0.995) TCGA-KU-A66S-01 11 118939912 118939912 G C VPS11 Missense_Mutation p.E65Q 0.08 tolerated(0.38) benign(0.023) TCGA-KU-A66S-01 11 121367578 121367578 G A SORL1 Nonsense_Mutation p.W253* 0.33 TCGA-KU-A66S-01 11 122848512 122848512 C G BSX Missense_Mutation p.E183Q 0.20 tolerated(0.07) benign(0.024) TCGA-KU-A66S-01 11 124189669 124189669 G T OR8D2 Missense_Mutation p.S142Y 0.40 tolerated(0.75) probably_damaging(0.999) TCGA-KU-A66S-01 11 126133681 126133681 C G SRPR 3'UTR 0.31 TCGA-KU-A66S-01 11 126314937 126314937 C A KIRREL3 Missense_Mutation p.V397L 0.49 deleterious(0.03) probably_damaging(0.987) TCGA-KU-A66S-01 11 1272374 1272374 C G MUC5B Missense_Mutation p.S4755C 0.23 unknown(0) TCGA-KU-A66S-01 11 132527066 132527066 C G OPCML Missense_Mutation p.D106H 0.25 deleterious(0) probably_damaging(0.995) TCGA-KU-A66S-01 11 14902204 14902204 C G CYP2R1 Missense_Mutation p.E160Q 0.14 deleterious(0.02) benign(0.312) TCGA-KU-A66S-01 11 17415891 17415891 G C ABCC8 Missense_Mutation p.F1489L 0.31 deleterious(0.01) benign(0.002) TCGA-KU-A66S-01 11 21592315 21592315 C T NELL1 Silent p.G662G 0.21 TCGA-KU-A66S-01 11 3023793 3023793 G C CARS Missense_Mutation p.A752G 0.05 deleterious(0.04) benign(0.005) TCGA-KU-A66S-01 11 33053026 33053026 A G DEPDC7 Silent p.T295T 0.41 TCGA-KU-A66S-01 11 33596355 33596355 G A KIAA1549L Silent p.L1149L 0.12 TCGA-KU-A66S-01 11 43469657 43469657 C G TTC17 Missense_Mutation p.S924C 0.13 deleterious(0.01) possibly_damaging(0.906) TCGA-KU-A66S-01 11 43905554 43905554 C A ALKBH3 Missense_Mutation p.P69T 0.06 tolerated(0.19) possibly_damaging(0.558) TCGA-KU-A66S-01 11 45832798 45832798 C G SLC35C1 Missense_Mutation p.A336G 0.09 tolerated(0.12) benign(0.03) TCGA-KU-A66S-01 11 4608714 4608714 C G OR52I2 Silent p.P224P 0.24 TCGA-KU-A66S-01 11 48166390 48166390 C G PTPRJ Silent p.T913T 0.21 TCGA-KU-A66S-01 11 4903237 4903237 C G OR51T1 Silent p.L63L 0.08 TCGA-KU-A66S-01 11 55322862 55322862 G C OR4C15 Silent p.V360V 0.07 TCGA-KU-A66S-01 11 55433331 55433331 G A OR4C6 Missense_Mutation p.G230E 0.46 deleterious_low_confidence(0.02) benign(0.211) TCGA-KU-A66S-01 11 55433332 55433332 G A OR4C6 Silent p.G230G 0.44 TCGA-KU-A66S-01 11 55541039 55541039 G - OR5D13 Frame_Shift_Del p.N44Tfs*4 0.26 TCGA-KU-A66S-01 11 58477257 58477257 C G GLYAT Missense_Mutation p.W291C 0.06 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 11 58979086 58979086 G A MPEG1 Missense_Mutation p.P418L 0.16 deleterious(0.02) benign(0.013) TCGA-KU-A66S-01 11 58979418 58979418 G C MPEG1 Silent p.G307G 0.16 TCGA-KU-A66S-01 11 59629092 59629092 C A TCN1 Missense_Mutation p.C155F 0.20 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 11 60637319 60637319 C G ZP1 Missense_Mutation p.Q210E 0.16 tolerated(0.24) benign(0.034) TCGA-KU-A66S-01 11 6129689 6129689 C G OR56B4 Missense_Mutation p.I227M 0.15 deleterious(0) probably_damaging(0.993) TCGA-KU-A66S-01 11 618910 618910 G C CDHR5 Missense_Mutation p.P550R 0.10 tolerated(0.08) probably_damaging(0.946) TCGA-KU-A66S-01 11 64525373 64525373 C G PYGM Missense_Mutation p.A180P 0.07 tolerated(1) probably_damaging(0.999) TCGA-KU-A66S-01 11 64622179 64622179 C G EHD1 Missense_Mutation p.G411R 0.04 deleterious(0.03) possibly_damaging(0.843) TCGA-KU-A66S-01 11 65628881 65628881 C T MUS81 Missense_Mutation p.A109V 0.29 tolerated(0.2) benign(0.11) TCGA-KU-A66S-01 11 6588637 6588637 C G DNHD1 Missense_Mutation p.S3966R 0.25 probably_damaging(0.988) TCGA-KU-A66S-01 11 6592025 6592025 C G DNHD1 Missense_Mutation p.S4428C 0.21 possibly_damaging(0.549) TCGA-KU-A66S-01 11 66108730 66108730 G C BRMS1 Missense_Mutation p.T102R 0.12 tolerated(0.17) benign(0.023) TCGA-KU-A66S-01 11 6653622 6653622 C G DCHS1 Missense_Mutation p.A1041P 0.06 tolerated(0.28) benign(0) TCGA-KU-A66S-01 11 67047151 67047151 G C ADRBK1 Missense_Mutation p.V141L 0.07 tolerated(0.22) benign(0.014) TCGA-KU-A66S-01 11 7111017 7111017 C A RBMXL2 Missense_Mutation p.S222R 0.27 tolerated(0.18) benign(0.001) TCGA-KU-A66S-01 11 71729335 71729335 C A NUMA1 Missense_Mutation p.R291L 0.31 probably_damaging(0.998) TCGA-KU-A66S-01 11 72069969 72069969 C T CLPB Missense_Mutation p.V274I 0.44 deleterious(0.04) possibly_damaging(0.524) TCGA-KU-A66S-01 11 76062271 76062271 C A PRKRIR Missense_Mutation p.E641D 0.36 deleterious(0.01) possibly_damaging(0.806) TCGA-KU-A66S-01 11 7663650 7663650 C G PPFIBP2 Missense_Mutation p.Q547E 0.17 tolerated(0.13) probably_damaging(0.974) TCGA-KU-A66S-01 11 85366750 85366750 C G TMEM126A Silent p.A131A 0.21 TCGA-KU-A66S-01 11 8933164 8933165 - C AKIP1 Frame_Shift_Ins p.H58Pfs*26 0.28 TCGA-KU-A66S-01 12 100617626 100617626 T C ACTR6 Missense_Mutation p.M375T 0.47 tolerated(0.52) benign(0.096) TCGA-KU-A66S-01 12 1023247 1023247 G C RAD52 Silent p.P336P 0.07 TCGA-KU-A66S-01 12 109018036 109018036 G C SELPLG Missense_Mutation p.N32K 0.27 deleterious(0.02) unknown(0) TCGA-KU-A66S-01 12 113533182 113533182 G A DTX1 Missense_Mutation p.R534H 0.39 deleterious(0) probably_damaging(0.998) TCGA-KU-A66S-01 12 118517331 118517331 C A VSIG10 Missense_Mutation p.G249W 0.37 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 12 118517333 118517333 T A VSIG10 Missense_Mutation p.D248V 0.39 tolerated(0.3) benign(0.405) TCGA-KU-A66S-01 12 123187747 123187747 C G HCAR2 Missense_Mutation p.K28N 0.18 tolerated(0.55) benign(0) TCGA-KU-A66S-01 12 125396269 125396269 C G UBC Silent p.G683G 0.37 TCGA-KU-A66S-01 12 129694095 129694095 C G TMEM132D Missense_Mutation p.E471D 0.09 tolerated(0.15) benign(0.152) TCGA-KU-A66S-01 12 28459739 28459739 A G CCDC91 Missense_Mutation p.K111R 0.34 tolerated(0.4) benign(0.124) TCGA-KU-A66S-01 12 28702084 28702084 C A CCDC91 Missense_Mutation p.T435K 0.33 tolerated(0.13) possibly_damaging(0.841) TCGA-KU-A66S-01 12 30884431 30884431 C G CAPRIN2 Missense_Mutation p.K302N 0.35 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 12 40618913 40618913 G T LRRK2 5'UTR 0.30 TCGA-KU-A66S-01 12 41967276 41967276 C G PDZRN4 Missense_Mutation p.R899G 0.13 deleterious(0) probably_damaging(0.998) TCGA-KU-A66S-01 12 46320063 46320063 C A SCAF11 Nonsense_Mutation p.G1141* 0.23 TCGA-KU-A66S-01 12 5020659 5020659 G C KCNA1 Missense_Mutation p.V39L 0.16 tolerated(0.21) probably_damaging(0.998) TCGA-KU-A66S-01 12 52967279 52967279 C T KRT74 Missense_Mutation p.G95S 0.37 tolerated(0.07) probably_damaging(0.991) TCGA-KU-A66S-01 12 53899503 53899503 C G TARBP2 Nonsense_Mutation p.S271* 0.04 TCGA-KU-A66S-01 12 56295745 56295745 C G WIBG Missense_Mutation p.V176L 0.03 tolerated(0.4) benign(0.01) TCGA-KU-A66S-01 12 57921681 57921681 C T MBD6 Nonsense_Mutation p.Q763* 0.42 TCGA-KU-A66S-01 12 8051232 8051232 C G NANOGP1 RNA 0.21 TCGA-KU-A66S-01 12 81239533 81239533 G T LIN7A Missense_Mutation p.D153E 0.26 deleterious(0.02) probably_damaging(0.918) TCGA-KU-A66S-01 12 81568586 81568586 C A ACSS3 Missense_Mutation p.P373Q 0.27 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 12 91558412 91558412 A G DCN Silent p.D98D 0.33 TCGA-KU-A66S-01 12 9847437 9847437 G C CLEC2D 3'UTR 0.17 TCGA-KU-A66S-01 12 98850228 98850228 C G SLC9A7P1 RNA 0.08 TCGA-KU-A66S-01 13 101910915 101910915 C A NALCN Missense_Mutation p.R382L 0.30 deleterious(0.03) benign(0.295) TCGA-KU-A66S-01 13 112722289 112722289 G T SOX1 Missense_Mutation p.R106L 0.16 deleterious(0) probably_damaging(0.973) TCGA-KU-A66S-01 13 114530081 114530081 G C GAS6 Missense_Mutation p.D455E 0.11 tolerated(0.35) possibly_damaging(0.83) TCGA-KU-A66S-01 13 32821508 32821508 C T FRY Missense_Mutation p.R2293W 0.46 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 13 32839624 32839625 - T FRY Frame_Shift_Ins p.E2607* 0.30 TCGA-KU-A66S-01 13 33591149 33591149 C G KL Missense_Mutation p.L191V 0.19 deleterious(0) probably_damaging(0.997) TCGA-KU-A66S-01 13 33591157 33591157 C G KL Missense_Mutation p.H193Q 0.17 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 13 33591184 33591184 C T KL Silent p.D202D 0.16 TCGA-KU-A66S-01 13 46287426 46287426 C A SPERT Missense_Mutation p.S89Y 0.41 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-KU-A66S-01 13 77581466 77581466 C G FBXL3 Silent p.G367G 0.05 TCGA-KU-A66S-01 13 88327882 88327882 G C SLITRK5 Missense_Mutation p.R80P 0.34 tolerated(0.18) benign(0.002) TCGA-KU-A66S-01 13 98829284 98829284 G T RNF113B Silent p.L69L 0.18 TCGA-KU-A66S-01 14 100847552 100847552 G C WDR25 Missense_Mutation p.Q97H 0.14 deleterious(0.02) possibly_damaging(0.717) TCGA-KU-A66S-01 14 101201288 101201288 C A DLK1 3'UTR 0.35 TCGA-KU-A66S-01 14 103410270 103410270 G C CDC42BPB Missense_Mutation p.R1456G 0.11 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 14 105416749 105416749 G C AHNAK2 Missense_Mutation p.S1680W 0.05 probably_damaging(0.978) TCGA-KU-A66S-01 14 106805441 106805441 C A IGHV4-31 Missense_Mutation p.C41F 0.09 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-KU-A66S-01 14 20586299 20586299 T C OR4K17 Missense_Mutation p.L245S 0.37 deleterious(0) probably_damaging(0.997) TCGA-KU-A66S-01 14 21360228 21360228 G C RNASE3 Missense_Mutation p.R128T 0.20 tolerated(1) benign(0.003) TCGA-KU-A66S-01 14 21896184 21896184 C G CHD8 Missense_Mutation p.R482P 0.07 deleterious(0) probably_damaging(0.989) TCGA-KU-A66S-01 14 22690118 22690118 C T TRAV35 Missense_Mutation p.P26L 0.30 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 14 23859506 23859506 C T MYH6 Silent p.E1164E 0.14 TCGA-KU-A66S-01 14 24040346 24040346 G A JPH4 Missense_Mutation p.L532F 0.42 tolerated(0.25) probably_damaging(0.979) TCGA-KU-A66S-01 14 24464335 24464335 G C DHRS4L2 Missense_Mutation p.W134S 0.08 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 14 30132910 30132910 G A PRKD1 Missense_Mutation p.L231F 0.19 tolerated(0.53) benign(0.223) TCGA-KU-A66S-01 14 55818712 55818712 C T FBXO34 Missense_Mutation p.A535V 0.38 tolerated(0.74) benign(0.018) TCGA-KU-A66S-01 14 64416650 64416650 C T SYNE2 Silent p.C172C 0.33 TCGA-KU-A66S-01 14 64518682 64518682 G A SYNE2 Missense_Mutation p.G2684E 0.37 benign(0.394) TCGA-KU-A66S-01 14 68029195 68029195 G C PLEKHH1 Missense_Mutation p.G283R 0.16 tolerated_low_confidence(0.06) benign(0.01) TCGA-KU-A66S-01 14 74454625 74454625 G T ENTPD5 Silent p.R61R 0.11 TCGA-KU-A66S-01 14 75142547 75142547 C T AREL1 Nonsense_Mutation p.W312* 0.35 TCGA-KU-A66S-01 14 89069315 89069315 C G ZC3H14 Nonsense_Mutation p.S553* 0.11 TCGA-KU-A66S-01 14 90651011 90651011 G C KCNK13 Silent p.G297G 0.17 TCGA-KU-A66S-01 14 93723574 93723574 G C BTBD7 Missense_Mutation p.I525M 0.22 deleterious(0.01) possibly_damaging(0.55) TCGA-KU-A66S-01 14 94756658 94756658 G C SERPINA10 Silent p.S91S 0.23 TCGA-KU-A66S-01 15 24921554 24921554 T A NPAP1 Silent p.L180L 0.35 TCGA-KU-A66S-01 15 33990092 33990092 G A RYR3 Missense_Mutation p.M2048I 0.44 possibly_damaging(0.449) TCGA-KU-A66S-01 15 38229119 38229119 C T TMCO5A Missense_Mutation p.T71M 0.39 tolerated(0.17) benign(0.008) TCGA-KU-A66S-01 15 41750044 41750044 G C RTF1 Missense_Mutation p.R211P 0.11 deleterious(0) possibly_damaging(0.864) TCGA-KU-A66S-01 15 45444587 45444587 C G DUOX1 Nonsense_Mutation p.Y1099* 0.21 TCGA-KU-A66S-01 15 48063436 48063436 C - SEMA6D Frame_Shift_Del p.A895Pfs*13 0.12 TCGA-KU-A66S-01 15 58004253 58004253 G T POLR2M Missense_Mutation p.R277L 0.38 deleterious(0) probably_damaging(0.935) TCGA-KU-A66S-01 15 59181678 59181678 C G SLTM Missense_Mutation p.E719Q 0.23 deleterious(0) unknown(0) TCGA-KU-A66S-01 15 65262485 65262485 C T SPG21 Missense_Mutation p.M176I 0.33 tolerated(0.19) benign(0) TCGA-KU-A66S-01 15 71341938 71341938 C G LRRC49 Missense_Mutation p.T688R 0.14 tolerated(0.13) benign(0.055) TCGA-KU-A66S-01 15 73029293 73029293 C G BBS4 Missense_Mutation p.T480R 0.09 tolerated_low_confidence(0.1) benign(0.001) TCGA-KU-A66S-01 15 75013017 75013029 CCAAAGATAATCA - CYP1A1 Frame_Shift_Del p.V447Afs*36 0.29 TCGA-KU-A66S-01 15 75979935 75979935 G C CSPG4 Missense_Mutation p.D1157E 0.04 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 15 83296034 83296034 G A CPEB1 Nonsense_Mutation p.R34* 0.48 TCGA-KU-A66S-01 15 83805432 83805432 A T TM6SF1 3'UTR 0.54 TCGA-KU-A66S-01 15 85188753 85188753 G A WDR73 Silent p.L278L 0.35 TCGA-KU-A66S-01 15 86123873 86123873 C G AKAP13 Missense_Mutation p.H858Q 0.14 deleterious_low_confidence(0.02) benign(0) TCGA-KU-A66S-01 15 89398750 89398750 T A ACAN Silent p.S978S 0.33 TCGA-KU-A66S-01 16 17353124 17353124 C T XYLT1 Missense_Mutation p.G212S 0.17 tolerated_low_confidence(0.75) benign(0.004) TCGA-KU-A66S-01 16 1837710 1837711 - G NUBP2 Frame_Shift_Ins p.E125Gfs*16 0.25 TCGA-KU-A66S-01 16 2139988 2139988 C G PKD1 Missense_Mutation p.V4218L 0.16 benign(0) TCGA-KU-A66S-01 16 22268648 22268648 C G EEF2K Silent p.L281L 0.07 TCGA-KU-A66S-01 16 2259336 2259336 C T MLST8 3'UTR 0.16 TCGA-KU-A66S-01 16 23536649 23536649 T A EARS2 Missense_Mutation p.E468D 0.38 tolerated(0.47) benign(0.008) TCGA-KU-A66S-01 16 27363900 27363900 C T IL4R Missense_Mutation p.R185C 0.16 tolerated(0.05) possibly_damaging(0.456) TCGA-KU-A66S-01 16 29828555 29828555 T - PAGR1 Frame_Shift_Del p.F170Lfs*6 0.21 TCGA-KU-A66S-01 16 30749037 30749037 C G SRCAP Missense_Mutation p.A2559G 0.04 unknown(0) TCGA-KU-A66S-01 16 31046317 31046317 G T STX4 Missense_Mutation p.D112Y 0.16 deleterious(0) probably_damaging(0.975) TCGA-KU-A66S-01 16 31075521 31075521 G C ZNF668 Missense_Mutation p.P110R 0.11 tolerated(0.29) benign(0.171) TCGA-KU-A66S-01 16 31202320 31202320 G C FUS Missense_Mutation p.G477A 0.13 tolerated_low_confidence(0.27) probably_damaging(0.91) TCGA-KU-A66S-01 16 3727627 3727627 C A TRAP1 Missense_Mutation p.E192D 0.13 tolerated(0.43) benign(0.013) TCGA-KU-A66S-01 16 56624942 56624942 G T MT3 3'UTR 0.40 TCGA-KU-A66S-01 16 57760127 57760127 C G CCDC135 Missense_Mutation p.R636G 0.04 deleterious(0) possibly_damaging(0.515) TCGA-KU-A66S-01 16 57803506 57803506 C G KIFC3 Splice_Site p.X406_splice 0.27 TCGA-KU-A66S-01 16 81077118 81077118 G C ATMIN Missense_Mutation p.G339R 0.09 tolerated(0.06) benign(0.178) TCGA-KU-A66S-01 16 84163701 84163701 G C HSDL1 Missense_Mutation p.H186D 0.05 deleterious(0) benign(0.016) TCGA-KU-A66S-01 17 10409371 10409371 G C MYH1 Missense_Mutation p.H672D 0.36 deleterious(0) probably_damaging(0.977) TCGA-KU-A66S-01 17 11738100 11738100 A T DNAH9 Missense_Mutation p.K3131M 0.42 probably_damaging(0.98) TCGA-KU-A66S-01 17 1375249 1375249 C G MYO1C Missense_Mutation p.R658P 0.06 deleterious(0) probably_damaging(0.973) TCGA-KU-A66S-01 17 26677586 26677586 G A POLDIP2 Missense_Mutation p.R263C 0.10 deleterious(0.05) possibly_damaging(0.858) TCGA-KU-A66S-01 17 28030080 28030080 G C SSH2 Missense_Mutation p.S36R 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-KU-A66S-01 17 29161400 29161400 C G ATAD5 Missense_Mutation p.P101A 0.06 tolerated(0.07) benign(0.038) TCGA-KU-A66S-01 17 29663905 29663905 T C NF1 Missense_Mutation p.C2134R 0.50 deleterious(0) probably_damaging(0.982) TCGA-KU-A66S-01 17 29851008 29851008 T G RAB11FIP4 Missense_Mutation p.V376G 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-KU-A66S-01 17 33521019 33521019 C A SLC35G3 Missense_Mutation p.R103L 0.39 deleterious(0) benign(0.262) TCGA-KU-A66S-01 17 33521020 33521020 G A SLC35G3 Missense_Mutation p.R103W 0.39 deleterious(0.02) benign(0.001) TCGA-KU-A66S-01 17 34398365 34398365 C A CCL18 Silent p.V78V 0.15 TCGA-KU-A66S-01 17 35297614 35297614 C G LHX1 Missense_Mutation p.C66W 0.46 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 17 35343985 35343985 C T AATF Missense_Mutation p.P301L 0.17 deleterious(0) benign(0.314) TCGA-KU-A66S-01 17 40629736 40629736 G C ATP6V0A1 Missense_Mutation p.G168A 0.10 tolerated(0.54) benign(0.03) TCGA-KU-A66S-01 17 40735595 40735595 C G FAM134C Missense_Mutation p.R244P 0.07 tolerated(0.12) possibly_damaging(0.575) TCGA-KU-A66S-01 17 40837111 40837111 C G CNTNAP1 Missense_Mutation p.R156G 0.05 tolerated(0.16) benign(0.027) TCGA-KU-A66S-01 17 41939211 41939211 G T CD300LG Missense_Mutation p.V311L 0.38 tolerated(0.25) benign(0.002) TCGA-KU-A66S-01 17 42428423 42428423 C G GRN Missense_Mutation p.H243D 0.08 deleterious(0) probably_damaging(0.969) TCGA-KU-A66S-01 17 43173654 43173654 G C NMT1 Splice_Site p.X199_splice 0.08 TCGA-KU-A66S-01 17 43190368 43190368 C A PLCD3 Missense_Mutation p.R714L 0.34 tolerated(0.57) benign(0.313) TCGA-KU-A66S-01 17 4342975 4342975 G C SPNS3 Missense_Mutation p.E74D 0.33 tolerated(0.11) benign(0.006) TCGA-KU-A66S-01 17 45017945 45017945 C G GOSR2 Missense_Mutation p.A203G 0.07 tolerated_low_confidence(0.48) benign(0.006) TCGA-KU-A66S-01 17 46805567 46805567 T G HOXB13 Missense_Mutation p.Y130S 0.43 deleterious(0) probably_damaging(0.997) TCGA-KU-A66S-01 17 4797387 4797387 G A MINK1 Missense_Mutation p.R890H 0.39 deleterious(0.01) possibly_damaging(0.813) TCGA-KU-A66S-01 17 5012344 5012344 G C ZNF232 Missense_Mutation p.P168A 0.21 deleterious(0.03) possibly_damaging(0.728) TCGA-KU-A66S-01 17 5276627 5276627 C A RABEP1 Silent p.R635R 0.52 TCGA-KU-A66S-01 17 5329382 5329382 C T RPAIN Silent p.L135L 0.38 TCGA-KU-A66S-01 17 56060674 56060674 A GG VEZF1 Frame_Shift_Ins p.D39Rfs*28 0.25 TCGA-KU-A66S-01 17 58258804 58258804 C G USP32 Missense_Mutation p.E1477Q 0.09 tolerated_low_confidence(0.38) benign(0.104) TCGA-KU-A66S-01 17 60107010 60107010 C G MED13 Missense_Mutation p.R392T 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-KU-A66S-01 17 61787874 61787874 G C STRADA Missense_Mutation p.I186M 0.15 tolerated(0.12) probably_damaging(0.987) TCGA-KU-A66S-01 17 61787903 61787903 G C STRADA Missense_Mutation p.Q177E 0.12 tolerated(0.28) possibly_damaging(0.489) TCGA-KU-A66S-01 17 62552006 62552006 C G SMURF2 Silent p.G514G 0.11 TCGA-KU-A66S-01 17 65026938 65026938 G C CACNG4 Missense_Mutation p.A268P 0.11 tolerated(0.17) benign(0.005) TCGA-KU-A66S-01 17 66551869 66551869 G C FAM20A Nonsense_Mutation p.Y140* 0.12 TCGA-KU-A66S-01 17 67513736 67513736 G C MAP2K6 Silent p.G76G 0.13 TCGA-KU-A66S-01 17 6939846 6939846 G T SLC16A13 Missense_Mutation p.A49S 0.36 tolerated(0.51) benign(0.061) TCGA-KU-A66S-01 17 7317762 7317762 C G NLGN2 Missense_Mutation p.A203G 0.11 deleterious(0.05) probably_damaging(0.997) TCGA-KU-A66S-01 17 7401407 7401407 C G POLR2A Missense_Mutation p.L405V 0.06 probably_damaging(0.995) TCGA-KU-A66S-01 17 78188108 78188108 C G SGSH Missense_Mutation p.A176P 0.08 deleterious(0.02) possibly_damaging(0.604) TCGA-KU-A66S-01 17 7951880 7951880 C G ALOX15B Missense_Mutation p.I676M 0.08 deleterious(0.01) benign(0.271) TCGA-KU-A66S-01 17 8078043 8078043 C G TMEM107 Intron 0.14 TCGA-KU-A66S-01 17 8785008 8785008 G T PIK3R5 Missense_Mutation p.T774K 0.33 tolerated(0.4) benign(0.44) TCGA-KU-A66S-01 17 96936 96936 C G RPH3AL Missense_Mutation p.E193D 0.14 tolerated(0.32) benign(0.047) TCGA-KU-A66S-01 17 9846526 9846526 C A GAS7 Missense_Mutation p.G215C 0.38 deleterious(0.02) probably_damaging(0.965) TCGA-KU-A66S-01 18 2847887 2847887 A T EMILIN2 Missense_Mutation p.Y72F 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-KU-A66S-01 18 33721123 33721123 G A ELP2 Missense_Mutation p.D248N 0.33 deleterious(0.01) possibly_damaging(0.821) TCGA-KU-A66S-01 18 44775084 44775084 G A SKOR2 Silent p.G157G 0.50 TCGA-KU-A66S-01 18 52265330 52265330 C G DYNAP Missense_Mutation p.T196S 0.09 tolerated(0.74) unknown(0) TCGA-KU-A66S-01 18 5415927 5415927 C A EPB41L3 Missense_Mutation p.A653S 0.40 tolerated(0.25) probably_damaging(0.976) TCGA-KU-A66S-01 18 59854900 59854900 G A KIAA1468 Silent p.S54S 0.20 TCGA-KU-A66S-01 18 61232769 61232769 G C SERPINB12 Missense_Mutation p.R246T 0.06 deleterious(0.04) benign(0.014) TCGA-KU-A66S-01 18 670789 670789 C G TYMS Missense_Mutation p.D218E 0.04 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 18 74637193 74637193 A T ZNF236 Missense_Mutation p.K1235M 0.43 tolerated(0.09) probably_damaging(0.999) TCGA-KU-A66S-01 19 10445934 10445934 C A ICAM3 Missense_Mutation p.A249S 0.33 deleterious(0.04) benign(0.209) TCGA-KU-A66S-01 19 10602293 10602293 C T KEAP1 Missense_Mutation p.G429S 0.21 deleterious(0) probably_damaging(0.979) TCGA-KU-A66S-01 19 10602878 10602878 G A KEAP1 Missense_Mutation p.R234W 0.20 deleterious(0) probably_damaging(0.96) TCGA-KU-A66S-01 19 12848341 12848342 - G ASNA1 Frame_Shift_Ins p.V10Gfs*2 0.47 TCGA-KU-A66S-01 19 14552082 14552082 T G PKN1 Missense_Mutation p.L56R 0.36 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 19 18119172 18119172 C T ARRDC2 Missense_Mutation p.A18V 0.29 tolerated(0.3) benign(0.005) TCGA-KU-A66S-01 19 19345864 19345864 G T NCAN Missense_Mutation p.C1070F 0.32 deleterious(0) probably_damaging(0.994) TCGA-KU-A66S-01 19 20307969 20307969 G A ZNF486 Silent p.Q150Q 0.32 TCGA-KU-A66S-01 19 2110192 2110192 G C AP3D1 Silent p.T1069T 0.07 TCGA-KU-A66S-01 19 21299746 21299746 G C ZNF714 Silent p.V92V 0.15 TCGA-KU-A66S-01 19 22157366 22157366 C T ZNF208 Missense_Mutation p.C157Y 0.40 tolerated(1) benign(0.008) TCGA-KU-A66S-01 19 37698033 37698033 C A ZNF585B 5'UTR 0.43 TCGA-KU-A66S-01 19 3907813 3907813 G T ATCAY Missense_Mutation p.S147I 0.37 tolerated(0.15) benign(0.252) TCGA-KU-A66S-01 19 40336997 40336997 C G FBL 5'UTR 0.53 TCGA-KU-A66S-01 19 4171755 4171755 G T CREB3L3 Missense_Mutation p.R392L 0.12 tolerated(0.29) benign(0.003) TCGA-KU-A66S-01 19 42265998 42265998 G C CEACAM6 Silent p.G275G 0.05 TCGA-KU-A66S-01 19 43414865 43414865 C T PSG6 Silent p.R191R 0.44 TCGA-KU-A66S-01 19 44012063 44012063 C A ETHE1 Intron 0.22 TCGA-KU-A66S-01 19 44739783 44739783 G C ZNF227 Missense_Mutation p.R400S 0.17 deleterious(0.04) possibly_damaging(0.805) TCGA-KU-A66S-01 19 4529376 4529376 C A PLIN5 Intron 0.29 TCGA-KU-A66S-01 19 46198710 46198710 C T QPCTL Silent p.L123L 0.40 TCGA-KU-A66S-01 19 48646858 48646858 T C LIG1 Splice_Site p.X286_splice 0.38 TCGA-KU-A66S-01 19 49217150 49217150 C G MAMSTR Missense_Mutation p.E292D 0.09 deleterious_low_confidence(0) benign(0.217) TCGA-KU-A66S-01 19 49379131 49379131 C T PPP1R15A Silent p.S642S 0.33 TCGA-KU-A66S-01 19 51135875 51135875 C G SYT3 Silent p.G114G 0.68 TCGA-KU-A66S-01 19 51471413 51471414 - C KLK6 Intron 0.27 TCGA-KU-A66S-01 19 51633170 51633170 C T SIGLEC9 Intron 0.36 TCGA-KU-A66S-01 19 53762018 53762018 C A VN1R2 Missense_Mutation p.H130Q 0.38 deleterious(0.02) probably_damaging(0.964) TCGA-KU-A66S-01 19 54080353 54080353 T A ZNF331 Missense_Mutation p.I180N 0.43 deleterious(0) probably_damaging(0.998) TCGA-KU-A66S-01 19 54313468 54313468 C T NLRP12 Missense_Mutation p.R482Q 0.35 tolerated(0.15) benign(0.011) TCGA-KU-A66S-01 19 56180125 56180125 C G U2AF2 Missense_Mutation p.F304L 0.07 deleterious(0.04) benign(0.416) TCGA-KU-A66S-01 19 58579588 58579588 G C ZNF135 Missense_Mutation p.G603A 0.05 tolerated(0.25) possibly_damaging(0.671) TCGA-KU-A66S-01 1 11897460 11897460 G C CLCN6 Missense_Mutation p.E733D 0.09 tolerated(0.38) benign(0.017) TCGA-KU-A66S-01 1 12144558 12144558 G A TNFRSF8 Missense_Mutation p.S34N 0.34 tolerated(1) benign(0.002) TCGA-KU-A66S-01 1 1289842 1289842 C G MXRA8 Missense_Mutation p.E333Q 0.15 deleterious(0) probably_damaging(0.928) TCGA-KU-A66S-01 1 145580584 145580584 G T PIAS3 Missense_Mutation p.R295L 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-KU-A66S-01 1 147131637 147131637 C - ACP6 Frame_Shift_Del p.G118Afs*7 0.25 TCGA-KU-A66S-01 1 152282944 152282944 G C FLG Missense_Mutation p.A1473G 0.31 benign(0.364) TCGA-KU-A66S-01 1 153391773 153391773 G A S100A7A Silent p.G98G 0.32 TCGA-KU-A66S-01 1 153640104 153640104 G C ILF2 Silent p.S107S 0.11 TCGA-KU-A66S-01 1 154306600 154306600 C T ATP8B2 Missense_Mutation p.P236S 0.40 tolerated(0.13) probably_damaging(0.999) TCGA-KU-A66S-01 1 154923955 154923955 C G PBXIP1 Missense_Mutation p.E79Q 0.04 tolerated(0.08) possibly_damaging(0.79) TCGA-KU-A66S-01 1 158576928 158576928 C A OR10Z1 Missense_Mutation p.Q234K 0.36 tolerated(0.26) benign(0.001) TCGA-KU-A66S-01 1 159778940 159778940 C A FCRL6 Missense_Mutation p.A170D 0.33 deleterious(0.03) possibly_damaging(0.824) TCGA-KU-A66S-01 1 159889093 159889093 G C TAGLN2 Silent p.L143L 0.08 TCGA-KU-A66S-01 1 159912857 159912857 C G IGSF9 Missense_Mutation p.G48A 0.40 tolerated(0.32) benign(0.005) TCGA-KU-A66S-01 1 161198034 161198034 G A TOMM40L Silent p.E181E 0.28 TCGA-KU-A66S-01 1 164776830 164776830 T - PBX1 Frame_Shift_Del p.F252Sfs*18 0.18 TCGA-KU-A66S-01 1 165218793 165218793 G T LMX1A Missense_Mutation p.H116Q 0.45 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 1 16532501 16532501 C A ARHGEF19 Missense_Mutation p.C459F 0.43 deleterious(0) possibly_damaging(0.607) TCGA-KU-A66S-01 1 17085003 17085003 C - MST1L RNA 0.10 TCGA-KU-A66S-01 1 176668450 176668450 G T PAPPA2 Missense_Mutation p.L987F 0.42 deleterious(0) possibly_damaging(0.801) TCGA-KU-A66S-01 1 181686385 181686385 C G CACNA1E Missense_Mutation p.A491G 0.08 deleterious(0) benign(0.364) TCGA-KU-A66S-01 1 184792874 184792874 G C FAM129A Missense_Mutation p.I240M 0.18 deleterious(0) possibly_damaging(0.885) TCGA-KU-A66S-01 1 1961046 1961046 C G GABRD Missense_Mutation p.P302A 0.49 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 1 197390551 197390551 G C CRB1 Silent p.V531V 0.13 TCGA-KU-A66S-01 1 200969636 200969636 C A KIF21B Missense_Mutation p.A523S 0.32 tolerated(0.81) benign(0.001) TCGA-KU-A66S-01 1 202724560 202724560 C A KDM5B Missense_Mutation p.W459C 0.06 deleterious(0) benign(0.424) TCGA-KU-A66S-01 1 20490636 20490636 C A PLA2G2C Missense_Mutation p.G100C 0.25 deleterious(0) probably_damaging(0.968) TCGA-KU-A66S-01 1 21099981 21099981 C A HP1BP3 Missense_Mutation p.R158L 0.39 tolerated(0.08) probably_damaging(0.988) TCGA-KU-A66S-01 1 220279318 220279318 G T IARS2 Missense_Mutation p.M384I 0.38 tolerated(0.09) possibly_damaging(0.521) TCGA-KU-A66S-01 1 228559510 228559510 G C OBSCN Missense_Mutation p.G7968R 0.10 benign(0.439) TCGA-KU-A66S-01 1 229567637 229567637 G C ACTA1 Missense_Mutation p.A274G 0.10 tolerated_low_confidence(0.26) possibly_damaging(0.889) TCGA-KU-A66S-01 1 240256745 240256745 C A FMN2 Silent p.R446R 0.33 TCGA-KU-A66S-01 1 241680534 241680534 G C FH Missense_Mutation p.T72S 0.10 deleterious(0.03) possibly_damaging(0.907) TCGA-KU-A66S-01 1 248789965 248789965 C T OR2T11 Silent p.L155L 0.42 TCGA-KU-A66S-01 1 27101099 27101099 C T ARID1A Nonsense_Mutation p.R1461* 0.65 TCGA-KU-A66S-01 1 3712512 3712512 C T LRRC47 Missense_Mutation p.A177T 0.47 tolerated(0.4) possibly_damaging(0.628) TCGA-KU-A66S-01 1 39322728 39322728 G C RRAGC Missense_Mutation p.N88K 0.12 deleterious(0.01) benign(0.31) TCGA-KU-A66S-01 1 39750068 39750068 G C MACF1 Missense_Mutation p.G372R 0.08 benign(0.35) TCGA-KU-A66S-01 1 44424164 44424164 T C IPO13 Missense_Mutation p.L594P 0.24 deleterious(0.01) possibly_damaging(0.885) TCGA-KU-A66S-01 1 54606862 54606862 G C CDCP2 Silent p.P224P 0.07 TCGA-KU-A66S-01 1 6311533 6311533 C A GPR153 Missense_Mutation p.V282L 0.41 tolerated(0.15) probably_damaging(0.999) TCGA-KU-A66S-01 1 65129394 65129394 G C CACHD1 Missense_Mutation p.M605I 0.13 tolerated(0.06) benign(0.081) TCGA-KU-A66S-01 1 75038820 75038820 G T C1orf173 Silent p.P858P 0.41 TCGA-KU-A66S-01 1 79093737 79093737 G A IFI44L Missense_Mutation p.R46H 0.35 tolerated(0.87) benign(0) TCGA-KU-A66S-01 1 79357359 79357359 G A ELTD1 Silent p.A620A 0.52 TCGA-KU-A66S-01 1 8073611 8073611 G C ERRFI1 Missense_Mutation p.Q350E 0.10 deleterious(0) probably_damaging(0.995) TCGA-KU-A66S-01 1 84971808 84971808 G T GNG5 5'UTR 0.40 TCGA-KU-A66S-01 1 86362059 86362059 G C COL24A1 Missense_Mutation p.Q938E 0.40 tolerated(0.96) benign(0.101) TCGA-KU-A66S-01 1 86591069 86591069 A G COL24A1 Missense_Mutation p.L317P 0.35 tolerated(0.12) benign(0.006) TCGA-KU-A66S-01 1 89272996 89272996 G C PKN2 Missense_Mutation p.D602H 0.07 tolerated(0.08) benign(0.009) TCGA-KU-A66S-01 1 9034830 9034830 G T CA6 3'Flank 0.38 TCGA-KU-A66S-01 1 92733679 92733679 C G GLMN Missense_Mutation p.V331L 0.37 tolerated(0.67) benign(0.011) TCGA-KU-A66S-01 1 99762359 99762359 G T LPPR4 Missense_Mutation p.E158D 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-KU-A66S-01 20 1276928 1276928 G T SNPH Intron 0.46 TCGA-KU-A66S-01 20 1592331 1592331 C G SIRPB1 Intron 0.31 TCGA-KU-A66S-01 20 3171381 3171381 C T DDRGK1 Missense_Mutation p.R288Q 0.12 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 20 31878868 31878868 C G BPIFB1 Missense_Mutation p.D157E 0.08 tolerated(0.32) benign(0.016) TCGA-KU-A66S-01 20 32005704 32005704 C G SNTA1 Silent p.P174P 0.09 TCGA-KU-A66S-01 20 33329604 33329604 C G NCOA6 Missense_Mutation p.E1486Q 0.12 probably_damaging(0.914) TCGA-KU-A66S-01 20 35060693 35060693 G C DLGAP4 Silent p.G191G 0.07 TCGA-KU-A66S-01 20 37182548 37182548 C G RALGAPB Silent p.A1067A 0.20 TCGA-KU-A66S-01 20 39797792 39797792 G A PLCG1 Missense_Mutation p.V853M 0.42 tolerated(0.09) benign(0) TCGA-KU-A66S-01 20 40116420 40116420 G C CHD6 Missense_Mutation p.P629R 0.10 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 20 43132505 43132505 C G SERINC3 Missense_Mutation p.D336H 0.07 deleterious(0.03) benign(0.009) TCGA-KU-A66S-01 20 44108589 44108589 G C WFDC2 Missense_Mutation p.E77D 0.14 tolerated(0.19) benign(0.038) TCGA-KU-A66S-01 20 48744575 48744575 G C TMEM189-UBE2V1 Missense_Mutation p.P210A 0.12 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-KU-A66S-01 20 50235319 50235319 C G ATP9A Missense_Mutation p.E744D 0.18 tolerated(0.1) benign(0.045) TCGA-KU-A66S-01 20 58342406 58342406 C G PHACTR3 Missense_Mutation p.T236S 0.27 tolerated(0.47) benign(0.05) TCGA-KU-A66S-01 20 61458596 61458596 G C COL9A3 Missense_Mutation p.D266H 0.20 deleterious(0.01) unknown(0) TCGA-KU-A66S-01 20 61834856 61834856 C G YTHDF1 Missense_Mutation p.A146P 0.16 tolerated(0.1) benign(0.081) TCGA-KU-A66S-01 20 61916198 61916198 C G ARFGAP1 Intron 0.24 TCGA-KU-A66S-01 20 853762 853762 C G ANGPT4 Silent p.G451G 0.23 TCGA-KU-A66S-01 21 11039132 11039132 C A BAGE2 RNA 0.07 TCGA-KU-A66S-01 21 31692245 31692245 C A KRTAP26-1 Nonsense_Mutation p.G37* 0.38 TCGA-KU-A66S-01 21 31986109 31986110 CA - KRTAP6-1 Frame_Shift_Del p.C38Wfs*59 0.36 TCGA-KU-A66S-01 21 34927039 34927039 C G SON Missense_Mutation p.H1834Q 0.09 unknown(0) TCGA-KU-A66S-01 21 40627656 40627656 G C BRWD1 Missense_Mutation p.P724A 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-KU-A66S-01 21 42866331 42866331 C T TMPRSS2 Missense_Mutation p.V101I 0.41 tolerated(0.16) benign(0.207) TCGA-KU-A66S-01 21 43327243 43327243 G C C2CD2 Silent p.S392S 0.08 TCGA-KU-A66S-01 21 47831330 47831330 G T PCNT Silent p.G1781G 0.44 TCGA-KU-A66S-01 22 17589625 17589625 G C IL17RA Missense_Mutation p.E506Q 0.14 deleterious(0.02) possibly_damaging(0.72) TCGA-KU-A66S-01 22 18909861 18909861 C T PRODH Silent p.T302T 0.43 TCGA-KU-A66S-01 22 23603645 23603645 A G BCR Missense_Mutation p.H557R 0.40 deleterious(0) possibly_damaging(0.727) TCGA-KU-A66S-01 22 30691032 30691032 T C TBC1D10A Silent p.L186L 0.39 TCGA-KU-A66S-01 22 30975190 30975190 C G PES1 Missense_Mutation p.E485D 0.30 tolerated(0.48) benign(0.004) TCGA-KU-A66S-01 22 31006904 31006904 C G TCN2 Missense_Mutation p.H37Q 0.10 tolerated(0.37) benign(0.002) TCGA-KU-A66S-01 22 31335616 31335616 G C MORC2 Silent p.A293A 0.08 TCGA-KU-A66S-01 22 37159044 37159044 C G IFT27 Silent p.G122G 0.16 TCGA-KU-A66S-01 22 37962592 37962592 G T CDC42EP1 Missense_Mutation p.R79L 0.30 tolerated(0.1) possibly_damaging(0.623) TCGA-KU-A66S-01 22 38040921 38040921 G A SH3BP1 Silent p.S244S 0.32 TCGA-KU-A66S-01 22 38211679 38211679 C A GCAT Missense_Mutation p.T301K 0.04 deleterious(0) probably_damaging(0.975) TCGA-KU-A66S-01 22 38891843 38891843 C G DDX17 Missense_Mutation p.G280R 0.05 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 22 42418255 42418255 G T WBP2NL Missense_Mutation p.A137S 0.28 tolerated(0.47) possibly_damaging(0.617) TCGA-KU-A66S-01 22 42606258 42606258 G A TCF20 Missense_Mutation p.S1685L 0.20 probably_damaging(0.992) TCGA-KU-A66S-01 22 46712087 46712087 G C GTSE1 Missense_Mutation p.E404Q 0.09 tolerated(0.43) possibly_damaging(0.529) TCGA-KU-A66S-01 22 49103578 49103578 G - FAM19A5 Frame_Shift_Del p.E106Kfs*6 0.30 TCGA-KU-A66S-01 2 101971791 101971791 G C CREG2 Missense_Mutation p.Q217E 0.19 deleterious(0.01) benign(0.055) TCGA-KU-A66S-01 2 120012260 120012260 G C STEAP3 Missense_Mutation p.V351L 0.12 deleterious(0.02) benign(0.134) TCGA-KU-A66S-01 2 120439004 120439004 G T TMEM177 Missense_Mutation p.G192V 0.41 deleterious(0) probably_damaging(0.952) TCGA-KU-A66S-01 2 133971304 133971304 G T NCKAP5 Missense_Mutation p.T64K 0.38 tolerated(1) benign(0.013) TCGA-KU-A66S-01 2 136467716 136467716 C A R3HDM1 Missense_Mutation p.P849Q 0.43 tolerated(0.08) probably_damaging(0.979) TCGA-KU-A66S-01 2 136566390 136566390 C G LCT Missense_Mutation p.S1176T 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-KU-A66S-01 2 155555414 155555414 C T KCNJ3 Missense_Mutation p.R43W 0.08 deleterious(0) possibly_damaging(0.863) TCGA-KU-A66S-01 2 160806213 160806213 G C PLA2R1 Silent p.L1205L 0.06 TCGA-KU-A66S-01 2 1652399 1652399 G A PXDN Silent p.H1051H 0.14 TCGA-KU-A66S-01 2 166848756 166848756 G T SCN1A Missense_Mutation p.L1677I 0.39 deleterious(0.01) probably_damaging(1) TCGA-KU-A66S-01 2 167298231 167298231 G T SCN7A Missense_Mutation p.P611Q 0.51 deleterious(0.01) probably_damaging(0.983) TCGA-KU-A66S-01 2 168102265 168102265 C G XIRP2 Missense_Mutation p.L1455V 0.52 probably_damaging(0.999) TCGA-KU-A66S-01 2 179433972 179433972 C T TTN Silent p.G25629G 0.38 TCGA-KU-A66S-01 2 179435320 179435320 C G TTN Missense_Mutation p.G25180A 0.09 TCGA-KU-A66S-01 2 179437943 179437943 T C TTN Missense_Mutation p.S24306G 0.36 TCGA-KU-A66S-01 2 179441372 179441372 T C TTN Missense_Mutation p.K23200R 0.35 TCGA-KU-A66S-01 2 179441374 179441374 G T TTN Nonsense_Mutation p.C23199* 0.35 TCGA-KU-A66S-01 2 179452804 179452804 C T TTN Silent p.A21110A 0.07 TCGA-KU-A66S-01 2 179486220 179486221 - A TTN Frame_Shift_Ins p.G15111Wfs*7 0.32 TCGA-KU-A66S-01 2 179594422 179594422 C A TTN Silent p.T6186T 0.37 TCGA-KU-A66S-01 2 179610276 179610276 A C TTN Intron 0.29 TCGA-KU-A66S-01 2 1926596 1926596 C G MYT1L Silent p.V315V 0.05 TCGA-KU-A66S-01 2 197183283 197183283 A G HECW2 Silent p.A777A 0.42 TCGA-KU-A66S-01 2 204039942 204039942 G T NBEAL1 Silent p.A2103A 0.40 TCGA-KU-A66S-01 2 208795728 208795728 C A PLEKHM3 Missense_Mutation p.R603L 0.36 deleterious(0) benign(0.011) TCGA-KU-A66S-01 2 21236290 21236290 C G APOB Missense_Mutation p.A1320P 0.07 benign(0.018) TCGA-KU-A66S-01 2 216211560 216211560 C G ATIC Missense_Mutation p.L467V 0.18 deleterious(0) possibly_damaging(0.703) TCGA-KU-A66S-01 2 228163400 228163400 G A COL4A3 Missense_Mutation p.A1252T 0.26 unknown(0) TCGA-KU-A66S-01 2 234357766 234357766 G C DGKD Missense_Mutation p.E544D 0.04 tolerated(0.25) possibly_damaging(0.473) TCGA-KU-A66S-01 2 236659080 236659080 C T AGAP1 Silent p.Y207Y 0.32 TCGA-KU-A66S-01 2 33588469 33588469 G A LTBP1 Missense_Mutation p.C1428Y 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-KU-A66S-01 2 33952898 33952898 G T AC009499.1 Intron 0.50 TCGA-KU-A66S-01 2 38302272 38302272 A C CYP1B1 Missense_Mutation p.I87S 0.44 deleterious(0) probably_damaging(0.995) TCGA-KU-A66S-01 2 73678013 73678013 G T ALMS1 Missense_Mutation p.L1452F 0.41 possibly_damaging(0.636) TCGA-KU-A66S-01 2 74273794 74273794 C G TET3 Missense_Mutation p.S115R 0.07 tolerated(0.14) benign(0.002) TCGA-KU-A66S-01 2 74752215 74752215 C G DQX1 Missense_Mutation p.E118Q 0.10 deleterious(0.05) possibly_damaging(0.788) TCGA-KU-A66S-01 2 89082254 89082254 C A ANKRD36BP2 RNA 0.33 TCGA-KU-A66S-01 2 96951035 96951035 C T SNRNP200 Silent p.G1349G 0.32 TCGA-KU-A66S-01 2 98920189 98920189 A T VWA3B Missense_Mutation p.I1149F 0.44 deleterious(0) probably_damaging(0.99) TCGA-KU-A66S-01 3 102157397 102157397 C A ZPLD1 Missense_Mutation p.N38K 0.16 deleterious(0.04) possibly_damaging(0.68) TCGA-KU-A66S-01 3 10861256 10861256 T C SLC6A11 Silent p.C121C 0.43 TCGA-KU-A66S-01 3 122964834 122964834 C T SEC22A Silent p.G210G 0.40 TCGA-KU-A66S-01 3 125833488 125833488 C T ALDH1L1 Missense_Mutation p.S675N 0.22 deleterious(0.01) benign(0.379) TCGA-KU-A66S-01 3 12875547 12875547 C G CAND2 3'UTR 0.11 TCGA-KU-A66S-01 3 136573746 136573746 G C SLC35G2 Silent p.V148V 0.13 TCGA-KU-A66S-01 3 141497592 141497592 G C GRK7 Missense_Mutation p.A156P 0.08 tolerated(0.14) possibly_damaging(0.555) TCGA-KU-A66S-01 3 157921034 157921034 G T RSRC1 Missense_Mutation p.G165V 0.50 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-KU-A66S-01 3 164793736 164793736 A G SI Missense_Mutation p.I22T 0.35 deleterious(0.02) possibly_damaging(0.548) TCGA-KU-A66S-01 3 167278004 167278004 C G WDR49 Missense_Mutation p.D167H 0.49 tolerated(0.07) probably_damaging(0.944) TCGA-KU-A66S-01 3 167414881 167414881 T C PDCD10 Missense_Mutation p.I62V 0.36 tolerated(0.13) benign(0.014) TCGA-KU-A66S-01 3 179399665 179399665 G C USP13 Splice_Site p.X57_splice 0.07 TCGA-KU-A66S-01 3 184023942 184023942 A C PSMD2 Silent p.A601A 0.36 TCGA-KU-A66S-01 3 186303199 186303199 A G DNAJB11 3'UTR 0.35 TCGA-KU-A66S-01 3 193332690 193332690 C G OPA1 Missense_Mutation p.R71G 0.16 tolerated(0.11) benign(0.07) TCGA-KU-A66S-01 3 19479726 19479726 G A KCNH8 Silent p.S416S 0.13 TCGA-KU-A66S-01 3 196388068 196388068 C T NRROS Silent p.L518L 0.12 TCGA-KU-A66S-01 3 197762833 197762833 C G LMLN Missense_Mutation p.P633A 0.07 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 3 24009502 24009502 C G NR1D2 Missense_Mutation p.L511V 0.08 deleterious(0) probably_damaging(0.994) TCGA-KU-A66S-01 3 25635088 25635088 G T RARB Missense_Mutation p.G294V 0.44 deleterious(0.02) probably_damaging(1) TCGA-KU-A66S-01 3 38135260 38135260 T A DLEC1 Splice_Site p.X640_splice 0.41 TCGA-KU-A66S-01 3 38524872 38524872 G C ACVR2B 3'UTR 0.22 TCGA-KU-A66S-01 3 38640529 38640529 C G SCN5A Missense_Mutation p.E635Q 0.35 tolerated(0.21) possibly_damaging(0.825) TCGA-KU-A66S-01 3 38648258 38648258 G T SCN5A Missense_Mutation p.P348T 0.33 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 3 41266104 41266104 G A CTNNB1 Missense_Mutation p.G34E 0.30 deleterious(0.03) probably_damaging(0.993) TCGA-KU-A66S-01 3 42560751 42560751 C T VIPR1 Missense_Mutation p.P74L 0.48 deleterious(0.03) probably_damaging(0.994) TCGA-KU-A66S-01 3 42728008 42728008 C G KLHL40 Missense_Mutation p.R300G 0.27 tolerated(0.46) benign(0.002) TCGA-KU-A66S-01 3 47456314 47456314 C G SCAP Intron 0.10 TCGA-KU-A66S-01 3 48683174 48683174 C G CELSR3 Splice_Site p.X2530_splice 0.11 TCGA-KU-A66S-01 3 49061949 49061949 C G IMPDH2 Missense_Mutation p.G501A 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-KU-A66S-01 3 49397732 49397732 T A RHOA Missense_Mutation p.K164N 0.44 tolerated(0.35) benign(0.009) TCGA-KU-A66S-01 3 49929227 49929227 G C MST1R Missense_Mutation p.Q1106E 0.05 tolerated(0.08) benign(0.232) TCGA-KU-A66S-01 3 51430355 51430355 C G RBM15B Missense_Mutation p.H509D 0.12 tolerated(0.08) benign(0.013) TCGA-KU-A66S-01 3 52394096 52394096 G C DNAH1 Splice_Site p.X1524_splice 0.06 TCGA-KU-A66S-01 3 52433085 52433085 G C DNAH1 Missense_Mutation p.W4103C 0.09 probably_damaging(1) TCGA-KU-A66S-01 3 52436615 52436615 C G BAP1 Intron 0.08 TCGA-KU-A66S-01 3 52867391 52867391 C T TMEM110-MUSTN1 Silent p.E356E 0.30 TCGA-KU-A66S-01 3 62177184 62177184 A G PTPRG Missense_Mutation p.N359D 0.19 deleterious(0) possibly_damaging(0.88) TCGA-KU-A66S-01 3 64084932 64084932 G C PRICKLE2 Missense_Mutation p.T777S 0.07 tolerated(0.28) benign(0.172) TCGA-KU-A66S-01 3 6903556 6903556 G A GRM7 Missense_Mutation p.V161I 0.40 deleterious(0) benign(0.109) TCGA-KU-A66S-01 4 104070429 104070429 T A CENPE Missense_Mutation p.E1178V 0.50 possibly_damaging(0.779) TCGA-KU-A66S-01 4 110932604 110932604 C G EGF Missense_Mutation p.T1206S 0.14 tolerated_low_confidence(0.08) benign(0.003) TCGA-KU-A66S-01 4 114279688 114279688 C G ANK2 Missense_Mutation p.P3305R 0.21 possibly_damaging(0.813) TCGA-KU-A66S-01 4 123249472 123249472 G C KIAA1109 Missense_Mutation p.D3737H 0.11 benign(0.33) TCGA-KU-A66S-01 4 126371172 126371172 A C FAT4 Missense_Mutation p.K3001Q 0.39 benign(0.035) TCGA-KU-A66S-01 4 130027803 130027803 G A C4orf33 Splice_Site p.X81_splice 0.14 TCGA-KU-A66S-01 4 134072817 134072817 C G PCDH10 Missense_Mutation p.Q508E 0.41 tolerated(0.16) probably_damaging(0.993) TCGA-KU-A66S-01 4 134073851 134073851 C G PCDH10 Silent p.P852P 0.06 TCGA-KU-A66S-01 4 140262203 140262203 C T NAA15 Nonsense_Mutation p.R128* 0.25 TCGA-KU-A66S-01 4 149073729 149073729 G C NR3C2 Missense_Mutation p.L801V 0.08 tolerated(0.12) possibly_damaging(0.466) TCGA-KU-A66S-01 4 156268970 156268970 G C MAP9 Missense_Mutation p.P637A 0.15 deleterious(0.01) probably_damaging(1) TCGA-KU-A66S-01 4 162697188 162697188 T G FSTL5 Missense_Mutation p.N150H 0.42 deleterious(0.03) benign(0.028) TCGA-KU-A66S-01 4 174312580 174312580 C G SCRG1 Splice_Site 0.19 TCGA-KU-A66S-01 4 17524557 17524557 C G CLRN2 Silent p.A108A 0.08 TCGA-KU-A66S-01 4 2746144 2746144 G A TNIP2 Silent p.A332A 0.33 TCGA-KU-A66S-01 4 3129100 3129100 A T HTT Silent p.T504T 0.43 TCGA-KU-A66S-01 4 46099276 46099276 T A GABRG1 Silent p.T65T 0.28 TCGA-KU-A66S-01 4 57797436 57797436 C G REST Silent p.P804P 0.19 TCGA-KU-A66S-01 4 68708314 68708314 T G TMPRSS11D Missense_Mutation p.L93F 0.35 deleterious(0.02) probably_damaging(1) TCGA-KU-A66S-01 4 70346228 70346228 G T UGT2B4 3'UTR 0.43 TCGA-KU-A66S-01 4 70350984 70350984 G T UGT2B4 Missense_Mutation p.H418N 0.39 tolerated(1) benign(0.001) TCGA-KU-A66S-01 4 8218736 8218736 C T SH3TC1 Silent p.P227P 0.38 TCGA-KU-A66S-01 4 84255758 84255758 T A HPSE Missense_Mutation p.T60S 0.36 tolerated(0.07) possibly_damaging(0.715) TCGA-KU-A66S-01 4 871403 871403 C T GAK Missense_Mutation p.R619Q 0.07 deleterious(0.02) benign(0.378) TCGA-KU-A66S-01 4 89400632 89400632 C G HERC5 Missense_Mutation p.L571V 0.22 deleterious(0.04) benign(0.076) TCGA-KU-A66S-01 4 96163590 96163590 A G UNC5C Silent p.L366L 0.31 TCGA-KU-A66S-01 4 96761859 96761859 G T PDHA2 Missense_Mutation p.E186D 0.39 tolerated(0.3) benign(0.179) TCGA-KU-A66S-01 4 98480109 98480109 C A STPG2 3'UTR 0.50 TCGA-KU-A66S-01 5 115350190 115350190 C T AQPEP Missense_Mutation p.L806F 0.35 tolerated(0.12) benign(0.29) TCGA-KU-A66S-01 5 118835213 118835213 G C HSD17B4 Missense_Mutation p.A417P 0.04 tolerated(0.33) benign(0.004) TCGA-KU-A66S-01 5 131543487 131543487 C G P4HA2 Missense_Mutation p.E332Q 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-KU-A66S-01 5 135392397 135392397 C G TGFBI Missense_Mutation p.L531V 0.07 deleterious(0) probably_damaging(0.993) TCGA-KU-A66S-01 5 13859656 13859656 T A DNAH5 Missense_Mutation p.T1619S 0.17 possibly_damaging(0.621) TCGA-KU-A66S-01 5 140262214 140262214 G C PCDHA13 Missense_Mutation p.V121L 0.07 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-KU-A66S-01 5 140476315 140476315 G C PCDHB2 Missense_Mutation p.K647N 0.11 deleterious_low_confidence(0) possibly_damaging(0.744) TCGA-KU-A66S-01 5 140537796 140537796 G C PCDHB17 3'UTR 0.39 TCGA-KU-A66S-01 5 140616255 140616255 C T PCDHB18 RNA 0.29 TCGA-KU-A66S-01 5 140751546 140751546 G C PCDHGB3 Missense_Mutation p.E529Q 0.17 tolerated(1) benign(0.141) TCGA-KU-A66S-01 5 140762548 140762548 G C PCDHGA7 Missense_Mutation p.A28P 0.17 deleterious_low_confidence(0.01) benign(0.021) TCGA-KU-A66S-01 5 140768893 140768893 C G PCDHGB4 Missense_Mutation p.P481R 0.10 tolerated(0.38) possibly_damaging(0.493) TCGA-KU-A66S-01 5 140797444 140797444 G T PCDHGB7 Silent p.A6A 0.38 TCGA-KU-A66S-01 5 140812340 140812340 C G PCDHGA12 Missense_Mutation p.L672V 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-KU-A66S-01 5 143543740 143543740 T A YIPF5 Missense_Mutation p.M122L 0.38 tolerated(0.44) benign(0.018) TCGA-KU-A66S-01 5 154394648 154394648 C A KIF4B Missense_Mutation p.A410D 0.36 deleterious(0.01) possibly_damaging(0.739) TCGA-KU-A66S-01 5 156589514 156589514 C T FAM71B Missense_Mutation p.G588S 0.40 deleterious(0.05) possibly_damaging(0.447) TCGA-KU-A66S-01 5 161524859 161524859 C A GABRG2 Silent p.T181T 0.30 TCGA-KU-A66S-01 5 176684032 176684032 C T NSD1 Missense_Mutation p.H1616Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 5 176707798 176707798 G - NSD1 Frame_Shift_Del p.G1953Vfs*16 0.30 TCGA-KU-A66S-01 5 179762901 179762901 G C GFPT2 Silent p.A89A 0.16 TCGA-KU-A66S-01 5 32074069 32074069 C T PDZD2 Nonsense_Mutation p.R953* 0.09 TCGA-KU-A66S-01 5 33461810 33461810 G C TARS Missense_Mutation p.W563C 0.04 deleterious(0) possibly_damaging(0.637) TCGA-KU-A66S-01 5 36995843 36995843 G C NIPBL Missense_Mutation p.E1081Q 0.04 tolerated_low_confidence(0.06) possibly_damaging(0.554) TCGA-KU-A66S-01 5 41917317 41917317 G A C5orf51 Silent p.V267V 0.27 TCGA-KU-A66S-01 5 59940657 59940657 G C DEPDC1B Missense_Mutation p.D208E 0.09 deleterious(0.01) benign(0.195) TCGA-KU-A66S-01 5 71739685 71739685 G A ZNF366 Silent p.G711G 0.33 TCGA-KU-A66S-01 5 76028555 76028555 C G F2R Missense_Mutation p.Q169E 0.33 tolerated(0.98) benign(0.027) TCGA-KU-A66S-01 5 82789630 82789630 A G VCAN Missense_Mutation p.I210V 0.46 deleterious(0) probably_damaging(0.976) TCGA-KU-A66S-01 5 95072637 95072637 G C RHOBTB3 Silent p.G91G 0.13 TCGA-KU-A66S-01 6 106975295 106975295 G C AIM1 Missense_Mutation p.A1102P 0.13 tolerated(0.54) possibly_damaging(0.46) TCGA-KU-A66S-01 6 107955276 107955276 C G SOBP Missense_Mutation p.P410A 0.17 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 6 108497823 108497823 C G NR2E1 Missense_Mutation p.P126A 0.25 tolerated(0.07) benign(0.045) TCGA-KU-A66S-01 6 112471741 112471741 G A LAMA4 Silent p.A715A 0.21 TCGA-KU-A66S-01 6 134350375 134350375 C A SLC2A12 Missense_Mutation p.W196C 0.39 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 6 136560841 136560841 G C MTFR2 Missense_Mutation p.P211R 0.11 deleterious(0) probably_damaging(0.996) TCGA-KU-A66S-01 6 150005544 150005544 G C LATS1 Missense_Mutation p.H227Q 0.11 deleterious_low_confidence(0.05) possibly_damaging(0.649) TCGA-KU-A66S-01 6 151673115 151673115 G A AKAP12 Missense_Mutation p.E1197K 0.15 deleterious(0.04) benign(0.072) TCGA-KU-A66S-01 6 152163838 152163838 G T ESR1 Missense_Mutation p.V187L 0.34 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 6 152614863 152614863 G A SYNE1 Missense_Mutation p.L5958F 0.40 probably_damaging(0.999) TCGA-KU-A66S-01 6 152651592 152651592 G T SYNE1 Missense_Mutation p.T4743K 0.49 possibly_damaging(0.804) TCGA-KU-A66S-01 6 163483325 163483325 C A PACRG Silent p.V145V 0.30 TCGA-KU-A66S-01 6 20118762 20118762 A C MBOAT1 Missense_Mutation p.V306G 0.40 deleterious(0) probably_damaging(0.984) TCGA-KU-A66S-01 6 24588916 24588916 G C KIAA0319 Missense_Mutation p.T300R 0.39 tolerated(0.29) benign(0.013) TCGA-KU-A66S-01 6 29640516 29640516 G A ZFP57 Missense_Mutation p.H458Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 6 30128347 30128347 C T TRIM10 Missense_Mutation p.D97N 0.40 tolerated(0.5) benign(0.243) TCGA-KU-A66S-01 6 31691642 31691642 C G C6orf25 Silent p.L96L 0.06 TCGA-KU-A66S-01 6 32629760 32629760 G T HLA-DQB1 Silent p.P215P 0.34 TCGA-KU-A66S-01 6 33261401 33261401 C T RGL2 Silent p.L528L 0.33 TCGA-KU-A66S-01 6 43023334 43023335 - CGCAGT MRPL2 In_Frame_Ins p.L217_R218dup 0.31 TCGA-KU-A66S-01 6 46800830 46800830 G C MEP1A Missense_Mutation p.W388C 0.09 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 6 52141929 52141929 G - MCM3 Frame_Shift_Del p.T413Pfs*11 0.27 TCGA-KU-A66S-01 6 52960428 52960428 A G FBXO9 Missense_Mutation p.I401V 0.32 tolerated(1) benign(0.001) TCGA-KU-A66S-01 6 54212180 54212180 G A TINAG Missense_Mutation p.R255Q 0.42 deleterious(0) possibly_damaging(0.883) TCGA-KU-A66S-01 6 633040 633040 G C EXOC2 Missense_Mutation p.Q66E 0.17 tolerated(0.19) possibly_damaging(0.848) TCGA-KU-A66S-01 6 7583099 7583099 G C DSP Missense_Mutation p.K1868N 0.06 probably_damaging(0.996) TCGA-KU-A66S-01 6 76022999 76022999 G A FILIP1 Missense_Mutation p.S850F 0.36 deleterious(0.02) possibly_damaging(0.541) TCGA-KU-A66S-01 6 83847178 83847178 G C DOPEY1 Missense_Mutation p.M1139I 0.29 tolerated_low_confidence(0.19) benign(0) TCGA-KU-A66S-01 6 99912603 99912603 C G USP45 Missense_Mutation p.W395C 0.18 tolerated(0.18) possibly_damaging(0.489) TCGA-KU-A66S-01 7 100210379 100210379 G C MOSPD3 5'UTR 0.31 TCGA-KU-A66S-01 7 100304576 100304576 G A POP7 Missense_Mutation p.M41I 0.08 tolerated(0.12) benign(0.005) TCGA-KU-A66S-01 7 107880477 107880477 C A NRCAM Missense_Mutation p.R11L 0.37 tolerated(0.75) benign(0.011) TCGA-KU-A66S-01 7 11441499 11441499 G A THSD7A Missense_Mutation p.S1445F 0.15 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 7 121651351 121651351 C G PTPRZ1 Missense_Mutation p.P751A 0.10 tolerated_low_confidence(0.05) probably_damaging(0.997) TCGA-KU-A66S-01 7 126882899 126882899 C A GRM8 Silent p.V120V 0.39 TCGA-KU-A66S-01 7 129916556 129916556 G C CPA2 Missense_Mutation p.G225A 0.09 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 7 133502284 133502284 G T EXOC4 Missense_Mutation p.R574L 0.19 deleterious(0) probably_damaging(0.946) TCGA-KU-A66S-01 7 142460328 142460328 C - PRSS1 Frame_Shift_Del p.Q168Rfs*69 0.08 TCGA-KU-A66S-01 7 142481843 142481843 C G PRSS3P2 RNA 0.12 TCGA-KU-A66S-01 7 151860476 151860476 G C KMT2C Missense_Mutation p.Q3396E 0.21 probably_damaging(0.989) TCGA-KU-A66S-01 7 2987336 2987336 G C CARD11 Missense_Mutation p.H31Q 0.13 deleterious(0.03) probably_damaging(0.943) TCGA-KU-A66S-01 7 38389538 38389538 T A TRGV5 5'UTR 0.33 TCGA-KU-A66S-01 7 41729258 41729258 C A INHBA Missense_Mutation p.G424V 0.33 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 7 50121479 50121479 C G ZPBP Missense_Mutation p.M75I 0.20 deleterious(0.02) benign(0.05) TCGA-KU-A66S-01 7 53103708 53103708 C A POM121L12 Missense_Mutation p.A115D 0.40 tolerated(0.87) probably_damaging(0.958) TCGA-KU-A66S-01 7 57509997 57509997 G C ZNF716 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0.03) benign(0.077) TCGA-KU-A66S-01 7 62751977 62751977 C A ZNF733P RNA 0.11 TCGA-KU-A66S-01 7 66460573 66460573 T G SBDS 5'UTR 0.36 TCGA-KU-A66S-01 7 72040661 72040661 C T TYW1B Missense_Mutation p.R236H 0.14 deleterious(0.02) possibly_damaging(0.88) TCGA-KU-A66S-01 7 7571410 7571410 C A COL28A1 Missense_Mutation p.G84C 0.41 tolerated(0.11) possibly_damaging(0.894) TCGA-KU-A66S-01 7 83016326 83016326 G T SEMA3E Missense_Mutation p.Q570K 0.34 tolerated(0.54) probably_damaging(0.991) TCGA-KU-A66S-01 7 8791094 8791094 A T NXPH1 Missense_Mutation p.T171S 0.33 tolerated(1) benign(0.145) TCGA-KU-A66S-01 7 88956679 88956679 C A ZNF804B Silent p.R91R 0.26 TCGA-KU-A66S-01 7 89854364 89854364 G T STEAP2 Intron 0.35 TCGA-KU-A66S-01 7 95761098 95761098 C G SLC25A13 Silent p.G517G 0.07 TCGA-KU-A66S-01 7 99110205 99110205 G C ZKSCAN5 Missense_Mutation p.E182Q 0.13 tolerated(0.32) benign(0.247) TCGA-KU-A66S-01 7 99661734 99661734 G A ZSCAN21 Missense_Mutation p.V306M 0.39 tolerated(0.07) possibly_damaging(0.727) TCGA-KU-A66S-01 8 101299997 101299997 G C RNF19A Missense_Mutation p.L136V 0.17 deleterious(0.02) possibly_damaging(0.872) TCGA-KU-A66S-01 8 10465632 10465632 C G RP1L1 Missense_Mutation p.E1992D 0.05 unknown(0) TCGA-KU-A66S-01 8 108913365 108913365 G T RSPO2 Missense_Mutation p.L224M 0.20 tolerated(0.13) probably_damaging(0.997) TCGA-KU-A66S-01 8 110412557 110412557 G C PKHD1L1 Missense_Mutation p.G422A 0.05 tolerated(0.05) benign(0.422) TCGA-KU-A66S-01 8 110984547 110984547 C G KCNV1 Missense_Mutation p.V311L 0.23 deleterious(0.03) benign(0.139) TCGA-KU-A66S-01 8 113275901 113275901 C A CSMD3 Missense_Mutation p.G3277C 0.09 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 8 113293531 113293531 C T CSMD3 Missense_Mutation p.R3127Q 0.52 tolerated(0.29) benign(0.041) TCGA-KU-A66S-01 8 123964054 123964054 C G ZHX2 Missense_Mutation p.P102A 0.06 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 8 125989424 125989424 G C ZNF572 Missense_Mutation p.C305S 0.05 deleterious(0) probably_damaging(0.995) TCGA-KU-A66S-01 8 12956984 12956984 C A DLC1 Silent p.V954V 0.15 TCGA-KU-A66S-01 8 131792908 131792908 C A ADCY8 Nonsense_Mutation p.E1162* 0.06 TCGA-KU-A66S-01 8 133053934 133053934 G A OC90 Missense_Mutation p.P61L 0.52 deleterious(0.01) benign(0.156) TCGA-KU-A66S-01 8 145689747 145689747 C G CYHR1 Intron 0.55 TCGA-KU-A66S-01 8 19190590 19190590 C G SH2D4A Silent p.A102A 0.09 TCGA-KU-A66S-01 8 20004850 20004850 C G SLC18A1 Missense_Mutation p.M461I 0.09 tolerated(0.09) benign(0.344) TCGA-KU-A66S-01 8 22020624 22020624 C G SFTPC Missense_Mutation p.A78G 0.07 tolerated(0.65) benign(0.381) TCGA-KU-A66S-01 8 22267528 22267528 C G SLC39A14 Missense_Mutation p.P176R 0.07 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 8 3046419 3046419 G T CSMD1 Nonsense_Mutation p.S1838* 0.20 TCGA-KU-A66S-01 8 30657110 30657110 G C PPP2CB Missense_Mutation p.D88E 0.06 deleterious(0) probably_damaging(0.992) TCGA-KU-A66S-01 8 37611047 37611047 G T ERLIN2 Missense_Mutation p.K273N 0.64 deleterious(0.03) possibly_damaging(0.521) TCGA-KU-A66S-01 8 38146196 38146196 C G WHSC1L1 Missense_Mutation p.D1104H 0.07 deleterious(0) probably_damaging(0.98) TCGA-KU-A66S-01 8 39089556 39089556 T C ADAM32 Silent p.N512N 0.34 TCGA-KU-A66S-01 8 52321305 52321305 C G PXDNL Missense_Mutation p.R960P 0.29 deleterious(0) probably_damaging(0.998) TCGA-KU-A66S-01 8 62366709 62366709 C G CLVS1 Missense_Mutation p.P214A 0.04 deleterious(0.01) probably_damaging(0.973) TCGA-KU-A66S-01 8 6420344 6420344 G T ANGPT2 Missense_Mutation p.H38N 0.21 tolerated(0.17) benign(0.001) TCGA-KU-A66S-01 8 77767191 77767191 G C ZFHX4 Silent p.P2678P 0.06 TCGA-KU-A66S-01 8 8234217 8234217 G C SGK223 Missense_Mutation p.L568V 0.17 benign(0.079) TCGA-KU-A66S-01 8 82615267 82615267 C T ZFAND1 Silent p.K191K 0.67 TCGA-KU-A66S-01 8 86392937 86392937 T C CA2 Silent p.G234G 0.55 TCGA-KU-A66S-01 8 93004037 93004037 T A RUNX1T1 Missense_Mutation p.Q285L 0.29 tolerated(0.1) benign(0.101) TCGA-KU-A66S-01 8 95262646 95262646 G C GEM Missense_Mutation p.S261R 0.09 deleterious(0) probably_damaging(0.988) TCGA-KU-A66S-01 8 95523769 95523769 G C KIAA1429 Missense_Mutation p.L1012V 0.08 tolerated(0.08) probably_damaging(0.998) TCGA-KU-A66S-01 9 114131328 114131328 G C KIAA0368 Missense_Mutation p.N1878K 0.08 tolerated(0.18) benign(0.02) TCGA-KU-A66S-01 9 115932873 115932873 G T FKBP15 Silent p.R899R 0.44 TCGA-KU-A66S-01 9 117139491 117139491 C G AKNA Missense_Mutation p.R199T 0.14 deleterious(0.01) possibly_damaging(0.776) TCGA-KU-A66S-01 9 117826258 117826258 C G TNC Missense_Mutation p.E1193Q 0.12 deleterious(0.05) benign(0.084) TCGA-KU-A66S-01 9 119626005 119626005 C T ASTN2 Missense_Mutation p.A582T 0.18 tolerated(0.06) unknown(0) TCGA-KU-A66S-01 9 125330655 125330655 G C OR1L8 Missense_Mutation p.I34M 0.47 tolerated(0.22) possibly_damaging(0.494) TCGA-KU-A66S-01 9 125438164 125438164 T A OR1L3 Nonsense_Mutation p.Y252* 0.37 TCGA-KU-A66S-01 9 125622334 125622334 C G RC3H2 Missense_Mutation p.E571Q 0.05 tolerated(0.58) possibly_damaging(0.885) TCGA-KU-A66S-01 9 130493269 130493269 C G TTC16 Missense_Mutation p.T736S 0.15 tolerated(0.1) benign(0.076) TCGA-KU-A66S-01 9 131565604 131565604 C G TBC1D13 Missense_Mutation p.H207D 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-KU-A66S-01 9 131858334 131858334 G C CRAT Missense_Mutation p.D536E 0.08 tolerated(0.99) benign(0.001) TCGA-KU-A66S-01 9 134385675 134385675 G C POMT1 Missense_Mutation p.R265P 0.14 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 9 135919236 135919236 G A GTF3C5 Silent p.P165P 0.34 TCGA-KU-A66S-01 9 14120551 14120551 G C NFIB Missense_Mutation p.P378R 0.12 deleterious(0) possibly_damaging(0.743) TCGA-KU-A66S-01 9 18777032 18777032 C G ADAMTSL1 Missense_Mutation p.H935Q 0.18 tolerated(0.12) benign(0.129) TCGA-KU-A66S-01 9 37020631 37020631 A G PAX5 Splice_Site p.X71_splice 0.40 TCGA-KU-A66S-01 9 6013708 6013708 C G RANBP6 Missense_Mutation p.V634L 0.37 deleterious(0) probably_damaging(0.997) TCGA-KU-A66S-01 9 75520940 75520940 C G ALDH1A1 Missense_Mutation p.C456S 0.07 deleterious(0.02) probably_damaging(0.941) TCGA-KU-A66S-01 9 82187677 82187677 G A TLE4 5'UTR 0.12 TCGA-KU-A66S-01 9 8504347 8504347 C T PTPRD Missense_Mutation p.S579N 0.16 deleterious(0) benign(0.163) TCGA-KU-A66S-01 9 8528601 8528601 C A PTPRD Missense_Mutation p.Q177H 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-KU-A66S-01 9 91993742 91993742 G C SEMA4D Missense_Mutation p.I822M 0.13 tolerated_low_confidence(0.19) benign(0.005) TCGA-KU-A66S-01 9 95179154 95179154 A G OMD Silent p.P229P 0.43 TCGA-KU-A66S-01 X 100334069 100334069 C A TMEM35 Silent p.I26I 0.48 TCGA-KU-A66S-01 X 100608882 100608882 T A BTK Missense_Mutation p.S576C 0.36 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 X 100912204 100912204 C T ARMCX2 Missense_Mutation p.G124E 0.33 tolerated_low_confidence(0.24) benign(0.012) TCGA-KU-A66S-01 X 10109515 10109515 C G WWC3 Missense_Mutation p.P1085A 0.08 deleterious(0) possibly_damaging(0.894) TCGA-KU-A66S-01 X 105075044 105075044 C T NRK Intron 0.37 TCGA-KU-A66S-01 X 117033123 117033123 G T KLHL13 Silent p.A575A 0.17 TCGA-KU-A66S-01 X 118221721 118221721 C G KIAA1210 Missense_Mutation p.A1158P 0.41 tolerated(1) benign(0.001) TCGA-KU-A66S-01 X 119037571 119037571 A G AKAP14 Intron 0.24 TCGA-KU-A66S-01 X 119077437 119077437 C A NKAP Silent p.S44S 0.38 TCGA-KU-A66S-01 X 122538684 122538684 C A GRIA3 Silent p.S473S 0.36 TCGA-KU-A66S-01 X 123779070 123779070 G A TENM1 Missense_Mutation p.T600I 0.37 tolerated(0.18) benign(0.335) TCGA-KU-A66S-01 X 125298905 125298905 G C DCAF12L2 Missense_Mutation p.R335G 0.05 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 X 12904934 12904934 C G TLR7 Nonsense_Mutation p.S436* 0.40 TCGA-KU-A66S-01 X 129156925 129156925 C G BCORL1 Missense_Mutation p.L1221V 0.08 probably_damaging(0.996) TCGA-KU-A66S-01 X 129272623 129272623 C G AIFM1 Silent p.T304T 0.18 TCGA-KU-A66S-01 X 129480563 129480563 G A SLC25A14 Missense_Mutation p.G72D 0.51 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 X 130218248 130218248 C A ARHGAP36 Silent p.T205T 0.15 TCGA-KU-A66S-01 X 130411898 130411898 C T IGSF1 Missense_Mutation p.R756H 0.31 tolerated(0.16) benign(0.062) TCGA-KU-A66S-01 X 139040246 139040246 G A CXorf66 Silent p.S73S 0.40 TCGA-KU-A66S-01 X 140994721 140994721 C A MAGEC1 Missense_Mutation p.Q511K 0.31 deleterious_low_confidence(0) benign(0.042) TCGA-KU-A66S-01 X 144905889 144905889 G T SLITRK2 Missense_Mutation p.G649V 0.37 deleterious(0.02) probably_damaging(0.917) TCGA-KU-A66S-01 X 144906109 144906109 C A SLITRK2 Missense_Mutation p.N722K 0.29 tolerated(0.94) benign(0.001) TCGA-KU-A66S-01 X 148628622 148628622 G T CXorf40A 3'UTR 0.25 TCGA-KU-A66S-01 X 151821301 151821301 G T GABRQ Missense_Mutation p.V486F 0.04 deleterious(0) benign(0.131) TCGA-KU-A66S-01 X 153134304 153134304 A T L1CAM Missense_Mutation p.S457R 0.40 tolerated(0.31) benign(0.012) TCGA-KU-A66S-01 X 154528136 154528136 T C CLIC2 Silent p.K85K 0.49 TCGA-KU-A66S-01 X 155232562 155232562 C A IL9R Intron 0.37 TCGA-KU-A66S-01 X 15548116 15548116 C T BMX Missense_Mutation p.S302F 0.31 deleterious(0) probably_damaging(0.981) TCGA-KU-A66S-01 X 21886680 21886680 G C MBTPS2 Missense_Mutation p.V256L 0.03 deleterious(0.03) possibly_damaging(0.669) TCGA-KU-A66S-01 X 21985363 21985363 G T SMS Missense_Mutation p.Q33H 0.36 deleterious(0.05) benign(0.008) TCGA-KU-A66S-01 X 22291390 22291390 G C ZNF645 Silent p.P94P 0.11 TCGA-KU-A66S-01 X 23945485 23945485 C G CXorf58 Missense_Mutation p.Q185E 0.32 deleterious(0.02) probably_damaging(0.916) TCGA-KU-A66S-01 X 2408484 2408484 C T ZBED1 Missense_Mutation p.A93T 0.17 deleterious(0.01) probably_damaging(0.974) TCGA-KU-A66S-01 X 24665228 24665228 G T PCYT1B 5'UTR 0.37 TCGA-KU-A66S-01 X 24844670 24844670 T A POLA1 Missense_Mutation p.C1224S 0.38 deleterious(0) probably_damaging(0.967) TCGA-KU-A66S-01 X 29938093 29938093 G A IL1RAPL1 Silent p.Q313Q 0.37 TCGA-KU-A66S-01 X 30237576 30237576 C G MAGEB2 Silent p.A293A 0.06 TCGA-KU-A66S-01 X 30327211 30327211 C T NR0B1 Silent p.T90T 0.09 TCGA-KU-A66S-01 X 30872791 30872791 G A TAB3 Missense_Mutation p.H331Y 0.42 tolerated(1) benign(0.236) TCGA-KU-A66S-01 X 33146274 33146274 C T DMD Intron 0.36 TCGA-KU-A66S-01 X 34149858 34149858 C A FAM47A Missense_Mutation p.G180C 0.45 tolerated(0.34) probably_damaging(0.982) TCGA-KU-A66S-01 X 36162703 36162703 A G CHDC2 Missense_Mutation p.E429G 0.39 deleterious_low_confidence(0.01) benign(0.008) TCGA-KU-A66S-01 X 37545253 37545253 G C XK Silent p.L13L 0.46 TCGA-KU-A66S-01 X 39937183 39937183 G T BCOR 5'UTR 0.42 TCGA-KU-A66S-01 X 47487641 47487641 G T CFP Missense_Mutation p.P88H 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-KU-A66S-01 X 48924782 48924782 C A CCDC120 Missense_Mutation p.P343T 0.43 tolerated(0.26) benign(0.027) TCGA-KU-A66S-01 X 48935372 48935372 C A WDR45 Missense_Mutation p.E55D 0.28 deleterious(0.01) possibly_damaging(0.691) TCGA-KU-A66S-01 X 49022442 49022442 C G MAGIX Missense_Mutation p.P237A 0.05 tolerated(0.1) possibly_damaging(0.76) TCGA-KU-A66S-01 X 49083523 49083523 C A CACNA1F Missense_Mutation p.Q395H 0.26 deleterious(0) probably_damaging(0.992) TCGA-KU-A66S-01 X 50213567 50213567 C T DGKK RNA 0.19 TCGA-KU-A66S-01 X 53458383 53458383 C A HSD17B10 Missense_Mutation p.R252L 0.37 deleterious(0) probably_damaging(0.999) TCGA-KU-A66S-01 X 57935135 57935135 G T ZXDA Missense_Mutation p.L574I 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-KU-A66S-01 X 70281697 70281697 T C SNX12 Missense_Mutation p.N128D 0.43 deleterious(0.05) possibly_damaging(0.718) TCGA-KU-A66S-01 X 70837232 70837232 T C CXCR3 Silent p.G77G 0.27 TCGA-KU-A66S-01 X 7171343 7171343 G C STS Missense_Mutation p.G40R 0.14 deleterious(0) probably_damaging(1) TCGA-KU-A66S-01 X 71800902 71800902 C T PHKA1 Missense_Mutation p.A1208T 0.28 deleterious(0) benign(0.337) TCGA-KU-A66S-01 X 73061343 73061343 A T XIST RNA 0.31 TCGA-KU-A66S-01 X 79698352 79698352 T C FAM46D Missense_Mutation p.L105P 0.36 deleterious(0) probably_damaging(0.996) TCGA-KU-A66S-01 X 80374256 80374256 T C HMGN5 Silent p.P16P 0.29 TCGA-KU-A66S-01 X 84520163 84520163 G T ZNF711 Missense_Mutation p.G273V 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-KU-A66S-01 X 86919875 86919875 C A KLHL4 Missense_Mutation p.D679E 0.26 deleterious(0) possibly_damaging(0.799) TCGA-KU-A66T-01 10 103607343 103607343 A G C10orf76 Missense_Mutation p.L671P 0.15 deleterious(0.01) possibly_damaging(0.748) TCGA-KU-A66T-01 10 17087129 17087129 C A CUBN Missense_Mutation p.M1183I 0.29 deleterious(0.02) possibly_damaging(0.824) TCGA-KU-A66T-01 10 17110638 17110638 A C CUBN Missense_Mutation p.H919Q 0.25 tolerated(0.25) possibly_damaging(0.616) TCGA-KU-A66T-01 10 43292587 43292587 A G BMS1 Missense_Mutation p.Q632R 0.42 tolerated(0.39) benign(0) TCGA-KU-A66T-01 10 89268241 89268241 A T MINPP1 Missense_Mutation p.L262F 0.34 tolerated(0.26) possibly_damaging(0.739) TCGA-KU-A66T-01 11 3838738 3838738 T G PGAP2 Missense_Mutation p.F107L 0.45 deleterious(0.04) probably_damaging(0.95) TCGA-KU-A66T-01 11 47282095 47282095 G A NR1H3 Missense_Mutation p.R123H 0.38 deleterious(0) probably_damaging(1) TCGA-KU-A66T-01 11 56114039 56114039 T G OR8K1 Missense_Mutation p.C175W 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.822) TCGA-KU-A66T-01 11 60269505 60269505 G A MS4A12 Missense_Mutation p.R155H 0.45 tolerated(0.09) benign(0.008) TCGA-KU-A66T-01 11 62455427 62455427 C T LRRN4CL Missense_Mutation p.R185H 0.45 tolerated(0.09) possibly_damaging(0.828) TCGA-KU-A66T-01 11 69514295 69514295 T A FGF19 Missense_Mutation p.D129V 0.03 tolerated(0.1) possibly_damaging(0.492) TCGA-KU-A66T-01 11 69934124 69934124 C G ANO1 Silent p.R125R 0.09 TCGA-KU-A66T-01 11 73803466 73803466 G C C2CD3 Nonsense_Mutation p.S1171* 0.06 TCGA-KU-A66T-01 11 76804775 76804775 C T CAPN5 Silent p.H71H 0.55 TCGA-KU-A66T-01 12 120759996 120759996 T G PLA2G1B Nonstop_Mutation p.*149Cext*20 0.27 TCGA-KU-A66T-01 12 15095593 15095593 T C ARHGDIB Missense_Mutation p.T157A 0.04 deleterious(0.05) benign(0.249) TCGA-KU-A66T-01 12 20833083 20833083 C A PDE3A Missense_Mutation p.Q1102K 0.13 tolerated(0.44) benign(0.001) TCGA-KU-A66T-01 12 21628612 21628612 G A RECQL Nonsense_Mutation p.Q366* 0.43 TCGA-KU-A66T-01 12 51467832 51467832 C T CSRNP2 Missense_Mutation p.R62Q 0.27 deleterious(0.04) probably_damaging(0.927) TCGA-KU-A66T-01 13 28636117 28636117 T A FLT3 Silent p.V85V 0.87 TCGA-KU-A66T-01 14 106845433 106845433 C A IGHV3-35 Missense_Mutation p.D81Y 0.11 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-KU-A66T-01 14 19553563 19553563 C T POTEG Silent p.H49H 0.18 TCGA-KU-A66T-01 14 22265581 22265581 C T TRAV8-1 5'UTR 0.11 TCGA-KU-A66T-01 14 37132259 37132266 CAAGATCC - PAX9 Frame_Shift_Del p.K55Gfs*259 0.19 TCGA-KU-A66T-01 15 22997855 22997855 G A CYFIP1 Missense_Mutation p.R1034Q 0.44 tolerated(0.17) possibly_damaging(0.708) TCGA-KU-A66T-01 15 28502312 28502312 G C HERC2 Silent p.L804L 0.49 TCGA-KU-A66T-01 15 28771448 28771448 C T GOLGA8G Missense_Mutation p.E375K 0.48 tolerated(0.15) benign(0.018) TCGA-KU-A66T-01 15 38234587 38234587 G A TMCO5A Intron 0.42 TCGA-KU-A66T-01 15 63637739 63637739 C G CA12 Missense_Mutation p.W122C 0.08 deleterious(0) probably_damaging(1) TCGA-KU-A66T-01 15 65410981 65410981 C A PDCD7 3'UTR 0.41 TCGA-KU-A66T-01 15 89074648 89074648 G T DET1 Missense_Mutation p.L108M 0.46 deleterious(0.01) probably_damaging(0.954) TCGA-KU-A66T-01 16 11969699 11969699 G A GSPT1 Missense_Mutation p.R594C 0.29 deleterious(0.02) benign(0.198) TCGA-KU-A66T-01 16 2233699 2233699 G A CASKIN1 Missense_Mutation p.A526V 0.27 benign(0.093) TCGA-KU-A66T-01 16 29998209 29998209 G C TAOK2 Missense_Mutation p.L872F 0.33 deleterious_low_confidence(0) benign(0.1) TCGA-KU-A66T-01 16 53922747 53922747 G C FTO Missense_Mutation p.E375Q 0.25 deleterious(0.02) possibly_damaging(0.525) TCGA-KU-A66T-01 16 56536340 56536340 C T BBS2 Silent p.E323E 0.27 TCGA-KU-A66T-01 16 56875706 56875706 G A NUP93 Silent p.S770S 0.31 TCGA-KU-A66T-01 16 56977323 56977323 G A HERPUD1 3'UTR 0.31 TCGA-KU-A66T-01 16 70995928 70995928 C T HYDIN Missense_Mutation p.V1968I 0.11 benign(0.001) TCGA-KU-A66T-01 17 18167697 18167697 C T MIEF2 Silent p.N339N 0.21 TCGA-KU-A66T-01 17 27085727 27085727 G A FAM222B Missense_Mutation p.A417V 0.17 tolerated(0.05) benign(0.124) TCGA-KU-A66T-01 17 35297710 35297710 C T LHX1 Silent p.L98L 0.32 TCGA-KU-A66T-01 17 59878828 59878828 G T BRIP1 Missense_Mutation p.S309Y 0.20 deleterious(0) probably_damaging(0.966) TCGA-KU-A66T-01 17 62582206 62582206 G A SMURF2 Silent p.D161D 0.16 TCGA-KU-A66T-01 17 65344755 65344755 C T PSMD12 Missense_Mutation p.E141K 0.13 deleterious(0) probably_damaging(0.991) TCGA-KU-A66T-01 17 72850931 72850931 T A GRIN2C Missense_Mutation p.T101S 0.14 tolerated(0.33) benign(0.401) TCGA-KU-A66T-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.94 deleterious(0) probably_damaging(0.999) TCGA-KU-A66T-01 17 8172074 8172074 C T PFAS Silent p.Y1202Y 0.34 TCGA-KU-A66T-01 17 9515647 9515647 C A WDR16 Silent p.G292G 0.07 TCGA-KU-A66T-01 18 5415870 5415870 C A EPB41L3 Missense_Mutation p.A672S 0.21 tolerated(0.19) benign(0.217) TCGA-KU-A66T-01 18 8387166 8387166 A G PTPRM Missense_Mutation p.I1381V 0.60 tolerated(0.68) benign(0.003) TCGA-KU-A66T-01 19 10405162 10405162 C T ICAM5 Silent p.A692A 0.12 TCGA-KU-A66T-01 19 12984818 12984818 C A MAST1 Missense_Mutation p.R1283S 0.76 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-KU-A66T-01 19 15789115 15789115 G A CYP4F12 Silent p.S81S 0.23 TCGA-KU-A66T-01 19 18241317 18241317 G C MAST3 Missense_Mutation p.V384L 0.14 deleterious(0) possibly_damaging(0.759) TCGA-KU-A66T-01 19 33113426 33113426 A G ANKRD27 Missense_Mutation p.Y577H 0.05 deleterious(0.01) possibly_damaging(0.727) TCGA-KU-A66T-01 19 41025959 41025959 C G SPTBN4 Silent p.L1185L 0.16 TCGA-KU-A66T-01 19 41249885 41249885 T C C19orf54 Intron 0.05 TCGA-KU-A66T-01 19 425196 425196 G A SHC2 Missense_Mutation p.R404W 0.31 deleterious(0.04) possibly_damaging(0.881) TCGA-KU-A66T-01 19 42824573 42824573 C G TMEM145 Missense_Mutation p.A393G 0.21 tolerated(0.48) benign(0.025) TCGA-KU-A66T-01 19 4363716 4363716 C A SH3GL1 Splice_Site p.X208_splice 0.19 TCGA-KU-A66T-01 19 49952900 49952900 T A PIH1D1 Nonsense_Mutation p.K57* 0.10 TCGA-KU-A66T-01 19 56041199 56041199 G A SBK2 Silent p.S316S 0.23 TCGA-KU-A66T-01 19 57175946 57175946 C T ZNF835 Silent p.T207T 0.19 TCGA-KU-A66T-01 19 58596526 58596526 G A ZSCAN18 Silent p.S409S 0.34 TCGA-KU-A66T-01 19 58596701 58596701 G A ZSCAN18 Missense_Mutation p.A351V 0.15 tolerated(0.53) benign(0.001) TCGA-KU-A66T-01 1 12091991 12091991 G T MIIP 3'UTR 0.50 TCGA-KU-A66T-01 1 162769622 162769622 C G HSD17B7 Missense_Mutation p.F179L 0.07 tolerated(0.11) possibly_damaging(0.572) TCGA-KU-A66T-01 1 171086408 171086408 C T FMO3 Silent p.G475G 0.28 TCGA-KU-A66T-01 1 201915474 201915474 C A LMOD1 5'UTR 0.12 TCGA-KU-A66T-01 1 33237579 33237579 G A KIAA1522 Silent p.A933A 0.57 TCGA-KU-A66T-01 1 3425651 3425651 T C MEGF6 Missense_Mutation p.T506A 0.39 tolerated(0.89) benign(0.002) TCGA-KU-A66T-01 1 40027384 40027384 C T PABPC4 Missense_Mutation p.A657T 0.19 tolerated_low_confidence(0.47) unknown(0) TCGA-KU-A66T-01 1 89448845 89448845 C A RBMXL1 Missense_Mutation p.S222I 0.07 deleterious(0.05) benign(0.168) TCGA-KU-A66T-01 1 9783218 9783218 G A PIK3CD Missense_Mutation p.R821H 0.11 tolerated(0.09) benign(0.009) TCGA-KU-A66T-01 22 16287550 16287550 G A POTEH Silent p.S112S 0.37 TCGA-KU-A66T-01 22 17586805 17586805 G A IL17RA Missense_Mutation p.V336I 0.63 tolerated(0.17) benign(0.029) TCGA-KU-A66T-01 22 39378468 39378468 C G APOBEC3B Missense_Mutation p.Q4E 0.53 deleterious(0.02) benign(0.007) TCGA-KU-A66T-01 2 118766157 118766157 G T CCDC93 Missense_Mutation p.F40L 0.26 deleterious(0) probably_damaging(0.996) TCGA-KU-A66T-01 2 135107509 135107509 C T MGAT5 Missense_Mutation p.P416S 0.51 deleterious(0) probably_damaging(0.997) TCGA-KU-A66T-01 2 26706498 26706498 C T OTOF Silent p.E408E 0.32 TCGA-KU-A66T-01 2 3727534 3727534 C G ALLC Missense_Mutation p.T83R 0.27 deleterious(0) possibly_damaging(0.866) TCGA-KU-A66T-01 2 62728240 62728240 C A TMEM17 3'UTR 0.21 TCGA-KU-A66T-01 2 97365284 97365284 T A FER1L5 Intron 0.11 TCGA-KU-A66T-01 3 15287140 15287140 C T CAPN7 Nonsense_Mutation p.Q658* 0.42 TCGA-KU-A66T-01 3 155199041 155199041 T G PLCH1 Missense_Mutation p.N1600H 0.05 tolerated_low_confidence(0.07) benign(0.008) TCGA-KU-A66T-01 3 168833976 168833976 C T MECOM Missense_Mutation p.E439K 0.12 tolerated(0.05) benign(0.388) TCGA-KU-A66T-01 3 171330139 171330139 G C PLD1 Missense_Mutation p.P938A 0.14 tolerated(0.28) benign(0.078) TCGA-KU-A66T-01 3 183896750 183896750 G A AP2M1 Silent p.R60R 0.37 TCGA-KU-A66T-01 3 440041 440041 C T CHL1 Nonsense_Mutation p.Q1076* 0.22 TCGA-KU-A66T-01 3 44491028 44491028 C G ZNF445 Missense_Mutation p.G303A 0.42 tolerated(0.73) possibly_damaging(0.794) TCGA-KU-A66T-01 4 104115399 104115399 T G CENPE Missense_Mutation p.K227T 0.17 probably_damaging(1) TCGA-KU-A66T-01 4 110862242 110862242 T G EGF Missense_Mutation p.W90G 0.35 deleterious(0) probably_damaging(1) TCGA-KU-A66T-01 4 145032560 145032560 G T GYPA Missense_Mutation p.T147K 0.14 tolerated_low_confidence(0.63) benign(0.009) TCGA-KU-A66T-01 4 170057513 170057513 G A SH3RF1 Missense_Mutation p.R342W 0.26 deleterious(0) probably_damaging(0.998) TCGA-KU-A66T-01 4 39482732 39482732 G A LIAS 3'Flank 0.22 TCGA-KU-A66T-01 5 115783370 115783370 G A SEMA6A Missense_Mutation p.R678C 0.43 tolerated(0.11) probably_damaging(0.999) TCGA-KU-A66T-01 5 132149779 132149779 C T SOWAHA Missense_Mutation p.P156S 0.50 tolerated(0.69) benign(0) TCGA-KU-A66T-01 5 148754117 148754117 G A IL17B Missense_Mutation p.R120W 0.38 deleterious(0) possibly_damaging(0.908) TCGA-KU-A66T-01 5 3599946 3599946 G T IRX1 Missense_Mutation p.R295L 0.33 deleterious(0.03) probably_damaging(0.931) TCGA-KU-A66T-01 5 71756557 71756557 G T ZNF366 Missense_Mutation p.P256H 0.16 tolerated(0.05) probably_damaging(0.995) TCGA-KU-A66T-01 5 98235320 98235320 G C CHD1 Missense_Mutation p.Q317E 0.19 deleterious(0) benign(0.202) TCGA-KU-A66T-01 6 102307270 102307270 T A GRIK2 Missense_Mutation p.F476I 0.19 deleterious(0) probably_damaging(0.999) TCGA-KU-A66T-01 6 152552687 152552687 T C SYNE1 Missense_Mutation p.I6960V 0.22 benign(0.002) TCGA-KU-A66T-01 6 29323066 29323066 T A OR5V1 Missense_Mutation p.T303S 0.04 tolerated(0.09) benign(0.005) TCGA-KU-A66T-01 6 31677815 31677815 C T LY6G6F Missense_Mutation p.A220V 0.25 tolerated(0.1) benign(0.001) TCGA-KU-A66T-01 6 31917333 31917333 C T CFB Silent p.I971I 0.22 TCGA-KU-A66T-01 6 34506142 34506142 C A SPDEF Missense_Mutation p.S306I 0.16 deleterious(0) probably_damaging(0.999) TCGA-KU-A66T-01 6 76425346 76425346 C G SENP6 3'UTR 0.20 TCGA-KU-A66T-01 6 83855308 83855308 G T DOPEY1 Missense_Mutation p.M1869I 0.09 deleterious(0.01) benign(0.263) TCGA-KU-A66T-01 6 96651501 96651501 C G FUT9 Missense_Mutation p.T157S 0.58 tolerated(0.71) benign(0.07) TCGA-KU-A66T-01 7 100084786 100084786 G A NYAP1 Silent p.T137T 0.30 TCGA-KU-A66T-01 7 112095887 112095887 G T IFRD1 Missense_Mutation p.S55I 0.06 deleterious(0) probably_damaging(0.996) TCGA-KU-A66T-01 7 16815972 16815972 C T TSPAN13 Missense_Mutation p.A67V 0.25 deleterious(0) probably_damaging(0.936) TCGA-KU-A66T-01 7 20785014 20785014 G A ABCB5 Missense_Mutation p.A1128T 0.27 deleterious(0) possibly_damaging(0.691) TCGA-KU-A66T-01 7 4917400 4917400 T A RADIL Missense_Mutation p.Q124L 0.09 tolerated(0.05) benign(0.158) TCGA-KU-A66T-01 7 55240688 55240688 G C EGFR Silent p.P644P 0.04 TCGA-KU-A66T-01 7 55990881 55990881 C T MRPS17 Silent p.A25A 0.30 TCGA-KU-A66T-01 7 72849831 72849831 G A FZD9 Silent p.S498S 0.41 TCGA-KU-A66T-01 7 87190586 87190586 G T ABCB1 Missense_Mutation p.L274I 0.32 tolerated(1) benign(0.012) TCGA-KU-A66T-01 7 91936800 91936800 C T ANKIB1 Missense_Mutation p.P106S 0.15 tolerated(0.13) benign(0.016) TCGA-KU-A66T-01 7 97823049 97823049 C T LMTK2 Missense_Mutation p.T1091M 0.32 deleterious(0.05) possibly_damaging(0.879) TCGA-KU-A66T-01 8 132051855 132051855 A C ADCY8 Missense_Mutation p.L242R 0.08 deleterious(0) probably_damaging(0.99) TCGA-KU-A66T-01 8 144994473 144994473 C T PLEC Silent p.S3309S 0.22 TCGA-KU-A66T-01 8 42828466 42828466 C T HOOK3 Missense_Mutation p.S386L 0.73 deleterious(0) benign(0.234) TCGA-KU-A66T-01 9 112705561 112705561 G T PALM2 Silent p.G364G 0.21 TCGA-KU-A66T-01 9 115805121 115805121 G A ZFP37 Nonsense_Mutation p.R593* 0.40 TCGA-KU-A66T-01 9 74863239 74863239 C T GDA Missense_Mutation p.P449L 0.40 deleterious(0.01) probably_damaging(0.979) TCGA-KU-A66T-01 9 991057 991057 C T DMRT3 3'UTR 0.25 TCGA-KU-A66T-01 X 101139591 101139591 G C ZMAT1 Missense_Mutation p.Q270E 0.08 deleterious(0.03) benign(0.014) TCGA-KU-A66T-01 X 102931680 102931680 G A MORF4L2 Silent p.S92S 0.15 TCGA-KU-A66T-01 X 130220641 130220641 T A ARHGAP36 Splice_Site p.X496_splice 0.27 TCGA-KU-A66T-01 X 140271120 140271120 C T LDOC1 Silent p.Q29Q 0.61 TCGA-KU-A66T-01 X 152018844 152018844 C T NSDHL Silent p.F48F 0.29 TCGA-KU-A66T-01 X 152959013 152959013 C T SLC6A8 Silent p.G371G 0.36 TCGA-KU-A66T-01 X 153592635 153592635 G A FLNA Nonsense_Mutation p.Q710* 0.23 TCGA-KU-A66T-01 X 153880851 153880851 G C CTAG2 Missense_Mutation p.I108M 0.27 tolerated_low_confidence(0.08) possibly_damaging(0.764) TCGA-KU-A66T-01 X 80001091 80001091 G A BRWD3 Nonsense_Mutation p.R190* 0.51 TCGA-KU-A66T-01 X 92928364 92928364 T G NAP1L3 5'UTR 0.19 TCGA-KU-A6H7-01 10 101604094 101604094 G A ABCC2 Missense_Mutation p.D1287N 0.32 tolerated(0.18) benign(0.347) TCGA-KU-A6H7-01 10 101648654 101648654 C T DNMBP Silent p.E1071E 0.22 TCGA-KU-A6H7-01 10 105452908 105452908 G T SH3PXD2A Intron 0.29 TCGA-KU-A6H7-01 10 21117520 21117520 G C NEBL Missense_Mutation p.S572C 0.24 deleterious(0.02) benign(0.178) TCGA-KU-A6H7-01 10 46122283 46122283 G C ZFAND4 Missense_Mutation p.H330D 0.09 tolerated(0.1) benign(0.135) TCGA-KU-A6H7-01 10 90768732 90768732 G - FAS Frame_Shift_Del p.E141Nfs*46 0.22 TCGA-KU-A6H7-01 11 123811134 123811134 G A OR4D5 Missense_Mutation p.V271I 0.17 tolerated(0.33) benign(0.01) TCGA-KU-A6H7-01 11 123811260 123811260 G A OR4D5 Missense_Mutation p.E313K 0.04 tolerated(0.15) benign(0.001) TCGA-KU-A6H7-01 11 134128475 134128475 C T ACAD8 Silent p.L149L 0.24 TCGA-KU-A6H7-01 11 14278223 14278223 G A SPON1 RNA 0.23 TCGA-KU-A6H7-01 11 18637573 18637573 C T SPTY2D1 Missense_Mutation p.R83K 0.09 deleterious(0.02) benign(0.067) TCGA-KU-A6H7-01 11 4407008 4407008 C G TRIM21 Missense_Mutation p.G312A 0.20 tolerated(0.43) benign(0.3) TCGA-KU-A6H7-01 11 48238859 48238859 C T OR4B1 Silent p.F166F 0.20 TCGA-KU-A6H7-01 11 68153966 68153966 G A LRP5 Missense_Mutation p.A400T 0.21 deleterious(0.02) possibly_damaging(0.461) TCGA-KU-A6H7-01 11 88045588 88045588 G A CTSC Silent p.V151V 0.22 TCGA-KU-A6H7-01 12 108128117 108128117 G T PRDM4 Nonsense_Mutation p.S759* 0.17 TCGA-KU-A6H7-01 12 119617124 119617124 G A HSPB8 Missense_Mutation p.D3N 0.05 deleterious(0) possibly_damaging(0.862) TCGA-KU-A6H7-01 12 122287590 122287590 C G HPD Intron 0.30 TCGA-KU-A6H7-01 12 26493139 26493139 G C ITPR2 Silent p.V2660V 0.21 TCGA-KU-A6H7-01 12 26493171 26493171 G A ITPR2 Nonsense_Mutation p.Q2650* 0.15 TCGA-KU-A6H7-01 12 26493217 26493217 G A ITPR2 Silent p.L2634L 0.10 TCGA-KU-A6H7-01 12 40704287 40704287 G A LRRK2 Missense_Mutation p.D1458N 0.24 tolerated(0.13) benign(0.023) TCGA-KU-A6H7-01 12 50030561 50030561 G C PRPF40B Missense_Mutation p.E497Q 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-KU-A6H7-01 12 58114780 58114780 G A OS9 3'UTR 0.38 TCGA-KU-A6H7-01 12 76424831 76424831 C T PHLDA1 Missense_Mutation p.E231K 0.08 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-KU-A6H7-01 12 85434298 85434298 C T LRRIQ1 Missense_Mutation p.H55Y 0.12 tolerated(0.28) benign(0.037) TCGA-KU-A6H7-01 12 93226487 93226487 C G EEA1 Missense_Mutation p.R352T 0.09 deleterious(0.02) possibly_damaging(0.786) TCGA-KU-A6H7-01 13 21295937 21295937 C T IL17D Silent p.G151G 0.14 TCGA-KU-A6H7-01 13 48936983 48936983 C T RB1 Nonsense_Mutation p.R251* 0.34 TCGA-KU-A6H7-01 13 99037976 99037976 G T FARP1 Nonsense_Mutation p.E223* 0.17 TCGA-KU-A6H7-01 14 22102114 22102114 C T OR10G2 Silent p.L295L 0.06 TCGA-KU-A6H7-01 14 24789008 24789008 G T ADCY4 Silent p.I891I 0.12 TCGA-KU-A6H7-01 14 24789035 24789035 G A ADCY4 Silent p.F882F 0.12 TCGA-KU-A6H7-01 14 24789048 24789048 G A ADCY4 Missense_Mutation p.S878L 0.11 deleterious(0) probably_damaging(1) TCGA-KU-A6H7-01 14 58790207 58790207 G A ARID4A Missense_Mutation p.E152K 0.24 deleterious(0.01) probably_damaging(0.93) TCGA-KU-A6H7-01 14 70855193 70855193 G T SYNJ2BP Silent p.I65I 0.21 TCGA-KU-A6H7-01 14 75748023 75748023 G A FOS Missense_Mutation p.E347K 0.20 deleterious(0) probably_damaging(0.949) TCGA-KU-A6H7-01 14 76187031 76187031 C T TTLL5 Missense_Mutation p.R343C 0.24 deleterious(0) probably_damaging(0.994) TCGA-KU-A6H7-01 14 77948830 77948830 C T ISM2 Missense_Mutation p.E270K 0.25 tolerated(0.11) possibly_damaging(0.636) TCGA-KU-A6H7-01 14 95088735 95088735 C T SERPINA3 Silent p.N325N 0.09 TCGA-KU-A6H7-01 14 95999834 95999834 C T GLRX5 5'Flank 0.06 TCGA-KU-A6H7-01 15 42373213 42373213 C T PLA2G4D Missense_Mutation p.G359D 0.23 deleterious(0) probably_damaging(1) TCGA-KU-A6H7-01 15 59192011 59192011 C T SLTM Missense_Mutation p.E239K 0.18 deleterious(0.03) unknown(0) TCGA-KU-A6H7-01 15 63125668 63125668 G A TLN2 Intron 0.04 TCGA-KU-A6H7-01 15 75668003 75668003 C T SIN3A Intron 0.24 TCGA-KU-A6H7-01 16 1246017 1246017 G A CACNA1H Missense_Mutation p.V213M 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-KU-A6H7-01 16 29818686 29818686 C G MAZ Missense_Mutation p.L194V 0.35 tolerated(0.3) possibly_damaging(0.801) TCGA-KU-A6H7-01 16 53358331 53358331 G A CHD9 Missense_Mutation p.E2724K 0.26 unknown(0) TCGA-KU-A6H7-01 16 57111636 57111636 C T NLRC5 Missense_Mutation p.S1642L 0.29 deleterious(0) possibly_damaging(0.887) TCGA-KU-A6H7-01 16 65022083 65022083 C G CDH11 Missense_Mutation p.E326Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-KU-A6H7-01 16 72139145 72139145 G C DHX38 Missense_Mutation p.Q759H 0.31 deleterious(0.04) possibly_damaging(0.492) TCGA-KU-A6H7-01 17 18635351 18635351 G C TRIM16L Splice_Site p.X123_splice 0.20 TCGA-KU-A6H7-01 17 26114709 26114709 G A NOS2 Silent p.F154F 0.06 TCGA-KU-A6H7-01 17 29185216 29185216 G C ATAD5 Missense_Mutation p.R944T 0.07 deleterious(0) probably_damaging(0.964) TCGA-KU-A6H7-01 17 3494382 3494382 C T SHPK Silent p.L160L 0.23 TCGA-KU-A6H7-01 17 39739591 39739591 C T KRT14 Silent p.E390E 0.17 TCGA-KU-A6H7-01 17 39739910 39739910 C T KRT14 Missense_Mutation p.E316K 0.12 deleterious(0.01) possibly_damaging(0.746) TCGA-KU-A6H7-01 17 39740126 39740126 C T KRT14 Silent p.E271E 0.13 TCGA-KU-A6H7-01 17 39740128 39740128 C T KRT14 Missense_Mutation p.E271K 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-KU-A6H7-01 17 41738457 41738457 G C MEOX1 Missense_Mutation p.S149C 0.03 tolerated(0.05) benign(0.015) TCGA-KU-A6H7-01 17 4858564 4858564 C T ENO3 Silent p.F213F 0.22 TCGA-KU-A6H7-01 17 72338069 72338069 C T KIF19 Missense_Mutation p.R59C 0.13 deleterious(0) probably_damaging(0.997) TCGA-KU-A6H7-01 17 73273537 73273537 C T SLC25A19 Missense_Mutation p.S224N 0.32 deleterious(0.01) possibly_damaging(0.756) TCGA-KU-A6H7-01 17 80790229 80790229 G T ZNF750 Nonsense_Mutation p.C34* 0.44 TCGA-KU-A6H7-01 17 8272706 8272706 C G KRBA2 Missense_Mutation p.E409Q 0.18 deleterious(0.04) possibly_damaging(0.539) TCGA-KU-A6H7-01 18 21461945 21461945 G A LAMA3 Missense_Mutation p.E1720K 0.21 possibly_damaging(0.672) TCGA-KU-A6H7-01 18 32887764 32887764 G C ZNF271 RNA 0.11 TCGA-KU-A6H7-01 18 5395094 5395094 G A EPB41L3 Missense_Mutation p.T1042M 0.05 deleterious(0) probably_damaging(1) TCGA-KU-A6H7-01 18 67813011 67813011 G A RTTN Missense_Mutation p.S773L 0.17 tolerated(0.1) benign(0.3) TCGA-KU-A6H7-01 18 67991962 67991962 G C SOCS6 Missense_Mutation p.E20Q 0.12 deleterious_low_confidence(0) benign(0.415) TCGA-KU-A6H7-01 18 67992019 67992019 G C SOCS6 Missense_Mutation p.D39H 0.14 deleterious_low_confidence(0) possibly_damaging(0.535) TCGA-KU-A6H7-01 18 67992094 67992094 G - SOCS6 Frame_Shift_Del p.G64Efs*10 0.17 TCGA-KU-A6H7-01 18 67992151 67992151 G T SOCS6 Missense_Mutation p.A83S 0.15 tolerated_low_confidence(0.06) benign(0.016) TCGA-KU-A6H7-01 18 67992445 67992445 G C SOCS6 Missense_Mutation p.E181Q 0.25 deleterious_low_confidence(0.02) benign(0.058) TCGA-KU-A6H7-01 18 67993164 67993164 G A SOCS6 Silent p.L420L 0.18 TCGA-KU-A6H7-01 18 67993562 67993562 G C SOCS6 3'UTR 0.18 TCGA-KU-A6H7-01 18 8828905 8828905 G A SOGA2 Splice_Site p.X1575_splice 0.18 TCGA-KU-A6H7-01 19 3578065 3578065 G A HMG20B Missense_Mutation p.E299K 0.15 tolerated(0.06) benign(0.389) TCGA-KU-A6H7-01 19 39883109 39883109 G C MED29 Missense_Mutation p.L95F 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-KU-A6H7-01 19 40521147 40521147 G C ZNF546 Missense_Mutation p.R657T 0.09 deleterious(0.02) possibly_damaging(0.749) TCGA-KU-A6H7-01 19 41931603 41931603 C T B3GNT8 Missense_Mutation p.D361N 0.18 deleterious(0.03) benign(0.058) TCGA-KU-A6H7-01 19 42794548 42794548 C T CIC Missense_Mutation p.S543L 0.24 possibly_damaging(0.879) TCGA-KU-A6H7-01 19 47204144 47204144 C G PRKD2 Missense_Mutation p.E345Q 0.16 tolerated(0.12) benign(0.073) TCGA-KU-A6H7-01 19 47425031 47425031 G A ARHGAP35 Silent p.L1033L 0.16 TCGA-KU-A6H7-01 19 58084885 58084885 C G ZNF416 Missense_Mutation p.L129F 0.10 tolerated(0.68) benign(0.028) TCGA-KU-A6H7-01 1 144879256 144879256 C T PDE4DIP Silent p.L1398L 0.09 TCGA-KU-A6H7-01 1 150940946 150940946 C T CERS2 Silent p.E72E 0.08 TCGA-KU-A6H7-01 1 150997133 150997133 C G PRUNE Missense_Mutation p.R128G 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-KU-A6H7-01 1 153634912 153634912 G C ILF2 Missense_Mutation p.P378R 0.41 tolerated_low_confidence(0.17) unknown(0) TCGA-KU-A6H7-01 1 161480678 161480678 C T FCGR2A Missense_Mutation p.A225V 0.29 tolerated(0.46) benign(0.002) TCGA-KU-A6H7-01 1 165697253 165697253 C G TMCO1 3'UTR 0.17 TCGA-KU-A6H7-01 1 183083794 183083794 G C LAMC1 Missense_Mutation p.E384Q 0.05 tolerated(0.45) possibly_damaging(0.826) TCGA-KU-A6H7-01 1 197398707 197398707 C T CRB1 Silent p.H935H 0.38 TCGA-KU-A6H7-01 1 208224401 208224401 G C PLXNA2 Missense_Mutation p.Q1070E 0.16 deleterious(0.01) possibly_damaging(0.894) TCGA-KU-A6H7-01 1 210267850 210267850 G A SYT14 Missense_Mutation p.G254E 0.06 tolerated(0.07) benign(0.118) TCGA-KU-A6H7-01 1 222802495 222802495 G A MIA3 Missense_Mutation p.E645K 0.06 tolerated(0.26) benign(0.002) TCGA-KU-A6H7-01 1 231557041 231557041 G A EGLN1 Silent p.I198I 0.35 TCGA-KU-A6H7-01 1 23645146 23645146 C T HNRNPR Missense_Mutation p.D286N 0.23 tolerated(0.09) possibly_damaging(0.8) TCGA-KU-A6H7-01 1 248128891 248128891 C T OR2AK2 Silent p.L86L 0.05 TCGA-KU-A6H7-01 1 27224089 27224089 C T GPATCH3 Silent p.G193G 0.19 TCGA-KU-A6H7-01 1 31838696 31838696 G A FABP3 3'UTR 0.19 TCGA-KU-A6H7-01 1 36306771 36306771 C T AGO4 Missense_Mutation p.S577L 0.19 tolerated(0.42) benign(0.009) TCGA-KU-A6H7-01 1 3712433 3712433 G A LRRC47 Missense_Mutation p.S203L 0.50 deleterious(0.04) benign(0.354) TCGA-KU-A6H7-01 1 41285102 41285102 C G KCNQ4 Missense_Mutation p.N264K 0.20 tolerated(0.11) probably_damaging(0.941) TCGA-KU-A6H7-01 1 52260496 52260496 C T NRD1 Missense_Mutation p.D947N 0.17 tolerated(0.19) benign(0.065) TCGA-KU-A6H7-01 1 56962220 56962220 C T PPAP2B 3'UTR 0.25 TCGA-KU-A6H7-01 1 67885715 67885715 G C SERBP1 Missense_Mutation p.L325V 0.14 deleterious(0.01) probably_damaging(0.94) TCGA-KU-A6H7-01 1 90399323 90399323 G C LRRC8D Missense_Mutation p.Q232H 0.16 tolerated(0.13) benign(0.002) TCGA-KU-A6H7-01 1 94544910 94544910 C A ABCA4 Missense_Mutation p.D403Y 0.28 deleterious(0) probably_damaging(0.927) TCGA-KU-A6H7-01 20 16347835 16347835 G A KIF16B Nonsense_Mutation p.Q1379* 0.15 TCGA-KU-A6H7-01 20 3199199 3199199 C T ITPA Missense_Mutation p.S111L 0.13 deleterious(0) probably_damaging(0.996) TCGA-KU-A6H7-01 20 35742407 35742407 C T MROH8 Missense_Mutation p.D920N 0.11 tolerated(0.35) possibly_damaging(0.809) TCGA-KU-A6H7-01 20 37534656 37534656 C T PPP1R16B Silent p.L247L 0.38 TCGA-KU-A6H7-01 20 58318283 58318283 G C PHACTR3 Missense_Mutation p.W80C 0.11 deleterious(0) probably_damaging(0.999) TCGA-KU-A6H7-01 20 9546591 9546591 C T PAK7 Silent p.V477V 0.29 TCGA-KU-A6H7-01 21 38114091 38114091 G C SIM2 Missense_Mutation p.Q308H 0.27 deleterious(0.02) benign(0.286) TCGA-KU-A6H7-01 21 45732997 45732997 C T PFKL Silent p.V188V 0.18 TCGA-KU-A6H7-01 22 19470230 19470230 C T CDC45 Silent p.L74L 0.05 TCGA-KU-A6H7-01 22 20749634 20749634 C T ZNF74 Nonsense_Mutation p.Q16* 0.21 TCGA-KU-A6H7-01 22 35684359 35684359 G C HMGXB4 Missense_Mutation p.E533Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-KU-A6H7-01 22 35684398 35684398 G C HMGXB4 Missense_Mutation p.E546Q 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-KU-A6H7-01 22 42071006 42071006 G C NHP2L1 Missense_Mutation p.I106M 0.09 tolerated(0.05) benign(0.329) TCGA-KU-A6H7-01 22 46658465 46658465 G A PKDREJ Missense_Mutation p.A252V 0.15 tolerated(0.21) possibly_damaging(0.523) TCGA-KU-A6H7-01 22 46658489 46658489 G A PKDREJ Missense_Mutation p.S244L 0.17 tolerated(0.1) benign(0.015) TCGA-KU-A6H7-01 2 113514069 113514069 C G CKAP2L Missense_Mutation p.K293N 0.29 deleterious(0.02) benign(0.273) TCGA-KU-A6H7-01 2 1488598 1488598 C T TPO Silent p.F523F 0.12 TCGA-KU-A6H7-01 2 163374320 163374320 C T KCNH7 Missense_Mutation p.R271Q 0.40 deleterious(0.03) probably_damaging(0.981) TCGA-KU-A6H7-01 2 242038854 242038854 C G MTERFD2 Missense_Mutation p.M159I 0.20 tolerated(0.11) benign(0.013) TCGA-KU-A6H7-01 2 242038875 242038875 C T MTERFD2 Silent p.L152L 0.22 TCGA-KU-A6H7-01 2 242038896 242038896 C G MTERFD2 Missense_Mutation p.L145F 0.19 deleterious(0.04) possibly_damaging(0.876) TCGA-KU-A6H7-01 2 27730604 27730604 C T GCKR Silent p.L400L 0.17 TCGA-KU-A6H7-01 2 27730628 27730628 C G GCKR Missense_Mutation p.F408L 0.15 tolerated(0.69) benign(0.021) TCGA-KU-A6H7-01 2 40656466 40656466 C G SLC8A1 Missense_Mutation p.D319H 0.05 tolerated(0.54) benign(0.149) TCGA-KU-A6H7-01 2 74653396 74653396 G A RTKN Missense_Mutation p.R556C 0.22 deleterious_low_confidence(0) benign(0.28) TCGA-KU-A6H7-01 2 86371871 86371871 G C IMMT Missense_Mutation p.I599M 0.06 deleterious(0) possibly_damaging(0.691) TCGA-KU-A6H7-01 3 113345036 113345036 G A SIDT1 Missense_Mutation p.A799T 0.06 deleterious(0) possibly_damaging(0.877) TCGA-KU-A6H7-01 3 128853674 128853674 C A ISY1 Splice_Site p.X203_splice 0.31 TCGA-KU-A6H7-01 3 129389575 129389575 C T TMCC1 Missense_Mutation p.R370K 0.06 tolerated(0.1) benign(0.124) TCGA-KU-A6H7-01 3 133193815 133193815 G T BFSP2 Nonstop_Mutation p.*416Lext*17 0.10 TCGA-KU-A6H7-01 3 141497652 141497652 C A GRK7 Missense_Mutation p.L176M 0.13 deleterious(0) probably_damaging(0.937) TCGA-KU-A6H7-01 3 142280234 142280234 C G ATR Missense_Mutation p.L400F 0.05 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-KU-A6H7-01 3 155485381 155485381 C G C3orf33 Missense_Mutation p.E91Q 0.20 tolerated(0.14) possibly_damaging(0.623) TCGA-KU-A6H7-01 3 16305733 16305733 C T DPH3 Missense_Mutation p.D38N 0.17 tolerated(0.07) possibly_damaging(0.71) TCGA-KU-A6H7-01 3 186442879 186442879 G A KNG1 Missense_Mutation p.E132K 0.30 tolerated(0.24) benign(0.014) TCGA-KU-A6H7-01 3 23574161 23574161 C T UBE2E2 Silent p.S159S 0.30 TCGA-KU-A6H7-01 3 65376848 65376848 C T MAGI1 Nonsense_Mutation p.W795* 0.05 TCGA-KU-A6H7-01 4 13616234 13616234 C G BOD1L1 Missense_Mutation p.E254Q 0.07 probably_damaging(0.992) TCGA-KU-A6H7-01 4 177084360 177084360 G C WDR17 Missense_Mutation p.G993A 0.28 tolerated(0.18) probably_damaging(0.999) TCGA-KU-A6H7-01 4 2696680 2696680 G A FAM193A Missense_Mutation p.D743N 0.14 tolerated(0.11) probably_damaging(0.991) TCGA-KU-A6H7-01 4 83280732 83280732 A T HNRNPD Missense_Mutation p.F117L 0.21 tolerated(0.69) probably_damaging(0.999) TCGA-KU-A6H7-01 4 87967403 87967403 C T AFF1 Missense_Mutation p.P42S 0.19 tolerated(0.39) benign(0.444) TCGA-KU-A6H7-01 4 87968606 87968606 C T AFF1 Nonsense_Mutation p.Q307* 0.13 TCGA-KU-A6H7-01 5 140501704 140501704 T C PCDHB4 Missense_Mutation p.S42P 0.05 deleterious_low_confidence(0) benign(0.125) TCGA-KU-A6H7-01 5 149439334 149439334 C T CSF1R Silent p.L687L 0.08 TCGA-KU-A6H7-01 5 153077603 153077603 G A GRIA1 Splice_Site p.X389_splice 0.15 TCGA-KU-A6H7-01 5 154393830 154393830 A G KIF4B Silent p.K137K 0.27 TCGA-KU-A6H7-01 6 110113840 110113840 C A FIG4 Nonsense_Mutation p.S811* 0.12 TCGA-KU-A6H7-01 6 110514412 110514412 G T CDC40 Missense_Mutation p.D73Y 0.18 deleterious(0.02) possibly_damaging(0.864) TCGA-KU-A6H7-01 6 155532355 155532355 G C TIAM2 Missense_Mutation p.D1028H 0.38 deleterious(0.03) possibly_damaging(0.687) TCGA-KU-A6H7-01 6 160328944 160328944 C T MAS1 Silent p.V319V 0.19 TCGA-KU-A6H7-01 6 30632611 30632611 C T DHX16 Silent p.K428K 0.08 TCGA-KU-A6H7-01 6 32122955 32122955 C T PPT2 Missense_Mutation p.S117L 0.24 deleterious(0) probably_damaging(0.998) TCGA-KU-A6H7-01 6 52355018 52355018 C G EFHC1 Nonsense_Mutation p.S574* 0.09 TCGA-KU-A6H7-01 6 7402876 7402876 G C RIOK1 Missense_Mutation p.R205T 0.16 tolerated(0.16) probably_damaging(0.996) TCGA-KU-A6H7-01 6 7403092 7403092 G A RIOK1 Silent p.V243V 0.12 TCGA-KU-A6H7-01 7 11500389 11500389 C T THSD7A Nonsense_Mutation p.W835* 0.28 TCGA-KU-A6H7-01 7 116340200 116340200 C T MET Silent p.A354A 0.20 TCGA-KU-A6H7-01 7 135635385 135635385 C T MTPN Missense_Mutation p.E78K 0.05 deleterious(0) possibly_damaging(0.849) TCGA-KU-A6H7-01 7 139106952 139106952 G A LUC7L2 Missense_Mutation p.D415N 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-KU-A6H7-01 7 44571799 44571799 G A NPC1L1 Silent p.V809V 0.24 TCGA-KU-A6H7-01 7 75104419 75104419 G A POM121C 5'UTR 0.20 TCGA-KU-A6H7-01 7 82584766 82584766 C G PCLO Missense_Mutation p.D1835H 0.29 unknown(0) TCGA-KU-A6H7-01 7 82584883 82584883 C G PCLO Missense_Mutation p.E1796Q 0.33 unknown(0) TCGA-KU-A6H7-01 7 82585411 82585411 C G PCLO Missense_Mutation p.D1620H 0.05 unknown(0) TCGA-KU-A6H7-01 7 87908879 87908879 C G STEAP4 Missense_Mutation p.R405T 0.17 deleterious(0.01) benign(0.008) TCGA-KU-A6H7-01 7 98563391 98563391 G A TRRAP Missense_Mutation p.R2343Q 0.17 probably_damaging(0.922) TCGA-KU-A6H7-01 8 129061434 129061434 G A MIR1207 RNA 0.26 TCGA-KU-A6H7-01 8 18729586 18729586 G A PSD3 Missense_Mutation p.A263V 0.13 tolerated_low_confidence(0.48) benign(0.004) TCGA-KU-A6H7-01 8 42188429 42188429 C G IKBKB Intron 0.19 TCGA-KU-A6H7-01 8 61533317 61533317 G - RAB2A Frame_Shift_Del p.G210Afs*10 0.14 TCGA-KU-A6H7-01 8 66639126 66639126 G C PDE7A Missense_Mutation p.L302V 0.29 deleterious(0.04) benign(0.173) TCGA-KU-A6H7-01 8 67062613 67062613 A T TRIM55 Missense_Mutation p.K299N 0.21 deleterious(0.04) benign(0.078) TCGA-KU-A6H7-01 8 67342601 67342601 G C RRS1 3'UTR 0.20 TCGA-KU-A6H7-01 9 107555499 107555499 G C ABCA1 Missense_Mutation p.F1863L 0.06 deleterious(0.01) benign(0.151) TCGA-KU-A6H7-01 9 13138131 13138131 C G MPDZ Missense_Mutation p.G1342A 0.13 deleterious(0.05) probably_damaging(0.966) TCGA-KU-A6H7-01 9 135985758 135985758 G C RALGDS Missense_Mutation p.S138C 0.12 deleterious(0) possibly_damaging(0.766) TCGA-KU-A6H7-01 9 139743811 139743811 C T PHPT1 5'UTR 0.21 TCGA-KU-A6H7-01 9 75450988 75451003 TTTTCCTGTTCTACCC - TMC1 3'UTR 0.35 TCGA-KU-A6H7-01 9 93650884 93650884 C T SYK Missense_Mutation p.L604F 0.40 deleterious(0) probably_damaging(1) TCGA-KU-A6H7-01 X 106229364 106229364 G A MORC4 Silent p.F125F 0.18 TCGA-KU-A6H7-01 X 114537943 114537943 C T LUZP4 Missense_Mutation p.S101F 0.21 tolerated(0.08) probably_damaging(0.955) TCGA-KU-A6H7-01 X 152815068 152815068 C T ATP2B3 Silent p.T484T 0.24 TCGA-KU-A6H7-01 X 153283528 153283528 G A IRAK1 Nonsense_Mutation p.Q280* 0.12 TCGA-KU-A6H7-01 X 153631068 153631068 G C DNASE1L1 Missense_Mutation p.Q297E 0.14 tolerated_low_confidence(0.33) unknown(0) TCGA-KU-A6H7-01 X 17818621 17818621 T G RAI2 Missense_Mutation p.K504Q 0.26 deleterious(0) unknown(0) TCGA-KU-A6H7-01 X 54957774 54957774 G A TRO 3'UTR 0.13 TCGA-KU-A6H7-01 X 70387117 70387117 C G NLGN3 Silent p.L390L 0.20 TCGA-KU-A6H8-01 10 64382885 64382885 A T ZNF365 Missense_Mutation p.H335L 0.13 deleterious_low_confidence(0.03) benign(0.001) TCGA-KU-A6H8-01 10 71690203 71690203 C A COL13A1 Silent p.G515G 0.15 TCGA-KU-A6H8-01 12 51504700 51504700 A - TFCP2 Frame_Shift_Del p.F175Sfs*24 0.11 TCGA-KU-A6H8-01 12 78604218 78604218 C T NAV3 Missense_Mutation p.S2338L 0.11 deleterious(0) possibly_damaging(0.509) TCGA-KU-A6H8-01 13 33638061 33638061 G T KL Missense_Mutation p.G926V 0.14 deleterious(0) probably_damaging(1) TCGA-KU-A6H8-01 15 93518176 93518176 C G CHD2 Missense_Mutation p.S858C 0.12 deleterious(0) probably_damaging(1) TCGA-KU-A6H8-01 16 15111006 15111006 A G PDXDC1 Missense_Mutation p.Y281C 0.07 tolerated(0.11) probably_damaging(0.971) TCGA-KU-A6H8-01 17 42156002 42156002 G A HDAC5 Silent p.A1066A 0.10 TCGA-KU-A6H8-01 17 48628464 48628464 C T SPATA20 Missense_Mutation p.L497F 0.09 deleterious(0) probably_damaging(0.991) TCGA-KU-A6H8-01 17 53156045 53156045 A T STXBP4 Splice_Site p.X436_splice 0.07 TCGA-KU-A6H8-01 18 55368320 55368320 T C ATP8B1 Missense_Mutation p.M169V 0.18 deleterious(0.01) benign(0.202) TCGA-KU-A6H8-01 19 12781579 12781579 T A WDR83 Missense_Mutation p.D150E 0.13 tolerated(0.15) benign(0.066) TCGA-KU-A6H8-01 19 7670214 7670214 A G CAMSAP3 Missense_Mutation p.Y84C 0.16 deleterious(0) probably_damaging(0.976) TCGA-KU-A6H8-01 1 110931878 110931878 A G SLC16A4 Missense_Mutation p.I23T 0.15 deleterious(0.01) benign(0.14) TCGA-KU-A6H8-01 1 158326628 158326628 C T CD1E Missense_Mutation p.S370L 0.08 tolerated(0.44) benign(0.002) TCGA-KU-A6H8-01 1 16257187 16257187 C A SPEN Missense_Mutation p.D1484E 0.11 probably_damaging(0.99) TCGA-KU-A6H8-01 2 179453918 179453918 G A TTN Missense_Mutation p.T20845M 0.11 TCGA-KU-A6H8-01 2 234243614 234243614 A G SAG Silent p.K271K 0.14 TCGA-KU-A6H8-01 3 118624539 118624539 G A IGSF11 Missense_Mutation p.R203W 0.16 deleterious(0) probably_damaging(0.97) TCGA-KU-A6H8-01 3 193042744 193042744 G A ATP13A5 Missense_Mutation p.A528V 0.12 deleterious(0.04) benign(0.152) TCGA-KU-A6H8-01 3 38938441 38938441 G A SCN11A Silent p.C766C 0.11 TCGA-KU-A6H8-01 4 163032513 163032513 T A FSTL5 Silent p.G12G 0.06 TCGA-KU-A6H8-01 4 163032514 163032514 C T FSTL5 Missense_Mutation p.G12E 0.06 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-KU-A6H8-01 4 22390104 22390104 C A GPR125 Nonsense_Mutation p.G1064* 0.19 TCGA-KU-A6H8-01 4 88535050 88535050 C T DSPP Silent p.G412G 0.14 TCGA-KU-A6H8-01 7 116397793 116397793 C A MET Missense_Mutation p.H689Q 0.14 tolerated(0.56) benign(0.413) TCGA-KU-A6H8-01 9 35562500 35562500 G T FAM166B Missense_Mutation p.L206M 0.23 tolerated(0.06) probably_damaging(0.936) TCGA-KU-A6H8-01 X 54276495 54276495 C T WNK3 Missense_Mutation p.R882H 0.33 deleterious(0.01) benign(0.021) TCGA-MT-A51W-01 10 129866487 129866487 A T PTPRE Missense_Mutation p.K315M 0.16 tolerated(0.09) possibly_damaging(0.907) TCGA-MT-A51W-01 10 21139394 21139394 T C NEBL Missense_Mutation p.K349R 0.17 tolerated(0.2) benign(0.02) TCGA-MT-A51W-01 10 27408260 27408261 - A YME1L1 Frame_Shift_Ins p.M567Ifs*16 0.14 TCGA-MT-A51W-01 10 50863262 50863262 G T CHAT Missense_Mutation p.D586Y 0.08 deleterious(0) probably_damaging(0.927) TCGA-MT-A51W-01 10 96012146 96012146 G A PLCE1 Missense_Mutation p.R1057Q 0.11 tolerated(0.09) possibly_damaging(0.848) TCGA-MT-A51W-01 11 104879599 104879599 A C CASP5 Missense_Mutation p.V52G 0.20 deleterious_low_confidence(0.01) benign(0.039) TCGA-MT-A51W-01 11 1977596 1977596 G C MRPL23 Missense_Mutation p.Q136H 0.08 tolerated(0.38) possibly_damaging(0.687) TCGA-MT-A51W-01 11 55735289 55735289 C G OR10AG1 Missense_Mutation p.L217F 0.08 deleterious(0.02) possibly_damaging(0.767) TCGA-MT-A51W-01 11 61665720 61665720 C G RAB3IL1 3'UTR 0.21 TCGA-MT-A51W-01 11 62290779 62290779 C G AHNAK Missense_Mutation p.E3704Q 0.08 benign(0.098) TCGA-MT-A51W-01 11 62291089 62291089 C G AHNAK Silent p.L3600L 0.10 TCGA-MT-A51W-01 11 62299999 62299999 C G AHNAK Missense_Mutation p.K630N 0.08 probably_damaging(0.99) TCGA-MT-A51W-01 11 65273249 65273249 A C MALAT1 RNA 0.24 TCGA-MT-A51W-01 12 112323725 112323725 T A MAPKAPK5 Missense_Mutation p.L285Q 0.15 deleterious(0) probably_damaging(0.98) TCGA-MT-A51W-01 12 117710243 117710243 T A NOS1 Missense_Mutation p.T596S 0.17 tolerated(0.1) probably_damaging(0.992) TCGA-MT-A51W-01 12 13768577 13768577 C T GRIN2B Silent p.P450P 0.19 TCGA-MT-A51W-01 12 70824527 70824527 G A KCNMB4 3'UTR 0.21 TCGA-MT-A51W-01 12 7084997 7084997 A G EMG1 3'UTR 0.15 TCGA-MT-A51W-01 12 994643 994643 C G WNK1 Missense_Mutation p.S1558C 0.18 tolerated_low_confidence(0.15) benign(0.033) TCGA-MT-A51W-01 14 24424399 24424400 - C DHRS4 Frame_Shift_Ins p.R96Pfs*36 0.09 TCGA-MT-A51W-01 14 58830908 58830908 G A ARID4A Missense_Mutation p.E701K 0.13 deleterious(0.01) benign(0.201) TCGA-MT-A51W-01 14 59113480 59113480 C T DACT1 Silent p.Y713Y 0.18 TCGA-MT-A51W-01 14 93693350 93693350 G C UBR7 Missense_Mutation p.R416T 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-MT-A51W-01 15 43658664 43658664 T C ZSCAN29 Missense_Mutation p.Y289C 0.11 tolerated(0.1) probably_damaging(0.959) TCGA-MT-A51W-01 15 44029016 44029016 C G RNU6-354P 5'Flank 0.21 TCGA-MT-A51W-01 15 62257047 62257047 G C VPS13C Missense_Mutation p.S1022C 0.11 deleterious(0) probably_damaging(0.982) TCGA-MT-A51W-01 15 64010891 64010891 T C HERC1 Missense_Mutation p.Y1287C 0.17 probably_damaging(0.962) TCGA-MT-A51W-01 16 107117 107117 T C SNRNP25 Missense_Mutation p.F125L 0.19 deleterious(0.04) probably_damaging(0.99) TCGA-MT-A51W-01 16 30750523 30750523 C G SRCAP Silent p.S3054S 0.20 TCGA-MT-A51W-01 16 31504971 31504971 T A C16orf58 Missense_Mutation p.E304V 0.08 tolerated(0.13) benign(0.145) TCGA-MT-A51W-01 17 48072347 48072347 C A DLX3 Missense_Mutation p.D6Y 0.14 deleterious(0) possibly_damaging(0.522) TCGA-MT-A51W-01 17 7577566 7577566 T C TP53 Missense_Mutation p.N239D 0.35 deleterious(0) probably_damaging(1) TCGA-MT-A51W-01 19 17983383 17983383 C G SLC5A5 Silent p.L85L 0.27 TCGA-MT-A51W-01 19 2132553 2132553 C T AP3D1 Missense_Mutation p.D127N 0.10 deleterious(0) probably_damaging(0.971) TCGA-MT-A51W-01 19 41937220 41937220 G T ATP5SL 3'Flank 0.14 TCGA-MT-A51W-01 19 42260722 42260722 C A CEACAM6 Silent p.P93P 0.08 TCGA-MT-A51W-01 19 49131018 49131018 G A SPHK2 Missense_Mutation p.G194D 0.21 deleterious(0) probably_damaging(0.982) TCGA-MT-A51W-01 19 52519999 52519999 C A ZNF614 Missense_Mutation p.E284D 0.23 deleterious(0.01) benign(0.009) TCGA-MT-A51W-01 19 52618995 52618995 G A ZNF616 Silent p.F474F 0.12 TCGA-MT-A51W-01 19 9089203 9089203 T C MUC16 Missense_Mutation p.N871S 0.14 unknown(0) TCGA-MT-A51W-01 1 16255489 16255489 G T SPEN Missense_Mutation p.Q918H 0.19 possibly_damaging(0.789) TCGA-MT-A51W-01 1 185891515 185891515 C G HMCN1 Nonsense_Mutation p.S302* 0.14 TCGA-MT-A51W-01 1 190423828 190423828 C A BRINP3 Missense_Mutation p.D65Y 0.09 deleterious(0) possibly_damaging(0.478) TCGA-MT-A51W-01 1 198288545 198288545 C T NEK7 Nonsense_Mutation p.R268* 0.09 TCGA-MT-A51W-01 1 204234159 204234159 C G PLEKHA6 Missense_Mutation p.E98Q 0.20 deleterious(0) benign(0.371) TCGA-MT-A51W-01 1 223401022 223401022 G A SUSD4 Silent p.F325F 0.14 TCGA-MT-A51W-01 1 226567780 226567780 G C PARP1 Silent p.V462V 0.12 TCGA-MT-A51W-01 1 40131868 40131868 C T NT5C1A Missense_Mutation p.R59Q 0.11 deleterious(0.04) benign(0.317) TCGA-MT-A51W-01 1 40363463 40363463 C G MYCL Missense_Mutation p.E256Q 0.16 tolerated(0.32) benign(0.394) TCGA-MT-A51W-01 1 6324633 6324633 G T ACOT7 3'UTR 0.18 TCGA-MT-A51W-01 1 67185026 67185026 C G SGIP1 Silent p.L560L 0.13 TCGA-MT-A51W-01 20 57429935 57429935 G A GNAS Missense_Mutation p.D539N 0.30 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-MT-A51W-01 22 36653381 36653381 C G APOL1 Missense_Mutation p.P55A 0.16 deleterious(0) probably_damaging(0.97) TCGA-MT-A51W-01 2 10269561 10269561 C T RRM2 3'UTR 0.27 TCGA-MT-A51W-01 2 141259405 141259405 C A LRP1B Missense_Mutation p.G2901C 0.06 probably_damaging(0.991) TCGA-MT-A51W-01 2 212426726 212426726 G A ERBB4 Nonsense_Mutation p.Q797* 0.20 TCGA-MT-A51W-01 2 26739314 26739314 G A OTOF Missense_Mutation p.R161W 0.09 deleterious(0.04) possibly_damaging(0.528) TCGA-MT-A51W-01 2 42935134 42935134 A T MTA3 Silent p.G414G 0.14 TCGA-MT-A51W-01 2 55873415 55873415 C G PNPT1 Missense_Mutation p.E573Q 0.17 tolerated(0.06) possibly_damaging(0.517) TCGA-MT-A51W-01 3 112251706 112251706 T A ATG3 Intron 0.22 TCGA-MT-A51W-01 3 118865466 118865466 G A C3orf30 Missense_Mutation p.E144K 0.21 deleterious(0.02) benign(0.086) TCGA-MT-A51W-01 3 118865597 118865597 G C C3orf30 Missense_Mutation p.E187D 0.17 tolerated(0.47) benign(0.081) TCGA-MT-A51W-01 3 118865650 118865650 G C C3orf30 Missense_Mutation p.R205T 0.12 deleterious(0.02) benign(0.056) TCGA-MT-A51W-01 3 164735605 164735605 C G SI Missense_Mutation p.D1193H 0.08 deleterious(0) probably_damaging(0.999) TCGA-MT-A51W-01 3 164908105 164908105 G A SLITRK3 Silent p.L172L 0.22 TCGA-MT-A51W-01 4 48088525 48088525 G C TXK Missense_Mutation p.S305C 0.09 tolerated(0.15) benign(0.005) TCGA-MT-A51W-01 4 55161520 55161520 G C PDGFRA 3'UTR 0.19 TCGA-MT-A51W-01 5 140515776 140515776 A T PCDHB5 Missense_Mutation p.N254Y 0.31 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-MT-A51W-01 5 172518576 172518576 A G CREBRF Intron 0.45 TCGA-MT-A51W-01 5 180048764 180048764 C T FLT4 Missense_Mutation p.D600N 0.36 tolerated(0.11) probably_damaging(0.939) TCGA-MT-A51W-01 5 26988473 26988473 T A CDH9 5'UTR 0.27 TCGA-MT-A51W-01 6 109787621 109787622 - A ZBTB24 Frame_Shift_Ins p.L509Ffs*5 0.17 TCGA-MT-A51W-01 6 110935826 110935826 G A CDK19 Missense_Mutation p.S474F 0.24 deleterious_low_confidence(0) unknown(0) TCGA-MT-A51W-01 6 133850034 133850034 A G EYA4 3'UTR 0.14 TCGA-MT-A51W-01 6 26158602 26158602 G C HIST1H2BD Missense_Mutation p.D69H 0.06 deleterious_low_confidence(0.01) benign(0.084) TCGA-MT-A51W-01 6 33381858 33381858 G A PHF1 Missense_Mutation p.E242K 0.16 deleterious(0) probably_damaging(0.99) TCGA-MT-A51W-01 6 44220884 44220884 C A HSP90AB1 Silent p.R612R 0.09 TCGA-MT-A51W-01 6 56420405 56420405 G A DST Silent p.S2335S 0.12 TCGA-MT-A51W-01 6 56765377 56765377 C T DST Missense_Mutation p.A87T 0.18 deleterious_low_confidence(0.01) benign(0.012) TCGA-MT-A51W-01 6 66054005 66054005 C T EYS Missense_Mutation p.E509K 0.08 tolerated(0.64) benign(0.078) TCGA-MT-A51W-01 6 94068105 94068105 G A EPHA7 Missense_Mutation p.S286F 0.08 tolerated(0.06) benign(0.176) TCGA-MT-A51W-01 7 107399511 107399511 C A CBLL1 Missense_Mutation p.P455H 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-MT-A51W-01 7 156979548 156979548 A G UBE3C Silent p.V388V 0.17 TCGA-MT-A51W-01 7 76610368 76610368 G T UPK3B Intron 0.15 TCGA-MT-A51W-01 7 88965282 88965282 G A ZNF804B Missense_Mutation p.A996T 0.06 tolerated(0.58) benign(0.01) TCGA-MT-A51W-01 8 144942069 144942069 G A EPPK1 Missense_Mutation p.R1785C 0.26 benign(0.153) TCGA-MT-A51W-01 8 51503438 51503438 G C SNTG1 Splice_Site p.X271_splice 0.19 TCGA-MT-A51W-01 8 70981418 70981418 G T PRDM14 Silent p.L226L 0.08 TCGA-MT-A51W-01 8 80577145 80577145 A G STMN2 3'UTR 0.18 TCGA-MT-A51W-01 9 100122338 100122338 T C CCDC180 Silent p.L1190L 0.11 TCGA-MT-A51W-01 9 125047560 125047560 C T MRRF Silent p.F151F 0.06 TCGA-MT-A51W-01 9 131862836 131862836 C T CRAT Missense_Mutation p.G313D 0.25 deleterious(0.03) probably_damaging(0.936) TCGA-MT-A51W-01 9 88924883 88924883 C G ZCCHC6 Missense_Mutation p.R1143T 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-MT-A51W-01 9 96408047 96408047 G A PHF2 Missense_Mutation p.V146I 0.17 tolerated(0.11) unknown(0) TCGA-MT-A51X-01 10 12238228 12238230 GCG - CDC123 5'UTR 0.20 TCGA-MT-A51X-01 10 6506274 6506274 C T PRKCQ Splice_Site p.X482_splice 0.19 TCGA-MT-A51X-01 10 91098516 91098516 A T IFIT3 Missense_Mutation p.E35V 0.17 deleterious(0) probably_damaging(0.929) TCGA-MT-A51X-01 11 111407659 111407659 A C C11orf88 3'UTR 0.39 TCGA-MT-A51X-01 11 30032606 30032606 G A KCNA4 Silent p.V540V 0.17 TCGA-MT-A51X-01 11 5968672 5968672 C T OR56A3 Silent p.S32S 0.28 TCGA-MT-A51X-01 11 60699157 60699157 G A TMEM132A Splice_Site p.X339_splice 0.09 TCGA-MT-A51X-01 11 64109521 64109521 C T CCDC88B Missense_Mutation p.P244L 0.12 deleterious(0) possibly_damaging(0.828) TCGA-MT-A51X-01 11 67765217 67765217 C T UNC93B1 Silent p.T278T 0.11 TCGA-MT-A51X-01 11 7111246 7111246 C T RBMXL2 Missense_Mutation p.P299S 0.11 tolerated(0.06) possibly_damaging(0.641) TCGA-MT-A51X-01 12 100676739 100676739 T C SCYL2 5'UTR 0.48 TCGA-MT-A51X-01 12 112703750 112703750 C G HECTD4 Silent p.V666V 0.14 TCGA-MT-A51X-01 12 12630396 12630396 C T DUSP16 Missense_Mutation p.E457K 0.05 tolerated(0.15) benign(0.296) TCGA-MT-A51X-01 12 57111578 57111578 C T NACA Intron 0.22 TCGA-MT-A51X-01 12 67698406 67698406 C T CAND1 Missense_Mutation p.L439F 0.26 deleterious(0) possibly_damaging(0.575) TCGA-MT-A51X-01 12 93251231 93251231 G T EEA1 Silent p.V92V 0.36 TCGA-MT-A51X-01 14 65209951 65209951 C T PLEKHG3 Missense_Mutation p.R1008C 0.17 tolerated(0.21) possibly_damaging(0.62) TCGA-MT-A51X-01 15 28408274 28408274 G A HERC2 Missense_Mutation p.A3571V 0.09 benign(0.043) TCGA-MT-A51X-01 15 43813897 43813897 G T MAP1A Missense_Mutation p.V76L 0.08 probably_damaging(0.986) TCGA-MT-A51X-01 15 50555449 50555449 G A HDC Nonsense_Mutation p.R63* 0.16 TCGA-MT-A51X-01 16 30435664 30435664 G A DCTPP1 Missense_Mutation p.R135C 0.12 deleterious(0.04) benign(0.017) TCGA-MT-A51X-01 16 31366597 31366599 CTC - ITGAX In_Frame_Del p.L10del 0.24 TCGA-MT-A51X-01 16 67223060 67223060 G A EXOC3L1 Missense_Mutation p.R24W 0.22 deleterious(0) probably_damaging(0.941) TCGA-MT-A51X-01 16 89348249 89348249 C T ANKRD11 Silent p.R1567R 0.13 TCGA-MT-A51X-01 17 39521441 39521441 C T KRT33B Missense_Mutation p.A288T 0.08 deleterious(0.03) benign(0.277) TCGA-MT-A51X-01 17 44626014 44626014 G A LRRC37A2 Missense_Mutation p.G1170D 0.37 tolerated(0.16) probably_damaging(0.994) TCGA-MT-A51X-01 17 7834416 7834416 G A TRAPPC1 Silent p.Y74Y 0.62 TCGA-MT-A51X-01 19 12885390 12885390 C T HOOK2 Intron 0.11 TCGA-MT-A51X-01 19 40411941 40411941 G A FCGBP Silent p.C1229C 0.23 TCGA-MT-A51X-01 19 58868541 58868541 C T ZNF497 Missense_Mutation p.R154H 0.22 deleterious(0) probably_damaging(0.998) TCGA-MT-A51X-01 1 110738332 110738332 G T SLC6A17 Missense_Mutation p.E539D 0.37 deleterious(0) probably_damaging(0.993) TCGA-MT-A51X-01 1 114128119 114128119 C T MAGI3 Nonsense_Mutation p.R222* 0.10 TCGA-MT-A51X-01 1 145536959 145536959 A T ITGA10 Missense_Mutation p.Q780L 0.20 deleterious(0) benign(0.102) TCGA-MT-A51X-01 1 156708490 156708490 G A MRPL24 Missense_Mutation p.L3F 0.31 deleterious(0) probably_damaging(0.999) TCGA-MT-A51X-01 1 162557312 162557312 A G UAP1 Silent p.R294R 0.35 TCGA-MT-A51X-01 1 16531390 16531390 G A ARHGEF19 Missense_Mutation p.R591C 0.50 deleterious(0) probably_damaging(0.991) TCGA-MT-A51X-01 1 196759349 196759349 G A CFHR3 Missense_Mutation p.R263K 0.12 tolerated(1) probably_damaging(0.92) TCGA-MT-A51X-01 1 215807838 215807838 G A USH2A Missense_Mutation p.S5087F 0.21 possibly_damaging(0.778) TCGA-MT-A51X-01 1 34068082 34068082 C T CSMD2 Silent p.P2201P 0.20 TCGA-MT-A51X-01 1 44044558 44044558 C T PTPRF Missense_Mutation p.R216C 0.11 deleterious(0) probably_damaging(1) TCGA-MT-A51X-01 1 57476820 57476820 C A DAB1 Missense_Mutation p.A524S 0.16 tolerated(0.46) benign(0.327) TCGA-MT-A51X-01 1 7724087 7724087 C T CAMTA1 Nonsense_Mutation p.Q494* 0.20 TCGA-MT-A51X-01 20 31019454 31019454 T C ASXL1 Silent p.A317A 0.30 TCGA-MT-A51X-01 21 28327064 28327064 C T ADAMTS5 Missense_Mutation p.E411K 0.22 deleterious(0) probably_damaging(1) TCGA-MT-A51X-01 21 46935587 46935587 C G SLC19A1 Missense_Mutation p.Q587H 0.22 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-MT-A51X-01 22 37770945 37770945 G A ELFN2 Silent p.Y210Y 0.14 TCGA-MT-A51X-01 2 223791815 223791815 C A ACSL3 Missense_Mutation p.T458N 0.11 tolerated(0.45) benign(0.376) TCGA-MT-A51X-01 2 28812421 28812421 G A PLB1 Silent p.S640S 0.22 TCGA-MT-A51X-01 2 51255221 51255221 C T NRXN1 Missense_Mutation p.R64H 0.43 tolerated(0.17) benign(0.002) TCGA-MT-A51X-01 2 55874497 55874497 C T PNPT1 Silent p.L529L 0.15 TCGA-MT-A51X-01 2 74779538 74779538 G A LOXL3 Missense_Mutation p.T75M 0.10 deleterious(0) probably_damaging(0.988) TCGA-MT-A51X-01 2 86071564 86071564 G A ST3GAL5 Silent p.I321I 0.11 TCGA-MT-A51X-01 3 15686064 15686064 C T BTD Missense_Mutation p.T234I 0.09 deleterious(0) probably_damaging(1) TCGA-MT-A51X-01 3 164907641 164907641 G T SLITRK3 Nonsense_Mutation p.Y326* 0.10 TCGA-MT-A51X-01 4 156773462 156773462 C A ASIC5 Missense_Mutation p.A198S 0.08 tolerated(0.3) benign(0.02) TCGA-MT-A51X-01 4 47427768 47427768 C T GABRB1 Silent p.S386S 0.18 TCGA-MT-A51X-01 4 57194619 57194619 C A KIAA1211 3'UTR 0.22 TCGA-MT-A51X-01 5 158139244 158139244 G A EBF1 Silent p.N489N 0.14 TCGA-MT-A51X-01 5 93159946 93159946 T A FAM172A Missense_Mutation p.I272F 0.46 deleterious(0.04) benign(0.032) TCGA-MT-A51X-01 6 136597075 136597075 C T BCLAF1 Missense_Mutation p.E530K 0.06 deleterious(0.03) possibly_damaging(0.486) TCGA-MT-A51X-01 6 157522598 157522598 C T ARID1B Nonsense_Mutation p.R1624* 0.14 TCGA-MT-A51X-01 7 37956085 37956085 C T SFRP4 Missense_Mutation p.V19M 0.52 tolerated(0.16) possibly_damaging(0.841) TCGA-MT-A51X-01 8 110655121 110655121 C T SYBU Missense_Mutation p.R22Q 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-MT-A51X-01 8 121290407 121290407 A C COL14A1 Missense_Mutation p.K1091Q 0.04 tolerated(0.41) benign(0.006) TCGA-MT-A51X-01 8 12957976 12957976 C T DLC1 Missense_Mutation p.V624I 0.11 tolerated(0.35) benign(0.007) TCGA-MT-A51X-01 8 16026136 16026136 T C MSR1 Missense_Mutation p.D154G 0.20 deleterious(0.03) benign(0.17) TCGA-MT-A51X-01 8 2820898 2820898 C T CSMD1 Silent p.P3100P 0.26 TCGA-MT-A51X-01 8 92983053 92983053 G A RUNX1T1 Missense_Mutation p.R469C 0.50 deleterious(0) probably_damaging(1) TCGA-MT-A51X-01 8 95403862 95403862 G A RAD54B Missense_Mutation p.P595L 0.08 deleterious(0) probably_damaging(1) TCGA-MT-A51X-01 9 13224399 13224399 C G MPDZ Missense_Mutation p.D123H 0.36 deleterious(0.01) possibly_damaging(0.868) TCGA-MT-A51X-01 9 35720905 35720905 A C TLN1 Missense_Mutation p.F370L 0.08 tolerated(0.05) probably_damaging(0.988) TCGA-MT-A51X-01 9 73235024 73235024 G A TRPM3 Silent p.D687D 0.18 TCGA-MT-A51X-01 X 34962238 34962238 C T FAM47B Silent p.T430T 0.28 TCGA-MT-A67A-01 10 127408282 127408282 C T EDRF1 5'UTR 0.33 TCGA-MT-A67A-01 10 23290888 23290888 T C ARMC3 Missense_Mutation p.L489P 0.22 deleterious(0) probably_damaging(0.989) TCGA-MT-A67A-01 10 29751238 29751238 G A SVIL Missense_Mutation p.H2124Y 0.25 deleterious(0.01) benign(0.078) TCGA-MT-A67A-01 10 75407581 75407581 C T SYNPO2L Missense_Mutation p.R610H 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-MT-A67A-01 10 8106041 8106041 C T GATA3 Silent p.C288C 0.23 TCGA-MT-A67A-01 11 118882006 118882006 C T CCDC84 Intron 0.09 TCGA-MT-A67A-01 11 3800201 3800201 C A NUP98 Missense_Mutation p.G86V 0.20 deleterious(0.01) probably_damaging(1) TCGA-MT-A67A-01 11 55036813 55036813 G T TRIM48 Nonstop_Mutation p.*225Lext*167 0.17 TCGA-MT-A67A-01 11 5530115 5530115 C T UBQLN3 Missense_Mutation p.R225H 0.27 deleterious(0.03) benign(0.091) TCGA-MT-A67A-01 11 55370996 55370996 T C OR4C11 Missense_Mutation p.Y285C 0.65 deleterious(0) probably_damaging(1) TCGA-MT-A67A-01 11 73020819 73020819 C G ARHGEF17 Missense_Mutation p.S379W 0.29 deleterious_low_confidence(0) benign(0.059) TCGA-MT-A67A-01 11 76371962 76371962 C T LRRC32 Silent p.L225L 0.24 TCGA-MT-A67A-01 12 109051080 109051080 C T CORO1C Silent p.P250P 0.17 TCGA-MT-A67A-01 12 11150472 11150472 C A TAS2R20 Translation_Start_Site p.M1? 0.10 deleterious(0.02) possibly_damaging(0.718) TCGA-MT-A67A-01 12 11285960 11285960 C T TAS2R30 Missense_Mutation p.R295Q 0.14 tolerated(0.35) benign(0.005) TCGA-MT-A67A-01 12 2983350 2983350 C A FOXM1 Missense_Mutation p.G99C 0.38 deleterious(0) probably_damaging(1) TCGA-MT-A67A-01 12 48535703 48535703 A G PFKM Missense_Mutation p.T574A 0.33 tolerated(0.72) benign(0.007) TCGA-MT-A67A-01 12 49438647 49438647 G A KMT2D Nonsense_Mutation p.R1615* 0.21 TCGA-MT-A67A-01 12 70963656 70963656 T A PTPRB Missense_Mutation p.N1145Y 0.18 deleterious(0.04) possibly_damaging(0.694) TCGA-MT-A67A-01 12 97137545 97137545 T C C12orf55 Missense_Mutation p.S2472P 0.41 deleterious(0) benign(0.002) TCGA-MT-A67A-01 13 103698602 103698602 C T SLC10A2 Missense_Mutation p.A310T 0.10 tolerated(0.46) benign(0.001) TCGA-MT-A67A-01 13 46629916 46629916 G A CPB2 Silent p.G356G 0.15 TCGA-MT-A67A-01 14 22932115 22932115 G A TRDC Missense_Mutation p.E65K 0.29 tolerated(0.42) benign(0.055) TCGA-MT-A67A-01 14 64519872 64519872 C G SYNE2 Missense_Mutation p.R3081G 0.17 benign(0.004) TCGA-MT-A67A-01 14 75602474 75602474 C T TMED10 Missense_Mutation p.R176H 0.28 deleterious(0.02) possibly_damaging(0.458) TCGA-MT-A67A-01 14 80130227 80130227 C A NRXN3 Missense_Mutation p.T811N 0.26 deleterious(0) benign(0.002) TCGA-MT-A67A-01 15 43783898 43783898 C A TP53BP1 Nonsense_Mutation p.E114* 0.37 TCGA-MT-A67A-01 15 51014390 51014390 T - SPPL2A Frame_Shift_Del p.I420Lfs*29 0.13 TCGA-MT-A67A-01 15 51233739 51233739 T G AP4E1 Silent p.P348P 0.30 TCGA-MT-A67A-01 15 77906613 77906613 C T LINGO1 Missense_Mutation p.A546T 0.15 tolerated(0.45) benign(0.002) TCGA-MT-A67A-01 15 93043602 93043602 G T C15orf32 Missense_Mutation p.R170I 0.13 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-MT-A67A-01 16 20636834 20636834 C T ACSM1 Missense_Mutation p.G480R 0.29 deleterious(0) probably_damaging(0.995) TCGA-MT-A67A-01 16 2334301 2334301 C T ABCA3 Missense_Mutation p.A1281T 0.23 tolerated(0.62) benign(0.005) TCGA-MT-A67A-01 16 31228091 31228091 G A PYDC1 Missense_Mutation p.R87W 0.26 deleterious(0.01) probably_damaging(0.932) TCGA-MT-A67A-01 16 72108202 72108202 C G HPR Silent p.P37P 0.18 TCGA-MT-A67A-01 16 75681748 75681748 G C TERF2IP 5'UTR 0.15 TCGA-MT-A67A-01 17 26731758 26731758 C A SLC46A1 Silent p.L319L 0.26 TCGA-MT-A67A-01 17 40267773 40267773 C T KAT2A Missense_Mutation p.D615N 0.19 deleterious(0) probably_damaging(0.99) TCGA-MT-A67A-01 17 56059289 56059290 - GGTCA VEZF1 Frame_Shift_Ins p.H246Lfs*4 0.14 TCGA-MT-A67A-01 17 70120487 70120487 C A SOX9 Missense_Mutation p.H497N 0.21 tolerated(0.41) probably_damaging(0.975) TCGA-MT-A67A-01 18 55328606 55328606 G A ATP8B1 Missense_Mutation p.T836I 0.19 tolerated(1) benign(0.002) TCGA-MT-A67A-01 19 10226486 10226486 G C EIF3G Missense_Mutation p.N238K 0.19 tolerated(0.59) benign(0.269) TCGA-MT-A67A-01 19 10250385 10250385 G A DNMT1 Silent p.R1305R 0.33 TCGA-MT-A67A-01 19 12758310 12758310 C T MAN2B1 Missense_Mutation p.V923I 0.25 tolerated(0.54) benign(0.014) TCGA-MT-A67A-01 19 15770152 15770152 G A CYP4F3 Missense_Mutation p.R507H 0.21 deleterious(0.01) probably_damaging(0.924) TCGA-MT-A67A-01 19 21607933 21607933 A G ZNF493 3'UTR 0.57 TCGA-MT-A67A-01 19 2732730 2732730 G A SLC39A3 3'UTR 0.36 TCGA-MT-A67A-01 19 36229073 36229075 AGA - KMT2B In_Frame_Del p.K2619del 0.17 TCGA-MT-A67A-01 19 40996096 40996096 G A SPTBN4 Missense_Mutation p.V146M 0.15 deleterious(0) possibly_damaging(0.866) TCGA-MT-A67A-01 19 42396787 42396787 C T ARHGEF1 Missense_Mutation p.R176W 0.06 deleterious(0) probably_damaging(0.98) TCGA-MT-A67A-01 19 42930829 42930829 G A LIPE Missense_Mutation p.A158V 0.19 tolerated_low_confidence(0.18) benign(0.007) TCGA-MT-A67A-01 19 5664419 5664419 C G SAFB Nonsense_Mutation p.S768* 0.23 TCGA-MT-A67A-01 19 56735007 56735007 C T ZSCAN5A Missense_Mutation p.R194K 0.21 tolerated(0.19) benign(0.11) TCGA-MT-A67A-01 19 58024429 58024429 G A ZNF773 3'Flank 0.25 TCGA-MT-A67A-01 19 8550638 8550638 C T HNRNPM Silent p.D442D 0.24 TCGA-MT-A67A-01 19 8550642 8550642 A G HNRNPM Missense_Mutation p.M444V 0.24 tolerated(0.08) benign(0.014) TCGA-MT-A67A-01 1 110168331 110168331 G A AMPD2 Silent p.P144P 0.31 TCGA-MT-A67A-01 1 120458296 120458296 C G NOTCH2 Missense_Mutation p.S2350T 0.24 tolerated(0.31) benign(0.031) TCGA-MT-A67A-01 1 146751862 146751862 G T CHD1L Missense_Mutation p.G568V 0.17 tolerated(0.16) benign(0.099) TCGA-MT-A67A-01 1 15287307 15287307 C G KAZN Silent p.T118T 0.12 TCGA-MT-A67A-01 1 17314721 17314721 C T ATP13A2 Missense_Mutation p.R924H 0.20 deleterious(0) probably_damaging(0.996) TCGA-MT-A67A-01 1 228612911 228612911 G A HIST3H3 Missense_Mutation p.P39L 0.19 deleterious_low_confidence(0.01) benign(0.23) TCGA-MT-A67A-01 1 232574963 232574963 C T SIPA1L2 Missense_Mutation p.D1308N 0.25 tolerated(0.16) benign(0.064) TCGA-MT-A67A-01 1 237829886 237829886 G A RYR2 Silent p.L2837L 0.36 TCGA-MT-A67A-01 1 24082410 24082410 T C TCEB3 Silent p.Y649Y 0.52 TCGA-MT-A67A-01 1 248436658 248436658 G A OR2T33 Silent p.D153D 0.12 TCGA-MT-A67A-01 1 248616186 248616186 G T OR2T2 Missense_Mutation p.A30S 0.11 tolerated(1) benign(0.005) TCGA-MT-A67A-01 1 249151461 249151461 G A ZNF692 Silent p.S154S 0.26 TCGA-MT-A67A-01 1 78200091 78200091 A G USP33 Silent p.G186G 0.23 TCGA-MT-A67A-01 1 95007178 95007178 G A F3 Silent p.A5A 0.16 TCGA-MT-A67A-01 20 34505570 34505570 G A PHF20 Missense_Mutation p.D664N 0.26 deleterious(0.02) probably_damaging(1) TCGA-MT-A67A-01 20 61982102 61982102 T C CHRNA4 Missense_Mutation p.R221G 0.23 tolerated(0.07) possibly_damaging(0.745) TCGA-MT-A67A-01 21 33066556 33066557 AT - SCAF4 Frame_Shift_Del p.M428Vfs*2 0.21 TCGA-MT-A67A-01 21 33074679 33074679 C T SCAF4 Missense_Mutation p.R112H 0.29 probably_damaging(0.995) TCGA-MT-A67A-01 21 34668542 34668542 G A IL10RB Silent p.S286S 0.27 TCGA-MT-A67A-01 21 38390309 38390309 G T RIPPLY3 Missense_Mutation p.E125D 0.39 tolerated(0.27) possibly_damaging(0.801) TCGA-MT-A67A-01 21 47817943 47817943 C T PCNT Missense_Mutation p.R1488W 0.30 possibly_damaging(0.876) TCGA-MT-A67A-01 2 11053054 11053054 G A KCNF1 Missense_Mutation p.V168I 0.05 tolerated(0.25) benign(0.005) TCGA-MT-A67A-01 2 171850363 171850363 G T TLK1 Missense_Mutation p.S743Y 0.33 deleterious(0.05) possibly_damaging(0.845) TCGA-MT-A67A-01 2 178098956 178098956 A G NFE2L2 Missense_Mutation p.L30P 0.25 deleterious(0) probably_damaging(1) TCGA-MT-A67A-01 2 190445254 190445254 G C SLC40A1 5'UTR 0.21 TCGA-MT-A67A-01 2 219603352 219603352 C T TTLL4 Missense_Mutation p.S318F 0.26 tolerated(0.45) benign(0.002) TCGA-MT-A67A-01 2 220502516 220502516 C T SLC4A3 Missense_Mutation p.R944C 0.19 deleterious(0) probably_damaging(0.999) TCGA-MT-A67A-01 2 74598256 74598256 T C DCTN1 Silent p.L231L 0.24 TCGA-MT-A67A-01 2 85836692 85836692 G A C2orf68 Missense_Mutation p.R82C 0.24 tolerated(0.18) benign(0) TCGA-MT-A67A-01 2 8952586 8952586 C T KIDINS220 Missense_Mutation p.G148D 0.28 deleterious(0) probably_damaging(1) TCGA-MT-A67A-01 3 101370490 101370490 A G ZBTB11 Silent p.A894A 0.21 TCGA-MT-A67A-01 3 127323893 127323893 G A MCM2 Silent p.A189A 0.20 TCGA-MT-A67A-01 3 128292388 128292388 C - C3orf27 Frame_Shift_Del p.G62Vfs*18 0.21 TCGA-MT-A67A-01 3 130159339 130159339 A G COL6A5 Missense_Mutation p.N2053D 0.27 tolerated(0.06) benign(0.016) TCGA-MT-A67A-01 3 14174410 14174410 C T TMEM43 Nonsense_Mutation p.R163* 0.21 TCGA-MT-A67A-01 3 189584501 189584501 G A TP63 Missense_Mutation p.R266Q 0.20 deleterious(0.02) benign(0.116) TCGA-MT-A67A-01 3 402045 402045 A G CHL1 Missense_Mutation p.Y415C 0.24 deleterious(0) possibly_damaging(0.866) TCGA-MT-A67A-01 3 49160788 49160788 C T LAMB2 Missense_Mutation p.R1334Q 0.18 tolerated(0.38) benign(0.026) TCGA-MT-A67A-01 4 13604617 13604617 G A BOD1L1 Silent p.L1303L 0.31 TCGA-MT-A67A-01 4 140641035 140641035 C T MAML3 Missense_Mutation p.M953I 0.23 benign(0.003) TCGA-MT-A67A-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.18 TCGA-MT-A67A-01 4 153247161 153247162 - A FBXW7 Frame_Shift_Ins p.L547Ffs*4 0.19 TCGA-MT-A67A-01 4 187540557 187540557 A - FAT1 Frame_Shift_Del p.Y2395Mfs*15 0.23 TCGA-MT-A67A-01 4 22749537 22749538 - T GBA3 Frame_Shift_Ins p.A305Cfs*29 0.32 TCGA-MT-A67A-01 4 7056021 7056021 C T TADA2B Missense_Mutation p.P168L 0.15 deleterious(0.03) possibly_damaging(0.636) TCGA-MT-A67A-01 5 118454614 118454614 G A DMXL1 Missense_Mutation p.C283Y 0.20 tolerated(1) benign(0) TCGA-MT-A67A-01 5 150497394 150497394 A C ANXA6 Nonsense_Mutation p.Y481* 0.29 TCGA-MT-A67A-01 5 3599817 3599817 C T IRX1 Missense_Mutation p.P252L 0.25 tolerated(0.43) benign(0.103) TCGA-MT-A67A-01 5 38955713 38955713 G A RICTOR Missense_Mutation p.R865C 0.16 deleterious(0) probably_damaging(0.999) TCGA-MT-A67A-01 5 57755840 57755840 G C PLK2 5'UTR 0.15 TCGA-MT-A67A-01 6 112486365 112486365 T C LAMA4 Missense_Mutation p.I555M 0.29 tolerated(0.07) possibly_damaging(0.857) TCGA-MT-A67A-01 6 131199330 131199330 G A EPB41L2 Missense_Mutation p.R653C 0.27 deleterious(0) probably_damaging(0.994) TCGA-MT-A67A-01 6 134210907 134210907 G A TCF21 Silent p.A124A 0.27 TCGA-MT-A67A-01 6 160176437 160176437 G A WTAP Missense_Mutation p.V329I 0.21 tolerated_low_confidence(0.93) benign(0.001) TCGA-MT-A67A-01 6 30681756 30681756 C T MDC1 Missense_Mutation p.R114H 0.27 deleterious(0) probably_damaging(0.981) TCGA-MT-A67A-01 6 31556510 31556510 G A LST1 3'UTR 0.14 TCGA-MT-A67A-01 6 31831415 31831417 TCT - SLC44A4 In_Frame_Del p.K707del 0.19 TCGA-MT-A67A-01 6 46826415 46826415 C T GPR116 Silent p.Q1075Q 0.34 TCGA-MT-A67A-01 6 49585874 49585874 C G RHAG Silent p.L133L 0.08 TCGA-MT-A67A-01 6 83849831 83849832 - T DOPEY1 Splice_Site p.X1744_splice 0.25 TCGA-MT-A67A-01 6 87964638 87964638 G C ZNF292 Missense_Mutation p.E431Q 0.33 deleterious(0) probably_damaging(0.99) TCGA-MT-A67A-01 6 90024934 90024934 G A GABRR2 5'UTR 0.26 TCGA-MT-A67A-01 7 101918550 101918550 G A CUX1 Missense_Mutation p.E493K 0.19 tolerated(0.36) benign(0.036) TCGA-MT-A67A-01 7 141672669 141672669 C T TAS2R38 Missense_Mutation p.R274H 0.17 tolerated(1) benign(0) TCGA-MT-A67A-01 7 149524048 149524048 G C SSPO Intron 0.40 TCGA-MT-A67A-01 7 44721372 44721372 G A OGDH Silent p.V420V 0.20 TCGA-MT-A67A-01 7 55259557 55259557 A G EGFR Missense_Mutation p.E872G 0.31 deleterious(0) probably_damaging(0.984) TCGA-MT-A67A-01 7 55259561 55259561 A C EGFR Silent p.G873G 0.32 TCGA-MT-A67A-01 7 5983010 5983010 G C RSPH10B Missense_Mutation p.A568G 0.19 tolerated(0.18) benign(0.013) TCGA-MT-A67A-01 7 6210871 6210871 C T CYTH3 Missense_Mutation p.R175H 0.18 tolerated(0.12) benign(0.006) TCGA-MT-A67A-01 7 75182847 75182847 C T HIP1 Missense_Mutation p.A734T 0.05 tolerated(0.55) benign(0) TCGA-MT-A67A-01 7 93633654 93633654 G - BET1 5'UTR 0.22 TCGA-MT-A67A-01 7 99802998 99802998 C T STAG3 Missense_Mutation p.R1077C 0.17 deleterious(0.03) benign(0.022) TCGA-MT-A67A-01 8 98289480 98289480 G A TSPYL5 Missense_Mutation p.T198M 0.24 tolerated(0.43) possibly_damaging(0.474) TCGA-MT-A67A-01 9 111956584 111956584 G A EPB41L4B Silent p.S713S 0.04 TCGA-MT-A67A-01 9 124528890 124528890 C T DAB2IP Silent p.L498L 0.18 TCGA-MT-A67A-01 9 130868110 130868110 G A SLC25A25 Missense_Mutation p.V284I 0.12 tolerated(0.09) benign(0.252) TCGA-MT-A67A-01 9 139410452 139410452 G T NOTCH1 Nonsense_Mutation p.Y550* 0.12 TCGA-MT-A67A-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.54 TCGA-MT-A67A-01 9 6553457 6553457 G A GLDC Missense_Mutation p.R790W 0.23 deleterious(0.01) benign(0.224) TCGA-MT-A67A-01 9 96051327 96051327 G A WNK2 Missense_Mutation p.E1468K 0.36 unknown(0) TCGA-MT-A67A-01 9 97717510 97717510 C A C9orf3 Silent p.I571I 0.09 TCGA-MT-A67A-01 X 123654610 123654610 G A TENM1 Missense_Mutation p.P1020S 0.18 tolerated(0.13) possibly_damaging(0.53) TCGA-MT-A67A-01 X 147062848 147062848 C T FMR1NB 5'Flank 0.12 TCGA-MT-A67A-01 X 30714164 30714164 G T GK Missense_Mutation p.L186F 0.24 deleterious(0.02) possibly_damaging(0.844) TCGA-MT-A67A-01 X 99663057 99663057 G A PCDH19 Missense_Mutation p.T180M 0.24 deleterious(0) probably_damaging(0.99) TCGA-MT-A67D-01 10 104135126 104135126 C T GBF1 Missense_Mutation p.S1223F 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-MT-A67D-01 10 112724466 112724466 C A SHOC2 Nonsense_Mutation p.S117* 0.07 TCGA-MT-A67D-01 10 114194100 114194100 T C ZDHHC6 Silent p.G286G 0.05 TCGA-MT-A67D-01 10 43016049 43016049 T A ZNF37BP RNA 0.11 TCGA-MT-A67D-01 10 49612966 49612966 C T MAPK8 Missense_Mutation p.T65I 0.11 tolerated(0.82) probably_damaging(0.966) TCGA-MT-A67D-01 10 8106031 8106031 G A GATA3 Missense_Mutation p.C285Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-MT-A67D-01 11 1028255 1028255 G T MUC6 Missense_Mutation p.T575N 0.14 unknown(0) TCGA-MT-A67D-01 11 194461 194461 G A SCGB1C1 3'UTR 0.11 TCGA-MT-A67D-01 11 1959683 1959683 G A TNNT3 Silent p.G246G 0.25 TCGA-MT-A67D-01 11 46394044 46394044 G T DGKZ Nonsense_Mutation p.G520* 0.15 TCGA-MT-A67D-01 11 607585 607590 GCATCA - PHRF1 In_Frame_Del p.I710_S711del 0.18 TCGA-MT-A67D-01 11 61897977 61897977 C T INCENP Silent p.A326A 0.13 TCGA-MT-A67D-01 11 62348581 62348581 G A TUT1 Silent p.P267P 0.16 TCGA-MT-A67D-01 12 124414967 124414967 G A DNAH10 Missense_Mutation p.A4093T 0.09 possibly_damaging(0.507) TCGA-MT-A67D-01 12 20868160 20868160 C T SLCO1C1 Missense_Mutation p.P206L 0.09 deleterious(0) probably_damaging(0.987) TCGA-MT-A67D-01 12 47629097 47629097 C A PCED1B Missense_Mutation p.S84Y 0.19 deleterious(0) probably_damaging(0.979) TCGA-MT-A67D-01 12 49438264 49438264 G A KMT2D Missense_Mutation p.P1669S 0.17 possibly_damaging(0.844) TCGA-MT-A67D-01 12 7842781 7842781 A T GDF3 Missense_Mutation p.L263H 0.18 deleterious(0) probably_damaging(0.989) TCGA-MT-A67D-01 12 8212660 8212660 T G C3AR1 Missense_Mutation p.N41T 0.18 deleterious(0) probably_damaging(1) TCGA-MT-A67D-01 13 100959482 100959482 A T PCCA Missense_Mutation p.I441F 0.21 deleterious(0) probably_damaging(0.993) TCGA-MT-A67D-01 13 32893410 32893410 G A BRCA2 Silent p.L88L 0.18 TCGA-MT-A67D-01 13 32911001 32911002 - A BRCA2 Frame_Shift_Ins p.Y839Ifs*42 0.10 TCGA-MT-A67D-01 14 24682710 24682710 G A CHMP4A Missense_Mutation p.P22L 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-MT-A67D-01 14 35253084 35253084 T C BAZ1A Silent p.L627L 0.15 TCGA-MT-A67D-01 14 77732853 77732853 T C NGB 3'UTR 0.12 TCGA-MT-A67D-01 14 94849510 94849510 G A SERPINA1 Missense_Mutation p.S22F 0.08 tolerated(0.49) benign(0.008) TCGA-MT-A67D-01 15 39909959 39909959 C T FSIP1 Missense_Mutation p.S559N 0.14 tolerated(0.13) benign(0.021) TCGA-MT-A67D-01 15 57545575 57545575 T C TCF12 Missense_Mutation p.L459S 0.10 deleterious(0.01) probably_damaging(1) TCGA-MT-A67D-01 15 69718764 69718764 C T KIF23 Missense_Mutation p.P313S 0.18 deleterious(0) probably_damaging(1) TCGA-MT-A67D-01 15 85681183 85681183 G T PDE8A 3'UTR 0.21 TCGA-MT-A67D-01 16 24950790 24950790 G A ARHGAP17 Missense_Mutation p.P540L 0.11 tolerated(0.1) benign(0.009) TCGA-MT-A67D-01 16 2764296 2764296 C T PRSS27 Missense_Mutation p.R93K 0.17 tolerated(0.37) benign(0.099) TCGA-MT-A67D-01 16 47005331 47005331 C T DNAJA2 Missense_Mutation p.G98S 0.13 tolerated(0.11) benign(0.1) TCGA-MT-A67D-01 16 603477 603477 G A CAPN15 Silent p.T1074T 0.08 TCGA-MT-A67D-01 16 67214239 67214239 C T KIAA0895L Missense_Mutation p.R92Q 0.25 tolerated_low_confidence(0.34) benign(0.002) TCGA-MT-A67D-01 16 711364 711364 G A WDR90 Missense_Mutation p.R1179Q 0.20 tolerated(0.66) benign(0.108) TCGA-MT-A67D-01 16 716723 716723 G A WDR90 Silent p.G1645G 0.22 TCGA-MT-A67D-01 16 76556015 76556015 C T CNTNAP4 Silent p.N799N 0.12 TCGA-MT-A67D-01 16 89661966 89661966 G A CPNE7 Silent p.A573A 0.16 TCGA-MT-A67D-01 17 2600086 2600086 C T CLUH Silent p.E666E 0.29 TCGA-MT-A67D-01 17 27308504 27308504 G A SEZ6 Silent p.G203G 0.16 TCGA-MT-A67D-01 17 34540008 34540008 C G CCL4L1 3'UTR 0.22 TCGA-MT-A67D-01 17 43009516 43009516 C T KIF18B Missense_Mutation p.G433R 0.26 tolerated(0.08) benign(0.033) TCGA-MT-A67D-01 17 59668532 59668532 C T NACA2 Missense_Mutation p.E4K 0.06 tolerated(0.06) possibly_damaging(0.905) TCGA-MT-A67D-01 17 73758797 73758797 C - GALK1 Frame_Shift_Del p.E261Kfs*3 0.15 TCGA-MT-A67D-01 18 13048862 13048862 C T CEP192 Missense_Mutation p.T691I 0.31 tolerated(0.18) benign(0.015) TCGA-MT-A67D-01 18 7955231 7955231 G A PTPRM Silent p.E317E 0.25 TCGA-MT-A67D-01 19 19823218 19823218 A T ZNF14 Missense_Mutation p.L291H 0.10 tolerated(0.55) possibly_damaging(0.656) TCGA-MT-A67D-01 19 2276297 2276297 C G C19orf35 Missense_Mutation p.E268D 0.19 tolerated(0.17) possibly_damaging(0.675) TCGA-MT-A67D-01 19 2415714 2415714 C T TMPRSS9 Silent p.G506G 0.07 TCGA-MT-A67D-01 19 36205627 36205627 C T ZBTB32 Silent p.I33I 0.10 TCGA-MT-A67D-01 19 48981550 48981550 A G CYTH2 Missense_Mutation p.I302V 0.14 deleterious(0.04) benign(0.013) TCGA-MT-A67D-01 19 50310533 50310533 C T FUZ Missense_Mutation p.V378M 0.18 tolerated(0.11) benign(0.056) TCGA-MT-A67D-01 19 54973383 54973383 C G LENG9 Missense_Mutation p.E465Q 0.16 tolerated(0.41) benign(0.267) TCGA-MT-A67D-01 19 55889217 55889217 G A TMEM190 Missense_Mutation p.G90S 0.12 tolerated(0.29) benign(0.082) TCGA-MT-A67D-01 19 57175629 57175629 G A ZNF835 Missense_Mutation p.A313V 0.14 deleterious(0) possibly_damaging(0.689) TCGA-MT-A67D-01 19 57716772 57716772 T A ZNF264 Silent p.P56P 0.17 TCGA-MT-A67D-01 19 5844507 5844507 G T FUT3 Missense_Mutation p.S115Y 0.12 tolerated(1) benign(0.001) TCGA-MT-A67D-01 19 58944698 58944698 G T ZNF132 Missense_Mutation p.H705N 0.16 deleterious(0) possibly_damaging(0.886) TCGA-MT-A67D-01 1 100818542 100818542 C T CDC14A Missense_Mutation p.A11V 0.08 tolerated(0.07) benign(0.155) TCGA-MT-A67D-01 1 145561563 145561563 T C ANKRD35 Silent p.H417H 0.11 TCGA-MT-A67D-01 1 151278751 151278751 C T PI4KB Missense_Mutation p.R436Q 0.19 deleterious(0.02) benign(0.324) TCGA-MT-A67D-01 1 153655867 153655867 A C NPR1 Missense_Mutation p.N427H 0.18 tolerated(0.46) possibly_damaging(0.874) TCGA-MT-A67D-01 1 161130737 161130737 C T USP21 Missense_Mutation p.P103S 0.15 deleterious_low_confidence(0.05) benign(0.037) TCGA-MT-A67D-01 1 16785408 16785408 G A NECAP2 Missense_Mutation p.V247M 0.18 deleterious_low_confidence(0.02) benign(0.004) TCGA-MT-A67D-01 1 178854232 178854232 C T RALGPS2 Missense_Mutation p.P309L 0.12 tolerated(0.16) benign(0.002) TCGA-MT-A67D-01 1 19468218 19468218 C T UBR4 Missense_Mutation p.G2745R 0.11 benign(0.372) TCGA-MT-A67D-01 1 203028956 203028956 C T PPFIA4 Missense_Mutation p.P348S 0.37 deleterious(0) possibly_damaging(0.819) TCGA-MT-A67D-01 1 241799085 241799085 G A CHML 5'UTR 0.12 TCGA-MT-A67D-01 1 248551037 248551037 G A OR2T6 Missense_Mutation p.G43E 0.07 deleterious(0.02) possibly_damaging(0.641) TCGA-MT-A67D-01 1 32647005 32647005 A G TXLNA Missense_Mutation p.E111G 0.21 deleterious(0) benign(0.002) TCGA-MT-A67D-01 1 33832911 33832911 G A PHC2 Missense_Mutation p.P261L 0.10 deleterious(0) benign(0.021) TCGA-MT-A67D-01 1 38287981 38287981 C T MTF1 Missense_Mutation p.E527K 0.18 tolerated(0.06) benign(0.325) TCGA-MT-A67D-01 1 68896860 68896860 C A RPE65 Splice_Site p.X447_splice 0.10 TCGA-MT-A67D-01 1 77620301 77620301 C A PIGK Missense_Mutation p.Q273H 0.20 deleterious(0.01) benign(0.103) TCGA-MT-A67D-01 21 35467771 35467771 C T SLC5A3 Missense_Mutation p.L92F 0.13 tolerated(0.11) possibly_damaging(0.748) TCGA-MT-A67D-01 22 19188854 19188854 G A CLTCL1 Missense_Mutation p.R1251W 0.17 deleterious(0.04) benign(0.01) TCGA-MT-A67D-01 22 46704348 46704348 G A GTSE1 Nonsense_Mutation p.W90* 0.08 TCGA-MT-A67D-01 2 125192141 125192141 G A CNTNAP5 Missense_Mutation p.V204M 0.10 deleterious(0.04) benign(0.081) TCGA-MT-A67D-01 2 132275459 132275459 G A AC093838.4 RNA 0.10 TCGA-MT-A67D-01 2 132275460 132275460 A T AC093838.4 RNA 0.10 TCGA-MT-A67D-01 2 141272298 141272298 T C LRP1B Silent p.K2731K 0.17 TCGA-MT-A67D-01 2 163695001 163695001 G T KCNH7 Missense_Mutation p.P10T 0.12 deleterious(0.01) probably_damaging(0.963) TCGA-MT-A67D-01 2 187455132 187455132 C T ITGAV Missense_Mutation p.L23F 0.09 tolerated(0.17) unknown(0) TCGA-MT-A67D-01 2 202149674 202149674 G A CASP8 Missense_Mutation p.C372Y 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-MT-A67D-01 2 215840595 215840595 G T ABCA12 Silent p.G1765G 0.16 TCGA-MT-A67D-01 2 225740797 225740797 G A DOCK10 Missense_Mutation p.L297F 0.08 tolerated(0.07) benign(0.077) TCGA-MT-A67D-01 2 25966250 25966250 C T ASXL2 Missense_Mutation p.E986K 0.09 tolerated(0.08) possibly_damaging(0.818) TCGA-MT-A67D-01 2 54858010 54858010 A G SPTBN1 Silent p.E942E 0.21 TCGA-MT-A67D-01 2 62104184 62104184 C T CCT4 Silent p.G216G 0.14 TCGA-MT-A67D-01 2 65541047 65541047 C T SPRED2 Missense_Mutation p.G282D 0.22 tolerated(0.19) benign(0.15) TCGA-MT-A67D-01 2 79363180 79363180 C A REG1P RNA 0.10 TCGA-MT-A67D-01 2 88991322 88991322 C T RPIA Missense_Mutation p.L36F 0.39 tolerated_low_confidence(0.28) benign(0.036) TCGA-MT-A67D-01 3 141497350 141497350 C A GRK7 Missense_Mutation p.A75D 0.18 tolerated(0.56) benign(0.049) TCGA-MT-A67D-01 3 171338283 171338283 G T PLD1 Nonsense_Mutation p.S874* 0.08 TCGA-MT-A67D-01 3 171406534 171406534 C T PLD1 Missense_Mutation p.E491K 0.10 tolerated(0.07) probably_damaging(0.935) TCGA-MT-A67D-01 3 38058144 38058144 C T PLCD1 Missense_Mutation p.R110H 0.26 tolerated(0.06) benign(0.002) TCGA-MT-A67D-01 3 52406960 52406960 C T DNAH1 Silent p.F2292F 0.10 TCGA-MT-A67D-01 4 106474093 106474093 G A ARHGEF38 Silent p.R57R 0.17 TCGA-MT-A67D-01 4 187539163 187539163 G C FAT1 Silent p.S2859S 0.23 TCGA-MT-A67D-01 4 66217121 66217121 C A EPHA5 Missense_Mutation p.A832S 0.10 tolerated(0.13) probably_damaging(0.992) TCGA-MT-A67D-01 4 71024299 71024299 G A C4orf40 Silent p.P110P 0.18 TCGA-MT-A67D-01 4 89013473 89013473 C T ABCG2 Nonsense_Mutation p.W627* 0.13 TCGA-MT-A67D-01 4 94436372 94436372 T C GRID2 Missense_Mutation p.L668P 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-MT-A67D-01 5 127516612 127516613 - A SLC12A2 Frame_Shift_Ins p.W1049Mfs*5 0.17 TCGA-MT-A67D-01 5 133295400 133295400 G A C5orf15 Missense_Mutation p.P151S 0.24 tolerated(0.18) benign(0.038) TCGA-MT-A67D-01 5 13871034 13871034 G A DNAH5 Missense_Mutation p.R1226W 0.15 possibly_damaging(0.689) TCGA-MT-A67D-01 5 140187569 140187569 C T PCDHA4 Missense_Mutation p.A266V 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-MT-A67D-01 5 140580049 140580049 C T PCDHB11 Silent p.D234D 0.19 TCGA-MT-A67D-01 5 6337355 6337355 C T CTD-2324F15.2 RNA 0.12 TCGA-MT-A67D-01 5 64906779 64906779 T A TRIM23 Missense_Mutation p.D246V 0.16 tolerated(0.05) benign(0.136) TCGA-MT-A67D-01 5 9197403 9197403 C T SEMA5A Silent p.A315A 0.11 TCGA-MT-A67D-01 6 110714266 110714266 C A DDO Silent p.P274P 0.16 TCGA-MT-A67D-01 6 126211861 126211861 G T NCOA7 Missense_Mutation p.M667I 0.10 deleterious(0) probably_damaging(0.993) TCGA-MT-A67D-01 6 136926459 136926459 C G MAP3K5 Missense_Mutation p.R856T 0.30 deleterious(0) probably_damaging(0.996) TCGA-MT-A67D-01 6 26045748 26045748 A T HIST1H3C Missense_Mutation p.K37M 0.20 deleterious_low_confidence(0.01) benign(0.164) TCGA-MT-A67D-01 6 31504170 31504170 T C DDX39B Intron 0.11 TCGA-MT-A67D-01 6 32096926 32096926 C T FKBPL Missense_Mutation p.R211K 0.17 tolerated(0.81) benign(0.001) TCGA-MT-A67D-01 7 101188672 101188672 G A COL26A1 Missense_Mutation p.G253S 0.17 deleterious(0.03) probably_damaging(1) TCGA-MT-A67D-01 7 103237105 103237105 C T RELN Missense_Mutation p.G1113R 0.16 deleterious(0.01) probably_damaging(1) TCGA-MT-A67D-01 7 138713609 138713609 C A ZC3HAV1L Missense_Mutation p.G200V 0.22 deleterious(0) probably_damaging(0.975) TCGA-MT-A67D-01 7 149515760 149515760 C T SSPO RNA 0.09 TCGA-MT-A67D-01 7 150721007 150721007 G A ATG9B Silent p.H168H 0.30 TCGA-MT-A67D-01 7 2613121 2613121 A G IQCE Missense_Mutation p.K155R 0.19 deleterious(0.01) possibly_damaging(0.609) TCGA-MT-A67D-01 7 66103260 66103260 G A KCTD7 Missense_Mutation p.R112H 0.11 deleterious(0) probably_damaging(0.998) TCGA-MT-A67D-01 7 99936401 99936401 A - PILRB 5'UTR 0.22 TCGA-MT-A67D-01 8 141321414 141321414 C T TRAPPC9 Missense_Mutation p.E617K 0.10 tolerated(0.28) probably_damaging(0.979) TCGA-MT-A67D-01 8 42171842 42171842 A G IKBKB Missense_Mutation p.H232R 0.10 tolerated(0.1) probably_damaging(0.95) TCGA-MT-A67D-01 9 113168593 113168594 - T SVEP1 Frame_Shift_Ins p.I3096Nfs*23 0.11 TCGA-MT-A67D-01 9 131107581 131107581 C T SLC27A4 Silent p.T103T 0.17 TCGA-MT-A67D-01 9 139396814 139396814 C T NOTCH1 Missense_Mutation p.G1765D 0.16 tolerated(0.06) probably_damaging(0.984) TCGA-MT-A67D-01 9 140772598 140772598 C G CACNA1B Silent p.V71V 0.12 TCGA-MT-A67D-01 X 54475672 54475672 C T FGD1 Silent p.T726T 0.24 TCGA-MT-A67F-01 10 102249149 102249149 C T SEC31B Missense_Mutation p.E1011K 0.17 tolerated(0.14) benign(0.423) TCGA-MT-A67F-01 10 134219115 134219115 G T PWWP2B Missense_Mutation p.D371Y 0.13 deleterious(0.01) benign(0.311) TCGA-MT-A67F-01 10 18280209 18280209 C G SLC39A12 Missense_Mutation p.L467V 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-MT-A67F-01 10 22024158 22024158 C T MLLT10 Silent p.L983L 0.12 TCGA-MT-A67F-01 10 50916500 50916500 C T C10orf53 Missense_Mutation p.P104L 0.08 deleterious_low_confidence(0) unknown(0) TCGA-MT-A67F-01 10 55721532 55721532 C T PCDH15 Missense_Mutation p.E997K 0.06 deleterious(0) probably_damaging(0.949) TCGA-MT-A67F-01 10 64967345 64967345 C G JMJD1C Missense_Mutation p.D1362H 0.14 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-MT-A67F-01 10 73572567 73572567 G A CDH23 Missense_Mutation p.D945N 0.15 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-MT-A67F-01 10 89265160 89265160 C G MINPP1 Missense_Mutation p.S163W 0.10 deleterious(0.01) probably_damaging(0.981) TCGA-MT-A67F-01 10 89717661 89717661 C A PTEN Nonsense_Mutation p.S229* 0.10 TCGA-MT-A67F-01 10 96006028 96006028 G A PLCE1 Missense_Mutation p.E916K 0.19 tolerated(0.24) benign(0.345) TCGA-MT-A67F-01 11 108196176 108196176 G C ATM Missense_Mutation p.E2238Q 0.12 tolerated(0.32) benign(0.015) TCGA-MT-A67F-01 11 108384223 108384223 C T EXPH5 Missense_Mutation p.E671K 0.09 tolerated(0.14) benign(0.402) TCGA-MT-A67F-01 11 111386771 111386771 G C C11orf88 Missense_Mutation p.R92T 0.12 tolerated(0.61) benign(0.002) TCGA-MT-A67F-01 11 118527565 118527565 G A PHLDB1 3'UTR 0.11 TCGA-MT-A67F-01 11 118895758 118895758 G A SLC37A4 Silent p.F406F 0.09 TCGA-MT-A67F-01 11 124857614 124857614 C G CCDC15 Missense_Mutation p.Q498E 0.13 tolerated(0.15) benign(0.057) TCGA-MT-A67F-01 11 14496058 14496058 C T COPB1 Missense_Mutation p.E574K 0.08 tolerated(0.12) benign(0.001) TCGA-MT-A67F-01 11 16877399 16877399 G A PLEKHA7 Missense_Mutation p.T123I 0.12 deleterious(0.01) benign(0.147) TCGA-MT-A67F-01 11 285220 285220 G C NLRP6 Missense_Mutation p.K865N 0.20 tolerated(0.14) benign(0.317) TCGA-MT-A67F-01 11 34139817 34139817 G A NAT10 Missense_Mutation p.M216I 0.09 tolerated(1) benign(0) TCGA-MT-A67F-01 11 48238785 48238785 C T OR4B1 Silent p.L142L 0.13 TCGA-MT-A67F-01 11 5701271 5701271 G C TRIM5 Missense_Mutation p.S46C 0.10 deleterious(0) probably_damaging(0.999) TCGA-MT-A67F-01 11 57252564 57252564 G A SLC43A1 3'UTR 0.12 TCGA-MT-A67F-01 11 60609623 60609623 G A CCDC86 Missense_Mutation p.R9Q 0.17 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-MT-A67F-01 11 62287510 62287510 G A AHNAK Silent p.F4793F 0.13 TCGA-MT-A67F-01 11 62435317 62435318 - TT METTL12 3'UTR 0.10 TCGA-MT-A67F-01 11 6292373 6292373 G A CCKBR Missense_Mutation p.G315E 0.10 tolerated(1) benign(0.01) TCGA-MT-A67F-01 11 64702545 64702545 C T GPHA2 Missense_Mutation p.R69Q 0.19 deleterious(0.05) possibly_damaging(0.879) TCGA-MT-A67F-01 11 6524045 6524045 C T DNHD1 Missense_Mutation p.S270L 0.11 benign(0.001) TCGA-MT-A67F-01 11 65338157 65338157 C T SSSCA1 Silent p.I34I 0.15 TCGA-MT-A67F-01 11 6540947 6540947 G C DNHD1 Missense_Mutation p.E504Q 0.10 benign(0.178) TCGA-MT-A67F-01 11 65685289 65685289 G C C11orf68 Missense_Mutation p.L175V 0.10 tolerated(0.22) benign(0.041) TCGA-MT-A67F-01 11 65734019 65734019 G C SART1 Missense_Mutation p.E394Q 0.20 tolerated(0.44) benign(0.006) TCGA-MT-A67F-01 11 71668297 71668297 G C RNF121 Missense_Mutation p.E30Q 0.12 tolerated(0.1) benign(0.375) TCGA-MT-A67F-01 12 100489501 100489501 C T UHRF1BP1L Missense_Mutation p.E262K 0.09 deleterious(0) probably_damaging(0.927) TCGA-MT-A67F-01 12 102158185 102158185 G C GNPTAB Missense_Mutation p.S837C 0.15 deleterious(0.02) benign(0.345) TCGA-MT-A67F-01 12 1036313 1036313 G T RAD52 Silent p.L155L 0.11 TCGA-MT-A67F-01 12 110630482 110630482 G C IFT81 Missense_Mutation p.E510Q 0.11 deleterious(0.01) possibly_damaging(0.506) TCGA-MT-A67F-01 12 122617979 122617979 C G MLXIP Missense_Mutation p.H393D 0.15 tolerated(0.71) benign(0.012) TCGA-MT-A67F-01 12 12653598 12653598 G C DUSP16 Missense_Mutation p.S129C 0.11 deleterious(0.01) possibly_damaging(0.809) TCGA-MT-A67F-01 12 130883689 130883689 G T RIMBP2 Missense_Mutation p.F1050L 0.10 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-MT-A67F-01 12 14927629 14927629 G C H2AFJ Missense_Mutation p.K75N 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.884) TCGA-MT-A67F-01 12 15673221 15673221 C T PTPRO Silent p.D622D 0.15 TCGA-MT-A67F-01 12 2602462 2602462 C T CACNA1C Silent p.H341H 0.09 TCGA-MT-A67F-01 12 27950647 27950647 G A KLHL42 Splice_Site p.X356_splice 0.13 TCGA-MT-A67F-01 12 46245376 46245376 C G ARID2 Nonsense_Mutation p.S1157* 0.14 TCGA-MT-A67F-01 12 48578122 48578122 C T C12orf68 Nonsense_Mutation p.Q73* 0.19 TCGA-MT-A67F-01 12 50029170 50029170 G A PRPF40B Missense_Mutation p.E397K 0.11 deleterious(0.03) probably_damaging(0.917) TCGA-MT-A67F-01 12 52314550 52314550 C G ACVRL1 Nonsense_Mutation p.S462* 0.09 TCGA-MT-A67F-01 12 58008163 58008163 G A ARHGEF25 Missense_Mutation p.A275T 0.13 deleterious(0.01) possibly_damaging(0.787) TCGA-MT-A67F-01 12 62708577 62708577 G C USP15 Missense_Mutation p.E119Q 0.08 deleterious(0.04) possibly_damaging(0.878) TCGA-MT-A67F-01 12 7173187 7173187 G A C1S Missense_Mutation p.E262K 0.15 tolerated(0.4) benign(0.042) TCGA-MT-A67F-01 12 72020069 72020069 A G ZFC3H1 Missense_Mutation p.Y1430H 0.11 tolerated(0.6) probably_damaging(0.988) TCGA-MT-A67F-01 12 7293930 7293930 C T CLSTN3 Silent p.L472L 0.12 TCGA-MT-A67F-01 12 8375060 8375060 G C FAM90A1 Silent p.L251L 0.05 TCGA-MT-A67F-01 12 95702245 95702245 G A MIR331 RNA 0.20 TCGA-MT-A67F-01 13 101277794 101277794 G A TMTC4 Missense_Mutation p.R611C 0.12 deleterious(0.05) benign(0.247) TCGA-MT-A67F-01 13 110434679 110434679 C G IRS2 Missense_Mutation p.R1241T 0.13 deleterious(0) probably_damaging(0.916) TCGA-MT-A67F-01 13 35615256 35615256 G A NBEA Missense_Mutation p.E161K 0.09 tolerated(0.08) benign(0.005) TCGA-MT-A67F-01 13 35733543 35733543 G A NBEA Missense_Mutation p.E1079K 0.11 deleterious_low_confidence(0.03) benign(0.076) TCGA-MT-A67F-01 13 36401891 36401891 C T DCLK1 Missense_Mutation p.E430K 0.08 deleterious(0.01) possibly_damaging(0.486) TCGA-MT-A67F-01 13 44457986 44457986 G A LACC1 Missense_Mutation p.G274E 0.10 deleterious(0) probably_damaging(0.964) TCGA-MT-A67F-01 13 77635394 77635394 C G MYCBP2 Missense_Mutation p.E4278Q 0.18 probably_damaging(0.977) TCGA-MT-A67F-01 14 105420387 105420387 C G AHNAK2 Missense_Mutation p.L467F 0.15 possibly_damaging(0.899) TCGA-MT-A67F-01 14 105609893 105609893 C T JAG2 Missense_Mutation p.R1056Q 0.23 deleterious(0.04) benign(0.009) TCGA-MT-A67F-01 14 105716824 105716824 G A BTBD6 Missense_Mutation p.E425K 0.19 tolerated(0.74) probably_damaging(0.992) TCGA-MT-A67F-01 14 21825480 21825480 C T SUPT16H Missense_Mutation p.E846K 0.07 deleterious(0) probably_damaging(0.997) TCGA-MT-A67F-01 14 22675976 22675976 C T TRAV34 Silent p.I96I 0.22 TCGA-MT-A67F-01 14 23567289 23567289 G C C14orf119 Nonstop_Mutation p.*141Sext*1 0.04 TCGA-MT-A67F-01 14 24600964 24600964 C T RP11-468E2.6 Silent p.V252V 0.14 TCGA-MT-A67F-01 14 64473776 64473776 C T SYNE2 Silent p.I1471I 0.16 TCGA-MT-A67F-01 14 65417635 65417635 C T RAB15 Intron 0.21 TCGA-MT-A67F-01 14 72191394 72191394 C T SIPA1L1 Nonsense_Mutation p.Q1507* 0.19 TCGA-MT-A67F-01 14 74409110 74409110 G A FAM161B Nonsense_Mutation p.Q475* 0.14 TCGA-MT-A67F-01 14 74409245 74409245 G A FAM161B Missense_Mutation p.R430W 0.15 deleterious(0) probably_damaging(0.921) TCGA-MT-A67F-01 14 77491694 77491694 C A IRF2BPL 3'UTR 0.13 TCGA-MT-A67F-01 14 77941989 77941989 G A ISM2 Silent p.N555N 0.09 TCGA-MT-A67F-01 14 88892873 88892873 G A SPATA7 Missense_Mutation p.D224N 0.13 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 14 96912912 96912912 G A AK7 Missense_Mutation p.E280K 0.16 tolerated(0.26) benign(0.066) TCGA-MT-A67F-01 15 40062670 40062670 C T FSIP1 Missense_Mutation p.D90N 0.12 tolerated(0.09) benign(0.258) TCGA-MT-A67F-01 15 43892865 43892865 G A STRC Silent p.F1620F 0.10 TCGA-MT-A67F-01 15 43893683 43893683 G C STRC Missense_Mutation p.L1538V 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-MT-A67F-01 15 52725429 52725429 C T MYO5A Silent p.L27L 0.12 TCGA-MT-A67F-01 15 69739207 69739207 C T KIF23 Intron 0.13 TCGA-MT-A67F-01 15 74284538 74284538 C G STOML1 Silent p.A9A 0.09 TCGA-MT-A67F-01 15 74948152 74948152 C T EDC3 Missense_Mutation p.E248K 0.14 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 15 90982576 90982576 C G IQGAP1 Missense_Mutation p.F160L 0.09 deleterious(0) benign(0.022) TCGA-MT-A67F-01 16 11010232 11010232 C T CIITA Missense_Mutation p.A993V 0.13 deleterious(0.01) benign(0.426) TCGA-MT-A67F-01 16 11940376 11940376 G C RSL1D1 Missense_Mutation p.S206C 0.15 deleterious(0) probably_damaging(0.996) TCGA-MT-A67F-01 16 231027 231027 G A HBQ1 Missense_Mutation p.D117N 0.09 deleterious(0.03) benign(0.098) TCGA-MT-A67F-01 16 27221654 27221654 G A KDM8 Silent p.V108V 0.07 TCGA-MT-A67F-01 16 28143700 28143700 C G XPO6 Missense_Mutation p.E521Q 0.26 tolerated(0.34) benign(0.009) TCGA-MT-A67F-01 16 50707318 50707318 C G SNX20 Nonstop_Mutation p.*317Sext*87 0.17 TCGA-MT-A67F-01 16 5083377 5083377 C T NAGPA Missense_Mutation p.E147K 0.17 benign(0.064) TCGA-MT-A67F-01 16 56864452 56864452 G A NUP93 Missense_Mutation p.E314K 0.15 deleterious(0.02) possibly_damaging(0.725) TCGA-MT-A67F-01 16 56865890 56865890 G A NUP93 Missense_Mutation p.D408N 0.11 tolerated(0.09) benign(0.345) TCGA-MT-A67F-01 16 56867258 56867258 G A NUP93 Missense_Mutation p.A493T 0.13 deleterious(0) probably_damaging(0.985) TCGA-MT-A67F-01 16 56916369 56916369 C T SLC12A3 Silent p.I543I 0.12 TCGA-MT-A67F-01 16 603390 603390 C T CAPN15 Silent p.I1045I 0.12 TCGA-MT-A67F-01 16 67910785 67910785 C T EDC4 Nonsense_Mutation p.Q121* 0.12 TCGA-MT-A67F-01 16 84520502 84520502 G A TLDC1 Silent p.V231V 0.15 TCGA-MT-A67F-01 16 88780994 88780994 G A CTU2 Splice_Site p.X401_splice 0.16 TCGA-MT-A67F-01 17 1386278 1386278 C G MYO1C Missense_Mutation p.E141D 0.16 deleterious(0) probably_damaging(0.999) TCGA-MT-A67F-01 17 15983977 15983977 G A NCOR1 Missense_Mutation p.P1081L 0.11 probably_damaging(0.999) TCGA-MT-A67F-01 17 1634467 1634467 G A WDR81 Missense_Mutation p.D1358N 0.16 deleterious(0) probably_damaging(0.996) TCGA-MT-A67F-01 17 17766143 17766143 G A TOM1L2 Silent p.V368V 0.12 TCGA-MT-A67F-01 17 2585103 2585103 C T PAFAH1B1 3'UTR 0.23 TCGA-MT-A67F-01 17 30815064 30815064 C T CDK5R1 Silent p.V142V 0.13 TCGA-MT-A67F-01 17 34050652 34050652 G A AP2B1 Silent p.L930L 0.06 TCGA-MT-A67F-01 17 35913868 35913868 C T SYNRG Missense_Mutation p.A653T 0.12 tolerated_low_confidence(0.26) benign(0.005) TCGA-MT-A67F-01 17 36896596 36896596 G A PCGF2 Silent p.L20L 0.08 TCGA-MT-A67F-01 17 37093512 37093512 C G FBXO47 Missense_Mutation p.L425F 0.15 tolerated(0.27) benign(0.219) TCGA-MT-A67F-01 17 40733930 40733930 G A FAM134C Silent p.P434P 0.12 TCGA-MT-A67F-01 17 40839868 40839868 G A CNTNAP1 Nonsense_Mutation p.W392* 0.20 TCGA-MT-A67F-01 17 42248167 42248167 G A ASB16 Missense_Mutation p.E4K 0.16 tolerated(0.11) benign(0.006) TCGA-MT-A67F-01 17 42476593 42476593 C T GPATCH8 Missense_Mutation p.R951K 0.08 tolerated(0.12) unknown(0) TCGA-MT-A67F-01 17 44592479 44592479 C G LRRC37A2 Missense_Mutation p.Q801E 0.15 tolerated(0.48) benign(0.078) TCGA-MT-A67F-01 17 45229206 45229206 G A CDC27 Missense_Mutation p.L352F 0.11 tolerated(0.79) benign(0.17) TCGA-MT-A67F-01 17 48676880 48676880 C T CACNA1G Missense_Mutation p.P1117L 0.17 deleterious(0) benign(0.006) TCGA-MT-A67F-01 17 55927329 55927329 G A MRPS23 Missense_Mutation p.R15W 0.16 deleterious(0.02) possibly_damaging(0.625) TCGA-MT-A67F-01 17 72348967 72348967 C G KIF19 Missense_Mutation p.S663C 0.09 tolerated(0.07) benign(0.043) TCGA-MT-A67F-01 17 73498128 73498128 G A CASKIN2 Silent p.F1009F 0.20 TCGA-MT-A67F-01 17 7360041 7360041 G A CHRNB1 Silent p.%3D 0.11 TCGA-MT-A67F-01 17 73947546 73947546 G A ACOX1 Missense_Mutation p.H353Y 0.11 tolerated(1) benign(0.002) TCGA-MT-A67F-01 17 78396012 78396012 C T ENDOV Missense_Mutation p.L124F 0.17 tolerated(0.37) benign(0.12) TCGA-MT-A67F-01 17 80790328 80790328 C G ZNF750 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.986) TCGA-MT-A67F-01 18 22020483 22020483 G A IMPACT Missense_Mutation p.E131K 0.16 tolerated(0.13) benign(0.013) TCGA-MT-A67F-01 18 22020498 22020498 G A IMPACT Missense_Mutation p.E136K 0.17 tolerated(0.19) benign(0.006) TCGA-MT-A67F-01 18 3814187 3814187 G C DLGAP1 Missense_Mutation p.I348M 0.17 deleterious(0) possibly_damaging(0.736) TCGA-MT-A67F-01 18 48327852 48327852 G A MRO Missense_Mutation p.S165L 0.04 tolerated(0.06) benign(0.028) TCGA-MT-A67F-01 18 697244 697244 C T ENOSF1 Missense_Mutation p.R123K 0.14 deleterious(0.01) benign(0.307) TCGA-MT-A67F-01 18 71816318 71816318 G T TIMM21 Missense_Mutation p.G92V 0.11 tolerated(0.13) benign(0.142) TCGA-MT-A67F-01 18 9584724 9584724 G A PPP4R1 Nonsense_Mutation p.R230* 0.14 TCGA-MT-A67F-01 19 11100024 11100024 G A SMARCA4 Missense_Mutation p.E384K 0.10 probably_damaging(0.995) TCGA-MT-A67F-01 19 12817099 12817099 A G TNPO2 Missense_Mutation p.F527L 0.10 deleterious(0.04) benign(0.034) TCGA-MT-A67F-01 19 12958754 12958754 C A MAST1 Missense_Mutation p.F219L 0.15 deleterious(0.01) possibly_damaging(0.793) TCGA-MT-A67F-01 19 13184299 13184299 G A NFIX Missense_Mutation p.R229K 0.16 tolerated(0.07) possibly_damaging(0.737) TCGA-MT-A67F-01 19 13341014 13341014 G A CACNA1A Missense_Mutation p.L1804F 0.08 possibly_damaging(0.765) TCGA-MT-A67F-01 19 14024040 14024040 C G CC2D1A Silent p.L146L 0.10 TCGA-MT-A67F-01 19 23557444 23557444 G A ZNF91 Silent p.F51F 0.11 TCGA-MT-A67F-01 19 24102355 24102355 C G ZNF726 Intron 0.10 TCGA-MT-A67F-01 19 33470811 33470811 G C RHPN2 3'UTR 0.23 TCGA-MT-A67F-01 19 374409 374409 G A THEG Silent p.I107I 0.14 TCGA-MT-A67F-01 19 37643489 37643489 G C ZNF585A Missense_Mutation p.H383D 0.10 deleterious(0) benign(0.004) TCGA-MT-A67F-01 19 38572705 38572705 G A SIPA1L3 Missense_Mutation p.R167Q 0.18 deleterious(0.03) probably_damaging(0.99) TCGA-MT-A67F-01 19 38796017 38796017 C T YIF1B Nonsense_Mutation p.W307* 0.14 TCGA-MT-A67F-01 19 39923899 39923899 G C RPS16 3'UTR 0.09 TCGA-MT-A67F-01 19 41008819 41008819 G C SPTBN4 Missense_Mutation p.E447D 0.12 deleterious(0) possibly_damaging(0.67) TCGA-MT-A67F-01 19 4529007 4529007 C G PLIN5 Intron 0.08 TCGA-MT-A67F-01 19 4529176 4529176 C T PLIN5 Silent p.L143L 0.12 TCGA-MT-A67F-01 19 46971673 46971673 C T PNMAL1 3'UTR 0.13 TCGA-MT-A67F-01 19 4944242 4944242 C T UHRF1 RNA 0.05 TCGA-MT-A67F-01 19 50247650 50247650 G A TSKS Missense_Mutation p.S400L 0.15 deleterious(0) probably_damaging(0.979) TCGA-MT-A67F-01 19 53343927 53343927 G A ZNF468 3'UTR 0.08 TCGA-MT-A67F-01 19 9065474 9065474 C T MUC16 Missense_Mutation p.M7324I 0.12 unknown(0) TCGA-MT-A67F-01 1 118642244 118642244 G A SPAG17 Missense_Mutation p.L272F 0.11 tolerated(0.4) benign(0.009) TCGA-MT-A67F-01 1 12520312 12520312 G C VPS13D Missense_Mutation p.E4175Q 0.11 possibly_damaging(0.82) TCGA-MT-A67F-01 1 12837451 12837451 C T PRAMEF12 Silent p.L387L 0.11 TCGA-MT-A67F-01 1 12907710 12907710 G A HNRNPCL1 Missense_Mutation p.R145C 0.14 tolerated(0.09) benign(0.009) TCGA-MT-A67F-01 1 144871748 144871748 G T PDE4DIP Silent p.S1738S 0.05 TCGA-MT-A67F-01 1 151377434 151377434 C G POGZ Silent p.L1359L 0.05 TCGA-MT-A67F-01 1 154293656 154293656 G A AQP10 Missense_Mutation p.E9K 0.19 tolerated(1) benign(0) TCGA-MT-A67F-01 1 154942846 154942846 C T SHC1 Missense_Mutation p.D53N 0.12 tolerated(0.25) benign(0) TCGA-MT-A67F-01 1 155058671 155058671 C T EFNA3 Silent p.I192I 0.15 TCGA-MT-A67F-01 1 156641510 156641510 C T NES Missense_Mutation p.E824K 0.10 tolerated(0.07) benign(0.063) TCGA-MT-A67F-01 1 156642171 156642171 C G NES Silent p.V603V 0.09 TCGA-MT-A67F-01 1 156821767 156821767 G A INSRR Missense_Mutation p.S285F 0.16 tolerated(0.06) possibly_damaging(0.452) TCGA-MT-A67F-01 1 157559097 157559097 G A FCRL4 Silent p.T68T 0.13 TCGA-MT-A67F-01 1 167358976 167358976 G A POU2F1 Missense_Mutation p.R322Q 0.17 deleterious(0) unknown(0) TCGA-MT-A67F-01 1 17603150 17603150 G A PADI3 Missense_Mutation p.D482N 0.08 deleterious(0.05) benign(0.02) TCGA-MT-A67F-01 1 180794073 180794073 C G XPR1 Silent p.L316L 0.14 TCGA-MT-A67F-01 1 203144534 203144534 C G MYBPH Silent p.V87V 0.11 TCGA-MT-A67F-01 1 207225657 207225657 G A YOD1 5'Flank 0.09 TCGA-MT-A67F-01 1 209849179 209849179 C T G0S2 Silent p.F50F 0.24 TCGA-MT-A67F-01 1 21072088 21072088 C G HP1BP3 Missense_Mutation p.D439H 0.13 deleterious_low_confidence(0.01) benign(0.308) TCGA-MT-A67F-01 1 212154494 212154494 C T INTS7 Missense_Mutation p.E391K 0.11 deleterious(0) probably_damaging(0.99) TCGA-MT-A67F-01 1 214543025 214543025 G A PTPN14 Nonsense_Mutation p.R1016* 0.16 TCGA-MT-A67F-01 1 215963552 215963552 G C USH2A Missense_Mutation p.S3344C 0.19 probably_damaging(0.91) TCGA-MT-A67F-01 1 227618263 227618263 C T CTD-2090I13.1 RNA 0.13 TCGA-MT-A67F-01 1 236920804 236920804 G C ACTN2 Missense_Mutation p.E725Q 0.15 deleterious(0.01) probably_damaging(1) TCGA-MT-A67F-01 1 23695932 23695932 C A C1orf213 Missense_Mutation p.Q48K 0.11 tolerated_low_confidence(0.2) benign(0.092) TCGA-MT-A67F-01 1 26595006 26595006 G C CEP85 Missense_Mutation p.L458F 0.18 deleterious(0) probably_damaging(0.994) TCGA-MT-A67F-01 1 26596039 26596039 G C CEP85 Missense_Mutation p.R528T 0.09 deleterious(0.02) benign(0.233) TCGA-MT-A67F-01 1 28660984 28660984 G A MED18 Missense_Mutation p.D44N 0.14 deleterious(0) probably_damaging(0.997) TCGA-MT-A67F-01 1 3545080 3545080 C T TPRG1L Silent p.L244L 0.10 TCGA-MT-A67F-01 1 43895410 43895410 G C SZT2 Missense_Mutation p.Q1344H 0.12 tolerated(0.14) probably_damaging(0.933) TCGA-MT-A67F-01 1 62677169 62677169 G A L1TD1 3'UTR 0.21 TCGA-MT-A67F-01 1 65691775 65691775 G A AK4 Missense_Mutation p.G196E 0.11 deleterious(0) probably_damaging(0.983) TCGA-MT-A67F-01 1 79470781 79470781 G A ELTD1 Missense_Mutation p.S49L 0.12 deleterious_low_confidence(0) benign(0.097) TCGA-MT-A67F-01 1 85128181 85128181 C T SSX2IP Missense_Mutation p.D236N 0.11 deleterious(0) possibly_damaging(0.841) TCGA-MT-A67F-01 1 86591748 86591748 C T COL24A1 Missense_Mutation p.E91K 0.12 deleterious(0.04) benign(0.386) TCGA-MT-A67F-01 1 94955491 94955491 C A ABCD3 Missense_Mutation p.P428T 0.18 tolerated(0.06) benign(0.15) TCGA-MT-A67F-01 1 9633463 9633463 G C SLC25A33 Missense_Mutation p.E159Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-MT-A67F-01 20 1456880 1456880 C T SIRPB2 Missense_Mutation p.E321K 0.13 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-MT-A67F-01 20 23029290 23029290 C G THBD Silent p.A284A 0.21 TCGA-MT-A67F-01 20 23431107 23431107 C T CST11 3'UTR 0.12 TCGA-MT-A67F-01 20 2596827 2596827 G C TMC2 Missense_Mutation p.L639F 0.13 deleterious(0) possibly_damaging(0.582) TCGA-MT-A67F-01 20 30954193 30954193 G A ASXL1 Missense_Mutation p.E22K 0.09 deleterious(0) probably_damaging(0.993) TCGA-MT-A67F-01 20 31021384 31021384 G C ASXL1 Silent p.L461L 0.14 TCGA-MT-A67F-01 20 36407619 36407619 G A CTNNBL1 Missense_Mutation p.E305K 0.17 deleterious(0) possibly_damaging(0.808) TCGA-MT-A67F-01 20 37356794 37356794 G A SLC32A1 Missense_Mutation p.D364N 0.08 tolerated(0.29) benign(0.121) TCGA-MT-A67F-01 20 39984669 39984669 C G LPIN3 Missense_Mutation p.Q600E 0.10 deleterious(0.04) possibly_damaging(0.878) TCGA-MT-A67F-01 20 43559286 43559286 C T PABPC1L Silent p.L386L 0.13 TCGA-MT-A67F-01 20 44333211 44333211 G A WFDC13 Missense_Mutation p.E73K 0.15 tolerated(0.56) benign(0.003) TCGA-MT-A67F-01 20 62153098 62153098 G A PPDPF Missense_Mutation p.V71M 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-MT-A67F-01 20 62575962 62575962 G T UCKL1 Silent p.V260V 0.14 TCGA-MT-A67F-01 21 34839412 34839412 C T TMEM50B Nonsense_Mutation p.W39* 0.16 TCGA-MT-A67F-01 21 37652619 37652619 G C DOPEY2 Missense_Mutation p.E2002D 0.13 tolerated(0.85) probably_damaging(0.998) TCGA-MT-A67F-01 21 38529114 38529114 G A TTC3 Silent p.L966L 0.13 TCGA-MT-A67F-01 21 45402220 45402220 G C AGPAT3 Missense_Mutation p.E360Q 0.11 deleterious(0.05) benign(0.418) TCGA-MT-A67F-01 21 46057586 46057586 C T KRTAP10-10 Silent p.C84C 0.14 TCGA-MT-A67F-01 21 46900630 46900630 C T COL18A1 Missense_Mutation p.P670L 0.14 possibly_damaging(0.851) TCGA-MT-A67F-01 21 47423455 47423455 G A COL6A1 Missense_Mutation p.R872Q 0.12 deleterious(0.04) probably_damaging(0.942) TCGA-MT-A67F-01 22 18389604 18389604 G C MICAL3 5'UTR 0.14 TCGA-MT-A67F-01 22 19766861 19766861 C T GNB1L 3'Flank 0.08 TCGA-MT-A67F-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.14 deleterious(0) probably_damaging(0.999) TCGA-MT-A67F-01 22 24034204 24034204 G T RGL4 5'UTR 0.17 TCGA-MT-A67F-01 22 38698965 38698965 C G CSNK1E Silent p.V79V 0.08 TCGA-MT-A67F-01 22 43576835 43576835 G C TTLL12 Missense_Mutation p.F153L 0.15 tolerated(0.26) benign(0.014) TCGA-MT-A67F-01 22 47308042 47308042 C G TBC1D22A Missense_Mutation p.L325V 0.12 deleterious(0) probably_damaging(0.998) TCGA-MT-A67F-01 2 109383480 109383480 G C RANBP2 Missense_Mutation p.R2162T 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-MT-A67F-01 2 109383857 109383857 G A RANBP2 Missense_Mutation p.G2288R 0.10 tolerated(0.94) benign(0.177) TCGA-MT-A67F-01 2 113951501 113951501 G A PSD4 Silent p.G719G 0.10 TCGA-MT-A67F-01 2 133539648 133539648 T C NCKAP5 Missense_Mutation p.D1579G 0.12 tolerated(0.18) benign(0.004) TCGA-MT-A67F-01 2 160136314 160136314 G C WDSUB1 Missense_Mutation p.L181V 0.13 deleterious(0) probably_damaging(0.999) TCGA-MT-A67F-01 2 170344504 170344504 G A BBS5 Missense_Mutation p.R89Q 0.08 deleterious(0.01) probably_damaging(0.968) TCGA-MT-A67F-01 2 179584137 179584137 C T TTN Missense_Mutation p.V7994M 0.07 TCGA-MT-A67F-01 2 17997819 17997819 G A MSGN1 Missense_Mutation p.E12K 0.10 deleterious(0.02) benign(0.062) TCGA-MT-A67F-01 2 202141586 202141586 C T CASP8 Missense_Mutation p.R292W 0.15 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 2 202149679 202149679 C G CASP8 Missense_Mutation p.L374V 0.11 deleterious(0) probably_damaging(0.994) TCGA-MT-A67F-01 2 202483821 202483821 G A ALS2CR11 Silent p.F11F 0.06 TCGA-MT-A67F-01 2 209036779 209036779 G A C2orf80 Silent p.L129L 0.15 TCGA-MT-A67F-01 2 209108191 209108191 C T IDH1 Missense_Mutation p.D220N 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.791) TCGA-MT-A67F-01 2 211473236 211473236 C T CPS1 Missense_Mutation p.H788Y 0.18 deleterious(0.04) benign(0.351) TCGA-MT-A67F-01 2 213921665 213921665 G A IKZF2 Nonsense_Mutation p.Q100* 0.19 TCGA-MT-A67F-01 2 224856626 224856626 C T SERPINE2 Nonsense_Mutation p.W205* 0.12 TCGA-MT-A67F-01 2 230672975 230672975 G A TRIP12 Silent p.L730L 0.10 TCGA-MT-A67F-01 2 231041366 231041366 G A SP110 Intron 0.12 TCGA-MT-A67F-01 2 232573371 232573371 C T PTMA 5'UTR 0.09 TCGA-MT-A67F-01 2 25982412 25982412 G C ASXL2 Nonsense_Mutation p.S293* 0.14 TCGA-MT-A67F-01 2 26427038 26427038 C G HADHA Silent p.L371L 0.06 TCGA-MT-A67F-01 2 27601662 27601662 G T ZNF513 Missense_Mutation p.F157L 0.18 deleterious(0) benign(0.153) TCGA-MT-A67F-01 2 27799764 27799764 C G C2orf16 Missense_Mutation p.P109A 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-MT-A67F-01 2 27799876 27799876 C A C2orf16 Missense_Mutation p.S146Y 0.10 tolerated(0.07) possibly_damaging(0.671) TCGA-MT-A67F-01 2 32750671 32750671 C T BIRC6 Missense_Mutation p.H3966Y 0.20 possibly_damaging(0.643) TCGA-MT-A67F-01 2 47637291 47637291 C T MSH2 Missense_Mutation p.S142L 0.13 tolerated(0.11) benign(0.06) TCGA-MT-A67F-01 2 74274965 74274965 C T TET3 Nonsense_Mutation p.Q506* 0.15 TCGA-MT-A67F-01 2 85577207 85577207 G C RETSAT Missense_Mutation p.S252C 0.13 deleterious(0) probably_damaging(0.96) TCGA-MT-A67F-01 2 86491153 86491153 C T REEP1 Missense_Mutation p.M46I 0.11 deleterious(0.02) benign(0.348) TCGA-MT-A67F-01 2 99858883 99858883 C T LYG2 Missense_Mutation p.D195N 0.07 deleterious(0.02) benign(0.192) TCGA-MT-A67F-01 3 113376843 113376843 G C KIAA2018 Nonsense_Mutation p.S1229* 0.07 TCGA-MT-A67F-01 3 122446757 122446757 C G PARP14 Silent p.L1680L 0.13 TCGA-MT-A67F-01 3 122459417 122459417 C G HSPBAP1 Silent p.G414G 0.11 TCGA-MT-A67F-01 3 124952001 124952001 C T ZNF148 Silent p.L523L 0.13 TCGA-MT-A67F-01 3 129023680 129023680 C T HMCES 3'UTR 0.17 TCGA-MT-A67F-01 3 13367415 13367415 C G NUP210 Missense_Mutation p.W1508C 0.16 deleterious(0) probably_damaging(0.954) TCGA-MT-A67F-01 3 158519957 158519957 G A MFSD1 Missense_Mutation p.E55K 0.08 tolerated(0.07) possibly_damaging(0.801) TCGA-MT-A67F-01 3 167248966 167248966 C G WDR49 Missense_Mutation p.E367Q 0.09 tolerated(0.05) benign(0.056) TCGA-MT-A67F-01 3 196120455 196120455 C G UBXN7 Missense_Mutation p.D109H 0.08 deleterious(0) probably_damaging(0.992) TCGA-MT-A67F-01 3 197410213 197410213 C G KIAA0226 Missense_Mutation p.E649Q 0.14 tolerated(0.28) benign(0.173) TCGA-MT-A67F-01 3 21478518 21478518 C A ZNF385D Missense_Mutation p.C206F 0.14 deleterious(0) probably_damaging(0.99) TCGA-MT-A67F-01 3 25773840 25773840 C T NGLY1 Nonsense_Mutation p.W465* 0.10 TCGA-MT-A67F-01 3 44684657 44684657 G A ZNF197 Missense_Mutation p.E679K 0.08 tolerated(0.36) benign(0.081) TCGA-MT-A67F-01 3 48601761 48601761 C T COL7A1 3'UTR 0.10 TCGA-MT-A67F-01 3 48956416 48956416 G A ARIH2OS Missense_Mutation p.S56L 0.25 tolerated_low_confidence(0.16) benign(0.198) TCGA-MT-A67F-01 3 49201250 49201250 G A CCDC71 Missense_Mutation p.P131L 0.17 deleterious(0.01) probably_damaging(0.945) TCGA-MT-A67F-01 3 63982159 63982159 G C ATXN7 Missense_Mutation p.Q887H 0.08 deleterious(0) probably_damaging(0.952) TCGA-MT-A67F-01 4 106600984 106600984 C G ARHGEF38 3'UTR 0.13 TCGA-MT-A67F-01 4 189012916 189012916 C T TRIML2 Missense_Mutation p.D259N 0.12 tolerated(0.1) possibly_damaging(0.826) TCGA-MT-A67F-01 4 2514856 2514856 G A RNF4 Missense_Mutation p.E141K 0.11 deleterious(0) probably_damaging(0.992) TCGA-MT-A67F-01 4 3138037 3138037 G A HTT Missense_Mutation p.A928T 0.09 possibly_damaging(0.76) TCGA-MT-A67F-01 4 4543550 4543550 C T STX18 Missense_Mutation p.D48N 0.08 tolerated(0.36) benign(0.027) TCGA-MT-A67F-01 4 5981936 5981936 C T C4orf50 Missense_Mutation p.E519K 0.13 deleterious(0.05) possibly_damaging(0.803) TCGA-MT-A67F-01 4 88036053 88036053 C G AFF1 Missense_Mutation p.L690V 0.10 tolerated(0.49) unknown(0) TCGA-MT-A67F-01 4 88535226 88535226 C G DSPP Missense_Mutation p.S471C 0.17 probably_damaging(0.999) TCGA-MT-A67F-01 4 89625374 89625374 C T HERC3 Missense_Mutation p.S928L 0.14 tolerated(0.34) benign(0.403) TCGA-MT-A67F-01 5 131796262 131796262 C T C5orf56 Nonsense_Mutation p.Q33* 0.14 TCGA-MT-A67F-01 5 138657676 138657676 G T MATR3 Silent p.V564V 0.13 TCGA-MT-A67F-01 5 140201951 140201951 A T PCDHA5 Missense_Mutation p.K197N 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-MT-A67F-01 5 140710615 140710615 G A PCDHGA1 Missense_Mutation p.E122K 0.12 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-MT-A67F-01 5 145719521 145719521 C T POU4F3 Silent p.L177L 0.06 TCGA-MT-A67F-01 5 150947413 150947413 G C FAT2 Silent p.L360L 0.14 TCGA-MT-A67F-01 5 160047823 160047823 C G ATP10B Missense_Mutation p.E649D 0.16 tolerated(0.53) benign(0.02) TCGA-MT-A67F-01 5 161118948 161118948 G A GABRA6 Silent p.G276G 0.11 TCGA-MT-A67F-01 5 161300263 161300263 G A GABRA1 Silent p.K132K 0.10 TCGA-MT-A67F-01 5 180048648 180048648 C G FLT4 Silent p.L638L 0.14 TCGA-MT-A67F-01 5 32126511 32126511 C T GOLPH3 Missense_Mutation p.R235H 0.07 deleterious(0) probably_damaging(0.994) TCGA-MT-A67F-01 5 37059151 37059151 G T NIPBL Missense_Mutation p.M2523I 0.14 tolerated(0.12) benign(0.008) TCGA-MT-A67F-01 5 37059248 37059248 C T NIPBL Missense_Mutation p.L2556F 0.10 deleterious(0.01) probably_damaging(0.925) TCGA-MT-A67F-01 5 37059261 37059261 C T NIPBL Missense_Mutation p.S2560F 0.10 deleterious(0) probably_damaging(0.998) TCGA-MT-A67F-01 5 37061005 37061005 G A NIPBL Missense_Mutation p.R2582Q 0.09 deleterious(0) probably_damaging(0.996) TCGA-MT-A67F-01 5 37064094 37064094 G A NIPBL Intron 0.14 TCGA-MT-A67F-01 5 37064095 37064095 G A NIPBL Intron 0.14 TCGA-MT-A67F-01 5 41911179 41911179 G T C5orf51 Silent p.L128L 0.15 TCGA-MT-A67F-01 5 45262058 45262058 C T HCN1 Missense_Mutation p.D880N 0.11 tolerated_low_confidence(0.13) benign(0.023) TCGA-MT-A67F-01 5 54721830 54721830 C T PPAP2A Missense_Mutation p.R197K 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-MT-A67F-01 5 55155385 55155385 G A IL31RA Missense_Mutation p.A38T 0.14 tolerated(0.24) benign(0.037) TCGA-MT-A67F-01 5 66461212 66461212 G A MAST4 Missense_Mutation p.E2069K 0.11 benign(0.041) TCGA-MT-A67F-01 5 74021841 74021841 C G GFM2 Missense_Mutation p.E613Q 0.12 tolerated(0.19) benign(0.024) TCGA-MT-A67F-01 5 9063171 9063171 C T SEMA5A Silent p.T782T 0.09 TCGA-MT-A67F-01 6 10410439 10410439 G A TFAP2A Missense_Mutation p.P59S 0.17 tolerated(0.08) probably_damaging(0.998) TCGA-MT-A67F-01 6 106553064 106553064 C T PRDM1 Silent p.P343P 0.09 TCGA-MT-A67F-01 6 106968853 106968853 C G AIM1 Missense_Mutation p.S849C 0.12 deleterious(0.01) probably_damaging(0.94) TCGA-MT-A67F-01 6 107100173 107100173 C T QRSL1 Missense_Mutation p.S216F 0.09 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 6 10804111 10804111 C T MAK Missense_Mutation p.E169K 0.14 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 6 161470317 161470317 C T MAP3K4 Missense_Mutation p.S338L 0.18 tolerated(0.13) benign(0.002) TCGA-MT-A67F-01 6 26033433 26033433 C G HIST1H2AB Missense_Mutation p.E122Q 0.11 tolerated_low_confidence(0.07) benign(0.116) TCGA-MT-A67F-01 6 30633423 30633423 C T DHX16 Missense_Mutation p.D252N 0.13 deleterious(0.01) unknown(0) TCGA-MT-A67F-01 6 32629838 32629838 G A HLA-DQB1 Silent p.I189I 0.13 TCGA-MT-A67F-01 6 33271721 33271721 G A TAPBP Missense_Mutation p.S449F 0.09 tolerated_low_confidence(0.11) probably_damaging(0.919) TCGA-MT-A67F-01 6 33638303 33638303 C G ITPR3 Silent p.V797V 0.12 TCGA-MT-A67F-01 6 39580967 39580967 C T KIF6 Missense_Mutation p.E213K 0.10 deleterious(0) probably_damaging(0.98) TCGA-MT-A67F-01 6 41774153 41774153 C T USP49 Missense_Mutation p.R190H 0.12 tolerated(0.1) possibly_damaging(0.467) TCGA-MT-A67F-01 6 42980718 42980718 C G MEA1 Missense_Mutation p.D118H 0.09 deleterious(0.01) possibly_damaging(0.797) TCGA-MT-A67F-01 6 43172163 43172163 C T CUL9 Missense_Mutation p.R1409W 0.16 deleterious(0) possibly_damaging(0.766) TCGA-MT-A67F-01 6 56438649 56438649 G C DST Missense_Mutation p.S1732C 0.20 benign(0.036) TCGA-MT-A67F-01 6 82943951 82943951 G A IBTK Nonsense_Mutation p.Q115* 0.13 TCGA-MT-A67F-01 6 84567134 84567134 C G RIPPLY2 3'UTR 0.14 TCGA-MT-A67F-01 6 96985417 96985417 G A UFL1 Missense_Mutation p.D324N 0.15 deleterious(0) possibly_damaging(0.728) TCGA-MT-A67F-01 7 100252740 100252740 C T ACTL6B Missense_Mutation p.E91K 0.20 tolerated(0.09) possibly_damaging(0.477) TCGA-MT-A67F-01 7 1028135 1028135 C T CYP2W1 Intron 0.24 TCGA-MT-A67F-01 7 11468645 11468645 G A THSD7A Missense_Mutation p.R1058C 0.14 deleterious(0) probably_damaging(0.996) TCGA-MT-A67F-01 7 128445932 128445932 C T CCDC136 Nonsense_Mutation p.Q356* 0.16 TCGA-MT-A67F-01 7 135106925 135106925 G A CNOT4 Nonsense_Mutation p.Q118* 0.15 TCGA-MT-A67F-01 7 143091299 143091299 C G EPHA1 Missense_Mutation p.M830I 0.04 deleterious(0) probably_damaging(0.985) TCGA-MT-A67F-01 7 148486916 148486916 G A CUL1 Missense_Mutation p.E558K 0.14 deleterious(0.04) possibly_damaging(0.482) TCGA-MT-A67F-01 7 150748943 150748943 G A ASIC3 Missense_Mutation p.E421K 0.13 deleterious(0) possibly_damaging(0.742) TCGA-MT-A67F-01 7 154767968 154767968 G A PAXIP1 Missense_Mutation p.S171L 0.17 tolerated(0.19) benign(0.226) TCGA-MT-A67F-01 7 1586684 1586684 C T TMEM184A Silent p.A382A 0.05 TCGA-MT-A67F-01 7 20683120 20683120 G T ABCB5 Missense_Mutation p.K181N 0.16 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 7 21757447 21757447 G C DNAH11 Missense_Mutation p.L2353F 0.14 benign(0.307) TCGA-MT-A67F-01 7 31377842 31377842 G A NEUROD6 3'UTR 0.22 TCGA-MT-A67F-01 7 40027853 40027853 G A CDK13 Missense_Mutation p.D623N 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-MT-A67F-01 7 43635615 43635615 G A STK17A Missense_Mutation p.E108K 0.15 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 7 43918731 43918731 G A URGCP Missense_Mutation p.P111S 0.07 tolerated(0.73) probably_damaging(0.999) TCGA-MT-A67F-01 7 43918732 43918732 A C URGCP Silent p.V110V 0.07 TCGA-MT-A67F-01 7 5567507 5567507 C T ACTB Missense_Mutation p.E334K 0.13 deleterious_low_confidence(0.03) benign(0.004) TCGA-MT-A67F-01 7 65435343 65435343 C T GUSB Missense_Mutation p.A468T 0.15 tolerated(0.56) benign(0.001) TCGA-MT-A67F-01 7 74016776 74016776 C G GTF2IRD1 3'UTR 0.11 TCGA-MT-A67F-01 7 75168658 75168658 C T HIP1 Missense_Mutation p.E1016K 0.05 deleterious(0.04) probably_damaging(0.979) TCGA-MT-A67F-01 7 75216085 75216085 C G HIP1 Missense_Mutation p.E151Q 0.25 tolerated(0.08) possibly_damaging(0.588) TCGA-MT-A67F-01 7 99128793 99128793 G C ZKSCAN5 Missense_Mutation p.E481Q 0.03 deleterious(0.02) probably_damaging(0.974) TCGA-MT-A67F-01 8 103279210 103279210 C G UBR5 Missense_Mutation p.D2463H 0.12 deleterious(0.01) possibly_damaging(0.548) TCGA-MT-A67F-01 8 10468885 10468885 G A RP1L1 Missense_Mutation p.S908L 0.15 possibly_damaging(0.507) TCGA-MT-A67F-01 8 10755636 10755636 G C XKR6 Silent p.L584L 0.13 TCGA-MT-A67F-01 8 113353843 113353843 G T CSMD3 Nonsense_Mutation p.S2172* 0.16 TCGA-MT-A67F-01 8 120768299 120768299 G A TAF2 Missense_Mutation p.S942F 0.12 deleterious(0.03) possibly_damaging(0.823) TCGA-MT-A67F-01 8 121528344 121528344 G C MTBP Missense_Mutation p.G720A 0.18 deleterious(0.01) benign(0.285) TCGA-MT-A67F-01 8 140631230 140631230 C T KCNK9 Missense_Mutation p.M132I 0.09 tolerated(1) benign(0.145) TCGA-MT-A67F-01 8 141321381 141321381 G A TRAPPC9 Missense_Mutation p.P628S 0.09 deleterious(0) probably_damaging(0.994) TCGA-MT-A67F-01 8 145111064 145111064 G A OPLAH Silent p.I694I 0.17 TCGA-MT-A67F-01 8 2020512 2020512 C T MYOM2 Missense_Mutation p.T294M 0.16 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 8 23115565 23115565 C T CHMP7 Missense_Mutation p.R271W 0.10 deleterious(0.03) possibly_damaging(0.72) TCGA-MT-A67F-01 8 38853766 38853766 C T TM2D2 Missense_Mutation p.D65N 0.07 tolerated(0.89) benign(0.007) TCGA-MT-A67F-01 8 42958929 42958929 G C POMK Missense_Mutation p.E80Q 0.18 tolerated(0.23) benign(0.007) TCGA-MT-A67F-01 8 82667666 82667666 G A CHMP4C Missense_Mutation p.E144K 0.17 deleterious(0.01) probably_damaging(0.92) TCGA-MT-A67F-01 8 82752106 82752106 G A SNX16 Missense_Mutation p.S39F 0.15 deleterious(0) probably_damaging(0.993) TCGA-MT-A67F-01 8 95906442 95906442 C T CCNE2 Missense_Mutation p.R3K 0.12 deleterious(0) probably_damaging(0.99) TCGA-MT-A67F-01 9 100413653 100413653 G A NCBP1 Missense_Mutation p.E353K 0.11 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 9 108456874 108456874 C A TMEM38B 5'UTR 0.23 TCGA-MT-A67F-01 9 128321964 128321964 C T MAPKAP1 Missense_Mutation p.E266K 0.11 deleterious(0.01) possibly_damaging(0.698) TCGA-MT-A67F-01 9 130830799 130830799 C T SLC25A25 Silent p.V67V 0.10 TCGA-MT-A67F-01 9 19058623 19058623 G A HAUS6 Silent p.F714F 0.22 TCGA-MT-A67F-01 9 21512171 21512171 C G MIR31 RNA 0.14 TCGA-MT-A67F-01 9 21512181 21512181 C G MIR31 RNA 0.14 TCGA-MT-A67F-01 9 22029493 22029493 G A CDKN2B-AS1 RNA 0.06 TCGA-MT-A67F-01 9 32407278 32407278 C G ACO1 Missense_Mutation p.I39M 0.12 tolerated(0.06) benign(0.219) TCGA-MT-A67F-01 9 32631191 32631191 C T TAF1L Missense_Mutation p.E1463K 0.33 tolerated(0.09) benign(0.216) TCGA-MT-A67F-01 9 33056843 33056843 C G SMU1 Missense_Mutation p.Q329H 0.06 tolerated(0.72) benign(0.001) TCGA-MT-A67F-01 9 35450407 35450407 G A ATP8B5P RNA 0.33 TCGA-MT-A67F-01 9 35957488 35957488 G A OR2S2 Missense_Mutation p.T203M 0.29 deleterious(0) possibly_damaging(0.87) TCGA-MT-A67F-01 9 84532182 84532182 G C SPATA31D5P RNA 0.07 TCGA-MT-A67F-01 9 85863132 85863132 C T FRMD3 Missense_Mutation p.E499K 0.13 tolerated(0.29) probably_damaging(0.99) TCGA-MT-A67F-01 9 94830337 94830337 C G SPTLC1 Missense_Mutation p.K157N 0.25 tolerated(0.52) benign(0.005) TCGA-MT-A67F-01 9 94830360 94830360 C G SPTLC1 Missense_Mutation p.D150H 0.12 deleterious(0.01) possibly_damaging(0.642) TCGA-MT-A67F-01 X 101909130 101909130 C T GPRASP1 Nonsense_Mutation p.Q97* 0.07 TCGA-MT-A67F-01 X 102754770 102754770 C G RAB40A 3'UTR 0.14 TCGA-MT-A67F-01 X 10463668 10463668 G A MID1 Nonsense_Mutation p.Q274* 0.11 TCGA-MT-A67F-01 X 106882528 106882528 G A PRPS1 Silent p.V42V 0.17 TCGA-MT-A67F-01 X 11308547 11308547 C T ARHGAP6 Intron 0.16 TCGA-MT-A67F-01 X 119760659 119760659 C G C1GALT1C1 Missense_Mutation p.M121I 0.15 tolerated(0.19) benign(0.003) TCGA-MT-A67F-01 X 128642066 128642066 A C SMARCA1 Missense_Mutation p.F273C 0.15 deleterious(0) probably_damaging(0.95) TCGA-MT-A67F-01 X 12904323 12904323 C G TLR7 Silent p.L232L 0.14 TCGA-MT-A67F-01 X 131351188 131351188 C T RAP2C Missense_Mutation p.E37K 0.18 deleterious(0) probably_damaging(1) TCGA-MT-A67F-01 X 142967668 142967668 G C UBE2NL 3'UTR 0.14 TCGA-MT-A67F-01 X 152818725 152818725 G A ATP2B3 Missense_Mutation p.E686K 0.12 deleterious(0) probably_damaging(0.973) TCGA-MT-A67F-01 X 153690647 153690647 G A PLXNA3 Silent p.K438K 0.06 TCGA-MT-A67F-01 X 1584364 1584364 C T P2RY8 3'UTR 0.13 TCGA-MT-A67F-01 X 22291314 22291314 G A ZNF645 Missense_Mutation p.R69Q 0.15 deleterious(0.04) benign(0.012) TCGA-MT-A67F-01 X 31279123 31279123 G A DMD Nonsense_Mutation p.Q3079* 0.16 TCGA-MT-A67F-01 X 36162701 36162701 G T CHDC2 Missense_Mutation p.K428N 0.12 tolerated_low_confidence(0.08) benign(0.004) TCGA-MT-A67F-01 X 41027443 41027443 G T USP9X Nonsense_Mutation p.E870* 0.06 TCGA-MT-A67F-01 X 48117231 48117231 G A SSX1 Missense_Mutation p.M40I 0.07 deleterious(0.02) benign(0.387) TCGA-MT-A67F-01 X 53563110 53563110 C T HUWE1 Missense_Mutation p.E4177K 0.17 unknown(0) TCGA-MT-A67F-01 X 70357476 70357476 G C MED12 Missense_Mutation p.Q1939H 0.11 probably_damaging(0.994) TCGA-MT-A67G-01 10 82280501 82280501 C T TSPAN14 3'UTR 0.27 TCGA-MT-A67G-01 10 88469757 88469757 A C LDB3 Missense_Mutation p.K399T 0.17 deleterious(0.05) benign(0.005) TCGA-MT-A67G-01 10 92509196 92509196 A G HTR7 Missense_Mutation p.L232S 0.13 tolerated(0.15) probably_damaging(0.999) TCGA-MT-A67G-01 11 113857526 113857526 C T HTR3A Missense_Mutation p.A337V 0.26 tolerated_low_confidence(0.42) benign(0) TCGA-MT-A67G-01 11 123601252 123601252 C A ZNF202 Missense_Mutation p.E115D 0.04 deleterious(0) probably_damaging(0.997) TCGA-MT-A67G-01 11 33772198 33772198 G A FBXO3 Silent p.H273H 0.09 TCGA-MT-A67G-01 11 65304213 65304213 C T SCYL1 Missense_Mutation p.T603M 0.16 tolerated(0.14) benign(0.004) TCGA-MT-A67G-01 11 68153810 68153810 C T LRP5 Missense_Mutation p.R348W 0.05 deleterious(0) probably_damaging(0.998) TCGA-MT-A67G-01 12 104682730 104682730 G A TXNRD1 Missense_Mutation p.G109E 0.27 tolerated(1) benign(0.001) TCGA-MT-A67G-01 12 18891249 18891249 G A CAPZA3 Missense_Mutation p.R16H 0.08 tolerated(0.57) benign(0.002) TCGA-MT-A67G-01 12 31249813 31249813 G A DDX11 Missense_Mutation p.E551K 0.14 tolerated(0.17) benign(0.374) TCGA-MT-A67G-01 12 50367302 50367302 G T AQP6 Missense_Mutation p.A116S 0.11 tolerated(0.06) benign(0.128) TCGA-MT-A67G-01 12 62960205 62960205 A G MON2 Missense_Mutation p.E1433G 0.11 tolerated(0.55) benign(0.003) TCGA-MT-A67G-01 13 103705000 103705000 T G SLC10A2 Missense_Mutation p.K185N 0.10 deleterious(0) possibly_damaging(0.672) TCGA-MT-A67G-01 13 37453794 37453794 G A SMAD9 Silent p.F11F 0.10 TCGA-MT-A67G-01 14 45711965 45711965 G A MIS18BP1 Silent p.Y219Y 0.09 TCGA-MT-A67G-01 14 95053760 95053760 C T SERPINA5 Missense_Mutation p.R21C 0.10 deleterious(0) probably_damaging(0.941) TCGA-MT-A67G-01 15 45555359 45555359 G A SLC28A2 Silent p.S121S 0.10 TCGA-MT-A67G-01 15 53815463 53815463 C T WDR72 Missense_Mutation p.V1069M 0.12 tolerated(0.07) benign(0.086) TCGA-MT-A67G-01 15 56961070 56961070 C T ZNF280D Missense_Mutation p.R499Q 0.16 deleterious(0) possibly_damaging(0.809) TCGA-MT-A67G-01 15 79750301 79750301 C T KIAA1024 Silent p.G604G 0.06 TCGA-MT-A67G-01 15 89876415 89876415 C T POLG Missense_Mutation p.E191K 0.27 tolerated(0.51) benign(0.016) TCGA-MT-A67G-01 16 11785384 11785384 C T TXNDC11 Silent p.E554E 0.11 TCGA-MT-A67G-01 16 30794517 30794517 C G ZNF629 Missense_Mutation p.V378L 0.13 tolerated(0.09) probably_damaging(0.997) TCGA-MT-A67G-01 17 16336997 16336997 A G TRPV2 Missense_Mutation p.E700G 0.39 tolerated(0.12) benign(0.423) TCGA-MT-A67G-01 17 18137344 18137344 G A LLGL1 Missense_Mutation p.R190H 0.26 deleterious(0.02) probably_damaging(0.915) TCGA-MT-A67G-01 17 37872674 37872674 G A ERBB2 Missense_Mutation p.R545Q 0.24 deleterious(0) benign(0.116) TCGA-MT-A67G-01 17 47123652 47123652 G A IGF2BP1 Missense_Mutation p.E520K 0.18 tolerated(0.05) probably_damaging(1) TCGA-MT-A67G-01 17 81052168 81052168 G A METRNL Missense_Mutation p.V262M 0.09 deleterious(0) probably_damaging(0.996) TCGA-MT-A67G-01 18 13682099 13682099 C T FAM210A 5'UTR 0.19 TCGA-MT-A67G-01 19 1043229 1043229 G A ABCA7 Missense_Mutation p.A257T 0.05 tolerated(0.63) benign(0.005) TCGA-MT-A67G-01 19 14578417 14578417 C T PKN1 Missense_Mutation p.S597L 0.11 tolerated(0.34) benign(0.003) TCGA-MT-A67G-01 19 20133875 20133875 C T ZNF682 Missense_Mutation p.R55H 0.21 deleterious(0.03) benign(0) TCGA-MT-A67G-01 19 603652 603652 C G HCN2 Missense_Mutation p.F247L 0.33 deleterious(0) benign(0.326) TCGA-MT-A67G-01 19 6381016 6381016 G A GTF2F1 Missense_Mutation p.S377L 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-MT-A67G-01 1 116666711 116666711 G A MAB21L3 Missense_Mutation p.V72I 0.19 tolerated(0.81) benign(0.03) TCGA-MT-A67G-01 1 158946606 158946606 G A PYHIN1 3'UTR 0.09 TCGA-MT-A67G-01 1 161681058 161681058 G A FCRLA Missense_Mutation p.R121H 0.09 tolerated(0.22) benign(0.103) TCGA-MT-A67G-01 1 169890826 169890826 A G KIFAP3 Silent p.Y790Y 0.30 TCGA-MT-A67G-01 1 210536201 210536201 G C HHAT Missense_Mutation p.E34Q 0.27 deleterious(0.01) unknown(0) TCGA-MT-A67G-01 1 245862231 245862231 C T KIF26B Missense_Mutation p.R2024C 0.09 deleterious(0.02) unknown(0) TCGA-MT-A67G-01 1 54562150 54562150 G A TCEANC2 3'UTR 0.21 TCGA-MT-A67G-01 20 13830922 13830922 G A SEL1L2 Missense_Mutation p.T508M 0.10 deleterious_low_confidence(0) benign(0.367) TCGA-MT-A67G-01 20 23029299 23029299 G A THBD Silent p.T281T 0.14 TCGA-MT-A67G-01 20 25457599 25457599 C T NINL Silent p.S776S 0.15 TCGA-MT-A67G-01 20 31386317 31386317 C T DNMT3B Silent p.A514A 0.07 TCGA-MT-A67G-01 20 35177602 35177602 G A MYL9 Missense_Mutation p.V157M 0.08 tolerated(0.09) benign(0.001) TCGA-MT-A67G-01 20 61981904 61981904 C T CHRNA4 Missense_Mutation p.V287I 0.10 deleterious(0) probably_damaging(0.991) TCGA-MT-A67G-01 22 19960653 19960653 G A ARVCF Silent p.L809L 0.17 TCGA-MT-A67G-01 2 128471226 128471226 C T WDR33 Missense_Mutation p.R1080H 0.12 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-MT-A67G-01 2 173431653 173431653 A G PDK1 Missense_Mutation p.E254G 0.18 deleterious(0.03) possibly_damaging(0.546) TCGA-MT-A67G-01 2 179391793 179391793 C T TTN Silent p.G35974G 0.07 TCGA-MT-A67G-01 3 108818259 108818259 C T MORC1 Silent p.T123T 0.07 TCGA-MT-A67G-01 3 123452940 123452940 C T MYLK Silent p.Q301Q 0.10 TCGA-MT-A67G-01 3 50293639 50293639 G A GNAI2 Silent p.L160L 0.12 TCGA-MT-A67G-01 3 51429255 51429255 T A RBM15B Missense_Mutation p.L142H 0.33 tolerated(0.13) benign(0.354) TCGA-MT-A67G-01 3 52380763 52380763 C T DNAH1 Silent p.D644D 0.11 TCGA-MT-A67G-01 4 148453782 148453782 G A EDNRA Missense_Mutation p.V225I 0.14 deleterious(0.01) benign(0.265) TCGA-MT-A67G-01 4 2252912 2252912 C T MXD4 Missense_Mutation p.R124H 0.22 deleterious(0) benign(0.021) TCGA-MT-A67G-01 4 40776906 40776906 C T NSUN7 Missense_Mutation p.S255F 0.12 deleterious(0) possibly_damaging(0.635) TCGA-MT-A67G-01 4 72400023 72400023 C T SLC4A4 Missense_Mutation p.P787L 0.15 deleterious(0) probably_damaging(1) TCGA-MT-A67G-01 4 76692048 76692048 T C USO1 Missense_Mutation p.V159A 0.10 deleterious(0) possibly_damaging(0.757) TCGA-MT-A67G-01 4 88986993 88986993 G A PKD2 Missense_Mutation p.E774K 0.15 deleterious(0) probably_damaging(0.938) TCGA-MT-A67G-01 5 140559775 140559775 G T PCDHB8 Silent p.A720A 0.16 TCGA-MT-A67G-01 5 57790546 57790546 C T GAPT Silent p.F61F 0.10 TCGA-MT-A67G-01 7 119915572 119915572 C T KCND2 Missense_Mutation p.R296W 0.10 deleterious(0) probably_damaging(1) TCGA-MT-A67G-01 7 129083914 129083914 C T STRIP2 Silent p.C83C 0.14 TCGA-MT-A67G-01 7 65579812 65579812 C T CRCP 5'UTR 0.09 TCGA-MT-A67G-01 7 87516189 87516189 G A DBF4 Missense_Mutation p.E144K 0.12 tolerated(0.09) benign(0.157) TCGA-MT-A67G-01 8 28360436 28360436 G T FZD3 5'UTR 0.21 TCGA-MT-A67G-01 8 28360447 28360447 G A FZD3 5'UTR 0.21 TCGA-MT-A67G-01 9 116246482 116246482 G A RGS3 Missense_Mutation p.R197K 0.06 tolerated(0.77) benign(0.017) TCGA-MT-A67G-01 9 27220087 27220087 C T TEK Silent p.Y1048Y 0.04 TCGA-MT-A67G-01 X 101623506 101623506 G A NXF2B Missense_Mutation p.R224W 0.13 deleterious(0) possibly_damaging(0.883) TCGA-MT-A67G-01 X 149898676 149898676 C G MTMR1 Missense_Mutation p.N209K 0.30 deleterious(0.02) benign(0.054) TCGA-MT-A67G-01 X 38013775 38013775 G A SRPX Missense_Mutation p.P384L 0.21 deleterious(0) probably_damaging(1) TCGA-MT-A67G-01 X 44913196 44913196 G A KDM6A Missense_Mutation p.G291R 0.12 deleterious(0) probably_damaging(1) TCGA-MT-A7BN-01 10 26505684 26505685 - GCAGCTCGCCC GAD2 5'UTR 0.37 TCGA-MT-A7BN-01 10 89720726 89720729 GGAA - PTEN Frame_Shift_Del p.G293Vfs*13 0.41 TCGA-MT-A7BN-01 11 107312239 107312239 G T CWF19L2 Missense_Mutation p.A187E 0.55 tolerated(0.39) benign(0.1) TCGA-MT-A7BN-01 11 110333129 110333129 T C FDX1 Silent p.T164T 0.35 TCGA-MT-A7BN-01 11 20125215 20125215 A C NAV2 Missense_Mutation p.T2256P 0.29 deleterious(0) probably_damaging(0.995) TCGA-MT-A7BN-01 12 104336574 104336574 G A HSP90B1 Silent p.E548E 0.17 TCGA-MT-A7BN-01 12 10961888 10961888 C A TAS2R9 Missense_Mutation p.V263L 0.19 tolerated(0.24) benign(0.117) TCGA-MT-A7BN-01 12 112607337 112607337 G A HECTD4 Missense_Mutation p.R3914C 0.19 probably_damaging(0.995) TCGA-MT-A7BN-01 12 15038675 15038675 A C MGP Silent p.T17T 0.54 TCGA-MT-A7BN-01 12 41900421 41900421 C T PDZRN4 Missense_Mutation p.T336M 0.49 deleterious(0) probably_damaging(0.999) TCGA-MT-A7BN-01 12 53589909 53589909 G A ITGB7 Silent p.D297D 0.19 TCGA-MT-A7BN-01 12 54689025 54689025 G A NFE2 Missense_Mutation p.P3L 0.36 deleterious(0) probably_damaging(0.998) TCGA-MT-A7BN-01 12 7848318 7848318 G A GDF3 Missense_Mutation p.R3C 0.27 deleterious_low_confidence(0.01) benign(0.183) TCGA-MT-A7BN-01 12 88584341 88584341 C T TMTC3 Nonsense_Mutation p.Q550* 0.21 TCGA-MT-A7BN-01 12 96617528 96617528 G A ELK3 Missense_Mutation p.A62T 0.17 deleterious(0) probably_damaging(1) TCGA-MT-A7BN-01 15 34648291 34648291 T G NUTM1 Silent p.G666G 0.15 TCGA-MT-A7BN-01 15 45392063 45392063 T A DUOX2 Missense_Mutation p.D1071V 0.25 deleterious(0) benign(0.115) TCGA-MT-A7BN-01 15 52427914 52427914 C T GNB5 Missense_Mutation p.D223N 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-MT-A7BN-01 16 112635 112635 G A RHBDF1 Missense_Mutation p.S285L 0.18 tolerated(0.12) probably_damaging(0.941) TCGA-MT-A7BN-01 16 29994473 29994473 C T TAOK2 Silent p.S360S 0.28 TCGA-MT-A7BN-01 17 29528441 29528441 C T NF1 Nonsense_Mutation p.Q400* 0.43 TCGA-MT-A7BN-01 17 33513437 33513437 G C UNC45B Missense_Mutation p.K885N 0.45 deleterious(0.01) possibly_damaging(0.811) TCGA-MT-A7BN-01 17 66265127 66265127 A C SLC16A6 3'UTR 0.17 TCGA-MT-A7BN-01 17 679148 679148 G A GLOD4 Silent p.L91L 0.18 TCGA-MT-A7BN-01 17 73096475 73096475 C T SLC16A5 Silent p.C239C 0.60 TCGA-MT-A7BN-01 17 7346396 7346396 G A FGF11 Silent p.V203V 0.48 TCGA-MT-A7BN-01 17 7578207 7578207 A - TP53 Frame_Shift_Del p.H214Qfs*33 0.36 TCGA-MT-A7BN-01 17 80044961 80044961 C T FASN Missense_Mutation p.R1131H 0.16 tolerated(0.09) benign(0.001) TCGA-MT-A7BN-01 18 72343909 72343909 G A ZNF407 Missense_Mutation p.A312T 0.49 tolerated(0.19) benign(0.004) TCGA-MT-A7BN-01 19 13476249 13476249 C T CACNA1A Silent p.A222A 0.30 TCGA-MT-A7BN-01 19 33392179 33392179 C T CEP89 Missense_Mutation p.E569K 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-MT-A7BN-01 19 33702228 33702228 C T SLC7A10 Missense_Mutation p.G307R 0.09 deleterious(0) probably_damaging(0.998) TCGA-MT-A7BN-01 19 36508625 36508625 G A CLIP3 Silent p.V461V 0.16 TCGA-MT-A7BN-01 19 3964910 3964910 G A DAPK3 Missense_Mutation p.R48C 0.18 deleterious(0) probably_damaging(0.977) TCGA-MT-A7BN-01 19 41512851 41512851 G A CYP2B6 Missense_Mutation p.A176T 0.45 deleterious(0.04) probably_damaging(0.971) TCGA-MT-A7BN-01 19 43243121 43243121 A T PSG3 Missense_Mutation p.L62H 0.18 deleterious(0.03) probably_damaging(0.955) TCGA-MT-A7BN-01 19 55435237 55435237 C T NLRP7 Silent p.L995L 0.12 TCGA-MT-A7BN-01 19 55718097 55718097 G A PTPRH Silent p.D104D 0.17 TCGA-MT-A7BN-01 19 6854107 6854107 C T VAV1 Missense_Mutation p.R828W 0.28 deleterious(0) probably_damaging(0.977) TCGA-MT-A7BN-01 1 114189210 114189210 A G MAGI3 Missense_Mutation p.K701E 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-MT-A7BN-01 1 115829175 115829175 C A NGF Missense_Mutation p.R81L 0.15 deleterious(0) benign(0.307) TCGA-MT-A7BN-01 1 144916738 144916739 - CT PDE4DIP Frame_Shift_Ins p.S539Rfs*4 0.16 TCGA-MT-A7BN-01 1 156703202 156703202 G A RRNAD1 Missense_Mutation p.G176R 0.12 tolerated(0.14) possibly_damaging(0.887) TCGA-MT-A7BN-01 1 156814525 156814525 C T INSRR Missense_Mutation p.E850K 0.05 deleterious(0) probably_damaging(0.988) TCGA-MT-A7BN-01 1 238048505 238048505 A T ZP4 Missense_Mutation p.F424Y 0.09 deleterious(0) probably_damaging(0.961) TCGA-MT-A7BN-01 1 248487598 248487598 G T OR2M7 Silent p.S91S 0.12 TCGA-MT-A7BN-01 20 58467325 58467325 T C SYCP2 Missense_Mutation p.Q695R 0.15 tolerated(0.15) benign(0.024) TCGA-MT-A7BN-01 22 18304795 18304795 C A MICAL3 Splice_Site p.X1150_splice 0.57 TCGA-MT-A7BN-01 22 31597481 31597481 C G RNF185 Intron 0.26 TCGA-MT-A7BN-01 22 45244837 45244837 C T ARHGAP8 Silent p.Y380Y 0.57 TCGA-MT-A7BN-01 2 130738117 130738117 G C RAB6C Missense_Mutation p.R143S 0.16 tolerated_low_confidence(0.16) benign(0.043) TCGA-MT-A7BN-01 2 167168039 167168039 C T SCN9A Silent p.E76E 0.09 TCGA-MT-A7BN-01 2 179434084 179434084 G T TTN Missense_Mutation p.A25592D 0.18 TCGA-MT-A7BN-01 2 183817613 183817613 T A NCKAP1 Missense_Mutation p.H810L 0.49 tolerated(0.72) benign(0.002) TCGA-MT-A7BN-01 2 26486314 26486314 G T HADHB Missense_Mutation p.G59V 0.23 deleterious(0) probably_damaging(0.996) TCGA-MT-A7BN-01 3 44670593 44670593 A C ZNF197 5'UTR 0.27 TCGA-MT-A7BN-01 4 4864431 4864431 G A MSX1 Missense_Mutation p.R158Q 0.25 tolerated(0.21) benign(0.18) TCGA-MT-A7BN-01 4 69100236 69100236 C T TMPRSS11B Missense_Mutation p.M138I 0.28 tolerated(0.25) benign(0.002) TCGA-MT-A7BN-01 4 89311908 89311908 A G HERC6 Missense_Mutation p.I181V 0.15 tolerated(0.55) possibly_damaging(0.855) TCGA-MT-A7BN-01 6 109286180 109286180 C G ARMC2 Intron 0.12 TCGA-MT-A7BN-01 6 35262323 35262323 A C ZNF76 Missense_Mutation p.N529H 0.23 tolerated(0.05) benign(0.012) TCGA-MT-A7BN-01 7 120591213 120591213 G A ING3 Intron 0.12 TCGA-MT-A7BN-01 7 127957756 127957756 G A RBM28 Nonsense_Mutation p.R582* 0.14 TCGA-MT-A7BN-01 7 141708491 141708491 C A MGAM Missense_Mutation p.Q105K 0.30 tolerated(0.26) benign(0.002) TCGA-MT-A7BN-01 7 99802373 99802373 C T STAG3 Missense_Mutation p.R976C 0.24 deleterious(0) probably_damaging(1) TCGA-MT-A7BN-01 7 99998602 99998602 A G ZCWPW1 3'UTR 0.33 TCGA-MT-A7BN-01 8 110412313 110412313 G A PKHD1L1 Missense_Mutation p.G341S 0.43 deleterious(0) probably_damaging(0.997) TCGA-MT-A7BN-01 8 125506161 125506161 G C TATDN1 Nonsense_Mutation p.S235* 0.31 TCGA-MT-A7BN-01 8 98900459 98900459 C T MATN2 Missense_Mutation p.T44M 0.22 tolerated(0.14) benign(0.028) TCGA-MT-A7BN-01 9 79319818 79319818 G A PRUNE2 Silent p.L2458L 0.16 TCGA-MT-A7BN-01 9 84531821 84531821 G A SPATA31D5P RNA 0.24 TCGA-MT-A7BN-01 9 91657091 91657091 C T SHC3 Missense_Mutation p.D404N 0.17 deleterious(0.03) probably_damaging(1) TCGA-MT-A7BN-01 X 102968788 102968788 C A TMEM31 Silent p.I123I 0.71 TCGA-MT-A7BN-01 X 130409574 130409574 C T IGSF1 Missense_Mutation p.G1026E 0.64 deleterious(0) probably_damaging(1) TCGA-MT-A7BN-01 X 14877435 14877435 G T FANCB Missense_Mutation p.L325I 0.52 tolerated(0.57) benign(0.004) TCGA-MT-A7BN-01 X 151303875 151303875 T C MAGEA10 Missense_Mutation p.E73G 0.34 tolerated(0.05) benign(0.082) TCGA-MT-A7BN-01 X 2828811 2828811 C G ARSD Missense_Mutation p.D342H 0.39 deleterious(0.05) benign(0.057) TCGA-MT-A7BN-01 X 50167323 50167323 A G DGKK RNA 0.44 TCGA-MZ-A5BI-01 10 103826135 103826135 G C HPS6 Missense_Mutation p.G302R 0.20 tolerated(0.3) probably_damaging(0.926) TCGA-MZ-A5BI-01 10 103826228 103826228 G C HPS6 Missense_Mutation p.E333Q 0.15 tolerated(0.38) benign(0.243) TCGA-MZ-A5BI-01 10 118434212 118434212 T C HSPA12A 3'UTR 0.23 TCGA-MZ-A5BI-01 10 134594354 134594354 C T INPP5A Missense_Mutation p.S364L 0.11 tolerated(0.24) possibly_damaging(0.857) TCGA-MZ-A5BI-01 10 28283901 28283901 A T ARMC4 Silent p.L57L 0.06 TCGA-MZ-A5BI-01 10 7325965 7325965 C - SFMBT2 Frame_Shift_Del p.D225Tfs*38 0.10 TCGA-MZ-A5BI-01 11 122817235 122817235 C T C11orf63 Missense_Mutation p.T555M 0.26 deleterious(0.01) benign(0.004) TCGA-MZ-A5BI-01 11 18254043 18254043 C T SAA4 Missense_Mutation p.M43I 0.30 deleterious(0.01) benign(0.016) TCGA-MZ-A5BI-01 12 100452471 100452471 T A UHRF1BP1L Missense_Mutation p.I862F 0.14 tolerated(0.05) benign(0.003) TCGA-MZ-A5BI-01 12 49525162 49525162 G C TUBA1B 5'UTR 0.25 TCGA-MZ-A5BI-01 14 20852060 20852060 G A TEP1 Silent p.A1184A 0.21 TCGA-MZ-A5BI-01 14 35873703 35873703 G A NFKBIA Nonsense_Mutation p.Q50* 0.24 TCGA-MZ-A5BI-01 14 75544310 75544310 G A ZC2HC1C 3'UTR 0.29 TCGA-MZ-A5BI-01 15 101434212 101434212 T G ALDH1A3 Missense_Mutation p.C197W 0.27 deleterious(0) probably_damaging(1) TCGA-MZ-A5BI-01 16 31092135 31092135 C T ZNF646 Missense_Mutation p.P1497L 0.25 deleterious(0.05) benign(0.158) TCGA-MZ-A5BI-01 17 80588876 80588876 G A WDR45B Silent p.G55G 0.10 TCGA-MZ-A5BI-01 18 22805127 22805127 C T ZNF521 Missense_Mutation p.V919M 0.06 tolerated(0.22) benign(0.032) TCGA-MZ-A5BI-01 18 52258570 52258570 G A DYNAP Silent p.P45P 0.21 TCGA-MZ-A5BI-01 19 12251003 12251003 G A ZNF20 5'UTR 0.28 TCGA-MZ-A5BI-01 19 14268118 14268118 T C LPHN1 Missense_Mutation p.N902S 0.09 tolerated(0.88) benign(0.189) TCGA-MZ-A5BI-01 19 37006184 37006184 T C ZNF260 5'UTR 0.18 TCGA-MZ-A5BI-01 19 47761617 47761617 G A CCDC9 5'UTR 0.09 TCGA-MZ-A5BI-01 19 54416165 54416165 C T CACNG7 Missense_Mutation p.A27V 0.25 deleterious(0) probably_damaging(0.986) TCGA-MZ-A5BI-01 19 9764389 9764389 G C ZNF562 Missense_Mutation p.Q173E 0.25 tolerated(1) benign(0.08) TCGA-MZ-A5BI-01 1 148932785 148932785 G C RP11-14N7.2 Splice_Site 0.05 TCGA-MZ-A5BI-01 1 153066065 153066065 G A SPRR2E Missense_Mutation p.P55S 0.21 deleterious_low_confidence(0) unknown(0) TCGA-MZ-A5BI-01 1 158435707 158435707 G A OR10K1 Missense_Mutation p.G119D 0.05 deleterious(0) probably_damaging(1) TCGA-MZ-A5BI-01 1 162343811 162343811 G A C1orf111 3'UTR 0.08 TCGA-MZ-A5BI-01 1 206592730 206592730 C A SRGAP2 Silent p.R397R 0.10 TCGA-MZ-A5BI-01 1 52263977 52263977 C G NRD1 Missense_Mutation p.E918Q 0.25 tolerated(0.57) benign(0.102) TCGA-MZ-A5BI-01 20 23016391 23016391 G A SSTR4 Missense_Mutation p.V91I 0.04 tolerated(0.99) benign(0.005) TCGA-MZ-A5BI-01 20 30797941 30797941 C T POFUT1 Silent p.T64T 0.42 TCGA-MZ-A5BI-01 22 20786135 20786135 T C SCARF2 Splice_Site p.X78_splice 0.25 TCGA-MZ-A5BI-01 2 228131136 228131136 A T COL4A3 Missense_Mutation p.D440V 0.09 benign(0.312) TCGA-MZ-A5BI-01 2 51255256 51255256 G A NRXN1 Silent p.S52S 0.28 TCGA-MZ-A5BI-01 3 129196910 129196910 G A IFT122 Missense_Mutation p.R451Q 0.08 deleterious(0) probably_damaging(0.989) TCGA-MZ-A5BI-01 3 169500368 169500368 G T MYNN Missense_Mutation p.D446Y 0.06 deleterious(0.01) possibly_damaging(0.797) TCGA-MZ-A5BI-01 3 175293954 175293954 C T NAALADL2 Silent p.Y593Y 0.14 TCGA-MZ-A5BI-01 3 49394926 49394951 CACCAGGAACTTCTCAAAGTTCCAGG - GPX1 Frame_Shift_Del p.A161Gfs*? 0.23 TCGA-MZ-A5BI-01 4 10083067 10083067 C T WDR1 Missense_Mutation p.G400R 0.09 tolerated(0.26) benign(0.379) TCGA-MZ-A5BI-01 4 156135661 156135661 G A NPY2R Silent p.S190S 0.18 TCGA-MZ-A5BI-01 4 41937526 41937531 CCCCAA TCCCCAG TMEM33 Frame_Shift_Ins p.P9Sfs*14 0.14 TCGA-MZ-A5BI-01 5 180219055 180219079 GGGCGTATGCAGGCCCGCCCCTGCC - MGAT1 Frame_Shift_Del p.R298Lfs*7 0.52 TCGA-MZ-A5BI-01 6 146262872 146262872 G A SHPRH Missense_Mutation p.R793C 0.11 deleterious(0) possibly_damaging(0.544) TCGA-MZ-A5BI-01 7 103230055 103230055 G A RELN Missense_Mutation p.S1378F 0.37 deleterious(0.01) probably_damaging(0.957) TCGA-MZ-A5BI-01 8 124693564 124693564 C T ANXA13 Silent p.E330E 0.20 TCGA-MZ-A5BI-01 8 125575169 125575169 A C MTSS1 Missense_Mutation p.S297A 0.27 tolerated(0.13) possibly_damaging(0.816) TCGA-MZ-A5BI-01 9 136401741 136401741 G T ADAMTSL2 5'UTR 0.12 TCGA-MZ-A5BI-01 9 86518838 86518838 G C KIF27 Missense_Mutation p.Q199E 0.23 deleterious(0) probably_damaging(0.987) TCGA-MZ-A5BI-01 X 74376044 74376044 G A ABCB7 Missense_Mutation p.R22W 0.45 deleterious_low_confidence(0) possibly_damaging(0.78) TCGA-MZ-A6I9-01 10 12277092 12277092 C T CDC123 Nonsense_Mutation p.R179* 0.25 TCGA-MZ-A6I9-01 10 13653622 13653622 G C PRPF18 Missense_Mutation p.G173A 0.21 tolerated(1) benign(0.014) TCGA-MZ-A6I9-01 10 16996429 16996429 G C CUBN Missense_Mutation p.P1605R 0.16 tolerated(0.32) benign(0.021) TCGA-MZ-A6I9-01 10 89265179 89265179 C T MINPP1 Silent p.F169F 0.10 TCGA-MZ-A6I9-01 11 36596713 36596713 A G RAG1 Missense_Mutation p.E620G 0.28 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-MZ-A6I9-01 11 93104354 93104354 G C CCDC67 Missense_Mutation p.A233P 0.30 deleterious(0.03) probably_damaging(0.992) TCGA-MZ-A6I9-01 12 124421612 124421612 G A CCDC92 Missense_Mutation p.T330I 0.19 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-MZ-A6I9-01 12 2973895 2973895 C A FOXM1 Missense_Mutation p.E348D 0.07 tolerated(1) benign(0.016) TCGA-MZ-A6I9-01 14 102698092 102698092 C T MOK Silent p.P311P 0.05 TCGA-MZ-A6I9-01 14 107078514 107078514 G A IGHV1-58 Silent p.I70I 0.06 TCGA-MZ-A6I9-01 14 23871948 23871948 G A MYH6 Silent p.S320S 0.24 TCGA-MZ-A6I9-01 15 22382599 22382599 T G OR4N4 Missense_Mutation p.F43V 0.04 tolerated(0.2) benign(0.005) TCGA-MZ-A6I9-01 15 67073336 67073336 C T SMAD6 Silent p.D318D 0.40 TCGA-MZ-A6I9-01 15 78454590 78454590 C T IDH3A Silent p.V164V 0.16 TCGA-MZ-A6I9-01 16 2160311 2160311 G A PKD1 Silent p.S1619S 0.05 TCGA-MZ-A6I9-01 17 2601293 2601293 C T CLUH Missense_Mutation p.E582K 0.23 tolerated(0.15) benign(0.428) TCGA-MZ-A6I9-01 17 4462969 4462969 C G GGT6 Missense_Mutation p.R76T 0.17 tolerated(0.09) benign(0.001) TCGA-MZ-A6I9-01 17 71281908 71281908 G A CDC42EP4 Silent p.G244G 0.06 TCGA-MZ-A6I9-01 17 8014781 8014781 C T ALOXE3 Missense_Mutation p.V417I 0.17 tolerated(0.32) benign(0.006) TCGA-MZ-A6I9-01 18 60241608 60241608 C A ZCCHC2 Missense_Mutation p.A765E 0.10 tolerated(0.05) benign(0.075) TCGA-MZ-A6I9-01 19 15073002 15073002 C G SLC1A6 Missense_Mutation p.E249D 0.04 tolerated(0.1) benign(0.051) TCGA-MZ-A6I9-01 19 1615558 1615558 G A TCF3 Intron 0.23 TCGA-MZ-A6I9-01 19 40827960 40827960 C G C19orf47 Missense_Mutation p.Q366H 0.15 deleterious(0) probably_damaging(0.994) TCGA-MZ-A6I9-01 19 44500969 44500977 ATGTGATAA - ZNF155 In_Frame_Del p.C332_K334del 0.14 TCGA-MZ-A6I9-01 19 58579419 58579419 G T ZNF135 Nonsense_Mutation p.E547* 0.24 TCGA-MZ-A6I9-01 1 111493993 111493993 G C LRIF1 Missense_Mutation p.Q505E 0.04 deleterious(0.02) benign(0.388) TCGA-MZ-A6I9-01 1 151315105 151315105 G T RFX5 Silent p.R470R 0.22 TCGA-MZ-A6I9-01 1 176833488 176833488 T G ASTN1 Silent p.R1273R 0.04 TCGA-MZ-A6I9-01 1 182027001 182027001 C T ZNF648 Missense_Mutation p.A49T 0.24 tolerated(0.82) benign(0) TCGA-MZ-A6I9-01 1 186645077 186645077 C A PTGS2 Nonsense_Mutation p.G404* 0.06 TCGA-MZ-A6I9-01 1 19547305 19547305 C T EMC1 Silent p.K875K 0.19 TCGA-MZ-A6I9-01 1 27695886 27695886 C G FCN3 Silent p.V247V 0.17 TCGA-MZ-A6I9-01 1 39802098 39802098 T C MACF1 Intron 0.28 TCGA-MZ-A6I9-01 1 41483692 41483692 C T SLFNL1 Missense_Mutation p.R191Q 0.29 tolerated(0.28) benign(0.027) TCGA-MZ-A6I9-01 1 9775731 9775731 G A PIK3CD Missense_Mutation p.V92M 0.18 deleterious(0) possibly_damaging(0.729) TCGA-MZ-A6I9-01 21 45928762 45928762 G A TSPEAR Intron 0.14 TCGA-MZ-A6I9-01 2 155711734 155711734 C A KCNJ3 Missense_Mutation p.P472Q 0.09 tolerated_low_confidence(0.06) benign(0.035) TCGA-MZ-A6I9-01 2 61180204 61180204 C T PUS10 Silent p.K412K 0.11 TCGA-MZ-A6I9-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.10 deleterious(0.02) probably_damaging(0.959) TCGA-MZ-A6I9-01 3 42750454 42750454 C T CCDC13 3'UTR 0.08 TCGA-MZ-A6I9-01 3 52431881 52431886 GGGCCG - DNAH1 In_Frame_Del p.G3983_R3984del 0.16 TCGA-MZ-A6I9-01 5 153855462 153855462 G A HAND1 Silent p.H184H 0.09 TCGA-MZ-A6I9-01 5 42801322 42801322 G A SEPP1 Nonsense_Mutation p.Q216* 0.21 TCGA-MZ-A6I9-01 7 108154676 108154676 G - PNPLA8 Frame_Shift_Del p.T373Kfs*14 0.19 TCGA-MZ-A6I9-01 7 2188861 2188861 G A MAD1L1 Silent p.D333D 0.17 TCGA-MZ-A6I9-01 8 101608996 101608996 T C SNX31 Silent p.E283E 0.06 TCGA-MZ-A6I9-01 8 41577280 41577280 G A ANK1 Silent p.L369L 0.06 TCGA-MZ-A6I9-01 9 107531143 107531143 G C NIPSNAP3B Splice_Site p.X91_splice 0.18 TCGA-MZ-A6I9-01 9 79465561 79465561 C G PRUNE2 Silent p.L54L 0.12 TCGA-MZ-A6I9-01 9 99126820 99126820 T C SLC35D2 Missense_Mutation p.I69V 0.18 tolerated(0.62) benign(0.011) TCGA-MZ-A6I9-01 X 123515050 123515050 C T TENM1 Missense_Mutation p.R2512Q 0.48 tolerated(0.41) benign(0.004) TCGA-MZ-A6I9-01 X 53589160 53589160 T C HUWE1 Missense_Mutation p.Q2417R 0.17 benign(0.069) TCGA-MZ-A6I9-01 X 55650297 55650297 C A FOXR2 Silent p.V51V 0.38 TCGA-MZ-A7D7-01 10 103871212 103871212 G A LDB1 Missense_Mutation p.T36I 0.23 tolerated_low_confidence(0.15) benign(0.007) TCGA-MZ-A7D7-01 10 115610123 115610123 C G DCLRE1A Missense_Mutation p.K247N 0.19 tolerated(0.1) benign(0.08) TCGA-MZ-A7D7-01 10 116046244 116046244 G T VWA2 Missense_Mutation p.G515V 0.10 tolerated(0.15) benign(0.287) TCGA-MZ-A7D7-01 10 61898790 61898790 C T ANK3 Silent p.K890K 0.24 TCGA-MZ-A7D7-01 10 88478496 88478496 G C LDB3 Missense_Mutation p.A629P 0.33 deleterious(0) probably_damaging(0.997) TCGA-MZ-A7D7-01 10 88768892 88768892 C T RP11-96C23.10 3'Flank 0.04 TCGA-MZ-A7D7-01 11 103058262 103058262 C T DYNC2H1 Silent p.L2363L 0.34 TCGA-MZ-A7D7-01 11 134027841 134027841 C T NCAPD3 Missense_Mutation p.E1386K 0.12 tolerated(0.65) benign(0.017) TCGA-MZ-A7D7-01 11 20424503 20424503 C A PRMT3 Nonsense_Mutation p.Y248* 0.32 TCGA-MZ-A7D7-01 11 48510886 48510886 C A OR4A47 Missense_Mutation p.P181H 0.04 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-MZ-A7D7-01 11 4936675 4936675 C T OR51G2 Silent p.L73L 0.18 TCGA-MZ-A7D7-01 11 56185586 56185586 G T OR5R1 Silent p.G41G 0.25 TCGA-MZ-A7D7-01 11 65793908 65793908 G A CATSPER1 5'UTR 0.10 TCGA-MZ-A7D7-01 11 67353607 67353607 G T GSTP1 Silent p.L123L 0.15 TCGA-MZ-A7D7-01 11 75851794 75851794 G C UVRAG Missense_Mutation p.K479N 0.05 deleterious(0.02) benign(0.339) TCGA-MZ-A7D7-01 11 95718743 95718743 C T MAML2 Missense_Mutation p.D803N 0.14 unknown(0) TCGA-MZ-A7D7-01 12 107113760 107113760 C G RFX4 Silent p.L396L 0.06 TCGA-MZ-A7D7-01 12 13061550 13061550 G A GPRC5A Missense_Mutation p.V123I 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-MZ-A7D7-01 12 52284807 52284807 G T ANKRD33 Silent p.P359P 0.16 TCGA-MZ-A7D7-01 12 6058331 6058331 G C VWF Missense_Mutation p.I2764M 0.35 tolerated(0.11) possibly_damaging(0.703) TCGA-MZ-A7D7-01 12 69746053 69746053 C T LYZ Missense_Mutation p.R119C 0.20 deleterious(0.03) possibly_damaging(0.868) TCGA-MZ-A7D7-01 12 99019911 99019911 T A IKBIP Missense_Mutation p.M311L 0.27 deleterious(0.02) possibly_damaging(0.701) TCGA-MZ-A7D7-01 13 114780794 114780794 C T RASA3 Silent p.Q432Q 0.14 TCGA-MZ-A7D7-01 13 31722148 31722148 T C HSPH1 Silent p.L442L 0.23 TCGA-MZ-A7D7-01 13 37598207 37598207 G C SUPT20H Missense_Mutation p.S519C 0.13 deleterious(0.02) possibly_damaging(0.76) TCGA-MZ-A7D7-01 13 67801523 67801523 A G PCDH9 Silent p.D350D 0.08 TCGA-MZ-A7D7-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.17 TCGA-MZ-A7D7-01 13 96375576 96375576 C T DNAJC3 Missense_Mutation p.P92S 0.07 tolerated(0.14) possibly_damaging(0.759) TCGA-MZ-A7D7-01 14 24459415 24459415 T C DHRS4L2 Silent p.R51R 0.04 TCGA-MZ-A7D7-01 14 39508284 39508284 G C SEC23A Nonsense_Mutation p.S720* 0.06 TCGA-MZ-A7D7-01 14 39536445 39536445 G C SEC23A Missense_Mutation p.Q387E 0.35 tolerated(0.31) benign(0.191) TCGA-MZ-A7D7-01 14 45431503 45431503 G A FAM179B 5'UTR 0.18 TCGA-MZ-A7D7-01 14 64595250 64595250 G C SYNE2 Missense_Mutation p.Q4666H 0.20 probably_damaging(0.999) TCGA-MZ-A7D7-01 15 40764551 40764552 - G CHST14 3'UTR 0.18 TCGA-MZ-A7D7-01 15 43656252 43656252 G A ZSCAN29 Silent p.T517T 0.20 TCGA-MZ-A7D7-01 15 44166378 44166378 T G FRMD5 Missense_Mutation p.E473A 0.20 tolerated(0.52) benign(0.001) TCGA-MZ-A7D7-01 15 50790834 50790834 C G USP8 Missense_Mutation p.S1027C 0.07 tolerated(0.16) probably_damaging(0.994) TCGA-MZ-A7D7-01 15 52230343 52230343 A G LEO1 3'UTR 0.32 TCGA-MZ-A7D7-01 15 84241424 84241424 C G SH3GL3 Missense_Mutation p.Q147E 0.14 tolerated(0.21) probably_damaging(0.989) TCGA-MZ-A7D7-01 15 90634788 90634788 C T IDH2 Silent p.E68E 0.12 TCGA-MZ-A7D7-01 16 10729668 10729668 C G TEKT5 Silent p.R398R 0.07 TCGA-MZ-A7D7-01 16 27480820 27480820 C G GTF3C1 Missense_Mutation p.L1622F 0.26 tolerated(0.07) probably_damaging(0.974) TCGA-MZ-A7D7-01 16 31155036 31155036 G C PRSS36 Silent p.T281T 0.27 TCGA-MZ-A7D7-01 16 58030938 58030938 G A ZNF319 Missense_Mutation p.S411F 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-MZ-A7D7-01 16 67685742 67685742 G A RLTPR Missense_Mutation p.R861K 0.28 tolerated(1) benign(0.002) TCGA-MZ-A7D7-01 16 70208872 70208872 C G CLEC18C Missense_Mutation p.F49L 0.11 tolerated(0.13) possibly_damaging(0.885) TCGA-MZ-A7D7-01 16 70602960 70602960 T C SF3B3 Silent p.P1060P 0.08 TCGA-MZ-A7D7-01 16 70818676 70818676 T C VAC14 Intron 0.25 TCGA-MZ-A7D7-01 16 71805057 71805057 A G AP1G1 Splice_Site p.X189_splice 0.10 TCGA-MZ-A7D7-01 16 77317829 77317829 A G ADAMTS18 3'UTR 0.21 TCGA-MZ-A7D7-01 16 8998351 8998351 T C USP7 Missense_Mutation p.R549G 0.06 deleterious(0.02) possibly_damaging(0.533) TCGA-MZ-A7D7-01 17 10543903 10543903 G A MYH3 Nonsense_Mutation p.Q756* 0.13 TCGA-MZ-A7D7-01 17 12896113 12896113 G C ELAC2 3'UTR 0.13 TCGA-MZ-A7D7-01 17 15942786 15942786 C T NCOR1 Missense_Mutation p.E2306K 0.05 possibly_damaging(0.48) TCGA-MZ-A7D7-01 17 21319683 21319683 G A KCNJ12 Silent p.S343S 0.11 TCGA-MZ-A7D7-01 17 47583779 47583779 C T NGFR Silent p.C109C 0.25 TCGA-MZ-A7D7-01 17 49279000 49279000 T C MBTD1 Missense_Mutation p.I393V 0.24 tolerated(0.15) possibly_damaging(0.6) TCGA-MZ-A7D7-01 17 56388367 56388367 C G BZRAP1 Missense_Mutation p.E1097Q 0.44 tolerated(0.12) benign(0.298) TCGA-MZ-A7D7-01 17 72954850 72954850 G C HID1 Silent p.L386L 0.10 TCGA-MZ-A7D7-01 17 7577531 7577532 GG - TP53 Frame_Shift_Del p.P250Hfs*13 0.35 TCGA-MZ-A7D7-01 17 7578250 7578250 T - TP53 Frame_Shift_Del p.N200Ifs*47 0.18 TCGA-MZ-A7D7-01 17 79517412 79517412 C T C17orf70 Missense_Mutation p.D370N 0.38 tolerated(0.09) benign(0.081) TCGA-MZ-A7D7-01 17 80789951 80789951 C - ZNF750 Frame_Shift_Del p.G127Dfs*239 0.11 TCGA-MZ-A7D7-01 18 14542841 14542841 C A POTEC Missense_Mutation p.C102F 0.17 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-MZ-A7D7-01 18 43514833 43514833 C T EPG5 Silent p.E733E 0.26 TCGA-MZ-A7D7-01 18 47797810 47797810 C T MBD1 Intron 0.03 TCGA-MZ-A7D7-01 18 56202447 56202447 C A ALPK2 Nonsense_Mutation p.G1658* 0.31 TCGA-MZ-A7D7-01 18 77918269 77918269 G C PARD6G Missense_Mutation p.F172L 0.33 deleterious(0) probably_damaging(0.983) TCGA-MZ-A7D7-01 18 8624994 8624994 C G RAB12 Missense_Mutation p.I95M 0.14 deleterious(0) probably_damaging(1) TCGA-MZ-A7D7-01 19 12222319 12222319 C G ZNF788 5'UTR 0.15 TCGA-MZ-A7D7-01 19 12936651 12936651 A G RTBDN Missense_Mutation p.S219P 0.08 tolerated(0.11) unknown(0) TCGA-MZ-A7D7-01 19 19749029 19749029 G A GMIP Missense_Mutation p.S243L 0.20 tolerated(0.18) benign(0.069) TCGA-MZ-A7D7-01 19 22154848 22154848 A T ZNF208 Silent p.T996T 0.06 TCGA-MZ-A7D7-01 19 22255710 22255710 G C ZNF257 Missense_Mutation p.E35Q 0.05 deleterious(0) probably_damaging(1) TCGA-MZ-A7D7-01 19 40148570 40148570 A - LGALS16 Frame_Shift_Del p.I22Sfs*5 0.18 TCGA-MZ-A7D7-01 19 41257370 41257370 G C SNRPA Missense_Mutation p.E19D 0.04 tolerated(0.2) benign(0.026) TCGA-MZ-A7D7-01 19 42931220 42931220 C G LIPE Missense_Mutation p.G28R 0.24 tolerated_low_confidence(0.09) benign(0.001) TCGA-MZ-A7D7-01 19 4445519 4445519 C A UBXN6 Silent p.L434L 0.04 TCGA-MZ-A7D7-01 19 44891920 44891920 G A ZNF285 Nonsense_Mutation p.Q163* 0.05 TCGA-MZ-A7D7-01 19 45797632 45797632 C T MARK4 Missense_Mutation p.T507I 0.21 deleterious(0.05) probably_damaging(0.944) TCGA-MZ-A7D7-01 19 50002790 50002790 C T RPS11 Silent p.I125I 0.08 TCGA-MZ-A7D7-01 19 53619585 53619585 G A ZNF415 Silent p.Y39Y 0.26 TCGA-MZ-A7D7-01 19 58049430 58049430 G A ZNF549 Missense_Mutation p.R353K 0.05 tolerated(0.15) possibly_damaging(0.703) TCGA-MZ-A7D7-01 19 58131949 58131949 C A ZNF134 Missense_Mutation p.H154Q 0.17 tolerated(0.13) benign(0.049) TCGA-MZ-A7D7-01 19 8808866 8808866 C G ACTL9 Missense_Mutation p.K62N 0.30 deleterious(0) probably_damaging(0.998) TCGA-MZ-A7D7-01 1 111770302 111770302 T A CHI3L2 5'UTR 0.46 TCGA-MZ-A7D7-01 1 1309126 1309126 G A AURKAIP1 3'UTR 0.14 TCGA-MZ-A7D7-01 1 152659474 152659474 C G LCE2B Missense_Mutation p.S52C 0.06 tolerated_low_confidence(0.12) unknown(0) TCGA-MZ-A7D7-01 1 156503616 156503616 G C IQGAP3 Missense_Mutation p.H1309D 0.13 deleterious(0) possibly_damaging(0.891) TCGA-MZ-A7D7-01 1 159842768 159842768 C T CCDC19 Missense_Mutation p.D515N 0.39 tolerated(0.31) benign(0.006) TCGA-MZ-A7D7-01 1 161953371 161953371 A G OLFML2B 3'UTR 0.52 TCGA-MZ-A7D7-01 1 167096486 167096486 C A DUSP27 Silent p.P706P 0.09 TCGA-MZ-A7D7-01 1 173840134 173840134 G A ZBTB37 Silent p.E257E 0.14 TCGA-MZ-A7D7-01 1 177936837 177936837 G T SEC16B Missense_Mutation p.R94S 0.19 tolerated(0.07) benign(0.001) TCGA-MZ-A7D7-01 1 180022217 180022217 A G CEP350 Silent p.R1635R 0.13 TCGA-MZ-A7D7-01 1 192628716 192628716 T G RGS13 3'UTR 0.17 TCGA-MZ-A7D7-01 1 206822411 206822411 G C DYRK3 3'UTR 0.08 TCGA-MZ-A7D7-01 1 232649841 232649841 C T SIPA1L2 Silent p.E415E 0.05 TCGA-MZ-A7D7-01 1 248487820 248487820 G T OR2M7 Silent p.I17I 0.04 TCGA-MZ-A7D7-01 1 50574797 50574797 T A ELAVL4 Intron 0.57 TCGA-MZ-A7D7-01 1 84387020 84387020 G C TTLL7 Silent p.L400L 0.06 TCGA-MZ-A7D7-01 1 90399031 90399031 C G LRRC8D Missense_Mutation p.T135R 0.06 tolerated(0.51) benign(0.002) TCGA-MZ-A7D7-01 20 13055073 13055073 G A SPTLC3 Missense_Mutation p.E179K 0.11 tolerated(0.14) possibly_damaging(0.595) TCGA-MZ-A7D7-01 20 1963676 1963676 T C PDYN Missense_Mutation p.T19A 0.22 tolerated(0.78) benign(0.001) TCGA-MZ-A7D7-01 20 25472025 25472025 C A NINL Nonsense_Mutation p.E483* 0.16 TCGA-MZ-A7D7-01 20 33590016 33590016 G C MYH7B 3'UTR 0.06 TCGA-MZ-A7D7-01 20 43034712 43034712 G C HNF4A Missense_Mutation p.E44Q 0.12 tolerated(0.1) benign(0.193) TCGA-MZ-A7D7-01 20 56137247 56137247 C T PCK1 Silent p.R115R 0.11 TCGA-MZ-A7D7-01 20 57019371 57019371 A G VAPB 3'UTR 0.26 TCGA-MZ-A7D7-01 20 60470074 60470074 G A CDH4 Missense_Mutation p.D387N 0.10 deleterious(0) probably_damaging(0.998) TCGA-MZ-A7D7-01 22 18293533 18293533 C T MICAL3 Missense_Mutation p.R1831H 0.09 probably_damaging(0.997) TCGA-MZ-A7D7-01 22 29456409 29456409 G A C22orf31 Silent p.I142I 0.04 TCGA-MZ-A7D7-01 22 30857319 30857319 G C SEC14L3 Silent p.L353L 0.09 TCGA-MZ-A7D7-01 22 41513481 41513481 G T EP300 Missense_Mutation p.A129S 0.22 unknown(0) TCGA-MZ-A7D7-01 22 50722576 50722576 C T PLXNB2 Missense_Mutation p.D750N 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-MZ-A7D7-01 2 102785108 102785108 A G IL1R1 Missense_Mutation p.M236V 0.16 tolerated(0.29) benign(0.012) TCGA-MZ-A7D7-01 2 113146877 113146877 G A RGPD8 Silent p.V1215V 0.02 TCGA-MZ-A7D7-01 2 153494169 153494169 G A FMNL2 Missense_Mutation p.R976Q 0.09 benign(0.417) TCGA-MZ-A7D7-01 2 158401124 158401124 T C ACVR1C Missense_Mutation p.D259G 0.20 tolerated(0.44) probably_damaging(0.999) TCGA-MZ-A7D7-01 2 169952187 169952187 C T DHRS9 Silent p.F290F 0.04 TCGA-MZ-A7D7-01 2 179496028 179496028 C A TTN Splice_Site p.X14583_splice 0.13 TCGA-MZ-A7D7-01 2 179584857 179584857 C T TTN Missense_Mutation p.E7838K 0.15 TCGA-MZ-A7D7-01 2 202469364 202469364 C T ALS2CR11 Silent p.E96E 0.06 TCGA-MZ-A7D7-01 2 206869117 206869117 G C INO80D Missense_Mutation p.S1020C 0.25 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-MZ-A7D7-01 2 215818734 215818734 G A ABCA12 Missense_Mutation p.S2164L 0.27 tolerated(0.77) possibly_damaging(0.487) TCGA-MZ-A7D7-01 2 27121556 27121556 C G DPYSL5 Missense_Mutation p.I63M 0.21 deleterious(0) probably_damaging(0.96) TCGA-MZ-A7D7-01 2 27592056 27592056 C G EIF2B4 Missense_Mutation p.E99Q 0.18 tolerated(0.41) benign(0.071) TCGA-MZ-A7D7-01 2 40655965 40655965 C G SLC8A1 Missense_Mutation p.E486Q 0.17 deleterious(0) probably_damaging(1) TCGA-MZ-A7D7-01 2 50850745 50850745 C A NRXN1 Nonsense_Mutation p.E314* 0.29 TCGA-MZ-A7D7-01 2 69043414 69043414 T G ARHGAP25 Intron 0.15 TCGA-MZ-A7D7-01 2 74452001 74452001 C T SLC4A5 Missense_Mutation p.R1087K 0.19 tolerated(0.95) benign(0.001) TCGA-MZ-A7D7-01 2 84806759 84806759 G A DNAH6 Missense_Mutation p.E729K 0.05 deleterious(0.01) benign(0.266) TCGA-MZ-A7D7-01 2 87016465 87016465 G T CD8A Silent p.I202I 0.06 TCGA-MZ-A7D7-01 3 109049641 109049641 T G DPPA4 Missense_Mutation p.K137Q 0.45 tolerated(0.23) benign(0.346) TCGA-MZ-A7D7-01 3 113342480 113342480 C G SIDT1 Missense_Mutation p.S736C 0.04 deleterious(0.01) possibly_damaging(0.841) TCGA-MZ-A7D7-01 3 137822819 137822819 G C DZIP1L 5'UTR 0.11 TCGA-MZ-A7D7-01 3 154855962 154855962 C T MME Silent p.I264I 0.07 TCGA-MZ-A7D7-01 3 170732436 170732436 C T SLC2A2 Missense_Mutation p.D65N 0.03 tolerated(0.4) benign(0.004) TCGA-MZ-A7D7-01 3 179592146 179592146 G A PEX5L Missense_Mutation p.A232V 0.21 tolerated_low_confidence(0.35) benign(0.016) TCGA-MZ-A7D7-01 3 179592147 179592147 C A PEX5L Missense_Mutation p.A232S 0.21 tolerated_low_confidence(0.64) benign(0.004) TCGA-MZ-A7D7-01 3 182635982 182635982 T C ATP11B 3'UTR 0.12 TCGA-MZ-A7D7-01 3 64085012 64085012 C G PRICKLE2 Missense_Mutation p.R750S 0.27 tolerated(0.07) benign(0.282) TCGA-MZ-A7D7-01 3 69084235 69084235 G C TMF1 Missense_Mutation p.T728R 0.15 deleterious(0.01) benign(0.025) TCGA-MZ-A7D7-01 4 126412508 126412508 C G FAT4 Missense_Mutation p.S4844C 0.08 probably_damaging(0.997) TCGA-MZ-A7D7-01 4 186446252 186446252 C G PDLIM3 Missense_Mutation p.G56A 0.09 tolerated(0.18) benign(0.012) TCGA-MZ-A7D7-01 4 188924394 188924394 G C ZFP42 Missense_Mutation p.E145Q 0.08 deleterious(0.03) possibly_damaging(0.82) TCGA-MZ-A7D7-01 4 2082732 2082732 C T POLN Missense_Mutation p.M780I 0.05 deleterious(0) probably_damaging(0.955) TCGA-MZ-A7D7-01 4 24557974 24557974 T C DHX15 Missense_Mutation p.Y254C 0.29 deleterious(0) probably_damaging(1) TCGA-MZ-A7D7-01 4 38776793 38776793 T C TLR10 Missense_Mutation p.N140S 0.09 tolerated(0.16) benign(0.007) TCGA-MZ-A7D7-01 4 42553227 42553227 C T ATP8A1 Silent p.V530V 0.08 TCGA-MZ-A7D7-01 4 44449605 44449605 G T KCTD8 Missense_Mutation p.S312R 0.22 deleterious(0) probably_damaging(0.986) TCGA-MZ-A7D7-01 4 44449606 44449606 C T KCTD8 Missense_Mutation p.S312N 0.26 tolerated(0.11) probably_damaging(0.968) TCGA-MZ-A7D7-01 4 5785373 5785373 A T EVC Missense_Mutation p.E553V 0.15 deleterious(0) probably_damaging(0.914) TCGA-MZ-A7D7-01 4 7043387 7043387 C G CCDC96 Missense_Mutation p.E427Q 0.15 deleterious(0) probably_damaging(1) TCGA-MZ-A7D7-01 4 70596325 70596325 G T SULT1B1 Silent p.I224I 0.15 TCGA-MZ-A7D7-01 4 9784050 9784050 G A DRD5 Missense_Mutation p.V133I 0.33 tolerated(0.83) benign(0.037) TCGA-MZ-A7D7-01 5 140078156 140078156 C G HARS2 3'UTR 0.06 TCGA-MZ-A7D7-01 5 140589992 140589992 T C PCDHB12 Missense_Mutation p.S505P 0.06 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-MZ-A7D7-01 5 153381820 153381820 G C FAM114A2 Missense_Mutation p.T416S 0.08 tolerated(0.54) benign(0.007) TCGA-MZ-A7D7-01 5 156589357 156589357 G T FAM71B 3'UTR 0.11 TCGA-MZ-A7D7-01 5 156592712 156592712 G C FAM71B Silent p.P156P 0.09 TCGA-MZ-A7D7-01 5 32712495 32712495 A C NPR3 Missense_Mutation p.S205R 0.12 tolerated(0.38) possibly_damaging(0.534) TCGA-MZ-A7D7-01 5 34811882 34811882 A T RAI14 Missense_Mutation p.M193L 0.18 deleterious(0.03) benign(0.119) TCGA-MZ-A7D7-01 5 37052593 37052593 C G NIPBL Nonsense_Mutation p.Y2396* 0.17 TCGA-MZ-A7D7-01 5 37364039 37364039 C G NUP155 Missense_Mutation p.A115P 0.04 deleterious(0) probably_damaging(1) TCGA-MZ-A7D7-01 5 41176755 41176755 T G C6 Missense_Mutation p.K330N 0.08 tolerated(0.3) benign(0.004) TCGA-MZ-A7D7-01 5 80513198 80513198 A G RASGRF2 Missense_Mutation p.Y1153C 0.33 deleterious(0) probably_damaging(0.994) TCGA-MZ-A7D7-01 6 106973153 106973153 A G AIM1 Missense_Mutation p.Y1027C 0.26 tolerated(0.09) probably_damaging(0.975) TCGA-MZ-A7D7-01 6 11723676 11723676 G C ADTRP Silent p.L206L 0.03 TCGA-MZ-A7D7-01 6 144093548 144093548 C A PHACTR2 Nonsense_Mutation p.Y462* 0.26 TCGA-MZ-A7D7-01 6 151152587 151152587 C T PLEKHG1 Silent p.S780S 0.23 TCGA-MZ-A7D7-01 6 29080141 29080141 C G OR2J3 Missense_Mutation p.N158K 0.04 deleterious(0.01) benign(0.343) TCGA-MZ-A7D7-01 7 108204694 108204694 C T THAP5 Missense_Mutation p.E377K 0.26 deleterious(0) probably_damaging(0.994) TCGA-MZ-A7D7-01 7 113518332 113518332 T A PPP1R3A Missense_Mutation p.T939S 0.07 tolerated(0.4) benign(0.017) TCGA-MZ-A7D7-01 7 149171598 149171598 C T ZNF746 Silent p.P605P 0.25 TCGA-MZ-A7D7-01 7 158552833 158552833 G A ESYT2 Silent p.F461F 0.05 TCGA-MZ-A7D7-01 7 80447685 80447685 T C SEMA3C Missense_Mutation p.H126R 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-MZ-A7D7-01 7 87329767 87329767 C T RUNDC3B Missense_Mutation p.P107L 0.24 deleterious(0.01) possibly_damaging(0.833) TCGA-MZ-A7D7-01 7 91708996 91708996 C T AKAP9 Nonsense_Mutation p.Q2517* 0.12 TCGA-MZ-A7D7-01 7 97821553 97821553 C G LMTK2 Silent p.L592L 0.12 TCGA-MZ-A7D7-01 7 99084423 99084423 G C ZNF789 Missense_Mutation p.R197T 0.07 tolerated(0.15) benign(0.05) TCGA-MZ-A7D7-01 8 135621016 135621016 G A ZFAT Silent p.Y247Y 0.26 TCGA-MZ-A7D7-01 8 38681515 38681515 G A TACC1 Intron 0.04 TCGA-MZ-A7D7-01 8 38871556 38871556 T C ADAM9 Silent p.N109N 0.08 TCGA-MZ-A7D7-01 8 55538911 55538911 T C RP1 Silent p.F823F 0.04 TCGA-MZ-A7D7-01 8 63978585 63978585 C A TTPA Missense_Mutation p.V144L 0.07 tolerated(0.18) benign(0.154) TCGA-MZ-A7D7-01 8 67740902 67740902 C G SGK3 Nonsense_Mutation p.S144* 0.08 TCGA-MZ-A7D7-01 8 90782102 90782102 G C RIPK2 Missense_Mutation p.E196Q 0.19 deleterious(0) probably_damaging(1) TCGA-MZ-A7D7-01 9 102713369 102713369 G C STX17 Missense_Mutation p.E73Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-MZ-A7D7-01 9 123917162 123917162 G A CNTRL Missense_Mutation p.E1446K 0.05 probably_damaging(0.947) TCGA-MZ-A7D7-01 9 129641824 129641824 C A ZBTB34 Missense_Mutation p.A45D 0.38 deleterious(0) probably_damaging(1) TCGA-MZ-A7D7-01 9 131348215 131348215 G A SPTAN1 Missense_Mutation p.D917N 0.07 tolerated(0.58) probably_damaging(0.997) TCGA-MZ-A7D7-01 9 133957544 133957544 G T LAMC3 Silent p.L1342L 0.29 TCGA-MZ-A7D7-01 9 133957545 133957545 G T LAMC3 Nonsense_Mutation p.E1343* 0.26 TCGA-MZ-A7D7-01 9 135374895 135374895 C G C9orf171 Silent p.L180L 0.21 TCGA-MZ-A7D7-01 9 139902402 139902402 G C ABCA2 Missense_Mutation p.F2430L 0.06 deleterious_low_confidence(0) unknown(0) TCGA-MZ-A7D7-01 9 33385144 33385144 G A AQP7 Silent p.H296H 0.07 TCGA-MZ-A7D7-01 9 78686709 78686709 G C PCSK5 Missense_Mutation p.Q263H 0.05 tolerated(0.14) possibly_damaging(0.679) TCGA-MZ-A7D7-01 9 88919847 88919847 A C ZCCHC6 Missense_Mutation p.M1301R 0.09 deleterious(0) possibly_damaging(0.502) TCGA-MZ-A7D7-01 9 88932136 88932136 G A ZCCHC6 Missense_Mutation p.S1091L 0.07 tolerated(0.05) benign(0.132) TCGA-MZ-A7D7-01 X 100630177 100630177 C T BTK Silent p.L32L 0.10 TCGA-MZ-A7D7-01 X 138643976 138643976 G A F9 Missense_Mutation p.D378N 0.13 deleterious(0.03) possibly_damaging(0.73) TCGA-MZ-A7D7-01 X 153284056 153284056 C T IRAK1 Silent p.L241L 0.20 TCGA-MZ-A7D7-01 X 153678776 153678776 G A FAM50A Missense_Mutation p.R339H 0.29 deleterious(0) probably_damaging(0.967) TCGA-MZ-A7D7-01 X 44383462 44383462 C T FUNDC1 Silent p.L150L 0.41 TCGA-MZ-A7D7-01 X 54276531 54276531 C A WNK3 Missense_Mutation p.R870L 0.46 deleterious(0) possibly_damaging(0.888) TCGA-MZ-A7D7-01 X 75393429 75393429 G A PBDC1 Missense_Mutation p.E14K 0.22 deleterious(0.03) benign(0.256) TCGA-MZ-A7D7-01 X 79990684 79990684 C T BRWD3 Silent p.V309V 0.23 TCGA-P3-A5Q5-01 10 112343948 112343948 C G SMC3 Missense_Mutation p.Q367E 0.11 tolerated(1) benign(0.004) TCGA-P3-A5Q5-01 10 115374043 115374043 C G NRAP Missense_Mutation p.E1067Q 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-P3-A5Q5-01 10 120797938 120797938 C T EIF3A Silent p.E1180E 0.17 TCGA-P3-A5Q5-01 10 121196222 121196222 G A GRK5 Missense_Mutation p.M266I 0.14 deleterious(0.02) possibly_damaging(0.899) TCGA-P3-A5Q5-01 10 123727232 123727232 G A NSMCE4A Silent p.S197S 0.21 TCGA-P3-A5Q5-01 10 134006300 134006300 C G DPYSL4 Missense_Mutation p.F89L 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-P3-A5Q5-01 10 64966452 64966452 C G JMJD1C Missense_Mutation p.K1659N 0.29 deleterious(0) possibly_damaging(0.451) TCGA-P3-A5Q5-01 10 73050782 73050782 C T UNC5B Missense_Mutation p.R404C 0.19 deleterious(0.01) possibly_damaging(0.893) TCGA-P3-A5Q5-01 10 81072426 81072426 G A ZMIZ1 Missense_Mutation p.E1042K 0.17 unknown(0) TCGA-P3-A5Q5-01 10 93773754 93773754 C G BTAF1 Missense_Mutation p.Q1518E 0.15 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q5-01 10 93773781 93773781 C T BTAF1 Missense_Mutation p.L1527F 0.14 deleterious(0) probably_damaging(0.994) TCGA-P3-A5Q5-01 10 96030304 96030304 C G PLCE1 Missense_Mutation p.S1484W 0.20 deleterious(0) probably_damaging(1) TCGA-P3-A5Q5-01 10 99214507 99214507 C T ZDHHC16 Nonsense_Mutation p.R259* 0.23 TCGA-P3-A5Q5-01 11 101828953 101828953 G T KIAA1377 Missense_Mutation p.Q187H 0.19 deleterious(0.03) benign(0.178) TCGA-P3-A5Q5-01 11 117214932 117214932 G C CEP164 Missense_Mutation p.E45Q 0.33 deleterious(0.02) benign(0.077) TCGA-P3-A5Q5-01 11 119057090 119057090 C T PDZD3 Intron 0.18 TCGA-P3-A5Q5-01 11 130781546 130781546 G C SNX19 Missense_Mutation p.L599V 0.08 deleterious(0.03) possibly_damaging(0.725) TCGA-P3-A5Q5-01 11 22646256 22646256 G A FANCF Silent p.L367L 0.25 TCGA-P3-A5Q5-01 11 2444157 2444157 C T TRPM5 Missense_Mutation p.R37Q 0.33 tolerated(0.34) possibly_damaging(0.618) TCGA-P3-A5Q5-01 11 4142861 4142861 G C RRM1 Missense_Mutation p.E302Q 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-P3-A5Q5-01 11 47739054 47739054 C G FNBP4 Missense_Mutation p.E992Q 0.20 deleterious(0.03) benign(0.292) TCGA-P3-A5Q5-01 11 533550 533550 C T HRAS Missense_Mutation p.C118Y 0.32 deleterious(0.05) benign(0.039) TCGA-P3-A5Q5-01 11 5373372 5373372 T C OR51B6 Missense_Mutation p.I212T 0.25 deleterious(0) probably_damaging(0.99) TCGA-P3-A5Q5-01 11 58384768 58384768 C T ZFP91 Silent p.I434I 0.27 TCGA-P3-A5Q5-01 11 62294601 62294601 C G AHNAK Missense_Mutation p.E2430Q 0.18 possibly_damaging(0.55) TCGA-P3-A5Q5-01 11 62294856 62294856 C G AHNAK Missense_Mutation p.E2345Q 0.20 possibly_damaging(0.542) TCGA-P3-A5Q5-01 11 62400964 62400964 C T GANAB Missense_Mutation p.E217K 0.19 tolerated(0.19) possibly_damaging(0.476) TCGA-P3-A5Q5-01 11 64627491 64627491 C T EHD1 Missense_Mutation p.E274K 0.28 deleterious(0) probably_damaging(0.98) TCGA-P3-A5Q5-01 11 6897953 6897953 G C OR10A4 Missense_Mutation p.Q25H 0.25 deleterious(0.02) possibly_damaging(0.841) TCGA-P3-A5Q5-01 11 71185569 71185569 C T NADSYN1 Silent p.D265D 0.19 TCGA-P3-A5Q5-01 11 842418 842418 C G POLR2L Missense_Mutation p.E31Q 0.33 deleterious(0.05) benign(0.298) TCGA-P3-A5Q5-01 11 85396555 85396555 G A CCDC89 Missense_Mutation p.R207C 0.15 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q5-01 11 94592733 94592733 C T AMOTL1 Missense_Mutation p.A663V 0.18 tolerated(0.09) probably_damaging(0.998) TCGA-P3-A5Q5-01 11 9871600 9871600 G C SBF2 Missense_Mutation p.L926V 0.23 tolerated(0.25) benign(0.01) TCGA-P3-A5Q5-01 12 32135582 32135582 C G KIAA1551 Missense_Mutation p.P565A 0.21 tolerated(0.07) possibly_damaging(0.634) TCGA-P3-A5Q5-01 12 39727051 39727051 C G KIF21A Missense_Mutation p.R817T 0.19 deleterious(0) probably_damaging(0.91) TCGA-P3-A5Q5-01 12 41903701 41903701 G A PDZRN4 Missense_Mutation p.D397N 0.15 tolerated(0.08) benign(0.073) TCGA-P3-A5Q5-01 12 43846349 43846349 G A ADAMTS20 Missense_Mutation p.S637F 0.15 deleterious(0) possibly_damaging(0.601) TCGA-P3-A5Q5-01 12 50594715 50594715 C G LIMA1 Intron 0.27 TCGA-P3-A5Q5-01 12 51126172 51126172 C T DIP2B Silent p.C1278C 0.16 TCGA-P3-A5Q5-01 12 51442112 51442112 C G LETMD1 5'Flank 0.30 TCGA-P3-A5Q5-01 12 51888824 51888824 C G SLC4A8 Missense_Mutation p.F955L 0.17 deleterious(0) possibly_damaging(0.67) TCGA-P3-A5Q5-01 12 52914127 52914127 G A KRT5 5'UTR 0.42 TCGA-P3-A5Q5-01 12 53607396 53607396 T C RARG Missense_Mutation p.N301S 0.23 deleterious(0.04) benign(0.375) TCGA-P3-A5Q5-01 12 56493802 56493802 C T ERBB3 Missense_Mutation p.R1040W 0.19 deleterious(0) benign(0.001) TCGA-P3-A5Q5-01 12 56494849 56494849 C G ERBB3 Missense_Mutation p.S1069C 0.21 tolerated(0.18) benign(0) TCGA-P3-A5Q5-01 13 103297012 103297012 C T TPP2 Nonsense_Mutation p.Q761* 0.11 TCGA-P3-A5Q5-01 13 109699313 109699313 C T MYO16 Missense_Mutation p.S927L 0.17 deleterious(0.04) probably_damaging(0.925) TCGA-P3-A5Q5-01 13 34410461 34410461 C T RFC3 3'UTR 0.29 TCGA-P3-A5Q5-01 13 38237809 38237809 C A TRPC4 Nonsense_Mutation p.E478* 0.09 TCGA-P3-A5Q5-01 13 41767771 41767771 G A KBTBD7 Missense_Mutation p.S208L 0.22 tolerated(0.11) benign(0.345) TCGA-P3-A5Q5-01 13 52676070 52676070 C G NEK5 Missense_Mutation p.Q297H 0.24 tolerated(0.06) benign(0.04) TCGA-P3-A5Q5-01 13 52676138 52676138 C G NEK5 Missense_Mutation p.E275Q 0.18 deleterious(0.02) possibly_damaging(0.776) TCGA-P3-A5Q5-01 13 73401164 73401164 G A PIBF1 Missense_Mutation p.E275K 0.08 deleterious(0) benign(0.202) TCGA-P3-A5Q5-01 14 100363537 100363537 G C EML1 Missense_Mutation p.E264Q 0.22 deleterious(0) probably_damaging(0.976) TCGA-P3-A5Q5-01 14 101513736 101513736 C G MIR381HG Intron 0.13 TCGA-P3-A5Q5-01 14 105414321 105414321 C T AHNAK2 Silent p.K2489K 0.15 TCGA-P3-A5Q5-01 14 106845429 106845429 G C IGHV3-35 Missense_Mutation p.S82C 0.22 deleterious_low_confidence(0) benign(0.414) TCGA-P3-A5Q5-01 14 19988220 19988220 C T POTEM 3'UTR 0.22 TCGA-P3-A5Q5-01 14 20779857 20779857 C A CCNB1IP1 Missense_Mutation p.G229V 0.22 deleterious_low_confidence(0.05) benign(0.408) TCGA-P3-A5Q5-01 14 21360228 21360228 G C RNASE3 Missense_Mutation p.R128T 0.25 tolerated(1) benign(0.003) TCGA-P3-A5Q5-01 14 47342716 47342716 A G MDGA2 Missense_Mutation p.I891T 0.23 tolerated(0.09) benign(0.007) TCGA-P3-A5Q5-01 14 92600486 92600486 G T CPSF2 Missense_Mutation p.G94V 0.22 deleterious(0) probably_damaging(1) TCGA-P3-A5Q5-01 15 22929869 22929869 G A CYFIP1 Silent p.V181V 0.16 TCGA-P3-A5Q5-01 15 40212072 40212072 G T GPR176 Missense_Mutation p.F52L 0.20 tolerated(0.3) benign(0.004) TCGA-P3-A5Q5-01 15 43748812 43748812 G A TP53BP1 Missense_Mutation p.S665L 0.22 tolerated_low_confidence(0.07) benign(0.015) TCGA-P3-A5Q5-01 15 72143611 72143611 G A MYO9A Silent p.L2188L 0.12 TCGA-P3-A5Q5-01 15 75676757 75676757 C G SIN3A Missense_Mutation p.E1015Q 0.14 tolerated(0.06) benign(0.168) TCGA-P3-A5Q5-01 15 83561458 83561458 G A HOMER2 Silent p.I47I 0.17 TCGA-P3-A5Q5-01 15 89807156 89807156 G A FANCI Missense_Mutation p.E190K 0.15 deleterious(0) probably_damaging(0.962) TCGA-P3-A5Q5-01 15 91029307 91029307 C G IQGAP1 Missense_Mutation p.P1323A 0.27 tolerated(0.1) benign(0.24) TCGA-P3-A5Q5-01 16 21848553 21848553 G A NPIPB4 Silent p.L385L 0.09 TCGA-P3-A5Q5-01 16 23091342 23091342 C A USP31 Missense_Mutation p.D701Y 0.22 tolerated(0.1) probably_damaging(0.997) TCGA-P3-A5Q5-01 16 28606873 28606873 G C SULT1A2 Nonsense_Mutation p.S91* 0.16 TCGA-P3-A5Q5-01 16 30495277 30495277 C T ITGAL Silent p.I284I 0.21 TCGA-P3-A5Q5-01 16 31382953 31382953 G A ITGAX Missense_Mutation p.D670N 0.33 tolerated(0.18) benign(0.016) TCGA-P3-A5Q5-01 16 3632371 3632371 C T SLX4 Missense_Mutation p.R1826Q 0.22 tolerated(0.67) benign(0.017) TCGA-P3-A5Q5-01 16 46960843 46960843 C G GPT2 Missense_Mutation p.Q459E 0.22 deleterious(0.02) benign(0.001) TCGA-P3-A5Q5-01 16 4744970 4744970 C T NUDT16L1 Silent p.L142L 0.26 TCGA-P3-A5Q5-01 16 53726170 53726170 C T RPGRIP1L Missense_Mutation p.E113K 0.22 deleterious(0) probably_damaging(0.937) TCGA-P3-A5Q5-01 16 58201591 58201591 G A CSNK2A2 Nonsense_Mutation p.Q208* 0.32 TCGA-P3-A5Q5-01 16 779229 779229 C T HAGHL Intron 0.16 TCGA-P3-A5Q5-01 16 89724669 89724669 G C SPATA33 Missense_Mutation p.K16N 0.20 deleterious(0.04) possibly_damaging(0.752) TCGA-P3-A5Q5-01 17 10303815 10303815 C G MYH8 Missense_Mutation p.Q1209H 0.19 deleterious(0.04) probably_damaging(1) TCGA-P3-A5Q5-01 17 10541414 10541414 G C MYH3 Missense_Mutation p.F1225L 0.24 tolerated(1) benign(0) TCGA-P3-A5Q5-01 17 18023111 18023111 G A MYO15A Missense_Mutation p.E333K 0.23 benign(0.021) TCGA-P3-A5Q5-01 17 26726681 26726681 C T SLC46A1 Silent p.Q457Q 0.24 TCGA-P3-A5Q5-01 17 27370171 27370171 G A PIPOX 5'UTR 0.20 TCGA-P3-A5Q5-01 17 38816365 38816365 T A KRT222 Missense_Mutation p.E107V 0.20 deleterious(0) probably_damaging(0.98) TCGA-P3-A5Q5-01 17 40021244 40021244 G A KLHL11 Missense_Mutation p.S127L 0.19 tolerated(0.63) benign(0.004) TCGA-P3-A5Q5-01 17 40817761 40817761 C T TUBG2 Silent p.L253L 0.23 TCGA-P3-A5Q5-01 17 41001263 41001263 C G AOC2 Silent p.L583L 0.20 TCGA-P3-A5Q5-01 17 66539808 66539808 C G FAM20A Missense_Mutation p.Q258H 0.05 deleterious(0) probably_damaging(0.995) TCGA-P3-A5Q5-01 17 67108383 67108383 C G ABCA6 Silent p.L691L 0.27 TCGA-P3-A5Q5-01 17 7612627 7612627 G A EFNB3 Silent p.R252R 0.20 TCGA-P3-A5Q5-01 17 7673616 7673616 G C DNAH2 Missense_Mutation p.E1330Q 0.11 benign(0.098) TCGA-P3-A5Q5-01 17 7950325 7950325 G A ALOX15B Missense_Mutation p.R463Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q5-01 17 79974881 79974881 G C ASPSCR1 Missense_Mutation p.E608Q 0.16 tolerated(0.1) possibly_damaging(0.859) TCGA-P3-A5Q5-01 17 80789586 80789586 C A ZNF750 Nonsense_Mutation p.E249* 0.48 TCGA-P3-A5Q5-01 18 13057601 13057601 G A CEP192 Missense_Mutation p.E1376K 0.25 deleterious(0) probably_damaging(0.997) TCGA-P3-A5Q5-01 18 19995791 19995791 G C CTAGE1 Missense_Mutation p.P662A 0.15 deleterious(0.04) possibly_damaging(0.516) TCGA-P3-A5Q5-01 18 29126500 29126500 C G DSG2 Missense_Mutation p.L1051V 0.16 tolerated(0.56) benign(0.015) TCGA-P3-A5Q5-01 18 29782855 29782855 G T MEP1B Splice_Site p.X84_splice 0.31 TCGA-P3-A5Q5-01 18 31523073 31523073 C T NOL4 Missense_Mutation p.E500K 0.23 deleterious(0) probably_damaging(0.993) TCGA-P3-A5Q5-01 18 31599388 31599388 G A NOL4 Missense_Mutation p.S317L 0.08 deleterious(0.04) possibly_damaging(0.732) TCGA-P3-A5Q5-01 18 44424064 44424064 C G PIAS2 Missense_Mutation p.D332H 0.21 deleterious(0) benign(0.284) TCGA-P3-A5Q5-01 18 44625615 44625615 G A KATNAL2 Missense_Mutation p.E333K 0.20 deleterious(0) possibly_damaging(0.517) TCGA-P3-A5Q5-01 18 47811132 47811132 C T CXXC1 Silent p.V330V 0.32 TCGA-P3-A5Q5-01 18 5434087 5434087 G A EPB41L3 Silent p.I213I 0.20 TCGA-P3-A5Q5-01 18 9859311 9859311 C T RAB31 Missense_Mutation p.R193W 0.12 deleterious(0.01) probably_damaging(0.946) TCGA-P3-A5Q5-01 19 10404587 10404587 C T ICAM5 Missense_Mutation p.S560F 0.07 tolerated(0.14) probably_damaging(0.963) TCGA-P3-A5Q5-01 19 12060248 12060248 G C ZNF700 Missense_Mutation p.G470A 0.26 tolerated(0.09) benign(0.411) TCGA-P3-A5Q5-01 19 12829958 12829958 G C TNPO2 Silent p.L70L 0.26 TCGA-P3-A5Q5-01 19 15533892 15533892 G C WIZ Missense_Mutation p.P794A 0.20 deleterious_low_confidence(0) unknown(0) TCGA-P3-A5Q5-01 19 19737862 19737862 C G LPAR2 Missense_Mutation p.D78H 0.15 deleterious(0) probably_damaging(1) TCGA-P3-A5Q5-01 19 20002778 20002778 C G ZNF253 Nonsense_Mutation p.S241* 0.20 TCGA-P3-A5Q5-01 19 2251939 2251939 G A AMH Missense_Mutation p.E556K 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-P3-A5Q5-01 19 39874164 39874164 C T SAMD4B Silent p.I694I 0.25 TCGA-P3-A5Q5-01 19 39915990 39915990 C G PLEKHG2 3'UTR 0.07 TCGA-P3-A5Q5-01 19 41448092 41448092 C G AC092071.1 5'Flank 0.16 TCGA-P3-A5Q5-01 19 43866475 43866475 C G CD177 3'UTR 0.21 TCGA-P3-A5Q5-01 19 44660827 44660827 C G ZNF234 Missense_Mutation p.Q220E 0.24 tolerated(0.18) benign(0.029) TCGA-P3-A5Q5-01 19 46269022 46269022 C G SIX5 Missense_Mutation p.E653Q 0.08 tolerated_low_confidence(0.22) probably_damaging(0.986) TCGA-P3-A5Q5-01 19 48800551 48800551 G C CCDC114 Silent p.L565L 0.27 TCGA-P3-A5Q5-01 19 48950050 48950050 C G GRWD1 Missense_Mutation p.Q140E 0.41 tolerated(1) benign(0.009) TCGA-P3-A5Q5-01 19 49558122 49558122 G C CGB7 Missense_Mutation p.I53M 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-P3-A5Q5-01 19 49652940 49652940 C T PPFIA3 Missense_Mutation p.S1164F 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.553) TCGA-P3-A5Q5-01 19 49652942 49652942 C T PPFIA3 Missense_Mutation p.P1165S 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.743) TCGA-P3-A5Q5-01 19 50367447 50367447 C T PNKP Missense_Mutation p.E209K 0.42 tolerated(0.21) benign(0.002) TCGA-P3-A5Q5-01 19 53793969 53793969 C T BIRC8 5'UTR 0.45 TCGA-P3-A5Q5-01 19 53856028 53856028 C T ZNF845 Silent p.F700F 0.36 TCGA-P3-A5Q5-01 19 54080760 54080760 C G ZNF331 Missense_Mutation p.Q316E 0.22 tolerated(0.3) probably_damaging(0.981) TCGA-P3-A5Q5-01 19 9056550 9056550 G C MUC16 Nonsense_Mutation p.S10299* 0.16 TCGA-P3-A5Q5-01 19 9237262 9237262 C G OR7G3 Missense_Mutation p.R122P 0.13 deleterious(0) benign(0.356) TCGA-P3-A5Q5-01 1 100546054 100546054 G T HIAT1 Missense_Mutation p.V369F 0.20 deleterious(0) possibly_damaging(0.8) TCGA-P3-A5Q5-01 1 10707740 10707740 G A CASZ1 Intron 0.25 TCGA-P3-A5Q5-01 1 1158640 1158640 G A SDF4 Silent p.L187L 0.28 TCGA-P3-A5Q5-01 1 1158658 1158658 G C SDF4 Missense_Mutation p.I181M 0.27 deleterious(0.04) benign(0.064) TCGA-P3-A5Q5-01 1 144892253 144892253 G A PDE4DIP Intron 0.12 TCGA-P3-A5Q5-01 1 152081441 152081441 C T TCHH Missense_Mutation p.E1418K 0.21 unknown(0) TCGA-P3-A5Q5-01 1 152081624 152081624 C G TCHH Missense_Mutation p.E1357Q 0.19 unknown(0) TCGA-P3-A5Q5-01 1 152082282 152082282 C G TCHH Missense_Mutation p.E1137D 0.17 unknown(0) TCGA-P3-A5Q5-01 1 153042964 153042964 G C SPRR2B 3'UTR 0.15 TCGA-P3-A5Q5-01 1 155642519 155642519 C G YY1AP1 Missense_Mutation p.E277Q 0.09 deleterious(0.01) probably_damaging(0.944) TCGA-P3-A5Q5-01 1 156180047 156180047 C T SLC25A44 Missense_Mutation p.S257F 0.36 deleterious(0) probably_damaging(0.978) TCGA-P3-A5Q5-01 1 161049441 161049441 C G PVRL4 Missense_Mutation p.E126D 0.23 deleterious(0.02) benign(0.262) TCGA-P3-A5Q5-01 1 162343786 162343786 G A C1orf111 3'UTR 0.36 TCGA-P3-A5Q5-01 1 169845188 169845188 C T SCYL3 Silent p.V132V 0.30 TCGA-P3-A5Q5-01 1 171174566 171174567 - T FMO2 Frame_Shift_Ins p.A328Cfs*5 0.16 TCGA-P3-A5Q5-01 1 171251239 171251239 C G FMO1 Nonsense_Mutation p.S317* 0.37 TCGA-P3-A5Q5-01 1 17257809 17257809 C T CROCC Silent p.N291N 0.15 TCGA-P3-A5Q5-01 1 185173910 185173910 C G SWT1 Missense_Mutation p.S583C 0.32 tolerated(0.24) benign(0.015) TCGA-P3-A5Q5-01 1 207010027 207010027 C T IL19 Missense_Mutation p.S45F 0.46 tolerated(0.05) possibly_damaging(0.865) TCGA-P3-A5Q5-01 1 207317276 207317276 C T C4BPA Missense_Mutation p.P520S 0.38 tolerated(1) benign(0.009) TCGA-P3-A5Q5-01 1 22167727 22167727 C T HSPG2 Missense_Mutation p.G3127E 0.15 probably_damaging(1) TCGA-P3-A5Q5-01 1 237774148 237774148 C T RYR2 Silent p.F1590F 0.36 TCGA-P3-A5Q5-01 1 23779205 23779205 C T ASAP3 Silent p.L136L 0.19 TCGA-P3-A5Q5-01 1 244869039 244869039 C T DESI2 Missense_Mutation p.S178F 0.18 deleterious(0.02) benign(0.07) TCGA-P3-A5Q5-01 1 247875358 247875358 G A OR6F1 Missense_Mutation p.R234W 0.33 tolerated(0.1) benign(0.045) TCGA-P3-A5Q5-01 1 29586053 29586053 G A PTPRU Missense_Mutation p.E218K 0.19 tolerated(0.48) benign(0.002) TCGA-P3-A5Q5-01 1 32713068 32713068 G A FAM167B Missense_Mutation p.E16K 0.18 tolerated(0.07) probably_damaging(0.981) TCGA-P3-A5Q5-01 1 36785936 36785936 G A SH3D21 Missense_Mutation p.D558N 0.17 tolerated(0.1) benign(0.132) TCGA-P3-A5Q5-01 1 42041232 42041232 G A HIVEP3 Silent p.I1730I 0.15 TCGA-P3-A5Q5-01 1 42045430 42045430 G T HIVEP3 Missense_Mutation p.S1680Y 0.20 probably_damaging(0.998) TCGA-P3-A5Q5-01 1 42045758 42045758 G T HIVEP3 Missense_Mutation p.L1571M 0.16 possibly_damaging(0.613) TCGA-P3-A5Q5-01 1 42047722 42047722 G A HIVEP3 Missense_Mutation p.S916L 0.16 probably_damaging(0.996) TCGA-P3-A5Q5-01 1 42050278 42050278 G A HIVEP3 Missense_Mutation p.S64L 0.15 benign(0.001) TCGA-P3-A5Q5-01 1 43772592 43772592 C T TIE1 Missense_Mutation p.S189L 0.37 deleterious(0.02) benign(0.007) TCGA-P3-A5Q5-01 1 53676293 53676293 G A CPT2 Missense_Mutation p.R316K 0.23 tolerated(0.79) benign(0.008) TCGA-P3-A5Q5-01 1 6253099 6253099 C T RPL22 Missense_Mutation p.E45K 0.24 deleterious(0.02) benign(0.409) TCGA-P3-A5Q5-01 1 87379786 87379786 C G SEP15 5'UTR 0.12 TCGA-P3-A5Q5-01 1 92612785 92612785 C T BTBD8 Missense_Mutation p.H327Y 0.20 deleterious(0.02) benign(0.086) TCGA-P3-A5Q5-01 20 10622175 10622175 G C JAG1 Missense_Mutation p.S950C 0.24 deleterious(0) benign(0.401) TCGA-P3-A5Q5-01 20 18297346 18297346 C G ZNF133 Silent p.L616L 0.07 TCGA-P3-A5Q5-01 20 19701879 19701879 G A SLC24A3 3'UTR 0.32 TCGA-P3-A5Q5-01 20 25003652 25003652 G A ACSS1 Missense_Mutation p.S295L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-P3-A5Q5-01 20 30154072 30154072 C G HM13 Silent p.A336A 0.16 TCGA-P3-A5Q5-01 20 31387101 31387101 C T DNMT3B Nonsense_Mutation p.R576* 0.13 TCGA-P3-A5Q5-01 20 31590714 31590714 C T SUN5 Missense_Mutation p.R30Q 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.505) TCGA-P3-A5Q5-01 20 33529623 33529623 G A GSS Silent p.L167L 0.22 TCGA-P3-A5Q5-01 20 33875192 33875192 G A FAM83C Missense_Mutation p.R464W 0.21 deleterious_low_confidence(0.02) benign(0.026) TCGA-P3-A5Q5-01 20 35381261 35381261 C T DSN1 Missense_Mutation p.R334Q 0.13 deleterious(0) probably_damaging(1) TCGA-P3-A5Q5-01 20 37380805 37380805 C G ACTR5 Missense_Mutation p.L213V 0.25 tolerated(0.62) benign(0.217) TCGA-P3-A5Q5-01 20 58330363 58330363 C T PHACTR3 Missense_Mutation p.T162M 0.22 tolerated(0.09) benign(0.003) TCGA-P3-A5Q5-01 21 10951388 10951388 G A TPTE Silent p.L108L 0.12 TCGA-P3-A5Q5-01 21 28217210 28217210 C T ADAMTS1 Missense_Mutation p.E22K 0.28 tolerated_low_confidence(0.18) benign(0.002) TCGA-P3-A5Q5-01 21 30909552 30909552 C T GRIK1 Silent p.%3D 0.25 TCGA-P3-A5Q5-01 21 43411138 43411138 C T ZBTB21 Missense_Mutation p.E1023K 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-P3-A5Q5-01 21 47532053 47532053 G C COL6A2 Silent p.L92L 0.17 TCGA-P3-A5Q5-01 22 40078504 40078504 G A CACNA1I Missense_Mutation p.E1890K 0.13 tolerated(0.13) benign(0.292) TCGA-P3-A5Q5-01 22 41572777 41572777 G C EP300 Missense_Mutation p.D1688H 0.23 probably_damaging(0.999) TCGA-P3-A5Q5-01 22 50969674 50969674 G A ODF3B Missense_Mutation p.R122W 0.26 deleterious(0.02) possibly_damaging(0.863) TCGA-P3-A5Q5-01 2 101580639 101580639 G T NPAS2 Splice_Site p.X239_splice 0.16 TCGA-P3-A5Q5-01 2 101675982 101675982 G A TBC1D8 Silent p.I86I 0.18 TCGA-P3-A5Q5-01 2 116593750 116593750 T C DPP10 Silent p.I660I 0.26 TCGA-P3-A5Q5-01 2 120932482 120932482 G A EPB41L5 Silent p.%3D 0.22 TCGA-P3-A5Q5-01 2 162833336 162833336 G C SLC4A10 Silent p.L1098L 0.50 TCGA-P3-A5Q5-01 2 170938325 170938325 G C UBR3 Missense_Mutation p.R1880T 0.15 tolerated(0.68) probably_damaging(0.985) TCGA-P3-A5Q5-01 2 179582510 179582510 C G TTN Missense_Mutation p.R8364T 0.20 TCGA-P3-A5Q5-01 2 179604916 179604916 G A TTN Silent p.N4348N 0.13 TCGA-P3-A5Q5-01 2 182542615 182542615 G A NEUROD1 Missense_Mutation p.R325C 0.13 deleterious(0) probably_damaging(0.965) TCGA-P3-A5Q5-01 2 183731003 183731003 G A FRZB Missense_Mutation p.A93V 0.43 tolerated(0.13) benign(0.249) TCGA-P3-A5Q5-01 2 191845380 191845399 GGGCTGGCGTTAGGACCTAA - STAT1 Splice_Site p.X528_splice 0.27 TCGA-P3-A5Q5-01 2 196599814 196599814 T C SLC39A10 3'UTR 0.46 TCGA-P3-A5Q5-01 2 197184440 197184440 G C HECW2 Missense_Mutation p.L392V 0.13 tolerated_low_confidence(0.38) benign(0.014) TCGA-P3-A5Q5-01 2 198352695 198352695 C T HSPD1 Missense_Mutation p.E486K 0.41 deleterious(0.02) probably_damaging(0.936) TCGA-P3-A5Q5-01 2 207172263 207172263 C G ZDBF2 Missense_Mutation p.S1004C 0.17 deleterious(0) probably_damaging(0.923) TCGA-P3-A5Q5-01 2 216960780 216960780 G C TMEM169 Missense_Mutation p.D32H 0.18 deleterious(0.01) possibly_damaging(0.816) TCGA-P3-A5Q5-01 2 216960858 216960858 G A TMEM169 Missense_Mutation p.D58N 0.19 deleterious(0.04) benign(0.316) TCGA-P3-A5Q5-01 2 217148387 217148387 G C MARCH4 Missense_Mutation p.I194M 0.17 deleterious(0) probably_damaging(0.974) TCGA-P3-A5Q5-01 2 234978605 234978605 G A SPP2 Missense_Mutation p.R195K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-P3-A5Q5-01 2 242511758 242511758 C T BOK Missense_Mutation p.S187F 0.19 tolerated(0.11) benign(0.396) TCGA-P3-A5Q5-01 2 242741215 242741215 G T GAL3ST2 Nonsense_Mutation p.E47* 0.29 TCGA-P3-A5Q5-01 2 24431154 24431154 C T ITSN2 Missense_Mutation p.E1544K 0.18 tolerated(0.1) unknown(0) TCGA-P3-A5Q5-01 2 24431971 24431971 C T ITSN2 Silent p.E1531E 0.15 TCGA-P3-A5Q5-01 2 24431985 24431985 C G ITSN2 Missense_Mutation p.D1527H 0.14 deleterious(0.01) unknown(0) TCGA-P3-A5Q5-01 2 24432036 24432036 C A ITSN2 Nonsense_Mutation p.E1510* 0.10 TCGA-P3-A5Q5-01 2 64863799 64863799 C G SERTAD2 Missense_Mutation p.L69F 0.16 deleterious(0.01) possibly_damaging(0.907) TCGA-P3-A5Q5-01 2 71062641 71062641 G A CD207 Silent p.V57V 0.21 TCGA-P3-A5Q5-01 2 80529668 80529668 T A LRRTM1 Missense_Mutation p.H426L 0.29 deleterious(0) benign(0.382) TCGA-P3-A5Q5-01 2 86280055 86280055 G A POLR1A Silent p.Y759Y 0.34 TCGA-P3-A5Q5-01 2 86371549 86371549 C A IMMT Missense_Mutation p.A707S 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-P3-A5Q5-01 2 8890400 8890400 C T KIDINS220 Missense_Mutation p.E1086K 0.18 tolerated(0.08) benign(0.201) TCGA-P3-A5Q5-01 2 8890432 8890432 C G KIDINS220 Missense_Mutation p.G1075A 0.25 tolerated(0.12) benign(0.224) TCGA-P3-A5Q5-01 2 97507919 97507919 C G ANKRD23 Missense_Mutation p.E60Q 0.19 tolerated(0.06) benign(0.181) TCGA-P3-A5Q5-01 3 100295766 100295766 C T TMEM45A Intron 0.12 TCGA-P3-A5Q5-01 3 101090902 101090902 C T SENP7 Missense_Mutation p.R249Q 0.19 tolerated(0.46) benign(0.003) TCGA-P3-A5Q5-01 3 108140005 108140005 T C MYH15 Silent p.A1273A 0.23 TCGA-P3-A5Q5-01 3 109028070 109028070 G A DPPA2 Missense_Mutation p.R97W 0.15 tolerated(0.12) possibly_damaging(0.756) TCGA-P3-A5Q5-01 3 112710045 112710045 C T GTPBP8 Missense_Mutation p.H67Y 0.16 tolerated(0.17) benign(0.212) TCGA-P3-A5Q5-01 3 113374459 113374459 G A KIAA2018 Missense_Mutation p.L2024F 0.14 possibly_damaging(0.807) TCGA-P3-A5Q5-01 3 119892255 119892255 G A GPR156 Silent p.F332F 0.15 TCGA-P3-A5Q5-01 3 121305090 121305090 G C ARGFX Missense_Mutation p.E197D 0.18 tolerated(0.47) benign(0.097) TCGA-P3-A5Q5-01 3 125865695 125865695 C T ALDH1L1 Silent p.A363A 0.08 TCGA-P3-A5Q5-01 3 126178493 126178493 C T ZXDC Intron 0.15 TCGA-P3-A5Q5-01 3 128979521 128979521 C G COPG1 Silent p.V333V 0.06 TCGA-P3-A5Q5-01 3 130293197 130293197 G C COL6A6 Silent p.L1125L 0.20 TCGA-P3-A5Q5-01 3 131102278 131102278 G A NUDT16 3'UTR 0.36 TCGA-P3-A5Q5-01 3 132222099 132222099 G A DNAJC13 Silent p.L1586L 0.10 TCGA-P3-A5Q5-01 3 133878181 133878181 G C RYK Missense_Mutation p.L539V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-P3-A5Q5-01 3 137981277 137981277 C T NME9 3'UTR 0.18 TCGA-P3-A5Q5-01 3 141535592 141535592 T C GRK7 Silent p.F454F 0.20 TCGA-P3-A5Q5-01 3 142151666 142151666 C T XRN1 Missense_Mutation p.D49N 0.12 tolerated(0.14) benign(0.065) TCGA-P3-A5Q5-01 3 147106584 147106584 C T ZIC4 3'UTR 0.16 TCGA-P3-A5Q5-01 3 147106610 147106610 C T ZIC4 3'UTR 0.38 TCGA-P3-A5Q5-01 3 149686274 149686274 G C PFN2 Missense_Mutation p.L66V 0.13 tolerated(0.19) benign(0.06) TCGA-P3-A5Q5-01 3 155198718 155198718 G A PLCH1 3'UTR 0.16 TCGA-P3-A5Q5-01 3 164739023 164739023 C T SI Missense_Mutation p.R1083K 0.22 tolerated(0.19) benign(0.002) TCGA-P3-A5Q5-01 3 169644487 169644487 C T SAMD7 Missense_Mutation p.P146L 0.17 deleterious(0) probably_damaging(0.927) TCGA-P3-A5Q5-01 3 170727825 170727825 G C SLC2A2 Missense_Mutation p.L140V 0.11 tolerated(0.38) benign(0.232) TCGA-P3-A5Q5-01 3 170819360 170819360 C G TNIK Missense_Mutation p.M823I 0.13 tolerated_low_confidence(0.07) benign(0.004) TCGA-P3-A5Q5-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.28 tolerated(0.06) probably_damaging(0.998) TCGA-P3-A5Q5-01 3 25773966 25773966 C T NGLY1 Silent p.L423L 0.20 TCGA-P3-A5Q5-01 3 31789571 31789571 G A OSBPL10 Silent p.H257H 0.14 TCGA-P3-A5Q5-01 3 42740209 42740209 G A HHATL Silent p.I158I 0.07 TCGA-P3-A5Q5-01 3 49294833 49294833 G A CCDC36 3'UTR 0.21 TCGA-P3-A5Q5-01 3 49924801 49924801 G A MST1R Missense_Mutation p.S1381L 0.23 tolerated_low_confidence(0.09) benign(0.118) TCGA-P3-A5Q5-01 3 52283860 52283860 C G PPM1M 3'UTR 0.32 TCGA-P3-A5Q5-01 3 52541667 52541667 G A STAB1 Silent p.T676T 0.18 TCGA-P3-A5Q5-01 3 58270845 58270845 C T ABHD6 Missense_Mutation p.H239Y 0.10 deleterious(0.01) benign(0.232) TCGA-P3-A5Q5-01 3 71021784 71021784 C T FOXP1 Missense_Mutation p.R527Q 0.15 deleterious(0) possibly_damaging(0.826) TCGA-P3-A5Q5-01 4 110791001 110791001 G A LRIT3 Missense_Mutation p.E366K 0.16 tolerated(0.29) benign(0.163) TCGA-P3-A5Q5-01 4 120194844 120194844 G A USP53 Silent p.Q744Q 0.12 TCGA-P3-A5Q5-01 4 122682803 122682803 C G TMEM155 Missense_Mutation p.Q34H 0.23 deleterious(0) probably_damaging(0.993) TCGA-P3-A5Q5-01 4 170077719 170077719 C G SH3RF1 Missense_Mutation p.E169Q 0.18 deleterious(0) possibly_damaging(0.878) TCGA-P3-A5Q5-01 4 170077830 170077830 C G SH3RF1 Missense_Mutation p.G132R 0.20 tolerated(0.08) probably_damaging(0.997) TCGA-P3-A5Q5-01 4 177241299 177241299 C T SPCS3 Silent p.F24F 0.25 TCGA-P3-A5Q5-01 4 186339890 186339890 C G UFSP2 Missense_Mutation p.L39F 0.19 tolerated(1) benign(0.003) TCGA-P3-A5Q5-01 4 187521167 187521167 A G FAT1 Silent p.Y3996Y 0.23 TCGA-P3-A5Q5-01 4 20530620 20530620 T C SLIT2 Missense_Mutation p.L504P 0.23 tolerated(0.41) probably_damaging(0.999) TCGA-P3-A5Q5-01 4 3371902 3371902 G T RGS12 Intron 0.18 TCGA-P3-A5Q5-01 4 48546000 48546000 C G FRYL Missense_Mutation p.E1806Q 0.20 deleterious(0.01) possibly_damaging(0.74) TCGA-P3-A5Q5-01 4 985254 985254 C T SLC26A1 Missense_Mutation p.G80S 0.23 deleterious(0) probably_damaging(1) TCGA-P3-A5Q5-01 5 102482338 102482338 T C PPIP5K2 Missense_Mutation p.Y199H 0.11 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q5-01 5 132150735 132150735 C A SOWAHA Silent p.S474S 0.39 TCGA-P3-A5Q5-01 5 13758984 13758984 C G DNAH5 Missense_Mutation p.E3464Q 0.24 possibly_damaging(0.728) TCGA-P3-A5Q5-01 5 141008863 141008863 G A HDAC3 Missense_Mutation p.R163W 0.08 deleterious(0) probably_damaging(1) TCGA-P3-A5Q5-01 5 146785192 146785192 G A DPYSL3 Silent p.I378I 0.18 TCGA-P3-A5Q5-01 5 154395085 154395085 C A KIF4B Missense_Mutation p.Q556K 0.36 tolerated(0.13) benign(0.056) TCGA-P3-A5Q5-01 5 16794760 16794760 G T MYO10 Silent p.L154L 0.26 TCGA-P3-A5Q5-01 5 175772396 175772396 C T SIMC1 Missense_Mutation p.A441V 0.17 tolerated(0.13) probably_damaging(0.987) TCGA-P3-A5Q5-01 5 178418925 178418925 C G GRM6 Missense_Mutation p.E222Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-P3-A5Q5-01 5 19747265 19747265 A - CDH18 Frame_Shift_Del p.I103Mfs*14 0.21 TCGA-P3-A5Q5-01 5 32089962 32089962 C T PDZD2 Silent p.V2136V 0.19 TCGA-P3-A5Q5-01 5 32090179 32090179 G A PDZD2 Missense_Mutation p.E2209K 0.20 tolerated(0.06) benign(0.006) TCGA-P3-A5Q5-01 5 35704682 35704682 C G SPEF2 Missense_Mutation p.H809D 0.21 tolerated(0.42) benign(0.006) TCGA-P3-A5Q5-01 5 38964982 38964982 G C RICTOR Missense_Mutation p.L438V 0.22 deleterious(0) benign(0.441) TCGA-P3-A5Q5-01 5 5190238 5190238 C A ADAMTS16 Missense_Mutation p.T401N 0.05 deleterious(0) probably_damaging(1) TCGA-P3-A5Q5-01 5 71492935 71492935 C T MAP1B Silent p.V1251V 0.20 TCGA-P3-A5Q5-01 5 72311471 72311471 G A FCHO2 Missense_Mutation p.E207K 0.14 deleterious(0) benign(0.079) TCGA-P3-A5Q5-01 5 92956773 92956773 C A FAM172A Nonsense_Mutation p.E391* 0.15 TCGA-P3-A5Q5-01 6 102124560 102124560 C T GRIK2 Missense_Mutation p.R202C 0.21 deleterious(0) probably_damaging(1) TCGA-P3-A5Q5-01 6 111695940 111695940 C G REV3L Missense_Mutation p.K1206N 0.12 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-P3-A5Q5-01 6 11213618 11213618 G C NEDD9 Missense_Mutation p.Q119E 0.06 deleterious(0.01) possibly_damaging(0.688) TCGA-P3-A5Q5-01 6 125330322 125330322 C G RNF217 Intron 0.19 TCGA-P3-A5Q5-01 6 152719867 152719867 C G SYNE1 Splice_Site p.X2413_splice 0.24 TCGA-P3-A5Q5-01 6 154412513 154412513 C T OPRM1 Missense_Mutation p.S450F 0.18 deleterious(0.03) possibly_damaging(0.6) TCGA-P3-A5Q5-01 6 1610983 1610983 G A FOXC1 Silent p.L101L 0.15 TCGA-P3-A5Q5-01 6 26240845 26240845 G C HIST1H4F Missense_Mutation p.E64D 0.23 deleterious(0.03) benign(0.172) TCGA-P3-A5Q5-01 6 27806606 27806606 C T HIST1H2BN Missense_Mutation p.S56L 0.24 deleterious_low_confidence(0.04) benign(0.057) TCGA-P3-A5Q5-01 6 28219640 28219640 C G ZKSCAN4 Missense_Mutation p.R40T 0.06 tolerated(0.58) benign(0.004) TCGA-P3-A5Q5-01 6 30313141 30313141 G A RPP21 Missense_Mutation p.E42K 0.19 tolerated(0.26) possibly_damaging(0.593) TCGA-P3-A5Q5-01 6 33232653 33232653 C T VPS52 Missense_Mutation p.D436N 0.18 tolerated(0.2) benign(0.027) TCGA-P3-A5Q5-01 6 43489103 43489103 G T POLR1C 3'UTR 0.20 TCGA-P3-A5Q5-01 6 4891958 4891958 T C CDYL Silent p.I12I 0.39 TCGA-P3-A5Q5-01 6 49928037 49928037 C G DEFB114 Missense_Mutation p.E60Q 0.21 tolerated_low_confidence(0.13) benign(0.013) TCGA-P3-A5Q5-01 6 5369021 5369021 G C FARS2 Missense_Mutation p.R73T 0.10 tolerated(0.38) benign(0.02) TCGA-P3-A5Q5-01 6 6167819 6167819 C T F13A1 Missense_Mutation p.E594K 0.23 tolerated(0.21) probably_damaging(0.989) TCGA-P3-A5Q5-01 6 78172306 78172306 G A HTR1B Missense_Mutation p.S272L 0.25 tolerated(0.41) benign(0.072) TCGA-P3-A5Q5-01 7 104782803 104782803 C G SRPK2 Missense_Mutation p.E399Q 0.19 tolerated(0.43) benign(0.277) TCGA-P3-A5Q5-01 7 128475487 128475487 G A FLNC Missense_Mutation p.E154K 0.28 deleterious(0) probably_damaging(0.969) TCGA-P3-A5Q5-01 7 128488768 128488768 C A FLNC Silent p.I1578I 0.05 TCGA-P3-A5Q5-01 7 128496974 128496974 C T FLNC Silent p.T2520T 0.32 TCGA-P3-A5Q5-01 7 142658159 142658159 G A KEL Missense_Mutation p.R86W 0.19 deleterious(0.03) benign(0.002) TCGA-P3-A5Q5-01 7 147869528 147869528 G A CNTNAP2 Missense_Mutation p.D990N 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-P3-A5Q5-01 7 158716345 158716345 G C WDR60 Missense_Mutation p.L726F 0.24 deleterious(0) possibly_damaging(0.86) TCGA-P3-A5Q5-01 7 20698779 20698779 C T ABCB5 Intron 0.29 TCGA-P3-A5Q5-01 7 2409171 2409171 C G EIF3B Missense_Mutation p.P490A 0.23 deleterious(0) possibly_damaging(0.751) TCGA-P3-A5Q5-01 7 66418288 66418288 T C TMEM248 Missense_Mutation p.C286R 0.19 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q5-01 7 71135092 71135092 G A WBSCR17 Missense_Mutation p.E468K 0.04 tolerated(0.49) probably_damaging(0.925) TCGA-P3-A5Q5-01 7 75441279 75441279 G A CCL24 Silent p.F65F 0.15 TCGA-P3-A5Q5-01 7 77755125 77755125 C T MAGI2 Silent p.E1151E 0.23 TCGA-P3-A5Q5-01 7 91736691 91736691 G C AKAP9 Missense_Mutation p.R3834T 0.22 possibly_damaging(0.766) TCGA-P3-A5Q5-01 7 94540770 94540770 G A PPP1R9A Missense_Mutation p.E449K 0.19 deleterious(0) benign(0.103) TCGA-P3-A5Q5-01 7 99445814 99445814 G C CYP3A43 Missense_Mutation p.G153A 0.15 tolerated(0.38) benign(0.02) TCGA-P3-A5Q5-01 7 99621306 99621306 C A ZKSCAN1 Missense_Mutation p.F59L 0.27 deleterious(0) probably_damaging(0.987) TCGA-P3-A5Q5-01 8 121528214 121528214 G A MTBP Missense_Mutation p.E677K 0.34 tolerated(0.35) possibly_damaging(0.908) TCGA-P3-A5Q5-01 8 122629412 122629412 G A HAS2 Missense_Mutation p.S221L 0.26 deleterious(0) benign(0.102) TCGA-P3-A5Q5-01 8 124371872 124371872 C T ATAD2 Missense_Mutation p.R404Q 0.16 deleterious(0) possibly_damaging(0.69) TCGA-P3-A5Q5-01 8 145756245 145756245 C A ARHGAP39 Silent p.L997L 0.36 TCGA-P3-A5Q5-01 8 21883270 21883270 C G NPM2 Nonsense_Mutation p.S86* 0.26 TCGA-P3-A5Q5-01 8 23021507 23021507 T C TNFRSF10D 5'UTR 0.30 TCGA-P3-A5Q5-01 8 37691353 37691353 G C GPR124 Missense_Mutation p.E482Q 0.18 tolerated(0.3) benign(0.145) TCGA-P3-A5Q5-01 8 41557008 41557008 C T ANK1 Silent p.E881E 0.15 TCGA-P3-A5Q5-01 8 71619234 71619234 C T XKR9 Silent p.F113F 0.08 TCGA-P3-A5Q5-01 8 88885093 88885093 A C DCAF4L2 Silent p.S369S 0.18 TCGA-P3-A5Q5-01 8 97299290 97299290 C T PTDSS1 Silent p.L119L 0.20 TCGA-P3-A5Q5-01 9 116825030 116825030 C T AMBP Silent p.R204R 0.15 TCGA-P3-A5Q5-01 9 131008756 131008756 C G DNM1 Missense_Mutation p.I585M 0.08 tolerated(0.15) benign(0.135) TCGA-P3-A5Q5-01 9 132637139 132637139 G A USP20 Silent p.V651V 0.31 TCGA-P3-A5Q5-01 9 135470375 135470375 C G DDX31 Missense_Mutation p.G812R 0.19 deleterious_low_confidence(0.03) benign(0.015) TCGA-P3-A5Q5-01 9 139110561 139110561 C A QSOX2 Silent p.L350L 0.14 TCGA-P3-A5Q5-01 9 26996311 26996311 G C LRRC19 Nonsense_Mutation p.S261* 0.20 TCGA-P3-A5Q5-01 9 304659 304659 G A DOCK8 Silent p.Q161Q 0.05 TCGA-P3-A5Q5-01 9 8460493 8460493 C A PTPRD Nonsense_Mutation p.E1265* 0.23 TCGA-P3-A5Q5-01 X 106093309 106093309 A T TBC1D8B Missense_Mutation p.Q631L 0.43 tolerated(0.15) benign(0.071) TCGA-P3-A5Q5-01 X 135496474 135496474 A C GPR112 Missense_Mutation p.S3065R 0.35 deleterious(0) possibly_damaging(0.544) TCGA-P3-A5Q5-01 X 135618380 135618380 G C VGLL1 Silent p.V67V 0.22 TCGA-P3-A5Q5-01 X 151560766 151560766 T C GABRA3 Intron 0.38 TCGA-P3-A5Q5-01 X 2854807 2854807 C T ARSE Missense_Mutation p.A463T 0.58 tolerated(0.07) probably_damaging(0.955) TCGA-P3-A5Q5-01 X 35820394 35820394 T C MAGEB16 Silent p.V27V 0.55 TCGA-P3-A5Q5-01 X 41202088 41202089 GT - DDX3X Frame_Shift_Del 0.24 TCGA-P3-A5Q5-01 X 48368320 48368320 G A PORCN Missense_Mutation p.A38T 0.52 tolerated(0.52) benign(0.004) TCGA-P3-A5Q5-01 X 49965527 49965527 G C AKAP4 Missense_Mutation p.S5C 0.34 tolerated_low_confidence(0.17) benign(0) TCGA-P3-A5Q5-01 X 53577973 53577973 C T HUWE1 Missense_Mutation p.E3092K 0.45 benign(0.292) TCGA-P3-A5Q5-01 X 66766006 66766006 G A AR Missense_Mutation p.E340K 0.45 tolerated_low_confidence(0.06) benign(0.423) TCGA-P3-A5Q6-01 10 100195517 100195517 C T HPS1 Missense_Mutation p.E44K 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-P3-A5Q6-01 10 118357568 118357568 C T PNLIPRP1 Missense_Mutation p.T235M 0.27 tolerated(1) benign(0.049) TCGA-P3-A5Q6-01 10 120095149 120095149 A T FAM204A Missense_Mutation p.F80Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-P3-A5Q6-01 10 124742937 124742937 G A PSTK Missense_Mutation p.E220K 0.21 deleterious(0) probably_damaging(1) TCGA-P3-A5Q6-01 10 134598351 134598351 G T NKX6-2 3'UTR 0.29 TCGA-P3-A5Q6-01 10 17032492 17032492 C T CUBN Silent p.G1397G 0.06 TCGA-P3-A5Q6-01 10 20568850 20568850 C A PLXDC2 3'UTR 0.28 TCGA-P3-A5Q6-01 10 24883912 24883912 C T ARHGAP21 Silent p.L1281L 0.46 TCGA-P3-A5Q6-01 10 38301239 38301241 GTT - ZNF33A 5'UTR 0.23 TCGA-P3-A5Q6-01 10 43088925 43088925 G A ZNF33B Silent p.H491H 0.14 TCGA-P3-A5Q6-01 10 75234717 75234717 T A PPP3CB Missense_Mutation p.E161D 0.38 deleterious(0) probably_damaging(0.951) TCGA-P3-A5Q6-01 10 95791949 95791949 G A PLCE1 Silent p.P382P 0.36 TCGA-P3-A5Q6-01 10 97144014 97144014 T A SORBS1 Missense_Mutation p.R463S 0.18 tolerated_low_confidence(0.09) benign(0.02) TCGA-P3-A5Q6-01 11 101834137 101834137 A G KIAA1377 Missense_Mutation p.T791A 0.33 tolerated(0.35) benign(0.001) TCGA-P3-A5Q6-01 11 106810701 106810701 G A GUCY1A2 Missense_Mutation p.P231S 0.29 tolerated(0.36) benign(0.016) TCGA-P3-A5Q6-01 11 134253736 134253736 C G B3GAT1 Missense_Mutation p.K153N 0.42 deleterious(0) possibly_damaging(0.877) TCGA-P3-A5Q6-01 11 20959337 20959337 T C NELL1 Missense_Mutation p.C335R 0.32 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q6-01 11 5080197 5080197 G A OR52E2 Missense_Mutation p.H221Y 0.41 tolerated(1) benign(0.01) TCGA-P3-A5Q6-01 11 5475069 5475069 C T OR51I2 Silent p.A117A 0.25 TCGA-P3-A5Q6-01 11 55432661 55432661 G T OR4C6 Missense_Mutation p.V7L 0.15 deleterious_low_confidence(0.01) benign(0.021) TCGA-P3-A5Q6-01 11 66062192 66062192 G A TMEM151A Missense_Mutation p.V159M 0.23 deleterious(0.04) probably_damaging(0.912) TCGA-P3-A5Q6-01 11 71730624 71730624 T C NUMA1 Missense_Mutation p.E167G 0.38 benign(0.087) TCGA-P3-A5Q6-01 11 89531516 89531516 C A TRIM49 Missense_Mutation p.G381W 0.12 deleterious(0.02) possibly_damaging(0.591) TCGA-P3-A5Q6-01 12 10167141 10167141 C T CLEC12B Silent p.D70D 0.39 TCGA-P3-A5Q6-01 12 101880335 101880335 G C SPIC Missense_Mutation p.R178T 0.18 deleterious(0) probably_damaging(1) TCGA-P3-A5Q6-01 12 11149817 11149817 T C TAS2R20 Missense_Mutation p.S220G 0.22 deleterious(0.01) possibly_damaging(0.521) TCGA-P3-A5Q6-01 12 20792842 20792842 A G PDE3A Silent p.E734E 0.25 TCGA-P3-A5Q6-01 12 25243014 25243014 G T LRMP Missense_Mutation p.L163F 0.23 deleterious(0) probably_damaging(0.986) TCGA-P3-A5Q6-01 12 41966391 41966391 G A PDZRN4 Missense_Mutation p.E604K 0.25 deleterious(0.02) benign(0.323) TCGA-P3-A5Q6-01 12 44693489 44693489 T G TMEM117 Missense_Mutation p.F245L 0.23 tolerated(0.19) probably_damaging(0.953) TCGA-P3-A5Q6-01 12 50869524 50869524 C A LARP4 Silent p.I684I 0.39 TCGA-P3-A5Q6-01 12 7342957 7342957 G A PEX5 Splice_Site 0.05 TCGA-P3-A5Q6-01 12 7510047 7510047 C T CD163L1 Missense_Mutation p.D1439N 0.06 tolerated(0.13) benign(0.017) TCGA-P3-A5Q6-01 12 7848334 7848334 A C GDF3 5'UTR 0.16 TCGA-P3-A5Q6-01 13 32912650 32912650 T C BRCA2 Silent p.D1386D 0.48 TCGA-P3-A5Q6-01 13 96230191 96230191 C T CLDN10 Missense_Mutation p.R204W 0.16 deleterious(0) possibly_damaging(0.677) TCGA-P3-A5Q6-01 14 101488408 101488408 T C MIR379 RNA 0.08 TCGA-P3-A5Q6-01 14 103449974 103449974 G C CDC42BPB Missense_Mutation p.C270W 0.38 deleterious(0) probably_damaging(1) TCGA-P3-A5Q6-01 14 104552178 104552178 G A ASPG Missense_Mutation p.S24N 0.24 tolerated(0.57) benign(0.018) TCGA-P3-A5Q6-01 14 37132577 37132577 C A PAX9 Nonsense_Mutation p.Y160* 0.33 TCGA-P3-A5Q6-01 14 53513365 53513365 A C DDHD1 3'UTR 0.15 TCGA-P3-A5Q6-01 14 78399806 78399806 T G ADCK1 3'UTR 0.15 TCGA-P3-A5Q6-01 14 92920379 92920379 G A SLC24A4 Missense_Mutation p.R339Q 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-P3-A5Q6-01 15 101562619 101562619 T C LRRK1 Silent p.A628A 0.24 TCGA-P3-A5Q6-01 15 28260020 28260020 G T OCA2 Missense_Mutation p.L316I 0.13 tolerated(0.25) possibly_damaging(0.573) TCGA-P3-A5Q6-01 15 41099767 41099767 G A ZFYVE19 5'UTR 0.11 TCGA-P3-A5Q6-01 15 81605705 81605705 G C STARD5 Silent p.T178T 0.18 TCGA-P3-A5Q6-01 15 86807624 86807624 G T AGBL1 Nonsense_Mutation p.E362* 0.34 TCGA-P3-A5Q6-01 16 28948832 28948832 T G CD19 Missense_Mutation p.S454A 0.53 deleterious(0.01) possibly_damaging(0.817) TCGA-P3-A5Q6-01 16 3100318 3100318 T C MMP25 Silent p.Y144Y 0.26 TCGA-P3-A5Q6-01 16 53708963 53708963 G T RPGRIP1L Nonsense_Mutation p.S283* 0.41 TCGA-P3-A5Q6-01 16 57697676 57697676 C T GPR56 3'UTR 0.23 TCGA-P3-A5Q6-01 16 57951312 57951312 C T CNGB1 Missense_Mutation p.V676M 0.11 deleterious(0.03) possibly_damaging(0.468) TCGA-P3-A5Q6-01 16 81124263 81124263 G C GCSH Missense_Mutation p.H57Q 0.11 deleterious(0.02) possibly_damaging(0.625) TCGA-P3-A5Q6-01 16 89357518 89357518 C A ANKRD11 Missense_Mutation p.M100I 0.24 benign(0.38) TCGA-P3-A5Q6-01 16 9858383 9858383 C T GRIN2A Silent p.A1006A 0.18 TCGA-P3-A5Q6-01 17 28409928 28409928 G C EFCAB5 Missense_Mutation p.S1149T 0.20 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q6-01 17 30677172 30677172 G T ZNF207 5'UTR 0.25 TCGA-P3-A5Q6-01 17 32612748 32612748 G A CCL11 5'UTR 0.21 TCGA-P3-A5Q6-01 17 41102669 41102669 G A AARSD1 Missense_Mutation p.R394W 0.53 deleterious(0) probably_damaging(0.932) TCGA-P3-A5Q6-01 17 42168666 42168666 C T HDAC5 Silent p.Q454Q 0.25 TCGA-P3-A5Q6-01 17 43367874 43367874 T C MAP3K14 RNA 0.56 TCGA-P3-A5Q6-01 17 59668030 59668030 A C NACA2 Missense_Mutation p.V171G 0.48 deleterious(0) benign(0.264) TCGA-P3-A5Q6-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.60 deleterious(0) probably_damaging(1) TCGA-P3-A5Q6-01 17 79082316 79082316 G A BAIAP2 Intron 0.06 TCGA-P3-A5Q6-01 18 21649158 21649158 G A TTC39C Missense_Mutation p.R128Q 0.15 deleterious(0.03) benign(0.327) TCGA-P3-A5Q6-01 18 43438566 43438566 G T EPG5 Silent p.L2397L 0.14 TCGA-P3-A5Q6-01 18 56203186 56203186 C G ALPK2 Silent p.V1411V 0.21 TCGA-P3-A5Q6-01 18 65179007 65179007 G C DSEL Missense_Mutation p.L957V 0.29 tolerated(0.33) benign(0.014) TCGA-P3-A5Q6-01 19 11446167 11446167 C T RAB3D Missense_Mutation p.R143H 0.18 deleterious(0.01) benign(0.38) TCGA-P3-A5Q6-01 19 11577635 11577635 A G ELAVL3 Missense_Mutation p.L6P 0.13 deleterious_low_confidence(0) benign(0.333) TCGA-P3-A5Q6-01 19 2408471 2408471 G A TMPRSS9 Silent p.A286A 0.24 TCGA-P3-A5Q6-01 19 3816705 3816705 C T ZFR2 Silent p.R690R 0.52 TCGA-P3-A5Q6-01 19 38996982 38996982 G A RYR1 Missense_Mutation p.D2861N 0.37 benign(0.146) TCGA-P3-A5Q6-01 19 463818 463818 T G ODF3L2 3'UTR 0.32 TCGA-P3-A5Q6-01 19 54652230 54652230 C T CNOT3 Silent p.S414S 0.33 TCGA-P3-A5Q6-01 19 6713237 6713237 C G C3 Missense_Mutation p.K322N 0.34 tolerated(0.3) benign(0.01) TCGA-P3-A5Q6-01 1 119958097 119958097 G A HSD3B2 Missense_Mutation p.V19I 0.06 tolerated(0.49) benign(0.03) TCGA-P3-A5Q6-01 1 154909164 154909164 G A PMVK 5'UTR 0.21 TCGA-P3-A5Q6-01 1 175355182 175355182 G C TNR Missense_Mutation p.T588S 0.17 tolerated(0.18) benign(0.114) TCGA-P3-A5Q6-01 1 180063719 180063719 G C CEP350 Missense_Mutation p.E2827Q 0.18 probably_damaging(0.999) TCGA-P3-A5Q6-01 1 201008964 201008964 G T CACNA1S Missense_Mutation p.L1873M 0.35 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-P3-A5Q6-01 1 201008965 201008965 C T CACNA1S Silent p.R1872R 0.35 TCGA-P3-A5Q6-01 1 205628434 205628434 C A SLC45A3 Silent p.L530L 0.09 TCGA-P3-A5Q6-01 1 216424251 216424251 C T USH2A Missense_Mutation p.V721I 0.16 possibly_damaging(0.788) TCGA-P3-A5Q6-01 1 227920394 227920394 G C SNAP47 5'Flank 0.32 TCGA-P3-A5Q6-01 1 247323032 247323032 A G ZNF124 Silent p.Y38Y 0.44 TCGA-P3-A5Q6-01 1 27333400 27333400 G A FAM46B Missense_Mutation p.R105W 0.06 deleterious(0.01) benign(0.032) TCGA-P3-A5Q6-01 1 32842088 32842088 C T BSDC1 Missense_Mutation p.E328K 0.22 tolerated(0.13) probably_damaging(0.967) TCGA-P3-A5Q6-01 1 35226994 35226994 G A GJB4 Missense_Mutation p.E47K 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-P3-A5Q6-01 1 43220610 43220610 C T LEPRE1 Missense_Mutation p.M425I 0.33 deleterious(0.04) possibly_damaging(0.79) TCGA-P3-A5Q6-01 1 50659554 50659568 ATCATCACCTCACGA - ELAVL4 In_Frame_Del p.I176_I180del 0.14 TCGA-P3-A5Q6-01 1 99422164 99422164 C G LPPR5 Splice_Site p.X124_splice 0.17 TCGA-P3-A5Q6-01 1 99771596 99771596 C A LPPR4 Missense_Mutation p.S441Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q6-01 20 22563311 22563311 T C FOXA2 Missense_Mutation p.E190G 0.22 deleterious(0) probably_damaging(0.988) TCGA-P3-A5Q6-01 20 3103170 3103170 G A UBOX5 Missense_Mutation p.H39Y 0.19 deleterious(0) benign(0.105) TCGA-P3-A5Q6-01 20 35154463 35154463 A G DLGAP4 Intron 0.12 TCGA-P3-A5Q6-01 20 51873088 51873088 G A TSHZ2 Missense_Mutation p.V1031M 0.19 tolerated(0.15) possibly_damaging(0.714) TCGA-P3-A5Q6-01 21 41033131 41033131 C T B3GALT5 Silent p.S215S 0.51 TCGA-P3-A5Q6-01 22 17071915 17071915 T C CCT8L2 Missense_Mutation p.E509G 0.18 tolerated(0.08) benign(0.015) TCGA-P3-A5Q6-01 22 22843668 22843668 T C ZNF280B Missense_Mutation p.E19G 0.23 tolerated(0.14) benign(0.001) TCGA-P3-A5Q6-01 22 30722863 30722863 T C TBC1D10A Missense_Mutation p.K3R 0.19 tolerated_low_confidence(0.23) benign(0.033) TCGA-P3-A5Q6-01 22 31859698 31859698 C T EIF4ENIF1 Missense_Mutation p.R185Q 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-P3-A5Q6-01 22 41751979 41751979 G A ZC3H7B Missense_Mutation p.G766S 0.57 deleterious(0.01) probably_damaging(0.93) TCGA-P3-A5Q6-01 2 11770105 11770105 T A GREB1 Missense_Mutation p.F1494Y 0.21 deleterious(0) probably_damaging(0.953) TCGA-P3-A5Q6-01 2 136511787 136511787 A G UBXN4 Silent p.E91E 0.38 TCGA-P3-A5Q6-01 2 141143525 141143525 G A LRP1B Missense_Mutation p.P3490S 0.16 possibly_damaging(0.876) TCGA-P3-A5Q6-01 2 18112727 18112727 T G KCNS3 Missense_Mutation p.L151R 0.16 tolerated(0.47) benign(0.177) TCGA-P3-A5Q6-01 2 55255323 55255323 T A RTN4 Missense_Mutation p.E197V 0.24 deleterious(0.02) possibly_damaging(0.786) TCGA-P3-A5Q6-01 2 68364552 68364552 T A WDR92 Missense_Mutation p.E216V 0.12 deleterious(0) probably_damaging(0.97) TCGA-P3-A5Q6-01 2 95539177 95539177 C G TEKT4 Intron 0.19 TCGA-P3-A5Q6-01 3 11684932 11684932 T C VGLL4 Missense_Mutation p.I21V 0.37 tolerated(0.12) benign(0.346) TCGA-P3-A5Q6-01 3 119912200 119912200 G T GPR156 Missense_Mutation p.A102D 0.09 deleterious(0) probably_damaging(0.979) TCGA-P3-A5Q6-01 3 124646558 124646558 A C MUC13 Missense_Mutation p.V111G 0.32 tolerated(0.09) benign(0) TCGA-P3-A5Q6-01 3 127396654 127396654 G A ABTB1 Missense_Mutation p.V333M 0.16 deleterious(0) probably_damaging(0.984) TCGA-P3-A5Q6-01 3 168807816 168807816 C A MECOM Nonsense_Mutation p.E1002* 0.04 TCGA-P3-A5Q6-01 3 169504378 169504378 C G MYNN Missense_Mutation p.T582S 0.05 tolerated_low_confidence(1) benign(0) TCGA-P3-A5Q6-01 3 179439191 179439191 C T USP13 Missense_Mutation p.T301I 0.06 deleterious(0.01) benign(0) TCGA-P3-A5Q6-01 3 56680649 56680649 T A FAM208A Missense_Mutation p.S706C 0.54 deleterious(0.02) probably_damaging(0.951) TCGA-P3-A5Q6-01 3 73434064 73434064 G A PDZRN3 Silent p.D551D 0.17 TCGA-P3-A5Q6-01 3 97596560 97596560 G T CRYBG3 Missense_Mutation p.Q226H 0.15 tolerated(0.43) benign(0.001) TCGA-P3-A5Q6-01 3 97851626 97851626 C T OR5H1 Silent p.L29L 0.23 TCGA-P3-A5Q6-01 4 115997421 115997421 G T NDST4 Missense_Mutation p.Q258K 0.21 tolerated(0.17) benign(0.134) TCGA-P3-A5Q6-01 4 41652416 41652416 G A LIMCH1 Missense_Mutation p.G558R 0.17 deleterious(0) probably_damaging(0.929) TCGA-P3-A5Q6-01 4 47597912 47597912 G A CORIN Silent p.S985S 0.15 TCGA-P3-A5Q6-01 4 48542418 48542418 G C FRYL Missense_Mutation p.L2083V 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-P3-A5Q6-01 4 66361134 66361134 C G EPHA5 Missense_Mutation p.E346D 0.32 tolerated(1) benign(0.001) TCGA-P3-A5Q6-01 4 69512713 69512713 A C UGT2B15 3'UTR 0.14 TCGA-P3-A5Q6-01 4 70513156 70513156 C G UGT2A1 Silent p.L69L 0.12 TCGA-P3-A5Q6-01 4 71691080 71691080 T A GRSF1 Missense_Mutation p.E442D 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-P3-A5Q6-01 4 84406239 84406239 C G FAM175A 5'UTR 0.48 TCGA-P3-A5Q6-01 4 96469913 96469913 G A UNC5C Silent p.S32S 0.20 TCGA-P3-A5Q6-01 5 13841233 13841233 A G DNAH5 Silent p.L1831L 0.22 TCGA-P3-A5Q6-01 5 140627222 140627222 G A PCDHB15 Silent p.V692V 0.21 TCGA-P3-A5Q6-01 5 17354385 17354385 T C CTD-2139B15.2 RNA 0.14 TCGA-P3-A5Q6-01 5 176520484 176520484 C T FGFR4 Silent p.P443P 0.17 TCGA-P3-A5Q6-01 5 37020601 37020601 C G NIPBL Missense_Mutation p.T1684R 0.20 deleterious(0.04) possibly_damaging(0.854) TCGA-P3-A5Q6-01 5 38427339 38427339 G A EGFLAM Missense_Mutation p.G680E 0.42 deleterious(0) probably_damaging(1) TCGA-P3-A5Q6-01 5 442672 442672 T G C5orf55 Missense_Mutation p.H89P 0.50 deleterious_low_confidence(0) benign(0.402) TCGA-P3-A5Q6-01 5 80171626 80171626 A T MSH3 Missense_Mutation p.Q1120L 0.21 tolerated(0.06) benign(0.004) TCGA-P3-A5Q6-01 6 109978085 109978085 T C AK9 Silent p.A211A 0.13 TCGA-P3-A5Q6-01 6 121642893 121642893 C A TBC1D32 Missense_Mutation p.G68V 0.34 deleterious(0) probably_damaging(0.991) TCGA-P3-A5Q6-01 6 132032136 132032136 G A CTAGE9 Missense_Mutation p.P8S 0.14 tolerated(0.06) benign(0.077) TCGA-P3-A5Q6-01 6 142718802 142718802 G C GPR126 Missense_Mutation p.E493Q 0.16 tolerated(0.27) possibly_damaging(0.839) TCGA-P3-A5Q6-01 6 52268170 52268170 C T PAQR8 Silent p.T53T 0.32 TCGA-P3-A5Q6-01 7 111462468 111462468 G A DOCK4 Silent p.R960R 0.13 TCGA-P3-A5Q6-01 7 129350403 129350404 - T NRF1 Frame_Shift_Ins p.I320Yfs*14 0.30 TCGA-P3-A5Q6-01 7 149153094 149153094 G C ZNF777 Nonsense_Mutation p.S7* 0.65 TCGA-P3-A5Q6-01 7 20782527 20782527 C T ABCB5 Nonsense_Mutation p.R1018* 0.21 TCGA-P3-A5Q6-01 7 23826205 23826205 G A STK31 Missense_Mutation p.E785K 0.38 tolerated(1) benign(0) TCGA-P3-A5Q6-01 7 48545978 48545978 G A ABCA13 Silent p.K4446K 0.34 TCGA-P3-A5Q6-01 7 4917483 4917483 C T RADIL Silent p.A96A 0.33 TCGA-P3-A5Q6-01 7 73646504 73646504 A C RFC2 Missense_Mutation p.S333A 0.25 deleterious(0) benign(0.394) TCGA-P3-A5Q6-01 7 7420445 7420445 C T COL28A1 Missense_Mutation p.E752K 0.12 deleterious(0.01) benign(0.297) TCGA-P3-A5Q6-01 7 87170747 87170747 G A ABCB1 Nonsense_Mutation p.R749* 0.22 TCGA-P3-A5Q6-01 7 87369146 87369146 A T RUNDC3B Missense_Mutation p.E183D 0.28 tolerated(0.12) possibly_damaging(0.732) TCGA-P3-A5Q6-01 7 99507277 99507277 G T TRIM4 Missense_Mutation p.L160I 0.26 deleterious(0.03) probably_damaging(0.991) TCGA-P3-A5Q6-01 8 135533158 135533158 C G ZFAT Missense_Mutation p.V1068L 0.13 tolerated(1) benign(0.001) TCGA-P3-A5Q6-01 8 26484164 26484164 C G DPYSL2 Missense_Mutation p.F170L 0.22 deleterious(0) benign(0.035) TCGA-P3-A5Q6-01 8 41164294 41164294 G A SFRP1 Intron 0.20 TCGA-P3-A5Q6-01 8 77617817 77617817 A C ZFHX4 Missense_Mutation p.K498N 0.23 possibly_damaging(0.607) TCGA-P3-A5Q6-01 8 91057169 91057169 C T DECR1 Silent p.L277L 0.24 TCGA-P3-A5Q6-01 9 113704084 113704084 G T LPAR1 Missense_Mutation p.A137D 0.29 tolerated(0.08) probably_damaging(0.93) TCGA-P3-A5Q6-01 9 35059572 35059572 T A VCP Missense_Mutation p.Q641L 0.50 deleterious(0) probably_damaging(1) TCGA-P3-A5Q6-01 9 79634636 79634636 C T FOXB2 Silent p.T22T 0.26 TCGA-P3-A5Q6-01 9 95482937 95482937 G A BICD2 Missense_Mutation p.S236L 0.45 deleterious(0) possibly_damaging(0.637) TCGA-P3-A5Q6-01 X 13776517 13776517 T C OFD1 Missense_Mutation p.L535S 0.63 deleterious(0) probably_damaging(0.999) TCGA-P3-A5Q6-01 X 153688832 153688832 C - PLXNA3 Frame_Shift_Del p.Y104Mfs*78 0.36 TCGA-P3-A5QA-01 10 50819554 50819554 G A SLC18A3 Silent p.A256A 0.23 TCGA-P3-A5QA-01 11 102954040 102954040 A C DCUN1D5 Missense_Mutation p.V65G 0.07 deleterious(0) benign(0.365) TCGA-P3-A5QA-01 11 133801985 133801985 C T IGSF9B Missense_Mutation p.R364H 0.11 tolerated(0.24) possibly_damaging(0.467) TCGA-P3-A5QA-01 11 4790345 4790345 C T OR51F1 Missense_Mutation p.R268Q 0.11 tolerated(0.1) benign(0.015) TCGA-P3-A5QA-01 11 57185305 57185308 CAGA - SLC43A3 Frame_Shift_Del p.V195Afs*6 0.14 TCGA-P3-A5QA-01 11 62416624 62416624 G A INTS5 Nonsense_Mutation p.R310* 0.15 TCGA-P3-A5QA-01 12 112098426 112098426 C T BRAP Missense_Mutation p.C317Y 0.14 deleterious(0) probably_damaging(1) TCGA-P3-A5QA-01 12 52910505 52910506 - CA KRT5 Frame_Shift_Ins p.E452Vfs*7 0.14 TCGA-P3-A5QA-01 12 54968998 54968998 G A PDE1B Missense_Mutation p.R394H 0.07 deleterious(0) possibly_damaging(0.738) TCGA-P3-A5QA-01 12 55795015 55795015 G T OR6C65 Missense_Mutation p.A235S 0.26 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-P3-A5QA-01 12 69260699 69260699 T C CPM Missense_Mutation p.E306G 0.15 tolerated(0.08) possibly_damaging(0.655) TCGA-P3-A5QA-01 13 25021240 25021240 C T PARP4 Missense_Mutation p.E1067K 0.06 tolerated(0.11) benign(0.027) TCGA-P3-A5QA-01 13 96212437 96212437 T C CLDN10 Missense_Mutation p.F91S 0.21 deleterious(0) probably_damaging(0.994) TCGA-P3-A5QA-01 14 44974862 44974862 T C FSCB Silent p.S443S 0.09 TCGA-P3-A5QA-01 14 52985898 52985898 C T TXNDC16 Missense_Mutation p.G169E 0.18 deleterious(0) probably_damaging(1) TCGA-P3-A5QA-01 15 28228550 28228550 T G OCA2 Missense_Mutation p.T482P 0.13 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QA-01 15 74281464 74281464 G T STOML1 Missense_Mutation p.N125K 0.22 deleterious(0) benign(0.063) TCGA-P3-A5QA-01 16 1608001 1608001 G A IFT140 Silent p.H778H 0.18 TCGA-P3-A5QA-01 16 67333330 67333330 C T KCTD19 Missense_Mutation p.E308K 0.17 tolerated(0.09) benign(0.185) TCGA-P3-A5QA-01 16 89351758 89351758 C T ANKRD11 Missense_Mutation p.A398T 0.16 probably_damaging(0.956) TCGA-P3-A5QA-01 17 33904241 33904241 C A PEX12 Missense_Mutation p.V166L 0.51 tolerated(0.34) benign(0.012) TCGA-P3-A5QA-01 17 38645178 38645178 G A TNS4 Silent p.H161H 0.45 TCGA-P3-A5QA-01 17 39742589 39742589 G T KRT14 Missense_Mutation p.F166L 0.08 deleterious(0.04) benign(0.029) TCGA-P3-A5QA-01 17 40321521 40321521 C T KCNH4 Missense_Mutation p.V522I 0.15 tolerated(0.14) benign(0.001) TCGA-P3-A5QA-01 17 49710999 49710999 G A CA10 Missense_Mutation p.R268C 0.47 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QA-01 17 64684445 64684445 C T PRKCA Nonsense_Mutation p.R238* 0.11 TCGA-P3-A5QA-01 17 663353 663353 G A GLOD4 3'UTR 0.14 TCGA-P3-A5QA-01 17 72308160 72308160 C T DNAI2 Missense_Mutation p.R505W 0.13 deleterious(0) probably_damaging(0.931) TCGA-P3-A5QA-01 17 7578272 7578272 G A TP53 Missense_Mutation p.H193Y 0.49 deleterious(0) probably_damaging(1) TCGA-P3-A5QA-01 18 21735867 21735867 G C CABYR Silent p.T134T 0.19 TCGA-P3-A5QA-01 19 11915425 11915425 C A ZNF491 5'UTR 0.44 TCGA-P3-A5QA-01 19 2805086 2805086 A G THOP1 Missense_Mutation p.Y221C 0.14 deleterious(0) probably_damaging(0.998) TCGA-P3-A5QA-01 19 46973756 46973756 G A PNMAL1 Silent p.A179A 0.16 TCGA-P3-A5QA-01 19 47588398 47588398 C T ZC3H4 Missense_Mutation p.R341Q 0.18 unknown(0) TCGA-P3-A5QA-01 19 49867984 49867984 C G DKKL1 Silent p.L52L 0.09 TCGA-P3-A5QA-01 19 54672356 54672356 G A TMC4 Missense_Mutation p.L171F 0.19 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QA-01 19 56443608 56443608 G C NLRP13 Missense_Mutation p.L24V 0.12 deleterious(0) probably_damaging(0.997) TCGA-P3-A5QA-01 19 57089268 57089268 C T ZNF470 Missense_Mutation p.R491W 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-P3-A5QA-01 19 58868531 58868531 G A ZNF497 Silent p.S157S 0.07 TCGA-P3-A5QA-01 19 7615195 7615195 C T PNPLA6 Missense_Mutation p.A618V 0.26 tolerated(0.14) benign(0.005) TCGA-P3-A5QA-01 1 11575545 11575545 G A PTCHD2 Missense_Mutation p.V525M 0.17 deleterious(0) probably_damaging(0.982) TCGA-P3-A5QA-01 1 120927141 120927141 G A FCGR1B Missense_Mutation p.T280M 0.11 unknown(0) TCGA-P3-A5QA-01 1 158583611 158583611 G A SPTA1 Missense_Mutation p.R2297W 0.32 deleterious(0) possibly_damaging(0.667) TCGA-P3-A5QA-01 1 169773286 169773286 C A C1orf112 Missense_Mutation p.A128D 0.09 deleterious(0) probably_damaging(0.945) TCGA-P3-A5QA-01 1 196658607 196658607 G A CFH Missense_Mutation p.R341H 0.14 tolerated(0.21) benign(0.008) TCGA-P3-A5QA-01 1 230415140 230415140 G A GALNT2 Missense_Mutation p.S551N 0.17 tolerated(0.21) benign(0.002) TCGA-P3-A5QA-01 1 248112991 248112991 A C OR2L8 Missense_Mutation p.T278P 0.14 deleterious(0.01) possibly_damaging(0.695) TCGA-P3-A5QA-01 1 25627441 25627441 A G RHD Missense_Mutation p.D164G 0.14 tolerated(0.1) probably_damaging(0.93) TCGA-P3-A5QA-01 1 32280787 32280787 C T SPOCD1 Missense_Mutation p.G50R 0.21 tolerated_low_confidence(0.98) benign(0) TCGA-P3-A5QA-01 1 40706122 40706122 A G RLF 3'UTR 0.23 TCGA-P3-A5QA-01 1 60377361 60377361 A C CYP2J2 Missense_Mutation p.F201L 0.18 deleterious(0) probably_damaging(0.991) TCGA-P3-A5QA-01 1 981638 981638 G A AGRN Silent p.P968P 0.17 TCGA-P3-A5QA-01 1 985004 985004 G A AGRN Missense_Mutation p.V1525I 0.20 tolerated(0.35) benign(0.416) TCGA-P3-A5QA-01 20 17446004 17446004 G A PCSK2 Silent p.L412L 0.06 TCGA-P3-A5QA-01 22 23401715 23401715 G A RTDR1 Silent p.Y324Y 0.44 TCGA-P3-A5QA-01 2 204306114 204306114 C T RAPH1 Missense_Mutation p.R600Q 0.19 possibly_damaging(0.543) TCGA-P3-A5QA-01 2 236957747 236957747 G A AGAP1 Missense_Mutation p.E646K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-P3-A5QA-01 2 32768426 32768426 C T BIRC6 Missense_Mutation p.A4137V 0.19 benign(0.129) TCGA-P3-A5QA-01 2 68384611 68384611 C A WDR92 5'UTR 0.16 TCGA-P3-A5QA-01 2 73868607 73868607 G A NAT8 Missense_Mutation p.P50L 0.36 tolerated(0.14) benign(0.018) TCGA-P3-A5QA-01 3 108572548 108572548 A G TRAT1 Missense_Mutation p.T129A 0.19 tolerated(0.72) benign(0.003) TCGA-P3-A5QA-01 3 111923180 111923180 C A SLC9C1 Missense_Mutation p.G686V 0.11 deleterious(0) possibly_damaging(0.806) TCGA-P3-A5QA-01 4 119059214 119059214 C T NDST3 Silent p.H410H 0.14 TCGA-P3-A5QA-01 4 152203538 152203538 G A PRSS48 Missense_Mutation p.G152R 0.41 deleterious(0.02) possibly_damaging(0.575) TCGA-P3-A5QA-01 4 62910180 62910180 C T LPHN3 Missense_Mutation p.R1175C 0.35 deleterious(0) probably_damaging(0.992) TCGA-P3-A5QA-01 5 101815931 101815931 G T SLCO6A1 Missense_Mutation p.A189D 0.17 deleterious(0) probably_damaging(0.995) TCGA-P3-A5QA-01 5 114515698 114515698 T G TRIM36 Missense_Mutation p.I13L 0.09 deleterious(0.02) benign(0.001) TCGA-P3-A5QA-01 5 140237174 140237174 G A PCDHA10 Missense_Mutation p.G514D 0.20 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-P3-A5QA-01 5 140742042 140742042 C T PCDHGB2 Silent p.L780L 0.13 TCGA-P3-A5QA-01 5 176314638 176314638 C T HK3 Missense_Mutation p.V472M 0.19 deleterious(0) probably_damaging(1) TCGA-P3-A5QA-01 5 23510065 23510065 G A PRDM9 Missense_Mutation p.R77Q 0.09 tolerated_low_confidence(0.22) benign(0.002) TCGA-P3-A5QA-01 5 37301542 37301542 A G NUP155 Silent p.T1186T 0.10 TCGA-P3-A5QA-01 5 9063074 9063074 C A SEMA5A Nonsense_Mutation p.E815* 0.14 TCGA-P3-A5QA-01 6 168315999 168315999 G T MLLT4 Silent p.L810L 0.08 TCGA-P3-A5QA-01 6 27925800 27925800 A C OR2B6 Missense_Mutation p.Q261P 0.14 deleterious(0) probably_damaging(0.974) TCGA-P3-A5QA-01 6 30951718 30951718 C G MUC21 5'UTR 0.23 TCGA-P3-A5QA-01 6 43469298 43469298 C T TJAP1 Missense_Mutation p.R55C 0.15 deleterious(0.05) probably_damaging(0.96) TCGA-P3-A5QA-01 7 112423832 112423832 C T TMEM168 Missense_Mutation p.R350H 0.16 deleterious(0) probably_damaging(0.998) TCGA-P3-A5QA-01 7 4091385 4091385 T A SDK1 Missense_Mutation p.F945Y 0.12 tolerated(0.41) benign(0.008) TCGA-P3-A5QA-01 7 4169591 4169591 C T SDK1 Nonsense_Mutation p.R1331* 0.19 TCGA-P3-A5QA-01 7 83758445 83758445 G A SEMA3A Silent p.D109D 0.15 TCGA-P3-A5QA-01 8 144940786 144940786 C T EPPK1 Silent p.E2212E 0.12 TCGA-P3-A5QA-01 8 64100088 64100088 T G YTHDF3 Missense_Mutation p.F506V 0.09 deleterious(0) possibly_damaging(0.504) TCGA-P3-A5QA-01 9 21974696 21974697 - A CDKN2A Frame_Shift_Ins p.Y44Lfs*76 0.19 TCGA-P3-A5QA-01 9 21974725 21974742 CGCCTCCAGCAGCGCCCG - CDKN2A In_Frame_Del p.R29_A34del 0.65 TCGA-P3-A5QA-01 9 23701496 23701496 G A ELAVL2 Silent p.I198I 0.22 TCGA-P3-A5QA-01 9 84607540 84607540 A C SPATA31D1 Missense_Mutation p.I719L 0.06 tolerated(1) benign(0.018) TCGA-P3-A5QA-01 X 118586106 118586106 G A SLC25A43 Silent p.K275K 0.08 TCGA-P3-A5QE-01 10 49658867 49658867 C T ARHGAP22 Silent p.P451P 0.62 TCGA-P3-A5QE-01 11 123513292 123513292 C T SCN3B Missense_Mutation p.V103M 0.25 tolerated(0.2) probably_damaging(0.982) TCGA-P3-A5QE-01 11 124266603 124266603 G A OR8B3 Silent p.L215L 0.32 TCGA-P3-A5QE-01 11 5411307 5411307 G A OR51M1 Missense_Mutation p.A227T 0.42 deleterious(0.02) benign(0.26) TCGA-P3-A5QE-01 12 2690928 2690928 G T CACNA1C Missense_Mutation p.D690Y 0.30 deleterious(0) probably_damaging(0.987) TCGA-P3-A5QE-01 12 6500033 6500033 C T LTBR Missense_Mutation p.A413V 0.31 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QE-01 14 91749741 91749741 G C CCDC88C Nonsense_Mutation p.S1521* 0.28 TCGA-P3-A5QE-01 15 86262331 86262331 A G AKAP13 Missense_Mutation p.H2013R 0.35 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QE-01 16 1570292 1570292 G C IFT140 Missense_Mutation p.A1238G 0.27 deleterious(0) probably_damaging(0.97) TCGA-P3-A5QE-01 16 4563017 4563017 G A CDIP1 Missense_Mutation p.P97L 0.48 tolerated(0.05) possibly_damaging(0.713) TCGA-P3-A5QE-01 16 50811808 50811808 C G CYLD Nonsense_Mutation p.S365* 0.49 TCGA-P3-A5QE-01 17 37922495 37922495 C T IKZF3 Missense_Mutation p.E360K 0.35 tolerated(0.48) benign(0.211) TCGA-P3-A5QE-01 17 38927945 38927948 TGAC - KRT26 Frame_Shift_Del p.V140* 0.25 TCGA-P3-A5QE-01 17 39780690 39780690 C T KRT17 Silent p.S24S 0.44 TCGA-P3-A5QE-01 17 5357225 5357225 C T DHX33 Missense_Mutation p.R408K 0.37 deleterious(0.01) probably_damaging(0.929) TCGA-P3-A5QE-01 17 74274102 74274102 G A QRICH2 Silent p.H1529H 0.35 TCGA-P3-A5QE-01 18 2892200 2892200 C T EMILIN2 Missense_Mutation p.T692M 0.30 tolerated(0.07) benign(0.033) TCGA-P3-A5QE-01 19 48244640 48244640 G A EHD2 Missense_Mutation p.R528H 0.46 tolerated(0.12) possibly_damaging(0.575) TCGA-P3-A5QE-01 19 49863257 49863257 C A TEAD2 Missense_Mutation p.G26C 0.28 deleterious(0.04) probably_damaging(0.991) TCGA-P3-A5QE-01 1 11734849 11734849 C T MAD2L2 Missense_Mutation p.A207T 0.04 tolerated(0.35) benign(0) TCGA-P3-A5QE-01 1 119427568 119427568 C T TBX15 Silent p.P426P 0.37 TCGA-P3-A5QE-01 1 147230622 147230622 C T GJA5 Missense_Mutation p.R242Q 0.33 tolerated(0.6) benign(0.004) TCGA-P3-A5QE-01 1 151162608 151162608 G C VPS72 5'UTR 0.04 TCGA-P3-A5QE-01 1 179561885 179561885 C G TDRD5 Silent p.L45L 0.21 TCGA-P3-A5QE-01 1 249141465 249141465 G A ZNF672 5'UTR 0.19 TCGA-P3-A5QE-01 1 65332658 65332658 G A JAK1 Missense_Mutation p.S294L 0.33 tolerated(0.41) benign(0.003) TCGA-P3-A5QE-01 1 77779507 77779507 C T AK5 Intron 0.30 TCGA-P3-A5QE-01 20 21687046 21687046 C T PAX1 Intron 0.26 TCGA-P3-A5QE-01 20 32199035 32199035 G A CBFA2T2 Missense_Mutation p.R114Q 0.05 deleterious(0.02) possibly_damaging(0.838) TCGA-P3-A5QE-01 20 3782599 3782599 G A CDC25B Missense_Mutation p.R317Q 0.29 tolerated(0.15) possibly_damaging(0.6) TCGA-P3-A5QE-01 20 55206371 55206371 A T TFAP2C Missense_Mutation p.E53D 0.23 tolerated(1) benign(0.079) TCGA-P3-A5QE-01 20 62705190 62705190 T A RGS19 3'UTR 0.40 TCGA-P3-A5QE-01 22 19967759 19967759 G A ARVCF Silent p.Y301Y 0.28 TCGA-P3-A5QE-01 22 40257895 40257895 A G ENTHD1 Missense_Mutation p.L156S 0.26 tolerated(0.18) benign(0.005) TCGA-P3-A5QE-01 2 16082160 16082160 C T MYCN 5'UTR 0.45 TCGA-P3-A5QE-01 2 241451335 241451335 C T ANKMY1 Silent p.P654P 0.42 TCGA-P3-A5QE-01 2 242576381 242576381 C G THAP4 Missense_Mutation p.E18Q 0.19 tolerated_low_confidence(0.15) benign(0.167) TCGA-P3-A5QE-01 2 61430323 61430323 G A USP34 Nonsense_Mutation p.R3154* 0.07 TCGA-P3-A5QE-01 2 74718497 74718497 G C TTC31 Missense_Mutation p.E227Q 0.34 deleterious(0.04) possibly_damaging(0.856) TCGA-P3-A5QE-01 3 40353003 40353003 G A EIF1B Missense_Mutation p.G80R 0.32 deleterious(0.03) probably_damaging(0.924) TCGA-P3-A5QE-01 4 118005805 118005805 C T TRAM1L1 Missense_Mutation p.G249S 0.27 tolerated(0.33) possibly_damaging(0.745) TCGA-P3-A5QE-01 5 140242298 140242298 C T AC005609.1 3'UTR 0.26 TCGA-P3-A5QE-01 5 64905078 64905078 A C TRIM23 Missense_Mutation p.L346V 0.39 tolerated(0.2) benign(0.141) TCGA-P3-A5QE-01 6 32713600 32713600 C A HLA-DQA2 Missense_Mutation p.P122T 0.33 deleterious(0.02) possibly_damaging(0.895) TCGA-P3-A5QE-01 8 144894993 144894993 C T SCRIB Missense_Mutation p.G261S 0.04 probably_damaging(1) TCGA-P3-A5QE-01 8 1719543 1719543 C T CLN8 Missense_Mutation p.T108M 0.25 deleterious(0.05) possibly_damaging(0.596) TCGA-P3-A5QE-01 9 139100937 139100937 G A QSOX2 Silent p.S578S 0.24 TCGA-P3-A5QE-01 9 34557637 34557637 C A CNTFR Missense_Mutation p.C164F 0.34 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QE-01 9 91972401 91972401 A T SECISBP2 Missense_Mutation p.N730I 0.33 deleterious(0) probably_damaging(1) TCGA-P3-A5QE-01 X 135405238 135405238 G C GPR112 Missense_Mutation p.L124F 0.41 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QE-01 X 18959756 18959756 G T PHKA2 Missense_Mutation p.S252Y 0.72 deleterious(0) probably_damaging(1) TCGA-P3-A5QF-01 10 12041914 12041914 C G UPF2 Silent p.L583L 0.35 TCGA-P3-A5QF-01 10 12041994 12041994 C - UPF2 Frame_Shift_Del p.E557Kfs*11 0.24 TCGA-P3-A5QF-01 10 12042009 12042009 C T UPF2 Splice_Site p.X552_splice 0.43 TCGA-P3-A5QF-01 10 123844321 123844321 C T TACC2 Missense_Mutation p.A769V 0.33 benign(0.067) TCGA-P3-A5QF-01 10 135076571 135076571 G C ADAM8 3'UTR 0.25 TCGA-P3-A5QF-01 10 27335406 27335406 C G ANKRD26 Missense_Mutation p.E621Q 0.09 tolerated(0.32) possibly_damaging(0.448) TCGA-P3-A5QF-01 10 33510682 33510682 G A NRP1 Missense_Mutation p.S416F 0.33 deleterious(0) probably_damaging(0.962) TCGA-P3-A5QF-01 10 37506719 37506719 G A ANKRD30A Silent p.R1004R 0.10 TCGA-P3-A5QF-01 10 37506723 37506723 G A ANKRD30A Missense_Mutation p.E1006K 0.09 tolerated(0.1) possibly_damaging(0.636) TCGA-P3-A5QF-01 10 51863892 51863892 G A FAM21A Missense_Mutation p.E576K 0.77 deleterious(0) possibly_damaging(0.836) TCGA-P3-A5QF-01 10 64415248 64415248 C T ZNF365 Intron 0.33 TCGA-P3-A5QF-01 10 64415251 64415251 C T ZNF365 Intron 0.33 TCGA-P3-A5QF-01 10 68979540 68979540 G A CTNNA3 Missense_Mutation p.S223L 0.08 tolerated(0.07) possibly_damaging(0.637) TCGA-P3-A5QF-01 10 74673202 74673202 C G OIT3 Silent p.L309L 0.05 TCGA-P3-A5QF-01 10 74684020 74684020 G A OIT3 Missense_Mutation p.V329M 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-P3-A5QF-01 10 8006971 8006971 C T TAF3 Missense_Mutation p.P500S 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-P3-A5QF-01 10 84733592 84733592 G C NRG3 Missense_Mutation p.E445Q 0.47 deleterious(0.01) probably_damaging(0.969) TCGA-P3-A5QF-01 10 88768140 88768140 G C RP11-96C23.10 3'Flank 0.38 TCGA-P3-A5QF-01 10 88768146 88768146 G A RP11-96C23.10 3'Flank 0.35 TCGA-P3-A5QF-01 10 92675632 92675632 G C ANKRD1 Silent p.L219L 0.33 TCGA-P3-A5QF-01 10 96022449 96022449 G T PLCE1 Missense_Mutation p.G1338V 0.10 tolerated(0.09) probably_damaging(0.995) TCGA-P3-A5QF-01 10 96081712 96081712 G A PLCE1 Missense_Mutation p.E2133K 0.40 deleterious(0.01) possibly_damaging(0.593) TCGA-P3-A5QF-01 10 99439458 99439458 C G AVPI1 Missense_Mutation p.E69Q 0.05 tolerated(0.55) possibly_damaging(0.86) TCGA-P3-A5QF-01 11 10013999 10013999 C G SBF2 Missense_Mutation p.R420T 0.17 deleterious(0) probably_damaging(0.998) TCGA-P3-A5QF-01 11 1162014 1162014 C T MUC5AC Silent p.I535I 0.05 TCGA-P3-A5QF-01 11 123908941 123908941 G A OR10G7 Silent p.F256F 0.16 TCGA-P3-A5QF-01 11 1253704 1253704 C T MUC5B Missense_Mutation p.S623L 0.36 unknown(0) TCGA-P3-A5QF-01 11 1275410 1275410 G A MUC5B Missense_Mutation p.M5102I 0.18 unknown(0) TCGA-P3-A5QF-01 11 129321339 129321339 G C BARX2 3'UTR 0.62 TCGA-P3-A5QF-01 11 17191186 17191186 C A PIK3C2A Nonsense_Mutation p.E35* 0.38 TCGA-P3-A5QF-01 11 17474681 17474681 C G ABCC8 Missense_Mutation p.L387F 0.34 tolerated(0.05) benign(0.032) TCGA-P3-A5QF-01 11 18301483 18301483 C G HPS5 Missense_Mutation p.L1112F 0.08 deleterious(0.04) probably_damaging(0.985) TCGA-P3-A5QF-01 11 20691224 20691224 C G NELL1 5'UTR 0.48 TCGA-P3-A5QF-01 11 21556037 21556037 C T NELL1 Missense_Mutation p.S588L 0.37 tolerated(0.08) benign(0.072) TCGA-P3-A5QF-01 11 34174075 34174075 C T ABTB2 Missense_Mutation p.M979I 0.12 deleterious(0) probably_damaging(0.977) TCGA-P3-A5QF-01 11 34175833 34175833 C T ABTB2 Silent p.V953V 0.07 TCGA-P3-A5QF-01 11 34182628 34182628 C G ABTB2 Missense_Mutation p.G740A 0.13 deleterious(0.04) probably_damaging(0.974) TCGA-P3-A5QF-01 11 34678466 34678466 G C EHF Missense_Mutation p.D208H 0.12 tolerated(0.1) possibly_damaging(0.607) TCGA-P3-A5QF-01 11 35227665 35227665 C T CD44 Missense_Mutation p.S430L 0.15 deleterious(0.02) benign(0.164) TCGA-P3-A5QF-01 11 40137439 40137439 C A LRRC4C Missense_Mutation p.R135L 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-P3-A5QF-01 11 43702344 43702344 C T HSD17B12 5'UTR 0.32 TCGA-P3-A5QF-01 11 47199930 47199930 C A PACSIN3 Silent p.L382L 0.33 TCGA-P3-A5QF-01 11 47814401 47814401 G T NUP160 Silent p.L1129L 0.40 TCGA-P3-A5QF-01 11 4903513 4903513 C T OR51T1 Silent p.I155I 0.10 TCGA-P3-A5QF-01 11 5969316 5969316 C T OR56A3 Missense_Mutation p.S247F 0.42 deleterious(0) probably_damaging(1) TCGA-P3-A5QF-01 11 61548799 61548799 C T MYRF Missense_Mutation p.S921L 0.39 tolerated_low_confidence(0.08) benign(0.271) TCGA-P3-A5QF-01 11 62373366 62373366 C G EML3 Silent p.L581L 0.24 TCGA-P3-A5QF-01 11 62435234 62435234 G C METTL12 3'UTR 0.40 TCGA-P3-A5QF-01 11 62744281 62744281 C T SLC22A6 Silent p.E559E 0.29 TCGA-P3-A5QF-01 11 65365776 65365776 C T MAP3K11 Missense_Mutation p.E844K 0.29 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-P3-A5QF-01 11 66049742 66049742 G C CNIH2 Missense_Mutation p.D32H 0.40 deleterious(0) probably_damaging(1) TCGA-P3-A5QF-01 11 66332090 66332090 G A CTSF Silent p.L420L 0.18 TCGA-P3-A5QF-01 11 73872581 73872581 C T C2CD3 Missense_Mutation p.E116K 0.61 deleterious(0) possibly_damaging(0.89) TCGA-P3-A5QF-01 11 93517613 93517613 G A MED17 5'UTR 0.73 TCGA-P3-A5QF-01 12 101679386 101679386 G C UTP20 Missense_Mutation p.W55C 0.35 deleterious(0) probably_damaging(0.987) TCGA-P3-A5QF-01 12 105420516 105420516 G A ALDH1L2 Silent p.I841I 0.22 TCGA-P3-A5QF-01 12 111087209 111087209 C T HVCN1 3'UTR 0.25 TCGA-P3-A5QF-01 12 111093078 111093078 C G HVCN1 Silent p.L124L 0.29 TCGA-P3-A5QF-01 12 111098971 111098971 G A HVCN1 Nonsense_Mutation p.Q102* 0.25 TCGA-P3-A5QF-01 12 111098987 111098987 G A HVCN1 Silent p.F96F 0.25 TCGA-P3-A5QF-01 12 111099155 111099155 G A HVCN1 Silent p.I40I 0.23 TCGA-P3-A5QF-01 12 111168434 111168434 G A PPP1CC Silent p.L106L 0.36 TCGA-P3-A5QF-01 12 123810124 123810124 G C SBNO1 Missense_Mutation p.S633C 0.04 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 12 123812020 123812020 G A SBNO1 Missense_Mutation p.L549F 0.06 deleterious(0) benign(0.436) TCGA-P3-A5QF-01 12 123832659 123832659 C T SBNO1 Missense_Mutation p.E52K 0.46 tolerated_low_confidence(0.18) benign(0.01) TCGA-P3-A5QF-01 12 124416584 124416584 C T DNAH10 Missense_Mutation p.P4291S 0.44 probably_damaging(0.968) TCGA-P3-A5QF-01 12 124882689 124882689 C G NCOR2 Missense_Mutation p.E618Q 0.29 unknown(0) TCGA-P3-A5QF-01 12 128899623 128899623 G A TMEM132C Silent p.R144R 0.11 TCGA-P3-A5QF-01 12 131285791 131285791 G A STX2 Silent p.I194I 0.27 TCGA-P3-A5QF-01 12 133732317 133732317 G C ZNF10 Missense_Mutation p.R162T 0.21 tolerated(0.08) benign(0.016) TCGA-P3-A5QF-01 12 15794688 15794688 C T EPS8 Missense_Mutation p.E549K 0.07 deleterious(0) possibly_damaging(0.79) TCGA-P3-A5QF-01 12 32945300 32945300 G C PKP2 3'UTR 0.53 TCGA-P3-A5QF-01 12 49433935 49433935 G A KMT2D Nonsense_Mutation p.Q2540* 0.37 TCGA-P3-A5QF-01 12 49951477 49951477 C G KCNH3 Nonsense_Mutation p.S998* 0.37 TCGA-P3-A5QF-01 12 51453351 51453351 C T LETMD1 3'UTR 0.44 TCGA-P3-A5QF-01 12 51640004 51640004 C G DAZAP2 3'Flank 0.46 TCGA-P3-A5QF-01 12 52282038 52282038 G A ANKRD33 Missense_Mutation p.G23E 0.34 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-P3-A5QF-01 12 52409041 52409041 G C GRASP 3'UTR 0.50 TCGA-P3-A5QF-01 12 52818532 52818532 G A KRT75 Silent p.V475V 0.05 TCGA-P3-A5QF-01 12 53169247 53169247 G C KRT76 Nonsense_Mutation p.S247* 0.38 TCGA-P3-A5QF-01 12 56482389 56482389 G C ERBB3 Missense_Mutation p.D313H 0.29 deleterious(0) benign(0.272) TCGA-P3-A5QF-01 12 57865022 57865022 C G GLI1 Silent p.L833L 0.08 TCGA-P3-A5QF-01 12 58218456 58218456 A G CTDSP2 Intron 0.08 TCGA-P3-A5QF-01 12 64437226 64437226 G A SRGAP1 Splice_Site p.X225_splice 0.49 TCGA-P3-A5QF-01 12 66712489 66712489 C G HELB Nonsense_Mutation p.S691* 0.36 TCGA-P3-A5QF-01 12 7174976 7174976 G A C1S Missense_Mutation p.E366K 0.39 tolerated(0.32) benign(0.001) TCGA-P3-A5QF-01 12 79837863 79837863 G A SYT1 Silent p.V313V 0.05 TCGA-P3-A5QF-01 12 80182559 80182559 C T PPP1R12A Missense_Mutation p.E891K 0.25 tolerated(0.06) benign(0.04) TCGA-P3-A5QF-01 12 88533332 88533332 G C CEP290 Missense_Mutation p.Q64E 0.30 possibly_damaging(0.578) TCGA-P3-A5QF-01 13 103338598 103338598 G A METTL21C Missense_Mutation p.S193L 0.35 deleterious(0) possibly_damaging(0.876) TCGA-P3-A5QF-01 13 23929020 23929020 G A SACS Silent p.F577F 0.34 TCGA-P3-A5QF-01 13 24465587 24465587 C T C1QTNF9B Silent p.V281V 0.15 TCGA-P3-A5QF-01 13 24465865 24465865 C G C1QTNF9B Missense_Mutation p.E189Q 0.08 tolerated(0.25) benign(0.044) TCGA-P3-A5QF-01 13 70281924 70281924 C T KLHL1 Missense_Mutation p.D674N 0.39 tolerated(0.14) possibly_damaging(0.85) TCGA-P3-A5QF-01 13 73369684 73369684 G A PIBF1 Missense_Mutation p.E181K 0.40 deleterious(0) probably_damaging(0.994) TCGA-P3-A5QF-01 13 73372107 73372107 G T PIBF1 Missense_Mutation p.K205N 0.38 tolerated(0.39) possibly_damaging(0.48) TCGA-P3-A5QF-01 13 99127078 99127078 C T STK24 Silent p.S210S 0.32 TCGA-P3-A5QF-01 14 102517015 102517015 G A DYNC1H1 3'UTR 0.39 TCGA-P3-A5QF-01 14 102816325 102816325 C G CINP Missense_Mutation p.E138Q 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-P3-A5QF-01 14 105173357 105173357 C G INF2 Silent p.L318L 0.41 TCGA-P3-A5QF-01 14 105419452 105419452 T C AHNAK2 Missense_Mutation p.D779G 0.34 possibly_damaging(0.71) TCGA-P3-A5QF-01 14 106866600 106866600 C G IGHV3-38 Missense_Mutation p.E52Q 0.40 tolerated_low_confidence(0.22) benign(0.002) TCGA-P3-A5QF-01 14 20404763 20404763 G A OR4K1 3'UTR 0.18 TCGA-P3-A5QF-01 14 20836610 20836610 G T TEP1 Missense_Mutation p.L2624M 0.29 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 14 23442750 23442750 C - AJUBA Frame_Shift_Del p.E507Kfs*54 0.28 TCGA-P3-A5QF-01 14 24649654 24649654 G A IPO4 Silent p.L1080L 0.41 TCGA-P3-A5QF-01 14 36942944 36942944 G A SFTA3 3'UTR 0.44 TCGA-P3-A5QF-01 14 45633749 45633749 C T FANCM Missense_Mutation p.S590F 0.34 deleterious(0) benign(0.084) TCGA-P3-A5QF-01 14 64656897 64656897 G A SYNE2 Missense_Mutation p.D5994N 0.48 probably_damaging(0.975) TCGA-P3-A5QF-01 14 71478220 71478220 C G PCNX Missense_Mutation p.S911C 0.11 deleterious(0.03) probably_damaging(0.988) TCGA-P3-A5QF-01 14 74824856 74824856 C T VRTN Missense_Mutation p.S457F 0.38 deleterious(0.02) benign(0.08) TCGA-P3-A5QF-01 14 77255515 77255515 G A ANGEL1 3'UTR 0.38 TCGA-P3-A5QF-01 14 77255521 77255521 G A ANGEL1 3'UTR 0.34 TCGA-P3-A5QF-01 14 94935850 94935850 T G SERPINA9 Missense_Mutation p.I128L 0.43 tolerated(0.08) benign(0.285) TCGA-P3-A5QF-01 15 30092859 30092859 G A TJP1 Missense_Mutation p.T25M 0.33 deleterious(0.01) possibly_damaging(0.556) TCGA-P3-A5QF-01 15 49170815 49170815 C T EID1 Nonsense_Mutation p.Q148* 0.11 TCGA-P3-A5QF-01 15 57730201 57730201 G A CGNL1 Missense_Mutation p.E2K 0.36 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-P3-A5QF-01 15 65983235 65983235 C T DENND4A Missense_Mutation p.E1232K 0.45 tolerated(0.59) benign(0.119) TCGA-P3-A5QF-01 15 72338475 72338475 G C MYO9A Missense_Mutation p.Q144E 0.23 tolerated(0.16) benign(0.017) TCGA-P3-A5QF-01 15 79292205 79292205 C T RASGRF1 Missense_Mutation p.E892K 0.31 tolerated(0.12) benign(0.015) TCGA-P3-A5QF-01 15 85147115 85147115 G C ZSCAN2 5'UTR 0.10 TCGA-P3-A5QF-01 15 85345272 85345272 C T ZNF592 Missense_Mutation p.S1151F 0.31 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 15 89873462 89873462 C T POLG Nonsense_Mutation p.W235* 0.28 TCGA-P3-A5QF-01 16 12121228 12121228 G A SNX29 Silent p.K58K 0.38 TCGA-P3-A5QF-01 16 142715 142715 G A NPRL3 Missense_Mutation p.P347L 0.50 tolerated(0.06) possibly_damaging(0.49) TCGA-P3-A5QF-01 16 19451960 19451961 CT - TMC5 Frame_Shift_Del p.L202Gfs*4 0.29 TCGA-P3-A5QF-01 16 20702540 20702540 G A ACSM1 5'UTR 0.37 TCGA-P3-A5QF-01 16 2160360 2160360 G A PKD1 Missense_Mutation p.S1603F 0.08 probably_damaging(0.995) TCGA-P3-A5QF-01 16 23083524 23083524 G A USP31 Intron 0.40 TCGA-P3-A5QF-01 16 2338038 2338038 C T ABCA3 Missense_Mutation p.R998H 0.41 tolerated(0.44) benign(0.022) TCGA-P3-A5QF-01 16 27448847 27448847 C T IL21R Missense_Mutation p.S64F 0.45 tolerated(0.11) benign(0.125) TCGA-P3-A5QF-01 16 2814238 2814238 G A SRRM2 Missense_Mutation p.E1237K 0.08 unknown(0) TCGA-P3-A5QF-01 16 2814346 2814346 G A SRRM2 Missense_Mutation p.E1273K 0.04 unknown(0) TCGA-P3-A5QF-01 16 2814810 2814810 G A SRRM2 Missense_Mutation p.M1427I 0.07 unknown(0) TCGA-P3-A5QF-01 16 2814872 2814872 G C SRRM2 Missense_Mutation p.R1448T 0.04 unknown(0) TCGA-P3-A5QF-01 16 28970012 28970012 C G NFATC2IP Intron 0.30 TCGA-P3-A5QF-01 16 29808239 29808239 G C KIF22 Missense_Mutation p.K32N 0.05 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-P3-A5QF-01 16 29809785 29809785 G A KIF22 Silent p.Q119Q 0.07 TCGA-P3-A5QF-01 16 29810702 29810702 G C KIF22 Missense_Mutation p.E293Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 16 29811305 29811305 G A KIF22 Missense_Mutation p.E406K 0.07 tolerated(0.35) benign(0.046) TCGA-P3-A5QF-01 16 31073425 31073425 G A ZNF668 Missense_Mutation p.S298L 0.27 deleterious(0) probably_damaging(0.989) TCGA-P3-A5QF-01 16 53262993 53262993 G C CHD9 Missense_Mutation p.R756T 0.36 possibly_damaging(0.839) TCGA-P3-A5QF-01 16 53488623 53488623 G A RBL2 Missense_Mutation p.E350K 0.26 deleterious(0) probably_damaging(0.994) TCGA-P3-A5QF-01 16 54965245 54965245 C T IRX5 Silent p.F45F 0.22 TCGA-P3-A5QF-01 16 57504952 57504952 C T POLR2C Missense_Mutation p.S250L 0.46 tolerated(0.12) benign(0.297) TCGA-P3-A5QF-01 16 66646644 66646644 G C CMTM3 3'UTR 0.42 TCGA-P3-A5QF-01 16 68405623 68405623 G A SMPD3 Silent p.I154I 0.27 TCGA-P3-A5QF-01 16 71483728 71483728 G C ZNF23 Nonsense_Mutation p.S67* 0.40 TCGA-P3-A5QF-01 16 74921637 74921637 G A WDR59 Missense_Mutation p.S788F 0.30 tolerated(0.12) possibly_damaging(0.752) TCGA-P3-A5QF-01 17 10253943 10253943 C G MYH13 Silent p.V358V 0.09 TCGA-P3-A5QF-01 17 12909235 12909235 C G ELAC2 Intron 0.38 TCGA-P3-A5QF-01 17 18061115 18061115 C T MYO15A Silent p.F2956F 0.32 TCGA-P3-A5QF-01 17 25758271 25758271 C T TBC1D3P5 RNA 0.44 TCGA-P3-A5QF-01 17 30349810 30349810 G C LRRC37B Missense_Mutation p.E549Q 0.41 deleterious(0.02) possibly_damaging(0.727) TCGA-P3-A5QF-01 17 32647355 32647355 G A CCL8 Silent p.L48L 0.07 TCGA-P3-A5QF-01 17 38416863 38416863 G A WIPF2 Missense_Mutation p.G47E 0.27 deleterious(0.03) possibly_damaging(0.651) TCGA-P3-A5QF-01 17 38416864 38416864 G A WIPF2 Silent p.G47G 0.27 TCGA-P3-A5QF-01 17 39137332 39137332 G C KRT40 Missense_Mutation p.D253E 0.38 deleterious(0) probably_damaging(0.998) TCGA-P3-A5QF-01 17 4046984 4046984 C T CYB5D2 5'UTR 0.35 TCGA-P3-A5QF-01 17 41143387 41143387 C G RUNDC1 Missense_Mutation p.S499C 0.39 deleterious(0) probably_damaging(0.972) TCGA-P3-A5QF-01 17 41342660 41342660 G A NBR1 Missense_Mutation p.E244K 0.50 deleterious(0.01) probably_damaging(1) TCGA-P3-A5QF-01 17 41903172 41903172 G A MPP3 Silent p.N187N 0.33 TCGA-P3-A5QF-01 17 45820115 45820115 G A TBX21 Missense_Mutation p.E211K 0.54 deleterious(0.01) benign(0.324) TCGA-P3-A5QF-01 17 5984266 5984266 G A WSCD1 Silent p.R96R 0.53 TCGA-P3-A5QF-01 17 60061627 60061627 G C MED13 Missense_Mutation p.I931M 0.11 deleterious(0.01) probably_damaging(0.972) TCGA-P3-A5QF-01 17 60689781 60689781 G A TLK2 Missense_Mutation p.R703Q 0.20 tolerated(0.05) benign(0.169) TCGA-P3-A5QF-01 17 61892949 61892949 C T DDX42 Silent p.F643F 0.31 TCGA-P3-A5QF-01 17 67023183 67023183 C G ABCA9 Missense_Mutation p.E662Q 0.25 deleterious(0.01) possibly_damaging(0.573) TCGA-P3-A5QF-01 17 7187884 7187884 G C SLC2A4 Missense_Mutation p.E270Q 0.29 deleterious(0.01) possibly_damaging(0.823) TCGA-P3-A5QF-01 17 73661146 73661146 G C RECQL5 Silent p.L79L 0.79 TCGA-P3-A5QF-01 17 79662834 79662834 G A HGS Missense_Mutation p.E400K 0.05 deleterious(0.02) probably_damaging(0.935) TCGA-P3-A5QF-01 17 80789699 80789699 G C ZNF750 Nonsense_Mutation p.S211* 0.76 TCGA-P3-A5QF-01 18 24441126 24441126 C G AQP4 Missense_Mutation p.G194A 0.04 deleterious(0.02) probably_damaging(1) TCGA-P3-A5QF-01 18 28604361 28604361 G C DSC3 Missense_Mutation p.F243L 0.24 deleterious(0.01) benign(0.059) TCGA-P3-A5QF-01 18 28720088 28720088 C G DSC1 Missense_Mutation p.Q479H 0.34 deleterious(0.04) possibly_damaging(0.882) TCGA-P3-A5QF-01 18 30926233 30926233 C T CCDC178 Missense_Mutation p.M200I 0.20 deleterious(0.03) benign(0.023) TCGA-P3-A5QF-01 18 30926252 30926252 C T CCDC178 Missense_Mutation p.R194K 0.20 deleterious(0) probably_damaging(0.982) TCGA-P3-A5QF-01 18 3116425 3116425 C T MYOM1 Silent p.P1069P 0.10 TCGA-P3-A5QF-01 18 61328439 61328439 G C SERPINB3 Silent p.L4L 0.36 TCGA-P3-A5QF-01 18 64239444 64239444 C T CDH19 5'UTR 0.36 TCGA-P3-A5QF-01 19 1043403 1043403 G A ABCA7 Silent p.L287L 0.33 TCGA-P3-A5QF-01 19 11565296 11565296 C T ELAVL3 3'UTR 0.64 TCGA-P3-A5QF-01 19 12595594 12595594 G C ZNF709 5'UTR 0.33 TCGA-P3-A5QF-01 19 1269988 1269988 C A CIRBP Intron 0.31 TCGA-P3-A5QF-01 19 1269994 1269994 C T CIRBP Intron 0.34 TCGA-P3-A5QF-01 19 14277832 14277832 C T LPHN1 Silent p.Q135Q 0.31 TCGA-P3-A5QF-01 19 1465944 1465944 G C APC2 Missense_Mutation p.E882Q 0.29 possibly_damaging(0.76) TCGA-P3-A5QF-01 19 15807254 15807254 C T CYP4F12 Silent p.F443F 0.35 TCGA-P3-A5QF-01 19 16589881 16589881 G C CALR3 3'UTR 0.38 TCGA-P3-A5QF-01 19 17316865 17316865 G C MYO9B Missense_Mutation p.E1721Q 0.41 tolerated(0.07) probably_damaging(1) TCGA-P3-A5QF-01 19 18731388 18731388 C G TMEM59L 3'UTR 0.49 TCGA-P3-A5QF-01 19 2110168 2110168 C T AP3D1 Silent p.Q1077Q 0.27 TCGA-P3-A5QF-01 19 24010101 24010101 C G RPSAP58 Missense_Mutation p.I46M 0.28 deleterious(0.01) possibly_damaging(0.485) TCGA-P3-A5QF-01 19 33370136 33370136 G C CEP89 Missense_Mutation p.Q762E 0.42 deleterious(0.03) benign(0.121) TCGA-P3-A5QF-01 19 37620021 37620021 C T ZNF420 3'UTR 0.05 TCGA-P3-A5QF-01 19 39108020 39108020 G A MAP4K1 Silent p.I74I 0.31 TCGA-P3-A5QF-01 19 39321782 39321782 C G ECH1 Missense_Mutation p.K95N 0.42 tolerated(0.16) possibly_damaging(0.634) TCGA-P3-A5QF-01 19 39591819 39591819 C T PAPL Silent p.Y315Y 0.38 TCGA-P3-A5QF-01 19 42270107 42270107 C T CEACAM6 Silent p.L325L 0.07 TCGA-P3-A5QF-01 19 44833166 44833166 C T ZNF112 Missense_Mutation p.E388K 0.31 tolerated(1) benign(0.038) TCGA-P3-A5QF-01 19 44833397 44833397 C A ZNF112 Missense_Mutation p.D311Y 0.35 tolerated(0.09) possibly_damaging(0.838) TCGA-P3-A5QF-01 19 49489281 49489281 C G GYS1 Missense_Mutation p.Q168H 0.24 tolerated(0.53) probably_damaging(0.996) TCGA-P3-A5QF-01 19 51021537 51021537 C G LRRC4B Missense_Mutation p.G478A 0.36 tolerated_low_confidence(0.79) unknown(0) TCGA-P3-A5QF-01 19 51381741 51381741 G A KLK2 Missense_Mutation p.E238K 0.35 tolerated(0.58) benign(0.005) TCGA-P3-A5QF-01 19 51532501 51532501 C A KLK12 Intron 0.42 TCGA-P3-A5QF-01 19 52146448 52146448 C A SIGLEC14 3'UTR 0.26 TCGA-P3-A5QF-01 19 54313632 54313632 C T NLRP12 Silent p.T427T 0.43 TCGA-P3-A5QF-01 19 54485522 54485522 G A CACNG8 Missense_Mutation p.E233K 0.25 deleterious(0.04) possibly_damaging(0.566) TCGA-P3-A5QF-01 19 54744365 54744365 C T LILRA6 Missense_Mutation p.R348Q 0.42 tolerated(1) benign(0.022) TCGA-P3-A5QF-01 19 55264048 55264048 C G KIR2DL3 3'UTR 0.40 TCGA-P3-A5QF-01 19 57089213 57089213 G C ZNF470 Missense_Mutation p.Q472H 0.07 deleterious(0) probably_damaging(0.984) TCGA-P3-A5QF-01 19 57646326 57646326 G T ZIM3 Nonsense_Mutation p.S460* 0.37 TCGA-P3-A5QF-01 19 58491454 58491454 G A ZNF606 Silent p.V198V 0.08 TCGA-P3-A5QF-01 19 58850485 58850485 G A ZSCAN22 Silent p.L423L 0.32 TCGA-P3-A5QF-01 19 6375832 6375832 G A PSPN Missense_Mutation p.S10F 0.38 tolerated(0.77) benign(0) TCGA-P3-A5QF-01 19 6585996 6585996 A C CD70 3'UTR 0.46 TCGA-P3-A5QF-01 19 7542149 7542149 G A PEX11G Missense_Mutation p.S222L 0.37 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 19 8953300 8953300 C T MBD3L1 Intron 0.38 TCGA-P3-A5QF-01 19 9065168 9065168 G C MUC16 Silent p.L7426L 0.08 TCGA-P3-A5QF-01 19 9763909 9763909 G C ZNF562 Missense_Mutation p.Q333E 0.34 tolerated(0.82) benign(0.001) TCGA-P3-A5QF-01 1 102290692 102290692 G A OLFM3 Missense_Mutation p.S161F 0.09 deleterious(0) possibly_damaging(0.548) TCGA-P3-A5QF-01 1 109822546 109822546 C G PSRC1 3'UTR 0.55 TCGA-P3-A5QF-01 1 114512633 114512633 C G HIPK1 Missense_Mutation p.P943A 0.30 deleterious(0.01) possibly_damaging(0.776) TCGA-P3-A5QF-01 1 117527432 117527432 C T PTGFRN Silent p.L766L 0.38 TCGA-P3-A5QF-01 1 118628542 118628542 C T SPAG17 Intron 0.36 TCGA-P3-A5QF-01 1 149871805 149871805 G A BOLA1 Missense_Mutation p.E65K 0.11 deleterious(0) probably_damaging(1) TCGA-P3-A5QF-01 1 150528772 150528772 G A ADAMTSL4 Silent p.K502K 0.08 TCGA-P3-A5QF-01 1 150529627 150529627 G C ADAMTSL4 Missense_Mutation p.E621D 0.10 tolerated(0.05) benign(0.035) TCGA-P3-A5QF-01 1 152195636 152195636 C T HRNR Missense_Mutation p.E32K 0.08 probably_damaging(0.997) TCGA-P3-A5QF-01 1 155239300 155239300 C T CLK2 Silent p.R126R 0.09 TCGA-P3-A5QF-01 1 155239404 155239404 C T CLK2 Missense_Mutation p.D92N 0.12 tolerated(0.47) benign(0.385) TCGA-P3-A5QF-01 1 160326073 160326073 C G NCSTN Missense_Mutation p.F525L 0.38 deleterious(0) benign(0.217) TCGA-P3-A5QF-01 1 161188709 161188709 G A FCER1G Silent p.L79L 0.40 TCGA-P3-A5QF-01 1 161201058 161201058 C T NR1I3 Intron 0.07 TCGA-P3-A5QF-01 1 16475057 16475057 C G EPHA2 Missense_Mutation p.E213D 0.07 tolerated(0.67) benign(0.202) TCGA-P3-A5QF-01 1 16475433 16475433 C T EPHA2 Missense_Mutation p.R88Q 0.04 deleterious(0) probably_damaging(1) TCGA-P3-A5QF-01 1 16532755 16532755 G A ARHGEF19 Silent p.A406A 0.24 TCGA-P3-A5QF-01 1 167097674 167097674 G C DUSP27 Missense_Mutation p.E1102D 0.20 deleterious(0) possibly_damaging(0.505) TCGA-P3-A5QF-01 1 17266458 17266458 G A CROCC Missense_Mutation p.E560K 0.25 probably_damaging(0.921) TCGA-P3-A5QF-01 1 175116109 175116109 C G TNN Missense_Mutation p.P1268A 0.08 deleterious(0.02) probably_damaging(0.989) TCGA-P3-A5QF-01 1 175937678 175937678 C G RFWD2 Intron 0.29 TCGA-P3-A5QF-01 1 179851877 179851877 G A TOR1AIP1 Silent p.P80P 0.43 TCGA-P3-A5QF-01 1 180062752 180062752 G C CEP350 Missense_Mutation p.L2504F 0.40 probably_damaging(1) TCGA-P3-A5QF-01 1 180063194 180063194 C T CEP350 Missense_Mutation p.H2652Y 0.39 benign(0.212) TCGA-P3-A5QF-01 1 182555618 182555618 C T RNASEL Silent p.L108L 0.39 TCGA-P3-A5QF-01 1 197071403 197071403 C T ASPM Missense_Mutation p.M2326I 0.40 tolerated(0.2) benign(0.008) TCGA-P3-A5QF-01 1 200943886 200943886 G A KIF21B Silent p.I1590I 0.41 TCGA-P3-A5QF-01 1 200944633 200944633 G A KIF21B Silent p.L1536L 0.34 TCGA-P3-A5QF-01 1 202288300 202288300 C T LGR6 Nonsense_Mutation p.Q957* 0.41 TCGA-P3-A5QF-01 1 202777801 202777801 C G KDM5B 5'UTR 0.21 TCGA-P3-A5QF-01 1 205801748 205801748 C T PM20D1 Silent p.P421P 0.31 TCGA-P3-A5QF-01 1 22332233 22332233 C G CELA3A Missense_Mutation p.I102M 0.31 deleterious(0.04) possibly_damaging(0.873) TCGA-P3-A5QF-01 1 24201678 24201678 G A CNR2 Silent p.L144L 0.07 TCGA-P3-A5QF-01 1 248262837 248262837 C G OR2L13 Missense_Mutation p.L54V 0.05 deleterious(0) probably_damaging(0.998) TCGA-P3-A5QF-01 1 26769239 26769239 G C DHDDS Missense_Mutation p.L66F 0.08 deleterious(0.01) benign(0.225) TCGA-P3-A5QF-01 1 28138698 28138698 G A STX12 Silent p.Q165Q 0.33 TCGA-P3-A5QF-01 1 35227413 35227413 C T GJB4 Silent p.F186F 0.29 TCGA-P3-A5QF-01 1 39500167 39500167 G C NDUFS5 Nonstop_Mutation p.*107Sext*10 0.40 TCGA-P3-A5QF-01 1 40980235 40980235 G C EXO5 Missense_Mutation p.E7Q 0.07 tolerated_low_confidence(0.13) possibly_damaging(0.601) TCGA-P3-A5QF-01 1 41984079 41984079 C T HIVEP3 Missense_Mutation p.E1822K 0.34 benign(0.443) TCGA-P3-A5QF-01 1 42045958 42045958 G C HIVEP3 Nonsense_Mutation p.S1504* 0.05 TCGA-P3-A5QF-01 1 52256608 52256608 C G NRD1 Missense_Mutation p.K1073N 0.50 tolerated(0.13) benign(0.142) TCGA-P3-A5QF-01 1 7797459 7797459 C T CAMTA1 Silent p.L1163L 0.41 TCGA-P3-A5QF-01 1 78163136 78163136 C G USP33 Missense_Mutation p.E899Q 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-P3-A5QF-01 1 78479023 78479023 C T DNAJB4 Missense_Mutation p.S167L 0.36 deleterious(0) possibly_damaging(0.83) TCGA-P3-A5QF-01 1 84649756 84649756 G T PRKACB Nonsense_Mutation p.E139* 0.39 TCGA-P3-A5QF-01 1 87040226 87040226 G A CLCA4 Missense_Mutation p.E491K 0.33 deleterious(0) probably_damaging(0.996) TCGA-P3-A5QF-01 20 20257901 20257901 C T C20orf26 Silent p.L865L 0.42 TCGA-P3-A5QF-01 20 21492988 21492988 C G NKX2-2 Missense_Mutation p.R132P 0.08 deleterious(0) probably_damaging(1) TCGA-P3-A5QF-01 20 23546622 23546622 C T CST9L Missense_Mutation p.E115K 0.23 deleterious(0.04) benign(0.34) TCGA-P3-A5QF-01 20 23615922 23615922 C T CST3 Missense_Mutation p.C109Y 0.21 deleterious(0) probably_damaging(1) TCGA-P3-A5QF-01 20 30037985 30037985 G A DEFB123 3'UTR 0.06 TCGA-P3-A5QF-01 20 31692652 31692652 G A BPIFB4 Missense_Mutation p.D573N 0.29 tolerated(0.25) benign(0.005) TCGA-P3-A5QF-01 20 43977039 43977039 G C SDC4 5'UTR 0.32 TCGA-P3-A5QF-01 20 44697275 44697275 C T NCOA5 Missense_Mutation p.R123K 0.07 deleterious(0.04) unknown(0) TCGA-P3-A5QF-01 20 58569268 58569268 G C CDH26 Intron 0.42 TCGA-P3-A5QF-01 20 60886121 60886121 C T LAMA5 Missense_Mutation p.R3373Q 0.40 possibly_damaging(0.792) TCGA-P3-A5QF-01 20 61959496 61959496 G C COL20A1 Intron 0.36 TCGA-P3-A5QF-01 20 62197488 62197488 C T HELZ2 Missense_Mutation p.R896H 0.47 deleterious(0) probably_damaging(0.998) TCGA-P3-A5QF-01 20 62505152 62505152 C T TPD52L2 Silent p.D99D 0.18 TCGA-P3-A5QF-01 21 27326976 27326976 C G APP Missense_Mutation p.E539Q 0.38 deleterious(0) probably_damaging(0.966) TCGA-P3-A5QF-01 21 33678894 33678894 C G MRAP Intron 0.64 TCGA-P3-A5QF-01 21 34809153 34809153 C G IFNGR2 Missense_Mutation p.Q300E 0.24 tolerated(0.25) benign(0.045) TCGA-P3-A5QF-01 21 40571183 40571183 G C BRWD1 Nonsense_Mutation p.S1720* 0.41 TCGA-P3-A5QF-01 22 18293498 18293498 C G MICAL3 Missense_Mutation p.E1843Q 0.42 probably_damaging(0.996) TCGA-P3-A5QF-01 22 19864601 19864601 G A TXNRD2 3'UTR 0.48 TCGA-P3-A5QF-01 22 20103616 20103616 C T TRMT2A Missense_Mutation p.E182K 0.45 tolerated(0.14) benign(0.134) TCGA-P3-A5QF-01 22 20760525 20760525 C T ZNF74 Missense_Mutation p.S401L 0.04 deleterious(0) probably_damaging(0.991) TCGA-P3-A5QF-01 22 21356258 21356258 C G THAP7 5'UTR 0.67 TCGA-P3-A5QF-01 22 23029682 23029682 G A IGLV3-25 Missense_Mutation p.G95E 0.31 deleterious(0.02) possibly_damaging(0.85) TCGA-P3-A5QF-01 22 24125595 24125595 C T MMP11 Intron 0.41 TCGA-P3-A5QF-01 22 30125495 30125495 C T CABP7 Silent p.I195I 0.50 TCGA-P3-A5QF-01 22 32097639 32097639 C A PRR14L Intron 0.24 TCGA-P3-A5QF-01 22 32179890 32179890 C T DEPDC5 Intron 0.30 TCGA-P3-A5QF-01 22 35463264 35463264 G A ISX Missense_Mutation p.A62T 0.29 tolerated(0.33) benign(0.005) TCGA-P3-A5QF-01 22 42538841 42538841 C G NDUFA6-AS1 3'Flank 0.49 TCGA-P3-A5QF-01 22 46746283 46746283 C T TRMU Silent p.L192L 0.49 TCGA-P3-A5QF-01 22 46776737 46776737 C T CELSR1 Missense_Mutation p.E2402K 0.20 deleterious(0.04) probably_damaging(0.995) TCGA-P3-A5QF-01 22 47095252 47095252 C T CERK Missense_Mutation p.E301K 0.52 deleterious(0) probably_damaging(0.978) TCGA-P3-A5QF-01 22 50719804 50719804 G T PLXNB2 Missense_Mutation p.S1216Y 0.48 tolerated(0.77) possibly_damaging(0.646) TCGA-P3-A5QF-01 2 100029249 100029249 C T REV1 Missense_Mutation p.E706K 0.48 deleterious(0) probably_damaging(0.972) TCGA-P3-A5QF-01 2 101609899 101609899 G A NPAS2 Silent p.Q734Q 0.50 TCGA-P3-A5QF-01 2 107041152 107041152 C T RGPD3 Missense_Mutation p.E1091K 0.07 tolerated(0.6) benign(0.018) TCGA-P3-A5QF-01 2 114004387 114004387 G T PAX8 Nonsense_Mutation p.C45* 0.06 TCGA-P3-A5QF-01 2 118715997 118715997 G A CCDC93 Missense_Mutation p.R317W 0.09 deleterious(0) possibly_damaging(0.716) TCGA-P3-A5QF-01 2 128341887 128341887 G A MYO7B Missense_Mutation p.E512K 0.15 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 2 131803007 131803007 G A ARHGEF4 Missense_Mutation p.G637R 0.44 tolerated(0.11) possibly_damaging(0.468) TCGA-P3-A5QF-01 2 133542579 133542579 G A NCKAP5 Missense_Mutation p.S602L 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-P3-A5QF-01 2 135744550 135744550 G C MAP3K19 Missense_Mutation p.S631C 0.07 tolerated(0.08) probably_damaging(0.959) TCGA-P3-A5QF-01 2 153482074 153482074 G C FMNL2 Missense_Mutation p.E654Q 0.37 possibly_damaging(0.607) TCGA-P3-A5QF-01 2 160639928 160639928 G C LY75-CD302 Silent p.L1681L 0.12 TCGA-P3-A5QF-01 2 164466821 164466821 C T FIGN Silent p.L507L 0.09 TCGA-P3-A5QF-01 2 171687552 171687552 G C GAD1 Missense_Mutation p.D133H 0.44 deleterious(0) possibly_damaging(0.534) TCGA-P3-A5QF-01 2 178097345 178097345 C A NFE2L2 Intron 0.17 TCGA-P3-A5QF-01 2 178098810 178098810 C T NFE2L2 Missense_Mutation p.E79K 0.10 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 2 179429333 179429333 G A TTN Missense_Mutation p.R27176C 0.48 TCGA-P3-A5QF-01 2 179451406 179451406 C G TTN Missense_Mutation p.E21408Q 0.38 TCGA-P3-A5QF-01 2 179451488 179451488 C G TTN Missense_Mutation p.K21380N 0.28 TCGA-P3-A5QF-01 2 179614673 179614673 C T TTN Intron 0.31 TCGA-P3-A5QF-01 2 179615276 179615276 C T TTN Intron 0.48 TCGA-P3-A5QF-01 2 179615282 179615282 C T TTN Intron 0.45 TCGA-P3-A5QF-01 2 179615417 179615417 C A TTN Intron 0.36 TCGA-P3-A5QF-01 2 179615864 179615864 C T TTN Intron 0.41 TCGA-P3-A5QF-01 2 187370271 187370271 G C ZC3H15 Missense_Mutation p.E271Q 0.43 tolerated(0.45) benign(0.01) TCGA-P3-A5QF-01 2 197860089 197860089 G C ANKRD44 3'UTR 0.48 TCGA-P3-A5QF-01 2 198367797 198367797 G C HSPE1 Missense_Mutation p.G68A 0.08 deleterious(0) probably_damaging(0.942) TCGA-P3-A5QF-01 2 206659508 206659508 C T NRP2 Missense_Mutation p.S841F 0.39 tolerated(0.06) benign(0.033) TCGA-P3-A5QF-01 2 207427003 207427003 C T ADAM23 Missense_Mutation p.S444F 0.38 deleterious(0.02) probably_damaging(0.917) TCGA-P3-A5QF-01 2 217293450 217293450 G A SMARCAL1 Missense_Mutation p.E427K 0.35 tolerated(0.93) benign(0.002) TCGA-P3-A5QF-01 2 217543630 217543630 C T IGFBP5 Silent p.E170E 0.35 TCGA-P3-A5QF-01 2 220337794 220337794 G A SPEG Missense_Mutation p.E1375K 0.51 possibly_damaging(0.65) TCGA-P3-A5QF-01 2 228176579 228176579 G C COL4A3 Missense_Mutation p.R1669T 0.26 unknown(0) TCGA-P3-A5QF-01 2 233677127 233677127 C T GIGYF2 Missense_Mutation p.S699L 0.07 possibly_damaging(0.87) TCGA-P3-A5QF-01 2 240969358 240969358 G C OR6B2 Missense_Mutation p.I163M 0.28 tolerated(0.07) benign(0.371) TCGA-P3-A5QF-01 2 242127951 242127951 G A ANO7 5'UTR 0.44 TCGA-P3-A5QF-01 2 25967008 25967008 C T ASXL2 Missense_Mutation p.G733E 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-P3-A5QF-01 2 37287853 37287853 G A HEATR5B Silent p.L574L 0.50 TCGA-P3-A5QF-01 2 38302190 38302190 G A CYP1B1 Silent p.F114F 0.25 TCGA-P3-A5QF-01 2 48807989 48807989 C G STON1-GTF2A1L Missense_Mutation p.P73A 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-P3-A5QF-01 2 48956296 48956296 C G LHCGR Missense_Mutation p.E102Q 0.09 tolerated(0.15) probably_damaging(0.992) TCGA-P3-A5QF-01 2 56419832 56419832 A T CCDC85A Missense_Mutation p.K166M 0.34 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 2 60688601 60688601 G A BCL11A Silent p.N482N 0.17 TCGA-P3-A5QF-01 2 61632948 61632948 C G USP34 Missense_Mutation p.W149C 0.33 deleterious(0) probably_damaging(0.977) TCGA-P3-A5QF-01 2 61633028 61633028 C G USP34 Missense_Mutation p.E123Q 0.38 tolerated(0.27) benign(0.001) TCGA-P3-A5QF-01 2 69092670 69092670 C T BMP10 3'UTR 0.30 TCGA-P3-A5QF-01 2 69092700 69092700 C T BMP10 3'UTR 0.33 TCGA-P3-A5QF-01 2 77745691 77745691 G A LRRTM4 Missense_Mutation p.S435L 0.10 deleterious(0) possibly_damaging(0.718) TCGA-P3-A5QF-01 2 77745701 77745701 G C LRRTM4 Missense_Mutation p.L432V 0.09 deleterious(0) probably_damaging(0.996) TCGA-P3-A5QF-01 2 85826074 85826074 C A TMEM150A 3'UTR 0.16 TCGA-P3-A5QF-01 2 96690236 96690236 G A GPAT2 Silent p.L536L 0.34 TCGA-P3-A5QF-01 3 110830990 110830990 G C PVRL3 Missense_Mutation p.E92Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-P3-A5QF-01 3 112299571 112299571 G C SLC35A5 Missense_Mutation p.D203H 0.30 tolerated(0.1) benign(0.082) TCGA-P3-A5QF-01 3 119176976 119176976 A G TMEM39A Silent p.F75F 0.20 TCGA-P3-A5QF-01 3 122247306 122247306 C G PARP9 Missense_Mutation p.E824Q 0.57 deleterious(0.03) benign(0.04) TCGA-P3-A5QF-01 3 122259339 122259339 C T PARP9 Missense_Mutation p.R617Q 0.50 tolerated(1) benign(0.001) TCGA-P3-A5QF-01 3 122525786 122525786 C G DIRC2 Missense_Mutation p.I142M 0.07 tolerated(0.22) benign(0) TCGA-P3-A5QF-01 3 12447412 12447412 G C PPARG Missense_Mutation p.E217D 0.32 deleterious(0) possibly_damaging(0.831) TCGA-P3-A5QF-01 3 129546877 129546877 C T TMCC1 Missense_Mutation p.M115I 0.50 tolerated_low_confidence(0.54) benign(0.005) TCGA-P3-A5QF-01 3 130720094 130720094 C T ATP2C1 Missense_Mutation p.S921L 0.19 deleterious(0.03) possibly_damaging(0.794) TCGA-P3-A5QF-01 3 134265047 134265047 C G CEP63 Silent p.L282L 0.57 TCGA-P3-A5QF-01 3 137893649 137893649 G C DBR1 5'UTR 0.44 TCGA-P3-A5QF-01 3 14223081 14223081 G T LSM3 Nonsense_Mutation p.E15* 0.05 TCGA-P3-A5QF-01 3 157131748 157131748 C T VEPH1 Silent p.L276L 0.63 TCGA-P3-A5QF-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.64 deleterious(0.02) probably_damaging(0.959) TCGA-P3-A5QF-01 3 182817236 182817236 G C MCCC1 5'UTR 0.19 TCGA-P3-A5QF-01 3 183679424 183679424 C A ABCC5 Nonsense_Mutation p.E752* 0.61 TCGA-P3-A5QF-01 3 183681353 183681353 C T ABCC5 Silent p.L685L 0.52 TCGA-P3-A5QF-01 3 185183554 185183554 G C MAP3K13 Missense_Mutation p.E470Q 0.03 tolerated(0.07) possibly_damaging(0.691) TCGA-P3-A5QF-01 3 185184658 185184658 G A MAP3K13 Missense_Mutation p.R517Q 0.04 tolerated(0.07) benign(0.1) TCGA-P3-A5QF-01 3 190106165 190106165 C T CLDN16 Missense_Mutation p.S86F 0.61 deleterious(0) probably_damaging(0.988) TCGA-P3-A5QF-01 3 190993061 190993061 G A UTS2B Missense_Mutation p.S105F 0.22 deleterious(0.01) possibly_damaging(0.705) TCGA-P3-A5QF-01 3 196612250 196612250 C G SENP5 Missense_Mutation p.I66M 0.24 deleterious_low_confidence(0) benign(0.219) TCGA-P3-A5QF-01 3 30733072 30733072 C T TGFBR2 Missense_Mutation p.S587F 0.48 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-P3-A5QF-01 3 33425659 33425659 A G FBXL2 Missense_Mutation p.Q377R 0.40 tolerated(0.06) probably_damaging(0.998) TCGA-P3-A5QF-01 3 38912184 38912184 C G SCN11A Missense_Mutation p.E1271Q 0.38 tolerated(0.08) benign(0.175) TCGA-P3-A5QF-01 3 44684748 44684748 G A ZNF197 Missense_Mutation p.R709Q 0.36 tolerated(0.52) benign(0.002) TCGA-P3-A5QF-01 3 50326727 50326727 C T IFRD2 Missense_Mutation p.E346K 0.50 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 3 53263450 53263450 C T TKT Silent p.V378V 0.76 TCGA-P3-A5QF-01 3 53905447 53905447 G A ACTR8 Missense_Mutation p.S460F 0.51 deleterious(0.03) possibly_damaging(0.748) TCGA-P3-A5QF-01 3 99567229 99567229 G A FILIP1L Silent p.N1097N 0.05 TCGA-P3-A5QF-01 4 103578858 103578858 G A MANBA Missense_Mutation p.S562F 0.44 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 4 13338870 13338870 G A HSP90AB2P RNA 0.11 TCGA-P3-A5QF-01 4 13602712 13602712 C T BOD1L1 Missense_Mutation p.E1938K 0.29 benign(0.025) TCGA-P3-A5QF-01 4 149356742 149356742 G A NR3C2 Missense_Mutation p.S424L 0.07 tolerated_low_confidence(0.31) possibly_damaging(0.587) TCGA-P3-A5QF-01 4 149356782 149356782 G C NR3C2 Missense_Mutation p.L411V 0.06 deleterious_low_confidence(0.02) benign(0.015) TCGA-P3-A5QF-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.05 deleterious(0.03) probably_damaging(1) TCGA-P3-A5QF-01 4 155219431 155219431 C G DCHS2 Missense_Mutation p.C1557S 0.29 tolerated(0.2) benign(0.207) TCGA-P3-A5QF-01 4 155226327 155226327 C G DCHS2 Missense_Mutation p.E1318Q 0.31 tolerated(0.43) benign(0.02) TCGA-P3-A5QF-01 4 156710944 156710944 G C GUCY1B3 Missense_Mutation p.E126Q 0.31 tolerated(0.44) benign(0.01) TCGA-P3-A5QF-01 4 156710980 156710980 G C GUCY1B3 Missense_Mutation p.E138Q 0.30 tolerated(0.09) benign(0.087) TCGA-P3-A5QF-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.28 deleterious(0.01) possibly_damaging(0.594) TCGA-P3-A5QF-01 4 184210761 184210761 G C WWC2 Missense_Mutation p.Q1119H 0.38 tolerated(0.08) possibly_damaging(0.841) TCGA-P3-A5QF-01 4 185940936 185940936 G C HELT Missense_Mutation p.E141D 0.05 deleterious(0) probably_damaging(0.998) TCGA-P3-A5QF-01 4 38698797 38698797 C G KLF3 Missense_Mutation p.I317M 0.38 deleterious(0) benign(0.3) TCGA-P3-A5QF-01 4 39184036 39184036 C G WDR19 5'UTR 0.42 TCGA-P3-A5QF-01 4 436773 436773 G T ZNF721 Missense_Mutation p.H495N 0.41 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 4 47548694 47548694 G C ATP10D Missense_Mutation p.D484H 0.46 tolerated(0.19) benign(0.023) TCGA-P3-A5QF-01 4 48559474 48559474 G T FRYL Missense_Mutation p.A1374E 0.30 deleterious(0) probably_damaging(0.995) TCGA-P3-A5QF-01 4 57204723 57204723 A G AASDH Missense_Mutation p.W1048R 0.40 deleterious(0) possibly_damaging(0.76) TCGA-P3-A5QF-01 4 68930409 68930409 C T TMPRSS11F Missense_Mutation p.D337N 0.41 tolerated(1) probably_damaging(0.954) TCGA-P3-A5QF-01 4 73148854 73148854 C G ADAMTS3 Nonstop_Mutation p.*1206Sext*32 0.07 TCGA-P3-A5QF-01 4 79297016 79297016 C G FRAS1 Missense_Mutation p.S1092C 0.27 benign(0.353) TCGA-P3-A5QF-01 4 79362387 79362387 G A FRAS1 Silent p.Q1867Q 0.30 TCGA-P3-A5QF-01 4 83348705 83348705 C A HNRNPDL Nonsense_Mutation p.E263* 0.30 TCGA-P3-A5QF-01 4 83350589 83350589 G T HNRNPDL Silent p.L85L 0.50 TCGA-P3-A5QF-01 4 85414537 85414537 C G NKX6-1 Missense_Mutation p.E337Q 0.41 deleterious(0) unknown(0) TCGA-P3-A5QF-01 5 132270026 132270026 G C AFF4 Nonsense_Mutation p.S244* 0.68 TCGA-P3-A5QF-01 5 140626769 140626769 G A PCDHB15 Silent p.L541L 0.65 TCGA-P3-A5QF-01 5 147020328 147020328 G T JAKMIP2 Nonsense_Mutation p.S447* 0.47 TCGA-P3-A5QF-01 5 148719642 148719642 G A AFAP1L1 3'UTR 0.61 TCGA-P3-A5QF-01 5 150276386 150276386 C G ZNF300 Missense_Mutation p.E155Q 0.49 tolerated(0.2) benign(0.015) TCGA-P3-A5QF-01 5 150276465 150276465 C T ZNF300 Silent p.L128L 0.30 TCGA-P3-A5QF-01 5 150922984 150922984 G A FAT2 Silent p.F2568F 0.58 TCGA-P3-A5QF-01 5 16671030 16671039 GAACCTGGAG - MYO10 Frame_Shift_Del p.Q1828Lfs*55 0.25 TCGA-P3-A5QF-01 5 176710792 176710792 G A NSD1 Missense_Mutation p.R2005Q 0.60 deleterious(0) probably_damaging(0.999) TCGA-P3-A5QF-01 5 3599488 3599488 C G IRX1 Silent p.L142L 0.38 TCGA-P3-A5QF-01 5 56174863 56174863 C G MAP3K1 Missense_Mutation p.I674M 0.14 tolerated(0.12) benign(0.009) TCGA-P3-A5QF-01 5 77298846 77298846 C T AP3B1 Silent p.L1055L 0.65 TCGA-P3-A5QF-01 5 7868154 7868154 C T FASTKD3 Missense_Mutation p.D15N 0.43 tolerated(0.17) benign(0.014) TCGA-P3-A5QF-01 5 79741145 79741145 T C ZFYVE16 Missense_Mutation p.V882A 0.79 deleterious(0.02) benign(0.079) TCGA-P3-A5QF-01 5 80604854 80604854 G A ZCCHC9 Missense_Mutation p.D209N 0.58 tolerated(0.27) benign(0.065) TCGA-P3-A5QF-01 6 12122536 12122536 C T HIVEP1 Silent p.I836I 0.38 TCGA-P3-A5QF-01 6 127767753 127767753 C T KIAA0408 Missense_Mutation p.E571K 0.44 deleterious(0.03) benign(0.084) TCGA-P3-A5QF-01 6 155561820 155561820 G A TIAM2 Missense_Mutation p.D1109N 0.47 deleterious(0) possibly_damaging(0.722) TCGA-P3-A5QF-01 6 167343147 167343147 C T RNASET2 Missense_Mutation p.E234K 0.25 tolerated(0.86) benign(0.002) TCGA-P3-A5QF-01 6 20488383 20488383 G C E2F3 Missense_Mutation p.E347Q 0.44 deleterious(0) possibly_damaging(0.906) TCGA-P3-A5QF-01 6 24572864 24572864 C T KIAA0319 Silent p.L599L 0.26 TCGA-P3-A5QF-01 6 26217594 26217594 G A HIST1H2AE Silent p.%3D 0.24 TCGA-P3-A5QF-01 6 26217636 26217636 G A HIST1H2AE 3'UTR 0.31 TCGA-P3-A5QF-01 6 28097584 28097584 C T ZSCAN16 Silent p.F301F 0.30 TCGA-P3-A5QF-01 6 28228324 28228324 T C NKAPL Missense_Mutation p.V392A 0.31 deleterious(0) probably_damaging(0.987) TCGA-P3-A5QF-01 6 30856492 30856492 G C DDR1 5'UTR 0.32 TCGA-P3-A5QF-01 6 30891224 30891224 C T VARS2 Missense_Mutation p.S833L 0.49 tolerated(0.14) benign(0.102) TCGA-P3-A5QF-01 6 31612823 31612823 C T BAG6 Silent p.P429P 0.39 TCGA-P3-A5QF-01 6 31763011 31763011 G A VARS 5'UTR 0.44 TCGA-P3-A5QF-01 6 32017905 32017905 C T TNXB 5'Flank 0.29 TCGA-P3-A5QF-01 6 32137686 32137686 G A AGPAT1 Intron 0.35 TCGA-P3-A5QF-01 6 33263456 33263456 G C RGL2 Silent p.L283L 0.27 TCGA-P3-A5QF-01 6 33646584 33646584 G C ITPR3 Missense_Mutation p.V1314L 0.37 tolerated(0.06) possibly_damaging(0.547) TCGA-P3-A5QF-01 6 36976630 36976630 G A FGD2 Missense_Mutation p.R30K 0.25 tolerated_low_confidence(0.34) benign(0.002) TCGA-P3-A5QF-01 6 4073712 4073712 C T FAM217A Silent p.L63L 0.34 TCGA-P3-A5QF-01 6 41126342 41126342 C T TREM2 3'UTR 0.44 TCGA-P3-A5QF-01 6 4128056 4128056 C T ECI2 Missense_Mutation p.E171K 0.36 tolerated(0.07) possibly_damaging(0.885) TCGA-P3-A5QF-01 6 43403588 43403588 C T ABCC10 Missense_Mutation p.R570W 0.41 deleterious(0) probably_damaging(0.991) TCGA-P3-A5QF-01 6 46190752 46190752 G C RCAN2 3'UTR 0.41 TCGA-P3-A5QF-01 6 56347540 56347540 C G DST Missense_Mutation p.E4492Q 0.38 probably_damaging(0.913) TCGA-P3-A5QF-01 6 56458919 56458919 C G DST Missense_Mutation p.E1467Q 0.05 possibly_damaging(0.72) TCGA-P3-A5QF-01 6 75818864 75818864 G C COL12A1 Nonsense_Mutation p.S2657* 0.51 TCGA-P3-A5QF-01 6 7582950 7582950 A G DSP Missense_Mutation p.I1819V 0.41 benign(0.1) TCGA-P3-A5QF-01 6 7727793 7727793 G C BMP6 Missense_Mutation p.S202T 0.47 tolerated(0.57) benign(0.057) TCGA-P3-A5QF-01 6 78172113 78172113 C T HTR1B Silent p.V336V 0.25 TCGA-P3-A5QF-01 6 84567085 84567085 G A RIPPLY2 Missense_Mutation p.E122K 0.31 deleterious(0.05) possibly_damaging(0.453) TCGA-P3-A5QF-01 7 102938036 102938036 C G PMPCB Intron 0.29 TCGA-P3-A5QF-01 7 11209061 11209061 G A PHF14 Missense_Mutation p.E646K 0.36 tolerated_low_confidence(0.07) benign(0.008) TCGA-P3-A5QF-01 7 116962987 116962987 G A WNT2 Silent p.L19L 0.39 TCGA-P3-A5QF-01 7 119914796 119914796 G A KCND2 Missense_Mutation p.R37K 0.33 tolerated(0.4) benign(0.001) TCGA-P3-A5QF-01 7 122130254 122130254 C T CADPS2 Missense_Mutation p.R578K 0.07 tolerated(0.11) benign(0.43) TCGA-P3-A5QF-01 7 123270074 123270074 C T ASB15 Missense_Mutation p.R499C 0.31 deleterious(0.03) benign(0.397) TCGA-P3-A5QF-01 7 132193417 132193417 G C PLXNA4 Silent p.L12L 0.59 TCGA-P3-A5QF-01 7 142250855 142250855 G A TRBV6-4 Silent p.L64L 0.40 TCGA-P3-A5QF-01 7 149484608 149484608 C T SSPO RNA 0.16 TCGA-P3-A5QF-01 7 149529910 149529910 G A SSPO RNA 0.36 TCGA-P3-A5QF-01 7 156436532 156436532 G C RNF32 5'UTR 0.08 TCGA-P3-A5QF-01 7 17843204 17843204 C G SNX13 Splice_Site p.X689_splice 0.53 TCGA-P3-A5QF-01 7 56148918 56148918 C G PHKG1 Missense_Mutation p.E363D 0.30 tolerated(0.28) probably_damaging(0.91) TCGA-P3-A5QF-01 7 66456169 66456169 C T SBDS Silent p.L193L 0.33 TCGA-P3-A5QF-01 7 81667473 81667473 C T CACNA2D1 Missense_Mutation p.D320N 0.45 deleterious(0.02) benign(0.053) TCGA-P3-A5QF-01 7 90042712 90042712 C T CLDN12 Missense_Mutation p.S241L 0.37 deleterious_low_confidence(0.01) benign(0.036) TCGA-P3-A5QF-01 7 92760793 92760793 C T SAMD9L Missense_Mutation p.D1498N 0.30 tolerated(0.19) benign(0.001) TCGA-P3-A5QF-01 7 98579528 98579528 G A TRRAP Missense_Mutation p.R2917H 0.22 probably_damaging(0.953) TCGA-P3-A5QF-01 8 104342132 104342132 G A FZD6 Missense_Mutation p.M597I 0.27 tolerated_low_confidence(0.41) benign(0) TCGA-P3-A5QF-01 8 121468867 121468867 C G MTBP Nonsense_Mutation p.S235* 0.31 TCGA-P3-A5QF-01 8 144992778 144992778 C A PLEC Silent p.V3874V 0.36 TCGA-P3-A5QF-01 8 145758701 145758701 C T ARHGAP39 Silent p.K899K 0.40 TCGA-P3-A5QF-01 8 2054045 2054045 C T MYOM2 Silent p.I916I 0.38 TCGA-P3-A5QF-01 8 25191669 25191669 G C DOCK5 Missense_Mutation p.E717Q 0.06 deleterious(0.01) probably_damaging(0.961) TCGA-P3-A5QF-01 8 30702870 30702870 T G TEX15 Missense_Mutation p.S1222R 0.52 deleterious(0.05) benign(0.074) TCGA-P3-A5QF-01 8 37602323 37602323 G C ERLIN2 Intron 0.48 TCGA-P3-A5QF-01 8 37603160 37603160 G T ERLIN2 Intron 0.25 TCGA-P3-A5QF-01 8 408518 408518 G C FBXO25 Missense_Mutation p.K270N 0.08 deleterious(0) possibly_damaging(0.885) TCGA-P3-A5QF-01 8 53084658 53084658 C G ST18 Missense_Mutation p.E255Q 0.09 tolerated(0.14) benign(0.017) TCGA-P3-A5QF-01 8 57078869 57078869 G A PLAG1 Missense_Mutation p.S479L 0.37 deleterious(0.04) possibly_damaging(0.879) TCGA-P3-A5QF-01 8 63951271 63951271 C T GGH Silent p.A19A 0.67 TCGA-P3-A5QF-01 8 92346549 92346549 C A SLC26A7 Silent p.I223I 0.42 TCGA-P3-A5QF-01 9 100328171 100328171 G A TMOD1 Silent p.L220L 0.07 TCGA-P3-A5QF-01 9 109692023 109692023 G C ZNF462 Missense_Mutation p.D1944H 0.07 probably_damaging(0.947) TCGA-P3-A5QF-01 9 111624686 111624686 C G ACTL7A Silent p.L28L 0.08 TCGA-P3-A5QF-01 9 111745477 111745477 C G CTNNAL1 Missense_Mutation p.G283A 0.33 tolerated(0.1) benign(0.15) TCGA-P3-A5QF-01 9 114490053 114490053 G A C9orf84 Missense_Mutation p.S501L 0.36 deleterious(0.04) benign(0.054) TCGA-P3-A5QF-01 9 114490173 114490173 G C C9orf84 Missense_Mutation p.A461G 0.32 tolerated(0.44) benign(0.05) TCGA-P3-A5QF-01 9 115216390 115216390 C G HSDL2 Silent p.L321L 0.35 TCGA-P3-A5QF-01 9 117400877 117400877 G T C9orf91 Silent p.V240V 0.38 TCGA-P3-A5QF-01 9 120474686 120474686 G A TLR4 Missense_Mutation p.E94K 0.35 deleterious(0.01) benign(0.239) TCGA-P3-A5QF-01 9 125042832 125042832 C G MRRF Missense_Mutation p.L99V 0.09 deleterious(0) probably_damaging(0.944) TCGA-P3-A5QF-01 9 125154628 125154628 G A PTGS1 Silent p.G535G 0.34 TCGA-P3-A5QF-01 9 131772411 131772411 G C SH3GLB2 Missense_Mutation p.I242M 0.30 deleterious(0) probably_damaging(0.973) TCGA-P3-A5QF-01 9 136643922 136643922 C G VAV2 Missense_Mutation p.E618Q 0.48 deleterious(0.01) probably_damaging(0.912) TCGA-P3-A5QF-01 9 137987761 137987761 G C OLFM1 Missense_Mutation p.D100H 0.05 deleterious(0) benign(0.152) TCGA-P3-A5QF-01 9 138712793 138712793 G A CAMSAP1 Silent p.L1238L 0.42 TCGA-P3-A5QF-01 9 15457957 15457957 G C SNAPC3 Splice_Site p.X327_splice 0.47 TCGA-P3-A5QF-01 9 33933498 33933498 G A UBAP2 Nonsense_Mutation p.Q700* 0.35 TCGA-P3-A5QF-01 9 37429760 37429760 C T GRHPR Silent p.F175F 0.33 TCGA-P3-A5QF-01 9 3879429 3879429 C G GLIS3 Missense_Mutation p.E765D 0.06 tolerated(0.22) probably_damaging(0.99) TCGA-P3-A5QF-01 9 3879431 3879431 C G GLIS3 Missense_Mutation p.E765Q 0.43 tolerated(0.06) probably_damaging(0.995) TCGA-P3-A5QF-01 9 5044417 5044417 G A JAK2 Missense_Mutation p.R122H 0.30 tolerated(0.21) benign(0) TCGA-P3-A5QF-01 9 74360459 74360459 C T TMEM2 Missense_Mutation p.R170K 0.26 tolerated(1) benign(0.002) TCGA-P3-A5QF-01 9 94486339 94486339 G T ROR2 Missense_Mutation p.P813T 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-P3-A5QF-01 9 95062203 95062203 C T NOL8 Missense_Mutation p.E1091K 0.03 tolerated(0.07) benign(0.081) TCGA-P3-A5QF-01 9 95485048 95485048 C T BICD2 Missense_Mutation p.D166N 0.28 deleterious(0) probably_damaging(0.987) TCGA-P3-A5QF-01 9 96847541 96847541 G C PTPDC1 Missense_Mutation p.E83Q 0.06 tolerated(0.3) benign(0.026) TCGA-P3-A5QF-01 9 98677984 98677984 C G ERCC6L2 Missense_Mutation p.H286D 0.36 deleterious(0) probably_damaging(1) TCGA-P3-A5QF-01 X 151303324 151303324 C T MAGEA10 Missense_Mutation p.D257N 0.70 deleterious(0.04) benign(0.216) TCGA-P3-A5QF-01 X 151303696 151303696 C G MAGEA10 Missense_Mutation p.E133Q 0.65 tolerated(0.45) benign(0.27) TCGA-P3-A5QF-01 X 151304050 151304050 C G MAGEA10 Missense_Mutation p.D15H 0.65 deleterious(0.04) possibly_damaging(0.796) TCGA-P3-A5QF-01 X 153207040 153207040 C G RENBP Missense_Mutation p.R279P 0.44 deleterious(0.02) probably_damaging(0.91) TCGA-P3-A5QF-01 X 15682904 15682904 C G TMEM27 5'UTR 0.81 TCGA-P3-A5QF-01 X 20146364 20146364 C G EIF1AX 3'UTR 0.68 TCGA-P3-A5QF-01 X 3228540 3228540 C T MXRA5 Silent p.G2568G 0.89 TCGA-P3-A5QF-01 X 3228714 3228714 C G MXRA5 Missense_Mutation p.K2510N 0.80 tolerated(0.08) possibly_damaging(0.821) TCGA-P3-A5QF-01 X 32536035 32536035 C G DMD Intron 0.17 TCGA-P3-A5QF-01 X 41088907 41088907 C T USP9X Nonsense_Mutation p.Q2436* 0.71 TCGA-P3-A5QF-01 X 47069517 47069517 G C UBA1 Missense_Mutation p.D732H 0.64 deleterious(0.01) benign(0.025) TCGA-P3-A5QF-01 X 47836981 47836981 C A ZNF182 Missense_Mutation p.D169Y 0.59 tolerated(0.9) possibly_damaging(0.629) TCGA-P3-A5QF-01 X 48558860 48558860 G A SUV39H1 Missense_Mutation p.E182K 0.77 tolerated(0.07) benign(0.11) TCGA-P3-A5QF-01 X 49070718 49070718 C G CACNA1F Missense_Mutation p.Q1214H 0.74 deleterious(0) possibly_damaging(0.54) TCGA-P3-A5QF-01 X 49104139 49104139 C G CCDC22 Silent p.L334L 0.90 TCGA-P3-A5QF-01 X 49104913 49104913 C T CCDC22 Nonsense_Mutation p.Q420* 0.84 TCGA-P3-A5QF-01 X 53172528 53172528 G A LINC01155 RNA 0.90 TCGA-P3-A5QF-01 X 73065478 73065478 G A XIST RNA 0.12 TCGA-P3-A5QF-01 X 79945534 79945534 G A BRWD3 Silent p.F1220F 0.67 TCGA-P3-A5QF-01 X 91132073 91132073 A T PCDH11X Silent p.I278I 0.67 TCGA-P3-A5QF-01 X 92926978 92926978 G C NAP1L3 Missense_Mutation p.F442L 1.00 deleterious(0) possibly_damaging(0.787) TCGA-P3-A5QF-01 X 92964593 92964593 G A FAM133A Missense_Mutation p.A59T 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-P3-A6SW-01 10 102289582 102289582 C G NDUFB8 Missense_Mutation p.L9F 0.09 tolerated(0.69) benign(0.089) TCGA-P3-A6SW-01 10 127458964 127458964 G T MMP21 Missense_Mutation p.H392Q 0.08 tolerated(1) benign(0) TCGA-P3-A6SW-01 10 17905587 17905587 G C MRC1L1 Missense_Mutation p.E560Q 0.10 probably_damaging(0.965) TCGA-P3-A6SW-01 10 5925970 5925970 G A ANKRD16 Missense_Mutation p.H217Y 0.10 tolerated(0.09) possibly_damaging(0.491) TCGA-P3-A6SW-01 11 105845108 105845108 G C GRIA4 Missense_Mutation p.L827F 0.13 deleterious(0) probably_damaging(0.996) TCGA-P3-A6SW-01 11 55904917 55904917 G A OR8J3 Missense_Mutation p.S93L 0.06 deleterious(0.05) benign(0.011) TCGA-P3-A6SW-01 11 8457627 8457627 C T STK33 Missense_Mutation p.R336K 0.08 tolerated(0.73) benign(0.004) TCGA-P3-A6SW-01 12 21450358 21450358 G T SLCO1A2 Nonsense_Mutation p.S352* 0.08 TCGA-P3-A6SW-01 12 46123887 46123887 C T ARID2 Silent p.Y51Y 0.11 TCGA-P3-A6SW-01 13 49073886 49073886 A G RCBTB2 Missense_Mutation p.F419L 0.15 deleterious(0) benign(0.158) TCGA-P3-A6SW-01 13 88329213 88329213 G A SLITRK5 Missense_Mutation p.V524I 0.08 tolerated(0.59) benign(0.032) TCGA-P3-A6SW-01 14 23635568 23635568 C G SLC7A8 Missense_Mutation p.K111N 0.10 tolerated(0.07) benign(0.133) TCGA-P3-A6SW-01 14 23874017 23874017 G A MYH6 Missense_Mutation p.A182V 0.13 deleterious(0) probably_damaging(0.973) TCGA-P3-A6SW-01 14 56114740 56114740 C T KTN1 Intron 0.12 TCGA-P3-A6SW-01 14 69522198 69522198 T A DCAF5 Missense_Mutation p.H402L 0.19 deleterious(0.01) probably_damaging(0.958) TCGA-P3-A6SW-01 14 70634946 70634946 G A SLC8A3 Missense_Mutation p.P65L 0.20 deleterious(0) probably_damaging(0.95) TCGA-P3-A6SW-01 15 20170174 20170174 G A IGHV1OR15-9 Missense_Mutation p.P33L 0.09 deleterious(0.01) possibly_damaging(0.726) TCGA-P3-A6SW-01 15 44855253 44855253 T C SPG11 3'UTR 0.14 TCGA-P3-A6SW-01 15 51773096 51773096 G A DMXL2 Silent p.L2069L 0.11 TCGA-P3-A6SW-01 15 86312316 86312316 C T KLHL25 Silent p.P242P 0.14 TCGA-P3-A6SW-01 15 89867078 89867078 G A POLG Nonsense_Mutation p.R709* 0.15 TCGA-P3-A6SW-01 15 91557626 91557626 G A VPS33B Nonsense_Mutation p.R93* 0.07 TCGA-P3-A6SW-01 16 19509316 19509316 C T TMC5 3'UTR 0.10 TCGA-P3-A6SW-01 16 2096334 2096334 G A NTHL1 Missense_Mutation p.P58L 0.17 tolerated(0.25) benign(0.03) TCGA-P3-A6SW-01 16 28854443 28854443 C T TUFM Silent p.L407L 0.10 TCGA-P3-A6SW-01 16 68598113 68598113 G C ZFP90 Missense_Mutation p.E475Q 0.06 deleterious(0.04) benign(0.014) TCGA-P3-A6SW-01 17 33771680 33771680 G A SLFN13 Silent p.P340P 0.07 TCGA-P3-A6SW-01 17 3920783 3920783 G A ZZEF1 Missense_Mutation p.A2628V 0.09 deleterious(0) possibly_damaging(0.611) TCGA-P3-A6SW-01 17 55027263 55027263 G C COIL Missense_Mutation p.S447C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-P3-A6SW-01 17 64961156 64961156 C T CACNG4 Silent p.G43G 0.20 TCGA-P3-A6SW-01 19 11943646 11943646 C T ZNF440 Missense_Mutation p.S552L 0.14 tolerated(0.08) benign(0.04) TCGA-P3-A6SW-01 19 1218445 1218445 A T STK11 Missense_Mutation p.H107L 0.09 deleterious(0) probably_damaging(1) TCGA-P3-A6SW-01 19 14076339 14076339 G A RFX1 Silent p.I711I 0.09 TCGA-P3-A6SW-01 19 14501807 14501807 A T CD97 Missense_Mutation p.S88C 0.11 deleterious(0) probably_damaging(0.989) TCGA-P3-A6SW-01 19 18368439 18368439 G A KIAA1683 Missense_Mutation p.R1219C 0.20 deleterious(0) benign(0.353) TCGA-P3-A6SW-01 19 33464993 33464993 G A C19orf40 Missense_Mutation p.V91I 0.07 tolerated(0.07) probably_damaging(0.988) TCGA-P3-A6SW-01 19 51010853 51010853 C T JOSD2 Missense_Mutation p.A84T 0.05 tolerated(0.09) probably_damaging(0.999) TCGA-P3-A6SW-01 19 57086066 57086066 G T ZNF470 Missense_Mutation p.V83L 0.08 tolerated(0.2) benign(0.005) TCGA-P3-A6SW-01 1 10720504 10720504 C T CASZ1 Missense_Mutation p.E199K 0.10 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-P3-A6SW-01 1 111965617 111965617 C T OVGP1 Silent p.L180L 0.08 TCGA-P3-A6SW-01 1 117484384 117484384 C T PTGFRN Nonsense_Mutation p.R33* 0.13 TCGA-P3-A6SW-01 1 12569100 12569100 G A VPS13D 3'UTR 0.23 TCGA-P3-A6SW-01 1 151345138 151345138 G C SELENBP1 5'UTR 0.11 TCGA-P3-A6SW-01 1 152083634 152083634 C G TCHH Missense_Mutation p.E687Q 0.11 unknown(0) TCGA-P3-A6SW-01 1 152275878 152275878 C T FLG Silent p.S3828S 0.08 TCGA-P3-A6SW-01 1 156100425 156100425 G C LMNA Missense_Mutation p.G125A 0.11 tolerated(0.6) benign(0.029) TCGA-P3-A6SW-01 1 173952700 173952702 CTT - RC3H1 In_Frame_Del p.E149del 0.24 TCGA-P3-A6SW-01 1 205238090 205238090 G A TMCC2 Missense_Mutation p.D254N 0.04 tolerated(0.09) probably_damaging(0.954) TCGA-P3-A6SW-01 1 207287510 207287510 C T C4BPA Missense_Mutation p.R70C 0.05 deleterious(0.03) possibly_damaging(0.592) TCGA-P3-A6SW-01 1 237037072 237037072 G A MTR Splice_Site p.X802_splice 0.06 TCGA-P3-A6SW-01 1 39806219 39806219 G T MACF1 Intron 0.09 TCGA-P3-A6SW-01 1 44086606 44086606 A T PTPRF Missense_Mutation p.Q1821L 0.12 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SW-01 1 44456148 44456148 G A B4GALT2 3'UTR 0.05 TCGA-P3-A6SW-01 20 60895805 60895805 G A LAMA5 Missense_Mutation p.A2213V 0.15 possibly_damaging(0.781) TCGA-P3-A6SW-01 21 33060662 33060663 - G SCAF4 Frame_Shift_Ins p.P668Sfs*106 0.19 TCGA-P3-A6SW-01 21 43912900 43912900 G A RSPH1 Missense_Mutation p.T81I 0.04 tolerated(0.4) benign(0.057) TCGA-P3-A6SW-01 2 113676262 113676262 G A IL37 Missense_Mutation p.C178Y 0.05 tolerated(0.38) possibly_damaging(0.46) TCGA-P3-A6SW-01 2 141283496 141283496 G A LRP1B Missense_Mutation p.S2648F 0.07 possibly_damaging(0.788) TCGA-P3-A6SW-01 2 166850813 166850813 C G SCN1A Missense_Mutation p.Q1565H 0.11 deleterious(0.02) probably_damaging(0.978) TCGA-P3-A6SW-01 2 168102911 168102911 A T XIRP2 Missense_Mutation p.E1670V 0.06 possibly_damaging(0.875) TCGA-P3-A6SW-01 2 168104131 168104131 G A XIRP2 Missense_Mutation p.E2077K 0.06 benign(0.009) TCGA-P3-A6SW-01 2 19553234 19553234 G C OSR1 Silent p.L111L 0.12 TCGA-P3-A6SW-01 2 200188670 200188670 C T SATB2 Silent p.S466S 0.13 TCGA-P3-A6SW-01 2 44547744 44547744 C T SLC3A1 Missense_Mutation p.S675F 0.12 tolerated(0.17) possibly_damaging(0.866) TCGA-P3-A6SW-01 2 71044037 71044037 G A CLEC4F Missense_Mutation p.A159V 0.23 tolerated(0.22) benign(0.317) TCGA-P3-A6SW-01 2 90260160 90260160 G T IGKV1D-8 Missense_Mutation p.G88V 0.16 deleterious(0.02) possibly_damaging(0.669) TCGA-P3-A6SW-01 2 98421912 98421912 A G TMEM131 Silent p.I737I 0.08 TCGA-P3-A6SW-01 3 112993426 112993426 C T BOC Missense_Mutation p.S480L 0.07 tolerated(0.07) probably_damaging(0.99) TCGA-P3-A6SW-01 3 113084971 113084971 C T WDR52 Missense_Mutation p.G877E 0.05 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SW-01 3 114070207 114070207 C T ZBTB20 Missense_Mutation p.V240M 0.06 tolerated(0.19) probably_damaging(0.971) TCGA-P3-A6SW-01 3 11600092 11600092 G A VGLL4 Nonsense_Mutation p.Q277* 0.14 TCGA-P3-A6SW-01 3 121208192 121208192 G C POLQ Missense_Mutation p.L1196V 0.04 tolerated_low_confidence(0.53) benign(0.031) TCGA-P3-A6SW-01 3 121712219 121712219 G A ILDR1 Silent p.H459H 0.28 TCGA-P3-A6SW-01 3 180334096 180334096 G C CCDC39 Missense_Mutation p.S881C 0.04 deleterious(0) possibly_damaging(0.621) TCGA-P3-A6SW-01 3 41266471 41266471 C T CTNNB1 Nonsense_Mutation p.R90* 0.07 TCGA-P3-A6SW-01 3 41274855 41274855 C T CTNNB1 Missense_Mutation p.H369Y 0.07 deleterious(0.04) benign(0.405) TCGA-P3-A6SW-01 3 48454538 48454538 G A PLXNB1 Nonsense_Mutation p.Q1526* 0.05 TCGA-P3-A6SW-01 3 48507918 48507918 G C TREX1 Missense_Mutation p.R10T 0.12 tolerated_low_confidence(0.11) unknown(0) TCGA-P3-A6SW-01 4 113189405 113189405 C T AP1AR Missense_Mutation p.S250L 0.06 deleterious(0) probably_damaging(0.993) TCGA-P3-A6SW-01 4 175898456 175898456 G A ADAM29 Missense_Mutation p.D594N 0.06 deleterious(0) probably_damaging(0.99) TCGA-P3-A6SW-01 4 41951378 41951378 C T TMEM33 Missense_Mutation p.S197L 0.10 deleterious(0.01) benign(0.284) TCGA-P3-A6SW-01 4 49009244 49009244 A G CWH43 Missense_Mutation p.N363D 0.10 tolerated(0.42) benign(0.003) TCGA-P3-A6SW-01 5 11117603 11117603 C T CTNND2 Missense_Mutation p.V746M 0.21 deleterious(0.01) benign(0.419) TCGA-P3-A6SW-01 5 129521409 129521409 C T CHSY3 Silent p.F858F 0.13 TCGA-P3-A6SW-01 5 139947502 139947502 T G SLC35A4 Missense_Mutation p.S250A 0.11 deleterious(0.04) probably_damaging(0.982) TCGA-P3-A6SW-01 5 140262058 140262058 A G PCDHA13 Missense_Mutation p.K69E 0.05 deleterious_low_confidence(0.01) benign(0.029) TCGA-P3-A6SW-01 5 14492732 14492732 G A TRIO Silent p.T2563T 0.10 TCGA-P3-A6SW-01 5 172517753 172517753 C G CREBRF Missense_Mutation p.L191V 0.16 tolerated_low_confidence(0.57) benign(0.001) TCGA-P3-A6SW-01 5 31983706 31983706 C T PDZD2 Missense_Mutation p.R308C 0.28 tolerated(0.26) benign(0.01) TCGA-P3-A6SW-01 5 41065521 41065521 C T MROH2B Silent p.V91V 0.26 TCGA-P3-A6SW-01 5 96121525 96121525 G A ERAP1 Missense_Mutation p.A637V 0.06 tolerated(0.11) possibly_damaging(0.616) TCGA-P3-A6SW-01 6 152675908 152675908 C T SYNE1 Silent p.E3604E 0.09 TCGA-P3-A6SW-01 6 36182028 36182028 G A BRPF3 Missense_Mutation p.E952K 0.10 tolerated(0.39) benign(0.194) TCGA-P3-A6SW-01 6 43305922 43305922 G C ZNF318 Silent p.L1938L 0.05 TCGA-P3-A6SW-01 6 49660582 49660582 A C CRISP2 Missense_Mutation p.S212R 0.10 deleterious(0.01) probably_damaging(0.981) TCGA-P3-A6SW-01 6 49814367 49814367 C G CRISP1 Missense_Mutation p.E101Q 0.15 deleterious(0) probably_damaging(0.996) TCGA-P3-A6SW-01 6 51524139 51524139 G C PKHD1 Missense_Mutation p.I3595M 0.05 deleterious(0) possibly_damaging(0.878) TCGA-P3-A6SW-01 7 106509636 106509636 C T PIK3CG Nonsense_Mutation p.R544* 0.18 TCGA-P3-A6SW-01 7 110763381 110763381 G A LRRN3 Missense_Mutation p.D185N 0.08 deleterious(0.03) benign(0.16) TCGA-P3-A6SW-01 7 116546361 116546361 C T CAPZA2 Silent p.C157C 0.12 TCGA-P3-A6SW-01 7 138957170 138957170 C T UBN2 Nonsense_Mutation p.Q567* 0.06 TCGA-P3-A6SW-01 7 150269411 150269411 G C GIMAP4 Missense_Mutation p.D85H 0.05 deleterious(0) probably_damaging(1) TCGA-P3-A6SW-01 7 99527091 99527091 G A GJC3 Silent p.F51F 0.07 TCGA-P3-A6SW-01 8 100523442 100523442 G A VPS13B Silent p.E1470E 0.17 TCGA-P3-A6SW-01 8 139380215 139380215 T C FAM135B Missense_Mutation p.I4M 0.09 deleterious(0) benign(0.068) TCGA-P3-A6SW-01 8 52387662 52387662 C A PXDNL Silent p.L188L 0.10 TCGA-P3-A6SW-01 8 70514051 70514051 G A SULF1 Missense_Mutation p.E350K 0.08 tolerated(0.09) benign(0.292) TCGA-P3-A6SW-01 8 98289558 98289558 G A TSPYL5 Missense_Mutation p.A172V 0.05 tolerated(0.31) benign(0.089) TCGA-P3-A6SW-01 9 14813014 14813014 G A FREM1 Missense_Mutation p.P897S 0.12 tolerated(0.2) benign(0.024) TCGA-P3-A6SW-01 9 32630547 32630547 C T TAF1L Silent p.T1677T 0.08 TCGA-P3-A6SW-01 9 8341854 8341854 C A PTPRD Missense_Mutation p.V1596F 0.06 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SW-01 X 138643737 138643737 G A F9 Missense_Mutation p.R298Q 0.20 tolerated(0.23) benign(0.016) TCGA-P3-A6SW-01 X 139586659 139586659 G A SOX3 Silent p.I189I 0.18 TCGA-P3-A6SW-01 X 37955445 37955445 T A SYTL5 Silent p.T340T 0.40 TCGA-P3-A6SW-01 X 41204723 41204724 - A DDX3X Frame_Shift_Ins p.N414Kfs*20 0.09 TCGA-P3-A6SX-01 10 123844120 123844120 A C TACC2 Missense_Mutation p.Q702P 0.18 probably_damaging(0.968) TCGA-P3-A6SX-01 10 28905264 28905264 A T WAC Silent p.G573G 0.22 TCGA-P3-A6SX-01 10 29776083 29776083 G A SVIL Intron 0.33 TCGA-P3-A6SX-01 10 45602405 45602405 G A RSU1P2 RNA 0.22 TCGA-P3-A6SX-01 10 50948845 50948845 C T OGDHL Missense_Mutation p.R684H 0.26 deleterious(0) benign(0.105) TCGA-P3-A6SX-01 10 51768660 51768660 G T AGAP6 Missense_Mutation p.G259W 0.30 deleterious(0.03) probably_damaging(0.981) TCGA-P3-A6SX-01 10 5808025 5808025 C G GDI2 Missense_Mutation p.E428Q 0.21 tolerated(0.16) benign(0.061) TCGA-P3-A6SX-01 10 68280454 68280454 A G CTNNA3 Silent p.R484R 0.32 TCGA-P3-A6SX-01 10 74882016 74882017 - A NUDT13 Frame_Shift_Ins p.A104Sfs*11 0.23 TCGA-P3-A6SX-01 10 86130849 86130849 A C CCSER2 Missense_Mutation p.K14T 0.24 deleterious(0) benign(0.441) TCGA-P3-A6SX-01 10 88834371 88834371 C T GLUD1 Missense_Mutation p.D195N 0.10 tolerated(0.29) possibly_damaging(0.54) TCGA-P3-A6SX-01 11 108060031 108060031 T C NPAT Missense_Mutation p.I120V 0.43 deleterious(0.02) benign(0.384) TCGA-P3-A6SX-01 11 114182871 114182871 C T NNMT Missense_Mutation p.P156L 0.38 tolerated(0.27) benign(0.02) TCGA-P3-A6SX-01 11 124749214 124749214 C T ROBO3 Missense_Mutation p.P1221L 0.27 tolerated_low_confidence(0.08) benign(0.002) TCGA-P3-A6SX-01 11 128709573 128709573 C T KCNJ1 Missense_Mutation p.C208Y 0.33 deleterious(0.03) probably_damaging(1) TCGA-P3-A6SX-01 11 17757969 17757969 C T KCNC1 Silent p.G140G 0.44 TCGA-P3-A6SX-01 11 3423085 3423085 C T TSSC2 RNA 0.20 TCGA-P3-A6SX-01 11 4411329 4411329 T A TRIM21 Missense_Mutation p.E104V 0.29 deleterious(0) probably_damaging(0.969) TCGA-P3-A6SX-01 11 44959881 44959881 C T TP53I11 Silent p.A2A 0.17 TCGA-P3-A6SX-01 11 49974454 49974454 C A OR4C13 Missense_Mutation p.F160L 0.32 tolerated_low_confidence(0.07) benign(0.327) TCGA-P3-A6SX-01 11 55111056 55111056 C T OR4A16 Missense_Mutation p.P127L 0.30 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-P3-A6SX-01 11 63964770 63964770 G A STIP1 Missense_Mutation p.D234N 0.11 tolerated(0.17) benign(0.016) TCGA-P3-A6SX-01 11 70336360 70336360 G T SHANK2 Intron 0.10 TCGA-P3-A6SX-01 11 71293728 71293728 A G KRTAP5-11 Silent p.C52C 0.15 TCGA-P3-A6SX-01 11 812565 812565 G T RPLP2 Missense_Mutation p.G68V 0.29 deleterious(0) unknown(0) TCGA-P3-A6SX-01 11 89935704 89935704 G A CHORDC1 Nonsense_Mutation p.R290* 0.14 TCGA-P3-A6SX-01 11 95504679 95504679 T C FAM76B 3'UTR 0.28 TCGA-P3-A6SX-01 12 105255129 105255129 C T SLC41A2 Missense_Mutation p.D399N 0.06 tolerated(0.11) possibly_damaging(0.548) TCGA-P3-A6SX-01 12 112182723 112182723 G C ACAD10 Missense_Mutation p.R695T 0.11 tolerated(0.06) benign(0.173) TCGA-P3-A6SX-01 12 121442181 121442181 C G C12orf43 Missense_Mutation p.K188N 0.14 deleterious(0.01) possibly_damaging(0.73) TCGA-P3-A6SX-01 12 18443895 18443895 A G PIK3C2G Missense_Mutation p.I290V 0.24 tolerated(1) benign(0.019) TCGA-P3-A6SX-01 12 29523088 29523088 T A ERGIC2 Silent p.T58T 0.21 TCGA-P3-A6SX-01 12 55863563 55863563 G A OR6C70 Silent p.R120R 0.14 TCGA-P3-A6SX-01 12 58135900 58135900 G T AGAP2 5'Flank 0.12 TCGA-P3-A6SX-01 12 72057471 72057471 T C ZFC3H1 5'UTR 0.28 TCGA-P3-A6SX-01 13 114152668 114152668 A C TMCO3 Missense_Mutation p.E152D 0.29 deleterious(0.01) possibly_damaging(0.901) TCGA-P3-A6SX-01 13 20240584 20240584 C G MPHOSPH8 Nonsense_Mutation p.S680* 0.16 TCGA-P3-A6SX-01 13 26114470 26114470 A G ATP8A2 Missense_Mutation p.M199V 0.15 deleterious(0.02) benign(0.373) TCGA-P3-A6SX-01 13 27669839 27669839 T C USP12 Missense_Mutation p.I158V 0.13 tolerated(1) benign(0.001) TCGA-P3-A6SX-01 13 36424740 36424740 C A DCLK1 Intron 0.45 TCGA-P3-A6SX-01 13 37539709 37539709 T C ALG5 Intron 0.24 TCGA-P3-A6SX-01 13 49865877 49865877 G A CDADC1 Missense_Mutation p.R510H 0.44 tolerated_low_confidence(0.19) benign(0.001) TCGA-P3-A6SX-01 13 84455015 84455015 C G SLITRK1 Missense_Mutation p.E210Q 0.43 deleterious(0) probably_damaging(0.994) TCGA-P3-A6SX-01 13 86368230 86368230 T C SLITRK6 Missense_Mutation p.Y805C 0.06 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SX-01 13 93879707 93879707 A G GPC6 5'UTR 0.36 TCGA-P3-A6SX-01 14 101350712 101350712 G T RTL1 Missense_Mutation p.H138Q 0.71 tolerated_low_confidence(0.35) benign(0.001) TCGA-P3-A6SX-01 14 21971933 21971933 G A METTL3 Silent p.S64S 0.55 TCGA-P3-A6SX-01 14 26939671 26939671 C A NOVA1 Intron 0.12 TCGA-P3-A6SX-01 14 55411049 55411049 C T WDHD1 Splice_Site p.X1063_splice 0.51 TCGA-P3-A6SX-01 14 58605500 58605500 C T C14orf37 Missense_Mutation p.A193T 0.07 tolerated(0.11) benign(0) TCGA-P3-A6SX-01 14 60587916 60587916 C G PCNXL4 Missense_Mutation p.L415V 0.50 tolerated(0.29) benign(0.043) TCGA-P3-A6SX-01 14 62213681 62213681 A G HIF1A Missense_Mutation p.M811V 0.11 tolerated(0.11) benign(0.08) TCGA-P3-A6SX-01 14 72152220 72152220 G A SIPA1L1 Silent p.P1082P 0.17 TCGA-P3-A6SX-01 14 77793842 77793842 C T GSTZ1 Missense_Mutation p.P55S 0.22 deleterious(0.03) possibly_damaging(0.765) TCGA-P3-A6SX-01 15 33926849 33926849 G C RYR3 Missense_Mutation p.K1030N 0.28 probably_damaging(0.914) TCGA-P3-A6SX-01 15 34640443 34640443 G T NUTM1 Missense_Mutation p.G97V 0.42 deleterious(0.04) benign(0.314) TCGA-P3-A6SX-01 15 48826281 48826281 A T FBN1 Nonsense_Mutation p.C286* 0.31 TCGA-P3-A6SX-01 15 54586205 54586205 C A UNC13C Missense_Mutation p.Q1311K 0.29 deleterious_low_confidence(0.05) probably_damaging(0.986) TCGA-P3-A6SX-01 15 62148536 62148536 A T VPS13C Missense_Mutation p.D3675E 0.26 tolerated(1) benign(0.005) TCGA-P3-A6SX-01 15 65489297 65489297 G A CILP Silent p.S1109S 0.21 TCGA-P3-A6SX-01 15 66618320 66618320 A T DIS3L Missense_Mutation p.I607F 0.32 deleterious(0.03) benign(0.208) TCGA-P3-A6SX-01 15 88679771 88679771 C A NTRK3 Missense_Mutation p.C231F 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-P3-A6SX-01 16 16259677 16259677 C G ABCC6 Missense_Mutation p.E1037Q 0.13 deleterious(0) probably_damaging(0.925) TCGA-P3-A6SX-01 16 20748523 20748523 G A THUMPD1 Silent p.V247V 0.33 TCGA-P3-A6SX-01 16 618295 618295 G T NHLRC4 Missense_Mutation p.C83F 0.38 deleterious(0) possibly_damaging(0.548) TCGA-P3-A6SX-01 16 67979053 67979053 C T SLC12A4 Missense_Mutation p.D1037N 0.42 tolerated(0.19) possibly_damaging(0.821) TCGA-P3-A6SX-01 16 77317725 77317725 G C ADAMTS18 3'UTR 0.26 TCGA-P3-A6SX-01 17 11592934 11592934 C A DNAH9 Silent p.I1265I 0.34 TCGA-P3-A6SX-01 17 2595752 2595752 C T CLUH Missense_Mutation p.G1116R 0.18 deleterious(0) probably_damaging(0.964) TCGA-P3-A6SX-01 17 3324328 3324328 C A OR3A3 Missense_Mutation p.A156E 0.39 deleterious(0.03) benign(0.381) TCGA-P3-A6SX-01 17 33321376 33321376 C T LIG3 Nonsense_Mutation p.R513* 0.19 TCGA-P3-A6SX-01 17 34863272 34863272 C T MYO19 Missense_Mutation p.G478E 0.19 deleterious(0) probably_damaging(1) TCGA-P3-A6SX-01 17 38433395 38433395 A G WIPF2 Missense_Mutation p.Y414C 0.18 deleterious(0) possibly_damaging(0.751) TCGA-P3-A6SX-01 17 39637100 39637100 C T KRT35 Missense_Mutation p.G84S 0.31 tolerated(1) benign(0.172) TCGA-P3-A6SX-01 17 39775780 39775780 G C KRT17 3'UTR 0.23 TCGA-P3-A6SX-01 17 4859307 4859307 C T ENO3 Silent p.N312N 0.13 TCGA-P3-A6SX-01 17 65105671 65105671 G A HELZ Silent p.H1350H 0.37 TCGA-P3-A6SX-01 17 7578441 7578441 G C TP53 Nonsense_Mutation p.Y163* 0.52 TCGA-P3-A6SX-01 17 78024020 78024020 T A CCDC40 Missense_Mutation p.L366Q 0.21 deleterious(0) probably_damaging(0.98) TCGA-P3-A6SX-01 17 80377699 80377699 G A HEXDC Silent p.Q8Q 0.11 TCGA-P3-A6SX-01 17 8158955 8158955 A G PFAS Missense_Mutation p.I174V 0.41 tolerated(1) benign(0.003) TCGA-P3-A6SX-01 17 9862624 9862624 T C GAS7 Intron 0.30 TCGA-P3-A6SX-01 18 13095538 13095538 C G CEP192 Silent p.V2097V 0.27 TCGA-P3-A6SX-01 18 14852093 14852093 C G ANKRD30B Missense_Mutation p.Q1265E 0.10 deleterious(0) possibly_damaging(0.764) TCGA-P3-A6SX-01 18 43310271 43310271 G C SLC14A1 Missense_Mutation p.E52Q 0.28 tolerated(0.22) benign(0.01) TCGA-P3-A6SX-01 18 65178269 65178269 G T DSEL Missense_Mutation p.L1203I 0.28 tolerated(0.39) benign(0.009) TCGA-P3-A6SX-01 18 65178364 65178364 G T DSEL Missense_Mutation p.T1171N 0.25 deleterious(0) possibly_damaging(0.901) TCGA-P3-A6SX-01 18 74091089 74091089 G C ZNF516 Missense_Mutation p.A994G 0.30 tolerated(0.45) possibly_damaging(0.739) TCGA-P3-A6SX-01 19 13883052 13883052 C T MRI1 Missense_Mutation p.T356I 0.34 tolerated(0.23) benign(0.002) TCGA-P3-A6SX-01 19 3179690 3179690 G A S1PR4 Silent p.S300S 0.21 TCGA-P3-A6SX-01 19 34843626 34843626 C T KIAA0355 Silent p.S993S 0.40 TCGA-P3-A6SX-01 19 46375995 46375995 G A FOXA3 Silent p.A244A 0.79 TCGA-P3-A6SX-01 19 55147133 55147133 C T LILRB1 Intron 0.60 TCGA-P3-A6SX-01 19 58805933 58805933 G C ZNF8 Missense_Mutation p.Q253H 0.58 deleterious(0.02) possibly_damaging(0.701) TCGA-P3-A6SX-01 19 9009654 9009654 A T MUC16 Nonsense_Mutation p.Y13024* 0.25 TCGA-P3-A6SX-01 19 9085048 9085048 G T MUC16 Missense_Mutation p.P2256H 0.15 unknown(0) TCGA-P3-A6SX-01 1 101194828 101194828 A C VCAM1 Missense_Mutation p.N365T 0.33 tolerated(0.3) benign(0.002) TCGA-P3-A6SX-01 1 103377765 103377765 G T COL11A1 Missense_Mutation p.P1346T 0.39 unknown(0) TCGA-P3-A6SX-01 1 109944612 109944612 G T PSMA5 3'UTR 0.24 TCGA-P3-A6SX-01 1 117503966 117503966 G T PTGFRN Missense_Mutation p.A439S 0.21 tolerated(0.32) benign(0.243) TCGA-P3-A6SX-01 1 120510760 120510760 T G NOTCH2 Missense_Mutation p.T402P 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-P3-A6SX-01 1 151380618 151380618 T C POGZ Missense_Mutation p.Y778C 0.52 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SX-01 1 152283569 152283569 G T FLG Missense_Mutation p.H1265N 0.28 benign(0.322) TCGA-P3-A6SX-01 1 152884125 152884125 C A IVL 3'UTR 0.33 TCGA-P3-A6SX-01 1 158326619 158326619 C T CD1E Missense_Mutation p.A367V 0.16 tolerated(0.1) benign(0.214) TCGA-P3-A6SX-01 1 179985006 179985006 C G CEP350 Missense_Mutation p.S692C 0.29 probably_damaging(0.999) TCGA-P3-A6SX-01 1 19581327 19581327 T G MRTO4 Missense_Mutation p.I27R 0.31 deleterious(0.03) possibly_damaging(0.819) TCGA-P3-A6SX-01 1 221912532 221912532 C A DUSP10 Missense_Mutation p.K185N 0.58 tolerated(0.47) possibly_damaging(0.515) TCGA-P3-A6SX-01 1 237880645 237880645 C G RYR2 Missense_Mutation p.L3491V 0.50 benign(0.222) TCGA-P3-A6SX-01 1 240656667 240656667 C T GREM2 Missense_Mutation p.G37S 0.44 tolerated(1) benign(0.001) TCGA-P3-A6SX-01 1 27688596 27688596 G C MAP3K6 Silent p.L467L 0.11 TCGA-P3-A6SX-01 1 34083115 34083115 G A CSMD2 Missense_Mutation p.P1937L 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-P3-A6SX-01 1 34666508 34666508 C A C1orf94 Missense_Mutation p.P382Q 0.33 deleterious_low_confidence(0.03) benign(0.146) TCGA-P3-A6SX-01 1 37948897 37948897 C T ZC3H12A Silent p.H495H 0.38 TCGA-P3-A6SX-01 1 46657696 46657696 G C POMGNT1 Intron 0.40 TCGA-P3-A6SX-01 1 70832204 70832204 C T HHLA3 Nonsense_Mutation p.R80* 0.23 TCGA-P3-A6SX-01 20 24523956 24523956 G T SYNDIG1 Missense_Mutation p.D75Y 0.39 deleterious(0) possibly_damaging(0.855) TCGA-P3-A6SX-01 20 2776512 2776512 A T CPXM1 Missense_Mutation p.W485R 0.33 deleterious(0) probably_damaging(0.998) TCGA-P3-A6SX-01 20 60511974 60511974 C A CDH4 Missense_Mutation p.D908E 0.32 tolerated(0.05) possibly_damaging(0.473) TCGA-P3-A6SX-01 20 62616363 62616363 G C PRPF6 Missense_Mutation p.R115T 0.11 deleterious(0) probably_damaging(0.948) TCGA-P3-A6SX-01 20 62701612 62701612 C T TCEA2 Splice_Site p.X173_splice 0.12 TCGA-P3-A6SX-01 21 10906900 10906900 T A TPTE 3'UTR 0.15 TCGA-P3-A6SX-01 21 46875728 46875728 C T COL18A1 Missense_Mutation p.T95I 0.36 unknown(0) TCGA-P3-A6SX-01 22 23487587 23487587 G T RAB36 Missense_Mutation p.R12L 0.23 tolerated_low_confidence(0.27) benign(0.25) TCGA-P3-A6SX-01 22 24463031 24463031 C G CABIN1 Missense_Mutation p.L711V 0.10 deleterious(0.04) probably_damaging(0.99) TCGA-P3-A6SX-01 22 35661485 35661485 C G HMGXB4 Nonsense_Mutation p.Y368* 0.15 TCGA-P3-A6SX-01 22 41277951 41277951 A T XPNPEP3 Missense_Mutation p.N120I 0.16 deleterious(0) possibly_damaging(0.812) TCGA-P3-A6SX-01 22 43529248 43529248 T A MCAT Missense_Mutation p.K325M 0.48 deleterious(0.01) possibly_damaging(0.532) TCGA-P3-A6SX-01 22 50962127 50962127 C T SCO2 Silent p.T238T 0.51 TCGA-P3-A6SX-01 2 120221754 120221754 A C SCTR Missense_Mutation p.I194S 0.30 deleterious(0) possibly_damaging(0.903) TCGA-P3-A6SX-01 2 122144728 122144728 G A CLASP1 Missense_Mutation p.T1115I 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-P3-A6SX-01 2 144276846 144276846 G A ARHGAP15 Missense_Mutation p.G280S 0.29 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SX-01 2 162851518 162851518 G C DPP4 Missense_Mutation p.Q718E 0.17 tolerated(0.19) possibly_damaging(0.591) TCGA-P3-A6SX-01 2 168105241 168105241 G A XIRP2 Missense_Mutation p.A2447T 0.16 benign(0.001) TCGA-P3-A6SX-01 2 179702112 179702112 A T CCDC141 Missense_Mutation p.D1278E 0.22 tolerated(0.41) benign(0.006) TCGA-P3-A6SX-01 2 189406184 189406184 G T GULP1 Intron 0.29 TCGA-P3-A6SX-01 2 210543340 210543340 G T MAP2 Missense_Mutation p.V103L 0.27 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-P3-A6SX-01 2 212587161 212587161 A T ERBB4 Missense_Mutation p.N280K 0.33 tolerated(0.41) benign(0.006) TCGA-P3-A6SX-01 2 242573432 242573432 C T THAP4 Nonsense_Mutation p.W47* 0.21 TCGA-P3-A6SX-01 2 26534825 26534825 C G GPR113 Missense_Mutation p.A591P 0.28 deleterious(0.03) probably_damaging(0.912) TCGA-P3-A6SX-01 2 43452233 43452234 - CA ZFP36L2 Frame_Shift_Ins p.G237Vfs*225 0.29 TCGA-P3-A6SX-01 2 61259091 61259091 C T PEX13 Silent p.L210L 0.28 TCGA-P3-A6SX-01 2 61726874 61726874 T A XPO1 Missense_Mutation p.Q188H 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-P3-A6SX-01 2 73900042 73900042 G C ALMS1P RNA 0.30 TCGA-P3-A6SX-01 2 74441341 74441341 C G MTHFD2 Missense_Mutation p.S342C 0.31 deleterious_low_confidence(0.03) benign(0.004) TCGA-P3-A6SX-01 2 80620362 80620362 T C CTNNA2 Silent p.P361P 0.14 TCGA-P3-A6SX-01 2 80620407 80620407 A C CTNNA2 Silent p.L376L 0.15 TCGA-P3-A6SX-01 2 90260223 90260223 A G IGKV1D-8 Missense_Mutation p.Y109C 0.34 deleterious(0) possibly_damaging(0.702) TCGA-P3-A6SX-01 2 99155443 99155443 G A INPP4A Silent p.S223S 0.19 TCGA-P3-A6SX-01 2 99976938 99976938 A G EIF5B Missense_Mutation p.I58V 0.10 unknown(0) TCGA-P3-A6SX-01 3 113327358 113327358 C T SIDT1 Silent p.C565C 0.20 TCGA-P3-A6SX-01 3 113679631 113679631 A T ZDHHC23 3'UTR 0.47 TCGA-P3-A6SX-01 3 113955304 113955304 T A ZNF80 Silent p.R206R 0.05 TCGA-P3-A6SX-01 3 116163928 116163928 G A LSAMP 5'UTR 0.33 TCGA-P3-A6SX-01 3 124398338 124398338 G C KALRN Missense_Mutation p.D722H 0.10 deleterious(0.01) probably_damaging(0.911) TCGA-P3-A6SX-01 3 125223552 125223552 T C SNX4 Missense_Mutation p.I60V 0.27 tolerated(0.06) possibly_damaging(0.669) TCGA-P3-A6SX-01 3 131081077 131081077 G T NUDT16P1 RNA 0.50 TCGA-P3-A6SX-01 3 164697065 164697065 C A SI 3'UTR 0.26 TCGA-P3-A6SX-01 3 196865257 196865257 T C DLG1 Missense_Mutation p.N273S 0.52 deleterious(0.03) probably_damaging(0.995) TCGA-P3-A6SX-01 3 25611300 25611300 G A RARB Missense_Mutation p.C167Y 0.08 tolerated(0.92) benign(0.063) TCGA-P3-A6SX-01 3 3886758 3886758 C A LRRN1 Missense_Mutation p.L145I 0.33 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SX-01 3 97806442 97806442 C G OR5AC2 Silent p.L142L 0.20 TCGA-P3-A6SX-01 4 122756431 122756431 G C BBS7 Nonsense_Mutation p.S460* 0.23 TCGA-P3-A6SX-01 4 126412023 126412023 G T FAT4 Missense_Mutation p.L4682F 0.44 possibly_damaging(0.584) TCGA-P3-A6SX-01 4 134073258 134073258 G T PCDH10 Nonsense_Mutation p.E655* 0.35 TCGA-P3-A6SX-01 4 146044652 146044652 A G ABCE1 Missense_Mutation p.T514A 0.27 tolerated(0.19) benign(0.259) TCGA-P3-A6SX-01 4 155718975 155718975 C T RBM46 Missense_Mutation p.P55L 0.35 tolerated(0.07) probably_damaging(0.974) TCGA-P3-A6SX-01 4 178283546 178283546 C A NEIL3 Missense_Mutation p.P580H 0.17 deleterious(0) probably_damaging(0.992) TCGA-P3-A6SX-01 4 183574980 183574980 G C TENM3 Missense_Mutation p.E349Q 0.15 tolerated(0.26) benign(0.403) TCGA-P3-A6SX-01 4 3225279 3225279 C T HTT Silent p.L2539L 0.13 TCGA-P3-A6SX-01 4 55599289 55599289 C A KIT Silent p.I805I 0.31 TCGA-P3-A6SX-01 4 89199431 89199431 C G PPM1K Missense_Mutation p.G102A 0.42 deleterious(0) probably_damaging(0.951) TCGA-P3-A6SX-01 5 108713935 108713935 T C PJA2 Missense_Mutation p.Y418C 0.52 tolerated(0.08) probably_damaging(0.94) TCGA-P3-A6SX-01 5 176008504 176008504 G A CDHR2 Missense_Mutation p.R660H 0.11 tolerated(0.07) benign(0.117) TCGA-P3-A6SX-01 5 23523408 23523408 G T PRDM9 Missense_Mutation p.K297N 0.16 deleterious(0) benign(0.007) TCGA-P3-A6SX-01 5 26881714 26881714 G C CDH9 Missense_Mutation p.A634G 0.16 deleterious(0.03) benign(0) TCGA-P3-A6SX-01 5 2755276 2755277 - A C5orf38 3'UTR 0.36 TCGA-P3-A6SX-01 5 35010176 35010176 C A AGXT2 Missense_Mutation p.D423Y 0.52 deleterious(0) possibly_damaging(0.875) TCGA-P3-A6SX-01 5 35010177 35010177 C G AGXT2 Silent p.R422R 0.52 TCGA-P3-A6SX-01 5 74647084 74647084 A G HMGCR Missense_Mutation p.N378S 0.59 tolerated(0.79) benign(0) TCGA-P3-A6SX-01 5 7520913 7520913 C A ADCY2 Missense_Mutation p.D157E 0.37 tolerated(0.3) benign(0.004) TCGA-P3-A6SX-01 6 102247607 102247607 C T GRIK2 Nonsense_Mutation p.Q346* 0.30 TCGA-P3-A6SX-01 6 108197819 108197819 C T SEC63 Silent p.Q661Q 0.16 TCGA-P3-A6SX-01 6 119327323 119327323 T C FAM184A Intron 0.31 TCGA-P3-A6SX-01 6 128134538 128134538 G A THEMIS Silent p.I416I 0.32 TCGA-P3-A6SX-01 6 152655242 152655242 C T SYNE1 Missense_Mutation p.R4232K 0.30 probably_damaging(0.99) TCGA-P3-A6SX-01 6 25727498 25727498 C A HIST1H2BA Missense_Mutation p.T121N 0.39 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-P3-A6SX-01 6 2685586 2685586 G T MYLK4 Silent p.L163L 0.12 TCGA-P3-A6SX-01 6 34392518 34392518 G A RPS10 Missense_Mutation p.H84Y 0.20 deleterious(0.02) benign(0.35) TCGA-P3-A6SX-01 6 39304172 39304172 T G KIF6 3'UTR 0.50 TCGA-P3-A6SX-01 6 39304173 39304173 C A KIF6 3'UTR 0.47 TCGA-P3-A6SX-01 6 43612827 43612827 G A RSPH9 5'UTR 0.29 TCGA-P3-A6SX-01 6 69640540 69640540 G T BAI3 Missense_Mutation p.A283S 0.28 tolerated(0.34) benign(0.045) TCGA-P3-A6SX-01 6 72975745 72975745 C T RIMS1 Nonsense_Mutation p.R1131* 0.40 TCGA-P3-A6SX-01 6 83748144 83748144 C A UBE3D Missense_Mutation p.V220L 0.31 deleterious(0.04) benign(0.023) TCGA-P3-A6SX-01 7 14661095 14661095 C T DGKB Missense_Mutation p.E399K 0.57 tolerated(0.6) benign(0.007) TCGA-P3-A6SX-01 7 150217161 150217161 C A GIMAP7 Silent p.I33I 0.18 TCGA-P3-A6SX-01 7 16317850 16317850 C G ISPD Missense_Mutation p.E279D 0.32 tolerated(0.31) benign(0.074) TCGA-P3-A6SX-01 7 2987215 2987215 G A CARD11 Nonsense_Mutation p.R72* 0.06 TCGA-P3-A6SX-01 7 31692300 31692300 G C CCDC129 Intron 0.29 TCGA-P3-A6SX-01 7 31692301 31692301 G T CCDC129 Intron 0.30 TCGA-P3-A6SX-01 7 87792431 87792431 T C ADAM22 Missense_Mutation p.V671A 0.36 tolerated(0.35) benign(0.001) TCGA-P3-A6SX-01 7 91875787 91875787 G T ANKIB1 5'UTR 0.08 TCGA-P3-A6SX-01 7 94539840 94539840 T A PPP1R9A Missense_Mutation p.F139I 0.18 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SX-01 7 99303079 99303079 G A CYP3A7 3'UTR 0.19 TCGA-P3-A6SX-01 7 99711563 99711563 G C TAF6 Missense_Mutation p.F94L 0.08 tolerated(0.1) possibly_damaging(0.856) TCGA-P3-A6SX-01 8 144671495 144671495 C A EEF1D Missense_Mutation p.G253C 0.42 deleterious(0) probably_damaging(0.983) TCGA-P3-A6SX-01 8 17579364 17579364 G C MTUS1 Intron 0.18 TCGA-P3-A6SX-01 8 43173698 43173698 C G POTEA RNA 0.37 TCGA-P3-A6SX-01 8 87567133 87567133 A G CPNE3 Missense_Mutation p.Y392C 0.29 deleterious(0.01) benign(0.208) TCGA-P3-A6SX-01 8 87683198 87683198 G T CNGB3 Missense_Mutation p.S156Y 0.29 deleterious(0) possibly_damaging(0.827) TCGA-P3-A6SX-01 8 98657027 98657027 C T MTDH Missense_Mutation p.A98V 0.52 tolerated(0.29) benign(0.035) TCGA-P3-A6SX-01 9 104432438 104432438 G A GRIN3A Silent p.F752F 0.34 TCGA-P3-A6SX-01 9 136216806 136216806 A G RPL7A Missense_Mutation p.E105G 0.59 deleterious(0.01) possibly_damaging(0.823) TCGA-P3-A6SX-01 9 139904328 139904328 C T ABCA2 Missense_Mutation p.E2175K 0.21 tolerated(0.06) benign(0.431) TCGA-P3-A6SX-01 9 21206966 21206966 A G IFNA10 Missense_Mutation p.M44T 0.44 deleterious(0) probably_damaging(0.999) TCGA-P3-A6SX-01 X 107909778 107909778 C T COL4A5 Silent p.P1169P 0.60 TCGA-P3-A6SX-01 X 107925107 107925107 A T COL4A5 Missense_Mutation p.Q1402L 0.63 possibly_damaging(0.542) TCGA-P3-A6SX-01 X 153539342 153539342 G A TKTL1 Missense_Mutation p.C169Y 0.77 tolerated(0.35) benign(0.013) TCGA-P3-A6SX-01 X 30268814 30268814 C A MAGEB1 Silent p.T68T 0.25 TCGA-P3-A6SX-01 X 32632460 32632460 G A DMD Missense_Mutation p.P481L 0.55 probably_damaging(0.967) TCGA-P3-A6SX-01 X 44945195 44945195 C A KDM6A Nonsense_Mutation p.Y1173* 0.53 TCGA-P3-A6SX-01 X 86888860 86888860 C T KLHL4 Missense_Mutation p.A554V 0.58 deleterious(0) probably_damaging(0.982) TCGA-P3-A6SX-01 X 91642806 91642806 C A PCDH11X Missense_Mutation p.H1073N 0.63 tolerated(0.26) benign(0.04) TCGA-P3-A6T0-01 10 105770646 105770646 G A SLK Missense_Mutation p.A953T 0.54 tolerated(0.34) benign(0.021) TCGA-P3-A6T0-01 10 134906561 134906561 T C GPR123 Intron 0.30 TCGA-P3-A6T0-01 10 135025348 135025348 G A KNDC1 Missense_Mutation p.G1408S 0.57 tolerated(0.14) benign(0.079) TCGA-P3-A6T0-01 10 24722043 24722043 A T KIAA1217 Nonsense_Mutation p.K225* 0.33 TCGA-P3-A6T0-01 10 27702454 27702454 C T PTCHD3 Silent p.A242A 0.34 TCGA-P3-A6T0-01 10 63829516 63829516 A G ARID5B Missense_Mutation p.S387G 0.39 deleterious(0) probably_damaging(0.959) TCGA-P3-A6T0-01 11 11964459 11964459 G A USP47 Missense_Mutation p.G896E 0.41 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-P3-A6T0-01 11 1950354 1950354 C T TNNT3 Silent p.T29T 0.27 TCGA-P3-A6T0-01 11 55653117 55653117 G T TRIM51 Missense_Mutation p.K71N 0.54 deleterious(0) benign(0.049) TCGA-P3-A6T0-01 11 89420577 89420577 T C FOLH1B RNA 0.28 TCGA-P3-A6T0-01 12 122983380 122983380 C T ZCCHC8 Missense_Mutation p.R79Q 0.14 tolerated(0.16) benign(0.045) TCGA-P3-A6T0-01 12 22606916 22606916 C T C2CD5 Missense_Mutation p.A929T 0.31 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T0-01 12 27235085 27235085 C T C12orf71 Missense_Mutation p.G111E 0.32 deleterious(0.03) probably_damaging(0.967) TCGA-P3-A6T0-01 12 56221370 56221370 C T DNAJC14 Nonsense_Mutation p.W358* 0.30 TCGA-P3-A6T0-01 13 20304417 20304417 G A PSPC1 Nonsense_Mutation p.R374* 0.34 TCGA-P3-A6T0-01 13 99098961 99098961 G A FARP1 Silent p.S982S 0.27 TCGA-P3-A6T0-01 14 24780174 24780174 G A LTB4R2 Missense_Mutation p.A102T 0.16 tolerated(0.13) benign(0.016) TCGA-P3-A6T0-01 14 30046393 30046393 G A PRKD1 3'UTR 0.23 TCGA-P3-A6T0-01 14 89337895 89337895 G A TTC8 Missense_Mutation p.R351Q 0.18 deleterious(0) probably_damaging(0.975) TCGA-P3-A6T0-01 14 92908448 92908448 G A SLC24A4 Missense_Mutation p.E137K 0.23 deleterious(0.01) possibly_damaging(0.786) TCGA-P3-A6T0-01 15 41272545 41272545 G A INO80 Missense_Mutation p.S1516F 0.38 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-P3-A6T0-01 15 73616161 73616161 C T HCN4 Missense_Mutation p.R758H 0.36 tolerated(0.56) unknown(0) TCGA-P3-A6T0-01 15 79058185 79058186 - TGGGTCC ADAMTS7 Frame_Shift_Ins p.K1357Dfs*7 0.10 TCGA-P3-A6T0-01 15 99472828 99472828 G A IGF1R Missense_Mutation p.V942I 0.08 tolerated(1) benign(0.001) TCGA-P3-A6T0-01 16 50744968 50744968 C T NOD2 Silent p.D382D 0.32 TCGA-P3-A6T0-01 16 50746258 50746258 T A NOD2 Silent p.P812P 0.37 TCGA-P3-A6T0-01 16 84879426 84879426 C T CRISPLD2 Missense_Mutation p.A92V 0.37 tolerated(0.08) possibly_damaging(0.612) TCGA-P3-A6T0-01 17 49713312 49713312 A G CA10 Silent p.S231S 0.31 TCGA-P3-A6T0-01 17 7577529 7577529 A T TP53 Missense_Mutation p.I251N 0.28 deleterious(0.03) possibly_damaging(0.851) TCGA-P3-A6T0-01 17 7579312 7579312 C T TP53 Silent p.T125T 0.28 TCGA-P3-A6T0-01 18 46284504 46284504 G A CTIF Missense_Mutation p.A267T 0.39 tolerated_low_confidence(0.91) benign(0.001) TCGA-P3-A6T0-01 18 74153250 74153250 G A ZNF516 Silent p.D587D 0.41 TCGA-P3-A6T0-01 19 10602863 10602863 C T KEAP1 Missense_Mutation p.V239M 0.58 deleterious(0) probably_damaging(0.977) TCGA-P3-A6T0-01 19 11489042 11489042 C T EPOR Missense_Mutation p.S382N 0.71 tolerated(0.27) benign(0.004) TCGA-P3-A6T0-01 19 12361173 12361173 G A ZNF44 Missense_Mutation p.T15I 0.26 benign(0.009) TCGA-P3-A6T0-01 19 36831234 36831234 G A ZFP14 Silent p.H498H 0.31 TCGA-P3-A6T0-01 19 39058417 39058417 G A RYR1 Missense_Mutation p.E4507K 0.39 unknown(0) TCGA-P3-A6T0-01 19 42791524 42791524 C T CIC Missense_Mutation p.R169C 0.30 probably_damaging(0.982) TCGA-P3-A6T0-01 19 44417673 44417673 G T ZNF45 Missense_Mutation p.P639T 0.35 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T0-01 19 45573294 45573294 G A CLASRP Missense_Mutation p.R630Q 0.32 deleterious_low_confidence(0) unknown(0) TCGA-P3-A6T0-01 19 52793356 52793356 G A ZNF766 Silent p.K104K 0.08 TCGA-P3-A6T0-01 19 57967712 57967712 G T VN1R1 Nonsense_Mutation p.S48* 0.28 TCGA-P3-A6T0-01 1 120462965 120462965 C T NOTCH2 Nonsense_Mutation p.W1789* 0.24 TCGA-P3-A6T0-01 1 156873743 156873745 CTT - PEAR1 In_Frame_Del p.L11del 0.36 TCGA-P3-A6T0-01 1 165533034 165533034 G A LRRC52 Silent p.S305S 0.33 TCGA-P3-A6T0-01 1 173951938 173951938 G A RC3H1 Missense_Mutation p.P232L 0.41 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T0-01 1 202464471 202464471 G C PPP1R12B Silent p.T732T 0.34 TCGA-P3-A6T0-01 1 243349562 243349562 A G CEP170 Missense_Mutation p.V424A 0.23 tolerated(0.61) benign(0.001) TCGA-P3-A6T0-01 1 243801019 243801019 T C AKT3 Missense_Mutation p.K152R 0.18 deleterious(0.03) possibly_damaging(0.532) TCGA-P3-A6T0-01 1 27609881 27609881 C T WDTC1 Missense_Mutation p.H78Y 0.25 tolerated(0.36) benign(0.245) TCGA-P3-A6T0-01 1 43308789 43308789 C T ERMAP Silent p.L438L 0.32 TCGA-P3-A6T0-01 20 24646213 24646213 G A SYNDIG1 3'UTR 0.27 TCGA-P3-A6T0-01 20 47266579 47266579 G A PREX1 Missense_Mutation p.R995C 0.62 deleterious(0.03) probably_damaging(0.993) TCGA-P3-A6T0-01 21 31538710 31538710 C A CLDN17 Missense_Mutation p.A76S 0.29 tolerated(0.2) benign(0.005) TCGA-P3-A6T0-01 22 21947165 21947165 C T UBE2L3 Missense_Mutation p.R73C 0.63 tolerated(0.06) benign(0.131) TCGA-P3-A6T0-01 22 30051610 30051610 G T NF2 Nonsense_Mutation p.E182* 0.44 TCGA-P3-A6T0-01 22 46614182 46614182 G A PPARA Missense_Mutation p.R131Q 0.25 tolerated(0.3) possibly_damaging(0.707) TCGA-P3-A6T0-01 22 50686413 50686413 C T HDAC10 Missense_Mutation p.A415T 0.58 tolerated(0.13) possibly_damaging(0.611) TCGA-P3-A6T0-01 2 18765459 18765459 G A NT5C1B Silent p.D322D 0.31 TCGA-P3-A6T0-01 2 198950189 198950189 G T PLCL1 Missense_Mutation p.D650Y 0.33 deleterious(0) probably_damaging(1) TCGA-P3-A6T0-01 2 211454904 211454904 G A CPS1 Silent p.A268A 0.31 TCGA-P3-A6T0-01 2 238244924 238244924 G A COL6A3 Missense_Mutation p.T2940M 0.32 unknown(0) TCGA-P3-A6T0-01 2 73676804 73676804 C G ALMS1 Nonsense_Mutation p.Y1049* 0.29 TCGA-P3-A6T0-01 2 74043580 74043580 C T C2orf78 Missense_Mutation p.R744C 0.29 deleterious(0.03) possibly_damaging(0.784) TCGA-P3-A6T0-01 2 8934009 8934009 C A KIDINS220 Missense_Mutation p.A403S 0.34 tolerated(0.11) benign(0.011) TCGA-P3-A6T0-01 3 151100525 151100525 C T MED12L Silent p.L1523L 0.18 TCGA-P3-A6T0-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.32 tolerated(0.11) possibly_damaging(0.529) TCGA-P3-A6T0-01 3 179305757 179305759 GAA - ACTL6A In_Frame_Del p.E418del 0.11 TCGA-P3-A6T0-01 3 183585677 183585677 T C PARL Missense_Mutation p.I99M 0.31 deleterious(0.05) benign(0.03) TCGA-P3-A6T0-01 3 187416478 187416478 G T RTP2 Silent p.I162I 0.24 TCGA-P3-A6T0-01 3 42982774 42982774 C G KRBOX1 Missense_Mutation p.I31M 0.30 tolerated(0.22) benign(0.272) TCGA-P3-A6T0-01 3 49070105 49070105 G A QRICH1 Missense_Mutation p.T666M 0.31 deleterious(0.01) probably_damaging(0.974) TCGA-P3-A6T0-01 4 106158210 106158210 C A TET2 Silent p.A1037A 0.31 TCGA-P3-A6T0-01 4 106158254 106158254 A G TET2 Missense_Mutation p.K1052R 0.35 tolerated(0.13) benign(0.111) TCGA-P3-A6T0-01 4 115891608 115891608 A C NDST4 Missense_Mutation p.I400S 0.22 tolerated(0.71) benign(0.042) TCGA-P3-A6T0-01 4 187542660 187542660 G A FAT1 Nonsense_Mutation p.Q1694* 0.67 TCGA-P3-A6T0-01 4 30724930 30724930 T C PCDH7 Missense_Mutation p.V629A 0.29 deleterious(0) probably_damaging(0.978) TCGA-P3-A6T0-01 4 41984154 41984154 C T DCAF4L1 Silent p.Y115Y 0.38 TCGA-P3-A6T0-01 4 73434495 73434495 C T ADAMTS3 5'UTR 0.31 TCGA-P3-A6T0-01 4 7728557 7728557 C T SORCS2 Silent p.G932G 0.39 TCGA-P3-A6T0-01 5 140589098 140589098 G A PCDHB12 Missense_Mutation p.E207K 0.35 deleterious_low_confidence(0.02) probably_damaging(0.954) TCGA-P3-A6T0-01 5 141335643 141335656 TGGGCACCAGCAGG - PCDH12 Frame_Shift_Del p.L588Rfs*12 0.39 TCGA-P3-A6T0-01 5 153056713 153056713 C A GRIA1 Missense_Mutation p.L351M 0.24 tolerated(0.17) probably_damaging(1) TCGA-P3-A6T0-01 5 170338003 170338003 C G RANBP17 Missense_Mutation p.Q209E 0.29 tolerated(1) benign(0.001) TCGA-P3-A6T0-01 5 179193104 179193104 C T MAML1 Missense_Mutation p.P365S 0.06 tolerated(0.07) benign(0.014) TCGA-P3-A6T0-01 5 26881405 26881405 G A CDH9 Missense_Mutation p.T737M 0.33 deleterious(0) possibly_damaging(0.873) TCGA-P3-A6T0-01 5 32387756 32387756 G C ZFR Missense_Mutation p.L800V 0.32 deleterious(0) unknown(0) TCGA-P3-A6T0-01 5 52360897 52360897 A G ITGA2 Silent p.V586V 0.03 TCGA-P3-A6T0-01 5 54416367 54416367 C G CDC20B Missense_Mutation p.W409C 0.23 deleterious(0) probably_damaging(1) TCGA-P3-A6T0-01 6 39864627 39864627 G A DAAM2 Missense_Mutation p.R794H 0.21 deleterious(0.01) benign(0.004) TCGA-P3-A6T0-01 6 40400626 40400626 G A LRFN2 Missense_Mutation p.T76M 0.12 deleterious(0) probably_damaging(0.982) TCGA-P3-A6T0-01 6 66094308 66094308 A T EYS Missense_Mutation p.W424R 0.12 tolerated(0.34) benign(0.278) TCGA-P3-A6T0-01 6 78172427 78172427 A C HTR1B Missense_Mutation p.Y232D 0.18 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T0-01 7 106545896 106545896 G A PIK3CG 3'UTR 0.31 TCGA-P3-A6T0-01 7 143807039 143807039 T C OR2A2 Missense_Mutation p.Y122H 0.31 deleterious(0.01) possibly_damaging(0.565) TCGA-P3-A6T0-01 7 154863177 154863177 G A HTR5A Missense_Mutation p.E190K 0.37 tolerated(0.72) benign(0.009) TCGA-P3-A6T0-01 7 16736663 16736663 G A BZW2 Missense_Mutation p.E316K 0.29 deleterious(0.01) probably_damaging(0.956) TCGA-P3-A6T0-01 7 24720064 24720064 G A MPP6 Silent p.A457A 0.35 TCGA-P3-A6T0-01 7 27134302 27134302 C T HOXA1 Silent p.T255T 0.38 TCGA-P3-A6T0-01 8 110457610 110457610 C T PKHD1L1 Missense_Mutation p.P1838S 0.37 deleterious(0) probably_damaging(0.994) TCGA-P3-A6T0-01 8 110474046 110474046 A G PKHD1L1 Missense_Mutation p.E2431G 0.42 deleterious(0) possibly_damaging(0.723) TCGA-P3-A6T0-01 8 22212931 22212931 G A PIWIL2 Silent p.K945K 0.33 TCGA-P3-A6T0-01 8 24188811 24188811 G A ADAM28 Missense_Mutation p.G418R 0.18 deleterious(0) benign(0.358) TCGA-P3-A6T0-01 9 136507569 136507569 C T DBH Missense_Mutation p.R243W 0.20 deleterious(0) possibly_damaging(0.893) TCGA-P3-A6T0-01 9 139282281 139282281 C T SNAPC4 Silent p.G381G 0.33 TCGA-P3-A6T0-01 9 15465490 15465490 G A PSIP1 3'UTR 0.25 TCGA-P3-A6T0-01 X 100630195 100630195 C T BTK Silent p.K26K 0.32 TCGA-P3-A6T0-01 X 10109536 10109536 G A WWC3 Missense_Mutation p.V1092I 0.48 deleterious(0.02) probably_damaging(0.98) TCGA-P3-A6T0-01 X 102337168 102337168 G C NXF3 Intron 0.33 TCGA-P3-A6T0-01 X 123514960 123514960 A G TENM1 Missense_Mutation p.V2542A 0.32 tolerated(0.12) benign(0.053) TCGA-P3-A6T0-01 X 153696262 153696262 T A PLXNA3 Silent p.T1246T 0.46 TCGA-P3-A6T0-01 X 70145793 70145793 C T SLC7A3 Missense_Mutation p.G577D 0.23 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T2-01 10 129209189 129209189 G A DOCK1 Splice_Site p.X1455_splice 0.10 TCGA-P3-A6T2-01 10 46969272 46969272 C G SYT15 Silent p.P63P 0.16 TCGA-P3-A6T2-01 10 7763677 7763677 G A ITIH2 Silent p.A268A 0.59 TCGA-P3-A6T2-01 10 99696030 99696030 C T CRTAC1 Silent p.A106A 0.16 TCGA-P3-A6T2-01 11 102713001 102713001 T G MMP3 Missense_Mutation p.D170A 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-P3-A6T2-01 11 121028675 121028675 C T TECTA Silent p.R1477R 0.26 TCGA-P3-A6T2-01 11 123901133 123901133 T C OR10G8 Silent p.D268D 0.41 TCGA-P3-A6T2-01 11 124266319 124266319 C G OR8B3 Missense_Mutation p.R310T 0.44 deleterious_low_confidence(0.02) benign(0.103) TCGA-P3-A6T2-01 11 1619512 1619512 A C KRTAP5-2 5'UTR 0.18 TCGA-P3-A6T2-01 11 44073268 44073268 C T ACCSL Silent p.G257G 0.21 TCGA-P3-A6T2-01 11 534288 534288 C A HRAS Missense_Mutation p.G12V 0.60 deleterious(0) possibly_damaging(0.674) TCGA-P3-A6T2-01 11 534289 534289 C A HRAS Missense_Mutation p.G12C 0.63 deleterious(0.04) possibly_damaging(0.629) TCGA-P3-A6T2-01 11 55653083 55653083 G A TRIM51 Missense_Mutation p.R60Q 0.32 tolerated(0.73) benign(0.006) TCGA-P3-A6T2-01 11 62572935 62572935 C T NXF1 5'UTR 0.25 TCGA-P3-A6T2-01 11 64884964 64884964 G A ZNHIT2 Silent p.L54L 0.40 TCGA-P3-A6T2-01 12 46231438 46231438 G A ARID2 Silent p.T426T 0.22 TCGA-P3-A6T2-01 12 46245690 46245690 A - ARID2 Frame_Shift_Del p.I1263Lfs*32 0.46 TCGA-P3-A6T2-01 12 47629897 47629897 G T PCED1B Missense_Mutation p.D351Y 0.74 tolerated(0.17) possibly_damaging(0.894) TCGA-P3-A6T2-01 13 101257365 101257365 G A TMTC4 Silent p.D722D 0.35 TCGA-P3-A6T2-01 13 21382702 21382702 T C XPO4 Silent p.V504V 0.37 TCGA-P3-A6T2-01 13 50234999 50234999 C G EBPL 3'UTR 0.45 TCGA-P3-A6T2-01 14 105411705 105411705 A G AHNAK2 Silent p.P3361P 0.44 TCGA-P3-A6T2-01 14 106236252 106236252 G T IGHG3 Silent p.R185R 0.33 TCGA-P3-A6T2-01 14 19574339 19574339 G A POTEG Missense_Mutation p.E466K 0.36 tolerated(0.08) benign(0.011) TCGA-P3-A6T2-01 14 21424307 21424307 C T RNASE2 Missense_Mutation p.A126V 0.34 tolerated(0.1) benign(0.072) TCGA-P3-A6T2-01 14 24780618 24780618 G A LTB4R2 Missense_Mutation p.A250T 0.45 deleterious(0.02) possibly_damaging(0.851) TCGA-P3-A6T2-01 14 57857978 57857978 C G NAA30 Silent p.L101L 0.31 TCGA-P3-A6T2-01 14 91369252 91369252 C A RPS6KA5 Missense_Mutation p.R340L 0.25 tolerated(0.08) benign(0.036) TCGA-P3-A6T2-01 16 18882803 18882803 T A SMG1 Nonsense_Mutation p.K729* 0.54 TCGA-P3-A6T2-01 16 22268675 22268675 G A EEF2K Silent p.E290E 0.31 TCGA-P3-A6T2-01 17 16012097 16012097 T C NCOR1 Intron 0.29 TCGA-P3-A6T2-01 17 18397740 18397740 C T LGALS9C 3'UTR 0.22 TCGA-P3-A6T2-01 17 7577090 7577090 C G TP53 Missense_Mutation p.R283P 0.46 deleterious(0.01) probably_damaging(0.978) TCGA-P3-A6T2-01 17 7577506 7577506 C T TP53 Missense_Mutation p.D259N 0.37 tolerated(0.25) probably_damaging(0.947) TCGA-P3-A6T2-01 18 5293308 5293308 G A ZBTB14 5'UTR 0.35 TCGA-P3-A6T2-01 19 40399722 40399722 C T FCGBP Silent p.A1991A 0.56 TCGA-P3-A6T2-01 1 110734821 110734821 G A SLC6A17 Silent p.E364E 0.35 TCGA-P3-A6T2-01 1 159804960 159804960 G A C1orf204 3'UTR 0.43 TCGA-P3-A6T2-01 1 16357047 16357047 C T CLCNKA Silent p.P500P 0.25 TCGA-P3-A6T2-01 1 169256566 169256566 A G NME7 Silent p.I243I 0.38 TCGA-P3-A6T2-01 1 186276363 186276363 G T PRG4 Missense_Mutation p.K504N 0.37 unknown(0) TCGA-P3-A6T2-01 1 201915517 201915517 G T LMOD1 5'UTR 0.18 TCGA-P3-A6T2-01 1 22222715 22222715 G A HSPG2 Missense_Mutation p.S51L 0.36 benign(0.003) TCGA-P3-A6T2-01 20 1629785 1629785 C T SIRPG Missense_Mutation p.G115S 0.31 deleterious(0) probably_damaging(1) TCGA-P3-A6T2-01 20 31025223 31025223 C T ASXL1 3'UTR 0.45 TCGA-P3-A6T2-01 21 38853118 38853118 C T DYRK1A Missense_Mutation p.S169F 0.37 deleterious(0) probably_damaging(0.997) TCGA-P3-A6T2-01 22 16266942 16266942 C T POTEH Missense_Mutation p.E503K 0.17 tolerated(0.09) benign(0.007) TCGA-P3-A6T2-01 22 36690235 36690235 C G MYH9 Missense_Mutation p.R1247P 0.34 possibly_damaging(0.852) TCGA-P3-A6T2-01 2 141641418 141641418 G T LRP1B Missense_Mutation p.H1379Q 0.37 benign(0.033) TCGA-P3-A6T2-01 2 202150039 202150039 C T CASP8 Nonsense_Mutation p.R494* 0.47 TCGA-P3-A6T2-01 2 228769656 228769656 C T DAW1 Silent p.A220A 0.35 TCGA-P3-A6T2-01 2 9616151 9616151 G A IAH1 Silent p.L39L 0.39 TCGA-P3-A6T2-01 3 25833227 25833227 G T OXSM Missense_Mutation p.C239F 0.32 deleterious(0) probably_damaging(0.985) TCGA-P3-A6T2-01 3 40231844 40231844 A G MYRIP Missense_Mutation p.T519A 0.40 tolerated(0.81) benign(0.004) TCGA-P3-A6T2-01 3 48506419 48506419 G A ATRIP Missense_Mutation p.D749N 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-P3-A6T2-01 4 100003216 100003216 C T ADH5 Missense_Mutation p.D56N 0.26 tolerated(0.06) benign(0.06) TCGA-P3-A6T2-01 4 169227710 169227710 G A DDX60 Silent p.F142F 0.29 TCGA-P3-A6T2-01 4 79203976 79203976 G T FRAS1 Missense_Mutation p.E370D 0.36 benign(0.001) TCGA-P3-A6T2-01 4 79372955 79372955 G A FRAS1 Missense_Mutation p.E2165K 0.34 benign(0.371) TCGA-P3-A6T2-01 5 128956418 128956418 G A ADAMTS19 Missense_Mutation p.R523Q 0.20 tolerated(0.29) benign(0.006) TCGA-P3-A6T2-01 5 140307492 140307492 G A PCDHAC1 Missense_Mutation p.E339K 0.32 deleterious(0) possibly_damaging(0.492) TCGA-P3-A6T2-01 5 156589436 156589436 C T FAM71B 3'UTR 0.22 TCGA-P3-A6T2-01 5 176940689 176940689 G A DDX41 Silent p.F365F 0.32 TCGA-P3-A6T2-01 5 22078895 22078895 A G CDH12 5'UTR 0.42 TCGA-P3-A6T2-01 5 65350201 65350201 C G ERBB2IP Missense_Mutation p.Q1019E 0.37 tolerated(1) benign(0.007) TCGA-P3-A6T2-01 6 27792079 27792079 G A HIST1H4J Silent p.L59L 0.20 TCGA-P3-A6T2-01 6 29913412 29913412 G T HLA-A 3'UTR 0.55 TCGA-P3-A6T2-01 6 47976630 47976630 G C PTCHD4 Missense_Mutation p.S216C 0.38 deleterious(0.02) possibly_damaging(0.526) TCGA-P3-A6T2-01 6 87726087 87726087 G A HTR1E Silent p.T345T 0.34 TCGA-P3-A6T2-01 7 142637512 142637512 G A C7orf34 Missense_Mutation p.M94I 0.35 deleterious(0) benign(0.216) TCGA-P3-A6T2-01 7 31378801 31378801 G T NEUROD6 Missense_Mutation p.Q28K 0.36 tolerated(0.61) benign(0.001) TCGA-P3-A6T2-01 7 86394749 86394749 G C GRM3 Missense_Mutation p.L96F 0.36 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T2-01 8 125551344 125551344 C T TATDN1 5'Flank 0.35 TCGA-P3-A6T2-01 8 70585279 70585279 C T SLCO5A1 Missense_Mutation p.R791Q 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-P3-A6T2-01 8 70594470 70594470 G A SLCO5A1 Silent p.Y577Y 0.40 TCGA-P3-A6T2-01 8 92998376 92998376 C T RUNX1T1 Missense_Mutation p.V430I 0.35 tolerated(0.23) benign(0.012) TCGA-P3-A6T2-01 9 115941031 115941031 C A FKBP15 Silent p.L655L 0.29 TCGA-P3-A6T2-01 9 132988727 132988727 C T NCS1 Silent p.S178S 0.12 TCGA-P3-A6T2-01 9 140967937 140967937 C A CACNA1B Intron 0.46 TCGA-P3-A6T2-01 9 72758597 72758597 A T MAMDC2 Missense_Mutation p.L422F 0.55 tolerated(0.73) benign(0.009) TCGA-P3-A6T2-01 9 90500052 90500052 C T SPATA31E1 Missense_Mutation p.S217L 0.56 deleterious(0) possibly_damaging(0.684) TCGA-P3-A6T2-01 X 135405026 135405026 C T GPR112 Nonsense_Mutation p.R54* 0.75 TCGA-P3-A6T2-01 X 147985764 147985764 C A AFF2 Missense_Mutation p.A458E 0.70 deleterious(0.01) possibly_damaging(0.658) TCGA-P3-A6T2-01 X 73067831 73067831 C T XIST RNA 0.78 TCGA-P3-A6T2-01 X 76814257 76814257 A G ATRX Silent p.A2129A 0.70 TCGA-P3-A6T3-01 10 101474253 101474253 C G COX15 3'UTR 0.25 TCGA-P3-A6T3-01 10 101489468 101489468 C G COX15 Missense_Mutation p.L38F 0.24 tolerated(0.14) benign(0.157) TCGA-P3-A6T3-01 10 101716803 101716803 G A DNMBP Missense_Mutation p.P143L 0.20 deleterious(0) probably_damaging(1) TCGA-P3-A6T3-01 10 115970681 115970681 G A TDRD1 Missense_Mutation p.D539N 0.24 tolerated(0.29) probably_damaging(0.981) TCGA-P3-A6T3-01 10 15647732 15647732 G A ITGA8 Missense_Mutation p.S654L 0.16 deleterious(0) possibly_damaging(0.733) TCGA-P3-A6T3-01 10 69934314 69934314 G T MYPN Missense_Mutation p.R822L 0.17 tolerated(0.09) possibly_damaging(0.604) TCGA-P3-A6T3-01 10 97452743 97452743 G A TCTN3 Missense_Mutation p.P145S 0.06 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T3-01 11 5776386 5776386 C A OR52N4 Missense_Mutation p.T139N 0.10 deleterious(0.04) benign(0.076) TCGA-P3-A6T3-01 11 62340160 62340160 G A EEF1G Nonsense_Mutation p.Q23* 0.14 TCGA-P3-A6T3-01 11 75298484 75298484 G T MAP6 Missense_Mutation p.P688T 0.07 tolerated_low_confidence(0.1) benign(0.01) TCGA-P3-A6T3-01 11 7846689 7846689 G C OR5P3 Missense_Mutation p.F277L 0.14 deleterious(0.02) benign(0.12) TCGA-P3-A6T3-01 11 94911876 94911876 G C SESN3 Missense_Mutation p.Q352E 0.19 deleterious(0) benign(0.345) TCGA-P3-A6T3-01 12 104171558 104171558 C T NT5DC3 3'UTR 0.16 TCGA-P3-A6T3-01 12 120789176 120789176 G T MSI1 Missense_Mutation p.P254Q 0.08 tolerated(0.19) possibly_damaging(0.694) TCGA-P3-A6T3-01 12 133312019 133312019 G A ANKLE2 Missense_Mutation p.P558L 0.21 tolerated(0.37) benign(0.181) TCGA-P3-A6T3-01 12 57662214 57662214 A G R3HDM2 Silent p.N620N 0.25 TCGA-P3-A6T3-01 12 96370416 96370416 G C HAL Missense_Mutation p.P575A 0.21 tolerated(0.36) possibly_damaging(0.631) TCGA-P3-A6T3-01 13 113975980 113975980 C T LAMP1 Missense_Mutation p.S351L 0.15 tolerated(0.52) benign(0.259) TCGA-P3-A6T3-01 13 35672472 35672472 G A NBEA Missense_Mutation p.S537N 0.73 tolerated(0.82) benign(0.016) TCGA-P3-A6T3-01 14 50935382 50935382 G T MAP4K5 Missense_Mutation p.L221I 0.17 deleterious(0.03) possibly_damaging(0.828) TCGA-P3-A6T3-01 14 90509416 90509416 C T TDP1 Missense_Mutation p.R586W 0.30 deleterious(0) possibly_damaging(0.767) TCGA-P3-A6T3-01 15 51772275 51772275 G A DMXL2 Missense_Mutation p.S2209L 0.21 tolerated(0.82) probably_damaging(0.999) TCGA-P3-A6T3-01 15 57823951 57823951 G C CGNL1 Missense_Mutation p.E1089Q 0.20 deleterious(0.04) possibly_damaging(0.799) TCGA-P3-A6T3-01 15 73925519 73925519 G A NPTN Missense_Mutation p.S13L 0.19 tolerated(0.18) unknown(0) TCGA-P3-A6T3-01 15 89719083 89719083 G C ABHD2 Missense_Mutation p.K193N 0.18 tolerated(0.48) benign(0.027) TCGA-P3-A6T3-01 16 1364314 1364314 A C UBE2I Silent p.T29T 0.33 TCGA-P3-A6T3-01 16 16142160 16142160 G A ABCC1 Silent p.L460L 0.19 TCGA-P3-A6T3-01 16 30533045 30533045 C G ITGAL 3'UTR 0.15 TCGA-P3-A6T3-01 16 4755233 4755233 G C ANKS3 Missense_Mutation p.S244C 0.20 deleterious(0) probably_damaging(0.935) TCGA-P3-A6T3-01 16 4881985 4881985 C T GLYR1 Missense_Mutation p.E178K 0.18 tolerated(0.23) benign(0.081) TCGA-P3-A6T3-01 16 55883641 55883641 G C CES5A Missense_Mutation p.Q469E 0.34 deleterious(0.03) benign(0.022) TCGA-P3-A6T3-01 16 81972454 81972454 C A PLCG2 Missense_Mutation p.P1083T 0.14 deleterious(0) probably_damaging(1) TCGA-P3-A6T3-01 16 84906615 84906615 C T CRISPLD2 Silent p.R333R 0.33 TCGA-P3-A6T3-01 16 85721081 85721081 C G GINS2 Missense_Mutation p.E64Q 0.14 tolerated(0.06) benign(0.004) TCGA-P3-A6T3-01 16 89261437 89261437 C T CDH15 Silent p.F773F 0.23 TCGA-P3-A6T3-01 16 89357577 89357577 C A ANKRD11 Nonsense_Mutation p.E81* 0.10 TCGA-P3-A6T3-01 17 29220963 29220963 G T ATAD5 Missense_Mutation p.D1698Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-P3-A6T3-01 17 4848464 4848464 G A RNF167 3'UTR 0.17 TCGA-P3-A6T3-01 17 54535256 54535256 G A ANKFN1 Silent p.L494L 0.24 TCGA-P3-A6T3-01 17 6373655 6373655 G T PITPNM3 Silent p.P566P 0.49 TCGA-P3-A6T3-01 17 7329557 7329557 C G C17orf74 Missense_Mutation p.Q83E 0.21 deleterious(0.02) benign(0.388) TCGA-P3-A6T3-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.34 TCGA-P3-A6T3-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.34 deleterious(0) probably_damaging(1) TCGA-P3-A6T3-01 17 78320894 78320894 C T RNF213 Missense_Mutation p.S2920L 0.23 probably_damaging(0.998) TCGA-P3-A6T3-01 17 78321708 78321708 C A RNF213 Silent p.L3191L 0.18 TCGA-P3-A6T3-01 17 8193054 8193054 C A RANGRF Intron 0.16 TCGA-P3-A6T3-01 18 10471966 10471966 G A APCDD1 Missense_Mutation p.E228K 0.18 tolerated(0.06) benign(0.294) TCGA-P3-A6T3-01 18 19405849 19405849 A G MIB1 Intron 0.55 TCGA-P3-A6T3-01 18 72103933 72103933 G A FAM69C Missense_Mutation p.R355C 0.17 deleterious(0) probably_damaging(0.988) TCGA-P3-A6T3-01 18 8819162 8819162 G A SOGA2 Missense_Mutation p.E1021K 0.14 deleterious(0) probably_damaging(0.967) TCGA-P3-A6T3-01 19 12902541 12902541 G C JUNB 5'UTR 0.59 TCGA-P3-A6T3-01 19 3979393 3979393 G A EEF2 Silent p.A549A 0.41 TCGA-P3-A6T3-01 19 41808584 41808584 C T HNRNPUL1 Missense_Mutation p.P568S 0.15 deleterious(0) unknown(0) TCGA-P3-A6T3-01 19 47969076 47969076 C T SLC8A2 Silent p.L195L 0.34 TCGA-P3-A6T3-01 19 49468669 49468669 C T FTL 5'UTR 0.55 TCGA-P3-A6T3-01 19 49468704 49468704 C T FTL 5'UTR 0.31 TCGA-P3-A6T3-01 19 50333342 50333342 C G MED25 Intron 0.18 TCGA-P3-A6T3-01 19 52496987 52496987 G A ZNF615 Nonsense_Mutation p.R459* 0.09 TCGA-P3-A6T3-01 19 8028517 8028517 G A ELAVL1 Silent p.R277R 0.45 TCGA-P3-A6T3-01 1 11856353 11856353 G T MTHFR Missense_Mutation p.F230L 0.30 deleterious(0) probably_damaging(1) TCGA-P3-A6T3-01 1 149857997 149857997 G C HIST2H2BE Missense_Mutation p.S65C 0.20 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-P3-A6T3-01 1 155922435 155922435 C G ARHGEF2 Missense_Mutation p.Q656H 0.15 tolerated(0.08) benign(0.001) TCGA-P3-A6T3-01 1 1565827 1565827 G A MIB2 Missense_Mutation p.A1044T 0.16 tolerated(0.39) possibly_damaging(0.815) TCGA-P3-A6T3-01 1 157068947 157068947 C T ETV3L Silent p.L94L 0.19 TCGA-P3-A6T3-01 1 158815706 158815706 C T MNDA Silent p.I300I 0.43 TCGA-P3-A6T3-01 1 161167833 161167833 G A ADAMTS4 Silent p.N195N 0.17 TCGA-P3-A6T3-01 1 173526508 173526508 C T SLC9C2 Missense_Mutation p.A396T 0.11 tolerated(0.07) benign(0.132) TCGA-P3-A6T3-01 1 200956005 200956005 C G KIF21B Missense_Mutation p.R1219T 0.26 deleterious(0.03) probably_damaging(0.983) TCGA-P3-A6T3-01 1 205053453 205053453 C T TMEM81 5'UTR 0.06 TCGA-P3-A6T3-01 1 205687512 205687512 C A NUCKS1 Nonsense_Mutation p.E210* 0.12 TCGA-P3-A6T3-01 1 205687518 205687518 C T NUCKS1 Missense_Mutation p.E208K 0.12 deleterious(0.03) possibly_damaging(0.486) TCGA-P3-A6T3-01 1 226574040 226574040 G A PARP1 Missense_Mutation p.S274F 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-P3-A6T3-01 1 226836413 226836413 G C ITPKB Missense_Mutation p.F664L 0.23 deleterious(0.04) probably_damaging(0.945) TCGA-P3-A6T3-01 1 234454536 234454536 G C SLC35F3 Missense_Mutation p.E332Q 0.18 tolerated(0.47) probably_damaging(0.999) TCGA-P3-A6T3-01 1 234529144 234529144 G A TARBP1 Silent p.L1508L 0.10 TCGA-P3-A6T3-01 1 235993528 235993528 G A LYST Nonsense_Mutation p.Q64* 0.25 TCGA-P3-A6T3-01 1 46870755 46870755 C G FAAH Missense_Mutation p.Q127E 0.21 tolerated(1) benign(0.044) TCGA-P3-A6T3-01 1 51910602 51910602 G C EPS15 Missense_Mutation p.P305A 0.34 tolerated(0.22) benign(0.026) TCGA-P3-A6T3-01 1 63064454 63064454 C T ANGPTL3 Nonsense_Mutation p.Q195* 0.17 TCGA-P3-A6T3-01 1 7993298 7993298 G T TNFRSF9 Missense_Mutation p.F201L 0.06 tolerated(0.63) benign(0.003) TCGA-P3-A6T3-01 20 1629713 1629713 C T SIRPG Missense_Mutation p.E139K 0.15 tolerated(0.28) benign(0.008) TCGA-P3-A6T3-01 20 25284224 25284224 C A ABHD12 Nonsense_Mutation p.E331* 0.17 TCGA-P3-A6T3-01 20 3052340 3052340 C T OXT Silent p.L13L 0.29 TCGA-P3-A6T3-01 20 33328669 33328669 C T NCOA6 Silent p.L1797L 0.15 TCGA-P3-A6T3-01 21 15352138 15352138 G A ANKRD20A11P RNA 0.26 TCGA-P3-A6T3-01 22 21799304 21799304 G A HIC2 Silent p.R40R 0.30 TCGA-P3-A6T3-01 22 25121477 25121477 T C PIWIL3 Missense_Mutation p.Y681C 0.37 deleterious(0) probably_damaging(0.921) TCGA-P3-A6T3-01 22 38027078 38027078 C G GGA1 Missense_Mutation p.I500M 0.15 deleterious(0) benign(0.104) TCGA-P3-A6T3-01 22 38211742 38211742 A G GCAT Missense_Mutation p.N322S 0.14 deleterious(0) probably_damaging(0.973) TCGA-P3-A6T3-01 22 41918852 41918852 C T ACO2 Missense_Mutation p.T386I 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-P3-A6T3-01 2 114256927 114256927 G C FOXD4L1 Missense_Mutation p.E32Q 0.23 deleterious(0.04) benign(0.106) TCGA-P3-A6T3-01 2 179425532 179425532 C T TTN Missense_Mutation p.V28443I 0.33 TCGA-P3-A6T3-01 2 185800982 185800982 G A ZNF804A Missense_Mutation p.D287N 0.21 tolerated(0.11) possibly_damaging(0.516) TCGA-P3-A6T3-01 2 197636551 197636551 C T GTF3C3 Silent p.L727L 0.16 TCGA-P3-A6T3-01 2 231264947 231264947 G C SP140L Missense_Mutation p.E435Q 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-P3-A6T3-01 2 235404810 235404810 C T ARL4C Missense_Mutation p.E141K 0.19 tolerated(0.15) possibly_damaging(0.908) TCGA-P3-A6T3-01 2 242572369 242572369 G A THAP4 Silent p.S401S 0.19 TCGA-P3-A6T3-01 2 69092649 69092649 T - BMP10 3'UTR 0.25 TCGA-P3-A6T3-01 3 113623085 113623085 A G GRAMD1C Missense_Mutation p.E252G 0.24 tolerated(0.07) benign(0.049) TCGA-P3-A6T3-01 3 129233286 129233286 G A IFT122 Silent p.L1065L 0.18 TCGA-P3-A6T3-01 3 133653511 133653511 G A SLCO2A1 3'UTR 0.17 TCGA-P3-A6T3-01 3 134264494 134264494 C T CEP63 Missense_Mutation p.H208Y 0.17 deleterious(0) possibly_damaging(0.815) TCGA-P3-A6T3-01 3 186505468 186505468 G C EIF4A2 Intron 0.19 TCGA-P3-A6T3-01 3 3085380 3085380 G A CNTN4 Missense_Mutation p.G935R 0.12 deleterious(0) benign(0.026) TCGA-P3-A6T3-01 3 52255539 52255539 G A TLR9 Silent p.R1085R 0.51 TCGA-P3-A6T3-01 3 55508406 55508406 G A WNT5A Missense_Mutation p.R215C 0.58 deleterious(0) probably_damaging(0.954) TCGA-P3-A6T3-01 4 169846389 169846389 C T PALLD Nonsense_Mutation p.R1122* 0.19 TCGA-P3-A6T3-01 4 187455656 187455656 C T MTNR1A Silent p.P80P 0.16 TCGA-P3-A6T3-01 4 24578255 24578255 G A DHX15 Nonsense_Mutation p.R40* 0.39 TCGA-P3-A6T3-01 4 42022469 42022469 A G SLC30A9 Missense_Mutation p.K124R 0.16 tolerated(0.12) benign(0.015) TCGA-P3-A6T3-01 5 26903856 26903856 C G CDH9 Missense_Mutation p.V297L 0.14 tolerated(0.53) benign(0.001) TCGA-P3-A6T3-01 5 41159280 41159280 C A C6 Missense_Mutation p.R587L 0.11 deleterious(0) probably_damaging(1) TCGA-P3-A6T3-01 6 100395746 100395746 C G MCHR2 Missense_Mutation p.R95P 0.21 tolerated(0.16) possibly_damaging(0.829) TCGA-P3-A6T3-01 6 150267599 150267599 C A ULBP2 Silent p.I147I 0.03 TCGA-P3-A6T3-01 6 167753961 167753961 C T TTLL2 Silent p.F191F 0.20 TCGA-P3-A6T3-01 6 1726714 1726714 C T GMDS Missense_Mutation p.R308K 0.09 tolerated_low_confidence(0.31) benign(0) TCGA-P3-A6T3-01 6 29627131 29627131 C T MOG Missense_Mutation p.R42W 0.15 tolerated(0.07) benign(0.041) TCGA-P3-A6T3-01 6 3085632 3085632 G T RIPK1 Silent p.P276P 0.35 TCGA-P3-A6T3-01 6 44197355 44197355 G C SLC29A1 Missense_Mutation p.Q47H 0.16 tolerated(0.22) benign(0.002) TCGA-P3-A6T3-01 6 46826630 46826630 G A GPR116 Missense_Mutation p.P1004S 0.08 tolerated(0.23) benign(0.02) TCGA-P3-A6T3-01 6 71603971 71603971 C T B3GAT2 Missense_Mutation p.R199Q 0.10 deleterious(0) probably_damaging(0.99) TCGA-P3-A6T3-01 6 74227810 74227810 C G EEF1A1 Missense_Mutation p.D403H 0.21 tolerated_low_confidence(0.05) possibly_damaging(0.642) TCGA-P3-A6T3-01 6 90399691 90399691 G C MDN1 Missense_Mutation p.Q3641E 0.20 benign(0.328) TCGA-P3-A6T3-01 7 117067573 117067573 G A ASZ1 5'UTR 0.10 TCGA-P3-A6T3-01 7 134261178 134261178 C A AKR1B15 Missense_Mutation p.A274D 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-P3-A6T3-01 7 150776710 150776710 G A FASTK Missense_Mutation p.R128W 0.22 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-P3-A6T3-01 7 38424385 38424385 C T AMPH 3'UTR 0.38 TCGA-P3-A6T3-01 7 44228611 44228611 A C GCK 5'UTR 0.16 TCGA-P3-A6T3-01 7 56020972 56020972 G C MRPS17 Silent p.V28V 0.14 TCGA-P3-A6T3-01 7 82584223 82584223 C G PCLO Missense_Mutation p.E2016Q 0.22 unknown(0) TCGA-P3-A6T3-01 7 86415945 86415945 C G GRM3 Missense_Mutation p.D279E 0.09 tolerated(0.66) benign(0.015) TCGA-P3-A6T3-01 7 99084299 99084299 C G ZNF789 Missense_Mutation p.Q156E 0.18 tolerated(0.12) benign(0.283) TCGA-P3-A6T3-01 8 120774829 120774829 C T TAF2 Missense_Mutation p.R795H 0.12 deleterious(0) possibly_damaging(0.832) TCGA-P3-A6T3-01 9 113703978 113703978 C T LPAR1 Nonsense_Mutation p.W172* 0.24 TCGA-P3-A6T3-01 9 136249652 136249652 G A C9orf96 Missense_Mutation p.D63N 0.22 deleterious(0) possibly_damaging(0.805) TCGA-P3-A6T3-01 9 15623319 15623319 G C CCDC171 Missense_Mutation p.E244Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T3-01 9 21971138 21971138 C T CDKN2A Missense_Mutation p.D74N 0.76 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T3-01 9 5185550 5185550 C T INSL6 Missense_Mutation p.R18Q 0.13 tolerated(0.34) possibly_damaging(0.602) TCGA-P3-A6T3-01 X 19410511 19410511 C G MAP3K15 Missense_Mutation p.E759Q 0.27 tolerated(0.25) benign(0.419) TCGA-P3-A6T4-01 10 104590527 104590527 C G CYP17A1 Missense_Mutation p.D487H 0.16 tolerated(0.15) benign(0.046) TCGA-P3-A6T4-01 10 116697970 116697970 C G TRUB1 5'UTR 0.33 TCGA-P3-A6T4-01 10 118030416 118030416 G C GFRA1 Silent p.L84L 0.25 TCGA-P3-A6T4-01 10 12077490 12077490 A G UPF2 5'UTR 0.15 TCGA-P3-A6T4-01 10 30918635 30918635 C A LYZL2 5'UTR 0.26 TCGA-P3-A6T4-01 10 52595975 52595975 C T A1CF Missense_Mutation p.E163K 0.06 deleterious(0.01) probably_damaging(0.913) TCGA-P3-A6T4-01 10 60936594 60936594 C T PHYHIPL 5'UTR 0.25 TCGA-P3-A6T4-01 10 72294536 72294536 G C PALD1 Silent p.L388L 0.09 TCGA-P3-A6T4-01 11 108029600 108029600 C G NPAT 3'UTR 0.17 TCGA-P3-A6T4-01 11 116692154 116692154 T C APOA4 Missense_Mutation p.E207G 0.41 tolerated(0.11) benign(0.085) TCGA-P3-A6T4-01 11 118361956 118361956 A G KMT2A Missense_Mutation p.Y1581C 0.45 probably_damaging(0.999) TCGA-P3-A6T4-01 11 120998954 120998954 G A TECTA Silent p.K756K 0.05 TCGA-P3-A6T4-01 11 61136000 61136000 G T TMEM138 Intron 0.19 TCGA-P3-A6T4-01 11 65766195 65766195 G A EIF1AD Missense_Mutation p.P125S 0.28 tolerated(0.67) benign(0.005) TCGA-P3-A6T4-01 11 67132766 67132766 A T CLCF1 Silent p.P173P 0.21 TCGA-P3-A6T4-01 11 73101946 73101946 C G RELT Silent p.L89L 0.32 TCGA-P3-A6T4-01 12 22826466 22826466 G C ETNK1 Missense_Mutation p.D362H 0.09 tolerated(0.08) possibly_damaging(0.839) TCGA-P3-A6T4-01 12 29485599 29485599 A T FAR2 Nonsense_Mutation p.K442* 0.31 TCGA-P3-A6T4-01 12 42555436 42555436 T A YAF2 Missense_Mutation p.K119M 0.21 deleterious(0) probably_damaging(0.974) TCGA-P3-A6T4-01 12 49434900 49434900 G - KMT2D Frame_Shift_Del p.P2218Lfs*46 0.15 TCGA-P3-A6T4-01 12 52451243 52451243 C G NR4A1 Nonsense_Mutation p.S503* 0.29 TCGA-P3-A6T4-01 12 53585302 53585302 C A ITGB7 3'UTR 0.31 TCGA-P3-A6T4-01 12 56436379 56436379 C G RPS26 Silent p.V58V 0.27 TCGA-P3-A6T4-01 12 57167906 57167906 C T HSD17B6 Silent p.I90I 0.30 TCGA-P3-A6T4-01 12 57911229 57911229 A - DDIT3 Frame_Shift_Del p.P11Lfs*76 0.20 TCGA-P3-A6T4-01 12 58140501 58140501 G T TSPAN31 Missense_Mutation p.A148S 0.15 tolerated(0.32) benign(0.098) TCGA-P3-A6T4-01 12 71056307 71056307 C T PTPRR Missense_Mutation p.D526N 0.22 tolerated(0.12) benign(0.002) TCGA-P3-A6T4-01 12 96683014 96683014 A G CDK17 Missense_Mutation p.V350A 0.05 deleterious(0) probably_damaging(1) TCGA-P3-A6T4-01 14 21870238 21870238 C G CHD8 Missense_Mutation p.A1314P 0.15 deleterious(0) probably_damaging(0.996) TCGA-P3-A6T4-01 15 34159749 34159749 G A AVEN Missense_Mutation p.T307M 0.47 tolerated(0.22) benign(0.296) TCGA-P3-A6T4-01 15 43075781 43075781 C T TTBK2 Missense_Mutation p.E345K 0.20 deleterious(0.02) probably_damaging(0.978) TCGA-P3-A6T4-01 15 44776530 44776530 C T CTDSPL2 Nonsense_Mutation p.R99* 0.16 TCGA-P3-A6T4-01 15 62170909 62170909 C T VPS13C Missense_Mutation p.E3347K 0.23 deleterious(0.04) benign(0.005) TCGA-P3-A6T4-01 15 86810286 86810286 G C AGBL1 Missense_Mutation p.R560P 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-P3-A6T4-01 16 23678485 23678485 G C DCTN5 3'UTR 0.13 TCGA-P3-A6T4-01 16 24902354 24902354 G C SLC5A11 Missense_Mutation p.G277R 0.27 deleterious(0.01) probably_damaging(1) TCGA-P3-A6T4-01 16 27373640 27373640 G A IL4R Missense_Mutation p.D323N 0.18 tolerated(0.11) benign(0.073) TCGA-P3-A6T4-01 16 27475887 27475887 C T GTF3C1 Missense_Mutation p.E1876K 0.17 tolerated(0.19) benign(0.003) TCGA-P3-A6T4-01 16 28600485 28600485 G C CCDC101 Missense_Mutation p.A97P 0.13 tolerated(0.12) benign(0.445) TCGA-P3-A6T4-01 16 30762605 30762605 G A PHKG2 Intron 0.23 TCGA-P3-A6T4-01 16 4910834 4910834 G A UBN1 Missense_Mutation p.E281K 0.31 tolerated(0.13) benign(0.242) TCGA-P3-A6T4-01 16 50659473 50659473 C T NKD1 Silent p.N148N 0.30 TCGA-P3-A6T4-01 16 58741998 58741998 C G GOT2 3'UTR 0.32 TCGA-P3-A6T4-01 16 630911 630911 C T PIGQ Silent p.L490L 0.27 TCGA-P3-A6T4-01 16 66586549 66586549 C T CKLF 5'UTR 0.10 TCGA-P3-A6T4-01 16 81053755 81053755 T C CENPN Silent p.I135I 0.10 TCGA-P3-A6T4-01 16 89805657 89805657 C T FANCA Missense_Mutation p.E1351K 0.16 tolerated(0.46) benign(0.292) TCGA-P3-A6T4-01 17 1586992 1586992 C G PRPF8 Missense_Mutation p.R35P 0.05 deleterious_low_confidence(0) benign(0.259) TCGA-P3-A6T4-01 17 171158 171158 C A RPH3AL Missense_Mutation p.R42S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-P3-A6T4-01 17 30685575 30685575 C G ZNF207 Missense_Mutation p.D74E 0.07 deleterious(0.01) possibly_damaging(0.866) TCGA-P3-A6T4-01 17 3481024 3481024 C T SHPK Silent p.V527V 0.72 TCGA-P3-A6T4-01 17 48646541 48646541 A G CACNA1G Missense_Mutation p.I124V 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-P3-A6T4-01 17 58734061 58734061 C G PPM1D Missense_Mutation p.I373M 0.16 deleterious(0) probably_damaging(0.977) TCGA-P3-A6T4-01 17 58740401 58740402 - T PPM1D Frame_Shift_Ins p.P437Tfs*6 0.37 TCGA-P3-A6T4-01 17 62018476 62018476 G C SCN4A Silent p.L1722L 0.13 TCGA-P3-A6T4-01 17 7330660 7330660 G T C17orf74 Silent p.R450R 0.50 TCGA-P3-A6T4-01 17 7330661 7330661 A T C17orf74 Missense_Mutation p.N451Y 0.50 deleterious(0) probably_damaging(0.955) TCGA-P3-A6T4-01 17 73487865 73487865 C T KIAA0195 Missense_Mutation p.P494S 0.08 tolerated(0.09) benign(0.003) TCGA-P3-A6T4-01 17 7578234 7578234 A T TP53 Nonsense_Mutation p.Y205* 0.48 TCGA-P3-A6T4-01 19 10461534 10461534 G A TYK2 Silent p.A1180A 0.22 TCGA-P3-A6T4-01 19 11979383 11979383 A G ZNF439 Silent p.%3D 0.20 TCGA-P3-A6T4-01 19 17895634 17895634 C T FCHO1 Missense_Mutation p.P776L 0.26 tolerated(0.05) benign(0.281) TCGA-P3-A6T4-01 19 23405909 23405909 T - ZNF724P Frame_Shift_Del p.T380Lfs*63 0.16 TCGA-P3-A6T4-01 19 33077895 33077895 G C PDCD5 Intron 0.23 TCGA-P3-A6T4-01 19 38102635 38102635 G A ZNF540 Missense_Mutation p.D152N 0.14 tolerated(0.37) benign(0.003) TCGA-P3-A6T4-01 19 38189766 38189766 T C ZNF607 Silent p.K422K 0.30 TCGA-P3-A6T4-01 19 39694707 39694707 C T SYCN Missense_Mutation p.G63D 0.12 tolerated(0.18) benign(0.036) TCGA-P3-A6T4-01 19 42509942 42509942 G C GRIK5 Silent p.L732L 0.13 TCGA-P3-A6T4-01 19 42728938 42728938 A - ZNF526 Frame_Shift_Del p.D128Vfs*41 0.23 TCGA-P3-A6T4-01 19 43349256 43349256 G T PSG10P RNA 0.12 TCGA-P3-A6T4-01 19 45767945 45767945 A T MARK4 Missense_Mutation p.K120M 0.26 deleterious(0) benign(0.294) TCGA-P3-A6T4-01 19 49228160 49228160 C G RASIP1 Missense_Mutation p.E729Q 0.14 tolerated(0.62) possibly_damaging(0.621) TCGA-P3-A6T4-01 19 53056417 53056417 A G ZNF808 Missense_Mutation p.E83G 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-P3-A6T4-01 19 57176221 57176221 C T ZNF835 Missense_Mutation p.G116R 0.23 deleterious(0.03) probably_damaging(0.982) TCGA-P3-A6T4-01 19 58102053 58102053 G A ZIK1 Missense_Mutation p.E292K 0.16 deleterious(0) possibly_damaging(0.873) TCGA-P3-A6T4-01 19 7117406 7117406 G T INSR Silent p.R1270R 0.43 TCGA-P3-A6T4-01 1 117487663 117487663 G A PTGFRN Missense_Mutation p.E261K 0.16 tolerated(1) probably_damaging(0.998) TCGA-P3-A6T4-01 1 12776164 12776164 C G AADACL3 5'UTR 0.20 TCGA-P3-A6T4-01 1 12837499 12837499 G A PRAMEF12 Silent p.L403L 0.20 TCGA-P3-A6T4-01 1 144931530 144931530 C A PDE4DIP Intron 0.12 TCGA-P3-A6T4-01 1 146397451 146397451 G C NBPF12 Missense_Mutation p.E90Q 0.06 possibly_damaging(0.617) TCGA-P3-A6T4-01 1 150432681 150432681 G A RPRD2 Silent p.V433V 0.14 TCGA-P3-A6T4-01 1 152282048 152282048 G C FLG Missense_Mutation p.H1772D 0.13 benign(0.227) TCGA-P3-A6T4-01 1 152282445 152282445 A G FLG Silent p.D1639D 0.31 TCGA-P3-A6T4-01 1 152328285 152328285 T A FLG2 Silent p.G659G 0.07 TCGA-P3-A6T4-01 1 153347014 153347014 A T S100A12 Missense_Mutation p.S19T 0.34 deleterious(0) probably_damaging(0.997) TCGA-P3-A6T4-01 1 153907336 153907336 C G DENND4B Missense_Mutation p.L891F 0.04 deleterious(0.01) probably_damaging(0.917) TCGA-P3-A6T4-01 1 158985713 158985713 C T IFI16 Missense_Mutation p.S106L 0.08 tolerated(0.08) benign(0.078) TCGA-P3-A6T4-01 1 179887434 179887434 C G TOR1AIP1 3'UTR 0.14 TCGA-P3-A6T4-01 1 196251476 196251476 T A KCNT2 Missense_Mutation p.K903M 0.18 deleterious(0) probably_damaging(0.991) TCGA-P3-A6T4-01 1 196367733 196367733 C G KCNT2 Missense_Mutation p.Q418H 0.11 deleterious(0.05) probably_damaging(0.993) TCGA-P3-A6T4-01 1 215901581 215901581 T A USH2A Missense_Mutation p.S3953C 0.19 probably_damaging(0.999) TCGA-P3-A6T4-01 1 223284667 223284667 T C TLR5 Silent p.V569V 0.19 TCGA-P3-A6T4-01 1 227079502 227079502 C G PSEN2 Silent p.P343P 0.34 TCGA-P3-A6T4-01 1 235295103 235295103 T C RBM34 Silent p.K406K 0.20 TCGA-P3-A6T4-01 1 29652245 29652245 C A PTPRU 3'Flank 0.21 TCGA-P3-A6T4-01 1 35559686 35559686 T G ZMYM1 Splice_Site p.X32_splice 0.12 TCGA-P3-A6T4-01 1 41303341 41303341 G A KCNQ4 Missense_Mutation p.D584N 0.19 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T4-01 1 85598751 85598751 T C WDR63 3'UTR 0.41 TCGA-P3-A6T4-01 20 10630267 10630267 C G JAG1 Missense_Mutation p.E417D 0.20 tolerated(0.45) benign(0.01) TCGA-P3-A6T4-01 20 18506492 18506492 G A SEC23B Silent p.Q250Q 0.06 TCGA-P3-A6T4-01 20 23346091 23346091 C T GZF1 Silent p.F357F 0.11 TCGA-P3-A6T4-01 20 33329072 33329072 G T NCOA6 Nonsense_Mutation p.S1663* 0.35 TCGA-P3-A6T4-01 20 44314553 44314553 T A WFDC10B Intron 0.32 TCGA-P3-A6T4-01 20 4913281 4913281 C T SLC23A2 5'UTR 0.42 TCGA-P3-A6T4-01 20 49551635 49551635 G T DPM1 3'UTR 0.08 TCGA-P3-A6T4-01 21 37429429 37429429 G A SETD4 Silent p.N49N 0.21 TCGA-P3-A6T4-01 22 19343784 19343784 C T HIRA Silent p.V808V 0.13 TCGA-P3-A6T4-01 22 19343812 19343812 C G HIRA Splice_Site p.X799_splice 0.12 TCGA-P3-A6T4-01 22 25331240 25331240 G C TMEM211 3'UTR 0.18 TCGA-P3-A6T4-01 22 37876266 37876266 C T MFNG Missense_Mutation p.E126K 0.26 deleterious(0) probably_damaging(1) TCGA-P3-A6T4-01 22 39812816 39812816 G C TAB1 Missense_Mutation p.R115S 0.14 deleterious(0) possibly_damaging(0.694) TCGA-P3-A6T4-01 22 41566478 41566478 C T EP300 Missense_Mutation p.P1452L 0.52 probably_damaging(1) TCGA-P3-A6T4-01 2 113082071 113082071 G A ZC3H6 Missense_Mutation p.M561I 0.26 tolerated(0.28) benign(0.004) TCGA-P3-A6T4-01 2 11323423 11323423 A G ROCK2 3'UTR 0.12 TCGA-P3-A6T4-01 2 131520235 131520235 G A AMER3 Missense_Mutation p.R197Q 0.09 tolerated(0.52) benign(0.001) TCGA-P3-A6T4-01 2 135095868 135095868 G T MGAT5 Missense_Mutation p.M228I 0.33 tolerated(0.16) benign(0.001) TCGA-P3-A6T4-01 2 152423811 152423811 G C NEB Silent p.V6009V 0.16 TCGA-P3-A6T4-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.25 deleterious(0) probably_damaging(1) TCGA-P3-A6T4-01 2 179589210 179589210 C G TTN Silent p.T6964T 0.20 TCGA-P3-A6T4-01 2 197708751 197708751 C G PGAP1 Missense_Mutation p.D796H 0.15 tolerated(0.06) possibly_damaging(0.497) TCGA-P3-A6T4-01 2 203748997 203748997 G A WDR12 Silent p.S304S 0.27 TCGA-P3-A6T4-01 2 21232377 21232377 G A APOB Nonsense_Mutation p.Q2455* 0.17 TCGA-P3-A6T4-01 2 233271635 233271635 G C ALPPL2 Missense_Mutation p.G11R 0.12 tolerated(0.35) possibly_damaging(0.682) TCGA-P3-A6T4-01 2 238727099 238727099 G A RBM44 Missense_Mutation p.E514K 0.13 deleterious(0.04) probably_damaging(0.928) TCGA-P3-A6T4-01 2 241631601 241631601 C A AQP12A Silent p.A78A 0.20 TCGA-P3-A6T4-01 2 27840415 27840415 C T ZNF512 Missense_Mutation p.H458Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-P3-A6T4-01 2 89442331 89442331 G A IGKV3-20 Missense_Mutation p.T25M 0.30 deleterious(0.01) possibly_damaging(0.548) TCGA-P3-A6T4-01 3 120320071 120320071 C A NDUFB4 Silent p.L98L 0.29 TCGA-P3-A6T4-01 3 123652563 123652563 C G CCDC14 Missense_Mutation p.Q468H 0.15 deleterious(0) benign(0.03) TCGA-P3-A6T4-01 3 136574081 136574081 T - SLC35G2 Frame_Shift_Del p.M260Rfs*3 0.26 TCGA-P3-A6T4-01 3 173998628 173998628 A C NLGN1 Missense_Mutation p.Q669H 0.06 tolerated(0.11) possibly_damaging(0.568) TCGA-P3-A6T4-01 3 191098615 191098615 A C CCDC50 Splice_Site p.X380_splice 0.12 TCGA-P3-A6T4-01 3 193132398 193132398 C G ATP13A4 Missense_Mutation p.R995T 0.15 tolerated(0.07) benign(0.103) TCGA-P3-A6T4-01 3 52858522 52858522 G C ITIH4 Silent p.L312L 0.15 TCGA-P3-A6T4-01 3 98109749 98109749 G A OR5K3 Silent p.K80K 0.12 TCGA-P3-A6T4-01 4 113107862 113107862 C G C4orf32 Nonsense_Mutation p.S56* 0.34 TCGA-P3-A6T4-01 4 16504566 16504566 G T LDB2 Intron 0.28 TCGA-P3-A6T4-01 4 175162265 175162265 G C FBXO8 Missense_Mutation p.I187M 0.14 tolerated(0.24) benign(0.428) TCGA-P3-A6T4-01 4 48081953 48081953 C T TXK Silent p.R383R 0.19 TCGA-P3-A6T4-01 4 57686742 57686742 G C SPINK2 Missense_Mutation p.S20C 0.16 tolerated(0.08) unknown(0) TCGA-P3-A6T4-01 4 70707744 70707744 C A SULT1E1 Nonsense_Mutation p.E285* 0.39 TCGA-P3-A6T4-01 4 88046198 88046198 G T AFF1 Nonsense_Mutation p.E826* 0.15 TCGA-P3-A6T4-01 5 1034966 1034966 C T NKD2 Silent p.T174T 0.24 TCGA-P3-A6T4-01 5 140023221 140023221 T C TMCO6 Silent p.A293A 0.45 TCGA-P3-A6T4-01 5 140718793 140718793 C T PCDHGA2 Silent p.V85V 0.16 TCGA-P3-A6T4-01 5 176056546 176056546 A G SNCB Missense_Mutation p.V37A 0.30 deleterious(0.04) possibly_damaging(0.546) TCGA-P3-A6T4-01 5 179529143 179529143 C T RASGEF1C Missense_Mutation p.G435D 0.28 tolerated(0.16) benign(0.015) TCGA-P3-A6T4-01 5 180338421 180338421 C T BTNL8 Silent p.F160F 0.31 TCGA-P3-A6T4-01 5 31323359 31323359 C T CDH6 Nonsense_Mutation p.R773* 0.33 TCGA-P3-A6T4-01 5 36181987 36181987 C G SKP2 Missense_Mutation p.Q377E 0.17 tolerated(0.45) benign(0.001) TCGA-P3-A6T4-01 6 130381184 130381184 C G L3MBTL3 Missense_Mutation p.Q255E 0.07 deleterious(0) probably_damaging(0.991) TCGA-P3-A6T4-01 6 132966607 132966607 C G TAAR1 Missense_Mutation p.R179T 0.05 tolerated(0.73) benign(0) TCGA-P3-A6T4-01 6 146350652 146350652 C G GRM1 5'UTR 0.26 TCGA-P3-A6T4-01 6 150710600 150710600 C G IYD Silent p.L97L 0.08 TCGA-P3-A6T4-01 6 159188386 159188386 C T EZR Silent p.A501A 0.21 TCGA-P3-A6T4-01 6 29394830 29394830 G A OR11A1 Nonsense_Mutation p.Q197* 0.19 TCGA-P3-A6T4-01 6 31593840 31593840 A T PRRC2A Missense_Mutation p.M295L 0.25 unknown(0) TCGA-P3-A6T4-01 6 37342431 37342431 G C RNF8 Missense_Mutation p.K358N 0.05 deleterious(0.01) possibly_damaging(0.735) TCGA-P3-A6T4-01 6 40399881 40399881 G C LRFN2 Silent p.A324A 0.07 TCGA-P3-A6T4-01 6 46830762 46830762 G A GPR116 Missense_Mutation p.R688W 0.23 deleterious(0.05) possibly_damaging(0.462) TCGA-P3-A6T4-01 6 99856100 99856100 C G PNISR Missense_Mutation p.E241Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T4-01 7 121623770 121623770 C G PTPRZ1 Nonsense_Mutation p.S224* 0.10 TCGA-P3-A6T4-01 7 139090444 139090444 G A LUC7L2 Missense_Mutation p.E207K 0.16 deleterious(0.01) probably_damaging(1) TCGA-P3-A6T4-01 7 1474275 1474275 G T MICALL2 Missense_Mutation p.S891Y 0.14 deleterious(0) probably_damaging(0.915) TCGA-P3-A6T4-01 7 30168931 30168931 G A PLEKHA8 3'UTR 0.08 TCGA-P3-A6T4-01 7 34009938 34009938 C T BMPER Intron 0.35 TCGA-P3-A6T4-01 7 43832348 43832348 G A BLVRA Missense_Mutation p.E97K 0.13 deleterious(0) probably_damaging(0.988) TCGA-P3-A6T4-01 7 56145842 56145842 C T SUMF2 Silent p.V232V 0.06 TCGA-P3-A6T4-01 7 92161777 92161777 A G RBM48 Missense_Mutation p.Y121C 0.35 deleterious(0) probably_damaging(0.971) TCGA-P3-A6T4-01 8 120430335 120430335 C G NOV Missense_Mutation p.I116M 0.09 deleterious(0.04) probably_damaging(0.988) TCGA-P3-A6T4-01 8 21842252 21842252 G C XPO7 Missense_Mutation p.C458S 0.20 tolerated(0.08) benign(0.258) TCGA-P3-A6T4-01 8 53071619 53071619 C G ST18 Missense_Mutation p.G549R 0.48 deleterious(0.04) possibly_damaging(0.483) TCGA-P3-A6T4-01 8 74941282 74941282 C G LY96 Nonsense_Mutation p.S159* 0.14 TCGA-P3-A6T4-01 8 95508575 95508575 T A KIAA1429 Missense_Mutation p.E1455V 0.58 tolerated(0.2) benign(0.116) TCGA-P3-A6T4-01 8 97270868 97270868 C G MTERFD1 Missense_Mutation p.L17F 0.15 tolerated_low_confidence(0.09) benign(0.004) TCGA-P3-A6T4-01 9 104171756 104171756 A C ZNF189 Missense_Mutation p.K569T 0.17 deleterious(0.03) benign(0.092) TCGA-P3-A6T4-01 9 119903610 119903610 G C ASTN2 Intron 0.20 TCGA-P3-A6T4-01 9 120475135 120475135 G T TLR4 Missense_Mutation p.M243I 0.57 deleterious(0) possibly_damaging(0.676) TCGA-P3-A6T4-01 9 14776092 14776092 C T FREM1 Missense_Mutation p.A1518T 0.36 tolerated(0.68) benign(0.004) TCGA-P3-A6T4-01 9 3275520 3275520 G C RFX3 Missense_Mutation p.L356V 0.23 tolerated(0.22) benign(0.082) TCGA-P3-A6T4-01 9 34093292 34093292 C T DCAF12 Missense_Mutation p.R339Q 0.12 tolerated(0.66) benign(0.005) TCGA-P3-A6T4-01 9 79323209 79323209 C T PRUNE2 Silent p.E1327E 0.43 TCGA-P3-A6T4-01 X 103495339 103495339 C T ESX1 Missense_Mutation p.R264K 0.75 tolerated(0.42) unknown(0) TCGA-P3-A6T4-01 X 105450867 105450867 G C MUM1L1 Missense_Mutation p.G481A 0.17 tolerated(0.5) probably_damaging(1) TCGA-P3-A6T4-01 X 117707860 117707860 C T DOCK11 Missense_Mutation p.S423F 0.71 tolerated(0.69) benign(0.26) TCGA-P3-A6T4-01 X 128927005 128927005 T G SASH3 Missense_Mutation p.L281R 0.63 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T4-01 X 129499634 129499634 T C SLC25A14 Missense_Mutation p.V280A 0.07 deleterious(0.05) benign(0.027) TCGA-P3-A6T4-01 X 136113301 136113301 C T GPR101 Missense_Mutation p.R178H 0.69 tolerated(0.15) benign(0.06) TCGA-P3-A6T4-01 X 151123412 151123412 G A GABRE Missense_Mutation p.P428S 0.68 tolerated(0.94) benign(0.001) TCGA-P3-A6T4-01 X 151123413 151123413 C G GABRE Missense_Mutation p.Q427H 0.68 tolerated(0.13) benign(0.108) TCGA-P3-A6T4-01 X 66765025 66765025 C G AR Missense_Mutation p.R13G 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-P3-A6T5-01 10 20506361 20506361 G C PLXDC2 Missense_Mutation p.E377Q 0.16 tolerated(0.22) benign(0.146) TCGA-P3-A6T5-01 10 30749638 30749638 C A MAP3K8 Missense_Mutation p.S426Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-P3-A6T5-01 10 32751975 32751975 G A CCDC7 Missense_Mutation p.E170K 0.14 deleterious(0.04) probably_damaging(0.994) TCGA-P3-A6T5-01 10 7816791 7816791 C A KIN Intron 0.14 TCGA-P3-A6T5-01 10 93389933 93389933 G T PPP1R3C Nonsense_Mutation p.C235* 0.18 TCGA-P3-A6T5-01 10 94834728 94834728 G A CYP26A1 Missense_Mutation p.D203N 0.15 tolerated(0.14) benign(0.044) TCGA-P3-A6T5-01 11 100909997 100909997 G A PGR Silent p.V884V 0.05 TCGA-P3-A6T5-01 11 101362340 101362340 C T TRPC6 Missense_Mutation p.G359S 0.10 tolerated(0.93) benign(0.029) TCGA-P3-A6T5-01 11 110450115 110450115 C G ARHGAP20 Missense_Mutation p.R1185S 0.04 tolerated_low_confidence(0.27) benign(0.024) TCGA-P3-A6T5-01 11 113711342 113711342 C T USP28 Missense_Mutation p.C171Y 0.19 deleterious(0.01) benign(0.247) TCGA-P3-A6T5-01 11 120322294 120322294 A G ARHGEF12 Silent p.E639E 0.11 TCGA-P3-A6T5-01 11 134129581 134129581 C T ACAD8 Missense_Mutation p.S216L 0.16 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T5-01 11 18487234 18487234 C T LDHAL6A Missense_Mutation p.R99C 0.14 tolerated(0.12) benign(0.042) TCGA-P3-A6T5-01 11 2339129 2339129 G A TSPAN32 Missense_Mutation p.C313Y 0.14 tolerated_low_confidence(0.09) benign(0.001) TCGA-P3-A6T5-01 11 2950497 2950497 G A PHLDA2 Missense_Mutation p.S33F 0.21 deleterious(0) possibly_damaging(0.627) TCGA-P3-A6T5-01 11 31484801 31484801 T C IMMP1L Missense_Mutation p.K8R 0.27 tolerated(0.2) possibly_damaging(0.725) TCGA-P3-A6T5-01 11 47330188 47330188 G C MADD Missense_Mutation p.G1269A 0.13 tolerated(0.08) benign(0.002) TCGA-P3-A6T5-01 11 56954774 56954774 C G LRRC55 Missense_Mutation p.F282L 0.10 tolerated(0.77) benign(0.022) TCGA-P3-A6T5-01 11 57309018 57309018 G A SMTNL1 Missense_Mutation p.E14K 0.11 tolerated_low_confidence(0.28) benign(0.003) TCGA-P3-A6T5-01 11 59481275 59481275 C T OR10V1 Missense_Mutation p.R15H 0.51 tolerated(0.63) benign(0.003) TCGA-P3-A6T5-01 11 62400972 62400972 T C GANAB Missense_Mutation p.D214G 0.06 tolerated(0.14) benign(0.062) TCGA-P3-A6T5-01 11 6867255 6867255 C T OR10A5 Silent p.F114F 0.11 TCGA-P3-A6T5-01 11 72410572 72410572 A G ARAP1 Silent p.L776L 0.22 TCGA-P3-A6T5-01 11 92543192 92543192 C G FAT3 Missense_Mutation p.T3144R 0.63 probably_damaging(0.995) TCGA-P3-A6T5-01 11 93065448 93065448 C T CCDC67 Missense_Mutation p.T8M 0.18 tolerated(0.1) benign(0.243) TCGA-P3-A6T5-01 12 10167981 10167981 G A CLEC12B Silent p.V180V 0.10 TCGA-P3-A6T5-01 12 120653789 120653789 G A PXN Intron 0.14 TCGA-P3-A6T5-01 12 14923664 14923664 G C HIST4H4 3'UTR 0.17 TCGA-P3-A6T5-01 12 40758833 40758833 C T LRRK2 Silent p.V2457V 0.19 TCGA-P3-A6T5-01 12 48387816 48387816 G C COL2A1 Missense_Mutation p.F277L 0.17 unknown(0) TCGA-P3-A6T5-01 12 54576029 54576029 G A SMUG1 Nonsense_Mutation p.R222* 0.37 TCGA-P3-A6T5-01 12 55356397 55356397 C T TESPA1 Missense_Mutation p.E429K 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.493) TCGA-P3-A6T5-01 12 55356450 55356450 C G TESPA1 Missense_Mutation p.R411T 0.17 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-P3-A6T5-01 12 56822387 56822387 C T TIMELESS Missense_Mutation p.E452K 0.12 tolerated(0.07) benign(0.006) TCGA-P3-A6T5-01 12 57432763 57432763 C T MYO1A Missense_Mutation p.E455K 0.23 deleterious(0) probably_damaging(0.997) TCGA-P3-A6T5-01 12 6103696 6103696 C T VWF Missense_Mutation p.M2047I 0.13 deleterious(0.03) benign(0.322) TCGA-P3-A6T5-01 12 72038709 72038709 T G ZFC3H1 Missense_Mutation p.Q409H 0.37 deleterious(0.02) possibly_damaging(0.823) TCGA-P3-A6T5-01 12 72425055 72425055 G A TPH2 Silent p.K394K 0.11 TCGA-P3-A6T5-01 13 101833404 101833404 C G NALCN Intron 0.07 TCGA-P3-A6T5-01 13 108863391 108863391 C T LIG4 Missense_Mutation p.E76K 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-P3-A6T5-01 13 115028376 115028376 T C CDC16 Missense_Mutation p.Y467H 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-P3-A6T5-01 13 21357969 21357969 G A XPO4 Silent p.L1116L 0.10 TCGA-P3-A6T5-01 13 23911462 23911462 T C SACS Missense_Mutation p.S2185G 0.10 probably_damaging(0.977) TCGA-P3-A6T5-01 13 45983155 45983155 T C SLC25A30 Missense_Mutation p.N40S 0.11 tolerated(0.41) benign(0.002) TCGA-P3-A6T5-01 13 46717512 46717512 G T LCP1 Missense_Mutation p.F427L 0.07 tolerated(0.66) benign(0.009) TCGA-P3-A6T5-01 13 80911079 80911079 T C SPRY2 Silent p.S254S 0.13 TCGA-P3-A6T5-01 14 101335439 101335439 G A MIR493 RNA 0.15 TCGA-P3-A6T5-01 14 102508995 102508995 G A DYNC1H1 Silent p.A4141A 0.09 TCGA-P3-A6T5-01 14 105238729 105238729 G A AKT1 Silent p.I411I 0.13 TCGA-P3-A6T5-01 14 105239675 105239675 G A AKT1 Silent p.I290I 0.09 TCGA-P3-A6T5-01 14 22038630 22038630 G A OR10G3 Silent p.L82L 0.12 TCGA-P3-A6T5-01 14 23548064 23548064 C T ACIN1 Missense_Mutation p.E716K 0.10 benign(0.058) TCGA-P3-A6T5-01 14 23868231 23868231 A G MYH6 Missense_Mutation p.S533P 0.10 deleterious(0) probably_damaging(0.943) TCGA-P3-A6T5-01 14 24707474 24707474 G A GMPR2 Missense_Mutation p.M258I 0.17 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 14 33292114 33292114 C G AKAP6 Missense_Mutation p.L1699V 0.12 tolerated(0.15) probably_damaging(0.996) TCGA-P3-A6T5-01 14 39530996 39530996 C T SEC23A Missense_Mutation p.R493H 0.15 tolerated(0.09) benign(0.321) TCGA-P3-A6T5-01 14 39871066 39871066 C T FBXO33 Splice_Site p.X237_splice 0.17 TCGA-P3-A6T5-01 14 52734980 52734980 G A PTGDR Missense_Mutation p.A150T 0.12 tolerated(0.11) possibly_damaging(0.756) TCGA-P3-A6T5-01 14 73181199 73181199 G A DPF3 Missense_Mutation p.S179F 0.06 tolerated(0.36) benign(0.163) TCGA-P3-A6T5-01 14 81209453 81209453 C A CEP128 Missense_Mutation p.E924D 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-P3-A6T5-01 15 22925804 22925804 G A CYFIP1 Missense_Mutation p.E8K 0.17 tolerated(0.31) benign(0.067) TCGA-P3-A6T5-01 15 31324973 31324973 G A TRPM1 Silent p.I974I 0.15 TCGA-P3-A6T5-01 15 48063756 48063756 G A SEMA6D Missense_Mutation p.G999E 0.11 tolerated(0.23) probably_damaging(0.993) TCGA-P3-A6T5-01 15 49907342 49907342 C A FAM227B Missense_Mutation p.R9S 0.15 tolerated_low_confidence(0.17) benign(0.01) TCGA-P3-A6T5-01 15 57753888 57753888 A C CGNL1 Missense_Mutation p.Q734P 0.18 deleterious(0) possibly_damaging(0.821) TCGA-P3-A6T5-01 15 58925411 58925411 T A ADAM10 Missense_Mutation p.H387L 0.59 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 15 78294029 78294029 C G TBC1D2B Missense_Mutation p.L876F 0.16 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 16 1260953 1260953 G A CACNA1H Missense_Mutation p.R1402Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-P3-A6T5-01 16 2569364 2569364 C G RP11-20I23.1 Missense_Mutation p.H371D 0.08 unknown(0) TCGA-P3-A6T5-01 16 2569686 2569686 C G ATP6V0C Missense_Mutation p.I136M 0.15 deleterious(0) probably_damaging(0.988) TCGA-P3-A6T5-01 16 30775583 30775583 G A RNF40 Missense_Mutation p.E176K 0.18 deleterious(0.01) possibly_damaging(0.902) TCGA-P3-A6T5-01 16 67986121 67986121 C A SLC12A4 Missense_Mutation p.G297C 0.14 deleterious(0.05) possibly_damaging(0.834) TCGA-P3-A6T5-01 16 69481170 69481170 G A CYB5B Missense_Mutation p.D98N 0.11 deleterious(0.02) benign(0.288) TCGA-P3-A6T5-01 16 83712013 83712013 G T CDH13 Silent p.V542V 0.14 TCGA-P3-A6T5-01 16 84472848 84472848 G A ATP2C2 Missense_Mutation p.A355T 0.16 deleterious(0.01) probably_damaging(0.976) TCGA-P3-A6T5-01 16 88722565 88722565 C T MVD Missense_Mutation p.R184Q 0.13 tolerated(0.67) benign(0) TCGA-P3-A6T5-01 17 20109066 20109066 C T SPECC1 Silent p.A568A 0.15 TCGA-P3-A6T5-01 17 25936334 25936334 C G KSR1 Nonsense_Mutation p.S620* 0.09 TCGA-P3-A6T5-01 17 33591649 33591649 T C SLFN5 Missense_Mutation p.L529P 0.58 deleterious(0) probably_damaging(0.997) TCGA-P3-A6T5-01 17 37566455 37566455 G A MED1 Silent p.S673S 0.15 TCGA-P3-A6T5-01 17 40094848 40094848 G A TTC25 RNA 0.05 TCGA-P3-A6T5-01 17 41131263 41131263 G A PTGES3L-AARSD1 Missense_Mutation p.S114F 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.567) TCGA-P3-A6T5-01 17 42288700 42288700 C G UBTF Splice_Site p.X350_splice 0.17 TCGA-P3-A6T5-01 17 42289000 42289000 C A UBTF Missense_Mutation p.D341Y 0.08 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 17 4607333 4607333 G A PELP1 Missense_Mutation p.S25L 0.13 unknown(0) TCGA-P3-A6T5-01 17 60663567 60663567 G A TLK2 Silent p.E480E 0.10 TCGA-P3-A6T5-01 17 6928498 6928498 G A BCL6B Missense_Mutation p.E290K 0.08 tolerated(0.74) benign(0.001) TCGA-P3-A6T5-01 17 70117580 70117580 G A SOX9 Silent p.K16K 0.07 TCGA-P3-A6T5-01 17 70117581 70117581 G A SOX9 Missense_Mutation p.G17S 0.07 tolerated(0.41) benign(0.006) TCGA-P3-A6T5-01 17 7157966 7157966 G - ELP5 Frame_Shift_Del p.P103Rfs*5 0.15 TCGA-P3-A6T5-01 17 72850832 72850832 C T GRIN2C Splice_Site p.X133_splice 0.08 TCGA-P3-A6T5-01 17 7578262 7578262 C G TP53 Missense_Mutation p.R196P 0.54 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 17 7657913 7657913 G A DNAH2 Intron 0.05 TCGA-P3-A6T5-01 17 79801866 79801866 C T P4HB 3'UTR 0.28 TCGA-P3-A6T5-01 17 80012647 80012647 C T GPS1 Silent p.S230S 0.12 TCGA-P3-A6T5-01 18 48575095 48575095 C T SMAD4 Missense_Mutation p.R97C 0.27 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 18 66541979 66541979 C G CCDC102B Missense_Mutation p.S337C 0.16 tolerated(0.16) benign(0.048) TCGA-P3-A6T5-01 19 10747142 10747142 C T SLC44A2 Silent p.F459F 0.16 TCGA-P3-A6T5-01 19 16799014 16799014 C G TMEM38A Missense_Mutation p.I244M 0.11 deleterious(0) benign(0.013) TCGA-P3-A6T5-01 19 17160658 17160658 C G HAUS8 3'UTR 0.14 TCGA-P3-A6T5-01 19 17951090 17951090 G A JAK3 Silent p.L401L 0.10 TCGA-P3-A6T5-01 19 18974385 18974385 C G UPF1 Missense_Mutation p.F913L 0.13 tolerated(0.61) benign(0.004) TCGA-P3-A6T5-01 19 19216416 19216416 T A SLC25A42 Missense_Mutation p.L87H 0.10 tolerated(0.11) possibly_damaging(0.759) TCGA-P3-A6T5-01 19 35657174 35657174 C T FXYD5 Missense_Mutation p.R145W 0.29 deleterious(0) probably_damaging(0.996) TCGA-P3-A6T5-01 19 36278688 36278688 G A ARHGAP33 Missense_Mutation p.G913D 0.10 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-P3-A6T5-01 19 37211354 37211354 C G ZNF567 Silent p.L545L 0.12 TCGA-P3-A6T5-01 19 40433288 40433288 C T FCGBP Silent p.V327V 0.11 TCGA-P3-A6T5-01 19 46181398 46181398 G A GIPR Missense_Mutation p.V356M 0.26 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 19 54544280 54544280 C G VSTM1 Missense_Mutation p.E216Q 0.13 deleterious(0.02) possibly_damaging(0.879) TCGA-P3-A6T5-01 19 55798463 55798463 G A BRSK1 Silent p.L75L 0.19 TCGA-P3-A6T5-01 19 55858809 55858809 G A SUV420H2 Missense_Mutation p.E461K 0.19 deleterious_low_confidence(0.03) benign(0.004) TCGA-P3-A6T5-01 1 10075981 10075981 G A RBP7 3'UTR 0.23 TCGA-P3-A6T5-01 1 115123922 115123922 C G BCAS2 Missense_Mutation p.E62Q 0.16 deleterious(0.03) possibly_damaging(0.562) TCGA-P3-A6T5-01 1 115219972 115219972 T C AMPD1 Missense_Mutation p.Y496C 0.21 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 1 116943570 116943570 G C ATP1A1 Missense_Mutation p.R887P 0.20 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T5-01 1 116943599 116943599 G A ATP1A1 Missense_Mutation p.D897N 0.14 tolerated(0.08) benign(0.012) TCGA-P3-A6T5-01 1 12418524 12418524 G A VPS13D Missense_Mutation p.M3336I 0.12 benign(0.205) TCGA-P3-A6T5-01 1 149858590 149858590 T A HIST2H2AC Silent p.A22A 0.21 TCGA-P3-A6T5-01 1 149859348 149859348 T C HIST2H2AB Missense_Mutation p.Y40C 0.10 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-P3-A6T5-01 1 151259741 151259741 C A ZNF687 Missense_Mutation p.S325Y 0.13 deleterious(0) possibly_damaging(0.701) TCGA-P3-A6T5-01 1 151260445 151260445 G A ZNF687 Missense_Mutation p.E560K 0.14 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 1 155699069 155699069 C A DAP3 Missense_Mutation p.S252Y 0.18 tolerated(0.32) benign(0.088) TCGA-P3-A6T5-01 1 156046533 156046533 G A MEX3A Silent p.G465G 0.18 TCGA-P3-A6T5-01 1 156126262 156126262 C T SEMA4A Missense_Mutation p.T66I 0.18 tolerated(0.33) benign(0.042) TCGA-P3-A6T5-01 1 158637691 158637691 A T SPTA1 Silent p.V665V 0.32 TCGA-P3-A6T5-01 1 160394931 160394931 G A VANGL2 Silent p.A443A 0.42 TCGA-P3-A6T5-01 1 169762501 169762501 C T METTL18 Missense_Mutation p.M112I 0.08 tolerated(0.13) benign(0) TCGA-P3-A6T5-01 1 174417406 174417406 C G GPR52 Missense_Mutation p.L53V 0.07 tolerated(0.12) possibly_damaging(0.883) TCGA-P3-A6T5-01 1 174417581 174417581 C G GPR52 Nonsense_Mutation p.S111* 0.06 TCGA-P3-A6T5-01 1 21268505 21268505 G T EIF4G3 Missense_Mutation p.P331H 0.07 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-P3-A6T5-01 1 214826293 214826293 A T CENPF Missense_Mutation p.K2761N 0.18 probably_damaging(0.996) TCGA-P3-A6T5-01 1 233482347 233482347 C G MLK4 Missense_Mutation p.S322C 0.09 deleterious(0) probably_damaging(0.997) TCGA-P3-A6T5-01 1 23645003 23645003 T C HNRNPR Silent p.E333E 0.58 TCGA-P3-A6T5-01 1 237796974 237796974 C T RYR2 Missense_Mutation p.L2218F 0.05 probably_damaging(1) TCGA-P3-A6T5-01 1 2411641 2411641 G C PLCH2 Missense_Mutation p.D152H 0.23 deleterious(0.01) benign(0.281) TCGA-P3-A6T5-01 1 24119250 24119250 G A LYPLA2 Silent p.A26A 0.10 TCGA-P3-A6T5-01 1 24645998 24645998 C A GRHL3 5'UTR 0.06 TCGA-P3-A6T5-01 1 248801888 248801888 A G OR2T35 Silent p.T224T 0.42 TCGA-P3-A6T5-01 1 27269257 27269257 C T NUDC Missense_Mutation p.S179L 0.05 deleterious(0.04) possibly_damaging(0.552) TCGA-P3-A6T5-01 1 33837995 33837995 C T PHC2 Silent p.Q76Q 0.19 TCGA-P3-A6T5-01 1 3547489 3547489 C T WRAP73 3'UTR 0.10 TCGA-P3-A6T5-01 1 36054038 36054038 C T TFAP2E Missense_Mutation p.R224W 0.05 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 1 47550580 47550580 C T CYP4Z1 Silent p.D234D 0.07 TCGA-P3-A6T5-01 1 62739257 62739257 C T KANK4 Missense_Mutation p.E507K 0.14 tolerated(0.31) benign(0.299) TCGA-P3-A6T5-01 1 70488940 70488940 G A LRRC7 Silent p.Q521Q 0.10 TCGA-P3-A6T5-01 20 10023851 10023851 A T ANKEF1 Missense_Mutation p.N143I 0.41 deleterious(0) probably_damaging(0.941) TCGA-P3-A6T5-01 20 13850197 13850197 C G SEL1L2 Missense_Mutation p.E403Q 0.13 tolerated(0.07) probably_damaging(0.99) TCGA-P3-A6T5-01 20 19981589 19981589 C T RIN2 3'UTR 0.09 TCGA-P3-A6T5-01 20 43243305 43243305 G A PKIG Silent p.R36R 0.15 TCGA-P3-A6T5-01 20 43945591 43945591 C A RBPJL Missense_Mutation p.Q516K 0.23 deleterious_low_confidence(0.01) benign(0.242) TCGA-P3-A6T5-01 20 46305857 46305857 C T SULF2 Missense_Mutation p.M405I 0.17 tolerated(0.26) benign(0.001) TCGA-P3-A6T5-01 20 57767486 57767486 G A ZNF831 Missense_Mutation p.R471H 0.11 tolerated(0.18) benign(0.042) TCGA-P3-A6T5-01 20 62328788 62328788 G C TNFRSF6B Missense_Mutation p.G178R 0.26 deleterious(0) probably_damaging(0.996) TCGA-P3-A6T5-01 20 62422135 62422135 C T ZBTB46 5'UTR 0.21 TCGA-P3-A6T5-01 21 34668668 34668668 G T IL10RB 3'UTR 0.15 TCGA-P3-A6T5-01 22 22673314 22673314 C T IGLV5-52 Missense_Mutation p.S36L 0.10 deleterious(0) benign(0.051) TCGA-P3-A6T5-01 22 23055573 23055573 G A IGLV3-21 Missense_Mutation p.R79Q 0.24 tolerated(0.05) benign(0.24) TCGA-P3-A6T5-01 22 23974227 23974227 T A C22orf43 5'UTR 0.13 TCGA-P3-A6T5-01 22 26688618 26688618 C A SEZ6L Missense_Mutation p.P114H 0.15 deleterious_low_confidence(0.01) benign(0.401) TCGA-P3-A6T5-01 22 27024266 27024266 G A CRYBA4 Silent p.S105S 0.11 TCGA-P3-A6T5-01 22 31731763 31731763 C T PATZ1 Silent p.G474G 0.06 TCGA-P3-A6T5-01 22 44083443 44083443 G A EFCAB6 Silent p.T350T 0.24 TCGA-P3-A6T5-01 22 44893383 44893383 C T LDOC1L Silent p.P18P 0.11 TCGA-P3-A6T5-01 22 45732284 45732284 C G FAM118A Nonsense_Mutation p.S349* 0.07 TCGA-P3-A6T5-01 22 45765859 45765859 G A SMC1B Missense_Mutation p.R799W 0.04 tolerated(0.06) possibly_damaging(0.54) TCGA-P3-A6T5-01 2 109513507 109513507 G A EDAR Silent p.I401I 0.34 TCGA-P3-A6T5-01 2 113322052 113322052 C T POLR1B Silent p.I574I 0.15 TCGA-P3-A6T5-01 2 116525882 116525882 C T DPP10 Missense_Mutation p.P379S 0.14 deleterious(0) probably_damaging(0.978) TCGA-P3-A6T5-01 2 120020885 120020885 G A STEAP3 Missense_Mutation p.A490T 0.68 tolerated(0.57) benign(0.002) TCGA-P3-A6T5-01 2 131356270 131356270 G A CFC1 Silent p.S64S 0.04 TCGA-P3-A6T5-01 2 141202206 141202206 C G LRP1B Missense_Mutation p.G3367A 0.08 probably_damaging(0.939) TCGA-P3-A6T5-01 2 141643780 141643780 G A LRP1B Silent p.F1297F 0.10 TCGA-P3-A6T5-01 2 1437283 1437283 G A TPO Missense_Mutation p.G85R 0.12 tolerated(1) benign(0.002) TCGA-P3-A6T5-01 2 160245892 160245892 C G BAZ2B Missense_Mutation p.K1060N 0.14 probably_damaging(0.993) TCGA-P3-A6T5-01 2 1670076 1670076 T A PXDN Missense_Mutation p.N401Y 0.12 deleterious(0.01) possibly_damaging(0.806) TCGA-P3-A6T5-01 2 175337792 175337792 C T GPR155 Missense_Mutation p.G254E 0.12 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 2 178095546 178095546 G A NFE2L2 Silent p.P595P 0.06 TCGA-P3-A6T5-01 2 208986503 208986503 C T CRYGD Missense_Mutation p.R140Q 0.14 tolerated(0.09) benign(0.052) TCGA-P3-A6T5-01 2 220349284 220349284 G A SPEG Missense_Mutation p.E2367K 0.15 benign(0.033) TCGA-P3-A6T5-01 2 220505519 220505519 G A SLC4A3 Silent p.T1179T 0.13 TCGA-P3-A6T5-01 2 231159004 231159004 C T SP140 Missense_Mutation p.P663S 0.08 tolerated(0.07) possibly_damaging(0.677) TCGA-P3-A6T5-01 2 234457817 234457817 C G USP40 Missense_Mutation p.G311A 0.12 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 2 234878921 234878921 G A TRPM8 Missense_Mutation p.V736M 0.14 deleterious(0) probably_damaging(0.95) TCGA-P3-A6T5-01 2 24522815 24522815 C T ITSN2 Missense_Mutation p.R436Q 0.05 deleterious(0.03) unknown(0) TCGA-P3-A6T5-01 2 27715639 27715639 C A FNDC4 Missense_Mutation p.C188F 0.09 tolerated(0.07) benign(0.272) TCGA-P3-A6T5-01 2 32692772 32692772 G A BIRC6 Missense_Mutation p.D1846N 0.17 benign(0.011) TCGA-P3-A6T5-01 2 46986576 46986576 T G SOCS5 Missense_Mutation p.L303V 0.47 tolerated(0.16) probably_damaging(0.967) TCGA-P3-A6T5-01 2 62373555 62373555 T A AC018462.2 RNA 0.17 TCGA-P3-A6T5-01 3 108096134 108096134 A G HHLA2 3'UTR 0.11 TCGA-P3-A6T5-01 3 118948733 118948733 C T B4GALT4 Missense_Mutation p.V72I 0.06 tolerated(0.22) benign(0.021) TCGA-P3-A6T5-01 3 130699488 130699488 A G ATP2C1 Missense_Mutation p.M636V 0.52 deleterious(0.03) benign(0.049) TCGA-P3-A6T5-01 3 138739189 138739189 C T PRR23B Silent p.L105L 0.09 TCGA-P3-A6T5-01 3 169802120 169802120 T C GPR160 Silent p.Y120Y 0.09 TCGA-P3-A6T5-01 3 179051945 179051945 C G ZNF639 Missense_Mutation p.T398R 0.15 deleterious(0) probably_damaging(0.951) TCGA-P3-A6T5-01 3 180324050 180324050 C T TTC14 Silent p.I313I 0.05 TCGA-P3-A6T5-01 3 180669130 180669130 G A FXR1 Silent p.V225V 0.08 TCGA-P3-A6T5-01 3 183909041 183909041 G T ABCF3 Missense_Mutation p.V523L 0.08 deleterious(0.03) benign(0.04) TCGA-P3-A6T5-01 3 184043143 184043143 C T EIF4G1 Silent p.D988D 0.16 TCGA-P3-A6T5-01 3 193361784 193361784 C T OPA1 Missense_Mutation p.R482C 0.09 deleterious(0) probably_damaging(0.992) TCGA-P3-A6T5-01 4 160274813 160274813 G A RAPGEF2 Silent p.Q1261Q 0.38 TCGA-P3-A6T5-01 4 187177145 187177145 G C KLKB1 Splice_Site p.X497_splice 0.44 TCGA-P3-A6T5-01 5 101709048 101709048 T C SLCO6A1 3'UTR 0.28 TCGA-P3-A6T5-01 5 1216992 1216992 G A SLC6A19 Missense_Mutation p.A369T 0.33 tolerated(0.26) benign(0.015) TCGA-P3-A6T5-01 5 138657715 138657715 G A MATR3 Silent p.L577L 0.14 TCGA-P3-A6T5-01 5 139825539 139825539 C G ANKHD1 Missense_Mutation p.L376V 0.11 unknown(0) TCGA-P3-A6T5-01 5 140209710 140209710 G A PCDHA6 Silent p.A678A 0.17 TCGA-P3-A6T5-01 5 140222515 140222515 G A PCDHA8 Missense_Mutation p.A537T 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-P3-A6T5-01 5 140530760 140530760 G A PCDHB6 Missense_Mutation p.E308K 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-P3-A6T5-01 5 140744753 140744753 G C PCDHGA5 Missense_Mutation p.E286Q 0.16 tolerated_low_confidence(0.23) benign(0.024) TCGA-P3-A6T5-01 5 158522676 158522676 C T EBF1 Silent p.R121R 0.18 TCGA-P3-A6T5-01 5 15937233 15937233 C A FBXL7 Missense_Mutation p.R472S 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-P3-A6T5-01 5 33937219 33937219 C T RXFP3 Missense_Mutation p.A125V 0.10 deleterious(0.03) possibly_damaging(0.873) TCGA-P3-A6T5-01 5 35965663 35965663 T C UGT3A1 Missense_Mutation p.N223S 0.35 tolerated(0.35) benign(0.119) TCGA-P3-A6T5-01 5 36122429 36122431 GGC - LMBRD2 In_Frame_Del p.P358del 0.09 TCGA-P3-A6T5-01 5 38925400 38925400 C G OSMR Missense_Mutation p.F713L 0.39 tolerated(1) benign(0.002) TCGA-P3-A6T5-01 5 64931138 64931138 G A TRAPPC13 Silent p.L19L 0.17 TCGA-P3-A6T5-01 5 86708734 86708734 G A CCNH 5'UTR 0.21 TCGA-P3-A6T5-01 5 95768696 95768696 G A PCSK1 Silent p.C17C 0.20 TCGA-P3-A6T5-01 6 102516358 102516358 G C GRIK2 Missense_Mutation p.R900T 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-P3-A6T5-01 6 108497868 108497868 G A NR2E1 Missense_Mutation p.G141S 0.23 tolerated(0.8) benign(0) TCGA-P3-A6T5-01 6 111689164 111689164 C T REV3L Missense_Mutation p.D1943N 0.16 deleterious(0) possibly_damaging(0.848) TCGA-P3-A6T5-01 6 116422175 116422175 G C NT5DC1 Missense_Mutation p.E28Q 0.12 tolerated(0.05) benign(0.142) TCGA-P3-A6T5-01 6 12123724 12123724 C G HIVEP1 Missense_Mutation p.I1232M 0.09 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 6 131905067 131905067 T G ARG1 3'UTR 0.18 TCGA-P3-A6T5-01 6 170888047 170888048 - T PDCD2 Nonsense_Mutation p.Y258* 0.11 TCGA-P3-A6T5-01 6 26508294 26508294 A G BTN1A1 Missense_Mutation p.K296E 0.10 tolerated(0.08) possibly_damaging(0.543) TCGA-P3-A6T5-01 6 27833210 27833210 C T HIST1H2AL Silent p.F26F 0.13 TCGA-P3-A6T5-01 6 28541039 28541039 C T SCAND3 Missense_Mutation p.R876Q 0.16 deleterious(0.02) possibly_damaging(0.834) TCGA-P3-A6T5-01 6 30691431 30691431 G C TUBB Missense_Mutation p.E198Q 0.05 tolerated_low_confidence(0.1) benign(0.034) TCGA-P3-A6T5-01 6 32050096 32050096 C G RNA5SP206 5'Flank 0.09 TCGA-P3-A6T5-01 6 33385797 33385797 G A CUTA Intron 0.12 TCGA-P3-A6T5-01 6 37250011 37250011 C T TBC1D22B Missense_Mutation p.R158W 0.17 deleterious(0.02) possibly_damaging(0.772) TCGA-P3-A6T5-01 6 41739249 41739249 G A FRS3 Missense_Mutation p.P196L 0.13 tolerated(0.07) benign(0.327) TCGA-P3-A6T5-01 6 70428941 70428941 C T LMBRD1 Silent p.L223L 0.13 TCGA-P3-A6T5-01 6 74492437 74492437 G A CD109 Silent p.K688K 0.54 TCGA-P3-A6T5-01 6 87969626 87969626 A G ZNF292 Silent p.K2093K 0.61 TCGA-P3-A6T5-01 7 100175784 100175784 C T LRCH4 Missense_Mutation p.E316K 0.18 deleterious(0.01) benign(0.022) TCGA-P3-A6T5-01 7 100366335 100366335 C T ZAN Missense_Mutation p.S1715F 0.19 unknown(0) TCGA-P3-A6T5-01 7 106524653 106524653 A G PIK3CG Silent p.A938A 0.16 TCGA-P3-A6T5-01 7 110763396 110763396 C G LRRN3 Missense_Mutation p.L190V 0.14 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 7 128415508 128415508 G T OPN1SW Missense_Mutation p.L113M 0.26 tolerated(0.89) benign(0.063) TCGA-P3-A6T5-01 7 138437534 138437534 C A ATP6V0A4 Missense_Mutation p.A289S 0.31 tolerated(0.26) possibly_damaging(0.762) TCGA-P3-A6T5-01 7 142448589 142448589 C T TRBV29-1 Silent p.I61I 0.12 TCGA-P3-A6T5-01 7 142919262 142919262 A G TAS2R40 Missense_Mutation p.T31A 0.15 tolerated(0.23) benign(0.003) TCGA-P3-A6T5-01 7 18688178 18688178 A G HDAC9 Missense_Mutation p.R447G 0.15 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T5-01 7 25191214 25191214 C G C7orf31 Splice_Site p.X228_splice 0.10 TCGA-P3-A6T5-01 7 32909721 32909721 G A KBTBD2 Missense_Mutation p.R370C 0.09 deleterious(0) probably_damaging(0.997) TCGA-P3-A6T5-01 7 37382282 37382282 C T ELMO1 Missense_Mutation p.A5T 0.12 tolerated(0.23) benign(0.029) TCGA-P3-A6T5-01 7 55260487 55260487 C G EGFR Nonsense_Mutation p.S885* 0.10 TCGA-P3-A6T5-01 7 73474269 73474269 G T ELN Missense_Mutation p.G490C 0.14 unknown(0) TCGA-P3-A6T5-01 7 8257989 8257989 G A ICA1 Silent p.D175D 0.29 TCGA-P3-A6T5-01 7 86817523 86817523 T C DMTF1 Silent p.H439H 0.27 TCGA-P3-A6T5-01 7 88424155 88424155 T A C7orf62 Missense_Mutation p.Q34H 0.29 deleterious(0.02) possibly_damaging(0.843) TCGA-P3-A6T5-01 7 97851780 97851780 G A TECPR1 Silent p.I994I 0.36 TCGA-P3-A6T5-01 7 98256572 98256572 C T NPTX2 Silent p.D328D 0.12 TCGA-P3-A6T5-01 8 110530664 110530664 G A PKHD1L1 Silent p.K3986K 0.19 TCGA-P3-A6T5-01 8 121823612 121823612 C T SNTB1 Missense_Mutation p.D158N 0.25 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 8 122641022 122641023 - T HAS2 Frame_Shift_Ins p.W187Mfs*26 0.22 TCGA-P3-A6T5-01 8 124267234 124267234 G A ZHX1 Missense_Mutation p.S318F 0.10 deleterious(0) possibly_damaging(0.905) TCGA-P3-A6T5-01 8 145580332 145580332 G A FBXL6 Silent p.T307T 0.36 TCGA-P3-A6T5-01 8 19277939 19277939 C T CSGALNACT1 Silent p.K348K 0.24 TCGA-P3-A6T5-01 8 21965084 21965084 G A NUDT18 Silent p.A233A 0.43 TCGA-P3-A6T5-01 8 30704565 30704565 C G TEX15 Missense_Mutation p.E657Q 0.06 tolerated(0.05) benign(0.211) TCGA-P3-A6T5-01 9 113169072 113169072 G T SVEP1 Missense_Mutation p.N2936K 0.69 benign(0.005) TCGA-P3-A6T5-01 9 117143419 117143419 G A AKNA Silent p.H65H 0.09 TCGA-P3-A6T5-01 9 119738445 119738445 C G ASTN2 Missense_Mutation p.E516Q 0.27 tolerated_low_confidence(0.98) unknown(0) TCGA-P3-A6T5-01 9 119738468 119738468 C G ASTN2 Splice_Site p.X508_splice 0.24 TCGA-P3-A6T5-01 9 130479115 130479115 G A TTC16 Intron 0.33 TCGA-P3-A6T5-01 9 131339447 131339447 G A SPTAN1 Silent p.E275E 0.11 TCGA-P3-A6T5-01 9 139333155 139333155 C A INPP5E Silent p.P239P 0.19 TCGA-P3-A6T5-01 9 140082436 140082436 C T ANAPC2 Silent p.L79L 0.16 TCGA-P3-A6T5-01 9 20986313 20986313 C G FOCAD Silent p.V1585V 0.07 TCGA-P3-A6T5-01 9 21861974 21861974 G A MTAP Splice_Site p.X272_splice 0.13 TCGA-P3-A6T5-01 9 26910414 26910414 C T PLAA Missense_Mutation p.A527T 0.06 tolerated(0.66) benign(0.001) TCGA-P3-A6T5-01 9 33056956 33056956 T A SMU1 Nonsense_Mutation p.K292* 0.33 TCGA-P3-A6T5-01 9 33467109 33467109 C T NOL6 Intron 0.11 TCGA-P3-A6T5-01 9 69385900 69385900 G A ANKRD20A4 Missense_Mutation p.E113K 0.23 deleterious(0) possibly_damaging(0.607) TCGA-P3-A6T5-01 9 70177607 70177607 T A FOXD4L5 Missense_Mutation p.H126L 0.30 deleterious(0.02) probably_damaging(0.954) TCGA-P3-A6T5-01 9 80046346 80046346 G A GNA14 Missense_Mutation p.R162C 0.14 deleterious(0) possibly_damaging(0.892) TCGA-P3-A6T5-01 9 84562529 84562529 G C RP11-383M4.6 Intron 0.10 TCGA-P3-A6T5-01 9 92003563 92003563 C T SEMA4D Silent p.P365P 0.74 TCGA-P3-A6T5-01 X 105011449 105011449 G C IL1RAPL2 Missense_Mutation p.R619T 0.16 deleterious_low_confidence(0.03) benign(0.348) TCGA-P3-A6T5-01 X 106843678 106843678 C T FRMPD3 Silent p.L836L 0.12 TCGA-P3-A6T5-01 X 119670819 119670819 G T CUL4B Missense_Mutation p.P688Q 0.15 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 X 120009411 120009411 G A CT47B1 Silent p.S38S 0.16 TCGA-P3-A6T5-01 X 123019598 123019598 G C XIAP Missense_Mutation p.R29T 0.23 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 X 123516636 123516636 C G TENM1 Missense_Mutation p.G2442R 0.15 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 X 129148458 129148458 C A BCORL1 Silent p.A570A 0.21 TCGA-P3-A6T5-01 X 135047200 135047200 C T MMGT1 Missense_Mutation p.E127K 0.11 tolerated_low_confidence(0.09) unknown(0) TCGA-P3-A6T5-01 X 151131098 151131098 G A GABRE Silent p.I120I 0.12 TCGA-P3-A6T5-01 X 151303852 151303853 GT C MAGEA10 Frame_Shift_Del p.P81Qfs*9 0.11 TCGA-P3-A6T5-01 X 153555958 153555958 G T TKTL1 Missense_Mutation p.D475Y 0.13 deleterious(0) probably_damaging(1) TCGA-P3-A6T5-01 X 154290185 154290185 G T CMC4 Missense_Mutation p.S47Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-P3-A6T5-01 X 19416433 19416433 C - MAP3K15 Frame_Shift_Del p.G661Afs*12 0.13 TCGA-P3-A6T5-01 X 21581470 21581470 G C CNKSR2 Missense_Mutation p.S503T 0.14 tolerated(0.32) benign(0.005) TCGA-P3-A6T5-01 X 34149447 34149447 G T FAM47A Missense_Mutation p.P317T 0.16 deleterious(0.01) probably_damaging(0.954) TCGA-P3-A6T5-01 X 36103497 36103497 C A CHDC2 Missense_Mutation p.D161E 0.21 tolerated(0.07) benign(0.139) TCGA-P3-A6T5-01 X 44970699 44970699 G A KDM6A 3'UTR 0.16 TCGA-P3-A6T5-01 X 48565906 48565906 G A SUV39H1 Missense_Mutation p.R395Q 0.13 deleterious(0.02) benign(0.372) TCGA-P3-A6T5-01 X 53562351 53562351 T C HUWE1 Missense_Mutation p.M4215V 0.14 unknown(0) TCGA-P3-A6T5-01 X 601763 601763 G A SHOX Missense_Mutation p.D192N 0.04 deleterious(0.04) benign(0.079) TCGA-P3-A6T5-01 X 70823738 70823738 C T ACRC Missense_Mutation p.S204L 0.15 unknown(0) TCGA-P3-A6T5-01 X 83724155 83724155 G A HDX Silent p.H192H 0.16 TCGA-P3-A6T5-01 X 84525922 84525922 T A ZNF711 Silent p.A458A 0.16 TCGA-P3-A6T5-01 X 86887271 86887271 G A KLHL4 Missense_Mutation p.M462I 0.11 deleterious(0.03) possibly_damaging(0.729) TCGA-P3-A6T6-01 10 105765747 105765747 A T SLK Missense_Mutation p.Q853L 0.33 tolerated(0.3) benign(0.013) TCGA-P3-A6T6-01 10 15183456 15183456 C G NMT2 Missense_Mutation p.D71H 0.25 deleterious(0.03) benign(0.422) TCGA-P3-A6T6-01 10 28233203 28233203 T A ARMC4 Missense_Mutation p.K564M 0.38 deleterious(0) possibly_damaging(0.897) TCGA-P3-A6T6-01 10 45480359 45480359 G A RASSF4 Missense_Mutation p.E158K 0.35 tolerated(0.19) probably_damaging(0.997) TCGA-P3-A6T6-01 10 7214103 7214103 G A SFMBT2 Silent p.D723D 0.21 TCGA-P3-A6T6-01 10 90774046 90774046 C A FAS Missense_Mutation p.Q283K 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-P3-A6T6-01 11 107219718 107219718 A T CWF19L2 Nonsense_Mutation p.L716* 0.26 TCGA-P3-A6T6-01 11 124619698 124619698 C G VSIG2 Silent p.L164L 0.58 TCGA-P3-A6T6-01 11 59245335 59245335 A G OR4D10 Missense_Mutation p.T145A 0.35 tolerated(0.06) benign(0.004) TCGA-P3-A6T6-01 11 62520867 62520867 C G ZBTB3 Silent p.L140L 0.35 TCGA-P3-A6T6-01 11 64335076 64335076 C T SLC22A11 Missense_Mutation p.S355F 0.35 tolerated(0.11) benign(0.111) TCGA-P3-A6T6-01 11 64335155 64335155 C T SLC22A11 Silent p.F381F 0.36 TCGA-P3-A6T6-01 11 7071047 7071047 G A NLRP14 Missense_Mutation p.E757K 0.58 tolerated(0.43) benign(0.002) TCGA-P3-A6T6-01 11 77884694 77884694 C T KCTD21 3'UTR 0.35 TCGA-P3-A6T6-01 12 108942937 108942937 G A SART3 Silent p.L122L 0.29 TCGA-P3-A6T6-01 12 109182643 109182643 C G SSH1 Missense_Mutation p.L757F 0.34 tolerated_low_confidence(0.06) benign(0.068) TCGA-P3-A6T6-01 12 123022969 123022969 C T KNTC1 Missense_Mutation p.H112Y 0.50 tolerated(0.34) benign(0.001) TCGA-P3-A6T6-01 12 123794272 123794272 C A SBNO1 Missense_Mutation p.D1143Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T6-01 12 13243575 13243575 C A GSG1 Missense_Mutation p.V76L 0.28 tolerated(0.17) benign(0.024) TCGA-P3-A6T6-01 12 30822217 30822217 C G IPO8 Splice_Site p.X349_splice 0.46 TCGA-P3-A6T6-01 12 55688689 55688689 A T OR6C6 Missense_Mutation p.F110I 0.40 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-P3-A6T6-01 13 25745572 25745572 C T AMER2 Silent p.K62K 0.29 TCGA-P3-A6T6-01 13 32786429 32786429 G A FRY Missense_Mutation p.G1531E 0.44 deleterious(0.04) possibly_damaging(0.507) TCGA-P3-A6T6-01 13 33332780 33332780 C A PDS5B Missense_Mutation p.Q1100K 0.29 tolerated(0.72) benign(0.002) TCGA-P3-A6T6-01 13 42259355 42259355 C A VWA8 Missense_Mutation p.W1385C 0.27 deleterious(0.04) probably_damaging(0.91) TCGA-P3-A6T6-01 13 42830495 42830495 A C FHP1 RNA 0.32 TCGA-P3-A6T6-01 13 96293908 96293908 C A DZIP1 Missense_Mutation p.V80L 0.35 tolerated(0.08) possibly_damaging(0.534) TCGA-P3-A6T6-01 14 21502043 21502043 G C RNASE13 Nonsense_Mutation p.Y135* 0.34 TCGA-P3-A6T6-01 14 24648888 24648888 G A REC8 Silent p.V468V 0.30 TCGA-P3-A6T6-01 14 32560674 32560674 C G ARHGAP5 Missense_Mutation p.Q267E 0.11 tolerated(0.41) benign(0.217) TCGA-P3-A6T6-01 14 45475316 45475316 C G FAM179B Missense_Mutation p.P917R 0.31 deleterious(0) possibly_damaging(0.733) TCGA-P3-A6T6-01 14 63858695 63858695 C T PPP2R5E Missense_Mutation p.E300K 0.22 tolerated(0.06) benign(0.246) TCGA-P3-A6T6-01 14 88658688 88658688 T A KCNK10 Missense_Mutation p.I250F 0.12 deleterious(0.01) benign(0.238) TCGA-P3-A6T6-01 14 94578103 94578103 C T IFI27 Silent p.A25A 0.37 TCGA-P3-A6T6-01 15 41068427 41068427 G C DNAJC17 Missense_Mutation p.Q149E 0.25 tolerated(0.14) benign(0.06) TCGA-P3-A6T6-01 15 42298223 42298223 T G PLA2G4E Missense_Mutation p.K164Q 0.15 deleterious(0.03) benign(0.052) TCGA-P3-A6T6-01 15 45412980 45412980 C G DUOXA1 Missense_Mutation p.E122Q 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-P3-A6T6-01 15 51773320 51773320 C G DMXL2 Missense_Mutation p.G1995R 0.09 tolerated(0.11) probably_damaging(1) TCGA-P3-A6T6-01 15 72953659 72953659 G T GOLGA6B Nonsense_Mutation p.E207* 0.09 TCGA-P3-A6T6-01 15 79264256 79264256 C A RASGRF1 Missense_Mutation p.E1227D 0.22 deleterious(0.02) probably_damaging(0.976) TCGA-P3-A6T6-01 15 82336850 82336850 C G MEX3B Missense_Mutation p.A121P 0.59 deleterious(0.02) probably_damaging(0.953) TCGA-P3-A6T6-01 15 91029360 91029360 G A IQGAP1 Silent p.L1340L 0.22 TCGA-P3-A6T6-01 16 110267 110267 C T RHBDF1 Missense_Mutation p.E557K 0.41 tolerated(0.09) benign(0.201) TCGA-P3-A6T6-01 16 21136517 21136517 A C DNAH3 Silent p.V461V 0.31 TCGA-P3-A6T6-01 16 23364196 23364196 C G SCNN1B Missense_Mutation p.P129R 0.40 tolerated(0.37) benign(0.038) TCGA-P3-A6T6-01 16 24834300 24834300 G C TNRC6A Missense_Mutation p.E1827Q 0.42 deleterious(0) probably_damaging(0.915) TCGA-P3-A6T6-01 16 55728019 55728019 G T SLC6A2 Missense_Mutation p.C339F 0.39 deleterious(0.01) probably_damaging(1) TCGA-P3-A6T6-01 16 69362782 69362782 C G RP11-343C2.12 3'UTR 0.41 TCGA-P3-A6T6-01 16 69362868 69362868 C T RP11-343C2.12 3'UTR 0.38 TCGA-P3-A6T6-01 16 72057134 72057134 G A DHODH Missense_Mutation p.R297H 0.45 tolerated(0.11) benign(0.028) TCGA-P3-A6T6-01 16 75601963 75601963 A C GABARAPL2 Missense_Mutation p.Q40P 0.42 deleterious(0.04) benign(0.009) TCGA-P3-A6T6-01 16 84132848 84132848 C A MBTPS1 Silent p.L77L 0.36 TCGA-P3-A6T6-01 16 86601504 86601504 C T FOXC2 Missense_Mutation p.P188L 0.30 tolerated(0.06) benign(0.026) TCGA-P3-A6T6-01 17 26898250 26898250 G A PIGS Intron 0.39 TCGA-P3-A6T6-01 17 42882287 42882287 T A GJC1 Missense_Mutation p.Q300L 0.30 tolerated(0.22) benign(0.108) TCGA-P3-A6T6-01 17 44076946 44076946 C G STH Missense_Mutation p.Q101E 0.23 deleterious_low_confidence(0) benign(0.092) TCGA-P3-A6T6-01 17 71426711 71426711 T C SDK2 Missense_Mutation p.I508V 0.78 tolerated(0.06) benign(0.075) TCGA-P3-A6T6-01 18 40850345 40850345 C T SYT4 Silent p.R413R 0.39 TCGA-P3-A6T6-01 18 6978337 6978337 C T LAMA1 Silent p.T2016T 0.18 TCGA-P3-A6T6-01 19 14273620 14273620 G A LPHN1 Silent p.D336D 0.31 TCGA-P3-A6T6-01 19 19243552 19243552 C G TMEM161A Missense_Mutation p.G67A 0.35 deleterious(0.05) possibly_damaging(0.734) TCGA-P3-A6T6-01 19 21992531 21992531 C G ZNF43 Missense_Mutation p.R103T 0.15 tolerated(0.13) possibly_damaging(0.627) TCGA-P3-A6T6-01 19 33092942 33092942 T C ANKRD27 Missense_Mutation p.T916A 0.35 tolerated_low_confidence(0.1) benign(0.217) TCGA-P3-A6T6-01 19 36003524 36003524 C T DMKN Missense_Mutation p.G199R 0.38 tolerated(0.1) probably_damaging(0.999) TCGA-P3-A6T6-01 19 36336673 36336673 G T NPHS1 Missense_Mutation p.A552D 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-P3-A6T6-01 19 42874353 42874353 G A MEGF8 Missense_Mutation p.E2216K 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-P3-A6T6-01 19 44662400 44662400 G C ZNF234 3'UTR 0.27 TCGA-P3-A6T6-01 19 46807198 46807198 C T HIF3A Missense_Mutation p.R24C 0.20 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T6-01 19 49646098 49646098 G A PPFIA3 Missense_Mutation p.C861Y 0.31 deleterious(0) possibly_damaging(0.852) TCGA-P3-A6T6-01 1 103364278 103364278 G A COL11A1 Nonsense_Mutation p.Q1398* 0.40 TCGA-P3-A6T6-01 1 103431072 103431072 G A COL11A1 Missense_Mutation p.P963S 0.31 unknown(0) TCGA-P3-A6T6-01 1 110300656 110300656 C A EPS8L3 Missense_Mutation p.D249Y 0.35 deleterious(0) probably_damaging(1) TCGA-P3-A6T6-01 1 113653031 113653031 G T LRIG2 Missense_Mutation p.V549F 0.31 deleterious(0.02) benign(0.285) TCGA-P3-A6T6-01 1 114680442 114680442 C A SYT6 Missense_Mutation p.R164L 0.36 deleterious(0) benign(0.319) TCGA-P3-A6T6-01 1 154965259 154965259 G A FLAD1 Missense_Mutation p.R542Q 0.29 tolerated(0.47) benign(0.007) TCGA-P3-A6T6-01 1 155629687 155629687 A G YY1AP1 Missense_Mutation p.F810L 0.23 tolerated_low_confidence(0.12) benign(0.03) TCGA-P3-A6T6-01 1 156024584 156024584 G A LAMTOR2 5'UTR 0.46 TCGA-P3-A6T6-01 1 160846552 160846552 C G ITLN1 Missense_Mutation p.D282H 0.26 deleterious(0) probably_damaging(1) TCGA-P3-A6T6-01 1 160920399 160920399 G A ITLN2 Missense_Mutation p.R182C 0.25 tolerated(0.07) benign(0.022) TCGA-P3-A6T6-01 1 161654863 161654863 G A RPL31P11 RNA 0.40 TCGA-P3-A6T6-01 1 179523821 179523821 G C AXDND1 3'UTR 0.42 TCGA-P3-A6T6-01 1 180904393 180904393 G A KIAA1614 Missense_Mutation p.V450M 0.31 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T6-01 1 183513602 183513602 G T SMG7 Nonsense_Mutation p.G607* 0.65 TCGA-P3-A6T6-01 1 204210863 204210863 A C PLEKHA6 Missense_Mutation p.V751G 0.42 tolerated(0.36) benign(0.014) TCGA-P3-A6T6-01 1 211192213 211192213 A T KCNH1 Missense_Mutation p.V315E 0.11 tolerated(0.23) benign(0.274) TCGA-P3-A6T6-01 1 236898965 236898965 G C ACTN2 Missense_Mutation p.R243T 0.26 deleterious(0) possibly_damaging(0.497) TCGA-P3-A6T6-01 1 32131522 32131522 C A COL16A1 Missense_Mutation p.E1139D 0.33 unknown(0) TCGA-P3-A6T6-01 1 34035053 34035053 G A CSMD2 Silent p.S2686S 0.29 TCGA-P3-A6T6-01 1 36643562 36643562 C G MAP7D1 Missense_Mutation p.L490V 0.38 probably_damaging(0.97) TCGA-P3-A6T6-01 1 39500131 39500135 CACCT - NDUFS5 Frame_Shift_Del p.H98Wfs*? 0.23 TCGA-P3-A6T6-01 1 51049377 51049377 G A FAF1 Silent p.N326N 0.52 TCGA-P3-A6T6-01 1 67855743 67855743 C T IL12RB2 Nonsense_Mutation p.Q660* 0.31 TCGA-P3-A6T6-01 1 70728311 70728311 C A ANKRD13C 3'UTR 0.39 TCGA-P3-A6T6-01 20 43723420 43723420 G A KCNS1 3'UTR 0.32 TCGA-P3-A6T6-01 20 44567730 44567730 C G PCIF1 Missense_Mutation p.P31R 0.30 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T6-01 21 38084919 38084919 C G SIM2 Silent p.S115S 0.35 TCGA-P3-A6T6-01 21 45929191 45929191 C T TSPEAR Missense_Mutation p.D549N 0.36 tolerated(0.09) possibly_damaging(0.506) TCGA-P3-A6T6-01 21 47744136 47744136 G A PCNT 5'UTR 0.64 TCGA-P3-A6T6-01 22 20937129 20937129 C T MED15 Missense_Mutation p.S471F 0.39 deleterious(0) unknown(0) TCGA-P3-A6T6-01 22 29709456 29709456 C G RASL10A Missense_Mutation p.R149P 0.50 deleterious(0) probably_damaging(0.977) TCGA-P3-A6T6-01 2 200820455 200820455 G A C2orf47 5'UTR 0.30 TCGA-P3-A6T6-01 2 220115611 220115611 G T TUBA4A Silent p.A270A 0.20 TCGA-P3-A6T6-01 2 26203812 26203812 C T KIF3C Silent p.L325L 0.25 TCGA-P3-A6T6-01 2 29274948 29274948 C T FAM179A Nonsense_Mutation p.Q1017* 0.17 TCGA-P3-A6T6-01 2 37229640 37229640 T A HEATR5B Missense_Mutation p.K1709I 0.31 deleterious(0) probably_damaging(0.914) TCGA-P3-A6T6-01 2 44459467 44459467 C G PPM1B 3'Flank 0.29 TCGA-P3-A6T6-01 2 70315482 70315482 G A PCBP1 Missense_Mutation p.D203N 0.37 tolerated(0.58) benign(0.086) TCGA-P3-A6T6-01 2 79314704 79314704 G A REG1B Missense_Mutation p.S12F 0.28 deleterious(0.05) possibly_damaging(0.485) TCGA-P3-A6T6-01 3 136646895 136646895 G A NCK1 Missense_Mutation p.E18K 0.42 tolerated(0.16) possibly_damaging(0.472) TCGA-P3-A6T6-01 3 142840472 142840472 G A CHST2 Missense_Mutation p.V272M 0.30 deleterious(0) probably_damaging(0.995) TCGA-P3-A6T6-01 3 151545711 151545711 G C AADAC Silent p.V317V 0.30 TCGA-P3-A6T6-01 3 156763348 156763348 G C LEKR1 Missense_Mutation p.G630R 0.36 tolerated(0.13) probably_damaging(0.979) TCGA-P3-A6T6-01 3 167031787 167031787 A G ZBBX Silent p.S464S 0.29 TCGA-P3-A6T6-01 3 189349298 189349298 G T TP63 5'UTR 0.36 TCGA-P3-A6T6-01 3 194390737 194390737 C T LSG1 Splice_Site p.X76_splice 0.24 TCGA-P3-A6T6-01 3 197566209 197566209 A G LRCH3 Silent p.P423P 0.38 TCGA-P3-A6T6-01 3 37368468 37368468 A T GOLGA4 Silent p.S1719S 0.38 TCGA-P3-A6T6-01 3 38565632 38565632 G T EXOG Missense_Mutation p.V296L 0.33 tolerated(0.1) benign(0.028) TCGA-P3-A6T6-01 3 38938649 38938649 G C SCN11A Missense_Mutation p.S697C 0.43 deleterious(0) probably_damaging(1) TCGA-P3-A6T6-01 3 39167822 39167822 A G TTC21A Missense_Mutation p.K496R 0.07 tolerated(0.24) benign(0.018) TCGA-P3-A6T6-01 3 47163179 47163179 C G SETD2 Missense_Mutation p.E983Q 0.04 deleterious_low_confidence(0.01) benign(0.231) TCGA-P3-A6T6-01 3 53756362 53756362 C A CACNA1D Missense_Mutation p.N529K 0.29 deleterious(0) possibly_damaging(0.817) TCGA-P3-A6T6-01 4 68619925 68619925 G A GNRHR Silent p.F43F 0.30 TCGA-P3-A6T6-01 4 69520826 69520826 C G UGT2B15 Missense_Mutation p.Q360H 0.31 deleterious(0) probably_damaging(0.988) TCGA-P3-A6T6-01 4 86916451 86916451 G C ARHGAP24 Missense_Mutation p.Q548H 0.32 tolerated(0.34) benign(0.003) TCGA-P3-A6T6-01 5 138221913 138221913 G C CTNNA1 Missense_Mutation p.E359Q 0.51 tolerated(0.07) benign(0.052) TCGA-P3-A6T6-01 5 149677735 149677735 C T ARSI Missense_Mutation p.R251H 0.23 tolerated(0.25) benign(0.014) TCGA-P3-A6T6-01 5 176675230 176675230 G T NSD1 Nonsense_Mutation p.E1516* 0.62 TCGA-P3-A6T6-01 5 177310701 177310701 C G RP11-423H2.1 RNA 0.16 TCGA-P3-A6T6-01 6 143823693 143823693 C A FUCA2 Silent p.R254R 0.67 TCGA-P3-A6T6-01 6 21000492 21000492 A C CDKAL1 Missense_Mutation p.Y315S 0.27 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T6-01 6 21000493 21000493 C T CDKAL1 Silent p.Y315Y 0.28 TCGA-P3-A6T6-01 6 28474185 28474185 T A GPX6 Missense_Mutation p.E88V 0.29 deleterious(0) possibly_damaging(0.518) TCGA-P3-A6T6-01 6 31238976 31238976 G A HLA-C Nonsense_Mutation p.Q165* 0.22 TCGA-P3-A6T6-01 6 38562112 38562112 C T BTBD9 Intron 0.31 TCGA-P3-A6T6-01 6 42975720 42975720 C G PPP2R5D Silent p.L258L 0.32 TCGA-P3-A6T6-01 6 49819806 49819806 T A CRISP1 Missense_Mutation p.T35S 0.28 deleterious(0) possibly_damaging(0.591) TCGA-P3-A6T6-01 7 143885484 143885484 G A ARHGEF35 5'UTR 0.47 TCGA-P3-A6T6-01 7 149523244 149523244 C T SSPO RNA 0.48 TCGA-P3-A6T6-01 7 150325463 150325463 C T GIMAP6 Missense_Mutation p.V75M 0.44 deleterious(0) probably_damaging(1) TCGA-P3-A6T6-01 7 23306136 23306136 G C GPNMB Missense_Mutation p.G352A 0.20 tolerated(0.91) benign(0.001) TCGA-P3-A6T6-01 7 2954870 2954873 CCTT - CARD11 Splice_Site p.X946_splice 0.38 TCGA-P3-A6T6-01 7 40134580 40134581 - TATCTATACTGAT CDK13 3'UTR 0.23 TCGA-P3-A6T6-01 7 7635887 7635887 G C MIOS Splice_Site p.X733_splice 0.46 TCGA-P3-A6T6-01 8 133623563 133623563 C T LRRC6 Missense_Mutation p.V341M 0.59 deleterious(0) probably_damaging(0.975) TCGA-P3-A6T6-01 8 146278031 146278031 G T C8orf33 Silent p.A22A 0.69 TCGA-P3-A6T6-01 8 35402012 35402012 C A UNC5D Intron 0.38 TCGA-P3-A6T6-01 8 39564306 39564306 C T ADAM18 Intron 0.26 TCGA-P3-A6T6-01 8 59514673 59514673 G A NSMAF Missense_Mutation p.R388W 0.10 deleterious(0) probably_damaging(0.987) TCGA-P3-A6T6-01 8 67357628 67357628 C T ADHFE1 Missense_Mutation p.P177S 0.28 tolerated(0.06) benign(0.158) TCGA-P3-A6T6-01 8 86126067 86126067 T G E2F5 Missense_Mutation p.D337E 0.30 deleterious(0) probably_damaging(0.958) TCGA-P3-A6T6-01 8 90777641 90777641 T C RIPK2 Missense_Mutation p.Y134H 0.37 deleterious(0) probably_damaging(0.985) TCGA-P3-A6T6-01 8 97269221 97269221 A G MTERFD1 Silent p.H152H 0.42 TCGA-P3-A6T6-01 9 116356598 116356598 G A RGS3 Intron 0.27 TCGA-P3-A6T6-01 9 132862907 132862907 G A GPR107 Splice_Site p.X314_splice 0.37 TCGA-P3-A6T6-01 9 140990941 140990941 G C CACNA1B Missense_Mutation p.L1700F 0.25 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T6-01 9 93375708 93375708 G A DIRAS2 Silent p.S134S 0.41 TCGA-P3-A6T6-01 X 100265416 100265416 C T TRMT2B 3'UTR 0.33 TCGA-P3-A6T6-01 X 151123155 151123155 C T GABRE 3'UTR 0.45 TCGA-P3-A6T6-01 X 153670443 153670443 T A GDI1 Intron 0.90 TCGA-P3-A6T6-01 X 48781242 48781242 G A OTUD5 Missense_Mutation p.R456W 0.59 deleterious(0) possibly_damaging(0.642) TCGA-P3-A6T6-01 X 71694509 71694509 C T HDAC8 Intron 0.21 TCGA-P3-A6T7-01 10 101124216 101124216 G A CNNM1 Missense_Mutation p.E691K 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-P3-A6T7-01 10 127505098 127505098 C A UROS Intron 0.25 TCGA-P3-A6T7-01 10 16563017 16563017 G A C1QL3 Silent p.A16A 0.22 TCGA-P3-A6T7-01 10 22618531 22618531 C T BMI1 3'UTR 0.17 TCGA-P3-A6T7-01 10 61833595 61833595 T C ANK3 Silent p.R2348R 0.24 TCGA-P3-A6T7-01 10 71048429 71048429 G A HK1 5'Flank 0.19 TCGA-P3-A6T7-01 10 73406419 73406419 G A CDH23 Silent p.P498P 0.28 TCGA-P3-A6T7-01 10 75397615 75397615 C T MYOZ1 Missense_Mutation p.E47K 0.27 deleterious(0.01) probably_damaging(1) TCGA-P3-A6T7-01 11 117186253 117186253 T C BACE1 Missense_Mutation p.T87A 0.25 deleterious(0.04) benign(0.021) TCGA-P3-A6T7-01 11 1269173 1269173 G A MUC5B Missense_Mutation p.G3688E 0.25 unknown(0) TCGA-P3-A6T7-01 11 133714533 133714533 T A SPATA19 Silent p.T46T 0.30 TCGA-P3-A6T7-01 11 47185796 47185796 G A C11orf49 3'Flank 0.17 TCGA-P3-A6T7-01 11 49207259 49207259 C A FOLH1 Missense_Mutation p.G263V 0.29 deleterious(0.03) probably_damaging(1) TCGA-P3-A6T7-01 11 5363939 5363939 G A OR51B5 Silent p.L272L 0.21 TCGA-P3-A6T7-01 11 55761592 55761592 G T OR5F1 Missense_Mutation p.D170E 0.23 tolerated(0.08) benign(0.016) TCGA-P3-A6T7-01 11 55798196 55798196 T A OR5AS1 Missense_Mutation p.M101K 0.19 deleterious(0) possibly_damaging(0.448) TCGA-P3-A6T7-01 11 56237461 56237461 C G OR5M3 Missense_Mutation p.E171D 0.23 tolerated(0.52) possibly_damaging(0.493) TCGA-P3-A6T7-01 11 5968905 5968905 G T OR56A3 Missense_Mutation p.C110F 0.26 tolerated(0.12) benign(0.002) TCGA-P3-A6T7-01 11 65351857 65351857 A G EHBP1L1 Missense_Mutation p.Y1080C 0.38 deleterious(0) probably_damaging(0.95) TCGA-P3-A6T7-01 11 65385113 65385113 C T PCNXL3 Silent p.S171S 0.33 TCGA-P3-A6T7-01 11 66617203 66617203 G C PC Nonsense_Mutation p.S1009* 0.06 TCGA-P3-A6T7-01 11 7960925 7960925 A C OR10A3 Missense_Mutation p.I48S 0.20 deleterious(0) benign(0.005) TCGA-P3-A6T7-01 12 108634166 108634166 G T WSCD2 Missense_Mutation p.C397F 0.20 deleterious(0) benign(0.426) TCGA-P3-A6T7-01 12 124497326 124497326 C T ZNF664 Missense_Mutation p.S212L 0.24 deleterious(0) benign(0.32) TCGA-P3-A6T7-01 12 18699354 18699354 G A PIK3C2G Missense_Mutation p.S1152N 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-P3-A6T7-01 12 25264751 25264751 G C CASC1 Missense_Mutation p.I578M 0.31 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T7-01 13 114325920 114325920 C T GRK1 Missense_Mutation p.R312W 0.26 deleterious(0.02) possibly_damaging(0.893) TCGA-P3-A6T7-01 13 27669743 27669743 C T USP12 Missense_Mutation p.E190K 0.11 deleterious(0) probably_damaging(0.982) TCGA-P3-A6T7-01 13 36700120 36700120 G C DCLK1 Missense_Mutation p.S52C 0.32 deleterious(0.01) unknown(0) TCGA-P3-A6T7-01 14 106641758 106641758 A C IGHV1-18 Silent p.G52G 0.41 TCGA-P3-A6T7-01 14 21109086 21109086 A G OR6S1 Silent p.Y255Y 0.37 TCGA-P3-A6T7-01 14 21861798 21861799 - G CHD8 Frame_Shift_Ins p.L2053Sfs*14 0.13 TCGA-P3-A6T7-01 14 24704944 24704945 TC - GMPR2 Frame_Shift_Del p.F91Hfs*5 0.15 TCGA-P3-A6T7-01 14 24882283 24882283 A T NYNRIN Missense_Mutation p.K908M 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-P3-A6T7-01 14 31576780 31576780 G C HECTD1 Missense_Mutation p.S2204C 0.41 deleterious(0.02) possibly_damaging(0.819) TCGA-P3-A6T7-01 14 45644788 45644788 C G FANCM Missense_Mutation p.S944C 0.37 deleterious(0) probably_damaging(0.987) TCGA-P3-A6T7-01 14 58827630 58827630 T C ARID4A Silent p.D650D 0.48 TCGA-P3-A6T7-01 14 92563016 92563016 A G ATXN3 Splice_Site p.X63_splice 0.15 TCGA-P3-A6T7-01 15 21051280 21051280 C T POTEB2 Missense_Mutation p.E394K 0.22 tolerated(0.11) benign(0.046) TCGA-P3-A6T7-01 15 22861781 22861781 C A TUBGCP5 Missense_Mutation p.Q601K 0.50 tolerated(0.11) benign(0.063) TCGA-P3-A6T7-01 15 48414190 48414190 C G SLC24A5 Silent p.V86V 0.24 TCGA-P3-A6T7-01 15 99670214 99670214 G C SYNM Missense_Mutation p.R549T 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-P3-A6T7-01 16 11010264 11010264 G T CIITA Missense_Mutation p.V1004F 0.21 deleterious(0) probably_damaging(0.981) TCGA-P3-A6T7-01 16 15690477 15690477 A C KIAA0430 3'UTR 0.22 TCGA-P3-A6T7-01 16 21709177 21709177 C T OTOA Missense_Mutation p.T274M 0.15 tolerated(0.61) benign(0.001) TCGA-P3-A6T7-01 16 3072999 3072999 C A HCFC1R1 Missense_Mutation p.R94S 0.18 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-P3-A6T7-01 16 30794512 30794512 G A ZNF629 Silent p.C379C 0.32 TCGA-P3-A6T7-01 16 56501083 56501083 G A OGFOD1 Missense_Mutation p.E222K 0.18 deleterious(0) probably_damaging(0.994) TCGA-P3-A6T7-01 16 61687482 61687482 C G CDH8 3'UTR 0.17 TCGA-P3-A6T7-01 16 69350018 69350018 C T VPS4A Silent p.I43I 0.21 TCGA-P3-A6T7-01 16 70916787 70916787 C T HYDIN Missense_Mutation p.E3331K 0.25 benign(0.018) TCGA-P3-A6T7-01 16 83945885 83945885 C T MLYCD Silent p.I287I 0.23 TCGA-P3-A6T7-01 16 8719531 8719531 G A METTL22 Silent p.Q3Q 0.21 TCGA-P3-A6T7-01 17 33338829 33338829 G A RFFL 3'UTR 0.44 TCGA-P3-A6T7-01 17 46136577 46136577 C T NFE2L1 Silent p.I631I 0.32 TCGA-P3-A6T7-01 17 46136934 46136934 C T NFE2L1 Silent p.L750L 0.42 TCGA-P3-A6T7-01 17 53237245 53237245 T C STXBP4 Silent p.S545S 0.38 TCGA-P3-A6T7-01 17 59485538 59485538 G A TBX2 Missense_Mutation p.G604S 0.34 tolerated(1) benign(0.003) TCGA-P3-A6T7-01 17 62133067 62133067 C T ERN1 Missense_Mutation p.G547D 0.07 tolerated(0.22) benign(0.282) TCGA-P3-A6T7-01 17 67304439 67304440 - A ABCA5 Frame_Shift_Ins p.D181Rfs*21 0.15 TCGA-P3-A6T7-01 17 7220820 7220820 G A NEURL4 Silent p.A1426A 0.45 TCGA-P3-A6T7-01 17 7577568 7577568 C - TP53 Frame_Shift_Del p.C238Lfs*9 0.26 TCGA-P3-A6T7-01 17 76120670 76120670 C T TMC6 Missense_Mutation p.A276T 0.21 tolerated(0.2) benign(0.426) TCGA-P3-A6T7-01 17 79409647 79409647 C T RP11-1055B8.7 Silent p.H424H 0.19 TCGA-P3-A6T7-01 18 32887862 32887862 G A ZNF271 RNA 0.15 TCGA-P3-A6T7-01 18 47479679 47479680 TT C MYO5B Frame_Shift_Del p.N568Afs*13 0.31 TCGA-P3-A6T7-01 18 48591933 48591933 C A SMAD4 Missense_Mutation p.Q366K 0.38 tolerated(0.08) probably_damaging(0.957) TCGA-P3-A6T7-01 18 74154328 74154328 C T ZNF516 Missense_Mutation p.G228E 0.31 tolerated(1) possibly_damaging(0.634) TCGA-P3-A6T7-01 19 13446718 13446718 G A CACNA1A Silent p.N328N 0.19 TCGA-P3-A6T7-01 19 17086059 17086059 C T CPAMD8 Missense_Mutation p.E687K 0.32 tolerated(0.09) possibly_damaging(0.894) TCGA-P3-A6T7-01 19 37440671 37440671 G T ZNF568 Nonsense_Mutation p.E206* 0.26 TCGA-P3-A6T7-01 19 40723998 40723998 C T TTC9B Silent p.A97A 0.29 TCGA-P3-A6T7-01 19 44559294 44559294 T C ZNF223 5'UTR 0.29 TCGA-P3-A6T7-01 19 49217224 49217224 G C MAMSTR Missense_Mutation p.P268A 0.21 tolerated(0.3) possibly_damaging(0.539) TCGA-P3-A6T7-01 19 50882024 50882024 C T NR1H2 Missense_Mutation p.R240C 0.16 deleterious(0.01) possibly_damaging(0.828) TCGA-P3-A6T7-01 19 50967652 50967652 A G MYBPC2 Missense_Mutation p.K1093R 0.22 tolerated(0.71) possibly_damaging(0.558) TCGA-P3-A6T7-01 19 52538076 52538076 C T ZNF432 Missense_Mutation p.E286K 0.17 deleterious(0) probably_damaging(0.995) TCGA-P3-A6T7-01 19 55776657 55776657 C A HSPBP1 Nonsense_Mutation p.E332* 0.19 TCGA-P3-A6T7-01 19 56466706 56466706 G A NLRP8 Missense_Mutation p.V428I 0.18 tolerated(0.28) benign(0.073) TCGA-P3-A6T7-01 1 109795578 109795578 G T CELSR2 Missense_Mutation p.Q959H 0.06 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T7-01 1 11080535 11080535 G A TARDBP Missense_Mutation p.C198Y 0.21 deleterious(0) possibly_damaging(0.593) TCGA-P3-A6T7-01 1 156693028 156693028 C T ISG20L2 3'UTR 0.18 TCGA-P3-A6T7-01 1 160720095 160720095 T C SLAMF7 Silent p.G217G 0.23 TCGA-P3-A6T7-01 1 16359723 16359723 G C CLCNKA Missense_Mutation p.R663T 0.24 deleterious(0) possibly_damaging(0.775) TCGA-P3-A6T7-01 1 200969588 200969588 C T KIF21B Missense_Mutation p.E539K 0.23 deleterious(0.03) benign(0.034) TCGA-P3-A6T7-01 1 20971160 20971162 GAA - PINK1 In_Frame_Del 0.28 TCGA-P3-A6T7-01 1 213068340 213068340 C A FLVCR1 Missense_Mutation p.S513Y 0.19 deleterious(0) possibly_damaging(0.687) TCGA-P3-A6T7-01 1 248616203 248616203 C A OR2T2 Silent p.I35I 0.11 TCGA-P3-A6T7-01 1 38265656 38265656 G C MANEAL Missense_Mutation p.E385D 0.27 tolerated(0.07) benign(0.041) TCGA-P3-A6T7-01 1 43909353 43909353 G A SZT2 Missense_Mutation p.R2847H 0.24 deleterious(0.05) probably_damaging(0.958) TCGA-P3-A6T7-01 1 51906049 51906049 G A EPS15 Missense_Mutation p.T337I 0.20 tolerated(0.07) benign(0.193) TCGA-P3-A6T7-01 1 53569074 53569074 G A SLC1A7 Missense_Mutation p.P214L 0.25 tolerated(0.2) probably_damaging(0.979) TCGA-P3-A6T7-01 1 91180280 91180280 C T BARHL2 Missense_Mutation p.S220N 0.23 deleterious(0.01) unknown(0) TCGA-P3-A6T7-01 20 17479642 17479642 T C BFSP1 Missense_Mutation p.Y260C 0.25 tolerated(0.05) possibly_damaging(0.463) TCGA-P3-A6T7-01 20 25666272 25666272 T A ZNF337 Missense_Mutation p.I61F 0.19 tolerated(0.09) benign(0.227) TCGA-P3-A6T7-01 20 40141541 40141541 G C CHD6 Missense_Mutation p.L266V 0.25 tolerated(0.11) benign(0.137) TCGA-P3-A6T7-01 21 41033143 41033143 C T B3GALT5 Silent p.Y219Y 0.07 TCGA-P3-A6T7-01 22 21083735 21083735 T C PI4KA Silent p.E1516E 0.26 TCGA-P3-A6T7-01 22 36900703 36900703 C A FOXRED2 Missense_Mutation p.G213V 0.12 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T7-01 22 38643838 38643838 T C TMEM184B Missense_Mutation p.T44A 0.19 tolerated(0.95) benign(0.004) TCGA-P3-A6T7-01 22 40066188 40066188 G A CACNA1I Missense_Mutation p.R1447Q 0.25 deleterious(0.01) benign(0.238) TCGA-P3-A6T7-01 22 46859772 46859772 G A CELSR1 Missense_Mutation p.R1339W 0.16 deleterious(0) probably_damaging(0.991) TCGA-P3-A6T7-01 2 179479225 179479225 C T TTN Missense_Mutation p.R16339Q 0.25 TCGA-P3-A6T7-01 2 179594238 179594238 G A TTN Silent p.D6215D 0.46 TCGA-P3-A6T7-01 2 219324528 219324528 C G USP37 Silent p.L876L 0.39 TCGA-P3-A6T7-01 2 228886587 228886587 C T SPHKAP Silent p.L179L 0.55 TCGA-P3-A6T7-01 2 233410327 233410327 C G CHRNG Missense_Mutation p.I485M 0.56 deleterious(0.04) possibly_damaging(0.467) TCGA-P3-A6T7-01 2 233410351 233410351 C T CHRNG Silent p.L493L 0.61 TCGA-P3-A6T7-01 2 239147933 239147933 G T HES6 Intron 0.29 TCGA-P3-A6T7-01 2 68765185 68765185 C G APLF Missense_Mutation p.S329W 0.21 tolerated(0.18) possibly_damaging(0.756) TCGA-P3-A6T7-01 2 69172399 69172399 C G GKN2 3'UTR 0.19 TCGA-P3-A6T7-01 2 85097547 85097547 G A TRABD2A Silent p.A157A 0.17 TCGA-P3-A6T7-01 3 100566448 100566448 G A ABI3BP Missense_Mutation p.P507L 0.41 tolerated(0.59) benign(0) TCGA-P3-A6T7-01 3 11078724 11078724 G A SLC6A1 3'UTR 0.47 TCGA-P3-A6T7-01 3 113721347 113721347 G A KIAA1407 Missense_Mutation p.R673W 0.17 deleterious(0.02) benign(0.109) TCGA-P3-A6T7-01 3 120976119 120976119 T A STXBP5L Missense_Mutation p.S591T 0.14 tolerated(0.37) benign(0.335) TCGA-P3-A6T7-01 3 127292391 127292391 G A TPRA1 Silent p.S365S 0.19 TCGA-P3-A6T7-01 3 141457317 141457317 T A RNF7 Missense_Mutation p.V45E 0.09 deleterious(0) probably_damaging(0.931) TCGA-P3-A6T7-01 3 195953918 195953918 C T SLC51A Silent p.A72A 0.17 TCGA-P3-A6T7-01 3 196678695 196678695 C T PIGZ Missense_Mutation p.A70T 0.43 deleterious(0) probably_damaging(0.998) TCGA-P3-A6T7-01 3 44844448 44844448 T G KIF15 Missense_Mutation p.F551C 0.42 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T7-01 3 57743311 57743311 A G SLMAP 5'UTR 0.25 TCGA-P3-A6T7-01 3 89391076 89391076 G A EPHA3 Missense_Mutation p.R381H 0.39 tolerated(0.22) benign(0.002) TCGA-P3-A6T7-01 3 89457269 89457269 G T EPHA3 Missense_Mutation p.G584C 0.16 tolerated(0.17) probably_damaging(1) TCGA-P3-A6T7-01 4 108985490 108985500 ACCTGATGCAG - LEF1 Splice_Site p.X386_splice 0.09 TCGA-P3-A6T7-01 4 119659453 119659465 TAACATGCCAACA - SEC24D Frame_Shift_Del p.M816Tfs*20 0.23 TCGA-P3-A6T7-01 4 13338406 13338406 A G HSP90AB2P RNA 0.24 TCGA-P3-A6T7-01 4 153271277 153271277 C G FBXW7 Splice_Site p.X168_splice 0.27 TCGA-P3-A6T7-01 4 153897628 153897628 G A FHDC1 Missense_Mutation p.R1062Q 0.11 deleterious(0.01) probably_damaging(0.967) TCGA-P3-A6T7-01 4 159894346 159894346 G C C4orf45 Nonsense_Mutation p.S61* 0.37 TCGA-P3-A6T7-01 4 90170208 90170208 G C GPRIN3 Missense_Mutation p.H352D 0.18 tolerated(0.63) benign(0.1) TCGA-P3-A6T7-01 4 981686 981686 G A IDUA Missense_Mutation p.R83H 0.30 tolerated(0.1) benign(0.007) TCGA-P3-A6T7-01 5 140222296 140222296 G A PCDHA8 Missense_Mutation p.V464M 0.24 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-P3-A6T7-01 5 140480964 140480964 A G PCDHB3 Missense_Mutation p.Q244R 0.25 tolerated_low_confidence(0.08) benign(0.006) TCGA-P3-A6T7-01 5 140590690 140590690 G A PCDHB12 Silent p.V737V 0.20 TCGA-P3-A6T7-01 5 161309610 161309610 A G GABRA1 Silent p.P202P 0.26 TCGA-P3-A6T7-01 5 161524737 161524737 A G GABRG2 Missense_Mutation p.M141V 0.28 tolerated(0.13) probably_damaging(0.968) TCGA-P3-A6T7-01 5 176942237 176942237 C G DDX41 Missense_Mutation p.K198N 0.23 tolerated(0.18) probably_damaging(0.922) TCGA-P3-A6T7-01 5 74026194 74026195 - T GFM2 Frame_Shift_Ins p.H539Qfs*7 0.15 TCGA-P3-A6T7-01 5 881268 881268 C G BRD9 Silent p.G332G 0.12 TCGA-P3-A6T7-01 6 127608113 127608116 GAGC - RNF146 Frame_Shift_Del p.E119Afs*20 0.19 TCGA-P3-A6T7-01 6 139495587 139495587 A T HECA Missense_Mutation p.I460F 0.21 tolerated(0.06) probably_damaging(0.918) TCGA-P3-A6T7-01 6 143793343 143793343 C G PEX3 Missense_Mutation p.L209V 0.22 tolerated(0.31) benign(0.026) TCGA-P3-A6T7-01 6 144086485 144086485 C G PHACTR2 Nonsense_Mutation p.S261* 0.23 TCGA-P3-A6T7-01 6 152757123 152757123 C G SYNE1 Missense_Mutation p.K1421N 0.20 benign(0.003) TCGA-P3-A6T7-01 6 160176183 160176183 C G WTAP Missense_Mutation p.S244C 0.29 tolerated(0.08) benign(0.421) TCGA-P3-A6T7-01 6 161127524 161127524 T A PLG Missense_Mutation p.S45R 0.27 deleterious(0.02) benign(0.114) TCGA-P3-A6T7-01 6 31525422 31525422 C T NFKBIL1 Missense_Mutation p.L118F 0.23 deleterious(0.01) probably_damaging(0.939) TCGA-P3-A6T7-01 6 31736896 31736897 - T VWA7 Frame_Shift_Ins p.Y468Ifs*107 0.17 TCGA-P3-A6T7-01 6 33175619 33175619 G A SLC39A7 3'Flank 0.20 TCGA-P3-A6T7-01 6 39161971 39161971 G T KCNK5 Missense_Mutation p.T203N 0.19 deleterious(0) probably_damaging(0.995) TCGA-P3-A6T7-01 6 41621152 41621152 T A MDFI Missense_Mutation p.S194T 0.18 deleterious(0.01) benign(0.359) TCGA-P3-A6T7-01 6 43152524 43152524 C G CUL9 Missense_Mutation p.T159S 0.28 deleterious(0.03) benign(0.183) TCGA-P3-A6T7-01 6 43230606 43230606 G A TTBK1 Missense_Mutation p.G502S 0.27 possibly_damaging(0.858) TCGA-P3-A6T7-01 6 46658913 46658913 A G TDRD6 Silent p.S1016S 0.22 TCGA-P3-A6T7-01 6 56437563 56437563 T C DST Silent p.E1889E 0.38 TCGA-P3-A6T7-01 6 64421225 64421225 A G PHF3 Missense_Mutation p.I1322V 0.24 tolerated(0.52) benign(0.085) TCGA-P3-A6T7-01 6 93969087 93969087 G A EPHA7 Missense_Mutation p.R637C 0.22 deleterious(0) probably_damaging(0.978) TCGA-P3-A6T7-01 7 1131854 1131854 C T GPER1 Missense_Mutation p.R164C 0.16 deleterious(0.02) probably_damaging(0.93) TCGA-P3-A6T7-01 7 150417607 150417607 G A GIMAP1 Missense_Mutation p.R172Q 0.27 tolerated(0.25) benign(0.234) TCGA-P3-A6T7-01 7 26224372 26224372 C A NFE2L3 Missense_Mutation p.P352T 0.21 tolerated(0.3) benign(0.051) TCGA-P3-A6T7-01 7 86468506 86468506 T G GRM3 Missense_Mutation p.L559R 0.25 tolerated(0.87) probably_damaging(0.999) TCGA-P3-A6T7-01 7 94184852 94184852 A G CASD1 Missense_Mutation p.I726V 0.25 tolerated(0.67) benign(0.064) TCGA-P3-A6T7-01 7 96637143 96637143 G A DLX6 Silent p.Q210Q 0.21 TCGA-P3-A6T7-01 8 100182343 100182343 C G VPS13B Missense_Mutation p.S762C 0.34 deleterious(0.03) possibly_damaging(0.648) TCGA-P3-A6T7-01 8 110516713 110516713 T C PKHD1L1 Silent p.P3662P 0.30 TCGA-P3-A6T7-01 8 134488326 134488326 G A ST3GAL1 5'UTR 0.30 TCGA-P3-A6T7-01 8 145542404 145542404 G C DGAT1 Silent p.V142V 0.15 TCGA-P3-A6T7-01 8 24324554 24324554 G C ADAM7 Intron 0.34 TCGA-P3-A6T7-01 8 57892606 57892625 GTGTAGCATCAAGTGGGTCA - IMPAD1 Frame_Shift_Del p.D174Gfs*21 0.21 TCGA-P3-A6T7-01 8 97243451 97243451 T C UQCRB Intron 0.14 TCGA-P3-A6T7-01 9 104314951 104314951 C G RNF20 Missense_Mutation p.S606C 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-P3-A6T7-01 9 127915979 127915979 G C PPP6C Missense_Mutation p.P205A 0.27 deleterious(0) probably_damaging(0.997) TCGA-P3-A6T7-01 9 131394416 131394416 A T SPTAN1 Missense_Mutation p.Q2258L 0.20 tolerated(0.09) benign(0.122) TCGA-P3-A6T7-01 9 141016472 141016472 C T CACNA1B 3'UTR 0.20 TCGA-P3-A6T7-01 9 27455563 27455563 C T MOB3B 5'UTR 0.17 TCGA-P3-A6T7-01 9 4679758 4679758 G A CDC37L1 5'UTR 0.39 TCGA-P3-A6T7-01 9 5765455 5765455 T A KIAA1432 Silent p.L961L 0.14 TCGA-P3-A6T7-01 9 86571389 86571389 T A C9orf64 Missense_Mutation p.E9D 0.22 tolerated(0.14) benign(0.036) TCGA-P3-A6T7-01 X 101805037 101805037 G C NXF4 RNA 0.50 TCGA-P3-A6T7-01 X 135106525 135106525 G A SLC9A6 Missense_Mutation p.R500Q 0.53 deleterious(0.04) possibly_damaging(0.888) TCGA-P3-A6T7-01 X 140994457 140994457 A C MAGEC1 Missense_Mutation p.I423L 0.27 tolerated_low_confidence(1) benign(0.031) TCGA-P3-A6T7-01 X 140994650 140994650 C T MAGEC1 Missense_Mutation p.S487F 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.485) TCGA-P3-A6T7-01 X 140994657 140994657 C T MAGEC1 Silent p.S489S 0.25 TCGA-P3-A6T7-01 X 148582533 148582533 T A IDS Missense_Mutation p.S152C 0.41 deleterious(0) probably_damaging(1) TCGA-P3-A6T8-01 10 1405854 1405854 C T ADARB2 Missense_Mutation p.G149D 0.28 deleterious(0) probably_damaging(1) TCGA-P3-A6T8-01 10 38407507 38407507 C T ZNF37A Silent p.F476F 0.19 TCGA-P3-A6T8-01 10 73826746 73826756 CAGACCTCGTA - SPOCK2 Frame_Shift_Del p.Y278Hfs*9 0.20 TCGA-P3-A6T8-01 11 104874022 104874024 CAG - CASP5 In_Frame_Del p.L187del 0.33 TCGA-P3-A6T8-01 11 124007351 124007351 C T VWA5A Missense_Mutation p.T532I 0.22 tolerated(0.3) benign(0.284) TCGA-P3-A6T8-01 11 124747166 124747166 C T ROBO3 Missense_Mutation p.S936F 0.09 deleterious(0) probably_damaging(0.935) TCGA-P3-A6T8-01 11 124747167 124747167 C T ROBO3 Silent p.S936S 0.09 TCGA-P3-A6T8-01 11 57995838 57995838 C A OR10Q1 Silent p.L170L 0.29 TCGA-P3-A6T8-01 11 59282758 59282758 G A OR4D9 Missense_Mutation p.A125T 0.12 deleterious(0.01) probably_damaging(0.969) TCGA-P3-A6T8-01 11 59376073 59376073 G A OSBP Nonsense_Mutation p.Q236* 0.10 TCGA-P3-A6T8-01 11 62288732 62288732 G A AHNAK Missense_Mutation p.S4386F 0.15 probably_damaging(0.945) TCGA-P3-A6T8-01 11 840331 840331 G A POLR2L 3'UTR 0.12 TCGA-P3-A6T8-01 12 102078185 102078185 T C MYBPC1 Intron 0.13 TCGA-P3-A6T8-01 12 130833938 130833938 G C PIWIL1 Missense_Mutation p.E297Q 0.09 tolerated(0.5) probably_damaging(0.909) TCGA-P3-A6T8-01 12 20874888 20874888 A T SLCO1C1 Missense_Mutation p.N309I 0.22 tolerated(0.18) benign(0.004) TCGA-P3-A6T8-01 12 22610002 22610002 T C C2CD5 Missense_Mutation p.K876R 0.20 tolerated(0.09) possibly_damaging(0.579) TCGA-P3-A6T8-01 12 42503387 42503387 G A GXYLT1 Missense_Mutation p.S198L 0.17 deleterious(0.05) possibly_damaging(0.537) TCGA-P3-A6T8-01 12 49579180 49579180 C A TUBA1A Silent p.V323V 0.17 TCGA-P3-A6T8-01 12 63954379 63954379 G C DPY19L2 Silent p.P730P 0.13 TCGA-P3-A6T8-01 12 71978308 71978308 G A LGR5 Missense_Mutation p.V840I 0.22 tolerated(0.4) benign(0) TCGA-P3-A6T8-01 12 7647854 7647854 C T CD163 Missense_Mutation p.G415R 0.22 deleterious(0.02) benign(0.443) TCGA-P3-A6T8-01 12 78511895 78511895 G A NAV3 Missense_Mutation p.S953N 0.14 deleterious(0.01) benign(0.139) TCGA-P3-A6T8-01 12 78511896 78511896 C A NAV3 Missense_Mutation p.S953R 0.14 deleterious(0.02) benign(0.419) TCGA-P3-A6T8-01 12 88582625 88582625 A G TMTC3 Missense_Mutation p.I480V 0.18 tolerated(0.24) benign(0.051) TCGA-P3-A6T8-01 13 37427662 37427662 A - SMAD9 Frame_Shift_Del p.F385Sfs*24 0.15 TCGA-P3-A6T8-01 13 76382245 76382245 C G LMO7 Missense_Mutation p.P376R 0.29 deleterious(0) probably_damaging(1) TCGA-P3-A6T8-01 14 55817321 55817321 C T FBXO34 Silent p.C71C 0.21 TCGA-P3-A6T8-01 14 70418879 70418879 C T SMOC1 Nonsense_Mutation p.Q42* 0.22 TCGA-P3-A6T8-01 14 90769458 90769459 - A NRDE2 Frame_Shift_Ins p.M339Ifs*37 0.16 TCGA-P3-A6T8-01 16 89805121 89805122 GA - FANCA Intron 0.22 TCGA-P3-A6T8-01 16 89880932 89880932 A T FANCA Missense_Mutation p.F93L 0.16 tolerated(0.38) benign(0.153) TCGA-P3-A6T8-01 17 63052779 63052779 C T GNA13 5'UTR 0.07 TCGA-P3-A6T8-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.28 deleterious(0) probably_damaging(1) TCGA-P3-A6T8-01 18 65180503 65180503 A T DSEL Missense_Mutation p.I458K 0.35 deleterious(0) probably_damaging(0.943) TCGA-P3-A6T8-01 19 17671238 17671238 G T COLGALT1 Silent p.L151L 0.23 TCGA-P3-A6T8-01 19 24310424 24310424 C T ZNF254 Missense_Mutation p.T541I 0.19 deleterious(0.02) benign(0.143) TCGA-P3-A6T8-01 19 31039416 31039416 T A ZNF536 Missense_Mutation p.S964T 0.18 tolerated_low_confidence(0.22) benign(0.021) TCGA-P3-A6T8-01 19 35251188 35251188 G A ZNF599 Missense_Mutation p.T173I 0.22 tolerated(0.35) benign(0.004) TCGA-P3-A6T8-01 19 44662400 44662400 G C ZNF234 3'UTR 0.16 TCGA-P3-A6T8-01 19 52659617 52659617 T A ZNF836 Missense_Mutation p.K440I 0.27 deleterious(0) probably_damaging(0.995) TCGA-P3-A6T8-01 19 56466164 56466164 A G NLRP8 Missense_Mutation p.E247G 0.18 deleterious(0) probably_damaging(0.947) TCGA-P3-A6T8-01 19 6380286 6380286 C A GTF2F1 3'UTR 0.10 TCGA-P3-A6T8-01 19 6380287 6380287 A G GTF2F1 3'UTR 0.11 TCGA-P3-A6T8-01 1 152277201 152277201 G C FLG Silent p.L3387L 0.19 TCGA-P3-A6T8-01 1 15812463 15812463 C A CELA2B Silent p.S187S 0.44 TCGA-P3-A6T8-01 1 179363159 179363159 G T AXDND1 Missense_Mutation p.V329F 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-P3-A6T8-01 1 197128614 197128614 T C ZBTB41 Missense_Mutation p.I869V 0.12 deleterious_low_confidence(0.02) benign(0.13) TCGA-P3-A6T8-01 1 203740566 203740566 A C LAX1 Missense_Mutation p.N91H 0.16 deleterious(0) probably_damaging(0.994) TCGA-P3-A6T8-01 1 207870959 207870959 G A CR1L Missense_Mutation p.R325K 0.17 tolerated(0.7) possibly_damaging(0.585) TCGA-P3-A6T8-01 1 223567513 223567513 C G C1orf65 Missense_Mutation p.S232R 0.07 tolerated(0.13) benign(0.234) TCGA-P3-A6T8-01 1 248436936 248436936 G A OR2T33 Silent p.L61L 0.10 TCGA-P3-A6T8-01 1 26190120 26190120 C T PAQR7 Missense_Mutation p.E71K 0.21 deleterious(0) probably_damaging(1) TCGA-P3-A6T8-01 1 27681827 27681827 C G MAP3K6 3'UTR 0.21 TCGA-P3-A6T8-01 1 36636622 36636622 C T MAP7D1 Missense_Mutation p.P33S 0.42 probably_damaging(0.986) TCGA-P3-A6T8-01 20 21143524 21143524 A T RP4-777D9.2 RNA 0.37 TCGA-P3-A6T8-01 20 32686339 32686339 A G EIF2S2 Missense_Mutation p.F133S 0.18 tolerated(0.47) benign(0.116) TCGA-P3-A6T8-01 20 42264608 42264608 C A IFT52 Silent p.L322L 0.27 TCGA-P3-A6T8-01 20 47682985 47682985 T C CSE1L Silent p.F138F 0.11 TCGA-P3-A6T8-01 21 47836038 47836038 A C PCNT Missense_Mutation p.Q2069P 0.10 possibly_damaging(0.507) TCGA-P3-A6T8-01 2 141643854 141643854 T C LRP1B Missense_Mutation p.I1273V 0.27 benign(0.031) TCGA-P3-A6T8-01 2 178305725 178305725 C T AGPS Silent p.L224L 0.36 TCGA-P3-A6T8-01 2 178684957 178684957 G T PDE11A Missense_Mutation p.H522Q 0.39 tolerated(0.31) probably_damaging(0.985) TCGA-P3-A6T8-01 2 178988612 178988612 G A RBM45 Nonsense_Mutation p.W347* 0.13 TCGA-P3-A6T8-01 2 179742694 179742694 A T CCDC141 Missense_Mutation p.N632K 0.17 tolerated(0.24) benign(0.02) TCGA-P3-A6T8-01 2 196834727 196834727 C T DNAH7 Missense_Mutation p.R717Q 0.19 tolerated(0.71) benign(0.091) TCGA-P3-A6T8-01 2 31133653 31133653 C T GALNT14 3'UTR 0.25 TCGA-P3-A6T8-01 2 48914852 48914852 C T LHCGR Missense_Mutation p.R695H 0.21 tolerated_low_confidence(0.25) benign(0.068) TCGA-P3-A6T8-01 2 73453047 73453047 G C SMYD5 Missense_Mutation p.E410D 0.10 tolerated_low_confidence(0.15) unknown(0) TCGA-P3-A6T8-01 3 118621791 118621791 G A IGSF11 Missense_Mutation p.P291L 0.19 deleterious(0) probably_damaging(0.999) TCGA-P3-A6T8-01 3 15807738 15807738 T A ANKRD28 Intron 0.31 TCGA-P3-A6T8-01 3 167031869 167031869 G A ZBBX Missense_Mutation p.P437L 0.16 tolerated(0.7) benign(0.005) TCGA-P3-A6T8-01 4 119631185 119631185 A G METTL14 Missense_Mutation p.S367G 0.22 deleterious(0.02) benign(0.172) TCGA-P3-A6T8-01 4 123372933 123372933 G C IL2 Missense_Mutation p.Q146E 0.12 deleterious(0) benign(0.365) TCGA-P3-A6T8-01 4 144797955 144797955 G C GYPE Missense_Mutation p.L64V 0.12 tolerated_low_confidence(0.46) benign(0.341) TCGA-P3-A6T8-01 4 154626302 154626302 G A TLR2 Missense_Mutation p.R748H 0.18 deleterious(0) probably_damaging(0.995) TCGA-P3-A6T8-01 4 177052705 177052705 T C WDR17 Missense_Mutation p.F329S 0.18 tolerated(0.19) probably_damaging(0.96) TCGA-P3-A6T8-01 4 89702359 89702359 C A FAM13A Missense_Mutation p.S472I 0.12 deleterious(0) probably_damaging(0.961) TCGA-P3-A6T8-01 5 1057650 1057650 C T SLC12A7 Missense_Mutation p.A988T 0.21 tolerated(0.22) benign(0.01) TCGA-P3-A6T8-01 5 140768882 140768882 G A PCDHGB4 Silent p.P477P 0.48 TCGA-P3-A6T8-01 5 148627423 148627423 C T ABLIM3 Missense_Mutation p.P544S 0.25 tolerated(0.88) benign(0.006) TCGA-P3-A6T8-01 5 176722361 176722361 T - NSD1 Frame_Shift_Del p.G2666Efs*95 0.28 TCGA-P3-A6T8-01 5 37396549 37396549 C T WDR70 Silent p.P123P 0.17 TCGA-P3-A6T8-01 5 37396550 37396550 C T WDR70 Missense_Mutation p.P124S 0.17 tolerated(0.17) benign(0.006) TCGA-P3-A6T8-01 6 106967047 106967047 C T AIM1 Missense_Mutation p.P247L 0.10 deleterious(0) possibly_damaging(0.548) TCGA-P3-A6T8-01 6 130152432 130152432 C A TMEM244 3'Flank 0.14 TCGA-P3-A6T8-01 6 131520706 131520706 G A AKAP7 Missense_Mutation p.R232H 0.24 deleterious(0.04) benign(0.126) TCGA-P3-A6T8-01 6 165827065 165827065 C T PDE10A Missense_Mutation p.S401N 0.14 deleterious(0.02) possibly_damaging(0.585) TCGA-P3-A6T8-01 6 168479832 168479832 C T FRMD1 5'UTR 0.36 TCGA-P3-A6T8-01 6 32047086 32047086 G A RNA5SP206 5'Flank 0.28 TCGA-P3-A6T8-01 6 34558318 34558318 A T C6orf106 3'UTR 0.21 TCGA-P3-A6T8-01 6 43273549 43273549 G A CRIP3 3'UTR 0.20 TCGA-P3-A6T8-01 6 43638684 43638684 T C RSPH9 Missense_Mutation p.I294T 0.11 deleterious_low_confidence(0.01) benign(0.012) TCGA-P3-A6T8-01 6 44249930 44249930 G C TCTE1 Missense_Mutation p.P405A 0.17 tolerated(0.07) possibly_damaging(0.521) TCGA-P3-A6T8-01 6 46604171 46604171 G T CYP39A1 Missense_Mutation p.N229K 0.19 tolerated(0.48) benign(0.005) TCGA-P3-A6T8-01 7 100365577 100365577 C T ZAN Missense_Mutation p.H1662Y 0.24 unknown(0) TCGA-P3-A6T8-01 7 104748308 104748308 G A KMT2E Missense_Mutation p.R1135Q 0.26 deleterious_low_confidence(0.02) benign(0.238) TCGA-P3-A6T8-01 7 121942936 121942936 G A FEZF1 Missense_Mutation p.S329F 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-P3-A6T8-01 7 30090065 30090066 - T PLEKHA8 Frame_Shift_Ins p.P206Tfs*4 0.23 TCGA-P3-A6T8-01 7 98581772 98581772 A G TRRAP Missense_Mutation p.M3031V 0.30 possibly_damaging(0.449) TCGA-P3-A6T8-01 8 103564042 103564042 C T ODF1 Silent p.D29D 0.25 TCGA-P3-A6T8-01 8 121561179 121561179 C T SNTB1 Missense_Mutation p.G386R 0.25 deleterious(0.05) benign(0.098) TCGA-P3-A6T8-01 8 139626118 139626118 C T COL22A1 Missense_Mutation p.G1324S 0.21 unknown(0) TCGA-P3-A6T8-01 8 145616448 145616448 C T ADCK5 Missense_Mutation p.H220Y 0.18 tolerated(0.66) benign(0.088) TCGA-P3-A6T8-01 8 86044107 86044107 G A LRRCC1 Missense_Mutation p.E627K 0.18 deleterious(0.03) possibly_damaging(0.517) TCGA-P3-A6T8-01 9 131757647 131757647 G A NUP188 Missense_Mutation p.E1069K 0.21 tolerated(0.48) benign(0.002) TCGA-P3-A6T8-01 9 139409811 139409817 GGCTGCT - NOTCH1 Frame_Shift_Del p.S647Pfs*123 0.49 TCGA-P3-A6T8-01 9 140343854 140343854 C T NSMF Missense_Mutation p.V529I 0.09 tolerated_low_confidence(0.82) benign(0.048) TCGA-P3-A6T8-01 X 103267793 103267793 G A H2BFWT Missense_Mutation p.P147L 0.20 deleterious(0) benign(0.091) TCGA-P3-A6T8-01 X 105875859 105875859 C T CXorf57 Silent p.I328I 0.42 TCGA-P3-A6T8-01 X 127186185 127186185 T A ACTRT1 Translation_Start_Site p.M1? 0.45 deleterious(0.02) benign(0.008) TCGA-P3-A6T8-01 X 138687061 138687061 C T MCF2 Missense_Mutation p.G623E 0.45 deleterious(0) probably_damaging(1) TCGA-P3-A6T8-01 X 154158428 154158428 T - F8 Frame_Shift_Del p.I1213Ffs*5 0.39 TCGA-P3-A6T8-01 X 73811445 73811445 T G RLIM Missense_Mutation p.T569P 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-QK-A64Z-01 10 101954212 101954212 C T CHUK Missense_Mutation p.R599H 0.27 deleterious(0.01) possibly_damaging(0.847) TCGA-QK-A64Z-01 10 105905260 105905260 G C WDR96 Silent p.L1306L 0.44 TCGA-QK-A64Z-01 10 99120333 99120333 C T RRP12 Missense_Mutation p.E1204K 0.08 deleterious(0.02) benign(0.06) TCGA-QK-A64Z-01 11 4825562 4825562 G T OR52R1 Missense_Mutation p.L17M 0.09 deleterious(0) probably_damaging(0.999) TCGA-QK-A64Z-01 11 7021988 7021988 C A ZNF214 Missense_Mutation p.G309V 0.14 deleterious(0) probably_damaging(0.96) TCGA-QK-A64Z-01 11 7064664 7064664 C T NLRP14 Silent p.D469D 0.07 TCGA-QK-A64Z-01 12 108957917 108957917 G C ISCU Intron 0.21 TCGA-QK-A64Z-01 12 120636928 120636928 G A RPLP0 Missense_Mutation p.A104V 0.20 deleterious(0.02) benign(0.285) TCGA-QK-A64Z-01 12 123687267 123687267 G A MPHOSPH9 Missense_Mutation p.S410L 0.05 tolerated(0.06) benign(0.066) TCGA-QK-A64Z-01 12 4796253 4796253 G C NDUFA9 Silent p.P371P 0.16 TCGA-QK-A64Z-01 13 101721054 101721054 C A NALCN Silent p.L1441L 0.17 TCGA-QK-A64Z-01 13 43543251 43543251 G C EPSTI1 Missense_Mutation p.H104D 0.11 deleterious(0.02) benign(0.164) TCGA-QK-A64Z-01 14 105995411 105995411 C T TMEM121 Silent p.F80F 0.14 TCGA-QK-A64Z-01 14 20389326 20389326 T G OR4K5 Silent p.L187L 0.05 TCGA-QK-A64Z-01 14 51224911 51224911 C G NIN Missense_Mutation p.R946T 0.25 deleterious(0.01) possibly_damaging(0.615) TCGA-QK-A64Z-01 14 51225167 51225167 C G NIN Missense_Mutation p.E861Q 0.15 tolerated(0.09) probably_damaging(0.999) TCGA-QK-A64Z-01 15 64673677 64673677 C G KIAA0101 5'UTR 0.30 TCGA-QK-A64Z-01 15 65447200 65447200 C T CLPX Missense_Mutation p.E511K 0.21 tolerated(0.31) benign(0.444) TCGA-QK-A64Z-01 15 68040920 68040920 T A MAP2K5 Missense_Mutation p.L372Q 0.25 deleterious(0) probably_damaging(0.95) TCGA-QK-A64Z-01 15 73047994 73047994 A T ADPGK Missense_Mutation p.V281D 0.09 deleterious(0.02) possibly_damaging(0.622) TCGA-QK-A64Z-01 16 70187310 70187310 A G PDPR Missense_Mutation p.Y690C 0.12 deleterious(0) probably_damaging(1) TCGA-QK-A64Z-01 16 70698221 70698221 G A MTSS1L Missense_Mutation p.R535C 0.28 deleterious(0) probably_damaging(0.998) TCGA-QK-A64Z-01 16 74951892 74951892 G A WDR59 Nonsense_Mutation p.Q301* 0.19 TCGA-QK-A64Z-01 17 39086251 39086251 C G KRT23 Missense_Mutation p.E193Q 0.17 deleterious(0) probably_damaging(1) TCGA-QK-A64Z-01 17 48503655 48503655 G A ACSF2 Silent p.G11G 0.25 TCGA-QK-A64Z-01 17 58150579 58150579 G C HEATR6 Missense_Mutation p.S177C 0.22 deleterious(0.01) possibly_damaging(0.522) TCGA-QK-A64Z-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.20 deleterious(0) probably_damaging(0.998) TCGA-QK-A64Z-01 17 78332134 78332134 G A RNF213 Missense_Mutation p.A3637T 0.17 probably_damaging(1) TCGA-QK-A64Z-01 18 14105477 14105477 G T ZNF519 Silent p.G354G 0.19 TCGA-QK-A64Z-01 18 59174703 59174703 G A CDH20 Missense_Mutation p.M309I 0.13 tolerated(0.22) benign(0.024) TCGA-QK-A64Z-01 19 22271732 22271732 C A ZNF257 Missense_Mutation p.H394N 0.23 deleterious(0.01) possibly_damaging(0.784) TCGA-QK-A64Z-01 19 3179954 3179954 T C S1PR4 3'UTR 0.16 TCGA-QK-A64Z-01 19 3600021 3600021 G A TBXA2R Silent p.G204G 0.14 TCGA-QK-A64Z-01 19 42839327 42839327 C T MEGF8 Silent p.G233G 0.08 TCGA-QK-A64Z-01 19 51226627 51226627 G A CLEC11A 5'UTR 0.17 TCGA-QK-A64Z-01 19 53209567 53209567 C T ZNF611 Silent p.R247R 0.17 TCGA-QK-A64Z-01 19 54416154 54416154 G C CACNG7 Silent p.L23L 0.07 TCGA-QK-A64Z-01 19 54666452 54666452 G C TMC4 Missense_Mutation p.L492V 0.20 deleterious(0.01) possibly_damaging(0.822) TCGA-QK-A64Z-01 19 8601169 8601169 C T MYO1F Silent p.G670G 0.16 TCGA-QK-A64Z-01 19 9066224 9066224 G A MUC16 Silent p.L7074L 0.22 TCGA-QK-A64Z-01 1 149882448 149882448 C T SV2A Nonsense_Mutation p.W295* 0.20 TCGA-QK-A64Z-01 1 152324225 152324225 C T FLG2 Missense_Mutation p.G2013R 0.23 probably_damaging(0.979) TCGA-QK-A64Z-01 1 155167915 155167915 G T THBS3 Missense_Mutation p.T724K 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-QK-A64Z-01 1 155300201 155300201 C T RUSC1 Missense_Mutation p.R850W 0.06 deleterious(0) probably_damaging(0.997) TCGA-QK-A64Z-01 1 16935096 16935096 G A NBPF1 5'UTR 0.07 TCGA-QK-A64Z-01 1 197889125 197889125 G A LHX9 Silent p.E66E 0.21 TCGA-QK-A64Z-01 1 248004707 248004707 G A OR11L1 Silent p.S164S 0.19 TCGA-QK-A64Z-01 1 39838217 39838217 T C MACF1 Silent p.L2326L 0.28 TCGA-QK-A64Z-01 1 41303411 41303411 C T KCNQ4 Missense_Mutation p.A607V 0.27 tolerated(0.27) benign(0.007) TCGA-QK-A64Z-01 1 44457953 44457953 G C CCDC24 Missense_Mutation p.D66H 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-QK-A64Z-01 1 45806993 45806993 G A TOE1 Missense_Mutation p.D72N 0.19 tolerated(1) benign(0.017) TCGA-QK-A64Z-01 20 50048903 50048903 G A NFATC2 Missense_Mutation p.S808L 0.23 deleterious(0.04) possibly_damaging(0.449) TCGA-QK-A64Z-01 20 57611811 57611811 G A SLMO2 Missense_Mutation p.S99L 0.22 tolerated(0.05) benign(0.151) TCGA-QK-A64Z-01 2 166019313 166019313 C G SCN3A Silent p.L240L 0.25 TCGA-QK-A64Z-01 2 170063464 170063464 C T LRP2 Missense_Mutation p.D2256N 0.19 probably_damaging(1) TCGA-QK-A64Z-01 2 176964708 176964708 C T HOXD12 Missense_Mutation p.P60L 0.20 deleterious(0.01) benign(0.424) TCGA-QK-A64Z-01 2 179476184 179476184 A G TTN Silent p.Y16924Y 0.26 TCGA-QK-A64Z-01 2 202136277 202136277 C A CASP8 Nonsense_Mutation p.S174* 0.16 TCGA-QK-A64Z-01 2 207634815 207634815 G A FASTKD2 Missense_Mutation p.E260K 0.12 deleterious(0) probably_damaging(0.948) TCGA-QK-A64Z-01 2 210594683 210594683 C T MAP2 Silent p.V1755V 0.15 TCGA-QK-A64Z-01 2 234669575 234669575 C T UGT1A8 Intron 0.16 TCGA-QK-A64Z-01 2 239162045 239162045 G A PER2 Silent p.H873H 0.23 TCGA-QK-A64Z-01 2 239976475 239976475 G A HDAC4 Missense_Mutation p.R1015C 0.20 tolerated(0.06) benign(0.03) TCGA-QK-A64Z-01 3 124380773 124380773 G C KALRN Missense_Mutation p.E206Q 0.18 tolerated(0.06) possibly_damaging(0.782) TCGA-QK-A64Z-01 3 125166613 125166621 ATTCACAGG - SNX4 3'UTR 0.15 TCGA-QK-A64Z-01 3 164908602 164908602 G C SLITRK3 Missense_Mutation p.A6G 0.12 deleterious_low_confidence(0.01) benign(0.018) TCGA-QK-A64Z-01 3 48701566 48701566 C G CELSR3 5'Flank 0.20 TCGA-QK-A64Z-01 3 99536833 99536833 G A CMSS1 Missense_Mutation p.D4N 0.25 tolerated(0.05) benign(0.048) TCGA-QK-A64Z-01 4 103647819 103647819 C A MANBA Missense_Mutation p.D67Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-QK-A64Z-01 4 174254706 174254706 G C HMGB2 Missense_Mutation p.P32R 0.20 deleterious(0) probably_damaging(0.957) TCGA-QK-A64Z-01 4 187530345 187530345 G A FAT1 Nonsense_Mutation p.R3400* 0.31 TCGA-QK-A64Z-01 4 187540437 187540437 G A FAT1 Missense_Mutation p.H2435Y 0.29 possibly_damaging(0.511) TCGA-QK-A64Z-01 4 3105592 3105592 C G HTT Silent p.L170L 0.16 TCGA-QK-A64Z-01 5 137542373 137542373 C T CDC23 Missense_Mutation p.E79K 0.10 tolerated(0.2) benign(0.063) TCGA-QK-A64Z-01 5 139937983 139937983 T C APBB3 3'UTR 0.21 TCGA-QK-A64Z-01 5 140186911 140186911 C T PCDHA4 Missense_Mutation p.R47C 0.14 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-QK-A64Z-01 5 149775923 149775923 C G TCOF1 Nonsense_Mutation p.S1287* 0.18 TCGA-QK-A64Z-01 5 878569 878569 G A BRD9 Missense_Mutation p.S391L 0.11 deleterious(0) possibly_damaging(0.557) TCGA-QK-A64Z-01 6 10749889 10749889 G A TMEM14B Missense_Mutation p.A20T 0.05 tolerated(0.1) possibly_damaging(0.58) TCGA-QK-A64Z-01 6 26285504 26285504 T C HIST1H4H Missense_Mutation p.E75G 0.21 deleterious(0) probably_damaging(0.977) TCGA-QK-A64Z-01 6 31646965 31646965 C T LY6G5C Missense_Mutation p.E68K 0.03 deleterious(0) probably_damaging(0.99) TCGA-QK-A64Z-01 6 32169899 32169899 C T NOTCH4 Missense_Mutation p.E1237K 0.13 tolerated(0.16) possibly_damaging(0.814) TCGA-QK-A64Z-01 6 32169900 32169900 T C NOTCH4 Silent p.E1236E 0.13 TCGA-QK-A64Z-01 6 47847088 47847088 C T PTCHD4 Missense_Mutation p.D498N 0.24 tolerated(0.43) benign(0.006) TCGA-QK-A64Z-01 6 88367727 88367727 G A ORC3 Missense_Mutation p.C562Y 0.30 deleterious(0.01) benign(0.273) TCGA-QK-A64Z-01 7 102738893 102738893 T - ARMC10 Frame_Shift_Del p.F310Sfs*12 0.13 TCGA-QK-A64Z-01 7 104752839 104752847 CCTCCACCT - KMT2E In_Frame_Del p.P1550_P1552del 0.15 TCGA-QK-A64Z-01 7 122774542 122774542 A G SLC13A1 Missense_Mutation p.F285S 0.11 deleterious(0) probably_damaging(0.997) TCGA-QK-A64Z-01 7 138968054 138968054 G A UBN2 Silent p.L801L 0.17 TCGA-QK-A64Z-01 7 147675054 147675054 G A CNTNAP2 Missense_Mutation p.V786I 0.12 tolerated(0.64) benign(0.062) TCGA-QK-A64Z-01 7 150749682 150749682 C T ASIC3 Missense_Mutation p.P520L 0.19 tolerated_low_confidence(0.2) benign(0) TCGA-QK-A64Z-01 7 31877577 31877577 C T PDE1C Missense_Mutation p.R390Q 0.06 deleterious(0.01) probably_damaging(0.927) TCGA-QK-A64Z-01 7 4798948 4798948 C T FOXK1 Missense_Mutation p.P473L 0.17 deleterious(0) probably_damaging(0.98) TCGA-QK-A64Z-01 7 81593596 81593596 G C CACNA2D1 Missense_Mutation p.S885C 0.17 deleterious(0) probably_damaging(0.957) TCGA-QK-A64Z-01 7 91624076 91624076 A T AKAP9 Missense_Mutation p.I240F 0.17 probably_damaging(0.987) TCGA-QK-A64Z-01 8 26366192 26366192 G A PNMA2 Missense_Mutation p.P27L 0.24 deleterious(0) benign(0.149) TCGA-QK-A64Z-01 8 56015801 56015801 C G XKR4 Missense_Mutation p.C251W 0.11 deleterious(0) probably_damaging(0.998) TCGA-QK-A64Z-01 8 72946534 72946534 G T TRPA1 Silent p.I878I 0.21 TCGA-QK-A64Z-01 9 108370142 108370142 C G FKTN Silent p.L230L 0.15 TCGA-QK-A64Z-01 9 21968242 21968242 C T CDKN2A Splice_Site 0.23 TCGA-QK-A64Z-01 9 35664477 35664477 G C ARHGEF39 Silent p.P82P 0.02 TCGA-QK-A64Z-01 9 35733425 35733425 G A CREB3 Silent p.E126E 0.26 TCGA-QK-A64Z-01 9 77431589 77431589 C T TRPM6 Nonsense_Mutation p.W435* 0.28 TCGA-QK-A64Z-01 X 100879933 100879933 C G ARMCX3 5'UTR 0.16 TCGA-QK-A64Z-01 X 100880789 100880789 C G ARMCX3 Missense_Mutation p.P274A 0.27 deleterious(0) probably_damaging(0.989) TCGA-QK-A64Z-01 X 100881197 100881197 C T ARMCX3 3'UTR 0.25 TCGA-QK-A64Z-01 X 151131017 151131017 C G GABRE Silent p.V147V 0.16 TCGA-QK-A64Z-01 X 34961123 34961123 C T FAM47B Missense_Mutation p.R59C 0.22 deleterious(0.03) probably_damaging(0.958) TCGA-QK-A64Z-01 X 79939569 79939569 A T BRWD3 Nonsense_Mutation p.Y1391* 0.27 TCGA-QK-A652-01 10 103987462 103987462 T A ELOVL3 Missense_Mutation p.F61I 0.17 deleterious(0) probably_damaging(0.913) TCGA-QK-A652-01 10 105963513 105963513 C T WDR96 Missense_Mutation p.E338K 0.06 tolerated(1) benign(0.001) TCGA-QK-A652-01 11 2482807 2482807 C T KCNQ1 Intron 0.11 TCGA-QK-A652-01 11 31125264 31125264 C A DCDC1 Missense_Mutation p.A602S 0.16 tolerated(0.55) benign(0.01) TCGA-QK-A652-01 11 64883890 64883890 T A ZNHIT2 3'UTR 0.17 TCGA-QK-A652-01 12 52647530 52647530 G A KRT7 3'Flank 0.22 TCGA-QK-A652-01 12 52774199 52774199 G C KRT84 Missense_Mutation p.L458V 0.22 deleterious(0) probably_damaging(0.998) TCGA-QK-A652-01 12 81205334 81205334 T C LIN7A Silent p.R204R 0.23 TCGA-QK-A652-01 14 47530617 47530617 G A MDGA2 Missense_Mutation p.R454W 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-QK-A652-01 15 59499196 59499196 G A LDHAL6B Silent p.A19A 0.12 TCGA-QK-A652-01 16 49430502 49430502 G A C16orf78 Missense_Mutation p.R188H 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-QK-A652-01 16 50338857 50338857 C T ADCY7 Missense_Mutation p.R528W 0.06 tolerated(0.2) benign(0.04) TCGA-QK-A652-01 16 67236795 67236795 G T ELMO3 Silent p.L574L 0.13 TCGA-QK-A652-01 17 27239675 27239675 G C PHF12 Silent p.T638T 0.22 TCGA-QK-A652-01 17 5086093 5086093 G T ZNF594 Missense_Mutation p.P487T 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-QK-A652-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.11 deleterious(0) probably_damaging(1) TCGA-QK-A652-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.17 deleterious(0) probably_damaging(1) TCGA-QK-A652-01 17 76137079 76137079 G A TMC8 Silent p.P689P 0.17 TCGA-QK-A652-01 18 74639389 74639389 T C ZNF236 Missense_Mutation p.S1442P 0.20 deleterious(0.05) possibly_damaging(0.797) TCGA-QK-A652-01 19 30935349 30935349 C T ZNF536 Missense_Mutation p.R294C 0.08 deleterious(0) probably_damaging(0.999) TCGA-QK-A652-01 19 38572282 38572282 T G SIPA1L3 Missense_Mutation p.L26R 0.09 deleterious(0.02) benign(0.022) TCGA-QK-A652-01 1 12091374 12091374 G A MIIP Missense_Mutation p.A332T 0.18 deleterious(0.02) probably_damaging(0.967) TCGA-QK-A652-01 1 155726968 155726968 T C GON4L Intron 0.21 TCGA-QK-A652-01 1 183596529 183596529 C T ARPC5 3'UTR 0.11 TCGA-QK-A652-01 1 47144306 47144306 G T EFCAB14 Missense_Mutation p.L439I 0.07 deleterious(0) probably_damaging(0.971) TCGA-QK-A652-01 20 60986001 60986001 G T RBBP8NL Missense_Mutation p.P643H 0.12 deleterious(0) possibly_damaging(0.781) TCGA-QK-A652-01 21 34923429 34923429 A T SON Missense_Mutation p.E631V 0.12 benign(0.403) TCGA-QK-A652-01 21 41300944 41300944 G C PCP4 Missense_Mutation p.D33H 0.16 deleterious(0) probably_damaging(0.984) TCGA-QK-A652-01 22 37328806 37328806 G A CSF2RB Splice_Site p.X338_splice 0.14 TCGA-QK-A652-01 2 11053214 11053214 C A KCNF1 Missense_Mutation p.T221K 0.08 tolerated(0.94) benign(0.198) TCGA-QK-A652-01 2 137872846 137872846 C T THSD7B Missense_Mutation p.A451V 0.20 tolerated(0.2) benign(0.44) TCGA-QK-A652-01 2 145187367 145187367 G A ZEB2 Silent p.N100N 0.15 TCGA-QK-A652-01 2 171248916 171248916 G A MYO3B Missense_Mutation p.V568M 0.17 tolerated(0.22) benign(0.038) TCGA-QK-A652-01 2 200137348 200137348 G T SATB2 Silent p.P596P 0.16 TCGA-QK-A652-01 2 220404590 220404590 C T CHPF Missense_Mutation p.G615R 0.08 deleterious(0.02) benign(0.111) TCGA-QK-A652-01 2 220439713 220439713 T G INHA Missense_Mutation p.L189R 0.09 deleterious(0) probably_damaging(0.971) TCGA-QK-A652-01 2 220502432 220502432 C T SLC4A3 Nonsense_Mutation p.Q916* 0.12 TCGA-QK-A652-01 2 231973926 231973927 CT - HTR2B Frame_Shift_Del p.L250Ffs*22 0.10 TCGA-QK-A652-01 2 26667093 26667093 G A DRC1 Silent p.L344L 0.18 TCGA-QK-A652-01 2 42995037 42995037 C T HAAO Missense_Mutation p.G221D 0.17 tolerated(0.39) benign(0.004) TCGA-QK-A652-01 2 73298860 73298860 C A SFXN5 5'UTR 0.21 TCGA-QK-A652-01 2 80646701 80646701 G A CTNNA2 Missense_Mutation p.R422H 0.11 tolerated(0.17) benign(0.137) TCGA-QK-A652-01 3 114018536 114018536 G A TIGIT Missense_Mutation p.A162T 0.43 tolerated(0.98) benign(0.002) TCGA-QK-A652-01 3 167240158 167240158 C T WDR49 Missense_Mutation p.D555N 0.15 tolerated(0.24) benign(0.004) TCGA-QK-A652-01 3 183547297 183547297 G A PARL 3'UTR 0.18 TCGA-QK-A652-01 4 126400915 126400915 G A FAT4 Missense_Mutation p.A4165T 0.19 benign(0.002) TCGA-QK-A652-01 4 79403045 79403045 C T FRAS1 Missense_Mutation p.A2844V 0.16 benign(0.328) TCGA-QK-A652-01 4 81967395 81967395 G A BMP3 Missense_Mutation p.D274N 0.15 tolerated(0.1) benign(0.007) TCGA-QK-A652-01 5 140209295 140209295 C T PCDHA6 Missense_Mutation p.A540V 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.691) TCGA-QK-A652-01 5 140590457 140590457 G A PCDHB12 Missense_Mutation p.V660M 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.503) TCGA-QK-A652-01 5 178359524 178359524 C T ZFP2 Missense_Mutation p.H404Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-QK-A652-01 6 157488283 157488283 T C ARID1B Missense_Mutation p.Y997H 0.14 probably_damaging(0.999) TCGA-QK-A652-01 9 102866838 102866838 C T INVS Missense_Mutation p.S12L 0.14 deleterious(0) benign(0.42) TCGA-QK-A652-01 9 139409770 139409770 G C NOTCH1 Nonsense_Mutation p.Y662* 0.24 TCGA-QK-A652-01 9 21971153 21971153 C A CDKN2A Nonsense_Mutation p.E69* 0.28 TCGA-QK-A652-01 9 79841447 79841447 G T VPS13A Missense_Mutation p.W430C 0.22 deleterious(0) probably_damaging(0.995) TCGA-QK-A652-01 X 152807232 152807232 C T ATP2B3 Missense_Mutation p.T171M 0.33 deleterious(0) probably_damaging(0.977) TCGA-QK-A652-01 X 53563190 53563190 T A HUWE1 Missense_Mutation p.D4150V 0.32 unknown(0) TCGA-QK-A6IF-01 10 97028545 97028545 G A PDLIM1 Missense_Mutation p.S108F 0.23 deleterious(0) probably_damaging(0.966) TCGA-QK-A6IF-01 11 64794949 64794949 G A SNX15 5'UTR 0.06 TCGA-QK-A6IF-01 12 103352385 103352385 G A ASCL1 Silent p.A121A 0.17 TCGA-QK-A6IF-01 12 72027093 72027093 T A ZFC3H1 Missense_Mutation p.E879V 0.36 deleterious(0) probably_damaging(0.994) TCGA-QK-A6IF-01 12 98849305 98849305 C G SLC9A7P1 RNA 0.25 TCGA-QK-A6IF-01 14 70235548 70235548 A G SRSF5 Silent p.R77R 0.05 TCGA-QK-A6IF-01 14 92266688 92266688 G A TC2N Silent p.P166P 0.08 TCGA-QK-A6IF-01 15 41372017 41372017 C T INO80 Missense_Mutation p.R338H 0.28 deleterious(0.03) benign(0.062) TCGA-QK-A6IF-01 16 30960832 30960832 C T ORAI3 Silent p.F74F 0.35 TCGA-QK-A6IF-01 16 3361852 3361852 G A ZNF75A 5'UTR 0.58 TCGA-QK-A6IF-01 17 39471807 39471807 G A KRTAP17-1 Silent p.C32C 0.57 TCGA-QK-A6IF-01 19 12221164 12221164 C T ZNF788 Silent p.D36D 0.39 TCGA-QK-A6IF-01 19 12502748 12502748 G A ZNF799 Missense_Mutation p.S155L 0.38 tolerated(0.31) possibly_damaging(0.791) TCGA-QK-A6IF-01 19 50905073 50905073 C T POLD1 Missense_Mutation p.R119C 0.31 tolerated(0.19) benign(0.001) TCGA-QK-A6IF-01 1 152282739 152282739 G A FLG Silent p.S1541S 0.10 TCGA-QK-A6IF-01 1 186135336 186135336 G A HMCN1 Missense_Mutation p.G5114R 0.22 probably_damaging(0.946) TCGA-QK-A6IF-01 1 236882250 236882250 G A ACTN2 Missense_Mutation p.V100I 0.32 tolerated(0.07) benign(0.065) TCGA-QK-A6IF-01 1 31838696 31838696 G A FABP3 3'UTR 0.27 TCGA-QK-A6IF-01 1 32625009 32625009 T G KPNA6 Silent p.A145A 0.36 TCGA-QK-A6IF-01 1 876569 876569 G A SAMD11 Missense_Mutation p.G251D 0.25 tolerated(0.07) benign(0.071) TCGA-QK-A6IF-01 21 46276126 46276126 C T PTTG1IP Missense_Mutation p.R144Q 0.28 deleterious(0) benign(0.315) TCGA-QK-A6IF-01 2 101591395 101591395 C T NPAS2 Missense_Mutation p.S424L 0.84 deleterious(0) possibly_damaging(0.804) TCGA-QK-A6IF-01 2 179238641 179238641 C T OSBPL6 Missense_Mutation p.L499F 0.08 tolerated(0.09) possibly_damaging(0.885) TCGA-QK-A6IF-01 2 202687545 202687545 G A CDK15 Silent p.K154K 0.55 TCGA-QK-A6IF-01 2 238483701 238483701 G T RAB17 Missense_Mutation p.N200K 0.56 tolerated(0.17) benign(0.003) TCGA-QK-A6IF-01 3 48415175 48415175 A G FBXW12 Missense_Mutation p.Y89C 0.33 tolerated(0.17) benign(0.001) TCGA-QK-A6IF-01 4 110451514 110451514 C T SEC24B Missense_Mutation p.S1049L 0.42 tolerated(0.39) benign(0.087) TCGA-QK-A6IF-01 5 169015518 169015518 G A SPDL1 Missense_Mutation p.S33N 0.33 tolerated(0.08) probably_damaging(0.988) TCGA-QK-A6IF-01 5 176309093 176309093 G A HK3 Missense_Mutation p.R697W 0.41 deleterious(0) probably_damaging(0.916) TCGA-QK-A6IF-01 6 29911150 29911150 T A HLA-A Missense_Mutation p.L150Q 0.21 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-QK-A6IF-01 6 74228090 74228090 C T EEF1A1 Missense_Mutation p.G339D 0.30 tolerated_low_confidence(0.27) possibly_damaging(0.697) TCGA-QK-A6IF-01 7 100678383 100678383 C T MUC17 Missense_Mutation p.T1229M 0.27 unknown(0) TCGA-QK-A6IF-01 8 91963412 91963412 C A NECAB1 Missense_Mutation p.T337K 0.32 deleterious(0) benign(0.073) TCGA-QK-A6IF-01 9 101546340 101546340 G A ANKS6 Missense_Mutation p.T336M 0.34 tolerated(0.23) benign(0.017) TCGA-QK-A6IF-01 9 136131236 136131236 G A RP11-430N14.4 5'Flank 0.24 TCGA-QK-A6IF-01 9 95491374 95491374 G A BICD2 Missense_Mutation p.R129C 0.06 deleterious(0) possibly_damaging(0.888) TCGA-QK-A6IF-01 X 100333908 100333908 C T TMEM35 5'UTR 0.39 TCGA-QK-A6IF-01 X 107979125 107979126 - A IRS4 Frame_Shift_Ins p.Y151Ifs*82 0.36 TCGA-QK-A6IG-01 10 105207066 105207066 G A CALHM2 Missense_Mutation p.T272M 0.35 tolerated(0.08) possibly_damaging(0.57) TCGA-QK-A6IG-01 10 119798775 119798775 A C RAB11FIP2 Missense_Mutation p.F325V 0.08 deleterious(0) probably_damaging(0.979) TCGA-QK-A6IG-01 10 18963007 18963007 G C ARL5B Missense_Mutation p.S145T 0.09 tolerated(0.75) benign(0.001) TCGA-QK-A6IG-01 10 27412521 27412521 C T YME1L1 Missense_Mutation p.E410K 0.15 deleterious(0) probably_damaging(0.996) TCGA-QK-A6IG-01 10 52067886 52067886 C T SGMS1 Nonsense_Mutation p.W306* 0.17 TCGA-QK-A6IG-01 10 5498681 5498681 G A NET1 Silent p.S505S 0.26 TCGA-QK-A6IG-01 10 61822922 61822922 G C ANK3 Nonsense_Mutation p.S4181* 0.17 TCGA-QK-A6IG-01 10 75671331 75671331 G T PLAU Silent p.A6A 0.09 TCGA-QK-A6IG-01 10 94757357 94757357 G A EXOC6 Missense_Mutation p.V694I 0.20 tolerated(0.07) possibly_damaging(0.458) TCGA-QK-A6IG-01 10 99003736 99003736 G A ARHGAP19 Missense_Mutation p.L392F 0.31 deleterious(0) probably_damaging(0.992) TCGA-QK-A6IG-01 11 107799349 107799349 G T RAB39A Missense_Mutation p.V19L 0.12 deleterious(0.01) probably_damaging(0.983) TCGA-QK-A6IG-01 11 17113797 17113797 C T PIK3C2A Missense_Mutation p.R1493K 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-QK-A6IG-01 11 3022357 3022357 C G CARS Missense_Mutation p.G828A 0.15 tolerated(0.06) benign(0.053) TCGA-QK-A6IG-01 11 34473710 34473710 G A CAT Missense_Mutation p.V146I 0.50 deleterious(0) benign(0.225) TCGA-QK-A6IG-01 11 47380496 47380496 G A SPI1 Missense_Mutation p.S132L 0.28 tolerated(0.31) benign(0.2) TCGA-QK-A6IG-01 11 60699312 60699312 C T TMEM132A Silent p.L391L 0.16 TCGA-QK-A6IG-01 11 9810760 9810760 C T SBF2 Missense_Mutation p.D1610N 0.36 deleterious(0.03) benign(0.007) TCGA-QK-A6IG-01 12 119568489 119568489 C T SRRM4 Silent p.R207R 0.16 TCGA-QK-A6IG-01 12 122745861 122745861 G A VPS33A Missense_Mutation p.L144F 0.41 tolerated(0.32) benign(0.174) TCGA-QK-A6IG-01 12 12419613 12419613 A G LRP6 Splice_Site p.X19_splice 0.18 TCGA-QK-A6IG-01 12 13068917 13068917 C T GPRC5A 3'UTR 0.29 TCGA-QK-A6IG-01 12 51634129 51634129 C T DAZAP2 Nonsense_Mutation p.Q6* 0.10 TCGA-QK-A6IG-01 12 56481628 56481628 C G ERBB3 Silent p.P221P 0.22 TCGA-QK-A6IG-01 12 58152613 58152613 G A MARCH9 Missense_Mutation p.R325Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-QK-A6IG-01 12 76741101 76741101 T G BBS10 Missense_Mutation p.N222H 0.29 tolerated(0.85) benign(0.017) TCGA-QK-A6IG-01 13 88328729 88328729 C A SLITRK5 Silent p.I362I 0.11 TCGA-QK-A6IG-01 14 105412777 105412777 G C AHNAK2 Missense_Mutation p.S3004C 0.17 possibly_damaging(0.896) TCGA-QK-A6IG-01 14 24845619 24845619 C A NFATC4 Missense_Mutation p.P789T 0.12 deleterious(0.02) probably_damaging(0.909) TCGA-QK-A6IG-01 14 53185712 53185712 G A PSMC6 Missense_Mutation p.E259K 0.20 tolerated(0.07) benign(0.192) TCGA-QK-A6IG-01 14 54950435 54950435 C G GMFB Silent p.L18L 0.19 TCGA-QK-A6IG-01 14 70633987 70633987 C T SLC8A3 Missense_Mutation p.E385K 0.36 tolerated(0.05) benign(0.426) TCGA-QK-A6IG-01 14 70990093 70990093 G C ADAM20 Nonsense_Mutation p.S511* 0.15 TCGA-QK-A6IG-01 15 28090163 28090163 C T OCA2 Missense_Mutation p.V792M 0.30 deleterious(0) probably_damaging(1) TCGA-QK-A6IG-01 15 40330554 40330554 C T SRP14 Missense_Mutation p.E47K 0.16 tolerated(0.29) benign(0.057) TCGA-QK-A6IG-01 15 74637401 74637401 G A CYP11A1 Silent p.F203F 0.29 TCGA-QK-A6IG-01 16 2143662 2143662 G A PKD1 Silent p.S3633S 0.23 TCGA-QK-A6IG-01 16 25266692 25266692 C T ZKSCAN2 Missense_Mutation p.E141K 0.35 tolerated(0.09) benign(0.027) TCGA-QK-A6IG-01 16 67397504 67397504 G A LRRC36 Missense_Mutation p.G197R 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-QK-A6IG-01 16 71483481 71483481 G A ZNF23 Silent p.I149I 0.16 TCGA-QK-A6IG-01 17 12655993 12655993 C G MYOCD Missense_Mutation p.S463C 0.15 deleterious(0) probably_damaging(1) TCGA-QK-A6IG-01 17 26726702 26726702 G C SLC46A1 Silent p.L450L 0.08 TCGA-QK-A6IG-01 17 39334307 39334307 C T KRTAP4-2 Missense_Mutation p.R37H 0.40 tolerated(0.06) unknown(0) TCGA-QK-A6IG-01 17 39921284 39921284 G A JUP Silent p.L315L 0.11 TCGA-QK-A6IG-01 17 45896398 45896398 G T OSBPL7 Missense_Mutation p.A108D 0.06 deleterious(0) probably_damaging(0.96) TCGA-QK-A6IG-01 17 46805632 46805632 C T HOXB13 Silent p.A108A 0.36 TCGA-QK-A6IG-01 17 48692763 48692763 C T CACNA1G Missense_Mutation p.R1601W 0.24 deleterious(0) probably_damaging(0.993) TCGA-QK-A6IG-01 17 59533838 59533838 T C TBX4 5'UTR 0.25 TCGA-QK-A6IG-01 17 62291075 62291075 G C TEX2 Missense_Mutation p.S168C 0.14 deleterious(0.04) possibly_damaging(0.785) TCGA-QK-A6IG-01 17 63554199 63554199 C T AXIN2 Silent p.S180S 0.15 TCGA-QK-A6IG-01 17 72541894 72541894 G A CD300C Missense_Mutation p.R10W 0.44 deleterious(0.02) unknown(0) TCGA-QK-A6IG-01 17 72838560 72838560 G C GRIN2C 3'UTR 0.06 TCGA-QK-A6IG-01 17 72838568 72838568 G A GRIN2C 3'UTR 0.10 TCGA-QK-A6IG-01 17 7577085 7577085 C A TP53 Nonsense_Mutation p.E285* 0.68 TCGA-QK-A6IG-01 17 80045999 80045999 G C FASN Silent p.P926P 0.14 TCGA-QK-A6IG-01 18 50912420 50912420 T G DCC Missense_Mutation p.S789R 0.13 deleterious(0) probably_damaging(0.998) TCGA-QK-A6IG-01 18 77917940 77917940 G A PARD6G Missense_Mutation p.P282L 0.16 tolerated(0.1) benign(0.012) TCGA-QK-A6IG-01 19 10794737 10794737 G C ILF3 Intron 0.12 TCGA-QK-A6IG-01 19 36034471 36034471 G A GAPDHS Intron 0.11 TCGA-QK-A6IG-01 19 40384065 40384065 C G FCGBP Missense_Mutation p.G3182A 0.19 probably_damaging(0.939) TCGA-QK-A6IG-01 19 40520952 40520952 G A ZNF546 Missense_Mutation p.R592H 0.30 tolerated(0.55) benign(0.383) TCGA-QK-A6IG-01 19 41025868 41025868 C T SPTBN4 Missense_Mutation p.A1155V 0.21 tolerated(0.06) probably_damaging(0.984) TCGA-QK-A6IG-01 19 4110621 4110621 C T MAP2K2 Silent p.R112R 0.16 TCGA-QK-A6IG-01 19 41800316 41800316 C - HNRNPUL1 Frame_Shift_Del p.K448Rfs*17 0.30 TCGA-QK-A6IG-01 19 44417669 44417669 T C ZNF45 Missense_Mutation p.Y640C 0.09 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IG-01 19 49547355 49547355 C A CGB5 5'UTR 0.32 TCGA-QK-A6IG-01 19 50098865 50098865 G A PRR12 Missense_Mutation p.A425T 0.27 possibly_damaging(0.682) TCGA-QK-A6IG-01 19 59067527 59067527 C T UBE2M Missense_Mutation p.E161K 0.32 tolerated(0.45) possibly_damaging(0.557) TCGA-QK-A6IG-01 19 9325150 9325150 G A OR7D4 Missense_Mutation p.R122W 0.25 deleterious(0.03) benign(0.003) TCGA-QK-A6IG-01 19 9406167 9406167 G A ZNF699 Missense_Mutation p.T638I 0.34 deleterious(0.02) benign(0.046) TCGA-QK-A6IG-01 19 9868341 9868341 G A ZNF846 Missense_Mutation p.T471M 0.22 deleterious(0) benign(0.304) TCGA-QK-A6IG-01 1 118644398 118644398 C T SPAG17 Missense_Mutation p.R200Q 0.34 tolerated(0.18) benign(0.042) TCGA-QK-A6IG-01 1 120612159 120612159 A C NOTCH2 5'UTR 0.50 TCGA-QK-A6IG-01 1 150636133 150636133 C T GOLPH3L Missense_Mutation p.R97H 0.51 deleterious(0) benign(0.071) TCGA-QK-A6IG-01 1 151372586 151372586 C T PSMB4 Silent p.V90V 0.15 TCGA-QK-A6IG-01 1 16258342 16258342 G C SPEN Missense_Mutation p.K1869N 0.13 probably_damaging(0.996) TCGA-QK-A6IG-01 1 16957400 16957400 G T CROCCP2 RNA 0.36 TCGA-QK-A6IG-01 1 179112101 179112101 C T ABL2 Intron 0.64 TCGA-QK-A6IG-01 1 36921903 36921903 T G MRPS15 Missense_Mutation p.N174T 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-QK-A6IG-01 1 43804213 43804213 G A MPL Silent p.R71R 0.38 TCGA-QK-A6IG-01 1 76378501 76378501 A G MSH4 Missense_Mutation p.S914G 0.13 tolerated(0.09) benign(0.027) TCGA-QK-A6IG-01 1 9778813 9778813 C T PIK3CD Missense_Mutation p.S361L 0.21 tolerated(0.07) benign(0.008) TCGA-QK-A6IG-01 20 1558987 1558987 G A RP4-576H24.4 Missense_Mutation p.R143C 0.10 tolerated(0.1) possibly_damaging(0.901) TCGA-QK-A6IG-01 20 34205117 34205117 C G SPAG4 Missense_Mutation p.L122V 0.20 tolerated(0.07) benign(0.017) TCGA-QK-A6IG-01 20 39801217 39801217 C G PLCG1 Missense_Mutation p.S1021C 0.20 deleterious(0) probably_damaging(1) TCGA-QK-A6IG-01 20 60737907 60737907 C T SS18L1 Missense_Mutation p.S159L 0.37 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-QK-A6IG-01 20 62421836 62421836 G C ZBTB46 Nonsense_Mutation p.S92* 0.16 TCGA-QK-A6IG-01 20 8696840 8696840 C T PLCB1 Intron 0.14 TCGA-QK-A6IG-01 20 9388585 9388585 G A PLCB4 Missense_Mutation p.E545K 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-QK-A6IG-01 22 20074700 20074700 G T DGCR8 Missense_Mutation p.D246Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IG-01 22 30127364 30127364 G A CABP7 3'UTR 0.23 TCGA-QK-A6IG-01 22 31266577 31266577 G A OSBP2 Missense_Mutation p.G339S 0.10 tolerated(1) benign(0.002) TCGA-QK-A6IG-01 22 39124110 39124110 G C GTPBP1 Missense_Mutation p.D554H 0.14 deleterious(0) probably_damaging(0.951) TCGA-QK-A6IG-01 22 41525914 41525914 C T EP300 Nonsense_Mutation p.R397* 0.40 TCGA-QK-A6IG-01 22 50598162 50598162 G C MOV10L1 Missense_Mutation p.G1091A 0.23 deleterious(0) probably_damaging(1) TCGA-QK-A6IG-01 2 131796456 131796456 G A ARHGEF4 Missense_Mutation p.E200K 0.17 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IG-01 2 152574009 152574009 T C NEB Missense_Mutation p.E248G 0.09 probably_damaging(1) TCGA-QK-A6IG-01 2 202150039 202150039 C T CASP8 Nonsense_Mutation p.R494* 0.42 TCGA-QK-A6IG-01 2 27454980 27454980 G A CAD Missense_Mutation p.A845T 0.15 tolerated(0.2) benign(0.001) TCGA-QK-A6IG-01 2 28825739 28825739 C T PLB1 Missense_Mutation p.R909W 0.14 deleterious(0.01) benign(0.347) TCGA-QK-A6IG-01 2 29092577 29092577 G T TRMT61B Missense_Mutation p.F189L 0.36 tolerated(0.16) possibly_damaging(0.676) TCGA-QK-A6IG-01 2 40397466 40397466 G A SLC8A1 Missense_Mutation p.H665Y 0.30 tolerated(0.13) benign(0) TCGA-QK-A6IG-01 3 100963365 100963365 C A IMPG2 Missense_Mutation p.G604W 0.15 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IG-01 3 159610009 159610009 G A IQCJ-SCHIP1 Intron 0.38 TCGA-QK-A6IG-01 3 186256601 186256601 C T CRYGS Missense_Mutation p.E141K 0.21 deleterious(0.01) possibly_damaging(0.804) TCGA-QK-A6IG-01 3 38592386 38592386 C T SCN5A Missense_Mutation p.R1826H 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-QK-A6IG-01 3 42781263 42781263 C T CCDC13 Missense_Mutation p.E343K 0.13 tolerated(0.07) benign(0.416) TCGA-QK-A6IG-01 3 46539522 46539522 C G RTP3 5'UTR 0.08 TCGA-QK-A6IG-01 4 120169904 120169904 C T USP53 Missense_Mutation p.T80M 0.41 deleterious(0.01) probably_damaging(0.954) TCGA-QK-A6IG-01 4 138442219 138442219 C A PCDH18 Missense_Mutation p.E1124D 0.41 tolerated(0.07) probably_damaging(0.996) TCGA-QK-A6IG-01 4 73175219 73175219 C G ADAMTS3 Missense_Mutation p.E692Q 0.19 tolerated(0.2) benign(0.235) TCGA-QK-A6IG-01 5 137626346 137626346 C G CDC25C Silent p.L282L 0.32 TCGA-QK-A6IG-01 5 90040955 90040955 G A GPR98 Missense_Mutation p.A3548T 0.42 possibly_damaging(0.811) TCGA-QK-A6IG-01 6 10415155 10415155 G C TFAP2A Intron 0.18 TCGA-QK-A6IG-01 6 117704527 117704527 C T ROS1 Missense_Mutation p.E817K 0.18 tolerated(0.12) probably_damaging(0.963) TCGA-QK-A6IG-01 6 119611873 119611873 G C MAN1A1 Nonsense_Mutation p.S291* 0.11 TCGA-QK-A6IG-01 6 127796884 127796884 C T SOGA3 Missense_Mutation p.D763N 0.19 deleterious(0) probably_damaging(0.957) TCGA-QK-A6IG-01 6 142399868 142399868 T C NMBR Missense_Mutation p.I199V 0.49 tolerated(1) benign(0.014) TCGA-QK-A6IG-01 6 151766915 151766915 C A RMND1 Missense_Mutation p.R11I 0.10 tolerated_low_confidence(0.16) benign(0.044) TCGA-QK-A6IG-01 6 26388400 26388400 C T BTN2A2 Missense_Mutation p.A201V 0.21 tolerated(0.13) benign(0.371) TCGA-QK-A6IG-01 6 3113558 3113558 C T RIPK1 Silent p.Y667Y 0.06 TCGA-QK-A6IG-01 6 31864575 31864575 G A EHMT2 Missense_Mutation p.R46C 0.15 tolerated_low_confidence(0.06) benign(0.064) TCGA-QK-A6IG-01 6 56482903 56482904 - AATG DST Intron 0.16 TCGA-QK-A6IG-01 6 56505363 56505363 C A DST Nonsense_Mutation p.E153* 0.44 TCGA-QK-A6IG-01 6 74079426 74079426 C T OOEP Silent p.P30P 0.54 TCGA-QK-A6IG-01 6 75865511 75865511 G A COL12A1 Nonsense_Mutation p.R1104* 0.12 TCGA-QK-A6IG-01 7 102553619 102553619 G A FBXL13 Missense_Mutation p.R308W 0.31 deleterious(0) possibly_damaging(0.846) TCGA-QK-A6IG-01 7 129110495 129110495 C A STRIP2 Nonsense_Mutation p.S628* 0.19 TCGA-QK-A6IG-01 7 1538159 1538159 C T INTS1 Silent p.L438L 0.11 TCGA-QK-A6IG-01 7 18684345 18684345 C T HDAC9 Silent p.L322L 0.43 TCGA-QK-A6IG-01 7 42079725 42079725 G A GLI3 Missense_Mutation p.P314S 0.54 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IG-01 7 42088212 42088212 G A GLI3 Missense_Mutation p.S186F 0.12 deleterious(0.02) possibly_damaging(0.748) TCGA-QK-A6IG-01 7 91690634 91690634 G C AKAP9 Missense_Mutation p.E1888Q 0.23 benign(0.336) TCGA-QK-A6IG-01 7 95166913 95166913 A T ASB4 Missense_Mutation p.T375S 0.33 tolerated(0.5) benign(0) TCGA-QK-A6IG-01 8 110655250 110655250 G C SYBU Intron 0.16 TCGA-QK-A6IG-01 8 125516547 125516547 C G TATDN1 Missense_Mutation p.L186F 0.16 tolerated(0.12) benign(0.025) TCGA-QK-A6IG-01 8 145534902 145534902 G C HSF1 Missense_Mutation p.Q177H 0.07 deleterious(0) possibly_damaging(0.573) TCGA-QK-A6IG-01 8 145781002 145781002 C G ARHGAP39 Missense_Mutation p.E180Q 0.27 tolerated(0.2) benign(0.398) TCGA-QK-A6IG-01 8 21965792 21965792 C T NUDT18 Silent p.G76G 0.17 TCGA-QK-A6IG-01 8 48805814 48805814 G A PRKDC Missense_Mutation p.R1244W 0.21 possibly_damaging(0.764) TCGA-QK-A6IG-01 8 55534103 55534103 C T RP1 Missense_Mutation p.R193C 0.14 tolerated(0.22) benign(0.006) TCGA-QK-A6IG-01 8 61192399 61192399 T C CA8 Silent p.E47E 0.18 TCGA-QK-A6IG-01 8 91072389 91072389 C T CALB1 3'UTR 0.13 TCGA-QK-A6IG-01 9 135946421 135946421 A G CEL Missense_Mutation p.Y514C 0.12 deleterious(0) probably_damaging(1) TCGA-QK-A6IG-01 9 138377643 138377643 G A PPP1R26 Silent p.V429V 0.32 TCGA-QK-A6IG-01 9 138714833 138714833 C T CAMSAP1 Silent p.E558E 0.32 TCGA-QK-A6IG-01 9 139369942 139369942 G C SEC16A Nonsense_Mutation p.S709* 0.08 TCGA-QK-A6IG-01 9 140510167 140510167 G C C9orf37 Nonsense_Mutation p.S162* 0.15 TCGA-QK-A6IG-01 9 21227789 21227789 C T IFNA17 Silent p.G128G 0.73 TCGA-QK-A6IG-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.66 TCGA-QK-A6IG-01 9 43737512 43737512 A C CNTNAP3B Missense_Mutation p.S128R 0.12 deleterious(0.03) probably_damaging(0.949) TCGA-QK-A6IG-01 9 80879159 80879159 G C CEP78 Missense_Mutation p.E519Q 0.11 deleterious(0) probably_damaging(0.994) TCGA-QK-A6IG-01 9 84607776 84607776 G C SPATA31D1 Silent p.L797L 0.16 TCGA-QK-A6IG-01 X 123514622 123514622 C A TENM1 Nonsense_Mutation p.E2655* 0.60 TCGA-QK-A6IG-01 X 129060290 129060290 G A UTP14A Missense_Mutation p.R673H 0.07 deleterious(0.01) benign(0.23) TCGA-QK-A6IG-01 X 51487158 51487158 C G GSPT2 Missense_Mutation p.L146V 0.75 tolerated(0.66) benign(0.001) TCGA-QK-A6IG-01 X 70617222 70617222 G C TAF1 Missense_Mutation p.E1196Q 0.26 tolerated(0.06) benign(0.124) TCGA-QK-A6IG-01 X 83390119 83390119 G A RPS6KA6 Missense_Mutation p.P201S 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-QK-A6IH-01 10 13213057 13213057 C T MCM10 Missense_Mutation p.A48V 0.04 deleterious_low_confidence(0.02) probably_damaging(0.917) TCGA-QK-A6IH-01 10 90528636 90528636 C T LIPN Missense_Mutation p.P208L 0.50 tolerated(0.08) probably_damaging(0.995) TCGA-QK-A6IH-01 10 96745813 96745813 G C CYP2C9 Silent p.L391L 0.09 TCGA-QK-A6IH-01 11 49598177 49598177 T C RP11-707M1.1 RNA 0.33 TCGA-QK-A6IH-01 11 55563188 55563188 A G OR5D14 Missense_Mutation p.I53V 0.24 tolerated(0.36) benign(0.005) TCGA-QK-A6IH-01 11 66062449 66062449 C T TMEM151A Silent p.S244S 0.28 TCGA-QK-A6IH-01 11 6645063 6645063 G A DCHS1 Missense_Mutation p.T2615I 0.18 deleterious(0.05) benign(0.13) TCGA-QK-A6IH-01 12 120221731 120221731 G C CIT Missense_Mutation p.T509S 0.04 tolerated(0.07) benign(0.129) TCGA-QK-A6IH-01 13 50108173 50108173 G A RCBTB1 3'UTR 0.62 TCGA-QK-A6IH-01 13 52684525 52684525 C T NEK5 Missense_Mutation p.G140R 0.45 deleterious(0) probably_damaging(0.998) TCGA-QK-A6IH-01 14 21967215 21967215 G A METTL3 Missense_Mutation p.R529C 0.46 deleterious(0) probably_damaging(1) TCGA-QK-A6IH-01 15 40913774 40913774 G A CASC5 Missense_Mutation p.E464K 0.39 deleterious(0) probably_damaging(0.94) TCGA-QK-A6IH-01 15 53889440 53889440 G A WDR72 Missense_Mutation p.A995V 0.31 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IH-01 15 74704320 74704320 C T SEMA7A Missense_Mutation p.G443E 0.41 tolerated(0.63) benign(0.004) TCGA-QK-A6IH-01 15 75305126 75305126 G A SCAMP5 Missense_Mutation p.R39H 0.36 tolerated(0.11) probably_damaging(0.952) TCGA-QK-A6IH-01 15 92671628 92671628 A C SLCO3A1 Missense_Mutation p.N474T 0.17 tolerated(0.09) benign(0.186) TCGA-QK-A6IH-01 16 67650756 67650756 C T CTCF Missense_Mutation p.S354F 0.38 deleterious(0) benign(0.04) TCGA-QK-A6IH-01 17 32959825 32959825 G A TMEM132E Missense_Mutation p.E439K 0.40 deleterious(0.02) probably_damaging(0.982) TCGA-QK-A6IH-01 17 7578508 7578508 C T TP53 Missense_Mutation p.C141Y 0.61 deleterious(0) probably_damaging(1) TCGA-QK-A6IH-01 17 79826815 79826815 G C ARHGDIA Missense_Mutation p.D184E 0.31 deleterious(0) probably_damaging(0.959) TCGA-QK-A6IH-01 18 29793102 29793102 C T MEP1B Missense_Mutation p.L387F 0.49 deleterious(0) probably_damaging(1) TCGA-QK-A6IH-01 19 10270532 10270532 G A DNMT1 Missense_Mutation p.H386Y 0.03 tolerated(0.94) benign(0.361) TCGA-QK-A6IH-01 19 11231182 11231182 G A LDLR Missense_Mutation p.M708I 0.43 deleterious(0.02) possibly_damaging(0.457) TCGA-QK-A6IH-01 19 21990749 21990749 T C ZNF43 Missense_Mutation p.K697R 0.31 tolerated(0.2) probably_damaging(0.973) TCGA-QK-A6IH-01 19 35842837 35842837 C T FFAR1 Missense_Mutation p.A128V 0.51 tolerated(1) benign(0.004) TCGA-QK-A6IH-01 19 36572337 36572337 G A WDR62 Silent p.V412V 0.49 TCGA-QK-A6IH-01 19 46915423 46915423 C G CCDC8 Silent p.P215P 0.33 TCGA-QK-A6IH-01 19 49110400 49110400 G T SPACA4 Silent p.P55P 0.32 TCGA-QK-A6IH-01 1 110051072 110051072 C T AMIGO1 Missense_Mutation p.D155N 0.40 tolerated(0.4) benign(0.033) TCGA-QK-A6IH-01 1 149916210 149916210 G C OTUD7B Missense_Mutation p.P693R 0.67 deleterious_low_confidence(0.02) benign(0.043) TCGA-QK-A6IH-01 1 174979205 174979205 C T CACYBP Missense_Mutation p.T226M 0.26 tolerated(0.25) benign(0.001) TCGA-QK-A6IH-01 1 202742292 202742292 C T KDM5B Missense_Mutation p.R177Q 0.27 deleterious(0) probably_damaging(0.968) TCGA-QK-A6IH-01 1 227149148 227149148 C T ADCK3 Missense_Mutation p.A21V 0.77 deleterious_low_confidence(0.03) benign(0.035) TCGA-QK-A6IH-01 1 237777572 237777572 C T RYR2 Missense_Mutation p.A1715V 0.08 benign(0.114) TCGA-QK-A6IH-01 1 247769658 247769658 C T OR2G3 Silent p.Y257Y 0.65 TCGA-QK-A6IH-01 1 79107493 79107493 G C IFI44L Nonstop_Mutation p.*453Sext*5 0.34 TCGA-QK-A6IH-01 1 89735197 89735197 G C GBP5 Missense_Mutation p.I14M 0.27 deleterious(0) probably_damaging(0.972) TCGA-QK-A6IH-01 20 3845128 3845128 C T MAVS Missense_Mutation p.S284F 0.32 deleterious(0.03) benign(0.03) TCGA-QK-A6IH-01 21 40181971 40181971 G A ETS2 Missense_Mutation p.G5R 0.18 tolerated_low_confidence(0.13) possibly_damaging(0.751) TCGA-QK-A6IH-01 22 26769434 26769434 G C SEZ6L Missense_Mutation p.E938Q 0.18 tolerated(0.13) benign(0.099) TCGA-QK-A6IH-01 22 37272079 37272079 C T NCF4 Missense_Mutation p.R338W 0.40 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-QK-A6IH-01 22 38710135 38710135 G A CSNK1E Missense_Mutation p.R10C 0.52 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-QK-A6IH-01 2 103321010 103321010 C T SLC9A2 Missense_Mutation p.S618F 0.25 deleterious(0) probably_damaging(0.998) TCGA-QK-A6IH-01 2 168100817 168100817 C A XIRP2 Missense_Mutation p.T972K 0.86 benign(0.066) TCGA-QK-A6IH-01 2 242265484 242265484 G A SEPT2 Missense_Mutation p.R29Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IH-01 2 27448088 27448088 G A CAD Missense_Mutation p.E533K 0.22 tolerated(0.55) benign(0.005) TCGA-QK-A6IH-01 2 27680574 27680574 C T IFT172 Missense_Mutation p.E1054K 0.41 tolerated(0.32) benign(0.092) TCGA-QK-A6IH-01 2 86831499 86831499 T C RNF103 Missense_Mutation p.I509V 0.37 tolerated(0.11) possibly_damaging(0.472) TCGA-QK-A6IH-01 3 137843680 137843680 G A A4GNT Missense_Mutation p.S150L 0.43 deleterious(0) probably_damaging(0.996) TCGA-QK-A6IH-01 3 151046793 151046793 C T P2RY13 Silent p.V17V 0.35 TCGA-QK-A6IH-01 3 185332487 185332487 G C SENP2 Missense_Mutation p.E357Q 0.33 deleterious(0.04) possibly_damaging(0.46) TCGA-QK-A6IH-01 3 3887743 3887743 C T LRRN1 Missense_Mutation p.S473L 0.53 deleterious(0.02) benign(0.302) TCGA-QK-A6IH-01 3 48719141 48719141 T A NCKIPSD Missense_Mutation p.D224V 0.67 deleterious(0.01) probably_damaging(0.997) TCGA-QK-A6IH-01 3 58062871 58062871 G T FLNB Nonsense_Mutation p.E131* 0.70 TCGA-QK-A6IH-01 4 25849151 25849151 G T SEL1L3 Silent p.I166I 0.43 TCGA-QK-A6IH-01 4 48490503 48490503 G A SLC10A4 Missense_Mutation p.M287I 0.39 tolerated(0.46) probably_damaging(0.91) TCGA-QK-A6IH-01 4 71522211 71522211 T A IGJ Silent p.I105I 0.32 TCGA-QK-A6IH-01 4 77661336 77661336 G C SHROOM3 Missense_Mutation p.E670D 0.39 tolerated(0.08) benign(0.018) TCGA-QK-A6IH-01 4 96091364 96091364 A T UNC5C Missense_Mutation p.D857E 0.37 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IH-01 5 96503372 96503372 G T RIOK2 Missense_Mutation p.A399D 0.71 tolerated(0.15) benign(0.022) TCGA-QK-A6IH-01 6 114262884 114262885 - T HDAC2 Frame_Shift_Ins p.T475Nfs*27 0.32 TCGA-QK-A6IH-01 6 130376371 130376371 G C L3MBTL3 Missense_Mutation p.R213T 0.18 tolerated(0.09) probably_damaging(0.996) TCGA-QK-A6IH-01 6 146351241 146351241 T C GRM1 Silent p.T196T 0.38 TCGA-QK-A6IH-01 6 26197480 26197480 G A HIST1H3D 5'UTR 0.40 TCGA-QK-A6IH-01 6 26463495 26463495 T C BTN2A1 Missense_Mutation p.S152P 0.34 deleterious(0.01) benign(0.005) TCGA-QK-A6IH-01 6 33283609 33283609 C T ZBTB22 Missense_Mutation p.R362H 0.43 deleterious(0) probably_damaging(0.996) TCGA-QK-A6IH-01 6 76572371 76572371 T G MYO6 Silent p.L535L 0.66 TCGA-QK-A6IH-01 6 79655040 79655040 T G PHIP Missense_Mutation p.K1602T 0.34 tolerated_low_confidence(0.24) benign(0.017) TCGA-QK-A6IH-01 6 88119576 88119576 G A C6ORF165 Missense_Mutation p.E7K 0.34 deleterious(0) probably_damaging(0.988) TCGA-QK-A6IH-01 7 138969205 138969205 G T UBN2 Missense_Mutation p.R1185M 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-QK-A6IH-01 7 19184842 19184842 C G FERD3L Missense_Mutation p.E48D 0.64 tolerated(0.24) benign(0.005) TCGA-QK-A6IH-01 7 8791292 8791292 G A NXPH1 Missense_Mutation p.V237M 0.50 deleterious(0) probably_damaging(0.996) TCGA-QK-A6IH-01 7 99308496 99308496 G C CYP3A7 Silent p.L295L 0.35 TCGA-QK-A6IH-01 8 125033801 125033801 C T FER1L6 Silent p.C675C 0.17 TCGA-QK-A6IH-01 8 132052295 132052295 G A ADCY8 Silent p.G95G 0.33 TCGA-QK-A6IH-01 8 145559793 145559793 G A SCRT1 Silent p.D13D 0.18 TCGA-QK-A6IH-01 8 25226143 25226143 C G DOCK5 Missense_Mutation p.L1114V 0.57 deleterious(0) possibly_damaging(0.467) TCGA-QK-A6IH-01 8 2966208 2966208 G A CSMD1 Missense_Mutation p.T2224M 0.59 probably_damaging(0.969) TCGA-QK-A6IH-01 8 90937310 90937310 C G OSGIN2 Silent p.V400V 0.25 TCGA-QK-A6IH-01 9 33290540 33290540 G A NFX1 5'UTR 0.07 TCGA-QK-A6IH-01 9 90321664 90321664 G A DAPK1 Silent p.T1226T 0.23 TCGA-QK-A6IH-01 X 1712669 1712669 G C AKAP17A Missense_Mutation p.G105A 0.38 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IH-01 X 41203625 41203625 G C DDX3X Missense_Mutation p.R333T 0.56 deleterious(0) probably_damaging(0.997) TCGA-QK-A6IH-01 X 96197014 96197014 C T DIAPH2 Intron 0.52 TCGA-QK-A6II-01 10 13251295 13251295 G C MCM10 Silent p.L871L 0.16 TCGA-QK-A6II-01 10 35814905 35814905 A T CCNY Missense_Mutation p.I127L 0.36 deleterious(0) benign(0.129) TCGA-QK-A6II-01 10 43127881 43127881 G A ZNF33B Nonsense_Mutation p.Q6* 0.14 TCGA-QK-A6II-01 10 5784161 5784161 C T FAM208B Missense_Mutation p.S810F 0.24 deleterious(0) probably_damaging(0.993) TCGA-QK-A6II-01 10 65225436 65225436 G T JMJD1C 5'UTR 0.26 TCGA-QK-A6II-01 10 6525470 6525470 G C PRKCQ Missense_Mutation p.L371V 0.25 tolerated(0.33) benign(0.001) TCGA-QK-A6II-01 10 70482261 70482261 C G CCAR1 5'UTR 0.27 TCGA-QK-A6II-01 10 75407449 75407449 G A SYNPO2L Missense_Mutation p.S654L 0.19 deleterious(0) probably_damaging(0.99) TCGA-QK-A6II-01 10 76995480 76995480 C T COMTD1 Missense_Mutation p.R39Q 0.46 tolerated(0.64) benign(0.005) TCGA-QK-A6II-01 10 95169470 95169470 C T MYOF Missense_Mutation p.E154K 0.24 tolerated(0.11) benign(0.04) TCGA-QK-A6II-01 11 10823638 10823638 T C EIF4G2 Silent p.Q419Q 0.22 TCGA-QK-A6II-01 11 110456955 110456955 A C ARHGAP20 Missense_Mutation p.I467R 0.39 deleterious(0) probably_damaging(0.987) TCGA-QK-A6II-01 11 117870365 117870365 G C IL10RA 3'UTR 0.38 TCGA-QK-A6II-01 11 122848402 122848402 G A BSX Silent p.D219D 0.31 TCGA-QK-A6II-01 11 126215347 126215347 T A DCPS Missense_Mutation p.F285I 0.25 deleterious(0.01) possibly_damaging(0.493) TCGA-QK-A6II-01 11 4936814 4936814 C T OR51G2 Missense_Mutation p.R27H 0.25 tolerated(0.27) benign(0) TCGA-QK-A6II-01 11 62294399 62294399 T C AHNAK Missense_Mutation p.N2497S 0.29 possibly_damaging(0.486) TCGA-QK-A6II-01 11 62384631 62384631 T C B3GAT3 Missense_Mutation p.E149G 0.37 deleterious(0) benign(0.005) TCGA-QK-A6II-01 11 62520755 62520755 C T ZBTB3 Missense_Mutation p.D178N 0.25 deleterious(0) probably_damaging(0.989) TCGA-QK-A6II-01 11 62521034 62521034 A G ZBTB3 Missense_Mutation p.F85L 0.29 deleterious(0) probably_damaging(1) TCGA-QK-A6II-01 11 7982199 7982199 C T NLRP10 Silent p.R320R 0.28 TCGA-QK-A6II-01 11 82868428 82868428 C G PCF11 5'UTR 0.25 TCGA-QK-A6II-01 12 107245283 107245283 G C RIC8B Missense_Mutation p.R406T 0.37 deleterious(0) probably_damaging(0.999) TCGA-QK-A6II-01 12 109937499 109937499 C T UBE3B Silent p.F334F 0.27 TCGA-QK-A6II-01 12 110463544 110463544 C G ANKRD13A Intron 0.27 TCGA-QK-A6II-01 12 112227669 112227669 C A ALDH2 Silent p.I161I 0.23 TCGA-QK-A6II-01 12 112471054 112471054 C G NAA25 Missense_Mutation p.D927H 0.32 deleterious(0.03) benign(0.245) TCGA-QK-A6II-01 12 114352855 114352855 G A RBM19 Missense_Mutation p.P826L 0.24 tolerated(0.33) benign(0.001) TCGA-QK-A6II-01 12 124335581 124335581 C T DNAH10 Silent p.I1965I 0.20 TCGA-QK-A6II-01 12 49220822 49220822 C T CACNB3 Silent p.Y352Y 0.27 TCGA-QK-A6II-01 12 52695816 52695816 G A KRT86 Missense_Mutation p.R39H 0.27 tolerated(0.06) probably_damaging(0.991) TCGA-QK-A6II-01 12 6103627 6103627 C A VWF Silent p.L2070L 0.30 TCGA-QK-A6II-01 12 70004271 70004271 C G LRRC10 Missense_Mutation p.E116D 0.25 tolerated(0.18) probably_damaging(0.999) TCGA-QK-A6II-01 12 72425365 72425365 G A TPH2 Missense_Mutation p.E455K 0.27 deleterious(0) possibly_damaging(0.738) TCGA-QK-A6II-01 13 28840936 28840936 A T PAN3 Missense_Mutation p.N499I 0.31 tolerated(0.21) possibly_damaging(0.823) TCGA-QK-A6II-01 13 36686199 36686199 C T DCLK1 Missense_Mutation p.R177Q 0.29 tolerated(0.22) unknown(0) TCGA-QK-A6II-01 13 52034950 52034950 G A RPS4XP16 RNA 0.12 TCGA-QK-A6II-01 13 84455565 84455565 C G SLITRK1 Missense_Mutation p.E26D 0.30 tolerated(0.56) benign(0.017) TCGA-QK-A6II-01 14 22631651 22631651 T G TRAV29DV5 Missense_Mutation p.D81E 0.22 tolerated(0.87) benign(0.02) TCGA-QK-A6II-01 14 23523379 23523379 C T CDH24 Missense_Mutation p.G315S 0.31 tolerated(0.09) probably_damaging(1) TCGA-QK-A6II-01 14 31581693 31581693 G T HECTD1 Missense_Mutation p.S2069R 0.38 tolerated(0.68) benign(0.282) TCGA-QK-A6II-01 14 33684434 33684434 C T NPAS3 Missense_Mutation p.R63C 0.20 deleterious(0) possibly_damaging(0.689) TCGA-QK-A6II-01 14 65271665 65271665 C G SPTB Missense_Mutation p.E98Q 0.34 deleterious(0) possibly_damaging(0.886) TCGA-QK-A6II-01 15 22926026 22926026 C T CYFIP1 Silent p.I56I 0.27 TCGA-QK-A6II-01 15 25327844 25327844 C T SNORD116-18 5'Flank 0.41 TCGA-QK-A6II-01 15 39892971 39892971 C G FSIP1 3'UTR 0.25 TCGA-QK-A6II-01 15 40916382 40916382 A T CASC5 Missense_Mutation p.N1333I 0.27 deleterious(0) probably_damaging(0.914) TCGA-QK-A6II-01 15 45007745 45007745 G C B2M Missense_Mutation p.E64D 0.25 tolerated(0.1) benign(0.008) TCGA-QK-A6II-01 15 64380932 64380932 G A FAM96A Silent p.I81I 0.18 TCGA-QK-A6II-01 15 86813226 86813226 G A AGBL1 Missense_Mutation p.G593S 0.29 deleterious(0.03) benign(0.243) TCGA-QK-A6II-01 16 14973923 14973923 C T NOMO1 Missense_Mutation p.P937S 0.40 deleterious(0) probably_damaging(1) TCGA-QK-A6II-01 16 1735475 1735475 T G HN1L Missense_Mutation p.L27R 0.44 deleterious(0.01) possibly_damaging(0.857) TCGA-QK-A6II-01 16 30123725 30123725 C G GDPD3 Missense_Mutation p.D129H 0.48 deleterious(0) probably_damaging(1) TCGA-QK-A6II-01 16 31212881 31212881 A T PYCARD 3'UTR 0.46 TCGA-QK-A6II-01 16 69358222 69358222 C T VPS4A 3'UTR 0.20 TCGA-QK-A6II-01 16 69726976 69726985 CTCATTCACA - NFAT5 Frame_Shift_Del p.S1083Wfs*80 0.27 TCGA-QK-A6II-01 16 83948911 83948911 C G MLYCD Missense_Mutation p.I433M 0.26 deleterious(0.01) possibly_damaging(0.7) TCGA-QK-A6II-01 17 1703375 1703375 T C SMYD4 Missense_Mutation p.E438G 0.23 deleterious(0.04) benign(0.33) TCGA-QK-A6II-01 17 25631813 25631813 C A WSB1 Silent p.L162L 0.30 TCGA-QK-A6II-01 17 35580468 35580468 G C ACACA Missense_Mutation p.H1177D 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-QK-A6II-01 17 40453425 40453425 C T STAT5A Silent p.I374I 0.33 TCGA-QK-A6II-01 17 43348459 43348459 C T MAP3K14-AS1 3'Flank 0.32 TCGA-QK-A6II-01 17 44248549 44248549 G A KANSL1 Silent p.L321L 0.21 TCGA-QK-A6II-01 17 46655222 46655222 C G HOXB4 Intron 0.30 TCGA-QK-A6II-01 17 62796462 62796462 T C PLEKHM1P RNA 0.20 TCGA-QK-A6II-01 17 7291834 7291835 - G TNK1 Frame_Shift_Ins p.L536Pfs*10 0.23 TCGA-QK-A6II-01 17 73664664 73664664 G C SAP30BP Missense_Mutation p.D59H 0.29 deleterious_low_confidence(0) benign(0.309) TCGA-QK-A6II-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.50 deleterious(0) probably_damaging(0.999) TCGA-QK-A6II-01 17 8131545 8131545 C G CTC1 Missense_Mutation p.E1203Q 0.30 deleterious(0) probably_damaging(0.977) TCGA-QK-A6II-01 18 40854064 40854064 G C SYT4 Silent p.L110L 0.21 TCGA-QK-A6II-01 18 48723007 48723007 C G MEX3C Missense_Mutation p.K228N 0.36 deleterious(0) possibly_damaging(0.811) TCGA-QK-A6II-01 18 50734082 50734082 G A DCC Missense_Mutation p.E586K 0.32 tolerated(0.45) benign(0.438) TCGA-QK-A6II-01 19 10897294 10897294 A T DNM2 Missense_Mutation p.S302C 0.28 deleterious(0) possibly_damaging(0.881) TCGA-QK-A6II-01 19 11545874 11545874 G C CCDC151 5'UTR 0.24 TCGA-QK-A6II-01 19 13246121 13246121 G C NACC1 Missense_Mutation p.V34L 0.15 deleterious(0.05) benign(0.432) TCGA-QK-A6II-01 19 19217186 19217186 G A SLC25A42 Silent p.P163P 0.30 TCGA-QK-A6II-01 19 1979345 1979345 A C CSNK1G2 Missense_Mutation p.K266Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-QK-A6II-01 19 20728308 20728308 C T ZNF737 Missense_Mutation p.C234Y 0.22 deleterious(0.02) probably_damaging(1) TCGA-QK-A6II-01 19 23543545 23543545 C T ZNF91 Missense_Mutation p.E746K 0.23 tolerated(0.07) probably_damaging(0.995) TCGA-QK-A6II-01 19 30101537 30101537 G A POP4 Silent p.Q94Q 0.29 TCGA-QK-A6II-01 19 44419217 44419217 T C ZNF45 Missense_Mutation p.N124S 0.25 tolerated(0.11) benign(0.003) TCGA-QK-A6II-01 19 44832582 44832582 T A ZNF112 Missense_Mutation p.K582N 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-QK-A6II-01 19 46973715 46973715 C T PNMAL1 Missense_Mutation p.G193E 0.20 tolerated(0.07) benign(0) TCGA-QK-A6II-01 19 57175283 57175283 G A ZNF835 Silent p.S428S 0.23 TCGA-QK-A6II-01 1 109730882 109730882 G C KIAA1324 Silent p.V375V 0.22 TCGA-QK-A6II-01 1 113238804 113238804 A T MOV10 Missense_Mutation p.Y605F 0.26 tolerated(0.52) benign(0.001) TCGA-QK-A6II-01 1 144879176 144879176 C T PDE4DIP Missense_Mutation p.G1425E 0.07 deleterious(0.05) probably_damaging(1) TCGA-QK-A6II-01 1 145273377 145273377 G C NOTCH2NL Silent p.L77L 0.07 TCGA-QK-A6II-01 1 145293465 145293465 C T NBPF10 Silent p.I20I 0.05 TCGA-QK-A6II-01 1 150676644 150676644 C T HORMAD1 Missense_Mutation p.E300K 0.44 tolerated(0.14) benign(0.027) TCGA-QK-A6II-01 1 167798634 167798634 C T ADCY10 Silent p.R1207R 0.05 TCGA-QK-A6II-01 1 167874422 167874422 C G ADCY10 5'UTR 0.31 TCGA-QK-A6II-01 1 183774408 183774408 C T RGL1 Intron 0.14 TCGA-QK-A6II-01 1 204393850 204393850 G C PIK3C2B 3'UTR 0.28 TCGA-QK-A6II-01 1 212118259 212118259 T C INTS7 Missense_Mutation p.N823S 0.30 tolerated(0.81) benign(0) TCGA-QK-A6II-01 1 214169881 214169881 G T PROX1 Translation_Start_Site p.M1? 0.24 tolerated_low_confidence(0.06) probably_damaging(0.914) TCGA-QK-A6II-01 1 231489080 231489080 C G SPRTN Missense_Mutation p.I481M 0.22 deleterious_low_confidence(0.05) benign(0.012) TCGA-QK-A6II-01 1 233802462 233802462 C T KCNK1 Silent p.H159H 0.25 TCGA-QK-A6II-01 1 237617746 237617746 G C RYR2 Missense_Mutation p.E450Q 0.26 benign(0.047) TCGA-QK-A6II-01 1 247202158 247202158 C G ZNF670 Missense_Mutation p.D49H 0.28 deleterious(0.01) possibly_damaging(0.633) TCGA-QK-A6II-01 1 28354392 28354392 G T EYA3 Missense_Mutation p.T136N 0.31 deleterious(0.01) possibly_damaging(0.858) TCGA-QK-A6II-01 1 33956919 33956919 G T ZSCAN20 Missense_Mutation p.R354L 0.26 deleterious(0.05) probably_damaging(1) TCGA-QK-A6II-01 1 35579776 35579776 G C ZMYM1 Missense_Mutation p.G782A 0.13 tolerated(0.06) possibly_damaging(0.459) TCGA-QK-A6II-01 1 35580247 35580247 G A ZMYM1 Missense_Mutation p.R939K 0.16 tolerated(0.13) benign(0.261) TCGA-QK-A6II-01 1 3753141 3753141 C T CEP104 Missense_Mutation p.G412D 0.27 tolerated(0.15) benign(0.007) TCGA-QK-A6II-01 1 45808314 45808314 T C TOE1 Missense_Mutation p.C251R 0.25 deleterious(0.04) possibly_damaging(0.775) TCGA-QK-A6II-01 1 46206694 46206694 G C IPP Missense_Mutation p.F201L 0.26 tolerated(0.13) benign(0.143) TCGA-QK-A6II-01 20 32217648 32217648 G C CBFA2T2 Missense_Mutation p.E395Q 0.23 tolerated(0.1) benign(0.3) TCGA-QK-A6II-01 20 33868521 33868521 G A EIF6 Missense_Mutation p.S102L 0.33 deleterious(0) probably_damaging(0.992) TCGA-QK-A6II-01 20 3528031 3528031 G A ATRN Missense_Mutation p.E280K 0.18 deleterious(0.04) benign(0.15) TCGA-QK-A6II-01 20 35444093 35444093 G A SOGA1 Silent p.S584S 0.21 TCGA-QK-A6II-01 20 42089617 42089619 CCT - SRSF6 In_Frame_Del p.P319del 0.19 TCGA-QK-A6II-01 20 42574639 42574651 TGCAAGACACTGG - TOX2 Intron 0.23 TCGA-QK-A6II-01 20 46307421 46307421 G T SULF2 Silent p.R398R 0.26 TCGA-QK-A6II-01 21 32253775 32253775 C T KRTAP11-1 Silent p.V23V 0.25 TCGA-QK-A6II-01 21 34861415 34861415 C G DNAJC28 Missense_Mutation p.E96Q 0.23 tolerated(0.13) possibly_damaging(0.777) TCGA-QK-A6II-01 21 43412147 43412147 C A ZBTB21 Missense_Mutation p.K686N 0.24 deleterious(0) probably_damaging(0.99) TCGA-QK-A6II-01 21 47863722 47863722 G C PCNT Splice_Site p.X3234_splice 0.19 TCGA-QK-A6II-01 22 19511491 19511491 G A CLDN5 Silent p.F181F 0.38 TCGA-QK-A6II-01 22 30077427 30077427 G A NF2 Splice_Site p.X525_splice 0.60 TCGA-QK-A6II-01 22 36003339 36003339 G C MB 3'UTR 0.60 TCGA-QK-A6II-01 2 144381701 144381701 G A ARHGAP15 Splice_Site p.X335_splice 0.26 TCGA-QK-A6II-01 2 161029180 161029180 G A ITGB6 Missense_Mutation p.S274F 0.29 tolerated(0.13) probably_damaging(1) TCGA-QK-A6II-01 2 177017499 177017499 G C HOXD4 Missense_Mutation p.K199N 0.18 deleterious(0) probably_damaging(1) TCGA-QK-A6II-01 2 179587808 179587808 C T TTN Missense_Mutation p.G7309E 0.33 TCGA-QK-A6II-01 2 182346359 182346359 G A ITGA4 Silent p.Q263Q 0.14 TCGA-QK-A6II-01 2 191937885 191937885 G A STAT4 Missense_Mutation p.S135L 0.23 tolerated(0.22) benign(0.001) TCGA-QK-A6II-01 2 201437151 201437151 G T SGOL2 Missense_Mutation p.Q694H 0.26 tolerated(0.12) benign(0.063) TCGA-QK-A6II-01 2 25819047 25819047 G C DTNB Missense_Mutation p.L171V 0.33 deleterious(0) probably_damaging(1) TCGA-QK-A6II-01 2 27351467 27351467 G C ABHD1 Missense_Mutation p.Q91H 0.33 tolerated(0.08) benign(0.001) TCGA-QK-A6II-01 2 44548994 44548994 T C PREPL Missense_Mutation p.N689S 0.22 tolerated(0.99) benign(0.003) TCGA-QK-A6II-01 2 74141917 74141917 G C ACTG2 Missense_Mutation p.E242Q 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.839) TCGA-QK-A6II-01 2 79386510 79386510 G T REG3A Missense_Mutation p.P8T 0.21 tolerated(0.43) benign(0.007) TCGA-QK-A6II-01 2 80530351 80530351 C G LRRTM1 Missense_Mutation p.K198N 0.28 deleterious(0) possibly_damaging(0.516) TCGA-QK-A6II-01 2 9484911 9484911 G C ASAP2 Silent p.L335L 0.29 TCGA-QK-A6II-01 3 119428695 119428695 C G MAATS1 Silent p.L151L 0.14 TCGA-QK-A6II-01 3 121097619 121097619 C T STXBP5L Missense_Mutation p.R769C 0.35 deleterious(0.01) benign(0.359) TCGA-QK-A6II-01 3 121410218 121410218 C T GOLGB1 Missense_Mutation p.E2665K 0.24 benign(0.046) TCGA-QK-A6II-01 3 122133836 122133836 G T WDR5B Silent p.S180S 0.27 TCGA-QK-A6II-01 3 142217592 142217592 A G ATR Missense_Mutation p.V1802A 0.13 deleterious(0) possibly_damaging(0.863) TCGA-QK-A6II-01 3 23942311 23942311 T C NKIRAS1 Silent p.K108K 0.66 TCGA-QK-A6II-01 3 30729875 30729875 G A TGFBR2 Splice_Site p.X491_splice 0.54 TCGA-QK-A6II-01 3 33134285 33134285 G A TMPPE 3'UTR 0.68 TCGA-QK-A6II-01 3 33134654 33134654 G A TMPPE Missense_Mutation p.S345F 0.62 deleterious(0.04) benign(0.151) TCGA-QK-A6II-01 3 49899497 49899497 C T CAMKV Missense_Mutation p.E70K 0.61 deleterious(0) benign(0.168) TCGA-QK-A6II-01 3 51497226 51497226 C G VPRBP Silent p.V93V 0.42 TCGA-QK-A6II-01 3 79639112 79639112 C G ROBO1 Splice_Site 0.55 TCGA-QK-A6II-01 3 8944093 8944093 G C RAD18 Missense_Mutation p.S380C 0.54 deleterious(0.05) possibly_damaging(0.592) TCGA-QK-A6II-01 4 111539828 111539828 C T PITX2 Missense_Mutation p.R143H 0.20 deleterious(0) probably_damaging(1) TCGA-QK-A6II-01 4 141317106 141317106 C T CLGN Missense_Mutation p.G339E 0.23 deleterious(0) probably_damaging(0.999) TCGA-QK-A6II-01 4 153249385 153249385 G C FBXW7 Missense_Mutation p.R465G 0.18 deleterious(0) probably_damaging(0.999) TCGA-QK-A6II-01 4 153881969 153881969 A G FHDC1 Missense_Mutation p.I275V 0.12 deleterious(0.02) benign(0.217) TCGA-QK-A6II-01 4 173232894 173232894 G A GALNTL6 Missense_Mutation p.R126H 0.24 deleterious(0) probably_damaging(0.991) TCGA-QK-A6II-01 4 187535448 187535448 G C FAT1 Missense_Mutation p.I3042M 0.24 probably_damaging(0.918) TCGA-QK-A6II-01 4 187540475 187540475 A T FAT1 Missense_Mutation p.I2422K 0.27 benign(0.005) TCGA-QK-A6II-01 4 30723310 30723310 G A PCDH7 Missense_Mutation p.R89Q 0.12 tolerated(0.49) possibly_damaging(0.469) TCGA-QK-A6II-01 4 3419255 3419255 G T RGS12 Silent p.G916G 0.29 TCGA-QK-A6II-01 4 524368 524370 TTC - PIGG In_Frame_Del p.L804del 0.29 TCGA-QK-A6II-01 5 137206631 137206631 C G MYOT Silent p.L97L 0.18 TCGA-QK-A6II-01 5 139060867 139060867 C T CXXC5 Silent p.I253I 0.28 TCGA-QK-A6II-01 5 139061005 139061005 C G CXXC5 Silent p.L299L 0.23 TCGA-QK-A6II-01 5 140176983 140176983 A T PCDHA2 Intron 0.35 TCGA-QK-A6II-01 5 140262180 140262180 C T PCDHA13 Silent p.I109I 0.32 TCGA-QK-A6II-01 5 161113252 161113252 G A GABRA6 Missense_Mutation p.G19R 0.33 deleterious_low_confidence(0) benign(0.142) TCGA-QK-A6II-01 5 172659656 172659656 G A NKX2-5 Silent p.V297V 0.27 TCGA-QK-A6II-01 5 178359177 178359177 A G ZFP2 Missense_Mutation p.H288R 0.21 deleterious(0) probably_damaging(0.999) TCGA-QK-A6II-01 5 26915839 26915839 G A CDH9 Missense_Mutation p.P141L 0.30 deleterious(0.02) possibly_damaging(0.605) TCGA-QK-A6II-01 5 76349813 76349813 C T AGGF1 Silent p.Y497Y 0.32 TCGA-QK-A6II-01 6 107824918 107824918 G A SOBP Missense_Mutation p.E52K 0.32 deleterious(0) probably_damaging(0.972) TCGA-QK-A6II-01 6 13977405 13977405 G C RNF182 Missense_Mutation p.E19Q 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-QK-A6II-01 6 144508214 144508214 G T STX11 Missense_Mutation p.E150D 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-QK-A6II-01 6 146264650 146264650 A C SHPRH Missense_Mutation p.F623V 0.23 tolerated_low_confidence(0.88) benign(0) TCGA-QK-A6II-01 6 17796915 17796915 C T KIF13A Missense_Mutation p.R976K 0.28 tolerated(0.16) benign(0.311) TCGA-QK-A6II-01 6 26031895 26031895 G A HIST1H3B Missense_Mutation p.R132C 0.27 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-QK-A6II-01 6 26246933 26246933 G A HIST1H4G Silent p.L91L 0.27 TCGA-QK-A6II-01 6 31601231 31601231 G A PRRC2A Silent p.L1465L 0.23 TCGA-QK-A6II-01 6 51612982 51612982 G A PKHD1 Silent p.I3144I 0.29 TCGA-QK-A6II-01 6 51612983 51612983 A G PKHD1 Missense_Mutation p.I3144T 0.30 deleterious(0) probably_damaging(0.938) TCGA-QK-A6II-01 6 66112497 66112497 T A EYS Missense_Mutation p.D353V 0.29 tolerated(0.13) benign(0.148) TCGA-QK-A6II-01 6 82461310 82461310 G C FAM46A Silent p.L183L 0.26 TCGA-QK-A6II-01 6 90409883 90409883 G A MDN1 Silent p.H2923H 0.23 TCGA-QK-A6II-01 6 91260237 91260237 T C MAP3K7 Missense_Mutation p.Y300C 0.14 deleterious(0) probably_damaging(0.948) TCGA-QK-A6II-01 7 101266313 101266313 C T MYL10 Missense_Mutation p.D105N 0.20 tolerated(0.11) probably_damaging(0.966) TCGA-QK-A6II-01 7 129093089 129093089 C T STRIP2 Missense_Mutation p.S144L 0.30 tolerated(0.14) benign(0.056) TCGA-QK-A6II-01 7 134925454 134925454 C T STRA8 Missense_Mutation p.L82F 0.22 tolerated(0.78) benign(0.055) TCGA-QK-A6II-01 7 142180948 142180948 C G TRBV6-5 Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.914) TCGA-QK-A6II-01 7 39504133 39504133 G C POU6F2 Missense_Mutation p.E642Q 0.35 tolerated(0.11) unknown(0) TCGA-QK-A6II-01 7 45750164 45750164 C T ADCY1 Silent p.G990G 0.42 TCGA-QK-A6II-01 7 5410702 5410702 G C TNRC18 Missense_Mutation p.L1175V 0.19 benign(0.199) TCGA-QK-A6II-01 7 91737898 91737898 T C AKAP9 Silent p.Y3879Y 0.30 TCGA-QK-A6II-01 7 98649936 98649936 G C SMURF1 Missense_Mutation p.Q205E 0.27 tolerated(1) benign(0.007) TCGA-QK-A6II-01 8 113308070 113308070 G A CSMD3 Missense_Mutation p.S2869F 0.10 tolerated(0.43) possibly_damaging(0.756) TCGA-QK-A6II-01 8 134107289 134107289 G C TG Missense_Mutation p.G2414A 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-QK-A6II-01 8 134232846 134232846 C T WISP1 Silent p.V124V 0.15 TCGA-QK-A6II-01 8 17434770 17434770 C G PDGFRL Silent p.V3V 0.38 TCGA-QK-A6II-01 8 27995295 27995295 T C ELP3 Silent p.Y329Y 0.39 TCGA-QK-A6II-01 8 28671006 28671006 C T INTS9 Intron 0.28 TCGA-QK-A6II-01 8 28707753 28707753 C T INTS9 Missense_Mutation p.D59N 0.28 tolerated(0.27) possibly_damaging(0.704) TCGA-QK-A6II-01 8 33451109 33451109 C T DUSP26 Missense_Mutation p.M126I 0.31 tolerated(0.63) possibly_damaging(0.675) TCGA-QK-A6II-01 8 89053960 89053960 T C MMP16 Missense_Mutation p.E518G 0.16 deleterious(0.02) probably_damaging(0.965) TCGA-QK-A6II-01 9 105768179 105768179 G T CYLC2 3'UTR 0.43 TCGA-QK-A6II-01 9 113171109 113171109 C G SVEP1 Silent p.L2257L 0.23 TCGA-QK-A6II-01 9 118949908 118949908 G T PAPPA Missense_Mutation p.W297C 0.24 deleterious(0) probably_damaging(0.941) TCGA-QK-A6II-01 9 130272455 130272455 G A FAM129B Silent p.I377I 0.41 TCGA-QK-A6II-01 9 135187212 135187212 C G SETX Missense_Mutation p.R1769T 0.41 deleterious(0.01) benign(0.003) TCGA-QK-A6II-01 9 139413262 139413262 C A NOTCH1 Nonsense_Mutation p.E294* 0.65 TCGA-QK-A6II-01 9 139740915 139740915 C G C9orf172 Missense_Mutation p.F683L 0.36 deleterious(0.03) benign(0.019) TCGA-QK-A6II-01 9 163990 163990 T C CBWD1 Missense_Mutation p.I160V 0.28 tolerated(0.11) benign(0.173) TCGA-QK-A6II-01 9 21971156 21971156 C G CDKN2A Missense_Mutation p.A68P 0.29 deleterious(0) probably_damaging(1) TCGA-QK-A6II-01 9 35045669 35045669 C A C9orf131 Missense_Mutation p.P1015T 0.30 deleterious(0.03) possibly_damaging(0.592) TCGA-QK-A6II-01 9 35715165 35715165 T G TLN1 Missense_Mutation p.D882A 0.28 tolerated(0.09) probably_damaging(0.994) TCGA-QK-A6II-01 9 4701900 4701900 G C CDC37L1 Missense_Mutation p.E262Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-QK-A6II-01 9 5787438 5787438 C G ERMP1 Missense_Mutation p.E848Q 0.37 deleterious(0.01) probably_damaging(0.938) TCGA-QK-A6II-01 9 5922663 5922663 C G KIAA2026 Silent p.V1111V 0.27 TCGA-QK-A6II-01 9 79895113 79895113 G C VPS13A Missense_Mutation p.D955H 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-QK-A6II-01 X 129059987 129059987 A T UTP14A Missense_Mutation p.E614D 0.69 deleterious(0.05) benign(0.094) TCGA-QK-A6II-01 X 135825852 135825852 C - ARHGEF6 Frame_Shift_Del p.D185Tfs*18 0.40 TCGA-QK-A6II-01 X 13734173 13734173 C T TRAPPC2 Missense_Mutation p.E126K 0.25 deleterious(0) possibly_damaging(0.879) TCGA-QK-A6II-01 X 151899861 151899861 C G MAGEA12 Missense_Mutation p.E314Q 0.33 deleterious(0.02) possibly_damaging(0.831) TCGA-QK-A6II-01 X 21550081 21550081 G A CNKSR2 Missense_Mutation p.R400Q 0.26 tolerated(0.07) benign(0.44) TCGA-QK-A6II-01 X 21875100 21875100 G A YY2 Silent p.T166T 0.38 TCGA-QK-A6II-01 X 26213017 26213017 C T MAGEB6 Missense_Mutation p.P352S 0.71 deleterious(0) probably_damaging(0.998) TCGA-QK-A6II-01 X 53592084 53592087 GACT - HUWE1 Frame_Shift_Del p.K2274Mfs*55 0.54 TCGA-QK-A6II-01 X 591898 591898 G C SHOX Missense_Mutation p.R89T 0.31 deleterious(0.05) benign(0.031) TCGA-QK-A6II-01 X 69264203 69264203 T A AWAT2 Silent p.R65R 0.74 TCGA-QK-A6II-01 X 7811937 7811937 G C VCX Missense_Mutation p.E167D 0.14 tolerated(0.18) unknown(0) TCGA-QK-A6II-01 X 7870135 7870135 G A PNPLA4 Silent p.V175V 0.33 TCGA-QK-A6IJ-01 10 105781483 105781483 A G SLK Missense_Mutation p.R1185G 0.11 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IJ-01 10 60546740 60546740 G A BICC1 Missense_Mutation p.G149S 0.09 deleterious(0) probably_damaging(1) TCGA-QK-A6IJ-01 10 81146100 81146100 G A ZCCHC24 3'UTR 0.09 TCGA-QK-A6IJ-01 11 121414336 121414336 G A SORL1 Missense_Mutation p.E589K 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-QK-A6IJ-01 12 114395756 114395756 G T RBM19 Nonsense_Mutation p.S224* 0.11 TCGA-QK-A6IJ-01 12 31244771 31244771 C T DDX11 Missense_Mutation p.T403M 0.08 deleterious(0.01) probably_damaging(0.967) TCGA-QK-A6IJ-01 12 64814176 64814176 C T XPOT Missense_Mutation p.R240W 0.05 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IJ-01 12 81205345 81205345 C T LIN7A Missense_Mutation p.E201K 0.29 deleterious(0.01) possibly_damaging(0.636) TCGA-QK-A6IJ-01 12 96409361 96409361 C T LTA4H Silent p.S353S 0.07 TCGA-QK-A6IJ-01 14 72176267 72176267 G A SIPA1L1 Missense_Mutation p.R1386Q 0.22 tolerated(0.18) benign(0.002) TCGA-QK-A6IJ-01 15 40468799 40468799 G A BUB1B Missense_Mutation p.R169K 0.09 tolerated(1) benign(0.001) TCGA-QK-A6IJ-01 15 45387290 45387290 C A DUOX2 Splice_Site p.X1414_splice 0.11 TCGA-QK-A6IJ-01 16 28330378 28330378 G A SBK1 Missense_Mutation p.E97K 0.20 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IJ-01 16 3789597 3789597 C A CREBBP Missense_Mutation p.C1421F 0.20 unknown(0) TCGA-QK-A6IJ-01 16 53496504 53496504 C G RBL2 Nonsense_Mutation p.Y499* 0.27 TCGA-QK-A6IJ-01 17 35470193 35470193 G A ACACA Silent p.Y2094Y 0.09 TCGA-QK-A6IJ-01 17 39725792 39725792 C T KRT9 Silent p.E310E 0.41 TCGA-QK-A6IJ-01 17 61615533 61615533 C G KCNH6 Missense_Mutation p.R537G 0.10 deleterious(0) possibly_damaging(0.676) TCGA-QK-A6IJ-01 17 61829712 61829712 C G CCDC47 Missense_Mutation p.D391H 0.07 deleterious(0) probably_damaging(0.967) TCGA-QK-A6IJ-01 17 72859026 72859026 G C FDXR Silent p.A506A 0.06 TCGA-QK-A6IJ-01 17 7578397 7578398 - GG TP53 Frame_Shift_Ins p.H178Pfs*70 0.35 TCGA-QK-A6IJ-01 17 79163626 79163626 G A AZI1 Silent p.A1062A 0.07 TCGA-QK-A6IJ-01 18 46197071 46197071 G A CTIF Missense_Mutation p.G155S 0.09 tolerated_low_confidence(0.28) benign(0.017) TCGA-QK-A6IJ-01 18 58039415 58039415 G T MC4R Silent p.V56V 0.15 TCGA-QK-A6IJ-01 19 3623701 3623701 G T CACTIN Silent p.T209T 0.19 TCGA-QK-A6IJ-01 19 41497219 41497219 C A CYP2B6 Silent p.L3L 0.16 TCGA-QK-A6IJ-01 19 48783017 48783017 C T ZNF114 5'UTR 0.13 TCGA-QK-A6IJ-01 19 53770752 53770752 G C VN1R4 Missense_Mutation p.A56G 0.13 deleterious(0) benign(0.062) TCGA-QK-A6IJ-01 1 102290602 102290602 C T OLFM3 Missense_Mutation p.R191H 0.09 tolerated(0.64) benign(0.003) TCGA-QK-A6IJ-01 1 160275290 160275290 C T COPA Missense_Mutation p.A543T 0.13 tolerated(0.24) benign(0.049) TCGA-QK-A6IJ-01 1 182025763 182025763 C T ZNF648 Silent p.S461S 0.17 TCGA-QK-A6IJ-01 1 19464666 19464666 C T UBR4 Missense_Mutation p.R2914Q 0.17 probably_damaging(0.973) TCGA-QK-A6IJ-01 1 20005833 20005833 C T HTR6 Missense_Mutation p.P432L 0.11 tolerated_low_confidence(1) benign(0) TCGA-QK-A6IJ-01 1 207647012 207647012 T A CR2 Missense_Mutation p.S701T 0.08 tolerated(0.25) benign(0.028) TCGA-QK-A6IJ-01 1 214813371 214813371 G T CENPF Nonsense_Mutation p.E564* 0.13 TCGA-QK-A6IJ-01 1 240256708 240256708 G A FMN2 Silent p.P433P 0.13 TCGA-QK-A6IJ-01 1 247654618 247654618 T G OR2W5 RNA 0.11 TCGA-QK-A6IJ-01 1 39785411 39785411 A G MACF1 Missense_Mutation p.I1346V 0.10 benign(0.012) TCGA-QK-A6IJ-01 20 23966523 23966523 C T GGTLC1 Silent p.T131T 0.17 TCGA-QK-A6IJ-01 20 34025503 34025504 - C GDF5 Frame_Shift_Ins p.A69Gfs*25 0.67 TCGA-QK-A6IJ-01 20 40041963 40041963 C G CHD6 Splice_Site p.X2377_splice 0.09 TCGA-QK-A6IJ-01 22 21134193 21134193 T C SERPIND1 Missense_Mutation p.I198T 0.09 deleterious(0) possibly_damaging(0.715) TCGA-QK-A6IJ-01 22 37603255 37603255 G A SSTR3 Silent p.P196P 0.25 TCGA-QK-A6IJ-01 2 131976330 131976330 G A POTEE Missense_Mutation p.A119T 0.10 tolerated_low_confidence(0.13) possibly_damaging(0.499) TCGA-QK-A6IJ-01 2 166032861 166032861 C T SCN3A Missense_Mutation p.R15H 0.09 tolerated(0.12) probably_damaging(0.995) TCGA-QK-A6IJ-01 2 224831662 224831662 C G MRPL44 Missense_Mutation p.L304V 0.05 tolerated(0.08) benign(0.031) TCGA-QK-A6IJ-01 2 230911162 230911162 C T SLC16A14 Missense_Mutation p.R227H 0.09 tolerated(0.18) benign(0.002) TCGA-QK-A6IJ-01 2 25964902 25964902 C T ASXL2 Missense_Mutation p.R1435Q 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-QK-A6IJ-01 2 30682532 30682532 C T LCLAT1 Silent p.N18N 0.04 TCGA-QK-A6IJ-01 2 74733307 74733307 C T PCGF1 Splice_Site p.X142_splice 0.24 TCGA-QK-A6IJ-01 3 113684062 113684062 G A ZDHHC23 3'Flank 0.07 TCGA-QK-A6IJ-01 3 184106781 184106781 G A CHRD Missense_Mutation p.R937Q 0.15 tolerated(0.62) benign(0.003) TCGA-QK-A6IJ-01 4 114262919 114262919 C T ANK2 Silent p.C1323C 0.08 TCGA-QK-A6IJ-01 4 134071624 134071624 T A PCDH10 Missense_Mutation p.I110N 0.08 deleterious(0) possibly_damaging(0.795) TCGA-QK-A6IJ-01 4 134072242 134072242 T G PCDH10 Missense_Mutation p.L316W 0.09 deleterious(0) probably_damaging(0.989) TCGA-QK-A6IJ-01 4 43032528 43032528 C T GRXCR1 Missense_Mutation p.L282F 0.09 deleterious(0) probably_damaging(0.998) TCGA-QK-A6IJ-01 4 71063863 71063863 G T ODAM Missense_Mutation p.G122C 0.11 deleterious(0) probably_damaging(0.991) TCGA-QK-A6IJ-01 4 88903741 88903741 C T SPP1 Missense_Mutation p.A213V 0.10 tolerated(0.45) benign(0.001) TCGA-QK-A6IJ-01 4 89400553 89400553 G A HERC5 Silent p.Q544Q 0.09 TCGA-QK-A6IJ-01 4 96762259 96762259 G A PDHA2 Missense_Mutation p.D320N 0.09 tolerated(0.22) benign(0.042) TCGA-QK-A6IJ-01 5 140263367 140263367 C T PCDHA13 Missense_Mutation p.S505L 0.17 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-QK-A6IJ-01 5 140476476 140476476 C T PCDHB2 Missense_Mutation p.S701L 0.11 deleterious_low_confidence(0) benign(0.075) TCGA-QK-A6IJ-01 5 140718758 140718758 C A PCDHGA2 Missense_Mutation p.L74I 0.14 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-QK-A6IJ-01 5 142264901 142264901 T C ARHGAP26 Silent p.Y141Y 0.06 TCGA-QK-A6IJ-01 5 180419832 180419833 - CC BTNL3 Frame_Shift_Ins p.G25Rfs*65 0.27 TCGA-QK-A6IJ-01 5 63257049 63257049 G A HTR1A Silent p.L166L 0.07 TCGA-QK-A6IJ-01 5 65058924 65058924 G T NLN Missense_Mutation p.V147F 0.10 tolerated(0.08) benign(0.017) TCGA-QK-A6IJ-01 6 25813193 25813193 T C SLC17A1 Missense_Mutation p.I255V 0.06 tolerated(0.07) possibly_damaging(0.765) TCGA-QK-A6IJ-01 7 142494265 142494265 T C TRBJ2-2 Missense_Mutation p.F8S 0.12 unknown(0) TCGA-QK-A6IJ-01 7 142622745 142622745 G A TRPV5 Missense_Mutation p.A334V 0.08 tolerated(1) benign(0.02) TCGA-QK-A6IJ-01 7 148769032 148769032 G A ZNF786 Nonsense_Mutation p.R278* 0.12 TCGA-QK-A6IJ-01 7 152511678 152511678 C A ACTR3B Missense_Mutation p.A127E 0.07 deleterious(0) probably_damaging(0.999) TCGA-QK-A6IJ-01 7 6370828 6370828 G A FAM220A 5'UTR 0.29 TCGA-QK-A6IJ-01 8 104709513 104709513 C T RIMS2 Missense_Mutation p.R126C 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QK-A6IJ-01 8 132002726 132002726 C T ADCY8 Silent p.L341L 0.07 TCGA-QK-A6IJ-01 8 142432392 142432392 C T PTP4A3 Missense_Mutation p.R18C 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-QK-A6IJ-01 9 107578573 107578573 C A ABCA1 Missense_Mutation p.V1197L 0.08 tolerated(0.15) possibly_damaging(0.574) TCGA-QK-A6IJ-01 9 111903627 111903627 A G FRRS1L Silent p.I286I 0.17 TCGA-QK-A6IJ-01 9 139839826 139839826 G A C8G Silent p.S18S 0.21 TCGA-QK-A6IJ-01 9 21974799 21974799 C A CDKN2A Nonsense_Mutation p.E10* 0.66 TCGA-QK-A6IJ-01 X 129761945 129761945 C T ENOX2 Missense_Mutation p.R563H 0.12 deleterious(0) probably_damaging(0.996) TCGA-QK-A6IJ-01 X 155239601 155239601 C T IL9R Missense_Mutation p.R365C 0.05 tolerated(0.19) benign(0.001) TCGA-QK-A6IJ-01 X 15568081 15568081 G A BMX Silent p.S638S 0.14 TCGA-QK-A6V9-01 11 46407895 46407895 G C CHRM4 Silent p.L71L 0.28 TCGA-QK-A6V9-01 11 62291175 62291175 G T AHNAK Missense_Mutation p.L3572M 0.26 benign(0.23) TCGA-QK-A6V9-01 11 62373658 62373658 G A EML3 Silent p.H511H 0.23 TCGA-QK-A6V9-01 11 66260377 66260377 C T DPP3 Silent p.P393P 0.24 TCGA-QK-A6V9-01 11 6942996 6942996 C T OR2D3 Missense_Mutation p.S255F 0.24 deleterious(0.03) possibly_damaging(0.651) TCGA-QK-A6V9-01 12 106633043 106633043 C A CKAP4 Missense_Mutation p.R523L 0.31 tolerated(0.3) benign(0.127) TCGA-QK-A6V9-01 12 123480156 123480156 C T PITPNM2 Missense_Mutation p.G612S 0.12 tolerated(0.76) benign(0.002) TCGA-QK-A6V9-01 12 46245982 46245982 A G ARID2 Missense_Mutation p.N1359S 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-QK-A6V9-01 12 4830002 4830002 C T GALNT8 Silent p.Y53Y 0.23 TCGA-QK-A6V9-01 12 56755864 56755864 C T APOF Silent p.Q42Q 0.37 TCGA-QK-A6V9-01 12 57033894 57033894 G A ATP5B Missense_Mutation p.S386L 0.24 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-QK-A6V9-01 12 6058985 6058986 - T VWF Frame_Shift_Ins p.S2741Vfs*2 0.22 TCGA-QK-A6V9-01 12 7046325 7046325 C T ATN1 Missense_Mutation p.S632F 0.26 probably_damaging(0.99) TCGA-QK-A6V9-01 12 7046450 7046450 C G ATN1 Missense_Mutation p.R674G 0.28 benign(0.01) TCGA-QK-A6V9-01 13 114538573 114538574 CC - GAS6 Frame_Shift_Del p.E209Gfs*15 0.32 TCGA-QK-A6V9-01 13 49027168 49027168 C T RB1 Nonsense_Mutation p.R579* 0.33 TCGA-QK-A6V9-01 14 102675621 102675621 G A WDR20 Missense_Mutation p.V403M 0.29 deleterious(0) probably_damaging(0.989) TCGA-QK-A6V9-01 15 41245817 41245817 C T CHAC1 Silent p.P54P 0.13 TCGA-QK-A6V9-01 16 19468240 19468240 G A TMC5 Intron 0.31 TCGA-QK-A6V9-01 16 2495538 2495538 T C CCNF Missense_Mutation p.C337R 0.29 deleterious(0) probably_damaging(0.974) TCGA-QK-A6V9-01 16 31105632 31105632 C T VKORC1 Intron 0.31 TCGA-QK-A6V9-01 16 84806160 84806160 G A USP10 Missense_Mutation p.R671Q 0.26 tolerated(0.3) possibly_damaging(0.668) TCGA-QK-A6V9-01 16 85952173 85952173 G A IRF8 Missense_Mutation p.R251H 0.37 tolerated(0.58) possibly_damaging(0.851) TCGA-QK-A6V9-01 17 40839806 40839806 C T CNTNAP1 Silent p.F371F 0.25 TCGA-QK-A6V9-01 17 42248325 42248325 C T ASB16 Silent p.C56C 0.08 TCGA-QK-A6V9-01 17 43367868 43367868 C G MAP3K14 RNA 0.25 TCGA-QK-A6V9-01 17 46939666 46939666 G A CALCOCO2 Silent p.P415P 0.25 TCGA-QK-A6V9-01 17 76823412 76823412 G A USP36 Missense_Mutation p.R202C 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-QK-A6V9-01 17 78113871 78113871 G A EIF4A3 Silent p.G147G 0.32 TCGA-QK-A6V9-01 17 79686890 79686890 G A SLC25A10 Silent p.A254A 0.29 TCGA-QK-A6V9-01 17 79813069 79813069 G A P4HB Silent p.D191D 0.29 TCGA-QK-A6V9-01 18 9517239 9517239 G A RALBP1 Missense_Mutation p.R214H 0.05 deleterious(0) probably_damaging(0.985) TCGA-QK-A6V9-01 19 10753987 10753987 G A SLC44A2 Missense_Mutation p.E683K 0.22 deleterious(0.02) probably_damaging(0.973) TCGA-QK-A6V9-01 19 22154798 22154798 G A ZNF208 Missense_Mutation p.S1013L 0.21 tolerated(0.63) benign(0.116) TCGA-QK-A6V9-01 19 41082889 41082889 G C SHKBP1 Missense_Mutation p.K28N 0.36 tolerated(0.05) benign(0.374) TCGA-QK-A6V9-01 19 44571810 44571810 A G ZNF223 3'UTR 0.21 TCGA-QK-A6V9-01 19 50399114 50399114 G A IL4I1 Silent p.A92A 0.18 TCGA-QK-A6V9-01 19 53454609 53454609 T C ZNF816 Missense_Mutation p.D140G 0.14 tolerated(0.11) possibly_damaging(0.781) TCGA-QK-A6V9-01 19 54617896 54617896 G T TFPT Silent p.R70R 0.10 TCGA-QK-A6V9-01 19 5784249 5784249 C T CTB-54O9.9 3'UTR 0.05 TCGA-QK-A6V9-01 1 109794501 109794501 C T CELSR2 Silent p.V600V 0.21 TCGA-QK-A6V9-01 1 117127584 117127584 G T IGSF3 Missense_Mutation p.T864N 0.22 tolerated(0.1) benign(0.071) TCGA-QK-A6V9-01 1 157668357 157668357 T C FCRL3 Missense_Mutation p.K39E 0.11 tolerated(0.45) benign(0.016) TCGA-QK-A6V9-01 1 180240698 180240698 G A LHX4 Intron 0.11 TCGA-QK-A6V9-01 1 190067582 190067582 C T BRINP3 Missense_Mutation p.E623K 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-QK-A6V9-01 1 197070003 197070003 A G ASPM Missense_Mutation p.M2793T 0.30 tolerated(0.54) benign(0.002) TCGA-QK-A6V9-01 1 214169844 214169844 C T PROX1 5'UTR 0.12 TCGA-QK-A6V9-01 1 32205187 32205187 C T BAI2 Silent p.T739T 0.14 TCGA-QK-A6V9-01 1 40536136 40536136 C T CAP1 Silent p.D384D 0.21 TCGA-QK-A6V9-01 1 40701720 40701720 A C RLF Missense_Mutation p.N449T 0.36 deleterious(0) probably_damaging(0.998) TCGA-QK-A6V9-01 1 85655743 85655743 C A SYDE2 Missense_Mutation p.A480S 0.29 tolerated(0.27) benign(0.007) TCGA-QK-A6V9-01 1 87563592 87563592 C G HS2ST1 Missense_Mutation p.F220L 0.25 deleterious(0) probably_damaging(0.952) TCGA-QK-A6V9-01 1 90473298 90473298 C T ZNF326 Nonsense_Mutation p.R202* 0.17 TCGA-QK-A6V9-01 20 32211032 32211032 G A CBFA2T2 Missense_Mutation p.A217T 0.13 tolerated(0.59) benign(0.001) TCGA-QK-A6V9-01 20 34459693 34459693 G A PHF20 Silent p.T408T 0.21 TCGA-QK-A6V9-01 20 39985680 39985680 C T LPIN3 Missense_Mutation p.R602W 0.14 deleterious(0.03) benign(0.006) TCGA-QK-A6V9-01 20 42169875 42169875 C T L3MBTL1 3'UTR 0.18 TCGA-QK-A6V9-01 22 31740796 31740796 G A PATZ1 Nonsense_Mutation p.R265* 0.32 TCGA-QK-A6V9-01 2 127953055 127953055 G A CYP27C1 Missense_Mutation p.T192I 0.25 deleterious(0) benign(0.16) TCGA-QK-A6V9-01 2 158272257 158272257 G A CYTIP Nonsense_Mutation p.R338* 0.08 TCGA-QK-A6V9-01 2 182794494 182794494 C T SSFA2 3'UTR 0.25 TCGA-QK-A6V9-01 2 88478395 88478395 C T THNSL2 Missense_Mutation p.S222L 0.26 deleterious(0) probably_damaging(0.993) TCGA-QK-A6V9-01 3 119205708 119205708 C G POGLUT1 Missense_Mutation p.L223V 0.03 deleterious(0) possibly_damaging(0.521) TCGA-QK-A6V9-01 3 168812977 168812977 C T MECOM Missense_Mutation p.R846H 0.04 deleterious(0) possibly_damaging(0.781) TCGA-QK-A6V9-01 3 196454932 196454932 C T PIGX Missense_Mutation p.H153Y 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-QK-A6V9-01 3 33592770 33592770 C G CLASP2 Missense_Mutation p.E1051Q 0.42 deleterious(0.01) benign(0.057) TCGA-QK-A6V9-01 3 49343283 49343283 G A USP4 Silent p.L331L 0.09 TCGA-QK-A6V9-01 3 66501997 66501997 G A LRIG1 Silent p.V117V 0.05 TCGA-QK-A6V9-01 4 113199441 113199441 G A TIFA Silent p.S44S 0.25 TCGA-QK-A6V9-01 4 119952399 119952399 C T SYNPO2 Silent p.N823N 0.13 TCGA-QK-A6V9-01 4 125591221 125591221 G A ANKRD50 Missense_Mutation p.P1071S 0.22 deleterious(0.02) probably_damaging(0.99) TCGA-QK-A6V9-01 4 146460987 146460987 C T SMAD1 Silent p.S144S 0.13 TCGA-QK-A6V9-01 4 175898251 175898251 C A ADAM29 Missense_Mutation p.N525K 0.19 deleterious(0) probably_damaging(0.999) TCGA-QK-A6V9-01 4 1803564 1803564 C T FGFR3 Missense_Mutation p.R248C 0.16 deleterious(0) probably_damaging(0.977) TCGA-QK-A6V9-01 4 1808029 1808029 C G FGFR3 Missense_Mutation p.R671G 0.39 deleterious(0.01) benign(0.121) TCGA-QK-A6V9-01 4 44682767 44682767 C T GUF1 Nonsense_Mutation p.R112* 0.17 TCGA-QK-A6V9-01 4 83378133 83378133 T C ENOPH1 Silent p.I196I 0.06 TCGA-QK-A6V9-01 5 122708454 122708454 C T CEP120 Missense_Mutation p.E791K 0.19 deleterious(0.04) benign(0.209) TCGA-QK-A6V9-01 5 134305762 134305762 C T CATSPER3 Missense_Mutation p.R78C 0.27 deleterious(0.01) possibly_damaging(0.613) TCGA-QK-A6V9-01 5 150498944 150498944 C G ANXA6 Missense_Mutation p.G452A 0.07 deleterious(0.01) probably_damaging(1) TCGA-QK-A6V9-01 5 31534463 31534463 G T C5orf22 Missense_Mutation p.D56Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-QK-A6V9-01 5 45262772 45262772 G A HCN1 Missense_Mutation p.P642S 0.23 tolerated(0.49) benign(0) TCGA-QK-A6V9-01 5 72201220 72201220 G A TNPO1 Missense_Mutation p.A894T 0.29 tolerated(0.51) benign(0) TCGA-QK-A6V9-01 5 73205639 73205639 C T ARHGEF28 Missense_Mutation p.R1522W 0.50 deleterious(0.02) possibly_damaging(0.696) TCGA-QK-A6V9-01 5 94230404 94230404 C T MCTP1 Missense_Mutation p.V597I 0.28 tolerated(0.08) benign(0.012) TCGA-QK-A6V9-01 6 51889462 51889462 C T PKHD1 Missense_Mutation p.V1716I 0.26 tolerated(0.13) benign(0.046) TCGA-QK-A6V9-01 7 100189426 100189426 G A FBXO24 Silent p.G191G 0.29 TCGA-QK-A6V9-01 7 107674717 107674717 C G LAMB4 Missense_Mutation p.R1585P 0.25 tolerated(0.12) benign(0.008) TCGA-QK-A6V9-01 7 143140993 143140993 G A TAS2R60 Missense_Mutation p.G150R 0.35 tolerated(0.07) probably_damaging(0.998) TCGA-QK-A6V9-01 7 150775682 150775682 G A FASTK Silent p.F264F 0.24 TCGA-QK-A6V9-01 7 70228014 70228014 C T AUTS2 Nonsense_Mutation p.Q301* 0.34 TCGA-QK-A6V9-01 8 22136898 22136898 C G PIWIL2 5'UTR 0.25 TCGA-QK-A6V9-01 8 26627488 26627488 C G ADRA1A Intron 0.34 TCGA-QK-A6V9-01 9 35675835 35675835 G A CA9 Missense_Mutation p.A171T 0.21 tolerated(1) benign(0.016) TCGA-QK-A6V9-01 X 107976934 107976934 G T IRS4 Missense_Mutation p.P881T 0.39 tolerated(0.05) unknown(0) TCGA-QK-A6V9-01 X 129545370 129545370 C T RBMX2 Missense_Mutation p.P118S 0.71 deleterious(0) probably_damaging(0.934) TCGA-QK-A6V9-01 X 152968412 152968412 G A BCAP31 Silent p.D260D 0.28 TCGA-QK-A6V9-01 Y 6938313 6938313 C T TBL1Y Silent p.H178H 0.56 TCGA-QK-A6VB-01 10 104174659 104174661 TCT - PSD In_Frame_Del p.E361del 0.81 TCGA-QK-A6VB-01 10 106130766 106130766 A T CCDC147 Missense_Mutation p.E348D 0.09 tolerated(0.12) benign(0.036) TCGA-QK-A6VB-01 10 115609585 115609585 T C DCLRE1A Missense_Mutation p.K427E 0.44 tolerated(0.23) benign(0.009) TCGA-QK-A6VB-01 10 120354500 120354500 G A PRLHR Missense_Mutation p.A86V 0.42 tolerated(0.3) benign(0.004) TCGA-QK-A6VB-01 10 122263361 122263361 G C PPAPDC1A Missense_Mutation p.V30L 0.81 tolerated(0.41) benign(0.002) TCGA-QK-A6VB-01 10 13179030 13179030 A C OPTN 3'UTR 0.21 TCGA-QK-A6VB-01 10 21141501 21141501 A G NEBL Silent p.H327H 0.32 TCGA-QK-A6VB-01 10 26457731 26457731 G T MYO3A Missense_Mutation p.A1068S 0.21 deleterious(0.02) benign(0.019) TCGA-QK-A6VB-01 10 33208969 33208969 T - ITGB1 Frame_Shift_Del p.K438Rfs*17 0.21 TCGA-QK-A6VB-01 10 38306270 38306270 A G ZNF33A Missense_Mutation p.E69G 0.14 deleterious(0) probably_damaging(0.972) TCGA-QK-A6VB-01 10 50732641 50732641 C T ERCC6-PGBD3 Missense_Mutation p.A279T 0.22 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-QK-A6VB-01 10 5203699 5203699 C A AKR1CL1 Intron 0.14 TCGA-QK-A6VB-01 10 55566748 55566749 AT - PCDH15 Frame_Shift_Del p.I1546Cfs*31 0.65 TCGA-QK-A6VB-01 10 55780162 55780162 G A PCDH15 Silent p.D847D 0.73 TCGA-QK-A6VB-01 10 64000924 64000924 G A RTKN2 Missense_Mutation p.S116F 0.11 deleterious(0.02) probably_damaging(0.972) TCGA-QK-A6VB-01 10 69966598 69966598 A G MYPN Missense_Mutation p.Y1244C 0.72 deleterious(0) probably_damaging(0.988) TCGA-QK-A6VB-01 10 75299343 75299344 - A USP54 Frame_Shift_Ins p.R279Qfs*5 0.37 TCGA-QK-A6VB-01 10 75526247 75526247 C T SEC24C Silent p.L583L 0.13 TCGA-QK-A6VB-01 10 81056437 81056437 C T ZMIZ1 Intron 0.17 TCGA-QK-A6VB-01 10 81192499 81192499 C T ZCCHC24 Missense_Mutation p.V88M 0.79 tolerated_low_confidence(0.21) benign(0.117) TCGA-QK-A6VB-01 10 88649931 88649931 G A BMPR1A Silent p.K60K 0.77 TCGA-QK-A6VB-01 10 89720852 89720852 C T PTEN Nonsense_Mutation p.R335* 0.76 TCGA-QK-A6VB-01 10 90695136 90695136 A G ACTA2 Intron 0.22 TCGA-QK-A6VB-01 10 97141462 97141462 C T SORBS1 Missense_Mutation p.V545I 0.87 tolerated_low_confidence(0.11) benign(0.052) TCGA-QK-A6VB-01 10 99343487 99343487 G A ANKRD2 3'UTR 0.36 TCGA-QK-A6VB-01 11 116692031 116692033 TTC - APOA4 In_Frame_Del p.K247del 0.41 TCGA-QK-A6VB-01 11 11964389 11964389 A G USP47 Missense_Mutation p.I873V 0.06 tolerated(0.14) possibly_damaging(0.761) TCGA-QK-A6VB-01 11 122928465 122928465 G A HSPA8 Missense_Mutation p.P640S 0.71 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-QK-A6VB-01 11 123524616 123524616 G - SCN3B 5'UTR 0.29 TCGA-QK-A6VB-01 11 124294014 124294015 - A OR8B4 Frame_Shift_Ins p.G252Wfs*34 0.42 TCGA-QK-A6VB-01 11 1279559 1279559 G A MUC5B Splice_Site p.X5519_splice 0.11 TCGA-QK-A6VB-01 11 13375941 13375941 G A ARNTL Missense_Mutation p.G29D 0.11 tolerated(0.1) benign(0.131) TCGA-QK-A6VB-01 11 17139068 17139068 T C PIK3C2A Silent p.K1062K 0.24 TCGA-QK-A6VB-01 11 18320386 18320386 C T HPS5 Missense_Mutation p.A373T 0.15 deleterious(0) probably_damaging(0.99) TCGA-QK-A6VB-01 11 35218339 35218339 G A CD44 Silent p.R238R 0.15 TCGA-QK-A6VB-01 11 47599055 47599055 G A KBTBD4 Missense_Mutation p.A182V 0.13 deleterious(0.04) probably_damaging(0.988) TCGA-QK-A6VB-01 11 47611715 47611715 C T C1QTNF4 Silent p.A216A 0.58 TCGA-QK-A6VB-01 11 4843542 4843542 G A OR51F2 Silent p.K309K 0.55 TCGA-QK-A6VB-01 11 55065372 55065372 C A TRIM51HP RNA 0.05 TCGA-QK-A6VB-01 11 55703121 55703121 G T OR5I1 Silent p.I252I 0.57 TCGA-QK-A6VB-01 11 58978660 58978660 C - MPEG1 Frame_Shift_Del p.G560Afs*43 0.26 TCGA-QK-A6VB-01 11 62747316 62747316 G A SLC22A6 Missense_Mutation p.A381V 0.53 deleterious(0) probably_damaging(0.91) TCGA-QK-A6VB-01 11 62996938 62996938 C A SLC22A25 Missense_Mutation p.D63Y 0.32 deleterious(0.01) benign(0.071) TCGA-QK-A6VB-01 11 6411782 6411783 - G SMPD1 5'UTR 0.58 TCGA-QK-A6VB-01 11 64521111 64521111 C T PYGM Missense_Mutation p.R428H 0.27 deleterious(0.02) benign(0.013) TCGA-QK-A6VB-01 11 6477356 6477356 G A TRIM3 Silent p.S493S 0.20 TCGA-QK-A6VB-01 11 65272474 65272474 C T MALAT1 RNA 0.24 TCGA-QK-A6VB-01 11 65375418 65375418 G - MAP3K11 Frame_Shift_Del p.E349Sfs*70 0.20 TCGA-QK-A6VB-01 11 65650554 65650554 C A CTSW Missense_Mutation p.L254M 0.19 deleterious(0.02) probably_damaging(0.972) TCGA-QK-A6VB-01 11 66055105 66055105 G - YIF1A Frame_Shift_Del p.R131Gfs*50 0.20 TCGA-QK-A6VB-01 11 6645101 6645101 A G DCHS1 Silent p.F2602F 0.08 TCGA-QK-A6VB-01 11 66461787 66461787 G A SPTBN2 Silent p.I1442I 0.27 TCGA-QK-A6VB-01 11 66613501 66613501 G A RCE1 Missense_Mutation p.G309S 0.23 tolerated(0.33) benign(0.032) TCGA-QK-A6VB-01 11 66807584 66807584 G T SYT12 Missense_Mutation p.K177N 0.10 deleterious(0) benign(0.092) TCGA-QK-A6VB-01 11 67077586 67077587 - A SSH3 Frame_Shift_Ins p.H488Afs*5 0.31 TCGA-QK-A6VB-01 11 67161083 67161083 T C RAD9A Splice_Site p.X117_splice 0.66 TCGA-QK-A6VB-01 11 67220087 67220087 C A GPR152 Missense_Mutation p.V37L 0.25 tolerated(0.13) benign(0.037) TCGA-QK-A6VB-01 11 71723995 71723995 C A NUMA1 Missense_Mutation p.K1518N 0.28 probably_damaging(0.999) TCGA-QK-A6VB-01 11 73716905 73716905 T C UCP3 Silent p.T137T 0.30 TCGA-QK-A6VB-01 11 7531294 7531294 C T OLFML1 Missense_Mutation p.P362S 0.36 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 11 7690551 7690552 - T CYB5R2 Frame_Shift_Ins p.N91Kfs*8 0.12 TCGA-QK-A6VB-01 11 77830229 77830229 T C ALG8 Missense_Mutation p.Q182R 0.23 deleterious(0.04) benign(0.084) TCGA-QK-A6VB-01 11 78204128 78204128 C T NARS2 Missense_Mutation p.S268N 0.22 tolerated(0.35) benign(0.031) TCGA-QK-A6VB-01 11 804233 804233 G A PIDD Silent p.H52H 0.16 TCGA-QK-A6VB-01 11 92532716 92532716 C A FAT3 Silent p.V2179V 0.20 TCGA-QK-A6VB-01 11 94533350 94533351 - T AMOTL1 Frame_Shift_Ins p.Y334Lfs*3 0.21 TCGA-QK-A6VB-01 11 9549231 9549231 G C ZNF143 3'UTR 0.31 TCGA-QK-A6VB-01 12 103352503 103352503 C T ASCL1 Missense_Mutation p.R161C 0.39 deleterious(0) probably_damaging(0.989) TCGA-QK-A6VB-01 12 110232202 110232202 C T TRPV4 Missense_Mutation p.V475M 0.43 deleterious(0.04) probably_damaging(0.985) TCGA-QK-A6VB-01 12 110252320 110252320 C T TRPV4 Silent p.S94S 0.23 TCGA-QK-A6VB-01 12 111884578 111884578 G A SH2B3 Missense_Mutation p.A252T 0.08 tolerated(0.76) benign(0.094) TCGA-QK-A6VB-01 12 120942767 120942767 C T COQ5 Missense_Mutation p.R234Q 0.40 deleterious(0) probably_damaging(0.987) TCGA-QK-A6VB-01 12 121947745 121947747 CTC - KDM2B In_Frame_Del p.E424del 0.31 TCGA-QK-A6VB-01 12 123213948 123213948 C T HCAR1 Missense_Mutation p.M313I 0.23 tolerated(0.53) benign(0) TCGA-QK-A6VB-01 12 12483053 12483053 C T MANSC1 Missense_Mutation p.V402I 0.42 tolerated(0.29) benign(0.017) TCGA-QK-A6VB-01 12 131476934 131476934 C A GPR133 Silent p.T321T 0.10 TCGA-QK-A6VB-01 12 14947541 14947541 A G WBP11 Silent p.R217R 0.20 TCGA-QK-A6VB-01 12 26572134 26572134 T G ITPR2 Missense_Mutation p.I2320L 0.24 tolerated(0.21) benign(0.05) TCGA-QK-A6VB-01 12 27951119 27951120 - A KLHL42 3'UTR 0.38 TCGA-QK-A6VB-01 12 34179015 34179015 G A ALG10 Missense_Mutation p.C196Y 0.44 tolerated(0.06) possibly_damaging(0.566) TCGA-QK-A6VB-01 12 42778764 42778764 C A PPHLN1 Silent p.S178S 0.09 TCGA-QK-A6VB-01 12 50026874 50026874 G A PRPF40B Nonsense_Mutation p.W142* 0.20 TCGA-QK-A6VB-01 12 50189460 50189461 - C NCKAP5L Frame_Shift_Ins p.A728Gfs*82 0.17 TCGA-QK-A6VB-01 12 51748216 51748216 C T GALNT6 Missense_Mutation p.A606T 0.08 tolerated(0.58) benign(0.004) TCGA-QK-A6VB-01 12 52845356 52845356 G A KRT6B Silent p.T169T 0.09 TCGA-QK-A6VB-01 12 54379591 54379591 G A HOXC10 Missense_Mutation p.R183H 0.36 tolerated(0.06) benign(0.101) TCGA-QK-A6VB-01 12 56600206 56600206 C A RNF41 3'UTR 0.21 TCGA-QK-A6VB-01 12 57457851 57457851 T C TMEM194A Intron 0.12 TCGA-QK-A6VB-01 12 57648753 57648753 C A R3HDM2 Missense_Mutation p.G912W 0.19 deleterious(0) possibly_damaging(0.759) TCGA-QK-A6VB-01 12 67699818 67699818 T C CAND1 Silent p.L790L 0.24 TCGA-QK-A6VB-01 12 6781536 6781536 G A ZNF384 Silent p.S358S 0.42 TCGA-QK-A6VB-01 12 70049362 70049362 G - BEST3 Frame_Shift_Del p.R445Gfs*40 0.32 TCGA-QK-A6VB-01 12 71523156 71523156 A T TSPAN8 Missense_Mutation p.N205K 0.16 deleterious(0.05) benign(0.114) TCGA-QK-A6VB-01 12 91348252 91348252 C A CCER1 Missense_Mutation p.G90W 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-QK-A6VB-01 12 99007664 99007664 C A IKBIP Missense_Mutation p.S251I 0.25 deleterious(0.01) benign(0.347) TCGA-QK-A6VB-01 12 99053045 99053045 T C APAF1 Missense_Mutation p.F212L 0.16 tolerated(0.56) benign(0.003) TCGA-QK-A6VB-01 12 994623 994623 C A WNK1 Silent p.S1551S 0.24 TCGA-QK-A6VB-01 13 21205180 21205180 A - IFT88 Frame_Shift_Del p.K453Rfs*5 0.47 TCGA-QK-A6VB-01 13 25341481 25341481 A G RNF17 Missense_Mutation p.T68A 0.54 deleterious_low_confidence(0.04) possibly_damaging(0.899) TCGA-QK-A6VB-01 13 32808875 32808875 G T FRY Nonsense_Mutation p.G1898* 0.08 TCGA-QK-A6VB-01 13 33628232 33628232 A G KL Missense_Mutation p.H383R 0.03 tolerated(0.59) benign(0.005) TCGA-QK-A6VB-01 13 33684168 33684168 G - STARD13 Frame_Shift_Del p.S964Qfs*4 0.50 TCGA-QK-A6VB-01 13 35615073 35615073 G A NBEA Missense_Mutation p.V100I 0.08 deleterious(0) probably_damaging(0.994) TCGA-QK-A6VB-01 13 43643069 43643069 G A DNAJC15 Missense_Mutation p.R55H 0.78 tolerated(0.08) probably_damaging(0.999) TCGA-QK-A6VB-01 13 45563305 45563305 C T NUFIP1 Silent p.A89A 0.41 TCGA-QK-A6VB-01 13 46541882 46541882 C G ZC3H13 Missense_Mutation p.E1360Q 0.93 unknown(0) TCGA-QK-A6VB-01 14 101201238 101201238 C T DLK1 3'UTR 0.08 TCGA-QK-A6VB-01 14 105411586 105411586 A G AHNAK2 Missense_Mutation p.M3401T 0.39 benign(0.346) TCGA-QK-A6VB-01 14 105412695 105412695 G - AHNAK2 Frame_Shift_Del p.S3032Lfs*13 0.19 TCGA-QK-A6VB-01 14 106926491 106926491 G A IGHV3-43 Silent p.V17V 0.14 TCGA-QK-A6VB-01 14 21833045 21833045 T C SUPT16H Missense_Mutation p.K392E 0.23 tolerated(0.36) benign(0.023) TCGA-QK-A6VB-01 14 22102238 22102238 G A OR10G2 Missense_Mutation p.T254I 0.48 tolerated(0.33) probably_damaging(1) TCGA-QK-A6VB-01 14 24614653 24614653 C G PSME2 Missense_Mutation p.D56H 0.19 deleterious(0.03) possibly_damaging(0.548) TCGA-QK-A6VB-01 14 24709778 24709778 G T TINF2 Missense_Mutation p.P303H 0.08 tolerated_low_confidence(0.12) probably_damaging(0.95) TCGA-QK-A6VB-01 14 24836273 24836273 C T NFATC4 Missense_Mutation p.L5F 0.07 unknown(0) TCGA-QK-A6VB-01 14 28733883 28733883 G C BNIP3P1 RNA 0.48 TCGA-QK-A6VB-01 14 31828251 31828251 G A HEATR5A Missense_Mutation p.A402V 0.17 tolerated(0.33) benign(0.007) TCGA-QK-A6VB-01 14 51081185 51081185 G A ATL1 Missense_Mutation p.G273D 0.05 deleterious(0) probably_damaging(0.998) TCGA-QK-A6VB-01 14 59967980 59967980 A G JKAMP Missense_Mutation p.I238V 0.46 tolerated(0.93) benign(0.008) TCGA-QK-A6VB-01 14 64898311 64898311 C T MTHFD1 Missense_Mutation p.A458V 0.23 deleterious(0) probably_damaging(0.975) TCGA-QK-A6VB-01 14 71197533 71197533 C T MAP3K9 Missense_Mutation p.R974H 0.52 tolerated(0.08) probably_damaging(0.998) TCGA-QK-A6VB-01 14 73408516 73408516 G A DCAF4 Missense_Mutation p.V139I 0.15 tolerated(0.23) benign(0.002) TCGA-QK-A6VB-01 14 75266069 75266069 C T YLPM1 Nonsense_Mutation p.R1357* 0.09 TCGA-QK-A6VB-01 14 78325515 78325515 C A ADCK1 Missense_Mutation p.L106M 0.14 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 14 91925064 91925064 T - SMEK1 3'UTR 0.26 TCGA-QK-A6VB-01 14 93185102 93185102 A G LGMN Missense_Mutation p.Y76H 0.16 tolerated(0.26) benign(0.003) TCGA-QK-A6VB-01 14 94568967 94568967 G A IFI27L1 3'UTR 0.28 TCGA-QK-A6VB-01 15 101586254 101586254 C T LRRK1 Missense_Mutation p.A1011V 0.07 tolerated(0.56) benign(0.062) TCGA-QK-A6VB-01 15 28447555 28447555 C A HERC2 Missense_Mutation p.R2473M 0.38 benign(0.169) TCGA-QK-A6VB-01 15 31776656 31776656 C T OTUD7A Missense_Mutation p.G541D 0.18 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 15 40698035 40698035 A G IVD Missense_Mutation p.T6A 0.22 tolerated_low_confidence(0.4) benign(0.004) TCGA-QK-A6VB-01 15 44085881 44085881 C A SERF2 Missense_Mutation p.P75H 0.31 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-QK-A6VB-01 15 44907702 44907702 C T SPG11 Missense_Mutation p.R966H 0.20 tolerated(0.57) benign(0.004) TCGA-QK-A6VB-01 15 62209646 62209646 T C VPS13C Missense_Mutation p.Y2650C 0.22 tolerated(0.18) benign(0.013) TCGA-QK-A6VB-01 15 65226380 65226380 G T ANKDD1A Missense_Mutation p.E271D 0.19 tolerated(0.26) benign(0.029) TCGA-QK-A6VB-01 15 74560687 74560687 C T CCDC33 Missense_Mutation p.T145I 0.34 tolerated(0.19) benign(0.105) TCGA-QK-A6VB-01 15 75185033 75185033 C T MPI Missense_Mutation p.P126L 0.54 deleterious(0) probably_damaging(0.995) TCGA-QK-A6VB-01 15 78453976 78453976 C T IDH3A Missense_Mutation p.R115C 0.27 deleterious(0) probably_damaging(0.926) TCGA-QK-A6VB-01 15 80137515 80137515 T C MTHFS 3'UTR 0.65 TCGA-QK-A6VB-01 15 81295526 81295526 G A MESDC1 Missense_Mutation p.C305Y 0.40 tolerated(0.31) benign(0.215) TCGA-QK-A6VB-01 15 81578132 81578132 T C IL16 Silent p.G431G 0.12 TCGA-QK-A6VB-01 15 82564107 82564107 A - FAM154B Frame_Shift_Del p.G75Efs*35 0.18 TCGA-QK-A6VB-01 15 89381922 89381922 C - ACAN Frame_Shift_Del p.Q35Nfs*5 0.17 TCGA-QK-A6VB-01 15 89872299 89872299 C T POLG Missense_Mutation p.A300T 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-QK-A6VB-01 15 90631934 90631934 C T IDH2 Missense_Mutation p.R140Q 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-QK-A6VB-01 15 91479199 91479200 AG - UNC45A Frame_Shift_Del p.E80Gfs*6 0.30 TCGA-QK-A6VB-01 15 92706187 92706187 A G SLCO3A1 Missense_Mutation p.Y652C 0.44 deleterious(0.04) probably_damaging(0.968) TCGA-QK-A6VB-01 16 14341240 14341240 C T MKL2 Intron 0.14 TCGA-QK-A6VB-01 16 1478413 1478413 C T C16orf91 Missense_Mutation p.A80T 0.14 deleterious_low_confidence(0.02) benign(0.01) TCGA-QK-A6VB-01 16 1559928 1559928 G A TELO2 Silent p.A835A 0.56 TCGA-QK-A6VB-01 16 1989029 1989029 C T MSRB1 3'UTR 0.47 TCGA-QK-A6VB-01 16 20808388 20808388 G A ACSM3 3'UTR 0.38 TCGA-QK-A6VB-01 16 20808396 20808396 C T ACSM3 3'UTR 0.33 TCGA-QK-A6VB-01 16 20981271 20981271 G A DNAH3 Silent p.L2767L 0.18 TCGA-QK-A6VB-01 16 2231476 2231476 G A CASKIN1 Silent p.I631I 0.46 TCGA-QK-A6VB-01 16 2258661 2258661 C A MLST8 Intron 0.07 TCGA-QK-A6VB-01 16 2260807 2260807 G A BRICD5 Missense_Mutation p.R10C 0.20 deleterious(0.05) possibly_damaging(0.649) TCGA-QK-A6VB-01 16 23647099 23647099 G A PALB2 Silent p.S256S 0.20 TCGA-QK-A6VB-01 16 27454418 27454418 G C IL21R Missense_Mutation p.R163P 0.10 deleterious(0.04) possibly_damaging(0.629) TCGA-QK-A6VB-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.10 TCGA-QK-A6VB-01 16 29821459 29821459 A G MAZ 3'UTR 0.14 TCGA-QK-A6VB-01 16 30005313 30005313 G T HIRIP3 Missense_Mutation p.R385S 0.24 deleterious(0.02) possibly_damaging(0.519) TCGA-QK-A6VB-01 16 30723592 30723592 C T SRCAP Missense_Mutation p.P609S 0.05 unknown(0) TCGA-QK-A6VB-01 16 30978857 30978857 C A SETD1A Silent p.A906A 0.21 TCGA-QK-A6VB-01 16 31094295 31094295 C T ZNF646 Missense_Mutation p.A1794V 0.19 tolerated_low_confidence(0.05) benign(0.001) TCGA-QK-A6VB-01 16 31927006 31927008 TTA - ZNF267 In_Frame_Del p.I480del 0.57 TCGA-QK-A6VB-01 16 5094508 5094508 G A C16orf89 3'UTR 0.22 TCGA-QK-A6VB-01 16 5125391 5125391 C - ALG1 Frame_Shift_Del p.P133Qfs*59 0.11 TCGA-QK-A6VB-01 16 56441908 56441908 C T AMFR Missense_Mutation p.G212R 0.12 deleterious(0) probably_damaging(0.947) TCGA-QK-A6VB-01 16 67693883 67693883 C A ACD Silent p.G141G 0.49 TCGA-QK-A6VB-01 16 69148807 69148807 G A HAS3 Missense_Mutation p.A434T 0.35 deleterious(0.05) benign(0.006) TCGA-QK-A6VB-01 16 71894095 71894095 C T ZNF821 Silent p.R355R 0.23 TCGA-QK-A6VB-01 16 81208415 81208415 G T PKD1L2 Silent p.L152L 0.25 TCGA-QK-A6VB-01 16 83711849 83711849 C T CDH13 Silent p.L488L 0.42 TCGA-QK-A6VB-01 16 83941859 83941859 T C MLYCD Missense_Mutation p.L257P 0.19 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 16 8900255 8900255 C T PMM2 Missense_Mutation p.P113L 0.43 deleterious(0) probably_damaging(0.984) TCGA-QK-A6VB-01 16 89346491 89346491 C T ANKRD11 Silent p.A2153A 0.43 TCGA-QK-A6VB-01 17 10247397 10247397 C A MYH13 Missense_Mutation p.E538D 0.23 deleterious(0) probably_damaging(0.989) TCGA-QK-A6VB-01 17 11881757 11881759 CTC - ZNF18 In_Frame_Del p.E389del 0.47 TCGA-QK-A6VB-01 17 15942951 15942951 C A NCOR1 Missense_Mutation p.G2251C 0.44 possibly_damaging(0.794) TCGA-QK-A6VB-01 17 16024504 16024504 G A NCOR1 Nonsense_Mutation p.R572* 0.20 TCGA-QK-A6VB-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.35 TCGA-QK-A6VB-01 17 18814458 18814458 G A PRPSAP2 Silent p.V209V 0.24 TCGA-QK-A6VB-01 17 20135612 20135612 G A SPECC1 Missense_Mutation p.V749M 0.43 deleterious(0.02) probably_damaging(0.928) TCGA-QK-A6VB-01 17 25958323 25958323 T C LGALS9 Missense_Mutation p.L11P 0.10 tolerated(0.11) benign(0.273) TCGA-QK-A6VB-01 17 27944056 27944056 T C CORO6 Missense_Mutation p.N253S 0.09 tolerated(0.15) benign(0.026) TCGA-QK-A6VB-01 17 29848958 29848958 C T RAB11FIP4 Missense_Mutation p.R262W 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-QK-A6VB-01 17 30192412 30192412 A G UTP6 Silent p.L537L 0.04 TCGA-QK-A6VB-01 17 30320994 30320994 A T SUZ12 Missense_Mutation p.K468N 0.16 deleterious(0) possibly_damaging(0.783) TCGA-QK-A6VB-01 17 32906089 32906090 - C C17orf102 Frame_Shift_Ins p.H71Afs*68 0.31 TCGA-QK-A6VB-01 17 35872691 35872691 C - DUSP14 Frame_Shift_Del p.T107Pfs*9 0.31 TCGA-QK-A6VB-01 17 37026347 37026347 T C LASP1 5'UTR 0.26 TCGA-QK-A6VB-01 17 37235491 37235491 A G PLXDC1 Intron 0.22 TCGA-QK-A6VB-01 17 3769176 3769176 G A CAMKK1 3'UTR 0.21 TCGA-QK-A6VB-01 17 38568020 38568020 A G TOP2A Silent p.D280D 0.11 TCGA-QK-A6VB-01 17 40315821 40315821 G A KCNH4 Silent p.S760S 0.25 TCGA-QK-A6VB-01 17 40336494 40336494 G A HCRT Missense_Mutation p.A25V 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-QK-A6VB-01 17 4111229 4111229 T C ANKFY1 Missense_Mutation p.Q286R 0.09 tolerated(0.14) possibly_damaging(0.71) TCGA-QK-A6VB-01 17 41477713 41477713 C - ARL4D 3'UTR 0.34 TCGA-QK-A6VB-01 17 42239367 42239368 - G C17orf53 3'UTR 0.23 TCGA-QK-A6VB-01 17 42390845 42390845 G T RUNDC3A Silent p.T144T 0.17 TCGA-QK-A6VB-01 17 42883140 42883140 G T GJC1 Missense_Mutation p.H16N 0.40 deleterious(0) probably_damaging(0.982) TCGA-QK-A6VB-01 17 43339420 43339420 C T SPATA32 5'UTR 0.38 TCGA-QK-A6VB-01 17 4788779 4788779 G A MINK1 Silent p.V170V 0.08 TCGA-QK-A6VB-01 17 4802766 4802766 G A CHRNE Silent p.R343R 0.60 TCGA-QK-A6VB-01 17 48245065 48245066 - C SGCA Frame_Shift_Ins p.E96Rfs*9 0.38 TCGA-QK-A6VB-01 17 48278809 48278809 G A COL1A1 Silent p.G22G 0.09 TCGA-QK-A6VB-01 17 48605577 48605577 G A MYCBPAP Missense_Mutation p.V828M 0.50 deleterious(0.01) benign(0.047) TCGA-QK-A6VB-01 17 48824016 48824016 G T LUC7L3 Missense_Mutation p.R364M 0.16 deleterious_low_confidence(0) unknown(0) TCGA-QK-A6VB-01 17 4884557 4884557 A C CAMTA2 Silent p.A244A 0.08 TCGA-QK-A6VB-01 17 5074001 5074001 C T USP6 Missense_Mutation p.R1249W 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.67) TCGA-QK-A6VB-01 17 55950170 55950170 G A CUEDC1 Missense_Mutation p.P213L 0.24 tolerated(0.34) benign(0.15) TCGA-QK-A6VB-01 17 57970583 57970583 C - RPS6KB1 Frame_Shift_Del p.P14Rfs*17 0.32 TCGA-QK-A6VB-01 17 59534957 59534957 G T TBX4 Missense_Mutation p.E82D 0.10 deleterious(0.05) possibly_damaging(0.7) TCGA-QK-A6VB-01 17 66265390 66265390 C T SLC16A6 Silent p.P473P 0.25 TCGA-QK-A6VB-01 17 72368024 72368024 A G GPR142 Missense_Mutation p.Q225R 0.46 tolerated(0.18) benign(0.009) TCGA-QK-A6VB-01 17 72945430 72945430 C T OTOP3 Silent p.I570I 0.41 TCGA-QK-A6VB-01 17 72960578 72960578 C A HID1 Missense_Mutation p.K72N 0.50 deleterious(0) probably_damaging(0.931) TCGA-QK-A6VB-01 17 7358987 7358987 G A CHRNB1 Intron 0.44 TCGA-QK-A6VB-01 17 73830723 73830725 CTT - UNC13D In_Frame_Del p.K689del 0.18 TCGA-QK-A6VB-01 17 73836377 73836377 G - UNC13D Frame_Shift_Del p.L263Wfs*65 0.12 TCGA-QK-A6VB-01 17 73838636 73838637 - C UNC13D Frame_Shift_Ins p.S150Qfs*44 0.13 TCGA-QK-A6VB-01 17 7556715 7556716 - T ATP1B2 Frame_Shift_Ins p.Y48Lfs*42 0.13 TCGA-QK-A6VB-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.50 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.46 TCGA-QK-A6VB-01 17 7623122 7623122 C T DNAH2 Missense_Mutation p.R24W 0.53 benign(0.109) TCGA-QK-A6VB-01 17 76568838 76568838 G T DNAH17 Missense_Mutation p.L162M 0.18 probably_damaging(0.998) TCGA-QK-A6VB-01 17 76794995 76794995 C T USP36 Missense_Mutation p.G1079R 0.17 deleterious(0) probably_damaging(0.996) TCGA-QK-A6VB-01 17 7755268 7755268 G T KDM6B Splice_Site p.X1389_splice 0.24 TCGA-QK-A6VB-01 17 77758304 77758304 G T CBX2 Missense_Mutation p.Q354H 0.29 deleterious(0) probably_damaging(0.997) TCGA-QK-A6VB-01 17 78039387 78039387 C T CCDC40 Missense_Mutation p.A515V 0.48 tolerated(0.09) benign(0.185) TCGA-QK-A6VB-01 17 79182779 79182779 C A AZI1 Missense_Mutation p.R74I 0.43 deleterious(0) probably_damaging(0.946) TCGA-QK-A6VB-01 17 79826686 79826687 - G ARHGDIA 3'UTR 0.36 TCGA-QK-A6VB-01 17 80059546 80059546 G - FASN 5'Flank 0.14 TCGA-QK-A6VB-01 17 80211113 80211113 C T CSNK1D Missense_Mutation p.R115H 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-QK-A6VB-01 17 8791556 8791556 C T PIK3R5 Silent p.T516T 0.21 TCGA-QK-A6VB-01 18 21112161 21112161 G A NPC1 3'UTR 0.26 TCGA-QK-A6VB-01 18 29027795 29027795 G T DSG3 5'UTR 0.13 TCGA-QK-A6VB-01 18 30091887 30091887 G A WBP11P1 RNA 0.08 TCGA-QK-A6VB-01 18 33706880 33706880 G - SLC39A6 Frame_Shift_Del p.Q31Rfs*52 0.19 TCGA-QK-A6VB-01 18 45566519 45566519 C - ZBTB7C Frame_Shift_Del p.P321Lfs*18 0.37 TCGA-QK-A6VB-01 18 46385823 46385823 C T CTIF Missense_Mutation p.R566W 0.21 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 18 51013326 51013326 A G DCC Missense_Mutation p.Q1299R 0.32 tolerated(0.1) benign(0.008) TCGA-QK-A6VB-01 18 56246910 56246910 G A ALPK2 Silent p.F366F 0.59 TCGA-QK-A6VB-01 18 61264495 61264495 C A SERPINB13 Silent p.A358A 0.28 TCGA-QK-A6VB-01 18 63491964 63491964 C T CDH7 Missense_Mutation p.A293V 0.27 tolerated(0.18) benign(0.001) TCGA-QK-A6VB-01 18 67869207 67869207 T - RTTN Frame_Shift_Del p.N137Tfs*5 0.21 TCGA-QK-A6VB-01 18 74091541 74091541 C - ZNF516 Frame_Shift_Del p.M844Cfs*131 0.28 TCGA-QK-A6VB-01 19 10395480 10395480 G T ICAM1 Missense_Mutation p.R401M 0.10 tolerated(0.09) benign(0.26) TCGA-QK-A6VB-01 19 10625610 10625610 G A S1PR5 Silent p.R26R 0.40 TCGA-QK-A6VB-01 19 10671086 10671086 A G KRI1 Silent p.D240D 0.07 TCGA-QK-A6VB-01 19 10673446 10673446 G A KRI1 Silent p.Y120Y 0.24 TCGA-QK-A6VB-01 19 10789317 10789317 C T ILF3 Silent p.D196D 0.29 TCGA-QK-A6VB-01 19 11350481 11350481 G A C19orf80 Silent p.T56T 0.14 TCGA-QK-A6VB-01 19 11618561 11618562 AC - ECSIT Frame_Shift_Del p.Y301Lfs*7 0.23 TCGA-QK-A6VB-01 19 12767812 12767812 C T MAN2B1 Missense_Mutation p.C493Y 0.09 deleterious(0) probably_damaging(0.986) TCGA-QK-A6VB-01 19 12830100 12830100 G A TNPO2 Silent p.F50F 0.30 TCGA-QK-A6VB-01 19 12864086 12864086 C T BEST2 Silent p.T55T 0.15 TCGA-QK-A6VB-01 19 14000543 14000543 C T C19orf57 Missense_Mutation p.A376T 0.28 tolerated(0.07) benign(0.001) TCGA-QK-A6VB-01 19 1475023 1475023 C A C19orf25 3'UTR 0.23 TCGA-QK-A6VB-01 19 15483732 15483733 - C AKAP8 Frame_Shift_Ins p.A264Gfs*5 0.29 TCGA-QK-A6VB-01 19 17309065 17309065 G A MYO9B Missense_Mutation p.A1396T 0.12 tolerated(0.71) benign(0.001) TCGA-QK-A6VB-01 19 18254702 18254702 G T MAST3 Missense_Mutation p.E794D 0.17 tolerated(0.14) benign(0.028) TCGA-QK-A6VB-01 19 18964096 18964096 C T UPF1 Missense_Mutation p.R365W 0.19 deleterious(0.02) benign(0.045) TCGA-QK-A6VB-01 19 1953390 1953390 C T CSNK1G2 Intron 0.17 TCGA-QK-A6VB-01 19 2037829 2037829 C A MKNK2 3'UTR 0.52 TCGA-QK-A6VB-01 19 22363455 22363455 T C ZNF676 Missense_Mutation p.H355R 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-QK-A6VB-01 19 22779092 22779092 C T CTC-457E21.3 RNA 0.55 TCGA-QK-A6VB-01 19 22846645 22846646 - A ZNF492 Frame_Shift_Ins p.N61Kfs*12 0.55 TCGA-QK-A6VB-01 19 2291274 2291274 G A LINGO3 Missense_Mutation p.R168C 0.06 deleterious(0) probably_damaging(0.98) TCGA-QK-A6VB-01 19 33372750 33372750 C A CEP89 Missense_Mutation p.R712I 0.19 deleterious(0) probably_damaging(0.967) TCGA-QK-A6VB-01 19 34984431 34984431 G A WTIP Missense_Mutation p.G312D 0.19 deleterious(0) probably_damaging(0.995) TCGA-QK-A6VB-01 19 36277884 36277884 C T ARHGAP33 Missense_Mutation p.P677S 0.27 tolerated_low_confidence(0.21) probably_damaging(0.995) TCGA-QK-A6VB-01 19 38780887 38780887 C T SPINT2 Missense_Mutation p.R174C 0.15 tolerated(0.11) possibly_damaging(0.86) TCGA-QK-A6VB-01 19 39114838 39114838 G A EIF3K Splice_Site p.X93_splice 0.11 TCGA-QK-A6VB-01 19 39398083 39398083 C A NFKBIB Silent p.A251A 0.43 TCGA-QK-A6VB-01 19 3942174 3942174 C - NMRK2 Frame_Shift_Del p.S201Pfs*64 0.37 TCGA-QK-A6VB-01 19 39870622 39870622 A G SAMD4B Missense_Mutation p.Q516R 0.50 deleterious(0) possibly_damaging(0.77) TCGA-QK-A6VB-01 19 41307129 41307129 C T EGLN2 Missense_Mutation p.R218C 0.38 deleterious(0.03) possibly_damaging(0.642) TCGA-QK-A6VB-01 19 44571320 44571321 - A ZNF223 Frame_Shift_Ins p.N449Kfs*11 0.24 TCGA-QK-A6VB-01 19 44590835 44590835 G A ZNF284 Missense_Mutation p.D402N 0.09 tolerated(0.05) possibly_damaging(0.479) TCGA-QK-A6VB-01 19 45862016 45862017 - T ERCC2 Intron 0.35 TCGA-QK-A6VB-01 19 46215882 46215882 G - FBXO46 Frame_Shift_Del p.P291Lfs*80 0.41 TCGA-QK-A6VB-01 19 48922549 48922549 C T GRIN2D Silent p.A598A 0.06 TCGA-QK-A6VB-01 19 48922967 48922967 G A GRIN2D Missense_Mutation p.A663T 0.22 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 19 49167847 49167847 C A NTN5 Missense_Mutation p.R270M 0.09 deleterious(0.03) possibly_damaging(0.551) TCGA-QK-A6VB-01 19 49671906 49671906 G T TRPM4 Missense_Mutation p.D237Y 0.55 deleterious(0) probably_damaging(0.914) TCGA-QK-A6VB-01 19 50839957 50839957 A G NAPSB RNA 0.48 TCGA-QK-A6VB-01 19 50962564 50962564 G A MYBPC2 Splice_Site p.X931_splice 0.44 TCGA-QK-A6VB-01 19 52091373 52091373 A G ZNF175 Missense_Mutation p.N597D 0.14 tolerated(0.09) possibly_damaging(0.634) TCGA-QK-A6VB-01 19 52538321 52538321 T - ZNF432 Frame_Shift_Del p.N204Tfs*45 0.31 TCGA-QK-A6VB-01 19 52825659 52825659 C A ZNF480 Missense_Mutation p.L386I 0.19 deleterious(0) probably_damaging(0.998) TCGA-QK-A6VB-01 19 53058406 53058406 A G ZNF808 Missense_Mutation p.Q746R 0.10 tolerated(0.66) benign(0.039) TCGA-QK-A6VB-01 19 56466043 56466043 G A NLRP8 Missense_Mutation p.A207T 0.38 deleterious(0.01) benign(0.01) TCGA-QK-A6VB-01 19 57175052 57175052 T C ZNF835 Silent p.P505P 0.10 TCGA-QK-A6VB-01 19 57866668 57866668 G A ZNF304 Intron 0.35 TCGA-QK-A6VB-01 19 57910460 57910460 A G ZNF548 Missense_Mutation p.M281V 0.44 tolerated(1) benign(0.001) TCGA-QK-A6VB-01 19 58864812 58864812 C T A1BG 5'UTR 0.29 TCGA-QK-A6VB-01 19 6415897 6415898 - C KHSRP Frame_Shift_Ins p.P537Afs*25 0.25 TCGA-QK-A6VB-01 19 6475575 6475575 C T DENND1C Missense_Mutation p.E283K 0.15 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 19 7605872 7605872 C A PNPLA6 Missense_Mutation p.L296M 0.15 deleterious(0) probably_damaging(0.991) TCGA-QK-A6VB-01 19 8398062 8398062 C T KANK3 Missense_Mutation p.R591H 0.49 tolerated(0.15) possibly_damaging(0.715) TCGA-QK-A6VB-01 19 8491643 8491643 C T MARCH2 Silent p.C109C 0.15 TCGA-QK-A6VB-01 19 9965527 9965527 C A OLFM2 Missense_Mutation p.D234Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-QK-A6VB-01 1 110254902 110254902 T G GSTM5 5'UTR 0.05 TCGA-QK-A6VB-01 1 110883949 110883949 A T RBM15 Missense_Mutation p.K641M 0.19 deleterious(0) probably_damaging(0.956) TCGA-QK-A6VB-01 1 11090928 11090928 C T MASP2 Missense_Mutation p.G367S 0.26 deleterious(0.04) probably_damaging(0.989) TCGA-QK-A6VB-01 1 114242392 114242393 - T PHTF1 Frame_Shift_Ins p.P693Afs*3 0.24 TCGA-QK-A6VB-01 1 114310991 114310991 T - RSBN1 Frame_Shift_Del p.N560Ifs*42 0.39 TCGA-QK-A6VB-01 1 12409289 12409289 C T VPS13D Missense_Mutation p.R3097W 0.42 probably_damaging(0.994) TCGA-QK-A6VB-01 1 14106589 14106589 G A PRDM2 Missense_Mutation p.G767R 0.05 benign(0.394) TCGA-QK-A6VB-01 1 144915504 144915504 G C PDE4DIP Missense_Mutation p.H641D 0.06 deleterious(0) benign(0.396) TCGA-QK-A6VB-01 1 147092657 147092659 CAG - BCL9 In_Frame_Del p.A903del 0.23 TCGA-QK-A6VB-01 1 147408747 147408747 T - GPR89B Frame_Shift_Del p.F18Lfs*25 0.18 TCGA-QK-A6VB-01 1 152279854 152279854 G A FLG Missense_Mutation p.A2503V 0.21 probably_damaging(0.986) TCGA-QK-A6VB-01 1 153012586 153012586 T C SPRR2D 3'UTR 0.07 TCGA-QK-A6VB-01 1 153642700 153642700 G A ILF2 Silent p.D4D 0.22 TCGA-QK-A6VB-01 1 153903541 153903541 C A DENND4B Splice_Site p.X1333_splice 0.14 TCGA-QK-A6VB-01 1 155023188 155023188 C T DCST1 Silent p.P655P 0.25 TCGA-QK-A6VB-01 1 155300388 155300388 G A RUSC1 3'UTR 0.37 TCGA-QK-A6VB-01 1 156261316 156261316 C T TMEM79 Missense_Mutation p.A371V 0.07 tolerated(0.69) benign(0.015) TCGA-QK-A6VB-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.23 TCGA-QK-A6VB-01 1 160260441 160260441 G A COPA Silent p.P1161P 0.14 TCGA-QK-A6VB-01 1 162124229 162124229 G A NOS1AP Missense_Mutation p.S47N 0.49 deleterious(0.05) probably_damaging(0.934) TCGA-QK-A6VB-01 1 16332528 16332528 C A C1orf64 Missense_Mutation p.A66D 0.52 tolerated(0.08) possibly_damaging(0.714) TCGA-QK-A6VB-01 1 166990329 166990329 G T MAEL Missense_Mutation p.R350M 0.22 deleterious(0) possibly_damaging(0.847) TCGA-QK-A6VB-01 1 169513569 169513569 C T F5 Missense_Mutation p.R647H 0.34 tolerated(0.22) benign(0.023) TCGA-QK-A6VB-01 1 170689011 170689011 G A PRRX1 Missense_Mutation p.R129H 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-QK-A6VB-01 1 17316491 17316491 T C ATP13A2 Missense_Mutation p.D807G 0.81 tolerated(0.51) benign(0.002) TCGA-QK-A6VB-01 1 177226343 177226343 G T BRINP2 Missense_Mutation p.K164N 0.18 deleterious(0) probably_damaging(0.996) TCGA-QK-A6VB-01 1 17990994 17990994 C T ARHGEF10L Silent p.P971P 0.26 TCGA-QK-A6VB-01 1 182555660 182555660 C T RNASEL Silent p.T94T 0.46 TCGA-QK-A6VB-01 1 186276124 186276124 A C PRG4 Missense_Mutation p.T425P 0.16 unknown(0) TCGA-QK-A6VB-01 1 197094316 197094316 G A ASPM Missense_Mutation p.T981I 0.15 tolerated(0.11) benign(0.018) TCGA-QK-A6VB-01 1 198718660 198718660 C A PTPRC Silent p.I1018I 0.09 TCGA-QK-A6VB-01 1 201352259 201352259 G A LAD1 Silent p.H443H 0.22 TCGA-QK-A6VB-01 1 203466160 203466160 C T OPTC Missense_Mutation p.T96M 0.41 tolerated(0.31) benign(0.007) TCGA-QK-A6VB-01 1 220754423 220754423 T C MARK1 Missense_Mutation p.I91T 0.22 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 1 225702506 225702506 G T ENAH Missense_Mutation p.P337H 0.17 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-QK-A6VB-01 1 228109526 228109526 G A WNT9A Missense_Mutation p.A264V 0.27 tolerated(0.26) probably_damaging(0.918) TCGA-QK-A6VB-01 1 236388426 236388426 G A ERO1LB Missense_Mutation p.H356Y 0.17 deleterious(0) probably_damaging(0.974) TCGA-QK-A6VB-01 1 237659941 237659941 G A RYR2 Missense_Mutation p.A698T 0.19 probably_damaging(0.93) TCGA-QK-A6VB-01 1 248059210 248059210 G T OR2W3 Missense_Mutation p.G108C 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-QK-A6VB-01 1 248789550 248789550 C T OR2T11 Missense_Mutation p.V294I 0.42 deleterious(0.02) benign(0.001) TCGA-QK-A6VB-01 1 27269437 27269437 C T NUDC Missense_Mutation p.R208W 0.28 deleterious(0.02) possibly_damaging(0.783) TCGA-QK-A6VB-01 1 27878049 27878049 G T AHDC1 Missense_Mutation p.P193H 0.26 tolerated_low_confidence(0.06) probably_damaging(0.95) TCGA-QK-A6VB-01 1 33954220 33954220 C T ZSCAN20 Silent p.A191A 0.24 TCGA-QK-A6VB-01 1 34312590 34312590 C T CSMD2 Missense_Mutation p.G270R 0.19 deleterious(0) probably_damaging(0.993) TCGA-QK-A6VB-01 1 36228057 36228057 C A CLSPN Missense_Mutation p.G257V 0.28 tolerated(0.25) possibly_damaging(0.598) TCGA-QK-A6VB-01 1 40922708 40922708 T C ZFP69B Missense_Mutation p.V102A 0.26 deleterious(0.03) benign(0.005) TCGA-QK-A6VB-01 1 43888902 43888902 C - SZT2 Frame_Shift_Del p.V726Cfs*41 0.25 TCGA-QK-A6VB-01 1 45474374 45474374 C A HECTD3 Splice_Site p.X358_splice 0.32 TCGA-QK-A6VB-01 1 46739344 46739344 G A RAD54L Missense_Mutation p.S512N 0.32 deleterious(0.01) benign(0.112) TCGA-QK-A6VB-01 1 54060231 54060232 - C GLIS1 Frame_Shift_Ins p.S117Ffs*15 0.21 TCGA-QK-A6VB-01 1 55545326 55545326 C T USP24 Missense_Mutation p.G2362D 0.11 tolerated(0.12) possibly_damaging(0.756) TCGA-QK-A6VB-01 1 55612663 55612663 C T USP24 Missense_Mutation p.R730H 0.13 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 1 6101896 6101896 G T KCNAB2 5'Flank 0.24 TCGA-QK-A6VB-01 1 6488424 6488424 G A ESPN Missense_Mutation p.A145T 0.52 deleterious(0) probably_damaging(0.979) TCGA-QK-A6VB-01 1 6528321 6528321 G A PLEKHG5 Missense_Mutation p.R938C 0.59 deleterious_low_confidence(0.02) benign(0.01) TCGA-QK-A6VB-01 1 67241982 67241982 G A TCTEX1D1 Missense_Mutation p.V78M 0.21 deleterious(0.04) benign(0.206) TCGA-QK-A6VB-01 1 71536591 71536591 C T ZRANB2 Missense_Mutation p.R201Q 0.56 deleterious(0.04) unknown(0) TCGA-QK-A6VB-01 1 75038930 75038930 C T C1orf173 Missense_Mutation p.A822T 0.28 tolerated(0.12) benign(0.019) TCGA-QK-A6VB-01 1 86210351 86210351 T C COL24A1 Missense_Mutation p.D1557G 0.07 deleterious(0) probably_damaging(0.964) TCGA-QK-A6VB-01 1 8930527 8930527 G T ENO1 Missense_Mutation p.P75H 0.10 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-QK-A6VB-01 1 907526 907526 T C PLEKHN1 Silent p.I287I 0.26 TCGA-QK-A6VB-01 1 92200471 92200473 AGG - TGFBR3 In_Frame_Del p.S143del 0.51 TCGA-QK-A6VB-01 20 13071733 13071733 A G SPTLC3 Missense_Mutation p.T204A 0.19 deleterious(0.02) benign(0.141) TCGA-QK-A6VB-01 20 13797860 13797860 T G NDUFAF5 3'UTR 0.18 TCGA-QK-A6VB-01 20 17610538 17610538 G A RRBP1 Silent p.H460H 0.12 TCGA-QK-A6VB-01 20 18541395 18541395 C T SEC23B 3'UTR 0.17 TCGA-QK-A6VB-01 20 20180466 20180466 G A C20orf26 Missense_Mutation p.V618M 0.17 deleterious(0) probably_damaging(0.997) TCGA-QK-A6VB-01 20 2774832 2774832 G T CPXM1 3'UTR 0.05 TCGA-QK-A6VB-01 20 3090766 3090766 G A UBOX5 Missense_Mutation p.R538W 0.05 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 20 3212126 3212126 G A SLC4A11 Silent p.R309R 0.32 TCGA-QK-A6VB-01 20 33298028 33298028 C A TP53INP2 Silent p.R194R 0.12 TCGA-QK-A6VB-01 20 35154314 35154314 C T DLGAP4 Nonsense_Mutation p.Q886* 0.20 TCGA-QK-A6VB-01 20 37524227 37524227 A T PPP1R16B Missense_Mutation p.E114V 0.41 tolerated(0.29) possibly_damaging(0.697) TCGA-QK-A6VB-01 20 398399 398399 A G RBCK1 Silent p.P95P 0.28 TCGA-QK-A6VB-01 20 39993776 39993776 C T EMILIN3 Silent p.V63V 0.09 TCGA-QK-A6VB-01 20 44527174 44527174 C A CTSA 3'UTR 0.64 TCGA-QK-A6VB-01 20 44533677 44533677 C A PLTP Silent p.R262R 0.12 TCGA-QK-A6VB-01 20 50139893 50139893 G T NFATC2 Missense_Mutation p.P296H 0.26 tolerated(0.1) benign(0.438) TCGA-QK-A6VB-01 20 54941215 54941215 G A FAM210B Missense_Mutation p.V151M 0.38 deleterious(0.01) probably_damaging(0.944) TCGA-QK-A6VB-01 20 55093327 55093327 G A RTFDC1 3'UTR 0.06 TCGA-QK-A6VB-01 20 60887724 60887724 T C LAMA5 Missense_Mutation p.Y3064C 0.17 possibly_damaging(0.668) TCGA-QK-A6VB-01 20 61526189 61526189 C T DIDO1 Silent p.E803E 0.18 TCGA-QK-A6VB-01 20 61598887 61598887 G A SLC17A9 3'UTR 0.39 TCGA-QK-A6VB-01 20 62328715 62328715 C - TNFRSF6B Frame_Shift_Del p.P155Qfs*101 0.22 TCGA-QK-A6VB-01 20 62669760 62669760 A G ZNF512B Intron 0.23 TCGA-QK-A6VB-01 20 8702998 8702998 C G PLCB1 Intron 0.17 TCGA-QK-A6VB-01 21 15323555 15323555 T C ANKRD20A11P Intron 0.16 TCGA-QK-A6VB-01 21 30309016 30309016 G A LTN1 Missense_Mutation p.R1542W 0.19 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 21 45194587 45194587 G T CSTB Silent p.A40A 0.21 TCGA-QK-A6VB-01 21 48078707 48078707 G T PRMT2 Missense_Mutation p.K235N 0.32 deleterious(0) probably_damaging(0.978) TCGA-QK-A6VB-01 22 24087058 24087058 G T ZNF70 Silent p.L90L 0.20 TCGA-QK-A6VB-01 22 31059498 31059498 G A DUSP18 Missense_Mutation p.H165Y 0.18 tolerated(0.5) benign(0.001) TCGA-QK-A6VB-01 22 31829860 31829860 C A DRG1 Missense_Mutation p.A336D 0.39 deleterious(0) probably_damaging(0.949) TCGA-QK-A6VB-01 22 32589331 32589331 T C RFPL2 Intron 0.18 TCGA-QK-A6VB-01 22 36722689 36722689 C T MYH9 Missense_Mutation p.G179D 0.31 probably_damaging(1) TCGA-QK-A6VB-01 22 40802507 40802507 G A SGSM3 Silent p.S342S 0.29 TCGA-QK-A6VB-01 22 50988067 50988068 - G KLHDC7B Frame_Shift_Ins p.F494Lfs*94 0.22 TCGA-QK-A6VB-01 2 10102641 10102642 - T GRHL1 Frame_Shift_Ins p.D245* 0.23 TCGA-QK-A6VB-01 2 101967419 101967419 T C CREG2 Missense_Mutation p.E280G 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-QK-A6VB-01 2 10580932 10580932 C T ODC1 Missense_Mutation p.S435N 0.13 tolerated(0.54) benign(0) TCGA-QK-A6VB-01 2 105896983 105896983 A G TGFBRAP1 Missense_Mutation p.V440A 0.14 tolerated(0.19) benign(0.04) TCGA-QK-A6VB-01 2 106498429 106498429 C T NCK2 Missense_Mutation p.T291M 0.23 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 2 108994806 108994806 G A SULT1C4 Missense_Mutation p.D5N 0.46 tolerated_low_confidence(0.22) benign(0.001) TCGA-QK-A6VB-01 2 111413465 111413465 A - BUB1 Frame_Shift_Del p.L576Wfs*47 0.21 TCGA-QK-A6VB-01 2 127827599 127827599 G A BIN1 Missense_Mutation p.T128M 0.37 deleterious(0.03) possibly_damaging(0.641) TCGA-QK-A6VB-01 2 128261070 128261070 C A IWS1 Missense_Mutation p.K434N 0.39 deleterious(0.04) benign(0.253) TCGA-QK-A6VB-01 2 141356335 141356336 - T LRP1B Frame_Shift_Ins p.N2353Kfs*36 0.19 TCGA-QK-A6VB-01 2 143718206 143718206 T C KYNU Missense_Mutation p.L199S 0.27 deleterious(0) probably_damaging(0.954) TCGA-QK-A6VB-01 2 15514777 15514777 C T NBAS Missense_Mutation p.V1220I 0.46 tolerated(0.08) benign(0.027) TCGA-QK-A6VB-01 2 158178245 158178247 CTT - ERMN In_Frame_Del p.K144del 0.24 TCGA-QK-A6VB-01 2 160128239 160128239 G T WDSUB1 Silent p.S248S 0.37 TCGA-QK-A6VB-01 2 162091951 162091951 A G TANK Silent p.Q400Q 0.18 TCGA-QK-A6VB-01 2 165378627 165378627 T C GRB14 Missense_Mutation p.M227V 0.36 tolerated(0.15) benign(0.001) TCGA-QK-A6VB-01 2 170031767 170031767 C T LRP2 Silent p.P3568P 0.09 TCGA-QK-A6VB-01 2 178080755 178080755 G A HNRNPA3 Missense_Mutation p.G131D 0.15 deleterious(0.02) probably_damaging(0.943) TCGA-QK-A6VB-01 2 179604446 179604446 T C TTN Missense_Mutation p.E4505G 0.47 TCGA-QK-A6VB-01 2 183070678 183070678 T C PDE1A Silent p.K313K 0.37 TCGA-QK-A6VB-01 2 185463638 185463638 C T ZNF804A 5'UTR 0.53 TCGA-QK-A6VB-01 2 191064837 191064837 A G C2orf88 Missense_Mutation p.Y84C 0.22 deleterious(0) probably_damaging(0.975) TCGA-QK-A6VB-01 2 198361716 198361716 A - HSPD1 Intron 0.36 TCGA-QK-A6VB-01 2 202141691 202141691 G A CASP8 Missense_Mutation p.G327R 0.10 tolerated(0.06) benign(0.025) TCGA-QK-A6VB-01 2 202622168 202622169 CT - ALS2 Frame_Shift_Del p.E476Gfs*71 0.24 TCGA-QK-A6VB-01 2 205829956 205829956 G T PARD3B Missense_Mutation p.D102Y 0.29 deleterious(0) probably_damaging(0.957) TCGA-QK-A6VB-01 2 209179974 209179974 A T PIKFYVE Silent p.S628S 0.34 TCGA-QK-A6VB-01 2 219128050 219128050 G A GPBAR1 Silent p.R201R 0.34 TCGA-QK-A6VB-01 2 220312872 220312872 C - SPEG Frame_Shift_Del p.T333Rfs*45 0.29 TCGA-QK-A6VB-01 2 223423242 223423242 G A SGPP2 Silent p.A275A 0.41 TCGA-QK-A6VB-01 2 224777016 224777016 T C WDFY1 Missense_Mutation p.H78R 0.06 tolerated(0.4) benign(0.045) TCGA-QK-A6VB-01 2 230744733 230744733 G A TRIP12 Silent p.A21A 0.39 TCGA-QK-A6VB-01 2 234112940 234112940 G A INPP5D Silent p.P1036P 0.41 TCGA-QK-A6VB-01 2 234749677 234749679 TTC - HJURP In_Frame_Del p.E583del 0.12 TCGA-QK-A6VB-01 2 235951474 235951474 C T SH3BP4 Silent p.S687S 0.53 TCGA-QK-A6VB-01 2 27121417 27121417 T C DPYSL5 Missense_Mutation p.V17A 0.09 deleterious(0) probably_damaging(0.993) TCGA-QK-A6VB-01 2 38537548 38537548 C T ATL2 Silent p.K282K 0.16 TCGA-QK-A6VB-01 2 55746892 55746892 C A CCDC104 5'UTR 0.12 TCGA-QK-A6VB-01 2 58388752 58388752 T C FANCL Missense_Mutation p.I314V 0.36 deleterious(0) probably_damaging(0.95) TCGA-QK-A6VB-01 2 62728295 62728295 C G TMEM17 3'UTR 0.47 TCGA-QK-A6VB-01 2 72740374 72740375 - A EXOC6B Frame_Shift_Ins p.V352Cfs*3 0.13 TCGA-QK-A6VB-01 2 74043174 74043175 - A C2orf78 Frame_Shift_Ins p.N610Kfs*4 0.10 TCGA-QK-A6VB-01 2 88885366 88885366 G T EIF2AK3 Missense_Mutation p.P548H 0.39 deleterious(0.02) benign(0.002) TCGA-QK-A6VB-01 2 9437559 9437559 A G ASAP2 Silent p.A110A 0.28 TCGA-QK-A6VB-01 2 98378554 98378554 G - TMEM131 Frame_Shift_Del p.C1612Afs*23 0.18 TCGA-QK-A6VB-01 2 99804703 99804704 TC - MRPL30 Frame_Shift_Del p.S39Kfs*12 0.16 TCGA-QK-A6VB-01 3 100035004 100035004 A G TBC1D23 Missense_Mutation p.I554V 0.38 deleterious(0.01) possibly_damaging(0.772) TCGA-QK-A6VB-01 3 105459342 105459342 C T CBLB Missense_Mutation p.G327R 0.32 deleterious(0.01) probably_damaging(1) TCGA-QK-A6VB-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.29 TCGA-QK-A6VB-01 3 122842976 122842976 C T PDIA5 Missense_Mutation p.R225C 0.30 deleterious(0.01) benign(0.022) TCGA-QK-A6VB-01 3 126291278 126291278 A G TXNRD3NB Missense_Mutation p.C37R 0.20 possibly_damaging(0.588) TCGA-QK-A6VB-01 3 130437346 130437346 G A PIK3R4 Missense_Mutation p.R672C 0.24 deleterious(0) benign(0.038) TCGA-QK-A6VB-01 3 132337599 132337599 C A ACAD11 Missense_Mutation p.E431D 0.28 deleterious(0.03) benign(0.051) TCGA-QK-A6VB-01 3 132437923 132437923 G A NPHP3 Silent p.S195S 0.23 TCGA-QK-A6VB-01 3 13896227 13896227 G T WNT7A Silent p.T124T 0.37 TCGA-QK-A6VB-01 3 14163467 14163467 G A CHCHD4 Missense_Mutation p.S4L 0.81 tolerated_low_confidence(0.09) possibly_damaging(0.519) TCGA-QK-A6VB-01 3 146177679 146177679 G A PLSCR2 Missense_Mutation p.P78S 0.28 tolerated(0.15) benign(0.169) TCGA-QK-A6VB-01 3 147128227 147128227 G A ZIC1 Missense_Mutation p.A110T 0.65 tolerated(0.22) possibly_damaging(0.499) TCGA-QK-A6VB-01 3 155301373 155301374 - A PLCH1 Frame_Shift_Ins p.Y208Lfs*19 0.18 TCGA-QK-A6VB-01 3 155560343 155560344 - T SLC33A1 Frame_Shift_Ins p.E281Rfs*119 0.10 TCGA-QK-A6VB-01 3 160149596 160149596 G A SMC4 Missense_Mutation p.A1094T 0.62 tolerated(0.06) benign(0.228) TCGA-QK-A6VB-01 3 179474843 179474843 G A USP13 Missense_Mutation p.R642H 0.06 tolerated(0.28) benign(0.005) TCGA-QK-A6VB-01 3 183910459 183910459 G A ABCF3 Missense_Mutation p.G547D 0.29 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 3 194062486 194062486 G A CPN2 Missense_Mutation p.R316C 0.24 deleterious(0.03) possibly_damaging(0.564) TCGA-QK-A6VB-01 3 196736498 196736498 C T MFI2 Missense_Mutation p.V506I 0.23 tolerated(0.77) benign(0.021) TCGA-QK-A6VB-01 3 30713243 30713243 C T TGFBR2 Missense_Mutation p.R215C 0.83 deleterious(0) possibly_damaging(0.48) TCGA-QK-A6VB-01 3 38622503 38622503 G A SCN5A Silent p.I1049I 0.82 TCGA-QK-A6VB-01 3 47040353 47040353 C T NBEAL2 Missense_Mutation p.T1123I 0.38 tolerated(0.59) benign(0.001) TCGA-QK-A6VB-01 3 48699646 48699648 GAG - CELSR3 In_Frame_Del p.S141del 0.65 TCGA-QK-A6VB-01 3 49336023 49336023 C T USP4 Missense_Mutation p.E520K 0.69 tolerated(0.88) benign(0.01) TCGA-QK-A6VB-01 3 50099449 50099450 - A RBM6 Frame_Shift_Ins p.P835Tfs*9 0.70 TCGA-QK-A6VB-01 3 52475366 52475366 C T SEMA3G Missense_Mutation p.V243M 0.34 deleterious(0.04) probably_damaging(0.989) TCGA-QK-A6VB-01 3 52559266 52559266 G - NT5DC2 Frame_Shift_Del p.R389Afs*47 0.24 TCGA-QK-A6VB-01 3 52941644 52941644 C T SFMBT1 Missense_Mutation p.R671Q 0.66 deleterious(0) benign(0.097) TCGA-QK-A6VB-01 3 69105798 69105798 C T UBA3 Missense_Mutation p.G350R 0.75 deleterious(0) probably_damaging(0.997) TCGA-QK-A6VB-01 4 104054933 104054933 C T CENPE Silent p.Q2213Q 0.72 TCGA-QK-A6VB-01 4 108566103 108566103 A G PAPSS1 Missense_Mutation p.L454P 0.11 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 4 119948386 119948386 C A SYNPO2 Missense_Mutation p.L288I 0.36 deleterious(0.04) benign(0.111) TCGA-QK-A6VB-01 4 122854027 122854027 C T TRPC3 Missense_Mutation p.R129H 0.66 deleterious(0.01) probably_damaging(0.987) TCGA-QK-A6VB-01 4 1701409 1701409 T C SLBP Missense_Mutation p.M121V 0.19 tolerated(0.31) benign(0.001) TCGA-QK-A6VB-01 4 177113863 177113863 G T SPATA4 Silent p.P201P 0.36 TCGA-QK-A6VB-01 4 177713372 177713372 A G VEGFC Missense_Mutation p.F32L 0.59 tolerated(0.15) benign(0.164) TCGA-QK-A6VB-01 4 183714543 183714543 A G TENM3 Missense_Mutation p.T2240A 0.09 deleterious(0.03) possibly_damaging(0.636) TCGA-QK-A6VB-01 4 25671280 25671280 G T SLC34A2 Missense_Mutation p.G216V 0.73 deleterious(0) probably_damaging(0.997) TCGA-QK-A6VB-01 4 26426078 26426078 G - RBPJ Frame_Shift_Del p.G218Efs*45 0.46 TCGA-QK-A6VB-01 4 2952019 2952019 C A NOP14 Intron 0.79 TCGA-QK-A6VB-01 4 41648832 41648832 T C LIMCH1 Silent p.T529T 0.40 TCGA-QK-A6VB-01 4 55138607 55138607 T C PDGFRA Silent p.T428T 0.20 TCGA-QK-A6VB-01 4 75174246 75174246 A G EPGN 5'UTR 0.26 TCGA-QK-A6VB-01 4 79792103 79792103 G A BMP2K Silent p.Q466Q 0.44 TCGA-QK-A6VB-01 4 79833124 79833124 C A BMP2K Silent p.S1141S 0.80 TCGA-QK-A6VB-01 4 90170865 90170865 G A GPRIN3 Missense_Mutation p.H133Y 0.49 tolerated(0.27) benign(0.002) TCGA-QK-A6VB-01 5 109200755 109200755 A G MAN2A1 Missense_Mutation p.N1064D 0.40 tolerated(1) benign(0.001) TCGA-QK-A6VB-01 5 112174713 112174713 C T APC Missense_Mutation p.T1141I 0.08 probably_damaging(1) TCGA-QK-A6VB-01 5 133702117 133702117 T C CDKL3 Missense_Mutation p.K33R 0.79 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 5 140482612 140482612 T C PCDHB3 Silent p.F793F 0.41 TCGA-QK-A6VB-01 5 140503168 140503168 G A PCDHB4 Missense_Mutation p.V530M 0.81 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-QK-A6VB-01 5 148756445 148756445 C T IL17B Silent p.P55P 0.77 TCGA-QK-A6VB-01 5 149755366 149755366 C T TCOF1 Missense_Mutation p.A596V 0.40 tolerated(0.07) probably_damaging(0.989) TCGA-QK-A6VB-01 5 172745210 172745210 C A STC2 Missense_Mutation p.E183D 0.83 tolerated(0.19) benign(0.116) TCGA-QK-A6VB-01 5 176696801 176696802 - A NSD1 Frame_Shift_Ins p.A1837Sfs*10 0.43 TCGA-QK-A6VB-01 5 176824887 176824887 G A SLC34A1 Missense_Mutation p.R507H 0.44 tolerated(0.54) benign(0.006) TCGA-QK-A6VB-01 5 178199531 178199531 C T AACSP1 RNA 0.86 TCGA-QK-A6VB-01 5 26881605 26881605 T C CDH9 Silent p.Q670Q 0.19 TCGA-QK-A6VB-01 5 35876380 35876380 G T IL7R Missense_Mutation p.R391M 0.08 deleterious(0.03) possibly_damaging(0.896) TCGA-QK-A6VB-01 5 37443410 37443410 T G WDR70 Missense_Mutation p.F208V 0.26 deleterious(0) possibly_damaging(0.728) TCGA-QK-A6VB-01 5 428001 428001 G A AHRR Missense_Mutation p.R285Q 0.58 tolerated(0.66) benign(0.293) TCGA-QK-A6VB-01 5 45303767 45303767 C A HCN1 Missense_Mutation p.G518C 0.22 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 5 55110883 55110883 T C DDX4 Missense_Mutation p.Y624H 0.78 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 5 6737711 6737711 G A PAPD7 Missense_Mutation p.E19K 0.42 tolerated(0.18) possibly_damaging(0.784) TCGA-QK-A6VB-01 5 67588981 67588981 C T PIK3R1 Nonsense_Mutation p.R358* 0.88 TCGA-QK-A6VB-01 5 7867655 7867655 G A FASTKD3 Missense_Mutation p.A181V 0.10 tolerated(0.08) benign(0.259) TCGA-QK-A6VB-01 5 94992014 94992015 - A RFESD 3'UTR 0.21 TCGA-QK-A6VB-01 5 95746686 95746686 C A PCSK1 Missense_Mutation p.R296I 0.39 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 6 101215218 101215218 C T ASCC3 Missense_Mutation p.G467R 0.45 deleterious(0) probably_damaging(0.941) TCGA-QK-A6VB-01 6 107389947 107389947 T - BEND3 Frame_Shift_Del p.K816Nfs*17 0.34 TCGA-QK-A6VB-01 6 111329324 111329324 A - RPF2 Frame_Shift_Del p.S161Vfs*20 0.18 TCGA-QK-A6VB-01 6 112395985 112395985 G A TUBE1 Missense_Mutation p.P294L 0.32 deleterious(0.04) probably_damaging(0.965) TCGA-QK-A6VB-01 6 117884426 117884426 T - GOPC Frame_Shift_Del p.K460Nfs*27 0.21 TCGA-QK-A6VB-01 6 122779664 122779664 C A SERINC1 Splice_Site p.X67_splice 0.19 TCGA-QK-A6VB-01 6 137323366 137323366 C A IL20RA Nonsense_Mutation p.G331* 0.43 TCGA-QK-A6VB-01 6 143081787 143081787 G A HIVEP2 Missense_Mutation p.H1880Y 0.44 tolerated(0.65) benign(0.243) TCGA-QK-A6VB-01 6 144263510 144263510 G A PLAGL1 Missense_Mutation p.P148L 0.20 tolerated(0.09) benign(0.002) TCGA-QK-A6VB-01 6 146720454 146720454 A T GRM1 Missense_Mutation p.N760I 0.21 deleterious(0.02) possibly_damaging(0.838) TCGA-QK-A6VB-01 6 151686558 151686558 T C ZBTB2 3'UTR 0.25 TCGA-QK-A6VB-01 6 157528599 157528599 G T ARID1B Missense_Mutation p.Q2108H 0.08 probably_damaging(0.995) TCGA-QK-A6VB-01 6 160969620 160969620 C A LPA Missense_Mutation p.S1682I 0.48 tolerated(0.09) possibly_damaging(0.786) TCGA-QK-A6VB-01 6 16307061 16307061 A G ATXN1 Silent p.P649P 0.18 TCGA-QK-A6VB-01 6 163984541 163984541 C T QKI Missense_Mutation p.R242C 0.23 deleterious(0.03) benign(0.037) TCGA-QK-A6VB-01 6 169640616 169640616 C T THBS2 Nonsense_Mutation p.W321* 0.04 TCGA-QK-A6VB-01 6 26022048 26022048 T C HIST1H4A Missense_Mutation p.S48P 0.31 deleterious(0) probably_damaging(0.996) TCGA-QK-A6VB-01 6 26469068 26469068 G A BTN2A1 3'UTR 0.53 TCGA-QK-A6VB-01 6 27783013 27783013 C G HIST1H2BM Missense_Mutation p.N64K 0.43 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-QK-A6VB-01 6 30652622 30652623 CT - PPP1R18 Frame_Shift_Del p.R391Sfs*104 0.09 TCGA-QK-A6VB-01 6 30680659 30680659 G A MDC1 Missense_Mutation p.H354Y 0.14 tolerated(0.16) probably_damaging(0.954) TCGA-QK-A6VB-01 6 31842534 31842535 - T SLC44A4 Frame_Shift_Ins p.N144Kfs*55 0.22 TCGA-QK-A6VB-01 6 33744789 33744789 G A LEMD2 Missense_Mutation p.R435C 0.42 deleterious(0.01) probably_damaging(0.916) TCGA-QK-A6VB-01 6 35715212 35715212 G A ARMC12 Splice_Site p.X233_splice 0.18 TCGA-QK-A6VB-01 6 42832626 42832627 - A GLTSCR1L Frame_Shift_Ins p.T897Nfs*11 0.14 TCGA-QK-A6VB-01 6 43006186 43006186 C T CUL7 Missense_Mutation p.S1615N 0.07 tolerated(0.19) benign(0.02) TCGA-QK-A6VB-01 6 43476148 43476148 C T LRRC73 Silent p.E148E 0.28 TCGA-QK-A6VB-01 6 46609912 46609912 C T CYP39A1 Missense_Mutation p.V101I 0.40 tolerated(0.22) benign(0.08) TCGA-QK-A6VB-01 6 6174959 6174959 A G F13A1 Missense_Mutation p.F534S 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-QK-A6VB-01 6 73787199 73787199 A G KCNQ5 Silent p.S257S 0.47 TCGA-QK-A6VB-01 6 7567636 7567636 C T DSP Missense_Mutation p.T365I 0.36 probably_damaging(0.999) TCGA-QK-A6VB-01 6 80406213 80406213 T - SH3BGRL2 Frame_Shift_Del p.F83Lfs*13 0.31 TCGA-QK-A6VB-01 6 83848263 83848263 C T DOPEY1 Missense_Mutation p.A1501V 0.22 tolerated(0.99) benign(0.013) TCGA-QK-A6VB-01 6 99283725 99283725 C T POU3F2 Missense_Mutation p.P326S 0.18 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 7 100817864 100817864 G A NAT16 Silent p.G75G 0.37 TCGA-QK-A6VB-01 7 107399402 107399402 C - CBLL1 Frame_Shift_Del p.P420Lfs*20 0.27 TCGA-QK-A6VB-01 7 120979211 120979211 G T WNT16 Missense_Mutation p.G304W 0.09 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 7 123508423 123508423 C T HYAL4 Silent p.I32I 0.29 TCGA-QK-A6VB-01 7 127253865 127253865 G A PAX4 Silent p.T161T 0.57 TCGA-QK-A6VB-01 7 128640604 128640604 C T TNPO3 Missense_Mutation p.R297H 0.27 deleterious(0) possibly_damaging(0.698) TCGA-QK-A6VB-01 7 130040050 130040050 C A CEP41 Missense_Mutation p.G268V 0.19 deleterious(0) probably_damaging(0.995) TCGA-QK-A6VB-01 7 139833448 139833448 T - KDM7A Frame_Shift_Del p.R97Gfs*41 0.21 TCGA-QK-A6VB-01 7 141364990 141364990 C T KIAA1147 Missense_Mutation p.A317T 0.54 deleterious(0) probably_damaging(0.997) TCGA-QK-A6VB-01 7 142749550 142749551 - G OR6V1 Frame_Shift_Ins p.N40Kfs*11 0.22 TCGA-QK-A6VB-01 7 148718078 148718078 G A PDIA4 Silent p.L84L 0.31 TCGA-QK-A6VB-01 7 155595700 155595700 G A SHH Missense_Mutation p.A428V 0.31 tolerated(0.22) benign(0.004) TCGA-QK-A6VB-01 7 35129958 35129958 T C DPY19L2P1 RNA 0.59 TCGA-QK-A6VB-01 7 48068414 48068414 C A SUN3 Missense_Mutation p.G41V 0.17 deleterious_low_confidence(0.04) benign(0.231) TCGA-QK-A6VB-01 7 64530078 64530078 T A SNORA22 3'Flank 0.60 TCGA-QK-A6VB-01 7 72413825 72413825 C T POM121 Missense_Mutation p.T833M 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-QK-A6VB-01 7 72683274 72683274 G A GTF2IRD2P1 RNA 0.16 TCGA-QK-A6VB-01 7 94185016 94185017 - T CASD1 Frame_Shift_Ins p.C783Lfs*12 0.13 TCGA-QK-A6VB-01 8 110464996 110464996 G - PKHD1L1 Frame_Shift_Del p.G2188Efs*28 0.32 TCGA-QK-A6VB-01 8 118170065 118170065 C T SLC30A8 Missense_Mutation p.A185V 0.05 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 8 121509782 121509782 A G MTBP Missense_Mutation p.N533D 0.10 tolerated(0.43) benign(0.005) TCGA-QK-A6VB-01 8 12598402 12598402 G A LONRF1 Missense_Mutation p.A315V 0.23 deleterious(0) probably_damaging(0.998) TCGA-QK-A6VB-01 8 12878930 12878930 C A KIAA1456 Missense_Mutation p.R248S 0.21 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 8 139833404 139833404 C T COL22A1 Missense_Mutation p.R407H 0.60 unknown(0) TCGA-QK-A6VB-01 8 144891171 144891171 C T SCRIB Missense_Mutation p.A575T 0.35 benign(0.003) TCGA-QK-A6VB-01 8 144991437 144991437 G A PLEC Silent p.S4321S 0.07 TCGA-QK-A6VB-01 8 145008885 145008885 T C PLEC Missense_Mutation p.Q457R 0.16 unknown(0) TCGA-QK-A6VB-01 8 145060033 145060033 G A PARP10 Missense_Mutation p.P98S 0.22 deleterious(0.01) probably_damaging(0.959) TCGA-QK-A6VB-01 8 146015766 146015766 G A RPL8 Missense_Mutation p.P197S 0.06 deleterious(0) probably_damaging(0.965) TCGA-QK-A6VB-01 8 22432192 22432192 G T SORBS3 Missense_Mutation p.R656M 0.26 deleterious(0) probably_damaging(0.982) TCGA-QK-A6VB-01 8 27593739 27593739 G T CCDC25 Missense_Mutation p.F207L 0.51 deleterious(0) possibly_damaging(0.728) TCGA-QK-A6VB-01 8 27729324 27729324 G A SCARA5 3'UTR 0.27 TCGA-QK-A6VB-01 8 29018290 29018290 G A KIF13B Missense_Mutation p.A455V 0.07 deleterious(0) possibly_damaging(0.826) TCGA-QK-A6VB-01 8 48746868 48746868 C T PRKDC Missense_Mutation p.A2680T 0.20 benign(0.013) TCGA-QK-A6VB-01 8 54682246 54682246 C T ATP6V1H Silent p.V369V 0.04 TCGA-QK-A6VB-01 8 55538415 55538416 - A RP1 Frame_Shift_Ins p.N660Kfs*2 0.15 TCGA-QK-A6VB-01 8 59059200 59059200 C T FAM110B Silent p.H137H 0.25 TCGA-QK-A6VB-01 8 73479974 73479974 C T KCNB2 Missense_Mutation p.A2V 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-QK-A6VB-01 8 74888504 74888504 C T TMEM70 5'UTR 0.42 TCGA-QK-A6VB-01 8 90796344 90796344 C T RIPK2 Missense_Mutation p.P336S 0.17 tolerated(0.14) benign(0.005) TCGA-QK-A6VB-01 8 94745548 94745548 A - RBM12B 3'UTR 0.56 TCGA-QK-A6VB-01 8 95837161 95837161 G A INTS8 Silent p.Q57Q 0.54 TCGA-QK-A6VB-01 8 97621857 97621858 - T SDC2 3'UTR 0.44 TCGA-QK-A6VB-01 9 123908452 123908452 A G CNTRL Missense_Mutation p.Q1126R 0.27 probably_damaging(0.998) TCGA-QK-A6VB-01 9 131076091 131076091 G T TRUB2 Silent p.T152T 0.35 TCGA-QK-A6VB-01 9 134504527 134504527 G - RAPGEF1 Frame_Shift_Del p.K287Sfs*38 0.26 TCGA-QK-A6VB-01 9 135210036 135210036 A T SETX Missense_Mutation p.F266Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 9 135946437 135946437 C T CEL Silent p.S519S 0.28 TCGA-QK-A6VB-01 9 138011607 138011607 C T OLFM1 Silent p.Y329Y 0.84 TCGA-QK-A6VB-01 9 140053103 140053103 C T GRIN1 Missense_Mutation p.P403S 0.30 deleterious(0) probably_damaging(1) TCGA-QK-A6VB-01 9 140057651 140057651 G A GRIN1 Silent p.A755A 0.21 TCGA-QK-A6VB-01 9 140396160 140396160 C T PNPLA7 Missense_Mutation p.G498D 0.25 tolerated(0.32) benign(0.106) TCGA-QK-A6VB-01 9 17793391 17793392 - A SH3GL2 Frame_Shift_Ins p.R253Kfs*6 0.28 TCGA-QK-A6VB-01 9 22452006 22452006 G A DMRTA1 3'UTR 0.27 TCGA-QK-A6VB-01 9 23762147 23762147 A G ELAVL2 Missense_Mutation p.V29A 0.11 tolerated_low_confidence(0.53) benign(0.001) TCGA-QK-A6VB-01 9 34618739 34618739 T C DCTN3 Missense_Mutation p.K39E 0.29 tolerated(0.14) possibly_damaging(0.747) TCGA-QK-A6VB-01 9 35689769 35689769 C G TPM2 Missense_Mutation p.E16Q 0.71 deleterious(0) possibly_damaging(0.764) TCGA-QK-A6VB-01 9 74842873 74842873 C T GDA Silent p.H279H 0.38 TCGA-QK-A6VB-01 9 91686146 91686146 G A SHC3 Missense_Mutation p.R251W 0.78 deleterious(0) possibly_damaging(0.67) TCGA-QK-A6VB-01 9 95840266 95840266 G A SUSD3 Missense_Mutation p.R139H 0.05 tolerated(0.1) benign(0.15) TCGA-QK-A6VB-01 X 10085539 10085539 G A WWC3 Silent p.P480P 0.90 TCGA-QK-A6VB-01 X 103220211 103220212 - T TMSB15B 3'UTR 0.68 TCGA-QK-A6VB-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.50 TCGA-QK-A6VB-01 X 140984816 140984816 G A MAGEC3 Silent p.L424L 1.00 TCGA-QK-A6VB-01 X 153694099 153694099 G A PLXNA3 Missense_Mutation p.C814Y 0.51 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VB-01 X 19389133 19389133 G A MAP3K15 Missense_Mutation p.A1115V 0.19 tolerated(0.25) benign(0.093) TCGA-QK-A6VB-01 X 43603794 43603794 T C MAOA 3'UTR 0.41 TCGA-QK-A6VB-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.44 TCGA-QK-A6VB-01 X 92964568 92964569 - A FAM133A Frame_Shift_Ins p.T53Nfs*8 0.48 TCGA-QK-A6VC-01 10 115603955 115603955 G C DCLRE1A Silent p.V809V 0.07 TCGA-QK-A6VC-01 10 135038267 135038267 G A KNDC1 Missense_Mutation p.R1708H 0.19 tolerated(0.37) benign(0.036) TCGA-QK-A6VC-01 10 15325940 15325940 C A FAM171A1 Missense_Mutation p.V88F 0.14 deleterious(0) probably_damaging(0.989) TCGA-QK-A6VC-01 10 50943207 50943207 C G OGDHL 3'UTR 0.09 TCGA-QK-A6VC-01 10 53459276 53459276 C A CSTF2T Missense_Mutation p.D12Y 0.08 deleterious(0) probably_damaging(0.993) TCGA-QK-A6VC-01 10 7786082 7786082 G A ITIH2 Silent p.K749K 0.21 TCGA-QK-A6VC-01 10 95557360 95557360 C G LGI1 Missense_Mutation p.L492V 0.14 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VC-01 11 102826059 102826059 C G MMP13 Missense_Mutation p.R95T 0.13 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VC-01 11 118363941 118363941 C G KMT2A Missense_Mutation p.S1725C 0.11 probably_damaging(0.997) TCGA-QK-A6VC-01 11 1264910 1264910 C T MUC5B Missense_Mutation p.S2267F 0.05 probably_damaging(0.921) TCGA-QK-A6VC-01 11 20101610 20101610 G T NAV2 Missense_Mutation p.G1783V 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-QK-A6VC-01 11 20101734 20101734 G C NAV2 Missense_Mutation p.K1824N 0.14 deleterious(0) probably_damaging(0.997) TCGA-QK-A6VC-01 11 55860975 55860975 C A OR8I2 Missense_Mutation p.S64R 0.07 deleterious(0.04) benign(0.017) TCGA-QK-A6VC-01 11 56310057 56310057 C T OR5M11 Missense_Mutation p.R226Q 0.12 deleterious(0.01) benign(0.127) TCGA-QK-A6VC-01 11 57069412 57069412 G A TNKS1BP1 Missense_Mutation p.R1614W 0.05 deleterious(0) probably_damaging(0.958) TCGA-QK-A6VC-01 11 57367739 57367739 G A SERPING1 Missense_Mutation p.V147I 0.16 tolerated(0.65) benign(0.011) TCGA-QK-A6VC-01 11 61015925 61015925 G A PGA5 Missense_Mutation p.G231S 0.15 deleterious(0) probably_damaging(0.991) TCGA-QK-A6VC-01 11 61183152 61183152 G C CPSF7 Missense_Mutation p.S400C 0.07 tolerated(0.07) benign(0.149) TCGA-QK-A6VC-01 11 61183233 61183233 G C CPSF7 Missense_Mutation p.S373C 0.07 tolerated(0.05) possibly_damaging(0.673) TCGA-QK-A6VC-01 11 62065028 62065028 G T SCGB1D4 Missense_Mutation p.P53Q 0.09 tolerated(0.3) probably_damaging(0.999) TCGA-QK-A6VC-01 11 63994239 63994239 G A NUDT22 Missense_Mutation p.E39K 0.11 tolerated(1) benign(0.001) TCGA-QK-A6VC-01 11 66276608 66276608 C G DPP3 Missense_Mutation p.F700L 0.12 tolerated(0.08) possibly_damaging(0.816) TCGA-QK-A6VC-01 11 67372240 67372240 G A C11orf72 Nonsense_Mutation p.Q101* 0.15 TCGA-QK-A6VC-01 11 67376948 67376948 G C NDUFV1 Missense_Mutation p.D118H 0.19 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-QK-A6VC-01 11 7021955 7021955 T C ZNF214 Missense_Mutation p.N320S 0.09 tolerated(0.82) benign(0.004) TCGA-QK-A6VC-01 11 73716916 73716916 C A UCP3 Missense_Mutation p.A134S 0.10 deleterious(0.01) probably_damaging(0.982) TCGA-QK-A6VC-01 11 9801975 9801975 G C SBF2 Missense_Mutation p.S1847C 0.12 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-QK-A6VC-01 12 122625503 122625503 C T MLXIP Silent p.F837F 0.19 TCGA-QK-A6VC-01 12 133389906 133389906 C T GOLGA3 Missense_Mutation p.R169H 0.20 deleterious_low_confidence(0.02) probably_damaging(0.949) TCGA-QK-A6VC-01 12 133727683 133727683 C T CTD-2140B24.4 Nonsense_Mutation p.Q35* 0.15 TCGA-QK-A6VC-01 12 32136680 32136680 C T KIAA1551 Nonsense_Mutation p.Q931* 0.17 TCGA-QK-A6VC-01 12 32137391 32137391 G C KIAA1551 Missense_Mutation p.D1168H 0.08 deleterious(0) probably_damaging(1) TCGA-QK-A6VC-01 12 49088077 49088077 G T CCNT1 Missense_Mutation p.T307K 0.08 deleterious(0.01) benign(0.075) TCGA-QK-A6VC-01 12 52758751 52758751 C A KRT85 Missense_Mutation p.K208N 0.05 deleterious(0) probably_damaging(0.998) TCGA-QK-A6VC-01 12 53400278 53400278 C T EIF4B Missense_Mutation p.S4L 0.10 deleterious(0.01) benign(0.307) TCGA-QK-A6VC-01 12 57918797 57918797 C T MBD6 Missense_Mutation p.S93L 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-QK-A6VC-01 12 63541270 63541270 C G AVPR1A Missense_Mutation p.E376Q 0.14 tolerated(0.8) benign(0.042) TCGA-QK-A6VC-01 12 6659915 6659915 C T IFFO1 Silent p.L292L 0.18 TCGA-QK-A6VC-01 12 66603261 66603261 G C IRAK3 Missense_Mutation p.K114N 0.05 tolerated(0.3) benign(0.048) TCGA-QK-A6VC-01 12 72022728 72022728 C T ZFC3H1 Missense_Mutation p.E1306K 0.11 deleterious(0.04) benign(0.008) TCGA-QK-A6VC-01 12 75763946 75763946 G C GLIPR1L1 Missense_Mutation p.R231T 0.11 tolerated(0.1) benign(0.066) TCGA-QK-A6VC-01 12 7639514 7639514 C T CD163 Missense_Mutation p.E707K 0.18 tolerated(0.07) benign(0.018) TCGA-QK-A6VC-01 13 19753597 19753597 G A TUBA3C Missense_Mutation p.P37L 0.11 tolerated_low_confidence(0.12) benign(0.019) TCGA-QK-A6VC-01 13 33716499 33716499 G A STARD13 Missense_Mutation p.T112M 0.11 deleterious(0) probably_damaging(1) TCGA-QK-A6VC-01 13 47354167 47354167 G A ESD Missense_Mutation p.S168F 0.20 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VC-01 13 58208458 58208458 C T PCDH17 Missense_Mutation p.A593V 0.12 tolerated(0.11) probably_damaging(0.995) TCGA-QK-A6VC-01 13 61986156 61986156 A G PCDH20 Silent p.G692G 0.23 TCGA-QK-A6VC-01 13 72134001 72134001 G A DACH1 Silent p.S464S 0.22 TCGA-QK-A6VC-01 14 31071207 31071207 G A G2E3 Missense_Mutation p.E294K 0.10 tolerated(0.75) benign(0) TCGA-QK-A6VC-01 14 33015613 33015613 C G AKAP6 Missense_Mutation p.S585C 0.17 deleterious(0) possibly_damaging(0.599) TCGA-QK-A6VC-01 14 55429793 55429793 G C WDHD1 Missense_Mutation p.S803C 0.16 tolerated(0.11) benign(0.064) TCGA-QK-A6VC-01 14 65406134 65406134 G A GPX2 3'UTR 0.13 TCGA-QK-A6VC-01 14 71444826 71444826 C A PCNX Missense_Mutation p.P591Q 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QK-A6VC-01 14 92436038 92436038 C T TRIP11 Silent p.L1973L 0.10 TCGA-QK-A6VC-01 14 96771954 96771954 G A ATG2B Missense_Mutation p.P1569S 0.15 tolerated(0.06) possibly_damaging(0.862) TCGA-QK-A6VC-01 15 35166957 35166957 C G AQR Missense_Mutation p.E1116Q 0.06 deleterious(0.01) possibly_damaging(0.899) TCGA-QK-A6VC-01 16 23436185 23436185 G A COG7 Silent p.L298L 0.11 TCGA-QK-A6VC-01 16 2546545 2546545 C T RP11-20I23.1 Silent p.P132P 0.10 TCGA-QK-A6VC-01 16 3141583 3141583 C T ZSCAN10 Missense_Mutation p.E194K 0.07 tolerated(0.07) benign(0.152) TCGA-QK-A6VC-01 16 3187479 3187479 C T ZNF213 Silent p.L66L 0.08 TCGA-QK-A6VC-01 16 4871597 4871597 G A GLYR1 Missense_Mutation p.P228L 0.10 deleterious(0.01) benign(0.008) TCGA-QK-A6VC-01 16 4924259 4924259 G A UBN1 Silent p.Q616Q 0.08 TCGA-QK-A6VC-01 16 66426264 66426264 G A CDH5 Missense_Mutation p.D399N 0.26 deleterious(0) probably_damaging(0.998) TCGA-QK-A6VC-01 16 66847750 66847750 C A NAE1 Splice_Site p.X281_splice 0.05 TCGA-QK-A6VC-01 16 67684046 67684046 C T RLTPR Missense_Mutation p.S726L 0.33 deleterious(0.01) benign(0.029) TCGA-QK-A6VC-01 16 68072007 68072007 G C DUS2 Missense_Mutation p.M27I 0.06 deleterious(0.01) possibly_damaging(0.771) TCGA-QK-A6VC-01 16 76482036 76482036 C G CNTNAP4 Silent p.L197L 0.12 TCGA-QK-A6VC-01 16 76486617 76486617 T A CNTNAP4 Silent p.L355L 0.09 TCGA-QK-A6VC-01 16 89261450 89261450 G A CDH15 Missense_Mutation p.D778N 0.17 tolerated(0.16) possibly_damaging(0.487) TCGA-QK-A6VC-01 17 19683938 19683938 G A ULK2 Silent p.V921V 0.09 TCGA-QK-A6VC-01 17 43195405 43195405 G C PLCD3 Missense_Mutation p.L406V 0.25 deleterious(0.04) probably_damaging(0.946) TCGA-QK-A6VC-01 17 4805796 4805796 A G CHRNE Intron 0.07 TCGA-QK-A6VC-01 17 48613940 48613940 G T EPN3 Missense_Mutation p.R8L 0.05 deleterious(0) probably_damaging(1) TCGA-QK-A6VC-01 17 73016661 73016661 G A ICT1 Missense_Mutation p.D149N 0.08 deleterious(0.02) benign(0.151) TCGA-QK-A6VC-01 17 7578500 7578500 G A TP53 Nonsense_Mutation p.Q144* 0.22 TCGA-QK-A6VC-01 18 21422676 21422676 G A LAMA3 Missense_Mutation p.A1189T 0.14 benign(0.011) TCGA-QK-A6VC-01 18 2921635 2921635 C T LPIN2 Missense_Mutation p.E780K 0.20 deleterious(0) probably_damaging(1) TCGA-QK-A6VC-01 18 31318539 31318539 G T ASXL3 Missense_Mutation p.G391C 0.10 benign(0.023) TCGA-QK-A6VC-01 18 6985295 6985295 C T LAMA1 Silent p.L1867L 0.11 TCGA-QK-A6VC-01 19 12155051 12155051 G C ZNF878 Missense_Mutation p.H389D 0.08 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VC-01 19 1422393 1422393 G A DAZAP1 Missense_Mutation p.R154Q 0.09 deleterious(0) unknown(0) TCGA-QK-A6VC-01 19 19377413 19377413 C G TM6SF2 Silent p.L270L 0.18 TCGA-QK-A6VC-01 19 3452488 3452488 C T NFIC Missense_Mutation p.R365W 0.09 deleterious(0) probably_damaging(0.98) TCGA-QK-A6VC-01 19 36370086 36370086 G C APLP1 Missense_Mutation p.K608N 0.07 deleterious(0) probably_damaging(0.933) TCGA-QK-A6VC-01 19 39221800 39221800 C T CAPN12 Missense_Mutation p.R674H 0.07 tolerated(0.28) possibly_damaging(0.726) TCGA-QK-A6VC-01 19 40739366 40739366 G A AKT2 3'UTR 0.12 TCGA-QK-A6VC-01 19 42866710 42866710 G T MEGF8 Nonsense_Mutation p.E1940* 0.10 TCGA-QK-A6VC-01 19 43420318 43420318 C A PSG6 Missense_Mutation p.G129V 0.17 tolerated(0.3) benign(0.371) TCGA-QK-A6VC-01 19 47111501 47111501 A G CALM3 Missense_Mutation p.I28V 0.23 deleterious_low_confidence(0.03) benign(0.259) TCGA-QK-A6VC-01 19 51009451 51009451 G A JOSD2 Silent p.G182G 0.35 TCGA-QK-A6VC-01 19 53645521 53645521 C G ZNF347 Missense_Mutation p.S188T 0.10 tolerated(0.08) benign(0.122) TCGA-QK-A6VC-01 19 57133846 57133846 C T ZNF71 Silent p.L397L 0.07 TCGA-QK-A6VC-01 19 57648307 57648307 A G ZIM3 Silent p.L59L 0.10 TCGA-QK-A6VC-01 19 7828326 7828326 C T CLEC4M Nonsense_Mutation p.Q32* 0.07 TCGA-QK-A6VC-01 19 8321959 8321959 G A CERS4 Missense_Mutation p.E247K 0.09 deleterious(0) probably_damaging(1) TCGA-QK-A6VC-01 19 9063268 9063268 C T MUC16 Missense_Mutation p.D8060N 0.21 unknown(0) TCGA-QK-A6VC-01 1 111662502 111662502 G T DRAM2 Missense_Mutation p.D199E 0.09 tolerated(1) benign(0.004) TCGA-QK-A6VC-01 1 1284362 1284362 G A DVL1 Silent p.V28V 0.17 TCGA-QK-A6VC-01 1 1372561 1372561 G A VWA1 Missense_Mutation p.D110N 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-QK-A6VC-01 1 150280756 150280756 G T MRPS21 3'UTR 0.23 TCGA-QK-A6VC-01 1 158647584 158647584 G C SPTA1 Missense_Mutation p.P285A 0.17 tolerated(0.86) benign(0.311) TCGA-QK-A6VC-01 1 159505570 159505570 G C OR10J5 Silent p.V76V 0.15 TCGA-QK-A6VC-01 1 161559488 161559488 C T RP11-25K21.6 Intron 0.33 TCGA-QK-A6VC-01 1 16946376 16946376 G A RP5-1182A14.5 3'Flank 0.15 TCGA-QK-A6VC-01 1 177908869 177908869 G A SEC16B Missense_Mutation p.S724L 0.21 tolerated(0.47) benign(0.008) TCGA-QK-A6VC-01 1 179989910 179989910 G A CEP350 Missense_Mutation p.D1001N 0.08 benign(0.002) TCGA-QK-A6VC-01 1 185062311 185062311 C A RNF2 Missense_Mutation p.H123N 0.07 deleterious(0) probably_damaging(0.932) TCGA-QK-A6VC-01 1 200377405 200377405 T C ZNF281 Missense_Mutation p.K477E 0.07 deleterious(0.04) probably_damaging(0.985) TCGA-QK-A6VC-01 1 206760287 206760287 G C RASSF5 Missense_Mutation p.E412Q 0.11 tolerated(0.53) benign(0.101) TCGA-QK-A6VC-01 1 208204977 208204977 C A PLXNA2 Missense_Mutation p.S1728I 0.16 deleterious(0.01) benign(0.164) TCGA-QK-A6VC-01 1 210012466 210012466 C G DIEXF Missense_Mutation p.F425L 0.24 deleterious(0) probably_damaging(0.989) TCGA-QK-A6VC-01 1 242159618 242159618 C T MAP1LC3C Missense_Mutation p.M97I 0.09 tolerated(0.08) possibly_damaging(0.732) TCGA-QK-A6VC-01 1 247835662 247835662 C T OR13G1 Missense_Mutation p.V228I 0.09 deleterious(0) benign(0.009) TCGA-QK-A6VC-01 1 26135118 26135118 C T SEPN1 Silent p.A195A 0.22 TCGA-QK-A6VC-01 1 32670262 32670262 G C CCDC28B Intron 0.08 TCGA-QK-A6VC-01 1 38287971 38287971 G T MTF1 Missense_Mutation p.P530Q 0.09 deleterious(0) possibly_damaging(0.771) TCGA-QK-A6VC-01 1 39806526 39806526 G A MACF1 Intron 0.11 TCGA-QK-A6VC-01 1 52703972 52703972 G T ZFYVE9 Missense_Mutation p.G295C 0.12 deleterious_low_confidence(0.02) benign(0.013) TCGA-QK-A6VC-01 1 57425789 57425789 T C C8B Silent p.R51R 0.06 TCGA-QK-A6VC-01 1 66384409 66384409 A C PDE4B Silent p.R58R 0.10 TCGA-QK-A6VC-01 1 70819809 70819809 G C ANKRD13C Missense_Mutation p.L95V 0.12 tolerated_low_confidence(0.76) benign(0.002) TCGA-QK-A6VC-01 1 99767356 99767356 G C LPPR4 Missense_Mutation p.G290A 0.12 tolerated(1) benign(0.015) TCGA-QK-A6VC-01 20 2639112 2639112 G A IDH3B 3'UTR 0.10 TCGA-QK-A6VC-01 20 37214687 37214687 A T ADIG Missense_Mutation p.D47V 0.29 tolerated(0.2) benign(0.012) TCGA-QK-A6VC-01 20 52645124 52645124 G T BCAS1 Missense_Mutation p.T177K 0.05 deleterious(0.01) benign(0.018) TCGA-QK-A6VC-01 20 57767136 57767136 G A ZNF831 Silent p.E354E 0.25 TCGA-QK-A6VC-01 21 40768910 40768910 C T WRB 3'UTR 0.09 TCGA-QK-A6VC-01 21 45993826 45993826 C T KRTAP10-4 Missense_Mutation p.S64F 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-QK-A6VC-01 21 47423881 47423881 G A COL6A1 Missense_Mutation p.R1014H 0.06 deleterious(0.02) benign(0.042) TCGA-QK-A6VC-01 22 20460094 20460094 C G RIMBP3 Missense_Mutation p.R403P 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-QK-A6VC-01 22 22569391 22569391 C G IGLV10-54 Missense_Mutation p.S28W 0.17 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-QK-A6VC-01 22 26294277 26294277 G T MYO18B Missense_Mutation p.G1558W 0.07 deleterious(0) probably_damaging(0.94) TCGA-QK-A6VC-01 22 32754310 32754310 C G RFPL3 Silent p.V84V 0.11 TCGA-QK-A6VC-01 22 50943396 50943396 C A LMF2 Silent p.V424V 0.27 TCGA-QK-A6VC-01 2 100015808 100015808 C G EIF5B Missense_Mutation p.F1198L 0.06 possibly_damaging(0.77) TCGA-QK-A6VC-01 2 10188608 10188609 TG - KLF11 Frame_Shift_Del p.V383Pfs*29 0.10 TCGA-QK-A6VC-01 2 102785104 102785104 G C IL1R1 Missense_Mutation p.E234D 0.11 tolerated(0.32) benign(0.432) TCGA-QK-A6VC-01 2 1507769 1507769 G A TPO Silent p.A812A 0.09 TCGA-QK-A6VC-01 2 157406233 157406233 C A GPD2 Missense_Mutation p.Q259K 0.07 tolerated(0.54) benign(0.001) TCGA-QK-A6VC-01 2 178681637 178681637 G A PDE11A Silent p.I552I 0.09 TCGA-QK-A6VC-01 2 179429174 179429174 C T TTN Missense_Mutation p.E27229K 0.16 TCGA-QK-A6VC-01 2 179431877 179431877 C T TTN Missense_Mutation p.E26328K 0.06 TCGA-QK-A6VC-01 2 201400850 201400850 G A SGOL2 Missense_Mutation p.M124I 0.13 tolerated(0.13) possibly_damaging(0.693) TCGA-QK-A6VC-01 2 202677239 202677239 C T CDK15 Silent p.I134I 0.07 TCGA-QK-A6VC-01 2 206166297 206166297 C G PARD3B Silent p.V772V 0.19 TCGA-QK-A6VC-01 2 206884551 206884551 C T INO80D Silent p.L439L 0.21 TCGA-QK-A6VC-01 2 219602570 219602570 G T TTLL4 Missense_Mutation p.K57N 0.07 deleterious(0.01) benign(0.118) TCGA-QK-A6VC-01 2 220414722 220414722 C T TMEM198 3'UTR 0.29 TCGA-QK-A6VC-01 2 226273608 226273608 C G NYAP2 Silent p.S4S 0.11 TCGA-QK-A6VC-01 2 26204762 26204762 C G KIF3C Missense_Mutation p.E9Q 0.09 probably_damaging(0.998) TCGA-QK-A6VC-01 2 27601563 27601563 G A ZNF513 Silent p.L190L 0.11 TCGA-QK-A6VC-01 2 32434586 32434586 G A SLC30A6 Missense_Mutation p.E321K 0.10 deleterious(0) probably_damaging(0.943) TCGA-QK-A6VC-01 2 44445164 44445164 C G PPM1B Missense_Mutation p.I341M 0.11 tolerated(0.27) benign(0.016) TCGA-QK-A6VC-01 2 47287910 47287910 G A TTC7A Missense_Mutation p.E719K 0.06 deleterious(0.03) benign(0.062) TCGA-QK-A6VC-01 2 49190661 49190661 G A FSHR Silent p.A433A 0.18 TCGA-QK-A6VC-01 2 74654356 74654356 G C RTKN Missense_Mutation p.P434A 0.07 tolerated(0.68) probably_damaging(0.94) TCGA-QK-A6VC-01 2 74687518 74687518 G A WBP1 Missense_Mutation p.E174K 0.08 tolerated(0.13) benign(0.345) TCGA-QK-A6VC-01 2 97490833 97490833 G A CNNM3 Missense_Mutation p.E422K 0.08 deleterious(0) possibly_damaging(0.786) TCGA-QK-A6VC-01 2 98274689 98274689 C T ACTR1B Missense_Mutation p.D250N 0.12 tolerated(0.23) benign(0.001) TCGA-QK-A6VC-01 3 108324266 108324266 C G DZIP3 Missense_Mutation p.P5A 0.13 tolerated_low_confidence(0.2) benign(0.001) TCGA-QK-A6VC-01 3 186971086 186971086 T G MASP1 Missense_Mutation p.K254N 0.08 tolerated(0.17) benign(0.003) TCGA-QK-A6VC-01 3 28361149 28361149 C T CMC1 3'UTR 0.21 TCGA-QK-A6VC-01 3 33648240 33648240 C G CLASP2 Missense_Mutation p.G514R 0.07 deleterious(0) probably_damaging(1) TCGA-QK-A6VC-01 3 4558249 4558249 G A ITPR1 Missense_Mutation p.G25E 0.08 deleterious(0) probably_damaging(1) TCGA-QK-A6VC-01 3 45872573 45872573 C T LZTFL1 Missense_Mutation p.E172K 0.15 deleterious(0) probably_damaging(0.973) TCGA-QK-A6VC-01 3 47456604 47456604 G A SCAP Silent p.S1041S 0.07 TCGA-QK-A6VC-01 3 47889778 47889778 C T DHX30 Missense_Mutation p.R799W 0.07 deleterious(0.01) probably_damaging(0.973) TCGA-QK-A6VC-01 3 49064276 49064276 G C IMPDH2 Missense_Mutation p.I221M 0.08 tolerated(0.14) possibly_damaging(0.707) TCGA-QK-A6VC-01 3 98251898 98251898 C G GPR15 Missense_Mutation p.L341V 0.19 tolerated(0.11) benign(0.008) TCGA-QK-A6VC-01 4 126373805 126373805 C T FAT4 Silent p.H3878H 0.15 TCGA-QK-A6VC-01 4 138453256 138453256 A T PCDH18 5'UTR 0.05 TCGA-QK-A6VC-01 4 2831387 2831387 G A SH3BP2 Missense_Mutation p.E309K 0.10 deleterious_low_confidence(0.04) benign(0.333) TCGA-QK-A6VC-01 4 38828727 38828727 C T TLR6 Missense_Mutation p.E790K 0.10 tolerated(0.15) benign(0.026) TCGA-QK-A6VC-01 4 40245496 40245496 G C RHOH Missense_Mutation p.E164Q 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-QK-A6VC-01 4 47765413 47765413 G C CORIN Missense_Mutation p.I200M 0.08 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-QK-A6VC-01 4 647878 647878 G C PDE6B Missense_Mutation p.D288H 0.07 tolerated(0.08) probably_damaging(1) TCGA-QK-A6VC-01 4 69433570 69433570 C G UGT2B17 Missense_Mutation p.R211S 0.06 deleterious(0.01) possibly_damaging(0.847) TCGA-QK-A6VC-01 4 73149139 73149139 C T ADAMTS3 Missense_Mutation p.G1111D 0.12 tolerated_low_confidence(0.46) benign(0.001) TCGA-QK-A6VC-01 4 75673280 75673280 C T BTC Missense_Mutation p.E170K 0.18 deleterious(0) probably_damaging(0.956) TCGA-QK-A6VC-01 4 76726448 76726448 G C USO1 Missense_Mutation p.E770Q 0.08 tolerated(0.11) benign(0.209) TCGA-QK-A6VC-01 4 77979787 77979787 T A CCNI Missense_Mutation p.N39I 0.12 deleterious(0) benign(0.121) TCGA-QK-A6VC-01 4 79782574 79782574 C T BMP2K Missense_Mutation p.P340L 0.09 deleterious(0.02) possibly_damaging(0.65) TCGA-QK-A6VC-01 4 8608483 8608483 G T CPZ Missense_Mutation p.W309L 0.12 tolerated(0.05) benign(0.05) TCGA-QK-A6VC-01 4 96091445 96091445 C T UNC5C Silent p.A830A 0.10 TCGA-QK-A6VC-01 5 135286949 135286949 C G LECT2 Missense_Mutation p.K84N 0.11 tolerated(0.59) benign(0.007) TCGA-QK-A6VC-01 5 140481238 140481238 C A PCDHB3 Silent p.V335V 0.07 TCGA-QK-A6VC-01 5 79048590 79048590 A G CMYA5 Missense_Mutation p.S3695G 0.15 benign(0.123) TCGA-QK-A6VC-01 6 16247130 16247130 C T GMPR Missense_Mutation p.P49S 0.15 deleterious(0) probably_damaging(1) TCGA-QK-A6VC-01 6 26597380 26597380 T A ABT1 Missense_Mutation p.F57Y 0.11 deleterious(0.02) possibly_damaging(0.635) TCGA-QK-A6VC-01 6 31777941 31777941 C G HSPA1L Missense_Mutation p.Q603H 0.20 tolerated_low_confidence(0.05) possibly_damaging(0.478) TCGA-QK-A6VC-01 6 31905149 31905149 C G CFB Missense_Mutation p.L195V 0.06 tolerated(0.56) benign(0.001) TCGA-QK-A6VC-01 6 32135754 32135754 G T EGFL8 3'UTR 0.08 TCGA-QK-A6VC-01 6 35393642 35393642 A T PPARD Missense_Mutation p.E371V 0.11 deleterious(0) probably_damaging(0.999) TCGA-QK-A6VC-01 6 35773541 35773541 C G LHFPL5 Missense_Mutation p.L32V 0.20 deleterious(0.02) benign(0.438) TCGA-QK-A6VC-01 6 41658473 41658473 G C TFEB Silent p.S132S 0.22 TCGA-QK-A6VC-01 6 41753234 41753234 C T PRICKLE4 Missense_Mutation p.H180Y 0.12 deleterious(0.02) probably_damaging(1) TCGA-QK-A6VC-01 6 42638408 42638408 G C UBR2 Missense_Mutation p.L1347F 0.13 deleterious(0) probably_damaging(0.993) TCGA-QK-A6VC-01 6 47976658 47976658 C T PTCHD4 Missense_Mutation p.E207K 0.18 tolerated(0.92) benign(0.02) TCGA-QK-A6VC-01 6 56504321 56504321 T C DST Missense_Mutation p.K392R 0.24 probably_damaging(0.998) TCGA-QK-A6VC-01 6 75839860 75839860 G C COL12A1 Missense_Mutation p.Q2053E 0.08 possibly_damaging(0.519) TCGA-QK-A6VC-01 7 100016680 100016680 C G ZCWPW1 Intron 0.26 TCGA-QK-A6VC-01 7 103137151 103137151 G A RELN Silent p.Y3005Y 0.05 TCGA-QK-A6VC-01 7 103205798 103205798 C T RELN Missense_Mutation p.E1713K 0.23 tolerated(0.23) benign(0.142) TCGA-QK-A6VC-01 7 103251214 103251214 G A RELN Missense_Mutation p.S979L 0.06 tolerated(0.27) benign(0.097) TCGA-QK-A6VC-01 7 112099011 112099011 C G IFRD1 Missense_Mutation p.L169V 0.03 tolerated(0.12) benign(0.429) TCGA-QK-A6VC-01 7 128489448 128489448 C A FLNC Missense_Mutation p.A1672E 0.09 tolerated(0.19) possibly_damaging(0.734) TCGA-QK-A6VC-01 7 128582205 128582205 C A IRF5 Missense_Mutation p.Q24K 0.19 deleterious(0) possibly_damaging(0.622) TCGA-QK-A6VC-01 7 135080595 135080595 G C CNOT4 Nonsense_Mutation p.S307* 0.33 TCGA-QK-A6VC-01 7 149461881 149461881 G C ZNF467 Missense_Mutation p.H570Q 0.28 tolerated(0.19) benign(0.002) TCGA-QK-A6VC-01 7 150931199 150931199 C G CHPF2 Missense_Mutation p.I34M 0.05 tolerated(0.11) benign(0.027) TCGA-QK-A6VC-01 7 20682903 20682903 G A ABCB5 Silent p.K137K 0.08 TCGA-QK-A6VC-01 7 24720071 24720071 G A MPP6 Missense_Mutation p.E460K 0.16 tolerated(0.48) benign(0.021) TCGA-QK-A6VC-01 7 29544431 29544431 G A CHN2 Missense_Mutation p.D329N 0.07 deleterious(0) possibly_damaging(0.734) TCGA-QK-A6VC-01 7 44251862 44251862 C G YKT6 Nonsense_Mutation p.S193* 0.05 TCGA-QK-A6VC-01 7 86794265 86794265 C G DMTF1 Missense_Mutation p.T3R 0.06 deleterious_low_confidence(0.02) benign(0.015) TCGA-QK-A6VC-01 7 89891339 89891339 G A C7orf63 Missense_Mutation p.E109K 0.05 tolerated(0.05) benign(0.014) TCGA-QK-A6VC-01 7 92355095 92355095 G A CDK6 Nonsense_Mutation p.Q128* 0.03 TCGA-QK-A6VC-01 7 94049930 94049930 C A COL1A2 Silent p.P755P 0.16 TCGA-QK-A6VC-01 7 99811662 99811662 C A STAG3 3'UTR 0.06 TCGA-QK-A6VC-01 8 103354814 103354814 C G UBR5 Missense_Mutation p.D329H 0.06 deleterious(0) probably_damaging(0.986) TCGA-QK-A6VC-01 8 113259262 113259262 C T CSMD3 Silent p.Q3403Q 0.21 TCGA-QK-A6VC-01 8 113358346 113358346 A C CSMD3 Missense_Mutation p.I2141R 0.12 deleterious(0) probably_damaging(0.916) TCGA-QK-A6VC-01 8 114448933 114448933 A C CSMD3 Missense_Mutation p.F51V 0.09 tolerated_low_confidence(0.18) benign(0.065) TCGA-QK-A6VC-01 8 120103455 120103455 G A COLEC10 Silent p.K96K 0.23 TCGA-QK-A6VC-01 8 144643207 144643207 G A GSDMD Silent p.T205T 0.17 TCGA-QK-A6VC-01 8 144732950 144732950 G A ZNF623 Missense_Mutation p.R303H 0.10 tolerated(0.14) possibly_damaging(0.873) TCGA-QK-A6VC-01 8 31012227 31012227 A G WRN Missense_Mutation p.M1259V 0.06 tolerated(0.37) benign(0) TCGA-QK-A6VC-01 8 37607144 37607144 C T ERLIN2 Silent p.V164V 0.24 TCGA-QK-A6VC-01 8 38162107 38162107 C G WHSC1L1 Missense_Mutation p.R870T 0.06 deleterious(0) probably_damaging(0.998) TCGA-QK-A6VC-01 8 8239028 8239028 G A SGK223 Missense_Mutation p.S77L 0.17 benign(0.003) TCGA-QK-A6VC-01 8 97621783 97621783 A G SDC2 3'UTR 0.09 TCGA-QK-A6VC-01 9 114454526 114454526 G A C9orf84 Missense_Mutation p.P1180L 0.12 deleterious(0) probably_damaging(0.967) TCGA-QK-A6VC-01 9 116048543 116048543 G A PRPF4 Missense_Mutation p.D262N 0.08 tolerated(0.17) possibly_damaging(0.802) TCGA-QK-A6VC-01 9 35243359 35243359 G C UNC13B Missense_Mutation p.E156Q 0.11 tolerated_low_confidence(0.11) benign(0.002) TCGA-QK-A6VC-01 9 35725710 35725710 C G TLN1 5'UTR 0.25 TCGA-QK-A6VC-01 9 72501807 72501807 C A C9orf135 Missense_Mutation p.P168Q 0.15 deleterious(0.01) possibly_damaging(0.848) TCGA-QK-A6VC-01 X 129518519 129518519 G C GPR119 Silent p.L301L 0.08 TCGA-QK-A6VC-01 X 138820219 138820219 G C ATP11C Silent p.L1051L 0.05 TCGA-QK-A6VC-01 X 152823653 152823653 C T ATP2B3 Silent p.V839V 0.11 TCGA-QK-A6VC-01 X 153674848 153674848 G C FAM50A Missense_Mutation p.E128Q 0.09 tolerated(0.06) benign(0.213) TCGA-QK-A6VC-01 X 24844702 24844702 C T POLA1 Silent p.L1234L 0.09 TCGA-QK-A6VC-01 X 29414440 29414440 G A IL1RAPL1 Missense_Mutation p.C143Y 0.06 deleterious(0) probably_damaging(0.991) TCGA-QK-A6VC-01 X 295078 295078 G A PPP2R3B 3'UTR 0.16 TCGA-QK-A6VC-01 X 36162722 36162722 T A CHDC2 Missense_Mutation p.S435R 0.11 deleterious_low_confidence(0) benign(0.307) TCGA-QK-A6VC-01 X 63576113 63576113 C T MTMR8 Missense_Mutation p.D85N 0.09 tolerated(0.09) benign(0.007) TCGA-QK-A6VC-01 X 70775082 70775082 T G OGT Missense_Mutation p.N257K 0.19 deleterious(0.03) probably_damaging(0.914) TCGA-QK-A6VC-01 X 71792516 71792516 G T HDAC8 Silent p.A32A 0.11 TCGA-QK-A6VC-01 X 76872081 76872081 C A ATRX Missense_Mutation p.G1856C 0.08 probably_damaging(0.995) TCGA-QK-A8Z7-01 10 120796628 120796628 T C EIF3A Intron 0.36 TCGA-QK-A8Z7-01 10 120809388 120809388 C T EIF3A Silent p.R861R 0.34 TCGA-QK-A8Z7-01 10 120840149 120840149 G A EIF3A Missense_Mutation p.R14C 0.55 deleterious(0) unknown(0) TCGA-QK-A8Z7-01 10 125528044 125528044 C T CPXM2 Missense_Mutation p.G433R 0.35 tolerated(0.54) possibly_damaging(0.717) TCGA-QK-A8Z7-01 10 129874990 129874990 C G PTPRE Missense_Mutation p.Q575E 0.32 tolerated(0.16) possibly_damaging(0.601) TCGA-QK-A8Z7-01 10 26443684 26443684 G T MYO3A Nonsense_Mutation p.G909* 0.42 TCGA-QK-A8Z7-01 10 48429054 48429054 C T GDF10 Missense_Mutation p.A278T 0.35 tolerated(0.34) benign(0.003) TCGA-QK-A8Z7-01 10 5788805 5788805 T C FAM208B Silent p.L1141L 0.37 TCGA-QK-A8Z7-01 10 64975341 64975341 C G JMJD1C Missense_Mutation p.R265P 0.28 deleterious(0) probably_damaging(0.946) TCGA-QK-A8Z7-01 10 72358471 72358471 G T PRF1 Missense_Mutation p.P336T 0.39 deleterious(0) probably_damaging(1) TCGA-QK-A8Z7-01 11 113075082 113075082 C T NCAM1 Missense_Mutation p.R127W 0.45 deleterious(0.01) possibly_damaging(0.863) TCGA-QK-A8Z7-01 11 126081423 126081423 G A RPUSD4 Silent p.A37A 0.47 TCGA-QK-A8Z7-01 11 133789962 133789962 C T IGSF9B Missense_Mutation p.A1220T 0.46 deleterious_low_confidence(0.05) benign(0.121) TCGA-QK-A8Z7-01 11 251889 251889 C T PSMD13 Nonsense_Mutation p.R332* 0.20 TCGA-QK-A8Z7-01 11 26619920 26619920 T A ANO3 Missense_Mutation p.F486I 0.15 deleterious(0) probably_damaging(0.98) TCGA-QK-A8Z7-01 11 56086206 56086206 C G OR8K3 Missense_Mutation p.Q142E 0.46 deleterious_low_confidence(0.02) benign(0.271) TCGA-QK-A8Z7-01 11 56950010 56950010 G A LRRC55 Missense_Mutation p.G215R 0.38 deleterious(0.01) possibly_damaging(0.885) TCGA-QK-A8Z7-01 11 61295549 61295549 C T SYT7 Missense_Mutation p.V229M 0.26 deleterious(0) probably_damaging(0.969) TCGA-QK-A8Z7-01 11 61539354 61539354 C T MYRF Nonsense_Mutation p.Q349* 0.28 TCGA-QK-A8Z7-01 11 62376848 62376848 C A EML3 Nonsense_Mutation p.E246* 0.62 TCGA-QK-A8Z7-01 11 64434817 64434817 T A NRXN2 Missense_Mutation p.D568V 0.24 deleterious(0) benign(0) TCGA-QK-A8Z7-01 11 66802276 66802276 G T SYT12 Missense_Mutation p.K65N 0.21 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-QK-A8Z7-01 11 67354067 67354067 G A GSTP1 3'UTR 0.10 TCGA-QK-A8Z7-01 11 7021011 7021011 T C ZNF214 3'UTR 0.23 TCGA-QK-A8Z7-01 11 71729878 71729878 T C NUMA1 Missense_Mutation p.T245A 0.28 benign(0.213) TCGA-QK-A8Z7-01 11 76255458 76255458 C T C11orf30 Silent p.S955S 0.45 TCGA-QK-A8Z7-01 11 7981913 7981913 G T NLRP10 Missense_Mutation p.L416I 0.14 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z7-01 11 83810035 83810035 C T DLG2 Missense_Mutation p.G227E 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-QK-A8Z7-01 12 110252321 110252321 G A TRPV4 Missense_Mutation p.S94L 0.30 deleterious(0.03) benign(0.077) TCGA-QK-A8Z7-01 12 111064170 111064170 C T TCTN1 Silent p.G115G 0.44 TCGA-QK-A8Z7-01 12 119583391 119583391 A G SRRM4 Missense_Mutation p.N326S 0.57 deleterious_low_confidence(0.05) probably_damaging(0.953) TCGA-QK-A8Z7-01 12 20803514 20803514 G T PDE3A Missense_Mutation p.V969F 0.06 deleterious(0) possibly_damaging(0.74) TCGA-QK-A8Z7-01 12 49491430 49491430 T C LMBR1L 3'UTR 0.45 TCGA-QK-A8Z7-01 12 52941979 52941979 G A KRT71 Missense_Mutation p.A312V 0.36 deleterious(0) possibly_damaging(0.816) TCGA-QK-A8Z7-01 12 53901159 53901159 C T NPFF Missense_Mutation p.A34T 0.08 tolerated(0.61) benign(0.005) TCGA-QK-A8Z7-01 12 70713123 70713123 G A CNOT2 Missense_Mutation p.A73T 0.21 deleterious_low_confidence(0) benign(0.241) TCGA-QK-A8Z7-01 13 21396296 21396297 - AA XPO4 Frame_Shift_Ins p.E325Lfs*5 0.10 TCGA-QK-A8Z7-01 13 21732143 21732143 G A SKA3 Missense_Mutation p.S346L 0.26 tolerated(0.23) benign(0.397) TCGA-QK-A8Z7-01 13 37399619 37399619 G A RFXAP Missense_Mutation p.D219N 0.32 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-QK-A8Z7-01 13 40325082 40325082 G C COG6 Splice_Site p.X609_splice 0.07 TCGA-QK-A8Z7-01 13 52661591 52661591 C T NEK5 Splice_Site p.X426_splice 0.54 TCGA-QK-A8Z7-01 13 53420293 53420293 C A PCDH8 Missense_Mutation p.C760F 0.05 deleterious(0) probably_damaging(0.995) TCGA-QK-A8Z7-01 13 79176022 79176022 G A POU4F1 Missense_Mutation p.T263M 0.38 tolerated(0.07) unknown(0) TCGA-QK-A8Z7-01 14 105180723 105180723 G A INF2 Missense_Mutation p.R1075H 0.87 deleterious_low_confidence(0) unknown(0) TCGA-QK-A8Z7-01 14 21829342 21829342 G T SUPT16H Silent p.P608P 0.67 TCGA-QK-A8Z7-01 14 73440836 73440836 C T ZFYVE1 Missense_Mutation p.V685M 0.17 deleterious(0.03) possibly_damaging(0.781) TCGA-QK-A8Z7-01 15 25971150 25971150 G A ATP10A Silent p.D309D 0.21 TCGA-QK-A8Z7-01 15 40293396 40293396 G A EIF2AK4 Missense_Mutation p.D1044N 0.19 tolerated(0.06) possibly_damaging(0.885) TCGA-QK-A8Z7-01 15 41191868 41191868 C T VPS18 Silent p.F284F 0.25 TCGA-QK-A8Z7-01 15 70961531 70961531 C T UACA Missense_Mutation p.A498T 0.53 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z7-01 16 1254215 1254215 C T CACNA1H Silent p.H736H 0.16 TCGA-QK-A8Z7-01 16 33020539 33020539 A T IGHV3OR16-8 Missense_Mutation p.K15I 0.27 deleterious_low_confidence(0) benign(0.051) TCGA-QK-A8Z7-01 16 3613872 3613872 G A NLRC3 Missense_Mutation p.P403S 0.36 tolerated(0.08) benign(0.001) TCGA-QK-A8Z7-01 16 75204063 75204063 A G ZFP1 Missense_Mutation p.Y352C 0.09 deleterious(0) probably_damaging(1) TCGA-QK-A8Z7-01 17 32957035 32957035 G - TMEM132E Frame_Shift_Del p.I360Sfs*7 0.29 TCGA-QK-A8Z7-01 17 34539766 34539766 A T CCL4L1 Intron 0.33 TCGA-QK-A8Z7-01 17 36398247 36398247 G A RP11-1407O15.2 Missense_Mutation p.T104I 0.33 TCGA-QK-A8Z7-01 17 39920973 39920973 T C JUP Missense_Mutation p.T384A 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-QK-A8Z7-01 17 44039726 44039726 T C MAPT Missense_Mutation p.F8S 0.84 tolerated(0.07) probably_damaging(0.999) TCGA-QK-A8Z7-01 17 57746271 57746271 C A CLTC Nonsense_Mutation p.Y754* 0.35 TCGA-QK-A8Z7-01 17 58740623 58740623 C T PPM1D Nonsense_Mutation p.Q510* 0.26 TCGA-QK-A8Z7-01 17 73775146 73775146 T A H3F3B Missense_Mutation p.K37M 0.53 deleterious_low_confidence(0.01) benign(0.019) TCGA-QK-A8Z7-01 17 74068434 74068434 C T SRP68 Missense_Mutation p.G47R 0.27 tolerated(0.49) benign(0.201) TCGA-QK-A8Z7-01 17 7416817 7416817 G A POLR2A Missense_Mutation p.S1745N 0.70 unknown(0) TCGA-QK-A8Z7-01 17 7578239 7578239 C A TP53 Nonsense_Mutation p.E204* 0.59 TCGA-QK-A8Z7-01 17 78023975 78023975 G A CCDC40 Missense_Mutation p.R351H 0.27 tolerated(0.08) benign(0.015) TCGA-QK-A8Z7-01 17 79268721 79268721 T C SLC38A10 Translation_Start_Site p.M1? 0.60 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-QK-A8Z7-01 17 8077910 8077910 G A TMEM107 Missense_Mutation p.S100F 0.73 deleterious(0) possibly_damaging(0.864) TCGA-QK-A8Z7-01 18 31318530 31318530 G T ASXL3 Missense_Mutation p.G388W 0.33 probably_damaging(0.999) TCGA-QK-A8Z7-01 18 33795625 33795625 G A MOCOS Silent p.G494G 0.06 TCGA-QK-A8Z7-01 18 64176456 64176456 C A CDH19 Missense_Mutation p.R535I 0.21 deleterious(0) probably_damaging(0.97) TCGA-QK-A8Z7-01 19 10679283 10679283 G T CDKN2D Missense_Mutation p.A16E 0.30 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z7-01 19 16638968 16638968 G T CHERP Missense_Mutation p.P410T 0.29 tolerated_low_confidence(0.12) benign(0.086) TCGA-QK-A8Z7-01 19 17306179 17306179 G A MYO9B Missense_Mutation p.G1315S 0.16 deleterious(0.04) probably_damaging(0.983) TCGA-QK-A8Z7-01 19 24288784 24288784 G A ZNF254 Missense_Mutation p.E25K 0.34 tolerated(0.06) possibly_damaging(0.85) TCGA-QK-A8Z7-01 19 39234622 39234622 G A CAPN12 Nonsense_Mutation p.Q62* 0.06 TCGA-QK-A8Z7-01 19 39330750 39330751 - A AC104534.3 Frame_Shift_Ins p.G24Wfs*22 0.28 TCGA-QK-A8Z7-01 19 40317350 40317350 C T DYRK1B Missense_Mutation p.C458Y 0.23 tolerated(0.11) benign(0.131) TCGA-QK-A8Z7-01 19 40434017 40434017 G A FCGBP Silent p.P84P 0.45 TCGA-QK-A8Z7-01 19 43702201 43702201 T A PSG4 Silent p.I219I 0.14 TCGA-QK-A8Z7-01 19 4538603 4538603 C A LRG1 Silent p.L131L 0.28 TCGA-QK-A8Z7-01 19 45851307 45851307 A G KLC3 Missense_Mutation p.Y223C 0.42 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z7-01 19 48806100 48806100 C T CCDC114 Missense_Mutation p.S327N 0.70 tolerated(0.17) benign(0.009) TCGA-QK-A8Z7-01 19 49901254 49901254 C T CCDC155 Silent p.D161D 0.63 TCGA-QK-A8Z7-01 19 51328987 51328987 C T KLK15 3'Flank 0.71 TCGA-QK-A8Z7-01 19 55494318 55494318 C A NLRP2 Missense_Mutation p.P418T 0.25 tolerated(0.07) benign(0.079) TCGA-QK-A8Z7-01 19 9049102 9049103 - A MUC16 Frame_Shift_Ins p.H10844Pfs*2 0.26 TCGA-QK-A8Z7-01 19 9060646 9060646 G T MUC16 Missense_Mutation p.L8934I 0.30 unknown(0) TCGA-QK-A8Z7-01 19 9967987 9967987 G A OLFM2 Missense_Mutation p.R178W 0.08 deleterious(0) probably_damaging(0.997) TCGA-QK-A8Z7-01 1 1021358 1021358 G A C1orf159 Silent p.G115G 0.14 TCGA-QK-A8Z7-01 1 1021359 1021359 C A C1orf159 Missense_Mutation p.G115V 0.14 deleterious(0) probably_damaging(0.991) TCGA-QK-A8Z7-01 1 102290593 102290593 A C OLFM3 Missense_Mutation p.M194R 0.40 tolerated(0.38) probably_damaging(0.942) TCGA-QK-A8Z7-01 1 117122372 117122372 G A IGSF3 Silent p.S1012S 0.12 TCGA-QK-A8Z7-01 1 161197105 161197105 G T TOMM40L Missense_Mutation p.A81S 0.36 deleterious(0.04) benign(0.248) TCGA-QK-A8Z7-01 1 183195922 183195922 G C LAMC2 Missense_Mutation p.V386L 0.08 tolerated(0.07) benign(0.098) TCGA-QK-A8Z7-01 1 197316469 197316469 G A CRB1 Splice_Site p.X283_splice 0.06 TCGA-QK-A8Z7-01 1 28904153 28904156 GCCA - TRNAU1AP 3'UTR 0.52 TCGA-QK-A8Z7-01 1 31418318 31418318 G C PUM1 Missense_Mutation p.R957G 0.69 deleterious(0.04) benign(0.005) TCGA-QK-A8Z7-01 1 48694750 48694750 T A SLC5A9 Intron 0.04 TCGA-QK-A8Z7-01 20 13894567 13894567 G T SEL1L2 Missense_Mutation p.A137E 0.34 deleterious(0) probably_damaging(0.975) TCGA-QK-A8Z7-01 20 61471965 61471965 G C COL9A3 Missense_Mutation p.D646H 0.45 deleterious(0.01) probably_damaging(0.995) TCGA-QK-A8Z7-01 21 46058062 46058062 T G KRTAP10-10 Missense_Mutation p.L243R 0.53 tolerated(0.26) possibly_damaging(0.854) TCGA-QK-A8Z7-01 22 17578709 17578709 G T IL17RA Missense_Mutation p.W62C 0.15 deleterious(0) probably_damaging(1) TCGA-QK-A8Z7-01 22 24837117 24837117 G A ADORA2A Missense_Mutation p.R300H 0.14 tolerated(0.32) benign(0.001) TCGA-QK-A8Z7-01 22 37471214 37471214 C A TMPRSS6 Missense_Mutation p.G444C 0.30 deleterious(0) probably_damaging(1) TCGA-QK-A8Z7-01 2 11053470 11053470 C G KCNF1 Missense_Mutation p.H306Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z7-01 2 141739846 141739846 C A LRP1B Splice_Site p.X924_splice 0.67 TCGA-QK-A8Z7-01 2 164468152 164468152 C T FIGN Missense_Mutation p.A64T 0.04 deleterious(0) probably_damaging(0.977) TCGA-QK-A8Z7-01 2 16742741 16742741 G A FAM49A Missense_Mutation p.R166C 0.06 deleterious(0) probably_damaging(0.946) TCGA-QK-A8Z7-01 2 178301583 178301583 A C AGPS Missense_Mutation p.E178A 0.07 tolerated(0.1) benign(0.004) TCGA-QK-A8Z7-01 2 179558368 179558368 G A TTN Missense_Mutation p.A10521V 0.93 TCGA-QK-A8Z7-01 2 179613753 179613753 A G TTN Intron 0.79 TCGA-QK-A8Z7-01 2 220136572 220136572 A G TUBA4B RNA 0.57 TCGA-QK-A8Z7-01 2 239975193 239975193 C A HDAC4 Missense_Mutation p.A1060S 0.76 deleterious(0.01) benign(0.38) TCGA-QK-A8Z7-01 2 55464538 55464538 A T MTIF2 Missense_Mutation p.S633T 0.30 tolerated(0.75) benign(0.001) TCGA-QK-A8Z7-01 2 72740282 72740282 G T EXOC6B Silent p.I382I 0.41 TCGA-QK-A8Z7-01 2 74320729 74320729 C A TET3 Missense_Mutation p.A933D 0.54 deleterious(0) probably_damaging(1) TCGA-QK-A8Z7-01 2 74709145 74709145 G T CCDC142 Missense_Mutation p.L274M 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-QK-A8Z7-01 2 98273920 98273920 G A ACTR1B Silent p.I326I 0.40 TCGA-QK-A8Z7-01 2 99722114 99722114 C G TSGA10 Missense_Mutation p.C86S 0.03 tolerated(0.34) benign(0.006) TCGA-QK-A8Z7-01 3 108373054 108373054 G A DZIP3 Missense_Mutation p.S699N 0.44 tolerated_low_confidence(0.37) benign(0.001) TCGA-QK-A8Z7-01 3 121416012 121416012 T C GOLGB1 Missense_Mutation p.I1120V 0.48 benign(0.03) TCGA-QK-A8Z7-01 3 124103805 124103805 C T KALRN Silent p.I626I 0.42 TCGA-QK-A8Z7-01 3 140407285 140407285 C T TRIM42 Silent p.S587S 0.26 TCGA-QK-A8Z7-01 3 186978640 186978640 T A MASP1 Missense_Mutation p.R146W 0.71 deleterious(0.01) possibly_damaging(0.649) TCGA-QK-A8Z7-01 3 191047497 191047497 C T CCDC50 Missense_Mutation p.P12S 0.68 deleterious(0.04) benign(0.019) TCGA-QK-A8Z7-01 3 196281084 196281085 AA - WDR53 Frame_Shift_Del p.F358L 0.10 TCGA-QK-A8Z7-01 4 119951472 119951472 A T SYNPO2 Silent p.V514V 0.25 TCGA-QK-A8Z7-01 4 134072357 134072357 C T PCDH10 Silent p.N354N 0.60 TCGA-QK-A8Z7-01 4 155507514 155507514 C A FGA Missense_Mutation p.S356I 0.68 deleterious_low_confidence(0.01) possibly_damaging(0.806) TCGA-QK-A8Z7-01 4 48073587 48073587 G A TXK Missense_Mutation p.P488S 0.55 deleterious(0) probably_damaging(1) TCGA-QK-A8Z7-01 4 76841945 76841945 C T NAAA Missense_Mutation p.R283Q 0.09 tolerated(0.16) benign(0.094) TCGA-QK-A8Z7-01 4 88732928 88732928 G C IBSP Missense_Mutation p.G274R 0.09 deleterious(0) probably_damaging(0.938) TCGA-QK-A8Z7-01 5 1087063 1087063 C A SLC12A7 Silent p.T210T 0.38 TCGA-QK-A8Z7-01 5 11346520 11346520 C G CTNND2 Missense_Mutation p.R531T 0.27 deleterious(0) possibly_damaging(0.811) TCGA-QK-A8Z7-01 5 118529659 118529659 C A DMXL1 Nonsense_Mutation p.S2484* 0.64 TCGA-QK-A8Z7-01 5 140774102 140774102 C T PCDHGA8 Silent p.G574G 0.67 TCGA-QK-A8Z7-01 5 141974875 141974875 G T FGF1 Missense_Mutation p.L150M 0.70 tolerated(1) probably_damaging(0.998) TCGA-QK-A8Z7-01 5 16091177 16091177 G T MARCH11 Missense_Mutation p.S236Y 0.43 deleterious(0) probably_damaging(0.947) TCGA-QK-A8Z7-01 5 179440198 179440198 G A RNF130 Missense_Mutation p.P186S 0.71 tolerated(0.41) benign(0.007) TCGA-QK-A8Z7-01 5 26885845 26885846 CG - CDH9 Frame_Shift_Del p.R587Cfs*6 0.20 TCGA-QK-A8Z7-01 5 33937022 33937022 C T RXFP3 Silent p.G59G 0.09 TCGA-QK-A8Z7-01 5 35072844 35072844 G C PRLR Missense_Mutation p.Q126E 0.32 tolerated(1) benign(0.001) TCGA-QK-A8Z7-01 5 76326776 76326776 G T AGGF1 Missense_Mutation p.S62I 0.69 deleterious(0.01) benign(0.235) TCGA-QK-A8Z7-01 6 13365622 13365622 C T GFOD1 Missense_Mutation p.V176M 0.65 tolerated(0.27) possibly_damaging(0.532) TCGA-QK-A8Z7-01 6 138655203 138655203 C T KIAA1244 Silent p.P1740P 0.51 TCGA-QK-A8Z7-01 6 155578022 155578022 C G TIAM2 Missense_Mutation p.P1625A 0.49 tolerated_low_confidence(0.08) benign(0.142) TCGA-QK-A8Z7-01 6 27775992 27775992 C T HIST1H2AI Missense_Mutation p.S2F 0.58 deleterious_low_confidence(0.01) benign(0.184) TCGA-QK-A8Z7-01 6 37411926 37411926 G A CMTR1 Missense_Mutation p.M95I 0.67 deleterious(0) possibly_damaging(0.811) TCGA-QK-A8Z7-01 6 46657616 46657616 G C TDRD6 Missense_Mutation p.R584T 0.28 deleterious(0) probably_damaging(0.955) TCGA-QK-A8Z7-01 6 90605608 90605608 C G GJA10 Missense_Mutation p.T474S 0.41 tolerated(0.43) benign(0.007) TCGA-QK-A8Z7-01 7 100683582 100683582 C A MUC17 Missense_Mutation p.S2962Y 0.35 probably_damaging(0.978) TCGA-QK-A8Z7-01 7 107414497 107414497 C T SLC26A3 Silent p.L625L 0.04 TCGA-QK-A8Z7-01 7 110763329 110763329 T A LRRN3 Silent p.L167L 0.50 TCGA-QK-A8Z7-01 7 116164935 116164935 C A CAV1 5'UTR 0.18 TCGA-QK-A8Z7-01 7 122342525 122342525 T A RNF148 Missense_Mutation p.R94W 0.39 tolerated(0.15) probably_damaging(0.998) TCGA-QK-A8Z7-01 7 143882822 143882822 C T CTAGE4 Silent p.F742F 0.18 TCGA-QK-A8Z7-01 7 148801826 148801826 C T ZNF425 Silent p.T379T 0.05 TCGA-QK-A8Z7-01 7 2275060 2275060 C T FTSJ2 Silent p.R146R 0.51 TCGA-QK-A8Z7-01 7 5643496 5643496 G C FSCN1 Missense_Mutation p.D372H 0.46 deleterious(0.03) benign(0.029) TCGA-QK-A8Z7-01 7 57188776 57188776 C A ZNF479 Nonsense_Mutation p.G116* 0.07 TCGA-QK-A8Z7-01 7 82585100 82585100 G A PCLO Silent p.S1723S 0.57 TCGA-QK-A8Z7-01 7 86998740 86998740 G A CROT Missense_Mutation p.R227Q 0.44 deleterious(0.01) probably_damaging(0.967) TCGA-QK-A8Z7-01 7 95034721 95034721 C T PON2 Missense_Mutation p.G329E 0.08 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z7-01 8 105502835 105502835 A - LRP12 3'UTR 0.12 TCGA-QK-A8Z7-01 8 121290456 121290456 G A COL14A1 Missense_Mutation p.G1107E 0.36 deleterious(0) probably_damaging(1) TCGA-QK-A8Z7-01 8 23198591 23198591 G T LOXL2 Missense_Mutation p.D219E 0.33 deleterious(0) possibly_damaging(0.734) TCGA-QK-A8Z7-01 9 106876282 106876282 G A SMC2 Silent p.Q484Q 0.06 TCGA-QK-A8Z7-01 9 108456925 108456925 C T TMEM38B 5'UTR 0.35 TCGA-QK-A8Z7-01 9 113220821 113220821 G A SVEP1 Missense_Mutation p.A1169V 0.33 probably_damaging(0.981) TCGA-QK-A8Z7-01 9 136340583 136340583 C T SLC2A6 Missense_Mutation p.R238H 0.36 deleterious(0.02) probably_damaging(1) TCGA-QK-A8Z7-01 9 138376947 138376947 C A PPP1R26 Silent p.G197G 0.05 TCGA-QK-A8Z7-01 9 139395258 139395258 C T NOTCH1 Missense_Mutation p.G1894S 0.52 tolerated(0.17) probably_damaging(0.955) TCGA-QK-A8Z7-01 9 139405702 139405702 A T NOTCH1 Missense_Mutation p.L830Q 0.47 tolerated(0.06) benign(0.285) TCGA-QK-A8Z7-01 9 140707501 140707501 G T EHMT1 Nonsense_Mutation p.E971* 0.28 TCGA-QK-A8Z7-01 9 33221053 33221053 A T SPINK4 Missense_Mutation p.D26V 0.76 deleterious_low_confidence(0.04) unknown(0) TCGA-QK-A8Z7-01 9 79322473 79322473 G A PRUNE2 Nonsense_Mutation p.Q1573* 0.12 TCGA-QK-A8Z7-01 9 96289498 96289498 C T FAM120A Nonsense_Mutation p.R494* 0.21 TCGA-QK-A8Z7-01 X 135593930 135593930 T A HTATSF1 Missense_Mutation p.S676T 0.09 deleterious_low_confidence(0) benign(0.184) TCGA-QK-A8Z7-01 X 7252104 7252104 A G STS Missense_Mutation p.Y445C 0.77 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 10 115312782 115312782 G A HABP2 5'Flank 0.29 TCGA-QK-A8Z8-01 10 116887418 116887418 G - ATRNL1 Frame_Shift_Del p.G185Afs*15 0.26 TCGA-QK-A8Z8-01 10 119042696 119042696 C A PDZD8 3'UTR 0.25 TCGA-QK-A8Z8-01 10 12867821 12867821 G T CAMK1D Intron 0.27 TCGA-QK-A8Z8-01 10 134664626 134664626 C A TTC40 Missense_Mutation p.G1920C 0.22 deleterious(0.02) probably_damaging(0.951) TCGA-QK-A8Z8-01 10 17373447 17373448 - C ST8SIA6 Frame_Shift_Ins p.E161Gfs*5 0.21 TCGA-QK-A8Z8-01 10 21414891 21414891 T A C10orf113 Missense_Mutation p.D110V 0.54 deleterious(0) possibly_damaging(0.904) TCGA-QK-A8Z8-01 10 45878011 45878011 G A ALOX5 Silent p.L77L 0.34 TCGA-QK-A8Z8-01 10 50701165 50701175 TTTTGTGGGTA - ERCC6 Nonsense_Mutation p.Y603* 0.26 TCGA-QK-A8Z8-01 10 50819588 50819588 G C SLC18A3 Missense_Mutation p.A268P 0.25 tolerated(0.26) possibly_damaging(0.884) TCGA-QK-A8Z8-01 10 6539186 6539186 G T PRKCQ Nonsense_Mutation p.C190* 0.47 TCGA-QK-A8Z8-01 10 69281720 69281720 C A CTNNA3 Splice_Site p.X154_splice 0.27 TCGA-QK-A8Z8-01 10 72520125 72520125 G T ADAMTS14 Missense_Mutation p.C1066F 0.27 deleterious(0) probably_damaging(0.953) TCGA-QK-A8Z8-01 10 76854571 76854571 T C DUSP13 Missense_Mutation p.M204V 0.34 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z8-01 10 84733566 84733566 C A NRG3 Missense_Mutation p.P436H 0.36 deleterious(0.03) possibly_damaging(0.889) TCGA-QK-A8Z8-01 10 94834754 94834754 G A CYP26A1 Silent p.V211V 0.32 TCGA-QK-A8Z8-01 10 98799785 98799785 G T SLIT1 Silent p.R753R 0.23 TCGA-QK-A8Z8-01 10 99203063 99203063 T A EXOSC1 Silent p.P51P 0.32 TCGA-QK-A8Z8-01 11 105923675 105923675 C G KBTBD3 Missense_Mutation p.E581Q 0.10 tolerated(0.13) probably_damaging(0.994) TCGA-QK-A8Z8-01 11 117299172 117299172 G A DSCAML1 Nonsense_Mutation p.R2072* 0.64 TCGA-QK-A8Z8-01 11 13514017 13514017 C A PTH Nonsense_Mutation p.E95* 0.60 TCGA-QK-A8Z8-01 11 46515686 46515686 C T AMBRA1 Missense_Mutation p.R713H 0.83 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-QK-A8Z8-01 11 55587658 55587658 C T OR5D18 Silent p.L185L 0.68 TCGA-QK-A8Z8-01 11 60233490 60233490 C A MS4A1 Missense_Mutation p.H145N 0.75 tolerated(0.18) benign(0.186) TCGA-QK-A8Z8-01 11 65810520 65810520 G T GAL3ST3 Silent p.R252R 0.59 TCGA-QK-A8Z8-01 11 68747753 68747753 G A MRGPRD Silent p.L235L 0.39 TCGA-QK-A8Z8-01 11 9042507 9042507 G A SCUBE2 3'UTR 0.68 TCGA-QK-A8Z8-01 11 94918607 94918607 T C SESN3 Missense_Mutation p.H192R 0.68 deleterious(0.03) benign(0.411) TCGA-QK-A8Z8-01 12 10223974 10223974 C G CLEC1A Missense_Mutation p.E267D 0.29 tolerated(0.08) benign(0.107) TCGA-QK-A8Z8-01 12 105418088 105418088 G A ALDH1L2 3'UTR 0.29 TCGA-QK-A8Z8-01 12 110957688 110957688 C G RAD9B Missense_Mutation p.P286R 0.47 tolerated(0.14) probably_damaging(0.909) TCGA-QK-A8Z8-01 12 11214435 11214435 T C TAS2R46 Missense_Mutation p.I153M 0.31 tolerated(0.99) benign(0.007) TCGA-QK-A8Z8-01 12 112600979 112600979 C T HECTD4 Silent p.E4183E 0.18 TCGA-QK-A8Z8-01 12 11285910 11285910 T C TAS2R30 Missense_Mutation p.T312A 0.40 tolerated_low_confidence(0.44) benign(0.007) TCGA-QK-A8Z8-01 12 113759145 113759145 C T SLC8B1 Silent p.K55K 0.28 TCGA-QK-A8Z8-01 12 123087383 123087383 A G KNTC1 Silent p.E1611E 0.27 TCGA-QK-A8Z8-01 12 124335521 124335521 C A DNAH10 Silent p.P1945P 0.29 TCGA-QK-A8Z8-01 12 124364348 124364348 G A DNAH10 Silent p.Q2760Q 0.25 TCGA-QK-A8Z8-01 12 132627289 132627289 G T DDX51 Silent p.I218I 0.35 TCGA-QK-A8Z8-01 12 133195507 133195507 G A P2RX2 Silent p.V35V 0.33 TCGA-QK-A8Z8-01 12 133219562 133219562 G A POLE Silent p.P1524P 0.09 TCGA-QK-A8Z8-01 12 21051404 21051404 G C SLCO1B3 Missense_Mutation p.G573R 0.30 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z8-01 12 21205160 21205160 G - SLCO1B7 Frame_Shift_Del p.G441Dfs*12 0.25 TCGA-QK-A8Z8-01 12 31545284 31545284 A G DENND5B Missense_Mutation p.V1128A 0.30 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 12 40265747 40265747 T A SLC2A13 Missense_Mutation p.I351F 0.39 deleterious(0) probably_damaging(0.967) TCGA-QK-A8Z8-01 12 45410190 45410190 T C DBX2 Missense_Mutation p.E300G 0.32 tolerated_low_confidence(0.07) benign(0.059) TCGA-QK-A8Z8-01 12 55615193 55615193 C A OR10A7 Missense_Mutation p.P129T 0.36 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z8-01 12 6638760 6638760 G T NCAPD2 Splice_Site p.X1218_splice 0.25 TCGA-QK-A8Z8-01 12 68647192 68647192 T G IL22 Missense_Mutation p.M13L 0.39 tolerated(0.53) benign(0.001) TCGA-QK-A8Z8-01 12 70724182 70724182 A G CNOT2 Missense_Mutation p.R168G 0.36 tolerated(0.22) possibly_damaging(0.626) TCGA-QK-A8Z8-01 12 7585151 7585151 A G CD163L1 Silent p.N209N 0.33 TCGA-QK-A8Z8-01 12 7586251 7586251 C T CD163L1 Missense_Mutation p.G55D 0.38 tolerated(0.82) benign(0.067) TCGA-QK-A8Z8-01 12 80771803 80771803 T G OTOGL Missense_Mutation p.I2337R 0.38 deleterious(0.01) benign(0.199) TCGA-QK-A8Z8-01 12 8202216 8202216 G C FOXJ2 Intron 0.31 TCGA-QK-A8Z8-01 13 33685003 33685003 C T STARD13 Silent p.V883V 0.45 TCGA-QK-A8Z8-01 13 39425150 39425150 G C FREM2 Missense_Mutation p.R2216P 0.39 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 13 41134046 41134046 C A FOXO1 Missense_Mutation p.A528S 0.52 tolerated(1) benign(0) TCGA-QK-A8Z8-01 13 52439979 52439979 C A CCDC70 Silent p.A155A 0.61 TCGA-QK-A8Z8-01 13 67800073 67800073 C G PCDH9 Missense_Mutation p.V834L 0.47 deleterious(0.04) possibly_damaging(0.471) TCGA-QK-A8Z8-01 13 98628962 98628962 C A IPO5 Silent p.A22A 0.46 TCGA-QK-A8Z8-01 14 101526116 101526116 G T MIR154 RNA 0.29 TCGA-QK-A8Z8-01 14 102901536 102901536 C T TECPR2 Silent p.L794L 0.34 TCGA-QK-A8Z8-01 14 104136555 104136555 G T KLC1 Missense_Mutation p.G308C 0.28 deleterious(0) probably_damaging(0.974) TCGA-QK-A8Z8-01 14 104640061 104640061 G T KIF26A Missense_Mutation p.R629L 0.26 deleterious(0) possibly_damaging(0.898) TCGA-QK-A8Z8-01 14 22192375 22192375 T A TRAV3 Silent p.P50P 0.33 TCGA-QK-A8Z8-01 14 22433772 22433772 T A TRAV12-3 Missense_Mutation p.W13R 0.24 deleterious(0) unknown(0) TCGA-QK-A8Z8-01 14 50069115 50069115 A T LRR1 Missense_Mutation p.T71S 0.31 tolerated(0.16) benign(0.18) TCGA-QK-A8Z8-01 14 54944762 54944762 G A GMFB 3'UTR 0.23 TCGA-QK-A8Z8-01 14 60193939 60193939 G T RTN1 Missense_Mutation p.P488H 0.42 deleterious(0) probably_damaging(0.962) TCGA-QK-A8Z8-01 14 69256099 69256099 G A ZFP36L1 3'UTR 0.43 TCGA-QK-A8Z8-01 14 77256962 77256962 T C ANGEL1 Missense_Mutation p.N615S 0.30 tolerated(0.34) benign(0.099) TCGA-QK-A8Z8-01 14 77703003 77703003 C A TMEM63C Missense_Mutation p.F193L 0.28 tolerated(0.49) benign(0.009) TCGA-QK-A8Z8-01 14 92505994 92505994 C A TRIP11 Missense_Mutation p.L12F 0.43 tolerated(0.05) unknown(0) TCGA-QK-A8Z8-01 15 100331893 100331894 - C AC090825.1 5'Flank 0.30 TCGA-QK-A8Z8-01 15 24922856 24922856 G A NPAP1 Silent p.P614P 0.30 TCGA-QK-A8Z8-01 15 25650642 25650642 C A UBE3A Nonsense_Mutation p.E13* 0.36 TCGA-QK-A8Z8-01 15 29393882 29393882 C A APBA2 Silent p.R473R 0.76 TCGA-QK-A8Z8-01 15 40587217 40587217 C T PLCB2 Missense_Mutation p.R609H 0.64 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 15 43940221 43940221 G T CATSPER2 Silent p.P13P 0.63 TCGA-QK-A8Z8-01 15 48527167 48527167 T C SLC12A1 Missense_Mutation p.I394T 0.59 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z8-01 15 48789568 48789568 C A FBN1 Missense_Mutation p.D730Y 0.77 probably_damaging(0.964) TCGA-QK-A8Z8-01 15 48936911 48936911 G A FBN1 Missense_Mutation p.S19F 0.68 benign(0.001) TCGA-QK-A8Z8-01 15 49293071 49293071 T C SECISBP2L Intron 0.62 TCGA-QK-A8Z8-01 15 65489738 65489738 C G CILP Silent p.G962G 0.26 TCGA-QK-A8Z8-01 15 68624335 68624335 G C ITGA11 Silent p.S544S 0.32 TCGA-QK-A8Z8-01 15 69682054 69682054 T G PAQR5 Missense_Mutation p.H149Q 0.34 tolerated(0.05) possibly_damaging(0.529) TCGA-QK-A8Z8-01 15 93173525 93173525 G A FAM174B Missense_Mutation p.P132L 0.60 deleterious(0.03) probably_damaging(0.999) TCGA-QK-A8Z8-01 15 99673315 99673315 C T SYNM 3'UTR 0.76 TCGA-QK-A8Z8-01 16 15225117 15225117 C T RP11-1186N24.5 RNA 0.25 TCGA-QK-A8Z8-01 16 19056269 19056269 A G TMC7 Silent p.T467T 0.38 TCGA-QK-A8Z8-01 16 2049841 2049841 G A ZNF598 Missense_Mutation p.T570M 0.28 benign(0.016) TCGA-QK-A8Z8-01 16 24921784 24921784 C T SLC5A11 Missense_Mutation p.S603F 0.47 tolerated(0.09) benign(0.008) TCGA-QK-A8Z8-01 16 28841988 28841988 G A ATXN2L Missense_Mutation p.G363R 0.16 tolerated(0.05) possibly_damaging(0.707) TCGA-QK-A8Z8-01 16 30123701 30123701 C T GDPD3 Missense_Mutation p.D137N 0.30 deleterious(0.03) possibly_damaging(0.517) TCGA-QK-A8Z8-01 16 30515495 30515495 G A ITGAL Splice_Site p.X716_splice 0.42 TCGA-QK-A8Z8-01 16 32890617 32890617 G T SLC6A10P RNA 0.24 TCGA-QK-A8Z8-01 16 58566252 58566252 A G CNOT1 Silent p.R1981R 0.64 TCGA-QK-A8Z8-01 16 65006894 65006894 G T CDH11 Missense_Mutation p.P435T 0.69 tolerated(0.22) benign(0.004) TCGA-QK-A8Z8-01 16 65022057 65022057 C A CDH11 Intron 0.58 TCGA-QK-A8Z8-01 16 68718695 68718695 A G CDH3 Silent p.A464A 0.72 TCGA-QK-A8Z8-01 16 74376038 74376038 C A RP11-252A24.2 RNA 0.74 TCGA-QK-A8Z8-01 16 89260249 89260249 G T CDH15 Missense_Mutation p.Q693H 0.65 tolerated(0.55) benign(0.004) TCGA-QK-A8Z8-01 16 89347118 89347118 G C ANKRD11 Silent p.T1944T 0.70 TCGA-QK-A8Z8-01 17 10304968 10304968 G T MYH8 Silent p.A941A 0.43 TCGA-QK-A8Z8-01 17 21731641 21731641 C A UBBP4 3'UTR 0.53 TCGA-QK-A8Z8-01 17 21731642 21731642 C A UBBP4 3'UTR 0.53 TCGA-QK-A8Z8-01 17 26209688 26209688 C A LYRM9 Silent p.R11R 0.47 TCGA-QK-A8Z8-01 17 26684727 26684727 G T TMEM199 Missense_Mutation p.V12L 0.41 tolerated_low_confidence(0.33) benign(0.001) TCGA-QK-A8Z8-01 17 26960084 26960084 G A KIAA0100 Silent p.V1227V 0.25 TCGA-QK-A8Z8-01 17 36881840 36881840 G T MLLT6 Nonsense_Mutation p.E1091* 0.38 TCGA-QK-A8Z8-01 17 37071382 37071382 G T LASP1 Missense_Mutation p.A199S 0.29 tolerated(0.54) benign(0.02) TCGA-QK-A8Z8-01 17 40010890 40010890 T A KLHL11 Missense_Mutation p.Y410F 0.28 tolerated(0.13) probably_damaging(0.974) TCGA-QK-A8Z8-01 17 42153198 42153198 A G G6PC3 Silent p.A276A 0.08 TCGA-QK-A8Z8-01 17 47677661 47677661 C T SPOP 3'UTR 0.39 TCGA-QK-A8Z8-01 17 47684716 47684716 C T SPOP Missense_Mutation p.D245N 0.28 deleterious(0.02) probably_damaging(1) TCGA-QK-A8Z8-01 17 5076127 5076127 G A USP6 Missense_Mutation p.D1359N 0.45 tolerated_low_confidence(0.07) possibly_damaging(0.905) TCGA-QK-A8Z8-01 17 61512558 61512558 G A CYB561 Missense_Mutation p.S151F 0.19 tolerated(0.08) possibly_damaging(0.774) TCGA-QK-A8Z8-01 17 61613155 61613155 G A KCNH6 Silent p.A409A 0.18 TCGA-QK-A8Z8-01 17 650823 650823 C A GEMIN4 Missense_Mutation p.A154S 0.52 tolerated(0.5) benign(0) TCGA-QK-A8Z8-01 17 66928653 66928653 G A ABCA8 Silent p.I191I 0.59 TCGA-QK-A8Z8-01 17 74004760 74004760 A T EVPL Missense_Mutation p.L1509H 0.19 deleterious(0) probably_damaging(0.956) TCGA-QK-A8Z8-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.56 deleterious(0) probably_damaging(0.986) TCGA-QK-A8Z8-01 18 18629092 18629092 C A ROCK1 Missense_Mutation p.R125S 0.77 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 18 30093455 30093455 G C WBP11P1 RNA 0.67 TCGA-QK-A8Z8-01 19 14065187 14065187 G C DCAF15 Missense_Mutation p.K56N 0.17 deleterious(0.04) probably_damaging(0.994) TCGA-QK-A8Z8-01 19 15281357 15281357 C G NOTCH3 Silent p.P1633P 0.55 TCGA-QK-A8Z8-01 19 16259679 16259679 C A HSH2D Intron 0.48 TCGA-QK-A8Z8-01 19 22836738 22836738 G A ZNF492 Silent p.K17K 0.34 TCGA-QK-A8Z8-01 19 35631532 35631532 C T FXYD1 Silent p.Y31Y 0.28 TCGA-QK-A8Z8-01 19 36004080 36004080 C A DMKN Missense_Mutation p.G100W 0.24 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 19 38894075 38894075 G T FAM98C Missense_Mutation p.A55S 0.29 tolerated(0.66) possibly_damaging(0.856) TCGA-QK-A8Z8-01 19 40521452 40521452 C A ZNF546 Missense_Mutation p.R759S 0.35 tolerated(1) possibly_damaging(0.683) TCGA-QK-A8Z8-01 19 41223227 41223227 G T ITPKC Nonsense_Mutation p.E63* 0.25 TCGA-QK-A8Z8-01 19 42489324 42489324 C A ATP1A3 Missense_Mutation p.V260L 0.31 tolerated(0.12) benign(0.03) TCGA-QK-A8Z8-01 19 45015211 45015211 C T CEACAM20 Intron 0.45 TCGA-QK-A8Z8-01 19 48248802 48248802 T A GLTSCR2 5'UTR 0.33 TCGA-QK-A8Z8-01 19 48879451 48879451 C A SYNGR4 Missense_Mutation p.S194Y 0.34 deleterious(0.02) possibly_damaging(0.646) TCGA-QK-A8Z8-01 19 48887696 48887696 A G KDELR1 Missense_Mutation p.L132S 0.35 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z8-01 19 49004799 49004799 C A LMTK3 Missense_Mutation p.C301F 0.29 probably_damaging(0.997) TCGA-QK-A8Z8-01 19 49116530 49116530 C G FAM83E Missense_Mutation p.A34P 0.36 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 19 50370336 50370336 C A PNKP Silent p.T42T 0.30 TCGA-QK-A8Z8-01 19 50881478 50881478 A G NR1H2 Missense_Mutation p.E85G 0.28 deleterious(0) probably_damaging(0.997) TCGA-QK-A8Z8-01 19 50912138 50912138 C T POLD1 Silent p.P624P 0.39 TCGA-QK-A8Z8-01 19 51329147 51329147 C A KLK15 Missense_Mutation p.G226C 0.17 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 19 52000204 52000204 G T SIGLEC12 Missense_Mutation p.A510E 0.38 deleterious(0.01) possibly_damaging(0.786) TCGA-QK-A8Z8-01 19 52132981 52149405 19:52132981-52149405 - SIGLEC5 large deletion 0.25 TCGA-QK-A8Z8-01 19 52724235 52724235 A G PPP2R1A Missense_Mutation p.Y456C 0.35 deleterious(0.01) benign(0.036) TCGA-QK-A8Z8-01 19 55098738 55098738 C A LILRA2 Silent p.V459V 0.33 TCGA-QK-A8Z8-01 19 5654186 5654186 A G SAFB Silent p.S547S 0.48 TCGA-QK-A8Z8-01 19 56895481 56895481 G T ZNF582 Nonsense_Mutation p.C435* 0.32 TCGA-QK-A8Z8-01 19 57931275 57931275 A T AC003002.6 Missense_Mutation p.S151C 0.40 tolerated(0.18) possibly_damaging(0.882) TCGA-QK-A8Z8-01 19 58004986 58004986 A G ZNF419 Missense_Mutation p.H355R 0.34 tolerated(0.47) benign(0.412) TCGA-QK-A8Z8-01 19 58189861 58189861 C T ZSCAN4 Missense_Mutation p.T297I 0.29 tolerated(0.1) benign(0.122) TCGA-QK-A8Z8-01 19 58353072 58353072 C A ZNF587B Missense_Mutation p.H344N 0.45 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z8-01 19 58353079 58353079 G T ZNF587B Missense_Mutation p.R346L 0.22 deleterious(0) probably_damaging(0.991) TCGA-QK-A8Z8-01 19 8976318 8976318 G T MUC16 Silent p.T14170T 0.59 TCGA-QK-A8Z8-01 19 8993474 8993474 C A MUC16 Missense_Mutation p.G13872V 0.48 probably_damaging(0.99) TCGA-QK-A8Z8-01 1 103461597 103461597 C - COL11A1 Frame_Shift_Del p.G748Vfs*17 0.36 TCGA-QK-A8Z8-01 1 104114306 104114306 A G AMY2B Missense_Mutation p.I28V 0.43 deleterious(0.03) benign(0.097) TCGA-QK-A8Z8-01 1 111862020 111862020 C T CHIA Silent p.G369G 0.58 TCGA-QK-A8Z8-01 1 113051931 113051931 G T WNT2B Missense_Mutation p.R16L 0.67 tolerated_low_confidence(0.06) benign(0.25) TCGA-QK-A8Z8-01 1 12907671 12907671 T - HNRNPCL1 Frame_Shift_Del p.S158Vfs*18 0.22 TCGA-QK-A8Z8-01 1 1417974 1417974 C T ATAD3B Missense_Mutation p.R244W 0.20 tolerated(0.12) benign(0) TCGA-QK-A8Z8-01 1 146658376 146658376 T C FMO5 3'UTR 0.29 TCGA-QK-A8Z8-01 1 149939440 149939440 C T OTUD7B Missense_Mutation p.R94H 0.21 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z8-01 1 151751214 151751214 T C TDRKH Missense_Mutation p.D277G 0.31 tolerated(0.29) benign(0.001) TCGA-QK-A8Z8-01 1 152278978 152278978 C A FLG Missense_Mutation p.G2795V 0.15 possibly_damaging(0.584) TCGA-QK-A8Z8-01 1 152278979 152278979 C T FLG Missense_Mutation p.G2795R 0.15 possibly_damaging(0.584) TCGA-QK-A8Z8-01 1 155313242 155313242 C G ASH1L Missense_Mutation p.R2719P 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 1 157508906 157508906 G - FCRL5 Frame_Shift_Del p.R458Afs*5 0.18 TCGA-QK-A8Z8-01 1 157514068 157514068 G T FCRL5 Silent p.S276S 0.34 TCGA-QK-A8Z8-01 1 159921407 159921407 G A SLAMF9 3'UTR 0.33 TCGA-QK-A8Z8-01 1 161953981 161953981 G T OLFML2B Silent p.R579R 0.33 TCGA-QK-A8Z8-01 1 165697214 165697214 G T TMCO1 3'UTR 0.46 TCGA-QK-A8Z8-01 1 167515387 167515387 C A CREG1 Missense_Mutation p.G204C 0.21 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 1 171227265 171227265 C G FMO1 Missense_Mutation p.S13R 0.36 deleterious(0) probably_damaging(0.963) TCGA-QK-A8Z8-01 1 171755114 171755114 G T METTL13 Missense_Mutation p.A337S 0.30 tolerated(0.31) benign(0.007) TCGA-QK-A8Z8-01 1 172635275 172635275 G A FASLG 3'UTR 0.31 TCGA-QK-A8Z8-01 1 17322449 17322449 C A ATP13A2 Intron 0.38 TCGA-QK-A8Z8-01 1 176664955 176664955 G A PAPPA2 Silent p.V902V 0.32 TCGA-QK-A8Z8-01 1 176734869 176734869 G C PAPPA2 Missense_Mutation p.V1407L 0.32 tolerated(0.53) benign(0.002) TCGA-QK-A8Z8-01 1 183518986 183518987 - T SMG7 Frame_Shift_Ins p.A975Vfs*12 0.23 TCGA-QK-A8Z8-01 1 185278522 185278522 C A IVNS1ABP Missense_Mutation p.R35L 0.33 tolerated(0.36) benign(0.013) TCGA-QK-A8Z8-01 1 197072043 197072043 A T ASPM Missense_Mutation p.I2113N 0.40 deleterious(0.01) benign(0.25) TCGA-QK-A8Z8-01 1 197390165 197390165 T C CRB1 Missense_Mutation p.S403P 0.30 tolerated(0.19) benign(0.029) TCGA-QK-A8Z8-01 1 197890558 197890558 C G LHX9 Missense_Mutation p.L168V 0.28 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z8-01 1 203819770 203819770 C T ZC3H11A Silent p.S689S 0.43 TCGA-QK-A8Z8-01 1 205031676 205031676 A T CNTN2 Missense_Mutation p.S407C 0.33 deleterious(0) possibly_damaging(0.716) TCGA-QK-A8Z8-01 1 212274331 212274331 G T DTL Missense_Mutation p.A667S 0.33 tolerated(0.23) benign(0.005) TCGA-QK-A8Z8-01 1 214576257 214576257 G A PTPN14 Nonsense_Mutation p.Q184* 0.36 TCGA-QK-A8Z8-01 1 216405295 216405295 C G USH2A Missense_Mutation p.R998T 0.29 benign(0.206) TCGA-QK-A8Z8-01 1 224463094 224463094 C A NVL Missense_Mutation p.V677L 0.34 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 1 238050124 238050124 A G ZP4 Silent p.T262T 0.22 TCGA-QK-A8Z8-01 1 242020758 242020758 G T EXO1 Missense_Mutation p.D173Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 1 243354691 243354691 T A CEP170 Missense_Mutation p.K246I 0.24 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 1 247597412 247597412 C G NLRP3 Missense_Mutation p.R779G 0.40 tolerated(0.21) benign(0.317) TCGA-QK-A8Z8-01 1 247655221 247655221 A G OR2W5 RNA 0.47 TCGA-QK-A8Z8-01 1 247875300 247875300 C T OR6F1 Missense_Mutation p.G253E 0.43 deleterious(0) probably_damaging(0.973) TCGA-QK-A8Z8-01 1 248028102 248028102 G - TRIM58 Frame_Shift_Del p.E205Rfs*25 0.25 TCGA-QK-A8Z8-01 1 28598309 28598309 G C SESN2 Missense_Mutation p.W94S 0.37 deleterious(0.01) probably_damaging(0.945) TCGA-QK-A8Z8-01 1 28815703 28815703 A C PHACTR4 Silent p.T604T 0.18 TCGA-QK-A8Z8-01 1 34164384 34164384 C T CSMD2 Silent p.R1258R 0.34 TCGA-QK-A8Z8-01 1 45974471 45974471 A G MMACHC Missense_Mutation p.I145V 0.24 deleterious(0.03) benign(0.004) TCGA-QK-A8Z8-01 1 6528448 6528448 G T PLEKHG5 Missense_Mutation p.D895E 0.55 deleterious(0) probably_damaging(0.971) TCGA-QK-A8Z8-01 1 6705119 6705119 C A DNAJC11 Missense_Mutation p.R321L 0.30 deleterious(0) benign(0.03) TCGA-QK-A8Z8-01 1 67327892 67327892 C A WDR78 Missense_Mutation p.S345I 0.31 deleterious(0.02) benign(0.379) TCGA-QK-A8Z8-01 1 74671308 74671308 G T FPGT Missense_Mutation p.R526L 0.30 deleterious(0.02) possibly_damaging(0.803) TCGA-QK-A8Z8-01 1 7527898 7527898 C A CAMTA1 Nonsense_Mutation p.Y149* 0.31 TCGA-QK-A8Z8-01 1 75688105 75688105 C T SLC44A5 Missense_Mutation p.M342I 0.28 tolerated(0.24) benign(0.05) TCGA-QK-A8Z8-01 1 84403604 84403604 G A TTLL7 Silent p.S273S 0.48 TCGA-QK-A8Z8-01 1 87104549 87104549 C A RP4-651E10.4 Intron 0.59 TCGA-QK-A8Z8-01 1 89449354 89449354 A T RBMXL1 Silent p.A52A 0.08 TCGA-QK-A8Z8-01 20 10629271 10629271 C A JAG1 Missense_Mutation p.G499W 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-QK-A8Z8-01 20 11903566 11903566 G A BTBD3 Missense_Mutation p.R274H 0.32 deleterious(0.05) benign(0.013) TCGA-QK-A8Z8-01 20 15918146 15918146 C A MACROD2 Silent p.P288P 0.33 TCGA-QK-A8Z8-01 20 16474977 16474977 C T KIF16B Missense_Mutation p.E421K 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-QK-A8Z8-01 20 21494104 21494104 G T NKX2-2 Missense_Mutation p.S68R 0.24 tolerated(0.69) benign(0) TCGA-QK-A8Z8-01 20 23731410 23731410 C T CST1 Missense_Mutation p.G32S 0.29 deleterious(0) possibly_damaging(0.755) TCGA-QK-A8Z8-01 20 29960671 29960671 G T DEFB118 Nonsense_Mutation p.E24* 0.25 TCGA-QK-A8Z8-01 20 30584698 30584698 T A XKR7 Missense_Mutation p.L393Q 0.29 deleterious(0.02) possibly_damaging(0.864) TCGA-QK-A8Z8-01 20 34099403 34099403 G T CEP250 Missense_Mutation p.G2426V 0.33 benign(0.415) TCGA-QK-A8Z8-01 20 36851953 36851953 G - KIAA1755 Frame_Shift_Del p.P752Lfs*11 0.37 TCGA-QK-A8Z8-01 20 37356657 37356657 C A SLC32A1 Missense_Mutation p.T318K 0.28 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z8-01 20 42679949 42679949 C T TOX2 Nonsense_Mutation p.Q139* 0.24 TCGA-QK-A8Z8-01 20 590476 590476 C A TCF15 Missense_Mutation p.D136Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 21 22664458 22664458 G T NCAM2 Missense_Mutation p.Q172H 0.24 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z8-01 21 43299409 43299409 A G PRDM15 Silent p.D24D 0.25 TCGA-QK-A8Z8-01 21 45924738 45924738 A T TSPEAR Missense_Mutation p.V594E 0.34 deleterious(0) possibly_damaging(0.777) TCGA-QK-A8Z8-01 22 16267025 16267025 G T POTEH Missense_Mutation p.T475N 0.09 deleterious(0.03) benign(0.118) TCGA-QK-A8Z8-01 22 16267027 16267027 G T POTEH Silent p.A474A 0.08 TCGA-QK-A8Z8-01 22 19184057 19184057 C - CLTCL1 Frame_Shift_Del p.K1328Nfs*22 0.22 TCGA-QK-A8Z8-01 22 25331445 25331445 C - TMEM211 Frame_Shift_Del p.G82Vfs*3 0.21 TCGA-QK-A8Z8-01 22 26860607 26860607 C T HPS4 Missense_Mutation p.G330D 0.28 tolerated(0.27) benign(0.056) TCGA-QK-A8Z8-01 22 29674145 29674146 - T EWSR1 Frame_Shift_Ins p.G125Wfs*29 0.18 TCGA-QK-A8Z8-01 22 30867939 30867939 C A SEC14L3 Missense_Mutation p.G3C 0.31 deleterious(0) probably_damaging(0.976) TCGA-QK-A8Z8-01 22 32633238 32633238 C T SLC5A4 Missense_Mutation p.M219I 0.28 deleterious(0.01) benign(0.292) TCGA-QK-A8Z8-01 22 37692052 37692052 G A CYTH4 Silent p.Q60Q 0.21 TCGA-QK-A8Z8-01 22 49042466 49042466 C T FAM19A5 Missense_Mutation p.P57L 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-QK-A8Z8-01 2 111789238 111789238 G - ACOXL Frame_Shift_Del p.W439* 0.26 TCGA-QK-A8Z8-01 2 113082627 113082627 A T ZC3H6 Missense_Mutation p.S647C 0.39 deleterious(0.02) possibly_damaging(0.789) TCGA-QK-A8Z8-01 2 135602814 135602814 C G ACMSD Nonsense_Mutation p.Y23* 0.22 TCGA-QK-A8Z8-01 2 138724756 138724756 G C HNMT Intron 0.45 TCGA-QK-A8Z8-01 2 1480884 1480884 G A TPO Silent p.A282A 0.44 TCGA-QK-A8Z8-01 2 149270568 149270568 G T MBD5 3'UTR 0.45 TCGA-QK-A8Z8-01 2 155099299 155099299 A T GALNT13 Silent p.I189I 0.33 TCGA-QK-A8Z8-01 2 162903977 162903977 G A DPP4 Silent p.Y43Y 0.38 TCGA-QK-A8Z8-01 2 171573656 171573656 G T SP5 Silent p.L313L 0.27 TCGA-QK-A8Z8-01 2 178681604 178681604 C T PDE11A Missense_Mutation p.M563I 0.28 tolerated(0.05) possibly_damaging(0.577) TCGA-QK-A8Z8-01 2 179315021 179315021 T A PRKRA Silent p.I61I 0.32 TCGA-QK-A8Z8-01 2 179402257 179402257 G T TTN Missense_Mutation p.P33226H 0.34 TCGA-QK-A8Z8-01 2 179436520 179436520 C A TTN Missense_Mutation p.R24780L 0.35 TCGA-QK-A8Z8-01 2 179447180 179447180 G T TTN Silent p.P22001P 0.34 TCGA-QK-A8Z8-01 2 182322446 182322446 T C ITGA4 Missense_Mutation p.L22P 0.22 deleterious(0) possibly_damaging(0.701) TCGA-QK-A8Z8-01 2 182363456 182363456 G A ITGA4 Silent p.Q549Q 0.38 TCGA-QK-A8Z8-01 2 185802541 185802541 C A ZNF804A Nonsense_Mutation p.C806* 0.41 TCGA-QK-A8Z8-01 2 197708609 197708609 C A PGAP1 Intron 0.31 TCGA-QK-A8Z8-01 2 198318281 198318281 T A COQ10B 5'UTR 0.29 TCGA-QK-A8Z8-01 2 207988812 207988812 G A KLF7 Missense_Mutation p.S140L 0.34 tolerated(0.24) probably_damaging(0.943) TCGA-QK-A8Z8-01 2 21242604 21242604 C G APOB Missense_Mutation p.G997A 0.45 probably_damaging(0.999) TCGA-QK-A8Z8-01 2 212568853 212568853 G A ERBB4 Missense_Mutation p.T422I 0.36 tolerated(0.9) benign(0.05) TCGA-QK-A8Z8-01 2 219486264 219486264 G T PLCD4 Missense_Mutation p.R161L 0.29 tolerated(0.1) possibly_damaging(0.844) TCGA-QK-A8Z8-01 2 232320299 232320299 G A NCL Silent p.A623A 0.32 TCGA-QK-A8Z8-01 2 233246339 233246339 C T ALPP Missense_Mutation p.A481V 0.36 deleterious(0) probably_damaging(0.994) TCGA-QK-A8Z8-01 2 233675972 233675972 T C GIGYF2 Silent p.V660V 0.25 TCGA-QK-A8Z8-01 2 234526584 234526584 C T UGT1A8 Silent p.Y77Y 0.37 TCGA-QK-A8Z8-01 2 27716862 27716862 C A FNDC4 Missense_Mutation p.G130V 0.29 deleterious(0) possibly_damaging(0.825) TCGA-QK-A8Z8-01 2 43457982 43457982 G A THADA 3'Flank 0.55 TCGA-QK-A8Z8-01 2 51254756 51254756 G T NRXN1 Missense_Mutation p.A219E 0.31 tolerated(0.99) benign(0.003) TCGA-QK-A8Z8-01 2 71061009 71061009 C T CD207 Missense_Mutation p.M111I 0.21 tolerated(0.3) benign(0.001) TCGA-QK-A8Z8-01 2 75276738 75276738 A C TACR1 Missense_Mutation p.Y349D 0.32 deleterious(0.04) possibly_damaging(0.521) TCGA-QK-A8Z8-01 2 77745550 77745550 T A LRRTM4 Missense_Mutation p.Q482L 0.35 deleterious(0) probably_damaging(0.989) TCGA-QK-A8Z8-01 2 79349974 79349974 G T REG1A Missense_Mutation p.R110L 0.27 tolerated(0.08) benign(0.002) TCGA-QK-A8Z8-01 2 80101281 80101281 C T CTNNA2 Missense_Mutation p.T222M 0.37 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z8-01 2 80782995 80782995 C G CTNNA2 Missense_Mutation p.A573G 0.28 tolerated(0.06) benign(0.115) TCGA-QK-A8Z8-01 2 89339969 89339969 C A IGKV1-12 Missense_Mutation p.A35S 0.37 deleterious(0.01) possibly_damaging(0.462) TCGA-QK-A8Z8-01 2 90229360 90229360 G T IGKV1D-42 Missense_Mutation p.Q60H 0.29 deleterious(0.03) probably_damaging(0.966) TCGA-QK-A8Z8-01 2 99256616 99256616 A T MGAT4A Missense_Mutation p.S366T 0.25 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z8-01 3 100992575 100992575 T A IMPG2 Missense_Mutation p.E226D 0.29 tolerated(0.09) possibly_damaging(0.505) TCGA-QK-A8Z8-01 3 101540442 101540442 A G NXPE3 Missense_Mutation p.I442V 0.23 tolerated(0.07) benign(0.143) TCGA-QK-A8Z8-01 3 111718280 111718280 G - TAGLN3 Frame_Shift_Del p.G5Afs*6 0.34 TCGA-QK-A8Z8-01 3 119101206 119101206 G T ARHGAP31 Missense_Mutation p.A167S 0.15 tolerated(0.18) probably_damaging(1) TCGA-QK-A8Z8-01 3 119217567 119217567 G A TIMMDC1 5'UTR 0.27 TCGA-QK-A8Z8-01 3 122646772 122646772 C T SEMA5B Missense_Mutation p.A293T 0.24 deleterious(0.05) possibly_damaging(0.686) TCGA-QK-A8Z8-01 3 126260799 126260799 C G CHST13 Missense_Mutation p.P135R 0.27 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 3 126261419 126261419 T A CHST13 Nonstop_Mutation p.*342Kext*222 0.11 TCGA-QK-A8Z8-01 3 128758718 128758718 C T EFCC1 3'UTR 0.34 TCGA-QK-A8Z8-01 3 130313165 130313165 C A COL6A6 Missense_Mutation p.A1504E 0.47 tolerated(1) benign(0.015) TCGA-QK-A8Z8-01 3 133560157 133560157 C A RAB6B Silent p.T87T 0.46 TCGA-QK-A8Z8-01 3 138739295 138739295 C G PRR23B Missense_Mutation p.R70P 0.40 deleterious(0.02) possibly_damaging(0.715) TCGA-QK-A8Z8-01 3 142840322 142840322 G A CHST2 Missense_Mutation p.A222T 0.33 deleterious(0) benign(0.387) TCGA-QK-A8Z8-01 3 147128358 147128358 C T ZIC1 Silent p.H153H 0.20 TCGA-QK-A8Z8-01 3 147130366 147130366 C A ZIC1 Missense_Mutation p.D348E 0.24 deleterious(0.02) possibly_damaging(0.886) TCGA-QK-A8Z8-01 3 154861327 154861327 G - MME Frame_Shift_Del p.E429Kfs*15 0.20 TCGA-QK-A8Z8-01 3 158384398 158384398 A G LXN 3'UTR 0.41 TCGA-QK-A8Z8-01 3 164727128 164727128 C T SI Nonsense_Mutation p.W1373* 0.29 TCGA-QK-A8Z8-01 3 174814852 174814852 T A NAALADL2 Missense_Mutation p.Y106N 0.21 deleterious(0) possibly_damaging(0.878) TCGA-QK-A8Z8-01 3 186793575 186793575 G A ST6GAL1 Missense_Mutation p.R402Q 0.23 benign(0.024) TCGA-QK-A8Z8-01 3 186917551 186917551 G A RTP1 Missense_Mutation p.R162H 0.32 deleterious(0.03) probably_damaging(0.913) TCGA-QK-A8Z8-01 3 197670845 197670845 G A IQCG Missense_Mutation p.P29L 0.28 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-QK-A8Z8-01 3 38888292 38888293 - T SCN11A Frame_Shift_Ins p.G1757Rfs*2 0.32 TCGA-QK-A8Z8-01 3 38888675 38888675 A T SCN11A Missense_Mutation p.V1629E 0.54 deleterious(0) possibly_damaging(0.762) TCGA-QK-A8Z8-01 3 49158710 49158710 G A LAMB2 Silent p.S1782S 0.07 TCGA-QK-A8Z8-01 3 49395430 49395430 C A GPX1 Intron 0.30 TCGA-QK-A8Z8-01 3 95374293 95374293 G T MTHFD2P1 RNA 0.28 TCGA-QK-A8Z8-01 3 97806221 97806221 G T OR5AC2 Missense_Mutation p.A69S 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-QK-A8Z8-01 3 97868761 97868761 T G OR5H14 Missense_Mutation p.Y178D 0.50 deleterious(0) probably_damaging(0.987) TCGA-QK-A8Z8-01 4 114280093 114280093 C G ANK2 Missense_Mutation p.S3440C 0.30 probably_damaging(1) TCGA-QK-A8Z8-01 4 126239735 126239735 T G FAT4 Silent p.T723T 0.32 TCGA-QK-A8Z8-01 4 146064571 146064571 T A OTUD4 Silent p.T478T 0.39 TCGA-QK-A8Z8-01 4 149115939 149115939 A C NR3C2 Missense_Mutation p.C658G 0.34 deleterious(0) possibly_damaging(0.537) TCGA-QK-A8Z8-01 4 155237080 155237080 C T DCHS2 Missense_Mutation p.V1239I 0.35 tolerated(0.38) benign(0.038) TCGA-QK-A8Z8-01 4 165961346 165961346 G A TRIM60 Missense_Mutation p.S41N 0.31 tolerated(0.49) benign(0.009) TCGA-QK-A8Z8-01 4 169299609 169299609 G A DDX60L Nonsense_Mutation p.Q1461* 0.33 TCGA-QK-A8Z8-01 4 177190254 177190254 C A ASB5 Silent p.S2S 0.42 TCGA-QK-A8Z8-01 4 185018518 185018518 G T ENPP6 Silent p.R333R 0.44 TCGA-QK-A8Z8-01 4 186288198 186288198 C T LRP2BP 3'UTR 0.55 TCGA-QK-A8Z8-01 4 187521515 187521515 C A FAT1 Splice_Site p.X3881_splice 0.53 TCGA-QK-A8Z8-01 4 37848585 37848585 G - PGM2 Frame_Shift_Del p.A349Pfs*41 0.25 TCGA-QK-A8Z8-01 4 38907400 38907400 G T FAM114A1 Missense_Mutation p.G192V 0.34 tolerated(0.13) benign(0.063) TCGA-QK-A8Z8-01 4 41992714 41992714 T G SLC30A9 Missense_Mutation p.S16A 0.36 tolerated_low_confidence(0.87) benign(0) TCGA-QK-A8Z8-01 4 42072566 42072566 G - SLC30A9 Frame_Shift_Del p.G426Vfs*9 0.26 TCGA-QK-A8Z8-01 4 44450084 44450084 G C KCTD8 Missense_Mutation p.Q153E 0.30 tolerated(0.18) benign(0.006) TCGA-QK-A8Z8-01 4 46125926 46125926 C A GABRG1 Missense_Mutation p.G2V 0.22 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-QK-A8Z8-01 4 55602953 55602953 G T KIT Missense_Mutation p.R888L 0.30 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 4 55979531 55979531 T C KDR Missense_Mutation p.T306A 0.33 tolerated(0.13) benign(0.089) TCGA-QK-A8Z8-01 4 66361144 66361144 A G EPHA5 Missense_Mutation p.F343S 0.55 tolerated(0.09) benign(0.203) TCGA-QK-A8Z8-01 4 70146605 70146605 T C UGT2B28 Silent p.D129D 0.32 TCGA-QK-A8Z8-01 4 72629207 72629207 T A GC Nonsense_Mutation p.K226* 0.41 TCGA-QK-A8Z8-01 4 85724475 85724475 G C WDFY3 Missense_Mutation p.L859V 0.30 deleterious(0.03) benign(0.066) TCGA-QK-A8Z8-01 5 102888111 102888111 G T NUDT12 Missense_Mutation p.T362K 0.29 deleterious(0) probably_damaging(0.924) TCGA-QK-A8Z8-01 5 11082866 11082866 G T CTNND2 Nonsense_Mutation p.C910* 0.26 TCGA-QK-A8Z8-01 5 127597489 127597489 T C FBN2 Missense_Mutation p.N2768S 0.30 deleterious(0) possibly_damaging(0.718) TCGA-QK-A8Z8-01 5 130762861 130762861 C T CTC-432M15.3 3'UTR 0.38 TCGA-QK-A8Z8-01 5 131819709 131819709 G C IRF1 Silent p.T304T 0.26 TCGA-QK-A8Z8-01 5 137781192 137781192 A G REEP2 Missense_Mutation p.N199D 0.31 tolerated(0.76) benign(0) TCGA-QK-A8Z8-01 5 13830263 13830263 C A DNAH5 Missense_Mutation p.V2041F 0.28 possibly_damaging(0.727) TCGA-QK-A8Z8-01 5 13900315 13900315 C A DNAH5 Missense_Mutation p.K753N 0.31 possibly_damaging(0.728) TCGA-QK-A8Z8-01 5 140237982 140237982 C - PCDHA10 Frame_Shift_Del p.D783Efs*28 0.38 TCGA-QK-A8Z8-01 5 140794191 140794191 G T PCDHGA10 Silent p.P483P 0.31 TCGA-QK-A8Z8-01 5 145393619 145393619 G C SH3RF2 Missense_Mutation p.G352R 0.36 tolerated(0.54) possibly_damaging(0.643) TCGA-QK-A8Z8-01 5 146070764 146070764 T A PPP2R2B Missense_Mutation p.K128M 0.43 deleterious(0.05) benign(0.118) TCGA-QK-A8Z8-01 5 147820769 147820769 C T FBXO38 Silent p.F1044F 0.39 TCGA-QK-A8Z8-01 5 149927843 149927843 G C NDST1 Missense_Mutation p.G737R 0.33 tolerated(0.09) benign(0.134) TCGA-QK-A8Z8-01 5 149927844 149927844 G T NDST1 Missense_Mutation p.G737V 0.32 deleterious(0.02) possibly_damaging(0.612) TCGA-QK-A8Z8-01 5 156566212 156566212 T C MED7 Silent p.E77E 0.30 TCGA-QK-A8Z8-01 5 159776050 159776050 G C C1QTNF2 3'UTR 0.52 TCGA-QK-A8Z8-01 5 17354524 17354524 G A CTD-2139B15.2 RNA 0.32 TCGA-QK-A8Z8-01 5 176295145 176295145 G T UNC5A Nonsense_Mutation p.E103* 0.31 TCGA-QK-A8Z8-01 5 176700778 176700779 AT - NSD1 Frame_Shift_Del p.I1873Kfs*18 0.45 TCGA-QK-A8Z8-01 5 42695191 42695191 G T GHR Missense_Mutation p.V147L 0.28 deleterious(0) probably_damaging(0.979) TCGA-QK-A8Z8-01 5 72419619 72419619 G A TMEM171 Nonsense_Mutation p.W140* 0.38 TCGA-QK-A8Z8-01 5 74064769 74064769 A C NSA2 Missense_Mutation p.Y6S 0.33 deleterious(0.01) benign(0.159) TCGA-QK-A8Z8-01 5 74325454 74325454 A T GCNT4 Missense_Mutation p.L137M 0.30 tolerated(1) possibly_damaging(0.812) TCGA-QK-A8Z8-01 5 74638523 74638523 G A HMGCR Missense_Mutation p.M31I 0.28 tolerated(0.32) benign(0.004) TCGA-QK-A8Z8-01 5 79031424 79031424 A C CMYA5 Missense_Mutation p.K2279T 0.28 benign(0.05) TCGA-QK-A8Z8-01 5 82815734 82815734 A T VCAN Missense_Mutation p.S537C 0.20 deleterious(0) possibly_damaging(0.906) TCGA-QK-A8Z8-01 5 82816584 82816584 C A VCAN Missense_Mutation p.P820H 0.26 tolerated(0.77) benign(0.001) TCGA-QK-A8Z8-01 5 83402601 83402601 G T EDIL3 Missense_Mutation p.Q173K 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-QK-A8Z8-01 5 86686641 86686641 A G RASA1 Missense_Mutation p.I1029V 0.33 tolerated(1) benign(0) TCGA-QK-A8Z8-01 5 86690840 86690840 C T CCNH Intron 0.43 TCGA-QK-A8Z8-01 5 9630099 9630099 G A TAS2R1 Nonsense_Mutation p.Q16* 0.25 TCGA-QK-A8Z8-01 5 98128960 98128960 G C RGMB Missense_Mutation p.A314P 0.35 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 6 100368687 100368687 C A MCHR2 3'UTR 0.23 TCGA-QK-A8Z8-01 6 10931680 10931680 A T SYCP2L Silent p.P547P 0.28 TCGA-QK-A8Z8-01 6 110714093 110714093 T C DDO Missense_Mutation p.Y332C 0.30 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 6 112392689 112392689 G T TUBE1 Missense_Mutation p.Q452K 0.33 tolerated(0.45) benign(0.002) TCGA-QK-A8Z8-01 6 125112511 125112511 T C NKAIN2 Silent p.Y167Y 0.26 TCGA-QK-A8Z8-01 6 130762678 130762678 C G TMEM200A Missense_Mutation p.Q371E 0.30 tolerated(0.56) benign(0.002) TCGA-QK-A8Z8-01 6 146480485 146480485 G T GRM1 Silent p.G234G 0.26 TCGA-QK-A8Z8-01 6 152529292 152529292 C T SYNE1 Missense_Mutation p.V7547M 0.29 probably_damaging(0.998) TCGA-QK-A8Z8-01 6 154414491 154414491 C G OPRM1 Intron 0.31 TCGA-QK-A8Z8-01 6 162206837 162206837 C T PARK2 Missense_Mutation p.D280N 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-QK-A8Z8-01 6 24467009 24467009 C A GPLD1 Silent p.V240V 0.30 TCGA-QK-A8Z8-01 6 25652512 25652512 C A SCGN 5'UTR 0.47 TCGA-QK-A8Z8-01 6 26502016 26502016 G T BTN1A1 Missense_Mutation p.G93V 0.39 deleterious(0) probably_damaging(0.991) TCGA-QK-A8Z8-01 6 27834798 27834798 C A HIST1H1B Silent p.V170V 0.31 TCGA-QK-A8Z8-01 6 30954218 30954218 C G MUC21 Missense_Mutation p.T89R 0.27 deleterious_low_confidence(0) unknown(0) TCGA-QK-A8Z8-01 6 32017975 32017975 C A TNXB 5'Flank 0.33 TCGA-QK-A8Z8-01 6 33766918 33766918 C T MLN Silent p.A66A 0.31 TCGA-QK-A8Z8-01 6 38939426 38939426 G T DNAH8 Missense_Mutation p.Q3953H 0.30 benign(0.065) TCGA-QK-A8Z8-01 6 39869801 39869801 G T DAAM2 Silent p.R1065R 0.17 TCGA-QK-A8Z8-01 6 43306452 43306471 GGCTTTCCTTATCCTGGTTA - ZNF318 Frame_Shift_Del p.N1756Rfs*4 0.21 TCGA-QK-A8Z8-01 6 44394340 44394340 C G CDC5L Missense_Mutation p.P591R 0.34 deleterious(0) probably_damaging(0.992) TCGA-QK-A8Z8-01 6 51907870 51907870 A G PKHD1 Silent p.L962L 0.40 TCGA-QK-A8Z8-01 6 63989835 63989835 G A LGSN 3'UTR 0.26 TCGA-QK-A8Z8-01 6 7576593 7576593 C A DSP Nonsense_Mutation p.C899* 0.32 TCGA-QK-A8Z8-01 6 90438741 90438741 C A MDN1 Missense_Mutation p.G1753V 0.32 probably_damaging(1) TCGA-QK-A8Z8-01 7 104800965 104800965 T C SRPK2 Missense_Mutation p.I204V 0.34 deleterious(0.01) probably_damaging(0.953) TCGA-QK-A8Z8-01 7 108524212 108524212 G A C7orf66 Missense_Mutation p.S67L 0.28 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-QK-A8Z8-01 7 128355704 128355704 T A FAM71F1 Missense_Mutation p.L70Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 7 128488974 128488974 C T FLNC Missense_Mutation p.P1622L 0.31 deleterious(0.01) probably_damaging(1) TCGA-QK-A8Z8-01 7 128490862 128490862 G T FLNC Missense_Mutation p.V1802L 0.42 deleterious(0) possibly_damaging(0.477) TCGA-QK-A8Z8-01 7 130038593 130038593 G A CEP41 3'UTR 0.38 TCGA-QK-A8Z8-01 7 139790850 139790850 T C KDM7A 3'UTR 0.35 TCGA-QK-A8Z8-01 7 141423765 141423765 T C WEE2 Missense_Mutation p.M351T 0.26 tolerated(0.36) benign(0.002) TCGA-QK-A8Z8-01 7 142032484 142032484 C A TRBV7-1 Missense_Mutation p.Q102K 0.23 tolerated(0.13) benign(0.006) TCGA-QK-A8Z8-01 7 142499645 142499645 G T TRBC2 Nonsense_Mutation p.E136* 0.31 TCGA-QK-A8Z8-01 7 142627469 142627469 G C TRPV5 Missense_Mutation p.D67E 0.20 tolerated(0.34) benign(0.013) TCGA-QK-A8Z8-01 7 142723368 142723368 G A OR9A2 Silent p.F284F 0.29 TCGA-QK-A8Z8-01 7 144150555 144150555 C A TPK1 3'UTR 0.31 TCGA-QK-A8Z8-01 7 150163813 150163813 C T GIMAP8 Silent p.S9S 0.32 TCGA-QK-A8Z8-01 7 154143352 154143352 A G DPP6 Silent p.A99A 0.33 TCGA-QK-A8Z8-01 7 3991474 3991474 G A SDK1 Missense_Mutation p.G358R 0.52 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 7 44151776 44151776 G T AEBP1 Missense_Mutation p.W691C 0.48 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z8-01 7 44841026 44841026 G A PPIA 3'UTR 0.27 TCGA-QK-A8Z8-01 7 45222991 45222991 C T RAMP3 Missense_Mutation p.R143C 0.57 deleterious(0) probably_damaging(0.984) TCGA-QK-A8Z8-01 7 50022996 50022996 G C ZPBP Silent p.R301R 0.04 TCGA-QK-A8Z8-01 7 50367257 50367257 G T IKZF1 Missense_Mutation p.D22Y 0.86 deleterious(0) probably_damaging(0.988) TCGA-QK-A8Z8-01 7 54614664 54614664 C A VSTM2A Missense_Mutation p.P91T 0.04 tolerated(0.32) possibly_damaging(0.832) TCGA-QK-A8Z8-01 7 57194308 57194308 C A ZNF479 Missense_Mutation p.V53F 0.11 deleterious(0.03) benign(0.157) TCGA-QK-A8Z8-01 7 64452411 64452411 T A ERV3-1 Missense_Mutation p.S332C 0.36 deleterious(0.03) possibly_damaging(0.722) TCGA-QK-A8Z8-01 7 72413800 72413800 G T POM121 Missense_Mutation p.G825C 0.36 deleterious(0) possibly_damaging(0.726) TCGA-QK-A8Z8-01 7 84628850 84628850 C A SEMA3D Missense_Mutation p.G747V 0.26 tolerated(0.28) benign(0.108) TCGA-QK-A8Z8-01 7 86998753 86998753 T C CROT Silent p.F231F 0.31 TCGA-QK-A8Z8-01 7 94293017 94293017 C A PEG10 Missense_Mutation p.P50H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.707) TCGA-QK-A8Z8-01 7 94540265 94540265 A G PPP1R9A Silent p.P280P 0.34 TCGA-QK-A8Z8-01 8 101276908 101276908 C T RNF19A Missense_Mutation p.V433M 0.24 tolerated(0.08) possibly_damaging(0.486) TCGA-QK-A8Z8-01 8 104337544 104337544 G T FZD6 Missense_Mutation p.G404C 0.36 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 8 10756082 10756082 C A XKR6 Missense_Mutation p.G436W 0.51 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 8 109462140 109462140 A G EMC2 Silent p.E43E 0.34 TCGA-QK-A8Z8-01 8 110477334 110477334 C A PKHD1L1 Missense_Mutation p.S2758Y 0.31 deleterious(0) probably_damaging(0.964) TCGA-QK-A8Z8-01 8 113266529 113266529 G T CSMD3 Missense_Mutation p.P3355T 0.33 deleterious(0) probably_damaging(0.934) TCGA-QK-A8Z8-01 8 113347703 113347703 C G CSMD3 Missense_Mutation p.W2340C 0.28 deleterious(0) benign(0.345) TCGA-QK-A8Z8-01 8 125115551 125115551 G C FER1L6 Splice_Site p.X1763_splice 0.26 TCGA-QK-A8Z8-01 8 131172131 131172131 T A ASAP1 Missense_Mutation p.Y330F 0.25 tolerated(0.74) benign(0.001) TCGA-QK-A8Z8-01 8 133935670 133935670 G T TG Missense_Mutation p.G1539V 0.29 deleterious(0.01) possibly_damaging(0.86) TCGA-QK-A8Z8-01 8 134025991 134025991 C A TG Missense_Mutation p.H2182N 0.18 tolerated(0.13) benign(0.072) TCGA-QK-A8Z8-01 8 139155283 139155283 A G FAM135B Silent p.L1204L 0.29 TCGA-QK-A8Z8-01 8 3265578 3265578 G A CSMD1 Silent p.L638L 0.35 TCGA-QK-A8Z8-01 8 36675183 36675183 T A KCNU1 Nonsense_Mutation p.C337* 0.52 TCGA-QK-A8Z8-01 8 39521390 39521391 - T ADAM18 Frame_Shift_Ins p.C437Lfs*6 0.21 TCGA-QK-A8Z8-01 8 52284441 52284441 C A PXDNL Missense_Mutation p.C1298F 0.29 deleterious(0) probably_damaging(0.985) TCGA-QK-A8Z8-01 8 52384784 52384784 C G PXDNL Missense_Mutation p.G259R 0.35 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 8 61761091 61761091 G A CHD7 Missense_Mutation p.R1743H 0.34 probably_damaging(0.974) TCGA-QK-A8Z8-01 8 65528245 65528245 T C CYP7B1 Intron 0.41 TCGA-QK-A8Z8-01 8 68140271 68140271 G A ARFGEF1 Missense_Mutation p.S1173L 0.24 deleterious(0) probably_damaging(0.96) TCGA-QK-A8Z8-01 8 72156891 72156891 C G EYA1 Missense_Mutation p.E363Q 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-QK-A8Z8-01 8 77617405 77617405 G T ZFHX4 Missense_Mutation p.R361L 0.32 benign(0.433) TCGA-QK-A8Z8-01 8 93029673 93029673 A T RUNX1T1 Intron 0.44 TCGA-QK-A8Z8-01 8 97892202 97892202 C T CPQ Missense_Mutation p.A273V 0.29 tolerated(0.09) possibly_damaging(0.677) TCGA-QK-A8Z8-01 9 107332101 107332101 A G OR13C8 Missense_Mutation p.Y218C 0.47 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 9 111625197 111625197 G A ACTL7A Missense_Mutation p.A199T 0.60 tolerated(0.09) probably_damaging(0.999) TCGA-QK-A8Z8-01 9 113312290 113312290 G T SVEP1 Missense_Mutation p.A209E 0.56 probably_damaging(0.988) TCGA-QK-A8Z8-01 9 125281774 125281774 G C OR1J4 Missense_Mutation p.A119P 0.53 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-QK-A8Z8-01 9 139402413 139402413 G - NOTCH1 Frame_Shift_Del p.C1169Afs*10 0.33 TCGA-QK-A8Z8-01 9 139874648 139874648 C A PTGDS Silent p.T154T 0.57 TCGA-QK-A8Z8-01 9 140953170 140953170 G A CACNA1B Silent p.V1486V 0.41 TCGA-QK-A8Z8-01 9 15971674 15971674 G T CCDC171 Missense_Mutation p.G1274V 0.40 tolerated_low_confidence(0.53) benign(0.002) TCGA-QK-A8Z8-01 9 71395383 71395383 G A FAM122A Silent p.T101T 0.50 TCGA-QK-A8Z8-01 9 90499929 90499929 C A SPATA31E1 Missense_Mutation p.P176Q 0.58 deleterious(0) probably_damaging(0.978) TCGA-QK-A8Z8-01 9 90503164 90503164 G A SPATA31E1 Silent p.K1254K 0.53 TCGA-QK-A8Z8-01 X 103294763 103294763 G T H2BFM Missense_Mutation p.G74C 0.45 deleterious(0) possibly_damaging(0.824) TCGA-QK-A8Z8-01 X 103349901 103349901 G T SLC25A53 Missense_Mutation p.H14N 0.26 tolerated(0.07) benign(0.006) TCGA-QK-A8Z8-01 X 103498900 103498900 C A ESX1 Silent p.T147T 0.30 TCGA-QK-A8Z8-01 X 111078166 111078166 A G TRPC5 Missense_Mutation p.S627P 0.26 deleterious(0) probably_damaging(0.987) TCGA-QK-A8Z8-01 X 113965829 113965829 C T HTR2C Silent p.N54N 0.36 TCGA-QK-A8Z8-01 X 117880934 117880934 T A IL13RA1 Silent p.T82T 0.24 TCGA-QK-A8Z8-01 X 118771044 118771044 C G SEPT6 Missense_Mutation p.C301S 0.26 tolerated(0.9) probably_damaging(0.997) TCGA-QK-A8Z8-01 X 118920615 118920615 A G RPL39 3'UTR 0.18 TCGA-QK-A8Z8-01 X 119575685 119575685 G T LAMP2 Nonsense_Mutation p.C331* 0.26 TCGA-QK-A8Z8-01 X 119669722 119669722 G C CUL4B Missense_Mutation p.T726S 0.22 tolerated(1) benign(0.006) TCGA-QK-A8Z8-01 X 123019940 123019940 C A XIAP Missense_Mutation p.T143N 0.30 deleterious(0) possibly_damaging(0.87) TCGA-QK-A8Z8-01 X 132548993 132548993 T C GPC4 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0.02) benign(0.067) TCGA-QK-A8Z8-01 X 133700553 133700553 C A PLAC1 Nonsense_Mutation p.E54* 0.28 TCGA-QK-A8Z8-01 X 13774855 13774855 G C OFD1 Missense_Mutation p.E460D 0.38 tolerated(0.25) benign(0.129) TCGA-QK-A8Z8-01 X 138679741 138679741 G T MCF2 Missense_Mutation p.L721I 0.34 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 X 140993225 140993225 C A MAGEC1 Missense_Mutation p.P12Q 0.33 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-QK-A8Z8-01 X 140993651 140993651 C A MAGEC1 Missense_Mutation p.P154H 0.34 deleterious_low_confidence(0) benign(0.002) TCGA-QK-A8Z8-01 X 140993692 140993692 A T MAGEC1 Missense_Mutation p.S168C 0.22 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-QK-A8Z8-01 X 148797311 148797311 C A MAGEA11 Silent p.T80T 0.40 TCGA-QK-A8Z8-01 X 151138711 151138711 T A GABRE Missense_Mutation p.I74F 0.42 deleterious(0) probably_damaging(0.992) TCGA-QK-A8Z8-01 X 152710874 152710874 G T TREX2 Silent p.P5P 0.43 TCGA-QK-A8Z8-01 X 153178914 153178914 C A ARHGAP4 Missense_Mutation p.Q465H 0.41 tolerated(0.06) probably_damaging(0.971) TCGA-QK-A8Z8-01 X 153496164 153496164 C A OPN1MW2 Missense_Mutation p.P298T 0.27 tolerated(0.35) benign(0.008) TCGA-QK-A8Z8-01 X 153581217 153581217 G A FLNA Missense_Mutation p.T2101M 0.33 deleterious(0) probably_damaging(0.969) TCGA-QK-A8Z8-01 X 153693822 153693822 G T PLXNA3 Missense_Mutation p.W767L 0.40 deleterious(0.01) possibly_damaging(0.894) TCGA-QK-A8Z8-01 X 15593813 15593813 C A ACE2 Missense_Mutation p.W473L 0.22 deleterious(0.03) possibly_damaging(0.85) TCGA-QK-A8Z8-01 X 16142026 16142026 G T GRPR 5'UTR 0.23 TCGA-QK-A8Z8-01 X 1720350 1720350 A T AKAP17A Missense_Mutation p.S651C 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-QK-A8Z8-01 X 17743618 17743618 C G NHS Missense_Mutation p.I443M 0.26 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 X 18956846 18956846 C A PHKA2 Missense_Mutation p.D314Y 0.20 deleterious(0) possibly_damaging(0.701) TCGA-QK-A8Z8-01 X 21674328 21674328 C A KLHL34 Missense_Mutation p.A527S 0.59 tolerated(0.4) benign(0.012) TCGA-QK-A8Z8-01 X 26212570 26212570 G A MAGEB6 Missense_Mutation p.A203T 0.46 deleterious(0.01) benign(0.007) TCGA-QK-A8Z8-01 X 27840035 27840035 G C MAGEB10 Silent p.L204L 0.34 TCGA-QK-A8Z8-01 X 299616 299616 T C PPP2R3B Missense_Mutation p.Q456R 0.33 tolerated(1) benign(0) TCGA-QK-A8Z8-01 X 30873140 30873140 T C TAB3 Silent p.Q214Q 0.21 TCGA-QK-A8Z8-01 X 31200941 31200941 G A DMD Silent p.P3296P 0.19 TCGA-QK-A8Z8-01 X 32328252 32328252 C A DMD Missense_Mutation p.D2022Y 0.37 benign(0.18) TCGA-QK-A8Z8-01 X 32472928 32472928 A T DMD Missense_Mutation p.L1152M 0.19 probably_damaging(0.994) TCGA-QK-A8Z8-01 X 32834631 32834631 T A DMD Missense_Mutation p.S162C 0.26 probably_damaging(0.969) TCGA-QK-A8Z8-01 X 37026510 37026510 G C FAM47C Silent p.R9R 0.16 TCGA-QK-A8Z8-01 X 37027083 37027083 G T FAM47C Silent p.P200P 0.18 TCGA-QK-A8Z8-01 X 37027084 37027084 G T FAM47C Nonsense_Mutation p.E201* 0.17 TCGA-QK-A8Z8-01 X 37526718 37526718 C A LANCL3 Missense_Mutation p.S360Y 0.36 tolerated(0.11) benign(0.423) TCGA-QK-A8Z8-01 X 44088978 44088978 T C EFHC2 Silent p.E556E 0.26 TCGA-QK-A8Z8-01 X 47426094 47426094 C - ARAF Frame_Shift_Del p.L207Yfs*85 0.32 TCGA-QK-A8Z8-01 X 47918112 47918112 A G ZNF630 Silent p.C573C 0.21 TCGA-QK-A8Z8-01 X 49040166 49040166 G C PRICKLE3 Intron 0.19 TCGA-QK-A8Z8-01 X 50377317 50377317 C A SHROOM4 Nonsense_Mutation p.E586* 0.19 TCGA-QK-A8Z8-01 X 51075942 51075942 C A NUDT10 Missense_Mutation p.P42Q 0.26 deleterious(0.04) possibly_damaging(0.853) TCGA-QK-A8Z8-01 X 51150091 51150091 G A CXorf67 Missense_Mutation p.A75T 0.34 tolerated(0.18) possibly_damaging(0.715) TCGA-QK-A8Z8-01 X 53115363 53115363 G A TSPYL2 Missense_Mutation p.D597N 0.20 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-QK-A8Z8-01 X 54321016 54321016 T A WNK3 Nonsense_Mutation p.K555* 0.16 TCGA-QK-A8Z8-01 X 54328282 54328282 G C WNK3 Missense_Mutation p.P367R 0.33 deleterious(0) probably_damaging(1) TCGA-QK-A8Z8-01 X 54566675 54566675 G T GNL3L Missense_Mutation p.W63C 0.15 deleterious(0) benign(0.267) TCGA-QK-A8Z8-01 X 54578402 54578402 G T GNL3L Missense_Mutation p.W392C 0.36 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 X 57618883 57618883 G T ZXDB Silent p.A134A 0.31 TCGA-QK-A8Z8-01 X 69671762 69671762 T G DLG3 Missense_Mutation p.L344R 0.44 deleterious(0.02) benign(0.027) TCGA-QK-A8Z8-01 X 70362095 70362095 T C MED12 3'UTR 0.27 TCGA-QK-A8Z8-01 X 70367585 70367585 C T NLGN3 5'UTR 0.24 TCGA-QK-A8Z8-01 X 70387194 70387194 G A NLGN3 Missense_Mutation p.G416E 0.30 tolerated(0.15) benign(0.232) TCGA-QK-A8Z8-01 X 73063403 73063403 T A XIST RNA 0.28 TCGA-QK-A8Z8-01 X 77912561 77912561 G T ZCCHC5 Missense_Mutation p.H453N 0.30 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z8-01 X 80457681 80457681 C G SH3BGRL 5'UTR 0.16 TCGA-QK-A8Z8-01 X 86772938 86772938 C A KLHL4 Silent p.I14I 0.30 TCGA-QK-A8Z8-01 X 89177261 89177261 C A TGIF2LX Silent p.A59A 0.28 TCGA-QK-A8Z8-01 X 92928043 92928043 C G NAP1L3 Silent p.A87A 0.14 TCGA-QK-A8Z9-01 10 103921897 103921897 A G NOLC1 Silent p.R657R 0.20 TCGA-QK-A8Z9-01 10 111667465 111667465 G A XPNPEP1 Missense_Mutation p.S77L 0.21 deleterious(0) probably_damaging(0.989) TCGA-QK-A8Z9-01 10 116606427 116606427 A G FAM160B1 Missense_Mutation p.Y503C 0.20 tolerated(0.18) benign(0.002) TCGA-QK-A8Z9-01 10 118354364 118354364 C A PNLIPRP1 Silent p.L151L 0.24 TCGA-QK-A8Z9-01 10 17169924 17169924 C G CUBN Splice_Site p.X85_splice 0.07 TCGA-QK-A8Z9-01 10 25313350 25313350 A G THNSL1 Missense_Mutation p.R400G 0.36 tolerated(0.31) possibly_damaging(0.872) TCGA-QK-A8Z9-01 10 35299242 35299242 C T CUL2 Silent p.A764A 0.10 TCGA-QK-A8Z9-01 10 79163724 79163724 C T KCNMA1 Missense_Mutation p.D146N 0.14 tolerated(0.45) benign(0.005) TCGA-QK-A8Z9-01 10 85984841 85984841 C T LRIT2 Missense_Mutation p.G47E 0.12 tolerated(0.54) benign(0.01) TCGA-QK-A8Z9-01 10 95429552 95429552 C T FRA10AC1 3'UTR 0.19 TCGA-QK-A8Z9-01 10 99148069 99148069 C T RRP12 Silent p.P319P 0.14 TCGA-QK-A8Z9-01 11 111956006 111956006 C T TIMM8B 3'UTR 0.22 TCGA-QK-A8Z9-01 11 113085207 113085207 A G NCAM1 Missense_Mutation p.T404A 0.46 tolerated(0.3) benign(0.089) TCGA-QK-A8Z9-01 11 130785621 130785621 C T SNX19 Missense_Mutation p.V72M 0.31 tolerated(0.09) benign(0.258) TCGA-QK-A8Z9-01 11 40137573 40137573 G C LRRC4C Missense_Mutation p.I90M 0.10 tolerated(0.24) benign(0.003) TCGA-QK-A8Z9-01 11 56258603 56258603 C A OR5M8 Nonsense_Mutation p.E82* 0.15 TCGA-QK-A8Z9-01 11 62285071 62285071 G A AHNAK Silent p.L5606L 0.34 TCGA-QK-A8Z9-01 11 65270407 65270407 A G MALAT1 RNA 0.56 TCGA-QK-A8Z9-01 11 66063113 66063113 G A TMEM151A Missense_Mutation p.G466S 0.41 tolerated_low_confidence(0.32) benign(0.005) TCGA-QK-A8Z9-01 11 71169582 71169582 C G NADSYN1 Missense_Mutation p.D85E 0.08 deleterious(0) probably_damaging(1) TCGA-QK-A8Z9-01 11 96092212 96092212 T A CCDC82 Missense_Mutation p.K504I 0.09 deleterious(0) probably_damaging(0.994) TCGA-QK-A8Z9-01 12 100550594 100550594 G C AC010203.1 3'Flank 0.32 TCGA-QK-A8Z9-01 12 110370840 110370840 G T GIT2 Missense_Mutation p.D741E 0.16 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z9-01 12 123265746 123265746 C T CCDC62 Missense_Mutation p.L89F 0.08 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z9-01 12 44166765 44166765 G A IRAK4 Missense_Mutation p.D181N 0.12 tolerated(0.25) benign(0.125) TCGA-QK-A8Z9-01 12 50041554 50041554 C T FMNL3 Missense_Mutation p.E904K 0.28 deleterious(0) probably_damaging(0.98) TCGA-QK-A8Z9-01 12 53555162 53555162 C T CSAD Silent p.P265P 0.08 TCGA-QK-A8Z9-01 12 7288484 7288484 A G CLSTN3 Missense_Mutation p.K226R 0.24 tolerated(0.08) benign(0.219) TCGA-QK-A8Z9-01 12 80749709 80749709 C T OTOGL Silent p.C1920C 0.26 TCGA-QK-A8Z9-01 13 25883402 25883402 A T NUPL1 Missense_Mutation p.T90S 0.40 tolerated(0.64) benign(0.01) TCGA-QK-A8Z9-01 13 37569650 37569650 T C ALG5 Silent p.K50K 0.38 TCGA-QK-A8Z9-01 14 105071043 105071043 G A TMEM179 Silent p.A12A 0.36 TCGA-QK-A8Z9-01 14 19563522 19563522 G C POTEG Missense_Mutation p.V346L 0.05 tolerated(0.12) benign(0.2) TCGA-QK-A8Z9-01 14 22356168 22356168 G C TRAV12-2 Silent p.V9V 0.24 TCGA-QK-A8Z9-01 14 22600915 22600915 G A TRAV8-7 Missense_Mutation p.S87N 0.20 tolerated(0.31) benign(0.018) TCGA-QK-A8Z9-01 14 37153953 37153953 C A SLC25A21 Nonsense_Mutation p.E261* 0.23 TCGA-QK-A8Z9-01 14 70989921 70989921 A G ADAM20 Silent p.I568I 0.22 TCGA-QK-A8Z9-01 14 78205121 78205121 C G SNW1 Missense_Mutation p.R178P 0.14 deleterious(0) benign(0.383) TCGA-QK-A8Z9-01 15 101569183 101569183 C T LRRK1 Silent p.T903T 0.20 TCGA-QK-A8Z9-01 15 41313173 41313173 G A INO80 Nonsense_Mutation p.Q1067* 0.22 TCGA-QK-A8Z9-01 15 44892690 44892690 T C SPG11 Missense_Mutation p.I1221V 0.17 tolerated(0.47) benign(0.002) TCGA-QK-A8Z9-01 15 63881009 63881009 C T USP3 Silent p.L442L 0.26 TCGA-QK-A8Z9-01 15 67664575 67664575 G C IQCH Missense_Mutation p.A294P 0.09 tolerated(0.08) possibly_damaging(0.576) TCGA-QK-A8Z9-01 15 74883702 74883702 C T ARID3B Silent p.I364I 0.18 TCGA-QK-A8Z9-01 15 77906970 77906970 G A LINGO1 Missense_Mutation p.R427W 0.11 tolerated(0.05) possibly_damaging(0.831) TCGA-QK-A8Z9-01 16 18882711 18882711 T C SMG1 Silent p.K759K 0.25 TCGA-QK-A8Z9-01 16 19027866 19027866 C T TMC7 Nonsense_Mutation p.R136* 0.15 TCGA-QK-A8Z9-01 16 3071909 3071909 G T TNFRSF12A 3'UTR 0.28 TCGA-QK-A8Z9-01 16 30793334 30793334 T - ZNF629 Frame_Shift_Del p.D772Vfs*65 0.26 TCGA-QK-A8Z9-01 16 31404690 31404690 C T ITGAD Silent p.F3F 0.17 TCGA-QK-A8Z9-01 17 10415858 10415858 G A MYH1 Silent p.A338A 0.07 TCGA-QK-A8Z9-01 17 2323209 2323209 C T METTL16 3'UTR 0.42 TCGA-QK-A8Z9-01 17 33586247 33586247 C T SLFN5 Missense_Mutation p.R180W 0.33 deleterious(0.01) possibly_damaging(0.613) TCGA-QK-A8Z9-01 17 36352487 36352487 C G RP11-1407O15.2 Missense_Mutation p.D434H 0.07 TCGA-QK-A8Z9-01 17 38510721 38510721 G C RARA Missense_Mutation p.E325D 0.28 deleterious(0) benign(0.294) TCGA-QK-A8Z9-01 17 57076572 57076572 G C TRIM37 3'UTR 0.25 TCGA-QK-A8Z9-01 17 681930 681930 C T GLOD4 Intron 0.24 TCGA-QK-A8Z9-01 17 7577534 7577534 C G TP53 Missense_Mutation p.R249S 0.54 deleterious(0) probably_damaging(0.994) TCGA-QK-A8Z9-01 17 76120647 76120647 G A TMC6 Silent p.G283G 0.24 TCGA-QK-A8Z9-01 17 78321853 78321853 C T RNF213 Missense_Mutation p.R3240W 0.26 possibly_damaging(0.849) TCGA-QK-A8Z9-01 17 80790264 80790264 A G ZNF750 Missense_Mutation p.F23L 0.24 deleterious(0) probably_damaging(0.994) TCGA-QK-A8Z9-01 19 10935874 10935874 A G DNM2 Missense_Mutation p.I679V 0.07 tolerated(0.17) benign(0.158) TCGA-QK-A8Z9-01 19 23836269 23836269 A C ZNF675 Missense_Mutation p.F489C 0.27 deleterious(0.01) probably_damaging(0.949) TCGA-QK-A8Z9-01 19 2476207 2476207 G A GADD45B 5'UTR 0.23 TCGA-QK-A8Z9-01 19 2476208 2476208 C T GADD45B 5'UTR 0.22 TCGA-QK-A8Z9-01 19 34718361 34718361 C A LSM14A 3'UTR 0.27 TCGA-QK-A8Z9-01 19 35251387 35251387 G A ZNF599 Missense_Mutation p.L107F 0.17 tolerated(0.26) benign(0.015) TCGA-QK-A8Z9-01 19 42754049 42754049 C A ERF Silent p.R101R 0.24 TCGA-QK-A8Z9-01 19 43358420 43358420 C T PSG10P RNA 0.23 TCGA-QK-A8Z9-01 19 49001562 49001562 G A LMTK3 Missense_Mutation p.P951S 0.36 unknown(0) TCGA-QK-A8Z9-01 19 50666045 50666045 C T IZUMO2 Silent p.A86A 0.15 TCGA-QK-A8Z9-01 19 53911046 53911046 C G ZNF765 Missense_Mutation p.H80D 0.20 deleterious(0.03) possibly_damaging(0.835) TCGA-QK-A8Z9-01 19 57932879 57932879 G C ZNF17 3'UTR 0.17 TCGA-QK-A8Z9-01 19 7807999 7807999 C T CD209 Missense_Mutation p.A381T 0.28 tolerated(0.09) benign(0.035) TCGA-QK-A8Z9-01 19 9046542 9046542 T C MUC16 Missense_Mutation p.T11697A 0.16 benign(0.022) TCGA-QK-A8Z9-01 1 145650515 145650515 A G RNF115 Missense_Mutation p.N65S 0.35 tolerated(0.29) benign(0.001) TCGA-QK-A8Z9-01 1 151105571 151105571 C T SEMA6C Missense_Mutation p.A760T 0.23 deleterious(0.02) possibly_damaging(0.695) TCGA-QK-A8Z9-01 1 15420822 15420822 G A KAZN Missense_Mutation p.V457M 0.10 deleterious(0) probably_damaging(0.939) TCGA-QK-A8Z9-01 1 154221753 154221753 A G UBAP2L Silent p.E351E 0.18 TCGA-QK-A8Z9-01 1 160460471 160460471 A G SLAMF6 Silent p.V217V 0.09 TCGA-QK-A8Z9-01 1 160850392 160850392 G C ITLN1 Nonsense_Mutation p.S224* 0.35 TCGA-QK-A8Z9-01 1 169824959 169824959 G A SCYL3 Silent p.Y484Y 0.15 TCGA-QK-A8Z9-01 1 196436881 196436881 T A KCNT2 Silent p.P165P 0.19 TCGA-QK-A8Z9-01 1 233514966 233514966 C T MLK4 Silent p.D738D 0.23 TCGA-QK-A8Z9-01 1 236399533 236399533 G A ERO1LB Intron 0.26 TCGA-QK-A8Z9-01 1 240070964 240070964 C T CHRM3 Silent p.I71I 0.24 TCGA-QK-A8Z9-01 1 241797858 241797858 T A CHML Missense_Mutation p.H404L 0.31 deleterious(0.01) probably_damaging(0.924) TCGA-QK-A8Z9-01 1 55457641 55457641 C T TMEM61 Silent p.L166L 0.09 TCGA-QK-A8Z9-01 1 77987628 77987628 G T AK5 Missense_Mutation p.R476S 0.34 deleterious(0.02) benign(0.031) TCGA-QK-A8Z9-01 20 39791907 39791907 T C PLCG1 Missense_Mutation p.Y261H 0.23 tolerated(0.05) possibly_damaging(0.652) TCGA-QK-A8Z9-01 20 398389 398389 A G RBCK1 Missense_Mutation p.Y92C 0.22 deleterious(0) probably_damaging(0.968) TCGA-QK-A8Z9-01 20 57415489 57415489 G C RP4-806M20.3 5'Flank 0.07 TCGA-QK-A8Z9-01 20 9457384 9457384 A T PLCB4 Silent p.A1160A 0.11 TCGA-QK-A8Z9-01 21 15746392 15746392 G C HSPA13 Missense_Mutation p.P321R 0.46 tolerated(0.09) benign(0.139) TCGA-QK-A8Z9-01 22 50754160 50754160 G A DENND6B Silent p.H247H 0.29 TCGA-QK-A8Z9-01 2 109380846 109380846 G A RANBP2 Missense_Mutation p.R1284K 0.12 tolerated(0.53) benign(0.23) TCGA-QK-A8Z9-01 2 1440030 1440030 T C TPO Missense_Mutation p.L119S 0.13 deleterious(0.02) benign(0.391) TCGA-QK-A8Z9-01 2 168100081 168100081 G T XIRP2 Nonsense_Mutation p.G727* 0.24 TCGA-QK-A8Z9-01 2 179443337 179443337 C A TTN Splice_Site p.X22777_splice 0.28 TCGA-QK-A8Z9-01 2 187703778 187703778 C T ZSWIM2 Silent p.G134G 0.20 TCGA-QK-A8Z9-01 2 204066426 204066426 A G NBEAL1 Missense_Mutation p.I2438V 0.25 tolerated(0.43) benign(0.116) TCGA-QK-A8Z9-01 2 219515169 219515169 C T ZNF142 Missense_Mutation p.E121K 0.25 deleterious(0.01) benign(0.292) TCGA-QK-A8Z9-01 2 225342986 225342986 C G CUL3 Missense_Mutation p.E702D 0.27 deleterious(0.02) probably_damaging(0.981) TCGA-QK-A8Z9-01 2 228883981 228883981 G C SPHKAP Missense_Mutation p.P530R 0.13 tolerated(0.52) benign(0.002) TCGA-QK-A8Z9-01 2 27669129 27669130 - GGCA IFT172 Frame_Shift_Ins p.K1585Cfs*8 0.09 TCGA-QK-A8Z9-01 2 74597797 74597797 G A DCTN1 Silent p.D333D 0.15 TCGA-QK-A8Z9-01 2 74659633 74659633 C T RTKN Missense_Mutation p.R91Q 0.11 deleterious(0.01) possibly_damaging(0.85) TCGA-QK-A8Z9-01 2 76975981 76975981 C A LRRTM4 Missense_Mutation p.C538F 0.22 deleterious_low_confidence(0.04) probably_damaging(0.979) TCGA-QK-A8Z9-01 3 112184878 112184878 T A BTLA 3'UTR 0.28 TCGA-QK-A8Z9-01 3 112989708 112989708 A T BOC Missense_Mutation p.E195V 0.27 tolerated(0.09) possibly_damaging(0.885) TCGA-QK-A8Z9-01 3 121200481 121200497 GACTCCACAGATGCTCT - POLQ Frame_Shift_Del p.R2045Hfs*25 0.16 TCGA-QK-A8Z9-01 3 128525319 128525319 A C RAB7A Silent p.T95T 0.25 TCGA-QK-A8Z9-01 3 132441254 132441254 G T NPHP3 5'UTR 0.47 TCGA-QK-A8Z9-01 3 171969269 171969269 G A FNDC3B Missense_Mutation p.G243E 0.18 tolerated(0.18) benign(0.365) TCGA-QK-A8Z9-01 3 183671041 183671041 C T ABCC5 Missense_Mutation p.E834K 0.13 deleterious(0) possibly_damaging(0.888) TCGA-QK-A8Z9-01 3 193220321 193220321 C T ATP13A4 Silent p.E114E 0.26 TCGA-QK-A8Z9-01 3 52256957 52256957 C T TLR9 Missense_Mutation p.D613N 0.27 tolerated(0.35) benign(0.008) TCGA-QK-A8Z9-01 3 9991857 9991857 C T PRRT3 Splice_Site 0.62 TCGA-QK-A8Z9-01 4 13339892 13339892 G A HSP90AB2P RNA 0.15 TCGA-QK-A8Z9-01 4 140811264 140811264 C T MAML3 Silent p.P442P 0.10 TCGA-QK-A8Z9-01 4 154478124 154478124 C G KIAA0922 Missense_Mutation p.P147A 0.38 deleterious(0.02) probably_damaging(1) TCGA-QK-A8Z9-01 4 156135461 156135461 C G NPY2R Missense_Mutation p.H124D 0.13 deleterious(0.01) probably_damaging(0.972) TCGA-QK-A8Z9-01 4 159627474 159627474 C G ETFDH Missense_Mutation p.I473M 0.14 tolerated(0.1) benign(0.01) TCGA-QK-A8Z9-01 4 159627834 159627834 C G ETFDH Missense_Mutation p.P508A 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-QK-A8Z9-01 4 174298571 174298571 G C SAP30 3'UTR 0.14 TCGA-QK-A8Z9-01 4 24801406 24801406 C T SOD3 Missense_Mutation p.A88V 0.20 tolerated(0.42) benign(0.01) TCGA-QK-A8Z9-01 4 38775082 38775082 G A TLR10 Silent p.F710F 0.08 TCGA-QK-A8Z9-01 4 44176962 44176962 T C KCTD8 Missense_Mutation p.T423A 0.32 tolerated(0.6) benign(0.057) TCGA-QK-A8Z9-01 4 52765532 52765532 T C DCUN1D4 Silent p.F201F 0.07 TCGA-QK-A8Z9-01 4 57176857 57176857 G C KIAA1211 Missense_Mutation p.S104T 0.08 tolerated(0.36) probably_damaging(0.988) TCGA-QK-A8Z9-01 4 81187962 81187962 C T FGF5 5'UTR 0.07 TCGA-QK-A8Z9-01 5 15936735 15936735 C T FBXL7 Missense_Mutation p.R306C 0.42 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z9-01 5 171520497 171520497 G A STK10 Silent p.C491C 0.36 TCGA-QK-A8Z9-01 5 33684143 33684143 G A ADAMTS12 Nonsense_Mutation p.Q218* 0.10 TCGA-QK-A8Z9-01 5 45462091 45462091 C G HCN1 Missense_Mutation p.D290H 0.29 deleterious(0) probably_damaging(0.996) TCGA-QK-A8Z9-01 5 50685525 50685525 A T ISL1 Missense_Mutation p.H175L 0.39 deleterious(0.02) benign(0.272) TCGA-QK-A8Z9-01 5 76758924 76758924 A G WDR41 Missense_Mutation p.V115A 0.41 deleterious(0) possibly_damaging(0.688) TCGA-QK-A8Z9-01 5 79032587 79032587 C T CMYA5 Missense_Mutation p.P2667S 0.08 benign(0.031) TCGA-QK-A8Z9-01 5 87564628 87564628 C A TMEM161B 5'UTR 0.33 TCGA-QK-A8Z9-01 6 117150019 117150019 T C GPRC6A Missense_Mutation p.D53G 0.26 tolerated(0.07) benign(0.001) TCGA-QK-A8Z9-01 6 127517165 127517165 G C RSPO3 3'UTR 0.24 TCGA-QK-A8Z9-01 6 152469240 152469240 C T SYNE1 Missense_Mutation p.E8306K 0.18 benign(0.437) TCGA-QK-A8Z9-01 6 159654521 159654521 C A FNDC1 Missense_Mutation p.P993T 0.22 deleterious_low_confidence(0) unknown(0) TCGA-QK-A8Z9-01 6 3123964 3123964 C T BPHL Missense_Mutation p.H61Y 0.24 deleterious(0) benign(0.233) TCGA-QK-A8Z9-01 6 33255224 33255225 - A WDR46 Frame_Shift_Ins p.D263* 0.25 TCGA-QK-A8Z9-01 6 34511953 34511953 G A SPDEF Missense_Mutation p.P94S 0.20 tolerated(0.05) possibly_damaging(0.562) TCGA-QK-A8Z9-01 6 35088707 35088707 C T TCP11 Missense_Mutation p.E245K 0.14 tolerated(0.09) possibly_damaging(0.609) TCGA-QK-A8Z9-01 6 3737363 3737363 T C PXDC1 Missense_Mutation p.D139G 0.28 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-QK-A8Z9-01 6 56989595 56989595 C T ZNF451 Missense_Mutation p.R84C 0.27 deleterious(0) probably_damaging(0.998) TCGA-QK-A8Z9-01 6 90276732 90276732 C T ANKRD6 Missense_Mutation p.R13C 0.32 deleterious(0) probably_damaging(0.993) TCGA-QK-A8Z9-01 7 126086333 126086333 T A GRM8 Missense_Mutation p.I842F 0.15 deleterious(0) benign(0.131) TCGA-QK-A8Z9-01 7 138482852 138482852 G A TMEM213 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.02) benign(0.043) TCGA-QK-A8Z9-01 7 154684570 154684570 C A DPP6 3'UTR 0.14 TCGA-QK-A8Z9-01 7 37890269 37890269 G A NME8 Missense_Mutation p.A44T 0.32 deleterious(0) probably_damaging(0.999) TCGA-QK-A8Z9-01 7 57188272 57188272 G C ZNF479 Missense_Mutation p.L284V 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-QK-A8Z9-01 7 72397439 72397439 G A POM121 Silent p.E55E 0.16 TCGA-QK-A8Z9-01 7 73530278 73530278 G A LIMK1 Silent p.E519E 0.30 TCGA-QK-A8Z9-01 7 87792473 87792473 G T ADAM22 Missense_Mutation p.G685V 0.15 deleterious(0.01) benign(0.331) TCGA-QK-A8Z9-01 7 97821155 97821155 G T LMTK2 Nonsense_Mutation p.E460* 0.19 TCGA-QK-A8Z9-01 7 99381783 99381783 G T CYP3A4 5'UTR 0.21 TCGA-QK-A8Z9-01 8 125498726 125498726 A G RNF139 Missense_Mutation p.N279S 0.14 tolerated(0.61) benign(0.006) TCGA-QK-A8Z9-01 8 139207536 139207536 C T FAM135B Missense_Mutation p.E280K 0.13 deleterious(0) possibly_damaging(0.889) TCGA-QK-A8Z9-01 8 144995673 144995673 G A PLEC Silent p.R2909R 0.26 TCGA-QK-A8Z9-01 8 63939806 63939806 T A GGH Silent p.G98G 0.23 TCGA-QK-A8Z9-01 8 66637009 66637009 T C PDE7A Intron 0.19 TCGA-QK-A8Z9-01 8 86041489 86041489 A T LRRCC1 Nonsense_Mutation p.K501* 0.13 TCGA-QK-A8Z9-01 9 121930221 121930221 C T BRINP1 Missense_Mutation p.S476N 0.13 tolerated(0.18) possibly_damaging(0.827) TCGA-QK-A8Z9-01 9 88967696 88967696 T C ZCCHC6 Missense_Mutation p.Y140C 0.40 tolerated_low_confidence(0.08) possibly_damaging(0.765) TCGA-QK-A8Z9-01 X 101817596 101817596 C T NXF4 RNA 0.30 TCGA-QK-A8ZA-01 10 102048764 102048764 G T PKD2L1 Missense_Mutation p.P767Q 0.57 deleterious_low_confidence(0) benign(0.276) TCGA-QK-A8ZA-01 10 121429550 121429550 G A BAG3 Missense_Mutation p.R123Q 0.11 tolerated(0.09) benign(0.061) TCGA-QK-A8ZA-01 10 12870861 12870861 C T CAMK1D Missense_Mutation p.T378M 0.64 deleterious_low_confidence(0.02) possibly_damaging(0.541) TCGA-QK-A8ZA-01 10 131761636 131761636 C A EBF3 Nonsense_Mutation p.E96* 0.29 TCGA-QK-A8ZA-01 11 11454266 11454266 G A GALNT18 Missense_Mutation p.A166V 0.73 deleterious(0) probably_damaging(0.965) TCGA-QK-A8ZA-01 11 118376471 118376471 C T KMT2A Silent p.I3288I 0.47 TCGA-QK-A8ZA-01 11 55761712 55761712 C A OR5F1 Silent p.L130L 0.31 TCGA-QK-A8ZA-01 11 55890130 55890130 C T OR8H3 Silent p.F94F 0.14 TCGA-QK-A8ZA-01 11 57185237 57185237 G T SLC43A3 Missense_Mutation p.P219T 0.31 tolerated(0.06) benign(0.071) TCGA-QK-A8ZA-01 11 62490338 62490338 T C HNRNPUL2 Missense_Mutation p.E310G 0.43 deleterious(0.01) benign(0.237) TCGA-QK-A8ZA-01 11 64497248 64497248 C A RASGRP2 Missense_Mutation p.G526V 0.39 deleterious(0) probably_damaging(0.992) TCGA-QK-A8ZA-01 11 66322664 66322664 C T CTD-3074O7.2 3'Flank 0.29 TCGA-QK-A8ZA-01 11 6942440 6942440 C T OR2D3 Missense_Mutation p.R70C 0.58 deleterious(0.01) benign(0.008) TCGA-QK-A8ZA-01 11 73950277 73950277 G C PPME1 Missense_Mutation p.K270N 0.09 tolerated(0.38) benign(0.004) TCGA-QK-A8ZA-01 11 77336807 77336807 C T CLNS1A Missense_Mutation p.E107K 0.06 tolerated(0.11) possibly_damaging(0.474) TCGA-QK-A8ZA-01 12 129822360 129822360 G A TMEM132D Missense_Mutation p.A373V 0.44 tolerated(0.65) benign(0.001) TCGA-QK-A8ZA-01 12 2113555 2113555 C G DCP1B Missense_Mutation p.D15H 0.33 deleterious(0) probably_damaging(0.999) TCGA-QK-A8ZA-01 12 51863567 51863567 C T SLC4A8 Missense_Mutation p.R507C 0.45 tolerated(0.08) benign(0.019) TCGA-QK-A8ZA-01 12 6443336 6443336 C T TNFRSF1A Silent p.E38E 0.46 TCGA-QK-A8ZA-01 12 69656301 69656301 C T CPSF6 Nonsense_Mutation p.R540* 0.28 TCGA-QK-A8ZA-01 13 27259959 27259959 G A WASF3 Missense_Mutation p.D496N 0.45 deleterious(0) unknown(0) TCGA-QK-A8ZA-01 13 42393503 42393503 G A VWA8 Missense_Mutation p.P574S 0.48 tolerated(0.06) possibly_damaging(0.58) TCGA-QK-A8ZA-01 13 49281765 49281765 T C CYSLTR2 Missense_Mutation p.L271S 0.37 deleterious(0) probably_damaging(1) TCGA-QK-A8ZA-01 14 102891533 102891533 G A TECPR2 Missense_Mutation p.E286K 0.30 deleterious(0.01) benign(0.362) TCGA-QK-A8ZA-01 14 28734098 28734098 C G BNIP3P1 RNA 0.55 TCGA-QK-A8ZA-01 14 81658906 81658906 T A GTF2A1 Missense_Mutation p.E297V 0.22 deleterious(0) possibly_damaging(0.465) TCGA-QK-A8ZA-01 15 25488649 25488649 C A SNORD115-40 5'Flank 0.27 TCGA-QK-A8ZA-01 15 53908088 53908088 A C WDR72 Missense_Mutation p.M772R 0.41 tolerated(0.63) benign(0.006) TCGA-QK-A8ZA-01 15 84683407 84683407 G A ADAMTSL3 Missense_Mutation p.G1363R 0.45 deleterious(0) probably_damaging(1) TCGA-QK-A8ZA-01 15 91491023 91491023 C G UNC45A Intron 0.50 TCGA-QK-A8ZA-01 16 20337725 20337725 C A GP2 Missense_Mutation p.G10V 0.11 tolerated_low_confidence(0.06) benign(0.034) TCGA-QK-A8ZA-01 16 2140462 2140462 G A PKD1 Missense_Mutation p.L4090F 0.22 benign(0.349) TCGA-QK-A8ZA-01 16 57111704 57111704 G A NLRC5 Missense_Mutation p.E1665K 0.60 deleterious(0.02) possibly_damaging(0.838) TCGA-QK-A8ZA-01 16 66839718 66839718 C G NAE1 Missense_Mutation p.G486A 0.23 deleterious(0) probably_damaging(0.98) TCGA-QK-A8ZA-01 17 17722357 17722357 G A SREBF1 Silent p.L376L 0.30 TCGA-QK-A8ZA-01 17 33849530 33849530 G C SLFN12L 5'UTR 0.56 TCGA-QK-A8ZA-01 17 39240653 39240653 T C KRTAP4-7 Silent p.C65C 0.40 TCGA-QK-A8ZA-01 17 39535858 39535858 A C KRT34 Missense_Mutation p.I280M 0.29 deleterious(0.01) benign(0.012) TCGA-QK-A8ZA-01 17 46799774 46799774 G T PRAC1 5'UTR 0.31 TCGA-QK-A8ZA-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.69 deleterious(0) probably_damaging(1) TCGA-QK-A8ZA-01 17 79954550 79954550 G T ASPSCR1 Missense_Mutation p.G254V 0.73 deleterious(0.03) unknown(0) TCGA-QK-A8ZA-01 18 66367685 66367685 G A TMX3 Nonsense_Mutation p.R117* 0.63 TCGA-QK-A8ZA-01 19 10434205 10434205 G A RAVER1 Missense_Mutation p.A282V 0.41 deleterious(0) possibly_damaging(0.522) TCGA-QK-A8ZA-01 19 14829049 14829049 C T ZNF333 Nonsense_Mutation p.Q304* 0.31 TCGA-QK-A8ZA-01 19 37309378 37309378 T A ZNF790 Missense_Mutation p.E623V 0.44 deleterious(0) possibly_damaging(0.72) TCGA-QK-A8ZA-01 19 47127071 47127071 G T PTGIR Missense_Mutation p.L138M 0.38 tolerated(0.07) benign(0.411) TCGA-QK-A8ZA-01 19 50339143 50339143 C T MED25 Missense_Mutation p.R636W 0.18 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-QK-A8ZA-01 19 52091225 52091225 C A ZNF175 Missense_Mutation p.S547R 0.46 tolerated(0.09) benign(0.011) TCGA-QK-A8ZA-01 19 59063292 59063292 G T CHMP2A Missense_Mutation p.S174R 0.40 deleterious(0.02) benign(0.222) TCGA-QK-A8ZA-01 1 100330084 100330084 G A AGL Silent p.V201V 0.30 TCGA-QK-A8ZA-01 1 104113017 104113017 C A AMY2B Intron 0.09 TCGA-QK-A8ZA-01 1 111147389 111147389 C T KCNA2 Missense_Mutation p.G6R 0.13 deleterious_low_confidence(0.05) benign(0.26) TCGA-QK-A8ZA-01 1 118527381 118527381 A G SPAG17 Silent p.N1898N 0.33 TCGA-QK-A8ZA-01 1 118624083 118624083 G C SPAG17 Missense_Mutation p.Q649E 0.23 tolerated(0.58) benign(0.234) TCGA-QK-A8ZA-01 1 12017907 12017907 G C PLOD1 Missense_Mutation p.L250F 0.17 tolerated(0.07) benign(0.049) TCGA-QK-A8ZA-01 1 1226052 1226052 G A SCNN1D Missense_Mutation p.R632K 0.45 tolerated(0.26) benign(0.006) TCGA-QK-A8ZA-01 1 151491044 151491044 G A CGN Missense_Mutation p.G17R 0.09 deleterious(0) probably_damaging(1) TCGA-QK-A8ZA-01 1 155447732 155447732 C A ASH1L Silent p.R1643R 0.52 TCGA-QK-A8ZA-01 1 156883853 156883853 G A PEAR1 Missense_Mutation p.D975N 0.29 tolerated(0.28) possibly_damaging(0.663) TCGA-QK-A8ZA-01 1 159505522 159505522 G T OR10J5 Silent p.I92I 0.21 TCGA-QK-A8ZA-01 1 160340976 160340976 C A NHLH1 3'UTR 0.22 TCGA-QK-A8ZA-01 1 19166592 19166592 C T TAS1R2 Missense_Mutation p.R674H 0.20 tolerated(0.07) possibly_damaging(0.769) TCGA-QK-A8ZA-01 1 205801816 205801816 C T PM20D1 Missense_Mutation p.V399I 0.27 tolerated(1) benign(0.006) TCGA-QK-A8ZA-01 1 216251612 216251612 A G USH2A Silent p.N1797N 0.03 TCGA-QK-A8ZA-01 1 224009053 224009053 T C TP53BP2 Missense_Mutation p.Y15C 0.26 deleterious(0) possibly_damaging(0.907) TCGA-QK-A8ZA-01 1 22927807 22927807 C T EPHA8 Missense_Mutation p.A915V 0.39 tolerated(0.47) benign(0.039) TCGA-QK-A8ZA-01 1 237780681 237780681 A G RYR2 Silent p.Q1937Q 0.25 TCGA-QK-A8ZA-01 1 240635540 240635540 T A FMN2 Intron 0.33 TCGA-QK-A8ZA-01 1 240939500 240939500 G T RGS7 Missense_Mutation p.T476K 0.23 tolerated(0.23) possibly_damaging(0.742) TCGA-QK-A8ZA-01 1 248059913 248059913 C A OR2W3 3'UTR 0.25 TCGA-QK-A8ZA-01 1 26189512 26189512 C T PAQR7 Silent p.Q273Q 0.30 TCGA-QK-A8ZA-01 1 33836668 33836668 T C PHC2 Missense_Mutation p.S121G 0.36 tolerated(0.19) benign(0) TCGA-QK-A8ZA-01 1 59002191 59002191 A G OMA1 Silent p.Y241Y 0.46 TCGA-QK-A8ZA-01 1 89661101 89661101 G C GBP4 Missense_Mutation p.P81R 0.42 tolerated(0.18) benign(0.071) TCGA-QK-A8ZA-01 1 91861942 91861942 G T HFM1 Nonsense_Mutation p.S31* 0.33 TCGA-QK-A8ZA-01 20 25276271 25276272 - T PYGB Frame_Shift_Ins p.M782Ifs*34 0.33 TCGA-QK-A8ZA-01 20 31676772 31676772 G T BPIFB4 Silent p.G309G 0.34 TCGA-QK-A8ZA-01 20 37191317 37191317 A G RALGAPB Missense_Mutation p.D1225G 0.41 tolerated(0.23) benign(0) TCGA-QK-A8ZA-01 20 62326980 62326980 G T RTEL1 Intron 0.66 TCGA-QK-A8ZA-01 22 31289198 31289198 C T OSBP2 Silent p.F653F 0.19 TCGA-QK-A8ZA-01 22 43455461 43455461 C A TTLL1 Missense_Mutation p.G274C 0.18 deleterious(0) probably_damaging(0.999) TCGA-QK-A8ZA-01 22 46722368 46722368 C G GTSE1 Missense_Mutation p.S514C 0.35 deleterious(0.02) possibly_damaging(0.874) TCGA-QK-A8ZA-01 22 50688654 50688654 C T HDAC10 Intron 0.14 TCGA-QK-A8ZA-01 2 113832325 113832325 A T IL1F10 Missense_Mutation p.R48S 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-QK-A8ZA-01 2 120702750 120702750 G A PTPN4 Silent p.S483S 0.34 TCGA-QK-A8ZA-01 2 152236028 152236028 G T TNFAIP6 Missense_Mutation p.G272V 0.10 deleterious_low_confidence(0) possibly_damaging(0.568) TCGA-QK-A8ZA-01 2 179582909 179582909 G T TTN Missense_Mutation p.A8275E 0.49 TCGA-QK-A8ZA-01 2 182360528 182360528 T G ITGA4 Missense_Mutation p.I468M 0.16 deleterious(0.04) probably_damaging(0.965) TCGA-QK-A8ZA-01 2 197171917 197171917 C T HECW2 Missense_Mutation p.E876K 0.76 deleterious(0.02) benign(0.165) TCGA-QK-A8ZA-01 2 210905062 210905062 T G KANSL1L Intron 0.53 TCGA-QK-A8ZA-01 2 212251650 212251650 G C ERBB4 Missense_Mutation p.P1137A 0.45 tolerated(0.42) benign(0.001) TCGA-QK-A8ZA-01 2 220290743 220290743 C A DES 3'UTR 0.77 TCGA-QK-A8ZA-01 2 225368438 225368439 - A CUL3 Frame_Shift_Ins p.L436Ffs*9 0.37 TCGA-QK-A8ZA-01 2 234622174 234622174 T C UGT1A5 Silent p.D179D 0.57 TCGA-QK-A8ZA-01 2 39406359 39406359 C T CDKL4 Missense_Mutation p.R299H 0.31 tolerated(0.09) benign(0.001) TCGA-QK-A8ZA-01 2 51255250 51255250 C G NRXN1 Missense_Mutation p.M54I 0.17 tolerated(0.08) benign(0.022) TCGA-QK-A8ZA-01 2 71043145 71043145 T C CLEC4F Silent p.E456E 0.44 TCGA-QK-A8ZA-01 2 74595945 74595945 C T DCTN1 Silent p.L588L 0.20 TCGA-QK-A8ZA-01 3 124103731 124103731 G C KALRN Missense_Mutation p.E602Q 0.30 deleterious(0.04) unknown(0) TCGA-QK-A8ZA-01 3 143708593 143708593 G A C3orf58 Silent p.E401E 0.23 TCGA-QK-A8ZA-01 3 145838903 145838903 C T PLOD2 Missense_Mutation p.E112K 0.14 deleterious(0) benign(0.138) TCGA-QK-A8ZA-01 3 158539845 158539845 C T MFSD1 Silent p.I380I 0.28 TCGA-QK-A8ZA-01 3 193128809 193128809 G C ATP13A4 Missense_Mutation p.L1087V 0.13 tolerated(0.07) benign(0.06) TCGA-QK-A8ZA-01 3 49896651 49896651 C T CAMKV 3'UTR 0.92 TCGA-QK-A8ZA-01 3 50223340 50223340 T G SEMA3F Missense_Mutation p.S536A 0.73 deleterious(0) probably_damaging(0.995) TCGA-QK-A8ZA-01 3 69168368 69168368 G A LMOD3 Missense_Mutation p.P380S 0.73 deleterious(0.04) probably_damaging(0.976) TCGA-QK-A8ZA-01 4 141598221 141598221 G A TBC1D9 Missense_Mutation p.R296C 0.32 deleterious(0.05) probably_damaging(0.999) TCGA-QK-A8ZA-01 5 127609536 127609536 A G FBN2 Silent p.C2612C 0.08 TCGA-QK-A8ZA-01 5 13864598 13864598 G A DNAH5 Missense_Mutation p.L1502F 0.17 benign(0.002) TCGA-QK-A8ZA-01 5 140474518 140474518 C A PCDHB2 Silent p.A48A 0.41 TCGA-QK-A8ZA-01 5 140537748 140537748 G A PCDHB17 3'UTR 0.30 TCGA-QK-A8ZA-01 5 140562743 140562743 G T PCDHB16 Missense_Mutation p.E203D 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QK-A8ZA-01 5 140751223 140751223 C T PCDHGB3 Missense_Mutation p.T421M 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-QK-A8ZA-01 5 170626766 170626766 G C RANBP17 Missense_Mutation p.E711Q 0.13 tolerated(0.25) benign(0.287) TCGA-QK-A8ZA-01 5 177547308 177547308 T - N4BP3 Frame_Shift_Del p.C154Afs*5 0.42 TCGA-QK-A8ZA-01 5 178359312 178359312 A C ZFP2 Missense_Mutation p.K333T 0.40 deleterious(0) probably_damaging(0.983) TCGA-QK-A8ZA-01 5 92929485 92929485 C A NR2F1 Silent p.I403I 0.58 TCGA-QK-A8ZA-01 5 96215743 96215743 G A ERAP2 Silent p.T118T 0.09 TCGA-QK-A8ZA-01 6 138607857 138607857 T C KIAA1244 Silent p.Y863Y 0.70 TCGA-QK-A8ZA-01 6 151674171 151674171 C A AKAP12 Missense_Mutation p.L1549I 0.62 tolerated(0.11) possibly_damaging(0.86) TCGA-QK-A8ZA-01 6 26235027 26235027 G A HIST1H1D Silent p.I45I 0.32 TCGA-QK-A8ZA-01 6 33052779 33052779 C A HLA-DPB1 Missense_Mutation p.H139Q 0.14 deleterious(0.01) benign(0.117) TCGA-QK-A8ZA-01 6 33165642 33165642 G A RXRB Silent p.Y239Y 0.20 TCGA-QK-A8ZA-01 6 35389701 35389701 C G PPARD Missense_Mutation p.F130L 0.15 tolerated(0.26) probably_damaging(0.996) TCGA-QK-A8ZA-01 6 43173746 43173746 C T CUL9 Missense_Mutation p.H1599Y 0.15 tolerated(0.74) benign(0.012) TCGA-QK-A8ZA-01 6 46761204 46761204 G T MEP1A Silent p.P23P 0.08 TCGA-QK-A8ZA-01 6 63995647 63995647 C T LGSN Missense_Mutation p.D59N 0.23 tolerated(0.4) benign(0.004) TCGA-QK-A8ZA-01 6 64395059 64395059 C G PHF3 Missense_Mutation p.S479C 0.38 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-QK-A8ZA-01 6 88229385 88229385 T A RARS2 Missense_Mutation p.T385S 0.05 deleterious(0.03) probably_damaging(1) TCGA-QK-A8ZA-01 7 103180650 103180650 G A RELN Silent p.I2308I 0.08 TCGA-QK-A8ZA-01 7 124503531 124503531 G A POT1 Missense_Mutation p.A140V 0.42 deleterious(0.04) possibly_damaging(0.686) TCGA-QK-A8ZA-01 7 140266930 140266930 C T DENND2A Missense_Mutation p.G579R 0.32 tolerated(0.14) probably_damaging(0.974) TCGA-QK-A8ZA-01 7 31746831 31746831 C G PPP1R17 Silent p.L134L 0.41 TCGA-QK-A8ZA-01 7 35144299 35144299 G A DPY19L2P1 RNA 0.42 TCGA-QK-A8ZA-01 7 48550759 48550759 A T ABCA13 Missense_Mutation p.N4535I 0.13 probably_damaging(1) TCGA-QK-A8ZA-01 7 7413079 7413079 A G COL28A1 Missense_Mutation p.F820L 0.36 deleterious(0.02) benign(0.118) TCGA-QK-A8ZA-01 7 75174423 75174423 C T HIP1 Missense_Mutation p.A875T 0.32 deleterious(0) probably_damaging(0.997) TCGA-QK-A8ZA-01 7 91732036 91732036 G C AKAP9 Silent p.R3742R 0.05 TCGA-QK-A8ZA-01 8 105160838 105160838 C G RIMS2 Intron 0.93 TCGA-QK-A8ZA-01 8 28608391 28608391 G A EXTL3 3'UTR 0.10 TCGA-QK-A8ZA-01 8 2966213 2966213 G A CSMD1 Silent p.L2222L 0.64 TCGA-QK-A8ZA-01 8 48713402 48713402 A T PRKDC Silent p.A3355A 0.46 TCGA-QK-A8ZA-01 8 69552706 69552706 C T C8orf34 Nonsense_Mutation p.Q401* 0.16 TCGA-QK-A8ZA-01 8 72211886 72211886 T C EYA1 Missense_Mutation p.N209S 0.10 tolerated(1) possibly_damaging(0.493) TCGA-QK-A8ZA-01 8 81555345 81555345 G A ZNF704 Missense_Mutation p.P351L 0.15 tolerated(0.06) benign(0.001) TCGA-QK-A8ZA-01 9 125673511 125673511 C T ZBTB6 Missense_Mutation p.E281K 0.15 tolerated(0.8) benign(0.022) TCGA-QK-A8ZA-01 9 13247754 13247754 C G MPDZ Silent p.L21L 0.67 TCGA-QK-A8ZA-01 9 139412381 139412381 G T NOTCH1 Missense_Mutation p.P422T 0.65 deleterious(0) probably_damaging(1) TCGA-QK-A8ZA-01 9 3248121 3248121 G A RFX3 Missense_Mutation p.R627C 0.29 deleterious(0) probably_damaging(0.98) TCGA-QK-A8ZA-01 9 35103079 35103079 C T STOML2 Missense_Mutation p.A5T 0.22 tolerated(0.16) unknown(0) TCGA-QK-A8ZA-01 9 37740302 37740302 G A FRMPD1 Missense_Mutation p.A593T 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-QK-A8ZA-01 9 39117989 39117989 T C CNTNAP3 Intron 0.20 TCGA-QK-A8ZA-01 X 101408955 101408955 T A BEX5 Missense_Mutation p.I95L 0.86 tolerated(0.11) benign(0.111) TCGA-QK-A8ZA-01 X 114141800 114141800 G C HTR2C Missense_Mutation p.R400T 0.35 tolerated(0.65) benign(0.008) TCGA-QK-A8ZA-01 X 37660565 37660565 G C CYBB Silent p.R287R 0.06 TCGA-QK-A8ZA-01 X 48887896 48887896 G C TFE3 Missense_Mutation p.L501V 0.25 tolerated(0.4) possibly_damaging(0.694) TCGA-QK-A8ZA-01 X 5821608 5821608 C A NLGN4X Missense_Mutation p.V371F 0.38 deleterious(0) probably_damaging(0.998) TCGA-QK-A8ZB-01 10 115365936 115365936 C T NRAP Splice_Site p.X1269_splice 0.07 TCGA-QK-A8ZB-01 10 121586558 121586558 C G INPP5F Missense_Mutation p.L889V 0.20 deleterious(0) probably_damaging(0.997) TCGA-QK-A8ZB-01 10 123276852 123276852 T C FGFR2 Intron 0.09 TCGA-QK-A8ZB-01 10 68686951 68686951 G C LRRTM3 Missense_Mutation p.D93H 0.23 deleterious(0) probably_damaging(1) TCGA-QK-A8ZB-01 10 72195488 72195488 C T NODAL Missense_Mutation p.G149S 0.12 tolerated(0.44) possibly_damaging(0.769) TCGA-QK-A8ZB-01 11 101762128 101762128 G C ANGPTL5 Missense_Mutation p.S350C 0.26 deleterious(0.01) possibly_damaging(0.591) TCGA-QK-A8ZB-01 11 1096359 1096359 C A MUC2 Silent p.V2128V 0.22 TCGA-QK-A8ZB-01 11 113126633 113126633 G A NCAM1 Missense_Mutation p.M670I 0.22 tolerated(0.65) benign(0.001) TCGA-QK-A8ZB-01 11 118772025 118772025 G A BCL9L Silent p.P809P 0.20 TCGA-QK-A8ZB-01 11 118963891 118963891 G A HMBS Silent p.Q328Q 0.26 TCGA-QK-A8ZB-01 11 119029033 119029033 C T ABCG4 Silent p.L386L 0.29 TCGA-QK-A8ZB-01 11 121420792 121420792 G A SORL1 Silent p.T725T 0.18 TCGA-QK-A8ZB-01 11 123894176 123894176 C T OR10G9 Silent p.L153L 0.20 TCGA-QK-A8ZB-01 11 17793572 17793572 C T KCNC1 Missense_Mutation p.R311C 0.28 deleterious(0) probably_damaging(0.988) TCGA-QK-A8ZB-01 11 47377022 47377022 C A SPI1 Missense_Mutation p.W191L 0.11 deleterious(0) probably_damaging(0.999) TCGA-QK-A8ZB-01 11 5537120 5537120 A T UBQLNL Silent p.L184L 0.25 TCGA-QK-A8ZB-01 11 62291818 62291818 A G AHNAK Silent p.F3357F 0.06 TCGA-QK-A8ZB-01 11 66001279 66001279 C T PACS1 Missense_Mutation p.P621L 0.15 tolerated(0.05) probably_damaging(1) TCGA-QK-A8ZB-01 11 66188698 66188698 C G NPAS4 Missense_Mutation p.I16M 0.29 deleterious(0) probably_damaging(0.999) TCGA-QK-A8ZB-01 11 72295279 72295279 G A PDE2A Missense_Mutation p.A539V 0.29 deleterious(0) probably_damaging(0.979) TCGA-QK-A8ZB-01 12 124268630 124268630 C A DNAH10 Missense_Mutation p.A318D 0.19 benign(0.015) TCGA-QK-A8ZB-01 12 13715930 13715930 C T GRIN2B Silent p.A1414A 0.24 TCGA-QK-A8ZB-01 12 21624400 21624400 C T RECQL Silent p.E543E 0.19 TCGA-QK-A8ZB-01 12 49420547 49420565 CCGTGGACCAAAGGGCACA - KMT2D Frame_Shift_Del p.C5062Rfs*10 0.20 TCGA-QK-A8ZB-01 12 52754603 52754603 G T KRT85 3'UTR 0.24 TCGA-QK-A8ZB-01 12 56495393 56495393 G A ERBB3 Missense_Mutation p.E1195K 0.24 deleterious(0.04) benign(0.115) TCGA-QK-A8ZB-01 12 6483990 6483990 T C SCNN1A Missense_Mutation p.E46G 0.23 tolerated_low_confidence(0.13) benign(0.025) TCGA-QK-A8ZB-01 12 7064379 7064379 C G PTPN6 Missense_Mutation p.F194L 0.21 deleterious(0) possibly_damaging(0.585) TCGA-QK-A8ZB-01 12 81778024 81778024 C A PPFIA2 Splice_Site p.X255_splice 0.18 TCGA-QK-A8ZB-01 13 52684488 52684488 C G NEK5 Missense_Mutation p.R152T 0.13 deleterious(0) probably_damaging(0.998) TCGA-QK-A8ZB-01 14 45658278 45658278 G C FANCM Missense_Mutation p.E1685Q 0.05 tolerated(0.18) benign(0.282) TCGA-QK-A8ZB-01 14 52481889 52481889 C A NID2 Missense_Mutation p.D1045Y 0.08 deleterious(0.01) possibly_damaging(0.707) TCGA-QK-A8ZB-01 15 25436596 25436596 G C SNORD115-12 RNA 0.03 TCGA-QK-A8ZB-01 15 49160017 49160017 C T SHC4 Missense_Mutation p.R315Q 0.15 deleterious(0) probably_damaging(1) TCGA-QK-A8ZB-01 15 54860076 54860076 G T UNC13C Missense_Mutation p.A2013S 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QK-A8ZB-01 15 70959891 70959891 C G UACA Missense_Mutation p.L1044F 0.30 deleterious(0) probably_damaging(0.912) TCGA-QK-A8ZB-01 15 75968110 75968110 G C CSPG4 Missense_Mutation p.N2250K 0.20 deleterious(0.05) possibly_damaging(0.831) TCGA-QK-A8ZB-01 15 99023882 99023882 T A FAM169B Missense_Mutation p.K44I 0.20 deleterious(0) probably_damaging(0.971) TCGA-QK-A8ZB-01 16 28967572 28967572 G A NFATC2IP Missense_Mutation p.E254K 0.14 tolerated(0.1) probably_damaging(0.987) TCGA-QK-A8ZB-01 16 4723654 4723654 G A MGRN1 Silent p.R317R 0.26 TCGA-QK-A8ZB-01 17 16701640 16701640 G C CCDC144A 3'UTR 0.19 TCGA-QK-A8ZB-01 17 2323740 2323740 C T METTL16 Missense_Mutation p.A405T 0.15 tolerated(0.27) benign(0.02) TCGA-QK-A8ZB-01 17 27233293 27233293 C T PHF12 Missense_Mutation p.D975N 0.14 tolerated_low_confidence(0.07) benign(0.121) TCGA-QK-A8ZB-01 17 27903261 27903261 G A GIT1 Missense_Mutation p.R539W 0.26 deleterious(0) possibly_damaging(0.893) TCGA-QK-A8ZB-01 17 27904726 27904726 C A GIT1 Silent p.V315V 0.23 TCGA-QK-A8ZB-01 17 33749590 33749590 C G SLFN12 Missense_Mutation p.R153T 0.12 tolerated(0.57) benign(0.15) TCGA-QK-A8ZB-01 17 39551731 39551731 G A KRT31 Nonsense_Mutation p.Q245* 0.16 TCGA-QK-A8ZB-01 17 4534988 4534988 G A ALOX15 Silent p.A632A 0.22 TCGA-QK-A8ZB-01 17 46136269 46136276 GACTCTGA - NFE2L1 Frame_Shift_Del p.S530Pfs*15 0.16 TCGA-QK-A8ZB-01 17 5072206 5072206 C A USP6 Missense_Mutation p.P1125T 0.48 tolerated_low_confidence(0.54) benign(0.439) TCGA-QK-A8ZB-01 17 65134094 65134094 T G HELZ Missense_Mutation p.K969T 0.21 deleterious(0) probably_damaging(0.994) TCGA-QK-A8ZB-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.40 TCGA-QK-A8ZB-01 17 9774131 9774131 G T GLP2R Missense_Mutation p.C375F 0.21 deleterious(0.03) probably_damaging(0.942) TCGA-QK-A8ZB-01 17 9792828 9792828 C T GLP2R Missense_Mutation p.L490F 0.45 tolerated(0.06) benign(0.007) TCGA-QK-A8ZB-01 18 13387658 13387658 C T LDLRAD4 5'UTR 0.11 TCGA-QK-A8ZB-01 18 14534973 14534973 C T POTEC Missense_Mutation p.E282K 0.14 tolerated(0.24) benign(0.099) TCGA-QK-A8ZB-01 18 29848516 29848516 T A GAREM Missense_Mutation p.Y650F 0.17 deleterious(0.05) probably_damaging(0.93) TCGA-QK-A8ZB-01 18 47323932 47323932 A T ACAA2 Missense_Mutation p.H72Q 0.26 tolerated(0.15) probably_damaging(1) TCGA-QK-A8ZB-01 19 17922559 17922559 G A B3GNT3 Nonsense_Mutation p.W249* 0.06 TCGA-QK-A8ZB-01 19 35632082 35632082 C G FXYD1 Silent p.L47L 0.18 TCGA-QK-A8ZB-01 19 42218891 42218891 G T CEACAM5 Silent p.P142P 0.06 TCGA-QK-A8ZB-01 19 44612185 44612185 C G ZNF224 Silent p.L624L 0.16 TCGA-QK-A8ZB-01 19 49964134 49964134 G A ALDH16A1 Silent p.R185R 0.28 TCGA-QK-A8ZB-01 19 50309133 50309133 C G AP2A1 Missense_Mutation p.Q886E 0.15 tolerated(0.12) benign(0.219) TCGA-QK-A8ZB-01 19 55450612 55450612 G A NLRP7 Silent p.L525L 0.15 TCGA-QK-A8ZB-01 19 56658410 56658410 C G ZNF444 Missense_Mutation p.L44V 0.25 deleterious(0) probably_damaging(0.998) TCGA-QK-A8ZB-01 19 57050546 57050546 C T ZFP28 Silent p.L53L 0.44 TCGA-QK-A8ZB-01 1 10240086 10240086 G A UBE4B 3'UTR 0.14 TCGA-QK-A8ZB-01 1 150049207 150049207 A T VPS45 Silent p.T158T 0.17 TCGA-QK-A8ZB-01 1 162546694 162546694 T G UAP1 Missense_Mutation p.F136L 0.08 deleterious(0.04) possibly_damaging(0.653) TCGA-QK-A8ZB-01 1 16260177 16260177 C T SPEN Missense_Mutation p.S2481L 0.22 benign(0) TCGA-QK-A8ZB-01 1 16895685 16895685 C G NBPF1 Missense_Mutation p.D833H 0.05 deleterious(0) probably_damaging(0.965) TCGA-QK-A8ZB-01 1 18152993 18152993 T A ACTL8 Nonsense_Mutation p.Y360* 0.20 TCGA-QK-A8ZB-01 1 205210900 205210900 C T TMCC2 Missense_Mutation p.P159S 0.28 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-QK-A8ZB-01 1 216260136 216260136 T C USH2A Missense_Mutation p.T1638A 0.32 benign(0.134) TCGA-QK-A8ZB-01 1 220364494 220364494 T C RAB3GAP2 Missense_Mutation p.Y468C 0.19 deleterious(0) probably_damaging(1) TCGA-QK-A8ZB-01 1 228451984 228451984 G T OBSCN Missense_Mutation p.V1769L 0.25 benign(0.107) TCGA-QK-A8ZB-01 1 22915727 22915727 G A EPHA8 Intron 0.19 TCGA-QK-A8ZB-01 1 236717934 236717934 C T HEATR1 Silent p.E2014E 0.16 TCGA-QK-A8ZB-01 1 237817654 237817654 A C RYR2 Missense_Mutation p.E2635D 0.18 benign(0.024) TCGA-QK-A8ZB-01 1 46650727 46650727 C T TSPAN1 Silent p.N178N 0.16 TCGA-QK-A8ZB-01 20 35696405 35696405 G A RBL1 Nonsense_Mutation p.R159* 0.16 TCGA-QK-A8ZB-01 20 44597011 44597011 G A ZNF335 Intron 0.25 TCGA-QK-A8ZB-01 20 49620823 49620823 G A KCNG1 Missense_Mutation p.P432L 0.27 deleterious(0) probably_damaging(1) TCGA-QK-A8ZB-01 20 60705703 60705703 G A LSM14B Missense_Mutation p.R264Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-QK-A8ZB-01 21 35742922 35742922 G A KCNE2 Missense_Mutation p.V49I 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-QK-A8ZB-01 21 46074226 46074226 T A KRTAP12-4 Missense_Mutation p.R102S 0.20 deleterious(0) possibly_damaging(0.765) TCGA-QK-A8ZB-01 22 22843645 22843645 C G ZNF280B Missense_Mutation p.D27H 0.27 deleterious(0) probably_damaging(0.988) TCGA-QK-A8ZB-01 2 142004875 142004875 T C LRP1B Missense_Mutation p.N171S 0.19 possibly_damaging(0.621) TCGA-QK-A8ZB-01 2 178565870 178565870 G C PDE11A Silent p.A741A 0.43 TCGA-QK-A8ZB-01 2 179428531 179428531 C T TTN Missense_Mutation p.R27443H 0.16 TCGA-QK-A8ZB-01 2 179429356 179429356 C T TTN Missense_Mutation p.R27168H 0.12 TCGA-QK-A8ZB-01 2 74454158 74454158 G C SLC4A5 Missense_Mutation p.L1022V 0.14 tolerated(0.4) probably_damaging(0.939) TCGA-QK-A8ZB-01 2 95846949 95846949 G C ZNF2 Missense_Mutation p.E126Q 0.05 tolerated(0.12) benign(0.046) TCGA-QK-A8ZB-01 3 128707593 128707593 A G KIAA1257 Missense_Mutation p.V144A 0.14 deleterious(0.03) possibly_damaging(0.537) TCGA-QK-A8ZB-01 3 179052196 179052196 C T ZNF639 Missense_Mutation p.H482Y 0.15 deleterious(0) probably_damaging(0.954) TCGA-QK-A8ZB-01 4 126411348 126411348 C A FAT4 Missense_Mutation p.H4457Q 0.13 benign(0.332) TCGA-QK-A8ZB-01 4 134073649 134073649 C T PCDH10 Missense_Mutation p.S785L 0.28 tolerated(0.12) probably_damaging(0.989) TCGA-QK-A8ZB-01 4 159789958 159789958 T G FNIP2 Missense_Mutation p.F724V 0.28 deleterious(0) benign(0) TCGA-QK-A8ZB-01 4 1730043 1730043 C A TACC3 Missense_Mutation p.T305N 0.12 tolerated(0.42) benign(0.074) TCGA-QK-A8ZB-01 4 1730058 1730058 C A TACC3 Missense_Mutation p.A310D 0.12 deleterious(0.04) benign(0.077) TCGA-QK-A8ZB-01 4 77691933 77691933 G A SHROOM3 Missense_Mutation p.R1835K 0.21 tolerated(1) benign(0.002) TCGA-QK-A8ZB-01 5 140530440 140530440 G A PCDHB6 Missense_Mutation p.R201H 0.24 tolerated(0.08) benign(0.203) TCGA-QK-A8ZB-01 5 140595705 140595705 C T PCDHB13 Silent p.Y670Y 0.38 TCGA-QK-A8ZB-01 5 5239807 5239807 G A ADAMTS16 Missense_Mutation p.M764I 0.20 tolerated(0.27) benign(0.004) TCGA-QK-A8ZB-01 5 55256304 55256304 C T IL6ST Missense_Mutation p.R300H 0.25 deleterious(0) possibly_damaging(0.823) TCGA-QK-A8ZB-01 5 82835881 82835881 G A VCAN Silent p.T2353T 0.09 TCGA-QK-A8ZB-01 6 101073102 101073102 T C ASCC3 Missense_Mutation p.D1584G 0.13 deleterious(0.01) benign(0.101) TCGA-QK-A8ZB-01 6 143095507 143095507 C A HIVEP2 Silent p.P123P 0.25 TCGA-QK-A8ZB-01 6 159464620 159464620 C A TAGAP Splice_Site p.X50_splice 0.25 TCGA-QK-A8ZB-01 6 26423441 26423441 C G BTN2A3P RNA 0.21 TCGA-QK-A8ZB-01 6 56716356 56716356 T C RP11-472M19.2 Intron 0.27 TCGA-QK-A8ZB-01 6 64416061 64416061 C A PHF3 Missense_Mutation p.F1170L 0.10 tolerated(1) benign(0.002) TCGA-QK-A8ZB-01 6 84233607 84233607 G A PRSS35 Silent p.K149K 0.19 TCGA-QK-A8ZB-01 7 15599873 15599873 C G AGMO Missense_Mutation p.L50F 0.17 tolerated(0.3) benign(0.005) TCGA-QK-A8ZB-01 7 37780629 37780629 C T GPR141 Missense_Mutation p.R212C 0.15 tolerated(0.05) probably_damaging(0.912) TCGA-QK-A8ZB-01 7 99964984 99964984 C T PILRB Missense_Mutation p.P223L 0.18 tolerated(0.39) benign(0.005) TCGA-QK-A8ZB-01 8 106811156 106811156 T A ZFPM2 Missense_Mutation p.M315K 0.20 tolerated(0.66) benign(0.417) TCGA-QK-A8ZB-01 8 11301803 11301803 C G FAM167A Missense_Mutation p.E40Q 0.25 tolerated(0.82) benign(0.139) TCGA-QK-A8ZB-01 8 113651006 113651006 G C CSMD3 Missense_Mutation p.L1149V 0.14 tolerated(0.08) possibly_damaging(0.9) TCGA-QK-A8ZB-01 8 113668571 113668571 C A CSMD3 Splice_Site p.X939_splice 0.18 TCGA-QK-A8ZB-01 8 121228647 121228647 G A COL14A1 Missense_Mutation p.R552Q 0.09 tolerated(0.1) possibly_damaging(0.7) TCGA-QK-A8ZB-01 8 125498293 125498293 C G RNF139 Missense_Mutation p.L135V 0.07 deleterious(0.02) probably_damaging(0.936) TCGA-QK-A8ZB-01 8 144941937 144941937 C T EPPK1 Missense_Mutation p.E1829K 0.04 benign(0.002) TCGA-QK-A8ZB-01 8 30402090 30402090 G A RBPMS Silent p.A159A 0.23 TCGA-QK-A8ZB-01 9 123595678 123595678 G A PSMD5 Missense_Mutation p.P77L 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-QK-A8ZB-01 9 21970900 21970900 C A CDKN2A Splice_Site p.X153_splice 0.33 TCGA-QK-A8ZB-01 X 117527030 117527030 G T WDR44 Nonsense_Mutation p.E208* 0.06 TCGA-QK-A8ZB-01 X 150349760 150349760 G T GPR50 Missense_Mutation p.A569S 0.49 tolerated_low_confidence(0.85) benign(0.001) TCGA-QK-AA3J-01 10 123239272 123239272 T G FGFR2 3'Flank 0.27 TCGA-QK-AA3J-01 10 43615160 43615160 C T RET Silent p.I858I 0.34 TCGA-QK-AA3J-01 10 50724174 50724174 C T ERCC6-PGBD3 Silent p.A797A 0.35 TCGA-QK-AA3J-01 10 62551943 62551943 G A CDK1 Missense_Mutation p.V231M 0.27 deleterious(0.02) possibly_damaging(0.887) TCGA-QK-AA3J-01 10 70928349 70928349 C G VPS26A Missense_Mutation p.L278V 0.20 deleterious(0) probably_damaging(0.99) TCGA-QK-AA3J-01 10 73588703 73588703 G C PSAP Silent p.A169A 0.42 TCGA-QK-AA3J-01 11 107965182 107965182 C A CUL5 Missense_Mutation p.S503Y 0.66 deleterious(0) probably_damaging(1) TCGA-QK-AA3J-01 11 116747727 116747727 C A SIK3 Silent p.V241V 0.61 TCGA-QK-AA3J-01 11 118886642 118886642 G A RPS25 Silent p.I97I 0.58 TCGA-QK-AA3J-01 11 123901206 123901206 G A OR10G8 Missense_Mutation p.E293K 0.49 deleterious(0) benign(0.345) TCGA-QK-AA3J-01 11 22283839 22283839 G A ANO5 Missense_Mutation p.E599K 0.41 deleterious(0) probably_damaging(0.999) TCGA-QK-AA3J-01 11 46564345 46564345 G A AMBRA1 Nonsense_Mutation p.R318* 0.58 TCGA-QK-AA3J-01 11 48510887 48510887 C G OR4A47 Silent p.P181P 0.24 TCGA-QK-AA3J-01 11 55033157 55033157 A G TRIM48 Missense_Mutation p.I181V 0.10 tolerated(0.38) benign(0.025) TCGA-QK-AA3J-01 11 55322004 55322004 T C OR4C15 Silent p.N74N 0.35 TCGA-QK-AA3J-01 11 62365526 62365526 G C MTA2 Missense_Mutation p.Q154E 0.35 deleterious(0) probably_damaging(0.981) TCGA-QK-AA3J-01 11 64129454 64129454 C T RPS6KA4 Missense_Mutation p.R296W 0.39 deleterious(0) possibly_damaging(0.512) TCGA-QK-AA3J-01 11 65487178 65487178 G A RNASEH2C 3'UTR 0.32 TCGA-QK-AA3J-01 11 65790418 65790418 G A CATSPER1 Missense_Mutation p.T444I 0.43 tolerated(0.12) possibly_damaging(0.562) TCGA-QK-AA3J-01 12 111758298 111758298 G A CUX2 Missense_Mutation p.E829K 0.47 tolerated(0.38) benign(0.067) TCGA-QK-AA3J-01 12 120535128 120535128 A G RAB35 Missense_Mutation p.L176P 0.27 tolerated(0.35) benign(0) TCGA-QK-AA3J-01 12 123201285 123201285 G C HCAR3 5'UTR 0.26 TCGA-QK-AA3J-01 12 133235883 133235883 C G POLE Missense_Mutation p.E1091D 0.32 deleterious(0.03) possibly_damaging(0.539) TCGA-QK-AA3J-01 12 52985358 52985358 C T KRT72 Missense_Mutation p.D285N 0.38 deleterious(0) probably_damaging(1) TCGA-QK-AA3J-01 12 99056236 99056236 C T APAF1 Missense_Mutation p.S238F 0.40 deleterious(0) probably_damaging(0.916) TCGA-QK-AA3J-01 13 67802354 67802354 G T PCDH9 Silent p.A73A 0.40 TCGA-QK-AA3J-01 14 107178825 107178825 G A IGHV2-70 Missense_Mutation p.R118W 0.15 deleterious(0) benign(0.022) TCGA-QK-AA3J-01 14 23446009 23446009 T A AJUBA Intron 0.68 TCGA-QK-AA3J-01 14 52782091 52782091 C T PTGER2 Silent p.V275V 0.29 TCGA-QK-AA3J-01 14 65216707 65216707 A C SPTB Missense_Mutation p.F2256L 0.44 tolerated(0.13) benign(0.381) TCGA-QK-AA3J-01 15 49170407 49170407 G C EID1 Missense_Mutation p.E12Q 0.04 tolerated(0.07) unknown(0) TCGA-QK-AA3J-01 15 62212349 62212349 T A VPS13C Missense_Mutation p.E2465V 0.30 deleterious(0) possibly_damaging(0.493) TCGA-QK-AA3J-01 16 2226127 2226127 C T TRAF7 Silent p.I608I 0.41 TCGA-QK-AA3J-01 16 2314698 2314698 C G RNPS1 5'UTR 0.20 TCGA-QK-AA3J-01 16 30960744 30960744 C G ORAI3 Missense_Mutation p.S45W 0.31 deleterious(0) probably_damaging(0.997) TCGA-QK-AA3J-01 16 31092273 31092273 C T ZNF646 Missense_Mutation p.S1543L 0.43 tolerated(0.2) benign(0.003) TCGA-QK-AA3J-01 16 4750894 4750894 T C ANKS3 Intron 0.34 TCGA-QK-AA3J-01 16 67237418 67237418 T C ELMO3 Missense_Mutation p.F681L 0.27 deleterious(0) probably_damaging(0.998) TCGA-QK-AA3J-01 16 71605536 71605536 G C TAT Missense_Mutation p.I244M 0.23 deleterious(0) probably_damaging(0.995) TCGA-QK-AA3J-01 16 88017810 88017810 C T BANP Missense_Mutation p.P95S 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.655) TCGA-QK-AA3J-01 17 10354706 10354706 C T MYH4 Missense_Mutation p.E1268K 0.33 deleterious(0) benign(0.201) TCGA-QK-AA3J-01 17 12799758 12799758 C T ARHGAP44 Missense_Mutation p.S43F 0.47 tolerated(0.07) benign(0.209) TCGA-QK-AA3J-01 17 12915013 12915013 C T ELAC2 Missense_Mutation p.E216K 0.12 tolerated(0.86) benign(0.002) TCGA-QK-AA3J-01 17 1679892 1679906 AATTTGACCTTGATA - SERPINF1 In_Frame_Del p.N285_I289del 0.67 TCGA-QK-AA3J-01 17 18220876 18220876 C A SMCR8 Missense_Mutation p.S591R 0.46 deleterious(0.03) benign(0.171) TCGA-QK-AA3J-01 17 26955427 26955427 A C KIAA0100 Missense_Mutation p.S1484A 0.34 tolerated(0.08) benign(0.309) TCGA-QK-AA3J-01 17 27591595 27591595 T A NUFIP2 Missense_Mutation p.I684F 0.38 deleterious(0) benign(0.04) TCGA-QK-AA3J-01 17 30648107 30648107 G A RHBDL3 Silent p.L358L 0.31 TCGA-QK-AA3J-01 17 33769076 33769076 G C SLFN13 Silent p.L476L 0.17 TCGA-QK-AA3J-01 17 7249724 7249724 G A ACAP1 Silent p.V307V 0.04 TCGA-QK-AA3J-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.79 deleterious(0) probably_damaging(1) TCGA-QK-AA3J-01 17 77079611 77079611 C T ENGASE Missense_Mutation p.S397F 0.74 deleterious(0) probably_damaging(0.936) TCGA-QK-AA3J-01 18 11884289 11884289 T C MPPE1 3'UTR 0.29 TCGA-QK-AA3J-01 18 13100341 13100341 A T CEP192 Missense_Mutation p.Q2234L 0.36 deleterious(0.03) possibly_damaging(0.705) TCGA-QK-AA3J-01 18 14784471 14784471 G A ANKRD30B Missense_Mutation p.E537K 0.28 tolerated(0.22) benign(0.046) TCGA-QK-AA3J-01 18 29410790 29410790 C T TRAPPC8 Silent p.S1412S 0.36 TCGA-QK-AA3J-01 19 10571732 10571732 A T PDE4A Missense_Mutation p.H473L 0.34 deleterious(0) probably_damaging(0.992) TCGA-QK-AA3J-01 19 10798292 10798292 A G ILF3 Missense_Mutation p.Y781C 0.38 deleterious(0) unknown(0) TCGA-QK-AA3J-01 19 11151981 11151981 A G SMARCA4 Splice_Site p.X1391_splice 0.30 TCGA-QK-AA3J-01 19 2917737 2917747 TCACTTGGTCC - ZNF57 Frame_Shift_Del p.T374Nfs*3 0.38 TCGA-QK-AA3J-01 19 40581235 40581235 G C ZNF780A Missense_Mutation p.L373V 0.40 tolerated(0.5) benign(0.194) TCGA-QK-AA3J-01 19 41208550 41208551 - A ADCK4 Frame_Shift_Ins p.W283Lfs*4 0.26 TCGA-QK-AA3J-01 19 51295006 51295006 G A ACPT Missense_Mutation p.E133K 0.39 tolerated(0.1) probably_damaging(0.945) TCGA-QK-AA3J-01 19 5641793 5641793 A G SAFB Missense_Mutation p.I128V 0.36 tolerated(0.2) benign(0.075) TCGA-QK-AA3J-01 19 58301696 58301696 C T ZNF586 Missense_Mutation p.L31F 0.04 deleterious(0.02) probably_damaging(0.947) TCGA-QK-AA3J-01 19 58698313 58698313 G A ZNF274 Splice_Site p.X54_splice 0.26 TCGA-QK-AA3J-01 19 8553760 8553760 C T HNRNPM 3'UTR 0.35 TCGA-QK-AA3J-01 1 109801519 109801519 C G CELSR2 Missense_Mutation p.S1259C 0.39 tolerated(0.07) possibly_damaging(0.853) TCGA-QK-AA3J-01 1 152283460 152283460 T A FLG Missense_Mutation p.Q1301L 0.12 benign(0.069) TCGA-QK-AA3J-01 1 152283461 152283461 G T FLG Missense_Mutation p.Q1301K 0.12 benign(0.042) TCGA-QK-AA3J-01 1 15783637 15783637 G C CELA2A Missense_Mutation p.E33Q 0.34 tolerated(0.07) benign(0.111) TCGA-QK-AA3J-01 1 160968589 160968589 G A F11R 3'UTR 0.21 TCGA-QK-AA3J-01 1 180240395 180240395 C T LHX4 Intron 0.19 TCGA-QK-AA3J-01 1 215990498 215990498 A G USH2A Silent p.N3137N 0.24 TCGA-QK-AA3J-01 1 218607543 218607543 G C TGFB2 Missense_Mutation p.W238C 0.31 deleterious(0) probably_damaging(1) TCGA-QK-AA3J-01 1 236849947 236849947 C T ACTN2 5'UTR 0.16 TCGA-QK-AA3J-01 1 245027347 245027352 TCCTCC - HNRNPU In_Frame_Del p.E93_E94del 0.33 TCGA-QK-AA3J-01 1 27687322 27687322 T C MAP3K6 Missense_Mutation p.Y643C 0.38 deleterious(0) probably_damaging(0.997) TCGA-QK-AA3J-01 1 33237324 33237324 C T KIAA1522 Silent p.A848A 0.18 TCGA-QK-AA3J-01 1 55472843 55472843 G T BSND Missense_Mutation p.G149V 0.35 deleterious(0.01) probably_damaging(0.964) TCGA-QK-AA3J-01 1 66102765 66102765 T G LEPR 3'UTR 0.20 TCGA-QK-AA3J-01 1 67896006 67896006 C A SERBP1 5'UTR 0.35 TCGA-QK-AA3J-01 20 18297457 18297457 C T ZNF133 Silent p.L653L 0.08 TCGA-QK-AA3J-01 20 32162040 32162040 A G CBFA2T2 Missense_Mutation p.I12V 0.32 tolerated_low_confidence(0.59) benign(0.002) TCGA-QK-AA3J-01 20 42315638 42315638 G A MYBL2 Silent p.E142E 0.37 TCGA-QK-AA3J-01 20 52573993 52573993 T C BCAS1 Missense_Mutation p.N465S 0.43 tolerated(0.05) benign(0.095) TCGA-QK-AA3J-01 22 19188991 19188991 C T CLTCL1 Missense_Mutation p.C1205Y 0.31 deleterious(0) probably_damaging(1) TCGA-QK-AA3J-01 22 20819551 20819551 C T KLHL22 Missense_Mutation p.E236K 0.15 tolerated(0.38) possibly_damaging(0.566) TCGA-QK-AA3J-01 22 23115056 23115056 G A IGLV3-12 Missense_Mutation p.D110N 0.34 deleterious(0.01) possibly_damaging(0.85) TCGA-QK-AA3J-01 22 45959174 45959174 C T FBLN1 Intron 0.48 TCGA-QK-AA3J-01 2 11756807 11756807 C T GREB1 Missense_Mutation p.H1125Y 0.21 deleterious(0.02) benign(0.409) TCGA-QK-AA3J-01 2 167328885 167328885 A T SCN7A Missense_Mutation p.S172T 0.38 tolerated(0.12) possibly_damaging(0.609) TCGA-QK-AA3J-01 2 175201969 175201969 C G SP9 Missense_Mutation p.H386D 0.25 deleterious(0) possibly_damaging(0.803) TCGA-QK-AA3J-01 2 180309621 180309621 C A ZNF385B Silent p.R393R 0.21 TCGA-QK-AA3J-01 2 218683106 218683106 T A TNS1 Missense_Mutation p.S1213C 0.42 tolerated(0.13) possibly_damaging(0.678) TCGA-QK-AA3J-01 2 223169080 223169080 A G CCDC140 Silent p.K153K 0.53 TCGA-QK-AA3J-01 2 232325123 232325123 A C NCL Intron 0.31 TCGA-QK-AA3J-01 2 234627964 234627964 G A UGT1A4 Silent p.S166S 0.37 TCGA-QK-AA3J-01 2 238287526 238287526 G A COL6A3 Silent p.L750L 0.27 TCGA-QK-AA3J-01 2 26653720 26653720 C T DRC1 Nonsense_Mutation p.Q249* 0.18 TCGA-QK-AA3J-01 2 32517253 32517253 T A YIPF4 Missense_Mutation p.L81M 0.43 deleterious(0.01) possibly_damaging(0.906) TCGA-QK-AA3J-01 2 42556897 42556897 C T EML4 Silent p.A832A 0.07 TCGA-QK-AA3J-01 2 54093970 54093970 G A PSME4 Missense_Mutation p.L1771F 0.16 tolerated(0.06) probably_damaging(0.968) TCGA-QK-AA3J-01 2 55471317 55471317 G A MTIF2 Silent p.L387L 0.19 TCGA-QK-AA3J-01 2 70047948 70047948 A T ANXA4 Missense_Mutation p.I301F 0.58 deleterious(0) probably_damaging(1) TCGA-QK-AA3J-01 2 74274180 74274180 A T TET3 Missense_Mutation p.Q244L 0.61 tolerated(0.12) benign(0.047) TCGA-QK-AA3J-01 2 75117925 75117925 T - HK2 Frame_Shift_Del p.F871Lfs*9 0.39 TCGA-QK-AA3J-01 2 88387594 88387594 G C SMYD1 Silent p.V176V 0.35 TCGA-QK-AA3J-01 2 8958868 8958868 T C KIDINS220 Missense_Mutation p.K55R 0.38 tolerated(0.61) possibly_damaging(0.491) TCGA-QK-AA3J-01 3 127323763 127323763 G A MCM2 Missense_Mutation p.R146H 0.67 tolerated(0.1) possibly_damaging(0.875) TCGA-QK-AA3J-01 3 134322359 134322359 C G KY 3'UTR 0.26 TCGA-QK-AA3J-01 3 16646835 16646835 G C DAZL 5'Flank 0.14 TCGA-QK-AA3J-01 3 195712535 195712535 T A SDHAP1 RNA 0.13 TCGA-QK-AA3J-01 3 26751887 26751887 C G LRRC3B Missense_Mutation p.L242V 0.61 deleterious(0) probably_damaging(0.994) TCGA-QK-AA3J-01 3 31658513 31658513 G A STT3B Missense_Mutation p.V357I 0.60 tolerated(0.48) benign(0.013) TCGA-QK-AA3J-01 3 62204554 62204554 C T PTPRG Missense_Mutation p.R729C 0.61 deleterious(0.01) benign(0.386) TCGA-QK-AA3J-01 4 1018692 1018692 G A FGFRL1 Splice_Site p.X358_splice 0.62 TCGA-QK-AA3J-01 4 110442743 110442743 G A SEC24B Silent p.L823L 0.37 TCGA-QK-AA3J-01 4 151504541 151504541 G A MAB21L2 Silent p.S120S 0.39 TCGA-QK-AA3J-01 4 170634356 170634356 C G CLCN3 Missense_Mutation p.P759R 0.39 deleterious(0) probably_damaging(1) TCGA-QK-AA3J-01 4 177071286 177071286 C T WDR17 Nonsense_Mutation p.Q738* 0.31 TCGA-QK-AA3J-01 4 185593502 185593502 A G PRIMPOL Silent p.T244T 0.37 TCGA-QK-AA3J-01 4 96127854 96127854 C A UNC5C Missense_Mutation p.M609I 0.32 tolerated(0.78) benign(0.002) TCGA-QK-AA3J-01 4 96166139 96166139 G T UNC5C Missense_Mutation p.T311K 0.06 deleterious(0) possibly_damaging(0.863) TCGA-QK-AA3J-01 5 137621192 137621192 C T CDC25C 3'UTR 0.40 TCGA-QK-AA3J-01 5 140719127 140719127 G C PCDHGA2 Missense_Mutation p.E197Q 0.61 tolerated_low_confidence(0.16) possibly_damaging(0.558) TCGA-QK-AA3J-01 5 16703230 16703230 T C MYO10 Missense_Mutation p.I772V 0.31 tolerated(0.08) benign(0.052) TCGA-QK-AA3J-01 5 176637762 176637762 C T NSD1 Nonsense_Mutation p.R788* 0.72 TCGA-QK-AA3J-01 5 38463979 38463979 G C EGFLAM Missense_Mutation p.R982T 0.26 tolerated(0.28) possibly_damaging(0.456) TCGA-QK-AA3J-01 6 130467229 130467229 G A SAMD3 Missense_Mutation p.S374L 0.36 tolerated(0.48) benign(0.004) TCGA-QK-AA3J-01 6 160953644 160953644 G A LPA Silent p.L1960L 0.08 TCGA-QK-AA3J-01 6 27806787 27806787 C G HIST1H2BN Silent p.T116T 0.28 TCGA-QK-AA3J-01 6 28056881 28056881 G C ZNF165 Missense_Mutation p.R364T 0.36 deleterious(0) probably_damaging(0.922) TCGA-QK-AA3J-01 6 49986803 49986803 A G DEFB110 Silent p.L31L 0.28 TCGA-QK-AA3J-01 6 7845476 7845476 C A BMP6 Missense_Mutation p.F256L 0.75 tolerated(0.12) benign(0.137) TCGA-QK-AA3J-01 7 107698328 107698328 A G LAMB4 Missense_Mutation p.C1110R 0.10 deleterious(0) probably_damaging(0.978) TCGA-QK-AA3J-01 7 112579780 112579780 T C C7orf60 Missense_Mutation p.N9S 0.19 tolerated_low_confidence(0.85) benign(0) TCGA-QK-AA3J-01 7 140154946 140154946 G A MKRN1 Silent p.G395G 0.53 TCGA-QK-AA3J-01 7 66418288 66418288 T C TMEM248 Missense_Mutation p.C286R 0.26 deleterious(0) probably_damaging(0.999) TCGA-QK-AA3J-01 7 82785327 82785327 A G PCLO Silent p.P210P 0.24 TCGA-QK-AA3J-01 7 87072646 87072646 C T ABCB4 Missense_Mutation p.D449N 0.22 tolerated(0.44) benign(0.013) TCGA-QK-AA3J-01 7 87144634 87144634 C T ABCB1 Silent p.T1065T 0.76 TCGA-QK-AA3J-01 7 89866176 89866176 G A STEAP2 3'UTR 0.15 TCGA-QK-AA3J-01 7 92762885 92762885 G T SAMD9L Silent p.L800L 0.19 TCGA-QK-AA3J-01 7 94038704 94038704 C G COL1A2 Missense_Mutation p.P288R 0.21 unknown(0) TCGA-QK-AA3J-01 7 97823045 97823045 G C LMTK2 Missense_Mutation p.E1090Q 0.29 tolerated(1) benign(0.001) TCGA-QK-AA3J-01 7 98592366 98592366 G A TRRAP Missense_Mutation p.V3388I 0.04 benign(0.079) TCGA-QK-AA3J-01 7 99818176 99818176 C G PVRIG Missense_Mutation p.S159C 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-QK-AA3J-01 8 125580508 125580508 T C MTSS1 Intron 0.38 TCGA-QK-AA3J-01 8 30924659 30924659 C A WRN Silent p.L205L 0.66 TCGA-QK-AA3J-01 8 38067700 38067700 C T BAG4 Missense_Mutation p.H355Y 0.52 deleterious(0.04) benign(0.222) TCGA-QK-AA3J-01 8 92030633 92030633 A G TMEM55A Silent p.C157C 0.32 TCGA-QK-AA3J-01 9 120475583 120475583 C G TLR4 Missense_Mutation p.Q393E 0.27 tolerated(0.32) benign(0.003) TCGA-QK-AA3J-01 9 123782264 123782264 T C C5 Missense_Mutation p.Y499C 0.42 deleterious(0) probably_damaging(0.996) TCGA-QK-AA3J-01 9 138660749 138660749 C G KCNT1 Silent p.L492L 0.47 TCGA-QK-AA3J-01 9 138660773 138660773 C G KCNT1 Silent p.V500V 0.43 TCGA-QK-AA3J-01 9 20867006 20867006 G A FOCAD Missense_Mutation p.E729K 0.59 deleterious(0) possibly_damaging(0.886) TCGA-QK-AA3J-01 9 20978364 20978364 G C FOCAD Missense_Mutation p.E1430Q 0.52 tolerated(0.54) benign(0.04) TCGA-QK-AA3J-01 9 21239322 21239322 G A IFNA14 3'UTR 0.53 TCGA-QK-AA3J-01 9 71606093 71606093 G A PIP5K1B Missense_Mutation p.E514K 0.29 deleterious_low_confidence(0.01) benign(0.016) TCGA-QK-AA3J-01 X 151821393 151821393 G A GABRQ Silent p.G516G 0.70 TCGA-QK-AA3J-01 X 151900443 151900443 G C MAGEA12 Missense_Mutation p.L120V 0.74 deleterious(0) probably_damaging(0.958) TCGA-QK-AA3J-01 X 54265389 54265389 G A WNK3 Silent p.S1265S 0.72 TCGA-QK-AA3K-01 10 124697528 124697528 C T C10orf88 Missense_Mutation p.G266R 0.16 tolerated(0.09) possibly_damaging(0.663) TCGA-QK-AA3K-01 10 128822972 128822972 T C DOCK1 Silent p.G471G 0.22 TCGA-QK-AA3K-01 10 18931445 18931445 C G RP11-139J15.7 Missense_Mutation p.D79H 0.25 tolerated(0.09) possibly_damaging(0.788) TCGA-QK-AA3K-01 10 64136451 64136451 C T ZNF365 Nonsense_Mutation p.R167* 0.23 TCGA-QK-AA3K-01 10 97916721 97916721 C T ZNF518A RNA 0.14 TCGA-QK-AA3K-01 11 22242681 22242681 C T ANO5 Silent p.F73F 0.53 TCGA-QK-AA3K-01 11 2946328 2946328 C T SLC22A18 Silent p.G392G 0.12 TCGA-QK-AA3K-01 11 61113862 61113862 G A DAK Missense_Mutation p.A539T 0.20 deleterious(0) probably_damaging(1) TCGA-QK-AA3K-01 11 62564003 62564003 C A NXF1 Silent p.G405G 0.16 TCGA-QK-AA3K-01 11 62747261 62747261 C T SLC22A6 Missense_Mutation p.M399I 0.07 tolerated(0.05) benign(0.005) TCGA-QK-AA3K-01 11 65172435 65172435 C T FRMD8 Missense_Mutation p.P391L 0.17 tolerated(0.12) benign(0.133) TCGA-QK-AA3K-01 11 65339025 65339025 T G SSSCA1 Silent p.A140A 0.22 TCGA-QK-AA3K-01 11 67939092 67939092 T A SUV420H1 Silent p.G246G 0.31 TCGA-QK-AA3K-01 12 109604671 109604671 G - ACACB Frame_Shift_Del p.S220Tfs*8 0.32 TCGA-QK-AA3K-01 12 109927763 109927763 A G UBE3B Missense_Mutation p.N195S 0.45 tolerated(0.1) benign(0.189) TCGA-QK-AA3K-01 12 111885008 111885008 G C SH2B3 Missense_Mutation p.D336H 0.45 deleterious(0) probably_damaging(0.914) TCGA-QK-AA3K-01 12 121176080 121176080 C T ACADS Intron 0.17 TCGA-QK-AA3K-01 12 42745769 42745769 A T PPHLN1 Missense_Mutation p.Y52F 0.54 deleterious(0.04) probably_damaging(0.91) TCGA-QK-AA3K-01 12 49436343 49436343 C T KMT2D Splice_Site p.X1956_splice 0.48 TCGA-QK-AA3K-01 12 56980705 56980705 C A RBMS2 Missense_Mutation p.P316T 0.17 deleterious(0.02) benign(0.203) TCGA-QK-AA3K-01 12 94072588 94072588 G A CRADD Missense_Mutation p.R13H 0.51 deleterious(0.02) probably_damaging(1) TCGA-QK-AA3K-01 13 99017671 99017671 C T FARP1 Missense_Mutation p.P100L 0.32 deleterious(0.04) possibly_damaging(0.897) TCGA-QK-AA3K-01 14 105413228 105413228 C A AHNAK2 Missense_Mutation p.G2854W 0.10 probably_damaging(0.996) TCGA-QK-AA3K-01 14 53003496 53003496 G A TXNDC16 Silent p.L111L 0.20 TCGA-QK-AA3K-01 14 57689025 57689025 C G EXOC5 Splice_Site p.X469_splice 0.29 TCGA-QK-AA3K-01 14 57689026 57689026 C A EXOC5 Nonsense_Mutation p.G469* 0.33 TCGA-QK-AA3K-01 14 64935239 64935239 G A AKAP5 Missense_Mutation p.A43T 0.29 tolerated(0.35) benign(0.007) TCGA-QK-AA3K-01 14 64935240 64935240 C A AKAP5 Missense_Mutation p.A43E 0.28 deleterious(0.01) benign(0.231) TCGA-QK-AA3K-01 14 69704454 69704454 C T EXD2 Silent p.I485I 0.20 TCGA-QK-AA3K-01 15 31233736 31233736 T A MTMR10 Missense_Mutation p.L757F 0.38 deleterious(0.02) benign(0.021) TCGA-QK-AA3K-01 15 34105109 34105109 G A RYR3 Missense_Mutation p.V3435I 0.23 benign(0.001) TCGA-QK-AA3K-01 15 34105144 34105144 G T RYR3 Missense_Mutation p.K3446N 0.16 benign(0.005) TCGA-QK-AA3K-01 15 54306941 54306941 A T UNC13C Missense_Mutation p.Q614L 0.16 tolerated_low_confidence(0.14) benign(0) TCGA-QK-AA3K-01 15 72461335 72461335 A - GRAMD2 Frame_Shift_Del p.L46Rfs*7 0.23 TCGA-QK-AA3K-01 15 77473569 77473569 C T PEAK1 Missense_Mutation p.E234K 0.15 tolerated(0.11) benign(0.154) TCGA-QK-AA3K-01 16 11009437 11009437 G C CIITA Missense_Mutation p.V967L 0.38 deleterious(0.02) benign(0.007) TCGA-QK-AA3K-01 16 28331784 28331784 C T SBK1 Missense_Mutation p.R273C 0.26 deleterious(0.01) benign(0.233) TCGA-QK-AA3K-01 16 29827937 29827937 C T PAGR1 Silent p.L31L 0.27 TCGA-QK-AA3K-01 16 4944525 4944525 G A PPL Missense_Mutation p.P446L 0.06 deleterious(0) probably_damaging(1) TCGA-QK-AA3K-01 16 58610459 58610459 T C CNOT1 Missense_Mutation p.I538V 0.14 tolerated(0.17) benign(0.038) TCGA-QK-AA3K-01 16 69971036 69971036 G A WWP2 Nonsense_Mutation p.W711* 0.26 TCGA-QK-AA3K-01 17 10404628 10404628 G A MYH1 Silent p.R1179R 0.12 TCGA-QK-AA3K-01 17 11572384 11572384 G A DNAH9 Missense_Mutation p.C912Y 0.14 benign(0) TCGA-QK-AA3K-01 17 12916587 12916587 G A ELAC2 Missense_Mutation p.R166W 0.10 deleterious(0) probably_damaging(0.997) TCGA-QK-AA3K-01 17 17127338 17127338 G A FLCN Silent p.I172I 0.45 TCGA-QK-AA3K-01 17 17701398 17701398 C - RAI1 Frame_Shift_Del p.K1715Rfs*135 0.20 TCGA-QK-AA3K-01 17 33690462 33690462 T A SLFN11 Missense_Mutation p.K122M 0.11 tolerated(0.05) benign(0.399) TCGA-QK-AA3K-01 17 35614739 35614739 T - ACACA Frame_Shift_Del p.N571Ifs*45 0.14 TCGA-QK-AA3K-01 17 40376881 40376881 C T STAT5B Silent p.T97T 0.09 TCGA-QK-AA3K-01 17 67124901 67124901 G A ABCA6 Silent p.V326V 0.16 TCGA-QK-AA3K-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.41 deleterious(0.04) possibly_damaging(0.898) TCGA-QK-AA3K-01 17 78111189 78111189 C T EIF4A3 Missense_Mutation p.A327T 0.20 tolerated(0.17) benign(0.002) TCGA-QK-AA3K-01 17 79667832 79667832 T C HGS Silent p.P708P 0.16 TCGA-QK-AA3K-01 17 80196938 80196938 G A SLC16A3 3'UTR 0.17 TCGA-QK-AA3K-01 19 20728017 20728017 T C ZNF737 Missense_Mutation p.H331R 0.40 deleterious(0.01) probably_damaging(1) TCGA-QK-AA3K-01 19 32873418 32873418 G A ZNF507 Silent p.K802K 0.17 TCGA-QK-AA3K-01 19 54696135 54696136 - GCTA TSEN34 Frame_Shift_Ins p.R220Lfs*25 0.29 TCGA-QK-AA3K-01 19 55707926 55707926 C T PTPRH Missense_Mutation p.V741M 0.21 benign(0.335) TCGA-QK-AA3K-01 19 55713658 55713658 C A PTPRH Missense_Mutation p.A307S 0.13 benign(0.241) TCGA-QK-AA3K-01 19 58571363 58571363 G T ZNF135 Intron 0.30 TCGA-QK-AA3K-01 19 58571364 58571364 C A ZNF135 Intron 0.31 TCGA-QK-AA3K-01 19 59068489 59068489 T C UBE2M Missense_Mutation p.I49V 0.25 tolerated(0.41) benign(0.003) TCGA-QK-AA3K-01 19 9077090 9077090 G T MUC16 Silent p.I3452I 0.21 TCGA-QK-AA3K-01 1 109884667 109884667 G T SORT1 Missense_Mutation p.D359E 0.19 tolerated(0.14) benign(0.01) TCGA-QK-AA3K-01 1 1275150 1275150 C T DVL1 Missense_Mutation p.V318M 0.24 deleterious(0.01) benign(0.045) TCGA-QK-AA3K-01 1 144952184 144952184 G T PDE4DIP Intron 0.07 TCGA-QK-AA3K-01 1 158746644 158746644 C T OR6N2 Missense_Mutation p.R261Q 0.23 deleterious(0.02) possibly_damaging(0.73) TCGA-QK-AA3K-01 1 172113721 172113721 G A DNM3 Intron 0.08 TCGA-QK-AA3K-01 1 176838147 176838147 G C ASTN1 Missense_Mutation p.I1160M 0.09 deleterious(0) probably_damaging(0.978) TCGA-QK-AA3K-01 1 200843200 200843200 C T GPR25 Silent p.S345S 0.25 TCGA-QK-AA3K-01 1 220364615 220364615 C T RAB3GAP2 Missense_Mutation p.A428T 0.22 deleterious(0) probably_damaging(1) TCGA-QK-AA3K-01 1 229588313 229588313 G T NUP133 Missense_Mutation p.L1020I 0.22 tolerated(0.4) probably_damaging(0.973) TCGA-QK-AA3K-01 1 230933952 230933952 C G CAPN9 Missense_Mutation p.L678V 0.22 deleterious(0.01) benign(0.322) TCGA-QK-AA3K-01 1 248636768 248636768 T A OR2T3 Silent p.L39L 0.17 TCGA-QK-AA3K-01 1 6648389 6648389 G A ZBTB48 Missense_Mutation p.C523Y 0.22 deleterious(0) possibly_damaging(0.815) TCGA-QK-AA3K-01 1 71536551 71536551 T C ZRANB2 Silent p.S214S 0.25 TCGA-QK-AA3K-01 1 90470707 90470707 A G ZNF326 Missense_Mutation p.Y38C 0.24 deleterious(0) probably_damaging(0.99) TCGA-QK-AA3K-01 20 2634913 2634913 G T NOP56 Intron 0.45 TCGA-QK-AA3K-01 20 44586291 44586291 C T ZNF335 Silent p.T792T 0.22 TCGA-QK-AA3K-01 2 109336030 109336030 C T RANBP2 5'UTR 0.23 TCGA-QK-AA3K-01 2 11053622 11053622 T A KCNF1 Missense_Mutation p.I357N 0.22 deleterious(0) probably_damaging(1) TCGA-QK-AA3K-01 2 170672002 170672002 T C METTL5 Missense_Mutation p.I176V 0.12 tolerated(0.44) benign(0.001) TCGA-QK-AA3K-01 2 182389978 182389978 G C ITGA4 Missense_Mutation p.A767P 0.12 tolerated(0.1) benign(0.023) TCGA-QK-AA3K-01 2 240984729 240984729 G A OR6B3 Missense_Mutation p.A254V 0.27 deleterious(0.03) probably_damaging(0.986) TCGA-QK-AA3K-01 2 241570340 241570340 C A GPR35 3'UTR 0.15 TCGA-QK-AA3K-01 2 95846874 95846874 G T ZNF2 Missense_Mutation p.D101Y 0.18 deleterious(0.03) possibly_damaging(0.762) TCGA-QK-AA3K-01 2 97757327 97757327 C T FAHD2B Silent p.G39G 0.17 TCGA-QK-AA3K-01 2 98355914 98355914 G C ZAP70 Missense_Mutation p.E605Q 0.08 tolerated_low_confidence(0.05) benign(0.002) TCGA-QK-AA3K-01 3 160155772 160155772 T A TRIM59 Silent p.I400I 0.08 TCGA-QK-AA3K-01 3 164704923 164704923 C A SI Intron 0.23 TCGA-QK-AA3K-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.23 tolerated(0.11) possibly_damaging(0.529) TCGA-QK-AA3K-01 3 197751536 197751536 T A LMLN Missense_Mutation p.F548L 0.14 tolerated(0.73) benign(0.002) TCGA-QK-AA3K-01 3 42788812 42788812 C G CCDC13 Missense_Mutation p.L219F 0.19 tolerated(0.31) probably_damaging(0.989) TCGA-QK-AA3K-01 3 62188867 62188867 T C PTPRG Silent p.S466S 0.19 TCGA-QK-AA3K-01 3 9911929 9911929 T C CIDEC Silent p.E105E 0.08 TCGA-QK-AA3K-01 4 146697081 146697081 G A ZNF827 Silent p.P851P 0.48 TCGA-QK-AA3K-01 4 164394587 164394587 G T TKTL2 Missense_Mutation p.N100K 0.50 tolerated(0.15) benign(0.027) TCGA-QK-AA3K-01 4 164466832 164466832 C T MARCH1 Missense_Mutation p.V163I 0.09 tolerated(0.64) benign(0.002) TCGA-QK-AA3K-01 4 78740437 78740437 G C CNOT6L Intron 0.22 TCGA-QK-AA3K-01 4 89574019 89574019 G C HERC3 Splice_Site p.X155_splice 0.27 TCGA-QK-AA3K-01 5 13700787 13700787 T C DNAH5 Missense_Mutation p.E4562G 0.15 possibly_damaging(0.728) TCGA-QK-AA3K-01 5 137801607 137801607 G C EGR1 Missense_Mutation p.G53R 0.27 deleterious_low_confidence(0) unknown(0) TCGA-QK-AA3K-01 5 140262811 140262811 G A PCDHA13 Missense_Mutation p.V320M 0.21 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-QK-AA3K-01 5 31983584 31983585 AA - PDZD2 Frame_Shift_Del p.N268Wfs*25 0.18 TCGA-QK-AA3K-01 5 72384004 72384004 A G FCHO2 3'UTR 0.50 TCGA-QK-AA3K-01 6 160481709 160481709 G T IGF2R Silent p.A1074A 0.28 TCGA-QK-AA3K-01 6 29589031 29589031 C T GABBR1 Nonsense_Mutation p.W390* 0.21 TCGA-QK-AA3K-01 6 32064720 32064720 C T TNXB Missense_Mutation p.E304K 0.16 probably_damaging(0.956) TCGA-QK-AA3K-01 6 7230136 7230136 A G RREB1 Missense_Mutation p.I602V 0.27 tolerated(0.22) possibly_damaging(0.452) TCGA-QK-AA3K-01 7 108204880 108204880 T C THAP5 Missense_Mutation p.T315A 0.22 tolerated(0.48) benign(0.001) TCGA-QK-AA3K-01 7 23792352 23792352 C T STK31 Missense_Mutation p.A345V 0.16 tolerated(0.46) benign(0.028) TCGA-QK-AA3K-01 7 38388991 38388991 C T TRGV5 Missense_Mutation p.D107N 0.58 deleterious(0) probably_damaging(1) TCGA-QK-AA3K-01 7 5778919 5778919 T C RNF216 Missense_Mutation p.Y370C 0.46 tolerated(0.17) probably_damaging(0.999) TCGA-QK-AA3K-01 7 76071253 76071253 C T ZP3 Silent p.T385T 0.30 TCGA-QK-AA3K-01 7 91714839 91714839 A T AKAP9 Missense_Mutation p.M2955L 0.23 benign(0.284) TCGA-QK-AA3K-01 8 38146050 38146050 C T WHSC1L1 Silent p.T1152T 0.17 TCGA-QK-AA3K-01 9 125239841 125239841 C T OR1J1 Missense_Mutation p.R122K 0.05 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-QK-AA3K-01 9 134019932 134019932 C A NUP214 Missense_Mutation p.F520L 0.56 benign(0.294) TCGA-QK-AA3K-01 9 134514093 134514093 C T RAPGEF1 Missense_Mutation p.V195M 0.18 deleterious(0.04) probably_damaging(0.918) TCGA-QK-AA3K-01 9 139412252 139412252 C T NOTCH1 Missense_Mutation p.A465T 0.56 deleterious(0) probably_damaging(0.957) TCGA-QK-AA3K-01 9 22447696 22447696 A C DMRTA1 Missense_Mutation p.E211A 0.41 deleterious(0.04) benign(0.014) TCGA-QK-AA3K-01 9 32436283 32436283 G A ACO1 Missense_Mutation p.R712H 0.24 deleterious(0.01) probably_damaging(1) TCGA-QK-AA3K-01 9 34637446 34637446 A T SIGMAR1 Intron 0.30 TCGA-QK-AA3K-01 9 75431091 75431091 C T TMC1 Silent p.N576N 0.21 TCGA-QK-AA3K-01 9 8499758 8499758 G - PTPRD Frame_Shift_Del p.N738Ifs*7 0.44 TCGA-QK-AA3K-01 X 135570640 135570640 C T BRS3 Missense_Mutation p.L123F 0.41 deleterious(0.01) probably_damaging(0.988) TCGA-QK-AA3K-01 X 91132925 91132925 T G PCDH11X Missense_Mutation p.D562E 0.42 deleterious(0) probably_damaging(0.999) TCGA-RS-A6TO-01 10 101474348 101474348 T G COX15 Missense_Mutation p.K410T 0.13 deleterious(0) probably_damaging(0.986) TCGA-RS-A6TO-01 10 106960935 106960935 C T SORCS3 Nonsense_Mutation p.Q729* 0.18 TCGA-RS-A6TO-01 10 11531113 11531113 G T USP6NL Missense_Mutation p.H235N 0.16 deleterious(0) probably_damaging(0.956) TCGA-RS-A6TO-01 10 115536953 115536953 A G PLEKHS1 Missense_Mutation p.N368D 0.15 deleterious(0) probably_damaging(1) TCGA-RS-A6TO-01 10 119303089 119303089 C T EMX2 Missense_Mutation p.S104L 0.08 tolerated(0.66) benign(0) TCGA-RS-A6TO-01 10 127782640 127782640 G A ADAM12 Silent p.F356F 0.20 TCGA-RS-A6TO-01 10 129046280 129046280 C T DOCK1 Silent p.F931F 0.19 TCGA-RS-A6TO-01 10 14891737 14891737 T C HSPA14 Silent p.L132L 0.14 TCGA-RS-A6TO-01 10 16526539 16526539 C T PTER Silent p.I52I 0.07 TCGA-RS-A6TO-01 10 64573000 64573000 G A EGR2 Silent p.L466L 0.20 TCGA-RS-A6TO-01 10 70098948 70098948 A T HNRNPH3 Missense_Mutation p.N163I 0.19 tolerated(0.13) benign(0.002) TCGA-RS-A6TO-01 10 85997337 85997337 G T LRIT1 Silent p.G76G 0.20 TCGA-RS-A6TO-01 10 95458092 95458092 C T FRA10AC1 Missense_Mutation p.A47T 0.26 tolerated(0.32) benign(0.015) TCGA-RS-A6TO-01 11 101833080 101833080 G C KIAA1377 Missense_Mutation p.E438D 0.06 tolerated(0.24) possibly_damaging(0.574) TCGA-RS-A6TO-01 11 111784374 111784374 C T HSPB2 Missense_Mutation p.R102W 0.13 deleterious(0) probably_damaging(0.981) TCGA-RS-A6TO-01 11 113857259 113857259 C G HTR3A Missense_Mutation p.P248R 0.16 deleterious(0) probably_damaging(0.998) TCGA-RS-A6TO-01 11 120979946 120979946 C G TECTA Missense_Mutation p.F75L 0.11 deleterious(0) probably_damaging(0.989) TCGA-RS-A6TO-01 11 3028178 3028178 G A CARS Silent p.L694L 0.05 TCGA-RS-A6TO-01 11 47399866 47399866 G T SPI1 Silent p.V13V 0.22 TCGA-RS-A6TO-01 11 49208288 49208288 C T FOLH1 Missense_Mutation p.E183K 0.10 deleterious(0.02) benign(0.05) TCGA-RS-A6TO-01 11 5255647 5255647 G C HBD Missense_Mutation p.P6R 0.22 tolerated(0.32) benign(0.055) TCGA-RS-A6TO-01 11 5655105 5655105 C A TRIM34 Silent p.I165I 0.11 TCGA-RS-A6TO-01 11 61254049 61254049 C T PPP1R32 Silent p.F267F 0.21 TCGA-RS-A6TO-01 11 65124617 65124617 A G TIGD3 Silent p.E446E 0.37 TCGA-RS-A6TO-01 11 66335131 66335131 G C CTSF Silent p.L105L 0.13 TCGA-RS-A6TO-01 11 66625772 66625772 C T LRFN4 Missense_Mutation p.P186L 0.19 deleterious(0.03) benign(0.272) TCGA-RS-A6TO-01 11 74168573 74168573 C T KCNE3 Silent p.E12E 0.14 TCGA-RS-A6TO-01 11 75277979 75277979 G A SERPINH1 Silent p.T195T 0.14 TCGA-RS-A6TO-01 11 9455312 9455312 C T IPO7 Nonsense_Mutation p.Q665* 0.19 TCGA-RS-A6TO-01 12 106740092 106740092 G T TCP11L2 Missense_Mutation p.R448S 0.25 tolerated(1) benign(0) TCGA-RS-A6TO-01 12 120541715 120541715 G A RAB35 Missense_Mutation p.R48W 0.45 deleterious(0) probably_damaging(0.999) TCGA-RS-A6TO-01 12 123070213 123070213 G A KNTC1 Missense_Mutation p.E1189K 0.16 tolerated(0.09) benign(0.002) TCGA-RS-A6TO-01 12 126139323 126139323 G T TMEM132B 3'UTR 0.10 TCGA-RS-A6TO-01 12 13716095 13716095 G A GRIN2B Silent p.A1359A 0.45 TCGA-RS-A6TO-01 12 49445325 49445325 G A KMT2D Missense_Mutation p.S714L 0.16 unknown(0) TCGA-RS-A6TO-01 12 49994396 49994396 C G FAM186B Missense_Mutation p.E343Q 0.10 tolerated(0.2) benign(0.276) TCGA-RS-A6TO-01 12 53044254 53044254 G T KRT2 Silent p.I223I 0.10 TCGA-RS-A6TO-01 12 56993130 56993130 C T BAZ2A Missense_Mutation p.E1731K 0.12 deleterious(0.04) benign(0.024) TCGA-RS-A6TO-01 12 57868256 57868256 C T ARHGAP9 Missense_Mutation p.R578H 0.31 deleterious(0) probably_damaging(0.999) TCGA-RS-A6TO-01 12 67692788 67692788 C G CAND1 Missense_Mutation p.L305V 0.10 tolerated(0.21) benign(0.027) TCGA-RS-A6TO-01 12 91497912 91497912 A G LUM 3'UTR 0.09 TCGA-RS-A6TO-01 12 99640583 99640583 C A ANKS1B Missense_Mutation p.A606S 0.04 tolerated(0.95) benign(0.223) TCGA-RS-A6TO-01 13 35733561 35733561 G C NBEA Missense_Mutation p.E1085Q 0.40 tolerated_low_confidence(0.11) benign(0.004) TCGA-RS-A6TO-01 13 44455407 44455407 G A LACC1 Missense_Mutation p.D96N 0.05 deleterious(0) probably_damaging(1) TCGA-RS-A6TO-01 13 50062507 50062507 G C SETDB2 Missense_Mutation p.R565T 0.16 deleterious(0.01) possibly_damaging(0.597) TCGA-RS-A6TO-01 13 61986443 61986443 G A PCDH20 Silent p.L597L 0.28 TCGA-RS-A6TO-01 14 104026872 104026872 A C BAG5 Missense_Mutation p.N251K 0.28 tolerated_low_confidence(0.85) benign(0.006) TCGA-RS-A6TO-01 14 105420866 105420866 G A AHNAK2 Missense_Mutation p.R308C 0.39 possibly_damaging(0.784) TCGA-RS-A6TO-01 14 105848855 105848855 C G PACS2 Silent p.L485L 0.16 TCGA-RS-A6TO-01 14 106878021 106878021 G T IGHV4-39 Missense_Mutation p.A19E 0.21 deleterious(0.04) benign(0.402) TCGA-RS-A6TO-01 14 23393710 23393710 C G PRMT5 Missense_Mutation p.E352Q 0.09 tolerated(0.11) possibly_damaging(0.486) TCGA-RS-A6TO-01 14 52978086 52978086 G A TXNDC16 Missense_Mutation p.H210Y 0.17 deleterious(0.04) benign(0.058) TCGA-RS-A6TO-01 14 88429779 88429779 G A GALC Silent p.Y370Y 0.33 TCGA-RS-A6TO-01 15 45410062 45410062 G A DUOXA2 Silent p.K306K 0.20 TCGA-RS-A6TO-01 15 51294782 51294782 C G AP4E1 Missense_Mutation p.L1113V 0.23 tolerated(0.53) benign(0.252) TCGA-RS-A6TO-01 15 52659265 52659265 G C MYO5A Silent p.L1041L 0.19 TCGA-RS-A6TO-01 15 74741683 74741683 G A UBL7 Silent p.S242S 0.14 TCGA-RS-A6TO-01 16 11868313 11868313 G A ZC3H7A Missense_Mutation p.H228Y 0.16 deleterious(0.04) benign(0.001) TCGA-RS-A6TO-01 16 18866198 18866198 G T SMG1 Silent p.L1421L 0.11 TCGA-RS-A6TO-01 16 216068 216068 C T HBM Silent p.F24F 0.41 TCGA-RS-A6TO-01 16 31282333 31282333 C T ITGAM Silent p.I162I 0.13 TCGA-RS-A6TO-01 16 347826 347826 G A AXIN1 Silent p.S560S 0.19 TCGA-RS-A6TO-01 16 3779447 3779447 C T CREBBP Silent p.R1867R 0.15 TCGA-RS-A6TO-01 16 3900963 3900963 T C CREBBP Missense_Mutation p.I45V 0.16 probably_damaging(0.995) TCGA-RS-A6TO-01 16 57104531 57104531 G A NLRC5 Splice_Site p.X1556_splice 0.42 TCGA-RS-A6TO-01 16 57238645 57238645 G T RSPRY1 Missense_Mutation p.E25D 0.07 tolerated_low_confidence(0.32) benign(0.006) TCGA-RS-A6TO-01 16 69833085 69833085 C T WWP2 Missense_Mutation p.T76M 0.14 deleterious(0) probably_damaging(0.997) TCGA-RS-A6TO-01 17 11845708 11845708 C T DNAH9 Missense_Mutation p.P4250L 0.18 probably_damaging(1) TCGA-RS-A6TO-01 17 1792040 1792040 G A RPA1 Silent p.P482P 0.13 TCGA-RS-A6TO-01 17 40453383 40453383 G A STAT5A Silent p.L360L 0.10 TCGA-RS-A6TO-01 17 40453429 40453429 G A STAT5A Missense_Mutation p.E376K 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-RS-A6TO-01 17 42019013 42019013 C T PPY Missense_Mutation p.A4T 0.17 tolerated(0.52) unknown(0) TCGA-RS-A6TO-01 17 42293957 42293957 T C UBTF Silent p.V58V 0.38 TCGA-RS-A6TO-01 17 42477204 42477204 C T GPATCH8 Silent p.R747R 0.08 TCGA-RS-A6TO-01 17 48619236 48619236 C T EPN3 Silent p.F539F 0.11 TCGA-RS-A6TO-01 17 61895778 61895778 G T DDX42 3'UTR 0.08 TCGA-RS-A6TO-01 17 65026756 65026756 T C CACNG4 Missense_Mutation p.I207T 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-RS-A6TO-01 17 6684174 6684174 G A FBXO39 Silent p.L329L 0.17 TCGA-RS-A6TO-01 17 75201375 75201375 A C SEC14L1 Missense_Mutation p.E372D 0.13 deleterious(0) probably_damaging(0.931) TCGA-RS-A6TO-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.20 deleterious(0) probably_damaging(0.997) TCGA-RS-A6TO-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.33 TCGA-RS-A6TO-01 17 76798577 76798577 C T USP36 Missense_Mutation p.E951K 0.20 tolerated(0.25) benign(0.39) TCGA-RS-A6TO-01 17 8526300 8526300 C T MYH10 Missense_Mutation p.D89N 0.21 probably_damaging(0.997) TCGA-RS-A6TO-01 18 2688459 2688459 G T SMCHD1 Missense_Mutation p.G236C 0.08 deleterious(0) probably_damaging(1) TCGA-RS-A6TO-01 19 10657529 10657529 G A ATG4D Missense_Mutation p.E170K 0.48 tolerated(0.08) benign(0.006) TCGA-RS-A6TO-01 19 37677976 37677976 C G ZNF585B Missense_Mutation p.E155Q 0.03 deleterious(0.03) possibly_damaging(0.639) TCGA-RS-A6TO-01 19 42341178 42341178 G C LYPD4 3'UTR 0.32 TCGA-RS-A6TO-01 19 45655798 45655798 C T NKPD1 Missense_Mutation p.V633M 0.11 deleterious(0.03) benign(0.161) TCGA-RS-A6TO-01 19 48374696 48374696 C G SULT2A1 3'UTR 0.13 TCGA-RS-A6TO-01 19 53669307 53669307 G C ZNF665 Missense_Mutation p.Q146E 0.14 tolerated(0.06) benign(0.006) TCGA-RS-A6TO-01 19 55249987 55249987 C A KIR2DL3 5'UTR 0.16 TCGA-RS-A6TO-01 19 9058944 9058944 G T MUC16 Missense_Mutation p.A9501D 0.16 unknown(0) TCGA-RS-A6TO-01 1 103428220 103428220 C A COL11A1 Nonsense_Mutation p.E1005* 0.20 TCGA-RS-A6TO-01 1 1262674 1262674 C A GLTPD1 Missense_Mutation p.S59Y 0.21 deleterious(0) possibly_damaging(0.764) TCGA-RS-A6TO-01 1 146639425 146639425 G A PRKAB2 Missense_Mutation p.R82C 0.19 deleterious(0) probably_damaging(0.996) TCGA-RS-A6TO-01 1 149857978 149857978 G C HIST2H2BE Missense_Mutation p.F71L 0.13 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-RS-A6TO-01 1 157767980 157767980 G A FCRL1 Missense_Mutation p.P362L 0.15 tolerated(0.16) benign(0.035) TCGA-RS-A6TO-01 1 202104633 202104633 G A ARL8A Nonsense_Mutation p.R132* 0.12 TCGA-RS-A6TO-01 1 203668809 203668809 G A ATP2B4 Missense_Mutation p.E205K 0.35 deleterious(0.04) possibly_damaging(0.492) TCGA-RS-A6TO-01 1 204957855 204957855 C T NFASC Silent p.Y896Y 0.21 TCGA-RS-A6TO-01 1 205240255 205240255 C A TMCC2 Silent p.R564R 0.29 TCGA-RS-A6TO-01 1 22332274 22332274 C T CELA3A Missense_Mutation p.S116L 0.13 tolerated(0.52) benign(0.009) TCGA-RS-A6TO-01 1 247587769 247587769 C A NLRP3 Missense_Mutation p.P342T 0.38 deleterious(0.01) probably_damaging(1) TCGA-RS-A6TO-01 1 248129523 248129523 C T OR2AK2 Missense_Mutation p.T297I 0.34 deleterious(0.03) possibly_damaging(0.458) TCGA-RS-A6TO-01 1 44595051 44595051 G C KLF17 Missense_Mutation p.L36F 0.38 deleterious(0.04) probably_damaging(0.955) TCGA-RS-A6TO-01 1 52281999 52281999 G C NRD1 Missense_Mutation p.S543C 0.12 deleterious(0) probably_damaging(0.996) TCGA-RS-A6TO-01 1 57480832 57480832 C T DAB1 Missense_Mutation p.V390I 0.18 tolerated(0.16) benign(0.005) TCGA-RS-A6TO-01 1 76282183 76282183 C T MSH4 Missense_Mutation p.S314L 0.28 tolerated(0.23) benign(0.241) TCGA-RS-A6TO-01 20 13747568 13747568 C A ESF1 Nonsense_Mutation p.E508* 0.27 TCGA-RS-A6TO-01 20 30898675 30898675 C G KIF3B Silent p.L365L 0.09 TCGA-RS-A6TO-01 20 31897609 31897609 C T BPIFB1 3'UTR 0.39 TCGA-RS-A6TO-01 20 5948594 5948594 G C MCM8 Missense_Mutation p.L382F 0.11 tolerated(0.51) benign(0.003) TCGA-RS-A6TO-01 21 47660846 47660846 C T MCM3AP Missense_Mutation p.E1838K 0.16 tolerated(0.77) benign(0.004) TCGA-RS-A6TO-01 22 21984245 21984245 C G YDJC Missense_Mutation p.R20P 0.20 tolerated(0.07) benign(0.099) TCGA-RS-A6TO-01 22 30405007 30405007 A G MTMR3 Missense_Mutation p.E337G 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-RS-A6TO-01 22 32651253 32651253 G C SLC5A4 Missense_Mutation p.H22D 0.19 tolerated(0.45) benign(0.005) TCGA-RS-A6TO-01 2 108627351 108627351 G A SLC5A7 3'UTR 0.16 TCGA-RS-A6TO-01 2 139316854 139316854 C G SPOPL Missense_Mutation p.R221G 0.20 deleterious(0.04) probably_damaging(1) TCGA-RS-A6TO-01 2 152348774 152348774 C G NEB Missense_Mutation p.E8299Q 0.06 probably_damaging(1) TCGA-RS-A6TO-01 2 169938254 169938254 C T DHRS9 Missense_Mutation p.H55Y 0.05 deleterious(0.02) benign(0.043) TCGA-RS-A6TO-01 2 179424238 179424238 C G TTN Missense_Mutation p.G28874A 0.11 TCGA-RS-A6TO-01 2 202136345 202136348 GTAA - CASP8 Splice_Site p.X196_splice 0.30 TCGA-RS-A6TO-01 2 202245628 202245628 G C TRAK2 Missense_Mutation p.R795G 0.16 tolerated(0.05) probably_damaging(0.91) TCGA-RS-A6TO-01 2 210588337 210588337 A T MAP2 Intron 0.11 TCGA-RS-A6TO-01 2 233349770 233349770 C T ECEL1 Missense_Mutation p.R296Q 0.32 tolerated(0.2) possibly_damaging(0.45) TCGA-RS-A6TO-01 2 239258006 239258006 C G TRAF3IP1 Missense_Mutation p.R470G 0.27 deleterious(0) probably_damaging(0.997) TCGA-RS-A6TO-01 2 30965219 30965219 C T CAPN13 Silent p.L484L 0.14 TCGA-RS-A6TO-01 2 31133664 31133664 A T GALNT14 3'UTR 0.09 TCGA-RS-A6TO-01 2 32822887 32822887 C T BIRC6 Missense_Mutation p.S4561F 0.17 probably_damaging(0.998) TCGA-RS-A6TO-01 2 68882334 68882334 G C PROKR1 Missense_Mutation p.E270Q 0.14 deleterious(0.05) benign(0.292) TCGA-RS-A6TO-01 2 79253241 79253241 C G REG3G Missense_Mutation p.P8A 0.14 tolerated(0.18) benign(0.01) TCGA-RS-A6TO-01 3 124906188 124906188 C T SLC12A8 Missense_Mutation p.V95I 0.38 tolerated(0.52) benign(0.226) TCGA-RS-A6TO-01 3 12881680 12881680 C T RPL32 Silent p.K19K 0.26 TCGA-RS-A6TO-01 3 1363491 1363491 C G CNTN6 Missense_Mutation p.L307V 0.14 tolerated(1) benign(0.032) TCGA-RS-A6TO-01 3 14564568 14564568 C G GRIP2 RNA 0.10 TCGA-RS-A6TO-01 3 154834708 154834708 G C MME Missense_Mutation p.G196A 0.15 tolerated(0.18) probably_damaging(1) TCGA-RS-A6TO-01 3 184010059 184010059 C T ECE2 3'UTR 0.41 TCGA-RS-A6TO-01 3 27439195 27439195 G T SLC4A7 Missense_Mutation p.H886N 0.15 tolerated(0.55) benign(0.002) TCGA-RS-A6TO-01 3 44609924 44609924 G C ZKSCAN7 Missense_Mutation p.L270F 0.25 deleterious(0.01) possibly_damaging(0.829) TCGA-RS-A6TO-01 3 52183327 52183327 G A POC1A Silent p.F118F 0.33 TCGA-RS-A6TO-01 3 54952906 54952906 G C LRTM1 Missense_Mutation p.D206E 0.32 deleterious(0) probably_damaging(0.999) TCGA-RS-A6TO-01 3 9974768 9974768 C T IL17RC Missense_Mutation p.R623C 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-RS-A6TO-01 4 104016382 104016382 A C BDH2 Silent p.L43L 0.13 TCGA-RS-A6TO-01 4 109861734 109861734 G A COL25A1 Silent p.D211D 0.11 TCGA-RS-A6TO-01 4 169060724 169060724 A G ANXA10 Missense_Mutation p.Y63C 0.28 tolerated(0.07) benign(0.048) TCGA-RS-A6TO-01 4 70504697 70504697 T - UGT2A2 Frame_Shift_Del p.N221Ifs*27 0.17 TCGA-RS-A6TO-01 4 78650133 78650133 A G CNOT6L Missense_Mutation p.M376T 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-RS-A6TO-01 5 10250483 10250483 G A CCT5 Missense_Mutation p.E11K 0.13 deleterious(0.01) benign(0.102) TCGA-RS-A6TO-01 5 131014771 131014771 G A FNIP1 Missense_Mutation p.R434C 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-RS-A6TO-01 5 150422172 150422172 C T TNIP1 Missense_Mutation p.E355K 0.15 deleterious(0.03) possibly_damaging(0.852) TCGA-RS-A6TO-01 5 150889584 150889602 GTCTCCTGTGTAAGGATGA - FAT2 Frame_Shift_Del p.H4014Gfs*15 0.47 TCGA-RS-A6TO-01 5 153796440 153796440 T G GALNT10 Missense_Mutation p.F574V 0.07 tolerated(0.12) possibly_damaging(0.633) TCGA-RS-A6TO-01 5 41927222 41927222 G C FBXO4 Missense_Mutation p.W99C 0.21 deleterious(0) probably_damaging(1) TCGA-RS-A6TO-01 5 74892236 74892236 C G POLK Nonsense_Mutation p.S573* 0.06 TCGA-RS-A6TO-01 5 74892409 74892409 C G POLK Missense_Mutation p.Q631E 0.04 tolerated(0.1) benign(0.015) TCGA-RS-A6TO-01 5 7709343 7709343 A G ADCY2 Missense_Mutation p.Q474R 0.06 tolerated(0.53) benign(0.002) TCGA-RS-A6TO-01 5 95234177 95234177 G C ELL2 Missense_Mutation p.S431C 0.50 deleterious(0) probably_damaging(0.987) TCGA-RS-A6TO-01 6 31922132 31922132 C T NELFE Missense_Mutation p.R277H 0.11 deleterious(0.03) unknown(0) TCGA-RS-A6TO-01 6 56473226 56473226 C T DST Intron 0.34 TCGA-RS-A6TO-01 6 87968210 87968211 - A ZNF292 Frame_Shift_Ins p.N1625Kfs*5 0.15 TCGA-RS-A6TO-01 7 12675695 12675695 G A SCIN Missense_Mutation p.E449K 0.19 deleterious(0.02) probably_damaging(0.984) TCGA-RS-A6TO-01 7 150771302 150771302 G A SLC4A2 Silent p.S904S 0.11 TCGA-RS-A6TO-01 7 150939642 150939642 C T SMARCD3 Silent p.A168A 0.33 TCGA-RS-A6TO-01 7 26223354 26223354 C G NFE2L3 Missense_Mutation p.L262V 0.12 tolerated(0.05) benign(0.139) TCGA-RS-A6TO-01 7 26224177 26224177 C G NFE2L3 Missense_Mutation p.L287V 0.13 tolerated(0.56) benign(0.004) TCGA-RS-A6TO-01 7 26224783 26224783 C T NFE2L3 Missense_Mutation p.L489F 0.15 tolerated(0.15) benign(0.015) TCGA-RS-A6TO-01 7 35009117 35009117 C T DPY19L1 Silent p.L241L 0.27 TCGA-RS-A6TO-01 7 45009308 45009308 C A MYO1G Missense_Mutation p.R500L 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-RS-A6TO-01 7 50468225 50468225 G A IKZF1 Missense_Mutation p.R445H 0.41 deleterious(0.04) probably_damaging(0.911) TCGA-RS-A6TO-01 7 99489911 99489913 AGA - TRIM4 In_Frame_Del p.F459del 0.24 TCGA-RS-A6TO-01 8 105503260 105503260 G A LRP12 Missense_Mutation p.R741C 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.855) TCGA-RS-A6TO-01 8 139793188 139793188 G A COL22A1 Silent p.D544D 0.31 TCGA-RS-A6TO-01 8 143399953 143399953 G A TSNARE1 Silent p.S312S 0.11 TCGA-RS-A6TO-01 8 144893330 144893330 G A SCRIB Silent p.D364D 0.12 TCGA-RS-A6TO-01 8 21905600 21905600 G A FGF17 Missense_Mutation p.R164H 0.58 tolerated(0.07) possibly_damaging(0.873) TCGA-RS-A6TO-01 8 25344843 25344843 G T CDCA2 Missense_Mutation p.R509I 0.17 deleterious(0) probably_damaging(0.98) TCGA-RS-A6TO-01 8 42176072 42176072 C T IKBKB Nonsense_Mutation p.Q415* 0.55 TCGA-RS-A6TO-01 8 62289331 62289331 G A CLVS1 Missense_Mutation p.G208E 0.42 tolerated(0.08) probably_damaging(0.965) TCGA-RS-A6TO-01 8 75898188 75898188 G C CRISPLD1 5'UTR 0.08 TCGA-RS-A6TO-01 8 82606749 82606749 C G SLC10A5 Missense_Mutation p.L153F 0.21 tolerated(0.13) benign(0.066) TCGA-RS-A6TO-01 8 93003946 93003946 A G RUNX1T1 Silent p.D315D 0.44 TCGA-RS-A6TO-01 9 107576453 107576453 G A ABCA1 Missense_Mutation p.R1283C 0.16 deleterious(0.01) benign(0.209) TCGA-RS-A6TO-01 9 113208209 113208209 C T SVEP1 Missense_Mutation p.M1457I 0.12 probably_damaging(0.909) TCGA-RS-A6TO-01 9 120476222 120476222 C T TLR4 Nonsense_Mutation p.R606* 0.34 TCGA-RS-A6TO-01 9 126214554 126214554 C T DENND1A Splice_Site p.X433_splice 0.09 TCGA-RS-A6TO-01 9 126777643 126777643 C T LHX2 Missense_Mutation p.A189V 0.14 tolerated(0.3) benign(0.015) TCGA-RS-A6TO-01 9 135173682 135173682 C A SETX Nonsense_Mutation p.E1856* 0.38 TCGA-RS-A6TO-01 9 139256512 139256512 C T DNLZ Silent p.A163A 0.12 TCGA-RS-A6TO-01 9 139872000 139872000 A T PTGDS 5'UTR 0.36 TCGA-RS-A6TO-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.62 TCGA-RS-A6TO-01 9 35608973 35608973 G A TESK1 Missense_Mutation p.G372E 0.17 tolerated(0.14) benign(0.011) TCGA-RS-A6TO-01 9 35812098 35812098 C T SPAG8 Intron 0.10 TCGA-RS-A6TO-01 9 368169 368169 G A DOCK8 Intron 0.16 TCGA-RS-A6TO-01 9 84533076 84533076 G - SPATA31D5P RNA 0.08 TCGA-RS-A6TO-01 9 88694257 88694257 C T GOLM1 Splice_Site 0.26 TCGA-RS-A6TO-01 9 88881057 88881057 T C ISCA1 Silent p.T97T 0.10 TCGA-RS-A6TO-01 9 95838220 95838220 C T SUSD3 Silent p.I81I 0.07 TCGA-RS-A6TO-01 X 100169204 100169204 C A XKRX 3'UTR 0.17 TCGA-RS-A6TO-01 X 118108892 118108892 C T LONRF3 Missense_Mutation p.P50L 0.22 tolerated_low_confidence(0.19) benign(0.079) TCGA-RS-A6TO-01 X 118678342 118678342 T A CXorf56 Missense_Mutation p.T133S 0.15 tolerated(0.87) benign(0.001) TCGA-RS-A6TO-01 X 125685745 125685745 C T DCAF12L1 Missense_Mutation p.D283N 0.09 tolerated(0.42) probably_damaging(0.983) TCGA-RS-A6TO-01 X 12939373 12939373 G A TLR8 Silent p.L738L 0.12 TCGA-RS-A6TO-01 X 130407595 130407595 C T IGSF1 3'UTR 0.13 TCGA-RS-A6TO-01 X 140994837 140994837 T A MAGEC1 Silent p.P549P 0.11 TCGA-RS-A6TO-01 X 141291308 141291308 A G MAGEC2 Missense_Mutation p.Y156H 0.16 deleterious(0.04) probably_damaging(1) TCGA-RS-A6TO-01 X 153070325 153070325 C T PDZD4 Missense_Mutation p.D265N 0.32 deleterious(0.02) benign(0.001) TCGA-RS-A6TO-01 X 21670433 21670433 G - CNKSR2 Frame_Shift_Del p.E968Kfs*2 0.25 TCGA-RS-A6TO-01 X 29973740 29973740 G A IL1RAPL1 Missense_Mutation p.V632I 0.30 tolerated_low_confidence(0.36) benign(0.001) TCGA-RS-A6TO-01 X 30269282 30269282 G A MAGEB1 Missense_Mutation p.M224I 0.23 deleterious(0) benign(0.105) TCGA-RS-A6TO-01 X 40456836 40456836 C T ATP6AP2 Missense_Mutation p.R152C 0.13 deleterious(0) possibly_damaging(0.518) TCGA-RS-A6TO-01 X 49957067 49957067 G C AKAP4 Missense_Mutation p.S766C 0.17 tolerated(0.09) probably_damaging(0.975) TCGA-RS-A6TO-01 X 52841625 52841625 G T XAGE5 Missense_Mutation p.R12L 0.05 tolerated(0.43) probably_damaging(0.913) TCGA-RS-A6TO-01 X 53588762 53588762 C G HUWE1 Missense_Mutation p.E2488Q 0.06 benign(0.403) TCGA-RS-A6TO-01 X 54814982 54814982 C A ITIH6 Silent p.G239G 0.23 TCGA-RS-A6TO-01 X 54817504 54817504 C T ITIH6 Missense_Mutation p.E128K 0.08 tolerated(0.17) benign(0.25) TCGA-RS-A6TO-01 X 69502411 69502411 C T RAB41 Silent p.F50F 0.16 TCGA-RS-A6TO-01 X 77130965 77130965 A T MAGT1 Missense_Mutation p.F110I 0.12 deleterious(0) possibly_damaging(0.804) TCGA-RS-A6TP-01 10 115389442 115389442 C T NRAP Missense_Mutation p.D649N 0.38 tolerated(0.32) benign(0.053) TCGA-RS-A6TP-01 10 11911548 11911548 G A PROSER2 Missense_Mutation p.D151N 0.50 tolerated(0.09) possibly_damaging(0.767) TCGA-RS-A6TP-01 10 11911722 11911722 G A PROSER2 Missense_Mutation p.E209K 0.38 tolerated(0.07) probably_damaging(0.978) TCGA-RS-A6TP-01 10 14870206 14870206 C T CDNF Missense_Mutation p.D61N 0.44 tolerated(0.26) benign(0.406) TCGA-RS-A6TP-01 10 15688893 15688893 C T ITGA8 Missense_Mutation p.G387S 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-RS-A6TP-01 10 3180497 3180497 C T PITRM1 Missense_Mutation p.E985K 0.47 deleterious(0.01) possibly_damaging(0.493) TCGA-RS-A6TP-01 10 436214 436214 G A DIP2C Missense_Mutation p.A495V 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-RS-A6TP-01 10 75530782 75530782 C G SEC24C Missense_Mutation p.L1072V 0.44 tolerated(0.2) benign(0.018) TCGA-RS-A6TP-01 10 98386580 98386580 G A PIK3AP1 Silent p.D518D 0.38 TCGA-RS-A6TP-01 10 99969386 99969386 G A R3HCC1L Silent p.V505V 0.48 TCGA-RS-A6TP-01 11 121474984 121474984 C T SORL1 Silent p.C1534C 0.86 TCGA-RS-A6TP-01 11 43852621 43852621 G T HSD17B12 Intron 0.51 TCGA-RS-A6TP-01 11 47660546 47660546 A G MTCH2 Missense_Mutation p.C49R 0.44 deleterious(0.04) benign(0.019) TCGA-RS-A6TP-01 11 59211536 59211536 G C OR5A1 Missense_Mutation p.E299Q 0.37 deleterious(0) possibly_damaging(0.821) TCGA-RS-A6TP-01 11 62284339 62284339 C G AHNAK Silent p.G5850G 0.41 TCGA-RS-A6TP-01 11 71146832 71146832 G A DHCR7 Silent p.G339G 0.37 TCGA-RS-A6TP-01 11 800350 800350 G A PIDD Nonsense_Mutation p.Q715* 0.34 TCGA-RS-A6TP-01 12 122617948 122617948 C T MLXIP Silent p.L382L 0.41 TCGA-RS-A6TP-01 12 122618381 122618381 C T MLXIP Missense_Mutation p.P527S 0.38 tolerated(0.13) benign(0.099) TCGA-RS-A6TP-01 12 302467 302467 G A SLC6A12 Silent p.L502L 0.70 TCGA-RS-A6TP-01 12 30843427 30843427 C T IPO8 Intron 0.79 TCGA-RS-A6TP-01 12 30884369 30884369 G A CAPRIN2 Missense_Mutation p.A323V 0.59 tolerated(0.19) benign(0.049) TCGA-RS-A6TP-01 12 49392030 49392030 C G DDN Missense_Mutation p.R210T 0.46 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-RS-A6TP-01 12 49423200 49423200 G A KMT2D Nonsense_Mutation p.Q4687* 0.53 TCGA-RS-A6TP-01 12 58020424 58020424 G A B4GALNT1 3'UTR 0.35 TCGA-RS-A6TP-01 12 70729300 70729300 C A CNOT2 Missense_Mutation p.N244K 0.38 deleterious(0.02) possibly_damaging(0.804) TCGA-RS-A6TP-01 12 97313760 97313760 C T NEDD1 Intron 0.42 TCGA-RS-A6TP-01 13 114523768 114523768 G A GAS6 3'UTR 0.19 TCGA-RS-A6TP-01 13 39263204 39263204 G A FREM2 Missense_Mutation p.E575K 0.33 deleterious(0.01) benign(0.05) TCGA-RS-A6TP-01 14 105643040 105643040 G A NUDT14 Missense_Mutation p.R87W 0.46 tolerated(0.26) possibly_damaging(0.616) TCGA-RS-A6TP-01 14 21825383 21825383 G C SUPT16H Missense_Mutation p.S878C 0.30 tolerated(0.17) probably_damaging(0.971) TCGA-RS-A6TP-01 14 22409823 22409823 G C TRAV9-2 Missense_Mutation p.A105P 0.17 deleterious(0) probably_damaging(0.965) TCGA-RS-A6TP-01 14 31644226 31644226 G A HECTD1 Missense_Mutation p.S165F 0.44 deleterious(0) probably_damaging(0.997) TCGA-RS-A6TP-01 14 39818085 39818085 C G CTAGE5 Missense_Mutation p.P723A 0.05 deleterious(0.02) possibly_damaging(0.675) TCGA-RS-A6TP-01 14 63416882 63416882 C G KCNH5 Missense_Mutation p.K446N 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-RS-A6TP-01 14 64699769 64699769 G A ESR2 3'Flank 0.50 TCGA-RS-A6TP-01 14 71445160 71445160 T G PCNX Missense_Mutation p.N702K 0.46 tolerated(0.29) benign(0.297) TCGA-RS-A6TP-01 14 92915514 92915514 C A SLC24A4 Missense_Mutation p.F278L 0.32 tolerated(0.67) benign(0) TCGA-RS-A6TP-01 15 101606073 101606073 G A LRRK1 Missense_Mutation p.D1811N 0.38 tolerated_low_confidence(0.36) benign(0.001) TCGA-RS-A6TP-01 15 76019645 76019645 G A ODF3L1 Missense_Mutation p.G197R 0.42 tolerated(0.7) benign(0.008) TCGA-RS-A6TP-01 15 85164921 85164921 G C ZSCAN2 Missense_Mutation p.E499Q 0.04 deleterious(0) probably_damaging(0.993) TCGA-RS-A6TP-01 15 85664082 85664082 G T PDE8A Missense_Mutation p.D597Y 0.05 deleterious(0) probably_damaging(1) TCGA-RS-A6TP-01 16 14540841 14540841 C T PARN Missense_Mutation p.E590K 0.39 tolerated_low_confidence(0.08) benign(0.066) TCGA-RS-A6TP-01 16 21728274 21728274 G T OTOA Missense_Mutation p.G512V 0.43 deleterious(0) probably_damaging(0.988) TCGA-RS-A6TP-01 16 21847243 21847243 G C NPIPB4 Intron 0.41 TCGA-RS-A6TP-01 16 30544358 30544358 G A ZNF747 3'UTR 0.05 TCGA-RS-A6TP-01 16 3064120 3064120 G A CLDN9 3'UTR 0.37 TCGA-RS-A6TP-01 16 4431562 4431562 G A VASN Silent p.L228L 0.31 TCGA-RS-A6TP-01 16 56659593 56659593 G A MT1E 5'UTR 0.62 TCGA-RS-A6TP-01 16 57074583 57074583 C G NLRC5 Silent p.L964L 0.44 TCGA-RS-A6TP-01 16 69143614 69143614 C T HAS3 Missense_Mutation p.R106C 0.47 tolerated(0.05) possibly_damaging(0.849) TCGA-RS-A6TP-01 16 69377206 69377206 G A TMED6 3'UTR 0.38 TCGA-RS-A6TP-01 16 70713746 70713746 C A MTSS1L Nonsense_Mutation p.E109* 0.36 TCGA-RS-A6TP-01 17 28618498 28618498 C T BLMH Silent p.L14L 0.44 TCGA-RS-A6TP-01 17 45364505 45364505 G C ITGB3 Missense_Mutation p.A283P 0.47 deleterious(0) probably_damaging(1) TCGA-RS-A6TP-01 17 46929948 46929948 G A CALCOCO2 Silent p.L285L 0.54 TCGA-RS-A6TP-01 17 56348162 56348162 G A MPO Missense_Mutation p.S698L 0.50 deleterious(0) probably_damaging(0.991) TCGA-RS-A6TP-01 17 61556405 61556405 C G ACE Missense_Mutation p.S152C 0.22 deleterious(0) possibly_damaging(0.818) TCGA-RS-A6TP-01 17 64684434 64684434 C T PRKCA Missense_Mutation p.S234L 0.38 tolerated(0.11) benign(0.077) TCGA-RS-A6TP-01 17 71419642 71419642 C G SDK2 Missense_Mutation p.E594Q 0.78 tolerated(0.94) probably_damaging(1) TCGA-RS-A6TP-01 17 7230030 7230030 C G NEURL4 Missense_Mutation p.E364D 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-RS-A6TP-01 18 44261974 44261974 G A ST8SIA5 Missense_Mutation p.T208M 0.49 probably_damaging(1) TCGA-RS-A6TP-01 18 54547341 54547347 TGAGGGA - WDR7 Frame_Shift_Del p.E1158Sfs*3 0.39 TCGA-RS-A6TP-01 18 77918383 77918383 G A PARD6G Silent p.I134I 0.50 TCGA-RS-A6TP-01 19 11944282 11944282 G C ZNF440 3'UTR 0.38 TCGA-RS-A6TP-01 19 12298256 12298256 G A ZNF136 Missense_Mutation p.E355K 0.38 tolerated(0.12) probably_damaging(0.998) TCGA-RS-A6TP-01 19 1231186 1231186 G A C19orf26 Silent p.F356F 0.42 TCGA-RS-A6TP-01 19 19414202 19414202 C T SUGP1 Missense_Mutation p.E240K 0.46 deleterious(0.03) probably_damaging(0.91) TCGA-RS-A6TP-01 19 22034712 22034712 C T ZNF43 5'UTR 0.33 TCGA-RS-A6TP-01 19 22154433 22154433 G C ZNF208 Missense_Mutation p.H1135D 0.44 deleterious(0) probably_damaging(0.984) TCGA-RS-A6TP-01 19 36211785 36211785 C T KMT2B Silent p.T512T 0.35 TCGA-RS-A6TP-01 19 44981932 44981932 G C ZNF180 Missense_Mutation p.Q256E 0.44 deleterious(0.05) benign(0.006) TCGA-RS-A6TP-01 19 50838330 50838330 C G NAPSB RNA 0.25 TCGA-RS-A6TP-01 19 53960233 53960233 G A ZNF761 RNA 0.30 TCGA-RS-A6TP-01 19 54818780 54818780 C T LILRA5 Missense_Mutation p.G273D 0.37 deleterious(0.01) benign(0.117) TCGA-RS-A6TP-01 19 55776691 55776691 G C HSPBP1 Silent p.L320L 0.48 TCGA-RS-A6TP-01 19 56459540 56459540 G A NLRP8 Missense_Mutation p.R91H 0.33 tolerated(0.33) benign(0.006) TCGA-RS-A6TP-01 19 58232845 58232845 G A ZNF671 Silent p.F203F 0.52 TCGA-RS-A6TP-01 19 58352249 58352249 G C ZNF587B Missense_Mutation p.Q69H 0.33 tolerated(0.07) probably_damaging(0.928) TCGA-RS-A6TP-01 19 6374950 6374950 C T ALKBH7 Missense_Mutation p.P211L 0.39 tolerated(0.13) benign(0.005) TCGA-RS-A6TP-01 19 8389622 8389622 C T KANK3 Silent p.Q725Q 0.07 TCGA-RS-A6TP-01 1 102302509 102302509 T C OLFM3 Missense_Mutation p.T48A 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-RS-A6TP-01 1 113638916 113638916 G A LRIG2 Silent p.L340L 0.42 TCGA-RS-A6TP-01 1 150312892 150312892 G C PRPF3 Missense_Mutation p.K407N 0.34 tolerated(0.45) benign(0.158) TCGA-RS-A6TP-01 1 155233062 155233062 G A CLK2 Missense_Mutation p.R482W 0.42 deleterious(0.05) possibly_damaging(0.649) TCGA-RS-A6TP-01 1 157667192 157667192 C A FCRL3 Silent p.L194L 0.29 TCGA-RS-A6TP-01 1 16464522 16464522 C T EPHA2 Missense_Mutation p.E380K 0.60 tolerated(0.06) benign(0.042) TCGA-RS-A6TP-01 1 200619732 200619732 G A DDX59 Nonsense_Mutation p.Q379* 0.42 TCGA-RS-A6TP-01 1 240370281 240370281 C T FMN2 Silent p.L723L 0.43 TCGA-RS-A6TP-01 1 243349126 243349126 C G CEP170 Missense_Mutation p.E507D 0.44 tolerated(0.15) benign(0.079) TCGA-RS-A6TP-01 1 27087900 27087901 CA TAGT ARID1A Frame_Shift_Ins p.G731Vfs*12 0.26 TCGA-RS-A6TP-01 1 28598203 28598203 G C SESN2 Missense_Mutation p.E59Q 0.35 tolerated(0.11) benign(0.416) TCGA-RS-A6TP-01 1 31194536 31194536 G A MATN1 Missense_Mutation p.R53W 0.51 deleterious(0) possibly_damaging(0.827) TCGA-RS-A6TP-01 1 42049848 42049848 G A HIVEP3 Silent p.L207L 0.47 TCGA-RS-A6TP-01 1 84982061 84982061 C T SPATA1 RNA 0.55 TCGA-RS-A6TP-01 20 3726181 3726181 G C HSPA12B Missense_Mutation p.K165N 0.34 deleterious(0) probably_damaging(0.92) TCGA-RS-A6TP-01 20 48166709 48166709 G A PTGIS Missense_Mutation p.P31L 0.44 deleterious(0) probably_damaging(1) TCGA-RS-A6TP-01 20 62326478 62326478 C T RTEL1 Silent p.L1159L 0.40 TCGA-RS-A6TP-01 22 22673296 22673296 C G IGLV5-52 Missense_Mutation p.S30C 0.35 deleterious(0) probably_damaging(0.998) TCGA-RS-A6TP-01 2 105859151 105859151 G A GPR45 Missense_Mutation p.C279Y 0.08 deleterious(0) probably_damaging(0.954) TCGA-RS-A6TP-01 2 136566217 136566217 C T LCT Missense_Mutation p.E1234K 0.46 tolerated(0.31) benign(0.012) TCGA-RS-A6TP-01 2 179392441 179392441 C G TTN Missense_Mutation p.L35804F 0.42 TCGA-RS-A6TP-01 2 179414043 179414043 G C TTN Missense_Mutation p.I30770M 0.36 TCGA-RS-A6TP-01 2 180311336 180311336 C T ZNF385B Missense_Mutation p.E278K 0.44 tolerated(0.58) probably_damaging(0.997) TCGA-RS-A6TP-01 2 39934241 39934241 C T TMEM178A Silent p.L189L 0.49 TCGA-RS-A6TP-01 2 55601988 55601988 A G CCDC88A Missense_Mutation p.L102S 0.35 deleterious(0.03) benign(0.105) TCGA-RS-A6TP-01 2 69659119 69659119 C G NFU1 Missense_Mutation p.K27N 0.35 tolerated(0.17) benign(0.008) TCGA-RS-A6TP-01 2 73675676 73675676 C T ALMS1 Silent p.D673D 0.40 TCGA-RS-A6TP-01 2 89100786 89100786 A T ANKRD36BP2 RNA 0.35 TCGA-RS-A6TP-01 2 97531637 97531637 C G SEMA4C Missense_Mutation p.K96N 0.31 deleterious(0) probably_damaging(1) TCGA-RS-A6TP-01 3 122186243 122186243 C T KPNA1 Missense_Mutation p.E55K 0.24 tolerated(0.66) benign(0.314) TCGA-RS-A6TP-01 3 136012595 136012595 C G PCCB Intron 0.19 TCGA-RS-A6TP-01 3 138178050 138178050 C T ESYT3 Silent p.I201I 0.23 TCGA-RS-A6TP-01 3 148903144 148903144 C G CP Missense_Mutation p.E723Q 0.21 tolerated(0.51) benign(0.001) TCGA-RS-A6TP-01 3 156865968 156865968 C T CCNL1 3'UTR 0.20 TCGA-RS-A6TP-01 3 16450954 16450954 G C RFTN1 Missense_Mutation p.I123M 0.40 tolerated(0.19) possibly_damaging(0.865) TCGA-RS-A6TP-01 3 184947316 184947316 G C EHHADH Missense_Mutation p.P123A 0.57 deleterious(0) probably_damaging(0.99) TCGA-RS-A6TP-01 3 186572383 186572383 G A ADIPOQ Missense_Mutation p.D209N 0.48 deleterious(0) probably_damaging(0.928) TCGA-RS-A6TP-01 3 186954356 186954356 C G MASP1 Splice_Site p.X435_splice 0.21 TCGA-RS-A6TP-01 3 31674465 31674465 T C STT3B Silent p.R742R 0.04 TCGA-RS-A6TP-01 3 49867055 49867055 C G TRAIP Missense_Mutation p.D411H 0.35 deleterious(0.04) benign(0.39) TCGA-RS-A6TP-01 4 110223071 110223071 G A COL25A1 Silent p.A35A 0.38 TCGA-RS-A6TP-01 4 110394259 110394259 C G SEC24B Nonsense_Mutation p.S326* 0.33 TCGA-RS-A6TP-01 4 183714086 183714086 C G TENM3 Missense_Mutation p.I2087M 0.44 tolerated(0.19) possibly_damaging(0.703) TCGA-RS-A6TP-01 5 137088808 137088808 T C HNRNPA0 3'UTR 0.51 TCGA-RS-A6TP-01 5 13714730 13714730 C A DNAH5 Splice_Site p.X4304_splice 0.38 TCGA-RS-A6TP-01 5 13727702 13727702 G A DNAH5 Missense_Mutation p.L3983F 0.46 possibly_damaging(0.849) TCGA-RS-A6TP-01 5 138715753 138715753 C T SLC23A1 Silent p.L224L 0.41 TCGA-RS-A6TP-01 5 140762697 140762697 G C PCDHGA7 Silent p.L77L 0.44 TCGA-RS-A6TP-01 5 160025845 160025845 C T ATP10B Missense_Mutation p.D1166N 0.48 deleterious(0.01) probably_damaging(1) TCGA-RS-A6TP-01 5 167689329 167689329 C T TENM2 Silent p.I2613I 0.41 TCGA-RS-A6TP-01 5 180219180 180219180 G A MGAT1 Silent p.F264F 0.47 TCGA-RS-A6TP-01 5 36163786 36163786 G C SKP2 Missense_Mutation p.G107A 0.39 tolerated(0.54) benign(0.09) TCGA-RS-A6TP-01 5 37044527 37044527 G T NIPBL Nonsense_Mutation p.E2063* 0.40 TCGA-RS-A6TP-01 5 40852293 40852293 A G CARD6 Missense_Mutation p.K287E 0.38 tolerated(0.11) benign(0.035) TCGA-RS-A6TP-01 5 635560 635560 G A CEP72 Silent p.T255T 0.41 TCGA-RS-A6TP-01 5 71495348 71495348 A G MAP1B Missense_Mutation p.T2056A 0.16 benign(0.007) TCGA-RS-A6TP-01 5 76332495 76332495 G T AGGF1 Nonsense_Mutation p.E211* 0.31 TCGA-RS-A6TP-01 5 80063916 80063916 G T MSH3 Missense_Mutation p.K687N 0.48 tolerated(0.25) benign(0.033) TCGA-RS-A6TP-01 6 25966997 25966997 G A TRIM38 Missense_Mutation p.A83T 0.34 tolerated(0.84) benign(0.004) TCGA-RS-A6TP-01 6 26017276 26017276 G C HIST1H1A 3'UTR 0.38 TCGA-RS-A6TP-01 6 26217210 26217210 G A HIST1H2AE Missense_Mutation p.G3E 0.45 deleterious_low_confidence(0.03) unknown(0) TCGA-RS-A6TP-01 6 27860798 27860798 C G HIST1H2AM Missense_Mutation p.V44L 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.451) TCGA-RS-A6TP-01 6 33288805 33288805 G A DAXX Silent p.T249T 0.35 TCGA-RS-A6TP-01 6 85446921 85446921 C G TBX18 Missense_Mutation p.E436Q 0.80 tolerated(0.38) probably_damaging(0.979) TCGA-RS-A6TP-01 7 100463561 100463561 G A SLC12A9 Missense_Mutation p.M693I 0.89 deleterious(0.01) benign(0.41) TCGA-RS-A6TP-01 7 150710425 150710425 C T NOS3 Silent p.G1071G 0.05 TCGA-RS-A6TP-01 7 151873545 151873545 G C KMT2C Nonsense_Mutation p.S2998* 0.82 TCGA-RS-A6TP-01 7 28609991 28609991 G A CREB5 Silent p.S100S 0.05 TCGA-RS-A6TP-01 7 44578723 44578723 G A NPC1L1 Silent p.L425L 0.37 TCGA-RS-A6TP-01 7 6194321 6194321 C T USP42 Missense_Mutation p.R1046W 0.55 deleterious(0) possibly_damaging(0.862) TCGA-RS-A6TP-01 7 98515050 98515050 G A TRRAP Silent p.L790L 0.87 TCGA-RS-A6TP-01 7 98606091 98606091 C T TRRAP Silent p.C3601C 0.39 TCGA-RS-A6TP-01 7 99757693 99757693 C T GAL3ST4 Missense_Mutation p.R440Q 0.35 tolerated(0.72) benign(0.058) TCGA-RS-A6TP-01 8 144995369 144995369 C T PLEC Missense_Mutation p.D3011N 0.37 probably_damaging(0.985) TCGA-RS-A6TP-01 8 21925182 21925182 C T DMTN Missense_Mutation p.R80C 0.42 deleterious(0.01) possibly_damaging(0.88) TCGA-RS-A6TP-01 8 69633616 69633616 G C C8orf34 Missense_Mutation p.E450Q 0.34 tolerated(0.06) possibly_damaging(0.549) TCGA-RS-A6TP-01 8 8747707 8747707 G A MFHAS1 Silent p.T954T 0.40 TCGA-RS-A6TP-01 9 130493404 130493404 G A TTC16 Missense_Mutation p.R781Q 0.14 tolerated(0.73) benign(0.009) TCGA-RS-A6TP-01 9 131246304 131246304 G A ODF2 Missense_Mutation p.E359K 0.50 deleterious(0.04) benign(0.238) TCGA-RS-A6TP-01 9 140127032 140127032 C T SLC34A3 Missense_Mutation p.R61C 0.43 deleterious(0.01) benign(0.031) TCGA-RS-A6TP-01 9 140127073 140127073 C G SLC34A3 Silent p.L74L 0.50 TCGA-RS-A6TP-01 9 2718032 2718032 C T KCNV2 Missense_Mutation p.T98M 0.48 tolerated(0.25) benign(0.012) TCGA-RS-A6TP-01 9 41963929 41963929 G C RP11-204M4.2 RNA 0.07 TCGA-RS-A6TP-01 9 6012686 6012686 G A RANBP6 Silent p.V974V 0.34 TCGA-RS-A6TP-01 9 84547987 84547987 G A RP11-383M4.6 Intron 0.31 TCGA-RS-A6TP-01 X 120181742 120181742 G C GLUD2 Missense_Mutation p.K68N 0.81 tolerated(0.18) benign(0.001) TCGA-RS-A6TP-01 X 133527593 133527593 G A PHF6 Silent p.R101R 0.93 TCGA-RS-A6TP-01 X 18748409 18748409 G A PPEF1 Missense_Mutation p.E53K 0.89 deleterious(0.02) probably_damaging(0.999) TCGA-RS-A6TP-01 X 41193508 41193508 G C DDX3X Translation_Start_Site p.M1? 0.80 deleterious(0.02) benign(0.38) TCGA-RS-A6TP-01 X 53223011 53223011 C T KDM5C Missense_Mutation p.G1354E 0.75 tolerated(0.31) benign(0.01) TCGA-T2-A6WX-01 10 108427467 108427467 C A SORCS1 Missense_Mutation p.Q761H 0.16 tolerated(0.1) benign(0.115) TCGA-T2-A6WX-01 10 135165854 135165854 C T PRAP1 Silent p.G122G 0.23 TCGA-T2-A6WX-01 10 21098748 21098748 G C NEBL Silent p.L866L 0.19 TCGA-T2-A6WX-01 10 43617453 43617453 G A RET Silent p.T930T 0.13 TCGA-T2-A6WX-01 10 50315639 50315639 C T VSTM4 Missense_Mutation p.V153I 0.21 deleterious(0) possibly_damaging(0.519) TCGA-T2-A6WX-01 10 73046445 73046445 G A UNC5B Splice_Site p.X185_splice 0.04 TCGA-T2-A6WX-01 10 75101306 75101306 G C TTC18 Missense_Mutation p.L215V 0.20 deleterious(0.02) probably_damaging(0.99) TCGA-T2-A6WX-01 10 81056365 81056365 C T ZMIZ1 Silent p.S456S 0.12 TCGA-T2-A6WX-01 10 94405203 94405203 G A KIF11 Missense_Mutation p.R784K 0.28 tolerated(0.14) benign(0.002) TCGA-T2-A6WX-01 10 94405303 94405303 G A KIF11 Silent p.Q817Q 0.22 TCGA-T2-A6WX-01 10 94405326 94405326 G C KIF11 Missense_Mutation p.R825T 0.24 tolerated(0.5) benign(0.007) TCGA-T2-A6WX-01 10 95159223 95159233 CCTTTACTGTC - MYOF Frame_Shift_Del p.T380Nfs*8 0.16 TCGA-T2-A6WX-01 11 111864234 111864234 G A DIXDC1 Silent p.Q428Q 0.20 TCGA-T2-A6WX-01 11 118461072 118461072 G A ARCN1 Missense_Mutation p.E279K 0.22 deleterious(0) probably_damaging(0.973) TCGA-T2-A6WX-01 11 119054012 119054012 G A NLRX1 Missense_Mutation p.R931Q 0.22 tolerated(1) benign(0.369) TCGA-T2-A6WX-01 11 1780271 1780271 C G CTSD Missense_Mutation p.K133N 0.36 tolerated(0.08) benign(0.236) TCGA-T2-A6WX-01 11 22646608 22646608 G T FANCF Missense_Mutation p.A250D 0.29 deleterious(0.04) benign(0.231) TCGA-T2-A6WX-01 11 309246 309246 C T IFITM2 3'UTR 0.33 TCGA-T2-A6WX-01 11 45892066 45892066 C T CRY2 Missense_Mutation p.S532L 0.24 deleterious(0.04) benign(0.116) TCGA-T2-A6WX-01 11 47269208 47269208 G C ACP2 Missense_Mutation p.S94C 0.26 deleterious(0) probably_damaging(0.96) TCGA-T2-A6WX-01 11 47270244 47270244 G A ACP2 Silent p.L33L 0.27 TCGA-T2-A6WX-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-T2-A6WX-01 11 558218 558218 C T C11orf35 Silent p.Q114Q 0.41 TCGA-T2-A6WX-01 11 57317567 57317567 G A SMTNL1 Silent p.V507V 0.19 TCGA-T2-A6WX-01 11 5776059 5776059 C T OR52N4 Missense_Mutation p.S30F 0.20 deleterious(0.01) probably_damaging(0.933) TCGA-T2-A6WX-01 11 61113381 61113381 G A DAK Missense_Mutation p.G513E 0.22 tolerated(0.08) benign(0.114) TCGA-T2-A6WX-01 11 62291749 62291749 T A AHNAK Silent p.I3380I 0.19 TCGA-T2-A6WX-01 11 63994194 63994194 G A NUDT22 Missense_Mutation p.E24K 0.20 deleterious(0.03) possibly_damaging(0.814) TCGA-T2-A6WX-01 11 66458979 66458979 C T SPTBN2 Missense_Mutation p.E1781K 0.29 deleterious(0) possibly_damaging(0.461) TCGA-T2-A6WX-01 11 66638908 66638908 G C PC Missense_Mutation p.S122C 0.20 deleterious(0) probably_damaging(0.995) TCGA-T2-A6WX-01 11 82924002 82924002 C G ANKRD42 Intron 0.24 TCGA-T2-A6WX-01 11 86519137 86519137 C G PRSS23 Nonsense_Mutation p.S151* 0.21 TCGA-T2-A6WX-01 12 112622357 112622357 G A HECTD4 Silent p.V3325V 0.29 TCGA-T2-A6WX-01 12 119568502 119568502 G A SRRM4 Missense_Mutation p.E212K 0.41 deleterious_low_confidence(0) benign(0.012) TCGA-T2-A6WX-01 12 120611884 120611884 G A GCN1L1 Nonsense_Mutation p.Q395* 0.17 TCGA-T2-A6WX-01 12 122990163 122990163 G C RSRC2 Missense_Mutation p.Q406E 0.26 tolerated(0.13) unknown(0) TCGA-T2-A6WX-01 12 123265739 123265739 C G CCDC62 Missense_Mutation p.I86M 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-T2-A6WX-01 12 26753036 26753036 C T ITPR2 Missense_Mutation p.E1229K 0.15 tolerated(0.49) benign(0.065) TCGA-T2-A6WX-01 12 42858745 42858745 G A PRICKLE1 Missense_Mutation p.S364L 0.27 tolerated(0.3) benign(0.046) TCGA-T2-A6WX-01 12 4722928 4722928 G T DYRK4 3'UTR 0.21 TCGA-T2-A6WX-01 12 50367073 50367073 C G AQP6 Missense_Mutation p.F39L 0.25 tolerated(0.19) probably_damaging(0.998) TCGA-T2-A6WX-01 13 23904625 23904625 C T SACS Missense_Mutation p.D4464N 0.19 probably_damaging(0.997) TCGA-T2-A6WX-01 13 32849050 32849050 C T FRY Silent p.I2736I 0.25 TCGA-T2-A6WX-01 13 33760037 33760037 C A STARD13 Intron 0.19 TCGA-T2-A6WX-01 13 37006796 37006796 C G CCNA1 Missense_Mutation p.S13C 0.14 tolerated_low_confidence(0.28) benign(0.001) TCGA-T2-A6WX-01 13 52026641 52026641 C A INTS6 Silent p.L7L 0.16 TCGA-T2-A6WX-01 13 77641807 77641807 T C MYCBP2 Missense_Mutation p.K4084E 0.18 probably_damaging(0.965) TCGA-T2-A6WX-01 14 23240675 23240675 C T OXA1L Missense_Mutation p.L466F 0.19 deleterious(0) possibly_damaging(0.859) TCGA-T2-A6WX-01 14 31602773 31602773 G A HECTD1 Silent p.L1229L 0.20 TCGA-T2-A6WX-01 14 38061414 38061414 G A FOXA1 Missense_Mutation p.T192M 0.04 deleterious(0) probably_damaging(1) TCGA-T2-A6WX-01 14 54950444 54950444 C T GMFB Silent p.V15V 0.14 TCGA-T2-A6WX-01 15 41165520 41165520 G A RHOV Silent p.D149D 0.24 TCGA-T2-A6WX-01 15 48056379 48056379 G T SEMA6D Missense_Mutation p.G325V 0.22 deleterious(0) probably_damaging(0.999) TCGA-T2-A6WX-01 15 71302194 71302194 G A LRRC49 Missense_Mutation p.A491T 0.29 tolerated(0.06) benign(0.394) TCGA-T2-A6WX-01 15 90770786 90770786 C G SEMA4B Intron 0.19 TCGA-T2-A6WX-01 16 18851040 18851040 C G SMG1 Missense_Mutation p.E2309Q 0.22 deleterious(0.01) probably_damaging(0.963) TCGA-T2-A6WX-01 16 3779766 3779766 G C CREBBP Nonsense_Mutation p.S1761* 0.20 TCGA-T2-A6WX-01 16 46762933 46762933 C T MYLK3 Intron 0.21 TCGA-T2-A6WX-01 16 47156636 47156636 C G NETO2 Missense_Mutation p.E196Q 0.25 deleterious(0.02) benign(0.279) TCGA-T2-A6WX-01 16 67709387 67709387 C G GFOD2 Missense_Mutation p.E277Q 0.30 tolerated(0.12) benign(0.222) TCGA-T2-A6WX-01 16 68598390 68598390 C T ZFP90 Missense_Mutation p.S567F 0.27 tolerated(0.45) probably_damaging(0.925) TCGA-T2-A6WX-01 16 71417890 71417890 G C CALB2 Missense_Mutation p.L165F 0.20 tolerated(0.05) possibly_damaging(0.724) TCGA-T2-A6WX-01 16 84089675 84089675 C T MBTPS1 Missense_Mutation p.R966Q 0.23 tolerated_low_confidence(0.31) benign(0.022) TCGA-T2-A6WX-01 16 87960549 87960549 G A CA5A Missense_Mutation p.H49Y 0.27 deleterious(0) probably_damaging(0.973) TCGA-T2-A6WX-01 16 89350234 89350234 G A ANKRD11 Nonsense_Mutation p.R906* 0.28 TCGA-T2-A6WX-01 17 26671454 26671454 G A TNFAIP1 Missense_Mutation p.R260H 0.28 deleterious(0.05) benign(0.416) TCGA-T2-A6WX-01 17 36963199 36963199 G A CWC25 Nonsense_Mutation p.Q241* 0.23 TCGA-T2-A6WX-01 17 39502764 39502764 C T KRT33A Missense_Mutation p.V345M 0.19 deleterious(0.03) possibly_damaging(0.703) TCGA-T2-A6WX-01 17 42452084 42452084 G C ITGA2B Missense_Mutation p.N962K 0.23 tolerated(0.08) possibly_damaging(0.507) TCGA-T2-A6WX-01 17 5124583 5124583 C T SCIMP Missense_Mutation p.E70K 0.20 deleterious(0) probably_damaging(0.997) TCGA-T2-A6WX-01 17 7286819 7286819 G C TNK1 Missense_Mutation p.E104Q 0.23 tolerated(0.35) benign(0.432) TCGA-T2-A6WX-01 17 7286862 7286862 G C TNK1 Missense_Mutation p.R118T 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-T2-A6WX-01 17 73126515 73126515 C G NT5C 3'UTR 0.26 TCGA-T2-A6WX-01 17 76115082 76115082 G C TMC6 Missense_Mutation p.I619M 0.14 deleterious(0.03) benign(0.099) TCGA-T2-A6WX-01 17 77709258 77709258 C T ENPP7 Silent p.D272D 0.26 TCGA-T2-A6WX-01 17 78247078 78247078 G A RNF213 Missense_Mutation p.E46K 0.21 benign(0.008) TCGA-T2-A6WX-01 17 7826832 7826832 G C KCNAB3 Missense_Mutation p.S360C 0.24 tolerated(0.25) probably_damaging(1) TCGA-T2-A6WX-01 17 79205576 79205576 G C ENTHD2 Intron 0.19 TCGA-T2-A6WX-01 18 14763808 14763808 C T ANKRD30B Missense_Mutation p.A315V 0.18 tolerated(0.15) benign(0.196) TCGA-T2-A6WX-01 18 20964956 20964956 C G TMEM241 Missense_Mutation p.E119Q 0.22 tolerated(0.07) possibly_damaging(0.525) TCGA-T2-A6WX-01 18 3452158 3452158 C A TGIF1 Missense_Mutation p.P61T 0.24 deleterious_low_confidence(0) benign(0) TCGA-T2-A6WX-01 18 44409730 44409730 T C PIAS2 Missense_Mutation p.K435E 0.19 tolerated(1) benign(0.001) TCGA-T2-A6WX-01 18 50683801 50683801 G A DCC Missense_Mutation p.R446H 0.18 deleterious(0.01) benign(0.335) TCGA-T2-A6WX-01 18 7231853 7231853 C G LRRC30 Silent p.L239L 0.20 TCGA-T2-A6WX-01 18 9886265 9886265 G A TXNDC2 Missense_Mutation p.E32K 0.25 deleterious(0.02) possibly_damaging(0.519) TCGA-T2-A6WX-01 19 10602926 10602926 C T KEAP1 Missense_Mutation p.E218K 0.08 deleterious(0.01) benign(0.418) TCGA-T2-A6WX-01 19 12385822 12385822 C G ZNF44 Missense_Mutation p.D101H 0.12 deleterious(0) possibly_damaging(0.646) TCGA-T2-A6WX-01 19 14705357 14705357 G A CLEC17A Silent p.R102R 0.30 TCGA-T2-A6WX-01 19 20736542 20736542 C G ZNF737 Missense_Mutation p.E35Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-T2-A6WX-01 19 35831832 35831832 G C CD22 Missense_Mutation p.R433P 0.21 deleterious(0) probably_damaging(0.976) TCGA-T2-A6WX-01 19 42793500 42793500 G A CIC Missense_Mutation p.M434I 0.26 possibly_damaging(0.671) TCGA-T2-A6WX-01 19 42794083 42794083 G A CIC Missense_Mutation p.E482K 0.22 possibly_damaging(0.535) TCGA-T2-A6WX-01 19 42827747 42827747 C T TMEM145 Missense_Mutation p.P403S 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-T2-A6WX-01 19 5047575 5047575 C T KDM4B Missense_Mutation p.T174M 0.22 probably_damaging(0.994) TCGA-T2-A6WX-01 19 50795567 50795567 G A MYH14 Missense_Mutation p.R1726Q 0.30 tolerated(0.08) benign(0.358) TCGA-T2-A6WX-01 19 53889706 53889706 C G ZNF525 3'Flank 0.36 TCGA-T2-A6WX-01 19 55424251 55424251 G A NCR1 3'UTR 0.25 TCGA-T2-A6WX-01 19 58491078 58491078 G C ZNF606 Missense_Mutation p.Q324E 0.27 tolerated(0.06) benign(0.067) TCGA-T2-A6WX-01 19 8923829 8923829 C T ZNF558 Missense_Mutation p.R106K 0.38 tolerated(0.41) benign(0.024) TCGA-T2-A6WX-01 1 109191450 109191450 G C HENMT1 Nonsense_Mutation p.S307* 0.21 TCGA-T2-A6WX-01 1 145457071 145457071 C A POLR3GL Nonsense_Mutation p.E164* 0.12 TCGA-T2-A6WX-01 1 145530360 145530360 T C ITGA10 Missense_Mutation p.V192A 0.21 deleterious(0) possibly_damaging(0.829) TCGA-T2-A6WX-01 1 145567778 145567778 C T ANKRD35 3'UTR 0.23 TCGA-T2-A6WX-01 1 150307683 150307683 G C PRPF3 Missense_Mutation p.E336Q 0.16 tolerated(0.82) benign(0.021) TCGA-T2-A6WX-01 1 150321635 150321635 G A PRPF3 Missense_Mutation p.D616N 0.19 tolerated(0.15) benign(0.005) TCGA-T2-A6WX-01 1 151749034 151749034 C G TDRKH Missense_Mutation p.E309Q 0.29 deleterious(0) possibly_damaging(0.778) TCGA-T2-A6WX-01 1 151751715 151751715 C T TDRKH Missense_Mutation p.R142K 0.26 deleterious(0.01) probably_damaging(0.978) TCGA-T2-A6WX-01 1 156897772 156897772 A G LRRC71 Silent p.K324K 0.09 TCGA-T2-A6WX-01 1 161163759 161163759 C T ADAMTS4 Missense_Mutation p.R505H 0.16 tolerated(0.16) possibly_damaging(0.5) TCGA-T2-A6WX-01 1 186045667 186045667 G A HMCN1 Missense_Mutation p.E2800K 0.21 probably_damaging(0.994) TCGA-T2-A6WX-01 1 186823433 186823433 G C PLA2G4A 5'UTR 0.15 TCGA-T2-A6WX-01 1 200965341 200965341 C T KIF21B Missense_Mutation p.E754K 0.21 deleterious(0.02) benign(0.002) TCGA-T2-A6WX-01 1 202698874 202698874 G A KDM5B Silent p.I1486I 0.22 TCGA-T2-A6WX-01 1 202698923 202698923 G T KDM5B Nonsense_Mutation p.S1470* 0.25 TCGA-T2-A6WX-01 1 203188883 203188883 G C CHIT1 Missense_Mutation p.S275C 0.20 deleterious(0) probably_damaging(0.999) TCGA-T2-A6WX-01 1 204948662 204948662 C T NFASC Silent p.S717S 0.21 TCGA-T2-A6WX-01 1 206681310 206681310 C T RASSF5 Silent p.F125F 0.36 TCGA-T2-A6WX-01 1 228403320 228403320 G A OBSCN Missense_Mutation p.E629K 0.41 probably_damaging(0.998) TCGA-T2-A6WX-01 1 24019119 24019119 G A RPL11 Silent p.E9E 0.20 TCGA-T2-A6WX-01 1 248570073 248570073 C A OR2T1 Missense_Mutation p.P260T 0.17 deleterious(0) probably_damaging(0.996) TCGA-T2-A6WX-01 1 249152243 249152243 G A ZNF692 Intron 0.31 TCGA-T2-A6WX-01 1 26369037 26369037 G C SLC30A2 Intron 0.16 TCGA-T2-A6WX-01 1 28599144 28599144 C T SESN2 Missense_Mutation p.A197V 0.20 deleterious(0.03) probably_damaging(0.977) TCGA-T2-A6WX-01 1 39876601 39876601 C T KIAA0754 Nonsense_Mutation p.Q86* 0.20 TCGA-T2-A6WX-01 1 60314090 60314090 G T HOOK1 Nonsense_Mutation p.E345* 0.26 TCGA-T2-A6WX-01 1 66833738 66833738 A T PDE4B Missense_Mutation p.D551V 0.07 deleterious(0) probably_damaging(1) TCGA-T2-A6WX-01 1 85724231 85724231 C T C1orf52 Missense_Mutation p.E151K 0.23 deleterious(0.02) benign(0.187) TCGA-T2-A6WX-01 20 17614170 17614170 C T RRBP1 Missense_Mutation p.E416K 0.22 deleterious(0) possibly_damaging(0.486) TCGA-T2-A6WX-01 20 23345286 23345286 C T GZF1 Missense_Mutation p.S89L 0.26 deleterious(0.01) probably_damaging(1) TCGA-T2-A6WX-01 20 30155980 30155980 G A HM13 Silent p.Q378Q 0.16 TCGA-T2-A6WX-01 20 34219187 34219187 C T CPNE1 Intron 0.22 TCGA-T2-A6WX-01 20 57429313 57429313 G A GNAS Silent p.A331A 0.09 TCGA-T2-A6WX-01 20 61929272 61929272 C T COL20A1 Silent p.L31L 0.17 TCGA-T2-A6WX-01 20 9400478 9400478 G A PLCB4 Missense_Mutation p.M680I 0.22 deleterious(0) probably_damaging(0.993) TCGA-T2-A6WX-01 21 39086695 39086695 C T KCNJ6 Silent p.L255L 0.22 TCGA-T2-A6WX-01 21 47848407 47848407 G A PCNT Silent p.T2531T 0.31 TCGA-T2-A6WX-01 22 19119533 19119533 C T TSSK2 Silent p.Y207Y 0.23 TCGA-T2-A6WX-01 22 21349277 21349277 C T LZTR1 Missense_Mutation p.P635L 0.24 deleterious(0.01) benign(0.409) TCGA-T2-A6WX-01 22 23077464 23077464 G A IGLV2-18 Missense_Mutation p.D81N 0.26 tolerated_low_confidence(0.12) benign(0.013) TCGA-T2-A6WX-01 22 31059759 31059759 G A DUSP18 Missense_Mutation p.R78C 0.20 tolerated(0.23) benign(0.002) TCGA-T2-A6WX-01 22 31662976 31662976 C T LIMK2 Missense_Mutation p.H329Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-T2-A6WX-01 22 31850333 31850333 C T EIF4ENIF1 Missense_Mutation p.E437K 0.18 deleterious(0) probably_damaging(0.995) TCGA-T2-A6WX-01 22 36124944 36124944 G A APOL5 Silent p.%3D 0.21 TCGA-T2-A6WX-01 22 50302947 50302947 G C ALG12 Missense_Mutation p.P238R 0.18 probably_damaging(0.996) TCGA-T2-A6WX-01 2 136548432 136548432 C G LCT Missense_Mutation p.D1711H 0.19 deleterious(0.02) probably_damaging(0.936) TCGA-T2-A6WX-01 2 152992035 152992035 C T STAM2 Missense_Mutation p.E263K 0.28 deleterious(0.01) benign(0.259) TCGA-T2-A6WX-01 2 15758387 15758387 G C DDX1 Missense_Mutation p.R400T 0.15 deleterious(0) probably_damaging(1) TCGA-T2-A6WX-01 2 167760256 167760256 G T XIRP2 Missense_Mutation p.R88S 0.25 benign(0.117) TCGA-T2-A6WX-01 2 169791937 169791937 T C ABCB11 Splice_Site p.X939_splice 0.22 TCGA-T2-A6WX-01 2 179615321 179615321 G A TTN Intron 0.24 TCGA-T2-A6WX-01 2 198949559 198949559 C T PLCL1 Nonsense_Mutation p.R440* 0.17 TCGA-T2-A6WX-01 2 201845923 201845923 G A FAM126B 3'UTR 0.17 TCGA-T2-A6WX-01 2 201845943 201845943 G A FAM126B 3'UTR 0.14 TCGA-T2-A6WX-01 2 202131238 202131238 T C CASP8 Missense_Mutation p.I69T 0.41 deleterious(0) probably_damaging(0.991) TCGA-T2-A6WX-01 2 206608073 206608073 C T NRP2 Nonsense_Mutation p.Q480* 0.45 TCGA-T2-A6WX-01 2 238256999 238256999 C T COL6A3 Missense_Mutation p.G2320E 0.17 unknown(0) TCGA-T2-A6WX-01 2 238303539 238303539 C A COL6A3 Missense_Mutation p.A134S 0.48 benign(0.402) TCGA-T2-A6WX-01 2 239307468 239307468 G T TRAF3IP1 Missense_Mutation p.D662Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-T2-A6WX-01 2 241535885 241535885 C T CAPN10 Silent p.D476D 0.49 TCGA-T2-A6WX-01 2 27600565 27600565 C A ZNF513 Missense_Mutation p.Q491H 0.18 deleterious(0) benign(0.216) TCGA-T2-A6WX-01 2 45619 45619 G A FAM110C Missense_Mutation p.S256F 0.25 deleterious(0) probably_damaging(1) TCGA-T2-A6WX-01 2 45627 45627 G A FAM110C Silent p.V253V 0.26 TCGA-T2-A6WX-01 2 49216159 49216159 C T FSHR Missense_Mutation p.E161K 0.17 deleterious(0.03) benign(0.001) TCGA-T2-A6WX-01 2 74709080 74709080 G A CCDC142 Silent p.L295L 0.31 TCGA-T2-A6WX-01 3 101572436 101572436 C T NFKBIZ Missense_Mutation p.P356S 0.28 deleterious_low_confidence(0.03) benign(0.161) TCGA-T2-A6WX-01 3 113285336 113285336 C T SIDT1 Missense_Mutation p.R98C 0.19 deleterious(0) probably_damaging(1) TCGA-T2-A6WX-01 3 13860852 13860852 C G WNT7A Silent p.T213T 0.16 TCGA-T2-A6WX-01 3 154022616 154022616 C G DHX36 Missense_Mutation p.E372Q 0.18 deleterious(0.01) possibly_damaging(0.714) TCGA-T2-A6WX-01 3 154147314 154147314 T C GPR149 Missense_Mutation p.T31A 0.21 tolerated(0.19) benign(0.008) TCGA-T2-A6WX-01 3 167077760 167077760 C A ZBBX Silent p.V110V 0.22 TCGA-T2-A6WX-01 3 185655780 185655780 C T TRA2B 5'UTR 0.38 TCGA-T2-A6WX-01 3 192973554 192973554 T G HRASLS Missense_Mutation p.Y144D 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-T2-A6WX-01 3 38158095 38158095 C G DLEC1 Silent p.L1336L 0.17 TCGA-T2-A6WX-01 3 44945403 44945403 G C TGM4 Missense_Mutation p.W333C 0.16 deleterious(0) probably_damaging(1) TCGA-T2-A6WX-01 3 46939346 46939346 G A PTH1R Silent p.G105G 0.26 TCGA-T2-A6WX-01 3 49459941 49459941 G A AMT 5'UTR 0.29 TCGA-T2-A6WX-01 3 49847986 49847986 G C UBA7 Silent p.L477L 0.20 TCGA-T2-A6WX-01 3 58139360 58139360 G A FLNB Missense_Mutation p.G2240E 0.21 deleterious(0.01) probably_damaging(1) TCGA-T2-A6WX-01 3 64005073 64005073 C T PSMD6 Silent p.V132V 0.09 TCGA-T2-A6WX-01 4 109086270 109086270 C T LEF1 Missense_Mutation p.R88K 0.22 tolerated(0.11) benign(0.297) TCGA-T2-A6WX-01 4 109734867 109734867 G A COL25A1 3'UTR 0.31 TCGA-T2-A6WX-01 4 123336558 123336558 G C ADAD1 Missense_Mutation p.R425T 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-T2-A6WX-01 4 148463720 148463720 C G EDNRA Missense_Mutation p.Q412E 0.17 tolerated(0.38) benign(0.013) TCGA-T2-A6WX-01 4 151246980 151246980 C G LRBA Missense_Mutation p.R2489T 0.13 deleterious(0) probably_damaging(0.999) TCGA-T2-A6WX-01 4 156277025 156277025 G C MAP9 Missense_Mutation p.S378C 0.22 deleterious(0) probably_damaging(0.98) TCGA-T2-A6WX-01 4 156850844 156850844 C A CTSO Nonsense_Mutation p.E230* 0.25 TCGA-T2-A6WX-01 4 158255200 158255200 C A GRIA2 Silent p.T398T 0.18 TCGA-T2-A6WX-01 4 189060730 189060730 G C TRIML1 Silent p.L6L 0.19 TCGA-T2-A6WX-01 4 47788783 47788783 G A CORIN Missense_Mutation p.T123M 0.25 tolerated(0.14) benign(0.004) TCGA-T2-A6WX-01 5 112175771 112175771 G C APC Missense_Mutation p.E1494Q 0.15 probably_damaging(0.999) TCGA-T2-A6WX-01 5 129520070 129520070 G A CHSY3 Missense_Mutation p.R412H 0.20 tolerated(0.54) probably_damaging(0.963) TCGA-T2-A6WX-01 5 141357914 141357914 G A RNF14 Missense_Mutation p.R118H 0.23 tolerated(0.11) benign(0.317) TCGA-T2-A6WX-01 5 149754329 149754329 G A TCOF1 Silent p.Q411Q 0.25 TCGA-T2-A6WX-01 5 159437680 159437680 G A TTC1 Missense_Mutation p.D49N 0.23 tolerated_low_confidence(0.41) benign(0.003) TCGA-T2-A6WX-01 5 19483611 19483611 G A CDH18 Nonsense_Mutation p.Q561* 0.17 TCGA-T2-A6WX-01 5 65118740 65118740 G A NLN Silent p.P704P 0.20 TCGA-T2-A6WX-01 6 117128338 117128338 C A GPRC6A Missense_Mutation p.S177I 0.15 deleterious(0) probably_damaging(1) TCGA-T2-A6WX-01 6 125232130 125232130 G C RP11-510H23.1 RNA 0.21 TCGA-T2-A6WX-01 6 139241392 139241392 C G REPS1 Missense_Mutation p.K496N 0.20 tolerated(0.11) benign(0.007) TCGA-T2-A6WX-01 6 145095469 145095469 C T UTRN Silent p.I2867I 0.24 TCGA-T2-A6WX-01 6 18163094 18163094 T - KDM1B Frame_Shift_Del p.W82Gfs*82 0.15 TCGA-T2-A6WX-01 6 27806511 27806511 G T HIST1H2BN Missense_Mutation p.K24N 0.19 deleterious_low_confidence(0.01) benign(0.002) TCGA-T2-A6WX-01 6 31079539 31079539 G A C6orf15 Silent p.L199L 0.25 TCGA-T2-A6WX-01 6 32163492 32163492 G A NOTCH4 Missense_Mutation p.R1912C 0.17 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-T2-A6WX-01 6 36168550 36168550 G A BRPF3 Missense_Mutation p.E151K 0.20 deleterious(0.02) benign(0.034) TCGA-T2-A6WX-01 6 38942235 38942235 T C DNAH8 Missense_Mutation p.L4038P 0.23 probably_damaging(0.996) TCGA-T2-A6WX-01 6 7562886 7562886 C T DSP Missense_Mutation p.A200V 0.21 benign(0.001) TCGA-T2-A6WX-01 7 100283874 100283874 C G GIGYF1 Missense_Mutation p.E293Q 0.27 deleterious(0) unknown(0) TCGA-T2-A6WX-01 7 100777052 100777052 C G SERPINE1 Missense_Mutation p.F259L 0.19 tolerated(1) benign(0.007) TCGA-T2-A6WX-01 7 113522114 113522114 C T PPP1R3A Missense_Mutation p.E316K 0.20 deleterious(0.04) benign(0.082) TCGA-T2-A6WX-01 7 120387732 120387732 C G KCND2 Intron 0.15 TCGA-T2-A6WX-01 7 129046276 129046276 G A AHCYL2 Missense_Mutation p.E422K 0.15 deleterious(0.01) probably_damaging(0.949) TCGA-T2-A6WX-01 7 134853635 134853635 G A C7orf49 Missense_Mutation p.P14S 0.17 deleterious(0) probably_damaging(0.998) TCGA-T2-A6WX-01 7 150171384 150171384 G A GIMAP8 Missense_Mutation p.G323S 0.11 deleterious(0.02) probably_damaging(0.993) TCGA-T2-A6WX-01 7 150878259 150878259 C T ASB10 Missense_Mutation p.D291N 0.15 deleterious(0.03) benign(0.119) TCGA-T2-A6WX-01 7 38502594 38502594 C T AMPH Missense_Mutation p.R290Q 0.24 tolerated(0.32) probably_damaging(0.998) TCGA-T2-A6WX-01 7 4026875 4026875 C T SDK1 Silent p.H684H 0.25 TCGA-T2-A6WX-01 7 6150815 6150815 G T USP42 Missense_Mutation p.Q17H 0.18 deleterious(0) probably_damaging(0.999) TCGA-T2-A6WX-01 7 73245893 73245893 C T CLDN4 Missense_Mutation p.A121V 0.27 deleterious(0) probably_damaging(0.92) TCGA-T2-A6WX-01 7 73752876 73752876 G T CLIP2 Missense_Mutation p.D74Y 0.22 deleterious(0) possibly_damaging(0.713) TCGA-T2-A6WX-01 7 89749009 89749009 G A RP5-1121E10.2 Intron 0.21 TCGA-T2-A6WX-01 7 99097278 99097278 C T ZNF394 Missense_Mutation p.D147N 0.16 tolerated(0.24) benign(0.016) TCGA-T2-A6WX-01 7 99129384 99129384 G A ZKSCAN5 Missense_Mutation p.E678K 0.20 tolerated(1) probably_damaging(0.91) TCGA-T2-A6WX-01 7 99359861 99359861 C G CYP3A4 Missense_Mutation p.Q352H 0.23 deleterious(0.02) benign(0.169) TCGA-T2-A6WX-01 8 124553263 124553263 G C FBXO32 5'UTR 0.43 TCGA-T2-A6WX-01 8 130867886 130867886 G A FAM49B Missense_Mutation p.H137Y 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-T2-A6WX-01 8 1812538 1812538 G A ARHGEF10 Splice_Site p.X161_splice 0.30 TCGA-T2-A6WX-01 8 22473750 22473750 G A CCAR2 Missense_Mutation p.E612K 0.29 tolerated(0.54) benign(0.008) TCGA-T2-A6WX-01 8 42698316 42698316 G A THAP1 5'UTR 0.08 TCGA-T2-A6WX-01 8 67341423 67341423 G C RRS1 Missense_Mutation p.E19D 0.23 tolerated(0.17) benign(0.006) TCGA-T2-A6WX-01 8 85441762 85441762 G C RALYL Missense_Mutation p.R82T 0.17 deleterious(0.03) possibly_damaging(0.718) TCGA-T2-A6WX-01 9 114454229 114454229 G A C9orf84 Missense_Mutation p.S1279L 0.15 tolerated(0.08) benign(0.413) TCGA-T2-A6WX-01 9 117240818 117240818 C A DFNB31 Intron 0.18 TCGA-T2-A6WX-01 9 125751664 125751664 G C RABGAP1 Missense_Mutation p.E227Q 0.20 deleterious(0.01) benign(0.422) TCGA-T2-A6WX-01 9 136578218 136578218 C G SARDH Silent p.L393L 0.40 TCGA-T2-A6WX-01 9 22451624 22451624 C G DMRTA1 Missense_Mutation p.S410C 0.21 deleterious(0) probably_damaging(0.996) TCGA-T2-A6WX-01 9 38413282 38413282 G C IGFBPL1 Silent p.V213V 0.18 TCGA-T2-A6WX-01 9 80038820 80038820 C G GNA14 3'UTR 0.17 TCGA-T2-A6WX-01 X 101910480 101910480 G A GPRASP1 Missense_Mutation p.E547K 0.21 tolerated(0.31) benign(0.018) TCGA-T2-A6WX-01 X 111022220 111022220 T G TRPC5 Missense_Mutation p.N742T 0.17 deleterious(0) possibly_damaging(0.722) TCGA-T2-A6WX-01 X 118370284 118370284 C T PGRMC1 5'UTR 0.21 TCGA-T2-A6WX-01 X 119427904 119427904 G A TMEM255A Silent p.L68L 0.23 TCGA-T2-A6WX-01 X 140994102 140994102 G A MAGEC1 Silent p.Q304Q 0.14 TCGA-T2-A6WX-01 X 152991459 152991459 C T ABCD1 Silent p.I246I 0.26 TCGA-T2-A6WX-01 X 26157729 26157729 G A MAGEB18 Silent p.L209L 0.22 TCGA-T2-A6WX-01 X 32382754 32382754 G T DMD Missense_Mutation p.T1700K 0.18 benign(0.005) TCGA-T2-A6WX-01 X 37431383 37431383 C T LANCL3 Missense_Mutation p.T87M 0.10 tolerated(0.08) benign(0.436) TCGA-T2-A6WX-01 X 53560365 53560365 G C HUWE1 Missense_Mutation p.Q4344E 0.17 unknown(0) TCGA-T2-A6WX-01 X 65474920 65474920 C T HEPH Silent p.G923G 0.24 TCGA-T2-A6WZ-01 10 103897697 103897697 G A PPRC1 Missense_Mutation p.E82K 0.47 deleterious_low_confidence(0) benign(0.411) TCGA-T2-A6WZ-01 10 21875274 21875274 G T MLLT10 Missense_Mutation p.G98W 0.18 deleterious(0) possibly_damaging(0.886) TCGA-T2-A6WZ-01 10 3190616 3190616 C T PITRM1 Intron 0.45 TCGA-T2-A6WZ-01 10 68687519 68687519 G A LRRTM3 Missense_Mutation p.R282H 0.39 deleterious(0.04) possibly_damaging(0.86) TCGA-T2-A6WZ-01 10 84738818 84738818 G C NRG3 Missense_Mutation p.A509P 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-T2-A6WZ-01 11 63520082 63520082 C G RTN3 Missense_Mutation p.L948V 0.33 deleterious(0) probably_damaging(1) TCGA-T2-A6WZ-01 11 64881045 64881045 G C TM7SF2 Silent p.L194L 0.29 TCGA-T2-A6WZ-01 11 82571062 82571062 T C PRCP Missense_Mutation p.Y110C 0.10 deleterious(0) probably_damaging(1) TCGA-T2-A6WZ-01 12 100452833 100452833 G A UHRF1BP1L Missense_Mutation p.P741L 0.25 tolerated(0.62) benign(0) TCGA-T2-A6WZ-01 12 105593155 105593155 T G APPL2 Silent p.R293R 0.33 TCGA-T2-A6WZ-01 12 113346584 113346584 G A OAS1 Missense_Mutation p.G142R 0.19 tolerated(0.37) benign(0.005) TCGA-T2-A6WZ-01 12 118838508 118838508 C T SUDS3 Nonsense_Mutation p.R188* 0.24 TCGA-T2-A6WZ-01 12 57567641 57567641 C G LRP1 Missense_Mutation p.S1142C 0.20 possibly_damaging(0.711) TCGA-T2-A6WZ-01 13 100037518 100037518 G A UBAC2 Missense_Mutation p.D322N 0.10 tolerated(0.23) benign(0.194) TCGA-T2-A6WZ-01 13 102029346 102029346 C T NALCN Missense_Mutation p.R146Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-T2-A6WZ-01 13 41383822 41383823 - G SLC25A15 3'UTR 0.27 TCGA-T2-A6WZ-01 13 48941665 48941681 TCTTAAAAATAAAGATC - RB1 Frame_Shift_Del p.L326Rfs*9 0.31 TCGA-T2-A6WZ-01 14 23457183 23457183 G A C14orf93 Missense_Mutation p.R376C 0.43 deleterious_low_confidence(0) possibly_damaging(0.458) TCGA-T2-A6WZ-01 14 23535193 23535193 T C ACIN1 Missense_Mutation p.R822G 0.46 benign(0.071) TCGA-T2-A6WZ-01 14 74411446 74411446 G A FAM161B Missense_Mutation p.R236W 0.40 deleterious(0) possibly_damaging(0.827) TCGA-T2-A6WZ-01 15 24923764 24923764 G A NPAP1 Missense_Mutation p.G917E 0.04 deleterious(0.02) probably_damaging(0.994) TCGA-T2-A6WZ-01 15 40702833 40702833 A G IVD Missense_Mutation p.Y101C 0.09 deleterious(0) benign(0.196) TCGA-T2-A6WZ-01 15 52620117 52620117 G A MYO5A Silent p.L1523L 0.12 TCGA-T2-A6WZ-01 16 55361683 55361683 C A IRX6 Missense_Mutation p.A200E 0.37 deleterious(0) probably_damaging(1) TCGA-T2-A6WZ-01 16 84695244 84695244 C T KLHL36 Silent p.H452H 0.05 TCGA-T2-A6WZ-01 16 85689393 85689393 G A GSE1 Missense_Mutation p.G287S 0.35 deleterious(0.02) unknown(0) TCGA-T2-A6WZ-01 17 19288009 19288009 G C MFAP4 Silent p.S202S 0.07 TCGA-T2-A6WZ-01 17 40618496 40618496 G A ATP6V0A1 Missense_Mutation p.R56K 0.07 tolerated(0.19) benign(0.029) TCGA-T2-A6WZ-01 17 43473378 43473378 G A ARHGAP27 Missense_Mutation p.S445L 0.29 deleterious(0.01) benign(0.106) TCGA-T2-A6WZ-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.65 deleterious(0) probably_damaging(0.997) TCGA-T2-A6WZ-01 17 7578176 7578176 C A TP53 Splice_Site p.X224_splice 0.26 TCGA-T2-A6WZ-01 18 10471914 10471914 G A APCDD1 Silent p.Q210Q 0.21 TCGA-T2-A6WZ-01 18 59854641 59854641 G T KIAA1468 5'UTR 0.28 TCGA-T2-A6WZ-01 18 7231786 7231786 A T LRRC30 Missense_Mutation p.E217V 0.30 deleterious(0) possibly_damaging(0.894) TCGA-T2-A6WZ-01 19 11891446 11891446 A C ZNF441 Silent p.L269L 0.04 TCGA-T2-A6WZ-01 19 12883692 12883692 G A HOOK2 Missense_Mutation p.P97L 0.08 deleterious(0) probably_damaging(0.999) TCGA-T2-A6WZ-01 19 2918337 2918337 A T ZNF57 3'UTR 0.19 TCGA-T2-A6WZ-01 19 33651385 33651385 C T WDR88 Missense_Mutation p.R355W 0.30 deleterious(0.03) probably_damaging(0.97) TCGA-T2-A6WZ-01 19 37309554 37309554 G C ZNF790 Missense_Mutation p.C564W 0.06 deleterious(0) benign(0.001) TCGA-T2-A6WZ-01 19 3918841 3918841 G C ATCAY Missense_Mutation p.E347Q 0.16 tolerated_low_confidence(0.07) benign(0.004) TCGA-T2-A6WZ-01 19 55178164 55178164 C A LILRB4 Missense_Mutation p.N335K 0.39 deleterious(0.02) benign(0.016) TCGA-T2-A6WZ-01 1 115161057 115161057 T G DENND2C Missense_Mutation p.K425T 0.34 deleterious(0) probably_damaging(0.964) TCGA-T2-A6WZ-01 1 115161065 115161065 T A DENND2C Missense_Mutation p.R422S 0.32 deleterious(0.03) probably_damaging(0.964) TCGA-T2-A6WZ-01 1 16895631 16895631 A G NBPF1 Missense_Mutation p.S851P 0.09 tolerated(0.98) benign(0.07) TCGA-T2-A6WZ-01 1 172526904 172526904 A G SUCO Silent p.A234A 0.16 TCGA-T2-A6WZ-01 1 176526050 176526050 C T PAPPA2 Missense_Mutation p.R198C 0.17 deleterious(0.03) benign(0.38) TCGA-T2-A6WZ-01 1 182869026 182869026 C G SHCBP1L 3'UTR 0.41 TCGA-T2-A6WZ-01 1 183853897 183853897 G A RGL1 Missense_Mutation p.C294Y 0.31 deleterious(0) possibly_damaging(0.904) TCGA-T2-A6WZ-01 1 205307704 205307704 G A KLHDC8A Nonsense_Mutation p.R260* 0.27 TCGA-T2-A6WZ-01 1 215848734 215848734 C G USH2A Silent p.L4173L 0.16 TCGA-T2-A6WZ-01 1 233802400 233802400 G A KCNK1 Missense_Mutation p.V139I 0.35 tolerated(0.19) benign(0.061) TCGA-T2-A6WZ-01 1 243434354 243434354 A C SDCCAG8 Missense_Mutation p.M99L 0.22 tolerated(0.26) benign(0.003) TCGA-T2-A6WZ-01 1 31734445 31734445 T A SNRNP40 Missense_Mutation p.I319L 0.33 tolerated(0.38) benign(0.039) TCGA-T2-A6WZ-01 1 44064326 44064326 C T PTPRF Intron 0.31 TCGA-T2-A6WZ-01 1 45960644 45960644 G A CCDC163P 3'Flank 0.36 TCGA-T2-A6WZ-01 1 46211901 46211901 G T IPP Nonsense_Mutation p.Y61* 0.32 TCGA-T2-A6WZ-01 1 53927246 53927246 C T DMRTB1 Silent p.D226D 0.13 TCGA-T2-A6WZ-01 1 65157042 65157042 A G CACHD1 Missense_Mutation p.N1157S 0.33 tolerated(0.11) benign(0.264) TCGA-T2-A6WZ-01 1 67370926 67370926 C A WDR78 Silent p.L101L 0.20 TCGA-T2-A6WZ-01 1 71530665 71530665 T A ZRANB2 3'UTR 0.50 TCGA-T2-A6WZ-01 1 92445286 92445286 T G BRDT Missense_Mutation p.V420G 0.10 deleterious(0.04) benign(0.033) TCGA-T2-A6WZ-01 20 33891561 33891561 C A UQCC1 3'UTR 0.29 TCGA-T2-A6WZ-01 20 33891562 33891562 A C UQCC1 3'UTR 0.29 TCGA-T2-A6WZ-01 20 42331451 42331451 G A MYBL2 Missense_Mutation p.E425K 0.15 deleterious(0.01) probably_damaging(0.916) TCGA-T2-A6WZ-01 20 60908967 60908967 G C LAMA5 Silent p.T956T 0.21 TCGA-T2-A6WZ-01 21 19713857 19713857 A G TMPRSS15 Silent p.F479F 0.24 TCGA-T2-A6WZ-01 21 41741069 41741069 G A DSCAM Silent p.T204T 0.17 TCGA-T2-A6WZ-01 21 43857620 43857620 T C UBASH3A Silent p.G472G 0.20 TCGA-T2-A6WZ-01 22 22868258 22868258 C T ZNF280A 3'UTR 0.48 TCGA-T2-A6WZ-01 22 29837559 29837559 C G RFPL1 Silent p.A134A 0.08 TCGA-T2-A6WZ-01 22 39267494 39267494 G T CBX6 Missense_Mutation p.F79L 0.10 tolerated(0.55) benign(0.009) TCGA-T2-A6WZ-01 22 46709813 46709813 A T GTSE1 Missense_Mutation p.K318N 0.39 deleterious(0) probably_damaging(0.988) TCGA-T2-A6WZ-01 2 114482973 114482973 G C SLC35F5 Nonsense_Mutation p.S411* 0.07 TCGA-T2-A6WZ-01 2 128767876 128767876 G A SAP130 Missense_Mutation p.T305M 0.29 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-T2-A6WZ-01 2 130955941 130955941 T G TUBA3E 5'UTR 0.16 TCGA-T2-A6WZ-01 2 152222683 152222683 C T TNFAIP6 Missense_Mutation p.R116C 0.24 deleterious(0) probably_damaging(1) TCGA-T2-A6WZ-01 2 15615864 15615864 C G NBAS Missense_Mutation p.E430Q 0.31 tolerated(0.08) possibly_damaging(0.899) TCGA-T2-A6WZ-01 2 15760415 15760416 - T DDX1 Frame_Shift_Ins p.L431Ffs*23 0.18 TCGA-T2-A6WZ-01 2 179480379 179480379 G C TTN Nonsense_Mutation p.S16150* 0.06 TCGA-T2-A6WZ-01 2 179481676 179481676 G C TTN Missense_Mutation p.I15980M 0.12 TCGA-T2-A6WZ-01 2 179742596 179742596 C T CCDC141 Intron 0.29 TCGA-T2-A6WZ-01 2 180016043 180016043 G C SESTD1 Missense_Mutation p.L149V 0.22 deleterious(0.02) possibly_damaging(0.652) TCGA-T2-A6WZ-01 2 198365864 198365864 G A HSPE1-MOB4 Missense_Mutation p.E24K 0.07 deleterious_low_confidence(0.03) unknown(0) TCGA-T2-A6WZ-01 2 220472994 220472994 C T STK11IP Missense_Mutation p.S493L 0.24 tolerated(0.16) benign(0.006) TCGA-T2-A6WZ-01 2 32689715 32689715 A T BIRC6 Missense_Mutation p.I1694F 0.30 benign(0.056) TCGA-T2-A6WZ-01 2 43452555 43452556 - A ZFP36L2 Frame_Shift_Ins p.R130Sfs*344 0.32 TCGA-T2-A6WZ-01 2 70315336 70315336 C A PCBP1 Missense_Mutation p.S154Y 0.37 deleterious(0) probably_damaging(1) TCGA-T2-A6WZ-01 2 71629092 71629092 G C ZNF638 Missense_Mutation p.E902Q 0.16 deleterious(0.02) possibly_damaging(0.828) TCGA-T2-A6WZ-01 2 86371918 86371919 - T IMMT Frame_Shift_Ins p.S584Ifs*11 0.31 TCGA-T2-A6WZ-01 3 101284667 101284667 A T TRMT10C Missense_Mutation p.N348Y 0.22 deleterious(0.01) possibly_damaging(0.516) TCGA-T2-A6WZ-01 3 105269038 105269038 T C ALCAM Missense_Mutation p.V481A 0.19 tolerated(0.05) possibly_damaging(0.792) TCGA-T2-A6WZ-01 3 125313680 125313680 G T OSBPL11 5'UTR 0.11 TCGA-T2-A6WZ-01 3 1369145 1369145 G T CNTN6 Missense_Mutation p.R363I 0.21 deleterious(0) probably_damaging(1) TCGA-T2-A6WZ-01 3 164714392 164714392 G C SI Silent p.L1541L 0.06 TCGA-T2-A6WZ-01 3 178916824 178916824 G A PIK3CA Missense_Mutation p.V71I 0.04 tolerated(0.15) benign(0.444) TCGA-T2-A6WZ-01 3 3131906 3131906 G T IL5RA Intron 0.30 TCGA-T2-A6WZ-01 3 64600997 64600997 C G ADAMTS9 Missense_Mutation p.E1063D 0.38 deleterious(0.04) benign(0.104) TCGA-T2-A6WZ-01 4 104640856 104640856 C T TACR3 5'UTR 0.09 TCGA-T2-A6WZ-01 4 114279456 114279456 G A ANK2 Missense_Mutation p.V3228M 0.43 benign(0.005) TCGA-T2-A6WZ-01 4 123145812 123145812 G T KIAA1109 Missense_Mutation p.A925S 0.22 benign(0.293) TCGA-T2-A6WZ-01 4 15627093 15627093 C A FBXL5 Silent p.A544A 0.42 TCGA-T2-A6WZ-01 4 166986935 166986935 C T TLL1 Missense_Mutation p.S703F 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-T2-A6WZ-01 4 186329493 186329493 T C UFSP2 Missense_Mutation p.I310V 0.46 tolerated(0.11) benign(0.077) TCGA-T2-A6WZ-01 5 101794107 101794107 C A SLCO6A1 Missense_Mutation p.K370N 0.46 deleterious(0) probably_damaging(0.996) TCGA-T2-A6WZ-01 5 79773141 79773141 C G ZFYVE16 Missense_Mutation p.S1522C 0.07 deleterious(0) possibly_damaging(0.702) TCGA-T2-A6WZ-01 6 151936670 151936670 C A CCDC170 Silent p.L601L 0.16 TCGA-T2-A6WZ-01 6 152527354 152527354 T C SYNE1 Silent p.S7656S 0.30 TCGA-T2-A6WZ-01 6 163991840 163991840 G A QKI 3'UTR 0.22 TCGA-T2-A6WZ-01 6 26409904 26409904 G C BTN3A1 Missense_Mutation p.E287Q 0.09 tolerated(0.11) benign(0.059) TCGA-T2-A6WZ-01 6 32816571 32816571 G C TAP1 Nonsense_Mutation p.S535* 0.06 TCGA-T2-A6WZ-01 6 35211469 35211469 G A SCUBE3 Missense_Mutation p.D670N 0.05 tolerated(0.22) possibly_damaging(0.608) TCGA-T2-A6WZ-01 6 97580562 97580562 G T KLHL32 Missense_Mutation p.G547V 0.07 deleterious(0) benign(0.312) TCGA-T2-A6WZ-01 7 127014013 127014013 T C ZNF800 Silent p.K459K 0.21 TCGA-T2-A6WZ-01 7 141427199 141427199 C G WEE2 Silent p.L496L 0.32 TCGA-T2-A6WZ-01 7 143016950 143016950 C T CLCN1 Missense_Mutation p.H95Y 0.27 tolerated(0.65) benign(0.397) TCGA-T2-A6WZ-01 7 150499411 150499411 G A TMEM176A Missense_Mutation p.V95M 0.19 tolerated(0.05) possibly_damaging(0.823) TCGA-T2-A6WZ-01 7 154863064 154863064 G A HTR5A Missense_Mutation p.R152H 0.35 deleterious(0.03) benign(0.02) TCGA-T2-A6WZ-01 7 154863065 154863065 C A HTR5A Silent p.R152R 0.35 TCGA-T2-A6WZ-01 7 30963279 30963279 G A AQP1 3'UTR 0.14 TCGA-T2-A6WZ-01 7 44246048 44246048 A G YKT6 Silent p.E84E 0.28 TCGA-T2-A6WZ-01 7 56007563 56007563 A G ZNF713 Missense_Mutation p.K386R 0.29 deleterious(0.01) probably_damaging(0.956) TCGA-T2-A6WZ-01 8 143999025 143999025 T C CYP11B2 Missense_Mutation p.I78V 0.31 deleterious(0) probably_damaging(0.999) TCGA-T2-A6WZ-01 8 145001196 145001196 G A PLEC Silent p.S1435S 0.35 TCGA-T2-A6WZ-01 8 145746372 145746372 G A LRRC14 Missense_Mutation p.R331Q 0.27 tolerated(1) benign(0) TCGA-T2-A6WZ-01 9 104499572 104499572 C T GRIN3A Silent p.R230R 0.44 TCGA-T2-A6WZ-01 9 135205857 135205857 T C SETX Silent p.P376P 0.06 TCGA-T2-A6WZ-01 9 136535737 136535737 G A SARDH Missense_Mutation p.R822C 0.33 tolerated(0.11) benign(0.013) TCGA-T2-A6WZ-01 9 139903015 139903015 C T ABCA2 Silent p.P2376P 0.19 TCGA-T2-A6WZ-01 X 110406177 110406177 C G PAK3 Missense_Mutation p.P204R 0.52 tolerated(0.09) possibly_damaging(0.481) TCGA-T2-A6WZ-01 X 149100951 149100951 G C CXorf40B Silent p.P96P 0.55 TCGA-T2-A6WZ-01 X 32613897 32613897 C G DMD Missense_Mutation p.A527P 0.09 possibly_damaging(0.721) TCGA-T2-A6WZ-01 X 39933063 39933063 G A BCOR Silent p.P512P 0.06 TCGA-T2-A6WZ-01 X 50350953 50350953 G A SHROOM4 Silent p.I1063I 0.20 TCGA-T2-A6X0-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.49 TCGA-T2-A6X0-01 11 102661499 102661499 G T MMP1 Missense_Mutation p.P412H 0.51 deleterious(0) probably_damaging(1) TCGA-T2-A6X0-01 11 64514211 64514211 T C PYGM Missense_Mutation p.T817A 0.32 tolerated(0.14) benign(0.243) TCGA-T2-A6X0-01 11 66288716 66288716 G A BBS1 Intron 0.34 TCGA-T2-A6X0-01 11 67186371 67186371 G A CARNS1 Missense_Mutation p.R170H 0.30 deleterious(0) probably_damaging(1) TCGA-T2-A6X0-01 11 8132425 8132425 G A RIC3 Silent p.D310D 0.40 TCGA-T2-A6X0-01 11 92577212 92577212 C A FAT3 Missense_Mutation p.T3560N 0.49 probably_damaging(0.987) TCGA-T2-A6X0-01 12 100732394 100732394 C G SCYL2 Missense_Mutation p.T745S 0.14 tolerated(0.59) benign(0) TCGA-T2-A6X0-01 12 120128245 120128245 C T CIT Missense_Mutation p.R1966Q 0.17 deleterious_low_confidence(0.01) probably_damaging(0.943) TCGA-T2-A6X0-01 12 40631814 40631814 C T LRRK2 Silent p.F160F 0.22 TCGA-T2-A6X0-01 13 32972303 32972303 C T BRCA2 Missense_Mutation p.S3218F 0.07 tolerated(0.07) probably_damaging(0.962) TCGA-T2-A6X0-01 13 37453769 37453769 T C SMAD9 Missense_Mutation p.R20G 0.53 deleterious(0.03) possibly_damaging(0.844) TCGA-T2-A6X0-01 13 67802212 67802212 C A PCDH9 Missense_Mutation p.D121Y 0.07 deleterious(0.01) possibly_damaging(0.905) TCGA-T2-A6X0-01 14 69345763 69345763 G A ACTN1 Silent p.P768P 0.38 TCGA-T2-A6X0-01 14 88658749 88658749 C T KCNK10 Silent p.K229K 0.28 TCGA-T2-A6X0-01 14 88892837 88892837 C T SPATA7 Missense_Mutation p.R212W 0.25 deleterious(0) probably_damaging(0.994) TCGA-T2-A6X0-01 16 2228601 2228601 C T CASKIN1 Missense_Mutation p.G1416S 0.32 unknown(0) TCGA-T2-A6X0-01 16 57775607 57775607 G A KATNB1 Missense_Mutation p.V17I 0.06 tolerated(0.16) benign(0.011) TCGA-T2-A6X0-01 16 81236230 81236230 G A PKD1L2 Nonsense_Mutation p.R340* 0.33 TCGA-T2-A6X0-01 17 46628230 46628230 C T HOXB3 Silent p.S254S 0.38 TCGA-T2-A6X0-01 17 72915940 72915940 G A USH1G Missense_Mutation p.R331C 0.28 deleterious(0.04) benign(0.216) TCGA-T2-A6X0-01 18 25572701 25572701 C T CDH2 Missense_Mutation p.R421K 0.32 tolerated(0.23) benign(0.022) TCGA-T2-A6X0-01 18 31319923 31319923 T G ASXL3 Missense_Mutation p.I852S 0.22 benign(0.019) TCGA-T2-A6X0-01 18 67231825 67231825 C A DOK6 Missense_Mutation p.H57N 0.32 tolerated(0.27) benign(0.093) TCGA-T2-A6X0-01 19 12088965 12088965 G T ZNF763 Nonsense_Mutation p.E79* 0.33 TCGA-T2-A6X0-01 19 15276813 15276813 C T NOTCH3 Missense_Mutation p.A1818T 0.29 tolerated(0.07) probably_damaging(0.97) TCGA-T2-A6X0-01 19 18368502 18368502 C G KIAA1683 Missense_Mutation p.A1198P 0.24 deleterious(0.02) benign(0.272) TCGA-T2-A6X0-01 19 50154615 50154615 C T SCAF1 Silent p.D323D 0.48 TCGA-T2-A6X0-01 19 50365330 50365330 C T PNKP Missense_Mutation p.V387M 0.17 deleterious(0.01) possibly_damaging(0.793) TCGA-T2-A6X0-01 19 52495962 52495962 G A ZNF615 3'UTR 0.29 TCGA-T2-A6X0-01 19 56473487 56473487 T C NLRP8 Silent p.F699F 0.28 TCGA-T2-A6X0-01 19 8550898 8550898 T C HNRNPM Missense_Mutation p.M529T 0.47 deleterious(0) benign(0.096) TCGA-T2-A6X0-01 1 158585173 158585173 C T SPTA1 Silent p.Q2207Q 0.38 TCGA-T2-A6X0-01 1 161518268 161518268 T C FCGR3A Missense_Mutation p.R124G 0.04 deleterious(0) possibly_damaging(0.668) TCGA-T2-A6X0-01 1 16890531 16890531 G A NBPF1 Silent p.I1109I 0.09 TCGA-T2-A6X0-01 1 220298619 220298619 G A IARS2 Missense_Mutation p.G561S 0.16 deleterious(0.01) possibly_damaging(0.7) TCGA-T2-A6X0-01 1 28240999 28240999 G C RPA2 5'UTR 0.52 TCGA-T2-A6X0-01 1 44475695 44475695 G A SLC6A9 Silent p.F160F 0.62 TCGA-T2-A6X0-01 1 45288785 45288785 C T PTCH2 Missense_Mutation p.V1105M 0.19 deleterious(0.05) benign(0.145) TCGA-T2-A6X0-01 1 66723492 66723492 G A PDE4B Missense_Mutation p.R177Q 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-T2-A6X0-01 20 35075162 35075162 G A DLGAP4 Silent p.A490A 0.37 TCGA-T2-A6X0-01 20 36012596 36012596 C T SRC Missense_Mutation p.R14W 0.08 tolerated_low_confidence(0.16) probably_damaging(0.997) TCGA-T2-A6X0-01 20 36850871 36850871 C T KIAA1755 Silent p.L799L 0.35 TCGA-T2-A6X0-01 20 43246999 43246999 G A PKIG Silent p.S75S 0.34 TCGA-T2-A6X0-01 20 44003749 44003749 C T TP53TG5 Missense_Mutation p.R233H 0.33 deleterious(0) probably_damaging(0.999) TCGA-T2-A6X0-01 20 62577277 62577277 C T UCKL1 Missense_Mutation p.D155N 0.34 deleterious(0) probably_damaging(1) TCGA-T2-A6X0-01 22 46859707 46859707 G A CELSR1 Silent p.C1360C 0.40 TCGA-T2-A6X0-01 22 50693901 50693901 C T MAPK12 Silent p.L277L 0.30 TCGA-T2-A6X0-01 2 179588987 179588987 C A TTN Missense_Mutation p.D7039Y 0.17 TCGA-T2-A6X0-01 2 192250645 192250645 G C MYO1B Missense_Mutation p.E463D 0.34 deleterious(0.01) possibly_damaging(0.838) TCGA-T2-A6X0-01 2 210565034 210565034 T A MAP2 Missense_Mutation p.V1519E 0.36 deleterious(0.01) benign(0.174) TCGA-T2-A6X0-01 2 219341590 219341590 G A USP37 Silent p.N672N 0.05 TCGA-T2-A6X0-01 2 28805371 28805371 A G PLB1 Missense_Mutation p.R578G 0.18 deleterious(0.01) benign(0.155) TCGA-T2-A6X0-01 2 46605872 46605872 T A EPAS1 Missense_Mutation p.M507K 0.05 tolerated(0.25) benign(0.224) TCGA-T2-A6X0-01 3 11744452 11744452 G A VGLL4 Silent p.D19D 0.30 TCGA-T2-A6X0-01 3 134670849 134670849 A G EPHB1 Missense_Mutation p.T254A 0.06 tolerated(0.34) benign(0.033) TCGA-T2-A6X0-01 3 138665391 138665391 C T FOXL2 Silent p.S58S 0.15 TCGA-T2-A6X0-01 3 184102332 184102332 G A CHRD Missense_Mutation p.G483D 0.16 deleterious(0) probably_damaging(1) TCGA-T2-A6X0-01 3 195491938 195491938 G A MUC4 Silent p.G4618G 0.12 TCGA-T2-A6X0-01 3 87027679 87027679 G A VGLL3 Nonsense_Mutation p.R134* 0.33 TCGA-T2-A6X0-01 4 104080281 104080281 A C CENPE Missense_Mutation p.F829L 0.27 benign(0.002) TCGA-T2-A6X0-01 4 106601125 106601125 A G ARHGEF38 3'UTR 0.14 TCGA-T2-A6X0-01 4 46334667 46334667 C T GABRA2 Missense_Mutation p.V74M 0.45 deleterious(0.01) possibly_damaging(0.879) TCGA-T2-A6X0-01 4 56291574 56291574 G A TMEM165 Silent p.A310A 0.27 TCGA-T2-A6X0-01 5 156376739 156376739 G A TIMD4 Missense_Mutation p.S228L 0.35 deleterious(0.03) benign(0.002) TCGA-T2-A6X0-01 5 172410760 172410760 G A ATP6V0E1 5'UTR 0.21 TCGA-T2-A6X0-01 6 165827146 165827146 G A PDE10A Missense_Mutation p.T374M 0.18 deleterious(0) probably_damaging(1) TCGA-T2-A6X0-01 6 46977492 46977492 G A GPR110 Missense_Mutation p.T560M 0.28 tolerated(0.48) benign(0.021) TCGA-T2-A6X0-01 7 100681342 100681342 T C MUC17 Silent p.P2215P 0.04 TCGA-T2-A6X0-01 7 150737925 150737925 C T ABCB8 Missense_Mutation p.R467C 0.33 deleterious(0) probably_damaging(1) TCGA-T2-A6X0-01 7 157046705 157046705 G A UBE3C Missense_Mutation p.A918T 0.09 tolerated(0.05) possibly_damaging(0.707) TCGA-T2-A6X0-01 7 6000472 6000472 C T RSPH10B Silent p.P141P 0.79 TCGA-T2-A6X0-01 7 98524941 98524941 G A TRRAP Missense_Mutation p.A1043T 0.23 benign(0.087) TCGA-T2-A6X0-01 8 139163803 139163803 A G FAM135B Missense_Mutation p.V972A 0.36 tolerated_low_confidence(0.79) benign(0) TCGA-T2-A6X0-01 9 123620499 123620499 C T PHF19 Missense_Mutation p.R489Q 0.21 tolerated(0.23) benign(0.011) TCGA-T2-A6X0-01 9 132889813 132889813 G A GPR107 Missense_Mutation p.A518T 0.05 tolerated(0.79) benign(0.075) TCGA-T2-A6X0-01 9 33036573 33036573 C T DNAJA1 Nonsense_Mutation p.R254* 0.17 TCGA-T2-A6X0-01 9 37440997 37440999 AGA - ZBTB5 In_Frame_Del p.F517del 0.35 TCGA-T2-A6X2-01 10 101646294 101646294 C G DNMBP Missense_Mutation p.K1127N 0.24 deleterious(0) probably_damaging(0.999) TCGA-T2-A6X2-01 10 102766944 102766944 C G LZTS2 3'UTR 0.36 TCGA-T2-A6X2-01 10 114172956 114172956 G C ACSL5 Missense_Mutation p.R381T 0.26 deleterious(0.01) benign(0.363) TCGA-T2-A6X2-01 10 115618363 115618363 C T NHLRC2 Silent p.F85F 0.29 TCGA-T2-A6X2-01 10 124909241 124909241 G A HMX2 Missense_Mutation p.E142K 0.43 tolerated(0.32) benign(0.037) TCGA-T2-A6X2-01 10 135094861 135094861 G C TUBGCP2 Nonsense_Mutation p.S858* 0.37 TCGA-T2-A6X2-01 10 30611428 30611428 G C MTPAP Missense_Mutation p.P371A 0.35 deleterious(0.01) probably_damaging(0.94) TCGA-T2-A6X2-01 10 35360215 35360215 C G CUL2 Missense_Mutation p.D30H 0.33 deleterious(0.02) probably_damaging(0.911) TCGA-T2-A6X2-01 10 60029025 60029025 G T CISD1 5'UTR 0.26 TCGA-T2-A6X2-01 10 75542190 75542190 G C CHCHD1 Silent p.A78A 0.19 TCGA-T2-A6X2-01 10 90768721 90768721 C G FAS Missense_Mutation p.S137C 0.30 deleterious(0.04) probably_damaging(0.971) TCGA-T2-A6X2-01 10 90770295 90770295 G C FAS Splice_Site p.X148_splice 0.30 TCGA-T2-A6X2-01 10 91518641 91518641 T G KIF20B Splice_Site p.X1520_splice 0.36 TCGA-T2-A6X2-01 10 95169456 95169456 G A MYOF Silent p.D158D 0.03 TCGA-T2-A6X2-01 11 101775542 101775542 C T ANGPTL5 Intron 0.37 TCGA-T2-A6X2-01 11 113701592 113701592 C T USP28 Missense_Mutation p.E303K 0.31 deleterious(0.02) benign(0.219) TCGA-T2-A6X2-01 11 118007700 118007700 C T SCN4B 3'UTR 0.22 TCGA-T2-A6X2-01 11 118370622 118370622 G T KMT2A Missense_Mutation p.G2051V 0.23 probably_damaging(1) TCGA-T2-A6X2-01 11 124266389 124266389 G C OR8B3 Missense_Mutation p.L287V 0.33 deleterious_low_confidence(0.04) benign(0.345) TCGA-T2-A6X2-01 11 124626548 124626548 C G ESAM Missense_Mutation p.E114Q 0.26 tolerated(0.76) benign(0.006) TCGA-T2-A6X2-01 11 128332248 128332248 C T ETS1 3'UTR 0.31 TCGA-T2-A6X2-01 11 133790076 133790076 G A IGSF9B Missense_Mutation p.R1182W 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-T2-A6X2-01 11 1463797 1463797 C T BRSK2 Missense_Mutation p.S210F 0.22 deleterious(0) probably_damaging(0.992) TCGA-T2-A6X2-01 11 18354640 18354640 G C GTF2H1 Missense_Mutation p.E7Q 0.28 tolerated(0.07) benign(0.163) TCGA-T2-A6X2-01 11 2443494 2443494 C G TRPM5 Missense_Mutation p.E59Q 0.31 tolerated(0.48) possibly_damaging(0.628) TCGA-T2-A6X2-01 11 35454378 35454378 G A PAMR1 Silent p.I580I 0.19 TCGA-T2-A6X2-01 11 404318 404318 C T PKP3 Missense_Mutation p.R785W 0.23 deleterious(0) probably_damaging(0.928) TCGA-T2-A6X2-01 11 48346918 48346918 G T OR4C3 Silent p.V142V 0.07 TCGA-T2-A6X2-01 11 55541412 55541412 G C OR5D13 Missense_Mutation p.D167H 0.27 tolerated(0.06) benign(0) TCGA-T2-A6X2-01 11 57087578 57087578 C G TNKS1BP1 Missense_Mutation p.E235Q 0.18 deleterious(0.04) possibly_damaging(0.643) TCGA-T2-A6X2-01 11 58207325 58207325 G A OR5B12 Silent p.F100F 0.27 TCGA-T2-A6X2-01 11 59406558 59406558 C G PATL1 Missense_Mutation p.D752H 0.32 deleterious(0) probably_damaging(0.973) TCGA-T2-A6X2-01 11 61131945 61131945 C G TMEM138 Nonsense_Mutation p.S28* 0.33 TCGA-T2-A6X2-01 11 614918 614918 C G IRF7 Missense_Mutation p.W104C 0.23 deleterious(0) probably_damaging(1) TCGA-T2-A6X2-01 11 62295105 62295105 C A AHNAK Nonsense_Mutation p.E2262* 0.29 TCGA-T2-A6X2-01 11 62341333 62341333 G - EEF1G 5'UTR 0.22 TCGA-T2-A6X2-01 11 62558364 62558364 G C TMEM223 Missense_Mutation p.L114V 0.22 tolerated(0.14) benign(0.022) TCGA-T2-A6X2-01 11 62559933 62559933 G C NXF1 3'UTR 0.25 TCGA-T2-A6X2-01 11 62561766 62561766 G A NXF1 Missense_Mutation p.S575F 0.31 deleterious(0.02) benign(0.242) TCGA-T2-A6X2-01 11 6260439 6260439 G A CNGA4 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0.04) benign(0.006) TCGA-T2-A6X2-01 11 6291536 6291536 C T CCKBR Missense_Mutation p.R208C 0.28 tolerated(0.09) possibly_damaging(0.717) TCGA-T2-A6X2-01 11 63396710 63396710 G A ATL3 3'UTR 0.31 TCGA-T2-A6X2-01 11 64108646 64108646 C G CCDC88B Silent p.L128L 0.29 TCGA-T2-A6X2-01 11 64335074 64335074 C G SLC22A11 Missense_Mutation p.F354L 0.32 deleterious(0.04) benign(0.443) TCGA-T2-A6X2-01 11 65632751 65632751 G A MUS81 Missense_Mutation p.E488K 0.26 deleterious(0.01) benign(0.081) TCGA-T2-A6X2-01 11 66611085 66611085 C G RCE1 Silent p.L53L 0.46 TCGA-T2-A6X2-01 11 70319250 70319250 C T SHANK2 Silent p.A1759A 0.32 TCGA-T2-A6X2-01 11 71724648 71724668 CCTCCTCCCGGAGGCTCTGCA - NUMA1 In_Frame_Del p.V1294_E1300del 0.09 TCGA-T2-A6X2-01 11 71725139 71725139 T G NUMA1 Missense_Mutation p.Q1137P 0.23 benign(0.212) TCGA-T2-A6X2-01 11 74559187 74559187 C T XRRA1 Silent p.K559K 0.31 TCGA-T2-A6X2-01 11 74716673 74716673 G A NEU3 Silent p.V174V 0.28 TCGA-T2-A6X2-01 11 82642834 82642834 G A C11orf82 Missense_Mutation p.D152N 0.27 tolerated(0.26) benign(0.006) TCGA-T2-A6X2-01 12 111072531 111072531 G A TCTN1 Missense_Mutation p.E257K 0.19 tolerated(0.49) benign(0.013) TCGA-T2-A6X2-01 12 111745029 111745029 G A CUX2 Silent p.Q359Q 0.41 TCGA-T2-A6X2-01 12 122966509 122966509 G C ZCCHC8 Missense_Mutation p.F286L 0.41 deleterious(0) possibly_damaging(0.831) TCGA-T2-A6X2-01 12 130935880 130935880 C T RIMBP2 Missense_Mutation p.E105K 0.35 tolerated(0.07) benign(0.005) TCGA-T2-A6X2-01 12 18234026 18234026 C G RERGL 3'UTR 0.31 TCGA-T2-A6X2-01 12 247960 247960 C T IQSEC3 Silent p.H477H 0.26 TCGA-T2-A6X2-01 12 2702407 2702407 G A CACNA1C Missense_Mutation p.M853I 0.33 tolerated(0.75) benign(0.008) TCGA-T2-A6X2-01 12 44781846 44781846 G A TMEM117 Silent p.L312L 0.25 TCGA-T2-A6X2-01 12 46246147 46246147 G A ARID2 Missense_Mutation p.R1414K 0.34 tolerated_low_confidence(0.22) benign(0.012) TCGA-T2-A6X2-01 12 49934893 49934893 G A KCNH3 Silent p.E96E 0.29 TCGA-T2-A6X2-01 12 50513924 50513924 G A COX14 Missense_Mutation p.R33Q 0.37 tolerated(0.07) benign(0.01) TCGA-T2-A6X2-01 12 55524474 55524474 T A OR9K2 Missense_Mutation p.L308M 0.30 deleterious(0.01) probably_damaging(1) TCGA-T2-A6X2-01 12 56975246 56975246 G A RBMS2 Missense_Mutation p.G229E 0.25 deleterious(0.02) probably_damaging(0.935) TCGA-T2-A6X2-01 12 57115183 57115183 G T NACA Missense_Mutation p.T44N 0.33 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-T2-A6X2-01 12 57490286 57490294 CAAGTGTCC - STAT6 3'UTR 0.29 TCGA-T2-A6X2-01 12 57857855 57857855 G A GLI1 Silent p.E58E 0.24 TCGA-T2-A6X2-01 12 6635459 6635459 C G NCAPD2 Missense_Mutation p.L830V 0.28 tolerated(0.28) benign(0.003) TCGA-T2-A6X2-01 12 69140072 69140072 G A SLC35E3 5'UTR 0.27 TCGA-T2-A6X2-01 12 6952860 6952860 G A GNB3 Silent p.T165T 0.29 TCGA-T2-A6X2-01 12 7055822 7055822 G A PTPN6 5'Flank 0.41 TCGA-T2-A6X2-01 12 70953303 70953303 C G PTPRB Missense_Mutation p.E1512Q 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-T2-A6X2-01 12 81768511 81768511 C G PPFIA2 Missense_Mutation p.E390Q 0.20 deleterious(0.02) probably_damaging(0.978) TCGA-T2-A6X2-01 12 91546954 91546954 G A DCN Missense_Mutation p.S222F 0.27 deleterious(0) probably_damaging(0.958) TCGA-T2-A6X2-01 12 9845688 9845688 C T CLEC2D Nonsense_Mutation p.R174* 0.26 TCGA-T2-A6X2-01 13 103275226 103275226 G C TPP2 Splice_Site p.X207_splice 0.29 TCGA-T2-A6X2-01 13 103524680 103524680 C G BIVM-ERCC5 Silent p.L1363L 0.21 TCGA-T2-A6X2-01 13 108861753 108861753 C T LIG4 Missense_Mutation p.E622K 0.26 tolerated(0.16) benign(0.001) TCGA-T2-A6X2-01 13 109318415 109318415 G A MYO16 Silent p.L48L 0.39 TCGA-T2-A6X2-01 13 113530244 113530244 G C ATP11A Missense_Mutation p.E1106Q 0.26 tolerated(0.31) benign(0.008) TCGA-T2-A6X2-01 13 23909724 23909724 G A SACS Missense_Mutation p.S2764L 0.28 probably_damaging(0.992) TCGA-T2-A6X2-01 13 25828547 25828547 G C MTMR6 Missense_Mutation p.S374C 0.21 deleterious(0) probably_damaging(0.991) TCGA-T2-A6X2-01 13 27241766 27241766 G C WASF3 Missense_Mutation p.Q127H 0.25 tolerated(0.35) benign(0.401) TCGA-T2-A6X2-01 13 32937584 32937584 C T BRCA2 Nonsense_Mutation p.Q2749* 0.34 TCGA-T2-A6X2-01 13 41826842 41826842 C T MTRF1 Silent p.Q212Q 0.20 TCGA-T2-A6X2-01 14 106494293 106494293 C G IGHV2-5 Missense_Mutation p.E67Q 0.27 deleterious(0.04) possibly_damaging(0.571) TCGA-T2-A6X2-01 14 106877714 106877714 G C IGHV4-39 Missense_Mutation p.R94G 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-T2-A6X2-01 14 21870633 21870633 C G CHD8 Missense_Mutation p.Q1248H 0.24 deleterious(0) benign(0.131) TCGA-T2-A6X2-01 14 22133626 22133626 C T OR4E2 Silent p.A110A 0.27 TCGA-T2-A6X2-01 14 24546882 24546882 C T CPNE6 Silent p.I539I 0.30 TCGA-T2-A6X2-01 14 24589040 24589040 G A DCAF11 Missense_Mutation p.D343N 0.33 tolerated(0.36) benign(0.032) TCGA-T2-A6X2-01 14 24606931 24606931 C T PSME1 Silent p.N105N 0.27 TCGA-T2-A6X2-01 14 24710487 24710487 G A TINF2 Silent p.L144L 0.29 TCGA-T2-A6X2-01 14 25102257 25102257 C T GZMB Missense_Mutation p.G23R 0.26 deleterious(0.03) probably_damaging(0.959) TCGA-T2-A6X2-01 14 29237439 29237439 C T FOXG1 Silent p.H318H 0.33 TCGA-T2-A6X2-01 14 33147646 33147646 C G AKAP6 Missense_Mutation p.H954D 0.28 deleterious(0.02) benign(0.23) TCGA-T2-A6X2-01 14 36143916 36143916 C T RALGAPA1 Splice_Site p.X1036_splice 0.21 TCGA-T2-A6X2-01 14 62229286 62229286 G A SNAPC1 Missense_Mutation p.M36I 0.30 deleterious(0.03) benign(0.139) TCGA-T2-A6X2-01 14 64988277 64988277 G C ZBTB1 Missense_Mutation p.E19Q 0.35 deleterious(0) probably_damaging(0.996) TCGA-T2-A6X2-01 14 65197600 65197600 C T PLEKHG3 Missense_Mutation p.S161L 0.38 deleterious(0) possibly_damaging(0.669) TCGA-T2-A6X2-01 14 65216069 65216069 C A SPTB Missense_Mutation p.K2314N 0.26 deleterious(0.02) benign(0.244) TCGA-T2-A6X2-01 14 69061264 69061264 C T RAD51B Nonsense_Mutation p.Q367* 0.21 TCGA-T2-A6X2-01 14 80328176 80328176 C T NRXN3 Nonsense_Mutation p.Q1019* 0.33 TCGA-T2-A6X2-01 14 88893002 88893002 G C SPATA7 Missense_Mutation p.D267H 0.27 deleterious(0.04) benign(0.067) TCGA-T2-A6X2-01 15 28370247 28370247 G T HERC2 Missense_Mutation p.Q4299K 0.22 possibly_damaging(0.52) TCGA-T2-A6X2-01 15 31202864 31202864 C G FAN1 Missense_Mutation p.P475A 0.21 deleterious(0.02) possibly_damaging(0.871) TCGA-T2-A6X2-01 15 32929088 32929088 C T ARHGAP11A Missense_Mutation p.S705L 0.31 tolerated(0.19) benign(0.008) TCGA-T2-A6X2-01 15 33954828 33954828 G C RYR3 Silent p.L1699L 0.29 TCGA-T2-A6X2-01 15 38632026 38632026 C G SPRED1 Nonsense_Mutation p.S171* 0.31 TCGA-T2-A6X2-01 15 43818025 43818025 G A MAP1A Missense_Mutation p.E1452K 0.27 benign(0.001) TCGA-T2-A6X2-01 15 45007673 45007674 AA - B2M Frame_Shift_Del p.N41Ffs*15 0.29 TCGA-T2-A6X2-01 15 45007842 45007842 G A B2M Missense_Mutation p.E97K 0.33 tolerated(0.52) benign(0.023) TCGA-T2-A6X2-01 15 50903317 50903317 C T TRPM7 Silent p.L751L 0.29 TCGA-T2-A6X2-01 15 50903487 50903487 C G TRPM7 Missense_Mutation p.E695Q 0.29 deleterious(0.02) benign(0.322) TCGA-T2-A6X2-01 15 52561977 52561977 C G MYO5C Missense_Mutation p.E305Q 0.34 tolerated(0.08) probably_damaging(0.976) TCGA-T2-A6X2-01 15 56736662 56736662 C G MNS1 Missense_Mutation p.K222N 0.33 deleterious(0.01) probably_damaging(1) TCGA-T2-A6X2-01 15 64967313 64967313 G C ZNF609 Missense_Mutation p.E754Q 0.23 deleterious(0) probably_damaging(0.988) TCGA-T2-A6X2-01 15 72543224 72543224 C T PARP6 Silent p.R460R 0.32 TCGA-T2-A6X2-01 15 78461380 78461380 C G IDH3A 3'UTR 0.33 TCGA-T2-A6X2-01 15 93595604 93595604 C T RGMA Silent p.R96R 0.30 TCGA-T2-A6X2-01 16 14340849 14340849 G C MKL2 Missense_Mutation p.E578Q 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-T2-A6X2-01 16 2048160 2048160 G C ZNF598 3'UTR 0.17 TCGA-T2-A6X2-01 16 30094768 30094768 G C PPP4C Missense_Mutation p.Q119H 0.26 deleterious(0) possibly_damaging(0.607) TCGA-T2-A6X2-01 16 30976735 30976735 G A SETD1A Missense_Mutation p.E558K 0.28 benign(0.089) TCGA-T2-A6X2-01 16 3828790 3828790 G T CREBBP Missense_Mutation p.P618T 0.31 probably_damaging(1) TCGA-T2-A6X2-01 16 4466608 4466608 C G CORO7 5'UTR 0.46 TCGA-T2-A6X2-01 16 48249115 48249115 G A ABCC11 Silent p.I364I 0.26 TCGA-T2-A6X2-01 16 5121861 5121861 C T ALG1 Missense_Mutation p.S4L 0.42 tolerated_low_confidence(0.37) benign(0.184) TCGA-T2-A6X2-01 16 57075484 57075484 C A NLRC5 Silent p.L1009L 0.32 TCGA-T2-A6X2-01 16 57290714 57290714 C G PLLP 3'UTR 0.40 TCGA-T2-A6X2-01 16 58621779 58621779 G C CNOT1 Missense_Mutation p.Q72E 0.43 deleterious(0.01) possibly_damaging(0.577) TCGA-T2-A6X2-01 16 70599151 70599151 G C SF3B3 Missense_Mutation p.E883Q 0.26 tolerated(0.14) possibly_damaging(0.616) TCGA-T2-A6X2-01 16 77465343 77465343 G T ADAMTS18 Nonsense_Mutation p.S115* 0.36 TCGA-T2-A6X2-01 16 81094975 81094975 G C C16orf46 Missense_Mutation p.L327V 0.28 tolerated(0.06) probably_damaging(0.992) TCGA-T2-A6X2-01 16 84806171 84806171 C G USP10 Missense_Mutation p.L675V 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-T2-A6X2-01 16 8889890 8889890 G C TMEM186 Missense_Mutation p.F187L 0.29 tolerated(0.9) possibly_damaging(0.47) TCGA-T2-A6X2-01 16 89350644 89350644 G C ANKRD11 Nonsense_Mutation p.S769* 0.23 TCGA-T2-A6X2-01 16 89579436 89579436 G A SPG7 Missense_Mutation p.E123K 0.30 tolerated(0.33) benign(0.097) TCGA-T2-A6X2-01 16 90162063 90162063 C T TUBB8P7 RNA 0.33 TCGA-T2-A6X2-01 17 26722953 26722953 G C SARM1 Missense_Mutation p.K617N 0.27 tolerated(0.22) possibly_damaging(0.869) TCGA-T2-A6X2-01 17 27614198 27614208 GATTTCCCTTT - NUFIP2 Frame_Shift_Del p.K269Sfs*11 0.18 TCGA-T2-A6X2-01 17 27959456 27959456 G A SSH2 Missense_Mutation p.S892L 0.30 tolerated_low_confidence(0.2) benign(0.211) TCGA-T2-A6X2-01 17 3775883 3775883 C T CAMKK1 Silent p.R401R 0.35 TCGA-T2-A6X2-01 17 38451700 38451700 T C CDC6 Silent p.D392D 0.32 TCGA-T2-A6X2-01 17 38546327 38546327 G C TOP2A Missense_Mutation p.Q1453E 0.38 tolerated_low_confidence(0.43) benign(0.001) TCGA-T2-A6X2-01 17 40263444 40263444 C G DHX58 Silent p.L80L 0.18 TCGA-T2-A6X2-01 17 40704915 40704915 C T HSD17B1 5'UTR 0.39 TCGA-T2-A6X2-01 17 40761330 40761330 C A FAM134C Nonsense_Mutation p.E5* 0.26 TCGA-T2-A6X2-01 17 49157043 49157043 G C SPAG9 Missense_Mutation p.S109C 0.24 deleterious(0.01) possibly_damaging(0.8) TCGA-T2-A6X2-01 17 5235282 5235282 C T RABEP1 Nonsense_Mutation p.Q68* 0.33 TCGA-T2-A6X2-01 17 55184348 55184348 C G AKAP1 Nonsense_Mutation p.S508* 0.25 TCGA-T2-A6X2-01 17 6553733 6553733 G C MED31 Missense_Mutation p.R17G 0.28 deleterious(0) probably_damaging(0.975) TCGA-T2-A6X2-01 17 65988155 65988155 G C C17orf58 Silent p.L56L 0.19 TCGA-T2-A6X2-01 17 6663752 6663752 G C XAF1 Missense_Mutation p.E85Q 0.27 tolerated(0.23) benign(0.088) TCGA-T2-A6X2-01 17 66878814 66878814 C G ABCA8 Missense_Mutation p.E1212Q 0.27 tolerated(0.14) benign(0.128) TCGA-T2-A6X2-01 17 72588978 72588978 C T C17orf77 3'UTR 0.37 TCGA-T2-A6X2-01 17 72832685 72832685 G A TMEM104 Silent p.Q450Q 0.25 TCGA-T2-A6X2-01 17 73498434 73498434 C T CASKIN2 Silent p.L907L 0.44 TCGA-T2-A6X2-01 17 73568131 73568131 G C LLGL2 Missense_Mutation p.E816Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-T2-A6X2-01 17 7359130 7359130 C G CHRNB1 Missense_Mutation p.S412C 0.30 tolerated(0.18) benign(0.033) TCGA-T2-A6X2-01 17 74729704 74729704 C T METTL23 Missense_Mutation p.S170F 0.32 deleterious(0.03) possibly_damaging(0.606) TCGA-T2-A6X2-01 17 76203105 76203105 C T AFMID 3'UTR 0.28 TCGA-T2-A6X2-01 17 76440870 76440870 C G DNAH17 Missense_Mutation p.E3768Q 0.16 benign(0.025) TCGA-T2-A6X2-01 17 76567788 76567788 C T DNAH17 Missense_Mutation p.D206N 0.29 benign(0.023) TCGA-T2-A6X2-01 17 79084738 79084738 C A BAIAP2 Intron 0.40 TCGA-T2-A6X2-01 17 7951701 7951701 C G ALOX15B Intron 0.27 TCGA-T2-A6X2-01 17 79872537 79872537 C T SIRT7 Silent p.L174L 0.24 TCGA-T2-A6X2-01 18 21121106 21121106 C T NPC1 Missense_Mutation p.E814K 0.38 tolerated(0.12) benign(0.013) TCGA-T2-A6X2-01 18 24497258 24497258 G C CHST9 Silent p.L99L 0.27 TCGA-T2-A6X2-01 18 2539047 2539047 G C METTL4 Silent p.L457L 0.38 TCGA-T2-A6X2-01 18 29116334 29116334 C G DSG2 Missense_Mutation p.F531L 0.37 deleterious(0) probably_damaging(0.997) TCGA-T2-A6X2-01 18 3086125 3086125 G C MYOM1 Missense_Mutation p.H1388D 0.18 tolerated(0.25) benign(0.191) TCGA-T2-A6X2-01 18 45566424 45566424 A G ZBTB7C Missense_Mutation p.L352P 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-T2-A6X2-01 18 73000281 73000281 C T TSHZ1 Silent p.N928N 0.42 TCGA-T2-A6X2-01 19 12577597 12577597 G C ZNF709 Missense_Mutation p.S24C 0.28 deleterious(0.03) possibly_damaging(0.526) TCGA-T2-A6X2-01 19 15569357 15569357 C T RASAL3 Missense_Mutation p.E258K 0.47 deleterious(0) probably_damaging(0.985) TCGA-T2-A6X2-01 19 18054452 18054452 C G CCDC124 Silent p.L200L 0.25 TCGA-T2-A6X2-01 19 20135093 20135093 C T ZNF682 Silent p.V32V 0.31 TCGA-T2-A6X2-01 19 21607043 21607043 C T ZNF493 Nonsense_Mutation p.R528* 0.29 TCGA-T2-A6X2-01 19 35422771 35422771 G A ZNF30 Missense_Mutation p.G12R 0.35 tolerated(0.17) possibly_damaging(0.671) TCGA-T2-A6X2-01 19 37310127 37310127 T A ZNF790 Missense_Mutation p.K373N 0.36 deleterious(0) probably_damaging(1) TCGA-T2-A6X2-01 19 38134169 38134169 G A ZFP30 Silent p.L78L 0.28 TCGA-T2-A6X2-01 19 41086389 41086389 C G SHKBP1 Nonsense_Mutation p.S187* 0.28 TCGA-T2-A6X2-01 19 42397372 42397372 G C ARHGEF1 Missense_Mutation p.K229N 0.30 deleterious(0) probably_damaging(0.929) TCGA-T2-A6X2-01 19 42754669 42754669 G C ERF Nonsense_Mutation p.S24* 0.20 TCGA-T2-A6X2-01 19 44030763 44030763 C G ETHE1 Missense_Mutation p.E44Q 0.26 tolerated(0.47) benign(0.197) TCGA-T2-A6X2-01 19 45860569 45860569 T C ERCC2 Missense_Mutation p.T480A 0.30 deleterious(0.05) benign(0.005) TCGA-T2-A6X2-01 19 46457193 46457193 G A NOVA2 Missense_Mutation p.R81W 0.28 deleterious(0) unknown(0) TCGA-T2-A6X2-01 19 47986450 47986450 G C KPTN Silent p.L139L 0.27 TCGA-T2-A6X2-01 19 49173889 49173889 C T NTN5 Missense_Mutation p.E119K 0.20 tolerated(0.09) benign(0.011) TCGA-T2-A6X2-01 19 49362295 49362295 G A PLEKHA4 Missense_Mutation p.P265L 0.25 tolerated(0.73) benign(0.002) TCGA-T2-A6X2-01 19 53303413 53303413 C T ZNF28 Missense_Mutation p.R562H 0.22 tolerated(0.76) benign(0.332) TCGA-T2-A6X2-01 19 55663241 55663241 C G TNNI3 Silent p.L198L 0.31 TCGA-T2-A6X2-01 19 5668276 5668276 G A SAFB Missense_Mutation p.D910N 0.39 tolerated_low_confidence(0.21) unknown(0) TCGA-T2-A6X2-01 19 58017977 58017977 G C ZNF773 Missense_Mutation p.E172Q 0.18 tolerated(0.56) benign(0.022) TCGA-T2-A6X2-01 19 7928439 7928439 G A EVI5L Missense_Mutation p.A757T 0.23 tolerated_low_confidence(0.58) benign(0.116) TCGA-T2-A6X2-01 19 8389878 8389879 TG - KANK3 Frame_Shift_Del p.Q680Efs*7 0.24 TCGA-T2-A6X2-01 19 9006375 9006375 G C MUC16 Missense_Mutation p.L13215V 0.15 possibly_damaging(0.903) TCGA-T2-A6X2-01 19 9076986 9076986 G A MUC16 Missense_Mutation p.S3487F 0.33 unknown(0) TCGA-T2-A6X2-01 1 11126794 11126794 T C EXOSC10 Missense_Mutation p.Y880C 0.33 deleterious_low_confidence(0) benign(0.325) TCGA-T2-A6X2-01 1 114967317 114967317 G C TRIM33 Missense_Mutation p.Q586E 0.26 tolerated(0.37) benign(0.067) TCGA-T2-A6X2-01 1 117078587 117078587 C A CD58 Missense_Mutation p.G210C 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-T2-A6X2-01 1 11855277 11855277 C T MTHFR Silent p.V303V 0.25 TCGA-T2-A6X2-01 1 1275804 1275804 G A DVL1 Missense_Mutation p.R229W 0.32 deleterious(0.03) possibly_damaging(0.68) TCGA-T2-A6X2-01 1 1421169 1421169 G A ATAD3B Missense_Mutation p.R305Q 0.30 tolerated(0.18) benign(0.016) TCGA-T2-A6X2-01 1 145103932 145103932 C G SEC22B RNA 0.07 TCGA-T2-A6X2-01 1 150485800 150485800 G A ECM1 Missense_Mutation p.E521K 0.25 tolerated(0.08) benign(0.034) TCGA-T2-A6X2-01 1 151134465 151134465 C G LYSMD1 Missense_Mutation p.D98H 0.27 deleterious(0.01) possibly_damaging(0.815) TCGA-T2-A6X2-01 1 152384626 152384626 G A CRNN Silent p.L28L 0.31 TCGA-T2-A6X2-01 1 153955285 153955285 C T RAB13 Splice_Site p.X109_splice 0.27 TCGA-T2-A6X2-01 1 156555792 156555792 C T TTC24 Missense_Mutation p.A541V 0.30 tolerated_low_confidence(1) benign(0) TCGA-T2-A6X2-01 1 161183707 161183707 C T NDUFS2 Silent p.I450I 0.25 TCGA-T2-A6X2-01 1 16264419 16264419 C T SPEN Missense_Mutation p.S3541F 0.35 probably_damaging(0.936) TCGA-T2-A6X2-01 1 16268624 16268624 G T ZBTB17 Missense_Mutation p.A751E 0.25 deleterious(0.02) benign(0.093) TCGA-T2-A6X2-01 1 16464404 16464404 G C EPHA2 Nonsense_Mutation p.S419* 0.23 TCGA-T2-A6X2-01 1 168262431 168262431 G A TBX19 Missense_Mutation p.R173H 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-T2-A6X2-01 1 1687999 1687999 T A NADK Missense_Mutation p.I293F 0.30 tolerated(0.18) benign(0.262) TCGA-T2-A6X2-01 1 171765985 171765985 G A METTL13 3'UTR 0.27 TCGA-T2-A6X2-01 1 17603149 17603149 C G PADI3 Silent p.P481P 0.28 TCGA-T2-A6X2-01 1 179983534 179983534 C T CEP350 Missense_Mutation p.S649F 0.45 possibly_damaging(0.498) TCGA-T2-A6X2-01 1 180904549 180904549 C A KIAA1614 Missense_Mutation p.P502T 0.29 tolerated(0.42) benign(0.047) TCGA-T2-A6X2-01 1 201757655 201757655 G A NAV1 Missense_Mutation p.E1019K 0.28 deleterious(0) benign(0.176) TCGA-T2-A6X2-01 1 205275416 205275416 G C NUAK2 Missense_Mutation p.S197C 0.26 deleterious(0.01) probably_damaging(1) TCGA-T2-A6X2-01 1 22156483 22156483 C T HSPG2 Intron 0.38 TCGA-T2-A6X2-01 1 226034852 226034852 C T TMEM63A Silent p.Q771Q 0.34 TCGA-T2-A6X2-01 1 228465551 228465551 G C OBSCN Missense_Mutation p.R2713P 0.37 probably_damaging(0.991) TCGA-T2-A6X2-01 1 231374502 231374502 G A C1orf131 Intron 0.38 TCGA-T2-A6X2-01 1 233398807 233398807 C G PCNXL2 Missense_Mutation p.D86H 0.29 deleterious(0) probably_damaging(0.999) TCGA-T2-A6X2-01 1 241797269 241797269 G A CHML Silent p.I600I 0.34 TCGA-T2-A6X2-01 1 245530273 245530273 G T KIF26B Missense_Mutation p.M201I 0.21 deleterious(0.03) unknown(0) TCGA-T2-A6X2-01 1 248402323 248402323 C T OR2M4 Silent p.V31V 0.30 TCGA-T2-A6X2-01 1 248813492 248813492 C T OR2T27 Missense_Mutation p.E232K 0.24 tolerated(0.07) probably_damaging(0.936) TCGA-T2-A6X2-01 1 24995838 24995838 C T SRRM1 Missense_Mutation p.S655L 0.41 unknown(0) TCGA-T2-A6X2-01 1 27700854 27700854 A C FCN3 Silent p.G60G 0.33 TCGA-T2-A6X2-01 1 29602185 29602185 G A PTPRU Missense_Mutation p.R457Q 0.37 tolerated(0.16) benign(0.158) TCGA-T2-A6X2-01 1 35259836 35259836 G A GJA4 Missense_Mutation p.E8K 0.23 deleterious(0.04) benign(0.422) TCGA-T2-A6X2-01 1 38047889 38047889 G C GNL2 Missense_Mutation p.H282D 0.31 deleterious(0) probably_damaging(0.98) TCGA-T2-A6X2-01 1 38079858 38079858 G A RSPO1 Missense_Mutation p.P145L 0.43 tolerated(0.3) benign(0.032) TCGA-T2-A6X2-01 1 38186220 38186220 C T EPHA10 Missense_Mutation p.E739K 0.38 deleterious(0.01) possibly_damaging(0.813) TCGA-T2-A6X2-01 1 55253400 55253400 C G TTC22 Missense_Mutation p.E241D 0.27 tolerated(0.43) benign(0.001) TCGA-T2-A6X2-01 1 55518431 55518431 C G PCSK9 Missense_Mutation p.Q256E 0.19 deleterious(0) possibly_damaging(0.7) TCGA-T2-A6X2-01 1 65691754 65691754 G A AK4 Missense_Mutation p.G189E 0.44 deleterious(0) probably_damaging(1) TCGA-T2-A6X2-01 1 68903925 68903925 C G RPE65 Missense_Mutation p.R358T 0.29 tolerated(0.23) benign(0.007) TCGA-T2-A6X2-01 1 8074116 8074116 G A ERRFI1 Silent p.F181F 0.26 TCGA-T2-A6X2-01 20 10603802 10603802 G A SLX4IP Silent p.L334L 0.36 TCGA-T2-A6X2-01 20 1424538 1424538 G A NSFL1C Silent p.L325L 0.16 TCGA-T2-A6X2-01 20 23066032 23066032 G A CD93 Silent p.F266F 0.33 TCGA-T2-A6X2-01 20 2375932 2375932 C A TGM6 Missense_Mutation p.Q92K 0.35 tolerated(0.27) benign(0.039) TCGA-T2-A6X2-01 20 24524081 24524081 C T SYNDIG1 Silent p.I116I 0.21 TCGA-T2-A6X2-01 20 25436402 25436402 C T NINL Silent p.L1288L 0.29 TCGA-T2-A6X2-01 20 2593870 2593870 C T TMC2 Silent p.L592L 0.28 TCGA-T2-A6X2-01 20 33342641 33342641 G A NCOA6 Missense_Mutation p.S520L 0.34 possibly_damaging(0.625) TCGA-T2-A6X2-01 20 3657786 3657786 G C ADAM33 Missense_Mutation p.S61W 0.17 deleterious(0.05) benign(0.014) TCGA-T2-A6X2-01 20 61513015 61513015 C G DIDO1 Missense_Mutation p.E1431D 0.34 probably_damaging(0.996) TCGA-T2-A6X2-01 20 8769168 8769168 G C PLCB1 Missense_Mutation p.E1062Q 0.34 deleterious(0.02) probably_damaging(0.944) TCGA-T2-A6X2-01 21 11029691 11029691 C G BAGE2 RNA 0.04 TCGA-T2-A6X2-01 21 27136926 27136926 C T GABPA Silent p.L322L 0.27 TCGA-T2-A6X2-01 21 28216919 28216919 C T ADAMTS1 Missense_Mutation p.D119N 0.18 tolerated(0.12) benign(0.04) TCGA-T2-A6X2-01 21 30927505 30927505 T C GRIK1 Silent p.K825K 0.24 TCGA-T2-A6X2-01 21 38520908 38520908 G A TTC3 Silent p.K693K 0.27 TCGA-T2-A6X2-01 21 40883722 40883722 C A SH3BGR 3'UTR 0.25 TCGA-T2-A6X2-01 21 45194163 45194163 G C CSTB Missense_Mutation p.L73V 0.28 deleterious(0) probably_damaging(0.957) TCGA-T2-A6X2-01 21 45553591 45553591 G A C21orf33 Silent p.V4V 0.25 TCGA-T2-A6X2-01 21 45553636 45553636 G A C21orf33 Silent p.T19T 0.19 TCGA-T2-A6X2-01 21 46888526 46888526 C T COL18A1 Silent p.V339V 0.32 TCGA-T2-A6X2-01 21 47769698 47769698 C G PCNT Missense_Mutation p.F436L 0.28 benign(0) TCGA-T2-A6X2-01 22 29745300 29745300 C T AP1B1 Missense_Mutation p.M448I 0.31 tolerated(0.07) benign(0.135) TCGA-T2-A6X2-01 22 31487662 31487662 A C SMTN Missense_Mutation p.E487D 0.29 deleterious(0) possibly_damaging(0.886) TCGA-T2-A6X2-01 22 32545761 32545761 C G C22orf42 Missense_Mutation p.E221Q 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-T2-A6X2-01 22 32889106 32889106 G A FBXO7 Missense_Mutation p.D328N 0.27 tolerated(0.1) probably_damaging(0.922) TCGA-T2-A6X2-01 22 36007002 36007002 G A MB Missense_Mutation p.H83Y 0.42 deleterious(0) probably_damaging(0.914) TCGA-T2-A6X2-01 22 36681376 36681376 C T MYH9 Splice_Site p.X1759_splice 0.35 TCGA-T2-A6X2-01 22 50502550 50502550 G A MLC1 Silent p.I324I 0.31 TCGA-T2-A6X2-01 2 10559926 10559926 G T HPCAL1 Missense_Mutation p.D15Y 0.27 deleterious(0) probably_damaging(0.987) TCGA-T2-A6X2-01 2 108487533 108487533 G T RGPD4 Missense_Mutation p.D1025Y 0.26 deleterious(0) possibly_damaging(0.887) TCGA-T2-A6X2-01 2 112865405 112865405 C A TMEM87B Nonsense_Mutation p.S522* 0.32 TCGA-T2-A6X2-01 2 116485415 116485415 C G DPP10 Missense_Mutation p.I204M 0.38 deleterious(0) probably_damaging(0.969) TCGA-T2-A6X2-01 2 11706755 11706755 G A GREB1 Missense_Mutation p.D143N 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-T2-A6X2-01 2 136566641 136566641 C T LCT Silent p.R1092R 0.36 TCGA-T2-A6X2-01 2 141135780 141135780 C G LRP1B Missense_Mutation p.G3536A 0.25 probably_damaging(0.939) TCGA-T2-A6X2-01 2 168106801 168106801 G C XIRP2 Missense_Mutation p.E2967Q 0.32 probably_damaging(0.946) TCGA-T2-A6X2-01 2 170028582 170028582 G A LRP2 Missense_Mutation p.R3736C 0.64 probably_damaging(1) TCGA-T2-A6X2-01 2 174096945 174096945 G C MLTK Missense_Mutation p.R353T 0.25 tolerated(0.57) benign(0.004) TCGA-T2-A6X2-01 2 179417290 179417290 C T TTN Missense_Mutation p.D30113N 0.31 TCGA-T2-A6X2-01 2 179428253 179428253 C T TTN Missense_Mutation p.E27536K 0.36 TCGA-T2-A6X2-01 2 191301273 191301273 G A MFSD6 Missense_Mutation p.S173N 0.31 tolerated(0.14) benign(0.052) TCGA-T2-A6X2-01 2 201758022 201758022 G A NIF3L1 Missense_Mutation p.E164K 0.32 tolerated(0.26) benign(0.297) TCGA-T2-A6X2-01 2 201814348 201814348 G C ORC2 Missense_Mutation p.S86C 0.15 tolerated(0.09) benign(0.013) TCGA-T2-A6X2-01 2 202122910 202122910 C T CASP8 5'UTR 0.26 TCGA-T2-A6X2-01 2 202141586 202141586 C T CASP8 Missense_Mutation p.R292W 0.58 deleterious(0) probably_damaging(1) TCGA-T2-A6X2-01 2 203807580 203807580 C T CARF Missense_Mutation p.P66S 0.47 tolerated_low_confidence(0.36) benign(0.006) TCGA-T2-A6X2-01 2 206590642 206590642 C T NRP2 Nonsense_Mutation p.Q276* 0.31 TCGA-T2-A6X2-01 2 220347553 220347553 C T SPEG Silent p.F1871F 0.39 TCGA-T2-A6X2-01 2 231314967 231314967 G C SP100 Missense_Mutation p.E273Q 0.28 tolerated(0.06) possibly_damaging(0.607) TCGA-T2-A6X2-01 2 233198570 233198570 G C DIS3L2 Silent p.S677S 0.21 TCGA-T2-A6X2-01 2 26414103 26414103 G A HADHA 3'UTR 0.31 TCGA-T2-A6X2-01 2 27522228 27522228 G A TRIM54 Missense_Mutation p.G153S 0.29 deleterious(0) possibly_damaging(0.898) TCGA-T2-A6X2-01 2 32738125 32738127 CTT - BIRC6 In_Frame_Del p.S3492del 0.37 TCGA-T2-A6X2-01 2 55561412 55561412 C G CCDC88A Missense_Mutation p.D849H 0.05 deleterious(0) probably_damaging(1) TCGA-T2-A6X2-01 2 61310292 61310292 G A KIAA1841 Missense_Mutation p.E245K 0.27 tolerated(0.12) benign(0.045) TCGA-T2-A6X2-01 2 63175858 63175858 G T EHBP1 Missense_Mutation p.G661V 0.21 tolerated_low_confidence(0.08) benign(0.002) TCGA-T2-A6X2-01 2 69043430 69043430 G C ARHGAP25 Missense_Mutation p.E273Q 0.31 deleterious(0.01) possibly_damaging(0.837) TCGA-T2-A6X2-01 2 73339681 73339681 G C RAB11FIP5 Missense_Mutation p.F75L 0.30 deleterious(0) probably_damaging(0.994) TCGA-T2-A6X2-01 2 74392365 74392365 G T MOB1A Missense_Mutation p.T130N 0.17 tolerated(0.27) benign(0.003) TCGA-T2-A6X2-01 2 74761274 74761274 G T LOXL3 Missense_Mutation p.Q677K 0.35 deleterious(0) probably_damaging(0.998) TCGA-T2-A6X2-01 2 88082711 88082711 C T RGPD2 Missense_Mutation p.D1278N 0.38 deleterious(0.02) possibly_damaging(0.728) TCGA-T2-A6X2-01 3 115805314 115805314 G C LSAMP Missense_Mutation p.P82R 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-T2-A6X2-01 3 121208473 121208473 G C POLQ Missense_Mutation p.S1102C 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.717) TCGA-T2-A6X2-01 3 122168493 122168493 G C KPNA1 Nonsense_Mutation p.S282* 0.29 TCGA-T2-A6X2-01 3 123427692 123427692 C G MYLK Missense_Mutation p.E665Q 0.21 tolerated(0.1) benign(0.048) TCGA-T2-A6X2-01 3 133368726 133368726 C G TOPBP1 Missense_Mutation p.G384A 0.37 tolerated(0.21) possibly_damaging(0.65) TCGA-T2-A6X2-01 3 133478161 133478161 C T TF Silent p.I397I 0.28 TCGA-T2-A6X2-01 3 150916981 150916981 G T GPR171 Missense_Mutation p.L65M 0.24 deleterious(0.01) possibly_damaging(0.577) TCGA-T2-A6X2-01 3 15637922 15637922 C T HACL1 Missense_Mutation p.A66T 0.06 deleterious(0.01) probably_damaging(0.978) TCGA-T2-A6X2-01 3 160073896 160073896 G A IFT80 Missense_Mutation p.H228Y 0.31 tolerated(0.39) probably_damaging(0.966) TCGA-T2-A6X2-01 3 179519703 179519703 G C PEX5L Silent p.L598L 0.23 TCGA-T2-A6X2-01 3 183679419 183679419 C T ABCC5 Silent p.V753V 0.29 TCGA-T2-A6X2-01 3 187447584 187447584 G A BCL6 Silent p.V203V 0.27 TCGA-T2-A6X2-01 3 196311148 196311148 G A FBXO45 Missense_Mutation p.E274K 0.25 deleterious(0.02) probably_damaging(1) TCGA-T2-A6X2-01 3 25639816 25639816 A G TOP2B Silent p.D1616D 0.55 TCGA-T2-A6X2-01 3 30732942 30732942 G A TGFBR2 Missense_Mutation p.E544K 0.56 deleterious(0) probably_damaging(0.992) TCGA-T2-A6X2-01 3 36873736 36873736 G A TRANK1 Silent p.I2402I 0.54 TCGA-T2-A6X2-01 3 37292899 37292899 C G GOLGA4 Missense_Mutation p.S29C 0.58 unknown(0) TCGA-T2-A6X2-01 3 44974659 44974659 G A ZDHHC3 Silent p.L187L 0.49 TCGA-T2-A6X2-01 3 48612946 48612946 G A COL7A1 Silent p.R2002R 0.63 TCGA-T2-A6X2-01 3 51430187 51430187 G A RBM15B Missense_Mutation p.D453N 0.25 deleterious(0.03) benign(0.303) TCGA-T2-A6X2-01 3 52394003 52394003 C T DNAH1 Silent p.I1493I 0.29 TCGA-T2-A6X2-01 3 52514222 52514222 C T NISCH Missense_Mutation p.S480L 0.22 deleterious(0.01) benign(0.003) TCGA-T2-A6X2-01 3 52734486 52734486 C A GLT8D1 5'UTR 0.22 TCGA-T2-A6X2-01 3 62358352 62358352 G A FEZF2 Silent p.L64L 0.32 TCGA-T2-A6X2-01 3 97467507 97467507 C A EPHA6 Missense_Mutation p.H1119N 0.23 deleterious(0) benign(0.03) TCGA-T2-A6X2-01 4 104027286 104027286 T A CENPE 3'UTR 0.31 TCGA-T2-A6X2-01 4 10445505 10445505 C T ZNF518B Silent p.V816V 0.36 TCGA-T2-A6X2-01 4 114251401 114251401 G A ANK2 Splice_Site p.X967_splice 0.41 TCGA-T2-A6X2-01 4 122760789 122760789 G C BBS7 Silent p.L456L 0.26 TCGA-T2-A6X2-01 4 123192658 123192658 G T KIAA1109 Missense_Mutation p.R2660I 0.27 possibly_damaging(0.893) TCGA-T2-A6X2-01 4 155507127 155507127 G A FGA Missense_Mutation p.S485F 0.30 deleterious(0) probably_damaging(0.999) TCGA-T2-A6X2-01 4 159051943 159051943 G C FAM198B Missense_Mutation p.I457M 0.30 deleterious(0) probably_damaging(0.965) TCGA-T2-A6X2-01 4 166234437 166234437 C G KLHL2 Missense_Mutation p.L467V 0.28 deleterious(0.01) possibly_damaging(0.886) TCGA-T2-A6X2-01 4 17609223 17609223 C G LAP3 3'UTR 0.33 TCGA-T2-A6X2-01 4 185350199 185350199 C T IRF2 Missense_Mutation p.R7H 0.32 deleterious(0) probably_damaging(0.999) TCGA-T2-A6X2-01 4 187509932 187509932 G A FAT1 Silent p.F4527F 0.32 TCGA-T2-A6X2-01 4 188924281 188924281 C G ZFP42 Missense_Mutation p.S107C 0.29 deleterious(0) possibly_damaging(0.819) TCGA-T2-A6X2-01 4 25760611 25760611 G C SEL1L3 Nonsense_Mutation p.S1012* 0.34 TCGA-T2-A6X2-01 4 55575701 55575701 G C KIT Silent p.V409V 0.27 TCGA-T2-A6X2-01 4 83827742 83827742 C T THAP9 Missense_Mutation p.S181F 0.30 deleterious(0.01) benign(0.316) TCGA-T2-A6X2-01 4 96199475 96199475 C G UNC5C Missense_Mutation p.E177Q 0.28 deleterious(0.01) benign(0.378) TCGA-T2-A6X2-01 4 99338644 99338644 G A RAP1GDS1 Missense_Mutation p.R346K 0.21 tolerated(0.11) probably_damaging(0.998) TCGA-T2-A6X2-01 5 102895751 102895751 C G NUDT12 Missense_Mutation p.E67Q 0.28 tolerated(0.14) benign(0.101) TCGA-T2-A6X2-01 5 10400928 10400928 C T MARCH6 Missense_Mutation p.L316F 0.25 deleterious(0.01) benign(0.128) TCGA-T2-A6X2-01 5 127854968 127854968 C G FBN2 Missense_Mutation p.R209T 0.26 tolerated(0.1) benign(0.005) TCGA-T2-A6X2-01 5 133644119 133644119 G A CDKL3 Silent p.V358V 0.26 TCGA-T2-A6X2-01 5 138362571 138362571 C T SIL1 Silent p.L188L 0.28 TCGA-T2-A6X2-01 5 140531996 140531996 G T PCDHB6 Missense_Mutation p.V720L 0.25 tolerated(1) benign(0.001) TCGA-T2-A6X2-01 5 140811313 140811313 G A PCDHGA12 Silent p.A329A 0.24 TCGA-T2-A6X2-01 5 149769552 149769552 C T TCOF1 Missense_Mutation p.S1050L 0.30 deleterious(0.03) benign(0.04) TCGA-T2-A6X2-01 5 151183714 151183714 A G G3BP1 3'UTR 0.52 TCGA-T2-A6X2-01 5 153857334 153857334 C A HAND1 Missense_Mutation p.G79W 0.17 deleterious(0.01) possibly_damaging(0.632) TCGA-T2-A6X2-01 5 159842151 159842151 C T SLU7 Missense_Mutation p.E51K 0.25 tolerated(0.1) possibly_damaging(0.661) TCGA-T2-A6X2-01 5 170883824 170883824 G A FGF18 3'UTR 0.38 TCGA-T2-A6X2-01 5 171523431 171523431 G A STK10 Missense_Mutation p.S335F 0.24 deleterious(0.01) benign(0.192) TCGA-T2-A6X2-01 5 176882799 176882799 G A PRR7 Missense_Mutation p.E168K 0.30 deleterious(0) probably_damaging(0.959) TCGA-T2-A6X2-01 5 180017650 180017650 C T SCGB3A1 Missense_Mutation p.E81K 0.50 deleterious(0) possibly_damaging(0.486) TCGA-T2-A6X2-01 5 181768 181768 C T PLEKHG4B Silent p.P1158P 0.33 TCGA-T2-A6X2-01 5 33637805 33637805 G A ADAMTS12 Missense_Mutation p.R589C 0.25 deleterious(0) probably_damaging(0.999) TCGA-T2-A6X2-01 5 35909972 35909972 C G CAPSL Missense_Mutation p.G174A 0.30 deleterious(0) probably_damaging(0.99) TCGA-T2-A6X2-01 5 35910521 35910521 C G CAPSL Missense_Mutation p.D88H 0.28 deleterious(0) probably_damaging(1) TCGA-T2-A6X2-01 5 35910596 35910596 C T CAPSL Missense_Mutation p.E63K 0.27 deleterious(0.02) possibly_damaging(0.877) TCGA-T2-A6X2-01 5 52360866 52360866 C T ITGA2 Missense_Mutation p.S576L 0.33 deleterious(0) possibly_damaging(0.713) TCGA-T2-A6X2-01 5 61745762 61745762 C T IPO11 Missense_Mutation p.S123L 0.24 deleterious(0.02) benign(0.028) TCGA-T2-A6X2-01 5 70855889 70855889 G A BDP1 Missense_Mutation p.E2441K 0.31 deleterious(0.04) benign(0.072) TCGA-T2-A6X2-01 5 72743651 72743651 G A FOXD1 Silent p.L179L 0.35 TCGA-T2-A6X2-01 5 75886384 75886384 G C IQGAP2 Missense_Mutation p.K264N 0.24 tolerated(0.38) benign(0.131) TCGA-T2-A6X2-01 5 78379463 78379463 G C BHMT2 Missense_Mutation p.R265T 0.27 tolerated(0.07) probably_damaging(0.958) TCGA-T2-A6X2-01 6 100006286 100006286 C G CCNC Intron 0.28 TCGA-T2-A6X2-01 6 10402728 10402728 C G TFAP2A Missense_Mutation p.E294Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-T2-A6X2-01 6 109765305 109765305 C T MICAL1 3'UTR 0.34 TCGA-T2-A6X2-01 6 116558226 116558226 G A NT5DC1 Missense_Mutation p.M300I 0.25 tolerated(0.2) benign(0.004) TCGA-T2-A6X2-01 6 116565108 116565108 C G NT5DC1 Nonsense_Mutation p.S430* 0.33 TCGA-T2-A6X2-01 6 117647566 117647566 G C ROS1 Nonsense_Mutation p.S1793* 0.23 TCGA-T2-A6X2-01 6 118635386 118635386 G A SLC35F1 Missense_Mutation p.E400K 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.612) TCGA-T2-A6X2-01 6 152708344 152708344 C T SYNE1 Missense_Mutation p.E2784K 0.29 possibly_damaging(0.566) TCGA-T2-A6X2-01 6 155469444 155469444 G C TIAM2 Missense_Mutation p.K668N 0.33 deleterious(0) possibly_damaging(0.522) TCGA-T2-A6X2-01 6 170104084 170104084 G A PHF10 3'UTR 0.23 TCGA-T2-A6X2-01 6 26216803 26216803 C G HIST1H2BG Missense_Mutation p.Q23H 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-T2-A6X2-01 6 26373231 26373231 G A BTN3A2 Silent p.Q274Q 0.25 TCGA-T2-A6X2-01 6 26373256 26373256 G C BTN3A2 Missense_Mutation p.E283Q 0.26 tolerated(0.11) possibly_damaging(0.662) TCGA-T2-A6X2-01 6 27782155 27782155 C T HIST1H2AJ Missense_Mutation p.E122K 0.31 tolerated_low_confidence(0.2) benign(0.048) TCGA-T2-A6X2-01 6 30140249 30140249 G C TRIM15 3'UTR 0.15 TCGA-T2-A6X2-01 6 30613683 30613683 C G ATAT1 Missense_Mutation p.P315R 0.60 tolerated(0.17) benign(0.015) TCGA-T2-A6X2-01 6 31238134 31238134 G C HLA-C Missense_Mutation p.Q250E 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-T2-A6X2-01 6 31323241 31323241 G C HLA-B Missense_Mutation p.Q250E 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.793) TCGA-T2-A6X2-01 6 31948488 31948488 C T STK19 Missense_Mutation p.S324L 0.27 deleterious(0.01) possibly_damaging(0.9) TCGA-T2-A6X2-01 6 32815823 32815823 C G TAP1 Missense_Mutation p.G598A 0.30 deleterious(0) probably_damaging(0.949) TCGA-T2-A6X2-01 6 33409032 33409032 G C SYNGAP1 Missense_Mutation p.E666Q 0.30 deleterious(0.05) probably_damaging(0.964) TCGA-T2-A6X2-01 6 33409098 33409098 G C SYNGAP1 Missense_Mutation p.E688Q 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-T2-A6X2-01 6 33660555 33660555 C T ITPR3 Silent p.I2503I 0.33 TCGA-T2-A6X2-01 6 35565124 35565124 G C FKBP5 Missense_Mutation p.T189S 0.60 tolerated(0.84) benign(0.007) TCGA-T2-A6X2-01 6 53159069 53159069 C G ELOVL5 Intron 0.67 TCGA-T2-A6X2-01 6 54805670 54805670 C G FAM83B Nonsense_Mutation p.S634* 0.29 TCGA-T2-A6X2-01 6 55192272 55192272 C G GFRAL 5'UTR 0.41 TCGA-T2-A6X2-01 6 56482994 56482994 G C DST Intron 0.28 TCGA-T2-A6X2-01 6 69943301 69943301 G C BAI3 Missense_Mutation p.R867T 0.27 tolerated(0.14) probably_damaging(0.977) TCGA-T2-A6X2-01 6 71501416 71501416 C T SMAP1 Nonsense_Mutation p.Q147* 0.23 TCGA-T2-A6X2-01 6 7583682 7583682 C T DSP Missense_Mutation p.R2063W 0.26 probably_damaging(0.999) TCGA-T2-A6X2-01 7 100486564 100486564 A G UFSP1 Missense_Mutation p.V110A 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-T2-A6X2-01 7 100780683 100780683 C G SERPINE1 Intron 0.26 TCGA-T2-A6X2-01 7 102985079 102985079 G A DNAJC2 5'UTR 0.05 TCGA-T2-A6X2-01 7 103206813 103206813 C T RELN Missense_Mutation p.M1598I 0.24 deleterious(0.05) benign(0.058) TCGA-T2-A6X2-01 7 105148734 105148734 C A PUS7 Missense_Mutation p.A76S 0.26 tolerated(0.48) benign(0.031) TCGA-T2-A6X2-01 7 105732188 105732188 C T SYPL1 3'UTR 0.21 TCGA-T2-A6X2-01 7 112579651 112579651 C T C7orf60 Missense_Mutation p.R52Q 0.24 tolerated(0.3) benign(0.014) TCGA-T2-A6X2-01 7 127014111 127014111 G A ZNF800 Missense_Mutation p.P427S 0.28 tolerated(0.64) benign(0.004) TCGA-T2-A6X2-01 7 138711580 138711580 C G ZC3HAV1L Splice_Site p.X254_splice 0.35 TCGA-T2-A6X2-01 7 142206614 142206614 C T TRBV10-2 Missense_Mutation p.D81N 0.30 tolerated(0.23) benign(0.093) TCGA-T2-A6X2-01 7 2752119 2752119 C A AMZ1 Silent p.L368L 0.24 TCGA-T2-A6X2-01 7 5925792 5925792 G A OCM 3'UTR 0.10 TCGA-T2-A6X2-01 7 6048638 6048638 C T PMS2 Missense_Mutation p.E5K 0.21 tolerated_low_confidence(0.18) benign(0.159) TCGA-T2-A6X2-01 7 64166960 64166960 G C ZNF107 Missense_Mutation p.R93T 0.30 tolerated(0.18) possibly_damaging(0.565) TCGA-T2-A6X2-01 7 73085501 73085501 C T VPS37D Missense_Mutation p.T184I 0.29 tolerated(0.14) benign(0.004) TCGA-T2-A6X2-01 7 89884785 89884785 G C C7orf63 Missense_Mutation p.E57Q 0.35 deleterious(0.02) benign(0.376) TCGA-T2-A6X2-01 7 91502885 91502885 G A MTERF 3'UTR 0.33 TCGA-T2-A6X2-01 7 92818541 92818541 C T HEPACAM2 3'UTR 0.29 TCGA-T2-A6X2-01 7 97482676 97482676 G C ASNS Missense_Mutation p.L421V 0.27 deleterious(0) probably_damaging(1) TCGA-T2-A6X2-01 8 118541046 118541046 G A MED30 Missense_Mutation p.E112K 0.16 deleterious(0) possibly_damaging(0.604) TCGA-T2-A6X2-01 8 124105863 124105863 C T TBC1D31 Silent p.L184L 0.49 TCGA-T2-A6X2-01 8 134050925 134050925 G A SLA Silent p.F265F 0.17 TCGA-T2-A6X2-01 8 134262697 134262697 G C NDRG1 Missense_Mutation p.I228M 0.15 tolerated(0.15) possibly_damaging(0.707) TCGA-T2-A6X2-01 8 143558507 143558507 A G BAI1 Missense_Mutation p.S364G 0.62 deleterious(0.02) benign(0.418) TCGA-T2-A6X2-01 8 145582012 145582012 C G FBXL6 Silent p.P32P 0.21 TCGA-T2-A6X2-01 8 22035427 22035427 G A BMP1 Missense_Mutation p.D265N 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-T2-A6X2-01 8 24775451 24775451 G A NEFM Missense_Mutation p.E695K 0.30 tolerated(0.26) possibly_damaging(0.637) TCGA-T2-A6X2-01 8 42183613 42183613 G C IKBKB Missense_Mutation p.K704N 0.37 tolerated(0.34) benign(0.043) TCGA-T2-A6X2-01 8 42693377 42693377 G A THAP1 Nonsense_Mutation p.Q124* 0.32 TCGA-T2-A6X2-01 8 53596249 53596249 C G RB1CC1 Missense_Mutation p.E77Q 0.55 deleterious(0.03) probably_damaging(0.993) TCGA-T2-A6X2-01 8 57354478 57354478 C T PENK Missense_Mutation p.E53K 0.52 deleterious(0) possibly_damaging(0.708) TCGA-T2-A6X2-01 8 61736513 61736513 G A CHD7 Missense_Mutation p.E1106K 0.22 probably_damaging(0.996) TCGA-T2-A6X2-01 8 68178422 68178422 G A ARFGEF1 Nonsense_Mutation p.Q648* 0.24 TCGA-T2-A6X2-01 8 68982070 68982070 G T PREX2 Missense_Mutation p.G482C 0.14 deleterious(0) probably_damaging(1) TCGA-T2-A6X2-01 9 103109132 103109132 C T TEX10 Missense_Mutation p.R246K 0.35 tolerated(0.88) benign(0.003) TCGA-T2-A6X2-01 9 116094225 116094225 T C WDR31 Silent p.K26K 0.33 TCGA-T2-A6X2-01 9 127715023 127715023 G C SCAI 3'Flank 0.33 TCGA-T2-A6X2-01 9 131235288 131235288 G A ODF2 Missense_Mutation p.M226I 0.25 tolerated(0.4) benign(0.006) TCGA-T2-A6X2-01 9 131254734 131254734 C G ODF2 Silent p.L522L 0.25 TCGA-T2-A6X2-01 9 134165376 134165376 G A PPAPDC3 5'UTR 0.40 TCGA-T2-A6X2-01 9 135961694 135961694 G A CELP RNA 0.10 TCGA-T2-A6X2-01 9 139401269 139401270 - C NOTCH1 Frame_Shift_Ins p.D1267Gfs*24 0.39 TCGA-T2-A6X2-01 9 21480952 21480952 C G IFNE 3'UTR 0.33 TCGA-T2-A6X2-01 9 32630678 32630678 C G TAF1L Missense_Mutation p.E1634Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-T2-A6X2-01 9 35099981 35099981 C G STOML2 3'UTR 0.31 TCGA-T2-A6X2-01 9 35100058 35100058 C G STOML2 Missense_Mutation p.E349Q 0.29 tolerated(0.13) probably_damaging(0.954) TCGA-T2-A6X2-01 9 37588863 37588863 C T TOMM5 3'UTR 0.21 TCGA-T2-A6X2-01 9 37784017 37784017 G A EXOSC3 Missense_Mutation p.A123V 0.27 tolerated(0.09) benign(0.102) TCGA-T2-A6X2-01 9 79934542 79934542 G A VPS13A Missense_Mutation p.E1790K 0.30 deleterious(0.01) possibly_damaging(0.752) TCGA-T2-A6X2-01 9 84608912 84608912 C T SPATA31D1 Missense_Mutation p.A1176V 0.31 tolerated(1) benign(0.03) TCGA-T2-A6X2-01 9 95077661 95077661 C T NOL8 Missense_Mutation p.E416K 0.29 tolerated(1) benign(0.002) TCGA-T2-A6X2-01 9 97522183 97522183 G A C9orf3 Missense_Mutation p.E40K 0.20 deleterious(0.04) benign(0.097) TCGA-T2-A6X2-01 X 100503251 100503251 C A DRP2 Missense_Mutation p.L476I 0.59 tolerated(0.14) probably_damaging(0.999) TCGA-T2-A6X2-01 X 101970216 101970216 C T GPRASP2 Missense_Mutation p.S140L 0.61 tolerated(0.65) benign(0.004) TCGA-T2-A6X2-01 X 114540824 114540824 G C LUZP4 Missense_Mutation p.E133Q 0.63 deleterious(0.01) benign(0.197) TCGA-T2-A6X2-01 X 12939092 12939092 G A TLR8 Missense_Mutation p.D645N 0.58 deleterious(0.03) probably_damaging(0.969) TCGA-T2-A6X2-01 X 138623273 138623273 G A F9 Missense_Mutation p.G106S 0.57 deleterious(0) probably_damaging(0.976) TCGA-T2-A6X2-01 X 148627224 148627224 C G CXorf40A Silent p.V16V 0.47 TCGA-T2-A6X2-01 X 150844505 150844505 G T PASD1 Missense_Mutation p.D738Y 0.59 deleterious_low_confidence(0.03) benign(0.102) TCGA-T2-A6X2-01 X 16888232 16888232 G C RBBP7 5'Flank 0.39 TCGA-T2-A6X2-01 X 41056744 41056744 G C USP9X Missense_Mutation p.G1454A 0.47 tolerated(0.12) probably_damaging(0.991) TCGA-T2-A6X2-01 X 41469159 41469159 C T CASK Missense_Mutation p.D385N 0.50 tolerated(0.1) benign(0.005) TCGA-T2-A6X2-01 X 44928826 44928826 G A KDM6A Silent p.G642G 0.26 TCGA-T2-A6X2-01 X 47058240 47058240 C T UBA1 Silent p.S13S 0.49 TCGA-T2-A6X2-01 X 51075949 51075949 C G NUDT10 Silent p.R44R 0.54 TCGA-T2-A6X2-01 X 53612084 53612084 T C HUWE1 Missense_Mutation p.Y1630C 0.64 probably_damaging(1) TCGA-T2-A6X2-01 X 54099678 54099678 C A FAM120C Missense_Mutation p.G1027C 0.43 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-T2-A6X2-01 X 67938003 67938003 G A STARD8 Missense_Mutation p.G416E 0.50 tolerated(0.44) benign(0.39) TCGA-T2-A6X2-01 X 70281738 70281738 G C SNX12 Missense_Mutation p.S114C 0.48 deleterious(0.01) possibly_damaging(0.673) TCGA-T3-A92M-01 10 104497569 104497569 C T SFXN2 3'UTR 0.21 TCGA-T3-A92M-01 10 113933538 113933538 G C GPAM Nonsense_Mutation p.S160* 0.12 TCGA-T3-A92M-01 10 124058634 124058634 T G BTBD16 Missense_Mutation p.V259G 0.19 deleterious(0) probably_damaging(1) TCGA-T3-A92M-01 10 134621926 134621926 C G TTC40 Nonstop_Mutation p.*2716Sext*4 0.17 TCGA-T3-A92M-01 10 22015240 22015240 C T MLLT10 Missense_Mutation p.S649L 0.09 tolerated(0.2) benign(0.083) TCGA-T3-A92M-01 10 25464361 25464361 G A GPR158 Missense_Mutation p.M4I 0.12 tolerated_low_confidence(0.17) unknown(0) TCGA-T3-A92M-01 10 3206071 3206074 TGTC - PITRM1 Frame_Shift_Del p.D212Mfs*61 0.19 TCGA-T3-A92M-01 10 70405188 70405188 C T TET1 Missense_Mutation p.S901L 0.12 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 10 75542900 75542900 G C CHCHD1 Missense_Mutation p.L104F 0.32 deleterious(0.03) benign(0.11) TCGA-T3-A92M-01 10 75676154 75676154 C T PLAU Missense_Mutation p.S376L 0.38 deleterious(0) probably_damaging(1) TCGA-T3-A92M-01 10 75757927 75757927 C T VCL 5'UTR 0.14 TCGA-T3-A92M-01 10 92508659 92508659 G C HTR7 Nonsense_Mutation p.S411* 0.11 TCGA-T3-A92M-01 10 93952390 93952390 G A CPEB3 Missense_Mutation p.R337W 0.15 deleterious(0) probably_damaging(0.982) TCGA-T3-A92M-01 10 98287224 98287224 G C TM9SF3 Nonsense_Mutation p.S524* 0.13 TCGA-T3-A92M-01 11 117392001 117392001 C A DSCAML1 Nonsense_Mutation p.E413* 0.27 TCGA-T3-A92M-01 11 118889511 118889511 G T TRAPPC4 Silent p.A2A 0.23 TCGA-T3-A92M-01 11 123886995 123886995 G A OR10G4 Silent p.Q238Q 0.11 TCGA-T3-A92M-01 11 124861477 124861477 C T CCDC15 Nonsense_Mutation p.Q677* 0.30 TCGA-T3-A92M-01 11 1269842 1269842 G A MUC5B Missense_Mutation p.G3911E 0.07 unknown(0) TCGA-T3-A92M-01 11 130332600 130332600 T A ADAMTS15 Missense_Mutation p.D489E 0.08 deleterious(0) probably_damaging(0.99) TCGA-T3-A92M-01 11 132306116 132306116 C T OPCML Silent p.L267L 0.16 TCGA-T3-A92M-01 11 16838397 16838397 C G PLEKHA7 Missense_Mutation p.D606H 0.06 deleterious(0) probably_damaging(0.982) TCGA-T3-A92M-01 11 18045526 18045526 T A TPH1 Missense_Mutation p.Y312F 0.10 tolerated(0.08) possibly_damaging(0.906) TCGA-T3-A92M-01 11 27743048 27743048 C T RP11-587D21.4 Intron 0.18 TCGA-T3-A92M-01 11 40137136 40137136 G C LRRC4C Missense_Mutation p.P236R 0.34 deleterious(0.04) possibly_damaging(0.478) TCGA-T3-A92M-01 11 40137246 40137246 C G LRRC4C Missense_Mutation p.L199F 0.12 deleterious(0) probably_damaging(1) TCGA-T3-A92M-01 11 47261760 47261760 G A ACP2 Silent p.F393F 0.12 TCGA-T3-A92M-01 11 47290154 47290154 G C NR1H3 Silent p.L417L 0.09 TCGA-T3-A92M-01 11 47376900 47376900 C T SPI1 Missense_Mutation p.A232T 0.22 deleterious(0) possibly_damaging(0.902) TCGA-T3-A92M-01 11 47690425 47690425 G C AGBL2 Missense_Mutation p.L728V 0.08 tolerated(0.07) possibly_damaging(0.86) TCGA-T3-A92M-01 11 55904309 55904309 C A OR8J3 Missense_Mutation p.D296Y 0.32 deleterious(0.01) benign(0.078) TCGA-T3-A92M-01 11 5799213 5799213 A T OR52N5 Missense_Mutation p.F218I 0.24 deleterious(0.04) benign(0.192) TCGA-T3-A92M-01 11 61196668 61196668 C T CPSF7 Missense_Mutation p.E57K 0.04 deleterious(0.01) probably_damaging(0.97) TCGA-T3-A92M-01 11 62298456 62298456 C T AHNAK Missense_Mutation p.E1145K 0.15 possibly_damaging(0.769) TCGA-T3-A92M-01 11 62652990 62652990 C T SLC3A2 Silent p.L453L 0.04 TCGA-T3-A92M-01 11 63978126 63978126 G A FERMT3 Silent p.Q68Q 0.21 TCGA-T3-A92M-01 11 65545761 65545761 G T AP5B1 Missense_Mutation p.P735T 0.12 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 11 67191138 67191138 C A CARNS1 Missense_Mutation p.P640Q 0.16 tolerated(0.15) possibly_damaging(0.852) TCGA-T3-A92M-01 11 7507148 7507148 G C OLFML1 Silent p.L14L 0.16 TCGA-T3-A92M-01 12 101442128 101442128 C A ANO4 Missense_Mutation p.L386I 0.09 tolerated(0.28) probably_damaging(0.96) TCGA-T3-A92M-01 12 109201498 109201498 G A SSH1 Silent p.I214I 0.11 TCGA-T3-A92M-01 12 109838970 109838970 G C MYO1H Missense_Mutation p.E199Q 0.18 deleterious(0) probably_damaging(1) TCGA-T3-A92M-01 12 118020146 118020146 C A KSR2 Missense_Mutation p.R397L 0.23 deleterious(0.04) possibly_damaging(0.823) TCGA-T3-A92M-01 12 120636522 120636522 C G RPLP0 Missense_Mutation p.K162N 0.15 deleterious(0.01) benign(0.395) TCGA-T3-A92M-01 12 130963477 130963477 C T RIMBP2 Missense_Mutation p.E28K 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-T3-A92M-01 12 2613674 2613674 G A CACNA1C Intron 0.16 TCGA-T3-A92M-01 12 33532820 33532820 C T SYT10 Missense_Mutation p.E483K 0.11 deleterious(0.02) benign(0.186) TCGA-T3-A92M-01 12 3702326 3702326 C T PRMT8 Missense_Mutation p.S388F 0.12 deleterious(0) benign(0.43) TCGA-T3-A92M-01 12 39079378 39079378 C A CPNE8 Silent p.G395G 0.16 TCGA-T3-A92M-01 12 39726736 39726736 C T KIF21A Silent p.A887A 0.18 TCGA-T3-A92M-01 12 49443973 49443973 G C KMT2D Nonsense_Mutation p.S1133* 0.26 TCGA-T3-A92M-01 12 51108199 51108199 G C DIP2B Missense_Mutation p.V891L 0.14 deleterious(0.05) benign(0.287) TCGA-T3-A92M-01 12 52963645 52963645 G T KRT74 Missense_Mutation p.Q378K 0.19 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 12 56350808 56350808 T A PMEL Missense_Mutation p.T427S 0.09 tolerated(0.18) benign(0.119) TCGA-T3-A92M-01 12 57550564 57550564 G A LRP1 Silent p.R474R 0.25 TCGA-T3-A92M-01 12 6619268 6619268 C G NCAPD2 Silent p.L77L 0.12 TCGA-T3-A92M-01 12 69229700 69229700 C A MDM2 Missense_Mutation p.S259Y 0.40 deleterious(0) probably_damaging(0.992) TCGA-T3-A92M-01 12 72050645 72050645 G A ZFC3H1 Intron 0.19 TCGA-T3-A92M-01 12 75785095 75785095 G A GLIPR1L2 Missense_Mutation p.D67N 0.06 tolerated(1) benign(0.003) TCGA-T3-A92M-01 12 9142258 9142258 G C KLRG1 Missense_Mutation p.M9I 0.10 tolerated(0.62) benign(0.001) TCGA-T3-A92M-01 12 94769780 94769780 G A CCDC41 Missense_Mutation p.S272L 0.09 deleterious(0) benign(0.379) TCGA-T3-A92M-01 12 95535261 95535261 C A FGD6 Nonsense_Mutation p.E914* 0.08 TCGA-T3-A92M-01 13 48523152 48523152 C T SUCLA2 Missense_Mutation p.D414N 0.34 tolerated(0.17) benign(0.103) TCGA-T3-A92M-01 13 50065014 50065014 G A SETDB2 Silent p.R670R 0.35 TCGA-T3-A92M-01 13 52343425 52343425 C T DHRS12 Silent p.V237V 0.36 TCGA-T3-A92M-01 14 103447296 103447296 C T CDC42BPB Silent p.Q318Q 0.23 TCGA-T3-A92M-01 14 104123904 104123904 C A KLC1 Missense_Mutation p.H95N 0.10 deleterious(0.02) probably_damaging(0.984) TCGA-T3-A92M-01 14 105453189 105453189 G C C14orf79 Missense_Mutation p.E141Q 0.14 tolerated(0.07) possibly_damaging(0.797) TCGA-T3-A92M-01 14 106235831 106235831 C G IGHG3 Missense_Mutation p.V293L 0.15 tolerated(0.11) benign(0.022) TCGA-T3-A92M-01 14 50605458 50605458 C G SOS2 Missense_Mutation p.D944H 0.12 deleterious(0) probably_damaging(0.981) TCGA-T3-A92M-01 14 54976658 54976658 C T CGRRF1 5'UTR 0.17 TCGA-T3-A92M-01 14 61190019 61190019 C G SIX4 Missense_Mutation p.K258N 0.14 deleterious(0.02) benign(0.075) TCGA-T3-A92M-01 14 64408433 64408433 A C SYNE2 Silent p.I54I 0.12 TCGA-T3-A92M-01 14 65008290 65008290 G T HSPA2 Silent p.V241V 0.07 TCGA-T3-A92M-01 14 65392796 65392796 C T CHURC1-FNTB Nonsense_Mutation p.Q83* 0.04 TCGA-T3-A92M-01 14 66188671 66188671 A G FUT8 Silent p.P338P 0.18 TCGA-T3-A92M-01 14 70177802 70177802 G C KIAA0247 3'UTR 0.14 TCGA-T3-A92M-01 14 75514858 75514858 A G MLH3 Missense_Mutation p.C501R 0.10 tolerated(0.34) benign(0.187) TCGA-T3-A92M-01 14 94004426 94004426 A G UNC79 Missense_Mutation p.K228R 0.16 tolerated(0.11) possibly_damaging(0.58) TCGA-T3-A92M-01 15 102358936 102358936 C T OR4F15 Missense_Mutation p.R183W 0.12 tolerated_low_confidence(0.16) probably_damaging(0.913) TCGA-T3-A92M-01 15 25425641 25425641 G C SNORD115-6 5'Flank 0.17 TCGA-T3-A92M-01 15 25479306 25479306 C A SNORD115-33 3'Flank 0.15 TCGA-T3-A92M-01 15 30024699 30024699 G A TJP1 Missense_Mutation p.P652L 0.21 deleterious(0) probably_damaging(0.984) TCGA-T3-A92M-01 15 34395407 34395407 G A PGBD4 Silent p.K225K 0.13 TCGA-T3-A92M-01 15 42058385 42058385 C T MGA Missense_Mutation p.S2702F 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-T3-A92M-01 15 43819433 43819433 G A MAP1A Missense_Mutation p.R1921K 0.20 benign(0.013) TCGA-T3-A92M-01 15 45007842 45007842 G A B2M Missense_Mutation p.E97K 0.23 tolerated(0.52) benign(0.023) TCGA-T3-A92M-01 15 45413348 45413348 C T DUOXA1 Missense_Mutation p.E93K 0.15 tolerated(0.2) benign(0.044) TCGA-T3-A92M-01 15 52487605 52487605 C G MYO5C Missense_Mutation p.R1682T 0.16 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 15 76452507 76452507 G A C15orf27 Missense_Mutation p.E152K 0.14 deleterious(0) possibly_damaging(0.858) TCGA-T3-A92M-01 15 78781045 78781045 G A IREB2 Missense_Mutation p.E670K 0.25 deleterious(0) possibly_damaging(0.888) TCGA-T3-A92M-01 15 79183867 79183867 C T MORF4L1 Nonsense_Mutation p.Q170* 0.18 TCGA-T3-A92M-01 15 80843596 80843596 G A ARNT2 Missense_Mutation p.V312M 0.29 deleterious(0) possibly_damaging(0.623) TCGA-T3-A92M-01 15 82336770 82336770 G C MEX3B Silent p.L147L 0.20 TCGA-T3-A92M-01 15 83437633 83437633 C G FSD2 Missense_Mutation p.E518Q 0.15 deleterious(0.01) probably_damaging(1) TCGA-T3-A92M-01 15 89400509 89400509 G A ACAN Missense_Mutation p.D1565N 0.18 deleterious(0.04) probably_damaging(0.968) TCGA-T3-A92M-01 16 1818085 1818085 G A MAPK8IP3 Missense_Mutation p.R1179Q 0.15 tolerated(0.42) benign(0.054) TCGA-T3-A92M-01 16 31500306 31500306 C A SLC5A2 Nonsense_Mutation p.Y462* 0.33 TCGA-T3-A92M-01 16 4042260 4042260 C G ADCY9 Missense_Mutation p.E698D 0.11 tolerated(0.08) benign(0.14) TCGA-T3-A92M-01 16 46694294 46694294 C G VPS35 3'UTR 0.09 TCGA-T3-A92M-01 16 47697612 47697612 G A PHKB Missense_Mutation p.R768K 0.09 tolerated(0.54) benign(0.217) TCGA-T3-A92M-01 16 50339699 50339699 C A ADCY7 Missense_Mutation p.S564Y 0.10 tolerated(0.08) possibly_damaging(0.882) TCGA-T3-A92M-01 16 55854317 55854317 C T CES1 Silent p.L256L 0.06 TCGA-T3-A92M-01 16 58032209 58032209 C G ZNF319 5'UTR 0.14 TCGA-T3-A92M-01 16 61935281 61935281 C G CDH8 Missense_Mutation p.D117H 0.27 deleterious(0) probably_damaging(0.97) TCGA-T3-A92M-01 16 66776474 66776474 G A DYNC1LI2 Silent p.L132L 0.17 TCGA-T3-A92M-01 16 76350415 76350415 G C CNTNAP4 Missense_Mutation p.R39T 0.27 deleterious(0) probably_damaging(0.967) TCGA-T3-A92M-01 17 12909106 12909106 G C ELAC2 Silent p.V278V 0.13 TCGA-T3-A92M-01 17 17076067 17076067 G C MPRIP Missense_Mutation p.K789N 0.19 deleterious(0.01) possibly_damaging(0.848) TCGA-T3-A92M-01 17 18692733 18692733 G C TVP23B Missense_Mutation p.R27T 0.09 tolerated(0.1) benign(0.001) TCGA-T3-A92M-01 17 19015785 19015785 G C SNORD3D RNA 0.08 TCGA-T3-A92M-01 17 2201249 2201249 G C SMG6 Missense_Mutation p.Q650E 0.17 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 17 2585085 2585085 G C PAFAH1B1 Missense_Mutation p.E408Q 0.28 tolerated(0.08) benign(0.058) TCGA-T3-A92M-01 17 26096140 26096140 G A NOS2 Missense_Mutation p.R633W 0.38 deleterious(0) possibly_damaging(0.773) TCGA-T3-A92M-01 17 27001327 27001327 G C SUPT6H Missense_Mutation p.D46H 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-T3-A92M-01 17 29221896 29221896 G C ATAD5 Missense_Mutation p.E1834Q 0.15 tolerated(0.41) possibly_damaging(0.517) TCGA-T3-A92M-01 17 3844845 3844845 C T ATP2A3 Missense_Mutation p.R550Q 0.20 tolerated(0.37) benign(0.314) TCGA-T3-A92M-01 17 38609380 38609380 G A IGFBP4 Missense_Mutation p.D165N 0.15 tolerated(0.44) benign(0.111) TCGA-T3-A92M-01 17 46690726 46690726 G C HOXB8 Silent p.V190V 0.12 TCGA-T3-A92M-01 17 48356735 48356735 A G TMEM92 3'UTR 0.17 TCGA-T3-A92M-01 17 59926549 59926549 C T BRIP1 Missense_Mutation p.E150K 0.15 deleterious(0.05) benign(0.23) TCGA-T3-A92M-01 17 71232843 71232843 G A C17orf80 Missense_Mutation p.E408K 0.16 tolerated(0.25) benign(0.029) TCGA-T3-A92M-01 17 7124970 7124970 G C ACADVL Missense_Mutation p.Q220H 0.13 deleterious(0.01) probably_damaging(1) TCGA-T3-A92M-01 17 7128306 7128306 G A ACADVL Missense_Mutation p.A643T 0.21 tolerated(0.52) benign(0.021) TCGA-T3-A92M-01 17 73498195 73498195 G C CASKIN2 Nonsense_Mutation p.S987* 0.17 TCGA-T3-A92M-01 17 7484303 7484303 C G CD68 Missense_Mutation p.L284V 0.12 tolerated(0.07) benign(0.203) TCGA-T3-A92M-01 17 7578370 7578370 C A TP53 Splice_Site p.X187_splice 0.43 TCGA-T3-A92M-01 17 80790224 80790225 - CA ZNF750 Frame_Shift_Ins p.E36Vfs*10 0.28 TCGA-T3-A92M-01 18 30092206 30092206 C A WBP11P1 RNA 0.50 TCGA-T3-A92M-01 19 10418965 10418965 C T ZGLP1 Silent p.L131L 0.30 TCGA-T3-A92M-01 19 10444069 10444069 G A RAVER1 Silent p.L56L 0.08 TCGA-T3-A92M-01 19 11624710 11624710 G A ECSIT Silent p.F141F 0.33 TCGA-T3-A92M-01 19 12090726 12090726 G T ZNF763 3'UTR 0.09 TCGA-T3-A92M-01 19 12186572 12186572 C A ZNF844 Missense_Mutation p.L213I 0.33 tolerated(0.07) possibly_damaging(0.874) TCGA-T3-A92M-01 19 12461186 12461186 G A ZNF442 Missense_Mutation p.H405Y 0.12 tolerated(1) possibly_damaging(0.85) TCGA-T3-A92M-01 19 15794516 15794516 C G CYP4F12 Missense_Mutation p.F287L 0.15 tolerated(1) benign(0) TCGA-T3-A92M-01 19 17973530 17973530 C G RPL18A Intron 0.06 TCGA-T3-A92M-01 19 19313613 19313613 C T NR2C2AP Nonsense_Mutation p.W39* 0.14 TCGA-T3-A92M-01 19 20727911 20727911 C G ZNF737 Missense_Mutation p.E366D 0.13 deleterious(0.02) benign(0.004) TCGA-T3-A92M-01 19 21116874 21116874 G T ZNF85 Missense_Mutation p.K16N 0.14 deleterious(0) benign(0.348) TCGA-T3-A92M-01 19 2213430 2213430 G C DOT1L Intron 0.17 TCGA-T3-A92M-01 19 22157097 22157097 G C ZNF208 Missense_Mutation p.H247D 0.15 deleterious(0.01) possibly_damaging(0.638) TCGA-T3-A92M-01 19 22952004 22952004 G A ZNF99 Silent p.F42F 0.09 TCGA-T3-A92M-01 19 33077895 33077895 G A PDCD5 Intron 0.17 TCGA-T3-A92M-01 19 3576258 3576258 G A HMG20B Splice_Site p.X158_splice 0.20 TCGA-T3-A92M-01 19 3576599 3576599 G A HMG20B Missense_Mutation p.E190K 0.12 deleterious(0) possibly_damaging(0.524) TCGA-T3-A92M-01 19 3600561 3600561 C T TBXA2R Silent p.L24L 0.10 TCGA-T3-A92M-01 19 36508835 36508835 G C CLIP3 Silent p.A414A 0.10 TCGA-T3-A92M-01 19 37038219 37038219 C T ZNF529 Missense_Mutation p.R414K 0.13 tolerated(0.22) probably_damaging(0.988) TCGA-T3-A92M-01 19 3759710 3759710 C G APBA3 Missense_Mutation p.E185Q 0.16 tolerated(0.17) benign(0.025) TCGA-T3-A92M-01 19 37618875 37618875 A G ZNF420 Missense_Mutation p.I328V 0.37 tolerated(0.12) benign(0.112) TCGA-T3-A92M-01 19 37677480 37677480 T A ZNF585B Missense_Mutation p.H320L 0.26 deleterious(0) probably_damaging(0.996) TCGA-T3-A92M-01 19 39090740 39090740 C T MAP4K1 Missense_Mutation p.D529N 0.16 deleterious(0.01) possibly_damaging(0.543) TCGA-T3-A92M-01 19 3942109 3942109 G A NMRK2 Silent p.E177E 0.15 TCGA-T3-A92M-01 19 44127506 44127506 C G CADM4 Missense_Mutation p.K381N 0.21 tolerated(0.2) possibly_damaging(0.534) TCGA-T3-A92M-01 19 44377448 44377448 C A ZNF404 Missense_Mutation p.K306N 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-T3-A92M-01 19 44377562 44377562 C G ZNF404 Silent p.V268V 0.14 TCGA-T3-A92M-01 19 44891323 44891323 G A ZNF285 Missense_Mutation p.H362Y 0.17 deleterious(0.03) possibly_damaging(0.808) TCGA-T3-A92M-01 19 45028269 45028269 G A CEACAM20 RNA 0.13 TCGA-T3-A92M-01 19 48343025 48343025 T G CRX Missense_Mutation p.L234R 0.04 deleterious(0) probably_damaging(0.998) TCGA-T3-A92M-01 19 49261419 49261419 C T FGF21 Missense_Mutation p.S191L 0.11 deleterious(0.04) possibly_damaging(0.808) TCGA-T3-A92M-01 19 4930834 4930834 C G MIR4747 5'Flank 0.15 TCGA-T3-A92M-01 19 49933929 49933929 G C SLC17A7 Missense_Mutation p.F510L 0.17 tolerated(0.12) benign(0.007) TCGA-T3-A92M-01 19 50093194 50093194 C G PRRG2 Missense_Mutation p.L159V 0.20 tolerated(0.34) benign(0.002) TCGA-T3-A92M-01 19 50247582 50247582 C G TSKS Missense_Mutation p.E423Q 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-T3-A92M-01 19 52537040 52537040 C G ZNF432 Missense_Mutation p.R631T 0.20 deleterious(0) benign(0.215) TCGA-T3-A92M-01 19 5258057 5258057 T A PTPRS Missense_Mutation p.Y226F 0.43 tolerated(0.1) probably_damaging(1) TCGA-T3-A92M-01 19 54445537 54445537 C A CACNG7 Nonsense_Mutation p.S273* 0.27 TCGA-T3-A92M-01 19 54656227 54656227 G C CNOT3 Missense_Mutation p.E590Q 0.04 tolerated(0.12) benign(0.403) TCGA-T3-A92M-01 19 54668242 54668242 G C TMC4 Missense_Mutation p.L353V 0.17 tolerated(0.19) benign(0.059) TCGA-T3-A92M-01 19 55086487 55086487 G A LILRA2 Silent p.E214E 0.07 TCGA-T3-A92M-01 19 55597234 55597234 G C EPS8L1 Missense_Mutation p.E471Q 0.13 tolerated(0.35) benign(0.005) TCGA-T3-A92M-01 19 56200300 56200300 C G EPN1 Missense_Mutation p.S292R 0.43 deleterious(0) unknown(0) TCGA-T3-A92M-01 19 5649944 5649944 G A SAFB Missense_Mutation p.E386K 0.11 tolerated(0.75) benign(0.348) TCGA-T3-A92M-01 19 57640702 57640702 G C USP29 Missense_Mutation p.R220T 0.12 deleterious(0.04) benign(0.011) TCGA-T3-A92M-01 19 5768242 5768242 C A CATSPERD Missense_Mutation p.F541L 0.16 deleterious(0) benign(0.341) TCGA-T3-A92M-01 19 58152590 58152590 C T ZNF211 Nonsense_Mutation p.Q311* 0.16 TCGA-T3-A92M-01 19 58806451 58806451 A G ZNF8 Missense_Mutation p.E426G 0.18 tolerated(0.19) possibly_damaging(0.515) TCGA-T3-A92M-01 19 6141576 6141576 C G ACSBG2 Missense_Mutation p.Q8E 0.12 tolerated_low_confidence(0.63) benign(0) TCGA-T3-A92M-01 19 6843175 6843175 C G VAV1 Silent p.L670L 0.26 TCGA-T3-A92M-01 19 7964750 7964750 G A AC010336.1 Nonsense_Mutation p.Q173* 0.11 TCGA-T3-A92M-01 19 877178 877178 C T MED16 Silent p.L452L 0.19 TCGA-T3-A92M-01 1 10425596 10425596 C G KIF1B Missense_Mutation p.Q1502E 0.22 tolerated(0.76) possibly_damaging(0.878) TCGA-T3-A92M-01 1 11008255 11008255 G C C1orf127 Nonsense_Mutation p.S646* 0.17 TCGA-T3-A92M-01 1 111730772 111730772 C G DENND2D Missense_Mutation p.K440N 0.14 tolerated(0.12) benign(0.005) TCGA-T3-A92M-01 1 113638590 113638590 G C LRIG2 Missense_Mutation p.E300Q 0.14 tolerated(0.06) benign(0.011) TCGA-T3-A92M-01 1 115260711 115260711 G C CSDE1 3'UTR 0.21 TCGA-T3-A92M-01 1 1153085 1153085 C T SDF4 Intron 0.10 TCGA-T3-A92M-01 1 118484405 118484405 C G WDR3 Missense_Mutation p.I308M 0.14 tolerated(0.09) benign(0.125) TCGA-T3-A92M-01 1 12061511 12061511 C T MFN2 Silent p.G290G 0.10 TCGA-T3-A92M-01 1 145074987 145074987 C T PDE4DIP Missense_Mutation p.G103S 0.14 tolerated_low_confidence(0.06) benign(0) TCGA-T3-A92M-01 1 149871895 149871895 G A BOLA1 Missense_Mutation p.E95K 0.14 deleterious(0.04) possibly_damaging(0.529) TCGA-T3-A92M-01 1 149877312 149877312 G C SV2A Intron 0.19 TCGA-T3-A92M-01 1 149885503 149885503 G T SV2A 5'UTR 0.21 TCGA-T3-A92M-01 1 151021313 151021313 C T C1orf56 Silent p.F330F 0.31 TCGA-T3-A92M-01 1 152280236 152280236 C T FLG Missense_Mutation p.E2376K 0.14 benign(0.292) TCGA-T3-A92M-01 1 152284408 152284408 G C FLG Missense_Mutation p.P985R 0.13 benign(0.347) TCGA-T3-A92M-01 1 152733114 152733114 C T KPRP Silent p.I350I 0.15 TCGA-T3-A92M-01 1 153533777 153533777 G A S100A2 3'UTR 0.22 TCGA-T3-A92M-01 1 159847213 159847213 G A CCDC19 Missense_Mutation p.R362W 0.28 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 1 159922313 159922313 C G SLAMF9 Missense_Mutation p.E135Q 0.18 tolerated(0.31) benign(0.047) TCGA-T3-A92M-01 1 160456943 160456943 C G SLAMF6 Missense_Mutation p.R301T 0.11 tolerated(0.28) benign(0) TCGA-T3-A92M-01 1 170015858 170015858 C G KIFAP3 Missense_Mutation p.G105A 0.11 tolerated(0.7) benign(0.004) TCGA-T3-A92M-01 1 170024529 170024529 G C KIFAP3 Silent p.L27L 0.14 TCGA-T3-A92M-01 1 175375816 175375816 T G TNR Missense_Mutation p.N12T 0.32 tolerated_low_confidence(0.13) benign(0.156) TCGA-T3-A92M-01 1 177198981 177198981 G A BRINP2 5'UTR 0.12 TCGA-T3-A92M-01 1 177913762 177913762 C G SEC16B Missense_Mutation p.Q605H 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-T3-A92M-01 1 178834277 178834277 G A ANGPTL1 Missense_Mutation p.S212F 0.12 deleterious(0.04) benign(0.212) TCGA-T3-A92M-01 1 183201866 183201866 C G LAMC2 Silent p.L698L 0.04 TCGA-T3-A92M-01 1 201355802 201355802 C T LAD1 Silent p.K229K 0.11 TCGA-T3-A92M-01 1 212208826 212208826 C G INTS7 5'UTR 0.30 TCGA-T3-A92M-01 1 215752340 215752340 T C KCTD3 Intron 0.23 TCGA-T3-A92M-01 1 222750892 222750892 C A TAF1A Nonsense_Mutation p.E167* 0.12 TCGA-T3-A92M-01 1 228113135 228113135 G A WNT9A Missense_Mutation p.R61W 0.14 deleterious(0.03) probably_damaging(0.938) TCGA-T3-A92M-01 1 233344363 233344363 C T PCNXL2 Missense_Mutation p.D922N 0.08 tolerated(0.09) benign(0.021) TCGA-T3-A92M-01 1 23399802 23399802 C G KDM1A Nonsense_Mutation p.S547* 0.11 TCGA-T3-A92M-01 1 236647022 236647022 G A EDARADD 3'Flank 0.08 TCGA-T3-A92M-01 1 242253286 242253286 C T PLD5 Nonsense_Mutation p.W494* 0.12 TCGA-T3-A92M-01 1 245021528 245021528 C G HNRNPU Missense_Mutation p.D427H 0.16 tolerated(0.12) unknown(0) TCGA-T3-A92M-01 1 245027113 245027113 G T HNRNPU Missense_Mutation p.P166Q 0.17 tolerated(0.56) possibly_damaging(0.884) TCGA-T3-A92M-01 1 248551779 248551779 C A OR2T6 Nonsense_Mutation p.Y290* 0.26 TCGA-T3-A92M-01 1 248814164 248814164 C T OR2T27 Missense_Mutation p.V8M 0.06 tolerated(0.28) benign(0.003) TCGA-T3-A92M-01 1 26513716 26513716 G A CNKSR1 Missense_Mutation p.D456N 0.24 deleterious(0.01) possibly_damaging(0.79) TCGA-T3-A92M-01 1 26514792 26514792 G A CNKSR1 Missense_Mutation p.E508K 0.12 deleterious(0.05) benign(0.179) TCGA-T3-A92M-01 1 28559461 28559461 C T DNAJC8 Missense_Mutation p.E17K 0.08 tolerated(0.08) unknown(0) TCGA-T3-A92M-01 1 33402809 33402809 G T RNF19B Missense_Mutation p.H599Q 0.10 deleterious_low_confidence(0.03) benign(0.289) TCGA-T3-A92M-01 1 3350431 3350431 G A PRDM16 3'UTR 0.21 TCGA-T3-A92M-01 1 36499868 36499868 C G AGO3 Nonsense_Mutation p.S562* 0.10 TCGA-T3-A92M-01 1 39798523 39798523 G A MACF1 Intron 0.15 TCGA-T3-A92M-01 1 39798699 39798699 G A MACF1 Intron 0.11 TCGA-T3-A92M-01 1 39838149 39838150 AG - MACF1 Splice_Site p.X2304_splice 0.09 TCGA-T3-A92M-01 1 52819088 52819088 C T CC2D1B 3'UTR 0.40 TCGA-T3-A92M-01 1 53493743 53493743 G A SCP2 Silent p.E446E 0.14 TCGA-T3-A92M-01 1 54607069 54607069 G A CDCP2 Silent p.V155V 0.20 TCGA-T3-A92M-01 1 57756644 57756644 C G DAB1 Missense_Mutation p.R20T 0.15 deleterious(0.02) benign(0.12) TCGA-T3-A92M-01 1 62915974 62915974 T A USP1 Silent p.L560L 0.29 TCGA-T3-A92M-01 1 7913107 7913107 G C UTS2 Intron 0.27 TCGA-T3-A92M-01 1 86954766 86954766 G C CLCA1 Missense_Mutation p.E424Q 0.21 tolerated(0.08) benign(0.211) TCGA-T3-A92M-01 20 18794486 18794486 C G SCP2D1 Silent p.P9P 0.08 TCGA-T3-A92M-01 20 19937259 19937259 C G RIN2 Missense_Mutation p.S102R 0.22 tolerated_low_confidence(0.21) benign(0.039) TCGA-T3-A92M-01 20 29960737 29960737 G C DEFB118 Missense_Mutation p.D46H 0.10 deleterious(0.05) benign(0.234) TCGA-T3-A92M-01 20 3736145 3736145 T C C20orf27 Missense_Mutation p.K116R 0.21 tolerated(0.94) benign(0.004) TCGA-T3-A92M-01 20 39832858 39832858 G A ZHX3 Silent p.I233I 0.15 TCGA-T3-A92M-01 20 4164241 4164241 C T SMOX Silent p.S490S 0.14 TCGA-T3-A92M-01 20 43938283 43938283 C T RBPJL Missense_Mutation p.R70W 0.47 tolerated(0.09) benign(0) TCGA-T3-A92M-01 20 61542690 61542690 G C DIDO1 Missense_Mutation p.S92C 0.19 benign(0.03) TCGA-T3-A92M-01 21 15517023 15517023 G A LIPI Nonsense_Mutation p.Q427* 0.10 TCGA-T3-A92M-01 21 16337215 16337215 G C NRIP1 Nonsense_Mutation p.S1100* 0.17 TCGA-T3-A92M-01 21 19169332 19169332 C G C21orf91 Missense_Mutation p.K77N 0.15 deleterious(0) probably_damaging(1) TCGA-T3-A92M-01 21 30339475 30339475 G C LTN1 Silent p.L492L 0.19 TCGA-T3-A92M-01 21 34903824 34903824 C T GART Missense_Mutation p.E190K 0.13 deleterious(0) probably_damaging(0.993) TCGA-T3-A92M-01 21 36206728 36206728 G C RUNX1 Missense_Mutation p.Q262E 0.21 deleterious(0.02) benign(0.356) TCGA-T3-A92M-01 21 38600577 38600577 G A DSCR3 Missense_Mutation p.S202L 0.14 deleterious(0.03) benign(0.212) TCGA-T3-A92M-01 22 18301781 18301781 G C MICAL3 Missense_Mutation p.L1216V 0.16 benign(0.001) TCGA-T3-A92M-01 22 26239822 26239822 C G MYO18B Missense_Mutation p.S1110W 0.16 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 22 37637671 37637671 G C RAC2 Missense_Mutation p.I21M 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.73) TCGA-T3-A92M-01 22 42126602 42126602 G C MEI1 Missense_Mutation p.E353Q 0.16 deleterious(0) probably_damaging(0.991) TCGA-T3-A92M-01 22 50689234 50689234 C T HDAC10 Missense_Mutation p.E54K 0.20 deleterious(0.02) benign(0.322) TCGA-T3-A92M-01 2 109347330 109347330 G C RANBP2 Missense_Mutation p.E81Q 0.12 tolerated(0.13) benign(0.365) TCGA-T3-A92M-01 2 116066899 116066899 A G DPP10 Missense_Mutation p.I53V 0.13 tolerated(0.27) possibly_damaging(0.54) TCGA-T3-A92M-01 2 11765324 11765324 C A GREB1 Missense_Mutation p.P1398T 0.33 tolerated(0.11) benign(0.138) TCGA-T3-A92M-01 2 128930144 128930144 C T UGGT1 Intron 0.09 TCGA-T3-A92M-01 2 128930293 128930293 C T UGGT1 Missense_Mutation p.S1084F 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-T3-A92M-01 2 141473613 141473613 A G LRP1B Silent p.G1984G 0.21 TCGA-T3-A92M-01 2 163134157 163134157 C G IFIH1 Missense_Mutation p.L604F 0.13 deleterious(0) probably_damaging(1) TCGA-T3-A92M-01 2 179398781 179398781 G A TTN Silent p.Y34187Y 0.12 TCGA-T3-A92M-01 2 179579932 179579932 G A TTN Missense_Mutation p.H8661Y 0.10 TCGA-T3-A92M-01 2 197708800 197708800 C T PGAP1 Splice_Site p.X780_splice 0.43 TCGA-T3-A92M-01 2 198274541 198274541 G C SF3B1 Missense_Mutation p.S286C 0.14 tolerated(0.05) possibly_damaging(0.563) TCGA-T3-A92M-01 2 201515727 201515727 G C AOX1 Missense_Mutation p.D960H 0.13 deleterious(0.02) benign(0.078) TCGA-T3-A92M-01 2 211539656 211539656 G T CPS1 Missense_Mutation p.A1384S 0.25 tolerated(0.05) probably_damaging(0.936) TCGA-T3-A92M-01 2 216003049 216003049 C T ABCA12 5'UTR 0.29 TCGA-T3-A92M-01 2 219134874 219134874 G T AAMP 5'UTR 0.27 TCGA-T3-A92M-01 2 220416900 220416900 C T OBSL1 Missense_Mutation p.E1783K 0.17 tolerated(0.25) possibly_damaging(0.901) TCGA-T3-A92M-01 2 238253245 238253245 C T COL6A3 Silent p.K2472K 0.10 TCGA-T3-A92M-01 2 242683097 242683097 G A D2HGDH Missense_Mutation p.R184Q 0.28 tolerated(0.41) benign(0.026) TCGA-T3-A92M-01 2 27587375 27587375 G T EIF2B4 Silent p.V508V 0.17 TCGA-T3-A92M-01 2 27587687 27587687 C A EIF2B4 Missense_Mutation p.A444S 0.17 deleterious(0.03) possibly_damaging(0.891) TCGA-T3-A92M-01 2 27676309 27676309 C A IFT172 Missense_Mutation p.C1298F 0.17 tolerated(0.1) possibly_damaging(0.549) TCGA-T3-A92M-01 2 44931436 44931436 G C CAMKMT Missense_Mutation p.E131Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-T3-A92M-01 2 50758384 50758384 C T NRXN1 Silent p.V816V 0.09 TCGA-T3-A92M-01 2 55254574 55254574 G A RTN4 Nonsense_Mutation p.Q221* 0.17 TCGA-T3-A92M-01 2 61546322 61546322 G C USP34 Missense_Mutation p.L1052V 0.08 deleterious(0.04) benign(0.222) TCGA-T3-A92M-01 2 74386310 74386310 G A MOB1A Missense_Mutation p.H161Y 0.15 deleterious(0.03) probably_damaging(0.981) TCGA-T3-A92M-01 2 85892750 85892750 C T SFTPB Silent p.A199A 0.16 TCGA-T3-A92M-01 2 86832164 86832164 G C RNF103 Nonsense_Mutation p.S287* 0.08 TCGA-T3-A92M-01 2 9515039 9515039 A G ASAP2 Missense_Mutation p.D571G 0.30 deleterious(0) possibly_damaging(0.867) TCGA-T3-A92M-01 2 98274969 98274969 T C ACTR1B Missense_Mutation p.Y193C 0.10 deleterious(0.01) probably_damaging(0.955) TCGA-T3-A92M-01 2 99256635 99256635 G A MGAT4A Silent p.F359F 0.10 TCGA-T3-A92M-01 3 100275640 100275640 A T TMEM45A Missense_Mutation p.H76L 0.23 deleterious(0.01) benign(0.118) TCGA-T3-A92M-01 3 100467383 100467383 C T TFG 3'UTR 0.14 TCGA-T3-A92M-01 3 109047876 109047876 G A DPPA4 Missense_Mutation p.H247Y 0.13 deleterious(0.01) possibly_damaging(0.876) TCGA-T3-A92M-01 3 111766608 111766608 C G TMPRSS7 Missense_Mutation p.F125L 0.17 tolerated(1) benign(0.001) TCGA-T3-A92M-01 3 119134049 119134049 G A ARHGAP31 Silent p.K1091K 0.11 TCGA-T3-A92M-01 3 121209049 121209049 G A POLQ Missense_Mutation p.S910L 0.17 deleterious(0.03) benign(0.093) TCGA-T3-A92M-01 3 124811010 124811010 C G SLC12A8 Missense_Mutation p.D580H 0.13 tolerated(0.16) benign(0.322) TCGA-T3-A92M-01 3 128758806 128758806 G C EFCC1 3'UTR 0.22 TCGA-T3-A92M-01 3 129151307 129151307 G C MBD4 Intron 0.15 TCGA-T3-A92M-01 3 143100949 143100949 C T SLC9A9 Missense_Mutation p.V493M 0.06 deleterious(0.01) benign(0.066) TCGA-T3-A92M-01 3 148757011 148757011 G C HLTF Missense_Mutation p.S874C 0.14 deleterious(0.03) probably_damaging(0.954) TCGA-T3-A92M-01 3 15116352 15116352 C T ZFYVE20 Missense_Mutation p.R431H 0.25 tolerated(0.24) benign(0.001) TCGA-T3-A92M-01 3 153994063 153994063 C T DHX36 Missense_Mutation p.R975K 0.08 tolerated(0.91) benign(0.005) TCGA-T3-A92M-01 3 168802678 168802678 C G MECOM 3'UTR 0.08 TCGA-T3-A92M-01 3 169558081 169558081 G T LRRC31 Missense_Mutation p.H450N 0.07 deleterious(0.01) possibly_damaging(0.814) TCGA-T3-A92M-01 3 169644521 169644521 C T SAMD7 Silent p.L157L 0.07 TCGA-T3-A92M-01 3 170587973 170587973 G A RPL22L1 5'UTR 0.11 TCGA-T3-A92M-01 3 173997312 173997312 C T NLGN1 Silent p.D507D 0.06 TCGA-T3-A92M-01 3 183665224 183665224 C T ABCC5 Missense_Mutation p.R1101Q 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-T3-A92M-01 3 183861984 183861984 A C EIF2B5 Missense_Mutation p.H656P 0.25 deleterious(0.02) benign(0.226) TCGA-T3-A92M-01 3 186572338 186572339 - T ADIPOQ Frame_Shift_Ins p.D195Gfs*28 0.12 TCGA-T3-A92M-01 3 193232601 193232601 G C ATP13A4 Missense_Mutation p.I40M 0.13 deleterious(0.04) benign(0.159) TCGA-T3-A92M-01 3 194151043 194151043 A G ATP13A3 Missense_Mutation p.Y876H 0.14 deleterious(0) possibly_damaging(0.58) TCGA-T3-A92M-01 3 194151922 194151922 C G ATP13A3 Missense_Mutation p.E819Q 0.07 tolerated(0.17) benign(0.196) TCGA-T3-A92M-01 3 195516530 195516530 G C MUC4 Missense_Mutation p.Q641E 0.10 unknown(0) TCGA-T3-A92M-01 3 195799003 195799003 T C TFRC Missense_Mutation p.Y152C 0.11 deleterious(0.05) probably_damaging(0.927) TCGA-T3-A92M-01 3 195960146 195960146 C T SLC51A 3'UTR 0.50 TCGA-T3-A92M-01 3 196198983 196198983 G A RNF168 Missense_Mutation p.H475Y 0.09 deleterious(0.02) benign(0.105) TCGA-T3-A92M-01 3 196210645 196210645 G C RNF168 Missense_Mutation p.Q226E 0.12 deleterious(0.05) benign(0.062) TCGA-T3-A92M-01 3 196388126 196388126 C G NRROS Missense_Mutation p.L538V 0.12 deleterious(0) probably_damaging(1) TCGA-T3-A92M-01 3 197423875 197423875 G C KIAA0226 Missense_Mutation p.S436C 0.07 deleterious(0) probably_damaging(0.971) TCGA-T3-A92M-01 3 21792472 21792472 G A ZNF385D 5'UTR 0.17 TCGA-T3-A92M-01 3 3139829 3139829 G A IL5RA Silent p.L171L 0.22 TCGA-T3-A92M-01 3 38051768 38051768 T G PLCD1 Splice_Site p.X352_splice 0.18 TCGA-T3-A92M-01 3 44776052 44776052 G A ZNF501 Missense_Mutation p.E47K 0.34 deleterious_low_confidence(0.03) benign(0.34) TCGA-T3-A92M-01 3 45785086 45785087 - T SACM1L Frame_Shift_Ins p.I566Yfs*76 0.16 TCGA-T3-A92M-01 3 46009654 46009654 G C FYCO1 Missense_Mutation p.P391R 0.12 tolerated(0.4) benign(0.002) TCGA-T3-A92M-01 3 52003451 52003451 C T ABHD14B Silent p.G208G 0.25 TCGA-T3-A92M-01 3 52702585 52702585 C G PBRM1 Missense_Mutation p.E105Q 0.18 deleterious(0.01) benign(0.284) TCGA-T3-A92M-01 3 8794849 8794849 G C OXTR Missense_Mutation p.I328M 0.21 deleterious(0) probably_damaging(0.998) TCGA-T3-A92M-01 3 93593126 93593126 G A PROS1 Missense_Mutation p.S665L 0.13 deleterious(0) probably_damaging(0.931) TCGA-T3-A92M-01 3 93803224 93803224 G T NSUN3 Silent p.G132G 0.10 TCGA-T3-A92M-01 3 99514434 99514434 C A COL8A1 Silent p.G563G 0.25 TCGA-T3-A92M-01 4 104079981 104079981 C T CENPE Silent p.E888E 0.23 TCGA-T3-A92M-01 4 122079850 122079850 C T TNIP3 Missense_Mutation p.E146K 0.16 deleterious(0.04) benign(0.062) TCGA-T3-A92M-01 4 126240524 126240524 C A FAT4 Silent p.V986V 0.12 TCGA-T3-A92M-01 4 126240528 126240528 G T FAT4 Missense_Mutation p.D988Y 0.13 probably_damaging(0.999) TCGA-T3-A92M-01 4 126408679 126408679 T C FAT4 Silent p.T4332T 0.25 TCGA-T3-A92M-01 4 155507691 155507691 G T FGA Missense_Mutation p.S297Y 0.12 tolerated_low_confidence(0.62) benign(0) TCGA-T3-A92M-01 4 156276899 156276899 C G MAP9 Missense_Mutation p.R420T 0.18 deleterious(0.03) benign(0.015) TCGA-T3-A92M-01 4 159568119 159568119 T A RXFP1 Missense_Mutation p.L508M 0.28 deleterious(0.01) benign(0.396) TCGA-T3-A92M-01 4 17506017 17506017 T G QDPR Missense_Mutation p.N94H 0.15 deleterious(0) possibly_damaging(0.9) TCGA-T3-A92M-01 4 187177228 187177228 C A KLKB1 Missense_Mutation p.F524L 0.30 deleterious(0.01) possibly_damaging(0.582) TCGA-T3-A92M-01 4 25418140 25418140 C G ANAPC4 Silent p.L665L 0.19 TCGA-T3-A92M-01 4 40337915 40337915 C G CHRNA9 Missense_Mutation p.L46V 0.18 tolerated(0.21) probably_damaging(1) TCGA-T3-A92M-01 4 419668 419668 G C ABCA11P RNA 0.24 TCGA-T3-A92M-01 4 6864840 6864840 T G KIAA0232 Missense_Mutation p.Y911D 0.26 deleterious(0.01) probably_damaging(1) TCGA-T3-A92M-01 4 73013431 73013431 C A NPFFR2 Missense_Mutation p.H491N 0.60 tolerated_low_confidence(0.23) benign(0.09) TCGA-T3-A92M-01 4 83378153 83378153 C G ENOPH1 Nonsense_Mutation p.S203* 0.13 TCGA-T3-A92M-01 5 1065456 1065456 C G SLC12A7 Missense_Mutation p.M793I 0.05 tolerated(0.37) benign(0.064) TCGA-T3-A92M-01 5 109155467 109155467 A G MAN2A1 Missense_Mutation p.Y736C 0.17 deleterious(0.02) probably_damaging(0.954) TCGA-T3-A92M-01 5 111500773 111500773 G C EPB41L4A Missense_Mutation p.Q659E 0.14 tolerated_low_confidence(0.14) benign(0.002) TCGA-T3-A92M-01 5 112860722 112860722 C G YTHDC2 Nonsense_Mutation p.S108* 0.13 TCGA-T3-A92M-01 5 126171934 126171934 A G LMNB1 Missense_Mutation p.N580S 0.12 tolerated(1) benign(0.016) TCGA-T3-A92M-01 5 131726594 131726595 - A SLC22A5 Frame_Shift_Ins p.D423Rfs*100 0.15 TCGA-T3-A92M-01 5 134191201 134191201 A G C5orf24 3'UTR 0.15 TCGA-T3-A92M-01 5 135398968 135398968 C G TGFBI 3'UTR 0.25 TCGA-T3-A92M-01 5 140229690 140229690 C A PCDHA9 Missense_Mutation p.A537E 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-T3-A92M-01 5 140256172 140256172 T G PCDHA12 Missense_Mutation p.I372S 0.15 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-T3-A92M-01 5 140347739 140347739 A G PCDHAC2 Missense_Mutation p.N463S 0.14 deleterious(0) probably_damaging(0.99) TCGA-T3-A92M-01 5 140432443 140432443 A C PCDHB1 Missense_Mutation p.E463A 0.23 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 5 140516722 140516722 C A PCDHB5 Missense_Mutation p.A569E 0.17 deleterious_low_confidence(0.01) benign(0.197) TCGA-T3-A92M-01 5 140593655 140593655 C T PCDHB13 5'UTR 0.23 TCGA-T3-A92M-01 5 140741740 140741740 G A PCDHGB2 Missense_Mutation p.E680K 0.14 tolerated(0.76) benign(0.004) TCGA-T3-A92M-01 5 1443220 1443220 G C SLC6A3 Silent p.L31L 0.20 TCGA-T3-A92M-01 5 15937124 15937124 C G FBXL7 Silent p.L435L 0.08 TCGA-T3-A92M-01 5 162911099 162911099 G C HMMR Missense_Mutation p.E604Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-T3-A92M-01 5 167653184 167653184 G C TENM2 Missense_Mutation p.D1734H 0.11 tolerated(0.07) probably_damaging(0.982) TCGA-T3-A92M-01 5 180687775 180687775 G A TRIM52 Missense_Mutation p.L14F 0.12 deleterious(0) probably_damaging(0.994) TCGA-T3-A92M-01 5 31294357 31294357 G A CDH6 Missense_Mutation p.D173N 0.13 tolerated(0.35) benign(0.011) TCGA-T3-A92M-01 5 33984673 33984673 C G SLC45A2 Missense_Mutation p.G6R 0.21 deleterious_low_confidence(0) benign(0.02) TCGA-T3-A92M-01 5 50685661 50685661 C T ISL1 Silent p.L220L 0.08 TCGA-T3-A92M-01 5 75936882 75936882 G C IQGAP2 Missense_Mutation p.R683T 0.15 deleterious(0) probably_damaging(0.971) TCGA-T3-A92M-01 5 82785939 82785939 G A VCAN Silent p.P31P 0.17 TCGA-T3-A92M-01 6 152614805 152614805 G A SYNE1 Missense_Mutation p.T5977M 0.21 probably_damaging(0.939) TCGA-T3-A92M-01 6 17539623 17539623 G C CAP2 Missense_Mutation p.E254Q 0.20 tolerated(0.24) possibly_damaging(0.533) TCGA-T3-A92M-01 6 26216705 26216705 G A HIST1H2BG Missense_Mutation p.S56L 0.13 deleterious_low_confidence(0.05) benign(0.195) TCGA-T3-A92M-01 6 27101280 27101280 G A HIST1H2AG 3'UTR 0.09 TCGA-T3-A92M-01 6 27782126 27782126 C G HIST1H2AJ 3'UTR 0.19 TCGA-T3-A92M-01 6 2785567 2785567 G C WRNIP1 3'UTR 0.12 TCGA-T3-A92M-01 6 29455369 29455369 G A MAS1L Missense_Mutation p.A104V 0.30 tolerated(0.16) benign(0.359) TCGA-T3-A92M-01 6 29910797 29910797 G T HLA-A Nonsense_Mutation p.E113* 0.48 TCGA-T3-A92M-01 6 31541551 31541551 G A LTA 3'UTR 0.26 TCGA-T3-A92M-01 6 31593070 31593070 G A PRRC2A Missense_Mutation p.G196R 0.12 unknown(0) TCGA-T3-A92M-01 6 31732230 31732230 G A SAPCD1 Silent p.Q153Q 0.22 TCGA-T3-A92M-01 6 31733811 31733811 G T VWA7 Nonsense_Mutation p.S783* 0.09 TCGA-T3-A92M-01 6 31939957 31939957 G C STK19 Missense_Mutation p.G62R 0.13 tolerated_low_confidence(0.07) benign(0.007) TCGA-T3-A92M-01 6 31948225 31948225 C T STK19 Intron 0.18 TCGA-T3-A92M-01 6 32261774 32261774 T A C6orf10 Nonsense_Mutation p.K226* 0.16 TCGA-T3-A92M-01 6 36263163 36263163 G A PNPLA1 Missense_Mutation p.R246Q 0.10 tolerated(0.42) benign(0.341) TCGA-T3-A92M-01 6 36842552 36842552 G A PPIL1 5'UTR 0.32 TCGA-T3-A92M-01 6 36922648 36922648 G A PI16 Missense_Mutation p.E38K 0.17 tolerated(0.11) benign(0.078) TCGA-T3-A92M-01 6 43474984 43474984 C G LRRC73 Missense_Mutation p.E315Q 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-T3-A92M-01 6 43474988 43474988 C T LRRC73 Silent p.E313E 0.12 TCGA-T3-A92M-01 6 43475308 43475308 C G LRRC73 Missense_Mutation p.E256Q 0.08 deleterious(0.02) possibly_damaging(0.782) TCGA-T3-A92M-01 6 66205295 66205295 G T EYS Missense_Mutation p.D3E 0.59 tolerated_low_confidence(0.81) benign(0.01) TCGA-T3-A92M-01 6 70952388 70952388 A T COL9A1 Missense_Mutation p.S635T 0.11 possibly_damaging(0.634) TCGA-T3-A92M-01 6 84270599 84270599 C T SNAP91 Missense_Mutation p.G837E 0.11 deleterious(0.04) probably_damaging(0.997) TCGA-T3-A92M-01 6 90572749 90572749 A G CASP8AP2 RNA 0.21 TCGA-T3-A92M-01 6 90572878 90572878 A T CASP8AP2 RNA 0.15 TCGA-T3-A92M-01 7 100173388 100173388 G C LRCH4 Silent p.L598L 0.12 TCGA-T3-A92M-01 7 100867009 100867009 C T ZNHIT1 Missense_Mutation p.S110L 0.11 tolerated(0.24) benign(0.001) TCGA-T3-A92M-01 7 101459297 101459297 C G CUX1 5'UTR 0.13 TCGA-T3-A92M-01 7 102953441 102953441 C T DNAJC2 Missense_Mutation p.E582K 0.16 tolerated(0.13) benign(0.16) TCGA-T3-A92M-01 7 105733542 105733542 C T SYPL1 Silent p.V166V 0.25 TCGA-T3-A92M-01 7 107430085 107430085 C G SLC26A3 Missense_Mutation p.E207Q 0.19 tolerated(0.24) benign(0.091) TCGA-T3-A92M-01 7 114298149 114298149 C G FOXP2 Missense_Mutation p.S457W 0.15 deleterious(0) unknown(0) TCGA-T3-A92M-01 7 120978954 120978954 C A WNT16 Nonsense_Mutation p.S218* 0.18 TCGA-T3-A92M-01 7 137154323 137154323 G A DGKI Missense_Mutation p.L824F 0.17 tolerated(0.15) probably_damaging(0.999) TCGA-T3-A92M-01 7 140301918 140301918 C T DENND2A Missense_Mutation p.E94K 0.17 tolerated(0.52) benign(0.094) TCGA-T3-A92M-01 7 141478996 141478996 C T TAS2R4 Silent p.L236L 0.15 TCGA-T3-A92M-01 7 142176539 142176539 G A TRBV7-4 Missense_Mutation p.S46L 0.17 deleterious(0.04) benign(0.165) TCGA-T3-A92M-01 7 143573255 143573255 G A FAM115A Silent p.L149L 0.40 TCGA-T3-A92M-01 7 148947825 148947825 G A ZNF212 Silent p.E156E 0.21 TCGA-T3-A92M-01 7 21956485 21956485 T G CDCA7L Missense_Mutation p.N18H 0.11 tolerated(0.07) probably_damaging(0.935) TCGA-T3-A92M-01 7 23157529 23157529 C T KLHL7 Intron 0.08 TCGA-T3-A92M-01 7 36895000 36895000 G A ELMO1 3'UTR 0.33 TCGA-T3-A92M-01 7 37889995 37889995 C G NME8 Missense_Mutation p.Q17E 0.15 tolerated(0.12) possibly_damaging(0.779) TCGA-T3-A92M-01 7 4304782 4304782 G C SDK1 Silent p.A2136A 0.11 TCGA-T3-A92M-01 7 53104198 53104198 C A POM121L12 Nonsense_Mutation p.C278* 0.12 TCGA-T3-A92M-01 7 63538695 63538695 C G ZNF727 Missense_Mutation p.P423R 0.40 deleterious(0.01) benign(0.167) TCGA-T3-A92M-01 7 64168348 64168348 G C ZNF107 Missense_Mutation p.E556Q 0.15 tolerated(0.09) benign(0.037) TCGA-T3-A92M-01 7 72178588 72178588 G A TYW1B Missense_Mutation p.A80V 0.10 tolerated(0.13) benign(0.004) TCGA-T3-A92M-01 7 897555 897555 G C SUN1 Silent p.V495V 0.09 TCGA-T3-A92M-01 7 95157581 95157581 G A ASB4 Missense_Mutation p.G315E 0.24 deleterious(0.01) probably_damaging(0.957) TCGA-T3-A92M-01 8 107782176 107782176 C T ABRA Silent p.S81S 0.15 TCGA-T3-A92M-01 8 124268174 124268174 G A ZHX1 Nonsense_Mutation p.R5* 0.10 TCGA-T3-A92M-01 8 124693544 124693544 G C ANXA13 Missense_Mutation p.S337C 0.09 tolerated(0.09) benign(0.012) TCGA-T3-A92M-01 8 124982286 124982286 C T FER1L6 Silent p.F132F 0.10 TCGA-T3-A92M-01 8 133790065 133790065 G A PHF20L1 5'UTR 0.13 TCGA-T3-A92M-01 8 133925338 133925338 G A TG Silent p.L1402L 0.17 TCGA-T3-A92M-01 8 144658813 144658813 C G NAPRT1 Intron 0.17 TCGA-T3-A92M-01 8 144810838 144810838 C G FAM83H Missense_Mutation p.E265Q 0.11 deleterious(0.04) probably_damaging(1) TCGA-T3-A92M-01 8 145659007 145659007 G C TONSL Missense_Mutation p.L1175V 0.12 tolerated(0.27) benign(0.27) TCGA-T3-A92M-01 8 17810491 17810491 C T PCM1 Missense_Mutation p.P362S 0.25 deleterious(0) possibly_damaging(0.901) TCGA-T3-A92M-01 8 20055047 20055047 C T ATP6V1B2 Missense_Mutation p.R44C 0.21 deleterious_low_confidence(0) benign(0.022) TCGA-T3-A92M-01 8 43155769 43155769 T C RNU6-104P 5'Flank 0.20 TCGA-T3-A92M-01 8 69104621 69104621 T C PREX2 Missense_Mutation p.F1489L 0.14 tolerated(0.15) probably_damaging(0.952) TCGA-T3-A92M-01 8 72754970 72754970 C T MSC Missense_Mutation p.V183M 0.13 tolerated(0.46) benign(0.017) TCGA-T3-A92M-01 8 82373744 82373744 G T FABP9 Missense_Mutation p.F5L 0.10 tolerated(0.22) benign(0.436) TCGA-T3-A92M-01 8 98078254 98078254 C A CPQ Nonsense_Mutation p.Y357* 0.11 TCGA-T3-A92M-01 9 111745538 111745538 C G CTNNAL1 Missense_Mutation p.D263H 0.18 tolerated(0.59) benign(0.002) TCGA-T3-A92M-01 9 131027891 131027891 G C GOLGA2 Silent p.V275V 0.17 TCGA-T3-A92M-01 9 88204527 88204527 C T AGTPBP1 Missense_Mutation p.E840K 0.10 tolerated(0.26) benign(0.021) TCGA-T3-A92M-01 9 95792158 95792158 C G FGD3 Silent p.L520L 0.07 TCGA-T3-A92M-01 9 97847804 97847804 C A C9orf3 Intron 0.26 TCGA-T3-A92M-01 9 97869405 97869405 G C FANCC Silent p.L492L 0.13 TCGA-T3-A92M-01 9 99799674 99799674 C T CTSV Missense_Mutation p.E86K 0.07 deleterious(0.03) possibly_damaging(0.857) TCGA-T3-A92M-01 X 111914334 111914334 C A LHFPL1 Silent p.L95L 0.15 TCGA-T3-A92M-01 X 123518199 123518199 C G TENM1 Missense_Mutation p.K2194N 0.05 tolerated(1) benign(0) TCGA-T3-A92M-01 X 129630186 129630186 G T RP1-274L7.1 Intron 0.32 TCGA-T3-A92M-01 X 50163416 50163416 C A DGKK RNA 0.23 TCGA-T3-A92M-01 X 53561522 53561522 C G HUWE1 Silent p.L4262L 0.29 TCGA-T3-A92M-01 X 70460923 70460923 T C ZMYM3 Missense_Mutation p.Y1319C 0.22 deleterious(0) probably_damaging(0.999) TCGA-T3-A92M-01 X 73963269 73963269 C G KIAA2022 Missense_Mutation p.E375Q 0.24 tolerated_low_confidence(0.14) benign(0.165) TCGA-T3-A92N-01 10 104572904 104572904 A G WBP1L Missense_Mutation p.D303G 0.49 deleterious(0) possibly_damaging(0.615) TCGA-T3-A92N-01 10 105763081 105763081 C T SLK Silent p.I715I 0.49 TCGA-T3-A92N-01 10 120817671 120817671 C T EIF3A Missense_Mutation p.E592K 0.46 deleterious(0.02) unknown(0) TCGA-T3-A92N-01 10 124897218 124897218 T G HMX3 Missense_Mutation p.S349A 0.36 tolerated(0.11) unknown(0) TCGA-T3-A92N-01 10 128795100 128795100 C T DOCK1 Missense_Mutation p.H188Y 0.50 deleterious(0) benign(0.152) TCGA-T3-A92N-01 10 29599113 29599113 T A LYZL1 Missense_Mutation p.Y171N 0.22 deleterious(0.04) benign(0.032) TCGA-T3-A92N-01 10 38407123 38407123 G A ZNF37A Silent p.T348T 0.22 TCGA-T3-A92N-01 10 51970603 51970603 C G ASAH2 Missense_Mutation p.G465A 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-T3-A92N-01 10 61829895 61829895 T C ANK3 Missense_Mutation p.T3582A 0.50 probably_damaging(0.935) TCGA-T3-A92N-01 10 69672542 69672542 G A SIRT1 Missense_Mutation p.D557N 0.62 tolerated(0.45) benign(0.003) TCGA-T3-A92N-01 10 83635667 83635667 G T NRG3 Missense_Mutation p.A191S 0.18 tolerated(0.67) benign(0.009) TCGA-T3-A92N-01 10 86132166 86132166 C T CCSER2 Missense_Mutation p.P453L 0.23 tolerated(0.92) benign(0.002) TCGA-T3-A92N-01 10 91512372 91512372 A G KIF20B Missense_Mutation p.N1384S 0.24 tolerated(0.23) benign(0.012) TCGA-T3-A92N-01 10 95459821 95459821 C T FRA10AC1 Missense_Mutation p.E15K 0.41 deleterious(0.03) benign(0.434) TCGA-T3-A92N-01 11 1094756 1094756 G A MUC2 Silent p.T1948T 0.72 TCGA-T3-A92N-01 11 113683157 113683157 T A USP28 Missense_Mutation p.I605F 0.60 deleterious(0) probably_damaging(0.93) TCGA-T3-A92N-01 11 11926970 11926970 C T USP47 Nonsense_Mutation p.Q214* 0.49 TCGA-T3-A92N-01 11 124294592 124294592 A T OR8B4 Missense_Mutation p.M59K 0.77 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-T3-A92N-01 11 20636288 20636288 C A SLC6A5 Missense_Mutation p.A350D 0.69 tolerated(0.11) benign(0.06) TCGA-T3-A92N-01 11 61495637 61495637 G A DAGLA Missense_Mutation p.E217K 0.34 deleterious(0.04) probably_damaging(0.98) TCGA-T3-A92N-01 11 72421485 72421485 T C ARAP1 Missense_Mutation p.N454S 0.71 tolerated(1) benign(0.001) TCGA-T3-A92N-01 11 9452476 9452476 G C IPO7 Missense_Mutation p.D603H 0.71 deleterious(0) probably_damaging(0.928) TCGA-T3-A92N-01 12 113384607 113384607 G A OAS3 Silent p.L232L 0.29 TCGA-T3-A92N-01 12 132511992 132511992 G C EP400 Silent p.P1675P 0.36 TCGA-T3-A92N-01 12 21457366 21457366 T C SLCO1A2 Missense_Mutation p.Y195C 0.46 deleterious(0) probably_damaging(0.998) TCGA-T3-A92N-01 12 22680748 22680748 T G C2CD5 Missense_Mutation p.I86L 0.51 deleterious(0) probably_damaging(0.991) TCGA-T3-A92N-01 12 26568407 26568407 C A ITPR2 Nonsense_Mutation p.E2379* 0.05 TCGA-T3-A92N-01 12 416981 416981 G - KDM5A Frame_Shift_Del p.P1190Lfs*19 0.15 TCGA-T3-A92N-01 12 49442492 49442492 G A KMT2D Nonsense_Mutation p.Q1361* 0.42 TCGA-T3-A92N-01 12 51382111 51382111 T C SLC11A2 Silent p.K590K 0.38 TCGA-T3-A92N-01 12 56221719 56221719 C T DNAJC14 Missense_Mutation p.E242K 0.34 tolerated(0.19) benign(0.043) TCGA-T3-A92N-01 12 6438752 6438752 T - TNFRSF1A Frame_Shift_Del p.N365Tfs*14 0.38 TCGA-T3-A92N-01 12 6884441 6884441 C A LAG3 Missense_Mutation p.L262M 0.19 deleterious(0.04) probably_damaging(0.976) TCGA-T3-A92N-01 12 69263255 69263255 G A CPM Nonsense_Mutation p.R213* 0.38 TCGA-T3-A92N-01 12 96429180 96429180 C T LTA4H Missense_Mutation p.A40T 0.50 tolerated(0.59) benign(0) TCGA-T3-A92N-01 13 25404708 25404708 A C RNF17 Missense_Mutation p.K778Q 0.35 deleterious(0) probably_damaging(0.987) TCGA-T3-A92N-01 13 32945187 32945187 G C BRCA2 Missense_Mutation p.R2861T 0.25 deleterious(0) benign(0.275) TCGA-T3-A92N-01 13 41766205 41766205 T A KBTBD7 3'UTR 0.55 TCGA-T3-A92N-01 13 41767894 41767894 C T KBTBD7 Missense_Mutation p.R167H 0.26 tolerated(0.12) probably_damaging(0.992) TCGA-T3-A92N-01 13 61987898 61987898 C T PCDH20 Missense_Mutation p.E112K 0.14 tolerated(0.47) benign(0.005) TCGA-T3-A92N-01 13 96705555 96705555 C T UGGT2 Silent p.A4A 0.30 TCGA-T3-A92N-01 14 21487277 21487277 G A NDRG2 Silent p.L253L 0.31 TCGA-T3-A92N-01 14 24701551 24701551 T C NEDD8 5'UTR 0.37 TCGA-T3-A92N-01 14 35331380 35331381 - A BAZ1A Frame_Shift_Ins p.P88Sfs*16 0.46 TCGA-T3-A92N-01 14 36192260 36192260 G A RALGAPA1 Nonsense_Mutation p.Q693* 0.82 TCGA-T3-A92N-01 14 50088589 50088589 G A MGAT2 Silent p.P201P 0.63 TCGA-T3-A92N-01 14 50092638 50092639 - A DNAAF2 Frame_Shift_Ins p.A713Sfs*3 0.13 TCGA-T3-A92N-01 14 51238126 51238126 T A NIN Missense_Mutation p.N348Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-T3-A92N-01 14 61115425 61115425 G A SIX1 Silent p.T161T 0.46 TCGA-T3-A92N-01 14 72190550 72190550 A G SIPA1L1 Silent p.G1486G 0.50 TCGA-T3-A92N-01 14 75230901 75230901 C T YLPM1 Nonsense_Mutation p.Q237* 0.22 TCGA-T3-A92N-01 14 93263973 93263973 C T GOLGA5 Missense_Mutation p.S64L 0.53 deleterious(0.01) benign(0.021) TCGA-T3-A92N-01 15 25430620 25430620 G A SNORD115-10 5'Flank 0.45 TCGA-T3-A92N-01 15 41793700 41793700 C T ITPKA Missense_Mutation p.P177S 0.21 tolerated(0.06) probably_damaging(1) TCGA-T3-A92N-01 15 52498061 52498061 A C MYO5C Missense_Mutation p.Y1497D 0.28 deleterious(0) probably_damaging(0.999) TCGA-T3-A92N-01 15 59350698 59350698 G A RNF111 Missense_Mutation p.E439K 0.40 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-T3-A92N-01 15 74327717 74327717 C T PML Intron 0.46 TCGA-T3-A92N-01 15 74328064 74328064 C T PML Intron 0.39 TCGA-T3-A92N-01 15 74328212 74328212 C G PML Intron 0.28 TCGA-T3-A92N-01 15 74887992 74887992 G A ARID3B Silent p.T520T 0.12 TCGA-T3-A92N-01 16 1250562 1250562 C T CACNA1H Silent p.A370A 0.18 TCGA-T3-A92N-01 16 16208861 16208861 C T ABCC1 Silent p.I1106I 0.24 TCGA-T3-A92N-01 16 16208862 16208862 G T ABCC1 Missense_Mutation p.V1107F 0.26 deleterious(0) possibly_damaging(0.519) TCGA-T3-A92N-01 16 20554565 20554565 G A ACSM2B Missense_Mutation p.A434V 0.44 deleterious(0.02) benign(0.057) TCGA-T3-A92N-01 16 30721046 30721046 G C SRCAP Silent p.L282L 0.41 TCGA-T3-A92N-01 16 354309 354309 G A AXIN1 Missense_Mutation p.R417C 0.44 deleterious(0) probably_damaging(0.932) TCGA-T3-A92N-01 16 47733303 47733303 G A PHKB 3'UTR 0.35 TCGA-T3-A92N-01 16 47733304 47733304 A T PHKB 3'UTR 0.34 TCGA-T3-A92N-01 16 53338091 53338091 C G CHD9 Missense_Mutation p.S2058C 0.38 possibly_damaging(0.906) TCGA-T3-A92N-01 16 57690482 57690482 C T GPR56 Nonsense_Mutation p.Q374* 0.34 TCGA-T3-A92N-01 16 67877456 67877456 G A THAP11 3'UTR 0.54 TCGA-T3-A92N-01 16 69874115 69874115 G C WWP2 Missense_Mutation p.G143R 0.22 deleterious(0.01) probably_damaging(0.929) TCGA-T3-A92N-01 16 74526880 74526880 C T GLG1 Missense_Mutation p.M403I 0.28 tolerated(0.06) benign(0.01) TCGA-T3-A92N-01 16 8890157 8890157 G T TMEM186 Silent p.L98L 0.35 TCGA-T3-A92N-01 16 89986228 89986228 G A MC1R Missense_Mutation p.V188I 0.20 tolerated(0.08) benign(0.44) TCGA-T3-A92N-01 17 10424532 10424532 G A MYH2 3'UTR 0.71 TCGA-T3-A92N-01 17 32906293 32906293 C G C17orf102 Missense_Mutation p.D3H 0.42 tolerated_low_confidence(0.46) probably_damaging(0.934) TCGA-T3-A92N-01 17 45742519 45742519 A C KPNB1 Missense_Mutation p.K332Q 0.22 tolerated(0.11) benign(0.007) TCGA-T3-A92N-01 17 57761261 57761261 C T CLTC Missense_Mutation p.P1450L 0.42 deleterious(0.01) probably_damaging(1) TCGA-T3-A92N-01 17 66526546 66526546 C T PRKAR1A Nonsense_Mutation p.R368* 0.19 TCGA-T3-A92N-01 17 76455961 76455961 C T DNAH17 Silent p.A3172A 0.58 TCGA-T3-A92N-01 17 7701546 7701546 C T DNAH2 Missense_Mutation p.R2768C 0.58 probably_damaging(1) TCGA-T3-A92N-01 17 78155327 78155327 C T CARD14 Silent p.I30I 0.45 TCGA-T3-A92N-01 17 80019564 80019564 C T DUS1L Silent p.G209G 0.19 TCGA-T3-A92N-01 17 8216345 8216345 G A ARHGEF15 Missense_Mutation p.R236K 0.71 tolerated(0.2) benign(0.001) TCGA-T3-A92N-01 18 14534964 14534964 G C POTEC Missense_Mutation p.Q285E 0.11 tolerated(0.48) possibly_damaging(0.848) TCGA-T3-A92N-01 19 12978453 12978453 G A MAST1 Missense_Mutation p.G769S 0.50 tolerated_low_confidence(0.21) benign(0.043) TCGA-T3-A92N-01 19 13210418 13210418 C G LYL1 Silent p.L186L 0.27 TCGA-T3-A92N-01 19 13941053 13941053 C T ZSWIM4 Missense_Mutation p.T720I 0.28 deleterious(0) unknown(0) TCGA-T3-A92N-01 19 14270318 14270318 C G LPHN1 Missense_Mutation p.V645L 0.22 tolerated(1) benign(0.145) TCGA-T3-A92N-01 19 14581060 14581060 G A PKN1 Silent p.T799T 0.33 TCGA-T3-A92N-01 19 15288454 15288454 C G NOTCH3 Missense_Mutation p.E1429Q 0.30 tolerated(0.87) benign(0.023) TCGA-T3-A92N-01 19 17449927 17449927 C G GTPBP3 Silent p.P252P 0.33 TCGA-T3-A92N-01 19 21366030 21366030 A T ZNF431 Silent p.I308I 0.29 TCGA-T3-A92N-01 19 21992396 21992396 A G ZNF43 Missense_Mutation p.F148S 0.41 deleterious(0.02) benign(0.017) TCGA-T3-A92N-01 19 23541863 23541863 A C ZNF91 3'UTR 0.27 TCGA-T3-A92N-01 19 35449416 35449416 C T ZNF792 Missense_Mutation p.R448Q 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-T3-A92N-01 19 41889762 41889762 C A TMEM91 Missense_Mutation p.S168Y 0.26 deleterious(0.01) benign(0.231) TCGA-T3-A92N-01 19 42471431 42471431 G A ATP1A3 Missense_Mutation p.R1008C 0.19 deleterious(0) probably_damaging(1) TCGA-T3-A92N-01 19 44118399 44118399 C A SRRM5 Nonsense_Mutation p.S709* 0.35 TCGA-T3-A92N-01 19 49639162 49639162 C T PPFIA3 Silent p.V549V 0.29 TCGA-T3-A92N-01 19 54387494 54387494 G A PRKCG Silent p.T94T 0.25 TCGA-T3-A92N-01 19 7927297 7927297 G A EVI5L Silent p.L608L 0.35 TCGA-T3-A92N-01 19 8987333 8987333 G A MUC16 Silent p.T13918T 0.26 TCGA-T3-A92N-01 1 103405944 103405944 C A COL11A1 Missense_Mutation p.G1108V 0.44 unknown(0) TCGA-T3-A92N-01 1 151773897 151773897 G A LINGO4 Silent p.G428G 0.18 TCGA-T3-A92N-01 1 152128196 152128196 C T RPTN Missense_Mutation p.S460N 0.29 tolerated(0.3) benign(0.02) TCGA-T3-A92N-01 1 152883971 152883971 G A IVL Silent p.L566L 0.10 TCGA-T3-A92N-01 1 157805814 157805814 G A CD5L Missense_Mutation p.R63W 0.55 deleterious(0.03) benign(0.284) TCGA-T3-A92N-01 1 158577123 158577123 A G OR10Z1 Missense_Mutation p.T299A 0.16 tolerated(0.59) benign(0) TCGA-T3-A92N-01 1 158604380 158604380 C T SPTA1 Missense_Mutation p.A1840T 0.49 tolerated(0.64) benign(0.2) TCGA-T3-A92N-01 1 16890647 16890647 C T NBPF1 Missense_Mutation p.E1071K 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.717) TCGA-T3-A92N-01 1 16935024 16935024 G A NBPF1 5'UTR 0.06 TCGA-T3-A92N-01 1 169581536 169581536 C T SELP Missense_Mutation p.E294K 0.56 tolerated(0.16) benign(0.109) TCGA-T3-A92N-01 1 231377141 231377141 C T GNPAT Missense_Mutation p.S6L 0.55 tolerated_low_confidence(0.21) unknown(0) TCGA-T3-A92N-01 1 248201645 248201645 G A OR2L2 Missense_Mutation p.V26I 0.14 deleterious(0.04) benign(0) TCGA-T3-A92N-01 1 249142661 249142661 G T ZNF672 Missense_Mutation p.E396D 0.41 tolerated(0.08) benign(0.197) TCGA-T3-A92N-01 1 38003454 38003454 G A SNIP1 Silent p.F362F 0.27 TCGA-T3-A92N-01 1 46472023 46472023 A T MAST2 Missense_Mutation p.E286D 0.29 tolerated_low_confidence(0.64) benign(0.233) TCGA-T3-A92N-01 1 5933374 5933374 C T NPHP4 Missense_Mutation p.E1085K 0.29 tolerated(0.57) benign(0.02) TCGA-T3-A92N-01 1 6688643 6688643 C T THAP3 Silent p.V53V 0.26 TCGA-T3-A92N-01 1 94342497 94342497 G A DNTTIP2 Nonsense_Mutation p.Q332* 0.24 TCGA-T3-A92N-01 20 168551 168551 G T DEFB128 Silent p.P86P 0.26 TCGA-T3-A92N-01 20 39752005 39752005 C T TOP1 3'UTR 0.25 TCGA-T3-A92N-01 20 47707502 47707502 A G CSE1L Missense_Mutation p.I770V 0.49 tolerated(0.51) benign(0.371) TCGA-T3-A92N-01 20 4880344 4880344 G A SLC23A2 Silent p.C113C 0.30 TCGA-T3-A92N-01 20 51871909 51871909 G A TSHZ2 Missense_Mutation p.E638K 0.25 tolerated(0.11) benign(0.338) TCGA-T3-A92N-01 20 8745848 8745848 A T PLCB1 Nonsense_Mutation p.K925* 0.18 TCGA-T3-A92N-01 21 45821664 45821664 G A TRPM2 Missense_Mutation p.A808T 0.72 tolerated(0.21) benign(0.01) TCGA-T3-A92N-01 22 16279195 16279195 C A POTEH Missense_Mutation p.R343I 0.16 deleterious(0) probably_damaging(0.999) TCGA-T3-A92N-01 22 18979485 18979485 A G DGCR5 RNA 0.37 TCGA-T3-A92N-01 22 25771949 25771949 G A LRP5L 5'UTR 0.52 TCGA-T3-A92N-01 22 46859976 46859976 G A CELSR1 Missense_Mutation p.R1271C 0.24 deleterious(0.01) possibly_damaging(0.899) TCGA-T3-A92N-01 2 100912016 100912016 C T LONRF2 Splice_Site p.X493_splice 0.47 TCGA-T3-A92N-01 2 128075777 128075777 G A MAP3K2 Nonsense_Mutation p.Q388* 0.19 TCGA-T3-A92N-01 2 135596302 135596303 - A ACMSD Frame_Shift_Ins p.R20Efs*42 0.22 TCGA-T3-A92N-01 2 136581548 136581548 A G LCT Missense_Mutation p.F277S 0.69 deleterious(0) benign(0.282) TCGA-T3-A92N-01 2 172187192 172187192 C T METTL8 Missense_Mutation p.R246K 0.54 deleterious(0.01) benign(0.088) TCGA-T3-A92N-01 2 177033996 177033996 C T HOXD3 Missense_Mutation p.P52S 0.25 tolerated(0.07) probably_damaging(0.968) TCGA-T3-A92N-01 2 178098800 178098800 T A NFE2L2 Missense_Mutation p.E82V 0.67 deleterious(0) probably_damaging(1) TCGA-T3-A92N-01 2 208986513 208986513 A G CRYGD Missense_Mutation p.S137P 0.34 tolerated(1) benign(0) TCGA-T3-A92N-01 2 223504411 223504411 C A FARSB Missense_Mutation p.A115S 0.64 tolerated(0.52) benign(0.003) TCGA-T3-A92N-01 2 228881810 228881810 G T SPHKAP Missense_Mutation p.P1254T 0.63 deleterious(0) probably_damaging(1) TCGA-T3-A92N-01 2 44428690 44428690 C T PPM1B Missense_Mutation p.R118C 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-T3-A92N-01 2 73492558 73492558 G T FBXO41 Silent p.R472R 0.50 TCGA-T3-A92N-01 2 74708183 74708183 G T CCDC142 Missense_Mutation p.T423N 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-T3-A92N-01 2 97217910 97217910 G A ARID5A Missense_Mutation p.A549T 0.25 tolerated(1) benign(0.006) TCGA-T3-A92N-01 3 101070484 101070484 T - SENP7 Frame_Shift_Del p.K545Nfs*11 0.18 TCGA-T3-A92N-01 3 121980461 121980461 G A CASR Silent p.Q193Q 0.23 TCGA-T3-A92N-01 3 15720996 15720996 A C ANKRD28 Missense_Mutation p.L792V 0.54 tolerated(0.05) probably_damaging(0.928) TCGA-T3-A92N-01 3 184043061 184043061 G A EIF4G1 Missense_Mutation p.R961Q 0.16 deleterious(0.01) possibly_damaging(0.863) TCGA-T3-A92N-01 3 187089114 187089114 A G RTP4 Missense_Mutation p.I232V 0.38 tolerated_low_confidence(0.69) benign(0) TCGA-T3-A92N-01 3 195515500 195515500 G A MUC4 Missense_Mutation p.S984L 0.09 unknown(0) TCGA-T3-A92N-01 3 196751281 196751282 - CGCCT MFI2 Frame_Shift_Ins p.V127Efs*3 0.35 TCGA-T3-A92N-01 3 57493504 57493504 C T DNAH12 Missense_Mutation p.A255T 0.29 tolerated(0.63) benign(0.009) TCGA-T3-A92N-01 4 110221803 110221803 G T COL25A1 Silent p.S101S 0.38 TCGA-T3-A92N-01 4 128814571 128814571 G A PLK4 Missense_Mutation p.E774K 0.70 tolerated(0.07) probably_damaging(0.998) TCGA-T3-A92N-01 4 80828461 80828461 G A ANTXR2 3'UTR 0.82 TCGA-T3-A92N-01 4 95200113 95200113 A C SMARCAD1 Missense_Mutation p.Q779P 0.45 deleterious(0) possibly_damaging(0.905) TCGA-T3-A92N-01 5 134153352 134153352 A G DDX46 Missense_Mutation p.N926S 0.18 tolerated(0.63) benign(0.002) TCGA-T3-A92N-01 5 140255239 140255239 C T PCDHA12 Missense_Mutation p.P61L 0.44 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-T3-A92N-01 5 140682872 140682872 G C SLC25A2 Missense_Mutation p.F187L 0.27 deleterious(0) probably_damaging(0.936) TCGA-T3-A92N-01 5 140731304 140731304 G A PCDHGB1 Missense_Mutation p.E493K 0.46 deleterious(0.02) benign(0.072) TCGA-T3-A92N-01 5 148406460 148406460 C A SH3TC2 Missense_Mutation p.M945I 0.08 tolerated(0.12) benign(0.017) TCGA-T3-A92N-01 5 149200006 149200006 C A PPARGC1B Missense_Mutation p.S30Y 0.23 tolerated(0.09) probably_damaging(0.976) TCGA-T3-A92N-01 5 150436497 150436497 C T TNIP1 Missense_Mutation p.E153K 0.43 deleterious(0.03) benign(0.032) TCGA-T3-A92N-01 5 156590520 156590520 C A FAM71B Silent p.T252T 0.53 TCGA-T3-A92N-01 5 32712325 32712325 C T NPR3 Missense_Mutation p.S148L 0.27 tolerated(0.08) possibly_damaging(0.899) TCGA-T3-A92N-01 5 32712623 32712623 C T NPR3 Silent p.I247I 0.45 TCGA-T3-A92N-01 5 86633825 86633825 G T RASA1 Nonsense_Mutation p.E312* 0.31 TCGA-T3-A92N-01 6 131481297 131481297 C G AKAP7 Missense_Mutation p.Q84E 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-T3-A92N-01 6 132270505 132270505 T A CTGF Missense_Mutation p.M317L 0.36 deleterious(0.03) benign(0.085) TCGA-T3-A92N-01 6 148854978 148854978 C T SASH1 Silent p.V602V 0.29 TCGA-T3-A92N-01 6 25727462 25727462 C T HIST1H2BA Missense_Mutation p.A109V 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.779) TCGA-T3-A92N-01 6 27834714 27834714 C T HIST1H1B Silent p.P198P 0.35 TCGA-T3-A92N-01 6 28120136 28120136 A T ZKSCAN8 Missense_Mutation p.E250V 0.33 deleterious(0) probably_damaging(0.999) TCGA-T3-A92N-01 6 30653531 30653531 G A PPP1R18 Nonsense_Mutation p.R89* 0.47 TCGA-T3-A92N-01 6 43269995 43269995 G A SLC22A7 Silent p.L373L 0.26 TCGA-T3-A92N-01 7 104752302 104752302 C G KMT2E Missense_Mutation p.Q1367E 0.32 deleterious_low_confidence(0.01) benign(0.027) TCGA-T3-A92N-01 7 108213675 108213675 T A DNAJB9 Missense_Mutation p.S184T 0.45 tolerated(0.82) benign(0) TCGA-T3-A92N-01 7 124469392 124469392 T C POT1 Missense_Mutation p.K504E 0.32 deleterious(0) benign(0.08) TCGA-T3-A92N-01 7 128041099 128041099 C G IMPDH1 Silent p.V158V 0.33 TCGA-T3-A92N-01 7 14026302 14026302 G A ETV1 Nonsense_Mutation p.Q48* 0.15 TCGA-T3-A92N-01 7 149514780 149514780 C T SSPO RNA 0.58 TCGA-T3-A92N-01 7 150027948 150027948 A G ZBED6CL Missense_Mutation p.Q152R 0.48 tolerated(0.59) benign(0.006) TCGA-T3-A92N-01 7 15405151 15405151 T A AGMO Silent p.S417S 0.29 TCGA-T3-A92N-01 7 26224633 26224633 C G NFE2L3 Missense_Mutation p.H439D 0.40 tolerated(0.08) benign(0.019) TCGA-T3-A92N-01 7 35707179 35707179 G C HERPUD2 Nonsense_Mutation p.S120* 0.05 TCGA-T3-A92N-01 7 4838879 4838879 T C RADIL 3'UTR 0.47 TCGA-T3-A92N-01 7 72858434 72858434 G T BAZ1B Silent p.G1290G 0.49 TCGA-T3-A92N-01 7 91752493 91752494 - T CYP51A1 Frame_Shift_Ins p.C343Mfs*19 0.30 TCGA-T3-A92N-01 8 144993486 144993486 G A PLEC Silent p.V3638V 0.15 TCGA-T3-A92N-01 8 24167472 24167473 - A ADAM28 Frame_Shift_Ins p.N75Kfs*15 0.43 TCGA-T3-A92N-01 8 71068871 71068871 T A NCOA2 Missense_Mutation p.M577L 0.17 tolerated(0.9) benign(0.006) TCGA-T3-A92N-01 8 79645784 79645784 C T IL7 3'UTR 0.18 TCGA-T3-A92N-01 8 79645787 79645787 C T IL7 3'UTR 0.17 TCGA-T3-A92N-01 8 79645810 79645810 C G IL7 3'UTR 0.14 TCGA-T3-A92N-01 8 79646064 79646064 C G IL7 Missense_Mutation p.E140Q 0.14 deleterious(0.04) benign(0.067) TCGA-T3-A92N-01 8 80992685 80992685 C T TPD52 Missense_Mutation p.D2N 0.19 tolerated_low_confidence(0.13) benign(0.016) TCGA-T3-A92N-01 8 85774568 85774568 C T RALYL Missense_Mutation p.R164C 0.69 deleterious(0) possibly_damaging(0.474) TCGA-T3-A92N-01 8 92972595 92972595 G T RUNX1T1 Missense_Mutation p.P575T 0.52 tolerated(0.13) benign(0.035) TCGA-T3-A92N-01 9 112705856 112705856 C - PALM2 3'Flank 0.35 TCGA-T3-A92N-01 9 125281665 125281665 A G OR1J4 Silent p.L82L 0.30 TCGA-T3-A92N-01 9 125865658 125865658 C A RABGAP1 3'UTR 0.65 TCGA-T3-A92N-01 9 128099532 128099532 T A GAPVD1 Missense_Mutation p.Y874N 0.55 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-T3-A92N-01 9 135251303 135251303 C T TTF1 Silent p.%3D 0.31 TCGA-T3-A92N-01 9 135251515 135251515 C T TTF1 Silent p.L835L 0.35 TCGA-T3-A92N-01 9 88636841 88636841 C T NAA35 Missense_Mutation p.A715V 0.29 tolerated(0.78) benign(0.001) TCGA-T3-A92N-01 9 98220567 98220567 C T PTCH1 Missense_Mutation p.A966T 0.43 deleterious(0) possibly_damaging(0.893) TCGA-T3-A92N-01 X 129063563 129063563 G A UTP14A Silent p.L765L 0.80 TCGA-T3-A92N-01 X 149638187 149638187 A - MAMLD1 Frame_Shift_Del p.I90* 0.46 TCGA-T3-A92N-01 X 149867750 149867750 G A MTMR1 Missense_Mutation p.E77K 0.56 tolerated(0.08) benign(0.211) TCGA-T3-A92N-01 X 26212812 26212812 G A MAGEB6 Silent p.P283P 0.75 TCGA-T3-A92N-01 X 34148560 34148560 G A FAM47A Silent p.F612F 0.66 TCGA-T3-A92N-01 X 48651673 48651673 A C GATA1 Missense_Mutation p.N280T 0.70 deleterious(0) probably_damaging(0.967) TCGA-TN-A7HI-01 10 129172386 129172386 G A DOCK1 Missense_Mutation p.V1174I 0.33 tolerated(0.06) benign(0.433) TCGA-TN-A7HI-01 10 50272780 50272780 C T VSTM4 Silent p.V212V 0.22 TCGA-TN-A7HI-01 10 51892684 51892684 G A FAM21A Silent p.L1335L 0.30 TCGA-TN-A7HI-01 10 55617002 55617002 C G PCDH15 Missense_Mutation p.D1247H 0.28 deleterious(0.03) probably_damaging(0.99) TCGA-TN-A7HI-01 10 61122243 61122243 C G FAM13C 5'UTR 0.17 TCGA-TN-A7HI-01 10 7214537 7214537 G A SFMBT2 Missense_Mutation p.R691W 0.27 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HI-01 10 79552093 79552093 G A DLG5 3'UTR 0.09 TCGA-TN-A7HI-01 10 81680769 81680769 G A MBL1P RNA 0.14 TCGA-TN-A7HI-01 11 102738680 102738680 C T MMP12 RNA 0.18 TCGA-TN-A7HI-01 11 5776794 5776794 G T OR52N4 Missense_Mutation p.C275F 0.24 tolerated(0.52) possibly_damaging(0.616) TCGA-TN-A7HI-01 11 64978326 64978326 A G CAPN1 Missense_Mutation p.T701A 0.31 tolerated(0.11) benign(0.028) TCGA-TN-A7HI-01 12 122079615 122079615 C G ORAI1 3'UTR 0.30 TCGA-TN-A7HI-01 12 124856569 124856569 G A NCOR2 Missense_Mutation p.R936W 0.28 probably_damaging(0.994) TCGA-TN-A7HI-01 12 49948282 49948282 G A KCNH3 Missense_Mutation p.R694H 0.31 tolerated(0.14) benign(0) TCGA-TN-A7HI-01 12 56221331 56221331 G C DNAJC14 Missense_Mutation p.S371C 0.23 deleterious(0.02) possibly_damaging(0.471) TCGA-TN-A7HI-01 12 56221340 56221340 C A DNAJC14 Missense_Mutation p.W368L 0.22 tolerated(0.36) benign(0.003) TCGA-TN-A7HI-01 12 75874612 75874615 TGCG - GLIPR1 5'UTR 0.55 TCGA-TN-A7HI-01 12 80651657 80651657 A T OTOGL Silent p.T579T 0.23 TCGA-TN-A7HI-01 14 68249661 68249661 C T ZFYVE26 Missense_Mutation p.G1403D 0.31 deleterious(0) probably_damaging(0.993) TCGA-TN-A7HI-01 15 42292157 42292157 G A PLA2G4E Silent p.P298P 0.35 TCGA-TN-A7HI-01 16 1265068 1265070 TTC - CACNA1H In_Frame_Del p.F1677del 0.38 TCGA-TN-A7HI-01 16 86544260 86544260 G A FOXF1 Missense_Mutation p.A29T 0.46 tolerated(0.23) benign(0.002) TCGA-TN-A7HI-01 17 35872745 35872745 C T DUSP14 Missense_Mutation p.A124V 0.44 tolerated(0.06) probably_damaging(0.93) TCGA-TN-A7HI-01 17 59482066 59482066 C T TBX2 Silent p.P329P 0.50 TCGA-TN-A7HI-01 17 62019186 62019186 C T SCN4A Missense_Mutation p.G1486S 0.25 deleterious(0) probably_damaging(0.985) TCGA-TN-A7HI-01 17 67132233 67132233 C A ABCA6 Missense_Mutation p.A154S 0.28 tolerated(0.13) possibly_damaging(0.61) TCGA-TN-A7HI-01 17 78341825 78341825 G A RNF213 Missense_Mutation p.D4013N 0.30 probably_damaging(0.976) TCGA-TN-A7HI-01 18 21333768 21333768 T C LAMA3 Silent p.P313P 0.07 TCGA-TN-A7HI-01 19 12511961 12511961 C T ZNF799 5'UTR 0.34 TCGA-TN-A7HI-01 19 12540832 12540832 G A ZNF443 3'UTR 0.25 TCGA-TN-A7HI-01 19 12907963 12907963 T C PRDX2 Missense_Mutation p.K177E 0.28 deleterious(0.03) benign(0.017) TCGA-TN-A7HI-01 19 18109024 18109024 C A KCNN1 Missense_Mutation p.R481S 0.25 deleterious(0) possibly_damaging(0.809) TCGA-TN-A7HI-01 19 38160892 38160892 C T ZNF781 Missense_Mutation p.R53Q 0.28 tolerated(0.08) possibly_damaging(0.86) TCGA-TN-A7HI-01 19 38573489 38573489 G A SIPA1L3 Silent p.P428P 0.05 TCGA-TN-A7HI-01 19 56424579 56424579 C T NLRP13 Missense_Mutation p.V202I 0.04 tolerated(1) benign(0.001) TCGA-TN-A7HI-01 1 101361769 101361769 G A SLC30A7 5'UTR 0.30 TCGA-TN-A7HI-01 1 156499965 156499965 G A IQGAP3 Nonsense_Mutation p.R1446* 0.58 TCGA-TN-A7HI-01 1 19923551 19923551 G T MINOS1 Silent p.S4S 0.38 TCGA-TN-A7HI-01 1 202097353 202097353 C T GPR37L1 Missense_Mutation p.T372I 0.31 tolerated(0.76) benign(0.13) TCGA-TN-A7HI-01 1 31346159 31346159 G A SDC3 Missense_Mutation p.R410C 0.39 deleterious(0) unknown(0) TCGA-TN-A7HI-01 1 35320840 35320840 C T SMIM12 3'UTR 0.36 TCGA-TN-A7HI-01 1 36372605 36372605 C T AGO1 Silent p.F489F 0.37 TCGA-TN-A7HI-01 1 53600102 53600102 C T SLC1A7 Splice_Site p.X46_splice 0.23 TCGA-TN-A7HI-01 1 70505431 70505431 G A LRRC7 Nonsense_Mutation p.W1270* 0.32 TCGA-TN-A7HI-01 20 33732846 33732846 C A EDEM2 Intron 0.13 TCGA-TN-A7HI-01 20 35635822 35635822 C T RBL1 Missense_Mutation p.D955N 0.18 tolerated(0.18) possibly_damaging(0.513) TCGA-TN-A7HI-01 20 36775191 36775191 G A TGM2 Missense_Mutation p.R263C 0.13 deleterious(0) benign(0.249) TCGA-TN-A7HI-01 20 4229106 4229106 C T ADRA1D Missense_Mutation p.A167T 0.16 tolerated(0.29) benign(0.009) TCGA-TN-A7HI-01 20 47251276 47251276 G A PREX1 Missense_Mutation p.T1402M 0.38 deleterious(0.02) benign(0.085) TCGA-TN-A7HI-01 2 33774800 33774800 C T RASGRP3 Silent p.C508C 0.24 TCGA-TN-A7HI-01 3 107799072 107799072 C T CD47 Missense_Mutation p.V56I 0.22 tolerated(0.07) probably_damaging(0.98) TCGA-TN-A7HI-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.32 deleterious(0.04) probably_damaging(0.96) TCGA-TN-A7HI-01 3 37034286 37034286 C T EPM2AIP1 Missense_Mutation p.E95K 0.35 deleterious(0.01) possibly_damaging(0.475) TCGA-TN-A7HI-01 3 81539529 81539529 G A GBE1 3'UTR 0.34 TCGA-TN-A7HI-01 4 125592402 125592402 C T ANKRD50 Missense_Mutation p.G677D 0.37 deleterious(0.05) probably_damaging(0.942) TCGA-TN-A7HI-01 4 140291481 140291481 C T NAA15 Nonsense_Mutation p.Q624* 0.38 TCGA-TN-A7HI-01 5 135229825 135229825 G C IL9 Missense_Mutation p.P67A 0.06 tolerated(0.4) probably_damaging(0.945) TCGA-TN-A7HI-01 5 147019229 147019229 G A JAKMIP2 Missense_Mutation p.T499M 0.37 deleterious(0) possibly_damaging(0.799) TCGA-TN-A7HI-01 5 178413498 178413498 G T GRM6 Missense_Mutation p.A586E 0.48 deleterious(0) probably_damaging(0.951) TCGA-TN-A7HI-01 5 41019010 41019010 G A MROH2B Missense_Mutation p.T851I 0.55 deleterious(0.01) benign(0.157) TCGA-TN-A7HI-01 5 7706894 7706894 C T ADCY2 Missense_Mutation p.R383C 0.20 deleterious(0) probably_damaging(1) TCGA-TN-A7HI-01 6 90455081 90455081 G A MDN1 Silent p.I1363I 0.33 TCGA-TN-A7HI-01 7 142605775 142605775 G A TRPV5 Nonsense_Mutation p.R699* 0.33 TCGA-TN-A7HI-01 7 6204942 6204942 C T CYTH3 Silent p.P363P 0.49 TCGA-TN-A7HI-01 8 22449070 22449070 C T PDLIM2 Missense_Mutation p.T507M 0.11 deleterious(0.03) benign(0.23) TCGA-TN-A7HI-01 8 28217203 28217203 G T ZNF395 Missense_Mutation p.L127M 0.11 tolerated(0.17) benign(0.068) TCGA-TN-A7HI-01 8 33356711 33356711 C T TTI2 Missense_Mutation p.A503T 0.11 tolerated_low_confidence(0.58) benign(0.001) TCGA-TN-A7HI-01 8 39626997 39626997 G A ADAM2 Missense_Mutation p.R376C 0.12 deleterious(0) possibly_damaging(0.676) TCGA-TN-A7HI-01 8 54859258 54859258 C T RGS20 Silent p.P231P 0.14 TCGA-TN-A7HI-01 8 73480508 73480508 G T KCNB2 Missense_Mutation p.W180L 0.13 deleterious(0.01) possibly_damaging(0.78) TCGA-TN-A7HI-01 8 77768233 77768233 A T ZFHX4 Missense_Mutation p.I3026F 0.08 probably_damaging(0.953) TCGA-TN-A7HI-01 8 89053641 89053641 A G MMP16 3'UTR 0.08 TCGA-TN-A7HI-01 9 2643960 2643960 G A VLDLR Splice_Site p.X356_splice 0.22 TCGA-TN-A7HI-01 9 96021600 96021600 G A WNK2 Missense_Mutation p.V924I 0.47 possibly_damaging(0.614) TCGA-TN-A7HI-01 X 38240682 38240682 G A OTC Missense_Mutation p.R129H 0.51 tolerated(0.07) probably_damaging(0.965) TCGA-TN-A7HJ-01 10 97917314 97917314 C T ZNF518A RNA 0.11 TCGA-TN-A7HJ-01 11 106810842 106810842 C T GUCY1A2 Missense_Mutation p.E184K 0.11 deleterious(0.03) benign(0.062) TCGA-TN-A7HJ-01 11 14902075 14902075 C T CYP2R1 Missense_Mutation p.E203K 0.18 tolerated(0.26) possibly_damaging(0.633) TCGA-TN-A7HJ-01 11 46911006 46911006 C A LRP4 Missense_Mutation p.C724F 0.12 deleterious(0) probably_damaging(1) TCGA-TN-A7HJ-01 11 4790428 4790428 G A OR51F1 Silent p.F240F 0.10 TCGA-TN-A7HJ-01 11 55904894 55904894 G - OR8J3 Frame_Shift_Del p.L101Wfs*12 0.12 TCGA-TN-A7HJ-01 11 6238878 6238878 G C FAM160A2 Silent p.A660A 0.06 TCGA-TN-A7HJ-01 11 65983656 65983656 G C PACS1 Missense_Mutation p.V243L 0.10 tolerated(0.13) benign(0.012) TCGA-TN-A7HJ-01 11 71730018 71730018 G A NUMA1 Missense_Mutation p.S198L 0.14 benign(0.004) TCGA-TN-A7HJ-01 11 9101001 9101001 A C SCUBE2 Missense_Mutation p.N104K 0.09 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HJ-01 12 21375252 21375252 G C SLCO1B1 Missense_Mutation p.L567F 0.06 deleterious(0.02) possibly_damaging(0.831) TCGA-TN-A7HJ-01 12 29670383 29670383 G A TMTC1 Nonsense_Mutation p.Q716* 0.08 TCGA-TN-A7HJ-01 12 46591532 46591532 C T SLC38A1 Missense_Mutation p.D445N 0.07 deleterious(0.02) benign(0.34) TCGA-TN-A7HJ-01 12 70747681 70747681 C T CNOT2 Nonsense_Mutation p.Q537* 0.11 TCGA-TN-A7HJ-01 12 81762966 81762966 T C PPFIA2 Missense_Mutation p.E425G 0.12 deleterious(0) probably_damaging(0.962) TCGA-TN-A7HJ-01 14 101012917 101012917 C A BEGAIN Missense_Mutation p.D33Y 0.08 deleterious(0) probably_damaging(0.976) TCGA-TN-A7HJ-01 14 20779545 20779545 A G CCNB1IP1 3'UTR 0.33 TCGA-TN-A7HJ-01 14 23374207 23374207 T A RBM23 Silent p.R247R 0.14 TCGA-TN-A7HJ-01 14 42356272 42356272 C A LRFN5 Silent p.A148A 0.10 TCGA-TN-A7HJ-01 14 76429803 76429803 C T TGFB3 Missense_Mutation p.R261H 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-TN-A7HJ-01 14 92472378 92472378 C G TRIP11 Missense_Mutation p.E648Q 0.05 deleterious(0) probably_damaging(0.922) TCGA-TN-A7HJ-01 15 40657441 40657441 C A DISP2 Missense_Mutation p.D271E 0.10 tolerated(0.1) benign(0.025) TCGA-TN-A7HJ-01 15 59224633 59224633 C G SLTM Missense_Mutation p.E58Q 0.10 deleterious(0.01) unknown(0) TCGA-TN-A7HJ-01 15 67524184 67524184 G A AAGAB Missense_Mutation p.A168V 0.06 deleterious(0) probably_damaging(0.977) TCGA-TN-A7HJ-01 15 73617293 73617293 C G HCN4 Intron 0.10 TCGA-TN-A7HJ-01 16 22320358 22320358 C T POLR3E Missense_Mutation p.S93F 0.14 deleterious(0) possibly_damaging(0.873) TCGA-TN-A7HJ-01 16 23678500 23678500 C G DCTN5 3'UTR 0.10 TCGA-TN-A7HJ-01 16 29998048 29998048 G A TAOK2 Missense_Mutation p.E819K 0.09 deleterious_low_confidence(0) benign(0) TCGA-TN-A7HJ-01 16 30750224 30750224 T C SRCAP Missense_Mutation p.S2955P 0.06 unknown(0) TCGA-TN-A7HJ-01 16 31089734 31089734 C T ZNF646 Missense_Mutation p.R697W 0.15 deleterious(0.03) benign(0.006) TCGA-TN-A7HJ-01 16 55522555 55522555 G A MMP2 Silent p.T311T 0.24 TCGA-TN-A7HJ-01 16 87678215 87678215 G A JPH3 Missense_Mutation p.R245H 0.10 deleterious(0.04) benign(0.259) TCGA-TN-A7HJ-01 17 43111349 43111349 A G DCAKD Intron 0.11 TCGA-TN-A7HJ-01 17 46685122 46685122 G C HOXB7 3'UTR 0.17 TCGA-TN-A7HJ-01 17 4686422 4686422 G A TM4SF5 Silent p.%3D 0.12 TCGA-TN-A7HJ-01 17 65144758 65144758 C G HELZ Missense_Mutation p.E850Q 0.14 tolerated(0.23) probably_damaging(0.968) TCGA-TN-A7HJ-01 17 66416401 66416401 G A ARSG Missense_Mutation p.E459K 0.09 tolerated(0.06) benign(0.297) TCGA-TN-A7HJ-01 17 66416435 66416435 G A ARSG Missense_Mutation p.R470K 0.09 tolerated(0.92) benign(0.001) TCGA-TN-A7HJ-01 17 7577070 7577071 - GA TP53 Frame_Shift_Ins p.R290Sfs*56 0.29 TCGA-TN-A7HJ-01 17 7807798 7807798 G C CHD3 Missense_Mutation p.E1370D 0.07 possibly_damaging(0.523) TCGA-TN-A7HJ-01 18 19780633 19780633 G A GATA6 Silent p.V545V 0.13 TCGA-TN-A7HJ-01 18 43207085 43207085 T A SLC14A2 Nonsense_Mutation p.L165* 0.14 TCGA-TN-A7HJ-01 19 110700 110700 C T OR4F17 Silent p.L8L 0.05 TCGA-TN-A7HJ-01 19 11304609 11304609 G A KANK2 Silent p.Y49Y 0.19 TCGA-TN-A7HJ-01 19 15302802 15302802 G A NOTCH3 Silent p.G216G 0.13 TCGA-TN-A7HJ-01 19 22940045 22940045 C G ZNF99 3'Flank 0.09 TCGA-TN-A7HJ-01 19 35639599 35639599 C T FXYD7 Missense_Mutation p.P12S 0.13 tolerated(0.27) benign(0.047) TCGA-TN-A7HJ-01 19 35644910 35644910 G C FXYD7 3'UTR 0.25 TCGA-TN-A7HJ-01 19 42085640 42085640 G T CEACAM21 Intron 0.10 TCGA-TN-A7HJ-01 19 50918125 50918127 CTC - POLD1 In_Frame_Del p.S816del 0.09 TCGA-TN-A7HJ-01 19 52000215 52000215 C T SIGLEC12 Silent p.R506R 0.13 TCGA-TN-A7HJ-01 19 54868206 54868206 C T LAIR1 Silent p.L159L 0.09 TCGA-TN-A7HJ-01 19 58384081 58384081 A G ZNF814 3'UTR 0.06 TCGA-TN-A7HJ-01 19 58489968 58489968 G A ZNF606 Missense_Mutation p.H694Y 0.05 tolerated(0.23) probably_damaging(0.99) TCGA-TN-A7HJ-01 19 58490065 58490065 G A ZNF606 Silent p.F661F 0.11 TCGA-TN-A7HJ-01 19 58490485 58490485 G C ZNF606 Missense_Mutation p.F521L 0.07 deleterious(0) probably_damaging(0.992) TCGA-TN-A7HJ-01 19 9408150 9408150 C G ZNF699 Missense_Mutation p.E98Q 0.10 deleterious(0.04) benign(0.186) TCGA-TN-A7HJ-01 1 151131291 151131291 G C TNFAIP8L2 Missense_Mutation p.D40H 0.14 deleterious(0) probably_damaging(0.995) TCGA-TN-A7HJ-01 1 152276466 152276466 C T FLG Silent p.Q3632Q 0.06 TCGA-TN-A7HJ-01 1 155180166 155180166 G T MTX1 Silent p.L186L 0.13 TCGA-TN-A7HJ-01 1 157773849 157773849 G A FCRL1 Silent p.T35T 0.07 TCGA-TN-A7HJ-01 1 162467790 162467790 G A UHMK1 5'UTR 0.10 TCGA-TN-A7HJ-01 1 180885943 180885943 G A KIAA1614 Missense_Mutation p.S235N 0.10 tolerated(0.7) benign(0.018) TCGA-TN-A7HJ-01 1 201287782 201287783 - GG PKP1 Frame_Shift_Ins p.E365Gfs*47 0.16 TCGA-TN-A7HJ-01 1 201333455 201333455 G A TNNT2 Missense_Mutation p.R144W 0.14 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HJ-01 1 201763688 201763688 C G NAV1 Nonsense_Mutation p.S1167* 0.09 TCGA-TN-A7HJ-01 1 223991102 223991102 G A TP53BP2 Silent p.L234L 0.19 TCGA-TN-A7HJ-01 1 240070945 240070945 T A CHRM3 Missense_Mutation p.V65D 0.08 deleterious(0) benign(0.027) TCGA-TN-A7HJ-01 1 38197164 38197164 G C EPHA10 Missense_Mutation p.Q528E 0.10 deleterious(0.03) possibly_damaging(0.832) TCGA-TN-A7HJ-01 1 62939740 62939740 T C DOCK7 Missense_Mutation p.Q2011R 0.12 deleterious(0.05) benign(0.444) TCGA-TN-A7HJ-01 1 6638722 6638722 G C TAS1R1 Missense_Mutation p.R535T 0.05 tolerated(0.73) benign(0.006) TCGA-TN-A7HJ-01 1 6639282 6639282 G C TAS1R1 Missense_Mutation p.E722Q 0.13 tolerated(0.34) benign(0.128) TCGA-TN-A7HJ-01 1 70446125 70446125 G A LRRC7 Missense_Mutation p.V221M 0.19 tolerated(0.25) benign(0.081) TCGA-TN-A7HJ-01 1 85121552 85121552 C T SSX2IP Missense_Mutation p.R451Q 0.09 deleterious(0.03) benign(0.032) TCGA-TN-A7HJ-01 1 94655540 94655540 G T ARHGAP29 Missense_Mutation p.Q461K 0.11 tolerated(0.05) benign(0.26) TCGA-TN-A7HJ-01 20 17434461 17434461 C T PCSK2 Silent p.D320D 0.12 TCGA-TN-A7HJ-01 20 29960947 29960947 C G DEFB118 Missense_Mutation p.L116V 0.10 tolerated_low_confidence(0.91) benign(0.014) TCGA-TN-A7HJ-01 20 37547206 37547206 C T PPP1R16B Missense_Mutation p.S534L 0.13 tolerated(0.05) benign(0.024) TCGA-TN-A7HJ-01 20 44259506 44259506 C G WFDC10A Intron 0.10 TCGA-TN-A7HJ-01 20 44473041 44473041 C G ACOT8 Missense_Mutation p.K169N 0.09 deleterious(0.02) benign(0.102) TCGA-TN-A7HJ-01 20 52188372 52188372 G C ZNF217 Missense_Mutation p.Q1020E 0.12 deleterious(0.02) possibly_damaging(0.708) TCGA-TN-A7HJ-01 20 9424842 9424842 A - PLCB4 Frame_Shift_Del p.K933Rfs*7 0.15 TCGA-TN-A7HJ-01 21 31045417 31045417 C A GRIK1 Missense_Mutation p.Q204H 0.15 tolerated(0.07) probably_damaging(0.927) TCGA-TN-A7HJ-01 21 38444895 38444895 T - PIGP 5'UTR 0.26 TCGA-TN-A7HJ-01 22 29656760 29656760 C A RHBDD3 Missense_Mutation p.W209L 0.30 tolerated(0.65) possibly_damaging(0.656) TCGA-TN-A7HJ-01 22 37637645 37637645 C T RAC2 Missense_Mutation p.G30E 0.10 tolerated_low_confidence(0.1) probably_damaging(1) TCGA-TN-A7HJ-01 22 42383623 42383623 C T SEPT3 Intron 0.16 TCGA-TN-A7HJ-01 2 111398996 111398996 G A BUB1 Nonsense_Mutation p.Q891* 0.07 TCGA-TN-A7HJ-01 2 122202539 122202539 C A CLASP1 Intron 0.15 TCGA-TN-A7HJ-01 2 128481927 128481927 T A WDR33 Silent p.S392S 0.13 TCGA-TN-A7HJ-01 2 136615495 136615495 G A MCM6 Missense_Mutation p.T481I 0.12 deleterious(0) probably_damaging(1) TCGA-TN-A7HJ-01 2 138771380 138771380 G A HNMT Missense_Mutation p.G187R 0.15 tolerated(1) benign(0.04) TCGA-TN-A7HJ-01 2 155102337 155102337 C T GALNT13 Silent p.V233V 0.13 TCGA-TN-A7HJ-01 2 166755204 166755204 C T TTC21B Missense_Mutation p.R981H 0.22 tolerated(0.05) benign(0.032) TCGA-TN-A7HJ-01 2 179732769 179732769 G A CCDC141 Missense_Mutation p.S853L 0.15 deleterious(0) probably_damaging(0.982) TCGA-TN-A7HJ-01 2 179974577 179974577 G C SESTD1 3'UTR 0.11 TCGA-TN-A7HJ-01 2 201304030 201304030 G A SPATS2L Missense_Mutation p.D211N 0.16 tolerated(0.06) probably_damaging(0.917) TCGA-TN-A7HJ-01 2 219922253 219922253 C A IHH Missense_Mutation p.R160L 0.20 deleterious(0.02) possibly_damaging(0.858) TCGA-TN-A7HJ-01 2 25042882 25042882 G A ADCY3 Silent p.F1118F 0.20 TCGA-TN-A7HJ-01 2 25505442 25505442 G A DNMT3A Missense_Mutation p.P106S 0.07 tolerated(0.47) benign(0) TCGA-TN-A7HJ-01 2 54849515 54849515 G C SPTBN1 Missense_Mutation p.E319Q 0.10 tolerated(0.08) possibly_damaging(0.531) TCGA-TN-A7HJ-01 2 99725295 99725295 C T TSGA10 Splice_Site p.X70_splice 0.30 TCGA-TN-A7HJ-01 3 154147055 154147055 A G GPR149 Missense_Mutation p.L117P 0.10 deleterious(0) probably_damaging(0.987) TCGA-TN-A7HJ-01 3 184922274 184922274 C T EHHADH Silent p.K280K 0.06 TCGA-TN-A7HJ-01 3 186504028 186504028 A T EIF4A2 Missense_Mutation p.Y198F 0.09 deleterious(0) benign(0.36) TCGA-TN-A7HJ-01 3 190106095 190106095 C T CLDN16 Missense_Mutation p.H63Y 0.18 tolerated_low_confidence(1) benign(0.003) TCGA-TN-A7HJ-01 3 195512843 195512843 C T MUC4 Missense_Mutation p.A1870T 0.16 unknown(0) TCGA-TN-A7HJ-01 4 139100509 139100509 G A SLC7A11 Missense_Mutation p.L436F 0.34 tolerated(0.78) benign(0.019) TCGA-TN-A7HJ-01 4 15613901 15613901 C T FBXL5 Missense_Mutation p.D663N 0.14 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HJ-01 4 175897464 175897464 G - ADAM29 Frame_Shift_Del p.K264Nfs*29 0.13 TCGA-TN-A7HJ-01 4 38800318 38800318 C G TLR1 Missense_Mutation p.Q45H 0.08 tolerated(0.42) possibly_damaging(0.478) TCGA-TN-A7HJ-01 4 57896426 57896426 C A POLR2B Missense_Mutation p.A1099E 0.24 deleterious(0) possibly_damaging(0.595) TCGA-TN-A7HJ-01 4 6718341 6718341 C G BLOC1S4 Missense_Mutation p.I135M 0.11 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HJ-01 4 85569965 85569965 C T CDS1 3'UTR 0.20 TCGA-TN-A7HJ-01 5 140563856 140563856 G A PCDHB16 Silent p.E574E 0.47 TCGA-TN-A7HJ-01 5 140594050 140594050 C G PCDHB13 Missense_Mutation p.Q119E 0.06 tolerated_low_confidence(0.06) benign(0.004) TCGA-TN-A7HJ-01 5 161324518 161324518 C G GABRA1 3'UTR 0.10 TCGA-TN-A7HJ-01 5 16694713 16694713 C T MYO10 Missense_Mutation p.M1189I 0.09 tolerated(0.15) benign(0.001) TCGA-TN-A7HJ-01 5 170819713 170819713 G A NPM1 Splice_Site p.X118_splice 0.19 TCGA-TN-A7HJ-01 5 41004595 41004595 G A MROH2B Silent p.I1349I 0.08 TCGA-TN-A7HJ-01 5 41005005 41005005 G C MROH2B Missense_Mutation p.I1294M 0.07 tolerated(0.23) benign(0.062) TCGA-TN-A7HJ-01 5 73136479 73136479 G T ARHGEF28 Missense_Mutation p.A441S 0.23 tolerated(0.54) benign(0.011) TCGA-TN-A7HJ-01 5 82815353 82815353 G C VCAN Missense_Mutation p.V410L 0.12 tolerated(0.16) benign(0.214) TCGA-TN-A7HJ-01 5 82816337 82816337 G C VCAN Missense_Mutation p.E738Q 0.08 tolerated(0.05) benign(0.104) TCGA-TN-A7HJ-01 6 130363878 130363878 G A L3MBTL3 Missense_Mutation p.E12K 0.13 tolerated(0.06) possibly_damaging(0.64) TCGA-TN-A7HJ-01 6 165711543 165711543 C T C6orf118 Silent p.T328T 0.20 TCGA-TN-A7HJ-01 6 39847146 39847146 C A DAAM2 Missense_Mutation p.P580T 0.06 deleterious(0.01) benign(0.001) TCGA-TN-A7HJ-01 6 46793105 46793105 C T MEP1A Missense_Mutation p.S218L 0.11 deleterious(0) probably_damaging(0.973) TCGA-TN-A7HJ-01 6 53374003 53374003 C T GCLC Missense_Mutation p.D267N 0.11 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HJ-01 6 53374046 53374046 C T GCLC Silent p.V252V 0.11 TCGA-TN-A7HJ-01 7 42958792 42958792 G C PSMA2 Intron 0.09 TCGA-TN-A7HJ-01 7 72657830 72657830 G C GTF2IRD2P1 RNA 0.09 TCGA-TN-A7HJ-01 7 83590889 83590889 T A SEMA3A Missense_Mutation p.D705V 0.11 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HJ-01 8 125033892 125033892 C T FER1L6 Missense_Mutation p.R706C 0.20 deleterious(0) possibly_damaging(0.893) TCGA-TN-A7HJ-01 8 133858108 133858108 A G PHF20L1 Missense_Mutation p.I998M 0.15 tolerated(0.21) benign(0.025) TCGA-TN-A7HJ-01 8 139209782 139209782 G T FAM135B Missense_Mutation p.P267Q 0.07 deleterious(0) probably_damaging(0.994) TCGA-TN-A7HJ-01 8 1905420 1905420 G A ARHGEF10 Silent p.L1342L 0.17 TCGA-TN-A7HJ-01 8 39776344 39776344 G A IDO1 Missense_Mutation p.R105K 0.13 tolerated(0.23) benign(0.002) TCGA-TN-A7HJ-01 8 53030949 53030949 C G ST18 Silent p.L936L 0.07 TCGA-TN-A7HJ-01 8 55540767 55540767 C G RP1 Missense_Mutation p.P1442R 0.17 deleterious(0) benign(0.093) TCGA-TN-A7HJ-01 8 59404982 59404982 C T CYP7A1 Missense_Mutation p.R382Q 0.08 deleterious(0) probably_damaging(1) TCGA-TN-A7HJ-01 8 61121329 61121329 T C CA8 3'UTR 0.25 TCGA-TN-A7HJ-01 8 63942735 63942735 G A GGH Missense_Mutation p.S89F 0.08 deleterious(0) probably_damaging(0.983) TCGA-TN-A7HJ-01 9 131022986 131022986 G C GOLGA2 Missense_Mutation p.L479V 0.12 tolerated(0.13) benign(0.072) TCGA-TN-A7HJ-01 9 40774518 40774518 C T ZNF658 Missense_Mutation p.D253N 0.14 tolerated(0.07) possibly_damaging(0.755) TCGA-TN-A7HJ-01 9 69424178 69424178 C T ANKRD20A4 3'UTR 0.19 TCGA-TN-A7HJ-01 9 72521136 72521136 A G C9orf135 3'UTR 0.26 TCGA-TN-A7HJ-01 X 14927078 14927078 A G MOSPD2 Missense_Mutation p.E225G 0.48 deleterious(0) probably_damaging(0.994) TCGA-TN-A7HJ-01 X 153036810 153036810 G A PLXNB3 Missense_Mutation p.V790I 0.60 tolerated(0.2) possibly_damaging(0.477) TCGA-TN-A7HJ-01 X 153670499 153670499 G T GDI1 Missense_Mutation p.A345S 0.65 tolerated(0.34) benign(0.276) TCGA-TN-A7HJ-01 X 48046216 48046216 A G SSX5 3'UTR 0.19 TCGA-TN-A7HL-01 10 103909730 103909730 G C PPRC1 Missense_Mutation p.D1647H 0.20 deleterious(0.03) possibly_damaging(0.861) TCGA-TN-A7HL-01 10 105110832 105110832 G A PCGF6 5'UTR 0.17 TCGA-TN-A7HL-01 10 105110849 105110849 G A PCGF6 5'UTR 0.17 TCGA-TN-A7HL-01 10 105926435 105926435 C G WDR96 Missense_Mutation p.L950F 0.23 tolerated(0.18) benign(0.033) TCGA-TN-A7HL-01 10 105927438 105927438 C G WDR96 Missense_Mutation p.E917Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-TN-A7HL-01 10 108339186 108339186 C T SORCS1 Silent p.L1104L 0.24 TCGA-TN-A7HL-01 10 111967761 111967761 C G MXI1 Missense_Mutation p.H65Q 0.17 deleterious_low_confidence(0.04) benign(0.002) TCGA-TN-A7HL-01 10 115540397 115540397 G A PLEKHS1 3'Flank 0.22 TCGA-TN-A7HL-01 10 12006030 12006030 T A UPF2 Missense_Mutation p.H721L 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-TN-A7HL-01 10 123846480 123846480 C T TACC2 Silent p.L1489L 0.21 TCGA-TN-A7HL-01 10 126454034 126454034 C T METTL10 Silent p.L181L 0.22 TCGA-TN-A7HL-01 10 129868020 129868020 G A PTPRE Missense_Mutation p.E358K 0.21 deleterious(0) possibly_damaging(0.549) TCGA-TN-A7HL-01 10 129902688 129902688 G C MKI67 Missense_Mutation p.F2472L 0.24 tolerated(0.58) benign(0.212) TCGA-TN-A7HL-01 10 14861940 14861940 C G CDNF 3'Flank 0.23 TCGA-TN-A7HL-01 10 14923523 14923523 C T SUV39H2 Missense_Mutation p.S19L 0.23 tolerated(0.06) benign(0.162) TCGA-TN-A7HL-01 10 14950616 14950616 G C DCLRE1C Missense_Mutation p.L624V 0.21 tolerated_low_confidence(0.7) benign(0.002) TCGA-TN-A7HL-01 10 18903502 18903502 A T NSUN6 Silent p.I154I 0.17 TCGA-TN-A7HL-01 10 24762980 24762980 G C KIAA1217 Missense_Mutation p.R557T 0.11 tolerated(0.49) probably_damaging(0.996) TCGA-TN-A7HL-01 10 27324114 27324114 C T ANKRD26 Missense_Mutation p.E1089K 0.20 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HL-01 10 29822109 29822109 G A SVIL Missense_Mutation p.S396L 0.22 tolerated_low_confidence(0.26) benign(0.043) TCGA-TN-A7HL-01 10 31810616 31810616 G A ZEB1 Missense_Mutation p.D786N 0.27 tolerated(0.38) possibly_damaging(0.735) TCGA-TN-A7HL-01 10 35484998 35484998 G C CREM Intron 0.26 TCGA-TN-A7HL-01 10 38654457 38654457 C T HSD17B7P2 RNA 0.28 TCGA-TN-A7HL-01 10 54053730 54053730 G T PRKG1 3'UTR 0.24 TCGA-TN-A7HL-01 10 5963255 5963255 G A FBXO18 Missense_Mutation p.G763E 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-TN-A7HL-01 10 6527218 6527218 C G PRKCQ Missense_Mutation p.R305T 0.29 tolerated(0.21) benign(0.017) TCGA-TN-A7HL-01 10 70253224 70253224 G C SLC25A16 Missense_Mutation p.F175L 0.19 tolerated(0.25) probably_damaging(0.999) TCGA-TN-A7HL-01 10 70253232 70253232 G A SLC25A16 Missense_Mutation p.H173Y 0.20 deleterious(0.01) probably_damaging(0.961) TCGA-TN-A7HL-01 10 70253311 70253311 G C SLC25A16 Missense_Mutation p.I146M 0.16 tolerated(0.23) possibly_damaging(0.823) TCGA-TN-A7HL-01 10 7423790 7423790 G A SFMBT2 Missense_Mutation p.S24L 0.15 tolerated_low_confidence(0.09) benign(0.001) TCGA-TN-A7HL-01 10 75011546 75011546 G C MRPS16 Silent p.L83L 0.28 TCGA-TN-A7HL-01 10 75435092 75435092 G A AGAP5 Silent p.I442I 0.20 TCGA-TN-A7HL-01 10 75535419 75535419 C T FUT11 Silent p.I485I 0.22 TCGA-TN-A7HL-01 10 75535576 75535576 C G FUT11 3'UTR 0.22 TCGA-TN-A7HL-01 10 88416979 88416979 G A OPN4 Missense_Mutation p.M106I 0.22 tolerated_low_confidence(0.54) benign(0.001) TCGA-TN-A7HL-01 10 90332795 90332795 G C RNLS Missense_Mutation p.R131G 0.21 tolerated(0.58) benign(0.018) TCGA-TN-A7HL-01 10 91198720 91198720 C G SLC16A12 Missense_Mutation p.L223F 0.21 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 10 94291595 94291595 C T IDE Missense_Mutation p.E191K 0.23 tolerated(0.07) benign(0.115) TCGA-TN-A7HL-01 11 102826070 102826070 C G MMP13 Missense_Mutation p.M91I 0.30 tolerated(0.05) probably_damaging(0.955) TCGA-TN-A7HL-01 11 103780254 103780254 C G PDGFD 3'UTR 0.52 TCGA-TN-A7HL-01 11 10823243 10823243 G T EIF4G2 Silent p.R460R 0.24 TCGA-TN-A7HL-01 11 10825928 10825928 G A EIF4G2 Missense_Mutation p.S130L 0.21 deleterious(0.01) benign(0.109) TCGA-TN-A7HL-01 11 118250276 118250276 C T UBE4A Nonsense_Mutation p.R570* 0.24 TCGA-TN-A7HL-01 11 119050489 119050489 G A NLRX1 Missense_Mutation p.D587N 0.29 tolerated(0.09) probably_damaging(0.998) TCGA-TN-A7HL-01 11 120170351 120170351 C G POU2F3 Missense_Mutation p.P95A 0.42 deleterious(0.03) benign(0.228) TCGA-TN-A7HL-01 11 123601509 123601509 G A ZNF202 Missense_Mutation p.R30W 0.27 deleterious(0.02) possibly_damaging(0.708) TCGA-TN-A7HL-01 11 1262245 1262245 G A MUC5B Missense_Mutation p.E1379K 0.22 unknown(0) TCGA-TN-A7HL-01 11 1309868 1309868 C T TOLLIP Missense_Mutation p.V169I 0.11 tolerated(0.09) benign(0.021) TCGA-TN-A7HL-01 11 134019104 134019104 G A JAM3 3'UTR 0.18 TCGA-TN-A7HL-01 11 17414506 17414506 C A ABCC8 3'UTR 0.28 TCGA-TN-A7HL-01 11 18735431 18735431 G A IGSF22 Missense_Mutation p.S688L 0.27 tolerated(0.2) benign(0.11) TCGA-TN-A7HL-01 11 18956124 18956124 C T MRGPRX1 Missense_Mutation p.A70T 0.17 tolerated(0.05) benign(0.149) TCGA-TN-A7HL-01 11 20101658 20101658 C T NAV2 Missense_Mutation p.S1799F 0.22 deleterious(0) probably_damaging(0.997) TCGA-TN-A7HL-01 11 27016437 27016437 G A FIBIN Missense_Mutation p.E122K 0.27 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-TN-A7HL-01 11 27016448 27016448 G A FIBIN Silent p.Q125Q 0.27 TCGA-TN-A7HL-01 11 428114 428114 G A ANO9 Silent p.L436L 0.25 TCGA-TN-A7HL-01 11 4510412 4510412 C A OR52K1 Silent p.I94I 0.22 TCGA-TN-A7HL-01 11 45958121 45958121 C G PHF21A Splice_Site p.X536_splice 0.21 TCGA-TN-A7HL-01 11 47494778 47494778 C T CELF1 Missense_Mutation p.E425K 0.23 deleterious(0) possibly_damaging(0.859) TCGA-TN-A7HL-01 11 47752952 47752952 G A FNBP4 Missense_Mutation p.S661L 0.26 deleterious(0.01) benign(0.164) TCGA-TN-A7HL-01 11 48157658 48157658 G C PTPRJ Missense_Mutation p.K561N 0.19 tolerated(0.28) benign(0.21) TCGA-TN-A7HL-01 11 55587921 55587921 C T OR5D18 Silent p.V272V 0.23 TCGA-TN-A7HL-01 11 55606517 55606517 C G OR5D16 Nonsense_Mutation p.S97* 0.21 TCGA-TN-A7HL-01 11 58384275 58384275 G A ZFP91 Missense_Mutation p.E397K 0.15 deleterious(0.02) possibly_damaging(0.631) TCGA-TN-A7HL-01 11 58919321 58919321 C T FAM111A Silent p.F60F 0.19 TCGA-TN-A7HL-01 11 60150648 60150648 C G MS4A7 Missense_Mutation p.H12D 0.21 tolerated(0.86) benign(0) TCGA-TN-A7HL-01 11 61058327 61058327 C A VWCE Missense_Mutation p.R123L 0.24 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 11 61563263 61563263 C G FEN1 Missense_Mutation p.L144V 0.19 deleterious(0.02) probably_damaging(0.97) TCGA-TN-A7HL-01 11 62287462 62287462 G A AHNAK Silent p.I4809I 0.30 TCGA-TN-A7HL-01 11 62489736 62489736 G A HNRNPUL2 Silent p.L404L 0.19 TCGA-TN-A7HL-01 11 62559355 62559355 C G TMEM223 Missense_Mutation p.E38Q 0.33 tolerated(0.27) benign(0.011) TCGA-TN-A7HL-01 11 62559383 62559383 C T TMEM223 Silent p.T28T 0.33 TCGA-TN-A7HL-01 11 6412670 6412670 G A SMPD1 Silent p.L125L 0.31 TCGA-TN-A7HL-01 11 64756793 64756793 C T BATF2 Silent p.L211L 0.28 TCGA-TN-A7HL-01 11 64954685 64954685 G A CAPN1 Splice_Site p.X254_splice 0.27 TCGA-TN-A7HL-01 11 65350672 65350672 G A EHBP1L1 Silent p.E843E 0.30 TCGA-TN-A7HL-01 11 65351862 65351862 G A EHBP1L1 Missense_Mutation p.D1082N 0.35 deleterious(0) probably_damaging(0.939) TCGA-TN-A7HL-01 11 66326809 66326809 C T CTSF 3'Flank 0.14 TCGA-TN-A7HL-01 11 66626559 66626559 C G LRFN4 Missense_Mutation p.I448M 0.30 deleterious(0.02) possibly_damaging(0.688) TCGA-TN-A7HL-01 11 67402487 67402487 C A TBX10 Missense_Mutation p.M85I 0.26 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 11 67402551 67402551 C G TBX10 Missense_Mutation p.R64T 0.27 tolerated(0.13) benign(0) TCGA-TN-A7HL-01 11 71724588 71724588 G A NUMA1 Missense_Mutation p.R1321C 0.26 probably_damaging(0.999) TCGA-TN-A7HL-01 11 71941167 71941167 G A INPPL1 Silent p.V314V 0.13 TCGA-TN-A7HL-01 11 8752626 8752626 G T ST5 Missense_Mutation p.H71N 0.33 tolerated_low_confidence(1) benign(0) TCGA-TN-A7HL-01 11 9225277 9225277 G A DENND5A Silent p.L293L 0.23 TCGA-TN-A7HL-01 11 92532330 92532330 G C FAT3 Missense_Mutation p.E2051Q 0.24 possibly_damaging(0.882) TCGA-TN-A7HL-01 11 93529598 93529598 G A MED17 Silent p.L345L 0.22 TCGA-TN-A7HL-01 12 102069095 102069095 G A MYBPC1 Silent p.V938V 0.12 TCGA-TN-A7HL-01 12 108924012 108924012 T G SART3 Missense_Mutation p.K608Q 0.20 deleterious(0.02) possibly_damaging(0.866) TCGA-TN-A7HL-01 12 10978133 10978133 C T TAS2R10 Missense_Mutation p.E246K 0.25 deleterious(0.05) possibly_damaging(0.716) TCGA-TN-A7HL-01 12 10978173 10978173 G A TAS2R10 Silent p.F232F 0.20 TCGA-TN-A7HL-01 12 10978281 10978282 - A TAS2R10 Frame_Shift_Ins p.L196Ffs*104 0.26 TCGA-TN-A7HL-01 12 110390897 110390899 CTT - GIT2 In_Frame_Del p.K414del 0.35 TCGA-TN-A7HL-01 12 112509855 112509855 C T NAA25 Missense_Mutation p.E294K 0.16 tolerated(0.46) benign(0.016) TCGA-TN-A7HL-01 12 113830654 113830654 C T SDS 3'UTR 0.29 TCGA-TN-A7HL-01 12 117768313 117768313 C T NOS1 Missense_Mutation p.A188T 0.11 tolerated_low_confidence(0.63) benign(0) TCGA-TN-A7HL-01 12 118577301 118577301 C A PEBP1 Silent p.I97I 0.22 TCGA-TN-A7HL-01 12 124242530 124242530 C G ATP6V0A2 Nonsense_Mutation p.S841* 0.17 TCGA-TN-A7HL-01 12 124421533 124421533 G A CCDC92 3'UTR 0.21 TCGA-TN-A7HL-01 12 129558525 129558525 G A TMEM132D Silent p.I1065I 0.20 TCGA-TN-A7HL-01 12 13221288 13221288 G T KIAA1467 Missense_Mutation p.S398I 0.25 deleterious(0) probably_damaging(0.992) TCGA-TN-A7HL-01 12 133310989 133310989 C G ANKLE2 Missense_Mutation p.D625H 0.21 tolerated(0.29) possibly_damaging(0.875) TCGA-TN-A7HL-01 12 14923862 14923862 C T HIST4H4 Missense_Mutation p.E53K 0.30 tolerated(0.1) benign(0.122) TCGA-TN-A7HL-01 12 14976313 14976313 C T C12orf60 Silent p.I148I 0.27 TCGA-TN-A7HL-01 12 16757906 16757906 G C LMO3 Intron 0.33 TCGA-TN-A7HL-01 12 22643059 22643059 C G C2CD5 Missense_Mutation p.Q452H 0.19 tolerated(0.56) benign(0.005) TCGA-TN-A7HL-01 12 30878975 30878975 C T CAPRIN2 Silent p.P610P 0.17 TCGA-TN-A7HL-01 12 41967558 41967558 A G PDZRN4 Missense_Mutation p.K993E 0.16 deleterious(0) probably_damaging(0.993) TCGA-TN-A7HL-01 12 49448120 49448120 C T KMT2D Silent p.V160V 0.31 TCGA-TN-A7HL-01 12 52754767 52754767 C T KRT85 Missense_Mutation p.R465H 0.24 tolerated(0.42) benign(0.354) TCGA-TN-A7HL-01 12 52912867 52912867 C T KRT5 Silent p.V211V 0.26 TCGA-TN-A7HL-01 12 54422624 54422624 G A HOXC6 Missense_Mutation p.E107K 0.22 tolerated(0.45) benign(0.156) TCGA-TN-A7HL-01 12 57569880 57569880 G A LRP1 Missense_Mutation p.D1328N 0.18 benign(0.195) TCGA-TN-A7HL-01 12 57592321 57592321 G A LRP1 Missense_Mutation p.V3182I 0.35 benign(0.061) TCGA-TN-A7HL-01 12 58002900 58002900 G A DTX3 Missense_Mutation p.E337K 0.10 deleterious(0.01) benign(0.048) TCGA-TN-A7HL-01 12 58002908 58002908 G A DTX3 Silent p.L339L 0.13 TCGA-TN-A7HL-01 12 58002910 58002910 G A DTX3 Missense_Mutation p.R340K 0.13 tolerated(0.66) benign(0.01) TCGA-TN-A7HL-01 12 6125817 6125817 G A VWF Missense_Mutation p.R1726C 0.17 tolerated(0.06) benign(0.002) TCGA-TN-A7HL-01 12 63226041 63226041 C G PPM1H Missense_Mutation p.K88N 0.35 deleterious(0) probably_damaging(0.996) TCGA-TN-A7HL-01 12 64813912 64813912 G A XPOT Silent p.V184V 0.23 TCGA-TN-A7HL-01 12 66308868 66308868 G T HMGA2 Intron 0.18 TCGA-TN-A7HL-01 12 6637460 6637460 C G NCAPD2 Missense_Mutation p.L1089V 0.29 deleterious(0.04) benign(0.248) TCGA-TN-A7HL-01 12 6649599 6649599 C T IFFO1 3'UTR 0.24 TCGA-TN-A7HL-01 12 66856789 66856789 C A GRIP1 Missense_Mutation p.Q319H 0.19 tolerated(0.15) benign(0.288) TCGA-TN-A7HL-01 12 6954844 6954844 C T GNB3 Missense_Mutation p.S265F 0.18 deleterious(0) benign(0.164) TCGA-TN-A7HL-01 12 6981332 6981332 G A SPSB2 Intron 0.28 TCGA-TN-A7HL-01 12 7014813 7014813 G A LRRC23 Missense_Mutation p.D6N 0.18 tolerated_low_confidence(0.19) unknown(0) TCGA-TN-A7HL-01 12 7014885 7014885 G T LRRC23 Nonsense_Mutation p.E30* 0.23 TCGA-TN-A7HL-01 12 73046848 73046848 G A TRHDE Missense_Mutation p.D921N 0.27 tolerated(0.23) possibly_damaging(0.795) TCGA-TN-A7HL-01 12 7519883 7519883 C T CD163L1 Missense_Mutation p.E1410K 0.21 deleterious(0.03) benign(0.338) TCGA-TN-A7HL-01 12 7548992 7548992 C G CD163L1 Silent p.L583L 0.18 TCGA-TN-A7HL-01 12 79679678 79679678 G T SYT1 Missense_Mutation p.G93V 0.15 tolerated(0.27) benign(0.266) TCGA-TN-A7HL-01 12 85441137 85441137 C T LRRIQ1 Silent p.L189L 0.22 TCGA-TN-A7HL-01 12 85450000 85450000 G A LRRIQ1 Missense_Mutation p.D477N 0.25 tolerated(0.08) benign(0.142) TCGA-TN-A7HL-01 12 85450762 85450762 G C LRRIQ1 Missense_Mutation p.E731Q 0.19 tolerated(0.31) benign(0.015) TCGA-TN-A7HL-01 12 85515476 85515476 G A LRRIQ1 Missense_Mutation p.D1127N 0.23 tolerated(1) benign(0) TCGA-TN-A7HL-01 12 90010788 90010788 C T ATP2B1 Missense_Mutation p.E620K 0.20 tolerated(0.21) benign(0.014) TCGA-TN-A7HL-01 12 90018085 90018085 C G ATP2B1 Missense_Mutation p.E407Q 0.22 tolerated(0.06) benign(0.016) TCGA-TN-A7HL-01 12 96653599 96653599 G A ELK3 Missense_Mutation p.A365T 0.13 deleterious(0) probably_damaging(0.982) TCGA-TN-A7HL-01 12 97330420 97330420 C G NEDD1 Missense_Mutation p.L258V 0.17 deleterious(0) probably_damaging(0.977) TCGA-TN-A7HL-01 13 103710723 103710723 C A SLC10A2 Missense_Mutation p.M129I 0.25 deleterious(0.01) benign(0.443) TCGA-TN-A7HL-01 13 111870185 111870185 G A ARHGEF7 Missense_Mutation p.G231S 0.26 deleterious(0) probably_damaging(0.99) TCGA-TN-A7HL-01 13 28155802 28155802 C G LNX2 Missense_Mutation p.Q13H 0.24 deleterious(0.02) benign(0.002) TCGA-TN-A7HL-01 13 28601325 28601325 G A FLT3 Silent p.L703L 0.40 TCGA-TN-A7HL-01 13 58209159 58209159 C T PCDH17 Nonsense_Mutation p.Q827* 0.30 TCGA-TN-A7HL-01 14 102901116 102901116 C T TECPR2 Silent p.L654L 0.15 TCGA-TN-A7HL-01 14 103987706 103987706 C T CKB Missense_Mutation p.E183K 0.18 tolerated(0.08) probably_damaging(1) TCGA-TN-A7HL-01 14 105417917 105417917 G C AHNAK2 Missense_Mutation p.L1291V 0.19 possibly_damaging(0.567) TCGA-TN-A7HL-01 14 20404156 20404156 G A OR4K1 Missense_Mutation p.E111K 0.09 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HL-01 14 20404616 20404616 G C OR4K1 Missense_Mutation p.R264T 0.04 tolerated(0.68) possibly_damaging(0.685) TCGA-TN-A7HL-01 14 20528443 20528443 G A OR4L1 Silent p.K80K 0.52 TCGA-TN-A7HL-01 14 22772313 22772313 C G TRAV39 Nonsense_Mutation p.S69* 0.68 TCGA-TN-A7HL-01 14 23900999 23900999 G A MYH7 Missense_Mutation p.R204C 0.11 deleterious(0.01) possibly_damaging(0.579) TCGA-TN-A7HL-01 14 23901905 23901905 C T MYH7 Missense_Mutation p.E149K 0.21 deleterious(0.02) possibly_damaging(0.852) TCGA-TN-A7HL-01 14 24909944 24909944 G C SDR39U1 Intron 0.33 TCGA-TN-A7HL-01 14 24911433 24911433 C G SDR39U1 Missense_Mutation p.D53H 0.27 tolerated(0.07) benign(0.127) TCGA-TN-A7HL-01 14 35577222 35577222 G C PPP2R3C Intron 0.33 TCGA-TN-A7HL-01 14 39734530 39734530 C G CTAGE5 5'Flank 0.26 TCGA-TN-A7HL-01 14 45584108 45584108 C G PRPF39 Missense_Mutation p.P668A 0.23 tolerated_low_confidence(0.13) benign(0.001) TCGA-TN-A7HL-01 14 51094928 51094928 C G ATL1 Missense_Mutation p.I433M 0.30 tolerated(0.09) benign(0.06) TCGA-TN-A7HL-01 14 55604802 55604802 C T LGALS3 Nonsense_Mutation p.Q20* 0.27 TCGA-TN-A7HL-01 14 59930451 59930451 C G GPR135 3'UTR 0.08 TCGA-TN-A7HL-01 14 69805469 69805469 G A GALNT16 Missense_Mutation p.E357K 0.31 deleterious(0.04) possibly_damaging(0.64) TCGA-TN-A7HL-01 14 70925333 70925333 G C ADAM21 Missense_Mutation p.E373Q 0.30 tolerated(0.2) benign(0.035) TCGA-TN-A7HL-01 14 74404816 74404816 C G FAM161B Splice_Site p.X530_splice 0.33 TCGA-TN-A7HL-01 14 75538544 75538544 C T ZC2HC1C Missense_Mutation p.S423F 0.34 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HL-01 14 94152935 94152935 G A UNC79 Missense_Mutation p.M2141I 0.20 tolerated(0.45) benign(0.041) TCGA-TN-A7HL-01 14 94700935 94700935 C G PPP4R4 Silent p.L220L 0.16 TCGA-TN-A7HL-01 14 99969060 99969060 C G CCNK Missense_Mutation p.I250M 0.22 deleterious(0) probably_damaging(0.997) TCGA-TN-A7HL-01 15 100943013 100943013 C T CERS3 Missense_Mutation p.E353K 0.24 tolerated(0.2) benign(0.002) TCGA-TN-A7HL-01 15 25492527 25492527 G C SNORD115-42 RNA 0.16 TCGA-TN-A7HL-01 15 25615787 25615787 G C UBE3A Missense_Mutation p.Q515E 0.27 tolerated(0.22) benign(0.053) TCGA-TN-A7HL-01 15 28929356 28929356 C G RP11-578F21.2 5'Flank 0.18 TCGA-TN-A7HL-01 15 34395296 34395296 C G PGBD4 Silent p.L188L 0.25 TCGA-TN-A7HL-01 15 38229091 38229091 G A TMCO5A Missense_Mutation p.E62K 0.27 tolerated(0.42) possibly_damaging(0.891) TCGA-TN-A7HL-01 15 39874094 39874094 G C THBS1 Silent p.L12L 0.12 TCGA-TN-A7HL-01 15 40512778 40512778 G A BUB1B Missense_Mutation p.E991K 0.21 tolerated(0.13) benign(0.14) TCGA-TN-A7HL-01 15 40914270 40914270 C G CASC5 Missense_Mutation p.S629C 0.27 tolerated(0.06) benign(0.006) TCGA-TN-A7HL-01 15 40915624 40915624 G A CASC5 Silent p.L1080L 0.20 TCGA-TN-A7HL-01 15 40949601 40949601 G A CASC5 Missense_Mutation p.E2241K 0.21 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HL-01 15 40949621 40949621 G T CASC5 Missense_Mutation p.K2247N 0.20 tolerated(0.28) benign(0.331) TCGA-TN-A7HL-01 15 44211674 44211674 C T FRMD5 Silent p.L104L 0.21 TCGA-TN-A7HL-01 15 45464441 45464441 G A SHF Missense_Mutation p.S290F 0.23 deleterious(0.02) possibly_damaging(0.543) TCGA-TN-A7HL-01 15 52725455 52725455 C G MYO5A Missense_Mutation p.E19Q 0.28 deleterious(0.01) benign(0.412) TCGA-TN-A7HL-01 15 55681565 55681565 C A CCPG1 Nonsense_Mutation p.E20* 0.20 TCGA-TN-A7HL-01 15 55783446 55783446 C G DYX1C1 Missense_Mutation p.E94Q 0.20 deleterious(0.04) benign(0.252) TCGA-TN-A7HL-01 15 56387309 56387309 C A RFX7 Nonsense_Mutation p.E873* 0.24 TCGA-TN-A7HL-01 15 56387817 56387817 C A RFX7 Silent p.G703G 0.21 TCGA-TN-A7HL-01 15 56388213 56388213 C T RFX7 Silent p.Q571Q 0.25 TCGA-TN-A7HL-01 15 56388287 56388287 C T RFX7 Missense_Mutation p.E547K 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.716) TCGA-TN-A7HL-01 15 56388290 56388290 C T RFX7 Missense_Mutation p.D546N 0.20 deleterious_low_confidence(0) benign(0.189) TCGA-TN-A7HL-01 15 56388408 56388408 C T RFX7 Silent p.R506R 0.17 TCGA-TN-A7HL-01 15 67547210 67547210 G T IQCH 5'UTR 0.25 TCGA-TN-A7HL-01 15 69348931 69348931 G A NOX5 Silent p.K731K 0.25 TCGA-TN-A7HL-01 15 71211413 71211413 C T LRRC49 Missense_Mutation p.H203Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-TN-A7HL-01 15 74364606 74364606 G A GOLGA6A Missense_Mutation p.R516W 0.03 tolerated(0.16) benign(0.006) TCGA-TN-A7HL-01 15 75941771 75941771 G C SNX33 Missense_Mutation p.E110Q 0.24 tolerated(0.41) probably_damaging(0.986) TCGA-TN-A7HL-01 15 78470989 78470989 C T ACSBG1 Missense_Mutation p.D557N 0.19 tolerated(0.33) benign(0.344) TCGA-TN-A7HL-01 15 79089016 79089016 C T ADAMTS7 Silent p.E245E 0.24 TCGA-TN-A7HL-01 15 90784881 90784881 C T GDPGP1 Silent p.L247L 0.21 TCGA-TN-A7HL-01 16 19027857 19027857 G C TMC7 Missense_Mutation p.E133Q 0.26 tolerated(0.11) benign(0.221) TCGA-TN-A7HL-01 16 19027917 19027917 G A TMC7 Missense_Mutation p.E153K 0.32 deleterious(0.02) possibly_damaging(0.877) TCGA-TN-A7HL-01 16 19661701 19661701 C T C16orf62 Intron 0.13 TCGA-TN-A7HL-01 16 20043513 20043513 C T GPR139 Silent p.L202L 0.31 TCGA-TN-A7HL-01 16 21078642 21078642 C T DNAH3 Silent p.L1160L 0.19 TCGA-TN-A7HL-01 16 21151926 21151926 G A DNAH3 Silent p.L209L 0.26 TCGA-TN-A7HL-01 16 28975269 28975269 G A NFATC2IP 3'UTR 0.29 TCGA-TN-A7HL-01 16 28992821 28992821 C T SPNS1 Silent p.L232L 0.22 TCGA-TN-A7HL-01 16 29858706 29858706 G A MVP Silent p.Q818Q 0.30 TCGA-TN-A7HL-01 16 30081230 30081230 G A ALDOA Silent p.L347L 0.25 TCGA-TN-A7HL-01 16 30721294 30721294 G A SRCAP Missense_Mutation p.E327K 0.31 unknown(0) TCGA-TN-A7HL-01 16 30899219 30899219 G C BCL7C Silent p.L207L 0.28 TCGA-TN-A7HL-01 16 31500498 31500498 C T SLC5A2 Missense_Mutation p.P502S 0.10 tolerated(0.24) benign(0.091) TCGA-TN-A7HL-01 16 31500538 31500538 C T SLC5A2 Missense_Mutation p.S515L 0.22 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HL-01 16 3254586 3254586 C T OR1F1 Missense_Mutation p.L114F 0.17 deleterious(0.02) benign(0.417) TCGA-TN-A7HL-01 16 3551038 3551038 C T CLUAP1 5'UTR 0.12 TCGA-TN-A7HL-01 16 3611708 3611708 C G NLRC3 Missense_Mutation p.K717N 0.19 tolerated(0.05) benign(0.213) TCGA-TN-A7HL-01 16 3641259 3641259 C T SLX4 Missense_Mutation p.D794N 0.19 deleterious(0.05) possibly_damaging(0.907) TCGA-TN-A7HL-01 16 3786674 3786674 C T CREBBP Missense_Mutation p.E1513K 0.13 unknown(0) TCGA-TN-A7HL-01 16 3789610 3789610 A G CREBBP Missense_Mutation p.Y1417H 0.40 unknown(0) TCGA-TN-A7HL-01 16 48333616 48333616 G A LONP2 Silent p.L526L 0.19 TCGA-TN-A7HL-01 16 56782220 56782220 G C NUP93 Missense_Mutation p.E21Q 0.18 tolerated(0.3) benign(0.332) TCGA-TN-A7HL-01 16 57485028 57485028 G C COQ9 Missense_Mutation p.Q50H 0.30 tolerated(0.15) benign(0.003) TCGA-TN-A7HL-01 16 67291449 67291449 C G SLC9A5 Missense_Mutation p.L481V 0.31 deleterious(0) benign(0.338) TCGA-TN-A7HL-01 16 67293492 67293492 C T SLC9A5 Missense_Mutation p.S548F 0.28 deleterious(0.04) possibly_damaging(0.529) TCGA-TN-A7HL-01 16 67293509 67293509 C T SLC9A5 Silent p.L554L 0.20 TCGA-TN-A7HL-01 16 70415582 70415582 G A ST3GAL2 3'UTR 0.20 TCGA-TN-A7HL-01 16 84065570 84065570 G A SLC38A8 Silent p.I178I 0.11 TCGA-TN-A7HL-01 16 85112592 85112592 G A KIAA0513 Silent p.L295L 0.21 TCGA-TN-A7HL-01 16 855560 855560 C G PRR25 Missense_Mutation p.R40G 0.16 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-TN-A7HL-01 16 855650 855650 C G PRR25 Missense_Mutation p.H70D 0.19 deleterious_low_confidence(0) benign(0.006) TCGA-TN-A7HL-01 16 88653065 88653065 C T ZC3H18 Missense_Mutation p.R221C 0.26 deleterious_low_confidence(0) unknown(0) TCGA-TN-A7HL-01 16 8875228 8875228 G A ABAT Missense_Mutation p.D482N 0.18 tolerated(0.2) benign(0.004) TCGA-TN-A7HL-01 16 89590511 89590511 C T SPG7 Silent p.L158L 0.33 TCGA-TN-A7HL-01 16 90109574 90109574 C G GAS8 Intron 0.23 TCGA-TN-A7HL-01 17 10590123 10590123 C G SCO1 Missense_Mutation p.R231T 0.27 tolerated(0.08) benign(0.014) TCGA-TN-A7HL-01 17 12016649 12016649 G A MAP2K4 Missense_Mutation p.R262K 0.33 tolerated(0.65) possibly_damaging(0.766) TCGA-TN-A7HL-01 17 15554855 15554855 G C RP11-385D13.1 Silent p.L23L 0.35 TCGA-TN-A7HL-01 17 27049700 27049700 G C RPL23A Intron 0.21 TCGA-TN-A7HL-01 17 29220658 29220658 C T ATAD5 Missense_Mutation p.S1596L 0.17 tolerated(0.32) benign(0.001) TCGA-TN-A7HL-01 17 35872423 35872423 C G DUSP14 Missense_Mutation p.R17G 0.22 tolerated(0.39) benign(0.011) TCGA-TN-A7HL-01 17 37431248 37431248 G A FBXL20 Silent p.L268L 0.21 TCGA-TN-A7HL-01 17 38289863 38289863 C T MSL1 Nonsense_Mutation p.Q282* 0.26 TCGA-TN-A7HL-01 17 38636972 38636972 G T TNS4 Missense_Mutation p.S574Y 0.19 deleterious(0.01) possibly_damaging(0.823) TCGA-TN-A7HL-01 17 38638442 38638442 G A TNS4 Silent p.F537F 0.13 TCGA-TN-A7HL-01 17 39092585 39092585 G A KRT23 Missense_Mutation p.R91C 0.17 deleterious(0) probably_damaging(0.976) TCGA-TN-A7HL-01 17 40052893 40052893 G C ACLY Missense_Mutation p.P480R 0.24 tolerated(0.4) benign(0.015) TCGA-TN-A7HL-01 17 40282382 40282382 G A RAB5C Missense_Mutation p.H80Y 0.19 tolerated(0.41) benign(0.027) TCGA-TN-A7HL-01 17 40970304 40970304 C G BECN1 Missense_Mutation p.K206N 0.27 tolerated(0.24) benign(0.112) TCGA-TN-A7HL-01 17 41131266 41131266 G A PTGES3L-AARSD1 Missense_Mutation p.S113F 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.791) TCGA-TN-A7HL-01 17 45198318 45198318 C T CDC27 Missense_Mutation p.E826K 0.33 deleterious(0.01) possibly_damaging(0.642) TCGA-TN-A7HL-01 17 45419396 45419396 G A EFCAB13 Missense_Mutation p.E101K 0.18 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HL-01 17 45886706 45886706 G A OSBPL7 Silent p.F673F 0.21 TCGA-TN-A7HL-01 17 46000473 46000473 C G SP2 Nonsense_Mutation p.S402* 0.25 TCGA-TN-A7HL-01 17 46674031 46674031 G A HOXB6 Missense_Mutation p.S140F 0.22 tolerated(0.08) possibly_damaging(0.733) TCGA-TN-A7HL-01 17 48627670 48627670 C G SPATA20 Missense_Mutation p.F365L 0.21 deleterious(0.01) benign(0.198) TCGA-TN-A7HL-01 17 48628248 48628248 C G SPATA20 Silent p.L451L 0.21 TCGA-TN-A7HL-01 17 54526483 54526483 G C ANKFN1 Missense_Mutation p.Q384H 0.13 tolerated(0.59) benign(0) TCGA-TN-A7HL-01 17 5485350 5485350 G A NLRP1 Missense_Mutation p.P161S 0.39 tolerated(0.27) benign(0.002) TCGA-TN-A7HL-01 17 58121317 58121317 C A HEATR6 Missense_Mutation p.Q1051H 0.24 deleterious(0) possibly_damaging(0.783) TCGA-TN-A7HL-01 17 60525120 60525120 C T METTL2A Silent p.F325F 0.20 TCGA-TN-A7HL-01 17 6371598 6371598 G A PITPNM3 Missense_Mutation p.P613S 0.27 deleterious(0.01) possibly_damaging(0.585) TCGA-TN-A7HL-01 17 66429704 66429704 G A WIPI1 Silent p.I235I 0.21 TCGA-TN-A7HL-01 17 73258704 73258704 G A MRPS7 Silent p.K70K 0.23 TCGA-TN-A7HL-01 17 74527641 74527641 G A CYGB Silent p.V92V 0.19 TCGA-TN-A7HL-01 17 74527688 74527688 G A CYGB Nonsense_Mutation p.Q77* 0.11 TCGA-TN-A7HL-01 17 74625778 74625778 C T ST6GALNAC1 Silent p.E49E 0.20 TCGA-TN-A7HL-01 17 74732510 74732510 C T SRSF2 Silent p.R133R 0.38 TCGA-TN-A7HL-01 17 7474754 7474754 C T SENP3 Missense_Mutation p.R560C 0.28 deleterious(0) probably_damaging(0.991) TCGA-TN-A7HL-01 17 76060974 76060974 G A TNRC6C Missense_Mutation p.G853E 0.16 deleterious(0.01) possibly_damaging(0.839) TCGA-TN-A7HL-01 17 77768657 77768657 G C CBX8 Missense_Mutation p.S316C 0.34 deleterious(0.01) possibly_damaging(0.7) TCGA-TN-A7HL-01 17 80059353 80059353 G A FASN 5'Flank 0.50 TCGA-TN-A7HL-01 17 80790247 80790247 G C ZNF750 Missense_Mutation p.F28L 0.49 deleterious(0) probably_damaging(0.994) TCGA-TN-A7HL-01 17 80790248 80790248 A T ZNF750 Missense_Mutation p.F28Y 0.49 deleterious(0) probably_damaging(0.995) TCGA-TN-A7HL-01 18 13068894 13068894 C T CEP192 Silent p.I1622I 0.26 TCGA-TN-A7HL-01 18 19996130 19996130 C T CTAGE1 Missense_Mutation p.D549N 0.25 tolerated(0.1) benign(0.382) TCGA-TN-A7HL-01 18 19997264 19997264 C T CTAGE1 Missense_Mutation p.E171K 0.22 tolerated(0.15) benign(0.16) TCGA-TN-A7HL-01 18 20581637 20581637 C T RBBP8 Silent p.F744F 0.20 TCGA-TN-A7HL-01 18 29116340 29116340 C G DSG2 Silent p.V533V 0.27 TCGA-TN-A7HL-01 18 32953515 32953515 G A ZNF396 Missense_Mutation p.S156L 0.31 tolerated(1) benign(0.029) TCGA-TN-A7HL-01 18 33573241 33573241 C T RPRD1A Missense_Mutation p.R271K 0.16 tolerated(1) benign(0.002) TCGA-TN-A7HL-01 18 33706814 33706814 G A SLC39A6 Missense_Mutation p.R53W 0.07 deleterious(0) possibly_damaging(0.487) TCGA-TN-A7HL-01 18 33739932 33739932 G A ELP2 Missense_Mutation p.E613K 0.12 deleterious(0) possibly_damaging(0.858) TCGA-TN-A7HL-01 18 70417497 70417497 G A NETO1 Silent p.L447L 0.37 TCGA-TN-A7HL-01 18 72250822 72250822 C G CNDP1 Missense_Mutation p.I445M 0.16 deleterious(0.03) possibly_damaging(0.768) TCGA-TN-A7HL-01 18 9522465 9522465 G C RALBP1 Missense_Mutation p.M337I 0.26 deleterious(0.03) probably_damaging(1) TCGA-TN-A7HL-01 19 11144825 11144825 G C SMARCA4 Missense_Mutation p.E1300D 0.23 probably_damaging(0.992) TCGA-TN-A7HL-01 19 11144856 11144856 G A SMARCA4 Missense_Mutation p.E1311K 0.20 possibly_damaging(0.777) TCGA-TN-A7HL-01 19 12244368 12244368 G C ZNF20 Silent p.L211L 0.18 TCGA-TN-A7HL-01 19 12575067 12575067 C T ZNF709 Missense_Mutation p.E557K 0.15 deleterious(0.05) probably_damaging(0.987) TCGA-TN-A7HL-01 19 12575149 12575149 C T ZNF709 Silent p.E529E 0.18 TCGA-TN-A7HL-01 19 12984814 12984814 G C MAST1 Silent p.A1281A 0.43 TCGA-TN-A7HL-01 19 14041235 14041235 G A CC2D1A 3'UTR 0.15 TCGA-TN-A7HL-01 19 14521829 14521829 G A DDX39A Silent p.D195D 0.13 TCGA-TN-A7HL-01 19 14591135 14591135 C T GIPC1 Missense_Mutation p.E213K 0.39 deleterious(0) probably_damaging(0.985) TCGA-TN-A7HL-01 19 1582649 1582649 C T MBD3 Silent p.K157K 0.14 TCGA-TN-A7HL-01 19 1585201 1585201 C A MBD3 Missense_Mutation p.K41N 0.33 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 19 16613927 16613927 G A C19orf44 Missense_Mutation p.A271T 0.06 tolerated(0.17) benign(0.048) TCGA-TN-A7HL-01 19 17664289 17664289 C T FAM129C Nonsense_Mutation p.Q671* 0.20 TCGA-TN-A7HL-01 19 17664432 17664432 C G FAM129C 3'UTR 0.42 TCGA-TN-A7HL-01 19 18331312 18331312 C T PDE4C Silent p.Q203Q 0.12 TCGA-TN-A7HL-01 19 1990034 1990034 G A BTBD2 Silent p.F319F 0.11 TCGA-TN-A7HL-01 19 20807837 20807837 C T ZNF626 Silent p.K282K 0.34 TCGA-TN-A7HL-01 19 21991152 21991152 C G ZNF43 Missense_Mutation p.E563Q 0.29 deleterious(0.01) possibly_damaging(0.584) TCGA-TN-A7HL-01 19 2214013 2214013 C T DOT1L Intron 0.19 TCGA-TN-A7HL-01 19 2340962 2340962 C G SPPL2B RNA 0.23 TCGA-TN-A7HL-01 19 2438403 2438403 G A LMNB2 Silent p.D176D 0.12 TCGA-TN-A7HL-01 19 3151812 3151812 C T GNA15 Missense_Mutation p.S198F 0.15 deleterious(0.01) possibly_damaging(0.839) TCGA-TN-A7HL-01 19 3179392 3179392 C G S1PR4 Missense_Mutation p.S201C 0.14 deleterious(0) probably_damaging(0.941) TCGA-TN-A7HL-01 19 34791776 34791776 C T KIAA0355 Missense_Mutation p.S133L 0.25 deleterious_low_confidence(0.03) benign(0.086) TCGA-TN-A7HL-01 19 36035831 36035831 C G GAPDHS Silent p.L359L 0.22 TCGA-TN-A7HL-01 19 37117137 37117137 G A ZNF382 Missense_Mutation p.R113K 0.24 tolerated(0.43) benign(0.001) TCGA-TN-A7HL-01 19 37678011 37678011 G A ZNF585B Missense_Mutation p.S143L 0.22 tolerated(0.09) benign(0.004) TCGA-TN-A7HL-01 19 37904385 37904385 G A ZNF569 Missense_Mutation p.S392F 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-TN-A7HL-01 19 39759480 39759480 G C IFNL2 Missense_Mutation p.K58N 0.23 deleterious(0.02) possibly_damaging(0.87) TCGA-TN-A7HL-01 19 39882005 39882005 G A MED29 Silent p.L2L 0.30 TCGA-TN-A7HL-01 19 40739702 40739702 C G AKT2 3'UTR 0.38 TCGA-TN-A7HL-01 19 42489172 42489172 G A ATP1A3 Silent p.F310F 0.36 TCGA-TN-A7HL-01 19 42847735 42847735 G C MEGF8 Missense_Mutation p.L540F 0.26 deleterious(0.01) benign(0.215) TCGA-TN-A7HL-01 19 45491406 45491406 C G CLPTM1 Silent p.V369V 0.19 TCGA-TN-A7HL-01 19 45735089 45735089 C G EXOC3L2 Missense_Mutation p.E8Q 0.20 tolerated(0.49) benign(0.11) TCGA-TN-A7HL-01 19 46811510 46811510 C T HIF3A Silent p.F132F 0.25 TCGA-TN-A7HL-01 19 46857086 46857086 G T PPP5C Missense_Mutation p.R68L 0.25 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 19 46914652 46914652 C T CCDC8 Silent p.R472R 0.25 TCGA-TN-A7HL-01 19 46914864 46914864 C G CCDC8 Missense_Mutation p.E402Q 0.18 possibly_damaging(0.711) TCGA-TN-A7HL-01 19 47424871 47424871 C T ARHGAP35 Missense_Mutation p.S980L 0.23 tolerated(0.59) benign(0.101) TCGA-TN-A7HL-01 19 48220235 48220235 C T EHD2 Silent p.F122F 0.20 TCGA-TN-A7HL-01 19 48305262 48305262 G A TPRX1 Nonsense_Mutation p.Q336* 0.20 TCGA-TN-A7HL-01 19 49920332 49920332 G C CCDC155 Missense_Mutation p.E479Q 0.17 tolerated_low_confidence(0.13) benign(0.035) TCGA-TN-A7HL-01 19 50093804 50093804 C T PRRG2 3'UTR 0.32 TCGA-TN-A7HL-01 19 50962508 50962508 G T MYBPC2 Silent p.L912L 0.19 TCGA-TN-A7HL-01 19 50962509 50962509 A T MYBPC2 Missense_Mutation p.S913C 0.20 tolerated(0.08) benign(0.065) TCGA-TN-A7HL-01 19 57325390 57325390 C T PEG3 Missense_Mutation p.E1474K 0.23 deleterious(0.01) probably_damaging(0.931) TCGA-TN-A7HL-01 19 57641576 57641576 G A USP29 Silent p.L511L 0.22 TCGA-TN-A7HL-01 19 57967615 57967615 C T VN1R1 Silent p.L80L 0.18 TCGA-TN-A7HL-01 19 58199002 58199002 G A ZNF551 Silent p.G453G 0.29 TCGA-TN-A7HL-01 19 58578450 58578450 G C ZNF135 Missense_Mutation p.D224H 0.13 tolerated(0.22) benign(0.004) TCGA-TN-A7HL-01 19 6185518 6185518 G C ACSBG2 Missense_Mutation p.C465S 0.18 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 19 6735686 6735686 C A GPR108 Missense_Mutation p.Q107H 0.13 deleterious(0.03) benign(0.005) TCGA-TN-A7HL-01 19 7267738 7267738 G A INSR Silent p.L90L 0.12 TCGA-TN-A7HL-01 19 7833978 7833978 G C CLEC4M 3'UTR 0.24 TCGA-TN-A7HL-01 19 8203089 8203089 T A FBN3 Silent p.R379R 0.19 TCGA-TN-A7HL-01 19 8564664 8564664 C G PRAM1 Missense_Mutation p.E10Q 0.19 tolerated_low_confidence(0.22) benign(0.293) TCGA-TN-A7HL-01 19 9071607 9071607 G A MUC16 Missense_Mutation p.S5280L 0.48 unknown(0) TCGA-TN-A7HL-01 19 9086117 9086117 C T MUC16 Missense_Mutation p.E1900K 0.25 unknown(0) TCGA-TN-A7HL-01 1 10041193 10041193 C G NMNAT1 Missense_Mutation p.S135C 0.30 tolerated(0.21) benign(0.01) TCGA-TN-A7HL-01 1 109793608 109793608 G T CELSR2 Nonsense_Mutation p.E303* 0.23 TCGA-TN-A7HL-01 1 109812412 109812412 C T CELSR2 Silent p.F2359F 0.24 TCGA-TN-A7HL-01 1 109869745 109869745 A G SORT1 Silent p.D504D 0.20 TCGA-TN-A7HL-01 1 11133993 11133993 C G EXOSC10 Missense_Mutation p.E719Q 0.29 tolerated(0.12) probably_damaging(0.999) TCGA-TN-A7HL-01 1 11288856 11288856 G A MTOR Missense_Mutation p.H967Y 0.35 tolerated(0.28) possibly_damaging(0.757) TCGA-TN-A7HL-01 1 116234068 116234068 G C VANGL1 3'UTR 0.40 TCGA-TN-A7HL-01 1 117602966 117602966 G A TTF2 5'UTR 0.22 TCGA-TN-A7HL-01 1 118165963 118165963 C T FAM46C Missense_Mutation p.S158F 0.20 deleterious(0.03) probably_damaging(0.959) TCGA-TN-A7HL-01 1 11863497 11863497 G A MTHFR 5'Flank 0.17 TCGA-TN-A7HL-01 1 120479962 120479962 G A NOTCH2 Silent p.S1155S 0.22 TCGA-TN-A7HL-01 1 12381972 12381972 C T VPS13D Missense_Mutation p.S2552L 0.20 benign(0.168) TCGA-TN-A7HL-01 1 12885076 12885076 G A PRAMEF11 Silent p.F345F 0.20 TCGA-TN-A7HL-01 1 145273251 145273251 G A NOTCH2NL Silent p.Q35Q 0.06 TCGA-TN-A7HL-01 1 149859143 149859143 G C HIST2H2AB Silent p.V108V 0.15 TCGA-TN-A7HL-01 1 150241120 150241120 G A APH1A Missense_Mutation p.R31C 0.25 deleterious(0) possibly_damaging(0.84) TCGA-TN-A7HL-01 1 150305455 150305455 G C PRPF3 Missense_Mutation p.K171N 0.08 tolerated(0.48) benign(0.014) TCGA-TN-A7HL-01 1 150529266 150529266 C G ADAMTSL4 Silent p.V582V 0.23 TCGA-TN-A7HL-01 1 150551607 150551607 G A MCL1 Missense_Mutation p.L134F 0.35 tolerated(0.07) possibly_damaging(0.83) TCGA-TN-A7HL-01 1 151239649 151239649 G A PSMD4 Missense_Mutation p.E322K 0.23 tolerated(0.14) benign(0.022) TCGA-TN-A7HL-01 1 151400332 151400332 G C POGZ Missense_Mutation p.Q349E 0.21 tolerated(0.53) possibly_damaging(0.766) TCGA-TN-A7HL-01 1 154947273 154947273 G C CKS1B Missense_Mutation p.E18Q 0.22 deleterious(0.01) possibly_damaging(0.706) TCGA-TN-A7HL-01 1 155018687 155018687 G A DCST1 Missense_Mutation p.M453I 0.13 tolerated(0.13) benign(0.013) TCGA-TN-A7HL-01 1 155019772 155019772 G A DCST1 Missense_Mutation p.M532I 0.19 tolerated(0.67) benign(0.004) TCGA-TN-A7HL-01 1 155210955 155210955 G A GBA 5'UTR 0.25 TCGA-TN-A7HL-01 1 155226027 155226027 C T SCAMP3 3'UTR 0.27 TCGA-TN-A7HL-01 1 155226122 155226122 C T SCAMP3 Missense_Mutation p.R329Q 0.21 tolerated(1) unknown(0) TCGA-TN-A7HL-01 1 155531963 155531963 G A ASH1L 5'UTR 0.23 TCGA-TN-A7HL-01 1 156721214 156721214 C T HDGF Intron 0.19 TCGA-TN-A7HL-01 1 157557328 157557328 C T FCRL4 Silent p.L195L 0.29 TCGA-TN-A7HL-01 1 158064506 158064506 G C KIRREL Missense_Mutation p.D624H 0.15 deleterious(0.02) possibly_damaging(0.577) TCGA-TN-A7HL-01 1 159558079 159558079 G C APCS Missense_Mutation p.E85Q 0.24 tolerated(0.29) possibly_damaging(0.706) TCGA-TN-A7HL-01 1 159906269 159906269 C G IGSF9 Missense_Mutation p.R198P 0.24 deleterious(0) possibly_damaging(0.64) TCGA-TN-A7HL-01 1 16259289 16259289 C A SPEN Missense_Mutation p.S2185Y 0.23 possibly_damaging(0.613) TCGA-TN-A7HL-01 1 16260136 16260136 C T SPEN Silent p.I2467I 0.15 TCGA-TN-A7HL-01 1 16260202 16260202 C G SPEN Missense_Mutation p.I2489M 0.24 benign(0.11) TCGA-TN-A7HL-01 1 16260241 16260241 C G SPEN Missense_Mutation p.I2502M 0.26 benign(0.372) TCGA-TN-A7HL-01 1 16378708 16378708 C T CLCNKB Missense_Mutation p.S475L 0.13 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 1 16534240 16534240 C G ARHGEF19 Missense_Mutation p.E243Q 0.16 tolerated_low_confidence(0.1) benign(0.179) TCGA-TN-A7HL-01 1 167852773 167852773 C T ADCY10 Missense_Mutation p.E308K 0.22 tolerated(0.5) possibly_damaging(0.842) TCGA-TN-A7HL-01 1 169776935 169776935 G T C1orf112 Missense_Mutation p.Q189H 0.21 deleterious(0.02) probably_damaging(0.979) TCGA-TN-A7HL-01 1 172013590 172013590 C T DNM3 Silent p.I398I 0.22 TCGA-TN-A7HL-01 1 173155697 173155697 C G TNFSF4 Silent p.L170L 0.16 TCGA-TN-A7HL-01 1 17371253 17371253 C T SDHB Intron 0.15 TCGA-TN-A7HL-01 1 17371298 17371298 C G SDHB Missense_Mutation p.G53A 0.13 tolerated(0.18) benign(0.225) TCGA-TN-A7HL-01 1 177249839 177249839 G A BRINP2 Silent p.L509L 0.31 TCGA-TN-A7HL-01 1 179520354 179520354 G A NPHS2 Missense_Mutation p.P369L 0.28 tolerated(0.15) benign(0.003) TCGA-TN-A7HL-01 1 186088921 186088921 C T HMCN1 Silent p.L4001L 0.24 TCGA-TN-A7HL-01 1 196794654 196794654 G T CFHR1 Nonsense_Mutation p.E36* 0.29 TCGA-TN-A7HL-01 1 200635852 200635852 G A DDX59 Missense_Mutation p.S6F 0.24 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-TN-A7HL-01 1 201868762 201868762 C T LMOD1 Missense_Mutation p.R460Q 0.23 probably_damaging(0.997) TCGA-TN-A7HL-01 1 201868902 201868902 C T LMOD1 Silent p.Q413Q 0.14 TCGA-TN-A7HL-01 1 202464798 202464798 C G PPP1R12B Missense_Mutation p.F812L 0.16 tolerated(0.09) probably_damaging(0.963) TCGA-TN-A7HL-01 1 20982228 20982228 C T DDOST Missense_Mutation p.D150N 0.26 deleterious(0) probably_damaging(0.995) TCGA-TN-A7HL-01 1 21042076 21042076 C T KIF17 Silent p.G96G 0.13 TCGA-TN-A7HL-01 1 213415086 213415086 C T RPS6KC1 Missense_Mutation p.S756F 0.23 tolerated(0.71) benign(0.001) TCGA-TN-A7HL-01 1 232943324 232943324 C G MAP10 Missense_Mutation p.S852C 0.26 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 1 234553865 234553865 G C TARBP1 Missense_Mutation p.Q1224E 0.18 tolerated(0.15) benign(0.015) TCGA-TN-A7HL-01 1 235915397 235915397 C T LYST Missense_Mutation p.C2512Y 0.05 deleterious(0.02) probably_damaging(0.994) TCGA-TN-A7HL-01 1 246727680 246727680 C T TFB2M Missense_Mutation p.E124K 0.16 deleterious(0) probably_damaging(0.989) TCGA-TN-A7HL-01 1 248028093 248028093 G A TRIM58 Silent p.L201L 0.26 TCGA-TN-A7HL-01 1 27190297 27190297 C T SFN Silent p.F198F 0.22 TCGA-TN-A7HL-01 1 27676949 27676949 G A SYTL1 Silent p.L326L 0.22 TCGA-TN-A7HL-01 1 29638032 29638032 C T PTPRU Silent p.I984I 0.19 TCGA-TN-A7HL-01 1 34088974 34088974 G C CSMD2 Missense_Mutation p.F1866L 0.25 deleterious(0.05) benign(0.261) TCGA-TN-A7HL-01 1 3683959 3683959 C T CCDC27 Nonsense_Mutation p.Q565* 0.16 TCGA-TN-A7HL-01 1 38331545 38331545 G A INPP5B Missense_Mutation p.S801F 0.09 deleterious(0) probably_damaging(0.947) TCGA-TN-A7HL-01 1 38453301 38453301 C T SF3A3 Missense_Mutation p.E83K 0.21 tolerated(0.07) possibly_damaging(0.741) TCGA-TN-A7HL-01 1 39800377 39800377 C T MACF1 Intron 0.32 TCGA-TN-A7HL-01 1 40723960 40723960 C T ZMPSTE24 Missense_Mutation p.S6L 0.23 tolerated_low_confidence(0.13) benign(0.001) TCGA-TN-A7HL-01 1 41486213 41486213 G A SLFNL1 Silent p.L40L 0.26 TCGA-TN-A7HL-01 1 42914180 42914180 C G ZMYND12 Missense_Mutation p.E128Q 0.33 tolerated(0.6) benign(0.139) TCGA-TN-A7HL-01 1 44443586 44443586 C T ATP6V0B Intron 0.23 TCGA-TN-A7HL-01 1 45266614 45266614 G C PLK3 Missense_Mutation p.E105Q 0.16 deleterious(0.04) probably_damaging(0.943) TCGA-TN-A7HL-01 1 45851629 45851629 G T TESK2 Missense_Mutation p.F116L 0.20 deleterious(0.05) possibly_damaging(0.838) TCGA-TN-A7HL-01 1 47283805 47283805 C G CYP4B1 Silent p.V425V 0.18 TCGA-TN-A7HL-01 1 47614436 47614436 C G CYP4A22 Silent p.L509L 0.35 TCGA-TN-A7HL-01 1 54618586 54618586 C G CDCP2 Missense_Mutation p.E4Q 0.20 tolerated_low_confidence(0.06) possibly_damaging(0.727) TCGA-TN-A7HL-01 1 54618631 54618631 C T CDCP2 5'UTR 0.35 TCGA-TN-A7HL-01 1 54618646 54618646 C T CDCP2 5'UTR 0.36 TCGA-TN-A7HL-01 1 54618682 54618682 G A CDCP2 5'UTR 0.35 TCGA-TN-A7HL-01 1 55064966 55064966 C T ACOT11 Intron 0.19 TCGA-TN-A7HL-01 1 55075609 55075609 C G FAM151A Missense_Mutation p.E364Q 0.27 tolerated(0.12) possibly_damaging(0.795) TCGA-TN-A7HL-01 1 55139799 55139799 C G MROH7 Silent p.L637L 0.25 TCGA-TN-A7HL-01 1 6214862 6214862 G C CHD5 Missense_Mutation p.F201L 0.21 tolerated(0.23) benign(0.008) TCGA-TN-A7HL-01 1 62740699 62740699 G A KANK4 Missense_Mutation p.S26F 0.21 deleterious(0) possibly_damaging(0.863) TCGA-TN-A7HL-01 1 67507963 67507963 G A SLC35D1 Silent p.L229L 0.20 TCGA-TN-A7HL-01 1 70587515 70587515 T G LRRC7 Missense_Mutation p.L1520R 0.20 deleterious(0) probably_damaging(0.925) TCGA-TN-A7HL-01 1 75038215 75038215 C T C1orf173 Missense_Mutation p.R1060Q 0.18 deleterious(0.04) benign(0.313) TCGA-TN-A7HL-01 1 76260321 76260321 G A RABGGTB Missense_Mutation p.E328K 0.20 tolerated(0.28) benign(0.002) TCGA-TN-A7HL-01 1 7796589 7796589 C T CAMTA1 Silent p.L1084L 0.21 TCGA-TN-A7HL-01 1 89729433 89729433 G A GBP5 Missense_Mutation p.R450W 0.18 deleterious(0.01) possibly_damaging(0.574) TCGA-TN-A7HL-01 1 90178346 90178346 C G LRRC8C Missense_Mutation p.Q73E 0.18 tolerated(1) benign(0.002) TCGA-TN-A7HL-01 1 90178613 90178613 C T LRRC8C Silent p.L162L 0.19 TCGA-TN-A7HL-01 1 90178873 90178873 C T LRRC8C Silent p.F248F 0.21 TCGA-TN-A7HL-01 1 90180458 90180458 C T LRRC8C Silent p.L777L 0.30 TCGA-TN-A7HL-01 1 90180639 90180639 C A LRRC8C 3'UTR 0.36 TCGA-TN-A7HL-01 1 94506902 94506902 G T ABCA4 Missense_Mutation p.R1129S 0.12 deleterious(0.01) possibly_damaging(0.868) TCGA-TN-A7HL-01 1 94671233 94671233 C T ARHGAP29 Missense_Mutation p.E173K 0.18 deleterious(0) probably_damaging(0.993) TCGA-TN-A7HL-01 1 948877 948877 G A ISG15 5'UTR 0.39 TCGA-TN-A7HL-01 1 949534 949534 C T ISG15 Silent p.V58V 0.27 TCGA-TN-A7HL-01 1 95538323 95538323 C G ALG14 Silent p.G44G 0.21 TCGA-TN-A7HL-01 1 9992908 9992908 G C LZIC Missense_Mutation p.Q129E 0.28 tolerated(0.39) benign(0.01) TCGA-TN-A7HL-01 20 11899749 11899749 C T BTBD3 Silent p.F114F 0.18 TCGA-TN-A7HL-01 20 13371100 13371100 C T TASP1 Splice_Site p.X391_splice 0.12 TCGA-TN-A7HL-01 20 13740396 13740396 C G ESF1 Missense_Mutation p.E591Q 0.21 tolerated(0.05) probably_damaging(0.922) TCGA-TN-A7HL-01 20 1438876 1438876 C G NSFL1C Missense_Mutation p.D83H 0.14 deleterious(0.02) possibly_damaging(0.632) TCGA-TN-A7HL-01 20 15967446 15967446 G T MACROD2 Nonsense_Mutation p.E354* 0.24 TCGA-TN-A7HL-01 20 17417514 17417514 G A PCSK2 Missense_Mutation p.D291N 0.21 tolerated(0.43) benign(0.215) TCGA-TN-A7HL-01 20 17932200 17932200 C T SNX5 Missense_Mutation p.G185S 0.13 tolerated(0.24) probably_damaging(0.938) TCGA-TN-A7HL-01 20 23966319 23966319 C G GGTLC1 Missense_Mutation p.E172D 0.10 deleterious(0.02) possibly_damaging(0.85) TCGA-TN-A7HL-01 20 30227812 30227812 C G COX4I2 Missense_Mutation p.F53L 0.49 deleterious(0.02) possibly_damaging(0.755) TCGA-TN-A7HL-01 20 30898122 30898122 C A KIF3B Missense_Mutation p.S181Y 0.08 deleterious(0) benign(0.342) TCGA-TN-A7HL-01 20 3145084 3145084 C T LZTS3 3'UTR 0.06 TCGA-TN-A7HL-01 20 33331002 33331002 G A NCOA6 Nonsense_Mutation p.Q1020* 0.16 TCGA-TN-A7HL-01 20 34806809 34806809 C T EPB41L1 Silent p.L760L 0.12 TCGA-TN-A7HL-01 20 3557510 3557510 C G ATRN Missense_Mutation p.S740C 0.21 deleterious(0.02) benign(0.232) TCGA-TN-A7HL-01 20 35743606 35743606 C G MROH8 Missense_Mutation p.M862I 0.20 tolerated(0.27) benign(0.002) TCGA-TN-A7HL-01 20 35743704 35743704 C G MROH8 Missense_Mutation p.D830H 0.26 deleterious(0.01) possibly_damaging(0.853) TCGA-TN-A7HL-01 20 35766276 35766276 G A MROH8 Missense_Mutation p.S556F 0.19 deleterious(0) probably_damaging(0.996) TCGA-TN-A7HL-01 20 35838545 35838545 G C RPN2 Missense_Mutation p.Q321H 0.28 tolerated(0.06) benign(0.012) TCGA-TN-A7HL-01 20 35857006 35857006 C T RPN2 Silent p.A451A 0.23 TCGA-TN-A7HL-01 20 3766555 3766555 G A CENPB Silent p.F192F 0.20 TCGA-TN-A7HL-01 20 3766568 3766568 G A CENPB Missense_Mutation p.S188L 0.20 deleterious(0.05) unknown(0) TCGA-TN-A7HL-01 20 3766589 3766589 G A CENPB Missense_Mutation p.S181L 0.12 tolerated(0.21) unknown(0) TCGA-TN-A7HL-01 20 39317034 39317034 C G MAFB Missense_Mutation p.D153H 0.32 deleterious(0.05) benign(0.308) TCGA-TN-A7HL-01 20 39791089 39791089 C T PLCG1 Intron 0.23 TCGA-TN-A7HL-01 20 40828010 40828010 C G PTPRT Missense_Mutation p.Q787H 0.25 tolerated(0.11) possibly_damaging(0.556) TCGA-TN-A7HL-01 20 44699104 44699104 C T NCOA5 Missense_Mutation p.R37K 0.04 deleterious_low_confidence(0) unknown(0) TCGA-TN-A7HL-01 20 46311796 46311796 C G SULF2 Missense_Mutation p.E336Q 0.39 tolerated(0.06) probably_damaging(0.991) TCGA-TN-A7HL-01 20 52198540 52198540 G A ZNF217 Missense_Mutation p.H276Y 0.19 tolerated(1) benign(0.002) TCGA-TN-A7HL-01 20 57769308 57769308 C T ZNF831 Silent p.L1078L 0.17 TCGA-TN-A7HL-01 20 61288183 61288183 C G SLCO4A1 Missense_Mutation p.T126R 0.16 deleterious(0) probably_damaging(0.996) TCGA-TN-A7HL-01 20 61299845 61299845 C T SLCO4A1 Nonsense_Mutation p.Q610* 0.27 TCGA-TN-A7HL-01 20 61513653 61513653 G A DIDO1 Nonsense_Mutation p.Q1219* 0.21 TCGA-TN-A7HL-01 20 62729471 62729471 C T OPRL1 Missense_Mutation p.P184S 0.20 tolerated(0.09) probably_damaging(0.993) TCGA-TN-A7HL-01 20 869080 869080 G A ANGPT4 Silent p.L156L 0.19 TCGA-TN-A7HL-01 20 948705 948705 C A RSPO4 Missense_Mutation p.Q52H 0.20 tolerated(0.35) benign(0.011) TCGA-TN-A7HL-01 21 11015007 11015007 G C TPTE RNA 0.16 TCGA-TN-A7HL-01 21 30414333 30414333 G C USP16 Splice_Site p.X344_splice 0.13 TCGA-TN-A7HL-01 21 31587582 31587582 C T CLDN8 Missense_Mutation p.R221K 0.22 tolerated(1) benign(0.001) TCGA-TN-A7HL-01 21 44152179 44152179 G C PDE9A Splice_Site p.X148_splice 0.17 TCGA-TN-A7HL-01 22 17446136 17446136 C G GAB4 Silent p.L437L 0.25 TCGA-TN-A7HL-01 22 20796566 20796566 C T KLHL22 Missense_Mutation p.D567N 0.25 tolerated(0.13) benign(0.082) TCGA-TN-A7HL-01 22 22162014 22162014 C T MAPK1 Missense_Mutation p.E81K 0.22 deleterious(0) probably_damaging(0.995) TCGA-TN-A7HL-01 22 24837220 24837220 C T ADORA2A Silent p.V334V 0.17 TCGA-TN-A7HL-01 22 25023940 25023940 C T GGT1 Nonsense_Mutation p.Q444* 0.24 TCGA-TN-A7HL-01 22 25294145 25294145 G C SGSM1 Silent p.R798R 0.12 TCGA-TN-A7HL-01 22 29834886 29834886 G A RFPL1 Missense_Mutation p.E36K 0.29 tolerated(0.19) benign(0.084) TCGA-TN-A7HL-01 22 32239777 32239777 C G DEPDC5 Missense_Mutation p.S918C 0.26 deleterious(0) benign(0.012) TCGA-TN-A7HL-01 22 35729424 35729424 G A TOM1 Missense_Mutation p.D321N 0.29 tolerated(0.82) benign(0.007) TCGA-TN-A7HL-01 22 39358513 39358513 G A APOBEC3A Silent p.%3D 0.10 TCGA-TN-A7HL-01 22 40037145 40037145 C G CACNA1I Missense_Mutation p.I338M 0.15 deleterious(0) probably_damaging(0.995) TCGA-TN-A7HL-01 22 43026976 43026976 G A CYB5R3 Missense_Mutation p.S115L 0.13 tolerated(0.24) possibly_damaging(0.877) TCGA-TN-A7HL-01 22 43606202 43606202 C T SCUBE1 Missense_Mutation p.E810K 0.11 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 22 45719278 45719278 C T FAM118A Silent p.V90V 0.26 TCGA-TN-A7HL-01 22 46931067 46931067 C T CELSR1 Missense_Mutation p.M667I 0.13 deleterious(0.01) probably_damaging(0.938) TCGA-TN-A7HL-01 22 50278454 50278454 G A ZBED4 Missense_Mutation p.E382K 0.21 deleterious_low_confidence(0.05) benign(0.219) TCGA-TN-A7HL-01 22 50903084 50903084 G A SBF1 Silent p.F505F 0.12 TCGA-TN-A7HL-01 22 50928244 50928244 G A MIOX Missense_Mutation p.G273R 0.21 deleterious(0.03) benign(0.065) TCGA-TN-A7HL-01 2 108998900 108998900 C T SULT1C4 Missense_Mutation p.H119Y 0.22 deleterious(0.03) benign(0.029) TCGA-TN-A7HL-01 2 109398721 109398721 G A RANBP2 Silent p.K2966K 0.22 TCGA-TN-A7HL-01 2 11355687 11355687 G C ROCK2 Missense_Mutation p.Q516E 0.17 deleterious(0.02) possibly_damaging(0.803) TCGA-TN-A7HL-01 2 114257758 114257758 G T FOXD4L1 Nonsense_Mutation p.E309* 0.30 TCGA-TN-A7HL-01 2 128414994 128414994 C A LIMS2 Nonsense_Mutation p.E76* 0.30 TCGA-TN-A7HL-01 2 128757382 128757382 A G SAP130 Silent p.I408I 0.26 TCGA-TN-A7HL-01 2 131487611 131487611 C G GPR148 Missense_Mutation p.T296S 0.22 tolerated(0.32) benign(0.076) TCGA-TN-A7HL-01 2 131976140 131976140 G T POTEE Missense_Mutation p.K55N 0.26 deleterious_low_confidence(0) benign(0.403) TCGA-TN-A7HL-01 2 141641478 141641478 G A LRP1B Silent p.I1359I 0.22 TCGA-TN-A7HL-01 2 153475613 153475613 C A FMNL2 Nonsense_Mutation p.S523* 0.30 TCGA-TN-A7HL-01 2 157182274 157182274 C T NR4A2 Silent p.L593L 0.23 TCGA-TN-A7HL-01 2 158443739 158443739 G A ACVR1C Silent p.F88F 0.18 TCGA-TN-A7HL-01 2 159195173 159195173 G A CCDC148 Intron 0.25 TCGA-TN-A7HL-01 2 159672323 159672323 G A DAPL1 Missense_Mutation p.R105Q 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-TN-A7HL-01 2 162751237 162751237 T G SLC4A10 Missense_Mutation p.S415A 0.27 tolerated(1) benign(0.002) TCGA-TN-A7HL-01 2 178095961 178095961 T C NFE2L2 Missense_Mutation p.D457G 0.25 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 2 179325777 179325777 G A DFNB59 Missense_Mutation p.D279N 0.16 deleterious(0.01) benign(0.212) TCGA-TN-A7HL-01 2 179429972 179429972 C T TTN Missense_Mutation p.E26963K 0.16 TCGA-TN-A7HL-01 2 179641970 179641970 C T TTN Missense_Mutation p.E1574K 0.21 TCGA-TN-A7HL-01 2 179642083 179642083 G A TTN Intron 0.09 TCGA-TN-A7HL-01 2 182786990 182786990 G C SSFA2 Missense_Mutation p.E1176Q 0.16 deleterious(0.02) benign(0.043) TCGA-TN-A7HL-01 2 186671243 186671243 C T FSIP2 Missense_Mutation p.S5826L 0.28 benign(0.037) TCGA-TN-A7HL-01 2 191898712 191898712 G A STAT4 Missense_Mutation p.S547L 0.26 tolerated(0.07) benign(0.219) TCGA-TN-A7HL-01 2 192228948 192228948 C T MYO1B Silent p.F326F 0.22 TCGA-TN-A7HL-01 2 19552946 19552946 G A OSR1 Silent p.I207I 0.41 TCGA-TN-A7HL-01 2 197708715 197708715 C T PGAP1 Missense_Mutation p.D808N 0.22 tolerated(0.33) benign(0.003) TCGA-TN-A7HL-01 2 202671425 202671425 G C CDK15 Missense_Mutation p.G13A 0.32 tolerated_low_confidence(0.06) benign(0.325) TCGA-TN-A7HL-01 2 213291085 213291085 G C ERBB4 Intron 0.26 TCGA-TN-A7HL-01 2 215013944 215013944 C T SPAG16 Silent p.I558I 0.14 TCGA-TN-A7HL-01 2 216279464 216279464 C T FN1 Intron 0.36 TCGA-TN-A7HL-01 2 219878634 219878634 C G CCDC108 Silent p.G1245G 0.21 TCGA-TN-A7HL-01 2 220032949 220032949 G C SLC23A3 Missense_Mutation p.H264D 0.22 tolerated(0.14) benign(0.003) TCGA-TN-A7HL-01 2 220247868 220247868 G C DNPEP Silent p.L307L 0.31 TCGA-TN-A7HL-01 2 225729338 225729338 C G DOCK10 Missense_Mutation p.E512Q 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-TN-A7HL-01 2 227886817 227886817 C G COL4A4 Missense_Mutation p.R1388T 0.22 unknown(0) TCGA-TN-A7HL-01 2 228855743 228855743 C T SPHKAP Silent p.K1644K 0.12 TCGA-TN-A7HL-01 2 228890197 228890197 C G SPHKAP Missense_Mutation p.M118I 0.21 tolerated(0.08) benign(0.341) TCGA-TN-A7HL-01 2 232393418 232393418 G A NMUR1 Missense_Mutation p.S105L 0.26 deleterious(0) probably_damaging(0.924) TCGA-TN-A7HL-01 2 233393663 233393663 G A CHRND Missense_Mutation p.D201N 0.28 deleterious(0) probably_damaging(0.927) TCGA-TN-A7HL-01 2 233671332 233671332 C T GIGYF2 Missense_Mutation p.P612S 0.30 probably_damaging(0.998) TCGA-TN-A7HL-01 2 234407258 234407258 C T USP40 Missense_Mutation p.G895E 0.14 deleterious(0) probably_damaging(0.954) TCGA-TN-A7HL-01 2 234621862 234621862 C T UGT1A5 Silent p.F75F 0.19 TCGA-TN-A7HL-01 2 235950877 235950877 C G SH3BP4 Missense_Mutation p.F488L 0.27 deleterious(0.02) possibly_damaging(0.777) TCGA-TN-A7HL-01 2 238287348 238287348 G T COL6A3 Missense_Mutation p.Q810K 0.24 probably_damaging(0.973) TCGA-TN-A7HL-01 2 241500919 241500919 C T DUSP28 3'UTR 0.16 TCGA-TN-A7HL-01 2 242168950 242168950 G C HDLBP 3'UTR 0.17 TCGA-TN-A7HL-01 2 242170210 242170210 G A HDLBP Silent p.R1146R 0.26 TCGA-TN-A7HL-01 2 242433534 242433534 G C FARP2 Missense_Mutation p.E1053D 0.15 tolerated_low_confidence(0.15) benign(0.011) TCGA-TN-A7HL-01 2 26647185 26647185 G C DRC1 Missense_Mutation p.D135H 0.20 deleterious(0) benign(0.41) TCGA-TN-A7HL-01 2 27306410 27306410 C G EMILIN1 Silent p.L657L 0.21 TCGA-TN-A7HL-01 2 27861751 27861751 G C GPN1 Splice_Site p.X205_splice 0.16 TCGA-TN-A7HL-01 2 31154959 31154959 C T GALNT14 Missense_Mutation p.D350N 0.24 tolerated(0.27) benign(0.05) TCGA-TN-A7HL-01 2 48573479 48573479 G A FOXN2 Silent p.P42P 0.21 TCGA-TN-A7HL-01 2 60688318 60688318 C T BCL11A Missense_Mutation p.E577K 0.37 tolerated(0.77) benign(0.247) TCGA-TN-A7HL-01 2 61324832 61324832 C T KIAA1841 Intron 0.17 TCGA-TN-A7HL-01 2 71305524 71305524 G A NAGK Silent p.L353L 0.24 TCGA-TN-A7HL-01 2 73718100 73718100 C T ALMS1 Missense_Mutation p.S3004L 0.26 benign(0.015) TCGA-TN-A7HL-01 2 74491407 74491407 C A SLC4A5 Missense_Mutation p.Q194H 0.24 tolerated(0.08) probably_damaging(1) TCGA-TN-A7HL-01 2 79363990 79363990 A T REG1P RNA 0.20 TCGA-TN-A7HL-01 2 85892750 85892750 C T SFTPB Silent p.A199A 0.33 TCGA-TN-A7HL-01 2 9580747 9580747 G A CPSF3 Silent p.Q296Q 0.17 TCGA-TN-A7HL-01 2 96591150 96591150 G C ANKRD36C 3'Flank 0.18 TCGA-TN-A7HL-01 3 10452365 10452365 C G ATP2B2 Missense_Mutation p.E112Q 0.19 tolerated(0.2) probably_damaging(0.996) TCGA-TN-A7HL-01 3 105586266 105586266 G C CBLB Silent p.L52L 0.17 TCGA-TN-A7HL-01 3 108476045 108476045 C G RETNLB 5'UTR 0.27 TCGA-TN-A7HL-01 3 112184868 112184868 G A BTLA 3'UTR 0.13 TCGA-TN-A7HL-01 3 113729643 113729643 C T KIAA1407 Silent p.V463V 0.17 TCGA-TN-A7HL-01 3 113850160 113850160 C T DRD3 Missense_Mutation p.E271K 0.14 tolerated(0.34) benign(0.096) TCGA-TN-A7HL-01 3 121206364 121206364 G A POLQ Missense_Mutation p.S1805L 0.22 deleterious(0.03) possibly_damaging(0.616) TCGA-TN-A7HL-01 3 121725931 121725931 C T ILDR1 Missense_Mutation p.D46N 0.14 deleterious(0) probably_damaging(0.989) TCGA-TN-A7HL-01 3 122842924 122842924 G A PDIA5 Silent p.G207G 0.14 TCGA-TN-A7HL-01 3 126740945 126740945 G A PLXNA1 Silent p.E1352E 0.25 TCGA-TN-A7HL-01 3 128532282 128532282 G C RAB7A 3'UTR 0.18 TCGA-TN-A7HL-01 3 128758660 128758660 C T EFCC1 Missense_Mutation p.A589V 0.15 tolerated(0.16) possibly_damaging(0.525) TCGA-TN-A7HL-01 3 129370616 129370616 G A TMCC1 Missense_Mutation p.T557M 0.17 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 3 132433961 132433961 C T NPHP3 Missense_Mutation p.E309K 0.19 deleterious(0.03) possibly_damaging(0.678) TCGA-TN-A7HL-01 3 134197399 134197399 G C ANAPC13 3'UTR 0.21 TCGA-TN-A7HL-01 3 136141363 136141363 G A STAG1 Silent p.I642I 0.14 TCGA-TN-A7HL-01 3 142499837 142499837 G A TRPC1 Missense_Mutation p.R309H 0.24 deleterious(0) probably_damaging(0.996) TCGA-TN-A7HL-01 3 145914535 145914535 C T PLSCR4 Missense_Mutation p.E224K 0.19 deleterious(0) possibly_damaging(0.825) TCGA-TN-A7HL-01 3 148614436 148614436 G A CPA3 Missense_Mutation p.R399K 0.41 tolerated(0.79) benign(0.001) TCGA-TN-A7HL-01 3 148857940 148857940 G A HPS3 Missense_Mutation p.D123N 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-TN-A7HL-01 3 148858056 148858056 G A HPS3 Silent p.L161L 0.18 TCGA-TN-A7HL-01 3 154138881 154138881 C G GPR149 Missense_Mutation p.D524H 0.16 deleterious(0.03) benign(0.033) TCGA-TN-A7HL-01 3 167016198 167016198 G A ZBBX Nonsense_Mutation p.Q592* 0.33 TCGA-TN-A7HL-01 3 167413412 167413412 C T PDCD10 Missense_Mutation p.D123N 0.16 tolerated(0.07) benign(0.188) TCGA-TN-A7HL-01 3 175520802 175520802 C G NAALADL2 Silent p.L733L 0.16 TCGA-TN-A7HL-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.31 deleterious(0.04) probably_damaging(0.96) TCGA-TN-A7HL-01 3 179050801 179050801 C G ZNF639 Nonsense_Mutation p.S65* 0.36 TCGA-TN-A7HL-01 3 183479317 183479317 C A YEATS2 Missense_Mutation p.S560Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.646) TCGA-TN-A7HL-01 3 187416365 187416365 C T RTP2 Missense_Mutation p.R200H 0.09 deleterious(0.04) possibly_damaging(0.776) TCGA-TN-A7HL-01 3 193082049 193082049 G C ATP13A5 Missense_Mutation p.D28E 0.04 deleterious(0.02) benign(0.05) TCGA-TN-A7HL-01 3 19322798 19322798 T C KCNH8 Missense_Mutation p.I140T 0.26 tolerated(0.69) benign(0.034) TCGA-TN-A7HL-01 3 196737593 196737593 G A MFI2 Missense_Mutation p.P436S 0.13 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 3 196771544 196771544 C T DLG1 Missense_Mutation p.E911K 0.19 tolerated(0.11) possibly_damaging(0.459) TCGA-TN-A7HL-01 3 23934657 23934657 G C NKIRAS1 Missense_Mutation p.Q170E 0.21 tolerated(0.29) possibly_damaging(0.908) TCGA-TN-A7HL-01 3 27758815 27758815 C T EOMES Missense_Mutation p.D603N 0.17 tolerated(0.08) probably_damaging(0.962) TCGA-TN-A7HL-01 3 36873775 36873775 G A TRANK1 Silent p.F2389F 0.27 TCGA-TN-A7HL-01 3 38287675 38287675 C A OXSR1 Missense_Mutation p.S407Y 0.15 deleterious(0.01) benign(0.212) TCGA-TN-A7HL-01 3 44489429 44489429 G A ZNF445 Silent p.L578L 0.28 TCGA-TN-A7HL-01 3 46449886 46449886 C T CCRL2 Missense_Mutation p.L118F 0.21 tolerated(0.13) benign(0.394) TCGA-TN-A7HL-01 3 49395180 49395180 C G GPX1 Missense_Mutation p.E85Q 0.07 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 3 49395253 49395253 G T GPX1 Intron 0.16 TCGA-TN-A7HL-01 3 49397790 49397790 C G RHOA Missense_Mutation p.R145T 0.28 tolerated(0.15) benign(0.301) TCGA-TN-A7HL-01 3 49885617 49885617 C G TRAIP Missense_Mutation p.E39Q 0.24 tolerated(0.6) benign(0.091) TCGA-TN-A7HL-01 3 50603157 50603157 G A C3orf18 5'UTR 0.21 TCGA-TN-A7HL-01 3 52823859 52823859 G A ITIH1 Silent p.L770L 0.30 TCGA-TN-A7HL-01 3 62063842 62063842 G A PTPRG Silent p.Q175Q 0.20 TCGA-TN-A7HL-01 3 62254739 62254739 G T PTPRG Missense_Mutation p.E968D 0.15 tolerated(0.35) possibly_damaging(0.544) TCGA-TN-A7HL-01 3 70014452 70014452 G C MITF 3'UTR 0.14 TCGA-TN-A7HL-01 3 98568334 98568334 A G DCBLD2 Missense_Mutation p.L181S 0.18 deleterious(0) probably_damaging(0.923) TCGA-TN-A7HL-01 4 100479319 100479319 G A TRMT10A Nonsense_Mutation p.Q79* 0.20 TCGA-TN-A7HL-01 4 107092323 107092323 C G TBCK Missense_Mutation p.D722H 0.28 deleterious(0.03) benign(0.01) TCGA-TN-A7HL-01 4 113189560 113189560 C T AP1AR Nonsense_Mutation p.R302* 0.19 TCGA-TN-A7HL-01 4 113352354 113352354 C T ALPK1 Nonsense_Mutation p.Q551* 0.28 TCGA-TN-A7HL-01 4 123542073 123542073 G A IL21 Nonsense_Mutation p.Q32* 0.27 TCGA-TN-A7HL-01 4 134073076 134073076 C T PCDH10 Missense_Mutation p.A594V 0.21 tolerated(0.21) possibly_damaging(0.683) TCGA-TN-A7HL-01 4 144457757 144457757 C T SMARCA5 Missense_Mutation p.T474I 0.19 deleterious(0) benign(0.374) TCGA-TN-A7HL-01 4 15964242 15964242 C G FGFBP2 Missense_Mutation p.E171Q 0.17 tolerated(0.13) benign(0.098) TCGA-TN-A7HL-01 4 15964323 15964323 C G FGFBP2 Missense_Mutation p.E144Q 0.18 tolerated(0.41) benign(0.026) TCGA-TN-A7HL-01 4 170663146 170663146 C A C4orf27 Nonsense_Mutation p.E204* 0.11 TCGA-TN-A7HL-01 4 170663224 170663224 C T C4orf27 Missense_Mutation p.D178N 0.16 tolerated(0.19) benign(0.097) TCGA-TN-A7HL-01 4 170983104 170983104 G C AADAT Nonsense_Mutation p.S392* 0.19 TCGA-TN-A7HL-01 4 1806119 1806119 G A FGFR3 Missense_Mutation p.G382R 0.21 tolerated(0.14) probably_damaging(0.925) TCGA-TN-A7HL-01 4 185309983 185309983 C T IRF2 Missense_Mutation p.D327N 0.25 tolerated(0.39) benign(0.1) TCGA-TN-A7HL-01 4 20530631 20530631 G A SLIT2 Missense_Mutation p.E508K 0.14 tolerated(0.35) probably_damaging(0.995) TCGA-TN-A7HL-01 4 24550530 24550530 C T DHX15 Missense_Mutation p.R399H 0.18 deleterious(0) probably_damaging(0.96) TCGA-TN-A7HL-01 4 25363538 25363538 C T ZCCHC4 Missense_Mutation p.P357S 0.12 deleterious(0.04) possibly_damaging(0.857) TCGA-TN-A7HL-01 4 3240619 3240619 C T HTT Silent p.F3043F 0.26 TCGA-TN-A7HL-01 4 3427279 3427279 G C RGS12 Missense_Mutation p.R1108T 0.19 tolerated(0.17) benign(0.357) TCGA-TN-A7HL-01 4 38051364 38051364 G A TBC1D1 Silent p.S585S 0.17 TCGA-TN-A7HL-01 4 38690408 38690408 C G KLF3 Nonsense_Mutation p.S87* 0.23 TCGA-TN-A7HL-01 4 38800263 38800263 C T TLR1 Missense_Mutation p.D64N 0.17 deleterious(0.02) benign(0.072) TCGA-TN-A7HL-01 4 40439927 40439927 C T RBM47 Silent p.Q328Q 0.22 TCGA-TN-A7HL-01 4 42457368 42457368 C A ATP8A1 Missense_Mutation p.L921F 0.25 tolerated(0.07) benign(0.42) TCGA-TN-A7HL-01 4 54967927 54967927 G C GSX2 Missense_Mutation p.Q251H 0.18 deleterious(0) probably_damaging(0.996) TCGA-TN-A7HL-01 4 56759928 56759928 G C EXOC1 Missense_Mutation p.R645S 0.18 deleterious(0) benign(0.326) TCGA-TN-A7HL-01 4 69683801 69683801 G A UGT2B10 Missense_Mutation p.R258Q 0.20 deleterious(0.03) possibly_damaging(0.474) TCGA-TN-A7HL-01 4 71024498 71024498 G A C4orf40 Missense_Mutation p.E177K 0.27 tolerated(0.55) unknown(0) TCGA-TN-A7HL-01 4 74010539 74010539 G C ANKRD17 Missense_Mutation p.S627C 0.22 probably_damaging(0.999) TCGA-TN-A7HL-01 4 74274350 74274350 C G ALB Missense_Mutation p.L104V 0.16 deleterious(0.01) benign(0.223) TCGA-TN-A7HL-01 4 77053825 77053825 G C NUP54 Nonsense_Mutation p.S253* 0.22 TCGA-TN-A7HL-01 4 77941766 77941766 G A SEPT11 Missense_Mutation p.R299H 0.12 deleterious(0.04) benign(0.26) TCGA-TN-A7HL-01 4 78663422 78663422 G C CNOT6L Missense_Mutation p.L249V 0.11 deleterious(0.01) benign(0.314) TCGA-TN-A7HL-01 4 7870384 7870384 G C AFAP1 Missense_Mutation p.Q64E 0.22 tolerated(0.64) probably_damaging(0.974) TCGA-TN-A7HL-01 4 79351553 79351553 C T FRAS1 Nonsense_Mutation p.R1651* 0.23 TCGA-TN-A7HL-01 4 8229622 8229622 C G SH3TC1 Nonsense_Mutation p.S734* 0.21 TCGA-TN-A7HL-01 4 84383664 84383664 C G FAM175A Missense_Mutation p.K396N 0.23 tolerated_low_confidence(0.14) benign(0.033) TCGA-TN-A7HL-01 4 90857467 90857467 C A MMRN1 Nonsense_Mutation p.S879* 0.11 TCGA-TN-A7HL-01 4 90874647 90874647 C T MMRN1 3'UTR 0.20 TCGA-TN-A7HL-01 4 96046263 96046263 C G BMPR1B Silent p.L222L 0.15 TCGA-TN-A7HL-01 5 102472513 102472513 C T PPIP5K2 Missense_Mutation p.L130F 0.15 tolerated(0.7) benign(0.003) TCGA-TN-A7HL-01 5 108290552 108290552 G C FER Missense_Mutation p.E484D 0.15 deleterious(0) probably_damaging(0.951) TCGA-TN-A7HL-01 5 11346497 11346497 G A CTNND2 Nonsense_Mutation p.Q539* 0.16 TCGA-TN-A7HL-01 5 1219654 1219654 C T SLC6A19 Silent p.F471F 0.31 TCGA-TN-A7HL-01 5 140031308 140031308 C T IK Silent p.L31L 0.07 TCGA-TN-A7HL-01 5 140482100 140482100 G A PCDHB3 Missense_Mutation p.E623K 0.29 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-TN-A7HL-01 5 140810366 140810366 G C PCDHGA12 Missense_Mutation p.V14L 0.28 tolerated_low_confidence(0.27) benign(0.009) TCGA-TN-A7HL-01 5 14291174 14291174 C G TRIO Nonsense_Mutation p.S297* 0.17 TCGA-TN-A7HL-01 5 145493842 145493842 C T LARS Missense_Mutation p.D1120N 0.24 tolerated(0.09) possibly_damaging(0.456) TCGA-TN-A7HL-01 5 145552278 145552278 C T LARS Missense_Mutation p.G62E 0.17 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 5 145834750 145834750 G A TCERG1 Missense_Mutation p.R64Q 0.17 tolerated_low_confidence(0.4) benign(0.238) TCGA-TN-A7HL-01 5 1463930 1463930 C T LPCAT1 Missense_Mutation p.E481K 0.20 tolerated(0.81) benign(0.049) TCGA-TN-A7HL-01 5 147443598 147443598 C T SPINK5 5'UTR 0.22 TCGA-TN-A7HL-01 5 148389898 148389898 C T SH3TC2 Missense_Mutation p.E1088K 0.21 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 5 149277943 149277943 C T PDE6A Missense_Mutation p.E464K 0.22 deleterious(0.02) probably_damaging(0.971) TCGA-TN-A7HL-01 5 169446073 169446073 G C DOCK2 Missense_Mutation p.M1114I 0.23 deleterious(0) possibly_damaging(0.656) TCGA-TN-A7HL-01 5 176684087 176684087 G A NSD1 Missense_Mutation p.R1634Q 0.24 deleterious(0) probably_damaging(0.961) TCGA-TN-A7HL-01 5 179546440 179546440 C G RASGEF1C Missense_Mutation p.K271N 0.13 deleterious(0.03) possibly_damaging(0.702) TCGA-TN-A7HL-01 5 36955632 36955632 C G NIPBL Silent p.L41L 0.17 TCGA-TN-A7HL-01 5 37379491 37379491 G A WDR70 Missense_Mutation p.E8K 0.23 tolerated_low_confidence(0.85) benign(0.002) TCGA-TN-A7HL-01 5 37697950 37697950 T C WDR70 Intron 0.24 TCGA-TN-A7HL-01 5 38991175 38991175 C T RICTOR Missense_Mutation p.M153I 0.24 tolerated(0.94) benign(0.023) TCGA-TN-A7HL-01 5 40762911 40762911 C G PRKAA1 Missense_Mutation p.C565S 0.22 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 5 40979964 40979964 C T C7 Missense_Mutation p.S768L 0.18 tolerated(0.29) benign(0.001) TCGA-TN-A7HL-01 5 41160462 41160462 G T C6 Missense_Mutation p.P489H 0.19 deleterious(0) probably_damaging(0.992) TCGA-TN-A7HL-01 5 52096179 52096179 G A PELO 5'UTR 0.29 TCGA-TN-A7HL-01 5 53839208 53839208 C A SNX18 Missense_Mutation p.F607L 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-TN-A7HL-01 5 5463612 5463612 G A KIAA0947 Missense_Mutation p.E1389K 0.32 tolerated(0.29) benign(0.341) TCGA-TN-A7HL-01 5 64960478 64960478 G C TRAPPC13 3'UTR 0.36 TCGA-TN-A7HL-01 5 74721288 74721288 C G COL4A3BP Missense_Mutation p.E293Q 0.27 deleterious(0.02) possibly_damaging(0.668) TCGA-TN-A7HL-01 5 76264639 76264639 C T CRHBP Nonsense_Mutation p.Q300* 0.21 TCGA-TN-A7HL-01 5 7867058 7867058 C G FASTKD3 Missense_Mutation p.R380T 0.25 tolerated(0.06) benign(0.032) TCGA-TN-A7HL-01 5 79027795 79027795 C A CMYA5 Missense_Mutation p.F1069L 0.26 benign(0.013) TCGA-TN-A7HL-01 5 80555067 80555067 C A CKMT2 Silent p.L336L 0.15 TCGA-TN-A7HL-01 5 96315345 96315345 C G LNPEP Missense_Mutation p.L175V 0.24 tolerated(0.48) benign(0.032) TCGA-TN-A7HL-01 6 10411939 10411939 C G TFAP2A Intron 0.47 TCGA-TN-A7HL-01 6 109315691 109315691 C G SESN1 Missense_Mutation p.R365T 0.23 tolerated(0.89) benign(0.023) TCGA-TN-A7HL-01 6 109415189 109415189 G C SESN1 Missense_Mutation p.Q30E 0.20 tolerated(0.08) benign(0.101) TCGA-TN-A7HL-01 6 111689121 111689121 G A REV3L Missense_Mutation p.S1957L 0.20 tolerated(0.12) benign(0.022) TCGA-TN-A7HL-01 6 117113562 117113562 C G GPRC6A Missense_Mutation p.E842Q 0.21 deleterious(0.01) possibly_damaging(0.796) TCGA-TN-A7HL-01 6 128176229 128176229 G A THEMIS Nonsense_Mutation p.Q66* 0.21 TCGA-TN-A7HL-01 6 15524633 15524633 G T DTNBP1 Intron 0.18 TCGA-TN-A7HL-01 6 160483568 160483568 C T IGF2R Missense_Mutation p.S1196L 0.21 deleterious(0) possibly_damaging(0.908) TCGA-TN-A7HL-01 6 17626393 17626393 G A NUP153 Nonsense_Mutation p.Q1183* 0.24 TCGA-TN-A7HL-01 6 17629246 17629246 G C NUP153 Missense_Mutation p.P1062A 0.23 tolerated(0.24) benign(0.047) TCGA-TN-A7HL-01 6 26251911 26251911 G A HIST1H2BH Silent p.P11P 0.22 TCGA-TN-A7HL-01 6 27799149 27799149 C T HIST1H4K Missense_Mutation p.E53K 0.16 tolerated(0.1) benign(0.122) TCGA-TN-A7HL-01 6 27860488 27860488 G A HIST1H2AM 3'UTR 0.26 TCGA-TN-A7HL-01 6 30043456 30043456 G C RNF39 Missense_Mutation p.I37M 0.21 tolerated_low_confidence(0.09) benign(0.102) TCGA-TN-A7HL-01 6 31701346 31701346 C T CLIC1 Missense_Mutation p.D127N 0.11 tolerated(0.06) benign(0.043) TCGA-TN-A7HL-01 6 31927109 31927109 C A SKIV2L Silent p.R20R 0.22 TCGA-TN-A7HL-01 6 32159206 32159206 C T GPSM3 Silent p.L140L 0.25 TCGA-TN-A7HL-01 6 32163523 32163523 C G NOTCH4 Silent p.S1901S 0.18 TCGA-TN-A7HL-01 6 33283442 33283442 G T ZBTB22 Missense_Mutation p.P418T 0.27 deleterious(0) probably_damaging(0.998) TCGA-TN-A7HL-01 6 33657052 33657052 G C ITPR3 Missense_Mutation p.W2244C 0.22 deleterious(0.01) probably_damaging(0.926) TCGA-TN-A7HL-01 6 35473538 35473538 C T TULP1 Silent p.E364E 0.26 TCGA-TN-A7HL-01 6 36946345 36946345 C T MTCH1 Missense_Mutation p.R150Q 0.21 deleterious(0.01) possibly_damaging(0.883) TCGA-TN-A7HL-01 6 42214269 42214269 C G TRERF1 Missense_Mutation p.W890C 0.09 deleterious(0) possibly_damaging(0.759) TCGA-TN-A7HL-01 6 51777273 51777273 C T PKHD1 Missense_Mutation p.E2075K 0.30 tolerated(0.13) benign(0.373) TCGA-TN-A7HL-01 6 56325006 56325006 G A DST Missense_Mutation p.S5059L 0.09 probably_damaging(0.999) TCGA-TN-A7HL-01 6 7583022 7583022 C G DSP Missense_Mutation p.L1843V 0.16 possibly_damaging(0.729) TCGA-TN-A7HL-01 6 84375259 84375259 G A SNAP91 Nonsense_Mutation p.Q58* 0.16 TCGA-TN-A7HL-01 6 91263225 91263225 C T MAP3K7 Missense_Mutation p.D230N 0.21 deleterious(0.02) benign(0.093) TCGA-TN-A7HL-01 6 97051478 97051478 G A FHL5 Intron 0.25 TCGA-TN-A7HL-01 7 100184172 100184172 C T FBXO24 5'Flank 0.21 TCGA-TN-A7HL-01 7 102937969 102937969 C T PMPCB Silent p.F21F 0.18 TCGA-TN-A7HL-01 7 103236934 103236934 C T RELN Missense_Mutation p.E1170K 0.23 deleterious(0) probably_damaging(0.993) TCGA-TN-A7HL-01 7 126173421 126173421 C T GRM8 Missense_Mutation p.R672H 0.20 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 7 126542666 126542666 G A GRM8 Silent p.F362F 0.14 TCGA-TN-A7HL-01 7 128138151 128138151 C T METTL2B Nonsense_Mutation p.R291* 0.25 TCGA-TN-A7HL-01 7 130138034 130138034 C T MEST Missense_Mutation p.R132W 0.14 tolerated(0.09) benign(0.005) TCGA-TN-A7HL-01 7 142573563 142573563 G A TRPV6 Missense_Mutation p.S286L 0.37 deleterious(0.05) benign(0.001) TCGA-TN-A7HL-01 7 155604655 155604655 C G SHH Missense_Mutation p.K54N 0.31 tolerated(0.39) probably_damaging(0.989) TCGA-TN-A7HL-01 7 157959963 157959963 C G PTPRN2 Missense_Mutation p.E190D 0.35 tolerated(1) benign(0) TCGA-TN-A7HL-01 7 21765447 21765447 G C DNAH11 Missense_Mutation p.D2436H 0.25 benign(0.008) TCGA-TN-A7HL-01 7 29727012 29727012 G A DPY19L2P3 RNA 0.14 TCGA-TN-A7HL-01 7 29983663 29983663 C G SCRN1 Silent p.L178L 0.23 TCGA-TN-A7HL-01 7 37956055 37956055 T C SFRP4 Missense_Mutation p.I29V 0.16 tolerated(0.12) possibly_damaging(0.853) TCGA-TN-A7HL-01 7 4917288 4917288 C G RADIL Missense_Mutation p.K161N 0.30 deleterious(0.03) probably_damaging(0.981) TCGA-TN-A7HL-01 7 51251897 51251897 C T COBL Splice_Site p.X229_splice 0.23 TCGA-TN-A7HL-01 7 53103896 53103896 C G POM121L12 Missense_Mutation p.L178V 0.24 tolerated(1) possibly_damaging(0.682) TCGA-TN-A7HL-01 7 56129470 56129470 C T CCT6A Nonsense_Mutation p.Q460* 0.17 TCGA-TN-A7HL-01 7 63727167 63727167 G A ZNF679 Missense_Mutation p.D386N 0.10 deleterious(0) benign(0.424) TCGA-TN-A7HL-01 7 66456190 66456190 C T SBDS Silent p.L186L 0.27 TCGA-TN-A7HL-01 7 72863971 72863971 T A BAZ1B Missense_Mutation p.H1210L 0.25 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 7 73118703 73118703 C A STX1A Missense_Mutation p.D112Y 0.13 deleterious(0.03) possibly_damaging(0.637) TCGA-TN-A7HL-01 7 75608783 75608783 C T POR Silent p.I84I 0.18 TCGA-TN-A7HL-01 7 76797037 76797037 G A CCDC146 Missense_Mutation p.E18K 0.09 tolerated_low_confidence(0.9) unknown(0) TCGA-TN-A7HL-01 7 76825626 76825626 C T FGL2 Missense_Mutation p.M430I 0.20 deleterious(0.05) possibly_damaging(0.768) TCGA-TN-A7HL-01 7 80418629 80418629 G A SEMA3C Silent p.L449L 0.22 TCGA-TN-A7HL-01 7 81593573 81593573 C A CACNA2D1 Nonsense_Mutation p.E893* 0.04 TCGA-TN-A7HL-01 7 83675760 83675760 C G SEMA3A Splice_Site p.X183_splice 0.22 TCGA-TN-A7HL-01 7 92099476 92099476 G T ERVW-1 Missense_Mutation p.H74N 0.27 tolerated(0.59) benign(0) TCGA-TN-A7HL-01 7 94230021 94230021 G A SGCE Missense_Mutation p.S325L 0.18 tolerated(1) benign(0.335) TCGA-TN-A7HL-01 7 98445624 98445624 G A TMEM130 3'UTR 0.33 TCGA-TN-A7HL-01 7 99708759 99708759 C G TAF6 Intron 0.27 TCGA-TN-A7HL-01 7 99722543 99722543 G A CNPY4 3'UTR 0.20 TCGA-TN-A7HL-01 7 99950686 99950686 C T PILRB 5'UTR 0.13 TCGA-TN-A7HL-01 7 99950869 99950869 C A PILRB 5'UTR 0.29 TCGA-TN-A7HL-01 8 110472020 110472020 G C PKHD1L1 Missense_Mutation p.E2401Q 0.15 deleterious(0.03) benign(0.439) TCGA-TN-A7HL-01 8 123963934 123963934 G C ZHX2 Missense_Mutation p.E62Q 0.22 tolerated(0.09) possibly_damaging(0.762) TCGA-TN-A7HL-01 8 131793005 131793005 C T ADCY8 Silent p.R1129R 0.21 TCGA-TN-A7HL-01 8 131826440 131826440 G A ADCY8 Nonsense_Mutation p.R930* 0.18 TCGA-TN-A7HL-01 8 134145740 134145740 C T TG Missense_Mutation p.S2675L 0.21 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 8 139707101 139707101 C A COL22A1 Nonsense_Mutation p.E872* 0.24 TCGA-TN-A7HL-01 8 16942798 16942798 G A MICU3 Missense_Mutation p.E250K 0.19 deleterious(0.02) benign(0.243) TCGA-TN-A7HL-01 8 17504494 17504494 G A MTUS1 Missense_Mutation p.S1199L 0.24 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 8 18080136 18080136 C G NAT1 Missense_Mutation p.L256V 0.15 deleterious(0) possibly_damaging(0.844) TCGA-TN-A7HL-01 8 28651377 28651377 G A INTS9 Silent p.F328F 0.19 TCGA-TN-A7HL-01 8 28651413 28651413 G A INTS9 Silent p.I316I 0.20 TCGA-TN-A7HL-01 8 30614307 30614307 C G UBXN8 RNA 0.29 TCGA-TN-A7HL-01 8 55540613 55540613 C G RP1 Missense_Mutation p.Q1391E 0.23 tolerated(0.11) benign(0.006) TCGA-TN-A7HL-01 8 56015561 56015561 C T XKR4 Silent p.F171F 0.31 TCGA-TN-A7HL-01 8 69017489 69017489 C G PREX2 Intron 0.18 TCGA-TN-A7HL-01 8 70551084 70551084 C T SULF1 Missense_Mutation p.L848F 0.23 tolerated_low_confidence(0.07) benign(0.434) TCGA-TN-A7HL-01 8 77617634 77617634 G C ZFHX4 Missense_Mutation p.E437D 0.26 benign(0.388) TCGA-TN-A7HL-01 8 79601465 79601465 C A ZC2HC1A Missense_Mutation p.Q121K 0.18 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 8 9567785 9567785 C G TNKS Intron 0.23 TCGA-TN-A7HL-01 9 100388016 100388016 G A TSTD2 Silent p.D143D 0.18 TCGA-TN-A7HL-01 9 100892109 100892109 C T CORO2A Missense_Mutation p.E312K 0.21 deleterious(0.02) probably_damaging(0.992) TCGA-TN-A7HL-01 9 104171998 104171998 C T ZNF189 3'UTR 0.26 TCGA-TN-A7HL-01 9 104238789 104238789 C G TMEM246 Missense_Mutation p.E196Q 0.22 tolerated(0.23) possibly_damaging(0.833) TCGA-TN-A7HL-01 9 111674550 111674550 C T IKBKAP Missense_Mutation p.D395N 0.31 tolerated(0.05) probably_damaging(0.96) TCGA-TN-A7HL-01 9 120475341 120475341 C T TLR4 Missense_Mutation p.S312L 0.24 tolerated(0.06) benign(0.049) TCGA-TN-A7HL-01 9 121929550 121929550 G C BRINP1 Missense_Mutation p.R700G 0.17 deleterious(0) probably_damaging(0.931) TCGA-TN-A7HL-01 9 123937392 123937392 G A CNTRL Missense_Mutation p.D2282N 0.20 probably_damaging(0.971) TCGA-TN-A7HL-01 9 131339775 131339775 G A SPTAN1 Missense_Mutation p.D359N 0.27 tolerated(0.47) benign(0.06) TCGA-TN-A7HL-01 9 13216801 13216801 C T MPDZ Missense_Mutation p.R421K 0.09 deleterious(0.01) probably_damaging(0.937) TCGA-TN-A7HL-01 9 135771804 135771804 C T TSC1 Missense_Mutation p.D1105N 0.26 deleterious(0) probably_damaging(0.999) TCGA-TN-A7HL-01 9 136199081 136199081 C T SURF6 Missense_Mutation p.R237Q 0.13 deleterious(0.01) possibly_damaging(0.857) TCGA-TN-A7HL-01 9 139292804 139292804 G A SNAPC4 Missense_Mutation p.S26L 0.26 deleterious(0.03) benign(0.028) TCGA-TN-A7HL-01 9 139396248 139396248 G A NOTCH1 Nonsense_Mutation p.Q1864* 0.56 TCGA-TN-A7HL-01 9 140329381 140329381 G A ENTPD8 Silent p.F491F 0.23 TCGA-TN-A7HL-01 9 15468728 15468728 C T PSIP1 Silent p.L440L 0.18 TCGA-TN-A7HL-01 9 15468961 15468961 C T PSIP1 Silent p.L400L 0.24 TCGA-TN-A7HL-01 9 15468978 15468978 C T PSIP1 Missense_Mutation p.E395K 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-TN-A7HL-01 9 17332671 17332671 G C CNTLN Missense_Mutation p.Q529H 0.25 deleterious(0.03) benign(0.008) TCGA-TN-A7HL-01 9 17332691 17332691 G A CNTLN Missense_Mutation p.R536K 0.27 tolerated(0.21) probably_damaging(0.986) TCGA-TN-A7HL-01 9 21201522 21201522 G C IFNA7 3'UTR 0.16 TCGA-TN-A7HL-01 9 2186186 2186186 G A SMARCA2 Missense_Mutation p.E1518K 0.08 unknown(0) TCGA-TN-A7HL-01 9 26905634 26905634 C T PLAA Missense_Mutation p.D755N 0.19 tolerated(0.52) benign(0.003) TCGA-TN-A7HL-01 9 26905734 26905734 C G PLAA Silent p.G721G 0.20 TCGA-TN-A7HL-01 9 4712788 4712788 C G AK3 3'UTR 0.76 TCGA-TN-A7HL-01 9 6013702 6013702 C T RANBP6 Missense_Mutation p.E636K 0.08 tolerated(0.18) benign(0.028) TCGA-TN-A7HL-01 9 67968269 67968269 C G ANKRD20A1 Missense_Mutation p.Q610E 0.22 tolerated(0.09) benign(0.217) TCGA-TN-A7HL-01 9 71152315 71152315 G C TMEM252 Missense_Mutation p.L125V 0.23 tolerated(0.44) benign(0.023) TCGA-TN-A7HL-01 9 79634744 79634744 G A FOXB2 Silent p.Q58Q 0.17 TCGA-TN-A7HL-01 9 84532813 84532813 C T SPATA31D5P RNA 0.24 TCGA-TN-A7HL-01 9 92003690 92003690 G A SEMA4D Missense_Mutation p.S323L 0.19 deleterious(0) probably_damaging(1) TCGA-TN-A7HL-01 9 96846792 96846792 C T PTPDC1 5'UTR 0.16 TCGA-TN-A7HL-01 9 97823003 97823003 C T C9orf3 Silent p.L715L 0.23 TCGA-TN-A7HL-01 9 98242255 98242255 C T PTCH1 Missense_Mutation p.V355I 0.26 tolerated(0.18) benign(0.002) TCGA-TN-A7HL-01 9 98728877 98728877 G A ERCC6L2 Missense_Mutation p.A672T 0.25 deleterious(0.04) possibly_damaging(0.87) TCGA-TN-A7HL-01 9 99700176 99700176 G A NUTM2G Missense_Mutation p.V445I 0.16 tolerated(0.09) benign(0.14) TCGA-TN-A7HL-01 X 100668237 100668237 G T HNRNPH2 Nonsense_Mutation p.G421* 0.50 TCGA-TN-A7HL-01 X 101396021 101396021 G A TCEAL6 Missense_Mutation p.R95W 0.39 tolerated(0.1) benign(0.03) TCGA-TN-A7HL-01 X 101909468 101909468 C G GPRASP1 Silent p.V209V 0.43 TCGA-TN-A7HL-01 X 107334967 107334967 C T ATG4A 5'UTR 0.65 TCGA-TN-A7HL-01 X 107977794 107977794 G C IRS4 Nonsense_Mutation p.S594* 0.42 TCGA-TN-A7HL-01 X 110644281 110644281 G C DCX Missense_Mutation p.I295M 0.40 deleterious(0.04) probably_damaging(0.982) TCGA-TN-A7HL-01 X 111019937 111019937 G C TRPC5 Silent p.L842L 0.43 TCGA-TN-A7HL-01 X 128885796 128885796 C T XPNPEP2 Missense_Mutation p.S272F 0.49 deleterious(0.02) benign(0.008) TCGA-TN-A7HL-01 X 135429620 135429620 C G GPR112 Missense_Mutation p.S1252C 0.47 deleterious(0) probably_damaging(0.963) TCGA-TN-A7HL-01 X 140984806 140984806 C - MAGEC3 Frame_Shift_Del p.P422Lfs*62 0.33 TCGA-TN-A7HL-01 X 150348595 150348595 C T GPR50 Silent p.F180F 0.51 TCGA-TN-A7HL-01 X 2873522 2873522 G A ARSE Missense_Mutation p.S81F 0.39 deleterious(0) possibly_damaging(0.765) TCGA-TN-A7HL-01 X 41205605 41205605 G C DDX3X Missense_Mutation p.R480T 0.42 deleterious(0) probably_damaging(0.985) TCGA-TN-A7HL-01 X 41205821 41205821 G C DDX3X Missense_Mutation p.D521H 0.36 deleterious(0) probably_damaging(0.997) TCGA-TN-A7HL-01 X 41379816 41379816 C G CASK Missense_Mutation p.D875H 0.37 deleterious(0.01) benign(0.356) TCGA-TN-A7HL-01 X 45010796 45010796 C T CXorf36 3'UTR 0.30 TCGA-TN-A7HL-01 X 47920202 47920202 G A ZNF630 Silent p.S46S 0.58 TCGA-TN-A7HL-01 X 48846043 48846043 C T GRIPAP1 Missense_Mutation p.E284K 0.48 possibly_damaging(0.858) TCGA-TN-A7HL-01 X 48846091 48846091 C T GRIPAP1 Missense_Mutation p.E268K 0.49 probably_damaging(0.995) TCGA-TN-A7HL-01 X 50165507 50165507 C T DGKK RNA 0.45 TCGA-TN-A7HL-01 X 50377158 50377158 G C SHROOM4 Missense_Mutation p.L639V 0.55 tolerated(0.74) benign(0.376) TCGA-TN-A7HL-01 X 50659224 50659224 A C BMP15 Missense_Mutation p.T266P 0.47 tolerated(0.08) benign(0.222) TCGA-TN-A7HL-01 X 69649731 69649731 C T GDPD2 Intron 0.48 TCGA-TN-A7HL-01 X 8433467 8433467 G A VCX3B 5'UTR 0.17 TCGA-TN-A7HL-01 X 90691441 90691441 G C PABPC5 Missense_Mutation p.E289Q 0.33 deleterious(0.02) possibly_damaging(0.638) TCGA-UF-A718-01 10 30915092 30915092 G A LYZL2 Silent p.F126F 0.26 TCGA-UF-A718-01 10 31815883 31815883 G C ZEB1 Silent p.S1023S 0.15 TCGA-UF-A718-01 12 53433969 53433969 G A EIF4B Missense_Mutation p.G600S 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-UF-A718-01 12 88530464 88530464 C T CEP290 Missense_Mutation p.D133N 0.19 benign(0.436) TCGA-UF-A718-01 13 103326700 103326700 C T TPP2 Missense_Mutation p.H1134Y 0.29 tolerated(1) benign(0.055) TCGA-UF-A718-01 13 37614572 37614572 T G SUPT20H Silent p.S179S 0.40 TCGA-UF-A718-01 14 105359984 105359984 G T CEP170B Missense_Mutation p.R1388L 0.31 deleterious(0) possibly_damaging(0.658) TCGA-UF-A718-01 14 75514995 75514995 T G MLH3 Missense_Mutation p.E455A 0.23 deleterious(0.03) benign(0.219) TCGA-UF-A718-01 15 50763967 50763967 G A USP8 Missense_Mutation p.R275Q 0.05 tolerated(1) benign(0.004) TCGA-UF-A718-01 15 75499309 75499310 - G C15orf39 Frame_Shift_Ins p.H310Pfs*75 0.30 TCGA-UF-A718-01 15 89002754 89002754 T C MRPL46 3'UTR 0.27 TCGA-UF-A718-01 16 11794371 11794371 C T TXNDC11 Silent p.A281A 0.27 TCGA-UF-A718-01 16 1453187 1453187 G A UNKL Missense_Mutation p.P149L 0.19 deleterious(0) benign(0.062) TCGA-UF-A718-01 16 27788942 27788942 C T KIAA0556 Silent p.D1521D 0.21 TCGA-UF-A718-01 16 29113381 29113381 A G RRN3P2 RNA 0.28 TCGA-UF-A718-01 16 628842 628842 C T PIGQ Missense_Mutation p.S376L 0.27 tolerated(0.08) benign(0.274) TCGA-UF-A718-01 16 72139420 72139420 C T DHX38 Missense_Mutation p.P795L 0.26 deleterious(0.03) possibly_damaging(0.643) TCGA-UF-A718-01 16 79245629 79245629 C A WWOX Missense_Mutation p.A394D 0.22 deleterious(0) probably_damaging(0.973) TCGA-UF-A718-01 16 80646698 80646698 G C CDYL2 Missense_Mutation p.P348R 0.13 deleterious(0) probably_damaging(1) TCGA-UF-A718-01 17 10317738 10317739 - A MYH8 Frame_Shift_Ins p.Y290Lfs*7 0.21 TCGA-UF-A718-01 17 40972837 40972837 C G BECN1 Missense_Mutation p.Q51H 0.19 tolerated(0.16) benign(0.054) TCGA-UF-A718-01 17 75199695 75199695 C G SEC14L1 Silent p.T351T 0.23 TCGA-UF-A718-01 17 7577609 7577609 C G TP53 Splice_Site p.X225_splice 0.52 TCGA-UF-A718-01 18 23714010 23714010 G T PSMA8 Silent p.A27A 0.23 TCGA-UF-A718-01 18 47088628 47088628 T G LIPG 5'UTR 0.29 TCGA-UF-A718-01 18 56118390 56118390 C G MIR122 RNA 0.12 TCGA-UF-A718-01 19 11113801 11113801 G A SMARCA4 Missense_Mutation p.G637R 0.27 probably_damaging(0.948) TCGA-UF-A718-01 19 15061028 15061028 T A SLC1A6 Silent p.G558G 0.31 TCGA-UF-A718-01 19 21991424 21991424 T A ZNF43 Missense_Mutation p.H472L 0.25 deleterious(0) probably_damaging(1) TCGA-UF-A718-01 19 36214636 36214636 G A KMT2B Missense_Mutation p.R1021Q 0.22 possibly_damaging(0.885) TCGA-UF-A718-01 19 39590903 39590903 G A PAPL Missense_Mutation p.R181H 0.22 tolerated(0.06) benign(0.12) TCGA-UF-A718-01 19 41895669 41895669 C A EXOSC5 Splice_Site p.X175_splice 0.23 TCGA-UF-A718-01 19 48737702 48737702 C T CARD8 Missense_Mutation p.R103H 0.18 tolerated(0.2) benign(0) TCGA-UF-A718-01 1 101456040 101456040 G A DPH5 Missense_Mutation p.P261L 0.21 tolerated(0.14) probably_damaging(0.932) TCGA-UF-A718-01 1 10197129 10197129 C T UBE4B Silent p.G743G 0.04 TCGA-UF-A718-01 1 144881472 144881472 A C PDE4DIP Missense_Mutation p.F1242V 0.13 tolerated(0.09) benign(0.008) TCGA-UF-A718-01 1 171514775 171514775 C A PRRC2C Missense_Mutation p.P1639T 0.17 unknown(0) TCGA-UF-A718-01 1 173772306 173772306 G C CENPL Missense_Mutation p.S299C 0.18 deleterious(0) probably_damaging(1) TCGA-UF-A718-01 1 183498656 183498656 A C SMG7 Missense_Mutation p.E277D 0.37 tolerated(0.09) probably_damaging(0.958) TCGA-UF-A718-01 1 207646267 207646267 T G CR2 Missense_Mutation p.I574S 0.21 deleterious(0) probably_damaging(0.984) TCGA-UF-A718-01 1 229460804 229460804 C T CCSAP 3'UTR 0.23 TCGA-UF-A718-01 1 45120116 45120116 G A TMEM53 3'UTR 0.07 TCGA-UF-A718-01 1 91781406 91781406 C A HFM1 Missense_Mutation p.A1036S 0.17 tolerated(0.28) benign(0.102) TCGA-UF-A718-01 1 91781407 91781407 G T HFM1 Missense_Mutation p.D1035E 0.17 deleterious(0) probably_damaging(0.978) TCGA-UF-A718-01 20 39989856 39989856 G A EMILIN3 3'UTR 0.27 TCGA-UF-A718-01 21 34634903 34634903 T C IFNAR2 Intron 0.24 TCGA-UF-A718-01 22 29195100 29195100 C A XBP1 Missense_Mutation p.R90L 0.22 deleterious(0) probably_damaging(0.965) TCGA-UF-A718-01 22 29833673 29833673 C T RFPL1 5'Flank 0.20 TCGA-UF-A718-01 22 43634951 43634951 G C SCUBE1 Missense_Mutation p.A246G 0.13 tolerated(0.07) possibly_damaging(0.458) TCGA-UF-A718-01 2 114513046 114513046 C T SLC35F5 Missense_Mutation p.R39K 0.10 tolerated_low_confidence(1) benign(0) TCGA-UF-A718-01 2 141072574 141072574 T A LRP1B Silent p.G4245G 0.27 TCGA-UF-A718-01 2 183888545 183888545 G A NCKAP1 Missense_Mutation p.R76C 0.22 deleterious(0) probably_damaging(0.947) TCGA-UF-A718-01 2 220404670 220404670 T A CHPF Missense_Mutation p.Q588L 0.20 deleterious(0) possibly_damaging(0.484) TCGA-UF-A718-01 2 220412513 220412513 G T TMEM198 Missense_Mutation p.G151V 0.14 deleterious(0) probably_damaging(0.988) TCGA-UF-A718-01 2 25469931 25469931 C A DNMT3A Nonsense_Mutation p.E371* 0.31 TCGA-UF-A718-01 2 90458619 90458619 C A CH17-132F21.1 Missense_Mutation p.Q99K 0.03 TCGA-UF-A718-01 3 129292448 129292448 C T PLXND1 Silent p.T942T 0.06 TCGA-UF-A718-01 3 138668424 138668424 G C C3orf72 Missense_Mutation p.G55R 0.21 tolerated_low_confidence(0.08) benign(0.002) TCGA-UF-A718-01 5 140188280 140188280 C T PCDHA4 Missense_Mutation p.A503V 0.24 deleterious_low_confidence(0.02) benign(0.067) TCGA-UF-A718-01 5 140503665 140503665 G A PCDHB4 Silent p.S695S 0.21 TCGA-UF-A718-01 5 154393522 154393522 G A KIF4B Missense_Mutation p.V35M 0.24 deleterious(0) probably_damaging(0.911) TCGA-UF-A718-01 5 80608566 80608566 G A ZCCHC9 3'UTR 0.21 TCGA-UF-A718-01 5 94044269 94044269 T A MCTP1 Missense_Mutation p.D959V 0.32 deleterious(0) probably_damaging(0.992) TCGA-UF-A718-01 6 101847104 101847104 G A GRIK2 5'UTR 0.08 TCGA-UF-A718-01 6 136593156 136593156 C G BCLAF1 Missense_Mutation p.V674L 0.05 tolerated(0.67) benign(0.019) TCGA-UF-A718-01 6 3284146 3284146 G A SLC22A23 Missense_Mutation p.S548F 0.33 deleterious(0) probably_damaging(0.995) TCGA-UF-A718-01 6 46690552 46690552 T C PLA2G7 Missense_Mutation p.Y26C 0.17 deleterious(0) benign(0.332) TCGA-UF-A718-01 6 70897859 70897859 C G COL19A1 Missense_Mutation p.I979M 0.22 tolerated(0.26) possibly_damaging(0.672) TCGA-UF-A718-01 6 84884658 84884658 A G KIAA1009 Missense_Mutation p.C605R 0.30 tolerated(0.36) benign(0.001) TCGA-UF-A718-01 7 116397691 116397691 G T MET Splice_Site p.X656_splice 0.22 TCGA-UF-A718-01 7 140404687 140404687 C G NDUFB2 Missense_Mutation p.Q91E 0.27 tolerated(0.3) benign(0.039) TCGA-UF-A718-01 7 27168752 27168752 G C HOXA4 3'UTR 0.28 TCGA-UF-A718-01 7 44747227 44747228 - C OGDH Frame_Shift_Ins p.N950Qfs*3 0.21 TCGA-UF-A718-01 7 89939466 89939466 A T C7orf63 Nonsense_Mutation p.K914* 0.22 TCGA-UF-A718-01 7 99689450 99689450 A G COPS6 3'UTR 0.14 TCGA-UF-A718-01 8 145739027 145739027 G A RECQL4 Missense_Mutation p.R710C 0.14 deleterious(0) probably_damaging(0.996) TCGA-UF-A718-01 X 1505588 1505588 C T SLC25A6 Silent p.K268K 0.22 TCGA-UF-A718-01 X 83129427 83129427 G A CYLC1 Missense_Mutation p.E571K 0.63 tolerated(0.63) benign(0.247) TCGA-UF-A718-01 X 91133694 91133694 G A PCDH11X Missense_Mutation p.A819T 0.46 deleterious(0.04) possibly_damaging(0.491) TCGA-UF-A718-01 Y 4966786 4966786 A - PCDH11Y Frame_Shift_Del p.R390Dfs*26 0.18 TCGA-UF-A719-01 10 114298011 114298011 C T VTI1A Missense_Mutation p.H117Y 0.37 deleterious(0.01) benign(0.267) TCGA-UF-A719-01 10 115970473 115970473 A G TDRD1 Silent p.P506P 0.45 TCGA-UF-A719-01 10 16982080 16982080 G T CUBN Silent p.I1833I 0.07 TCGA-UF-A719-01 10 33491727 33491727 C A NRP1 Intron 0.14 TCGA-UF-A719-01 10 44140203 44140203 T C ZNF32 Silent p.T39T 0.25 TCGA-UF-A719-01 10 71913669 71913669 T G SAR1A Missense_Mutation p.K135N 0.12 deleterious(0.01) possibly_damaging(0.458) TCGA-UF-A719-01 11 47754119 47754119 G A FNBP4 Missense_Mutation p.T597I 0.60 deleterious(0) probably_damaging(0.987) TCGA-UF-A719-01 11 5758360 5758360 G C OR56B1 Missense_Mutation p.S205T 0.35 tolerated(0.07) possibly_damaging(0.601) TCGA-UF-A719-01 11 75509403 75509403 T C DGAT2 Missense_Mutation p.F314S 0.36 deleterious(0) probably_damaging(0.989) TCGA-UF-A719-01 11 76834877 76834877 C T CAPN5 Silent p.A628A 0.43 TCGA-UF-A719-01 12 11461722 11461722 T G PRB4 Silent p.G65G 0.40 TCGA-UF-A719-01 12 123489929 123489929 G A PITPNM2 Silent p.L270L 0.26 TCGA-UF-A719-01 12 26551955 26551955 C T ITPR2 Missense_Mutation p.R2517Q 0.22 deleterious(0) probably_damaging(1) TCGA-UF-A719-01 12 32138718 32138718 A G KIAA1551 Missense_Mutation p.D1610G 0.50 deleterious(0.01) benign(0.018) TCGA-UF-A719-01 12 51758105 51758105 C A GALNT6 Silent p.L283L 0.59 TCGA-UF-A719-01 12 52567385 52567386 - G KRT80 Frame_Shift_Ins p.Q277Pfs*55 0.34 TCGA-UF-A719-01 12 85518291 85518291 A C LRRIQ1 Missense_Mutation p.E1334A 0.10 tolerated(0.05) benign(0.342) TCGA-UF-A719-01 12 96077300 96077300 G T NTN4 Missense_Mutation p.D456E 0.11 tolerated(0.06) benign(0.333) TCGA-UF-A719-01 13 37569653 37569653 G T ALG5 Silent p.A49A 0.25 TCGA-UF-A719-01 13 73636162 73636162 A G KLF5 Missense_Mutation p.D142G 0.12 deleterious(0.01) probably_damaging(0.956) TCGA-UF-A719-01 13 88328033 88328033 T C SLITRK5 Silent p.G130G 0.20 TCGA-UF-A719-01 14 20248621 20248621 G T OR4M1 Missense_Mutation p.C47F 0.23 tolerated(0.09) benign(0) TCGA-UF-A719-01 14 24687636 24687636 G A NEDD8-MDP1 Missense_Mutation p.T7M 0.15 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-UF-A719-01 14 75485569 75485569 G C MLH3 Missense_Mutation p.P1402R 0.12 deleterious(0) probably_damaging(1) TCGA-UF-A719-01 14 93263802 93263802 T C GOLGA5 Missense_Mutation p.L7P 0.16 deleterious(0) probably_damaging(0.991) TCGA-UF-A719-01 14 94956065 94956065 G T SERPINA12 Silent p.G315G 0.29 TCGA-UF-A719-01 15 38243375 38243375 G T TMCO5A Missense_Mutation p.K269N 0.24 deleterious(0.02) probably_damaging(0.928) TCGA-UF-A719-01 15 55838490 55838490 G A PYGO1 Missense_Mutation p.R331C 0.27 deleterious(0.01) probably_damaging(0.925) TCGA-UF-A719-01 15 59323022 59323022 A G RNF111 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-UF-A719-01 15 74327753 74327753 G A PML Intron 0.13 TCGA-UF-A719-01 16 2042734 2042734 G T SYNGR3 Silent p.A145A 0.33 TCGA-UF-A719-01 16 27751362 27751362 G A KIAA0556 Missense_Mutation p.D582N 0.48 tolerated(0.06) possibly_damaging(0.868) TCGA-UF-A719-01 16 27777777 27777777 C T KIAA0556 Silent p.P1319P 0.50 TCGA-UF-A719-01 16 71784159 71784159 T C AP1G1 Missense_Mutation p.Y457C 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-UF-A719-01 16 74425487 74425487 A T NPIPB15 Missense_Mutation p.N281Y 0.04 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-UF-A719-01 16 9857217 9857217 G A GRIN2A Missense_Mutation p.A1395V 0.47 tolerated(0.26) benign(0.01) TCGA-UF-A719-01 17 11513834 11513834 C G DNAH9 Missense_Mutation p.P246A 0.32 benign(0.141) TCGA-UF-A719-01 17 18286168 18286168 G A EVPLL Silent p.P167P 0.25 TCGA-UF-A719-01 17 34079505 34079505 C A GAS2L2 Missense_Mutation p.R122L 0.13 deleterious(0) probably_damaging(1) TCGA-UF-A719-01 17 40696000 40696000 C T NAGLU Missense_Mutation p.A659V 0.10 deleterious(0) probably_damaging(0.999) TCGA-UF-A719-01 17 42286824 42286824 C T UBTF Missense_Mutation p.G601S 0.18 tolerated(0.27) probably_damaging(0.938) TCGA-UF-A719-01 17 52993200 52993200 C T TOM1L1 Missense_Mutation p.H233Y 0.13 tolerated(0.33) benign(0.009) TCGA-UF-A719-01 17 56271375 56271375 C T EPX Silent p.P172P 0.62 TCGA-UF-A719-01 17 6538401 6538401 G A KIAA0753 Missense_Mutation p.S8L 0.34 tolerated(0.41) benign(0.266) TCGA-UF-A719-01 17 7479955 7479955 C T EIF4A1 Silent p.H153H 0.08 TCGA-UF-A719-01 17 7578266 7578266 T A TP53 Missense_Mutation p.I195F 0.35 deleterious(0) probably_damaging(1) TCGA-UF-A719-01 17 7814165 7814165 G A CHD3 Missense_Mutation p.A1978T 0.06 possibly_damaging(0.483) TCGA-UF-A719-01 17 78317738 78317738 C T RNF213 Missense_Mutation p.R2089W 0.09 probably_damaging(1) TCGA-UF-A719-01 18 13095516 13095516 C G CEP192 Missense_Mutation p.S2090C 0.07 tolerated(0.23) benign(0.022) TCGA-UF-A719-01 18 22805927 22805927 T C ZNF521 Missense_Mutation p.H652R 0.12 deleterious(0) probably_damaging(0.999) TCGA-UF-A719-01 18 28919899 28919899 G A DSG1 Missense_Mutation p.G533E 0.10 tolerated(0.53) benign(0) TCGA-UF-A719-01 18 47017960 47017960 G A RPL17 5'UTR 0.11 TCGA-UF-A719-01 19 14580993 14580993 G A PKN1 Missense_Mutation p.R777Q 0.08 deleterious(0.02) possibly_damaging(0.851) TCGA-UF-A719-01 19 20728276 20728276 T A ZNF737 Missense_Mutation p.T245S 0.29 tolerated(0.16) benign(0.021) TCGA-UF-A719-01 19 23837404 23837404 A G ZNF675 Missense_Mutation p.F111L 0.05 tolerated(1) benign(0) TCGA-UF-A719-01 19 35449245 35449245 G A ZNF792 Missense_Mutation p.P505L 0.59 deleterious(0.01) probably_damaging(1) TCGA-UF-A719-01 19 44741014 44741015 - A ZNF227 3'UTR 0.40 TCGA-UF-A719-01 19 45494630 45494630 C T CLPTM1 Silent p.F518F 0.71 TCGA-UF-A719-01 19 52941775 52941775 C A ZNF534 Nonsense_Mutation p.Y367* 0.67 TCGA-UF-A719-01 1 109377664 109377664 G T AKNAD1 Missense_Mutation p.H517Q 0.55 tolerated(0.34) benign(0.271) TCGA-UF-A719-01 1 150529665 150529665 G A ADAMTSL4 Missense_Mutation p.R634H 0.18 deleterious(0.02) probably_damaging(0.98) TCGA-UF-A719-01 1 152281985 152281985 G A FLG Missense_Mutation p.R1793C 0.55 possibly_damaging(0.689) TCGA-UF-A719-01 1 155226544 155226544 G A SCAMP3 Missense_Mutation p.T273I 0.54 tolerated(0.73) benign(0.024) TCGA-UF-A719-01 1 155316205 155316205 C G ASH1L Missense_Mutation p.C2620S 0.07 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-UF-A719-01 1 155893432 155893432 T G KIAA0907 Missense_Mutation p.N314H 0.22 deleterious(0) possibly_damaging(0.896) TCGA-UF-A719-01 1 177901895 177901895 G T SEC16B Nonsense_Mutation p.S957* 0.11 TCGA-UF-A719-01 1 192127705 192127705 G C RGS18 5'UTR 0.20 TCGA-UF-A719-01 1 196706756 196706756 C T CFH Silent p.Y916Y 0.09 TCGA-UF-A719-01 1 216108138 216108138 C A USH2A Splice_Site p.X2374_splice 0.29 TCGA-UF-A719-01 1 220369734 220369734 A G RAB3GAP2 Missense_Mutation p.M273T 0.21 tolerated(0.52) benign(0.002) TCGA-UF-A719-01 1 41303354 41303354 G A KCNQ4 Missense_Mutation p.G588D 0.41 deleterious(0) probably_damaging(1) TCGA-UF-A719-01 1 46649973 46649973 G A TSPAN1 Silent p.V56V 0.25 TCGA-UF-A719-01 1 53927258 53927258 C T DMRTB1 Silent p.G230G 0.30 TCGA-UF-A719-01 1 78097599 78097599 C A ZZZ3 Nonsense_Mutation p.E481* 0.16 TCGA-UF-A719-01 1 8398028 8398028 G A SLC45A1 Missense_Mutation p.A584T 0.18 deleterious(0.05) possibly_damaging(0.478) TCGA-UF-A719-01 20 43803615 43803615 C T PI3 Silent p.L18L 0.30 TCGA-UF-A719-01 20 50407958 50407971 GTGTCTAGCGCCAC - SALL4 Frame_Shift_Del p.V351Ifs*30 0.31 TCGA-UF-A719-01 20 51870694 51870694 C T TSHZ2 Missense_Mutation p.H233Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-UF-A719-01 20 52198785 52198785 C T ZNF217 Missense_Mutation p.S194N 0.03 deleterious(0.03) unknown(0) TCGA-UF-A719-01 20 61488874 61488874 C - TCFL5 Frame_Shift_Del p.A371Pfs*53 0.12 TCGA-UF-A719-01 20 9459635 9459635 G C PLCB4 Missense_Mutation p.M1188I 0.12 tolerated_low_confidence(0.47) benign(0) TCGA-UF-A719-01 21 27113950 27113950 T C GABPA Missense_Mutation p.I14T 0.51 tolerated_low_confidence(0.91) benign(0) TCGA-UF-A719-01 21 40610451 40610451 C T BRWD1 Missense_Mutation p.E844K 0.04 deleterious(0.03) probably_damaging(0.952) TCGA-UF-A719-01 2 102445969 102445969 C G MAP4K4 Missense_Mutation p.L141V 0.31 deleterious_low_confidence(0) unknown(0) TCGA-UF-A719-01 2 116257182 116257182 T A DPP10 Splice_Site p.X126_splice 0.08 TCGA-UF-A719-01 2 167273361 167273361 T A SCN7A Silent p.P1090P 0.12 TCGA-UF-A719-01 2 169826657 169826657 G A ABCB11 Silent p.I569I 0.44 TCGA-UF-A719-01 2 187694508 187694508 A G ZSWIM2 Silent p.C347C 0.10 TCGA-UF-A719-01 2 210574887 210574887 G A MAP2 Missense_Mutation p.R1661Q 0.27 tolerated(0.09) probably_damaging(0.995) TCGA-UF-A719-01 2 211523412 211523412 G C CPS1 Missense_Mutation p.L1258F 0.07 deleterious(0.01) possibly_damaging(0.595) TCGA-UF-A719-01 2 238990769 238990769 G A SCLY Silent p.T240T 0.05 TCGA-UF-A719-01 2 27353219 27353219 T G ABHD1 Missense_Mutation p.I314R 0.29 deleterious(0) benign(0.121) TCGA-UF-A719-01 2 3691473 3691473 C T COLEC11 Missense_Mutation p.A208V 0.12 deleterious(0.02) benign(0.013) TCGA-UF-A719-01 2 89111089 89111089 G A MIR4436A 5'Flank 0.45 TCGA-UF-A719-01 3 101383452 101383452 A T ZBTB11 Missense_Mutation p.V577D 0.05 tolerated(0.63) benign(0.009) TCGA-UF-A719-01 3 108677626 108677626 T C MORC1 3'UTR 0.12 TCGA-UF-A719-01 3 140401991 140401991 G A TRIM42 Silent p.K343K 0.26 TCGA-UF-A719-01 3 156979061 156979061 G A VEPH1 Silent p.F788F 0.32 TCGA-UF-A719-01 3 186461543 186461543 C A KNG1 3'Flank 0.09 TCGA-UF-A719-01 3 38622444 38622444 G A SCN5A Missense_Mutation p.T1069M 0.58 deleterious(0.02) possibly_damaging(0.804) TCGA-UF-A719-01 3 62570911 62570911 T G CADPS Missense_Mutation p.K509T 0.12 deleterious(0.02) benign(0.403) TCGA-UF-A719-01 4 151242354 151242354 T C LRBA Missense_Mutation p.H2551R 0.18 deleterious(0) probably_damaging(0.918) TCGA-UF-A719-01 4 162307559 162307559 T A FSTL5 Missense_Mutation p.K628N 0.45 deleterious(0) probably_damaging(0.977) TCGA-UF-A719-01 4 166033961 166033961 G T TMEM192 5'UTR 0.22 TCGA-UF-A719-01 4 2733563 2733563 A T FAM193A Missense_Mutation p.S1256C 0.46 deleterious(0) probably_damaging(0.994) TCGA-UF-A719-01 4 38690369 38690369 C A KLF3 Nonsense_Mutation p.S74* 0.30 TCGA-UF-A719-01 4 54231861 54231861 C T SCFD2 Missense_Mutation p.G83D 0.34 tolerated(0.14) probably_damaging(1) TCGA-UF-A719-01 4 72338564 72338564 T C SLC4A4 Missense_Mutation p.F594L 0.36 tolerated(0.6) possibly_damaging(0.524) TCGA-UF-A719-01 4 73013550 73013550 C G NPFFR2 3'UTR 0.29 TCGA-UF-A719-01 4 78815401 78815401 C T MRPL1 Nonsense_Mutation p.R223* 0.18 TCGA-UF-A719-01 4 83349206 83349210 CTTCA - HNRNPDL Frame_Shift_Del p.E246Tfs*3 0.17 TCGA-UF-A719-01 4 96025719 96025719 G A BMPR1B Splice_Site p.X78_splice 0.23 TCGA-UF-A719-01 5 112487041 112487041 G A MCC Missense_Mutation p.R236W 0.27 deleterious(0) probably_damaging(0.992) TCGA-UF-A719-01 5 126206380 126206380 G A MARCH3 Missense_Mutation p.P236L 0.42 tolerated(0.29) benign(0.001) TCGA-UF-A719-01 5 140256512 140256512 G A PCDHA12 Silent p.Q485Q 0.05 TCGA-UF-A719-01 5 176675267 176675267 C A NSD1 Missense_Mutation p.S1528Y 0.72 deleterious(0) possibly_damaging(0.54) TCGA-UF-A719-01 5 26906947 26906947 C T CDH9 Missense_Mutation p.G175D 0.24 deleterious(0) probably_damaging(0.999) TCGA-UF-A719-01 5 50090900 50090900 G A PARP8 Silent p.S359S 0.21 TCGA-UF-A719-01 5 64913958 64913958 G A TRIM23 Missense_Mutation p.A69V 0.16 tolerated(0.33) benign(0.015) TCGA-UF-A719-01 5 64913959 64913959 C T TRIM23 Missense_Mutation p.A69T 0.15 tolerated(0.84) benign(0.009) TCGA-UF-A719-01 5 96322292 96322292 A G LNPEP Missense_Mutation p.E350G 0.25 tolerated(0.35) possibly_damaging(0.491) TCGA-UF-A719-01 5 96512863 96512871 TATAGCCAT GCCAA RIOK2 Frame_Shift_Del p.S154Vfs*5 0.24 TCGA-UF-A719-01 6 109323525 109323525 G T SESN1 Silent p.R101R 0.54 TCGA-UF-A719-01 6 110763810 110763810 G C SLC22A16 Missense_Mutation p.L274V 0.19 deleterious(0) probably_damaging(1) TCGA-UF-A719-01 6 12120177 12120177 G C HIVEP1 Missense_Mutation p.R50P 0.15 deleterious(0) probably_damaging(1) TCGA-UF-A719-01 6 151671662 151671662 G A AKAP12 Silent p.Q712Q 0.45 TCGA-UF-A719-01 6 152652079 152652079 C G SYNE1 Missense_Mutation p.A4581P 0.18 probably_damaging(0.941) TCGA-UF-A719-01 6 160200112 160200112 C T TCP1 Missense_Mutation p.E546K 0.05 tolerated_low_confidence(0.19) benign(0.001) TCGA-UF-A719-01 6 26597210 26597210 C T ABT1 5'UTR 0.27 TCGA-UF-A719-01 6 27839984 27839984 T A HIST1H3I Missense_Mutation p.K37M 0.28 deleterious_low_confidence(0.01) benign(0.164) TCGA-UF-A719-01 7 107638831 107638831 C T LAMB1 Missense_Mutation p.R107H 0.27 deleterious(0.03) probably_damaging(0.975) TCGA-UF-A719-01 7 12727879 12727879 A C ARL4A 5'UTR 0.30 TCGA-UF-A719-01 7 150093929 150093929 G A ZNF775 Silent p.S120S 0.13 TCGA-UF-A719-01 7 154862765 154862765 G A HTR5A-AS1 Silent p.A83A 0.38 TCGA-UF-A719-01 7 51095537 51095537 G C COBL Missense_Mutation p.P1086A 0.11 tolerated(0.47) benign(0.004) TCGA-UF-A719-01 7 6085709 6085709 C T EIF2AK1 Missense_Mutation p.C208Y 0.07 deleterious(0.03) possibly_damaging(0.893) TCGA-UF-A719-01 8 110467081 110467081 G A PKHD1L1 Missense_Mutation p.G2292S 0.35 deleterious(0) probably_damaging(0.992) TCGA-UF-A719-01 8 113484897 113484897 A T CSMD3 Missense_Mutation p.V1773D 0.42 deleterious(0) probably_damaging(0.98) TCGA-UF-A719-01 8 145541642 145541642 C T DGAT1 Missense_Mutation p.E264K 0.16 deleterious(0) probably_damaging(0.985) TCGA-UF-A719-01 8 17088314 17088314 T C CNOT7 Missense_Mutation p.H258R 0.09 tolerated(0.35) benign(0.006) TCGA-UF-A719-01 8 48309052 48309052 G C SPIDR Silent p.S214S 0.28 TCGA-UF-A719-01 8 71593320 71593320 G T XKR9 Missense_Mutation p.M9I 0.32 tolerated(1) benign(0.001) TCGA-UF-A719-01 8 87470217 87470217 A G WWP1 Missense_Mutation p.Y821C 0.22 deleterious(0) probably_damaging(1) TCGA-UF-A719-01 9 124329482 124329482 C T DAB2IP Silent p.S5S 0.13 TCGA-UF-A719-01 9 136230344 136230344 C T SURF4 3'UTR 0.25 TCGA-UF-A719-01 9 90500168 90500168 C G SPATA31E1 Missense_Mutation p.P256A 0.28 tolerated(0.09) benign(0.075) TCGA-UF-A719-01 9 91973672 91973672 G C SECISBP2 Missense_Mutation p.G833A 0.53 tolerated(0.09) benign(0) TCGA-UF-A719-01 X 114953364 114953364 G A RP1-241P17.4 Silent p.F62F 0.08 TCGA-UF-A719-01 X 15613095 15613095 A G ACE2 Missense_Mutation p.L73S 0.55 tolerated(0.22) benign(0.007) TCGA-UF-A719-01 X 19373837 19373837 G A PDHA1 Missense_Mutation p.A303T 0.27 deleterious(0.02) probably_damaging(1) TCGA-UF-A71A-01 10 115534704 115534704 G T PLEKHS1 Missense_Mutation p.C294F 0.16 tolerated(0.48) possibly_damaging(0.706) TCGA-UF-A71A-01 10 135086790 135086790 G A ADAM8 Missense_Mutation p.R181W 0.60 deleterious(0) probably_damaging(0.999) TCGA-UF-A71A-01 10 135113043 135113043 C T TUBGCP2 Missense_Mutation p.S115N 0.51 deleterious(0.03) benign(0.139) TCGA-UF-A71A-01 10 68687004 68687004 A C LRRTM3 Missense_Mutation p.R110S 0.11 deleterious(0) probably_damaging(0.997) TCGA-UF-A71A-01 10 92645569 92645569 A G RPP30 Missense_Mutation p.I115V 0.28 tolerated(0.73) benign(0.006) TCGA-UF-A71A-01 11 117049982 117049982 G - SIDT2 Frame_Shift_Del p.M1? 0.20 TCGA-UF-A71A-01 11 123900938 123900938 A - OR10G8 Frame_Shift_Del p.I204* 0.20 TCGA-UF-A71A-01 11 124180230 124180230 C G OR8D1 Missense_Mutation p.V145L 0.53 tolerated(0.13) benign(0.009) TCGA-UF-A71A-01 11 128712308 128712308 T C KCNJ1 Missense_Mutation p.N2S 0.22 tolerated_low_confidence(0.37) benign(0) TCGA-UF-A71A-01 11 16071484 16071484 C G SOX6 Missense_Mutation p.D418H 0.07 deleterious(0.03) possibly_damaging(0.894) TCGA-UF-A71A-01 11 3115607 3115607 G T OSBPL5 Intron 0.32 TCGA-UF-A71A-01 11 31453998 31453998 A G IMMP1L 3'UTR 0.31 TCGA-UF-A71A-01 11 33565886 33565886 C T KIAA1549L Intron 0.08 TCGA-UF-A71A-01 11 40136232 40136232 T A LRRC4C Silent p.T537T 0.08 TCGA-UF-A71A-01 11 40137329 40137329 G C LRRC4C Missense_Mutation p.P172A 0.28 tolerated(0.06) benign(0.358) TCGA-UF-A71A-01 11 44286580 44286580 C A ALX4 Missense_Mutation p.G354W 0.38 deleterious(0) probably_damaging(0.999) TCGA-UF-A71A-01 11 47346191 47346191 A C MADD Intron 0.58 TCGA-UF-A71A-01 11 5411022 5411022 T C OR51M1 Missense_Mutation p.F132L 0.32 tolerated(0.06) probably_damaging(0.996) TCGA-UF-A71A-01 11 55872781 55872781 C A OR8H2 Missense_Mutation p.T88N 0.10 deleterious(0.03) benign(0.071) TCGA-UF-A71A-01 11 60609627 60609627 G T CCDC86 Silent p.R10R 0.25 TCGA-UF-A71A-01 11 62285198 62285198 G C AHNAK Missense_Mutation p.P5564R 0.06 probably_damaging(0.956) TCGA-UF-A71A-01 11 64662327 64662327 C T ATG2A 3'UTR 0.28 TCGA-UF-A71A-01 11 85428535 85428535 C T SYTL2 Missense_Mutation p.V874I 0.29 tolerated(1) benign(0.001) TCGA-UF-A71A-01 11 88386464 88386464 T C GRM5 Missense_Mutation p.Y340C 0.09 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 12 100200410 100200410 G A ANKS1B Silent p.L147L 0.15 TCGA-UF-A71A-01 12 109921470 109921470 C T UBE3B Silent p.A38A 0.32 TCGA-UF-A71A-01 12 112369503 112369503 C T TMEM116 Silent p.Q312Q 0.37 TCGA-UF-A71A-01 12 112481476 112481476 C A NAA25 Nonsense_Mutation p.E735* 0.38 TCGA-UF-A71A-01 12 11506762 11506762 G C PRB1 Missense_Mutation p.S92C 0.22 tolerated_low_confidence(0.11) unknown(0) TCGA-UF-A71A-01 12 16048404 16048404 A G STRAP Silent p.R204R 0.34 TCGA-UF-A71A-01 12 18890327 18890327 G T PLCZ1 5'UTR 0.25 TCGA-UF-A71A-01 12 20769240 20769240 G T PDE3A Missense_Mutation p.G449V 0.14 deleterious(0.01) probably_damaging(1) TCGA-UF-A71A-01 12 39763954 39763954 C A KIF21A Missense_Mutation p.D52Y 0.25 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 12 42707675 42707675 C G ZCRB1 Splice_Site p.X149_splice 0.38 TCGA-UF-A71A-01 12 498090 498090 T G KDM5A Intron 0.32 TCGA-UF-A71A-01 12 52913888 52913888 G T KRT5 Missense_Mutation p.L65I 0.40 deleterious(0) benign(0.373) TCGA-UF-A71A-01 12 53202524 53202524 G A KRT4 Silent p.Y315Y 0.19 TCGA-UF-A71A-01 12 57397279 57397279 G C ZBTB39 Missense_Mutation p.L475V 0.14 tolerated(1) benign(0.004) TCGA-UF-A71A-01 12 57490672 57490672 C T STAT6 Missense_Mutation p.C772Y 0.49 tolerated_low_confidence(0.37) possibly_damaging(0.646) TCGA-UF-A71A-01 12 6030359 6030359 G A ANO2 Silent p.S123S 0.26 TCGA-UF-A71A-01 13 100617831 100617831 G A ZIC5 Missense_Mutation p.P598S 0.21 tolerated(0.23) possibly_damaging(0.774) TCGA-UF-A71A-01 13 25480447 25480447 C T CENPJ Missense_Mutation p.E577K 0.18 deleterious(0) probably_damaging(0.999) TCGA-UF-A71A-01 13 45594503 45594503 T G GPALPP1 Missense_Mutation p.D248E 0.20 tolerated(0.46) benign(0.002) TCGA-UF-A71A-01 13 61987012 61987012 G A PCDH20 Missense_Mutation p.P407L 0.16 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 13 70681435 70681435 T C KLHL1 Missense_Mutation p.M133V 0.73 tolerated_low_confidence(0.27) benign(0.001) TCGA-UF-A71A-01 13 92003611 92003611 A G MIR17HG RNA 0.74 TCGA-UF-A71A-01 13 93518618 93518618 G A GPC5 Missense_Mutation p.G549R 0.72 tolerated(0.1) benign(0.067) TCGA-UF-A71A-01 14 100995422 100995422 C T WDR25 Silent p.P430P 0.20 TCGA-UF-A71A-01 14 105406956 105406956 A C AHNAK2 Silent p.A4944A 0.16 TCGA-UF-A71A-01 14 23855803 23855803 G T MYH6 Silent p.I1560I 0.13 TCGA-UF-A71A-01 14 45658390 45658390 C T FANCM Missense_Mutation p.P1722L 0.21 deleterious(0.05) benign(0.022) TCGA-UF-A71A-01 14 62213961 62213961 A G HIF1A 3'UTR 1.00 TCGA-UF-A71A-01 14 73006752 73006752 G A RGS6 Missense_Mutation p.E458K 0.38 tolerated(0.74) benign(0) TCGA-UF-A71A-01 14 74989534 74989534 C A LTBP2 Missense_Mutation p.S873I 0.17 deleterious(0.03) possibly_damaging(0.863) TCGA-UF-A71A-01 14 77576297 77576297 C T CIPC Silent p.V93V 0.13 TCGA-UF-A71A-01 14 78205149 78205149 C A SNW1 Missense_Mutation p.D169Y 0.08 deleterious(0) possibly_damaging(0.492) TCGA-UF-A71A-01 15 25339085 25339085 G A SNORD116-25 5'Flank 0.22 TCGA-UF-A71A-01 15 33603218 33603218 G A RYR3 5'UTR 0.52 TCGA-UF-A71A-01 15 45406917 45406917 C T DUOXA2 Silent p.F38F 0.27 TCGA-UF-A71A-01 15 75980081 75980081 C T CSPG4 Missense_Mutation p.D1109N 0.22 deleterious(0) probably_damaging(0.997) TCGA-UF-A71A-01 15 85486741 85486741 C T SLC28A1 Silent p.I549I 0.17 TCGA-UF-A71A-01 16 31120604 31120604 C A BCKDK Silent p.L20L 0.17 TCGA-UF-A71A-01 16 360043 360043 C T AXIN1 Missense_Mutation p.R349H 0.20 deleterious(0) benign(0.032) TCGA-UF-A71A-01 16 3613383 3613383 C T NLRC3 Missense_Mutation p.G566S 0.75 deleterious(0) probably_damaging(0.999) TCGA-UF-A71A-01 16 65026924 65026924 G C CDH11 Missense_Mutation p.I179M 0.33 tolerated(0.31) benign(0.03) TCGA-UF-A71A-01 17 18070934 18070934 A T MYO15A Missense_Mutation p.S3327C 0.12 unknown(0) TCGA-UF-A71A-01 17 20405939 20405939 G A RP11-434D2.7 3'Flank 0.30 TCGA-UF-A71A-01 17 30219763 30219763 C A UTP6 Intron 0.17 TCGA-UF-A71A-01 17 39340905 39340905 C G KRTAP4-1 Missense_Mutation p.V68L 0.34 tolerated(0.3) benign(0) TCGA-UF-A71A-01 17 39340909 39340909 G A KRTAP4-1 Silent p.H66H 0.36 TCGA-UF-A71A-01 17 40690691 40690691 C T NAGLU Missense_Mutation p.R228W 0.19 deleterious(0.02) benign(0.082) TCGA-UF-A71A-01 17 44076712 44076712 G T STH Missense_Mutation p.A23S 0.24 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-UF-A71A-01 17 58040503 58040503 A G RNFT1 Silent p.L67L 0.32 TCGA-UF-A71A-01 17 70119806 70119806 T A SOX9 Missense_Mutation p.F270I 0.53 deleterious(0) probably_damaging(0.996) TCGA-UF-A71A-01 17 7406588 7406588 A G POLR2A Missense_Mutation p.I969V 0.22 benign(0.122) TCGA-UF-A71A-01 17 7534049 7534049 T C SHBG Silent p.F85F 0.05 TCGA-UF-A71A-01 17 7534051 7534051 A T SHBG Missense_Mutation p.Y86F 0.06 tolerated(0.16) probably_damaging(0.915) TCGA-UF-A71A-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.27 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 17 7578176 7578176 C A TP53 Splice_Site p.X224_splice 0.38 TCGA-UF-A71A-01 17 7611407 7611407 G A EFNB3 Missense_Mutation p.G85E 0.50 tolerated(0.89) benign(0.005) TCGA-UF-A71A-01 17 7948606 7948606 C T ALOX15B Silent p.T300T 0.47 TCGA-UF-A71A-01 17 8077876 8077876 C T TMEM107 Nonsense_Mutation p.W111* 0.23 TCGA-UF-A71A-01 17 9808174 9808174 G C RCVRN Silent p.L108L 0.21 TCGA-UF-A71A-01 18 13737060 13737060 T G RNMT Missense_Mutation p.L202W 0.25 deleterious(0) probably_damaging(0.999) TCGA-UF-A71A-01 18 19997851 19997851 G A CTAGE1 5'UTR 0.19 TCGA-UF-A71A-01 18 21053550 21053550 A G RIOK3 Missense_Mutation p.I325V 0.65 tolerated(0.18) possibly_damaging(0.557) TCGA-UF-A71A-01 18 21451526 21451526 G T LAMA3 Missense_Mutation p.E1633D 0.15 benign(0.073) TCGA-UF-A71A-01 18 31325430 31325430 C T ASXL3 Missense_Mutation p.P1873L 0.51 benign(0.006) TCGA-UF-A71A-01 18 32621480 32621480 G C MAPRE2 5'UTR 0.16 TCGA-UF-A71A-01 18 65178376 65178376 A C DSEL Missense_Mutation p.I1167R 0.28 deleterious(0) possibly_damaging(0.831) TCGA-UF-A71A-01 18 76753744 76753744 C T SALL3 Nonsense_Mutation p.Q585* 0.14 TCGA-UF-A71A-01 19 23543308 23543308 G T ZNF91 Missense_Mutation p.P825T 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-UF-A71A-01 19 24288852 24288852 A T ZNF254 Missense_Mutation p.R47S 0.19 deleterious(0.02) possibly_damaging(0.817) TCGA-UF-A71A-01 19 38103844 38103844 G A ZNF540 Missense_Mutation p.E555K 0.06 tolerated(0.07) possibly_damaging(0.571) TCGA-UF-A71A-01 19 38160504 38160504 T C ZNF781 Silent p.S182S 0.17 TCGA-UF-A71A-01 19 40739396 40739396 C T AKT2 3'UTR 0.08 TCGA-UF-A71A-01 19 43376172 43376172 G T PSG1 Silent p.S152S 0.14 TCGA-UF-A71A-01 19 46627904 46627904 C T IGFL3 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) benign(0.216) TCGA-UF-A71A-01 19 47980089 47980089 G T KPTN Missense_Mutation p.P324T 0.36 tolerated(0.35) benign(0.354) TCGA-UF-A71A-01 19 50150067 50150067 C T SCAF1 Missense_Mutation p.A153V 0.48 unknown(0) TCGA-UF-A71A-01 19 53611915 53611915 G A ZNF415 Silent p.I461I 0.16 TCGA-UF-A71A-01 19 53612343 53612343 G C ZNF415 Missense_Mutation p.Q319E 0.21 tolerated(0.15) benign(0.004) TCGA-UF-A71A-01 19 53793208 53793208 C T BIRC8 Silent p.G140G 0.14 TCGA-UF-A71A-01 19 54081126 54081126 T A ZNF331 Missense_Mutation p.S438T 0.35 deleterious(0.02) benign(0.058) TCGA-UF-A71A-01 19 54135361 54135361 A C DPRX Translation_Start_Site p.M1? 0.37 deleterious(0) possibly_damaging(0.845) TCGA-UF-A71A-01 19 55964614 55964614 C T ISOC2 3'UTR 0.64 TCGA-UF-A71A-01 19 57036677 57036677 C T ZNF471 Missense_Mutation p.S414L 0.33 tolerated(0.28) benign(0.045) TCGA-UF-A71A-01 19 57641825 57641825 C A USP29 Silent p.P594P 0.30 TCGA-UF-A71A-01 19 58490276 58490276 G A ZNF606 Missense_Mutation p.T591M 0.46 deleterious(0) probably_damaging(0.998) TCGA-UF-A71A-01 1 111147088 111147088 A G KCNA2 Missense_Mutation p.L106S 0.08 tolerated(0.06) possibly_damaging(0.621) TCGA-UF-A71A-01 1 156263268 156263268 A G C1orf85 Missense_Mutation p.C300R 0.23 deleterious(0) benign(0.435) TCGA-UF-A71A-01 1 159410019 159410019 G T OR10J1 Silent p.L157L 0.50 TCGA-UF-A71A-01 1 162549382 162549382 C A UAP1 Missense_Mutation p.S217Y 0.56 deleterious(0) probably_damaging(0.919) TCGA-UF-A71A-01 1 169345982 169345982 C G BLZF1 Missense_Mutation p.A78G 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.706) TCGA-UF-A71A-01 1 173962208 173962208 A T RC3H1 5'UTR 0.55 TCGA-UF-A71A-01 1 176564553 176564553 A G PAPPA2 Missense_Mutation p.T605A 0.18 deleterious(0) probably_damaging(0.964) TCGA-UF-A71A-01 1 183095268 183095268 G A LAMC1 Missense_Mutation p.A939T 0.30 tolerated(0.27) benign(0.142) TCGA-UF-A71A-01 1 197643257 197643257 C T DENND1B Missense_Mutation p.V57I 0.47 tolerated(0.53) benign(0.012) TCGA-UF-A71A-01 1 216737575 216737575 G A ESRRG Missense_Mutation p.A295V 0.31 deleterious(0) probably_damaging(0.996) TCGA-UF-A71A-01 1 219383944 219383944 A G LYPLAL1 Silent p.V144V 0.53 TCGA-UF-A71A-01 1 222892303 222892303 G A BROX Silent p.L46L 0.18 TCGA-UF-A71A-01 1 27124394 27124394 A G PIGV 3'UTR 0.50 TCGA-UF-A71A-01 1 44133692 44133692 T C KDM4A Splice_Site p.X388_splice 0.69 TCGA-UF-A71A-01 1 70541831 70541831 T C LRRC7 Silent p.Y1396Y 0.64 TCGA-UF-A71A-01 1 89474782 89474782 T C GBP3 Missense_Mutation p.M503V 0.07 tolerated(0.22) benign(0.014) TCGA-UF-A71A-01 1 95005817 95005817 T C F3 Missense_Mutation p.I70V 0.68 tolerated(0.06) possibly_damaging(0.723) TCGA-UF-A71A-01 20 1145041 1145041 C T PSMF1 Missense_Mutation p.P229S 0.13 deleterious(0) probably_damaging(0.999) TCGA-UF-A71A-01 20 43129789 43129789 T C SERINC3 Missense_Mutation p.Y403C 0.56 deleterious(0.01) benign(0.35) TCGA-UF-A71A-01 20 43384687 43384687 C T RIMS4 3'UTR 0.55 TCGA-UF-A71A-01 20 49575387 49575387 C T MOCS3 Missense_Mutation p.S3F 0.26 deleterious_low_confidence(0.04) benign(0.121) TCGA-UF-A71A-01 21 27284224 27284224 T C APP Missense_Mutation p.M580V 0.61 tolerated(0.16) benign(0.004) TCGA-UF-A71A-01 21 43897434 43897434 C T RSPH1 Missense_Mutation p.D232N 0.35 tolerated(0.13) benign(0.276) TCGA-UF-A71A-01 21 45949798 45949798 C A TSPEAR Missense_Mutation p.A225S 0.23 deleterious(0.02) possibly_damaging(0.873) TCGA-UF-A71A-01 21 47662744 47662744 G T MCM3AP Missense_Mutation p.Q1800K 0.06 tolerated(0.12) benign(0.058) TCGA-UF-A71A-01 21 47662745 47662745 C T MCM3AP Silent p.T1799T 0.06 TCGA-UF-A71A-01 22 22279896 22279896 T A PPM1F Intron 0.22 TCGA-UF-A71A-01 22 29445592 29445592 C T ZNRF3 Nonsense_Mutation p.Q475* 0.10 TCGA-UF-A71A-01 2 101624202 101624202 G C TBC1D8 3'UTR 0.19 TCGA-UF-A71A-01 2 109088522 109088522 C T GCC2 Silent p.L913L 0.20 TCGA-UF-A71A-01 2 113940316 113940316 G A PSD4 Missense_Mutation p.D95N 0.23 deleterious_low_confidence(0.03) benign(0.358) TCGA-UF-A71A-01 2 1271319 1271319 G A SNTG2 Silent p.T420T 0.18 TCGA-UF-A71A-01 2 12880597 12880597 G T TRIB2 Missense_Mutation p.V237L 0.38 deleterious(0.02) benign(0.328) TCGA-UF-A71A-01 2 155099238 155099238 A G GALNT13 Missense_Mutation p.Y169C 0.21 deleterious(0) probably_damaging(0.975) TCGA-UF-A71A-01 2 174828671 174828671 G C SP3 Intron 0.23 TCGA-UF-A71A-01 2 177036642 177036642 C A HOXD3 Silent p.A313A 0.17 TCGA-UF-A71A-01 2 18766140 18766140 C T NT5C1B Silent p.A181A 0.28 TCGA-UF-A71A-01 2 203693718 203693718 C T ICA1L Silent p.G5G 0.26 TCGA-UF-A71A-01 2 20840568 20840568 C T HS1BP3 Intron 0.41 TCGA-UF-A71A-01 2 28766125 28766125 G A PLB1 Nonsense_Mutation p.W309* 0.50 TCGA-UF-A71A-01 2 31589782 31589782 C T XDH Missense_Mutation p.G759E 0.18 tolerated(0.1) probably_damaging(1) TCGA-UF-A71A-01 2 3392051 3392051 G T TRAPPC12 Missense_Mutation p.L219F 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.794) TCGA-UF-A71A-01 2 48848402 48848402 T G STON1-GTF2A1L Missense_Mutation p.L778V 0.17 deleterious(0.04) possibly_damaging(0.688) TCGA-UF-A71A-01 2 60695932 60695932 C G BCL11A Missense_Mutation p.R141P 0.12 tolerated(0.27) benign(0) TCGA-UF-A71A-01 2 74779668 74779668 C T LOXL3 Missense_Mutation p.G32S 0.33 tolerated(0.84) benign(0.01) TCGA-UF-A71A-01 2 90139484 90139484 C A IGKV1D-16 Missense_Mutation p.S85R 0.36 deleterious(0.04) possibly_damaging(0.5) TCGA-UF-A71A-01 3 112546292 112546292 T C CD200R1L Missense_Mutation p.T118A 0.53 tolerated(0.05) benign(0.17) TCGA-UF-A71A-01 3 124998000 124998000 T C ZNF148 Missense_Mutation p.Y184C 0.36 deleterious(0) probably_damaging(0.998) TCGA-UF-A71A-01 3 125826019 125826019 G A ALDH1L1 Silent p.F816F 0.14 TCGA-UF-A71A-01 3 12616300 12616300 T C MKRN2 Silent p.L218L 0.66 TCGA-UF-A71A-01 3 127682212 127682212 G A KBTBD12 Missense_Mutation p.G558E 0.18 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 3 130305488 130305488 G A COL6A6 Missense_Mutation p.R1370Q 0.35 tolerated(0.56) benign(0.003) TCGA-UF-A71A-01 3 130737546 130737546 C T ASTE1 Silent p.R439R 0.16 TCGA-UF-A71A-01 3 132075748 132075748 A G ACPP Intron 0.09 TCGA-UF-A71A-01 3 140401413 140401413 C A TRIM42 Silent p.R151R 0.04 TCGA-UF-A71A-01 3 150460311 150460311 G T SIAH2 Missense_Mutation p.L198I 0.37 deleterious(0.04) possibly_damaging(0.847) TCGA-UF-A71A-01 3 151166279 151166279 C A IGSF10 Missense_Mutation p.C497F 0.17 deleterious(0.01) probably_damaging(1) TCGA-UF-A71A-01 3 157178057 157178057 T A VEPH1 Missense_Mutation p.M148L 0.22 tolerated(0.21) benign(0.007) TCGA-UF-A71A-01 3 160000392 160000392 A C IFT80 Missense_Mutation p.L464V 0.16 tolerated(0.51) benign(0.004) TCGA-UF-A71A-01 3 164758727 164758727 C T SI Splice_Site p.X720_splice 0.47 TCGA-UF-A71A-01 3 172166087 172166087 G A GHSR Silent p.P39P 0.07 TCGA-UF-A71A-01 3 179439330 179439330 C T USP13 Silent p.L347L 0.09 TCGA-UF-A71A-01 3 182897937 182897937 G A MCF2L2 Silent p.S1009S 0.11 TCGA-UF-A71A-01 3 196018129 196018129 T C TCTEX1D2 3'UTR 0.64 TCGA-UF-A71A-01 3 20017551 20017551 A T RAB5A Nonsense_Mutation p.R110* 0.32 TCGA-UF-A71A-01 3 39186697 39186697 A G CSRNP1 Missense_Mutation p.F86L 0.33 deleterious(0) probably_damaging(0.997) TCGA-UF-A71A-01 3 52384124 52384124 G T DNAH1 Missense_Mutation p.E882D 0.50 benign(0.001) TCGA-UF-A71A-01 3 99567930 99567930 G A FILIP1L Missense_Mutation p.P864S 0.17 tolerated(0.07) possibly_damaging(0.45) TCGA-UF-A71A-01 4 103987522 103987522 C A SLC9B2 Missense_Mutation p.C78F 0.49 deleterious(0) possibly_damaging(0.655) TCGA-UF-A71A-01 4 115749064 115749064 G - NDST4 Frame_Shift_Del p.R843Efs*22 0.28 TCGA-UF-A71A-01 4 154557505 154557505 C T KIAA0922 Missense_Mutation p.S1537F 0.35 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 4 160277110 160277110 C T RAPGEF2 Missense_Mutation p.P1425L 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UF-A71A-01 4 163032436 163032436 C G FSTL5 Missense_Mutation p.R38T 0.49 deleterious_low_confidence(0.03) probably_damaging(0.942) TCGA-UF-A71A-01 4 46067594 46067594 G T GABRG1 Missense_Mutation p.T110K 0.60 deleterious(0) possibly_damaging(0.666) TCGA-UF-A71A-01 5 118176728 118176728 G T DTWD2 Missense_Mutation p.Q261K 0.29 tolerated(0.07) benign(0.015) TCGA-UF-A71A-01 5 156929861 156929861 C A ADAM19 Missense_Mutation p.G420W 0.23 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 5 158140013 158140013 A T EBF1 Missense_Mutation p.V445E 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.828) TCGA-UF-A71A-01 5 170235604 170235604 G A GABRP Missense_Mutation p.G227E 0.29 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 5 176012980 176012980 C T CDHR2 Silent p.D920D 0.24 TCGA-UF-A71A-01 5 178505879 178505879 C T ZNF354C Missense_Mutation p.S149L 0.23 tolerated(0.26) benign(0.004) TCGA-UF-A71A-01 5 38506107 38506107 A G LIFR Silent p.F397F 0.03 TCGA-UF-A71A-01 5 40843385 40843406 CACTTGGATTTGGAAACCTCTG - CARD6 Frame_Shift_Del p.H139Sfs*49 0.16 TCGA-UF-A71A-01 5 43040113 43040113 A C ANXA2R Silent p.A12A 0.20 TCGA-UF-A71A-01 5 90021381 90021381 A G GPR98 Missense_Mutation p.I3357V 0.31 benign(0.141) TCGA-UF-A71A-01 5 94024258 94024258 T C ANKRD32 Silent p.S723S 0.36 TCGA-UF-A71A-01 6 10984106 10984106 G A ELOVL2 Nonsense_Mutation p.Q267* 0.14 TCGA-UF-A71A-01 6 121544496 121544496 A C TBC1D32 Silent p.S789S 0.04 TCGA-UF-A71A-01 6 130762696 130762696 G C TMEM200A Missense_Mutation p.A377P 0.31 tolerated(0.26) benign(0.226) TCGA-UF-A71A-01 6 132029631 132029631 T - CTAGE9 3'UTR 0.10 TCGA-UF-A71A-01 6 132966643 132966643 C T TAAR1 Missense_Mutation p.G167D 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-UF-A71A-01 6 152757155 152757155 G C SYNE1 Missense_Mutation p.Q1411E 0.35 benign(0.004) TCGA-UF-A71A-01 6 26205070 26205070 G A HIST1H4E Silent p.V66V 0.49 TCGA-UF-A71A-01 6 26217505 26217505 G C HIST1H2AE Silent p.V101V 0.43 TCGA-UF-A71A-01 6 31940148 31940148 T A STK19 Missense_Mutation p.L97H 0.26 deleterious_low_confidence(0) benign(0.146) TCGA-UF-A71A-01 6 41653976 41653976 C G TFEB Splice_Site p.X268_splice 0.48 TCGA-UF-A71A-01 6 41884614 41884614 C T MED20 Silent p.R26R 0.21 TCGA-UF-A71A-01 6 76558166 76558166 A G MYO6 Silent p.E332E 0.32 TCGA-UF-A71A-01 6 89967693 89967693 C A GABRR2 Missense_Mutation p.C365F 0.18 tolerated(0.09) possibly_damaging(0.589) TCGA-UF-A71A-01 7 131830041 131830041 G T PLXNA4 Missense_Mutation p.L1688M 0.34 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 7 132193289 132193289 A G PLXNA4 Missense_Mutation p.V55A 0.09 tolerated(0.55) benign(0.007) TCGA-UF-A71A-01 7 133041131 133041131 C G EXOC4 Missense_Mutation p.P271A 0.04 tolerated(0.05) probably_damaging(0.999) TCGA-UF-A71A-01 7 141464575 141464575 C T TAS2R3 Missense_Mutation p.S206F 0.22 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 7 141464576 141464576 C T TAS2R3 Silent p.S206S 0.22 TCGA-UF-A71A-01 7 143175140 143175140 C A TAS2R41 Missense_Mutation p.Q59K 0.37 deleterious(0) probably_damaging(0.984) TCGA-UF-A71A-01 7 150713811 150713811 G A ATG9B Silent p.L795L 0.19 TCGA-UF-A71A-01 7 154862767 154862767 C T HTR5A-AS1 Missense_Mutation p.A83T 0.16 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-UF-A71A-01 7 21744171 21744171 G A DNAH11 Silent p.K2138K 0.32 TCGA-UF-A71A-01 7 44184732 44184733 CT - GCK 3'UTR 0.37 TCGA-UF-A71A-01 7 74237220 74237220 C T GTF2IRD2 Silent p.E158E 0.33 TCGA-UF-A71A-01 7 75894094 75894094 C A SRRM3 Missense_Mutation p.S229Y 0.13 deleterious(0) unknown(0) TCGA-UF-A71A-01 7 76021343 76021343 C T SRCRB4D Missense_Mutation p.G450E 0.19 tolerated(0.21) benign(0.161) TCGA-UF-A71A-01 7 81339548 81339548 A T HGF Missense_Mutation p.S486T 0.42 tolerated(0.36) benign(0.002) TCGA-UF-A71A-01 7 86415985 86415985 G A GRM3 Missense_Mutation p.A293T 0.36 tolerated(0.62) benign(0.02) TCGA-UF-A71A-01 7 86415986 86415986 C A GRM3 Missense_Mutation p.A293D 0.35 tolerated(0.64) benign(0.064) TCGA-UF-A71A-01 7 87399965 87399965 C T RUNDC3B Missense_Mutation p.T250I 0.43 tolerated(0.19) benign(0.05) TCGA-UF-A71A-01 7 87912155 87912155 C T STEAP4 Missense_Mutation p.G262D 0.28 deleterious(0) probably_damaging(1) TCGA-UF-A71A-01 7 88963958 88963958 G A ZNF804B Silent p.L554L 0.26 TCGA-UF-A71A-01 7 89866297 89866298 - T STEAP2 3'UTR 0.27 TCGA-UF-A71A-01 7 92762251 92762251 C T SAMD9L Missense_Mutation p.A1012T 0.40 tolerated(1) benign(0.024) TCGA-UF-A71A-01 7 94176486 94176486 A T CASD1 Missense_Mutation p.Q571L 0.36 deleterious(0) probably_damaging(0.985) TCGA-UF-A71A-01 7 94539795 94539795 A G PPP1R9A Missense_Mutation p.I124V 0.11 tolerated(0.31) probably_damaging(0.997) TCGA-UF-A71A-01 7 98988690 98988690 C T ARPC1B Silent p.T225T 0.40 TCGA-UF-A71A-01 8 110592198 110592198 C T SYBU Silent p.S188S 0.14 TCGA-UF-A71A-01 8 145622721 145622721 C T CPSF1 Missense_Mutation p.R789Q 0.42 deleterious(0.03) probably_damaging(0.981) TCGA-UF-A71A-01 8 17206556 17206556 G C MTMR7 Missense_Mutation p.P168R 0.27 deleterious(0) probably_damaging(0.991) TCGA-UF-A71A-01 8 30332300 30332300 G C RBPMS Silent p.R24R 0.65 TCGA-UF-A71A-01 8 43147662 43147662 C T POTEA RNA 0.33 TCGA-UF-A71A-01 8 65528525 65528525 G T CYP7B1 Silent p.I191I 0.11 TCGA-UF-A71A-01 8 71508497 71508497 C T TRAM1 Splice_Site p.X162_splice 0.42 TCGA-UF-A71A-01 8 71619234 71619234 C T XKR9 Silent p.F113F 0.18 TCGA-UF-A71A-01 9 111681115 111681115 C T IKBKAP Missense_Mutation p.G239E 0.14 deleterious(0) probably_damaging(0.996) TCGA-UF-A71A-01 9 117399306 117399306 C A C9orf91 Missense_Mutation p.Q208K 0.27 deleterious(0.01) benign(0.007) TCGA-UF-A71A-01 9 125149013 125149013 T C PTGS1 Splice_Site p.X432_splice 0.20 TCGA-UF-A71A-01 9 127674281 127674281 C G GOLGA1 Missense_Mutation p.E290Q 0.25 deleterious(0.02) possibly_damaging(0.544) TCGA-UF-A71A-01 9 140508434 140508434 G T ARRDC1 Intron 0.21 TCGA-UF-A71A-01 9 140637884 140637884 C T EHMT1 Silent p.T295T 0.24 TCGA-UF-A71A-01 9 15506632 15506632 C G PSIP1 Missense_Mutation p.D26H 0.35 deleterious(0) probably_damaging(0.916) TCGA-UF-A71A-01 9 15723736 15723736 A G CCDC171 Missense_Mutation p.N495D 0.36 tolerated(1) benign(0.002) TCGA-UF-A71A-01 9 16435982 16435982 G C BNC2 Missense_Mutation p.S737C 0.06 tolerated(0.05) benign(0.002) TCGA-UF-A71A-01 9 32542340 32542340 G C TOPORS Missense_Mutation p.A728G 0.32 tolerated_low_confidence(0.07) unknown(0) TCGA-UF-A71A-01 9 5921802 5921802 C G KIAA2026 Missense_Mutation p.K1398N 0.39 tolerated(0.3) benign(0.282) TCGA-UF-A71A-01 9 72003134 72003134 C T FAM189A2 Missense_Mutation p.A306V 0.31 tolerated(0.11) benign(0.027) TCGA-UF-A71A-01 9 79634747 79634747 C A FOXB2 Missense_Mutation p.N59K 0.65 deleterious(0) unknown(0) TCGA-UF-A71A-01 9 84531027 84531027 A T SPATA31D5P RNA 0.40 TCGA-UF-A71A-01 9 84547603 84547603 A T RP11-383M4.6 Intron 0.27 TCGA-UF-A71A-01 9 92008515 92008515 G A SEMA4D Missense_Mutation p.P157L 0.30 deleterious(0.01) probably_damaging(1) TCGA-UF-A71A-01 X 106840686 106840686 T C FRMPD3 Missense_Mutation p.V559A 0.27 deleterious(0) benign(0.287) TCGA-UF-A71A-01 X 118220813 118220813 A T KIAA1210 Missense_Mutation p.N1460K 0.34 tolerated(0.05) possibly_damaging(0.556) TCGA-UF-A71A-01 X 118605157 118605157 A G SLC25A5 3'UTR 0.61 TCGA-UF-A71A-01 X 140271069 140271069 C T LDOC1 Silent p.P46P 0.81 TCGA-UF-A71A-01 X 153176046 153176046 C G ARHGAP4 Missense_Mutation p.E652D 0.50 tolerated(0.09) benign(0.167) TCGA-UF-A71A-01 X 27997958 27997958 G T DCAF8L1 Silent p.T498T 0.31 TCGA-UF-A71A-01 X 68748833 68748833 C A FAM155B Intron 0.17 TCGA-UF-A71A-01 X 78618173 78618173 G C ITM2A Missense_Mutation p.L153V 0.82 deleterious(0) probably_damaging(0.998) TCGA-UF-A71A-01 X 79698545 79698545 T A FAM46D Missense_Mutation p.F169L 0.75 deleterious(0.01) probably_damaging(0.963) TCGA-UF-A71B-01 10 123844397 123844397 G C TACC2 Silent p.T794T 0.35 TCGA-UF-A71B-01 10 134896129 134896129 T G GPR123-AS1 3'Flank 0.13 TCGA-UF-A71B-01 10 50530982 50530982 C A C10orf71 Missense_Mutation p.S131Y 0.14 deleterious(0.02) benign(0.178) TCGA-UF-A71B-01 10 8092994 8092994 T C GATA3 5'Flank 0.14 TCGA-UF-A71B-01 10 81319204 81319204 C T SFTPA2 Silent p.L12L 0.17 TCGA-UF-A71B-01 10 81371617 81371617 G A SFTPA1 Silent p.L27L 0.09 TCGA-UF-A71B-01 10 95557169 95557169 A G LGI1 Missense_Mutation p.N428S 0.09 tolerated(0.06) benign(0.065) TCGA-UF-A71B-01 11 128844460 128844460 G A ARHGAP32 Missense_Mutation p.P864S 0.16 deleterious(0.03) probably_damaging(0.982) TCGA-UF-A71B-01 11 129739989 129739989 C T NFRKB Missense_Mutation p.M1002I 0.44 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-UF-A71B-01 11 134023256 134023256 T A NCAPD3 Missense_Mutation p.S1419C 0.39 deleterious(0) benign(0.443) TCGA-UF-A71B-01 11 16208374 16208374 C T SOX6 Silent p.E221E 0.21 TCGA-UF-A71B-01 11 1628933 1628933 C G KRTAP5-3 Missense_Mutation p.C228S 0.14 deleterious(0.04) unknown(0) TCGA-UF-A71B-01 11 33768700 33768700 T C FBXO3 Silent p.T405T 0.32 TCGA-UF-A71B-01 11 5275545 5275545 G A HBG2 Missense_Mutation p.H98Y 0.10 deleterious(0) benign(0.056) TCGA-UF-A71B-01 11 55798328 55798328 T C OR5AS1 Missense_Mutation p.I145T 0.32 deleterious(0.02) benign(0.015) TCGA-UF-A71B-01 11 56044041 56044041 A G OR5T1 Silent p.V309V 0.19 TCGA-UF-A71B-01 11 57003331 57003331 C A APLNR 3'UTR 0.34 TCGA-UF-A71B-01 11 66136979 66136979 C T SLC29A2 Missense_Mutation p.A46T 0.05 tolerated(0.64) benign(0.001) TCGA-UF-A71B-01 11 71164411 71164411 G A NADSYN1 Silent p.L23L 0.46 TCGA-UF-A71B-01 11 71732293 71732293 G A NUMA1 Silent p.D139D 0.08 TCGA-UF-A71B-01 11 77386244 77386244 C T RSF1 Silent p.P1133P 0.50 TCGA-UF-A71B-01 11 8132318 8132318 C A RIC3 Missense_Mutation p.G346V 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.628) TCGA-UF-A71B-01 12 11422597 11422597 G A PRB3 Silent p.L3L 0.39 TCGA-UF-A71B-01 12 119583316 119583316 C A SRRM4 Nonsense_Mutation p.S301* 0.23 TCGA-UF-A71B-01 12 123187644 123187644 G A HCAR2 Missense_Mutation p.R63W 0.27 deleterious(0.02) benign(0.098) TCGA-UF-A71B-01 12 125397148 125397148 A G UBC Silent p.G390G 0.08 TCGA-UF-A71B-01 12 125397154 125397154 C G UBC Silent p.L388L 0.06 TCGA-UF-A71B-01 12 14994042 14994042 C T ART4 Missense_Mutation p.D64N 0.16 deleterious(0) probably_damaging(0.999) TCGA-UF-A71B-01 12 20833114 20833114 C G PDE3A Missense_Mutation p.S1112C 0.15 deleterious(0.02) benign(0.376) TCGA-UF-A71B-01 12 70948979 70948979 C T PTPRB Missense_Mutation p.A1702T 0.19 deleterious(0) probably_damaging(1) TCGA-UF-A71B-01 12 95603800 95603800 T C FGD6 Silent p.K420K 0.28 TCGA-UF-A71B-01 12 99042592 99042592 T - APAF1 Frame_Shift_Del p.Y109* 0.14 TCGA-UF-A71B-01 13 100962097 100962097 A G PCCA Missense_Mutation p.Y455C 0.28 deleterious(0.01) possibly_damaging(0.89) TCGA-UF-A71B-01 13 37401869 37401869 G C RFXAP Missense_Mutation p.Q266H 0.16 tolerated_low_confidence(0.2) probably_damaging(0.977) TCGA-UF-A71B-01 13 46357982 46357982 A G SIAH3 Missense_Mutation p.W116R 0.10 deleterious(0) probably_damaging(1) TCGA-UF-A71B-01 13 61986738 61986738 C A PCDH20 Missense_Mutation p.E498D 0.22 deleterious(0) probably_damaging(0.999) TCGA-UF-A71B-01 13 73320113 73320113 G C BORA Missense_Mutation p.S257T 0.22 tolerated(0.21) benign(0.287) TCGA-UF-A71B-01 14 105359965 105359965 G A CEP170B Missense_Mutation p.A1382T 0.10 tolerated(0.26) benign(0.016) TCGA-UF-A71B-01 14 20215682 20215683 - T OR4Q3 Frame_Shift_Ins p.Y35Lfs*37 0.13 TCGA-UF-A71B-01 14 23902406 23902406 G A MYH7 Nonsense_Mutation p.Q78* 0.24 TCGA-UF-A71B-01 14 45373697 45373697 G A C14orf28 Silent p.A238A 0.16 TCGA-UF-A71B-01 15 24922482 24922482 G A NPAP1 Missense_Mutation p.A490T 0.23 tolerated(0.91) benign(0.064) TCGA-UF-A71B-01 15 41870397 41870397 C T TYRO3 Nonsense_Mutation p.Q866* 0.16 TCGA-UF-A71B-01 15 49531556 49531556 C T GALK2 Silent p.L166L 0.32 TCGA-UF-A71B-01 15 51914710 51914710 G A DMXL2 Silent p.V11V 0.30 TCGA-UF-A71B-01 15 62456205 62456205 C A C2CD4B Missense_Mutation p.D327Y 0.26 deleterious(0) possibly_damaging(0.702) TCGA-UF-A71B-01 15 65989607 65989607 G A DENND4A Missense_Mutation p.S982F 0.10 deleterious(0.02) possibly_damaging(0.795) TCGA-UF-A71B-01 15 77406606 77406606 C G PEAK1 Silent p.L1711L 0.30 TCGA-UF-A71B-01 16 20043419 20043419 T C GPR139 Missense_Mutation p.T234A 0.23 deleterious(0) probably_damaging(0.992) TCGA-UF-A71B-01 16 57406425 57406425 C T CX3CL1 5'UTR 0.28 TCGA-UF-A71B-01 16 624441 624441 G A PIGQ Missense_Mutation p.E123K 0.23 tolerated_low_confidence(0.06) benign(0.017) TCGA-UF-A71B-01 16 72048493 72048493 G A DHODH Missense_Mutation p.S119N 0.24 deleterious(0) probably_damaging(0.976) TCGA-UF-A71B-01 17 1840240 1840240 G A RTN4RL1 Silent p.D292D 0.24 TCGA-UF-A71B-01 17 27031202 27031202 C T PROCA1 Missense_Mutation p.A129T 0.30 deleterious(0.03) possibly_damaging(0.652) TCGA-UF-A71B-01 17 34171794 34171794 C G TAF15 Missense_Mutation p.D497E 0.13 unknown(0) TCGA-UF-A71B-01 17 34587271 34587271 G A TBC1D3C Nonsense_Mutation p.R162* 0.15 TCGA-UF-A71B-01 17 34871782 34871782 G A MYO19 Missense_Mutation p.P156S 0.26 tolerated(0.78) benign(0.067) TCGA-UF-A71B-01 17 39538023 39538023 C A KRT34 Missense_Mutation p.A167S 0.15 tolerated(0.62) benign(0.07) TCGA-UF-A71B-01 17 43246481 43246481 G A HEXIM2 Missense_Mutation p.E56K 0.26 tolerated(0.1) benign(0.149) TCGA-UF-A71B-01 17 47219490 47219490 G A B4GALNT2 Silent p.A163A 0.26 TCGA-UF-A71B-01 17 5086290 5086290 C G ZNF594 Missense_Mutation p.R421T 0.24 tolerated(0.66) possibly_damaging(0.869) TCGA-UF-A71B-01 17 62499311 62499311 T C DDX5 Missense_Mutation p.I269V 0.24 deleterious(0.04) benign(0.423) TCGA-UF-A71B-01 17 66422259 66422259 G A WIPI1 Missense_Mutation p.A417V 0.27 tolerated(0.05) probably_damaging(0.978) TCGA-UF-A71B-01 17 73813557 73813557 G A UNK Missense_Mutation p.E419K 0.18 tolerated(0.05) probably_damaging(0.991) TCGA-UF-A71B-01 17 74733220 74733221 - GA SRSF2 Frame_Shift_Ins p.P8Lfs*7 0.30 TCGA-UF-A71B-01 17 7577157 7577157 T G TP53 Splice_Site p.X261_splice 0.17 TCGA-UF-A71B-01 17 8025100 8025100 G A HES7 Missense_Mutation p.P161L 0.40 tolerated(0.26) probably_damaging(0.991) TCGA-UF-A71B-01 17 8789598 8789598 G T PIK3R5 Silent p.I692I 0.30 TCGA-UF-A71B-01 18 65180510 65180510 A T DSEL Missense_Mutation p.Y456N 0.10 tolerated(0.08) possibly_damaging(0.864) TCGA-UF-A71B-01 18 688598 688598 T C ENOSF1 Missense_Mutation p.Q231R 0.06 tolerated(0.06) benign(0) TCGA-UF-A71B-01 19 11892651 11892651 A G ZNF441 Missense_Mutation p.Y671C 0.33 deleterious(0.01) possibly_damaging(0.524) TCGA-UF-A71B-01 19 14581479 14581479 C T PKN1 Silent p.I849I 0.17 TCGA-UF-A71B-01 19 20117799 20117799 T A ZNF682 Missense_Mutation p.K171I 0.22 deleterious(0) probably_damaging(0.986) TCGA-UF-A71B-01 19 3614518 3614519 TA - CACTIN Frame_Shift_Del p.Y411Qfs*44 0.17 TCGA-UF-A71B-01 19 43233953 43233953 T C PSG3 Missense_Mutation p.Y322C 0.25 tolerated(0.17) possibly_damaging(0.704) TCGA-UF-A71B-01 19 53884803 53884803 A T ZNF525 Missense_Mutation p.E324V 0.26 deleterious(0) possibly_damaging(0.728) TCGA-UF-A71B-01 19 54416163 54416163 C T CACNG7 Silent p.I26I 0.27 TCGA-UF-A71B-01 19 54485394 54485394 C T CACNG8 Missense_Mutation p.P190L 0.17 tolerated(0.1) benign(0.008) TCGA-UF-A71B-01 19 55593237 55593237 G A EPS8L1 Missense_Mutation p.G291S 0.26 tolerated(0.67) benign(0.044) TCGA-UF-A71B-01 1 152128693 152128693 G A RPTN Silent p.H294H 0.25 TCGA-UF-A71B-01 1 169100811 169100811 T C ATP1B1 3'UTR 0.29 TCGA-UF-A71B-01 1 185958709 185958709 T C HMCN1 Silent p.S1046S 0.32 TCGA-UF-A71B-01 1 209953904 209953904 G C TRAF3IP3 Missense_Mutation p.D468H 0.43 deleterious(0) probably_damaging(0.976) TCGA-UF-A71B-01 1 216251525 216251525 G A USH2A Silent p.S1826S 0.09 TCGA-UF-A71B-01 1 248059008 248059008 A C OR2W3 Silent p.V40V 0.35 TCGA-UF-A71B-01 1 32148570 32148570 C T COL16A1 Missense_Mutation p.V835M 0.21 unknown(0) TCGA-UF-A71B-01 1 52901042 52901042 C T ZCCHC11 Missense_Mutation p.E1420K 0.06 tolerated(0.08) possibly_damaging(0.5) TCGA-UF-A71B-01 1 57480848 57480848 G A DAB1 Silent p.L384L 0.31 TCGA-UF-A71B-01 1 5934609 5934609 G T NPHP4 Silent p.L1051L 0.23 TCGA-UF-A71B-01 20 31601626 31601626 C A BPIFB2 Missense_Mutation p.P107T 0.22 tolerated(0.18) benign(0.088) TCGA-UF-A71B-01 20 34611605 34611605 C T CNBD2 Missense_Mutation p.R447W 0.11 deleterious(0) probably_damaging(0.993) TCGA-UF-A71B-01 20 3654462 3654462 G A ADAM33 Missense_Mutation p.L279F 0.42 deleterious(0) probably_damaging(1) TCGA-UF-A71B-01 20 41306562 41306562 C T PTPRT Missense_Mutation p.G366D 0.04 deleterious(0.01) probably_damaging(1) TCGA-UF-A71B-01 20 45224886 45224886 A T SLC13A3 Missense_Mutation p.L235H 0.25 tolerated(0.08) probably_damaging(0.995) TCGA-UF-A71B-01 20 54972508 54972508 A T CSTF1 Missense_Mutation p.R139W 0.25 deleterious(0) possibly_damaging(0.887) TCGA-UF-A71B-01 20 60776031 60776031 G A MTG2 Silent p.L373L 0.09 TCGA-UF-A71B-01 20 7964485 7964485 T G TMX4 Missense_Mutation p.E212A 0.26 deleterious(0.01) possibly_damaging(0.876) TCGA-UF-A71B-01 21 40778134 40778134 C T LCA5L Missense_Mutation p.E563K 0.11 tolerated(0.34) benign(0.015) TCGA-UF-A71B-01 21 46930061 46930061 G A COL18A1 Silent p.A1373A 0.50 TCGA-UF-A71B-01 21 47663601 47663601 A C MCM3AP Missense_Mutation p.Y1692D 0.19 deleterious(0) probably_damaging(0.996) TCGA-UF-A71B-01 22 19384466 19384466 A T HIRA Silent p.I166I 0.18 TCGA-UF-A71B-01 22 19969065 19969065 A T ARVCF Missense_Mutation p.F189I 0.17 tolerated(0.07) benign(0.216) TCGA-UF-A71B-01 22 23603613 23603613 C A BCR Silent p.I546I 0.47 TCGA-UF-A71B-01 22 28146992 28146992 C T MN1 Missense_Mutation p.A1292T 0.19 benign(0.009) TCGA-UF-A71B-01 22 31867888 31867888 T C EIF4ENIF1 Missense_Mutation p.I38V 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-UF-A71B-01 22 51044054 51044054 G A MAPK8IP2 Missense_Mutation p.E635K 0.22 deleterious(0) possibly_damaging(0.721) TCGA-UF-A71B-01 2 130725847 130725847 C T RAB6C-AS1 RNA 0.25 TCGA-UF-A71B-01 2 143799765 143799765 G A KYNU 3'UTR 0.30 TCGA-UF-A71B-01 2 154996991 154996991 G A GALNT13 Missense_Mutation p.R95K 0.20 deleterious(0) possibly_damaging(0.677) TCGA-UF-A71B-01 2 165555991 165555991 T C COBLL1 Silent p.V532V 0.22 TCGA-UF-A71B-01 2 168102545 168102545 T C XIRP2 Missense_Mutation p.I1548T 0.07 possibly_damaging(0.89) TCGA-UF-A71B-01 2 170090032 170090032 G T LRP2 Missense_Mutation p.R1663S 0.21 benign(0.003) TCGA-UF-A71B-01 2 170598008 170598008 A G KLHL23 Missense_Mutation p.I443V 0.22 tolerated(0.55) benign(0.002) TCGA-UF-A71B-01 2 171693381 171693381 C T GAD1 Missense_Mutation p.A209V 0.32 tolerated(0.2) probably_damaging(0.943) TCGA-UF-A71B-01 2 172305291 172305291 T C DCAF17 Missense_Mutation p.L141P 0.22 deleterious(0) probably_damaging(1) TCGA-UF-A71B-01 2 178098807 178098807 T C NFE2L2 Missense_Mutation p.T80A 0.10 deleterious(0) probably_damaging(0.999) TCGA-UF-A71B-01 2 207825638 207825638 C A CPO Silent p.L182L 0.23 TCGA-UF-A71B-01 2 209188978 209188978 G T PIKFYVE Missense_Mutation p.G768V 0.27 deleterious(0) probably_damaging(1) TCGA-UF-A71B-01 2 21228981 21228981 C T APOB Missense_Mutation p.A3587T 0.13 possibly_damaging(0.885) TCGA-UF-A71B-01 2 225379381 225379381 G A CUL3 Nonsense_Mutation p.Q163* 0.21 TCGA-UF-A71B-01 2 241621714 241621714 G A AQP12B Missense_Mutation p.R181W 0.18 deleterious(0.02) benign(0.023) TCGA-UF-A71B-01 2 30454547 30454547 G C LBH 5'UTR 0.12 TCGA-UF-A71B-01 2 74689354 74689354 T G MOGS Missense_Mutation p.H521P 0.11 tolerated(0.23) benign(0.334) TCGA-UF-A71B-01 2 90078112 90078112 G A IGKV3D-20 Missense_Mutation p.S50N 0.08 tolerated(0.21) benign(0.051) TCGA-UF-A71B-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.23 deleterious(0.04) probably_damaging(0.96) TCGA-UF-A71B-01 3 184294876 184294876 G A EPHB3 Missense_Mutation p.R420H 0.09 tolerated(0.15) benign(0.009) TCGA-UF-A71B-01 3 46000054 46000054 G A FYCO1 Silent p.H1215H 0.37 TCGA-UF-A71B-01 4 155026 155026 C G ZNF718 RNA 0.42 TCGA-UF-A71B-01 4 15529187 15529187 C T CC2D2A Nonsense_Mutation p.R423* 0.23 TCGA-UF-A71B-01 4 175897038 175897038 G A ADAM29 Missense_Mutation p.G121E 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-UF-A71B-01 4 185678047 185678047 G A ACSL1 3'UTR 0.25 TCGA-UF-A71B-01 4 46979462 46979462 T C GABRA4 Silent p.R153R 0.39 TCGA-UF-A71B-01 4 47559834 47559834 C T ATP10D Missense_Mutation p.L660F 0.20 tolerated(0.12) benign(0.094) TCGA-UF-A71B-01 4 69692180 69692180 G A UGT2B10 Missense_Mutation p.R351Q 0.03 tolerated(0.2) benign(0.013) TCGA-UF-A71B-01 4 76439452 76439452 T G RCHY1 Silent p.R15R 0.08 TCGA-UF-A71B-01 5 11022970 11022970 C G CTNND2 Silent p.V970V 0.05 TCGA-UF-A71B-01 5 127622436 127622436 C T FBN2 Missense_Mutation p.R2329Q 0.12 tolerated(0.44) benign(0.124) TCGA-UF-A71B-01 5 140594564 140594564 G T PCDHB13 Missense_Mutation p.G290V 0.38 tolerated_low_confidence(0.52) benign(0) TCGA-UF-A71B-01 5 140871102 140871102 G A PCDHGC5 Silent p.R765R 0.27 TCGA-UF-A71B-01 5 154396174 154396174 G T KIF4B Nonsense_Mutation p.E919* 0.24 TCGA-UF-A71B-01 5 156723768 156723768 T C CYFIP2 Missense_Mutation p.F99L 0.35 tolerated(0.12) benign(0.043) TCGA-UF-A71B-01 5 176637097 176637097 G A NSD1 Missense_Mutation p.G566E 0.13 tolerated_low_confidence(1) benign(0.008) TCGA-UF-A71B-01 5 38523656 38523656 C G LIFR Missense_Mutation p.L142F 0.36 tolerated(0.07) benign(0.02) TCGA-UF-A71B-01 5 5462044 5462044 G C KIAA0947 Missense_Mutation p.R866T 0.31 deleterious(0.01) probably_damaging(0.928) TCGA-UF-A71B-01 5 65350190 65350190 G T ERBB2IP Missense_Mutation p.S1015I 0.34 deleterious(0.01) possibly_damaging(0.704) TCGA-UF-A71B-01 6 117710803 117710803 A G ROS1 Missense_Mutation p.I490T 0.19 deleterious(0.03) benign(0.05) TCGA-UF-A71B-01 6 117900158 117900158 C T GOPC Missense_Mutation p.V119I 0.07 tolerated(0.08) benign(0.358) TCGA-UF-A71B-01 6 129835643 129835643 G A LAMA2 Silent p.E3038E 0.10 TCGA-UF-A71B-01 6 17688742 17688742 G A NUP153 Silent p.S73S 0.27 TCGA-UF-A71B-01 6 26225802 26225802 G C HIST1H3E 3'UTR 0.25 TCGA-UF-A71B-01 6 28121663 28121663 A G ZKSCAN8 Silent p.Q535Q 0.10 TCGA-UF-A71B-01 6 36978763 36978763 G A FGD2 Silent p.K105K 0.26 TCGA-UF-A71B-01 6 76333615 76333615 G A SENP6 Splice_Site p.X49_splice 0.18 TCGA-UF-A71B-01 6 79708071 79708071 C G PHIP Missense_Mutation p.E639D 0.26 tolerated(0.4) benign(0.001) TCGA-UF-A71B-01 6 80744740 80744748 TATAAAATA ATTAAATT TTK Frame_Shift_Del p.I552Lfs*4 0.16 TCGA-UF-A71B-01 7 142919351 142919351 G A AC073342.1 Missense_Mutation p.H4Y 0.31 unknown(0) TCGA-UF-A71B-01 7 148876142 148876142 C G ZNF398 Missense_Mutation p.A393G 0.21 tolerated(0.34) benign(0.005) TCGA-UF-A71B-01 7 149191090 149191090 C T ZNF746 Silent p.L132L 0.25 TCGA-UF-A71B-01 7 150754047 150754047 C T CDK5 Missense_Mutation p.A48T 0.24 deleterious(0.01) probably_damaging(1) TCGA-UF-A71B-01 7 155093399 155093399 C T INSIG1 Missense_Mutation p.A179V 0.16 deleterious(0.05) benign(0.21) TCGA-UF-A71B-01 7 30066235 30066235 G T FKBP14 5'UTR 0.31 TCGA-UF-A71B-01 7 38475887 38475887 G C AMPH Missense_Mutation p.H373Q 0.19 tolerated(0.44) possibly_damaging(0.905) TCGA-UF-A71B-01 7 39247049 39247049 C T POU6F2 Missense_Mutation p.P114L 0.18 deleterious_low_confidence(0.03) benign(0.432) TCGA-UF-A71B-01 7 63726627 63726627 C G ZNF679 Missense_Mutation p.H206D 0.31 deleterious(0.02) benign(0.224) TCGA-UF-A71B-01 8 101299800 101299800 G A RNF19A Silent p.Y201Y 0.29 TCGA-UF-A71B-01 8 10470230 10470230 C T RP1L1 Missense_Mutation p.G460S 0.06 benign(0.14) TCGA-UF-A71B-01 8 121282323 121282323 G A COL14A1 Nonsense_Mutation p.W1041* 0.17 TCGA-UF-A71B-01 8 135614102 135614102 G A ZFAT Silent p.H620H 0.25 TCGA-UF-A71B-01 8 139611102 139611102 C A COL22A1 Nonsense_Mutation p.G1409* 0.18 TCGA-UF-A71B-01 8 143763539 143763539 G A PSCA Missense_Mutation p.G112S 0.08 tolerated(0.96) unknown(0) TCGA-UF-A71B-01 8 30889481 30889481 C T PURG Missense_Mutation p.R273K 0.19 tolerated(0.05) possibly_damaging(0.889) TCGA-UF-A71B-01 9 101832192 101832192 A T COL15A1 3'UTR 0.09 TCGA-UF-A71B-01 9 117241008 117241008 G T DFNB31 Missense_Mutation p.A221E 0.19 deleterious(0.02) benign(0.131) TCGA-UF-A71B-01 9 120476969 120476969 G T TLR4 3'UTR 0.21 TCGA-UF-A71B-01 9 139113676 139113676 T A QSOX2 Missense_Mutation p.I263F 0.26 tolerated(0.17) benign(0.049) TCGA-UF-A71B-01 9 140510463 140510465 CCA - C9orf37 In_Frame_Del p.W63del 0.35 TCGA-UF-A71B-01 9 18721646 18721646 G A ADAMTSL1 Silent p.L663L 0.33 TCGA-UF-A71B-01 9 20929552 20929552 G T FOCAD Missense_Mutation p.A1092S 0.29 deleterious(0.02) possibly_damaging(0.713) TCGA-UF-A71B-01 9 27950061 27950061 G T LINGO2 Silent p.L203L 0.27 TCGA-UF-A71B-01 9 36882055 36882055 G C PAX5 Missense_Mutation p.P320A 0.41 deleterious(0) benign(0.34) TCGA-UF-A71B-01 9 74764516 74764516 G A GDA Missense_Mutation p.R14Q 0.31 tolerated(0.17) possibly_damaging(0.486) TCGA-UF-A71B-01 9 94485948 94485948 G A ROR2 Missense_Mutation p.A943V 0.16 deleterious_low_confidence(0) benign(0.355) TCGA-UF-A71B-01 9 97718211 97718211 C T C9orf3 Missense_Mutation p.L596F 0.23 deleterious(0.05) probably_damaging(0.98) TCGA-UF-A71B-01 X 133087078 133087078 T C GPC3 Silent p.Q112Q 0.35 TCGA-UF-A71B-01 X 135592335 135592335 G A HTATSF1 Missense_Mutation p.R340H 0.26 deleterious(0) probably_damaging(0.999) TCGA-UF-A71B-01 X 153184627 153184627 G A ARHGAP4 Silent p.D304D 0.41 TCGA-UF-A71B-01 X 16717105 16717105 A G CTPS2 Missense_Mutation p.I93T 0.22 deleterious(0) probably_damaging(0.986) TCGA-UF-A71B-01 X 50376688 50376688 A G SHROOM4 Silent p.H795H 0.53 TCGA-UF-A71B-01 X 79281235 79281235 C A TBX22 Missense_Mutation p.R198S 0.45 deleterious(0) probably_damaging(0.95) TCGA-UF-A71B-01 X 90691385 90691385 A G PABPC5 Missense_Mutation p.Y270C 0.25 deleterious(0.04) probably_damaging(0.981) TCGA-UF-A71B-01 X 92965177 92965177 A C FAM133A 3'UTR 0.13 TCGA-UF-A71D-01 10 118386421 118386421 G A PNLIPRP2 Missense_Mutation p.R126K 0.17 tolerated(1) benign(0.002) TCGA-UF-A71D-01 10 119015117 119015117 G A SLC18A2 Missense_Mutation p.G282R 0.22 deleterious(0) benign(0.314) TCGA-UF-A71D-01 10 124672315 124672315 C G FAM24A Missense_Mutation p.H55D 0.25 tolerated(0.62) possibly_damaging(0.581) TCGA-UF-A71D-01 10 124697575 124697575 T C C10orf88 Missense_Mutation p.N250S 0.20 tolerated(0.14) benign(0.001) TCGA-UF-A71D-01 10 126631073 126631073 G C ZRANB1 Missense_Mutation p.R4P 0.24 tolerated(0.37) benign(0.166) TCGA-UF-A71D-01 10 129902617 129902617 A C MKI67 Missense_Mutation p.L2496R 0.17 tolerated(0.07) benign(0.255) TCGA-UF-A71D-01 10 17276720 17276720 G A VIM Missense_Mutation p.R304Q 0.53 deleterious(0) probably_damaging(0.991) TCGA-UF-A71D-01 10 21141477 21141477 A T NEBL Missense_Mutation p.S335R 0.59 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 10 22700008 22700008 G A SPAG6 Missense_Mutation p.G455S 0.11 tolerated(0.08) possibly_damaging(0.572) TCGA-UF-A71D-01 10 38658926 38658926 A G HSD17B7P2 RNA 0.20 TCGA-UF-A71D-01 10 48385935 48385935 C T RBP3 Missense_Mutation p.G1053S 0.17 tolerated(0.41) benign(0) TCGA-UF-A71D-01 10 55700686 55700686 T C PCDH15 Missense_Mutation p.I1058V 0.37 tolerated(0.28) benign(0.058) TCGA-UF-A71D-01 10 55996636 55996636 C G PCDH15 Missense_Mutation p.R311P 0.31 deleterious(0.01) possibly_damaging(0.865) TCGA-UF-A71D-01 10 63983025 63983025 C G RTKN2 Missense_Mutation p.K251N 0.18 deleterious(0) possibly_damaging(0.821) TCGA-UF-A71D-01 10 6525468 6525468 C T PRKCQ Silent p.L371L 0.22 TCGA-UF-A71D-01 10 71103586 71103586 G A HK1 Missense_Mutation p.D27N 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-UF-A71D-01 10 87373344 87373344 G T GRID1 Missense_Mutation p.H807Q 0.30 tolerated(0.06) benign(0.03) TCGA-UF-A71D-01 10 90986712 90986712 G C LIPA Missense_Mutation p.L160V 0.32 tolerated(0.74) benign(0.031) TCGA-UF-A71D-01 10 94826034 94826034 G A CYP26C1 Missense_Mutation p.E395K 0.29 deleterious(0.01) possibly_damaging(0.823) TCGA-UF-A71D-01 10 98129948 98129948 G T TLL2 Nonsense_Mutation p.Y929* 0.32 TCGA-UF-A71D-01 11 102650092 102650092 C A MMP10 Missense_Mutation p.R116S 0.46 deleterious(0.04) probably_damaging(0.94) TCGA-UF-A71D-01 11 102818643 102818643 C G MMP13 Silent p.L396L 0.25 TCGA-UF-A71D-01 11 103027225 103027225 C T DYNC2H1 Nonsense_Mutation p.Q1285* 0.16 TCGA-UF-A71D-01 11 10327307 10327307 C T ADM Silent p.D20D 0.32 TCGA-UF-A71D-01 11 105481710 105481710 A T GRIA4 5'UTR 0.12 TCGA-UF-A71D-01 11 105795149 105795149 C G GRIA4 Missense_Mutation p.L501V 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-UF-A71D-01 11 111156520 111156520 G A C11orf53 Missense_Mutation p.S151N 0.16 tolerated(0.23) benign(0.009) TCGA-UF-A71D-01 11 114117978 114117978 C A ZBTB16 Silent p.L561L 0.50 TCGA-UF-A71D-01 11 114393791 114393791 T C NXPE1 Silent p.T164T 0.15 TCGA-UF-A71D-01 11 118521236 118521250 CCTTTCCTATTATGT - PHLDB1 In_Frame_Del p.L1287_V1291del 0.32 TCGA-UF-A71D-01 11 123601255 123601255 G A ZNF202 Silent p.G114G 0.17 TCGA-UF-A71D-01 11 124412780 124412780 C T OR8B12 Missense_Mutation p.M257I 0.13 deleterious_low_confidence(0.03) benign(0.021) TCGA-UF-A71D-01 11 129734650 129734650 C T NFRKB Silent p.P1315P 0.21 TCGA-UF-A71D-01 11 134239780 134239780 G A GLB1L2 Splice_Site p.X370_splice 0.25 TCGA-UF-A71D-01 11 22277018 22277018 C G ANO5 Missense_Mutation p.P428A 0.10 deleterious(0.01) probably_damaging(1) TCGA-UF-A71D-01 11 28057765 28057765 G A KIF18A Missense_Mutation p.R799W 0.17 deleterious(0) possibly_damaging(0.863) TCGA-UF-A71D-01 11 32439122 32439122 C - WT1 Splice_Site p.X317_splice 0.11 TCGA-UF-A71D-01 11 55861561 55861561 C A OR8I2 Missense_Mutation p.Q260K 0.15 tolerated(1) benign(0.171) TCGA-UF-A71D-01 11 56230518 56230518 C T OR5M9 Silent p.R120R 0.19 TCGA-UF-A71D-01 11 56510691 56510691 C T OR9G4 Silent p.L199L 0.14 TCGA-UF-A71D-01 11 58317311 58317311 C T LPXN Nonsense_Mutation p.W235* 0.17 TCGA-UF-A71D-01 11 60234504 60234504 T A MS4A1 Missense_Mutation p.W216R 0.22 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 11 61031985 61031985 G T VWCE Missense_Mutation p.P735H 0.20 deleterious(0.02) possibly_damaging(0.8) TCGA-UF-A71D-01 11 62288724 62288724 C T AHNAK Missense_Mutation p.D4389N 0.12 benign(0.036) TCGA-UF-A71D-01 11 62361277 62361277 G A MTA2 3'UTR 0.13 TCGA-UF-A71D-01 11 62489693 62489693 C T HNRNPUL2 Missense_Mutation p.E419K 0.37 tolerated(0.11) benign(0.204) TCGA-UF-A71D-01 11 65392959 65392959 C T PCNXL3 Missense_Mutation p.P1038L 0.12 deleterious(0) probably_damaging(0.992) TCGA-UF-A71D-01 11 70281209 70281209 G T CTTN Missense_Mutation p.G495W 0.08 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 11 73007627 73007627 G C P2RY6 Missense_Mutation p.E22Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 11 77921127 77921127 G A USP35 Silent p.P742P 0.12 TCGA-UF-A71D-01 11 88027054 88027054 A C CTSC 3'UTR 0.15 TCGA-UF-A71D-01 11 88780522 88780522 T A GRM5 Silent p.S173S 0.08 TCGA-UF-A71D-01 11 88911788 88911788 C A TYR Missense_Mutation p.Q223K 0.22 deleterious(0.02) benign(0.394) TCGA-UF-A71D-01 11 92534474 92534474 T C FAT3 Silent p.I2765I 0.22 TCGA-UF-A71D-01 11 92715054 92715054 G T MTNR1B Missense_Mutation p.R222L 0.38 deleterious(0.02) benign(0.383) TCGA-UF-A71D-01 12 101757450 101757450 G T UTP20 Missense_Mutation p.D1963Y 0.15 deleterious(0) probably_damaging(0.936) TCGA-UF-A71D-01 12 105443729 105443729 A G ALDH1L2 Missense_Mutation p.V548A 0.28 tolerated(0.06) benign(0.411) TCGA-UF-A71D-01 12 109629428 109629428 G T ACACB Missense_Mutation p.V719L 0.25 tolerated(0.09) benign(0.012) TCGA-UF-A71D-01 12 109719222 109719222 G - FOXN4 Frame_Shift_Del p.F428Lfs*11 0.11 TCGA-UF-A71D-01 12 110230550 110230550 C T TRPV4 Silent p.V577V 0.17 TCGA-UF-A71D-01 12 113707570 113707570 G A TPCN1 Missense_Mutation p.R295Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 12 120876252 120876252 C T AL021546.6 Silent p.Y35Y 0.26 TCGA-UF-A71D-01 12 121880319 121880319 C T KDM2B Silent p.S975S 0.20 TCGA-UF-A71D-01 12 122079045 122079045 C T ORAI1 Silent p.H136H 0.17 TCGA-UF-A71D-01 12 130647702 130647702 C G FZD10 Missense_Mutation p.A72G 0.10 tolerated(0.32) probably_damaging(0.998) TCGA-UF-A71D-01 12 130841546 130841546 G A PIWIL1 Nonsense_Mutation p.W496* 0.33 TCGA-UF-A71D-01 12 130963555 130963555 G T RIMBP2 Silent p.R2R 0.29 TCGA-UF-A71D-01 12 13128125 13128125 G A HEBP1 3'UTR 0.18 TCGA-UF-A71D-01 12 132681769 132681769 G T GALNT9 Silent p.G199G 0.40 TCGA-UF-A71D-01 12 18854659 18854659 C T PLCZ1 Missense_Mutation p.E306K 0.22 tolerated(0.09) benign(0.115) TCGA-UF-A71D-01 12 20801742 20801742 C T PDE3A Missense_Mutation p.H896Y 0.29 deleterious(0) possibly_damaging(0.845) TCGA-UF-A71D-01 12 20807067 20807067 G A PDE3A Missense_Mutation p.D1038N 0.33 tolerated(0.05) benign(0.368) TCGA-UF-A71D-01 12 22646170 22646170 A C C2CD5 Missense_Mutation p.S417A 0.19 tolerated(0.14) benign(0.141) TCGA-UF-A71D-01 12 23687084 23687084 G A SOX5 3'UTR 0.19 TCGA-UF-A71D-01 12 48596810 48596810 C T OR10AD1 Missense_Mutation p.R89K 0.33 tolerated(1) benign(0.001) TCGA-UF-A71D-01 12 52629034 52629034 C T KRT7 Silent p.I140I 0.28 TCGA-UF-A71D-01 12 52840965 52840965 G A KRT6B 3'UTR 0.05 TCGA-UF-A71D-01 12 53233635 53233635 C A KRT78 Missense_Mutation p.C394F 0.18 deleterious(0) possibly_damaging(0.46) TCGA-UF-A71D-01 12 53876790 53876790 C T MAP3K12 Silent p.V599V 0.33 TCGA-UF-A71D-01 12 55945240 55945240 C A OR6C4 Missense_Mutation p.P77H 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UF-A71D-01 12 57107449 57107449 G C NACA Missense_Mutation p.L795V 0.08 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-UF-A71D-01 12 66641592 66641592 C T IRAK3 Missense_Mutation p.P478S 0.18 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 12 70072666 70072666 C A BEST3 Missense_Mutation p.M163I 0.16 deleterious(0.01) possibly_damaging(0.525) TCGA-UF-A71D-01 12 75672699 75672699 T A CAPS2 Intron 0.25 TCGA-UF-A71D-01 12 75672777 75672777 C A CAPS2 Intron 0.21 TCGA-UF-A71D-01 12 9229400 9229400 T A A2M Nonsense_Mutation p.K1162* 0.28 TCGA-UF-A71D-01 13 102029375 102029375 C T NALCN Missense_Mutation p.M136I 0.32 tolerated(0.25) benign(0.009) TCGA-UF-A71D-01 13 103515434 103515434 G A BIVM-ERCC5 Silent p.S1071S 0.15 TCGA-UF-A71D-01 13 108518400 108518400 A T FAM155A Missense_Mutation p.F182Y 0.23 deleterious(0) probably_damaging(0.979) TCGA-UF-A71D-01 13 109475564 109475564 C A MYO16 Silent p.T323T 0.30 TCGA-UF-A71D-01 13 110434604 110434604 G A IRS2 Missense_Mutation p.P1266L 0.26 tolerated_low_confidence(0.22) benign(0) TCGA-UF-A71D-01 13 113793721 113793721 G A F10 Missense_Mutation p.D103N 0.17 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 13 115004938 115004938 C A CDC16 Silent p.S118S 0.23 TCGA-UF-A71D-01 13 25453334 25453334 C T RNF17 Missense_Mutation p.P1595S 0.39 tolerated(0.06) probably_damaging(0.968) TCGA-UF-A71D-01 13 28866542 28866542 A G PAN3 Silent p.K849K 0.42 TCGA-UF-A71D-01 13 31722151 31722151 C T HSPH1 Silent p.E441E 0.09 TCGA-UF-A71D-01 13 33703941 33703942 - A STARD13 Frame_Shift_Ins p.L291Ffs*9 0.27 TCGA-UF-A71D-01 13 75930353 75930353 C A TBC1D4 Missense_Mutation p.C402F 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-UF-A71D-01 14 106641567 106641567 G T IGHV1-18 Missense_Mutation p.A116E 0.11 deleterious(0.02) benign(0.231) TCGA-UF-A71D-01 14 107178905 107178905 G T IGHV2-70 Missense_Mutation p.S91Y 0.17 deleterious(0.02) possibly_damaging(0.891) TCGA-UF-A71D-01 14 20295760 20295760 A G OR4N2 Silent p.S51S 0.05 TCGA-UF-A71D-01 14 21541242 21541242 C T ARHGEF40 Silent p.L14L 0.07 TCGA-UF-A71D-01 14 23444314 23444314 C G AJUBA Splice_Site p.X414_splice 0.39 TCGA-UF-A71D-01 14 29237395 29237395 G A FOXG1 Missense_Mutation p.G304S 0.15 tolerated(0.21) benign(0.099) TCGA-UF-A71D-01 14 33165313 33165313 C A AKAP6 Nonsense_Mutation p.Y999* 0.11 TCGA-UF-A71D-01 14 44973940 44973940 C A FSCB Missense_Mutation p.A751S 0.39 tolerated(0.2) unknown(0) TCGA-UF-A71D-01 14 44973941 44973941 C T FSCB Silent p.E750E 0.38 TCGA-UF-A71D-01 14 45431658 45431658 C T FAM179B Missense_Mutation p.P12S 0.14 tolerated_low_confidence(0.06) unknown(0) TCGA-UF-A71D-01 14 47504486 47504486 G A MDGA2 Missense_Mutation p.P516L 0.36 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 14 50053079 50053079 T A RPS29 5'UTR 0.07 TCGA-UF-A71D-01 14 72190465 72190465 C T SIPA1L1 Missense_Mutation p.P1458L 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-UF-A71D-01 14 80669598 80669598 C T DIO2 Missense_Mutation p.V122M 0.24 deleterious(0) probably_damaging(0.992) TCGA-UF-A71D-01 14 81259244 81259244 C A CEP128 Nonsense_Mutation p.E474* 0.11 TCGA-UF-A71D-01 14 95035828 95035828 C G SERPINA4 Missense_Mutation p.R394G 0.18 tolerated(0.39) benign(0.135) TCGA-UF-A71D-01 15 25442749 25442749 T C SNORD115-15 RNA 0.02 TCGA-UF-A71D-01 15 25451432 25451432 T - SNORD115-20 RNA 0.13 TCGA-UF-A71D-01 15 27772658 27772658 C A GABRG3 Silent p.A315A 0.21 TCGA-UF-A71D-01 15 28473446 28473446 G A HERC2 Silent p.T1794T 0.27 TCGA-UF-A71D-01 15 32929543 32929543 G C ARHGAP11A Missense_Mutation p.G857R 0.28 tolerated(0.89) benign(0) TCGA-UF-A71D-01 15 34042180 34042180 G A RYR3 Missense_Mutation p.G2734R 0.15 possibly_damaging(0.703) TCGA-UF-A71D-01 15 40591145 40591145 T C PLCB2 Missense_Mutation p.Y235C 0.35 deleterious(0.01) probably_damaging(0.981) TCGA-UF-A71D-01 15 44097352 44097352 C G MFAP1 Missense_Mutation p.K420N 0.20 tolerated(0.09) benign(0.261) TCGA-UF-A71D-01 15 55970166 55970166 T C PRTG Missense_Mutation p.I404V 0.29 tolerated(1) benign(0.001) TCGA-UF-A71D-01 15 63620322 63620322 G C CA12 Silent p.V294V 0.18 TCGA-UF-A71D-01 15 63882861 63882861 G A USP3 Missense_Mutation p.V467I 0.22 tolerated(0.13) benign(0.075) TCGA-UF-A71D-01 15 65255891 65255891 G T SPG21 3'UTR 0.29 TCGA-UF-A71D-01 15 66797162 66797162 C T RPL4 5'UTR 0.32 TCGA-UF-A71D-01 15 78768539 78768539 C T IREB2 Nonsense_Mutation p.Q345* 0.10 TCGA-UF-A71D-01 15 81592332 81592332 C A IL16 Silent p.R889R 0.27 TCGA-UF-A71D-01 15 81592669 81592669 C A IL16 Missense_Mutation p.S1001Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 15 86800203 86800203 G T AGBL1 Silent p.P239P 0.27 TCGA-UF-A71D-01 16 16216017 16216017 C T ABCC1 Silent p.S1192S 0.33 TCGA-UF-A71D-01 16 19070773 19070773 C G TMC7 Missense_Mutation p.A688G 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-UF-A71D-01 16 19070845 19070845 G T TMC7 Intron 0.10 TCGA-UF-A71D-01 16 22558366 22558366 A G RP11-368J21.3 RNA 0.21 TCGA-UF-A71D-01 16 24373118 24373118 C T CACNG3 Silent p.S294S 0.16 TCGA-UF-A71D-01 16 27549199 27549199 C T GTF3C1 Missense_Mutation p.G220R 0.20 deleterious(0.03) benign(0.373) TCGA-UF-A71D-01 16 335009 335009 C T PDIA2 Silent p.F224F 0.51 TCGA-UF-A71D-01 16 3788618 3788618 G A CREBBP Missense_Mutation p.R1446C 0.25 unknown(0) TCGA-UF-A71D-01 16 55513486 55513486 C T MMP2 Missense_Mutation p.S32L 0.14 tolerated(0.06) benign(0.193) TCGA-UF-A71D-01 16 55734117 55734117 T A SLC6A2 Missense_Mutation p.W553R 0.23 deleterious(0) probably_damaging(0.991) TCGA-UF-A71D-01 16 57509780 57509780 G T DOK4 Nonsense_Mutation p.C52* 0.26 TCGA-UF-A71D-01 16 66599843 66599843 C T CKLF Missense_Mutation p.R130W 0.35 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 16 67271978 67271979 TG - FHOD1 Frame_Shift_Del p.H200Qfs*2 0.17 TCGA-UF-A71D-01 16 67768910 67768910 A C RANBP10 Silent p.P209P 0.25 TCGA-UF-A71D-01 16 70917990 70917990 C A HYDIN Missense_Mutation p.G3271V 0.24 benign(0.067) TCGA-UF-A71D-01 16 76528820 76528820 G A CNTNAP4 Silent p.L625L 0.24 TCGA-UF-A71D-01 16 81730186 81730186 G T CMIP Missense_Mutation p.V518L 0.36 tolerated(0.08) benign(0.119) TCGA-UF-A71D-01 16 88052149 88052149 G A BANP Silent p.E249E 0.25 TCGA-UF-A71D-01 16 88721197 88721197 C T MVD Missense_Mutation p.A306T 0.27 deleterious(0) probably_damaging(0.96) TCGA-UF-A71D-01 16 88876924 88876924 G A APRT Silent p.A76A 0.15 TCGA-UF-A71D-01 17 10318495 10318495 C T MYH8 Missense_Mutation p.G248D 0.21 deleterious(0) probably_damaging(0.971) TCGA-UF-A71D-01 17 10346788 10346788 C T MYH4 Silent p.E1908E 0.24 TCGA-UF-A71D-01 17 10432101 10432101 T A MYH2 Missense_Mutation p.Q1217L 0.33 deleterious(0) possibly_damaging(0.697) TCGA-UF-A71D-01 17 11642350 11642350 T C DNAH9 Missense_Mutation p.F1990L 0.24 probably_damaging(0.939) TCGA-UF-A71D-01 17 17698485 17698485 C T RAI1 Silent p.A741A 0.20 TCGA-UF-A71D-01 17 20363739 20363739 C T LGALS9B Silent p.G19G 0.11 TCGA-UF-A71D-01 17 27067904 27067904 G A NEK8 Missense_Mutation p.E545K 0.21 deleterious(0.04) possibly_damaging(0.787) TCGA-UF-A71D-01 17 3101525 3101525 G C OR1A2 Missense_Mutation p.C238S 0.24 tolerated(1) benign(0) TCGA-UF-A71D-01 17 32646523 32646523 G - CCL8 Frame_Shift_Del p.M1? 0.36 TCGA-UF-A71D-01 17 33977578 33977578 G C AP2B1 Silent p.R522R 0.30 TCGA-UF-A71D-01 17 34308390 34308390 T A CCL16 Missense_Mutation p.S23C 0.37 tolerated(0.08) possibly_damaging(0.707) TCGA-UF-A71D-01 17 38319075 38319075 C T CASC3 Missense_Mutation p.L236F 0.21 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 17 38991581 38991582 - A TMEM99 3'UTR 0.26 TCGA-UF-A71D-01 17 39190831 39190831 G T KRTAP1-3 Nonsense_Mutation p.C81* 0.40 TCGA-UF-A71D-01 17 39240644 39240644 C A KRTAP4-7 Silent p.P62P 0.17 TCGA-UF-A71D-01 17 39522752 39522752 C T KRT33B Silent p.E186E 0.08 TCGA-UF-A71D-01 17 39645834 39645834 C T KRT36 Missense_Mutation p.E95K 0.23 deleterious(0.02) possibly_damaging(0.492) TCGA-UF-A71D-01 17 39725676 39725676 A G KRT9 Splice_Site p.X348_splice 0.15 TCGA-UF-A71D-01 17 40011269 40011270 - TC KLHL11 Frame_Shift_Ins p.Y284Dfs*15 0.30 TCGA-UF-A71D-01 17 48918183 48918183 G T WFIKKN2 Missense_Mutation p.D512Y 0.35 deleterious(0) probably_damaging(0.992) TCGA-UF-A71D-01 17 56565644 56565644 C A HSF5 5'UTR 0.48 TCGA-UF-A71D-01 17 66533548 66533548 C A FAM20A 3'UTR 0.39 TCGA-UF-A71D-01 17 73096393 73096393 C T SLC16A5 Missense_Mutation p.A212V 0.16 tolerated(0.14) benign(0.013) TCGA-UF-A71D-01 17 7579437 7579437 C - TP53 Frame_Shift_Del p.A84Pfs*39 0.40 TCGA-UF-A71D-01 17 7758805 7758805 G A TMEM88 Missense_Mutation p.D85N 0.28 deleterious(0) probably_damaging(0.993) TCGA-UF-A71D-01 18 11999164 11999164 C T IMPA2 Nonsense_Mutation p.R70* 0.13 TCGA-UF-A71D-01 18 21355855 21355855 C T LAMA3 Missense_Mutation p.A458V 0.22 probably_damaging(0.997) TCGA-UF-A71D-01 18 22807242 22807242 A G ZNF521 Missense_Mutation p.S214P 0.31 deleterious(0.02) possibly_damaging(0.882) TCGA-UF-A71D-01 18 2891730 2891730 C A EMILIN2 Silent p.V535V 0.16 TCGA-UF-A71D-01 18 34647275 34647275 A G KIAA1328 Silent p.E333E 0.41 TCGA-UF-A71D-01 18 5398133 5398133 A G EPB41L3 Missense_Mutation p.S787P 0.17 deleterious(0.04) benign(0.323) TCGA-UF-A71D-01 18 5891615 5891615 C G TMEM200C Missense_Mutation p.G150R 0.13 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 18 63530261 63530261 G T CDH7 Intron 0.28 TCGA-UF-A71D-01 18 7012055 7012055 G C LAMA1 Missense_Mutation p.P1149R 0.30 tolerated(0.22) possibly_damaging(0.869) TCGA-UF-A71D-01 18 7012056 7012056 G C LAMA1 Missense_Mutation p.P1149A 0.29 deleterious(0.03) benign(0.111) TCGA-UF-A71D-01 18 7906565 7906565 G T PTPRM Silent p.V177V 0.49 TCGA-UF-A71D-01 19 10112295 10112295 C T COL5A3 Missense_Mutation p.A339T 0.24 unknown(0) TCGA-UF-A71D-01 19 11917346 11917346 G C ZNF491 Missense_Mutation p.G193A 0.33 deleterious(0) possibly_damaging(0.858) TCGA-UF-A71D-01 19 12090881 12090881 G A ZNF763 3'UTR 0.10 TCGA-UF-A71D-01 19 13220449 13220449 C T TRMT1 Missense_Mutation p.G409D 0.17 tolerated(0.61) benign(0.012) TCGA-UF-A71D-01 19 14067054 14067054 A G DCAF15 Missense_Mutation p.D198G 0.15 tolerated(0.35) benign(0.046) TCGA-UF-A71D-01 19 1452934 1452934 C T APC2 5'UTR 0.26 TCGA-UF-A71D-01 19 15511143 15511143 C A AKAP8L Missense_Mutation p.E337D 0.16 tolerated(0.61) possibly_damaging(0.899) TCGA-UF-A71D-01 19 17436109 17436109 G A ANO8 Silent p.H916H 0.23 TCGA-UF-A71D-01 19 18109272 18109272 G A KCNN1 3'UTR 0.47 TCGA-UF-A71D-01 19 23543263 23543263 C T ZNF91 Missense_Mutation p.A840T 0.21 tolerated(0.78) benign(0.005) TCGA-UF-A71D-01 19 24010155 24010155 T A RPSAP58 Silent p.A64A 0.14 TCGA-UF-A71D-01 19 29215132 29215132 A G AC005307.3 RNA 0.45 TCGA-UF-A71D-01 19 3148624 3148624 C T GNA15 Nonsense_Mutation p.Q61* 0.29 TCGA-UF-A71D-01 19 33623337 33623337 G A WDR88 Missense_Mutation p.D88N 0.46 deleterious(0) benign(0.047) TCGA-UF-A71D-01 19 36530392 36530392 C T THAP8 Missense_Mutation p.A169T 0.50 tolerated(0.26) benign(0.006) TCGA-UF-A71D-01 19 39076578 39076578 G A RYR1 Missense_Mutation p.G4935D 0.32 possibly_damaging(0.472) TCGA-UF-A71D-01 19 39693624 39693624 G A SYCN 3'UTR 0.40 TCGA-UF-A71D-01 19 42462927 42462927 T C RABAC1 Missense_Mutation p.N77S 0.48 deleterious(0) probably_damaging(0.998) TCGA-UF-A71D-01 19 42914537 42914537 C T LIPE Silent p.E447E 0.63 TCGA-UF-A71D-01 19 4555498 4555498 C T SEMA6B Missense_Mutation p.A184T 0.37 deleterious(0) possibly_damaging(0.847) TCGA-UF-A71D-01 19 4689615 4689615 C G DPP9 Silent p.T572T 0.45 TCGA-UF-A71D-01 19 48967822 48967822 G A KCNJ14 Missense_Mutation p.D367N 0.35 tolerated(0.45) benign(0.407) TCGA-UF-A71D-01 19 50979183 50979183 G T FAM71E1 Silent p.P89P 0.14 TCGA-UF-A71D-01 19 55805452 55805452 G T BRSK1 Missense_Mutation p.G176C 0.40 deleterious(0) probably_damaging(0.994) TCGA-UF-A71D-01 19 56549546 56549546 C A NLRP5 Missense_Mutation p.A924D 0.32 tolerated(0.32) benign(0.34) TCGA-UF-A71D-01 19 58049439 58049439 C T ZNF549 Missense_Mutation p.T356I 0.33 deleterious(0) probably_damaging(0.944) TCGA-UF-A71D-01 19 58352340 58352340 A G ZNF587B Missense_Mutation p.I100V 0.23 tolerated(1) benign(0.034) TCGA-UF-A71D-01 19 8056655 8056656 - C ELAVL1 Frame_Shift_Ins p.D16* 0.20 TCGA-UF-A71D-01 1 101198034 101198034 C T VCAM1 Missense_Mutation p.S529F 0.15 tolerated(0.12) benign(0.033) TCGA-UF-A71D-01 1 103364261 103364261 C T COL11A1 Silent p.K1403K 0.21 TCGA-UF-A71D-01 1 103471837 103471837 G T COL11A1 Missense_Mutation p.T573K 0.08 unknown(0) TCGA-UF-A71D-01 1 103548523 103548523 G T COL11A1 Missense_Mutation p.P38T 0.13 probably_damaging(0.996) TCGA-UF-A71D-01 1 12887400 12887400 G - PRAMEF11 Frame_Shift_Del p.R153Afs*7 0.26 TCGA-UF-A71D-01 1 143767779 143767779 G C PPIAL4G Missense_Mutation p.Q24E 0.09 deleterious_low_confidence(0.01) benign(0.002) TCGA-UF-A71D-01 1 150238998 150238998 G A APH1A Missense_Mutation p.S223F 0.09 tolerated(0.26) benign(0.007) TCGA-UF-A71D-01 1 150679212 150679212 A T HORMAD1 Silent p.P207P 0.50 TCGA-UF-A71D-01 1 151237331 151237331 C T PSMD4 Silent p.G102G 0.17 TCGA-UF-A71D-01 1 152732150 152732150 C T KPRP Missense_Mutation p.P29L 0.12 tolerated_low_confidence(0.12) benign(0.083) TCGA-UF-A71D-01 1 153927624 153927624 G A CRTC2 Nonsense_Mutation p.R58* 0.14 TCGA-UF-A71D-01 1 155240681 155240681 G A CLK2 Nonsense_Mutation p.R30* 0.06 TCGA-UF-A71D-01 1 156132738 156132738 G A SEMA4A Silent p.Q329Q 0.18 TCGA-UF-A71D-01 1 158724915 158724915 A C OR6K6 Missense_Mutation p.T104P 0.14 deleterious(0.04) possibly_damaging(0.836) TCGA-UF-A71D-01 1 158911997 158911997 T C PYHIN1 Silent p.I270I 0.22 TCGA-UF-A71D-01 1 160097546 160097546 C T ATP1A2 Missense_Mutation p.A318V 0.43 deleterious(0.04) probably_damaging(0.922) TCGA-UF-A71D-01 1 160811221 160811221 C A CD244 Missense_Mutation p.R150I 0.22 tolerated(0.62) benign(0.036) TCGA-UF-A71D-01 1 161512681 161512681 G T FCGR3A 3'UTR 0.19 TCGA-UF-A71D-01 1 161512682 161512682 G T FCGR3A 3'UTR 0.19 TCGA-UF-A71D-01 1 161512826 161512826 C G FCGR3A Missense_Mutation p.W283C 0.06 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 1 171086520 171086520 C A FMO3 Missense_Mutation p.H513N 0.13 tolerated(0.44) benign(0.001) TCGA-UF-A71D-01 1 171178278 171178278 G T FMO2 3'UTR 0.50 TCGA-UF-A71D-01 1 173517553 173517553 T G SLC9C2 Missense_Mutation p.D479A 0.23 deleterious(0.01) benign(0.079) TCGA-UF-A71D-01 1 173833300 173833302 TTA - ZBTB37 5'Flank 0.14 TCGA-UF-A71D-01 1 174210701 174210701 G T RABGAP1L Missense_Mutation p.G208V 0.28 deleterious(0.01) benign(0.285) TCGA-UF-A71D-01 1 175066728 175066728 A G TNN Silent p.T588T 0.21 TCGA-UF-A71D-01 1 176661369 176661369 C T PAPPA2 Missense_Mutation p.P847S 0.14 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 1 177249808 177249808 T A BRINP2 Missense_Mutation p.L499Q 0.49 tolerated(0.06) possibly_damaging(0.694) TCGA-UF-A71D-01 1 179089369 179089369 G T ABL2 Missense_Mutation p.A334E 0.16 deleterious(0.02) possibly_damaging(0.792) TCGA-UF-A71D-01 1 181731778 181731778 C A CACNA1E Silent p.I1558I 0.52 TCGA-UF-A71D-01 1 196461471 196461471 C T KCNT2 Silent p.R32R 0.08 TCGA-UF-A71D-01 1 198492686 198492686 G A ATP6V1G3 Silent p.G64G 0.12 TCGA-UF-A71D-01 1 201751633 201751634 - T NAV1 Frame_Shift_Ins p.R665Lfs*3 0.18 TCGA-UF-A71D-01 1 203020955 203020955 C - PPFIA4 Frame_Shift_Del p.P19Qfs*10 0.15 TCGA-UF-A71D-01 1 212788549 212788549 G T ATF3 Silent p.L62L 0.13 TCGA-UF-A71D-01 1 216420234 216420234 G C USH2A Missense_Mutation p.F834L 0.05 benign(0.213) TCGA-UF-A71D-01 1 217793352 217793352 G A GPATCH2 Silent p.T182T 0.21 TCGA-UF-A71D-01 1 22084256 22084256 G A USP48 Missense_Mutation p.P52L 0.26 deleterious(0) probably_damaging(0.994) TCGA-UF-A71D-01 1 220969996 220969996 T C MARC1 Missense_Mutation p.L154P 0.34 deleterious(0.02) possibly_damaging(0.88) TCGA-UF-A71D-01 1 231004195 231004195 G C C1orf198 Missense_Mutation p.L22V 0.24 deleterious(0.05) probably_damaging(0.996) TCGA-UF-A71D-01 1 245021346 245021346 T C HNRNPU Silent p.G487G 0.33 TCGA-UF-A71D-01 1 248004501 248004501 C A OR11L1 Missense_Mutation p.G233V 0.19 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 1 248436832 248436832 A C OR2T33 Missense_Mutation p.C95W 0.10 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 1 2522995 2522995 C T MMEL1 Splice_Site p.X747_splice 0.09 TCGA-UF-A71D-01 1 29189480 29189480 C T OPRD1 Silent p.G268G 0.12 TCGA-UF-A71D-01 1 29447725 29447725 G C TMEM200B Missense_Mutation p.L206V 0.14 tolerated(0.08) probably_damaging(0.978) TCGA-UF-A71D-01 1 32119209 32119209 C A COL16A1 Missense_Mutation p.G1535C 0.38 probably_damaging(1) TCGA-UF-A71D-01 1 32201115 32201115 G A BAI2 Intron 0.17 TCGA-UF-A71D-01 1 36564294 36564294 C G COL8A2 Missense_Mutation p.A330P 0.29 tolerated(0.77) unknown(0) TCGA-UF-A71D-01 1 49208439 49208439 G A BEND5 Silent p.P250P 0.26 TCGA-UF-A71D-01 1 52941095 52941095 C A ZCCHC11 Silent p.T712T 0.25 TCGA-UF-A71D-01 1 57406547 57406547 T C C8B Missense_Mutation p.Y458C 0.22 deleterious(0) probably_damaging(0.998) TCGA-UF-A71D-01 1 6579585 6579585 G A NOL9 3'Flank 0.28 TCGA-UF-A71D-01 1 66834519 66834519 C T PDE4B Missense_Mutation p.S571F 0.18 deleterious(0) probably_damaging(0.949) TCGA-UF-A71D-01 1 74957916 74957916 C A TNNI3K Missense_Mutation p.L874I 0.27 deleterious_low_confidence(0.01) benign(0.066) TCGA-UF-A71D-01 1 78177463 78177463 C T USP33 Missense_Mutation p.R823K 0.30 deleterious(0.05) probably_damaging(0.992) TCGA-UF-A71D-01 1 79128500 79128500 G C IFI44 Missense_Mutation p.A409P 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-UF-A71D-01 1 93621932 93621932 C G TMED5 Missense_Mutation p.Q132H 0.17 deleterious(0.05) benign(0.389) TCGA-UF-A71D-01 1 95293066 95293066 C T SLC44A3 Silent p.H94H 0.11 TCGA-UF-A71D-01 20 10030801 10030801 G T ANKEF1 Silent p.P528P 0.33 TCGA-UF-A71D-01 20 13071769 13071769 G C SPTLC3 Missense_Mutation p.A216P 0.29 deleterious(0) probably_damaging(0.993) TCGA-UF-A71D-01 20 16253867 16253867 T A KIF16B 3'UTR 0.26 TCGA-UF-A71D-01 20 20029145 20029145 C T CRNKL1 Silent p.R260R 0.28 TCGA-UF-A71D-01 20 2375188 2375188 G A TGM6 Missense_Mutation p.R33H 0.38 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 20 2464782 2464782 C T ZNF343 Silent p.G275G 0.29 TCGA-UF-A71D-01 20 32295525 32295525 C T PXMP4 Missense_Mutation p.R209H 0.23 tolerated_low_confidence(0.11) benign(0.002) TCGA-UF-A71D-01 20 35060212 35060212 C T DLGAP4 Missense_Mutation p.P31L 0.20 deleterious(0.02) possibly_damaging(0.798) TCGA-UF-A71D-01 20 36855589 36855589 C T KIAA1755 Silent p.A673A 0.08 TCGA-UF-A71D-01 20 37536546 37536546 G A PPP1R16B Silent p.L332L 0.22 TCGA-UF-A71D-01 20 47361678 47361678 A T PREX1 Missense_Mutation p.F100I 0.18 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 20 58444966 58444966 C G SYCP2 Missense_Mutation p.E1210Q 0.20 tolerated(0.12) benign(0.124) TCGA-UF-A71D-01 20 7866474 7866474 C A HAO1 Missense_Mutation p.G284V 0.35 deleterious(0) probably_damaging(0.956) TCGA-UF-A71D-01 20 7866475 7866475 C A HAO1 Missense_Mutation p.G284W 0.36 deleterious(0) probably_damaging(0.996) TCGA-UF-A71D-01 20 8113334 8113334 A G PLCB1 Silent p.Q12Q 0.30 TCGA-UF-A71D-01 21 22658660 22658660 C A NCAM2 Silent p.R137R 0.30 TCGA-UF-A71D-01 21 28338542 28338542 G T ADAMTS5 Missense_Mutation p.P57T 0.26 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-UF-A71D-01 21 31864177 31864177 G C KRTAP19-3 Silent p.R33R 0.29 TCGA-UF-A71D-01 21 38605665 38605665 C T DSCR3 Missense_Mutation p.A144T 0.09 tolerated(0.51) benign(0.002) TCGA-UF-A71D-01 21 39086663 39086663 G A KCNJ6 Missense_Mutation p.T266M 0.37 deleterious(0) probably_damaging(0.995) TCGA-UF-A71D-01 21 42866334 42866334 G C TMPRSS2 Missense_Mutation p.P100A 0.25 deleterious(0.01) possibly_damaging(0.557) TCGA-UF-A71D-01 21 47716087 47716087 C T YBEY Silent p.T117T 0.13 TCGA-UF-A71D-01 22 17579699 17579699 T A IL17RA Silent p.S115S 0.16 TCGA-UF-A71D-01 22 23915323 23915323 C A IGLL1 3'UTR 0.24 TCGA-UF-A71D-01 22 23915609 23915609 C T IGLL1 Missense_Mutation p.M162I 0.20 deleterious_low_confidence(0.02) benign(0) TCGA-UF-A71D-01 22 30951149 30951149 C T GAL3ST1 Missense_Mutation p.A355T 0.09 tolerated(0.35) benign(0.005) TCGA-UF-A71D-01 22 38327856 38327856 C T MICALL1 Silent p.S644S 0.09 TCGA-UF-A71D-01 22 38468504 38468504 G A PICK1 Missense_Mutation p.V193M 0.09 tolerated(0.1) possibly_damaging(0.75) TCGA-UF-A71D-01 22 40711989 40711989 G C TNRC6B Missense_Mutation p.W1649C 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-UF-A71D-01 22 42280846 42280846 G T SREBF2 Missense_Mutation p.G680V 0.26 deleterious(0) probably_damaging(0.952) TCGA-UF-A71D-01 22 43023656 43023656 T C CYB5R3 Missense_Mutation p.I201V 0.28 tolerated(0.46) benign(0) TCGA-UF-A71D-01 22 47309249 47309249 G T TBC1D22A Intron 0.17 TCGA-UF-A71D-01 22 50904401 50904401 C T SBF1 Missense_Mutation p.V334M 0.17 deleterious(0.02) benign(0.352) TCGA-UF-A71D-01 2 103003414 103003414 C T IL18R1 Silent p.A301A 0.20 TCGA-UF-A71D-01 2 103012989 103012989 A T IL18R1 Splice_Site p.X424_splice 0.47 TCGA-UF-A71D-01 2 10559942 10559942 C T HPCAL1 Missense_Mutation p.T20M 0.28 deleterious(0) probably_damaging(0.997) TCGA-UF-A71D-01 2 113286385 113286385 C T TTL 3'UTR 0.33 TCGA-UF-A71D-01 2 11338713 11338713 T A ROCK2 Splice_Site p.X1002_splice 0.21 TCGA-UF-A71D-01 2 125660538 125660538 C G CNTNAP5 Missense_Mutation p.N1171K 0.27 deleterious(0.01) probably_damaging(1) TCGA-UF-A71D-01 2 128331592 128331592 G C MYO7B Silent p.A230A 0.19 TCGA-UF-A71D-01 2 135739064 135739064 C T MAP3K19 Missense_Mutation p.G1083R 0.29 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 2 135779395 135779395 G C MAP3K19 Missense_Mutation p.H10D 0.28 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-UF-A71D-01 2 139429085 139429085 G A NXPH2 Missense_Mutation p.P68S 0.07 tolerated(0.46) benign(0.003) TCGA-UF-A71D-01 2 149541326 149541326 G A EPC2 Splice_Site p.X673_splice 0.25 TCGA-UF-A71D-01 2 15694237 15694237 C A NBAS Nonsense_Mutation p.G79* 0.24 TCGA-UF-A71D-01 2 164468075 164468075 G C FIGN Missense_Mutation p.S89R 0.17 tolerated(0.08) benign(0.13) TCGA-UF-A71D-01 2 165383572 165383572 T C GRB14 Silent p.L185L 0.36 TCGA-UF-A71D-01 2 166201420 166201420 T C SCN2A Missense_Mutation p.V973A 0.19 deleterious(0) benign(0.019) TCGA-UF-A71D-01 2 166894421 166894421 G T SCN1A Missense_Mutation p.F937L 0.27 deleterious(0) probably_damaging(0.938) TCGA-UF-A71D-01 2 175260412 175260412 C A CIR1 5'UTR 0.26 TCGA-UF-A71D-01 2 178096727 178096728 - A NFE2L2 Frame_Shift_Ins p.I202Yfs*2 0.25 TCGA-UF-A71D-01 2 1795628 1795628 A G MYT1L 3'UTR 0.34 TCGA-UF-A71D-01 2 186672313 186672313 C A FSIP2 Missense_Mutation p.P6183T 0.36 possibly_damaging(0.634) TCGA-UF-A71D-01 2 189406034 189406034 A T GULP1 Missense_Mutation p.S130C 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-UF-A71D-01 2 190430181 190430181 T C SLC40A1 Missense_Mutation p.Y220C 0.30 deleterious(0) probably_damaging(0.997) TCGA-UF-A71D-01 2 196636512 196636512 C T DNAH7 Missense_Mutation p.A3769T 0.19 tolerated(0.06) possibly_damaging(0.654) TCGA-UF-A71D-01 2 196786826 196786826 C A DNAH7 Silent p.T1307T 0.31 TCGA-UF-A71D-01 2 198950684 198950684 C A PLCL1 Missense_Mutation p.P815T 0.23 deleterious(0) probably_damaging(0.963) TCGA-UF-A71D-01 2 20901391 20901391 C - C2orf43 Frame_Shift_Del p.G242Afs*4 0.30 TCGA-UF-A71D-01 2 220479856 220479856 C T STK11IP Silent p.S981S 0.20 TCGA-UF-A71D-01 2 222301309 222301311 GTA CT EPHA4 Frame_Shift_Del p.F718Lfs*17 0.09 TCGA-UF-A71D-01 2 239140693 239140693 G A AC016757.3 5'Flank 0.28 TCGA-UF-A71D-01 2 32855702 32855702 T C TTC27 Silent p.D67D 0.30 TCGA-UF-A71D-01 2 43927359 43927359 A T PLEKHH2 Missense_Mutation p.N421I 0.33 tolerated(0.25) benign(0.001) TCGA-UF-A71D-01 2 48872217 48872217 A T STON1-GTF2A1L Missense_Mutation p.I821F 0.25 deleterious(0) possibly_damaging(0.861) TCGA-UF-A71D-01 2 50724790 50724790 C A NRXN1 Nonsense_Mutation p.E894* 0.20 TCGA-UF-A71D-01 2 54163900 54163900 C - PSME4 Splice_Site p.X253_splice 0.25 TCGA-UF-A71D-01 2 56420458 56420458 G A CCDC85A Missense_Mutation p.G375R 0.29 tolerated_low_confidence(0.38) benign(0.064) TCGA-UF-A71D-01 2 69870148 69870148 G A AAK1 Nonsense_Mutation p.R9* 0.32 TCGA-UF-A71D-01 2 70504572 70504572 G A PCYOX1 3'UTR 0.20 TCGA-UF-A71D-01 2 97427779 97427779 C T CNNM4 Missense_Mutation p.T348M 0.23 deleterious(0) probably_damaging(0.996) TCGA-UF-A71D-01 3 116163757 116163757 A T LSAMP Missense_Mutation p.I41N 0.38 deleterious(0) possibly_damaging(0.637) TCGA-UF-A71D-01 3 119325794 119325794 G T PLA1A Nonsense_Mutation p.G83* 0.17 TCGA-UF-A71D-01 3 121415170 121415170 A T GOLGB1 Missense_Mutation p.D1400E 0.39 benign(0.005) TCGA-UF-A71D-01 3 12950863 12950863 C T IQSEC1 Missense_Mutation p.A844T 0.21 deleterious(0.02) possibly_damaging(0.755) TCGA-UF-A71D-01 3 130427223 130427223 C T PIK3R4 Silent p.Q815Q 0.38 TCGA-UF-A71D-01 3 137484192 137484192 C T SOX14 Missense_Mutation p.T189M 0.24 deleterious(0.01) possibly_damaging(0.774) TCGA-UF-A71D-01 3 138023752 138023752 G A NME9 Missense_Mutation p.R191C 0.28 tolerated(1) benign(0.001) TCGA-UF-A71D-01 3 147113878 147113878 G T ZIC4 Missense_Mutation p.T200N 0.31 deleterious(0.02) probably_damaging(0.983) TCGA-UF-A71D-01 3 147128281 147128281 T A ZIC1 Missense_Mutation p.F128I 0.12 tolerated(0.12) probably_damaging(0.996) TCGA-UF-A71D-01 3 15478027 15478027 C T EAF1 Silent p.A235A 0.18 TCGA-UF-A71D-01 3 157160258 157160258 G T PTX3 Missense_Mutation p.W212C 0.21 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 3 167034854 167034854 G - ZBBX Frame_Shift_Del p.P378Qfs*2 0.17 TCGA-UF-A71D-01 3 170846571 170846571 C G TNIK Missense_Mutation p.E569Q 0.25 tolerated_low_confidence(0.07) probably_damaging(0.942) TCGA-UF-A71D-01 3 173996853 173996853 A T NLGN1 Silent p.I354I 0.31 TCGA-UF-A71D-01 3 181430877 181430877 G - SOX2 Frame_Shift_Del p.V244Sfs*30 0.15 TCGA-UF-A71D-01 3 195799023 195799023 C A TFRC Missense_Mutation p.K145N 0.14 deleterious(0.04) benign(0.305) TCGA-UF-A71D-01 3 39180235 39180235 A T TTC21A Missense_Mutation p.R1307W 0.15 deleterious(0) probably_damaging(0.963) TCGA-UF-A71D-01 3 4403883 4403883 G C SUMF1 Missense_Mutation p.S357C 0.18 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 3 4715055 4715055 G A ITPR1 Missense_Mutation p.E799K 0.19 tolerated(1) benign(0.001) TCGA-UF-A71D-01 3 49211804 49211804 C T KLHDC8B Missense_Mutation p.T170I 0.20 tolerated(0.12) possibly_damaging(0.494) TCGA-UF-A71D-01 3 58064475 58064475 G C FLNB Silent p.P191P 0.21 TCGA-UF-A71D-01 3 67058726 67058726 C A KBTBD8 Missense_Mutation p.P575T 0.37 tolerated(0.16) benign(0.416) TCGA-UF-A71D-01 3 6903290 6903290 G C GRM7 Missense_Mutation p.R72T 0.28 tolerated(0.06) benign(0.014) TCGA-UF-A71D-01 3 71830630 71830630 T A PROK2 Silent p.P70P 0.19 TCGA-UF-A71D-01 3 73004459 73004459 A T GXYLT2 Missense_Mutation p.M271L 0.12 deleterious(0) probably_damaging(0.963) TCGA-UF-A71D-01 3 74535779 74535779 C T CNTN3 Nonsense_Mutation p.W62* 0.27 TCGA-UF-A71D-01 3 77530290 77530290 G C ROBO2 Missense_Mutation p.S212T 0.29 tolerated(0.09) benign(0.113) TCGA-UF-A71D-01 3 8787625 8787625 C T CAV3 3'UTR 0.20 TCGA-UF-A71D-01 3 9804847 9804847 C T CAMK1 Missense_Mutation p.G89D 0.26 tolerated(0.48) benign(0.345) TCGA-UF-A71D-01 4 106155065 106155065 A G TET2 5'UTR 0.24 TCGA-UF-A71D-01 4 110763787 110763787 G A RRH Missense_Mutation p.V295M 0.12 deleterious(0.03) benign(0.059) TCGA-UF-A71D-01 4 120193113 120193113 A T USP53 Missense_Mutation p.N700Y 0.34 deleterious(0) possibly_damaging(0.684) TCGA-UF-A71D-01 4 120549802 120549802 C A PDE5A Missense_Mutation p.G9W 0.23 deleterious_low_confidence(0) unknown(0) TCGA-UF-A71D-01 4 121957435 121957435 G T NDNF Missense_Mutation p.T564N 0.25 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 4 121957441 121957441 A G NDNF Missense_Mutation p.V562A 0.27 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 4 156277005 156277005 T C MAP9 Missense_Mutation p.S385G 0.25 tolerated(0.67) benign(0.01) TCGA-UF-A71D-01 4 156775228 156775228 C T ASIC5 Splice_Site p.X195_splice 0.16 TCGA-UF-A71D-01 4 162577617 162577617 G A FSTL5 Nonsense_Mutation p.Q253* 0.22 TCGA-UF-A71D-01 4 176733336 176733336 C G GPM6A Intron 0.21 TCGA-UF-A71D-01 4 187173194 187173194 C A KLKB1 Missense_Mutation p.R390S 0.19 deleterious(0.01) probably_damaging(1) TCGA-UF-A71D-01 4 187629000 187629000 A C FAT1 Missense_Mutation p.I661R 0.25 benign(0.299) TCGA-UF-A71D-01 4 26483384 26483384 C T CCKAR Missense_Mutation p.C388Y 0.17 deleterious(0) probably_damaging(0.963) TCGA-UF-A71D-01 4 435877 435877 G C ZNF721 Silent p.S793S 0.35 TCGA-UF-A71D-01 4 44724233 44724233 C T GNPDA2 5'UTR 0.20 TCGA-UF-A71D-01 4 46736953 46736953 A T COX7B2 3'UTR 0.21 TCGA-UF-A71D-01 4 48559548 48559548 G A FRYL Silent p.R1349R 0.25 TCGA-UF-A71D-01 4 57179362 57179362 G T KIAA1211 Splice_Site p.X119_splice 0.31 TCGA-UF-A71D-01 4 62845314 62845314 G T LPHN3 Missense_Mutation p.V879L 0.28 tolerated(0.06) benign(0.079) TCGA-UF-A71D-01 4 65240897 65240897 G A TECRL Silent p.H93H 0.15 TCGA-UF-A71D-01 4 71863852 71863852 C T DCK Missense_Mutation p.P54S 0.15 deleterious(0) probably_damaging(0.995) TCGA-UF-A71D-01 4 72629156 72629156 C T GC Missense_Mutation p.A243T 0.16 tolerated(0.57) benign(0.062) TCGA-UF-A71D-01 4 77033766 77033766 G A ART3 3'UTR 0.19 TCGA-UF-A71D-01 4 81123492 81123492 C A PRDM8 Silent p.G292G 0.22 TCGA-UF-A71D-01 4 81187881 81187881 G T FGF5 5'UTR 0.17 TCGA-UF-A71D-01 4 81196109 81196109 A G FGF5 Silent p.R134R 0.28 TCGA-UF-A71D-01 4 88535067 88535067 G A DSPP Missense_Mutation p.G418E 0.16 possibly_damaging(0.859) TCGA-UF-A71D-01 4 91229927 91229927 C T CCSER1 Silent p.F164F 0.26 TCGA-UF-A71D-01 5 111504461 111504461 C A EPB41L4A Missense_Mutation p.G636V 0.33 deleterious_low_confidence(0.05) benign(0.038) TCGA-UF-A71D-01 5 137426742 137426742 C G WNT8A Missense_Mutation p.L346V 0.32 tolerated_low_confidence(0.18) benign(0.008) TCGA-UF-A71D-01 5 137518989 137518989 C T KIF20A Nonsense_Mutation p.Q322* 0.19 TCGA-UF-A71D-01 5 138652771 138652771 A G MATR3 Missense_Mutation p.R387G 0.47 tolerated(0.26) probably_damaging(0.942) TCGA-UF-A71D-01 5 13900339 13900339 G C DNAH5 Nonsense_Mutation p.Y745* 0.21 TCGA-UF-A71D-01 5 140167229 140167229 G T PCDHA1 Missense_Mutation p.A452S 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.832) TCGA-UF-A71D-01 5 140222682 140222682 G A PCDHA8 Silent p.A592A 0.53 TCGA-UF-A71D-01 5 140574456 140574456 G A PCDHB10 Silent p.Q777Q 0.39 TCGA-UF-A71D-01 5 140615580 140615580 A T PCDHB18 RNA 0.40 TCGA-UF-A71D-01 5 140725738 140725738 C T PCDHGA3 Missense_Mutation p.A713V 0.14 tolerated_low_confidence(0.1) benign(0.113) TCGA-UF-A71D-01 5 140793389 140793389 T C PCDHGA10 Missense_Mutation p.L216P 0.07 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-UF-A71D-01 5 143586285 143586285 T C KCTD16 Missense_Mutation p.L3P 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UF-A71D-01 5 147845449 147845449 G T HTR4 Nonsense_Mutation p.C372* 0.29 TCGA-UF-A71D-01 5 148977395 148977395 G A ARHGEF37 Silent p.R21R 0.41 TCGA-UF-A71D-01 5 150444653 150444653 C T TNIP1 Missense_Mutation p.E2K 0.35 deleterious(0) probably_damaging(0.996) TCGA-UF-A71D-01 5 156940468 156940468 T C ADAM19 Missense_Mutation p.I238V 0.24 tolerated(0.96) benign(0.002) TCGA-UF-A71D-01 5 169675713 169675713 T A LCP2 Silent p.A530A 0.44 TCGA-UF-A71D-01 5 171780911 171780911 C T SH3PXD2B Missense_Mutation p.E256K 0.33 deleterious(0) probably_damaging(0.994) TCGA-UF-A71D-01 5 176308809 176308809 G A HK3 Silent p.I759I 0.38 TCGA-UF-A71D-01 5 176638165 176638166 CG A NSD1 Frame_Shift_Del p.T922Kfs*6 0.27 TCGA-UF-A71D-01 5 192397 192397 C T LRRC14B Silent p.T248T 0.20 TCGA-UF-A71D-01 5 19473591 19473591 G A CDH18 Missense_Mutation p.T706I 0.17 tolerated(0.5) benign(0.022) TCGA-UF-A71D-01 5 26881501 26881501 G A CDH9 Missense_Mutation p.P705L 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-UF-A71D-01 5 26903811 26903811 C T CDH9 Missense_Mutation p.G312S 0.14 tolerated(0.09) benign(0.163) TCGA-UF-A71D-01 5 2747572 2747572 G T IRX2 Intron 0.64 TCGA-UF-A71D-01 5 31317853 31317853 G T CDH6 Silent p.V568V 0.20 TCGA-UF-A71D-01 5 32074069 32074069 C T PDZD2 Nonsense_Mutation p.R953* 0.25 TCGA-UF-A71D-01 5 33596097 33596097 G A ADAMTS12 Missense_Mutation p.P866S 0.14 tolerated(0.08) benign(0.417) TCGA-UF-A71D-01 5 34823347 34823347 T C RAI14 Missense_Mutation p.V470A 0.46 tolerated(0.76) benign(0.002) TCGA-UF-A71D-01 5 35727788 35727788 G T SPEF2 Nonsense_Mutation p.G976* 0.25 TCGA-UF-A71D-01 5 40853910 40853910 G T CARD6 Missense_Mutation p.V826L 0.21 tolerated(0.09) benign(0.139) TCGA-UF-A71D-01 5 41039604 41039604 T C MROH2B Silent p.L669L 0.12 TCGA-UF-A71D-01 5 6312595 6312595 A T CTD-2324F15.2 RNA 0.25 TCGA-UF-A71D-01 5 6742679 6742679 G A PAPD7 Missense_Mutation p.R112Q 0.27 tolerated(0.15) benign(0.23) TCGA-UF-A71D-01 5 7859433 7859433 A C FASTKD3 3'UTR 0.38 TCGA-UF-A71D-01 6 109477159 109477159 C G CEP57L1 Intron 0.33 TCGA-UF-A71D-01 6 111543244 111543244 T C SLC16A10 Missense_Mutation p.F452L 0.10 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 6 127476453 127476453 C T RSPO3 Silent p.F168F 0.37 TCGA-UF-A71D-01 6 129591784 129591784 A T LAMA2 Missense_Mutation p.T780S 0.16 deleterious(0) probably_damaging(0.912) TCGA-UF-A71D-01 6 132030079 132030079 A G CTAGE9 Silent p.L693L 0.28 TCGA-UF-A71D-01 6 146708096 146708096 A G GRM1 Missense_Mutation p.D558G 0.23 deleterious(0) probably_damaging(0.983) TCGA-UF-A71D-01 6 146720184 146720184 T A GRM1 Missense_Mutation p.M670K 0.24 deleterious(0) probably_damaging(0.953) TCGA-UF-A71D-01 6 152536121 152536121 C G SYNE1 Missense_Mutation p.L7422F 0.20 probably_damaging(0.999) TCGA-UF-A71D-01 6 15496739 15496739 G A JARID2 Missense_Mutation p.R428Q 0.20 tolerated_low_confidence(0.53) unknown(0) TCGA-UF-A71D-01 6 158870040 158870040 A C TULP4 Missense_Mutation p.T186P 0.27 deleterious(0) probably_damaging(0.959) TCGA-UF-A71D-01 6 159655423 159655423 C A FNDC1 Silent p.T1293T 0.32 TCGA-UF-A71D-01 6 166902391 166902391 C G RPS6KA2 Silent p.P287P 0.22 TCGA-UF-A71D-01 6 167550377 167550377 T A CCR6 Missense_Mutation p.L220H 0.37 tolerated(0.25) possibly_damaging(0.886) TCGA-UF-A71D-01 6 20846391 20846391 G A CDKAL1 Missense_Mutation p.A242T 0.14 deleterious(0.02) possibly_damaging(0.483) TCGA-UF-A71D-01 6 26157319 26157319 C G HIST1H1E 3'UTR 0.30 TCGA-UF-A71D-01 6 26217170 26217170 G A HIST1H2AE 5'UTR 0.21 TCGA-UF-A71D-01 6 27100932 27100932 G T HIST1H2AG Missense_Mutation p.V28L 0.32 deleterious_low_confidence(0.01) benign(0.022) TCGA-UF-A71D-01 6 27782203 27782203 C T HIST1H2AJ Missense_Mutation p.G106S 0.24 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-UF-A71D-01 6 27792121 27792121 T C HIST1H4J Silent p.Y73Y 0.14 TCGA-UF-A71D-01 6 31323092 31323093 - C HLA-B Splice_Site p.X299_splice 0.25 TCGA-UF-A71D-01 6 31747309 31747309 G A VARS Missense_Mutation p.S1098F 0.19 tolerated(0.08) benign(0.011) TCGA-UF-A71D-01 6 33286951 33286951 C A DAXX Missense_Mutation p.K662N 0.26 tolerated_low_confidence(0.19) benign(0.144) TCGA-UF-A71D-01 6 33382522 33382522 T C PHF1 Missense_Mutation p.I322T 0.31 deleterious(0) probably_damaging(0.954) TCGA-UF-A71D-01 6 37140900 37140900 G T PIM1 Nonsense_Mutation p.E246* 0.22 TCGA-UF-A71D-01 6 42893304 42893304 C T PTCRA Missense_Mutation p.P244S 0.17 deleterious_low_confidence(0.02) benign(0.192) TCGA-UF-A71D-01 6 46672926 46672926 T A PLA2G7 Missense_Mutation p.N385Y 0.20 deleterious(0.01) probably_damaging(1) TCGA-UF-A71D-01 6 49416584 49416584 T C MUT Missense_Mutation p.I463M 0.30 tolerated_low_confidence(0.76) benign(0.012) TCGA-UF-A71D-01 6 52701090 52701090 A G GSTA5 Silent p.L72L 0.23 TCGA-UF-A71D-01 6 66115122 66115122 C A EYS Missense_Mutation p.S334I 0.21 deleterious(0) benign(0.028) TCGA-UF-A71D-01 6 66204963 66204963 C A EYS Missense_Mutation p.C114F 0.24 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-UF-A71D-01 6 74207459 74207459 C T MTO1 Missense_Mutation p.A626V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-UF-A71D-01 6 74304723 74304723 C T SLC17A5 3'UTR 0.33 TCGA-UF-A71D-01 6 88853474 88853474 G A CNR1 3'UTR 0.27 TCGA-UF-A71D-01 6 94120142 94120142 T C EPHA7 Intron 0.26 TCGA-UF-A71D-01 7 100451982 100451982 G T SLC12A9 Missense_Mutation p.V55F 0.31 deleterious(0) possibly_damaging(0.857) TCGA-UF-A71D-01 7 100678797 100678797 C A MUC17 Missense_Mutation p.P1367H 0.27 unknown(0) TCGA-UF-A71D-01 7 100815522 100815522 G A NAT16 Silent p.H316H 0.24 TCGA-UF-A71D-01 7 105664941 105664941 G A CDHR3 Missense_Mutation p.V731I 0.07 tolerated(0.4) benign(0.001) TCGA-UF-A71D-01 7 106508853 106508853 G T PIK3CG Missense_Mutation p.G283C 0.37 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 7 106964929 106964929 G A COG5 Missense_Mutation p.S386L 0.16 tolerated(0.12) benign(0.094) TCGA-UF-A71D-01 7 107820812 107820813 - T NRCAM Frame_Shift_Ins p.I903Dfs*20 0.27 TCGA-UF-A71D-01 7 11091407 11091407 G A PHF14 Silent p.T827T 0.24 TCGA-UF-A71D-01 7 12263945 12263945 C T TMEM106B Silent p.Y125Y 0.19 TCGA-UF-A71D-01 7 126173740 126173740 G T GRM8 Missense_Mutation p.R566S 0.24 deleterious(0.05) probably_damaging(0.998) TCGA-UF-A71D-01 7 13935563 13935563 A G ETV1 Silent p.D454D 0.20 TCGA-UF-A71D-01 7 143633082 143633082 G T OR2F2 Missense_Mutation p.G253C 0.39 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 7 148485671 148485671 C T CUL1 Missense_Mutation p.T501I 0.21 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 7 149519621 149519621 T A SSPO RNA 0.32 TCGA-UF-A71D-01 7 149558815 149558815 G C ZNF862 Missense_Mutation p.E856Q 0.42 tolerated(0.21) probably_damaging(0.999) TCGA-UF-A71D-01 7 149558848 149558848 G C ZNF862 Missense_Mutation p.E867Q 0.38 tolerated(0.24) probably_damaging(0.998) TCGA-UF-A71D-01 7 151856051 151856051 C T KMT2C Missense_Mutation p.R3856K 0.30 benign(0.007) TCGA-UF-A71D-01 7 154519500 154519500 C G DPP6 Missense_Mutation p.I262M 0.30 deleterious(0) probably_damaging(0.99) TCGA-UF-A71D-01 7 158704263 158704263 C T WDR60 Missense_Mutation p.R495W 0.27 deleterious(0) possibly_damaging(0.876) TCGA-UF-A71D-01 7 18788697 18788697 A G HDAC9 Missense_Mutation p.H660R 0.15 deleterious(0) probably_damaging(0.974) TCGA-UF-A71D-01 7 20431047 20431047 C G ITGB8 Missense_Mutation p.L328V 0.24 deleterious(0) possibly_damaging(0.542) TCGA-UF-A71D-01 7 28996795 28996795 T G AC005013.5 5'Flank 0.27 TCGA-UF-A71D-01 7 29440442 29440442 A G CHN2 Missense_Mutation p.K192E 0.30 tolerated(0.68) benign(0.014) TCGA-UF-A71D-01 7 38725061 38725061 A G FAM183B 3'UTR 0.24 TCGA-UF-A71D-01 7 45750141 45750141 C T ADCY1 Missense_Mutation p.P983S 0.21 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 7 50132758 50132758 C A ZPBP Silent p.R11R 0.33 TCGA-UF-A71D-01 7 51095532 51095532 G C COBL Missense_Mutation p.S1087R 0.30 deleterious(0) probably_damaging(0.981) TCGA-UF-A71D-01 7 51096987 51096987 G T COBL Silent p.P602P 0.27 TCGA-UF-A71D-01 7 51258761 51258761 C A COBL Missense_Mutation p.L157F 0.33 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 7 57528729 57528729 A G ZNF716 Missense_Mutation p.K188E 0.30 tolerated(0.29) benign(0.016) TCGA-UF-A71D-01 7 6000454 6000454 G T RSPH10B Nonsense_Mutation p.Y147* 0.37 TCGA-UF-A71D-01 7 62752623 62752623 G A ZNF733P RNA 0.14 TCGA-UF-A71D-01 7 6474645 6474645 G A DAGLB Silent p.I142I 0.21 TCGA-UF-A71D-01 7 70255264 70255264 C T AUTS2 Missense_Mutation p.S1021L 0.26 deleterious(0.01) possibly_damaging(0.759) TCGA-UF-A71D-01 7 72721457 72721457 G A NSUN5 Missense_Mutation p.T145I 0.24 tolerated(0.06) possibly_damaging(0.789) TCGA-UF-A71D-01 7 76631625 76631630 GCAACG - UPK3B Intron 0.41 TCGA-UF-A71D-01 7 82579967 82579967 G A PCLO Missense_Mutation p.R3313W 0.21 unknown(0) TCGA-UF-A71D-01 7 88423864 88423864 A C C7orf62 Missense_Mutation p.I131M 0.27 deleterious(0) probably_damaging(0.994) TCGA-UF-A71D-01 7 88423891 88423891 T C C7orf62 Silent p.T122T 0.23 TCGA-UF-A71D-01 7 88423892 88423892 G T C7orf62 Missense_Mutation p.T122K 0.24 tolerated(0.94) benign(0.001) TCGA-UF-A71D-01 7 91682141 91682141 C T AKAP9 Nonsense_Mutation p.R1824* 0.32 TCGA-UF-A71D-01 7 91729012 91729012 G A AKAP9 Silent p.V3575V 0.24 TCGA-UF-A71D-01 7 92733305 92733305 A G SAMD9 Silent p.S702S 0.20 TCGA-UF-A71D-01 7 94038683 94038683 C G COL1A2 Missense_Mutation p.P281R 0.30 unknown(0) TCGA-UF-A71D-01 7 94540144 94540144 C A PPP1R9A Missense_Mutation p.S240Y 0.18 deleterious(0) possibly_damaging(0.888) TCGA-UF-A71D-01 8 100287351 100287351 C G VPS13B Missense_Mutation p.P898R 0.29 deleterious(0) probably_damaging(0.987) TCGA-UF-A71D-01 8 101146006 101146006 G T FBXO43 3'UTR 0.18 TCGA-UF-A71D-01 8 110477430 110477430 G A PKHD1L1 Nonsense_Mutation p.W2790* 0.43 TCGA-UF-A71D-01 8 110587665 110587665 C T SYBU Missense_Mutation p.V488I 0.15 tolerated(0.73) benign(0.013) TCGA-UF-A71D-01 8 113259258 113259258 C T CSMD3 Missense_Mutation p.E3405K 0.16 tolerated(0.07) benign(0.439) TCGA-UF-A71D-01 8 113694742 113694742 C A CSMD3 Missense_Mutation p.G869V 0.12 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 8 121463247 121463247 T G MTBP Missense_Mutation p.C68W 0.08 deleterious(0) probably_damaging(0.966) TCGA-UF-A71D-01 8 124266826 124266826 T A ZHX1 Missense_Mutation p.K454I 0.19 deleterious(0.04) benign(0.165) TCGA-UF-A71D-01 8 124268127 124268127 T A ZHX1 Silent p.P20P 0.20 TCGA-UF-A71D-01 8 124817558 124817558 G C FAM91A1 Missense_Mutation p.D621H 0.19 deleterious(0.02) benign(0.096) TCGA-UF-A71D-01 8 128428308 128428308 C T POU5F1B Missense_Mutation p.P66L 0.16 tolerated(0.17) benign(0.014) TCGA-UF-A71D-01 8 133053850 133053850 A T OC90 Missense_Mutation p.L89H 0.55 deleterious(0.02) probably_damaging(0.973) TCGA-UF-A71D-01 8 139165436 139165436 T A FAM135B Missense_Mutation p.N428Y 0.23 deleterious(0.01) benign(0.049) TCGA-UF-A71D-01 8 139180165 139180165 C A FAM135B Missense_Mutation p.D411Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 8 145581347 145581347 C A FBXL6 Missense_Mutation p.K172N 0.16 deleterious(0.04) benign(0.007) TCGA-UF-A71D-01 8 18393461 18393461 C A PSD3 Missense_Mutation p.R979L 0.32 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 8 18656828 18656828 G C PSD3 Missense_Mutation p.L687V 0.24 deleterious(0) probably_damaging(0.999) TCGA-UF-A71D-01 8 28633341 28633341 G A INTS9 Missense_Mutation p.R500W 0.08 deleterious(0) benign(0.436) TCGA-UF-A71D-01 8 37730229 37730229 A C RAB11FIP1 Silent p.P697P 0.22 TCGA-UF-A71D-01 8 39775664 39775664 C G IDO1 Missense_Mutation p.L81V 0.10 deleterious(0.02) probably_damaging(1) TCGA-UF-A71D-01 8 54142365 54142365 A T OPRK1 Nonsense_Mutation p.L212* 0.24 TCGA-UF-A71D-01 8 54791898 54791898 C G RGS20 Silent p.L82L 0.26 TCGA-UF-A71D-01 8 56866481 56866481 C A LYN Missense_Mutation p.P243H 0.42 deleterious(0) possibly_damaging(0.496) TCGA-UF-A71D-01 8 59058805 59058805 C G FAM110B Missense_Mutation p.L6V 0.16 deleterious(0) probably_damaging(0.991) TCGA-UF-A71D-01 8 73479875 73479875 A G KCNB2 Splice_Site 0.41 TCGA-UF-A71D-01 8 73848457 73848457 C T KCNB2 Silent p.S289S 0.38 TCGA-UF-A71D-01 8 77764100 77764100 G C ZFHX4 Missense_Mutation p.G1648A 0.30 possibly_damaging(0.899) TCGA-UF-A71D-01 8 77766624 77766624 G T ZFHX4 Missense_Mutation p.Q2489H 0.35 probably_damaging(0.984) TCGA-UF-A71D-01 8 86388068 86388068 G A CA2 Silent p.V162V 0.27 TCGA-UF-A71D-01 8 93003933 93003933 G T RUNX1T1 Missense_Mutation p.H320N 0.23 deleterious(0.01) possibly_damaging(0.877) TCGA-UF-A71D-01 9 103271366 103271366 G A TMEFF1 Missense_Mutation p.C129Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-UF-A71D-01 9 106900386 106900386 G T SMC2 Missense_Mutation p.L1119F 0.38 deleterious(0) probably_damaging(1) TCGA-UF-A71D-01 9 107379976 107379976 C T OR13C9 Silent p.R170R 0.26 TCGA-UF-A71D-01 9 113547130 113547130 G T MUSK Missense_Mutation p.D474Y 0.40 deleterious(0.05) possibly_damaging(0.707) TCGA-UF-A71D-01 9 119202989 119202989 C A ASTN2 Missense_Mutation p.E1176D 0.30 tolerated(0.92) unknown(0) TCGA-UF-A71D-01 9 125588917 125588917 G T PDCL Silent p.G50G 0.25 TCGA-UF-A71D-01 9 126214562 126214562 T A DENND1A Missense_Mutation p.Y431F 0.27 deleterious(0.02) probably_damaging(0.985) TCGA-UF-A71D-01 9 130504178 130504178 C A SH2D3C Missense_Mutation p.E659D 0.34 deleterious(0.03) possibly_damaging(0.543) TCGA-UF-A71D-01 9 131860427 131860427 C T CRAT Silent p.R443R 0.22 TCGA-UF-A71D-01 9 133333932 133333932 C T ASS1 Nonsense_Mutation p.Q107* 0.24 TCGA-UF-A71D-01 9 133760374 133760374 G A ABL1 Silent p.P918P 0.27 TCGA-UF-A71D-01 9 136343499 136343499 G C SLC2A6 Silent p.A44A 0.29 TCGA-UF-A71D-01 9 136501617 136501617 C A DBH Missense_Mutation p.P42T 0.37 deleterious(0.04) benign(0.043) TCGA-UF-A71D-01 9 34256863 34256866 CTTA - KIF24 Frame_Shift_Del p.S913Rfs*31 0.11 TCGA-UF-A71D-01 9 34521408 34521408 C T ENHO 3'UTR 0.12 TCGA-UF-A71D-01 9 35548376 35548376 C T RUSC2 Nonsense_Mutation p.Q620* 0.06 TCGA-UF-A71D-01 9 35738386 35738386 G A GBA2 Intron 0.10 TCGA-UF-A71D-01 9 36083381 36083381 T C RECK Silent p.S153S 0.11 TCGA-UF-A71D-01 9 36375984 36375984 G A RNF38 Silent p.S101S 0.11 TCGA-UF-A71D-01 9 37744409 37744409 G T FRMPD1 Nonsense_Mutation p.E794* 0.12 TCGA-UF-A71D-01 9 39100080 39100080 G T CNTNAP3 Silent p.A941A 0.17 TCGA-UF-A71D-01 9 74313120 74313120 C T TMEM2 Silent p.G1126G 0.18 TCGA-UF-A71D-01 9 79635352 79635352 C G FOXB2 Missense_Mutation p.A261G 0.27 tolerated_low_confidence(0.27) possibly_damaging(0.72) TCGA-UF-A71D-01 9 84208113 84208113 C A TLE1 Nonsense_Mutation p.G470* 0.32 TCGA-UF-A71D-01 9 90501498 90501498 C G SPATA31E1 Missense_Mutation p.S699C 0.22 deleterious(0.01) probably_damaging(0.965) TCGA-UF-A71D-01 9 90535348 90535348 G A SPATA31C1 RNA 0.30 TCGA-UF-A71D-01 9 90536009 90536009 C T SPATA31C1 RNA 0.20 TCGA-UF-A71D-01 9 93375479 93375479 C A DIRAS2 3'UTR 0.22 TCGA-UF-A71D-01 9 93375519 93375519 C A DIRAS2 Silent p.V197V 0.24 TCGA-UF-A71D-01 9 93650814 93650814 A T SYK Missense_Mutation p.E580D 0.19 tolerated(0.17) benign(0.012) TCGA-UF-A71D-01 X 104440332 104440332 C A IL1RAPL2 Silent p.P86P 0.44 TCGA-UF-A71D-01 X 111155686 111155686 A G TRPC5 Missense_Mutation p.S245P 0.44 deleterious(0.05) probably_damaging(0.999) TCGA-UF-A71D-01 X 129063646 129063646 G A UTP14A 3'UTR 0.35 TCGA-UF-A71D-01 X 140785837 140785837 C A SPANXD Nonsense_Mutation p.E27* 0.17 TCGA-UF-A71D-01 X 140785838 140785838 C A SPANXD Silent p.P26P 0.17 TCGA-UF-A71D-01 X 142605193 142605193 A G SPANXN3 Silent p.N9N 0.39 TCGA-UF-A71D-01 X 154194841 154194841 G A F8 Silent p.V377V 0.29 TCGA-UF-A71D-01 X 32305701 32305701 A T DMD Missense_Mutation p.S2079T 0.29 benign(0.002) TCGA-UF-A71D-01 X 41089764 41089764 A G USP9X Missense_Mutation p.D2497G 0.44 tolerated(0.15) benign(0.174) TCGA-UF-A71D-01 X 5810948 5810948 C T NLGN4X Silent p.T787T 0.29 TCGA-UF-A71D-01 X 68381193 68381193 C T PJA1 Missense_Mutation p.G630D 0.29 deleterious(0) probably_damaging(0.997) TCGA-UF-A71D-01 X 73524386 73524386 C T ZCCHC13 Silent p.G95G 0.25 TCGA-UF-A71D-01 X 77913908 77913908 C G ZCCHC5 Missense_Mutation p.D4H 0.47 deleterious_low_confidence(0.04) possibly_damaging(0.888) TCGA-UF-A71D-01 X 83128054 83128054 C A CYLC1 Missense_Mutation p.A113E 0.49 tolerated(0.11) probably_damaging(0.994) TCGA-UF-A71D-01 X 83128055 83128055 A C CYLC1 Silent p.A113A 0.49 TCGA-UF-A71D-01 X 86919928 86919928 G A KLHL4 Nonsense_Mutation p.W697* 0.34 TCGA-UF-A71D-01 X 91133063 91133063 C A PCDH11X Silent p.S608S 0.28 TCGA-UF-A71E-01 10 115804440 115804440 G A ADRB1 Nonsense_Mutation p.W183* 0.51 TCGA-UF-A71E-01 10 134006320 134006320 C T DPYSL4 Missense_Mutation p.A96V 0.11 deleterious(0) probably_damaging(1) TCGA-UF-A71E-01 10 3180216 3180216 C T PITRM1 3'UTR 0.33 TCGA-UF-A71E-01 10 33137563 33137563 G A C10ORF68 Missense_Mutation p.R514H 0.41 tolerated(0.88) benign(0.001) TCGA-UF-A71E-01 10 35477202 35477202 A G CREM Missense_Mutation p.T162A 0.23 tolerated(0.07) benign(0.017) TCGA-UF-A71E-01 10 61665982 61665982 C A CCDC6 Missense_Mutation p.Q67H 0.30 deleterious(0.02) probably_damaging(0.916) TCGA-UF-A71E-01 10 69684939 69684939 T C HERC4 Silent p.T956T 0.32 TCGA-UF-A71E-01 10 86132112 86132112 C T CCSER2 Missense_Mutation p.S435F 0.45 tolerated(0.3) benign(0.405) TCGA-UF-A71E-01 10 98469373 98469373 G A PIK3AP1 Silent p.D127D 0.27 TCGA-UF-A71E-01 11 1075769 1075769 C T MUC2 Silent p.S65S 0.43 TCGA-UF-A71E-01 11 108044179 108044179 G T NPAT Nonsense_Mutation p.S511* 0.33 TCGA-UF-A71E-01 11 122830167 122830167 G A C11orf63 3'UTR 0.41 TCGA-UF-A71E-01 11 123625035 123625035 C G OR6X1 Missense_Mutation p.L64F 0.29 tolerated(0.17) possibly_damaging(0.523) TCGA-UF-A71E-01 11 1298422 1298422 G A TOLLIP Silent p.N224N 0.32 TCGA-UF-A71E-01 11 57799050 57799050 C A OR6Q1 Missense_Mutation p.A209D 0.30 deleterious(0.02) benign(0.42) TCGA-UF-A71E-01 11 59480656 59480656 G A OR10V1 Silent p.F221F 0.35 TCGA-UF-A71E-01 11 62259277 62259277 T C AHNAK Silent p.E123E 0.32 TCGA-UF-A71E-01 11 63884783 63884783 C T FLRT1 Silent p.A348A 0.22 TCGA-UF-A71E-01 11 63992034 63992034 T C TRPT1 Silent p.G163G 0.41 TCGA-UF-A71E-01 11 64082285 64082285 C T ESRRA Missense_Mutation p.P215L 0.32 tolerated(0.05) benign(0.008) TCGA-UF-A71E-01 11 67815027 67815027 C T TCIRG1 Silent p.A431A 0.35 TCGA-UF-A71E-01 11 71277308 71277308 T G KRTAP5-10 3'UTR 0.40 TCGA-UF-A71E-01 11 72290045 72290045 C T PDE2A Missense_Mutation p.D789N 0.33 tolerated(0.3) benign(0.021) TCGA-UF-A71E-01 12 112578678 112578678 C T TRAFD1 Missense_Mutation p.S98F 0.20 deleterious(0) possibly_damaging(0.898) TCGA-UF-A71E-01 12 32135922 32135922 C T KIAA1551 Missense_Mutation p.S678F 0.24 deleterious(0) probably_damaging(0.991) TCGA-UF-A71E-01 12 32135923 32135923 C T KIAA1551 Silent p.S678S 0.25 TCGA-UF-A71E-01 12 53621287 53621287 C A RARG Missense_Mutation p.G15W 0.27 deleterious_low_confidence(0) benign(0.339) TCGA-UF-A71E-01 12 55357715 55357715 T A TESPA1 Nonsense_Mutation p.K156* 0.20 TCGA-UF-A71E-01 12 55357716 55357716 G C TESPA1 Missense_Mutation p.D155E 0.19 tolerated(0.35) probably_damaging(0.999) TCGA-UF-A71E-01 12 56212928 56212928 T - ORMDL2 Frame_Shift_Del p.W49Gfs*3 0.27 TCGA-UF-A71E-01 12 80203722 80203722 C G PPP1R12A Missense_Mutation p.W436C 0.46 deleterious(0) probably_damaging(0.998) TCGA-UF-A71E-01 12 81746959 81746959 C T PPFIA2 Missense_Mutation p.D645N 0.24 deleterious(0.03) probably_damaging(0.943) TCGA-UF-A71E-01 12 81746960 81746960 G C PPFIA2 Silent p.S644S 0.24 TCGA-UF-A71E-01 12 99640465 99640465 G T ANKS1B Missense_Mutation p.P645H 0.29 tolerated(0.09) benign(0.002) TCGA-UF-A71E-01 14 102502959 102502959 G A DYNC1H1 Missense_Mutation p.G3630S 0.31 probably_damaging(1) TCGA-UF-A71E-01 14 35577278 35577278 A G PPP2R3C Intron 0.73 TCGA-UF-A71E-01 14 39648653 39648653 G A PNN Silent p.Q260Q 0.31 TCGA-UF-A71E-01 14 95669937 95669937 A G CLMN Silent p.V583V 0.31 TCGA-UF-A71E-01 15 23261901 23261901 G T GOLGA8I Missense_Mutation p.G338V 0.33 tolerated(0.17) benign(0.005) TCGA-UF-A71E-01 15 25225136 25225136 C G SNRPN 3'Flank 0.17 TCGA-UF-A71E-01 15 28421842 28421842 T A HERC2 Missense_Mutation p.T3169S 0.21 possibly_damaging(0.466) TCGA-UF-A71E-01 15 45411394 45411394 G T DUOXA1 Silent p.P314P 0.21 TCGA-UF-A71E-01 15 48566800 48566800 T G SLC12A1 Missense_Mutation p.I812R 0.25 deleterious(0) probably_damaging(0.984) TCGA-UF-A71E-01 15 48707938 48707938 T A FBN1 Missense_Mutation p.I2616F 0.25 possibly_damaging(0.751) TCGA-UF-A71E-01 15 49716384 49716384 A G FGF7 5'UTR 0.21 TCGA-UF-A71E-01 15 54025296 54025296 G A WDR72 Silent p.P17P 0.17 TCGA-UF-A71E-01 15 56387143 56387143 T C RFX7 Missense_Mutation p.H928R 0.09 deleterious_low_confidence(0) benign(0.144) TCGA-UF-A71E-01 15 66191077 66191077 A T MEGF11 Missense_Mutation p.I988K 0.29 deleterious(0.02) benign(0.002) TCGA-UF-A71E-01 15 72647899 72647899 C A HEXA Splice_Site p.X138_splice 0.42 TCGA-UF-A71E-01 15 90229714 90229714 C T PEX11A Silent p.K40K 0.11 TCGA-UF-A71E-01 16 15961249 15961249 T C FOPNL 3'UTR 0.42 TCGA-UF-A71E-01 16 223656 223656 C A HBA2 3'UTR 0.21 TCGA-UF-A71E-01 16 29989088 29989088 G A TAOK2 5'UTR 0.42 TCGA-UF-A71E-01 16 30544131 30544131 G A ZNF747 3'UTR 0.47 TCGA-UF-A71E-01 16 57188276 57188276 C T FAM192A Missense_Mutation p.E231K 0.31 deleterious(0.01) possibly_damaging(0.832) TCGA-UF-A71E-01 16 67574393 67574393 G A FAM65A Missense_Mutation p.D242N 0.30 deleterious(0) probably_damaging(0.981) TCGA-UF-A71E-01 16 7383039 7383039 G A RBFOX1 Missense_Mutation p.G13S 0.36 tolerated_low_confidence(0.36) probably_damaging(0.998) TCGA-UF-A71E-01 16 75481332 75481332 T C TMEM170A 3'UTR 0.36 TCGA-UF-A71E-01 16 89804494 89804494 G A ZNF276 Missense_Mutation p.R562Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-UF-A71E-01 17 10543023 10543023 C T MYH3 Missense_Mutation p.A927T 0.26 deleterious(0) benign(0.039) TCGA-UF-A71E-01 17 19232091 19232091 C T EPN2 Silent p.P405P 0.58 TCGA-UF-A71E-01 17 33430519 33430519 C A RAD51L3-RFFL Silent p.S48S 0.49 TCGA-UF-A71E-01 17 35614747 35614747 G A ACACA Silent p.F568F 0.19 TCGA-UF-A71E-01 17 39341000 39341000 C A KRTAP4-1 Missense_Mutation p.C36F 0.24 deleterious(0) benign(0.402) TCGA-UF-A71E-01 17 41001261 41001261 C T AOC2 Missense_Mutation p.L583F 0.20 deleterious(0) possibly_damaging(0.717) TCGA-UF-A71E-01 17 41174333 41174333 C G VAT1 Missense_Mutation p.D3H 0.76 tolerated_low_confidence(0.09) benign(0) TCGA-UF-A71E-01 17 46148661 46148661 C T CBX1 3'UTR 0.67 TCGA-UF-A71E-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.68 TCGA-UF-A71E-01 17 76170975 76170975 G A TK1 Silent p.F190F 0.59 TCGA-UF-A71E-01 18 14522267 14522267 A T POTEC Missense_Mutation p.N465K 0.33 tolerated(0.05) benign(0.169) TCGA-UF-A71E-01 18 22017938 22017938 A G IMPACT Missense_Mutation p.I101V 0.49 tolerated(0.21) benign(0.035) TCGA-UF-A71E-01 18 22807583 22807583 C T ZNF521 Missense_Mutation p.S100N 0.26 deleterious(0.02) benign(0.197) TCGA-UF-A71E-01 18 320007 320007 G C COLEC12 3'UTR 0.39 TCGA-UF-A71E-01 18 43664472 43664472 G C ATP5A1 Missense_Mutation p.I526M 0.22 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-UF-A71E-01 19 10602745 10602745 G A KEAP1 Missense_Mutation p.P278L 0.56 deleterious(0) probably_damaging(0.982) TCGA-UF-A71E-01 19 1556840 1556840 C T MEX3D Silent p.V226V 0.24 TCGA-UF-A71E-01 19 19232402 19232402 G A TMEM161A Silent p.F244F 0.37 TCGA-UF-A71E-01 19 21240550 21240550 A T ZNF430 Missense_Mutation p.H479L 0.25 deleterious(0) possibly_damaging(0.805) TCGA-UF-A71E-01 19 21607770 21607770 A G ZNF493 Missense_Mutation p.E770G 0.11 deleterious_low_confidence(0.01) benign(0.107) TCGA-UF-A71E-01 19 22363783 22363783 T C ZNF676 Missense_Mutation p.I246V 0.04 deleterious(0.04) benign(0.265) TCGA-UF-A71E-01 19 22817273 22817274 AA T ZNF492 Intron 0.16 TCGA-UF-A71E-01 19 33113490 33113490 C T ANKRD27 Silent p.S555S 0.52 TCGA-UF-A71E-01 19 45851393 45851394 - T KLC3 Frame_Shift_Ins p.N253Qfs*22 0.53 TCGA-UF-A71E-01 19 49094970 49094970 G C SULT2B1 Silent p.L176L 0.15 TCGA-UF-A71E-01 19 51628328 51628328 G A SIGLEC9 Missense_Mutation p.E33K 0.38 deleterious(0.01) possibly_damaging(0.782) TCGA-UF-A71E-01 19 53343071 53343071 G T ZNF468 3'UTR 0.20 TCGA-UF-A71E-01 19 56206141 56206141 G A EPN1 Silent p.A524A 0.21 TCGA-UF-A71E-01 19 57326923 57326923 G T PEG3 Missense_Mutation p.R963S 0.23 tolerated(0.61) benign(0.079) TCGA-UF-A71E-01 19 58864117 58864117 C T A1BG Intron 0.25 TCGA-UF-A71E-01 19 7963763 7963763 C T LRRC8E Missense_Mutation p.P119L 0.19 deleterious(0) probably_damaging(0.998) TCGA-UF-A71E-01 1 111495093 111495093 T C LRIF1 Missense_Mutation p.H138R 0.36 tolerated(0.18) possibly_damaging(0.702) TCGA-UF-A71E-01 1 114240338 114240338 T C PHTF1 Missense_Mutation p.I760V 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-UF-A71E-01 1 117503896 117503896 C G PTGFRN Silent p.S415S 0.26 TCGA-UF-A71E-01 1 160309984 160309984 A G COPA Silent p.F47F 0.18 TCGA-UF-A71E-01 1 161953662 161953662 C T OLFML2B Missense_Mutation p.V686M 0.18 deleterious(0) probably_damaging(1) TCGA-UF-A71E-01 1 16256784 16256784 G A SPEN Missense_Mutation p.R1350K 0.31 possibly_damaging(0.717) TCGA-UF-A71E-01 1 175348837 175348837 C T TNR Missense_Mutation p.R605H 0.23 tolerated(0.13) benign(0.003) TCGA-UF-A71E-01 1 178423653 178423653 G A RASAL2 Missense_Mutation p.R694H 0.18 deleterious(0.02) possibly_damaging(0.864) TCGA-UF-A71E-01 1 190423919 190423919 A T BRINP3 Silent p.A34A 0.23 TCGA-UF-A71E-01 1 197297973 197297973 G C CRB1 Missense_Mutation p.Q164H 0.19 deleterious(0.03) possibly_damaging(0.852) TCGA-UF-A71E-01 1 210010143 210010143 T A DIEXF Intron 0.19 TCGA-UF-A71E-01 1 247588477 247588477 C T NLRP3 Missense_Mutation p.R578C 0.21 deleterious(0) probably_damaging(0.999) TCGA-UF-A71E-01 1 3328721 3328721 G T PRDM16 Missense_Mutation p.A654S 0.28 tolerated(0.51) benign(0.14) TCGA-UF-A71E-01 1 72748110 72748110 C A NEGR1 Missense_Mutation p.S23I 0.10 deleterious(0.03) possibly_damaging(0.692) TCGA-UF-A71E-01 20 33578205 33578205 C G MYH7B Intron 0.58 TCGA-UF-A71E-01 20 4229232 4229232 G A ADRA1D Missense_Mutation p.R125C 0.30 deleterious(0) probably_damaging(0.993) TCGA-UF-A71E-01 20 60734000 60734000 T C SS18L1 Intron 0.28 TCGA-UF-A71E-01 21 11049448 11049448 A T BAGE2 Splice_Site 0.03 TCGA-UF-A71E-01 21 15599512 15599512 G C RBM11 Missense_Mutation p.K248N 0.19 deleterious(0) probably_damaging(0.991) TCGA-UF-A71E-01 22 19119690 19119690 C T TSSK2 Missense_Mutation p.R260W 0.30 deleterious(0) probably_damaging(1) TCGA-UF-A71E-01 22 21334349 21334349 C A AIFM3 Missense_Mutation p.P565T 0.20 deleterious(0) probably_damaging(1) TCGA-UF-A71E-01 22 21989429 21989429 C T CCDC116 Silent p.G359G 0.37 TCGA-UF-A71E-01 22 23165642 23165642 G T IGLV2-8 Missense_Mutation p.E71D 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-UF-A71E-01 22 26886031 26886031 G A SRRD Missense_Mutation p.G211R 0.27 deleterious(0.01) probably_damaging(0.958) TCGA-UF-A71E-01 22 36013337 36013337 A G MB 5'UTR 0.51 TCGA-UF-A71E-01 22 37693680 37693680 G A CYTH4 Missense_Mutation p.E104K 0.23 deleterious(0.03) possibly_damaging(0.487) TCGA-UF-A71E-01 2 119752135 119752135 T A MARCO 3'UTR 0.39 TCGA-UF-A71E-01 2 131704259 131704259 A G ARHGEF4 Intron 0.35 TCGA-UF-A71E-01 2 144966262 144966262 G A GTDC1 Silent p.V29V 0.39 TCGA-UF-A71E-01 2 163029373 163029373 G A FAP Missense_Mutation p.S710L 0.28 deleterious(0) probably_damaging(0.966) TCGA-UF-A71E-01 2 179417916 179417916 C G TTN Missense_Mutation p.R29904P 0.34 TCGA-UF-A71E-01 2 202343121 202343121 G A STRADB Silent p.L289L 0.27 TCGA-UF-A71E-01 2 240984708 240984708 C A OR6B3 Missense_Mutation p.R261L 0.40 deleterious(0.02) probably_damaging(0.993) TCGA-UF-A71E-01 2 32108493 32108493 C A MEMO1 Missense_Mutation p.G207W 0.26 deleterious(0) probably_damaging(0.996) TCGA-UF-A71E-01 2 69627580 69627580 G A NFU1 Silent p.S212S 0.21 TCGA-UF-A71E-01 2 71206427 71206427 G A ANKRD53 Missense_Mutation p.R124Q 0.26 tolerated(0.15) benign(0.212) TCGA-UF-A71E-01 2 96803345 96803345 G A ASTL Silent p.S50S 0.37 TCGA-UF-A71E-01 3 100569567 100569567 G A ABI3BP Missense_Mutation p.R413C 0.18 deleterious(0.04) benign(0.021) TCGA-UF-A71E-01 3 100962998 100962998 G A IMPG2 Missense_Mutation p.S726F 0.35 deleterious(0.02) benign(0.006) TCGA-UF-A71E-01 3 108813786 108813786 G T MORC1 Missense_Mutation p.Q185K 0.09 tolerated(0.4) benign(0.005) TCGA-UF-A71E-01 3 112647686 112647686 C T CD200R1 Missense_Mutation p.S249N 0.31 tolerated(0.08) probably_damaging(0.986) TCGA-UF-A71E-01 3 112991400 112991400 G A BOC Missense_Mutation p.V271I 0.28 tolerated(0.22) benign(0.012) TCGA-UF-A71E-01 3 113005736 113005736 A G BOC 3'UTR 0.16 TCGA-UF-A71E-01 3 122642502 122642502 C A SEMA5B Missense_Mutation p.A466S 0.12 deleterious(0.04) benign(0.076) TCGA-UF-A71E-01 3 123166599 123166599 G A ADCY5 Missense_Mutation p.P265L 0.29 tolerated(0.35) benign(0.001) TCGA-UF-A71E-01 3 126915490 126915490 C A C3orf56 5'UTR 0.21 TCGA-UF-A71E-01 3 136048893 136048893 G C PCCB 3'UTR 0.24 TCGA-UF-A71E-01 3 14861572 14861572 A T FGD5 Missense_Mutation p.N332Y 0.85 deleterious(0) possibly_damaging(0.461) TCGA-UF-A71E-01 3 158991674 158991674 T G IQCJ-SCHIP1 Intron 0.11 TCGA-UF-A71E-01 3 160786652 160786652 T G PPM1L Missense_Mutation p.S264A 0.12 deleterious(0) probably_damaging(1) TCGA-UF-A71E-01 3 164737395 164737395 G A SI Missense_Mutation p.P1140S 0.23 deleterious(0.02) benign(0.287) TCGA-UF-A71E-01 3 172486831 172486831 C T ECT2 Silent p.S442S 0.32 TCGA-UF-A71E-01 3 184005706 184005706 G A ECE2 Missense_Mutation p.A567T 0.15 tolerated(0.37) possibly_damaging(0.754) TCGA-UF-A71E-01 3 184073265 184073265 C T CLCN2 Missense_Mutation p.R408H 0.13 deleterious(0.01) benign(0.02) TCGA-UF-A71E-01 3 196449419 196449419 A T PIGX Missense_Mutation p.I104L 0.15 tolerated(1) benign(0.008) TCGA-UF-A71E-01 3 51429757 51429757 G T RBM15B Silent p.L309L 0.59 TCGA-UF-A71E-01 3 7721970 7721970 G A GRM7 Missense_Mutation p.V896I 0.68 tolerated_low_confidence(0.06) benign(0.015) TCGA-UF-A71E-01 3 89528743 89528743 G T EPHA3 3'UTR 0.13 TCGA-UF-A71E-01 3 97983223 97983223 G A OR5H6 Missense_Mutation p.G32E 0.50 deleterious(0) probably_damaging(0.962) TCGA-UF-A71E-01 4 100532497 100532497 C T MTTP Missense_Mutation p.R626C 0.18 deleterious(0.02) benign(0.39) TCGA-UF-A71E-01 4 134071802 134071802 G A PCDH10 Silent p.L169L 0.16 TCGA-UF-A71E-01 4 177605072 177605072 C A VEGFC 3'UTR 0.20 TCGA-UF-A71E-01 4 55133835 55133835 C A PDGFRA Missense_Mutation p.L350M 0.22 deleterious(0.02) probably_damaging(0.953) TCGA-UF-A71E-01 4 66286159 66286159 C G EPHA5 Missense_Mutation p.K509N 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-UF-A71E-01 4 74270112 74270112 G A ALB Missense_Mutation p.R23H 0.20 deleterious(0) probably_damaging(0.993) TCGA-UF-A71E-01 4 76442057 76442057 T G THAP6 Missense_Mutation p.I52M 0.22 tolerated_low_confidence(0.28) benign(0.012) TCGA-UF-A71E-01 4 79461950 79461950 C T FRAS1 Missense_Mutation p.A3904V 0.15 probably_damaging(0.932) TCGA-UF-A71E-01 4 88986917 88986917 G A PKD2 Silent p.K748K 0.44 TCGA-UF-A71E-01 4 89345072 89345072 T G HERC6 Missense_Mutation p.L592V 0.14 tolerated(0.42) benign(0.048) TCGA-UF-A71E-01 4 94690472 94690472 C T GRID2 Silent p.G824G 0.14 TCGA-UF-A71E-01 5 101583097 101583097 G A SLCO4C1 Missense_Mutation p.T557I 0.21 tolerated(0.45) benign(0.014) TCGA-UF-A71E-01 5 102442588 102442588 T C GIN1 Silent p.K55K 0.31 TCGA-UF-A71E-01 5 113831862 113831862 T G KCNN2 Missense_Mutation p.S575A 0.04 tolerated_low_confidence(1) unknown(0) TCGA-UF-A71E-01 5 121786360 121786360 G T SNCAIP Silent p.R606R 0.34 TCGA-UF-A71E-01 5 133451660 133451660 A T TCF7 Missense_Mutation p.N126I 0.27 tolerated(0.25) probably_damaging(0.991) TCGA-UF-A71E-01 5 137548924 137548924 G T CDC23 Missense_Mutation p.F26L 0.31 tolerated(0.43) benign(0.038) TCGA-UF-A71E-01 5 140167177 140167177 G A PCDHA1 Silent p.S434S 0.38 TCGA-UF-A71E-01 5 140307218 140307218 C A PCDHAC1 Silent p.P247P 0.25 TCGA-UF-A71E-01 5 141004838 141004838 A C HDAC3 Missense_Mutation p.L385R 0.06 tolerated(0.13) possibly_damaging(0.786) TCGA-UF-A71E-01 5 150660678 150660678 G A SLC36A3 Silent p.H388H 0.14 TCGA-UF-A71E-01 5 169506008 169506008 C T DOCK2 Missense_Mutation p.T1675M 0.17 tolerated(0.18) benign(0.064) TCGA-UF-A71E-01 5 178552036 178552036 T A ADAMTS2 Missense_Mutation p.S966C 0.28 deleterious(0.01) probably_damaging(0.923) TCGA-UF-A71E-01 5 26906883 26906883 T A CDH9 Missense_Mutation p.K196N 0.31 deleterious(0) probably_damaging(0.996) TCGA-UF-A71E-01 5 50687144 50687144 G T ISL1 Missense_Mutation p.A268S 0.17 tolerated(0.77) benign(0.002) TCGA-UF-A71E-01 5 76714147 76714147 A G PDE8B Missense_Mutation p.N669D 0.31 deleterious(0.02) possibly_damaging(0.659) TCGA-UF-A71E-01 5 7862969 7862969 G C FASTKD3 Missense_Mutation p.P556A 0.06 deleterious(0.03) benign(0.016) TCGA-UF-A71E-01 5 79031379 79031379 A T CMYA5 Missense_Mutation p.E2264V 0.29 probably_damaging(0.981) TCGA-UF-A71E-01 5 92929488 92929488 C T NR2F1 Silent p.R404R 0.33 TCGA-UF-A71E-01 6 100006239 100006239 T C CCNC Intron 0.31 TCGA-UF-A71E-01 6 131540889 131540889 C T AKAP7 Missense_Mutation p.S264F 0.23 deleterious(0) probably_damaging(0.999) TCGA-UF-A71E-01 6 155764443 155764443 G A NOX3 Silent p.N150N 0.17 TCGA-UF-A71E-01 6 160557620 160557620 A T SLC22A1 Silent p.S333S 0.43 TCGA-UF-A71E-01 6 160645749 160645749 T G SLC22A2 Missense_Mutation p.E530A 0.52 deleterious(0) possibly_damaging(0.786) TCGA-UF-A71E-01 6 27839778 27839778 C T HIST1H3I Missense_Mutation p.E106K 0.33 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-UF-A71E-01 6 31323247 31323247 G T HLA-B Missense_Mutation p.Q248K 0.18 deleterious_low_confidence(0) benign(0.238) TCGA-UF-A71E-01 6 42600362 42600362 C G UBR2 Missense_Mutation p.R452G 0.30 tolerated(0.1) possibly_damaging(0.634) TCGA-UF-A71E-01 6 46976878 46976878 C G GPR110 Missense_Mutation p.V765L 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-UF-A71E-01 6 46982566 46982566 T C GPR110 Missense_Mutation p.I260V 0.44 tolerated(0.63) benign(0.002) TCGA-UF-A71E-01 6 72006455 72006455 G A OGFRL1 Silent p.L209L 0.38 TCGA-UF-A71E-01 6 74304856 74304856 C T SLC17A5 Missense_Mutation p.A478T 0.25 deleterious(0) benign(0.356) TCGA-UF-A71E-01 6 88854286 88854286 C T CNR1 Silent p.A236A 0.24 TCGA-UF-A71E-01 7 111430632 111430632 G T DOCK4 Missense_Mutation p.L1066M 0.35 tolerated(1) benign(0.007) TCGA-UF-A71E-01 7 151962121 151962121 A T KMT2C Splice_Site p.X395_splice 0.03 TCGA-UF-A71E-01 7 2473414 2473414 G T CHST12 Missense_Mutation p.W380C 0.64 deleterious(0) probably_damaging(1) TCGA-UF-A71E-01 7 31682832 31682832 C A CCDC129 Silent p.A642A 0.14 TCGA-UF-A71E-01 7 32909365 32909365 G A KBTBD2 Silent p.P488P 0.16 TCGA-UF-A71E-01 7 4008965 4008965 G T SDK1 Silent p.A541A 0.31 TCGA-UF-A71E-01 7 71177153 71177153 G T WBSCR17 3'UTR 0.17 TCGA-UF-A71E-01 7 71177154 71177154 A T WBSCR17 3'UTR 0.17 TCGA-UF-A71E-01 8 10623050 10623050 G A PINX1 Missense_Mutation p.P283L 0.14 deleterious(0.04) benign(0.118) TCGA-UF-A71E-01 8 113293461 113293461 A G CSMD3 Silent p.P3150P 0.18 TCGA-UF-A71E-01 8 113529452 113529452 A G CSMD3 Missense_Mutation p.S1523P 0.05 deleterious(0.03) probably_damaging(0.976) TCGA-UF-A71E-01 8 124553315 124553315 T G FBXO32 5'UTR 0.27 TCGA-UF-A71E-01 8 139768066 139768066 C T COL22A1 Missense_Mutation p.V637M 0.10 unknown(0) TCGA-UF-A71E-01 8 142221512 142221512 G A SLC45A4 3'UTR 0.14 TCGA-UF-A71E-01 8 48874749 48874749 C G MCM4 Silent p.G124G 0.25 TCGA-UF-A71E-01 8 70539521 70539521 A G SULF1 Missense_Mutation p.K643E 0.33 deleterious(0) probably_damaging(0.996) TCGA-UF-A71E-01 8 88885472 88885472 C T DCAF4L2 Missense_Mutation p.C243Y 0.46 deleterious(0) probably_damaging(0.984) TCGA-UF-A71E-01 9 106876290 106876290 G A SMC2 Missense_Mutation p.R487H 0.18 tolerated(0.28) benign(0.008) TCGA-UF-A71E-01 9 124074478 124074478 G T GSN Intron 0.87 TCGA-UF-A71E-01 9 135865147 135865147 C T GFI1B Missense_Mutation p.R223C 0.11 deleterious(0) possibly_damaging(0.773) TCGA-UF-A71E-01 9 14720106 14720106 G A CER1 Silent p.I262I 0.66 TCGA-UF-A71E-01 9 35682211 35682211 G A TPM2 Intron 0.43 TCGA-UF-A71E-01 X 115574951 115574951 T - SLC6A14 Frame_Shift_Del p.Y217Ifs*13 0.30 TCGA-UF-A71E-01 X 120181725 120181725 G A GLUD2 Missense_Mutation p.D63N 0.76 tolerated(0.36) benign(0.004) TCGA-UF-A71E-01 X 125686182 125686182 C T DCAF12L1 Missense_Mutation p.R137Q 0.34 tolerated(0.6) benign(0.014) TCGA-UF-A71E-01 X 132092430 132092430 G A HS6ST2 Silent p.L67L 0.21 TCGA-UF-A71E-01 X 146366205 146366205 A C MIR514A3 RNA 0.15 TCGA-UF-A71E-01 X 32328384 32328384 G A DMD Missense_Mutation p.R1978C 0.41 benign(0.056) TCGA-UF-A71E-01 X 50350964 50350964 C T SHROOM4 Missense_Mutation p.E1060K 0.73 deleterious(0) probably_damaging(0.971) TCGA-UF-A71E-01 X 69283070 69283070 C A OTUD6A Silent p.P232P 0.68 TCGA-UF-A71E-01 X 86887360 86887360 C G KLHL4 Missense_Mutation p.T492R 0.70 deleterious(0) possibly_damaging(0.628) TCGA-UF-A71E-01 X 91132770 91132770 C A PCDH11X Missense_Mutation p.P511T 0.29 tolerated(0.39) benign(0.026) TCGA-UF-A7J9-01 10 106982876 106982876 C A SORCS3 Missense_Mutation p.P913T 0.11 deleterious(0) possibly_damaging(0.797) TCGA-UF-A7J9-01 10 108924006 108924006 C A SORCS1 Silent p.R93R 0.21 TCGA-UF-A7J9-01 10 118314954 118314954 T G PNLIP Missense_Mutation p.V249G 0.12 deleterious(0.03) benign(0.006) TCGA-UF-A7J9-01 10 15091659 15091659 T C OLAH Missense_Mutation p.Y20H 0.18 tolerated(0.14) benign(0.429) TCGA-UF-A7J9-01 10 16893336 16893336 C - CUBN Frame_Shift_Del p.W3187* 0.18 TCGA-UF-A7J9-01 10 17165674 17165675 - T CUBN Frame_Shift_Ins p.V135Gfs*18 0.18 TCGA-UF-A7J9-01 10 31138152 31138152 C G ZNF438 Missense_Mutation p.L394F 0.19 deleterious(0) probably_damaging(0.967) TCGA-UF-A7J9-01 10 35894431 35894431 G A GJD4 5'UTR 0.29 TCGA-UF-A7J9-01 10 38145391 38145391 G A ZNF248 5'UTR 0.22 TCGA-UF-A7J9-01 10 45473055 45473055 T A C10orf10 Missense_Mutation p.S142C 0.14 deleterious(0.01) benign(0.052) TCGA-UF-A7J9-01 10 60580202 60580202 G A BICC1 Missense_Mutation p.R923K 0.09 tolerated(0.08) probably_damaging(0.996) TCGA-UF-A7J9-01 10 75883518 75883518 C T AP3M1 3'UTR 0.10 TCGA-UF-A7J9-01 10 88759231 88759231 G T RP11-96C23.14 RNA 0.26 TCGA-UF-A7J9-01 10 94294363 94294363 G C IDE Missense_Mutation p.H155D 0.12 tolerated(0.13) possibly_damaging(0.844) TCGA-UF-A7J9-01 10 99226647 99226647 G C MMS19 Missense_Mutation p.L437V 0.15 tolerated(0.3) benign(0.13) TCGA-UF-A7J9-01 11 117395557 117395557 G T DSCAML1 Missense_Mutation p.F360L 0.23 tolerated(0.41) benign(0.061) TCGA-UF-A7J9-01 11 118774061 118774061 G A BCL9L Silent p.H211H 0.26 TCGA-UF-A7J9-01 11 124294278 124294278 G A OR8B4 Nonsense_Mutation p.R164* 0.23 TCGA-UF-A7J9-01 11 124294407 124294407 G A OR8B4 Missense_Mutation p.R121C 0.36 deleterious_low_confidence(0.01) benign(0.012) TCGA-UF-A7J9-01 11 124740596 124740596 T A ROBO3 Silent p.A335A 0.14 TCGA-UF-A7J9-01 11 14101495 14101497 TGC CTGT SPON1 Intron 0.25 TCGA-UF-A7J9-01 11 1475730 1475730 C T BRSK2 Silent p.S566S 0.16 TCGA-UF-A7J9-01 11 21594894 21594894 C T NELL1 Missense_Mutation p.S774L 0.10 tolerated(0.12) benign(0) TCGA-UF-A7J9-01 11 51515281 51515281 C A OR4C46 5'Flank 0.26 TCGA-UF-A7J9-01 11 555112 555112 C A C11orf35 Splice_Site p.X592_splice 0.29 TCGA-UF-A7J9-01 11 55563209 55563209 C A OR5D14 Missense_Mutation p.P60T 0.05 deleterious(0.01) possibly_damaging(0.801) TCGA-UF-A7J9-01 11 56185158 56185158 A T OR5R1 Missense_Mutation p.F184Y 0.09 deleterious(0) benign(0.187) TCGA-UF-A7J9-01 11 56409571 56409571 C - OR5AP2 Frame_Shift_Del p.T116Lfs*8 0.16 TCGA-UF-A7J9-01 11 61188974 61188983 GGAGGAGGTG - CPSF7 Frame_Shift_Del p.P94Lfs*45 0.21 TCGA-UF-A7J9-01 11 64665373 64665373 C T ATG2A Silent p.S1644S 0.16 TCGA-UF-A7J9-01 11 7021161 7021161 G T ZNF214 Missense_Mutation p.R585S 0.15 deleterious(0.02) benign(0.001) TCGA-UF-A7J9-01 11 70331795 70331795 C G SHANK2 Missense_Mutation p.D1536H 0.06 deleterious(0) possibly_damaging(0.861) TCGA-UF-A7J9-01 11 78285432 78285432 G A NARS2 Silent p.L34L 0.28 TCGA-UF-A7J9-01 11 93463808 93463808 G A KIAA1731 3'Flank 0.11 TCGA-UF-A7J9-01 12 108589888 108589888 C T WSCD2 Silent p.F93F 0.25 TCGA-UF-A7J9-01 12 11060912 11060912 C T TAS2R13 3'UTR 0.09 TCGA-UF-A7J9-01 12 121880535 121880535 C T KDM2B Silent p.K903K 0.30 TCGA-UF-A7J9-01 12 124856680 124856680 C A NCOR2 Missense_Mutation p.G899W 0.21 probably_damaging(0.983) TCGA-UF-A7J9-01 12 132393503 132393503 C T ULK1 Missense_Mutation p.S184F 0.20 deleterious(0) probably_damaging(0.999) TCGA-UF-A7J9-01 12 30867898 30867898 T A CAPRIN2 Missense_Mutation p.Y832F 0.32 tolerated(0.4) probably_damaging(0.981) TCGA-UF-A7J9-01 12 30867899 30867899 A T CAPRIN2 Missense_Mutation p.Y832N 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-UF-A7J9-01 12 54396386 54396386 A G HOXC9 Silent p.K237K 0.24 TCGA-UF-A7J9-01 12 57584756 57584756 G C LRP1 Missense_Mutation p.K2400N 0.25 probably_damaging(0.999) TCGA-UF-A7J9-01 12 6787456 6787456 C T ZNF384 Missense_Mutation p.E175K 0.17 tolerated(0.87) benign(0.023) TCGA-UF-A7J9-01 12 70949734 70949734 T C PTPRB Missense_Mutation p.K1637E 0.18 deleterious(0) possibly_damaging(0.841) TCGA-UF-A7J9-01 12 72315214 72315214 C G TBC1D15 Missense_Mutation p.L612V 0.22 tolerated(0.09) benign(0.007) TCGA-UF-A7J9-01 12 72388285 72388285 A G TPH2 Silent p.S336S 0.22 TCGA-UF-A7J9-01 12 79689870 79689870 G C SYT1 Missense_Mutation p.A166P 0.22 deleterious(0) probably_damaging(0.999) TCGA-UF-A7J9-01 12 81688719 81688719 C G PPFIA2 Missense_Mutation p.Q940H 0.18 deleterious(0) probably_damaging(0.976) TCGA-UF-A7J9-01 12 99056538 99056538 G - APAF1 Frame_Shift_Del p.A304Qfs*11 0.15 TCGA-UF-A7J9-01 13 24858302 24858302 G T SPATA13 Missense_Mutation p.A732S 0.16 deleterious(0.03) benign(0.138) TCGA-UF-A7J9-01 13 27239176 27239176 G A WASF3 Missense_Mutation p.E49K 0.27 deleterious(0) probably_damaging(0.998) TCGA-UF-A7J9-01 13 53418573 53418573 G A PCDH8 3'UTR 0.42 TCGA-UF-A7J9-01 13 78335059 78335059 C A SLAIN1 Missense_Mutation p.P340Q 0.29 deleterious(0) probably_damaging(0.972) TCGA-UF-A7J9-01 14 24800508 24800508 C T ADCY4 Missense_Mutation p.E242K 0.18 tolerated(0.09) probably_damaging(0.99) TCGA-UF-A7J9-01 14 36074810 36074810 T A RALGAPA1 Silent p.V1839V 0.25 TCGA-UF-A7J9-01 14 60212702 60212702 C A RTN1 Nonsense_Mutation p.G247* 0.30 TCGA-UF-A7J9-01 14 88938785 88938785 C T PTPN21 Missense_Mutation p.E892K 0.25 deleterious(0.01) possibly_damaging(0.818) TCGA-UF-A7J9-01 14 95056438 95056438 C T SERPINA5 Missense_Mutation p.S227L 0.30 tolerated(0.1) benign(0.151) TCGA-UF-A7J9-01 14 96707634 96707634 C A BDKRB2 Missense_Mutation p.S323R 0.26 deleterious(0.04) probably_damaging(0.951) TCGA-UF-A7J9-01 14 99642174 99642174 C T BCL11B Silent p.E333E 0.33 TCGA-UF-A7J9-01 15 33893746 33893746 G A RYR3 Missense_Mutation p.V639I 0.13 probably_damaging(0.998) TCGA-UF-A7J9-01 15 34015019 34015019 G T RYR3 Missense_Mutation p.L2241F 0.15 probably_damaging(0.999) TCGA-UF-A7J9-01 15 34040316 34040316 A G RYR3 Missense_Mutation p.E2664G 0.28 probably_damaging(0.981) TCGA-UF-A7J9-01 15 34440901 34440901 C G KATNBL1 Missense_Mutation p.M163I 0.12 deleterious(0.01) benign(0.007) TCGA-UF-A7J9-01 15 44102108 44102108 C T MFAP1 Missense_Mutation p.E298K 0.22 tolerated(0.07) benign(0.173) TCGA-UF-A7J9-01 15 48443684 48443684 G A MYEF2 Missense_Mutation p.S431F 0.29 deleterious(0) benign(0.309) TCGA-UF-A7J9-01 15 52245395 52245395 T A LEO1 Missense_Mutation p.N469I 0.22 deleterious(0.01) possibly_damaging(0.529) TCGA-UF-A7J9-01 15 53081731 53081731 T G ONECUT1 Silent p.T117T 0.17 TCGA-UF-A7J9-01 15 62165562 62165562 T C VPS13C Silent p.K3487K 0.28 TCGA-UF-A7J9-01 15 62182551 62182551 C G VPS13C Missense_Mutation p.V3052L 0.36 tolerated(0.05) possibly_damaging(0.656) TCGA-UF-A7J9-01 15 63921014 63921014 G T HERC1 Missense_Mutation p.L4323I 0.19 probably_damaging(0.997) TCGA-UF-A7J9-01 15 70350626 70350626 T C TLE3 Missense_Mutation p.D308G 0.26 tolerated(0.08) benign(0.149) TCGA-UF-A7J9-01 15 74472517 74472517 C T STRA6 Silent p.R675R 0.29 TCGA-UF-A7J9-01 15 81625365 81625366 - T TMC3 Frame_Shift_Ins p.H900Tfs*17 0.10 TCGA-UF-A7J9-01 15 90447129 90447129 C T C15orf38-AP3S2 Missense_Mutation p.E130K 0.19 tolerated_low_confidence(0.1) benign(0.171) TCGA-UF-A7J9-01 16 20844357 20844357 A T AC004381.6 Missense_Mutation p.K432M 0.28 deleterious(0) probably_damaging(0.997) TCGA-UF-A7J9-01 16 21652820 21652820 G C IGSF6 3'UTR 0.20 TCGA-UF-A7J9-01 16 23536611 23536611 T C EARS2 Missense_Mutation p.Y481C 0.22 deleterious(0) possibly_damaging(0.823) TCGA-UF-A7J9-01 16 23574002 23574002 G A UBFD1 Silent p.V229V 0.25 TCGA-UF-A7J9-01 16 24358052 24358052 C A CACNG3 Intron 0.39 TCGA-UF-A7J9-01 16 24366162 24366162 A T CACNG3 Missense_Mutation p.R102W 0.25 deleterious(0) probably_damaging(0.95) TCGA-UF-A7J9-01 16 2636824 2636824 G T PDPK1 Nonsense_Mutation p.E425* 0.23 TCGA-UF-A7J9-01 16 31045645 31045648 GAGT - STX4 Splice_Site p.X78_splice 0.28 TCGA-UF-A7J9-01 16 4934828 4934828 G C PPL Missense_Mutation p.I1276M 0.23 deleterious(0.03) benign(0.105) TCGA-UF-A7J9-01 16 4935231 4935231 G A PPL Missense_Mutation p.A1142V 0.28 tolerated(0.09) benign(0.088) TCGA-UF-A7J9-01 16 55794562 55794562 C G CES1P1 RNA 0.32 TCGA-UF-A7J9-01 16 84529448 84529448 C G TLDC1 Silent p.L75L 0.34 TCGA-UF-A7J9-01 17 10209851 10209851 C T MYH13 Silent p.L1797L 0.39 TCGA-UF-A7J9-01 17 14248810 14248810 G A HS3ST3B1 Silent p.A340A 0.30 TCGA-UF-A7J9-01 17 28544279 28544279 G A SLC6A4 Silent p.L248L 0.28 TCGA-UF-A7J9-01 17 31618636 31618636 G A ASIC2 Silent p.T166T 0.32 TCGA-UF-A7J9-01 17 34324795 34324795 C G CCL15 3'UTR 0.28 TCGA-UF-A7J9-01 17 37816726 37816726 A T STARD3 Missense_Mutation p.I301F 0.28 tolerated(0.23) probably_damaging(0.99) TCGA-UF-A7J9-01 17 39675127 39675133 TGGCAGG AGGCA KRT15 5'UTR 0.27 TCGA-UF-A7J9-01 17 40458300 40458300 G T STAT5A Silent p.P505P 0.24 TCGA-UF-A7J9-01 17 41958680 41958680 G A MPP2 Missense_Mutation p.P284L 0.23 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 17 46621910 46621910 G A HOXB2 Missense_Mutation p.P122S 0.29 tolerated(0.22) benign(0.004) TCGA-UF-A7J9-01 17 47783631 47783631 T C SLC35B1 Missense_Mutation p.I92V 0.22 tolerated(0.19) benign(0.001) TCGA-UF-A7J9-01 17 56388466 56388466 C T BZRAP1 Missense_Mutation p.G1064R 0.24 deleterious(0.02) benign(0.032) TCGA-UF-A7J9-01 17 58286747 58286747 C A USP32 Missense_Mutation p.W861L 0.20 tolerated(0.78) probably_damaging(0.988) TCGA-UF-A7J9-01 17 61888504 61888504 A G DDX42 Missense_Mutation p.I457V 0.25 tolerated(0.83) benign(0.113) TCGA-UF-A7J9-01 17 61957720 61957720 G C GH2 3'UTR 0.24 TCGA-UF-A7J9-01 17 7366892 7366892 G C ZBTB4 Missense_Mutation p.S470C 0.41 benign(0) TCGA-UF-A7J9-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.41 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 17 80576938 80576938 G C WDR45B Missense_Mutation p.Q229E 0.22 tolerated(0.15) benign(0.003) TCGA-UF-A7J9-01 17 8402701 8402701 C G MYH10 Missense_Mutation p.E1280Q 0.41 possibly_damaging(0.828) TCGA-UF-A7J9-01 18 12358916 12358916 G A AFG3L2 Missense_Mutation p.T260M 0.22 deleterious(0) possibly_damaging(0.84) TCGA-UF-A7J9-01 18 13885522 13885522 C G MC2R 5'UTR 0.10 TCGA-UF-A7J9-01 18 31673444 31673444 G C NOL4 Missense_Mutation p.H253D 0.26 tolerated(0.13) benign(0.029) TCGA-UF-A7J9-01 18 65180625 65180625 T C DSEL Silent p.A417A 0.27 TCGA-UF-A7J9-01 18 71959202 71959202 G T CYB5A 5'UTR 0.36 TCGA-UF-A7J9-01 18 74153353 74153353 C A ZNF516 Missense_Mutation p.R553L 0.36 deleterious(0.05) benign(0.416) TCGA-UF-A7J9-01 18 77918076 77918076 T C PARD6G Missense_Mutation p.I237V 0.37 tolerated(0.94) benign(0.054) TCGA-UF-A7J9-01 19 1397496 1397496 C G GAMT 3'Flank 0.24 TCGA-UF-A7J9-01 19 20044215 20044215 G T ZNF93 Missense_Mutation p.G151W 0.11 deleterious(0.03) possibly_damaging(0.863) TCGA-UF-A7J9-01 19 2073376 2073376 G C MOB3A 3'UTR 0.25 TCGA-UF-A7J9-01 19 21131712 21131712 G T ZNF85 Missense_Mutation p.C131F 0.24 deleterious(0.04) benign(0.001) TCGA-UF-A7J9-01 19 21240151 21240151 A T ZNF430 Missense_Mutation p.K346I 0.23 deleterious(0.04) benign(0.369) TCGA-UF-A7J9-01 19 2431827 2431827 C A LMNB2 Missense_Mutation p.G555V 0.28 deleterious(0) probably_damaging(0.995) TCGA-UF-A7J9-01 19 30102828 30102828 G T POP4 Missense_Mutation p.S115I 0.22 tolerated(0.11) benign(0.042) TCGA-UF-A7J9-01 19 35850107 35850107 C G FFAR3 Missense_Mutation p.F105L 0.14 tolerated(0.24) benign(0.138) TCGA-UF-A7J9-01 19 42813950 42813950 G A PRR19 Missense_Mutation p.E72K 0.21 tolerated(0.07) benign(0.039) TCGA-UF-A7J9-01 19 48305074 48305074 C T TPRX1 Silent p.V398V 0.24 TCGA-UF-A7J9-01 19 51218945 51218945 C T SHANK1 Missense_Mutation p.E168K 0.20 possibly_damaging(0.541) TCGA-UF-A7J9-01 19 51218960 51218960 G T SHANK1 Missense_Mutation p.Q163K 0.21 benign(0.084) TCGA-UF-A7J9-01 19 53116946 53116946 C T ZNF83 Missense_Mutation p.C291Y 0.07 deleterious(0) unknown(0) TCGA-UF-A7J9-01 19 54760128 54760128 C G LILRB5 Missense_Mutation p.D145H 0.26 tolerated(0.07) benign(0.069) TCGA-UF-A7J9-01 19 55349226 55349226 C T KIR2DS4 Missense_Mutation p.P89L 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.81) TCGA-UF-A7J9-01 19 5727306 5727306 A G CATSPERD Missense_Mutation p.T52A 0.07 tolerated(0.2) benign(0.027) TCGA-UF-A7J9-01 19 58573073 58573073 G - ZNF135 Frame_Shift_Del 0.23 TCGA-UF-A7J9-01 19 59067742 59067742 C T UBE2M Missense_Mutation p.D118N 0.15 deleterious(0) benign(0.164) TCGA-UF-A7J9-01 19 810548 810548 C G PTBP1 Nonsense_Mutation p.S490* 0.31 TCGA-UF-A7J9-01 19 9060598 9060598 G T MUC16 Missense_Mutation p.Q8950K 0.30 unknown(0) TCGA-UF-A7J9-01 1 111215769 111215769 T A KCNA3 Missense_Mutation p.T555S 0.28 tolerated_low_confidence(0.62) benign(0.001) TCGA-UF-A7J9-01 1 115438112 115438112 A G SYCP1 Silent p.E434E 0.33 TCGA-UF-A7J9-01 1 120286724 120286724 C T PHGDH 3'UTR 0.26 TCGA-UF-A7J9-01 1 1267740 1267740 G A TAS1R3 Missense_Mutation p.V277M 0.50 tolerated(0.06) benign(0.339) TCGA-UF-A7J9-01 1 1290669 1290669 G C MXRA8 Missense_Mutation p.H145D 0.13 deleterious(0.02) probably_damaging(0.938) TCGA-UF-A7J9-01 1 148932870 148932870 G T RP11-14N7.2 RNA 0.05 TCGA-UF-A7J9-01 1 152058473 152058473 G C TCHHL1 Nonsense_Mutation p.S562* 0.21 TCGA-UF-A7J9-01 1 155006457 155006457 T A DCST1 5'UTR 0.26 TCGA-UF-A7J9-01 1 158604344 158604344 C A SPTA1 Missense_Mutation p.A1852S 0.18 tolerated(0.07) benign(0.014) TCGA-UF-A7J9-01 1 158636108 158636108 G T SPTA1 Missense_Mutation p.Q740K 0.20 tolerated(0.17) probably_damaging(0.998) TCGA-UF-A7J9-01 1 158687738 158687738 G T OR6K3 Missense_Mutation p.H56Q 0.10 deleterious(0.03) benign(0.411) TCGA-UF-A7J9-01 1 158913681 158913681 A T PYHIN1 Missense_Mutation p.K368N 0.32 deleterious(0.05) benign(0.388) TCGA-UF-A7J9-01 1 167823634 167823634 C G ADCY10 Silent p.T755T 0.09 TCGA-UF-A7J9-01 1 170001043 170001043 C A KIFAP3 Missense_Mutation p.Q275H 0.16 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 1 176175841 176175841 C A RFWD2 Missense_Mutation p.A92S 0.14 tolerated_low_confidence(0.46) benign(0.024) TCGA-UF-A7J9-01 1 186158649 186158649 G T HMCN1 Missense_Mutation p.C5516F 0.25 probably_damaging(0.974) TCGA-UF-A7J9-01 1 197026314 197026314 C A F13B Missense_Mutation p.V334L 0.19 tolerated(0.41) benign(0.006) TCGA-UF-A7J9-01 1 206619613 206619613 C G SRGAP2 Silent p.V603V 0.22 TCGA-UF-A7J9-01 1 215901716 215901716 C T USH2A Missense_Mutation p.G3908S 0.36 benign(0.126) TCGA-UF-A7J9-01 1 232650782 232650782 G A SIPA1L2 Missense_Mutation p.R102W 0.21 deleterious(0) possibly_damaging(0.556) TCGA-UF-A7J9-01 1 241761125 241761125 T A OPN3 Missense_Mutation p.I290L 0.27 tolerated(0.09) benign(0.002) TCGA-UF-A7J9-01 1 247902430 247902430 C A OR14K1 Missense_Mutation p.L172I 0.18 tolerated(0.78) benign(0.001) TCGA-UF-A7J9-01 1 2939273 2939273 C A ACTRT2 Silent p.T341T 0.31 TCGA-UF-A7J9-01 1 32849516 32849516 G A BSDC1 Missense_Mutation p.P108L 0.28 deleterious(0.03) probably_damaging(0.983) TCGA-UF-A7J9-01 1 43395268 43395268 T C SLC2A1 Missense_Mutation p.N288S 0.32 deleterious(0) possibly_damaging(0.884) TCGA-UF-A7J9-01 20 15412049 15412049 G A MACROD2 Splice_Site p.X181_splice 0.24 TCGA-UF-A7J9-01 20 20493302 20493302 C G RALGAPA2 Missense_Mutation p.E1571Q 0.26 deleterious(0) possibly_damaging(0.502) TCGA-UF-A7J9-01 20 30556151 30556151 G T XKR7 Missense_Mutation p.C58F 0.23 deleterious(0.03) probably_damaging(1) TCGA-UF-A7J9-01 20 37657063 37657063 G T DHX35 Missense_Mutation p.D602Y 0.23 deleterious(0) probably_damaging(0.986) TCGA-UF-A7J9-01 20 45224904 45224904 T A SLC13A3 Missense_Mutation p.N229I 0.22 tolerated(0.06) possibly_damaging(0.493) TCGA-UF-A7J9-01 20 49620923 49620923 C T KCNG1 Missense_Mutation p.E399K 0.24 deleterious(0) probably_damaging(0.999) TCGA-UF-A7J9-01 20 56186819 56186819 C A ZBP1 Nonsense_Mutation p.E280* 0.35 TCGA-UF-A7J9-01 20 61978159 61978159 C G CHRNA4 Missense_Mutation p.M605I 0.22 tolerated(0.27) benign(0.006) TCGA-UF-A7J9-01 20 62562371 62562371 G A DNAJC5 Silent p.E163E 0.16 TCGA-UF-A7J9-01 21 11058303 11058303 G T BAGE2 RNA 0.03 TCGA-UF-A7J9-01 21 32595868 32595868 C T TIAM1 Missense_Mutation p.D617N 0.13 deleterious(0) benign(0.166) TCGA-UF-A7J9-01 21 41457578 41457578 G T DSCAM Silent p.A1361A 0.24 TCGA-UF-A7J9-01 21 43714735 43714735 G T ABCG1 Silent p.T591T 0.34 TCGA-UF-A7J9-01 21 45746601 45746601 C T PFKL Silent p.H733H 0.29 TCGA-UF-A7J9-01 22 20909266 20909266 G A MED15 Silent p.A94A 0.39 TCGA-UF-A7J9-01 22 25294004 25294004 C T SGSM1 Silent p.P751P 0.35 TCGA-UF-A7J9-01 22 29444377 29444377 G A ZNRF3 Missense_Mutation p.E305K 0.18 deleterious(0.03) probably_damaging(1) TCGA-UF-A7J9-01 22 30736775 30736775 C T SF3A1 Silent p.Q366Q 0.14 TCGA-UF-A7J9-01 22 37769986 37769986 G C ELFN2 Missense_Mutation p.S530W 0.43 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 22 42128271 42128271 C A MEI1 Missense_Mutation p.S373R 0.34 deleterious(0) probably_damaging(0.991) TCGA-UF-A7J9-01 22 42415411 42415411 C G WBP2NL Silent p.L53L 0.27 TCGA-UF-A7J9-01 22 46773075 46773075 G T CELSR1 Silent p.L2489L 0.41 TCGA-UF-A7J9-01 22 50278751 50278751 G A ZBED4 Missense_Mutation p.G481S 0.16 tolerated(0.92) benign(0.004) TCGA-UF-A7J9-01 2 103322355 103322355 T C SLC9A2 Silent p.L676L 0.31 TCGA-UF-A7J9-01 2 112786262 112786262 C G MERTK Missense_Mutation p.L941V 0.34 tolerated(0.5) benign(0.004) TCGA-UF-A7J9-01 2 118579836 118579836 A G DDX18 Silent p.P355P 0.16 TCGA-UF-A7J9-01 2 125204342 125204342 C T CNTNAP5 Missense_Mutation p.A249V 0.17 tolerated(0.52) benign(0.005) TCGA-UF-A7J9-01 2 149216276 149216276 G A MBD5 5'UTR 0.26 TCGA-UF-A7J9-01 2 152321641 152321641 G A RIF1 Silent p.S1869S 0.28 TCGA-UF-A7J9-01 2 158177959 158177959 G T ERMN Missense_Mutation p.P240T 0.19 tolerated(0.06) probably_damaging(1) TCGA-UF-A7J9-01 2 158177960 158177960 G T ERMN Silent p.S239S 0.20 TCGA-UF-A7J9-01 2 163070542 163070542 C A FAP Missense_Mutation p.R303L 0.19 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 2 1653421 1653421 G C PXDN Missense_Mutation p.P711A 0.12 deleterious(0.04) possibly_damaging(0.802) TCGA-UF-A7J9-01 2 179259114 179259114 G C OSBPL6 Missense_Mutation p.R908T 0.20 deleterious(0) probably_damaging(0.986) TCGA-UF-A7J9-01 2 179431719 179431719 C G TTN Missense_Mutation p.M26380I 0.27 TCGA-UF-A7J9-01 2 179546430 179546430 C T TTN Missense_Mutation p.E11044K 0.23 TCGA-UF-A7J9-01 2 200137051 200137051 C A SATB2 Silent p.L695L 0.14 TCGA-UF-A7J9-01 2 207041495 207041495 T C GPR1 Missense_Mutation p.I159M 0.23 tolerated(0.16) benign(0.033) TCGA-UF-A7J9-01 2 207041523 207041523 G T GPR1 Missense_Mutation p.T150N 0.22 tolerated(0.08) probably_damaging(0.936) TCGA-UF-A7J9-01 2 210559487 210559487 G T MAP2 Nonsense_Mutation p.E865* 0.20 TCGA-UF-A7J9-01 2 211464276 211464276 C T CPS1 Silent p.L520L 0.23 TCGA-UF-A7J9-01 2 21234153 21234153 C G APOB Missense_Mutation p.E1863Q 0.26 benign(0.054) TCGA-UF-A7J9-01 2 220404341 220404341 C T CHPF Missense_Mutation p.E698K 0.29 tolerated(0.28) benign(0.326) TCGA-UF-A7J9-01 2 220473437 220473437 G T STK11IP Missense_Mutation p.R590L 0.29 deleterious(0) possibly_damaging(0.538) TCGA-UF-A7J9-01 2 223096999 223096999 G A PAX3 Missense_Mutation p.S197L 0.32 deleterious(0.05) benign(0.002) TCGA-UF-A7J9-01 2 224840580 224840580 C A SERPINE2 3'UTR 0.23 TCGA-UF-A7J9-01 2 241702674 241702674 C T KIF1A Missense_Mutation p.E620K 0.18 tolerated(0.08) benign(0.014) TCGA-UF-A7J9-01 2 241702692 241702692 C T KIF1A Missense_Mutation p.E614K 0.21 tolerated(0.16) benign(0.087) TCGA-UF-A7J9-01 2 61546400 61546400 C G USP34 Missense_Mutation p.D1026H 0.23 deleterious(0) probably_damaging(0.997) TCGA-UF-A7J9-01 2 70188050 70188050 C T ASPRV1 Nonsense_Mutation p.W257* 0.22 TCGA-UF-A7J9-01 2 74761440 74761440 C T LOXL3 Intron 0.26 TCGA-UF-A7J9-01 2 99695171 99695171 T C TSGA10 Missense_Mutation p.D278G 0.06 deleterious(0) possibly_damaging(0.626) TCGA-UF-A7J9-01 3 100093991 100093991 T A TOMM70A Silent p.R366R 0.17 TCGA-UF-A7J9-01 3 108284262 108284262 C G KIAA1524 Missense_Mutation p.L485F 0.11 deleterious(0) probably_damaging(0.998) TCGA-UF-A7J9-01 3 124653561 124653561 G T MUC13 5'UTR 0.15 TCGA-UF-A7J9-01 3 130799420 130799420 G T NEK11 Silent p.T108T 0.13 TCGA-UF-A7J9-01 3 133663989 133663989 G A SLCO2A1 Missense_Mutation p.H471Y 0.35 tolerated(0.11) possibly_damaging(0.703) TCGA-UF-A7J9-01 3 142255042 142255042 C G ATR Missense_Mutation p.D1243H 0.10 deleterious(0.01) benign(0.143) TCGA-UF-A7J9-01 3 158980417 158980417 C G IQCJ-SCHIP1 Nonsense_Mutation p.S79* 0.12 TCGA-UF-A7J9-01 3 172631466 172631466 C G SPATA16 Missense_Mutation p.W524C 0.12 deleterious(0) possibly_damaging(0.878) TCGA-UF-A7J9-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.14 deleterious(0.02) probably_damaging(0.959) TCGA-UF-A7J9-01 3 184049859 184049859 T G EIF4G1 Missense_Mutation p.L1542V 0.16 deleterious(0) benign(0.248) TCGA-UF-A7J9-01 3 184105822 184105822 G C CHRD Splice_Site p.X852_splice 0.21 TCGA-UF-A7J9-01 3 184648306 184648306 A T VPS8 Missense_Mutation p.S950C 0.05 deleterious(0) possibly_damaging(0.548) TCGA-UF-A7J9-01 3 195245854 195245854 C T PPP1R2 Missense_Mutation p.A178T 0.23 tolerated(0.4) benign(0.004) TCGA-UF-A7J9-01 3 3084692 3084692 A C CNTN4 Missense_Mutation p.E848A 0.08 tolerated(0.18) benign(0) TCGA-UF-A7J9-01 3 3084693 3084693 A T CNTN4 Missense_Mutation p.E848D 0.08 tolerated(0.48) benign(0.041) TCGA-UF-A7J9-01 3 64085134 64085134 G T PRICKLE2 Silent p.R710R 0.22 TCGA-UF-A7J9-01 3 77651526 77651526 G A ROBO2 Missense_Mutation p.S1023N 0.29 tolerated(0.4) benign(0.213) TCGA-UF-A7J9-01 4 109669202 109669202 C T ETNPPL Silent p.L347L 0.22 TCGA-UF-A7J9-01 4 123857283 123857283 C T SPATA5 Missense_Mutation p.R436C 0.03 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 4 139993125 139993125 T A ELF2 Missense_Mutation p.I129F 0.04 deleterious(0.01) possibly_damaging(0.802) TCGA-UF-A7J9-01 4 153247165 153247165 G C FBXW7 Nonsense_Mutation p.S546* 0.37 TCGA-UF-A7J9-01 4 155157458 155157458 C A DCHS2 Silent p.L2327L 0.30 TCGA-UF-A7J9-01 4 155157664 155157664 A G DCHS2 Missense_Mutation p.Y2259H 0.06 tolerated(0.62) benign(0.004) TCGA-UF-A7J9-01 4 155507937 155507937 G A FGA Missense_Mutation p.S215F 0.08 deleterious(0.02) benign(0.377) TCGA-UF-A7J9-01 4 187628173 187628173 G A FAT1 Nonsense_Mutation p.R937* 0.12 TCGA-UF-A7J9-01 4 435806 435806 G A ZNF721 Missense_Mutation p.A817V 0.36 tolerated(0.14) possibly_damaging(0.611) TCGA-UF-A7J9-01 4 66467457 66467457 G A EPHA5 Missense_Mutation p.P271L 0.28 tolerated(0.07) benign(0.001) TCGA-UF-A7J9-01 4 70920042 70920042 G A HTN1 Missense_Mutation p.A19T 0.20 deleterious_low_confidence(0.02) probably_damaging(0.913) TCGA-UF-A7J9-01 4 72319325 72319325 C T SLC4A4 Missense_Mutation p.A479V 0.18 deleterious(0.02) benign(0.058) TCGA-UF-A7J9-01 4 79434693 79434693 G C FRAS1 Silent p.L3387L 0.23 TCGA-UF-A7J9-01 5 121356179 121356179 G C SRFBP1 Missense_Mutation p.G250A 0.32 tolerated(0.16) benign(0.05) TCGA-UF-A7J9-01 5 126250792 126250792 G - MARCH3 Frame_Shift_Del p.H75Tfs*55 0.26 TCGA-UF-A7J9-01 5 140167021 140167021 C T PCDHA1 Silent p.N382N 0.35 TCGA-UF-A7J9-01 5 140732209 140732209 C A PCDHGB1 Silent p.I794I 0.50 TCGA-UF-A7J9-01 5 143853480 143853480 G A KCTD16 Missense_Mutation p.D364N 0.34 deleterious(0.04) possibly_damaging(0.829) TCGA-UF-A7J9-01 5 45267355 45267355 T A HCN1 Missense_Mutation p.E540V 0.10 deleterious(0.01) probably_damaging(1) TCGA-UF-A7J9-01 5 66492458 66492458 G A CD180 Silent p.D4D 0.07 TCGA-UF-A7J9-01 6 101307046 101307046 C T ASCC3 Intron 0.27 TCGA-UF-A7J9-01 6 111696917 111696917 T C REV3L Missense_Mutation p.T881A 0.12 tolerated(0.73) benign(0.001) TCGA-UF-A7J9-01 6 112471791 112471791 C T LAMA4 Missense_Mutation p.G699S 0.13 tolerated(0.59) benign(0.004) TCGA-UF-A7J9-01 6 136599312 136599312 G A BCLAF1 Missense_Mutation p.P236L 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-UF-A7J9-01 6 144033316 144033316 G A PHACTR2 Silent p.S70S 0.27 TCGA-UF-A7J9-01 6 151687228 151687228 C G ZBTB2 Missense_Mutation p.D325H 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-UF-A7J9-01 6 159650855 159650855 C G FNDC1 Missense_Mutation p.L397V 0.10 deleterious(0.04) unknown(0) TCGA-UF-A7J9-01 6 161159610 161159610 G C PLG Missense_Mutation p.E615Q 0.18 tolerated(1) benign(0.008) TCGA-UF-A7J9-01 6 170033070 170033070 C T WDR27 Silent p.R732R 0.10 TCGA-UF-A7J9-01 6 22569771 22569771 C A HDGFL1 5'Flank 0.36 TCGA-UF-A7J9-01 6 27368981 27368981 G A ZNF391 Missense_Mutation p.E278K 0.18 tolerated(0.52) benign(0.396) TCGA-UF-A7J9-01 6 30521326 30521326 A G GNL1 Silent p.N203N 0.08 TCGA-UF-A7J9-01 6 31922531 31922531 G A NELFE Silent p.S181S 0.23 TCGA-UF-A7J9-01 6 42225914 42225914 C A TRERF1 Silent p.T765T 0.09 TCGA-UF-A7J9-01 6 47544293 47544295 CAG - CD2AP In_Frame_Del p.Q255del 0.13 TCGA-UF-A7J9-01 6 56479213 56479213 T C DST Missense_Mutation p.I1130V 0.28 benign(0.002) TCGA-UF-A7J9-01 6 76728458 76728458 G C IMPG1 Missense_Mutation p.L262V 0.06 tolerated(0.14) benign(0.198) TCGA-UF-A7J9-01 6 8102739 8102739 C G EEF1E1 Missense_Mutation p.E6Q 0.09 deleterious(0.01) unknown(0) TCGA-UF-A7J9-01 6 90605716 90605716 T C GJA10 Missense_Mutation p.V510A 0.08 tolerated_low_confidence(0.17) benign(0) TCGA-UF-A7J9-01 6 94120867 94120867 C G EPHA7 Missense_Mutation p.D62H 0.11 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 7 100676291 100676291 T C MUC17 Missense_Mutation p.S532P 0.23 probably_damaging(0.931) TCGA-UF-A7J9-01 7 100676292 100676292 C A MUC17 Nonsense_Mutation p.S532* 0.23 TCGA-UF-A7J9-01 7 103191677 103191677 A T RELN Missense_Mutation p.F2047I 0.06 tolerated(0.37) benign(0.017) TCGA-UF-A7J9-01 7 121960383 121960383 T G CADPS2 Silent p.R1243R 0.25 TCGA-UF-A7J9-01 7 128441260 128441260 G T CCDC136 Nonsense_Mutation p.E123* 0.37 TCGA-UF-A7J9-01 7 141795424 141795424 G C MGAM Missense_Mutation p.Q1610H 0.25 tolerated(0.2) benign(0.019) TCGA-UF-A7J9-01 7 144096925 144096925 C T NOBOX Missense_Mutation p.R360Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-UF-A7J9-01 7 144463007 144463007 A T TPK1 Silent p.P27P 0.20 TCGA-UF-A7J9-01 7 150027717 150027717 C G ZBED6CL Missense_Mutation p.T75S 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-UF-A7J9-01 7 151860056 151860056 G A KMT2C Missense_Mutation p.H3536Y 0.11 possibly_damaging(0.493) TCGA-UF-A7J9-01 7 154379500 154379500 C G DPP6 Intron 0.28 TCGA-UF-A7J9-01 7 19748631 19748631 T A TWISTNB Silent p.A3A 0.21 TCGA-UF-A7J9-01 7 48312992 48312992 T G ABCA13 Silent p.V1243V 0.34 TCGA-UF-A7J9-01 7 53103832 53103832 G A POM121L12 Silent p.Q156Q 0.15 TCGA-UF-A7J9-01 7 6080816 6080816 T A EIF2AK1 Missense_Mutation p.S276C 0.21 deleterious(0.03) possibly_damaging(0.873) TCGA-UF-A7J9-01 7 63726351 63726351 A C ZNF679 Silent p.R114R 0.19 TCGA-UF-A7J9-01 7 81746389 81746389 A G CACNA2D1 Missense_Mutation p.V166A 0.15 deleterious(0) probably_damaging(0.998) TCGA-UF-A7J9-01 7 82763692 82763692 G A PCLO Silent p.T1058T 0.15 TCGA-UF-A7J9-01 7 87079403 87079403 G A ABCB4 Silent p.L238L 0.22 TCGA-UF-A7J9-01 7 88964416 88964416 G A ZNF804B Missense_Mutation p.R707K 0.27 tolerated(0.95) benign(0.002) TCGA-UF-A7J9-01 7 97766644 97766644 G T LMTK2 Missense_Mutation p.A41S 0.07 tolerated(0.19) benign(0.41) TCGA-UF-A7J9-01 8 139144711 139144711 C A FAM135B 3'UTR 0.29 TCGA-UF-A7J9-01 8 144378415 144378415 C T ZNF696 Silent p.F190F 0.33 TCGA-UF-A7J9-01 8 144886317 144886317 G C SCRIB Missense_Mutation p.L1007V 0.14 probably_damaging(0.95) TCGA-UF-A7J9-01 8 145772651 145772651 C T ARHGAP39 Missense_Mutation p.E607K 0.29 tolerated(0.17) probably_damaging(0.999) TCGA-UF-A7J9-01 8 22037292 22037292 G A BMP1 Missense_Mutation p.R304Q 0.44 tolerated(0.15) benign(0.067) TCGA-UF-A7J9-01 8 26481755 26481755 T A DPYSL2 Missense_Mutation p.L137Q 0.23 deleterious(0) probably_damaging(0.992) TCGA-UF-A7J9-01 8 28573738 28573738 G T EXTL3 Silent p.L54L 0.07 TCGA-UF-A7J9-01 8 70514020 70514020 T G SULF1 Silent p.R339R 0.21 TCGA-UF-A7J9-01 8 70980726 70980726 G A PRDM14 Nonsense_Mutation p.Q248* 0.23 TCGA-UF-A7J9-01 8 85097210 85097210 C T RALYL 5'UTR 0.22 TCGA-UF-A7J9-01 8 86240821 86240821 G A CA1 Silent p.L252L 0.23 TCGA-UF-A7J9-01 8 89180150 89180150 G A MMP16 Missense_Mutation p.R153C 0.15 deleterious(0) probably_damaging(0.991) TCGA-UF-A7J9-01 9 115598518 115598518 G A SNX30 Missense_Mutation p.G215R 0.50 tolerated(0.07) benign(0.412) TCGA-UF-A7J9-01 9 117093137 117093137 G C ORM2 Missense_Mutation p.R108T 0.05 tolerated(0.06) benign(0.091) TCGA-UF-A7J9-01 9 119115159 119115159 G C PAPPA Missense_Mutation p.G1380A 0.61 deleterious(0.04) probably_damaging(0.939) TCGA-UF-A7J9-01 9 139266536 139266536 C G CARD9 5'UTR 0.50 TCGA-UF-A7J9-01 9 140002088 140002088 C T MAN1B1 Silent p.L624L 0.49 TCGA-UF-A7J9-01 9 140356440 140356440 G T PNPLA7 Silent p.G1233G 0.29 TCGA-UF-A7J9-01 9 21971006 21971006 C T CDKN2A Missense_Mutation p.A118T 0.38 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 9 21971008 21971008 A - CDKN2A Frame_Shift_Del p.L117Rfs*29 0.35 TCGA-UF-A7J9-01 9 72073070 72073070 A C APBA1 Splice_Site p.X505_splice 0.50 TCGA-UF-A7J9-01 X 101096680 101096680 A G NXF5 Missense_Mutation p.V69A 0.05 tolerated(0.07) possibly_damaging(0.796) TCGA-UF-A7J9-01 X 101623491 101623491 G A NXF2B Nonsense_Mutation p.Q229* 0.18 TCGA-UF-A7J9-01 X 122528858 122528858 G A GRIA3 Missense_Mutation p.G264R 0.49 deleterious(0) probably_damaging(1) TCGA-UF-A7J9-01 X 133700082 133700082 A T PLAC1 Missense_Mutation p.S211T 0.38 tolerated(0.56) benign(0.154) TCGA-UF-A7J9-01 X 148571967 148571967 T C IDS Missense_Mutation p.K84R 0.60 tolerated(0.72) benign(0.013) TCGA-UF-A7J9-01 X 150349599 150349599 C T GPR50 Missense_Mutation p.P515L 0.47 tolerated_low_confidence(0.62) benign(0.005) TCGA-UF-A7J9-01 X 153760789 153760789 C G G6PD Missense_Mutation p.R457T 0.50 deleterious(0) probably_damaging(0.931) TCGA-UF-A7J9-01 X 50378316 50378316 G C SHROOM4 Missense_Mutation p.Q253E 0.50 tolerated(0.15) benign(0.006) TCGA-UF-A7J9-01 X 53641650 53641650 T C HUWE1 Silent p.P702P 0.60 TCGA-UF-A7J9-01 X 55033053 55033053 C T APEX2 Missense_Mutation p.R248C 0.53 deleterious(0) probably_damaging(0.999) TCGA-UF-A7J9-01 X 57337083 57337083 G T FAAH2 Missense_Mutation p.Q111H 0.45 tolerated(0.15) benign(0.008) TCGA-UF-A7J9-01 X 57337084 57337084 G T FAAH2 Nonsense_Mutation p.E112* 0.46 TCGA-UF-A7J9-01 X 65413476 65413476 C A HEPH Silent p.I509I 0.59 TCGA-UF-A7J9-01 X 77365394 77365394 C G PGK1 Missense_Mutation p.N32K 0.08 tolerated(0.27) benign(0.002) TCGA-UF-A7J9-01 X 92964537 92964537 C T FAM133A Missense_Mutation p.T40I 0.52 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-UF-A7JA-01 10 103587992 103587992 C G KCNIP2 Silent p.V186V 0.13 TCGA-UF-A7JA-01 10 105143116 105143116 T A TAF5 Missense_Mutation p.S552R 0.10 deleterious(0) probably_damaging(0.965) TCGA-UF-A7JA-01 10 106976771 106976771 C G SORCS3 Missense_Mutation p.I875M 0.09 tolerated(0.16) benign(0.167) TCGA-UF-A7JA-01 10 115349331 115349331 C A HABP2 3'UTR 0.17 TCGA-UF-A7JA-01 10 127569194 127569194 T C DHX32 Missense_Mutation p.E67G 0.10 tolerated(0.34) benign(0.101) TCGA-UF-A7JA-01 10 128973746 128973746 A T FAM196A Missense_Mutation p.L305Q 0.08 tolerated(0.66) benign(0.019) TCGA-UF-A7JA-01 10 134751107 134751107 C T TTC40 Silent p.P203P 0.12 TCGA-UF-A7JA-01 10 135020263 135020263 G T KNDC1 Missense_Mutation p.Q1154H 0.09 deleterious(0.05) benign(0.094) TCGA-UF-A7JA-01 10 22653828 22653828 A T SPAG6 Silent p.T56T 0.11 TCGA-UF-A7JA-01 10 26513478 26513478 G A GAD2 Missense_Mutation p.E208K 0.07 deleterious(0) benign(0.056) TCGA-UF-A7JA-01 10 37508303 37508303 T C ANKRD30A Silent p.P1165P 0.09 TCGA-UF-A7JA-01 10 73569667 73569667 C A CDH23 Missense_Mutation p.A698E 0.16 tolerated(0.08) possibly_damaging(0.642) TCGA-UF-A7JA-01 11 123676741 123676741 C G OR6M1 Missense_Mutation p.G106A 0.12 deleterious(0) probably_damaging(0.948) TCGA-UF-A7JA-01 11 128781855 128781855 C T KCNJ5 Silent p.I229I 0.11 TCGA-UF-A7JA-01 11 19261740 19261740 C G E2F8 5'UTR 0.07 TCGA-UF-A7JA-01 11 4843569 4843569 C G OR51F2 Missense_Mutation p.I318M 0.11 deleterious(0.02) benign(0.003) TCGA-UF-A7JA-01 11 55032682 55032682 G T TRIM48 Missense_Mutation p.K117N 0.09 tolerated(0.08) benign(0.023) TCGA-UF-A7JA-01 11 55322163 55322163 A T OR4C15 Silent p.S127S 0.18 TCGA-UF-A7JA-01 11 55873274 55873274 T C OR8H2 Silent p.Y252Y 0.07 TCGA-UF-A7JA-01 11 56309881 56309881 T C OR5M11 Missense_Mutation p.N285D 0.16 deleterious(0) benign(0.048) TCGA-UF-A7JA-01 11 58978300 58978300 C T MPEG1 Missense_Mutation p.R680Q 0.06 tolerated(0.09) benign(0.046) TCGA-UF-A7JA-01 11 64973960 64973960 G C CAPN1 Missense_Mutation p.L460F 0.06 deleterious(0.01) probably_damaging(0.909) TCGA-UF-A7JA-01 11 66366595 66366595 G C CCS Missense_Mutation p.D41H 0.07 tolerated(0.14) benign(0.013) TCGA-UF-A7JA-01 11 7064653 7064653 A T NLRP14 Missense_Mutation p.I466F 0.14 tolerated(0.16) benign(0.001) TCGA-UF-A7JA-01 11 95546634 95546634 C A CEP57 Missense_Mutation p.L129M 0.29 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 12 117962953 117962953 C T KSR2 Silent p.S641S 0.17 TCGA-UF-A7JA-01 12 120599312 120599312 G A GCN1L1 Silent p.I806I 0.13 TCGA-UF-A7JA-01 12 40745477 40745477 A C LRRK2 Missense_Mutation p.H2173P 0.07 tolerated(0.23) benign(0.001) TCGA-UF-A7JA-01 12 41966190 41966190 G T PDZRN4 Missense_Mutation p.G537C 0.16 deleterious(0) probably_damaging(1) TCGA-UF-A7JA-01 12 44238448 44238448 C T TMEM117 5'UTR 0.11 TCGA-UF-A7JA-01 12 49399267 49399267 A G PRKAG1 Silent p.D76D 0.12 TCGA-UF-A7JA-01 12 50503379 50503379 G A GPD1 3'UTR 0.10 TCGA-UF-A7JA-01 12 55714857 55714857 C G OR6C1 Silent p.L158L 0.14 TCGA-UF-A7JA-01 12 56571873 56571873 G C SMARCC2 Missense_Mutation p.H439D 0.10 deleterious(0) possibly_damaging(0.537) TCGA-UF-A7JA-01 12 63991675 63991675 G C DPY19L2 Missense_Mutation p.L459V 0.09 deleterious(0) possibly_damaging(0.896) TCGA-UF-A7JA-01 12 9309893 9309893 T C PZP Missense_Mutation p.E1143G 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-UF-A7JA-01 13 26788500 26788500 G A RNF6 Nonsense_Mutation p.Q507* 0.05 TCGA-UF-A7JA-01 13 26793680 26793680 C G RNF6 Missense_Mutation p.R36T 0.14 deleterious(0) probably_damaging(0.995) TCGA-UF-A7JA-01 13 32906550 32906550 T G BRCA2 Missense_Mutation p.F312C 0.33 deleterious(0.01) possibly_damaging(0.893) TCGA-UF-A7JA-01 13 39425231 39425231 G C FREM2 Missense_Mutation p.R2243P 0.10 deleterious(0.03) benign(0.233) TCGA-UF-A7JA-01 14 102552130 102552130 G A HSP90AA1 Missense_Mutation p.S287L 0.13 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-UF-A7JA-01 14 106091009 106091009 C G IGHG4 Missense_Mutation p.S263T 0.13 tolerated(0.43) benign(0.22) TCGA-UF-A7JA-01 14 50085454 50085454 A G RPL36AL 3'UTR 0.13 TCGA-UF-A7JA-01 14 53525264 53525264 A T DDHD1 Missense_Mutation p.S641R 0.18 tolerated(0.09) benign(0.374) TCGA-UF-A7JA-01 14 57960409 57960409 G A C14orf105 Missense_Mutation p.H9Y 0.10 tolerated(0.05) possibly_damaging(0.751) TCGA-UF-A7JA-01 14 64682003 64682003 G A SYNE2 Splice_Site p.X6445_splice 0.16 TCGA-UF-A7JA-01 14 74762564 74762564 C T ABCD4 Missense_Mutation p.D221N 0.09 tolerated(0.19) possibly_damaging(0.823) TCGA-UF-A7JA-01 14 74766887 74766887 C G ABCD4 Missense_Mutation p.L41F 0.06 tolerated(0.06) possibly_damaging(0.6) TCGA-UF-A7JA-01 14 88478152 88478152 C T GPR65 Missense_Mutation p.R321C 0.15 tolerated(0.06) benign(0.001) TCGA-UF-A7JA-01 15 23003059 23003059 G A CYFIP1 3'UTR 0.14 TCGA-UF-A7JA-01 15 25514954 25514954 G A SNORD115-48 RNA 0.14 TCGA-UF-A7JA-01 15 27193200 27193200 C G GABRA5 Silent p.V403V 0.13 TCGA-UF-A7JA-01 15 41641367 41641367 G A NUSAP1 Silent p.E78E 0.13 TCGA-UF-A7JA-01 15 42005443 42005443 G A MGA Missense_Mutation p.S1060N 0.10 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 15 42851582 42851582 G A HAUS2 Missense_Mutation p.D78N 0.14 deleterious(0) probably_damaging(1) TCGA-UF-A7JA-01 15 51806687 51806687 C T DMXL2 Missense_Mutation p.E866K 0.11 tolerated(0.36) benign(0.011) TCGA-UF-A7JA-01 15 51828991 51828991 G A DMXL2 Silent p.I562I 0.17 TCGA-UF-A7JA-01 15 65456381 65456381 G C CLPX Nonsense_Mutation p.S220* 0.10 TCGA-UF-A7JA-01 16 11071202 11071202 G A CLEC16A Silent p.L283L 0.07 TCGA-UF-A7JA-01 16 15204613 15204613 C G RP11-1186N24.5 RNA 0.10 TCGA-UF-A7JA-01 16 23113727 23113727 C A USP31 Missense_Mutation p.D383Y 0.20 deleterious(0) probably_damaging(1) TCGA-UF-A7JA-01 16 30389949 30389949 G A SEPT1 Silent p.I338I 0.08 TCGA-UF-A7JA-01 16 3789616 3789616 G A CREBBP Nonsense_Mutation p.Q1415* 0.09 TCGA-UF-A7JA-01 16 49430357 49430357 G C C16orf78 Missense_Mutation p.D140H 0.06 deleterious(0) benign(0.242) TCGA-UF-A7JA-01 16 68328673 68328673 G A SLC7A6 Missense_Mutation p.R363H 0.08 tolerated(0.12) benign(0.344) TCGA-UF-A7JA-01 16 71710535 71710535 G A PHLPP2 Missense_Mutation p.T429I 0.17 tolerated(0.35) benign(0.192) TCGA-UF-A7JA-01 16 72993579 72993579 C T ZFHX3 Missense_Mutation p.A156T 0.12 benign(0.238) TCGA-UF-A7JA-01 17 10364348 10364348 G T MYH4 Missense_Mutation p.F344L 0.14 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 17 16843026 16843026 C T TNFRSF13B Silent p.A239A 0.18 TCGA-UF-A7JA-01 17 30179992 30179992 G A COPRS Missense_Mutation p.S75F 0.08 tolerated(0.46) benign(0.022) TCGA-UF-A7JA-01 17 3119566 3119566 A G OR1A1 Missense_Mutation p.I218V 0.13 tolerated(0.77) benign(0.002) TCGA-UF-A7JA-01 17 33768044 33768044 T A SLFN13 Missense_Mutation p.N755I 0.12 deleterious(0.02) benign(0.133) TCGA-UF-A7JA-01 17 37187894 37187894 T C CTD-2206N4.2 5'Flank 0.09 TCGA-UF-A7JA-01 17 45451889 45451889 C G EFCAB13 Nonsense_Mutation p.S310* 0.09 TCGA-UF-A7JA-01 17 47076494 47076494 C T IGF2BP1 Missense_Mutation p.R67C 0.12 tolerated(0.09) possibly_damaging(0.717) TCGA-UF-A7JA-01 17 48827910 48827910 G A LUC7L3 Missense_Mutation p.R396Q 0.06 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-UF-A7JA-01 17 65909123 65909123 A G BPTF Missense_Mutation p.Y1708C 0.17 probably_damaging(1) TCGA-UF-A7JA-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.18 tolerated(0.11) benign(0.308) TCGA-UF-A7JA-01 17 7579485 7579485 C A TP53 Nonsense_Mutation p.E68* 0.13 TCGA-UF-A7JA-01 18 13731920 13731920 C T RNMT Missense_Mutation p.P135L 0.09 deleterious(0.04) benign(0.101) TCGA-UF-A7JA-01 18 14105045 14105045 G A ZNF519 Silent p.T498T 0.07 TCGA-UF-A7JA-01 18 21660589 21660589 G A TTC39C Silent p.K167K 0.11 TCGA-UF-A7JA-01 18 2587842 2587842 A G NDC80 Missense_Mutation p.Y228C 0.21 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 18 65179834 65179834 A C DSEL Missense_Mutation p.M681R 0.29 deleterious(0) possibly_damaging(0.452) TCGA-UF-A7JA-01 18 65181440 65181440 G T DSEL Missense_Mutation p.P146T 0.20 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 18 67727260 67727260 G T RTTN Nonsense_Mutation p.S1589* 0.08 TCGA-UF-A7JA-01 18 71749185 71749185 C T FBXO15 Missense_Mutation p.D414N 0.12 tolerated(0.46) benign(0.003) TCGA-UF-A7JA-01 19 11353808 11353808 G A DOCK6 Silent p.D469D 0.13 TCGA-UF-A7JA-01 19 14991960 14991960 C G OR7A17 Missense_Mutation p.D70H 0.08 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-UF-A7JA-01 19 15514430 15514430 C T AKAP8L Missense_Mutation p.S73N 0.13 tolerated(0.69) benign(0.004) TCGA-UF-A7JA-01 19 18256580 18256580 G C MAST3 Missense_Mutation p.E994Q 0.14 tolerated(0.19) benign(0.025) TCGA-UF-A7JA-01 19 18965503 18965503 C T UPF1 Missense_Mutation p.S417L 0.07 deleterious(0) possibly_damaging(0.594) TCGA-UF-A7JA-01 19 24309791 24309791 C T ZNF254 Missense_Mutation p.A330V 0.11 tolerated(0.06) possibly_damaging(0.573) TCGA-UF-A7JA-01 19 35801000 35801000 C T MAG Silent p.R485R 0.22 TCGA-UF-A7JA-01 19 37211198 37211198 G C ZNF567 Missense_Mutation p.Q493H 0.17 tolerated(0.05) probably_damaging(0.997) TCGA-UF-A7JA-01 19 41292772 41292772 G A RAB4B Silent p.R182R 0.10 TCGA-UF-A7JA-01 19 41759572 41759572 C G AXL Silent p.T665T 0.07 TCGA-UF-A7JA-01 19 44680026 44680026 A G ZNF226 Missense_Mutation p.D204G 0.10 tolerated(0.06) benign(0.086) TCGA-UF-A7JA-01 19 45920135 45920135 G C ERCC1 Silent p.L182L 0.21 TCGA-UF-A7JA-01 19 46094344 46094344 C G GPR4 Missense_Mutation p.E261Q 0.05 tolerated(0.43) probably_damaging(0.988) TCGA-UF-A7JA-01 19 52394092 52394092 C T ZNF649 Missense_Mutation p.D433N 0.15 tolerated(0.53) benign(0.002) TCGA-UF-A7JA-01 19 53344884 53344884 G A ZNF468 Silent p.F221F 0.21 TCGA-UF-A7JA-01 19 53912379 53912379 A T ZNF765 Nonstop_Mutation p.*524Lext*1 0.09 TCGA-UF-A7JA-01 19 53994186 53994186 C G ZNF813 Missense_Mutation p.Q234E 0.08 deleterious(0.04) benign(0.172) TCGA-UF-A7JA-01 19 54803281 54803281 G A LILRA3 Silent p.S132S 0.15 TCGA-UF-A7JA-01 19 58189695 58189695 A G ZSCAN4 Missense_Mutation p.N242D 0.17 tolerated(0.46) benign(0.037) TCGA-UF-A7JA-01 19 58238970 58238970 G C ZNF671 5'UTR 0.13 TCGA-UF-A7JA-01 1 111060290 111060290 C T KCNA10 Missense_Mutation p.E374K 0.08 deleterious(0) probably_damaging(1) TCGA-UF-A7JA-01 1 117509829 117509829 C G PTGFRN Missense_Mutation p.Q646E 0.06 deleterious(0) probably_damaging(0.994) TCGA-UF-A7JA-01 1 117660854 117660854 C G TRIM45 Missense_Mutation p.E342Q 0.15 deleterious(0) probably_damaging(0.962) TCGA-UF-A7JA-01 1 117661121 117661121 C T TRIM45 Missense_Mutation p.E253K 0.13 tolerated(0.14) benign(0.025) TCGA-UF-A7JA-01 1 12337170 12337170 A T VPS13D Missense_Mutation p.L1175F 0.21 benign(0.319) TCGA-UF-A7JA-01 1 144879044 144879044 G A PDE4DIP Missense_Mutation p.S1469L 0.04 deleterious(0) benign(0.396) TCGA-UF-A7JA-01 1 159272207 159272207 T C FCER1A Missense_Mutation p.F18S 0.08 deleterious(0.04) benign(0.079) TCGA-UF-A7JA-01 1 160604531 160604531 G T SLAMF1 Missense_Mutation p.S191Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 1 161726805 161726805 A G DUSP12 3'UTR 0.29 TCGA-UF-A7JA-01 1 166888585 166888585 G C ILDR2 3'UTR 0.09 TCGA-UF-A7JA-01 1 186302476 186302476 T C TPR Missense_Mutation p.S1745G 0.23 benign(0.153) TCGA-UF-A7JA-01 1 196748421 196748421 C T CFHR3 Missense_Mutation p.S63L 0.06 deleterious(0.05) probably_damaging(0.983) TCGA-UF-A7JA-01 1 210856679 210856679 C G KCNH1 Missense_Mutation p.E972Q 0.09 tolerated_low_confidence(0.15) benign(0.006) TCGA-UF-A7JA-01 1 238090406 238090406 G C RP11-193H5.1 RNA 0.12 TCGA-UF-A7JA-01 1 238090596 238090596 G A RP11-193H5.1 RNA 0.14 TCGA-UF-A7JA-01 1 33549534 33549534 C T ADC Intron 0.09 TCGA-UF-A7JA-01 1 39854292 39854292 G A MACF1 Missense_Mutation p.E3198K 0.07 probably_damaging(0.999) TCGA-UF-A7JA-01 1 89729475 89729475 G A GBP5 Nonsense_Mutation p.Q436* 0.12 TCGA-UF-A7JA-01 1 89729504 89729504 G C GBP5 Missense_Mutation p.S426C 0.09 tolerated(0.06) benign(0.064) TCGA-UF-A7JA-01 20 16359523 16359523 C T KIF16B Missense_Mutation p.G1042S 0.04 tolerated_low_confidence(1) benign(0.004) TCGA-UF-A7JA-01 20 21367541 21367541 G A XRN2 Missense_Mutation p.R895Q 0.19 tolerated_low_confidence(0.11) benign(0.012) TCGA-UF-A7JA-01 20 2315829 2315829 C G TGM3 Missense_Mutation p.I570M 0.10 deleterious(0) probably_damaging(0.979) TCGA-UF-A7JA-01 20 37580732 37580732 C G FAM83D Missense_Mutation p.Q473E 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-UF-A7JA-01 20 42164481 42164481 C T L3MBTL1 Silent p.P588P 0.06 TCGA-UF-A7JA-01 20 47602086 47602086 G A ARFGEF2 Missense_Mutation p.E738K 0.07 deleterious(0.01) probably_damaging(0.988) TCGA-UF-A7JA-01 20 52612612 52612612 A T BCAS1 Intron 0.42 TCGA-UF-A7JA-01 20 58467456 58467456 A G SYCP2 Silent p.T651T 0.18 TCGA-UF-A7JA-01 20 58559753 58559753 C G CDH26 Missense_Mutation p.Q201E 0.07 tolerated(0.12) benign(0.058) TCGA-UF-A7JA-01 20 60904830 60904830 C G LAMA5 Intron 0.08 TCGA-UF-A7JA-01 21 41143078 41143078 C A IGSF5 Silent p.T218T 0.20 TCGA-UF-A7JA-01 21 41496213 41496213 G C DSCAM Missense_Mutation p.A1202G 0.12 tolerated(0.07) benign(0.02) TCGA-UF-A7JA-01 22 24567822 24567822 C T CABIN1 Missense_Mutation p.R1967C 0.11 deleterious_low_confidence(0) benign(0.001) TCGA-UF-A7JA-01 22 50479651 50479651 T C TTLL8 Intron 0.24 TCGA-UF-A7JA-01 2 109099602 109099602 G C GCC2 Missense_Mutation p.E1144Q 0.26 deleterious(0) possibly_damaging(0.478) TCGA-UF-A7JA-01 2 116572398 116572398 C A DPP10 Missense_Mutation p.T581K 0.07 deleterious(0.01) benign(0.055) TCGA-UF-A7JA-01 2 153475432 153475432 C G FMNL2 Missense_Mutation p.Q463E 0.11 benign(0.113) TCGA-UF-A7JA-01 2 170068605 170068605 G C LRP2 Silent p.L2051L 0.08 TCGA-UF-A7JA-01 2 172187154 172187154 C T METTL8 Missense_Mutation p.D259N 0.06 tolerated(0.15) probably_damaging(0.967) TCGA-UF-A7JA-01 2 179510677 179510677 C A TTN Missense_Mutation p.D13460Y 0.27 TCGA-UF-A7JA-01 2 179588290 179588290 T C TTN Silent p.K7179K 0.27 TCGA-UF-A7JA-01 2 180036954 180036954 C A SESTD1 Missense_Mutation p.V88F 0.07 deleterious(0.02) benign(0.025) TCGA-UF-A7JA-01 2 188332602 188332602 T C TFPI Missense_Mutation p.N229S 0.12 tolerated(0.31) benign(0.186) TCGA-UF-A7JA-01 2 201531426 201531426 T A AOX1 Missense_Mutation p.I1187N 0.12 deleterious(0) probably_damaging(0.987) TCGA-UF-A7JA-01 2 216288965 216288965 A T FN1 Missense_Mutation p.C374S 0.06 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JA-01 2 217279767 217279767 C T SMARCAL1 Missense_Mutation p.R114C 0.09 tolerated_low_confidence(0.05) benign(0.005) TCGA-UF-A7JA-01 2 228120747 228120747 A T COL4A3 Missense_Mutation p.K298N 0.11 probably_damaging(0.994) TCGA-UF-A7JA-01 2 242617876 242617876 C T DTYMK Silent p.L173L 0.11 TCGA-UF-A7JA-01 2 33952349 33952349 C T AC009499.1 Intron 0.23 TCGA-UF-A7JA-01 3 108635040 108635040 G T GUCA1C Missense_Mutation p.Q126K 0.08 tolerated(0.5) possibly_damaging(0.809) TCGA-UF-A7JA-01 3 130409457 130409457 G A PIK3R4 Missense_Mutation p.T1047M 0.11 deleterious(0.04) possibly_damaging(0.871) TCGA-UF-A7JA-01 3 135801125 135801125 G A PPP2R3A Missense_Mutation p.E884K 0.04 deleterious(0.03) probably_damaging(0.995) TCGA-UF-A7JA-01 3 135801131 135801131 G A PPP2R3A Missense_Mutation p.E886K 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-UF-A7JA-01 3 135801152 135801152 G A PPP2R3A Missense_Mutation p.D893N 0.04 tolerated(0.05) probably_damaging(0.996) TCGA-UF-A7JA-01 3 135801206 135801206 G C PPP2R3A Missense_Mutation p.D911H 0.06 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 3 135801212 135801212 G A PPP2R3A Missense_Mutation p.D913N 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-UF-A7JA-01 3 1424759 1424759 G C CNTN6 Missense_Mutation p.S767T 0.15 tolerated(0.21) benign(0.201) TCGA-UF-A7JA-01 3 155199085 155199085 C G PLCH1 Missense_Mutation p.R1585T 0.09 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 3 156175302 156175302 G A KCNAB1 Missense_Mutation p.E140K 0.08 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JA-01 3 164908111 164908111 G A SLITRK3 Missense_Mutation p.R170W 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-UF-A7JA-01 3 169540093 169540093 C T LRRIQ4 Silent p.T128T 0.09 TCGA-UF-A7JA-01 3 169569448 169569448 A C LRRC31 Missense_Mutation p.I373S 0.10 deleterious(0) possibly_damaging(0.623) TCGA-UF-A7JA-01 3 175473145 175473145 G T NAALADL2 Missense_Mutation p.D710Y 0.08 deleterious(0) probably_damaging(0.974) TCGA-UF-A7JA-01 3 178968832 178968832 C T KCNMB3 Silent p.T20T 0.07 TCGA-UF-A7JA-01 3 36897743 36897743 T A TRANK1 Missense_Mutation p.E1113V 0.12 tolerated(0.06) benign(0.185) TCGA-UF-A7JA-01 3 37090050 37090050 G C MLH1 Missense_Mutation p.V647L 0.13 tolerated(0.24) benign(0.002) TCGA-UF-A7JA-01 3 37366600 37366600 G A GOLGA4 Missense_Mutation p.E1097K 0.11 possibly_damaging(0.72) TCGA-UF-A7JA-01 3 44764039 44764039 G A ZNF502 3'UTR 0.15 TCGA-UF-A7JA-01 3 93646165 93646165 C A PROS1 Nonsense_Mutation p.E55* 0.09 TCGA-UF-A7JA-01 3 95374461 95374461 G T MTHFD2P1 RNA 0.12 TCGA-UF-A7JA-01 3 97167436 97167436 T A EPHA6 Missense_Mutation p.S586T 0.07 tolerated(1) probably_damaging(0.996) TCGA-UF-A7JA-01 3 97868948 97868948 C A OR5H14 Missense_Mutation p.T240N 0.27 deleterious(0) probably_damaging(1) TCGA-UF-A7JA-01 3 97868949 97868949 C A OR5H14 Silent p.T240T 0.26 TCGA-UF-A7JA-01 4 122085252 122085252 C G TNIP3 Missense_Mutation p.R87T 0.07 tolerated(0.27) possibly_damaging(0.787) TCGA-UF-A7JA-01 4 122251588 122251588 A C QRFPR Missense_Mutation p.I296M 0.23 tolerated(0.38) benign(0.01) TCGA-UF-A7JA-01 4 125592193 125592193 C G ANKRD50 Missense_Mutation p.D747H 0.14 deleterious(0.03) possibly_damaging(0.838) TCGA-UF-A7JA-01 4 129867234 129867234 G C SCLT1 Nonsense_Mutation p.S456* 0.14 TCGA-UF-A7JA-01 4 1369264 1369264 C G UVSSA Silent p.L467L 0.08 TCGA-UF-A7JA-01 4 40351154 40351154 C T CHRNA9 Silent p.G207G 0.11 TCGA-UF-A7JA-01 4 44177257 44177257 C T KCTD8 Silent p.Q324Q 0.08 TCGA-UF-A7JA-01 4 5868411 5868411 C T CRMP1 Missense_Mutation p.E152K 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-UF-A7JA-01 4 88766519 88766519 G A MEPE Missense_Mutation p.E167K 0.14 tolerated(0.22) possibly_damaging(0.673) TCGA-UF-A7JA-01 4 90034627 90034627 C G TIGD2 Missense_Mutation p.L168V 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-UF-A7JA-01 5 112103071 112103071 G A APC Missense_Mutation p.E136K 0.12 probably_damaging(0.989) TCGA-UF-A7JA-01 5 125939445 125939445 C G PHAX Missense_Mutation p.P94A 0.09 tolerated(0.15) benign(0.001) TCGA-UF-A7JA-01 5 1264629 1264629 G A TERT Silent p.D911D 0.08 TCGA-UF-A7JA-01 5 131931469 131931469 G T RAD50 Missense_Mutation p.R725L 0.10 deleterious(0.01) benign(0.023) TCGA-UF-A7JA-01 5 13751222 13751222 G A DNAH5 Nonsense_Mutation p.Q3726* 0.09 TCGA-UF-A7JA-01 5 140182668 140182668 G C PCDHA3 Missense_Mutation p.G629A 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-UF-A7JA-01 5 140249438 140249438 C A PCDHA11 Missense_Mutation p.S250R 0.29 tolerated_low_confidence(0.82) benign(0.007) TCGA-UF-A7JA-01 5 140755818 140755818 G A PCDHGA6 Missense_Mutation p.R723H 0.20 tolerated_low_confidence(0.16) benign(0.009) TCGA-UF-A7JA-01 5 147276594 147276594 C G C5orf46 Missense_Mutation p.E76Q 0.19 tolerated(0.08) possibly_damaging(0.607) TCGA-UF-A7JA-01 5 23527470 23527470 G A PRDM9 Missense_Mutation p.R758H 0.16 deleterious(0.01) possibly_damaging(0.648) TCGA-UF-A7JA-01 5 24593382 24593382 T A CDH10 Missense_Mutation p.Q73L 0.11 tolerated(1) probably_damaging(0.965) TCGA-UF-A7JA-01 5 33576576 33576576 A T ADAMTS12 Missense_Mutation p.N1185K 0.22 tolerated(0.76) benign(0.002) TCGA-UF-A7JA-01 5 58652657 58652657 C G PDE4D Intron 0.12 TCGA-UF-A7JA-01 5 79441913 79441913 T C SERINC5 Missense_Mutation p.N413S 0.07 tolerated(1) benign(0.314) TCGA-UF-A7JA-01 6 102503435 102503436 - T GRIK2 Frame_Shift_Ins p.K848Ifs*12 0.11 TCGA-UF-A7JA-01 6 11190781 11190781 T C NEDD9 Missense_Mutation p.M441V 0.22 deleterious(0.01) possibly_damaging(0.904) TCGA-UF-A7JA-01 6 136913455 136913455 A G MAP3K5 Silent p.D1027D 0.10 TCGA-UF-A7JA-01 6 138202346 138202346 G A TNFAIP3 Missense_Mutation p.E755K 0.15 tolerated(0.54) benign(0.254) TCGA-UF-A7JA-01 6 168369850 168369850 C T MLLT4 3'Flank 0.06 TCGA-UF-A7JA-01 6 33255197 33255197 T A WDR46 Missense_Mutation p.I272F 0.25 deleterious(0.01) benign(0.265) TCGA-UF-A7JA-01 6 39284137 39284137 G T KCNK16 Intron 0.20 TCGA-UF-A7JA-01 6 4044245 4044245 G C PRPF4B Missense_Mutation p.E617Q 0.16 tolerated(0.15) unknown(0) TCGA-UF-A7JA-01 6 42980224 42980224 G A MEA1 Missense_Mutation p.S181F 0.03 deleterious(0.01) benign(0.422) TCGA-UF-A7JA-01 6 47649190 47649190 G T GPR111 Nonsense_Mutation p.G299* 0.12 TCGA-UF-A7JA-01 6 70881889 70881889 G C COL19A1 Missense_Mutation p.E868Q 0.12 deleterious(0.01) probably_damaging(1) TCGA-UF-A7JA-01 6 76713618 76713618 C A IMPG1 Silent p.L395L 0.10 TCGA-UF-A7JA-01 6 84234053 84234053 C T PRSS35 Missense_Mutation p.T298M 0.34 deleterious(0) possibly_damaging(0.518) TCGA-UF-A7JA-01 6 86201737 86201737 G C NT5E Missense_Mutation p.R468T 0.10 deleterious(0) probably_damaging(0.994) TCGA-UF-A7JA-01 7 104730610 104730610 C A KMT2E Missense_Mutation p.Q505K 0.05 deleterious(0.02) benign(0.042) TCGA-UF-A7JA-01 7 111977804 111977804 G A ZNF277 Missense_Mutation p.E297K 0.05 tolerated(0.08) possibly_damaging(0.691) TCGA-UF-A7JA-01 7 113518001 113518001 G A PPP1R3A Missense_Mutation p.S1049F 0.07 deleterious(0.05) benign(0.214) TCGA-UF-A7JA-01 7 124404637 124404637 C T GPR37 Missense_Mutation p.E132K 0.11 tolerated_low_confidence(0.53) benign(0.01) TCGA-UF-A7JA-01 7 14188846 14188846 C G DGKB Missense_Mutation p.K775N 0.17 deleterious(0) possibly_damaging(0.811) TCGA-UF-A7JA-01 7 151927091 151927091 T G KMT2C Missense_Mutation p.S965R 0.03 probably_damaging(1) TCGA-UF-A7JA-01 7 63808903 63808903 G A ZNF736 Missense_Mutation p.R221K 0.21 tolerated(0.72) benign(0.049) TCGA-UF-A7JA-01 7 75157033 75157033 C A PMS2P3 RNA 0.44 TCGA-UF-A7JA-01 7 81589082 81589082 C G CACNA2D1 Silent p.G1010G 0.20 TCGA-UF-A7JA-01 7 86468859 86468859 G T GRM3 Missense_Mutation p.A677S 0.12 deleterious(0.03) possibly_damaging(0.642) TCGA-UF-A7JA-01 7 86468860 86468860 C T GRM3 Missense_Mutation p.A677V 0.11 tolerated(1) benign(0.173) TCGA-UF-A7JA-01 7 86537765 86537765 A G KIAA1324L Silent p.Y818Y 0.15 TCGA-UF-A7JA-01 7 87746076 87746076 A C ADAM22 Missense_Mutation p.H185P 0.13 deleterious(0.02) probably_damaging(0.974) TCGA-UF-A7JA-01 7 91651660 91651660 G A AKAP9 Missense_Mutation p.D1316N 0.25 benign(0.006) TCGA-UF-A7JA-01 7 91852190 91852190 G C KRIT1 Missense_Mutation p.L453V 0.10 deleterious(0.01) possibly_damaging(0.888) TCGA-UF-A7JA-01 7 92970836 92970836 C G CCDC132 Missense_Mutation p.S719C 0.09 deleterious(0.05) benign(0.009) TCGA-UF-A7JA-01 7 99693551 99693551 G A MCM7 Missense_Mutation p.R481C 0.10 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JA-01 8 100673707 100673707 C G VPS13B Missense_Mutation p.L2037V 0.10 deleterious(0) possibly_damaging(0.899) TCGA-UF-A7JA-01 8 109482328 109482328 G A EMC2 Missense_Mutation p.E163K 0.08 tolerated(0.1) benign(0.285) TCGA-UF-A7JA-01 8 113988224 113988224 C T CSMD3 Missense_Mutation p.R395Q 0.07 tolerated_low_confidence(0.53) benign(0) TCGA-UF-A7JA-01 8 114326972 114326972 C G CSMD3 Missense_Mutation p.E77Q 0.10 tolerated(0.25) possibly_damaging(0.552) TCGA-UF-A7JA-01 8 124267752 124267752 T C ZHX1 Silent p.E145E 0.17 TCGA-UF-A7JA-01 8 124658219 124658219 G C KLHL38 Silent p.V502V 0.06 TCGA-UF-A7JA-01 8 145065441 145065441 C T GRINA Missense_Mutation p.P17L 0.17 tolerated_low_confidence(0.09) unknown(0) TCGA-UF-A7JA-01 8 51449336 51449336 C G SNTG1 Missense_Mutation p.F216L 0.08 tolerated(0.37) benign(0.001) TCGA-UF-A7JA-01 8 51449368 51449368 G A SNTG1 Missense_Mutation p.R227Q 0.05 deleterious(0) probably_damaging(0.996) TCGA-UF-A7JA-01 8 72935163 72935163 T G TRPA1 Missense_Mutation p.K1113T 0.10 deleterious(0) benign(0.282) TCGA-UF-A7JA-01 8 86037123 86037123 G C LRRCC1 Missense_Mutation p.K407N 0.06 tolerated(0.05) benign(0.439) TCGA-UF-A7JA-01 8 98289592 98289592 G C TSPYL5 Missense_Mutation p.Q161E 0.14 tolerated(0.68) benign(0.104) TCGA-UF-A7JA-01 9 109685854 109685854 G T ZNF462 Missense_Mutation p.D64Y 0.08 possibly_damaging(0.861) TCGA-UF-A7JA-01 9 116357928 116357928 G C RGS3 Missense_Mutation p.E1098D 0.04 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JA-01 9 138742206 138742206 T A CAMSAP1 Missense_Mutation p.T304S 0.05 tolerated(0.27) benign(0.262) TCGA-UF-A7JA-01 9 21166339 21166339 G A IFNA21 Silent p.F91F 0.10 TCGA-UF-A7JA-01 9 71628163 71628163 G A PRKACG Silent p.F282F 0.06 TCGA-UF-A7JA-01 9 79954477 79954477 C T VPS13A Nonsense_Mutation p.Q2142* 0.25 TCGA-UF-A7JA-01 9 82335048 82335048 T C TLE4 Missense_Mutation p.W560R 0.36 deleterious(0) probably_damaging(1) TCGA-UF-A7JA-01 9 91994243 91994243 G T SEMA4D Silent p.A655A 0.21 TCGA-UF-A7JA-01 X 136652341 136652341 T A ZIC3 3'UTR 0.12 TCGA-UF-A7JA-01 X 140996369 140996369 C A MAGEC1 Missense_Mutation p.P1060H 0.12 deleterious(0) unknown(0) TCGA-UF-A7JA-01 X 15682496 15682496 C A TMEM27 Silent p.V27V 0.14 TCGA-UF-A7JA-01 X 17746841 17746841 T G NHS Missense_Mutation p.F1411C 0.11 deleterious(0) probably_damaging(0.967) TCGA-UF-A7JA-01 X 30269420 30269420 C A MAGEB1 Missense_Mutation p.F270L 0.07 deleterious(0.03) probably_damaging(1) TCGA-UF-A7JA-01 X 48417605 48417605 C G TBC1D25 Silent p.V192V 0.16 TCGA-UF-A7JA-01 X 48682632 48682632 A T HDAC6 Silent p.G1169G 0.10 TCGA-UF-A7JA-01 X 52844131 52844131 C A XAGE5 Missense_Mutation p.A65D 0.14 deleterious(0.02) possibly_damaging(0.455) TCGA-UF-A7JA-01 X 7268167 7268167 G C STS Missense_Mutation p.Q539H 0.05 tolerated(0.06) benign(0) TCGA-UF-A7JA-01 X 7890081 7890081 G T PNPLA4 Missense_Mutation p.A80E 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-UF-A7JA-01 X 91134144 91134144 G C PCDH11X Missense_Mutation p.D969H 0.07 deleterious(0.01) probably_damaging(1) TCGA-UF-A7JC-01 10 102676438 102676438 C G FAM178A Missense_Mutation p.S99C 0.35 tolerated(0.09) possibly_damaging(0.792) TCGA-UF-A7JC-01 10 46121831 46121831 T C ZFAND4 Silent p.P480P 0.29 TCGA-UF-A7JC-01 11 114441792 114441792 G T NXPE4 Missense_Mutation p.D501E 0.73 tolerated(0.13) benign(0.2) TCGA-UF-A7JC-01 11 59361581 59361581 T C OSBP Missense_Mutation p.T487A 0.36 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JC-01 11 74053584 74053584 T C PGM2L1 Silent p.K518K 0.62 TCGA-UF-A7JC-01 12 120582451 120582451 T C GCN1L1 Missense_Mutation p.I1782V 0.26 possibly_damaging(0.505) TCGA-UF-A7JC-01 12 132240012 132240012 C T SFSWAP Silent p.G512G 0.20 TCGA-UF-A7JC-01 12 21201743 21201743 A T SLCO1B7 Silent p.A364A 0.37 TCGA-UF-A7JC-01 12 52840964 52840964 C A KRT6B 3'UTR 0.43 TCGA-UF-A7JC-01 12 53202561 53202561 T C KRT4 Missense_Mutation p.D303G 0.22 deleterious(0) probably_damaging(0.948) TCGA-UF-A7JC-01 12 6601546 6601546 C T MRPL51 Missense_Mutation p.R93Q 0.30 deleterious(0.02) probably_damaging(1) TCGA-UF-A7JC-01 13 72049862 72049862 T C DACH1 Missense_Mutation p.T666A 0.31 benign(0.006) TCGA-UF-A7JC-01 14 22038026 22038026 G T OR10G3 Missense_Mutation p.L284I 0.39 deleterious(0) benign(0.048) TCGA-UF-A7JC-01 14 23002505 23002505 C A TRAJ10 Missense_Mutation p.L21I 0.26 unknown(0) TCGA-UF-A7JC-01 14 55647979 55647979 C A DLGAP5 Missense_Mutation p.G178C 0.40 deleterious(0) probably_damaging(0.928) TCGA-UF-A7JC-01 14 58714471 58714471 G A PSMA3 Missense_Mutation p.D9N 0.34 deleterious(0) probably_damaging(0.996) TCGA-UF-A7JC-01 14 94187794 94187811 ACCACTGCGTTGTTCACG - PRIMA1 In_Frame_Del p.D147_V153delinsE 0.36 TCGA-UF-A7JC-01 15 24921051 24921051 C T NPAP1 Missense_Mutation p.R13C 0.62 tolerated_low_confidence(0.08) possibly_damaging(0.835) TCGA-UF-A7JC-01 15 28357065 28357065 G A HERC2 Silent p.Y4783Y 0.35 TCGA-UF-A7JC-01 15 73028230 73028230 G T BBS4 Missense_Mutation p.A391S 0.23 tolerated(0.1) possibly_damaging(0.737) TCGA-UF-A7JC-01 16 67983743 67983743 G A SLC12A4 Missense_Mutation p.L572F 0.23 deleterious(0) probably_damaging(0.962) TCGA-UF-A7JC-01 17 10317327 10317327 C T MYH8 Missense_Mutation p.E347K 0.35 deleterious(0.01) benign(0.347) TCGA-UF-A7JC-01 17 1542221 1542221 C T SCARF1 Splice_Site p.X415_splice 0.43 TCGA-UF-A7JC-01 17 21318755 21318755 G A KCNJ12 Missense_Mutation p.G34D 0.06 deleterious(0.04) probably_damaging(0.948) TCGA-UF-A7JC-01 17 42931928 42931930 GAG - EFTUD2 In_Frame_Del p.S752del 0.35 TCGA-UF-A7JC-01 18 48575159 48575159 C T SMAD4 Missense_Mutation p.A118V 0.67 deleterious(0.04) probably_damaging(0.971) TCGA-UF-A7JC-01 19 13397355 13397355 G - CACNA1A Frame_Shift_Del p.P1172Qfs*14 0.10 TCGA-UF-A7JC-01 19 18333077 18333077 C T PDE4C Missense_Mutation p.S100N 0.09 deleterious_low_confidence(0.02) benign(0.05) TCGA-UF-A7JC-01 19 35435232 35435232 A C ZNF30 Missense_Mutation p.K455N 0.26 deleterious(0.03) probably_damaging(0.993) TCGA-UF-A7JC-01 19 53303097 53303097 T C ZNF28 Silent p.E667E 0.19 TCGA-UF-A7JC-01 19 53303125 53303125 C G ZNF28 Missense_Mutation p.S658T 0.10 tolerated(1) benign(0.017) TCGA-UF-A7JC-01 19 5657267 5657267 G A SAFB Missense_Mutation p.D591N 0.28 deleterious(0) probably_damaging(0.968) TCGA-UF-A7JC-01 19 5657268 5657268 A C SAFB Missense_Mutation p.D591A 0.27 deleterious(0) probably_damaging(0.926) TCGA-UF-A7JC-01 19 5693347 5693349 TCT - LONP1 In_Frame_Del p.K888del 0.36 TCGA-UF-A7JC-01 1 11561648 11561648 G A PTCHD2 Missense_Mutation p.S200N 0.32 tolerated_low_confidence(0.26) benign(0.001) TCGA-UF-A7JC-01 1 11586758 11586758 G A PTCHD2 Missense_Mutation p.M888I 0.40 tolerated_low_confidence(0.18) benign(0.001) TCGA-UF-A7JC-01 1 156024746 156024746 C T LAMTOR2 Silent p.T22T 0.53 TCGA-UF-A7JC-01 1 158596713 158596713 T C SPTA1 Missense_Mutation p.I1917V 0.47 tolerated(0.29) benign(0.04) TCGA-UF-A7JC-01 1 179077240 179077240 C T ABL2 Silent p.S1054S 0.26 TCGA-UF-A7JC-01 1 240637438 240637438 T C FMN2 Missense_Mutation p.I1718T 0.44 possibly_damaging(0.573) TCGA-UF-A7JC-01 1 245847604 245847604 G A KIF26B Silent p.A776A 0.26 TCGA-UF-A7JC-01 1 89427797 89427797 T C CCBL2 Missense_Mutation p.Y162C 0.22 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JC-01 20 29891139 29891139 G T DEFB116 Missense_Mutation p.P62Q 0.31 tolerated(0.44) benign(0.058) TCGA-UF-A7JC-01 2 176988776 176988776 C T HOXD9 Missense_Mutation p.T311I 0.43 deleterious(0) probably_damaging(1) TCGA-UF-A7JC-01 2 179484433 179484433 C A TTN Missense_Mutation p.Q15537H 0.37 TCGA-UF-A7JC-01 2 202631979 202631979 C T ALS2 Missense_Mutation p.V50M 0.54 tolerated(0.21) benign(0.003) TCGA-UF-A7JC-01 2 241075705 241075705 G A MYEOV2 Silent p.P20P 0.29 TCGA-UF-A7JC-01 3 108183634 108183634 C T MYH15 Missense_Mutation p.E548K 0.65 deleterious(0.01) probably_damaging(1) TCGA-UF-A7JC-01 3 129023505 129023505 C G HMCES Nonsense_Mutation p.S301* 0.17 TCGA-UF-A7JC-01 3 129023529 129023529 C T HMCES Missense_Mutation p.S309L 0.17 tolerated(0.09) benign(0.003) TCGA-UF-A7JC-01 3 129023602 129023602 C G HMCES Silent p.L333L 0.17 TCGA-UF-A7JC-01 3 142731068 142731068 A T U2SURP Missense_Mutation p.D32V 0.58 tolerated_low_confidence(0.2) benign(0.002) TCGA-UF-A7JC-01 4 138442114 138442114 G A PCDH18 3'UTR 0.82 TCGA-UF-A7JC-01 5 131008049 131008049 C A FNIP1 Missense_Mutation p.E696D 0.68 tolerated_low_confidence(0.4) benign(0.007) TCGA-UF-A7JC-01 5 26906904 26906904 G T CDH9 Silent p.A189A 0.39 TCGA-UF-A7JC-01 5 89953721 89953721 G T GPR98 Splice_Site p.X1460_splice 0.69 TCGA-UF-A7JC-01 6 128304107 128304107 G A PTPRK Missense_Mutation p.H1142Y 0.41 deleterious(0) probably_damaging(0.992) TCGA-UF-A7JC-01 6 55147083 55147083 G A HCRTR2 Missense_Mutation p.R389H 0.35 tolerated(0.26) benign(0.004) TCGA-UF-A7JC-01 7 100086348 100086348 C T NYAP1 Missense_Mutation p.P335L 0.38 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JC-01 7 149492440 149492440 G A SSPO RNA 0.44 TCGA-UF-A7JC-01 7 98495430 98495430 A G TRRAP Missense_Mutation p.M192V 0.47 benign(0.019) TCGA-UF-A7JC-01 8 144940411 144940411 G A EPPK1 Silent p.R2337R 0.04 TCGA-UF-A7JC-01 9 117062952 117062952 G T COL27A1 Silent p.G1562G 0.31 TCGA-UF-A7JC-01 9 127738413 127738413 G A SCAI Missense_Mutation p.A483V 0.13 tolerated(0.35) benign(0.027) TCGA-UF-A7JC-01 9 138377224 138377224 C T PPP1R26 Missense_Mutation p.R290C 0.44 deleterious(0) probably_damaging(0.942) TCGA-UF-A7JC-01 9 139350102 139350102 A C SEC16A Silent p.P1936P 0.19 TCGA-UF-A7JC-01 9 139350103 139350103 G T SEC16A Missense_Mutation p.P1936H 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-UF-A7JC-01 X 100611872 100611873 - CACTA BTK Nonsense_Mutation p.K417* 0.76 TCGA-UF-A7JC-01 X 15841049 15841049 G A ZRSR2 Missense_Mutation p.R378Q 0.40 tolerated(0.06) probably_damaging(0.956) TCGA-UF-A7JC-01 X 47445926 47445926 C T TIMP1 Missense_Mutation p.P154S 0.79 tolerated(0.19) benign(0.07) TCGA-UF-A7JD-01 10 105386929 105386929 T A SH3PXD2A Missense_Mutation p.Q212L 0.26 deleterious(0) possibly_damaging(0.476) TCGA-UF-A7JD-01 10 123722762 123722762 G A NSMCE4A Nonsense_Mutation p.R279* 0.23 TCGA-UF-A7JD-01 10 18885219 18885219 G C NSUN6 Missense_Mutation p.P232R 0.32 deleterious(0) probably_damaging(1) TCGA-UF-A7JD-01 10 37442528 37442528 A T ANKRD30A Missense_Mutation p.D523V 0.06 deleterious(0.04) benign(0.048) TCGA-UF-A7JD-01 10 38645305 38645305 G T HSD17B7P2 5'Flank 0.44 TCGA-UF-A7JD-01 10 51584858 51584858 T A NCOA4 Missense_Mutation p.N335K 0.17 deleterious(0.03) benign(0.068) TCGA-UF-A7JD-01 10 74095546 74095546 C T DNAJB12 3'UTR 0.17 TCGA-UF-A7JD-01 11 101323584 101323584 C T TRPC6 3'UTR 0.18 TCGA-UF-A7JD-01 11 101325759 101325759 C G TRPC6 Missense_Mutation p.R853T 0.13 tolerated(1) benign(0.002) TCGA-UF-A7JD-01 11 101325814 101325814 G T TRPC6 Missense_Mutation p.P835T 0.02 tolerated(0.55) benign(0.008) TCGA-UF-A7JD-01 11 102220696 102220696 A C BIRC2 Missense_Mutation p.Q37H 0.95 tolerated(0.55) benign(0.001) TCGA-UF-A7JD-01 11 113608317 113608317 T C ZW10 Missense_Mutation p.I665V 0.26 tolerated(0.34) benign(0.001) TCGA-UF-A7JD-01 11 58207450 58207450 A C OR5B12 Missense_Mutation p.F59V 0.14 deleterious_low_confidence(0.03) benign(0.064) TCGA-UF-A7JD-01 11 61249854 61249854 G C PPP1R32 Missense_Mutation p.V61L 0.10 deleterious(0.01) benign(0.409) TCGA-UF-A7JD-01 11 64812090 64812090 G A SAC3D1 Missense_Mutation p.S323N 0.43 tolerated(0.17) benign(0.031) TCGA-UF-A7JD-01 11 65403111 65403111 C T PCNXL3 Missense_Mutation p.R1766C 0.11 deleterious(0) probably_damaging(1) TCGA-UF-A7JD-01 11 76063373 76063373 T A PRKRIR Missense_Mutation p.E274V 0.40 tolerated(0.11) possibly_damaging(0.507) TCGA-UF-A7JD-01 11 92600283 92600283 C T FAT3 Missense_Mutation p.T4012M 0.12 probably_damaging(0.972) TCGA-UF-A7JD-01 11 94134200 94134200 C T GPR83 Missense_Mutation p.A72T 0.12 tolerated(0.08) possibly_damaging(0.77) TCGA-UF-A7JD-01 12 101790181 101790181 C A ARL1 Nonsense_Mutation p.E171* 0.17 TCGA-UF-A7JD-01 12 108685630 108685630 G A CMKLR1 Silent p.T370T 0.35 TCGA-UF-A7JD-01 12 41966931 41966931 G A PDZRN4 Missense_Mutation p.G784R 0.20 tolerated(0.51) benign(0.024) TCGA-UF-A7JD-01 12 42491746 42491746 T A GXYLT1 Missense_Mutation p.Q318H 0.14 deleterious(0) probably_damaging(1) TCGA-UF-A7JD-01 12 57908984 57908984 C G MARS Silent p.L752L 0.12 TCGA-UF-A7JD-01 12 62902291 62902291 A T MON2 Intron 0.31 TCGA-UF-A7JD-01 12 63328545 63328545 C A PPM1H 5'UTR 0.21 TCGA-UF-A7JD-01 13 21721546 21721546 C T SAP18 3'UTR 0.11 TCGA-UF-A7JD-01 13 47266765 47266765 G T LRCH1 Missense_Mutation p.S370I 0.06 tolerated(0.14) benign(0.252) TCGA-UF-A7JD-01 13 48832958 48832958 A G ITM2B Missense_Mutation p.Y197C 0.36 deleterious(0) probably_damaging(0.923) TCGA-UF-A7JD-01 14 106111063 106111074 GTGCTCTCGGAG - IGHG2 In_Frame_Del p.S19_T22del 0.11 TCGA-UF-A7JD-01 14 24470637 24470637 C A DHRS4L2 Silent p.L192L 0.28 TCGA-UF-A7JD-01 14 31364645 31364645 G A STRN3 Missense_Mutation p.A789V 0.16 deleterious(0) probably_damaging(0.989) TCGA-UF-A7JD-01 14 38679209 38679209 G A SSTR1 Silent p.T205T 0.06 TCGA-UF-A7JD-01 14 70989667 70989667 G A ADAM20 Missense_Mutation p.P653L 0.26 deleterious(0) benign(0.118) TCGA-UF-A7JD-01 14 71568843 71568843 C T PCNX Missense_Mutation p.S1909F 0.25 deleterious(0) probably_damaging(1) TCGA-UF-A7JD-01 14 75553754 75553754 C T NEK9 Silent p.Q928Q 0.26 TCGA-UF-A7JD-01 14 96706960 96706960 C T BDKRB2 Silent p.L99L 0.11 TCGA-UF-A7JD-01 15 34118906 34118906 G A RYR3 Missense_Mutation p.R3733H 0.25 benign(0.425) TCGA-UF-A7JD-01 15 52689527 52689527 G T MYO5A Missense_Mutation p.T397K 0.20 tolerated(0.06) possibly_damaging(0.45) TCGA-UF-A7JD-01 16 11370095 11370095 C T PRM2 Missense_Mutation p.E45K 0.34 tolerated_low_confidence(0.29) possibly_damaging(0.635) TCGA-UF-A7JD-01 16 27642470 27642470 G A KIAA0556 Missense_Mutation p.R132Q 0.36 deleterious(0) possibly_damaging(0.891) TCGA-UF-A7JD-01 16 31477790 31477790 G A ARMC5 Silent p.S796S 0.27 TCGA-UF-A7JD-01 16 66887318 66887318 G A CA7 Missense_Mutation p.D238N 0.18 deleterious(0) benign(0.259) TCGA-UF-A7JD-01 16 67645338 67645339 - A CTCF Frame_Shift_Ins p.T204Nfs*26 0.30 TCGA-UF-A7JD-01 17 11687618 11687618 G A DNAH9 Missense_Mutation p.R2608H 0.16 probably_damaging(0.999) TCGA-UF-A7JD-01 17 1538471 1538471 A G SCARF1 Missense_Mutation p.Y692H 0.14 deleterious(0) probably_damaging(1) TCGA-UF-A7JD-01 17 34190056 34190056 C T C17orf66 Silent p.E233E 0.14 TCGA-UF-A7JD-01 17 37263766 37263766 A G PLXDC1 Missense_Mutation p.V202A 0.29 deleterious(0) possibly_damaging(0.483) TCGA-UF-A7JD-01 17 4836918 4836918 C T GP1BA Missense_Mutation p.S340F 0.37 tolerated(0.76) benign(0.193) TCGA-UF-A7JD-01 17 56290379 56290379 C T MKS1 Silent p.P274P 0.25 TCGA-UF-A7JD-01 17 6547860 6547860 T C MED31 Missense_Mutation p.Y108C 0.15 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JD-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.59 TCGA-UF-A7JD-01 17 8172143 8172143 C T PFAS Silent p.A1225A 0.16 TCGA-UF-A7JD-01 18 6977756 6977756 C G LAMA1 Missense_Mutation p.L2105F 0.17 deleterious(0) probably_damaging(0.99) TCGA-UF-A7JD-01 19 13192670 13192670 G T NFIX Splice_Site p.X418_splice 0.17 TCGA-UF-A7JD-01 19 36051824 36051824 G T ATP4A Missense_Mutation p.A144E 0.16 deleterious(0) probably_damaging(0.993) TCGA-UF-A7JD-01 19 54140232 54140232 G T DPRX Missense_Mutation p.R189L 0.13 deleterious_low_confidence(0.03) benign(0.004) TCGA-UF-A7JD-01 19 55396782 55396782 G A FCAR Missense_Mutation p.R69Q 0.41 tolerated(0.37) benign(0.004) TCGA-UF-A7JD-01 19 57176533 57176533 C A ZNF835 Missense_Mutation p.A12S 0.45 tolerated(1) benign(0) TCGA-UF-A7JD-01 1 113242564 113242564 G A MOV10 Missense_Mutation p.G920R 0.16 deleterious(0) probably_damaging(1) TCGA-UF-A7JD-01 1 12322007 12322007 G A VPS13D Silent p.T488T 0.25 TCGA-UF-A7JD-01 1 150997141 150997141 C T PRUNE Silent p.I130I 0.07 TCGA-UF-A7JD-01 1 152187986 152187986 G A HRNR Missense_Mutation p.S2040F 0.11 unknown(0) TCGA-UF-A7JD-01 1 16464515 16464515 C - EPHA2 Frame_Shift_Del p.S382Mfs*11 0.24 TCGA-UF-A7JD-01 1 169821028 169821028 A G C1orf112 Missense_Mutation p.E772G 0.08 tolerated(0.19) benign(0.005) TCGA-UF-A7JD-01 1 176525491 176525491 G T PAPPA2 Silent p.L11L 0.18 TCGA-UF-A7JD-01 1 197404169 197404169 C A CRB1 Missense_Mutation p.T1059K 0.10 tolerated(0.84) benign(0.097) TCGA-UF-A7JD-01 1 202092323 202092323 C G GPR37L1 Missense_Mutation p.P78A 0.10 tolerated(0.06) benign(0.052) TCGA-UF-A7JD-01 1 205053173 205053173 G T TMEM81 Missense_Mutation p.F92L 0.22 tolerated(0.16) probably_damaging(0.998) TCGA-UF-A7JD-01 1 208218411 208218411 C A PLXNA2 Splice_Site p.X1213_splice 0.15 TCGA-UF-A7JD-01 1 208218412 208218412 C A PLXNA2 Missense_Mutation p.M1213I 0.16 tolerated(0.53) benign(0.007) TCGA-UF-A7JD-01 1 213068366 213068366 A G FLVCR1 Missense_Mutation p.I522V 0.16 tolerated(0.7) benign(0.001) TCGA-UF-A7JD-01 1 226342369 226342369 C A ACBD3 Missense_Mutation p.A357S 0.48 tolerated(0.41) benign(0.183) TCGA-UF-A7JD-01 1 229637795 229637795 C A NUP133 Missense_Mutation p.C119F 0.47 tolerated(0.18) benign(0.061) TCGA-UF-A7JD-01 1 244715797 244715797 G A C1orf101 Missense_Mutation p.S237N 0.10 deleterious(0) probably_damaging(0.995) TCGA-UF-A7JD-01 1 52744251 52744251 A T ZFYVE9 Missense_Mutation p.N945I 0.12 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JD-01 20 19560691 19560691 C T SLC24A3 Silent p.F132F 0.21 TCGA-UF-A7JD-01 20 30064235 30064235 C A REM1 5'UTR 0.20 TCGA-UF-A7JD-01 20 50048638 50048638 C T NFATC2 Silent p.Q896Q 0.06 TCGA-UF-A7JD-01 20 50048821 50048821 C T NFATC2 Silent p.E835E 0.05 TCGA-UF-A7JD-01 20 50049221 50049221 A G NFATC2 Missense_Mutation p.L702P 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-UF-A7JD-01 20 868980 868980 G C ANGPT4 Missense_Mutation p.Q190E 0.07 deleterious(0) benign(0.04) TCGA-UF-A7JD-01 21 17199409 17199409 T C USP25 Missense_Mutation p.I527T 0.06 tolerated(0.67) benign(0.006) TCGA-UF-A7JD-01 21 27062254 27062254 C T JAM2 Silent p.V70V 0.20 TCGA-UF-A7JD-01 21 39086937 39086937 A - KCNJ6 Frame_Shift_Del p.S175Lfs*17 0.13 TCGA-UF-A7JD-01 22 26348276 26348276 G A MYO18B Missense_Mutation p.E1953K 0.35 deleterious(0.04) benign(0.039) TCGA-UF-A7JD-01 22 40819563 40819563 T C MKL1 Missense_Mutation p.K202E 0.15 deleterious(0) probably_damaging(0.952) TCGA-UF-A7JD-01 22 50904500 50904500 C T SBF1 Missense_Mutation p.D301N 0.39 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JD-01 2 179432224 179432224 C A TTN Missense_Mutation p.R26212I 0.52 TCGA-UF-A7JD-01 2 186678685 186678685 A G FSIP2 Silent p.R6836R 0.39 TCGA-UF-A7JD-01 2 198400319 198400319 C G HSPE1-MOB4 Silent p.G99G 0.09 TCGA-UF-A7JD-01 2 21233058 21233058 C T APOB Missense_Mutation p.D2228N 0.06 benign(0.001) TCGA-UF-A7JD-01 2 21234388 21234388 A C APOB Silent p.V1784V 0.15 TCGA-UF-A7JD-01 2 219736219 219736219 C T WNT6 Missense_Mutation p.T105M 0.24 deleterious(0) probably_damaging(0.936) TCGA-UF-A7JD-01 2 233635903 233635903 A G KCNJ13 Missense_Mutation p.M57T 0.28 deleterious(0.05) benign(0.396) TCGA-UF-A7JD-01 2 29606678 29606678 C A ALK Missense_Mutation p.R401L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-UF-A7JD-01 2 88425818 88425818 C T FABP1 Silent p.S39S 0.18 TCGA-UF-A7JD-01 3 109046693 109046693 C A DPPA4 3'UTR 0.12 TCGA-UF-A7JD-01 3 174951994 174951994 G C NAALADL2 Missense_Mutation p.K273N 0.10 deleterious(0) benign(0.07) TCGA-UF-A7JD-01 4 13571744 13571744 G T BOD1L1 Missense_Mutation p.T3016K 0.22 benign(0.287) TCGA-UF-A7JD-01 4 1834493 1834493 C T LETM1 Missense_Mutation p.R353H 0.18 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JD-01 4 2933350 2933350 T A MFSD10 Missense_Mutation p.M319L 0.31 deleterious(0.03) benign(0.015) TCGA-UF-A7JD-01 4 43032625 43032625 T A GRXCR1 3'UTR 0.34 TCGA-UF-A7JD-01 4 55964379 55964379 G A KDR Missense_Mutation p.P812S 0.16 deleterious(0) probably_damaging(1) TCGA-UF-A7JD-01 4 66356365 66356365 T G EPHA5 Missense_Mutation p.I378L 0.22 tolerated(0.07) benign(0.014) TCGA-UF-A7JD-01 4 9784102 9784102 G T DRD5 Missense_Mutation p.R150L 0.33 deleterious(0) probably_damaging(0.922) TCGA-UF-A7JD-01 5 140802964 140802964 C T PCDHGA11 Missense_Mutation p.R724C 0.18 deleterious_low_confidence(0.01) benign(0.151) TCGA-UF-A7JD-01 5 154179150 154179150 G T LARP1 Splice_Site p.X383_splice 0.15 TCGA-UF-A7JD-01 5 154200942 154200946 GCCCA CCCC FAXDC2 Frame_Shift_Del p.M240Rfs*166 0.11 TCGA-UF-A7JD-01 5 23521230 23521230 A T PRDM9 Missense_Mutation p.K150N 0.24 tolerated_low_confidence(0.08) benign(0.074) TCGA-UF-A7JD-01 5 39311245 39311245 G A C9 Missense_Mutation p.R369W 0.36 deleterious(0) probably_damaging(0.93) TCGA-UF-A7JD-01 5 76335360 76335360 A G AGGF1 Missense_Mutation p.N229S 0.17 tolerated(0.5) benign(0.074) TCGA-UF-A7JD-01 6 144144895 144144895 G C PHACTR2 3'UTR 0.07 TCGA-UF-A7JD-01 6 26123867 26123867 G C HIST1H2BC Missense_Mutation p.T89S 0.43 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-UF-A7JD-01 6 26271503 26271503 T A HIST1H3G Missense_Mutation p.K37M 0.23 deleterious_low_confidence(0.01) benign(0.164) TCGA-UF-A7JD-01 6 36982441 36982441 C A FGD2 Missense_Mutation p.F281L 0.29 tolerated(0.06) possibly_damaging(0.664) TCGA-UF-A7JD-01 6 93974414 93974414 G A EPHA7 Missense_Mutation p.A547V 0.10 tolerated(0.4) benign(0) TCGA-UF-A7JD-01 7 100732424 100732424 G A TRIM56 Missense_Mutation p.V611M 0.21 deleterious(0) probably_damaging(0.982) TCGA-UF-A7JD-01 7 119914694 119914694 C T KCND2 Missense_Mutation p.A3V 0.24 deleterious_low_confidence(0.03) probably_damaging(0.909) TCGA-UF-A7JD-01 7 127013761 127013761 T C ZNF800 Silent p.K543K 0.12 TCGA-UF-A7JD-01 7 14216401 14216401 T G DGKB Intron 0.13 TCGA-UF-A7JD-01 7 149514780 149514780 C G SSPO RNA 0.21 TCGA-UF-A7JD-01 7 5769095 5769095 C T RNF216 Missense_Mutation p.E453K 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-UF-A7JD-01 8 101936267 101936267 T C YWHAZ Silent p.E198E 0.13 TCGA-UF-A7JD-01 8 107719171 107719171 A G OXR1 Silent p.A475A 0.18 TCGA-UF-A7JD-01 8 124096419 124096419 A T TBC1D31 Missense_Mutation p.S120C 0.13 deleterious(0.02) possibly_damaging(0.887) TCGA-UF-A7JD-01 8 35647965 35647965 G A UNC5D Missense_Mutation p.D916N 0.05 tolerated(0.99) probably_damaging(1) TCGA-UF-A7JD-01 8 42585743 42585743 A G CHRNB3 Missense_Mutation p.T86A 0.27 tolerated(0.47) benign(0.314) TCGA-UF-A7JD-01 8 73480359 73480359 G T KCNB2 Missense_Mutation p.E130D 0.48 tolerated(0.08) probably_damaging(0.923) TCGA-UF-A7JD-01 8 99441164 99441164 G A KCNS2 Silent p.G319G 0.49 TCGA-UF-A7JD-01 9 100380037 100380037 A G TSTD2 Splice_Site p.X201_splice 0.06 TCGA-UF-A7JD-01 9 107584853 107584853 C T ABCA1 Missense_Mutation p.G918S 0.16 deleterious(0.02) possibly_damaging(0.858) TCGA-UF-A7JD-01 9 131021668 131021668 C A GOLGA2 Silent p.V598V 0.27 TCGA-UF-A7JD-01 9 131772963 131772963 C A SH3GLB2 Missense_Mutation p.D212Y 0.52 tolerated(0.09) possibly_damaging(0.905) TCGA-UF-A7JD-01 9 140652378 140652378 A G EHMT1 Silent p.A472A 0.47 TCGA-UF-A7JD-01 X 100265668 100265668 T C TRMT2B Missense_Mutation p.K473E 0.45 deleterious(0) possibly_damaging(0.491) TCGA-UF-A7JD-01 X 117582899 117582899 C T WDR44 Silent p.D897D 0.58 TCGA-UF-A7JD-01 X 148072908 148072908 T C AFF2 3'UTR 0.13 TCGA-UF-A7JD-01 X 73061279 73061279 C T XIST RNA 0.31 TCGA-UF-A7JF-01 10 117704390 117704390 C T ATRNL1 3'UTR 0.22 TCGA-UF-A7JF-01 10 124909540 124909540 G A HMX2 Silent p.P241P 0.20 TCGA-UF-A7JF-01 10 43606838 43606838 T G RET Missense_Mutation p.Y483D 0.34 deleterious(0.02) benign(0.344) TCGA-UF-A7JF-01 10 50531159 50531159 C T C10orf71 Missense_Mutation p.S190F 0.19 deleterious(0) probably_damaging(1) TCGA-UF-A7JF-01 10 85909964 85909964 G A GHITM Missense_Mutation p.G249E 0.27 deleterious(0) possibly_damaging(0.77) TCGA-UF-A7JF-01 10 89692922 89692922 T C PTEN Missense_Mutation p.C136R 0.29 deleterious(0.02) possibly_damaging(0.634) TCGA-UF-A7JF-01 11 104778250 104778250 C T RP11-693N9.2 RNA 0.44 TCGA-UF-A7JF-01 11 128680581 128680581 G T FLI1 Missense_Mutation p.G353C 0.32 deleterious(0) probably_damaging(1) TCGA-UF-A7JF-01 11 20178009 20178009 C T DBX1 Silent p.P300P 0.26 TCGA-UF-A7JF-01 11 32456486 32456486 G T WT1 Missense_Mutation p.P136T 0.27 deleterious_low_confidence(0.02) benign(0.39) TCGA-UF-A7JF-01 11 46337910 46337910 G A CREB3L1 Missense_Mutation p.A369T 0.19 tolerated(0.26) benign(0.066) TCGA-UF-A7JF-01 11 5254302 5254302 C A HBD Silent p.V112V 0.23 TCGA-UF-A7JF-01 11 55135920 55135920 A T OR4A15 Missense_Mutation p.Q187H 0.30 tolerated_low_confidence(0.14) probably_damaging(0.959) TCGA-UF-A7JF-01 11 5878869 5878869 C G OR52E8 Missense_Mutation p.G22R 0.24 deleterious(0.01) probably_damaging(1) TCGA-UF-A7JF-01 11 60567405 60567405 C G MS4A10 3'UTR 0.23 TCGA-UF-A7JF-01 11 63396686 63396686 C T ATL3 3'UTR 0.40 TCGA-UF-A7JF-01 11 6653330 6653330 C A DCHS1 Missense_Mutation p.G1138V 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-UF-A7JF-01 12 125438655 125438655 G A DHX37 Silent p.L852L 0.43 TCGA-UF-A7JF-01 12 4920787 4920787 C T KCNA6 Missense_Mutation p.T527M 0.43 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-UF-A7JF-01 12 53608237 53608237 T C RARG Missense_Mutation p.Y210C 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-UF-A7JF-01 12 5744415 5744415 C G ANO2 Silent p.R573R 0.17 TCGA-UF-A7JF-01 12 65633925 65633925 G A LEMD3 Missense_Mutation p.R678Q 0.27 tolerated(0.11) probably_damaging(0.98) TCGA-UF-A7JF-01 12 6618931 6618931 A C NCAPD2 Missense_Mutation p.H59P 0.20 deleterious(0) probably_damaging(0.987) TCGA-UF-A7JF-01 12 83424619 83424619 G C TMTC2 Missense_Mutation p.E705Q 0.23 tolerated(1) benign(0.004) TCGA-UF-A7JF-01 12 8374480 8374480 C T FAM90A1 Missense_Mutation p.V445I 0.06 deleterious(0.01) probably_damaging(0.972) TCGA-UF-A7JF-01 12 91502099 91502099 T A LUM Missense_Mutation p.I220F 0.30 deleterious(0) probably_damaging(0.936) TCGA-UF-A7JF-01 12 95611607 95611607 G T VEZT 5'UTR 0.25 TCGA-UF-A7JF-01 12 95869846 95869846 G A METAP2 Splice_Site p.X51_splice 0.37 TCGA-UF-A7JF-01 13 49796314 49796314 G A MLNR Missense_Mutation p.S347N 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-UF-A7JF-01 13 95727694 95727694 A G ABCC4 Missense_Mutation p.L933S 0.34 deleterious(0.01) possibly_damaging(0.824) TCGA-UF-A7JF-01 14 106208309 106208309 C T IGHG1 Silent p.L197L 0.25 TCGA-UF-A7JF-01 14 23451243 23451246 CCGC - AJUBA Frame_Shift_Del p.R77Pfs*164 0.53 TCGA-UF-A7JF-01 14 77786985 77786985 G T POMT2 Missense_Mutation p.L14M 0.29 deleterious_low_confidence(0.02) benign(0.319) TCGA-UF-A7JF-01 14 77786986 77786986 C T POMT2 Silent p.E13E 0.28 TCGA-UF-A7JF-01 14 94933514 94933514 C G SERPINA9 Missense_Mutation p.K296N 0.30 tolerated(0.1) benign(0.441) TCGA-UF-A7JF-01 14 95670747 95670747 G A CLMN Silent p.R313R 0.23 TCGA-UF-A7JF-01 15 33990140 33990140 C G RYR3 Silent p.G2064G 0.25 TCGA-UF-A7JF-01 15 74043527 74043527 C A C15orf59 5'UTR 0.36 TCGA-UF-A7JF-01 16 19548505 19548505 A G CCP110 Missense_Mutation p.H505R 0.17 tolerated(0.22) benign(0.075) TCGA-UF-A7JF-01 17 39775833 39775833 G T KRT17 3'UTR 0.38 TCGA-UF-A7JF-01 17 40370209 40370209 G T STAT5B Missense_Mutation p.Q377K 0.36 tolerated(0.58) benign(0.003) TCGA-UF-A7JF-01 17 43368002 43368003 CT - MAP3K14 RNA 0.19 TCGA-UF-A7JF-01 17 44851059 44851059 G A WNT3 Silent p.A99A 0.45 TCGA-UF-A7JF-01 17 7463379 7463379 G A TNFSF12-TNFSF13 Silent p.V213V 0.30 TCGA-UF-A7JF-01 17 7578254 7578254 C A TP53 Nonsense_Mutation p.G199* 0.25 TCGA-UF-A7JF-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.32 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JF-01 17 78184602 78184602 G A SGSH Silent p.L386L 0.32 TCGA-UF-A7JF-01 18 14106177 14106177 T C ZNF519 Missense_Mutation p.Y121C 0.52 tolerated(0.14) benign(0.082) TCGA-UF-A7JF-01 18 30260493 30260493 G A KLHL14 Silent p.G436G 0.14 TCGA-UF-A7JF-01 18 44272161 44272161 C T ST8SIA5 Silent p.A94A 0.17 TCGA-UF-A7JF-01 18 58039270 58039270 T C MC4R Missense_Mutation p.T105A 0.16 tolerated(0.63) benign(0.279) TCGA-UF-A7JF-01 18 61002491 61002491 T G KDSR Missense_Mutation p.Q293P 0.32 deleterious(0) probably_damaging(0.939) TCGA-UF-A7JF-01 18 65179227 65179228 - A DSEL Frame_Shift_Ins p.N884Qfs*3 0.18 TCGA-UF-A7JF-01 18 8248168 8248168 A G PTPRM Missense_Mutation p.I850V 0.54 tolerated(0.93) benign(0.023) TCGA-UF-A7JF-01 19 10600002 10600002 T C KEAP1 Missense_Mutation p.Y525C 0.24 deleterious(0) probably_damaging(0.991) TCGA-UF-A7JF-01 19 10610310 10610310 C A KEAP1 Nonsense_Mutation p.E134* 0.22 TCGA-UF-A7JF-01 19 40739432 40739432 C T AKT2 3'UTR 0.20 TCGA-UF-A7JF-01 19 43428907 43428907 C T PSG7 3'UTR 0.18 TCGA-UF-A7JF-01 19 46329491 46329491 C A SYMPK Missense_Mutation p.K774N 0.24 tolerated(0.16) benign(0.003) TCGA-UF-A7JF-01 19 5221131 5221131 G A PTPRS Missense_Mutation p.T1112M 0.33 tolerated(0.11) possibly_damaging(0.721) TCGA-UF-A7JF-01 19 53572344 53572344 G C ZNF160 Missense_Mutation p.F481L 0.28 deleterious(0) probably_damaging(0.95) TCGA-UF-A7JF-01 19 53945872 53945872 C G TPM3P9 RNA 0.13 TCGA-UF-A7JF-01 19 56539103 56539103 C G NLRP5 Missense_Mutation p.H502D 0.22 deleterious(0.01) benign(0.001) TCGA-UF-A7JF-01 19 58639245 58639245 T C ZNF329 Silent p.%3D 0.34 TCGA-UF-A7JF-01 19 8389896 8389896 T A KANK3 Missense_Mutation p.E674V 0.34 deleterious(0) possibly_damaging(0.607) TCGA-UF-A7JF-01 1 100387230 100387230 C T AGL 3'UTR 0.25 TCGA-UF-A7JF-01 1 100533616 100533616 G C HIAT1 Silent p.V190V 0.28 TCGA-UF-A7JF-01 1 10397556 10397556 C T KIF1B Silent p.I1083I 0.30 TCGA-UF-A7JF-01 1 109477344 109477345 - T CLCC1 Frame_Shift_Ins p.R535Kfs*54 0.18 TCGA-UF-A7JF-01 1 118413026 118413026 G C GDAP2 3'UTR 0.55 TCGA-UF-A7JF-01 1 12939306 12939306 T G PRAMEF4 3'UTR 0.25 TCGA-UF-A7JF-01 1 145021132 145021132 G T RP11-326G21.1 3'Flank 0.04 TCGA-UF-A7JF-01 1 145304642 145304642 C T NBPF10 Silent p.H525H 0.08 TCGA-UF-A7JF-01 1 153617664 153617664 A G CHTOP Silent p.A222A 0.37 TCGA-UF-A7JF-01 1 155165687 155165687 G T THBS3 Missense_Mutation p.T939K 0.24 deleterious(0.02) possibly_damaging(0.593) TCGA-UF-A7JF-01 1 1563210 1563210 G A MIB2 Splice_Site p.X675_splice 0.32 TCGA-UF-A7JF-01 1 156595246 156595246 C A HAPLN2 3'UTR 0.30 TCGA-UF-A7JF-01 1 158576474 158576474 C T OR10Z1 Silent p.L82L 0.32 TCGA-UF-A7JF-01 1 158615117 158615117 C A SPTA1 Missense_Mutation p.S1352I 0.22 deleterious(0) benign(0.007) TCGA-UF-A7JF-01 1 159276016 159276016 C T FCER1A Silent p.L190L 0.34 TCGA-UF-A7JF-01 1 17029228 17029228 G A ESPNP RNA 0.06 TCGA-UF-A7JF-01 1 200967613 200967613 C T KIF21B Missense_Mutation p.R659Q 0.26 deleterious(0) probably_damaging(0.984) TCGA-UF-A7JF-01 1 237791330 237791330 G C RYR2 Silent p.L2130L 0.35 TCGA-UF-A7JF-01 1 249142406 249142406 C T ZNF672 Silent p.F311F 0.41 TCGA-UF-A7JF-01 1 32222995 32222995 G C BAI2 5'UTR 0.23 TCGA-UF-A7JF-01 1 45269865 45269865 T A PLK3 Missense_Mutation p.V430E 0.35 tolerated(0.09) possibly_damaging(0.901) TCGA-UF-A7JF-01 1 85550274 85550274 C T WDR63 Missense_Mutation p.P146S 0.30 tolerated(0.59) benign(0.002) TCGA-UF-A7JF-01 20 47614970 47614971 - T ARFGEF2 Frame_Shift_Ins p.Y1121Lfs*24 0.30 TCGA-UF-A7JF-01 20 61637728 61637728 G T BHLHE23 Missense_Mutation p.N117K 0.22 deleterious(0) possibly_damaging(0.678) TCGA-UF-A7JF-01 21 41514551 41514551 T C DSCAM Missense_Mutation p.K1114E 0.32 tolerated(0.06) benign(0.069) TCGA-UF-A7JF-01 22 17072765 17072765 C A CCT8L2 Missense_Mutation p.G226W 0.21 deleterious(0) probably_damaging(0.985) TCGA-UF-A7JF-01 22 17469020 17469020 G C GAB4 Silent p.L172L 0.28 TCGA-UF-A7JF-01 22 42264705 42264705 G A SREBF2 Missense_Mutation p.R210Q 0.70 tolerated(0.9) probably_damaging(0.99) TCGA-UF-A7JF-01 22 45309885 45309885 G C PHF21B Silent p.P216P 0.63 TCGA-UF-A7JF-01 2 11054070 11054070 C T KCNF1 3'UTR 0.27 TCGA-UF-A7JF-01 2 120709607 120709607 G A PTPN4 Missense_Mutation p.R572Q 0.29 deleterious(0.04) possibly_damaging(0.767) TCGA-UF-A7JF-01 2 122205849 122205849 C T CLASP1 Intron 0.21 TCGA-UF-A7JF-01 2 125530440 125530440 T A CNTNAP5 Silent p.S865S 0.30 TCGA-UF-A7JF-01 2 128910376 128910376 C T UGGT1 Nonsense_Mutation p.Q679* 0.23 TCGA-UF-A7JF-01 2 136873272 136873272 A T CXCR4 Missense_Mutation p.Y80N 0.58 deleterious(0) probably_damaging(1) TCGA-UF-A7JF-01 2 198950676 198950676 A T PLCL1 Missense_Mutation p.Y812F 0.32 deleterious(0.02) possibly_damaging(0.58) TCGA-UF-A7JF-01 2 230655844 230655844 C T TRIP12 Nonsense_Mutation p.W1438* 0.26 TCGA-UF-A7JF-01 2 241078630 241078631 - G OTOS Frame_Shift_Ins p.L76Pfs*56 0.21 TCGA-UF-A7JF-01 2 47641556 47641556 A G MSH2 Missense_Mutation p.Q314R 0.27 deleterious(0.03) possibly_damaging(0.735) TCGA-UF-A7JF-01 2 51254857 51254857 A T NRXN1 Silent p.R185R 0.25 TCGA-UF-A7JF-01 2 51255184 51255184 G T NRXN1 Nonsense_Mutation p.C76* 0.39 TCGA-UF-A7JF-01 2 73198781 73198781 C A SFXN5 Missense_Mutation p.R220L 0.20 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JF-01 2 74274706 74274706 T A TET3 Silent p.P419P 0.36 TCGA-UF-A7JF-01 3 112732831 112732831 T C C3orf17 Missense_Mutation p.I104V 0.42 tolerated(0.07) benign(0.054) TCGA-UF-A7JF-01 3 122134164 122134164 T C WDR5B Missense_Mutation p.Y71C 0.22 tolerated(0.17) benign(0.006) TCGA-UF-A7JF-01 3 133647145 133647145 C - C3orf36 3'UTR 0.18 TCGA-UF-A7JF-01 3 137964058 137964058 G T ARMC8 Intron 0.26 TCGA-UF-A7JF-01 3 140409854 140409854 G T TRIM42 Missense_Mutation p.M635I 0.17 tolerated(0.15) benign(0.022) TCGA-UF-A7JF-01 3 150127041 150127041 C T TSC22D2 5'UTR 0.35 TCGA-UF-A7JF-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-UF-A7JF-01 3 196387701 196387701 G A NRROS Missense_Mutation p.G396E 0.18 deleterious(0.03) benign(0.202) TCGA-UF-A7JF-01 3 49167412 49167412 C T LAMB2 Missense_Mutation p.R422H 0.46 deleterious(0.01) benign(0.009) TCGA-UF-A7JF-01 3 98072869 98072869 C A OR5K4 Missense_Mutation p.P58T 0.21 deleterious(0) possibly_damaging(0.696) TCGA-UF-A7JF-01 4 129867198 129867198 G A SCLT1 Missense_Mutation p.T468M 0.10 deleterious(0) benign(0.333) TCGA-UF-A7JF-01 4 39460195 39460195 C T RPL9 5'UTR 0.50 TCGA-UF-A7JF-01 4 75248411 75248411 G A EREG Missense_Mutation p.V110I 0.48 tolerated(0.06) possibly_damaging(0.704) TCGA-UF-A7JF-01 5 137223157 137223157 G T MYOT 3'UTR 0.64 TCGA-UF-A7JF-01 5 140562042 140562042 T A PCDHB16 5'UTR 0.30 TCGA-UF-A7JF-01 5 176700720 176700720 G T NSD1 Nonsense_Mutation p.E1853* 0.47 TCGA-UF-A7JF-01 5 74872759 74872759 G A POLK Splice_Site p.X232_splice 0.53 TCGA-UF-A7JF-01 6 149918671 149918671 C T KATNA1 Silent p.E374E 0.42 TCGA-UF-A7JF-01 6 49696507 49696507 C A CRISP3 Missense_Mutation p.C248F 0.25 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JF-01 6 52367940 52367940 C T TRAM2 3'UTR 0.39 TCGA-UF-A7JF-01 6 54025547 54025547 G C MLIP Missense_Mutation p.D282H 0.24 deleterious(0.03) probably_damaging(0.922) TCGA-UF-A7JF-01 6 73919490 73919490 G A RP11-257K9.8 3'UTR 0.12 TCGA-UF-A7JF-01 7 101847834 101847834 C G CUX1 Missense_Mutation p.P1035R 0.29 tolerated(0.07) unknown(0) TCGA-UF-A7JF-01 7 102912302 102912302 A G DPY19L2P2 RNA 0.07 TCGA-UF-A7JF-01 7 11053505 11053505 G C PHF14 Missense_Mutation p.G393R 0.31 deleterious(0) probably_damaging(0.99) TCGA-UF-A7JF-01 7 138874200 138874200 A T TTC26 3'UTR 0.26 TCGA-UF-A7JF-01 7 16815960 16815960 G A TSPAN13 Missense_Mutation p.G63D 0.24 deleterious(0) probably_damaging(1) TCGA-UF-A7JF-01 7 44685013 44685013 C G OGDH Missense_Mutation p.L104V 0.25 tolerated(0.61) benign(0.034) TCGA-UF-A7JF-01 7 81635108 81635108 A T CACNA2D1 Missense_Mutation p.D496E 0.29 tolerated(0.28) benign(0.251) TCGA-UF-A7JF-01 7 99054204 99054204 C A CPSF4 3'UTR 0.21 TCGA-UF-A7JF-01 8 11174449 11174449 G A MTMR9 Intron 0.16 TCGA-UF-A7JF-01 8 70970893 70970893 C G PRDM14 Missense_Mutation p.E456D 0.23 deleterious(0.01) probably_damaging(0.978) TCGA-UF-A7JF-01 8 81411836 81411836 A G ZBTB10 Silent p.K360K 0.11 TCGA-UF-A7JF-01 8 86044044 86044044 G T LRRCC1 Missense_Mutation p.A606S 0.27 deleterious(0) probably_damaging(0.99) TCGA-UF-A7JF-01 9 109691304 109691304 A T ZNF462 Missense_Mutation p.Y1704F 0.24 probably_damaging(0.978) TCGA-UF-A7JF-01 9 125797596 125797596 G T GPR21 Missense_Mutation p.A251S 0.41 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JF-01 9 140055590 140055590 A T GRIN1 Missense_Mutation p.N448I 0.40 deleterious(0.01) benign(0.081) TCGA-UF-A7JF-01 9 90343215 90343215 C A CTSL Silent p.P100P 0.14 TCGA-UF-A7JF-01 9 94171722 94171722 T C NFIL3 Missense_Mutation p.Y432C 0.18 deleterious(0) probably_damaging(0.959) TCGA-UF-A7JF-01 X 110491851 110491851 C G CAPN6 Missense_Mutation p.G477A 0.58 tolerated(0.05) benign(0.001) TCGA-UF-A7JF-01 X 11790285 11790285 G A MSL3 Nonsense_Mutation p.W431* 0.60 TCGA-UF-A7JF-01 X 20062588 20062588 T A MAP7D2 Missense_Mutation p.K258M 0.62 deleterious(0) probably_damaging(0.993) TCGA-UF-A7JF-01 X 69811633 69811633 C A TEX11 Missense_Mutation p.C718F 0.56 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JF-01 Y 23562838 23562838 T G RBMY2EP RNA 0.74 TCGA-UF-A7JH-01 10 102049774 102049774 C T PKD2L1 Missense_Mutation p.V750M 0.32 tolerated_low_confidence(0.73) benign(0.003) TCGA-UF-A7JH-01 10 50820313 50820313 C T SLC18A3 Silent p.G509G 0.24 TCGA-UF-A7JH-01 10 75552435 75552435 C A ZSWIM8 Missense_Mutation p.P713H 0.48 tolerated_low_confidence(0.09) benign(0.35) TCGA-UF-A7JH-01 11 1094728 1094728 C T MUC2 Missense_Mutation p.T1939M 0.28 unknown(0) TCGA-UF-A7JH-01 11 125514440 125514440 C T CHEK1 Nonsense_Mutation p.R379* 0.10 TCGA-UF-A7JH-01 11 17470205 17470205 T C ABCC8 Missense_Mutation p.N397S 0.33 deleterious(0.05) benign(0.105) TCGA-UF-A7JH-01 11 22770774 22770774 A - GAS2 Frame_Shift_Del p.K196Rfs*11 0.23 TCGA-UF-A7JH-01 11 601588 601588 G C PHRF1 Missense_Mutation p.V347L 0.28 tolerated(0.09) benign(0.384) TCGA-UF-A7JH-01 11 6243788 6243788 G A FAM160A2 Missense_Mutation p.R359W 0.29 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JH-01 11 65268905 65268905 G A MALAT1 RNA 0.26 TCGA-UF-A7JH-01 11 76234333 76234333 G A C11orf30 Missense_Mutation p.G607R 0.25 deleterious(0) probably_damaging(0.996) TCGA-UF-A7JH-01 11 77669828 77669828 T A INTS4 Missense_Mutation p.Q254L 0.36 deleterious(0.01) benign(0.047) TCGA-UF-A7JH-01 12 10999958 10999958 C T PRR4 Missense_Mutation p.D37N 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.728) TCGA-UF-A7JH-01 12 112690230 112690230 G C HECTD4 Missense_Mutation p.Q1038E 0.57 possibly_damaging(0.838) TCGA-UF-A7JH-01 12 118473017 118473018 - C WSB2 Splice_Site p.X315_splice 0.20 TCGA-UF-A7JH-01 12 122656816 122656816 G T IL31 3'UTR 0.38 TCGA-UF-A7JH-01 12 2714952 2714952 G A CACNA1C Silent p.K1072K 0.49 TCGA-UF-A7JH-01 12 41463813 41463813 C T CNTN1 Silent p.G1011G 0.21 TCGA-UF-A7JH-01 12 49438185 49438185 C T KMT2D Splice_Site p.X1695_splice 0.35 TCGA-UF-A7JH-01 12 49691346 49691346 G A PRPH Silent p.E401E 0.45 TCGA-UF-A7JH-01 12 70980858 70980858 C A PTPRB Missense_Mutation p.R747L 0.64 deleterious(0.01) probably_damaging(0.985) TCGA-UF-A7JH-01 13 37011903 37011903 G A CCNA1 Silent p.G145G 0.64 TCGA-UF-A7JH-01 14 105715748 105715748 C T BTBD6 Silent p.L120L 0.31 TCGA-UF-A7JH-01 14 20345218 20345218 C A OR4K2 Missense_Mutation p.S264R 0.12 tolerated(0.35) possibly_damaging(0.493) TCGA-UF-A7JH-01 14 20586096 20586096 G T OR4K17 Silent p.V177V 0.45 TCGA-UF-A7JH-01 14 24784885 24784885 C A LTB4R Missense_Mutation p.P10T 0.11 tolerated(0.64) benign(0.002) TCGA-UF-A7JH-01 14 35871129 35871164 AAATTTTTTCTTCTTTTTTCTTTTTTTAGAAAAATA TATAAATTT NFKBIA 3'UTR 0.25 TCGA-UF-A7JH-01 14 60097285 60097285 G A RTN1 Intron 0.34 TCGA-UF-A7JH-01 14 65239534 65239534 C T SPTB Missense_Mutation p.D1773N 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-UF-A7JH-01 14 95108141 95108141 T C SERPINA13P RNA 0.40 TCGA-UF-A7JH-01 14 95910816 95910816 C T SYNE3 Intron 0.35 TCGA-UF-A7JH-01 15 34080543 34080543 C T RYR3 Silent p.A3238A 0.07 TCGA-UF-A7JH-01 15 39892927 39892927 T C FSIP1 3'UTR 0.50 TCGA-UF-A7JH-01 15 54626011 54626011 C T UNC13C Missense_Mutation p.S1514L 0.70 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-UF-A7JH-01 15 78640403 78640403 G T CRABP1 3'UTR 0.39 TCGA-UF-A7JH-01 15 91420200 91420200 C G FURIN Silent p.V149V 0.67 TCGA-UF-A7JH-01 16 20682933 20682933 G A ACSM1 Silent p.F224F 0.36 TCGA-UF-A7JH-01 16 3107600 3107603 CTTT - MMP25 Frame_Shift_Del p.F332Sfs*35 0.14 TCGA-UF-A7JH-01 16 721934 721934 C G RHOT2 Silent p.P343P 0.38 TCGA-UF-A7JH-01 17 14140021 14140021 G A CDRT15 Missense_Mutation p.R44C 0.47 tolerated_low_confidence(0.16) benign(0.003) TCGA-UF-A7JH-01 17 2298352 2298352 A G MNT Missense_Mutation p.I157T 0.50 tolerated(0.65) benign(0.004) TCGA-UF-A7JH-01 17 4080459 4080459 C T ANKFY1 Missense_Mutation p.A955T 0.06 deleterious(0) probably_damaging(1) TCGA-UF-A7JH-01 17 7577095 7577096 - TCTC TP53 Frame_Shift_Ins p.D281Efs*26 0.60 TCGA-UF-A7JH-01 17 76816075 76816075 C T USP36 Missense_Mutation p.R283H 0.70 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JH-01 18 29447388 29447388 T C TRAPPC8 Missense_Mutation p.I814V 0.35 tolerated(0.25) benign(0.041) TCGA-UF-A7JH-01 19 11943101 11943101 T C ZNF440 Silent p.C370C 0.09 TCGA-UF-A7JH-01 19 36507075 36507075 C T CLIP3 Silent p.A543A 0.21 TCGA-UF-A7JH-01 19 47223864 47223865 CG ATA STRN4 Frame_Shift_Ins p.V760Ifs*24 0.20 TCGA-UF-A7JH-01 19 53762570 53762570 C G VN1R2 Missense_Mutation p.I314M 0.17 deleterious(0.02) benign(0.424) TCGA-UF-A7JH-01 19 54313275 54313275 G A NLRP12 Silent p.T546T 0.25 TCGA-UF-A7JH-01 19 8503446 8503446 G C MARCH2 3'UTR 0.24 TCGA-UF-A7JH-01 1 100177977 100177977 G A FRRS1 Missense_Mutation p.P473L 0.44 tolerated(0.06) benign(0.16) TCGA-UF-A7JH-01 1 109241984 109241984 G A PRPF38B Missense_Mutation p.R328K 0.06 tolerated(0.24) unknown(0) TCGA-UF-A7JH-01 1 156020253 156020253 C T UBQLN4 Missense_Mutation p.M190I 0.36 tolerated(0.11) benign(0.269) TCGA-UF-A7JH-01 1 161012652 161012652 G A USF1 Missense_Mutation p.T10M 0.15 deleterious_low_confidence(0.05) benign(0.295) TCGA-UF-A7JH-01 1 161047418 161047418 C A PVRL4 Silent p.T185T 0.45 TCGA-UF-A7JH-01 1 216850525 216850525 G T ESRRG Nonsense_Mutation p.S127* 0.43 TCGA-UF-A7JH-01 1 71544350 71544350 C T ZRANB2 Missense_Mutation p.R33Q 0.16 deleterious(0.02) possibly_damaging(0.671) TCGA-UF-A7JH-01 1 98157320 98157320 C T DPYD Missense_Mutation p.D239N 0.21 tolerated(0.08) benign(0.002) TCGA-UF-A7JH-01 20 42694468 42694468 G A TOX2 Silent p.S359S 0.26 TCGA-UF-A7JH-01 20 49626377 49626377 G A KCNG1 Missense_Mutation p.R167C 0.07 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JH-01 21 38117419 38117419 C T SIM2 Silent p.L520L 0.44 TCGA-UF-A7JH-01 21 45948375 45948375 C T TSPEAR Silent p.L294L 0.35 TCGA-UF-A7JH-01 22 17072280 17072280 A T CCT8L2 Missense_Mutation p.S387R 0.40 tolerated(0.08) benign(0.01) TCGA-UF-A7JH-01 22 24122901 24122901 G A MMP11 Silent p.Q205Q 0.29 TCGA-UF-A7JH-01 2 106509549 106509549 G C NCK2 Missense_Mutation p.E354Q 0.22 tolerated(0.53) probably_damaging(0.999) TCGA-UF-A7JH-01 2 113404993 113404993 G A SLC20A1 Missense_Mutation p.V143M 0.46 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JH-01 2 131487510 131487510 C A GPR148 Silent p.T262T 0.24 TCGA-UF-A7JH-01 2 136570264 136570264 G C LCT Missense_Mutation p.S657C 0.16 deleterious(0.02) possibly_damaging(0.656) TCGA-UF-A7JH-01 2 155711567 155711567 C A KCNJ3 Silent p.L416L 0.52 TCGA-UF-A7JH-01 2 165953013 165953013 C T SCN3A Nonsense_Mutation p.W1419* 0.24 TCGA-UF-A7JH-01 2 165953014 165953014 C G SCN3A Missense_Mutation p.W1419S 0.24 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JH-01 2 166848051 166848051 G A SCN1A Nonsense_Mutation p.R1912* 0.49 TCGA-UF-A7JH-01 2 190595232 190595232 A T ANKAR Missense_Mutation p.T1069S 0.14 tolerated(0.55) possibly_damaging(0.642) TCGA-UF-A7JH-01 2 242689679 242689679 C T D2HGDH Missense_Mutation p.R323C 0.18 deleterious(0.01) benign(0.035) TCGA-UF-A7JH-01 2 67631109 67631109 C T ETAA1 Missense_Mutation p.T432I 0.25 tolerated(0.29) benign(0.037) TCGA-UF-A7JH-01 3 185978226 185978226 A T DGKG Splice_Site p.X475_splice 0.35 TCGA-UF-A7JH-01 4 25395956 25395956 C A ANAPC4 Missense_Mutation p.Q301K 0.54 tolerated(0.07) possibly_damaging(0.817) TCGA-UF-A7JH-01 5 110096948 110096948 A C SLC25A46 Missense_Mutation p.K241N 0.56 deleterious(0.01) benign(0.303) TCGA-UF-A7JH-01 5 128302064 128302064 C T SLC27A6 Silent p.D78D 0.67 TCGA-UF-A7JH-01 5 79032122 79032122 G T CMYA5 Missense_Mutation p.A2512S 0.62 possibly_damaging(0.757) TCGA-UF-A7JH-01 6 1390682 1390682 G T FOXF2 Missense_Mutation p.R167L 0.07 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JH-01 6 144835885 144835885 C A UTRN Missense_Mutation p.L1725I 0.60 tolerated(0.09) probably_damaging(0.999) TCGA-UF-A7JH-01 6 154412543 154412543 G A OPRM1 Missense_Mutation p.R460Q 0.48 deleterious(0.03) possibly_damaging(0.761) TCGA-UF-A7JH-01 6 46677139 46677139 T C PLA2G7 Missense_Mutation p.E265G 0.26 tolerated(0.11) benign(0.062) TCGA-UF-A7JH-01 7 117230489 117230489 G T CFTR Nonsense_Mutation p.E588* 0.10 TCGA-UF-A7JH-01 7 134849719 134849719 G A TMEM140 Missense_Mutation p.E176K 0.28 tolerated(0.94) benign(0.003) TCGA-UF-A7JH-01 7 142131665 142131665 C A TRBV5-6 Silent p.L30L 0.31 TCGA-UF-A7JH-01 7 142654951 142654951 C A KEL Missense_Mutation p.G212V 0.23 tolerated(0.05) possibly_damaging(0.71) TCGA-UF-A7JH-01 7 149509413 149509413 G A SSPO RNA 0.57 TCGA-UF-A7JH-01 7 155503997 155503997 C T RBM33 Missense_Mutation p.P350L 0.34 tolerated(0.93) possibly_damaging(0.859) TCGA-UF-A7JH-01 7 66420549 66420549 C T TMEM248 3'UTR 0.43 TCGA-UF-A7JH-01 8 23243467 23243467 G A LOXL2 Intron 0.16 TCGA-UF-A7JH-01 8 28625497 28625497 G T INTS9 3'UTR 0.30 TCGA-UF-A7JH-01 8 62577965 62577965 T C ASPH Intron 0.36 TCGA-UF-A7JH-01 9 115013271 115013271 C A PTBP3 Missense_Mutation p.R281L 0.37 deleterious(0.01) benign(0.283) TCGA-UF-A7JH-01 9 91993589 91993589 C T SEMA4D 3'UTR 0.14 TCGA-UF-A7JH-01 X 120008940 120008940 C T CT47B1 Silent p.S195S 0.75 TCGA-UF-A7JH-01 X 136113733 136113733 C T GPR101 Missense_Mutation p.R34H 0.72 deleterious(0) probably_damaging(0.996) TCGA-UF-A7JH-01 X 34149866 34149866 G T FAM47A Missense_Mutation p.T177N 0.43 deleterious(0.02) probably_damaging(0.985) TCGA-UF-A7JH-01 X 88009340 88009340 C A CPXCR1 3'UTR 0.71 TCGA-UF-A7JJ-01 10 72489903 72489903 C A ADAMTS14 Missense_Mutation p.Q334K 0.13 deleterious(0.03) possibly_damaging(0.882) TCGA-UF-A7JJ-01 10 94675516 94675516 C T EXOC6 Missense_Mutation p.A222V 0.15 tolerated(0.23) benign(0.002) TCGA-UF-A7JJ-01 11 100126556 100126556 C A CNTN5 Silent p.S690S 0.14 TCGA-UF-A7JJ-01 11 102825259 102825259 C T MMP13 Missense_Mutation p.D147N 0.06 tolerated(0.68) benign(0.02) TCGA-UF-A7JJ-01 11 118888251 118888251 C T RPS25 Nonsense_Mutation p.W35* 0.14 TCGA-UF-A7JJ-01 11 124507096 124507096 G C SIAE Missense_Mutation p.I441M 0.10 deleterious(0) possibly_damaging(0.541) TCGA-UF-A7JJ-01 11 124670231 124670231 T A MSANTD2 Nonsense_Mutation p.K16* 0.12 TCGA-UF-A7JJ-01 11 45880359 45880359 G A CRY2 Silent p.K155K 0.07 TCGA-UF-A7JJ-01 11 55036772 55036772 A C TRIM48 Silent p.A211A 0.10 TCGA-UF-A7JJ-01 11 5509965 5509965 A G OR52D1 Missense_Mutation p.H10R 0.11 tolerated(0.06) benign(0) TCGA-UF-A7JJ-01 11 62592568 62592568 G A STX5 Missense_Mutation p.R207W 0.11 deleterious(0) probably_damaging(1) TCGA-UF-A7JJ-01 11 6942471 6942471 G C OR2D3 Missense_Mutation p.R80T 0.05 tolerated(0.96) benign(0.004) TCGA-UF-A7JJ-01 11 76893069 76893069 G C MYO7A Missense_Mutation p.E993Q 0.11 tolerated(0.12) benign(0.23) TCGA-UF-A7JJ-01 12 57598229 57598229 A G LRP1 Missense_Mutation p.N3663S 0.13 probably_damaging(0.998) TCGA-UF-A7JJ-01 12 58002418 58002418 G A DTX3 Missense_Mutation p.R289H 0.13 deleterious(0) possibly_damaging(0.475) TCGA-UF-A7JJ-01 12 86373732 86373732 C A MGAT4C Missense_Mutation p.G258C 0.06 deleterious(0) probably_damaging(1) TCGA-UF-A7JJ-01 13 102220053 102220053 A T ITGBL1 Missense_Mutation p.H107L 0.06 deleterious(0) possibly_damaging(0.665) TCGA-UF-A7JJ-01 13 19751433 19751433 C G TUBA3C Silent p.L230L 0.07 TCGA-UF-A7JJ-01 14 59942889 59942889 T C L3HYPDH Missense_Mutation p.Y241C 0.09 deleterious(0.03) probably_damaging(1) TCGA-UF-A7JJ-01 14 73538409 73538409 G T RBM25 Silent p.G20G 0.05 TCGA-UF-A7JJ-01 14 88892747 88892747 A G SPATA7 Missense_Mutation p.S182G 0.12 deleterious(0.03) benign(0.02) TCGA-UF-A7JJ-01 15 49148244 49148244 G A SHC4 Missense_Mutation p.P383L 0.07 deleterious(0.02) benign(0.132) TCGA-UF-A7JJ-01 15 88423650 88423650 G T NTRK3 Missense_Mutation p.H729N 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-UF-A7JJ-01 15 96875608 96875608 G T NR2F2 Missense_Mutation p.G92C 0.21 deleterious(0) probably_damaging(1) TCGA-UF-A7JJ-01 16 20327363 20327363 C A GP2 Splice_Site p.X476_splice 0.08 TCGA-UF-A7JJ-01 16 24104219 24104219 A G PRKCB Missense_Mutation p.K213E 0.04 tolerated(0.07) benign(0.105) TCGA-UF-A7JJ-01 16 30667506 30667506 G T PRR14 Missense_Mutation p.R544S 0.04 deleterious(0.04) probably_damaging(0.99) TCGA-UF-A7JJ-01 16 3779596 3779596 C A CREBBP Missense_Mutation p.V1818L 0.09 unknown(0) TCGA-UF-A7JJ-01 16 49671871 49671871 G T ZNF423 Silent p.R398R 0.10 TCGA-UF-A7JJ-01 16 76461448 76461448 C A CNTNAP4 Missense_Mutation p.P139T 0.11 deleterious(0.01) possibly_damaging(0.904) TCGA-UF-A7JJ-01 17 56540312 56540312 G C HSF5 Missense_Mutation p.P458R 0.03 deleterious(0.01) possibly_damaging(0.572) TCGA-UF-A7JJ-01 17 6441364 6441364 G C PITPNM3 Missense_Mutation p.R21G 0.38 deleterious(0) benign(0.156) TCGA-UF-A7JJ-01 17 7099579 7099579 C A DLG4 Missense_Mutation p.A464S 0.08 tolerated(0.1) possibly_damaging(0.729) TCGA-UF-A7JJ-01 17 7214723 7214723 C T EIF5A Nonsense_Mutation p.R139* 0.16 TCGA-UF-A7JJ-01 17 7579470 7579471 - G TP53 Frame_Shift_Ins p.V73Rfs*76 0.21 TCGA-UF-A7JJ-01 18 117158 117158 A G ROCK1P1 RNA 0.13 TCGA-UF-A7JJ-01 18 5416179 5416179 G A EPB41L3 Nonsense_Mutation p.Q569* 0.05 TCGA-UF-A7JJ-01 18 6215775 6215775 C T L3MBTL4 Missense_Mutation p.A282T 0.09 tolerated(0.05) benign(0.01) TCGA-UF-A7JJ-01 18 8638229 8638229 C T RAB12 Missense_Mutation p.P235L 0.07 deleterious(0.01) benign(0.04) TCGA-UF-A7JJ-01 19 41133153 41133153 A T LTBP4 Missense_Mutation p.E1486V 0.20 tolerated(0.12) possibly_damaging(0.857) TCGA-UF-A7JJ-01 19 53208929 53208929 T A ZNF611 Missense_Mutation p.D460V 0.15 deleterious(0.02) possibly_damaging(0.765) TCGA-UF-A7JJ-01 1 101705578 101705578 C T S1PR1 Silent p.A346A 0.06 TCGA-UF-A7JJ-01 1 150550932 150550932 C G MCL1 Missense_Mutation p.D242H 0.08 deleterious(0) probably_damaging(0.993) TCGA-UF-A7JJ-01 1 156047275 156047275 G A MEX3A Missense_Mutation p.P218L 0.14 deleterious(0.02) probably_damaging(0.941) TCGA-UF-A7JJ-01 1 159175698 159175698 C A DARC Missense_Mutation p.L159M 0.09 tolerated(0.13) probably_damaging(0.977) TCGA-UF-A7JJ-01 1 179609542 179609542 G T TDRD5 Missense_Mutation p.A588S 0.04 deleterious(0) probably_damaging(1) TCGA-UF-A7JJ-01 1 19420579 19420579 T C UBR4 Missense_Mutation p.I4601V 0.16 possibly_damaging(0.768) TCGA-UF-A7JJ-01 1 70504623 70504623 C T LRRC7 Missense_Mutation p.P1001L 0.06 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JJ-01 1 77763264 77763264 G A AK5 Missense_Mutation p.G146S 0.07 deleterious(0.01) probably_damaging(1) TCGA-UF-A7JJ-01 21 34922188 34922188 A G SON Silent p.V217V 0.08 TCGA-UF-A7JJ-01 22 21351028 21351028 C T LZTR1 Missense_Mutation p.R755W 0.17 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JJ-01 22 36688050 36688051 CT G MYH9 Frame_Shift_Del p.K1442Tfs*69 0.18 TCGA-UF-A7JJ-01 2 132912254 132912254 C A ANKRD30BL Missense_Mutation p.A199S 0.12 deleterious(0.02) possibly_damaging(0.733) TCGA-UF-A7JJ-01 2 141459330 141459330 G T LRP1B Missense_Mutation p.N2129K 0.08 benign(0.403) TCGA-UF-A7JJ-01 2 168103427 168103427 C A XIRP2 Missense_Mutation p.T1842K 0.10 benign(0) TCGA-UF-A7JJ-01 2 178083789 178083789 A C HNRNPA3 Missense_Mutation p.Y329S 0.31 tolerated(0.11) unknown(0) TCGA-UF-A7JJ-01 2 180008414 180008414 C A SESTD1 Missense_Mutation p.D252Y 0.08 deleterious(0) probably_damaging(0.921) TCGA-UF-A7JJ-01 2 207041566 207041566 A T GPR1 Missense_Mutation p.Y136N 0.06 deleterious(0) probably_damaging(0.993) TCGA-UF-A7JJ-01 2 242128075 242128075 C T ANO7 Missense_Mutation p.P17S 0.09 deleterious_low_confidence(0) benign(0.118) TCGA-UF-A7JJ-01 2 79350329 79350329 G A REG1A Silent p.K163K 0.06 TCGA-UF-A7JJ-01 3 164906037 164906037 C A SLITRK3 Missense_Mutation p.R861L 0.06 tolerated_low_confidence(0.47) benign(0.02) TCGA-UF-A7JJ-01 3 169496709 169496709 A G MYNN Silent p.Q140Q 0.08 TCGA-UF-A7JJ-01 3 169540081 169540081 G A LRRIQ4 Silent p.R124R 0.11 TCGA-UF-A7JJ-01 4 126372252 126372252 C A FAT4 Missense_Mutation p.L3361I 0.07 probably_damaging(0.999) TCGA-UF-A7JJ-01 4 187542175 187542196 TGGGGTTCCCATGTCATGCACT - FAT1 Frame_Shift_Del p.Q1848Hfs*11 0.19 TCGA-UF-A7JJ-01 4 25005442 25005442 C T LGI2 Silent p.V423V 0.05 TCGA-UF-A7JJ-01 4 46305631 46305631 T G GABRA2 Splice_Site p.X235_splice 0.07 TCGA-UF-A7JJ-01 5 112174647 112174647 A G APC Missense_Mutation p.H1119R 0.09 benign(0.397) TCGA-UF-A7JJ-01 5 123982540 123982540 C T ZNF608 Silent p.E1179E 0.04 TCGA-UF-A7JJ-01 5 130987629 130987629 T A FNIP1 Missense_Mutation p.T1058S 0.08 tolerated(0.74) probably_damaging(0.995) TCGA-UF-A7JJ-01 5 130987631 130987631 C A FNIP1 Missense_Mutation p.W1057L 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-UF-A7JJ-01 5 140683125 140683125 T G SLC25A2 Missense_Mutation p.K103T 0.06 tolerated(0.11) benign(0.102) TCGA-UF-A7JJ-01 5 23509628 23509628 G T PRDM9 Missense_Mutation p.W40L 0.06 deleterious_low_confidence(0.04) benign(0.185) TCGA-UF-A7JJ-01 5 33461032 33461032 T C TARS Missense_Mutation p.S459P 0.06 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JJ-01 5 94939042 94939042 A C ARSK Missense_Mutation p.K475Q 0.11 tolerated(0.29) benign(0.006) TCGA-UF-A7JJ-01 6 128306869 128306869 C T PTPRK Missense_Mutation p.C1089Y 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-UF-A7JJ-01 6 130497046 130497046 G T SAMD3 Silent p.G254G 0.03 TCGA-UF-A7JJ-01 6 29523954 29523954 G T UBD Silent p.G67G 0.13 TCGA-UF-A7JJ-01 6 29912156 29912156 C A HLA-A Missense_Mutation p.P293T 0.11 deleterious_low_confidence(0.01) benign(0.013) TCGA-UF-A7JJ-01 6 7230237 7230237 G A RREB1 Silent p.T635T 0.16 TCGA-UF-A7JJ-01 6 97246676 97246676 C A GPR63 Missense_Mutation p.R311L 0.09 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JJ-01 7 122755642 122755642 A T SLC13A1 Missense_Mutation p.I573N 0.10 deleterious(0.01) benign(0.278) TCGA-UF-A7JJ-01 7 135328051 135328051 A T NUP205 Missense_Mutation p.Q1835L 0.11 deleterious(0.01) benign(0.062) TCGA-UF-A7JJ-01 7 144098481 144098481 G T NOBOX Missense_Mutation p.H168N 0.08 tolerated(0.05) possibly_damaging(0.663) TCGA-UF-A7JJ-01 7 148451163 148451163 G A CUL1 Missense_Mutation p.G79E 0.15 tolerated(0.42) benign(0.072) TCGA-UF-A7JJ-01 7 82584423 82584423 C A PCLO Missense_Mutation p.G1949V 0.05 unknown(0) TCGA-UF-A7JJ-01 7 94038707 94038707 G T COL1A2 Missense_Mutation p.G289V 0.09 unknown(0) TCGA-UF-A7JJ-01 8 101718959 101718959 C A PABPC1 Missense_Mutation p.V508F 0.09 tolerated(0.39) benign(0.27) TCGA-UF-A7JJ-01 8 104419870 104419870 G T SLC25A32 Nonsense_Mutation p.Y99* 0.09 TCGA-UF-A7JJ-01 8 132052065 132052065 C A ADCY8 Missense_Mutation p.R172L 0.16 tolerated(0.13) benign(0.008) TCGA-UF-A7JJ-01 8 3216729 3216729 A G CSMD1 Silent p.L1083L 0.11 TCGA-UF-A7JJ-01 9 17330664 17330664 C T CNTLN Missense_Mutation p.T459M 0.06 tolerated(0.08) possibly_damaging(0.853) TCGA-UF-A7JJ-01 X 101381930 101381930 A G TCEAL2 Missense_Mutation p.N43S 0.14 tolerated(0.09) possibly_damaging(0.621) TCGA-UF-A7JJ-01 X 142795238 142795238 G A SPANXN2 Missense_Mutation p.S147F 0.13 tolerated(0.22) unknown(0) TCGA-UF-A7JJ-01 X 153184449 153184449 G T ARHGAP4 Missense_Mutation p.A330D 0.13 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JJ-01 X 53171997 53171997 G A LINC01155 RNA 0.21 TCGA-UF-A7JJ-01 X 70824046 70824046 G C ACRC Missense_Mutation p.D307H 0.04 unknown(0) TCGA-UF-A7JJ-01 X 84363320 84363320 T A SATL1 Missense_Mutation p.S219C 0.11 tolerated(0.09) possibly_damaging(0.843) TCGA-UF-A7JK-01 10 102732925 102732925 A T SEMA4G Missense_Mutation p.N55I 0.23 deleterious(0) probably_damaging(0.988) TCGA-UF-A7JK-01 10 104119951 104119951 G T GBF1 Missense_Mutation p.L396F 0.24 tolerated(0.06) possibly_damaging(0.786) TCGA-UF-A7JK-01 10 105362799 105362799 C T SH3PXD2A Missense_Mutation p.A698T 0.18 tolerated_low_confidence(0.17) possibly_damaging(0.715) TCGA-UF-A7JK-01 10 13522936 13522936 C T BEND7 Silent p.R290R 0.17 TCGA-UF-A7JK-01 10 14563887 14563887 C T FAM107B Missense_Mutation p.R262Q 0.16 deleterious(0.02) probably_damaging(0.963) TCGA-UF-A7JK-01 10 33015677 33015677 C A C10ORF68 Missense_Mutation p.S169Y 0.20 tolerated(0.69) possibly_damaging(0.466) TCGA-UF-A7JK-01 10 93744029 93744029 C T BTAF1 Silent p.D765D 0.29 TCGA-UF-A7JK-01 11 102736639 102736639 A C MMP12 RNA 0.21 TCGA-UF-A7JK-01 11 114392651 114392651 A C NXPE1 3'UTR 0.17 TCGA-UF-A7JK-01 11 64521044 64521044 C T PYGM Silent p.S450S 0.21 TCGA-UF-A7JK-01 11 6898608 6898608 G A OR10A4 Missense_Mutation p.A244T 0.29 deleterious(0) benign(0.009) TCGA-UF-A7JK-01 11 8122379 8122379 G A TUB Missense_Mutation p.E463K 0.26 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JK-01 11 96117453 96117453 T C CCDC82 Silent p.L153L 0.18 TCGA-UF-A7JK-01 12 121125273 121125273 G T MLEC Silent p.A58A 0.50 TCGA-UF-A7JK-01 12 18891831 18891831 A G CAPZA3 Missense_Mutation p.K210R 0.17 tolerated(0.23) possibly_damaging(0.474) TCGA-UF-A7JK-01 12 2783763 2783763 C T CACNA1C Missense_Mutation p.R1643W 0.15 deleterious(0) probably_damaging(0.996) TCGA-UF-A7JK-01 12 32996151 32996151 G C PKP2 Missense_Mutation p.T492R 0.54 tolerated_low_confidence(0.68) benign(0) TCGA-UF-A7JK-01 12 94654553 94654553 G A PLXNC1 Silent p.T1129T 0.24 TCGA-UF-A7JK-01 13 100637229 100637229 G A ZIC2 Missense_Mutation p.G369S 0.33 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JK-01 13 103249403 103249403 G A TPP2 Silent p.A5A 0.32 TCGA-UF-A7JK-01 13 31713028 31713028 T A HSPH1 Missense_Mutation p.T700S 0.55 tolerated(0.19) benign(0.034) TCGA-UF-A7JK-01 13 32912648 32912648 G A BRCA2 Missense_Mutation p.D1386N 0.27 deleterious(0) probably_damaging(1) TCGA-UF-A7JK-01 13 61986505 61986505 G T PCDH20 Missense_Mutation p.P576H 0.14 tolerated(0.24) benign(0.012) TCGA-UF-A7JK-01 13 66878638 66878638 A C PCDH9 3'UTR 0.58 TCGA-UF-A7JK-01 13 86368994 86368994 C T SLITRK6 Silent p.G550G 0.05 TCGA-UF-A7JK-01 14 105615349 105615349 G A JAG2 Missense_Mutation p.R611C 0.30 deleterious(0) benign(0.416) TCGA-UF-A7JK-01 14 24592244 24592244 C T DCAF11 Silent p.D488D 0.16 TCGA-UF-A7JK-01 14 70634203 70634203 G A SLC8A3 Missense_Mutation p.R313C 0.31 deleterious(0.02) probably_damaging(0.983) TCGA-UF-A7JK-01 14 92908448 92908448 G A SLC24A4 Missense_Mutation p.E137K 0.17 deleterious(0.01) possibly_damaging(0.786) TCGA-UF-A7JK-01 15 23437934 23437934 A G GOLGA8EP RNA 0.28 TCGA-UF-A7JK-01 15 25446507 25446507 G C SNORD115-17 RNA 0.16 TCGA-UF-A7JK-01 15 26812851 26812851 G A GABRB3 Missense_Mutation p.R238W 0.14 tolerated(0.08) probably_damaging(0.916) TCGA-UF-A7JK-01 15 28326985 28326985 G A OCA2 Silent p.P12P 0.11 TCGA-UF-A7JK-01 15 58889782 58889782 G A ADAM10 Silent p.P737P 0.40 TCGA-UF-A7JK-01 15 74536343 74536343 G A CCDC33 Silent p.E13E 0.21 TCGA-UF-A7JK-01 15 83451772 83451772 A G FSD2 Silent p.N247N 0.68 TCGA-UF-A7JK-01 15 90021122 90021122 G T RHCG Silent p.L307L 0.18 TCGA-UF-A7JK-01 16 27353504 27353504 G T IL4R Nonsense_Mutation p.E45* 0.32 TCGA-UF-A7JK-01 16 29096044 29096044 T C RRN3P2 RNA 0.21 TCGA-UF-A7JK-01 16 50102745 50102745 T C HEATR3 Silent p.D122D 0.21 TCGA-UF-A7JK-01 16 66957606 66957606 C A RRAD Missense_Mutation p.L154F 0.17 tolerated(0.22) probably_damaging(0.981) TCGA-UF-A7JK-01 16 68056207 68056207 A T DDX28 Missense_Mutation p.V300E 0.21 deleterious(0) possibly_damaging(0.882) TCGA-UF-A7JK-01 17 10247330 10247330 T C MYH13 Missense_Mutation p.K561E 0.70 deleterious(0) probably_damaging(0.991) TCGA-UF-A7JK-01 17 10399294 10399294 A G MYH1 Silent p.S1714S 0.24 TCGA-UF-A7JK-01 17 10404677 10404677 G T MYH1 Missense_Mutation p.A1163D 0.16 deleterious(0) possibly_damaging(0.717) TCGA-UF-A7JK-01 17 19284199 19284199 G A MAPK7 Nonsense_Mutation p.W226* 0.11 TCGA-UF-A7JK-01 17 40091513 40091513 G T TTC25 RNA 0.17 TCGA-UF-A7JK-01 17 40272335 40272335 G A KAT2A Silent p.L173L 0.24 TCGA-UF-A7JK-01 17 44845707 44845707 G A WNT3 Silent p.Y349Y 0.22 TCGA-UF-A7JK-01 17 73498857 73498857 C T CASKIN2 Silent p.P766P 0.35 TCGA-UF-A7JK-01 17 7578231 7578245 CAAATACTCCACACG - TP53 In_Frame_Del p.R202_L206del 0.67 TCGA-UF-A7JK-01 19 1004615 1004615 G T GRIN3B Missense_Mutation p.S372I 0.27 deleterious(0) possibly_damaging(0.786) TCGA-UF-A7JK-01 19 10668543 10668543 G A KRI1 Missense_Mutation p.P469L 0.22 tolerated(0.1) benign(0.006) TCGA-UF-A7JK-01 19 1619317 1619317 G A TCF3 Silent p.L442L 0.50 TCGA-UF-A7JK-01 19 3207443 3207443 C T NCLN Silent p.L536L 0.34 TCGA-UF-A7JK-01 19 35655077 35655077 C T FXYD5 Missense_Mutation p.T104I 0.25 deleterious(0.04) possibly_damaging(0.908) TCGA-UF-A7JK-01 19 45206848 45206848 C T CEACAM16 Silent p.P89P 0.66 TCGA-UF-A7JK-01 19 57175877 57175877 C T ZNF835 Silent p.A230A 0.28 TCGA-UF-A7JK-01 19 5772958 5772958 C T CATSPERD Silent p.P641P 0.29 TCGA-UF-A7JK-01 1 114680204 114680204 A G SYT6 Silent p.I243I 0.37 TCGA-UF-A7JK-01 1 117297443 117297443 T A CD2 Nonsense_Mutation p.Y84* 0.34 TCGA-UF-A7JK-01 1 12919923 12919923 A T PRAMEF2 Silent p.I221I 0.20 TCGA-UF-A7JK-01 1 151337669 151337669 A G SELENBP1 Missense_Mutation p.V378A 0.14 deleterious(0) benign(0.257) TCGA-UF-A7JK-01 1 155020374 155020374 G A DCST1 Missense_Mutation p.R575Q 0.18 deleterious(0) probably_damaging(0.979) TCGA-UF-A7JK-01 1 155234038 155234038 G A CLK2 Silent p.I399I 0.17 TCGA-UF-A7JK-01 1 167097175 167097175 A T DUSP27 Missense_Mutation p.N936I 0.36 deleterious(0) benign(0.169) TCGA-UF-A7JK-01 1 169599379 169599379 C - SELP 5'Flank 0.18 TCGA-UF-A7JK-01 1 17272863 17272863 C T CROCC Missense_Mutation p.A749V 0.21 possibly_damaging(0.821) TCGA-UF-A7JK-01 1 176934360 176934360 T C ASTN1 Missense_Mutation p.T513A 0.21 tolerated_low_confidence(0.1) probably_damaging(0.99) TCGA-UF-A7JK-01 1 183944297 183944297 G C COLGALT2 Silent p.A142A 0.11 TCGA-UF-A7JK-01 1 202913030 202913030 C A ADIPOR1 Missense_Mutation p.V221F 0.18 deleterious(0) probably_damaging(0.978) TCGA-UF-A7JK-01 1 205548961 205548961 G A MFSD4 Missense_Mutation p.V105M 0.24 deleterious(0) probably_damaging(0.995) TCGA-UF-A7JK-01 1 211093339 211093339 C T KCNH1 Missense_Mutation p.D369N 0.20 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JK-01 1 245530315 245530315 C G KIF26B Missense_Mutation p.D215E 0.31 deleterious(0.03) unknown(0) TCGA-UF-A7JK-01 1 38185713 38185713 C T EPHA10 Silent p.A810A 0.18 TCGA-UF-A7JK-01 1 906558 906558 G A PLEKHN1 Silent p.S226S 0.73 TCGA-UF-A7JK-01 20 31975138 31975138 G T CDK5RAP1 Missense_Mutation p.S249Y 0.38 deleterious(0) probably_damaging(0.986) TCGA-UF-A7JK-01 20 33680571 33680571 G A TRPC4AP Missense_Mutation p.P5L 0.42 deleterious_low_confidence(0) unknown(0) TCGA-UF-A7JK-01 20 37357241 37357241 G A SLC32A1 Missense_Mutation p.E513K 0.13 tolerated(1) benign(0.019) TCGA-UF-A7JK-01 20 3897632 3897632 A T PANK2 Nonsense_Mutation p.R491* 0.33 TCGA-UF-A7JK-01 20 44352533 44352533 G A SPINT4 Missense_Mutation p.D44N 0.15 tolerated(0.09) benign(0.244) TCGA-UF-A7JK-01 20 6065882 6065882 T C FERMT1 Missense_Mutation p.K475R 0.15 tolerated(0.46) benign(0.398) TCGA-UF-A7JK-01 21 34841096 34841096 A G TMEM50B Silent p.L33L 0.31 TCGA-UF-A7JK-01 22 31741062 31741062 C T PATZ1 Missense_Mutation p.R176H 0.24 deleterious_low_confidence(0.01) benign(0.067) TCGA-UF-A7JK-01 2 101627475 101627475 A T TBC1D8 Missense_Mutation p.D962E 0.21 tolerated(0.11) possibly_damaging(0.752) TCGA-UF-A7JK-01 2 103142788 103142788 G T SLC9A4 Missense_Mutation p.R674M 0.21 deleterious(0.03) possibly_damaging(0.471) TCGA-UF-A7JK-01 2 107446571 107446571 C T ST6GAL2 Silent p.E423E 0.25 TCGA-UF-A7JK-01 2 107460189 107460189 C T ST6GAL2 Missense_Mutation p.R82H 0.27 benign(0.003) TCGA-UF-A7JK-01 2 11725952 11725952 A T GREB1 Silent p.P360P 0.32 TCGA-UF-A7JK-01 2 128186041 128186041 T G PROC Missense_Mutation p.L302R 0.21 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JK-01 2 131487215 131487215 C A GPR148 Missense_Mutation p.A164D 0.19 deleterious(0.02) possibly_damaging(0.494) TCGA-UF-A7JK-01 2 162242001 162242001 C A PSMD14 Silent p.I163I 0.38 TCGA-UF-A7JK-01 2 170066058 170066058 C T LRP2 Missense_Mutation p.R2125H 0.17 benign(0.021) TCGA-UF-A7JK-01 2 179456494 179456494 C T TTN Missense_Mutation p.E20018K 0.50 TCGA-UF-A7JK-01 2 202082352 202082352 A T CASP10 Missense_Mutation p.D486V 0.18 deleterious(0) probably_damaging(0.994) TCGA-UF-A7JK-01 2 203329550 203329550 G A BMPR2 Missense_Mutation p.R32Q 0.51 deleterious(0.01) possibly_damaging(0.698) TCGA-UF-A7JK-01 2 21252782 21252782 A G APOB Silent p.Y486Y 0.34 TCGA-UF-A7JK-01 2 3660936 3660936 G A COLEC11 Missense_Mutation p.G70R 0.14 deleterious(0) probably_damaging(1) TCGA-UF-A7JK-01 2 76975752 76975752 C A LRRTM4 3'UTR 0.42 TCGA-UF-A7JK-01 2 99681511 99681511 C T TSGA10 Missense_Mutation p.R432H 0.23 tolerated(1) benign(0.004) TCGA-UF-A7JK-01 3 122334541 122334541 T A PARP15 Intron 0.22 TCGA-UF-A7JK-01 3 123383038 123383038 G A MYLK Missense_Mutation p.A1300V 0.42 tolerated(0.05) possibly_damaging(0.491) TCGA-UF-A7JK-01 3 132180004 132180004 G A DNAJC13 Silent p.L556L 0.31 TCGA-UF-A7JK-01 3 173998438 173998438 G T NLGN1 Missense_Mutation p.W606L 0.24 deleterious(0) probably_damaging(0.995) TCGA-UF-A7JK-01 3 194947506 194947506 C G XXYLT1 Missense_Mutation p.G195A 0.13 tolerated(0.09) possibly_damaging(0.905) TCGA-UF-A7JK-01 3 47287699 47287699 C A KIF9 Missense_Mutation p.R426L 0.18 deleterious(0) benign(0.297) TCGA-UF-A7JK-01 3 7620568 7620568 C T GRM7 Nonsense_Mutation p.R659* 0.22 TCGA-UF-A7JK-01 3 9754511 9754511 A G CPNE9 Missense_Mutation p.T182A 0.33 deleterious(0.02) possibly_damaging(0.578) TCGA-UF-A7JK-01 4 152065407 152065407 T C SH3D19 Missense_Mutation p.I426V 0.22 tolerated(0.52) benign(0.02) TCGA-UF-A7JK-01 4 155487770 155487770 C T FGB Nonsense_Mutation p.Q146* 0.32 TCGA-UF-A7JK-01 4 23815564 23815564 G A PPARGC1A Silent p.S514S 0.20 TCGA-UF-A7JK-01 4 264686 264686 G A ZNF732 3'UTR 0.24 TCGA-UF-A7JK-01 4 59431 59431 A T ZNF595 Missense_Mutation p.R38W 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UF-A7JK-01 4 8407729 8407729 C T ACOX3 Missense_Mutation p.M243I 0.17 tolerated(0.31) benign(0.002) TCGA-UF-A7JK-01 5 140236826 140236826 C A PCDHA10 Missense_Mutation p.S398Y 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-UF-A7JK-01 5 169689739 169689739 C A LCP2 Missense_Mutation p.G276W 0.43 deleterious(0) probably_damaging(0.974) TCGA-UF-A7JK-01 5 40959707 40959707 A T C7 Missense_Mutation p.E549V 0.43 deleterious(0) probably_damaging(0.962) TCGA-UF-A7JK-01 5 90106618 90106618 G C GPR98 Missense_Mutation p.E5181Q 0.55 benign(0.016) TCGA-UF-A7JK-01 6 111697739 111697739 C T REV3L Missense_Mutation p.E607K 0.28 deleterious(0.04) possibly_damaging(0.493) TCGA-UF-A7JK-01 6 12296207 12296207 G A EDN1 Missense_Mutation p.M182I 0.52 tolerated(1) benign(0) TCGA-UF-A7JK-01 6 31118256 31118256 C T CCHCR1 Silent p.L396L 0.14 TCGA-UF-A7JK-01 6 31691724 31691724 G C C6orf25 Missense_Mutation p.G124R 0.12 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-UF-A7JK-01 6 34804007 34804007 C A UHRF1BP1 Missense_Mutation p.S305R 0.35 tolerated(0.09) benign(0.005) TCGA-UF-A7JK-01 6 51897826 51897826 A C PKHD1 Splice_Site p.X1122_splice 0.23 TCGA-UF-A7JK-01 7 131848963 131848963 C T PLXNA4 Missense_Mutation p.E1480K 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-UF-A7JK-01 7 27237893 27237893 C A HOXA13 Missense_Mutation p.R364L 0.20 deleterious(0) probably_damaging(1) TCGA-UF-A7JK-01 7 53103955 53103955 G A POM121L12 Nonsense_Mutation p.W197* 0.88 TCGA-UF-A7JK-01 7 77973178 77973178 C A MAGI2 Missense_Mutation p.G442V 0.21 deleterious(0) probably_damaging(1) TCGA-UF-A7JK-01 7 77973179 77973179 C A MAGI2 Missense_Mutation p.G442C 0.21 deleterious(0) probably_damaging(1) TCGA-UF-A7JK-01 7 86493656 86493656 C G GRM3 Silent p.T875T 0.29 TCGA-UF-A7JK-01 7 99461158 99461158 A G CYP3A43 Missense_Mutation p.R419G 0.32 deleterious(0) probably_damaging(1) TCGA-UF-A7JK-01 8 127568878 127568878 C T FAM84B Missense_Mutation p.E253K 0.47 deleterious(0) possibly_damaging(0.505) TCGA-UF-A7JK-01 9 132658259 132658259 C T FNBP1 Silent p.T568T 0.24 TCGA-UF-A7JK-01 9 19378704 19378704 A T RPS6 Splice_Site p.X117_splice 0.11 TCGA-UF-A7JK-01 9 35812163 35812163 G A SPAG8 5'UTR 0.33 TCGA-UF-A7JK-01 X 10084513 10084513 C T WWC3 Missense_Mutation p.R344C 0.28 deleterious(0.02) probably_damaging(0.987) TCGA-UF-A7JK-01 X 109937530 109937530 A G CHRDL1 Silent p.D213D 0.34 TCGA-UF-A7JK-01 X 136649786 136649786 G T ZIC3 Missense_Mutation p.K312N 0.76 deleterious(0) benign(0.255) TCGA-UF-A7JK-01 X 148039927 148039927 A G AFF2 Missense_Mutation p.I877V 0.81 tolerated(1) benign(0.001) TCGA-UF-A7JK-01 X 150156315 150156316 - A HMGB3 Frame_Shift_Ins p.V180Gfs*6 0.40 TCGA-UF-A7JK-01 X 55650774 55650774 C T FOXR2 Silent p.H210H 0.44 TCGA-UF-A7JK-01 X 83128916 83128916 A C CYLC1 Silent p.A400A 0.25 TCGA-UF-A7JK-01 Y 14832660 14832660 A T USP9Y Missense_Mutation p.M79L 0.48 tolerated(0.18) possibly_damaging(0.833) TCGA-UF-A7JO-01 10 103542039 103542039 G A NPM3 Missense_Mutation p.R132W 0.07 deleterious(0.02) possibly_damaging(0.767) TCGA-UF-A7JO-01 10 111988081 111988081 T C MXI1 Splice_Site p.X136_splice 0.10 TCGA-UF-A7JO-01 10 118101575 118101575 G A CCDC172 Missense_Mutation p.E104K 0.16 deleterious(0) possibly_damaging(0.722) TCGA-UF-A7JO-01 10 134563078 134563078 G T INPP5A Missense_Mutation p.V264L 0.26 tolerated(0.3) possibly_damaging(0.739) TCGA-UF-A7JO-01 10 32557892 32557892 G A EPC1 3'UTR 0.15 TCGA-UF-A7JO-01 10 50959895 50959895 C A OGDHL Missense_Mutation p.A243S 0.17 tolerated(0.21) benign(0.063) TCGA-UF-A7JO-01 10 68688010 68688010 C T LRRTM3 Missense_Mutation p.P446S 0.26 deleterious(0) probably_damaging(1) TCGA-UF-A7JO-01 10 70645099 70645099 C T STOX1 Missense_Mutation p.T516M 0.09 deleterious(0.02) possibly_damaging(0.654) TCGA-UF-A7JO-01 10 81371740 81371740 C T SFTPA1 Silent p.D68D 0.23 TCGA-UF-A7JO-01 10 88822525 88822525 G C GLUD1 Missense_Mutation p.S270C 0.11 deleterious(0) probably_damaging(0.993) TCGA-UF-A7JO-01 11 10540606 10540606 A G RNF141 Missense_Mutation p.F173L 0.09 deleterious(0.02) possibly_damaging(0.803) TCGA-UF-A7JO-01 11 105924819 105924819 C G KBTBD3 Missense_Mutation p.Q199H 0.16 tolerated(0.08) benign(0.413) TCGA-UF-A7JO-01 11 112064603 112064603 C A BCO2 Silent p.A173A 0.19 TCGA-UF-A7JO-01 11 1276645 1276645 C T MUC5B Missense_Mutation p.P5308L 0.31 unknown(0) TCGA-UF-A7JO-01 11 130748289 130748289 G A SNX19 3'UTR 0.12 TCGA-UF-A7JO-01 11 14991582 14991582 G A CALCA Silent p.L42L 0.17 TCGA-UF-A7JO-01 11 1586850 1586850 G A DUSP8 Silent p.L69L 0.14 TCGA-UF-A7JO-01 11 557947 557947 G A C11orf35 Silent p.L164L 0.19 TCGA-UF-A7JO-01 11 62677313 62677313 G C CHRM1 Silent p.L420L 0.24 TCGA-UF-A7JO-01 11 64003411 64003411 G A VEGFB Missense_Mutation p.R77H 0.24 deleterious(0) probably_damaging(1) TCGA-UF-A7JO-01 11 75715074 75715074 C G UVRAG Silent p.L284L 0.22 TCGA-UF-A7JO-01 12 103234269 103234269 C A PAH Silent p.R408R 0.17 TCGA-UF-A7JO-01 12 10374431 10374431 G C GABARAPL1 Missense_Mutation p.E112Q 0.07 deleterious(0) possibly_damaging(0.863) TCGA-UF-A7JO-01 12 110290475 110290475 G A GLTP Missense_Mutation p.T172M 0.18 tolerated(0.09) benign(0.007) TCGA-UF-A7JO-01 12 110977654 110977654 C T PPTC7 Missense_Mutation p.M233I 0.11 tolerated(0.22) benign(0.101) TCGA-UF-A7JO-01 12 121435467 121435467 C T HNF1A Silent p.H500H 0.12 TCGA-UF-A7JO-01 12 18435201 18435202 - T PIK3C2G Frame_Shift_Ins p.V65Cfs*16 0.18 TCGA-UF-A7JO-01 12 4479466 4479466 G A FGF23 3'UTR 0.20 TCGA-UF-A7JO-01 12 49993562 49993562 G A FAM186B Missense_Mutation p.R621W 0.13 tolerated(0.12) benign(0.009) TCGA-UF-A7JO-01 12 56086664 56086664 T G ITGA7 Silent p.P940P 0.24 TCGA-UF-A7JO-01 12 56648679 56648679 G A ANKRD52 Missense_Mutation p.R174W 0.33 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JO-01 12 56712917 56712917 G A PAN2 Nonsense_Mutation p.R1111* 0.33 TCGA-UF-A7JO-01 12 70004328 70004328 C G LRRC10 Missense_Mutation p.L97F 0.09 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JO-01 13 101266643 101266643 C T TMTC4 Nonsense_Mutation p.W626* 0.24 TCGA-UF-A7JO-01 13 108518288 108518288 C T FAM155A Silent p.S219S 0.20 TCGA-UF-A7JO-01 13 42877782 42877782 C T AKAP11 Missense_Mutation p.H1634Y 0.24 deleterious(0.02) possibly_damaging(0.907) TCGA-UF-A7JO-01 13 70293498 70293498 T A KLHL1 Intron 0.11 TCGA-UF-A7JO-01 14 105821444 105821444 G C PACS2 Missense_Mutation p.R118T 0.14 deleterious(0) probably_damaging(0.991) TCGA-UF-A7JO-01 14 106573465 106573465 G A IGHV3-11 Missense_Mutation p.S40F 0.18 deleterious_low_confidence(0) benign(0.404) TCGA-UF-A7JO-01 14 21460779 21460779 G A METTL17 Missense_Mutation p.E176K 0.18 deleterious(0) probably_damaging(0.985) TCGA-UF-A7JO-01 14 58831438 58831438 G A ARID4A Missense_Mutation p.M877I 0.16 tolerated_low_confidence(0.11) benign(0) TCGA-UF-A7JO-01 14 64194623 64194623 G C SGPP1 Missense_Mutation p.L14V 0.38 deleterious(0) possibly_damaging(0.878) TCGA-UF-A7JO-01 14 70926267 70926267 T C ADAM21 Missense_Mutation p.L684S 0.10 tolerated(0.13) benign(0.004) TCGA-UF-A7JO-01 14 91805805 91805805 A G CCDC88C Missense_Mutation p.L209P 0.17 deleterious(0.03) probably_damaging(0.992) TCGA-UF-A7JO-01 14 99866585 99866585 C G SETD3 Missense_Mutation p.E397Q 0.08 tolerated(0.14) possibly_damaging(0.584) TCGA-UF-A7JO-01 15 38808409 38808409 G A RASGRP1 Missense_Mutation p.R222W 0.09 deleterious(0.03) probably_damaging(0.987) TCGA-UF-A7JO-01 15 43815351 43815351 T C MAP1A Silent p.P560P 0.27 TCGA-UF-A7JO-01 15 44134857 44134857 C G WDR76 Missense_Mutation p.S289C 0.21 tolerated(0.22) benign(0.014) TCGA-UF-A7JO-01 15 45954317 45954317 C T SQRDL Silent p.D133D 0.14 TCGA-UF-A7JO-01 15 68506654 68506654 C T CLN6 Missense_Mutation p.V91I 0.21 tolerated(0.56) benign(0.003) TCGA-UF-A7JO-01 16 47117201 47117201 C T NETO2 Silent p.E503E 0.10 TCGA-UF-A7JO-01 16 67219151 67219151 G A EXOC3L1 Missense_Mutation p.A546V 0.18 tolerated(0.44) benign(0.004) TCGA-UF-A7JO-01 16 89341312 89341312 C T ANKRD11 Silent p.A2541A 0.25 TCGA-UF-A7JO-01 16 89804288 89804288 C T ZNF276 Nonsense_Mutation p.R517* 0.16 TCGA-UF-A7JO-01 16 90020771 90020771 C T DEF8 Silent p.D98D 0.12 TCGA-UF-A7JO-01 17 10370087 10370087 C G MYH4 5'UTR 0.16 TCGA-UF-A7JO-01 17 11711205 11711205 C A DNAH9 Missense_Mutation p.D2859E 0.13 benign(0.433) TCGA-UF-A7JO-01 17 16342471 16342471 C T TRPV2 3'Flank 0.16 TCGA-UF-A7JO-01 17 2203825 2203825 G C SMG6 Missense_Mutation p.F74L 0.15 tolerated_low_confidence(0.68) benign(0.001) TCGA-UF-A7JO-01 17 3365871 3365871 G T SPATA22 Missense_Mutation p.Q79K 0.24 tolerated(0.13) possibly_damaging(0.648) TCGA-UF-A7JO-01 17 42940217 42940217 G A EFTUD2 Missense_Mutation p.H491Y 0.27 tolerated(1) benign(0.008) TCGA-UF-A7JO-01 17 48704104 48704104 G A CACNA1G Missense_Mutation p.D2376N 0.25 deleterious_low_confidence(0) benign(0.158) TCGA-UF-A7JO-01 17 62026810 62026810 C T SCN4A Missense_Mutation p.E978K 0.11 tolerated(0.31) benign(0.201) TCGA-UF-A7JO-01 17 6377809 6377809 C T PITPNM3 Missense_Mutation p.G401S 0.19 deleterious(0.01) probably_damaging(0.923) TCGA-UF-A7JO-01 17 6610395 6610395 G C SLC13A5 Silent p.L61L 0.22 TCGA-UF-A7JO-01 17 74005808 74005808 C T EVPL Missense_Mutation p.E1160K 0.12 deleterious(0.03) benign(0.178) TCGA-UF-A7JO-01 17 7578211 7578211 C A TP53 Missense_Mutation p.R213L 0.11 deleterious(0) probably_damaging(1) TCGA-UF-A7JO-01 17 7579369 7579369 G C TP53 Missense_Mutation p.S106R 0.19 tolerated(0.41) benign(0.27) TCGA-UF-A7JO-01 17 7793095 7793095 G T CHD3 Splice_Site p.X130_splice 0.33 TCGA-UF-A7JO-01 18 51851063 51851063 C T STARD6 Silent p.%3D 0.19 TCGA-UF-A7JO-01 19 10610554 10610554 G A KEAP1 Silent p.F52F 0.07 TCGA-UF-A7JO-01 19 10610576 10610576 G A KEAP1 Missense_Mutation p.S45F 0.05 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JO-01 19 12089301 12089301 C G ZNF763 Missense_Mutation p.R191G 0.12 deleterious(0.02) benign(0.02) TCGA-UF-A7JO-01 19 14217608 14217608 C T PRKACA Silent p.G67G 0.06 TCGA-UF-A7JO-01 19 14938848 14938848 G A OR7A5 Missense_Mutation p.A69V 0.11 tolerated_low_confidence(1) benign(0.002) TCGA-UF-A7JO-01 19 35757744 35757744 C T LSR Missense_Mutation p.R388C 0.35 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JO-01 19 35842961 35842961 C T FFAR1 Silent p.V169V 0.31 TCGA-UF-A7JO-01 19 42754072 42754072 G A ERF Silent p.L94L 0.15 TCGA-UF-A7JO-01 19 48715113 48715113 C G CARD8 Missense_Mutation p.E490Q 0.08 tolerated(0.39) benign(0.306) TCGA-UF-A7JO-01 19 52034457 52034457 C T SIGLEC6 Missense_Mutation p.M128I 0.22 tolerated(0.42) benign(0.002) TCGA-UF-A7JO-01 19 55525965 55525965 C T GP6 Missense_Mutation p.A450T 0.17 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-UF-A7JO-01 19 879973 879973 C T MED16 Silent p.T439T 0.29 TCGA-UF-A7JO-01 19 8993422 8993422 G A MUC16 Silent p.I13889I 0.11 TCGA-UF-A7JO-01 1 117944812 117944812 G A MAN1A2 Missense_Mutation p.E103K 0.07 tolerated(0.34) benign(0.009) TCGA-UF-A7JO-01 1 12067225 12067225 G T MFN2 Missense_Mutation p.R663L 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-UF-A7JO-01 1 149879277 149879277 G A SV2A Silent p.F551F 0.10 TCGA-UF-A7JO-01 1 150443841 150443841 G C RPRD2 Missense_Mutation p.G806A 0.21 deleterious_low_confidence(0.01) benign(0.004) TCGA-UF-A7JO-01 1 151491225 151491225 C G CGN Missense_Mutation p.S77C 0.14 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JO-01 1 154569319 154569319 G C ADAR Missense_Mutation p.F744L 0.11 tolerated(0.1) benign(0.267) TCGA-UF-A7JO-01 1 156897444 156897444 G A LRRC71 Silent p.A273A 0.12 TCGA-UF-A7JO-01 1 157551407 157551407 A T FCRL4 Missense_Mutation p.V388D 0.14 deleterious(0) benign(0.289) TCGA-UF-A7JO-01 1 160535272 160535272 C T CD84 Missense_Mutation p.A104T 0.23 tolerated(0.1) benign(0.031) TCGA-UF-A7JO-01 1 17586195 17586195 C T PADI3 Missense_Mutation p.A72V 0.24 tolerated(0.06) benign(0.003) TCGA-UF-A7JO-01 1 180044257 180044257 C A CEP350 Missense_Mutation p.R1890S 0.23 possibly_damaging(0.749) TCGA-UF-A7JO-01 1 180053305 180053305 C T CEP350 Nonsense_Mutation p.Q2093* 0.21 TCGA-UF-A7JO-01 1 186106782 186106782 C G HMCN1 Missense_Mutation p.Q4579E 0.17 benign(0.016) TCGA-UF-A7JO-01 1 204438850 204438850 G A PIK3C2B Silent p.A27A 0.19 TCGA-UF-A7JO-01 1 215777532 215777532 G A KCTD3 Silent p.V399V 0.16 TCGA-UF-A7JO-01 1 223983857 223983857 T C TP53BP2 Missense_Mutation p.N795S 0.17 tolerated(0.08) benign(0.01) TCGA-UF-A7JO-01 1 23520183 23520183 C T HTR1D Missense_Mutation p.R177Q 0.19 deleterious(0.04) probably_damaging(0.99) TCGA-UF-A7JO-01 1 240371619 240371619 C T FMN2 Silent p.P1169P 0.16 TCGA-UF-A7JO-01 1 244681979 244681979 C T C1orf101 Missense_Mutation p.S172L 0.13 deleterious(0.01) benign(0.117) TCGA-UF-A7JO-01 1 247694861 247694861 G A OR2C3 Missense_Mutation p.A318V 0.19 tolerated_low_confidence(0.19) benign(0.092) TCGA-UF-A7JO-01 1 32740385 32740385 C T LCK Silent p.Y51Y 0.10 TCGA-UF-A7JO-01 1 39494450 39494450 G C NDUFS5 Missense_Mutation p.L18F 0.07 tolerated(0.09) benign(0.078) TCGA-UF-A7JO-01 1 70820689 70820689 G A HHLA3 Missense_Mutation p.A19T 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.695) TCGA-UF-A7JO-01 1 90179377 90179377 G C LRRC8C Missense_Mutation p.Q416H 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-UF-A7JO-01 1 94033378 94033378 G A BCAR3 Silent p.L669L 0.10 TCGA-UF-A7JO-01 1 94640110 94640110 C T ARHGAP29 Missense_Mutation p.R1034K 0.14 tolerated(0.26) benign(0.01) TCGA-UF-A7JO-01 20 18576734 18576734 G C DTD1 Missense_Mutation p.E73D 0.07 tolerated(0.12) possibly_damaging(0.516) TCGA-UF-A7JO-01 20 30253740 30253740 G A BCL2L1 3'UTR 0.14 TCGA-UF-A7JO-01 20 39794930 39794930 C G PLCG1 Silent p.L632L 0.17 TCGA-UF-A7JO-01 20 43836061 43836061 C T SEMG1 Silent p.H41H 0.16 TCGA-UF-A7JO-01 20 62193700 62193700 G A HELZ2 Missense_Mutation p.A2113V 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-UF-A7JO-01 21 17150305 17150305 C T USP25 Silent p.F117F 0.10 TCGA-UF-A7JO-01 21 19737462 19737462 G T TMPRSS15 Silent p.I256I 0.08 TCGA-UF-A7JO-01 21 22656710 22656710 G T NCAM2 Missense_Mutation p.L109F 0.12 deleterious(0.01) probably_damaging(1) TCGA-UF-A7JO-01 21 31066223 31066223 G A GRIK1 Missense_Mutation p.S93L 0.21 deleterious(0) benign(0.441) TCGA-UF-A7JO-01 21 47535818 47535818 G A COL6A2 Silent p.E278E 0.22 TCGA-UF-A7JO-01 22 25007085 25007085 G A GGT1 Missense_Mutation p.V13M 0.21 tolerated(0.09) benign(0.194) TCGA-UF-A7JO-01 22 37967898 37967898 G C LGALS2 Nonsense_Mutation p.S16* 0.20 TCGA-UF-A7JO-01 22 42605836 42605836 G A TCF20 Missense_Mutation p.P1826S 0.04 benign(0.271) TCGA-UF-A7JO-01 2 107041515 107041515 A G RGPD3 Missense_Mutation p.F970L 0.21 tolerated(0.32) benign(0.014) TCGA-UF-A7JO-01 2 175689187 175689187 G C CHN1 Silent p.L229L 0.12 TCGA-UF-A7JO-01 2 179623873 179623873 C G TTN Missense_Mutation p.D3381H 0.15 TCGA-UF-A7JO-01 2 202131358 202131359 AA - CASP8 Frame_Shift_Del p.K110Efs*19 0.21 TCGA-UF-A7JO-01 2 210561334 210561334 G C MAP2 Missense_Mutation p.A1417P 0.07 tolerated(0.15) benign(0.063) TCGA-UF-A7JO-01 2 233028272 233028272 C G DIS3L2 Missense_Mutation p.L352V 0.16 deleterious(0) possibly_damaging(0.844) TCGA-UF-A7JO-01 2 238245116 238245116 G A COL6A3 Missense_Mutation p.P2876L 0.28 unknown(0) TCGA-UF-A7JO-01 2 241835205 241835205 G A C2orf54 Silent p.F70F 0.24 TCGA-UF-A7JO-01 2 27278919 27278919 C T AGBL5 Silent p.G426G 0.22 TCGA-UF-A7JO-01 2 31621561 31621561 C G XDH Missense_Mutation p.R104T 0.18 deleterious(0) benign(0.434) TCGA-UF-A7JO-01 2 32474719 32474719 C A NLRC4 Silent p.L738L 0.10 TCGA-UF-A7JO-01 2 74597184 74597184 G A DCTN1 Silent p.L434L 0.22 TCGA-UF-A7JO-01 2 80136803 80136803 C T CTNNA2 Silent p.S312S 0.19 TCGA-UF-A7JO-01 2 99006124 99006124 G C CNGA3 Missense_Mutation p.K151N 0.09 tolerated(0.29) benign(0.002) TCGA-UF-A7JO-01 2 99226346 99226346 C T UNC50 Missense_Mutation p.R42W 0.04 deleterious(0) probably_damaging(0.957) TCGA-UF-A7JO-01 3 10357041 10357041 C T SEC13 Missense_Mutation p.R43H 0.19 tolerated(0.06) benign(0.058) TCGA-UF-A7JO-01 3 126751384 126751385 - CCT PLXNA1 In_Frame_Ins p.S1797dup 0.29 TCGA-UF-A7JO-01 3 130743867 130743867 C G ASTE1 Missense_Mutation p.R95T 0.06 deleterious(0) probably_damaging(1) TCGA-UF-A7JO-01 3 142285059 142285059 C T ATR Missense_Mutation p.V66M 0.16 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-UF-A7JO-01 3 142430410 142430410 G A PLS1 Missense_Mutation p.R566H 0.18 deleterious(0.01) possibly_damaging(0.727) TCGA-UF-A7JO-01 3 14798948 14798948 C T C3orf20 Missense_Mutation p.R671W 0.18 deleterious(0) probably_damaging(1) TCGA-UF-A7JO-01 3 148458871 148458871 G A AGTR1 Missense_Mutation p.D17N 0.20 tolerated(0.66) benign(0.007) TCGA-UF-A7JO-01 3 154146790 154146790 G A GPR149 Silent p.L205L 0.22 TCGA-UF-A7JO-01 3 156411951 156411951 C T TIPARP Missense_Mutation p.H354Y 0.07 tolerated(0.68) benign(0.013) TCGA-UF-A7JO-01 3 160231914 160231914 G A KPNA4 Missense_Mutation p.A363V 0.19 tolerated(0.07) possibly_damaging(0.862) TCGA-UF-A7JO-01 3 170724960 170724960 C T SLC2A2 Missense_Mutation p.V197I 0.36 deleterious(0.02) probably_damaging(0.954) TCGA-UF-A7JO-01 3 178947838 178947838 T A PIK3CA Missense_Mutation p.C905S 0.26 deleterious(0) possibly_damaging(0.688) TCGA-UF-A7JO-01 3 186364068 186364068 A G FETUB Missense_Mutation p.Y209C 0.18 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JO-01 3 195595418 195595418 G A TNK2 Missense_Mutation p.T647M 0.40 deleterious(0) possibly_damaging(0.888) TCGA-UF-A7JO-01 3 44795848 44795848 G A KIAA1143 Nonsense_Mutation p.Q41* 0.06 TCGA-UF-A7JO-01 3 49394958 49394958 C T GPX1 Missense_Mutation p.D159N 0.18 deleterious(0.04) possibly_damaging(0.508) TCGA-UF-A7JO-01 3 53215501 53215501 C T PRKCD Missense_Mutation p.P140S 0.20 tolerated(0.73) benign(0.004) TCGA-UF-A7JO-01 4 103534694 103534694 C A NFKB1 Missense_Mutation p.A902D 0.19 tolerated(0.07) benign(0.12) TCGA-UF-A7JO-01 4 103988644 103988644 T C SLC9B2 Missense_Mutation p.T22A 0.17 tolerated(0.26) benign(0.002) TCGA-UF-A7JO-01 4 129924970 129924970 C G SCLT1 Missense_Mutation p.E118Q 0.13 tolerated(0.51) possibly_damaging(0.452) TCGA-UF-A7JO-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.19 deleterious(0) probably_damaging(1) TCGA-UF-A7JO-01 4 169336575 169336575 G A DDX60L Missense_Mutation p.A988V 0.31 deleterious(0.01) possibly_damaging(0.735) TCGA-UF-A7JO-01 4 1730384 1730384 G A TACC3 Missense_Mutation p.G419R 0.17 tolerated(0.06) benign(0.013) TCGA-UF-A7JO-01 4 187524602 187524602 T C FAT1 Missense_Mutation p.D3693G 0.24 possibly_damaging(0.873) TCGA-UF-A7JO-01 4 187539265 187539266 - C FAT1 Frame_Shift_Ins p.S2826Kfs*2 0.11 TCGA-UF-A7JO-01 4 187630900 187630900 C A FAT1 Nonsense_Mutation p.E28* 0.18 TCGA-UF-A7JO-01 4 86714 86714 A G Z95704.2 RNA 0.27 TCGA-UF-A7JO-01 5 114611171 114611171 A T CCDC112 Silent p.P220P 0.24 TCGA-UF-A7JO-01 5 1264618 1264618 C T TERT Missense_Mutation p.G915D 0.17 tolerated(0.07) possibly_damaging(0.461) TCGA-UF-A7JO-01 5 140482233 140482233 C G PCDHB3 Missense_Mutation p.S667C 0.10 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-UF-A7JO-01 5 140857005 140857005 C G PCDHGC3 Missense_Mutation p.T441R 0.14 tolerated(0.13) benign(0.01) TCGA-UF-A7JO-01 5 153190726 153190726 C A GRIA1 Missense_Mutation p.Q898K 0.21 tolerated_low_confidence(0.06) benign(0.179) TCGA-UF-A7JO-01 5 161112982 161112982 C T GABRA6 5'UTR 0.15 TCGA-UF-A7JO-01 5 175763877 175763877 C G SIMC1 Missense_Mutation p.Q342E 0.10 tolerated(0.23) benign(0.024) TCGA-UF-A7JO-01 5 180043378 180043378 G A FLT4 Missense_Mutation p.R1070C 0.15 deleterious(0) probably_damaging(1) TCGA-UF-A7JO-01 5 32390475 32390475 C T ZFR Missense_Mutation p.R683Q 0.25 tolerated(0.08) unknown(0) TCGA-UF-A7JO-01 5 37187536 37187536 C G C5orf42 Missense_Mutation p.E1354Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JO-01 5 43298225 43298225 G A HMGCS1 Silent p.L154L 0.20 TCGA-UF-A7JO-01 5 6374523 6374523 G T MED10 Silent p.R75R 0.09 TCGA-UF-A7JO-01 6 106555311 106555311 C G PRDM1 Missense_Mutation p.L810V 0.13 tolerated(0.07) possibly_damaging(0.816) TCGA-UF-A7JO-01 6 160969656 160969656 G A LPA Missense_Mutation p.A1670V 0.15 deleterious(0) possibly_damaging(0.866) TCGA-UF-A7JO-01 6 17616845 17616845 G T NUP153 Missense_Mutation p.A1419E 0.10 deleterious(0) probably_damaging(0.978) TCGA-UF-A7JO-01 6 31548884 31548884 G A LTB Silent p.L113L 0.41 TCGA-UF-A7JO-01 6 33176605 33176605 G A RING1 Silent p.T2T 0.12 TCGA-UF-A7JO-01 6 33391282 33391282 C T SYNGAP1 Silent p.T32T 0.06 TCGA-UF-A7JO-01 6 40360117 40360117 G A LRFN2 Silent p.S645S 0.21 TCGA-UF-A7JO-01 6 69666071 69666071 G C BAI3 Missense_Mutation p.E451Q 0.27 tolerated(0.92) benign(0.322) TCGA-UF-A7JO-01 6 76022129 76022129 C T FILIP1 Missense_Mutation p.R1140Q 0.16 deleterious(0) possibly_damaging(0.866) TCGA-UF-A7JO-01 7 121650440 121650440 G T PTPRZ1 Missense_Mutation p.R447I 0.12 tolerated(0.07) possibly_damaging(0.534) TCGA-UF-A7JO-01 7 128119373 128119373 G A METTL2B Missense_Mutation p.E122K 0.14 tolerated(0.46) benign(0.005) TCGA-UF-A7JO-01 7 142364624 142364624 C T TRBV24-1 Nonsense_Mutation p.R87* 0.21 TCGA-UF-A7JO-01 7 143633211 143633211 G C OR2F2 Missense_Mutation p.E296Q 0.24 deleterious(0) possibly_damaging(0.833) TCGA-UF-A7JO-01 7 150034380 150034380 C G LRRC61 Missense_Mutation p.P144A 0.12 tolerated(0.46) benign(0.003) TCGA-UF-A7JO-01 7 92926149 92926149 G A CCDC132 Splice_Site p.X421_splice 0.20 TCGA-UF-A7JO-01 8 121502758 121502758 G A MTBP Silent p.Q465Q 0.09 TCGA-UF-A7JO-01 8 144808407 144808407 G A FAM83H Missense_Mutation p.P1075L 0.11 tolerated(0.16) benign(0.002) TCGA-UF-A7JO-01 8 52232381 52232381 A T PXDNL 3'UTR 0.26 TCGA-UF-A7JO-01 8 68956723 68956723 C T PREX2 Missense_Mutation p.R281W 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-UF-A7JO-01 9 132084723 132084731 CCAGTTCTG - C9orf106 RNA 0.20 TCGA-UF-A7JO-01 9 139658213 139658213 C G LCN15 Missense_Mutation p.D87H 0.18 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JO-01 9 139904519 139904519 G A ABCA2 Silent p.D2137D 0.17 TCGA-UF-A7JO-01 9 14674322 14674322 T C ZDHHC21 Missense_Mutation p.H6R 0.04 tolerated(0.15) benign(0.142) TCGA-UF-A7JO-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.32 TCGA-UF-A7JO-01 9 36100388 36100388 G T RECK Missense_Mutation p.M382I 0.25 tolerated(0.44) benign(0.018) TCGA-UF-A7JO-01 9 72962884 72962884 A T SMC5 Missense_Mutation p.N940I 0.18 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JO-01 9 74975561 74975561 C T ZFAND5 Missense_Mutation p.G45D 0.16 tolerated(0.4) benign(0.228) TCGA-UF-A7JO-01 9 99521743 99521743 C T ZNF510 Missense_Mutation p.E457K 0.10 tolerated(0.07) probably_damaging(0.999) TCGA-UF-A7JO-01 X 100274273 100274273 G A TRMT2B Missense_Mutation p.H430Y 0.11 tolerated(0.07) benign(0.12) TCGA-UF-A7JO-01 X 101821949 101821949 C T NXF4 RNA 0.28 TCGA-UF-A7JO-01 X 118787004 118787004 C T SEPT6 Splice_Site p.X114_splice 0.15 TCGA-UF-A7JO-01 X 132159687 132159687 C A USP26 Missense_Mutation p.W854C 0.27 deleterious(0) probably_damaging(1) TCGA-UF-A7JO-01 X 14027046 14027046 G A GEMIN8 Missense_Mutation p.P239S 0.09 tolerated(0.06) possibly_damaging(0.723) TCGA-UF-A7JO-01 X 140335601 140335601 T G SPANXC 3'UTR 0.20 TCGA-UF-A7JO-01 X 142718733 142718733 G C SLITRK4 Silent p.L64L 0.15 TCGA-UF-A7JO-01 X 151128415 151128415 C G GABRE Missense_Mutation p.W227S 0.21 deleterious(0) possibly_damaging(0.846) TCGA-UF-A7JO-01 X 47272087 47272087 C T ZNF157 Silent p.L205L 0.09 TCGA-UF-A7JO-01 X 47917783 47917783 G A ZNF630 3'UTR 0.39 TCGA-UF-A7JO-01 X 52681920 52681920 C G SSX7 Missense_Mutation p.G62R 0.09 deleterious(0) probably_damaging(0.946) TCGA-UF-A7JO-01 X 53268428 53268428 G A IQSEC2 Missense_Mutation p.R1022C 0.11 tolerated(0.18) benign(0.193) TCGA-UF-A7JO-01 X 56590909 56590909 G T UBQLN2 Missense_Mutation p.M201I 0.12 tolerated(0.06) benign(0.074) TCGA-UF-A7JO-01 X 62570071 62570071 C G SPIN4 Missense_Mutation p.D210H 0.11 deleterious(0.01) possibly_damaging(0.905) TCGA-UF-A7JO-01 X 65252479 65252479 A G VSIG4 Silent p.Y175Y 0.08 TCGA-UF-A7JO-01 X 70375176 70375176 C G NLGN3 Silent p.V230V 0.05 TCGA-UF-A7JO-01 X 70603878 70603878 C A TAF1 Missense_Mutation p.L692I 0.07 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JO-01 X 70613190 70613190 C T TAF1 Missense_Mutation p.R1051C 0.20 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JS-01 10 101090568 101090568 T A CNNM1 Missense_Mutation p.I475N 0.30 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JS-01 10 101997803 101997804 - T CWF19L1 Nonsense_Mutation p.Y410* 0.26 TCGA-UF-A7JS-01 10 435928 435928 C T DIP2C Intron 0.15 TCGA-UF-A7JS-01 10 88696861 88696861 G A MMRN2 Missense_Mutation p.A830V 0.34 tolerated(0.52) benign(0.277) TCGA-UF-A7JS-01 10 96322571 96322571 A - HELLS Frame_Shift_Del p.M125* 0.19 TCGA-UF-A7JS-01 11 102668112 102668112 C G MMP1 Silent p.V75V 0.03 TCGA-UF-A7JS-01 11 117374650 117374650 C T DSCAML1 Missense_Mutation p.V817I 0.43 tolerated(0.16) benign(0.244) TCGA-UF-A7JS-01 11 5444249 5444249 G A OR51Q1 Silent p.L273L 0.32 TCGA-UF-A7JS-01 11 55606557 55606557 A G OR5D16 Silent p.V110V 0.46 TCGA-UF-A7JS-01 11 59599164 59599164 T C GIF Silent p.T393T 0.38 TCGA-UF-A7JS-01 11 6412781 6412781 C G SMPD1 Silent p.L162L 0.37 TCGA-UF-A7JS-01 11 77907430 77907430 C T USP35 Missense_Mutation p.R47C 0.47 deleterious(0) unknown(0) TCGA-UF-A7JS-01 11 9455372 9455372 G A IPO7 Missense_Mutation p.D685N 0.04 tolerated(0.06) possibly_damaging(0.548) TCGA-UF-A7JS-01 12 123789230 123789230 C G SBNO1 Missense_Mutation p.E1223Q 0.23 tolerated(0.4) benign(0.017) TCGA-UF-A7JS-01 12 42538396 42538396 G A GXYLT1 Missense_Mutation p.S18L 0.31 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-UF-A7JS-01 12 55025612 55025612 C G LACRT Missense_Mutation p.E89Q 0.25 deleterious_low_confidence(0.05) unknown(0) TCGA-UF-A7JS-01 12 57351266 57351269 ACAG - RDH16 5'UTR 0.19 TCGA-UF-A7JS-01 13 39918178 39918178 G A LHFP Silent p.I166I 0.40 TCGA-UF-A7JS-01 13 76427494 76427494 C A LMO7 Missense_Mutation p.A1311D 0.53 deleterious(0.04) benign(0.14) TCGA-UF-A7JS-01 14 106311745 106311745 G A IGHD Silent p.T89T 0.28 TCGA-UF-A7JS-01 14 23793497 23793497 A G PABPN1 Missense_Mutation p.R294G 0.20 deleterious(0.01) possibly_damaging(0.873) TCGA-UF-A7JS-01 14 67671271 67671271 T C FAM71D Missense_Mutation p.F126S 0.18 deleterious(0) probably_damaging(0.979) TCGA-UF-A7JS-01 14 75748126 75748127 - A FOS Frame_Shift_Ins 0.25 TCGA-UF-A7JS-01 14 93760741 93760741 T C BTBD7 Missense_Mutation p.M209V 0.30 tolerated(0.36) benign(0) TCGA-UF-A7JS-01 15 24923771 24923771 A T NPAP1 Silent p.P919P 0.24 TCGA-UF-A7JS-01 15 41337138 41337138 G C INO80 Silent p.L957L 0.34 TCGA-UF-A7JS-01 15 72700048 72700048 C G TMEM202 Silent p.L212L 0.31 TCGA-UF-A7JS-01 16 3014913 3014913 C T KREMEN2 Missense_Mutation p.R50C 0.38 deleterious(0.01) probably_damaging(0.932) TCGA-UF-A7JS-01 16 74750290 74750290 G T FA2H Missense_Mutation p.L332M 0.33 tolerated(0.27) possibly_damaging(0.71) TCGA-UF-A7JS-01 17 18397767 18397767 C T LGALS9C 3'UTR 0.21 TCGA-UF-A7JS-01 17 70118926 70118926 G C SOX9 Missense_Mutation p.K166N 0.27 deleterious(0) benign(0.419) TCGA-UF-A7JS-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.36 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JS-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.37 tolerated(0.11) benign(0.308) TCGA-UF-A7JS-01 19 14024411 14024411 A G CC2D1A Silent p.P236P 0.20 TCGA-UF-A7JS-01 19 40880525 40882512 19:40880525-40882512 - PLD3 large deletion p.X340_splice 0.16 TCGA-UF-A7JS-01 19 44008241 44008241 C G PHLDB3 Silent p.G10G 0.33 TCGA-UF-A7JS-01 19 44008242 44008242 C T PHLDB3 Missense_Mutation p.G10E 0.35 deleterious_low_confidence(0.04) benign(0.01) TCGA-UF-A7JS-01 19 52249322 52249322 C T FPR1 Missense_Mutation p.R309Q 0.32 tolerated(0.2) benign(0.153) TCGA-UF-A7JS-01 19 52249948 52249948 G A FPR1 Silent p.F100F 0.24 TCGA-UF-A7JS-01 19 53770579 53770580 - T VN1R4 Frame_Shift_Ins p.S114Ifs*7 0.15 TCGA-UF-A7JS-01 19 56545030 56545030 C A NLRP5 Missense_Mutation p.A857E 0.24 deleterious(0.02) possibly_damaging(0.901) TCGA-UF-A7JS-01 19 59061536 59061536 A T TRIM28 Missense_Mutation p.D739V 0.33 deleterious(0) probably_damaging(1) TCGA-UF-A7JS-01 1 11141274 11141274 G T EXOSC10 Silent p.L434L 0.30 TCGA-UF-A7JS-01 1 1271768 1271768 G A DVL1 Silent p.S589S 0.28 TCGA-UF-A7JS-01 1 1271769 1271769 C A DVL1 Missense_Mutation p.S589I 0.28 tolerated(0.17) unknown(0) TCGA-UF-A7JS-01 1 1372485 1372485 C T VWA1 Silent p.T84T 0.33 TCGA-UF-A7JS-01 1 182369659 182369659 A G TEDDM1 5'UTR 0.42 TCGA-UF-A7JS-01 1 206649571 206649571 A C IKBKE Missense_Mutation p.I136L 0.16 tolerated(0.1) benign(0.308) TCGA-UF-A7JS-01 1 208219239 208219239 G C PLXNA2 Missense_Mutation p.S1160W 0.19 deleterious(0) probably_damaging(0.997) TCGA-UF-A7JS-01 1 214705915 214705915 C T PTPN14 Intron 0.50 TCGA-UF-A7JS-01 1 216251460 216251460 T A USH2A Missense_Mutation p.N1848I 0.47 benign(0.319) TCGA-UF-A7JS-01 1 55065012 55065012 T C ACOT11 Missense_Mutation p.F270L 0.30 tolerated(0.17) probably_damaging(0.951) TCGA-UF-A7JS-01 1 64643994 64643994 G A ROR1 Missense_Mutation p.S757N 0.23 tolerated(0.07) benign(0.348) TCGA-UF-A7JS-01 20 31680265 31680265 C T BPIFB4 Missense_Mutation p.T382M 0.31 deleterious(0.02) benign(0.336) TCGA-UF-A7JS-01 20 44167974 44167974 C T WFDC6 Missense_Mutation p.A25T 0.28 tolerated(0.56) benign(0.207) TCGA-UF-A7JS-01 21 19666606 19666606 C T TMPRSS15 Missense_Mutation p.A823T 0.24 deleterious(0) probably_damaging(1) TCGA-UF-A7JS-01 21 34925139 34925139 C T SON Missense_Mutation p.S1201L 0.29 benign(0.092) TCGA-UF-A7JS-01 21 44524456 44524456 G T U2AF1 Missense_Mutation p.S34Y 0.24 deleterious(0) probably_damaging(0.987) TCGA-UF-A7JS-01 22 37420665 37420665 C T MPST Missense_Mutation p.R157C 0.42 deleterious(0.01) benign(0.387) TCGA-UF-A7JS-01 22 50316911 50316911 C G CRELD2 Missense_Mutation p.P289A 0.13 tolerated(0.06) possibly_damaging(0.801) TCGA-UF-A7JS-01 22 50960821 50960821 C G NCAPH2 Missense_Mutation p.S428C 0.22 tolerated(0.25) benign(0.093) TCGA-UF-A7JS-01 2 112922711 112922711 C T FBLN7 Silent p.P123P 0.30 TCGA-UF-A7JS-01 2 179501165 179501165 T A TTN Silent p.G13763G 0.25 TCGA-UF-A7JS-01 2 191555210 191555210 A C NAB1 3'UTR 0.33 TCGA-UF-A7JS-01 2 212286830 212286830 C A ERBB4 Splice_Site p.X956_splice 0.29 TCGA-UF-A7JS-01 3 128181452 128181452 C A DNAJB8 Missense_Mutation p.G213W 0.26 deleterious(0) probably_damaging(1) TCGA-UF-A7JS-01 3 183029545 183029545 G T MCF2L2 Missense_Mutation p.L257I 0.26 tolerated(0.13) benign(0.055) TCGA-UF-A7JS-01 3 184044414 184044414 G A EIF4G1 Missense_Mutation p.A1115T 0.20 tolerated(0.37) benign(0.001) TCGA-UF-A7JS-01 3 65372827 65372827 C T MAGI1 Intron 0.31 TCGA-UF-A7JS-01 4 154216657 154216657 G C TRIM2 Missense_Mutation p.D327H 0.29 deleterious(0.02) possibly_damaging(0.764) TCGA-UF-A7JS-01 4 175238582 175238582 T G CEP44 Intron 0.23 TCGA-UF-A7JS-01 4 68693217 68693217 C G TMPRSS11D Missense_Mutation p.W238C 0.33 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JS-01 5 156186523 156186523 G A SGCD 3'UTR 0.35 TCGA-UF-A7JS-01 5 180432367 180432367 C T BTNL3 Missense_Mutation p.P299L 0.19 deleterious(0.02) possibly_damaging(0.548) TCGA-UF-A7JS-01 6 134210974 134210974 C G TCF21 Missense_Mutation p.P147A 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-UF-A7JS-01 6 26107930 26107930 T C HIST1H1T Missense_Mutation p.K131R 0.30 deleterious(0) probably_damaging(0.986) TCGA-UF-A7JS-01 6 27833110 27833110 C T HIST1H2AL 5'UTR 0.21 TCGA-UF-A7JS-01 6 30457630 30457630 G T HLA-E Silent p.P64P 0.40 TCGA-UF-A7JS-01 7 124491999 124491999 T G POT1 Missense_Mutation p.L292F 0.37 deleterious(0.03) benign(0.41) TCGA-UF-A7JS-01 7 48563912 48563912 G T ABCA13 Missense_Mutation p.R4707I 0.32 probably_damaging(0.94) TCGA-UF-A7JS-01 8 101163637 101163637 C A POLR2K Silent p.I18I 0.42 TCGA-UF-A7JS-01 8 132051646 132051646 G A ADCY8 Missense_Mutation p.R312W 0.16 tolerated(0.17) possibly_damaging(0.657) TCGA-UF-A7JS-01 8 27516175 27516175 C G SCARA3 Missense_Mutation p.T163S 0.28 tolerated(0.55) benign(0.008) TCGA-UF-A7JS-01 8 41552808 41552808 C T ANK1 Missense_Mutation p.R1042H 0.41 tolerated(0.21) probably_damaging(0.998) TCGA-UF-A7JS-01 8 56864548 56864548 G C LYN Missense_Mutation p.D171H 0.18 deleterious(0) probably_damaging(0.995) TCGA-UF-A7JS-01 9 134010363 134010363 C A NUP214 Missense_Mutation p.H304N 0.19 unknown(0) TCGA-UF-A7JS-01 9 140444661 140444661 G C PNPLA7 5'UTR 0.16 TCGA-UF-A7JS-01 9 94903918 94903918 C G snoU13 3'Flank 0.45 TCGA-UF-A7JS-01 X 70080744 70080744 G C TEX11 Nonsense_Mutation p.S111* 0.48 TCGA-UF-A7JT-01 10 102746724 102746724 C T MRPL43 Missense_Mutation p.A83T 0.09 tolerated(0.29) benign(0.14) TCGA-UF-A7JT-01 10 27702334 27702334 G A PTCHD3 Silent p.S282S 0.21 TCGA-UF-A7JT-01 10 30317632 30317632 G T KIAA1462 Missense_Mutation p.P482H 0.21 deleterious(0.02) probably_damaging(0.927) TCGA-UF-A7JT-01 10 43318668 43318668 G A BMS1 Missense_Mutation p.E1079K 0.25 deleterious(0.04) benign(0.099) TCGA-UF-A7JT-01 10 47087657 47087657 C T NPY4R Missense_Mutation p.H292Y 0.12 tolerated(0.29) benign(0.057) TCGA-UF-A7JT-01 10 81051996 81051996 G A ZMIZ1 Silent p.A280A 0.24 TCGA-UF-A7JT-01 10 90708681 90708681 C T ACTA2 Missense_Mutation p.E3K 0.19 tolerated_low_confidence(0.05) benign(0.002) TCGA-UF-A7JT-01 10 98808760 98808760 C T SLIT1 Missense_Mutation p.A473T 0.25 deleterious(0.02) benign(0.013) TCGA-UF-A7JT-01 11 101829016 101829016 G T KIAA1377 Missense_Mutation p.L208F 0.16 deleterious(0.01) probably_damaging(0.951) TCGA-UF-A7JT-01 11 109294765 109294765 C T C11orf87 Missense_Mutation p.R136W 0.17 deleterious(0) possibly_damaging(0.629) TCGA-UF-A7JT-01 11 117859132 117859132 G C IL10RA Missense_Mutation p.E35Q 0.18 deleterious(0.05) possibly_damaging(0.841) TCGA-UF-A7JT-01 11 125359605 125359605 C T FEZ1 Silent p.P23P 0.23 TCGA-UF-A7JT-01 11 18320456 18320456 G C HPS5 Silent p.V349V 0.11 TCGA-UF-A7JT-01 11 47595145 47595145 C T KBTBD4 Missense_Mutation p.M314I 0.10 tolerated(0.1) benign(0.054) TCGA-UF-A7JT-01 11 62297854 62297854 C G AHNAK Missense_Mutation p.L1345F 0.09 benign(0.197) TCGA-UF-A7JT-01 11 64085607 64085607 C T PRDX5 5'UTR 0.42 TCGA-UF-A7JT-01 11 65004163 65004163 G A SLC22A20 RNA 0.21 TCGA-UF-A7JT-01 11 65617969 65617969 C T SNX32 Missense_Mutation p.H148Y 0.31 deleterious(0.03) benign(0.186) TCGA-UF-A7JT-01 11 71804685 71804685 G A LRTOMT 5'UTR 0.17 TCGA-UF-A7JT-01 11 76255846 76255846 G A C11orf30 Missense_Mutation p.E1085K 0.09 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-UF-A7JT-01 11 77602724 77602724 G A INTS4 Intron 0.18 TCGA-UF-A7JT-01 12 100042510 100042510 C T FAM71C Silent p.I186I 0.21 TCGA-UF-A7JT-01 12 117191824 117191824 G A RNFT2 Missense_Mutation p.A196T 0.26 tolerated(0.31) benign(0.037) TCGA-UF-A7JT-01 12 133384784 133384784 G A GOLGA3 Missense_Mutation p.P291S 0.23 tolerated_low_confidence(0.44) benign(0.053) TCGA-UF-A7JT-01 12 14695211 14695211 T G PLBD1 Missense_Mutation p.H117P 0.16 deleterious(0) probably_damaging(0.986) TCGA-UF-A7JT-01 12 21377690 21377690 G C SLCO1B1 Silent p.L594L 0.08 TCGA-UF-A7JT-01 12 43823483 43823483 G A ADAMTS20 Silent p.T1142T 0.32 TCGA-UF-A7JT-01 12 49061244 49061244 G A KANSL2 Intron 0.10 TCGA-UF-A7JT-01 12 49412548 49412548 C A PRKAG1 5'UTR 0.27 TCGA-UF-A7JT-01 12 49422626 49422627 AG - KMT2D Frame_Shift_Del p.S4789Cfs*27 0.22 TCGA-UF-A7JT-01 12 49427258 49427258 G A KMT2D Nonsense_Mutation p.Q3744* 0.20 TCGA-UF-A7JT-01 12 49725031 49725031 G A TROAP Silent p.L711L 0.24 TCGA-UF-A7JT-01 12 50829270 50829270 G C LARP4 Splice_Site p.X133_splice 0.25 TCGA-UF-A7JT-01 12 52910888 52910889 - AC KRT5 Intron 0.19 TCGA-UF-A7JT-01 12 53187000 53187000 C T KRT3 Missense_Mutation p.D292N 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-UF-A7JT-01 12 53800378 53800378 G C SP1 Missense_Mutation p.G562A 0.11 tolerated(0.66) benign(0.001) TCGA-UF-A7JT-01 12 56221509 56221509 C T DNAJC14 Missense_Mutation p.G312R 0.32 tolerated(0.06) benign(0.002) TCGA-UF-A7JT-01 12 56346614 56346614 G A DGKA Missense_Mutation p.D614N 0.09 deleterious(0.03) possibly_damaging(0.752) TCGA-UF-A7JT-01 12 56726847 56726847 G A PAN2 Missense_Mutation p.A11V 0.28 deleterious_low_confidence(0.02) benign(0.122) TCGA-UF-A7JT-01 12 56994065 56994065 G A BAZ2A Silent p.L1606L 0.12 TCGA-UF-A7JT-01 12 66935696 66935696 C T GRIP1 Missense_Mutation p.M57I 0.17 tolerated(1) benign(0) TCGA-UF-A7JT-01 12 674476 674476 G C NINJ2 Missense_Mutation p.I164M 0.17 deleterious(0.01) possibly_damaging(0.812) TCGA-UF-A7JT-01 12 72956692 72956692 C A TRHDE Silent p.L593L 0.22 TCGA-UF-A7JT-01 13 25009273 25009273 G A PARP4 Missense_Mutation p.P1336S 0.12 tolerated(0.32) benign(0.001) TCGA-UF-A7JT-01 13 99532804 99532804 C T DOCK9 Silent p.L956L 0.30 TCGA-UF-A7JT-01 13 99573303 99573303 C T DOCK9 Missense_Mutation p.D208N 0.27 deleterious(0) probably_damaging(0.989) TCGA-UF-A7JT-01 14 105196289 105196289 G A ADSSL1 Silent p.T20T 0.30 TCGA-UF-A7JT-01 14 22363179 22363179 G A TRAV8-4 Missense_Mutation p.D104N 0.26 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 14 23311907 23311907 C G MMP14 Silent p.V223V 0.09 TCGA-UF-A7JT-01 14 23346342 23346342 C T LRP10 Missense_Mutation p.T583I 0.34 tolerated(0.31) benign(0.046) TCGA-UF-A7JT-01 14 64936100 64936100 G A AKAP5 Missense_Mutation p.E330K 0.21 deleterious(0) possibly_damaging(0.859) TCGA-UF-A7JT-01 14 65007732 65007732 C T HSPA2 Silent p.A55A 0.20 TCGA-UF-A7JT-01 14 65415117 65415117 G T RAB15 3'UTR 0.21 TCGA-UF-A7JT-01 14 70633708 70633708 C T SLC8A3 Missense_Mutation p.E478K 0.13 deleterious(0.03) probably_damaging(0.994) TCGA-UF-A7JT-01 14 73491106 73491106 G C ZFYVE1 Missense_Mutation p.C37W 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-UF-A7JT-01 15 28483355 28483355 C A HERC2 Missense_Mutation p.A1253S 0.20 possibly_damaging(0.72) TCGA-UF-A7JT-01 15 42003184 42003184 C T MGA Silent p.F907F 0.13 TCGA-UF-A7JT-01 15 43045107 43045107 C G TTBK2 Missense_Mutation p.E779D 0.27 tolerated_low_confidence(0.09) benign(0.003) TCGA-UF-A7JT-01 15 49064753 49064753 G T CEP152 Silent p.L571L 0.17 TCGA-UF-A7JT-01 15 56126259 56126259 G C NEDD4 Missense_Mutation p.Q1150E 0.17 tolerated(0.53) benign(0.175) TCGA-UF-A7JT-01 15 79059199 79059199 C T ADAMTS7 Silent p.E1018E 0.21 TCGA-UF-A7JT-01 15 86284631 86284631 C T AKAP13 Missense_Mutation p.R2659C 0.16 deleterious(0) probably_damaging(0.991) TCGA-UF-A7JT-01 16 2135263 2135263 C T TSC2 Silent p.L1534L 0.15 TCGA-UF-A7JT-01 16 23091426 23091426 G A USP31 Missense_Mutation p.P673S 0.20 deleterious(0.01) probably_damaging(1) TCGA-UF-A7JT-01 16 28913312 28913312 C T ATP2A1 Silent p.I743I 0.24 TCGA-UF-A7JT-01 16 56868678 56868678 C T NUP93 Silent p.D590D 0.22 TCGA-UF-A7JT-01 16 67006327 67006327 G C CES3 Missense_Mutation p.A454P 0.19 tolerated(1) benign(0.04) TCGA-UF-A7JT-01 16 68104954 68104954 C G DUS2 Missense_Mutation p.I251M 0.25 deleterious(0) possibly_damaging(0.692) TCGA-UF-A7JT-01 16 69374142 69374142 G A NIP7 Silent p.L63L 0.19 TCGA-UF-A7JT-01 16 77228397 77228397 A C MON1B Missense_Mutation p.Q214P 0.21 deleterious(0.04) benign(0.012) TCGA-UF-A7JT-01 16 77228398 77228398 G T MON1B Missense_Mutation p.Q214H 0.22 deleterious(0.01) probably_damaging(0.91) TCGA-UF-A7JT-01 16 86575788 86575788 G A MTHFSD Silent p.A158A 0.30 TCGA-UF-A7JT-01 17 10728737 10728737 C T PIRT Missense_Mutation p.A76T 0.09 tolerated(0.49) benign(0.028) TCGA-UF-A7JT-01 17 18678497 18678497 G A FBXW10 Missense_Mutation p.R776Q 0.23 tolerated(0.35) benign(0.002) TCGA-UF-A7JT-01 17 30666951 30666951 G A C17orf75 Silent p.S76S 0.20 TCGA-UF-A7JT-01 17 4623846 4623846 A G ARRB2 Intron 0.24 TCGA-UF-A7JT-01 17 58121213 58121213 G A HEATR6 Missense_Mutation p.S1086L 0.26 tolerated(0.12) benign(0.003) TCGA-UF-A7JT-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.22 deleterious(0) probably_damaging(0.998) TCGA-UF-A7JT-01 17 7636513 7636513 G T DNAH2 Missense_Mutation p.A170S 0.23 benign(0.013) TCGA-UF-A7JT-01 17 7736222 7736222 C T DNAH2 Silent p.D4318D 0.23 TCGA-UF-A7JT-01 17 79425896 79425896 G C RP11-1055B8.7 Missense_Mutation p.E1836Q 0.09 benign(0.017) TCGA-UF-A7JT-01 17 8141731 8141731 G A CTC1 Silent p.N138N 0.25 TCGA-UF-A7JT-01 18 44407983 44407983 C G PIAS2 Missense_Mutation p.D483H 0.13 deleterious(0.02) benign(0.407) TCGA-UF-A7JT-01 18 70417625 70417625 C A NETO1 Missense_Mutation p.A405S 0.24 tolerated(0.17) benign(0.396) TCGA-UF-A7JT-01 18 8638167 8638167 G A RAB12 Silent p.R214R 0.09 TCGA-UF-A7JT-01 19 10602303 10602303 G C KEAP1 Missense_Mutation p.I425M 0.25 tolerated(0.11) possibly_damaging(0.789) TCGA-UF-A7JT-01 19 15569398 15569398 C T RASAL3 Missense_Mutation p.R244Q 0.20 tolerated(0.35) benign(0.009) TCGA-UF-A7JT-01 19 16980532 16980532 G A SIN3B Missense_Mutation p.G722R 0.10 tolerated(0.06) benign(0.365) TCGA-UF-A7JT-01 19 3054000 3054000 G C AES Silent p.A204A 0.21 TCGA-UF-A7JT-01 19 3054017 3054017 G A AES Silent p.L199L 0.29 TCGA-UF-A7JT-01 19 3534431 3534431 G A FZR1 Missense_Mutation p.D454N 0.31 deleterious(0.02) probably_damaging(1) TCGA-UF-A7JT-01 19 41898788 41898788 C T EXOSC5 Silent p.P82P 0.22 TCGA-UF-A7JT-01 19 44536389 44536389 C T ZNF222 Silent p.L228L 0.21 TCGA-UF-A7JT-01 19 44771188 44771188 C T ZNF233 Intron 0.47 TCGA-UF-A7JT-01 19 46974119 46974119 C G PNMAL1 Missense_Mutation p.K58N 0.07 deleterious(0.01) possibly_damaging(0.607) TCGA-UF-A7JT-01 19 49703924 49703924 C T TRPM4 Silent p.G945G 0.22 TCGA-UF-A7JT-01 19 53911277 53911277 G A ZNF765 Missense_Mutation p.E157K 0.18 tolerated(0.29) benign(0.019) TCGA-UF-A7JT-01 19 54314151 54314151 C T NLRP12 Silent p.E254E 0.12 TCGA-UF-A7JT-01 19 6416883 6416883 G C KHSRP Missense_Mutation p.P398R 0.24 tolerated(0.4) possibly_damaging(0.55) TCGA-UF-A7JT-01 19 8032618 8032618 C T ELAVL1 Missense_Mutation p.A163T 0.19 deleterious(0) probably_damaging(0.977) TCGA-UF-A7JT-01 19 9868876 9868876 G A ZNF846 Missense_Mutation p.H293Y 0.24 tolerated(1) benign(0.013) TCGA-UF-A7JT-01 1 11076957 11076957 G A TARDBP Missense_Mutation p.A99T 0.24 tolerated(0.64) benign(0.007) TCGA-UF-A7JT-01 1 117631430 117631430 C G TTF2 Nonsense_Mutation p.S723* 0.21 TCGA-UF-A7JT-01 1 118454640 118454640 C G GDAP2 Missense_Mutation p.E179Q 0.18 deleterious(0.05) possibly_damaging(0.607) TCGA-UF-A7JT-01 1 118454703 118454703 C G GDAP2 Missense_Mutation p.E158Q 0.16 deleterious(0) possibly_damaging(0.866) TCGA-UF-A7JT-01 1 150830924 150830924 T C ARNT Missense_Mutation p.D13G 0.28 deleterious(0) probably_damaging(0.939) TCGA-UF-A7JT-01 1 152275779 152275779 G A FLG Silent p.S3861S 0.17 TCGA-UF-A7JT-01 1 159826374 159826374 G C VSIG8 Missense_Mutation p.Q238E 0.21 deleterious(0.03) probably_damaging(0.963) TCGA-UF-A7JT-01 1 160011200 160011200 G A KCNJ10 Missense_Mutation p.R375C 0.21 deleterious(0) benign(0.04) TCGA-UF-A7JT-01 1 16260211 16260211 G C SPEN Missense_Mutation p.Q2492H 0.23 possibly_damaging(0.629) TCGA-UF-A7JT-01 1 167407814 167407814 C A CD247 Missense_Mutation p.G98V 0.21 deleterious(0.01) probably_damaging(1) TCGA-UF-A7JT-01 1 176525564 176525564 G C PAPPA2 Missense_Mutation p.E36Q 0.21 tolerated_low_confidence(1) benign(0) TCGA-UF-A7JT-01 1 200818898 200818898 C T CAMSAP2 Missense_Mutation p.L1001F 0.20 deleterious(0) probably_damaging(0.995) TCGA-UF-A7JT-01 1 201687586 201687586 G A NAV1 Missense_Mutation p.R310H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-UF-A7JT-01 1 207245651 207245651 G T PFKFB2 Missense_Mutation p.G485W 0.22 probably_damaging(0.992) TCGA-UF-A7JT-01 1 21205842 21205842 C T EIF4G3 Missense_Mutation p.A816T 0.09 deleterious(0) probably_damaging(0.992) TCGA-UF-A7JT-01 1 214557224 214557224 G C PTPN14 Silent p.L658L 0.10 TCGA-UF-A7JT-01 1 22165988 22165988 C A HSPG2 Missense_Mutation p.Q3255H 0.63 probably_damaging(0.951) TCGA-UF-A7JT-01 1 230492802 230492802 G A PGBD5 Silent p.L130L 0.24 TCGA-UF-A7JT-01 1 23782676 23782676 T C ASAP3 Silent p.G47G 0.48 TCGA-UF-A7JT-01 1 247599380 247599380 C A NLRP3 Missense_Mutation p.D869E 0.25 tolerated(0.06) possibly_damaging(0.846) TCGA-UF-A7JT-01 1 28835266 28835266 G A SNORA73B RNA 0.24 TCGA-UF-A7JT-01 1 53675717 53675717 G A CPT2 Missense_Mutation p.R124Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JT-01 1 53676109 53676109 G C CPT2 Missense_Mutation p.D255H 0.22 deleterious(0) probably_damaging(0.996) TCGA-UF-A7JT-01 1 68152040 68152040 G C GADD45A Missense_Mutation p.D52H 0.10 tolerated(0.05) probably_damaging(1) TCGA-UF-A7JT-01 1 70300527 70300527 G C LRRC7 Missense_Mutation p.E151Q 0.18 tolerated(0.13) probably_damaging(0.984) TCGA-UF-A7JT-01 1 77763534 77763534 G C AK5 Missense_Mutation p.E201Q 0.21 tolerated(0.08) probably_damaging(0.995) TCGA-UF-A7JT-01 20 35752159 35752159 C T MROH8 Missense_Mutation p.R637Q 0.25 tolerated(0.23) benign(0.049) TCGA-UF-A7JT-01 20 40120426 40120426 C T CHD6 Missense_Mutation p.E450K 0.18 deleterious(0.02) benign(0.097) TCGA-UF-A7JT-01 20 42806599 42806600 - T JPH2 Intron 0.14 TCGA-UF-A7JT-01 20 60794907 60794907 G A HRH3 Silent p.L40L 0.17 TCGA-UF-A7JT-01 21 34030113 34030113 C T SYNJ1 Missense_Mutation p.D831N 0.07 deleterious(0) possibly_damaging(0.9) TCGA-UF-A7JT-01 21 45107525 45107525 G T RRP1B Nonsense_Mutation p.E424* 0.23 TCGA-UF-A7JT-01 21 45107752 45107752 G C RRP1B Missense_Mutation p.Q499H 0.18 tolerated(0.07) benign(0.359) TCGA-UF-A7JT-01 22 35806734 35806734 C G MCM5 Intron 0.06 TCGA-UF-A7JT-01 2 113416648 113416648 C A SLC20A1 Missense_Mutation p.T342N 0.16 tolerated(0.39) benign(0.102) TCGA-UF-A7JT-01 2 116572544 116572544 G C DPP10 Missense_Mutation p.D630H 0.23 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 2 148684850 148684850 C T ACVR2A 3'UTR 0.10 TCGA-UF-A7JT-01 2 166897843 166897843 G C SCN1A Missense_Mutation p.D771E 0.14 tolerated(0.18) probably_damaging(0.998) TCGA-UF-A7JT-01 2 179476105 179476105 G T TTN Missense_Mutation p.P16951T 0.07 TCGA-UF-A7JT-01 2 190922347 190922347 G A MSTN Silent p.V255V 0.13 TCGA-UF-A7JT-01 2 223158888 223158888 C T PAX3 Missense_Mutation p.R195Q 0.18 deleterious(0.04) benign(0.245) TCGA-UF-A7JT-01 2 234171780 234171780 G C ATG16L1 Missense_Mutation p.G72R 0.14 tolerated(0.06) benign(0.349) TCGA-UF-A7JT-01 2 242440973 242440973 C T STK25 Missense_Mutation p.E61K 0.28 deleterious(0) probably_damaging(0.981) TCGA-UF-A7JT-01 2 3504628 3504628 G A ADI1 Missense_Mutation p.T126M 0.22 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JT-01 2 71891553 71891553 C T DYSF Missense_Mutation p.P1720L 0.13 deleterious(0) probably_damaging(0.995) TCGA-UF-A7JT-01 2 85779543 85779543 G T GGCX Missense_Mutation p.Q479K 0.14 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 2 98543938 98543938 G C TMEM131 Nonsense_Mutation p.S67* 0.16 TCGA-UF-A7JT-01 3 101578254 101578254 C T NFKBIZ 3'UTR 0.21 TCGA-UF-A7JT-01 3 111312713 111312748 CTTCTCCAGCTCCTCTCTGTGCATGCTTTTCAGATG - ZBED2 In_Frame_Del p.H101_K112del 0.16 TCGA-UF-A7JT-01 3 121514306 121514306 G C IQCB1 Missense_Mutation p.F328L 0.20 deleterious(0) possibly_damaging(0.877) TCGA-UF-A7JT-01 3 12978071 12978071 C G IQSEC1 Missense_Mutation p.E163Q 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-UF-A7JT-01 3 142281507 142281507 G A ATR Missense_Mutation p.S246F 0.10 deleterious_low_confidence(0.04) benign(0.049) TCGA-UF-A7JT-01 3 155632226 155632226 C G GMPS Missense_Mutation p.S302C 0.15 tolerated(0.08) benign(0.004) TCGA-UF-A7JT-01 3 169540060 169540060 C T LRRIQ4 Silent p.L117L 0.15 TCGA-UF-A7JT-01 3 182553928 182553928 C T ATP11B Missense_Mutation p.R141W 0.36 deleterious(0.04) possibly_damaging(0.6) TCGA-UF-A7JT-01 3 185184677 185184677 C T MAP3K13 Silent p.I523I 0.23 TCGA-UF-A7JT-01 3 3081615 3081615 G A CNTN4 Intron 0.29 TCGA-UF-A7JT-01 3 45943218 45943218 A G CCR9 Missense_Mutation p.N313S 0.22 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 3 46904811 46904811 C T MYL3 Missense_Mutation p.A24T 0.21 tolerated_low_confidence(0.2) unknown(0) TCGA-UF-A7JT-01 3 47079269 47079269 T A SETD2 Splice_Site p.X2413_splice 0.27 TCGA-UF-A7JT-01 3 49339923 49339923 G C USP4 Missense_Mutation p.S394C 0.23 tolerated(0.15) possibly_damaging(0.457) TCGA-UF-A7JT-01 3 49841713 49841713 T G FAM212A Missense_Mutation p.S53A 0.21 deleterious(0.01) benign(0.197) TCGA-UF-A7JT-01 3 98072987 98072987 G A OR5K4 Missense_Mutation p.C97Y 0.03 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 4 113348810 113348810 C G ALPK1 Missense_Mutation p.Q262E 0.15 tolerated(0.58) benign(0.005) TCGA-UF-A7JT-01 4 129920853 129920853 G A SCLT1 Missense_Mutation p.H175Y 0.13 tolerated(0.07) benign(0.081) TCGA-UF-A7JT-01 4 151114318 151114318 A G DCLK2 Missense_Mutation p.D262G 0.42 deleterious(0.01) probably_damaging(0.944) TCGA-UF-A7JT-01 4 162697095 162697095 C T FSTL5 Missense_Mutation p.D181N 0.12 tolerated(0.06) benign(0.075) TCGA-UF-A7JT-01 4 187540893 187540894 AC - FAT1 Frame_Shift_Del p.F2283Cfs*11 0.37 TCGA-UF-A7JT-01 4 27009227 27009227 C T STIM2 Nonsense_Mutation p.Q352* 0.28 TCGA-UF-A7JT-01 5 112177070 112177070 C T APC Missense_Mutation p.L1927F 0.25 benign(0.408) TCGA-UF-A7JT-01 5 140165895 140165895 G A PCDHA1 Missense_Mutation p.G7E 0.17 tolerated_low_confidence(0.31) benign(0.008) TCGA-UF-A7JT-01 5 140222520 140222520 C T PCDHA8 Silent p.R538R 0.20 TCGA-UF-A7JT-01 5 170236718 170236718 G T GABRP Missense_Mutation p.A327S 0.24 tolerated(0.06) probably_damaging(0.998) TCGA-UF-A7JT-01 5 179762846 179762846 G A GFPT2 Missense_Mutation p.R108C 0.27 deleterious(0.04) benign(0.168) TCGA-UF-A7JT-01 5 42695050 42695050 G C GHR Missense_Mutation p.E100Q 0.36 deleterious(0) probably_damaging(0.995) TCGA-UF-A7JT-01 5 71491129 71491129 G T MAP1B Missense_Mutation p.K649N 0.29 unknown(0) TCGA-UF-A7JT-01 6 112510351 112510353 CTT - LAMA4 In_Frame_Del p.E258del 0.26 TCGA-UF-A7JT-01 6 135271181 135271181 G A ALDH8A1 Missense_Mutation p.T4I 0.21 tolerated_low_confidence(0.11) benign(0.028) TCGA-UF-A7JT-01 6 151161875 151161875 T A PLEKHG1 Missense_Mutation p.V1334D 0.25 deleterious(0.02) benign(0.193) TCGA-UF-A7JT-01 6 152728177 152728177 C T SYNE1 Missense_Mutation p.R2232K 0.16 benign(0.001) TCGA-UF-A7JT-01 6 155154441 155154441 C T SCAF8 Missense_Mutation p.S1243L 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.643) TCGA-UF-A7JT-01 6 29910696 29910696 A G HLA-A Missense_Mutation p.E79G 0.29 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-UF-A7JT-01 6 29911088 29911088 G C HLA-A Silent p.S129S 0.20 TCGA-UF-A7JT-01 6 29911104 29911104 C T HLA-A Missense_Mutation p.R135C 0.18 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-UF-A7JT-01 6 31323241 31323241 G A HLA-B Nonsense_Mutation p.Q250* 0.21 TCGA-UF-A7JT-01 6 41897940 41897940 G A BYSL Missense_Mutation p.E168K 0.11 tolerated(0.08) possibly_damaging(0.639) TCGA-UF-A7JT-01 6 42196408 42196408 C G TRERF1 Splice_Site p.X1093_splice 0.27 TCGA-UF-A7JT-01 6 44221252 44221252 G C HSP90AB1 Missense_Mutation p.E698Q 0.16 deleterious(0.04) benign(0.012) TCGA-UF-A7JT-01 6 50807953 50807953 G A TFAP2B Missense_Mutation p.R342Q 0.20 deleterious(0) probably_damaging(0.979) TCGA-UF-A7JT-01 6 51618085 51618085 C A PKHD1 Missense_Mutation p.R2955L 0.13 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 6 62887133 62887133 T C KHDRBS2 Missense_Mutation p.K59R 0.28 tolerated(0.13) benign(0.183) TCGA-UF-A7JT-01 6 74104733 74104733 G A DDX43 Silent p.L35L 0.26 TCGA-UF-A7JT-01 6 83877898 83877898 G A PGM3 3'Flank 0.23 TCGA-UF-A7JT-01 7 107800849 107800849 C T NRCAM Silent p.L1185L 0.27 TCGA-UF-A7JT-01 7 122269330 122269330 C A CADPS2 Missense_Mutation p.R280L 0.16 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 7 127224969 127224969 G C GCC1 Missense_Mutation p.H90D 0.09 deleterious(0.02) benign(0.289) TCGA-UF-A7JT-01 7 138603353 138603353 C G KIAA1549 Missense_Mutation p.R340T 0.11 deleterious(0.03) benign(0.164) TCGA-UF-A7JT-01 7 142143686 142143686 G C TRBV6-7 Missense_Mutation p.Q104E 0.17 deleterious(0.03) possibly_damaging(0.625) TCGA-UF-A7JT-01 7 150416150 150416150 G C GIMAP1 Missense_Mutation p.K5N 0.31 deleterious(0) possibly_damaging(0.856) TCGA-UF-A7JT-01 7 4901301 4901301 G C PAPOLB Silent p.L46L 0.17 TCGA-UF-A7JT-01 7 6441974 6441974 C T RAC1 Missense_Mutation p.A178V 0.21 deleterious(0) probably_damaging(0.986) TCGA-UF-A7JT-01 7 82595455 82595455 C A PCLO Nonsense_Mutation p.E1217* 0.22 TCGA-UF-A7JT-01 8 100883892 100883892 G A VPS13B Silent p.Q3929Q 0.36 TCGA-UF-A7JT-01 8 122641508 122641508 C A HAS2 Nonsense_Mutation p.G25* 0.41 TCGA-UF-A7JT-01 8 141559377 141559377 C T AGO2 Missense_Mutation p.R475K 0.14 tolerated(0.45) benign(0.01) TCGA-UF-A7JT-01 8 144996950 144996950 C T PLEC Missense_Mutation p.E2520K 0.21 probably_damaging(0.993) TCGA-UF-A7JT-01 8 145113144 145113144 C T OPLAH Missense_Mutation p.G316E 0.27 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 8 17830019 17830019 G A PCM1 Missense_Mutation p.E1256K 0.19 tolerated(0.21) probably_damaging(0.919) TCGA-UF-A7JT-01 8 41801352 41801352 C G KAT6A Missense_Mutation p.K714N 0.23 benign(0.114) TCGA-UF-A7JT-01 8 48761721 48761721 C G PRKDC Missense_Mutation p.R2424T 0.23 benign(0.041) TCGA-UF-A7JT-01 8 6366505 6366505 C T ANGPT2 Silent p.K426K 0.16 TCGA-UF-A7JT-01 8 68139438 68139438 G C ARFGEF1 Missense_Mutation p.L1284V 0.17 tolerated(0.15) possibly_damaging(0.641) TCGA-UF-A7JT-01 8 73849824 73849824 C T KCNB2 Missense_Mutation p.S745L 0.17 tolerated_low_confidence(0.24) benign(0.028) TCGA-UF-A7JT-01 9 104238220 104238220 C T TMEM246 Silent p.V385V 0.22 TCGA-UF-A7JT-01 9 107267046 107267046 T A OR13F1 Missense_Mutation p.L168H 0.23 deleterious(0) probably_damaging(0.954) TCGA-UF-A7JT-01 9 108377582 108377582 G A FKTN Silent p.V268V 0.14 TCGA-UF-A7JT-01 9 111665870 111665870 C T IKBKAP Missense_Mutation p.D575N 0.22 tolerated(0.13) benign(0.261) TCGA-UF-A7JT-01 9 114296088 114296088 C T ZNF483 Nonsense_Mutation p.Q191* 0.17 TCGA-UF-A7JT-01 9 123007275 123007275 C T MIR147A RNA 0.21 TCGA-UF-A7JT-01 9 130270795 130270795 G A FAM129B Missense_Mutation p.T447M 0.20 deleterious(0) probably_damaging(1) TCGA-UF-A7JT-01 9 131190588 131190588 C T CERCAM Silent p.S258S 0.14 TCGA-UF-A7JT-01 9 131339216 131339216 G A SPTAN1 Missense_Mutation p.E256K 0.16 tolerated(0.09) probably_damaging(0.96) TCGA-UF-A7JT-01 9 131388253 131388253 G T SPTAN1 Missense_Mutation p.R2092L 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-UF-A7JT-01 9 139326414 139326414 C A INPP5E Nonsense_Mutation p.E471* 0.10 TCGA-UF-A7JT-01 9 34107381 34107381 C A DCAF12 Silent p.T172T 0.18 TCGA-UF-A7JT-01 9 34660381 34660381 C T IL11RA Missense_Mutation p.R355W 0.42 tolerated(0.06) benign(0.01) TCGA-UF-A7JT-01 9 35043206 35043207 CA - C9orf131 Frame_Shift_Del p.Q194Afs*44 0.14 TCGA-UF-A7JT-01 9 35689169 35689169 C G TPM2 Missense_Mutation p.E72Q 0.23 deleterious(0.04) possibly_damaging(0.611) TCGA-UF-A7JT-01 9 6329115 6329115 C A TPD52L3 3'UTR 0.50 TCGA-UF-A7JT-01 9 95609862 95609862 G T ZNF484 Missense_Mutation p.Q405K 0.15 tolerated(0.07) probably_damaging(0.919) TCGA-UF-A7JT-01 X 10442739 10442739 G A MID1 Silent p.L355L 0.13 TCGA-UF-A7JT-01 X 110495609 110495609 C T CAPN6 Missense_Mutation p.E209K 0.09 tolerated(0.7) possibly_damaging(0.874) TCGA-UF-A7JT-01 X 112058609 112058609 C G AMOT Missense_Mutation p.E457Q 0.20 unknown(0) TCGA-UF-A7JT-01 X 118968979 118968979 C T UPF3B Silent p.A438A 0.09 TCGA-UF-A7JT-01 X 129150170 129150170 G A BCORL1 Missense_Mutation p.R1141Q 0.24 benign(0.011) TCGA-UF-A7JT-01 X 1584751 1584751 C T P2RY8 Missense_Mutation p.R234H 0.26 tolerated(0.09) possibly_damaging(0.864) TCGA-UF-A7JT-01 X 19008956 19008956 C G GPR64 3'UTR 0.10 TCGA-UF-A7JT-01 X 19560228 19560228 C T SH3KBP1 Silent p.A569A 0.10 TCGA-UF-A7JT-01 X 24741352 24741352 G A POLA1 Missense_Mutation p.E384K 0.21 deleterious(0.05) probably_damaging(0.929) TCGA-UF-A7JT-01 X 34148917 34148917 C T FAM47A Silent p.S493S 0.17 TCGA-UF-A7JT-01 X 46857542 46857542 C G JADE3 Missense_Mutation p.I49M 0.15 deleterious(0) probably_damaging(0.993) TCGA-UF-A7JT-01 X 50053732 50053732 C G CCNB3 Missense_Mutation p.H855D 0.32 tolerated(0.26) possibly_damaging(0.507) TCGA-UF-A7JT-01 X 53575991 53575991 C T HUWE1 Missense_Mutation p.V3322I 0.18 benign(0.103) TCGA-UF-A7JT-01 X 56310859 56310859 G C KLF8 Missense_Mutation p.D338H 0.19 tolerated(0.16) benign(0.253) TCGA-UF-A7JT-01 X 77225022 77225022 C T PGAM4 Silent p.A38A 0.25 TCGA-UF-A7JV-01 10 126312058 126312058 G A FAM53B Missense_Mutation p.S341L 0.33 deleterious(0.02) benign(0.124) TCGA-UF-A7JV-01 10 13251175 13251175 C T MCM10 Intron 0.12 TCGA-UF-A7JV-01 10 135083941 135083941 C T ADAM8 Missense_Mutation p.V570M 0.22 tolerated(0.29) possibly_damaging(0.62) TCGA-UF-A7JV-01 10 13538828 13538828 G C BEND7 Nonsense_Mutation p.S118* 0.23 TCGA-UF-A7JV-01 10 61830997 61830997 C T ANK3 Silent p.K3214K 0.14 TCGA-UF-A7JV-01 11 36597294 36597294 G C RAG1 Missense_Mutation p.E814Q 0.25 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-UF-A7JV-01 11 65373414 65373414 C T MAP3K11 Intron 0.23 TCGA-UF-A7JV-01 11 763351 763351 G A TALDO1 Missense_Mutation p.E157K 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-UF-A7JV-01 11 763465 763465 G C TALDO1 Missense_Mutation p.D195H 0.19 deleterious(0) probably_damaging(0.985) TCGA-UF-A7JV-01 11 763491 763491 G A TALDO1 Silent p.K203K 0.19 TCGA-UF-A7JV-01 11 763501 763501 G A TALDO1 Missense_Mutation p.E207K 0.20 tolerated(0.24) benign(0.043) TCGA-UF-A7JV-01 11 94599237 94599237 G C AMOTL1 Missense_Mutation p.A798P 0.07 deleterious(0.05) probably_damaging(0.928) TCGA-UF-A7JV-01 12 53449623 53449623 C T TENC1 Missense_Mutation p.S262F 0.28 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JV-01 12 6883996 6883996 C G LAG3 Missense_Mutation p.F249L 0.21 tolerated(1) benign(0.148) TCGA-UF-A7JV-01 12 7522148 7522148 C A CD163L1 Missense_Mutation p.V1282L 0.22 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JV-01 12 99640152 99640152 C G ANKS1B Missense_Mutation p.E749D 0.24 tolerated(0.1) benign(0.003) TCGA-UF-A7JV-01 13 111145581 111145581 C T COL4A2 Missense_Mutation p.R1196C 0.04 possibly_damaging(0.898) TCGA-UF-A7JV-01 13 29599100 29599100 C T MTUS2 Nonsense_Mutation p.Q99* 0.22 TCGA-UF-A7JV-01 13 32972827 32972827 G C BRCA2 Missense_Mutation p.E3393Q 0.18 tolerated(0.22) possibly_damaging(0.791) TCGA-UF-A7JV-01 16 24988567 24988567 C A ARHGAP17 Missense_Mutation p.G56V 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-UF-A7JV-01 16 3614884 3614884 C T NLRC3 Missense_Mutation p.A99T 0.32 tolerated(0.14) benign(0.012) TCGA-UF-A7JV-01 16 48139103 48139103 T A ABCC12 Missense_Mutation p.T874S 0.20 deleterious(0.04) possibly_damaging(0.733) TCGA-UF-A7JV-01 16 57758618 57758618 G C CCDC135 Missense_Mutation p.E543D 0.22 deleterious(0) probably_damaging(0.999) TCGA-UF-A7JV-01 16 84212717 84212717 T - TAF1C Frame_Shift_Del p.M814Cfs*83 0.21 TCGA-UF-A7JV-01 17 27042131 27042131 G A RAB34 Nonsense_Mutation p.Q232* 0.20 TCGA-UF-A7JV-01 17 2995883 2995883 C G OR1D2 Missense_Mutation p.M136I 0.32 deleterious(0.04) benign(0.008) TCGA-UF-A7JV-01 17 43240142 43240142 G A HEXIM2 5'UTR 0.19 TCGA-UF-A7JV-01 17 72691256 72691256 G T CD300LF Nonsense_Mutation p.Y284* 0.14 TCGA-UF-A7JV-01 17 7699805 7699805 C T DNAH2 Silent p.F2566F 0.23 TCGA-UF-A7JV-01 18 23619391 23619391 G C SS18 Missense_Mutation p.Q213E 0.19 deleterious_low_confidence(0.05) probably_damaging(0.949) TCGA-UF-A7JV-01 18 31325299 31325299 G C ASXL3 Missense_Mutation p.K1829N 0.25 probably_damaging(0.999) TCGA-UF-A7JV-01 19 22157019 22157019 T A ZNF208 Missense_Mutation p.T273S 0.19 tolerated(0.41) benign(0.013) TCGA-UF-A7JV-01 19 2220106 2220106 G C DOT1L Splice_Site p.X898_splice 0.16 TCGA-UF-A7JV-01 19 23543326 23543326 T C ZNF91 Missense_Mutation p.I819V 0.20 tolerated(0.1) probably_damaging(0.941) TCGA-UF-A7JV-01 19 49631663 49631663 G A PPFIA3 Missense_Mutation p.E94K 0.14 deleterious(0.01) probably_damaging(0.96) TCGA-UF-A7JV-01 19 51381830 51381830 C T KLK2 3'UTR 0.35 TCGA-UF-A7JV-01 19 52826165 52826165 C T ZNF480 3'UTR 0.22 TCGA-UF-A7JV-01 19 53854494 53854494 C G ZNF845 Missense_Mutation p.S189C 0.23 tolerated(0.48) probably_damaging(0.994) TCGA-UF-A7JV-01 19 54930406 54930406 C T TTYH1 Silent p.P77P 0.25 TCGA-UF-A7JV-01 19 56180837 56180837 C T U2AF2 Silent p.L358L 0.17 TCGA-UF-A7JV-01 19 5692088 5692089 - AA LONP1 Frame_Shift_Ins p.A946Sfs*71 0.20 TCGA-UF-A7JV-01 1 151955683 151955683 T A S100A10 Missense_Mutation p.N84Y 0.23 deleterious(0.02) benign(0.087) TCGA-UF-A7JV-01 1 152057429 152057429 G C TCHHL1 3'UTR 0.18 TCGA-UF-A7JV-01 1 154987239 154987239 G A ZBTB7B Missense_Mutation p.D69N 0.23 deleterious(0) possibly_damaging(0.716) TCGA-UF-A7JV-01 1 17083655 17083655 G A MST1L RNA 0.07 TCGA-UF-A7JV-01 1 175049481 175049481 C T TNN Missense_Mutation p.P323S 0.08 deleterious(0.03) possibly_damaging(0.687) TCGA-UF-A7JV-01 1 236749198 236749198 G T HEATR1 Silent p.I657I 0.22 TCGA-UF-A7JV-01 1 39877390 39877390 G A KIAA0754 Missense_Mutation p.E349K 0.24 benign(0.002) TCGA-UF-A7JV-01 1 40537170 40537170 A C CAP1 Missense_Mutation p.K465Q 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-UF-A7JV-01 1 66102290 66102290 G A LEPR Silent p.E1030E 0.29 TCGA-UF-A7JV-01 1 6635087 6635087 G A TAS1R1 Missense_Mutation p.A299T 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-UF-A7JV-01 20 44683556 44683556 A G SLC12A5 Missense_Mutation p.H917R 0.45 tolerated(0.35) benign(0.194) TCGA-UF-A7JV-01 20 6032876 6032876 G A LRRN4 Silent p.I190I 0.35 TCGA-UF-A7JV-01 20 60791962 60791962 C T HRH3 Silent p.Q146Q 0.45 TCGA-UF-A7JV-01 20 61943054 61943054 G A COL20A1 Silent p.L539L 0.46 TCGA-UF-A7JV-01 20 62328212 62328212 C T TNFRSF6B Missense_Mutation p.A31V 0.19 tolerated(0.06) unknown(0) TCGA-UF-A7JV-01 21 33671366 33671366 G A MRAP Silent p.E28E 0.11 TCGA-UF-A7JV-01 22 38120745 38120745 G T TRIOBP Missense_Mutation p.D728Y 0.19 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-UF-A7JV-01 22 40139838 40139838 C T ENTHD1 Missense_Mutation p.R557H 0.20 tolerated(0.23) benign(0) TCGA-UF-A7JV-01 22 40364245 40364245 A T GRAP2 Missense_Mutation p.Q220L 0.16 tolerated(0.32) benign(0.075) TCGA-UF-A7JV-01 2 109382704 109382704 G A RANBP2 Silent p.S1903S 0.21 TCGA-UF-A7JV-01 2 179567232 179567232 C T TTN Missense_Mutation p.D10128N 0.22 TCGA-UF-A7JV-01 2 220309638 220309638 C T SPEG Silent p.S190S 0.19 TCGA-UF-A7JV-01 2 233245430 233245430 G A ALPP Silent p.L321L 0.08 TCGA-UF-A7JV-01 2 242142813 242142813 C G ANO7 Missense_Mutation p.F317L 0.25 tolerated(0.06) benign(0.003) TCGA-UF-A7JV-01 2 24469021 24469023 GTC - ITSN2 In_Frame_Del p.T1185del 0.23 TCGA-UF-A7JV-01 2 68607996 68607996 A T PLEK Missense_Mutation p.T114S 0.20 tolerated(0.57) probably_damaging(0.997) TCGA-UF-A7JV-01 2 72360149 72360149 C G CYP26B1 Intron 0.17 TCGA-UF-A7JV-01 2 96521762 96521762 T A ANKRD36C Missense_Mutation p.K443M 0.10 deleterious(0) probably_damaging(0.966) TCGA-UF-A7JV-01 3 142176529 142176529 A T ATR Silent p.G2524G 0.25 TCGA-UF-A7JV-01 3 150301645 150301645 C T EIF2A Nonsense_Mutation p.Q569* 0.21 TCGA-UF-A7JV-01 3 17056393 17056393 C T PLCL2 Missense_Mutation p.T877I 0.21 deleterious(0.01) benign(0.104) TCGA-UF-A7JV-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.23 deleterious(0.04) probably_damaging(0.96) TCGA-UF-A7JV-01 3 50289829 50289829 G A GNAI2 Silent p.K54K 0.24 TCGA-UF-A7JV-01 4 70512982 70512982 A G UGT2A1 Silent p.D127D 0.14 TCGA-UF-A7JV-01 5 139508337 139508337 G C IGIP 3'UTR 0.33 TCGA-UF-A7JV-01 5 154397131 154397131 A G KIF4B 3'UTR 0.21 TCGA-UF-A7JV-01 5 32126603 32126603 G A GOLPH3 Silent p.L204L 0.21 TCGA-UF-A7JV-01 5 41199960 41199960 C T C6 Missense_Mutation p.A119T 0.19 tolerated(0.06) benign(0) TCGA-UF-A7JV-01 5 43174753 43174753 G A ZNF131 Missense_Mutation p.E430K 0.18 deleterious(0.02) possibly_damaging(0.616) TCGA-UF-A7JV-01 6 129371200 129371200 C T LAMA2 Nonsense_Mutation p.R84* 0.25 TCGA-UF-A7JV-01 6 30576880 30576880 C T PPP1R10 Silent p.Q56Q 0.27 TCGA-UF-A7JV-01 7 100410411 100410411 G A EPHB4 Silent p.L692L 0.21 TCGA-UF-A7JV-01 7 106509636 106509636 C T PIK3CG Nonsense_Mutation p.R544* 0.27 TCGA-UF-A7JV-01 7 107211589 107211589 G A DUS4L Splice_Site p.X39_splice 0.18 TCGA-UF-A7JV-01 7 107688432 107688432 G A LAMB4 Missense_Mutation p.T1416M 0.04 tolerated(0.11) benign(0.443) TCGA-UF-A7JV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-UF-A7JV-01 7 97922852 97922852 G C BAIAP2L1 Missense_Mutation p.S506W 0.19 deleterious(0) probably_damaging(1) TCGA-UF-A7JV-01 8 104061168 104061168 C A ATP6V1C1 Missense_Mutation p.L91M 0.38 deleterious(0.01) possibly_damaging(0.89) TCGA-UF-A7JV-01 8 145806379 145806379 C T ARHGAP39 Silent p.E121E 0.31 TCGA-UF-A7JV-01 8 98703324 98703324 C T MTDH Missense_Mutation p.P319L 0.18 deleterious(0.01) possibly_damaging(0.628) TCGA-UF-A7JV-01 9 112705410 112705410 T A PALM2 Missense_Mutation p.F314Y 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-UF-A7JV-01 9 125330480 125330480 T C OR1L8 Missense_Mutation p.I93V 0.27 tolerated(0.06) benign(0.078) TCGA-UF-A7JV-01 9 136214960 136214960 C A MED22 5'Flank 0.27 TCGA-UF-A7JV-01 9 139874684 139874684 C G PTGDS Missense_Mutation p.F166L 0.24 tolerated(0.19) probably_damaging(0.956) TCGA-UF-A7JV-01 9 21862166 21862166 T G MTAP 3'UTR 0.59 TCGA-UF-A7JV-01 9 3225217 3225217 G C RFX3 Missense_Mutation p.A692G 0.66 deleterious(0.02) possibly_damaging(0.65) TCGA-UF-A7JV-01 X 105451255 105451255 G A MUM1L1 Silent p.V610V 0.20 TCGA-UF-A7JV-01 X 134993810 134993810 C G SAGE1 Nonsense_Mutation p.S740* 0.21 TCGA-UF-A7JV-01 X 144906469 144906469 C T SLITRK2 Silent p.I842I 0.26 TCGA-UF-A7JV-01 X 50052279 50052279 G A CCNB3 Silent p.K370K 0.20 TCGA-UP-A6WW-01 10 100143468 100143468 G T PYROXD2 3'UTR 0.77 TCGA-UP-A6WW-01 10 29762806 29762806 C T SVIL Silent p.A1830A 0.46 TCGA-UP-A6WW-01 10 62631312 62631312 T G RHOBTB1 Missense_Mutation p.E673D 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-UP-A6WW-01 12 27470897 27470897 C G STK38L Missense_Mutation p.L342V 0.41 deleterious(0) probably_damaging(1) TCGA-UP-A6WW-01 12 52115352 52115352 C T SCN8A Missense_Mutation p.S553L 0.38 tolerated(0.22) probably_damaging(0.914) TCGA-UP-A6WW-01 14 106208402 106208402 C A IGHG1 Missense_Mutation p.E166D 0.24 tolerated(0.06) benign(0.148) TCGA-UP-A6WW-01 17 2233881 2233881 G A TSR1 Silent p.P566P 0.81 TCGA-UP-A6WW-01 17 74387543 74387543 G A UBE2O Silent p.P1120P 0.79 TCGA-UP-A6WW-01 17 9578275 9578275 C T USP43 Silent p.L270L 0.78 TCGA-UP-A6WW-01 17 9680518 9680518 C T DHRS7C Missense_Mutation p.R189H 0.86 deleterious(0.01) benign(0.323) TCGA-UP-A6WW-01 19 11280805 11280805 C T KANK2 Missense_Mutation p.M785I 0.63 deleterious(0) probably_damaging(0.974) TCGA-UP-A6WW-01 19 33512485 33512485 C T RHPN2 Missense_Mutation p.V128I 0.42 tolerated(0.18) benign(0.009) TCGA-UP-A6WW-01 19 49558641 49558641 C T CGB7 5'UTR 0.60 TCGA-UP-A6WW-01 19 55966722 55966722 C T ISOC2 Silent p.L124L 0.34 TCGA-UP-A6WW-01 1 145561861 145561861 G T ANKRD35 Missense_Mutation p.V517F 0.35 tolerated(0.17) benign(0) TCGA-UP-A6WW-01 1 237580424 237580424 G A RYR2 Splice_Site p.X283_splice 0.28 TCGA-UP-A6WW-01 1 247875657 247875657 G A OR6F1 Missense_Mutation p.A134V 0.46 tolerated(0.45) benign(0.001) TCGA-UP-A6WW-01 1 248202348 248202348 G A OR2L2 Missense_Mutation p.R260H 0.43 tolerated(0.12) benign(0.022) TCGA-UP-A6WW-01 20 3095970 3095970 C A UBOX5 Missense_Mutation p.W466C 0.44 tolerated(0.25) benign(0.013) TCGA-UP-A6WW-01 20 48164408 48164408 C T PTGIS Missense_Mutation p.S116N 0.41 tolerated(1) benign(0) TCGA-UP-A6WW-01 22 38111796 38111796 G T TRIOBP Missense_Mutation p.E161D 0.57 tolerated_low_confidence(0.28) unknown(0) TCGA-UP-A6WW-01 2 100906852 100906852 A C LONRF2 Missense_Mutation p.I596M 0.39 deleterious(0) probably_damaging(0.93) TCGA-UP-A6WW-01 2 132110683 132110684 TC - AC073869.2 RNA 0.29 TCGA-UP-A6WW-01 3 134911542 134911542 G A EPHB1 Silent p.A669A 0.47 TCGA-UP-A6WW-01 3 13672897 13672897 T C FBLN2 Missense_Mutation p.Y1052H 0.38 deleterious(0.05) probably_damaging(1) TCGA-UP-A6WW-01 3 193125105 193125105 G A ATP13A4 Silent p.A1125A 0.41 TCGA-UP-A6WW-01 3 38648250 38648250 G A SCN5A Silent p.H350H 0.39 TCGA-UP-A6WW-01 3 44683476 44683476 A G ZNF197 Missense_Mutation p.K285R 0.43 tolerated(0.37) benign(0.003) TCGA-UP-A6WW-01 3 44881850 44881850 A T KIF15 Missense_Mutation p.N1108Y 0.43 tolerated(0.07) benign(0.11) TCGA-UP-A6WW-01 3 48474071 48474071 T A CCDC51 Missense_Mutation p.E328V 0.45 deleterious(0.01) possibly_damaging(0.699) TCGA-UP-A6WW-01 3 48474072 48474072 C T CCDC51 Missense_Mutation p.E328K 0.46 deleterious(0.03) benign(0.342) TCGA-UP-A6WW-01 3 51457789 51457789 T C VPRBP Missense_Mutation p.T450A 0.09 tolerated(0.98) benign(0.002) TCGA-UP-A6WW-01 4 113569085 113569085 G A LARP7 Intron 0.44 TCGA-UP-A6WW-01 4 164507013 164507013 C T MARCH1 Missense_Mutation p.R104H 0.44 tolerated(0.49) probably_damaging(0.985) TCGA-UP-A6WW-01 4 8620216 8620216 C T CPZ Missense_Mutation p.R522W 0.40 deleterious(0.02) probably_damaging(0.995) TCGA-UP-A6WW-01 5 129070740 129070740 C T ADAMTS19 Missense_Mutation p.P1137L 0.31 deleterious(0.03) possibly_damaging(0.739) TCGA-UP-A6WW-01 6 24358006 24358006 G A KAAG1 Missense_Mutation p.A47T 0.10 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-UP-A6WW-01 7 11091372 11091372 C T PHF14 Missense_Mutation p.P816S 0.36 tolerated(0.35) benign(0.018) TCGA-UP-A6WW-01 7 29135786 29135786 C T CPVL Silent p.P112P 0.36 TCGA-UP-A6WW-01 7 45725619 45725619 C T ADCY1 Missense_Mutation p.S711L 0.34 tolerated(0.23) benign(0.001) TCGA-UP-A6WW-01 7 57194423 57194423 T C ZNF479 Silent p.G14G 0.41 TCGA-UP-A6WW-01 7 6048644 6048644 G A PMS2 Nonsense_Mutation p.R3* 0.45 TCGA-UP-A6WW-01 7 64168665 64168665 G T ZNF107 Missense_Mutation p.E661D 0.38 deleterious(0.03) probably_damaging(0.942) TCGA-UP-A6WW-01 8 141445299 141445299 G A TRAPPC9 Silent p.H355H 0.33 TCGA-UP-A6WW-01 8 144992057 144992057 C T PLEC Missense_Mutation p.D4115N 0.33 probably_damaging(1) TCGA-UP-A6WW-01 8 22267520 22267520 C T SLC39A14 Silent p.L173L 0.38 TCGA-UP-A6WW-01 8 67428270 67428270 G A C8orf46 Missense_Mutation p.E195K 0.36 deleterious(0) probably_damaging(0.987) TCGA-UP-A6WW-01 9 27297013 27297014 - A EQTN Frame_Shift_Ins p.S14Ffs*5 0.37 TCGA-UP-A6WW-01 9 73213435 73213435 A G TRPM3 Missense_Mutation p.V971A 0.81 deleterious(0.03) probably_damaging(0.994) TCGA-UP-A6WW-01 X 24512955 24512955 C G PDK3 Missense_Mutation p.P68R 0.81 deleterious(0) probably_damaging(1) TCGA-UP-A6WW-01 X 41000616 41000616 G CACCTTAT USP9X Frame_Shift_Ins p.V365Hfs*12 0.70 TCGA-WA-A7GZ-01 10 103919277 103919277 T A NOLC1 Missense_Mutation p.S271T 0.15 deleterious_low_confidence(0) benign(0.153) TCGA-WA-A7GZ-01 10 112764471 112764471 C G SHOC2 Silent p.L360L 0.05 TCGA-WA-A7GZ-01 10 115540420 115540420 T C PLEKHS1 3'Flank 0.24 TCGA-WA-A7GZ-01 10 120877149 120877149 C T FAM45A Nonsense_Mutation p.R151* 0.35 TCGA-WA-A7GZ-01 10 121693241 121693241 C T SEC23IP Nonsense_Mutation p.R989* 0.12 TCGA-WA-A7GZ-01 10 135009218 135009218 G A KNDC1 Missense_Mutation p.V543I 0.52 tolerated(0.24) benign(0.028) TCGA-WA-A7GZ-01 10 30306786 30306786 G T KIAA1462 3'UTR 0.29 TCGA-WA-A7GZ-01 10 30306787 30306787 G T KIAA1462 3'UTR 0.25 TCGA-WA-A7GZ-01 10 46222968 46222968 C A FAM21C Nonsense_Mutation p.S36* 0.12 TCGA-WA-A7GZ-01 10 46248143 46248143 G A FAM21C Missense_Mutation p.E371K 0.18 deleterious(0) possibly_damaging(0.628) TCGA-WA-A7GZ-01 10 70451319 70451319 C T TET1 Silent p.N2053N 0.10 TCGA-WA-A7GZ-01 10 88768491 88768491 A G RP11-96C23.10 3'Flank 0.36 TCGA-WA-A7GZ-01 10 94239147 94239147 T C IDE Missense_Mutation p.N591D 0.15 deleterious(0.03) benign(0.09) TCGA-WA-A7GZ-01 11 101834519 101834525 ATCCGTC - KIAA1377 Frame_Shift_Del p.Y918Lfs*2 0.23 TCGA-WA-A7GZ-01 11 112832174 112832174 C T NCAM1 Missense_Mutation p.S6L 0.26 unknown(0) TCGA-WA-A7GZ-01 11 117100339 117100339 C T PCSK7 Silent p.A74A 0.09 TCGA-WA-A7GZ-01 11 1214757 1214757 A G MUC5AC RNA 0.30 TCGA-WA-A7GZ-01 11 1267341 1267341 C T MUC5B Silent p.T3077T 0.25 TCGA-WA-A7GZ-01 11 27743110 27743110 C T RP11-587D21.4 Intron 0.36 TCGA-WA-A7GZ-01 11 45672336 45672336 C A CHST1 Silent p.L46L 0.26 TCGA-WA-A7GZ-01 11 47765672 47765672 C A FNBP4 Missense_Mutation p.G430V 0.30 deleterious(0) probably_damaging(1) TCGA-WA-A7GZ-01 11 55579636 55579636 G A OR5L1 Missense_Mutation p.E232K 0.30 tolerated(0.06) probably_damaging(0.911) TCGA-WA-A7GZ-01 11 55606887 55606887 T A OR5D16 Nonsense_Mutation p.Y220* 0.10 TCGA-WA-A7GZ-01 11 56345134 56345134 C G OR5M10 Missense_Mutation p.V22L 0.38 deleterious(0.02) benign(0.002) TCGA-WA-A7GZ-01 11 57070013 57070013 G A TNKS1BP1 Nonsense_Mutation p.Q1535* 0.31 TCGA-WA-A7GZ-01 11 57313477 57313477 G A SMTNL1 Silent p.Q365Q 0.21 TCGA-WA-A7GZ-01 11 57946991 57946991 C T OR9Q1 Silent p.L25L 0.23 TCGA-WA-A7GZ-01 11 57995715 57995715 C A OR10Q1 Silent p.V211V 0.14 TCGA-WA-A7GZ-01 11 59271951 59271951 G A OR4D11 Silent p.L301L 0.36 TCGA-WA-A7GZ-01 11 62291072 62291086 TTCACTTTGGGCATC - AHNAK In_Frame_Del p.V3605_K3609del 0.22 TCGA-WA-A7GZ-01 11 62293276 62293276 G C AHNAK Silent p.L2871L 0.08 TCGA-WA-A7GZ-01 11 62293496 62293496 G C AHNAK Nonsense_Mutation p.S2798* 0.08 TCGA-WA-A7GZ-01 11 66113655 66113655 C A B3GNT1 Missense_Mutation p.L371F 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-WA-A7GZ-01 11 66260573 66260573 G A DPP3 Missense_Mutation p.V407M 0.13 deleterious(0) probably_damaging(0.95) TCGA-WA-A7GZ-01 11 66982819 66982819 C G KDM2A Missense_Mutation p.F165L 0.30 tolerated(1) benign(0) TCGA-WA-A7GZ-01 11 75152270 75152270 G A GDPD5 Missense_Mutation p.P471S 0.32 tolerated(0.46) benign(0.021) TCGA-WA-A7GZ-01 11 92531594 92531594 C A FAT3 Missense_Mutation p.S1805R 0.29 benign(0.023) TCGA-WA-A7GZ-01 12 107372302 107372302 C A MTERFD3 Missense_Mutation p.R64I 0.10 deleterious(0) possibly_damaging(0.9) TCGA-WA-A7GZ-01 12 109284009 109284009 A C DAO Missense_Mutation p.I138L 0.36 tolerated(0.78) benign(0.04) TCGA-WA-A7GZ-01 12 12629888 12629888 C G DUSP16 Missense_Mutation p.R626T 0.09 deleterious(0) probably_damaging(0.99) TCGA-WA-A7GZ-01 12 133215852 133215852 T C POLE Missense_Mutation p.K1804R 0.48 tolerated(1) benign(0.003) TCGA-WA-A7GZ-01 12 21201656 21201656 C T SLCO1B7 Silent p.A335A 0.20 TCGA-WA-A7GZ-01 12 34179606 34179606 T - ALG10 Frame_Shift_Del p.W395Gfs*3 0.30 TCGA-WA-A7GZ-01 12 4771726 4771726 G A NDUFA9 Missense_Mutation p.A194T 0.21 tolerated(0.15) benign(0.12) TCGA-WA-A7GZ-01 12 53804967 53804967 C G SP1 Missense_Mutation p.I767M 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.703) TCGA-WA-A7GZ-01 12 56600258 56600258 T C RNF41 Missense_Mutation p.I309M 0.19 deleterious(0) possibly_damaging(0.833) TCGA-WA-A7GZ-01 12 66731855 66731855 C G HELB Missense_Mutation p.F1079L 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-WA-A7GZ-01 12 69650523 69650523 A G CPSF6 Missense_Mutation p.M141V 0.37 deleterious(0.01) unknown(0) TCGA-WA-A7GZ-01 12 7475033 7475033 C T ACSM4 Missense_Mutation p.R341W 0.29 deleterious(0) possibly_damaging(0.766) TCGA-WA-A7GZ-01 12 98909804 98909804 C T TMPO Silent p.L53L 0.13 TCGA-WA-A7GZ-01 13 108861130 108861130 C T LIG4 Silent p.L829L 0.20 TCGA-WA-A7GZ-01 13 25901152 25901152 A C NUPL1 Missense_Mutation p.N377T 0.31 tolerated(0.56) benign(0.027) TCGA-WA-A7GZ-01 13 25901160 25901160 A G NUPL1 Missense_Mutation p.I380V 0.30 tolerated(0.17) benign(0.02) TCGA-WA-A7GZ-01 13 28141920 28141920 G A LNX2 Missense_Mutation p.R238W 0.17 deleterious(0) probably_damaging(0.994) TCGA-WA-A7GZ-01 13 37598214 37598214 T C SUPT20H Missense_Mutation p.M517V 0.36 tolerated(0.51) benign(0.017) TCGA-WA-A7GZ-01 13 53035910 53035910 A G CKAP2 Missense_Mutation p.I318V 0.12 tolerated(0.75) benign(0.02) TCGA-WA-A7GZ-01 14 105407698 105407698 G A AHNAK2 Missense_Mutation p.S4697L 0.56 benign(0.018) TCGA-WA-A7GZ-01 14 21971721 21971721 C A METTL3 Splice_Site p.X107_splice 0.14 TCGA-WA-A7GZ-01 14 45475443 45475443 C G FAM179B Missense_Mutation p.F959L 0.29 tolerated(0.53) benign(0.001) TCGA-WA-A7GZ-01 14 58909589 58909589 G A KIAA0586 Silent p.P245P 0.33 TCGA-WA-A7GZ-01 14 89037454 89037454 G A ZC3H14 Missense_Mutation p.R74H 0.26 deleterious(0) probably_damaging(0.999) TCGA-WA-A7GZ-01 14 92403509 92403509 C T FBLN5 Missense_Mutation p.R54Q 0.35 deleterious(0.05) benign(0.185) TCGA-WA-A7GZ-01 14 92537302 92537302 G A ATXN3 Missense_Mutation p.S323L 0.21 tolerated(0.09) benign(0.012) TCGA-WA-A7GZ-01 15 25307544 25307544 C T SNORD116-5 RNA 0.04 TCGA-WA-A7GZ-01 15 25322114 25322114 G T SNORD116-9 3'Flank 0.18 TCGA-WA-A7GZ-01 15 25324246 25324246 G A SNORD116-13 RNA 0.25 TCGA-WA-A7GZ-01 15 33180454 33180454 G A FMN1 Missense_Mutation p.P1029S 0.27 tolerated(0.08) probably_damaging(0.943) TCGA-WA-A7GZ-01 15 34072457 34072457 C T RYR3 Silent p.A3061A 0.27 TCGA-WA-A7GZ-01 15 42135877 42135877 G A PLA2G4B Silent p.L480L 0.20 TCGA-WA-A7GZ-01 15 42168797 42168797 C A SPTBN5 Missense_Mutation p.Q1300H 0.36 probably_damaging(0.973) TCGA-WA-A7GZ-01 15 42302446 42302446 G A PLA2G4E Intron 0.21 TCGA-WA-A7GZ-01 15 44944452 44944452 T C SPG11 Silent p.G294G 0.26 TCGA-WA-A7GZ-01 15 50223357 50223357 A T ATP8B4 Missense_Mutation p.F534Y 0.30 deleterious(0) possibly_damaging(0.789) TCGA-WA-A7GZ-01 15 51696963 51696963 C T GLDN 3'UTR 0.10 TCGA-WA-A7GZ-01 15 66790138 66790138 C T SNAPC5 5'UTR 0.29 TCGA-WA-A7GZ-01 15 66812954 66812954 G A ZWILCH Missense_Mutation p.E183K 0.24 deleterious(0) probably_damaging(0.999) TCGA-WA-A7GZ-01 15 69006964 69006964 T C CORO2B Missense_Mutation p.Y278H 0.27 deleterious(0) probably_damaging(0.991) TCGA-WA-A7GZ-01 15 75094370 75094370 C T CSK Silent p.F372F 0.23 TCGA-WA-A7GZ-01 15 96877672 96877672 G T NR2F2 Silent p.L270L 0.11 TCGA-WA-A7GZ-01 15 96877674 96877674 C G NR2F2 Missense_Mutation p.A271G 0.11 deleterious(0) probably_damaging(0.961) TCGA-WA-A7GZ-01 15 96877676 96877676 G C NR2F2 Missense_Mutation p.A272P 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-WA-A7GZ-01 16 22358367 22358367 C T CDR2 Silent p.E428E 0.35 TCGA-WA-A7GZ-01 16 2259480 2259480 C G BRICD5 Intron 0.27 TCGA-WA-A7GZ-01 16 2580737 2580737 C T CEMP1 Missense_Mutation p.R113K 0.14 deleterious_low_confidence(0) benign(0.14) TCGA-WA-A7GZ-01 16 74946248 74946248 C G WDR59 Missense_Mutation p.D413H 0.33 tolerated(0.06) benign(0.081) TCGA-WA-A7GZ-01 16 83992930 83992930 G A OSGIN1 Missense_Mutation p.D45N 0.33 tolerated(0.28) benign(0.037) TCGA-WA-A7GZ-01 16 85143886 85143900 GGTGGCCCGCAGCTC - FAM92B In_Frame_Del p.E63_T67del 0.31 TCGA-WA-A7GZ-01 17 10265714 10265714 T A MYH13 Missense_Mutation p.Y104F 0.29 tolerated(0.37) probably_damaging(0.982) TCGA-WA-A7GZ-01 17 16342900 16342900 G A TRPV2 3'Flank 0.14 TCGA-WA-A7GZ-01 17 20805554 20805554 G T RP11-344E13.3 RNA 0.26 TCGA-WA-A7GZ-01 17 33520722 33520722 G A SLC35G3 Missense_Mutation p.A202V 0.25 tolerated(0.24) benign(0.355) TCGA-WA-A7GZ-01 17 34165524 34165524 C T TAF15 Missense_Mutation p.P294S 0.07 tolerated_low_confidence(0.11) probably_damaging(0.993) TCGA-WA-A7GZ-01 17 34186002 34186002 C T C17orf66 Missense_Mutation p.A277T 0.20 tolerated(0.43) benign(0.035) TCGA-WA-A7GZ-01 17 34854435 34854435 G T ZNHIT3 3'Flank 0.33 TCGA-WA-A7GZ-01 17 3638150 3638150 C G ITGAE Missense_Mutation p.L872F 0.32 tolerated(0.07) possibly_damaging(0.589) TCGA-WA-A7GZ-01 17 40317679 40317679 C G KCNH4 Missense_Mutation p.E625Q 0.24 tolerated(0.34) benign(0.27) TCGA-WA-A7GZ-01 17 40734139 40734139 C G FAM134C Missense_Mutation p.E365Q 0.30 tolerated(0.52) benign(0.007) TCGA-WA-A7GZ-01 17 48166634 48166634 C A ITGA3 3'UTR 0.24 TCGA-WA-A7GZ-01 17 4863018 4863027 CCTCTCCCAG - SPAG7 Intron 0.22 TCGA-WA-A7GZ-01 17 4863350 4863351 - T SPAG7 Frame_Shift_Ins p.D128Efs*6 0.17 TCGA-WA-A7GZ-01 17 51901823 51901823 G A KIF2B Missense_Mutation p.A477T 0.25 deleterious(0.01) benign(0.39) TCGA-WA-A7GZ-01 17 5389406 5389406 G C DERL2 Missense_Mutation p.L26V 0.34 tolerated(0.19) benign(0.038) TCGA-WA-A7GZ-01 17 6498368 6498368 G A KIAA0753 Silent p.Y788Y 0.25 TCGA-WA-A7GZ-01 17 73736880 73736880 G A ITGB4 Missense_Mutation p.E853K 0.08 deleterious(0) possibly_damaging(0.679) TCGA-WA-A7GZ-01 17 7578271 7578271 T G TP53 Missense_Mutation p.H193P 0.45 deleterious(0) probably_damaging(1) TCGA-WA-A7GZ-01 17 77921583 77921583 G C TBC1D16 Missense_Mutation p.S530C 0.30 tolerated(0.1) benign(0.031) TCGA-WA-A7GZ-01 17 80015017 80015017 G A GPS1 3'UTR 0.22 TCGA-WA-A7GZ-01 18 645081 645081 G A CLUL1 Missense_Mutation p.E461K 0.11 tolerated(0.49) benign(0.066) TCGA-WA-A7GZ-01 19 11106910 11106910 C T SMARCA4 Missense_Mutation p.R539C 0.26 probably_damaging(0.998) TCGA-WA-A7GZ-01 19 13923921 13923921 G C ZSWIM4 Missense_Mutation p.E375Q 0.28 deleterious(0.01) possibly_damaging(0.607) TCGA-WA-A7GZ-01 19 17722620 17722620 C G UNC13A Missense_Mutation p.E1535Q 0.35 deleterious(0) possibly_damaging(0.678) TCGA-WA-A7GZ-01 19 18121448 18121448 G A ARRDC2 Silent p.P360P 0.39 TCGA-WA-A7GZ-01 19 18313528 18313528 C T RAB3A Missense_Mutation p.R8H 0.26 deleterious_low_confidence(0.04) benign(0.003) TCGA-WA-A7GZ-01 19 22941439 22941439 G C ZNF99 Silent p.P424P 0.37 TCGA-WA-A7GZ-01 19 34262315 34262315 C G CHST8 Intron 0.36 TCGA-WA-A7GZ-01 19 3551007 3551007 C T MFSD12 Missense_Mutation p.E162K 0.16 possibly_damaging(0.9) TCGA-WA-A7GZ-01 19 3942082 3942082 C T NMRK2 Silent p.V168V 0.39 TCGA-WA-A7GZ-01 19 42566782 42566782 G A GRIK5 Silent p.P122P 0.28 TCGA-WA-A7GZ-01 19 49573904 49573904 G T KCNA7 Silent p.R263R 0.30 TCGA-WA-A7GZ-01 19 51453210 51453210 G A KLK5 Missense_Mutation p.P79L 0.16 deleterious(0) probably_damaging(0.989) TCGA-WA-A7GZ-01 19 54403957 54403957 C T PRKCG Missense_Mutation p.T510M 0.34 tolerated(0.12) benign(0.329) TCGA-WA-A7GZ-01 19 54417826 54417826 C T CACNG7 Missense_Mutation p.T90M 0.21 deleterious(0.02) probably_damaging(0.971) TCGA-WA-A7GZ-01 19 54673334 54673334 G A TMC4 Missense_Mutation p.R126W 0.14 deleterious(0.01) possibly_damaging(0.634) TCGA-WA-A7GZ-01 19 55449431 55449431 A C NLRP7 Missense_Mutation p.C704G 0.32 deleterious(0.04) probably_damaging(0.943) TCGA-WA-A7GZ-01 19 55623899 55623899 C A PPP1R12C Silent p.L169L 0.29 TCGA-WA-A7GZ-01 19 56935034 56935034 G T ZNF583 Missense_Mutation p.G336V 0.25 tolerated(0.46) possibly_damaging(0.873) TCGA-WA-A7GZ-01 19 57328508 57328508 G C PEG3 Silent p.L434L 0.29 TCGA-WA-A7GZ-01 19 57716791 57716791 A T ZNF264 Missense_Mutation p.I63F 0.23 tolerated(0.07) benign(0.078) TCGA-WA-A7GZ-01 19 58196690 58196690 G A ZNF551 Missense_Mutation p.E48K 0.30 tolerated(0.05) benign(0.008) TCGA-WA-A7GZ-01 19 758306 758306 G A MISP Missense_Mutation p.E454K 0.50 tolerated(0.1) benign(0.015) TCGA-WA-A7GZ-01 1 120293524 120293524 G A HMGCS2 Silent p.F476F 0.29 TCGA-WA-A7GZ-01 1 147090756 147090756 C A BCL9 Silent p.P265P 0.33 TCGA-WA-A7GZ-01 1 152276071 152276071 G C FLG Nonsense_Mutation p.S3764* 0.34 TCGA-WA-A7GZ-01 1 179544737 179544737 C A NPHS2 Missense_Mutation p.R88L 0.18 tolerated(0.15) benign(0.06) TCGA-WA-A7GZ-01 1 196716277 196716277 A G CFH Missense_Mutation p.Y1177C 0.23 deleterious(0) probably_damaging(0.911) TCGA-WA-A7GZ-01 1 197128584 197128584 G C ZBTB41 Missense_Mutation p.L879V 0.17 deleterious_low_confidence(0) possibly_damaging(0.784) TCGA-WA-A7GZ-01 1 197404289 197404289 C A CRB1 Missense_Mutation p.T1099K 0.36 deleterious(0) probably_damaging(1) TCGA-WA-A7GZ-01 1 22307378 22307378 C T CELA3B Missense_Mutation p.A64V 0.37 deleterious(0.02) possibly_damaging(0.602) TCGA-WA-A7GZ-01 1 22332001 22332001 C T CELA3A Missense_Mutation p.A64V 0.08 deleterious(0.02) possibly_damaging(0.817) TCGA-WA-A7GZ-01 1 228612587 228612587 G A HIST3H3 3'UTR 0.07 TCGA-WA-A7GZ-01 1 240458175 240458175 T C FMN2 Missense_Mutation p.Y1403H 0.12 possibly_damaging(0.876) TCGA-WA-A7GZ-01 1 247719712 247719712 C G GCSAML Missense_Mutation p.C11W 0.21 deleterious(0) probably_damaging(0.938) TCGA-WA-A7GZ-01 1 2541172 2541172 C G MMEL1 Missense_Mutation p.E131Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-WA-A7GZ-01 1 27278035 27278035 G A C1orf172 Silent p.I279I 0.30 TCGA-WA-A7GZ-01 1 40981078 40981078 G A EXO5 Missense_Mutation p.D288N 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-WA-A7GZ-01 1 42041238 42041238 C T HIVEP3 Silent p.A1728A 0.13 TCGA-WA-A7GZ-01 1 42657219 42657219 G C FOXJ3 Nonsense_Mutation p.S369* 0.03 TCGA-WA-A7GZ-01 20 1285872 1285872 A G SNPH Missense_Mutation p.D220G 0.24 deleterious(0.02) probably_damaging(0.987) TCGA-WA-A7GZ-01 20 23860158 23860158 G A CST5 Silent p.I52I 0.19 TCGA-WA-A7GZ-01 20 2819522 2819522 C T PCED1A Silent p.V137V 0.06 TCGA-WA-A7GZ-01 20 35731160 35731160 G A MROH8 Missense_Mutation p.A1047V 0.13 tolerated(1) benign(0.005) TCGA-WA-A7GZ-01 20 37396227 37396227 G T ACTR5 Silent p.R518R 0.41 TCGA-WA-A7GZ-01 20 45221067 45221067 A T SLC13A3 Missense_Mutation p.F299Y 0.22 tolerated(0.13) benign(0.12) TCGA-WA-A7GZ-01 20 47605040 47605040 A G ARFGEF2 Missense_Mutation p.M792V 0.49 deleterious(0) possibly_damaging(0.705) TCGA-WA-A7GZ-01 20 47874151 47874151 T A ZNFX1 Missense_Mutation p.I823L 0.17 tolerated(0.39) benign(0.004) TCGA-WA-A7GZ-01 20 61386124 61386124 C T NTSR1 Missense_Mutation p.R268C 0.42 deleterious(0.01) possibly_damaging(0.806) TCGA-WA-A7GZ-01 21 33346916 33346916 A T HUNK Nonsense_Mutation p.K354* 0.28 TCGA-WA-A7GZ-01 22 37466596 37466596 C T TMPRSS6 Missense_Mutation p.R599Q 0.05 tolerated(0.42) benign(0.124) TCGA-WA-A7GZ-01 22 39917917 39917917 C G ATF4 Silent p.L122L 0.07 TCGA-WA-A7GZ-01 22 41997127 41997127 C T DESI1 Missense_Mutation p.V161M 0.14 tolerated(0.11) benign(0.002) TCGA-WA-A7GZ-01 22 46722505 46722505 C T GTSE1 Missense_Mutation p.P560S 0.18 tolerated(0.8) benign(0.018) TCGA-WA-A7GZ-01 2 112702628 112702628 G A MERTK Missense_Mutation p.E192K 0.20 tolerated(0.24) possibly_damaging(0.562) TCGA-WA-A7GZ-01 2 138169405 138169405 T A THSD7B Missense_Mutation p.N974K 0.33 tolerated(0.1) possibly_damaging(0.607) TCGA-WA-A7GZ-01 2 144714808 144714808 C T GTDC1 Missense_Mutation p.D362N 0.18 deleterious(0.01) probably_damaging(1) TCGA-WA-A7GZ-01 2 153532918 153532918 C G PRPF40A Splice_Site p.X344_splice 0.55 TCGA-WA-A7GZ-01 2 160994681 160994681 T C ITGB6 Silent p.V379V 0.29 TCGA-WA-A7GZ-01 2 170042104 170042104 C G LRP2 Missense_Mutation p.E3252Q 0.30 probably_damaging(0.987) TCGA-WA-A7GZ-01 2 170042307 170042307 C G LRP2 Missense_Mutation p.R3184P 0.28 probably_damaging(1) TCGA-WA-A7GZ-01 2 179718336 179718336 C A CCDC141 Nonsense_Mutation p.E1026* 0.27 TCGA-WA-A7GZ-01 2 182413467 182413467 C G CERKL Missense_Mutation p.R364P 0.09 deleterious(0) probably_damaging(0.989) TCGA-WA-A7GZ-01 2 183601042 183601042 A T DNAJC10 Missense_Mutation p.I306F 0.31 deleterious(0.01) benign(0.209) TCGA-WA-A7GZ-01 2 191353419 191353419 C G MFSD6 Missense_Mutation p.S556C 0.06 deleterious(0) probably_damaging(0.978) TCGA-WA-A7GZ-01 2 204000745 204000745 G C NBEAL1 Missense_Mutation p.E1358Q 0.08 tolerated(0.23) benign(0.375) TCGA-WA-A7GZ-01 2 204073440 204073440 C T NBEAL1 Silent p.I2500I 0.47 TCGA-WA-A7GZ-01 2 242054512 242054512 G A PASK Silent p.F1093F 0.40 TCGA-WA-A7GZ-01 2 27717517 27717517 G T FNDC4 Silent p.P10P 0.40 TCGA-WA-A7GZ-01 2 43801634 43801634 C G THADA Missense_Mutation p.E524Q 0.35 tolerated(0.31) benign(0.157) TCGA-WA-A7GZ-01 2 48059544 48059544 G A FBXO11 Missense_Mutation p.R448W 0.23 deleterious(0) possibly_damaging(0.58) TCGA-WA-A7GZ-01 2 60998716 60998716 C T PAPOLG Silent p.D185D 0.20 TCGA-WA-A7GZ-01 2 69623404 69623404 C T NFU1 Missense_Mutation p.D247N 0.09 tolerated(0.06) benign(0.021) TCGA-WA-A7GZ-01 2 72968463 72968463 C T EXOC6B Silent p.L83L 0.11 TCGA-WA-A7GZ-01 2 74692085 74692085 C A MOGS Missense_Mutation p.G97V 0.29 deleterious(0) probably_damaging(0.992) TCGA-WA-A7GZ-01 2 86260842 86260842 T C POLR1A Missense_Mutation p.N1368S 0.24 tolerated(0.54) benign(0.023) TCGA-WA-A7GZ-01 2 86684151 86684151 A G KDM3A Missense_Mutation p.N267S 0.28 tolerated(0.43) benign(0.001) TCGA-WA-A7GZ-01 3 11300990 11300990 C G HRH1 Silent p.L89L 0.16 TCGA-WA-A7GZ-01 3 126707991 126707991 C G PLXNA1 Silent p.L185L 0.31 TCGA-WA-A7GZ-01 3 130368102 130368102 G - COL6A6 Frame_Shift_Del p.R1810Sfs*88 0.20 TCGA-WA-A7GZ-01 3 140692718 140692718 C T SLC25A36 Silent p.L205L 0.26 TCGA-WA-A7GZ-01 3 14552981 14552981 C T GRIP2 RNA 0.32 TCGA-WA-A7GZ-01 3 174815058 174815068 AGAAGATATTA - NAALADL2 Frame_Shift_Del p.D176Vfs*10 0.20 TCGA-WA-A7GZ-01 3 36873812 36873812 C A TRANK1 Missense_Mutation p.R2377M 0.52 deleterious(0) possibly_damaging(0.832) TCGA-WA-A7GZ-01 3 47144912 47144917 ATCTGG - SETD2 Splice_Site p.X1614_splice 0.27 TCGA-WA-A7GZ-01 3 72890271 72890271 T C SHQ1 Silent p.V137V 0.42 TCGA-WA-A7GZ-01 4 123225996 123225996 G A KIAA1109 Missense_Mutation p.R3177K 0.29 probably_damaging(0.977) TCGA-WA-A7GZ-01 4 126238943 126238943 A T FAT4 Silent p.A459A 0.11 TCGA-WA-A7GZ-01 4 170354802 170354802 C G NEK1 Missense_Mutation p.E927Q 0.20 deleterious(0) probably_damaging(0.992) TCGA-WA-A7GZ-01 4 187522473 187522490 TGGAATATGTTCTGAGCC - FAT1 In_Frame_Del p.R3858_S3863del 0.33 TCGA-WA-A7GZ-01 4 57860682 57860682 C G POLR2B Missense_Mutation p.T119R 0.28 deleterious(0) probably_damaging(1) TCGA-WA-A7GZ-01 4 68527946 68527946 C G UBA6 Missense_Mutation p.L355F 0.06 tolerated(0.07) benign(0.005) TCGA-WA-A7GZ-01 4 72897781 72897781 G A NPFFR2 Missense_Mutation p.A55T 0.38 deleterious_low_confidence(0) benign(0) TCGA-WA-A7GZ-01 4 83801962 83801962 A G SEC31A Missense_Mutation p.S65P 0.31 deleterious(0.02) probably_damaging(0.969) TCGA-WA-A7GZ-01 4 88732994 88732994 G C IBSP Missense_Mutation p.E296Q 0.13 deleterious(0) probably_damaging(1) TCGA-WA-A7GZ-01 5 1064267 1064267 G C SLC12A7 Missense_Mutation p.I846M 0.22 deleterious(0.01) benign(0.227) TCGA-WA-A7GZ-01 5 140712045 140712045 G A PCDHGA1 Silent p.S598S 0.48 TCGA-WA-A7GZ-01 5 140773323 140773323 T C PCDHGA8 Missense_Mutation p.Y315H 0.39 tolerated_low_confidence(0.09) benign(0.393) TCGA-WA-A7GZ-01 5 179763530 179763530 G A GFPT2 Nonsense_Mutation p.Q55* 0.06 TCGA-WA-A7GZ-01 5 45303855 45303855 C T HCN1 Silent p.L488L 0.21 TCGA-WA-A7GZ-01 5 74046424 74046424 C G GFM2 Missense_Mutation p.D167H 0.29 deleterious(0) probably_damaging(1) TCGA-WA-A7GZ-01 5 88056904 88056904 G A MEF2C Silent p.P119P 0.41 TCGA-WA-A7GZ-01 5 96503502 96503502 G A RIOK2 Missense_Mutation p.R356W 0.34 deleterious(0.03) benign(0.002) TCGA-WA-A7GZ-01 6 106969284 106969284 G T AIM1 Missense_Mutation p.D993Y 0.22 deleterious(0) probably_damaging(0.94) TCGA-WA-A7GZ-01 6 133078596 133078596 T A VNN2 Silent p.P101P 0.31 TCGA-WA-A7GZ-01 6 144808721 144808721 G A UTRN Missense_Mutation p.R1287H 0.33 deleterious(0) probably_damaging(0.999) TCGA-WA-A7GZ-01 6 146755545 146755545 C T GRM1 Silent p.Y1066Y 0.21 TCGA-WA-A7GZ-01 6 157521890 157521890 G A ARID1B Missense_Mutation p.E1388K 0.20 probably_damaging(0.991) TCGA-WA-A7GZ-01 6 159398446 159398446 T C RSPH3 3'UTR 0.09 TCGA-WA-A7GZ-01 6 26017379 26017379 C T HIST1H1A Silent p.A194A 0.08 TCGA-WA-A7GZ-01 6 27100220 27100220 G A HIST1H2BJ Missense_Mutation p.P104S 0.33 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-WA-A7GZ-01 6 31540721 31540721 G A LTA Missense_Mutation p.G39D 0.09 tolerated(0.28) benign(0.028) TCGA-WA-A7GZ-01 6 31827528 31827528 C T NEU1 Missense_Mutation p.V406M 0.33 tolerated(0.25) benign(0.004) TCGA-WA-A7GZ-01 6 33179753 33179753 A T RING1 Missense_Mutation p.I365F 0.47 deleterious(0) unknown(0) TCGA-WA-A7GZ-01 6 35436775 35436775 G A RPL10A Silent p.Q44Q 0.24 TCGA-WA-A7GZ-01 6 44195012 44195012 G A SLC29A1 5'UTR 0.28 TCGA-WA-A7GZ-01 6 47251887 47251887 A G TNFRSF21 Missense_Mutation p.F344L 0.15 deleterious(0) probably_damaging(0.999) TCGA-WA-A7GZ-01 6 62611200 62611200 C G KHDRBS2 Missense_Mutation p.G187A 0.14 tolerated(0.1) probably_damaging(0.997) TCGA-WA-A7GZ-01 6 90331647 90331647 C T ANKRD6 Missense_Mutation p.R267C 0.54 deleterious(0.03) benign(0.327) TCGA-WA-A7GZ-01 7 110763396 110763396 C G LRRN3 Missense_Mutation p.L190V 0.24 deleterious(0) probably_damaging(0.999) TCGA-WA-A7GZ-01 7 110764692 110764692 G A LRRN3 Missense_Mutation p.E622K 0.22 tolerated(0.38) benign(0.002) TCGA-WA-A7GZ-01 7 111368442 111368442 G A DOCK4 Missense_Mutation p.A1930V 0.10 deleterious_low_confidence(0) benign(0.163) TCGA-WA-A7GZ-01 7 11441590 11441590 A T THSD7A Missense_Mutation p.C1415S 0.20 deleterious(0) probably_damaging(0.967) TCGA-WA-A7GZ-01 7 117232542 117232542 C T CFTR Missense_Mutation p.T774I 0.09 tolerated(0.13) probably_damaging(0.999) TCGA-WA-A7GZ-01 7 121943748 121943748 G A FEZF1 Silent p.F248F 0.40 TCGA-WA-A7GZ-01 7 128498608 128498608 C A FLNC 3'UTR 0.58 TCGA-WA-A7GZ-01 7 141708351 141708351 G A MGAM Missense_Mutation p.G58D 0.29 tolerated(0.64) benign(0.01) TCGA-WA-A7GZ-01 7 23651052 23651052 C G CCDC126 Missense_Mutation p.Q40E 0.04 tolerated(0.99) benign(0.215) TCGA-WA-A7GZ-01 7 44741199 44741199 G C OGDH Missense_Mutation p.D873H 0.25 deleterious(0) probably_damaging(0.933) TCGA-WA-A7GZ-01 7 48559723 48559723 C A ABCA13 Nonsense_Mutation p.C4628* 0.18 TCGA-WA-A7GZ-01 7 5410492 5410492 G A TNRC18 Silent p.L1245L 0.39 TCGA-WA-A7GZ-01 7 56154697 56154697 C T PHKG1 Missense_Mutation p.E95K 0.32 deleterious(0.02) possibly_damaging(0.516) TCGA-WA-A7GZ-01 7 86416063 86416063 G A GRM3 Missense_Mutation p.G319S 0.27 deleterious(0.01) possibly_damaging(0.835) TCGA-WA-A7GZ-01 7 88963981 88963981 A G ZNF804B Missense_Mutation p.N562S 0.31 tolerated(0.22) benign(0.002) TCGA-WA-A7GZ-01 8 104427338 104427338 G A DCAF13 Silent p.E40E 0.30 TCGA-WA-A7GZ-01 8 116632271 116632271 C G TRPS1 Missense_Mutation p.K18N 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WA-A7GZ-01 8 11994707 11994707 G T USP17L2 Missense_Mutation p.H521Q 0.20 tolerated(0.59) benign(0.005) TCGA-WA-A7GZ-01 8 124243966 124243966 G A C8orf76 Missense_Mutation p.T130I 0.14 deleterious(0) probably_damaging(0.973) TCGA-WA-A7GZ-01 8 133811394 133811394 G C PHF20L1 Silent p.S161S 0.23 TCGA-WA-A7GZ-01 8 144940707 144940707 G A EPPK1 Missense_Mutation p.R2239C 0.03 possibly_damaging(0.832) TCGA-WA-A7GZ-01 8 144993029 144993029 C G PLEC Missense_Mutation p.E3791Q 0.11 possibly_damaging(0.903) TCGA-WA-A7GZ-01 8 146076216 146076216 G A COMMD5 Missense_Mutation p.R170C 0.26 deleterious(0) probably_damaging(1) TCGA-WA-A7GZ-01 8 23174465 23174465 C T LOXL2 Missense_Mutation p.E545K 0.23 deleterious(0.01) benign(0.15) TCGA-WA-A7GZ-01 8 41550658 41550658 G A ANK1 Silent p.N1239N 0.22 TCGA-WA-A7GZ-01 8 57876267 57876267 T C IMPAD1 3'UTR 0.33 TCGA-WA-A7GZ-01 8 65517355 65517355 C G CYP7B1 Missense_Mutation p.E373Q 0.09 tolerated(1) benign(0.078) TCGA-WA-A7GZ-01 8 6690390 6690390 C A GS1-24F4.2 5'Flank 0.55 TCGA-WA-A7GZ-01 9 100405623 100405623 A G NCBP1 Missense_Mutation p.Y121C 0.57 deleterious(0) probably_damaging(0.971) TCGA-WA-A7GZ-01 9 104188845 104188845 T G ALDOB Missense_Mutation p.T206P 0.63 deleterious(0) probably_damaging(0.986) TCGA-WA-A7GZ-01 9 114296094 114296094 G T ZNF483 Nonsense_Mutation p.E193* 0.11 TCGA-WA-A7GZ-01 9 119461060 119461060 G A TRIM32 Missense_Mutation p.E347K 0.08 tolerated(0.5) benign(0.015) TCGA-WA-A7GZ-01 9 139960053 139960053 C T SAPCD2 Missense_Mutation p.R251Q 0.31 tolerated(0.05) benign(0.354) TCGA-WA-A7GZ-01 9 140807638 140807638 T C CACNA1B Silent p.L179L 0.45 TCGA-WA-A7GZ-01 9 35720091 35720091 G A TLN1 Missense_Mutation p.P470L 0.42 tolerated(0.3) benign(0.016) TCGA-WA-A7GZ-01 9 43815901 43815901 G T CNTNAP3B Nonsense_Mutation p.G219* 0.12 TCGA-WA-A7GZ-01 9 80262668 80262668 C T GNA14 Silent p.S14S 0.56 TCGA-WA-A7GZ-01 9 84608492 84608492 A T SPATA31D1 Missense_Mutation p.K1036I 0.17 tolerated(0.06) possibly_damaging(0.882) TCGA-WA-A7GZ-01 9 90535912 90535912 C G SPATA31C1 RNA 0.44 TCGA-WA-A7GZ-01 9 97873861 97873861 C T FANCC Missense_Mutation p.E405K 0.44 deleterious(0) benign(0.24) TCGA-WA-A7GZ-01 9 99180258 99180259 - GGC ZNF367 In_Frame_Ins p.P19dup 0.35 TCGA-WA-A7GZ-01 X 152815728 152815728 G A ATP2B3 Missense_Mutation p.E603K 0.37 deleterious(0) probably_damaging(0.985) TCGA-WA-A7GZ-01 X 152938024 152938024 C T PNCK Missense_Mutation p.R149H 0.76 tolerated(0.15) probably_damaging(0.955) TCGA-WA-A7GZ-01 X 49065818 49065818 C G CACNA1F Missense_Mutation p.E1630D 0.53 deleterious(0) benign(0.001) TCGA-WA-A7GZ-01 X 62898400 62898400 C T ARHGEF9 Missense_Mutation p.C205Y 0.52 deleterious(0) probably_damaging(0.986) TCGA-WA-A7H4-01 10 98711951 98711951 C T LCOR Silent p.N110N 0.06 TCGA-WA-A7H4-01 11 123516408 123516408 C T SCN3B Missense_Mutation p.V36M 0.12 deleterious(0) probably_damaging(0.987) TCGA-WA-A7H4-01 11 58392131 58392131 C T CNTF 3'UTR 0.24 TCGA-WA-A7H4-01 12 56814876 56814876 G C TIMELESS Missense_Mutation p.L971V 0.09 tolerated(0.59) benign(0.007) TCGA-WA-A7H4-01 12 8693383 8693383 G C CLEC4E Missense_Mutation p.S4C 0.08 deleterious_low_confidence(0.01) benign(0.01) TCGA-WA-A7H4-01 14 21109809 21109809 G A OR6S1 Silent p.F14F 0.06 TCGA-WA-A7H4-01 14 21424254 21424254 C G RNASE2 Missense_Mutation p.I108M 0.18 deleterious(0.02) benign(0.093) TCGA-WA-A7H4-01 14 21424255 21424255 C T RNASE2 Missense_Mutation p.H109Y 0.18 tolerated(1) benign(0.003) TCGA-WA-A7H4-01 14 32561642 32561642 T C ARHGAP5 Silent p.D589D 0.10 TCGA-WA-A7H4-01 14 61915942 61915942 A G PRKCH Missense_Mutation p.Q225R 0.09 tolerated(0.54) benign(0.253) TCGA-WA-A7H4-01 15 42437787 42437787 C T PLA2G4F Missense_Mutation p.S589N 0.07 tolerated(0.11) possibly_damaging(0.493) TCGA-WA-A7H4-01 16 18937327 18937327 C T SMG1 Missense_Mutation p.G13S 0.15 tolerated_low_confidence(0.21) unknown(0) TCGA-WA-A7H4-01 16 30080251 30080251 C T ALDOA Silent p.I218I 0.12 TCGA-WA-A7H4-01 16 32891896 32891896 G C SLC6A10P RNA 0.10 TCGA-WA-A7H4-01 16 48595377 48595377 C G N4BP1 Missense_Mutation p.E393Q 0.10 deleterious(0.04) benign(0.03) TCGA-WA-A7H4-01 16 72822728 72822728 C T ZFHX3 Silent p.P3149P 0.05 TCGA-WA-A7H4-01 16 81396185 81396185 A G GAN Missense_Mutation p.N352S 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-WA-A7H4-01 16 84027968 84027968 G T NECAB2 Missense_Mutation p.A220S 0.29 tolerated(1) benign(0.003) TCGA-WA-A7H4-01 17 19578919 19578919 C A ALDH3A2 3'UTR 0.15 TCGA-WA-A7H4-01 17 30349129 30349129 C G LRRC37B Missense_Mutation p.H322D 0.05 tolerated(0.14) probably_damaging(0.989) TCGA-WA-A7H4-01 17 37627938 37627938 C T CDK12 Missense_Mutation p.A618V 0.07 possibly_damaging(0.528) TCGA-WA-A7H4-01 17 5086992 5086992 T C ZNF594 Missense_Mutation p.E187G 0.11 deleterious(0) possibly_damaging(0.809) TCGA-WA-A7H4-01 18 2924428 2924428 G C LPIN2 Missense_Mutation p.I685M 0.10 deleterious(0) possibly_damaging(0.721) TCGA-WA-A7H4-01 19 10158008 10158008 G A C3P1 RNA 0.07 TCGA-WA-A7H4-01 19 12575076 12575076 G C ZNF709 Missense_Mutation p.H554D 0.05 deleterious(0) probably_damaging(0.995) TCGA-WA-A7H4-01 19 18672916 18672916 G T KXD1 Missense_Mutation p.S17I 0.09 deleterious(0) possibly_damaging(0.876) TCGA-WA-A7H4-01 19 19737971 19737971 G C LPAR2 Silent p.T41T 0.09 TCGA-WA-A7H4-01 19 19749229 19749229 C T GMIP Missense_Mutation p.M200I 0.08 tolerated(0.48) benign(0) TCGA-WA-A7H4-01 19 35804258 35804258 C A MAG Missense_Mutation p.D594E 0.13 deleterious(0.03) benign(0.307) TCGA-WA-A7H4-01 19 3586578 3586578 C T GIPC3 Missense_Mutation p.A104V 0.09 tolerated(0.08) possibly_damaging(0.587) TCGA-WA-A7H4-01 19 56701757 56701757 T G ZSCAN5B Missense_Mutation p.E309D 0.06 tolerated(0.48) benign(0.022) TCGA-WA-A7H4-01 1 103455097 103455097 C T COL11A1 Missense_Mutation p.D791N 0.05 unknown(0) TCGA-WA-A7H4-01 1 12294403 12294403 C T VPS13D Missense_Mutation p.S27L 0.06 probably_damaging(0.943) TCGA-WA-A7H4-01 1 146736116 146736116 T A CHD1L Silent p.T204T 0.08 TCGA-WA-A7H4-01 1 173176258 173176258 C G TNFSF4 Missense_Mutation p.E20Q 0.04 tolerated(0.65) benign(0.004) TCGA-WA-A7H4-01 1 193150702 193150702 A T B3GALT2 5'UTR 0.11 TCGA-WA-A7H4-01 1 228479702 228479702 G C OBSCN Missense_Mutation p.W3910C 0.06 probably_damaging(0.997) TCGA-WA-A7H4-01 1 240256629 240256629 G A FMN2 Missense_Mutation p.C407Y 0.10 unknown(0) TCGA-WA-A7H4-01 1 248616785 248616785 G A OR2T2 Missense_Mutation p.M229I 0.06 deleterious(0.04) benign(0.01) TCGA-WA-A7H4-01 1 27742575 27742575 G C WASF2 Silent p.L147L 0.17 TCGA-WA-A7H4-01 1 28233480 28233480 T C RPA2 Missense_Mutation p.T98A 0.14 deleterious(0) probably_damaging(0.965) TCGA-WA-A7H4-01 1 45294893 45294893 G A PTCH2 Missense_Mutation p.A436V 0.07 deleterious(0) benign(0.342) TCGA-WA-A7H4-01 1 6639024 6639024 G A TAS1R1 Missense_Mutation p.A636T 0.10 tolerated(0.06) benign(0.024) TCGA-WA-A7H4-01 1 93682201 93682201 G C CCDC18 Missense_Mutation p.K629N 0.05 deleterious(0) probably_damaging(0.948) TCGA-WA-A7H4-01 21 47746457 47746457 C T PCNT Missense_Mutation p.S74L 0.10 benign(0.035) TCGA-WA-A7H4-01 22 22277783 22277783 C T PPM1F Silent p.T349T 0.10 TCGA-WA-A7H4-01 2 121746944 121746944 G A GLI2 Missense_Mutation p.G1152S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-WA-A7H4-01 2 165551851 165551851 T A COBLL1 Missense_Mutation p.D722V 0.13 tolerated(0.55) benign(0.045) TCGA-WA-A7H4-01 2 20237127 20237127 T C LAPTM4A Missense_Mutation p.I128V 0.12 tolerated(0.5) benign(0.036) TCGA-WA-A7H4-01 2 207988567 207988567 G C KLF7 Missense_Mutation p.Q222E 0.11 deleterious(0.04) benign(0.018) TCGA-WA-A7H4-01 2 61433915 61433915 C T USP34 Missense_Mutation p.R3009H 0.08 tolerated(0.07) benign(0.017) TCGA-WA-A7H4-01 2 69627666 69627666 T C NFU1 Missense_Mutation p.T184A 0.06 tolerated(0.72) probably_damaging(0.951) TCGA-WA-A7H4-01 3 124053119 124053119 A G KALRN Missense_Mutation p.Q473R 0.13 tolerated(0.4) benign(0.064) TCGA-WA-A7H4-01 3 136170943 136170943 T C STAG1 Missense_Mutation p.R454G 0.12 tolerated(0.18) benign(0.024) TCGA-WA-A7H4-01 3 142078760 142078760 G A XRN1 Silent p.A1136A 0.06 TCGA-WA-A7H4-01 3 186505353 186505353 C G EIF4A2 Missense_Mutation p.L327V 0.10 deleterious(0) probably_damaging(0.929) TCGA-WA-A7H4-01 4 151124979 151124979 C T DCLK2 Missense_Mutation p.P349S 0.09 deleterious(0.04) benign(0.272) TCGA-WA-A7H4-01 4 15627482 15627482 G C FBXL5 Missense_Mutation p.Q415E 0.08 tolerated_low_confidence(0.89) benign(0.001) TCGA-WA-A7H4-01 4 1733024 1733024 T A TACC3 Silent p.A529A 0.09 TCGA-WA-A7H4-01 4 17513673 17513673 G A QDPR Missense_Mutation p.A2V 0.15 tolerated_low_confidence(0.23) benign(0.194) TCGA-WA-A7H4-01 4 17513674 17513674 C A QDPR Missense_Mutation p.A2S 0.16 tolerated_low_confidence(1) benign(0.184) TCGA-WA-A7H4-01 4 175899049 175899049 G A ADAM29 Silent p.T791T 0.09 TCGA-WA-A7H4-01 4 184633812 184633812 C G TRAPPC11 3'UTR 0.15 TCGA-WA-A7H4-01 4 36179604 36179604 T C ARAP2 Missense_Mutation p.I568V 0.10 tolerated(0.35) benign(0.002) TCGA-WA-A7H4-01 4 62758432 62758432 G A LPHN3 Silent p.R445R 0.05 TCGA-WA-A7H4-01 4 6296871 6296871 C T WFS1 Silent p.D272D 0.06 TCGA-WA-A7H4-01 4 66467860 66467860 A C EPHA5 Missense_Mutation p.C137G 0.08 deleterious(0) probably_damaging(0.985) TCGA-WA-A7H4-01 4 70455336 70455336 A T UGT2A1 Silent p.I612I 0.11 TCGA-WA-A7H4-01 5 125939781 125939781 A - PHAX Frame_Shift_Del p.R206Gfs*2 0.13 TCGA-WA-A7H4-01 5 140308207 140308207 G T PCDHAC1 Missense_Mutation p.G577V 0.11 deleterious(0) probably_damaging(0.998) TCGA-WA-A7H4-01 5 154173460 154173460 G A LARP1 Silent p.S246S 0.14 TCGA-WA-A7H4-01 5 68513647 68513647 C T MRPS36 5'UTR 0.11 TCGA-WA-A7H4-01 5 94014601 94014601 G C ANKRD32 Missense_Mutation p.R639T 0.05 deleterious(0) possibly_damaging(0.628) TCGA-WA-A7H4-01 5 94839625 94839625 T A TTC37 Missense_Mutation p.D1037V 0.07 deleterious(0) benign(0.279) TCGA-WA-A7H4-01 6 35765036 35765036 G A CLPS Silent p.V10V 0.09 TCGA-WA-A7H4-01 6 36447401 36447401 G C KCTD20 Missense_Mutation p.D191H 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-WA-A7H4-01 6 49448713 49448713 G A CENPQ Missense_Mutation p.D133N 0.11 tolerated(1) benign(0.022) TCGA-WA-A7H4-01 7 107114812 107114812 C T GPR22 Missense_Mutation p.L103F 0.04 deleterious(0.01) possibly_damaging(0.697) TCGA-WA-A7H4-01 7 156743149 156743149 G A NOM1 Missense_Mutation p.E240K 0.05 tolerated(0.11) benign(0.012) TCGA-WA-A7H4-01 7 99627983 99627983 A T ZKSCAN1 Missense_Mutation p.S262C 0.10 deleterious(0.01) benign(0.423) TCGA-WA-A7H4-01 8 106431395 106431395 G C ZFPM2 Missense_Mutation p.D22H 0.04 tolerated(0.05) possibly_damaging(0.753) TCGA-WA-A7H4-01 8 143381872 143381872 C T TSNARE1 Missense_Mutation p.R422Q 0.09 tolerated(0.07) possibly_damaging(0.847) TCGA-WA-A7H4-01 8 59728263 59728263 G A TOX Silent p.D342D 0.14 TCGA-WA-A7H4-01 8 74235183 74235183 G A RDH10 Missense_Mutation p.R313Q 0.07 tolerated(0.2) possibly_damaging(0.504) TCGA-WA-A7H4-01 9 18927993 18927993 T A FAM154A 3'UTR 0.07 TCGA-WA-A7H4-01 X 153762677 153762677 C T G6PD Missense_Mutation p.G204R 0.24 deleterious(0) probably_damaging(0.997)